SV# Chr Chr_coord_5p Chr_coord_3p TE TE_coord_start TE_coord_end Reads_collapsed Chr_Coord_Dist Symmetry avg_blat_score Norm_RefGen_Reads Coverage_Ratio classification comments insert_code loci_code Sym_score libname 1 chr2L 137881 138007 HMS-Beagle 7035 1 86 126 '36-50 66.82 22.1 3.7 intron CG11455 + chr2L_86_135001 chr2L_135001 0.42 ISO1-BL 2 chr2L 1068653 1068778 FB 1 3 100 125 '53-47 64.72 22.7 4.2 intron S - chr2L_100_1065001 chr2L_1065001 0.53 ISO1-BL 3 chr2L 1678633 1678685 F-element 10 63 41 52 '22-19 62.39 28.3 1.4 intron chinmo + chr2L_41_1675001 chr2L_1675001 0.54 ISO1-BL 4 chr2L 2014725 2014851 hobo 2936 1 81 126 '39-42 65.03 24.3 3.2 intron CG4238 + chr2L_81_2010001 chr2L_2010001 0.48 ISO1-BL 5 chr2L 2613513 2613562 I-element 5350 5301 45 49 '21-24 63.66 23.1 1.9 intergenic not near genes chr2L_45_2610001 chr2L_2610001 0.47 ISO1-BL 6 chr2L 5146361 5146475 roo 8674 401 28 114 '14-14 66.32 33.0 0.8 intron Msp300 + chr2L_28_5145001 chr2L_5145001 0.50 ISO1-BL 7 chr2L 5298989 5299126 Tirant 401 1 114 137 '61-53 68.02 22.9 4.8 intron vri + chr2L_114_5295001 chr2L_5295001 0.54 ISO1-BL 8 chr2L 5654406 5654533 hobo 2937 1 78 127 '36-42 65.54 22.3 3.3 intron CG31646 - chr2L_78_5650001 chr2L_5650001 0.46 ISO1-BL 9 chr2L 5931929 5932056 hobo 1 2937 100 127 '51-49 63.74 23.1 4.1 intron dsf + chr2L_100_5930001 chr2L_5930001 0.51 ISO1-BL 10 chr2L 5999659 5999785 hobo 3 2938 118 126 '58-60 64.64 20.1 5.6 intergenic lid - chr2L_118_5995001 chr2L_5995001 0.49 ISO1-BL 11 chr2L 6572366 6572495 hobo 2708 4 94 129 '51-43 67.52 24.1 3.7 3` UTR CG11319 - chr2L_94_6570001 chr2L_6570001 0.54 ISO1-BL 12 chr2L 6594241 6594336 hobo 3 2907 59 95 '40-19 64.82 26.1 2.2 intron CG11319 - chr2L_59_6590001 chr2L_6590001 0.68 ISO1-BL 13 chr2L 7482807 7482859 F-element 14 66 57 52 '24-33 62.22 25.6 2.1 exon Ziz - chr2L_57_7480001 chr2L_7480001 0.42 ISO1-BL 14 chr2L 7546049 7546179 Tirant 8115 401 105 130 '35-70 66.09 22.1 4.5 intron RapGAP1 - chr2L_105_7545001 chr2L_7545001 0.33 ISO1-BL 15 chr2L 7566731 7566853 roo 400 8666 80 122 '47-33 68.40 22.6 3.4 intron RapGAP1 - chr2L_80_7565001 chr2L_7565001 0.59 ISO1-BL 16 chr2L 8741196 8741339 F-element 4676 17 102 143 '46-56 68.28 21.0 4.6 intergenic not near genes chr2L_102_8740001 chr2L_8740001 0.45 ISO1-BL 17 chr2L 9485261 9485390 hobo 2710 2 103 129 '53-50 65.17 23.4 4.2 intergenic not near genes chr2L_103_9485001 chr2L_9485001 0.51 ISO1-BL 18 chr2L 9874636 9874762 hobo 1 2936 61 126 '57-4 66.25 23.0 2.5 intron nAChRalpha6 - chr2L_61_9870001 chr2L_9870001 0.93 ISO1-BL 19 chr2L 10050703 10050827 hobo 4 2937 96 124 '47-49 62.92 25.3 3.7 exon CG33301 + chr2L_96_10050001 chr2L_10050001 0.49 ISO1-BL 20 chr2L 10191278 10191328 F-element 11 61 20 50 '9-11 62.01 42.2 0.5 intron,exon Sur -,CG31874 - chr2L_20_10190001 chr2L_10190001 0.45 ISO1-BL 21 chr2L 11172855 11172902 F-element 14 61 7 47 '3-4 64.61 46.3 0.1 intron Ca-beta - chr2L_7_11170001 chr2L_11170001 0.43 ISO1-BL 22 chr2L 11810956 11810986 F-element 53 23 8 30 '2-6 53.83 48.3 0.2 3` UTR CycY - chr2L_8_11810001 chr2L_11810001 0.25 ISO1-BL 23 chr2L 12137660 12137705 F-element 11 56 44 45 '24-20 57.22 28.2 1.5 intergenic Gr33a + chr2L_44_12135001 chr2L_12135001 0.55 ISO1-BL 24 chr2L 13731335 13731464 hobo 2710 2 91 129 '43-48 64.45 23.7 3.7 intergenic not near genes chr2L_91_13730001 chr2L_13730001 0.47 ISO1-BL 25 chr2L 13734747 13734802 Doc 9 4 23 55 '12-11 63.90 37.9 0.6 intergenic not near genes chr2L_23_13730001 chr2L_13730001 0.52 ISO1-BL 26 chr2L 14554730 14554770 F-element 9 49 4 40 '1-3 60.65 53.7 0.1 intergenic not near genes chr2L_4_14550001 chr2L_14550001 0.25 ISO1-BL 27 chr2L 14717054 14717097 I-element 5306 5346 42 43 '23-19 62.73 23.6 1.7 intergenic not near genes chr2L_42_14715001 chr2L_14715001 0.55 ISO1-BL 28 chr2L 15013816 15013932 hobo 7 2933 97 116 '47-50 65.73 17.3 5.3 intergenic not near genes chr2L_97_15010001 chr2L_15010001 0.48 ISO1-BL 29 chr2L 15974022 15974145 hobo 3 2937 83 123 '46-37 60.92 21.4 3.7 intergenic not near genes chr2L_83_15970001 chr2L_15970001 0.55 ISO1-BL 30 chr2L 17644407 17644537 hobo 2709 2 72 130 '32-40 65.33 20.8 3.3 intergenic CR45699 - chr2L_72_17640001 chr2L_17640001 0.44 ISO1-BL 31 chr2L 17729736 17729863 hobo 1 2937 86 127 '39-47 64.39 20.7 4.0 intron CadN - chr2L_86_17725001 chr2L_17725001 0.45 ISO1-BL 32 chr2L 18341152 18341201 Doc 43 1 42 49 '18-24 66.32 30.3 1.3 intron Fas3 + chr2L_42_18340001 chr2L_18340001 0.43 ISO1-BL 33 chr2L 18665275 18665329 Doc 57 3 56 54 '26-30 64.58 29.6 1.8 intergenic not near genes chr2L_56_18665001 chr2L_18665001 0.46 ISO1-BL 34 chr2L 19422011 19422093 Doc 150 51 55 82 '11-44 60.81 26.5 2.0 intron Pax - chr2L_55_19420001 chr2L_19420001 0.20 ISO1-BL 35 chr2L 19550251 19550380 HMS-Beagle 244 6799 73 129 '39-34 66.32 23.9 2.9 intron Tep4 + chr2L_73_19550001 chr2L_19550001 0.53 ISO1-BL 36 chr2L 19702514 19702640 hobo 2937 1 85 126 '41-44 64.73 24.0 3.4 intron Lar + chr2L_85_19700001 chr2L_19700001 0.48 ISO1-BL 37 chr2L 20428031 20428082 F-element 62 11 25 51 '11-14 68.66 55.4 0.4 intergenic not near genes chr2L_25_20425001 chr2L_20425001 0.44 ISO1-BL 38 chr2L 20858256 20858386 copia 4869 253 99 130 '51-48 66.82 22.0 4.3 intergenic CG14400 -,CG9336 + chr2L_99_20855001 chr2L_20855001 0.52 ISO1-BL 39 chr2L 21049444 21049571 FB 1 1 92 127 '45-47 64.71 21.7 4.1 intron CG42238 - chr2L_92_21045001 chr2L_21045001 0.49 ISO1-BL 40 chr2L 21400691 21400815 Doc3-element 3 4719 23 124 '16-7 59.28 33.1 0.7 intergenic not near genes chr2L_23_21400001 chr2L_21400001 0.70 ISO1-BL 41 chr2L 21795206 21795335 copia 256 4873 102 129 '46-56 65.30 24.9 3.9 intron CG31612 - chr2L_102_21795001 chr2L_21795001 0.45 ISO1-BL 42 chr2L 22153837 22153965 copia 253 4871 6 128 '2-4 68.75 34.8 0.2 intron CG42748 + chr2L_6_22150001 chr2L_22150001 0.33 ISO1-BL 43 chr2L 22242574 22242623 F-element 61 12 28 49 '20-8 61.93 24.7 1.1 3` UTR CG3262 + chr2L_28_22240001 chr2L_22240001 0.71 ISO1-BL 44 chr2L 22307062 22307164 copia 252 22 5 102 '3-2 62.38 34.6 0.1 intergenic not near genes chr2L_5_22305001 chr2L_22305001 0.60 ISO1-BL 45 chr2L 22445985 22446016 Doc 39 6 6 31 '4-2 65.17 42.6 0.1 intergenic not near genes chr2L_6_22445001 chr2L_22445001 0.67 ISO1-BL 46 chr2R 2879430 2879488 Stalker 87 6994 20 58 '10-10 63.20 45.4 0.4 intergenic not near genes chr2R_20_2875001 chr2R_2875001 0.50 ISO1-BL 47 chr2R 2879455 2879486 Stalker4 112 143 15 31 '9-6 59.34 57.4 0.3 intergenic not near genes chr2R_15_2875001 chr2R_2875001 0.60 ISO1-BL 48 chr2R 2879963 2879997 TLD2_LTR 35 69 41 34 '23-18 60.42 28.4 1.4 intergenic not near genes chr2R_41_2875001 chr2R_2875001 0.56 ISO1-BL 49 chr2R 2879964 2880005 invader2 47 5058 8 41 '3-5 70.62 24.7 0.3 intergenic not near genes chr2R_8_2875001 chr2R_2875001 0.38 ISO1-BL 50 chr2R 3146324 3146359 Quasimodo 79 26 4 35 '2-2 64.61 40.3 0.1 intron CG42596 + chr2R_4_3145001 chr2R_3145001 0.50 ISO1-BL 51 chr2R 3146436 3146490 rover 7136 7062 28 54 '23-5 59.38 39.0 0.7 intron CG42596 + chr2R_28_3145001 chr2R_3145001 0.82 ISO1-BL 52 chr2R 5284557 5284601 accord 7381 491 6 44 '1-5 69.59 48.1 0.1 intron d4 + chr2R_6_5280001 chr2R_5280001 0.17 ISO1-BL 53 chr2R 5467813 5467997 F-element 13 4627 55 184 '53-2 64.06 20.8 2.5 intergenic not near genes chr2R_55_5465001 chr2R_5465001 0.96 ISO1-BL 54 chr2R 5609046 5609152 FB 7 15 5 106 '2-3 67.87 29.8 0.2 exon CG17508 + chr2R_5_5605001 chr2R_5605001 0.40 ISO1-BL 55 chr2R 5620715 5620757 copia 4880 4922 16 42 '6-10 65.36 43.7 0.4 intergenic not near genes chr2R_16_5620001 chr2R_5620001 0.38 ISO1-BL 56 chr2R 5941907 5941961 Doc 56 3 55 54 '32-23 64.80 26.5 2.0 intergenic not near genes chr2R_55_5940001 chr2R_5940001 0.58 ISO1-BL 57 chr2R 6187835 6188090 Tirant 8108 2 168 255 '102-66 67.20 14.5 10.8 intron Ptr - chr2R_168_6185001 chr2R_6185001 0.61 ISO1-BL 58 chr2R 6507071 6507197 FB 2 1 90 126 '44-46 66.72 23.1 3.7 intron jing + chr2R_90_6505001 chr2R_6505001 0.49 ISO1-BL 59 chr2R 6629971 6630015 Stalker3T 202 201 156 44 '155-1 60.12 54.3 2.8 intron Vha16-1 - chr2R_156_6625001 chr2R_6625001 0.99 ISO1-BL 60 chr2R 7131281 7131412 roo 409 8666 109 131 '55-54 66.91 27.1 3.9 intron Cyp9b2 - chr2R_109_7130001 chr2R_7130001 0.50 ISO1-BL 61 chr2R 7487456 7487587 copia 257 3 88 131 '49-39 66.34 23.8 3.5 intron wech - chr2R_88_7485001 chr2R_7485001 0.56 ISO1-BL 62 chr2R 7885058 7885169 hobo 2938 18 4 111 '3-1 64.14 35.1 0.1 intron Dgk - chr2R_4_7885001 chr2R_7885001 0.75 ISO1-BL 63 chr2R 7954379 7954502 roo 399 8664 103 123 '52-51 69.65 23.4 4.2 intron CG14764 - chr2R_103_7950001 chr2R_7950001 0.50 ISO1-BL 64 chr2R 8528862 8528983 I-element 5347 200 101 121 '36-65 65.98 21.9 4.4 intron mtt - chr2R_101_8525001 chr2R_8525001 0.36 ISO1-BL 65 chr2R 8651978 8652026 F-element 61 13 50 48 '29-21 63.22 31.0 1.6 intron ptc + chr2R_50_8650001 chr2R_8650001 0.58 ISO1-BL 66 chr2R 8745504 8745552 F-element 66 18 49 48 '27-22 63.44 18.9 2.5 intron CG8740 + chr2R_49_8745001 chr2R_8745001 0.55 ISO1-BL 67 chr2R 9016513 9016650 Tirant 401 8108 96 137 '57-39 65.77 19.4 4.7 exon CG13744 - chr2R_96_9015001 chr2R_9015001 0.59 ISO1-BL 68 chr2R 9273301 9273369 FB 37 24 5 68 '2-3 61.73 43.5 0.1 intron Pkn - chr2R_5_9270001 chr2R_9270001 0.40 ISO1-BL 69 chr2R 9789931 9790067 HMS-Beagle 246 6794 88 136 '40-48 66.67 21.4 3.9 intron,5` UTR CG1688 -,CR44208 + chr2R_88_9785001 chr2R_9785001 0.45 ISO1-BL 70 chr2R 10044670 10044796 FB 1 2 102 126 '48-54 66.93 25.1 3.9 intron,5` UTR oys -,CR44295 + chr2R_102_10040001 chr2R_10040001 0.47 ISO1-BL 71 chr2R 10355617 10355734 copia 251 4880 10 117 '5-5 62.92 28.7 0.3 intron,5` UTR,exon CG42732 -,CG12902 -,CG43397 - chr2R_10_10355001 chr2R_10355001 0.50 ISO1-BL 72 chr2R 10977567 10977618 F-element 13 57 40 51 '14-26 64.33 28.4 1.4 intergenic not near genes chr2R_40_10975001 chr2R_10975001 0.35 ISO1-BL 73 chr2R 13586608 13586660 F-element 9 61 44 52 '23-21 63.49 24.5 1.7 intron,intron CG6191 -,CG45088 - chr2R_44_13585001 chr2R_13585001 0.52 ISO1-BL 74 chr2R 13996092 13996185 FB 16 20 5 93 '4-1 62.78 35.7 0.1 intron mam + chr2R_5_13995001 chr2R_13995001 0.80 ISO1-BL 75 chr2R 14013785 14013839 Doc 3 57 49 54 '25-24 66.04 27.8 1.7 intron mam + chr2R_49_14010001 chr2R_14010001 0.51 ISO1-BL 76 chr2R 14761177 14761229 F-element 64 12 49 52 '22-27 63.27 24.3 1.9 3` UTR Spred - chr2R_49_14760001 chr2R_14760001 0.45 ISO1-BL 77 chr2R 16127206 16127332 FB 2 1 107 126 '50-57 66.26 25.5 4.0 intron spin + chr2R_107_16125001 chr2R_16125001 0.47 ISO1-BL 78 chr2R 16373981 16374107 hobo 2938 3 119 126 '63-56 63.93 25.8 4.4 intergenic not near genes chr2R_119_16370001 chr2R_16370001 0.53 ISO1-BL 79 chr2R 16979652 16979784 HMS-Beagle 7041 6797 78 132 '33-45 66.55 20.9 3.6 intron Cbp53E + chr2R_78_16975001 chr2R_16975001 0.42 ISO1-BL 80 chr2R 17109837 17110096 diver 110 5894 116 259 '1-115 65.32 20.9 5.3 intron CG15611 + chr2R_116_17105001 chr2R_17105001 0.01 ISO1-BL 81 chr2R 17459759 17459885 FB 2 1 98 126 '46-52 64.41 10.9 8.2 intron CG14478 + chr2R_98_17455001 chr2R_17455001 0.47 ISO1-BL 82 chr2R 17485060 17485111 F-element 13 61 55 51 '31-24 64.33 55.7 1.0 5` UTR,5` UTR CG43110 -,NT5E-2 + chr2R_55_17485001 chr2R_17485001 0.56 ISO1-BL 83 chr2R 18763881 18764016 diver 5887 226 121 135 '57-64 64.61 22.7 5.1 intron Mctp + chr2R_121_18760001 chr2R_18760001 0.47 ISO1-BL 84 chr2R 19257477 19257612 Tirant 401 3 105 135 '61-44 66.68 23.9 4.2 intergenic not near genes chr2R_105_19255001 chr2R_19255001 0.58 ISO1-BL 85 chr2R 19394594 19394720 copia 4870 250 113 126 '51-62 66.43 23.1 4.7 intron SdhA - chr2R_113_19390001 chr2R_19390001 0.45 ISO1-BL 86 chr2R 19526895 19527026 hobo 2707 3 77 131 '32-45 64.16 23.0 3.2 3` UTR sm - chr2R_77_19525001 chr2R_19525001 0.42 ISO1-BL 87 chr2R 19768184 19768307 copia 251 5 97 123 '56-41 66.68 20.7 4.5 intergenic not near genes chr2R_97_19765001 chr2R_19765001 0.58 ISO1-BL 88 chr2R 19792357 19792491 Tirant 399 1 111 134 '59-52 65.66 19.4 5.4 intergenic not near genes chr2R_111_19790001 chr2R_19790001 0.53 ISO1-BL 89 chr2R 20440513 20440637 hobo 4 2937 62 124 '19-43 67.24 21.0 2.8 intron CG12484 + chr2R_62_20440001 chr2R_20440001 0.31 ISO1-BL 90 chr2R 21111992 21112042 Doc 1 51 63 50 '29-34 62.91 34.8 1.8 intron ktub + chr2R_63_21110001 chr2R_21110001 0.46 ISO1-BL 91 chr2R 21415565 21415610 Doc 5 50 17 45 '8-9 62.94 44.4 0.4 intron Sdc - chr2R_17_21415001 chr2R_21415001 0.47 ISO1-BL 92 chr2R 21605847 21605968 roo 9060 8663 38 121 '18-20 71.50 29.3 1.3 3` UTR CG10433 - chr2R_38_21605001 chr2R_21605001 0.47 ISO1-BL 93 chr2R 22786248 22786444 hobo 2938 1 89 196 '50-39 64.94 15.9 5.3 intron CG42260 - chr2R_89_22785001 chr2R_22785001 0.56 ISO1-BL 94 chr2R 23818608 23818655 F-element 12 58 15 47 '7-8 63.68 51.7 0.3 intergenic CG4797 - chr2R_15_23815001 chr2R_23815001 0.47 ISO1-BL 95 chr2R 24340348 24340721 FB 1 32 93 373 '90-3 65.76 21.7 4.1 intergenic not near genes chr2R_93_24340001 chr2R_24340001 0.97 ISO1-BL 96 chr3L 40551 40603 Tirant 348 400 24 52 '10-14 68.31 31.2 0.7 intergenic not near genes chr3L_24_40001 chr3L_40001 0.42 ISO1-BL 97 chr3L 512911 513016 FB 11 13 12 105 '6-6 63.62 25.6 0.5 intron klar - chr3L_12_510001 chr3L_510001 0.50 ISO1-BL 98 chr3L 814087 814216 roo 406 1 68 129 '30-38 67.13 27.0 2.4 5` UTR CR44537 + chr3L_68_810001 chr3L_810001 0.44 ISO1-BL 99 chr3L 833064 833116 Doc 61 9 35 52 '14-21 64.07 55.7 0.6 intron,3` UTR CG13900 -,snoRNA:Psi18S-1086 - chr3L_35_830001 chr3L_830001 0.40 ISO1-BL 100 chr3L 1281840 1281929 roo 9034 8670 14 89 '4-10 69.34 34.3 0.4 intron CG32333 + chr3L_14_1280001 chr3L_1280001 0.29 ISO1-BL 101 chr3L 1592290 1592361 FB 2 56 22 71 '18-4 65.12 32.8 0.7 intron CG13917 + chr3L_22_1590001 chr3L_1590001 0.82 ISO1-BL 102 chr3L 2162698 2162820 I-element 1 5350 108 122 '58-50 64.79 21.4 4.8 intron CG15822 - chr3L_108_2160001 chr3L_2160001 0.54 ISO1-BL 103 chr3L 2717570 2717703 roo 408 8663 113 133 '56-57 66.69 20.1 5.4 intergenic Mrtf - chr3L_113_2715001 chr3L_2715001 0.50 ISO1-BL 104 chr3L 3616906 3617036 copia 256 4872 42 130 '25-17 67.67 25.6 1.6 intergenic CG10357 + chr3L_42_3615001 chr3L_3615001 0.60 ISO1-BL 105 chr3L 4390337 4390468 roo 1 408 112 131 '53-59 66.73 23.9 4.5 intron slow + chr3L_112_4390001 chr3L_4390001 0.47 ISO1-BL 106 chr3L 4703428 4703548 FB 3 6 40 120 '19-21 67.04 29.8 1.3 intron,5` UTR RhoGEF64C +,CR43879 + chr3L_40_4700001 chr3L_4700001 0.47 ISO1-BL 107 chr3L 6051835 6051960 hobo 2709 7 56 125 '14-42 65.29 19.2 2.8 intergenic Jon65Aiii +,Jon65Aii + chr3L_56_6050001 chr3L_6050001 0.25 ISO1-BL 108 chr3L 7967877 7968001 hobo 2 2935 94 124 '48-46 64.45 21.1 4.3 intergenic not near genes chr3L_94_7965001 chr3L_7965001 0.51 ISO1-BL 109 chr3L 9290539 9290663 hobo 1 2936 84 124 '38-46 62.01 21.2 3.8 intergenic not near genes chr3L_84_9290001 chr3L_9290001 0.45 ISO1-BL 110 chr3L 9787640 9787688 jockey 4938 4986 29 48 '13-16 65.12 31.3 0.9 intergenic Zasp67 - chr3L_29_9785001 chr3L_9785001 0.45 ISO1-BL 111 chr3L 10055711 10055836 hobo 3 2937 93 125 '47-46 65.85 23.1 3.9 intron dpr6 + chr3L_93_10055001 chr3L_10055001 0.51 ISO1-BL 112 chr3L 10109596 10109731 copia 256 4867 68 135 '23-45 65.39 23.9 2.7 intron dpr6 + chr3L_68_10105001 chr3L_10105001 0.34 ISO1-BL 113 chr3L 10430766 10430891 roo 8665 403 50 125 '25-25 67.42 28.5 1.7 exon Ir67b - chr3L_50_10430001 chr3L_10430001 0.50 ISO1-BL 114 chr3L 11689078 11689128 Doc 5 55 27 50 '15-12 68.24 40.8 0.6 intron Sug + chr3L_27_11685001 chr3L_11685001 0.56 ISO1-BL 115 chr3L 11915553 11915668 hobo 2929 5 19 115 '13-6 63.67 31.0 0.6 intron CG44837 - chr3L_19_11915001 chr3L_11915001 0.68 ISO1-BL 116 chr3L 12035576 12035713 copia 4866 257 108 137 '69-39 66.69 16.8 6.1 intron rols - chr3L_108_12035001 chr3L_12035001 0.64 ISO1-BL 117 chr3L 12484800 12484894 roo 1 9047 4 94 '1-3 72.95 32.8 0.1 5` UTR,intron CG10663 -,CG33725 + chr3L_4_12480001 chr3L_12480001 0.25 ISO1-BL 118 chr3L 13613595 13613721 hobo 2937 2 91 126 '51-40 64.89 21.3 4.1 intron bru-3 - chr3L_91_13610001 chr3L_13610001 0.56 ISO1-BL 119 chr3L 14326486 14326604 FB 7 4 13 118 '4-9 67.30 37.9 0.3 intron fz + chr3L_13_14325001 chr3L_14325001 0.31 ISO1-BL 120 chr3L 15713433 15713563 roo 409 3 97 130 '50-47 65.74 20.8 4.4 intergenic not near genes chr3L_97_15710001 chr3L_15710001 0.52 ISO1-BL 121 chr3L 16002224 16002351 FB 1 1 102 127 '44-58 65.99 19.7 4.9 intron CG5830 - chr3L_102_16000001 chr3L_16000001 0.43 ISO1-BL 122 chr3L 16055228 16055354 FB 1 2 82 126 '44-38 66.22 20.7 3.8 intron Mbs + chr3L_82_16055001 chr3L_16055001 0.54 ISO1-BL 123 chr3L 17717642 17717679 F-element 49 12 33 37 '21-12 58.00 26.0 1.2 intron Ccn + chr3L_33_17715001 chr3L_17715001 0.64 ISO1-BL 124 chr3L 18645637 18645693 Doc 61 5 47 56 '25-22 65.31 22.0 2.0 intron MYPT-75D + chr3L_47_18645001 chr3L_18645001 0.53 ISO1-BL 125 chr3L 18811327 18811482 roo 409 81 117 155 '53-64 66.75 24.7 4.6 intron CG14073 - chr3L_117_18810001 chr3L_18810001 0.45 ISO1-BL 126 chr3L 19873031 19873083 Doc 4685 4633 41 52 '22-19 66.44 27.5 1.4 intron CG8334 + chr3L_41_19870001 chr3L_19870001 0.54 ISO1-BL 127 chr3L 21115990 21116106 I-element 5348 1 109 116 '51-58 62.70 22.9 4.6 intron ko - chr3L_109_21115001 chr3L_21115001 0.47 ISO1-BL 128 chr3L 21242718 21242776 Doc 60 2 69 58 '41-28 66.77 24.9 2.7 intron Eip78C + chr3L_69_21240001 chr3L_21240001 0.59 ISO1-BL 129 chr3L 22359653 22359709 Doc 4 60 61 56 '34-27 66.62 29.1 2.0 intron Ten-m - chr3L_61_22355001 chr3L_22355001 0.56 ISO1-BL 130 chr3L 22508979 22509109 diver 223 1 128 130 '65-63 63.69 22.7 5.4 intergenic not near genes chr3L_128_22505001 chr3L_22505001 0.51 ISO1-BL 131 chr3L 24037099 24037224 G3 56 8 6 125 '1-5 71.12 34.5 0.2 intergenic not near genes chr3L_6_24035001 chr3L_24035001 0.17 ISO1-BL 132 chr3L 25442435 25442552 Chimpo 172 2 43 117 '2-41 60.12 27.7 1.5 intergenic not near genes chr3L_43_25440001 chr3L_25440001 0.05 ISO1-BL 133 chr3L 25801395 25801573 Cr1a 4438 4447 7 178 '4-3 62.27 20.7 0.3 intron CG40178 - chr3L_7_25800001 chr3L_25800001 0.57 ISO1-BL 134 chr3L 27716627 27716677 Doc 58 8 40 50 '22-18 58.95 26.0 1.5 intergenic not near genes chr3L_40_27715001 chr3L_27715001 0.55 ISO1-BL 135 chr3R 556453 556531 Tc1-2 1590 24 9 78 '5-4 54.79 27.1 0.3 intergenic not near genes chr3R_9_555001 chr3R_555001 0.56 ISO1-BL 136 chr3R 3282360 3282480 Stalker4 39 7191 19 120 '18-1 55.68 23.5 0.8 intergenic not near genes chr3R_19_3280001 chr3R_3280001 0.95 ISO1-BL 137 chr3R 4066263 4066379 diver2 4875 4875 4 116 '3-1 78.87 28.2 0.1 intergenic not near genes chr3R_4_4065001 chr3R_4065001 0.75 ISO1-BL 138 chr3R 5066592 5066727 Tirant 400 2 100 135 '56-44 67.04 21.5 4.4 intergenic not near genes chr3R_100_5065001 chr3R_5065001 0.56 ISO1-BL 139 chr3R 5701683 5701778 297 6616 390 6 95 '4-2 71.05 24.9 0.2 intron plx + chr3R_6_5700001 chr3R_5700001 0.67 ISO1-BL 140 chr3R 5711465 5711557 roo 9036 5 6 92 '2-4 66.83 37.0 0.2 exon plx + chr3R_6_5710001 chr3R_5710001 0.33 ISO1-BL 141 chr3R 6171759 6171878 I-element 1 5349 84 119 '45-39 64.49 21.4 3.8 intergenic not near genes chr3R_84_6170001 chr3R_6170001 0.54 ISO1-BL 142 chr3R 6959745 6959861 I-element 5349 2 91 116 '43-48 65.80 21.4 4.1 intron Antp - chr3R_91_6955001 chr3R_6955001 0.47 ISO1-BL 143 chr3R 9463548 9463647 copia 4881 234 4 99 '2-2 60.40 30.8 0.1 3` UTR CG16779 - chr3R_4_9460001 chr3R_9460001 0.50 ISO1-BL 144 chr3R 9798046 9798099 Doc 2 55 46 53 '24-22 64.66 26.1 1.7 3` UTR CG9467 - chr3R_46_9795001 chr3R_9795001 0.52 ISO1-BL 145 chr3R 10168989 10169094 copia 4873 232 84 105 '55-29 65.53 22.5 3.6 intron Best1 - chr3R_84_10165001 chr3R_10165001 0.65 ISO1-BL 146 chr3R 10541170 10541264 hobo 1 2904 70 94 '48-22 64.38 24.1 2.8 intron hth - chr3R_70_10540001 chr3R_10540001 0.69 ISO1-BL 147 chr3R 12230695 12230819 roo 400 8664 109 124 '49-60 66.85 23.8 4.4 intergenic CG3916 + chr3R_109_12230001 chr3R_12230001 0.45 ISO1-BL 148 chr3R 14834410 14834537 hobo 2938 2 8 127 '2-6 75.87 20.9 0.4 intron btsz - chr3R_8_14830001 chr3R_14830001 0.25 ISO1-BL 149 chr3R 15224912 15225039 FB 1 1 101 127 '47-54 66.60 22.8 4.2 exon CG31344 - chr3R_101_15220001 chr3R_15220001 0.47 ISO1-BL 150 chr3R 15756288 15756413 hobo 3 2937 78 125 '48-30 65.68 20.3 3.7 intergenic not near genes chr3R_78_15755001 chr3R_15755001 0.62 ISO1-BL 151 chr3R 16133933 16134046 I-element 2 5349 95 113 '52-43 66.86 22.8 4.0 intron Sb + chr3R_95_16130001 chr3R_16130001 0.55 ISO1-BL 152 chr3R 16231577 16231611 F-element 160 194 33 34 '15-18 58.89 36.1 0.9 intron tara + chr3R_33_16230001 chr3R_16230001 0.45 ISO1-BL 153 chr3R 18075013 18075069 roo 351 408 30 56 '15-15 66.95 25.8 1.1 intergenic not near genes chr3R_30_18075001 chr3R_18075001 0.50 ISO1-BL 154 chr3R 18440676 18440802 FB 2 1 102 126 '54-48 64.96 24.3 4.0 intron fru - chr3R_102_18440001 chr3R_18440001 0.53 ISO1-BL 155 chr3R 19503185 19503312 hobo 1 2937 100 127 '42-58 69.56 22.4 4.3 intron Dys + chr3R_100_19500001 chr3R_19500001 0.42 ISO1-BL 156 chr3R 23390857 23390970 I-element 5348 1 93 113 '39-54 66.95 23.2 3.8 intergenic CR43387 + chr3R_93_23390001 chr3R_23390001 0.42 ISO1-BL 157 chr3R 23601277 23601403 hobo 2936 1 80 126 '45-35 63.18 21.6 3.5 intergenic not near genes chr3R_80_23600001 chr3R_23600001 0.56 ISO1-BL 158 chr3R 23724479 23724587 roo 25 409 42 108 '16-26 72.47 28.7 1.4 intron CG10365 + chr3R_42_23720001 chr3R_23720001 0.38 ISO1-BL 159 chr3R 23727060 23727186 roo 3 405 46 126 '18-28 67.24 31.9 1.4 intron CG10365 + chr3R_46_23725001 chr3R_23725001 0.39 ISO1-BL 160 chr3R 24117174 24117302 copia 254 1 65 128 '34-31 67.20 29.3 2.1 intron Rootletin + chr3R_65_24115001 chr3R_24115001 0.52 ISO1-BL 161 chr3R 24606902 24607024 hobo 2933 2 55 122 '22-33 64.06 24.4 2.2 intron mld + chr3R_55_24605001 chr3R_24605001 0.40 ISO1-BL 162 chr3R 24684603 24684936 hobo 2936 4 47 333 '27-20 65.47 10.4 4.1 intron slo + chr3R_47_24680001 chr3R_24680001 0.57 ISO1-BL 163 chr3R 24865965 24866024 Doc 119 59 57 59 '30-27 66.06 30.0 1.8 intron Ela + chr3R_57_24865001 chr3R_24865001 0.53 ISO1-BL 164 chr3R 25052573 25052697 FB 4 1 98 124 '45-53 65.48 23.7 4.0 exon CG11791 + chr3R_98_25050001 chr3R_25050001 0.46 ISO1-BL 165 chr3R 25125928 25125984 1360 3363 2 6 56 '5-1 61.39 53.2 0.1 3` UTR,exon CG42503 -,Mocs2 - chr3R_6_25125001 chr3R_25125001 0.83 ISO1-BL 166 chr3R 25354734 25354851 copia 3 243 12 117 '7-5 66.75 33.1 0.4 intron Fur1 - chr3R_12_25350001 chr3R_25350001 0.58 ISO1-BL 167 chr3R 25508201 25508328 hobo 5 2709 51 127 '27-24 66.44 31.1 1.6 exon CG5111 + chr3R_51_25505001 chr3R_25505001 0.53 ISO1-BL 168 chr3R 25858785 25858819 Idefix 11 45 9 34 '3-6 63.04 59.6 0.1 intron CG5890 + chr3R_9_25855001 chr3R_25855001 0.33 ISO1-BL 169 chr3R 26093344 26093472 F-element 11 4671 24 128 '23-1 64.49 30.5 0.8 intron,3` UTR dys -,CR44319 - chr3R_24_26090001 chr3R_26090001 0.96 ISO1-BL 170 chr3R 26196663 26196777 I-element 5349 2 79 114 '39-40 66.21 24.4 3.1 intron CR44320 + chr3R_79_26195001 chr3R_26195001 0.49 ISO1-BL 171 chr3R 26629525 26629582 F-element 13 32 47 57 '26-21 66.02 28.0 1.6 intergenic TwdlJ + chr3R_47_26625001 chr3R_26625001 0.55 ISO1-BL 172 chr3R 26795538 26795659 hobo 5 2935 85 121 '47-38 66.22 21.2 3.8 intergenic not near genes chr3R_85_26795001 chr3R_26795001 0.55 ISO1-BL 173 chr3R 27608113 27608216 Tirant 8136 395 11 103 '2-9 64.48 32.7 0.3 5` UTR Tusp + chr3R_11_27605001 chr3R_27605001 0.18 ISO1-BL 174 chr3R 27618855 27618982 copia 5 255 10 127 '8-2 65.90 31.3 0.3 intron Tusp + chr3R_10_27615001 chr3R_27615001 0.80 ISO1-BL 175 chr3R 27684213 27684269 F-element 9 63 59 56 '37-22 63.27 29.1 2.0 intergenic not near genes chr3R_59_27680001 chr3R_27680001 0.63 ISO1-BL 176 chr3R 27853106 27853233 hobo 2937 1 73 127 '42-31 64.19 20.3 3.4 intron CG34353 - chr3R_73_27850001 chr3R_27850001 0.58 ISO1-BL 177 chr3R 27897884 27897998 FB 13 2 4 114 '2-2 63.67 34.2 0.1 intron CG34353 - chr3R_4_27895001 chr3R_27895001 0.50 ISO1-BL 178 chr3R 28216977 28217034 Doc 61 4 54 57 '27-27 66.11 24.8 2.1 intron CG34354 + chr3R_54_28215001 chr3R_28215001 0.50 ISO1-BL 179 chr3R 28714186 28714317 roo 407 8664 9 131 '5-4 69.16 37.3 0.2 exon htt + chr3R_9_28710001 chr3R_28710001 0.56 ISO1-BL 180 chr3R 29004905 29005022 roo 4 397 13 117 '5-8 67.82 33.4 0.4 intron wat - chr3R_13_29000001 chr3R_29000001 0.38 ISO1-BL 181 chr3R 29777197 29777247 F-element 59 10 52 50 '30-22 62.49 1.9 17.9 intron kay + chr3R_52_29775001 chr3R_29775001 0.58 ISO1-BL 182 chr3R 30156398 30156450 roo 8719 1 48 52 '24-24 68.52 22.7 2.0 intron CG11498 - chr3R_48_30155001 chr3R_30155001 0.50 ISO1-BL 183 chr3R 31887288 31887412 Tirant 7 394 61 124 '32-29 65.29 27.3 2.2 intron heph - chr3R_61_31885001 chr3R_31885001 0.52 ISO1-BL 184 chr4 940322 940374 Doc 6 58 41 52 '16-25 68.41 31.5 1.3 exon mGluR + chr4_41_940001 chr4_940001 0.39 ISO1-BL 185 chrX 691379 691502 FB 3 3 54 123 '29-25 64.34 12.3 4.1 intron sdk + chrX_54_690001 chrX_690001 0.54 ISO1-BL 186 chrX 861773 861828 Doc 9 7 23 55 '10-13 66.17 15.4 1.4 intron CG43867 - chrX_23_860001 chrX_860001 0.43 ISO1-BL 187 chrX 1134548 1134649 Tirant 8112 8476 4 101 '3-1 65.85 17.4 0.2 5` UTR CG3655 - chrX_4_1130001 chrX_1130001 0.75 ISO1-BL 188 chrX 1599902 1600023 hobo 1 2931 41 121 '21-20 67.99 6.0 5.9 intron,intron Mur2B -,br + chrX_41_1595001 chrX_1595001 0.51 ISO1-BL 189 chrX 1986153 1986243 I-element 10 5328 34 90 '21-13 61.04 12.9 2.4 intron Hr4 + chrX_34_1985001 chrX_1985001 0.62 ISO1-BL 190 chrX 2066330 2066442 copia 4888 254 11 112 '7-4 67.29 19.4 0.5 5` UTR CG14054 - chrX_11_2065001 chrX_2065001 0.64 ISO1-BL 191 chrX 2747810 2747936 FB 1 2 41 126 '21-20 65.61 13.7 2.8 intron kirre + chrX_41_2745001 chrX_2745001 0.51 ISO1-BL 192 chrX 3378287 3378425 Tirant 8108 402 53 138 '28-25 66.91 10.3 4.7 intron,intron CR44999 +,dm + chrX_53_3375001 chrX_3375001 0.53 ISO1-BL 193 chrX 3391354 3391433 Idefix 8 7362 9 79 '2-7 77.03 19.0 0.5 intron,3` UTR,3` UTR CR44999 +,dm +,CG12535 - chrX_9_3390001 chrX_3390001 0.22 ISO1-BL 194 chrX 3391354 3391433 mdg1 39 384 9 79 '1-8 67.99 19.0 0.5 intron,3` UTR,3` UTR CR44999 +,dm +,CG12535 - chrX_9_3390001 chrX_3390001 0.11 ISO1-BL 195 chrX 3391355 3391433 McClintock 51 365 13 78 '4-9 68.72 19.2 0.6 intron,3` UTR,3` UTR CR44999 +,dm +,CG12535 - chrX_13_3390001 chrX_3390001 0.31 ISO1-BL 196 chrX 3391357 3391433 F-element 89 146 9 76 '1-8 62.38 19.6 0.4 intron,3` UTR,3` UTR CR44999 +,dm +,CG12535 - chrX_9_3390001 chrX_3390001 0.11 ISO1-BL 197 chrX 3641505 3641629 diver 5894 222 47 124 '21-26 62.78 12.5 3.5 intron AstA-R1 + chrX_47_3640001 chrX_3640001 0.45 ISO1-BL 198 chrX 3717594 3717708 FB 8 7 6 114 '2-4 72.12 18.1 0.3 intron Rala - chrX_6_3715001 chrX_3715001 0.33 ISO1-BL 199 chrX 4133286 4133371 copia 254 46 33 85 '21-12 66.41 11.5 2.6 3` UTR Fas2 - chrX_33_4130001 chrX_4130001 0.64 ISO1-BL 200 chrX 4490197 4490278 FB 1 44 6 81 '4-2 68.17 14.8 0.4 intron CR32773 - chrX_6_4490001 chrX_4490001 0.67 ISO1-BL 201 chrX 4609699 4609813 FB 10 1 13 114 '7-6 65.07 15.5 0.8 intron CR32773 - chrX_13_4605001 chrX_4605001 0.54 ISO1-BL 202 chrX 4986617 4986744 copia 252 1 48 127 '21-27 65.91 12.3 3.6 intron CR44833 - chrX_48_4985001 chrX_4985001 0.44 ISO1-BL 203 chrX 5043250 5043300 F-element 62 12 26 50 '16-10 61.63 9.0 2.6 intron CR44833 - chrX_26_5040001 chrX_5040001 0.62 ISO1-BL 204 chrX 5753728 5753779 Doc 3 23 33 51 '14-19 61.75 17.3 1.8 3` UTR,3` UTR CG15772 +,lin-52 - chrX_33_5750001 chrX_5750001 0.42 ISO1-BL 205 chrX 6505566 6505620 roo 8666 8720 12 54 '5-7 68.65 11.7 0.9 intron CG42340 - chrX_12_6505001 chrX_6505001 0.42 ISO1-BL 206 chrX 6542904 6543018 I-element 2 5345 55 114 '29-26 64.23 11.7 4.3 intron CG34417 + chrX_55_6540001 chrX_6540001 0.53 ISO1-BL 207 chrX 7626199 7626244 297 6629 3 27 45 '13-14 65.27 14.7 1.7 intron ct + chrX_27_7625001 chrX_7625001 0.48 ISO1-BL 208 chrX 7905214 7905324 Doc 4684 4 35 110 '2-33 63.82 13.7 2.4 3` UTR dpr14 - chrX_35_7905001 chrX_7905001 0.06 ISO1-BL 209 chrX 8516757 8516807 F-element 63 15 26 50 '16-10 65.95 15.9 1.5 3` UTR CG33181 + chrX_26_8515001 chrX_8515001 0.62 ISO1-BL 210 chrX 8947275 8947332 hobo 2937 2900 25 57 '10-15 66.86 14.5 1.6 intron rdgA + chrX_25_8945001 chrX_8945001 0.40 ISO1-BL 211 chrX 9342063 9342174 FB 14 4 5 111 '3-2 67.54 17.0 0.3 intron CG34449 - chrX_5_9340001 chrX_9340001 0.60 ISO1-BL 212 chrX 10556247 10556301 Doc 1 55 28 54 '13-15 67.56 3.9 5.7 intron spri - chrX_28_10555001 chrX_10555001 0.46 ISO1-BL 213 chrX 10757660 10757780 hobo 4 2933 55 120 '34-21 66.61 15.5 3.3 5` UTR Rph - chrX_55_10755001 chrX_10755001 0.62 ISO1-BL 214 chrX 11955872 11955919 Doc 168 9 33 47 '16-17 62.04 16.9 1.8 intron cac - chrX_33_11955001 chrX_11955001 0.48 ISO1-BL 215 chrX 12053589 12053714 FB 1 3 55 125 '29-26 67.61 12.3 4.1 intron,intron CR43960 +,Ten-a + chrX_55_12050001 chrX_12050001 0.53 ISO1-BL 216 chrX 12437331 12437458 hobo 1 2937 44 127 '22-22 66.52 11.5 3.5 intron Pkcdelta + chrX_44_12435001 chrX_12435001 0.50 ISO1-BL 217 chrX 12558614 12558708 roo 9041 8672 8 94 '2-6 64.48 18.3 0.4 intron CG43921 - chrX_8_12555001 chrX_12555001 0.25 ISO1-BL 218 chrX 13159549 13159599 Doc 4 54 27 50 '14-13 65.14 16.4 1.6 intergenic Bap60 -,CG12096 + chrX_27_13155001 chrX_13155001 0.52 ISO1-BL 219 chrX 13277377 13277460 FB 45 1 27 83 '10-17 66.70 13.6 1.8 intron HDAC4 - chrX_27_13275001 chrX_13275001 0.37 ISO1-BL 220 chrX 13718617 13718748 HMS-Beagle 6796 7040 55 131 '25-30 64.86 13.5 3.8 intergenic CG9941 -,CG9940 - chrX_55_13715001 chrX_13715001 0.45 ISO1-BL 221 chrX 14825729 14825843 Tirant 22 399 51 114 '20-31 64.96 5.0 8.5 intron rut - chrX_51_14825001 chrX_14825001 0.39 ISO1-BL 222 chrX 14989051 14989102 jockey 9 61 11 51 '8-3 64.54 24.3 0.4 intron eag + chrX_11_14985001 chrX_14985001 0.73 ISO1-BL 223 chrX 15405176 15405289 hobo 2924 2 23 113 '10-13 62.72 17.2 1.3 intron Cngl - chrX_23_15405001 chrX_15405001 0.43 ISO1-BL 224 chrX 15816784 15816938 hobo 2935 1 25 154 '8-17 65.39 10.5 2.2 intron sd + chrX_25_15815001 chrX_15815001 0.32 ISO1-BL 225 chrX 17502052 17502174 FB 4 3 41 122 '16-25 66.60 9.4 3.9 intron CG43658 - chrX_41_17500001 chrX_17500001 0.39 ISO1-BL 226 chrX 19018636 19018748 copia 14 250 38 112 '17-21 66.88 7.1 4.7 intron CG43759 + chrX_38_19015001 chrX_19015001 0.45 ISO1-BL 227 chrX 19097431 19097558 hobo 2938 1 57 127 '28-29 65.99 12.8 4.1 intergenic not near genes chrX_57_19095001 chrX_19095001 0.49 ISO1-BL 228 chrX 19745663 19745713 Max-element 311 261 17 50 '12-5 66.91 29.9 0.6 3` UTR,3` UTR CG33932 +,Rpp20 + chrX_17_19745001 chrX_19745001 0.71 ISO1-BL 229 chrX 19887437 19887637 HMS-Beagle 239 6844 11 200 '1-10 69.49 17.3 0.6 intron,exon Hers +,amn - chrX_11_19885001 chrX_19885001 0.09 ISO1-BL 230 chrX 20120342 20120468 roo 2 404 53 126 '22-31 67.34 11.8 4.1 intergenic not near genes chrX_53_20120001 chrX_20120001 0.42 ISO1-BL 231 chrX 20448392 20448511 I-element 5350 2 61 119 '21-40 64.74 11.3 5.0 intergenic not near genes chrX_61_20445001 chrX_20445001 0.34 ISO1-BL 232 chrY 311341 311461 1360 14 4 14 120 '13-1 59.21 15.0 0.9 intergenic not near genes chrY_14_310001 chrY_310001 0.93 ISO1-BL 233 chrY 536713 536742 Doc 31 2 34 29 '16-18 59.80 15.4 2.1 intron kl-3 + chrY_34_535001 chrY_535001 0.47 ISO1-BL 234 chrY 864864 864994 accord 1 7382 51 130 '25-26 65.64 135.0 0.4 intergenic not near genes chrY_51_860001 chrY_860001 0.49 ISO1-BL 235 chrY 2720330 2720381 Quasimodo 23 4 27 51 '20-7 72.45 10.3 2.4 intergenic not near genes chrY_27_2720001 chrY_2720001 0.74 ISO1-BL 236 chrY 2720331 2720407 invader6 4537 364 21 76 '7-14 67.59 7.7 2.4 intergenic not near genes chrY_21_2720001 chrY_2720001 0.33 ISO1-BL 237 chrY 2720343 2720400 1360 3253 3196 25 57 '14-11 66.51 9.5 2.4 intergenic not near genes chrY_25_2720001 chrY_2720001 0.56 ISO1-BL 238 chrY 2773004 2773099 1731 4584 4317 4 95 '3-1 75.00 31.7 0.1 intergenic not near genes chrY_4_2770001 chrY_2770001 0.75 ISO1-BL