SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 2100377 2100383 chr2L 2109549 2109559 roo 10 9174 34.5 28.5 31.5 0.3 9182 chr2L 2100377 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109559 intron dpr3 - chr2L_10_2100001 chr2L_2100001 ISO1-AS-Emb123 2 chr2L 2100384 2100384 chr2L 2109547 2109560 roo 5 9167 34.5 28.0 31.2 0.2 9176 chr2L 2100384 intron dpr3 - chr2L 2104972 intron dpr3 - chr2L 2109560 intron dpr3 - chr2L_5_2100001 chr2L_2100001 ISO1-AS-Emb123 3 chr2L 2100385 2100385 chr2L 2109533 2109561 roo 8 9166 34.0 22.0 28.0 0.3 9176 chr2L 2100385 intron dpr3 - chr2L 2104973 intron dpr3 - chr2L 2109561 intron dpr3 - chr2L_8_2100001 chr2L_2100001 ISO1-AS-Emb123 4 chr2L 2100386 2100407 chr2L 2109525 2109552 roo 18 9156 17.0 16.0 16.5 1.0 9166 chr2L 2100386 intron dpr3 - chr2L 2104969 intron dpr3 - chr2L 2109552 intron dpr3 - chr2L_18_2100001 chr2L_2100001 ISO1-AS-Emb123 5 chr2L 2427471 2427473 chr2L 20719042 20719044 8 18291571 83.0 78.5 80.8 0.1 18291573 chr2L 2427471 3` UTR CR44912 - chr2L 11573258 intergenic not near genes chr2L 20719044 intergenic not near genes chr2L_8_11570001 chr2L_11570001 ISO1-AS-Emb123 6 chr2L 2661178 2661188 chr2L 2663041 2663051 I-element 6 1863 38.0 24.5 31.2 0.2 1873 chr2L 2661178 intergenic not near genes chr2L 2662114 intergenic not near genes chr2L 2663051 intergenic not near genes chr2L_6_2660001 chr2L_2660001 ISO1-AS-Emb123 7 chr2L 2661189 2661231 chr2L 2663036 2663047 I-element 32 1855 21.0 22.5 21.8 1.4 1858 chr2L 2661189 intergenic not near genes chr2L 2662118 intergenic not near genes chr2L 2663047 intergenic not near genes chr2L_32_2660001 chr2L_2660001 ISO1-AS-Emb123 8 chr2L 3514737 3514737 chr2L 10242515 10242516 diver 42 6727779 86.0 89.5 87.8 0.5 6727779 chr2L 3514737 intergenic CG33123 -,CG17593 + chr2L 6878626 intron Nlg2 + chr2L 10242516 3` UTR chico - chr2L_42_6875001 chr2L_6875001 ISO1-AS-Emb123 9 chr2L 3996303 3996304 chr2L 4037126 4037126 6 40823 72.0 96.0 84.0 0.1 40823 chr2L 3996303 intergenic not near genes chr2L 4016714 intergenic not near genes chr2L 4037126 intron ed + chr2L_6_4015001 chr2L_4015001 ISO1-AS-Emb123 10 chr2L 5455927 5455928 chr2L 21367377 21367378 78 15911450 79.5 77.5 78.5 1.0 15911451 chr2L 5455927 intergenic not near genes chr2L 13411652 intergenic Vm34Ca - chr2L 21367378 intergenic dtr + chr2L_78_13410001 chr2L_13410001 ISO1-AS-Emb123 11 chr2L 6876755 6876778 chr2L 6882971 6882991 diver 20 6215 28.0 9.5 18.8 1.0 6236 chr2L 6876755 intron Nlg2 + chr2L 6879873 intron Nlg2 + chr2L 6882991 intron Nlg2 + chr2L_20_6875001 chr2L_6875001 ISO1-AS-Emb123 12 chr2L 6876779 6876810 chr2L 6882966 6883026 diver 43 6212 15.5 8.5 12.0 3.3 6247 chr2L 6876779 intron Nlg2 + chr2L 6879902 intron Nlg2 + chr2L 6883026 intron Nlg2 + chr2L_43_6875001 chr2L_6875001 ISO1-AS-Emb123 13 chr2L 7977059 7977067 chr2L 7984058 7984066 297 6 6998 33.5 20.5 27.0 0.2 7007 chr2L 7977059 intron Snoo - chr2L 7980562 intron Snoo - chr2L 7984066 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 ISO1-AS-Emb123 14 chr2L 7977068 7977098 chr2L 7984054 7984097 297 21 6998 21.0 17.5 19.2 1.0 7029 chr2L 7977068 intron Snoo - chr2L 7980582 intron Snoo - chr2L 7984097 intron,5` UTR Snoo -,CG7231 + chr2L_21_7980001 chr2L_7980001 ISO1-AS-Emb123 15 chr2L 7977102 7977104 chr2L 7984053 7984103 297 7 6992 20.5 17.0 18.8 0.4 7001 chr2L 7977102 intron Snoo - chr2L 7980602 intron Snoo - chr2L 7984103 intron,5` UTR Snoo -,CG7231 + chr2L_7_7980001 chr2L_7980001 ISO1-AS-Emb123 16 chr2L 7977105 7977108 chr2L 7984052 7984108 297 8 6992 18.5 17.0 17.8 0.4 7003 chr2L 7977105 intron Snoo - chr2L 7980606 intron Snoo - chr2L 7984108 intron,5` UTR Snoo -,CG7231 + chr2L_8_7980001 chr2L_7980001 ISO1-AS-Emb123 17 chr2L 8034583 8034593 chr2L 8034716 8034730 5 143 22.0 30.0 26.0 0.2 147 chr2L 8034583 intron,intron CG7367 -,Cka + chr2L 8034656 intron,intron CG7367 -,Cka + chr2L 8034730 intron,intron CG7367 -,Cka + chr2L_5_8030001 chr2L_8030001 ISO1-AS-Emb123 18 chr2L 8088011 8088068 chr2L 8118659 8118716 62 30648 118.5 105.0 111.8 0.5 30705 chr2L 8088011 intron Bsg + chr2L 8103364 intron Bsg + chr2L 8118716 exon mon2 - chr2L_62_8100001 chr2L_8100001 ISO1-AS-Emb123 19 chr2L 8578452 8578452 chr2L 16071771 16071771 4 7493319 65.5 60.5 63.0 0.1 7493319 chr2L 8578452 intron Sema-1a + chr2L 12325112 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_12325001 chr2L_12325001 ISO1-AS-Emb123 20 chr2L 8723091 8723144 chr2L 8731493 8731546 Tirant 67 8402 19.5 15.0 17.2 3.7 8455 chr2L 8723091 intron raw - chr2L 8727318 intron raw - chr2L 8731546 intron raw - chr2L_67_8725001 chr2L_8725001 ISO1-AS-Emb123 21 chr2L 8894666 8894666 chr2L 10335354 10335358 14 1440689 100.5 89.5 95.0 0.1 1440692 chr2L 8894666 intergenic not near genes chr2L 9615012 intron Trx-2 + chr2L 10335358 intron GATAd + chr2L_14_9615001 chr2L_9615001 ISO1-AS-Emb123 22 chr2L 8894666 8894666 chr2L 17158908 17158908 11 8264242 100.5 72.5 86.5 0.1 8264242 chr2L 8894666 intergenic not near genes chr2L 13026787 intron CG9932 - chr2L 17158908 intron,intron CG34106 +,beat-IIIa + chr2L_11_13025001 chr2L_13025001 ISO1-AS-Emb123 23 chr2L 8894667 8894667 chr2L 17158908 17158908 11 8264241 101.0 72.5 86.8 0.1 8264241 chr2L 8894667 intergenic not near genes chr2L 13026788 intron CG9932 - chr2L 17158908 intron,intron CG34106 +,beat-IIIa + chr2L_11_13025001 chr2L_13025001 ISO1-AS-Emb123 24 chr2L 9084336 9084337 chr2L 16217660 16217660 4 7133323 77.0 72.0 74.5 0.1 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 ISO1-AS-Emb123 25 chr2L 9084338 9084340 chr2L 16217660 16217660 30 7133321 80.0 72.0 76.0 0.4 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_30_12650001 chr2L_12650001 ISO1-AS-Emb123 26 chr2L 9723026 9723026 chr2L 22522656 22522657 6 12799631 34.0 79.0 56.5 0.1 12799631 chr2L 9723026 intron Nckx30C - chr2L 16122842 intergenic not near genes chr2L 22522657 intergenic not near genes chr2L_6_16120001 chr2L_16120001 ISO1-AS-Emb123 27 chr2L 2251577 2251577 chr2L 10168588 10168592 4 7917013 72.5 50.5 61.5 0.1 7917015 chr2L 2251577 3` UTR CG17239 - chr2L 6210084 3` UTR CG34380 + chr2L 10168592 intron CG44153 - chr2L_4_6210001 chr2L_6210001 ISO1-AS-Emb123 28 chr2L 10176023 10176024 chr2L 16071771 16071771 9 5895747 76.0 60.5 68.2 0.1 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_9_13120001 chr2L_13120001 ISO1-AS-Emb123 29 chr2L 8894666 8894666 chr2L 10335354 10335354 16 1440688 100.5 89.5 95.0 0.2 1440688 chr2L 8894666 intergenic not near genes chr2L 9615010 intron Trx-2 + chr2L 10335354 intron GATAd + chr2L_16_9615001 chr2L_9615001 ISO1-AS-Emb123 30 chr2L 10335357 10335357 chr2L 17158908 17158908 6 6823551 66.5 72.5 69.5 0.1 6823551 chr2L 10335357 intron GATAd + chr2L 13747132 intron,intron CR44846 +,TM9SF4 + chr2L 17158908 intron,intron CG34106 +,beat-IIIa + chr2L_6_13745001 chr2L_13745001 ISO1-AS-Emb123 31 chr2L 8894666 8894666 chr2L 10335358 10335359 25 1440692 100.5 87.0 93.8 0.3 1440693 chr2L 8894666 intergenic not near genes chr2L 9615012 intron Trx-2 + chr2L 10335359 intron GATAd + chr2L_25_9615001 chr2L_9615001 ISO1-AS-Emb123 32 chr2L 10679855 10679890 chr2L 10679961 10679990 36 105 21.5 27.5 24.5 1.4 135 chr2L 10679855 intergenic CG17104 +,CR44180 - chr2L 10679922 intergenic CG17104 +,CR44180 - chr2L 10679990 intergenic CR44180 -,CG17104 + chr2L_36_10675001 chr2L_10675001 ISO1-AS-Emb123 33 chr2L 12373085 12373085 chr2L 15974279 15974280 8 3601194 74.0 88.5 81.2 0.1 3601195 chr2L 12373085 intron bru-2 + chr2L 14173682 intron CG43333 - chr2L 15974280 intergenic not near genes chr2L_8_14170001 chr2L_14170001 ISO1-AS-Emb123 34 chr2L 12766066 12766067 chr2L 13556838 13556838 5 790772 64.5 90.5 77.5 0.1 790772 chr2L 12766066 intergenic not near genes chr2L 13161452 exon CG5204 + chr2L 13556838 intron kuz + chr2L_5_13160001 chr2L_13160001 ISO1-AS-Emb123 35 chr2L 12861671 12861682 chr2L 12863163 12863174 hobo 16 1491 53.0 22.0 37.5 0.4 1503 chr2L 12861671 intergenic not near genes chr2L 12862422 intergenic not near genes chr2L 12863174 intergenic not near genes chr2L_16_12860001 chr2L_12860001 ISO1-AS-Emb123 36 chr2L 12861683 12861728 chr2L 12863161 12863220 hobo 66 1491 21.5 21.5 21.5 2.9 1537 chr2L 12861683 intergenic not near genes chr2L 12862452 intergenic not near genes chr2L 12863220 intergenic not near genes chr2L_66_12860001 chr2L_12860001 ISO1-AS-Emb123 37 chr2L 12894005 12894051 chr2L 12895488 12895543 hobo 30 1491 11.0 16.0 13.5 2.1 1538 chr2L 12894005 intergenic not near genes chr2L 12894774 intergenic not near genes chr2L 12895543 intergenic not near genes chr2L_30_12890001 chr2L_12890001 ISO1-AS-Emb123 38 chr2L 13973443 13973444 chr2L 15374932 15374932 7 1401488 74.5 65.5 70.0 0.1 1401489 chr2L 13973443 3` UTR NimC1 - chr2L 14674188 intron osp - chr2L 15374932 intergenic not near genes chr2L_7_14670001 chr2L_14670001 ISO1-AS-Emb123 39 chr2L 15445526 15445527 chr2L 15508722 15508723 5 63195 76.0 80.0 78.0 0.1 63197 chr2L 15445526 intergenic not near genes chr2L 15477124 exon sna - chr2L 15508723 intergenic not near genes chr2L_5_15475001 chr2L_15475001 ISO1-AS-Emb123 40 chr2L 15490094 15490095 chr2L 15950935 15950935 Quasimodo 6 460840 88.0 71.5 79.8 0.1 460841 chr2L 15490094 intergenic not near genes chr2L 15720514 intergenic not near genes chr2L 15950935 intron beat-Ib - chr2L_6_15720001 chr2L_15720001 ISO1-AS-Emb123 41 chr2L 3839097 3839099 chr2L 15768631 15768632 6 11929533 76.0 68.5 72.2 0.1 11929535 chr2L 3839097 3` UTR slp2 + chr2L 9803864 intron nAChRalpha6 - chr2L 15768632 3` UTR Ku80 - chr2L_6_9800001 chr2L_9800001 ISO1-AS-Emb123 42 chr2L 15950935 15950935 chr2L 16381946 16381947 4 431012 74.5 81.0 77.8 0.1 431012 chr2L 15950935 intron beat-Ib - chr2L 16166441 5` UTR Ca-alpha1D + chr2L 16381947 intergenic not near genes chr2L_4_16165001 chr2L_16165001 ISO1-AS-Emb123 43 chr2L 15956000 15956056 chr2L 15957492 15957524 hobo 60 1491 17.5 29.5 23.5 2.4 1524 chr2L 15956000 intron beat-Ib - chr2L 15956762 intron beat-Ib - chr2L 15957524 intron beat-Ib - chr2L_60_15955001 chr2L_15955001 ISO1-AS-Emb123 44 chr2L 10176024 10176024 chr2L 16071771 16071771 5 5895747 76.0 60.5 68.2 0.1 5895747 chr2L 10176024 intron CG44153 - chr2L 13123898 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_5_13120001 chr2L_13120001 ISO1-AS-Emb123 45 chr2L 10522357 10522358 chr2L 16071771 16071771 5 5549413 72.5 60.5 66.5 0.1 5549414 chr2L 10522357 intergenic not near genes chr2L 13297064 intron CG31729 + chr2L 16071771 intron beat-Ia + chr2L_5_13295001 chr2L_13295001 ISO1-AS-Emb123 46 chr2L 16071771 16071771 chr2L 16217659 16217660 copia 50 145889 59.5 72.0 65.8 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_50_16140001 chr2L_16140001 ISO1-AS-Emb123 47 chr2L 9084336 9084340 chr2L 16217660 16217660 30 7133321 80.0 72.0 76.0 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_30_12650001 chr2L_12650001 ISO1-AS-Emb123 48 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 59 145889 59.5 72.0 65.8 0.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_59_16140001 chr2L_16140001 ISO1-AS-Emb123 49 chr2L 16217660 16217660 chr2L 18622718 18622719 6 2405059 75.0 60.5 67.8 0.1 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 ISO1-AS-Emb123 50 chr2L 15950933 15950935 chr2L 16381946 16381947 4 431012 74.5 81.0 77.8 0.1 431014 chr2L 15950933 intron beat-Ib - chr2L 16166440 5` UTR Ca-alpha1D + chr2L 16381947 intergenic not near genes chr2L_4_16165001 chr2L_16165001 ISO1-AS-Emb123 51 chr2L 2251577 2251577 chr2L 17097165 17097168 4 14845590 72.5 79.5 76.0 0.1 14845591 chr2L 2251577 3` UTR CG17239 - chr2L 9674372 intergenic not near genes chr2L 17097168 intergenic not near genes chr2L_4_9670001 chr2L_9670001 ISO1-AS-Emb123 52 chr2L 12413171 12413178 chr2L 17097168 17097169 4 4683996 74.0 80.5 77.2 0.1 4683998 chr2L 12413171 intron vir-1 - chr2L 14755170 intergenic not near genes chr2L 17097169 intergenic not near genes chr2L_4_14755001 chr2L_14755001 ISO1-AS-Emb123 53 chr2L 8894666 8894666 chr2L 17158907 17158907 4 8264241 100.5 72.5 86.5 0.0 8264241 chr2L 8894666 intergenic not near genes chr2L 13026786 intron CG9932 - chr2L 17158907 intron,intron CG34106 +,beat-IIIa + chr2L_4_13025001 chr2L_13025001 ISO1-AS-Emb123 54 chr2L 8894666 8894667 chr2L 17158908 17158908 15 8264242 101.0 72.5 86.8 0.2 8264242 chr2L 8894666 intergenic not near genes chr2L 13026787 intron CG9932 - chr2L 17158908 intron,intron CG34106 +,beat-IIIa + chr2L_15_13025001 chr2L_13025001 ISO1-AS-Emb123 55 chr2L 10335354 10335357 chr2L 17158908 17158908 4 6823552 66.5 72.5 69.5 0.1 6823554 chr2L 10335354 intron GATAd + chr2L 13747131 intron,intron CR44846 +,TM9SF4 + chr2L 17158908 intron,intron CG34106 +,beat-IIIa + chr2L_4_13745001 chr2L_13745001 ISO1-AS-Emb123 56 chr2L 17199139 17199186 chr2L 17200631 17200678 hobo 52 1491 14.5 19.5 17.0 2.9 1539 chr2L 17199139 intron beat-IIIc - chr2L 17199908 intron beat-IIIc - chr2L 17200678 intron beat-IIIc - chr2L_52_17195001 chr2L_17195001 ISO1-AS-Emb123 57 chr2L 17687493 17687523 chr2L 17692263 17692283 F-element 30 4770 11.0 16.0 13.5 2.1 4790 chr2L 17687493 intron CadN - chr2L 17689888 intron CadN - chr2L 17692283 intron CadN - chr2L_30_17685001 chr2L_17685001 ISO1-AS-Emb123 58 chr2L 17727843 17727879 chr2L 17729335 17729346 hobo 46 1490 16.5 32.0 24.2 1.8 1503 chr2L 17727843 intron CadN - chr2L 17728594 intron CadN - chr2L 17729346 intron CadN - chr2L_46_17725001 chr2L_17725001 ISO1-AS-Emb123 59 chr2L 17951923 17951977 chr2L 17953415 17953469 hobo 49 1492 19.0 19.5 19.2 2.4 1546 chr2L 17951923 intergenic CR44398 -,CR44397 - chr2L 17952696 intergenic not near genes chr2L 17953469 intergenic not near genes chr2L_49_17950001 chr2L_17950001 ISO1-AS-Emb123 60 chr2L 17988362 17988417 chr2L 17991935 17991990 112 3574 178.0 173.0 175.5 0.6 3628 chr2L 17988362 3` UTR CG5681 + chr2L 17990176 intergenic Prosbeta5R2 + chr2L 17991990 intergenic Prosbeta5R2 + chr2L_112_17990001 chr2L_17990001 ISO1-AS-Emb123 61 chr2L 18078689 18078690 chr2L 19486507 19486508 24 1407818 76.0 97.0 86.5 0.3 1407819 chr2L 18078689 intron Arr1 + chr2L 18782598 intron ham - chr2L 19486508 3` UTR CG13084 + chr2L_24_18780001 chr2L_18780001 ISO1-AS-Emb123 62 chr2L 18496094 18496096 chr2L 21367377 21367379 4 2871283 94.5 77.5 86.0 0.0 2871285 chr2L 18496094 intron kon - chr2L 19931736 intron sick + chr2L 21367379 intergenic dtr + chr2L_4_19930001 chr2L_19930001 ISO1-AS-Emb123 63 chr2L 16217660 16217660 chr2L 18622718 18622719 11 2405058 75.0 60.5 67.8 0.2 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_11_17420001 chr2L_17420001 ISO1-AS-Emb123 64 chr2L 18918676 18918732 chr2L 18918850 18918906 26 174 47.5 44.0 45.8 0.6 230 chr2L 18918676 intron ssp3 - chr2L 18918791 intron ssp3 - chr2L 18918906 intron ssp3 - chr2L_26_18915001 chr2L_18915001 ISO1-AS-Emb123 65 chr2L 19024096 19024097 chr2L 21768291 21768291 10 2744195 78.5 85.5 82.0 0.1 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_10_20395001 chr2L_20395001 ISO1-AS-Emb123 66 chr2L 20101931 20101985 chr2L 20102034 20102088 41 101 19.0 26.0 22.5 1.7 157 chr2L 20101931 exon Kua + chr2L 20102010 exon Kua + chr2L 20102088 exon Kua + chr2L_41_20100001 chr2L_20100001 ISO1-AS-Emb123 67 chr2L 15950935 15950935 chr2L 22039832 22039832 6 6088897 74.5 83.0 78.8 0.1 6088897 chr2L 15950935 intron beat-Ib - chr2L 18995384 intron CG10650 - chr2L 22039832 intergenic CG41434 + chr2L_6_18995001 chr2L_18995001 ISO1-AS-Emb123 68 chr2L 17158908 17158908 chr2L 23369601 23369601 5 6210693 68.5 139.0 103.8 0.0 6210693 chr2L 17158908 intron,intron CG34106 +,beat-IIIa + chr2L 20264254 exon CG17570 - chr2L 23369601 intergenic not near genes chr2L_5_20260001 chr2L_20260001 ISO1-AS-Emb123 69 chr2R 676141 676141 chr2R 4122844 4122844 17.6 4 3446703 47.5 79.5 63.5 0.1 3446703 chr2R 676141 intron CG43676 + chr2R 2399492 intergenic not near genes chr2R 4122844 intergenic not near genes chr2R_4_2395001 chr2R_2395001 ISO1-AS-Emb123 70 chr2R 1320204 1320204 chr2R 21358403 21358403 8 20038199 79.5 89.0 84.2 0.1 20038199 chr2R 1320204 intergenic not near genes chr2R 11339304 exon zetaTry - chr2R 21358403 intron cv-2 - chr2R_8_11335001 chr2R_11335001 ISO1-AS-Emb123 71 chr2R 1340066 1340083 chr2R 1340140 1340144 20 109 90.0 92.5 91.2 0.2 78 chr2R 1340066 intergenic not near genes chr2R 1340105 intergenic not near genes chr2R 1340144 intergenic not near genes chr2R_20_1340001 chr2R_1340001 ISO1-AS-Emb123 72 chr2R 1340587 1340591 chr2R 1340872 1340880 6 288 89.0 93.0 91.0 0.1 293 chr2R 1340587 intergenic not near genes chr2R 1340734 intergenic not near genes chr2R 1340880 intergenic not near genes chr2R_6_1340001 chr2R_1340001 ISO1-AS-Emb123 73 chr2R 1516581 1516603 chr2R 1521334 1521356 1731 41 4752 131.5 96.5 114.0 0.4 4775 chr2R 1516581 exon Maf1 - chr2R 1518968 intron Maf1 - chr2R 1521356 5` UTR Maf1 - chr2R_41_1515001 chr2R_1515001 ISO1-AS-Emb123 74 chr2R 1761309 1761316 chr2R 1761439 1761446 5 130 88.0 77.0 82.5 0.1 137 chr2R 1761309 intron CG41520 + chr2R 1761378 intron CG41520 + chr2R 1761446 intron CG41520 + chr2R_5_1760001 chr2R_1760001 ISO1-AS-Emb123 75 chr2R 1873410 1873421 chr2R 2880021 2880032 17.6 8 1006611 68.0 10.5 39.2 0.2 1006622 chr2R 1873410 intron CG17684 - chr2R 2376721 intergenic not near genes chr2R 2880032 intergenic not near genes chr2R_8_2375001 chr2R_2375001 ISO1-AS-Emb123 76 chr2R 2613064 2613110 chr2R 2617440 2617494 Max-element 4 4378 89.5 68.5 79.0 0.1 4430 chr2R 2613064 intergenic not near genes chr2R 2615279 intergenic not near genes chr2R 2617494 intergenic not near genes chr2R_4_2615001 chr2R_2615001 ISO1-AS-Emb123 77 chr2R 3144066 3144110 chr2R 3393363 3393409 Doc 27 249302 99.5 90.0 94.8 0.3 249343 chr2R 3144066 intron CG42596 + chr2R 3268738 intergenic not near genes chr2R 3393409 intergenic not near genes chr2R_27_3265001 chr2R_3265001 ISO1-AS-Emb123 78 chr2R 3293717 3293749 chr2R 3293820 3293852 37 102 28.5 7.0 17.8 2.0 135 chr2R 3293717 intergenic not near genes chr2R 3293784 intergenic not near genes chr2R 3293852 intergenic not near genes chr2R_37_3290001 chr2R_3290001 ISO1-AS-Emb123 79 chr2R 473354 473369 chr2R 4150693 4150708 14 3677339 77.5 82.5 80.0 0.2 3677354 chr2R 473354 intergenic not near genes chr2R 2312031 intergenic not near genes chr2R 4150708 intergenic not near genes chr2R_14_2310001 chr2R_2310001 ISO1-AS-Emb123 80 chr2R 4825123 4825123 chr2R 22311215 22311216 6 17486092 63.0 81.0 72.0 0.1 17486093 chr2R 4825123 intergenic not near genes chr2R 13568170 intergenic not near genes chr2R 22311216 intron wdp - chr2R_6_13565001 chr2R_13565001 ISO1-AS-Emb123 81 chr2R 5663396 5663396 chr2R 9769503 9769503 6 4106107 82.5 73.0 77.8 0.1 4106107 chr2R 5663396 intergenic Not3 - chr2R 7716450 exon CG1946 + chr2R 9769503 intron CG1688 - chr2R_6_7715001 chr2R_7715001 ISO1-AS-Emb123 82 chr2R 5663396 5663396 chr2R 24383835 24383835 6 18720439 82.5 60.5 71.5 0.1 18720439 chr2R 5663396 intergenic Not3 - chr2R 15023616 intron hbs + chr2R 24383835 intron mAChR-A - chr2R_6_15020001 chr2R_15020001 ISO1-AS-Emb123 83 chr2R 5663397 5663397 chr2R 9769503 9769503 4 4106106 83.5 73.0 78.2 0.1 4106106 chr2R 5663397 intergenic Not3 - chr2R 7716450 exon CG1946 + chr2R 9769503 intron CG1688 - chr2R_4_7715001 chr2R_7715001 ISO1-AS-Emb123 84 chr2R 5663397 5663397 chr2R 24383835 24383835 6 18720438 83.5 60.5 72.0 0.1 18720438 chr2R 5663397 intergenic Not3 - chr2R 15023616 intron hbs + chr2R 24383835 intron mAChR-A - chr2R_6_15020001 chr2R_15020001 ISO1-AS-Emb123 85 chr2R 4754095 4754095 chr2R 6151591 6151591 4 1397496 88.0 100.0 94.0 0.0 1397496 chr2R 4754095 intron conu + chr2R 5452843 intron laccase2 + chr2R 6151591 intron EcR - chr2R_4_5450001 chr2R_5450001 ISO1-AS-Emb123 86 chr2R 6236561 6236561 chr2R 14646228 14646228 4 8409667 82.0 80.5 81.2 0.0 8409667 chr2R 6236561 intron bin3 + chr2R 10441394 intron Galphao + chr2R 14646228 3` UTR CG10139 + chr2R_4_10440001 chr2R_10440001 ISO1-AS-Emb123 87 chr2R 5064834 5064835 chr2R 6629974 6629974 4 1565140 66.0 87.0 76.5 0.1 1565140 chr2R 5064834 intergenic TpnC41C - chr2R 5847404 exon dpr12 + chr2R 6629974 intron Vha16-1 - chr2R_4_5845001 chr2R_5845001 ISO1-AS-Emb123 88 chr2R 7209845 7209871 chr2R 7217618 7217644 roo 21 7773 20.0 34.0 27.0 0.8 7799 chr2R 7209845 intron pk + chr2R 7213744 intron pk + chr2R 7217644 intron pk + chr2R_21_7210001 chr2R_7210001 ISO1-AS-Emb123 89 chr2R 7608386 7608431 chr2R 7613614 7613659 I-element 55 5227 23.5 24.0 23.8 2.2 5273 chr2R 7608386 intron CG1358 - chr2R 7611022 intron CG1358 - chr2R 7613659 intron CG1358 - chr2R_55_7610001 chr2R_7610001 ISO1-AS-Emb123 90 chr2R 7869162 7869212 chr2R 7873973 7874023 Doc 40 4809 20.5 27.5 24.0 1.6 4861 chr2R 7869162 intron Dgk - chr2R 7871592 intron Dgk - chr2R 7874023 intron Dgk - chr2R_40_7870001 chr2R_7870001 ISO1-AS-Emb123 91 chr2R 8398185 8398240 chr2R 8402991 8403046 Doc 48 4805 20.0 14.5 17.2 2.6 4861 chr2R 8398185 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403046 intron CG2121 - chr2R_48_8400001 chr2R_8400001 ISO1-AS-Emb123 92 chr2R 9493557 9493558 chr2R 11426885 11426886 4 1933328 78.5 90.0 84.2 0.0 1933329 chr2R 9493557 intergenic not near genes chr2R 10460222 intron Galphao + chr2R 11426886 intron Drip - chr2R_4_10460001 chr2R_10460001 ISO1-AS-Emb123 93 chr2R 10585573 10585586 chr2R 10594168 10594194 Tirant 16 8606 13.5 41.5 27.5 0.6 8621 chr2R 10585573 intron psq + chr2R 10589884 intron psq + chr2R 10594194 intron psq + chr2R_16_10585001 chr2R_10585001 ISO1-AS-Emb123 94 chr2R 578787 578788 chr2R 10740791 10740792 4 10162004 89.0 68.5 78.8 0.1 10162005 chr2R 578787 intron CG40378 + chr2R 5659790 intron Not3 - chr2R 10740792 3` UTR CG33144 - chr2R_4_5655001 chr2R_5655001 ISO1-AS-Emb123 95 chr2R 1320198 1320201 chr2R 11463556 11463556 invader1 5 10143356 77.0 90.5 83.8 0.1 10143358 chr2R 1320198 intergenic not near genes chr2R 6391877 intergenic not near genes chr2R 11463556 3` UTR E(Pc) + chr2R_5_6390001 chr2R_6390001 ISO1-AS-Emb123 96 chr2R 11463556 11463556 chr2R 19105594 19105594 8 7642038 89.5 47.0 68.2 0.1 7642038 chr2R 11463556 3` UTR E(Pc) + chr2R 15284575 intron Trpm - chr2R 19105594 intron 5-HT1A + chr2R_8_15280001 chr2R_15280001 ISO1-AS-Emb123 97 chr2R 12221896 12221926 chr2R 12222015 12222045 5 119 71.5 68.0 69.8 0.1 149 chr2R 12221896 intergenic not near genes chr2R 12221970 intergenic not near genes chr2R 12222045 intergenic not near genes chr2R_5_12220001 chr2R_12220001 ISO1-AS-Emb123 98 chr2R 578786 578788 chr2R 12753197 12753197 6 12174410 89.0 81.0 85.0 0.1 12174411 chr2R 578786 intron CG40378 + chr2R 6665992 intron Adf1 + chr2R 12753197 3` UTR Taz - chr2R_6_6665001 chr2R_6665001 ISO1-AS-Emb123 99 chr2R 13136819 13136823 chr2R 13141642 13141646 Doc 9 4823 37.0 23.0 30.0 0.3 4827 chr2R 13136819 exon Cap-G + chr2R 13139232 intron Cap-G + chr2R 13141646 intron Cap-G + chr2R_9_13135001 chr2R_13135001 ISO1-AS-Emb123 100 chr2R 13136825 13136866 chr2R 13141639 13141688 Doc 31 4822 15.5 20.0 17.8 1.6 4863 chr2R 13136825 exon Cap-G + chr2R 13139256 intron Cap-G + chr2R 13141688 intron Cap-G + chr2R_31_13135001 chr2R_13135001 ISO1-AS-Emb123 101 chr2R 14394209 14394235 chr2R 14399023 14399030 Doc 19 4812 33.0 18.5 25.8 0.7 4821 chr2R 14394209 intergenic not near genes chr2R 14396620 intergenic not near genes chr2R 14399030 intergenic not near genes chr2R_19_14395001 chr2R_14395001 ISO1-AS-Emb123 102 chr2R 14646228 14646228 chr2R 14728790 14728790 4 82562 82.0 30.0 56.0 0.1 82562 chr2R 14646228 3` UTR CG10139 + chr2R 14687509 intron mspo - chr2R 14728790 intergenic not near genes chr2R_4_14685001 chr2R_14685001 ISO1-AS-Emb123 103 chr2R 15119291 15119346 chr2R 15127797 15127852 Tirant 42 8504 19.5 13.5 16.5 2.4 8561 chr2R 15119291 intron chn + chr2R 15123572 intron chn + chr2R 15127852 intron chn + chr2R_42_15120001 chr2R_15120001 ISO1-AS-Emb123 104 chr2R 5663397 5663398 chr2R 15330152 15330152 4 9666755 84.0 72.5 78.2 0.1 9666755 chr2R 5663397 intergenic Not3 - chr2R 10496774 intron lola - chr2R 15330152 intergenic CR44371 - chr2R_4_10495001 chr2R_10495001 ISO1-AS-Emb123 105 chr2R 14316458 14316458 chr2R 15918602 15918602 4 1602144 76.0 89.0 82.5 0.0 1602144 chr2R 14316458 intron Shroom + chr2R 15117530 intron chn + chr2R 15918602 intron sli - chr2R_4_15115001 chr2R_15115001 ISO1-AS-Emb123 106 chr2R 16252760 16252774 chr2R 24298519 24298519 4 8045753 88.5 73.5 81.0 0.0 8045759 chr2R 16252760 intron CngA - chr2R 20275640 exon CG11788 + chr2R 24298519 intergenic CG3394 + chr2R_4_20275001 chr2R_20275001 ISO1-AS-Emb123 107 chr2R 17798405 17798415 chr2R 17798902 17798906 297 5 497 27.5 25.0 26.2 0.2 501 chr2R 17798405 intron Dhit + chr2R 17798656 intron Dhit + chr2R 17798906 intron Dhit + chr2R_5_17795001 chr2R_17795001 ISO1-AS-Emb123 108 chr2R 16383109 16383111 chr2R 18603043 18603045 126 2219934 81.5 73.0 77.2 1.6 2219936 chr2R 16383109 3` UTR CG43187 + chr2R 17493077 3` UTR NT5E-2 + chr2R 18603045 intron GEFmeso - chr2R_126_17490001 chr2R_17490001 ISO1-AS-Emb123 109 chr2R 12141777 12141791 chr2R 19128921 19128921 4 6987138 67.5 82.0 74.8 0.1 6987144 chr2R 12141777 exon CG8378 + chr2R 15635349 intron CG42524 + chr2R 19128921 intron CG15117 - chr2R_4_15635001 chr2R_15635001 ISO1-AS-Emb123 110 chr2R 15918602 15918602 chr2R 20974272 20974272 4 5055670 87.0 83.5 85.2 0.0 5055670 chr2R 15918602 intron sli - chr2R 18446437 intergenic CG30120 +,CG5189 + chr2R 20974272 intergenic CG15649 - chr2R_4_18445001 chr2R_18445001 ISO1-AS-Emb123 111 chr2R 4825123 4825123 chr2R 22311212 22311219 11 17486092 63.0 80.5 71.8 0.2 17486096 chr2R 4825123 intergenic not near genes chr2R 13568171 intergenic not near genes chr2R 22311219 intron wdp - chr2R_11_13565001 chr2R_13565001 ISO1-AS-Emb123 112 chr2R 24753366 24753400 chr2R 24758480 24758519 4 5115 70.0 57.5 63.8 0.1 5153 chr2R 24753366 exon CG30421 + chr2R 24755942 exon CG30421 + chr2R 24758519 exon spz6 + chr2R_4_24755001 chr2R_24755001 ISO1-AS-Emb123 113 chr2R 24942860 24942906 chr2R 24944247 24944254 11 1374 75.5 87.5 81.5 0.1 1394 chr2R 24942860 intergenic Tina-1 - chr2R 24943557 3` UTR CG15861 - chr2R 24944254 exon CG15861 - chr2R_11_24940001 chr2R_24940001 ISO1-AS-Emb123 114 chr3L 93849 93856 chr3L 21448026 21448026 6 21354175 74.5 78.0 76.2 0.1 21354177 chr3L 93849 intergenic not near genes chr3L 10770938 intergenic not near genes chr3L 21448026 3` UTR Syx7 + chr3L_6_10770001 chr3L_10770001 ISO1-AS-Emb123 115 chr3L 1154107 1154161 chr3L 1163282 1163322 roo 60 9174 23.0 24.0 23.5 2.4 9215 chr3L 1154107 intron bab2 - chr3L 1158714 intron bab2 - chr3L 1163322 intron bab2 - chr3L_60_1155001 chr3L_1155001 ISO1-AS-Emb123 116 chr3L 2344041 2344096 chr3L 2344773 2344828 45 733 93.5 112.5 103.0 0.4 787 chr3L 2344041 exon MsR1 + chr3L 2344434 3` UTR MsR1 + chr3L 2344828 3` UTR MsR1 + chr3L_45_2340001 chr3L_2340001 ISO1-AS-Emb123 117 chr3L 2927814 2927850 chr3L 2936116 2936152 Tirant 36 8302 31.0 18.0 24.5 1.4 8338 chr3L 2927814 intron Shab + chr3L 2931983 intron Shab + chr3L 2936152 intron Shab + chr3L_36_2930001 chr3L_2930001 ISO1-AS-Emb123 118 chr3L 2927852 2927871 chr3L 2936114 2936173 Tirant 33 8300 15.0 17.0 16.0 1.9 8321 chr3L 2927852 intron Shab + chr3L 2932012 intron Shab + chr3L 2936173 intron Shab + chr3L_33_2930001 chr3L_2930001 ISO1-AS-Emb123 119 chr3L 3281420 3281432 chr3L 3281941 3281953 Doc 9 521 43.5 15.0 29.2 0.3 533 chr3L 3281420 intron CG12017 + chr3L 3281686 intron CG12017 + chr3L 3281953 intron CG12017 + chr3L_9_3280001 chr3L_3280001 ISO1-AS-Emb123 120 chr3L 3281433 3281471 chr3L 3281938 3281973 Doc 41 517 19.0 14.0 16.5 2.3 540 chr3L 3281433 intron CG12017 + chr3L 3281703 intron CG12017 + chr3L 3281973 intron CG12017 + chr3L_41_3280001 chr3L_3280001 ISO1-AS-Emb123 121 chr3L 3368224 3368224 chr3L 20525228 20525230 7 17157005 83.5 84.5 84.0 0.1 17157006 chr3L 3368224 intergenic kst + chr3L 11946727 intergenic not near genes chr3L 20525230 intron CG4825 - chr3L_7_11945001 chr3L_11945001 ISO1-AS-Emb123 122 chr3L 3527808 3527808 chr3L 22160529 22160530 4 18632722 89.0 88.5 88.8 0.0 18632722 chr3L 3527808 intron Eip63E + chr3L 12844169 intergenic CG10948 - chr3L 22160530 intron olf413 + chr3L_4_12840001 chr3L_12840001 ISO1-AS-Emb123 123 chr3L 4341330 4341335 chr3L 21448026 21448026 59 17106694 81.5 78.0 79.8 0.7 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_59_12890001 chr3L_12890001 ISO1-AS-Emb123 124 chr3L 5104457 5104511 chr3L 5124616 5124670 61 20159 15.0 20.0 17.5 3.3 20213 chr3L 5104457 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124670 intergenic not near genes chr3L_61_5110001 chr3L_5110001 ISO1-AS-Emb123 125 chr3L 5555247 5555247 chr3L 18068872 18068872 6 12513625 76.5 32.5 54.5 0.1 12513625 chr3L 5555247 intergenic not near genes chr3L 11812060 exon CG42255 - chr3L 18068872 intron CG44006 - chr3L_6_11810001 chr3L_11810001 ISO1-AS-Emb123 126 chr3L 5555248 5555248 chr3L 18068872 18068872 5 12513624 77.5 32.5 55.0 0.1 12513624 chr3L 5555248 intergenic not near genes chr3L 11812060 exon CG42255 - chr3L 18068872 intron CG44006 - chr3L_5_11810001 chr3L_11810001 ISO1-AS-Emb123 127 chr3L 5770755 5770756 chr3L 15253229 15253229 6 9482474 80.5 82.5 81.5 0.1 9482474 chr3L 5770755 intron scny + chr3L 10511992 intron A2bp1 + chr3L 15253229 intergenic not near genes chr3L_6_10510001 chr3L_10510001 ISO1-AS-Emb123 128 chr3L 6296711 6296711 chr3L 15416952 15416953 4 9120241 81.0 72.5 76.8 0.1 9120242 chr3L 6296711 intergenic not near genes chr3L 10856832 intergenic not near genes chr3L 15416953 intergenic not near genes chr3L_4_10855001 chr3L_10855001 ISO1-AS-Emb123 129 chr3L 6499634 6499634 chr3L 10562795 10562795 4 4063161 78.5 69.0 73.8 0.1 4063161 chr3L 6499634 intron sfl + chr3L 8531214 intron foi + chr3L 10562795 intron A2bp1 + chr3L_4_8530001 chr3L_8530001 ISO1-AS-Emb123 130 chr3L 6499634 6499634 chr3L 10954067 10954067 11 4454433 78.5 69.5 74.0 0.1 4454433 chr3L 6499634 intron sfl + chr3L 8726850 intron Cp18 + chr3L 10954067 intergenic not near genes chr3L_11_8725001 chr3L_8725001 ISO1-AS-Emb123 131 chr3L 6765213 6765213 chr3L 22970736 22970737 7 16205524 88.0 81.5 84.8 0.1 16205524 chr3L 6765213 intergenic not near genes chr3L 14867975 exon CG17839 + chr3L 22970737 intergenic not near genes chr3L_7_14865001 chr3L_14865001 ISO1-AS-Emb123 132 chr3L 6855899 6855908 chr3L 6860707 6860716 Doc 10 4808 30.5 23.5 27.0 0.4 4817 chr3L 6855899 intergenic not near genes chr3L 6858308 intergenic not near genes chr3L 6860716 intergenic not near genes chr3L_10_6855001 chr3L_6855001 ISO1-AS-Emb123 133 chr3L 6855910 6855943 chr3L 6860704 6860751 Doc 27 4802 13.0 22.0 17.5 1.5 4841 chr3L 6855910 intergenic not near genes chr3L 6858330 intergenic not near genes chr3L 6860751 intergenic not near genes chr3L_27_6855001 chr3L_6855001 ISO1-AS-Emb123 134 chr3L 7201270 7201270 chr3L 21448026 21448027 6 14246756 68.0 78.0 73.0 0.1 14246757 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448027 3` UTR Syx7 + chr3L_6_14320001 chr3L_14320001 ISO1-AS-Emb123 135 chr3L 7759096 7759096 chr3L 24359858 24359858 10 16600762 70.5 60.0 65.2 0.2 16600762 chr3L 7759096 3` UTR CG32373 + chr3L 16059477 intron Mbs + chr3L 24359858 intron nvd + chr3L_10_16055001 chr3L_16055001 ISO1-AS-Emb123 136 chr3L 8481749 8481804 chr3L 8490930 8490953 roo 58 9182 13.0 14.0 13.5 4.0 9204 chr3L 8481749 intron CG43163 - chr3L 8486351 intron CG43163 - chr3L 8490953 intron CG43163 - chr3L_58_8485001 chr3L_8485001 ISO1-AS-Emb123 137 chr3L 8710148 8710148 chr3L 11913475 11913475 4 3203327 79.0 76.0 77.5 0.1 3203327 chr3L 8710148 intergenic not near genes chr3L 10311812 intergenic not near genes chr3L 11913475 intron CG44837 - chr3L_4_10310001 chr3L_10310001 ISO1-AS-Emb123 138 chr3L 8791252 8791299 chr3L 8796697 8796697 I-element 42 5443 18.0 28.5 23.2 1.7 5445 chr3L 8791252 exon Fhos + chr3L 8793974 intron Fhos + chr3L 8796697 intron Fhos + chr3L_42_8790001 chr3L_8790001 ISO1-AS-Emb123 139 chr3L 9013690 9013692 chr3L 18417066 18417066 17 9403375 73.5 81.5 77.5 0.2 9403376 chr3L 9013690 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_17_13715001 chr3L_13715001 ISO1-AS-Emb123 140 chr3L 9164673 9164709 chr3L 9166165 9166201 hobo 27 1491 26.0 0.5 13.2 1.9 1528 chr3L 9164673 intron Rdl - chr3L 9165437 intron Rdl - chr3L 9166201 intron Rdl - chr3L_27_9165001 chr3L_9165001 ISO1-AS-Emb123 141 chr3L 9307796 9307796 chr3L 22908066 22908066 7 13600270 71.0 79.5 75.2 0.1 13600270 chr3L 9307796 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_7_16105001 chr3L_16105001 ISO1-AS-Emb123 142 chr3L 9313026 9313027 chr3L 11777678 11777678 7 2464652 63.5 82.0 72.8 0.1 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_7_10545001 chr3L_10545001 ISO1-AS-Emb123 143 chr3L 9526458 9526510 chr3L 9528163 9528215 Doc 51 1705 24.0 26.5 25.2 1.9 1757 chr3L 9526458 intergenic not near genes chr3L 9527336 intergenic not near genes chr3L 9528215 intergenic not near genes chr3L_51_9525001 chr3L_9525001 ISO1-AS-Emb123 144 chr3L 10349462 10349497 chr3L 17891974 17892009 4 7542512 72.5 80.0 76.2 0.1 7542547 chr3L 10349462 intron CR44327 + chr3L 14120736 intron Sox21b - chr3L 17892009 3` UTR Tsp74F - chr3L_4_14120001 chr3L_14120001 ISO1-AS-Emb123 145 chr3L 6765213 6765213 chr3L 10698987 10698987 5 3933774 88.0 72.5 80.2 0.1 3933774 chr3L 6765213 intergenic not near genes chr3L 8732100 exon Cp16 + chr3L 10698987 intergenic not near genes chr3L_5_8730001 chr3L_8730001 ISO1-AS-Emb123 146 chr3L 10789354 10789394 chr3L 22084299 22084299 8 11294931 79.0 81.5 80.2 0.1 11294945 chr3L 10789354 5` UTR CR44545 + chr3L 16436826 intron,intron CG33158 +,dsx-c73A - chr3L 22084299 intergenic not near genes chr3L_8_16435001 chr3L_16435001 ISO1-AS-Emb123 147 chr3L 10836564 10836565 chr3L 20924502 20924503 6 10087938 76.5 100.5 88.5 0.1 10087939 chr3L 10836564 intergenic not near genes chr3L 15880534 intron pHCl - chr3L 20924503 intergenic not near genes chr3L_6_15880001 chr3L_15880001 ISO1-AS-Emb123 148 chr3L 10972761 10972761 chr3L 17915569 17915570 5 6942808 68.0 64.5 66.2 0.1 6942809 chr3L 10972761 intron CG14147 + chr3L 14444166 intron bbg - chr3L 17915570 intergenic not near genes chr3L_5_14440001 chr3L_14440001 ISO1-AS-Emb123 149 chr3L 11529482 11529482 chr3L 20924502 20924503 4 9395020 68.5 100.5 84.5 0.0 9395021 chr3L 11529482 intron Mob2 - chr3L 16226992 exon l(3)72Dn - chr3L 20924503 intergenic not near genes chr3L_4_16225001 chr3L_16225001 ISO1-AS-Emb123 150 chr3L 7749470 7749471 chr3L 11777678 11777678 8 4028207 73.5 82.0 77.8 0.1 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_8_9760001 chr3L_9760001 ISO1-AS-Emb123 151 chr3L 9313026 9313026 chr3L 11777678 11777678 7 2464652 62.5 82.0 72.2 0.1 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_7_10545001 chr3L_10545001 ISO1-AS-Emb123 152 chr3L 11777678 11777678 chr3L 12163305 12163305 4 385627 85.0 66.5 75.8 0.1 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_4_11970001 chr3L_11970001 ISO1-AS-Emb123 153 chr3L 12265940 12265941 chr3L 21448026 21448026 17 9182085 75.5 78.0 76.8 0.2 9182086 chr3L 12265940 intron app - chr3L 16856983 intron,exon Rh4 -,sina + chr3L 21448026 3` UTR Syx7 + chr3L_17_16855001 chr3L_16855001 ISO1-AS-Emb123 154 chr3L 13009862 13009862 chr3L 22908066 22908067 5 9898204 81.5 79.5 80.5 0.1 9898205 chr3L 13009862 intron CG11261 - chr3L 17958964 intron Eip75B - chr3L 22908067 intergenic not near genes chr3L_5_17955001 chr3L_17955001 ISO1-AS-Emb123 155 chr3L 6499634 6499634 chr3L 14201833 14201833 19 7702199 78.5 86.5 82.5 0.2 7702199 chr3L 6499634 intron sfl + chr3L 10350734 intron CR44327 + chr3L 14201833 intron nuf + chr3L_19_10350001 chr3L_10350001 ISO1-AS-Emb123 156 chr3L 15393109 15393109 chr3L 17888115 17888116 4 2495006 70.5 92.5 81.5 0.0 2495007 chr3L 15393109 intergenic not near genes chr3L 16640612 intron Abl - chr3L 17888116 intron CG7402 + chr3L_4_16640001 chr3L_16640001 ISO1-AS-Emb123 157 chr3L 15416952 15416952 chr3L 21164095 21164095 4 5747143 69.5 82.0 75.8 0.1 5747143 chr3L 15416952 intergenic not near genes chr3L 18290524 intergenic not near genes chr3L 21164095 intron Ac78C - chr3L_4_18290001 chr3L_18290001 ISO1-AS-Emb123 158 chr3L 15416953 15416953 chr3L 21164093 21164095 4 5747142 70.0 83.0 76.5 0.1 5747142 chr3L 15416953 intergenic not near genes chr3L 18290524 intergenic not near genes chr3L 21164095 intron Ac78C - chr3L_4_18290001 chr3L_18290001 ISO1-AS-Emb123 159 chr3L 15696054 15696054 chr3L 23941244 23941247 4 8245192 65.0 73.5 69.2 0.1 8245193 chr3L 15696054 intergenic not near genes chr3L 19818650 exon Deaf1 + chr3L 23941247 intron CG40470 - chr3L_4_19815001 chr3L_19815001 ISO1-AS-Emb123 160 chr3L 16062065 16062065 chr3L 17915570 17915570 4 1853505 88.0 65.5 76.8 0.1 1853505 chr3L 16062065 intron Mbs + chr3L 16988818 intron Exn + chr3L 17915570 intergenic not near genes chr3L_4_16985001 chr3L_16985001 ISO1-AS-Emb123 161 chr3L 5520315 5520315 chr3L 16725551 16725551 9 11205236 79.5 104.5 92.0 0.1 11205236 chr3L 5520315 intron Lkr - chr3L 11122933 exon Ufd1-like - chr3L 16725551 3` UTR CG13026 - chr3L_9_11120001 chr3L_11120001 ISO1-AS-Emb123 162 chr3L 5520315 5520315 chr3L 16725552 16725552 22 11205237 79.5 104.5 92.0 0.2 11205237 chr3L 5520315 intron Lkr - chr3L 11122934 exon Ufd1-like - chr3L 16725552 3` UTR CG13026 - chr3L_22_11120001 chr3L_11120001 ISO1-AS-Emb123 163 chr3L 16725552 16725552 chr3L 17888111 17888111 4 1162559 93.5 92.5 93.0 0.0 1162559 chr3L 16725552 3` UTR CG13026 - chr3L 17306832 intergenic not near genes chr3L 17888111 intron CG7402 + chr3L_4_17305001 chr3L_17305001 ISO1-AS-Emb123 164 chr3L 16725552 16725552 chr3L 20924502 20924503 9 4198951 93.5 100.5 97.0 0.1 4198951 chr3L 16725552 3` UTR CG13026 - chr3L 18825028 intron Cat + chr3L 20924503 intergenic not near genes chr3L_9_18825001 chr3L_18825001 ISO1-AS-Emb123 165 chr3L 10696271 10696271 chr3L 16725555 16725555 4 6029284 71.5 104.0 87.8 0.0 6029284 chr3L 10696271 intron NijA - chr3L 13710913 intron bru-3 - chr3L 16725555 3` UTR CG13026 - chr3L_4_13710001 chr3L_13710001 ISO1-AS-Emb123 166 chr3L 17849599 17849599 chr3L 24359858 24359858 40 6510259 90.5 60.0 75.2 0.5 6510259 chr3L 17849599 3` UTR CG7430 + chr3L 21104728 intron ko - chr3L 24359858 intron nvd + chr3L_40_21100001 chr3L_21100001 ISO1-AS-Emb123 167 chr3L 16731387 16731387 chr3L 17888117 17888117 5 1156730 73.0 94.5 83.8 0.1 1156730 chr3L 16731387 intergenic not near genes chr3L 17309752 intergenic not near genes chr3L 17888117 intron CG7402 + chr3L_5_17305001 chr3L_17305001 ISO1-AS-Emb123 168 chr3L 18198929 18198931 chr3L 24821492 24821494 64 6622563 76.0 81.5 78.8 0.8 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_64_21510001 chr3L_21510001 ISO1-AS-Emb123 169 chr3L 9013689 9013695 chr3L 18417066 18417066 16 9403375 71.5 81.5 76.5 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_16_13715001 chr3L_13715001 ISO1-AS-Emb123 170 chr3L 18497498 18497501 chr3L 20525228 20525230 5 2027729 71.5 84.5 78.0 0.1 2027732 chr3L 18497498 intron AstC-R2 - chr3L 19511364 intergenic not near genes chr3L 20525230 intron CG4825 - chr3L_5_19510001 chr3L_19510001 ISO1-AS-Emb123 171 chr3L 19220633 19220633 chr3L 22908067 22908067 4 3687434 81.0 79.5 80.2 0.0 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_4_21060001 chr3L_21060001 ISO1-AS-Emb123 172 chr3L 19220634 19220637 chr3L 22908066 22908067 14 3687431 79.5 79.5 79.5 0.2 3687433 chr3L 19220634 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_14_21060001 chr3L_21060001 ISO1-AS-Emb123 173 chr3L 19409897 19409898 chr3L 21448026 21448026 12 2038128 78.5 78.0 78.2 0.2 2038129 chr3L 19409897 intron CG32206 - chr3L 20428962 exon CG5262 - chr3L 21448026 3` UTR Syx7 + chr3L_12_20425001 chr3L_20425001 ISO1-AS-Emb123 174 chr3L 1179431 1179431 chr3L 20493661 20493661 84 19314230 67.5 94.5 81.0 1.0 19314230 chr3L 1179431 intergenic not near genes chr3L 10836546 intergenic not near genes chr3L 20493661 intron,intron ZnT77C -,CG6020 + chr3L_84_10835001 chr3L_10835001 ISO1-AS-Emb123 175 chr3L 1179431 1179432 chr3L 20493662 20493662 11 19314231 68.0 94.5 81.2 0.1 19314231 chr3L 1179431 intergenic not near genes chr3L 10836546 intergenic not near genes chr3L 20493662 intron,intron ZnT77C -,CG6020 + chr3L_11_10835001 chr3L_10835001 ISO1-AS-Emb123 176 chr3L 20525228 20525228 chr3L 22908066 22908067 40 2382838 82.5 79.5 81.0 0.5 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_40_21715001 chr3L_21715001 ISO1-AS-Emb123 177 chr3L 20525228 20525228 chr3L 24821492 24821494 55 4296265 82.5 81.5 82.0 0.7 4296266 chr3L 20525228 intron CG4825 - chr3L 22673361 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_55_22670001 chr3L_22670001 ISO1-AS-Emb123 178 chr3L 3368224 3368225 chr3L 20525229 20525229 5 17157005 83.0 84.0 83.5 0.1 17157005 chr3L 3368224 intergenic kst + chr3L 11946726 intergenic not near genes chr3L 20525229 intron CG4825 - chr3L_5_11945001 chr3L_11945001 ISO1-AS-Emb123 179 chr3L 20525229 20525229 chr3L 21448026 21448026 5 922797 82.5 78.0 80.2 0.1 922797 chr3L 20525229 intron CG4825 - chr3L 20986628 intergenic not near genes chr3L 21448026 3` UTR Syx7 + chr3L_5_20985001 chr3L_20985001 ISO1-AS-Emb123 180 chr3L 20525229 20525229 chr3L 22908066 22908067 82 2382838 82.5 79.5 81.0 1.0 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_82_21715001 chr3L_21715001 ISO1-AS-Emb123 181 chr3L 20525229 20525229 chr3L 24821492 24821494 47 4296264 82.5 81.5 82.0 0.6 4296265 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_47_22670001 chr3L_22670001 ISO1-AS-Emb123 182 chr3L 20525229 20525229 chr3L 25486593 25486594 gypsy12 4 4961365 82.5 68.5 75.5 0.1 4961365 chr3L 20525229 intron CG4825 - chr3L 23005912 intron nrm + chr3L 25486594 intron CG41343 - chr3L_4_23005001 chr3L_23005001 ISO1-AS-Emb123 183 chr3L 3368223 3368225 chr3L 20525230 20525230 5 17157006 83.0 83.5 83.2 0.1 17157007 chr3L 3368223 intergenic kst + chr3L 11946726 intergenic not near genes chr3L 20525230 intron CG4825 - chr3L_5_11945001 chr3L_11945001 ISO1-AS-Emb123 184 chr3L 20033609 20033615 chr3L 20525230 20525230 4 491618 84.0 83.5 83.8 0.0 491621 chr3L 20033609 intergenic not near genes chr3L 20279420 intron gogo - chr3L 20525230 intron CG4825 - chr3L_4_20275001 chr3L_20275001 ISO1-AS-Emb123 185 chr3L 20525230 20525230 chr3L 21448026 21448027 7 922797 83.0 78.0 80.5 0.1 922797 chr3L 20525230 intron CG4825 - chr3L 20986628 intergenic not near genes chr3L 21448027 3` UTR Syx7 + chr3L_7_20985001 chr3L_20985001 ISO1-AS-Emb123 186 chr3L 20525230 20525230 chr3L 22908066 22908067 11 2382837 83.0 79.5 81.2 0.1 2382837 chr3L 20525230 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_11_21715001 chr3L_21715001 ISO1-AS-Emb123 187 chr3L 20525230 20525230 chr3L 24821490 24821494 34 4296264 83.0 83.0 83.0 0.4 4296264 chr3L 20525230 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_34_22670001 chr3L_22670001 ISO1-AS-Emb123 188 chr3L 20525230 20525230 chr3L 25486593 25486594 gypsy12 5 4961363 83.0 68.5 75.8 0.1 4961364 chr3L 20525230 intron CG4825 - chr3L 23005912 intron nrm + chr3L 25486594 intron CG41343 - chr3L_5_23005001 chr3L_23005001 ISO1-AS-Emb123 189 chr3L 21014890 21014947 chr3L 21023395 21023453 Tirant 53 8505 17.5 19.0 18.2 2.8 8563 chr3L 21014890 intron skd - chr3L 21019172 intron skd - chr3L 21023453 intron skd - chr3L_53_21015001 chr3L_21015001 ISO1-AS-Emb123 190 chr3L 21306123 21306178 chr3L 21315307 21315362 roo 64 9184 25.0 21.0 23.0 2.7 9239 chr3L 21306123 3` UTR CG7632 + chr3L 21310742 intron Pc - chr3L 21315362 3` UTR Pc - chr3L_64_21310001 chr3L_21310001 ISO1-AS-Emb123 191 chr3L 4341331 4341335 chr3L 21448026 21448026 17 17106694 81.5 78.0 79.8 0.2 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_17_12890001 chr3L_12890001 ISO1-AS-Emb123 192 chr3L 7201270 7201270 chr3L 21448026 21448026 4 14246756 68.0 78.0 73.0 0.1 14246756 chr3L 7201270 intergenic not near genes chr3L 14324648 intron,intron fz +,CR45025 - chr3L 21448026 3` UTR Syx7 + chr3L_4_14320001 chr3L_14320001 ISO1-AS-Emb123 193 chr3L 12265940 12265941 chr3L 21448026 21448026 4 9182086 75.5 78.0 76.8 0.1 9182086 chr3L 12265940 intron app - chr3L 16856983 intron,exon Rh4 -,sina + chr3L 21448026 3` UTR Syx7 + chr3L_4_16855001 chr3L_16855001 ISO1-AS-Emb123 194 chr3L 21448026 21448026 chr3L 25486595 25486595 Cr1a 4 4038569 76.0 68.0 72.0 0.1 4038569 chr3L 21448026 3` UTR Syx7 + chr3L 23467310 intergenic not near genes chr3L 25486595 intron CG41343 - chr3L_4_23465001 chr3L_23465001 ISO1-AS-Emb123 195 chr3L 4341332 4341335 chr3L 21448027 21448027 14 17106694 81.5 78.5 80.0 0.2 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_14_12890001 chr3L_12890001 ISO1-AS-Emb123 196 chr3L 21448027 21448027 chr3L 25486593 25486596 Cr1a 7 4038568 76.0 68.5 72.2 0.1 4038569 chr3L 21448027 3` UTR Syx7 + chr3L 23467312 intergenic not near genes chr3L 25486596 intron CG41343 - chr3L_7_23465001 chr3L_23465001 ISO1-AS-Emb123 197 chr3L 22577597 22577644 chr3L 22582410 22582457 Doc 48 4812 17.5 21.5 19.5 2.3 4860 chr3L 22577597 intergenic not near genes chr3L 22580027 intergenic not near genes chr3L 22582457 3` UTR CG14459 - chr3L_48_22580001 chr3L_22580001 ISO1-AS-Emb123 198 chr3L 22865962 22866012 chr3L 22867120 22867170 Doc 56 1158 25.0 18.5 21.8 2.5 1208 chr3L 22865962 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867170 intron CG33170 + chr3L_56_22865001 chr3L_22865001 ISO1-AS-Emb123 199 chr3L 9307795 9307796 chr3L 22908066 22908066 8 13600270 71.0 79.5 75.2 0.1 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_8_16105001 chr3L_16105001 ISO1-AS-Emb123 200 chr3L 19220632 19220637 chr3L 22908066 22908066 66 3687432 79.5 79.5 79.5 0.8 3687434 chr3L 19220632 intron fz2 - chr3L 21064349 intron siz + chr3L 22908066 intergenic not near genes chr3L_66_21060001 chr3L_21060001 ISO1-AS-Emb123 201 chr3L 20525228 20525230 chr3L 22908066 22908066 62 2382837 83.0 79.5 81.2 0.8 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_62_21715001 chr3L_21715001 ISO1-AS-Emb123 202 chr3L 9307795 9307796 chr3L 22908067 22908067 6 13600271 71.0 79.5 75.2 0.1 13600272 chr3L 9307795 intergenic not near genes chr3L 16107931 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_6_16105001 chr3L_16105001 ISO1-AS-Emb123 203 chr3L 19220633 19220637 chr3L 22908067 22908067 34 3687433 79.5 79.5 79.5 0.4 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_34_21060001 chr3L_21060001 ISO1-AS-Emb123 204 chr3L 20525228 20525230 chr3L 22908067 22908067 52 2382837 83.0 79.5 81.2 0.6 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_52_21715001 chr3L_21715001 ISO1-AS-Emb123 205 chr3L 17915569 17915570 chr3L 22970736 22970736 7 5055166 64.0 81.5 72.8 0.1 5055167 chr3L 17915569 intergenic not near genes chr3L 20443152 intron CG5910 + chr3L 22970736 intergenic not near genes chr3L_7_20440001 chr3L_20440001 ISO1-AS-Emb123 206 chr3L 19217414 19217414 chr3L 22970736 22970736 4 3753322 62.5 81.5 72.0 0.1 3753322 chr3L 19217414 intron fz2 - chr3L 21094075 intron ko - chr3L 22970736 intergenic not near genes chr3L_4_21090001 chr3L_21090001 ISO1-AS-Emb123 207 chr3L 17915569 17915570 chr3L 22970737 22970737 5 5055167 64.0 82.0 73.0 0.1 5055168 chr3L 17915569 intergenic not near genes chr3L 20443153 intron CG5910 + chr3L 22970737 intergenic not near genes chr3L_5_20440001 chr3L_20440001 ISO1-AS-Emb123 208 chr3L 21448026 21448026 chr3L 23208041 23208049 8 1760019 76.0 82.5 79.2 0.1 1760023 chr3L 21448026 3` UTR Syx7 + chr3L 22328038 intron Ten-m - chr3L 23208049 intron nAChRalpha4 + chr3L_8_22325001 chr3L_22325001 ISO1-AS-Emb123 209 chr3L 20525228 20525230 chr3L 23233834 23233835 6 2708605 83.0 91.0 87.0 0.1 2708607 chr3L 20525228 intron CG4825 - chr3L 21879532 intron mub + chr3L 23233835 intron nAChRalpha4 + chr3L_6_21875001 chr3L_21875001 ISO1-AS-Emb123 210 chr3L 18454071 18454071 chr3L 23264180 23264180 23 4810109 70.0 72.0 71.0 0.3 4810109 chr3L 18454071 intergenic not near genes chr3L 20859126 intron CG32432 - chr3L 23264180 intron nAChRalpha4 + chr3L_23_20855001 chr3L_20855001 ISO1-AS-Emb123 211 chr3L 23611205 23611212 chr3L 27363494 27363499 Gypsy12A_LTR 12 3752289 79.5 59.5 69.5 0.2 3752294 chr3L 23611205 intron AGO3 + chr3L 25487352 intron CG41343 - chr3L 27363499 intron Dbp80 + chr3L_12_25485001 chr3L_25485001 ISO1-AS-Emb123 212 chr3L 1174967 1174967 chr3L 24234289 24234289 6 23059322 70.0 79.5 74.8 0.1 23059322 chr3L 1174967 intron bab2 - chr3L 12704628 intron mirr + chr3L 24234289 intron Snap25 + chr3L_6_12700001 chr3L_12700001 ISO1-AS-Emb123 213 chr3L 5555247 5555248 chr3L 24234289 24234289 5 18679042 77.5 79.5 78.5 0.1 18679042 chr3L 5555247 intergenic not near genes chr3L 14894768 intergenic CG34245 - chr3L 24234289 intron Snap25 + chr3L_5_14890001 chr3L_14890001 ISO1-AS-Emb123 214 chr3L 17888115 17888117 chr3L 24350876 24350877 6 6462761 89.5 76.5 83.0 0.1 6462762 chr3L 17888115 intron CG7402 + chr3L 21119496 intron ko - chr3L 24350877 intron nvd + chr3L_6_21115001 chr3L_21115001 ISO1-AS-Emb123 215 chr3L 24791870 24791915 chr3L 24796674 24796712 Doc 52 4804 27.5 20.5 24.0 2.1 4842 chr3L 24791870 intergenic not near genes chr3L 24794291 intergenic not near genes chr3L 24796712 intergenic not near genes chr3L_52_24790001 chr3L_24790001 ISO1-AS-Emb123 216 chr3L 24811049 24811051 chr3L 24821492 24821494 mdg1 7 10443 75.0 81.5 78.2 0.1 10445 chr3L 24811049 intergenic not near genes chr3L 24816272 intergenic not near genes chr3L 24821494 intergenic not near genes chr3L_7_24815001 chr3L_24815001 ISO1-AS-Emb123 217 chr3L 18198930 18198930 chr3L 24821492 24821492 49 6622562 76.5 81.5 79.0 0.6 6622562 chr3L 18198930 intergenic not near genes chr3L 21510211 intron M6 + chr3L 24821492 intergenic not near genes chr3L_49_21510001 chr3L_21510001 ISO1-AS-Emb123 218 chr3L 20525227 20525230 chr3L 24821492 24821492 53 4296263 83.0 81.5 82.2 0.6 4296265 chr3L 20525227 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_53_22670001 chr3L_22670001 ISO1-AS-Emb123 219 chr3L 22908066 22908066 chr3L 24821492 24821492 12 1913426 81.5 81.5 81.5 0.1 1913426 chr3L 22908066 intergenic not near genes chr3L 23864779 intron CG40470 - chr3L 24821492 intergenic not near genes chr3L_12_23860001 chr3L_23860001 ISO1-AS-Emb123 220 chr3L 24811049 24811050 chr3L 24821492 24821492 mdg1 4 10442 74.0 81.5 77.8 0.1 10443 chr3L 24811049 intergenic not near genes chr3L 24816270 intergenic not near genes chr3L 24821492 intergenic not near genes chr3L_4_24815001 chr3L_24815001 ISO1-AS-Emb123 221 chr3L 18198930 18198931 chr3L 24821493 24821493 27 6622562 76.0 81.0 78.5 0.3 6622563 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_27_21510001 chr3L_21510001 ISO1-AS-Emb123 222 chr3L 20525228 20525230 chr3L 24821493 24821493 38 4296264 83.0 81.0 82.0 0.5 4296265 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_38_22670001 chr3L_22670001 ISO1-AS-Emb123 223 chr3L 22908067 22908067 chr3L 24821493 24821493 5 1913426 81.5 81.0 81.2 0.1 1913426 chr3L 22908067 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821493 intergenic not near genes chr3L_5_23860001 chr3L_23860001 ISO1-AS-Emb123 224 chr3L 24811050 24811050 chr3L 24821493 24821493 mdg1 4 10443 74.0 81.0 77.5 0.1 10443 chr3L 24811050 intergenic not near genes chr3L 24816272 intergenic not near genes chr3L 24821493 intergenic not near genes chr3L_4_24815001 chr3L_24815001 ISO1-AS-Emb123 225 chr3L 18198930 18198931 chr3L 24821494 24821494 10 6622563 76.0 80.0 78.0 0.1 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_10_21510001 chr3L_21510001 ISO1-AS-Emb123 226 chr3L 20525227 20525231 chr3L 24821494 24821494 41 4296265 83.0 80.0 81.5 0.5 4296267 chr3L 20525227 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_41_22670001 chr3L_22670001 ISO1-AS-Emb123 227 chr3L 20525230 20525230 chr3L 24821495 24821495 4 4296265 83.0 79.0 81.0 0.0 4296265 chr3L 20525230 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821495 intergenic not near genes chr3L_4_22670001 chr3L_22670001 ISO1-AS-Emb123 228 chr3L 25190063 25190094 chr3L 25191238 25191269 1360 7 1175 90.5 75.0 82.8 0.1 1206 chr3L 25190063 intergenic not near genes chr3L 25190666 intergenic not near genes chr3L 25191269 intergenic not near genes chr3L_7_25190001 chr3L_25190001 ISO1-AS-Emb123 229 chr3L 24894892 24894900 chr3L 25442546 25442554 Idefix 7 547654 64.5 59.5 62.0 0.1 547662 chr3L 24894892 intergenic not near genes chr3L 25168723 intergenic not near genes chr3L 25442554 intergenic not near genes chr3L_7_25165001 chr3L_25165001 ISO1-AS-Emb123 230 chr3L 23481452 23481454 chr3L 25442556 25442558 Porto1 7 1961104 63.0 61.5 62.2 0.1 1961106 chr3L 23481452 intergenic not near genes chr3L 24462005 intergenic not near genes chr3L 25442558 intergenic not near genes chr3L_7_24460001 chr3L_24460001 ISO1-AS-Emb123 231 chr3L 21448026 21448026 chr3L 25486593 25486593 Cr1a 7 4038567 76.0 68.5 72.2 0.1 4038567 chr3L 21448026 3` UTR Syx7 + chr3L 23467310 intergenic not near genes chr3L 25486593 intron CG41343 - chr3L_7_23465001 chr3L_23465001 ISO1-AS-Emb123 232 chr3L 20525228 20525232 chr3L 25486594 25486594 gypsy12 4 4961365 83.5 68.5 76.0 0.1 4961366 chr3L 20525228 intron CG4825 - chr3L 23005911 intron nrm + chr3L 25486594 intron CG41343 - chr3L_4_23005001 chr3L_23005001 ISO1-AS-Emb123 233 chr3L 21448026 21448027 chr3L 25486594 25486594 Cr1a 13 4038568 76.0 68.5 72.2 0.2 4038568 chr3L 21448026 3` UTR Syx7 + chr3L 23467310 intergenic not near genes chr3L 25486594 intron CG41343 - chr3L_13_23465001 chr3L_23465001 ISO1-AS-Emb123 234 chr3L 25502178 25502218 chr3L 25502306 25502346 9 128 61.5 69.5 65.5 0.1 168 chr3L 25502178 intron CG41343 - chr3L 25502262 intron CG41343 - chr3L 25502346 intron CG41343 - chr3L_9_25500001 chr3L_25500001 ISO1-AS-Emb123 235 chr3L 23941244 23941246 chr3L 26882298 26882300 1360 9 2941054 77.5 11.5 44.5 0.2 2941056 chr3L 23941244 intron CG40470 - chr3L 25411772 intergenic not near genes chr3L 26882300 intergenic not near genes chr3L_9_25410001 chr3L_25410001 ISO1-AS-Emb123 236 chr3L 6724358 6724358 chr3L 27146089 27146094 4 20421732 60.0 93.5 76.8 0.1 20421736 chr3L 6724358 intergenic not near genes chr3L 16935226 5` UTR CG11905 - chr3L 27146094 intron vtd + chr3L_4_16935001 chr3L_16935001 ISO1-AS-Emb123 237 chr3L 27172781 27172820 chr3L 27172908 27172910 13 124 95.5 82.0 88.8 0.1 129 chr3L 27172781 intergenic not near genes chr3L 27172846 intergenic not near genes chr3L 27172910 intergenic not near genes chr3L_13_27170001 chr3L_27170001 ISO1-AS-Emb123 238 chr3L 21164093 21164095 chr3L 27176040 27176041 ZAM 70 6011946 84.0 76.0 80.0 0.9 6011948 chr3L 21164093 intron Ac78C - chr3L 24170067 intron Snap25 + chr3L 27176041 intergenic not near genes chr3L_70_24170001 chr3L_24170001 ISO1-AS-Emb123 239 chr3L 27383181 27383204 chr3L 27383351 27383374 22 170 126.0 91.0 108.5 0.2 193 chr3L 27383181 intron Dbp80 + chr3L 27383278 intron Dbp80 + chr3L 27383374 intron Dbp80 + chr3L_22_27380001 chr3L_27380001 ISO1-AS-Emb123 240 chr3L 27390435 27390710 chr3L 27390681 27390814 50 117 118.5 115.0 116.8 0.4 379 chr3L 27390435 intron Dbp80 + chr3L 27390624 intron Dbp80 + chr3L 27390814 intron Dbp80 + chr3L_50_27390001 chr3L_27390001 ISO1-AS-Emb123 241 chr3R 98954 98955 chr3R 109521 109522 6 10567 36.0 2.0 19.0 0.3 10568 chr3R 98954 intergenic not near genes chr3R 104238 intergenic not near genes chr3R 109522 intergenic not near genes chr3R_6_100001 chr3R_100001 ISO1-AS-Emb123 242 chr3R 97112 97117 chr3R 99847 99848 7 2732 70.0 64.5 67.2 0.1 2736 chr3R 97112 intergenic not near genes chr3R 98480 intergenic not near genes chr3R 99848 intergenic not near genes chr3R_7_95001 chr3R_95001 ISO1-AS-Emb123 243 chr3R 377392 377392 chr3R 25185956 25185957 6 24808565 68.5 87.5 78.0 0.1 24808565 chr3R 377392 intergenic not near genes chr3R 12781674 intron beat-Vc - chr3R 25185957 intron,intron lobo -,dan + chr3R_6_12780001 chr3R_12780001 ISO1-AS-Emb123 244 chr3R 377392 377392 chr3R 26983903 26983903 8 26606511 68.5 76.0 72.2 0.1 26606511 chr3R 377392 intergenic not near genes chr3R 13680648 exon omd - chr3R 26983903 intron CG14253 + chr3R_8_13680001 chr3R_13680001 ISO1-AS-Emb123 245 chr3R 1012831 1012836 chr3R 3921597 3921602 F-element 5 2908766 64.5 78.0 71.2 0.1 2908771 chr3R 1012831 intergenic not near genes chr3R 2467216 intergenic not near genes chr3R 3921602 intergenic not near genes chr3R_5_2465001 chr3R_2465001 ISO1-AS-Emb123 246 chr3R 1252449 1252452 chr3R 1252571 1252574 5 122 64.0 80.0 72.0 0.1 125 chr3R 1252449 intergenic not near genes chr3R 1252512 intergenic not near genes chr3R 1252574 intergenic not near genes chr3R_5_1250001 chr3R_1250001 ISO1-AS-Emb123 247 chr3R 1252459 1252463 chr3R 1252570 1252574 5 111 63.0 81.0 72.0 0.1 115 chr3R 1252459 intergenic not near genes chr3R 1252516 intergenic not near genes chr3R 1252574 intergenic not near genes chr3R_5_1250001 chr3R_1250001 ISO1-AS-Emb123 248 chr3R 1252444 1252451 chr3R 1266230 1266237 297 12 13786 64.0 73.5 68.8 0.2 13793 chr3R 1252444 intergenic not near genes chr3R 1259340 intergenic not near genes chr3R 1266237 intergenic not near genes chr3R_12_1255001 chr3R_1255001 ISO1-AS-Emb123 249 chr3R 1438133 1438137 chr3R 3026648 3026652 HMS-Beagle2 10 1588515 62.5 60.5 61.5 0.2 1588519 chr3R 1438133 intron CG40155 + chr3R 2232392 intergenic not near genes chr3R 3026652 intron CG42618 - chr3R_10_2230001 chr3R_2230001 ISO1-AS-Emb123 250 chr3R 1996418 1996420 chr3R 13957372 13957373 6 11960954 74.5 82.5 78.5 0.1 11960955 chr3R 1996418 intergenic not near genes chr3R 7976896 exon CD98hc - chr3R 13957373 intergenic not near genes chr3R_6_7975001 chr3R_7975001 ISO1-AS-Emb123 251 chr3R 1511854 1511860 chr3R 2516748 2516761 297 14 1004895 79.0 182.5 130.8 0.1 1004907 chr3R 1511854 intergenic not near genes chr3R 2014308 intergenic not near genes chr3R 2516761 intergenic not near genes chr3R_14_2010001 chr3R_2010001 ISO1-AS-Emb123 252 chr3R 2534111 2534167 chr3R 2541705 2541722 72 7593 115.5 142.5 129.0 0.6 7611 chr3R 2534111 intergenic not near genes chr3R 2537916 intergenic not near genes chr3R 2541722 intergenic not near genes chr3R_72_2535001 chr3R_2535001 ISO1-AS-Emb123 253 chr3R 2650487 2650487 chr3R 30562272 30562275 5 27911786 83.0 78.5 80.8 0.1 27911788 chr3R 2650487 intron CG41056 - chr3R 16606381 intergenic not near genes chr3R 30562275 intron tmod + chr3R_5_16605001 chr3R_16605001 ISO1-AS-Emb123 254 chr3R 2862196 2862213 chr3R 2862297 2862314 8 101 81.5 81.5 81.5 0.1 118 chr3R 2862196 intergenic not near genes chr3R 2862255 intergenic not near genes chr3R 2862314 intergenic not near genes chr3R_8_2860001 chr3R_2860001 ISO1-AS-Emb123 255 chr3R 1446700 1446701 chr3R 2999354 2999355 invader2 12 1552654 65.5 70.0 67.8 0.2 1552655 chr3R 1446700 intron CG40155 + chr3R 2223028 intergenic not near genes chr3R 2999355 intron CG42618 - chr3R_12_2220001 chr3R_2220001 ISO1-AS-Emb123 256 chr3R 3207407 3207407 chr3R 13957373 13957375 15 10749967 3.5 83.0 43.2 0.3 10749968 chr3R 3207407 intron CG42617 - chr3R 8582391 intron 5-HT2B + chr3R 13957375 intergenic not near genes chr3R_15_8580001 chr3R_8580001 ISO1-AS-Emb123 257 chr3R 3916183 3916205 chr3R 3916315 3916337 27 132 104.0 88.0 96.0 0.3 154 chr3R 3916183 intergenic not near genes chr3R 3916260 intergenic not near genes chr3R 3916337 intergenic not near genes chr3R_27_3915001 chr3R_3915001 ISO1-AS-Emb123 258 chr3R 3989295 3989298 chr3R 4068939 4068942 mdg1 7 79644 49.5 69.5 59.5 0.1 79647 chr3R 3989295 intergenic not near genes chr3R 4029118 intergenic not near genes chr3R 4068942 intergenic not near genes chr3R_7_4025001 chr3R_4025001 ISO1-AS-Emb123 259 chr3R 3989291 3989307 chr3R 4068943 4068951 mdg1 15 79645 48.5 71.0 59.8 0.2 79660 chr3R 3989291 intergenic not near genes chr3R 4029121 intergenic not near genes chr3R 4068951 intergenic not near genes chr3R_15_4025001 chr3R_4025001 ISO1-AS-Emb123 260 chr3R 4568073 4568076 chr3R 4568181 4568197 4 118 78.0 88.5 83.2 0.0 124 chr3R 4568073 intergenic not near genes chr3R 4568135 intergenic not near genes chr3R 4568197 intergenic not near genes chr3R_4_4565001 chr3R_4565001 ISO1-AS-Emb123 261 chr3R 4568314 4568321 chr3R 4568686 4568693 10 372 91.5 78.5 85.0 0.1 379 chr3R 4568314 intergenic not near genes chr3R 4568504 intergenic not near genes chr3R 4568693 intergenic not near genes chr3R_10_4565001 chr3R_4565001 ISO1-AS-Emb123 262 chr3R 5045820 5045877 chr3R 5052947 5053004 HMS-Beagle 57 7127 18.5 16.0 17.2 3.1 7184 chr3R 5045820 3` UTR CR43635 - chr3R 5049412 intergenic not near genes chr3R 5053004 intergenic CR45588 - chr3R_57_5045001 chr3R_5045001 ISO1-AS-Emb123 263 chr3R 5146238 5146238 chr3R 29013339 29013339 21 23867101 74.0 80.5 77.2 0.3 23867101 chr3R 5146238 intergenic not near genes chr3R 17079788 5` UTR Keap1 - chr3R 29013339 intron wat - chr3R_21_17075001 chr3R_17075001 ISO1-AS-Emb123 264 chr3R 6090420 6090421 chr3R 10451877 10451877 7 4361457 70.5 63.5 67.0 0.1 4361457 chr3R 6090420 intron Gasp - chr3R 8271148 intergenic not near genes chr3R 10451877 intergenic not near genes chr3R_7_8270001 chr3R_8270001 ISO1-AS-Emb123 265 chr3R 6158483 6158540 chr3R 6167091 6167148 Tirant 55 8601 14.0 8.5 11.2 4.5 8665 chr3R 6158483 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167148 intergenic CG1077 + chr3R_55_6160001 chr3R_6160001 ISO1-AS-Emb123 266 chr3R 3207407 3207407 chr3R 6412323 6412323 5 3204916 3.5 37.0 20.2 0.2 3204916 chr3R 3207407 intron CG42617 - chr3R 4809865 intron,intron ctrip -,Hus1-like - chr3R 6412323 intron gpp + chr3R_5_4805001 chr3R_4805001 ISO1-AS-Emb123 267 chr3R 3207407 3207407 chr3R 6412324 6412324 4 3204917 3.5 37.0 20.2 0.2 3204917 chr3R 3207407 intron CG42617 - chr3R 4809866 intron,intron ctrip -,Hus1-like - chr3R 6412324 intron gpp + chr3R_4_4805001 chr3R_4805001 ISO1-AS-Emb123 268 chr3R 7094694 7094694 chr3R 7773344 7773344 5 678650 75.5 81.0 78.2 0.1 678650 chr3R 7094694 3` UTR e(y)2b + chr3R 7434019 intergenic not near genes chr3R 7773344 intergenic not near genes chr3R_5_7430001 chr3R_7430001 ISO1-AS-Emb123 269 chr3R 7615598 7615598 chr3R 23980373 23980374 4 16364776 74.5 94.5 84.5 0.0 16364776 chr3R 7615598 intron CG34127 - chr3R 15797986 intron nsl1 + chr3R 23980374 intron CG31140 + chr3R_4_15795001 chr3R_15795001 ISO1-AS-Emb123 270 chr3R 7615600 7615601 chr3R 23980372 23980374 8 16364772 75.5 95.0 85.2 0.1 16364774 chr3R 7615600 intron CG34127 - chr3R 15797987 intron nsl1 + chr3R 23980374 intron CG31140 + chr3R_8_15795001 chr3R_15795001 ISO1-AS-Emb123 271 chr3R 7773344 7773344 chr3R 7890532 7890532 17 117188 83.0 60.5 71.8 0.2 117188 chr3R 7773344 intergenic not near genes chr3R 7831938 intron CG34384 + chr3R 7890532 intron mRpS9 - chr3R_17_7830001 chr3R_7830001 ISO1-AS-Emb123 272 chr3R 7773344 7773344 chr3R 13217327 13217327 6 5443983 83.0 74.0 78.5 0.1 5443983 chr3R 7773344 intergenic not near genes chr3R 10495336 intergenic not near genes chr3R 13217327 intergenic not near genes chr3R_6_10495001 chr3R_10495001 ISO1-AS-Emb123 273 chr3R 7773344 7773344 chr3R 7890530 7890532 12 117186 83.0 60.0 71.5 0.2 117188 chr3R 7773344 intergenic not near genes chr3R 7831938 intron CG34384 + chr3R 7890532 intron mRpS9 - chr3R_12_7830001 chr3R_7830001 ISO1-AS-Emb123 274 chr3R 8287385 8287386 chr3R 22081600 22081601 16 13794215 87.0 83.0 85.0 0.2 13794216 chr3R 8287385 intron CR44318 + chr3R 15184493 intron Gyc88E + chr3R 22081601 intron CG13408 + chr3R_16_15180001 chr3R_15180001 ISO1-AS-Emb123 275 chr3R 8287387 8287387 chr3R 22081601 22081602 4 13794214 86.5 82.5 84.5 0.0 13794215 chr3R 8287387 intron CR44318 + chr3R 15184494 intron Gyc88E + chr3R 22081602 intron CG13408 + chr3R_4_15180001 chr3R_15180001 ISO1-AS-Emb123 276 chr3R 8339246 8339247 chr3R 21907534 21907536 48 13568289 77.5 69.0 73.2 0.6 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_48_15120001 chr3R_15120001 ISO1-AS-Emb123 277 chr3R 8504908 8504955 chr3R 8505794 8505841 74 884 19.5 23.0 21.2 3.3 933 chr3R 8504908 intergenic not near genes chr3R 8505374 intergenic not near genes chr3R 8505841 intergenic not near genes chr3R_74_8505001 chr3R_8505001 ISO1-AS-Emb123 278 chr3R 9330038 9330038 chr3R 18955051 18955052 4 9625014 78.0 78.5 78.2 0.1 9625014 chr3R 9330038 intron CG12951 - chr3R 14142545 intergenic not near genes chr3R 18955052 intron,intron CG42613 +,CG43732 + chr3R_4_14140001 chr3R_14140001 ISO1-AS-Emb123 279 chr3R 9393034 9393035 chr3R 29013339 29013340 5 19620305 83.0 80.5 81.8 0.1 19620306 chr3R 9393034 intron FER - chr3R 19203187 intergenic not near genes chr3R 29013340 intron wat - chr3R_5_19200001 chr3R_19200001 ISO1-AS-Emb123 280 chr3R 9620956 9620956 chr3R 21907534 21907536 22 12286579 92.0 69.0 80.5 0.3 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_22_15760001 chr3R_15760001 ISO1-AS-Emb123 281 chr3R 6090420 6090420 chr3R 10451877 10451877 9 4361457 70.5 63.5 67.0 0.1 4361457 chr3R 6090420 intron Gasp - chr3R 8271148 intergenic not near genes chr3R 10451877 intergenic not near genes chr3R_9_8270001 chr3R_8270001 ISO1-AS-Emb123 282 chr3R 9330038 9330039 chr3R 12814917 12814917 9 3484878 78.5 62.0 70.2 0.1 3484879 chr3R 9330038 intron CG12951 - chr3R 11072478 intergenic not near genes chr3R 12814917 intron CG31345 - chr3R_9_11070001 chr3R_11070001 ISO1-AS-Emb123 283 chr3R 12814917 12814917 chr3R 21418993 21418995 7 8604076 60.5 68.5 64.5 0.1 8604078 chr3R 12814917 intron CG31345 - chr3R 17116956 exon cher - chr3R 21418995 intron lbl - chr3R_7_17115001 chr3R_17115001 ISO1-AS-Emb123 284 chr3R 13062891 13062891 chr3R 19362394 19362394 4 6299503 79.0 77.5 78.2 0.1 6299503 chr3R 13062891 intron sim + chr3R 16212642 intergenic not near genes chr3R 19362394 intergenic not near genes chr3R_4_16210001 chr3R_16210001 ISO1-AS-Emb123 285 chr3R 7773344 7773344 chr3R 13217322 13217325 5 5443980 83.0 75.5 79.2 0.1 5443981 chr3R 7773344 intergenic not near genes chr3R 10495334 intergenic not near genes chr3R 13217325 intergenic not near genes chr3R_5_10495001 chr3R_10495001 ISO1-AS-Emb123 286 chr3R 13693028 13693028 chr3R 21907534 21907536 32 8214507 83.0 69.0 76.0 0.4 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_32_17800001 chr3R_17800001 ISO1-AS-Emb123 287 chr3R 13848460 13848460 chr3R 25551521 25551522 22 11703062 73.5 77.5 75.5 0.3 11703062 chr3R 13848460 intergenic not near genes chr3R 19699991 intergenic not near genes chr3R 25551522 intron msi + chr3R_22_19695001 chr3R_19695001 ISO1-AS-Emb123 288 chr3R 13914981 13915023 chr3R 13915217 13915259 48 236 11.0 16.0 13.5 3.3 278 chr3R 13914981 intergenic not near genes chr3R 13915120 intergenic not near genes chr3R 13915259 intergenic not near genes chr3R_48_13915001 chr3R_13915001 ISO1-AS-Emb123 289 chr3R 15286987 15286987 chr3R 21907534 21907536 8 6620548 58.0 69.0 63.5 0.1 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_8_18595001 chr3R_18595001 ISO1-AS-Emb123 290 chr3R 16703533 16703535 chr3R 29462602 29462602 8 12759068 91.0 63.5 77.2 0.1 12759069 chr3R 16703533 intron Ubx - chr3R 23083068 intron CG13830 - chr3R 29462602 intron Ptp99A + chr3R_8_23080001 chr3R_23080001 ISO1-AS-Emb123 291 chr3R 16756294 16756346 chr3R 16762510 16762562 diver 53 6215 16.5 16.0 16.2 3.1 6268 chr3R 16756294 intron bxd - chr3R 16759428 intron bxd - chr3R 16762562 intron bxd - chr3R_53_16755001 chr3R_16755001 ISO1-AS-Emb123 292 chr3R 16794300 16794351 chr3R 16794640 16794691 54 342 112.5 107.0 109.8 0.5 391 chr3R 16794300 intergenic not near genes chr3R 16794496 intergenic not near genes chr3R 16794691 intergenic not near genes chr3R_54_16790001 chr3R_16790001 ISO1-AS-Emb123 293 chr3R 16877144 16877145 chr3R 25646611 25646612 4 8769467 98.0 84.0 91.0 0.0 8769468 chr3R 16877144 intron iab-8 - chr3R 21261878 intron ETHR + chr3R 25646612 intron jigr1 + chr3R_4_21260001 chr3R_21260001 ISO1-AS-Emb123 294 chr3R 17076985 17076986 chr3R 25646611 25646612 4 8569626 67.5 84.0 75.8 0.1 8569627 chr3R 17076985 intron Keap1 - chr3R 21361798 intron,3` UTR,exon mod(mdg4) -,pre-mod(mdg4)-T +,pre-mod(mdg4)-Z + chr3R 25646612 intron jigr1 + chr3R_4_21360001 chr3R_21360001 ISO1-AS-Emb123 295 chr3R 17388963 17389054 chr3R 21907534 21907535 5 4518517 69.0 69.0 69.0 0.1 4518572 chr3R 17388963 intron,exon Brf -,lute + chr3R 19648249 exon CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 ISO1-AS-Emb123 296 chr3R 4928458 4928459 chr3R 17471677 17471677 6 12543218 63.0 66.0 64.5 0.1 12543219 chr3R 4928458 intron Cdep + chr3R 11200068 intron cu + chr3R 17471677 intergenic not near genes chr3R_6_11200001 chr3R_11200001 ISO1-AS-Emb123 297 chr3R 17573845 17573845 chr3R 30562273 30562273 35 12988428 89.0 78.5 83.8 0.4 12988428 chr3R 17573845 intergenic not near genes chr3R 24068059 intron 4EHP - chr3R 30562273 intron tmod + chr3R_35_24065001 chr3R_24065001 ISO1-AS-Emb123 298 chr3R 16703533 16703535 chr3R 17643624 17643624 46 940090 91.0 64.0 77.5 0.6 940091 chr3R 16703533 intron Ubx - chr3R 17173578 intron Mur89F - chr3R 17643624 intron CG43175 + chr3R_46_17170001 chr3R_17170001 ISO1-AS-Emb123 299 chr3R 17705622 17705681 chr3R 17705763 17705822 73 139 17.5 22.0 19.8 3.5 200 chr3R 17705622 intron osa - chr3R 17705722 intron osa - chr3R 17705822 intron osa - chr3R_73_17705001 chr3R_17705001 ISO1-AS-Emb123 300 chr3R 20450688 20450689 chr3R 20628013 20628014 8 177325 68.5 80.0 74.2 0.1 177326 chr3R 20450688 intron Gfrl - chr3R 20539351 exon Stat92E - chr3R 20628014 3` UTR H + chr3R_8_20535001 chr3R_20535001 ISO1-AS-Emb123 301 chr3R 21141650 21141706 chr3R 21150156 21150212 Tirant 52 8503 8.5 15.5 12.0 4.0 8562 chr3R 21141650 intron SNF4Agamma + chr3R 21145931 intron SNF4Agamma + chr3R 21150212 intron SNF4Agamma + chr3R_52_21145001 chr3R_21145001 ISO1-AS-Emb123 302 chr3R 9620955 9620956 chr3R 21907534 21907534 4 12286578 92.0 69.0 80.5 0.0 12286579 chr3R 9620955 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 ISO1-AS-Emb123 303 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 69.0 69.0 69.0 0.1 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 ISO1-AS-Emb123 304 chr3R 21907534 21907534 chr3R 24389465 24389465 4 2481931 71.0 70.5 70.8 0.1 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 ISO1-AS-Emb123 305 chr3R 21907534 21907534 chr3R 28831801 28831802 31 6924268 71.0 66.5 68.8 0.4 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_31_25365001 chr3R_25365001 ISO1-AS-Emb123 306 chr3R 21907534 21907534 chr3R 29013339 29013340 4 7105806 71.0 80.5 75.8 0.1 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 ISO1-AS-Emb123 307 chr3R 8339247 8339247 chr3R 21907535 21907535 5 13568288 77.5 69.0 73.2 0.1 13568288 chr3R 8339247 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 ISO1-AS-Emb123 308 chr3R 9620955 9620956 chr3R 21907535 21907535 11 12286579 92.0 69.0 80.5 0.1 12286580 chr3R 9620955 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_11_15760001 chr3R_15760001 ISO1-AS-Emb123 309 chr3R 21907535 21907535 chr3R 28831801 28831802 49 6924266 71.0 66.5 68.8 0.7 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_49_25365001 chr3R_25365001 ISO1-AS-Emb123 310 chr3R 21907535 21907535 chr3R 29013339 29013340 6 7105804 71.0 80.5 75.8 0.1 7105805 chr3R 21907535 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_6_25460001 chr3R_25460001 ISO1-AS-Emb123 311 chr3R 9620956 9620957 chr3R 21907536 21907536 11 12286580 93.5 68.0 80.8 0.1 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_11_15760001 chr3R_15760001 ISO1-AS-Emb123 312 chr3R 21907536 21907536 chr3R 28831801 28831802 54 6924266 71.5 66.5 69.0 0.8 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_54_25365001 chr3R_25365001 ISO1-AS-Emb123 313 chr3R 21907536 21907536 chr3R 29013339 29013340 4 7105804 71.5 80.5 76.0 0.1 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 ISO1-AS-Emb123 314 chr3R 23153267 23153267 chr3R 26405955 26405956 57 3252688 88.5 73.0 80.8 0.7 3252689 chr3R 23153267 3` UTR unk - chr3R 24779612 intron CG42331 + chr3R 26405956 intergenic not near genes chr3R_57_24775001 chr3R_24775001 ISO1-AS-Emb123 315 chr3R 23153267 23153267 chr3R 30975659 30975659 5 7822392 88.5 80.0 84.2 0.1 7822392 chr3R 23153267 3` UTR unk - chr3R 27064463 intergenic Nep5 - chr3R 30975659 intron 5-HT7 - chr3R_5_27060001 chr3R_27060001 ISO1-AS-Emb123 316 chr3R 8745790 8745792 chr3R 23303855 23303855 114 14558063 71.5 78.5 75.0 1.5 14558065 chr3R 8745790 intron CG9801 - chr3R 16024822 intergenic not near genes chr3R 23303855 intron pnt - chr3R_114_16020001 chr3R_16020001 ISO1-AS-Emb123 317 chr3R 13062889 13062891 chr3R 23980372 23980372 4 10917482 79.0 95.0 87.0 0.0 10917483 chr3R 13062889 intron sim + chr3R 18521630 intron fru - chr3R 23980372 intron CG31140 + chr3R_4_18520001 chr3R_18520001 ISO1-AS-Emb123 318 chr3R 24076896 24076906 chr3R 24078388 24078398 hobo 10 1492 33.0 25.0 29.0 0.3 1502 chr3R 24076896 intron 4EHP - chr3R 24077647 intron 4EHP - chr3R 24078398 intron 4EHP - chr3R_10_24075001 chr3R_24075001 ISO1-AS-Emb123 319 chr3R 24076908 24076944 chr3R 24078387 24078436 hobo 55 1491 28.0 24.0 26.0 2.0 1528 chr3R 24076908 intron 4EHP - chr3R 24077672 intron 4EHP - chr3R 24078436 intron 4EHP - chr3R_55_24075001 chr3R_24075001 ISO1-AS-Emb123 320 chr3R 21907535 21907535 chr3R 24389465 24389465 6 2481930 71.0 70.5 70.8 0.1 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_6_23145001 chr3R_23145001 ISO1-AS-Emb123 321 chr3R 17357119 17357122 chr3R 24389957 24389960 9 7032838 62.5 59.0 60.8 0.1 7032841 chr3R 17357119 intron beat-IIa - chr3R 20873540 3` UTR TotC + chr3R 24389960 intron CG5768 - chr3R_9_20870001 chr3R_20870001 ISO1-AS-Emb123 322 chr3R 25126021 25126062 chr3R 25126640 25126681 13 619 81.0 91.0 86.0 0.1 660 chr3R 25126021 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126351 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126681 3` UTR,exon CG42503 -,Mocs2 - chr3R_13_25125001 chr3R_25125001 ISO1-AS-Emb123 323 chr3R 7615598 7615599 chr3R 25881694 25881695 4 18266096 76.0 74.0 75.0 0.1 18266097 chr3R 7615598 intron CG34127 - chr3R 16748646 intron bxd - chr3R 25881695 intergenic Tsp96F -,SppL + chr3R_4_16745001 chr3R_16745001 ISO1-AS-Emb123 324 chr3R 1311149 1311149 chr3R 26983903 26983903 6 25672754 85.5 76.0 80.8 0.1 25672754 chr3R 1311149 intergenic not near genes chr3R 14147526 intergenic not near genes chr3R 26983903 intron CG14253 + chr3R_6_14145001 chr3R_14145001 ISO1-AS-Emb123 325 chr3R 27342771 27342826 chr3R 27351377 27351432 Tirant 61 8604 16.5 17.5 17.0 3.4 8661 chr3R 27342771 intron CG42534 + chr3R 27347102 intron CG42534 + chr3R 27351432 intron CG42534 + chr3R_61_27345001 chr3R_27345001 ISO1-AS-Emb123 326 chr3R 2259918 2259919 chr3R 27402577 27402577 4 25142658 154.0 61.0 107.5 0.0 25142659 chr3R 2259918 intergenic not near genes chr3R 14831248 intron btsz - chr3R 27402577 intron side - chr3R_4_14830001 chr3R_14830001 ISO1-AS-Emb123 327 chr3R 27420984 27421005 chr3R 27421192 27421213 17 208 27.0 16.0 21.5 0.8 229 chr3R 27420984 intron side - chr3R 27421098 intron side - chr3R 27421213 intron side - chr3R_17_27420001 chr3R_27420001 ISO1-AS-Emb123 328 chr3R 27421010 27421039 chr3R 27421190 27421245 27 204 15.5 14.0 14.8 1.7 235 chr3R 27421010 intron side - chr3R 27421128 intron side - chr3R 27421245 intron side - chr3R_27_27420001 chr3R_27420001 ISO1-AS-Emb123 329 chr3R 27725547 27725590 chr3R 27731010 27731057 I-element 34 5467 26.5 14.0 20.2 1.6 5510 chr3R 27725547 intergenic not near genes chr3R 27728302 intergenic not near genes chr3R 27731057 intergenic not near genes chr3R_34_27725001 chr3R_27725001 ISO1-AS-Emb123 330 chr3R 28068474 28068523 chr3R 28073941 28073947 I-element 41 5466 20.5 17.5 19.0 2.0 5473 chr3R 28068474 intron CG34362 + chr3R 28071210 intron CG34362 + chr3R 28073947 intron CG34362 + chr3R_41_28070001 chr3R_28070001 ISO1-AS-Emb123 331 chr3R 28226993 28227046 chr3R 28228199 28228252 60 1206 12.0 16.5 14.2 3.9 1259 chr3R 28226993 intron CG34354 + chr3R 28227622 intron CG34354 + chr3R 28228252 intron CG34354 + chr3R_60_28225001 chr3R_28225001 ISO1-AS-Emb123 332 chr3R 25198239 25198240 chr3R 28339897 28339897 86 3141658 82.0 71.5 76.8 1.1 3141658 chr3R 25198239 intron Cad96Ca - chr3R 26769068 intergenic CR45563 + chr3R 28339897 intergenic Gfat2 -,Moca-cyp + chr3R_86_26765001 chr3R_26765001 ISO1-AS-Emb123 333 chr3R 21907534 21907536 chr3R 28831799 28831801 106 6924266 71.5 65.5 68.5 1.5 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_106_25365001 chr3R_25365001 ISO1-AS-Emb123 334 chr3R 21907534 21907536 chr3R 28831802 28831802 72 6924267 71.5 67.0 69.2 1.0 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_72_25365001 chr3R_25365001 ISO1-AS-Emb123 335 chr3R 21907534 21907534 chr3R 29013340 29013340 5 7105806 71.0 81.0 76.0 0.1 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 ISO1-AS-Emb123 336 chr3R 29013339 29013340 chr3R 29351537 29351537 4 338198 82.0 75.5 78.8 0.1 338198 chr3R 29013339 intron wat - chr3R 29182438 intron CG14509 - chr3R 29351537 intergenic not near genes chr3R_4_29180001 chr3R_29180001 ISO1-AS-Emb123 337 chr3R 29738240 29738295 chr3R 29739732 29739787 hobo 68 1491 21.0 14.0 17.5 3.7 1547 chr3R 29738240 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739787 5` UTR CG1969 + chr3R_68_29735001 chr3R_29735001 ISO1-AS-Emb123 338 chr3R 30084832 30084882 chr3R 30086321 30086374 hobo 35 1491 18.0 29.0 23.5 1.4 1542 chr3R 30084832 intron sima + chr3R 30085603 intron sima + chr3R 30086374 intron sima + chr3R_35_30085001 chr3R_30085001 ISO1-AS-Emb123 339 chr3R 24817241 24817241 chr3R 30851343 30851344 11 6034103 90.0 72.5 81.2 0.1 6034103 chr3R 24817241 intergenic Saf-B +,CG5808 - chr3R 27834292 5` UTR CG34353 - chr3R 30851344 intergenic not near genes chr3R_11_27830001 chr3R_27830001 ISO1-AS-Emb123 340 chr3R 31279351 31279406 chr3R 31285567 31285622 diver 63 6214 25.5 22.0 23.8 2.5 6271 chr3R 31279351 intergenic not near genes chr3R 31282486 intergenic not near genes chr3R 31285622 intergenic not near genes chr3R_63_31280001 chr3R_31280001 ISO1-AS-Emb123 341 chr3R 31691507 31691562 chr3R 31696297 31696353 Doc 37 4791 17.5 21.5 19.5 1.8 4846 chr3R 31691507 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696353 intergenic not near genes chr3R_37_31690001 chr3R_31690001 ISO1-AS-Emb123 342 chr4 671583 671629 chr4 680191 680237 Tirant 59 8608 22.5 24.5 23.5 2.4 8654 chr4 671583 intron CG11360 + chr4 675910 intron CG11360 + chr4 680237 intron CG11360 + chr4_59_675001 chr4_675001 ISO1-AS-Emb123 343 chrX 1053117 1053118 chrX 16983077 16983077 4 15929960 57.5 58.5 58.0 0.1 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_4_9015001 chrX_9015001 ISO1-AS-Emb123 344 chrX 1053119 1053123 chrX 16983076 16983077 4 15929956 59.0 59.0 59.0 0.1 15929958 chrX 1053119 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_4_9015001 chrX_9015001 ISO1-AS-Emb123 345 chrX 1627965 1627977 chrX 1635453 1635470 gtwin 17 7493 28.5 19.0 23.8 0.7 7505 chrX 1627965 intron,intron Mur2B -,br + chrX 1631718 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_17_1630001 chrX_1630001 ISO1-AS-Emb123 346 chrX 2912172 2912172 chrX 14985240 14985241 4 12073069 55.5 62.0 58.8 0.1 12073069 chrX 2912172 intron kirre + chrX 8948706 intron rdgA + chrX 14985241 intron eag + chrX_4_8945001 chrX_8945001 ISO1-AS-Emb123 347 chrX 3391353 3391353 chrX 12414134 12414134 5 9022781 74.0 52.0 63.0 0.1 9022781 chrX 3391353 intron,3` UTR,3` UTR CR44999 +,dm +,CG12535 - chrX 7902744 exon bys + chrX 12414134 intergenic not near genes chrX_5_7900001 chrX_7900001 ISO1-AS-Emb123 348 chrX 3752386 3752394 chrX 3764760 3764768 17.6 18 12374 57.0 61.5 59.2 0.3 12382 chrX 3752386 intron tlk + chrX 3758577 intron tlk + chrX 3764768 intron tlk + chrX_18_3755001 chrX_3755001 ISO1-AS-Emb123 349 chrX 3752395 3752399 chrX 3764752 3764773 17.6 8 12370 55.0 57.5 56.2 0.1 12378 chrX 3752395 intron tlk + chrX 3758584 intron tlk + chrX 3764773 intron tlk + chrX_8_3755001 chrX_3755001 ISO1-AS-Emb123 350 chrX 3765240 3765245 chrX 4343828 4343888 4 578618 60.0 70.0 65.0 0.1 578648 chrX 3765240 intron tlk + chrX 4054564 intergenic not near genes chrX 4343888 intron norpA + chrX_4_4050001 chrX_4050001 ISO1-AS-Emb123 351 chrX 4389377 4389380 chrX 12946233 12946235 6 8556856 66.5 61.5 64.0 0.1 8556858 chrX 4389377 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946235 3` UTR fne + chrX_6_8665001 chrX_8665001 ISO1-AS-Emb123 352 chrX 4486483 4486483 chrX 16074541 16074542 4 11588058 52.0 63.0 57.5 0.1 11588059 chrX 4486483 intron CR32773 - chrX 10280512 intron alpha-Man-I - chrX 16074542 intergenic Tob - chrX_4_10280001 chrX_10280001 ISO1-AS-Emb123 353 chrX 4545004 4545004 chrX 16734019 16734019 4 12189015 43.0 55.5 49.2 0.1 12189015 chrX 4545004 intron,3` UTR CR32773 -,Usf - chrX 10639512 intron X11Lbeta + chrX 16734019 intron CG9634 - chrX_4_10635001 chrX_10635001 ISO1-AS-Emb123 354 chrX 835612 835612 chrX 5772658 5772658 4 4937046 58.0 50.0 54.0 0.1 4937046 chrX 835612 intron CG43867 - chrX 3304135 intron dnc + chrX 5772658 intron CG42699 + chrX_4_3300001 chrX_3300001 ISO1-AS-Emb123 355 chrX 6335186 6335214 chrX 6337721 6337749 Tirant 5 2535 6.5 10.0 8.2 0.5 2563 chrX 6335186 intergenic not near genes chrX 6336468 intergenic not near genes chrX 6337749 intergenic CG3842 + chrX_5_6335001 chrX_6335001 ISO1-AS-Emb123 356 chrX 6335215 6335243 chrX 6337719 6337778 Tirant 21 2533 3.0 9.5 6.2 2.9 2563 chrX 6335215 intergenic not near genes chrX 6336496 intergenic not near genes chrX 6337778 5` UTR CG3842 + chrX_21_6335001 chrX_6335001 ISO1-AS-Emb123 357 chrX 6562795 6562841 chrX 6571302 6571348 Tirant 32 8506 8.0 13.0 10.5 2.8 8553 chrX 6562795 intron CG34417 + chrX 6567072 intron CG34417 + chrX 6571348 intron CG34417 + chrX_32_6565001 chrX_6565001 ISO1-AS-Emb123 358 chrX 6884816 6884817 chrX 12946234 12946235 6 6061418 54.0 62.0 58.0 0.1 6061419 chrX 6884816 intergenic not near genes chrX 9915526 intergenic not near genes chrX 12946235 3` UTR fne + chrX_6_9915001 chrX_9915001 ISO1-AS-Emb123 359 chrX 7293782 7293782 chrX 13057300 13057301 10 5763519 63.5 71.5 67.5 0.1 5763519 chrX 7293782 intron,intron CR44357 -,CG1677 - chrX 10175542 intron,intron CR44894 -,CG43902 + chrX 13057301 intron rad + chrX_10_10175001 chrX_10175001 ISO1-AS-Emb123 360 chrX 7602117 7602118 chrX 21177029 21177029 12 13574911 57.5 68.0 62.8 0.2 13574912 chrX 7602117 intergenic not near genes chrX 14389573 intron dpr8 + chrX 21177029 intergenic not near genes chrX_12_14385001 chrX_14385001 ISO1-AS-Emb123 361 chrX 8248419 8248432 chrX 16882515 16882528 4 8634096 78.0 55.0 66.5 0.1 8634109 chrX 8248419 intergenic ND75 -,Trxr-1 + chrX 12565474 5` UTR CG43921 - chrX 16882528 intron,3` UTR CG4872 +,CG9104 - chrX_4_12565001 chrX_12565001 ISO1-AS-Emb123 362 chrX 8810799 8810799 chrX 12946235 12946235 12 4135436 60.5 63.0 61.8 0.2 4135436 chrX 8810799 intergenic not near genes chrX 10878517 exon Ork1 - chrX 12946235 3` UTR fne + chrX_12_10875001 chrX_10875001 ISO1-AS-Emb123 363 chrX 10525047 10525076 chrX 10532125 10532158 297 22 7079 25.5 14.5 20.0 1.0 7111 chrX 10525047 intron spri - chrX 10528602 intron spri - chrX 10532158 intron spri - chrX_22_10525001 chrX_10525001 ISO1-AS-Emb123 364 chrX 10550831 10550882 chrX 10552323 10552374 hobo 33 1492 17.0 13.5 15.2 2.0 1543 chrX 10550831 intron spri - chrX 10551602 intron spri - chrX 10552374 intron spri - chrX_33_10550001 chrX_10550001 ISO1-AS-Emb123 365 chrX 10772659 10772695 chrX 10772767 10772803 Tirant 24 107 15.0 7.0 11.0 2.0 144 chrX 10772659 intron CG15211 + chrX 10772731 intron CG15211 + chrX 10772803 intron CG15211 + chrX_24_10770001 chrX_10770001 ISO1-AS-Emb123 366 chrX 11109417 11109417 chrX 12946233 12946235 5 1836817 74.5 61.5 68.0 0.1 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_5_12025001 chrX_12025001 ISO1-AS-Emb123 367 chrX 4617443 4617445 chrX 11400720 11400723 4 6783277 72.0 76.0 74.0 0.1 6783280 chrX 4617443 intergenic peb + chrX 8009083 intron Tbh + chrX 11400723 intron dlg1 + chrX_4_8005001 chrX_8005001 ISO1-AS-Emb123 368 chrX 11633391 11633403 chrX 11640470 11640482 297 8 7079 33.0 17.0 25.0 0.3 7091 chrX 11633391 intron Ptp10D + chrX 11636936 intron Ptp10D + chrX 11640482 intron Ptp10D + chrX_8_11635001 chrX_11635001 ISO1-AS-Emb123 369 chrX 11633407 11633444 chrX 11640469 11640523 297 33 7078 11.0 16.5 13.8 2.2 7116 chrX 11633407 intron Ptp10D + chrX 11636965 intron Ptp10D + chrX 11640523 intron Ptp10D + chrX_33_11635001 chrX_11635001 ISO1-AS-Emb123 370 chrX 12414134 12414134 chrX 13925251 13925251 9 1511117 52.5 51.0 51.8 0.2 1511117 chrX 12414134 intergenic not near genes chrX 13169692 intron CG34411 - chrX 13925251 intron mamo - chrX_9_13165001 chrX_13165001 ISO1-AS-Emb123 371 chrX 4389379 4389380 chrX 12946233 12946233 4 8556854 66.5 61.5 64.0 0.1 8556854 chrX 4389379 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946233 3` UTR fne + chrX_4_8665001 chrX_8665001 ISO1-AS-Emb123 372 chrX 8810798 8810799 chrX 12946233 12946233 4 4135434 60.5 61.5 61.0 0.1 4135435 chrX 8810798 intergenic not near genes chrX 10878516 exon Ork1 - chrX 12946233 3` UTR fne + chrX_4_10875001 chrX_10875001 ISO1-AS-Emb123 373 chrX 11109417 11109417 chrX 12946233 12946233 24 1836816 74.5 61.5 68.0 0.3 1836816 chrX 11109417 intron Hsp60 + chrX 12027825 exon Usp7 - chrX 12946233 3` UTR fne + chrX_24_12025001 chrX_12025001 ISO1-AS-Emb123 374 chrX 8810797 8810799 chrX 12946234 12946234 18 4135435 60.5 62.0 61.2 0.3 4135437 chrX 8810797 intergenic not near genes chrX 10878516 exon Ork1 - chrX 12946234 3` UTR fne + chrX_18_10875001 chrX_10875001 ISO1-AS-Emb123 375 chrX 11109417 11109417 chrX 12946234 12946234 27 1836817 74.5 62.0 68.2 0.4 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_27_12025001 chrX_12025001 ISO1-AS-Emb123 376 chrX 12946234 12946234 chrX 16632148 16632149 11 3685915 62.0 38.5 50.2 0.2 3685915 chrX 12946234 3` UTR fne + chrX 14789192 3` UTR rut - chrX 16632149 intron,5` UTR Rok -,CG9777 - chrX_11_14785001 chrX_14785001 ISO1-AS-Emb123 377 chrX 12946234 12946234 chrX 18572524 18572525 5 5626291 62.0 88.0 75.0 0.1 5626291 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572525 intergenic not near genes chrX_5_15755001 chrX_15755001 ISO1-AS-Emb123 378 chrX 8810799 8810799 chrX 12946235 12946235 4 4135436 60.5 63.0 61.8 0.1 4135436 chrX 8810799 intergenic not near genes chrX 10878517 exon Ork1 - chrX 12946235 3` UTR fne + chrX_4_10875001 chrX_10875001 ISO1-AS-Emb123 379 chrX 9224225 9224225 chrX 12946235 12946235 4 3722010 66.5 63.0 64.8 0.1 3722010 chrX 9224225 intergenic not near genes chrX 11085230 intron sev - chrX 12946235 3` UTR fne + chrX_4_11085001 chrX_11085001 ISO1-AS-Emb123 380 chrX 11109417 11109417 chrX 12946235 12946235 23 1836818 74.5 63.0 68.8 0.3 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_23_12025001 chrX_12025001 ISO1-AS-Emb123 381 chrX 12946235 12946235 chrX 16632148 16632149 13 3685914 62.0 38.5 50.2 0.3 3685914 chrX 12946235 3` UTR fne + chrX 14789192 3` UTR rut - chrX 16632149 intron,5` UTR Rok -,CG9777 - chrX_13_14785001 chrX_14785001 ISO1-AS-Emb123 382 chrX 12946235 12946235 chrX 18572524 18572526 8 5626290 62.0 88.0 75.0 0.1 5626291 chrX 12946235 3` UTR fne + chrX 15759380 intron Graf - chrX 18572526 intergenic not near genes chrX_8_15755001 chrX_15755001 ISO1-AS-Emb123 383 chrX 12946235 12946235 chrX 19741474 19741474 roo 4 6795239 62.0 52.5 57.2 0.1 6795239 chrX 12946235 3` UTR fne + chrX 16343854 intergenic not near genes chrX 19741474 intron,3` UTR CoVIb -,CG18809 - chrX_4_16340001 chrX_16340001 ISO1-AS-Emb123 384 chrX 13937953 13937998 chrX 13941249 13941294 I-element 34 3295 11.5 11.0 11.2 2.8 3341 chrX 13937953 intron mamo - chrX 13939624 intron mamo - chrX 13941294 intron mamo - chrX_34_13935001 chrX_13935001 ISO1-AS-Emb123 385 chrX 3340268 3340269 chrX 14180199 14180199 4 10839930 61.5 40.5 51.0 0.1 10839931 chrX 3340268 3` UTR,intron dnc +,CR44886 - chrX 8760234 intron Lim1 - chrX 14180199 intergenic not near genes chrX_4_8760001 chrX_8760001 ISO1-AS-Emb123 386 chrX 2912171 2912174 chrX 14985241 14985244 4 12073070 55.5 61.5 58.5 0.1 12073073 chrX 2912171 intron kirre + chrX 8948708 intron rdgA + chrX 14985244 intron eag + chrX_4_8945001 chrX_8945001 ISO1-AS-Emb123 387 chrX 15326710 15326716 chrX 15326933 15326939 I-element 9 223 12.0 9.0 10.5 0.8 229 chrX 15326710 3` UTR Top1 + chrX 15326824 3` UTR Top1 + chrX 15326939 3` UTR Top1 + chrX_9_15325001 chrX_15325001 ISO1-AS-Emb123 388 chrX 4275590 4275590 chrX 15627327 15627327 4 11351737 63.0 67.5 65.2 0.1 11351737 chrX 4275590 3` UTR CR45483 - chrX 9951458 intergenic not near genes chrX 15627327 intron sog - chrX_4_9950001 chrX_9950001 ISO1-AS-Emb123 389 chrX 15627327 15627327 chrX 16835733 16835733 5 1208406 73.5 62.5 68.0 0.1 1208406 chrX 15627327 intron sog - chrX 16231530 intergenic not near genes chrX 16835733 intergenic CG13004 - chrX_5_16230001 chrX_16230001 ISO1-AS-Emb123 390 chrX 3391353 3391359 chrX 16585825 16585825 9 13194469 76.5 59.5 68.0 0.1 13194472 chrX 3391353 intron,3` UTR,3` UTR CR44999 +,dm +,CG12535 - chrX 9988589 intergenic not near genes chrX 16585825 intron CanA-14F - chrX_9_9985001 chrX_9985001 ISO1-AS-Emb123 391 chrX 1053118 1053123 chrX 16983076 16983076 8 15929956 59.0 59.0 59.0 0.1 15929958 chrX 1053118 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_8_9015001 chrX_9015001 ISO1-AS-Emb123 392 chrX 1053117 1053123 chrX 16983077 16983077 12 15929958 59.0 58.5 58.8 0.2 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_12_9015001 chrX_9015001 ISO1-AS-Emb123 393 chrX 12946233 12946235 chrX 18572525 18572525 8 5626291 62.0 87.5 74.8 0.1 5626292 chrX 12946233 3` UTR fne + chrX 15759379 intron Graf - chrX 18572525 intergenic not near genes chrX_8_15755001 chrX_15755001 ISO1-AS-Emb123 394 chrX 1715968 1715989 chrX 18775585 18775622 5 17059620 44.5 67.5 56.0 0.1 17059654 chrX 1715968 intergenic not near genes chrX 10245795 intron Hk - chrX 18775622 exon CG6891 + chrX_5_10245001 chrX_10245001 ISO1-AS-Emb123 395 chrX 12946232 12946235 chrX 19741474 19741474 roo 5 6795241 62.0 52.5 57.2 0.1 6795242 chrX 12946232 3` UTR fne + chrX 16343853 intergenic not near genes chrX 19741474 intron,3` UTR CoVIb -,CG18809 - chrX_5_16340001 chrX_16340001 ISO1-AS-Emb123 396 chrX 12946233 12946235 chrX 19741476 19741476 roo 7 6795242 62.0 52.0 57.0 0.1 6795243 chrX 12946233 3` UTR fne + chrX 16343854 intergenic not near genes chrX 19741476 intron,3` UTR CoVIb -,CG18809 - chrX_7_16340001 chrX_16340001 ISO1-AS-Emb123 397 chrX 19744604 19744658 chrX 19744755 19744809 8 151 55.5 48.5 52.0 0.2 205 chrX 19744604 5` UTR,exon CG33932 +,Rpp20 + chrX 19744706 intron,intron CG33932 +,Rpp20 + chrX 19744809 5` UTR,exon CG33932 +,Rpp20 + chrX_8_19740001 chrX_19740001 ISO1-AS-Emb123 398 chrX 20377325 20377341 chrX 20378817 20378833 hobo 15 1491 20.0 27.5 23.8 0.6 1508 chrX 20377325 intergenic not near genes chrX 20378079 intergenic not near genes chrX 20378833 intergenic not near genes chrX_15_20375001 chrX_20375001 ISO1-AS-Emb123 399 chrX 20940699 20940743 chrX 20942193 20942234 hobo 25 1494 7.0 19.5 13.2 1.8 1535 chrX 20940699 intergenic not near genes chrX 20941466 intergenic not near genes chrX 20942234 intergenic not near genes chrX_25_20940001 chrX_20940001 ISO1-AS-Emb123 400 chrX 20956968 20957009 chrX 20962435 20962476 I-element 29 5466 18.0 16.0 17.0 1.6 5508 chrX 20956968 intergenic not near genes chrX 20959722 intergenic not near genes chrX 20962476 intergenic Ser6 - chrX_29_20955001 chrX_20955001 ISO1-AS-Emb123 401 chrX 21961293 21961342 chrX 21961540 21961587 9 245 62.0 48.5 55.2 0.2 294 chrX 21961293 intergenic not near genes chrX 21961440 intergenic not near genes chrX 21961587 intergenic not near genes chrX_9_21960001 chrX_21960001 ISO1-AS-Emb123 402 chrX 22259779 22259788 chrX 22260225 22260226 rover 10 445 365.0 39.5 202.2 0.0 447 chrX 22259779 intergenic not near genes chrX 22260002 intergenic not near genes chrX 22260226 intergenic not near genes chrX_10_22260001 chrX_22260001 ISO1-AS-Emb123 403 chrX 22426586 22426591 chrX 23184381 23184386 4 757795 88.5 60.0 74.2 0.1 757800 chrX 22426586 intergenic not near genes chrX 22805486 intergenic not near genes chrX 23184386 intergenic not near genes chrX_4_22805001 chrX_22805001 ISO1-AS-Emb123 404 chrY 83068 83084 chrY 83232 83248 6 164 7.0 5.5 6.2 0.8 180 chrY 83068 intron kl-5 - chrY 83158 intron kl-5 - chrY 83248 intron kl-5 - chrY_6_80001 chrY_80001 ISO1-AS-Emb123 405 chrY 104705 104717 chrY 104836 104848 14 130 20.5 30.5 25.5 0.5 143 chrY 104705 intron kl-5 - chrY 104776 intron kl-5 - chrY 104848 intron kl-5 - chrY_14_100001 chrY_100001 ISO1-AS-Emb123 406 chrY 380965 380969 chrY 381071 381071 5 106 27.0 25.5 26.2 0.2 106 chrY 380965 intergenic not near genes chrY 381018 intergenic not near genes chrY 381071 intergenic not near genes chrY_5_380001 chrY_380001 ISO1-AS-Emb123 407 chrY 380970 380975 chrY 381070 381077 8 105 26.5 26.5 26.5 0.3 107 chrY 380970 intergenic not near genes chrY 381024 intergenic not near genes chrY 381077 intergenic not near genes chrY_8_380001 chrY_380001 ISO1-AS-Emb123 408 chrY 380978 380987 chrY 1322825 1322833 8 941846 27.5 0.0 13.8 0.5 941855 chrY 380978 intergenic not near genes chrY 851906 intergenic not near genes chrY 1322833 intergenic not near genes chrY_8_850001 chrY_850001 ISO1-AS-Emb123 409 chrY 628836 628848 chrY 629260 629272 9 424 20.0 31.5 25.8 0.3 436 chrY 628836 intron kl-2 + chrY 629054 intron kl-2 + chrY 629272 intron kl-2 + chrY_9_625001 chrY_625001 ISO1-AS-Emb123 410 chrY 655929 655965 chrY 656130 656166 9 201 7.0 7.0 7.0 1.1 237 chrY 655929 intron kl-2 + chrY 656048 intron kl-2 + chrY 656166 exon kl-2 + chrY_9_655001 chrY_655001 ISO1-AS-Emb123 411 chrY 833100 833119 chrY 833201 833220 6 100 27.0 17.5 22.2 0.3 120 chrY 833100 intergenic not near genes chrY 833160 intergenic not near genes chrY 833220 intergenic not near genes chrY_6_830001 chrY_830001 ISO1-AS-Emb123 412 chrY 864693 864738 chrY 864793 864839 53 101 276.5 280.0 278.2 0.2 146 chrY 864693 intergenic not near genes chrY 864766 intergenic not near genes chrY 864839 intergenic not near genes chrY_53_860001 chrY_860001 ISO1-AS-Emb123 413 chrY 975591 975594 chrY 975733 975736 5 252 476.0 735.0 605.5 0.0 145 chrY 975591 intergenic not near genes chrY 975664 intergenic not near genes chrY 975736 intergenic not near genes chrY_5_975001 chrY_975001 ISO1-AS-Emb123 414 chrY 975595 975608 chrY 975726 976009 13 244 540.0 733.0 636.5 0.0 414 chrY 975595 intergenic not near genes chrY 975802 intergenic not near genes chrY 976009 intergenic not near genes chrY_13_975001 chrY_975001 ISO1-AS-Emb123 415 chrY 975620 975620 chrY 976034 976034 4 414 588.0 433.5 510.8 0.0 414 chrY 975620 intergenic not near genes chrY 975827 intergenic not near genes chrY 976034 intergenic not near genes chrY_4_975001 chrY_975001 ISO1-AS-Emb123 416 chrY 975643 975663 chrY 975761 975928 10 250 662.5 744.5 703.5 0.0 285 chrY 975643 intergenic not near genes chrY 975786 intergenic not near genes chrY 975928 intergenic not near genes chrY_10_975001 chrY_975001 ISO1-AS-Emb123 417 chrY 975773 975807 chrY 975871 975912 43 108 818.5 976.5 897.5 0.0 139 chrY 975773 intergenic not near genes chrY 975842 intergenic not near genes chrY 975912 intergenic not near genes chrY_43_975001 chrY_975001 ISO1-AS-Emb123 418 chrY 975808 975823 chrY 975883 975955 23 142 867.5 998.5 933.0 0.0 147 chrY 975808 intergenic not near genes chrY 975882 intergenic not near genes chrY 975955 intergenic not near genes chrY_23_975001 chrY_975001 ISO1-AS-Emb123 419 chrY 1419877 1419914 chrY 1420156 1420191 43 278 77.0 59.5 68.2 0.6 314 chrY 1419877 intergenic not near genes chrY 1420034 intergenic not near genes chrY 1420191 intergenic not near genes chrY_43_1420001 chrY_1420001 ISO1-AS-Emb123 420 chrY 1420638 1420640 chrY 1420739 1420741 4 101 51.0 77.5 64.2 0.1 103 chrY 1420638 intergenic not near genes chrY 1420690 intergenic not near genes chrY 1420741 intergenic not near genes chrY_4_1420001 chrY_1420001 ISO1-AS-Emb123 421 chrY 1420644 1420651 chrY 1420737 1420752 8 100 50.5 77.0 63.8 0.1 108 chrY 1420644 intergenic not near genes chrY 1420698 intergenic not near genes chrY 1420752 intergenic not near genes chrY_8_1420001 chrY_1420001 ISO1-AS-Emb123 422 chrY 1420499 1420638 chrY 1420754 1420778 30 135 50.5 76.0 63.2 0.5 279 chrY 1420499 intergenic not near genes chrY 1420638 intergenic not near genes chrY 1420778 intergenic not near genes chrY_30_1420001 chrY_1420001 ISO1-AS-Emb123 423 chrY 1420983 1420996 chrY 1421887 1421900 12 904 58.5 31.5 45.0 0.3 917 chrY 1420983 intergenic not near genes chrY 1421442 intergenic not near genes chrY 1421900 intergenic not near genes chrY_12_1420001 chrY_1420001 ISO1-AS-Emb123 424 chrY 1420438 1420442 chrY 1421896 1421900 7 1458 68.0 33.5 50.8 0.1 1462 chrY 1420438 intergenic not near genes chrY 1421169 intergenic not near genes chrY 1421900 intergenic not near genes chrY_7_1420001 chrY_1420001 ISO1-AS-Emb123 425 chrY 1431368 1431373 chrY 1447396 1447434 Doc 8 16057 28.0 92.5 60.2 0.1 16066 chrY 1431368 intergenic not near genes chrY 1439401 intergenic not near genes chrY 1447434 intergenic not near genes chrY_8_1435001 chrY_1435001 ISO1-AS-Emb123 426 chrY 1420796 1420798 chrY 1448123 1448125 4 27327 71.5 48.5 60.0 0.1 27329 chrY 1420796 intergenic not near genes chrY 1434460 intergenic not near genes chrY 1448125 intergenic not near genes chrY_4_1430001 chrY_1430001 ISO1-AS-Emb123 427 chrY 2761639 2761651 chrY 2761912 2761924 7 273 23.5 18.0 20.8 0.3 285 chrY 2761639 intergenic not near genes chrY 2761782 intergenic not near genes chrY 2761924 intergenic not near genes chrY_7_2760001 chrY_2760001 ISO1-AS-Emb123 428 chrY 3561994 3562029 chrY 3562102 3562136 10 106 27.0 28.0 27.5 0.4 142 chrY 3561994 intergenic not near genes chrY 3562065 intergenic not near genes chrY 3562136 intergenic not near genes chrY_10_3560001 chrY_3560001 ISO1-AS-Emb123 429 chrY 3664577 3664626 chrY 3664705 3664754 17 126 6.5 4.5 5.5 2.6 177 chrY 3664577 intergenic CG40948 + chrY 3664666 intergenic CG40948 + chrY 3664754 intergenic CG40948 + chrY_17_3660001 chrY_3660001 ISO1-AS-Emb123 430 chrY 3664963 3665016 chrY 3665092 3665145 11 129 2.0 3.0 2.5 3.1 182 chrY 3664963 intergenic CG40948 + chrY 3665054 intergenic CG40948 + chrY 3665145 intergenic not near genes chrY_11_3665001 chrY_3665001 ISO1-AS-Emb123 431 chrY 3666415 3666461 chrY 3666593 3666639 5 178 1.0 4.5 2.8 1.3 224 chrY 3666415 intergenic not near genes chrY 3666527 intergenic not near genes chrY 3666639 intergenic not near genes chrY_5_3665001 chrY_3665001 ISO1-AS-Emb123