SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
2	chr2L	47409	47432	chr2L	52589	52612	jockey	8	5180	19.0	14.5	16.8	0.4	5203	chr2L	47409	intron	Cda5 -	chr2L	50010	intron	Cda5 -	chr2L	52612	intron	Cda5 -	chr2L_8_50001	chr2L_50001	w[1118]
9	chr2L	347820	347856	chr2L	355395	355431	blood	17	7575	20.0	11.0	15.5	1.0	7611	chr2L	347820	3` UTR	Plc21C +	chr2L	351626	intron	Plc21C +	chr2L	355431	3` UTR	Plc21C +	chr2L_17_350001	chr2L_350001	w[1118]
15	chr2L	770403	770438	chr2L	772259	772294	Bari1	13	1856	12.0	9.5	10.8	1.1	1891	chr2L	770403	intergenic	not near genes	chr2L	771348	intergenic	not near genes	chr2L	772294	intergenic	CR44614 +	chr2L_13_770001	chr2L_770001	w[1118]
21	chr2L	976814	976906	chr2L	984525	984617	roo	9	7711	5.5	5.0	5.2	1.5	7803	chr2L	976814	intergenic	not near genes	chr2L	980716	intergenic	not near genes	chr2L	984617	intergenic	not near genes	chr2L_9_980001	chr2L_980001	w[1118]
22	chr2L	996663	996698	chr2L	1005832	1005868	roo	12	9170	13.0	8.5	10.8	1.0	9205	chr2L	996663	intergenic	not near genes	chr2L	1001266	intergenic	not near genes	chr2L	1005868	intergenic	not near genes	chr2L_12_1000001	chr2L_1000001	w[1118]
29	chr2L	1220066	1220160	chr2L	1227607	1227703	blood	20	7541	6.5	9.5	8.0	2.2	7637	chr2L	1220066	intron	CG42329 +	chr2L	1223884	intron	CG42329 +	chr2L	1227703	exon	CG42329 +	chr2L_20_1220001	chr2L_1220001	w[1118]
36	chr2L	1570628	1570655	chr2L	1573575	1573602	F-element	12	2947	14.5	15.5	15.0	0.8	2974	chr2L	1570628	intron	haf +	chr2L	1572115	intron	haf +	chr2L	1573602	intron	haf +	chr2L_12_1570001	chr2L_1570001	w[1118]
38	chr2L	1618192	1618214	chr2L	1618597	1618619	jockey	4	405	0.0	2.5	1.2	1.8	427	chr2L	1618192	intergenic	CR44603 -	chr2L	1618406	intergenic	CR44603 -	chr2L	1618619	intergenic	CR44603 -	chr2L_4_1615001	chr2L_1615001	w[1118]
41	chr2L	1678917	1678955	chr2L	1686457	1686495	blood	8	7540	17.5	9.0	13.2	0.6	7578	chr2L	1678917	intron	chinmo +	chr2L	1682706	intron	chinmo +	chr2L	1686495	intron	chinmo +	chr2L_8_1680001	chr2L_1680001	w[1118]
42	chr2L	1711301	1711334	chr2L	1711700	1711733	mdg3	12	399	23.5	12.0	17.8	0.6	432	chr2L	1711301	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711517	3` UTR	frtz -	chr2L	1711733	3` UTR	frtz -	chr2L_12_1710001	chr2L_1710001	w[1118]
51	chr2L	2100300	2100313	chr2L	2109533	2109546	roo	7	9233	14.0	15.0	14.5	0.5	9246	chr2L	2100300	intron	dpr3 -	chr2L	2104923	intron	dpr3 -	chr2L	2109546	intron	dpr3 -	chr2L_7_2100001	chr2L_2100001	w[1118]
52	chr2L	2112041	2112139	chr2L	2119778	2119876	opus	8	7737	3.0	6.0	4.5	1.5	7835	chr2L	2112041	intergenic	not near genes	chr2L	2115958	intergenic	not near genes	chr2L	2119876	intergenic	not near genes	chr2L_8_2115001	chr2L_2115001	w[1118]
56	chr2L	2293977	2294017	chr2L	2299257	2299297	copia	10	5280	13.5	11.5	12.5	0.7	5320	chr2L	2293977	intergenic	not near genes	chr2L	2296637	intergenic	not near genes	chr2L	2299297	intergenic	not near genes	chr2L_10_2295001	chr2L_2295001	w[1118]
66	chr2L	2565502	2565563	chr2L	2571650	2571711	297	14	6148	7.5	9.5	8.5	1.5	6209	chr2L	2565502	exon	Cyp309a2 -	chr2L	2568606	intron	Cyp309a2 -	chr2L	2571711	exon	Cyp309a2 -	chr2L_14_2565001	chr2L_2565001	w[1118]
67	chr2L	2661153	2661165	chr2L	2663066	2663078	I-element	5	1913	12.0	8.0	10.0	0.5	1925	chr2L	2661153	intergenic	not near genes	chr2L	2662116	intergenic	not near genes	chr2L	2663078	intergenic	not near genes	chr2L_5_2660001	chr2L_2660001	w[1118]
75	chr2L	3072974	3073009	chr2L	3078252	3078287	copia	11	5278	14.0	14.5	14.2	0.7	5313	chr2L	3072974	intron	toc -	chr2L	3075630	intron	toc -	chr2L	3078287	intron	toc -	chr2L_11_3075001	chr2L_3075001	w[1118]
83	chr2L	3202694	3202712	chr2L	3210198	3210216	mdg1	6	7504	18.5	13.5	16.0	0.4	7522	chr2L	3202694	intergenic	not near genes	chr2L	3206455	intergenic	not near genes	chr2L	3210216	intergenic	CR45336 +	chr2L_6_3205001	chr2L_3205001	w[1118]
85	chr2L	3251465	3251469	chr2L	3259105	3259109	springer	4	7640	18.5	16.0	17.2	0.2	7644	chr2L	3251465	intergenic	not near genes	chr2L	3255287	intergenic	not near genes	chr2L	3259109	intergenic	not near genes	chr2L_4_3255001	chr2L_3255001	w[1118]
89	chr2L	3388533	3388620	chr2L	3388849	3388936	pogo	18	316	7.5	11.5	9.5	1.7	403	chr2L	3388533	intergenic	CG42460 -	chr2L	3388734	intergenic	CG42460 -	chr2L	3388936	intergenic	CR44791 +,CG42460 -	chr2L_18_3385001	chr2L_3385001	w[1118]
98	chr2L	3649720	3649807	chr2L	3654991	3655084	copia	12	5276	6.0	7.0	6.5	1.6	5364	chr2L	3649720	intron	for -	chr2L	3652402	intron	for -	chr2L	3655084	intron	for -	chr2L_12_3650001	chr2L_3650001	w[1118]
102	chr2L	3871809	3871896	chr2L	3872148	3872235	INE-1	13	339	7.5	8.0	7.8	1.5	426	chr2L	3871809	exon	CG31957 -	chr2L	3872022	intron	CG31957 -	chr2L	3872235	exon	CG31957 -	chr2L_13_3870001	chr2L_3870001	w[1118]
111	chr2L	4065981	4066012	chr2L	4068881	4068912	Juan	8	2900	18.5	12.0	15.2	0.5	2931	chr2L	4065981	intron	ed +	chr2L	4067446	intron	ed +	chr2L	4068912	intron	ed +	chr2L_8_4065001	chr2L_4065001	w[1118]
115	chr2L	4601638	4601733	chr2L	4609155	4609249	mdg1	19	7516	4.0	4.0	4.0	3.8	7611	chr2L	4601638	intron	dp -	chr2L	4605444	intron	dp -	chr2L	4609249	intron	dp -	chr2L_19_4605001	chr2L_4605001	w[1118]
116	chr2L	4661772	4661799	chr2L	4669427	4669454	opus	17	7655	18.5	10.0	14.2	1.1	7682	chr2L	4661772	intergenic	not near genes	chr2L	4665613	intergenic	not near genes	chr2L	4669454	intergenic	not near genes	chr2L_17_4665001	chr2L_4665001	w[1118]
122	chr2L	4918102	4918157	chr2L	4923250	4923343	jockey	11	5176	13.5	0.0	6.8	1.4	5241	chr2L	4918102	intron	hoe1 -	chr2L	4920722	intron	hoe1 -	chr2L	4923343	intron	hoe1 -	chr2L_11_4920001	chr2L_4920001	w[1118]
129	chr2L	5342711	5342746	chr2L	5345166	5345201	Doc	13	2455	17.0	10.0	13.5	0.9	2490	chr2L	5342711	intergenic	CG12512 -	chr2L	5343956	intergenic	not near genes	chr2L	5345201	intergenic	not near genes	chr2L_13_5340001	chr2L_5340001	w[1118]
144	chr2L	5827652	5827685	chr2L	5836735	5836768	roo	9	9083	11.5	3.0	7.2	1.1	9116	chr2L	5827652	intron	TrissinR +	chr2L	5832210	intron	TrissinR +	chr2L	5836768	intron	TrissinR +	chr2L_9_5830001	chr2L_5830001	w[1118]
156	chr2L	6279577	6279652	chr2L	6279731	6279806	INE-1	21	154	11.5	0.0	5.8	3.1	229	chr2L	6279577	intron	Ddr +	chr2L	6279692	intron	Ddr +	chr2L	6279806	intron	Ddr +	chr2L_21_6275001	chr2L_6275001	w[1118]
161	chr2L	6363086	6363127	chr2L	6366083	6366124	Burdock	22	2997	19.5	4.5	12.0	1.7	3038	chr2L	6363086	intergenic	not near genes	chr2L	6364605	intergenic	not near genes	chr2L	6366124	intergenic	not near genes	chr2L_22_6360001	chr2L_6360001	w[1118]
162	chr2L	6426799	6426831	chr2L	6445134	6445166	roo	14	18335	16.5	11.0	13.8	0.9	18367	chr2L	6426799	3` UTR	CG9527 -	chr2L	6435982	intron	CG9527 -	chr2L	6445166	exon	CG9527 -	chr2L_14_6435001	chr2L_6435001	w[1118]
176	chr2L	6876717	6876752	chr2L	6882983	6883018	diver	7	6266	15.5	2.5	9.0	0.7	6301	chr2L	6876717	intron	Nlg2 +	chr2L	6879868	intron	Nlg2 +	chr2L	6883018	intron	Nlg2 +	chr2L_7_6875001	chr2L_6875001	w[1118]
179	chr2L	6991362	6991405	chr2L	6998560	6998599	HMS-Beagle	14	7194	18.0	4.0	11.0	1.2	7237	chr2L	6991362	intron	uif -	chr2L	6994980	intron	uif -	chr2L	6998599	intron	uif -	chr2L_14_6990001	chr2L_6990001	w[1118]
192	chr2L	7343279	7343353	chr2L	7350469	7350543	roo	9	7190	9.0	12.5	10.8	0.8	7264	chr2L	7343279	intron	Wnt6 +	chr2L	7346911	intron	Wnt6 +	chr2L	7350543	intron	Wnt6 +	chr2L_9_7345001	chr2L_7345001	w[1118]
210	chr2L	7958976	7959068	chr2L	7960462	7960556	pogo	17	1488	4.5	4.0	4.2	3.3	1580	chr2L	7958976	intron	Snoo -	chr2L	7959766	intron	Snoo -	chr2L	7960556	intron	Snoo -	chr2L_17_7955001	chr2L_7955001	w[1118]
212	chr2L	7977025	7977064	chr2L	7984076	7984115	297	14	7051	16.0	6.5	11.2	1.1	7090	chr2L	7977025	intron	Snoo -	chr2L	7980570	intron	Snoo -	chr2L	7984115	intron,5` UTR	Snoo -,CG7231 +	chr2L_14_7980001	chr2L_7980001	w[1118]
223	chr2L	8452360	8452398	chr2L	8461606	8461644	roo	8	9246	9.5	14.0	11.8	0.6	9284	chr2L	8452360	intron	fu12 -	chr2L	8457002	intron	fu12 -	chr2L	8461644	intron	fu12 -	chr2L_8_8455001	chr2L_8455001	w[1118]
224	chr2L	8594406	8594439	chr2L	8601535	8601568	297	7	7129	14.5	11.0	12.8	0.5	7162	chr2L	8594406	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8597987	intron	Sema-1a +	chr2L	8601568	intron	Sema-1a +	chr2L_7_8595001	chr2L_8595001	w[1118]
225	chr2L	8723050	8723092	chr2L	8731502	8731544	Tirant	21	8452	15.0	9.5	12.2	1.6	8494	chr2L	8723050	intron	raw -	chr2L	8727297	intron	raw -	chr2L	8731544	intron	raw -	chr2L_21_8725001	chr2L_8725001	w[1118]
228	chr2L	9000249	9000313	chr2L	9007834	9007906	roo	10	7590	6.0	0.5	3.2	2.4	7657	chr2L	9000249	intergenic	Try29F +	chr2L	9004078	intergenic	not near genes	chr2L	9007906	intergenic	not near genes	chr2L_10_9000001	chr2L_9000001	w[1118]
235	chr2L	9217917	9218004	chr2L	9222779	9222874	Doc	14	4867	6.0	2.0	4.0	2.8	4957	chr2L	9217917	intron	tai +	chr2L	9220396	intron	tai +	chr2L	9222874	intron	tai +	chr2L_14_9220001	chr2L_9220001	w[1118]
246	chr2L	9393434	9393519	chr2L	9396476	9396560	jockey	11	3041	8.0	9.5	8.8	1.1	3126	chr2L	9393434	intron	Shawl -	chr2L	9394997	intron	Shawl -	chr2L	9396560	intron	Shawl -	chr2L_11_9390001	chr2L_9390001	w[1118]
260	chr2L	9973661	9973704	chr2L	9980855	9980898	HMS-Beagle	16	7194	15.0	12.5	13.8	1.1	7237	chr2L	9973661	intergenic	not near genes	chr2L	9977280	intergenic	not near genes	chr2L	9980898	intergenic	not near genes	chr2L_16_9975001	chr2L_9975001	w[1118]
265	chr2L	10156174	10156214	chr2L	10164099	10164139	blood	8	7925	16.0	10.5	13.2	0.6	7965	chr2L	10156174	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160156	intron	CG44153 -	chr2L	10164139	intron	CG44153 -	chr2L_8_10160001	chr2L_10160001	w[1118]
278	chr2L	10592774	10592869	chr2L	10600509	10600611	opus	8	7737	3.0	5.5	4.2	1.5	7837	chr2L	10592774	intron	Trim9 +	chr2L	10596692	intron	Trim9 +	chr2L	10600611	intron	Trim9 +	chr2L_8_10595001	chr2L_10595001	w[1118]
287	chr2L	10862787	10862819	chr2L	10864476	10864508	Rt1c	17	1689	13.5	8.5	11.0	1.4	1721	chr2L	10862787	intron	CR43807 -	chr2L	10863648	intron	CR43807 -	chr2L	10864508	3` UTR	CR43807 -	chr2L_17_10860001	chr2L_10860001	w[1118]
288	chr2L	10876501	10876520	chr2L	10883632	10883651	297	8	7131	17.0	13.0	15.0	0.5	7150	chr2L	10876501	intergenic	not near genes	chr2L	10880076	intergenic	not near genes	chr2L	10883651	intergenic	not near genes	chr2L_8_10880001	chr2L_10880001	w[1118]
292	chr2L	10946897	10946921	chr2L	10956187	10956211	roo	5	9290	16.5	12.5	14.5	0.3	9314	chr2L	10946897	intron	dpr2 -	chr2L	10951554	intron	dpr2 -	chr2L	10956211	intron	dpr2 -	chr2L_5_10950001	chr2L_10950001	w[1118]
294	chr2L	11215082	11215104	chr2L	11218747	11218769	Doc	8	3665	2.0	6.5	4.2	1.5	3687	chr2L	11215082	intron	ab +	chr2L	11216926	intron	ab +	chr2L	11218769	intron	ab +	chr2L_8_11215001	chr2L_11215001	w[1118]
295	chr2L	11315197	11315272	chr2L	11317676	11317751	G2	12	2479	5.0	6.5	5.8	1.8	2554	chr2L	11315197	intergenic	not near genes	chr2L	11316474	intergenic	not near genes	chr2L	11317751	intergenic	not near genes	chr2L_12_11315001	chr2L_11315001	w[1118]
307	chr2L	11540526	11540558	chr2L	11548003	11548035	Tabor	15	7477	2.0	8.0	5.0	2.5	7509	chr2L	11540526	intergenic	not near genes	chr2L	11544280	intergenic	not near genes	chr2L	11548035	intergenic	not near genes	chr2L_15_11540001	chr2L_11540001	w[1118]
310	chr2L	11563576	11563611	chr2L	11568855	11568890	copia	11	5279	15.5	10.5	13.0	0.8	5314	chr2L	11563576	intergenic	not near genes	chr2L	11566233	intergenic	not near genes	chr2L	11568890	intergenic	not near genes	chr2L_11_11565001	chr2L_11565001	w[1118]
312	chr2L	11613990	11614028	chr2L	11615560	11615598	hopper2	15	1570	9.0	5.0	7.0	1.9	1608	chr2L	11613990	intron	kek2 +	chr2L	11614794	intron	kek2 +	chr2L	11615598	intron	kek2 +	chr2L_15_11610001	chr2L_11610001	w[1118]
314	chr2L	11713444	11713483	chr2L	11720987	11721026	blood	14	7543	21.0	7.0	14.0	0.9	7582	chr2L	11713444	intergenic	not near genes	chr2L	11717235	intergenic	not near genes	chr2L	11721026	intergenic	CR44143 +	chr2L_14_11715001	chr2L_11715001	w[1118]
330	chr2L	12067282	12067352	chr2L	12074400	12074470	297	16	7118	7.5	7.5	7.5	1.9	7188	chr2L	12067282	intergenic	not near genes	chr2L	12070876	intergenic	not near genes	chr2L	12074470	intergenic	not near genes	chr2L_16_12070001	chr2L_12070001	w[1118]
350	chr2L	12558261	12558297	chr2L	12565465	12565501	HMS-Beagle	10	7204	10.5	9.0	9.8	0.9	7240	chr2L	12558261	intergenic	not near genes	chr2L	12561881	intergenic	not near genes	chr2L	12565501	intergenic	not near genes	chr2L_10_12560001	chr2L_12560001	w[1118]
354	chr2L	12730998	12731036	chr2L	12735840	12735878	F-element	18	4842	19.0	10.5	14.8	1.1	4880	chr2L	12730998	intron	MRP +	chr2L	12733438	intron	MRP +	chr2L	12735878	intron	MRP +	chr2L_18_12730001	chr2L_12730001	w[1118]
355	chr2L	12739113	12739145	chr2L	12743969	12744001	Doc	15	4856	18.0	13.0	15.5	0.9	4888	chr2L	12739113	exon	MRP +	chr2L	12741557	intron	MRP +	chr2L	12744001	exon	MRP +	chr2L_15_12740001	chr2L_12740001	w[1118]
357	chr2L	12763761	12763787	chr2L	12764048	12764074	BS	9	287	11.0	0.0	5.5	1.4	313	chr2L	12763761	intergenic	not near genes	chr2L	12763918	intergenic	not near genes	chr2L	12764074	intergenic	not near genes	chr2L_9_12760001	chr2L_12760001	w[1118]
359	chr2L	12781739	12781771	chr2L	12789264	12789296	Quasimodo	10	7525	17.0	11.0	14.0	0.7	7557	chr2L	12781739	intergenic	not near genes	chr2L	12785518	intergenic	not near genes	chr2L	12789296	intergenic	not near genes	chr2L_10_12785001	chr2L_12785001	w[1118]
360	chr2L	12791565	12791584	chr2L	12795315	12795334	F-element	12	3750	5.0	16.0	10.5	1.0	3769	chr2L	12791565	intergenic	not near genes	chr2L	12793450	intergenic	not near genes	chr2L	12795334	intergenic	not near genes	chr2L_12_12790001	chr2L_12790001	w[1118]
361	chr2L	12861636	12861670	chr2L	12863178	12863212	hobo	9	1542	21.5	6.0	13.8	0.6	1576	chr2L	12861636	intergenic	not near genes	chr2L	12862424	intergenic	not near genes	chr2L	12863212	intergenic	not near genes	chr2L_9_12860001	chr2L_12860001	w[1118]
362	chr2L	12893967	12893984	chr2L	12895509	12895526	hobo	6	1542	14.0	9.0	11.5	0.5	1559	chr2L	12893967	intergenic	not near genes	chr2L	12894746	intergenic	not near genes	chr2L	12895526	intergenic	not near genes	chr2L_6_12890001	chr2L_12890001	w[1118]
363	chr2L	12933791	12933828	chr2L	12941333	12941370	blood	10	7542	16.5	6.5	11.5	0.8	7579	chr2L	12933791	intergenic	not near genes	chr2L	12937580	intergenic	not near genes	chr2L	12941370	intergenic	not near genes	chr2L_10_12935001	chr2L_12935001	w[1118]
369	chr2L	13405587	13405628	chr2L	13410459	13410500	Doc	25	4872	22.0	11.5	16.8	1.4	4913	chr2L	13405587	exon	CG7110 +	chr2L	13408044	intron	CG7110 +	chr2L	13410500	intron	CG7110 +	chr2L_25_13405001	chr2L_13405001	w[1118]
370	chr2L	13449400	13449439	chr2L	13456911	13456950	Quasimodo	16	7511	19.0	11.0	15.0	1.0	7550	chr2L	13449400	intron,intron	CG42784 +,Hsp60D -	chr2L	13453175	intron	CG42784 +	chr2L	13456950	intron	CG42784 +	chr2L_16_13450001	chr2L_13450001	w[1118]
371	chr2L	13481396	13481418	chr2L	13482078	13482100	jockey	11	682	17.5	10.5	14.0	0.7	704	chr2L	13481396	intron	CG42784 +	chr2L	13481748	intron	CG42784 +	chr2L	13482100	intron	CG42784 +	chr2L_11_13480001	chr2L_13480001	w[1118]
372	chr2L	13522076	13522100	chr2L	13527674	13527693	Transpac	5	5596	0.5	10.0	5.2	0.8	5617	chr2L	13522076	intron	B4 -	chr2L	13524884	intron	B4 -	chr2L	13527693	intron	B4 -	chr2L_5_13520001	chr2L_13520001	w[1118]
378	chr2L	13761749	13761786	chr2L	13762935	13762972	Doc	10	1186	17.5	13.0	15.2	0.6	1223	chr2L	13761749	intron	TM9SF4 +	chr2L	13762360	intron	TM9SF4 +	chr2L	13762972	intron	TM9SF4 +	chr2L_10_13760001	chr2L_13760001	w[1118]
381	chr2L	13853033	13853053	chr2L	13862258	13862278	roo	11	9225	21.5	0.0	10.8	0.9	9245	chr2L	13853033	intron	CenG1A +	chr2L	13857656	intron	CenG1A +	chr2L	13862278	intron	CenG1A +	chr2L_11_13855001	chr2L_13855001	w[1118]
395	chr2L	14465538	14465576	chr2L	14469090	14469128	hopper2	12	3552	0.5	7.0	3.8	2.5	3590	chr2L	14465538	intergenic	not near genes	chr2L	14467333	intergenic	not near genes	chr2L	14469128	intergenic	not near genes	chr2L_12_14465001	chr2L_14465001	w[1118]
401	chr2L	14618845	14618889	chr2L	14619301	14619345	jockey	8	456	7.5	5.0	6.2	1.1	500	chr2L	14618845	intron,3` UTR,3` UTR	osp -,Adh +,Adhr +	chr2L	14619095	intron	osp -	chr2L	14619345	intron	osp -	chr2L_8_14615001	chr2L_14615001	w[1118]
403	chr2L	14642514	14642546	chr2L	14651752	14651784	roo	10	9238	19.5	7.0	13.2	0.7	9270	chr2L	14642514	intron	osp -	chr2L	14647149	intron	osp -	chr2L	14651784	intron	osp -	chr2L_10_14645001	chr2L_14645001	w[1118]
407	chr2L	14803815	14803848	chr2L	14809093	14809126	copia	9	5278	18.0	6.0	12.0	0.7	5311	chr2L	14803815	intergenic	not near genes	chr2L	14806470	intergenic	not near genes	chr2L	14809126	intergenic	not near genes	chr2L_9_14805001	chr2L_14805001	w[1118]
409	chr2L	14889886	14889926	chr2L	14890386	14890426	jockey	7	500	9.5	6.0	7.8	0.8	540	chr2L	14889886	intergenic	not near genes	chr2L	14890156	intergenic	not near genes	chr2L	14890426	intergenic	not near genes	chr2L_7_14890001	chr2L_14890001	w[1118]
410	chr2L	14984324	14984353	chr2L	14992001	14992030	opus	9	7677	21.5	14.0	17.8	0.5	7706	chr2L	14984324	intron	mol -	chr2L	14988177	intron	mol -	chr2L	14992030	intron	mol -	chr2L_9_14985001	chr2L_14985001	w[1118]
428	chr2L	15445988	15446026	chr2L	15453532	15453570	blood	15	7544	13.5	0.0	6.8	1.9	7582	chr2L	15445988	intergenic	not near genes	chr2L	15449779	intergenic	not near genes	chr2L	15453570	intergenic	not near genes	chr2L_15_15445001	chr2L_15445001	w[1118]
433	chr2L	15586347	15586378	chr2L	15593474	15593505	297	10	7127	18.0	11.0	14.5	0.6	7158	chr2L	15586347	intergenic	not near genes	chr2L	15589926	intergenic	not near genes	chr2L	15593505	intergenic	not near genes	chr2L_10_15585001	chr2L_15585001	w[1118]
447	chr2L	15955962	15955996	chr2L	15957504	15957538	hobo	18	1542	21.5	11.5	16.5	1.0	1576	chr2L	15955962	intron	beat-Ib -	chr2L	15956750	intron	beat-Ib -	chr2L	15957538	intron	beat-Ib -	chr2L_18_15955001	chr2L_15955001	w[1118]
451	chr2L	16120074	16120087	chr2L	16120228	16120241	INE-1	6	154	15.0	6.0	10.5	0.5	167	chr2L	16120074	intergenic	not near genes	chr2L	16120158	intergenic	not near genes	chr2L	16120241	intergenic	not near genes	chr2L_6_16120001	chr2L_16120001	w[1118]
452	chr2L	16141105	16141138	chr2L	16146387	16146420	copia	11	5282	16.0	8.5	12.2	0.8	5315	chr2L	16141105	intergenic	not near genes	chr2L	16143762	intergenic	not near genes	chr2L	16146420	intergenic	not near genes	chr2L_11_16140001	chr2L_16140001	w[1118]
453	chr2L	16153668	16153754	chr2L	16160811	16160897	297	14	7143	5.0	7.5	6.2	1.9	7229	chr2L	16153668	intergenic	not near genes	chr2L	16157282	intergenic	not near genes	chr2L	16160897	intergenic	not near genes	chr2L_14_16155001	chr2L_16155001	w[1118]
462	chr2L	16511899	16511988	chr2L	16519088	16519176	HMS-Beagle	15	7189	8.5	6.0	7.2	1.8	7277	chr2L	16511899	intron	CG5953 -	chr2L	16515538	intron	CG5953 -	chr2L	16519176	intron	CG5953 -	chr2L_15_16515001	chr2L_16515001	w[1118]
475	chr2L	16958043	16958080	chr2L	16962906	16962943	Doc	12	4863	14.0	7.0	10.5	1.0	4900	chr2L	16958043	intergenic	not near genes	chr2L	16960493	intergenic	not near genes	chr2L	16962943	intergenic	not near genes	chr2L_12_16960001	chr2L_16960001	w[1118]
483	chr2L	17144264	17144303	chr2L	17152007	17152046	opus	10	7743	13.0	6.0	9.5	1.0	7782	chr2L	17144264	intron,intron	CG34106 +,beat-IIIa +	chr2L	17148155	intron,intron	CG34106 +,beat-IIIa +	chr2L	17152046	intron,intron	CG34106 +,beat-IIIa +	chr2L_10_17145001	chr2L_17145001	w[1118]
485	chr2L	17167503	17167544	chr2L	17167819	17167860	pogo	10	316	9.5	9.5	9.5	1.0	357	chr2L	17167503	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167682	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167860	intron,intron	CG34106 +,beat-IIIa +	chr2L_10_17165001	chr2L_17165001	w[1118]
486	chr2L	17199102	17199134	chr2L	17200644	17200676	hobo	13	1542	18.5	6.0	12.2	1.0	1574	chr2L	17199102	intron	beat-IIIc -	chr2L	17199889	intron	beat-IIIc -	chr2L	17200676	intron	beat-IIIc -	chr2L_13_17195001	chr2L_17195001	w[1118]
491	chr2L	17273144	17273170	chr2L	17278002	17278028	F-element	8	4858	12.0	3.0	7.5	0.9	4884	chr2L	17273144	intergenic	not near genes	chr2L	17275586	intergenic	not near genes	chr2L	17278028	intergenic	not near genes	chr2L_8_17275001	chr2L_17275001	w[1118]
496	chr2L	17335486	17335523	chr2L	17336727	17336764	1360	20	1241	17.0	10.0	13.5	1.4	1278	chr2L	17335486	intergenic	not near genes	chr2L	17336125	intergenic	not near genes	chr2L	17336764	intergenic	not near genes	chr2L_20_17335001	chr2L_17335001	w[1118]
503	chr2L	17431938	17432038	chr2L	17432120	17432220	1360	10	182	0.0	7.5	3.8	2.1	282	chr2L	17431938	intron	Dif -	chr2L	17432079	intron	Dif -	chr2L	17432220	intron	Dif -	chr2L_10_17430001	chr2L_17430001	w[1118]
506	chr2L	17687443	17687478	chr2L	17692263	17692298	F-element	13	4820	14.5	7.5	11.0	1.1	4855	chr2L	17687443	intron	CadN -	chr2L	17689870	intron	CadN -	chr2L	17692298	intron	CadN -	chr2L_13_17685001	chr2L_17685001	w[1118]
508	chr2L	17727795	17727824	chr2L	17729337	17729366	hobo	9	1542	12.5	9.0	10.8	0.8	1571	chr2L	17727795	intron	CadN -	chr2L	17728580	intron	CadN -	chr2L	17729366	intron	CadN -	chr2L_9_17725001	chr2L_17725001	w[1118]
513	chr2L	17819865	17819897	chr2L	17825143	17825175	copia	12	5278	14.0	7.0	10.5	1.0	5310	chr2L	17819865	intron	CadN2 -	chr2L	17822520	intron	CadN2 -	chr2L	17825175	intron	CadN2 -	chr2L_12_17820001	chr2L_17820001	w[1118]
517	chr2L	17911909	17911934	chr2L	17914170	17914195	pogo	8	2261	12.0	10.0	11.0	0.7	2286	chr2L	17911909	intergenic	not near genes	chr2L	17913052	intergenic	not near genes	chr2L	17914195	intergenic	CG43271 -	chr2L_8_17910001	chr2L_17910001	w[1118]
519	chr2L	17951887	17951924	chr2L	17953429	17953466	hobo	12	1542	13.5	13.5	13.5	0.8	1579	chr2L	17951887	intergenic	CR44398 -,CR44397 -	chr2L	17952676	intergenic	not near genes	chr2L	17953466	intergenic	not near genes	chr2L_12_17950001	chr2L_17950001	w[1118]
525	chr2L	18051814	18051850	chr2L	18061036	18061072	roo	12	9222	14.5	7.0	10.8	1.0	9258	chr2L	18051814	intron	rdo +	chr2L	18056443	intron	rdo +	chr2L	18061072	intron	rdo +	chr2L_12_18055001	chr2L_18055001	w[1118]
533	chr2L	18407983	18407999	chr2L	18412842	18412858	Doc	8	4859	18.5	14.0	16.2	0.5	4875	chr2L	18407983	intergenic	not near genes	chr2L	18410420	intergenic	not near genes	chr2L	18412858	intergenic	not near genes	chr2L_8_18410001	chr2L_18410001	w[1118]
544	chr2L	19147307	19147343	chr2L	19154417	19154453	297	15	7110	23.5	12.5	18.0	0.8	7146	chr2L	19147307	intron	brat +	chr2L	19150880	intron	brat +	chr2L	19154453	intron	brat +	chr2L_15_19150001	chr2L_19150001	w[1118]
547	chr2L	19272396	19272443	chr2L	19272640	19272687	BS	7	244	14.5	0.0	7.2	0.9	291	chr2L	19272396	3` UTR	CR44190 -	chr2L	19272542	intron	CR44190 -	chr2L	19272687	intron	CR44190 -	chr2L_7_19270001	chr2L_19270001	w[1118]
550	chr2L	19344959	19344980	chr2L	19357243	19357264	blood	6	12284	13.5	10.5	12.0	0.5	12305	chr2L	19344959	intron	dnt -	chr2L	19351112	intron	dnt -	chr2L	19357264	intron	dnt -	chr2L_6_19350001	chr2L_19350001	w[1118]
565	chr2L	19620034	19620071	chr2L	19621098	19621135	jockey	17	1064	16.0	6.5	11.2	1.4	1101	chr2L	19620034	intron	Lar +	chr2L	19620584	intron	Lar +	chr2L	19621135	intron	Lar +	chr2L_17_19620001	chr2L_19620001	w[1118]
567	chr2L	19652506	19652530	chr2L	19674017	19674041	opus	7	21511	19.5	8.5	14.0	0.5	21535	chr2L	19652506	intron	Lar +	chr2L	19663274	intron	Lar +	chr2L	19674041	intron	Lar +	chr2L_7_19660001	chr2L_19660001	w[1118]
568	chr2L	19703487	19703513	chr2L	19712698	19712724	roo	13	9211	15.0	19.5	17.2	0.7	9237	chr2L	19703487	intron	Lar +	chr2L	19708106	intron	Lar +	chr2L	19712724	intron	Lar +	chr2L_13_19705001	chr2L_19705001	w[1118]
569	chr2L	19737291	19737322	chr2L	19740835	19740866	1360	7	3544	16.5	6.0	11.2	0.6	3575	chr2L	19737291	intergenic	Nf-YB +	chr2L	19739078	intergenic	not near genes	chr2L	19740866	intergenic	not near genes	chr2L_7_19735001	chr2L_19735001	w[1118]
570	chr2L	19762742	19762779	chr2L	19763059	19763096	pogo	16	317	16.5	9.5	13.0	1.1	354	chr2L	19762742	exon	fbp -	chr2L	19762919	intron	fbp -	chr2L	19763096	intron	fbp -	chr2L_16_19760001	chr2L_19760001	w[1118]
582	chr2L	20005813	20005849	chr2L	20010964	20011000	flea	13	5151	21.0	14.0	17.5	0.7	5187	chr2L	20005813	intron	CG43861 -	chr2L	20008406	intron	CG43861 -	chr2L	20011000	intron	CG43861 -	chr2L_13_20005001	chr2L_20005001	w[1118]
588	chr2L	20272057	20272091	chr2L	20282843	20282877	copia	13	10786	14.0	6.0	10.0	1.2	10820	chr2L	20272057	intergenic	not near genes	chr2L	20277467	intergenic	not near genes	chr2L	20282877	intergenic	not near genes	chr2L_13_20275001	chr2L_20275001	w[1118]
590	chr2L	20303106	20303139	chr2L	20310649	20310682	blood	9	7543	19.0	16.0	17.5	0.5	7576	chr2L	20303106	intergenic	not near genes	chr2L	20306894	intergenic	not near genes	chr2L	20310682	intergenic	not near genes	chr2L_9_20305001	chr2L_20305001	w[1118]
591	chr2L	20372177	20372205	chr2L	20372493	20372521	pogo	13	316	19.0	16.0	17.5	0.7	344	chr2L	20372177	intergenic	Ugt37a1 -	chr2L	20372349	intergenic	Ugt37a1 -	chr2L	20372521	exon	Ugt37a1 -	chr2L_13_20370001	chr2L_20370001	w[1118]
597	chr2L	20568593	20568632	chr2L	20569058	20569097	X-element	16	465	17.5	3.5	10.5	1.4	504	chr2L	20568593	intron	CR45347 +	chr2L	20568845	intron	CR45347 +	chr2L	20569097	intron	CR45347 +	chr2L_16_20565001	chr2L_20565001	w[1118]
598	chr2L	20576169	20576196	chr2L	20583712	20583739	blood	9	7543	8.0	8.5	8.2	1.0	7570	chr2L	20576169	intergenic	CR45347 +	chr2L	20579954	intergenic	not near genes	chr2L	20583739	3` UTR	CR44909 -	chr2L_9_20575001	chr2L_20575001	w[1118]
604	chr2L	20835752	20835785	chr2L	20836544	20836577	Quasimodo	13	792	15.0	10.0	12.5	1.0	825	chr2L	20835752	5` UTR	Oseg5 -	chr2L	20836164	intergenic	Oseg5 -,Spn38F -	chr2L	20836577	intergenic	Spn38F -	chr2L_13_20835001	chr2L_20835001	w[1118]
607	chr2L	20891461	20891546	chr2L	20896637	20896722	jockey	15	5176	5.0	6.0	5.5	2.3	5261	chr2L	20891461	intron,intron	CG43739 -,sky -	chr2L	20894092	intron,intron	CG43739 -,sky -	chr2L	20896722	intron,intron	CG43739 -,sky -	chr2L_15_20890001	chr2L_20890001	w[1118]
608	chr2L	20901388	20901429	chr2L	20902627	20902668	1360	5	1239	17.5	8.0	12.8	0.4	1280	chr2L	20901388	intron,intron	CG43739 -,sky -	chr2L	20902028	intron,intron	CG43739 -,sky -	chr2L	20902668	intron,intron	CG43739 -,sky -	chr2L_5_20900001	chr2L_20900001	w[1118]
613	chr2L	20976591	20976621	chr2L	20981481	20981511	X-element	15	4890	16.0	9.0	12.5	1.1	4920	chr2L	20976591	intron	CG42238 -	chr2L	20979051	intron	CG42238 -	chr2L	20981511	intron	CG42238 -	chr2L_15_20975001	chr2L_20975001	w[1118]
614	chr2L	21020215	21020254	chr2L	21023967	21024006	NOF	14	3752	18.5	10.0	14.2	0.9	3791	chr2L	21020215	intron	CG42238 -	chr2L	21022110	intron	CG42238 -	chr2L	21024006	intron	CG42238 -	chr2L_14_21020001	chr2L_21020001	w[1118]
615	chr2L	21041078	21041113	chr2L	21049414	21049449	Tirant	11	8336	13.5	10.5	12.0	0.8	8371	chr2L	21041078	intron	CG42238 -	chr2L	21045264	intron	CG42238 -	chr2L	21049449	intron	CG42238 -	chr2L_11_21045001	chr2L_21045001	w[1118]
623	chr2L	21337792	21337813	chr2L	21338332	21338353	BS	11	540	13.5	12.5	13.0	0.8	561	chr2L	21337792	intron	dimm +	chr2L	21338072	intron	dimm +	chr2L	21338353	intron	dimm +	chr2L_11_21335001	chr2L_21335001	w[1118]
624	chr2L	21347488	21347526	chr2L	21355035	21355072	blood	13	7547	16.0	9.5	12.8	0.9	7584	chr2L	21347488	intron	Tsp39D +	chr2L	21351280	intron	Tsp39D +	chr2L	21355072	intron	Tsp39D +	chr2L_13_21350001	chr2L_21350001	w[1118]
628	chr2L	21596982	21596996	chr2L	21604801	21604815	roo	10	7819	13.0	13.5	13.2	0.7	7833	chr2L	21596982	intergenic	not near genes	chr2L	21600898	intergenic	not near genes	chr2L	21604815	intergenic	not near genes	chr2L_10_21600001	chr2L_21600001	w[1118]
629	chr2L	21691770	21691784	chr2L	21698315	21698329	Burdock	6	6545	18.5	1.5	10.0	0.5	6559	chr2L	21691770	intron	CG31619 +	chr2L	21695050	intron	CG31619 +	chr2L	21698329	intron	CG31619 +	chr2L_6_21695001	chr2L_21695001	w[1118]
639	chr2L	21981622	21981660	chr2L	21990862	21990900	roo	16	9240	20.5	11.5	16.0	0.9	9278	chr2L	21981622	exon	CG2528 -	chr2L	21986261	intron	CG2528 -	chr2L	21990900	exon	CG2528 -	chr2L_16_21985001	chr2L_21985001	w[1118]
644	chr2L	22082176	22082213	chr2L	22082342	22082379	INE-1	13	166	13.0	12.0	12.5	1.0	203	chr2L	22082176	intergenic	not near genes	chr2L	22082278	intergenic	not near genes	chr2L	22082379	intergenic	not near genes	chr2L_13_22080001	chr2L_22080001	w[1118]
647	chr2L	22258563	22258597	chr2L	22260762	22260796	G6	18	2199	13.0	10.0	11.5	1.4	2233	chr2L	22258563	intergenic	Tif-IA +	chr2L	22259680	intergenic	not near genes	chr2L	22260796	intergenic	not near genes	chr2L_18_22255001	chr2L_22255001	w[1118]
649	chr2L	22548860	22548873	chr2L	22550132	22550146	1360	9	1273	9.5	7.5	8.5	0.9	1286	chr2L	22548860	intergenic	CG17490 +	chr2L	22549503	intergenic	not near genes	chr2L	22550146	intergenic	CG17493 +	chr2L_9_22545001	chr2L_22545001	w[1118]
650	chr2L	22581911	22581946	chr2L	22583775	22583810	S-element	11	1864	18.5	10.5	14.5	0.7	1899	chr2L	22581911	intron	CG17494 +	chr2L	22582860	intron	CG17494 +	chr2L	22583810	intron	CG17494 +	chr2L_11_22580001	chr2L_22580001	w[1118]
652	chr2L	22776365	22776397	chr2L	22778229	22778261	S-element	10	1864	16.0	12.0	14.0	0.7	1896	chr2L	22776365	intergenic	not near genes	chr2L	22777313	intergenic	not near genes	chr2L	22778261	intergenic	not near genes	chr2L_10_22775001	chr2L_22775001	w[1118]
654	chr2R	469909	469930	chr2R	473225	473246	F-element	4	3316	5.0	7.0	6.0	0.6	3337	chr2R	469909	intergenic	not near genes	chr2R	471578	intergenic	not near genes	chr2R	473246	intergenic	not near genes	chr2R_4_470001	chr2R_470001	w[1118]
655	chr2R	1516542	1516584	chr2R	1521345	1521387	1731	39	4803	64.0	61.0	62.5	0.6	4845	chr2R	1516542	exon	Maf1 -	chr2R	1518964	intron	Maf1 -	chr2R	1521387	5` UTR	Maf1 -	chr2R_39_1515001	chr2R_1515001	w[1118]
657	chr2R	2498924	2498955	chr2R	2508146	2508177	roo	8	9222	19.0	13.0	16.0	0.5	9253	chr2R	2498924	intron	MFS17 -	chr2R	2503550	intron	MFS17 -	chr2R	2508177	intron	MFS17 -	chr2R_8_2500001	chr2R_2500001	w[1118]
658	chr2R	2590019	2590055	chr2R	2590855	2590891	copia	6	836	45.5	37.0	41.2	0.1	872	chr2R	2590019	intergenic	not near genes	chr2R	2590455	intergenic	not near genes	chr2R	2590891	intergenic	not near genes	chr2R_6_2590001	chr2R_2590001	w[1118]
659	chr2R	3144044	3144107	chr2R	3393397	3393460	Doc	9	249353	22.0	21.0	21.5	0.4	249416	chr2R	3144044	intron	CG42596 +	chr2R	3268752	intergenic	not near genes	chr2R	3393460	intergenic	not near genes	chr2R_9_3265001	chr2R_3265001	w[1118]
661	chr2R	3532558	3532592	chr2R	3536076	3536110	Doc	5	3518	8.0	5.5	6.8	0.6	3552	chr2R	3532558	intergenic	not near genes	chr2R	3534334	intergenic	not near genes	chr2R	3536110	intergenic	not near genes	chr2R_5_3530001	chr2R_3530001	w[1118]
668	chr2R	4838836	4838850	chr2R	4840434	4840448	transib2	4	1598	18.5	19.0	18.8	0.2	1612	chr2R	4838836	intergenic	not near genes	chr2R	4839642	intergenic	not near genes	chr2R	4840448	intergenic	not near genes	chr2R_4_4835001	chr2R_4835001	w[1118]
669	chr2R	4870670	4870743	chr2R	4871256	4871329	R1A1-element	13	586	6.0	5.5	5.8	1.9	659	chr2R	4870670	intergenic	not near genes	chr2R	4871000	intergenic	not near genes	chr2R	4871329	intergenic	not near genes	chr2R_13_4870001	chr2R_4870001	w[1118]
678	chr2R	5322562	5322599	chr2R	5323049	5323086	INE-1	8	487	12.0	7.0	9.5	0.8	524	chr2R	5322562	intron	sxc +	chr2R	5322824	intron	sxc +	chr2R	5323086	intron	sxc +	chr2R_8_5320001	chr2R_5320001	w[1118]
680	chr2R	5417933	5417971	chr2R	5420640	5420678	Burdock	14	2707	15.0	9.0	12.0	1.1	2745	chr2R	5417933	intron	laccase2 +	chr2R	5419306	intron	laccase2 +	chr2R	5420678	intron	laccase2 +	chr2R_14_5415001	chr2R_5415001	w[1118]
686	chr2R	5869214	5869249	chr2R	5874365	5874400	flea	17	5151	15.5	12.5	14.0	1.1	5186	chr2R	5869214	intergenic	not near genes	chr2R	5871807	intergenic	not near genes	chr2R	5874400	intergenic	not near genes	chr2R_17_5870001	chr2R_5870001	w[1118]
689	chr2R	5902100	5902137	chr2R	5909734	5909771	17.6	8	7634	16.0	11.5	13.8	0.5	7671	chr2R	5902100	5` UTR	CG43366 +	chr2R	5905936	intron	CG43366 +	chr2R	5909771	intron	CG43366 +	chr2R_8_5905001	chr2R_5905001	w[1118]
690	chr2R	6096656	6096693	chr2R	6101929	6101966	BS	15	5273	16.5	12.0	14.2	1.0	5310	chr2R	6096656	intron	EcR -	chr2R	6099311	intron	EcR -	chr2R	6101966	intron	EcR -	chr2R_15_6095001	chr2R_6095001	w[1118]
694	chr2R	6494471	6494500	chr2R	6499308	6499337	F-element	6	4837	12.0	9.0	10.5	0.5	4866	chr2R	6494471	intergenic	not near genes	chr2R	6496904	intergenic	not near genes	chr2R	6499337	intergenic	not near genes	chr2R_6_6495001	chr2R_6495001	w[1118]
706	chr2R	7139860	7139868	chr2R	7141427	7141435	hopper2	4	1567	17.0	6.5	11.8	0.3	1575	chr2R	7139860	intergenic	not near genes	chr2R	7140648	intergenic	not near genes	chr2R	7141435	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	w[1118]
709	chr2R	7196507	7196546	chr2R	7201357	7201396	F-element	16	4850	17.5	8.5	13.0	1.1	4889	chr2R	7196507	intron	pk +	chr2R	7198952	intron	pk +	chr2R	7201396	intron	pk +	chr2R_16_7195001	chr2R_7195001	w[1118]
710	chr2R	7235763	7235782	chr2R	7240930	7240949	jockey	4	5167	21.0	0.5	10.8	0.3	5186	chr2R	7235763	intergenic	not near genes	chr2R	7238356	intergenic	not near genes	chr2R	7240949	intergenic	not near genes	chr2R_4_7235001	chr2R_7235001	w[1118]
714	chr2R	7434834	7434866	chr2R	7439210	7439242	Juan	16	4376	23.5	15.5	19.5	0.8	4408	chr2R	7434834	3` UTR	so +	chr2R	7437038	intergenic	not near genes	chr2R	7439242	intergenic	not near genes	chr2R_16_7435001	chr2R_7435001	w[1118]
719	chr2R	7608347	7608444	chr2R	7613625	7613699	I-element	13	5274	5.5	0.0	2.8	3.4	5352	chr2R	7608347	intron	CG1358 -	chr2R	7611023	intron	CG1358 -	chr2R	7613699	intron	CG1358 -	chr2R_13_7610001	chr2R_7610001	w[1118]
727	chr2R	7815616	7815650	chr2R	7822160	7822194	Burdock	15	6544	13.0	11.5	12.2	1.1	6578	chr2R	7815616	intergenic	CG1882 +	chr2R	7818905	intergenic	not near genes	chr2R	7822194	3` UTR	cathD -	chr2R_15_7815001	chr2R_7815001	w[1118]
730	chr2R	7862155	7862251	chr2R	7867346	7867441	flea	11	5189	0.0	10.0	5.0	1.8	5286	chr2R	7862155	intron	Dgk -	chr2R	7864798	intron	Dgk -	chr2R	7867441	intron	Dgk -	chr2R_11_7860001	chr2R_7860001	w[1118]
732	chr2R	7869129	7869156	chr2R	7873990	7874017	Doc	7	4861	15.5	10.0	12.8	0.5	4888	chr2R	7869129	intron	Dgk -	chr2R	7871573	intron	Dgk -	chr2R	7874017	intron	Dgk -	chr2R_7_7870001	chr2R_7870001	w[1118]
737	chr2R	8160878	8160929	chr2R	8161043	8161093	1360	20	165	13.0	13.0	13.0	1.4	215	chr2R	8160878	exon	CG8708 -	chr2R	8160986	intron	CG8708 -	chr2R	8161093	intron	CG8708 -	chr2R_20_8160001	chr2R_8160001	w[1118]
744	chr2R	8330806	8330841	chr2R	8331367	8331402	roo	13	561	14.0	11.0	12.5	1.0	596	chr2R	8330806	intron	pdm3 +	chr2R	8331104	intron	pdm3 +	chr2R	8331402	intron	pdm3 +	chr2R_13_8330001	chr2R_8330001	w[1118]
746	chr2R	8398149	8398185	chr2R	8403005	8403041	Doc	13	4856	15.5	10.0	12.8	0.9	4892	chr2R	8398149	exon	CG2121 -	chr2R	8400595	intron	CG2121 -	chr2R	8403041	intron	CG2121 -	chr2R_13_8400001	chr2R_8400001	w[1118]
748	chr2R	8416242	8416319	chr2R	8417141	8417216	I-element	8	898	7.5	5.0	6.2	1.1	974	chr2R	8416242	intergenic	not near genes	chr2R	8416729	intergenic	CG43296 -	chr2R	8417216	3` UTR	CG43296 -	chr2R_8_8415001	chr2R_8415001	w[1118]
756	chr2R	8565989	8566022	chr2R	8567010	8567043	1360	14	1021	19.0	11.5	15.2	0.9	1054	chr2R	8565989	5` UTR	Cyp6a14 -	chr2R	8566516	5` UTR	Cyp6a14 -	chr2R	8567043	5` UTR	Cyp6a14 -	chr2R_14_8565001	chr2R_8565001	w[1118]
759	chr2R	8722702	8722732	chr2R	8723018	8723048	pogo	7	316	13.0	4.5	8.8	0.7	346	chr2R	8722702	intron	CG14767 -	chr2R	8722875	intron	CG14767 -	chr2R	8723048	intron	CG14767 -	chr2R_7_8720001	chr2R_8720001	w[1118]
761	chr2R	8777848	8777939	chr2R	8784127	8784218	diver	14	6279	6.5	5.0	5.8	2.1	6370	chr2R	8777848	intergenic	not near genes	chr2R	8781033	intergenic	not near genes	chr2R	8784218	intergenic	not near genes	chr2R_14_8780001	chr2R_8780001	w[1118]
769	chr2R	9151237	9151279	chr2R	9157782	9157824	Burdock	13	6545	11.5	5.5	8.5	1.4	6587	chr2R	9151237	intron	CG30345 +	chr2R	9154530	intergenic	not near genes	chr2R	9157824	intergenic	CG8008 -	chr2R_13_9150001	chr2R_9150001	w[1118]
770	chr2R	9212631	9212670	chr2R	9213192	9213231	roo	18	561	17.5	6.5	12.0	1.4	600	chr2R	9212631	intergenic	CR45309 +	chr2R	9212931	intergenic	CR45309 +	chr2R	9213231	5` UTR	CR45309 +	chr2R_18_9210001	chr2R_9210001	w[1118]
778	chr2R	9480020	9480040	chr2R	9490626	9490646	roo	9	10606	18.0	14.0	16.0	0.5	10626	chr2R	9480020	intergenic	not near genes	chr2R	9485333	intergenic	not near genes	chr2R	9490646	intergenic	not near genes	chr2R_9_9485001	chr2R_9485001	w[1118]
785	chr2R	9726555	9726594	chr2R	9734181	9734220	17.6	13	7626	10.5	9.5	10.0	1.2	7665	chr2R	9726555	intron	sqa -	chr2R	9730388	intron	sqa -	chr2R	9734220	intron	sqa -	chr2R_13_9730001	chr2R_9730001	w[1118]
787	chr2R	9945377	9945416	chr2R	9945648	9945687	BS	14	271	16.0	9.5	12.8	1.0	310	chr2R	9945377	intron	Mef2 -	chr2R	9945532	intron	Mef2 -	chr2R	9945687	intron	Mef2 -	chr2R_14_9945001	chr2R_9945001	w[1118]
790	chr2R	10005793	10005828	chr2R	10007033	10007068	1360	13	1240	16.0	9.5	12.8	0.9	1275	chr2R	10005793	intron	Pka-R2 -	chr2R	10006430	intron	Pka-R2 -	chr2R	10007068	intron	Pka-R2 -	chr2R_13_10005001	chr2R_10005001	w[1118]
799	chr2R	10176819	10176861	chr2R	10186061	10186103	roo	15	9242	11.5	4.0	7.8	1.7	9284	chr2R	10176819	intron	KCNQ -	chr2R	10181461	intron	KCNQ -	chr2R	10186103	intron	KCNQ -	chr2R_15_10180001	chr2R_10180001	w[1118]
815	chr2R	10585494	10585580	chr2R	10594152	10594238	Tirant	12	8658	8.5	8.5	8.5	1.3	8744	chr2R	10585494	intron	psq +	chr2R	10589866	intron	psq +	chr2R	10594238	intron	psq +	chr2R_12_10585001	chr2R_10585001	w[1118]
830	chr2R	10979610	10979631	chr2R	10980153	10980174	297	9	543	17.0	11.0	14.0	0.6	564	chr2R	10979610	intergenic	not near genes	chr2R	10979892	intergenic	not near genes	chr2R	10980174	intergenic	not near genes	chr2R_9_10975001	chr2R_10975001	w[1118]
831	chr2R	11009754	11009797	chr2R	11019003	11019046	roo	15	9249	15.5	5.5	10.5	1.3	9292	chr2R	11009754	intron	luna -	chr2R	11014400	intron	luna -	chr2R	11019046	intron	luna -	chr2R_15_11010001	chr2R_11010001	w[1118]
832	chr2R	11019812	11019842	chr2R	11024953	11024983	jockey	11	5141	21.5	8.0	14.8	0.7	5171	chr2R	11019812	intron	luna -	chr2R	11022398	intron	luna -	chr2R	11024983	intron	luna -	chr2R_11_11020001	chr2R_11020001	w[1118]
840	chr2R	11207759	11207781	chr2R	11208027	11208049	BS	7	268	23.0	18.5	20.8	0.3	290	chr2R	11207759	intron	shn +	chr2R	11207904	intron	shn +	chr2R	11208049	intron	shn +	chr2R_7_11205001	chr2R_11205001	w[1118]
842	chr2R	11297565	11297603	chr2R	11301964	11302002	flea	10	4399	12.0	4.5	8.2	1.1	4437	chr2R	11297565	intergenic	CG42336 -	chr2R	11299784	intergenic	not near genes	chr2R	11302002	5` UTR	CG7741 +	chr2R_10_11295001	chr2R_11295001	w[1118]
845	chr2R	11415458	11415494	chr2R	11418682	11418718	opus	9	3224	17.0	13.0	15.0	0.6	3260	chr2R	11415458	intron,3` UTR	Drip -,CG7763 +	chr2R	11417088	intron	Drip -	chr2R	11418718	intron	Drip -	chr2R_9_11415001	chr2R_11415001	w[1118]
848	chr2R	11472584	11472627	chr2R	11473856	11473899	pogo	16	1272	16.0	10.5	13.2	1.1	1315	chr2R	11472584	intergenic	not near genes	chr2R	11473242	intergenic	not near genes	chr2R	11473899	intergenic	not near genes	chr2R_16_11470001	chr2R_11470001	w[1118]
869	chr2R	12501632	12501666	chr2R	12503869	12503903	Rt1c	9	2237	10.5	14.0	12.2	0.7	2271	chr2R	12501632	intron	fdl -	chr2R	12502768	intron	fdl -	chr2R	12503903	intron	fdl -	chr2R_9_12500001	chr2R_12500001	w[1118]
875	chr2R	12707450	12707485	chr2R	12715891	12715926	roo	11	8441	18.5	0.0	9.2	1.1	8476	chr2R	12707450	intron	CG42663 +	chr2R	12711688	intron	CG42663 +	chr2R	12715926	intron	CG42663 +	chr2R_11_12710001	chr2R_12710001	w[1118]
880	chr2R	12789229	12789260	chr2R	12797658	12797689	roo	8	8429	10.0	5.5	7.8	0.9	8460	chr2R	12789229	intron,3` UTR	sca +,CR45137 -	chr2R	12793459	intron,intron	sca +,CR45137 -	chr2R	12797689	intron,3` UTR	sca +,CR45137 -	chr2R_8_12790001	chr2R_12790001	w[1118]
881	chr2R	12819386	12819425	chr2R	12824530	12824569	jockey	13	5144	11.0	7.5	9.2	1.3	5183	chr2R	12819386	intergenic	not near genes	chr2R	12821978	intergenic	not near genes	chr2R	12824569	intergenic	not near genes	chr2R_13_12820001	chr2R_12820001	w[1118]
883	chr2R	13136778	13136813	chr2R	13141651	13141686	Doc	9	4873	18.5	10.0	14.2	0.6	4908	chr2R	13136778	exon	Cap-G +	chr2R	13139232	intron	Cap-G +	chr2R	13141686	intron	Cap-G +	chr2R_9_13135001	chr2R_13135001	w[1118]
897	chr2R	13580444	13580476	chr2R	13580869	13580901	jockey	8	425	11.5	7.5	9.5	0.8	457	chr2R	13580444	3` UTR	CG6191 -	chr2R	13580672	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580901	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_8_13580001	chr2R_13580001	w[1118]
902	chr2R	13728072	13728110	chr2R	13735804	13735842	opus	10	7732	13.5	7.5	10.5	0.9	7770	chr2R	13728072	intron	fas +	chr2R	13731957	intron	fas +	chr2R	13735842	intron	fas +	chr2R_10_13730001	chr2R_13730001	w[1118]
904	chr2R	13839510	13839542	chr2R	13839685	13839717	INE-1	14	175	9.0	4.0	6.5	1.9	207	chr2R	13839510	intergenic	CG6347 +	chr2R	13839614	intergenic	CG6347 +,CG6357 +	chr2R	13839717	intergenic	CG6357 +,CG6347 +	chr2R_14_13835001	chr2R_13835001	w[1118]
906	chr2R	13905543	13905576	chr2R	13907600	13907633	Rt1a	9	2057	15.5	7.5	11.5	0.7	2090	chr2R	13905543	intron	shot -	chr2R	13906588	intron	shot -	chr2R	13907633	intron	shot -	chr2R_9_13905001	chr2R_13905001	w[1118]
924	chr2R	14394190	14394198	chr2R	14399096	14399104	Doc	4	4906	15.0	15.0	15.0	0.2	4914	chr2R	14394190	intergenic	not near genes	chr2R	14396647	intergenic	not near genes	chr2R	14399104	intergenic	not near genes	chr2R_4_14395001	chr2R_14395001	w[1118]
927	chr2R	14467231	14467322	chr2R	14476464	14476555	roo	17	9233	4.0	6.0	5.0	2.8	9324	chr2R	14467231	intergenic	not near genes	chr2R	14471893	intergenic	not near genes	chr2R	14476555	5` UTR	CR44462 +	chr2R_17_14470001	chr2R_14470001	w[1118]
928	chr2R	14497338	14497421	chr2R	14498590	14498673	1360	23	1252	5.5	7.5	6.5	3.1	1335	chr2R	14497338	intergenic	Cpsf160 -,L +	chr2R	14498006	intron	Cpsf160 -	chr2R	14498673	3` UTR	Cpsf160 -	chr2R_23_14495001	chr2R_14495001	w[1118]
936	chr2R	14696529	14696544	chr2R	14696687	14696702	INE-1	9	158	22.5	8.5	15.5	0.5	173	chr2R	14696529	intron	mspo -	chr2R	14696616	intron	mspo -	chr2R	14696702	intron	mspo -	chr2R_9_14695001	chr2R_14695001	w[1118]
947	chr2R	14889154	14889241	chr2R	14897837	14897916	Max-element	10	8678	9.0	0.5	4.8	1.7	8762	chr2R	14889154	intergenic	Cyp6a8 -	chr2R	14893535	intergenic	not near genes	chr2R	14897916	intergenic	not near genes	chr2R_10_14890001	chr2R_14890001	w[1118]
954	chr2R	15015394	15015429	chr2R	15022893	15022928	mdg1	12	7499	11.0	5.5	8.2	1.3	7534	chr2R	15015394	intron	hbs +	chr2R	15019161	intron	hbs +	chr2R	15022928	intron	hbs +	chr2R_12_15015001	chr2R_15015001	w[1118]
958	chr2R	15084917	15084943	chr2R	15092041	15092067	297	9	7124	18.0	10.0	14.0	0.6	7150	chr2R	15084917	intergenic	not near genes	chr2R	15088492	intergenic	not near genes	chr2R	15092067	5` UTR	CR44457 +	chr2R_9_15085001	chr2R_15085001	w[1118]
959	chr2R	15119260	15119295	chr2R	15127816	15127851	Tirant	14	8556	15.5	11.0	13.2	1.0	8591	chr2R	15119260	intron	chn +	chr2R	15123556	intron	chn +	chr2R	15127851	intron	chn +	chr2R_14_15120001	chr2R_15120001	w[1118]
966	chr2R	15340627	15340665	chr2R	15349285	15349323	Tirant	10	8658	17.5	7.5	12.5	0.7	8696	chr2R	15340627	intron	unc-5 +	chr2R	15344975	intron	unc-5 +	chr2R	15349323	intron	unc-5 +	chr2R_10_15340001	chr2R_15340001	w[1118]
1004	chr2R	17147186	17147215	chr2R	17152292	17152321	jockey	10	5106	14.0	11.5	12.8	0.7	5135	chr2R	17147186	intergenic	not near genes	chr2R	17149754	intergenic	not near genes	chr2R	17152321	intergenic	not near genes	chr2R_10_17145001	chr2R_17145001	w[1118]
1005	chr2R	17485883	17485944	chr2R	17490726	17490787	F-element	11	4843	13.0	11.5	12.2	0.8	4904	chr2R	17485883	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488335	intron	NT5E-2 +	chr2R	17490787	intron	NT5E-2 +	chr2R_11_17485001	chr2R_17485001	w[1118]
1012	chr2R	17782299	17782336	chr2R	17783577	17783614	pogo	17	1278	12.0	10.5	11.2	1.4	1315	chr2R	17782299	intergenic	CG33981 -,fab1 -	chr2R	17782956	intergenic	not near genes	chr2R	17783614	intergenic	mir-31a -	chr2R_17_17780001	chr2R_17780001	w[1118]
1013	chr2R	17783967	17784000	chr2R	17784283	17784316	pogo	13	316	15.5	16.5	16.0	0.8	349	chr2R	17783967	intergenic	mir-31a -	chr2R	17784142	intergenic	mir-31a -	chr2R	17784316	intergenic	mir-31a -	chr2R_13_17780001	chr2R_17780001	w[1118]
1019	chr2R	18045607	18045648	chr2R	18046034	18046075	jockey	16	427	18.5	9.5	14.0	1.1	468	chr2R	18045607	intergenic	not near genes	chr2R	18045841	intergenic	not near genes	chr2R	18046075	intergenic	CG5767 -	chr2R_16_18045001	chr2R_18045001	w[1118]
1022	chr2R	18111630	18111660	chr2R	18115573	18115603	F-element	12	3943	21.5	12.0	16.8	0.7	3973	chr2R	18111630	intergenic	not near genes	chr2R	18113616	intergenic	not near genes	chr2R	18115603	intergenic	not near genes	chr2R_12_18110001	chr2R_18110001	w[1118]
1023	chr2R	18487757	18487797	chr2R	18495302	18495342	blood	15	7545	14.0	10.5	12.2	1.1	7585	chr2R	18487757	intron	CG30116 -	chr2R	18491550	intron	CG30116 -	chr2R	18495342	intron	CG30116 -	chr2R_15_18490001	chr2R_18490001	w[1118]
1024	chr2R	18575731	18575768	chr2R	18581994	18582031	3S18	13	6263	21.0	8.5	14.8	0.8	6300	chr2R	18575731	intron	GEFmeso -	chr2R	18578881	intron	GEFmeso -	chr2R	18582031	intron	GEFmeso -	chr2R_13_18575001	chr2R_18575001	w[1118]
1025	chr2R	18590799	18590845	chr2R	18600028	18600072	roo	17	9227	13.5	7.0	10.2	1.5	9273	chr2R	18590799	intron	GEFmeso -	chr2R	18595436	intron	GEFmeso -	chr2R	18600072	intron	GEFmeso -	chr2R_17_18595001	chr2R_18595001	w[1118]
1046	chr2R	19715798	19715832	chr2R	19723342	19723376	blood	19	7544	19.0	4.0	11.5	1.5	7578	chr2R	19715798	intergenic	not near genes	chr2R	19719587	intergenic	not near genes	chr2R	19723376	intergenic	not near genes	chr2R_19_19715001	chr2R_19715001	w[1118]
1047	chr2R	19776535	19776567	chr2R	19779932	19779965	jockey	6	3398	17.0	8.5	12.8	0.4	3430	chr2R	19776535	intergenic	not near genes	chr2R	19778250	intergenic	not near genes	chr2R	19779965	intergenic	not near genes	chr2R_6_19775001	chr2R_19775001	w[1118]
1050	chr2R	19914783	19914829	chr2R	19922270	19922316	mdg1	5	7487	13.5	5.5	9.5	0.5	7533	chr2R	19914783	intergenic	not near genes	chr2R	19918550	intergenic	not near genes	chr2R	19922316	intergenic	not near genes	chr2R_5_19915001	chr2R_19915001	w[1118]
1051	chr2R	19957366	19957406	chr2R	19962643	19962683	copia	22	5277	15.0	8.0	11.5	1.8	5317	chr2R	19957366	intergenic	CG44623 +	chr2R	19960024	intergenic	not near genes	chr2R	19962683	intergenic	not near genes	chr2R_22_19960001	chr2R_19960001	w[1118]
1054	chr2R	20069187	20069220	chr2R	20071892	20071925	opus	7	2705	16.0	11.5	13.8	0.5	2738	chr2R	20069187	intergenic	not near genes	chr2R	20070556	intergenic	not near genes	chr2R	20071925	intergenic	not near genes	chr2R_7_20070001	chr2R_20070001	w[1118]
1061	chr2R	20368459	20368483	chr2R	20377697	20377721	roo	7	9238	15.0	12.0	13.5	0.5	9262	chr2R	20368459	intergenic	not near genes	chr2R	20373090	intergenic	not near genes	chr2R	20377721	intergenic	not near genes	chr2R_7_20370001	chr2R_20370001	w[1118]
1077	chr2R	20739383	20739416	chr2R	20744226	20744259	F-element	14	4843	15.5	12.0	13.8	0.9	4876	chr2R	20739383	intron	dpr +	chr2R	20741821	intron	dpr +	chr2R	20744259	intron	dpr +	chr2R_14_20740001	chr2R_20740001	w[1118]
1078	chr2R	20783239	20783330	chr2R	20788086	20788177	F-element	15	4847	6.5	9.0	7.8	1.7	4938	chr2R	20783239	intergenic	not near genes	chr2R	20785708	intergenic	not near genes	chr2R	20788177	intergenic	CG43666 -	chr2R_15_20785001	chr2R_20785001	w[1118]
1087	chr2R	21151078	21151143	chr2R	21153765	21153851	opus	5	2691	0.0	8.5	4.2	1.0	2773	chr2R	21151078	exon	CG30389 -	chr2R	21152464	intron	CG30389 -	chr2R	21153851	intron	CG30389 -	chr2R_5_21150001	chr2R_21150001	w[1118]
1106	chr2R	21738213	21738248	chr2R	21747448	21747483	roo	11	9235	14.5	6.0	10.2	1.0	9270	chr2R	21738213	intergenic	not near genes	chr2R	21742848	intergenic	not near genes	chr2R	21747483	intergenic	not near genes	chr2R_11_21740001	chr2R_21740001	w[1118]
1107	chr2R	21753021	21753117	chr2R	21753581	21753689	roo	9	563	7.0	3.5	5.2	1.5	668	chr2R	21753021	intergenic	not near genes	chr2R	21753355	intergenic	not near genes	chr2R	21753689	intergenic	not near genes	chr2R_9_21750001	chr2R_21750001	w[1118]
1110	chr2R	21809463	21809497	chr2R	21817778	21817812	roo	12	8315	16.5	10.0	13.2	0.8	8349	chr2R	21809463	intergenic	not near genes	chr2R	21813638	intergenic	not near genes	chr2R	21817812	intergenic	not near genes	chr2R_12_21810001	chr2R_21810001	w[1118]
1136	chr2R	22349629	22349664	chr2R	22351488	22351523	jockey	6	1859	18.0	10.0	14.0	0.4	1894	chr2R	22349629	intron	Liprin-gamma -	chr2R	22350576	intron	Liprin-gamma -	chr2R	22351523	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	w[1118]
1143	chr2R	22525686	22525718	chr2R	22529316	22529348	jockey	12	3630	16.0	13.0	14.5	0.8	3662	chr2R	22525686	intron	px -	chr2R	22527517	intron	px -	chr2R	22529348	intron	px -	chr2R_12_22525001	chr2R_22525001	w[1118]
1147	chr2R	22580438	22580444	chr2R	22586663	22586669	diver	6	6225	0.0	16.5	8.2	0.7	6231	chr2R	22580438	intron	dnr1 -	chr2R	22583554	intron	dnr1 -	chr2R	22586669	intron	dnr1 -	chr2R_6_22580001	chr2R_22580001	w[1118]
1151	chr2R	22774900	22774943	chr2R	22775394	22775437	jockey	19	494	22.0	12.0	17.0	1.1	537	chr2R	22774900	intron	CG42260 -	chr2R	22775168	intron	CG42260 -	chr2R	22775437	intron	CG42260 -	chr2R_19_22775001	chr2R_22775001	w[1118]
1154	chr2R	22842972	22843004	chr2R	22845009	22845041	flea	12	2037	15.5	11.5	13.5	0.8	2069	chr2R	22842972	3` UTR	CG9826 +	chr2R	22844006	intergenic	not near genes	chr2R	22845041	intergenic	not near genes	chr2R_12_22840001	chr2R_22840001	w[1118]
1157	chr2R	22958730	22958753	chr2R	22963893	22963916	flea	4	5163	17.0	10.5	13.8	0.3	5186	chr2R	22958730	intergenic	not near genes	chr2R	22961323	intergenic	not near genes	chr2R	22963916	intergenic	not near genes	chr2R_4_22960001	chr2R_22960001	w[1118]
1169	chr2R	23402543	23402587	chr2R	23407694	23407738	flea	16	5151	13.5	6.5	10.0	1.5	5195	chr2R	23402543	intergenic	CG3520 -	chr2R	23405140	intergenic	not near genes	chr2R	23407738	intergenic	not near genes	chr2R_16_23405001	chr2R_23405001	w[1118]
1174	chr2R	23529516	23529552	chr2R	23537167	23537203	412	11	7651	14.0	9.5	11.8	0.9	7687	chr2R	23529516	exon	bw -	chr2R	23533360	intron	bw -	chr2R	23537203	exon	bw -	chr2R_11_23530001	chr2R_23530001	w[1118]
1182	chr2R	23914236	23914326	chr2R	23921935	23922025	412	20	7699	8.0	5.0	6.5	2.7	7789	chr2R	23914236	exon	kcc +	chr2R	23918130	intron	kcc +	chr2R	23922025	exon	kcc +	chr2R_20_23915001	chr2R_23915001	w[1118]
1184	chr2R	24147002	24147027	chr2R	24154655	24154680	412	11	7653	17.0	6.5	11.8	0.9	7678	chr2R	24147002	intron	Dat +	chr2R	24150841	intron	Dat +	chr2R	24154680	intron	Dat +	chr2R_11_24150001	chr2R_24150001	w[1118]
1185	chr2R	24177169	24177214	chr2R	24184729	24184774	412	11	7560	22.5	12.5	17.5	0.6	7605	chr2R	24177169	3` UTR	Nop60B +	chr2R	24180972	intron	Nop60B +	chr2R	24184774	3` UTR	Nop60B +	chr2R_11_24180001	chr2R_24180001	w[1118]
1193	chr2R	24647529	24647561	chr2R	24655161	24655193	412	19	7632	14.0	12.0	13.0	1.4	7664	chr2R	24647529	intergenic	not near genes	chr2R	24651361	intergenic	not near genes	chr2R	24655193	intergenic	not near genes	chr2R_19_24650001	chr2R_24650001	w[1118]
1195	chr2R	24727820	24727861	chr2R	24735403	24735444	mdg1	15	7583	16.5	9.5	13.0	1.1	7624	chr2R	24727820	intron	Mid1 -	chr2R	24731632	intron	Mid1 -	chr2R	24735444	intron	Mid1 -	chr2R_15_24730001	chr2R_24730001	w[1118]
1197	chr2R	24763554	24763583	chr2R	24765605	24765634	G2	12	2051	17.5	13.0	15.2	0.7	2080	chr2R	24763554	exon	CG3894 +	chr2R	24764594	intron	CG3894 +	chr2R	24765634	exon	CG3894 +	chr2R_12_24760001	chr2R_24760001	w[1118]
1208	chr2R	25141591	25141630	chr2R	25159356	25159395	roo	8	17765	16.0	8.5	12.2	0.6	17804	chr2R	25141591	intergenic	not near genes	chr2R	25150493	intergenic	not near genes	chr2R	25159395	intergenic	not near genes	chr2R_8_25150001	chr2R_25150001	w[1118]
1215	chr3L	110150	110188	chr3L	119392	119430	roo	12	9242	16.5	9.0	12.8	0.9	9280	chr3L	110150	intergenic	not near genes	chr3L	114790	intergenic	not near genes	chr3L	119430	intergenic	not near genes	chr3L_12_110001	chr3L_110001	w[1118]
1220	chr3L	402656	402663	chr3L	409784	409791	297	5	7128	13.0	14.0	13.5	0.3	7135	chr3L	402656	intergenic	not near genes	chr3L	406224	intergenic	not near genes	chr3L	409791	intergenic	not near genes	chr3L_5_405001	chr3L_405001	w[1118]
1228	chr3L	857939	857976	chr3L	866495	866532	Tirant	13	8556	14.0	9.5	11.8	1.0	8593	chr3L	857939	intergenic	not near genes	chr3L	862236	intergenic	not near genes	chr3L	866532	5` UTR	CG12502 +	chr3L_13_860001	chr3L_860001	w[1118]
1231	chr3L	925111	925151	chr3L	932612	932651	mdg1	16	7501	15.5	6.5	11.0	1.3	7540	chr3L	925111	intron	Glut1 +	chr3L	928881	intron	Glut1 +	chr3L	932651	intron	Glut1 +	chr3L_16_925001	chr3L_925001	w[1118]
1233	chr3L	939712	939743	chr3L	940908	940939	jockey	11	1196	21.0	3.0	12.0	0.8	1227	chr3L	939712	intron	Glut1 +	chr3L	940326	intron	Glut1 +	chr3L	940939	intron	Glut1 +	chr3L_11_940001	chr3L_940001	w[1118]
1240	chr3L	1047291	1047327	chr3L	1055178	1055214	412	9	7887	13.0	9.5	11.2	0.7	7923	chr3L	1047291	intron	bab1 -	chr3L	1051252	intron	bab1 -	chr3L	1055214	intron	bab1 -	chr3L_9_1050001	chr3L_1050001	w[1118]
1242	chr3L	1154058	1154098	chr3L	1163286	1163326	roo	16	9228	18.0	7.0	12.5	1.2	9268	chr3L	1154058	intron	bab2 -	chr3L	1158692	intron	bab2 -	chr3L	1163326	intron	bab2 -	chr3L_16_1155001	chr3L_1155001	w[1118]
1245	chr3L	1219529	1219568	chr3L	1227337	1227376	412	13	7808	13.0	8.5	10.8	1.1	7847	chr3L	1219529	intron	mwh +	chr3L	1223452	intron	mwh +	chr3L	1227376	intron	mwh +	chr3L_13_1220001	chr3L_1220001	w[1118]
1251	chr3L	1485664	1485691	chr3L	1486910	1486937	1360	5	1246	15.0	9.5	12.2	0.4	1273	chr3L	1485664	intron	stet -	chr3L	1486300	intron	stet -	chr3L	1486937	intron	stet -	chr3L_5_1485001	chr3L_1485001	w[1118]
1252	chr3L	1505941	1505971	chr3L	1513613	1513643	17.6	17	7672	20.0	11.0	15.5	1.0	7702	chr3L	1505941	intron,intron	Psa +,cue -	chr3L	1509792	intron,intron	Psa +,cue -	chr3L	1513643	intron,intron	Psa +,cue -	chr3L_17_1505001	chr3L_1505001	w[1118]
1256	chr3L	1740796	1740833	chr3L	1741112	1741149	pogo	15	316	18.5	11.5	15.0	0.9	353	chr3L	1740796	intron	Gk +	chr3L	1740972	intron	Gk +	chr3L	1741149	intron	Gk +	chr3L_15_1740001	chr3L_1740001	w[1118]
1267	chr3L	2108194	2108225	chr3L	2113473	2113504	copia	9	5279	18.5	10.0	14.2	0.6	5310	chr3L	2108194	intron	sls -	chr3L	2110849	intron	sls -	chr3L	2113504	intron	sls -	chr3L_9_2110001	chr3L_2110001	w[1118]
1277	chr3L	2447450	2447478	chr3L	2456681	2456709	roo	16	9231	15.5	11.5	13.5	1.1	9259	chr3L	2447450	intron	CG45186 +	chr3L	2452080	intron	CG45186 +	chr3L	2456709	intron	CG45186 +	chr3L_16_2450001	chr3L_2450001	w[1118]
1287	chr3L	2751392	2751454	chr3L	2755762	2755824	F-element	16	4370	15.0	14.5	14.8	1.0	4432	chr3L	2751392	intron	Mrtf -	chr3L	2753608	intron	Mrtf -	chr3L	2755824	intron	Mrtf -	chr3L_16_2750001	chr3L_2750001	w[1118]
1289	chr3L	2927778	2927814	chr3L	2936130	2936166	Tirant	17	8352	19.0	10.5	14.8	1.1	8388	chr3L	2927778	intron	Shab +	chr3L	2931972	intron	Shab +	chr3L	2936166	intron	Shab +	chr3L_17_2930001	chr3L_2930001	w[1118]
1290	chr3L	2966684	2966705	chr3L	2974187	2974207	mdg1	7	7503	16.0	0.0	8.0	0.8	7523	chr3L	2966684	intergenic	not near genes	chr3L	2970446	intergenic	not near genes	chr3L	2974207	intergenic	not near genes	chr3L_7_2970001	chr3L_2970001	w[1118]
1293	chr3L	3040269	3040301	chr3L	3042133	3042165	S-element	13	1864	17.0	10.5	13.8	0.9	1896	chr3L	3040269	3` UTR	CG2162 +	chr3L	3041217	intergenic	not near genes	chr3L	3042165	intergenic	Jafrac2 +	chr3L_13_3040001	chr3L_3040001	w[1118]
1295	chr3L	3051689	3051723	chr3L	3052006	3052043	pogo	9	320	14.0	10.0	12.0	0.7	354	chr3L	3051689	3` UTR	CG32485 +	chr3L	3051866	intergenic	CG32485 +	chr3L	3052043	intergenic	CG32485 +,CG1271 +	chr3L_9_3050001	chr3L_3050001	w[1118]
1296	chr3L	3061219	3061262	chr3L	3069877	3069920	Tirant	17	8658	10.0	10.0	10.0	1.5	8701	chr3L	3061219	intron	CG32486 -	chr3L	3065570	intron	CG32486 -	chr3L	3069920	intron	CG32486 -	chr3L_17_3065001	chr3L_3065001	w[1118]
1300	chr3L	3281377	3281417	chr3L	3281948	3281988	Doc	13	571	8.5	12.0	10.2	1.2	611	chr3L	3281377	intron	CG12017 +	chr3L	3281682	intron	CG12017 +	chr3L	3281988	intron	CG12017 +	chr3L_13_3280001	chr3L_3280001	w[1118]
1303	chr3L	3475015	3475044	chr3L	3475534	3475563	jockey	10	519	19.5	11.0	15.2	0.6	548	chr3L	3475015	intron	CG42324 +	chr3L	3475289	intron	CG42324 +	chr3L	3475563	intron	CG42324 +	chr3L_10_3475001	chr3L_3475001	w[1118]
1308	chr3L	3601236	3601279	chr3L	3606622	3606665	copia	18	5386	19.0	7.5	13.2	1.3	5429	chr3L	3601236	intron	Eip63E +	chr3L	3603950	intron	Eip63E +	chr3L	3606665	intron	Eip63E +	chr3L_18_3600001	chr3L_3600001	w[1118]
1319	chr3L	3833673	3833765	chr3L	3833989	3834081	pogo	8	316	4.0	5.0	4.5	1.5	408	chr3L	3833673	intron	enc +	chr3L	3833877	intron	enc +	chr3L	3834081	intron	enc +	chr3L_8_3830001	chr3L_3830001	w[1118]
1330	chr3L	4328672	4328709	chr3L	4336245	4336281	412	11	7573	0.0	6.5	3.2	2.6	7609	chr3L	4328672	intron	Cip4 -	chr3L	4332476	intron	Cip4 -	chr3L	4336281	exon	Cip4 -	chr3L_11_4330001	chr3L_4330001	w[1118]
1341	chr3L	4773608	4773628	chr3L	4774404	4774424	Rt1a	4	796	12.5	13.0	12.8	0.3	816	chr3L	4773608	intron	RhoGEF64C +	chr3L	4774016	intron	RhoGEF64C +	chr3L	4774424	intron	RhoGEF64C +	chr3L_4_4770001	chr3L_4770001	w[1118]
1346	chr3L	4901060	4901100	chr3L	4907325	4907365	diver	8	6265	1.5	5.0	3.2	1.9	6305	chr3L	4901060	intergenic	CG13704 +	chr3L	4904212	intergenic	not near genes	chr3L	4907365	intergenic	not near genes	chr3L_8_4900001	chr3L_4900001	w[1118]
1349	chr3L	5034094	5034131	chr3L	5043321	5043358	roo	16	9227	11.5	9.0	10.2	1.4	9264	chr3L	5034094	intron	Con -	chr3L	5038726	intron	Con -	chr3L	5043358	intron	Con -	chr3L_16_5035001	chr3L_5035001	w[1118]
1350	chr3L	5045393	5045431	chr3L	5050249	5050287	Doc	9	4856	20.0	9.5	14.8	0.6	4894	chr3L	5045393	5` UTR	Con -	chr3L	5047840	intron	Con -	chr3L	5050287	intron	Con -	chr3L_9_5045001	chr3L_5045001	w[1118]
1367	chr3L	5537664	5537697	chr3L	5538081	5538114	jockey	12	417	13.5	7.0	10.2	1.1	450	chr3L	5537664	intergenic	not near genes	chr3L	5537889	intergenic	not near genes	chr3L	5538114	intergenic	CG10625 -	chr3L_12_5535001	chr3L_5535001	w[1118]
1374	chr3L	5909964	5910064	chr3L	5910280	5910380	pogo	26	316	14.5	0.0	7.2	3.2	416	chr3L	5909964	intron	CG13288 +	chr3L	5910172	intron	CG13288 +	chr3L	5910380	intron	CG13288 +	chr3L_26_5910001	chr3L_5910001	w[1118]
1381	chr3L	6001620	6001663	chr3L	6004395	6004438	jockey	18	2775	4.5	7.0	5.8	2.6	2818	chr3L	6001620	intron	PVRAP +	chr3L	6003029	intron	PVRAP +	chr3L	6004438	intron	PVRAP +	chr3L_18_6000001	chr3L_6000001	w[1118]
1383	chr3L	6040292	6040389	chr3L	6042723	6042821	Doc	15	2431	7.0	7.0	7.0	1.9	2529	chr3L	6040292	intergenic	Jon65Aiv +	chr3L	6041556	intergenic	not near genes	chr3L	6042821	intergenic	not near genes	chr3L_15_6040001	chr3L_6040001	w[1118]
1393	chr3L	6220856	6220892	chr3L	6230083	6230119	roo	12	9227	14.5	7.0	10.8	1.0	9263	chr3L	6220856	5` UTR	pncr008:3L +	chr3L	6225488	intergenic	not near genes	chr3L	6230119	intergenic	not near genes	chr3L_12_6225001	chr3L_6225001	w[1118]
1398	chr3L	6334953	6334981	chr3L	6335499	6335527	297	9	546	13.0	8.0	10.5	0.8	574	chr3L	6334953	intron	CG13300 -	chr3L	6335240	intron	CG13300 -	chr3L	6335527	intron	CG13300 -	chr3L_9_6335001	chr3L_6335001	w[1118]
1402	chr3L	6405601	6405631	chr3L	6432140	6432170	roo	10	26539	13.0	10.0	11.5	0.8	26569	chr3L	6405601	intron	CG42747 +	chr3L	6418886	intron	CG42747 +	chr3L	6432170	intron	CG42747 +	chr3L_10_6415001	chr3L_6415001	w[1118]
1405	chr3L	6620540	6620555	chr3L	6621055	6621070	Rt1c	5	515	15.0	13.5	14.2	0.3	530	chr3L	6620540	intergenic	not near genes	chr3L	6620805	intergenic	not near genes	chr3L	6621070	intergenic	not near genes	chr3L_5_6620001	chr3L_6620001	w[1118]
1410	chr3L	6781052	6781149	chr3L	6783141	6783234	Doc	11	2085	7.0	5.0	6.0	1.6	2182	chr3L	6781052	intergenic	not near genes	chr3L	6782143	intergenic	not near genes	chr3L	6783234	intergenic	not near genes	chr3L_11_6780001	chr3L_6780001	w[1118]
1413	chr3L	6855877	6855909	chr3L	6860736	6860767	Doc	14	4859	8.0	13.5	10.8	1.2	4890	chr3L	6855877	intergenic	not near genes	chr3L	6858322	intergenic	not near genes	chr3L	6860767	intergenic	not near genes	chr3L_14_6855001	chr3L_6855001	w[1118]
1415	chr3L	6887454	6887494	chr3L	6895021	6895061	roo	14	7567	11.5	11.0	11.2	1.1	7607	chr3L	6887454	intergenic	not near genes	chr3L	6891258	intergenic	not near genes	chr3L	6895061	intergenic	not near genes	chr3L_14_6890001	chr3L_6890001	w[1118]
1418	chr3L	6994820	6994909	chr3L	6995496	6995594	BS	6	677	0.5	3.5	2.0	2.0	774	chr3L	6994820	intergenic	bin +	chr3L	6995207	intergenic	not near genes	chr3L	6995594	intergenic	not near genes	chr3L_6_6995001	chr3L_6995001	w[1118]
1433	chr3L	7377257	7377293	chr3L	7380437	7380473	297	14	3180	19.5	8.0	13.8	0.9	3216	chr3L	7377257	intron	SMSr -	chr3L	7378865	intron	SMSr -	chr3L	7380473	intron	SMSr -	chr3L_14_7375001	chr3L_7375001	w[1118]
1435	chr3L	7498696	7498727	chr3L	7503548	7503579	F-element	10	4852	19.0	12.0	15.5	0.6	4883	chr3L	7498696	5` UTR	CG8539 -	chr3L	7501138	intergenic	not near genes	chr3L	7503579	intergenic	not near genes	chr3L_10_7500001	chr3L_7500001	w[1118]
1444	chr3L	7793646	7793687	chr3L	7800773	7800814	297	18	7127	18.0	13.0	15.5	1.1	7168	chr3L	7793646	intron	CG32369 -	chr3L	7797230	intron	CG32369 -	chr3L	7800814	intron	CG32369 -	chr3L_18_7795001	chr3L_7795001	w[1118]
1449	chr3L	7886449	7886495	chr3L	7889042	7889087	Stalker4	10	2593	14.0	7.0	10.5	0.9	2638	chr3L	7886449	intron	CG32365 +	chr3L	7887768	intron	CG32365 +	chr3L	7889087	intron	CG32365 +	chr3L_10_7885001	chr3L_7885001	w[1118]
1450	chr3L	7916768	7916807	chr3L	7926014	7926052	roo	14	9246	18.0	6.0	12.0	1.1	9284	chr3L	7916768	3` UTR	syd -	chr3L	7921410	intron	syd -	chr3L	7926052	3` UTR	syd -	chr3L_14_7920001	chr3L_7920001	w[1118]
1454	chr3L	7985310	7985339	chr3L	7987713	7987742	NOF	12	2403	16.5	13.0	14.8	0.8	2432	chr3L	7985310	intron	nmo +	chr3L	7986526	intron	nmo +	chr3L	7987742	intron	nmo +	chr3L_12_7985001	chr3L_7985001	w[1118]
1455	chr3L	8019637	8019676	chr3L	8024125	8024164	NOF	6	4488	17.5	7.0	12.2	0.5	4527	chr3L	8019637	intron	nmo +	chr3L	8021900	intron	nmo +	chr3L	8024164	intron	nmo +	chr3L_6_8020001	chr3L_8020001	w[1118]
1461	chr3L	8233521	8233536	chr3L	8238858	8238873	Rt1a	5	5337	14.0	12.0	13.0	0.4	5352	chr3L	8233521	intron	CG7213 -	chr3L	8236197	intron	CG7213 -	chr3L	8238873	intron,intron	CG7213 -,Dscam4 +	chr3L_5_8235001	chr3L_8235001	w[1118]
1468	chr3L	8481707	8481744	chr3L	8490941	8490978	roo	19	9234	10.5	8.0	9.2	1.9	9271	chr3L	8481707	intron	CG43163 -	chr3L	8486342	intron	CG43163 -	chr3L	8490978	intron	CG43163 -	chr3L_19_8485001	chr3L_8485001	w[1118]
1469	chr3L	8498236	8498275	chr3L	8505778	8505817	blood	10	7542	16.5	8.0	12.2	0.8	7581	chr3L	8498236	intron	CG43163 -	chr3L	8502026	intron	CG43163 -	chr3L	8505817	intron	CG43163 -	chr3L_10_8500001	chr3L_8500001	w[1118]
1472	chr3L	8791214	8791306	chr3L	8796709	8796800	I-element	8	5494	11.0	2.0	6.5	1.1	5586	chr3L	8791214	exon	Fhos +	chr3L	8794007	intron	Fhos +	chr3L	8796800	intron	Fhos +	chr3L_8_8790001	chr3L_8790001	w[1118]
1484	chr3L	9076865	9076899	chr3L	9084500	9084534	412	14	7635	18.0	12.5	15.2	0.9	7669	chr3L	9076865	exon	Tequila +	chr3L	9080700	intron	Tequila +	chr3L	9084534	exon	Tequila +	chr3L_14_9080001	chr3L_9080001	w[1118]
1486	chr3L	9130494	9130531	chr3L	9134330	9134367	412	13	3836	16.0	5.0	10.5	1.1	3873	chr3L	9130494	intergenic	bol -	chr3L	9132430	intergenic	not near genes	chr3L	9134367	intergenic	Dhpr +	chr3L_13_9130001	chr3L_9130001	w[1118]
1487	chr3L	9164636	9164647	chr3L	9166178	9166189	hobo	5	1542	19.0	0.0	9.5	0.5	1553	chr3L	9164636	intron	Rdl -	chr3L	9165412	intron	Rdl -	chr3L	9166189	intron	Rdl -	chr3L_5_9165001	chr3L_9165001	w[1118]
1489	chr3L	9219191	9219225	chr3L	9219938	9219972	jockey	12	747	15.0	9.0	12.0	0.9	781	chr3L	9219191	intergenic	not near genes	chr3L	9219582	intergenic	not near genes	chr3L	9219972	intergenic	not near genes	chr3L_12_9215001	chr3L_9215001	w[1118]
1491	chr3L	9270543	9270579	chr3L	9278373	9278409	roo	4	7830	16.5	3.5	10.0	0.4	7866	chr3L	9270543	intron	GluRIB +	chr3L	9274476	intron	GluRIB +	chr3L	9278409	exon	GluRIB +	chr3L_4_9270001	chr3L_9270001	w[1118]
1496	chr3L	9443499	9443539	chr3L	9445350	9445390	S-element	6	1851	6.0	6.0	6.0	0.9	1891	chr3L	9443499	intron	CG33926 +	chr3L	9444444	intron	CG33926 +	chr3L	9445390	intron	CG33926 +	chr3L_6_9440001	chr3L_9440001	w[1118]
1498	chr3L	9501639	9501676	chr3L	9502200	9502237	roo	16	561	16.5	11.5	14.0	1.1	598	chr3L	9501639	intron	path -	chr3L	9501938	intron	path -	chr3L	9502237	intron	path -	chr3L_16_9500001	chr3L_9500001	w[1118]
1501	chr3L	9526456	9526519	chr3L	9528194	9528259	Doc	10	1740	0.0	8.0	4.0	2.0	1803	chr3L	9526456	intergenic	not near genes	chr3L	9527358	intergenic	not near genes	chr3L	9528259	intergenic	not near genes	chr3L_10_9525001	chr3L_9525001	w[1118]
1502	chr3L	9533694	9533726	chr3L	9541329	9541361	412	8	7635	13.5	8.5	11.0	0.7	7667	chr3L	9533694	intergenic	not near genes	chr3L	9537528	intergenic	not near genes	chr3L	9541361	intergenic	not near genes	chr3L_8_9535001	chr3L_9535001	w[1118]
1503	chr3L	9575849	9575891	chr3L	9581002	9581045	jockey	11	5154	6.0	13.5	9.8	1.0	5196	chr3L	9575849	intron	CG42673 +	chr3L	9578447	intron	CG42673 +	chr3L	9581045	intron	CG42673 +	chr3L_11_9575001	chr3L_9575001	w[1118]
1512	chr3L	9929602	9929646	chr3L	9938457	9938502	roo	18	8855	17.5	5.5	11.5	1.4	8900	chr3L	9929602	intron	CG34356 +	chr3L	9934052	intron	CG34356 +	chr3L	9938502	intron	CG34356 +	chr3L_18_9930001	chr3L_9930001	w[1118]
1528	chr3L	10414885	10414921	chr3L	10417332	10417368	Doc	21	2447	14.5	8.0	11.2	1.7	2483	chr3L	10414885	intergenic	CG12362 +	chr3L	10416126	intergenic	not near genes	chr3L	10417368	intergenic	not near genes	chr3L_21_10415001	chr3L_10415001	w[1118]
1546	chr3L	11086988	11087029	chr3L	11088851	11088892	S-element	12	1863	17.5	5.0	11.2	1.0	1904	chr3L	11086988	intron	JIL-1 -	chr3L	11087940	intron	JIL-1 -	chr3L	11088892	intron	JIL-1 -	chr3L_12_11085001	chr3L_11085001	w[1118]
1553	chr3L	11264408	11264438	chr3L	11271435	11271465	17.6	12	7027	18.0	8.0	13.0	0.9	7057	chr3L	11264408	intergenic	not near genes	chr3L	11267936	intergenic	not near genes	chr3L	11271465	intergenic	not near genes	chr3L_12_11265001	chr3L_11265001	w[1118]
1557	chr3L	11329634	11329669	chr3L	11332914	11332949	jockey	16	3280	3.5	11.5	7.5	1.9	3315	chr3L	11329634	intergenic	not near genes	chr3L	11331292	intergenic	not near genes	chr3L	11332949	intergenic	not near genes	chr3L_16_11330001	chr3L_11330001	w[1118]
1570	chr3L	11723033	11723057	chr3L	11727903	11727927	Doc	8	4870	21.5	11.5	16.5	0.5	4894	chr3L	11723033	3` UTR	Bmcp +	chr3L	11725480	intron	Bmcp +	chr3L	11727927	3` UTR	Bmcp +	chr3L_8_11725001	chr3L_11725001	w[1118]
1577	chr3L	11864490	11864528	chr3L	11865860	11865898	pogo	10	1370	17.0	9.0	13.0	0.7	1408	chr3L	11864490	intron	CG44837 -	chr3L	11865194	intron	CG44837 -	chr3L	11865898	intron	CG44837 -	chr3L_10_11865001	chr3L_11865001	w[1118]
1612	chr3L	12874853	12874900	chr3L	12877220	12877267	jockey	26	2367	15.0	14.0	14.5	1.7	2414	chr3L	12874853	intergenic	not near genes	chr3L	12876060	intergenic	not near genes	chr3L	12877267	intergenic	not near genes	chr3L_26_12875001	chr3L_12875001	w[1118]
1614	chr3L	12919214	12919227	chr3L	12924762	12924775	Rt1c	5	5548	25.0	8.0	16.5	0.3	5561	chr3L	12919214	intergenic	not near genes	chr3L	12921994	intergenic	not near genes	chr3L	12924775	intergenic	not near genes	chr3L_5_12920001	chr3L_12920001	w[1118]
1617	chr3L	12957726	12957761	chr3L	12962283	12962318	copia	9	4557	13.5	8.5	11.0	0.8	4592	chr3L	12957726	intergenic	not near genes	chr3L	12960022	intergenic	not near genes	chr3L	12962318	intergenic	not near genes	chr3L_9_12960001	chr3L_12960001	w[1118]
1628	chr3L	13525100	13525118	chr3L	13532970	13532989	roo	5	7871	21.0	15.0	18.0	0.3	7889	chr3L	13525100	intergenic	not near genes	chr3L	13529044	intergenic	not near genes	chr3L	13532989	intergenic	not near genes	chr3L_5_13525001	chr3L_13525001	w[1118]
1629	chr3L	13574563	13574583	chr3L	13580148	13580168	Rt1c	12	5585	15.0	11.0	13.0	0.9	5605	chr3L	13574563	intron	bru-3 -	chr3L	13577366	intron	bru-3 -	chr3L	13580168	intron	bru-3 -	chr3L_12_13575001	chr3L_13575001	w[1118]
1638	chr3L	13804482	13804516	chr3L	13822843	13822877	roo	11	18361	17.5	11.0	14.2	0.7	18395	chr3L	13804482	intergenic	not near genes	chr3L	13813680	intergenic	not near genes	chr3L	13822877	intergenic	not near genes	chr3L_11_13810001	chr3L_13810001	w[1118]
1650	chr3L	14245520	14245575	chr3L	14245689	14245744	1360	16	169	13.0	11.5	12.2	1.2	224	chr3L	14245520	3` UTR	CR44561 -	chr3L	14245632	3` UTR	CR44561 -	chr3L	14245744	intergenic	CR44561 -,CR44560 +	chr3L_16_14245001	chr3L_14245001	w[1118]
1651	chr3L	14267310	14267346	chr3L	14271825	14271861	F-element	12	4515	15.0	12.5	13.8	0.8	4551	chr3L	14267310	intergenic	not near genes	chr3L	14269586	intergenic	not near genes	chr3L	14271861	intergenic	not near genes	chr3L_12_14265001	chr3L_14265001	w[1118]
1652	chr3L	14295915	14295954	chr3L	14296476	14296515	roo	11	561	9.0	12.5	10.8	0.9	600	chr3L	14295915	intron	fz +	chr3L	14296215	intron	fz +	chr3L	14296515	intron	fz +	chr3L_11_14295001	chr3L_14295001	w[1118]
1653	chr3L	14311962	14312002	chr3L	14316851	14316891	X-element	13	4889	7.5	11.0	9.2	1.3	4929	chr3L	14311962	exon	fz +	chr3L	14314426	intron	fz +	chr3L	14316891	intron	fz +	chr3L_13_14310001	chr3L_14310001	w[1118]
1664	chr3L	14468391	14468409	chr3L	14473675	14473693	copia	5	5284	6.0	9.5	7.8	0.6	5302	chr3L	14468391	intron	bbg -	chr3L	14471042	intron	bbg -	chr3L	14473693	intron	bbg -	chr3L_5_14470001	chr3L_14470001	w[1118]
1666	chr3L	14524303	14524340	chr3L	14529135	14529172	F-element	4	4832	5.0	9.0	7.0	0.5	4869	chr3L	14524303	intron	bbg -	chr3L	14526738	intron	bbg -	chr3L	14529172	intron	bbg -	chr3L_4_14525001	chr3L_14525001	w[1118]
1673	chr3L	14721129	14721162	chr3L	14723047	14723080	Rt1c	12	1918	16.0	13.5	14.8	0.8	1951	chr3L	14721129	intron	ome +	chr3L	14722104	intron	ome +	chr3L	14723080	intron	ome +	chr3L_12_14720001	chr3L_14720001	w[1118]
1674	chr3L	14725545	14725568	chr3L	14728614	14728637	Doc	4	3069	15.5	12.0	13.8	0.3	3092	chr3L	14725545	intron	ome +	chr3L	14727091	intron	ome +	chr3L	14728637	intron	ome +	chr3L_4_14725001	chr3L_14725001	w[1118]
1676	chr3L	14825086	14825155	chr3L	14832888	14832957	Stalker2	9	7802	5.5	11.5	8.5	0.9	7871	chr3L	14825086	intron	CG17839 +	chr3L	14829022	intron	CG17839 +	chr3L	14832957	intron	CG17839 +	chr3L_9_14825001	chr3L_14825001	w[1118]
1680	chr3L	14954303	14954343	chr3L	14956047	14956087	transib2	21	1744	17.0	6.0	11.5	1.7	1784	chr3L	14954303	intergenic	not near genes	chr3L	14955195	intergenic	not near genes	chr3L	14956087	intergenic	not near genes	chr3L_21_14955001	chr3L_14955001	w[1118]
1682	chr3L	14970698	14970740	chr3L	14971084	14971126	F-element	13	386	16.5	9.5	13.0	0.9	428	chr3L	14970698	intergenic	Tom +	chr3L	14970912	intergenic	not near genes	chr3L	14971126	intergenic	not near genes	chr3L_13_14970001	chr3L_14970001	w[1118]
1687	chr3L	15084986	15085078	chr3L	15086227	15086319	1360	14	1241	6.0	8.0	7.0	1.8	1333	chr3L	15084986	intron	cp309 -	chr3L	15085652	intron	cp309 -	chr3L	15086319	intron	cp309 -	chr3L_14_15085001	chr3L_15085001	w[1118]
1693	chr3L	15295711	15295745	chr3L	15298629	15298663	gypsy5	11	2918	13.5	6.5	10.0	1.0	2952	chr3L	15295711	intergenic	not near genes	chr3L	15297187	intergenic	not near genes	chr3L	15298663	intergenic	Best4 +	chr3L_11_15295001	chr3L_15295001	w[1118]
1699	chr3L	15423698	15423738	chr3L	15426617	15426657	opus	13	2919	17.5	0.0	8.8	1.3	2959	chr3L	15423698	intergenic	not near genes	chr3L	15425178	intergenic	not near genes	chr3L	15426657	intergenic	not near genes	chr3L_13_15425001	chr3L_15425001	w[1118]
1717	chr3L	15899180	15899201	chr3L	15899822	15899843	jockey	9	642	9.5	9.5	9.5	0.9	663	chr3L	15899180	intergenic	pHCl -	chr3L	15899512	intergenic	pHCl -	chr3L	15899843	intergenic	sff -	chr3L_9_15895001	chr3L_15895001	w[1118]
1719	chr3L	15929128	15929156	chr3L	15938346	15938374	roo	11	9218	13.0	9.5	11.2	0.9	9246	chr3L	15929128	intron	Pka-C3 -	chr3L	15933751	intron	Pka-C3 -	chr3L	15938374	intron	Pka-C3 -	chr3L_11_15930001	chr3L_15930001	w[1118]
1726	chr3L	16184056	16184085	chr3L	16188950	16188979	X-element	10	4894	17.5	10.0	13.8	0.7	4923	chr3L	16184056	intergenic	not near genes	chr3L	16186518	intergenic	not near genes	chr3L	16188979	intergenic	not near genes	chr3L_10_16185001	chr3L_16185001	w[1118]
1729	chr3L	16443780	16443826	chr3L	16446195	16446241	Doc	20	2415	22.5	7.5	15.0	1.2	2461	chr3L	16443780	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445010	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446241	intron,intron	CG33158 +,dsx-c73A -	chr3L_20_16445001	chr3L_16445001	w[1118]
1732	chr3L	16493922	16493952	chr3L	16494514	16494544	jockey	12	592	11.5	10.0	10.8	1.0	622	chr3L	16493922	intron,exon,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494233	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494544	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_12_16490001	chr3L_16490001	w[1118]
1739	chr3L	16616446	16616487	chr3L	16621849	16621890	297	20	5403	17.5	7.5	12.5	1.5	5444	chr3L	16616446	3` UTR	Abl -	chr3L	16619168	3` UTR	Abl -	chr3L	16621890	3` UTR	Abl -	chr3L_20_16615001	chr3L_16615001	w[1118]
1741	chr3L	16683964	16683993	chr3L	16689260	16689289	copia	7	5296	19.0	10.5	14.8	0.4	5325	chr3L	16683964	intron,intron	Lasp -,CG43954 -	chr3L	16686626	intron,intron	Lasp -,CG43954 -	chr3L	16689289	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_7_16685001	chr3L_16685001	w[1118]
1753	chr3L	16945674	16945704	chr3L	16954901	16954932	roo	12	9228	14.0	12.0	13.0	0.9	9258	chr3L	16945674	exon	Obp73a +	chr3L	16950303	intergenic	not near genes	chr3L	16954932	5` UTR	Nc73EF +	chr3L_12_16950001	chr3L_16950001	w[1118]
1756	chr3L	17034868	17034948	chr3L	17035126	17035211	G2	8	260	10.5	8.5	9.5	0.8	343	chr3L	17034868	intergenic	not near genes	chr3L	17035040	intergenic	not near genes	chr3L	17035211	intergenic	beg +	chr3L_8_17035001	chr3L_17035001	w[1118]
1757	chr3L	17084946	17084981	chr3L	17094170	17094205	roo	13	9224	13.0	9.0	11.0	1.1	9259	chr3L	17084946	intron	Rbp6 -	chr3L	17089576	intron	Rbp6 -	chr3L	17094205	intron	Rbp6 -	chr3L_13_17085001	chr3L_17085001	w[1118]
1764	chr3L	17516918	17516955	chr3L	17524551	17524588	412	19	7633	16.0	9.5	12.8	1.4	7670	chr3L	17516918	intron	CG7564 +	chr3L	17520753	intron	CG7564 +	chr3L	17524588	3` UTR	CG7564 +	chr3L_19_17520001	chr3L_17520001	w[1118]
1767	chr3L	17698207	17698234	chr3L	17698864	17698892	Juan	8	658	25.0	11.5	18.2	0.4	685	chr3L	17698207	intron	Ccn +	chr3L	17698550	intron	Ccn +	chr3L	17698892	intron	Ccn +	chr3L_8_17695001	chr3L_17695001	w[1118]
1769	chr3L	17730790	17730829	chr3L	17738195	17738234	mdg1	20	7405	14.5	12.5	13.5	1.4	7444	chr3L	17730790	intron	Ccn +	chr3L	17734512	intron	Ccn +	chr3L	17738234	intron	Ccn +	chr3L_20_17730001	chr3L_17730001	w[1118]
1772	chr3L	17799748	17799827	chr3L	17801610	17801689	S-element	13	1862	6.5	8.5	7.5	1.5	1941	chr3L	17799748	intron	NUCB1 -	chr3L	17800718	intron	NUCB1 -	chr3L	17801689	intron	NUCB1 -	chr3L_13_17800001	chr3L_17800001	w[1118]
1775	chr3L	17918314	17918347	chr3L	17921192	17921225	opus	10	2878	11.5	9.0	10.2	0.9	2911	chr3L	17918314	intergenic	not near genes	chr3L	17919770	intergenic	not near genes	chr3L	17921225	intergenic	not near genes	chr3L_10_17915001	chr3L_17915001	w[1118]
1782	chr3L	18047645	18047687	chr3L	18056777	18056819	roo	16	9132	11.5	12.5	12.0	1.2	9174	chr3L	18047645	intron	Eip75B -	chr3L	18052232	intron	Eip75B -	chr3L	18056819	intron	Eip75B -	chr3L_16_18050001	chr3L_18050001	w[1118]
1814	chr3L	18506074	18506106	chr3L	18509612	18509644	F-element	13	3538	15.0	8.5	11.8	1.0	3570	chr3L	18506074	intergenic	not near genes	chr3L	18507859	intergenic	not near genes	chr3L	18509644	intergenic	not near genes	chr3L_13_18505001	chr3L_18505001	w[1118]
1815	chr3L	18528566	18528600	chr3L	18537802	18537836	roo	10	9236	20.5	8.0	14.2	0.7	9270	chr3L	18528566	intergenic	not near genes	chr3L	18533201	intergenic	not near genes	chr3L	18537836	intergenic	not near genes	chr3L_10_18530001	chr3L_18530001	w[1118]
1818	chr3L	18593887	18593982	chr3L	18595942	18596035	Doc	14	2055	7.0	0.0	3.5	3.1	2148	chr3L	18593887	intergenic	term -	chr3L	18594961	intergenic	not near genes	chr3L	18596035	intergenic	CR45389 +	chr3L_14_18590001	chr3L_18590001	w[1118]
1822	chr3L	18710717	18710789	chr3L	18718742	18718814	Stalker2	14	8025	8.5	5.0	6.8	1.8	8097	chr3L	18710717	intergenic	not near genes	chr3L	18714766	intergenic	not near genes	chr3L	18718814	intergenic	not near genes	chr3L_14_18710001	chr3L_18710001	w[1118]
1828	chr3L	18772350	18772381	chr3L	18781106	18781137	roo	14	8756	21.0	8.5	14.8	0.9	8787	chr3L	18772350	intron	ftz-f1 -	chr3L	18776744	intron	ftz-f1 -	chr3L	18781137	intron	ftz-f1 -	chr3L_14_18775001	chr3L_18775001	w[1118]
1832	chr3L	18833719	18833760	chr3L	18834958	18834999	1360	14	1239	15.0	10.5	12.8	1.0	1280	chr3L	18833719	intron	Indy -	chr3L	18834359	intron	Indy -	chr3L	18834999	intron	Indy -	chr3L_14_18830001	chr3L_18830001	w[1118]
1843	chr3L	19008777	19008807	chr3L	19009193	19009223	jockey	8	416	18.0	13.0	15.5	0.5	446	chr3L	19008777	intron	nkd -	chr3L	19009000	intron	nkd -	chr3L	19009223	intron	nkd -	chr3L_8_19005001	chr3L_19005001	w[1118]
1846	chr3L	19116984	19117020	chr3L	19124506	19124542	mdg1	15	7522	20.5	13.0	16.8	0.8	7558	chr3L	19116984	intron	CG14082 -	chr3L	19120763	intron	CG14082 -	chr3L	19124542	intron	CG14082 -	chr3L_15_19120001	chr3L_19120001	w[1118]
1850	chr3L	19207993	19208036	chr3L	19209442	19209485	Doc	16	1449	5.5	5.0	5.2	2.6	1492	chr3L	19207993	intron	fz2 -	chr3L	19208739	intron	fz2 -	chr3L	19209485	intron	fz2 -	chr3L_16_19205001	chr3L_19205001	w[1118]
1860	chr3L	19398864	19398931	chr3L	19403656	19403723	F-element	20	4792	7.0	4.0	5.5	3.1	4859	chr3L	19398864	intron	CG32206 -	chr3L	19401294	intron	CG32206 -	chr3L	19403723	intron	CG32206 -	chr3L_20_19400001	chr3L_19400001	w[1118]
1867	chr3L	19820225	19820317	chr3L	19827849	19827941	412	29	7624	12.0	9.0	10.5	2.5	7716	chr3L	19820225	intron	Deaf1 +	chr3L	19824083	intron	Deaf1 +	chr3L	19827941	intron	Deaf1 +	chr3L_29_19820001	chr3L_19820001	w[1118]
1869	chr3L	19848444	19848478	chr3L	19857709	19857743	roo	6	9265	16.0	12.5	14.2	0.4	9299	chr3L	19848444	intron	Papss +	chr3L	19853094	intron	Papss +	chr3L	19857743	intron	Papss +	chr3L_6_19850001	chr3L_19850001	w[1118]
1876	chr3L	20113594	20113632	chr3L	20122926	20122964	roo	17	9332	25.0	12.0	18.5	0.9	9370	chr3L	20113594	intergenic	not near genes	chr3L	20118279	intergenic	not near genes	chr3L	20122964	intergenic	not near genes	chr3L_17_20115001	chr3L_20115001	w[1118]
1879	chr3L	20212544	20212582	chr3L	20218196	20218234	mdg3	18	5652	14.5	8.0	11.2	1.5	5690	chr3L	20212544	intergenic	CG7017 -	chr3L	20215389	intergenic	not near genes	chr3L	20218234	intergenic	CG6933 -	chr3L_18_20215001	chr3L_20215001	w[1118]
1880	chr3L	20257267	20257308	chr3L	20258462	20258503	pogo	21	1195	17.5	8.0	12.8	1.5	1236	chr3L	20257267	intron	rdgC +	chr3L	20257885	intron	rdgC +	chr3L	20258503	intron	rdgC +	chr3L_21_20255001	chr3L_20255001	w[1118]
1882	chr3L	20321046	20321052	chr3L	20342871	20342877	17.6	5	21825	13.5	31.0	22.2	0.2	21831	chr3L	20321046	exon	Spn77Bb +	chr3L	20331962	intergenic	not near genes	chr3L	20342877	exon	Spn77Bc +	chr3L_5_20330001	chr3L_20330001	w[1118]
1885	chr3L	20476695	20476729	chr3L	20484369	20484403	springer	18	7674	21.0	13.5	17.2	1.0	7708	chr3L	20476695	3` UTR	isoQC +	chr3L	20480549	intergenic	not near genes	chr3L	20484403	3` UTR	ZnT77C -	chr3L_18_20480001	chr3L_20480001	w[1118]
1888	chr3L	21014850	21014893	chr3L	21023406	21023449	Tirant	18	8556	14.5	6.5	10.5	1.6	8599	chr3L	21014850	intron	skd -	chr3L	21019150	intron	skd -	chr3L	21023449	intron	skd -	chr3L_18_21015001	chr3L_21015001	w[1118]
1889	chr3L	21306086	21306123	chr3L	21315320	21315357	roo	10	9234	16.0	8.5	12.2	0.8	9271	chr3L	21306086	3` UTR	CG7632 +	chr3L	21310722	intron	Pc -	chr3L	21315357	3` UTR	Pc -	chr3L_10_21310001	chr3L_21310001	w[1118]
1890	chr3L	22577559	22577595	chr3L	22582422	22582458	Doc	8	4863	16.0	12.0	14.0	0.5	4899	chr3L	22577559	intergenic	not near genes	chr3L	22580008	intergenic	not near genes	chr3L	22582458	3` UTR	CG14459 -	chr3L_8_22580001	chr3L_22580001	w[1118]
1891	chr3L	22865919	22865957	chr3L	22867127	22867165	Doc	15	1208	17.5	9.0	13.2	1.1	1246	chr3L	22865919	exon	CG33170 +	chr3L	22866542	intron	CG33170 +	chr3L	22867165	intron	CG33170 +	chr3L_15_22865001	chr3L_22865001	w[1118]
1896	chr3L	22989803	22989837	chr3L	22996852	22996886	297	14	7049	15.0	9.0	12.0	1.1	7083	chr3L	22989803	intergenic	not near genes	chr3L	22993344	intergenic	not near genes	chr3L	22996886	intergenic	not near genes	chr3L_14_22990001	chr3L_22990001	w[1118]
1898	chr3L	23165871	23165878	chr3L	23173390	23173399	Quasimodo	6	7519	23.0	15.5	19.2	0.3	7528	chr3L	23165871	intergenic	not near genes	chr3L	23169635	intergenic	not near genes	chr3L	23173399	intergenic	not near genes	chr3L_6_23165001	chr3L_23165001	w[1118]
1901	chr3L	23445401	23445420	chr3L	23445600	23445619	Idefix	4	199	17.0	5.5	11.2	0.3	218	chr3L	23445401	intergenic	not near genes	chr3L	23445510	intergenic	not near genes	chr3L	23445619	intergenic	not near genes	chr3L_4_23445001	chr3L_23445001	w[1118]
1902	chr3L	23570347	23570383	chr3L	23571036	23571072	mariner2	9	689	11.0	7.5	9.2	0.9	725	chr3L	23570347	intron	AGO3 +	chr3L	23570710	intron	AGO3 +	chr3L	23571072	intron	AGO3 +	chr3L_9_23570001	chr3L_23570001	w[1118]
1903	chr3L	23665466	23665506	chr3L	23665631	23665671	gypsy8	11	165	47.0	42.5	44.8	0.2	205	chr3L	23665466	intron	AGO3 +	chr3L	23665568	intron	AGO3 +	chr3L	23665671	intron	AGO3 +	chr3L_11_23665001	chr3L_23665001	w[1118]
1906	chr3L	23848786	23848806	chr3L	23849685	23849705	R1A1-element	8	899	8.0	10.0	9.0	0.8	919	chr3L	23848786	intron	CG40470 -	chr3L	23849246	intron	CG40470 -	chr3L	23849705	intron	CG40470 -	chr3L_8_23845001	chr3L_23845001	w[1118]
1910	chr3L	24012342	24012378	chr3L	24020758	24020794	roo	13	8416	10.5	10.0	10.2	1.2	8452	chr3L	24012342	intergenic	not near genes	chr3L	24016568	intergenic	not near genes	chr3L	24020794	intergenic	not near genes	chr3L_13_24015001	chr3L_24015001	w[1118]
1911	chr3L	24021231	24021254	chr3L	24022463	24022486	1360	11	1232	10.5	11.5	11.0	0.9	1255	chr3L	24021231	intergenic	not near genes	chr3L	24021858	intergenic	not near genes	chr3L	24022486	intergenic	not near genes	chr3L_11_24020001	chr3L_24020001	w[1118]
1913	chr3L	24168727	24168761	chr3L	24176130	24176165	ZAM	6	7403	12.5	6.5	9.5	0.6	7438	chr3L	24168727	intron	Snap25 +	chr3L	24172446	intron	Snap25 +	chr3L	24176165	intron	Snap25 +	chr3L_6_24170001	chr3L_24170001	w[1118]
1914	chr3L	24204210	24204221	chr3L	24226223	24226234	invader2	4	22013	32.0	17.0	24.5	0.2	22024	chr3L	24204210	intron	Snap25 +	chr3L	24215222	intron	Snap25 +	chr3L	24226234	intron	Snap25 +	chr3L_4_24215001	chr3L_24215001	w[1118]
1918	chr3L	24791834	24791861	chr3L	24796688	24796715	Doc	7	4854	12.5	4.5	8.5	0.7	4881	chr3L	24791834	intergenic	not near genes	chr3L	24794274	intergenic	not near genes	chr3L	24796715	intergenic	not near genes	chr3L_7_24790001	chr3L_24790001	w[1118]
1925	chr3L	25628441	25628459	chr3L	25633287	25633305	F-element	11	4846	22.0	12.0	17.0	0.6	4864	chr3L	25628441	intron	CG41343 -	chr3L	25630873	intron	CG41343 -	chr3L	25633305	intron	CG41343 -	chr3L_11_25630001	chr3L_25630001	w[1118]
1929	chr3L	26704469	26704492	chr3L	26709849	26709872	Transpac	7	5380	12.0	6.0	9.0	0.7	5403	chr3L	26704469	intergenic	not near genes	chr3L	26707170	intergenic	not near genes	chr3L	26709872	intergenic	not near genes	chr3L_7_26705001	chr3L_26705001	w[1118]
1930	chr3L	27356050	27356072	chr3L	27357324	27357346	1360	10	1274	17.5	0.0	8.8	1.0	1296	chr3L	27356050	intron	Dbp80 +	chr3L	27356698	intron	Dbp80 +	chr3L	27357346	intron	Dbp80 +	chr3L_10_27355001	chr3L_27355001	w[1118]
1933	chr3L	27980627	27980661	chr3L	27985500	27985534	Doc	17	4873	17.5	16.0	16.8	1.0	4907	chr3L	27980627	intron	CG17514 -	chr3L	27983080	intron	CG17514 -	chr3L	27985534	intron	CG17514 -	chr3L_17_27980001	chr3L_27980001	w[1118]
1936	chr3R	1867036	1867069	chr3R	1954893	1954926	Doc3-element	5	87857	24.5	4.0	14.2	0.3	87890	chr3R	1867036	intron	CG42623 +	chr3R	1910981	intron	CG42623 +	chr3R	1954926	intergenic	not near genes	chr3R_5_1910001	chr3R_1910001	w[1118]
1945	chr3R	4104979	4105014	chr3R	4110258	4110293	copia	12	5279	17.5	6.0	11.8	0.9	5314	chr3R	4104979	intergenic	not near genes	chr3R	4107636	intergenic	not near genes	chr3R	4110293	intergenic	not near genes	chr3R_12_4105001	chr3R_4105001	w[1118]
1946	chr3R	4206008	4206048	chr3R	4211658	4211698	mdg3	15	5650	16.0	10.5	13.2	1.1	5690	chr3R	4206008	intron	CG14636 -	chr3R	4208853	intron	CG14636 -	chr3R	4211698	intron	CG14636 -	chr3R_15_4205001	chr3R_4205001	w[1118]
1947	chr3R	4366696	4366731	chr3R	4375154	4375189	roo	14	8458	17.5	10.5	14.0	0.9	8493	chr3R	4366696	3` UTR	CG1090 +	chr3R	4370942	intergenic	not near genes	chr3R	4375189	5` UTR	CR44922 +	chr3R_14_4370001	chr3R_4370001	w[1118]
1949	chr3R	4408355	4408386	chr3R	4412734	4412765	Juan	16	4379	20.5	10.0	15.2	1.0	4410	chr3R	4408355	intron	CG32944 -	chr3R	4410560	intron	CG32944 -	chr3R	4412765	intron	CG32944 -	chr3R_16_4410001	chr3R_4410001	w[1118]
1950	chr3R	4413884	4413897	chr3R	4414450	4414463	INE-1	5	566	17.0	14.5	15.8	0.3	579	chr3R	4413884	intron	CG32944 -	chr3R	4414174	intron	CG32944 -	chr3R	4414463	intron	CG32944 -	chr3R_5_4410001	chr3R_4410001	w[1118]
1952	chr3R	4887415	4887454	chr3R	4894866	4894906	rover	12	7452	17.0	5.5	11.2	1.0	7491	chr3R	4887415	intergenic	not near genes	chr3R	4891160	intergenic	not near genes	chr3R	4894906	intergenic	not near genes	chr3R_12_4890001	chr3R_4890001	w[1118]
1953	chr3R	5045782	5045821	chr3R	5052959	5052998	HMS-Beagle	17	7177	14.5	10.5	12.5	1.3	7216	chr3R	5045782	3` UTR	CR43635 -	chr3R	5049390	intergenic	not near genes	chr3R	5052998	intergenic	CR45588 -	chr3R_17_5045001	chr3R_5045001	w[1118]
1957	chr3R	6015897	6015938	chr3R	6024453	6024494	Tirant	16	8556	19.5	7.5	13.5	1.1	8597	chr3R	6015897	intergenic	not near genes	chr3R	6020196	intergenic	not near genes	chr3R	6024494	intergenic	not near genes	chr3R_16_6020001	chr3R_6020001	w[1118]
1960	chr3R	6121113	6121124	chr3R	6121373	6121384	BS	6	260	0.0	8.5	4.2	1.2	271	chr3R	6121113	intergenic	not near genes	chr3R	6121248	intergenic	not near genes	chr3R	6121384	intergenic	not near genes	chr3R_6_6120001	chr3R_6120001	w[1118]
1961	chr3R	6158455	6158487	chr3R	6167113	6167145	Tirant	8	8658	18.5	9.5	14.0	0.5	8690	chr3R	6158455	intergenic	not near genes	chr3R	6162800	intergenic	not near genes	chr3R	6167145	intergenic	CG1077 +	chr3R_8_6160001	chr3R_6160001	w[1118]
1962	chr3R	6175109	6175145	chr3R	6182456	6182492	HMS-Beagle2	11	7347	15.5	5.5	10.5	1.0	7383	chr3R	6175109	intergenic	Osi1 +	chr3R	6178800	intron	CR45194 +	chr3R	6182492	intergenic	CR45194 +	chr3R_11_6175001	chr3R_6175001	w[1118]
1964	chr3R	6206226	6206261	chr3R	6206518	6206553	BS	17	292	18.0	10.0	14.0	1.1	327	chr3R	6206226	exon	Osi24 +	chr3R	6206390	intron	Osi24 +	chr3R	6206553	intron	Osi24 +	chr3R_17_6205001	chr3R_6205001	w[1118]
1966	chr3R	6509962	6509999	chr3R	6515118	6515155	jockey	15	5156	16.0	11.5	13.8	1.0	5193	chr3R	6509962	intergenic	not near genes	chr3R	6512558	intergenic	not near genes	chr3R	6515155	intergenic	not near genes	chr3R_15_6510001	chr3R_6510001	w[1118]
1969	chr3R	6737438	6737472	chr3R	6739300	6739334	Doc	10	1862	14.0	9.5	11.8	0.8	1896	chr3R	6737438	intron	pb -	chr3R	6738386	intron	pb -	chr3R	6739334	intron	pb -	chr3R_10_6735001	chr3R_6735001	w[1118]
1980	chr3R	7694510	7694554	chr3R	7713646	7713690	invader3	11	19136	9.0	9.0	9.0	1.1	19180	chr3R	7694510	3` UTR	Nlg1 +	chr3R	7704100	intergenic	not near genes	chr3R	7713690	intergenic	not near genes	chr3R_11_7700001	chr3R_7700001	w[1118]
1981	chr3R	7729406	7729442	chr3R	7737419	7737455	Stalker2	17	8013	22.5	13.0	17.8	0.9	8049	chr3R	7729406	intergenic	not near genes	chr3R	7733430	intergenic	not near genes	chr3R	7737455	intergenic	not near genes	chr3R_17_7730001	chr3R_7730001	w[1118]
1984	chr3R	7849580	7849614	chr3R	7850821	7850855	1360	8	1241	14.0	9.0	11.5	0.6	1275	chr3R	7849580	intron	CG34384 +	chr3R	7850218	intron	CG34384 +	chr3R	7850855	intron	CG34384 +	chr3R_8_7850001	chr3R_7850001	w[1118]
1986	chr3R	7973257	7973292	chr3R	7974394	7974429	1360	14	1137	17.5	15.0	16.2	0.8	1172	chr3R	7973257	intergenic	not near genes	chr3R	7973843	intergenic	not near genes	chr3R	7974429	3` UTR	CD98hc -	chr3R_14_7970001	chr3R_7970001	w[1118]
1990	chr3R	8090486	8090495	chr3R	8094049	8094058	297	6	3563	0.0	8.5	4.2	1.2	3572	chr3R	8090486	intergenic	CR44330 +	chr3R	8092272	intergenic	not near genes	chr3R	8094058	intergenic	CG7900 +	chr3R_6_8090001	chr3R_8090001	w[1118]
1991	chr3R	8094345	8094386	chr3R	8099725	8099766	Transpac	17	5380	17.5	9.0	13.2	1.2	5421	chr3R	8094345	intron	CG7900 +	chr3R	8097056	intron	CG7900 +	chr3R	8099766	intron	CG7900 +	chr3R_17_8095001	chr3R_8095001	w[1118]
1992	chr3R	8101694	8101735	chr3R	8104853	8104894	G2	18	3159	19.0	13.5	16.2	1.0	3200	chr3R	8101694	exon	CG7900 +	chr3R	8103294	intron	CG7900 +	chr3R	8104894	3` UTR	CG7900 +	chr3R_18_8100001	chr3R_8100001	w[1118]
1995	chr3R	8207499	8207576	chr3R	8208419	8208496	F-element	9	920	6.0	8.0	7.0	1.1	997	chr3R	8207499	intergenic	not near genes	chr3R	8207998	intergenic	not near genes	chr3R	8208496	intergenic	not near genes	chr3R_9_8205001	chr3R_8205001	w[1118]
2000	chr3R	8402958	8402985	chr3R	8412199	8412226	roo	12	9241	15.0	12.5	13.8	0.8	9268	chr3R	8402958	intron	CG45263 -	chr3R	8407592	intron	CG45263 -	chr3R	8412226	intron	CG45263 -	chr3R_12_8405001	chr3R_8405001	w[1118]
2003	chr3R	8570414	8570453	chr3R	8575125	8575164	HMS-Beagle	10	4711	21.0	2.5	11.8	0.8	4750	chr3R	8570414	intergenic	not near genes	chr3R	8572789	intergenic	not near genes	chr3R	8575164	intergenic	not near genes	chr3R_10_8570001	chr3R_8570001	w[1118]
2004	chr3R	8601712	8601743	chr3R	8610940	8610971	roo	15	9228	19.0	10.0	14.5	1.0	9259	chr3R	8601712	intron	5-HT2B +	chr3R	8606342	intron	5-HT2B +	chr3R	8610971	intron	5-HT2B +	chr3R_15_8605001	chr3R_8605001	w[1118]
2008	chr3R	8868734	8868771	chr3R	8872655	8872690	297	11	3919	15.0	13.0	14.0	0.7	3956	chr3R	8868734	intron	pyd -	chr3R	8870712	intron	pyd -	chr3R	8872690	intron	pyd -	chr3R_11_8870001	chr3R_8870001	w[1118]
2009	chr3R	8898163	8898194	chr3R	8913818	8913849	297	10	15655	19.0	9.5	14.2	0.7	15686	chr3R	8898163	intron	pyd -	chr3R	8906006	intron	pyd -	chr3R	8913849	intron	pyd -	chr3R_10_8905001	chr3R_8905001	w[1118]
2017	chr3R	9278725	9278756	chr3R	9284060	9284091	Rt1a	9	5335	17.0	11.5	14.2	0.6	5366	chr3R	9278725	intergenic	not near genes	chr3R	9281408	intergenic	not near genes	chr3R	9284091	intergenic	not near genes	chr3R_9_9280001	chr3R_9280001	w[1118]
2018	chr3R	10255320	10255354	chr3R	10260835	10260869	I-element	10	5515	24.5	10.0	17.2	0.5	5549	chr3R	10255320	intergenic	Sirt6 -,CG3999 +	chr3R	10258094	intron	Sirt6 -	chr3R	10260869	exon	Sirt6 -	chr3R_10_10255001	chr3R_10255001	w[1118]
2024	chr3R	11841001	11841042	chr3R	11846267	11846308	BS	22	5266	15.0	11.0	13.0	1.6	5307	chr3R	11841001	intron	CG6959 -	chr3R	11843654	intron	CG6959 -	chr3R	11846308	intron	CG6959 -	chr3R_22_11840001	chr3R_11840001	w[1118]
2026	chr3R	12022817	12022856	chr3R	12025069	12025108	pogo	14	2252	12.0	9.0	10.5	1.2	2291	chr3R	12022817	intergenic	not near genes	chr3R	12023962	intergenic	not near genes	chr3R	12025108	intergenic	not near genes	chr3R_14_12020001	chr3R_12020001	w[1118]
2044	chr3R	12864507	12864538	chr3R	12865067	12865098	roo	11	560	18.0	13.0	15.5	0.7	591	chr3R	12864507	intergenic	not near genes	chr3R	12864802	intergenic	not near genes	chr3R	12865098	intergenic	not near genes	chr3R_11_12860001	chr3R_12860001	w[1118]
2047	chr3R	12920094	12920129	chr3R	12925372	12925407	copia	21	5278	21.5	11.0	16.2	1.2	5313	chr3R	12920094	intron	beat-Vb +	chr3R	12922750	intron	beat-Vb +	chr3R	12925407	intron	beat-Vb +	chr3R_21_12920001	chr3R_12920001	w[1118]
2054	chr3R	13135770	13135791	chr3R	13138020	13138041	pogo	4	2250	19.5	11.0	15.2	0.2	2271	chr3R	13135770	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136906	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138041	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_4_13135001	chr3R_13135001	w[1118]
2055	chr3R	13142967	13143014	chr3R	13148618	13148665	mdg3	16	5651	19.5	4.5	12.0	1.2	5698	chr3R	13142967	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145816	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148665	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_16_13145001	chr3R_13145001	w[1118]
2061	chr3R	13314040	13314068	chr3R	13318904	13318932	Doc	7	4864	21.0	14.5	17.8	0.4	4892	chr3R	13314040	intergenic	not near genes	chr3R	13316486	intergenic	not near genes	chr3R	13318932	intergenic	CG45080 -	chr3R_7_13315001	chr3R_13315001	w[1118]
2065	chr3R	13517156	13517202	chr3R	13520046	13520094	jockey	7	2892	9.0	0.0	4.5	1.3	2938	chr3R	13517156	intergenic	not near genes	chr3R	13518625	intergenic	not near genes	chr3R	13520094	intergenic	not near genes	chr3R_7_13515001	chr3R_13515001	w[1118]
2080	chr3R	14021585	14021619	chr3R	14023477	14023511	S-element	15	1892	22.5	9.5	16.0	0.9	1926	chr3R	14021585	intron	rdx -	chr3R	14022548	intron	rdx -	chr3R	14023511	intron	rdx -	chr3R_15_14020001	chr3R_14020001	w[1118]
2086	chr3R	14180743	14180790	chr3R	14185583	14185630	F-element	19	4840	16.5	10.5	13.5	1.3	4887	chr3R	14180743	intron	Dop1R1 -	chr3R	14183186	intron	Dop1R1 -	chr3R	14185630	intron	Dop1R1 -	chr3R_19_14180001	chr3R_14180001	w[1118]
2087	chr3R	14194408	14194457	chr3R	14203612	14203661	roo	14	9204	6.5	0.0	3.2	3.3	9253	chr3R	14194408	intron	Dop1R1 -	chr3R	14199034	intron	Dop1R1 -	chr3R	14203661	intron	Dop1R1 -	chr3R_14_14195001	chr3R_14195001	w[1118]
2090	chr3R	14236871	14236910	chr3R	14244440	14244479	Idefix	9	7569	16.5	7.5	12.0	0.7	7608	chr3R	14236871	exon	CG43291 -	chr3R	14240675	intron	CG43291 -	chr3R	14244479	exon	CG43291 -	chr3R_9_14240001	chr3R_14240001	w[1118]
2091	chr3R	14246322	14246360	chr3R	14247897	14247935	jockey	19	1575	16.0	13.5	14.8	1.2	1613	chr3R	14246322	intergenic	not near genes	chr3R	14247128	intergenic	not near genes	chr3R	14247935	intergenic	not near genes	chr3R_19_14245001	chr3R_14245001	w[1118]
2109	chr3R	15041329	15041415	chr3R	15045188	15045274	Doc	9	3859	3.0	5.5	4.2	1.7	3945	chr3R	15041329	intergenic	not near genes	chr3R	15043302	intergenic	not near genes	chr3R	15045274	intergenic	not near genes	chr3R_9_15040001	chr3R_15040001	w[1118]
2110	chr3R	15059248	15059475	chr3R	15059551	15059637	BS	9	272	0.0	8.0	4.0	1.8	389	chr3R	15059248	intron	dpr9 -	chr3R	15059442	intron	dpr9 -	chr3R	15059637	intron	dpr9 -	chr3R_9_15055001	chr3R_15055001	w[1118]
2111	chr3R	15162487	15162524	chr3R	15167329	15167366	F-element	18	4842	19.5	11.0	15.2	1.1	4879	chr3R	15162487	intron	Gyc88E +	chr3R	15164926	intron	Gyc88E +	chr3R	15167366	intron	Gyc88E +	chr3R_18_15160001	chr3R_15160001	w[1118]
2116	chr3R	15601122	15601144	chr3R	15608719	15608741	412	8	7597	15.0	13.0	14.0	0.5	7619	chr3R	15601122	intergenic	not near genes	chr3R	15604932	intergenic	not near genes	chr3R	15608741	intergenic	not near genes	chr3R_8_15600001	chr3R_15600001	w[1118]
2117	chr3R	15618674	15618705	chr3R	15626223	15626254	blood	9	7549	7.0	7.5	7.2	1.1	7580	chr3R	15618674	intergenic	not near genes	chr3R	15622464	intergenic	not near genes	chr3R	15626254	intergenic	not near genes	chr3R_9_15620001	chr3R_15620001	w[1118]
2121	chr3R	15735169	15735235	chr3R	15739964	15740030	F-element	14	4795	5.5	8.0	6.8	1.8	4861	chr3R	15735169	intergenic	not near genes	chr3R	15737600	intergenic	not near genes	chr3R	15740030	intergenic	not near genes	chr3R_14_15735001	chr3R_15735001	w[1118]
2136	chr3R	16756260	16756296	chr3R	16762526	16762562	diver	15	6266	12.0	4.0	8.0	1.7	6302	chr3R	16756260	intron	bxd -	chr3R	16759411	intron	bxd -	chr3R	16762562	intron	bxd -	chr3R_15_16755001	chr3R_16755001	w[1118]
2146	chr3R	17294612	17294646	chr3R	17295115	17295149	BS	12	503	17.0	9.5	13.2	0.8	537	chr3R	17294612	intergenic	not near genes	chr3R	17294880	intergenic	not near genes	chr3R	17295149	intergenic	not near genes	chr3R_12_17290001	chr3R_17290001	w[1118]
2148	chr3R	17346634	17346661	chr3R	17348272	17348299	F-element	9	1638	19.5	15.0	17.2	0.5	1665	chr3R	17346634	intron	beat-IIa -	chr3R	17347466	intron	beat-IIa -	chr3R	17348299	intron	beat-IIa -	chr3R_9_17345001	chr3R_17345001	w[1118]
2152	chr3R	17509175	17509198	chr3R	17516805	17516828	412	12	7630	11.5	16.0	13.8	0.8	7653	chr3R	17509175	intergenic	not near genes	chr3R	17513002	intergenic	not near genes	chr3R	17516828	intergenic	not near genes	chr3R_12_17510001	chr3R_17510001	w[1118]
2156	chr3R	17591229	17591267	chr3R	17591740	17591778	F-element	14	511	12.5	10.0	11.2	1.1	549	chr3R	17591229	intergenic	not near genes	chr3R	17591504	intergenic	not near genes	chr3R	17591778	intergenic	not near genes	chr3R_14_17590001	chr3R_17590001	w[1118]
2163	chr3R	17925792	17925824	chr3R	17927334	17927366	hobo	13	1542	9.0	5.5	7.2	1.6	1574	chr3R	17925792	intron	cpo +	chr3R	17926579	intron	cpo +	chr3R	17927366	intron	cpo +	chr3R_13_17925001	chr3R_17925001	w[1118]
2165	chr3R	18032706	18032802	chr3R	18040454	18040550	opus	8	7748	2.5	0.0	1.2	3.6	7844	chr3R	18032706	intergenic	not near genes	chr3R	18036628	intergenic	not near genes	chr3R	18040550	intergenic	not near genes	chr3R_8_18035001	chr3R_18035001	w[1118]
2169	chr3R	18061458	18061616	chr3R	18063146	18063259	F-element	6	1660	0.0	0.0	0.0	6.0	1801	chr3R	18061458	intergenic	not near genes	chr3R	18062358	intergenic	not near genes	chr3R	18063259	intergenic	not near genes	chr3R_6_18060001	chr3R_18060001	w[1118]
2183	chr3R	18606443	18606479	chr3R	18610749	18610786	F-element	14	4307	16.0	8.0	12.0	1.1	4343	chr3R	18606443	intron,intron	qin +,CG14304 -	chr3R	18608614	intron,intron	qin +,CG14304 -	chr3R	18610786	intron,intron	qin +,CG14304 -	chr3R_14_18605001	chr3R_18605001	w[1118]
2216	chr3R	19744181	19744208	chr3R	19749502	19749529	Rt1a	19	5321	13.0	18.5	15.8	1.1	5348	chr3R	19744181	intron,intron	GluClalpha +,CR43488 -	chr3R	19746855	intron	GluClalpha +	chr3R	19749529	intron	GluClalpha +	chr3R_19_19745001	chr3R_19745001	w[1118]
2228	chr3R	20109486	20109515	chr3R	20114767	20114796	copia	7	5281	16.5	13.5	15.0	0.4	5310	chr3R	20109486	intergenic	not near genes	chr3R	20112141	intergenic	not near genes	chr3R	20114796	intergenic	CG10887 +	chr3R_7_20110001	chr3R_20110001	w[1118]
2229	chr3R	20156634	20156662	chr3R	20165879	20165908	roo	5	9245	14.0	12.0	13.0	0.4	9274	chr3R	20156634	intergenic	not near genes	chr3R	20161271	intergenic	not near genes	chr3R	20165908	intergenic	not near genes	chr3R_5_20160001	chr3R_20160001	w[1118]
2232	chr3R	20245220	20245265	chr3R	20248905	20248950	F-element	18	3685	13.5	1.0	7.2	2.2	3730	chr3R	20245220	3` UTR	Nlg4 +	chr3R	20247085	intergenic	not near genes	chr3R	20248950	intergenic	not near genes	chr3R_18_20245001	chr3R_20245001	w[1118]
2234	chr3R	20266454	20266489	chr3R	20272999	20273035	Burdock	5	6546	12.0	10.0	11.0	0.4	6581	chr3R	20266454	intron	cic +	chr3R	20269744	intron	cic +	chr3R	20273035	intron	cic +	chr3R_5_20265001	chr3R_20265001	w[1118]
2238	chr3R	20330938	20330975	chr3R	20331499	20331536	roo	10	561	12.0	10.5	11.2	0.8	598	chr3R	20330938	intergenic	Sirt2 +	chr3R	20331237	intergenic	Sirt2 +	chr3R	20331536	intergenic	not near genes	chr3R_10_20330001	chr3R_20330001	w[1118]
2249	chr3R	20506506	20506563	chr3R	20507395	20507441	BS	17	887	14.5	10.0	12.2	1.3	935	chr3R	20506506	intergenic	Or92a +	chr3R	20506974	intergenic	CG4288 -	chr3R	20507441	3` UTR	CG4288 -	chr3R_17_20505001	chr3R_20505001	w[1118]
2263	chr3R	20854412	20854442	chr3R	20859282	20859312	Doc	16	4870	20.0	12.5	16.2	0.9	4900	chr3R	20854412	exon	Ir93a -	chr3R	20856862	intron	Ir93a -	chr3R	20859312	exon	Ir93a -	chr3R_16_20855001	chr3R_20855001	w[1118]
2269	chr3R	21141614	21141651	chr3R	21150170	21150207	Tirant	15	8556	18.5	6.5	12.5	1.1	8593	chr3R	21141614	intron	SNF4Agamma +	chr3R	21145910	intron	SNF4Agamma +	chr3R	21150207	intron	SNF4Agamma +	chr3R_15_21145001	chr3R_21145001	w[1118]
2274	chr3R	21761063	21761098	chr3R	21768530	21768565	mdg1	13	7467	13.5	10.5	12.0	1.0	7502	chr3R	21761063	exon	CG42335 +	chr3R	21764814	intron	CG42335 +	chr3R	21768565	exon	CG42335 +	chr3R_13_21760001	chr3R_21760001	w[1118]
2286	chr3R	22234616	22234710	chr3R	22236010	22236104	pogo	12	1394	6.0	8.0	7.0	1.5	1488	chr3R	22234616	intron	SKIP +	chr3R	22235360	intron	SKIP +	chr3R	22236104	intron	SKIP +	chr3R_12_22235001	chr3R_22235001	w[1118]
2287	chr3R	22239460	22239523	chr3R	22248583	22248646	roo	15	9123	6.5	9.0	7.8	1.7	9186	chr3R	22239460	intron	SKIP +	chr3R	22244053	intron	SKIP +	chr3R	22248646	intron	SKIP +	chr3R_15_22240001	chr3R_22240001	w[1118]
2292	chr3R	22450482	22450520	chr3R	22453197	22453235	NOF	13	2715	20.5	10.0	15.2	0.8	2753	chr3R	22450482	intron	CG34376 +	chr3R	22451858	intron	CG34376 +	chr3R	22453235	intron	CG34376 +	chr3R_13_22450001	chr3R_22450001	w[1118]
2300	chr3R	22881130	22881215	chr3R	22884911	22884996	Doc	4	3781	5.5	6.0	5.8	0.6	3866	chr3R	22881130	intergenic	not near genes	chr3R	22883063	intergenic	not near genes	chr3R	22884996	intergenic	not near genes	chr3R_4_22880001	chr3R_22880001	w[1118]
2314	chr3R	23558352	23558368	chr3R	23560208	23560224	Bari1	8	1856	13.5	8.5	11.0	0.7	1872	chr3R	23558352	intron	beat-IV +	chr3R	23559288	intron	beat-IV +	chr3R	23560224	intron	beat-IV +	chr3R_8_23555001	chr3R_23555001	w[1118]
2324	chr3R	24072058	24072118	chr3R	24072569	24072629	jockey	14	511	6.5	8.5	7.5	1.6	571	chr3R	24072058	intron	4EHP -	chr3R	24072344	intron	4EHP -	chr3R	24072629	intron	4EHP -	chr3R_14_24070001	chr3R_24070001	w[1118]
2325	chr3R	24076859	24076895	chr3R	24078401	24078437	hobo	12	1542	15.0	11.0	13.0	0.9	1578	chr3R	24076859	intron	4EHP -	chr3R	24077648	intron	4EHP -	chr3R	24078437	intron	4EHP -	chr3R_12_24075001	chr3R_24075001	w[1118]
2331	chr3R	24730029	24730046	chr3R	24732482	24732499	Doc	7	2453	12.5	10.0	11.2	0.6	2470	chr3R	24730029	intron	tok +	chr3R	24731264	intron	tok +	chr3R	24732499	intron	tok +	chr3R_7_24730001	chr3R_24730001	w[1118]
2338	chr3R	24927071	24927099	chr3R	24931937	24931965	Doc	9	4866	19.5	12.0	15.8	0.5	4894	chr3R	24927071	3` UTR	Trf4-2 +	chr3R	24929518	intergenic	not near genes	chr3R	24931965	intergenic	CG11771 +	chr3R_9_24925001	chr3R_24925001	w[1118]
2345	chr3R	25725769	25725805	chr3R	25735004	25735040	roo	12	9235	14.5	8.0	11.2	1.0	9271	chr3R	25725769	intron	LpR2 -	chr3R	25730404	intron	LpR2 -	chr3R	25735040	intron	LpR2 -	chr3R_12_25730001	chr3R_25730001	w[1118]
2346	chr3R	25832634	25832665	chr3R	25841891	25841922	roo	12	9257	22.0	12.0	17.0	0.7	9288	chr3R	25832634	exon	alpha4GT2 +	chr3R	25837278	intron	alpha4GT2 +	chr3R	25841922	exon	alpha4GT2 +	chr3R_12_25835001	chr3R_25835001	w[1118]
2351	chr3R	26642679	26642708	chr3R	26643148	26643177	jockey	10	469	12.5	7.5	10.0	0.9	498	chr3R	26642679	intergenic	not near genes	chr3R	26642928	intergenic	not near genes	chr3R	26643177	intergenic	not near genes	chr3R_10_26640001	chr3R_26640001	w[1118]
2353	chr3R	26810494	26810527	chr3R	26811054	26811087	roo	12	560	13.5	15.0	14.2	0.8	593	chr3R	26810494	intron	Tl +	chr3R	26810790	intron	Tl +	chr3R	26811087	intron	Tl +	chr3R_12_26810001	chr3R_26810001	w[1118]
2360	chr3R	27007341	27007379	chr3R	27016551	27016589	roo	10	9210	17.0	12.5	14.8	0.6	9248	chr3R	27007341	intron	RYa-R +	chr3R	27011965	intron	RYa-R +	chr3R	27016589	intron	RYa-R +	chr3R_10_27010001	chr3R_27010001	w[1118]
2364	chr3R	27140466	27140493	chr3R	27148151	27148178	412	8	7685	16.5	17.0	16.8	0.4	7712	chr3R	27140466	intron	CG6051 -	chr3R	27144322	intron	CG6051 -	chr3R	27148178	intron	CG6051 -	chr3R_8_27140001	chr3R_27140001	w[1118]
2366	chr3R	27342731	27342769	chr3R	27351387	27351425	Tirant	13	8656	21.0	16.5	18.8	0.7	8694	chr3R	27342731	intron	CG42534 +	chr3R	27347078	intron	CG42534 +	chr3R	27351425	intron	CG42534 +	chr3R_13_27345001	chr3R_27345001	w[1118]
2370	chr3R	27725510	27725539	chr3R	27731028	27731056	I-element	4	5518	15.5	11.0	13.2	0.3	5546	chr3R	27725510	intergenic	not near genes	chr3R	27728283	intergenic	not near genes	chr3R	27731056	intergenic	not near genes	chr3R_4_27725001	chr3R_27725001	w[1118]
2372	chr3R	27791585	27791615	chr3R	27794804	27794832	Rt1c	8	3217	14.0	11.5	12.8	0.6	3247	chr3R	27791585	intron	CG34353 -	chr3R	27793208	intron	CG34353 -	chr3R	27794832	intron	CG34353 -	chr3R_8_27790001	chr3R_27790001	w[1118]
2374	chr3R	27856696	27856734	chr3R	27858254	27858292	hopper2	9	1558	13.5	5.0	9.2	0.9	1596	chr3R	27856696	intron	CG34353 -	chr3R	27857494	intron	CG34353 -	chr3R	27858292	intron	CG34353 -	chr3R_9_27855001	chr3R_27855001	w[1118]
2375	chr3R	27862892	27862926	chr3R	27868272	27868306	Transpac	15	5380	12.0	12.0	12.0	1.2	5414	chr3R	27862892	intron	CG34353 -	chr3R	27865599	intron	CG34353 -	chr3R	27868306	intron	CG34353 -	chr3R_15_27865001	chr3R_27865001	w[1118]
2376	chr3R	27875643	27875670	chr3R	27882773	27882800	297	10	7130	17.5	7.5	12.5	0.7	7157	chr3R	27875643	intron	CG34353 -	chr3R	27879222	intron	CG34353 -	chr3R	27882800	intron	CG34353 -	chr3R_10_27875001	chr3R_27875001	w[1118]
2382	chr3R	28173612	28173644	chr3R	28181117	28181149	mdg1	15	7505	20.0	8.0	14.0	1.0	7537	chr3R	28173612	intron	CG34354 +	chr3R	28177380	intron	CG34354 +	chr3R	28181149	intron	CG34354 +	chr3R_15_28175001	chr3R_28175001	w[1118]
2385	chr3R	28253282	28253314	chr3R	28255867	28255899	jockey	9	2585	17.5	9.5	13.5	0.6	2617	chr3R	28253282	intergenic	not near genes	chr3R	28254590	intergenic	not near genes	chr3R	28255899	intergenic	not near genes	chr3R_9_28250001	chr3R_28250001	w[1118]
2388	chr3R	28302032	28302114	chr3R	28302549	28302631	jockey	22	517	9.0	5.5	7.2	2.7	599	chr3R	28302032	intergenic	not near genes	chr3R	28302332	intergenic	not near genes	chr3R	28302631	intergenic	not near genes	chr3R_22_28300001	chr3R_28300001	w[1118]
2398	chr3R	28758254	28758282	chr3R	28771336	28771364	Stalker4	10	13082	12.0	5.5	8.8	1.0	13110	chr3R	28758254	intergenic	aqrs -	chr3R	28764809	intergenic	not near genes	chr3R	28771364	intergenic	not near genes	chr3R_10_28760001	chr3R_28760001	w[1118]
2399	chr3R	28792810	28792849	chr3R	28797980	28798019	jockey	13	5170	13.0	11.5	12.2	1.0	5209	chr3R	28792810	intergenic	not near genes	chr3R	28795414	intergenic	not near genes	chr3R	28798019	intergenic	not near genes	chr3R_13_28795001	chr3R_28795001	w[1118]
2411	chr3R	29079320	29079404	chr3R	29080767	29080851	NOF	14	1447	8.0	11.5	9.8	1.3	1531	chr3R	29079320	intron	CG11873 +	chr3R	29080086	intron	CG11873 +	chr3R	29080851	intron	CG11873 +	chr3R_14_29080001	chr3R_29080001	w[1118]
2422	chr3R	29319757	29319773	chr3R	29320151	29320167	jockey	10	394	25.5	7.0	16.2	0.6	410	chr3R	29319757	intergenic	Cnx99A -	chr3R	29319962	intergenic	Cnx99A -	chr3R	29320167	intergenic	not near genes	chr3R_10_29315001	chr3R_29315001	w[1118]
2427	chr3R	29406562	29406585	chr3R	29407923	29407946	jockey	11	1361	19.0	8.0	13.5	0.8	1384	chr3R	29406562	intron	Ptp99A +	chr3R	29407254	intron	Ptp99A +	chr3R	29407946	intron	Ptp99A +	chr3R_11_29405001	chr3R_29405001	w[1118]
2432	chr3R	29738220	29738296	chr3R	29739763	29739839	hobo	16	1543	8.0	11.0	9.5	1.5	1619	chr3R	29738220	intergenic	CG1969 +,CG7598 +	chr3R	29739030	intron	CG1969 +	chr3R	29739839	5` UTR	CG1969 +	chr3R_16_29735001	chr3R_29735001	w[1118]
2434	chr3R	29760300	29760336	chr3R	29761576	29761612	pogo	8	1276	15.5	9.0	12.2	0.6	1312	chr3R	29760300	intergenic	not near genes	chr3R	29760956	intergenic	not near genes	chr3R	29761612	intergenic	not near genes	chr3R_8_29760001	chr3R_29760001	w[1118]
2438	chr3R	29881959	29881997	chr3R	29891191	29891229	roo	19	9232	17.5	10.0	13.8	1.3	9270	chr3R	29881959	intron	CG31038 +	chr3R	29886594	intron	CG31038 +	chr3R	29891229	intron	CG31038 +	chr3R_19_29885001	chr3R_29885001	w[1118]
2445	chr3R	30084794	30084829	chr3R	30086336	30086371	hobo	12	1542	12.5	5.5	9.0	1.2	1577	chr3R	30084794	intron	sima +	chr3R	30085582	intron	sima +	chr3R	30086371	intron	sima +	chr3R_12_30085001	chr3R_30085001	w[1118]
2454	chr3R	30679451	30679496	chr3R	30686995	30687040	blood	14	7544	12.0	7.5	9.8	1.3	7589	chr3R	30679451	intergenic	not near genes	chr3R	30683246	intergenic	not near genes	chr3R	30687040	intergenic	not near genes	chr3R_14_30680001	chr3R_30680001	w[1118]
2459	chr3R	30818757	30818840	chr3R	30820397	30820480	1360	8	1640	4.5	10.0	7.2	1.0	1723	chr3R	30818757	intron	cindr +	chr3R	30819618	intron	cindr +	chr3R	30820480	intron	cindr +	chr3R_8_30815001	chr3R_30815001	w[1118]
2467	chr3R	31074170	31074209	chr3R	31081843	31081881	springer	14	7673	19.5	8.5	14.0	0.9	7711	chr3R	31074170	intron	Sox100B +	chr3R	31078026	intron	Sox100B +	chr3R	31081881	intron	Sox100B +	chr3R_14_31075001	chr3R_31075001	w[1118]
2470	chr3R	31279318	31279350	chr3R	31285584	31285616	diver	11	6266	16.0	6.5	11.2	0.9	6298	chr3R	31279318	intergenic	not near genes	chr3R	31282467	intergenic	not near genes	chr3R	31285616	intergenic	not near genes	chr3R_11_31280001	chr3R_31280001	w[1118]
2472	chr3R	31330386	31330407	chr3R	31335663	31335684	copia	8	5277	16.5	9.5	13.0	0.6	5298	chr3R	31330386	intron	CG34347 +	chr3R	31333035	intron	CG34347 +	chr3R	31335684	intron	CG34347 +	chr3R_8_31330001	chr3R_31330001	w[1118]
2475	chr3R	31413029	31413051	chr3R	31418304	31418326	copia	6	5275	21.0	0.0	10.5	0.5	5297	chr3R	31413029	intron	Gprk2 +	chr3R	31415678	intron	Gprk2 +	chr3R	31418326	intron	Gprk2 +	chr3R_6_31415001	chr3R_31415001	w[1118]
2481	chr3R	31691467	31691501	chr3R	31696308	31696342	Doc	9	4841	13.5	8.0	10.8	0.8	4875	chr3R	31691467	intergenic	not near genes	chr3R	31693904	intergenic	not near genes	chr3R	31696342	intergenic	not near genes	chr3R_9_31690001	chr3R_31690001	w[1118]
2486	chr3R	31997932	31997970	chr3R	32005476	32005515	blood	15	7545	17.0	11.0	14.0	1.0	7583	chr3R	31997932	intron	heph -	chr3R	32001724	intron	heph -	chr3R	32005515	intron	heph -	chr3R_15_32000001	chr3R_32000001	w[1118]
2487	chr4	76435	76465	chr4	81953	81983	I-element	12	5518	18.0	13.0	15.5	0.7	5548	chr4	76435	intron	pan +	chr4	79209	intron	pan +	chr4	81983	intron	pan +	chr4_12_75001	chr4_75001	w[1118]
2490	chr4	319938	319967	chr4	328189	328218	Stalker2	13	8251	12.5	15.0	13.8	0.9	8280	chr4	319938	3` UTR	CG32850 +	chr4	324078	intron	CG32850 +	chr4	328218	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_13_320001	chr4_320001	w[1118]
2493	chr4	580238	580258	chr4	580427	580447	Fw2	12	189	20.5	8.5	14.5	0.8	209	chr4	580238	intergenic	Ephrin +	chr4	580342	intergenic	Ephrin +	chr4	580447	intergenic	Ephrin +	chr4_12_580001	chr4_580001	w[1118]
2495	chr4	671546	671581	chr4	680204	680239	Tirant	9	8658	19.5	11.0	15.2	0.6	8693	chr4	671546	intron	CG11360 +	chr4	675892	intron	CG11360 +	chr4	680239	intron	CG11360 +	chr4_9_675001	chr4_675001	w[1118]
2498	chrX	318418	318445	chrX	323579	323606	flea	6	5161	12.5	11.5	12.0	0.5	5188	chrX	318418	intron,intron	CG3777 +,CG32816 -	chrX	321012	intron,intron	CG3777 +,CG32816 -	chrX	323606	intron,intron	CG3777 +,CG32816 -	chrX_6_320001	chrX_320001	w[1118]
2499	chrX	428357	428394	chrX	434617	434654	3S18	12	6260	14.5	10.5	12.5	0.9	6297	chrX	428357	intron	CG32816 -	chrX	431506	intron	CG32816 -	chrX	434654	intron	CG32816 -	chrX_12_430001	chrX_430001	w[1118]
2500	chrX	551367	551396	chrX	559006	559035	412	8	7638	12.0	8.0	10.0	0.7	7668	chrX	551367	intron	Appl +	chrX	555201	intron	Appl +	chrX	559035	intron	Appl +	chrX_8_555001	chrX_555001	w[1118]
2502	chrX	812208	812240	chrX	817916	817946	297	13	5706	14.0	10.0	12.0	1.0	5738	chrX	812208	intron	CG43867 -	chrX	815077	intron	CG43867 -	chrX	817946	intron	CG43867 -	chrX_13_815001	chrX_815001	w[1118]
2503	chrX	827543	827580	chrX	835410	835447	roo	6	7867	15.5	11.5	13.5	0.4	7904	chrX	827543	intron	CG43867 -	chrX	831495	intron	CG43867 -	chrX	835447	intron	CG43867 -	chrX_6_830001	chrX_830001	w[1118]
2505	chrX	906636	906679	chrX	908500	908543	S-element	17	1864	13.0	4.5	8.8	1.7	1907	chrX	906636	intron	CG43867 -	chrX	907590	intron	CG43867 -	chrX	908543	intron	CG43867 -	chrX_17_905001	chrX_905001	w[1118]
2507	chrX	1033291	1033319	chrX	1040999	1041027	412	10	7708	15.5	7.0	11.2	0.8	7736	chrX	1033291	intron	su(w[a]) +	chrX	1037159	intron	su(w[a]) +	chrX	1041027	intron	su(w[a]) +	chrX_10_1035001	chrX_1035001	w[1118]
2509	chrX	1063699	1063734	chrX	1072567	1072602	roo	11	8868	15.0	15.5	15.2	0.7	8903	chrX	1063699	intron	CR44779 +	chrX	1068150	intron	CR44779 +	chrX	1072602	intron	CR44779 +	chrX_11_1065001	chrX_1065001	w[1118]
2510	chrX	1357713	1357748	chrX	1367958	1367993	Doc	16	10245	20.0	10.0	15.0	1.0	10280	chrX	1357713	intergenic	png -	chrX	1362853	intergenic	not near genes	chrX	1367993	intergenic	not near genes	chrX_16_1360001	chrX_1360001	w[1118]
2513	chrX	1517983	1518017	chrX	1523460	1523494	jockey	12	5477	15.0	8.0	11.5	1.0	5511	chrX	1517983	intergenic	inc +	chrX	1520738	intergenic	not near genes	chrX	1523494	intergenic	not near genes	chrX_12_1520001	chrX_1520001	w[1118]
2518	chrX	1930483	1930511	chrX	1938129	1938157	opus	16	7646	14.5	7.5	11.0	1.3	7674	chrX	1930483	3` UTR	CG11596 +	chrX	1934320	intergenic	not near genes	chrX	1938157	3` UTR	CG3857 -	chrX_16_1930001	chrX_1930001	w[1118]
2519	chrX	1954832	1954863	chrX	1962847	1962878	Stalker2	7	8015	3.5	10.5	7.0	0.9	8046	chrX	1954832	intron	Hr4 +	chrX	1958855	intron	Hr4 +	chrX	1962878	intron	Hr4 +	chrX_7_1955001	chrX_1955001	w[1118]
2521	chrX	2399780	2399863	chrX	2408208	2408279	roo	12	8421	5.0	3.5	4.2	2.3	8499	chrX	2399780	intergenic	not near genes	chrX	2404030	intergenic	not near genes	chrX	2408279	intergenic	not near genes	chrX_12_2400001	chrX_2400001	w[1118]
2524	chrX	2610322	2610362	chrX	2617514	2617554	HMS-Beagle	6	7192	18.5	5.5	12.0	0.5	7232	chrX	2610322	5` UTR	CG8636 -	chrX	2613938	intergenic	not near genes	chrX	2617554	intergenic	Tsp3A -	chrX_6_2610001	chrX_2610001	w[1118]
2526	chrX	2664305	2664404	chrX	2665536	2665631	1360	10	1228	4.5	0.0	2.2	3.1	1326	chrX	2664305	intron	sgg +	chrX	2664968	intron	sgg +	chrX	2665631	intron	sgg +	chrX_10_2660001	chrX_2660001	w[1118]
2529	chrX	2823728	2823766	chrX	2832351	2832389	roo	11	8623	14.0	3.5	8.8	1.1	8661	chrX	2823728	intron	kirre +	chrX	2828058	intron	kirre +	chrX	2832389	intron	kirre +	chrX_11_2825001	chrX_2825001	w[1118]
2530	chrX	2844845	2844876	chrX	2852330	2852361	mdg1	13	7485	15.5	8.5	12.0	1.0	7516	chrX	2844845	intron	kirre +	chrX	2848603	intron	kirre +	chrX	2852361	intron	kirre +	chrX_13_2845001	chrX_2845001	w[1118]
2536	chrX	3057968	3057997	chrX	3058284	3058313	pogo	8	316	15.0	6.5	10.8	0.7	345	chrX	3057968	intron	kirre +	chrX	3058140	intron	kirre +	chrX	3058313	intron	kirre +	chrX_8_3055001	chrX_3055001	w[1118]
2537	chrX	3075556	3075648	chrX	3080942	3081024	Transpac	9	5384	6.0	0.0	3.0	2.2	5468	chrX	3075556	intron	kirre +	chrX	3078290	intron	kirre +	chrX	3081024	intron	kirre +	chrX_9_3075001	chrX_3075001	w[1118]
2540	chrX	3178435	3178440	chrX	3186173	3186178	opus	5	7738	11.0	11.5	11.2	0.4	7743	chrX	3178435	intron	dnc +	chrX	3182306	intron	dnc +	chrX	3186178	intron	dnc +	chrX_5_3180001	chrX_3180001	w[1118]
2554	chrX	3493032	3493116	chrX	3502266	3502347	roo	16	9233	5.5	4.0	4.8	2.8	9315	chrX	3493032	intron,exon	CR44999 +,Gas8 -	chrX	3497690	intron,intron	CR44999 +,Gas8 -	chrX	3502347	intron,intron	CR44999 +,Gas8 -	chrX_16_3495001	chrX_3495001	w[1118]
2555	chrX	3597490	3597526	chrX	3619732	3619769	roo	13	22243	19.0	6.0	12.5	1.0	22279	chrX	3597490	intron	AstA-R1 +	chrX	3608630	intron	AstA-R1 +	chrX	3619769	intron	AstA-R1 +	chrX_13_3605001	chrX_3605001	w[1118]
2559	chrX	3726714	3726729	chrX	3730186	3730201	NOF	4	3472	10.0	7.5	8.8	0.4	3487	chrX	3726714	intron	tlk +	chrX	3728458	intron	tlk +	chrX	3730201	intron	tlk +	chrX_4_3725001	chrX_3725001	w[1118]
2562	chrX	3842281	3842353	chrX	3842569	3842641	pogo	13	288	10.0	9.0	9.5	1.2	360	chrX	3842281	intron	ec +	chrX	3842461	intron	ec +	chrX	3842641	intron	ec +	chrX_13_3840001	chrX_3840001	w[1118]
2570	chrX	4157838	4157917	chrX	4164966	4165045	297	13	7128	5.0	10.5	7.8	1.5	7207	chrX	4157838	intron	Fas2 -	chrX	4161442	intron	Fas2 -	chrX	4165045	intron	Fas2 -	chrX_13_4160001	chrX_4160001	w[1118]
2580	chrX	4700325	4700367	chrX	4700743	4700785	jockey	10	418	12.0	8.5	10.2	0.9	460	chrX	4700325	3` UTR	ctp +	chrX	4700555	3` UTR	ctp +	chrX	4700785	3` UTR	ctp +	chrX_10_4700001	chrX_4700001	w[1118]
2582	chrX	4763194	4763221	chrX	4763757	4763784	Stalker4	6	563	16.5	8.5	12.5	0.4	590	chrX	4763194	intergenic	not near genes	chrX	4763489	intergenic	not near genes	chrX	4763784	intergenic	not near genes	chrX_6_4760001	chrX_4760001	w[1118]
2583	chrX	4792324	4792353	chrX	4792832	4792861	jockey	9	508	12.0	9.5	10.8	0.8	537	chrX	4792324	intergenic	not near genes	chrX	4792592	intergenic	not near genes	chrX	4792861	intergenic	not near genes	chrX_9_4790001	chrX_4790001	w[1118]
2585	chrX	4827912	4827945	chrX	4835358	4835391	Stalker4	7	7446	13.0	8.5	10.8	0.6	7479	chrX	4827912	intergenic	not near genes	chrX	4831652	intergenic	not near genes	chrX	4835391	intergenic	not near genes	chrX_7_4830001	chrX_4830001	w[1118]
2588	chrX	4989977	4990015	chrX	4997266	4997304	roo	13	7289	6.0	9.5	7.8	1.5	7327	chrX	4989977	intron	CR44833 -	chrX	4993640	intron	CR44833 -	chrX	4997304	intron	CR44833 -	chrX_13_4990001	chrX_4990001	w[1118]
2589	chrX	5096217	5096241	chrX	5103857	5103881	springer	4	7640	3.5	6.0	4.8	0.7	7664	chrX	5096217	intron,intron	CG15465 +,rg +	chrX	5100049	intron,intron	CG15465 +,rg +	chrX	5103881	intron,intron	CG15465 +,rg +	chrX_4_5100001	chrX_5100001	w[1118]
2596	chrX	5338643	5338669	chrX	5339971	5339997	jockey	6	1328	12.0	0.5	6.2	0.8	1354	chrX	5338643	intergenic	not near genes	chrX	5339320	intergenic	not near genes	chrX	5339997	intergenic	SK +	chrX_6_5335001	chrX_5335001	w[1118]
2600	chrX	5524784	5524801	chrX	5528718	5528735	412	7	3934	16.5	5.5	11.0	0.6	3951	chrX	5524784	intergenic	snoRNA:Psi28S-3342 -	chrX	5526760	intergenic	not near genes	chrX	5528735	intergenic	Vsx2 -	chrX_7_5525001	chrX_5525001	w[1118]
2601	chrX	5537640	5537687	chrX	5537798	5537845	roo	13	158	10.0	8.5	9.2	1.3	205	chrX	5537640	intron	Vsx2 -	chrX	5537742	intron	Vsx2 -	chrX	5537845	intron	Vsx2 -	chrX_13_5535001	chrX_5535001	w[1118]
2604	chrX	5727349	5727415	chrX	5732163	5732229	Doc	9	4814	7.5	10.5	9.0	0.9	4880	chrX	5727349	intron	CG32758 -	chrX	5729789	intron	CG32758 -	chrX	5732229	intron	CG32758 -	chrX_9_5725001	chrX_5725001	w[1118]
2609	chrX	5883744	5883786	chrX	5884060	5884102	pogo	13	316	11.0	8.0	9.5	1.2	358	chrX	5883744	intron	CR45668 -	chrX	5883923	intron	CR45668 -	chrX	5884102	intron	CR45668 -	chrX_13_5880001	chrX_5880001	w[1118]
2610	chrX	5884101	5884137	chrX	5884417	5884453	pogo	15	316	8.0	10.5	9.2	1.5	352	chrX	5884101	intron	CR45668 -	chrX	5884277	intron	CR45668 -	chrX	5884453	intron	CR45668 -	chrX_15_5880001	chrX_5880001	w[1118]
2613	chrX	6171522	6171547	chrX	6179030	6179055	Quasimodo	9	7508	14.5	10.5	12.5	0.7	7533	chrX	6171522	intron	Ca-alpha1T -	chrX	6175288	intron	Ca-alpha1T -	chrX	6179055	intron	Ca-alpha1T -	chrX_9_6175001	chrX_6175001	w[1118]
2616	chrX	6392814	6392836	chrX	6397654	6397676	Doc	9	4840	14.5	0.0	7.2	1.1	4862	chrX	6392814	intergenic	not near genes	chrX	6395245	intergenic	not near genes	chrX	6397676	intergenic	not near genes	chrX_9_6395001	chrX_6395001	w[1118]
2617	chrX	6445244	6445269	chrX	6451076	6451102	297	6	5833	13.5	3.0	8.2	0.7	5858	chrX	6445244	intron	CG42340 -	chrX	6448173	intron	CG42340 -	chrX	6451102	intron	CG42340 -	chrX_6_6445001	chrX_6445001	w[1118]
2620	chrX	6562758	6562788	chrX	6571315	6571345	Tirant	8	8557	17.0	9.5	13.2	0.6	8587	chrX	6562758	intron	CG34417 +	chrX	6567052	intron	CG34417 +	chrX	6571345	intron	CG34417 +	chrX_8_6565001	chrX_6565001	w[1118]
2622	chrX	6605424	6605495	chrX	6608522	6608593	Burdock	6	3098	6.0	7.5	6.8	0.8	3169	chrX	6605424	intron	pigs +	chrX	6607008	intron	pigs +	chrX	6608593	intron	pigs +	chrX_6_6605001	chrX_6605001	w[1118]
2630	chrX	7023541	7023578	chrX	7031006	7031043	Tabor	10	7465	13.0	9.5	11.2	0.8	7502	chrX	7023541	intron	CG12541 -	chrX	7027292	intron	CG12541 -	chrX	7031043	intron	CG12541 -	chrX_10_7025001	chrX_7025001	w[1118]
2633	chrX	7125219	7125223	chrX	7134453	7134457	roo	5	9234	0.5	16.0	8.2	0.5	9238	chrX	7125219	intergenic	not near genes	chrX	7129838	intergenic	not near genes	chrX	7134457	intergenic	not near genes	chrX_5_7125001	chrX_7125001	w[1118]
2636	chrX	7845665	7845707	chrX	7847231	7847273	hopper2	15	1566	12.5	9.5	11.0	1.2	1608	chrX	7845665	intergenic	not near genes	chrX	7846469	intergenic	not near genes	chrX	7847273	intergenic	not near genes	chrX_15_7845001	chrX_7845001	w[1118]
2643	chrX	8031378	8031402	chrX	8035762	8035786	Juan	9	4384	15.5	17.5	16.5	0.5	4408	chrX	8031378	intergenic	not near genes	chrX	8033582	intergenic	not near genes	chrX	8035786	3` UTR	CG2233 -	chrX_9_8030001	chrX_8030001	w[1118]
2648	chrX	8364785	8364809	chrX	8365257	8365281	BS	12	472	17.0	10.5	13.8	0.8	496	chrX	8364785	intron	nAChRalpha3 -	chrX	8365033	intron	nAChRalpha3 -	chrX	8365281	intron	nAChRalpha3 -	chrX_12_8365001	chrX_8365001	w[1118]
2658	chrX	8922266	8922304	chrX	8922775	8922813	jockey	12	509	13.5	8.0	10.8	1.0	547	chrX	8922266	intron	rdgA +	chrX	8922540	intron	rdgA +	chrX	8922813	intron	rdgA +	chrX_12_8920001	chrX_8920001	w[1118]
2659	chrX	8948699	8948735	chrX	8956284	8956320	roo	19	7585	16.5	8.5	12.5	1.4	7621	chrX	8948699	intron	rdgA +	chrX	8952510	intron	rdgA +	chrX	8956320	intron	rdgA +	chrX_19_8950001	chrX_8950001	w[1118]
2669	chrX	9508073	9508111	chrX	9509666	9509704	jockey	16	1593	11.0	10.5	10.8	1.4	1631	chrX	9508073	intron	CG32700 -	chrX	9508888	intron	CG32700 -	chrX	9509704	intron	CG32700 -	chrX_16_9505001	chrX_9505001	w[1118]
2670	chrX	9575734	9575760	chrX	9576133	9576159	mdg3	7	399	12.0	11.0	11.5	0.6	425	chrX	9575734	intron,exon	CG32699 -,CG42395 -	chrX	9575946	intron,intron	CG32699 -,CG42395 -	chrX	9576159	intron,5` UTR	CG32699 -,CG42395 -	chrX_7_9575001	chrX_9575001	w[1118]
2677	chrX	10138154	10138192	chrX	10145733	10145771	412	8	7579	12.0	5.5	8.8	0.8	7617	chrX	10138154	intron,intron	RhoU +,CR44894 -	chrX	10141962	intron,intron	RhoU +,CR44894 -	chrX	10145771	intron,intron	RhoU +,CR44894 -	chrX_8_10140001	chrX_10140001	w[1118]
2682	chrX	10348738	10348832	chrX	10356378	10356487	springer	12	7641	9.5	0.0	4.8	2.1	7749	chrX	10348738	intergenic	snoRNA:U3:9B +	chrX	10352612	intergenic	not near genes	chrX	10356487	intergenic	l(1)G0289 -	chrX_12_10350001	chrX_10350001	w[1118]
2685	chrX	10550799	10550829	chrX	10552341	10552371	hobo	13	1542	9.0	9.5	9.2	1.3	1572	chrX	10550799	intron	spri -	chrX	10551585	intron	spri -	chrX	10552371	intron	spri -	chrX_13_10550001	chrX_10550001	w[1118]
2686	chrX	10685988	10686030	chrX	10691200	10691242	roo	17	5212	14.5	0.0	7.2	2.1	5254	chrX	10685988	intron	X11Lbeta +	chrX	10688615	intron	X11Lbeta +	chrX	10691242	intron	X11Lbeta +	chrX_17_10685001	chrX_10685001	w[1118]
2688	chrX	10772612	10772696	chrX	10772770	10772854	Tirant	19	158	5.5	7.0	6.2	2.6	242	chrX	10772612	5` UTR	CG15211 +	chrX	10772733	intron	CG15211 +	chrX	10772854	intron	CG15211 +	chrX_19_10770001	chrX_10770001	w[1118]
2692	chrX	11095945	11095973	chrX	11103122	11103150	HMS-Beagle	9	7177	12.0	9.5	10.8	0.8	7205	chrX	11095945	intergenic	not near genes	chrX	11099548	intergenic	not near genes	chrX	11103150	intron	CG42249 +	chrX_9_11095001	chrX_11095001	w[1118]
2695	chrX	11184186	11184214	chrX	11189340	11189368	flea	6	5154	13.5	12.0	12.8	0.4	5182	chrX	11184186	intergenic	not near genes	chrX	11186777	intergenic	not near genes	chrX	11189368	intergenic	not near genes	chrX_6_11185001	chrX_11185001	w[1118]
2699	chrX	11312003	11312030	chrX	11319431	11319458	Stalker2	11	7428	16.0	8.0	12.0	0.8	7455	chrX	11312003	intergenic	not near genes	chrX	11315730	intergenic	not near genes	chrX	11319458	intergenic	not near genes	chrX_11_11315001	chrX_11315001	w[1118]
2702	chrX	11534979	11535018	chrX	11541524	11541563	Burdock	16	6545	18.5	10.0	14.2	1.1	6584	chrX	11534979	intron	Drak +	chrX	11538271	intron	Drak +	chrX	11541563	intron	Drak +	chrX_16_11535001	chrX_11535001	w[1118]
2703	chrX	11633360	11633395	chrX	11640489	11640523	297	15	7129	15.5	10.0	12.8	1.1	7163	chrX	11633360	intron	Ptp10D +	chrX	11636942	intron	Ptp10D +	chrX	11640523	intron	Ptp10D +	chrX_15_11635001	chrX_11635001	w[1118]
2704	chrX	11645046	11645081	chrX	11648290	11648325	NOF	12	3244	12.5	10.5	11.5	1.0	3279	chrX	11645046	intron	Ptp10D +	chrX	11646686	intron	Ptp10D +	chrX	11648325	intron	Ptp10D +	chrX_12_11645001	chrX_11645001	w[1118]
2711	chrX	12168080	12168109	chrX	12173597	12173626	I-element	5	5517	8.0	0.0	4.0	1.0	5546	chrX	12168080	intron	Ten-a +	chrX	12170853	intron	Ten-a +	chrX	12173626	intron	Ten-a +	chrX_5_12170001	chrX_12170001	w[1118]
2726	chrX	12930523	12930552	chrX	12937714	12937743	HMS-Beagle	13	7191	13.0	11.5	12.2	1.0	7220	chrX	12930523	intron	fne +	chrX	12934133	intron	fne +	chrX	12937743	intron	fne +	chrX_13_12930001	chrX_12930001	w[1118]
2734	chrX	13401420	13401507	chrX	13401847	13401934	jockey	4	427	0.0	6.0	3.0	1.0	514	chrX	13401420	intergenic	CG1673 +,CG12725 -	chrX	13401677	intergenic	CG12725 -,CG1673 +	chrX	13401934	3` UTR	CG12725 -	chrX_4_13400001	chrX_13400001	w[1118]
2736	chrX	13429388	13429420	chrX	13430612	13430644	jockey	12	1224	8.0	7.5	7.8	1.4	1256	chrX	13429388	intergenic	not near genes	chrX	13430016	intergenic	not near genes	chrX	13430644	intergenic	not near genes	chrX_12_13430001	chrX_13430001	w[1118]
2738	chrX	13463591	13463622	chrX	13469243	13469274	mdg3	7	5652	5.0	6.5	5.8	1.0	5683	chrX	13463591	intron	Neto +	chrX	13466432	intron	Neto +	chrX	13469274	intron	Neto +	chrX_7_13465001	chrX_13465001	w[1118]
2744	chrX	13937920	13937948	chrX	13941266	13941294	I-element	9	3346	11.5	14.0	12.8	0.7	3374	chrX	13937920	intron	mamo -	chrX	13939607	intron	mamo -	chrX	13941294	intron	mamo -	chrX_9_13935001	chrX_13935001	w[1118]
2747	chrX	14030685	14030712	chrX	14035345	14035373	copia	10	4661	14.5	6.5	10.5	0.9	4688	chrX	14030685	intergenic	not near genes	chrX	14033029	intergenic	not near genes	chrX	14035373	intergenic	not near genes	chrX_10_14030001	chrX_14030001	w[1118]
2749	chrX	14104977	14104998	chrX	14114203	14114224	roo	9	9226	8.5	7.0	7.8	1.0	9247	chrX	14104977	intergenic	not near genes	chrX	14109600	intergenic	not near genes	chrX	14114224	5` UTR	CR44657 +	chrX_9_14105001	chrX_14105001	w[1118]
2751	chrX	14157529	14157545	chrX	14163261	14163277	297	4	5732	23.5	7.5	15.5	0.2	5748	chrX	14157529	intergenic	not near genes	chrX	14160403	intergenic	not near genes	chrX	14163277	intergenic	not near genes	chrX_4_14160001	chrX_14160001	w[1118]
2754	chrX	14304015	14304049	chrX	14310308	14310342	17.6	19	6293	6.5	3.5	5.0	3.2	6327	chrX	14304015	intergenic	not near genes	chrX	14307178	intergenic	not near genes	chrX	14310342	intergenic	not near genes	chrX_19_14305001	chrX_14305001	w[1118]
2765	chrX	14416248	14416280	chrX	14421091	14421123	F-element	10	4843	13.0	3.5	8.2	1.1	4875	chrX	14416248	intron	dpr8 +	chrX	14418686	intron	dpr8 +	chrX	14421123	intron	dpr8 +	chrX_10_14415001	chrX_14415001	w[1118]
2770	chrX	14551598	14551614	chrX	14559336	14559352	opus	4	7738	7.0	4.5	5.8	0.6	7754	chrX	14551598	intergenic	not near genes	chrX	14555475	intergenic	not near genes	chrX	14559352	intergenic	not near genes	chrX_4_14555001	chrX_14555001	w[1118]
2773	chrX	14636401	14636438	chrX	14641917	14641954	I-element	6	5516	10.5	11.5	11.0	0.5	5553	chrX	14636401	intron	NetA -	chrX	14639178	intron	NetA -	chrX	14641954	intron	NetA -	chrX_6_14635001	chrX_14635001	w[1118]
2777	chrX	14777993	14778004	chrX	14782865	14782876	Doc	4	4872	7.5	8.5	8.0	0.4	4883	chrX	14777993	intergenic	CG5347 +	chrX	14780434	intergenic	not near genes	chrX	14782876	intergenic	Ag5r2 -	chrX_4_14780001	chrX_14780001	w[1118]
2780	chrX	14818705	14818742	chrX	14823984	14824021	copia	17	5279	15.5	7.0	11.2	1.4	5316	chrX	14818705	intron	rut -	chrX	14821363	intron	rut -	chrX	14824021	intron	rut -	chrX_17_14820001	chrX_14820001	w[1118]
2781	chrX	14936799	14936837	chrX	14946131	14946169	roo	15	9332	18.0	12.0	15.0	0.9	9370	chrX	14936799	intron	pdgy -	chrX	14941484	intron	pdgy -	chrX	14946169	intron	pdgy -	chrX_15_14940001	chrX_14940001	w[1118]
2784	chrX	15034054	15034066	chrX	15041656	15041668	rover	5	7602	16.5	14.5	15.5	0.3	7614	chrX	15034054	intron,3` UTR	hiw -,be +	chrX	15037861	intron,intron	hiw -,be +	chrX	15041668	intron,3` UTR	hiw -,be +	chrX_5_15035001	chrX_15035001	w[1118]
2789	chrX	15273644	15273678	chrX	15274886	15274920	1360	10	1242	13.0	8.0	10.5	0.9	1276	chrX	15273644	intergenic	not near genes	chrX	15274282	intergenic	not near genes	chrX	15274920	intergenic	not near genes	chrX_10_15270001	chrX_15270001	w[1118]
2791	chrX	15326674	15326718	chrX	15326947	15326991	I-element	5	273	0.0	7.5	3.8	1.0	317	chrX	15326674	3` UTR	Top1 +	chrX	15326832	3` UTR	Top1 +	chrX	15326991	3` UTR	Top1 +	chrX_5_15325001	chrX_15325001	w[1118]
2793	chrX	15412993	15413028	chrX	15417370	15417405	Juan	15	4377	12.5	11.0	11.8	1.2	4412	chrX	15412993	intron	Cngl -	chrX	15415199	intron	Cngl -	chrX	15417405	intron	Cngl -	chrX_15_15415001	chrX_15415001	w[1118]
2794	chrX	15421856	15421942	chrX	15423442	15423528	pogo	12	1586	6.0	4.0	5.0	2.0	1672	chrX	15421856	intron	Cngl -	chrX	15422692	intron	Cngl -	chrX	15423528	intron	Cngl -	chrX_12_15420001	chrX_15420001	w[1118]
2806	chrX	16222714	16222756	chrX	16231139	16231181	roo	11	8425	16.5	6.5	11.5	0.9	8467	chrX	16222714	intergenic	not near genes	chrX	16226948	intergenic	not near genes	chrX	16231181	intergenic	not near genes	chrX_11_16225001	chrX_16225001	w[1118]
2809	chrX	16340594	16340659	chrX	16349824	16349889	roo	17	9230	5.5	4.0	4.8	2.9	9295	chrX	16340594	3` UTR	Dsp1 +	chrX	16345242	intergenic	not near genes	chrX	16349889	intergenic	sl +	chrX_17_16345001	chrX_16345001	w[1118]
2812	chrX	16492583	16492613	chrX	16498235	16498265	mdg3	12	5652	13.0	7.5	10.2	1.1	5682	chrX	16492583	intron	para -	chrX	16495424	intron	para -	chrX	16498265	intron	para -	chrX_12_16495001	chrX_16495001	w[1118]
2821	chrX	16935936	16935962	chrX	16936429	16936455	jockey	10	493	16.5	4.5	10.5	0.9	519	chrX	16935936	intron	CG4928 +	chrX	16936196	intron	CG4928 +	chrX	16936455	intron	CG4928 +	chrX_10_16935001	chrX_16935001	w[1118]
2825	chrX	17057872	17057955	chrX	17058188	17058271	pogo	7	316	3.5	9.5	6.5	0.9	399	chrX	17057872	intron	CG45002 -	chrX	17058072	intron	CG45002 -	chrX	17058271	intron	CG45002 -	chrX_7_17055001	chrX_17055001	w[1118]
2828	chrX	17195151	17195171	chrX	17200312	17200332	flea	7	5161	19.5	12.0	15.8	0.4	5181	chrX	17195151	3` UTR	baz +	chrX	17197742	3` UTR	baz +	chrX	17200332	3` UTR	baz +	chrX_7_17195001	chrX_17195001	w[1118]
2837	chrX	17431288	17431326	chrX	17431704	17431742	jockey	13	416	17.5	6.5	12.0	1.0	454	chrX	17431288	intron	CG12994 -	chrX	17431515	intron	CG12994 -	chrX	17431742	intron	CG12994 -	chrX_13_17430001	chrX_17430001	w[1118]
2845	chrX	17792891	17792926	chrX	17796264	17796299	flea	10	3373	17.0	12.5	14.8	0.6	3408	chrX	17792891	intron	OdsH +	chrX	17794595	intron	OdsH +	chrX	17796299	intron	OdsH +	chrX_10_17790001	chrX_17790001	w[1118]
2852	chrX	18194007	18194047	chrX	18194616	18194657	BS	14	610	11.5	9.0	10.2	1.2	650	chrX	18194007	intron	Frq2 +	chrX	18194332	intron	Frq2 +	chrX	18194657	intron	Frq2 +	chrX_14_18190001	chrX_18190001	w[1118]
2856	chrX	18429430	18429470	chrX	18434815	18434856	Transpac	11	5386	7.5	11.0	9.2	1.1	5426	chrX	18429430	intergenic	not near genes	chrX	18432143	intergenic	not near genes	chrX	18434856	intergenic	not near genes	chrX_11_18430001	chrX_18430001	w[1118]
2865	chrX	18754273	18754301	chrX	18758015	18758043	297	8	3742	6.5	10.0	8.2	0.9	3770	chrX	18754273	intergenic	not near genes	chrX	18756158	intergenic	not near genes	chrX	18758043	intergenic	not near genes	chrX_8_18755001	chrX_18755001	w[1118]
2868	chrX	18957019	18957046	chrX	18965757	18965784	roo	11	8738	4.5	11.0	7.8	1.2	8765	chrX	18957019	intron	CG43759 +	chrX	18961402	intron	CG43759 +	chrX	18965784	intron	CG43759 +	chrX_11_18960001	chrX_18960001	w[1118]
2869	chrX	19060347	19060381	chrX	19065206	19065240	Doc	11	4859	12.5	8.0	10.2	1.0	4893	chrX	19060347	intron	CG14190 +	chrX	19062794	intron	CG14190 +	chrX	19065240	intron	CG14190 +	chrX_11_19060001	chrX_19060001	w[1118]
2879	chrX	19136490	19136521	chrX	19143485	19143516	412	5	6995	8.5	9.5	9.0	0.5	7026	chrX	19136490	intergenic	not near genes	chrX	19140003	intergenic	not near genes	chrX	19143516	3` UTR	RhoGAP18B -	chrX_5_19140001	chrX_19140001	w[1118]
2884	chrX	19356931	19356963	chrX	19358447	19358497	NOF	5	1520	12.0	0.0	6.0	0.7	1566	chrX	19356931	intron	kek5 +	chrX	19357714	intron	kek5 +	chrX	19358497	intron	kek5 +	chrX_5_19355001	chrX_19355001	w[1118]
2885	chrX	19380094	19380133	chrX	19380410	19380449	pogo	14	316	12.5	10.5	11.5	1.1	355	chrX	19380094	intron	kek5 +	chrX	19380272	intron	kek5 +	chrX	19380449	intron	kek5 +	chrX_14_19380001	chrX_19380001	w[1118]
2889	chrX	19472066	19472100	chrX	19472711	19472745	jockey	14	645	7.0	9.0	8.0	1.6	679	chrX	19472066	intergenic	kek5 +	chrX	19472406	intergenic	kek5 +	chrX	19472745	intergenic	not near genes	chrX_14_19470001	chrX_19470001	w[1118]
2893	chrX	19797295	19797321	chrX	19804683	19804709	Stalker4	9	7388	12.5	7.0	9.8	0.8	7414	chrX	19797295	intergenic	not near genes	chrX	19801002	intergenic	not near genes	chrX	19804709	intergenic	not near genes	chrX_9_19800001	chrX_19800001	w[1118]
2912	chrX	20377258	20377277	chrX	20378800	20378819	hobo	9	1542	16.5	7.5	12.0	0.7	1561	chrX	20377258	intergenic	not near genes	chrX	20378038	intergenic	not near genes	chrX	20378819	intergenic	not near genes	chrX_9_20375001	chrX_20375001	w[1118]
2927	chrX	20836676	20836700	chrX	20844353	20844377	roo	9	7677	7.5	6.0	6.8	1.2	7701	chrX	20836676	intron	shakB -	chrX	20840526	intron	shakB -	chrX	20844377	intron	shakB -	chrX_9_20840001	chrX_20840001	w[1118]
2930	chrX	20940659	20940749	chrX	20942203	20942295	hobo	6	1544	7.0	4.0	5.5	0.9	1636	chrX	20940659	intergenic	not near genes	chrX	20941477	intergenic	not near genes	chrX	20942295	intergenic	not near genes	chrX_6_20940001	chrX_20940001	w[1118]
2931	chrX	20956908	20956947	chrX	20962427	20962466	I-element	12	5519	5.0	6.5	5.8	1.8	5558	chrX	20956908	intergenic	not near genes	chrX	20959687	intergenic	not near genes	chrX	20962466	intergenic	Ser6 -	chrX_12_20955001	chrX_20955001	w[1118]
2936	chrX	21061790	21061832	chrX	21062354	21062397	roo	11	564	11.0	8.5	9.8	1.0	607	chrX	21061790	intron	bves +	chrX	21062094	intron	bves +	chrX	21062397	intron,3` UTR	bves +,CG32512 -	chrX_11_21060001	chrX_21060001	w[1118]
2940	chrX	21086071	21086108	chrX	21087175	21087212	jockey	11	1104	12.0	10.5	11.2	0.9	1141	chrX	21086071	intergenic	not near genes	chrX	21086642	intergenic	not near genes	chrX	21087212	intergenic	not near genes	chrX_11_21085001	chrX_21085001	w[1118]
2950	chrX	22996249	22996285	chrX	23003558	23003594	roo	23	7309	17.5	8.5	13.0	1.6	7345	chrX	22996249	intron,intron	stnA -,stnB -	chrX	22999922	intron,intron	stnA -,stnB -	chrX	23003594	intron,intron	stnA -,stnB -	chrX_23_22995001	chrX_22995001	w[1118]