SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	686917	686951	chr2L	695957	695991	roo	9	9040	4.5	3.5	4.0	1.8	9074	chr2L	686917	intron	ds -	chr2L	691454	intron	ds -	chr2L	695991	intron	ds -	chr2L_9_690001	chr2L_690001	Samar-Dw1
3	chr2L	1301752	1301781	chr2L	1302291	1302320	gypsy	11	539	2.0	3.0	2.5	3.1	568	chr2L	1301752	intergenic	not near genes	chr2L	1302036	intergenic	not near genes	chr2L	1302320	intergenic	not near genes	chr2L_11_1300001	chr2L_1300001	Samar-Dw1
4	chr2L	1711358	1711388	chr2L	1711682	1711712	mdg3	20	324	3.5	3.0	3.2	4.8	354	chr2L	1711358	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711535	3` UTR	frtz -	chr2L	1711712	3` UTR	frtz -	chr2L_20_1710001	chr2L_1710001	Samar-Dw1
6	chr2L	2100390	2100405	chr2L	2109541	2109556	roo	11	9151	9.5	13.0	11.2	0.9	9166	chr2L	2100390	intron	dpr3 -	chr2L	2104973	intron	dpr3 -	chr2L	2109556	intron	dpr3 -	chr2L_11_2100001	chr2L_2100001	Samar-Dw1
7	chr2L	2661196	2661233	chr2L	2663034	2663071	I-element	19	1838	2.0	4.0	3.0	4.8	1875	chr2L	2661196	intergenic	not near genes	chr2L	2662134	intergenic	not near genes	chr2L	2663071	intergenic	not near genes	chr2L_19_2660001	chr2L_2660001	Samar-Dw1
10	chr2L	3073033	3073063	chr2L	3078236	3078266	copia	10	5203	3.5	7.0	5.2	1.6	5233	chr2L	3073033	intron	toc -	chr2L	3075650	intron	toc -	chr2L	3078266	intron	toc -	chr2L_10_3075001	chr2L_3075001	Samar-Dw1
13	chr2L	3202744	3202772	chr2L	3210173	3210201	mdg1	7	7429	4.0	5.0	4.5	1.3	7457	chr2L	3202744	intergenic	not near genes	chr2L	3206472	intergenic	not near genes	chr2L	3210201	intergenic	CR45336 +	chr2L_7_3205001	chr2L_3205001	Samar-Dw1
14	chr2L	3251504	3251527	chr2L	3259069	3259092	springer	4	7565	1.5	2.5	2.0	1.3	7588	chr2L	3251504	intergenic	not near genes	chr2L	3255298	intergenic	not near genes	chr2L	3259092	intergenic	not near genes	chr2L_4_3255001	chr2L_3255001	Samar-Dw1
19	chr2L	4601710	4601726	chr2L	4609151	4609167	mdg1	6	7441	1.5	4.5	3.0	1.5	7457	chr2L	4601710	intron	dp -	chr2L	4605438	intron	dp -	chr2L	4609167	intron	dp -	chr2L_6_4605001	chr2L_4605001	Samar-Dw1
35	chr2L	5827722	5827738	chr2L	5836730	5836746	roo	4	9008	2.0	4.0	3.0	1.0	9024	chr2L	5827722	intron	TrissinR +	chr2L	5832234	intron	TrissinR +	chr2L	5836746	intron	TrissinR +	chr2L_4_5830001	chr2L_5830001	Samar-Dw1
46	chr2L	6363148	6363181	chr2L	6366070	6366103	Burdock	7	2922	1.5	0.5	1.0	3.5	2955	chr2L	6363148	intergenic	not near genes	chr2L	6364626	intergenic	not near genes	chr2L	6366103	intergenic	not near genes	chr2L_7_6360001	chr2L_6360001	Samar-Dw1
47	chr2L	6426854	6426887	chr2L	6445114	6445147	roo	14	18260	5.5	7.0	6.2	1.9	18293	chr2L	6426854	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445147	exon	CG9527 -	chr2L_14_6435001	chr2L_6435001	Samar-Dw1
52	chr2L	6876772	6876807	chr2L	6882963	6882998	diver	12	6190	2.5	2.5	2.5	3.4	6226	chr2L	6876772	intron	Nlg2 +	chr2L	6879885	intron	Nlg2 +	chr2L	6882998	intron	Nlg2 +	chr2L_12_6875001	chr2L_6875001	Samar-Dw1
58	chr2L	7343325	7343358	chr2L	7350441	7350474	roo	9	7116	1.0	2.5	1.8	3.2	7149	chr2L	7343325	intron	Wnt6 +	chr2L	7346900	intron	Wnt6 +	chr2L	7350474	intron	Wnt6 +	chr2L_9_7345001	chr2L_7345001	Samar-Dw1
69	chr2L	7959040	7959061	chr2L	7960451	7960472	pogo	10	1411	1.5	0.0	0.8	5.6	1432	chr2L	7959040	intron	Snoo -	chr2L	7959756	intron	Snoo -	chr2L	7960472	intron	Snoo -	chr2L_10_7955001	chr2L_7955001	Samar-Dw1
80	chr2L	8452418	8452452	chr2L	8461589	8461623	roo	6	9171	4.0	3.0	3.5	1.3	9205	chr2L	8452418	intron	fu12 -	chr2L	8457020	intron	fu12 -	chr2L	8461623	intron	fu12 -	chr2L_6_8455001	chr2L_8455001	Samar-Dw1
99	chr2L	9393496	9393531	chr2L	9396463	9396498	jockey	10	2967	1.0	2.5	1.8	3.6	3002	chr2L	9393496	intron	Shawl -	chr2L	9394997	intron	Shawl -	chr2L	9396498	intron	Shawl -	chr2L_10_9390001	chr2L_9390001	Samar-Dw1
106	chr2L	9973724	9973757	chr2L	9980843	9980876	HMS-Beagle	9	7119	1.0	2.0	1.5	3.6	7152	chr2L	9973724	intergenic	not near genes	chr2L	9977300	intergenic	not near genes	chr2L	9980876	intergenic	not near genes	chr2L_9_9975001	chr2L_9975001	Samar-Dw1
110	chr2L	10156332	10156352	chr2L	10163802	10163822	blood	6	7470	2.5	2.5	2.5	1.7	7490	chr2L	10156332	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160077	intron	CG44153 -	chr2L	10163822	intron	CG44153 -	chr2L_6_10160001	chr2L_10160001	Samar-Dw1
119	chr2L	10862852	10862876	chr2L	10864466	10864490	Rt1c	8	1614	4.0	5.5	4.8	1.4	1638	chr2L	10862852	3` UTR	CR43807 -	chr2L	10863671	intron	CR43807 -	chr2L	10864490	3` UTR	CR43807 -	chr2L_8_10860001	chr2L_10860001	Samar-Dw1
123	chr2L	10946950	10946975	chr2L	10956165	10956190	roo	11	9215	7.5	8.0	7.8	1.2	9240	chr2L	10946950	intron	dpr2 -	chr2L	10951570	intron	dpr2 -	chr2L	10956190	intron	dpr2 -	chr2L_11_10950001	chr2L_10950001	Samar-Dw1
131	chr2L	12558318	12558353	chr2L	12565447	12565482	HMS-Beagle	8	7128	0.5	1.0	0.8	4.4	7164	chr2L	12558318	intergenic	not near genes	chr2L	12561900	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_8_12560001	chr2L_12560001	Samar-Dw1
132	chr2L	12728921	12728935	chr2L	12729161	12729175	pogo	5	240	3.5	2.5	3.0	1.2	254	chr2L	12728921	intron	MRP +	chr2L	12729048	intron	MRP +	chr2L	12729175	intron	MRP +	chr2L_5_12725001	chr2L_12725001	Samar-Dw1
133	chr2L	12731057	12731086	chr2L	12735824	12735853	F-element	5	4767	5.5	2.0	3.8	1.0	4796	chr2L	12731057	intron	MRP +	chr2L	12733455	intron	MRP +	chr2L	12735853	intron	MRP +	chr2L_5_12730001	chr2L_12730001	Samar-Dw1
135	chr2L	12739173	12739204	chr2L	12743954	12743985	Doc	9	4781	2.5	4.5	3.5	2.0	4812	chr2L	12739173	exon	MRP +	chr2L	12741579	intron	MRP +	chr2L	12743985	exon	MRP +	chr2L_9_12740001	chr2L_12740001	Samar-Dw1
136	chr2L	12791603	12791634	chr2L	12795278	12795309	F-element	11	3675	5.5	3.0	4.2	2.1	3706	chr2L	12791603	intergenic	not near genes	chr2L	12793456	intergenic	not near genes	chr2L	12795309	intergenic	not near genes	chr2L_11_12790001	chr2L_12790001	Samar-Dw1
139	chr2L	12861694	12861726	chr2L	12863161	12863193	hobo	5	1467	0.0	0.5	0.2	4.2	1499	chr2L	12861694	intergenic	not near genes	chr2L	12862444	intergenic	not near genes	chr2L	12863193	intergenic	not near genes	chr2L_5_12860001	chr2L_12860001	Samar-Dw1
141	chr2L	12894021	12894054	chr2L	12895488	12895521	hobo	16	1467	7.0	3.0	5.0	2.7	1500	chr2L	12894021	intergenic	not near genes	chr2L	12894771	intergenic	not near genes	chr2L	12895521	intergenic	not near genes	chr2L_16_12890001	chr2L_12890001	Samar-Dw1
144	chr2L	12933850	12933881	chr2L	12941317	12941348	blood	17	7467	2.5	6.0	4.2	3.3	7498	chr2L	12933850	intergenic	not near genes	chr2L	12937599	intergenic	not near genes	chr2L	12941348	intergenic	not near genes	chr2L_17_12935001	chr2L_12935001	Samar-Dw1
151	chr2L	13405646	13405678	chr2L	13410443	13410475	Doc	12	4797	6.0	4.5	5.2	1.9	4829	chr2L	13405646	exon	CG7110 +	chr2L	13408060	intron	CG7110 +	chr2L	13410475	intron	CG7110 +	chr2L_12_13405001	chr2L_13405001	Samar-Dw1
153	chr2L	13449461	13449496	chr2L	13456897	13456932	Quasimodo	7	7436	1.0	1.0	1.0	3.5	7471	chr2L	13449461	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453196	intron	CG42784 +	chr2L	13456932	intron	CG42784 +	chr2L_7_13450001	chr2L_13450001	Samar-Dw1
154	chr2L	13481450	13481476	chr2L	13482057	13482081	jockey	13	607	3.0	7.0	5.0	2.2	631	chr2L	13481450	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482081	intron	CG42784 +	chr2L_13_13480001	chr2L_13480001	Samar-Dw1
156	chr2L	13761803	13761835	chr2L	13762914	13762946	Doc	9	1111	1.5	3.0	2.2	2.8	1143	chr2L	13761803	intron	TM9SF4 +	chr2L	13762374	intron	TM9SF4 +	chr2L	13762946	intron	TM9SF4 +	chr2L_9_13760001	chr2L_13760001	Samar-Dw1
159	chr2L	13853085	13853117	chr2L	13862235	13862267	roo	9	9150	4.5	3.0	3.8	1.9	9182	chr2L	13853085	intron	CenG1A +	chr2L	13857676	intron	CenG1A +	chr2L	13862267	intron	CenG1A +	chr2L_9_13855001	chr2L_13855001	Samar-Dw1
169	chr2L	14642574	14642599	chr2L	14651737	14651762	roo	6	9163	1.5	4.0	2.8	1.6	9188	chr2L	14642574	intron	osp -	chr2L	14647168	intron	osp -	chr2L	14651762	intron	osp -	chr2L_6_14645001	chr2L_14645001	Samar-Dw1
171	chr2L	14803886	14803912	chr2L	14809089	14809115	copia	10	5203	0.0	6.0	3.0	2.5	5229	chr2L	14803886	intergenic	not near genes	chr2L	14806500	intergenic	not near genes	chr2L	14809115	intergenic	not near genes	chr2L_10_14805001	chr2L_14805001	Samar-Dw1
176	chr2L	14889952	14889980	chr2L	14890377	14890405	jockey	8	425	2.0	1.5	1.8	2.9	453	chr2L	14889952	intergenic	not near genes	chr2L	14890178	intergenic	not near genes	chr2L	14890405	intergenic	not near genes	chr2L_8_14890001	chr2L_14890001	Samar-Dw1
178	chr2L	14984385	14984403	chr2L	14991987	14992005	opus	5	7602	0.5	1.5	1.0	2.5	7620	chr2L	14984385	intron	mol -	chr2L	14988195	intron	mol -	chr2L	14992005	intron	mol -	chr2L_5_14985001	chr2L_14985001	Samar-Dw1
195	chr2L	15956025	15956057	chr2L	15957492	15957524	hobo	17	1467	3.5	3.5	3.5	3.8	1499	chr2L	15956025	intron	beat-Ib -	chr2L	15956774	intron	beat-Ib -	chr2L	15957524	intron	beat-Ib -	chr2L_17_15955001	chr2L_15955001	Samar-Dw1
196	chr2L	16071771	16071771	chr2L	16217659	16217660	copia	16	145889	17.5	12.5	15.0	1.0	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_16_16140001	chr2L_16140001	Samar-Dw1
197	chr2L	16153734	16153764	chr2L	16160788	16160818	297	11	7054	3.5	7.0	5.2	1.8	7084	chr2L	16153734	intergenic	not near genes	chr2L	16157276	intergenic	not near genes	chr2L	16160818	intergenic	not near genes	chr2L_11_16155001	chr2L_16155001	Samar-Dw1
200	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	8	145889	17.5	12.5	15.0	0.5	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	Samar-Dw1
201	chr2L	16280255	16280286	chr2L	16281426	16281457	1360	14	1171	2.0	5.5	3.8	2.9	1202	chr2L	16280255	intron	crp -	chr2L	16280856	intron	crp -	chr2L	16281457	intron	crp -	chr2L_14_16280001	chr2L_16280001	Samar-Dw1
208	chr2L	16958101	16958126	chr2L	16962889	16962914	Doc	4	4788	1.5	2.5	2.0	1.3	4813	chr2L	16958101	intergenic	not near genes	chr2L	16960508	intergenic	not near genes	chr2L	16962914	intergenic	not near genes	chr2L_4_16960001	chr2L_16960001	Samar-Dw1
212	chr2L	17167570	17167591	chr2L	17167811	17167832	pogo	5	241	1.5	1.5	1.5	2.0	262	chr2L	17167570	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167701	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167832	intron,intron	CG34106 +,beat-IIIa +	chr2L_5_17165001	chr2L_17165001	Samar-Dw1
213	chr2L	17273203	17273224	chr2L	17277986	17278007	F-element	6	4783	0.5	3.5	2.0	2.0	4804	chr2L	17273203	intergenic	not near genes	chr2L	17275605	intergenic	not near genes	chr2L	17278007	intergenic	not near genes	chr2L_6_17275001	chr2L_17275001	Samar-Dw1
225	chr2L	17727873	17727882	chr2L	17729340	17729351	hobo	6	1468	5.0	6.5	5.8	0.9	1478	chr2L	17727873	intron	CadN -	chr2L	17728612	intron	CadN -	chr2L	17729351	intron	CadN -	chr2L_6_17725001	chr2L_17725001	Samar-Dw1
227	chr2L	17819924	17819948	chr2L	17825127	17825151	copia	6	5203	3.0	5.5	4.2	1.2	5227	chr2L	17819924	intron	CadN2 -	chr2L	17822538	intron	CadN2 -	chr2L	17825151	intron	CadN2 -	chr2L_6_17820001	chr2L_17820001	Samar-Dw1
230	chr2L	17911964	17911987	chr2L	17914142	17914165	pogo	5	2178	3.0	5.5	4.2	1.0	2201	chr2L	17911964	intergenic	not near genes	chr2L	17913064	intergenic	not near genes	chr2L	17914165	intergenic	CG43271 -	chr2L_5_17910001	chr2L_17910001	Samar-Dw1
237	chr2L	18051873	18051909	chr2L	18061020	18061056	roo	7	9147	4.0	3.0	3.5	1.6	9183	chr2L	18051873	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061056	intron	rdo +	chr2L_7_18055001	chr2L_18055001	Samar-Dw1
245	chr2L	18408026	18408049	chr2L	18412810	18412833	Doc	5	4784	2.0	2.5	2.2	1.6	4807	chr2L	18408026	intergenic	not near genes	chr2L	18410430	intergenic	not near genes	chr2L	18412833	intergenic	not near genes	chr2L_5_18410001	chr2L_18410001	Samar-Dw1
254	chr2L	19345013	19345048	chr2L	19357222	19357257	blood	9	12209	2.0	1.0	1.5	3.6	12244	chr2L	19345013	intron	dnt -	chr2L	19351135	intron	dnt -	chr2L	19357257	intron	dnt -	chr2L_9_19350001	chr2L_19350001	Samar-Dw1
266	chr2L	19620094	19620131	chr2L	19621083	19621120	jockey	19	989	3.5	7.0	5.2	3.1	1026	chr2L	19620094	intron	Lar +	chr2L	19620607	intron	Lar +	chr2L	19621120	intron	Lar +	chr2L_19_19620001	chr2L_19620001	Samar-Dw1
267	chr2L	19652576	19652597	chr2L	19674012	19674033	opus	10	21436	1.5	3.0	2.2	3.1	21457	chr2L	19652576	intron	Lar +	chr2L	19663304	intron	Lar +	chr2L	19674033	intron	Lar +	chr2L_10_19660001	chr2L_19660001	Samar-Dw1
268	chr2L	19703537	19703569	chr2L	19712673	19712705	roo	20	9136	2.5	5.0	3.8	4.2	9168	chr2L	19703537	intron	Lar +	chr2L	19708121	intron	Lar +	chr2L	19712705	intron	Lar +	chr2L_20_19705001	chr2L_19705001	Samar-Dw1
269	chr2L	19762817	19762837	chr2L	19763059	19763079	pogo	7	242	3.0	4.5	3.8	1.5	262	chr2L	19762817	intron	fbp -	chr2L	19762948	intron	fbp -	chr2L	19763079	intron	fbp -	chr2L_7_19760001	chr2L_19760001	Samar-Dw1
272	chr2L	20005876	20005895	chr2L	20010952	20010971	flea	4	5076	4.5	4.0	4.2	0.8	5095	chr2L	20005876	intron	CG43861 -	chr2L	20008424	intron	CG43861 -	chr2L	20010971	intron	CG43861 -	chr2L_4_20005001	chr2L_20005001	Samar-Dw1
275	chr2L	20272116	20272129	chr2L	20282827	20282840	copia	5	10711	7.5	6.5	7.0	0.6	10724	chr2L	20272116	intergenic	not near genes	chr2L	20277478	intergenic	not near genes	chr2L	20282840	intergenic	not near genes	chr2L_5_20275001	chr2L_20275001	Samar-Dw1
279	chr2L	20372227	20372246	chr2L	20372468	20372482	pogo	5	240	1.5	2.0	1.8	1.8	255	chr2L	20372227	intergenic	Ugt37a1 -	chr2L	20372354	intergenic	Ugt37a1 -	chr2L	20372482	exon	Ugt37a1 -	chr2L_5_20370001	chr2L_20370001	Samar-Dw1
281	chr2L	20568662	20568686	chr2L	20569052	20569076	X-element	6	390	3.5	2.5	3.0	1.5	414	chr2L	20568662	intron	CR45347 +	chr2L	20568869	intron	CR45347 +	chr2L	20569076	intron	CR45347 +	chr2L_6_20565001	chr2L_20565001	Samar-Dw1
282	chr2L	20576223	20576250	chr2L	20583691	20583718	blood	5	7468	3.5	3.5	3.5	1.1	7495	chr2L	20576223	intergenic	not near genes	chr2L	20579970	intergenic	not near genes	chr2L	20583718	3` UTR	CR44909 -	chr2L_5_20575001	chr2L_20575001	Samar-Dw1
288	chr2L	20901470	20901486	chr2L	20902634	20902650	1360	6	1164	2.0	2.0	2.0	2.0	1180	chr2L	20901470	intron,intron	CG43739 -,sky -	chr2L	20902060	intron,intron	CG43739 -,sky -	chr2L	20902650	intron,intron	CG43739 -,sky -	chr2L_6_20900001	chr2L_20900001	Samar-Dw1
292	chr2L	20976652	20976678	chr2L	20981467	20981493	X-element	5	4815	1.5	4.0	2.8	1.3	4841	chr2L	20976652	intron	CG42238 -	chr2L	20979072	intron	CG42238 -	chr2L	20981493	intron	CG42238 -	chr2L_5_20975001	chr2L_20975001	Samar-Dw1
294	chr2L	21020273	21020309	chr2L	21023950	21023986	NOF	8	3677	0.5	1.5	1.0	4.0	3713	chr2L	21020273	intron	CG42238 -	chr2L	21022130	intron	CG42238 -	chr2L	21023986	intron	CG42238 -	chr2L_8_21020001	chr2L_21020001	Samar-Dw1
295	chr2L	21041134	21041164	chr2L	21049395	21049425	Tirant	7	8257	2.5	4.0	3.2	1.7	8291	chr2L	21041134	intron	CG42238 -	chr2L	21045280	intron	CG42238 -	chr2L	21049425	intron	CG42238 -	chr2L_7_21045001	chr2L_21045001	Samar-Dw1
301	chr2L	21981682	21981715	chr2L	21990847	21990880	roo	12	9165	6.0	5.5	5.8	1.8	9198	chr2L	21981682	exon	CG2528 -	chr2L	21986281	intron	CG2528 -	chr2L	21990880	exon	CG2528 -	chr2L_12_21985001	chr2L_21985001	Samar-Dw1
305	chr2R	529323	529357	chr2R	537948	537982	Max-element	13	8625	4.5	5.0	4.8	2.2	8659	chr2R	529323	intron	CG40378 +	chr2R	533652	intron	CG40378 +	chr2R	537982	intron	CG40378 +	chr2R_13_530001	chr2R_530001	Samar-Dw1
306	chr2R	1082366	1082384	chr2R	1087142	1087160	Doc	15	4776	9.0	14.5	11.8	1.2	4794	chr2R	1082366	intron	rl +	chr2R	1084763	intron	rl +	chr2R	1087160	intron	rl +	chr2R_15_1080001	chr2R_1080001	Samar-Dw1
307	chr2R	2498982	2499015	chr2R	2508129	2508162	roo	7	9147	1.5	2.0	1.8	2.5	9180	chr2R	2498982	intron	MFS17 -	chr2R	2503572	intron	MFS17 -	chr2R	2508162	intron	MFS17 -	chr2R_7_2500001	chr2R_2500001	Samar-Dw1
309	chr2R	2591547	2591552	chr2R	2594223	2594228	roo	4	2676	15.5	16.0	15.8	0.2	2681	chr2R	2591547	intergenic	not near genes	chr2R	2592888	intergenic	not near genes	chr2R	2594228	intergenic	not near genes	chr2R_4_2590001	chr2R_2590001	Samar-Dw1
312	chr2R	4622950	4622983	chr2R	4624109	4624142	1360	11	1159	3.0	3.0	3.0	2.8	1192	chr2R	4622950	intergenic	CR44101 -	chr2R	4623546	intergenic	not near genes	chr2R	4624142	intergenic	not near genes	chr2R_11_4620001	chr2R_4620001	Samar-Dw1
320	chr2R	5417996	5418024	chr2R	5420628	5420656	Burdock	10	2632	1.0	1.5	1.2	4.5	2660	chr2R	5417996	intron	laccase2 +	chr2R	5419326	intron	laccase2 +	chr2R	5420656	intron	laccase2 +	chr2R_10_5415001	chr2R_5415001	Samar-Dw1
325	chr2R	5543211	5543217	chr2R	5547295	5547301	invader1	4	4084	0.0	1.0	0.5	2.7	4090	chr2R	5543211	intron	CG30438 +	chr2R	5545256	intron	CG30438 +	chr2R	5547301	intron	CG30438 +	chr2R_4_5545001	chr2R_5545001	Samar-Dw1
330	chr2R	5869294	5869299	chr2R	5874378	5874383	flea	4	5084	0.0	10.0	5.0	0.7	5089	chr2R	5869294	intergenic	not near genes	chr2R	5871838	intergenic	not near genes	chr2R	5874383	intergenic	not near genes	chr2R_4_5870001	chr2R_5870001	Samar-Dw1
332	chr2R	5902162	5902186	chr2R	5909721	5909745	17.6	4	7559	2.5	0.5	1.5	1.6	7583	chr2R	5902162	intron	CG43366 +	chr2R	5905954	intron	CG43366 +	chr2R	5909745	intron	CG43366 +	chr2R_4_5905001	chr2R_5905001	Samar-Dw1
333	chr2R	6096715	6096751	chr2R	6101913	6101949	BS	26	5198	4.5	6.5	5.5	4.0	5234	chr2R	6096715	intron	EcR -	chr2R	6099332	intron	EcR -	chr2R	6101949	intron	EcR -	chr2R_26_6095001	chr2R_6095001	Samar-Dw1
336	chr2R	6579780	6579803	chr2R	6584866	6584889	flea	8	5086	2.5	1.5	2.0	2.7	5109	chr2R	6579780	intron	jing +	chr2R	6582334	intron	jing +	chr2R	6584889	intron	jing +	chr2R_8_6580001	chr2R_6580001	Samar-Dw1
345	chr2R	7139944	7139956	chr2R	7141436	7141448	hopper2	7	1492	1.5	8.5	5.0	1.2	1504	chr2R	7139944	intergenic	not near genes	chr2R	7140696	intergenic	not near genes	chr2R	7141448	intergenic	not near genes	chr2R_7_7140001	chr2R_7140001	Samar-Dw1
348	chr2R	7196567	7196591	chr2R	7201342	7201366	F-element	4	4775	3.0	1.0	2.0	1.3	4799	chr2R	7196567	intron	pk +	chr2R	7198966	intron	pk +	chr2R	7201366	intron	pk +	chr2R_4_7195001	chr2R_7195001	Samar-Dw1
350	chr2R	7235815	7235851	chr2R	7240907	7240943	jockey	19	5092	5.5	4.5	5.0	3.2	5128	chr2R	7235815	intergenic	not near genes	chr2R	7238379	intergenic	not near genes	chr2R	7240943	intergenic	not near genes	chr2R_19_7235001	chr2R_7235001	Samar-Dw1
357	chr2R	7608414	7608436	chr2R	7613617	7613639	I-element	8	5203	3.5	4.5	4.0	1.6	5225	chr2R	7608414	intron	CG1358 -	chr2R	7611026	intron	CG1358 -	chr2R	7613639	intron	CG1358 -	chr2R_8_7610001	chr2R_7610001	Samar-Dw1
358	chr2R	7869192	7869213	chr2R	7873978	7873999	Doc	9	4786	1.5	3.5	2.5	2.6	4807	chr2R	7869192	intron	Dgk -	chr2R	7871596	intron	Dgk -	chr2R	7873999	intron	Dgk -	chr2R_9_7870001	chr2R_7870001	Samar-Dw1
365	chr2R	8330862	8330892	chr2R	8331348	8331378	roo	6	486	2.5	4.5	3.5	1.3	516	chr2R	8330862	intron	pdm3 +	chr2R	8331120	intron	pdm3 +	chr2R	8331378	intron	pdm3 +	chr2R_6_8330001	chr2R_8330001	Samar-Dw1
368	chr2R	8398211	8398243	chr2R	8402992	8403024	Doc	10	4781	4.5	4.5	4.5	1.8	4813	chr2R	8398211	intron	CG2121 -	chr2R	8400618	intron	CG2121 -	chr2R	8403024	intron	CG2121 -	chr2R_10_8400001	chr2R_8400001	Samar-Dw1
373	chr2R	8566030	8566067	chr2R	8566982	8567013	1360	5	948	3.5	0.0	1.8	1.8	983	chr2R	8566030	5` UTR	Cyp6a14 -	chr2R	8566522	5` UTR	Cyp6a14 -	chr2R	8567013	5` UTR	Cyp6a14 -	chr2R_5_8565001	chr2R_8565001	Samar-Dw1
376	chr2R	8722764	8722792	chr2R	8723005	8723033	pogo	15	241	5.0	6.5	5.8	2.2	269	chr2R	8722764	intron	CG14767 -	chr2R	8722898	intron	CG14767 -	chr2R	8723033	intron	CG14767 -	chr2R_15_8720001	chr2R_8720001	Samar-Dw1
377	chr2R	8777926	8777946	chr2R	8784130	8784150	diver	6	6204	1.5	2.5	2.0	2.0	6224	chr2R	8777926	intergenic	not near genes	chr2R	8781038	intergenic	not near genes	chr2R	8784150	intergenic	not near genes	chr2R_6_8780001	chr2R_8780001	Samar-Dw1
383	chr2R	9151302	9151332	chr2R	9157772	9157802	Burdock	8	6470	1.0	2.5	1.8	2.9	6500	chr2R	9151302	exon	CG30345 +	chr2R	9154552	intergenic	not near genes	chr2R	9157802	intergenic	CG8008 -	chr2R_8_9150001	chr2R_9150001	Samar-Dw1
384	chr2R	9212693	9212722	chr2R	9213179	9213208	roo	13	486	5.0	5.5	5.2	2.1	515	chr2R	9212693	intergenic	CR45309 +	chr2R	9212950	intergenic	CR45309 +	chr2R	9213208	5` UTR	CR45309 +	chr2R_13_9210001	chr2R_9210001	Samar-Dw1
389	chr2R	9480078	9480099	chr2R	9490609	9490630	roo	6	10531	1.5	2.5	2.0	2.0	10552	chr2R	9480078	intergenic	not near genes	chr2R	9485354	intergenic	not near genes	chr2R	9490630	intergenic	not near genes	chr2R_6_9485001	chr2R_9485001	Samar-Dw1
393	chr2R	9871044	9871074	chr2R	9871530	9871560	roo	11	486	3.0	4.0	3.5	2.4	516	chr2R	9871044	intron	cbx -	chr2R	9871302	intron	cbx -	chr2R	9871560	intron,5` UTR	cbx -,CG18446 +	chr2R_11_9870001	chr2R_9870001	Samar-Dw1
395	chr2R	9945435	9945471	chr2R	9945631	9945667	BS	12	196	3.0	3.0	3.0	3.0	232	chr2R	9945435	intron	Mef2 -	chr2R	9945551	intron	Mef2 -	chr2R	9945667	intron	Mef2 -	chr2R_12_9945001	chr2R_9945001	Samar-Dw1
399	chr2R	10005847	10005884	chr2R	10007012	10007049	1360	12	1165	4.0	1.5	2.8	3.2	1202	chr2R	10005847	intron	Pka-R2 -	chr2R	10006448	intron	Pka-R2 -	chr2R	10007049	intron	Pka-R2 -	chr2R_12_10005001	chr2R_10005001	Samar-Dw1
410	chr2R	10585574	10585589	chr2R	10594157	10594172	Tirant	8	8583	2.0	4.0	3.0	2.0	8598	chr2R	10585574	intron	psq +	chr2R	10589873	intron	psq +	chr2R	10594172	intron	psq +	chr2R_8_10585001	chr2R_10585001	Samar-Dw1
419	chr2R	10948032	10948062	chr2R	10955583	10955613	17.6	14	7551	1.0	5.0	3.0	3.5	7581	chr2R	10948032	intergenic	not near genes	chr2R	10951822	intergenic	not near genes	chr2R	10955613	intergenic	not near genes	chr2R_14_10950001	chr2R_10950001	Samar-Dw1
422	chr2R	11009812	11009848	chr2R	11018986	11019022	roo	11	9174	2.0	3.5	2.8	2.9	9210	chr2R	11009812	intron	luna -	chr2R	11014417	intron	luna -	chr2R	11019022	intron	luna -	chr2R_11_11010001	chr2R_11010001	Samar-Dw1
423	chr2R	11019877	11019908	chr2R	11024943	11024974	jockey	5	5066	3.5	2.5	3.0	1.2	5097	chr2R	11019877	intron	luna -	chr2R	11022426	intron	luna -	chr2R	11024974	intron	luna -	chr2R_5_11020001	chr2R_11020001	Samar-Dw1
426	chr2R	11207821	11207845	chr2R	11208014	11208038	BS	5	193	2.5	2.5	2.5	1.4	217	chr2R	11207821	intron	shn +	chr2R	11207930	intron	shn +	chr2R	11208038	intron	shn +	chr2R_5_11205001	chr2R_11205001	Samar-Dw1
427	chr2R	11297621	11297643	chr2R	11301942	11301964	flea	9	4321	3.0	2.5	2.8	2.4	4343	chr2R	11297621	intergenic	CG42336 -	chr2R	11299792	intergenic	not near genes	chr2R	11301964	5` UTR	CG7741 +	chr2R_9_11295001	chr2R_11295001	Samar-Dw1
430	chr2R	11415526	11415551	chr2R	11418675	11418700	opus	8	3149	5.5	4.5	5.0	1.3	3174	chr2R	11415526	intron	Drip -	chr2R	11417113	intron	Drip -	chr2R	11418700	intron	Drip -	chr2R_8_11415001	chr2R_11415001	Samar-Dw1
431	chr2R	11472654	11472678	chr2R	11473851	11473875	pogo	12	1197	5.0	6.5	5.8	1.8	1221	chr2R	11472654	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473875	intergenic	not near genes	chr2R_12_11470001	chr2R_11470001	Samar-Dw1
446	chr2R	12481150	12481170	chr2R	12482954	12482974	roo	9	1804	4.5	6.0	5.2	1.5	1824	chr2R	12481150	exon	Dh44-R2 +	chr2R	12482062	intron	Dh44-R2 +	chr2R	12482974	intron	Dh44-R2 +	chr2R_9_12480001	chr2R_12480001	Samar-Dw1
447	chr2R	12501691	12501724	chr2R	12503853	12503886	Rt1c	14	2162	2.0	4.0	3.0	3.5	2195	chr2R	12501691	intron	fdl -	chr2R	12502788	intron	fdl -	chr2R	12503886	intron	fdl -	chr2R_14_12500001	chr2R_12500001	Samar-Dw1
453	chr2R	12789294	12789320	chr2R	12797657	12797683	roo	6	8363	0.0	3.0	1.5	2.4	8389	chr2R	12789294	intron,3` UTR	sca +,CR45137 -	chr2R	12793488	intron,intron	sca +,CR45137 -	chr2R	12797683	intron,3` UTR	sca +,CR45137 -	chr2R_6_12790001	chr2R_12790001	Samar-Dw1
459	chr2R	13136841	13136867	chr2R	13141639	13141665	Doc	9	4798	6.0	3.5	4.8	1.6	4824	chr2R	13136841	exon	Cap-G +	chr2R	13139253	intron	Cap-G +	chr2R	13141665	intron	Cap-G +	chr2R_9_13135001	chr2R_13135001	Samar-Dw1
466	chr2R	13580503	13580532	chr2R	13580853	13580882	jockey	9	350	1.5	4.5	3.0	2.2	379	chr2R	13580503	3` UTR	CG6191 -	chr2R	13580692	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580882	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_9_13580001	chr2R_13580001	Samar-Dw1
468	chr2R	13728138	13728160	chr2R	13735795	13735817	opus	6	7657	1.0	2.0	1.5	2.4	7679	chr2R	13728138	intron	fas +	chr2R	13731978	intron	fas +	chr2R	13735817	intron	fas +	chr2R_6_13730001	chr2R_13730001	Samar-Dw1
471	chr2R	13905601	13905635	chr2R	13907583	13907617	Rt1a	15	1981	8.0	8.0	8.0	1.7	2016	chr2R	13905601	intron	shot -	chr2R	13906609	intron	shot -	chr2R	13907617	intron	shot -	chr2R_15_13905001	chr2R_13905001	Samar-Dw1
484	chr2R	14889208	14889237	chr2R	14897816	14897845	Max-element	11	8608	4.5	0.5	2.5	3.1	8637	chr2R	14889208	intergenic	Cyp6a8 -	chr2R	14893526	intergenic	not near genes	chr2R	14897845	intergenic	not near genes	chr2R_11_14890001	chr2R_14890001	Samar-Dw1
490	chr2R	15004733	15004752	chr2R	15005062	15005081	jockey	7	329	4.5	5.0	4.8	1.2	348	chr2R	15004733	intergenic	not near genes	chr2R	15004907	intergenic	not near genes	chr2R	15005081	intergenic	not near genes	chr2R_7_15000001	chr2R_15000001	Samar-Dw1
491	chr2R	15015454	15015485	chr2R	15022878	15022909	mdg1	5	7424	5.0	0.0	2.5	1.4	7455	chr2R	15015454	intron	hbs +	chr2R	15019182	intron	hbs +	chr2R	15022909	intron	hbs +	chr2R_5_15015001	chr2R_15015001	Samar-Dw1
493	chr2R	15084986	15085006	chr2R	15092035	15092055	297	10	7049	4.5	4.0	4.2	1.9	7069	chr2R	15084986	intergenic	not near genes	chr2R	15088520	intergenic	not near genes	chr2R	15092055	5` UTR	CR44457 +	chr2R_10_15085001	chr2R_15085001	Samar-Dw1
495	chr2R	15119316	15119351	chr2R	15127797	15127832	Tirant	25	8481	3.5	5.0	4.2	4.8	8516	chr2R	15119316	intron	chn +	chr2R	15123574	intron	chn +	chr2R	15127832	intron	chn +	chr2R_25_15120001	chr2R_15120001	Samar-Dw1
515	chr2R	16539651	16539668	chr2R	16544860	16544877	copia	6	5209	0.5	1.5	1.0	3.0	5226	chr2R	16539651	intergenic	not near genes	chr2R	16542264	intergenic	not near genes	chr2R	16544877	intergenic	not near genes	chr2R_6_16540001	chr2R_16540001	Samar-Dw1
520	chr2R	17147243	17147268	chr2R	17152274	17152299	jockey	10	5031	3.5	2.0	2.8	2.6	5056	chr2R	17147243	intergenic	not near genes	chr2R	17149771	intergenic	not near genes	chr2R	17152299	intergenic	not near genes	chr2R_10_17145001	chr2R_17145001	Samar-Dw1
521	chr2R	17176355	17176381	chr2R	17182545	17182571	diver	8	6190	2.0	4.0	3.0	2.0	6216	chr2R	17176355	intergenic	not near genes	chr2R	17179463	intergenic	not near genes	chr2R	17182571	intergenic	not near genes	chr2R_8_17175001	chr2R_17175001	Samar-Dw1
522	chr2R	17236510	17236542	chr2R	17241714	17241746	copia	5	5204	1.0	1.0	1.0	2.5	5236	chr2R	17236510	intron	mbl +	chr2R	17239128	intron	mbl +	chr2R	17241746	intron	mbl +	chr2R_5_17235001	chr2R_17235001	Samar-Dw1
525	chr2R	17485914	17485940	chr2R	17490676	17490702	F-element	9	4762	3.5	8.0	5.8	1.3	4788	chr2R	17485914	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488308	intron	NT5E-2 +	chr2R	17490702	intron	NT5E-2 +	chr2R_9_17485001	chr2R_17485001	Samar-Dw1
531	chr2R	17784025	17784057	chr2R	17784266	17784298	pogo	25	241	3.0	6.0	4.5	4.5	273	chr2R	17784025	intergenic	mir-31a -	chr2R	17784162	intergenic	mir-31a -	chr2R	17784298	intergenic	mir-31a -	chr2R_25_17780001	chr2R_17780001	Samar-Dw1
534	chr2R	18111688	18111711	chr2R	18115556	18115579	F-element	8	3868	2.0	2.0	2.0	2.7	3891	chr2R	18111688	intergenic	not near genes	chr2R	18113634	intergenic	not near genes	chr2R	18115579	intergenic	not near genes	chr2R_8_18110001	chr2R_18110001	Samar-Dw1
537	chr2R	18358399	18358411	chr2R	18372606	18372623	roo	6	14211	3.5	2.5	3.0	1.5	14224	chr2R	18358399	intergenic	not near genes	chr2R	18365511	intergenic	not near genes	chr2R	18372623	intergenic	not near genes	chr2R_6_18365001	chr2R_18365001	Samar-Dw1
544	chr2R	18575810	18575823	chr2R	18581983	18582011	3S18	6	6183	4.5	2.5	3.5	1.3	6201	chr2R	18575810	intron	GEFmeso -	chr2R	18578910	intron	GEFmeso -	chr2R	18582011	intron	GEFmeso -	chr2R_6_18575001	chr2R_18575001	Samar-Dw1
545	chr2R	18590865	18590901	chr2R	18600017	18600053	roo	8	9152	3.5	2.5	3.0	2.0	9188	chr2R	18590865	intron	GEFmeso -	chr2R	18595459	intron	GEFmeso -	chr2R	18600053	intron	GEFmeso -	chr2R_8_18595001	chr2R_18595001	Samar-Dw1
568	chr2R	19776594	19776628	chr2R	19779917	19779951	jockey	14	3323	1.5	2.5	2.0	4.7	3357	chr2R	19776594	intergenic	not near genes	chr2R	19778272	intergenic	not near genes	chr2R	19779951	intergenic	not near genes	chr2R_14_19775001	chr2R_19775001	Samar-Dw1
569	chr2R	19914854	19914874	chr2R	19922266	19922286	mdg1	4	7412	3.0	2.5	2.8	1.1	7432	chr2R	19914854	intergenic	not near genes	chr2R	19918570	intergenic	not near genes	chr2R	19922286	intergenic	not near genes	chr2R_4_19915001	chr2R_19915001	Samar-Dw1
570	chr2R	19957430	19957464	chr2R	19962632	19962666	copia	9	5202	2.5	4.0	3.2	2.1	5236	chr2R	19957430	intergenic	CG44623 +	chr2R	19960048	intergenic	not near genes	chr2R	19962666	intergenic	not near genes	chr2R_9_19960001	chr2R_19960001	Samar-Dw1
580	chr2R	20739441	20739476	chr2R	20744209	20744244	F-element	14	4768	4.0	5.5	4.8	2.4	4803	chr2R	20739441	intron	dpr +	chr2R	20741842	intron	dpr +	chr2R	20744244	intron	dpr +	chr2R_14_20740001	chr2R_20740001	Samar-Dw1
581	chr2R	20783323	20783333	chr2R	20788095	20788105	F-element	5	4772	2.5	3.0	2.8	1.3	4782	chr2R	20783323	intergenic	not near genes	chr2R	20785714	intergenic	not near genes	chr2R	20788105	intergenic	CG43666 -	chr2R_5_20785001	chr2R_20785001	Samar-Dw1
598	chr2R	21809523	21809556	chr2R	21817763	21817796	roo	8	8240	2.0	2.5	2.2	2.5	8273	chr2R	21809523	intergenic	not near genes	chr2R	21813660	intergenic	not near genes	chr2R	21817796	intergenic	not near genes	chr2R_8_21810001	chr2R_21810001	Samar-Dw1
608	chr2R	22349691	22349725	chr2R	22351475	22351509	jockey	9	1784	3.0	6.5	4.8	1.6	1818	chr2R	22349691	intron	Liprin-gamma -	chr2R	22350600	intron	Liprin-gamma -	chr2R	22351509	intron	Liprin-gamma -	chr2R_9_22350001	chr2R_22350001	Samar-Dw1
609	chr2R	22360381	22360395	chr2R	22360814	22360828	jockey	4	433	3.5	2.0	2.8	1.1	447	chr2R	22360381	intron	Liprin-gamma -	chr2R	22360604	intron	Liprin-gamma -	chr2R	22360828	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	Samar-Dw1
611	chr2R	22525754	22525772	chr2R	22529309	22529327	jockey	4	3555	2.5	1.0	1.8	1.4	3573	chr2R	22525754	intron	px -	chr2R	22527540	intron	px -	chr2R	22529327	intron	px -	chr2R_4_22525001	chr2R_22525001	Samar-Dw1
615	chr2R	22729463	22729467	chr2R	22729671	22729675	INE-1	5	208	3.5	2.5	3.0	1.2	212	chr2R	22729463	intron	jbug -	chr2R	22729569	intron	jbug -	chr2R	22729675	intron	jbug -	chr2R_5_22725001	chr2R_22725001	Samar-Dw1
617	chr2R	22774964	22775000	chr2R	22775383	22775419	jockey	16	419	5.0	3.0	4.0	3.2	455	chr2R	22774964	intron	CG42260 -	chr2R	22775192	intron	CG42260 -	chr2R	22775419	intron	CG42260 -	chr2R_16_22775001	chr2R_22775001	Samar-Dw1
630	chr2R	23402616	23402641	chr2R	23407692	23407717	flea	4	5076	1.0	2.0	1.5	1.6	5101	chr2R	23402616	intergenic	CG3520 -	chr2R	23405166	intergenic	not near genes	chr2R	23407717	intergenic	not near genes	chr2R_4_23405001	chr2R_23405001	Samar-Dw1
636	chr2R	23529573	23529606	chr2R	23537149	23537182	412	23	7576	4.0	8.5	6.2	3.2	7609	chr2R	23529573	intron	bw -	chr2R	23533378	intron	bw -	chr2R	23537182	exon	bw -	chr2R_23_23530001	chr2R_23530001	Samar-Dw1
640	chr2R	23914310	23914332	chr2R	23921934	23921956	412	12	7624	3.0	19.0	11.0	1.0	7646	chr2R	23914310	exon	kcc +	chr2R	23918133	intron	kcc +	chr2R	23921956	intron	kcc +	chr2R_12_23915001	chr2R_23915001	Samar-Dw1
642	chr2R	24147066	24147097	chr2R	24154644	24154675	412	11	7578	2.5	1.5	2.0	3.7	7609	chr2R	24147066	intron	Dat +	chr2R	24150870	intron	Dat +	chr2R	24154675	intron	Dat +	chr2R_11_24150001	chr2R_24150001	Samar-Dw1
643	chr2R	24177240	24177263	chr2R	24184725	24184748	412	6	7485	3.5	3.5	3.5	1.3	7508	chr2R	24177240	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184748	3` UTR	Nop60B +	chr2R_6_24180001	chr2R_24180001	Samar-Dw1
653	chr2R	24647574	24647616	chr2R	24655145	24655173	412	4	7560	0.0	3.5	1.8	1.4	7599	chr2R	24647574	intergenic	not near genes	chr2R	24651374	intergenic	not near genes	chr2R	24655173	intergenic	not near genes	chr2R_4_24650001	chr2R_24650001	Samar-Dw1
656	chr2R	24727885	24727918	chr2R	24735393	24735426	mdg1	10	7508	5.0	4.5	4.8	1.7	7541	chr2R	24727885	intron	Mid1 -	chr2R	24731656	intron	Mid1 -	chr2R	24735426	intron	Mid1 -	chr2R_10_24730001	chr2R_24730001	Samar-Dw1
657	chr2R	24763609	24763644	chr2R	24765585	24765620	G2	29	1976	5.0	5.5	5.2	4.7	2011	chr2R	24763609	exon	CG3894 +	chr2R	24764614	intron	CG3894 +	chr2R	24765620	exon	CG3894 +	chr2R_29_24760001	chr2R_24760001	Samar-Dw1
674	chr3L	402689	402716	chr3L	409742	409769	297	13	7053	5.0	9.0	7.0	1.6	7080	chr3L	402689	intergenic	not near genes	chr3L	406229	intergenic	not near genes	chr3L	409769	intergenic	not near genes	chr3L_13_405001	chr3L_405001	Samar-Dw1
682	chr3L	857997	858031	chr3L	866478	866512	Tirant	16	8481	4.0	2.5	3.2	3.8	8515	chr3L	857997	intergenic	not near genes	chr3L	862254	intergenic	not near genes	chr3L	866512	5` UTR	CG12502 +	chr3L_16_860001	chr3L_860001	Samar-Dw1
684	chr3L	925176	925209	chr3L	932602	932635	mdg1	12	7426	0.5	2.5	1.5	4.8	7459	chr3L	925176	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932635	intron	Glut1 +	chr3L_12_925001	chr3L_925001	Samar-Dw1
686	chr3L	939770	939800	chr3L	940891	940921	jockey	8	1121	3.0	1.5	2.2	2.5	1151	chr3L	939770	intron	Glut1 +	chr3L	940346	intron	Glut1 +	chr3L	940921	intron	Glut1 +	chr3L_8_940001	chr3L_940001	Samar-Dw1
691	chr3L	1154135	1154162	chr3L	1163286	1163312	roo	5	9150	1.0	4.5	2.8	1.3	9177	chr3L	1154135	intron	bab2 -	chr3L	1158724	intron	bab2 -	chr3L	1163312	intron	bab2 -	chr3L_5_1155001	chr3L_1155001	Samar-Dw1
692	chr3L	1219594	1219623	chr3L	1227327	1227356	412	6	7733	5.5	3.0	4.2	1.2	7762	chr3L	1219594	intron	mwh +	chr3L	1223475	intron	mwh +	chr3L	1227356	intron	mwh +	chr3L_6_1220001	chr3L_1220001	Samar-Dw1
698	chr3L	1485737	1485741	chr3L	1486908	1486912	1360	6	1171	6.5	12.0	9.2	0.6	1175	chr3L	1485737	intron	stet -	chr3L	1486324	intron	stet -	chr3L	1486912	intron	stet -	chr3L_6_1485001	chr3L_1485001	Samar-Dw1
700	chr3L	1505998	1506029	chr3L	1513595	1513626	17.6	8	7597	7.0	3.5	5.2	1.3	7628	chr3L	1505998	intron,intron	Psa +,cue -	chr3L	1509812	intron,intron	Psa +,cue -	chr3L	1513626	intron,intron	Psa +,cue -	chr3L_8_1505001	chr3L_1505001	Samar-Dw1
707	chr3L	2108269	2108275	chr3L	2113473	2113479	copia	4	5204	1.5	3.5	2.5	1.1	5210	chr3L	2108269	intron	sls -	chr3L	2110874	intron	sls -	chr3L	2113479	intron	sls -	chr3L_4_2110001	chr3L_2110001	Samar-Dw1
714	chr3L	2447502	2447538	chr3L	2456658	2456694	roo	11	9156	2.5	4.0	3.2	2.6	9192	chr3L	2447502	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456694	intron	CG45186 +	chr3L_11_2450001	chr3L_2450001	Samar-Dw1
721	chr3L	2927840	2927864	chr3L	2936117	2936141	Tirant	5	8277	0.5	1.5	1.0	2.5	8301	chr3L	2927840	intron	Shab +	chr3L	2931990	intron	Shab +	chr3L	2936141	intron	Shab +	chr3L_5_2930001	chr3L_2930001	Samar-Dw1
723	chr3L	3061283	3061312	chr3L	3069866	3069895	Tirant	4	8583	4.0	1.0	2.5	1.1	8612	chr3L	3061283	intron	CG32486 -	chr3L	3065589	intron	CG32486 -	chr3L	3069895	intron	CG32486 -	chr3L_4_3065001	chr3L_3065001	Samar-Dw1
724	chr3L	3281437	3281471	chr3L	3281933	3281967	Doc	19	496	6.0	3.5	4.8	3.3	530	chr3L	3281437	intron	CG12017 +	chr3L	3281702	intron	CG12017 +	chr3L	3281967	intron	CG12017 +	chr3L_19_3280001	chr3L_3280001	Samar-Dw1
727	chr3L	3475078	3475105	chr3L	3475522	3475549	jockey	6	444	2.0	2.5	2.2	1.9	471	chr3L	3475078	intron	CG42324 +	chr3L	3475314	intron	CG42324 +	chr3L	3475549	intron	CG42324 +	chr3L_6_3475001	chr3L_3475001	Samar-Dw1
730	chr3L	3601296	3601329	chr3L	3606607	3606640	copia	5	5311	3.0	1.5	2.2	1.6	5344	chr3L	3601296	intron	Eip63E +	chr3L	3603968	intron	Eip63E +	chr3L	3606640	intron	Eip63E +	chr3L_5_3600001	chr3L_3600001	Samar-Dw1
746	chr3L	4901125	4901146	chr3L	4907315	4907336	diver	7	6190	1.5	2.0	1.8	2.5	6211	chr3L	4901125	intergenic	CG13704 +	chr3L	4904230	intergenic	not near genes	chr3L	4907336	intergenic	not near genes	chr3L_7_4900001	chr3L_4900001	Samar-Dw1
748	chr3L	5034157	5034163	chr3L	5043309	5043315	roo	4	9152	2.0	0.0	1.0	2.0	9158	chr3L	5034157	intron	Con -	chr3L	5038736	intron	Con -	chr3L	5043315	intron	Con -	chr3L_4_5035001	chr3L_5035001	Samar-Dw1
749	chr3L	5045471	5045485	chr3L	5050252	5050266	Doc	5	4781	1.5	3.5	2.5	1.4	4795	chr3L	5045471	intron	Con -	chr3L	5047868	intron	Con -	chr3L	5050266	intron	Con -	chr3L_5_5045001	chr3L_5045001	Samar-Dw1
756	chr3L	5537721	5537744	chr3L	5538063	5538086	jockey	4	342	2.5	2.0	2.2	1.2	365	chr3L	5537721	intergenic	not near genes	chr3L	5537904	intergenic	not near genes	chr3L	5538086	intergenic	CG10625 -	chr3L_4_5535001	chr3L_5535001	Samar-Dw1
759	chr3L	5926319	5926348	chr3L	5926509	5926538	BS	12	190	2.5	3.5	3.0	3.0	219	chr3L	5926319	intron	Vap-33B +	chr3L	5926428	intron	Vap-33B +	chr3L	5926538	intron	Vap-33B +	chr3L_12_5925001	chr3L_5925001	Samar-Dw1
762	chr3L	6001679	6001717	chr3L	6004379	6004417	jockey	6	2700	1.5	0.5	1.0	3.0	2738	chr3L	6001679	intron	PVRAP +	chr3L	6003048	intron	PVRAP +	chr3L	6004417	intron	PVRAP +	chr3L_6_6000001	chr3L_6000001	Samar-Dw1
766	chr3L	6220919	6220948	chr3L	6230071	6230100	roo	10	9152	5.0	3.0	4.0	2.0	9181	chr3L	6220919	5` UTR	pncr008:3L +	chr3L	6225510	intergenic	not near genes	chr3L	6230100	intergenic	not near genes	chr3L_10_6225001	chr3L_6225001	Samar-Dw1
767	chr3L	6335008	6335041	chr3L	6335479	6335512	297	12	471	2.0	5.0	3.5	2.7	504	chr3L	6335008	intron	CG13300 -	chr3L	6335260	intron	CG13300 -	chr3L	6335512	intron	CG13300 -	chr3L_12_6335001	chr3L_6335001	Samar-Dw1
772	chr3L	6781125	6781143	chr3L	6783138	6783156	Doc	5	2013	1.0	0.0	0.5	3.3	2031	chr3L	6781125	intergenic	not near genes	chr3L	6782140	intergenic	not near genes	chr3L	6783156	intergenic	not near genes	chr3L_5_6780001	chr3L_6780001	Samar-Dw1
775	chr3L	6887522	6887546	chr3L	6895014	6895038	roo	4	7492	1.0	2.5	1.8	1.4	7516	chr3L	6887522	intergenic	not near genes	chr3L	6891280	intergenic	not near genes	chr3L	6895038	intergenic	not near genes	chr3L_4_6890001	chr3L_6890001	Samar-Dw1
783	chr3L	7377314	7377346	chr3L	7380419	7380451	297	10	3105	3.0	3.5	3.2	2.4	3137	chr3L	7377314	intron	SMSr -	chr3L	7378882	intron	SMSr -	chr3L	7380451	intron	SMSr -	chr3L_10_7375001	chr3L_7375001	Samar-Dw1
785	chr3L	7498759	7498785	chr3L	7503536	7503562	F-element	4	4777	2.0	1.5	1.8	1.4	4803	chr3L	7498759	5` UTR	CG8539 -	chr3L	7501160	intergenic	not near genes	chr3L	7503562	intergenic	not near genes	chr3L_4_7500001	chr3L_7500001	Samar-Dw1
791	chr3L	7793711	7793736	chr3L	7800763	7800788	297	5	7052	5.5	1.5	3.5	1.1	7077	chr3L	7793711	intron	CG32369 -	chr3L	7797250	intron	CG32369 -	chr3L	7800788	intron	CG32369 -	chr3L_5_7795001	chr3L_7795001	Samar-Dw1
794	chr3L	7985361	7985392	chr3L	7987689	7987720	NOF	9	2328	1.0	2.0	1.5	3.6	2359	chr3L	7985361	intron	nmo +	chr3L	7986540	intron	nmo +	chr3L	7987720	intron	nmo +	chr3L_9_7985001	chr3L_7985001	Samar-Dw1
798	chr3L	8481771	8481798	chr3L	8490930	8490957	roo	11	9159	5.5	3.5	4.5	2.0	9186	chr3L	8481771	intron	CG43163 -	chr3L	8486364	intron	CG43163 -	chr3L	8490957	intron	CG43163 -	chr3L_11_8485001	chr3L_8485001	Samar-Dw1
799	chr3L	8498300	8498327	chr3L	8505767	8505794	blood	4	7467	1.0	1.5	1.2	1.8	7494	chr3L	8498300	intron	CG43163 -	chr3L	8502047	intron	CG43163 -	chr3L	8505794	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	Samar-Dw1
800	chr3L	8791278	8791288	chr3L	8796698	8796708	I-element	4	5420	10.0	2.5	6.2	0.6	5430	chr3L	8791278	exon	Fhos +	chr3L	8793993	intron	Fhos +	chr3L	8796708	intron	Fhos +	chr3L_4_8790001	chr3L_8790001	Samar-Dw1
802	chr3L	9164696	9164729	chr3L	9166163	9166196	hobo	6	1467	1.5	0.5	1.0	3.0	1500	chr3L	9164696	intron	Rdl -	chr3L	9165446	intron	Rdl -	chr3L	9166196	intron	Rdl -	chr3L_6_9165001	chr3L_9165001	Samar-Dw1
805	chr3L	9219240	9219273	chr3L	9219912	9219945	jockey	19	672	5.0	4.5	4.8	3.3	705	chr3L	9219240	intergenic	not near genes	chr3L	9219592	intergenic	not near genes	chr3L	9219945	intergenic	not near genes	chr3L_19_9215001	chr3L_9215001	Samar-Dw1
807	chr3L	9270632	9270650	chr3L	9278383	9278401	roo	7	7751	2.5	7.5	5.0	1.2	7769	chr3L	9270632	intron	GluRIB +	chr3L	9274516	intron	GluRIB +	chr3L	9278401	exon	GluRIB +	chr3L_7_9270001	chr3L_9270001	Samar-Dw1
813	chr3L	9501716	9501734	chr3L	9502202	9502220	roo	6	486	0.5	4.0	2.2	1.9	504	chr3L	9501716	intron	path -	chr3L	9501968	intron	path -	chr3L	9502220	intron	path -	chr3L_6_9500001	chr3L_9500001	Samar-Dw1
814	chr3L	9533754	9533786	chr3L	9541314	9541346	412	20	7560	5.0	6.5	5.8	2.9	7592	chr3L	9533754	intergenic	not near genes	chr3L	9537550	intergenic	not near genes	chr3L	9541346	intergenic	not near genes	chr3L_20_9535001	chr3L_9535001	Samar-Dw1
815	chr3L	9575908	9575934	chr3L	9580986	9581012	jockey	11	5078	8.5	3.5	6.0	1.6	5104	chr3L	9575908	intron	CG42673 +	chr3L	9578460	intron	CG42673 +	chr3L	9581012	intron	CG42673 +	chr3L_11_9575001	chr3L_9575001	Samar-Dw1
820	chr3L	9929677	9929698	chr3L	9938458	9938479	roo	5	8781	2.5	1.0	1.8	1.8	8802	chr3L	9929677	intron	CG34356 +	chr3L	9934078	intron	CG34356 +	chr3L	9938479	intron	CG34356 +	chr3L_5_9930001	chr3L_9930001	Samar-Dw1
821	chr3L	10060110	10060117	chr3L	10067689	10067696	17.6	5	7579	3.5	2.5	3.0	1.2	7586	chr3L	10060110	intron	dpr6 +	chr3L	10063903	intron	dpr6 +	chr3L	10067696	intron	dpr6 +	chr3L_5_10060001	chr3L_10060001	Samar-Dw1
829	chr3L	10414940	10414969	chr3L	10417312	10417341	Doc	12	2372	0.5	1.5	1.0	6.0	2401	chr3L	10414940	intergenic	CG12362 +	chr3L	10416140	intergenic	not near genes	chr3L	10417341	intergenic	not near genes	chr3L_12_10415001	chr3L_10415001	Samar-Dw1
841	chr3L	11277458	11277483	chr3L	11278453	11278478	Rt1a	7	995	0.5	3.0	1.8	2.5	1020	chr3L	11277458	intergenic	not near genes	chr3L	11277968	intergenic	not near genes	chr3L	11278478	intergenic	not near genes	chr3L_7_11275001	chr3L_11275001	Samar-Dw1
842	chr3L	11329691	11329717	chr3L	11332896	11332922	jockey	6	3205	2.0	0.5	1.2	2.7	3231	chr3L	11329691	intergenic	not near genes	chr3L	11331306	intergenic	not near genes	chr3L	11332922	intergenic	not near genes	chr3L_6_11330001	chr3L_11330001	Samar-Dw1
844	chr3L	11564789	11564812	chr3L	11572414	11572437	412	12	7624	2.5	10.0	6.2	1.7	7648	chr3L	11564789	exon	CG33267 +	chr3L	11568613	intron	CG33267 +	chr3L	11572437	exon	CG33267 +	chr3L_12_11565001	chr3L_11565001	Samar-Dw1
847	chr3L	11723082	11723115	chr3L	11727877	11727910	Doc	5	4795	1.5	1.5	1.5	2.0	4828	chr3L	11723082	3` UTR	Bmcp +	chr3L	11725496	intron	Bmcp +	chr3L	11727910	3` UTR	Bmcp +	chr3L_5_11725001	chr3L_11725001	Samar-Dw1
865	chr3L	12874930	12874963	chr3L	12877222	12877255	jockey	10	2292	1.0	2.0	1.5	4.0	2325	chr3L	12874930	intergenic	not near genes	chr3L	12876092	intergenic	not near genes	chr3L	12877255	intergenic	not near genes	chr3L_10_12875001	chr3L_12875001	Samar-Dw1
867	chr3L	12919278	12919294	chr3L	12924751	12924767	Rt1c	7	5473	9.0	1.0	5.0	1.2	5489	chr3L	12919278	intergenic	not near genes	chr3L	12922022	intergenic	not near genes	chr3L	12924767	intergenic	not near genes	chr3L_7_12920001	chr3L_12920001	Samar-Dw1
870	chr3L	12957784	12957810	chr3L	12962266	12962292	copia	7	4482	1.5	2.0	1.8	2.5	4508	chr3L	12957784	intergenic	not near genes	chr3L	12960038	intergenic	not near genes	chr3L	12962292	intergenic	not near genes	chr3L_7_12960001	chr3L_12960001	Samar-Dw1
879	chr3L	13525156	13525190	chr3L	13532952	13532986	roo	14	7796	3.0	5.5	4.2	2.7	7830	chr3L	13525156	intergenic	not near genes	chr3L	13529071	intergenic	not near genes	chr3L	13532986	intergenic	not near genes	chr3L_14_13525001	chr3L_13525001	Samar-Dw1
885	chr3L	13804545	13804577	chr3L	13822831	13822863	roo	13	18286	1.5	4.5	3.0	3.2	18318	chr3L	13804545	intergenic	not near genes	chr3L	13813704	intergenic	not near genes	chr3L	13822863	intergenic	not near genes	chr3L_13_13810001	chr3L_13810001	Samar-Dw1
891	chr3L	14245569	14245593	chr3L	14245663	14245687	1360	15	94	5.0	3.0	4.0	3.0	118	chr3L	14245569	3` UTR	CR44561 -	chr3L	14245628	3` UTR	CR44561 -	chr3L	14245687	3` UTR	CR44561 -	chr3L_15_14245001	chr3L_14245001	Samar-Dw1
893	chr3L	14295980	14296014	chr3L	14296466	14296500	roo	21	486	4.0	6.5	5.2	3.4	520	chr3L	14295980	intron	fz +	chr3L	14296240	intron	fz +	chr3L	14296500	intron	fz +	chr3L_21_14295001	chr3L_14295001	Samar-Dw1
894	chr3L	14312020	14312054	chr3L	14316834	14316868	X-element	8	4814	3.5	1.0	2.2	2.5	4848	chr3L	14312020	exon	fz +	chr3L	14314444	intron	fz +	chr3L	14316868	intron	fz +	chr3L_8_14310001	chr3L_14310001	Samar-Dw1
896	chr3L	14468450	14468478	chr3L	14473656	14473684	copia	4	5206	1.5	3.5	2.5	1.1	5234	chr3L	14468450	intron	bbg -	chr3L	14471067	intron	bbg -	chr3L	14473684	intron	bbg -	chr3L_4_14470001	chr3L_14470001	Samar-Dw1
899	chr3L	14721183	14721198	chr3L	14723026	14723041	Rt1c	8	1843	3.0	2.0	2.5	2.3	1858	chr3L	14721183	intron	ome +	chr3L	14722112	intron	ome +	chr3L	14723041	intron	ome +	chr3L_8_14720001	chr3L_14720001	Samar-Dw1
904	chr3L	15085048	15085081	chr3L	15086214	15086247	1360	5	1166	0.0	0.0	0.0	5.0	1199	chr3L	15085048	intron	cp309 -	chr3L	15085648	intron	cp309 -	chr3L	15086247	intron	cp309 -	chr3L_5_15085001	chr3L_15085001	Samar-Dw1
917	chr3L	15899231	15899252	chr3L	15899798	15899819	jockey	6	567	1.0	3.0	2.0	2.0	588	chr3L	15899231	intergenic	pHCl -	chr3L	15899525	intergenic	pHCl -	chr3L	15899819	intergenic	sff -	chr3L_6_15895001	chr3L_15895001	Samar-Dw1
920	chr3L	16184103	16184136	chr3L	16188922	16188955	X-element	9	4819	3.0	2.5	2.8	2.4	4852	chr3L	16184103	intergenic	not near genes	chr3L	16186529	intergenic	not near genes	chr3L	16188955	intergenic	not near genes	chr3L_9_16185001	chr3L_16185001	Samar-Dw1
923	chr3L	16443850	16443876	chr3L	16446190	16446216	Doc	11	2340	2.5	2.5	2.5	3.1	2366	chr3L	16443850	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445033	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446216	intron,intron	CG33158 +,dsx-c73A -	chr3L_11_16445001	chr3L_16445001	Samar-Dw1
927	chr3L	16493973	16493993	chr3L	16494490	16494510	jockey	10	517	8.5	3.5	6.0	1.4	537	chr3L	16493973	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494242	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494510	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_10_16490001	chr3L_16490001	Samar-Dw1
929	chr3L	16616511	16616542	chr3L	16621839	16621870	297	6	5328	2.5	0.5	1.5	2.4	5359	chr3L	16616511	3` UTR	Abl -	chr3L	16619190	3` UTR	Abl -	chr3L	16621870	3` UTR	Abl -	chr3L_6_16615001	chr3L_16615001	Samar-Dw1
936	chr3L	16945726	16945756	chr3L	16954879	16954909	roo	7	9153	3.5	7.0	5.2	1.1	9183	chr3L	16945726	exon	Obp73a +	chr3L	16950318	intergenic	not near genes	chr3L	16954909	5` UTR	Nc73EF +	chr3L_7_16950001	chr3L_16950001	Samar-Dw1
938	chr3L	17085009	17085035	chr3L	17094158	17094184	roo	6	9149	4.5	5.0	4.8	1.0	9175	chr3L	17085009	intron	Rbp6 -	chr3L	17089596	intron	Rbp6 -	chr3L	17094184	intron	Rbp6 -	chr3L_6_17085001	chr3L_17085001	Samar-Dw1
945	chr3L	17516978	17517007	chr3L	17524536	17524565	412	10	7558	2.5	4.5	3.5	2.2	7587	chr3L	17516978	intron	CG7564 +	chr3L	17520772	intron	CG7564 +	chr3L	17524565	3` UTR	CG7564 +	chr3L_10_17520001	chr3L_17520001	Samar-Dw1
951	chr3L	17799814	17799839	chr3L	17801601	17801626	S-element	5	1787	4.0	3.5	3.8	1.0	1812	chr3L	17799814	intron	NUCB1 -	chr3L	17800720	intron	NUCB1 -	chr3L	17801626	intron	NUCB1 -	chr3L_5_17800001	chr3L_17800001	Samar-Dw1
961	chr3L	18514903	18514939	chr3L	18520094	18520100	BS	15	5189	2.0	1.0	1.5	6.0	5197	chr3L	18514903	intergenic	not near genes	chr3L	18517502	intergenic	not near genes	chr3L	18520100	intergenic	not near genes	chr3L_15_18515001	chr3L_18515001	Samar-Dw1
962	chr3L	18528630	18528650	chr3L	18537791	18537811	roo	6	9161	1.0	2.0	1.5	2.4	9181	chr3L	18528630	intergenic	not near genes	chr3L	18533220	intergenic	not near genes	chr3L	18537811	intergenic	not near genes	chr3L_6_18530001	chr3L_18530001	Samar-Dw1
965	chr3L	18772406	18772438	chr3L	18781087	18781119	roo	8	8681	1.0	1.5	1.2	3.6	8713	chr3L	18772406	intron	ftz-f1 -	chr3L	18776762	intron	ftz-f1 -	chr3L	18781119	intron	ftz-f1 -	chr3L_8_18775001	chr3L_18775001	Samar-Dw1
972	chr3L	19008853	19008869	chr3L	19009191	19009207	jockey	5	338	1.0	7.0	4.0	1.0	354	chr3L	19008853	intron	nkd -	chr3L	19009030	intron	nkd -	chr3L	19009207	intron	nkd -	chr3L_5_19005001	chr3L_19005001	Samar-Dw1
975	chr3L	19115638	19115665	chr3L	19115815	19115843	BS	5	178	2.5	1.5	2.0	1.7	205	chr3L	19115638	intron	CG14082 -	chr3L	19115740	intron	CG14082 -	chr3L	19115843	intron	CG14082 -	chr3L_5_19115001	chr3L_19115001	Samar-Dw1
976	chr3L	19117045	19117075	chr3L	19124492	19124522	mdg1	8	7447	2.0	2.5	2.2	2.5	7477	chr3L	19117045	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124522	intron	CG14082 -	chr3L_8_19120001	chr3L_19120001	Samar-Dw1
980	chr3L	19208058	19208091	chr3L	19209432	19209465	Doc	8	1374	1.0	2.5	1.8	2.9	1407	chr3L	19208058	intron	fz2 -	chr3L	19208762	intron	fz2 -	chr3L	19209465	intron	fz2 -	chr3L_8_19205001	chr3L_19205001	Samar-Dw1
989	chr3L	19820302	19820316	chr3L	19827851	19827865	412	5	7549	1.5	1.5	1.5	2.0	7563	chr3L	19820302	intron	Deaf1 +	chr3L	19824084	intron	Deaf1 +	chr3L	19827865	intron	Deaf1 +	chr3L_5_19820001	chr3L_19820001	Samar-Dw1
992	chr3L	19848512	19848529	chr3L	19857702	19857719	roo	4	9190	2.5	5.5	4.0	0.8	9207	chr3L	19848512	intron	Papss +	chr3L	19853116	intron	Papss +	chr3L	19857719	intron	Papss +	chr3L_4_19850001	chr3L_19850001	Samar-Dw1
1002	chr3L	20476752	20476785	chr3L	20484351	20484384	springer	4	7599	0.5	2.5	1.5	1.6	7632	chr3L	20476752	3` UTR	isoQC +	chr3L	20480568	intergenic	not near genes	chr3L	20484384	3` UTR	ZnT77C -	chr3L_4_20480001	chr3L_20480001	Samar-Dw1
1004	chr3L	20590065	20590088	chr3L	20590604	20590627	412	6	539	2.5	3.0	2.8	1.6	562	chr3L	20590065	intergenic	not near genes	chr3L	20590346	intergenic	not near genes	chr3L	20590627	intergenic	not near genes	chr3L_6_20590001	chr3L_20590001	Samar-Dw1
1009	chr3L	21014913	21014944	chr3L	21023394	21023425	Tirant	20	8481	6.0	4.5	5.2	3.2	8512	chr3L	21014913	intron	skd -	chr3L	21019169	intron	skd -	chr3L	21023425	intron	skd -	chr3L_20_21015001	chr3L_21015001	Samar-Dw1
1010	chr3L	21151863	21151893	chr3L	21156947	21156977	flea	8	5084	5.0	2.0	3.5	1.8	5114	chr3L	21151863	intron	Ac78C -	chr3L	21154420	intron	Ac78C -	chr3L	21156977	intron	Ac78C -	chr3L_8_21150001	chr3L_21150001	Samar-Dw1
1011	chr3L	21306160	21306178	chr3L	21315319	21315337	roo	4	9159	5.5	3.5	4.5	0.7	9177	chr3L	21306160	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310748	intron	Pc -	chr3L	21315337	3` UTR	Pc -	chr3L_4_21310001	chr3L_21310001	Samar-Dw1
1015	chr3L	21498834	21498869	chr3L	21500468	21500504	1360	8	1634	3.5	4.5	4.0	1.6	1670	chr3L	21498834	intron	Glg1 -	chr3L	21499669	intron	Glg1 -	chr3L	21500504	intron	Glg1 -	chr3L_8_21495001	chr3L_21495001	Samar-Dw1
1019	chr3L	21749317	21749337	chr3L	21754477	21754497	Doc	9	5160	3.5	4.0	3.8	1.9	5180	chr3L	21749317	intron	Syn1 -	chr3L	21751907	intron	Syn1 -	chr3L	21754497	intron	Syn1 -	chr3L_9_21750001	chr3L_21750001	Samar-Dw1
1025	chr3L	22099675	22099702	chr3L	22105861	22105888	3S18	11	6186	5.0	3.0	4.0	2.2	6213	chr3L	22099675	intergenic	not near genes	chr3L	22102782	intergenic	not near genes	chr3L	22105888	intergenic	not near genes	chr3L_11_22100001	chr3L_22100001	Samar-Dw1
1042	chr3L	22555770	22555803	chr3L	22563240	22563273	blood	20	7470	3.5	4.5	4.0	4.0	7503	chr3L	22555770	intergenic	not near genes	chr3L	22559522	intergenic	not near genes	chr3L	22563273	intergenic	not near genes	chr3L_20_22555001	chr3L_22555001	Samar-Dw1
1043	chr3L	22577619	22577649	chr3L	22582407	22582437	Doc	7	4788	2.0	2.5	2.2	2.2	4818	chr3L	22577619	intergenic	not near genes	chr3L	22580028	intergenic	not near genes	chr3L	22582437	3` UTR	CG14459 -	chr3L_7_22580001	chr3L_22580001	Samar-Dw1
1045	chr3L	22617188	22617222	chr3L	22624640	22624674	blood	9	7452	2.5	2.5	2.5	2.6	7486	chr3L	22617188	intron	CG14459 -	chr3L	22620931	intron	CG14459 -	chr3L	22624674	intron	CG14459 -	chr3L_9_22620001	chr3L_22620001	Samar-Dw1
1052	chr3L	22761386	22761415	chr3L	22766820	22766849	Ivk	10	5434	3.0	3.0	3.0	2.5	5463	chr3L	22761386	intron	SPoCk +	chr3L	22764118	intron	SPoCk +	chr3L	22766849	intron	SPoCk +	chr3L_10_22760001	chr3L_22760001	Samar-Dw1
1059	chr3L	22989860	22989894	chr3L	22996834	22996868	297	9	6974	2.5	2.0	2.2	2.8	7008	chr3L	22989860	intergenic	not near genes	chr3L	22993364	intergenic	not near genes	chr3L	22996868	intergenic	not near genes	chr3L_9_22990001	chr3L_22990001	Samar-Dw1
1063	chr3L	24168787	24168821	chr3L	24176115	24176149	ZAM	31	7328	5.5	8.0	6.8	4.0	7362	chr3L	24168787	intron	Snap25 +	chr3L	24172468	intron	Snap25 +	chr3L	24176149	intron	Snap25 +	chr3L_31_24170001	chr3L_24170001	Samar-Dw1
1066	chr3L	23535680	23535682	chr3L	26026747	26026749	Max-element	5	2491067	19.0	26.5	22.8	0.2	2491069	chr3L	23535680	intergenic	not near genes	chr3L	24781214	intergenic	not near genes	chr3L	26026749	intergenic	not near genes	chr3L_5_24780001	chr3L_24780001	Samar-Dw1
1070	chr3R	1867170	1867174	chr3R	1954921	1954925	Doc3-element	6	87751	16.0	9.0	12.5	0.4	87755	chr3R	1867170	intron	CG42623 +	chr3R	1911048	intron	CG42623 +	chr3R	1954925	intergenic	not near genes	chr3R_6_1910001	chr3R_1910001	Samar-Dw1
1075	chr3R	4366755	4366782	chr3R	4375138	4375165	roo	6	8383	2.0	3.0	2.5	1.7	8410	chr3R	4366755	3` UTR	CG1090 +	chr3R	4370960	intergenic	not near genes	chr3R	4375165	5` UTR	CR44922 +	chr3R_6_4370001	chr3R_4370001	Samar-Dw1
1076	chr3R	4408418	4408434	chr3R	4412722	4412738	Juan	6	4304	2.0	4.5	3.2	1.4	4320	chr3R	4408418	intron	CG32944 -	chr3R	4410578	intron	CG32944 -	chr3R	4412738	intron	CG32944 -	chr3R_6_4410001	chr3R_4410001	Samar-Dw1
1079	chr3R	4609549	4609582	chr3R	4610713	4610746	1360	14	1164	2.5	3.5	3.0	3.5	1197	chr3R	4609549	intergenic	not near genes	chr3R	4610148	intergenic	not near genes	chr3R	4610746	intergenic	not near genes	chr3R_14_4610001	chr3R_4610001	Samar-Dw1
1082	chr3R	4683178	4683208	chr3R	4684937	4684967	S-element	13	1759	2.5	4.5	3.5	2.9	1789	chr3R	4683178	intron	CG43427 +	chr3R	4684072	intron	CG43427 +	chr3R	4684967	intron	CG43427 +	chr3R_13_4680001	chr3R_4680001	Samar-Dw1
1084	chr3R	4753240	4753268	chr3R	4757543	4757571	F-element	15	4303	3.5	10.0	6.8	1.9	4331	chr3R	4753240	intron,intron	atms +,CG44098 -	chr3R	4755406	intron,intron	atms +,CG44098 -	chr3R	4757571	intron,exon	atms +,CG44098 -	chr3R_15_4755001	chr3R_4755001	Samar-Dw1
1088	chr3R	4887478	4887494	chr3R	4894855	4894871	rover	7	7377	7.0	2.5	4.8	1.2	7393	chr3R	4887478	intergenic	not near genes	chr3R	4891174	intergenic	not near genes	chr3R	4894871	intergenic	not near genes	chr3R_7_4890001	chr3R_4890001	Samar-Dw1
1090	chr3R	5045843	5045864	chr3R	5052945	5052966	HMS-Beagle	7	7102	3.5	1.0	2.2	2.2	7123	chr3R	5045843	intron	CR43635 -	chr3R	5049404	intergenic	not near genes	chr3R	5052966	intergenic	CR45588 -	chr3R_7_5045001	chr3R_5045001	Samar-Dw1
1091	chr3R	5067979	5068011	chr3R	5073496	5073528	mdg3	5	5517	3.0	6.5	4.8	0.9	5549	chr3R	5067979	intergenic	not near genes	chr3R	5070754	intergenic	not near genes	chr3R	5073528	intergenic	not near genes	chr3R_5_5070001	chr3R_5070001	Samar-Dw1
1095	chr3R	5338399	5338428	chr3R	5343576	5343605	Rt1c	17	5177	7.0	6.5	6.8	2.2	5206	chr3R	5338399	intron	mtd -	chr3R	5341002	intron	mtd -	chr3R	5343605	intron	mtd -	chr3R_17_5340001	chr3R_5340001	Samar-Dw1
1097	chr3R	5445968	5445993	chr3R	5452428	5452453	Burdock	5	6460	2.0	3.0	2.5	1.4	6485	chr3R	5445968	intron	CG14669 +	chr3R	5449210	intron	CG14669 +	chr3R	5452453	intron	CG14669 +	chr3R_5_5445001	chr3R_5445001	Samar-Dw1
1099	chr3R	5747025	5747032	chr3R	5753216	5753223	diver	4	6191	3.5	1.0	2.2	1.2	6198	chr3R	5747025	intergenic	Madm +	chr3R	5750124	intergenic	not near genes	chr3R	5753223	intergenic	CG2091 -	chr3R_4_5750001	chr3R_5750001	Samar-Dw1
1100	chr3R	5809114	5809133	chr3R	5809355	5809374	pogo	6	241	3.5	1.0	2.2	1.9	260	chr3R	5809114	3` UTR	CG11000 +	chr3R	5809244	3` UTR	CG11000 +	chr3R	5809374	3` UTR	CG11000 +	chr3R_6_5805001	chr3R_5805001	Samar-Dw1
1101	chr3R	5822384	5822412	chr3R	5823551	5823579	1360	8	1167	1.5	5.5	3.5	1.8	1195	chr3R	5822384	3` UTR	CG2023 -	chr3R	5822982	3` UTR	CG2023 -	chr3R	5823579	3` UTR	CG2023 -	chr3R_8_5820001	chr3R_5820001	Samar-Dw1
1102	chr3R	5927560	5927590	chr3R	5927800	5927830	pogo	12	240	4.5	4.0	4.2	2.3	270	chr3R	5927560	intron	CG34113 -	chr3R	5927695	intron	CG34113 -	chr3R	5927830	intron	CG34113 -	chr3R_12_5925001	chr3R_5925001	Samar-Dw1
1105	chr3R	6015961	6015989	chr3R	6024442	6024470	Tirant	10	8481	6.0	3.0	4.5	1.8	8509	chr3R	6015961	intergenic	not near genes	chr3R	6020216	intergenic	not near genes	chr3R	6024470	intergenic	not near genes	chr3R_10_6020001	chr3R_6020001	Samar-Dw1
1110	chr3R	6158509	6158542	chr3R	6167092	6167125	Tirant	9	8583	7.5	6.0	6.8	1.2	8616	chr3R	6158509	intergenic	not near genes	chr3R	6162817	intergenic	not near genes	chr3R	6167125	intergenic	CG1077 +	chr3R_9_6160001	chr3R_6160001	Samar-Dw1
1111	chr3R	6206282	6206318	chr3R	6206499	6206535	BS	10	217	5.5	4.0	4.8	1.7	253	chr3R	6206282	exon	Osi24 +	chr3R	6206408	intron	Osi24 +	chr3R	6206535	intron	Osi24 +	chr3R_10_6205001	chr3R_6205001	Samar-Dw1
1124	chr3R	6737502	6737532	chr3R	6739289	6739319	Doc	16	1787	2.5	3.0	2.8	4.2	1817	chr3R	6737502	intron	pb -	chr3R	6738410	intron	pb -	chr3R	6739319	intron	pb -	chr3R_16_6735001	chr3R_6735001	Samar-Dw1
1143	chr3R	7694576	7694608	chr3R	7713637	7713669	invader3	6	19061	0.5	1.0	0.8	3.3	19093	chr3R	7694576	3` UTR	Nlg1 +	chr3R	7704122	intergenic	not near genes	chr3R	7713669	intergenic	not near genes	chr3R_6_7700001	chr3R_7700001	Samar-Dw1
1145	chr3R	7729464	7729497	chr3R	7737402	7737435	Stalker2	16	7938	4.5	7.0	5.8	2.4	7971	chr3R	7729464	intergenic	not near genes	chr3R	7733450	intergenic	not near genes	chr3R	7737435	intergenic	not near genes	chr3R_16_7730001	chr3R_7730001	Samar-Dw1
1147	chr3R	7849640	7849672	chr3R	7850807	7850839	1360	12	1167	4.0	3.0	3.5	2.7	1199	chr3R	7849640	intron	CG34384 +	chr3R	7850240	intron	CG34384 +	chr3R	7850839	intron	CG34384 +	chr3R_12_7850001	chr3R_7850001	Samar-Dw1
1152	chr3R	8094408	8094417	chr3R	8099713	8099722	Transpac	4	5305	5.0	3.5	4.2	0.8	5314	chr3R	8094408	intron	CG7900 +	chr3R	8097065	intron	CG7900 +	chr3R	8099722	intron	CG7900 +	chr3R_4_8095001	chr3R_8095001	Samar-Dw1
1154	chr3R	8207554	8207587	chr3R	8208399	8208432	F-element	14	845	0.5	4.0	2.2	4.4	878	chr3R	8207554	intergenic	not near genes	chr3R	8207993	intergenic	not near genes	chr3R	8208432	intergenic	not near genes	chr3R_14_8205001	chr3R_8205001	Samar-Dw1
1159	chr3R	8403011	8403041	chr3R	8412177	8412207	roo	15	9166	4.0	5.5	4.8	2.6	9196	chr3R	8403011	intron	CG45263 -	chr3R	8407609	intron	CG45263 -	chr3R	8412207	intron	CG45263 -	chr3R_15_8405001	chr3R_8405001	Samar-Dw1
1161	chr3R	8570476	8570509	chr3R	8575112	8575145	HMS-Beagle	8	4636	2.0	2.0	2.0	2.7	4669	chr3R	8570476	intergenic	not near genes	chr3R	8572810	intergenic	not near genes	chr3R	8575145	intergenic	not near genes	chr3R_8_8570001	chr3R_8570001	Samar-Dw1
1162	chr3R	8601771	8601796	chr3R	8610924	8610949	roo	5	9153	2.0	1.5	1.8	1.8	9178	chr3R	8601771	intron	5-HT2B +	chr3R	8606360	intron	5-HT2B +	chr3R	8610949	intron	5-HT2B +	chr3R_5_8605001	chr3R_8605001	Samar-Dw1
1168	chr3R	9278778	9278806	chr3R	9284038	9284066	Rt1a	12	5259	4.0	0.5	2.2	3.8	5288	chr3R	9278778	intergenic	not near genes	chr3R	9281422	intergenic	not near genes	chr3R	9284066	intergenic	not near genes	chr3R_12_9280001	chr3R_9280001	Samar-Dw1
1170	chr3R	9319573	9319609	chr3R	9320008	9320044	jockey	13	435	2.5	3.0	2.8	3.4	471	chr3R	9319573	intron	CG8861 -	chr3R	9319808	intron	CG8861 -	chr3R	9320044	intron	CG8861 -	chr3R_13_9315001	chr3R_9315001	Samar-Dw1
1171	chr3R	9361824	9361841	chr3R	9362065	9362082	pogo	6	241	0.0	0.5	0.2	5.0	258	chr3R	9361824	3` UTR	CG45050 +	chr3R	9361953	3` UTR	CG45050 +	chr3R	9362082	3` UTR	CG45050 +	chr3R_6_9360001	chr3R_9360001	Samar-Dw1
1178	chr3R	10231781	10231806	chr3R	10237358	10237383	mdg3	9	5577	1.5	4.0	2.8	2.4	5602	chr3R	10231781	intron	CG42795 +	chr3R	10234582	intron	CG42795 +	chr3R	10237383	intron	CG42795 +	chr3R_9_10230001	chr3R_10230001	Samar-Dw1
1194	chr3R	10957867	10957882	chr3R	10963252	10963267	Rt1c	6	5385	11.0	2.0	6.5	0.8	5400	chr3R	10957867	intergenic	not near genes	chr3R	10960567	intergenic	not near genes	chr3R	10963267	intergenic	not near genes	chr3R_6_10960001	chr3R_10960001	Samar-Dw1
1205	chr3R	11841059	11841095	chr3R	11846250	11846286	BS	10	5191	3.5	2.0	2.8	2.6	5227	chr3R	11841059	intron	CG6959 -	chr3R	11843672	intron	CG6959 -	chr3R	11846286	intron	CG6959 -	chr3R_10_11840001	chr3R_11840001	Samar-Dw1
1228	chr3R	12920155	12920185	chr3R	12925358	12925388	copia	9	5203	4.0	1.5	2.8	2.4	5233	chr3R	12920155	intron	beat-Vb +	chr3R	12922772	intron	beat-Vb +	chr3R	12925388	intron	beat-Vb +	chr3R_9_12920001	chr3R_12920001	Samar-Dw1
1232	chr3R	13135826	13135854	chr3R	13138001	13138029	pogo	6	2175	4.5	1.0	2.8	1.6	2203	chr3R	13135826	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136928	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138029	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_6_13135001	chr3R_13135001	Samar-Dw1
1233	chr3R	13143041	13143066	chr3R	13148616	13148641	mdg3	11	5575	4.0	3.5	3.8	2.3	5600	chr3R	13143041	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145841	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148641	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_11_13145001	chr3R_13145001	Samar-Dw1
1247	chr3R	14194427	14194459	chr3R	14203576	14203608	roo	10	9149	2.5	3.0	2.8	2.6	9181	chr3R	14194427	intron	Dop1R1 -	chr3R	14199018	intron	Dop1R1 -	chr3R	14203608	intron	Dop1R1 -	chr3R_10_14195001	chr3R_14195001	Samar-Dw1
1250	chr3R	15041433	15041454	chr3R	15045201	15045222	Doc	4	3768	0.0	2.0	1.0	2.0	3789	chr3R	15041433	intergenic	not near genes	chr3R	15043328	intergenic	not near genes	chr3R	15045222	intergenic	not near genes	chr3R_4_15040001	chr3R_15040001	Samar-Dw1
1251	chr3R	15079813	15079833	chr3R	15080054	15080074	pogo	7	241	2.5	5.0	3.8	1.5	261	chr3R	15079813	3` UTR	CG6966 -	chr3R	15079944	3` UTR	CG6966 -	chr3R	15080074	3` UTR	CG6966 -	chr3R_7_15075001	chr3R_15075001	Samar-Dw1
1254	chr3R	15162545	15162561	chr3R	15167313	15167329	F-element	7	4768	6.5	1.0	3.8	1.5	4784	chr3R	15162545	intron	Gyc88E +	chr3R	15164937	intron	Gyc88E +	chr3R	15167329	intron	Gyc88E +	chr3R_7_15160001	chr3R_15160001	Samar-Dw1
1256	chr3R	15601163	15601194	chr3R	15608685	15608716	412	14	7522	5.5	2.5	4.0	2.8	7553	chr3R	15601163	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608716	intergenic	not near genes	chr3R_14_15600001	chr3R_15600001	Samar-Dw1
1257	chr3R	15618733	15618763	chr3R	15626207	15626237	blood	8	7474	3.5	4.0	3.8	1.7	7504	chr3R	15618733	intergenic	not near genes	chr3R	15622485	intergenic	not near genes	chr3R	15626237	intergenic	not near genes	chr3R_8_15620001	chr3R_15620001	Samar-Dw1
1270	chr3R	16756318	16756349	chr3R	16762509	16762540	diver	6	6191	2.5	1.5	2.0	2.0	6222	chr3R	16756318	intron	bxd -	chr3R	16759429	intron	bxd -	chr3R	16762540	intron	bxd -	chr3R_6_16755001	chr3R_16755001	Samar-Dw1
1277	chr3R	17294674	17294702	chr3R	17295102	17295130	BS	5	428	4.0	2.5	3.2	1.2	456	chr3R	17294674	intergenic	not near genes	chr3R	17294902	intergenic	not near genes	chr3R	17295130	intergenic	not near genes	chr3R_5_17290001	chr3R_17290001	Samar-Dw1
1280	chr3R	17346690	17346712	chr3R	17348253	17348275	F-element	4	1563	1.5	3.0	2.2	1.2	1585	chr3R	17346690	intron	beat-IIa -	chr3R	17347482	intron	beat-IIa -	chr3R	17348275	intron	beat-IIa -	chr3R_4_17345001	chr3R_17345001	Samar-Dw1
1288	chr3R	17638328	17638351	chr3R	17638814	17638837	roo	6	486	2.0	1.0	1.5	2.4	509	chr3R	17638328	intron	CG43175 +	chr3R	17638582	intron	CG43175 +	chr3R	17638837	intron,intron	CG43175 +,CR45222 +	chr3R_6_17635001	chr3R_17635001	Samar-Dw1
1291	chr3R	17925854	17925887	chr3R	17927321	17927354	hobo	12	1467	10.0	6.5	8.2	1.3	1500	chr3R	17925854	intron	cpo +	chr3R	17926604	intron	cpo +	chr3R	17927354	intron	cpo +	chr3R_12_17925001	chr3R_17925001	Samar-Dw1
1292	chr3R	18032784	18032804	chr3R	18040457	18040477	opus	5	7673	0.0	4.0	2.0	1.7	7693	chr3R	18032784	intergenic	not near genes	chr3R	18036630	intergenic	not near genes	chr3R	18040477	intergenic	not near genes	chr3R_5_18035001	chr3R_18035001	Samar-Dw1
1293	chr3R	18061586	18061611	chr3R	18063154	18063179	F-element	7	1568	1.5	2.0	1.8	2.5	1593	chr3R	18061586	intergenic	not near genes	chr3R	18062382	intergenic	not near genes	chr3R	18063179	intergenic	not near genes	chr3R_7_18060001	chr3R_18060001	Samar-Dw1
1296	chr3R	18606508	18606532	chr3R	18610740	18610764	F-element	5	4232	2.0	2.5	2.2	1.6	4256	chr3R	18606508	intron,intron	qin +,CG14304 -	chr3R	18608636	intron,intron	qin +,CG14304 -	chr3R	18610764	intron,intron	qin +,CG14304 -	chr3R_5_18605001	chr3R_18605001	Samar-Dw1
1301	chr3R	19193007	19193013	chr3R	19197311	19197317	F-element	5	4304	0.0	6.0	3.0	1.2	4310	chr3R	19193007	intron	CG31475 +	chr3R	19195162	intron	CG31475 +	chr3R	19197317	intron	CG31475 +	chr3R_5_19195001	chr3R_19195001	Samar-Dw1
1319	chr3R	20156691	20156707	chr3R	20165861	20165877	roo	4	9170	3.0	2.0	2.5	1.1	9186	chr3R	20156691	intergenic	not near genes	chr3R	20161284	intergenic	not near genes	chr3R	20165877	intergenic	not near genes	chr3R_4_20160001	chr3R_20160001	Samar-Dw1
1323	chr3R	20266516	20266541	chr3R	20272987	20273012	Burdock	4	6471	1.0	1.5	1.2	1.8	6496	chr3R	20266516	intron	cic +	chr3R	20269764	intron	cic +	chr3R	20273012	intron	cic +	chr3R_4_20265001	chr3R_20265001	Samar-Dw1
1324	chr3R	20330999	20331030	chr3R	20331485	20331516	roo	7	486	3.5	2.0	2.8	1.8	517	chr3R	20330999	intergenic	Sirt2 +	chr3R	20331258	intergenic	Sirt2 +	chr3R	20331516	intergenic	not near genes	chr3R_7_20330001	chr3R_20330001	Samar-Dw1
1325	chr3R	20506588	20506604	chr3R	20507391	20507407	BS	4	803	3.5	5.5	4.5	0.7	819	chr3R	20506588	intergenic	Or92a +	chr3R	20506998	intergenic	CG4288 -	chr3R	20507407	3` UTR	CG4288 -	chr3R_4_20505001	chr3R_20505001	Samar-Dw1
1330	chr3R	20854471	20854515	chr3R	20859266	20859305	Doc	8	4791	0.5	3.5	2.0	2.7	4834	chr3R	20854471	intron	Ir93a -	chr3R	20856888	intron	Ir93a -	chr3R	20859305	exon	Ir93a -	chr3R_8_20855001	chr3R_20855001	Samar-Dw1
1334	chr3R	21141675	21141705	chr3R	21150156	21150186	Tirant	6	8480	1.0	5.0	3.0	1.5	8511	chr3R	21141675	intron	SNF4Agamma +	chr3R	21145930	intron	SNF4Agamma +	chr3R	21150186	intron	SNF4Agamma +	chr3R_6_21145001	chr3R_21145001	Samar-Dw1
1345	chr3R	21761119	21761155	chr3R	21768511	21768547	mdg1	14	7392	5.5	4.0	4.8	2.4	7428	chr3R	21761119	exon	CG42335 +	chr3R	21764833	intron	CG42335 +	chr3R	21768547	exon	CG42335 +	chr3R_14_21760001	chr3R_21760001	Samar-Dw1
1362	chr3R	22234684	22234715	chr3R	22236003	22236034	pogo	14	1319	2.0	2.5	2.2	4.4	1350	chr3R	22234684	intron	SKIP +	chr3R	22235359	intron	SKIP +	chr3R	22236034	intron	SKIP +	chr3R_14_22235001	chr3R_22235001	Samar-Dw1
1367	chr3R	22450540	22450574	chr3R	22453180	22453209	NOF	8	2639	2.0	2.5	2.2	2.5	2669	chr3R	22450540	intron	CG34376 +	chr3R	22451874	intron	CG34376 +	chr3R	22453209	intron	CG34376 +	chr3R_8_22450001	chr3R_22450001	Samar-Dw1
1373	chr3R	22881190	22881205	chr3R	22884896	22884911	Doc	7	3706	1.5	2.0	1.8	2.5	3721	chr3R	22881190	intergenic	not near genes	chr3R	22883050	intergenic	not near genes	chr3R	22884911	intergenic	not near genes	chr3R_7_22880001	chr3R_22880001	Samar-Dw1
1377	chr3R	23558399	23558429	chr3R	23560180	23560210	Bari1	5	1781	1.5	3.5	2.5	1.4	1811	chr3R	23558399	intron	beat-IV +	chr3R	23559304	intron	beat-IV +	chr3R	23560210	intron	beat-IV +	chr3R_5_23555001	chr3R_23555001	Samar-Dw1
1379	chr3R	23684695	23684729	chr3R	23685181	23685215	roo	16	486	5.0	10.0	7.5	1.9	520	chr3R	23684695	exon	CG18754 +	chr3R	23684955	intron	CG18754 +	chr3R	23685215	exon	CG18754 +	chr3R_16_23680001	chr3R_23680001	Samar-Dw1
1381	chr3R	23835404	23835425	chr3R	23844554	23844575	roo	4	9150	2.5	0.5	1.5	1.6	9171	chr3R	23835404	intron	CG34355 +	chr3R	23839990	intron	CG34355 +	chr3R	23844575	intron	CG34355 +	chr3R_4_23835001	chr3R_23835001	Samar-Dw1
1387	chr3R	24072087	24072110	chr3R	24072525	24072536	jockey	10	437	9.0	0.0	4.5	1.8	449	chr3R	24072087	intron	4EHP -	chr3R	24072312	intron	4EHP -	chr3R	24072536	intron	4EHP -	chr3R_10_24070001	chr3R_24070001	Samar-Dw1
1388	chr3R	24076916	24076923	chr3R	24078383	24078390	hobo	6	1467	6.0	2.5	4.2	1.2	1474	chr3R	24076916	intron	4EHP -	chr3R	24077653	intron	4EHP -	chr3R	24078390	intron	4EHP -	chr3R_6_24075001	chr3R_24075001	Samar-Dw1
1391	chr3R	24730090	24730109	chr3R	24732468	24732487	Doc	6	2378	3.5	0.5	2.0	2.0	2397	chr3R	24730090	intron	tok +	chr3R	24731288	intron	tok +	chr3R	24732487	intron	tok +	chr3R_6_24730001	chr3R_24730001	Samar-Dw1
1394	chr3R	24927130	24927148	chr3R	24931921	24931939	Doc	9	4791	3.0	3.5	3.2	2.1	4809	chr3R	24927130	intergenic	Trf4-2 +	chr3R	24929534	intergenic	not near genes	chr3R	24931939	intergenic	CG11771 +	chr3R_9_24925001	chr3R_24925001	Samar-Dw1
1397	chr3R	25832695	25832724	chr3R	25841877	25841906	roo	11	9182	5.0	6.5	5.8	1.6	9211	chr3R	25832695	exon	alpha4GT2 +	chr3R	25837300	intron	alpha4GT2 +	chr3R	25841906	exon	alpha4GT2 +	chr3R_11_25835001	chr3R_25835001	Samar-Dw1
1406	chr3R	26376322	26376358	chr3R	26385482	26385518	roo	16	9160	4.0	0.0	2.0	5.3	9196	chr3R	26376322	intergenic	not near genes	chr3R	26380920	intergenic	not near genes	chr3R	26385518	intergenic	not near genes	chr3R_16_26380001	chr3R_26380001	Samar-Dw1
1412	chr3R	26558326	26558357	chr3R	26565639	26565669	Stalker4	6	7312	1.5	5.0	3.2	1.4	7343	chr3R	26558326	intron	scrib +	chr3R	26561998	intron	scrib +	chr3R	26565669	intron	scrib +	chr3R_6_26560001	chr3R_26560001	Samar-Dw1
1421	chr3R	27007407	27007437	chr3R	27016542	27016572	roo	9	9135	1.5	2.0	1.8	3.2	9165	chr3R	27007407	intron	RYa-R +	chr3R	27011990	intron	RYa-R +	chr3R	27016572	intron	RYa-R +	chr3R_9_27010001	chr3R_27010001	Samar-Dw1
1425	chr3R	27140518	27140548	chr3R	27148128	27148158	412	16	7610	4.0	3.5	3.8	3.3	7640	chr3R	27140518	intron	CG6051 -	chr3R	27144338	intron	CG6051 -	chr3R	27148158	intron	CG6051 -	chr3R_16_27140001	chr3R_27140001	Samar-Dw1
1429	chr3R	27342795	27342820	chr3R	27351376	27351401	Tirant	6	8581	1.0	4.0	2.5	1.7	8606	chr3R	27342795	intron	CG42534 +	chr3R	27347098	intron	CG42534 +	chr3R	27351401	intron	CG42534 +	chr3R_6_27345001	chr3R_27345001	Samar-Dw1
1435	chr3R	27521163	27521191	chr3R	27530372	27530400	roo	8	9209	1.5	1.0	1.2	3.6	9237	chr3R	27521163	intron	CG12885 +	chr3R	27525782	intron	CG12885 +	chr3R	27530400	intron	CG12885 +	chr3R_8_27525001	chr3R_27525001	Samar-Dw1
1437	chr3R	27725565	27725596	chr3R	27731007	27731038	I-element	7	5442	2.0	1.5	1.8	2.5	5473	chr3R	27725565	intergenic	not near genes	chr3R	27728302	intergenic	not near genes	chr3R	27731038	intergenic	not near genes	chr3R_7_27725001	chr3R_27725001	Samar-Dw1
1441	chr3R	27862969	27862979	chr3R	27868274	27868284	Transpac	4	5305	1.0	4.0	2.5	1.1	5315	chr3R	27862969	intron	CG34353 -	chr3R	27865626	intron	CG34353 -	chr3R	27868284	intron	CG34353 -	chr3R_4_27865001	chr3R_27865001	Samar-Dw1
1443	chr3R	27875705	27875730	chr3R	27882760	27882785	297	9	7055	3.0	4.0	3.5	2.0	7080	chr3R	27875705	intron	CG34353 -	chr3R	27879245	intron	CG34353 -	chr3R	27882785	intron	CG34353 -	chr3R_9_27875001	chr3R_27875001	Samar-Dw1
1447	chr3R	28068498	28068527	chr3R	28073940	28073969	I-element	9	5442	2.0	4.0	3.0	2.2	5471	chr3R	28068498	intron	CG34362 +	chr3R	28071234	intron	CG34362 +	chr3R	28073969	intron	CG34362 +	chr3R_9_28070001	chr3R_28070001	Samar-Dw1
1448	chr3R	28173677	28173686	chr3R	28181107	28181116	mdg1	4	7430	1.0	4.5	2.8	1.1	7439	chr3R	28173677	intron	CG34354 +	chr3R	28177396	intron	CG34354 +	chr3R	28181116	intron	CG34354 +	chr3R_4_28175001	chr3R_28175001	Samar-Dw1
1449	chr3R	28253344	28253366	chr3R	28255854	28255876	jockey	9	2510	5.0	2.5	3.8	1.9	2532	chr3R	28253344	intergenic	not near genes	chr3R	28254610	intergenic	not near genes	chr3R	28255876	intergenic	not near genes	chr3R_9_28250001	chr3R_28250001	Samar-Dw1
1450	chr3R	28302106	28302113	chr3R	28302548	28302555	jockey	5	442	2.5	3.0	2.8	1.3	449	chr3R	28302106	intergenic	not near genes	chr3R	28302330	intergenic	not near genes	chr3R	28302555	intergenic	not near genes	chr3R_5_28300001	chr3R_28300001	Samar-Dw1
1465	chr3R	28758285	28758312	chr3R	28763902	28763929	roo	5	5617	0.5	1.0	0.8	2.8	5644	chr3R	28758285	intergenic	aqrs -	chr3R	28761107	intergenic	not near genes	chr3R	28763929	intergenic	not near genes	chr3R_5_28760001	chr3R_28760001	Samar-Dw1
1473	chr3R	29079379	29079412	chr3R	29080758	29080791	NOF	10	1379	1.5	5.0	3.2	2.4	1412	chr3R	29079379	intron	CG11873 +	chr3R	29080085	intron	CG11873 +	chr3R	29080791	intron	CG11873 +	chr3R_10_29080001	chr3R_29080001	Samar-Dw1
1479	chr3R	29319824	29319858	chr3R	29320143	29320177	jockey	4	319	0.0	2.0	1.0	2.0	353	chr3R	29319824	intergenic	Cnx99A -	chr3R	29320000	intergenic	Cnx99A -	chr3R	29320177	intergenic	not near genes	chr3R_4_29320001	chr3R_29320001	Samar-Dw1
1480	chr3R	29406616	29406646	chr3R	29407902	29407932	jockey	18	1286	8.0	4.0	6.0	2.6	1316	chr3R	29406616	intron	Ptp99A +	chr3R	29407274	intron	Ptp99A +	chr3R	29407932	intron	Ptp99A +	chr3R_18_29405001	chr3R_29405001	Samar-Dw1
1492	chr3R	29760360	29760389	chr3R	29761561	29761590	pogo	4	1201	3.5	1.5	2.5	1.1	1230	chr3R	29760360	intergenic	not near genes	chr3R	29760975	intergenic	not near genes	chr3R	29761590	intergenic	not near genes	chr3R_4_29760001	chr3R_29760001	Samar-Dw1
1495	chr3R	29882025	29882052	chr3R	29891182	29891209	roo	9	9157	3.0	1.5	2.2	2.8	9184	chr3R	29882025	intron	CG31038 +	chr3R	29886617	intron	CG31038 +	chr3R	29891209	intron	CG31038 +	chr3R_9_29885001	chr3R_29885001	Samar-Dw1
1499	chr3R	30084851	30084872	chr3R	30086318	30086339	hobo	8	1467	3.5	4.0	3.8	1.7	1488	chr3R	30084851	intron	sima +	chr3R	30085595	intron	sima +	chr3R	30086339	intron	sima +	chr3R_8_30085001	chr3R_30085001	Samar-Dw1
1501	chr3R	30238759	30238795	chr3R	30239923	30239959	1360	9	1164	1.5	1.5	1.5	3.6	1200	chr3R	30238759	intergenic	not near genes	chr3R	30239359	intergenic	not near genes	chr3R	30239959	intergenic	not near genes	chr3R_9_30235001	chr3R_30235001	Samar-Dw1
1505	chr3R	30396215	30396244	chr3R	30404481	30404510	roo	6	8266	4.0	5.5	4.8	1.0	8295	chr3R	30396215	intergenic	not near genes	chr3R	30400362	intergenic	not near genes	chr3R	30404510	5` UTR	CR45570 +	chr3R_6_30400001	chr3R_30400001	Samar-Dw1
1507	chr3R	30480472	30480513	chr3R	30482940	30482981	jockey	22	2468	4.0	3.5	3.8	4.6	2509	chr3R	30480472	intron	PH4alphaEFB +	chr3R	30481726	intron	PH4alphaEFB +	chr3R	30482981	intron	PH4alphaEFB +	chr3R_22_30480001	chr3R_30480001	Samar-Dw1
1512	chr3R	30679541	30679551	chr3R	30687010	30687020	blood	5	7469	0.0	5.0	2.5	1.4	7479	chr3R	30679541	intergenic	not near genes	chr3R	30683280	intergenic	not near genes	chr3R	30687020	intergenic	not near genes	chr3R_5_30680001	chr3R_30680001	Samar-Dw1
1514	chr3R	30818822	30818842	chr3R	30820387	30820407	1360	4	1565	2.5	1.5	2.0	1.3	1585	chr3R	30818822	intron	cindr +	chr3R	30819614	intron	cindr +	chr3R	30820407	intron	cindr +	chr3R_4_30815001	chr3R_30815001	Samar-Dw1
1518	chr3R	31074229	31074252	chr3R	31081827	31081850	springer	7	7598	1.5	3.5	2.5	2.0	7621	chr3R	31074229	intron	Sox100B +	chr3R	31078040	intron	Sox100B +	chr3R	31081850	intron	Sox100B +	chr3R_7_31075001	chr3R_31075001	Samar-Dw1
1521	chr3R	31279374	31279409	chr3R	31285565	31285600	diver	15	6191	3.5	3.5	3.5	3.3	6226	chr3R	31279374	intergenic	not near genes	chr3R	31282487	intergenic	not near genes	chr3R	31285600	intergenic	not near genes	chr3R_15_31280001	chr3R_31280001	Samar-Dw1
1523	chr3R	31413087	31413123	chr3R	31418287	31418323	copia	7	5200	2.5	0.0	1.2	3.2	5236	chr3R	31413087	intron	Gprk2 +	chr3R	31415705	intron	Gprk2 +	chr3R	31418323	intron	Gprk2 +	chr3R_7_31415001	chr3R_31415001	Samar-Dw1
1532	chr3R	31691533	31691564	chr3R	31696299	31696330	Doc	10	4766	5.0	2.5	3.8	2.1	4797	chr3R	31691533	intergenic	not near genes	chr3R	31693932	intergenic	not near genes	chr3R	31696330	intergenic	not near genes	chr3R_10_31690001	chr3R_31690001	Samar-Dw1
1538	chr3R	31998002	31998025	chr3R	32005472	32005495	blood	9	7470	0.5	2.0	1.2	4.1	7493	chr3R	31998002	intron	heph -	chr3R	32001748	intron	heph -	chr3R	32005495	intron	heph -	chr3R_9_32000001	chr3R_32000001	Samar-Dw1
1540	chr4	671603	671633	chr4	680186	680216	Tirant	10	8583	5.0	5.5	5.2	1.6	8613	chr4	671603	intron	CG11360 +	chr4	675910	intron	CG11360 +	chr4	680216	intron	CG11360 +	chr4_10_675001	chr4_675001	Samar-Dw1
1543	chrX	295861	295880	chrX	303481	303500	412	4	7620	1.5	0.5	1.0	2.0	7639	chrX	295861	intron	CG3777 +	chrX	299680	intron	CG3777 +	chrX	303500	intron	CG3777 +	chrX_4_295001	chrX_295001	Samar-Dw1
1544	chrX	318470	318498	chrX	323556	323584	flea	6	5086	3.0	3.0	3.0	1.5	5114	chrX	318470	intron,intron	CG3777 +,CG32816 -	chrX	321027	intron,intron	CG3777 +,CG32816 -	chrX	323584	intron,intron	CG3777 +,CG32816 -	chrX_6_320001	chrX_320001	Samar-Dw1
1545	chrX	428423	428443	chrX	434608	434628	3S18	5	6185	5.0	1.0	3.0	1.2	6205	chrX	428423	intron	CG32816 -	chrX	431526	intron	CG32816 -	chrX	434628	intron	CG32816 -	chrX_5_430001	chrX_430001	Samar-Dw1
1546	chrX	551420	551452	chrX	558982	559014	412	14	7562	5.0	3.0	4.0	2.8	7594	chrX	551420	intron	Appl +	chrX	555217	intron	Appl +	chrX	559014	intron	Appl +	chrX_14_555001	chrX_555001	Samar-Dw1
1548	chrX	812265	812299	chrX	817896	817930	297	7	5631	2.0	1.5	1.8	2.5	5665	chrX	812265	intron	CG43867 -	chrX	815098	intron	CG43867 -	chrX	817930	intron	CG43867 -	chrX_7_815001	chrX_815001	Samar-Dw1
1549	chrX	906708	906720	chrX	908497	908509	S-element	8	1789	3.5	8.5	6.0	1.1	1801	chrX	906708	intron	CG43867 -	chrX	907608	intron	CG43867 -	chrX	908509	intron	CG43867 -	chrX_8_905001	chrX_905001	Samar-Dw1
1554	chrX	1357776	1357803	chrX	1367946	1367973	Doc	5	10170	4.0	1.0	2.5	1.4	10197	chrX	1357776	intergenic	png -	chrX	1362874	intergenic	not near genes	chrX	1367973	intergenic	not near genes	chrX_5_1360001	chrX_1360001	Samar-Dw1
1556	chrX	1518039	1518070	chrX	1523441	1523472	jockey	6	5402	1.5	4.0	2.8	1.6	5433	chrX	1518039	intergenic	inc +	chrX	1520756	intergenic	not near genes	chrX	1523472	intergenic	not near genes	chrX_6_1520001	chrX_1520001	Samar-Dw1
1557	chrX	1627977	1628002	chrX	1635445	1635470	gtwin	16	7468	3.0	3.5	3.2	3.8	7493	chrX	1627977	intron,intron	Mur2B -,br +	chrX	1631724	intron,intron	Mur2B -,br +	chrX	1635470	intron,intron	Mur2B -,br +	chrX_16_1630001	chrX_1630001	Samar-Dw1
1559	chrX	1930545	1930567	chrX	1938116	1938138	opus	7	7571	2.0	1.5	1.8	2.5	7593	chrX	1930545	intergenic	CG11596 +	chrX	1934342	intergenic	not near genes	chrX	1938138	3` UTR	CG3857 -	chrX_7_1930001	chrX_1930001	Samar-Dw1
1560	chrX	1954886	1954919	chrX	1962826	1962859	Stalker2	12	7940	3.0	5.5	4.2	2.3	7973	chrX	1954886	intron	Hr4 +	chrX	1958872	intron	Hr4 +	chrX	1962859	intron	Hr4 +	chrX_12_1955001	chrX_1955001	Samar-Dw1
1563	chrX	2399836	2399859	chrX	2408189	2408212	roo	7	8353	6.0	0.0	3.0	1.8	8376	chrX	2399836	intergenic	not near genes	chrX	2404024	intergenic	not near genes	chrX	2408212	intergenic	not near genes	chrX_7_2400001	chrX_2400001	Samar-Dw1
1568	chrX	2844904	2844931	chrX	2852314	2852341	mdg1	4	7410	0.5	0.5	0.5	2.7	7437	chrX	2844904	intron	kirre +	chrX	2848622	intron	kirre +	chrX	2852341	intron	kirre +	chrX_4_2845001	chrX_2845001	Samar-Dw1
1570	chrX	3075636	3075645	chrX	3080943	3080952	Transpac	4	5307	0.0	0.0	0.0	4.0	5316	chrX	3075636	intron	kirre +	chrX	3078294	intron	kirre +	chrX	3080952	intron	kirre +	chrX_4_3075001	chrX_3075001	Samar-Dw1
1576	chrX	3597552	3597578	chrX	3619720	3619746	roo	5	22168	2.5	1.5	2.0	1.7	22194	chrX	3597552	intron	AstA-R1 +	chrX	3608649	intron	AstA-R1 +	chrX	3619746	intron	AstA-R1 +	chrX_5_3605001	chrX_3605001	Samar-Dw1
1582	chrX	3986864	3986896	chrX	3994497	3994529	412	9	7633	1.0	2.0	1.5	3.6	7665	chrX	3986864	intergenic	not near genes	chrX	3990696	intergenic	not near genes	chrX	3994529	intergenic	not near genes	chrX_9_3990001	chrX_3990001	Samar-Dw1
1590	chrX	4763253	4763282	chrX	4763741	4763770	Stalker4	6	488	2.0	2.5	2.2	1.9	517	chrX	4763253	intergenic	not near genes	chrX	4763512	intergenic	not near genes	chrX	4763770	intergenic	not near genes	chrX_6_4760001	chrX_4760001	Samar-Dw1
1592	chrX	4827974	4828001	chrX	4835345	4835372	Stalker4	8	7371	2.5	5.5	4.0	1.6	7398	chrX	4827974	intergenic	not near genes	chrX	4831673	intergenic	not near genes	chrX	4835372	intergenic	not near genes	chrX_8_4830001	chrX_4830001	Samar-Dw1
1593	chrX	4990052	4990077	chrX	4997266	4997291	roo	7	7214	0.0	1.5	0.8	3.9	7239	chrX	4990052	intron	CR44833 -	chrX	4993672	intron	CR44833 -	chrX	4997291	intron	CR44833 -	chrX_7_4990001	chrX_4990001	Samar-Dw1
1599	chrX	5338719	5338737	chrX	5339972	5339990	jockey	5	1253	1.0	7.5	4.2	1.0	1271	chrX	5338719	intergenic	not near genes	chrX	5339354	intergenic	not near genes	chrX	5339990	intergenic	SK +	chrX_5_5335001	chrX_5335001	Samar-Dw1
1605	chrX	5883823	5883834	chrX	5884064	5884075	pogo	6	241	1.0	6.0	3.5	1.3	252	chrX	5883823	intron	CR45668 -	chrX	5883949	intron	CR45668 -	chrX	5884075	intron	CR45668 -	chrX_6_5880001	chrX_5880001	Samar-Dw1
1606	chrX	6171581	6171614	chrX	6179014	6179047	Quasimodo	5	7433	3.0	1.0	2.0	1.7	7466	chrX	6171581	intron	Ca-alpha1T -	chrX	6175314	intron	Ca-alpha1T -	chrX	6179047	intron	Ca-alpha1T -	chrX_5_6175001	chrX_6175001	Samar-Dw1
1610	chrX	6392868	6392901	chrX	6397633	6397666	Doc	14	4765	8.0	3.5	5.8	2.1	4798	chrX	6392868	intergenic	not near genes	chrX	6395267	intergenic	not near genes	chrX	6397666	intergenic	not near genes	chrX_14_6395001	chrX_6395001	Samar-Dw1
1613	chrX	6562817	6562849	chrX	6571299	6571331	Tirant	11	8482	2.5	4.5	3.5	2.4	8514	chrX	6562817	intron	CG34417 +	chrX	6567074	intron	CG34417 +	chrX	6571331	intron	CG34417 +	chrX_11_6565001	chrX_6565001	Samar-Dw1
1616	chrX	7023600	7023631	chrX	7030990	7031021	Tabor	9	7390	6.0	3.5	4.8	1.6	7421	chrX	7023600	intron	CG12541 -	chrX	7027310	intron	CG12541 -	chrX	7031021	intron	CG12541 -	chrX_9_7025001	chrX_7025001	Samar-Dw1
1619	chrX	7125243	7125277	chrX	7134402	7134436	roo	11	9159	0.0	2.0	1.0	5.5	9193	chrX	7125243	intergenic	not near genes	chrX	7129840	intergenic	not near genes	chrX	7134436	intergenic	not near genes	chrX_11_7125001	chrX_7125001	Samar-Dw1
1621	chrX	8031428	8031456	chrX	8035737	8035765	Juan	5	4309	3.5	5.5	4.5	0.9	4337	chrX	8031428	intergenic	not near genes	chrX	8033596	intergenic	not near genes	chrX	8035765	3` UTR	CG2233 -	chrX_5_8030001	chrX_8030001	Samar-Dw1
1622	chrX	8364842	8364877	chrX	8365239	8365274	BS	5	397	2.5	1.5	2.0	1.7	432	chrX	8364842	intron	nAChRalpha3 -	chrX	8365058	intron	nAChRalpha3 -	chrX	8365274	intron	nAChRalpha3 -	chrX_5_8365001	chrX_8365001	Samar-Dw1
1627	chrX	8922326	8922363	chrX	8922760	8922797	jockey	18	434	2.0	2.0	2.0	6.0	471	chrX	8922326	intron	rdgA +	chrX	8922562	intron	rdgA +	chrX	8922797	intron	rdgA +	chrX_18_8920001	chrX_8920001	Samar-Dw1
1632	chrX	9508135	9508167	chrX	9509653	9509685	jockey	7	1518	3.0	2.0	2.5	2.0	1550	chrX	9508135	intron	CG32700 -	chrX	9508910	intron	CG32700 -	chrX	9509685	intron	CG32700 -	chrX_7_9505001	chrX_9505001	Samar-Dw1
1633	chrX	9575789	9575821	chrX	9576113	9576143	mdg3	11	324	4.0	2.5	3.2	2.6	354	chrX	9575789	intron,exon	CG32699 -,CG42395 -	chrX	9575966	intron,intron	CG32699 -,CG42395 -	chrX	9576143	intron,5` UTR	CG32699 -,CG42395 -	chrX_11_9575001	chrX_9575001	Samar-Dw1
1636	chrX	10138222	10138245	chrX	10145726	10145749	412	6	7504	3.0	3.0	3.0	1.5	7527	chrX	10138222	intron,intron	RhoU +,CR44894 -	chrX	10141986	intron,intron	RhoU +,CR44894 -	chrX	10145749	intron,intron	RhoU +,CR44894 -	chrX_6_10140001	chrX_10140001	Samar-Dw1
1642	chrX	10686050	10686084	chrX	10691187	10691221	roo	10	5137	2.0	2.0	2.0	3.3	5171	chrX	10686050	intron	X11Lbeta +	chrX	10688636	intron	X11Lbeta +	chrX	10691221	intron	X11Lbeta +	chrX_10_10685001	chrX_10685001	Samar-Dw1
1643	chrX	10772676	10772698	chrX	10772759	10772781	Tirant	7	83	1.5	2.0	1.8	2.5	105	chrX	10772676	intron	CG15211 +	chrX	10772728	intron	CG15211 +	chrX	10772781	intron	CG15211 +	chrX_7_10770001	chrX_10770001	Samar-Dw1
1648	chrX	11194453	11194457	chrX	11201874	11201878	gypsy5	4	7421	2.5	9.0	5.8	0.6	7425	chrX	11194453	intergenic	not near genes	chrX	11198166	intergenic	not near genes	chrX	11201878	intergenic	CG11106 +	chrX_4_11195001	chrX_11195001	Samar-Dw1
1649	chrX	11312057	11312081	chrX	11319410	11319434	Stalker2	7	7353	1.5	2.0	1.8	2.5	7377	chrX	11312057	intergenic	not near genes	chrX	11315746	intergenic	not near genes	chrX	11319434	intergenic	not near genes	chrX_7_11315001	chrX_11315001	Samar-Dw1
1652	chrX	11633416	11633447	chrX	11640470	11640501	297	9	7054	3.0	2.5	2.8	2.4	7085	chrX	11633416	intron	Ptp10D +	chrX	11636958	intron	Ptp10D +	chrX	11640501	intron	Ptp10D +	chrX_9_11635001	chrX_11635001	Samar-Dw1
1656	chrX	12168147	12168165	chrX	12173589	12173607	I-element	6	5442	1.5	4.0	2.8	1.6	5460	chrX	12168147	intron	Ten-a +	chrX	12170877	intron	Ten-a +	chrX	12173607	intron	Ten-a +	chrX_6_12170001	chrX_12170001	Samar-Dw1
1666	chrX	13429464	13429494	chrX	13430613	13430643	jockey	10	1149	1.5	5.0	3.2	2.4	1179	chrX	13429464	intergenic	not near genes	chrX	13430054	intergenic	not near genes	chrX	13430643	intergenic	not near genes	chrX_10_13430001	chrX_13430001	Samar-Dw1
1671	chrX	14105024	14105055	chrX	14114175	14114206	roo	12	9151	1.5	1.5	1.5	4.8	9182	chrX	14105024	intergenic	not near genes	chrX	14109615	intergenic	not near genes	chrX	14114206	5` UTR	CR44657 +	chrX_12_14105001	chrX_14105001	Samar-Dw1
1679	chrX	14636467	14636493	chrX	14641908	14641934	I-element	7	5441	1.5	2.5	2.0	2.3	5467	chrX	14636467	intron	NetA -	chrX	14639200	intron	NetA -	chrX	14641934	intron	NetA -	chrX_7_14635001	chrX_14635001	Samar-Dw1
1680	chrX	14778026	14778056	chrX	14782823	14782853	Doc	11	4797	1.5	3.5	2.5	3.1	4827	chrX	14778026	intergenic	CG5347 +	chrX	14780440	intergenic	not near genes	chrX	14782853	intergenic	Ag5r2 -	chrX_11_14780001	chrX_14780001	Samar-Dw1
1681	chrX	14818762	14818797	chrX	14823966	14824001	copia	4	5204	1.0	0.0	0.5	2.7	5239	chrX	14818762	intron	rut -	chrX	14821382	intron	rut -	chrX	14824001	intron	rut -	chrX_4_14820001	chrX_14820001	Samar-Dw1
1683	chrX	14936860	14936887	chrX	14946117	14946144	roo	5	9257	2.0	3.0	2.5	1.4	9284	chrX	14936860	intron	pdgy -	chrX	14941502	intron	pdgy -	chrX	14946144	intron	pdgy -	chrX_5_14940001	chrX_14940001	Samar-Dw1
1687	chrX	15273702	15273738	chrX	15274869	15274905	1360	15	1167	3.5	6.0	4.8	2.6	1203	chrX	15273702	intergenic	not near genes	chrX	15274304	intergenic	not near genes	chrX	15274905	intergenic	not near genes	chrX_15_15270001	chrX_15270001	Samar-Dw1
1688	chrX	15413048	15413079	chrX	15417350	15417381	Juan	9	4302	5.5	3.0	4.2	1.7	4333	chrX	15413048	intron	Cngl -	chrX	15415214	intron	Cngl -	chrX	15417381	intron	Cngl -	chrX_9_15415001	chrX_15415001	Samar-Dw1
1696	chrX	16492644	16492676	chrX	16498221	16498253	mdg3	7	5577	3.5	4.0	3.8	1.5	5609	chrX	16492644	intron	para -	chrX	16495448	intron	para -	chrX	16498253	intron	para -	chrX_7_16495001	chrX_16495001	Samar-Dw1
1699	chrX	16936001	16936031	chrX	16936419	16936449	jockey	5	418	0.5	0.0	0.2	4.2	448	chrX	16936001	intron	CG4928 +	chrX	16936225	intron	CG4928 +	chrX	16936449	intron	CG4928 +	chrX_5_16935001	chrX_16935001	Samar-Dw1
1701	chrX	17195206	17195223	chrX	17200292	17200309	flea	7	5086	2.0	1.5	1.8	2.5	5103	chrX	17195206	3` UTR	baz +	chrX	17197758	3` UTR	baz +	chrX	17200309	3` UTR	baz +	chrX_7_17195001	chrX_17195001	Samar-Dw1
1705	chrX	17556942	17556952	chrX	17557441	17557451	mdg1	4	499	3.0	1.0	2.0	1.3	509	chrX	17556942	intron	CG43658 -	chrX	17557196	intron	CG43658 -	chrX	17557451	intron	CG43658 -	chrX_4_17555001	chrX_17555001	Samar-Dw1
1709	chrX	18194064	18194103	chrX	18194599	18194638	BS	21	535	4.5	2.0	3.2	5.0	574	chrX	18194064	intron	Frq2 +	chrX	18194351	intron	Frq2 +	chrX	18194638	intron	Frq2 +	chrX_21_18190001	chrX_18190001	Samar-Dw1
1712	chrX	18429493	18429519	chrX	18434804	18434830	Transpac	5	5311	3.0	2.5	2.8	1.3	5337	chrX	18429493	intergenic	not near genes	chrX	18432162	intergenic	not near genes	chrX	18434830	intergenic	not near genes	chrX_5_18430001	chrX_18430001	Samar-Dw1
1719	chrX	19060411	19060432	chrX	19065195	19065216	Doc	5	4784	1.5	1.0	1.2	2.3	4805	chrX	19060411	intron	CG14190 +	chrX	19062814	intron	CG14190 +	chrX	19065216	intron	CG14190 +	chrX_5_19060001	chrX_19060001	Samar-Dw1
1727	chrX	19472124	19472158	chrX	19472694	19472728	jockey	9	570	1.5	3.0	2.2	2.8	604	chrX	19472124	intergenic	kek5 +	chrX	19472426	intergenic	not near genes	chrX	19472728	intergenic	not near genes	chrX_9_19470001	chrX_19470001	Samar-Dw1
1728	chrX	19710071	19710087	chrX	19711857	19711873	S-element	7	1786	4.5	3.0	3.8	1.5	1802	chrX	19710071	intron	meso18E -	chrX	19710972	intron	meso18E -	chrX	19711873	intron	meso18E -	chrX_7_19710001	chrX_19710001	Samar-Dw1
1746	chrX	20377328	20377344	chrX	20378795	20378811	hobo	8	1467	8.0	7.0	7.5	0.9	1483	chrX	20377328	intergenic	not near genes	chrX	20378070	intergenic	not near genes	chrX	20378811	intergenic	not near genes	chrX_8_20375001	chrX_20375001	Samar-Dw1
1754	chrX	20836729	20836752	chrX	20844331	20844354	roo	4	7602	1.0	0.5	0.8	2.2	7625	chrX	20836729	intron	shakB -	chrX	20840542	intron	shakB -	chrX	20844354	intron	shakB -	chrX_4_20840001	chrX_20840001	Samar-Dw1
1755	chrX	20940720	20940750	chrX	20942189	20942219	hobo	5	1469	4.5	5.0	4.8	0.9	1499	chrX	20940720	intergenic	not near genes	chrX	20941470	intergenic	not near genes	chrX	20942219	intergenic	not near genes	chrX_5_20940001	chrX_20940001	Samar-Dw1
1759	chrX	21086128	21086155	chrX	21087157	21087184	jockey	5	1029	3.5	1.5	2.5	1.4	1056	chrX	21086128	intergenic	not near genes	chrX	21086656	intergenic	not near genes	chrX	21087184	intergenic	not near genes	chrX_5_21085001	chrX_21085001	Samar-Dw1
1763	chrX	21458695	21458729	chrX	21464131	21464165	Ivk	7	5436	0.0	1.5	0.8	3.9	5470	chrX	21458695	intergenic	not near genes	chrX	21461430	intergenic	not near genes	chrX	21464165	intergenic	not near genes	chrX_7_21460001	chrX_21460001	Samar-Dw1
1764	chrX	21474402	21474427	chrX	21474768	21474793	1731	5	366	3.5	0.5	2.0	1.7	391	chrX	21474402	intergenic	not near genes	chrX	21474598	intergenic	not near genes	chrX	21474793	intergenic	not near genes	chrX_5_21470001	chrX_21470001	Samar-Dw1
1770	chrX	22522638	22522659	chrX	22525458	22525479	NOF	4	2820	3.5	0.0	1.8	1.4	2841	chrX	22522638	intron	CG17600 +	chrX	22524058	intron	CG17600 +	chrX	22525479	intron	CG17600 +	chrX_4_22520001	chrX_22520001	Samar-Dw1
1771	chrX	22564559	22564578	chrX	22575131	22575150	jockey	4	10572	3.0	4.5	3.8	0.8	10591	chrX	22564559	intergenic	not near genes	chrX	22569854	intergenic	not near genes	chrX	22575150	intergenic	not near genes	chrX_4_22565001	chrX_22565001	Samar-Dw1
1774	chrX	22697499	22697523	chrX	22701796	22701820	Juan	8	4297	3.0	2.5	2.8	2.1	4321	chrX	22697499	intron	CR44997 +	chrX	22699660	intron	CR44997 +	chrX	22701820	intron	CR44997 +	chrX_8_22695001	chrX_22695001	Samar-Dw1
1780	chrX	22996311	22996339	chrX	23003545	23003573	roo	10	7234	3.0	3.0	3.0	2.5	7262	chrX	22996311	intron,intron	stnA -,stnB -	chrX	22999942	intron,intron	stnA -,stnB -	chrX	23003573	intron,intron	stnA -,stnB -	chrX_10_22995001	chrX_22995001	Samar-Dw1