SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
5	chr2L	976815	976905	chr2L	984526	984616	roo	5	7711	6.5	10.0	8.2	0.5	7801	chr2L	976815	intergenic	not near genes	chr2L	980716	intergenic	not near genes	chr2L	984616	intergenic	not near genes	chr2L_5_980001	chr2L_980001	CanS-SH
6	chr2L	996663	996699	chr2L	1005833	1005869	roo	13	9170	16.0	9.5	12.8	0.9	9206	chr2L	996663	intergenic	not near genes	chr2L	1001266	intergenic	not near genes	chr2L	1005869	intergenic	not near genes	chr2L_13_1000001	chr2L_1000001	CanS-SH
15	chr2L	1220071	1220105	chr2L	1227612	1227646	blood	18	7541	11.5	9.0	10.2	1.6	7575	chr2L	1220071	intron	CG42329 +	chr2L	1223858	intron	CG42329 +	chr2L	1227646	intron	CG42329 +	chr2L_18_1220001	chr2L_1220001	CanS-SH
20	chr2L	1570633	1570653	chr2L	1573580	1573600	F-element	4	2947	17.5	9.0	13.2	0.3	2967	chr2L	1570633	intron	haf +	chr2L	1572116	intron	haf +	chr2L	1573600	intron	haf +	chr2L_4_1570001	chr2L_1570001	CanS-SH
21	chr2L	1618197	1618211	chr2L	1618602	1618616	jockey	4	405	8.5	3.0	5.8	0.6	419	chr2L	1618197	intergenic	CR44603 -	chr2L	1618406	intergenic	CR44603 -	chr2L	1618616	intergenic	CR44603 -	chr2L_4_1615001	chr2L_1615001	CanS-SH
24	chr2L	1678901	1678938	chr2L	1686459	1686496	blood	6	7558	9.0	7.5	8.2	0.7	7595	chr2L	1678901	intron	chinmo +	chr2L	1682698	intron	chinmo +	chr2L	1686496	intron	chinmo +	chr2L_6_1680001	chr2L_1680001	CanS-SH
25	chr2L	1711304	1711335	chr2L	1711703	1711734	mdg3	13	399	13.5	12.0	12.8	0.9	430	chr2L	1711304	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711519	3` UTR	frtz -	chr2L	1711734	3` UTR	frtz -	chr2L_13_1710001	chr2L_1710001	CanS-SH
35	chr2L	2100300	2100312	chr2L	2109533	2109545	roo	6	9233	23.0	9.0	16.0	0.4	9245	chr2L	2100300	intron	dpr3 -	chr2L	2104922	intron	dpr3 -	chr2L	2109545	intron	dpr3 -	chr2L_6_2100001	chr2L_2100001	CanS-SH
36	chr2L	2112048	2112086	chr2L	2119785	2119823	opus	13	7737	8.0	8.5	8.2	1.4	7775	chr2L	2112048	intergenic	not near genes	chr2L	2115936	intergenic	not near genes	chr2L	2119823	intergenic	not near genes	chr2L_13_2115001	chr2L_2115001	CanS-SH
41	chr2L	2293992	2294063	chr2L	2299272	2299343	copia	10	5280	5.5	2.0	3.8	2.1	5351	chr2L	2293992	intergenic	not near genes	chr2L	2296668	intergenic	not near genes	chr2L	2299343	intergenic	not near genes	chr2L_10_2295001	chr2L_2295001	CanS-SH
47	chr2L	2565484	2565517	chr2L	2571627	2571660	297	13	6143	10.5	14.5	12.5	1.0	6176	chr2L	2565484	exon	Cyp309a2 -	chr2L	2568572	intron	Cyp309a2 -	chr2L	2571660	exon	Cyp309a2 -	chr2L_13_2565001	chr2L_2565001	CanS-SH
48	chr2L	2661141	2661162	chr2L	2663054	2663075	I-element	4	1913	10.0	6.0	8.0	0.4	1934	chr2L	2661141	intergenic	not near genes	chr2L	2662108	intergenic	not near genes	chr2L	2663075	intergenic	not near genes	chr2L_4_2660001	chr2L_2660001	CanS-SH
55	chr2L	3072971	3073009	chr2L	3078249	3078287	copia	8	5278	22.0	5.5	13.8	0.5	5316	chr2L	3072971	intron	toc -	chr2L	3075629	intron	toc -	chr2L	3078287	intron	toc -	chr2L_8_3075001	chr2L_3075001	CanS-SH
63	chr2L	3202674	3202772	chr2L	3210178	3210259	mdg1	21	7501	4.0	0.0	2.0	7.0	7585	chr2L	3202674	intergenic	not near genes	chr2L	3206466	intergenic	not near genes	chr2L	3210259	intergenic	CR45336 +	chr2L_21_3205001	chr2L_3205001	CanS-SH
71	chr2L	3388538	3388580	chr2L	3388854	3388896	pogo	18	316	13.5	9.5	11.5	1.4	358	chr2L	3388538	intergenic	CG42460 -	chr2L	3388717	intergenic	CG42460 -	chr2L	3388896	intergenic	CG42460 -,CR44791 +	chr2L_18_3385001	chr2L_3385001	CanS-SH
80	chr2L	3649719	3649806	chr2L	3654990	3655083	copia	7	5276	5.0	4.5	4.8	1.2	5364	chr2L	3649719	intron	for -	chr2L	3652401	intron	for -	chr2L	3655083	intron	for -	chr2L_7_3650001	chr2L_3650001	CanS-SH
93	chr2L	4065985	4066012	chr2L	4068885	4068912	Juan	4	2900	11.5	16.0	13.8	0.3	2927	chr2L	4065985	intron	ed +	chr2L	4067448	intron	ed +	chr2L	4068912	intron	ed +	chr2L_4_4065001	chr2L_4065001	CanS-SH
103	chr2L	4601640	4601678	chr2L	4609156	4609194	mdg1	13	7516	10.0	4.0	7.0	1.6	7554	chr2L	4601640	intron	dp -	chr2L	4605417	intron	dp -	chr2L	4609194	intron	dp -	chr2L_13_4605001	chr2L_4605001	CanS-SH
104	chr2L	4661773	4661797	chr2L	4669428	4669452	opus	11	7655	16.5	9.5	13.0	0.8	7679	chr2L	4661773	intergenic	not near genes	chr2L	4665612	intergenic	not near genes	chr2L	4669452	intergenic	not near genes	chr2L_11_4665001	chr2L_4665001	CanS-SH
110	chr2L	4918106	4918162	chr2L	4923254	4923348	jockey	8	5172	9.0	0.0	4.5	1.5	5242	chr2L	4918106	intron	hoe1 -	chr2L	4920727	intron	hoe1 -	chr2L	4923348	intron	hoe1 -	chr2L_8_4920001	chr2L_4920001	CanS-SH
119	chr2L	5342708	5342747	chr2L	5345163	5345202	Doc	12	2455	15.0	10.0	12.5	0.9	2494	chr2L	5342708	intergenic	CG12512 -	chr2L	5343955	intergenic	not near genes	chr2L	5345202	intergenic	not near genes	chr2L_12_5340001	chr2L_5340001	CanS-SH
134	chr2L	5827655	5827684	chr2L	5836738	5836767	roo	12	9083	19.0	8.0	13.5	0.8	9112	chr2L	5827655	intron	TrissinR +	chr2L	5832211	intron	TrissinR +	chr2L	5836767	intron	TrissinR +	chr2L_12_5830001	chr2L_5830001	CanS-SH
155	chr2L	6279576	6279643	chr2L	6279730	6279797	INE-1	21	154	12.0	7.0	9.5	2.0	221	chr2L	6279576	intron	Ddr +	chr2L	6279686	intron	Ddr +	chr2L	6279797	intron	Ddr +	chr2L_21_6275001	chr2L_6275001	CanS-SH
159	chr2L	6876718	6876747	chr2L	6882984	6883013	diver	6	6266	13.5	4.0	8.8	0.6	6295	chr2L	6876718	intron	Nlg2 +	chr2L	6879866	intron	Nlg2 +	chr2L	6883013	intron	Nlg2 +	chr2L_6_6875001	chr2L_6875001	CanS-SH
161	chr2L	6991371	6991402	chr2L	6998565	6998596	HMS-Beagle	7	7194	24.5	3.0	13.8	0.5	7225	chr2L	6991371	intron	uif -	chr2L	6994984	intron	uif -	chr2L	6998596	intron	uif -	chr2L_7_6990001	chr2L_6990001	CanS-SH
171	chr2L	7343275	7343303	chr2L	7350466	7350494	roo	12	7191	11.5	13.0	12.2	0.9	7219	chr2L	7343275	intron	Wnt6 +	chr2L	7346884	intron	Wnt6 +	chr2L	7350494	intron	Wnt6 +	chr2L_12_7345001	chr2L_7345001	CanS-SH
178	chr2L	7548041	7548057	chr2L	7550556	7550572	Burdock	6	2515	14.5	11.0	12.8	0.4	2531	chr2L	7548041	intron	RapGAP1 -	chr2L	7549306	intron	RapGAP1 -	chr2L	7550572	intron	RapGAP1 -	chr2L_6_7545001	chr2L_7545001	CanS-SH
193	chr2L	7958977	7959073	chr2L	7960463	7960561	pogo	15	1487	6.0	4.5	5.2	2.4	1584	chr2L	7958977	intron	Snoo -	chr2L	7959769	intron	Snoo -	chr2L	7960561	intron	Snoo -	chr2L_15_7955001	chr2L_7955001	CanS-SH
195	chr2L	7977027	7977065	chr2L	7984078	7984114	297	15	7051	10.5	10.5	10.5	1.3	7087	chr2L	7977027	intron	Snoo -	chr2L	7980570	intron	Snoo -	chr2L	7984114	intron,5` UTR	Snoo -,CG7231 +	chr2L_15_7980001	chr2L_7980001	CanS-SH
199	chr2L	8013597	8013617	chr2L	8023607	8023627	copia	5	10010	9.0	11.0	10.0	0.5	10030	chr2L	8013597	intron	Tg +	chr2L	8018612	intron	Tg +	chr2L	8023627	intron	Tg +	chr2L_5_8015001	chr2L_8015001	CanS-SH
208	chr2L	8452366	8452390	chr2L	8461612	8461636	roo	10	9246	7.5	14.0	10.8	0.8	9270	chr2L	8452366	intron	fu12 -	chr2L	8457001	intron	fu12 -	chr2L	8461636	intron	fu12 -	chr2L_10_8455001	chr2L_8455001	CanS-SH
210	chr2L	8594405	8594436	chr2L	8601534	8601565	297	8	7129	14.0	8.0	11.0	0.7	7160	chr2L	8594405	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8597985	intron	Sema-1a +	chr2L	8601565	intron	Sema-1a +	chr2L_8_8595001	chr2L_8595001	CanS-SH
213	chr2L	8723050	8723091	chr2L	8731502	8731543	Tirant	10	8452	12.0	7.5	9.8	0.9	8493	chr2L	8723050	intron	raw -	chr2L	8727296	intron	raw -	chr2L	8731543	intron	raw -	chr2L_10_8725001	chr2L_8725001	CanS-SH
224	chr2L	9000251	9000313	chr2L	9007836	9007906	roo	13	7590	8.5	2.0	5.2	2.1	7655	chr2L	9000251	intergenic	Try29F +	chr2L	9004078	intergenic	not near genes	chr2L	9007906	intergenic	not near genes	chr2L_13_9000001	chr2L_9000001	CanS-SH
235	chr2L	9217918	9217953	chr2L	9222780	9222823	Doc	5	4865	15.5	3.0	9.2	0.5	4905	chr2L	9217918	intron	tai +	chr2L	9220370	intron	tai +	chr2L	9222823	intron	tai +	chr2L_5_9220001	chr2L_9220001	CanS-SH
251	chr2L	9393437	9393470	chr2L	9396479	9396512	jockey	13	3042	10.5	9.0	9.8	1.2	3075	chr2L	9393437	intron	Shawl -	chr2L	9394974	intron	Shawl -	chr2L	9396512	intron	Shawl -	chr2L_13_9390001	chr2L_9390001	CanS-SH
265	chr2L	9973671	9973705	chr2L	9980865	9980899	HMS-Beagle	9	7194	9.0	11.0	10.0	0.8	7228	chr2L	9973671	intergenic	not near genes	chr2L	9977285	intergenic	not near genes	chr2L	9980899	intergenic	not near genes	chr2L_9_9975001	chr2L_9975001	CanS-SH
270	chr2L	10156258	10156297	chr2L	10163803	10163842	blood	10	7545	15.0	7.5	11.2	0.8	7584	chr2L	10156258	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160050	intron	CG44153 -	chr2L	10163842	intron	CG44153 -	chr2L_10_10160001	chr2L_10160001	CanS-SH
282	chr2L	10592777	10592866	chr2L	10600513	10600603	opus	9	7736	2.5	5.0	3.8	1.9	7826	chr2L	10592777	intron	Trim9 +	chr2L	10596690	intron	Trim9 +	chr2L	10600603	intron	Trim9 +	chr2L_9_10595001	chr2L_10595001	CanS-SH
289	chr2L	10862784	10862808	chr2L	10864474	10864498	Rt1c	7	1690	16.0	7.5	11.8	0.5	1714	chr2L	10862784	intron	CR43807 -	chr2L	10863641	intron	CR43807 -	chr2L	10864498	3` UTR	CR43807 -	chr2L_7_10860001	chr2L_10860001	CanS-SH
290	chr2L	10876497	10876530	chr2L	10883632	10883665	297	7	7135	14.0	3.0	8.5	0.7	7168	chr2L	10876497	intergenic	not near genes	chr2L	10880081	intergenic	not near genes	chr2L	10883665	intergenic	not near genes	chr2L_7_10880001	chr2L_10880001	CanS-SH
293	chr2L	10946892	10946916	chr2L	10956182	10956206	roo	7	9290	15.0	15.5	15.2	0.4	9314	chr2L	10946892	intron	dpr2 -	chr2L	10951549	intron	dpr2 -	chr2L	10956206	intron	dpr2 -	chr2L_7_10950001	chr2L_10950001	CanS-SH
298	chr2L	11215085	11215101	chr2L	11218750	11218766	Doc	6	3665	11.0	6.5	8.8	0.6	3681	chr2L	11215085	intron	ab +	chr2L	11216926	intron	ab +	chr2L	11218766	intron	ab +	chr2L_6_11215001	chr2L_11215001	CanS-SH
301	chr2L	11315195	11315271	chr2L	11317674	11317750	G2	20	2479	9.0	9.0	9.0	2.0	2555	chr2L	11315195	intergenic	not near genes	chr2L	11316472	intergenic	not near genes	chr2L	11317750	intergenic	not near genes	chr2L_20_11315001	chr2L_11315001	CanS-SH
303	chr2L	12067271	12067308	chr2L	12074398	12074435	297	17	7127	17.5	8.0	12.8	1.2	7164	chr2L	12067271	intergenic	CG14946 -	chr2L	12070853	intergenic	not near genes	chr2L	12074435	intergenic	not near genes	chr2L_17_12070001	chr2L_12070001	CanS-SH
319	chr2L	12558264	12558296	chr2L	12565468	12565500	HMS-Beagle	9	7204	18.5	9.5	14.0	0.6	7236	chr2L	12558264	intergenic	not near genes	chr2L	12561882	intergenic	not near genes	chr2L	12565500	intergenic	not near genes	chr2L_9_12560001	chr2L_12560001	CanS-SH
323	chr2L	12730997	12731031	chr2L	12735839	12735873	F-element	10	4842	18.5	6.5	12.5	0.7	4876	chr2L	12730997	intron	MRP +	chr2L	12733435	intron	MRP +	chr2L	12735873	intron	MRP +	chr2L_10_12730001	chr2L_12730001	CanS-SH
324	chr2L	12739112	12739144	chr2L	12743968	12744000	Doc	16	4856	19.5	8.0	13.8	1.1	4888	chr2L	12739112	exon	MRP +	chr2L	12741556	intron	MRP +	chr2L	12744000	exon	MRP +	chr2L_16_12740001	chr2L_12740001	CanS-SH
326	chr2L	12781751	12781774	chr2L	12789269	12789292	Quasimodo	7	7518	15.0	5.0	10.0	0.6	7541	chr2L	12781751	intergenic	not near genes	chr2L	12785522	intergenic	not near genes	chr2L	12789292	intergenic	not near genes	chr2L_7_12785001	chr2L_12785001	CanS-SH
329	chr2L	12861638	12861664	chr2L	12863180	12863206	hobo	8	1542	16.0	7.5	11.8	0.6	1568	chr2L	12861638	intergenic	not near genes	chr2L	12862422	intergenic	not near genes	chr2L	12863206	intergenic	not near genes	chr2L_8_12860001	chr2L_12860001	CanS-SH
330	chr2L	12893973	12893994	chr2L	12895515	12895536	hobo	4	1542	21.0	11.0	16.0	0.2	1563	chr2L	12893973	intergenic	not near genes	chr2L	12894754	intergenic	not near genes	chr2L	12895536	intergenic	not near genes	chr2L_4_12890001	chr2L_12890001	CanS-SH
331	chr2L	12933793	12933823	chr2L	12941335	12941364	blood	6	7542	12.5	7.0	9.8	0.6	7571	chr2L	12933793	intergenic	not near genes	chr2L	12937578	intergenic	not near genes	chr2L	12941364	intergenic	not near genes	chr2L_6_12935001	chr2L_12935001	CanS-SH
341	chr2L	13405591	13405626	chr2L	13410463	13410498	Doc	24	4872	19.5	17.0	18.2	1.2	4907	chr2L	13405591	exon	CG7110 +	chr2L	13408044	intron	CG7110 +	chr2L	13410498	intron	CG7110 +	chr2L_24_13405001	chr2L_13405001	CanS-SH
342	chr2L	13449402	13449437	chr2L	13456913	13456948	Quasimodo	9	7511	14.0	8.0	11.0	0.8	7546	chr2L	13449402	intron,intron	CG42784 +,Hsp60D -	chr2L	13453175	intron	CG42784 +	chr2L	13456948	intron	CG42784 +	chr2L_9_13450001	chr2L_13450001	CanS-SH
343	chr2L	13481391	13481422	chr2L	13482073	13482104	jockey	15	682	18.0	10.0	14.0	1.0	713	chr2L	13481391	intron	CG42784 +	chr2L	13481748	intron	CG42784 +	chr2L	13482104	intron	CG42784 +	chr2L_15_13480001	chr2L_13480001	CanS-SH
344	chr2L	13560340	13560377	chr2L	13565236	13565272	F-element	13	4896	22.5	13.0	17.8	0.7	4932	chr2L	13560340	intron	kuz +	chr2L	13562806	intron	kuz +	chr2L	13565272	intron	kuz +	chr2L_13_13560001	chr2L_13560001	CanS-SH
347	chr2L	13761748	13761772	chr2L	13762934	13762958	Doc	8	1186	16.5	7.5	12.0	0.6	1210	chr2L	13761748	intron	TM9SF4 +	chr2L	13762353	intron	TM9SF4 +	chr2L	13762958	intron	TM9SF4 +	chr2L_8_13760001	chr2L_13760001	CanS-SH
348	chr2L	13853028	13853057	chr2L	13862253	13862282	roo	13	9225	15.0	10.0	12.5	1.0	9254	chr2L	13853028	intron	CenG1A +	chr2L	13857655	intron	CenG1A +	chr2L	13862282	intron	CenG1A +	chr2L_13_13855001	chr2L_13855001	CanS-SH
370	chr2L	14618844	14618889	chr2L	14619300	14619345	jockey	8	456	8.0	5.5	6.8	1.0	501	chr2L	14618844	intron,3` UTR,3` UTR	osp -,Adh +,Adhr +	chr2L	14619094	intron	osp -	chr2L	14619345	intron	osp -	chr2L_8_14615001	chr2L_14615001	CanS-SH
372	chr2L	14642511	14642543	chr2L	14651749	14651781	roo	11	9238	15.5	8.5	12.0	0.8	9270	chr2L	14642511	intron	osp -	chr2L	14647146	intron	osp -	chr2L	14651781	intron	osp -	chr2L_11_14645001	chr2L_14645001	CanS-SH
376	chr2L	14803825	14803855	chr2L	14809103	14809133	copia	10	5278	9.0	7.5	8.2	1.1	5308	chr2L	14803825	intergenic	not near genes	chr2L	14806479	intergenic	not near genes	chr2L	14809133	intergenic	not near genes	chr2L_10_14805001	chr2L_14805001	CanS-SH
381	chr2L	14889890	14889925	chr2L	14890390	14890425	jockey	9	500	12.0	8.0	10.0	0.8	535	chr2L	14889890	intergenic	not near genes	chr2L	14890158	intergenic	not near genes	chr2L	14890425	intergenic	not near genes	chr2L_9_14890001	chr2L_14890001	CanS-SH
402	chr2L	15445986	15446028	chr2L	15453530	15453572	blood	10	7544	10.5	0.0	5.2	1.6	7586	chr2L	15445986	intergenic	not near genes	chr2L	15449779	intergenic	not near genes	chr2L	15453572	intergenic	not near genes	chr2L_10_15445001	chr2L_15445001	CanS-SH
408	chr2L	15586350	15586386	chr2L	15593477	15593513	297	13	7127	16.0	10.0	13.0	0.9	7163	chr2L	15586350	intergenic	not near genes	chr2L	15589932	intergenic	not near genes	chr2L	15593513	intergenic	not near genes	chr2L_13_15585001	chr2L_15585001	CanS-SH
415	chr2L	15955963	15956000	chr2L	15957505	15957542	hobo	15	1542	11.0	9.0	10.0	1.4	1579	chr2L	15955963	intron	beat-Ib -	chr2L	15956752	intron	beat-Ib -	chr2L	15957542	intron	beat-Ib -	chr2L_15_15955001	chr2L_15955001	CanS-SH
421	chr2L	16141071	16141106	chr2L	16146367	16146402	copia	7	5296	9.0	6.5	7.8	0.8	5331	chr2L	16141071	intergenic	not near genes	chr2L	16143736	intergenic	not near genes	chr2L	16146402	intergenic	not near genes	chr2L_7_16140001	chr2L_16140001	CanS-SH
422	chr2L	16153668	16153756	chr2L	16160811	16160899	297	10	7143	6.0	3.0	4.5	1.8	7231	chr2L	16153668	intergenic	not near genes	chr2L	16157284	intergenic	not near genes	chr2L	16160899	intergenic	not near genes	chr2L_10_16155001	chr2L_16155001	CanS-SH
432	chr2L	16511917	16511996	chr2L	16519119	16519198	HMS-Beagle	8	7202	6.0	6.5	6.2	1.1	7281	chr2L	16511917	intron	CG5953 -	chr2L	16515558	intron	CG5953 -	chr2L	16519198	intron	CG5953 -	chr2L_8_16515001	chr2L_16515001	CanS-SH
441	chr2L	16852724	16852798	chr2L	16859940	16860015	Doc4-element	11	7216	41.0	9.0	25.0	0.4	7291	chr2L	16852724	intergenic	CG31810 -	chr2L	16856370	intron	CG31809 -	chr2L	16860015	intergenic	CG6012 -	chr2L_11_16855001	chr2L_16855001	CanS-SH
444	chr2L	16958044	16958082	chr2L	16962907	16962945	Doc	12	4863	16.5	7.5	12.0	0.9	4901	chr2L	16958044	intergenic	not near genes	chr2L	16960494	intergenic	not near genes	chr2L	16962945	intergenic	not near genes	chr2L_12_16960001	chr2L_16960001	CanS-SH
453	chr2L	17144267	17144300	chr2L	17152010	17152043	opus	9	7743	10.0	8.0	9.0	0.9	7776	chr2L	17144267	intron,intron	CG34106 +,beat-IIIa +	chr2L	17148155	intron,intron	CG34106 +,beat-IIIa +	chr2L	17152043	intron,intron	CG34106 +,beat-IIIa +	chr2L_9_17145001	chr2L_17145001	CanS-SH
454	chr2L	17167512	17167541	chr2L	17167828	17167857	pogo	4	316	7.0	9.5	8.2	0.4	345	chr2L	17167512	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167684	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167857	intron,intron	CG34106 +,beat-IIIa +	chr2L_4_17165001	chr2L_17165001	CanS-SH
455	chr2L	17199099	17199135	chr2L	17200641	17200677	hobo	9	1542	13.0	3.5	8.2	1.0	1578	chr2L	17199099	intron	beat-IIIc -	chr2L	17199888	intron	beat-IIIc -	chr2L	17200677	intron	beat-IIIc -	chr2L_9_17195001	chr2L_17195001	CanS-SH
456	chr2L	17273129	17273169	chr2L	17277987	17278027	F-element	13	4858	11.5	1.5	6.5	1.7	4898	chr2L	17273129	intergenic	not near genes	chr2L	17275578	intergenic	not near genes	chr2L	17278027	intergenic	not near genes	chr2L_13_17275001	chr2L_17275001	CanS-SH
465	chr2L	17431944	17432040	chr2L	17432125	17432222	1360	6	182	0.0	9.0	4.5	1.1	278	chr2L	17431944	intron	Dif -	chr2L	17432083	intron	Dif -	chr2L	17432222	intron	Dif -	chr2L_6_17430001	chr2L_17430001	CanS-SH
473	chr2L	17687454	17687518	chr2L	17692274	17692338	F-element	11	4820	4.5	9.0	6.8	1.4	4884	chr2L	17687454	intron	CadN -	chr2L	17689896	intron	CadN -	chr2L	17692338	intron	CadN -	chr2L_11_17685001	chr2L_17685001	CanS-SH
475	chr2L	17727793	17727818	chr2L	17729335	17729360	hobo	7	1542	10.0	7.0	8.5	0.7	1567	chr2L	17727793	intron	CadN -	chr2L	17728576	intron	CadN -	chr2L	17729360	intron	CadN -	chr2L_7_17725001	chr2L_17725001	CanS-SH
477	chr2L	17819860	17819894	chr2L	17825138	17825172	copia	9	5278	16.0	8.0	12.0	0.7	5312	chr2L	17819860	intron	CadN2 -	chr2L	17822516	intron	CadN2 -	chr2L	17825172	intron	CadN2 -	chr2L_9_17820001	chr2L_17820001	CanS-SH
480	chr2L	17911898	17911932	chr2L	17914151	17914185	pogo	8	2253	13.0	8.0	10.5	0.7	2287	chr2L	17911898	intergenic	not near genes	chr2L	17913042	intergenic	not near genes	chr2L	17914185	intergenic	CG43271 -	chr2L_8_17910001	chr2L_17910001	CanS-SH
482	chr2L	17951884	17951918	chr2L	17953426	17953460	hobo	9	1542	14.5	8.0	11.2	0.7	1576	chr2L	17951884	intergenic	CR44398 -,CR44397 -	chr2L	17952672	intergenic	not near genes	chr2L	17953460	intergenic	not near genes	chr2L_9_17950001	chr2L_17950001	CanS-SH
486	chr2L	18051817	18051853	chr2L	18061039	18061075	roo	18	9222	18.0	10.5	14.2	1.2	9258	chr2L	18051817	intron	rdo +	chr2L	18056446	intron	rdo +	chr2L	18061075	intron	rdo +	chr2L_18_18055001	chr2L_18055001	CanS-SH
490	chr2L	18407980	18407999	chr2L	18412838	18412858	Doc	4	4859	13.0	11.5	12.2	0.3	4878	chr2L	18407980	intergenic	not near genes	chr2L	18410419	intergenic	not near genes	chr2L	18412858	intergenic	not near genes	chr2L_4_18410001	chr2L_18410001	CanS-SH
499	chr2L	19147306	19147340	chr2L	19154416	19154450	297	14	7110	16.5	11.0	13.8	0.9	7144	chr2L	19147306	intron	brat +	chr2L	19150878	intron	brat +	chr2L	19154450	intron	brat +	chr2L_14_19150001	chr2L_19150001	CanS-SH
501	chr2L	19272439	19272444	chr2L	19272683	19272688	BS	4	244	13.5	0.0	6.8	0.5	249	chr2L	19272439	intron	CR44190 -	chr2L	19272564	intron	CR44190 -	chr2L	19272688	intron	CR44190 -	chr2L_4_19270001	chr2L_19270001	CanS-SH
503	chr2L	19344957	19344988	chr2L	19357241	19357272	blood	12	12284	11.5	8.5	10.0	1.1	12315	chr2L	19344957	intron	dnt -	chr2L	19351114	intron	dnt -	chr2L	19357272	intron	dnt -	chr2L_12_19350001	chr2L_19350001	CanS-SH
514	chr2L	19620035	19620069	chr2L	19621099	19621133	jockey	13	1064	19.5	9.0	14.2	0.9	1098	chr2L	19620035	intron	Lar +	chr2L	19620584	intron	Lar +	chr2L	19621133	intron	Lar +	chr2L_13_19620001	chr2L_19620001	CanS-SH
515	chr2L	19652510	19652549	chr2L	19674019	19674058	opus	15	21509	16.0	9.5	12.8	1.1	21548	chr2L	19652510	intron	Lar +	chr2L	19663284	intron	Lar +	chr2L	19674058	intron	Lar +	chr2L_15_19660001	chr2L_19660001	CanS-SH
517	chr2L	19703479	19703568	chr2L	19712690	19712810	roo	13	9218	8.5	0.0	4.2	2.5	9331	chr2L	19703479	intron	Lar +	chr2L	19708144	intron	Lar +	chr2L	19712810	intron	Lar +	chr2L_13_19705001	chr2L_19705001	CanS-SH
519	chr2L	19737293	19737321	chr2L	19740837	19740865	1360	8	3544	17.5	10.0	13.8	0.5	3572	chr2L	19737293	intergenic	Nf-YB +	chr2L	19739079	intergenic	not near genes	chr2L	19740865	intergenic	not near genes	chr2L_8_19735001	chr2L_19735001	CanS-SH
520	chr2L	19762744	19762782	chr2L	19763061	19763099	pogo	7	317	13.0	8.5	10.8	0.6	355	chr2L	19762744	exon	fbp -	chr2L	19762922	intron	fbp -	chr2L	19763099	intron	fbp -	chr2L_7_19760001	chr2L_19760001	CanS-SH
529	chr2L	20005816	20005854	chr2L	20010967	20011005	flea	16	5151	15.5	6.5	11.0	1.3	5189	chr2L	20005816	intron	CG43861 -	chr2L	20008410	intron	CG43861 -	chr2L	20011005	intron	CG43861 -	chr2L_16_20005001	chr2L_20005001	CanS-SH
535	chr2L	20272063	20272090	chr2L	20282849	20282876	copia	8	10786	14.0	10.5	12.2	0.6	10813	chr2L	20272063	intergenic	not near genes	chr2L	20277470	intergenic	not near genes	chr2L	20282876	intergenic	not near genes	chr2L_8_20275001	chr2L_20275001	CanS-SH
537	chr2L	20303105	20303119	chr2L	20310632	20310646	blood	4	7527	9.5	9.0	9.2	0.4	7541	chr2L	20303105	intergenic	not near genes	chr2L	20306876	intergenic	not near genes	chr2L	20310646	intergenic	not near genes	chr2L_4_20305001	chr2L_20305001	CanS-SH
542	chr2L	20568592	20568633	chr2L	20569057	20569098	X-element	16	465	13.0	7.0	10.0	1.5	506	chr2L	20568592	intron	CR45347 +	chr2L	20568845	intron	CR45347 +	chr2L	20569098	intron	CR45347 +	chr2L_16_20565001	chr2L_20565001	CanS-SH
543	chr2L	20576155	20576201	chr2L	20583698	20583744	blood	20	7543	6.5	10.0	8.2	2.2	7589	chr2L	20576155	intergenic	CR45347 +	chr2L	20579950	intergenic	not near genes	chr2L	20583744	3` UTR	CR44909 -	chr2L_20_20575001	chr2L_20575001	CanS-SH
552	chr2L	20835745	20835783	chr2L	20836536	20836575	Quasimodo	11	792	13.0	7.5	10.2	1.0	830	chr2L	20835745	5` UTR	Oseg5 -	chr2L	20836160	intergenic	Oseg5 -,Spn38F -	chr2L	20836575	intergenic	Spn38F -	chr2L_11_20835001	chr2L_20835001	CanS-SH
554	chr2L	20891459	20891546	chr2L	20896635	20896722	jockey	21	5176	4.0	8.5	6.2	2.9	5263	chr2L	20891459	intron,intron	CG43739 -,sky -	chr2L	20894090	intron,intron	CG43739 -,sky -	chr2L	20896722	intron,intron	CG43739 -,sky -	chr2L_21_20890001	chr2L_20890001	CanS-SH
555	chr2L	20901388	20901425	chr2L	20902627	20902664	1360	7	1239	12.5	11.5	12.0	0.5	1276	chr2L	20901388	intron,intron	CG43739 -,sky -	chr2L	20902026	intron,intron	CG43739 -,sky -	chr2L	20902664	intron,intron	CG43739 -,sky -	chr2L_7_20900001	chr2L_20900001	CanS-SH
558	chr2L	20976588	20976618	chr2L	20981478	20981508	X-element	12	4890	22.5	6.0	14.2	0.8	4920	chr2L	20976588	intron	CG42238 -	chr2L	20979048	intron	CG42238 -	chr2L	20981508	intron	CG42238 -	chr2L_12_20975001	chr2L_20975001	CanS-SH
559	chr2L	21020217	21020255	chr2L	21023969	21024007	NOF	12	3752	17.5	10.0	13.8	0.8	3790	chr2L	21020217	intron	CG42238 -	chr2L	21022112	intron	CG42238 -	chr2L	21024007	intron	CG42238 -	chr2L_12_21020001	chr2L_21020001	CanS-SH
560	chr2L	21041075	21041113	chr2L	21049411	21049449	Tirant	14	8336	12.5	12.0	12.2	1.1	8374	chr2L	21041075	intron	CG42238 -	chr2L	21045262	intron	CG42238 -	chr2L	21049449	intron	CG42238 -	chr2L_14_21045001	chr2L_21045001	CanS-SH
566	chr2L	21337793	21337815	chr2L	21338333	21338355	BS	8	540	17.5	7.5	12.5	0.6	562	chr2L	21337793	intron	dimm +	chr2L	21338074	intron	dimm +	chr2L	21338355	intron	dimm +	chr2L_8_21335001	chr2L_21335001	CanS-SH
567	chr2L	21347501	21347530	chr2L	21355047	21355076	blood	12	7546	15.0	0.5	7.8	1.4	7575	chr2L	21347501	intron	Tsp39D +	chr2L	21351288	intron	Tsp39D +	chr2L	21355076	intron	Tsp39D +	chr2L_12_21350001	chr2L_21350001	CanS-SH
568	chr2L	21596982	21596992	chr2L	21604801	21604811	roo	5	7819	18.0	11.5	14.8	0.3	7829	chr2L	21596982	intergenic	not near genes	chr2L	21600896	intergenic	not near genes	chr2L	21604811	intergenic	not near genes	chr2L_5_21600001	chr2L_21600001	CanS-SH
575	chr2L	21981629	21981658	chr2L	21990869	21990898	roo	12	9240	14.0	8.0	11.0	1.0	9269	chr2L	21981629	exon	CG2528 -	chr2L	21986264	intron	CG2528 -	chr2L	21990898	exon	CG2528 -	chr2L_12_21985001	chr2L_21985001	CanS-SH
580	chr2L	22082187	22082211	chr2L	22082408	22082432	INE-1	10	221	9.5	4.0	6.8	1.3	245	chr2L	22082187	intergenic	not near genes	chr2L	22082310	intergenic	not near genes	chr2L	22082432	intergenic	not near genes	chr2L_10_22080001	chr2L_22080001	CanS-SH
586	chr2L	22258556	22258581	chr2L	22260755	22260780	G6	10	2199	12.0	12.0	12.0	0.8	2224	chr2L	22258556	intergenic	Tif-IA +	chr2L	22259668	intergenic	not near genes	chr2L	22260780	intergenic	not near genes	chr2L_10_22255001	chr2L_22255001	CanS-SH
588	chr2L	22515082	22515105	chr2L	22522607	22522630	HMS-Beagle2	9	7525	13.5	0.0	6.8	1.2	7548	chr2L	22515082	intergenic	not near genes	chr2L	22518856	intergenic	not near genes	chr2L	22522630	intergenic	not near genes	chr2L_9_22515001	chr2L_22515001	CanS-SH
590	chr2L	22581909	22581935	chr2L	22583773	22583799	S-element	9	1864	20.5	8.0	14.2	0.6	1890	chr2L	22581909	intron	CG17494 +	chr2L	22582854	intron	CG17494 +	chr2L	22583799	intron	CG17494 +	chr2L_9_22580001	chr2L_22580001	CanS-SH
591	chr2L	22776359	22776395	chr2L	22778223	22778259	S-element	17	1864	15.0	10.5	12.8	1.2	1900	chr2L	22776359	intergenic	not near genes	chr2L	22777309	intergenic	not near genes	chr2L	22778259	intergenic	not near genes	chr2L_17_22775001	chr2L_22775001	CanS-SH
593	chr2R	1516542	1516585	chr2R	1521345	1521388	1731	36	4803	66.0	55.5	60.8	0.6	4846	chr2R	1516542	exon	Maf1 -	chr2R	1518965	intron	Maf1 -	chr2R	1521388	5` UTR	Maf1 -	chr2R_36_1515001	chr2R_1515001	CanS-SH
595	chr2R	2498926	2498962	chr2R	2508148	2508184	roo	17	9222	16.0	11.0	13.5	1.2	9258	chr2R	2498926	intron	MFS17 -	chr2R	2503555	intron	MFS17 -	chr2R	2508184	intron	MFS17 -	chr2R_17_2500001	chr2R_2500001	CanS-SH
596	chr2R	2590026	2590055	chr2R	2590862	2590891	copia	4	836	39.5	38.0	38.8	0.1	865	chr2R	2590026	intergenic	not near genes	chr2R	2590458	intergenic	not near genes	chr2R	2590891	intergenic	not near genes	chr2R_4_2590001	chr2R_2590001	CanS-SH
598	chr2R	3144039	3144104	chr2R	3393392	3393457	Doc	10	249353	28.5	23.5	26.0	0.4	249418	chr2R	3144039	intron	CG42596 +	chr2R	3268748	intergenic	not near genes	chr2R	3393457	intergenic	not near genes	chr2R_10_3265001	chr2R_3265001	CanS-SH
601	chr2R	3532571	3532583	chr2R	3536089	3536101	Doc	8	3518	12.0	6.5	9.2	0.8	3530	chr2R	3532571	intergenic	not near genes	chr2R	3534336	intergenic	not near genes	chr2R	3536101	intergenic	not near genes	chr2R_8_3530001	chr2R_3530001	CanS-SH
602	chr2R	1365714	1365717	chr2R	3915285	3915288	297	4	2549571	27.0	31.0	29.0	0.1	2549574	chr2R	1365714	intron	l(2)41Ab +	chr2R	2640501	intergenic	not near genes	chr2R	3915288	intron	uex -	chr2R_4_2640001	chr2R_2640001	CanS-SH
610	chr2R	5075192	5075222	chr2R	5075758	5075788	G5	13	566	11.0	6.0	8.5	1.4	596	chr2R	5075192	intergenic	not near genes	chr2R	5075490	intergenic	not near genes	chr2R	5075788	intergenic	not near genes	chr2R_13_5075001	chr2R_5075001	CanS-SH
612	chr2R	5127749	5127768	chr2R	5127920	5127939	INE-1	9	171	9.0	16.5	12.8	0.7	190	chr2R	5127749	intron,intron	gus -,CR43256 +	chr2R	5127844	intron,intron	gus -,CR43256 +	chr2R	5127939	intron,intron	gus -,CR43256 +	chr2R_9_5125001	chr2R_5125001	CanS-SH
616	chr2R	5299543	5299560	chr2R	5299996	5300013	INE-1	9	453	60.5	46.5	53.5	0.2	470	chr2R	5299543	intergenic	not near genes	chr2R	5299778	intergenic	not near genes	chr2R	5300013	intergenic	not near genes	chr2R_9_5295001	chr2R_5295001	CanS-SH
618	chr2R	5417935	5417963	chr2R	5420642	5420670	Burdock	12	2707	13.5	11.5	12.5	0.9	2735	chr2R	5417935	intron	laccase2 +	chr2R	5419302	intron	laccase2 +	chr2R	5420670	intron	laccase2 +	chr2R_12_5415001	chr2R_5415001	CanS-SH
632	chr2R	5869206	5869243	chr2R	5874365	5874402	flea	14	5159	18.5	8.0	13.2	1.0	5196	chr2R	5869206	intergenic	not near genes	chr2R	5871804	intergenic	not near genes	chr2R	5874402	intergenic	not near genes	chr2R_14_5870001	chr2R_5870001	CanS-SH
635	chr2R	6096658	6096694	chr2R	6101931	6101967	BS	11	5273	15.5	5.5	10.5	1.0	5309	chr2R	6096658	intron	EcR -	chr2R	6099312	intron	EcR -	chr2R	6101967	intron	EcR -	chr2R_11_6095001	chr2R_6095001	CanS-SH
636	chr2R	6494470	6494505	chr2R	6499307	6499342	F-element	7	4837	16.5	12.5	14.5	0.5	4872	chr2R	6494470	intergenic	not near genes	chr2R	6496906	intergenic	not near genes	chr2R	6499342	intergenic	not near genes	chr2R_7_6495001	chr2R_6495001	CanS-SH
639	chr2R	6579733	6579742	chr2R	6584894	6584903	flea	5	5161	17.0	9.0	13.0	0.4	5170	chr2R	6579733	intron	jing +	chr2R	6582318	intron	jing +	chr2R	6584903	intron	jing +	chr2R_5_6580001	chr2R_6580001	CanS-SH
645	chr2R	6952113	6952134	chr2R	6959769	6959790	opus	6	7656	11.0	12.0	11.5	0.5	7677	chr2R	6952113	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955952	intron,intron	mim -,CheB42c -	chr2R	6959790	intron,intron	mim -,CheB42c -	chr2R_6_6955001	chr2R_6955001	CanS-SH
649	chr2R	7139821	7139853	chr2R	7141412	7141444	hopper2	13	1591	10.5	3.5	7.0	1.6	1623	chr2R	7139821	intergenic	not near genes	chr2R	7140632	intergenic	not near genes	chr2R	7141444	intergenic	not near genes	chr2R_13_7140001	chr2R_7140001	CanS-SH
651	chr2R	7196509	7196539	chr2R	7201359	7201389	F-element	14	4850	13.0	12.0	12.5	1.0	4880	chr2R	7196509	intron	pk +	chr2R	7198949	intron	pk +	chr2R	7201389	intron	pk +	chr2R_14_7195001	chr2R_7195001	CanS-SH
652	chr2R	7235764	7235790	chr2R	7240931	7240957	jockey	9	5167	20.5	4.5	12.5	0.7	5193	chr2R	7235764	intergenic	not near genes	chr2R	7238360	intergenic	not near genes	chr2R	7240957	intergenic	not near genes	chr2R_9_7235001	chr2R_7235001	CanS-SH
653	chr2R	7434835	7434865	chr2R	7439211	7439241	Juan	14	4376	16.5	9.5	13.0	1.0	4406	chr2R	7434835	3` UTR	so +	chr2R	7437038	intergenic	not near genes	chr2R	7439241	intergenic	not near genes	chr2R_14_7435001	chr2R_7435001	CanS-SH
656	chr2R	7608348	7608443	chr2R	7613626	7613698	I-element	18	5272	7.0	0.0	3.5	4.0	5350	chr2R	7608348	intron	CG1358 -	chr2R	7611023	intron	CG1358 -	chr2R	7613698	intron	CG1358 -	chr2R_18_7610001	chr2R_7610001	CanS-SH
663	chr2R	7815608	7815650	chr2R	7822152	7822194	Burdock	13	6544	13.0	7.5	10.2	1.2	6586	chr2R	7815608	intergenic	CG1882 +	chr2R	7818901	intergenic	not near genes	chr2R	7822194	3` UTR	cathD -	chr2R_13_7815001	chr2R_7815001	CanS-SH
664	chr2R	7862201	7862240	chr2R	7867360	7867399	flea	16	5159	13.5	15.0	14.2	1.1	5198	chr2R	7862201	intron	Dgk -	chr2R	7864800	intron	Dgk -	chr2R	7867399	intron	Dgk -	chr2R_16_7860001	chr2R_7860001	CanS-SH
665	chr2R	7869127	7869161	chr2R	7873988	7874022	Doc	12	4861	18.0	8.5	13.2	0.8	4895	chr2R	7869127	intron	Dgk -	chr2R	7871574	intron	Dgk -	chr2R	7874022	intron	Dgk -	chr2R_12_7870001	chr2R_7870001	CanS-SH
673	chr2R	8330799	8330830	chr2R	8331360	8331391	roo	14	561	15.5	9.0	12.2	1.1	592	chr2R	8330799	intron	pdm3 +	chr2R	8331095	intron	pdm3 +	chr2R	8331391	intron	pdm3 +	chr2R_14_8330001	chr2R_8330001	CanS-SH
676	chr2R	8398150	8398185	chr2R	8403006	8403041	Doc	15	4856	19.5	12.0	15.8	0.9	4891	chr2R	8398150	exon	CG2121 -	chr2R	8400596	intron	CG2121 -	chr2R	8403041	intron	CG2121 -	chr2R_15_8400001	chr2R_8400001	CanS-SH
677	chr2R	8416243	8416322	chr2R	8417142	8417221	I-element	8	899	7.5	8.5	8.0	0.9	978	chr2R	8416243	intergenic	not near genes	chr2R	8416732	intergenic	CG43296 -	chr2R	8417221	3` UTR	CG43296 -	chr2R_8_8415001	chr2R_8415001	CanS-SH
683	chr2R	8565991	8566022	chr2R	8567012	8567043	1360	13	1021	13.0	16.0	14.5	0.8	1052	chr2R	8565991	5` UTR	Cyp6a14 -	chr2R	8566517	5` UTR	Cyp6a14 -	chr2R	8567043	5` UTR	Cyp6a14 -	chr2R_13_8565001	chr2R_8565001	CanS-SH
684	chr2R	8722703	8722740	chr2R	8723019	8723056	pogo	10	316	14.0	4.5	9.2	1.0	353	chr2R	8722703	intron	CG14767 -	chr2R	8722880	intron	CG14767 -	chr2R	8723056	intron	CG14767 -	chr2R_10_8720001	chr2R_8720001	CanS-SH
685	chr2R	8777851	8777944	chr2R	8784130	8784223	diver	17	6279	7.5	10.5	9.0	1.7	6372	chr2R	8777851	intergenic	not near genes	chr2R	8781037	intergenic	not near genes	chr2R	8784223	intergenic	not near genes	chr2R_17_8780001	chr2R_8780001	CanS-SH
691	chr2R	9212642	9212668	chr2R	9213203	9213229	roo	11	561	18.0	0.0	9.0	1.1	587	chr2R	9212642	intergenic	CR45309 +	chr2R	9212936	intergenic	CR45309 +	chr2R	9213229	5` UTR	CR45309 +	chr2R_11_9210001	chr2R_9210001	CanS-SH
697	chr2R	9352165	9352172	chr2R	9361389	9361396	roo	5	9224	16.0	7.0	11.5	0.4	9231	chr2R	9352165	intron	CG13954 -	chr2R	9356780	intron	CG13954 -	chr2R	9361396	intron	CG13954 -	chr2R_5_9355001	chr2R_9355001	CanS-SH
699	chr2R	9480019	9480045	chr2R	9490625	9490651	roo	14	10606	17.0	13.5	15.2	0.9	10632	chr2R	9480019	intergenic	not near genes	chr2R	9485335	intergenic	not near genes	chr2R	9490651	intergenic	not near genes	chr2R_14_9485001	chr2R_9485001	CanS-SH
707	chr2R	9726556	9726592	chr2R	9734182	9734218	17.6	19	7626	16.5	11.0	13.8	1.3	7662	chr2R	9726556	intron	sqa -	chr2R	9730387	intron	sqa -	chr2R	9734218	intron	sqa -	chr2R_19_9730001	chr2R_9730001	CanS-SH
708	chr2R	9870982	9871020	chr2R	9871543	9871581	roo	17	561	19.0	13.0	16.0	1.0	599	chr2R	9870982	intron	cbx -	chr2R	9871282	intron	cbx -	chr2R	9871581	intron,5` UTR	cbx -,CG18446 +	chr2R_17_9870001	chr2R_9870001	CanS-SH
711	chr2R	9945377	9945417	chr2R	9945648	9945688	BS	7	271	14.5	8.5	11.5	0.6	311	chr2R	9945377	intron	Mef2 -	chr2R	9945532	intron	Mef2 -	chr2R	9945688	intron	Mef2 -	chr2R_7_9945001	chr2R_9945001	CanS-SH
714	chr2R	10005788	10005828	chr2R	10007028	10007068	1360	15	1240	12.0	11.0	11.5	1.2	1280	chr2R	10005788	intron	Pka-R2 -	chr2R	10006428	intron	Pka-R2 -	chr2R	10007068	intron	Pka-R2 -	chr2R_15_10005001	chr2R_10005001	CanS-SH
725	chr2R	10176818	10176860	chr2R	10186060	10186102	roo	14	9242	9.5	5.0	7.2	1.7	9284	chr2R	10176818	intron	KCNQ -	chr2R	10181460	intron	KCNQ -	chr2R	10186102	intron	KCNQ -	chr2R_14_10180001	chr2R_10180001	CanS-SH
745	chr2R	10585498	10585579	chr2R	10594156	10594237	Tirant	5	8658	7.0	8.0	7.5	0.6	8739	chr2R	10585498	intron	psq +	chr2R	10589868	intron	psq +	chr2R	10594237	intron	psq +	chr2R_5_10585001	chr2R_10585001	CanS-SH
757	chr2R	10979588	10979628	chr2R	10980133	10980171	297	6	545	14.5	6.5	10.5	0.5	583	chr2R	10979588	intergenic	not near genes	chr2R	10979880	intergenic	not near genes	chr2R	10980171	intergenic	not near genes	chr2R_6_10975001	chr2R_10975001	CanS-SH
759	chr2R	11009758	11009782	chr2R	11019007	11019031	roo	9	9249	16.0	7.0	11.5	0.7	9273	chr2R	11009758	intron	luna -	chr2R	11014394	intron	luna -	chr2R	11019031	intron	luna -	chr2R_9_11010001	chr2R_11010001	CanS-SH
760	chr2R	11019825	11019853	chr2R	11024966	11024994	jockey	11	5141	16.0	6.5	11.2	0.9	5169	chr2R	11019825	intron	luna -	chr2R	11022410	intron	luna -	chr2R	11024994	intron	luna -	chr2R_11_11020001	chr2R_11020001	CanS-SH
767	chr2R	11207761	11207791	chr2R	11208028	11208059	BS	12	268	13.5	12.5	13.0	0.9	298	chr2R	11207761	intron	shn +	chr2R	11207910	intron	shn +	chr2R	11208059	intron	shn +	chr2R_12_11205001	chr2R_11205001	CanS-SH
768	chr2R	11297558	11297592	chr2R	11301954	11301988	flea	15	4396	14.5	10.5	12.5	1.1	4430	chr2R	11297558	intergenic	CG42336 -	chr2R	11299773	intergenic	not near genes	chr2R	11301988	5` UTR	CG7741 +	chr2R_15_11295001	chr2R_11295001	CanS-SH
773	chr2R	11415454	11415491	chr2R	11418678	11418715	opus	19	3224	13.5	14.0	13.8	1.3	3261	chr2R	11415454	intron,3` UTR	Drip -,CG7763 +	chr2R	11417084	intron	Drip -	chr2R	11418715	intron	Drip -	chr2R_19_11415001	chr2R_11415001	CanS-SH
774	chr2R	11472587	11472629	chr2R	11473859	11473901	pogo	14	1272	12.5	15.0	13.8	0.9	1314	chr2R	11472587	intergenic	not near genes	chr2R	11473244	intergenic	not near genes	chr2R	11473901	intergenic	not near genes	chr2R_14_11470001	chr2R_11470001	CanS-SH
792	chr2R	12501633	12501665	chr2R	12503870	12503902	Rt1c	14	2237	8.0	10.0	9.0	1.4	2269	chr2R	12501633	intron	fdl -	chr2R	12502768	intron	fdl -	chr2R	12503902	intron	fdl -	chr2R_14_12500001	chr2R_12500001	CanS-SH
801	chr2R	12707454	12707494	chr2R	12715895	12715935	roo	21	8441	14.0	9.5	11.8	1.6	8481	chr2R	12707454	intron	CG42663 +	chr2R	12711694	intron	CG42663 +	chr2R	12715935	intron	CG42663 +	chr2R_21_12710001	chr2R_12710001	CanS-SH
806	chr2R	12789235	12789271	chr2R	12797673	12797709	roo	7	8438	7.5	6.0	6.8	0.9	8474	chr2R	12789235	intron,3` UTR	sca +,CR45137 -	chr2R	12793472	intron,intron	sca +,CR45137 -	chr2R	12797709	intron,3` UTR	sca +,CR45137 -	chr2R_7_12790001	chr2R_12790001	CanS-SH
807	chr2R	12819384	12819427	chr2R	12824528	12824571	jockey	12	5144	12.0	7.5	9.8	1.1	5187	chr2R	12819384	intergenic	not near genes	chr2R	12821978	intergenic	not near genes	chr2R	12824571	intergenic	not near genes	chr2R_12_12820001	chr2R_12820001	CanS-SH
815	chr2R	13136782	13136812	chr2R	13141655	13141685	Doc	13	4873	21.0	7.5	14.2	0.9	4903	chr2R	13136782	exon	Cap-G +	chr2R	13139234	intron	Cap-G +	chr2R	13141685	intron	Cap-G +	chr2R_13_13135001	chr2R_13135001	CanS-SH
828	chr2R	13580432	13580469	chr2R	13580857	13580895	jockey	12	426	17.0	7.0	12.0	0.9	463	chr2R	13580432	3` UTR	CG6191 -	chr2R	13580664	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580895	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_12_13580001	chr2R_13580001	CanS-SH
836	chr2R	13728069	13728109	chr2R	13735801	13735841	opus	14	7732	15.0	9.5	12.2	1.1	7772	chr2R	13728069	intron	fas +	chr2R	13731955	intron	fas +	chr2R	13735841	intron	fas +	chr2R_14_13730001	chr2R_13730001	CanS-SH
842	chr2R	13905545	13905577	chr2R	13907602	13907634	Rt1a	16	2057	13.0	12.5	12.8	1.2	2089	chr2R	13905545	intron	shot -	chr2R	13906590	intron	shot -	chr2R	13907634	intron	shot -	chr2R_16_13905001	chr2R_13905001	CanS-SH
857	chr2R	14394186	14394197	chr2R	14399092	14399103	Doc	5	4906	15.0	12.5	13.8	0.3	4917	chr2R	14394186	intergenic	not near genes	chr2R	14396644	intergenic	not near genes	chr2R	14399103	intergenic	not near genes	chr2R_5_14395001	chr2R_14395001	CanS-SH
859	chr2R	14467234	14467270	chr2R	14476467	14476503	roo	12	9233	15.0	3.5	9.2	1.2	9269	chr2R	14467234	intergenic	not near genes	chr2R	14471868	intergenic	not near genes	chr2R	14476503	5` UTR	CR44462 +	chr2R_12_14470001	chr2R_14470001	CanS-SH
860	chr2R	14497313	14497386	chr2R	14498551	14498623	1360	13	1238	6.0	8.5	7.2	1.6	1310	chr2R	14497313	intergenic	L +,Cpsf160 -	chr2R	14497968	intron	Cpsf160 -	chr2R	14498623	3` UTR	Cpsf160 -	chr2R_13_14495001	chr2R_14495001	CanS-SH
871	chr2R	14889151	14889200	chr2R	14897834	14897875	Max-element	14	8680	13.5	6.0	9.8	1.3	8724	chr2R	14889151	intergenic	Cyp6a8 -	chr2R	14893513	intergenic	not near genes	chr2R	14897875	intergenic	not near genes	chr2R_14_14890001	chr2R_14890001	CanS-SH
878	chr2R	15004666	15004703	chr2R	15005070	15005107	jockey	17	404	17.0	12.5	14.8	1.1	441	chr2R	15004666	intergenic	not near genes	chr2R	15004886	intergenic	not near genes	chr2R	15005107	intergenic	not near genes	chr2R_17_15000001	chr2R_15000001	CanS-SH
879	chr2R	15015420	15015434	chr2R	15022915	15022929	mdg1	7	7495	16.0	0.0	8.0	0.8	7509	chr2R	15015420	intron	hbs +	chr2R	15019174	intron	hbs +	chr2R	15022929	intron	hbs +	chr2R_7_15015001	chr2R_15015001	CanS-SH
881	chr2R	15084918	15084954	chr2R	15092042	15092078	297	9	7124	11.5	11.5	11.5	0.7	7160	chr2R	15084918	intergenic	not near genes	chr2R	15088498	intergenic	not near genes	chr2R	15092078	5` UTR	CR44457 +	chr2R_9_15085001	chr2R_15085001	CanS-SH
882	chr2R	15119264	15119294	chr2R	15127820	15127850	Tirant	11	8556	16.5	11.0	13.8	0.7	8586	chr2R	15119264	intron	chn +	chr2R	15123557	intron	chn +	chr2R	15127850	intron	chn +	chr2R_11_15120001	chr2R_15120001	CanS-SH
890	chr2R	15340627	15340659	chr2R	15349285	15349317	Tirant	16	8658	15.0	12.5	13.8	1.1	8690	chr2R	15340627	intron	unc-5 +	chr2R	15344972	intron	unc-5 +	chr2R	15349317	intron	unc-5 +	chr2R_16_15340001	chr2R_15340001	CanS-SH
906	chr2R	16061655	16061685	chr2R	16064366	16064396	Burdock	6	2711	12.5	5.5	9.0	0.6	2741	chr2R	16061655	intergenic	not near genes	chr2R	16063026	intergenic	not near genes	chr2R	16064396	intergenic	not near genes	chr2R_6_16060001	chr2R_16060001	CanS-SH
939	chr2R	17147184	17147213	chr2R	17152289	17152319	jockey	14	5106	16.5	14.0	15.2	0.9	5135	chr2R	17147184	intergenic	not near genes	chr2R	17149752	intergenic	not near genes	chr2R	17152319	intergenic	not near genes	chr2R_14_17145001	chr2R_17145001	CanS-SH
941	chr2R	17176262	17176279	chr2R	17182543	17182560	diver	6	6281	5.0	7.0	6.0	0.9	6298	chr2R	17176262	intergenic	not near genes	chr2R	17179411	intergenic	not near genes	chr2R	17182560	intergenic	not near genes	chr2R_6_17175001	chr2R_17175001	CanS-SH
943	chr2R	17236444	17236486	chr2R	17241723	17241765	copia	12	5279	11.0	10.0	10.5	1.0	5321	chr2R	17236444	intron	mbl +	chr2R	17239104	intron	mbl +	chr2R	17241765	intron	mbl +	chr2R_12_17235001	chr2R_17235001	CanS-SH
945	chr2R	17277161	17277170	chr2R	17277644	17277653	jockey	7	483	20.0	5.5	12.8	0.5	492	chr2R	17277161	intron	mbl +	chr2R	17277407	intron	mbl +	chr2R	17277653	intron	mbl +	chr2R_7_17275001	chr2R_17275001	CanS-SH
947	chr2R	17485886	17485946	chr2R	17490729	17490789	F-element	10	4843	5.0	13.5	9.2	1.0	4903	chr2R	17485886	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488338	intron	NT5E-2 +	chr2R	17490789	intron	NT5E-2 +	chr2R_10_17485001	chr2R_17485001	CanS-SH
952	chr2R	17782300	17782330	chr2R	17783578	17783608	pogo	11	1278	16.0	8.0	12.0	0.8	1308	chr2R	17782300	intergenic	CG33981 -,fab1 -	chr2R	17782954	intergenic	not near genes	chr2R	17783608	intergenic	mir-31a -	chr2R_11_17780001	chr2R_17780001	CanS-SH
953	chr2R	17783969	17783998	chr2R	17784285	17784314	pogo	7	316	15.5	9.0	12.2	0.5	345	chr2R	17783969	intergenic	mir-31a -	chr2R	17784142	intergenic	mir-31a -	chr2R	17784314	intergenic	mir-31a -	chr2R_7_17780001	chr2R_17780001	CanS-SH
954	chr2R	17798352	17798375	chr2R	17798906	17798926	297	8	554	7.5	14.5	11.0	0.7	574	chr2R	17798352	intron	Dhit +	chr2R	17798639	intron	Dhit +	chr2R	17798926	intron	Dhit +	chr2R_8_17795001	chr2R_17795001	CanS-SH
959	chr2R	18045608	18045648	chr2R	18046035	18046075	jockey	17	427	12.5	10.5	11.5	1.4	467	chr2R	18045608	intergenic	not near genes	chr2R	18045842	intergenic	not near genes	chr2R	18046075	intergenic	CG5767 -	chr2R_17_18045001	chr2R_18045001	CanS-SH
961	chr2R	18111630	18111659	chr2R	18115573	18115602	F-element	14	3943	16.0	18.0	17.0	0.8	3972	chr2R	18111630	intergenic	not near genes	chr2R	18113616	intergenic	not near genes	chr2R	18115602	intergenic	not near genes	chr2R_14_18110001	chr2R_18110001	CanS-SH
969	chr2R	18358324	18358365	chr2R	18372611	18372652	roo	11	14287	18.5	9.5	14.0	0.7	14328	chr2R	18358324	intergenic	not near genes	chr2R	18365488	intergenic	not near genes	chr2R	18372652	intergenic	not near genes	chr2R_11_18365001	chr2R_18365001	CanS-SH
979	chr2R	18487766	18487822	chr2R	18495292	18495348	blood	8	7526	5.5	6.5	6.0	1.1	7582	chr2R	18487766	intron	CG30116 -	chr2R	18491557	intron	CG30116 -	chr2R	18495348	intron	CG30116 -	chr2R_8_18490001	chr2R_18490001	CanS-SH
982	chr2R	18575726	18575761	chr2R	18581989	18582024	3S18	8	6263	9.0	7.5	8.2	0.9	6298	chr2R	18575726	intron	GEFmeso -	chr2R	18578875	intron	GEFmeso -	chr2R	18582024	intron	GEFmeso -	chr2R_8_18575001	chr2R_18575001	CanS-SH
983	chr2R	18590799	18590840	chr2R	18600026	18600067	roo	10	9227	5.5	9.5	7.5	1.2	9268	chr2R	18590799	intron	GEFmeso -	chr2R	18595433	intron	GEFmeso -	chr2R	18600067	intron	GEFmeso -	chr2R_10_18595001	chr2R_18595001	CanS-SH
1014	chr2R	19715798	19715832	chr2R	19723342	19723376	blood	11	7544	15.5	8.0	11.8	0.9	7578	chr2R	19715798	intergenic	not near genes	chr2R	19719587	intergenic	not near genes	chr2R	19723376	intergenic	not near genes	chr2R_11_19715001	chr2R_19715001	CanS-SH
1016	chr2R	19776533	19776566	chr2R	19779930	19779964	jockey	5	3397	11.5	7.5	9.5	0.5	3431	chr2R	19776533	intergenic	not near genes	chr2R	19778248	intergenic	not near genes	chr2R	19779964	intergenic	not near genes	chr2R_5_19775001	chr2R_19775001	CanS-SH
1017	chr2R	19914799	19914814	chr2R	19922286	19922301	mdg1	8	7487	14.0	7.0	10.5	0.7	7502	chr2R	19914799	intergenic	not near genes	chr2R	19918550	intergenic	not near genes	chr2R	19922301	intergenic	not near genes	chr2R_8_19915001	chr2R_19915001	CanS-SH
1018	chr2R	19957368	19957408	chr2R	19962645	19962685	copia	14	5277	11.5	8.0	9.8	1.3	5317	chr2R	19957368	intergenic	CG44623 +	chr2R	19960026	intergenic	not near genes	chr2R	19962685	intergenic	not near genes	chr2R_14_19960001	chr2R_19960001	CanS-SH
1019	chr2R	20069146	20069254	chr2R	20071872	20071966	opus	4	2716	0.0	5.5	2.8	1.1	2820	chr2R	20069146	intergenic	not near genes	chr2R	20070556	intergenic	not near genes	chr2R	20071966	intergenic	not near genes	chr2R_4_20070001	chr2R_20070001	CanS-SH
1024	chr2R	20368455	20368491	chr2R	20377693	20377729	roo	9	9238	14.0	15.5	14.8	0.6	9274	chr2R	20368455	intergenic	not near genes	chr2R	20373092	intergenic	not near genes	chr2R	20377729	intergenic	not near genes	chr2R_9_20370001	chr2R_20370001	CanS-SH
1034	chr2R	20739378	20739416	chr2R	20744221	20744259	F-element	13	4843	12.5	8.0	10.2	1.2	4881	chr2R	20739378	intron	dpr +	chr2R	20741818	intron	dpr +	chr2R	20744259	intron	dpr +	chr2R_13_20740001	chr2R_20740001	CanS-SH
1037	chr2R	20783239	20783273	chr2R	20788086	20788120	F-element	9	4847	15.0	7.5	11.2	0.7	4881	chr2R	20783239	intergenic	not near genes	chr2R	20785680	intergenic	not near genes	chr2R	20788120	intergenic	CG43666 -	chr2R_9_20785001	chr2R_20785001	CanS-SH
1045	chr2R	21151071	21151145	chr2R	21153758	21153853	opus	5	2695	0.0	8.5	4.2	1.0	2782	chr2R	21151071	exon	CG30389 -	chr2R	21152462	intron	CG30389 -	chr2R	21153853	intron	CG30389 -	chr2R_5_21150001	chr2R_21150001	CanS-SH
1064	chr2R	21738215	21738254	chr2R	21747450	21747488	roo	10	9235	8.5	8.0	8.2	1.1	9273	chr2R	21738215	intergenic	not near genes	chr2R	21742852	intergenic	not near genes	chr2R	21747488	intergenic	not near genes	chr2R_10_21740001	chr2R_21740001	CanS-SH
1065	chr2R	21753020	21753059	chr2R	21753580	21753619	roo	16	560	10.5	7.5	9.0	1.6	599	chr2R	21753020	intergenic	not near genes	chr2R	21753320	intergenic	not near genes	chr2R	21753619	intergenic	not near genes	chr2R_16_21750001	chr2R_21750001	CanS-SH
1068	chr2R	21809466	21809502	chr2R	21817781	21817817	roo	10	8315	22.0	14.0	18.0	0.5	8351	chr2R	21809466	intergenic	not near genes	chr2R	21813642	intergenic	not near genes	chr2R	21817817	intergenic	not near genes	chr2R_10_21810001	chr2R_21810001	CanS-SH
1094	chr2R	22349630	22349669	chr2R	22351489	22351528	jockey	9	1859	12.0	13.5	12.8	0.7	1898	chr2R	22349630	intron	Liprin-gamma -	chr2R	22350579	intron	Liprin-gamma -	chr2R	22351528	intron	Liprin-gamma -	chr2R_9_22350001	chr2R_22350001	CanS-SH
1100	chr2R	22465258	22465276	chr2R	22465526	22465544	BS	4	268	27.0	10.5	18.8	0.2	286	chr2R	22465258	intron	CG10384 +	chr2R	22465401	intron	CG10384 +	chr2R	22465544	intron	CG10384 +	chr2R_4_22465001	chr2R_22465001	CanS-SH
1103	chr2R	22525691	22525717	chr2R	22529321	22529347	jockey	7	3630	15.0	5.0	10.0	0.6	3656	chr2R	22525691	intron	px -	chr2R	22527519	intron	px -	chr2R	22529347	intron	px -	chr2R_7_22525001	chr2R_22525001	CanS-SH
1105	chr2R	22580362	22580442	chr2R	22586581	22586661	diver	22	6219	7.0	5.5	6.2	3.1	6299	chr2R	22580362	intron	dnr1 -	chr2R	22583512	intron	dnr1 -	chr2R	22586661	intron	dnr1 -	chr2R_22_22580001	chr2R_22580001	CanS-SH
1111	chr2R	22729387	22729468	chr2R	22729670	22729751	INE-1	17	283	6.0	7.0	6.5	2.3	364	chr2R	22729387	intron	jbug -	chr2R	22729569	intron	jbug -	chr2R	22729751	intron	jbug -	chr2R_17_22725001	chr2R_22725001	CanS-SH
1112	chr2R	22774900	22774942	chr2R	22775394	22775436	jockey	22	494	17.5	8.5	13.0	1.6	536	chr2R	22774900	intron	CG42260 -	chr2R	22775168	intron	CG42260 -	chr2R	22775436	intron	CG42260 -	chr2R_22_22775001	chr2R_22775001	CanS-SH
1118	chr2R	22842969	22843003	chr2R	22845006	22845040	flea	13	2037	16.0	13.0	14.5	0.8	2071	chr2R	22842969	3` UTR	CG9826 +	chr2R	22844004	intergenic	not near genes	chr2R	22845040	intergenic	not near genes	chr2R_13_22840001	chr2R_22840001	CanS-SH
1123	chr2R	22958729	22958762	chr2R	22963891	22963924	flea	9	5162	10.5	6.5	8.5	0.9	5195	chr2R	22958729	intergenic	not near genes	chr2R	22961326	intergenic	not near genes	chr2R	22963924	intergenic	not near genes	chr2R_9_22960001	chr2R_22960001	CanS-SH
1139	chr2R	23402575	23402603	chr2R	23407697	23407725	flea	9	5135	11.5	8.0	9.8	0.8	5150	chr2R	23402575	intergenic	CG3520 -	chr2R	23405150	intergenic	not near genes	chr2R	23407725	intergenic	not near genes	chr2R_9_23405001	chr2R_23405001	CanS-SH
1149	chr2R	23529513	23529541	chr2R	23537164	23537192	412	9	7651	13.5	10.0	11.8	0.7	7679	chr2R	23529513	exon	bw -	chr2R	23533352	intron	bw -	chr2R	23537192	exon	bw -	chr2R_9_23530001	chr2R_23530001	CanS-SH
1158	chr2R	23914235	23914276	chr2R	23921934	23921975	412	16	7699	13.0	11.0	12.0	1.2	7740	chr2R	23914235	exon	kcc +	chr2R	23918105	intron	kcc +	chr2R	23921975	exon	kcc +	chr2R_16_23915001	chr2R_23915001	CanS-SH
1160	chr2R	24177169	24177214	chr2R	24184729	24184774	412	20	7560	28.0	8.5	18.2	1.0	7605	chr2R	24177169	3` UTR	Nop60B +	chr2R	24180972	intron	Nop60B +	chr2R	24184774	3` UTR	Nop60B +	chr2R_20_24180001	chr2R_24180001	CanS-SH
1166	chr2R	24353365	24353391	chr2R	24361802	24361828	roo	9	8437	16.0	8.5	12.2	0.7	8463	chr2R	24353365	intron,intron	bs +,CR44811 -	chr2R	24357596	intron,intron	bs +,CR44811 -	chr2R	24361828	intron,intron	bs +,CR44811 -	chr2R_9_24355001	chr2R_24355001	CanS-SH
1174	chr2R	24647498	24647557	chr2R	24655144	24655189	412	11	7642	10.5	5.5	8.0	1.2	7691	chr2R	24647498	intergenic	not near genes	chr2R	24651344	intergenic	not near genes	chr2R	24655189	intergenic	not near genes	chr2R_11_24650001	chr2R_24650001	CanS-SH
1175	chr2R	24727819	24727858	chr2R	24735402	24735441	mdg1	10	7583	15.5	5.5	10.5	0.9	7622	chr2R	24727819	intron	Mid1 -	chr2R	24731630	intron	Mid1 -	chr2R	24735441	intron	Mid1 -	chr2R_10_24730001	chr2R_24730001	CanS-SH
1176	chr2R	24763545	24763589	chr2R	24765596	24765640	G2	13	2051	8.5	5.5	7.0	1.6	2095	chr2R	24763545	exon	CG3894 +	chr2R	24764592	intron	CG3894 +	chr2R	24765640	exon	CG3894 +	chr2R_13_24760001	chr2R_24760001	CanS-SH
1187	chr2R	25141600	25141629	chr2R	25159365	25159394	roo	8	17765	13.5	10.5	12.0	0.6	17794	chr2R	25141600	intergenic	not near genes	chr2R	25150497	intergenic	not near genes	chr2R	25159394	intergenic	not near genes	chr2R_8_25150001	chr2R_25150001	CanS-SH
1194	chr3L	110151	110188	chr3L	119393	119430	roo	8	9242	14.5	9.0	11.8	0.6	9279	chr3L	110151	intergenic	not near genes	chr3L	114790	intergenic	not near genes	chr3L	119430	intergenic	not near genes	chr3L_8_110001	chr3L_110001	CanS-SH
1197	chr3L	402655	402660	chr3L	409783	409788	297	4	7128	15.0	16.0	15.5	0.2	7133	chr3L	402655	intergenic	not near genes	chr3L	406222	intergenic	not near genes	chr3L	409788	intergenic	not near genes	chr3L_4_405001	chr3L_405001	CanS-SH
1209	chr3L	789853	789892	chr3L	790413	790452	roo	11	560	17.0	9.5	13.2	0.8	599	chr3L	789853	intergenic	not near genes	chr3L	790152	intergenic	not near genes	chr3L	790452	intergenic	not near genes	chr3L_11_790001	chr3L_790001	CanS-SH
1212	chr3L	857935	857968	chr3L	866491	866524	Tirant	7	8556	17.0	7.5	12.2	0.5	8589	chr3L	857935	intergenic	not near genes	chr3L	862230	intergenic	not near genes	chr3L	866524	5` UTR	CG12502 +	chr3L_7_860001	chr3L_860001	CanS-SH
1215	chr3L	925113	925148	chr3L	932614	932649	mdg1	10	7501	14.0	9.0	11.5	0.8	7536	chr3L	925113	intron	Glut1 +	chr3L	928881	intron	Glut1 +	chr3L	932649	intron	Glut1 +	chr3L_10_925001	chr3L_925001	CanS-SH
1217	chr3L	939715	939743	chr3L	940911	940939	jockey	7	1196	22.0	4.5	13.2	0.5	1224	chr3L	939715	intron	Glut1 +	chr3L	940327	intron	Glut1 +	chr3L	940939	intron	Glut1 +	chr3L_7_940001	chr3L_940001	CanS-SH
1225	chr3L	1047287	1047325	chr3L	1055173	1055212	412	7	7887	11.0	3.5	7.2	0.9	7925	chr3L	1047287	intron	bab1 -	chr3L	1051250	intron	bab1 -	chr3L	1055212	intron	bab1 -	chr3L_7_1050001	chr3L_1050001	CanS-SH
1229	chr3L	1154060	1154153	chr3L	1163288	1163378	roo	17	9228	4.5	4.0	4.2	3.3	9318	chr3L	1154060	intron	bab2 -	chr3L	1158719	intron	bab2 -	chr3L	1163378	intron	bab2 -	chr3L_17_1155001	chr3L_1155001	CanS-SH
1232	chr3L	1219527	1219571	chr3L	1227334	1227379	412	17	7808	16.5	7.5	12.0	1.3	7852	chr3L	1219527	intron	mwh +	chr3L	1223453	intron	mwh +	chr3L	1227379	intron	mwh +	chr3L_17_1220001	chr3L_1220001	CanS-SH
1240	chr3L	1485662	1485688	chr3L	1486908	1486934	1360	14	1246	13.0	10.0	11.5	1.1	1272	chr3L	1485662	intron	stet -	chr3L	1486298	intron	stet -	chr3L	1486934	intron	stet -	chr3L_14_1485001	chr3L_1485001	CanS-SH
1242	chr3L	1505939	1505979	chr3L	1513611	1513651	17.6	15	7672	23.0	9.5	16.2	0.9	7712	chr3L	1505939	intron,intron	Psa +,cue -	chr3L	1509795	intron,intron	Psa +,cue -	chr3L	1513651	intron,intron	Psa +,cue -	chr3L_15_1505001	chr3L_1505001	CanS-SH
1248	chr3L	1740795	1740827	chr3L	1741113	1741145	pogo	11	318	19.0	11.0	15.0	0.7	350	chr3L	1740795	intron	Gk +	chr3L	1740970	intron	Gk +	chr3L	1741145	intron	Gk +	chr3L_11_1740001	chr3L_1740001	CanS-SH
1256	chr3L	2108180	2108219	chr3L	2113459	2113498	copia	10	5279	13.5	5.5	9.5	1.0	5318	chr3L	2108180	intron	sls -	chr3L	2110839	intron	sls -	chr3L	2113498	intron	sls -	chr3L_10_2110001	chr3L_2110001	CanS-SH
1271	chr3L	2447440	2447485	chr3L	2456671	2456716	roo	15	9231	10.0	5.0	7.5	1.8	9276	chr3L	2447440	intron	CG45186 +	chr3L	2452078	intron	CG45186 +	chr3L	2456716	intron	CG45186 +	chr3L_15_2450001	chr3L_2450001	CanS-SH
1279	chr3L	2927778	2927817	chr3L	2936130	2936169	Tirant	18	8352	14.0	9.5	11.8	1.4	8391	chr3L	2927778	intron	Shab +	chr3L	2931974	intron	Shab +	chr3L	2936169	intron	Shab +	chr3L_18_2930001	chr3L_2930001	CanS-SH
1282	chr3L	3040258	3040288	chr3L	3042122	3042152	S-element	8	1864	17.0	6.5	11.8	0.6	1894	chr3L	3040258	3` UTR	CG2162 +	chr3L	3041205	intergenic	not near genes	chr3L	3042152	intergenic	Jafrac2 +	chr3L_8_3040001	chr3L_3040001	CanS-SH
1283	chr3L	3051679	3051722	chr3L	3051996	3052042	pogo	6	318	12.0	6.0	9.0	0.6	363	chr3L	3051679	3` UTR	CG32485 +	chr3L	3051860	intergenic	CG32485 +	chr3L	3052042	intergenic	CG32485 +,CG1271 +	chr3L_6_3050001	chr3L_3050001	CanS-SH
1286	chr3L	3061219	3061256	chr3L	3069877	3069914	Tirant	18	8658	9.5	10.0	9.8	1.7	8695	chr3L	3061219	intron	CG32486 -	chr3L	3065566	intron	CG32486 -	chr3L	3069914	intron	CG32486 -	chr3L_18_3065001	chr3L_3065001	CanS-SH
1288	chr3L	3281378	3281420	chr3L	3281949	3281991	Doc	16	571	10.5	9.0	9.8	1.5	613	chr3L	3281378	intron	CG12017 +	chr3L	3281684	intron	CG12017 +	chr3L	3281991	intron	CG12017 +	chr3L_16_3280001	chr3L_3280001	CanS-SH
1295	chr3L	3475022	3475044	chr3L	3475541	3475563	jockey	5	519	17.0	10.0	13.5	0.3	541	chr3L	3475022	intron	CG42324 +	chr3L	3475292	intron	CG42324 +	chr3L	3475563	intron	CG42324 +	chr3L_5_3475001	chr3L_3475001	CanS-SH
1300	chr3L	3601232	3601274	chr3L	3606618	3606660	copia	9	5386	9.5	7.0	8.2	1.0	5428	chr3L	3601232	intron	Eip63E +	chr3L	3603946	intron	Eip63E +	chr3L	3606660	intron	Eip63E +	chr3L_9_3600001	chr3L_3600001	CanS-SH
1310	chr3L	3833676	3833762	chr3L	3833992	3834078	pogo	6	316	7.0	3.0	5.0	1.0	402	chr3L	3833676	intron	enc +	chr3L	3833877	intron	enc +	chr3L	3834078	intron	enc +	chr3L_6_3830001	chr3L_3830001	CanS-SH
1320	chr3L	4901059	4901105	chr3L	4907324	4907370	diver	13	6265	1.5	3.0	2.2	4.1	6311	chr3L	4901059	intergenic	CG13704 +	chr3L	4904214	intergenic	not near genes	chr3L	4907370	intergenic	not near genes	chr3L_13_4900001	chr3L_4900001	CanS-SH
1321	chr3L	5045395	5045431	chr3L	5050251	5050287	Doc	7	4856	11.5	9.5	10.5	0.6	4892	chr3L	5045395	5` UTR	Con -	chr3L	5047841	intron	Con -	chr3L	5050287	intron	Con -	chr3L_7_5045001	chr3L_5045001	CanS-SH
1326	chr3L	5299098	5299172	chr3L	5306599	5306673	Quasimodo	12	7501	11.5	0.0	5.8	1.8	7575	chr3L	5299098	intergenic	not near genes	chr3L	5302886	intergenic	not near genes	chr3L	5306673	intergenic	not near genes	chr3L_12_5300001	chr3L_5300001	CanS-SH
1335	chr3L	5537652	5537685	chr3L	5538069	5538102	jockey	15	417	20.0	9.0	14.5	1.0	450	chr3L	5537652	intergenic	not near genes	chr3L	5537877	intergenic	not near genes	chr3L	5538102	intergenic	CG10625 -	chr3L_15_5535001	chr3L_5535001	CanS-SH
1341	chr3L	5909970	5910009	chr3L	5910286	5910325	pogo	14	316	19.5	13.0	16.2	0.8	355	chr3L	5909970	intron	CG13288 +	chr3L	5910148	intron	CG13288 +	chr3L	5910325	intron	CG13288 +	chr3L_14_5910001	chr3L_5910001	CanS-SH
1345	chr3L	6001619	6001662	chr3L	6004394	6004437	jockey	12	2775	3.5	7.5	5.5	1.8	2818	chr3L	6001619	intron	PVRAP +	chr3L	6003028	intron	PVRAP +	chr3L	6004437	intron	PVRAP +	chr3L_12_6000001	chr3L_6000001	CanS-SH
1347	chr3L	6040263	6040301	chr3L	6042721	6042759	Doc	13	2458	6.0	7.0	6.5	1.7	2496	chr3L	6040263	intergenic	Jon65Aiv +	chr3L	6041511	intergenic	not near genes	chr3L	6042759	intergenic	not near genes	chr3L_13_6040001	chr3L_6040001	CanS-SH
1353	chr3L	6220856	6220889	chr3L	6230083	6230116	roo	11	9227	17.0	8.5	12.8	0.8	9260	chr3L	6220856	5` UTR	pncr008:3L +	chr3L	6225486	intergenic	not near genes	chr3L	6230116	intergenic	not near genes	chr3L_11_6225001	chr3L_6225001	CanS-SH
1354	chr3L	6334946	6334975	chr3L	6335492	6335521	297	6	546	11.0	12.0	11.5	0.5	575	chr3L	6334946	intron	CG13300 -	chr3L	6335234	intron	CG13300 -	chr3L	6335521	intron	CG13300 -	chr3L_6_6335001	chr3L_6335001	CanS-SH
1359	chr3L	6620537	6620556	chr3L	6621052	6621071	Rt1c	7	515	23.0	12.0	17.5	0.4	534	chr3L	6620537	intergenic	not near genes	chr3L	6620804	intergenic	not near genes	chr3L	6621071	intergenic	not near genes	chr3L_7_6620001	chr3L_6620001	CanS-SH
1363	chr3L	6781049	6781154	chr3L	6783138	6783239	Doc	14	2086	4.5	0.5	2.5	4.0	2190	chr3L	6781049	intergenic	not near genes	chr3L	6782144	intergenic	not near genes	chr3L	6783239	intergenic	not near genes	chr3L_14_6780001	chr3L_6780001	CanS-SH
1367	chr3L	6855873	6855904	chr3L	6860732	6860763	Doc	7	4859	6.5	7.5	7.0	0.9	4890	chr3L	6855873	intergenic	not near genes	chr3L	6858318	intergenic	not near genes	chr3L	6860763	intergenic	not near genes	chr3L_7_6855001	chr3L_6855001	CanS-SH
1370	chr3L	6887465	6887495	chr3L	6895032	6895062	roo	9	7567	17.0	13.0	15.0	0.6	7597	chr3L	6887465	intergenic	not near genes	chr3L	6891264	intergenic	not near genes	chr3L	6895062	intergenic	not near genes	chr3L_9_6890001	chr3L_6890001	CanS-SH
1388	chr3L	7377249	7377345	chr3L	7380429	7380519	297	14	3179	6.5	5.5	6.0	2.0	3270	chr3L	7377249	intron	SMSr -	chr3L	7378884	intron	SMSr -	chr3L	7380519	intron	SMSr -	chr3L_14_7375001	chr3L_7375001	CanS-SH
1390	chr3L	7498696	7498729	chr3L	7503548	7503581	F-element	9	4852	15.5	10.0	12.8	0.7	4885	chr3L	7498696	5` UTR	CG8539 -	chr3L	7501138	intergenic	not near genes	chr3L	7503581	intergenic	not near genes	chr3L_9_7500001	chr3L_7500001	CanS-SH
1399	chr3L	7793651	7793690	chr3L	7800778	7800817	297	13	7127	20.0	12.0	16.0	0.8	7166	chr3L	7793651	intron	CG32369 -	chr3L	7797234	intron	CG32369 -	chr3L	7800817	intron	CG32369 -	chr3L_13_7795001	chr3L_7795001	CanS-SH
1406	chr3L	7916773	7916806	chr3L	7926019	7926052	roo	12	9246	16.5	9.0	12.8	0.9	9279	chr3L	7916773	3` UTR	syd -	chr3L	7921412	intron	syd -	chr3L	7926052	3` UTR	syd -	chr3L_12_7920001	chr3L_7920001	CanS-SH
1408	chr3L	7985303	7985343	chr3L	7987706	7987746	NOF	14	2403	19.5	8.0	13.8	0.9	2443	chr3L	7985303	intron	nmo +	chr3L	7986524	intron	nmo +	chr3L	7987746	intron	nmo +	chr3L_14_7985001	chr3L_7985001	CanS-SH
1415	chr3L	8233517	8233535	chr3L	8238854	8238872	Rt1a	7	5337	14.5	14.0	14.2	0.5	5355	chr3L	8233517	intron	CG7213 -	chr3L	8236194	intron	CG7213 -	chr3L	8238872	intron,intron	CG7213 -,Dscam4 +	chr3L_7_8235001	chr3L_8235001	CanS-SH
1423	chr3L	8481708	8481746	chr3L	8490942	8490980	roo	15	9234	12.5	7.5	10.0	1.4	9272	chr3L	8481708	intron	CG43163 -	chr3L	8486344	intron	CG43163 -	chr3L	8490980	intron	CG43163 -	chr3L_15_8485001	chr3L_8485001	CanS-SH
1425	chr3L	8498223	8498259	chr3L	8505762	8505798	blood	13	7539	0.0	8.0	4.0	2.6	7575	chr3L	8498223	intron	CG43163 -	chr3L	8502010	intron	CG43163 -	chr3L	8505798	intron	CG43163 -	chr3L_13_8500001	chr3L_8500001	CanS-SH
1427	chr3L	8791214	8791247	chr3L	8796709	8796742	I-element	17	5495	16.0	13.5	14.8	1.1	5528	chr3L	8791214	exon	Fhos +	chr3L	8793978	intron	Fhos +	chr3L	8796742	intron	Fhos +	chr3L_17_8790001	chr3L_8790001	CanS-SH
1430	chr3L	9076861	9076904	chr3L	9084496	9084539	412	12	7635	11.5	7.0	9.2	1.2	7678	chr3L	9076861	exon	Tequila +	chr3L	9080700	intron	Tequila +	chr3L	9084539	exon	Tequila +	chr3L_12_9080001	chr3L_9080001	CanS-SH
1432	chr3L	9130493	9130534	chr3L	9134329	9134370	412	10	3836	13.0	7.0	10.0	0.9	3877	chr3L	9130493	intergenic	bol -	chr3L	9132432	intergenic	not near genes	chr3L	9134370	intergenic	Dhpr +	chr3L_10_9130001	chr3L_9130001	CanS-SH
1433	chr3L	9164637	9164659	chr3L	9166179	9166201	hobo	12	1542	23.5	0.0	11.8	0.9	1564	chr3L	9164637	intron	Rdl -	chr3L	9165419	intron	Rdl -	chr3L	9166201	intron	Rdl -	chr3L_12_9165001	chr3L_9165001	CanS-SH
1435	chr3L	9219189	9219216	chr3L	9219935	9219963	jockey	7	747	12.5	8.5	10.5	0.6	774	chr3L	9219189	intergenic	not near genes	chr3L	9219576	intergenic	not near genes	chr3L	9219963	intergenic	not near genes	chr3L_7_9215001	chr3L_9215001	CanS-SH
1437	chr3L	9270555	9270647	chr3L	9278381	9278473	roo	17	7826	6.5	4.5	5.5	2.6	7918	chr3L	9270555	intron	GluRIB +	chr3L	9274514	intron	GluRIB +	chr3L	9278473	exon	GluRIB +	chr3L_17_9270001	chr3L_9270001	CanS-SH
1443	chr3L	9443501	9443532	chr3L	9445352	9445383	S-element	6	1851	5.0	6.0	5.5	0.9	1882	chr3L	9443501	intron	CG33926 +	chr3L	9444442	intron	CG33926 +	chr3L	9445383	intron	CG33926 +	chr3L_6_9440001	chr3L_9440001	CanS-SH
1444	chr3L	9501639	9501732	chr3L	9502200	9502270	roo	7	555	5.5	0.0	2.8	1.8	631	chr3L	9501639	intron	path -	chr3L	9501954	intron	path -	chr3L	9502270	intron	path -	chr3L_7_9500001	chr3L_9500001	CanS-SH
1448	chr3L	9526430	9526458	chr3L	9528185	9528213	Doc	15	1755	14.0	8.5	11.2	1.2	1783	chr3L	9526430	intergenic	not near genes	chr3L	9527322	intergenic	not near genes	chr3L	9528213	intergenic	not near genes	chr3L_15_9525001	chr3L_9525001	CanS-SH
1450	chr3L	9533698	9533767	chr3L	9541333	9541402	412	5	7635	9.5	11.5	10.5	0.4	7704	chr3L	9533698	intergenic	not near genes	chr3L	9537550	intergenic	not near genes	chr3L	9541402	intergenic	not near genes	chr3L_5_9535001	chr3L_9535001	CanS-SH
1451	chr3L	9571845	9571881	chr3L	9572268	9572304	jockey	10	423	14.5	9.5	12.0	0.8	459	chr3L	9571845	intron	CG42673 +	chr3L	9572074	intron	CG42673 +	chr3L	9572304	intron	CG42673 +	chr3L_10_9570001	chr3L_9570001	CanS-SH
1452	chr3L	9575848	9575891	chr3L	9581001	9581045	jockey	11	5153	5.5	8.0	6.8	1.4	5197	chr3L	9575848	intron	CG42673 +	chr3L	9578446	intron	CG42673 +	chr3L	9581045	intron	CG42673 +	chr3L_11_9575001	chr3L_9575001	CanS-SH
1464	chr3L	9929597	9929638	chr3L	9938454	9938495	roo	16	8857	20.0	7.5	13.8	1.1	8898	chr3L	9929597	intron	CG34356 +	chr3L	9934046	intron	CG34356 +	chr3L	9938495	intron	CG34356 +	chr3L_16_9930001	chr3L_9930001	CanS-SH
1482	chr3L	10414870	10414900	chr3L	10417315	10417345	Doc	7	2445	10.5	7.0	8.8	0.7	2475	chr3L	10414870	intergenic	CG12362 +	chr3L	10416108	intergenic	not near genes	chr3L	10417345	intergenic	not near genes	chr3L_7_10415001	chr3L_10415001	CanS-SH
1507	chr3L	11086988	11087023	chr3L	11088851	11088886	S-element	11	1863	18.0	6.5	12.2	0.8	1898	chr3L	11086988	intron	JIL-1 -	chr3L	11087937	intron	JIL-1 -	chr3L	11088886	intron	JIL-1 -	chr3L_11_11085001	chr3L_11085001	CanS-SH
1515	chr3L	11264410	11264437	chr3L	11271437	11271464	17.6	7	7027	16.0	13.0	14.5	0.5	7054	chr3L	11264410	intergenic	not near genes	chr3L	11267937	intergenic	not near genes	chr3L	11271464	intergenic	not near genes	chr3L_7_11265001	chr3L_11265001	CanS-SH
1516	chr3L	11277395	11277412	chr3L	11278471	11278488	Rt1a	8	1076	1.5	12.0	6.8	1.0	1093	chr3L	11277395	intergenic	not near genes	chr3L	11277942	intergenic	not near genes	chr3L	11278488	intergenic	not near genes	chr3L_8_11275001	chr3L_11275001	CanS-SH
1519	chr3L	11329633	11329669	chr3L	11332913	11332949	jockey	15	3280	4.5	14.5	9.5	1.4	3316	chr3L	11329633	intergenic	not near genes	chr3L	11331291	intergenic	not near genes	chr3L	11332949	intergenic	not near genes	chr3L_15_11330001	chr3L_11330001	CanS-SH
1528	chr3L	11564714	11564725	chr3L	11572413	11572425	412	6	7700	17.5	3.0	10.2	0.5	7711	chr3L	11564714	5` UTR	CG33267 +	chr3L	11568570	intron	CG33267 +	chr3L	11572425	exon	CG33267 +	chr3L_6_11565001	chr3L_11565001	CanS-SH
1534	chr3L	11723026	11723058	chr3L	11727896	11727928	Doc	10	4870	17.0	13.5	15.2	0.6	4902	chr3L	11723026	3` UTR	Bmcp +	chr3L	11725477	intron	Bmcp +	chr3L	11727928	3` UTR	Bmcp +	chr3L_10_11725001	chr3L_11725001	CanS-SH
1570	chr3L	12874858	12874906	chr3L	12877225	12877273	jockey	17	2367	11.5	8.0	9.8	1.6	2415	chr3L	12874858	intergenic	not near genes	chr3L	12876066	intergenic	not near genes	chr3L	12877273	intergenic	not near genes	chr3L_17_12875001	chr3L_12875001	CanS-SH
1572	chr3L	12929657	12929668	chr3L	12930048	12930059	INE-1	6	391	0.0	3.5	1.8	2.1	402	chr3L	12929657	intergenic	not near genes	chr3L	12929858	intergenic	not near genes	chr3L	12930059	intergenic	not near genes	chr3L_6_12925001	chr3L_12925001	CanS-SH
1573	chr3L	12957728	12957764	chr3L	12962285	12962321	copia	9	4557	9.5	10.5	10.0	0.8	4593	chr3L	12957728	intergenic	not near genes	chr3L	12960024	intergenic	not near genes	chr3L	12962321	intergenic	not near genes	chr3L_9_12960001	chr3L_12960001	CanS-SH
1591	chr3L	13525092	13525118	chr3L	13532963	13532989	roo	15	7871	16.5	8.0	12.2	1.1	7897	chr3L	13525092	intergenic	not near genes	chr3L	13529040	intergenic	not near genes	chr3L	13532989	intergenic	not near genes	chr3L_15_13525001	chr3L_13525001	CanS-SH
1593	chr3L	13574572	13574589	chr3L	13580157	13580174	Rt1c	5	5585	11.0	9.5	10.2	0.4	5602	chr3L	13574572	intron	bru-3 -	chr3L	13577373	intron	bru-3 -	chr3L	13580174	intron	bru-3 -	chr3L_5_13575001	chr3L_13575001	CanS-SH
1599	chr3L	13804482	13804517	chr3L	13822843	13822878	roo	12	18361	15.5	10.0	12.8	0.9	18396	chr3L	13804482	intergenic	not near genes	chr3L	13813680	intergenic	not near genes	chr3L	13822878	intergenic	not near genes	chr3L_12_13810001	chr3L_13810001	CanS-SH
1616	chr3L	14245512	14245574	chr3L	14245681	14245743	1360	18	169	8.5	10.0	9.2	1.8	231	chr3L	14245512	3` UTR	CR44561 -	chr3L	14245628	3` UTR	CR44561 -	chr3L	14245743	intergenic	CR44561 -,CR44560 +	chr3L_18_14245001	chr3L_14245001	CanS-SH
1617	chr3L	14267334	14267374	chr3L	14271821	14271861	F-element	15	4487	8.0	0.0	4.0	3.0	4527	chr3L	14267334	intergenic	not near genes	chr3L	14269598	intergenic	not near genes	chr3L	14271861	intergenic	not near genes	chr3L_15_14265001	chr3L_14265001	CanS-SH
1619	chr3L	14295915	14295956	chr3L	14296476	14296517	roo	13	561	16.5	8.0	12.2	1.0	602	chr3L	14295915	intron	fz +	chr3L	14296216	intron	fz +	chr3L	14296517	intron	fz +	chr3L_13_14295001	chr3L_14295001	CanS-SH
1620	chr3L	14311970	14311990	chr3L	14316859	14316879	X-element	5	4889	9.0	10.0	9.5	0.5	4909	chr3L	14311970	exon	fz +	chr3L	14314424	intron	fz +	chr3L	14316879	intron	fz +	chr3L_5_14310001	chr3L_14310001	CanS-SH
1627	chr3L	14468391	14468416	chr3L	14473672	14473697	copia	5	5281	21.0	7.0	14.0	0.3	5306	chr3L	14468391	intron	bbg -	chr3L	14471044	intron	bbg -	chr3L	14473697	intron	bbg -	chr3L_5_14470001	chr3L_14470001	CanS-SH
1629	chr3L	14524293	14524353	chr3L	14529133	14529193	F-element	16	4840	7.0	6.5	6.8	2.1	4900	chr3L	14524293	intron	bbg -	chr3L	14526743	intron	bbg -	chr3L	14529193	intron	bbg -	chr3L_16_14525001	chr3L_14525001	CanS-SH
1635	chr3L	14721124	14721160	chr3L	14723042	14723078	Rt1c	12	1918	12.5	8.0	10.2	1.1	1954	chr3L	14721124	intron	ome +	chr3L	14722101	intron	ome +	chr3L	14723078	intron	ome +	chr3L_12_14720001	chr3L_14720001	CanS-SH
1636	chr3L	14725506	14725536	chr3L	14728594	14728624	Doc	6	3088	13.0	7.5	10.2	0.5	3118	chr3L	14725506	intron	ome +	chr3L	14727065	intron	ome +	chr3L	14728624	intron	ome +	chr3L_6_14725001	chr3L_14725001	CanS-SH
1641	chr3L	14825088	14825155	chr3L	14832890	14832957	Stalker2	6	7802	5.5	13.5	9.5	0.6	7869	chr3L	14825088	intron	CG17839 +	chr3L	14829022	intron	CG17839 +	chr3L	14832957	intron	CG17839 +	chr3L_6_14825001	chr3L_14825001	CanS-SH
1651	chr3L	15084985	15085023	chr3L	15086226	15086264	1360	8	1241	13.0	7.0	10.0	0.7	1279	chr3L	15084985	intron	cp309 -	chr3L	15085624	intron	cp309 -	chr3L	15086264	intron	cp309 -	chr3L_8_15085001	chr3L_15085001	CanS-SH
1662	chr3L	15295707	15295739	chr3L	15298625	15298656	gypsy5	12	2918	21.0	9.0	15.0	0.8	2949	chr3L	15295707	intergenic	not near genes	chr3L	15297182	intergenic	not near genes	chr3L	15298656	intergenic	Best4 +	chr3L_12_15295001	chr3L_15295001	CanS-SH
1669	chr3L	15423694	15423740	chr3L	15426613	15426659	opus	14	2919	10.5	7.0	8.8	1.4	2965	chr3L	15423694	intergenic	not near genes	chr3L	15425176	intergenic	not near genes	chr3L	15426659	intergenic	not near genes	chr3L_14_15425001	chr3L_15425001	CanS-SH
1683	chr3L	15899175	15899198	chr3L	15899817	15899840	jockey	9	642	12.0	9.5	10.8	0.8	665	chr3L	15899175	intergenic	pHCl -	chr3L	15899508	intergenic	pHCl -	chr3L	15899840	intergenic	sff -	chr3L_9_15895001	chr3L_15895001	CanS-SH
1684	chr3L	15929178	15929227	chr3L	15938400	15938449	roo	4	9222	5.5	11.0	8.2	0.4	9271	chr3L	15929178	intron	Pka-C3 -	chr3L	15933814	intron	Pka-C3 -	chr3L	15938449	intron	Pka-C3 -	chr3L_4_15930001	chr3L_15930001	CanS-SH
1693	chr3L	16184053	16184083	chr3L	16188947	16188977	X-element	13	4894	16.5	12.0	14.2	0.9	4924	chr3L	16184053	intergenic	not near genes	chr3L	16186515	intergenic	not near genes	chr3L	16188977	intergenic	not near genes	chr3L_13_16185001	chr3L_16185001	CanS-SH
1700	chr3L	16443776	16443824	chr3L	16446191	16446239	Doc	20	2415	18.0	6.0	12.0	1.5	2463	chr3L	16443776	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445008	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446239	intron,intron	CG33158 +,dsx-c73A -	chr3L_20_16445001	chr3L_16445001	CanS-SH
1704	chr3L	16493913	16493955	chr3L	16494505	16494546	jockey	12	591	12.0	5.0	8.5	1.3	633	chr3L	16493913	intron,exon,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494230	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494546	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_12_16490001	chr3L_16490001	CanS-SH
1710	chr3L	16616448	16616488	chr3L	16621851	16621891	297	18	5403	18.5	8.0	13.2	1.3	5443	chr3L	16616448	3` UTR	Abl -	chr3L	16619170	3` UTR	Abl -	chr3L	16621891	3` UTR	Abl -	chr3L_18_16615001	chr3L_16615001	CanS-SH
1713	chr3L	16683965	16683996	chr3L	16689261	16689292	copia	7	5296	23.5	8.0	15.8	0.4	5327	chr3L	16683965	intron,intron	Lasp -,CG43954 -	chr3L	16686628	intron,intron	Lasp -,CG43954 -	chr3L	16689292	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_7_16685001	chr3L_16685001	CanS-SH
1724	chr3L	16945672	16945705	chr3L	16954900	16954933	roo	16	9228	12.5	9.5	11.0	1.3	9261	chr3L	16945672	exon	Obp73a +	chr3L	16950302	intergenic	not near genes	chr3L	16954933	5` UTR	Nc73EF +	chr3L_16_16950001	chr3L_16950001	CanS-SH
1727	chr3L	17034872	17034913	chr3L	17035130	17035176	G2	8	260	10.0	6.0	8.0	0.9	304	chr3L	17034872	intergenic	not near genes	chr3L	17035024	intergenic	not near genes	chr3L	17035176	intergenic	beg +	chr3L_8_17035001	chr3L_17035001	CanS-SH
1728	chr3L	17084939	17084979	chr3L	17094163	17094203	roo	15	9224	21.0	13.0	17.0	0.8	9264	chr3L	17084939	intron	Rbp6 -	chr3L	17089571	intron	Rbp6 -	chr3L	17094203	intron	Rbp6 -	chr3L_15_17085001	chr3L_17085001	CanS-SH
1735	chr3L	17516919	17516943	chr3L	17524552	17524576	412	10	7633	17.5	8.5	13.0	0.7	7657	chr3L	17516919	intron	CG7564 +	chr3L	17520748	intron	CG7564 +	chr3L	17524576	3` UTR	CG7564 +	chr3L_10_17520001	chr3L_17520001	CanS-SH
1740	chr3L	17730790	17730829	chr3L	17738195	17738234	mdg1	10	7405	14.5	13.5	14.0	0.7	7444	chr3L	17730790	intron	Ccn +	chr3L	17734512	intron	Ccn +	chr3L	17738234	intron	Ccn +	chr3L_10_17730001	chr3L_17730001	CanS-SH
1744	chr3L	17799749	17799788	chr3L	17801611	17801650	S-element	14	1862	18.0	7.5	12.8	1.0	1901	chr3L	17799749	intron	NUCB1 -	chr3L	17800700	intron	NUCB1 -	chr3L	17801650	intron	NUCB1 -	chr3L_14_17800001	chr3L_17800001	CanS-SH
1747	chr3L	17918310	17918347	chr3L	17921188	17921225	opus	8	2878	18.5	10.5	14.5	0.5	2915	chr3L	17918310	intergenic	not near genes	chr3L	17919768	intergenic	not near genes	chr3L	17921225	intergenic	not near genes	chr3L_8_17915001	chr3L_17915001	CanS-SH
1755	chr3L	18047641	18047688	chr3L	18056773	18056820	roo	19	9132	0.0	5.0	2.5	5.4	9179	chr3L	18047641	intron	Eip75B -	chr3L	18052230	intron	Eip75B -	chr3L	18056820	intron	Eip75B -	chr3L_19_18050001	chr3L_18050001	CanS-SH
1776	chr3L	18506085	18506100	chr3L	18509623	18509638	F-element	8	3538	16.5	12.0	14.2	0.5	3553	chr3L	18506085	intergenic	not near genes	chr3L	18507862	intergenic	not near genes	chr3L	18509638	intergenic	not near genes	chr3L_8_18505001	chr3L_18505001	CanS-SH
1777	chr3L	18528569	18528605	chr3L	18537805	18537841	roo	12	9236	18.0	9.0	13.5	0.8	9272	chr3L	18528569	intergenic	not near genes	chr3L	18533205	intergenic	not near genes	chr3L	18537841	intergenic	not near genes	chr3L_12_18530001	chr3L_18530001	CanS-SH
1782	chr3L	18593884	18593981	chr3L	18595939	18596034	Doc	8	2055	5.5	0.0	2.8	2.1	2150	chr3L	18593884	intergenic	term -	chr3L	18594959	intergenic	not near genes	chr3L	18596034	intergenic	CR45389 +	chr3L_8_18590001	chr3L_18590001	CanS-SH
1785	chr3L	18710696	18710737	chr3L	18718723	18718764	Stalker2	13	8027	21.5	8.5	15.0	0.8	8068	chr3L	18710696	intergenic	not near genes	chr3L	18714730	intergenic	not near genes	chr3L	18718764	intergenic	not near genes	chr3L_13_18710001	chr3L_18710001	CanS-SH
1788	chr3L	18772353	18772382	chr3L	18781109	18781138	roo	7	8756	12.5	8.5	10.5	0.6	8785	chr3L	18772353	intron	ftz-f1 -	chr3L	18776746	intron	ftz-f1 -	chr3L	18781138	intron	ftz-f1 -	chr3L_7_18775001	chr3L_18775001	CanS-SH
1793	chr3L	18833719	18833756	chr3L	18834958	18834995	1360	20	1239	19.0	7.0	13.0	1.4	1276	chr3L	18833719	intron	Indy -	chr3L	18834357	intron	Indy -	chr3L	18834995	intron	Indy -	chr3L_20_18830001	chr3L_18830001	CanS-SH
1802	chr3L	19008786	19008819	chr3L	19009199	19009232	jockey	11	413	11.0	12.0	11.5	0.9	446	chr3L	19008786	intron	nkd -	chr3L	19009009	intron	nkd -	chr3L	19009232	intron	nkd -	chr3L_11_19005001	chr3L_19005001	CanS-SH
1805	chr3L	19115578	19115612	chr3L	19115833	19115867	BS	14	255	15.0	6.5	10.8	1.2	289	chr3L	19115578	intron	CG14082 -	chr3L	19115722	intron	CG14082 -	chr3L	19115867	intron	CG14082 -	chr3L_14_19115001	chr3L_19115001	CanS-SH
1806	chr3L	19116980	19117015	chr3L	19124502	19124537	mdg1	14	7522	18.5	9.0	13.8	0.9	7557	chr3L	19116980	intron	CG14082 -	chr3L	19120758	intron	CG14082 -	chr3L	19124537	intron	CG14082 -	chr3L_14_19120001	chr3L_19120001	CanS-SH
1809	chr3L	19207996	19208037	chr3L	19209445	19209486	Doc	18	1449	5.0	6.5	5.8	2.6	1490	chr3L	19207996	intron	fz2 -	chr3L	19208741	intron	fz2 -	chr3L	19209486	intron	fz2 -	chr3L_18_19205001	chr3L_19205001	CanS-SH
1815	chr3L	19398863	19398924	chr3L	19403655	19403716	F-element	18	4792	5.5	4.5	5.0	3.0	4853	chr3L	19398863	intron	CG32206 -	chr3L	19401290	intron	CG32206 -	chr3L	19403716	intron	CG32206 -	chr3L_18_19400001	chr3L_19400001	CanS-SH
1820	chr3L	19463888	19463890	chr3L	19467764	19467766	INE-1	5	3876	50.5	38.5	44.5	0.1	3878	chr3L	19463888	intergenic	CG14095 -	chr3L	19465827	intergenic	not near genes	chr3L	19467766	exon	CG32214 +	chr3L_5_19465001	chr3L_19465001	CanS-SH
1828	chr3L	19820223	19820316	chr3L	19827847	19827940	412	17	7624	4.5	3.5	4.0	3.4	7717	chr3L	19820223	intron	Deaf1 +	chr3L	19824082	intron	Deaf1 +	chr3L	19827940	intron	Deaf1 +	chr3L_17_19820001	chr3L_19820001	CanS-SH
1829	chr3L	19848454	19848488	chr3L	19857720	19857754	roo	18	9266	11.0	15.0	13.0	1.3	9300	chr3L	19848454	intron	Papss +	chr3L	19853104	intron	Papss +	chr3L	19857754	intron	Papss +	chr3L_18_19850001	chr3L_19850001	CanS-SH
1830	chr3L	19861760	19861798	chr3L	19863623	19863661	S-element	17	1863	21.5	8.0	14.8	1.1	1901	chr3L	19861760	5` UTR	CR45433 +	chr3L	19862710	intergenic	not near genes	chr3L	19863661	intergenic	not near genes	chr3L_17_19860001	chr3L_19860001	CanS-SH
1835	chr3L	20113594	20113632	chr3L	20122926	20122964	roo	11	9332	16.5	8.0	12.2	0.8	9370	chr3L	20113594	intergenic	not near genes	chr3L	20118279	intergenic	not near genes	chr3L	20122964	intergenic	not near genes	chr3L_11_20115001	chr3L_20115001	CanS-SH
1838	chr3L	20212545	20212576	chr3L	20218197	20218227	mdg3	13	5652	23.0	11.0	17.0	0.7	5682	chr3L	20212545	intergenic	CG7017 -	chr3L	20215386	intergenic	not near genes	chr3L	20218227	intergenic	CG6933 -	chr3L_13_20215001	chr3L_20215001	CanS-SH
1839	chr3L	20257268	20257308	chr3L	20258463	20258503	pogo	13	1195	12.5	9.5	11.0	1.1	1235	chr3L	20257268	intron	rdgC +	chr3L	20257886	intron	rdgC +	chr3L	20258503	intron	rdgC +	chr3L_13_20255001	chr3L_20255001	CanS-SH
1843	chr3L	20476697	20476729	chr3L	20484371	20484403	springer	8	7674	17.5	12.5	15.0	0.5	7706	chr3L	20476697	3` UTR	isoQC +	chr3L	20480550	intergenic	not near genes	chr3L	20484403	3` UTR	ZnT77C -	chr3L_8_20480001	chr3L_20480001	CanS-SH
1844	chr3L	20487603	20487633	chr3L	20488129	20488159	INE-1	8	526	21.0	7.0	14.0	0.5	556	chr3L	20487603	intron	ZnT77C -	chr3L	20487881	intron	ZnT77C -	chr3L	20488159	exon	ZnT77C -	chr3L_8_20485001	chr3L_20485001	CanS-SH
1847	chr3L	20590008	20590041	chr3L	20590622	20590655	412	11	614	10.0	7.5	8.8	1.1	647	chr3L	20590008	intergenic	not near genes	chr3L	20590332	intergenic	not near genes	chr3L	20590655	intergenic	not near genes	chr3L_11_20590001	chr3L_20590001	CanS-SH
1852	chr3L	21014853	21014888	chr3L	21023409	21023444	Tirant	6	8556	12.5	10.0	11.2	0.5	8591	chr3L	21014853	intron	skd -	chr3L	21019148	intron	skd -	chr3L	21023444	intron	skd -	chr3L_6_21015001	chr3L_21015001	CanS-SH
1854	chr3L	21151801	21151838	chr3L	21156960	21156997	flea	17	5159	12.5	5.5	9.0	1.7	5196	chr3L	21151801	intron	Ac78C -	chr3L	21154399	intron	Ac78C -	chr3L	21156997	intron	Ac78C -	chr3L_17_21150001	chr3L_21150001	CanS-SH
1856	chr3L	21243680	21243692	chr3L	21251318	21251330	412	6	7638	0.0	10.5	5.2	1.0	7650	chr3L	21243680	intron	Eip78C +	chr3L	21247505	intron	Eip78C +	chr3L	21251330	intron	Eip78C +	chr3L_6_21245001	chr3L_21245001	CanS-SH
1857	chr3L	21306084	21306124	chr3L	21315318	21315358	roo	13	9234	13.5	10.5	12.0	1.0	9274	chr3L	21306084	3` UTR	CG7632 +	chr3L	21310721	intron	Pc -	chr3L	21315358	3` UTR	Pc -	chr3L_13_21310001	chr3L_21310001	CanS-SH
1859	chr3L	21372656	21372705	chr3L	21379239	21379287	McClintock	7	6583	14.0	8.0	11.0	0.6	6631	chr3L	21372656	intergenic	not near genes	chr3L	21375972	intergenic	not near genes	chr3L	21379287	intergenic	not near genes	chr3L_7_21375001	chr3L_21375001	CanS-SH
1860	chr3L	21501125	21501144	chr3L	21501294	21501313	1360	8	169	12.0	13.0	12.5	0.6	188	chr3L	21501125	intron	Glg1 -	chr3L	21501219	intron	Glg1 -	chr3L	21501313	intron	Glg1 -	chr3L_8_21500001	chr3L_21500001	CanS-SH
1864	chr3L	21749257	21749291	chr3L	21754492	21754526	Doc	10	5235	14.0	10.5	12.2	0.8	5269	chr3L	21749257	intron	Syn1 -	chr3L	21751892	intron	Syn1 -	chr3L	21754526	intron	Syn1 -	chr3L_10_21750001	chr3L_21750001	CanS-SH
1878	chr3L	22099626	22099643	chr3L	22105887	22105904	3S18	7	6261	18.0	14.0	16.0	0.4	6278	chr3L	22099626	intergenic	not near genes	chr3L	22102765	intergenic	not near genes	chr3L	22105904	intergenic	not near genes	chr3L_7_22100001	chr3L_22100001	CanS-SH
1889	chr3L	22555708	22555742	chr3L	22563252	22563287	blood	10	7545	14.5	3.5	9.0	1.0	7579	chr3L	22555708	intergenic	not near genes	chr3L	22559498	intergenic	not near genes	chr3L	22563287	intergenic	not near genes	chr3L_10_22555001	chr3L_22555001	CanS-SH
1891	chr3L	22577562	22577594	chr3L	22582425	22582457	Doc	13	4863	13.5	7.5	10.5	1.1	4895	chr3L	22577562	intergenic	not near genes	chr3L	22580010	intergenic	not near genes	chr3L	22582457	3` UTR	CG14459 -	chr3L_13_22580001	chr3L_22580001	CanS-SH
1892	chr3L	22617120	22617210	chr3L	22624647	22624737	blood	11	7527	3.5	7.5	5.5	1.7	7617	chr3L	22617120	intron	CG14459 -	chr3L	22620928	intron	CG14459 -	chr3L	22624737	intron	CG14459 -	chr3L_11_22620001	chr3L_22620001	CanS-SH
1898	chr3L	22761326	22761361	chr3L	22766835	22766870	Ivk	15	5509	19.5	3.5	11.5	1.2	5544	chr3L	22761326	intron	SPoCk +	chr3L	22764098	intron	SPoCk +	chr3L	22766870	intron	SPoCk +	chr3L_15_22760001	chr3L_22760001	CanS-SH
1901	chr3L	22865918	22865960	chr3L	22867126	22867169	Doc	8	1208	17.0	10.5	13.8	0.5	1251	chr3L	22865918	exon	CG33170 +	chr3L	22866544	intron	CG33170 +	chr3L	22867169	intron	CG33170 +	chr3L_8_22865001	chr3L_22865001	CanS-SH
1906	chr3L	22989802	22989842	chr3L	22996851	22996891	297	12	7049	15.5	11.5	13.5	0.8	7089	chr3L	22989802	intergenic	not near genes	chr3L	22993346	intergenic	not near genes	chr3L	22996891	intergenic	not near genes	chr3L_12_22990001	chr3L_22990001	CanS-SH
1908	chr3L	23165875	23165887	chr3L	23173394	23173406	Quasimodo	5	7519	11.5	10.5	11.0	0.4	7531	chr3L	23165875	intergenic	not near genes	chr3L	23169640	intergenic	not near genes	chr3L	23173406	intergenic	not near genes	chr3L_5_23165001	chr3L_23165001	CanS-SH
1911	chr3L	23445402	23445419	chr3L	23445601	23445618	Idefix	7	199	12.5	7.0	9.8	0.6	216	chr3L	23445402	intergenic	not near genes	chr3L	23445510	intergenic	not near genes	chr3L	23445618	intergenic	not near genes	chr3L_7_23445001	chr3L_23445001	CanS-SH
1912	chr3L	23570343	23570378	chr3L	23571032	23571067	mariner2	13	689	12.5	5.5	9.0	1.3	724	chr3L	23570343	intron	AGO3 +	chr3L	23570705	intron	AGO3 +	chr3L	23571067	intron	AGO3 +	chr3L_13_23570001	chr3L_23570001	CanS-SH
1913	chr3L	23665460	23665504	chr3L	23665625	23665669	gypsy8	19	165	36.0	33.5	34.8	0.5	209	chr3L	23665460	intron	AGO3 +	chr3L	23665564	intron	AGO3 +	chr3L	23665669	intron	AGO3 +	chr3L_19_23665001	chr3L_23665001	CanS-SH
1916	chr3L	23848778	23848808	chr3L	23849677	23849707	R1A1-element	7	899	3.5	7.5	5.5	1.1	929	chr3L	23848778	intron	CG40470 -	chr3L	23849242	intron	CG40470 -	chr3L	23849707	intron	CG40470 -	chr3L_7_23845001	chr3L_23845001	CanS-SH
1920	chr3L	24012344	24012376	chr3L	24020760	24020792	roo	10	8416	13.5	9.0	11.2	0.8	8448	chr3L	24012344	intergenic	not near genes	chr3L	24016568	intergenic	not near genes	chr3L	24020792	intergenic	not near genes	chr3L_10_24015001	chr3L_24015001	CanS-SH
1921	chr3L	24021225	24021247	chr3L	24022457	24022479	1360	6	1232	18.0	6.5	12.2	0.5	1254	chr3L	24021225	intergenic	not near genes	chr3L	24021852	intergenic	not near genes	chr3L	24022479	intergenic	not near genes	chr3L_6_24020001	chr3L_24020001	CanS-SH
1923	chr3L	24168725	24168758	chr3L	24176128	24176161	ZAM	6	7403	5.5	9.5	7.5	0.7	7436	chr3L	24168725	intron	Snap25 +	chr3L	24172443	intron	Snap25 +	chr3L	24176161	intron	Snap25 +	chr3L_6_24170001	chr3L_24170001	CanS-SH
1924	chr3L	24204220	24204223	chr3L	24226233	24226236	invader2	4	22013	28.5	15.5	22.0	0.2	22016	chr3L	24204220	intron	Snap25 +	chr3L	24215228	intron	Snap25 +	chr3L	24226236	intron	Snap25 +	chr3L_4_24215001	chr3L_24215001	CanS-SH
1928	chr3L	24791837	24791858	chr3L	24796691	24796712	Doc	7	4854	12.0	6.0	9.0	0.7	4875	chr3L	24791837	intergenic	not near genes	chr3L	24794274	intergenic	not near genes	chr3L	24796712	intergenic	not near genes	chr3L_7_24790001	chr3L_24790001	CanS-SH
1934	chr3L	25628439	25628460	chr3L	25633285	25633306	F-element	10	4846	21.5	6.5	14.0	0.7	4867	chr3L	25628439	intron	CG41343 -	chr3L	25630872	intron	CG41343 -	chr3L	25633306	intron	CG41343 -	chr3L_10_25630001	chr3L_25630001	CanS-SH
1938	chr3L	26704466	26704501	chr3L	26709846	26709881	Transpac	5	5380	8.0	6.5	7.2	0.6	5415	chr3L	26704466	intergenic	not near genes	chr3L	26707174	intergenic	not near genes	chr3L	26709881	intergenic	not near genes	chr3L_5_26705001	chr3L_26705001	CanS-SH
1939	chr3L	27356040	27356070	chr3L	27357314	27357344	1360	5	1274	12.5	0.0	6.2	0.7	1304	chr3L	27356040	intron	Dbp80 +	chr3L	27356692	intron	Dbp80 +	chr3L	27357344	intron	Dbp80 +	chr3L_5_27355001	chr3L_27355001	CanS-SH
1943	chr3L	27980626	27980664	chr3L	27985499	27985537	Doc	20	4873	13.0	4.5	8.8	2.0	4911	chr3L	27980626	intron	CG17514 -	chr3L	27983082	intron	CG17514 -	chr3L	27985537	intron	CG17514 -	chr3L_20_27980001	chr3L_27980001	CanS-SH
1946	chr3R	1867040	1867066	chr3R	1954897	1954923	Doc3-element	5	87857	14.5	7.5	11.0	0.4	87883	chr3R	1867040	intron	CG42623 +	chr3R	1910982	intron	CG42623 +	chr3R	1954923	intergenic	not near genes	chr3R_5_1910001	chr3R_1910001	CanS-SH
1955	chr3R	4078225	4078228	chr3R	4079875	4079878	INE-1	4	1650	29.0	40.5	34.8	0.1	1653	chr3R	4078225	5` UTR	CG42402 +	chr3R	4079052	intron	CG42402 +	chr3R	4079878	intron	CG42402 +	chr3R_4_4075001	chr3R_4075001	CanS-SH
1956	chr3R	4104979	4105014	chr3R	4110258	4110293	copia	8	5279	10.0	8.0	9.0	0.8	5314	chr3R	4104979	intergenic	not near genes	chr3R	4107636	intergenic	not near genes	chr3R	4110293	intergenic	not near genes	chr3R_8_4105001	chr3R_4105001	CanS-SH
1957	chr3R	4206008	4206049	chr3R	4211658	4211699	mdg3	12	5650	8.0	6.0	7.0	1.5	5691	chr3R	4206008	intron	CG14636 -	chr3R	4208854	intron	CG14636 -	chr3R	4211699	intron	CG14636 -	chr3R_12_4205001	chr3R_4205001	CanS-SH
1958	chr3R	4366700	4366735	chr3R	4375158	4375193	roo	14	8458	16.0	8.5	12.2	1.1	8493	chr3R	4366700	3` UTR	CG1090 +	chr3R	4370946	intergenic	not near genes	chr3R	4375193	5` UTR	CR44922 +	chr3R_14_4370001	chr3R_4370001	CanS-SH
1960	chr3R	4408351	4408388	chr3R	4412730	4412767	Juan	14	4379	17.0	16.0	16.5	0.8	4416	chr3R	4408351	intron	CG32944 -	chr3R	4410559	intron	CG32944 -	chr3R	4412767	intron	CG32944 -	chr3R_14_4410001	chr3R_4410001	CanS-SH
1961	chr3R	4413868	4413895	chr3R	4414434	4414461	INE-1	12	566	16.0	15.0	15.5	0.7	593	chr3R	4413868	intron	CG32944 -	chr3R	4414164	intron	CG32944 -	chr3R	4414461	intron	CG32944 -	chr3R_12_4410001	chr3R_4410001	CanS-SH
1963	chr3R	4538811	4538829	chr3R	4540146	4540163	1360	7	1335	13.5	9.5	11.5	0.6	1352	chr3R	4538811	intron	CG34357 -	chr3R	4539487	intron	CG34357 -	chr3R	4540163	intron	CG34357 -	chr3R_7_4535001	chr3R_4535001	CanS-SH
1964	chr3R	4609490	4609526	chr3R	4610729	4610765	1360	14	1239	12.0	12.0	12.0	1.1	1275	chr3R	4609490	intergenic	not near genes	chr3R	4610128	intergenic	not near genes	chr3R	4610765	intergenic	not near genes	chr3R_14_4610001	chr3R_4610001	CanS-SH
1968	chr3R	4753185	4753213	chr3R	4757563	4757591	F-element	7	4378	20.0	12.0	16.0	0.4	4406	chr3R	4753185	intron,exon	atms +,CG44098 -	chr3R	4755388	intron,intron	atms +,CG44098 -	chr3R	4757591	intron,exon	atms +,CG44098 -	chr3R_7_4755001	chr3R_4755001	CanS-SH
1970	chr3R	4887412	4887453	chr3R	4894864	4894906	rover	11	7452	9.0	5.5	7.2	1.3	7494	chr3R	4887412	intergenic	not near genes	chr3R	4891159	intergenic	not near genes	chr3R	4894906	intergenic	not near genes	chr3R_11_4890001	chr3R_4890001	CanS-SH
1974	chr3R	5045788	5045828	chr3R	5052965	5053005	HMS-Beagle	13	7177	11.5	5.5	8.5	1.4	7217	chr3R	5045788	3` UTR	CR43635 -	chr3R	5049396	intergenic	not near genes	chr3R	5053005	intergenic	CR45588 -	chr3R_13_5045001	chr3R_5045001	CanS-SH
1975	chr3R	5067921	5067961	chr3R	5073513	5073552	mdg3	15	5592	17.5	9.5	13.5	1.0	5631	chr3R	5067921	intergenic	not near genes	chr3R	5070736	intergenic	not near genes	chr3R	5073552	intergenic	not near genes	chr3R_15_5070001	chr3R_5070001	CanS-SH
1980	chr3R	5338341	5338368	chr3R	5343593	5343620	Rt1c	8	5252	12.5	8.0	10.2	0.7	5279	chr3R	5338341	intron	mtd -	chr3R	5340980	intron	mtd -	chr3R	5343620	intron	mtd -	chr3R_8_5340001	chr3R_5340001	CanS-SH
1981	chr3R	5445898	5445936	chr3R	5452433	5452471	Burdock	18	6535	14.0	7.0	10.5	1.6	6573	chr3R	5445898	intron	CG14669 +	chr3R	5449184	intron	CG14669 +	chr3R	5452471	intron	CG14669 +	chr3R_18_5445001	chr3R_5445001	CanS-SH
1986	chr3R	5745952	5745994	chr3R	5746268	5746310	pogo	8	316	16.0	6.5	11.2	0.7	358	chr3R	5745952	3` UTR	Madm +	chr3R	5746131	3` UTR	Madm +	chr3R	5746310	3` UTR	Madm +	chr3R_8_5745001	chr3R_5745001	CanS-SH
1987	chr3R	5746953	5746993	chr3R	5753219	5753259	diver	13	6266	15.0	8.5	11.8	1.0	6306	chr3R	5746953	intergenic	Madm +	chr3R	5750106	intergenic	not near genes	chr3R	5753259	intergenic	CG2091 -	chr3R_13_5750001	chr3R_5750001	CanS-SH
1989	chr3R	5809048	5809091	chr3R	5809364	5809407	pogo	15	316	11.0	11.0	11.0	1.2	359	chr3R	5809048	3` UTR	CG11000 +	chr3R	5809228	3` UTR	CG11000 +	chr3R	5809407	3` UTR	CG11000 +	chr3R_15_5805001	chr3R_5805001	CanS-SH
1990	chr3R	5822305	5822397	chr3R	5823552	5823644	1360	16	1247	8.0	6.0	7.0	2.0	1339	chr3R	5822305	3` UTR	CG2023 -	chr3R	5822974	3` UTR	CG2023 -	chr3R	5823644	3` UTR	CG2023 -	chr3R_16_5820001	chr3R_5820001	CanS-SH
1994	chr3R	5927502	5927538	chr3R	5927817	5927852	pogo	16	315	14.5	12.5	13.5	1.1	350	chr3R	5927502	intron	CG34113 -	chr3R	5927677	intron	CG34113 -	chr3R	5927852	intron	CG34113 -	chr3R_16_5925001	chr3R_5925001	CanS-SH
1996	chr3R	6015903	6015989	chr3R	6024459	6024545	Tirant	7	8556	5.0	8.5	6.8	0.9	8642	chr3R	6015903	intergenic	not near genes	chr3R	6020224	intergenic	not near genes	chr3R	6024545	intergenic	not near genes	chr3R_7_6020001	chr3R_6020001	CanS-SH
1998	chr3R	6121109	6121122	chr3R	6121369	6121382	BS	5	260	10.5	7.5	9.0	0.5	273	chr3R	6121109	intergenic	not near genes	chr3R	6121246	intergenic	not near genes	chr3R	6121382	intergenic	not near genes	chr3R_5_6120001	chr3R_6120001	CanS-SH
1999	chr3R	6158449	6158479	chr3R	6167107	6167137	Tirant	6	8658	15.5	4.5	10.0	0.5	8688	chr3R	6158449	intergenic	not near genes	chr3R	6162793	intergenic	not near genes	chr3R	6167137	intergenic	CG1077 +	chr3R_6_6160001	chr3R_6160001	CanS-SH
2001	chr3R	6175118	6175147	chr3R	6182465	6182494	HMS-Beagle2	7	7347	11.0	7.5	9.2	0.7	7376	chr3R	6175118	intergenic	Osi1 +	chr3R	6178806	intron	CR45194 +	chr3R	6182494	intergenic	CR45194 +	chr3R_7_6175001	chr3R_6175001	CanS-SH
2004	chr3R	6206229	6206257	chr3R	6206521	6206549	BS	8	292	15.5	11.0	13.2	0.6	320	chr3R	6206229	exon	Osi24 +	chr3R	6206389	intron	Osi24 +	chr3R	6206549	intron	Osi24 +	chr3R_8_6205001	chr3R_6205001	CanS-SH
2007	chr3R	6509961	6510001	chr3R	6515117	6515157	jockey	16	5156	16.0	10.0	13.0	1.1	5196	chr3R	6509961	intergenic	not near genes	chr3R	6512559	intergenic	not near genes	chr3R	6515157	intergenic	not near genes	chr3R_16_6510001	chr3R_6510001	CanS-SH
2010	chr3R	6737438	6737476	chr3R	6739300	6739338	Doc	8	1862	10.5	9.0	9.8	0.7	1900	chr3R	6737438	intron	pb -	chr3R	6738388	intron	pb -	chr3R	6739338	intron	pb -	chr3R_8_6735001	chr3R_6735001	CanS-SH
2028	chr3R	7558537	7558554	chr3R	7563276	7563293	Doc	5	4739	7.0	10.5	8.8	0.5	4756	chr3R	7558537	intergenic	not near genes	chr3R	7560915	intergenic	not near genes	chr3R	7563293	intergenic	not near genes	chr3R_5_7560001	chr3R_7560001	CanS-SH
2033	chr3R	7694520	7694552	chr3R	7713656	7713688	invader3	14	19136	10.0	7.0	8.5	1.5	19168	chr3R	7694520	3` UTR	Nlg1 +	chr3R	7704104	intergenic	not near genes	chr3R	7713688	intergenic	not near genes	chr3R_14_7700001	chr3R_7700001	CanS-SH
2034	chr3R	7729404	7729433	chr3R	7737417	7737446	Stalker2	13	8013	18.5	10.0	14.2	0.9	8042	chr3R	7729404	intergenic	not near genes	chr3R	7733425	intergenic	not near genes	chr3R	7737446	intergenic	not near genes	chr3R_13_7730001	chr3R_7730001	CanS-SH
2038	chr3R	7973260	7973292	chr3R	7974397	7974429	1360	13	1137	16.5	13.0	14.8	0.8	1169	chr3R	7973260	intergenic	not near genes	chr3R	7973844	intergenic	not near genes	chr3R	7974429	3` UTR	CD98hc -	chr3R_13_7970001	chr3R_7970001	CanS-SH
2043	chr3R	8090490	8090512	chr3R	8094042	8094064	297	13	3552	7.0	12.0	9.5	1.2	3574	chr3R	8090490	intergenic	CR44330 +	chr3R	8092277	intergenic	not near genes	chr3R	8094064	intergenic	CG7900 +	chr3R_13_8090001	chr3R_8090001	CanS-SH
2044	chr3R	8094349	8094381	chr3R	8099729	8099761	Transpac	13	5380	17.0	11.0	14.0	0.9	5412	chr3R	8094349	intron	CG7900 +	chr3R	8097055	intron	CG7900 +	chr3R	8099761	intron	CG7900 +	chr3R_13_8095001	chr3R_8095001	CanS-SH
2045	chr3R	8101697	8101737	chr3R	8104856	8104896	G2	13	3159	10.0	11.5	10.8	1.1	3199	chr3R	8101697	exon	CG7900 +	chr3R	8103296	intron	CG7900 +	chr3R	8104896	3` UTR	CG7900 +	chr3R_13_8100001	chr3R_8100001	CanS-SH
2048	chr3R	8207502	8207577	chr3R	8208423	8208497	F-element	5	921	9.5	7.5	8.5	0.5	995	chr3R	8207502	intergenic	not near genes	chr3R	8208000	intergenic	not near genes	chr3R	8208497	intergenic	not near genes	chr3R_5_8205001	chr3R_8205001	CanS-SH
2052	chr3R	8402959	8402983	chr3R	8412200	8412224	roo	12	9241	12.5	8.0	10.2	1.1	9265	chr3R	8402959	intron	CG45263 -	chr3R	8407592	intron	CG45263 -	chr3R	8412224	intron	CG45263 -	chr3R_12_8405001	chr3R_8405001	CanS-SH
2055	chr3R	8570416	8570452	chr3R	8575125	8575163	HMS-Beagle	6	4710	10.5	6.5	8.5	0.6	4747	chr3R	8570416	intergenic	not near genes	chr3R	8572790	intergenic	not near genes	chr3R	8575163	intergenic	not near genes	chr3R_6_8570001	chr3R_8570001	CanS-SH
2056	chr3R	8601719	8601745	chr3R	8610947	8610973	roo	15	9228	17.0	14.5	15.8	0.9	9254	chr3R	8601719	intron	5-HT2B +	chr3R	8606346	intron	5-HT2B +	chr3R	8610973	intron	5-HT2B +	chr3R_15_8605001	chr3R_8605001	CanS-SH
2058	chr3R	8707252	8707332	chr3R	8709790	8709848	jockey	20	2532	0.0	7.0	3.5	4.4	2596	chr3R	8707252	intergenic	not near genes	chr3R	8708550	intergenic	not near genes	chr3R	8709848	intergenic	not near genes	chr3R_20_8705001	chr3R_8705001	CanS-SH
2060	chr3R	8868748	8868764	chr3R	8872665	8872681	297	5	3917	17.0	10.5	13.8	0.3	3933	chr3R	8868748	intron	pyd -	chr3R	8870714	intron	pyd -	chr3R	8872681	intron	pyd -	chr3R_5_8870001	chr3R_8870001	CanS-SH
2061	chr3R	8898159	8898198	chr3R	8913814	8913853	297	10	15655	16.0	7.5	11.8	0.8	15694	chr3R	8898159	intron	pyd -	chr3R	8906006	intron	pyd -	chr3R	8913853	intron	pyd -	chr3R_10_8905001	chr3R_8905001	CanS-SH
2070	chr3R	10255322	10255355	chr3R	10260837	10260870	I-element	10	5515	19.5	10.0	14.8	0.6	5548	chr3R	10255322	intergenic	Sirt6 -,CG3999 +	chr3R	10258096	intron	Sirt6 -	chr3R	10260870	exon	Sirt6 -	chr3R_10_10255001	chr3R_10255001	CanS-SH
2074	chr3R	11065533	11065612	chr3R	11071260	11071339	297	11	5727	6.5	7.5	7.0	1.4	5806	chr3R	11065533	intergenic	not near genes	chr3R	11068436	intergenic	not near genes	chr3R	11071339	intergenic	not near genes	chr3R_11_11065001	chr3R_11065001	CanS-SH
2084	chr3R	11379173	11379200	chr3R	11388403	11388430	roo	7	9230	0.5	8.0	4.2	1.3	9257	chr3R	11379173	intron	pros +	chr3R	11383802	intron	pros +	chr3R	11388430	intron	pros +	chr3R_7_11380001	chr3R_11380001	CanS-SH
2094	chr3R	11840998	11841036	chr3R	11846264	11846302	BS	14	5266	12.0	5.5	8.8	1.4	5304	chr3R	11840998	intron	CG6959 -	chr3R	11843650	intron	CG6959 -	chr3R	11846302	intron	CG6959 -	chr3R_14_11840001	chr3R_11840001	CanS-SH
2100	chr3R	11957783	11957818	chr3R	11958141	11958176	S-element	14	358	16.0	5.5	10.8	1.2	393	chr3R	11957783	intergenic	not near genes	chr3R	11957980	intergenic	not near genes	chr3R	11958176	intergenic	not near genes	chr3R_14_11955001	chr3R_11955001	CanS-SH
2101	chr3R	12022825	12022854	chr3R	12025077	12025106	pogo	9	2252	10.0	6.5	8.2	1.0	2281	chr3R	12022825	intergenic	not near genes	chr3R	12023966	intergenic	not near genes	chr3R	12025106	intergenic	not near genes	chr3R_9_12020001	chr3R_12020001	CanS-SH
2120	chr3R	12780206	12780291	chr3R	12780394	12780480	BS	18	188	7.5	7.5	7.5	2.1	274	chr3R	12780206	intron	beat-Vc -	chr3R	12780343	intron	beat-Vc -	chr3R	12780480	intron	beat-Vc -	chr3R_18_12780001	chr3R_12780001	CanS-SH
2125	chr3R	12864482	12864559	chr3R	12865059	12865136	roo	5	577	6.0	6.5	6.2	0.7	654	chr3R	12864482	intergenic	not near genes	chr3R	12864809	intergenic	not near genes	chr3R	12865136	intergenic	not near genes	chr3R_5_12860001	chr3R_12860001	CanS-SH
2129	chr3R	12920096	12920124	chr3R	12925374	12925402	copia	8	5278	13.0	10.5	11.8	0.6	5306	chr3R	12920096	intron	beat-Vb +	chr3R	12922749	intron	beat-Vb +	chr3R	12925402	intron	beat-Vb +	chr3R_8_12920001	chr3R_12920001	CanS-SH
2133	chr3R	13135761	13135850	chr3R	13138001	13138090	pogo	18	2240	5.5	7.5	6.5	2.4	2329	chr3R	13135761	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136926	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138090	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_18_13135001	chr3R_13135001	CanS-SH
2134	chr3R	13142967	13143010	chr3R	13148618	13148661	mdg3	16	5651	12.0	6.5	9.2	1.6	5694	chr3R	13142967	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145814	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148661	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_16_13145001	chr3R_13145001	CanS-SH
2139	chr3R	13314042	13314066	chr3R	13318906	13318930	Doc	14	4864	11.5	7.5	9.5	1.3	4888	chr3R	13314042	intergenic	not near genes	chr3R	13316486	intergenic	not near genes	chr3R	13318930	intergenic	CG45080 -	chr3R_14_13315001	chr3R_13315001	CanS-SH
2161	chr3R	14194367	14194406	chr3R	14203591	14203630	roo	10	9224	9.5	6.0	7.8	1.1	9263	chr3R	14194367	intron	Dop1R1 -	chr3R	14198998	intron	Dop1R1 -	chr3R	14203630	intron	Dop1R1 -	chr3R_10_14195001	chr3R_14195001	CanS-SH
2178	chr3R	15041373	15041399	chr3R	15045216	15045242	Doc	7	3843	12.0	14.5	13.2	0.5	3869	chr3R	15041373	intergenic	not near genes	chr3R	15043308	intergenic	not near genes	chr3R	15045242	intergenic	not near genes	chr3R_7_15040001	chr3R_15040001	CanS-SH
2180	chr3R	15079746	15079786	chr3R	15080062	15080102	pogo	16	316	18.5	9.0	13.8	1.1	356	chr3R	15079746	3` UTR	CG6966 -	chr3R	15079924	3` UTR	CG6966 -	chr3R	15080102	3` UTR	CG6966 -	chr3R_16_15075001	chr3R_15075001	CanS-SH
2182	chr3R	15102430	15102466	chr3R	15109762	15109798	412	17	7332	13.5	8.5	11.0	1.4	7368	chr3R	15102430	intron	CG42788 -	chr3R	15106114	intron	CG42788 -	chr3R	15109798	intron	CG42788 -	chr3R_17_15105001	chr3R_15105001	CanS-SH
2183	chr3R	15132012	15132035	chr3R	15135147	15135170	Juan	7	3135	14.0	13.5	13.8	0.5	3158	chr3R	15132012	intergenic	CG42788 -	chr3R	15133591	intergenic	not near genes	chr3R	15135170	3` UTR	CG6912 -	chr3R_7_15130001	chr3R_15130001	CanS-SH
2184	chr3R	15162482	15162526	chr3R	15167325	15167369	F-element	5	4843	16.0	8.0	12.0	0.4	4887	chr3R	15162482	intron	Gyc88E +	chr3R	15164926	intron	Gyc88E +	chr3R	15167369	intron	Gyc88E +	chr3R_5_15160001	chr3R_15160001	CanS-SH
2198	chr3R	16756257	16756299	chr3R	16762523	16762565	diver	15	6266	15.0	4.5	9.8	1.4	6308	chr3R	16756257	intron	bxd -	chr3R	16759411	intron	bxd -	chr3R	16762565	intron	bxd -	chr3R_15_16755001	chr3R_16755001	CanS-SH
2217	chr3R	17294609	17294642	chr3R	17295112	17295145	BS	10	503	15.0	10.0	12.5	0.7	536	chr3R	17294609	intergenic	not near genes	chr3R	17294877	intergenic	not near genes	chr3R	17295145	intergenic	not near genes	chr3R_10_17290001	chr3R_17290001	CanS-SH
2222	chr3R	17591230	17591264	chr3R	17591741	17591774	F-element	15	511	15.5	10.5	13.0	1.1	544	chr3R	17591230	intergenic	not near genes	chr3R	17591502	intergenic	not near genes	chr3R	17591774	intergenic	not near genes	chr3R_15_17590001	chr3R_17590001	CanS-SH
2228	chr3R	17925799	17925824	chr3R	17927341	17927366	hobo	4	1542	7.0	7.0	7.0	0.5	1567	chr3R	17925799	intron	cpo +	chr3R	17926582	intron	cpo +	chr3R	17927366	intron	cpo +	chr3R_4_17925001	chr3R_17925001	CanS-SH
2229	chr3R	18032705	18032804	chr3R	18040453	18040552	opus	16	7748	3.0	6.0	4.5	2.9	7847	chr3R	18032705	intergenic	not near genes	chr3R	18036628	intergenic	not near genes	chr3R	18040552	intergenic	not near genes	chr3R_16_18035001	chr3R_18035001	CanS-SH
2231	chr3R	18061528	18061557	chr3R	18063171	18063200	F-element	5	1643	14.0	14.5	14.2	0.3	1672	chr3R	18061528	intergenic	not near genes	chr3R	18062364	intergenic	not near genes	chr3R	18063200	intergenic	not near genes	chr3R_5_18060001	chr3R_18060001	CanS-SH
2246	chr3R	18606441	18606479	chr3R	18610748	18610786	F-element	16	4307	10.5	10.5	10.5	1.4	4345	chr3R	18606441	intron,intron	qin +,CG14304 -	chr3R	18608614	intron,intron	qin +,CG14304 -	chr3R	18610786	intron,intron	qin +,CG14304 -	chr3R_16_18605001	chr3R_18605001	CanS-SH
2276	chr3R	19744182	19744204	chr3R	19749503	19749524	Rt1a	7	5321	9.5	13.0	11.2	0.6	5342	chr3R	19744182	intron,intron	GluClalpha +,CR43488 -	chr3R	19746853	intron	GluClalpha +	chr3R	19749524	intron	GluClalpha +	chr3R_7_19745001	chr3R_19745001	CanS-SH
2286	chr3R	20109484	20109512	chr3R	20114765	20114793	copia	10	5281	14.5	14.0	14.2	0.7	5309	chr3R	20109484	intergenic	not near genes	chr3R	20112138	intergenic	not near genes	chr3R	20114793	intergenic	CG10887 +	chr3R_10_20110001	chr3R_20110001	CanS-SH
2288	chr3R	20156636	20156666	chr3R	20165881	20165911	roo	11	9245	14.0	7.0	10.5	1.0	9275	chr3R	20156636	intergenic	not near genes	chr3R	20161274	intergenic	not near genes	chr3R	20165911	intergenic	not near genes	chr3R_11_20160001	chr3R_20160001	CanS-SH
2300	chr3R	20330939	20330968	chr3R	20331500	20331528	roo	10	561	20.0	12.5	16.2	0.6	589	chr3R	20330939	intergenic	Sirt2 +	chr3R	20331234	intergenic	Sirt2 +	chr3R	20331528	intergenic	not near genes	chr3R_10_20330001	chr3R_20330001	CanS-SH
2311	chr3R	20512939	20513037	chr3R	20515717	20515808	opus	10	2777	8.0	0.0	4.0	2.0	2869	chr3R	20512939	intergenic	CG4288 -	chr3R	20514374	intergenic	not near genes	chr3R	20515808	intergenic	not near genes	chr3R_10_20510001	chr3R_20510001	CanS-SH
2314	chr3R	20613111	20613148	chr3R	20613269	20613306	INE-1	14	158	17.5	8.5	13.0	1.0	195	chr3R	20613111	intron	CG15923 -	chr3R	20613208	intron	CG15923 -	chr3R	20613306	intron	CG15923 -	chr3R_14_20610001	chr3R_20610001	CanS-SH
2323	chr3R	20854410	20854439	chr3R	20859280	20859309	Doc	12	4870	13.0	6.5	9.8	1.1	4899	chr3R	20854410	exon	Ir93a -	chr3R	20856860	intron	Ir93a -	chr3R	20859309	exon	Ir93a -	chr3R_12_20855001	chr3R_20855001	CanS-SH
2334	chr3R	21141613	21141701	chr3R	21150169	21150256	Tirant	10	8555	10.0	6.0	8.0	1.1	8643	chr3R	21141613	intron	SNF4Agamma +	chr3R	21145934	intron	SNF4Agamma +	chr3R	21150256	intron	SNF4Agamma +	chr3R_10_21145001	chr3R_21145001	CanS-SH
2349	chr3R	21761065	21761094	chr3R	21768532	21768561	mdg1	12	7467	13.5	8.5	11.0	1.0	7496	chr3R	21761065	exon	CG42335 +	chr3R	21764813	intron	CG42335 +	chr3R	21768561	exon	CG42335 +	chr3R_12_21760001	chr3R_21760001	CanS-SH
2361	chr3R	22234619	22234659	chr3R	22236013	22236053	pogo	21	1394	20.0	8.0	14.0	1.4	1434	chr3R	22234619	intron	SKIP +	chr3R	22235336	intron	SKIP +	chr3R	22236053	intron	SKIP +	chr3R_21_22235001	chr3R_22235001	CanS-SH
2362	chr3R	22239436	22239457	chr3R	22248571	22248592	roo	9	9135	17.5	10.5	14.0	0.6	9156	chr3R	22239436	intron	SKIP +	chr3R	22244014	intron	SKIP +	chr3R	22248592	intron	SKIP +	chr3R_9_22240001	chr3R_22240001	CanS-SH
2366	chr3R	22450482	22450517	chr3R	22453197	22453232	NOF	11	2715	16.5	8.5	12.5	0.8	2750	chr3R	22450482	intron	CG34376 +	chr3R	22451857	intron	CG34376 +	chr3R	22453232	intron	CG34376 +	chr3R_11_22450001	chr3R_22450001	CanS-SH
2381	chr3R	23515503	23515522	chr3R	23516739	23516758	1360	4	1236	7.0	2.5	4.8	0.7	1255	chr3R	23515503	intron	Irk2 -	chr3R	23516130	intron	Irk2 -	chr3R	23516758	intron	Irk2 -	chr3R_4_23515001	chr3R_23515001	CanS-SH
2382	chr3R	23558335	23558418	chr3R	23560191	23560274	Bari1	12	1856	6.5	7.0	6.8	1.5	1939	chr3R	23558335	intron	beat-IV +	chr3R	23559304	intron	beat-IV +	chr3R	23560274	intron	beat-IV +	chr3R_12_23555001	chr3R_23555001	CanS-SH
2386	chr3R	23684629	23684670	chr3R	23685190	23685231	roo	15	561	11.5	2.5	7.0	1.9	602	chr3R	23684629	exon	CG18754 +	chr3R	23684930	intron	CG18754 +	chr3R	23685231	exon	CG18754 +	chr3R_15_23680001	chr3R_23680001	CanS-SH
2389	chr3R	23835344	23835403	chr3R	23844569	23844626	roo	11	9224	14.0	0.0	7.0	1.4	9282	chr3R	23835344	intron	CG34355 +	chr3R	23839985	intron	CG34355 +	chr3R	23844626	intron	CG34355 +	chr3R_11_23835001	chr3R_23835001	CanS-SH
2390	chr3R	23851017	23851034	chr3R	23858759	23858776	opus	12	7742	13.5	14.5	14.0	0.8	7759	chr3R	23851017	3` UTR	CG34355 +	chr3R	23854896	intergenic	not near genes	chr3R	23858776	intergenic	not near genes	chr3R_12_23850001	chr3R_23850001	CanS-SH
2398	chr3R	24072060	24072082	chr3R	24072571	24072593	jockey	9	511	11.0	0.0	5.5	1.4	533	chr3R	24072060	intron	4EHP -	chr3R	24072326	intron	4EHP -	chr3R	24072593	intron	4EHP -	chr3R_9_24070001	chr3R_24070001	CanS-SH
2399	chr3R	24076862	24076893	chr3R	24078404	24078435	hobo	10	1542	15.5	12.0	13.8	0.7	1573	chr3R	24076862	intron	4EHP -	chr3R	24077648	intron	4EHP -	chr3R	24078435	intron	4EHP -	chr3R_10_24075001	chr3R_24075001	CanS-SH
2404	chr3R	24730034	24730046	chr3R	24732487	24732499	Doc	7	2453	16.5	3.5	10.0	0.6	2465	chr3R	24730034	intron	tok +	chr3R	24731266	intron	tok +	chr3R	24732499	intron	tok +	chr3R_7_24730001	chr3R_24730001	CanS-SH
2410	chr3R	24927068	24927102	chr3R	24931934	24931968	Doc	18	4866	17.5	10.5	14.0	1.2	4900	chr3R	24927068	3` UTR	Trf4-2 +	chr3R	24929518	intergenic	not near genes	chr3R	24931968	intergenic	CG11771 +	chr3R_18_24925001	chr3R_24925001	CanS-SH
2427	chr3R	25725768	25725806	chr3R	25735003	25735041	roo	15	9235	19.0	11.0	15.0	0.9	9273	chr3R	25725768	intron	LpR2 -	chr3R	25730404	intron	LpR2 -	chr3R	25735041	intron	LpR2 -	chr3R_15_25730001	chr3R_25730001	CanS-SH
2428	chr3R	25832637	25832667	chr3R	25841894	25841924	roo	11	9257	15.0	11.5	13.2	0.8	9287	chr3R	25832637	exon	alpha4GT2 +	chr3R	25837280	intron	alpha4GT2 +	chr3R	25841924	exon	alpha4GT2 +	chr3R_11_25835001	chr3R_25835001	CanS-SH
2436	chr3R	26376263	26376352	chr3R	26385498	26385601	roo	13	9236	8.0	0.0	4.0	2.6	9338	chr3R	26376263	intergenic	not near genes	chr3R	26380932	intergenic	not near genes	chr3R	26385601	intergenic	not near genes	chr3R_13_26380001	chr3R_26380001	CanS-SH
2437	chr3R	26510446	26510489	chr3R	26519576	26519619	roo	12	9130	11.5	9.0	10.2	1.1	9173	chr3R	26510446	intron	plum -	chr3R	26515032	intron	plum -	chr3R	26519619	intron,5` UTR	plum -,CR45226 +	chr3R_12_26515001	chr3R_26515001	CanS-SH
2440	chr3R	26558263	26558293	chr3R	26565651	26565681	Stalker4	8	7388	14.5	8.0	11.2	0.7	7418	chr3R	26558263	intron	scrib +	chr3R	26561972	intron	scrib +	chr3R	26565681	intron	scrib +	chr3R_8_26560001	chr3R_26560001	CanS-SH
2442	chr3R	26642679	26642709	chr3R	26643148	26643178	jockey	9	469	16.5	3.0	9.8	0.8	499	chr3R	26642679	intergenic	not near genes	chr3R	26642928	intergenic	not near genes	chr3R	26643178	intergenic	not near genes	chr3R_9_26640001	chr3R_26640001	CanS-SH
2445	chr3R	26810494	26810525	chr3R	26811054	26811085	roo	12	560	18.0	9.0	13.5	0.8	591	chr3R	26810494	intron	Tl +	chr3R	26810790	intron	Tl +	chr3R	26811085	intron	Tl +	chr3R_12_26810001	chr3R_26810001	CanS-SH
2447	chr3R	27007336	27007371	chr3R	27016546	27016581	roo	16	9210	14.5	7.0	10.8	1.4	9245	chr3R	27007336	intron	RYa-R +	chr3R	27011958	intron	RYa-R +	chr3R	27016581	intron	RYa-R +	chr3R_16_27010001	chr3R_27010001	CanS-SH
2452	chr3R	27140468	27140492	chr3R	27148153	27148177	412	8	7685	15.0	11.5	13.2	0.6	7709	chr3R	27140468	intron	CG6051 -	chr3R	27144322	intron	CG6051 -	chr3R	27148177	intron	CG6051 -	chr3R_8_27140001	chr3R_27140001	CanS-SH
2457	chr3R	27342735	27342770	chr3R	27351389	27351426	Tirant	13	8656	11.5	6.0	8.8	1.3	8691	chr3R	27342735	intron	CG42534 +	chr3R	27347080	intron	CG42534 +	chr3R	27351426	intron	CG42534 +	chr3R_13_27345001	chr3R_27345001	CanS-SH
2460	chr3R	27521099	27521131	chr3R	27530383	27530415	roo	12	9284	14.0	6.5	10.2	1.1	9316	chr3R	27521099	intron	CG12885 +	chr3R	27525757	intron	CG12885 +	chr3R	27530415	intron	CG12885 +	chr3R_12_27525001	chr3R_27525001	CanS-SH
2467	chr3R	27725509	27725539	chr3R	27731026	27731056	I-element	13	5517	17.0	10.0	13.5	0.9	5547	chr3R	27725509	intergenic	not near genes	chr3R	27728282	intergenic	not near genes	chr3R	27731056	intergenic	not near genes	chr3R_13_27725001	chr3R_27725001	CanS-SH
2472	chr3R	27856697	27856736	chr3R	27858255	27858294	hopper2	6	1558	9.5	4.0	6.8	0.8	1597	chr3R	27856697	intron	CG34353 -	chr3R	27857496	intron	CG34353 -	chr3R	27858294	intron	CG34353 -	chr3R_6_27855001	chr3R_27855001	CanS-SH
2473	chr3R	27862893	27862929	chr3R	27868273	27868309	Transpac	11	5380	13.5	11.5	12.5	0.8	5416	chr3R	27862893	intron	CG34353 -	chr3R	27865601	intron	CG34353 -	chr3R	27868309	intron	CG34353 -	chr3R_11_27865001	chr3R_27865001	CanS-SH
2475	chr3R	27875641	27875675	chr3R	27882771	27882805	297	12	7130	16.0	14.0	15.0	0.8	7164	chr3R	27875641	intron	CG34353 -	chr3R	27879223	intron	CG34353 -	chr3R	27882805	intron	CG34353 -	chr3R_12_27875001	chr3R_27875001	CanS-SH
2480	chr3R	28068421	28068436	chr3R	28073938	28073953	I-element	4	5517	0.0	3.5	1.8	1.4	5532	chr3R	28068421	intron	CG34362 +	chr3R	28071187	intron	CG34362 +	chr3R	28073953	intron	CG34362 +	chr3R_4_28070001	chr3R_28070001	CanS-SH
2482	chr3R	28173598	28173622	chr3R	28181103	28181127	mdg1	7	7505	3.5	4.0	3.8	1.5	7529	chr3R	28173598	intron	CG34354 +	chr3R	28177362	intron	CG34354 +	chr3R	28181127	intron	CG34354 +	chr3R_7_28175001	chr3R_28175001	CanS-SH
2483	chr3R	28253286	28253305	chr3R	28255871	28255890	jockey	8	2585	15.5	10.0	12.8	0.6	2604	chr3R	28253286	intergenic	not near genes	chr3R	28254588	intergenic	not near genes	chr3R	28255890	intergenic	not near genes	chr3R_8_28250001	chr3R_28250001	CanS-SH
2485	chr3R	28302029	28302112	chr3R	28302546	28302629	jockey	19	517	5.5	8.5	7.0	2.4	600	chr3R	28302029	intergenic	not near genes	chr3R	28302329	intergenic	not near genes	chr3R	28302629	intergenic	not near genes	chr3R_19_28300001	chr3R_28300001	CanS-SH
2499	chr3R	28758221	28758226	chr3R	28763913	28763918	roo	6	5692	30.0	0.0	15.0	0.4	5697	chr3R	28758221	exon	aqrs -	chr3R	28761070	intergenic	not near genes	chr3R	28763918	intergenic	not near genes	chr3R_6_28760001	chr3R_28760001	CanS-SH
2500	chr3R	28758249	28758319	chr3R	28771331	28771401	Stalker4	12	13082	6.5	7.0	6.8	1.5	13152	chr3R	28758249	intergenic	aqrs -	chr3R	28764825	intergenic	not near genes	chr3R	28771401	intergenic	not near genes	chr3R_12_28760001	chr3R_28760001	CanS-SH
2501	chr3R	28763902	28763913	chr3R	28771420	28771431	Stalker4	9	7518	0.0	19.5	9.8	0.8	7529	chr3R	28763902	intergenic	not near genes	chr3R	28767666	intergenic	not near genes	chr3R	28771431	intergenic	not near genes	chr3R_9_28765001	chr3R_28765001	CanS-SH
2502	chr3R	28792784	28792817	chr3R	28797965	28797998	jockey	10	5181	8.0	7.5	7.8	1.1	5214	chr3R	28792784	intergenic	not near genes	chr3R	28795391	intergenic	not near genes	chr3R	28797998	intergenic	not near genes	chr3R_10_28795001	chr3R_28795001	CanS-SH
2510	chr3R	29079312	29079344	chr3R	29080759	29080791	NOF	9	1447	9.5	5.0	7.2	1.1	1479	chr3R	29079312	intron	CG11873 +	chr3R	29080052	intron	CG11873 +	chr3R	29080791	intron	CG11873 +	chr3R_9_29080001	chr3R_29080001	CanS-SH
2521	chr3R	29319755	29319777	chr3R	29320149	29320171	jockey	10	394	18.5	7.0	12.8	0.7	416	chr3R	29319755	intergenic	Cnx99A -	chr3R	29319963	intergenic	Cnx99A -	chr3R	29320171	intergenic	not near genes	chr3R_10_29315001	chr3R_29315001	CanS-SH
2524	chr3R	29406554	29406585	chr3R	29407915	29407946	jockey	10	1361	16.0	10.5	13.2	0.7	1392	chr3R	29406554	intron	Ptp99A +	chr3R	29407250	intron	Ptp99A +	chr3R	29407946	intron	Ptp99A +	chr3R_10_29405001	chr3R_29405001	CanS-SH
2532	chr3R	29738201	29738242	chr3R	29739743	29739784	hobo	15	1542	17.5	7.5	12.5	1.1	1583	chr3R	29738201	intergenic	CG1969 +,CG7598 +	chr3R	29738992	intron	CG1969 +	chr3R	29739784	5` UTR	CG1969 +	chr3R_15_29735001	chr3R_29735001	CanS-SH
2533	chr3R	29760299	29760344	chr3R	29761575	29761619	pogo	22	1276	20.0	0.0	10.0	2.0	1320	chr3R	29760299	intergenic	not near genes	chr3R	29760959	intergenic	not near genes	chr3R	29761619	intergenic	not near genes	chr3R_22_29760001	chr3R_29760001	CanS-SH
2534	chr3R	29881955	29881994	chr3R	29891187	29891226	roo	16	9232	15.5	9.5	12.5	1.2	9271	chr3R	29881955	intron	CG31038 +	chr3R	29886590	intron	CG31038 +	chr3R	29891226	intron	CG31038 +	chr3R_16_29885001	chr3R_29885001	CanS-SH
2542	chr3R	30084782	30084813	chr3R	30086326	30086357	hobo	14	1544	12.0	5.5	8.8	1.4	1575	chr3R	30084782	intron	sima +	chr3R	30085570	intron	sima +	chr3R	30086357	intron	sima +	chr3R_14_30085001	chr3R_30085001	CanS-SH
2544	chr3R	30238701	30238737	chr3R	30239940	30239976	1360	19	1239	14.0	8.5	11.2	1.6	1275	chr3R	30238701	intergenic	not near genes	chr3R	30239338	intergenic	not near genes	chr3R	30239976	intergenic	not near genes	chr3R_19_30235001	chr3R_30235001	CanS-SH
2548	chr3R	30317328	30317346	chr3R	30324995	30325013	roo	6	7667	0.0	17.5	8.8	0.6	7685	chr3R	30317328	intron	hdc +	chr3R	30321170	intron	hdc +	chr3R	30325013	intron	hdc +	chr3R_6_30320001	chr3R_30320001	CanS-SH
2549	chr3R	30375477	30375568	chr3R	30383175	30383266	412	6	7698	7.0	11.0	9.0	0.6	7789	chr3R	30375477	intergenic	not near genes	chr3R	30379372	intergenic	not near genes	chr3R	30383266	intergenic	not near genes	chr3R_6_30375001	chr3R_30375001	CanS-SH
2550	chr3R	30396144	30396190	chr3R	30404486	30404531	roo	5	8342	20.5	7.0	13.8	0.3	8387	chr3R	30396144	intergenic	not near genes	chr3R	30400338	intergenic	not near genes	chr3R	30404531	5` UTR	CR45570 +	chr3R_5_30400001	chr3R_30400001	CanS-SH
2552	chr3R	30480409	30480447	chr3R	30482952	30482990	jockey	11	2543	12.5	8.5	10.5	1.0	2581	chr3R	30480409	intron	PH4alphaEFB +	chr3R	30481700	intron	PH4alphaEFB +	chr3R	30482990	intron	PH4alphaEFB +	chr3R_11_30480001	chr3R_30480001	CanS-SH
2561	chr3R	30679474	30679499	chr3R	30687018	30687043	blood	12	7544	16.0	9.0	12.5	0.9	7569	chr3R	30679474	intergenic	not near genes	chr3R	30683258	intergenic	not near genes	chr3R	30687043	intergenic	not near genes	chr3R_12_30680001	chr3R_30680001	CanS-SH
2565	chr3R	30818749	30818785	chr3R	30820389	30820425	1360	15	1640	18.0	10.0	14.0	1.0	1676	chr3R	30818749	intron	cindr +	chr3R	30819587	intron	cindr +	chr3R	30820425	intron	cindr +	chr3R_15_30815001	chr3R_30815001	CanS-SH
2577	chr3R	31074167	31074261	chr3R	31081840	31081941	springer	15	7676	6.0	5.5	5.8	2.2	7774	chr3R	31074167	intron	Sox100B +	chr3R	31078054	intron	Sox100B +	chr3R	31081941	exon	Sox100B +	chr3R_15_31075001	chr3R_31075001	CanS-SH
2579	chr3R	31279310	31279394	chr3R	31285576	31285659	diver	13	6266	11.0	7.0	9.0	1.3	6349	chr3R	31279310	intergenic	not near genes	chr3R	31282484	intergenic	not near genes	chr3R	31285659	intergenic	not near genes	chr3R_13_31280001	chr3R_31280001	CanS-SH
2580	chr3R	31330346	31330385	chr3R	31335636	31335674	copia	8	5290	11.0	3.0	7.0	1.0	5328	chr3R	31330346	intron	CG34347 +	chr3R	31333010	intron	CG34347 +	chr3R	31335674	intron	CG34347 +	chr3R_8_31330001	chr3R_31330001	CanS-SH
2589	chr3R	31691490	31691505	chr3R	31696331	31696346	Doc	6	4841	13.0	13.0	13.0	0.4	4856	chr3R	31691490	intergenic	not near genes	chr3R	31693918	intergenic	not near genes	chr3R	31696346	intergenic	not near genes	chr3R_6_31690001	chr3R_31690001	CanS-SH
2593	chr3R	31997933	31997970	chr3R	32005478	32005515	blood	11	7545	12.0	9.5	10.8	0.9	7582	chr3R	31997933	intron	heph -	chr3R	32001724	intron	heph -	chr3R	32005515	intron	heph -	chr3R_11_32000001	chr3R_32000001	CanS-SH
2594	chr4	76441	76470	chr4	81959	81988	I-element	7	5518	13.5	7.5	10.5	0.6	5547	chr4	76441	intron	pan +	chr4	79214	intron	pan +	chr4	81988	intron	pan +	chr4_7_75001	chr4_75001	CanS-SH
2597	chr4	319943	319964	chr4	328194	328215	Stalker2	7	8251	14.5	9.0	11.8	0.5	8272	chr4	319943	3` UTR	CG32850 +	chr4	324079	intron	CG32850 +	chr4	328215	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_7_320001	chr4_320001	CanS-SH
2600	chr4	671550	671580	chr4	680208	680238	Tirant	15	8658	17.5	13.0	15.2	0.9	8688	chr4	671550	intron	CG11360 +	chr4	675894	intron	CG11360 +	chr4	680238	intron	CG11360 +	chr4_15_675001	chr4_675001	CanS-SH
2603	chrX	295791	295830	chrX	303486	303525	412	12	7695	10.0	7.0	8.5	1.3	7734	chrX	295791	intron	CG3777 +	chrX	299658	intron	CG3777 +	chrX	303525	intron	CG3777 +	chrX_12_295001	chrX_295001	CanS-SH
2604	chrX	318417	318443	chrX	323578	323604	flea	11	5161	13.0	10.5	11.8	0.9	5187	chrX	318417	intron,intron	CG3777 +,CG32816 -	chrX	321010	intron,intron	CG3777 +,CG32816 -	chrX	323604	intron,intron	CG3777 +,CG32816 -	chrX_11_320001	chrX_320001	CanS-SH
2606	chrX	428362	428393	chrX	434621	434653	3S18	10	6260	19.0	7.5	13.2	0.7	6291	chrX	428362	intron	CG32816 -	chrX	431508	intron	CG32816 -	chrX	434653	intron	CG32816 -	chrX_10_430001	chrX_430001	CanS-SH
2607	chrX	551369	551392	chrX	559006	559029	412	9	7637	12.0	7.0	9.5	0.9	7660	chrX	551369	intron	Appl +	chrX	555199	intron	Appl +	chrX	559029	intron	Appl +	chrX_9_555001	chrX_555001	CanS-SH
2610	chrX	812208	812244	chrX	817914	817950	297	10	5706	10.5	9.5	10.0	0.9	5742	chrX	812208	intron	CG43867 -	chrX	815079	intron	CG43867 -	chrX	817950	intron	CG43867 -	chrX_10_815001	chrX_815001	CanS-SH
2611	chrX	906627	906720	chrX	908491	908584	S-element	17	1864	4.0	5.0	4.5	3.1	1957	chrX	906627	intron	CG43867 -	chrX	907606	intron	CG43867 -	chrX	908584	intron	CG43867 -	chrX_17_905001	chrX_905001	CanS-SH
2613	chrX	1033288	1033322	chrX	1040996	1041030	412	4	7708	11.0	4.0	7.5	0.5	7742	chrX	1033288	intron	su(w[a]) +	chrX	1037159	intron	su(w[a]) +	chrX	1041030	intron	su(w[a]) +	chrX_4_1035001	chrX_1035001	CanS-SH
2615	chrX	1063698	1063733	chrX	1072566	1072601	roo	10	8868	16.0	6.5	11.2	0.8	8903	chrX	1063698	intron	CR44779 +	chrX	1068150	intron	CR44779 +	chrX	1072601	intron	CR44779 +	chrX_10_1065001	chrX_1065001	CanS-SH
2616	chrX	1357713	1357752	chrX	1367958	1367997	Doc	10	10245	18.0	11.0	14.5	0.6	10284	chrX	1357713	intergenic	png -	chrX	1362855	intergenic	not near genes	chrX	1367997	intergenic	not near genes	chrX_10_1360001	chrX_1360001	CanS-SH
2618	chrX	1517982	1518016	chrX	1523459	1523493	jockey	8	5477	9.0	8.0	8.5	0.8	5511	chrX	1517982	intergenic	inc +	chrX	1520738	intergenic	not near genes	chrX	1523493	intergenic	not near genes	chrX_8_1520001	chrX_1520001	CanS-SH
2620	chrX	1930474	1930505	chrX	1938120	1938151	opus	12	7646	16.5	11.5	14.0	0.8	7677	chrX	1930474	3` UTR	CG11596 +	chrX	1934312	intergenic	not near genes	chrX	1938151	3` UTR	CG3857 -	chrX_12_1930001	chrX_1930001	CanS-SH
2621	chrX	1954839	1954863	chrX	1962854	1962878	Stalker2	5	8015	8.0	8.5	8.2	0.5	8039	chrX	1954839	intron	Hr4 +	chrX	1958858	intron	Hr4 +	chrX	1962878	intron	Hr4 +	chrX_5_1955001	chrX_1955001	CanS-SH
2624	chrX	2399777	2399814	chrX	2408205	2408242	roo	20	8428	10.0	11.0	10.5	1.7	8465	chrX	2399777	intergenic	not near genes	chrX	2404010	intergenic	not near genes	chrX	2408242	intergenic	not near genes	chrX_20_2400001	chrX_2400001	CanS-SH
2630	chrX	2610321	2610362	chrX	2617513	2617554	HMS-Beagle	4	7192	11.0	8.0	9.5	0.4	7233	chrX	2610321	5` UTR	CG8636 -	chrX	2613938	intergenic	not near genes	chrX	2617554	intergenic	Tsp3A -	chrX_4_2610001	chrX_2610001	CanS-SH
2631	chrX	2664325	2664360	chrX	2665546	2665581	1360	8	1221	11.5	6.5	9.0	0.8	1256	chrX	2664325	intron	sgg +	chrX	2664953	intron	sgg +	chrX	2665581	intron	sgg +	chrX_8_2660001	chrX_2660001	CanS-SH
2634	chrX	2844841	2844875	chrX	2852326	2852360	mdg1	10	7485	12.0	8.0	10.0	0.9	7519	chrX	2844841	intron	kirre +	chrX	2848600	intron	kirre +	chrX	2852360	intron	kirre +	chrX_10_2845001	chrX_2845001	CanS-SH
2642	chrX	3057960	3057988	chrX	3058276	3058304	pogo	10	316	16.0	7.0	11.5	0.8	344	chrX	3057960	intron	kirre +	chrX	3058132	intron	kirre +	chrX	3058304	intron	kirre +	chrX_10_3055001	chrX_3055001	CanS-SH
2645	chrX	3178435	3178444	chrX	3186173	3186182	opus	4	7738	11.0	9.5	10.2	0.4	7747	chrX	3178435	intron	dnc +	chrX	3182308	intron	dnc +	chrX	3186182	intron	dnc +	chrX_4_3180001	chrX_3180001	CanS-SH
2656	chrX	3493030	3493066	chrX	3502264	3502300	roo	9	9234	11.0	3.0	7.0	1.1	9270	chrX	3493030	intron,exon	CR44999 +,Gas8 -	chrX	3497665	intron,intron	CR44999 +,Gas8 -	chrX	3502300	intron,intron	CR44999 +,Gas8 -	chrX_9_3495001	chrX_3495001	CanS-SH
2659	chrX	3597488	3597528	chrX	3619731	3619771	roo	12	22243	17.5	9.0	13.2	0.8	22283	chrX	3597488	intron	AstA-R1 +	chrX	3608630	intron	AstA-R1 +	chrX	3619771	intron	AstA-R1 +	chrX_12_3605001	chrX_3605001	CanS-SH
2662	chrX	3726705	3726741	chrX	3730177	3730213	NOF	16	3472	0.0	3.0	1.5	6.4	3508	chrX	3726705	intron	tlk +	chrX	3728459	intron	tlk +	chrX	3730213	intron	tlk +	chrX_16_3725001	chrX_3725001	CanS-SH
2664	chrX	3842263	3842295	chrX	3842579	3842611	pogo	14	316	9.0	10.0	9.5	1.3	348	chrX	3842263	intron	ec +	chrX	3842437	intron	ec +	chrX	3842611	intron	ec +	chrX_14_3840001	chrX_3840001	CanS-SH
2672	chrX	4157833	4157869	chrX	4164943	4164979	297	10	7110	9.0	5.0	7.0	1.2	7146	chrX	4157833	intron	Fas2 -	chrX	4161406	intron	Fas2 -	chrX	4164979	intron	Fas2 -	chrX_10_4160001	chrX_4160001	CanS-SH
2685	chrX	4700327	4700368	chrX	4700745	4700786	jockey	16	418	10.5	6.5	8.5	1.7	459	chrX	4700327	3` UTR	ctp +	chrX	4700556	3` UTR	ctp +	chrX	4700786	3` UTR	ctp +	chrX_16_4700001	chrX_4700001	CanS-SH
2687	chrX	4763193	4763220	chrX	4763756	4763783	Stalker4	7	563	11.5	3.0	7.2	0.9	590	chrX	4763193	intergenic	not near genes	chrX	4763488	intergenic	not near genes	chrX	4763783	intergenic	not near genes	chrX_7_4760001	chrX_4760001	CanS-SH
2688	chrX	4792326	4792350	chrX	4792834	4792858	jockey	7	508	8.0	6.5	7.2	0.9	532	chrX	4792326	intergenic	not near genes	chrX	4792592	intergenic	not near genes	chrX	4792858	intergenic	not near genes	chrX_7_4790001	chrX_4790001	CanS-SH
2689	chrX	4827915	4827940	chrX	4835361	4835386	Stalker4	5	7446	16.0	7.0	11.5	0.4	7471	chrX	4827915	intergenic	not near genes	chrX	4831650	intergenic	not near genes	chrX	4835386	intergenic	not near genes	chrX_5_4830001	chrX_4830001	CanS-SH
2693	chrX	5096224	5096248	chrX	5103864	5103888	springer	7	7640	1.5	9.5	5.5	1.1	7664	chrX	5096224	intron,intron	CG15465 +,rg +	chrX	5100056	intron,intron	CG15465 +,rg +	chrX	5103888	intron,intron	CG15465 +,rg +	chrX_7_5100001	chrX_5100001	CanS-SH
2699	chrX	5338647	5338677	chrX	5339975	5340005	jockey	10	1328	8.5	1.5	5.0	1.7	1358	chrX	5338647	intergenic	not near genes	chrX	5339326	intergenic	not near genes	chrX	5340005	intergenic	SK +	chrX_10_5335001	chrX_5335001	CanS-SH
2707	chrX	5524784	5524807	chrX	5528718	5528741	412	6	3934	16.0	6.5	11.2	0.5	3957	chrX	5524784	intergenic	snoRNA:Psi28S-3342 -	chrX	5526762	intergenic	not near genes	chrX	5528741	intergenic	Vsx2 -	chrX_6_5525001	chrX_5525001	CanS-SH
2708	chrX	5537643	5537682	chrX	5537801	5537840	roo	8	158	12.0	5.5	8.8	0.8	197	chrX	5537643	intron	Vsx2 -	chrX	5537742	intron	Vsx2 -	chrX	5537840	intron	Vsx2 -	chrX_8_5535001	chrX_5535001	CanS-SH
2711	chrX	5727349	5727415	chrX	5732163	5732229	Doc	11	4814	3.5	8.0	5.8	1.6	4880	chrX	5727349	intron	CG32758 -	chrX	5729789	intron	CG32758 -	chrX	5732229	intron	CG32758 -	chrX_11_5725001	chrX_5725001	CanS-SH
2712	chrX	5883745	5883783	chrX	5884061	5884099	pogo	8	316	18.0	2.5	10.2	0.7	354	chrX	5883745	intron	CR45668 -	chrX	5883922	intron	CR45668 -	chrX	5884099	intron	CR45668 -	chrX_8_5880001	chrX_5880001	CanS-SH
2713	chrX	5884104	5884135	chrX	5884420	5884451	pogo	8	316	2.5	8.5	5.5	1.2	347	chrX	5884104	intron	CR45668 -	chrX	5884278	intron	CR45668 -	chrX	5884451	intron	CR45668 -	chrX_8_5880001	chrX_5880001	CanS-SH
2716	chrX	6171522	6171559	chrX	6179030	6179067	Quasimodo	6	7508	16.5	9.5	13.0	0.4	7545	chrX	6171522	intron	Ca-alpha1T -	chrX	6175294	intron	Ca-alpha1T -	chrX	6179067	intron	Ca-alpha1T -	chrX_6_6175001	chrX_6175001	CanS-SH
2722	chrX	6392817	6392846	chrX	6397657	6397686	Doc	8	4840	9.0	7.5	8.2	0.9	4869	chrX	6392817	intergenic	not near genes	chrX	6395252	intergenic	not near genes	chrX	6397686	intergenic	not near genes	chrX_8_6395001	chrX_6395001	CanS-SH
2723	chrX	6445245	6445273	chrX	6451078	6451106	297	10	5833	10.5	7.5	9.0	1.0	5861	chrX	6445245	intron	CG42340 -	chrX	6448176	intron	CG42340 -	chrX	6451106	intron	CG42340 -	chrX_10_6445001	chrX_6445001	CanS-SH
2725	chrX	6562776	6562793	chrX	6571332	6571350	Tirant	6	8557	12.0	6.0	9.0	0.6	8574	chrX	6562776	intron	CG34417 +	chrX	6567063	intron	CG34417 +	chrX	6571350	intron	CG34417 +	chrX_6_6565001	chrX_6565001	CanS-SH
2728	chrX	6605423	6605454	chrX	6608520	6608551	Burdock	8	3097	10.0	12.0	11.0	0.7	3128	chrX	6605423	intron	pigs +	chrX	6606987	intron	pigs +	chrX	6608551	intron	pigs +	chrX_8_6605001	chrX_6605001	CanS-SH
2743	chrX	7023543	7023579	chrX	7031008	7031044	Tabor	6	7465	17.0	11.0	14.0	0.4	7501	chrX	7023543	intron	CG12541 -	chrX	7027294	intron	CG12541 -	chrX	7031044	intron	CG12541 -	chrX_6_7025001	chrX_7025001	CanS-SH
2748	chrX	7702843	7702874	chrX	7703357	7703388	jockey	9	514	16.5	5.5	11.0	0.8	545	chrX	7702843	intron	CHES-1-like -	chrX	7703116	intron	CHES-1-like -	chrX	7703388	intron	CHES-1-like -	chrX_9_7700001	chrX_7700001	CanS-SH
2750	chrX	7845660	7845704	chrX	7847226	7847270	hopper2	5	1566	10.5	5.5	8.0	0.6	1610	chrX	7845660	intergenic	not near genes	chrX	7846465	intergenic	not near genes	chrX	7847270	intergenic	not near genes	chrX_5_7845001	chrX_7845001	CanS-SH
2755	chrX	8031371	8031401	chrX	8035755	8035785	Juan	11	4384	0.0	5.5	2.8	2.9	4414	chrX	8031371	intergenic	not near genes	chrX	8033578	intergenic	not near genes	chrX	8035785	3` UTR	CG2233 -	chrX_11_8030001	chrX_8030001	CanS-SH
2763	chrX	8922266	8922306	chrX	8922775	8922815	jockey	8	509	14.0	7.5	10.8	0.7	549	chrX	8922266	intron	rdgA +	chrX	8922540	intron	rdgA +	chrX	8922815	intron	rdgA +	chrX_8_8920001	chrX_8920001	CanS-SH
2765	chrX	8948714	8948736	chrX	8956299	8956321	roo	4	7585	0.0	11.0	5.5	0.6	7607	chrX	8948714	intron	rdgA +	chrX	8952518	intron	rdgA +	chrX	8956321	intron	rdgA +	chrX_4_8950001	chrX_8950001	CanS-SH
2775	chrX	9575738	9575769	chrX	9576137	9576168	mdg3	6	399	12.5	11.0	11.8	0.5	430	chrX	9575738	intron,exon	CG32699 -,CG42395 -	chrX	9575953	intron,intron	CG32699 -,CG42395 -	chrX	9576168	intron,5` UTR	CG32699 -,CG42395 -	chrX_6_9575001	chrX_9575001	CanS-SH
2776	chrX	9798481	9798490	chrX	9805606	9805617	297	4	7126	15.0	1.5	8.2	0.4	7136	chrX	9798481	intron	CG32698 +	chrX	9802049	intron	CG32698 +	chrX	9805617	intron	CG32698 +	chrX_4_9800001	chrX_9800001	CanS-SH
2783	chrX	10138152	10138188	chrX	10145731	10145767	412	14	7579	14.0	7.5	10.8	1.2	7615	chrX	10138152	intron,intron	RhoU +,CR44894 -	chrX	10141960	intron,intron	RhoU +,CR44894 -	chrX	10145767	intron,intron	RhoU +,CR44894 -	chrX_14_10140001	chrX_10140001	CanS-SH
2785	chrX	10348736	10348776	chrX	10356376	10356415	springer	12	7640	5.5	6.0	5.8	1.8	7679	chrX	10348736	intergenic	snoRNA:U3:9B +	chrX	10352576	intergenic	not near genes	chrX	10356415	intergenic	l(1)G0289 -	chrX_12_10350001	chrX_10350001	CanS-SH
2790	chrX	10550795	10550834	chrX	10552337	10552376	hobo	13	1542	9.5	7.5	8.5	1.4	1581	chrX	10550795	intron	spri -	chrX	10551586	intron	spri -	chrX	10552376	intron	spri -	chrX_13_10550001	chrX_10550001	CanS-SH
2792	chrX	10685991	10686028	chrX	10691203	10691240	roo	8	5212	12.5	5.5	9.0	0.8	5249	chrX	10685991	intron	X11Lbeta +	chrX	10688616	intron	X11Lbeta +	chrX	10691240	intron	X11Lbeta +	chrX_8_10685001	chrX_10685001	CanS-SH
2794	chrX	10772609	10772695	chrX	10772767	10772853	Tirant	22	158	7.5	7.0	7.2	2.7	244	chrX	10772609	5` UTR	CG15211 +	chrX	10772731	intron	CG15211 +	chrX	10772853	intron	CG15211 +	chrX_22_10770001	chrX_10770001	CanS-SH
2796	chrX	11095945	11095966	chrX	11103122	11103143	HMS-Beagle	8	7177	9.0	9.5	9.2	0.8	7198	chrX	11095945	intergenic	not near genes	chrX	11099544	intergenic	not near genes	chrX	11103143	intron	CG42249 +	chrX_8_11095001	chrX_11095001	CanS-SH
2797	chrX	11184189	11184220	chrX	11189340	11189371	flea	6	5151	9.5	8.0	8.8	0.6	5182	chrX	11184189	intergenic	not near genes	chrX	11186780	intergenic	not near genes	chrX	11189371	intergenic	not near genes	chrX_6_11185001	chrX_11185001	CanS-SH
2798	chrX	11194370	11194381	chrX	11201866	11201877	gypsy5	6	7496	9.5	10.0	9.8	0.6	7507	chrX	11194370	intergenic	not near genes	chrX	11198124	intergenic	not near genes	chrX	11201877	intergenic	CG11106 +	chrX_6_11195001	chrX_11195001	CanS-SH
2799	chrX	11311998	11312036	chrX	11319426	11319464	Stalker2	9	7428	12.5	5.5	9.0	0.9	7466	chrX	11311998	intergenic	not near genes	chrX	11315731	intergenic	not near genes	chrX	11319464	intergenic	not near genes	chrX_9_11315001	chrX_11315001	CanS-SH
2802	chrX	11534975	11535013	chrX	11541520	11541558	Burdock	13	6545	19.0	8.5	13.8	0.9	6583	chrX	11534975	intron	Drak +	chrX	11538266	intron	Drak +	chrX	11541558	intron	Drak +	chrX_13_11535001	chrX_11535001	CanS-SH
2803	chrX	11633357	11633392	chrX	11640486	11640521	297	11	7129	13.5	9.0	11.2	0.9	7164	chrX	11633357	intron	Ptp10D +	chrX	11636939	intron	Ptp10D +	chrX	11640521	intron	Ptp10D +	chrX_11_11635001	chrX_11635001	CanS-SH
2804	chrX	11645049	11645079	chrX	11648293	11648323	NOF	6	3244	9.5	9.5	9.5	0.6	3274	chrX	11645049	intron	Ptp10D +	chrX	11646686	intron	Ptp10D +	chrX	11648323	intron	Ptp10D +	chrX_6_11645001	chrX_11645001	CanS-SH
2812	chrX	12168077	12168111	chrX	12173594	12173628	I-element	9	5517	8.0	0.0	4.0	1.8	5551	chrX	12168077	intron	Ten-a +	chrX	12170852	intron	Ten-a +	chrX	12173628	intron	Ten-a +	chrX_9_12170001	chrX_12170001	CanS-SH
2818	chrX	12381822	12381840	chrX	12385799	12385817	flea	5	3977	16.5	3.5	10.0	0.5	3995	chrX	12381822	intergenic	not near genes	chrX	12383820	intergenic	not near genes	chrX	12385817	intergenic	not near genes	chrX_5_12380001	chrX_12380001	CanS-SH
2829	chrX	12930525	12930553	chrX	12937716	12937744	HMS-Beagle	5	7191	13.5	11.5	12.5	0.4	7219	chrX	12930525	intron	fne +	chrX	12934134	intron	fne +	chrX	12937744	intron	fne +	chrX_5_12930001	chrX_12930001	CanS-SH
2837	chrX	13401416	13401461	chrX	13401843	13401888	jockey	8	427	2.5	5.0	3.8	1.7	472	chrX	13401416	intergenic	CG1673 +,CG12725 -	chrX	13401652	intergenic	CG12725 -,CG1673 +	chrX	13401888	3` UTR	CG12725 -	chrX_8_13400001	chrX_13400001	CanS-SH
2838	chrX	13429388	13429420	chrX	13430612	13430644	jockey	15	1224	7.0	6.0	6.5	2.0	1256	chrX	13429388	intergenic	not near genes	chrX	13430016	intergenic	not near genes	chrX	13430644	intergenic	not near genes	chrX_15_13430001	chrX_13430001	CanS-SH
2840	chrX	13463587	13463621	chrX	13469239	13469273	mdg3	7	5652	3.5	8.5	6.0	1.0	5686	chrX	13463587	intron	Neto +	chrX	13466430	intron	Neto +	chrX	13469273	intron	Neto +	chrX_7_13465001	chrX_13465001	CanS-SH
2843	chrX	13937915	13937946	chrX	13941261	13941292	I-element	14	3346	12.5	4.0	8.2	1.5	3377	chrX	13937915	intron	mamo -	chrX	13939604	intron	mamo -	chrX	13941292	intron	mamo -	chrX_14_13935001	chrX_13935001	CanS-SH
2845	chrX	14030680	14030717	chrX	14035341	14035378	copia	10	4661	16.0	4.5	10.2	0.9	4698	chrX	14030680	intergenic	not near genes	chrX	14033029	intergenic	not near genes	chrX	14035378	intergenic	not near genes	chrX_10_14030001	chrX_14030001	CanS-SH
2847	chrX	14104962	14104997	chrX	14114188	14114223	roo	10	9226	13.5	5.5	9.5	1.0	9261	chrX	14104962	intergenic	not near genes	chrX	14109592	intergenic	not near genes	chrX	14114223	5` UTR	CR44657 +	chrX_10_14105001	chrX_14105001	CanS-SH
2850	chrX	14157528	14157542	chrX	14163260	14163273	297	5	5732	17.0	7.0	12.0	0.4	5745	chrX	14157528	intergenic	not near genes	chrX	14160400	intergenic	not near genes	chrX	14163273	intergenic	not near genes	chrX_5_14160001	chrX_14160001	CanS-SH
2859	chrX	14416254	14416277	chrX	14421096	14421119	F-element	7	4842	9.0	4.0	6.5	0.9	4865	chrX	14416254	intron	dpr8 +	chrX	14418686	intron	dpr8 +	chrX	14421119	intron	dpr8 +	chrX_7_14415001	chrX_14415001	CanS-SH
2863	chrX	14636403	14636436	chrX	14641919	14641952	I-element	10	5516	11.0	7.5	9.2	1.0	5549	chrX	14636403	intron	NetA -	chrX	14639178	intron	NetA -	chrX	14641952	intron	NetA -	chrX_10_14635001	chrX_14635001	CanS-SH
2868	chrX	14777984	14778002	chrX	14782856	14782874	Doc	9	4872	13.5	8.5	11.0	0.8	4890	chrX	14777984	intergenic	CG5347 +	chrX	14780429	intergenic	not near genes	chrX	14782874	intergenic	Ag5r2 -	chrX_9_14780001	chrX_14780001	CanS-SH
2870	chrX	14818700	14818742	chrX	14823979	14824021	copia	16	5279	15.5	13.5	14.5	1.0	5321	chrX	14818700	intron	rut -	chrX	14821360	intron	rut -	chrX	14824021	intron	rut -	chrX_16_14820001	chrX_14820001	CanS-SH
2871	chrX	14936797	14936836	chrX	14946129	14946168	roo	12	9332	14.0	7.5	10.8	1.0	9371	chrX	14936797	intron	pdgy -	chrX	14941482	intron	pdgy -	chrX	14946168	intron	pdgy -	chrX_12_14940001	chrX_14940001	CanS-SH
2876	chrX	15034042	15034065	chrX	15041644	15041667	rover	10	7603	8.5	6.5	7.5	1.2	7625	chrX	15034042	intron,3` UTR	hiw -,be +	chrX	15037854	intron,intron	hiw -,be +	chrX	15041667	intron,3` UTR	hiw -,be +	chrX_10_15035001	chrX_15035001	CanS-SH
2885	chrX	15273656	15273685	chrX	15274898	15274927	1360	16	1242	14.5	8.5	11.5	1.3	1271	chrX	15273656	intergenic	not near genes	chrX	15274292	intergenic	not near genes	chrX	15274927	intergenic	not near genes	chrX_16_15270001	chrX_15270001	CanS-SH
2887	chrX	15326674	15326714	chrX	15326947	15326987	I-element	6	273	2.5	5.5	4.0	1.2	313	chrX	15326674	3` UTR	Top1 +	chrX	15326830	3` UTR	Top1 +	chrX	15326987	3` UTR	Top1 +	chrX_6_15325001	chrX_15325001	CanS-SH
2889	chrX	15412990	15413025	chrX	15417367	15417401	Juan	10	4377	14.5	0.0	7.2	1.2	4411	chrX	15412990	intron	Cngl -	chrX	15415196	intron	Cngl -	chrX	15417401	intron	Cngl -	chrX_10_15415001	chrX_15415001	CanS-SH
2890	chrX	15435609	15435626	chrX	15436119	15436134	rover	8	508	12.0	6.5	9.2	0.8	525	chrX	15435609	intron	Cngl -	chrX	15435872	intron	Cngl -	chrX	15436134	intron	Cngl -	chrX_8_15435001	chrX_15435001	CanS-SH
2901	chrX	16222741	16222799	chrX	16231166	16231224	roo	7	8425	0.0	13.0	6.5	0.9	8483	chrX	16222741	intergenic	not near genes	chrX	16226982	intergenic	not near genes	chrX	16231224	intergenic	not near genes	chrX_7_16225001	chrX_16225001	CanS-SH
2903	chrX	16245878	16245925	chrX	16246060	16246107	INE-1	24	182	13.0	5.0	9.0	2.4	229	chrX	16245878	intergenic	not near genes	chrX	16245992	intergenic	not near genes	chrX	16246107	intergenic	not near genes	chrX_24_16245001	chrX_16245001	CanS-SH
2907	chrX	16340593	16340625	chrX	16349823	16349855	roo	13	9230	16.5	6.0	11.2	1.1	9262	chrX	16340593	3` UTR	Dsp1 +	chrX	16345224	intergenic	not near genes	chrX	16349855	intergenic	sl +	chrX_13_16345001	chrX_16345001	CanS-SH
2909	chrX	16492586	16492624	chrX	16498238	16498276	mdg3	9	5652	8.0	9.5	8.8	0.9	5690	chrX	16492586	intron	para -	chrX	16495431	intron	para -	chrX	16498276	exon	para -	chrX_9_16495001	chrX_16495001	CanS-SH
2926	chrX	16935935	16935968	chrX	16936428	16936461	jockey	4	493	11.5	3.0	7.2	0.5	526	chrX	16935935	intron	CG4928 +	chrX	16936198	intron	CG4928 +	chrX	16936461	intron	CG4928 +	chrX_4_16935001	chrX_16935001	CanS-SH
2932	chrX	17057887	17057914	chrX	17058203	17058230	pogo	11	316	1.5	6.0	3.8	2.3	343	chrX	17057887	intron	CG45002 -	chrX	17058058	intron	CG45002 -	chrX	17058230	intron	CG45002 -	chrX_11_17055001	chrX_17055001	CanS-SH
2935	chrX	17195146	17195176	chrX	17200307	17200337	flea	9	5161	15.5	7.5	11.5	0.7	5191	chrX	17195146	3` UTR	baz +	chrX	17197742	3` UTR	baz +	chrX	17200337	3` UTR	baz +	chrX_9_17195001	chrX_17195001	CanS-SH
2943	chrX	17431291	17431331	chrX	17431707	17431747	jockey	10	416	13.5	2.0	7.8	1.1	456	chrX	17431291	intron	CG12994 -	chrX	17431519	intron	CG12994 -	chrX	17431747	intron	CG12994 -	chrX_10_17430001	chrX_17430001	CanS-SH
2958	chrX	18194006	18194047	chrX	18194616	18194657	BS	9	610	11.0	6.5	8.8	0.9	651	chrX	18194006	intron	Frq2 +	chrX	18194332	intron	Frq2 +	chrX	18194657	intron	Frq2 +	chrX_9_18190001	chrX_18190001	CanS-SH
2962	chrX	18429432	18429469	chrX	18434817	18434855	Transpac	11	5386	8.5	9.5	9.0	1.1	5423	chrX	18429432	intergenic	not near genes	chrX	18432144	intergenic	not near genes	chrX	18434855	intergenic	not near genes	chrX_11_18430001	chrX_18430001	CanS-SH
2971	chrX	18754273	18754305	chrX	18758015	18758047	297	6	3742	7.0	7.5	7.2	0.7	3774	chrX	18754273	intergenic	not near genes	chrX	18756160	intergenic	not near genes	chrX	18758047	intergenic	not near genes	chrX_6_18755001	chrX_18755001	CanS-SH
2974	chrX	18957008	18957040	chrX	18965745	18965778	roo	14	8738	3.5	7.5	5.5	2.2	8770	chrX	18957008	intron	CG43759 +	chrX	18961393	intron	CG43759 +	chrX	18965778	intron	CG43759 +	chrX_14_18960001	chrX_18960001	CanS-SH
2976	chrX	19060349	19060384	chrX	19065208	19065243	Doc	12	4859	13.0	8.0	10.5	1.0	4894	chrX	19060349	intron	CG14190 +	chrX	19062796	intron	CG14190 +	chrX	19065243	intron	CG14190 +	chrX_12_19060001	chrX_19060001	CanS-SH
2983	chrX	19136486	19136520	chrX	19143481	19143515	412	10	6995	9.0	10.0	9.5	1.0	7029	chrX	19136486	intergenic	not near genes	chrX	19140000	intergenic	not near genes	chrX	19143515	3` UTR	RhoGAP18B -	chrX_10_19140001	chrX_19140001	CanS-SH
2986	chrX	19356932	19357020	chrX	19358448	19358554	NOF	13	1530	6.0	0.0	3.0	3.2	1622	chrX	19356932	intron	kek5 +	chrX	19357743	intron	kek5 +	chrX	19358554	intron	kek5 +	chrX_13_19355001	chrX_19355001	CanS-SH
2987	chrX	19380093	19380133	chrX	19380409	19380449	pogo	11	316	12.0	5.5	8.8	1.1	356	chrX	19380093	intron	kek5 +	chrX	19380271	intron	kek5 +	chrX	19380449	intron	kek5 +	chrX_11_19380001	chrX_19380001	CanS-SH
2989	chrX	19437220	19437245	chrX	19444814	19444839	Idefix	6	7594	10.0	6.5	8.2	0.7	7619	chrX	19437220	intron	kek5 +	chrX	19441030	intron	kek5 +	chrX	19444839	intron	kek5 +	chrX_6_19440001	chrX_19440001	CanS-SH
2991	chrX	19472061	19472104	chrX	19472705	19472748	jockey	6	644	10.0	6.5	8.2	0.7	687	chrX	19472061	intergenic	kek5 +	chrX	19472404	intergenic	kek5 +	chrX	19472748	intergenic	not near genes	chrX_6_19470001	chrX_19470001	CanS-SH
2996	chrX	19710013	19710089	chrX	19711874	19711950	S-element	10	1861	10.0	10.5	10.2	0.9	1937	chrX	19710013	intron	meso18E -	chrX	19710982	intron	meso18E -	chrX	19711950	5` UTR	meso18E -	chrX_10_19710001	chrX_19710001	CanS-SH
2999	chrX	19797286	19797325	chrX	19804674	19804713	Stalker4	6	7388	16.0	6.5	11.2	0.5	7427	chrX	19797286	intergenic	not near genes	chrX	19801000	intergenic	not near genes	chrX	19804713	intergenic	not near genes	chrX_6_19800001	chrX_19800001	CanS-SH
3018	chrX	20377255	20377278	chrX	20378797	20378820	hobo	7	1542	15.0	7.0	11.0	0.6	1565	chrX	20377255	intergenic	not near genes	chrX	20378038	intergenic	not near genes	chrX	20378820	intergenic	not near genes	chrX_7_20375001	chrX_20375001	CanS-SH
3026	chrX	20504071	20504098	chrX	20505667	20505694	transib2	11	1596	17.5	8.0	12.8	0.8	1623	chrX	20504071	intron	RhoGAP19D -	chrX	20504882	intron	RhoGAP19D -	chrX	20505694	intron	RhoGAP19D -	chrX_11_20500001	chrX_20500001	CanS-SH
3033	chrX	20836677	20836693	chrX	20844354	20844370	roo	6	7677	3.5	4.0	3.8	1.2	7693	chrX	20836677	intron	shakB -	chrX	20840524	intron	shakB -	chrX	20844370	intron	shakB -	chrX_6_20840001	chrX_20840001	CanS-SH
3035	chrX	20940662	20940687	chrX	20942206	20942231	hobo	5	1544	12.0	4.0	8.0	0.6	1569	chrX	20940662	intergenic	not near genes	chrX	20941446	intergenic	not near genes	chrX	20942231	intergenic	not near genes	chrX_5_20940001	chrX_20940001	CanS-SH
3036	chrX	20956899	20956947	chrX	20962418	20962466	I-element	6	5519	7.0	3.5	5.2	1.0	5567	chrX	20956899	intergenic	not near genes	chrX	20959682	intergenic	not near genes	chrX	20962466	intergenic	Ser6 -	chrX_6_20955001	chrX_20955001	CanS-SH