SV# Chr Chr_coord_5p Chr_coord_3p TE TE_coord_start TE_coord_end Reads_collapsed Chr_Coord_Dist Symmetry avg_blat_score Norm_RefGen_Reads Coverage_Ratio classification comments insert_code loci_code Sym_score libname 1 chr2L 2621555 2621594 BS 5082 5043 6 39 '4-2 66.85 2.7 1.6 intergenic not near genes chr2L_6_2620001 chr2L_2620001 0.67 pool-EU-IT-DF3 2 chr2L 11678311 11678337 roo 397 9035 4 26 '2-2 64.70 3.8 0.8 intergenic not near genes chr2L_4_11675001 chr2L_11675001 0.50 pool-EU-IT-DF3 3 chr2L 12507663 12507902 P-element 2842 31 4 239 '3-1 38.54 2.5 1.1 intron bun - chr2L_4_12505001 chr2L_12505001 0.75 pool-EU-IT-DF3 4 chr2L 15142237 15142319 BS 4709 5075 9 82 '7-2 63.51 2.6 2.5 intergenic not near genes chr2L_9_15140001 chr2L_15140001 0.78 pool-EU-IT-DF3 5 chr2L 17841035 17841085 Juan 4046 4061 5 50 '3-2 58.22 4.3 0.9 intron CadN2 - chr2L_5_17840001 chr2L_17840001 0.60 pool-EU-IT-DF3 6 chr2L 18074970 18075046 Tabor 7302 17 4 76 '2-2 63.05 4.3 0.8 intergenic not near genes chr2L_4_18070001 chr2L_18070001 0.50 pool-EU-IT-DF3 7 chr2L 18570504 18570565 FB 42 8 5 61 '2-3 69.94 2.8 1.3 intron Pde11 - chr2L_5_18570001 chr2L_18570001 0.40 pool-EU-IT-DF3 8 chr2L 20425329 20425395 Stalker4 7337 6976 5 66 '2-3 56.25 4.3 0.9 intergenic not near genes chr2L_5_20425001 chr2L_20425001 0.40 pool-EU-IT-DF3 9 chr2L 21570226 21570273 Dm88 4407 4360 9 47 '4-5 66.91 2.1 2.9 intergenic not near genes chr2L_9_21570001 chr2L_21570001 0.44 pool-EU-IT-DF3 10 chr2R 3009454 3009500 pogo 33 2060 5 46 '3-2 75.84 2.7 1.4 intergenic not near genes chr2R_5_3005001 chr2R_3005001 0.60 pool-EU-IT-DF3 11 chr2R 5674635 5674720 S-element 5 1684 5 85 '4-1 63.70 1.7 1.9 intergenic not near genes chr2R_5_5670001 chr2R_5670001 0.80 pool-EU-IT-DF3 12 chr2R 6565004 6565095 blood 7019 7374 6 91 '4-2 61.44 2.7 1.6 intron jing + chr2R_6_6565001 chr2R_6565001 0.67 pool-EU-IT-DF3 13 chr2R 6779748 6779826 17.6 492 6951 6 78 '2-4 73.61 2.4 1.8 intron,3` UTR Epac -,Cyp6a2 - chr2R_6_6775001 chr2R_6775001 0.33 pool-EU-IT-DF3 14 chr2R 8186782 8187109 FB 27 15 4 327 '2-2 62.83 1.8 1.4 intron LRP1 + chr2R_4_8185001 chr2R_8185001 0.50 pool-EU-IT-DF3 15 chr2R 9408173 9408264 FB 16 3 4 91 '3-1 66.03 1.8 1.4 intron wun - chr2R_4_9405001 chr2R_9405001 0.75 pool-EU-IT-DF3 16 chr2R 9677207 9677265 Juan 4193 4050 4 58 '2-2 58.30 2.7 1.1 intron Mmp2 - chr2R_4_9675001 chr2R_9675001 0.50 pool-EU-IT-DF3 17 chr2R 9854029 9854126 pogo 22 2099 4 97 '2-2 62.58 2.5 1.1 intron CG1516 - chr2R_4_9850001 chr2R_9850001 0.50 pool-EU-IT-DF3 18 chr2R 9870988 9871036 roo 9041 9042 4 48 '3-1 60.48 3.6 0.9 intron cbx - chr2R_4_9870001 chr2R_9870001 0.75 pool-EU-IT-DF3 19 chr2R 11920920 11920981 pogo 2076 33 4 61 '2-2 62.20 3.7 0.9 intergenic not near genes chr2R_4_11920001 chr2R_11920001 0.50 pool-EU-IT-DF3 20 chr2R 12185314 12185424 accord 7379 1 7 110 '3-4 65.88 5.7 1.0 3` UTR,3` UTR CG13175 +,CG33964 + chr2R_7_12185001 chr2R_12185001 0.43 pool-EU-IT-DF3 21 chr2R 18807883 18807909 BS 5059 5084 5 26 '3-2 63.85 1.9 1.7 intergenic CG15096 - chr2R_5_18805001 chr2R_18805001 0.60 pool-EU-IT-DF3 22 chr3L 7094811 7094845 P-element 2869 2865 4 34 '1-3 48.11 3.6 0.9 intergenic form3 + chr3L_4_7090001 chr3L_7090001 0.25 pool-EU-IT-DF3 23 chr3L 10852071 10852118 Juan 4193 25 4 47 '3-1 58.91 4.5 0.7 intergenic not near genes chr3L_4_10850001 chr3L_10850001 0.75 pool-EU-IT-DF3 24 chr3L 15099535 15099628 G4 3834 3814 5 93 '3-2 67.39 2.4 1.5 intron CTPsyn + chr3L_5_15095001 chr3L_15095001 0.60 pool-EU-IT-DF3 25 chr3L 16637978 16638058 FB 20 9 5 80 '3-2 55.74 4.1 1.0 intron Abl - chr3L_5_16635001 chr3L_16635001 0.60 pool-EU-IT-DF3 26 chr3L 18684281 18684375 blood 7 7377 4 94 '2-2 62.16 2.8 1.1 3` UTR Cyp12c1 - chr3L_4_18680001 chr3L_18680001 0.50 pool-EU-IT-DF3 27 chr3L 19274794 19274863 transib2 12 2790 6 69 '4-2 62.72 4.0 1.2 intergenic not near genes chr3L_6_19270001 chr3L_19270001 0.67 pool-EU-IT-DF3 28 chr3L 19524471 19524540 412 459 11 4 69 '2-2 61.32 4.0 0.8 intron Cpr76Bc + chr3L_4_19520001 chr3L_19520001 0.50 pool-EU-IT-DF3 29 chr3L 19951199 19951272 Ivk 22 5366 10 73 '6-4 59.93 2.5 2.9 intron Ac76E + chr3L_10_19950001 chr3L_19950001 0.60 pool-EU-IT-DF3 30 chr3L 20471796 20471884 1360 1 3369 6 88 '5-1 62.48 2.8 1.6 intron CG32428 - chr3L_6_20470001 chr3L_20470001 0.83 pool-EU-IT-DF3 31 chr3L 22635679 22635742 hopper 13 1375 5 63 '4-1 59.78 4.3 0.9 intron CG14459 - chr3L_5_22635001 chr3L_22635001 0.80 pool-EU-IT-DF3 32 chr3L 22744681 22744718 FB 11 14 4 37 '1-3 74.04 3.7 0.9 intron CG7369 + chr3L_4_22740001 chr3L_22740001 0.25 pool-EU-IT-DF3 33 chr3L 25272535 25272568 1360 16 74 4 33 '2-2 64.95 2.6 1.1 intron CG40467 - chr3L_4_25270001 chr3L_25270001 0.50 pool-EU-IT-DF3 34 chr3R 7447013 7447105 Transpac 24 311 6 92 '4-2 71.21 3.8 1.2 intergenic not near genes chr3R_6_7445001 chr3R_7445001 0.67 pool-EU-IT-DF3 35 chr3R 7492397 7492496 1360 3377 3388 5 99 '2-3 67.52 4.1 1.0 intron alpha-Est10 - chr3R_5_7490001 chr3R_7490001 0.40 pool-EU-IT-DF3 36 chr3R 8090486 8090547 P-element 2842 2881 5 61 '2-3 48.61 1.1 2.4 intergenic CR44330 + chr3R_5_8090001 chr3R_8090001 0.40 pool-EU-IT-DF3 37 chr3R 10731997 10732093 Transpac 292 2 4 96 '3-1 65.22 2.6 1.1 intergenic not near genes chr3R_4_10730001 chr3R_10730001 0.75 pool-EU-IT-DF3 38 chr3R 13191422 13191510 mdg1 409 7053 6 88 '3-3 63.59 3.5 1.3 intergenic CG8141 + chr3R_6_13190001 chr3R_13190001 0.50 pool-EU-IT-DF3 39 chr3R 14049348 14049421 transib2 24 2806 5 73 '2-3 62.17 2.9 1.3 intergenic not near genes chr3R_5_14045001 chr3R_14045001 0.40 pool-EU-IT-DF3 40 chrX 4073990 4074035 roo 9026 408 4 45 '2-2 77.41 4.3 0.8 intergenic not near genes chrX_4_4070001 chrX_4070001 0.50 pool-EU-IT-DF3 41 chrX 5719202 5719292 pogo 2099 29 4 90 '2-2 68.40 2.1 1.3 intergenic not near genes chrX_4_5715001 chrX_5715001 0.50 pool-EU-IT-DF3 42 chrX 6514206 6514290 FB 2 22 4 84 '1-3 64.40 5.5 0.6 intron CG42340 - chrX_4_6510001 chrX_6510001 0.25 pool-EU-IT-DF3 43 chrX 7773997 7774070 mdg3 5292 5496 4 73 '2-2 69.68 3.3 0.9 intergenic not near genes chrX_4_7770001 chrX_7770001 0.50 pool-EU-IT-DF3 44 chrX 12138739 12138811 FB 29 8 4 72 '1-3 63.63 1.4 1.7 intron Ten-a + chrX_4_12135001 chrX_12135001 0.25 pool-EU-IT-DF3 45 chrX 17837950 17837987 S-element 1712 1675 5 37 '2-3 67.11 3.4 1.1 intron CG6398 + chrX_5_17835001 chrX_17835001 0.40 pool-EU-IT-DF3 46 chrX 18193766 18193815 hopper 43 1413 6 49 '3-3 69.25 1.5 2.4 intron Frq2 + chrX_6_18190001 chrX_18190001 0.50 pool-EU-IT-DF3 47 chrX 19887061 19887299 P-element 2883 18 4 238 '3-1 56.52 2.2 1.2 intron,exon Hers +,amn - chrX_4_19885001 chrX_19885001 0.75 pool-EU-IT-DF3 48 chrX 22579054 22579092 copia 5088 257 4 38 '2-2 70.38 2.1 1.3 intergenic not near genes chrX_4_22575001 chrX_22575001 0.50 pool-EU-IT-DF3