SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 2100375 2100407 chr2L 2109527 2109551 roo 26 9157 10.5 12.0 11.2 2.1 9176 chr2L 2100375 intron dpr3 - chr2L 2104963 intron dpr3 - chr2L 2109551 intron dpr3 - chr2L_26_2100001 chr2L_2100001 ISO1-CL-HEm12 2 chr2L 2661193 2661232 chr2L 2663032 2663071 I-element 19 1840 6.0 7.5 6.8 2.4 1878 chr2L 2661193 intergenic not near genes chr2L 2662132 intergenic not near genes chr2L 2663071 intergenic not near genes chr2L_19_2660001 chr2L_2660001 ISO1-CL-HEm12 3 chr2L 6530860 6530894 chr2L 6531007 6531041 17 151 2.0 5.0 3.5 3.8 181 chr2L 6530860 intron eya - chr2L 6530950 intron eya - chr2L 6531041 intron eya - chr2L_17_6530001 chr2L_6530001 ISO1-CL-HEm12 4 chr2L 6876774 6876808 chr2L 6882965 6883015 diver 10 6201 7.0 4.0 5.5 1.5 6241 chr2L 6876774 intron Nlg2 + chr2L 6879894 intron Nlg2 + chr2L 6883015 intron Nlg2 + chr2L_10_6875001 chr2L_6875001 ISO1-CL-HEm12 5 chr2L 7977077 7977112 chr2L 7984052 7984087 297 16 6974 6.0 7.0 6.5 2.1 7010 chr2L 7977077 intron Snoo - chr2L 7980582 intron Snoo - chr2L 7984087 intron,5` UTR Snoo -,CG7231 + chr2L_16_7980001 chr2L_7980001 ISO1-CL-HEm12 6 chr2L 8088011 8088044 chr2L 8118659 8118716 53 30665 87.0 72.0 79.5 0.7 30705 chr2L 8088011 intron Bsg + chr2L 8103364 intron Bsg + chr2L 8118716 exon mon2 - chr2L_53_8100001 chr2L_8100001 ISO1-CL-HEm12 7 chr2L 8723112 8723145 chr2L 8731490 8731523 Tirant 20 8383 5.0 1.5 3.2 4.8 8411 chr2L 8723112 intron raw - chr2L 8727318 intron raw - chr2L 8731523 intron raw - chr2L_20_8725001 chr2L_8725001 ISO1-CL-HEm12 8 chr2L 10679877 10679896 chr2L 10679959 10679976 8 82 6.5 7.5 7.0 1.0 99 chr2L 10679877 intergenic CG17104 +,CR44180 - chr2L 10679926 intergenic CG17104 +,CR44180 - chr2L 10679976 intergenic CR44180 -,CG17104 + chr2L_8_10675001 chr2L_10675001 ISO1-CL-HEm12 9 chr2L 12861693 12861730 chr2L 12863160 12863198 hobo 14 1471 4.0 5.5 4.8 2.4 1505 chr2L 12861693 intergenic not near genes chr2L 12862446 intergenic not near genes chr2L 12863198 intergenic not near genes chr2L_14_12860001 chr2L_12860001 ISO1-CL-HEm12 10 chr2L 12894021 12894054 chr2L 12895489 12895522 hobo 30 1473 9.0 8.0 8.5 3.2 1501 chr2L 12894021 intergenic not near genes chr2L 12894772 intergenic not near genes chr2L 12895522 intergenic not near genes chr2L_30_12890001 chr2L_12890001 ISO1-CL-HEm12 11 chr2L 15956004 15956016 chr2L 15957496 15957507 hobo 4 1492 21.0 15.5 18.2 0.2 1503 chr2L 15956004 intron beat-Ib - chr2L 15956756 intron beat-Ib - chr2L 15957507 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 ISO1-CL-HEm12 12 chr2L 15956020 15956060 chr2L 15957488 15957528 hobo 24 1476 9.0 12.0 10.5 2.1 1508 chr2L 15956020 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957528 intron beat-Ib - chr2L_24_15955001 chr2L_15955001 ISO1-CL-HEm12 13 chr2L 17199161 17199192 chr2L 17200629 17200660 hobo 16 1468 10.0 9.5 9.8 1.5 1499 chr2L 17199161 intron beat-IIIc - chr2L 17199910 intron beat-IIIc - chr2L 17200660 intron beat-IIIc - chr2L_16_17195001 chr2L_17195001 ISO1-CL-HEm12 14 chr2L 17687495 17687512 chr2L 17692265 17692282 F-element 6 4770 12.0 12.5 12.2 0.5 4787 chr2L 17687495 intron CadN - chr2L 17689888 intron CadN - chr2L 17692282 intron CadN - chr2L_6_17685001 chr2L_17685001 ISO1-CL-HEm12 15 chr2L 17687517 17687523 chr2L 17692263 17692269 F-element 8 4752 9.5 12.0 10.8 0.7 4752 chr2L 17687517 intron CadN - chr2L 17689893 intron CadN - chr2L 17692269 intron CadN - chr2L_8_17685001 chr2L_17685001 ISO1-CL-HEm12 16 chr2L 17727845 17727875 chr2L 17729337 17729343 hobo 14 1478 13.5 17.0 15.2 0.9 1498 chr2L 17727845 intron CadN - chr2L 17728594 intron CadN - chr2L 17729343 intron CadN - chr2L_14_17725001 chr2L_17725001 ISO1-CL-HEm12 17 chr2L 17727877 17727881 chr2L 17729335 17729349 hobo 5 1466 9.5 16.5 13.0 0.4 1472 chr2L 17727877 intron CadN - chr2L 17728613 intron CadN - chr2L 17729349 intron CadN - chr2L_5_17725001 chr2L_17725001 ISO1-CL-HEm12 18 chr2L 17951931 17951940 chr2L 17953423 17953432 hobo 4 1492 19.0 9.0 14.0 0.3 1501 chr2L 17951931 intergenic CR44398 -,CR44397 - chr2L 17952682 intergenic not near genes chr2L 17953432 intergenic not near genes chr2L_4_17950001 chr2L_17950001 ISO1-CL-HEm12 19 chr2L 17951943 17951980 chr2L 17953411 17953434 hobo 22 1473 10.0 6.5 8.2 2.4 1491 chr2L 17951943 intergenic CR44398 -,CR44397 - chr2L 17952688 intergenic not near genes chr2L 17953434 intergenic not near genes chr2L_22_17950001 chr2L_17950001 ISO1-CL-HEm12 20 chr2L 17988361 17988379 chr2L 17991934 17991952 4 3573 40.5 60.0 50.2 0.1 3591 chr2L 17988361 3` UTR CG5681 + chr2L 17990156 intergenic Prosbeta5R2 + chr2L 17991952 intergenic Prosbeta5R2 + chr2L_4_17990001 chr2L_17990001 ISO1-CL-HEm12 21 chr2L 17988360 17988395 chr2L 17991957 17991992 25 3595 43.0 51.0 47.0 0.5 3632 chr2L 17988360 3` UTR CG5681 + chr2L 17990176 intergenic Prosbeta5R2 + chr2L 17991992 intergenic Prosbeta5R2 + chr2L_25_17990001 chr2L_17990001 ISO1-CL-HEm12 22 chr2L 20101952 20101987 chr2L 20102031 20102066 15 85 6.0 2.5 4.2 2.9 114 chr2L 20101952 exon Kua + chr2L 20102009 exon Kua + chr2L 20102066 exon Kua + chr2L_15_20100001 chr2L_20100001 ISO1-CL-HEm12 23 chr2R 469922 469939 chr2R 4141909 4141909 5 3671984 65.0 41.5 53.2 0.1 3671987 chr2R 469922 intergenic not near genes chr2R 2305916 intergenic not near genes chr2R 4141909 intergenic not near genes chr2R_5_2305001 chr2R_2305001 ISO1-CL-HEm12 24 chr2R 1340063 1340082 chr2R 1340154 1340197 10 98 29.5 34.0 31.8 0.3 134 chr2R 1340063 intergenic not near genes chr2R 1340130 intergenic not near genes chr2R 1340197 intergenic not near genes chr2R_10_1340001 chr2R_1340001 ISO1-CL-HEm12 25 chr2R 3144092 3144105 chr2R 3393371 3393408 Doc 5 249284 43.5 28.0 35.8 0.1 249316 chr2R 3144092 intron CG42596 + chr2R 3268750 intergenic not near genes chr2R 3393408 intergenic not near genes chr2R_5_3265001 chr2R_3265001 ISO1-CL-HEm12 26 chr2R 3293744 3293767 chr2R 3293823 3293845 10 79 6.0 5.5 5.8 1.5 101 chr2R 3293744 intergenic not near genes chr2R 3293794 intergenic not near genes chr2R 3293845 intergenic not near genes chr2R_10_3290001 chr2R_3290001 ISO1-CL-HEm12 27 chr2R 7209844 7209872 chr2R 7217593 7217638 roo 19 7752 9.0 10.0 9.5 1.8 7794 chr2R 7209844 intron pk + chr2R 7213741 intron pk + chr2R 7217638 intron pk + chr2R_19_7210001 chr2R_7210001 ISO1-CL-HEm12 28 chr2R 7608408 7608434 chr2R 7613612 7613638 I-element 16 5206 6.5 5.0 5.8 2.4 5230 chr2R 7608408 intron CG1358 - chr2R 7611023 intron CG1358 - chr2R 7613638 intron CG1358 - chr2R_16_7610001 chr2R_7610001 ISO1-CL-HEm12 29 chr2R 7869167 7869176 chr2R 7873978 7873987 Doc 5 4811 30.0 11.5 20.8 0.2 4820 chr2R 7869167 intron Dgk - chr2R 7871577 intron Dgk - chr2R 7873987 intron Dgk - chr2R_5_7870001 chr2R_7870001 ISO1-CL-HEm12 30 chr2R 7869187 7869216 chr2R 7873974 7874003 Doc 21 4789 12.5 9.0 10.8 1.8 4816 chr2R 7869187 intron Dgk - chr2R 7871595 intron Dgk - chr2R 7874003 intron Dgk - chr2R_21_7870001 chr2R_7870001 ISO1-CL-HEm12 31 chr2R 8398187 8398205 chr2R 8402993 8403011 Doc 5 4806 12.0 4.0 8.0 0.6 4824 chr2R 8398187 intron CG2121 - chr2R 8400599 intron CG2121 - chr2R 8403011 intron CG2121 - chr2R_5_8400001 chr2R_8400001 ISO1-CL-HEm12 32 chr2R 8398208 8398220 chr2R 8402990 8403026 Doc 9 4789 9.0 3.0 6.0 1.3 4818 chr2R 8398208 intron CG2121 - chr2R 8400617 intron CG2121 - chr2R 8403026 intron CG2121 - chr2R_9_8400001 chr2R_8400001 ISO1-CL-HEm12 33 chr2R 8398221 8398241 chr2R 8402986 8403023 Doc 13 4784 6.5 3.0 4.8 2.2 4802 chr2R 8398221 intron CG2121 - chr2R 8400622 intron CG2121 - chr2R 8403023 intron CG2121 - chr2R_13_8400001 chr2R_8400001 ISO1-CL-HEm12 34 chr2R 10585573 10585591 chr2R 10594156 10594175 Tirant 19 8587 10.0 12.5 11.2 1.6 8602 chr2R 10585573 intron psq + chr2R 10589874 intron psq + chr2R 10594175 intron psq + chr2R_19_10585001 chr2R_10585001 ISO1-CL-HEm12 35 chr2R 13136840 13136865 chr2R 13141639 13141664 Doc 9 4802 3.5 3.5 3.5 2.0 4824 chr2R 13136840 exon Cap-G + chr2R 13139252 intron Cap-G + chr2R 13141664 intron Cap-G + chr2R_9_13135001 chr2R_13135001 ISO1-CL-HEm12 36 chr2R 14394229 14394246 chr2R 14399019 14399036 Doc 4 4790 5.0 2.0 3.5 0.9 4807 chr2R 14394229 intergenic not near genes chr2R 14396632 intergenic not near genes chr2R 14399036 intergenic not near genes chr2R_4_14395001 chr2R_14395001 ISO1-CL-HEm12 37 chr2R 15119315 15119349 chr2R 15127797 15127831 Tirant 31 8489 16.0 14.0 15.0 1.9 8516 chr2R 15119315 intron chn + chr2R 15123573 intron chn + chr2R 15127831 intron chn + chr2R_31_15120001 chr2R_15120001 ISO1-CL-HEm12 38 chr2R 24918354 24918379 chr2R 24920382 24920407 5 2031 3.5 3.0 3.2 1.2 2053 chr2R 24918354 3` UTR NaCP60E + chr2R 24919380 3` UTR NaCP60E + chr2R 24920407 3` UTR NaCP60E + chr2R_5_24915001 chr2R_24915001 ISO1-CL-HEm12 39 chr3L 1154131 1154163 chr3L 1163282 1163314 roo 16 9152 5.0 8.0 6.5 2.1 9183 chr3L 1154131 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163314 intron bab2 - chr3L_16_1155001 chr3L_1155001 ISO1-CL-HEm12 40 chr3L 2344040 2344071 chr3L 2344772 2344827 13 745 36.5 37.0 36.8 0.3 787 chr3L 2344040 exon MsR1 + chr3L 2344434 3` UTR MsR1 + chr3L 2344827 3` UTR MsR1 + chr3L_13_2340001 chr3L_2340001 ISO1-CL-HEm12 41 chr3L 2927818 2927833 chr3L 2936120 2936134 Tirant 5 8302 29.0 20.0 24.5 0.2 8316 chr3L 2927818 intron Shab + chr3L 2931976 intron Shab + chr3L 2936134 intron Shab + chr3L_5_2930001 chr3L_2930001 ISO1-CL-HEm12 42 chr3L 2927836 2927871 chr3L 2936114 2936173 Tirant 38 8283 12.5 17.0 14.8 2.4 8337 chr3L 2927836 intron Shab + chr3L 2932004 intron Shab + chr3L 2936173 intron Shab + chr3L_38_2930001 chr3L_2930001 ISO1-CL-HEm12 43 chr3L 3281430 3281439 chr3L 3281951 3281960 Doc 4 521 18.0 16.5 17.2 0.2 530 chr3L 3281430 intron CG12017 + chr3L 3281695 intron CG12017 + chr3L 3281960 intron CG12017 + chr3L_4_3280001 chr3L_3280001 ISO1-CL-HEm12 44 chr3L 3281454 3281470 chr3L 3281934 3281967 Doc 15 495 7.0 11.5 9.2 1.5 513 chr3L 3281454 intron CG12017 + chr3L 3281710 intron CG12017 + chr3L 3281967 intron CG12017 + chr3L_15_3280001 chr3L_3280001 ISO1-CL-HEm12 45 chr3L 5104481 5104512 chr3L 5124616 5124647 24 20138 5.5 11.5 8.5 2.5 20166 chr3L 5104481 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124647 intergenic not near genes chr3L_24_5110001 chr3L_5110001 ISO1-CL-HEm12 46 chr3L 6855919 6855952 chr3L 6860703 6860736 Doc 12 4792 10.0 9.5 9.8 1.1 4817 chr3L 6855919 intergenic not near genes chr3L 6858328 intergenic not near genes chr3L 6860736 intergenic not near genes chr3L_12_6855001 chr3L_6855001 ISO1-CL-HEm12 47 chr3L 8481765 8481771 chr3L 8490938 8490955 roo 6 9182 11.0 0.5 5.8 0.9 9190 chr3L 8481765 intron CG43163 - chr3L 8486360 intron CG43163 - chr3L 8490955 intron CG43163 - chr3L_6_8485001 chr3L_8485001 ISO1-CL-HEm12 48 chr3L 8481776 8481791 chr3L 8490936 8490952 roo 4 9160 7.0 0.5 3.8 0.8 9176 chr3L 8481776 intron CG43163 - chr3L 8486364 intron CG43163 - chr3L 8490952 intron CG43163 - chr3L_4_8485001 chr3L_8485001 ISO1-CL-HEm12 49 chr3L 8481793 8481806 chr3L 8490934 8490966 roo 4 9152 4.5 0.5 2.5 1.1 9173 chr3L 8481793 intron CG43163 - chr3L 8486380 intron CG43163 - chr3L 8490966 intron CG43163 - chr3L_4_8485001 chr3L_8485001 ISO1-CL-HEm12 50 chr3L 8791277 8791298 chr3L 8796698 8796719 I-element 9 5426 9.5 5.5 7.5 1.1 5442 chr3L 8791277 exon Fhos + chr3L 8793998 intron Fhos + chr3L 8796719 intron Fhos + chr3L_9_8790001 chr3L_8790001 ISO1-CL-HEm12 51 chr3L 9164679 9164692 chr3L 9166171 9166184 hobo 4 1492 31.5 10.0 20.8 0.2 1505 chr3L 9164679 intron Rdl - chr3L 9165432 intron Rdl - chr3L 9166184 intron Rdl - chr3L_4_9165001 chr3L_9165001 ISO1-CL-HEm12 52 chr3L 9164695 9164732 chr3L 9166163 9166190 hobo 47 1468 14.5 10.0 12.2 3.6 1495 chr3L 9164695 intron Rdl - chr3L 9165442 intron Rdl - chr3L 9166190 intron Rdl - chr3L_47_9165001 chr3L_9165001 ISO1-CL-HEm12 53 chr3L 9526473 9526482 chr3L 9528177 9528187 Doc 4 1705 18.5 11.5 15.0 0.2 1714 chr3L 9526473 intergenic not near genes chr3L 9527330 intergenic not near genes chr3L 9528187 intergenic not near genes chr3L_4_9525001 chr3L_9525001 ISO1-CL-HEm12 54 chr3L 9526483 9526515 chr3L 9528164 9528196 Doc 21 1686 9.0 7.0 8.0 2.3 1713 chr3L 9526483 intergenic not near genes chr3L 9527340 intergenic not near genes chr3L 9528196 intergenic not near genes chr3L_21_9525001 chr3L_9525001 ISO1-CL-HEm12 55 chr3L 10278438 10278454 chr3L 13043031 13043033 5 2764590 25.5 28.0 26.8 0.2 2764595 chr3L 10278438 intergenic not near genes chr3L 11660736 intron CG32085 - chr3L 13043033 intron,5` UTR RpS4 +,snoRNA:Psi28S-3327b + chr3L_5_11660001 chr3L_11660001 ISO1-CL-HEm12 56 chr3L 21014895 21014900 chr3L 21023401 21023406 Tirant 4 8506 44.0 27.0 35.5 0.1 8511 chr3L 21014895 intron skd - chr3L 21019150 intron skd - chr3L 21023406 intron skd - chr3L_4_21015001 chr3L_21015001 ISO1-CL-HEm12 57 chr3L 21014901 21014911 chr3L 21023396 21023417 Tirant 8 8504 30.5 23.0 26.8 0.3 8516 chr3L 21014901 intron skd - chr3L 21019159 intron skd - chr3L 21023417 intron skd - chr3L_8_21015001 chr3L_21015001 ISO1-CL-HEm12 58 chr3L 21014912 21014947 chr3L 21023394 21023429 Tirant 48 8490 10.5 21.0 15.8 2.9 8517 chr3L 21014912 intron skd - chr3L 21019170 intron skd - chr3L 21023429 intron skd - chr3L_48_21015001 chr3L_21015001 ISO1-CL-HEm12 59 chr3L 21306145 21306176 chr3L 21315305 21315336 roo 16 9169 5.0 5.0 5.0 2.7 9191 chr3L 21306145 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310740 intron Pc - chr3L 21315336 3` UTR Pc - chr3L_16_21310001 chr3L_21310001 ISO1-CL-HEm12 60 chr3L 22577618 22577646 chr3L 22582407 22582435 Doc 19 4795 4.5 4.0 4.2 3.7 4817 chr3L 22577618 intergenic not near genes chr3L 22580026 intergenic not near genes chr3L 22582435 3` UTR CG14459 - chr3L_19_22580001 chr3L_22580001 ISO1-CL-HEm12 61 chr3L 22865979 22866012 chr3L 22867113 22867146 Doc 15 1140 3.5 2.5 3.0 3.8 1167 chr3L 22865979 intron CG33170 + chr3L 22866562 intron CG33170 + chr3L 22867146 intron CG33170 + chr3L_15_22865001 chr3L_22865001 ISO1-CL-HEm12 62 chr3L 23311682 23311683 chr3L 26026911 26026912 G6 4 2715229 17.5 13.5 15.5 0.2 2715230 chr3L 23311682 intergenic not near genes chr3L 24669297 intergenic not near genes chr3L 26026912 intergenic not near genes chr3L_4_24665001 chr3L_24665001 ISO1-CL-HEm12 63 chr3L 24791870 24791914 chr3L 24796674 24796686 Doc 23 4792 14.0 5.5 9.8 2.1 4816 chr3L 24791870 intergenic not near genes chr3L 24794278 intergenic not near genes chr3L 24796686 intergenic not near genes chr3L_23_24790001 chr3L_24790001 ISO1-CL-HEm12 64 chr3L 23311674 23311682 chr3L 26026795 26026803 G6 7 2715121 17.5 14.0 15.8 0.4 2715129 chr3L 23311674 intergenic not near genes chr3L 24669238 intergenic not near genes chr3L 26026803 intergenic not near genes chr3L_7_24665001 chr3L_24665001 ISO1-CL-HEm12 65 chr3L 27390432 27390711 chr3L 27390678 27390791 18 120 69.0 74.0 71.5 0.2 359 chr3L 27390432 intron Dbp80 + chr3L 27390612 intron Dbp80 + chr3L 27390791 intron Dbp80 + chr3L_18_27390001 chr3L_27390001 ISO1-CL-HEm12 66 chr3R 1446691 1446704 chr3R 2999473 2999473 invader2 7 1552780 21.0 5.0 13.0 0.5 1552782 chr3R 1446691 intron CG40155 + chr3R 2223082 intergenic not near genes chr3R 2999473 intron CG42618 - chr3R_7_2220001 chr3R_2220001 ISO1-CL-HEm12 67 chr3R 1511855 1511860 chr3R 2516773 2516778 297 9 1004918 32.0 59.5 45.8 0.2 1004923 chr3R 1511855 intergenic not near genes chr3R 2014316 intergenic not near genes chr3R 2516778 intergenic not near genes chr3R_9_2010001 chr3R_2010001 ISO1-CL-HEm12 68 chr3R 2534111 2534122 chr3R 2541705 2541715 6 7594 186.0 65.0 125.5 0.0 7604 chr3R 2534111 intergenic not near genes chr3R 2537913 intergenic not near genes chr3R 2541715 intergenic not near genes chr3R_6_2535001 chr3R_2535001 ISO1-CL-HEm12 69 chr3R 2534133 2534165 chr3R 2541703 2541734 50 7576 153.5 65.0 109.2 0.5 7601 chr3R 2534133 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541734 intergenic not near genes chr3R_50_2535001 chr3R_2535001 ISO1-CL-HEm12 70 chr3R 556529 556531 chr3R 3736166 3736168 blood 5 3179637 10.0 33.5 21.8 0.2 3179639 chr3R 556529 intergenic not near genes chr3R 2146348 intergenic not near genes chr3R 3736168 intron Tim17b + chr3R_5_2145001 chr3R_2145001 ISO1-CL-HEm12 71 chr3R 5045818 5045878 chr3R 5052945 5052981 HMS-Beagle 21 7114 5.5 4.5 5.0 3.5 7163 chr3R 5045818 3` UTR CR43635 - chr3R 5049400 intergenic not near genes chr3R 5052981 intergenic CR45588 - chr3R_21_5045001 chr3R_5045001 ISO1-CL-HEm12 72 chr3R 6158488 6158505 chr3R 6167096 6167113 Tirant 4 8608 22.5 7.0 14.8 0.3 8625 chr3R 6158488 intergenic not near genes chr3R 6162800 intergenic not near genes chr3R 6167113 intergenic CG1077 + chr3R_4_6160001 chr3R_6160001 ISO1-CL-HEm12 73 chr3R 6158509 6158540 chr3R 6167092 6167128 Tirant 24 8589 7.5 6.0 6.8 3.1 8619 chr3R 6158509 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167128 intergenic CG1077 + chr3R_24_6160001 chr3R_6160001 ISO1-CL-HEm12 74 chr3R 13914983 13915019 chr3R 13915219 13915231 10 226 5.0 4.5 4.8 1.7 248 chr3R 13914983 intergenic not near genes chr3R 13915107 intergenic not near genes chr3R 13915231 intergenic not near genes chr3R_10_13915001 chr3R_13915001 ISO1-CL-HEm12 75 chr3R 16756299 16756304 chr3R 16762514 16762520 diver 4 6216 20.0 4.0 12.0 0.3 6221 chr3R 16756299 intron bxd - chr3R 16759410 intron bxd - chr3R 16762520 intron bxd - chr3R_4_16755001 chr3R_16755001 ISO1-CL-HEm12 76 chr3R 16756316 16756353 chr3R 16762508 16762545 diver 16 6200 8.5 3.5 6.0 2.3 6229 chr3R 16756316 intron bxd - chr3R 16759430 intron bxd - chr3R 16762545 intron bxd - chr3R_16_16755001 chr3R_16755001 ISO1-CL-HEm12 77 chr3R 16794302 16794331 chr3R 16794642 16794695 9 357 20.5 21.5 21.0 0.4 393 chr3R 16794302 intergenic not near genes chr3R 16794498 intergenic not near genes chr3R 16794695 intergenic not near genes chr3R_9_16790001 chr3R_16790001 ISO1-CL-HEm12 78 chr3R 17705625 17705645 chr3R 17705766 17705786 4 141 19.5 9.0 14.2 0.3 161 chr3R 17705625 intron osa - chr3R 17705706 intron osa - chr3R 17705786 intron osa - chr3R_4_17705001 chr3R_17705001 ISO1-CL-HEm12 79 chr3R 17705646 17705678 chr3R 17705763 17705795 18 122 8.5 7.5 8.0 2.0 149 chr3R 17705646 intron osa - chr3R 17705720 intron osa - chr3R 17705795 intron osa - chr3R_18_17705001 chr3R_17705001 ISO1-CL-HEm12 80 chr3R 21141652 21141668 chr3R 21150158 21150174 Tirant 6 8506 18.5 8.0 13.2 0.4 8522 chr3R 21141652 intron SNF4Agamma + chr3R 21145913 intron SNF4Agamma + chr3R 21150174 intron SNF4Agamma + chr3R_6_21145001 chr3R_21145001 ISO1-CL-HEm12 81 chr3R 21141671 21141707 chr3R 21150153 21150189 Tirant 18 8483 2.5 6.5 4.5 3.3 8518 chr3R 21141671 intron SNF4Agamma + chr3R 21145930 intron SNF4Agamma + chr3R 21150189 intron SNF4Agamma + chr3R_18_21145001 chr3R_21145001 ISO1-CL-HEm12 82 chr3R 23514714 23514746 chr3R 23514884 23514916 5 163 26.0 34.0 30.0 0.2 202 chr3R 23514714 exon Irk2 - chr3R 23514815 exon Irk2 - chr3R 23514916 exon Irk2 - chr3R_5_23510001 chr3R_23510001 ISO1-CL-HEm12 83 chr3R 24076914 24076945 chr3R 24078382 24078413 hobo 13 1474 5.0 3.0 4.0 2.6 1499 chr3R 24076914 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078413 intron 4EHP - chr3R_13_24075001 chr3R_24075001 ISO1-CL-HEm12 84 chr3R 27342790 27342826 chr3R 27351372 27351407 Tirant 15 8585 5.0 3.0 4.0 3.0 8617 chr3R 27342790 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351407 intron CG42534 + chr3R_15_27345001 chr3R_27345001 ISO1-CL-HEm12 85 chr3R 27421003 27421040 chr3R 27421187 27421224 17 189 6.0 7.5 6.8 2.2 221 chr3R 27421003 intron side - chr3R 27421114 intron side - chr3R 27421224 intron side - chr3R_17_27420001 chr3R_27420001 ISO1-CL-HEm12 86 chr3R 27725566 27725593 chr3R 27731009 27731036 I-element 9 5448 6.5 2.5 4.5 1.6 5470 chr3R 27725566 intergenic not near genes chr3R 27728301 intergenic not near genes chr3R 27731036 intergenic not near genes chr3R_9_27725001 chr3R_27725001 ISO1-CL-HEm12 87 chr3R 28068491 28068522 chr3R 28073934 28073965 I-element 12 5445 8.0 9.0 8.5 1.3 5474 chr3R 28068491 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073965 intron CG34362 + chr3R_12_28070001 chr3R_28070001 ISO1-CL-HEm12 88 chr3R 29738263 29738298 chr3R 29739731 29739766 hobo 10 1465 5.5 1.5 3.5 2.2 1503 chr3R 29738263 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739766 5` UTR CG1969 + chr3R_10_29735001 chr3R_29735001 ISO1-CL-HEm12 89 chr3R 30084850 30084882 chr3R 30086318 30086350 hobo 14 1469 6.0 6.5 6.2 1.9 1500 chr3R 30084850 intron sima + chr3R 30085600 intron sima + chr3R 30086350 intron sima + chr3R_14_30085001 chr3R_30085001 ISO1-CL-HEm12 90 chr3R 31279371 31279409 chr3R 31285563 31285588 diver 16 6197 7.5 5.0 6.2 2.2 6217 chr3R 31279371 intergenic not near genes chr3R 31282480 intergenic not near genes chr3R 31285588 intergenic not near genes chr3R_16_31280001 chr3R_31280001 ISO1-CL-HEm12 91 chr3R 31691510 31691530 chr3R 31696301 31696321 Doc 5 4791 13.5 7.0 10.2 0.4 4811 chr3R 31691510 intergenic not near genes chr3R 31693916 intergenic not near genes chr3R 31696321 intergenic not near genes chr3R_5_31690001 chr3R_31690001 ISO1-CL-HEm12 92 chr3R 31691533 31691562 chr3R 31696300 31696329 Doc 21 4773 5.5 7.0 6.2 2.9 4796 chr3R 31691533 intergenic not near genes chr3R 31693931 intergenic not near genes chr3R 31696329 intergenic not near genes chr3R_21_31690001 chr3R_31690001 ISO1-CL-HEm12 93 chr4 671585 671604 chr4 680193 680212 Tirant 6 8608 17.5 19.5 18.5 0.3 8627 chr4 671585 intron CG11360 + chr4 675898 intron CG11360 + chr4 680212 intron CG11360 + chr4_6_675001 chr4_675001 ISO1-CL-HEm12 94 chr4 671608 671635 chr4 680192 680219 Tirant 29 8591 8.5 18.5 13.5 2.0 8611 chr4 671608 intron CG11360 + chr4 675914 intron CG11360 + chr4 680219 intron CG11360 + chr4_29_675001 chr4_675001 ISO1-CL-HEm12 95 chrX 1627971 1628007 chrX 1635440 1635458 gtwin 53 7468 23.5 22.5 23.0 2.2 7487 chrX 1627971 intron,intron Mur2B -,br + chrX 1631714 intron,intron Mur2B -,br + chrX 1635458 intron,intron Mur2B -,br + chrX_53_1630001 chrX_1630001 ISO1-CL-HEm12 96 chrX 6335211 6335242 chrX 6337722 6337753 Tirant 22 2515 1.0 6.5 3.8 4.6 2542 chrX 6335211 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337753 intergenic CG3842 + chrX_22_6335001 chrX_6335001 ISO1-CL-HEm12 97 chrX 6562816 6562851 chrX 6571299 6571334 Tirant 21 8492 5.0 5.0 5.0 3.5 8518 chrX 6562816 intron CG34417 + chrX 6567075 intron CG34417 + chrX 6571334 intron CG34417 + chrX_21_6565001 chrX_6565001 ISO1-CL-HEm12 98 chrX 10550853 10550887 chrX 10552320 10552355 hobo 29 1471 10.0 11.0 10.5 2.5 1502 chrX 10550853 intron spri - chrX 10551604 intron spri - chrX 10552355 intron spri - chrX_29_10550001 chrX_10550001 ISO1-CL-HEm12 99 chrX 10772673 10772698 chrX 10772757 10772806 Tirant 8 88 5.5 2.0 3.8 1.7 133 chrX 10772673 intron CG15211 + chrX 10772740 intron CG15211 + chrX 10772806 intron CG15211 + chrX_8_10770001 chrX_10770001 ISO1-CL-HEm12 100 chrX 11633392 11633448 chrX 11640471 11640503 297 22 7061 11.0 8.0 9.5 2.1 7111 chrX 11633392 intron Ptp10D + chrX 11636948 intron Ptp10D + chrX 11640503 intron Ptp10D + chrX_22_11635001 chrX_11635001 ISO1-CL-HEm12 101 chrX 13937954 13938003 chrX 13941250 13941271 I-element 12 3282 3.5 7.5 5.5 1.8 3317 chrX 13937954 intron mamo - chrX 13939612 intron mamo - chrX 13941271 intron mamo - chrX_12_13935001 chrX_13935001 ISO1-CL-HEm12 102 chrX 19613925 19613966 chrX 19614031 19614058 8 104 31.5 29.5 30.5 0.3 133 chrX 19613925 5` UTR,exon Shawn +,Tyler + chrX 19613992 exon,3` UTR Shawn +,Tyler + chrX 19614058 exon,3` UTR Shawn +,Tyler + chrX_8_19610001 chrX_19610001 ISO1-CL-HEm12 103 chrX 20377328 20377347 chrX 20378796 20378815 hobo 6 1476 5.5 7.5 6.5 0.8 1487 chrX 20377328 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378815 intergenic not near genes chrX_6_20375001 chrX_20375001 ISO1-CL-HEm12 104 chrX 20940716 20940754 chrX 20942186 20942224 hobo 29 1474 7.0 7.0 7.0 3.6 1508 chrX 20940716 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942224 intergenic not near genes chrX_29_20940001 chrX_20940001 ISO1-CL-HEm12 105 chrX 20956989 20957012 chrX 20962432 20962455 I-element 11 5445 11.5 3.0 7.2 1.3 5466 chrX 20956989 intergenic not near genes chrX 20959722 intergenic not near genes chrX 20962455 intergenic Ser6 - chrX_11_20955001 chrX_20955001 ISO1-CL-HEm12 106 chrY 311341 311345 chrY 311459 311463 13 117 0.5 0.0 0.2 10.8 122 chrY 311341 intergenic not near genes chrY 311402 intergenic not near genes chrY 311463 intergenic not near genes chrY_13_310001 chrY_310001 ISO1-CL-HEm12