SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47481 47488 chr2L 52566 52593 jockey 4 5099 8.5 3.0 5.8 0.6 5112 chr2L 47481 intron Cda5 - chr2L 50037 intron Cda5 - chr2L 52593 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-93 2 chr2L 91180 91209 chr2L 91254 91285 10 76 5.0 4.0 4.5 1.8 105 chr2L 91180 intergenic not near genes chr2L 91232 intergenic not near genes chr2L 91285 intergenic not near genes chr2L_10_90001 chr2L_90001 RAL-93 3 chr2L 119737 119760 chr2L 119814 119837 7 75 1.0 2.5 1.8 2.5 100 chr2L 119737 intron,intron CG11455 +,CG4822 - chr2L 119787 intron,intron CG11455 +,CG4822 - chr2L 119837 intron,exon CG11455 +,CG4822 - chr2L_7_115001 chr2L_115001 RAL-93 4 chr2L 127502 127521 chr2L 127595 127615 5 93 2.5 6.5 4.5 0.9 113 chr2L 127502 intron,intron CG11455 +,CG3164 - chr2L 127558 intron,intron CG11455 +,CG3164 - chr2L 127615 intron,intron CG11455 +,CG3164 - chr2L_5_125001 chr2L_125001 RAL-93 5 chr2L 179459 179483 chr2L 179542 179566 6 81 3.5 2.0 2.8 1.6 107 chr2L 179459 intron spen + chr2L 179512 intron spen + chr2L 179566 intron spen + chr2L_6_175001 chr2L_175001 RAL-93 6 chr2L 180295 180325 chr2L 180463 180493 10 167 5.0 3.5 4.2 1.9 198 chr2L 180295 intron spen + chr2L 180394 intron spen + chr2L 180493 intron spen + chr2L_10_180001 chr2L_180001 RAL-93 7 chr2L 297708 297719 chr2L 297787 297819 4 94 0.5 5.0 2.8 1.1 111 chr2L 297708 intergenic Pi3K21B +,Hop + chr2L 297764 intergenic Pi3K21B +,Hop + chr2L 297819 intergenic Pi3K21B +,Hop + chr2L_4_295001 chr2L_295001 RAL-93 8 chr2L 325149 325154 chr2L 325226 325228 4 76 6.5 9.0 7.8 0.5 79 chr2L 325149 intron Plc21C + chr2L 325188 intron Plc21C + chr2L 325228 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-93 9 chr2L 347887 347919 chr2L 355387 355419 blood 7 7499 1.0 1.0 1.0 3.5 7532 chr2L 347887 3` UTR Plc21C + chr2L 351653 intron Plc21C + chr2L 355419 3` UTR Plc21C + chr2L_7_350001 chr2L_350001 RAL-93 10 chr2L 750023 750045 chr2L 750145 750168 5 122 2.5 4.0 3.2 1.2 145 chr2L 750023 5` UTR GABA-B-R3 + chr2L 750096 5` UTR GABA-B-R3 + chr2L 750168 5` UTR GABA-B-R3 + chr2L_5_750001 chr2L_750001 RAL-93 11 chr2L 770473 770480 chr2L 772254 772261 Bari1 6 1780 6.5 5.0 5.8 0.9 1788 chr2L 770473 intergenic not near genes chr2L 771367 intergenic not near genes chr2L 772261 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-93 12 chr2L 781064 781089 chr2L 781140 781178 6 83 5.0 0.0 2.5 1.7 114 chr2L 781064 5` UTR Gr21a + chr2L 781121 5` UTR Gr21a + chr2L 781178 5` UTR Gr21a + chr2L_6_780001 chr2L_780001 RAL-93 13 chr2L 848614 848641 chr2L 848698 848723 10 83 1.0 5.5 3.2 2.4 109 chr2L 848614 intron drongo - chr2L 848668 intron drongo - chr2L 848723 intron drongo - chr2L_10_845001 chr2L_845001 RAL-93 14 chr2L 950316 950338 chr2L 950401 950423 10 84 4.0 3.5 3.8 2.1 107 chr2L 950316 intron CG4341 + chr2L 950370 intron CG4341 + chr2L 950423 intron CG4341 + chr2L_10_950001 chr2L_950001 RAL-93 15 chr2L 976883 976903 chr2L 984519 984539 roo 4 7636 2.0 1.0 1.5 1.6 7656 chr2L 976883 intergenic not near genes chr2L 980711 intergenic not near genes chr2L 984539 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-93 16 chr2L 1089969 1089999 chr2L 1090165 1090180 9 191 1.0 0.5 0.8 5.0 211 chr2L 1089969 intron CG4629 - chr2L 1090074 intron CG4629 - chr2L 1090180 intron CG4629 - chr2L_9_1090001 chr2L_1090001 RAL-93 17 chr2L 1220127 1220162 chr2L 1227593 1227628 blood 12 7465 3.0 1.5 2.2 3.8 7501 chr2L 1220127 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227628 intron CG42329 + chr2L_12_1220001 chr2L_1220001 RAL-93 18 chr2L 1237985 1238004 chr2L 1238069 1238088 5 84 1.5 0.5 1.0 2.5 103 chr2L 1237985 intergenic not near genes chr2L 1238036 intergenic not near genes chr2L 1238088 intergenic not near genes chr2L_5_1235001 chr2L_1235001 RAL-93 19 chr2L 1244414 1244431 chr2L 1244489 1244508 7 77 5.0 1.0 3.0 1.8 94 chr2L 1244414 intergenic not near genes chr2L 1244461 intergenic not near genes chr2L 1244508 intergenic not near genes chr2L_7_1240001 chr2L_1240001 RAL-93 20 chr2L 1261242 1261261 chr2L 1261323 1261341 4 80 0.0 1.5 0.8 2.2 99 chr2L 1261242 intron robo3 + chr2L 1261292 intron robo3 + chr2L 1261341 intron robo3 + chr2L_4_1260001 chr2L_1260001 RAL-93 21 chr2L 1291779 1291810 chr2L 1296222 1296253 14 4444 7.0 24.0 15.5 0.8 4474 chr2L 1291779 intron robo3 + chr2L 1294016 3` UTR robo3 + chr2L 1296253 3` UTR robo3 + chr2L_14_1290001 chr2L_1290001 RAL-93 22 chr2L 1312869 1312894 chr2L 1312956 1312964 4 82 2.5 1.5 2.0 1.3 95 chr2L 1312869 intergenic not near genes chr2L 1312916 intergenic not near genes chr2L 1312964 intergenic not near genes chr2L_4_1310001 chr2L_1310001 RAL-93 23 chr2L 1506597 1506618 chr2L 1506726 1506747 8 129 4.0 3.5 3.8 1.7 150 chr2L 1506597 intergenic not near genes chr2L 1506672 intergenic not near genes chr2L 1506747 intergenic not near genes chr2L_8_1505001 chr2L_1505001 RAL-93 24 chr2L 1570686 1570707 chr2L 1573558 1573579 F-element 5 2872 4.0 2.0 3.0 1.2 2893 chr2L 1570686 intron haf + chr2L 1572132 intron haf + chr2L 1573579 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-93 25 chr2L 1591864 1591886 chr2L 1591948 1591950 7 79 2.5 2.0 2.2 2.2 86 chr2L 1591864 intron haf + chr2L 1591907 intron haf + chr2L 1591950 intron haf + chr2L_7_1590001 chr2L_1590001 RAL-93 26 chr2L 1662021 1662028 chr2L 1662106 1662112 4 84 3.0 0.0 1.5 1.6 91 chr2L 1662021 intron chinmo + chr2L 1662066 intron chinmo + chr2L 1662112 intron chinmo + chr2L_4_1660001 chr2L_1660001 RAL-93 27 chr2L 1678981 1679009 chr2L 1686446 1686474 blood 5 7465 1.0 4.5 2.8 1.3 7493 chr2L 1678981 intron chinmo + chr2L 1682728 intron chinmo + chr2L 1686474 intron chinmo + chr2L_5_1680001 chr2L_1680001 RAL-93 28 chr2L 1711349 1711368 chr2L 1711679 1711698 mdg3 9 329 4.5 3.5 4.0 1.8 349 chr2L 1711349 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711524 3` UTR frtz - chr2L 1711698 3` UTR frtz - chr2L_9_1710001 chr2L_1710001 RAL-93 29 chr2L 1756793 1756823 chr2L 1756925 1756947 16 130 5.0 2.5 3.8 3.3 154 chr2L 1756793 intergenic Gr22f - chr2L 1756870 intergenic Gr22f - chr2L 1756947 intergenic Gr22f - chr2L_16_1755001 chr2L_1755001 RAL-93 30 chr2L 1757329 1757350 chr2L 1757408 1757428 9 78 3.0 2.0 2.5 2.6 99 chr2L 1757329 intergenic not near genes chr2L 1757378 intergenic not near genes chr2L 1757428 intergenic not near genes chr2L_9_1755001 chr2L_1755001 RAL-93 31 chr2L 1795464 1795644 chr2L 1795551 1795740 5 93 0.5 0.5 0.5 3.3 276 chr2L 1795464 intergenic not near genes chr2L 1795602 intergenic not near genes chr2L 1795740 intergenic not near genes chr2L_5_1795001 chr2L_1795001 RAL-93 32 chr2L 1849327 1849357 chr2L 1849418 1849448 16 91 3.5 0.0 1.8 5.7 121 chr2L 1849327 intron wry + chr2L 1849388 intron wry + chr2L 1849448 intron wry + chr2L_16_1845001 chr2L_1845001 RAL-93 33 chr2L 1879513 1879540 chr2L 1879612 1879639 10 98 2.5 3.0 2.8 2.6 126 chr2L 1879513 intron CG31663 - chr2L 1879576 intron CG31663 - chr2L 1879639 intron CG31663 - chr2L_10_1875001 chr2L_1875001 RAL-93 34 chr2L 1883872 1883894 chr2L 1883948 1883972 6 77 2.5 5.0 3.8 1.2 100 chr2L 1883872 exon CG15358 - chr2L 1883922 exon CG15358 - chr2L 1883972 exon CG15358 - chr2L_6_1880001 chr2L_1880001 RAL-93 35 chr2L 1933662 1933671 chr2L 1933743 1933752 4 81 0.5 0.0 0.2 3.3 90 chr2L 1933662 intron CG7337 + chr2L 1933707 intron CG7337 + chr2L 1933752 intron CG7337 + chr2L_4_1930001 chr2L_1930001 RAL-93 36 chr2L 2051519 2051525 chr2L 2051595 2051601 4 76 1.0 6.0 3.5 0.9 82 chr2L 2051519 intergenic not near genes chr2L 2051560 intergenic not near genes chr2L 2051601 intergenic not near genes chr2L_4_2050001 chr2L_2050001 RAL-93 37 chr2L 2093027 2093053 chr2L 2093280 2093302 6 250 2.0 4.0 3.0 1.5 275 chr2L 2093027 intron dpr3 - chr2L 2093164 intron dpr3 - chr2L 2093302 intron dpr3 - chr2L_6_2090001 chr2L_2090001 RAL-93 38 chr2L 2100377 2100407 chr2L 2109527 2109543 roo 12 9146 2.0 3.0 2.5 3.4 9166 chr2L 2100377 intron dpr3 - chr2L 2104960 intron dpr3 - chr2L 2109543 intron dpr3 - chr2L_12_2100001 chr2L_2100001 RAL-93 39 chr2L 2112128 2112132 chr2L 2119776 2119793 opus 4 7656 6.5 4.0 5.2 0.6 7665 chr2L 2112128 intergenic not near genes chr2L 2115960 intergenic not near genes chr2L 2119793 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-93 40 chr2L 2207675 2207693 chr2L 2207756 2207774 7 80 4.5 5.0 4.8 1.2 99 chr2L 2207675 exon CG33124 - chr2L 2207724 exon CG33124 - chr2L 2207774 exon CG33124 - chr2L_7_2205001 chr2L_2205001 RAL-93 41 chr2L 2262311 2262337 chr2L 2262388 2262411 6 76 2.5 0.0 1.2 2.7 100 chr2L 2262311 intergenic not near genes chr2L 2262361 intergenic not near genes chr2L 2262411 intergenic not near genes chr2L_6_2260001 chr2L_2260001 RAL-93 42 chr2L 2293290 2293294 chr2L 2293376 2293383 4 89 3.0 5.0 4.0 0.8 93 chr2L 2293290 intergenic not near genes chr2L 2293336 intergenic not near genes chr2L 2293383 intergenic not near genes chr2L_4_2290001 chr2L_2290001 RAL-93 43 chr2L 2294057 2294075 chr2L 2299246 2299280 copia 6 5196 2.5 4.0 3.2 1.4 5223 chr2L 2294057 intergenic not near genes chr2L 2296668 intergenic not near genes chr2L 2299280 intergenic not near genes chr2L_6_2295001 chr2L_2295001 RAL-93 44 chr2L 2311076 2311089 chr2L 2311172 2311184 5 96 1.5 0.0 0.8 2.8 108 chr2L 2311076 intron CG9967 - chr2L 2311130 intron CG9967 - chr2L 2311184 intron CG9967 - chr2L_5_2310001 chr2L_2310001 RAL-93 45 chr2L 2321754 2321787 chr2L 2328168 2328201 19 6415 28.5 27.5 28.0 0.7 6447 chr2L 2321754 intron,intron CG9967 -,eys + chr2L 2324978 intron,intron CG9967 -,eys + chr2L 2328201 intron,intron CG9967 -,eys + chr2L_19_2320001 chr2L_2320001 RAL-93 46 chr2L 2541457 2541477 chr2L 2541540 2541558 8 83 4.0 2.5 3.2 1.9 101 chr2L 2541457 intergenic not near genes chr2L 2541508 intergenic not near genes chr2L 2541558 intergenic not near genes chr2L_8_2540001 chr2L_2540001 RAL-93 47 chr2L 2544539 2544559 chr2L 2544638 2544658 8 99 0.0 3.0 1.5 3.2 119 chr2L 2544539 intergenic not near genes chr2L 2544598 intergenic not near genes chr2L 2544658 intergenic not near genes chr2L_8_2540001 chr2L_2540001 RAL-93 48 chr2L 2552739 2552775 chr2L 2552819 2552855 9 80 0.5 3.0 1.8 3.2 116 chr2L 2552739 exon CG3515 - chr2L 2552797 5` UTR CG3515 - chr2L 2552855 intergenic CG3515 - chr2L_9_2550001 chr2L_2550001 RAL-93 49 chr2L 2637226 2637263 chr2L 2637324 2637359 11 98 4.0 2.0 3.0 2.8 133 chr2L 2637226 intergenic not near genes chr2L 2637292 intergenic not near genes chr2L 2637359 intergenic not near genes chr2L_11_2635001 chr2L_2635001 RAL-93 50 chr2L 2661197 2661224 chr2L 2663035 2663043 I-element 5 1830 5.0 2.5 3.8 1.0 1846 chr2L 2661197 intergenic not near genes chr2L 2662120 intergenic not near genes chr2L 2663043 intergenic not near genes chr2L_5_2660001 chr2L_2660001 RAL-93 51 chr2L 2667625 2667655 chr2L 2667704 2667731 8 76 6.0 1.5 3.8 1.7 106 chr2L 2667625 intergenic not near genes chr2L 2667678 intergenic not near genes chr2L 2667731 intergenic not near genes chr2L_8_2665001 chr2L_2665001 RAL-93 52 chr2L 2826404 2826410 chr2L 2826488 2826494 4 84 0.0 2.0 1.0 2.0 90 chr2L 2826404 intron Duox - chr2L 2826449 intron Duox - chr2L 2826494 intron Duox - chr2L_4_2825001 chr2L_2825001 RAL-93 53 chr2L 2933307 2933319 chr2L 2935493 2935505 pogo 5 2185 2.5 6.0 4.2 1.0 2198 chr2L 2933307 intron lilli + chr2L 2934406 intron lilli + chr2L 2935505 intron lilli + chr2L_5_2930001 chr2L_2930001 RAL-93 54 chr2L 2937418 2937450 chr2L 2937495 2937527 9 77 0.5 1.0 0.8 5.0 109 chr2L 2937418 intron lilli + chr2L 2937472 intron lilli + chr2L 2937527 intron lilli + chr2L_9_2935001 chr2L_2935001 RAL-93 55 chr2L 3001616 3001632 chr2L 3001683 3001706 8 76 5.5 4.5 5.0 1.3 90 chr2L 3001616 intron CG17265 + chr2L 3001661 intron CG17265 + chr2L 3001706 intron CG17265 + chr2L_8_3000001 chr2L_3000001 RAL-93 56 chr2L 3007731 3007760 chr2L 3008060 3008087 10 328 4.5 1.5 3.0 2.5 356 chr2L 3007731 intron CG17265 + chr2L 3007909 intron CG17265 + chr2L 3008087 intron CG17265 + chr2L_10_3005001 chr2L_3005001 RAL-93 57 chr2L 3073011 3073028 chr2L 3078234 3078251 copia 10 5223 0.5 2.0 1.2 4.5 5240 chr2L 3073011 intron toc - chr2L 3075631 intron toc - chr2L 3078251 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-93 58 chr2L 3108870 3108891 chr2L 3108947 3108968 5 76 1.0 4.0 2.5 1.4 98 chr2L 3108870 intron toc - chr2L 3108919 intron toc - chr2L 3108968 intron toc - chr2L_5_3105001 chr2L_3105001 RAL-93 59 chr2L 3171184 3171207 chr2L 3171488 3171511 6 301 4.5 0.0 2.2 1.9 327 chr2L 3171184 intergenic CG44002 - chr2L 3171348 intergenic CG44002 - chr2L 3171511 intergenic CG44002 - chr2L_6_3170001 chr2L_3170001 RAL-93 60 chr2L 3181295 3181305 chr2L 3181381 3181391 5 86 0.5 4.5 2.5 1.4 96 chr2L 3181295 intron CG34393 - chr2L 3181343 intron CG34393 - chr2L 3181391 intron CG34393 - chr2L_5_3180001 chr2L_3180001 RAL-93 61 chr2L 3192221 3192238 chr2L 3192329 3192347 6 109 3.0 5.5 4.2 1.2 126 chr2L 3192221 intron CG34393 - chr2L 3192284 intron CG34393 - chr2L 3192347 intron CG34393 - chr2L_6_3190001 chr2L_3190001 RAL-93 62 chr2L 3202741 3202772 chr2L 3210166 3210195 mdg1 6 7427 1.5 0.5 1.0 3.0 7454 chr2L 3202741 intergenic not near genes chr2L 3206468 intergenic not near genes chr2L 3210195 intergenic CR45336 + chr2L_6_3205001 chr2L_3205001 RAL-93 63 chr2L 3233641 3233654 chr2L 3233792 3233805 4 150 1.5 2.0 1.8 1.4 164 chr2L 3233641 intergenic not near genes chr2L 3233723 intergenic not near genes chr2L 3233805 intergenic not near genes chr2L_4_3230001 chr2L_3230001 RAL-93 64 chr2L 3271153 3271166 chr2L 3271273 3271288 7 122 7.0 5.0 6.0 1.0 135 chr2L 3271153 exon CG3347 + chr2L 3271220 exon CG3347 + chr2L 3271288 exon CG3347 + chr2L_7_3270001 chr2L_3270001 RAL-93 65 chr2L 3284377 3284402 chr2L 3284457 3284479 5 79 2.0 1.5 1.8 1.8 102 chr2L 3284377 intergenic not near genes chr2L 3284428 intergenic not near genes chr2L 3284479 intergenic not near genes chr2L_5_3280001 chr2L_3280001 RAL-93 66 chr2L 3291242 3291267 chr2L 3291322 3291346 9 79 3.5 6.0 4.8 1.6 104 chr2L 3291242 intergenic CG9664 - chr2L 3291294 3` UTR CG9664 - chr2L 3291346 3` UTR CG9664 - chr2L_9_3290001 chr2L_3290001 RAL-93 67 chr2L 3393529 3393814 chr2L 3393607 3393894 17 80 3.5 2.0 2.8 4.5 365 chr2L 3393529 intergenic not near genes chr2L 3393712 intergenic not near genes chr2L 3393894 intergenic not near genes chr2L_17_3390001 chr2L_3390001 RAL-93 68 chr2L 3498735 3498745 chr2L 3498812 3498818 4 76 0.5 2.5 1.5 1.6 83 chr2L 3498735 intron tim - chr2L 3498776 intron tim - chr2L 3498818 intron tim - chr2L_4_3495001 chr2L_3495001 RAL-93 69 chr2L 3508353 3508366 chr2L 3508431 3508444 6 78 0.0 3.5 1.8 2.1 91 chr2L 3508353 intergenic tim -,CR45299 + chr2L 3508398 intergenic CR45299 +,tim - chr2L 3508444 intergenic CR45299 +,tim - chr2L_6_3505001 chr2L_3505001 RAL-93 70 chr2L 3582898 3582909 chr2L 3582975 3582986 4 77 1.0 3.0 2.0 1.3 88 chr2L 3582898 intergenic not near genes chr2L 3582942 intergenic not near genes chr2L 3582986 intergenic not near genes chr2L_4_3580001 chr2L_3580001 RAL-93 71 chr2L 3649791 3649821 chr2L 3654994 3655024 copia 13 5202 1.5 2.5 2.0 4.3 5233 chr2L 3649791 intron for - chr2L 3652408 intron for - chr2L 3655024 intron for - chr2L_13_3650001 chr2L_3650001 RAL-93 72 chr2L 3663309 3663340 chr2L 3663383 3663419 10 76 2.5 2.5 2.5 2.9 110 chr2L 3663309 intron CG34340 + chr2L 3663364 intron CG34340 + chr2L 3663419 intron CG34340 + chr2L_10_3660001 chr2L_3660001 RAL-93 73 chr2L 3850391 3850415 chr2L 3850475 3850499 9 84 3.5 3.5 3.5 2.0 108 chr2L 3850391 intergenic not near genes chr2L 3850445 intergenic not near genes chr2L 3850499 intergenic not near genes chr2L_9_3850001 chr2L_3850001 RAL-93 74 chr2L 3935917 3935942 chr2L 3936005 3936030 7 88 5.0 3.5 4.2 1.3 113 chr2L 3935917 intron fred - chr2L 3935974 intron fred - chr2L 3936030 intron fred - chr2L_7_3935001 chr2L_3935001 RAL-93 75 chr2L 3967238 3967252 chr2L 3967326 3967339 7 87 3.0 2.5 2.8 1.8 101 chr2L 3967238 intron fred - chr2L 3967288 intron fred - chr2L 3967339 intron fred - chr2L_7_3965001 chr2L_3965001 RAL-93 76 chr2L 3992494 3992525 chr2L 3992663 3992694 9 168 2.0 1.5 1.8 3.2 200 chr2L 3992494 intergenic not near genes chr2L 3992594 intergenic not near genes chr2L 3992694 intergenic not near genes chr2L_9_3990001 chr2L_3990001 RAL-93 77 chr2L 4008272 4008297 chr2L 4008357 4008382 6 85 1.0 1.0 1.0 3.0 110 chr2L 4008272 intergenic CG43773 +,CG43774 + chr2L 4008327 intergenic CG43774 +,CG43773 + chr2L 4008382 intergenic CG43774 +,CG43773 + chr2L_6_4005001 chr2L_4005001 RAL-93 78 chr2L 4066041 4066061 chr2L 4068864 4068886 Juan 6 2824 3.0 4.5 3.8 1.2 2845 chr2L 4066041 intron ed + chr2L 4067464 intron ed + chr2L 4068886 intron ed + chr2L_6_4065001 chr2L_4065001 RAL-93 79 chr2L 4124281 4124364 chr2L 4124360 4124457 5 89 0.0 0.0 0.0 5.0 176 chr2L 4124281 intergenic Sr-CI + chr2L 4124369 intergenic Sr-CI + chr2L 4124457 intergenic Sr-CI + chr2L_5_4120001 chr2L_4120001 RAL-93 80 chr2L 4131059 4131079 chr2L 4131458 4131478 6 399 5.5 2.5 4.0 1.2 419 chr2L 4131059 intergenic not near genes chr2L 4131268 intergenic not near genes chr2L 4131478 intergenic not near genes chr2L_6_4130001 chr2L_4130001 RAL-93 81 chr2L 4138149 4138153 chr2L 4138213 4138216 5 68 1.5 2.0 1.8 1.8 67 chr2L 4138149 intergenic not near genes chr2L 4138182 intergenic not near genes chr2L 4138216 intergenic not near genes chr2L_5_4135001 chr2L_4135001 RAL-93 82 chr2L 4166384 4166411 chr2L 4166466 4166489 7 81 1.0 4.0 2.5 2.0 105 chr2L 4166384 intergenic Or24a - chr2L 4166436 intergenic Or24a - chr2L 4166489 intergenic Or24a - chr2L_7_4165001 chr2L_4165001 RAL-93 83 chr2L 4170938 4170954 chr2L 4171107 4171123 4 169 4.0 2.5 3.2 1.0 185 chr2L 4170938 intergenic not near genes chr2L 4171030 intergenic not near genes chr2L 4171123 intergenic not near genes chr2L_4_4170001 chr2L_4170001 RAL-93 84 chr2L 4242619 4242628 chr2L 4242697 4242703 5 78 3.0 1.5 2.2 1.6 84 chr2L 4242619 intergenic CR44058 + chr2L 4242661 intergenic CR44058 + chr2L 4242703 intergenic CR44058 + chr2L_5_4240001 chr2L_4240001 RAL-93 85 chr2L 4317882 4317912 chr2L 4317959 4317990 10 78 1.5 1.5 1.5 4.0 108 chr2L 4317882 intron tutl + chr2L 4317936 intron tutl + chr2L 4317990 intron tutl + chr2L_10_4315001 chr2L_4315001 RAL-93 86 chr2L 4351475 4351501 chr2L 4351551 4351576 16 74 3.0 4.5 3.8 3.3 101 chr2L 4351475 intergenic CR44700 + chr2L 4351526 intergenic CR44700 + chr2L 4351576 intergenic CR44700 + chr2L_16_4350001 chr2L_4350001 RAL-93 87 chr2L 4439010 4439026 chr2L 4439096 4439110 4 86 4.0 7.0 5.5 0.6 100 chr2L 4439010 intron CG15431 - chr2L 4439060 intron CG15431 - chr2L 4439110 5` UTR CG15431 - chr2L_4_4435001 chr2L_4435001 RAL-93 88 chr2L 4477133 4477147 chr2L 4477326 4477360 12 196 18.5 15.5 17.0 0.7 227 chr2L 4477133 intergenic ine -,dp - chr2L 4477246 intergenic dp -,ine - chr2L 4477360 intergenic dp -,ine - chr2L_12_4475001 chr2L_4475001 RAL-93 89 chr2L 4601704 4601737 chr2L 4609145 4609177 mdg1 12 7441 2.5 4.0 3.2 2.9 7473 chr2L 4601704 intron dp - chr2L 4605440 intron dp - chr2L 4609177 intron dp - chr2L_12_4605001 chr2L_4605001 RAL-93 90 chr2L 4672077 4672111 chr2L 4672154 4672188 12 77 0.0 5.0 2.5 3.4 111 chr2L 4672077 intergenic not near genes chr2L 4672132 intergenic not near genes chr2L 4672188 intergenic not near genes chr2L_12_4670001 chr2L_4670001 RAL-93 91 chr2L 4770112 4770137 chr2L 4770191 4770220 9 82 3.0 2.0 2.5 2.6 108 chr2L 4770112 intron CG15630 - chr2L 4770166 intron CG15630 - chr2L 4770220 intron CG15630 - chr2L_9_4770001 chr2L_4770001 RAL-93 92 chr2L 4841079 4841104 chr2L 4841153 4841173 11 72 0.5 5.0 2.8 2.9 94 chr2L 4841079 intron CG12194 + chr2L 4841126 intron CG12194 + chr2L 4841173 exon CG12194 + chr2L_11_4840001 chr2L_4840001 RAL-93 93 chr2L 4858456 4858473 chr2L 4858555 4858572 7 99 0.5 0.0 0.2 5.8 116 chr2L 4858456 intron pog + chr2L 4858514 intron pog + chr2L 4858572 intron pog + chr2L_7_4855001 chr2L_4855001 RAL-93 94 chr2L 4953520 4953539 chr2L 4953761 4953780 pogo 6 241 2.0 1.5 1.8 2.1 260 chr2L 4953520 intergenic Jon25Bii - chr2L 4953650 intergenic not near genes chr2L 4953780 intergenic Jon25Bi - chr2L_6_4950001 chr2L_4950001 RAL-93 95 chr2L 5224384 5224405 chr2L 5224462 5224484 4 79 4.0 2.0 3.0 1.0 100 chr2L 5224384 intron tkv - chr2L 5224434 intron tkv - chr2L 5224484 intron tkv - chr2L_4_5220001 chr2L_5220001 RAL-93 96 chr2L 5278158 5278193 chr2L 5278242 5278276 12 80 4.0 1.5 2.8 3.2 118 chr2L 5278158 exon Bsg25D - chr2L 5278217 5` UTR Bsg25D - chr2L 5278276 5` UTR Bsg25D - chr2L_12_5275001 chr2L_5275001 RAL-93 97 chr2L 5381841 5381861 chr2L 5381925 5381945 9 84 2.5 5.5 4.0 1.8 104 chr2L 5381841 intergenic not near genes chr2L 5381893 intergenic not near genes chr2L 5381945 intergenic not near genes chr2L_9_5380001 chr2L_5380001 RAL-93 98 chr2L 5455679 5455706 chr2L 5455758 5455785 10 77 4.0 2.0 3.0 2.5 106 chr2L 5455679 intergenic not near genes chr2L 5455732 intergenic not near genes chr2L 5455785 intergenic not near genes chr2L_10_5455001 chr2L_5455001 RAL-93 99 chr2L 5511324 5511357 chr2L 5511407 5511434 11 82 2.0 2.0 2.0 3.7 110 chr2L 5511324 intergenic not near genes chr2L 5511379 intergenic not near genes chr2L 5511434 intergenic not near genes chr2L_11_5510001 chr2L_5510001 RAL-93 100 chr2L 5582327 5582347 chr2L 5582416 5582437 5 90 3.5 2.5 3.0 1.2 110 chr2L 5582327 intergenic not near genes chr2L 5582382 intergenic not near genes chr2L 5582437 intergenic not near genes chr2L_5_5580001 chr2L_5580001 RAL-93 101 chr2L 5594323 5594354 chr2L 5594415 5594446 11 91 2.0 3.5 2.8 2.9 123 chr2L 5594323 intergenic not near genes chr2L 5594384 intergenic not near genes chr2L 5594446 intergenic not near genes chr2L_11_5590001 chr2L_5590001 RAL-93 102 chr2L 5774591 5774607 chr2L 5774804 5774821 4 213 3.0 1.5 2.2 1.2 230 chr2L 5774591 intron CG9171 - chr2L 5774706 intron CG9171 - chr2L 5774821 intron CG9171 - chr2L_4_5770001 chr2L_5770001 RAL-93 103 chr2L 5827714 5827740 chr2L 5836721 5836748 roo 10 9006 2.5 4.0 3.2 2.4 9034 chr2L 5827714 intron TrissinR + chr2L 5832231 intron TrissinR + chr2L 5836748 intron TrissinR + chr2L_10_5830001 chr2L_5830001 RAL-93 104 chr2L 5839102 5839120 chr2L 5839182 5839200 5 80 7.0 4.0 5.5 0.8 98 chr2L 5839102 intron TrissinR + chr2L 5839151 intron TrissinR + chr2L 5839200 intron TrissinR + chr2L_5_5835001 chr2L_5835001 RAL-93 105 chr2L 5989033 5989058 chr2L 5989109 5989134 7 74 2.0 1.0 1.5 2.8 101 chr2L 5989033 intergenic ifc +,lid - chr2L 5989084 intergenic ifc +,lid - chr2L 5989134 intergenic lid -,ifc + chr2L_7_5985001 chr2L_5985001 RAL-93 106 chr2L 6011356 6011384 chr2L 6011496 6011524 6 140 0.5 4.0 2.2 1.9 168 chr2L 6011356 intron CG9098 - chr2L 6011440 intron CG9098 - chr2L 6011524 intron CG9098 - chr2L_6_6010001 chr2L_6010001 RAL-93 107 chr2L 6070896 6070924 chr2L 6070985 6070994 10 86 0.0 2.5 1.2 4.5 98 chr2L 6070896 intergenic Kr-h2 +,CG9154 - chr2L 6070945 intergenic Kr-h2 +,CG9154 - chr2L 6070994 5` UTR Kr-h2 + chr2L_10_6070001 chr2L_6070001 RAL-93 108 chr2L 6074420 6074448 chr2L 6074554 6074564 4 123 8.5 3.0 5.8 0.6 144 chr2L 6074420 3` UTR CR43801 - chr2L 6074492 3` UTR CR43801 - chr2L 6074564 3` UTR CR43801 - chr2L_4_6070001 chr2L_6070001 RAL-93 109 chr2L 6093695 6093719 chr2L 6093775 6093799 8 79 5.0 2.5 3.8 1.7 104 chr2L 6093695 exon,3` UTR Kr-h1 +,CG45075 + chr2L 6093747 intron,intron Kr-h1 +,CG45075 + chr2L 6093799 exon,3` UTR Kr-h1 +,CG45075 + chr2L_8_6090001 chr2L_6090001 RAL-93 110 chr2L 6103224 6103252 chr2L 6103294 6103329 12 75 2.0 2.0 2.0 4.0 105 chr2L 6103224 intron stai + chr2L 6103276 intron stai + chr2L 6103329 intron stai + chr2L_12_6100001 chr2L_6100001 RAL-93 111 chr2L 6261967 6261994 chr2L 6262043 6262068 6 76 4.5 1.5 3.0 1.5 101 chr2L 6261967 intron Ddr + chr2L 6262018 intron Ddr + chr2L 6262068 intron Ddr + chr2L_6_6260001 chr2L_6260001 RAL-93 112 chr2L 6286395 6286419 chr2L 6286488 6286511 10 92 3.5 2.0 2.8 2.6 116 chr2L 6286395 intron Ddr + chr2L 6286453 intron Ddr + chr2L 6286511 intron Ddr + chr2L_10_6285001 chr2L_6285001 RAL-93 113 chr2L 6300558 6300594 chr2L 6300644 6300656 13 82 2.5 1.5 2.0 4.3 98 chr2L 6300558 intron Ddr + chr2L 6300607 intron Ddr + chr2L 6300656 intron Ddr + chr2L_13_6300001 chr2L_6300001 RAL-93 114 chr2L 6426861 6426888 chr2L 6445121 6445148 roo 13 18260 3.0 2.0 2.5 3.7 18287 chr2L 6426861 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_13_6435001 chr2L_6435001 RAL-93 115 chr2L 6564856 6564867 chr2L 6564949 6564960 4 93 0.5 2.5 1.5 1.6 104 chr2L 6564856 3` UTR CG13766 - chr2L 6564908 3` UTR CG13766 - chr2L 6564960 3` UTR CG13766 - chr2L_4_6560001 chr2L_6560001 RAL-93 116 chr2L 6589972 6590112 chr2L 6590114 6590168 7 136 0.0 0.0 0.0 7.0 196 chr2L 6589972 intron CG11319 - chr2L 6590070 intron CG11319 - chr2L 6590168 intron CG11319 - chr2L_7_6590001 chr2L_6590001 RAL-93 117 chr2L 6677653 6677687 chr2L 6677736 6677770 4 83 3.5 0.5 2.0 1.3 117 chr2L 6677653 intergenic CG11329 -,Nhe3 - chr2L 6677712 intergenic CG11329 -,Nhe3 - chr2L 6677770 intergenic Nhe3 -,CG11329 - chr2L_4_6675001 chr2L_6675001 RAL-93 118 chr2L 6694630 6694667 chr2L 6694706 6694742 14 75 2.5 2.0 2.2 4.4 112 chr2L 6694630 intron Tsp - chr2L 6694686 intron Tsp - chr2L 6694742 intron Tsp - chr2L_14_6690001 chr2L_6690001 RAL-93 119 chr2L 6702524 6702532 chr2L 6702606 6702615 6 84 2.0 3.5 2.8 1.6 91 chr2L 6702524 intron Tsp - chr2L 6702570 intron Tsp - chr2L 6702615 intron Tsp - chr2L_6_6700001 chr2L_6700001 RAL-93 120 chr2L 6850397 6850425 chr2L 6850503 6850531 4 106 0.5 3.0 1.8 1.4 134 chr2L 6850397 intergenic not near genes chr2L 6850464 intergenic not near genes chr2L 6850531 intergenic not near genes chr2L_4_6850001 chr2L_6850001 RAL-93 121 chr2L 6876776 6876799 chr2L 6882967 6882988 diver 4 6189 5.5 4.5 5.0 0.7 6212 chr2L 6876776 intron Nlg2 + chr2L 6879882 intron Nlg2 + chr2L 6882988 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-93 122 chr2L 6900737 6900766 chr2L 6900831 6900860 6 94 2.5 0.5 1.5 2.4 123 chr2L 6900737 intron Nlg2 + chr2L 6900798 intron Nlg2 + chr2L 6900860 intron Nlg2 + chr2L_6_6900001 chr2L_6900001 RAL-93 123 chr2L 7081709 7081724 chr2L 7081790 7081805 5 81 1.5 0.5 1.0 2.5 96 chr2L 7081709 intron Pvf2 - chr2L 7081757 intron Pvf2 - chr2L 7081805 intron Pvf2 - chr2L_5_7080001 chr2L_7080001 RAL-93 124 chr2L 7107572 7107593 chr2L 7107662 7107683 5 90 0.5 2.5 1.5 2.0 111 chr2L 7107572 intron Pvf3 - chr2L 7107628 intron Pvf3 - chr2L 7107683 intron Pvf3 - chr2L_5_7105001 chr2L_7105001 RAL-93 125 chr2L 7143164 7143184 chr2L 7143245 7143265 6 81 1.5 2.0 1.8 2.1 101 chr2L 7143164 intron,5` UTR Pvf3 -,CR44612 + chr2L 7143214 intron,5` UTR Pvf3 -,CR44612 + chr2L 7143265 intron,5` UTR Pvf3 -,CR44612 + chr2L_6_7140001 chr2L_7140001 RAL-93 126 chr2L 7295997 7296024 chr2L 7296135 7296164 6 139 1.5 3.5 2.5 1.7 167 chr2L 7295997 intergenic not near genes chr2L 7296080 intergenic not near genes chr2L 7296164 intergenic not near genes chr2L_6_7295001 chr2L_7295001 RAL-93 127 chr2L 7343325 7343352 chr2L 7350439 7350468 roo 5 7115 5.0 3.0 4.0 1.0 7143 chr2L 7343325 intron Wnt6 + chr2L 7346896 intron Wnt6 + chr2L 7350468 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-93 128 chr2L 7399306 7399334 chr2L 7399679 7399705 6 372 1.0 5.0 3.0 1.5 399 chr2L 7399306 intergenic not near genes chr2L 7399506 intergenic not near genes chr2L 7399705 intergenic not near genes chr2L_6_7395001 chr2L_7395001 RAL-93 129 chr2L 7449744 7449770 chr2L 7449821 7449847 6 77 2.5 1.0 1.8 2.1 103 chr2L 7449744 5` UTR santa-maria - chr2L 7449796 5` UTR santa-maria - chr2L 7449847 5` UTR santa-maria - chr2L_6_7445001 chr2L_7445001 RAL-93 130 chr2L 7513773 7513798 chr2L 7513850 7513875 11 77 2.0 1.5 1.8 3.9 102 chr2L 7513773 intron RapGAP1 - chr2L 7513824 intron RapGAP1 - chr2L 7513875 intron RapGAP1 - chr2L_11_7510001 chr2L_7510001 RAL-93 131 chr2L 7565837 7565853 chr2L 7566276 7566292 4 439 3.0 2.0 2.5 1.1 455 chr2L 7565837 intron RapGAP1 - chr2L 7566064 intron RapGAP1 - chr2L 7566292 intron RapGAP1 - chr2L_4_7565001 chr2L_7565001 RAL-93 132 chr2L 7567486 7567499 chr2L 7567563 7567569 4 75 4.0 0.5 2.2 1.2 83 chr2L 7567486 intron RapGAP1 - chr2L 7567528 intron RapGAP1 - chr2L 7567569 intron RapGAP1 - chr2L_4_7565001 chr2L_7565001 RAL-93 133 chr2L 7670299 7670329 chr2L 7670382 7670413 7 84 1.0 2.0 1.5 2.8 114 chr2L 7670299 intron,intron Slob -,Myo28B1 + chr2L 7670356 intron,intron Slob -,Myo28B1 + chr2L 7670413 intron,intron Slob -,Myo28B1 + chr2L_7_7670001 chr2L_7670001 RAL-93 134 chr2L 7702542 7702561 chr2L 7702634 7702644 4 90 0.0 3.0 1.5 1.6 102 chr2L 7702542 intergenic Tep3 + chr2L 7702593 intergenic Tep3 + chr2L 7702644 intergenic Tep3 + chr2L_4_7700001 chr2L_7700001 RAL-93 135 chr2L 7854254 7854281 chr2L 7854331 7854358 7 77 0.5 1.0 0.8 3.9 104 chr2L 7854254 intron CG14535 - chr2L 7854306 intron CG14535 - chr2L 7854358 intron CG14535 - chr2L_7_7850001 chr2L_7850001 RAL-93 136 chr2L 7977089 7977113 chr2L 7984065 7984089 297 7 6976 0.5 3.5 2.0 2.3 7000 chr2L 7977089 intron Snoo - chr2L 7980589 intron Snoo - chr2L 7984089 intron,5` UTR Snoo -,CG7231 + chr2L_7_7980001 chr2L_7980001 RAL-93 137 chr2L 8013617 8013627 chr2L 8018822 8018832 copia 4 5205 2.5 0.0 1.2 1.8 5215 chr2L 8013617 intron Tg + chr2L 8016224 intron Tg + chr2L 8018832 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-93 138 chr2L 8044108 8044125 chr2L 8044180 8044203 5 74 2.0 0.5 1.2 2.3 95 chr2L 8044108 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044203 intron CG7466 + chr2L_5_8040001 chr2L_8040001 RAL-93 139 chr2L 8286304 8286326 chr2L 8286391 8286408 9 86 1.0 6.5 3.8 1.9 104 chr2L 8286304 intron Btk29A - chr2L 8286356 intron Btk29A - chr2L 8286408 intron Btk29A - chr2L_9_8285001 chr2L_8285001 RAL-93 140 chr2L 8384899 8384926 chr2L 8384979 8385008 6 82 4.5 6.0 5.2 1.0 109 chr2L 8384899 intron CG13384 + chr2L 8384954 intron CG13384 + chr2L 8385008 5` UTR CG13384 + chr2L_6_8380001 chr2L_8380001 RAL-93 141 chr2L 8423769 8423781 chr2L 8424010 8424022 9 240 6.5 3.5 5.0 1.5 253 chr2L 8423769 intron Akap200 + chr2L 8423896 intron Akap200 + chr2L 8424022 intron Akap200 + chr2L_9_8420001 chr2L_8420001 RAL-93 142 chr2L 8443657 8443670 chr2L 8448412 8448441 9 4758 19.5 25.5 22.5 0.4 4784 chr2L 8443657 exon CG31897 + chr2L 8446049 3` UTR U26 - chr2L 8448441 exon U26 - chr2L_9_8445001 chr2L_8445001 RAL-93 143 chr2L 8723121 8723147 chr2L 8731498 8731522 Tirant 12 8376 3.5 3.0 3.2 2.9 8401 chr2L 8723121 intron raw - chr2L 8727322 intron raw - chr2L 8731522 intron raw - chr2L_12_8725001 chr2L_8725001 RAL-93 144 chr2L 8939667 8939699 chr2L 8939747 8939779 7 80 0.5 2.0 1.2 3.2 112 chr2L 8939667 3` UTR Tsp29Fb + chr2L 8939723 3` UTR Tsp29Fb + chr2L 8939779 intergenic CG9510 -,Tsp29Fb + chr2L_7_8935001 chr2L_8935001 RAL-93 145 chr2L 9000278 9000311 chr2L 9007788 9007815 roo 6 7508 3.5 0.5 2.0 2.0 7537 chr2L 9000278 intergenic Try29F + chr2L 9004046 intergenic not near genes chr2L 9007815 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-93 146 chr2L 9030465 9030480 chr2L 9030544 9030559 4 79 6.0 7.0 6.5 0.5 94 chr2L 9030465 intron,intron CG9582 -,CR44352 - chr2L 9030512 intron,intron CG9582 -,CR44352 - chr2L 9030559 intron,intron CG9582 -,CR44352 - chr2L_4_9030001 chr2L_9030001 RAL-93 147 chr2L 9068173 9068204 chr2L 9068250 9068281 4 75 2.0 0.5 1.2 1.8 108 chr2L 9068173 intron CG31708 - chr2L 9068227 intron CG31708 - chr2L 9068281 intron CG31708 - chr2L_4_9065001 chr2L_9065001 RAL-93 148 chr2L 9073268 9073298 chr2L 9073354 9073384 7 85 0.0 5.5 2.8 1.8 116 chr2L 9073268 intergenic not near genes chr2L 9073326 intergenic not near genes chr2L 9073384 intergenic not near genes chr2L_7_9070001 chr2L_9070001 RAL-93 149 chr2L 9084338 9084340 chr2L 16217660 16217660 4 7133321 17.5 18.0 17.8 0.2 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-93 150 chr2L 9095573 9095603 chr2L 9095660 9095690 4 87 1.5 4.5 3.0 1.0 117 chr2L 9095573 intergenic not near genes chr2L 9095632 intergenic not near genes chr2L 9095690 intergenic not near genes chr2L_4_9095001 chr2L_9095001 RAL-93 151 chr2L 9156555 9156574 chr2L 9156633 9156652 6 75 2.0 6.0 4.0 1.2 97 chr2L 9156555 exon CG32982 + chr2L 9156604 intron CG32982 + chr2L 9156652 intron CG32982 + chr2L_6_9155001 chr2L_9155001 RAL-93 152 chr2L 9259221 9259246 chr2L 9259308 9259316 10 88 2.5 1.5 2.0 3.3 95 chr2L 9259221 intron Ggamma30A + chr2L 9259268 intron Ggamma30A + chr2L 9259316 intron Ggamma30A + chr2L_10_9255001 chr2L_9255001 RAL-93 153 chr2L 9297387 9297393 chr2L 9297464 9297468 7 77 2.0 4.0 3.0 1.8 81 chr2L 9297387 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297468 3` UTR Ggamma30A + chr2L_7_9295001 chr2L_9295001 RAL-93 154 chr2L 9393500 9393528 chr2L 9396463 9396495 jockey 6 2963 3.5 3.0 3.2 1.4 2995 chr2L 9393500 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396495 intron Shawl - chr2L_6_9390001 chr2L_9390001 RAL-93 155 chr2L 9456927 9456958 chr2L 9457011 9457019 5 79 0.0 0.0 0.0 5.0 92 chr2L 9456927 intron numb + chr2L 9456973 intron numb + chr2L 9457019 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-93 156 chr2L 9485543 9485569 chr2L 9485629 9485655 11 86 1.5 2.5 2.0 3.7 112 chr2L 9485543 intergenic not near genes chr2L 9485599 intergenic not near genes chr2L 9485655 intergenic not near genes chr2L_11_9485001 chr2L_9485001 RAL-93 157 chr2L 9662142 9662151 chr2L 9662246 9662246 4 102 0.5 1.0 0.8 2.2 104 chr2L 9662142 intergenic not near genes chr2L 9662194 intergenic not near genes chr2L 9662246 intergenic not near genes chr2L_4_9660001 chr2L_9660001 RAL-93 158 chr2L 9705214 9705239 chr2L 9705291 9705315 9 76 2.0 0.5 1.2 4.1 101 chr2L 9705214 intron,intron pelo +,CG31710 - chr2L 9705264 intron,intron pelo +,CG31710 - chr2L 9705315 intron,intron pelo +,CG31710 - chr2L_9_9705001 chr2L_9705001 RAL-93 159 chr2L 9756766 9756788 chr2L 9756872 9756894 4 108 4.0 3.5 3.8 0.8 128 chr2L 9756766 intergenic not near genes chr2L 9756830 intergenic not near genes chr2L 9756894 intergenic not near genes chr2L_4_9755001 chr2L_9755001 RAL-93 160 chr2L 9770769 9770786 chr2L 9770871 9770889 1360 5 101 2.0 3.5 2.8 1.3 120 chr2L 9770769 intron ppk18 - chr2L 9770829 intron ppk18 - chr2L 9770889 exon ppk18 - chr2L_5_9770001 chr2L_9770001 RAL-93 161 chr2L 9892505 9892517 chr2L 9892581 9892593 4 76 5.0 5.0 5.0 0.7 88 chr2L 9892505 intron mtDNA-helicase - chr2L 9892549 intron mtDNA-helicase - chr2L 9892593 intron mtDNA-helicase - chr2L_4_9890001 chr2L_9890001 RAL-93 162 chr2L 9914946 9914959 chr2L 9915033 9915046 5 87 1.5 1.0 1.2 2.3 100 chr2L 9914946 3` UTR Srp54 + chr2L 9914996 3` UTR Srp54 + chr2L 9915046 intergenic Srp54 +,yip2 + chr2L_5_9910001 chr2L_9910001 RAL-93 163 chr2L 9918946 9918951 chr2L 9920394 9920412 4 1459 12.0 3.5 7.8 0.5 1466 chr2L 9918946 exon CG4598 + chr2L 9919679 exon CG4598 + chr2L 9920412 exon CG4594 + chr2L_4_9915001 chr2L_9915001 RAL-93 164 chr2L 9973724 9973759 chr2L 9980843 9980878 HMS-Beagle 19 7117 1.0 3.5 2.2 5.9 7154 chr2L 9973724 intergenic not near genes chr2L 9977301 intergenic not near genes chr2L 9980878 intergenic not near genes chr2L_19_9975001 chr2L_9975001 RAL-93 165 chr2L 10024297 10024332 chr2L 10024545 10024580 4 244 0.5 0.0 0.2 3.3 283 chr2L 10024297 intergenic not near genes chr2L 10024438 intergenic not near genes chr2L 10024580 intergenic not near genes chr2L_4_10020001 chr2L_10020001 RAL-93 166 chr2L 10131491 10131515 chr2L 10131569 10131593 9 78 3.5 2.0 2.8 2.4 102 chr2L 10131491 intron CG44153 - chr2L 10131542 intron CG44153 - chr2L 10131593 intron CG44153 - chr2L_9_10130001 chr2L_10130001 RAL-93 167 chr2L 10133057 10133079 chr2L 10133128 10133160 8 74 2.5 4.5 3.5 1.8 103 chr2L 10133057 intron CG44153 - chr2L 10133108 intron CG44153 - chr2L 10133160 intron CG44153 - chr2L_8_10130001 chr2L_10130001 RAL-93 168 chr2L 10135515 10135527 chr2L 10135629 10135641 4 114 1.0 2.0 1.5 1.6 126 chr2L 10135515 intron CG44153 - chr2L 10135578 intron CG44153 - chr2L 10135641 intron CG44153 - chr2L_4_10135001 chr2L_10135001 RAL-93 169 chr2L 10153202 10153233 chr2L 10153281 10153312 15 78 3.5 4.0 3.8 3.1 110 chr2L 10153202 intron,exon CG44153 -,CG4839 + chr2L 10153257 intron,intron CG44153 -,CG4839 + chr2L 10153312 intron,intron CG44153 -,CG4839 + chr2L_15_10150001 chr2L_10150001 RAL-93 170 chr2L 10156323 10156354 chr2L 10163793 10163824 blood 8 7470 3.0 4.0 3.5 1.8 7501 chr2L 10156323 intron,3` UTR CG44153 -,CG4839 + chr2L 10160074 intron CG44153 - chr2L 10163824 intron CG44153 - chr2L_8_10160001 chr2L_10160001 RAL-93 171 chr2L 10169891 10169910 chr2L 10169970 10169989 11 79 3.5 2.5 3.0 2.8 98 chr2L 10169891 intron CG44153 - chr2L 10169940 intron CG44153 - chr2L 10169989 intron CG44153 - chr2L_11_10165001 chr2L_10165001 RAL-93 172 chr2L 10276202 10276221 chr2L 10276280 10276298 6 78 1.0 0.5 0.8 3.3 96 chr2L 10276202 intron Utx - chr2L 10276250 intron Utx - chr2L 10276298 intron Utx - chr2L_6_10275001 chr2L_10275001 RAL-93 173 chr2L 10278016 10278037 chr2L 10278095 10278117 5 80 3.0 1.0 2.0 1.7 101 chr2L 10278016 intron Utx - chr2L 10278066 intron Utx - chr2L 10278117 intron Utx - chr2L_5_10275001 chr2L_10275001 RAL-93 174 chr2L 10314506 10314533 chr2L 10314615 10314642 4 109 1.0 0.5 0.8 2.2 136 chr2L 10314506 intergenic CG5384 -,CG4972 + chr2L 10314574 intergenic CG5384 -,CG4972 + chr2L 10314642 intergenic CG4972 +,CG5384 - chr2L_4_10310001 chr2L_10310001 RAL-93 175 chr2L 10574569 10574598 chr2L 10574666 10574695 11 96 3.0 0.5 1.8 3.9 126 chr2L 10574569 intron Trim9 + chr2L 10574632 intron Trim9 + chr2L 10574695 intron Trim9 + chr2L_11_10570001 chr2L_10570001 RAL-93 176 chr2L 10578511 10578533 chr2L 10578592 10578614 8 80 2.5 5.0 3.8 1.7 103 chr2L 10578511 intron Trim9 + chr2L 10578562 intron Trim9 + chr2L 10578614 intron Trim9 + chr2L_8_10575001 chr2L_10575001 RAL-93 177 chr2L 10580686 10580720 chr2L 10580761 10580794 10 72 3.5 1.5 2.5 2.9 108 chr2L 10580686 intron Trim9 + chr2L 10580740 intron Trim9 + chr2L 10580794 intron Trim9 + chr2L_10_10580001 chr2L_10580001 RAL-93 178 chr2L 10640649 10640672 chr2L 10640730 10640761 18 88 5.5 3.5 4.5 3.3 112 chr2L 10640649 exon CG31872 + chr2L 10640705 exon CG31872 + chr2L 10640761 exon CG31872 + chr2L_18_10640001 chr2L_10640001 RAL-93 179 chr2L 10705458 10705478 chr2L 10705541 10705561 4 82 1.5 4.0 2.8 1.1 103 chr2L 10705458 exon Lip2 - chr2L 10705510 intron Lip2 - chr2L 10705561 intron Lip2 - chr2L_4_10705001 chr2L_10705001 RAL-93 180 chr2L 10707673 10707689 chr2L 10707753 10707761 5 79 0.5 0.0 0.2 4.2 88 chr2L 10707673 intron Lip2 - chr2L 10707717 intron Lip2 - chr2L 10707761 intron Lip2 - chr2L_5_10705001 chr2L_10705001 RAL-93 181 chr2L 10727281 10727305 chr2L 10727392 10727416 7 111 3.0 0.0 1.5 2.8 135 chr2L 10727281 intron CG6431 + chr2L 10727348 intron CG6431 + chr2L 10727416 intron CG6431 + chr2L_7_10725001 chr2L_10725001 RAL-93 182 chr2L 10803777 10803804 chr2L 10803862 10803888 4 84 0.5 0.5 0.5 2.7 111 chr2L 10803777 intergenic Nos - chr2L 10803832 intergenic Nos - chr2L 10803888 intergenic Nos - chr2L_4_10800001 chr2L_10800001 RAL-93 183 chr2L 10813683 10813707 chr2L 10813823 10813859 5 148 1.5 1.5 1.5 2.0 176 chr2L 10813683 intron Nos - chr2L 10813771 intron Nos - chr2L 10813859 intron Nos - chr2L_5_10810001 chr2L_10810001 RAL-93 184 chr2L 10862848 10862871 chr2L 10864462 10864472 Rt1c 10 1611 5.0 7.0 6.0 1.4 1624 chr2L 10862848 3` UTR CR43807 - chr2L 10863660 intron CR43807 - chr2L 10864472 3` UTR CR43807 - chr2L_10_10860001 chr2L_10860001 RAL-93 185 chr2L 10946950 10946967 chr2L 10956164 10956182 roo 8 9214 5.0 6.0 5.5 1.2 9232 chr2L 10946950 intron dpr2 - chr2L 10951566 intron dpr2 - chr2L 10956182 intron dpr2 - chr2L_8_10950001 chr2L_10950001 RAL-93 186 chr2L 10946972 10946977 chr2L 10956162 10956190 roo 4 9208 2.5 6.0 4.2 0.8 9218 chr2L 10946972 intron dpr2 - chr2L 10951581 intron dpr2 - chr2L 10956190 intron dpr2 - chr2L_4_10950001 chr2L_10950001 RAL-93 187 chr2L 11028438 11028468 chr2L 11028542 11028571 7 103 4.5 3.5 4.0 1.4 133 chr2L 11028438 intron Samuel - chr2L 11028504 intron Samuel - chr2L 11028571 intron Samuel - chr2L_7_11025001 chr2L_11025001 RAL-93 188 chr2L 11253338 11253363 chr2L 11253419 11253444 6 81 0.0 3.0 1.5 2.4 106 chr2L 11253338 intron ab + chr2L 11253391 intron ab + chr2L 11253444 intron ab + chr2L_6_11250001 chr2L_11250001 RAL-93 189 chr2L 11404782 11404812 chr2L 11404858 11404887 9 76 0.0 3.0 1.5 3.6 105 chr2L 11404782 intergenic not near genes chr2L 11404834 intergenic not near genes chr2L 11404887 intergenic not near genes chr2L_9_11400001 chr2L_11400001 RAL-93 190 chr2L 11414972 11414991 chr2L 11415052 11415074 7 80 1.5 3.0 2.2 2.2 102 chr2L 11414972 intergenic not near genes chr2L 11415023 intergenic not near genes chr2L 11415074 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-93 191 chr2L 11418668 11418688 chr2L 11418742 11418767 7 77 1.5 3.5 2.5 2.0 99 chr2L 11418668 intergenic not near genes chr2L 11418718 intergenic not near genes chr2L 11418767 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-93 192 chr2L 11485685 11485701 chr2L 11485761 11485777 5 76 2.0 0.0 1.0 2.5 92 chr2L 11485685 exon,5` UTR CG43355 +,sala + chr2L 11485731 3` UTR,5` UTR CG43355 +,sala + chr2L 11485777 intron,intron CG43355 +,sala + chr2L_5_11485001 chr2L_11485001 RAL-93 193 chr2L 11614052 11614085 chr2L 11615547 11615580 hopper2 10 1489 2.0 3.5 2.8 2.6 1528 chr2L 11614052 intron kek2 + chr2L 11614816 intron kek2 + chr2L 11615580 intron kek2 + chr2L_10_11610001 chr2L_11610001 RAL-93 194 chr2L 11698574 11698585 chr2L 11698667 11698677 4 93 2.5 2.0 2.2 1.2 103 chr2L 11698574 intergenic not near genes chr2L 11698626 intergenic not near genes chr2L 11698677 intergenic not near genes chr2L_4_11695001 chr2L_11695001 RAL-93 195 chr2L 11713505 11713535 chr2L 11720973 11720990 blood 7 7466 4.0 0.5 2.2 2.2 7485 chr2L 11713505 intergenic not near genes chr2L 11717248 intergenic not near genes chr2L 11720990 intergenic CR44143 + chr2L_7_11715001 chr2L_11715001 RAL-93 196 chr2L 11752866 11752893 chr2L 11753156 11753183 6 290 1.5 3.0 2.2 1.9 317 chr2L 11752866 intergenic CG42470 - chr2L 11753024 3` UTR CG42470 - chr2L 11753183 3` UTR CG42470 - chr2L_6_11750001 chr2L_11750001 RAL-93 197 chr2L 11870944 11870961 chr2L 11871022 11871039 4 78 0.0 1.5 0.8 2.2 95 chr2L 11870944 intron Pde1c - chr2L 11870992 intron Pde1c - chr2L 11871039 intron Pde1c - chr2L_4_11870001 chr2L_11870001 RAL-93 198 chr2L 12109227 12109239 chr2L 12109311 12109323 4 84 0.0 1.5 0.8 2.2 96 chr2L 12109227 intergenic Rab6 -,Phae1 + chr2L 12109275 intergenic Phae1 +,Rab6 - chr2L 12109323 intergenic Phae1 +,Rab6 - chr2L_4_12105001 chr2L_12105001 RAL-93 199 chr2L 12116865 12116895 chr2L 12116950 12116980 8 85 0.5 1.5 1.0 4.0 115 chr2L 12116865 intron CG17211 + chr2L 12116922 intron CG17211 + chr2L 12116980 intron CG17211 + chr2L_8_12115001 chr2L_12115001 RAL-93 200 chr2L 12123985 12124016 chr2L 12124129 12124159 13 143 2.0 1.0 1.5 5.2 174 chr2L 12123985 intron CG17211 + chr2L 12124072 intron CG17211 + chr2L 12124159 intron CG17211 + chr2L_13_12120001 chr2L_12120001 RAL-93 201 chr2L 12179764 12179792 chr2L 12179850 12179878 4 86 1.0 0.5 0.8 2.2 114 chr2L 12179764 intron aret + chr2L 12179821 intron aret + chr2L 12179878 intron aret + chr2L_4_12175001 chr2L_12175001 RAL-93 202 chr2L 12229589 12229608 chr2L 12229664 12229685 4 76 2.0 0.0 1.0 2.0 96 chr2L 12229589 intron aret + chr2L 12229637 intron aret + chr2L 12229685 intron aret + chr2L_4_12225001 chr2L_12225001 RAL-93 203 chr2L 12239062 12239085 chr2L 12239149 12239173 4 87 1.0 4.0 2.5 1.1 111 chr2L 12239062 intron aret + chr2L 12239118 intron aret + chr2L 12239173 intron aret + chr2L_4_12235001 chr2L_12235001 RAL-93 204 chr2L 12264636 12264656 chr2L 12264727 12264747 5 91 0.0 4.5 2.2 1.6 111 chr2L 12264636 intron aret + chr2L 12264692 intron aret + chr2L 12264747 intron aret + chr2L_5_12260001 chr2L_12260001 RAL-93 205 chr2L 12384932 12384953 chr2L 12385017 12385038 5 85 2.0 2.0 2.0 1.7 106 chr2L 12384932 intron bru-2 + chr2L 12384985 intron bru-2 + chr2L 12385038 intron bru-2 + chr2L_5_12380001 chr2L_12380001 RAL-93 206 chr2L 12487891 12487919 chr2L 12487972 12488000 13 80 5.0 4.5 4.8 2.2 109 chr2L 12487891 intron bun - chr2L 12487946 intron bun - chr2L 12488000 intron bun - chr2L_13_12485001 chr2L_12485001 RAL-93 207 chr2L 12491421 12491511 chr2L 12491509 12491603 6 92 0.0 0.0 0.0 6.0 182 chr2L 12491421 intron bun - chr2L 12491512 intron bun - chr2L 12491603 intron bun - chr2L_6_12490001 chr2L_12490001 RAL-93 208 chr2L 12558318 12558351 chr2L 12565447 12565480 HMS-Beagle 7 7129 3.0 1.5 2.2 2.2 7162 chr2L 12558318 intergenic not near genes chr2L 12561899 intergenic not near genes chr2L 12565480 intergenic not near genes chr2L_7_12560001 chr2L_12560001 RAL-93 209 chr2L 12653033 12653065 chr2L 12653110 12653142 11 75 2.0 4.5 3.2 2.6 109 chr2L 12653033 intergenic not near genes chr2L 12653088 intergenic not near genes chr2L 12653142 intergenic not near genes chr2L_11_12650001 chr2L_12650001 RAL-93 210 chr2L 12728920 12728947 chr2L 12729161 12729187 pogo 10 241 2.5 3.0 2.8 2.6 267 chr2L 12728920 intron MRP + chr2L 12729054 intron MRP + chr2L 12729187 exon MRP + chr2L_10_12725001 chr2L_12725001 RAL-93 211 chr2L 12739180 12739197 chr2L 12743957 12743978 Doc 4 4777 2.5 4.0 3.2 1.0 4798 chr2L 12739180 exon MRP + chr2L 12741579 intron MRP + chr2L 12743978 intron MRP + chr2L_4_12740001 chr2L_12740001 RAL-93 212 chr2L 12747080 12747099 chr2L 12747170 12747189 7 90 2.5 0.0 1.2 3.2 109 chr2L 12747080 intergenic not near genes chr2L 12747134 intergenic not near genes chr2L 12747189 intergenic not near genes chr2L_7_12745001 chr2L_12745001 RAL-93 213 chr2L 12781798 12781811 chr2L 12789248 12789250 Quasimodo 4 7445 7.0 2.5 4.8 0.7 7452 chr2L 12781798 intergenic not near genes chr2L 12785524 intergenic not near genes chr2L 12789250 intergenic not near genes chr2L_4_12785001 chr2L_12785001 RAL-93 214 chr2L 12861693 12861728 chr2L 12863160 12863195 hobo 15 1465 3.0 4.5 3.8 3.1 1502 chr2L 12861693 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863195 intergenic not near genes chr2L_15_12860001 chr2L_12860001 RAL-93 215 chr2L 12933848 12933882 chr2L 12941315 12941345 blood 9 7465 4.0 0.0 2.0 3.0 7497 chr2L 12933848 intergenic not near genes chr2L 12937596 intergenic not near genes chr2L 12941345 intergenic not near genes chr2L_9_12935001 chr2L_12935001 RAL-93 216 chr2L 13042380 13042383 chr2L 13042469 13042473 4 90 4.5 8.0 6.2 0.6 93 chr2L 13042380 intron CG9932 - chr2L 13042426 intron CG9932 - chr2L 13042473 intron CG9932 - chr2L_4_13040001 chr2L_13040001 RAL-93 217 chr2L 13042385 13042400 chr2L 13042460 13042490 8 88 2.0 7.0 4.5 1.5 105 chr2L 13042385 intron CG9932 - chr2L 13042438 intron CG9932 - chr2L 13042490 intron CG9932 - chr2L_8_13040001 chr2L_13040001 RAL-93 218 chr2L 13063383 13063416 chr2L 13063460 13063489 9 75 1.5 3.5 2.5 2.6 106 chr2L 13063383 intergenic not near genes chr2L 13063436 intergenic not near genes chr2L 13063489 intergenic not near genes chr2L_9_13060001 chr2L_13060001 RAL-93 219 chr2L 13110208 13110237 chr2L 13110366 13110395 8 158 1.5 3.0 2.2 2.5 187 chr2L 13110208 intergenic not near genes chr2L 13110302 intergenic not near genes chr2L 13110395 intergenic not near genes chr2L_8_13110001 chr2L_13110001 RAL-93 220 chr2L 13147748 13147768 chr2L 13147824 13147844 7 75 5.5 1.5 3.5 1.6 96 chr2L 13147748 intergenic not near genes chr2L 13147796 intergenic not near genes chr2L 13147844 intergenic not near genes chr2L_7_13145001 chr2L_13145001 RAL-93 221 chr2L 13241958 13241963 chr2L 13244342 13244347 BS 4 2384 1.0 1.0 1.0 2.0 2389 chr2L 13241958 5` UTR CR45330 + chr2L 13243152 intron CR45330 + chr2L 13244347 5` UTR CR45330 + chr2L_4_13240001 chr2L_13240001 RAL-93 222 chr2L 13255287 13255300 chr2L 13255430 13255443 4 143 0.0 1.5 0.8 2.2 156 chr2L 13255287 intron CG31728 + chr2L 13255365 intron CG31728 + chr2L 13255443 exon CG31728 + chr2L_4_13255001 chr2L_13255001 RAL-93 223 chr2L 13405647 13405676 chr2L 13410443 13410473 Doc 13 4797 2.5 1.5 2.0 4.3 4826 chr2L 13405647 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410473 intron CG7110 + chr2L_13_13405001 chr2L_13405001 RAL-93 224 chr2L 13422486 13422504 chr2L 13422565 13422583 5 79 0.0 2.5 1.2 2.3 97 chr2L 13422486 intron CG42784 + chr2L 13422534 intron CG42784 + chr2L 13422583 intron CG42784 + chr2L_5_13420001 chr2L_13420001 RAL-93 225 chr2L 13430517 13430533 chr2L 13431946 13431962 5 1429 1.5 5.0 3.2 1.2 1445 chr2L 13430517 intron CG42784 + chr2L 13431240 intron CG42784 + chr2L 13431962 intron CG42784 + chr2L_5_13430001 chr2L_13430001 RAL-93 226 chr2L 13432990 13433015 chr2L 13433090 13433114 10 100 3.0 3.0 3.0 2.5 124 chr2L 13432990 intron CG42784 + chr2L 13433052 intron CG42784 + chr2L 13433114 intron CG42784 + chr2L_10_13430001 chr2L_13430001 RAL-93 227 chr2L 13449461 13449496 chr2L 13456897 13456932 Quasimodo 8 7436 2.0 3.5 2.8 2.1 7471 chr2L 13449461 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453196 intron CG42784 + chr2L 13456932 intron CG42784 + chr2L_8_13450001 chr2L_13450001 RAL-93 228 chr2L 13481448 13481471 chr2L 13482055 13482078 jockey 10 607 3.0 2.5 2.8 2.6 630 chr2L 13481448 intron CG42784 + chr2L 13481763 intron CG42784 + chr2L 13482078 intron CG42784 + chr2L_10_13480001 chr2L_13480001 RAL-93 229 chr2L 13622203 13622229 chr2L 13622307 13622328 4 100 1.0 2.5 1.8 1.4 125 chr2L 13622203 intron kuz + chr2L 13622266 intron kuz + chr2L 13622328 intron kuz + chr2L_4_13620001 chr2L_13620001 RAL-93 230 chr2L 13693013 13693038 chr2L 13693089 13693099 10 73 1.0 4.5 2.8 2.6 86 chr2L 13693013 intron CG31814 - chr2L 13693056 intron CG31814 - chr2L 13693099 intron CG31814 - chr2L_10_13690001 chr2L_13690001 RAL-93 231 chr2L 13693158 13693178 chr2L 13693551 13693572 8 393 3.5 4.0 3.8 1.7 414 chr2L 13693158 intron CG31814 - chr2L 13693365 intron CG31814 - chr2L 13693572 intron CG31814 - chr2L_8_13690001 chr2L_13690001 RAL-93 232 chr2L 13754703 13754729 chr2L 13755248 13755275 8 544 1.0 5.5 3.2 1.9 572 chr2L 13754703 intron,intron CR44846 +,TM9SF4 + chr2L 13754989 intron,intron CR44846 +,TM9SF4 + chr2L 13755275 intron,intron CR44846 +,TM9SF4 + chr2L_8_13750001 chr2L_13750001 RAL-93 233 chr2L 13761285 13761317 chr2L 13761368 13761377 6 76 1.5 1.5 1.5 2.4 92 chr2L 13761285 intron TM9SF4 + chr2L 13761331 intron TM9SF4 + chr2L 13761377 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 RAL-93 234 chr2L 13761806 13761833 chr2L 13762908 13762943 Doc 6 1105 4.0 3.5 3.8 1.2 1137 chr2L 13761806 intron TM9SF4 + chr2L 13762374 intron TM9SF4 + chr2L 13762943 intron TM9SF4 + chr2L_6_13760001 chr2L_13760001 RAL-93 235 chr2L 13767463 13767468 chr2L 13767522 13767548 4 71 5.0 4.5 4.8 0.7 85 chr2L 13767463 intron TM9SF4 + chr2L 13767506 intron TM9SF4 + chr2L 13767548 intron TM9SF4 + chr2L_4_13765001 chr2L_13765001 RAL-93 236 chr2L 13853089 13853117 chr2L 13862239 13862267 roo 7 9148 1.5 1.5 1.5 2.8 9178 chr2L 13853089 intron CenG1A + chr2L 13857678 intron CenG1A + chr2L 13862267 intron CenG1A + chr2L_7_13855001 chr2L_13855001 RAL-93 237 chr2L 13988287 13988298 chr2L 13988374 13988378 5 85 0.5 1.5 1.0 2.5 91 chr2L 13988287 intron rk - chr2L 13988332 intron rk - chr2L 13988378 intron rk - chr2L_5_13985001 chr2L_13985001 RAL-93 238 chr2L 14180072 14180092 chr2L 14180148 14180168 7 76 1.0 3.5 2.2 2.2 96 chr2L 14180072 intron CG43333 - chr2L 14180120 intron CG43333 - chr2L 14180168 intron CG43333 - chr2L_7_14180001 chr2L_14180001 RAL-93 239 chr2L 14255922 14255945 chr2L 14255998 14256021 9 75 3.0 1.5 2.2 2.8 99 chr2L 14255922 intergenic not near genes chr2L 14255972 intergenic not near genes chr2L 14256021 intergenic not near genes chr2L_9_14255001 chr2L_14255001 RAL-93 240 chr2L 14423949 14423973 chr2L 14424918 14424942 6 969 19.0 23.0 21.0 0.3 993 chr2L 14423949 intergenic Cpr35B - chr2L 14424446 exon Cpr35B - chr2L 14424942 exon Cpr35B - chr2L_6_14420001 chr2L_14420001 RAL-93 241 chr2L 14427805 14427836 chr2L 14428012 14428030 10 202 4.0 3.5 3.8 2.1 225 chr2L 14427805 intergenic not near genes chr2L 14427918 intergenic not near genes chr2L 14428030 intergenic not near genes chr2L_10_14425001 chr2L_14425001 RAL-93 242 chr2L 14588393 14588420 chr2L 14588547 14588574 9 154 1.5 2.0 1.8 3.2 181 chr2L 14588393 intergenic CG42680 - chr2L 14588484 intergenic CG42680 - chr2L 14588574 intergenic CG42680 - chr2L_9_14585001 chr2L_14585001 RAL-93 243 chr2L 14601980 14601999 chr2L 14602062 14602083 8 83 4.5 4.5 4.5 1.5 103 chr2L 14601980 exon osp - chr2L 14602032 intron osp - chr2L 14602083 intron osp - chr2L_8_14600001 chr2L_14600001 RAL-93 244 chr2L 14617889 14617916 chr2L 14617968 14617996 5 80 0.0 1.5 0.8 2.8 107 chr2L 14617889 intron,intron,intron osp -,Adh +,Adhr + chr2L 14617942 intron,intron,intron osp -,Adh +,Adhr + chr2L 14617996 intron,intron,intron osp -,Adh +,Adhr + chr2L_5_14615001 chr2L_14615001 RAL-93 245 chr2L 14707219 14707240 chr2L 14707338 14707358 7 117 2.0 1.5 1.8 2.5 139 chr2L 14707219 intergenic not near genes chr2L 14707288 intergenic not near genes chr2L 14707358 intergenic not near genes chr2L_7_14705001 chr2L_14705001 RAL-93 246 chr2L 14778811 14778840 chr2L 14779094 14779127 5 285 2.0 7.0 4.5 0.9 316 chr2L 14778811 intergenic not near genes chr2L 14778969 intergenic not near genes chr2L 14779127 intergenic not near genes chr2L_5_14775001 chr2L_14775001 RAL-93 247 chr2L 14803880 14803911 chr2L 14809082 14809112 copia 7 5201 1.0 1.0 1.0 3.5 5232 chr2L 14803880 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809112 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-93 248 chr2L 15174430 15174442 chr2L 15174901 15174913 4 470 3.5 5.0 4.2 0.8 483 chr2L 15174430 intron CG4168 - chr2L 15174672 intron CG4168 - chr2L 15174913 intron CG4168 - chr2L_4_15170001 chr2L_15170001 RAL-93 249 chr2L 15181796 15181812 chr2L 15181917 15181935 5 122 3.0 3.0 3.0 1.2 139 chr2L 15181796 intron CG4168 - chr2L 15181866 intron CG4168 - chr2L 15181935 intron CG4168 - chr2L_5_15180001 chr2L_15180001 RAL-93 250 chr2L 15357788 15357809 chr2L 15357881 15357899 4 92 2.0 3.0 2.5 1.1 111 chr2L 15357788 intergenic not near genes chr2L 15357844 intergenic not near genes chr2L 15357899 intergenic not near genes chr2L_4_15355001 chr2L_15355001 RAL-93 251 chr2L 15365037 15365042 chr2L 15365200 15365204 4 163 1.5 4.0 2.8 1.1 167 chr2L 15365037 intergenic not near genes chr2L 15365120 intergenic not near genes chr2L 15365204 intergenic not near genes chr2L_4_15365001 chr2L_15365001 RAL-93 252 chr2L 15442280 15442301 chr2L 15442365 15442387 6 86 1.0 0.0 0.5 4.0 107 chr2L 15442280 5` UTR CR44862 + chr2L 15442334 intergenic CR44862 + chr2L 15442387 intergenic CR44862 + chr2L_6_15440001 chr2L_15440001 RAL-93 253 chr2L 15610668 15610692 chr2L 15613560 15613584 4 2892 13.5 6.0 9.8 0.4 2916 chr2L 15610668 3` UTR,5` UTR CG15255 -,CR44865 + chr2L 15612126 intergenic CG11864 -,CG15255 - chr2L 15613584 intergenic CG11864 -,CG15254 - chr2L_4_15610001 chr2L_15610001 RAL-93 254 chr2L 15732522 15732542 chr2L 15732616 15732637 6 94 0.5 0.0 0.2 5.0 115 chr2L 15732522 intron CycE - chr2L 15732580 intron CycE - chr2L 15732637 intron CycE - chr2L_6_15730001 chr2L_15730001 RAL-93 255 chr2L 15906181 15906212 chr2L 15906269 15906277 8 78 1.0 1.0 1.0 4.0 96 chr2L 15906181 intron beat-Ib - chr2L 15906229 intron beat-Ib - chr2L 15906277 intron beat-Ib - chr2L_8_15905001 chr2L_15905001 RAL-93 256 chr2L 15930907 15930939 chr2L 15930998 15931031 8 90 3.5 2.5 3.0 2.0 124 chr2L 15930907 intron beat-Ib - chr2L 15930969 intron beat-Ib - chr2L 15931031 intron beat-Ib - chr2L_8_15930001 chr2L_15930001 RAL-93 257 chr2L 15956032 15956044 chr2L 15957499 15957511 hobo 6 1466 5.0 1.5 3.2 1.4 1479 chr2L 15956032 intron beat-Ib - chr2L 15956772 intron beat-Ib - chr2L 15957511 intron beat-Ib - chr2L_6_15955001 chr2L_15955001 RAL-93 258 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 13 145889 12.0 18.0 15.0 0.8 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_16140001 chr2L_16140001 RAL-93 259 chr2L 16098930 16098947 chr2L 16099016 16099035 5 87 2.0 2.0 2.0 1.7 105 chr2L 16098930 intergenic not near genes chr2L 16098982 intergenic not near genes chr2L 16099035 intergenic not near genes chr2L_5_16095001 chr2L_16095001 RAL-93 260 chr2L 16210496 16210520 chr2L 16210575 16210593 4 77 0.5 1.0 0.8 2.2 97 chr2L 16210496 intergenic not near genes chr2L 16210544 intergenic not near genes chr2L 16210593 intergenic not near genes chr2L_4_16210001 chr2L_16210001 RAL-93 261 chr2L 9084339 9084340 chr2L 16217660 16217660 6 7133320 17.5 18.0 17.8 0.3 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-93 262 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 12 145889 12.0 18.0 15.0 0.8 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_16140001 chr2L_16140001 RAL-93 263 chr2L 16226181 16226212 chr2L 16226268 16226299 10 86 1.5 0.5 1.0 5.0 118 chr2L 16226181 intergenic not near genes chr2L 16226240 intergenic not near genes chr2L 16226299 intergenic not near genes chr2L_10_16225001 chr2L_16225001 RAL-93 264 chr2L 16243221 16243372 chr2L 16243298 16243446 9 78 0.5 0.5 0.5 6.0 225 chr2L 16243221 exon CG42818 + chr2L 16243334 exon CG42818 + chr2L 16243446 exon CG42818 + chr2L_9_16240001 chr2L_16240001 RAL-93 265 chr2L 16254896 16254919 chr2L 16255155 16255178 6 259 1.0 3.0 2.0 2.0 282 chr2L 16254896 intron PRL-1 - chr2L 16255037 intron PRL-1 - chr2L 16255178 intron PRL-1 - chr2L_6_16255001 chr2L_16255001 RAL-93 266 chr2L 16280255 16280273 chr2L 16281426 16281442 1360 7 1170 5.0 6.0 5.5 1.1 1187 chr2L 16280255 intron crp - chr2L 16280848 intron crp - chr2L 16281442 intron crp - chr2L_7_16280001 chr2L_16280001 RAL-93 267 chr2L 16384489 16384525 chr2L 16384578 16384614 12 87 2.5 3.0 2.8 3.2 125 chr2L 16384489 intergenic not near genes chr2L 16384552 intergenic not near genes chr2L 16384614 intergenic not near genes chr2L_12_16380001 chr2L_16380001 RAL-93 268 chr2L 16432504 16432520 chr2L 16432589 16432606 5 85 0.0 0.0 0.0 5.0 102 chr2L 16432504 intron CG5888 - chr2L 16432555 intron CG5888 - chr2L 16432606 intron CG5888 - chr2L_5_16430001 chr2L_16430001 RAL-93 269 chr2L 16450598 16450626 chr2L 16450775 16450809 4 182 1.0 1.0 1.0 2.0 211 chr2L 16450598 intergenic Idgf2 +,Idgf3 + chr2L 16450704 intergenic Idgf2 +,Idgf3 + chr2L 16450809 intergenic Idgf3 +,Idgf2 + chr2L_4_16450001 chr2L_16450001 RAL-93 270 chr2L 16592666 16592672 chr2L 16592826 16592855 5 166 4.0 4.0 4.0 1.0 189 chr2L 16592666 intron CG42389 + chr2L 16592760 intron CG42389 + chr2L 16592855 intron CG42389 + chr2L_5_16590001 chr2L_16590001 RAL-93 271 chr2L 16654447 16654473 chr2L 16654562 16654590 7 116 1.5 4.5 3.0 1.8 143 chr2L 16654447 intron CG42389 + chr2L 16654518 intron CG42389 + chr2L 16654590 intron CG42389 + chr2L_7_16650001 chr2L_16650001 RAL-93 272 chr2L 16693917 16693943 chr2L 16693998 16694019 8 80 1.5 1.5 1.5 3.2 102 chr2L 16693917 intron grp + chr2L 16693968 intron grp + chr2L 16694019 intron grp + chr2L_8_16690001 chr2L_16690001 RAL-93 273 chr2L 16697071 16697083 chr2L 16697264 16697276 4 192 0.0 1.0 0.5 2.7 205 chr2L 16697071 intron grp + chr2L 16697174 intron grp + chr2L 16697276 intron grp + chr2L_4_16695001 chr2L_16695001 RAL-93 274 chr2L 16867033 16867041 chr2L 16867128 16867136 4 95 3.0 2.0 2.5 1.1 103 chr2L 16867033 intergenic not near genes chr2L 16867084 intergenic not near genes chr2L 16867136 intergenic not near genes chr2L_4_16865001 chr2L_16865001 RAL-93 275 chr2L 16889853 16889873 chr2L 16889936 16889955 4 83 0.5 2.5 1.5 1.6 102 chr2L 16889853 intron tweek + chr2L 16889904 intron tweek + chr2L 16889955 intron,5` UTR tweek +,CG42556 + chr2L_4_16885001 chr2L_16885001 RAL-93 276 chr2L 16958102 16958116 chr2L 16962889 16962902 Doc 4 4787 2.5 1.5 2.0 1.3 4800 chr2L 16958102 intergenic not near genes chr2L 16960502 intergenic not near genes chr2L 16962902 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-93 277 chr2L 16987425 16987455 chr2L 16987503 16987535 4 80 0.5 1.0 0.8 2.2 110 chr2L 16987425 intron beat-IIIb + chr2L 16987480 intron beat-IIIb + chr2L 16987535 intron beat-IIIb + chr2L_4_16985001 chr2L_16985001 RAL-93 278 chr2L 17000126 17000154 chr2L 17000245 17000275 9 121 2.0 3.0 2.5 2.6 149 chr2L 17000126 intergenic not near genes chr2L 17000200 intergenic not near genes chr2L 17000275 intergenic not near genes chr2L_9_17000001 chr2L_17000001 RAL-93 279 chr2L 17167566 17167588 chr2L 17167806 17167829 pogo 4 240 2.0 2.5 2.2 1.2 263 chr2L 17167566 intron,intron CG34106 +,beat-IIIa + chr2L 17167698 intron,intron CG34106 +,beat-IIIa + chr2L 17167829 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-93 280 chr2L 17273196 17273214 chr2L 17277976 17277986 F-element 7 4780 2.5 2.5 2.5 2.0 4790 chr2L 17273196 intergenic not near genes chr2L 17275591 intergenic not near genes chr2L 17277986 intergenic not near genes chr2L_7_17275001 chr2L_17275001 RAL-93 281 chr2L 17289230 17289265 chr2L 17289309 17289344 7 75 3.0 1.0 2.0 2.3 114 chr2L 17289230 intergenic not near genes chr2L 17289287 intergenic not near genes chr2L 17289344 intergenic not near genes chr2L_7_17285001 chr2L_17285001 RAL-93 282 chr2L 17327912 17327928 chr2L 17327998 17328013 7 86 3.0 1.0 2.0 2.3 101 chr2L 17327912 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328013 intergenic not near genes chr2L_7_17325001 chr2L_17325001 RAL-93 283 chr2L 17328465 17328491 chr2L 17328565 17328591 5 100 0.0 3.0 1.5 2.0 126 chr2L 17328465 intergenic not near genes chr2L 17328528 intergenic not near genes chr2L 17328591 intergenic not near genes chr2L_5_17325001 chr2L_17325001 RAL-93 284 chr2L 17466961 17466989 chr2L 17467382 17467401 9 420 2.0 4.5 3.2 2.1 440 chr2L 17466961 intron BicD - chr2L 17467181 intron BicD - chr2L 17467401 intron BicD - chr2L_9_17465001 chr2L_17465001 RAL-93 285 chr2L 17565381 17565405 chr2L 17565472 17565496 4 91 1.0 0.0 0.5 2.7 115 chr2L 17565381 intergenic not near genes chr2L 17565438 intergenic not near genes chr2L 17565496 intergenic not near genes chr2L_4_17565001 chr2L_17565001 RAL-93 286 chr2L 17584094 17584121 chr2L 17584882 17584906 11 787 20.5 3.0 11.8 0.9 812 chr2L 17584094 5` UTR CR45111 + chr2L 17584500 intergenic CR45111 +,CR45112 - chr2L 17584906 3` UTR CR45112 - chr2L_11_17580001 chr2L_17580001 RAL-93 287 chr2L 17695850 17695883 chr2L 17696031 17696063 9 178 1.5 1.5 1.5 3.6 213 chr2L 17695850 intron CadN - chr2L 17695956 intron CadN - chr2L 17696063 intron CadN - chr2L_9_17695001 chr2L_17695001 RAL-93 288 chr2L 17703653 17703668 chr2L 17703740 17703759 4 88 4.5 1.5 3.0 1.0 106 chr2L 17703653 intron CadN - chr2L 17703706 intron CadN - chr2L 17703759 intron CadN - chr2L_4_17700001 chr2L_17700001 RAL-93 289 chr2L 17741961 17741978 chr2L 17742037 17742054 4 76 4.0 1.0 2.5 1.1 93 chr2L 17741961 intron CadN - chr2L 17742008 intron CadN - chr2L 17742054 intron CadN - chr2L_4_17740001 chr2L_17740001 RAL-93 290 chr2L 17748009 17748017 chr2L 17748084 17748094 6 76 2.5 6.5 4.5 1.1 85 chr2L 17748009 intron CadN - chr2L 17748052 intron CadN - chr2L 17748094 intron CadN - chr2L_6_17745001 chr2L_17745001 RAL-93 291 chr2L 17796030 17796044 chr2L 17796111 17796125 5 80 2.0 1.5 1.8 1.8 95 chr2L 17796030 intron CadN2 - chr2L 17796078 intron CadN2 - chr2L 17796125 intron CadN2 - chr2L_5_17795001 chr2L_17795001 RAL-93 292 chr2L 17834600 17834626 chr2L 17834690 17834716 6 86 1.5 3.5 2.5 1.7 116 chr2L 17834600 intron CadN2 - chr2L 17834658 intron CadN2 - chr2L 17834716 intron CadN2 - chr2L_6_17830001 chr2L_17830001 RAL-93 293 chr2L 17837153 17837173 chr2L 17837253 17837273 6 100 1.5 4.5 3.0 1.5 120 chr2L 17837153 intron CadN2 - chr2L 17837213 intron CadN2 - chr2L 17837273 intron CadN2 - chr2L_6_17835001 chr2L_17835001 RAL-93 294 chr2L 17867883 17867919 chr2L 17868025 17868054 11 141 0.5 4.0 2.2 3.4 171 chr2L 17867883 intron CadN2 - chr2L 17867968 intron CadN2 - chr2L 17868054 intron CadN2 - chr2L_11_17865001 chr2L_17865001 RAL-93 295 chr2L 17906762 17906779 chr2L 17906840 17906862 4 82 4.0 2.0 3.0 1.0 100 chr2L 17906762 intergenic not near genes chr2L 17906812 intergenic not near genes chr2L 17906862 intergenic not near genes chr2L_4_17905001 chr2L_17905001 RAL-93 296 chr2L 17911961 17911983 chr2L 17914137 17914160 pogo 7 2177 5.0 1.5 3.2 1.7 2199 chr2L 17911961 intergenic not near genes chr2L 17913060 intergenic not near genes chr2L 17914160 intergenic CG43271 - chr2L_7_17910001 chr2L_17910001 RAL-93 297 chr2L 18051876 18051902 chr2L 18061023 18061048 roo 6 9147 5.0 4.0 4.5 1.1 9172 chr2L 18051876 intron rdo + chr2L 18056462 intron rdo + chr2L 18061048 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-93 298 chr2L 18104720 18104743 chr2L 18109211 18109234 15 4491 6.5 6.5 6.5 2.0 4514 chr2L 18104720 intergenic not near genes chr2L 18106977 intergenic not near genes chr2L 18109234 intergenic not near genes chr2L_15_18105001 chr2L_18105001 RAL-93 299 chr2L 18111246 18111260 chr2L 18111335 18111348 6 90 0.5 3.0 1.8 2.1 102 chr2L 18111246 intergenic not near genes chr2L 18111297 intergenic not near genes chr2L 18111348 intergenic not near genes chr2L_6_18110001 chr2L_18110001 RAL-93 300 chr2L 18231553 18231578 chr2L 18231641 18231666 7 84 2.0 3.0 2.5 2.0 113 chr2L 18231553 intron CG42750 - chr2L 18231610 intron CG42750 - chr2L 18231666 intron CG42750 - chr2L_7_18230001 chr2L_18230001 RAL-93 301 chr2L 18298941 18298965 chr2L 18299018 18299033 10 74 1.5 1.0 1.2 4.5 92 chr2L 18298941 intergenic not near genes chr2L 18298987 intergenic not near genes chr2L 18299033 intergenic not near genes chr2L_10_18295001 chr2L_18295001 RAL-93 302 chr2L 18299123 18299137 chr2L 18299801 18299826 5 680 18.0 6.0 12.0 0.4 703 chr2L 18299123 intergenic not near genes chr2L 18299474 intergenic not near genes chr2L 18299826 intergenic not near genes chr2L_5_18295001 chr2L_18295001 RAL-93 303 chr2L 18321186 18321212 chr2L 18321283 18321309 6 96 3.0 2.0 2.5 1.7 123 chr2L 18321186 intron Fas3 + chr2L 18321248 intron Fas3 + chr2L 18321309 intron Fas3 + chr2L_6_18320001 chr2L_18320001 RAL-93 304 chr2L 18408033 18408049 chr2L 18412815 18412833 Doc 8 4783 3.5 2.5 3.0 2.0 4800 chr2L 18408033 intergenic not near genes chr2L 18410433 intergenic not near genes chr2L 18412833 intergenic not near genes chr2L_8_18410001 chr2L_18410001 RAL-93 305 chr2L 18816738 18816773 chr2L 18816869 18816905 20 130 3.0 4.0 3.5 4.4 167 chr2L 18816738 intergenic not near genes chr2L 18816822 intergenic not near genes chr2L 18816905 intergenic not near genes chr2L_20_18815001 chr2L_18815001 RAL-93 306 chr2L 18876864 18876875 chr2L 18876942 18876953 4 77 3.0 3.0 3.0 1.0 89 chr2L 18876864 intron tup - chr2L 18876908 intron tup - chr2L 18876953 intron tup - chr2L_4_18875001 chr2L_18875001 RAL-93 307 chr2L 18883857 18883883 chr2L 18883939 18883965 11 81 2.0 2.5 2.2 3.4 108 chr2L 18883857 intergenic not near genes chr2L 18883911 intergenic not near genes chr2L 18883965 intergenic not near genes chr2L_11_18880001 chr2L_18880001 RAL-93 308 chr2L 18904336 18904352 chr2L 18904427 18904441 4 90 4.5 2.5 3.5 0.9 105 chr2L 18904336 intergenic not near genes chr2L 18904388 intergenic not near genes chr2L 18904441 intergenic not near genes chr2L_4_18900001 chr2L_18900001 RAL-93 309 chr2L 18990309 18990341 chr2L 18990420 18990452 6 110 1.0 3.0 2.0 2.0 143 chr2L 18990309 intergenic CG15170 - chr2L 18990380 intergenic CG15170 - chr2L 18990452 intergenic CG15170 - chr2L_6_18990001 chr2L_18990001 RAL-93 310 chr2L 19024096 19024097 chr2L 21768291 21768294 5 2744195 11.0 14.5 12.8 0.4 2744198 chr2L 19024096 3` UTR CR43700 - chr2L 20396195 intron CG10947 - chr2L 21768294 intron CG31612 - chr2L_5_20395001 chr2L_20395001 RAL-93 311 chr2L 19147373 19147403 chr2L 19154408 19154437 297 8 7034 3.0 2.5 2.8 2.1 7064 chr2L 19147373 intron brat + chr2L 19150905 intron brat + chr2L 19154437 intron brat + chr2L_8_19150001 chr2L_19150001 RAL-93 312 chr2L 19191786 19191811 chr2L 19191894 19191920 6 108 1.0 3.0 2.0 2.0 134 chr2L 19191786 intron drl + chr2L 19191853 intron drl + chr2L 19191920 intron drl + chr2L_6_19190001 chr2L_19190001 RAL-93 313 chr2L 19345014 19345036 chr2L 19357221 19357245 blood 6 12207 4.5 2.0 3.2 1.4 12231 chr2L 19345014 intron dnt - chr2L 19351130 intron dnt - chr2L 19357245 intron dnt - chr2L_6_19350001 chr2L_19350001 RAL-93 314 chr2L 19357553 19357569 chr2L 19357644 19357659 5 91 1.5 7.5 4.5 0.9 106 chr2L 19357553 intron dnt - chr2L 19357606 intron dnt - chr2L 19357659 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-93 315 chr2L 19380509 19380524 chr2L 19380589 19380603 6 80 3.0 4.0 3.5 1.3 94 chr2L 19380509 intergenic CG17350 + chr2L 19380556 intergenic CG17350 + chr2L 19380603 intergenic CG17350 + chr2L_6_19380001 chr2L_19380001 RAL-93 316 chr2L 19487206 19487238 chr2L 19487293 19487325 10 86 1.5 1.5 1.5 4.0 119 chr2L 19487206 intergenic CG13083 + chr2L 19487266 intergenic CG13083 + chr2L 19487325 intergenic CG13083 + chr2L_10_19485001 chr2L_19485001 RAL-93 317 chr2L 19543127 19543155 chr2L 19543211 19543239 14 83 1.0 2.5 1.8 5.0 112 chr2L 19543127 intron ref(2)P + chr2L 19543183 intron ref(2)P + chr2L 19543239 intron ref(2)P + chr2L_14_19540001 chr2L_19540001 RAL-93 318 chr2L 19559407 19559417 chr2L 19559474 19559493 6 73 0.0 0.5 0.2 5.0 86 chr2L 19559407 exon Tep5 + chr2L 19559450 exon Tep5 + chr2L 19559493 exon Tep5 + chr2L_6_19555001 chr2L_19555001 RAL-93 319 chr2L 19560007 19560039 chr2L 19560260 19560291 9 251 1.0 2.5 1.8 3.2 284 chr2L 19560007 exon Tep5 + chr2L 19560149 exon Tep5 + chr2L 19560291 intron Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-93 320 chr2L 19560835 19560858 chr2L 19560915 19560938 6 80 1.5 0.0 0.8 3.3 103 chr2L 19560835 intron Tep5 + chr2L 19560886 exon Tep5 + chr2L 19560938 exon Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-93 321 chr2L 19620110 19620130 chr2L 19621099 19621119 jockey 4 987 3.5 1.5 2.5 1.1 1009 chr2L 19620110 intron Lar + chr2L 19620614 intron Lar + chr2L 19621119 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-93 322 chr2L 19652575 19652602 chr2L 19674009 19674033 opus 4 21432 1.0 1.0 1.0 2.0 21458 chr2L 19652575 intron Lar + chr2L 19663304 intron Lar + chr2L 19674033 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-93 323 chr2L 19690322 19690352 chr2L 19690400 19690416 5 67 0.5 2.5 1.5 2.0 94 chr2L 19690322 intron Lar + chr2L 19690369 intron Lar + chr2L 19690416 intron Lar + chr2L_5_19690001 chr2L_19690001 RAL-93 324 chr2L 19703540 19703554 chr2L 19712676 19712690 roo 4 9136 4.0 1.5 2.8 1.1 9150 chr2L 19703540 intron Lar + chr2L 19708115 intron Lar + chr2L 19712690 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-93 325 chr2L 19846254 19846277 chr2L 19846332 19846357 5 76 0.0 3.0 1.5 2.0 103 chr2L 19846254 intron sick + chr2L 19846306 intron sick + chr2L 19846357 intron sick + chr2L_5_19845001 chr2L_19845001 RAL-93 326 chr2L 19994649 19994685 chr2L 19994729 19994765 7 73 2.0 2.0 2.0 2.3 116 chr2L 19994649 intron CG43861 - chr2L 19994707 intron CG43861 - chr2L 19994765 intron CG43861 - chr2L_7_19990001 chr2L_19990001 RAL-93 327 chr2L 20022092 20022103 chr2L 20022205 20022216 6 113 0.5 0.5 0.5 4.0 124 chr2L 20022092 intergenic not near genes chr2L 20022154 intergenic not near genes chr2L 20022216 intergenic not near genes chr2L_6_20020001 chr2L_20020001 RAL-93 328 chr2L 20296519 20296540 chr2L 20296600 20296621 6 81 0.5 1.0 0.8 3.3 102 chr2L 20296519 intergenic CR43414 - chr2L 20296570 intergenic CR43414 - chr2L 20296621 intergenic CR43414 - chr2L_6_20295001 chr2L_20295001 RAL-93 329 chr2L 20302200 20302218 chr2L 20302274 20302296 4 78 3.0 1.0 2.0 1.3 96 chr2L 20302200 intergenic not near genes chr2L 20302248 intergenic not near genes chr2L 20302296 intergenic not near genes chr2L_4_20300001 chr2L_20300001 RAL-93 330 chr2L 20303165 20303183 chr2L 20310633 20310651 blood 5 7468 1.5 0.5 1.0 2.5 7486 chr2L 20303165 intergenic not near genes chr2L 20306908 intergenic not near genes chr2L 20310651 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-93 331 chr2L 20369531 20369545 chr2L 20369614 20369629 4 84 1.0 3.5 2.2 1.2 98 chr2L 20369531 intergenic not near genes chr2L 20369580 intergenic not near genes chr2L 20369629 intergenic not near genes chr2L_4_20365001 chr2L_20365001 RAL-93 332 chr2L 20393783 20393808 chr2L 20393948 20393971 5 163 2.0 3.0 2.5 1.4 188 chr2L 20393783 intron CG10947 - chr2L 20393877 intron CG10947 - chr2L 20393971 intron CG10947 - chr2L_5_20390001 chr2L_20390001 RAL-93 333 chr2L 20431124 20431152 chr2L 20431317 20431345 9 193 1.5 2.5 2.0 3.0 221 chr2L 20431124 intron CG31688 + chr2L 20431234 intron CG31688 + chr2L 20431345 intron CG31688 + chr2L_9_20430001 chr2L_20430001 RAL-93 334 chr2L 20498693 20498708 chr2L 20498792 20498807 4 99 1.5 7.0 4.2 0.8 114 chr2L 20498693 intergenic not near genes chr2L 20498750 intergenic not near genes chr2L 20498807 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-93 335 chr2L 20568672 20568686 chr2L 20569058 20569074 X-element 4 388 2.5 3.5 3.0 1.0 402 chr2L 20568672 intron CR45347 + chr2L 20568873 intron CR45347 + chr2L 20569074 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-93 336 chr2L 20576218 20576247 chr2L 20583686 20583715 blood 8 7468 3.0 1.5 2.2 2.5 7497 chr2L 20576218 intergenic CR45347 + chr2L 20579966 intergenic not near genes chr2L 20583715 3` UTR CR44909 - chr2L_8_20575001 chr2L_20575001 RAL-93 337 chr2L 20589822 20589854 chr2L 20590153 20590171 6 323 1.0 1.5 1.2 2.7 349 chr2L 20589822 intron CR44909 - chr2L 20589996 intron CR44909 - chr2L 20590171 intron CR44909 - chr2L_6_20590001 chr2L_20590001 RAL-93 338 chr2L 20623918 20623943 chr2L 20623997 20624019 5 78 1.5 2.0 1.8 1.8 101 chr2L 20623918 intron CR44909 - chr2L 20623968 intron CR44909 - chr2L 20624019 intron CR44909 - chr2L_5_20620001 chr2L_20620001 RAL-93 339 chr2L 20835806 20835839 chr2L 20836523 20836556 Quasimodo 4 717 1.0 1.0 1.0 2.0 750 chr2L 20835806 5` UTR Oseg5 - chr2L 20836181 intergenic Oseg5 -,Spn38F - chr2L 20836556 intergenic Spn38F - chr2L_4_20835001 chr2L_20835001 RAL-93 340 chr2L 20901471 20901488 chr2L 20902634 20902652 1360 4 1164 1.5 4.5 3.0 1.0 1181 chr2L 20901471 intron,intron CG43739 -,sky - chr2L 20902062 intron,intron CG43739 -,sky - chr2L 20902652 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-93 341 chr2L 20947438 20947463 chr2L 20947512 20947542 12 76 2.5 2.0 2.2 3.8 104 chr2L 20947438 3` UTR CR44606 - chr2L 20947490 3` UTR CR44606 - chr2L 20947542 3` UTR CR44606 - chr2L_12_20945001 chr2L_20945001 RAL-93 342 chr2L 20967081 20967103 chr2L 20967167 20967189 6 86 1.5 1.0 1.2 2.7 108 chr2L 20967081 3` UTR CG42238 - chr2L 20967135 3` UTR CG42238 - chr2L 20967189 3` UTR CG42238 - chr2L_6_20965001 chr2L_20965001 RAL-93 343 chr2L 20976648 20976680 chr2L 20981463 20981493 X-element 14 4814 0.5 3.5 2.0 4.7 4845 chr2L 20976648 intron CG42238 - chr2L 20979070 intron CG42238 - chr2L 20981493 intron CG42238 - chr2L_14_20975001 chr2L_20975001 RAL-93 344 chr2L 21020282 21020307 chr2L 21023959 21023983 NOF 8 3676 3.0 3.5 3.2 1.9 3701 chr2L 21020282 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21023983 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-93 345 chr2L 21041148 21041168 chr2L 21049409 21049428 Tirant 4 8258 3.0 5.0 4.0 0.8 8280 chr2L 21041148 intron CG42238 - chr2L 21045288 intron CG42238 - chr2L 21049428 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-93 346 chr2L 21286604 21286630 chr2L 21286682 21286708 6 78 1.0 1.5 1.2 2.7 104 chr2L 21286604 exon Mio - chr2L 21286656 intron Mio - chr2L 21286708 intron Mio - chr2L_6_21285001 chr2L_21285001 RAL-93 347 chr2L 21653190 21653217 chr2L 21656494 21656521 invader4 6 3304 2.0 1.0 1.5 2.4 3331 chr2L 21653190 intergenic not near genes chr2L 21654856 intergenic not near genes chr2L 21656521 intergenic not near genes chr2L_6_21650001 chr2L_21650001 RAL-93 348 chr2L 21819329 21819357 chr2L 21819416 21819426 10 85 2.0 3.0 2.5 2.9 97 chr2L 21819329 intergenic CR44786 + chr2L 21819378 intergenic CR44786 + chr2L 21819426 intergenic CR44786 + chr2L_10_21815001 chr2L_21815001 RAL-93 349 chr2L 21981682 21981716 chr2L 21990847 21990881 roo 17 9165 3.0 5.5 4.2 3.3 9199 chr2L 21981682 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990881 exon CG2528 - chr2L_17_21985001 chr2L_21985001 RAL-93 350 chr2L 22077296 22077317 chr2L 22077377 22077398 4 80 1.5 2.5 2.0 1.3 102 chr2L 22077296 intergenic not near genes chr2L 22077347 intergenic not near genes chr2L 22077398 intergenic not near genes chr2L_4_22075001 chr2L_22075001 RAL-93 351 chr2L 22239430 22239456 chr2L 22239506 22239537 11 80 3.0 2.0 2.5 3.1 107 chr2L 22239430 3` UTR CR43765 - chr2L 22239484 3` UTR CR43765 - chr2L 22239537 3` UTR CR43765 - chr2L_11_22235001 chr2L_22235001 RAL-93 352 chr2L 22350264 22350297 chr2L 22350365 22350399 8 100 1.5 3.5 2.5 2.3 135 chr2L 22350264 intron CG17018 + chr2L 22350332 intron CG17018 + chr2L 22350399 intron CG17018 + chr2L_8_22350001 chr2L_22350001 RAL-93 353 chr2L 22510410 22510418 chr2L 22510619 22510619 4 206 8.5 2.0 5.2 0.6 209 chr2L 22510410 intergenic not near genes chr2L 22510514 intergenic not near genes chr2L 22510619 intergenic not near genes chr2L_4_22510001 chr2L_22510001 RAL-93 354 chr2L 22545980 22546010 chr2L 22546073 22546100 14 94 2.0 1.0 1.5 5.6 120 chr2L 22545980 intron CG17490 + chr2L 22546040 intron CG17490 + chr2L 22546100 intron CG17490 + chr2L_14_22545001 chr2L_22545001 RAL-93 355 chr2L 22548924 22548944 chr2L 22550149 22550169 1360 7 1225 0.0 1.0 0.5 4.7 1245 chr2L 22548924 intergenic CG17490 + chr2L 22549546 intergenic not near genes chr2L 22550169 intergenic CG17493 + chr2L_7_22545001 chr2L_22545001 RAL-93 356 chr2L 22679810 22679820 chr2L 22684582 22684592 F-element 5 4771 1.0 4.5 2.8 1.3 4782 chr2L 22679810 intron CG40006 - chr2L 22682201 intron CG40006 - chr2L 22684592 intron CG40006 - chr2L_5_22680001 chr2L_22680001 RAL-93 357 chr2L 22693917 22693951 chr2L 22694004 22694038 10 84 1.5 4.0 2.8 2.6 121 chr2L 22693917 intron CG40006 - chr2L 22693978 intron CG40006 - chr2L 22694038 intron CG40006 - chr2L_10_22690001 chr2L_22690001 RAL-93 358 chr2R 529321 529354 chr2R 537946 537979 Max-element 9 8624 0.5 1.0 0.8 5.0 8658 chr2R 529321 intron CG40378 + chr2R 533650 intron CG40378 + chr2R 537979 intron CG40378 + chr2R_9_530001 chr2R_530001 RAL-93 359 chr2R 552760 552773 chr2R 553977 553991 1360 4 1218 1.0 3.0 2.0 1.3 1231 chr2R 552760 intron CG40378 + chr2R 553376 intron CG40378 + chr2R 553991 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-93 360 chr2R 1090278 1090296 chr2R 1090370 1090390 8 93 3.0 1.0 2.0 2.7 112 chr2R 1090278 intron rl + chr2R 1090334 intron rl + chr2R 1090390 intron rl + chr2R_8_1090001 chr2R_1090001 RAL-93 361 chr2R 1317835 1317868 chr2R 1318144 1318177 8 305 19.0 16.5 17.8 0.4 342 chr2R 1317835 intergenic not near genes chr2R 1318006 intergenic not near genes chr2R 1318177 intergenic not near genes chr2R_8_1315001 chr2R_1315001 RAL-93 362 chr2R 1365867 1365895 chr2R 1365979 1366006 6 111 2.0 2.0 2.0 2.0 139 chr2R 1365867 intron l(2)41Ab + chr2R 1365936 intron l(2)41Ab + chr2R 1366006 intron l(2)41Ab + chr2R_6_1365001 chr2R_1365001 RAL-93 363 chr2R 1880704 1880706 chr2R 5639655 5639655 4 3758950 16.5 9.0 12.8 0.3 3758951 chr2R 1880704 intron CG17684 - chr2R 3760180 intergenic not near genes chr2R 5639655 intergenic not near genes chr2R_4_3760001 chr2R_3760001 RAL-93 364 chr2R 2015132 2015163 chr2R 2015209 2015235 5 75 1.0 0.0 0.5 3.3 103 chr2R 2015132 intron CG17684 - chr2R 2015184 intron CG17684 - chr2R 2015235 intron CG17684 - chr2R_5_2015001 chr2R_2015001 RAL-93 365 chr2R 2498988 2499004 chr2R 2508135 2508151 roo 6 9147 3.5 3.0 3.2 1.4 9163 chr2R 2498988 intron MFS17 - chr2R 2503570 intron MFS17 - chr2R 2508151 intron MFS17 - chr2R_6_2500001 chr2R_2500001 RAL-93 366 chr2R 2508314 2508337 chr2R 2508452 2508475 8 138 1.5 5.0 3.2 1.9 161 chr2R 2508314 intron MFS17 - chr2R 2508394 intron MFS17 - chr2R 2508475 intron MFS17 - chr2R_8_2505001 chr2R_2505001 RAL-93 367 chr2R 3144097 3144108 chr2R 3393375 3393386 Doc 4 249277 8.5 2.5 5.5 0.6 249289 chr2R 3144097 intron CG42596 + chr2R 3268742 intergenic not near genes chr2R 3393386 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-93 368 chr2R 3291929 3292101 chr2R 3915098 3915261 5 623167 7.0 15.5 11.2 0.4 623332 chr2R 3291929 intergenic not near genes chr2R 3603595 intergenic not near genes chr2R 3915261 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-93 369 chr2R 3818931 3818940 chr2R 3819047 3819055 5 116 12.0 3.0 7.5 0.6 124 chr2R 3818931 intergenic not near genes chr2R 3818993 intergenic not near genes chr2R 3819055 intergenic not near genes chr2R_5_3815001 chr2R_3815001 RAL-93 370 chr2R 4312973 4312986 chr2R 4313057 4313070 6 84 2.0 4.5 3.2 1.4 97 chr2R 4312973 intergenic not near genes chr2R 4313022 intergenic not near genes chr2R 4313070 intergenic not near genes chr2R_6_4310001 chr2R_4310001 RAL-93 371 chr2R 4621316 4621344 chr2R 4621856 4621884 9 540 3.0 2.0 2.5 2.6 568 chr2R 4621316 3` UTR CR44101 - chr2R 4621600 3` UTR CR44101 - chr2R 4621884 3` UTR CR44101 - chr2R_9_4620001 chr2R_4620001 RAL-93 372 chr2R 4622963 4622987 chr2R 4624119 4624146 1360 9 1158 1.5 4.5 3.0 2.2 1183 chr2R 4622963 intergenic CR44101 - chr2R 4623554 intergenic not near genes chr2R 4624146 intergenic not near genes chr2R_9_4620001 chr2R_4620001 RAL-93 373 chr2R 4745529 4745543 chr2R 4747123 4747147 5 1602 3.0 1.5 2.2 1.6 1618 chr2R 4745529 intron conu + chr2R 4746338 intron conu + chr2R 4747147 intron conu + chr2R_5_4745001 chr2R_4745001 RAL-93 374 chr2R 4815770 4815797 chr2R 4815852 4815882 11 82 3.0 3.0 3.0 2.8 112 chr2R 4815770 3` UTR CG17528 - chr2R 4815826 3` UTR CG17528 - chr2R 4815882 3` UTR CG17528 - chr2R_11_4815001 chr2R_4815001 RAL-93 375 chr2R 4916092 4916119 chr2R 4916170 4916197 10 78 2.5 1.5 2.0 3.3 105 chr2R 4916092 intergenic not near genes chr2R 4916144 intergenic not near genes chr2R 4916197 intergenic not near genes chr2R_10_4915001 chr2R_4915001 RAL-93 376 chr2R 4996334 4996347 chr2R 4996462 4996475 6 128 0.5 2.0 1.2 2.7 141 chr2R 4996334 intron Ir41a + chr2R 4996404 intron Ir41a + chr2R 4996475 intron Ir41a + chr2R_6_4995001 chr2R_4995001 RAL-93 377 chr2R 5062772 5062790 chr2R 5062866 5062884 9 92 3.5 2.5 3.0 2.2 112 chr2R 5062772 intergenic not near genes chr2R 5062828 intergenic not near genes chr2R 5062884 intergenic not near genes chr2R_9_5060001 chr2R_5060001 RAL-93 378 chr2R 5062796 5062801 chr2R 5062865 5062895 5 88 2.0 2.5 2.2 1.6 99 chr2R 5062796 intergenic not near genes chr2R 5062846 intergenic not near genes chr2R 5062895 intergenic not near genes chr2R_5_5060001 chr2R_5060001 RAL-93 379 chr2R 5068878 5068899 chr2R 5071005 5071026 7 2127 2.5 12.5 7.5 0.8 2148 chr2R 5068878 intron TpnC41C - chr2R 5069952 intron TpnC41C - chr2R 5071026 intergenic not near genes chr2R_7_5065001 chr2R_5065001 RAL-93 380 chr2R 5068873 5068893 chr2R 5071645 5071665 4 2772 2.5 10.5 6.5 0.5 2792 chr2R 5068873 intron TpnC41C - chr2R 5070269 intergenic TpnC41C - chr2R 5071665 intergenic not near genes chr2R_4_5070001 chr2R_5070001 RAL-93 381 chr2R 5075347 5075374 chr2R 5075762 5075772 4 411 2.5 4.5 3.5 0.9 425 chr2R 5075347 intergenic not near genes chr2R 5075560 intergenic not near genes chr2R 5075772 intergenic not near genes chr2R_4_5075001 chr2R_5075001 RAL-93 382 chr2R 5080799 5080818 chr2R 5080889 5080909 7 90 1.0 1.5 1.2 3.2 110 chr2R 5080799 intergenic not near genes chr2R 5080854 intergenic not near genes chr2R 5080909 intergenic not near genes chr2R_7_5080001 chr2R_5080001 RAL-93 383 chr2R 5192234 5192243 chr2R 5192335 5192340 4 100 1.5 2.0 1.8 1.4 106 chr2R 5192234 intron Nipped-A - chr2R 5192287 intron Nipped-A - chr2R 5192340 intron Nipped-A - chr2R_4_5190001 chr2R_5190001 RAL-93 384 chr2R 5209779 5209812 chr2R 5210312 5210345 8 532 3.5 1.0 2.2 2.5 566 chr2R 5209779 intron Nipped-A - chr2R 5210062 intron Nipped-A - chr2R 5210345 intron Nipped-A - chr2R_8_5210001 chr2R_5210001 RAL-93 385 chr2R 5237348 5237352 chr2R 5237430 5237434 4 82 2.5 0.0 1.2 1.8 86 chr2R 5237348 intron Nipped-A - chr2R 5237391 intron Nipped-A - chr2R 5237434 intron Nipped-A - chr2R_4_5235001 chr2R_5235001 RAL-93 386 chr2R 5303493 5303514 chr2R 5303579 5303592 5 86 14.5 12.0 13.2 0.4 99 chr2R 5303493 intergenic not near genes chr2R 5303542 intergenic not near genes chr2R 5303592 intergenic not near genes chr2R_5_5300001 chr2R_5300001 RAL-93 387 chr2R 5356392 5356427 chr2R 5356468 5356498 11 72 1.5 2.5 2.0 3.7 106 chr2R 5356392 intergenic not near genes chr2R 5356445 intergenic not near genes chr2R 5356498 intergenic not near genes chr2R_11_5355001 chr2R_5355001 RAL-93 388 chr2R 5455774 5455801 chr2R 5455852 5455879 5 78 2.0 4.0 3.0 1.2 105 chr2R 5455774 3` UTR laccase2 + chr2R 5455826 3` UTR laccase2 + chr2R 5455879 3` UTR laccase2 + chr2R_5_5455001 chr2R_5455001 RAL-93 389 chr2R 5543198 5543220 chr2R 5547282 5547304 invader1 7 4084 0.0 1.5 0.8 3.9 4106 chr2R 5543198 intron CG30438 + chr2R 5545251 intron CG30438 + chr2R 5547304 intron CG30438 + chr2R_7_5545001 chr2R_5545001 RAL-93 390 chr2R 5581406 5581424 chr2R 5627615 5627633 4 46208 0.0 13.5 6.8 0.5 46227 chr2R 5581406 intergenic not near genes chr2R 5604520 intron Fis1 - chr2R 5627633 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-93 391 chr2R 5794234 5794259 chr2R 5794361 5794387 7 128 5.0 2.0 3.5 1.6 153 chr2R 5794234 intergenic not near genes chr2R 5794310 intergenic not near genes chr2R 5794387 intergenic not near genes chr2R_7_5790001 chr2R_5790001 RAL-93 392 chr2R 5861290 5861307 chr2R 5861410 5861428 9 120 2.0 5.0 3.5 2.0 138 chr2R 5861290 intergenic dpr12 + chr2R 5861359 intergenic not near genes chr2R 5861428 intergenic not near genes chr2R_9_5860001 chr2R_5860001 RAL-93 393 chr2R 5869276 5869291 chr2R 5874352 5874367 flea 7 5076 3.0 2.0 2.5 2.0 5091 chr2R 5869276 intergenic not near genes chr2R 5871822 intergenic not near genes chr2R 5874367 intergenic not near genes chr2R_7_5870001 chr2R_5870001 RAL-93 394 chr2R 5947939 5947965 chr2R 5948089 5948114 13 150 1.5 0.0 0.8 7.2 175 chr2R 5947939 intergenic not near genes chr2R 5948026 intergenic not near genes chr2R 5948114 intergenic not near genes chr2R_13_5945001 chr2R_5945001 RAL-93 395 chr2R 6037459 6037479 chr2R 6037544 6037564 5 85 0.5 0.5 0.5 3.3 105 chr2R 6037459 intron CG14591 - chr2R 6037512 intron CG14591 - chr2R 6037564 intron CG14591 - chr2R_5_6035001 chr2R_6035001 RAL-93 396 chr2R 6096717 6096750 chr2R 6101915 6101947 BS 10 5189 5.0 5.0 5.0 1.7 5230 chr2R 6096717 intron EcR - chr2R 6099332 intron EcR - chr2R 6101947 intron EcR - chr2R_10_6095001 chr2R_6095001 RAL-93 397 chr2R 6129326 6129348 chr2R 6129403 6129426 6 75 0.5 2.5 1.5 2.4 100 chr2R 6129326 intron EcR - chr2R 6129376 intron EcR - chr2R 6129426 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-93 398 chr2R 6168203 6168223 chr2R 6168285 6168305 5 81 1.0 1.0 1.0 2.5 102 chr2R 6168203 intron EcR - chr2R 6168254 intron EcR - chr2R 6168305 intron EcR - chr2R_5_6165001 chr2R_6165001 RAL-93 399 chr2R 6494527 6494555 chr2R 6499289 6499317 F-element 11 4762 3.0 1.0 2.0 3.7 4790 chr2R 6494527 intergenic not near genes chr2R 6496922 intergenic not near genes chr2R 6499317 intergenic not near genes chr2R_11_6495001 chr2R_6495001 RAL-93 400 chr2R 6530769 6530795 chr2R 6530849 6530875 5 80 2.0 1.0 1.5 2.0 106 chr2R 6530769 intron jing + chr2R 6530822 intron jing + chr2R 6530875 intron jing + chr2R_5_6530001 chr2R_6530001 RAL-93 401 chr2R 6541074 6541102 chr2R 6541150 6541177 4 76 3.0 2.5 2.8 1.1 103 chr2R 6541074 intron jing + chr2R 6541126 intron jing + chr2R 6541177 intron jing + chr2R_4_6540001 chr2R_6540001 RAL-93 402 chr2R 6551997 6552017 chr2R 6552094 6552120 6 102 7.0 1.5 4.2 1.2 123 chr2R 6551997 intron jing + chr2R 6552058 intron jing + chr2R 6552120 intron jing + chr2R_6_6550001 chr2R_6550001 RAL-93 403 chr2R 6612128 6612159 chr2R 6612208 6612239 5 79 0.5 3.0 1.8 1.8 111 chr2R 6612128 intron jing + chr2R 6612184 intron jing + chr2R 6612239 intron jing + chr2R_5_6610001 chr2R_6610001 RAL-93 404 chr2R 6646812 6646826 chr2R 6647083 6647096 4 272 2.0 1.5 1.8 1.4 284 chr2R 6646812 intergenic not near genes chr2R 6646954 intergenic not near genes chr2R 6647096 intergenic not near genes chr2R_4_6645001 chr2R_6645001 RAL-93 405 chr2R 6647342 6647355 chr2R 6647418 6647431 5 76 4.5 0.5 2.5 1.4 89 chr2R 6647342 intergenic not near genes chr2R 6647386 intergenic not near genes chr2R 6647431 intergenic not near genes chr2R_5_6645001 chr2R_6645001 RAL-93 406 chr2R 6857077 6857115 chr2R 6857197 6857234 8 119 4.0 4.0 4.0 1.6 157 chr2R 6857077 intergenic not near genes chr2R 6857156 intergenic not near genes chr2R 6857234 intergenic not near genes chr2R_8_6855001 chr2R_6855001 RAL-93 407 chr2R 6962448 6962481 chr2R 6962805 6962837 14 356 3.0 3.5 3.2 3.3 389 chr2R 6962448 intron,intron mim -,CheB42c - chr2R 6962642 intron,intron mim -,CheB42c - chr2R 6962837 intron,intron mim -,CheB42c - chr2R_14_6960001 chr2R_6960001 RAL-93 408 chr2R 7113947 7113950 chr2R 7114108 7114111 4 161 7.0 4.0 5.5 0.6 164 chr2R 7113947 intron esn + chr2R 7114029 intron esn + chr2R 7114111 intron esn + chr2R_4_7110001 chr2R_7110001 RAL-93 409 chr2R 7113951 7113971 chr2R 7114105 7114132 7 157 2.5 4.0 3.2 1.7 181 chr2R 7113951 intron esn + chr2R 7114042 intron esn + chr2R 7114132 intron esn + chr2R_7_7110001 chr2R_7110001 RAL-93 410 chr2R 7209870 7209874 chr2R 7217630 7217630 roo 4 7760 1.5 3.5 2.5 1.1 7760 chr2R 7209870 intron pk + chr2R 7213750 intron pk + chr2R 7217630 intron pk + chr2R_4_7210001 chr2R_7210001 RAL-93 411 chr2R 7235825 7235852 chr2R 7240917 7240922 jockey 5 5087 3.0 5.0 4.0 1.0 5097 chr2R 7235825 intergenic not near genes chr2R 7238374 intergenic not near genes chr2R 7240922 intergenic not near genes chr2R_5_7235001 chr2R_7235001 RAL-93 412 chr2R 7306564 7306595 chr2R 7306642 7306672 10 77 3.5 5.0 4.2 1.9 108 chr2R 7306564 intergenic not near genes chr2R 7306618 intergenic not near genes chr2R 7306672 intergenic not near genes chr2R_10_7305001 chr2R_7305001 RAL-93 413 chr2R 7353392 7353416 chr2R 7353498 7353522 7 106 2.0 2.5 2.2 2.2 130 chr2R 7353392 intron Dscam1 - chr2R 7353457 intron Dscam1 - chr2R 7353522 intron Dscam1 - chr2R_7_7350001 chr2R_7350001 RAL-93 414 chr2R 7405392 7405422 chr2R 7405663 7405693 5 269 2.5 3.5 3.0 1.2 301 chr2R 7405392 intron Eaf - chr2R 7405542 intron Eaf - chr2R 7405693 intron Eaf - chr2R_5_7405001 chr2R_7405001 RAL-93 415 chr2R 7434899 7434922 chr2R 7439200 7439222 Juan 4 4301 1.5 3.0 2.2 1.2 4323 chr2R 7434899 intergenic so + chr2R 7437060 intergenic not near genes chr2R 7439222 intergenic not near genes chr2R_4_7435001 chr2R_7435001 RAL-93 416 chr2R 7551686 7551707 chr2R 7551777 7551798 4 90 5.0 2.5 3.8 0.8 112 chr2R 7551686 intron Corin + chr2R 7551742 intron Corin + chr2R 7551798 intron Corin + chr2R_4_7550001 chr2R_7550001 RAL-93 417 chr2R 7608427 7608435 chr2R 7613606 7613638 I-element 4 5197 0.5 0.0 0.2 3.3 5211 chr2R 7608427 intron CG1358 - chr2R 7611032 intron CG1358 - chr2R 7613638 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-93 418 chr2R 7642339 7642362 chr2R 7642504 7642529 6 163 3.0 2.0 2.5 1.7 190 chr2R 7642339 intron CG43340 + chr2R 7642434 intron CG43340 + chr2R 7642529 intron CG43340 + chr2R_6_7640001 chr2R_7640001 RAL-93 419 chr2R 7642867 7642886 chr2R 7642947 7642966 6 80 2.0 1.0 1.5 2.4 99 chr2R 7642867 intron CG43340 + chr2R 7642916 intron CG43340 + chr2R 7642966 intron CG43340 + chr2R_6_7640001 chr2R_7640001 RAL-93 420 chr2R 7815685 7815705 chr2R 7822149 7822174 Burdock 5 6468 1.5 4.5 3.0 1.2 6489 chr2R 7815685 intergenic CG1882 + chr2R 7818930 intergenic not near genes chr2R 7822174 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 RAL-93 421 chr2R 7869190 7869213 chr2R 7873976 7873999 Doc 8 4785 4.5 6.0 5.2 1.3 4809 chr2R 7869190 intron Dgk - chr2R 7871594 intron Dgk - chr2R 7873999 intron Dgk - chr2R_8_7870001 chr2R_7870001 RAL-93 422 chr2R 7897137 7897156 chr2R 7897226 7897245 7 89 0.0 7.0 3.5 1.6 108 chr2R 7897137 intron CG30377 + chr2R 7897191 intron CG30377 + chr2R 7897245 intron CG30377 + chr2R_7_7895001 chr2R_7895001 RAL-93 423 chr2R 7916427 7916446 chr2R 7916508 7916531 9 84 3.0 2.0 2.5 2.6 104 chr2R 7916427 5` UTR CG12159 - chr2R 7916479 intergenic CG12159 -,Cul1 + chr2R 7916531 intergenic CG12159 -,Cul1 + chr2R_9_7915001 chr2R_7915001 RAL-93 424 chr2R 8160934 8160953 chr2R 8161024 8161043 1360 12 89 3.0 10.5 6.8 1.5 109 chr2R 8160934 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_12_8160001 chr2R_8160001 RAL-93 425 chr2R 8177652 8177656 chr2R 8177803 8177807 4 151 7.0 1.0 4.0 0.8 155 chr2R 8177652 intron LRP1 + chr2R 8177730 intron LRP1 + chr2R 8177807 intron LRP1 + chr2R_4_8175001 chr2R_8175001 RAL-93 426 chr2R 8177661 8177681 chr2R 8177799 8177832 7 148 1.0 0.5 0.8 3.9 171 chr2R 8177661 intron LRP1 + chr2R 8177746 intron LRP1 + chr2R 8177832 intron LRP1 + chr2R_7_8175001 chr2R_8175001 RAL-93 427 chr2R 8330878 8330892 chr2R 8331362 8331378 roo 6 484 5.0 2.0 3.5 1.3 500 chr2R 8330878 intron pdm3 + chr2R 8331128 intron pdm3 + chr2R 8331378 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-93 428 chr2R 8398221 8398239 chr2R 8402987 8403015 Doc 9 4776 5.5 3.0 4.2 1.7 4794 chr2R 8398221 intron CG2121 - chr2R 8400618 intron CG2121 - chr2R 8403015 intron CG2121 - chr2R_9_8400001 chr2R_8400001 RAL-93 429 chr2R 8452042 8452059 chr2R 8452125 8452142 4 82 2.0 3.5 2.8 1.1 100 chr2R 8452042 intergenic Mal-A1 - chr2R 8452092 intergenic Mal-A1 - chr2R 8452142 intergenic Mal-A1 - chr2R_4_8450001 chr2R_8450001 RAL-93 430 chr2R 8561514 8561532 chr2R 8561584 8561608 5 71 5.0 3.0 4.0 1.0 94 chr2R 8561514 intergenic not near genes chr2R 8561561 intergenic not near genes chr2R 8561608 intergenic not near genes chr2R_5_8560001 chr2R_8560001 RAL-93 431 chr2R 8572824 8572835 chr2R 8576803 8576809 4 3976 10.5 19.0 14.8 0.3 3985 chr2R 8572824 intergenic not near genes chr2R 8574816 intron CG42326 - chr2R 8576809 exon CG42326 - chr2R_4_8570001 chr2R_8570001 RAL-93 432 chr2R 8615778 8615807 chr2R 8615890 8615920 11 113 2.0 1.5 1.8 3.9 142 chr2R 8615778 intron Cirl + chr2R 8615849 intron Cirl + chr2R 8615920 5` UTR Cirl + chr2R_11_8615001 chr2R_8615001 RAL-93 433 chr2R 8654170 8654189 chr2R 8654252 8654271 5 82 1.5 0.5 1.0 2.5 101 chr2R 8654170 intron ptc + chr2R 8654220 intron ptc + chr2R 8654271 intron ptc + chr2R_5_8650001 chr2R_8650001 RAL-93 434 chr2R 8672552 8672568 chr2R 8675160 8675180 5 2609 2.0 19.0 10.5 0.4 2628 chr2R 8672552 intron Acsl + chr2R 8673866 intron Acsl + chr2R 8675180 intron Acsl + chr2R_5_8670001 chr2R_8670001 RAL-93 435 chr2R 8722771 8722791 chr2R 8723012 8723032 pogo 7 240 2.5 6.0 4.2 1.3 261 chr2R 8722771 intron CG14767 - chr2R 8722902 intron CG14767 - chr2R 8723032 intron CG14767 - chr2R_7_8720001 chr2R_8720001 RAL-93 436 chr2R 8759760 8759789 chr2R 8759838 8759868 9 79 0.5 2.0 1.2 4.1 108 chr2R 8759760 intergenic CG8740 + chr2R 8759814 intergenic CG8740 + chr2R 8759868 intergenic CG8740 + chr2R_9_8755001 chr2R_8755001 RAL-93 437 chr2R 8833426 8833453 chr2R 8833508 8833535 8 82 2.5 3.5 3.0 2.0 109 chr2R 8833426 intron sns + chr2R 8833480 intron sns + chr2R 8833535 intron sns + chr2R_8_8830001 chr2R_8830001 RAL-93 438 chr2R 8907239 8907268 chr2R 8907487 8907517 7 249 0.0 3.5 1.8 2.5 278 chr2R 8907239 intergenic CG8258 -,CG30349 + chr2R 8907378 intergenic CG30349 +,CG8258 - chr2R 8907517 5` UTR CG30349 + chr2R_7_8905001 chr2R_8905001 RAL-93 439 chr2R 9026829 9026845 chr2R 9026949 9026965 4 120 3.0 1.0 2.0 1.3 136 chr2R 9026829 intron CG8170 - chr2R 9026897 intron CG8170 - chr2R 9026965 intron CG8170 - chr2R_4_9025001 chr2R_9025001 RAL-93 440 chr2R 9047424 9047435 chr2R 9047519 9047530 5 95 1.5 2.0 1.8 1.8 106 chr2R 9047424 intron CG13743 - chr2R 9047477 intron CG13743 - chr2R 9047530 intron CG13743 - chr2R_5_9045001 chr2R_9045001 RAL-93 441 chr2R 9091814 9091833 chr2R 9091919 9091938 8 101 2.5 1.5 2.0 2.7 124 chr2R 9091814 intron CG8080 - chr2R 9091876 intron CG8080 - chr2R 9091938 intron CG8080 - chr2R_8_9090001 chr2R_9090001 RAL-93 442 chr2R 9212691 9212722 chr2R 9213177 9213208 roo 12 484 5.5 3.5 4.5 2.2 517 chr2R 9212691 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213208 5` UTR CR45309 + chr2R_12_9210001 chr2R_9210001 RAL-93 443 chr2R 9281520 9281539 chr2R 9281596 9281611 4 75 1.0 2.5 1.8 1.4 91 chr2R 9281520 intron Pkn - chr2R 9281566 intron Pkn - chr2R 9281611 intron Pkn - chr2R_4_9280001 chr2R_9280001 RAL-93 444 chr2R 9480077 9480102 chr2R 9490608 9490633 roo 5 10531 0.5 0.5 0.5 3.3 10556 chr2R 9480077 intergenic not near genes chr2R 9485355 intergenic not near genes chr2R 9490633 intergenic not near genes chr2R_5_9485001 chr2R_9485001 RAL-93 445 chr2R 9817431 9817452 chr2R 9817510 9817530 6 79 2.5 4.0 3.2 1.4 99 chr2R 9817431 intron,exon CG1648 -,lectin-46Ca + chr2R 9817480 intron,intron CG1648 -,lectin-46Ca + chr2R 9817530 intron,intron CG1648 -,lectin-46Ca + chr2R_6_9815001 chr2R_9815001 RAL-93 446 chr2R 9832849 9832878 chr2R 9832938 9832967 5 87 0.0 3.0 1.5 2.0 118 chr2R 9832849 intron hebe - chr2R 9832908 intron hebe - chr2R 9832967 intron hebe - chr2R_5_9830001 chr2R_9830001 RAL-93 447 chr2R 9844251 9844282 chr2R 9844348 9844379 18 95 2.5 3.5 3.0 4.5 128 chr2R 9844251 exon CG1667 + chr2R 9844315 exon CG1667 + chr2R 9844379 exon CG1667 + chr2R_18_9840001 chr2R_9840001 RAL-93 448 chr2R 9869679 9869695 chr2R 9869789 9869806 5 111 1.0 1.5 1.2 2.3 127 chr2R 9869679 intron cbx - chr2R 9869742 intron cbx - chr2R 9869806 intron cbx - chr2R_5_9865001 chr2R_9865001 RAL-93 449 chr2R 9884439 9884449 chr2R 9892585 9892594 6 8146 20.5 27.0 23.8 0.2 8155 chr2R 9884439 intron CG1513 - chr2R 9888516 intron,exon CG1513 -,CG12923 + chr2R 9892594 exon CG30007 + chr2R_6_9885001 chr2R_9885001 RAL-93 450 chr2R 9945433 9945469 chr2R 9945629 9945665 BS 13 194 3.5 1.5 2.5 3.7 232 chr2R 9945433 intron Mef2 - chr2R 9945549 intron Mef2 - chr2R 9945665 intron Mef2 - chr2R_13_9945001 chr2R_9945001 RAL-93 451 chr2R 10005849 10005884 chr2R 10007013 10007048 1360 11 1163 3.0 2.0 2.5 3.1 1199 chr2R 10005849 intron Pka-R2 - chr2R 10006448 intron Pka-R2 - chr2R 10007048 intron Pka-R2 - chr2R_11_10005001 chr2R_10005001 RAL-93 452 chr2R 10122742 10122750 chr2R 10122952 10122960 4 209 2.0 0.5 1.2 1.8 218 chr2R 10122742 intergenic Ccs - chr2R 10122851 intergenic Ccs - chr2R 10122960 intergenic Ccs - chr2R_4_10120001 chr2R_10120001 RAL-93 453 chr2R 10132205 10132220 chr2R 10132285 10132299 5 80 0.0 5.0 2.5 1.4 94 chr2R 10132205 intron gem + chr2R 10132252 intron gem + chr2R 10132299 intron gem + chr2R_5_10130001 chr2R_10130001 RAL-93 454 chr2R 10147646 10147677 chr2R 10147729 10147759 8 83 4.0 2.0 3.0 2.0 113 chr2R 10147646 exon KCNQ - chr2R 10147702 intron KCNQ - chr2R 10147759 intron KCNQ - chr2R_8_10145001 chr2R_10145001 RAL-93 455 chr2R 10216192 10216223 chr2R 10216269 10216301 11 77 0.5 3.0 1.8 3.9 109 chr2R 10216192 intron,intron CG12912 -,Hr46 - chr2R 10216246 intron,intron CG12912 -,Hr46 - chr2R 10216301 intron,intron CG12912 -,Hr46 - chr2R_11_10215001 chr2R_10215001 RAL-93 456 chr2R 10387986 10388000 chr2R 10388083 10388096 4 95 0.0 3.5 1.8 1.4 110 chr2R 10387986 intron CG42732 - chr2R 10388041 intron CG42732 - chr2R 10388096 intron CG42732 - chr2R_4_10385001 chr2R_10385001 RAL-93 457 chr2R 10469024 10469048 chr2R 10469150 10469174 10 126 2.5 1.5 2.0 3.3 150 chr2R 10469024 intron CG11777 + chr2R 10469099 intron CG11777 + chr2R 10469174 intron CG11777 + chr2R_10_10465001 chr2R_10465001 RAL-93 458 chr2R 10577397 10577412 chr2R 10577504 10577519 5 107 1.5 0.0 0.8 2.8 122 chr2R 10577397 intron psq + chr2R 10577458 intron psq + chr2R 10577519 intron psq + chr2R_5_10575001 chr2R_10575001 RAL-93 459 chr2R 10585576 10585587 chr2R 10594158 10594170 Tirant 4 8583 2.0 3.5 2.8 1.1 8594 chr2R 10585576 intron psq + chr2R 10589873 intron psq + chr2R 10594170 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-93 460 chr2R 10644058 10644064 chr2R 10644136 10644142 5 78 2.5 0.5 1.5 2.0 84 chr2R 10644058 intron Git - chr2R 10644100 intron Git - chr2R 10644142 intron Git - chr2R_5_10640001 chr2R_10640001 RAL-93 461 chr2R 10781400 10781425 chr2R 10781760 10781782 14 358 3.5 2.0 2.8 3.7 382 chr2R 10781400 intron CG33144 - chr2R 10781591 intron CG33144 - chr2R 10781782 intron CG33144 - chr2R_14_10780001 chr2R_10780001 RAL-93 462 chr2R 10790142 10790175 chr2R 10790230 10790263 8 87 0.5 4.0 2.2 2.5 121 chr2R 10790142 intron CG33144 - chr2R 10790202 intron CG33144 - chr2R 10790263 intron CG33144 - chr2R_8_10790001 chr2R_10790001 RAL-93 463 chr2R 10909394 10909423 chr2R 10909507 10909536 4 113 1.5 2.0 1.8 1.4 142 chr2R 10909394 intergenic not near genes chr2R 10909465 intergenic Obp47a + chr2R 10909536 intergenic Obp47a + chr2R_4_10905001 chr2R_10905001 RAL-93 464 chr2R 10937806 10937827 chr2R 10937944 10937965 7 138 0.0 4.5 2.2 2.2 159 chr2R 10937806 intergenic not near genes chr2R 10937886 intergenic not near genes chr2R 10937965 intergenic Spn47C - chr2R_7_10935001 chr2R_10935001 RAL-93 465 chr2R 10959093 10959103 chr2R 10959172 10959182 4 79 1.0 5.0 3.0 1.0 89 chr2R 10959093 intergenic not near genes chr2R 10959138 intergenic not near genes chr2R 10959182 intergenic not near genes chr2R_4_10955001 chr2R_10955001 RAL-93 466 chr2R 10966866 10966890 chr2R 10966946 10966969 6 76 3.0 2.5 2.8 1.6 103 chr2R 10966866 intergenic not near genes chr2R 10966918 intergenic not near genes chr2R 10966969 intergenic not near genes chr2R_6_10965001 chr2R_10965001 RAL-93 467 chr2R 11009812 11009847 chr2R 11018986 11018999 roo 10 9171 0.5 3.5 2.0 3.3 9187 chr2R 11009812 intron luna - chr2R 11014406 intron luna - chr2R 11018999 intron luna - chr2R_10_11010001 chr2R_11010001 RAL-93 468 chr2R 11019885 11019903 chr2R 11024951 11024967 jockey 5 5065 3.0 3.0 3.0 1.2 5082 chr2R 11019885 intron luna - chr2R 11022426 intron luna - chr2R 11024967 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-93 469 chr2R 11102864 11102893 chr2R 11102946 11102975 6 82 4.0 0.0 2.0 2.0 111 chr2R 11102864 intron luna - chr2R 11102920 intron luna - chr2R 11102975 intron luna - chr2R_6_11100001 chr2R_11100001 RAL-93 470 chr2R 11133397 11133429 chr2R 11133520 11133525 8 117 2.5 1.5 2.0 2.7 128 chr2R 11133397 intergenic not near genes chr2R 11133461 intergenic not near genes chr2R 11133525 intergenic not near genes chr2R_8_11130001 chr2R_11130001 RAL-93 471 chr2R 11207813 11207848 chr2R 11208006 11208041 BS 13 193 4.0 2.5 3.2 3.1 228 chr2R 11207813 intron shn + chr2R 11207927 intron shn + chr2R 11208041 intron shn + chr2R_13_11205001 chr2R_11205001 RAL-93 472 chr2R 11249177 11249186 chr2R 11249303 11249310 4 124 2.5 0.0 1.2 1.8 133 chr2R 11249177 intergenic CG43112 + chr2R 11249244 intergenic CG43112 + chr2R 11249310 intergenic CG43112 + chr2R_4_11245001 chr2R_11245001 RAL-93 473 chr2R 11391245 11391275 chr2R 11391314 11391350 11 74 3.5 5.0 4.2 2.1 105 chr2R 11391245 intron sprt - chr2R 11391298 intron sprt - chr2R 11391350 intron sprt - chr2R_11_11390001 chr2R_11390001 RAL-93 474 chr2R 11393507 11393542 chr2R 11393600 11393635 14 92 6.5 1.5 4.0 2.8 128 chr2R 11393507 intron sprt - chr2R 11393571 intron sprt - chr2R 11393635 intron sprt - chr2R_14_11390001 chr2R_11390001 RAL-93 475 chr2R 11415528 11415550 chr2R 11418677 11418696 opus 7 3146 1.0 5.0 3.0 1.8 3168 chr2R 11415528 intron Drip - chr2R 11417112 intron Drip - chr2R 11418696 intron Drip - chr2R_7_11415001 chr2R_11415001 RAL-93 476 chr2R 11472647 11472679 chr2R 11473844 11473876 pogo 6 1197 2.5 3.0 2.8 1.6 1229 chr2R 11472647 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473876 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-93 477 chr2R 11494596 11494634 chr2R 11494685 11494723 12 87 2.0 1.5 1.8 4.3 127 chr2R 11494596 intron inv + chr2R 11494660 intron inv + chr2R 11494723 intron inv + chr2R_12_11490001 chr2R_11490001 RAL-93 478 chr2R 11670843 11670869 chr2R 11670932 11670967 9 95 1.5 2.5 2.0 3.0 124 chr2R 11670843 intron,intron Roc2 -,Tret1-1 + chr2R 11670905 intron,intron Roc2 -,Tret1-1 + chr2R 11670967 intron,intron Roc2 -,Tret1-1 + chr2R_9_11670001 chr2R_11670001 RAL-93 479 chr2R 11671751 11671755 chr2R 11675455 11675460 5 3704 18.5 0.0 9.2 0.5 3709 chr2R 11671751 intron,intron Roc2 -,Tret1-1 + chr2R 11673606 intron,exon Roc2 -,Tret1-1 + chr2R 11675460 intron Roc2 - chr2R_5_11670001 chr2R_11670001 RAL-93 480 chr2R 11760739 11760758 chr2R 11760865 11760889 6 130 4.0 2.0 3.0 1.5 150 chr2R 11760739 intron ths + chr2R 11760814 intron ths + chr2R 11760889 intron ths + chr2R_6_11760001 chr2R_11760001 RAL-93 481 chr2R 11775940 11775967 chr2R 11776023 11776048 7 78 1.5 5.0 3.2 1.7 108 chr2R 11775940 intron ths + chr2R 11775994 intron ths + chr2R 11776048 intron ths + chr2R_7_11775001 chr2R_11775001 RAL-93 482 chr2R 11797067 11797103 chr2R 11797227 11797261 6 160 2.5 0.5 1.5 2.4 194 chr2R 11797067 intron ths + chr2R 11797164 intron ths + chr2R 11797261 intron ths + chr2R_6_11795001 chr2R_11795001 RAL-93 483 chr2R 11945886 11945914 chr2R 11945963 11945991 10 77 2.0 3.5 2.8 2.6 105 chr2R 11945886 intron CG13188 + chr2R 11945938 intron CG13188 + chr2R 11945991 intron CG13188 + chr2R_10_11945001 chr2R_11945001 RAL-93 484 chr2R 11951367 11951374 chr2R 11951444 11951451 6 77 3.0 1.0 2.0 2.0 84 chr2R 11951367 intron CG13188 + chr2R 11951409 intron CG13188 + chr2R 11951451 intron CG13188 + chr2R_6_11950001 chr2R_11950001 RAL-93 485 chr2R 12093955 12093978 chr2R 12094068 12094091 6 112 1.5 3.0 2.2 1.9 136 chr2R 12093955 intron jeb - chr2R 12094023 intron jeb - chr2R 12094091 intron jeb - chr2R_6_12090001 chr2R_12090001 RAL-93 486 chr2R 12187471 12187508 chr2R 12190087 12190124 46 2621 123.0 88.5 105.8 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_46_12185001 chr2R_12185001 RAL-93 487 chr2R 12363388 12363405 chr2R 12363820 12363837 4 432 5.0 0.0 2.5 1.1 449 chr2R 12363388 intergenic CG30043 + chr2R 12363612 intergenic CG30043 + chr2R 12363837 intergenic not near genes chr2R_4_12360001 chr2R_12360001 RAL-93 488 chr2R 12452252 12452265 chr2R 12452332 12452355 7 89 0.0 4.0 2.0 2.3 103 chr2R 12452252 3` UTR Dyb + chr2R 12452304 3` UTR Dyb + chr2R 12452355 3` UTR Dyb + chr2R_7_12450001 chr2R_12450001 RAL-93 489 chr2R 12501701 12501717 chr2R 12503860 12503876 Rt1c 5 2161 5.5 1.0 3.2 1.2 2175 chr2R 12501701 intron fdl - chr2R 12502788 intron fdl - chr2R 12503876 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-93 490 chr2R 12501718 12501726 chr2R 12503851 12503888 Rt1c 4 2155 4.0 1.0 2.5 1.1 2170 chr2R 12501718 intron fdl - chr2R 12502803 intron fdl - chr2R 12503888 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-93 491 chr2R 12789295 12789325 chr2R 12797658 12797685 roo 6 8359 1.0 3.0 2.0 2.0 8390 chr2R 12789295 intron,3` UTR sca +,CR45137 - chr2R 12793490 intron,intron sca +,CR45137 - chr2R 12797685 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-93 492 chr2R 12897467 12897484 chr2R 12897551 12897575 8 90 1.0 1.0 1.0 4.0 108 chr2R 12897467 intron vg + chr2R 12897521 intron vg + chr2R 12897575 intron vg + chr2R_8_12895001 chr2R_12895001 RAL-93 493 chr2R 13136841 13136868 chr2R 13141639 13141665 Doc 7 4798 4.5 2.0 3.2 1.7 4824 chr2R 13136841 exon Cap-G + chr2R 13139253 intron Cap-G + chr2R 13141665 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-93 494 chr2R 13431489 13431512 chr2R 13431568 13431591 7 79 2.0 2.0 2.0 2.3 102 chr2R 13431489 intron CG42321 - chr2R 13431540 intron CG42321 - chr2R 13431591 intron CG42321 - chr2R_7_13430001 chr2R_13430001 RAL-93 495 chr2R 13439109 13439226 chr2R 13439224 13439301 6 124 0.0 0.0 0.0 6.0 192 chr2R 13439109 intergenic CG42321 -,cnn - chr2R 13439205 intergenic cnn -,CG42321 - chr2R 13439301 intergenic cnn -,CG42321 - chr2R_6_13435001 chr2R_13435001 RAL-93 496 chr2R 13566257 13566288 chr2R 13566337 13566368 10 79 1.5 0.0 0.8 5.6 111 chr2R 13566257 intergenic not near genes chr2R 13566312 intergenic not near genes chr2R 13566368 intergenic not near genes chr2R_10_13565001 chr2R_13565001 RAL-93 497 chr2R 13580500 13580531 chr2R 13580850 13580881 jockey 6 349 0.0 4.5 2.2 1.9 381 chr2R 13580500 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580881 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_6_13580001 chr2R_13580001 RAL-93 498 chr2R 13652709 13652733 chr2R 13652787 13652796 8 76 1.5 1.5 1.5 3.2 87 chr2R 13652709 intron fas + chr2R 13652752 intron fas + chr2R 13652796 intron fas + chr2R_8_13650001 chr2R_13650001 RAL-93 499 chr2R 13728140 13728164 chr2R 13735796 13735821 opus 5 7657 0.5 1.0 0.8 2.8 7681 chr2R 13728140 intron fas + chr2R 13731980 intron fas + chr2R 13735821 intron fas + chr2R_5_13730001 chr2R_13730001 RAL-93 500 chr2R 13768980 13769009 chr2R 13769078 13769107 7 98 4.0 4.0 4.0 1.4 127 chr2R 13768980 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769107 intergenic not near genes chr2R_7_13765001 chr2R_13765001 RAL-93 501 chr2R 13925871 13925886 chr2R 13926025 13926040 5 153 2.0 1.0 1.5 2.0 169 chr2R 13925871 intron shot - chr2R 13925956 intron shot - chr2R 13926040 intron shot - chr2R_5_13925001 chr2R_13925001 RAL-93 502 chr2R 14032485 14032495 chr2R 14032850 14032862 4 366 4.0 4.5 4.2 0.8 377 chr2R 14032485 intron mam + chr2R 14032674 intron mam + chr2R 14032862 intron mam + chr2R_4_14030001 chr2R_14030001 RAL-93 503 chr2R 14277583 14277610 chr2R 14277664 14277690 6 82 2.5 2.0 2.2 1.9 107 chr2R 14277583 5` UTR Ih + chr2R 14277636 5` UTR Ih + chr2R 14277690 5` UTR Ih + chr2R_6_14275001 chr2R_14275001 RAL-93 504 chr2R 14467292 14467326 chr2R 14476443 14476476 roo 20 9148 2.0 4.0 3.0 5.0 9184 chr2R 14467292 intergenic not near genes chr2R 14471884 intergenic not near genes chr2R 14476476 5` UTR CR44462 + chr2R_20_14470001 chr2R_14470001 RAL-93 505 chr2R 14497395 14497418 chr2R 14498561 14498584 1360 7 1166 2.0 3.5 2.8 1.8 1189 chr2R 14497395 3` UTR Cpsf160 - chr2R 14497990 intron Cpsf160 - chr2R 14498584 3` UTR Cpsf160 - chr2R_7_14495001 chr2R_14495001 RAL-93 506 chr2R 14530362 14530376 chr2R 14530451 14530465 4 89 5.5 2.5 4.0 0.8 103 chr2R 14530362 intron ttv + chr2R 14530414 intron ttv + chr2R 14530465 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-93 507 chr2R 14538964 14538988 chr2R 14539040 14539064 5 76 5.5 2.5 4.0 1.0 100 chr2R 14538964 intron ttv + chr2R 14539014 intron ttv + chr2R 14539064 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-93 508 chr2R 14556162 14556193 chr2R 14556241 14556272 8 79 2.5 2.5 2.5 2.3 110 chr2R 14556162 intron ttv + chr2R 14556217 intron ttv + chr2R 14556272 intron ttv + chr2R_8_14555001 chr2R_14555001 RAL-93 509 chr2R 14565570 14565575 chr2R 14565647 14565652 4 77 4.5 2.0 3.2 1.0 82 chr2R 14565570 intron ttv + chr2R 14565611 intron ttv + chr2R 14565652 intron ttv + chr2R_4_14565001 chr2R_14565001 RAL-93 510 chr2R 14610252 14610278 chr2R 14610338 14610370 10 90 4.5 5.5 5.0 1.7 118 chr2R 14610252 exon Su(var)2-HP2 - chr2R 14610311 exon Su(var)2-HP2 - chr2R 14610370 exon Su(var)2-HP2 - chr2R_10_14610001 chr2R_14610001 RAL-93 511 chr2R 14768240 14768267 chr2R 14768360 14768387 14 120 2.5 2.5 2.5 4.0 147 chr2R 14768240 5` UTR Spred - chr2R 14768314 5` UTR Spred - chr2R 14768387 intron Spred - chr2R_14_14765001 chr2R_14765001 RAL-93 512 chr2R 14792508 14792514 chr2R 14792595 14792600 5 86 5.0 0.0 2.5 1.4 92 chr2R 14792508 intron kn - chr2R 14792554 intron kn - chr2R 14792600 intron kn - chr2R_5_14790001 chr2R_14790001 RAL-93 513 chr2R 14911702 14911712 chr2R 14911825 14911835 5 123 6.5 2.5 4.5 0.9 133 chr2R 14911702 intron CG10249 - chr2R 14911768 intron CG10249 - chr2R 14911835 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-93 514 chr2R 14922142 14922170 chr2R 14922218 14922246 9 75 2.5 1.0 1.8 3.2 104 chr2R 14922142 intron CG10249 - chr2R 14922194 intron CG10249 - chr2R 14922246 intron CG10249 - chr2R_9_14920001 chr2R_14920001 RAL-93 515 chr2R 15004726 15004762 chr2R 15005055 15005091 jockey 5 329 1.0 0.0 0.5 3.3 365 chr2R 15004726 intergenic not near genes chr2R 15004908 intergenic not near genes chr2R 15005091 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-93 516 chr2R 15015460 15015490 chr2R 15022882 15022914 mdg1 8 7423 2.0 1.5 1.8 2.9 7454 chr2R 15015460 intron hbs + chr2R 15019187 intron hbs + chr2R 15022914 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-93 517 chr2R 15074798 15074827 chr2R 15075059 15075088 10 260 2.0 3.5 2.8 2.6 290 chr2R 15074798 intergenic not near genes chr2R 15074943 intergenic not near genes chr2R 15075088 intergenic not near genes chr2R_10_15070001 chr2R_15070001 RAL-93 518 chr2R 15084982 15085001 chr2R 15092031 15092050 297 4 7049 1.0 2.5 1.8 1.4 7068 chr2R 15084982 intergenic not near genes chr2R 15088516 intergenic not near genes chr2R 15092050 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-93 519 chr2R 15119333 15119345 chr2R 15127800 15127826 Tirant 4 8475 5.5 2.5 4.0 0.8 8493 chr2R 15119333 intron chn + chr2R 15123580 intron chn + chr2R 15127826 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-93 520 chr2R 15137969 15138003 chr2R 15138049 15138085 9 80 1.5 0.0 0.8 5.0 116 chr2R 15137969 intron chn + chr2R 15138027 intron chn + chr2R 15138085 intron chn + chr2R_9_15135001 chr2R_15135001 RAL-93 521 chr2R 15168277 15168301 chr2R 15168370 15168392 9 93 0.0 5.5 2.8 2.4 115 chr2R 15168277 intron igl + chr2R 15168334 intron igl + chr2R 15168392 intron igl + chr2R_9_15165001 chr2R_15165001 RAL-93 522 chr2R 15201236 15201244 chr2R 15201327 15201335 4 91 1.5 1.0 1.2 1.8 99 chr2R 15201236 intergenic CG11807 +,GPHR - chr2R 15201286 5` UTR CG11807 + chr2R 15201335 5` UTR CG11807 + chr2R_4_15200001 chr2R_15200001 RAL-93 523 chr2R 15375350 15375361 chr2R 15376167 15376178 6 817 0.0 3.0 1.5 2.4 828 chr2R 15375350 intergenic not near genes chr2R 15375764 intergenic not near genes chr2R 15376178 intergenic dup - chr2R_6_15375001 chr2R_15375001 RAL-93 524 chr2R 15561787 15561814 chr2R 15570153 15570180 12 8365 16.5 17.5 17.0 0.7 8393 chr2R 15561787 intron CG12963 + chr2R 15565984 intergenic CG8195 -,Flo1 - chr2R 15570180 intron,exon CG30466 +,Cdk5 - chr2R_12_15565001 chr2R_15565001 RAL-93 525 chr2R 15655981 15656004 chr2R 15656061 15656083 9 79 4.0 3.0 3.5 2.0 102 chr2R 15655981 intron CG42524 + chr2R 15656032 intron CG42524 + chr2R 15656083 intron CG42524 + chr2R_9_15655001 chr2R_15655001 RAL-93 526 chr2R 16094069 16094086 chr2R 16094157 16094174 4 88 1.0 1.0 1.0 2.0 105 chr2R 16094069 intron Dg - chr2R 16094122 intron Dg - chr2R 16094174 intron Dg - chr2R_4_16090001 chr2R_16090001 RAL-93 527 chr2R 16243597 16243617 chr2R 16243708 16243728 6 111 3.0 2.0 2.5 1.7 131 chr2R 16243597 3` UTR CngA - chr2R 16243662 3` UTR CngA - chr2R 16243728 3` UTR CngA - chr2R_6_16240001 chr2R_16240001 RAL-93 528 chr2R 16429262 16429282 chr2R 16429336 16429356 8 74 1.5 4.5 3.0 2.0 94 chr2R 16429262 intron Sema-2b + chr2R 16429309 intron Sema-2b + chr2R 16429356 intron Sema-2b + chr2R_8_16425001 chr2R_16425001 RAL-93 529 chr2R 16617078 16617089 chr2R 16617156 16617168 4 79 0.5 3.0 1.8 1.4 90 chr2R 16617078 intron CG5065 + chr2R 16617123 intron CG5065 + chr2R 16617168 intron CG5065 + chr2R_4_16615001 chr2R_16615001 RAL-93 530 chr2R 16722125 16722142 chr2R 16722368 16722384 6 242 3.0 5.0 4.0 1.2 259 chr2R 16722125 intron CG30463 - chr2R 16722254 intron CG30463 - chr2R 16722384 intron CG30463 - chr2R_6_16720001 chr2R_16720001 RAL-93 531 chr2R 16808731 16808766 chr2R 16808880 16808914 10 149 2.5 3.0 2.8 2.6 183 chr2R 16808731 intergenic not near genes chr2R 16808822 intergenic not near genes chr2R 16808914 intergenic not near genes chr2R_10_16805001 chr2R_16805001 RAL-93 532 chr2R 17079053 17079062 chr2R 17079135 17079144 4 82 1.0 1.0 1.0 2.0 91 chr2R 17079053 intron CG30460 - chr2R 17079098 intron CG30460 - chr2R 17079144 intron CG30460 - chr2R_4_17075001 chr2R_17075001 RAL-93 533 chr2R 17097536 17097547 chr2R 17097612 17097622 6 76 3.5 3.5 3.5 1.3 86 chr2R 17097536 intron GstS1 - chr2R 17097579 intron GstS1 - chr2R 17097622 intron GstS1 - chr2R_6_17095001 chr2R_17095001 RAL-93 534 chr2R 17147242 17147262 chr2R 17152273 17152293 jockey 7 5031 4.5 3.5 4.0 1.4 5051 chr2R 17147242 intergenic not near genes chr2R 17149768 intergenic not near genes chr2R 17152293 intergenic not near genes chr2R_7_17145001 chr2R_17145001 RAL-93 535 chr2R 17176360 17176386 chr2R 17182546 17182575 diver 6 6189 1.5 0.5 1.0 3.0 6215 chr2R 17176360 intergenic not near genes chr2R 17179468 intergenic not near genes chr2R 17182575 intergenic not near genes chr2R_6_17175001 chr2R_17175001 RAL-93 536 chr2R 17236510 17236535 chr2R 17241714 17241736 copia 12 5204 2.0 4.0 3.0 3.0 5226 chr2R 17236510 intron mbl + chr2R 17239123 intron mbl + chr2R 17241736 intron mbl + chr2R_12_17235001 chr2R_17235001 RAL-93 537 chr2R 17273098 17273125 chr2R 17273180 17273208 7 83 4.0 2.5 3.2 1.7 110 chr2R 17273098 intron mbl + chr2R 17273153 intron mbl + chr2R 17273208 intron mbl + chr2R_7_17270001 chr2R_17270001 RAL-93 538 chr2R 17479370 17479376 chr2R 17479653 17479659 5 283 18.5 15.0 16.8 0.3 289 chr2R 17479370 3` UTR,intron CG43110 -,veil + chr2R 17479514 3` UTR,intron CG43110 -,veil + chr2R 17479659 3` UTR,intron CG43110 -,veil + chr2R_5_17475001 chr2R_17475001 RAL-93 539 chr2R 17482597 17482622 chr2R 17482711 17482728 11 114 3.0 2.5 2.8 2.9 131 chr2R 17482597 intron CG43110 - chr2R 17482662 exon CG43110 - chr2R 17482728 intron CG43110 - chr2R_11_17480001 chr2R_17480001 RAL-93 540 chr2R 17627757 17627780 chr2R 17628083 17628105 8 326 3.0 6.0 4.5 1.5 348 chr2R 17627757 intron CG10936 - chr2R 17627931 intron CG10936 - chr2R 17628105 intron CG10936 - chr2R_8_17625001 chr2R_17625001 RAL-93 541 chr2R 17655205 17655218 chr2R 17655282 17655295 4 77 5.0 6.0 5.5 0.6 90 chr2R 17655205 intron CCHa1-R - chr2R 17655250 intron CCHa1-R - chr2R 17655295 intron CCHa1-R - chr2R_4_17655001 chr2R_17655001 RAL-93 542 chr2R 17655220 17655231 chr2R 17655281 17655308 5 71 3.0 6.0 4.5 0.9 88 chr2R 17655220 intron CCHa1-R - chr2R 17655264 intron CCHa1-R - chr2R 17655308 intron CCHa1-R - chr2R_5_17655001 chr2R_17655001 RAL-93 543 chr2R 17758811 17758838 chr2R 17758887 17758914 5 76 1.0 0.0 0.5 3.3 103 chr2R 17758811 intron HLH54F + chr2R 17758862 intron HLH54F + chr2R 17758914 intron HLH54F + chr2R_5_17755001 chr2R_17755001 RAL-93 544 chr2R 17784027 17784055 chr2R 17784266 17784296 pogo 7 240 1.5 3.0 2.2 2.2 269 chr2R 17784027 intergenic mir-31a - chr2R 17784162 intergenic mir-31a - chr2R 17784296 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-93 545 chr2R 18075983 18075999 chr2R 18076063 18076093 7 91 2.0 3.5 2.8 1.8 110 chr2R 18075983 intron CG34386 + chr2R 18076038 intron CG34386 + chr2R 18076093 intron CG34386 + chr2R_7_18075001 chr2R_18075001 RAL-93 546 chr2R 18127374 18127400 chr2R 18127493 18127518 7 118 2.5 4.0 3.2 1.7 144 chr2R 18127374 intron Spn55B + chr2R 18127446 intron Spn55B + chr2R 18127518 intron Spn55B + chr2R_7_18125001 chr2R_18125001 RAL-93 547 chr2R 18439608 18439631 chr2R 18439708 18439741 5 103 4.0 2.5 3.2 1.2 133 chr2R 18439608 intron CG30118 - chr2R 18439674 intron CG30118 - chr2R 18439741 exon CG30118 - chr2R_5_18435001 chr2R_18435001 RAL-93 548 chr2R 18487846 18487854 chr2R 18495315 18495324 blood 5 7469 0.0 7.0 3.5 1.1 7478 chr2R 18487846 intron CG30116 - chr2R 18491585 intron CG30116 - chr2R 18495324 intron CG30116 - chr2R_5_18490001 chr2R_18490001 RAL-93 549 chr2R 18575798 18575811 chr2R 18581986 18581997 3S18 4 6185 5.0 5.0 5.0 0.7 6199 chr2R 18575798 intron GEFmeso - chr2R 18578898 intron GEFmeso - chr2R 18581997 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-93 550 chr2R 18575815 18575830 chr2R 18581984 18582015 3S18 13 6182 2.5 5.0 3.8 2.7 6200 chr2R 18575815 intron GEFmeso - chr2R 18578915 intron GEFmeso - chr2R 18582015 intron GEFmeso - chr2R_13_18575001 chr2R_18575001 RAL-93 551 chr2R 18590867 18590898 chr2R 18600019 18600050 roo 8 9151 5.0 3.0 4.0 1.6 9183 chr2R 18590867 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600050 intron GEFmeso - chr2R_8_18595001 chr2R_18595001 RAL-93 552 chr2R 18608004 18608012 chr2R 18608120 18608123 4 115 5.0 3.5 4.2 0.8 119 chr2R 18608004 intron GEFmeso - chr2R 18608064 intron GEFmeso - chr2R 18608123 intron GEFmeso - chr2R_4_18605001 chr2R_18605001 RAL-93 553 chr2R 18678530 18678539 chr2R 18678649 18678659 5 119 1.0 1.5 1.2 2.3 129 chr2R 18678530 intergenic CG44434 -,CG44435 - chr2R 18678594 intergenic CG44434 -,CG44435 - chr2R 18678659 intergenic CG44434 -,CG44435 - chr2R_5_18675001 chr2R_18675001 RAL-93 554 chr2R 18692900 18692921 chr2R 18692987 18693008 6 86 4.5 1.0 2.8 1.6 108 chr2R 18692900 intron Sik3 + chr2R 18692954 intron Sik3 + chr2R 18693008 intron Sik3 + chr2R_6_18690001 chr2R_18690001 RAL-93 555 chr2R 18734879 18734896 chr2R 18734959 18734976 8 80 4.5 2.5 3.5 1.8 97 chr2R 18734879 intron Hs3st-A + chr2R 18734928 intron Hs3st-A + chr2R 18734976 intron Hs3st-A + chr2R_8_18730001 chr2R_18730001 RAL-93 556 chr2R 18871646 18871673 chr2R 18871731 18871757 4 85 3.5 0.0 1.8 1.4 111 chr2R 18871646 intergenic not near genes chr2R 18871702 intergenic not near genes chr2R 18871757 intergenic not near genes chr2R_4_18870001 chr2R_18870001 RAL-93 557 chr2R 18922354 18922373 chr2R 18922793 18922806 6 438 0.0 3.5 1.8 2.1 452 chr2R 18922354 intron sano + chr2R 18922580 intron sano + chr2R 18922806 intron sano + chr2R_6_18920001 chr2R_18920001 RAL-93 558 chr2R 19005691 19005710 chr2R 19005770 19005773 7 76 3.5 0.5 2.0 2.3 82 chr2R 19005691 intron tn + chr2R 19005732 intron tn + chr2R 19005773 intron tn + chr2R_7_19005001 chr2R_19005001 RAL-93 559 chr2R 19025310 19025332 chr2R 19025537 19025566 7 229 1.5 1.0 1.2 3.2 256 chr2R 19025310 intron 5-HT1B - chr2R 19025438 intron 5-HT1B - chr2R 19025566 intron 5-HT1B - chr2R_7_19025001 chr2R_19025001 RAL-93 560 chr2R 19171370 19171389 chr2R 19171573 19171592 8 202 2.0 1.0 1.5 3.2 222 chr2R 19171370 exon CG10737 + chr2R 19171481 intron CG10737 + chr2R 19171592 intron CG10737 + chr2R_8_19170001 chr2R_19170001 RAL-93 561 chr2R 19210720 19210751 chr2R 19210953 19210985 9 231 1.5 1.0 1.2 4.1 265 chr2R 19210720 intron hppy + chr2R 19210852 intron hppy + chr2R 19210985 intron hppy + chr2R_9_19210001 chr2R_19210001 RAL-93 562 chr2R 19499864 19499880 chr2R 19501053 19501071 5 1189 21.0 32.0 26.5 0.2 1207 chr2R 19499864 intron CG15120 + chr2R 19500468 3` UTR CG16926 - chr2R 19501071 5` UTR CG16926 - chr2R_5_19500001 chr2R_19500001 RAL-93 563 chr2R 19539148 19539172 chr2R 19539235 19539243 9 86 4.0 4.0 4.0 1.8 95 chr2R 19539148 intron sm - chr2R 19539196 intron sm - chr2R 19539243 intron sm - chr2R_9_19535001 chr2R_19535001 RAL-93 564 chr2R 19714703 19714730 chr2R 19714779 19714806 7 75 0.0 0.5 0.2 5.8 103 chr2R 19714703 3` UTR CG8517 + chr2R 19714754 3` UTR CG8517 + chr2R 19714806 3` UTR CG8517 + chr2R_7_19710001 chr2R_19710001 RAL-93 565 chr2R 19807673 19807700 chr2R 19807755 19807782 6 82 1.0 0.5 0.8 3.3 109 chr2R 19807673 intergenic not near genes chr2R 19807728 intergenic not near genes chr2R 19807782 intergenic not near genes chr2R_6_19805001 chr2R_19805001 RAL-93 566 chr2R 19893458 19893478 chr2R 19893560 19893577 8 102 1.0 2.0 1.5 3.2 119 chr2R 19893458 intergenic not near genes chr2R 19893518 intergenic not near genes chr2R 19893577 intergenic not near genes chr2R_8_19890001 chr2R_19890001 RAL-93 567 chr2R 19908944 19908976 chr2R 19909021 19909053 7 77 0.5 1.0 0.8 3.9 109 chr2R 19908944 intergenic not near genes chr2R 19908998 intergenic not near genes chr2R 19909053 intergenic not near genes chr2R_7_19905001 chr2R_19905001 RAL-93 568 chr2R 19957439 19957443 chr2R 19962631 19962645 copia 4 5200 4.5 2.0 3.2 1.0 5206 chr2R 19957439 intergenic CG44623 + chr2R 19960042 intergenic not near genes chr2R 19962645 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-93 569 chr2R 19957453 19957464 chr2R 19962630 19962664 copia 6 5192 1.5 2.0 1.8 2.1 5211 chr2R 19957453 intergenic CG44623 + chr2R 19960058 intergenic not near genes chr2R 19962664 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-93 570 chr2R 20069242 20069275 chr2R 20071872 20071904 opus 7 2630 1.0 3.5 2.2 2.2 2662 chr2R 20069242 intergenic not near genes chr2R 20070573 intergenic not near genes chr2R 20071904 intergenic not near genes chr2R_7_20070001 chr2R_20070001 RAL-93 571 chr2R 20196766 20196776 chr2R 20196862 20196885 7 106 1.5 0.0 0.8 3.9 119 chr2R 20196766 intergenic not near genes chr2R 20196826 intergenic not near genes chr2R 20196885 intergenic not near genes chr2R_7_20195001 chr2R_20195001 RAL-93 572 chr2R 20409055 20409086 chr2R 20409137 20409167 12 81 2.5 4.0 3.2 2.9 112 chr2R 20409055 intergenic not near genes chr2R 20409111 intergenic not near genes chr2R 20409167 intergenic not near genes chr2R_12_20405001 chr2R_20405001 RAL-93 573 chr2R 20523038 20523068 chr2R 20523149 20523179 11 109 3.0 3.5 3.2 2.6 141 chr2R 20523038 intergenic not near genes chr2R 20523108 intergenic not near genes chr2R 20523179 intergenic not near genes chr2R_11_20520001 chr2R_20520001 RAL-93 574 chr2R 20601723 20601755 chr2R 20601808 20601840 13 84 0.0 0.5 0.2 10.8 117 chr2R 20601723 intron bl + chr2R 20601782 intron bl + chr2R 20601840 intron bl + chr2R_13_20600001 chr2R_20600001 RAL-93 575 chr2R 20651142 20651174 chr2R 20651218 20651246 8 75 4.0 3.0 3.5 1.8 104 chr2R 20651142 intron Lrt + chr2R 20651194 intron Lrt + chr2R 20651246 intron Lrt + chr2R_8_20650001 chr2R_20650001 RAL-93 576 chr2R 20700045 20700080 chr2R 20700129 20700164 8 79 2.0 1.0 1.5 3.2 119 chr2R 20700045 intron dpr + chr2R 20700104 intron dpr + chr2R 20700164 intron dpr + chr2R_8_20700001 chr2R_20700001 RAL-93 577 chr2R 20739443 20739479 chr2R 20744211 20744229 F-element 8 4764 4.5 3.0 3.8 1.7 4786 chr2R 20739443 intron dpr + chr2R 20741836 intron dpr + chr2R 20744229 intron dpr + chr2R_8_20740001 chr2R_20740001 RAL-93 578 chr2R 20783313 20783332 chr2R 20788085 20788103 F-element 5 4772 0.5 5.0 2.8 1.3 4790 chr2R 20783313 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788103 intergenic CG43666 - chr2R_5_20785001 chr2R_20785001 RAL-93 579 chr2R 20800520 20800525 chr2R 20800647 20800651 4 126 3.5 0.5 2.0 1.3 131 chr2R 20800520 intergenic not near genes chr2R 20800586 intergenic not near genes chr2R 20800651 intergenic not near genes chr2R_4_20800001 chr2R_20800001 RAL-93 580 chr2R 20962905 20962936 chr2R 20963003 20963031 10 98 2.5 4.0 3.2 2.4 126 chr2R 20962905 intergenic not near genes chr2R 20962968 intergenic not near genes chr2R 20963031 intergenic not near genes chr2R_10_20960001 chr2R_20960001 RAL-93 581 chr2R 21079331 21079353 chr2R 21079402 21079425 8 74 3.0 3.5 3.2 1.9 94 chr2R 21079331 intron Treh + chr2R 21079378 intron Treh + chr2R 21079425 intron Treh + chr2R_8_21075001 chr2R_21075001 RAL-93 582 chr2R 21083167 21083196 chr2R 21083253 21083282 6 86 2.0 3.0 2.5 1.7 115 chr2R 21083167 intron Treh + chr2R 21083224 intron Treh + chr2R 21083282 intron Treh + chr2R_6_21080001 chr2R_21080001 RAL-93 583 chr2R 21103625 21103654 chr2R 21108205 21108234 9 4582 11.0 25.0 18.0 0.5 4609 chr2R 21103625 intron ktub + chr2R 21105930 intron ktub + chr2R 21108234 intron ktub + chr2R_9_21105001 chr2R_21105001 RAL-93 584 chr2R 21158894 21158901 chr2R 21159018 21159025 4 124 5.5 4.5 5.0 0.7 131 chr2R 21158894 intron CG30389 - chr2R 21158960 intron CG30389 - chr2R 21159025 intron CG30389 - chr2R_4_21155001 chr2R_21155001 RAL-93 585 chr2R 21188217 21188228 chr2R 21188298 21188309 6 81 6.5 3.0 4.8 1.0 92 chr2R 21188217 exon tud + chr2R 21188263 intron tud + chr2R 21188309 intron tud + chr2R_6_21185001 chr2R_21185001 RAL-93 586 chr2R 21247709 21247733 chr2R 21247792 21247805 7 81 2.0 1.5 1.8 2.5 96 chr2R 21247709 intron ASPP - chr2R 21247757 intron ASPP - chr2R 21247805 intron ASPP - chr2R_7_21245001 chr2R_21245001 RAL-93 587 chr2R 21262094 21262131 chr2R 21262414 21262450 11 319 1.0 2.0 1.5 4.4 356 chr2R 21262094 intron Rgk3 + chr2R 21262272 intron Rgk3 + chr2R 21262450 intron Rgk3 + chr2R_11_21260001 chr2R_21260001 RAL-93 588 chr2R 21344449 21344467 chr2R 21344534 21344553 8 85 5.5 4.0 4.8 1.4 104 chr2R 21344449 exon CG15666 + chr2R 21344501 intron CG15666 + chr2R 21344553 intron CG15666 + chr2R_8_21340001 chr2R_21340001 RAL-93 589 chr2R 21370517 21370535 chr2R 21370624 21370641 5 106 5.0 2.5 3.8 1.0 124 chr2R 21370517 intron cv-2 - chr2R 21370579 intron cv-2 - chr2R 21370641 intron cv-2 - chr2R_5_21370001 chr2R_21370001 RAL-93 590 chr2R 21491287 21491298 chr2R 21491365 21491376 4 78 1.0 5.0 3.0 1.0 89 chr2R 21491287 intron Fkbp14 - chr2R 21491332 intron Fkbp14 - chr2R 21491376 intron Fkbp14 - chr2R_4_21490001 chr2R_21490001 RAL-93 591 chr2R 21546802 21546819 chr2R 21546866 21546870 7 65 4.5 0.5 2.5 2.0 68 chr2R 21546802 intron Egfr + chr2R 21546836 intron Egfr + chr2R 21546870 intron Egfr + chr2R_7_21545001 chr2R_21545001 RAL-93 592 chr2R 21585226 21585245 chr2R 21585305 21585323 6 79 3.5 2.5 3.0 1.5 97 chr2R 21585226 3` UTR CG30222 + chr2R 21585274 3` UTR CG30222 + chr2R 21585323 3` UTR CG30222 + chr2R_6_21585001 chr2R_21585001 RAL-93 593 chr2R 21738276 21738310 chr2R 21747435 21747453 roo 5 9156 1.0 2.5 1.8 1.8 9177 chr2R 21738276 intergenic not near genes chr2R 21742864 intergenic not near genes chr2R 21747453 intergenic not near genes chr2R_5_21740001 chr2R_21740001 RAL-93 594 chr2R 21753086 21753116 chr2R 21753571 21753601 roo 8 484 3.0 4.0 3.5 1.8 515 chr2R 21753086 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753601 intergenic not near genes chr2R_8_21750001 chr2R_21750001 RAL-93 595 chr2R 21759577 21759591 chr2R 21759647 21759677 5 81 0.5 2.0 1.2 2.3 100 chr2R 21759577 intergenic not near genes chr2R 21759627 intergenic not near genes chr2R 21759677 intergenic not near genes chr2R_5_21755001 chr2R_21755001 RAL-93 596 chr2R 21787367 21787387 chr2R 21787447 21787475 4 85 0.0 1.5 0.8 2.2 108 chr2R 21787367 intergenic not near genes chr2R 21787421 intergenic not near genes chr2R 21787475 intergenic not near genes chr2R_4_21785001 chr2R_21785001 RAL-93 597 chr2R 21857346 21857369 chr2R 21857437 21857460 8 91 4.0 2.0 3.0 2.0 114 chr2R 21857346 intergenic not near genes chr2R 21857403 intergenic not near genes chr2R 21857460 intergenic not near genes chr2R_8_21855001 chr2R_21855001 RAL-93 598 chr2R 21886136 21886162 chr2R 21886215 21886241 6 79 6.5 0.0 3.2 1.4 105 chr2R 21886136 intron Fili + chr2R 21886188 intron Fili + chr2R 21886241 intron Fili + chr2R_6_21885001 chr2R_21885001 RAL-93 599 chr2R 21906270 21906301 chr2R 21906371 21906402 5 100 2.0 1.5 1.8 1.8 132 chr2R 21906270 intron Fili + chr2R 21906336 intron Fili + chr2R 21906402 intron Fili + chr2R_5_21905001 chr2R_21905001 RAL-93 600 chr2R 21919874 21919907 chr2R 21919958 21919995 7 85 2.0 1.0 1.5 2.8 121 chr2R 21919874 intron Fili + chr2R 21919934 intron Fili + chr2R 21919995 intron Fili + chr2R_7_21915001 chr2R_21915001 RAL-93 601 chr2R 21932268 21932281 chr2R 21932327 21932359 7 72 3.0 3.0 3.0 1.8 91 chr2R 21932268 intron Fili + chr2R 21932314 intron Fili + chr2R 21932359 intron Fili + chr2R_7_21930001 chr2R_21930001 RAL-93 602 chr2R 21963201 21963219 chr2R 21963285 21963304 7 85 3.0 2.5 2.8 1.8 103 chr2R 21963201 intergenic not near genes chr2R 21963252 intergenic not near genes chr2R 21963304 intergenic not near genes chr2R_7_21960001 chr2R_21960001 RAL-93 603 chr2R 22013000 22013010 chr2R 22013095 22013105 4 94 1.5 2.5 2.0 1.3 105 chr2R 22013000 intron CG34370 - chr2R 22013052 intron CG34370 - chr2R 22013105 intron CG34370 - chr2R_4_22010001 chr2R_22010001 RAL-93 604 chr2R 22035541 22035575 chr2R 22035628 22035662 8 86 1.0 2.0 1.5 3.2 121 chr2R 22035541 intron,3` UTR CG34370 -,CG9308 + chr2R 22035602 intron,3` UTR CG34370 -,CG9308 + chr2R 22035662 intron,3` UTR CG34370 -,CG9308 + chr2R_8_22035001 chr2R_22035001 RAL-93 605 chr2R 22072682 22072711 chr2R 22072767 22072796 11 85 1.5 3.0 2.2 3.4 114 chr2R 22072682 intron CG11474 - chr2R 22072739 intron CG11474 - chr2R 22072796 intron CG11474 - chr2R_11_22070001 chr2R_22070001 RAL-93 606 chr2R 22297763 22297796 chr2R 22297855 22297888 6 92 1.0 0.5 0.8 3.3 125 chr2R 22297763 intergenic wdp - chr2R 22297826 intergenic wdp - chr2R 22297888 intergenic wdp - chr2R_6_22295001 chr2R_22295001 RAL-93 607 chr2R 22349697 22349728 chr2R 22351481 22351505 jockey 8 1782 2.5 6.0 4.2 1.5 1808 chr2R 22349697 intron Liprin-gamma - chr2R 22350601 intron Liprin-gamma - chr2R 22351505 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-93 608 chr2R 22360377 22360395 chr2R 22360810 22360826 jockey 9 431 7.0 3.0 5.0 1.5 449 chr2R 22360377 intron Liprin-gamma - chr2R 22360602 intron Liprin-gamma - chr2R 22360826 intron Liprin-gamma - chr2R_9_22360001 chr2R_22360001 RAL-93 609 chr2R 22377805 22377836 chr2R 22377889 22377897 7 79 1.5 0.0 0.8 3.9 92 chr2R 22377805 3` UTR Rtf1 + chr2R 22377851 3` UTR Rtf1 + chr2R 22377897 3` UTR Rtf1 + chr2R_7_22375001 chr2R_22375001 RAL-93 610 chr2R 22460382 22460398 chr2R 22460461 22460477 9 78 1.5 1.5 1.5 3.6 95 chr2R 22460382 intron CG10384 + chr2R 22460430 intron CG10384 + chr2R 22460477 intron CG10384 + chr2R_9_22460001 chr2R_22460001 RAL-93 611 chr2R 22499851 22499884 chr2R 22499927 22499959 13 75 0.0 3.0 1.5 5.2 108 chr2R 22499851 intron px - chr2R 22499905 intron px - chr2R 22499959 intron px - chr2R_13_22495001 chr2R_22495001 RAL-93 612 chr2R 22506719 22506732 chr2R 22506797 22506810 5 78 2.0 0.0 1.0 2.5 91 chr2R 22506719 intron px - chr2R 22506764 intron px - chr2R 22506810 intron px - chr2R_5_22505001 chr2R_22505001 RAL-93 613 chr2R 22525766 22525785 chr2R 22529324 22529344 jockey 4 3559 2.5 3.5 3.0 1.0 3578 chr2R 22525766 intron px - chr2R 22527555 intron px - chr2R 22529344 intron px - chr2R_4_22525001 chr2R_22525001 RAL-93 614 chr2R 22577097 22577114 chr2R 22577174 22577192 8 79 2.5 1.5 2.0 2.7 95 chr2R 22577097 intron dnr1 - chr2R 22577144 intron dnr1 - chr2R 22577192 intron dnr1 - chr2R_8_22575001 chr2R_22575001 RAL-93 615 chr2R 22773414 22773432 chr2R 22773526 22773538 7 109 4.5 3.0 3.8 1.5 124 chr2R 22773414 intron CG42260 - chr2R 22773476 intron CG42260 - chr2R 22773538 intron CG42260 - chr2R_7_22770001 chr2R_22770001 RAL-93 616 chr2R 22773434 22773449 chr2R 22773525 22773561 4 99 2.5 2.0 2.2 1.2 127 chr2R 22773434 intron CG42260 - chr2R 22773498 intron CG42260 - chr2R 22773561 intron CG42260 - chr2R_4_22770001 chr2R_22770001 RAL-93 617 chr2R 22774961 22774988 chr2R 22775380 22775407 jockey 6 419 2.5 1.5 2.0 2.0 446 chr2R 22774961 intron CG42260 - chr2R 22775184 intron CG42260 - chr2R 22775407 intron CG42260 - chr2R_6_22775001 chr2R_22775001 RAL-93 618 chr2R 22907400 22907436 chr2R 22907493 22907528 12 92 3.0 1.5 2.2 3.8 128 chr2R 22907400 intron nahoda + chr2R 22907464 intron nahoda + chr2R 22907528 intron nahoda + chr2R_12_22905001 chr2R_22905001 RAL-93 619 chr2R 22988317 22988322 chr2R 22988398 22988402 4 81 4.5 7.5 6.0 0.6 85 chr2R 22988317 intron twi + chr2R 22988360 intron twi + chr2R 22988402 intron twi + chr2R_4_22985001 chr2R_22985001 RAL-93 620 chr2R 23052658 23052680 chr2R 23052734 23052756 7 76 0.5 3.0 1.8 2.5 98 chr2R 23052658 intergenic not near genes chr2R 23052707 intergenic not near genes chr2R 23052756 intergenic not near genes chr2R_7_23050001 chr2R_23050001 RAL-93 621 chr2R 23053997 23054032 chr2R 23054074 23054110 7 77 1.5 2.5 2.0 2.3 113 chr2R 23053997 intergenic not near genes chr2R 23054054 intergenic not near genes chr2R 23054110 intergenic not near genes chr2R_7_23050001 chr2R_23050001 RAL-93 622 chr2R 23061780 23061787 chr2R 23061874 23061880 4 93 1.5 3.0 2.2 1.2 100 chr2R 23061780 3` UTR l(2)06496 - chr2R 23061830 3` UTR l(2)06496 - chr2R 23061880 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-93 623 chr2R 23314803 23314821 chr2R 23314891 23314908 6 88 5.0 3.0 4.0 1.2 105 chr2R 23314803 intergenic not near genes chr2R 23314856 intergenic not near genes chr2R 23314908 intergenic not near genes chr2R_6_23310001 chr2R_23310001 RAL-93 624 chr2R 23315387 23315399 chr2R 23315559 23315571 5 172 2.5 4.0 3.2 1.2 184 chr2R 23315387 intergenic not near genes chr2R 23315479 intergenic not near genes chr2R 23315571 intergenic not near genes chr2R_5_23315001 chr2R_23315001 RAL-93 625 chr2R 23339514 23339530 chr2R 23339594 23339610 4 78 1.0 0.0 0.5 2.7 96 chr2R 23339514 intergenic not near genes chr2R 23339562 intergenic not near genes chr2R 23339610 intergenic not near genes chr2R_4_23335001 chr2R_23335001 RAL-93 626 chr2R 23402610 23402635 chr2R 23407684 23407711 flea 5 5076 0.5 3.5 2.0 1.7 5101 chr2R 23402610 intergenic CG3520 - chr2R 23405160 intergenic not near genes chr2R 23407711 intergenic not near genes chr2R_5_23405001 chr2R_23405001 RAL-93 627 chr2R 23423740 23423774 chr2R 23423897 23423929 10 153 0.5 0.5 0.5 6.7 189 chr2R 23423740 intron CG9815 - chr2R 23423834 intron CG9815 - chr2R 23423929 intron CG9815 - chr2R_10_23420001 chr2R_23420001 RAL-93 628 chr2R 23424863 23424886 chr2R 23424941 23424964 6 78 1.5 2.5 2.0 2.0 101 chr2R 23424863 intron CG9815 - chr2R 23424914 intron CG9815 - chr2R 23424964 intron CG9815 - chr2R_6_23420001 chr2R_23420001 RAL-93 629 chr2R 23429209 23429239 chr2R 23429434 23429462 12 224 2.5 3.5 3.0 3.0 253 chr2R 23429209 intron CG9815 - chr2R 23429336 intron CG9815 - chr2R 23429462 intron CG9815 - chr2R_12_23425001 chr2R_23425001 RAL-93 630 chr2R 23726226 23726256 chr2R 23726316 23726341 9 88 1.0 7.5 4.2 1.7 115 chr2R 23726226 intron Sesn + chr2R 23726284 intron Sesn + chr2R 23726341 intron Sesn + chr2R_9_23725001 chr2R_23725001 RAL-93 631 chr2R 23914329 23914332 chr2R 23921925 23921956 412 4 7609 2.5 3.5 3.0 1.0 7627 chr2R 23914329 exon kcc + chr2R 23918142 intron kcc + chr2R 23921956 intron kcc + chr2R_4_23915001 chr2R_23915001 RAL-93 632 chr2R 23986515 23986548 chr2R 23986595 23986628 7 80 2.5 3.5 3.0 1.8 113 chr2R 23986515 intron Phm - chr2R 23986572 intron Phm - chr2R 23986628 intron,5` UTR Phm -,CG30178 + chr2R_7_23985001 chr2R_23985001 RAL-93 633 chr2R 24031381 24031414 chr2R 24031465 24031498 9 84 1.5 0.5 1.0 4.5 117 chr2R 24031381 5` UTR CG30172 - chr2R 24031440 intergenic CG30172 -,Chi - chr2R 24031498 intergenic Chi -,CG30172 - chr2R_9_24030001 chr2R_24030001 RAL-93 634 chr2R 24147066 24147095 chr2R 24154644 24154670 412 11 7575 4.0 2.5 3.2 2.6 7604 chr2R 24147066 intron Dat + chr2R 24150868 intron Dat + chr2R 24154670 intron Dat + chr2R_11_24150001 chr2R_24150001 RAL-93 635 chr2R 24177239 24177266 chr2R 24184724 24184751 412 9 7484 0.5 2.5 1.5 3.6 7512 chr2R 24177239 3` UTR Nop60B + chr2R 24180995 intron Nop60B + chr2R 24184751 3` UTR Nop60B + chr2R_9_24180001 chr2R_24180001 RAL-93 636 chr2R 24321934 24321940 chr2R 24321992 24322021 5 65 3.5 1.0 2.2 1.6 87 chr2R 24321934 intergenic not near genes chr2R 24321978 intergenic not near genes chr2R 24322021 intergenic not near genes chr2R_5_24320001 chr2R_24320001 RAL-93 637 chr2R 24353432 24353460 chr2R 24361790 24361822 roo 11 8361 1.0 4.5 2.8 2.9 8390 chr2R 24353432 intron,intron bs +,CR44811 - chr2R 24357627 intron,intron bs +,CR44811 - chr2R 24361822 intron,intron bs +,CR44811 - chr2R_11_24355001 chr2R_24355001 RAL-93 638 chr2R 24647589 24647616 chr2R 24655145 24655172 412 9 7555 2.0 3.5 2.8 2.4 7583 chr2R 24647589 intergenic not near genes chr2R 24651380 intergenic not near genes chr2R 24655172 intergenic not near genes chr2R_9_24650001 chr2R_24650001 RAL-93 639 chr2R 24659976 24659999 chr2R 24660062 24660084 5 85 2.5 3.5 3.0 1.2 108 chr2R 24659976 intergenic not near genes chr2R 24660030 intergenic not near genes chr2R 24660084 intergenic not near genes chr2R_5_24660001 chr2R_24660001 RAL-93 640 chr2R 24719799 24719824 chr2R 24719907 24719936 4 110 4.0 2.5 3.2 1.0 137 chr2R 24719799 intron Mid1 - chr2R 24719868 intron Mid1 - chr2R 24719936 intron Mid1 - chr2R_4_24715001 chr2R_24715001 RAL-93 641 chr2R 24727883 24727912 chr2R 24735391 24735419 mdg1 9 7508 3.5 3.5 3.5 2.0 7536 chr2R 24727883 intron Mid1 - chr2R 24731651 intron Mid1 - chr2R 24735419 intron Mid1 - chr2R_9_24730001 chr2R_24730001 RAL-93 642 chr2R 24763608 24763644 chr2R 24765584 24765596 G2 13 1971 2.0 4.0 3.0 3.2 1988 chr2R 24763608 exon CG3894 + chr2R 24764602 intron CG3894 + chr2R 24765596 exon CG3894 + chr2R_13_24760001 chr2R_24760001 RAL-93 643 chr2R 24859853 24859869 chr2R 24859936 24859955 4 85 1.0 1.5 1.2 1.8 102 chr2R 24859853 5` UTR CR44829 + chr2R 24859904 5` UTR CR44829 + chr2R 24859955 5` UTR CR44829 + chr2R_4_24855001 chr2R_24855001 RAL-93 644 chr2R 25014546 25014572 chr2R 25014619 25014648 9 74 4.0 1.5 2.8 2.4 102 chr2R 25014546 intron uzip + chr2R 25014597 intron uzip + chr2R 25014648 intron uzip + chr2R_9_25010001 chr2R_25010001 RAL-93 645 chr2R 25018350 25018362 chr2R 25018451 25018462 6 101 3.5 7.0 5.2 1.0 112 chr2R 25018350 intron uzip + chr2R 25018406 intron uzip + chr2R 25018462 intron uzip + chr2R_6_25015001 chr2R_25015001 RAL-93 646 chr2R 25018366 25018376 chr2R 25018440 25018477 6 96 2.5 6.5 4.5 1.1 111 chr2R 25018366 intron uzip + chr2R 25018422 intron uzip + chr2R 25018477 intron uzip + chr2R_6_25015001 chr2R_25015001 RAL-93 647 chr2R 25034661 25034685 chr2R 25034756 25034780 11 94 3.5 4.0 3.8 2.3 119 chr2R 25034661 intron Nplp1 + chr2R 25034720 intron Nplp1 + chr2R 25034780 intron Nplp1 + chr2R_11_25030001 chr2R_25030001 RAL-93 648 chr2R 25101278 25101307 chr2R 25101380 25101409 8 102 1.0 2.0 1.5 3.2 131 chr2R 25101278 intron lov - chr2R 25101344 intron lov - chr2R 25101409 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-93 649 chr2R 25104779 25104808 chr2R 25104904 25104933 7 124 1.5 2.5 2.0 2.3 154 chr2R 25104779 intron lov - chr2R 25104856 intron lov - chr2R 25104933 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-93 650 chr2R 25122971 25122978 chr2R 25123050 25123057 5 79 1.5 0.5 1.0 2.5 86 chr2R 25122971 intron lov - chr2R 25123014 intron lov - chr2R 25123057 intron lov - chr2R_5_25120001 chr2R_25120001 RAL-93 651 chr2R 25141654 25141678 chr2R 25159343 25159368 roo 4 17689 0.0 1.5 0.8 2.2 17714 chr2R 25141654 intergenic not near genes chr2R 25150511 intergenic not near genes chr2R 25159368 intergenic not near genes chr2R_4_25150001 chr2R_25150001 RAL-93 652 chr2R 25181102 25181137 chr2R 25181199 25181234 7 97 2.0 3.0 2.5 2.0 132 chr2R 25181102 intergenic not near genes chr2R 25181168 intergenic not near genes chr2R 25181234 intergenic not near genes chr2R_7_25180001 chr2R_25180001 RAL-93 653 chr2R 25253450 25253473 chr2R 25253519 25253548 6 74 3.5 2.0 2.8 1.6 98 chr2R 25253450 intron,intron CG9380 -,CG30428 + chr2R 25253499 intron,intron CG9380 -,CG30428 + chr2R 25253548 intron,intron CG9380 -,CG30428 + chr2R_6_25250001 chr2R_25250001 RAL-93 654 chr3L 29609 29614 chr3L 29720 29740 5 118 2.0 3.0 2.5 1.4 131 chr3L 29609 intergenic not near genes chr3L 29674 intergenic not near genes chr3L 29740 intergenic not near genes chr3L_5_25001 chr3L_25001 RAL-93 655 chr3L 33170 33196 chr3L 33381 33406 4 211 1.0 2.5 1.8 1.4 236 chr3L 33170 intergenic not near genes chr3L 33288 intergenic not near genes chr3L 33406 intergenic not near genes chr3L_4_30001 chr3L_30001 RAL-93 656 chr3L 62972 63005 chr3L 63343 63377 12 371 1.0 3.5 2.2 3.8 405 chr3L 62972 intergenic not near genes chr3L 63174 intergenic not near genes chr3L 63377 intergenic not near genes chr3L_12_60001 chr3L_60001 RAL-93 657 chr3L 68985 69013 chr3L 69071 69100 10 87 1.5 3.5 2.5 2.9 115 chr3L 68985 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69100 intergenic CR44510 +,Lsp1gamma + chr3L_10_65001 chr3L_65001 RAL-93 658 chr3L 71933 71962 chr3L 72016 72045 4 76 3.0 3.5 3.2 1.0 112 chr3L 71933 intergenic CR43988 - chr3L 71989 intergenic CR43988 - chr3L 72045 intergenic CR43988 - chr3L_4_70001 chr3L_70001 RAL-93 659 chr3L 110220 110235 chr3L 119387 119402 roo 9 9167 1.0 3.5 2.2 2.8 9182 chr3L 110220 intergenic not near genes chr3L 114811 intergenic not near genes chr3L 119402 intergenic not near genes chr3L_9_110001 chr3L_110001 RAL-93 660 chr3L 296281 296311 chr3L 296363 296392 6 82 0.0 5.5 2.8 1.6 111 chr3L 296281 intron RhoGEF3 + chr3L 296336 intron RhoGEF3 + chr3L 296392 intron RhoGEF3 + chr3L_6_295001 chr3L_295001 RAL-93 661 chr3L 402692 402718 chr3L 409744 409771 297 5 7050 3.5 6.0 4.8 0.9 7079 chr3L 402692 intergenic not near genes chr3L 406232 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_5_405001 chr3L_405001 RAL-93 662 chr3L 421046 421086 chr3L 421142 421182 16 95 5.0 3.5 4.2 3.1 136 chr3L 421046 intergenic not near genes chr3L 421114 intergenic not near genes chr3L 421182 intergenic not near genes chr3L_16_420001 chr3L_420001 RAL-93 663 chr3L 456218 456239 chr3L 456296 456318 10 79 0.5 3.5 2.0 3.3 100 chr3L 456218 intron klar - chr3L 456268 intron klar - chr3L 456318 intron klar - chr3L_10_455001 chr3L_455001 RAL-93 664 chr3L 459979 460005 chr3L 460055 460080 9 77 5.0 3.0 4.0 1.8 101 chr3L 459979 intron klar - chr3L 460030 intron klar - chr3L 460080 intron klar - chr3L_9_460001 chr3L_460001 RAL-93 665 chr3L 642468 642501 chr3L 642559 642592 9 91 3.5 3.0 3.2 2.1 124 chr3L 642468 5` UTR CR43334 + chr3L 642530 5` UTR CR43334 + chr3L 642592 5` UTR CR43334 + chr3L_9_640001 chr3L_640001 RAL-93 666 chr3L 746494 746524 chr3L 746579 746609 9 84 2.0 3.0 2.5 2.6 115 chr3L 746494 intron hng3 - chr3L 746552 intron hng3 - chr3L 746609 intron hng3 - chr3L_9_745001 chr3L_745001 RAL-93 667 chr3L 789912 789947 chr3L 790397 790432 roo 11 485 0.5 2.0 1.2 5.0 520 chr3L 789912 intergenic not near genes chr3L 790172 intergenic not near genes chr3L 790432 intergenic not near genes chr3L_11_790001 chr3L_790001 RAL-93 668 chr3L 904245 904270 chr3L 904325 904352 10 81 3.0 5.5 4.2 1.9 107 chr3L 904245 intergenic CG13905 + chr3L 904298 intergenic CG13905 + chr3L 904352 intergenic not near genes chr3L_10_900001 chr3L_900001 RAL-93 669 chr3L 925179 925210 chr3L 932605 932636 mdg1 16 7425 2.5 2.0 2.2 5.0 7457 chr3L 925179 intron Glut1 + chr3L 928908 intron Glut1 + chr3L 932636 intron Glut1 + chr3L_16_925001 chr3L_925001 RAL-93 670 chr3L 933910 933934 chr3L 934012 934035 10 102 3.0 3.5 3.2 2.4 125 chr3L 933910 intron Glut1 + chr3L 933972 intron Glut1 + chr3L 934035 intron Glut1 + chr3L_10_930001 chr3L_930001 RAL-93 671 chr3L 939773 939802 chr3L 940894 940923 jockey 12 1121 4.0 4.5 4.2 2.3 1150 chr3L 939773 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940923 intron Glut1 + chr3L_12_940001 chr3L_940001 RAL-93 672 chr3L 943848 943882 chr3L 943928 943962 12 80 2.0 4.0 3.0 3.0 114 chr3L 943848 intron Glut1 + chr3L 943905 intron Glut1 + chr3L 943962 intron Glut1 + chr3L_12_940001 chr3L_940001 RAL-93 673 chr3L 949904 949921 chr3L 949987 950006 6 84 1.5 4.5 3.0 1.5 102 chr3L 949904 intron Glut1 + chr3L 949955 intron Glut1 + chr3L 950006 intron Glut1 + chr3L_6_945001 chr3L_945001 RAL-93 674 chr3L 958314 958348 chr3L 958398 958432 12 82 1.5 1.5 1.5 4.8 118 chr3L 958314 intron Glut1 + chr3L 958373 intron Glut1 + chr3L 958432 intron Glut1 + chr3L_12_955001 chr3L_955001 RAL-93 675 chr3L 1008505 1008523 chr3L 1008581 1008599 4 76 2.5 1.0 1.8 1.4 94 chr3L 1008505 intron trio - chr3L 1008552 intron trio - chr3L 1008599 intron trio - chr3L_4_1005001 chr3L_1005001 RAL-93 676 chr3L 1021592 1021630 chr3L 1021668 1021690 5 65 3.0 2.0 2.5 1.4 98 chr3L 1021592 intron trio - chr3L 1021641 intron trio - chr3L 1021690 intron trio - chr3L_5_1020001 chr3L_1020001 RAL-93 677 chr3L 1031580 1031611 chr3L 1031652 1031654 7 70 8.0 2.5 5.2 1.1 74 chr3L 1031580 intron trio - chr3L 1031617 intron trio - chr3L 1031654 intron trio - chr3L_7_1030001 chr3L_1030001 RAL-93 678 chr3L 1040557 1040578 chr3L 1040641 1040662 9 84 2.5 3.0 2.8 2.4 105 chr3L 1040557 intron bab1 - chr3L 1040610 intron bab1 - chr3L 1040662 intron bab1 - chr3L_9_1040001 chr3L_1040001 RAL-93 679 chr3L 1109632 1109659 chr3L 1109720 1109747 10 88 3.5 1.5 2.5 2.9 115 chr3L 1109632 intergenic not near genes chr3L 1109690 intergenic not near genes chr3L 1109747 intergenic not near genes chr3L_10_1105001 chr3L_1105001 RAL-93 680 chr3L 1154143 1154160 chr3L 1163293 1163308 roo 7 9149 1.0 1.5 1.2 3.2 9165 chr3L 1154143 intron bab2 - chr3L 1158726 intron bab2 - chr3L 1163308 intron bab2 - chr3L_7_1155001 chr3L_1155001 RAL-93 681 chr3L 1219595 1219619 chr3L 1227328 1227350 412 9 7732 1.0 3.5 2.2 2.8 7755 chr3L 1219595 intron mwh + chr3L 1223472 intron mwh + chr3L 1227350 intron mwh + chr3L_9_1220001 chr3L_1220001 RAL-93 682 chr3L 1315028 1315051 chr3L 1315105 1315108 4 72 23.5 29.5 26.5 0.1 80 chr3L 1315028 exon CG9153 + chr3L 1315068 exon CG9153 + chr3L 1315108 exon CG9153 + chr3L_4_1315001 chr3L_1315001 RAL-93 683 chr3L 1310983 1311008 chr3L 1315850 1315874 14 4862 31.5 34.0 32.8 0.4 4891 chr3L 1310983 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315874 exon CG9153 + chr3L_14_1310001 chr3L_1310001 RAL-93 684 chr3L 1347158 1347189 chr3L 1347242 1347250 8 81 3.5 6.5 5.0 1.3 92 chr3L 1347158 intron Ptp61F - chr3L 1347204 intron Ptp61F - chr3L 1347250 intron Ptp61F - chr3L_8_1345001 chr3L_1345001 RAL-93 685 chr3L 1357120 1357147 chr3L 1357199 1357212 10 76 4.5 1.5 3.0 2.5 92 chr3L 1357120 intron Ptp61F - chr3L 1357166 intron Ptp61F - chr3L 1357212 intron Ptp61F - chr3L_10_1355001 chr3L_1355001 RAL-93 686 chr3L 1374435 1374447 chr3L 1374506 1374512 4 69 5.5 2.5 4.0 0.8 77 chr3L 1374435 intron,intron Ptp61F -,ru + chr3L 1374474 intron,intron Ptp61F -,ru + chr3L 1374512 intron,intron Ptp61F -,ru + chr3L_4_1370001 chr3L_1370001 RAL-93 687 chr3L 1396740 1396754 chr3L 1396824 1396838 5 84 3.0 2.0 2.5 1.4 98 chr3L 1396740 intron Ptp61F - chr3L 1396789 intron Ptp61F - chr3L 1396838 intron Ptp61F - chr3L_5_1395001 chr3L_1395001 RAL-93 688 chr3L 1479982 1480018 chr3L 1480134 1480168 10 151 1.5 1.5 1.5 4.0 186 chr3L 1479982 intron stet - chr3L 1480075 intron stet - chr3L 1480168 intron stet - chr3L_10_1480001 chr3L_1480001 RAL-93 689 chr3L 1505998 1506033 chr3L 1513592 1513630 17.6 13 7594 4.0 4.0 4.0 2.6 7632 chr3L 1505998 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513630 intron,intron Psa +,cue - chr3L_13_1505001 chr3L_1505001 RAL-93 690 chr3L 1728517 1728552 chr3L 1728601 1728636 4 84 2.5 4.5 3.5 0.9 119 chr3L 1728517 intron drpr - chr3L 1728576 intron drpr - chr3L 1728636 intron drpr - chr3L_4_1725001 chr3L_1725001 RAL-93 691 chr3L 1809259 1809279 chr3L 1809344 1809364 10 85 4.5 2.0 3.2 2.4 105 chr3L 1809259 intergenic not near genes chr3L 1809312 intergenic not near genes chr3L 1809364 intergenic not near genes chr3L_10_1805001 chr3L_1805001 RAL-93 692 chr3L 1848644 1848669 chr3L 1848717 1848747 7 76 2.5 2.5 2.5 2.0 103 chr3L 1848644 intergenic not near genes chr3L 1848696 intergenic not near genes chr3L 1848747 intergenic not near genes chr3L_7_1845001 chr3L_1845001 RAL-93 693 chr3L 1991121 1991150 chr3L 1991199 1991227 9 77 3.0 1.0 2.0 3.0 106 chr3L 1991121 intergenic not near genes chr3L 1991174 intergenic not near genes chr3L 1991227 intergenic not near genes chr3L_9_1990001 chr3L_1990001 RAL-93 694 chr3L 2139205 2139234 chr3L 2139286 2139315 9 80 2.5 3.5 3.0 2.2 110 chr3L 2139205 intron zormin - chr3L 2139260 intron zormin - chr3L 2139315 intron zormin - chr3L_9_2135001 chr3L_2135001 RAL-93 695 chr3L 2168775 2168802 chr3L 2168866 2168892 7 90 2.0 2.5 2.2 2.2 117 chr3L 2168775 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168892 intron CG15879 - chr3L_7_2165001 chr3L_2165001 RAL-93 696 chr3L 2218480 2218507 chr3L 2218554 2218581 11 74 3.5 5.0 4.2 2.1 101 chr3L 2218480 intergenic not near genes chr3L 2218530 intergenic not near genes chr3L 2218581 intergenic not near genes chr3L_11_2215001 chr3L_2215001 RAL-93 697 chr3L 2279048 2279061 chr3L 2279194 2279208 9 146 0.0 5.5 2.8 2.4 160 chr3L 2279048 intergenic not near genes chr3L 2279128 intergenic not near genes chr3L 2279208 intergenic not near genes chr3L_9_2275001 chr3L_2275001 RAL-93 698 chr3L 2306286 2306313 chr3L 2306376 2306403 10 88 1.0 2.5 1.8 3.6 117 chr3L 2306286 intergenic not near genes chr3L 2306344 intergenic not near genes chr3L 2306403 intergenic not near genes chr3L_10_2305001 chr3L_2305001 RAL-93 699 chr3L 2308007 2308036 chr3L 2308112 2308131 8 104 1.0 4.5 2.8 2.1 124 chr3L 2308007 intergenic not near genes chr3L 2308069 intergenic not near genes chr3L 2308131 intergenic not near genes chr3L_8_2305001 chr3L_2305001 RAL-93 700 chr3L 2447503 2447534 chr3L 2456659 2456689 roo 10 9152 2.0 4.5 3.2 2.4 9186 chr3L 2447503 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456689 intron CG45186 + chr3L_10_2450001 chr3L_2450001 RAL-93 701 chr3L 2478879 2479032 chr3L 2478959 2479128 8 92 2.0 3.0 2.5 2.3 249 chr3L 2478879 intron CG45186 + chr3L 2479004 intron CG45186 + chr3L 2479128 intron CG45186 + chr3L_8_2475001 chr3L_2475001 RAL-93 702 chr3L 2515418 2515426 chr3L 2515500 2515508 6 82 1.5 2.5 2.0 2.0 90 chr3L 2515418 intron Spn - chr3L 2515463 intron Spn - chr3L 2515508 intron Spn - chr3L_6_2515001 chr3L_2515001 RAL-93 703 chr3L 2533657 2533667 chr3L 2533737 2533737 5 78 3.5 8.0 5.8 0.7 80 chr3L 2533657 intron Spn - chr3L 2533697 intron Spn - chr3L 2533737 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-93 704 chr3L 2533673 2533683 chr3L 2533735 2533745 4 70 2.5 5.5 4.0 0.8 72 chr3L 2533673 intron Spn - chr3L 2533709 intron Spn - chr3L 2533745 intron Spn - chr3L_4_2530001 chr3L_2530001 RAL-93 705 chr3L 2561529 2561561 chr3L 2561606 2561638 5 77 0.5 1.0 0.8 2.8 109 chr3L 2561529 intron msn - chr3L 2561584 intron msn - chr3L 2561638 intron msn - chr3L_5_2560001 chr3L_2560001 RAL-93 706 chr3L 2623389 2623398 chr3L 2623476 2623485 6 84 3.0 6.5 4.8 1.0 96 chr3L 2623389 intron Pxn - chr3L 2623437 intron Pxn - chr3L 2623485 intron Pxn - chr3L_6_2620001 chr3L_2620001 RAL-93 707 chr3L 2623399 2623409 chr3L 2623463 2623496 5 79 2.5 4.0 3.2 1.2 97 chr3L 2623399 intron Pxn - chr3L 2623448 intron Pxn - chr3L 2623496 intron Pxn - chr3L_5_2620001 chr3L_2620001 RAL-93 708 chr3L 2683947 2683978 chr3L 2684023 2684054 9 76 0.5 1.0 0.8 5.0 107 chr3L 2683947 intron Fife - chr3L 2684000 intron Fife - chr3L 2684054 intron Fife - chr3L_9_2680001 chr3L_2680001 RAL-93 709 chr3L 2697047 2697072 chr3L 2697469 2697496 7 420 5.0 3.5 4.2 1.3 449 chr3L 2697047 intron Fife - chr3L 2697272 intron Fife - chr3L 2697496 intron Fife - chr3L_7_2695001 chr3L_2695001 RAL-93 710 chr3L 2795722 2795743 chr3L 2795845 2795866 5 123 2.5 4.5 3.5 1.1 144 chr3L 2795722 intron CG43444 - chr3L 2795794 intron CG43444 - chr3L 2795866 intron CG43444 - chr3L_5_2795001 chr3L_2795001 RAL-93 711 chr3L 2854478 2854504 chr3L 2854555 2854582 5 77 1.0 2.5 1.8 1.8 104 chr3L 2854478 intron CG43444 - chr3L 2854530 intron CG43444 - chr3L 2854582 intron CG43444 - chr3L_5_2850001 chr3L_2850001 RAL-93 712 chr3L 2899578 2899606 chr3L 2899690 2899719 8 113 2.0 2.0 2.0 2.7 141 chr3L 2899578 intron Shab + chr3L 2899648 intron Shab + chr3L 2899719 intron Shab + chr3L_8_2895001 chr3L_2895001 RAL-93 713 chr3L 2904468 2904481 chr3L 2904542 2904565 5 82 3.5 2.5 3.0 1.2 97 chr3L 2904468 intron Shab + chr3L 2904516 intron Shab + chr3L 2904565 intron Shab + chr3L_5_2900001 chr3L_2900001 RAL-93 714 chr3L 2927839 2927871 chr3L 2936115 2936147 Tirant 7 8271 3.0 1.5 2.2 2.2 8308 chr3L 2927839 intron Shab + chr3L 2931993 intron Shab + chr3L 2936147 intron Shab + chr3L_7_2930001 chr3L_2930001 RAL-93 715 chr3L 3028345 3028364 chr3L 3028424 3028442 9 78 1.5 2.5 2.0 3.0 97 chr3L 3028345 intergenic not near genes chr3L 3028394 intergenic not near genes chr3L 3028442 intergenic not near genes chr3L_9_3025001 chr3L_3025001 RAL-93 716 chr3L 3100728 3100751 chr3L 3100822 3100845 7 93 2.5 1.5 2.0 2.3 117 chr3L 3100728 intron Cht7 - chr3L 3100786 intron Cht7 - chr3L 3100845 intron Cht7 - chr3L_7_3100001 chr3L_3100001 RAL-93 717 chr3L 3102817 3102848 chr3L 3102903 3102934 13 84 3.0 4.0 3.5 2.9 117 chr3L 3102817 intron Cht7 - chr3L 3102876 intron Cht7 - chr3L 3102934 intron Cht7 - chr3L_13_3100001 chr3L_3100001 RAL-93 718 chr3L 3259617 3259829 chr3L 3259712 3259929 14 96 0.0 4.5 2.2 4.4 312 chr3L 3259617 intron ckd + chr3L 3259773 intron ckd + chr3L 3259929 intron ckd + chr3L_14_3255001 chr3L_3255001 RAL-93 719 chr3L 3281444 3281464 chr3L 3281940 3281958 Doc 7 494 2.0 8.0 5.0 1.2 514 chr3L 3281444 intron CG12017 + chr3L 3281701 intron CG12017 + chr3L 3281958 intron CG12017 + chr3L_7_3280001 chr3L_3280001 RAL-93 720 chr3L 3306318 3306337 chr3L 3306678 3306697 12 359 1.5 5.5 3.5 2.7 379 chr3L 3306318 intron ZnT63C + chr3L 3306508 intron ZnT63C + chr3L 3306697 intron ZnT63C + chr3L_12_3305001 chr3L_3305001 RAL-93 721 chr3L 3475075 3475113 chr3L 3475519 3475557 jockey 17 443 1.0 2.0 1.5 6.8 482 chr3L 3475075 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475557 intron CG42324 + chr3L_17_3475001 chr3L_3475001 RAL-93 722 chr3L 3483539 3483553 chr3L 3483746 3483760 5 207 6.5 1.0 3.8 1.0 221 chr3L 3483539 intron CG42324 + chr3L 3483650 intron CG42324 + chr3L 3483760 intron CG42324 + chr3L_5_3480001 chr3L_3480001 RAL-93 723 chr3L 3484294 3484317 chr3L 3484386 3484409 5 92 0.5 4.0 2.2 1.6 115 chr3L 3484294 intron,exon CG42324 +,CG43074 - chr3L 3484352 intron,exon CG42324 +,CG43074 - chr3L 3484409 intron,intron CG42324 +,CG43074 - chr3L_5_3480001 chr3L_3480001 RAL-93 724 chr3L 3565939 3565967 chr3L 3566014 3566043 8 72 4.0 3.0 3.5 1.8 104 chr3L 3565939 intron Eip63E + chr3L 3565991 intron Eip63E + chr3L 3566043 intron Eip63E + chr3L_8_3565001 chr3L_3565001 RAL-93 725 chr3L 3577736 3577767 chr3L 3577813 3577845 7 78 2.5 3.5 3.0 1.8 109 chr3L 3577736 intron Eip63E + chr3L 3577790 intron Eip63E + chr3L 3577845 intron Eip63E + chr3L_7_3575001 chr3L_3575001 RAL-93 726 chr3L 3601297 3601330 chr3L 3606608 3606639 copia 11 5311 5.0 1.0 3.0 2.8 5342 chr3L 3601297 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606639 intron Eip63E + chr3L_11_3600001 chr3L_3600001 RAL-93 727 chr3L 3619397 3619413 chr3L 3619491 3619507 4 94 2.5 1.5 2.0 1.3 110 chr3L 3619397 intergenic not near genes chr3L 3619452 intergenic not near genes chr3L 3619507 intergenic not near genes chr3L_4_3615001 chr3L_3615001 RAL-93 728 chr3L 3695496 3695513 chr3L 3695574 3695591 5 78 4.5 0.0 2.2 1.6 95 chr3L 3695496 intergenic not near genes chr3L 3695544 intergenic not near genes chr3L 3695591 intergenic not near genes chr3L_5_3695001 chr3L_3695001 RAL-93 729 chr3L 3709459 3709466 chr3L 3709541 3709545 4 81 0.5 4.0 2.2 1.2 86 chr3L 3709459 intergenic CR45675 + chr3L 3709502 intergenic not near genes chr3L 3709545 intergenic not near genes chr3L_4_3705001 chr3L_3705001 RAL-93 730 chr3L 3763761 3763777 chr3L 3763842 3763855 9 79 1.5 0.0 0.8 5.0 94 chr3L 3763761 intron CG32264 - chr3L 3763808 intron CG32264 - chr3L 3763855 intron CG32264 - chr3L_9_3760001 chr3L_3760001 RAL-93 731 chr3L 3815054 3815080 chr3L 3815134 3815161 11 80 1.0 1.5 1.2 5.0 107 chr3L 3815054 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815108 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815161 intron,intron Scsalpha +,CR43932 - chr3L_11_3815001 chr3L_3815001 RAL-93 732 chr3L 3833742 3833766 chr3L 3833983 3834007 pogo 6 241 2.0 0.0 1.0 3.0 265 chr3L 3833742 intron enc + chr3L 3833874 intron enc + chr3L 3834007 intron enc + chr3L_6_3830001 chr3L_3830001 RAL-93 733 chr3L 3915040 3915055 chr3L 3915117 3915132 5 77 0.0 2.5 1.2 2.3 92 chr3L 3915040 intron Eip63F-1 - chr3L 3915086 intron Eip63F-1 - chr3L 3915132 intron Eip63F-1 - chr3L_5_3915001 chr3L_3915001 RAL-93 734 chr3L 3926008 3926037 chr3L 3926099 3926130 4 92 2.0 0.0 1.0 2.0 122 chr3L 3926008 intron Eip63F-1 - chr3L 3926069 intron Eip63F-1 - chr3L 3926130 intron Eip63F-1 - chr3L_4_3925001 chr3L_3925001 RAL-93 735 chr3L 4078393 4078415 chr3L 4078545 4078565 6 151 3.5 0.5 2.0 2.0 172 chr3L 4078393 intron Gad1 - chr3L 4078479 intron Gad1 - chr3L 4078565 intron Gad1 - chr3L_6_4075001 chr3L_4075001 RAL-93 736 chr3L 4121634 4121658 chr3L 4121714 4121739 7 81 2.0 2.5 2.2 2.2 105 chr3L 4121634 intron Chd64 - chr3L 4121686 intron Chd64 - chr3L 4121739 intron Chd64 - chr3L_7_4120001 chr3L_4120001 RAL-93 737 chr3L 4305168 4305193 chr3L 4305253 4305278 8 84 2.5 2.0 2.2 2.5 110 chr3L 4305168 intron dyl - chr3L 4305223 intron dyl - chr3L 4305278 intron dyl - chr3L_8_4305001 chr3L_4305001 RAL-93 738 chr3L 4397445 4397468 chr3L 4397572 4397598 7 126 1.5 3.0 2.2 2.2 153 chr3L 4397445 intron slow + chr3L 4397522 intron slow + chr3L 4397598 intron slow + chr3L_7_4395001 chr3L_4395001 RAL-93 739 chr3L 4657971 4657982 chr3L 4658429 4658444 5 460 0.5 2.0 1.2 2.3 473 chr3L 4657971 intron axo - chr3L 4658208 intron axo - chr3L 4658444 intron axo - chr3L_5_4655001 chr3L_4655001 RAL-93 740 chr3L 4726431 4726459 chr3L 4726512 4726540 9 80 5.0 3.0 4.0 1.8 109 chr3L 4726431 intron RhoGEF64C + chr3L 4726486 intron RhoGEF64C + chr3L 4726540 intron RhoGEF64C + chr3L_9_4725001 chr3L_4725001 RAL-93 741 chr3L 4837898 4837924 chr3L 4837977 4838003 5 79 0.0 2.5 1.2 2.3 105 chr3L 4837898 3` UTR CG13707 - chr3L 4837950 3` UTR CG13707 - chr3L 4838003 3` UTR CG13707 - chr3L_5_4835001 chr3L_4835001 RAL-93 742 chr3L 4858304 4858337 chr3L 4858394 4858427 10 87 2.5 3.5 3.0 2.5 123 chr3L 4858304 intergenic not near genes chr3L 4858366 intergenic not near genes chr3L 4858427 intergenic not near genes chr3L_10_4855001 chr3L_4855001 RAL-93 743 chr3L 4899689 4899713 chr3L 4899770 4899791 7 81 1.5 2.0 1.8 2.5 102 chr3L 4899689 intron CG13704 + chr3L 4899740 intron CG13704 + chr3L 4899791 intron CG13704 + chr3L_7_4895001 chr3L_4895001 RAL-93 744 chr3L 4907979 4907985 chr3L 4908054 4908061 7 76 1.5 1.5 1.5 2.8 82 chr3L 4907979 intergenic not near genes chr3L 4908020 intergenic not near genes chr3L 4908061 intergenic not near genes chr3L_7_4905001 chr3L_4905001 RAL-93 745 chr3L 4957473 4957499 chr3L 4957549 4957553 4 70 3.5 3.0 3.2 1.0 80 chr3L 4957473 intron Con - chr3L 4957513 intron Con - chr3L 4957553 intron Con - chr3L_4_4955001 chr3L_4955001 RAL-93 746 chr3L 4982557 4982562 chr3L 4982626 4982642 4 77 2.0 1.0 1.5 1.6 85 chr3L 4982557 intron Con - chr3L 4982600 intron Con - chr3L 4982642 intron Con - chr3L_4_4980001 chr3L_4980001 RAL-93 747 chr3L 5104483 5104507 chr3L 5124617 5124641 6 20134 1.5 2.5 2.0 2.0 20158 chr3L 5104483 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124641 intergenic not near genes chr3L_6_5110001 chr3L_5110001 RAL-93 748 chr3L 5212240 5212255 chr3L 5212322 5212338 4 82 5.5 4.5 5.0 0.7 98 chr3L 5212240 intron shep - chr3L 5212289 intron shep - chr3L 5212338 intron shep - chr3L_4_5210001 chr3L_5210001 RAL-93 749 chr3L 5212260 5212269 chr3L 5212321 5212328 4 71 2.0 4.5 3.2 1.0 68 chr3L 5212260 intron shep - chr3L 5212294 intron shep - chr3L 5212328 intron shep - chr3L_4_5210001 chr3L_5210001 RAL-93 750 chr3L 5361954 5361986 chr3L 5362065 5362096 5 111 0.0 0.5 0.2 4.2 142 chr3L 5361954 exon CG4769 + chr3L 5362025 intron CG4769 + chr3L 5362096 intron CG4769 + chr3L_5_5360001 chr3L_5360001 RAL-93 751 chr3L 5388202 5388220 chr3L 5388526 5388544 7 323 5.0 4.0 4.5 1.3 342 chr3L 5388202 intergenic not near genes chr3L 5388373 intergenic not near genes chr3L 5388544 intergenic not near genes chr3L_7_5385001 chr3L_5385001 RAL-93 752 chr3L 5485058 5485077 chr3L 5485139 5485159 5 82 0.5 2.5 1.5 2.0 101 chr3L 5485058 intergenic not near genes chr3L 5485108 intergenic not near genes chr3L 5485159 intergenic not near genes chr3L_5_5485001 chr3L_5485001 RAL-93 753 chr3L 5498414 5498433 chr3L 5498491 5498508 6 77 0.5 4.5 2.5 1.7 94 chr3L 5498414 exon blanks - chr3L 5498461 exon blanks - chr3L 5498508 exon blanks - chr3L_6_5495001 chr3L_5495001 RAL-93 754 chr3L 5530385 5530416 chr3L 5530469 5530503 9 85 3.5 0.5 2.0 3.0 118 chr3L 5530385 intergenic not near genes chr3L 5530444 intergenic not near genes chr3L 5530503 intergenic not near genes chr3L_9_5530001 chr3L_5530001 RAL-93 755 chr3L 5572140 5572157 chr3L 5572250 5572262 7 108 3.0 5.5 4.2 1.3 122 chr3L 5572140 intron Msr-110 - chr3L 5572201 intron Msr-110 - chr3L 5572262 intron Msr-110 - chr3L_7_5570001 chr3L_5570001 RAL-93 756 chr3L 5926316 5926351 chr3L 5926506 5926508 9 177 2.5 4.0 3.2 2.1 192 chr3L 5926316 intron Vap-33B + chr3L 5926412 intron Vap-33B + chr3L 5926508 intron Vap-33B + chr3L_9_5925001 chr3L_5925001 RAL-93 757 chr3L 5935242 5935266 chr3L 5935320 5935345 8 78 2.0 7.5 4.8 1.4 103 chr3L 5935242 intron CG33993 - chr3L 5935294 intron CG33993 - chr3L 5935345 intron CG33993 - chr3L_8_5935001 chr3L_5935001 RAL-93 758 chr3L 5966048 5966080 chr3L 5970697 5970729 9 4649 20.0 25.0 22.5 0.4 4681 chr3L 5966048 intergenic not near genes chr3L 5968388 exon CG10479 - chr3L 5970729 intron CG10479 - chr3L_9_5965001 chr3L_5965001 RAL-93 759 chr3L 6001680 6001699 chr3L 6004377 6004399 jockey 6 2699 3.5 1.5 2.5 1.7 2719 chr3L 6001680 intron PVRAP + chr3L 6003040 intron PVRAP + chr3L 6004399 intron PVRAP + chr3L_6_6000001 chr3L_6000001 RAL-93 760 chr3L 6040365 6040389 chr3L 6042721 6042745 Doc 4 2356 0.5 2.0 1.2 1.8 2380 chr3L 6040365 intergenic Jon65Aiv + chr3L 6041555 intergenic not near genes chr3L 6042745 intergenic not near genes chr3L_4_6040001 chr3L_6040001 RAL-93 761 chr3L 6063939 6063966 chr3L 6064023 6064050 7 80 0.5 2.5 1.5 2.8 111 chr3L 6063939 intergenic not near genes chr3L 6063994 intergenic not near genes chr3L 6064050 intergenic not near genes chr3L_7_6060001 chr3L_6060001 RAL-93 762 chr3L 6162362 6162378 chr3L 6162442 6162452 4 77 1.5 2.0 1.8 1.4 90 chr3L 6162362 intergenic CR45744 - chr3L 6162407 intergenic CR45744 - chr3L 6162452 intergenic CR45744 - chr3L_4_6160001 chr3L_6160001 RAL-93 763 chr3L 6191570 6191594 chr3L 6191638 6191670 8 71 2.0 3.5 2.8 2.1 100 chr3L 6191570 exon CG7386 + chr3L 6191620 exon CG7386 + chr3L 6191670 exon CG7386 + chr3L_8_6190001 chr3L_6190001 RAL-93 764 chr3L 6220914 6220941 chr3L 6230066 6230093 roo 5 9151 6.0 5.5 5.8 0.7 9179 chr3L 6220914 5` UTR pncr008:3L + chr3L 6225504 intergenic not near genes chr3L 6230093 intergenic not near genes chr3L_5_6225001 chr3L_6225001 RAL-93 765 chr3L 6338966 6338993 chr3L 6339266 6339293 6 300 3.0 1.0 2.0 2.0 327 chr3L 6338966 intron CG13300 - chr3L 6339130 intron CG13300 - chr3L 6339293 intron CG13300 - chr3L_6_6335001 chr3L_6335001 RAL-93 766 chr3L 6434553 6434572 chr3L 6434616 6434645 5 69 3.5 3.0 3.2 1.2 92 chr3L 6434553 intron CG42747 + chr3L 6434599 intron CG42747 + chr3L 6434645 intron CG42747 + chr3L_5_6430001 chr3L_6430001 RAL-93 767 chr3L 6512280 6512287 chr3L 6512360 6512370 4 84 0.0 3.0 1.5 1.6 90 chr3L 6512280 intron sfl + chr3L 6512325 intron sfl + chr3L 6512370 intron sfl + chr3L_4_6510001 chr3L_6510001 RAL-93 768 chr3L 6654187 6654211 chr3L 6654329 6654352 5 142 2.5 6.5 4.5 0.9 165 chr3L 6654187 intergenic not near genes chr3L 6654270 intergenic not near genes chr3L 6654352 intergenic not near genes chr3L_5_6650001 chr3L_6650001 RAL-93 769 chr3L 6781124 6781147 chr3L 6783136 6783160 Doc 7 2013 1.0 1.5 1.2 3.2 2036 chr3L 6781124 intergenic not near genes chr3L 6782142 intergenic not near genes chr3L 6783160 intergenic not near genes chr3L_7_6780001 chr3L_6780001 RAL-93 770 chr3L 6790471 6790482 chr3L 6790615 6790626 4 144 3.5 3.0 3.2 1.0 155 chr3L 6790471 5` UTR vvl + chr3L 6790548 5` UTR vvl + chr3L 6790626 5` UTR vvl + chr3L_4_6790001 chr3L_6790001 RAL-93 771 chr3L 6855920 6855954 chr3L 6860703 6860738 Doc 7 4783 4.0 1.0 2.5 2.0 4818 chr3L 6855920 intergenic not near genes chr3L 6858329 intergenic not near genes chr3L 6860738 intergenic not near genes chr3L_7_6855001 chr3L_6855001 RAL-93 772 chr3L 6887523 6887527 chr3L 6895007 6895019 roo 4 7490 5.0 1.0 3.0 1.0 7496 chr3L 6887523 intergenic not near genes chr3L 6891271 intergenic not near genes chr3L 6895019 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-93 773 chr3L 6974502 6974522 chr3L 6974603 6974622 9 100 0.0 4.0 2.0 3.0 120 chr3L 6974502 intron Galphai - chr3L 6974562 intron Galphai - chr3L 6974622 intron Galphai - chr3L_9_6970001 chr3L_6970001 RAL-93 774 chr3L 7112591 7112613 chr3L 7112678 7112700 5 87 2.0 3.0 2.5 1.4 109 chr3L 7112591 intron form3 + chr3L 7112646 intron form3 + chr3L 7112700 intron form3 + chr3L_5_7110001 chr3L_7110001 RAL-93 775 chr3L 7198637 7198654 chr3L 7198736 7198755 4 100 3.0 3.5 3.2 1.0 118 chr3L 7198637 intergenic not near genes chr3L 7198696 intergenic not near genes chr3L 7198755 intergenic not near genes chr3L_4_7195001 chr3L_7195001 RAL-93 776 chr3L 7285451 7285475 chr3L 7285529 7285553 9 78 0.5 4.5 2.5 2.6 102 chr3L 7285451 intron unc-13-4A - chr3L 7285502 intron unc-13-4A - chr3L 7285553 intron unc-13-4A - chr3L_9_7285001 chr3L_7285001 RAL-93 777 chr3L 7318185 7318214 chr3L 7318280 7318308 8 95 5.5 2.5 4.0 1.6 123 chr3L 7318185 intergenic not near genes chr3L 7318246 intergenic not near genes chr3L 7318308 intergenic not near genes chr3L_8_7315001 chr3L_7315001 RAL-93 778 chr3L 7358299 7358324 chr3L 7359581 7359607 6 1283 18.0 19.5 18.8 0.3 1308 chr3L 7358299 exon pst - chr3L 7358953 exon pst - chr3L 7359607 intron pst - chr3L_6_7355001 chr3L_7355001 RAL-93 779 chr3L 7375924 7375959 chr3L 7376000 7376031 6 74 3.5 1.5 2.5 1.7 107 chr3L 7375924 intron SMSr - chr3L 7375978 intron SMSr - chr3L 7376031 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-93 780 chr3L 7498761 7498781 chr3L 7503538 7503558 F-element 7 4777 4.5 1.5 3.0 1.8 4797 chr3L 7498761 5` UTR CG8539 - chr3L 7501160 intergenic not near genes chr3L 7503558 intergenic not near genes chr3L_7_7500001 chr3L_7500001 RAL-93 781 chr3L 7572285 7572307 chr3L 7572369 7572393 6 82 2.5 3.0 2.8 1.6 108 chr3L 7572285 intergenic not near genes chr3L 7572339 intergenic not near genes chr3L 7572393 intergenic not near genes chr3L_6_7570001 chr3L_7570001 RAL-93 782 chr3L 7576217 7576243 chr3L 7576301 7576325 10 86 4.5 5.0 4.8 1.7 108 chr3L 7576217 intergenic not near genes chr3L 7576271 intergenic not near genes chr3L 7576325 intergenic not near genes chr3L_10_7575001 chr3L_7575001 RAL-93 783 chr3L 7581622 7581648 chr3L 7581705 7581724 5 80 2.0 2.5 2.2 1.6 102 chr3L 7581622 intergenic not near genes chr3L 7581673 intergenic not near genes chr3L 7581724 intergenic not near genes chr3L_5_7580001 chr3L_7580001 RAL-93 784 chr3L 7591163 7591181 chr3L 7591237 7591262 5 78 2.5 2.5 2.5 1.4 99 chr3L 7591163 intergenic CG7716 - chr3L 7591212 intergenic CG7716 - chr3L 7591262 intergenic CG7716 - chr3L_5_7590001 chr3L_7590001 RAL-93 785 chr3L 7650543 7650568 chr3L 7650701 7650727 4 159 1.5 1.0 1.2 1.8 184 chr3L 7650543 intergenic CG32373 + chr3L 7650635 5` UTR CG32373 + chr3L 7650727 5` UTR CG32373 + chr3L_4_7650001 chr3L_7650001 RAL-93 786 chr3L 7749470 7749471 chr3L 11777678 11777678 6 4028208 8.0 7.5 7.8 0.7 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_9760001 chr3L_9760001 RAL-93 787 chr3L 7761448 7761458 chr3L 7761523 7761534 5 76 0.0 5.0 2.5 1.4 86 chr3L 7761448 intron Hn + chr3L 7761491 intron Hn + chr3L 7761534 intron Hn + chr3L_5_7760001 chr3L_7760001 RAL-93 788 chr3L 7793717 7793737 chr3L 7800769 7800788 297 6 7052 1.5 4.0 2.8 1.6 7071 chr3L 7793717 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800788 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-93 789 chr3L 7886523 7886547 chr3L 7889040 7889065 Stalker4 6 2517 1.5 3.0 2.2 1.9 2542 chr3L 7886523 intron CG32365 + chr3L 7887794 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-93 790 chr3L 7971845 7971878 chr3L 7971925 7971958 11 77 0.5 3.5 2.0 3.7 113 chr3L 7971845 3` UTR RNaseX25 + chr3L 7971902 3` UTR RNaseX25 + chr3L 7971958 3` UTR RNaseX25 + chr3L_11_7970001 chr3L_7970001 RAL-93 791 chr3L 7985364 7985392 chr3L 7987692 7987720 NOF 8 2328 6.0 1.5 3.8 1.7 2356 chr3L 7985364 intron nmo + chr3L 7986542 intron nmo + chr3L 7987720 intron nmo + chr3L_8_7985001 chr3L_7985001 RAL-93 792 chr3L 8009572 8009594 chr3L 8009665 8009688 8 94 0.5 2.5 1.5 3.2 116 chr3L 8009572 intron nmo + chr3L 8009630 intron nmo + chr3L 8009688 intron nmo + chr3L_8_8005001 chr3L_8005001 RAL-93 793 chr3L 8226969 8226992 chr3L 8227201 8227206 5 227 2.0 4.0 3.0 1.2 237 chr3L 8226969 intergenic not near genes chr3L 8227088 intergenic not near genes chr3L 8227206 intergenic not near genes chr3L_5_8225001 chr3L_8225001 RAL-93 794 chr3L 8481789 8481806 chr3L 8490935 8490944 roo 6 9150 1.5 5.5 3.5 1.3 9155 chr3L 8481789 intron CG43163 - chr3L 8486366 intron CG43163 - chr3L 8490944 intron CG43163 - chr3L_6_8485001 chr3L_8485001 RAL-93 795 chr3L 8551747 8551773 chr3L 8551828 8551856 9 82 3.0 1.5 2.2 2.8 109 chr3L 8551747 intron rhea + chr3L 8551802 intron rhea + chr3L 8551856 intron rhea + chr3L_9_8550001 chr3L_8550001 RAL-93 796 chr3L 8591426 8591458 chr3L 8591518 8591531 10 84 1.5 1.5 1.5 4.0 105 chr3L 8591426 intron CG43078 + chr3L 8591478 intron CG43078 + chr3L 8591531 intron CG43078 + chr3L_10_8590001 chr3L_8590001 RAL-93 797 chr3L 8784399 8784406 chr3L 8784475 8784481 4 76 2.5 5.5 4.0 0.8 82 chr3L 8784399 intron Fhos + chr3L 8784440 intron Fhos + chr3L 8784481 intron Fhos + chr3L_4_8780001 chr3L_8780001 RAL-93 798 chr3L 8784407 8784421 chr3L 8784474 8784493 9 68 1.0 5.5 3.2 2.1 86 chr3L 8784407 intron Fhos + chr3L 8784450 intron Fhos + chr3L 8784493 intron Fhos + chr3L_9_8780001 chr3L_8780001 RAL-93 799 chr3L 8791276 8791288 chr3L 8796696 8796708 I-element 4 5418 6.5 0.0 3.2 1.0 5432 chr3L 8791276 exon Fhos + chr3L 8793992 intron Fhos + chr3L 8796708 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-93 800 chr3L 8950548 8950584 chr3L 8950642 8950678 15 92 2.0 1.5 1.8 5.4 130 chr3L 8950548 intron,intron CG43783 -,orb2 - chr3L 8950613 intron,intron CG43783 -,orb2 - chr3L 8950678 intron,intron CG43783 -,orb2 - chr3L_15_8950001 chr3L_8950001 RAL-93 801 chr3L 9003948 9003974 chr3L 9004032 9004058 8 82 4.5 2.5 3.5 1.8 110 chr3L 9003948 intergenic not near genes chr3L 9004003 intergenic not near genes chr3L 9004058 intergenic not near genes chr3L_8_9000001 chr3L_9000001 RAL-93 802 chr3L 9009957 9009978 chr3L 9010061 9010082 4 104 2.0 2.5 2.2 1.2 125 chr3L 9009957 intergenic CG5194 - chr3L 9010020 intergenic CG5194 - chr3L 9010082 intergenic CG5194 - chr3L_4_9010001 chr3L_9010001 RAL-93 803 chr3L 9076932 9076952 chr3L 9084492 9084512 412 5 7560 3.5 2.5 3.0 1.2 7580 chr3L 9076932 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084512 exon Tequila + chr3L_5_9080001 chr3L_9080001 RAL-93 804 chr3L 9130559 9130581 chr3L 9134320 9134338 412 8 3760 6.5 3.0 4.8 1.4 3779 chr3L 9130559 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134338 intergenic Dhpr + chr3L_8_9130001 chr3L_9130001 RAL-93 805 chr3L 9164693 9164725 chr3L 9166160 9166192 hobo 7 1466 0.5 2.5 1.5 2.8 1499 chr3L 9164693 intron Rdl - chr3L 9165442 intron Rdl - chr3L 9166192 intron Rdl - chr3L_7_9165001 chr3L_9165001 RAL-93 806 chr3L 9219246 9219255 chr3L 9219918 9219927 jockey 5 672 7.5 4.0 5.8 0.7 681 chr3L 9219246 intergenic not near genes chr3L 9219586 intergenic not near genes chr3L 9219927 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-93 807 chr3L 9219258 9219268 chr3L 9219911 9219927 jockey 5 663 6.0 2.5 4.2 1.0 669 chr3L 9219258 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219927 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-93 808 chr3L 9270618 9270650 chr3L 9278373 9278404 roo 11 7752 1.5 1.5 1.5 4.4 7786 chr3L 9270618 intron GluRIB + chr3L 9274511 intron GluRIB + chr3L 9278404 exon GluRIB + chr3L_11_9270001 chr3L_9270001 RAL-93 809 chr3L 9415688 9415721 chr3L 9415772 9415807 5 85 1.5 1.0 1.2 2.3 119 chr3L 9415688 intron CG3967 - chr3L 9415748 intron CG3967 - chr3L 9415807 intron,3` UTR CG3967 -,CG3982 - chr3L_5_9415001 chr3L_9415001 RAL-93 810 chr3L 9419906 9419926 chr3L 9419980 9420004 6 73 4.5 1.0 2.8 1.6 98 chr3L 9419906 intron CG3967 - chr3L 9419955 intron CG3967 - chr3L 9420004 intron CG3967 - chr3L_6_9415001 chr3L_9415001 RAL-93 811 chr3L 9443520 9443540 chr3L 9445311 9445331 S-element 5 1791 1.0 2.0 1.5 2.0 1811 chr3L 9443520 intron CG33926 + chr3L 9444426 intron CG33926 + chr3L 9445331 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-93 812 chr3L 9513465 9513472 chr3L 9513529 9513555 5 78 0.5 1.0 0.8 2.8 90 chr3L 9513465 intergenic CG33702 - chr3L 9513510 intergenic CG33702 - chr3L 9513555 intergenic CG33702 - chr3L_5_9510001 chr3L_9510001 RAL-93 813 chr3L 9575914 9575937 chr3L 9580989 9580998 jockey 10 5074 2.5 2.0 2.2 3.1 5084 chr3L 9575914 intron CG42673 + chr3L 9578456 intron CG42673 + chr3L 9580998 intron CG42673 + chr3L_10_9575001 chr3L_9575001 RAL-93 814 chr3L 9689508 9689537 chr3L 9689587 9689617 7 77 1.5 4.0 2.8 1.8 109 chr3L 9689508 intron CG6767 - chr3L 9689562 intron CG6767 - chr3L 9689617 intron CG6767 - chr3L_7_9685001 chr3L_9685001 RAL-93 815 chr3L 9829049 9829069 chr3L 9829131 9829151 4 82 3.0 1.5 2.2 1.2 102 chr3L 9829049 intron CG43897 + chr3L 9829100 intron CG43897 + chr3L 9829151 intron CG43897 + chr3L_4_9825001 chr3L_9825001 RAL-93 816 chr3L 9848517 9848549 chr3L 9848593 9848625 11 75 3.0 0.0 1.5 4.4 108 chr3L 9848517 intron RasGAP1 - chr3L 9848571 intron RasGAP1 - chr3L 9848625 intron RasGAP1 - chr3L_11_9845001 chr3L_9845001 RAL-93 817 chr3L 9850566 9850597 chr3L 9850644 9850675 4 78 1.0 2.5 1.8 1.4 109 chr3L 9850566 intron RasGAP1 - chr3L 9850620 intron RasGAP1 - chr3L 9850675 intron RasGAP1 - chr3L_4_9850001 chr3L_9850001 RAL-93 818 chr3L 9871191 9871221 chr3L 9871287 9871317 9 91 2.5 1.5 2.0 3.0 126 chr3L 9871191 intergenic not near genes chr3L 9871254 intergenic not near genes chr3L 9871317 intergenic not near genes chr3L_9_9870001 chr3L_9870001 RAL-93 819 chr3L 9881385 9881407 chr3L 9881850 9881874 9 464 2.0 0.0 1.0 4.5 489 chr3L 9881385 intron CG34382 + chr3L 9881630 intron CG34382 + chr3L 9881874 intron CG34382 + chr3L_9_9880001 chr3L_9880001 RAL-93 820 chr3L 9929676 9929696 chr3L 9938453 9938476 roo 5 8777 0.0 2.0 1.0 2.5 8800 chr3L 9929676 intron CG34356 + chr3L 9934076 intron CG34356 + chr3L 9938476 intron CG34356 + chr3L_5_9930001 chr3L_9930001 RAL-93 821 chr3L 9951195 9951230 chr3L 9951282 9951317 15 87 2.0 1.5 1.8 5.4 122 chr3L 9951195 intron CG34356 + chr3L 9951256 intron CG34356 + chr3L 9951317 intron CG34356 + chr3L_15_9950001 chr3L_9950001 RAL-93 822 chr3L 9987110 9987129 chr3L 9987188 9987190 4 70 4.0 0.5 2.2 1.2 80 chr3L 9987110 intron dpr6 + chr3L 9987150 intron dpr6 + chr3L 9987190 intron dpr6 + chr3L_4_9985001 chr3L_9985001 RAL-93 823 chr3L 10004087 10004095 chr3L 10004166 10004175 5 79 3.5 0.0 1.8 1.8 88 chr3L 10004087 exon dpr6 + chr3L 10004131 intron dpr6 + chr3L 10004175 intron dpr6 + chr3L_5_10000001 chr3L_10000001 RAL-93 824 chr3L 10011586 10011623 chr3L 10011668 10011702 10 81 1.5 2.0 1.8 3.6 116 chr3L 10011586 intron dpr6 + chr3L 10011644 intron dpr6 + chr3L 10011702 intron dpr6 + chr3L_10_10010001 chr3L_10010001 RAL-93 825 chr3L 10049553 10049574 chr3L 10049632 10049654 5 80 1.5 1.5 1.5 2.0 101 chr3L 10049553 intron dpr6 + chr3L 10049604 intron dpr6 + chr3L 10049654 intron dpr6 + chr3L_5_10045001 chr3L_10045001 RAL-93 826 chr3L 10308737 10308769 chr3L 10308814 10308846 15 77 3.5 4.5 4.0 3.0 109 chr3L 10308737 intergenic not near genes chr3L 10308792 intergenic not near genes chr3L 10308846 intergenic not near genes chr3L_15_10305001 chr3L_10305001 RAL-93 827 chr3L 10372749 10372781 chr3L 10372835 10372867 6 85 10.5 11.5 11.0 0.5 118 chr3L 10372749 intergenic not near genes chr3L 10372808 intergenic not near genes chr3L 10372867 intergenic not near genes chr3L_6_10370001 chr3L_10370001 RAL-93 828 chr3L 10372730 10372742 chr3L 10374616 10374635 4 1888 10.0 19.5 14.8 0.3 1905 chr3L 10372730 intergenic not near genes chr3L 10373682 intergenic not near genes chr3L 10374635 intergenic not near genes chr3L_4_10370001 chr3L_10370001 RAL-93 829 chr3L 10414939 10414977 chr3L 10417311 10417348 Doc 16 2368 0.0 2.0 1.0 8.0 2409 chr3L 10414939 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417348 intergenic not near genes chr3L_16_10415001 chr3L_10415001 RAL-93 830 chr3L 10417576 10417600 chr3L 10417646 10417677 11 74 3.5 4.5 4.0 2.2 101 chr3L 10417576 intergenic not near genes chr3L 10417626 intergenic not near genes chr3L 10417677 intergenic not near genes chr3L_11_10415001 chr3L_10415001 RAL-93 831 chr3L 10469932 10469952 chr3L 10470008 10470028 6 76 2.0 2.0 2.0 2.0 96 chr3L 10469932 intergenic not near genes chr3L 10469980 intergenic not near genes chr3L 10470028 intergenic not near genes chr3L_6_10465001 chr3L_10465001 RAL-93 832 chr3L 10613180 10613202 chr3L 10613475 10613497 4 295 0.0 1.0 0.5 2.7 317 chr3L 10613180 intergenic not near genes chr3L 10613338 intergenic not near genes chr3L 10613497 intergenic not near genes chr3L_4_10610001 chr3L_10610001 RAL-93 833 chr3L 10621845 10621876 chr3L 10621932 10621962 4 87 1.0 1.5 1.2 1.8 117 chr3L 10621845 intergenic not near genes chr3L 10621904 intergenic not near genes chr3L 10621962 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-93 834 chr3L 10658086 10658208 chr3L 10658163 10658335 9 110 1.0 1.0 1.0 4.5 249 chr3L 10658086 intron CG32066 - chr3L 10658210 intron CG32066 - chr3L 10658335 intron CG32066 - chr3L_9_10655001 chr3L_10655001 RAL-93 835 chr3L 10705578 10705608 chr3L 10705656 10705686 8 78 1.0 3.5 2.2 2.5 108 chr3L 10705578 intergenic not near genes chr3L 10705632 intergenic not near genes chr3L 10705686 intergenic not near genes chr3L_8_10705001 chr3L_10705001 RAL-93 836 chr3L 10762841 10762860 chr3L 10762919 10762944 8 83 2.5 2.5 2.5 2.3 103 chr3L 10762841 intergenic not near genes chr3L 10762892 intergenic not near genes chr3L 10762944 intergenic not near genes chr3L_8_10760001 chr3L_10760001 RAL-93 837 chr3L 10820428 10820518 chr3L 10820520 10820666 4 106 0.0 0.0 0.0 4.0 238 chr3L 10820428 intergenic not near genes chr3L 10820547 intergenic not near genes chr3L 10820666 intergenic not near genes chr3L_4_10820001 chr3L_10820001 RAL-93 838 chr3L 10911690 10911703 chr3L 10911772 10911786 6 83 2.0 2.0 2.0 2.0 96 chr3L 10911690 intergenic not near genes chr3L 10911738 intergenic not near genes chr3L 10911786 intergenic not near genes chr3L_6_10910001 chr3L_10910001 RAL-93 839 chr3L 10997586 10997621 chr3L 10997686 10997710 4 92 0.0 2.0 1.0 2.0 124 chr3L 10997586 intron klu - chr3L 10997648 intron klu - chr3L 10997710 intron klu - chr3L_4_10995001 chr3L_10995001 RAL-93 840 chr3L 11000069 11000092 chr3L 11000143 11000156 4 70 3.5 2.5 3.0 1.0 87 chr3L 11000069 intron klu - chr3L 11000112 intron klu - chr3L 11000156 intron klu - chr3L_4_11000001 chr3L_11000001 RAL-93 841 chr3L 11087080 11087089 chr3L 11088869 11088877 S-element 6 1788 1.0 7.0 4.0 1.2 1797 chr3L 11087080 intron JIL-1 - chr3L 11087978 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_6_11085001 chr3L_11085001 RAL-93 842 chr3L 11127212 11127294 chr3L 11127289 11127371 4 77 0.0 0.0 0.0 4.0 159 chr3L 11127212 intron CG42575 + chr3L 11127292 intron CG42575 + chr3L 11127371 intron CG42575 + chr3L_4_11125001 chr3L_11125001 RAL-93 843 chr3L 11135772 11135803 chr3L 11135857 11135888 7 85 0.5 3.5 2.0 2.3 116 chr3L 11135772 intergenic CG32082 +,CG14143 + chr3L 11135830 intergenic CG32082 +,CG14143 + chr3L 11135888 intergenic CG32082 +,CG14143 + chr3L_7_11135001 chr3L_11135001 RAL-93 844 chr3L 11145544 11145554 chr3L 11145633 11145644 5 90 0.0 2.5 1.2 2.3 100 chr3L 11145544 intron CG32082 + chr3L 11145594 intron CG32082 + chr3L 11145644 intron CG32082 + chr3L_5_11145001 chr3L_11145001 RAL-93 845 chr3L 11153573 11153582 chr3L 11154030 11154052 5 464 0.0 2.5 1.2 2.3 479 chr3L 11153573 intron CG32082 + chr3L 11153812 intron CG32082 + chr3L 11154052 intron CG32082 + chr3L_5_11150001 chr3L_11150001 RAL-93 846 chr3L 11383968 11383994 chr3L 11384045 11384073 9 73 3.5 2.5 3.0 2.2 105 chr3L 11383968 3` UTR CR42755 - chr3L 11384020 3` UTR CR42755 - chr3L 11384073 3` UTR CR42755 - chr3L_9_11380001 chr3L_11380001 RAL-93 847 chr3L 11435560 11435586 chr3L 11435729 11435755 7 169 3.0 2.5 2.8 1.8 195 chr3L 11435560 intergenic CG6149 -,CR44548 + chr3L 11435658 5` UTR CR44548 + chr3L 11435755 5` UTR CR44548 + chr3L_7_11435001 chr3L_11435001 RAL-93 848 chr3L 11579570 11579583 chr3L 11579676 11579689 4 106 4.0 4.0 4.0 0.8 119 chr3L 11579570 intergenic CG43390 - chr3L 11579630 intergenic CG43390 - chr3L 11579689 intergenic CG43390 - chr3L_4_11575001 chr3L_11575001 RAL-93 849 chr3L 11587921 11587955 chr3L 11587997 11588031 6 76 2.5 1.5 2.0 2.0 110 chr3L 11587921 intergenic rt - chr3L 11587976 intergenic rt - chr3L 11588031 intergenic rt - chr3L_6_11585001 chr3L_11585001 RAL-93 850 chr3L 11588734 11588758 chr3L 11588890 11588914 9 153 2.0 3.5 2.8 2.4 180 chr3L 11588734 intergenic not near genes chr3L 11588824 intergenic not near genes chr3L 11588914 intergenic not near genes chr3L_9_11585001 chr3L_11585001 RAL-93 851 chr3L 11715541 11715572 chr3L 11715628 11715659 9 86 3.5 1.0 2.2 2.8 118 chr3L 11715541 intergenic CG14132 - chr3L 11715600 intergenic CG14132 - chr3L 11715659 intergenic CG14132 - chr3L_9_11715001 chr3L_11715001 RAL-93 852 chr3L 11723082 11723112 chr3L 11727877 11727906 Doc 6 4794 1.0 0.0 0.5 4.0 4824 chr3L 11723082 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727906 3` UTR Bmcp + chr3L_6_11725001 chr3L_11725001 RAL-93 853 chr3L 11744029 11744041 chr3L 11744136 11744149 4 108 2.5 0.0 1.2 1.8 120 chr3L 11744029 exon CG6024 - chr3L 11744089 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-93 854 chr3L 11755184 11755190 chr3L 11755263 11755269 4 79 6.5 5.5 6.0 0.6 85 chr3L 11755184 intron CG6024 - chr3L 11755226 intron CG6024 - chr3L 11755269 intron CG6024 - chr3L_4_11755001 chr3L_11755001 RAL-93 855 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 8.0 7.5 7.8 0.5 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-93 856 chr3L 11811456 11811489 chr3L 11811532 11811567 5 78 1.0 2.0 1.5 2.0 111 chr3L 11811456 intron CG42255 - chr3L 11811512 intron CG42255 - chr3L 11811567 exon CG42255 - chr3L_5_11810001 chr3L_11810001 RAL-93 857 chr3L 11864555 11864580 chr3L 11865850 11865875 pogo 7 1294 4.0 0.0 2.0 2.3 1320 chr3L 11864555 intron CG44837 - chr3L 11865215 intron CG44837 - chr3L 11865875 intron CG44837 - chr3L_7_11865001 chr3L_11865001 RAL-93 858 chr3L 11872673 11872690 chr3L 11873015 11873032 5 342 1.0 3.0 2.0 1.7 359 chr3L 11872673 intron CG44837 - chr3L 11872852 intron CG44837 - chr3L 11873032 intron CG44837 - chr3L_5_11870001 chr3L_11870001 RAL-93 859 chr3L 11905123 11905140 chr3L 11905205 11905221 5 81 2.5 3.5 3.0 1.2 98 chr3L 11905123 intron CG44837 - chr3L 11905172 intron CG44837 - chr3L 11905221 intron CG44837 - chr3L_5_11905001 chr3L_11905001 RAL-93 860 chr3L 11943496 11943520 chr3L 11943597 11943619 6 100 2.0 2.5 2.2 1.9 123 chr3L 11943496 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943619 intergenic CG5883 -,Rpt4R + chr3L_6_11940001 chr3L_11940001 RAL-93 861 chr3L 11961211 11961226 chr3L 11961292 11961302 4 88 1.5 2.0 1.8 1.4 91 chr3L 11961211 exon prc - chr3L 11961256 exon prc - chr3L 11961302 exon prc - chr3L_4_11960001 chr3L_11960001 RAL-93 862 chr3L 12013914 12013927 chr3L 12014005 12014018 4 91 3.0 3.5 3.2 1.0 104 chr3L 12013914 intron rols - chr3L 12013966 intron rols - chr3L 12014018 intron rols - chr3L_4_12010001 chr3L_12010001 RAL-93 863 chr3L 12052703 12052730 chr3L 12052798 12052825 4 94 2.0 3.5 2.8 1.1 122 chr3L 12052703 intron rols - chr3L 12052764 intron rols - chr3L 12052825 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-93 864 chr3L 12066578 12066596 chr3L 12066732 12066750 6 154 0.5 1.0 0.8 3.3 172 chr3L 12066578 intergenic not near genes chr3L 12066664 intergenic not near genes chr3L 12066750 intergenic not near genes chr3L_6_12065001 chr3L_12065001 RAL-93 865 chr3L 12089084 12089100 chr3L 12089164 12089180 6 80 1.0 3.0 2.0 2.0 96 chr3L 12089084 3` UTR CG17154 + chr3L 12089132 3` UTR CG17154 + chr3L 12089180 3` UTR CG17154 + chr3L_6_12085001 chr3L_12085001 RAL-93 866 chr3L 12300851 12300880 chr3L 12300990 12301018 9 138 0.5 3.5 2.0 3.0 167 chr3L 12300851 intergenic CR44550 + chr3L 12300934 intergenic CR44550 + chr3L 12301018 5` UTR CR44550 + chr3L_9_12300001 chr3L_12300001 RAL-93 867 chr3L 12304093 12304116 chr3L 12304167 12304192 9 76 4.0 5.5 4.8 1.6 99 chr3L 12304093 intergenic not near genes chr3L 12304142 intergenic not near genes chr3L 12304192 intergenic not near genes chr3L_9_12300001 chr3L_12300001 RAL-93 868 chr3L 12312487 12312503 chr3L 12312565 12312581 10 77 1.5 3.5 2.5 2.9 94 chr3L 12312487 intergenic not near genes chr3L 12312534 intergenic not near genes chr3L 12312581 intergenic not near genes chr3L_10_12310001 chr3L_12310001 RAL-93 869 chr3L 12362574 12362585 chr3L 12363016 12363026 5 441 4.0 8.0 6.0 0.7 452 chr3L 12362574 intergenic not near genes chr3L 12362800 intergenic not near genes chr3L 12363026 intergenic not near genes chr3L_5_12360001 chr3L_12360001 RAL-93 870 chr3L 12476288 12476324 chr3L 12476365 12476399 5 76 1.0 3.5 2.2 1.6 111 chr3L 12476288 intron CG10663 - chr3L 12476344 intron CG10663 - chr3L 12476399 intron CG10663 - chr3L_5_12475001 chr3L_12475001 RAL-93 871 chr3L 12565357 12565387 chr3L 12565471 12565501 14 110 2.5 2.5 2.5 4.0 144 chr3L 12565357 intron sowah - chr3L 12565429 intron sowah - chr3L 12565501 intron sowah - chr3L_14_12565001 chr3L_12565001 RAL-93 872 chr3L 12578047 12578064 chr3L 12578134 12578152 5 88 1.0 1.0 1.0 2.5 105 chr3L 12578047 intergenic not near genes chr3L 12578100 intergenic not near genes chr3L 12578152 intergenic not near genes chr3L_5_12575001 chr3L_12575001 RAL-93 873 chr3L 12675659 12675686 chr3L 12675756 12675784 16 97 2.0 2.5 2.2 5.0 125 chr3L 12675659 intergenic not near genes chr3L 12675722 intergenic not near genes chr3L 12675784 intergenic not near genes chr3L_16_12675001 chr3L_12675001 RAL-93 874 chr3L 12799831 12799836 chr3L 12799939 12799944 4 108 1.0 2.5 1.8 1.4 113 chr3L 12799831 intron Atg1 - chr3L 12799888 intron Atg1 - chr3L 12799944 intron Atg1 - chr3L_4_12795001 chr3L_12795001 RAL-93 875 chr3L 12874941 12874963 chr3L 12877233 12877255 jockey 6 2292 1.5 0.5 1.0 3.0 2314 chr3L 12874941 intergenic not near genes chr3L 12876098 intergenic not near genes chr3L 12877255 intergenic not near genes chr3L_6_12875001 chr3L_12875001 RAL-93 876 chr3L 12919282 12919297 chr3L 12924766 12924778 Rt1c 5 5482 6.5 1.0 3.8 1.0 5496 chr3L 12919282 intergenic not near genes chr3L 12922030 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_5_12920001 chr3L_12920001 RAL-93 877 chr3L 12929731 12929741 chr3L 12930047 12930057 6 316 0.0 4.0 2.0 2.0 326 chr3L 12929731 intergenic not near genes chr3L 12929894 intergenic not near genes chr3L 12930057 intergenic not near genes chr3L_6_12925001 chr3L_12925001 RAL-93 878 chr3L 12977760 12977777 chr3L 12977861 12977880 5 103 1.0 3.0 2.0 1.7 120 chr3L 12977760 intergenic not near genes chr3L 12977820 intergenic not near genes chr3L 12977880 intergenic not near genes chr3L_5_12975001 chr3L_12975001 RAL-93 879 chr3L 13070713 13070747 chr3L 13070812 13070844 14 98 3.0 3.0 3.0 3.5 131 chr3L 13070713 intergenic not near genes chr3L 13070778 intergenic not near genes chr3L 13070844 intergenic not near genes chr3L_14_13070001 chr3L_13070001 RAL-93 880 chr3L 13123171 13123191 chr3L 13123261 13123281 10 90 1.0 4.0 2.5 2.9 110 chr3L 13123171 intergenic not near genes chr3L 13123226 intergenic not near genes chr3L 13123281 intergenic not near genes chr3L_10_13120001 chr3L_13120001 RAL-93 881 chr3L 13241191 13241211 chr3L 13241272 13241295 4 84 0.5 0.5 0.5 2.7 104 chr3L 13241191 intron caps + chr3L 13241243 intron caps + chr3L 13241295 intron caps + chr3L_4_13240001 chr3L_13240001 RAL-93 882 chr3L 13245096 13245118 chr3L 13245228 13245250 11 132 3.0 4.0 3.5 2.4 154 chr3L 13245096 intron caps + chr3L 13245173 intron caps + chr3L 13245250 intron caps + chr3L_11_13245001 chr3L_13245001 RAL-93 883 chr3L 13452535 13452681 chr3L 13452668 13452769 4 99 0.0 0.0 0.0 4.0 234 chr3L 13452535 intron CG10738 + chr3L 13452652 intron CG10738 + chr3L 13452769 intron CG10738 + chr3L_4_13450001 chr3L_13450001 RAL-93 884 chr3L 13525155 13525189 chr3L 13532950 13532985 roo 9 7795 2.0 1.5 1.8 3.2 7830 chr3L 13525155 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532985 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-93 885 chr3L 13535906 13535937 chr3L 13535982 13536013 6 76 0.5 0.0 0.2 5.0 107 chr3L 13535906 intergenic not near genes chr3L 13535960 intergenic not near genes chr3L 13536013 intergenic not near genes chr3L_6_13535001 chr3L_13535001 RAL-93 886 chr3L 13673305 13673325 chr3L 13673453 13673481 9 150 4.0 4.5 4.2 1.7 176 chr3L 13673305 intron bru-3 - chr3L 13673393 intron bru-3 - chr3L 13673481 intron bru-3 - chr3L_9_13670001 chr3L_13670001 RAL-93 887 chr3L 13680200 13680217 chr3L 13680390 13680404 8 189 1.0 2.0 1.5 3.2 204 chr3L 13680200 intron bru-3 - chr3L 13680302 intron bru-3 - chr3L 13680404 intron bru-3 - chr3L_8_13680001 chr3L_13680001 RAL-93 888 chr3L 13740031 13740043 chr3L 13740124 13740135 4 92 3.5 4.5 4.0 0.8 104 chr3L 13740031 intron bru-3 - chr3L 13740083 intron bru-3 - chr3L 13740135 intron bru-3 - chr3L_4_13740001 chr3L_13740001 RAL-93 889 chr3L 13804544 13804576 chr3L 13822829 13822862 roo 4 18284 2.0 1.0 1.5 1.6 18318 chr3L 13804544 intergenic not near genes chr3L 13813703 intergenic not near genes chr3L 13822862 intergenic not near genes chr3L_4_13810001 chr3L_13810001 RAL-93 890 chr3L 13842086 13842099 chr3L 13842198 13842211 5 112 2.5 4.5 3.5 1.1 125 chr3L 13842086 exon CG8757 - chr3L 13842148 exon CG8757 - chr3L 13842211 5` UTR CG8757 - chr3L_5_13840001 chr3L_13840001 RAL-93 891 chr3L 14061669 14061674 chr3L 14061758 14061763 4 89 3.0 0.0 1.5 1.6 94 chr3L 14061669 intron CG32138 + chr3L 14061716 intron CG32138 + chr3L 14061763 intron CG32138 + chr3L_4_14060001 chr3L_14060001 RAL-93 892 chr3L 14076292 14076313 chr3L 14076370 14076391 5 77 0.0 1.0 0.5 3.3 99 chr3L 14076292 intron btl + chr3L 14076342 intron btl + chr3L 14076391 intron btl + chr3L_5_14075001 chr3L_14075001 RAL-93 893 chr3L 14185175 14185181 chr3L 14185251 14185253 4 75 3.0 4.0 3.5 0.9 78 chr3L 14185175 intergenic not near genes chr3L 14185214 intergenic not near genes chr3L 14185253 intergenic not near genes chr3L_4_14185001 chr3L_14185001 RAL-93 894 chr3L 14245569 14245593 chr3L 14245663 14245687 1360 4 94 6.0 1.0 3.5 0.9 118 chr3L 14245569 3` UTR CR44561 - chr3L 14245628 3` UTR CR44561 - chr3L 14245687 3` UTR CR44561 - chr3L_4_14245001 chr3L_14245001 RAL-93 895 chr3L 14295986 14296014 chr3L 14296466 14296483 roo 9 482 7.5 2.0 4.8 1.6 497 chr3L 14295986 intron fz + chr3L 14296234 intron fz + chr3L 14296483 intron fz + chr3L_9_14295001 chr3L_14295001 RAL-93 896 chr3L 14312037 14312056 chr3L 14316851 14316870 X-element 5 4812 0.5 3.0 1.8 1.8 4833 chr3L 14312037 exon fz + chr3L 14314454 intron fz + chr3L 14316870 intron fz + chr3L_5_14310001 chr3L_14310001 RAL-93 897 chr3L 14356519 14356553 chr3L 14356599 14356633 16 79 0.5 3.0 1.8 5.7 114 chr3L 14356519 intron fz + chr3L 14356576 intron fz + chr3L 14356633 intron fz + chr3L_16_14355001 chr3L_14355001 RAL-93 898 chr3L 14399177 14399193 chr3L 14399266 14399282 5 89 1.5 0.0 0.8 2.8 105 chr3L 14399177 intergenic not near genes chr3L 14399230 intergenic not near genes chr3L 14399282 intergenic not near genes chr3L_5_14395001 chr3L_14395001 RAL-93 899 chr3L 14417904 14417934 chr3L 14417980 14418010 6 76 1.5 4.0 2.8 1.6 106 chr3L 14417904 intron bbg - chr3L 14417957 intron bbg - chr3L 14418010 intron bbg - chr3L_6_14415001 chr3L_14415001 RAL-93 900 chr3L 14468446 14468472 chr3L 14473652 14473678 copia 4 5206 4.0 2.5 3.2 1.0 5232 chr3L 14468446 intron bbg - chr3L 14471062 intron bbg - chr3L 14473678 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-93 901 chr3L 14522055 14522080 chr3L 14522142 14522167 5 87 1.5 1.5 1.5 2.0 112 chr3L 14522055 intron bbg - chr3L 14522111 intron bbg - chr3L 14522167 intron bbg - chr3L_5_14520001 chr3L_14520001 RAL-93 902 chr3L 14585617 14585639 chr3L 14585693 14585717 6 77 2.5 2.5 2.5 1.7 100 chr3L 14585617 intron HGTX - chr3L 14585667 intron HGTX - chr3L 14585717 intron HGTX - chr3L_6_14585001 chr3L_14585001 RAL-93 903 chr3L 14589514 14589550 chr3L 14589605 14589642 15 92 4.5 5.0 4.8 2.6 128 chr3L 14589514 intron HGTX - chr3L 14589578 intron HGTX - chr3L 14589642 intron HGTX - chr3L_15_14585001 chr3L_14585001 RAL-93 904 chr3L 14893659 14893688 chr3L 14893744 14893771 7 84 2.0 4.5 3.2 1.7 112 chr3L 14893659 intergenic CG34245 - chr3L 14893715 intergenic CG34245 - chr3L 14893771 3` UTR CG34245 - chr3L_7_14890001 chr3L_14890001 RAL-93 905 chr3L 14913902 14913928 chr3L 14913979 14914005 5 76 2.0 1.5 1.8 1.8 103 chr3L 14913902 intron DCX-EMAP + chr3L 14913954 intron DCX-EMAP + chr3L 14914005 intron DCX-EMAP + chr3L_5_14910001 chr3L_14910001 RAL-93 906 chr3L 14962292 14962304 chr3L 14962372 14962384 4 80 4.5 4.5 4.5 0.7 92 chr3L 14962292 intergenic not near genes chr3L 14962338 intergenic not near genes chr3L 14962384 intergenic not near genes chr3L_4_14960001 chr3L_14960001 RAL-93 907 chr3L 15165030 15165045 chr3L 15165129 15165144 4 99 0.0 0.0 0.0 4.0 114 chr3L 15165030 intergenic not near genes chr3L 15165087 intergenic not near genes chr3L 15165144 intergenic not near genes chr3L_4_15165001 chr3L_15165001 RAL-93 908 chr3L 15232517 15232525 chr3L 15232599 15232606 4 81 1.0 1.0 1.0 2.0 89 chr3L 15232517 intergenic not near genes chr3L 15232562 intergenic not near genes chr3L 15232606 intergenic not near genes chr3L_4_15230001 chr3L_15230001 RAL-93 909 chr3L 15391120 15391141 chr3L 15391238 15391256 7 117 2.5 0.0 1.2 3.2 136 chr3L 15391120 intergenic not near genes chr3L 15391188 intergenic not near genes chr3L 15391256 intergenic not near genes chr3L_7_15390001 chr3L_15390001 RAL-93 910 chr3L 15423765 15423784 chr3L 15426609 15426628 opus 6 2844 2.0 2.5 2.2 1.9 2863 chr3L 15423765 intergenic not near genes chr3L 15425196 intergenic not near genes chr3L 15426628 intergenic not near genes chr3L_6_15425001 chr3L_15425001 RAL-93 911 chr3L 15444656 15444680 chr3L 15444746 15444773 12 92 3.5 2.5 3.0 3.0 117 chr3L 15444656 intergenic not near genes chr3L 15444714 intergenic not near genes chr3L 15444773 intergenic not near genes chr3L_12_15440001 chr3L_15440001 RAL-93 912 chr3L 15541617 15541636 chr3L 15541708 15541726 6 91 6.0 1.0 3.5 1.3 109 chr3L 15541617 intron CrebA + chr3L 15541672 intron CrebA + chr3L 15541726 intron CrebA + chr3L_6_15540001 chr3L_15540001 RAL-93 913 chr3L 15550659 15550688 chr3L 15554102 15554132 5 3444 17.5 17.5 17.5 0.3 3473 chr3L 15550659 intron CrebA + chr3L 15552396 3` UTR CrebA + chr3L 15554132 5` UTR AGO2 + chr3L_5_15550001 chr3L_15550001 RAL-93 914 chr3L 15633186 15633215 chr3L 15633265 15633294 6 80 1.0 0.0 0.5 4.0 108 chr3L 15633186 intron comm3 - chr3L 15633240 intron comm3 - chr3L 15633294 intron comm3 - chr3L_6_15630001 chr3L_15630001 RAL-93 915 chr3L 15732134 15732137 chr3L 15732215 15732218 4 81 4.0 0.0 2.0 1.3 84 chr3L 15732134 intergenic not near genes chr3L 15732176 intergenic not near genes chr3L 15732218 intergenic not near genes chr3L_4_15730001 chr3L_15730001 RAL-93 916 chr3L 15756885 15756912 chr3L 15756968 15756995 4 79 3.0 0.5 1.8 1.4 110 chr3L 15756885 intergenic not near genes chr3L 15756940 intergenic not near genes chr3L 15756995 intergenic not near genes chr3L_4_15755001 chr3L_15755001 RAL-93 917 chr3L 15883189 15883225 chr3L 15883482 15883518 5 285 0.5 2.0 1.2 2.3 329 chr3L 15883189 intron pHCl - chr3L 15883354 intron pHCl - chr3L 15883518 intron pHCl - chr3L_5_15880001 chr3L_15880001 RAL-93 918 chr3L 15899228 15899260 chr3L 15899788 15899796 jockey 9 545 1.0 1.5 1.2 4.1 568 chr3L 15899228 intergenic pHCl - chr3L 15899512 intergenic pHCl - chr3L 15899796 intergenic sff - chr3L_9_15895001 chr3L_15895001 RAL-93 919 chr3L 15916850 15916861 chr3L 15916927 15916932 6 76 1.5 2.0 1.8 2.1 82 chr3L 15916850 intron sff - chr3L 15916891 intron sff - chr3L 15916932 intron sff - chr3L_6_15915001 chr3L_15915001 RAL-93 920 chr3L 16184105 16184138 chr3L 16188924 16188957 X-element 10 4817 0.0 2.0 1.0 5.0 4852 chr3L 16184105 intergenic not near genes chr3L 16186531 intergenic not near genes chr3L 16188957 intergenic not near genes chr3L_10_16185001 chr3L_16185001 RAL-93 921 chr3L 16217012 16217029 chr3L 16217095 16217114 4 85 1.0 3.0 2.0 1.3 102 chr3L 16217012 intron CG13073 - chr3L 16217063 intron CG13073 - chr3L 16217114 5` UTR CG13073 - chr3L_4_16215001 chr3L_16215001 RAL-93 922 chr3L 16258390 16258414 chr3L 16258472 16258494 7 84 7.0 0.5 3.8 1.5 104 chr3L 16258390 intergenic not near genes chr3L 16258442 intergenic not near genes chr3L 16258494 intergenic not near genes chr3L_7_16255001 chr3L_16255001 RAL-93 923 chr3L 16443848 16443878 chr3L 16446188 16446215 Doc 9 2337 2.0 2.5 2.2 2.8 2367 chr3L 16443848 intron,intron CG33158 +,dsx-c73A - chr3L 16445032 intron,intron CG33158 +,dsx-c73A - chr3L 16446215 intron,intron CG33158 +,dsx-c73A - chr3L_9_16445001 chr3L_16445001 RAL-93 924 chr3L 16457531 16457558 chr3L 16457626 16457653 7 95 0.5 2.5 1.5 2.8 122 chr3L 16457531 intron CG33158 + chr3L 16457592 intron CG33158 + chr3L 16457653 intron CG33158 + chr3L_7_16455001 chr3L_16455001 RAL-93 925 chr3L 16493975 16494011 chr3L 16494491 16494528 jockey 9 517 3.5 4.0 3.8 1.9 553 chr3L 16493975 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494528 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_9_16490001 chr3L_16490001 RAL-93 926 chr3L 16506667 16506686 chr3L 16506860 16506878 8 192 2.5 2.0 2.2 2.5 211 chr3L 16506667 intron CG43373 - chr3L 16506772 intron CG43373 - chr3L 16506878 intron CG43373 - chr3L_8_16505001 chr3L_16505001 RAL-93 927 chr3L 16540057 16540088 chr3L 16540145 16540176 5 87 0.5 2.5 1.5 2.0 119 chr3L 16540057 intron CG43373 - chr3L 16540116 intron CG43373 - chr3L 16540176 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-93 928 chr3L 16610702 16610717 chr3L 16610787 16610801 6 85 0.5 6.0 3.2 1.4 99 chr3L 16610702 3` UTR Su(P) - chr3L 16610752 exon Su(P) - chr3L 16610801 exon Su(P) - chr3L_6_16610001 chr3L_16610001 RAL-93 929 chr3L 16616508 16616533 chr3L 16621836 16621861 297 5 5328 2.0 2.0 2.0 1.7 5353 chr3L 16616508 3` UTR Abl - chr3L 16619184 3` UTR Abl - chr3L 16621861 3` UTR Abl - chr3L_5_16615001 chr3L_16615001 RAL-93 930 chr3L 16632233 16632260 chr3L 16632416 16632443 4 183 11.5 0.5 6.0 0.6 210 chr3L 16632233 intron Abl - chr3L 16632338 intron Abl - chr3L 16632443 intron Abl - chr3L_4_16630001 chr3L_16630001 RAL-93 931 chr3L 16652679 16652716 chr3L 16652758 16652795 10 79 1.5 2.0 1.8 3.6 116 chr3L 16652679 intron Baldspot - chr3L 16652737 intron Baldspot - chr3L 16652795 intron Baldspot - chr3L_10_16650001 chr3L_16650001 RAL-93 932 chr3L 16749211 16749232 chr3L 16749301 16749322 5 90 2.0 2.0 2.0 1.7 111 chr3L 16749211 intergenic not near genes chr3L 16749266 intergenic not near genes chr3L 16749322 intergenic not near genes chr3L_5_16745001 chr3L_16745001 RAL-93 933 chr3L 16786973 16786999 chr3L 16787049 16787066 5 74 0.5 3.5 2.0 1.7 93 chr3L 16786973 intergenic Int6 - chr3L 16787020 intergenic Int6 - chr3L 16787066 intergenic Int6 - chr3L_5_16785001 chr3L_16785001 RAL-93 934 chr3L 16802439 16802450 chr3L 16803625 16803636 6 1186 23.0 26.5 24.8 0.2 1197 chr3L 16802439 intron CG9674 - chr3L 16803038 intron CG9674 - chr3L 16803636 intron CG9674 - chr3L_6_16800001 chr3L_16800001 RAL-93 935 chr3L 16807785 16808069 chr3L 16807864 16808145 12 78 1.5 1.5 1.5 4.8 360 chr3L 16807785 intron nudC + chr3L 16807965 intron nudC + chr3L 16808145 intron nudC + chr3L_12_16805001 chr3L_16805001 RAL-93 936 chr3L 16814105 16814115 chr3L 16814506 16814517 6 402 2.0 3.0 2.5 1.7 412 chr3L 16814105 intron,intron nudC +,CG13024 - chr3L 16814311 intron,intron nudC +,CG13024 - chr3L 16814517 intron,intron nudC +,CG13024 - chr3L_6_16810001 chr3L_16810001 RAL-93 937 chr3L 16945727 16945759 chr3L 16954880 16954912 roo 10 9150 6.0 1.0 3.5 2.2 9185 chr3L 16945727 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954912 5` UTR Nc73EF + chr3L_10_16950001 chr3L_16950001 RAL-93 938 chr3L 17026796 17026823 chr3L 17026877 17026891 6 78 1.5 0.5 1.0 3.0 95 chr3L 17026796 exon Fit2 + chr3L 17026844 3` UTR Fit2 + chr3L 17026891 3` UTR Fit2 + chr3L_6_17025001 chr3L_17025001 RAL-93 939 chr3L 17085007 17085035 chr3L 17094153 17094184 roo 7 9149 2.0 1.0 1.5 2.8 9177 chr3L 17085007 intron Rbp6 - chr3L 17089596 intron Rbp6 - chr3L 17094184 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-93 940 chr3L 17117115 17117130 chr3L 17117200 17117215 4 85 1.0 5.0 3.0 1.0 100 chr3L 17117115 intron Rbp6 - chr3L 17117165 intron Rbp6 - chr3L 17117215 intron Rbp6 - chr3L_4_17115001 chr3L_17115001 RAL-93 941 chr3L 17149164 17149184 chr3L 17149245 17149265 7 81 2.0 0.0 1.0 3.5 101 chr3L 17149164 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149265 intron Rbp6 - chr3L_7_17145001 chr3L_17145001 RAL-93 942 chr3L 17256519 17256547 chr3L 17256650 17256660 8 128 4.5 2.5 3.5 1.8 141 chr3L 17256519 intron CR43870 + chr3L 17256590 intron CR43870 + chr3L 17256660 intron CR43870 + chr3L_8_17255001 chr3L_17255001 RAL-93 943 chr3L 17272241 17272265 chr3L 17272374 17272398 8 133 1.0 1.5 1.2 3.6 157 chr3L 17272241 intergenic not near genes chr3L 17272320 intergenic not near genes chr3L 17272398 intergenic not near genes chr3L_8_17270001 chr3L_17270001 RAL-93 944 chr3L 17461111 17461124 chr3L 17461197 17461210 6 86 1.0 2.0 1.5 2.4 99 chr3L 17461111 intergenic not near genes chr3L 17461160 intergenic not near genes chr3L 17461210 intergenic not near genes chr3L_6_17460001 chr3L_17460001 RAL-93 945 chr3L 17510744 17510766 chr3L 17510828 17510850 9 84 3.0 4.5 3.8 1.9 106 chr3L 17510744 exon Oatp74D + chr3L 17510797 intron Oatp74D + chr3L 17510850 intron Oatp74D + chr3L_9_17510001 chr3L_17510001 RAL-93 946 chr3L 17516978 17517013 chr3L 17524536 17524571 412 11 7556 3.0 3.5 3.2 2.6 7593 chr3L 17516978 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524571 3` UTR CG7564 + chr3L_11_17520001 chr3L_17520001 RAL-93 947 chr3L 17535812 17535846 chr3L 17535926 17535960 7 113 2.0 3.0 2.5 2.0 148 chr3L 17535812 intron Nedd4 + chr3L 17535886 intron Nedd4 + chr3L 17535960 intron Nedd4 + chr3L_7_17535001 chr3L_17535001 RAL-93 948 chr3L 17790621 17790631 chr3L 17790884 17790893 4 264 1.5 1.0 1.2 1.8 272 chr3L 17790621 intergenic CG42815 - chr3L 17790757 intergenic CG42815 - chr3L 17790893 intergenic CG42815 - chr3L_4_17790001 chr3L_17790001 RAL-93 949 chr3L 18163581 18163587 chr3L 18163660 18163682 5 91 0.0 5.0 2.5 1.4 101 chr3L 18163581 intergenic not near genes chr3L 18163632 intergenic not near genes chr3L 18163682 intergenic not near genes chr3L_5_18160001 chr3L_18160001 RAL-93 950 chr3L 18221099 18221128 chr3L 18221180 18221208 8 80 0.0 0.0 0.0 8.0 109 chr3L 18221099 intergenic not near genes chr3L 18221154 intergenic not near genes chr3L 18221208 intergenic not near genes chr3L_8_18220001 chr3L_18220001 RAL-93 951 chr3L 18223168 18223187 chr3L 18223251 18223267 5 82 0.0 1.5 0.8 2.8 99 chr3L 18223168 intergenic not near genes chr3L 18223218 intergenic not near genes chr3L 18223267 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-93 952 chr3L 18248952 18248985 chr3L 18249050 18249080 8 97 0.5 3.0 1.8 2.9 128 chr3L 18248952 intergenic not near genes chr3L 18249016 intergenic not near genes chr3L 18249080 intergenic not near genes chr3L_8_18245001 chr3L_18245001 RAL-93 953 chr3L 9013689 9013693 chr3L 18417066 18417066 4 9403375 26.5 12.0 19.2 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-93 954 chr3L 18456274 18456303 chr3L 18456362 18456391 5 88 2.5 2.5 2.5 1.4 117 chr3L 18456274 intergenic CR44670 - chr3L 18456332 intergenic CR44670 - chr3L 18456391 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-93 955 chr3L 18464507 18464515 chr3L 18464574 18464601 6 81 1.5 2.0 1.8 2.1 94 chr3L 18464507 intergenic not near genes chr3L 18464554 intergenic not near genes chr3L 18464601 intergenic not near genes chr3L_6_18460001 chr3L_18460001 RAL-93 956 chr3L 18634629 18634658 chr3L 18634711 18634742 10 84 0.5 1.5 1.0 5.0 113 chr3L 18634629 intron MYPT-75D + chr3L 18634686 intron MYPT-75D + chr3L 18634742 intron MYPT-75D + chr3L_10_18630001 chr3L_18630001 RAL-93 957 chr3L 18649645 18649654 chr3L 18650006 18650017 4 362 0.5 1.0 0.8 2.2 372 chr3L 18649645 intron MYPT-75D + chr3L 18649831 intron MYPT-75D + chr3L 18650017 intron MYPT-75D + chr3L_4_18645001 chr3L_18645001 RAL-93 958 chr3L 18653968 18653974 chr3L 18654040 18654047 4 76 2.5 5.5 4.0 0.8 79 chr3L 18653968 intron MYPT-75D + chr3L 18654008 intron MYPT-75D + chr3L 18654047 intron MYPT-75D + chr3L_4_18650001 chr3L_18650001 RAL-93 959 chr3L 18710772 18710789 chr3L 18718724 18718736 Stalker2 4 7951 0.5 1.5 1.0 2.0 7964 chr3L 18710772 intergenic not near genes chr3L 18714754 intergenic not near genes chr3L 18718736 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-93 960 chr3L 18772415 18772437 chr3L 18781096 18781118 roo 6 8680 3.0 2.5 2.8 1.6 8703 chr3L 18772415 intron ftz-f1 - chr3L 18776766 intron ftz-f1 - chr3L 18781118 intron ftz-f1 - chr3L_6_18775001 chr3L_18775001 RAL-93 961 chr3L 18924481 18924499 chr3L 18924557 18924575 4 76 1.5 1.0 1.2 1.8 94 chr3L 18924481 intron CG32204 - chr3L 18924528 intron CG32204 - chr3L 18924575 intron CG32204 - chr3L_4_18920001 chr3L_18920001 RAL-93 962 chr3L 18929981 18929991 chr3L 18930044 18930073 4 78 1.0 3.0 2.0 1.3 92 chr3L 18929981 intron CG32204 - chr3L 18930027 intron CG32204 - chr3L 18930073 exon CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-93 963 chr3L 18969612 18969617 chr3L 18969707 18969709 4 95 2.5 5.5 4.0 0.8 97 chr3L 18969612 intergenic not near genes chr3L 18969660 intergenic not near genes chr3L 18969709 intergenic not near genes chr3L_4_18965001 chr3L_18965001 RAL-93 964 chr3L 18969622 18969629 chr3L 18969694 18969725 8 88 0.5 3.5 2.0 2.7 103 chr3L 18969622 intergenic not near genes chr3L 18969674 intergenic not near genes chr3L 18969725 intergenic not near genes chr3L_8_18965001 chr3L_18965001 RAL-93 965 chr3L 19008860 19008870 chr3L 19009174 19009208 jockey 4 332 4.5 4.0 4.2 0.8 348 chr3L 19008860 intron nkd - chr3L 19009034 intron nkd - chr3L 19009208 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-93 966 chr3L 19090731 19090743 chr3L 19090813 19090824 8 81 3.0 2.5 2.8 2.1 93 chr3L 19090731 5` UTR CR45386 + chr3L 19090778 5` UTR CR45386 + chr3L 19090824 5` UTR CR45386 + chr3L_8_19090001 chr3L_19090001 RAL-93 967 chr3L 19115664 19115670 chr3L 19115815 19115849 BS 4 172 6.5 4.0 5.2 0.6 185 chr3L 19115664 intron CG14082 - chr3L 19115756 intron CG14082 - chr3L 19115849 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-93 968 chr3L 19117049 19117073 chr3L 19124494 19124519 mdg1 6 7446 3.5 5.0 4.2 1.2 7470 chr3L 19117049 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124519 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-93 969 chr3L 19182384 19182417 chr3L 19182465 19182497 5 80 0.5 2.5 1.5 2.0 113 chr3L 19182384 intron fz2 - chr3L 19182440 intron fz2 - chr3L 19182497 intron fz2 - chr3L_5_19180001 chr3L_19180001 RAL-93 970 chr3L 19208059 19208076 chr3L 19209431 19209448 Doc 5 1373 4.5 3.0 3.8 1.0 1389 chr3L 19208059 intron fz2 - chr3L 19208754 intron fz2 - chr3L 19209448 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-93 971 chr3L 19269822 19269843 chr3L 19270022 19270028 6 199 3.5 3.0 3.2 1.4 206 chr3L 19269822 intron,exon CG14085 +,CG14088 - chr3L 19269925 intron,exon CG14085 +,CG14088 - chr3L 19270028 intron,exon CG14085 +,CG14088 - chr3L_6_19265001 chr3L_19265001 RAL-93 972 chr3L 19423071 19423083 chr3L 19423159 19423174 6 90 1.0 7.5 4.2 1.2 103 chr3L 19423071 3` UTR CR32205 - chr3L 19423122 3` UTR CR32205 - chr3L 19423174 3` UTR CR32205 - chr3L_6_19420001 chr3L_19420001 RAL-93 973 chr3L 19430405 19430434 chr3L 19430483 19430512 4 78 0.0 2.5 1.2 1.8 107 chr3L 19430405 intergenic not near genes chr3L 19430458 intergenic not near genes chr3L 19430512 intergenic not near genes chr3L_4_19430001 chr3L_19430001 RAL-93 974 chr3L 19861821 19861853 chr3L 19863608 19863641 S-element 5 1788 2.0 2.0 2.0 1.7 1820 chr3L 19861821 5` UTR CR45433 + chr3L 19862731 intergenic not near genes chr3L 19863641 intergenic not near genes chr3L_5_19860001 chr3L_19860001 RAL-93 975 chr3L 19961262 19961355 chr3L 19961338 19961435 14 78 0.0 0.0 0.0 14.0 173 chr3L 19961262 intron Ac76E + chr3L 19961348 intron Ac76E + chr3L 19961435 intron Ac76E + chr3L_14_19960001 chr3L_19960001 RAL-93 976 chr3L 20030339 20030354 chr3L 20030419 20030434 4 80 4.0 3.0 3.5 0.9 95 chr3L 20030339 intergenic not near genes chr3L 20030386 intergenic not near genes chr3L 20030434 intergenic not near genes chr3L_4_20030001 chr3L_20030001 RAL-93 977 chr3L 20143080 20143110 chr3L 20143158 20143187 6 79 3.0 1.0 2.0 2.0 107 chr3L 20143080 intergenic not near genes chr3L 20143134 intergenic not near genes chr3L 20143187 intergenic not near genes chr3L_6_20140001 chr3L_20140001 RAL-93 978 chr3L 20148287 20148317 chr3L 20148377 20148407 9 89 2.5 1.5 2.0 3.0 120 chr3L 20148287 intergenic not near genes chr3L 20148347 intergenic not near genes chr3L 20148407 intergenic not near genes chr3L_9_20145001 chr3L_20145001 RAL-93 979 chr3L 20170322 20170339 chr3L 20170524 20170542 7 203 1.5 5.5 3.5 1.6 220 chr3L 20170322 intron CG42674 - chr3L 20170432 intron CG42674 - chr3L 20170542 intron CG42674 - chr3L_7_20170001 chr3L_20170001 RAL-93 980 chr3L 20182349 20182365 chr3L 20182451 20182466 6 102 2.0 2.5 2.2 1.9 117 chr3L 20182349 intron CG42674 - chr3L 20182408 intron CG42674 - chr3L 20182466 intron CG42674 - chr3L_6_20180001 chr3L_20180001 RAL-93 981 chr3L 20183421 20183440 chr3L 20183513 20183540 5 98 0.0 2.5 1.2 2.3 119 chr3L 20183421 intron CG42674 - chr3L 20183480 intron CG42674 - chr3L 20183540 intron CG42674 - chr3L_5_20180001 chr3L_20180001 RAL-93 982 chr3L 20242283 20242312 chr3L 20244272 20244302 13 1988 7.0 20.0 13.5 0.9 2019 chr3L 20242283 intron,intron Clc +,CG6951 + chr3L 20243292 exon,intron Clc +,CG6951 + chr3L 20244302 exon CG6951 + chr3L_13_20240001 chr3L_20240001 RAL-93 983 chr3L 20248448 20248473 chr3L 20248949 20248977 13 502 1.0 4.5 2.8 3.4 529 chr3L 20248448 intron rdgC + chr3L 20248712 intron rdgC + chr3L 20248977 intron rdgC + chr3L_13_20245001 chr3L_20245001 RAL-93 984 chr3L 20256642 20256668 chr3L 20256750 20256778 8 107 2.0 1.0 1.5 3.2 136 chr3L 20256642 intron rdgC + chr3L 20256710 intron rdgC + chr3L 20256778 intron rdgC + chr3L_8_20255001 chr3L_20255001 RAL-93 985 chr3L 20310610 20310631 chr3L 20310733 20310735 8 118 3.0 3.0 3.0 2.0 125 chr3L 20310610 intron polo + chr3L 20310672 intron polo + chr3L 20310735 intron polo + chr3L_8_20310001 chr3L_20310001 RAL-93 986 chr3L 20386938 20386971 chr3L 20387040 20387073 8 102 2.0 1.0 1.5 3.2 135 chr3L 20386938 intron fbl + chr3L 20387006 intron fbl + chr3L 20387073 intron fbl + chr3L_8_20385001 chr3L_20385001 RAL-93 987 chr3L 20440043 20440067 chr3L 20440190 20440214 4 147 0.5 4.0 2.2 1.2 171 chr3L 20440043 5` UTR CR43943 + chr3L 20440128 5` UTR CR43943 + chr3L 20440214 5` UTR CR43943 + chr3L_4_20440001 chr3L_20440001 RAL-93 988 chr3L 20476753 20476783 chr3L 20484352 20484382 springer 8 7599 3.5 1.5 2.5 2.3 7629 chr3L 20476753 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484382 3` UTR ZnT77C - chr3L_8_20480001 chr3L_20480001 RAL-93 989 chr3L 20641737 20641767 chr3L 20641815 20641845 8 78 2.0 4.5 3.2 1.9 108 chr3L 20641737 intergenic not near genes chr3L 20641791 intergenic not near genes chr3L 20641845 intergenic not near genes chr3L_8_20640001 chr3L_20640001 RAL-93 990 chr3L 20680614 20680631 chr3L 20680730 20680742 5 113 2.0 7.5 4.8 0.9 128 chr3L 20680614 intergenic not near genes chr3L 20680678 intergenic not near genes chr3L 20680742 intergenic not near genes chr3L_5_20680001 chr3L_20680001 RAL-93 991 chr3L 20733809 20733835 chr3L 20733895 20733921 8 86 1.5 3.0 2.2 2.5 112 chr3L 20733809 intron CG13252 + chr3L 20733865 intron CG13252 + chr3L 20733921 intron CG13252 + chr3L_8_20730001 chr3L_20730001 RAL-93 992 chr3L 20849270 20849292 chr3L 20849349 20849361 5 77 2.5 2.0 2.2 1.6 91 chr3L 20849270 intron CG32432 - chr3L 20849316 intron CG32432 - chr3L 20849361 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-93 993 chr3L 20863605 20863620 chr3L 20863796 20863811 6 191 3.0 2.5 2.8 1.6 206 chr3L 20863605 intron CG32432 - chr3L 20863708 intron CG32432 - chr3L 20863811 intron CG32432 - chr3L_6_20860001 chr3L_20860001 RAL-93 994 chr3L 20890925 20890943 chr3L 20891019 20891046 8 103 4.0 1.5 2.8 2.1 121 chr3L 20890925 intergenic not near genes chr3L 20890986 intergenic not near genes chr3L 20891046 intergenic not near genes chr3L_8_20890001 chr3L_20890001 RAL-93 995 chr3L 20913753 20913781 chr3L 20913834 20913863 8 81 1.5 3.0 2.2 2.5 110 chr3L 20913753 intergenic CR43930 - chr3L 20913808 intergenic CR43930 - chr3L 20913863 intergenic CR43930 - chr3L_8_20910001 chr3L_20910001 RAL-93 996 chr3L 20917090 20917116 chr3L 20917167 20917188 9 75 1.5 1.0 1.2 4.1 98 chr3L 20917090 intergenic not near genes chr3L 20917139 intergenic not near genes chr3L 20917188 intergenic not near genes chr3L_9_20915001 chr3L_20915001 RAL-93 997 chr3L 20948674 20948693 chr3L 20948765 20948784 6 91 0.5 3.5 2.0 2.0 110 chr3L 20948674 intron fng - chr3L 20948729 intron fng - chr3L 20948784 intron fng - chr3L_6_20945001 chr3L_20945001 RAL-93 998 chr3L 21014920 21014944 chr3L 21023400 21023415 Tirant 7 8473 6.0 3.0 4.5 1.3 8495 chr3L 21014920 intron skd - chr3L 21019168 intron skd - chr3L 21023415 intron skd - chr3L_7_21015001 chr3L_21015001 RAL-93 999 chr3L 21035453 21035472 chr3L 21035530 21035548 7 76 1.0 1.0 1.0 3.5 95 chr3L 21035453 intron siz + chr3L 21035500 intron siz + chr3L 21035548 intron siz + chr3L_7_21035001 chr3L_21035001 RAL-93 1000 chr3L 21057146 21057157 chr3L 21057362 21057362 5 214 3.0 2.0 2.5 1.4 216 chr3L 21057146 intron siz + chr3L 21057254 intron siz + chr3L 21057362 intron siz + chr3L_5_21055001 chr3L_21055001 RAL-93 1001 chr3L 21067952 21067981 chr3L 21068031 21068057 11 79 3.5 0.5 2.0 3.7 105 chr3L 21067952 intron siz + chr3L 21068004 intron siz + chr3L 21068057 intron siz + chr3L_11_21065001 chr3L_21065001 RAL-93 1002 chr3L 21082227 21082239 chr3L 21082296 21082317 4 76 1.5 4.0 2.8 1.1 90 chr3L 21082227 intron ko - chr3L 21082272 intron ko - chr3L 21082317 intron ko - chr3L_4_21080001 chr3L_21080001 RAL-93 1003 chr3L 21085582 21085612 chr3L 21085970 21086000 6 388 3.0 2.5 2.8 1.6 418 chr3L 21085582 intron ko - chr3L 21085791 intron ko - chr3L 21086000 intron ko - chr3L_6_21085001 chr3L_21085001 RAL-93 1004 chr3L 21125845 21125878 chr3L 21125928 21125950 7 78 0.5 5.0 2.8 1.8 105 chr3L 21125845 intron ko - chr3L 21125898 intron ko - chr3L 21125950 intron ko - chr3L_7_21125001 chr3L_21125001 RAL-93 1005 chr3L 21151866 21151895 chr3L 21156950 21156978 flea 8 5084 2.5 1.0 1.8 2.9 5112 chr3L 21151866 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156978 intron Ac78C - chr3L_8_21150001 chr3L_21150001 RAL-93 1006 chr3L 21303713 21303738 chr3L 21303800 21303825 9 87 2.0 2.5 2.2 2.8 112 chr3L 21303713 intron CG11309 - chr3L 21303769 intron CG11309 - chr3L 21303825 intron CG11309 - chr3L_9_21300001 chr3L_21300001 RAL-93 1007 chr3L 21306153 21306180 chr3L 21315312 21315339 roo 6 9159 0.5 1.5 1.0 3.0 9186 chr3L 21306153 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310746 intron Pc - chr3L 21315339 3` UTR Pc - chr3L_6_21310001 chr3L_21310001 RAL-93 1008 chr3L 21361734 21361751 chr3L 21362686 21362705 G2 6 954 1.0 3.5 2.2 1.9 971 chr3L 21361734 intergenic not near genes chr3L 21362220 intergenic not near genes chr3L 21362705 intergenic not near genes chr3L_6_21360001 chr3L_21360001 RAL-93 1009 chr3L 21372718 21372737 chr3L 21379226 21379245 McClintock 4 6508 0.5 1.0 0.8 2.2 6527 chr3L 21372718 intergenic not near genes chr3L 21375982 intergenic not near genes chr3L 21379245 intergenic not near genes chr3L_4_21375001 chr3L_21375001 RAL-93 1010 chr3L 21406992 21407027 chr3L 21407071 21407106 11 78 2.0 4.0 3.0 2.8 114 chr3L 21406992 intron rgn + chr3L 21407049 intron rgn + chr3L 21407106 intron rgn + chr3L_11_21405001 chr3L_21405001 RAL-93 1011 chr3L 21498840 21498869 chr3L 21500475 21500505 1360 12 1633 3.5 4.0 3.8 2.5 1665 chr3L 21498840 intron Glg1 - chr3L 21499672 intron Glg1 - chr3L 21500505 intron Glg1 - chr3L_12_21495001 chr3L_21495001 RAL-93 1012 chr3L 21639199 21639225 chr3L 21639278 21639304 10 79 2.5 2.5 2.5 2.9 105 chr3L 21639199 intergenic CG32444 +,CG32445 + chr3L 21639252 intergenic CG32445 +,CG32444 + chr3L 21639304 intergenic CG32445 +,CG32444 + chr3L_10_21635001 chr3L_21635001 RAL-93 1013 chr3L 21749324 21749329 chr3L 21754481 21754489 Doc 5 5159 6.0 4.0 5.0 0.8 5165 chr3L 21749324 intron Syn1 - chr3L 21751906 intron Syn1 - chr3L 21754489 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-93 1014 chr3L 21749332 21749341 chr3L 21754473 21754501 Doc 5 5156 4.5 3.0 3.8 1.0 5169 chr3L 21749332 intron Syn1 - chr3L 21751916 intron Syn1 - chr3L 21754501 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-93 1015 chr3L 21769602 21769638 chr3L 21769678 21769695 9 75 1.5 2.0 1.8 3.2 93 chr3L 21769602 intron,intron Syn1 -,CG42689 + chr3L 21769648 intron,intron Syn1 -,CG42689 + chr3L 21769695 intron,intron Syn1 -,CG42689 + chr3L_9_21765001 chr3L_21765001 RAL-93 1016 chr3L 21771899 21771914 chr3L 21772008 21772016 6 109 4.0 2.0 3.0 1.5 117 chr3L 21771899 intron CG42689 + chr3L 21771958 intron CG42689 + chr3L 21772016 intron CG42689 + chr3L_6_21770001 chr3L_21770001 RAL-93 1017 chr3L 21849500 21849525 chr3L 21849582 21849607 8 82 5.0 1.0 3.0 2.0 107 chr3L 21849500 intron mub + chr3L 21849554 intron mub + chr3L 21849607 intron mub + chr3L_8_21845001 chr3L_21845001 RAL-93 1018 chr3L 22020961 22020982 chr3L 22025979 22026001 7 5018 11.0 15.5 13.2 0.5 5040 chr3L 22020961 intergenic not near genes chr3L 22023481 intergenic not near genes chr3L 22026001 intergenic CG7140 - chr3L_7_22020001 chr3L_22020001 RAL-93 1019 chr3L 22114785 22114814 chr3L 22114863 22114892 7 78 0.0 0.5 0.2 5.8 107 chr3L 22114785 intergenic not near genes chr3L 22114838 intergenic not near genes chr3L 22114892 intergenic not near genes chr3L_7_22110001 chr3L_22110001 RAL-93 1020 chr3L 22195747 22195779 chr3L 22195930 22195962 11 184 24.0 21.0 22.5 0.5 215 chr3L 22195747 intron olf413 + chr3L 22195854 intron olf413 + chr3L 22195962 intron olf413 + chr3L_11_22195001 chr3L_22195001 RAL-93 1021 chr3L 22379940 22379965 chr3L 22380039 22380063 7 98 2.0 7.0 4.5 1.3 123 chr3L 22379940 intron Ten-m - chr3L 22380002 intron Ten-m - chr3L 22380063 intron Ten-m - chr3L_7_22380001 chr3L_22380001 RAL-93 1022 chr3L 22413882 22413897 chr3L 22413966 22413981 5 83 2.5 5.0 3.8 1.0 99 chr3L 22413882 intergenic not near genes chr3L 22413932 intergenic not near genes chr3L 22413981 intergenic not near genes chr3L_5_22410001 chr3L_22410001 RAL-93 1023 chr3L 22570426 22570455 chr3L 22570570 22570599 13 143 0.0 3.5 1.8 4.6 173 chr3L 22570426 intergenic not near genes chr3L 22570512 intergenic not near genes chr3L 22570599 intergenic not near genes chr3L_13_22570001 chr3L_22570001 RAL-93 1024 chr3L 22617193 22617211 chr3L 22624644 22624663 blood 4 7452 3.0 1.0 2.0 1.3 7470 chr3L 22617193 intron CG14459 - chr3L 22620928 intron CG14459 - chr3L 22624663 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-93 1025 chr3L 22626869 22626887 chr3L 22626959 22626977 9 90 2.0 3.0 2.5 2.6 108 chr3L 22626869 intron CG14459 - chr3L 22626923 intron CG14459 - chr3L 22626977 intron CG14459 - chr3L_9_22625001 chr3L_22625001 RAL-93 1026 chr3L 22631930 22631957 chr3L 22897036 22897064 Ivk 8 265105 20.0 1.0 10.5 0.7 265134 chr3L 22631930 intron CG14459 - chr3L 22764497 intron SPoCk + chr3L 22897064 intergenic CR44688 + chr3L_8_22760001 chr3L_22760001 RAL-93 1027 chr3L 22631385 22631412 chr3L 22633811 22633838 8 2427 31.5 8.5 20.0 0.4 2453 chr3L 22631385 intron CG14459 - chr3L 22632612 intron CG14459 - chr3L 22633838 intron CG14459 - chr3L_8_22630001 chr3L_22630001 RAL-93 1028 chr3L 22678077 22678110 chr3L 22678167 22678181 11 88 2.0 1.0 1.5 4.4 104 chr3L 22678077 intron CG14457 + chr3L 22678129 intron CG14457 + chr3L 22678181 intron CG14457 + chr3L_11_22675001 chr3L_22675001 RAL-93 1029 chr3L 22709385 22709415 chr3L 22709702 22709732 10 317 2.5 1.5 2.0 3.3 347 chr3L 22709385 intergenic not near genes chr3L 22709558 intergenic not near genes chr3L 22709732 intergenic not near genes chr3L_10_22705001 chr3L_22705001 RAL-93 1030 chr3L 22726249 22726453 chr3L 22726333 22726539 7 84 2.0 2.5 2.2 2.2 290 chr3L 22726249 3` UTR CG14450 - chr3L 22726394 3` UTR CG14450 - chr3L 22726539 3` UTR CG14450 - chr3L_7_22725001 chr3L_22725001 RAL-93 1031 chr3L 22743532 22743542 chr3L 22744703 22744712 NOF 7 1171 0.5 3.5 2.0 2.3 1180 chr3L 22743532 intron CG7369 + chr3L 22744122 intron CG7369 + chr3L 22744712 intron CG7369 + chr3L_7_22740001 chr3L_22740001 RAL-93 1032 chr3L 22759681 22759708 chr3L 22759777 22759778 4 88 2.0 0.0 1.0 2.0 97 chr3L 22759681 intron SPoCk + chr3L 22759730 intron SPoCk + chr3L 22759778 intron SPoCk + chr3L_4_22755001 chr3L_22755001 RAL-93 1033 chr3L 22760429 22760458 chr3L 22760514 22760543 7 84 0.5 2.0 1.2 3.2 114 chr3L 22760429 intron SPoCk + chr3L 22760486 intron SPoCk + chr3L 22760543 intron SPoCk + chr3L_7_22760001 chr3L_22760001 RAL-93 1034 chr3L 22838586 22838618 chr3L 22838665 22838699 8 81 3.5 0.5 2.0 2.7 113 chr3L 22838586 intergenic CG11226 + chr3L 22838642 intergenic CG11226 + chr3L 22838699 intergenic not near genes chr3L_8_22835001 chr3L_22835001 RAL-93 1035 chr3L 22853463 22853721 chr3L 22853549 22853807 18 86 4.0 4.5 4.2 3.5 344 chr3L 22853463 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853635 5` UTR CR43426 + chr3L 22853807 5` UTR CR43426 + chr3L_18_22850001 chr3L_22850001 RAL-93 1036 chr3L 22865993 22865999 chr3L 22867126 22867132 Doc 4 1133 2.5 3.0 2.8 1.1 1139 chr3L 22865993 intron CG33170 + chr3L 22866562 intron CG33170 + chr3L 22867132 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-93 1037 chr3L 22632828 22632850 chr3L 22896967 22896989 Ivk 7 264139 25.5 9.0 17.2 0.4 264161 chr3L 22632828 intron CG14459 - chr3L 22764908 intron SPoCk + chr3L 22896989 intergenic CR44688 + chr3L_7_22760001 chr3L_22760001 RAL-93 1038 chr3L 22909028 22909047 chr3L 22909119 22909138 7 91 5.0 6.5 5.8 1.0 110 chr3L 22909028 intergenic CR45661 + chr3L 22909083 intergenic CR45661 + chr3L 22909138 intergenic CR45661 + chr3L_7_22905001 chr3L_22905001 RAL-93 1039 chr3L 22974367 22974395 chr3L 22974438 22974473 9 77 2.0 1.0 1.5 3.6 106 chr3L 22974367 intergenic not near genes chr3L 22974420 intergenic not near genes chr3L 22974473 intergenic not near genes chr3L_9_22970001 chr3L_22970001 RAL-93 1040 chr3L 22989874 22989892 chr3L 22996848 22996863 297 5 6973 2.5 2.0 2.2 1.6 6989 chr3L 22989874 intergenic not near genes chr3L 22993368 intergenic not near genes chr3L 22996863 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-93 1041 chr3L 23101285 23101314 chr3L 23101493 23101524 4 209 1.5 0.0 0.8 2.2 239 chr3L 23101285 intron CkIIalpha + chr3L 23101404 intron CkIIalpha + chr3L 23101524 intron CkIIalpha + chr3L_4_23100001 chr3L_23100001 RAL-93 1042 chr3L 23182281 23182292 chr3L 23182387 23182406 9 111 4.0 3.5 3.8 1.9 125 chr3L 23182281 intron CG34031 + chr3L 23182344 intron CG34031 + chr3L 23182406 intron CG34031 + chr3L_9_23180001 chr3L_23180001 RAL-93 1043 chr3L 23259864 23259885 chr3L 23259944 23259965 8 78 7.0 2.5 4.8 1.4 101 chr3L 23259864 intron nAChRalpha4 + chr3L 23259914 intron nAChRalpha4 + chr3L 23259965 intron nAChRalpha4 + chr3L_8_23255001 chr3L_23255001 RAL-93 1044 chr3L 23875528 23875554 chr3L 23875609 23875619 6 77 2.5 3.0 2.8 1.6 91 chr3L 23875528 intron CG40470 - chr3L 23875574 intron CG40470 - chr3L 23875619 intron CG40470 - chr3L_6_23875001 chr3L_23875001 RAL-93 1045 chr3L 24012419 24012434 chr3L 24020754 24020774 roo 4 8339 1.0 1.5 1.2 1.8 8355 chr3L 24012419 intergenic not near genes chr3L 24016596 intergenic not near genes chr3L 24020774 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-93 1046 chr3R 1521168 1521180 chr3R 1521244 1521246 6 79 8.5 9.5 9.0 0.6 78 chr3R 1521168 intergenic not near genes chr3R 1521207 intergenic not near genes chr3R 1521246 intergenic not near genes chr3R_6_1520001 chr3R_1520001 RAL-93 1047 chr3R 2556886 2556906 chr3R 2557622 2557639 4 734 9.5 5.5 7.5 0.5 753 chr3R 2556886 intron CG41056 - chr3R 2557262 intron CG41056 - chr3R 2557639 intron CG41056 - chr3R_4_2555001 chr3R_2555001 RAL-93 1048 chr3R 3178703 3178714 chr3R 3595187 3595195 4 416482 8.0 10.5 9.2 0.4 416492 chr3R 3178703 intron CG42617 - chr3R 3386949 intergenic not near genes chr3R 3595195 intergenic not near genes chr3R_4_3385001 chr3R_3385001 RAL-93 1049 chr3R 4206069 4206102 chr3R 4211644 4211676 mdg3 4 5575 2.0 1.0 1.5 1.6 5607 chr3R 4206069 intron CG14636 - chr3R 4208872 intron CG14636 - chr3R 4211676 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-93 1050 chr3R 4366755 4366784 chr3R 4375138 4375167 roo 6 8382 1.5 2.0 1.8 2.1 8412 chr3R 4366755 3` UTR CG1090 + chr3R 4370961 intergenic not near genes chr3R 4375167 5` UTR CR44922 + chr3R_6_4370001 chr3R_4370001 RAL-93 1051 chr3R 4408412 4408438 chr3R 4412716 4412742 Juan 6 4303 2.0 2.0 2.0 2.0 4330 chr3R 4408412 intron CG32944 - chr3R 4410577 intron CG32944 - chr3R 4412742 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-93 1052 chr3R 4593473 4593503 chr3R 4593555 4593585 8 80 2.0 5.0 3.5 1.8 112 chr3R 4593473 intergenic not near genes chr3R 4593529 intergenic not near genes chr3R 4593585 intergenic not near genes chr3R_8_4590001 chr3R_4590001 RAL-93 1053 chr3R 4609546 4609576 chr3R 4610710 4610740 1360 11 1163 2.5 3.5 3.0 2.8 1194 chr3R 4609546 intergenic not near genes chr3R 4610143 intergenic not near genes chr3R 4610740 intergenic not near genes chr3R_11_4610001 chr3R_4610001 RAL-93 1054 chr3R 4683179 4683194 chr3R 4684938 4684948 S-element 7 1758 4.5 1.5 3.0 1.8 1769 chr3R 4683179 intron CG43427 + chr3R 4684064 intron CG43427 + chr3R 4684948 intron CG43427 + chr3R_7_4680001 chr3R_4680001 RAL-93 1055 chr3R 4753249 4753269 chr3R 4757552 4757572 F-element 8 4303 4.5 5.0 4.8 1.4 4323 chr3R 4753249 intron,intron atms +,CG44098 - chr3R 4755410 intron,intron atms +,CG44098 - chr3R 4757572 intron,exon atms +,CG44098 - chr3R_8_4755001 chr3R_4755001 RAL-93 1056 chr3R 4769164 4769188 chr3R 4769242 4769266 9 77 3.5 4.5 4.0 1.8 102 chr3R 4769164 intron,intron atms +,CG44098 - chr3R 4769215 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_9_4765001 chr3R_4765001 RAL-93 1057 chr3R 4784518 4784536 chr3R 4791392 4791418 6 6879 17.0 22.0 19.5 0.3 6900 chr3R 4784518 exon CG17387 - chr3R 4787968 exon ctrip - chr3R 4791418 exon ctrip - chr3R_6_4785001 chr3R_4785001 RAL-93 1058 chr3R 4904832 4904835 chr3R 18214656 18214659 4 13309823 9.5 5.0 7.2 0.5 13309827 chr3R 4904832 intergenic not near genes chr3R 11559746 3` UTR CG10898 + chr3R 18214659 intron CG7985 + chr3R_4_11555001 chr3R_11555001 RAL-93 1059 chr3R 4922343 4922361 chr3R 4922421 4922436 9 78 5.0 3.0 4.0 1.8 93 chr3R 4922343 intron Cdep + chr3R 4922390 intron Cdep + chr3R 4922436 intron Cdep + chr3R_9_4920001 chr3R_4920001 RAL-93 1060 chr3R 4966005 4966016 chr3R 4966097 4966108 6 92 5.0 4.5 4.8 1.0 103 chr3R 4966005 intron CG1124 + chr3R 4966056 intron CG1124 + chr3R 4966108 intron CG1124 + chr3R_6_4965001 chr3R_4965001 RAL-93 1061 chr3R 4966017 4966030 chr3R 4966096 4966122 6 90 3.0 4.0 3.5 1.3 105 chr3R 4966017 intron CG1124 + chr3R 4966070 intron CG1124 + chr3R 4966122 intron CG1124 + chr3R_6_4965001 chr3R_4965001 RAL-93 1062 chr3R 5045859 5045875 chr3R 5052961 5052977 HMS-Beagle 5 7102 2.0 1.5 1.8 1.8 7118 chr3R 5045859 intron CR43635 - chr3R 5049418 intergenic not near genes chr3R 5052977 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-93 1063 chr3R 5067980 5068011 chr3R 5073497 5073528 mdg3 9 5517 2.5 1.5 2.0 3.0 5548 chr3R 5067980 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073528 intergenic not near genes chr3R_9_5070001 chr3R_5070001 RAL-93 1064 chr3R 5191368 5191384 chr3R 5191644 5191670 4 280 25.5 21.5 23.5 0.2 302 chr3R 5191368 intron cno - chr3R 5191519 intron cno - chr3R 5191670 intron cno - chr3R_4_5190001 chr3R_5190001 RAL-93 1065 chr3R 5278087 5278121 chr3R 5278168 5278187 12 78 1.5 2.5 2.0 4.0 100 chr3R 5278087 intron mtd - chr3R 5278137 intron mtd - chr3R 5278187 intron mtd - chr3R_12_5275001 chr3R_5275001 RAL-93 1066 chr3R 5338396 5338420 chr3R 5343573 5343595 Rt1c 7 5176 1.0 4.0 2.5 2.0 5199 chr3R 5338396 intron mtd - chr3R 5340996 intron mtd - chr3R 5343595 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-93 1067 chr3R 5367145 5367178 chr3R 5367271 5367304 10 119 1.0 2.5 1.8 3.6 159 chr3R 5367145 intron Cerk - chr3R 5367224 intron Cerk - chr3R 5367304 intron Cerk - chr3R_10_5365001 chr3R_5365001 RAL-93 1068 chr3R 5385979 5386004 chr3R 5386150 5386175 13 171 1.0 3.0 2.0 4.3 196 chr3R 5385979 intron kkv - chr3R 5386077 intron kkv - chr3R 5386175 intron kkv - chr3R_13_5385001 chr3R_5385001 RAL-93 1069 chr3R 5445974 5445993 chr3R 5452434 5452453 Burdock 4 6460 0.0 3.5 1.8 1.4 6479 chr3R 5445974 intron CG14669 + chr3R 5449214 intron CG14669 + chr3R 5452453 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-93 1070 chr3R 5712090 5712112 chr3R 5712177 5712200 6 88 2.0 2.0 2.0 2.0 110 chr3R 5712090 3` UTR plx + chr3R 5712145 3` UTR plx + chr3R 5712200 3` UTR plx + chr3R_6_5710001 chr3R_5710001 RAL-93 1071 chr3R 5746018 5746046 chr3R 5746258 5746286 pogo 14 241 1.5 4.0 2.8 3.7 268 chr3R 5746018 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746286 3` UTR Madm + chr3R_14_5745001 chr3R_5745001 RAL-93 1072 chr3R 5772379 5772402 chr3R 5772537 5772560 4 158 0.5 1.0 0.8 2.2 181 chr3R 5772379 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772560 intron CG2082 - chr3R_4_5770001 chr3R_5770001 RAL-93 1073 chr3R 5809119 5809143 chr3R 5809360 5809384 pogo 7 240 2.5 5.0 3.8 1.5 265 chr3R 5809119 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809384 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-93 1074 chr3R 5822382 5822409 chr3R 5823548 5823576 1360 9 1167 3.0 6.0 4.5 1.6 1194 chr3R 5822382 3` UTR CG2023 - chr3R 5822979 3` UTR CG2023 - chr3R 5823576 3` UTR CG2023 - chr3R_9_5820001 chr3R_5820001 RAL-93 1075 chr3R 5846874 5846902 chr3R 5846950 5846978 4 76 1.5 0.0 0.8 2.2 104 chr3R 5846874 intergenic CG1213 +,CG14676 + chr3R 5846926 intergenic CG14676 +,CG1213 + chr3R 5846978 intergenic CG14676 +,CG1213 + chr3R_4_5845001 chr3R_5845001 RAL-93 1076 chr3R 5880783 5880818 chr3R 5881129 5881163 11 343 4.5 3.0 3.8 2.3 380 chr3R 5880783 intron CG34113 - chr3R 5880973 intron CG34113 - chr3R 5881163 intron CG34113 - chr3R_11_5880001 chr3R_5880001 RAL-93 1077 chr3R 5895968 5895975 chr3R 5896180 5896189 4 214 2.5 1.5 2.0 1.3 221 chr3R 5895968 intron CG34113 - chr3R 5896078 intron CG34113 - chr3R 5896189 intron CG34113 - chr3R_4_5895001 chr3R_5895001 RAL-93 1078 chr3R 5896992 5896999 chr3R 5897326 5897357 5 349 3.5 2.5 3.0 1.2 365 chr3R 5896992 intron CG34113 - chr3R 5897174 intron CG34113 - chr3R 5897357 intron CG34113 - chr3R_5_5895001 chr3R_5895001 RAL-93 1079 chr3R 5927563 5927581 chr3R 5927799 5927821 pogo 5 239 5.0 4.5 4.8 0.9 258 chr3R 5927563 intron CG34113 - chr3R 5927692 intron CG34113 - chr3R 5927821 intron CG34113 - chr3R_5_5925001 chr3R_5925001 RAL-93 1080 chr3R 5935360 5935384 chr3R 5935436 5935459 6 76 0.5 1.0 0.8 3.3 99 chr3R 5935360 intron CG34113 - chr3R 5935410 intron CG34113 - chr3R 5935459 intron CG34113 - chr3R_6_5935001 chr3R_5935001 RAL-93 1081 chr3R 5943405 5943413 chr3R 5943483 5943492 4 78 4.0 1.5 2.8 1.1 87 chr3R 5943405 intron CG34113 - chr3R 5943448 intron CG34113 - chr3R 5943492 intron CG34113 - chr3R_4_5940001 chr3R_5940001 RAL-93 1082 chr3R 5988898 5988934 chr3R 5989096 5989135 11 200 1.5 2.0 1.8 3.9 237 chr3R 5988898 intergenic CR44927 + chr3R 5989016 intergenic CR44927 + chr3R 5989135 intergenic CR44927 + chr3R_11_5985001 chr3R_5985001 RAL-93 1083 chr3R 6015963 6015989 chr3R 6024444 6024469 Tirant 9 8479 3.5 3.0 3.2 2.1 8506 chr3R 6015963 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024469 intergenic not near genes chr3R_9_6020001 chr3R_6020001 RAL-93 1084 chr3R 6175175 6175197 chr3R 6182446 6182469 HMS-Beagle2 4 7272 1.0 3.0 2.0 1.3 7294 chr3R 6175175 intergenic Osi1 + chr3R 6178822 intron CR45194 + chr3R 6182469 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-93 1085 chr3R 6194951 6194973 chr3R 6195030 6195053 6 80 5.0 3.5 4.2 1.2 102 chr3R 6194951 3` UTR NPFR + chr3R 6195002 3` UTR NPFR + chr3R 6195053 3` UTR NPFR + chr3R_6_6195001 chr3R_6195001 RAL-93 1086 chr3R 6199210 6199242 chr3R 6201035 6201067 11 1826 16.0 24.5 20.2 0.5 1857 chr3R 6199210 5` UTR Osi24 + chr3R 6200138 intron Osi24 + chr3R 6201067 intron Osi24 + chr3R_11_6200001 chr3R_6200001 RAL-93 1087 chr3R 6415225 6415252 chr3R 6415320 6415348 6 94 0.5 3.0 1.8 2.1 123 chr3R 6415225 intron gpp + chr3R 6415286 intron gpp + chr3R 6415348 intron gpp + chr3R_6_6415001 chr3R_6415001 RAL-93 1088 chr3R 6538205 6538222 chr3R 6538303 6538315 8 96 3.5 4.5 4.0 1.6 110 chr3R 6538205 intron dpr11 - chr3R 6538260 intron dpr11 - chr3R 6538315 exon dpr11 - chr3R_8_6535001 chr3R_6535001 RAL-93 1089 chr3R 6550333 6550351 chr3R 6550403 6550432 9 79 1.5 1.5 1.5 3.6 99 chr3R 6550333 intron dpr11 - chr3R 6550382 intron dpr11 - chr3R 6550432 intron dpr11 - chr3R_9_6550001 chr3R_6550001 RAL-93 1090 chr3R 6551111 6551141 chr3R 6551205 6551235 8 93 2.0 3.5 2.8 2.1 124 chr3R 6551111 intron dpr11 - chr3R 6551173 intron dpr11 - chr3R 6551235 intron dpr11 - chr3R_8_6550001 chr3R_6550001 RAL-93 1091 chr3R 6639912 6639933 chr3R 6639990 6640010 10 77 8.0 0.0 4.0 2.0 98 chr3R 6639912 intergenic not near genes chr3R 6639961 intergenic not near genes chr3R 6640010 intergenic not near genes chr3R_10_6635001 chr3R_6635001 RAL-93 1092 chr3R 6655330 6655333 chr3R 6657346 6657378 9 2020 21.0 24.0 22.5 0.4 2048 chr3R 6655330 exon Taf1 + chr3R 6656354 3` UTR CG1307 - chr3R 6657378 5` UTR CG1307 - chr3R_9_6655001 chr3R_6655001 RAL-93 1093 chr3R 6698007 6698013 chr3R 6698086 6698092 4 78 1.5 0.5 1.0 2.0 85 chr3R 6698007 intergenic not near genes chr3R 6698050 intergenic not near genes chr3R 6698092 intergenic not near genes chr3R_4_6695001 chr3R_6695001 RAL-93 1094 chr3R 6737499 6737531 chr3R 6739286 6739316 Doc 5 1787 1.0 0.5 0.8 2.8 1817 chr3R 6737499 intron pb - chr3R 6738408 intron pb - chr3R 6739316 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-93 1095 chr3R 6773572 6773583 chr3R 6773646 6773671 5 84 5.0 4.0 4.5 0.9 99 chr3R 6773572 intron CR42721 + chr3R 6773622 intron CR42721 + chr3R 6773671 intron CR42721 + chr3R_5_6770001 chr3R_6770001 RAL-93 1096 chr3R 6862220 6862249 chr3R 6862306 6862335 7 86 1.5 2.5 2.0 2.3 115 chr3R 6862220 intergenic not near genes chr3R 6862278 intergenic not near genes chr3R 6862335 intergenic not near genes chr3R_7_6860001 chr3R_6860001 RAL-93 1097 chr3R 6912111 6912131 chr3R 6912222 6912242 5 111 1.5 0.0 0.8 2.8 131 chr3R 6912111 intron Antp - chr3R 6912176 intron Antp - chr3R 6912242 intron Antp - chr3R_5_6910001 chr3R_6910001 RAL-93 1098 chr3R 6923581 6923591 chr3R 6923668 6923678 5 86 2.0 2.0 2.0 1.7 97 chr3R 6923581 intron Antp - chr3R 6923630 intron Antp - chr3R 6923678 intron Antp - chr3R_5_6920001 chr3R_6920001 RAL-93 1099 chr3R 6961180 6961196 chr3R 6961259 6961274 5 79 5.0 3.0 4.0 1.0 94 chr3R 6961180 intron Antp - chr3R 6961227 intron Antp - chr3R 6961274 intron Antp - chr3R_5_6960001 chr3R_6960001 RAL-93 1100 chr3R 7012218 7012227 chr3R 7012282 7012304 4 73 3.5 2.5 3.0 1.0 86 chr3R 7012218 intergenic not near genes chr3R 7012261 intergenic not near genes chr3R 7012304 intergenic not near genes chr3R_4_7010001 chr3R_7010001 RAL-93 1101 chr3R 7060253 7060284 chr3R 7060334 7060365 4 81 2.5 2.5 2.5 1.1 112 chr3R 7060253 3` UTR dj + chr3R 7060309 3` UTR dj + chr3R 7060365 3` UTR dj + chr3R_4_7060001 chr3R_7060001 RAL-93 1102 chr3R 7103290 7103318 chr3R 7103366 7103394 11 73 5.0 5.0 5.0 1.8 104 chr3R 7103290 intron Alh - chr3R 7103342 intron Alh - chr3R 7103394 intron Alh - chr3R_11_7100001 chr3R_7100001 RAL-93 1103 chr3R 7281067 7281079 chr3R 7281159 7281171 4 92 1.5 5.5 3.5 0.9 104 chr3R 7281067 intron rn - chr3R 7281119 intron rn - chr3R 7281171 intron rn - chr3R_4_7280001 chr3R_7280001 RAL-93 1104 chr3R 7447995 7448002 chr3R 7448073 7448079 8 78 5.0 3.5 4.2 1.5 84 chr3R 7447995 intergenic not near genes chr3R 7448037 intergenic not near genes chr3R 7448079 intergenic not near genes chr3R_8_7445001 chr3R_7445001 RAL-93 1105 chr3R 7729480 7729495 chr3R 7737418 7737422 Stalker2 4 7933 0.5 3.5 2.0 1.3 7942 chr3R 7729480 intergenic not near genes chr3R 7733451 intergenic not near genes chr3R 7737422 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-93 1106 chr3R 7761290 7761319 chr3R 7761366 7761395 9 76 5.0 1.5 3.2 2.1 105 chr3R 7761290 intron Sp7 + chr3R 7761342 intron Sp7 + chr3R 7761395 intron Sp7 + chr3R_9_7760001 chr3R_7760001 RAL-93 1107 chr3R 8013887 8013906 chr3R 8022851 8022874 9 8965 19.5 31.0 25.2 0.3 8987 chr3R 8013887 exon Pbp95 + chr3R 8018380 exon CG2747 - chr3R 8022874 exon CG2747 - chr3R_9_8015001 chr3R_8015001 RAL-93 1108 chr3R 8040652 8040675 chr3R 8040733 8040759 5 83 2.5 1.5 2.0 1.7 107 chr3R 8040652 intergenic not near genes chr3R 8040706 intergenic not near genes chr3R 8040759 intergenic CG43060 + chr3R_5_8040001 chr3R_8040001 RAL-93 1109 chr3R 8090276 8090304 chr3R 8090453 8090480 5 177 2.0 3.0 2.5 1.4 204 chr3R 8090276 5` UTR CR44330 + chr3R 8090378 intergenic CR44330 + chr3R 8090480 intergenic CR44330 + chr3R_5_8090001 chr3R_8090001 RAL-93 1110 chr3R 8101764 8101784 chr3R 8104848 8104868 G2 7 3082 1.0 3.5 2.2 2.2 3104 chr3R 8101764 exon CG7900 + chr3R 8103316 intron CG7900 + chr3R 8104868 3` UTR CG7900 + chr3R_7_8100001 chr3R_8100001 RAL-93 1111 chr3R 8207555 8207582 chr3R 8208400 8208424 F-element 7 839 1.5 3.0 2.2 2.2 869 chr3R 8207555 intergenic not near genes chr3R 8207990 intergenic not near genes chr3R 8208424 intergenic not near genes chr3R_7_8205001 chr3R_8205001 RAL-93 1112 chr3R 8247901 8247924 chr3R 8247981 8248006 4 81 2.0 0.0 1.0 2.0 105 chr3R 8247901 intron,intron CG18749 +,CG33722 + chr3R 8247954 3` UTR,3` UTR CG18749 +,CG33722 + chr3R 8248006 3` UTR,3` UTR CG18749 +,CG33722 + chr3R_4_8245001 chr3R_8245001 RAL-93 1113 chr3R 8339246 8339247 chr3R 21907534 21907536 9 13568289 17.5 17.5 17.5 0.5 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-93 1114 chr3R 8393591 8393598 chr3R 8393668 8393676 4 80 4.0 1.0 2.5 1.1 85 chr3R 8393591 intron CG45263 - chr3R 8393634 intron CG45263 - chr3R 8393676 intron CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-93 1115 chr3R 8403005 8403040 chr3R 8412171 8412206 roo 11 9165 3.5 5.0 4.2 2.1 9201 chr3R 8403005 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-93 1116 chr3R 8534779 8534813 chr3R 8535036 8535070 9 257 2.5 4.5 3.5 2.0 291 chr3R 8534779 intergenic not near genes chr3R 8534924 intergenic not near genes chr3R 8535070 intergenic not near genes chr3R_9_8530001 chr3R_8530001 RAL-93 1117 chr3R 8570479 8570501 chr3R 8575145 8575164 HMS-Beagle 11 4664 3.5 1.5 2.5 3.1 4685 chr3R 8570479 intergenic not near genes chr3R 8572822 intergenic not near genes chr3R 8575164 intergenic not near genes chr3R_11_8570001 chr3R_8570001 RAL-93 1118 chr3R 8621541 8621572 chr3R 8621618 8621625 9 74 2.0 2.5 2.2 2.8 84 chr3R 8621541 intron 5-HT2B + chr3R 8621583 intron 5-HT2B + chr3R 8621625 intron 5-HT2B + chr3R_9_8620001 chr3R_8620001 RAL-93 1119 chr3R 8636936 8636963 chr3R 8637239 8637248 7 299 2.5 2.5 2.5 2.0 312 chr3R 8636936 intergenic not near genes chr3R 8637092 intergenic not near genes chr3R 8637248 intergenic not near genes chr3R_7_8635001 chr3R_8635001 RAL-93 1120 chr3R 8707357 8707385 chr3R 8709798 8709826 jockey 12 2441 5.5 8.5 7.0 1.5 2469 chr3R 8707357 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_12_8705001 chr3R_8705001 RAL-93 1121 chr3R 8917906 8917912 chr3R 8917986 8917992 4 80 1.0 4.5 2.8 1.1 86 chr3R 8917906 intron pyd - chr3R 8917949 intron pyd - chr3R 8917992 intron pyd - chr3R_4_8915001 chr3R_8915001 RAL-93 1122 chr3R 8923987 8924010 chr3R 8928467 8928485 10 4476 25.5 26.0 25.8 0.4 4498 chr3R 8923987 intron pyd - chr3R 8926236 intron pyd - chr3R 8928485 intron pyd - chr3R_10_8925001 chr3R_8925001 RAL-93 1123 chr3R 9227937 9227964 chr3R 9228050 9228077 4 113 3.0 1.0 2.0 1.3 140 chr3R 9227937 intron pum - chr3R 9228007 intron pum - chr3R 9228077 intron pum - chr3R_4_9225001 chr3R_9225001 RAL-93 1124 chr3R 9296314 9296321 chr3R 9296407 9296414 4 93 2.0 2.5 2.2 1.2 100 chr3R 9296314 intron CG8861 - chr3R 9296364 intron CG8861 - chr3R 9296414 intron CG8861 - chr3R_4_9295001 chr3R_9295001 RAL-93 1125 chr3R 9304528 9304541 chr3R 9311815 9311827 Stalker4 4 7286 7.5 0.5 4.0 0.8 7299 chr3R 9304528 intron CG8861 - chr3R 9308178 intron CG8861 - chr3R 9311827 intron CG8861 - chr3R_4_9305001 chr3R_9305001 RAL-93 1126 chr3R 9319577 9319601 chr3R 9320009 9320036 jockey 5 434 2.5 4.0 3.2 1.2 459 chr3R 9319577 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320036 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-93 1127 chr3R 9390539 9390563 chr3R 9390618 9390645 6 83 1.5 0.0 0.8 3.3 106 chr3R 9390539 intron FER - chr3R 9390592 intron FER - chr3R 9390645 intron FER - chr3R_6_9390001 chr3R_9390001 RAL-93 1128 chr3R 9442295 9442312 chr3R 9442643 9442663 6 350 2.0 0.5 1.2 2.7 368 chr3R 9442295 intron ps + chr3R 9442479 intron ps + chr3R 9442663 intron ps + chr3R_6_9440001 chr3R_9440001 RAL-93 1129 chr3R 9699972 9700002 chr3R 9700061 9700090 1360 6 88 3.5 2.5 3.0 1.5 118 chr3R 9699972 intron Unc-115a - chr3R 9700031 intron Unc-115a - chr3R 9700090 intron Unc-115a - chr3R_6_9700001 chr3R_9700001 RAL-93 1130 chr3R 9724664 9724691 chr3R 9724746 9724774 11 83 3.5 4.0 3.8 2.3 110 chr3R 9724664 exon hyd - chr3R 9724719 intron hyd - chr3R 9724774 intron hyd - chr3R_11_9720001 chr3R_9720001 RAL-93 1131 chr3R 9739915 9739947 chr3R 9741860 9741891 12 1945 14.0 18.0 16.0 0.7 1976 chr3R 9739915 5` UTR CG12950 - chr3R 9740903 5` UTR Pnn + chr3R 9741891 exon Pnn + chr3R_12_9740001 chr3R_9740001 RAL-93 1132 chr3R 9765930 9765936 chr3R 9766001 9766012 4 74 3.0 5.5 4.2 0.8 82 chr3R 9765930 3` UTR CG8478 + chr3R 9765971 3` UTR CG8478 + chr3R 9766012 3` UTR CG8478 + chr3R_4_9765001 chr3R_9765001 RAL-93 1133 chr3R 9836869 9836901 chr3R 9836957 9836989 11 87 3.5 2.5 3.0 2.8 120 chr3R 9836869 intron Teh1 - chr3R 9836929 intron Teh1 - chr3R 9836989 intron Teh1 - chr3R_11_9835001 chr3R_9835001 RAL-93 1134 chr3R 9898787 9898810 chr3R 9898879 9898891 8 89 2.0 1.5 1.8 2.9 104 chr3R 9898787 intron Glut4EF + chr3R 9898839 intron Glut4EF + chr3R 9898891 intron Glut4EF + chr3R_8_9895001 chr3R_9895001 RAL-93 1135 chr3R 9925261 9925286 chr3R 9925343 9925376 14 88 2.0 2.5 2.2 4.4 115 chr3R 9925261 intron Glut4EF + chr3R 9925318 intron Glut4EF + chr3R 9925376 intron Glut4EF + chr3R_14_9925001 chr3R_9925001 RAL-93 1136 chr3R 10024621 10024656 chr3R 10024815 10024851 10 194 4.0 2.5 3.2 2.4 230 chr3R 10024621 intron,intron Mical -,CG31407 - chr3R 10024736 intron,intron Mical -,CG31407 - chr3R 10024851 intron,intron Mical -,CG31407 - chr3R_10_10020001 chr3R_10020001 RAL-93 1137 chr3R 10094347 10094379 chr3R 10094433 10094447 13 84 2.0 2.0 2.0 4.3 100 chr3R 10094347 5` UTR CR43459 + chr3R 10094397 5` UTR CR43459 + chr3R 10094447 5` UTR CR43459 + chr3R_13_10090001 chr3R_10090001 RAL-93 1138 chr3R 10175281 10175318 chr3R 10175520 10175548 15 238 3.5 3.5 3.5 3.3 267 chr3R 10175281 intron CG12814 - chr3R 10175414 intron CG12814 - chr3R 10175548 intron CG12814 - chr3R_15_10175001 chr3R_10175001 RAL-93 1139 chr3R 10403031 10403064 chr3R 10403112 10403145 4 80 1.0 1.5 1.2 1.8 114 chr3R 10403031 3` UTR CG6325 - chr3R 10403088 3` UTR CG6325 - chr3R 10403145 3` UTR CG6325 - chr3R_4_10400001 chr3R_10400001 RAL-93 1140 chr3R 10594160 10594185 chr3R 10594244 10594248 10 81 2.0 5.0 3.5 2.2 88 chr3R 10594160 intron hth - chr3R 10594204 intron hth - chr3R 10594248 intron hth - chr3R_10_10590001 chr3R_10590001 RAL-93 1141 chr3R 10636766 10636775 chr3R 10636907 10636922 4 148 3.5 5.0 4.2 0.8 156 chr3R 10636766 intergenic not near genes chr3R 10636844 intergenic not near genes chr3R 10636922 intergenic not near genes chr3R_4_10635001 chr3R_10635001 RAL-93 1142 chr3R 10731088 10731118 chr3R 10731417 10731447 8 329 2.0 5.0 3.5 1.8 359 chr3R 10731088 intergenic not near genes chr3R 10731268 intergenic not near genes chr3R 10731447 intergenic not near genes chr3R_8_10730001 chr3R_10730001 RAL-93 1143 chr3R 10752721 10752753 chr3R 10752804 10752838 9 84 1.0 2.5 1.8 3.2 117 chr3R 10752721 intergenic not near genes chr3R 10752780 intergenic not near genes chr3R 10752838 intergenic CG14691 - chr3R_9_10750001 chr3R_10750001 RAL-93 1144 chr3R 10886871 10886906 chr3R 10886951 10886986 11 80 2.0 1.0 1.5 4.4 115 chr3R 10886871 intron Leash + chr3R 10886928 intron Leash + chr3R 10886986 intron Leash + chr3R_11_10885001 chr3R_10885001 RAL-93 1145 chr3R 10919690 10919715 chr3R 10919768 10919793 7 78 2.0 4.0 3.0 1.8 103 chr3R 10919690 intergenic not near genes chr3R 10919742 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_7_10915001 chr3R_10915001 RAL-93 1146 chr3R 10952758 10952786 chr3R 10952837 10952868 11 82 2.0 3.5 2.8 2.9 110 chr3R 10952758 intergenic not near genes chr3R 10952813 intergenic not near genes chr3R 10952868 intergenic not near genes chr3R_11_10950001 chr3R_10950001 RAL-93 1147 chr3R 11085464 11085489 chr3R 11085540 11085566 5 77 0.0 2.0 1.0 2.5 102 chr3R 11085464 3` UTR CR44940 - chr3R 11085515 intergenic CR44940 - chr3R 11085566 intergenic CR44940 - chr3R_5_11085001 chr3R_11085001 RAL-93 1148 chr3R 11102324 11102355 chr3R 11102404 11102436 8 80 3.5 2.5 3.0 2.0 112 chr3R 11102324 intergenic not near genes chr3R 11102380 intergenic not near genes chr3R 11102436 intergenic not near genes chr3R_8_11100001 chr3R_11100001 RAL-93 1149 chr3R 11103170 11103177 chr3R 11103252 11103259 5 82 0.0 0.0 0.0 5.0 89 chr3R 11103170 intergenic not near genes chr3R 11103214 intergenic not near genes chr3R 11103259 intergenic not near genes chr3R_5_11100001 chr3R_11100001 RAL-93 1150 chr3R 11144176 11144201 chr3R 11144550 11144579 8 376 1.0 1.5 1.2 3.6 403 chr3R 11144176 intergenic CheA86a - chr3R 11144378 3` UTR CheA86a - chr3R 11144579 exon CheA86a - chr3R_8_11140001 chr3R_11140001 RAL-93 1151 chr3R 11174604 11174613 chr3R 11175317 11175321 4 712 15.5 20.0 17.8 0.2 717 chr3R 11174604 exon Ugt86Dj - chr3R 11174962 intron Ugt86Dj - chr3R 11175321 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 RAL-93 1152 chr3R 11261227 11261250 chr3R 11261323 11261346 16 95 3.0 3.5 3.2 3.8 119 chr3R 11261227 intergenic not near genes chr3R 11261286 intergenic not near genes chr3R 11261346 intergenic not near genes chr3R_16_11260001 chr3R_11260001 RAL-93 1153 chr3R 11307189 11307222 chr3R 11307276 11307308 6 86 3.0 3.0 3.0 1.5 119 chr3R 11307189 intergenic not near genes chr3R 11307248 intergenic not near genes chr3R 11307308 intergenic not near genes chr3R_6_11305001 chr3R_11305001 RAL-93 1154 chr3R 11325347 11325367 chr3R 11325442 11325461 5 95 3.0 5.5 4.2 1.0 114 chr3R 11325347 intergenic not near genes chr3R 11325404 intergenic not near genes chr3R 11325461 intergenic not near genes chr3R_5_11325001 chr3R_11325001 RAL-93 1155 chr3R 11342558 11342572 chr3R 11342634 11342648 9 76 2.5 2.0 2.2 2.8 90 chr3R 11342558 intron pros + chr3R 11342603 intron pros + chr3R 11342648 intron pros + chr3R_9_11340001 chr3R_11340001 RAL-93 1156 chr3R 11345637 11345662 chr3R 11345736 11345760 6 98 4.5 2.5 3.5 1.3 123 chr3R 11345637 intron pros + chr3R 11345698 intron pros + chr3R 11345760 intron pros + chr3R_6_11345001 chr3R_11345001 RAL-93 1157 chr3R 11379245 11379256 chr3R 11388399 11388411 roo 4 9154 1.5 2.0 1.8 1.4 9166 chr3R 11379245 intron pros + chr3R 11383828 intron pros + chr3R 11388411 intron pros + chr3R_4_11380001 chr3R_11380001 RAL-93 1158 chr3R 11406292 11406311 chr3R 11406369 11406388 5 76 1.0 3.0 2.0 1.7 96 chr3R 11406292 3` UTR pros + chr3R 11406340 3` UTR pros + chr3R 11406388 3` UTR pros + chr3R_5_11405001 chr3R_11405001 RAL-93 1159 chr3R 11694730 11694749 chr3R 11694821 11694842 6 93 0.5 1.5 1.0 3.0 112 chr3R 11694730 intergenic Fer3 - chr3R 11694786 intergenic Fer3 - chr3R 11694842 intergenic not near genes chr3R_6_11690001 chr3R_11690001 RAL-93 1160 chr3R 11695743 11695768 chr3R 11695824 11695849 9 80 1.5 4.0 2.8 2.4 106 chr3R 11695743 intergenic not near genes chr3R 11695796 intergenic not near genes chr3R 11695849 intergenic not near genes chr3R_9_11695001 chr3R_11695001 RAL-93 1161 chr3R 11710216 11710234 chr3R 11710293 11710312 5 78 5.0 5.5 5.2 0.8 96 chr3R 11710216 intergenic not near genes chr3R 11710264 intergenic not near genes chr3R 11710312 intergenic not near genes chr3R_5_11710001 chr3R_11710001 RAL-93 1162 chr3R 11757739 11757757 chr3R 11757840 11757858 6 99 3.5 1.0 2.2 1.9 119 chr3R 11757739 intron Lk6 - chr3R 11757798 intron Lk6 - chr3R 11757858 intron Lk6 - chr3R_6_11755001 chr3R_11755001 RAL-93 1163 chr3R 11841063 11841093 chr3R 11846250 11846265 BS 5 5182 3.0 1.0 2.0 1.7 5202 chr3R 11841063 intron CG6959 - chr3R 11843664 intron CG6959 - chr3R 11846265 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-93 1164 chr3R 11909377 11909395 chr3R 11909440 11909451 12 68 4.5 2.5 3.5 2.7 74 chr3R 11909377 intron Cad87A - chr3R 11909414 intron Cad87A - chr3R 11909451 intron Cad87A - chr3R_12_11905001 chr3R_11905001 RAL-93 1165 chr3R 11932270 11932292 chr3R 11932656 11932678 4 386 4.5 7.0 5.8 0.6 408 chr3R 11932270 intron,exon Cad87A -,CG14731 + chr3R 11932474 intron,exon Cad87A -,CG14731 + chr3R 11932678 intron,exon Cad87A -,CG14731 + chr3R_4_11930001 chr3R_11930001 RAL-93 1166 chr3R 12022889 12022913 chr3R 12025064 12025083 pogo 5 2173 3.0 2.0 2.5 1.4 2194 chr3R 12022889 intergenic not near genes chr3R 12023986 intergenic not near genes chr3R 12025083 intergenic not near genes chr3R_5_12020001 chr3R_12020001 RAL-93 1167 chr3R 12082000 12082028 chr3R 12082076 12082104 12 75 5.0 1.0 3.0 3.0 104 chr3R 12082000 intron CG14741 - chr3R 12082052 intron CG14741 - chr3R 12082104 intron CG14741 - chr3R_12_12080001 chr3R_12080001 RAL-93 1168 chr3R 12111893 12111922 chr3R 12111968 12111997 7 76 1.0 3.0 2.0 2.3 104 chr3R 12111893 intergenic dpr17 + chr3R 12111945 intergenic not near genes chr3R 12111997 intergenic not near genes chr3R_7_12110001 chr3R_12110001 RAL-93 1169 chr3R 12135505 12135534 chr3R 12135744 12135773 10 239 1.5 5.5 3.5 2.2 268 chr3R 12135505 intergenic not near genes chr3R 12135639 intergenic not near genes chr3R 12135773 intergenic not near genes chr3R_10_12135001 chr3R_12135001 RAL-93 1170 chr3R 12214348 12214372 chr3R 12214428 12214463 10 87 3.0 3.0 3.0 2.5 115 chr3R 12214348 3` UTR CG4848 - chr3R 12214406 3` UTR CG4848 - chr3R 12214463 3` UTR CG4848 - chr3R_10_12210001 chr3R_12210001 RAL-93 1171 chr3R 12429816 12429840 chr3R 12429886 12429919 8 76 3.5 4.5 4.0 1.6 103 chr3R 12429816 exon CG5245 + chr3R 12429868 exon CG5245 + chr3R 12429919 exon CG5245 + chr3R_8_12425001 chr3R_12425001 RAL-93 1172 chr3R 12599372 12599402 chr3R 12599453 12599485 12 81 2.5 3.5 3.0 3.0 113 chr3R 12599372 intergenic not near genes chr3R 12599428 intergenic not near genes chr3R 12599485 intergenic not near genes chr3R_12_12595001 chr3R_12595001 RAL-93 1173 chr3R 12725952 12725969 chr3R 12726054 12726074 8 100 2.5 2.0 2.2 2.5 122 chr3R 12725952 intergenic not near genes chr3R 12726013 intergenic not near genes chr3R 12726074 intergenic not near genes chr3R_8_12725001 chr3R_12725001 RAL-93 1174 chr3R 12733479 12733507 chr3R 12733556 12733584 8 76 2.0 3.5 2.8 2.1 105 chr3R 12733479 intergenic not near genes chr3R 12733532 intergenic not near genes chr3R 12733584 intergenic not near genes chr3R_8_12730001 chr3R_12730001 RAL-93 1175 chr3R 12763124 12763154 chr3R 12763201 12763231 5 77 1.0 0.5 0.8 2.8 107 chr3R 12763124 intron beat-Vc - chr3R 12763178 intron beat-Vc - chr3R 12763231 intron beat-Vc - chr3R_5_12760001 chr3R_12760001 RAL-93 1176 chr3R 12774646 12774665 chr3R 12774737 12774754 6 90 5.0 1.5 3.2 1.4 108 chr3R 12774646 intron beat-Vc - chr3R 12774700 intron beat-Vc - chr3R 12774754 intron beat-Vc - chr3R_6_12770001 chr3R_12770001 RAL-93 1177 chr3R 12880118 12880146 chr3R 12880194 12880222 7 76 3.5 1.5 2.5 2.0 104 chr3R 12880118 intergenic not near genes chr3R 12880170 intergenic not near genes chr3R 12880222 intergenic not near genes chr3R_7_12880001 chr3R_12880001 RAL-93 1178 chr3R 12902382 12902417 chr3R 12902463 12902498 11 80 1.0 2.5 1.8 3.9 116 chr3R 12902382 intergenic not near genes chr3R 12902440 intergenic not near genes chr3R 12902498 intergenic not near genes chr3R_11_12900001 chr3R_12900001 RAL-93 1179 chr3R 12920155 12920166 chr3R 12925358 12925368 copia 5 5201 5.0 2.5 3.8 1.0 5213 chr3R 12920155 intron beat-Vb + chr3R 12922762 intron beat-Vb + chr3R 12925368 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-93 1180 chr3R 12920168 12920181 chr3R 12925353 12925370 copia 5 5192 3.5 2.0 2.8 1.3 5202 chr3R 12920168 intron beat-Vb + chr3R 12922769 intron beat-Vb + chr3R 12925370 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-93 1181 chr3R 12937495 12937519 chr3R 12937846 12937870 7 351 3.0 0.0 1.5 2.8 375 chr3R 12937495 intergenic not near genes chr3R 12937682 intergenic not near genes chr3R 12937870 intergenic not near genes chr3R_7_12935001 chr3R_12935001 RAL-93 1182 chr3R 13018152 13018181 chr3R 13018231 13018260 11 78 1.5 1.5 1.5 4.4 108 chr3R 13018152 intron CtBP + chr3R 13018206 intron CtBP + chr3R 13018260 intron CtBP + chr3R_11_13015001 chr3R_13015001 RAL-93 1183 chr3R 13059964 13059970 chr3R 13060159 13060165 4 195 0.5 1.0 0.8 2.2 201 chr3R 13059964 intron sim + chr3R 13060064 intron sim + chr3R 13060165 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-93 1184 chr3R 13073979 13074005 chr3R 13074058 13074084 8 77 1.5 3.0 2.2 2.5 105 chr3R 13073979 intron sim + chr3R 13074032 intron sim + chr3R 13074084 exon sim + chr3R_8_13070001 chr3R_13070001 RAL-93 1185 chr3R 13075360 13075385 chr3R 13075441 13075466 4 81 1.5 1.0 1.2 1.8 106 chr3R 13075360 intron sim + chr3R 13075413 intron sim + chr3R 13075466 intron sim + chr3R_4_13075001 chr3R_13075001 RAL-93 1186 chr3R 13104419 13104420 chr3R 21907534 21907536 9 8803115 14.0 17.5 15.8 0.5 8803117 chr3R 13104419 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_9_17505001 chr3R_17505001 RAL-93 1187 chr3R 13120774 13120800 chr3R 13120849 13120877 11 74 4.5 5.0 4.8 1.9 103 chr3R 13120774 intron timeout + chr3R 13120826 intron timeout + chr3R 13120877 intron timeout + chr3R_11_13120001 chr3R_13120001 RAL-93 1188 chr3R 13135827 13135850 chr3R 13138002 13138025 pogo 7 2175 4.0 2.0 3.0 1.8 2198 chr3R 13135827 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136926 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138025 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13135001 chr3R_13135001 RAL-93 1189 chr3R 13143045 13143064 chr3R 13148620 13148639 mdg3 7 5567 5.0 4.0 4.5 1.3 5594 chr3R 13143045 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145842 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148639 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-93 1190 chr3R 13195953 13195982 chr3R 13196048 13196077 13 94 3.0 3.5 3.2 3.1 124 chr3R 13195953 intergenic not near genes chr3R 13196015 intergenic not near genes chr3R 13196077 intergenic not near genes chr3R_13_13195001 chr3R_13195001 RAL-93 1191 chr3R 13248659 13248673 chr3R 13248758 13248772 4 99 3.0 1.5 2.2 1.2 113 chr3R 13248659 intron Ace - chr3R 13248716 intron Ace - chr3R 13248772 intron Ace - chr3R_4_13245001 chr3R_13245001 RAL-93 1192 chr3R 13314112 13314130 chr3R 13318888 13318918 Doc 6 4786 1.0 2.5 1.8 2.1 4806 chr3R 13314112 intergenic not near genes chr3R 13316515 intergenic not near genes chr3R 13318918 intergenic CG45080 - chr3R_6_13315001 chr3R_13315001 RAL-93 1193 chr3R 13558038 13558051 chr3R 13558124 13558138 6 86 4.0 7.0 5.5 0.9 100 chr3R 13558038 intergenic not near genes chr3R 13558088 intergenic not near genes chr3R 13558138 intergenic not near genes chr3R_6_13555001 chr3R_13555001 RAL-93 1194 chr3R 13569114 13569129 chr3R 13569198 13569233 7 97 3.5 2.0 2.8 1.8 119 chr3R 13569114 intergenic not near genes chr3R 13569174 intergenic not near genes chr3R 13569233 intergenic not near genes chr3R_7_13565001 chr3R_13565001 RAL-93 1195 chr3R 13659725 13659741 chr3R 13659831 13659847 4 106 0.0 0.0 0.0 4.0 122 chr3R 13659725 intron Hrb87F - chr3R 13659786 intron Hrb87F - chr3R 13659847 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-93 1196 chr3R 13693028 13693028 chr3R 21907534 21907536 16 8214507 4.5 17.5 11.0 1.3 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_16_17800001 chr3R_17800001 RAL-93 1197 chr3R 13828848 13828868 chr3R 13828934 13828954 4 86 2.5 0.5 1.5 1.6 106 chr3R 13828848 intergenic CR43300 + chr3R 13828901 intergenic CR43300 + chr3R 13828954 intergenic not near genes chr3R_4_13825001 chr3R_13825001 RAL-93 1198 chr3R 13850328 13850342 chr3R 13850410 13850430 5 85 0.0 4.5 2.2 1.6 102 chr3R 13850328 intergenic not near genes chr3R 13850379 intergenic not near genes chr3R 13850430 intergenic not near genes chr3R_5_13850001 chr3R_13850001 RAL-93 1199 chr3R 13851773 13851788 chr3R 13851863 13851864 4 86 5.0 5.0 5.0 0.7 91 chr3R 13851773 intergenic not near genes chr3R 13851818 intergenic not near genes chr3R 13851864 intergenic not near genes chr3R_4_13850001 chr3R_13850001 RAL-93 1200 chr3R 13863680 13863698 chr3R 13863767 13863786 7 87 2.0 3.5 2.8 1.8 106 chr3R 13863680 intergenic not near genes chr3R 13863733 intergenic not near genes chr3R 13863786 intergenic not near genes chr3R_7_13860001 chr3R_13860001 RAL-93 1201 chr3R 14021649 14021677 chr3R 14023466 14023494 S-element 9 1817 3.0 1.5 2.2 2.8 1845 chr3R 14021649 intron rdx - chr3R 14022572 intron rdx - chr3R 14023494 intron rdx - chr3R_9_14020001 chr3R_14020001 RAL-93 1202 chr3R 14117436 14117471 chr3R 14117512 14117546 4 76 0.5 2.0 1.2 1.8 110 chr3R 14117436 intron Kif19A - chr3R 14117491 intron Kif19A - chr3R 14117546 intron Kif19A - chr3R_4_14115001 chr3R_14115001 RAL-93 1203 chr3R 14350602 14350617 chr3R 14350682 14350695 4 80 2.5 0.0 1.2 1.8 93 chr3R 14350602 intron NK7.1 - chr3R 14350648 intron NK7.1 - chr3R 14350695 intron NK7.1 - chr3R_4_14350001 chr3R_14350001 RAL-93 1204 chr3R 14364064 14364091 chr3R 14364139 14364143 7 71 3.0 5.5 4.2 1.3 79 chr3R 14364064 intron NK7.1 - chr3R 14364104 intron NK7.1 - chr3R 14364143 intron NK7.1 - chr3R_7_14360001 chr3R_14360001 RAL-93 1205 chr3R 14458889 14458902 chr3R 14458970 14458983 6 80 0.5 1.0 0.8 3.3 94 chr3R 14458889 intron cv-c - chr3R 14458936 intron cv-c - chr3R 14458983 intron cv-c - chr3R_6_14455001 chr3R_14455001 RAL-93 1206 chr3R 14546039 14546070 chr3R 14546116 14546147 8 72 2.5 1.0 1.8 2.9 108 chr3R 14546039 intron Pde6 - chr3R 14546093 intron Pde6 - chr3R 14546147 intron Pde6 - chr3R_8_14545001 chr3R_14545001 RAL-93 1207 chr3R 14704383 14704410 chr3R 14704459 14704487 8 76 3.0 3.5 3.2 1.9 104 chr3R 14704383 intron kibra - chr3R 14704435 intron kibra - chr3R 14704487 intron kibra - chr3R_8_14700001 chr3R_14700001 RAL-93 1208 chr3R 14851471 14851500 chr3R 14851607 14851636 10 136 3.5 1.5 2.5 2.9 165 chr3R 14851471 intron btsz - chr3R 14851554 intron btsz - chr3R 14851636 intron btsz - chr3R_10_14850001 chr3R_14850001 RAL-93 1209 chr3R 14923726 14923748 chr3R 14923802 14923825 7 76 2.5 4.5 3.5 1.6 99 chr3R 14923726 3` UTR CR45598 - chr3R 14923776 intergenic CR45598 - chr3R 14923825 intergenic CR45598 - chr3R_7_14920001 chr3R_14920001 RAL-93 1210 chr3R 14940111 14940135 chr3R 14940244 14940269 4 134 1.5 1.5 1.5 1.6 158 chr3R 14940111 intergenic not near genes chr3R 14940190 intergenic not near genes chr3R 14940269 intergenic not near genes chr3R_4_14940001 chr3R_14940001 RAL-93 1211 chr3R 15002376 15002411 chr3R 15002475 15002510 11 97 0.5 1.0 0.8 6.1 134 chr3R 15002376 intergenic not near genes chr3R 15002443 intergenic not near genes chr3R 15002510 intergenic not near genes chr3R_11_15000001 chr3R_15000001 RAL-93 1212 chr3R 15010349 15010353 chr3R 15010569 15010593 4 235 2.5 0.5 1.5 1.6 244 chr3R 15010349 intergenic not near genes chr3R 15010471 intergenic not near genes chr3R 15010593 intergenic not near genes chr3R_4_15010001 chr3R_15010001 RAL-93 1213 chr3R 15059468 15059481 chr3R 15059555 15059568 5 87 0.0 2.5 1.2 2.3 100 chr3R 15059468 intron dpr9 - chr3R 15059518 intron dpr9 - chr3R 15059568 intron dpr9 - chr3R_5_15055001 chr3R_15055001 RAL-93 1214 chr3R 15079806 15079820 chr3R 15080047 15080061 pogo 5 241 0.0 2.0 1.0 2.5 255 chr3R 15079806 3` UTR CG6966 - chr3R 15079934 3` UTR CG6966 - chr3R 15080061 3` UTR CG6966 - chr3R_5_15075001 chr3R_15075001 RAL-93 1215 chr3R 15087407 15087439 chr3R 15087483 15087501 10 74 2.5 2.5 2.5 2.9 94 chr3R 15087407 intron CG6966 - chr3R 15087454 intron CG6966 - chr3R 15087501 intron CG6966 - chr3R_10_15085001 chr3R_15085001 RAL-93 1216 chr3R 15114915 15114935 chr3R 15114992 15115012 5 77 0.5 1.5 1.0 2.5 97 chr3R 15114915 intron CG42788 - chr3R 15114964 intron CG42788 - chr3R 15115012 intron CG42788 - chr3R_5_15110001 chr3R_15110001 RAL-93 1217 chr3R 15132063 15132086 chr3R 15135122 15135146 Juan 7 3057 3.0 4.5 3.8 1.5 3083 chr3R 15132063 intergenic CG42788 - chr3R 15133604 intergenic not near genes chr3R 15135146 3` UTR CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-93 1218 chr3R 15156610 15156635 chr3R 15156684 15156715 9 75 2.5 0.0 1.2 4.1 105 chr3R 15156610 intron Gyc88E + chr3R 15156662 intron Gyc88E + chr3R 15156715 intron Gyc88E + chr3R_9_15155001 chr3R_15155001 RAL-93 1219 chr3R 15162543 15162560 chr3R 15167311 15167327 F-element 4 4768 2.0 0.0 1.0 2.0 4784 chr3R 15162543 intron Gyc88E + chr3R 15164935 intron Gyc88E + chr3R 15167327 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-93 1220 chr3R 15257143 15257167 chr3R 15258243 15258271 10 1101 20.0 17.5 18.8 0.5 1128 chr3R 15257143 3` UTR CG42404 + chr3R 15257707 3` UTR CG42404 + chr3R 15258271 3` UTR eIF-2gamma - chr3R_10_15255001 chr3R_15255001 RAL-93 1221 chr3R 15286988 15286988 chr3R 21907534 21907536 4 6620547 17.0 17.5 17.2 0.2 6620548 chr3R 15286988 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-93 1222 chr3R 15419275 15419299 chr3R 15419392 15419415 7 116 4.5 2.0 3.2 1.7 140 chr3R 15419275 intergenic not near genes chr3R 15419345 intergenic not near genes chr3R 15419415 intergenic not near genes chr3R_7_15415001 chr3R_15415001 RAL-93 1223 chr3R 15426461 15426473 chr3R 15426570 15426582 4 108 2.5 2.5 2.5 1.1 121 chr3R 15426461 intron CG6118 - chr3R 15426522 intron CG6118 - chr3R 15426582 intron CG6118 - chr3R_4_15425001 chr3R_15425001 RAL-93 1224 chr3R 15499431 15499461 chr3R 15499521 15499554 11 92 3.5 5.0 4.2 2.1 123 chr3R 15499431 intergenic not near genes chr3R 15499492 intergenic not near genes chr3R 15499554 intergenic not near genes chr3R_11_15495001 chr3R_15495001 RAL-93 1225 chr3R 15601172 15601190 chr3R 15608693 15608712 412 4 7521 6.0 1.0 3.5 0.9 7540 chr3R 15601172 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608712 intergenic not near genes chr3R_4_15600001 chr3R_15600001 RAL-93 1226 chr3R 15618736 15618763 chr3R 15626209 15626237 blood 9 7474 0.5 4.5 2.5 2.6 7501 chr3R 15618736 intergenic not near genes chr3R 15622486 intergenic not near genes chr3R 15626237 intergenic not near genes chr3R_9_15620001 chr3R_15620001 RAL-93 1227 chr3R 15778725 15778750 chr3R 15778833 15778859 8 109 1.5 1.5 1.5 3.2 134 chr3R 15778725 intergenic not near genes chr3R 15778792 intergenic not near genes chr3R 15778859 intergenic not near genes chr3R_8_15775001 chr3R_15775001 RAL-93 1228 chr3R 15868947 15868963 chr3R 15869023 15869033 4 76 0.5 0.0 0.2 3.3 86 chr3R 15868947 intron CG31183 - chr3R 15868990 intron CG31183 - chr3R 15869033 intron CG31183 - chr3R_4_15865001 chr3R_15865001 RAL-93 1229 chr3R 15892652 15892680 chr3R 15892731 15892761 8 80 2.5 0.0 1.2 3.6 109 chr3R 15892652 intron CG14877 - chr3R 15892706 intron CG14877 - chr3R 15892761 intron CG14877 - chr3R_8_15890001 chr3R_15890001 RAL-93 1230 chr3R 15950162 15950193 chr3R 15950237 15950268 4 76 1.5 3.5 2.5 1.1 106 chr3R 15950162 intron Sap47 + chr3R 15950215 intron,3` UTR Sap47 +,CG31088 - chr3R 15950268 intron,exon Sap47 +,CG31088 - chr3R_4_15950001 chr3R_15950001 RAL-93 1231 chr3R 16011049 16011077 chr3R 16011168 16011196 7 118 1.0 1.0 1.0 3.5 147 chr3R 16011049 intron GATAe + chr3R 16011122 intron GATAe + chr3R 16011196 intron GATAe + chr3R_7_16010001 chr3R_16010001 RAL-93 1232 chr3R 16048860 16048882 chr3R 16048941 16048972 9 85 3.5 2.0 2.8 2.4 112 chr3R 16048860 intron ird5 - chr3R 16048916 intron ird5 - chr3R 16048972 intron ird5 - chr3R_9_16045001 chr3R_16045001 RAL-93 1233 chr3R 16214625 16214649 chr3R 16214717 16214741 7 92 7.0 4.0 5.5 1.1 116 chr3R 16214625 5` UTR CR45641 + chr3R 16214683 5` UTR CR45641 + chr3R 16214741 5` UTR CR45641 + chr3R_7_16210001 chr3R_16210001 RAL-93 1234 chr3R 16547162 16547192 chr3R 16547248 16547278 9 86 3.5 3.0 3.2 2.1 116 chr3R 16547162 intron CG42342 + chr3R 16547220 intron CG42342 + chr3R 16547278 intron CG42342 + chr3R_9_16545001 chr3R_16545001 RAL-93 1235 chr3R 16756319 16756354 chr3R 16762509 16762544 diver 9 6190 2.0 2.5 2.2 2.8 6225 chr3R 16756319 intron bxd - chr3R 16759432 intron bxd - chr3R 16762544 intron bxd - chr3R_9_16755001 chr3R_16755001 RAL-93 1236 chr3R 16787748 16787780 chr3R 16787826 16787858 11 78 1.5 4.0 2.8 2.9 110 chr3R 16787748 intergenic not near genes chr3R 16787803 intergenic not near genes chr3R 16787858 intergenic Glut3 + chr3R_11_16785001 chr3R_16785001 RAL-93 1237 chr3R 16836963 16836986 chr3R 16837291 16837315 6 329 1.0 2.5 1.8 2.1 352 chr3R 16836963 intron iab-8 - chr3R 16837139 intron iab-8 - chr3R 16837315 intron iab-8 - chr3R_6_16835001 chr3R_16835001 RAL-93 1238 chr3R 16961198 16961232 chr3R 16961287 16961318 8 88 0.0 3.0 1.5 3.2 120 chr3R 16961198 intron Abd-B - chr3R 16961258 intron Abd-B - chr3R 16961318 intron Abd-B - chr3R_8_16960001 chr3R_16960001 RAL-93 1239 chr3R 17065572 17065598 chr3R 17065845 17065872 8 273 0.5 1.5 1.0 4.0 300 chr3R 17065572 intron Dad + chr3R 17065722 intron Dad + chr3R 17065872 intron Dad + chr3R_8_17065001 chr3R_17065001 RAL-93 1240 chr3R 17121524 17121556 chr3R 17121718 17121751 4 195 0.0 0.0 0.0 4.0 227 chr3R 17121524 intron cher - chr3R 17121638 intron,exon cher -,CG42779 + chr3R 17121751 intron,exon cher -,CG42779 + chr3R_4_17120001 chr3R_17120001 RAL-93 1241 chr3R 17144024 17144054 chr3R 17144112 17144142 12 88 0.5 3.0 1.8 4.3 118 chr3R 17144024 intergenic m-cup - chr3R 17144083 intergenic m-cup - chr3R 17144142 intergenic m-cup - chr3R_12_17140001 chr3R_17140001 RAL-93 1242 chr3R 17294681 17294702 chr3R 17295109 17295130 BS 5 428 3.0 6.0 4.5 0.9 449 chr3R 17294681 intergenic not near genes chr3R 17294906 intergenic not near genes chr3R 17295130 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-93 1243 chr3R 17346681 17346720 chr3R 17348244 17348283 F-element 6 1563 1.0 1.5 1.2 2.7 1602 chr3R 17346681 intron beat-IIa - chr3R 17347482 intron beat-IIa - chr3R 17348283 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-93 1244 chr3R 17355510 17355521 chr3R 17355587 17355599 4 78 1.5 4.0 2.8 1.1 89 chr3R 17355510 intron beat-IIa - chr3R 17355554 intron beat-IIa - chr3R 17355599 intron beat-IIa - chr3R_4_17355001 chr3R_17355001 RAL-93 1245 chr3R 17432825 17432849 chr3R 17433005 17433029 8 180 2.0 3.0 2.5 2.3 204 chr3R 17432825 intron CG5873 + chr3R 17432927 intron CG5873 + chr3R 17433029 intron CG5873 + chr3R_8_17430001 chr3R_17430001 RAL-93 1246 chr3R 17521581 17521589 chr3R 17521721 17521748 6 154 1.5 4.5 3.0 1.5 167 chr3R 17521581 intergenic not near genes chr3R 17521664 intergenic not near genes chr3R 17521748 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-93 1247 chr3R 17524924 17524930 chr3R 17525002 17525010 5 79 0.0 4.0 2.0 1.7 86 chr3R 17524924 intergenic not near genes chr3R 17524967 intergenic not near genes chr3R 17525010 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-93 1248 chr3R 17563923 17563957 chr3R 17564025 17564059 8 102 0.5 3.5 2.0 2.7 136 chr3R 17563923 intron Hmx + chr3R 17563991 intron Hmx + chr3R 17564059 intron Hmx + chr3R_8_17560001 chr3R_17560001 RAL-93 1249 chr3R 17591287 17591321 chr3R 17591723 17591755 F-element 5 430 2.0 6.0 4.0 1.0 468 chr3R 17591287 intergenic not near genes chr3R 17591521 intergenic not near genes chr3R 17591755 intergenic not near genes chr3R_5_17590001 chr3R_17590001 RAL-93 1250 chr3R 17797863 17797888 chr3R 17800073 17800097 10 2210 28.0 28.0 28.0 0.3 2234 chr3R 17797863 exon CG7379 - chr3R 17798980 3` UTR CG17803 - chr3R 17800097 exon CG17803 - chr3R_10_17795001 chr3R_17795001 RAL-93 1251 chr3R 17823209 17823234 chr3R 17823294 17823316 4 84 1.0 1.5 1.2 1.8 107 chr3R 17823209 intron tinc + chr3R 17823262 intron tinc + chr3R 17823316 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-93 1252 chr3R 17869342 17869364 chr3R 17869662 17869691 7 325 5.0 4.5 4.8 1.2 349 chr3R 17869342 intron tinc + chr3R 17869516 intron tinc + chr3R 17869691 intron tinc + chr3R_7_17865001 chr3R_17865001 RAL-93 1253 chr3R 17925853 17925888 chr3R 17927320 17927355 hobo 18 1465 2.5 8.0 5.2 2.9 1502 chr3R 17925853 intron cpo + chr3R 17926604 intron cpo + chr3R 17927355 intron cpo + chr3R_18_17925001 chr3R_17925001 RAL-93 1254 chr3R 18075681 18075715 chr3R 18075827 18075860 6 146 0.5 3.5 2.0 2.0 179 chr3R 18075681 intergenic not near genes chr3R 18075770 intergenic not near genes chr3R 18075860 intergenic not near genes chr3R_6_18075001 chr3R_18075001 RAL-93 1255 chr3R 18086951 18086962 chr3R 18087060 18087071 4 109 4.0 3.5 3.8 0.8 120 chr3R 18086951 intergenic not near genes chr3R 18087011 intergenic not near genes chr3R 18087071 intergenic not near genes chr3R_4_18085001 chr3R_18085001 RAL-93 1256 chr3R 18087872 18087880 chr3R 18088647 18088656 4 776 2.0 4.0 3.0 1.0 784 chr3R 18087872 intergenic not near genes chr3R 18088264 intergenic not near genes chr3R 18088656 intergenic not near genes chr3R_4_18085001 chr3R_18085001 RAL-93 1257 chr3R 18140442 18140473 chr3R 18140520 18140551 6 77 4.0 1.5 2.8 1.6 109 chr3R 18140442 intergenic not near genes chr3R 18140496 intergenic not near genes chr3R 18140551 intergenic not near genes chr3R_6_18140001 chr3R_18140001 RAL-93 1258 chr3R 18339004 18339017 chr3R 18339108 18339121 5 104 0.0 1.5 0.8 2.8 117 chr3R 18339004 intron CG15803 - chr3R 18339062 intron CG15803 - chr3R 18339121 intron CG15803 - chr3R_5_18335001 chr3R_18335001 RAL-93 1259 chr3R 18342014 18342037 chr3R 18342092 18342112 7 72 5.5 2.0 3.8 1.5 98 chr3R 18342014 intron CG15803 - chr3R 18342063 intron CG15803 - chr3R 18342112 intron CG15803 - chr3R_7_18340001 chr3R_18340001 RAL-93 1260 chr3R 18379633 18379653 chr3R 18379935 18379959 9 305 2.0 2.5 2.2 2.8 326 chr3R 18379633 intron CG7675 - chr3R 18379796 intron CG7675 - chr3R 18379959 intron CG7675 - chr3R_9_18375001 chr3R_18375001 RAL-93 1261 chr3R 18501591 18501627 chr3R 18501672 18501708 5 81 1.5 1.5 1.5 2.0 117 chr3R 18501591 intron fru - chr3R 18501650 intron fru - chr3R 18501708 intron fru - chr3R_5_18500001 chr3R_18500001 RAL-93 1262 chr3R 18508605 18508616 chr3R 18508680 18508705 8 83 0.0 6.5 3.2 1.9 100 chr3R 18508605 intron fru - chr3R 18508655 intron fru - chr3R 18508705 intron fru - chr3R_8_18505001 chr3R_18505001 RAL-93 1263 chr3R 18528367 18528383 chr3R 18528452 18528470 6 87 3.5 0.5 2.0 2.0 103 chr3R 18528367 intron fru - chr3R 18528418 intron fru - chr3R 18528470 intron fru - chr3R_6_18525001 chr3R_18525001 RAL-93 1264 chr3R 18618273 18618293 chr3R 18618357 18618359 5 81 1.5 1.0 1.2 2.3 86 chr3R 18618273 intron,intron qin +,CG14304 - chr3R 18618316 intron,intron qin +,CG14304 - chr3R 18618359 intron,intron qin +,CG14304 - chr3R_5_18615001 chr3R_18615001 RAL-93 1265 chr3R 18622779 18622806 chr3R 18622854 18622882 9 74 4.5 0.5 2.5 2.6 103 chr3R 18622779 intron qin + chr3R 18622830 intron qin + chr3R 18622882 intron qin + chr3R_9_18620001 chr3R_18620001 RAL-93 1266 chr3R 18695761 18695773 chr3R 18695845 18695857 5 84 2.5 0.0 1.2 2.3 96 chr3R 18695761 3` UTR CG34282 + chr3R 18695809 intergenic CG34282 + chr3R 18695857 intergenic CG34282 + chr3R_5_18695001 chr3R_18695001 RAL-93 1267 chr3R 18766777 18766807 chr3R 18766855 18766883 6 78 1.5 2.5 2.0 2.0 106 chr3R 18766777 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766883 intron CG7720 - chr3R_6_18765001 chr3R_18765001 RAL-93 1268 chr3R 18781702 18781725 chr3R 18781777 18781801 5 72 2.0 4.5 3.2 1.2 99 chr3R 18781702 intron CG7720 - chr3R 18781752 intron CG7720 - chr3R 18781801 intron CG7720 - chr3R_5_18780001 chr3R_18780001 RAL-93 1269 chr3R 18812075 18812107 chr3R 18812152 18812185 9 77 3.5 3.0 3.2 2.1 110 chr3R 18812075 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-93 1270 chr3R 18856333 18856367 chr3R 18856623 18856656 9 288 4.5 2.5 3.5 2.0 323 chr3R 18856333 intergenic not near genes chr3R 18856494 intergenic not near genes chr3R 18856656 intergenic not near genes chr3R_9_18855001 chr3R_18855001 RAL-93 1271 chr3R 18885933 18885964 chr3R 18886014 18886045 13 79 1.0 1.0 1.0 6.5 112 chr3R 18885933 intergenic not near genes chr3R 18885989 intergenic not near genes chr3R 18886045 intergenic not near genes chr3R_13_18885001 chr3R_18885001 RAL-93 1272 chr3R 18932556 18932586 chr3R 18932731 18932737 7 170 1.0 0.5 0.8 3.9 181 chr3R 18932556 intron CG42613 + chr3R 18932646 intron CG42613 + chr3R 18932737 intron CG42613 + chr3R_7_18930001 chr3R_18930001 RAL-93 1273 chr3R 19113003 19113031 chr3R 19113108 19113137 5 106 2.0 1.5 1.8 1.8 134 chr3R 19113003 intron CG6040 + chr3R 19113070 intron CG6040 + chr3R 19113137 intron CG6040 + chr3R_5_19110001 chr3R_19110001 RAL-93 1274 chr3R 19340397 19340428 chr3R 19340474 19340505 9 77 2.0 2.0 2.0 3.0 108 chr3R 19340397 intergenic not near genes chr3R 19340451 intergenic not near genes chr3R 19340505 intergenic not near genes chr3R_9_19340001 chr3R_19340001 RAL-93 1275 chr3R 19533291 19533304 chr3R 19533371 19533383 6 80 3.5 1.0 2.2 1.9 92 chr3R 19533291 intron Dys + chr3R 19533337 intron Dys + chr3R 19533383 intron Dys + chr3R_6_19530001 chr3R_19530001 RAL-93 1276 chr3R 19702335 19702355 chr3R 19702414 19702437 11 81 1.0 4.5 2.8 2.9 102 chr3R 19702335 intergenic not near genes chr3R 19702386 intergenic not near genes chr3R 19702437 intergenic not near genes chr3R_11_19700001 chr3R_19700001 RAL-93 1277 chr3R 19716214 19716241 chr3R 19716291 19716318 7 77 0.0 0.0 0.0 7.0 104 chr3R 19716214 intergenic CG34286 - chr3R 19716266 intergenic CG34286 - chr3R 19716318 intergenic CG34286 - chr3R_7_19715001 chr3R_19715001 RAL-93 1278 chr3R 19755434 19755456 chr3R 19755527 19755549 6 93 2.0 5.0 3.5 1.3 115 chr3R 19755434 intron GluClalpha + chr3R 19755492 intron GluClalpha + chr3R 19755549 intron GluClalpha + chr3R_6_19755001 chr3R_19755001 RAL-93 1279 chr3R 19783028 19783041 chr3R 19783145 19783158 4 117 3.5 2.5 3.0 1.0 130 chr3R 19783028 exon CG11407 + chr3R 19783093 3` UTR CG11407 + chr3R 19783158 intergenic CG11407 +,CG11453 + chr3R_4_19780001 chr3R_19780001 RAL-93 1280 chr3R 19908274 19908305 chr3R 19908355 19908389 5 83 0.0 2.5 1.2 2.3 115 chr3R 19908274 intron RhoGAP92B + chr3R 19908332 intron RhoGAP92B + chr3R 19908389 intron RhoGAP92B + chr3R_5_19905001 chr3R_19905001 RAL-93 1281 chr3R 20033137 20033169 chr3R 20033242 20033274 14 105 3.5 1.5 2.5 4.0 137 chr3R 20033137 exon CG4936 + chr3R 20033206 intron CG4936 + chr3R 20033274 intron CG4936 + chr3R_14_20030001 chr3R_20030001 RAL-93 1282 chr3R 20060630 20060654 chr3R 20060713 20060736 7 81 2.5 2.0 2.2 2.2 106 chr3R 20060630 intergenic not near genes chr3R 20060683 intergenic not near genes chr3R 20060736 intergenic not near genes chr3R_7_20060001 chr3R_20060001 RAL-93 1283 chr3R 20109542 20109570 chr3R 20114748 20114766 copia 4 5204 0.5 4.0 2.2 1.2 5224 chr3R 20109542 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114766 intergenic CG10887 + chr3R_4_20110001 chr3R_20110001 RAL-93 1284 chr3R 20156706 20156721 chr3R 20165861 20165891 roo 6 9167 2.5 3.0 2.8 1.6 9185 chr3R 20156706 intergenic not near genes chr3R 20161298 intergenic not near genes chr3R 20165891 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-93 1285 chr3R 20266517 20266548 chr3R 20272988 20273019 Burdock 6 6471 0.5 3.0 1.8 2.1 6502 chr3R 20266517 intron cic + chr3R 20269768 intron cic + chr3R 20273019 intron cic + chr3R_6_20265001 chr3R_20265001 RAL-93 1286 chr3R 20282287 20282309 chr3R 20282363 20282383 4 76 0.0 1.0 0.5 2.7 96 chr3R 20282287 intron cic + chr3R 20282335 intron cic + chr3R 20282383 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-93 1287 chr3R 20330615 20330639 chr3R 20330707 20330717 9 90 6.0 0.5 3.2 2.1 102 chr3R 20330615 3` UTR Sirt2 + chr3R 20330666 3` UTR Sirt2 + chr3R 20330717 3` UTR Sirt2 + chr3R_9_20330001 chr3R_20330001 RAL-93 1288 chr3R 20391754 20391763 chr3R 20391847 20391859 4 93 2.0 3.5 2.8 1.1 105 chr3R 20391754 intron Gfrl - chr3R 20391806 intron Gfrl - chr3R 20391859 intron Gfrl - chr3R_4_20390001 chr3R_20390001 RAL-93 1289 chr3R 20467089 20467103 chr3R 20467150 20467178 6 72 5.0 1.5 3.2 1.4 89 chr3R 20467089 intron Gfrl - chr3R 20467134 intron Gfrl - chr3R 20467178 intron Gfrl - chr3R_6_20465001 chr3R_20465001 RAL-93 1290 chr3R 20602593 20602625 chr3R 20602678 20602710 7 85 2.5 3.5 3.0 1.8 117 chr3R 20602593 intron bon + chr3R 20602652 intron bon + chr3R 20602710 intron bon + chr3R_7_20600001 chr3R_20600001 RAL-93 1291 chr3R 20703492 20703512 chr3R 20703885 20703906 4 393 0.5 1.5 1.0 2.0 414 chr3R 20703492 intron Oamb - chr3R 20703699 intron Oamb - chr3R 20703906 intron Oamb - chr3R_4_20700001 chr3R_20700001 RAL-93 1292 chr3R 20707747 20707762 chr3R 20707962 20707977 8 215 2.5 0.5 1.5 3.2 230 chr3R 20707747 intron Oamb - chr3R 20707862 intron Oamb - chr3R 20707977 intron Oamb - chr3R_8_20705001 chr3R_20705001 RAL-93 1293 chr3R 20716807 20716843 chr3R 20717144 20717180 15 336 3.5 2.0 2.8 3.9 373 chr3R 20716807 intergenic not near genes chr3R 20716994 intergenic not near genes chr3R 20717180 intergenic not near genes chr3R_15_20715001 chr3R_20715001 RAL-93 1294 chr3R 20733764 20733798 chr3R 20733856 20733890 11 91 3.5 2.0 2.8 2.9 126 chr3R 20733764 intergenic not near genes chr3R 20733827 intergenic not near genes chr3R 20733890 intergenic not near genes chr3R_11_20730001 chr3R_20730001 RAL-93 1295 chr3R 20764411 20764440 chr3R 20764506 20764536 9 95 3.5 1.5 2.5 2.6 125 chr3R 20764411 intron Syp + chr3R 20764474 intron Syp + chr3R 20764536 intron Syp + chr3R_9_20760001 chr3R_20760001 RAL-93 1296 chr3R 20870249 20870284 chr3R 20870334 20870369 12 84 1.5 4.0 2.8 3.2 120 chr3R 20870249 intergenic not near genes chr3R 20870309 intergenic not near genes chr3R 20870369 intergenic not near genes chr3R_12_20870001 chr3R_20870001 RAL-93 1297 chr3R 20901345 20901376 chr3R 20901431 20901462 11 84 1.5 4.0 2.8 2.9 117 chr3R 20901345 intergenic not near genes chr3R 20901404 intergenic not near genes chr3R 20901462 intergenic CG5621 + chr3R_11_20900001 chr3R_20900001 RAL-93 1298 chr3R 20938905 20938939 chr3R 20938992 20939026 13 82 6.5 7.0 6.8 1.7 121 chr3R 20938905 intron CG31191 - chr3R 20938966 intron CG31191 - chr3R 20939026 intron CG31191 - chr3R_13_20935001 chr3R_20935001 RAL-93 1299 chr3R 20942815 20942840 chr3R 20942891 20942916 12 76 2.0 3.0 2.5 3.4 101 chr3R 20942815 intron CG31191 - chr3R 20942866 intron CG31191 - chr3R 20942916 intron CG31191 - chr3R_12_20940001 chr3R_20940001 RAL-93 1300 chr3R 20994953 20994981 chr3R 20995038 20995060 6 82 1.0 7.0 4.0 1.2 107 chr3R 20994953 intron Calx + chr3R 20995006 intron Calx + chr3R 20995060 intron Calx + chr3R_6_20995001 chr3R_20995001 RAL-93 1301 chr3R 21007614 21007634 chr3R 21007691 21007714 5 77 4.0 4.5 4.2 1.0 100 chr3R 21007614 intron Calx + chr3R 21007664 intron Calx + chr3R 21007714 intron Calx + chr3R_5_21005001 chr3R_21005001 RAL-93 1302 chr3R 21014011 21014036 chr3R 21014089 21014114 5 77 2.0 2.0 2.0 1.7 103 chr3R 21014011 3` UTR Calx + chr3R 21014062 3` UTR Calx + chr3R 21014114 3` UTR Calx + chr3R_5_21010001 chr3R_21010001 RAL-93 1303 chr3R 21108053 21108060 chr3R 21108314 21108321 4 261 1.5 3.0 2.2 1.2 268 chr3R 21108053 intergenic Sec15 -,rtet + chr3R 21108187 intergenic Sec15 -,rtet + chr3R 21108321 intergenic rtet +,Sec15 - chr3R_4_21105001 chr3R_21105001 RAL-93 1304 chr3R 21141673 21141706 chr3R 21150154 21150173 Tirant 9 8474 5.5 4.0 4.8 1.6 8500 chr3R 21141673 intron SNF4Agamma + chr3R 21145923 intron SNF4Agamma + chr3R 21150173 intron SNF4Agamma + chr3R_9_21145001 chr3R_21145001 RAL-93 1305 chr3R 21163252 21163275 chr3R 21163330 21163353 7 77 3.0 2.0 2.5 2.0 101 chr3R 21163252 intron SNF4Agamma + chr3R 21163302 intron SNF4Agamma + chr3R 21163353 intron SNF4Agamma + chr3R_7_21160001 chr3R_21160001 RAL-93 1306 chr3R 21176808 21176840 chr3R 21176891 21176923 7 83 4.0 2.0 3.0 1.8 115 chr3R 21176808 intron SNF4Agamma + chr3R 21176866 intron SNF4Agamma + chr3R 21176923 intron SNF4Agamma + chr3R_7_21175001 chr3R_21175001 RAL-93 1307 chr3R 21188384 21188413 chr3R 21188466 21188495 8 80 1.5 1.0 1.2 3.6 111 chr3R 21188384 intron SNF4Agamma + chr3R 21188440 intron SNF4Agamma + chr3R 21188495 intron SNF4Agamma + chr3R_8_21185001 chr3R_21185001 RAL-93 1308 chr3R 21252712 21252726 chr3R 21252794 21252825 8 93 0.0 5.5 2.8 2.1 113 chr3R 21252712 intron ETHR + chr3R 21252768 intron ETHR + chr3R 21252825 intron ETHR + chr3R_8_21250001 chr3R_21250001 RAL-93 1309 chr3R 21385700 21385957 chr3R 21385782 21386034 6 77 3.5 0.0 1.8 2.1 334 chr3R 21385700 intergenic not near genes chr3R 21385867 intergenic not near genes chr3R 21386034 intergenic not near genes chr3R_6_21385001 chr3R_21385001 RAL-93 1310 chr3R 21472017 21472022 chr3R 21472097 21472103 4 80 3.0 3.0 3.0 1.0 86 chr3R 21472017 intergenic not near genes chr3R 21472060 intergenic not near genes chr3R 21472103 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-93 1311 chr3R 21624102 21624121 chr3R 21624196 21624215 11 94 2.0 4.0 3.0 2.8 113 chr3R 21624102 intron E2f - chr3R 21624158 intron E2f - chr3R 21624215 intron E2f - chr3R_11_21620001 chr3R_21620001 RAL-93 1312 chr3R 21734870 21734886 chr3R 21734945 21734962 4 76 3.5 0.0 1.8 1.4 92 chr3R 21734870 intergenic not near genes chr3R 21734916 intergenic not near genes chr3R 21734962 intergenic not near genes chr3R_4_21730001 chr3R_21730001 RAL-93 1313 chr3R 21761133 21761154 chr3R 21768519 21768543 mdg1 7 7389 3.0 5.5 4.2 1.3 7410 chr3R 21761133 exon CG42335 + chr3R 21764838 intron CG42335 + chr3R 21768543 exon CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-93 1314 chr3R 21784861 21784890 chr3R 21784959 21784968 5 94 3.0 0.0 1.5 2.0 107 chr3R 21784861 3` UTR,3` UTR CASK -,CRG - chr3R 21784914 3` UTR,3` UTR CASK -,CRG - chr3R 21784968 3` UTR,3` UTR CASK -,CRG - chr3R_5_21780001 chr3R_21780001 RAL-93 1315 chr3R 21820463 21820491 chr3R 21820565 21820598 8 100 1.0 4.0 2.5 2.3 135 chr3R 21820463 intron CASK - chr3R 21820530 intron CASK - chr3R 21820598 intron CASK - chr3R_8_21820001 chr3R_21820001 RAL-93 1316 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 7.0 17.5 12.2 0.3 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-93 1317 chr3R 21907534 21907534 chr3R 28831801 28831802 9 6924268 19.0 18.5 18.8 0.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_9_25365001 chr3R_25365001 RAL-93 1318 chr3R 8339246 8339247 chr3R 21907535 21907535 5 13568288 17.5 17.5 17.5 0.3 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-93 1319 chr3R 21907535 21907535 chr3R 28831801 28831802 15 6924266 18.5 18.5 18.5 0.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_15_25365001 chr3R_25365001 RAL-93 1320 chr3R 21907536 21907536 chr3R 28831801 28831802 20 6924266 18.5 18.5 18.5 1.0 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_20_25365001 chr3R_25365001 RAL-93 1321 chr3R 21983138 21983168 chr3R 21983219 21983248 6 80 3.0 2.5 2.8 1.6 110 chr3R 21983138 intron Eip93F + chr3R 21983193 intron Eip93F + chr3R 21983248 intron Eip93F + chr3R_6_21980001 chr3R_21980001 RAL-93 1322 chr3R 22108370 22108383 chr3R 22108602 22108615 5 231 3.5 7.5 5.5 0.8 245 chr3R 22108370 intron CG5778 - chr3R 22108492 intron CG5778 - chr3R 22108615 intron CG5778 - chr3R_5_22105001 chr3R_22105001 RAL-93 1323 chr3R 22153580 22153600 chr3R 22153660 22153680 8 80 4.0 5.0 4.5 1.5 100 chr3R 22153580 intron SKIP + chr3R 22153630 intron SKIP + chr3R 22153680 intron SKIP + chr3R_8_22150001 chr3R_22150001 RAL-93 1324 chr3R 22190840 22190854 chr3R 22190917 22190932 6 78 2.5 6.0 4.2 1.2 92 chr3R 22190840 intron SKIP + chr3R 22190886 intron SKIP + chr3R 22190932 intron SKIP + chr3R_6_22190001 chr3R_22190001 RAL-93 1325 chr3R 22283116 22283130 chr3R 22283203 22283209 7 86 0.0 3.0 1.5 2.8 93 chr3R 22283116 intron SKIP + chr3R 22283162 intron SKIP + chr3R 22283209 intron SKIP + chr3R_7_22280001 chr3R_22280001 RAL-93 1326 chr3R 22302354 22302375 chr3R 22302440 22302461 5 86 1.5 1.5 1.5 2.0 107 chr3R 22302354 intron CG7084 + chr3R 22302408 intron CG7084 + chr3R 22302461 intron CG7084 + chr3R_5_22300001 chr3R_22300001 RAL-93 1327 chr3R 22318971 22318999 chr3R 22319047 22319075 14 73 2.0 3.0 2.5 4.0 104 chr3R 22318971 5` UTR CG34377 - chr3R 22319023 intron CG34377 - chr3R 22319075 intron CG34377 - chr3R_14_22315001 chr3R_22315001 RAL-93 1328 chr3R 22428578 22428608 chr3R 22428653 22428681 11 75 0.5 2.0 1.2 5.0 103 chr3R 22428578 intron CG13847 - chr3R 22428630 intron CG13847 - chr3R 22428681 intron CG13847 - chr3R_11_22425001 chr3R_22425001 RAL-93 1329 chr3R 22450541 22450576 chr3R 22453181 22453214 NOF 15 2639 3.0 3.5 3.2 3.6 2673 chr3R 22450541 intron CG34376 + chr3R 22451878 intron CG34376 + chr3R 22453214 intron CG34376 + chr3R_15_22450001 chr3R_22450001 RAL-93 1330 chr3R 22538444 22538472 chr3R 22538526 22538557 10 85 5.0 3.0 4.0 2.0 113 chr3R 22538444 intron CG5326 - chr3R 22538500 intron CG5326 - chr3R 22538557 intron CG5326 - chr3R_10_22535001 chr3R_22535001 RAL-93 1331 chr3R 22797781 22797926 chr3R 22797844 22798022 9 89 0.0 0.0 0.0 9.0 241 chr3R 22797781 intergenic not near genes chr3R 22797902 intergenic not near genes chr3R 22798022 intergenic not near genes chr3R_9_22795001 chr3R_22795001 RAL-93 1332 chr3R 22803442 22803468 chr3R 22803632 22803656 13 189 2.5 3.5 3.0 3.2 214 chr3R 22803442 intergenic not near genes chr3R 22803549 intergenic not near genes chr3R 22803656 intergenic not near genes chr3R_13_22800001 chr3R_22800001 RAL-93 1333 chr3R 22827416 22827447 chr3R 22827489 22827523 6 73 2.5 3.0 2.8 1.6 107 chr3R 22827416 intergenic CR44350 - chr3R 22827470 intergenic CR44350 - chr3R 22827523 intergenic CR44350 - chr3R_6_22825001 chr3R_22825001 RAL-93 1334 chr3R 22881193 22881220 chr3R 22884899 22884926 Doc 6 3706 1.0 1.0 1.0 3.0 3733 chr3R 22881193 intergenic not near genes chr3R 22883060 intergenic not near genes chr3R 22884926 intergenic not near genes chr3R_6_22880001 chr3R_22880001 RAL-93 1335 chr3R 22886430 22886442 chr3R 22887602 22887614 5 1171 2.0 4.5 3.2 1.2 1184 chr3R 22886430 intergenic not near genes chr3R 22887022 intergenic not near genes chr3R 22887614 intergenic not near genes chr3R_5_22885001 chr3R_22885001 RAL-93 1336 chr3R 22953615 22953642 chr3R 22953982 22954008 6 365 3.5 4.0 3.8 1.2 393 chr3R 22953615 intron klg + chr3R 22953812 intron klg + chr3R 22954008 intron klg + chr3R_6_22950001 chr3R_22950001 RAL-93 1337 chr3R 23077306 23077337 chr3R 23077402 23077410 6 92 0.5 5.0 2.8 1.6 104 chr3R 23077306 intron CG13830 - chr3R 23077358 intron CG13830 - chr3R 23077410 intron CG13830 - chr3R_6_23075001 chr3R_23075001 RAL-93 1338 chr3R 23101392 23101398 chr3R 23101481 23101484 4 90 3.0 5.0 4.0 0.8 92 chr3R 23101392 intron CG13830 - chr3R 23101438 intron CG13830 - chr3R 23101484 intron CG13830 - chr3R_4_23100001 chr3R_23100001 RAL-93 1339 chr3R 23110880 23110910 chr3R 23111046 23111076 8 166 0.5 1.5 1.0 4.0 196 chr3R 23110880 intron CG13830 - chr3R 23110978 intron CG13830 - chr3R 23111076 intron CG13830 - chr3R_8_23110001 chr3R_23110001 RAL-93 1340 chr3R 23239266 23239279 chr3R 23239360 23239374 5 95 3.0 6.5 4.8 0.9 108 chr3R 23239266 intron CG4467 - chr3R 23239320 intron CG4467 - chr3R 23239374 intron CG4467 - chr3R_5_23235001 chr3R_23235001 RAL-93 1341 chr3R 23338895 23338915 chr3R 23338970 23338975 6 70 4.0 1.5 2.8 1.6 80 chr3R 23338895 intron pnt - chr3R 23338935 intron pnt - chr3R 23338975 intron pnt - chr3R_6_23335001 chr3R_23335001 RAL-93 1342 chr3R 23389949 23389983 chr3R 23390027 23390058 11 78 3.5 3.5 3.5 2.4 109 chr3R 23389949 intergenic CR43387 + chr3R 23390004 intergenic CR43387 + chr3R 23390058 intergenic CR43387 + chr3R_11_23390001 chr3R_23390001 RAL-93 1343 chr3R 23413111 23413138 chr3R 23413199 23413226 8 86 3.0 4.0 3.5 1.8 115 chr3R 23413111 intron CG4374 - chr3R 23413168 intron CG4374 - chr3R 23413226 intron CG4374 - chr3R_8_23410001 chr3R_23410001 RAL-93 1344 chr3R 23540796 23540813 chr3R 23540885 23540901 7 90 1.5 5.0 3.2 1.7 105 chr3R 23540796 intergenic not near genes chr3R 23540848 intergenic not near genes chr3R 23540901 intergenic not near genes chr3R_7_23540001 chr3R_23540001 RAL-93 1345 chr3R 23558401 23558426 chr3R 23560182 23560207 Bari1 7 1781 1.0 2.0 1.5 2.8 1806 chr3R 23558401 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560207 intron beat-IV + chr3R_7_23555001 chr3R_23555001 RAL-93 1346 chr3R 23590025 23590054 chr3R 23590123 23590152 7 98 3.0 2.0 2.5 2.0 127 chr3R 23590025 intergenic CG33337 -,CG10182 - chr3R 23590088 intergenic CG33337 -,CG10182 - chr3R 23590152 exon CG33337 - chr3R_7_23590001 chr3R_23590001 RAL-93 1347 chr3R 23678539 23678572 chr3R 23678855 23678886 27 315 13.5 15.0 14.2 1.8 347 chr3R 23678539 intergenic CG13822 +,CG10157 + chr3R 23678712 intergenic CG10157 +,CG13822 + chr3R 23678886 intergenic CG10157 +,CG13822 + chr3R_27_23675001 chr3R_23675001 RAL-93 1348 chr3R 23677812 23677839 chr3R 23684147 23684174 21 6336 39.0 24.0 31.5 0.6 6362 chr3R 23677812 intron CG13822 + chr3R 23680993 exon eIF-3p66 + chr3R 23684174 intron CG18754 + chr3R_21_23680001 chr3R_23680001 RAL-93 1349 chr3R 23944919 23944936 chr3R 23945003 23945021 7 84 2.0 5.0 3.5 1.6 102 chr3R 23944919 intron CG12268 - chr3R 23944970 intron CG12268 - chr3R 23945021 exon CG12268 - chr3R_7_23940001 chr3R_23940001 RAL-93 1350 chr3R 23949043 23949069 chr3R 23949117 23949146 5 76 2.0 0.5 1.2 2.3 103 chr3R 23949043 intergenic not near genes chr3R 23949094 intergenic not near genes chr3R 23949146 intergenic not near genes chr3R_5_23945001 chr3R_23945001 RAL-93 1351 chr3R 24072092 24072114 chr3R 24072525 24072526 jockey 9 431 4.5 0.0 2.2 2.8 434 chr3R 24072092 intron 4EHP - chr3R 24072309 intron 4EHP - chr3R 24072526 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-93 1352 chr3R 24076920 24076948 chr3R 24078387 24078412 hobo 10 1466 4.5 3.0 3.8 2.1 1492 chr3R 24076920 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078412 intron 4EHP - chr3R_10_24075001 chr3R_24075001 RAL-93 1353 chr3R 24084177 24084208 chr3R 24084262 24084293 10 81 1.5 0.5 1.0 5.0 116 chr3R 24084177 intron 4EHP - chr3R 24084235 intron 4EHP - chr3R 24084293 intron 4EHP - chr3R_10_24080001 chr3R_24080001 RAL-93 1354 chr3R 24144565 24144597 chr3R 24144708 24144740 6 142 3.5 4.5 4.0 1.2 175 chr3R 24144565 intron Kal1 + chr3R 24144652 intron Kal1 + chr3R 24144740 intron Kal1 + chr3R_6_24140001 chr3R_24140001 RAL-93 1355 chr3R 24207215 24207241 chr3R 24212291 24212317 flea 12 5076 3.5 4.5 4.0 2.4 5102 chr3R 24207215 intron twin - chr3R 24209766 intron twin - chr3R 24212317 intron twin - chr3R_12_24205001 chr3R_24205001 RAL-93 1356 chr3R 24236467 24236498 chr3R 24236542 24236575 9 77 3.5 1.0 2.2 2.8 108 chr3R 24236467 exon mask + chr3R 24236521 intron mask + chr3R 24236575 intron mask + chr3R_9_24235001 chr3R_24235001 RAL-93 1357 chr3R 24291119 24291147 chr3R 24291202 24291237 8 81 2.5 2.0 2.2 2.5 118 chr3R 24291119 exon CG6364 + chr3R 24291178 intron CG6364 + chr3R 24291237 intron CG6364 + chr3R_8_24290001 chr3R_24290001 RAL-93 1358 chr3R 21907534 21907536 chr3R 24389465 24389465 4 2481930 18.5 10.5 14.5 0.3 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-93 1359 chr3R 24399121 24399145 chr3R 24399278 24399302 4 157 0.0 3.0 1.5 1.6 181 chr3R 24399121 3` UTR nAChRalpha1 - chr3R 24399212 3` UTR nAChRalpha1 - chr3R 24399302 3` UTR nAChRalpha1 - chr3R_4_24395001 chr3R_24395001 RAL-93 1360 chr3R 24495287 24495320 chr3R 24495365 24495399 10 78 4.5 3.5 4.0 2.0 112 chr3R 24495287 intergenic not near genes chr3R 24495343 intergenic not near genes chr3R 24495399 intergenic not near genes chr3R_10_24495001 chr3R_24495001 RAL-93 1361 chr3R 24670183 24670199 chr3R 24670267 24670284 4 84 0.0 1.5 0.8 2.2 101 chr3R 24670183 intron slo + chr3R 24670234 intron slo + chr3R 24670284 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-93 1362 chr3R 24671229 24671254 chr3R 24671297 24671304 5 63 1.0 3.0 2.0 1.7 75 chr3R 24671229 intron slo + chr3R 24671266 intron slo + chr3R 24671304 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-93 1363 chr3R 24730095 24730113 chr3R 24732473 24732490 Doc 6 2377 5.0 0.5 2.8 1.6 2395 chr3R 24730095 intron tok + chr3R 24731292 intron tok + chr3R 24732490 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-93 1364 chr3R 24927135 24927155 chr3R 24931925 24931946 Doc 8 4790 4.0 3.0 3.5 1.8 4811 chr3R 24927135 intergenic Trf4-2 + chr3R 24929540 intergenic not near genes chr3R 24931946 intergenic CG11771 + chr3R_8_24925001 chr3R_24925001 RAL-93 1365 chr3R 24974921 24974934 chr3R 24975000 24975013 5 78 3.5 5.5 4.5 0.9 92 chr3R 24974921 intergenic not near genes chr3R 24974967 intergenic not near genes chr3R 24975013 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-93 1366 chr3R 25004903 25004919 chr3R 25004986 25005002 8 83 0.5 3.0 1.8 2.9 99 chr3R 25004903 intron tnc + chr3R 25004952 intron tnc + chr3R 25005002 intron tnc + chr3R_8_25000001 chr3R_25000001 RAL-93 1367 chr3R 25021686 25021694 chr3R 25021987 25021994 4 302 5.5 2.0 3.8 0.8 308 chr3R 25021686 3` UTR tnc + chr3R 25021840 3` UTR tnc + chr3R 25021994 3` UTR tnc + chr3R_4_25020001 chr3R_25020001 RAL-93 1368 chr3R 25021699 25021716 chr3R 25021985 25021997 9 295 3.0 2.0 2.5 2.6 298 chr3R 25021699 3` UTR tnc + chr3R 25021848 3` UTR tnc + chr3R 25021997 3` UTR tnc + chr3R_9_25020001 chr3R_25020001 RAL-93 1369 chr3R 25159785 25159804 chr3R 25159880 25159899 10 94 4.5 3.0 3.8 2.1 114 chr3R 25159785 intergenic not near genes chr3R 25159842 intergenic not near genes chr3R 25159899 intergenic not near genes chr3R_10_25155001 chr3R_25155001 RAL-93 1370 chr3R 25194582 25194598 chr3R 25194660 25194675 5 78 0.5 2.0 1.2 2.3 93 chr3R 25194582 intergenic not near genes chr3R 25194628 intergenic not near genes chr3R 25194675 intergenic not near genes chr3R_5_25190001 chr3R_25190001 RAL-93 1371 chr3R 25208895 25208928 chr3R 25208971 25209007 5 78 3.5 1.0 2.2 1.6 112 chr3R 25208895 intron CG13654 + chr3R 25208951 intron CG13654 + chr3R 25209007 intron CG13654 + chr3R_5_25205001 chr3R_25205001 RAL-93 1372 chr3R 25269231 25269260 chr3R 25269306 25269335 8 76 1.0 4.0 2.5 2.3 104 chr3R 25269231 intron CR45214 - chr3R 25269283 intron CR45214 - chr3R 25269335 intron CR45214 - chr3R_8_25265001 chr3R_25265001 RAL-93 1373 chr3R 25300672 25300699 chr3R 25300788 25300815 7 116 1.5 3.5 2.5 2.0 143 chr3R 25300672 intergenic CG13659 + chr3R 25300744 intergenic CG13659 + chr3R 25300815 intergenic CG13659 + chr3R_7_25300001 chr3R_25300001 RAL-93 1374 chr3R 25334427 25334462 chr3R 25334552 25334568 12 117 2.0 5.0 3.5 2.7 141 chr3R 25334427 intron CG10669 - chr3R 25334498 exon CG10669 - chr3R 25334568 exon CG10669 - chr3R_12_25330001 chr3R_25330001 RAL-93 1375 chr3R 25352594 25352627 chr3R 25352690 25352707 9 93 1.0 5.5 3.2 2.1 113 chr3R 25352594 intron Fur1 - chr3R 25352650 intron Fur1 - chr3R 25352707 intron Fur1 - chr3R_9_25350001 chr3R_25350001 RAL-93 1376 chr3R 25368476 25368496 chr3R 25368594 25368614 4 118 2.5 0.0 1.2 1.8 138 chr3R 25368476 intron Fur1 - chr3R 25368545 intron Fur1 - chr3R 25368614 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-93 1377 chr3R 25371199 25371232 chr3R 25371276 25371303 10 74 2.5 4.0 3.2 2.4 104 chr3R 25371199 intron Fur1 - chr3R 25371251 intron Fur1 - chr3R 25371303 intron Fur1 - chr3R_10_25370001 chr3R_25370001 RAL-93 1378 chr3R 25374838 25374869 chr3R 25374916 25374947 4 77 1.5 0.5 1.0 2.0 109 chr3R 25374838 intron Fur1 - chr3R 25374892 intron Fur1 - chr3R 25374947 intron Fur1 - chr3R_4_25370001 chr3R_25370001 RAL-93 1379 chr3R 25377404 25377419 chr3R 25377491 25377507 5 88 1.5 0.5 1.0 2.5 103 chr3R 25377404 intron Fur1 - chr3R 25377456 intron Fur1 - chr3R 25377507 intron Fur1 - chr3R_5_25375001 chr3R_25375001 RAL-93 1380 chr3R 25408562 25408577 chr3R 25408829 25408844 7 266 3.0 1.5 2.2 2.2 282 chr3R 25408562 intron Fur1 - chr3R 25408703 intron Fur1 - chr3R 25408844 intron Fur1 - chr3R_7_25405001 chr3R_25405001 RAL-93 1381 chr3R 25408578 25408584 chr3R 25408828 25408851 4 263 2.0 1.5 1.8 1.4 273 chr3R 25408578 intron Fur1 - chr3R 25408714 intron Fur1 - chr3R 25408851 intron Fur1 - chr3R_4_25405001 chr3R_25405001 RAL-93 1382 chr3R 25526251 25526284 chr3R 25526328 25526361 4 77 1.0 1.0 1.0 2.0 110 chr3R 25526251 intron msi + chr3R 25526306 intron msi + chr3R 25526361 intron msi + chr3R_4_25525001 chr3R_25525001 RAL-93 1383 chr3R 25575907 25575938 chr3R 25576284 25576315 7 375 2.0 2.5 2.2 2.2 408 chr3R 25575907 intron msi + chr3R 25576111 intron msi + chr3R 25576315 intron msi + chr3R_7_25575001 chr3R_25575001 RAL-93 1384 chr3R 25580819 25580823 chr3R 25581653 25581682 4 850 5.0 2.0 3.5 0.9 863 chr3R 25580819 intron msi + chr3R 25581250 intron,3` UTR msi +,CG4582 - chr3R 25581682 intron,exon msi +,CG4582 - chr3R_4_25580001 chr3R_25580001 RAL-93 1385 chr3R 25604798 25604818 chr3R 25604890 25604910 4 92 1.0 4.5 2.8 1.1 112 chr3R 25604798 3` UTR,intron msi +,ymp - chr3R 25604854 3` UTR,intron msi +,ymp - chr3R 25604910 3` UTR,intron msi +,ymp - chr3R_4_25600001 chr3R_25600001 RAL-93 1386 chr3R 25720818 25720835 chr3R 25720902 25720920 5 85 0.0 2.5 1.2 2.3 102 chr3R 25720818 intron LpR2 - chr3R 25720869 intron LpR2 - chr3R 25720920 intron LpR2 - chr3R_5_25720001 chr3R_25720001 RAL-93 1387 chr3R 25725830 25725857 chr3R 25734990 25735017 roo 5 9160 1.5 1.0 1.2 2.3 9187 chr3R 25725830 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735017 intron LpR2 - chr3R_5_25730001 chr3R_25730001 RAL-93 1388 chr3R 25755580 25755588 chr3R 25755664 25755671 4 84 1.0 1.0 1.0 2.0 91 chr3R 25755580 intron LpR1 - chr3R 25755626 intron LpR1 - chr3R 25755671 intron LpR1 - chr3R_4_25755001 chr3R_25755001 RAL-93 1389 chr3R 25765004 25765030 chr3R 25765257 25765283 8 253 2.0 2.5 2.2 2.5 279 chr3R 25765004 intergenic not near genes chr3R 25765144 intergenic not near genes chr3R 25765283 intergenic not near genes chr3R_8_25765001 chr3R_25765001 RAL-93 1390 chr3R 25832696 25832718 chr3R 25841878 25841900 roo 9 9181 5.5 2.5 4.0 1.8 9204 chr3R 25832696 exon alpha4GT2 + chr3R 25837298 intron alpha4GT2 + chr3R 25841900 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-93 1391 chr3R 25869212 25869238 chr3R 25869405 25869432 10 193 2.0 1.0 1.5 4.0 220 chr3R 25869212 intron CG5890 + chr3R 25869322 intron CG5890 + chr3R 25869432 intron CG5890 + chr3R_10_25865001 chr3R_25865001 RAL-93 1392 chr3R 25900879 25900909 chr3R 25903605 25903629 11 2718 29.5 26.5 28.0 0.4 2750 chr3R 25900879 exon CG31091 + chr3R 25902254 intergenic CG31091 +,CG31089 + chr3R 25903629 exon,intron CG31089 +,CR43259 - chr3R_11_25900001 chr3R_25900001 RAL-93 1393 chr3R 25932745 25932754 chr3R 25933137 25933146 4 392 2.5 3.0 2.8 1.1 401 chr3R 25932745 intron CCAP-R - chr3R 25932946 intron CCAP-R - chr3R 25933146 intron CCAP-R - chr3R_4_25930001 chr3R_25930001 RAL-93 1394 chr3R 25983698 25983721 chr3R 25983796 25983819 7 97 8.5 3.5 6.0 1.0 121 chr3R 25983698 exon Nf1 + chr3R 25983758 intron Nf1 + chr3R 25983819 intron Nf1 + chr3R_7_25980001 chr3R_25980001 RAL-93 1395 chr3R 26126550 26126559 chr3R 26126636 26126643 5 86 1.0 1.0 1.0 2.5 93 chr3R 26126550 intron CG31324 + chr3R 26126596 intron CG31324 + chr3R 26126643 intron CG31324 + chr3R_5_26125001 chr3R_26125001 RAL-93 1396 chr3R 26239829 26239857 chr3R 26240140 26240168 7 311 1.0 0.5 0.8 3.9 339 chr3R 26239829 intron CR42745 + chr3R 26239998 intron CR42745 + chr3R 26240168 intron CR42745 + chr3R_7_26235001 chr3R_26235001 RAL-93 1397 chr3R 26294716 26294742 chr3R 26294794 26294819 5 77 3.5 1.0 2.2 1.6 103 chr3R 26294716 intergenic not near genes chr3R 26294768 intergenic not near genes chr3R 26294819 intergenic not near genes chr3R_5_26290001 chr3R_26290001 RAL-93 1398 chr3R 26429245 26429274 chr3R 26429326 26429354 7 80 2.0 0.5 1.2 3.2 109 chr3R 26429245 intergenic CR43434 + chr3R 26429300 intergenic CR43434 + chr3R 26429354 intergenic CR43434 + chr3R_7_26425001 chr3R_26425001 RAL-93 1399 chr3R 26541018 26541024 chr3R 26541094 26541103 4 78 1.5 1.0 1.2 1.8 85 chr3R 26541018 intron scrib + chr3R 26541060 intron scrib + chr3R 26541103 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-93 1400 chr3R 26558325 26558355 chr3R 26565637 26565662 Stalker4 6 7306 1.5 4.0 2.8 1.6 7337 chr3R 26558325 intron scrib + chr3R 26561994 intron scrib + chr3R 26565662 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-93 1401 chr3R 26575007 26575039 chr3R 26575086 26575118 19 79 3.5 3.0 3.2 4.5 111 chr3R 26575007 exon scrib + chr3R 26575062 intron scrib + chr3R 26575118 intron scrib + chr3R_19_26575001 chr3R_26575001 RAL-93 1402 chr3R 21907534 21907536 chr3R 26659337 26659337 7 4751802 18.5 14.0 16.2 0.4 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_7_24280001 chr3R_24280001 RAL-93 1403 chr3R 26770240 26770268 chr3R 26770317 26770345 4 77 3.5 3.5 3.5 0.9 105 chr3R 26770240 intergenic CR45563 + chr3R 26770292 intergenic CR45563 + chr3R 26770345 intergenic not near genes chr3R_4_26770001 chr3R_26770001 RAL-93 1404 chr3R 26810555 26810583 chr3R 26811036 26811067 roo 6 484 3.0 2.5 2.8 1.6 512 chr3R 26810555 intron Tl + chr3R 26810811 intron Tl + chr3R 26811067 intron Tl + chr3R_6_26810001 chr3R_26810001 RAL-93 1405 chr3R 27028725 27028744 chr3R 27028804 27028823 5 79 0.0 1.5 0.8 2.8 98 chr3R 27028725 intron RYa-R + chr3R 27028774 intron RYa-R + chr3R 27028823 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-93 1406 chr3R 27035863 27035883 chr3R 27035951 27035971 8 86 1.5 6.0 3.8 1.7 108 chr3R 27035863 intron RYa-R + chr3R 27035917 intron RYa-R + chr3R 27035971 intron RYa-R + chr3R_8_27035001 chr3R_27035001 RAL-93 1407 chr3R 27140516 27140548 chr3R 27148126 27148158 412 12 7610 4.0 5.0 4.5 2.2 7642 chr3R 27140516 intron CG6051 - chr3R 27144337 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_12_27140001 chr3R_27140001 RAL-93 1408 chr3R 27327433 27327455 chr3R 27327512 27327534 4 78 2.0 4.0 3.0 1.0 101 chr3R 27327433 intergenic not near genes chr3R 27327484 intergenic not near genes chr3R 27327534 intergenic not near genes chr3R_4_27325001 chr3R_27325001 RAL-93 1409 chr3R 27342800 27342826 chr3R 27351381 27351407 Tirant 4 8581 2.5 1.0 1.8 1.4 8607 chr3R 27342800 intron CG42534 + chr3R 27347104 intron CG42534 + chr3R 27351407 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-93 1410 chr3R 27470041 27470075 chr3R 27470703 27470737 11 661 2.5 0.5 1.5 4.4 696 chr3R 27470041 intergenic not near genes chr3R 27470389 intergenic not near genes chr3R 27470737 intergenic not near genes chr3R_11_27470001 chr3R_27470001 RAL-93 1411 chr3R 27492381 27492408 chr3R 27492468 27492495 6 87 2.0 1.0 1.5 2.4 114 chr3R 27492381 intergenic not near genes chr3R 27492438 intergenic not near genes chr3R 27492495 intergenic not near genes chr3R_6_27490001 chr3R_27490001 RAL-93 1412 chr3R 27494319 27494344 chr3R 27494437 27494463 10 118 2.5 0.5 1.5 4.0 144 chr3R 27494319 intergenic not near genes chr3R 27494391 intergenic not near genes chr3R 27494463 intergenic not near genes chr3R_10_27490001 chr3R_27490001 RAL-93 1413 chr3R 27541949 27541957 chr3R 27542029 27542038 4 80 11.0 5.5 8.2 0.4 89 chr3R 27541949 intergenic not near genes chr3R 27541994 intergenic not near genes chr3R 27542038 intergenic Gr98b + chr3R_4_27540001 chr3R_27540001 RAL-93 1414 chr3R 27619699 27619731 chr3R 27619814 27619845 10 112 3.5 2.0 2.8 2.6 146 chr3R 27619699 intron Tusp + chr3R 27619772 intron Tusp + chr3R 27619845 intron Tusp + chr3R_10_27615001 chr3R_27615001 RAL-93 1415 chr3R 27641152 27641177 chr3R 27641234 27641269 6 86 0.0 1.0 0.5 4.0 117 chr3R 27641152 intron tau - chr3R 27641210 intron tau - chr3R 27641269 intron tau - chr3R_6_27640001 chr3R_27640001 RAL-93 1416 chr3R 27706774 27706810 chr3R 27706851 27706887 6 76 2.0 1.0 1.5 2.4 113 chr3R 27706774 intergenic CG12428 -,CG12877 + chr3R 27706830 intergenic CG12428 -,CG12877 + chr3R 27706887 intergenic CG12428 -,CG12877 + chr3R_6_27705001 chr3R_27705001 RAL-93 1417 chr3R 27718579 27718600 chr3R 27718658 27718679 5 79 2.5 1.5 2.0 1.7 100 chr3R 27718579 intergenic not near genes chr3R 27718629 intergenic not near genes chr3R 27718679 intergenic not near genes chr3R_5_27715001 chr3R_27715001 RAL-93 1418 chr3R 27799938 27799959 chr3R 27800020 27800041 8 82 3.0 4.0 3.5 1.8 103 chr3R 27799938 intron CG34353 - chr3R 27799990 intron CG34353 - chr3R 27800041 intron CG34353 - chr3R_8_27795001 chr3R_27795001 RAL-93 1419 chr3R 27856761 27856789 chr3R 27858244 27858272 hopper2 4 1483 3.0 3.0 3.0 1.0 1511 chr3R 27856761 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858272 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-93 1420 chr3R 27862956 27862983 chr3R 27868261 27868288 Transpac 4 5305 1.0 2.0 1.5 1.6 5332 chr3R 27862956 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868288 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-93 1421 chr3R 27875704 27875725 chr3R 27882759 27882779 297 8 7055 5.0 3.0 4.0 1.6 7075 chr3R 27875704 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882779 intron CG34353 - chr3R_8_27875001 chr3R_27875001 RAL-93 1422 chr3R 27911247 27911257 chr3R 27911325 27911334 6 78 2.0 2.5 2.2 1.9 87 chr3R 27911247 intergenic not near genes chr3R 27911290 intergenic not near genes chr3R 27911334 intergenic not near genes chr3R_6_27910001 chr3R_27910001 RAL-93 1423 chr3R 28012955 28012979 chr3R 28013167 28013199 9 218 2.5 2.0 2.2 2.8 244 chr3R 28012955 intergenic not near genes chr3R 28013077 intergenic not near genes chr3R 28013199 intergenic not near genes chr3R_9_28010001 chr3R_28010001 RAL-93 1424 chr3R 28054448 28054456 chr3R 28054524 28054531 4 75 7.0 2.5 4.8 0.7 83 chr3R 28054448 intron CG34362 + chr3R 28054490 intron CG34362 + chr3R 28054531 intron CG34362 + chr3R_4_28050001 chr3R_28050001 RAL-93 1425 chr3R 28054458 28054470 chr3R 28054519 28054546 5 73 4.0 2.0 3.0 1.2 88 chr3R 28054458 intron CG34362 + chr3R 28054502 intron CG34362 + chr3R 28054546 intron CG34362 + chr3R_5_28050001 chr3R_28050001 RAL-93 1426 chr3R 28068499 28068522 chr3R 28073941 28073964 I-element 5 5442 1.5 5.5 3.5 1.1 5465 chr3R 28068499 intron CG34362 + chr3R 28071232 intron CG34362 + chr3R 28073964 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-93 1427 chr3R 28103324 28103360 chr3R 28103417 28103435 10 88 2.5 4.0 3.2 2.4 111 chr3R 28103324 intergenic not near genes chr3R 28103380 intergenic not near genes chr3R 28103435 intergenic not near genes chr3R_10_28100001 chr3R_28100001 RAL-93 1428 chr3R 28173361 28173384 chr3R 28173459 28173482 8 98 3.5 3.5 3.5 1.8 121 chr3R 28173361 intron CG34354 + chr3R 28173422 intron CG34354 + chr3R 28173482 intron CG34354 + chr3R_8_28170001 chr3R_28170001 RAL-93 1429 chr3R 28173677 28173696 chr3R 28181107 28181126 mdg1 7 7430 2.5 2.0 2.2 2.2 7449 chr3R 28173677 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181126 intron CG34354 + chr3R_7_28175001 chr3R_28175001 RAL-93 1430 chr3R 28253343 28253372 chr3R 28255853 28255880 jockey 6 2509 2.0 4.5 3.2 1.4 2537 chr3R 28253343 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255880 intergenic not near genes chr3R_6_28250001 chr3R_28250001 RAL-93 1431 chr3R 28302108 28302130 chr3R 28302547 28302569 jockey 4 439 3.0 1.0 2.0 1.3 461 chr3R 28302108 intergenic not near genes chr3R 28302338 intergenic not near genes chr3R 28302569 intergenic not near genes chr3R_4_28300001 chr3R_28300001 RAL-93 1432 chr3R 28307301 28307325 chr3R 28307500 28307526 8 200 5.0 8.0 6.5 1.1 225 chr3R 28307301 intergenic not near genes chr3R 28307414 intergenic not near genes chr3R 28307526 intergenic not near genes chr3R_8_28305001 chr3R_28305001 RAL-93 1433 chr3R 28331509 28331529 chr3R 28331588 28331608 4 79 0.5 0.0 0.2 3.3 99 chr3R 28331509 intron larp - chr3R 28331558 intron larp - chr3R 28331608 intron larp - chr3R_4_28330001 chr3R_28330001 RAL-93 1434 chr3R 28368978 28369008 chr3R 28369056 28369091 6 82 5.5 0.0 2.8 1.6 113 chr3R 28368978 intergenic not near genes chr3R 28369034 intergenic not near genes chr3R 28369091 intergenic not near genes chr3R_6_28365001 chr3R_28365001 RAL-93 1435 chr3R 28390116 28390146 chr3R 28390194 28390224 10 76 0.5 2.5 1.5 4.0 108 chr3R 28390116 intergenic not near genes chr3R 28390170 intergenic not near genes chr3R 28390224 intergenic not near genes chr3R_10_28390001 chr3R_28390001 RAL-93 1436 chr3R 28393705 28393732 chr3R 28393805 28393829 5 99 1.5 1.0 1.2 2.3 124 chr3R 28393705 intergenic not near genes chr3R 28393767 intergenic not near genes chr3R 28393829 intergenic not near genes chr3R_5_28390001 chr3R_28390001 RAL-93 1437 chr3R 28479149 28479167 chr3R 28479232 28479250 6 82 2.0 2.0 2.0 2.0 101 chr3R 28479149 intergenic not near genes chr3R 28479200 intergenic not near genes chr3R 28479250 intergenic not near genes chr3R_6_28475001 chr3R_28475001 RAL-93 1438 chr3R 28484353 28484374 chr3R 28486270 28486292 33 1918 25.0 48.5 36.8 0.9 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_33_28485001 chr3R_28485001 RAL-93 1439 chr3R 28626196 28626225 chr3R 28626296 28626321 8 99 3.5 3.0 3.2 1.9 125 chr3R 28626196 intron CG10011 - chr3R 28626258 intron CG10011 - chr3R 28626321 intron CG10011 - chr3R_8_28625001 chr3R_28625001 RAL-93 1440 chr3R 28792871 28792895 chr3R 28797966 28797990 jockey 9 5094 3.5 4.5 4.0 1.8 5119 chr3R 28792871 intergenic not near genes chr3R 28795430 intergenic not near genes chr3R 28797990 intergenic not near genes chr3R_9_28795001 chr3R_28795001 RAL-93 1441 chr3R 21907534 21907536 chr3R 28831799 28831802 48 6924266 18.5 18.0 18.2 2.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_48_25365001 chr3R_25365001 RAL-93 1442 chr3R 28939780 28939798 chr3R 28939854 28939886 6 85 4.0 3.0 3.5 1.3 106 chr3R 28939780 intron CG14521 - chr3R 28939833 intron CG14521 - chr3R 28939886 intron CG14521 - chr3R_6_28935001 chr3R_28935001 RAL-93 1443 chr3R 28971176 28971190 chr3R 28971257 28971271 4 81 0.5 0.0 0.2 3.3 95 chr3R 28971176 5` UTR CR45669 + chr3R 28971224 5` UTR CR45669 + chr3R 28971271 5` UTR CR45669 + chr3R_4_28970001 chr3R_28970001 RAL-93 1444 chr3R 29079401 29079406 chr3R 29080773 29080777 NOF 5 1371 0.0 3.0 1.5 2.0 1376 chr3R 29079401 intron CG11873 + chr3R 29080089 intron CG11873 + chr3R 29080777 intron CG11873 + chr3R_5_29080001 chr3R_29080001 RAL-93 1445 chr3R 29237267 29237279 chr3R 29239288 29239300 6 2021 20.5 5.0 12.8 0.4 2033 chr3R 29237267 exon CG11951 - chr3R 29238284 intron CG11951 - chr3R 29239300 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-93 1446 chr3R 29351732 29351750 chr3R 29351817 29351827 9 83 3.5 1.5 2.5 2.6 95 chr3R 29351732 intergenic not near genes chr3R 29351780 intergenic not near genes chr3R 29351827 intergenic not near genes chr3R_9_29350001 chr3R_29350001 RAL-93 1447 chr3R 29362865 29362883 chr3R 29362954 29362972 5 89 0.0 1.5 0.8 2.8 107 chr3R 29362865 intergenic not near genes chr3R 29362918 intergenic not near genes chr3R 29362972 intergenic not near genes chr3R_5_29360001 chr3R_29360001 RAL-93 1448 chr3R 29406629 29406645 chr3R 29407897 29407931 jockey 7 1283 4.0 3.5 3.8 1.5 1302 chr3R 29406629 intron Ptp99A + chr3R 29407280 intron Ptp99A + chr3R 29407931 intron Ptp99A + chr3R_7_29405001 chr3R_29405001 RAL-93 1449 chr3R 29415609 29415640 chr3R 29415773 29415803 16 167 21.5 16.0 18.8 0.8 194 chr3R 29415609 intron Ptp99A + chr3R 29415706 intron Ptp99A + chr3R 29415803 intron Ptp99A + chr3R_16_29415001 chr3R_29415001 RAL-93 1450 chr3R 29472023 29472038 chr3R 29472100 29472131 9 89 2.5 2.0 2.2 2.8 108 chr3R 29472023 intron Ptp99A + chr3R 29472077 intron Ptp99A + chr3R 29472131 intron Ptp99A + chr3R_9_29470001 chr3R_29470001 RAL-93 1451 chr3R 29539433 29539453 chr3R 29539509 29539529 15 75 4.5 0.0 2.2 4.7 96 chr3R 29539433 intergenic not near genes chr3R 29539481 intergenic not near genes chr3R 29539529 intergenic not near genes chr3R_15_29535001 chr3R_29535001 RAL-93 1452 chr3R 29546757 29546776 chr3R 29546831 29546852 7 75 4.5 3.5 4.0 1.4 95 chr3R 29546757 intergenic not near genes chr3R 29546804 intergenic not near genes chr3R 29546852 intergenic not near genes chr3R_7_29545001 chr3R_29545001 RAL-93 1453 chr3R 29552096 29552113 chr3R 29552200 29552206 6 109 5.0 4.0 4.5 1.1 110 chr3R 29552096 intergenic not near genes chr3R 29552151 intergenic not near genes chr3R 29552206 intergenic not near genes chr3R_6_29550001 chr3R_29550001 RAL-93 1454 chr3R 29581554 29581566 chr3R 29581635 29581644 4 80 3.0 1.0 2.0 1.3 90 chr3R 29581554 intergenic not near genes chr3R 29581599 intergenic not near genes chr3R 29581644 intergenic not near genes chr3R_4_29580001 chr3R_29580001 RAL-93 1455 chr3R 29590378 29590403 chr3R 29590471 29590496 13 93 2.5 2.5 2.5 3.7 118 chr3R 29590378 intron CG31041 - chr3R 29590437 intron CG31041 - chr3R 29590496 intron CG31041 - chr3R_13_29590001 chr3R_29590001 RAL-93 1456 chr3R 29606087 29606116 chr3R 29606194 29606222 5 104 1.0 3.0 2.0 1.7 135 chr3R 29606087 intron alph + chr3R 29606154 intron alph + chr3R 29606222 intron alph + chr3R_5_29605001 chr3R_29605001 RAL-93 1457 chr3R 29708573 29708587 chr3R 29708632 29708665 5 69 4.0 5.5 4.8 0.9 92 chr3R 29708573 intergenic not near genes chr3R 29708619 intergenic not near genes chr3R 29708665 intergenic not near genes chr3R_5_29705001 chr3R_29705001 RAL-93 1458 chr3R 29831812 29831831 chr3R 29831896 29831915 6 84 6.0 2.0 4.0 1.2 103 chr3R 29831812 exon Atg16 - chr3R 29831864 intron Atg16 - chr3R 29831915 exon Atg16 - chr3R_6_29830001 chr3R_29830001 RAL-93 1459 chr3R 29843874 29843890 chr3R 29843954 29843955 11 77 4.5 10.5 7.5 1.3 81 chr3R 29843874 intron Cad99C + chr3R 29843914 intron Cad99C + chr3R 29843955 intron Cad99C + chr3R_11_29840001 chr3R_29840001 RAL-93 1460 chr3R 29882024 29882053 chr3R 29891181 29891210 roo 6 9156 3.0 3.0 3.0 1.5 9186 chr3R 29882024 intron CG31038 + chr3R 29886617 intron CG31038 + chr3R 29891210 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-93 1461 chr3R 29950577 29950592 chr3R 29950654 29950654 8 74 5.5 4.0 4.8 1.4 77 chr3R 29950577 intergenic TkR99D - chr3R 29950616 intergenic TkR99D - chr3R 29950654 intergenic TkR99D - chr3R_8_29950001 chr3R_29950001 RAL-93 1462 chr3R 29974831 29974854 chr3R 29975217 29975240 6 383 2.5 2.5 2.5 1.7 409 chr3R 29974831 intergenic not near genes chr3R 29975036 intergenic not near genes chr3R 29975240 intergenic not near genes chr3R_6_29975001 chr3R_29975001 RAL-93 1463 chr3R 30001736 30001757 chr3R 30001810 30001833 9 74 4.0 2.5 3.2 2.1 97 chr3R 30001736 intron Tace + chr3R 30001784 intron Tace + chr3R 30001833 intron Tace + chr3R_9_30000001 chr3R_30000001 RAL-93 1464 chr3R 30032169 30032185 chr3R 30032248 30032252 5 76 1.5 2.5 2.0 1.7 83 chr3R 30032169 intron Axn + chr3R 30032210 intron Axn + chr3R 30032252 intron Axn + chr3R_5_30030001 chr3R_30030001 RAL-93 1465 chr3R 30082996 30083021 chr3R 30083072 30083097 5 75 4.0 0.5 2.2 1.6 101 chr3R 30082996 intron sima + chr3R 30083046 intron sima + chr3R 30083097 intron sima + chr3R_5_30080001 chr3R_30080001 RAL-93 1466 chr3R 30084855 30084883 chr3R 30086319 30086349 hobo 14 1466 2.5 4.5 3.5 3.1 1494 chr3R 30084855 intron sima + chr3R 30085602 intron sima + chr3R 30086349 intron sima + chr3R_14_30085001 chr3R_30085001 RAL-93 1467 chr3R 30124968 30124979 chr3R 30125043 30125050 4 74 2.0 9.5 5.8 0.6 82 chr3R 30124968 intergenic CG45073 - chr3R 30125009 intergenic CG45073 - chr3R 30125050 intergenic CG45073 - chr3R_4_30125001 chr3R_30125001 RAL-93 1468 chr3R 30199341 30199361 chr3R 30199419 30199439 4 76 2.0 4.0 3.0 1.0 98 chr3R 30199341 intron CG9743 - chr3R 30199390 intron CG9743 - chr3R 30199439 intron CG9743 - chr3R_4_30195001 chr3R_30195001 RAL-93 1469 chr3R 30238762 30238794 chr3R 30239926 30239958 1360 7 1164 1.5 1.0 1.2 3.2 1196 chr3R 30238762 intergenic not near genes chr3R 30239360 intergenic not near genes chr3R 30239958 intergenic not near genes chr3R_7_30235001 chr3R_30235001 RAL-93 1470 chr3R 30267980 30267998 chr3R 30268066 30268084 10 86 4.5 5.0 4.8 1.7 104 chr3R 30267980 intergenic not near genes chr3R 30268032 intergenic not near genes chr3R 30268084 intergenic not near genes chr3R_10_30265001 chr3R_30265001 RAL-93 1471 chr3R 30317332 30317349 chr3R 30324924 30324941 roo 5 7590 3.0 3.0 3.0 1.2 7609 chr3R 30317332 intron hdc + chr3R 30321136 intron hdc + chr3R 30324941 intron hdc + chr3R_5_30320001 chr3R_30320001 RAL-93 1472 chr3R 30332034 30332059 chr3R 30332113 30332138 9 78 2.0 1.5 1.8 3.2 104 chr3R 30332034 intron hdc + chr3R 30332086 intron hdc + chr3R 30332138 intron hdc + chr3R_9_30330001 chr3R_30330001 RAL-93 1473 chr3R 30456413 30456419 chr3R 30456493 30456500 4 81 0.5 4.0 2.2 1.2 87 chr3R 30456413 intergenic CG2224 - chr3R 30456456 3` UTR CG2224 - chr3R 30456500 3` UTR CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-93 1474 chr3R 30473689 30473703 chr3R 30473804 30473819 6 115 2.5 4.0 3.2 1.4 130 chr3R 30473689 intron PH4alphaEFB + chr3R 30473754 intron PH4alphaEFB + chr3R 30473819 intron PH4alphaEFB + chr3R_6_30470001 chr3R_30470001 RAL-93 1475 chr3R 30480479 30480513 chr3R 30482941 30482981 jockey 9 2467 0.0 1.5 0.8 5.0 2502 chr3R 30480479 intron PH4alphaEFB + chr3R 30481730 intron PH4alphaEFB + chr3R 30482981 intron PH4alphaEFB + chr3R_9_30480001 chr3R_30480001 RAL-93 1476 chr3R 30483466 30483471 chr3R 30483545 30483547 4 78 3.5 13.0 8.2 0.4 81 chr3R 30483466 intron PH4alphaEFB + chr3R 30483506 intron PH4alphaEFB + chr3R 30483547 intron PH4alphaEFB + chr3R_4_30480001 chr3R_30480001 RAL-93 1477 chr3R 30498408 30498426 chr3R 30498608 30498626 7 200 0.0 1.5 0.8 3.9 218 chr3R 30498408 intron PH4alphaNE1 - chr3R 30498517 intron PH4alphaNE1 - chr3R 30498626 intron PH4alphaNE1 - chr3R_7_30495001 chr3R_30495001 RAL-93 1478 chr3R 30536496 30536515 chr3R 30536577 30536595 11 80 4.0 0.0 2.0 3.7 99 chr3R 30536496 intron tmod + chr3R 30536546 intron tmod + chr3R 30536595 intron tmod + chr3R_11_30535001 chr3R_30535001 RAL-93 1479 chr3R 30663319 30663343 chr3R 30663398 30663421 6 77 1.0 1.0 1.0 3.0 102 chr3R 30663319 intergenic not near genes chr3R 30663370 intergenic not near genes chr3R 30663421 intergenic not near genes chr3R_6_30660001 chr3R_30660001 RAL-93 1480 chr3R 30679517 30679552 chr3R 30686986 30687021 blood 16 7468 2.5 7.0 4.8 2.8 7504 chr3R 30679517 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_16_30680001 chr3R_30680001 RAL-93 1481 chr3R 30733323 30733351 chr3R 30733413 30733429 8 87 3.0 2.5 2.8 2.1 106 chr3R 30733323 intergenic not near genes chr3R 30733376 intergenic not near genes chr3R 30733429 intergenic not near genes chr3R_8_30730001 chr3R_30730001 RAL-93 1482 chr3R 30948074 30948107 chr3R 30948265 30948298 10 191 4.5 2.0 3.2 2.4 224 chr3R 30948074 intergenic not near genes chr3R 30948186 intergenic not near genes chr3R 30948298 intergenic not near genes chr3R_10_30945001 chr3R_30945001 RAL-93 1483 chr3R 31074232 31074255 chr3R 31081830 31081852 springer 6 7598 5.0 1.0 3.0 1.5 7620 chr3R 31074232 intron Sox100B + chr3R 31078042 intron Sox100B + chr3R 31081852 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-93 1484 chr3R 31103211 31103229 chr3R 31103302 31103324 4 97 3.5 4.5 4.0 0.8 113 chr3R 31103211 intergenic not near genes chr3R 31103268 intergenic not near genes chr3R 31103324 intergenic not near genes chr3R_4_31100001 chr3R_31100001 RAL-93 1485 chr3R 31161409 31161435 chr3R 31161922 31161939 8 506 3.0 0.5 1.8 2.9 530 chr3R 31161409 intron,intron Gycbeta100B +,stops - chr3R 31161674 intron,intron Gycbeta100B +,stops - chr3R 31161939 intron,intron Gycbeta100B +,stops - chr3R_8_31160001 chr3R_31160001 RAL-93 1486 chr3R 31279390 31279404 chr3R 31285563 31285584 diver 8 6182 3.5 2.0 2.8 2.1 6194 chr3R 31279390 intergenic not near genes chr3R 31282487 intergenic not near genes chr3R 31285584 intergenic not near genes chr3R_8_31280001 chr3R_31280001 RAL-93 1487 chr3R 31413097 31413123 chr3R 31418295 31418323 copia 14 5199 3.5 0.0 1.8 5.0 5226 chr3R 31413097 intron Gprk2 + chr3R 31415710 intron Gprk2 + chr3R 31418323 intron Gprk2 + chr3R_14_31415001 chr3R_31415001 RAL-93 1488 chr3R 31426883 31426907 chr3R 31426975 31426999 5 92 1.0 1.5 1.2 2.3 116 chr3R 31426883 intron Gprk2 + chr3R 31426941 intron Gprk2 + chr3R 31426999 intron Gprk2 + chr3R_5_31425001 chr3R_31425001 RAL-93 1489 chr3R 31430724 31430743 chr3R 31430807 31430817 7 85 3.5 4.0 3.8 1.5 93 chr3R 31430724 intron Gprk2 + chr3R 31430770 intron Gprk2 + chr3R 31430817 intron Gprk2 + chr3R_7_31430001 chr3R_31430001 RAL-93 1490 chr3R 31435365 31435386 chr3R 31435517 31435538 6 152 2.5 2.5 2.5 1.7 173 chr3R 31435365 intron Gprk2 + chr3R 31435452 intron Gprk2 + chr3R 31435538 intron Gprk2 + chr3R_6_31435001 chr3R_31435001 RAL-93 1491 chr3R 31530816 31530848 chr3R 31531143 31531174 14 321 2.5 2.0 2.2 4.4 358 chr3R 31530816 intergenic not near genes chr3R 31530995 intergenic not near genes chr3R 31531174 intergenic not near genes chr3R_14_31530001 chr3R_31530001 RAL-93 1492 chr3R 31539865 31539885 chr3R 31539948 31539970 7 85 1.5 1.5 1.5 2.8 105 chr3R 31539865 intergenic not near genes chr3R 31539918 intergenic not near genes chr3R 31539970 intergenic not near genes chr3R_7_31535001 chr3R_31535001 RAL-93 1493 chr3R 31599779 31599810 chr3R 31599864 31599894 5 85 0.5 2.0 1.2 2.3 115 chr3R 31599779 intron CycG - chr3R 31599836 intron CycG - chr3R 31599894 intron CycG - chr3R_5_31595001 chr3R_31595001 RAL-93 1494 chr3R 31691546 31691552 chr3R 31696312 31696315 Doc 4 4765 2.0 4.5 3.2 1.0 4769 chr3R 31691546 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696315 intergenic not near genes chr3R_4_31690001 chr3R_31690001 RAL-93 1495 chr3R 31691554 31691558 chr3R 31696299 31696324 Doc 5 4758 2.0 3.5 2.8 1.3 4770 chr3R 31691554 intergenic not near genes chr3R 31693939 intergenic not near genes chr3R 31696324 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-93 1496 chr3R 31774877 31774896 chr3R 31775022 31775041 10 145 1.5 2.0 1.8 3.6 164 chr3R 31774877 3` UTR sip3 + chr3R 31774959 3` UTR sip3 + chr3R 31775041 3` UTR sip3 + chr3R_10_31770001 chr3R_31770001 RAL-93 1497 chr3R 31961361 31961368 chr3R 31961420 31961426 5 66 3.5 0.0 1.8 1.8 65 chr3R 31961361 intron heph - chr3R 31961394 intron heph - chr3R 31961426 intron heph - chr3R_5_31960001 chr3R_31960001 RAL-93 1498 chr3R 31962081 31962091 chr3R 31962387 31962396 5 306 3.0 2.5 2.8 1.3 315 chr3R 31962081 intron heph - chr3R 31962238 intron heph - chr3R 31962396 intron heph - chr3R_5_31960001 chr3R_31960001 RAL-93 1499 chr3R 31975793 31975828 chr3R 31975882 31975895 10 84 1.5 0.5 1.0 5.0 102 chr3R 31975793 intron heph - chr3R 31975844 intron heph - chr3R 31975895 intron heph - chr3R_10_31975001 chr3R_31975001 RAL-93 1500 chr3R 31976545 31976566 chr3R 31976826 31976846 4 280 0.0 2.0 1.0 2.0 301 chr3R 31976545 intron heph - chr3R 31976696 intron heph - chr3R 31976846 intron heph - chr3R_4_31975001 chr3R_31975001 RAL-93 1501 chr3R 31998001 31998025 chr3R 32005469 32005492 blood 5 7468 1.0 4.5 2.8 1.3 7491 chr3R 31998001 intron heph - chr3R 32001746 intron heph - chr3R 32005492 intron heph - chr3R_5_32000001 chr3R_32000001 RAL-93 1502 chr4 671603 671633 chr4 680186 680213 Tirant 11 8582 2.5 3.0 2.8 2.9 8610 chr4 671603 intron CG11360 + chr4 675908 intron CG11360 + chr4 680213 intron CG11360 + chr4_11_675001 chr4_675001 RAL-93 1503 chr4 827060 827071 chr4 827145 827145 4 82 1.0 3.5 2.2 1.2 85 chr4 827060 intron Sox102F - chr4 827102 intron Sox102F - chr4 827145 intron Sox102F - chr4_4_825001 chr4_825001 RAL-93 1504 chr4 852896 852930 chr4 853260 853294 5 364 0.0 5.0 2.5 1.4 398 chr4 852896 intergenic not near genes chr4 853095 intergenic not near genes chr4 853294 intergenic CG11148 - chr4_5_850001 chr4_850001 RAL-93 1505 chrX 295858 295880 chrX 303478 303500 412 6 7620 0.0 3.5 1.8 2.1 7642 chrX 295858 intron CG3777 + chrX 299679 intron CG3777 + chrX 303500 intron CG3777 + chrX_6_295001 chrX_295001 RAL-93 1506 chrX 449889 449921 chrX 449986 450018 12 97 2.0 0.5 1.2 5.5 129 chrX 449889 intron CG32816 - chrX 449954 intron CG32816 - chrX 450018 intron CG32816 - chrX_12_445001 chrX_445001 RAL-93 1507 chrX 520480 520497 chrX 522332 522342 4 1854 3.0 2.0 2.5 1.1 1862 chrX 520480 intron,intron elav -,arg + chrX 521411 intron,intron elav -,arg + chrX 522342 intron,intron elav -,arg + chrX_4_520001 chrX_520001 RAL-93 1508 chrX 551436 551452 chrX 558982 559012 412 4 7556 2.5 3.5 3.0 1.0 7576 chrX 551436 intron Appl + chrX 555224 intron Appl + chrX 559012 intron Appl + chrX_4_555001 chrX_555001 RAL-93 1509 chrX 569350 569373 chrX 569465 569480 8 112 2.0 2.0 2.0 2.7 130 chrX 569350 intron Appl + chrX 569415 intron Appl + chrX 569480 intron Appl + chrX_8_565001 chrX_565001 RAL-93 1510 chrX 611155 611166 chrX 611244 611256 8 90 0.5 4.5 2.5 2.3 101 chrX 611155 intron CG13366 - chrX 611206 intron CG13366 - chrX 611256 intron CG13366 - chrX_8_610001 chrX_610001 RAL-93 1511 chrX 667660 667669 chrX 667731 667753 4 81 2.0 1.5 1.8 1.4 93 chrX 667660 intergenic not near genes chrX 667706 intergenic not near genes chrX 667753 intergenic not near genes chrX_4_665001 chrX_665001 RAL-93 1512 chrX 670269 670293 chrX 670349 670373 7 79 0.5 1.0 0.8 3.9 104 chrX 670269 intergenic not near genes chrX 670321 intergenic not near genes chrX 670373 intergenic not near genes chrX_7_670001 chrX_670001 RAL-93 1513 chrX 680839 680871 chrX 680922 680953 13 82 2.0 1.0 1.5 5.2 114 chrX 680839 intergenic not near genes chrX 680896 intergenic not near genes chrX 680953 intergenic not near genes chrX_13_680001 chrX_680001 RAL-93 1514 chrX 695294 695316 chrX 695371 695386 5 72 4.0 2.0 3.0 1.2 92 chrX 695294 intron sdk + chrX 695340 intron sdk + chrX 695386 intron sdk + chrX_5_695001 chrX_695001 RAL-93 1515 chrX 778134 778147 chrX 778224 778236 6 90 4.5 1.0 2.8 1.6 102 chrX 778134 intron fz3 + chrX 778185 intron fz3 + chrX 778236 intron fz3 + chrX_6_775001 chrX_775001 RAL-93 1516 chrX 780593 780602 chrX 780669 780678 5 76 2.0 0.0 1.0 2.5 85 chrX 780593 intron fz3 + chrX 780636 intron fz3 + chrX 780678 intron fz3 + chrX_5_780001 chrX_780001 RAL-93 1517 chrX 802305 802319 chrX 802371 802396 9 74 2.0 5.5 3.8 1.9 91 chrX 802305 exon CG13359 - chrX 802350 exon CG13359 - chrX 802396 exon CG13359 - chrX_9_800001 chrX_800001 RAL-93 1518 chrX 806789 806805 chrX 806885 806900 7 94 4.5 4.5 4.5 1.3 111 chrX 806789 intron Sec22 + chrX 806844 intron Sec22 + chrX 806900 intron Sec22 + chrX_7_805001 chrX_805001 RAL-93 1519 chrX 827601 827635 chrX 835393 835426 roo 8 7791 4.5 4.5 4.5 1.5 7825 chrX 827601 intron CG43867 - chrX 831514 intron CG43867 - chrX 835426 intron CG43867 - chrX_8_830001 chrX_830001 RAL-93 1520 chrX 906708 906734 chrX 908497 908523 S-element 13 1789 1.5 2.5 2.0 4.3 1815 chrX 906708 intron CG43867 - chrX 907616 intron CG43867 - chrX 908523 intron CG43867 - chrX_13_905001 chrX_905001 RAL-93 1521 chrX 1253730 1253761 chrX 1253812 1253843 15 81 4.5 2.5 3.5 3.3 113 chrX 1253730 intron Atf3 - chrX 1253786 intron Atf3 - chrX 1253843 intron Atf3 - chrX_15_1250001 chrX_1250001 RAL-93 1522 chrX 1357779 1357805 chrX 1367949 1367975 Doc 8 10169 2.5 2.0 2.2 2.5 10196 chrX 1357779 intergenic png - chrX 1362877 intergenic not near genes chrX 1367975 intergenic not near genes chrX_8_1360001 chrX_1360001 RAL-93 1523 chrX 1518034 1518074 chrX 1523435 1523472 jockey 7 5401 3.5 3.5 3.5 1.6 5438 chrX 1518034 intergenic inc + chrX 1520753 intergenic not near genes chrX 1523472 intergenic not near genes chrX_7_1520001 chrX_1520001 RAL-93 1524 chrX 1627991 1628001 chrX 1635456 1635467 gtwin 4 7466 4.5 2.0 3.2 1.0 7476 chrX 1627991 intron,intron Mur2B -,br + chrX 1631729 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-93 1525 chrX 1667027 1667050 chrX 1670240 1670263 6 3215 23.0 19.5 21.2 0.3 3236 chrX 1667027 intron,exon Mur2B -,dor + chrX 1668645 5` UTR,exon Mur2B -,CG3740 - chrX 1670263 intron hfw + chrX_6_1665001 chrX_1665001 RAL-93 1526 chrX 2069395 2069401 chrX 2069493 2069500 4 99 1.5 3.0 2.2 1.2 105 chrX 2069395 intron,exon CG4199 -,CG4194 + chrX 2069448 intron,3` UTR CG4199 -,CG4194 + chrX 2069500 intron,3` UTR CG4199 -,CG4194 + chrX_4_2065001 chrX_2065001 RAL-93 1527 chrX 2146654 2146686 chrX 2146746 2146779 8 91 2.0 4.0 3.0 2.0 125 chrX 2146654 intron Pgd + chrX 2146716 intron Pgd + chrX 2146779 intron Pgd + chrX_8_2145001 chrX_2145001 RAL-93 1528 chrX 2254465 2254475 chrX 2254540 2254551 5 76 6.0 1.0 3.5 1.1 86 chrX 2254465 3` UTR CG3078 - chrX 2254508 3` UTR CG3078 - chrX 2254551 3` UTR CG3078 - chrX_5_2250001 chrX_2250001 RAL-93 1529 chrX 2452518 2452530 chrX 2452593 2452606 4 75 1.5 2.0 1.8 1.4 88 chrX 2452518 intron boi - chrX 2452562 intron boi - chrX 2452606 intron boi - chrX_4_2450001 chrX_2450001 RAL-93 1530 chrX 2578810 2578845 chrX 2578900 2578936 11 91 3.5 0.5 2.0 3.7 126 chrX 2578810 intergenic Pdfr +,Vha36-3 - chrX 2578873 intergenic Vha36-3 -,Pdfr + chrX 2578936 intergenic Vha36-3 -,Pdfr + chrX_11_2575001 chrX_2575001 RAL-93 1531 chrX 2664383 2664420 chrX 2665529 2665558 1360 5 1144 1.0 1.5 1.2 2.3 1175 chrX 2664383 intron sgg + chrX 2664970 intron sgg + chrX 2665558 intron sgg + chrX_5_2660001 chrX_2660001 RAL-93 1532 chrX 2844904 2844930 chrX 2852312 2852339 mdg1 6 7409 2.0 2.0 2.0 2.0 7435 chrX 2844904 intron kirre + chrX 2848622 intron kirre + chrX 2852339 intron kirre + chrX_6_2845001 chrX_2845001 RAL-93 1533 chrX 3058025 3058050 chrX 3058266 3058290 pogo 5 240 1.5 1.5 1.5 2.0 265 chrX 3058025 intron kirre + chrX 3058158 intron kirre + chrX 3058290 intron kirre + chrX_5_3055001 chrX_3055001 RAL-93 1534 chrX 3203470 3203490 chrX 3203668 3203689 8 199 2.0 5.0 3.5 1.8 219 chrX 3203470 intron dnc + chrX 3203580 intron dnc + chrX 3203689 intron dnc + chrX_8_3200001 chrX_3200001 RAL-93 1535 chrX 3275534 3275560 chrX 3275620 3275647 14 86 2.0 4.0 3.0 3.5 113 chrX 3275534 intron dnc + chrX 3275590 intron dnc + chrX 3275647 intron dnc + chrX_14_3275001 chrX_3275001 RAL-93 1536 chrX 3415025 3415043 chrX 3421207 3421208 3S18 4 6179 0.5 2.0 1.2 1.8 6183 chrX 3415025 intron,intron CR44999 +,CG12535 - chrX 3418116 intron,intron CR44999 +,CG12535 - chrX 3421208 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-93 1537 chrX 3493089 3493114 chrX 3502248 3502273 roo 4 9159 3.5 0.5 2.0 1.3 9184 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497681 intron,intron CR44999 +,Gas8 - chrX 3502273 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-93 1538 chrX 3597549 3597582 chrX 3619717 3619750 roo 8 22168 3.0 1.5 2.2 2.5 22201 chrX 3597549 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619750 intron AstA-R1 + chrX_8_3605001 chrX_3605001 RAL-93 1539 chrX 3726769 3726787 chrX 3730166 3730182 NOF 6 3396 5.0 2.5 3.8 1.2 3413 chrX 3726769 intron tlk + chrX 3728476 intron tlk + chrX 3730182 intron tlk + chrX_6_3725001 chrX_3725001 RAL-93 1540 chrX 3866107 3866137 chrX 3866185 3866215 15 76 1.0 2.0 1.5 6.0 108 chrX 3866107 intron yin - chrX 3866161 intron yin - chrX 3866215 intron yin - chrX_15_3865001 chrX_3865001 RAL-93 1541 chrX 3881272 3881299 chrX 3881411 3881438 11 138 3.0 3.5 3.2 2.6 166 chrX 3881272 intron VhaAC39-1 + chrX 3881355 intron VhaAC39-1 + chrX 3881438 intron VhaAC39-1 + chrX_11_3880001 chrX_3880001 RAL-93 1542 chrX 3922126 3922157 chrX 3922399 3922431 7 274 1.5 4.0 2.8 1.8 305 chrX 3922126 intron CG42541 - chrX 3922278 intron CG42541 - chrX 3922431 intron CG42541 - chrX_7_3920001 chrX_3920001 RAL-93 1543 chrX 3986872 3986892 chrX 3994504 3994525 412 5 7633 3.0 3.0 3.0 1.2 7653 chrX 3986872 intergenic not near genes chrX 3990698 intergenic not near genes chrX 3994525 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-93 1544 chrX 4048504 4048526 chrX 4048580 4048601 7 76 2.0 1.0 1.5 2.8 97 chrX 4048504 3` UTR CR45482 - chrX 4048552 3` UTR CR45482 - chrX 4048601 3` UTR CR45482 - chrX_7_4045001 chrX_4045001 RAL-93 1545 chrX 4415325 4415338 chrX 4415401 4415414 4 76 0.5 3.5 2.0 1.3 89 chrX 4415325 intron,intron CR32773 -,bi + chrX 4415370 intron,intron CR32773 -,bi + chrX 4415414 intron,intron CR32773 -,bi + chrX_4_4415001 chrX_4415001 RAL-93 1546 chrX 4535455 4535478 chrX 4535532 4535555 5 77 0.0 0.0 0.0 5.0 100 chrX 4535455 intron,3` UTR CR32773 -,CG3556 + chrX 4535505 intron CR32773 - chrX 4535555 intron CR32773 - chrX_5_4535001 chrX_4535001 RAL-93 1547 chrX 4731814 4731829 chrX 4736907 4736922 jockey 6 5090 2.5 1.0 1.8 2.1 5108 chrX 4731814 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736922 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-93 1548 chrX 4786456 4786483 chrX 4786542 4786561 5 84 1.5 1.5 1.5 2.0 105 chrX 4786456 intergenic CG6978 + chrX 4786508 intergenic CG6978 + chrX 4786561 intergenic not near genes chrX_5_4785001 chrX_4785001 RAL-93 1549 chrX 4792381 4792406 chrX 4792814 4792839 jockey 8 433 4.0 5.0 4.5 1.5 458 chrX 4792381 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792839 intergenic not near genes chrX_8_4790001 chrX_4790001 RAL-93 1550 chrX 4827969 4828002 chrX 4835340 4835372 Stalker4 7 7364 1.5 4.0 2.8 1.8 7403 chrX 4827969 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835372 intergenic not near genes chrX_7_4830001 chrX_4830001 RAL-93 1551 chrX 4931354 4931381 chrX 4931448 4931475 4 92 19.5 9.5 14.5 0.3 121 chrX 4931354 intron CG44774 - chrX 4931414 intron CG44774 - chrX 4931475 intron CG44774 - chrX_4_4930001 chrX_4930001 RAL-93 1552 chrX 4990043 4990066 chrX 4997256 4997280 roo 5 7214 0.5 0.0 0.2 4.2 7237 chrX 4990043 intron CR44833 - chrX 4993662 intron CR44833 - chrX 4997280 intron CR44833 - chrX_5_4990001 chrX_4990001 RAL-93 1553 chrX 5002081 5002096 chrX 5002166 5002180 4 85 0.0 2.5 1.2 1.8 99 chrX 5002081 intron CR44833 - chrX 5002130 intron CR44833 - chrX 5002180 intron CR44833 - chrX_4_5000001 chrX_5000001 RAL-93 1554 chrX 5096277 5096304 chrX 5103842 5103869 springer 8 7565 0.5 3.5 2.0 2.7 7592 chrX 5096277 intron,intron CG15465 +,rg + chrX 5100073 intron,intron CG15465 +,rg + chrX 5103869 intron,intron CG15465 +,rg + chrX_8_5100001 chrX_5100001 RAL-93 1555 chrX 5272834 5272851 chrX 5272907 5272928 4 81 1.5 2.0 1.8 1.4 94 chrX 5272834 intergenic not near genes chrX 5272881 intergenic not near genes chrX 5272928 intergenic not near genes chrX_4_5270001 chrX_5270001 RAL-93 1556 chrX 5338710 5338726 chrX 5339963 5339978 jockey 6 1253 3.5 2.5 3.0 1.5 1268 chrX 5338710 intergenic not near genes chrX 5339344 intergenic not near genes chrX 5339978 intergenic SK + chrX_6_5335001 chrX_5335001 RAL-93 1557 chrX 5345394 5345429 chrX 5345505 5345540 4 110 1.0 0.5 0.8 2.2 146 chrX 5345394 intron SK + chrX 5345467 intron SK + chrX 5345540 intron SK + chrX_4_5345001 chrX_5345001 RAL-93 1558 chrX 5473591 5473618 chrX 5473666 5473694 10 75 1.5 0.0 0.8 5.6 103 chrX 5473591 intron SPR + chrX 5473642 intron SPR + chrX 5473694 intron SPR + chrX_10_5470001 chrX_5470001 RAL-93 1559 chrX 5566485 5566514 chrX 5566572 5566577 4 80 1.0 2.0 1.5 1.6 92 chrX 5566485 intergenic not near genes chrX 5566531 intergenic not near genes chrX 5566577 intergenic not near genes chrX_4_5565001 chrX_5565001 RAL-93 1560 chrX 5634567 5634598 chrX 5634648 5634681 10 82 2.0 2.5 2.2 3.1 114 chrX 5634567 intron CG42492 - chrX 5634624 intron CG42492 - chrX 5634681 intron CG42492 - chrX_10_5630001 chrX_5630001 RAL-93 1561 chrX 5792574 5792749 chrX 5792708 5792831 4 103 1.5 1.5 1.5 1.6 257 chrX 5792574 exon CG12239 + chrX 5792702 exon CG12239 + chrX 5792831 exon CG12239 + chrX_4_5790001 chrX_5790001 RAL-93 1562 chrX 5798865 5798892 chrX 5799026 5799054 6 162 0.5 4.5 2.5 1.7 189 chrX 5798865 intergenic not near genes chrX 5798960 intergenic not near genes chrX 5799054 intergenic not near genes chrX_6_5795001 chrX_5795001 RAL-93 1563 chrX 5883810 5883840 chrX 5884051 5884081 pogo 8 241 2.5 3.0 2.8 2.1 271 chrX 5883810 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884081 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-93 1564 chrX 6006317 6006345 chrX 6006395 6006421 6 74 2.5 1.0 1.8 2.1 104 chrX 6006317 intergenic not near genes chrX 6006369 intergenic not near genes chrX 6006421 intergenic not near genes chrX_6_6005001 chrX_6005001 RAL-93 1565 chrX 6037549 6037579 chrX 6037732 6037762 12 183 2.5 2.5 2.5 3.4 213 chrX 6037549 intron rux - chrX 6037656 intron rux - chrX 6037762 5` UTR rux - chrX_12_6035001 chrX_6035001 RAL-93 1566 chrX 6171589 6171610 chrX 6179022 6179042 Quasimodo 4 7433 3.0 4.5 3.8 0.8 7453 chrX 6171589 intron Ca-alpha1T - chrX 6175316 intron Ca-alpha1T - chrX 6179042 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-93 1567 chrX 6197045 6197077 chrX 6197132 6197158 7 85 3.0 3.0 3.0 1.8 113 chrX 6197045 exon CG32751 - chrX 6197102 exon CG32751 - chrX 6197158 exon CG32751 - chrX_7_6195001 chrX_6195001 RAL-93 1568 chrX 6314418 6314448 chrX 6314493 6314524 6 75 2.0 3.5 2.8 1.6 106 chrX 6314418 intron CG15894 + chrX 6314471 intron CG15894 + chrX 6314524 intron CG15894 + chrX_6_6310001 chrX_6310001 RAL-93 1569 chrX 6335217 6335240 chrX 6337727 6337750 Tirant 9 2510 0.5 6.5 3.5 2.0 2533 chrX 6335217 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337750 intergenic CG3842 + chrX_9_6335001 chrX_6335001 RAL-93 1570 chrX 6392875 6392901 chrX 6397638 6397666 Doc 8 4764 3.5 5.0 4.2 1.5 4791 chrX 6392875 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397666 intergenic not near genes chrX_8_6395001 chrX_6395001 RAL-93 1571 chrX 6412975 6412986 chrX 6413055 6413067 6 80 5.0 0.5 2.8 1.6 92 chrX 6412975 intergenic not near genes chrX 6413021 intergenic not near genes chrX 6413067 intergenic not near genes chrX_6_6410001 chrX_6410001 RAL-93 1572 chrX 6539916 6539949 chrX 6540018 6540048 5 101 0.0 0.5 0.2 4.2 132 chrX 6539916 intergenic not near genes chrX 6539982 intergenic not near genes chrX 6540048 intergenic not near genes chrX_5_6535001 chrX_6535001 RAL-93 1573 chrX 6562821 6562845 chrX 6571300 6571326 Tirant 6 8480 2.5 2.0 2.2 1.9 8505 chrX 6562821 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571326 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-93 1574 chrX 6562846 6562849 chrX 6571299 6571328 Tirant 5 8471 2.0 1.5 1.8 1.8 8482 chrX 6562846 intron CG34417 + chrX 6567087 intron CG34417 + chrX 6571328 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-93 1575 chrX 6706783 6706810 chrX 6706874 6706900 8 89 1.0 5.0 3.0 2.0 117 chrX 6706783 intron CG14441 + chrX 6706842 intron CG14441 + chrX 6706900 intron CG14441 + chrX_8_6705001 chrX_6705001 RAL-93 1576 chrX 6734241 6734270 chrX 6734354 6734386 10 110 2.5 2.5 2.5 2.9 145 chrX 6734241 intron,intron CG3168 -,CR43461 + chrX 6734314 intron,intron CG3168 -,CR43461 + chrX 6734386 intron,intron CG3168 -,CR43461 + chrX_10_6730001 chrX_6730001 RAL-93 1577 chrX 6737520 6737550 chrX 6737602 6737632 8 82 1.0 0.5 0.8 4.4 112 chrX 6737520 intron CG3168 - chrX 6737576 intron CG3168 - chrX 6737632 intron CG3168 - chrX_8_6735001 chrX_6735001 RAL-93 1578 chrX 6897591 6897709 chrX 6897669 6897819 6 104 0.5 0.5 0.5 4.0 228 chrX 6897591 intergenic not near genes chrX 6897705 intergenic not near genes chrX 6897819 intergenic not near genes chrX_6_6895001 chrX_6895001 RAL-93 1579 chrX 7023610 7023632 chrX 7030996 7031022 Tabor 8 7389 3.5 2.0 2.8 2.1 7412 chrX 7023610 intron CG12541 - chrX 7027316 intron CG12541 - chrX 7031022 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-93 1580 chrX 7125250 7125270 chrX 7134406 7134429 roo 5 9158 0.0 3.5 1.8 1.8 9179 chrX 7125250 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134429 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-93 1581 chrX 7702906 7702929 chrX 7703345 7703368 jockey 6 439 4.0 1.0 2.5 1.7 462 chrX 7702906 intron CHES-1-like - chrX 7703137 intron CHES-1-like - chrX 7703368 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-93 1582 chrX 7749472 7749499 chrX 7749604 7749611 7 125 0.5 2.0 1.2 3.2 139 chrX 7749472 intergenic not near genes chrX 7749542 intergenic not near genes chrX 7749611 intergenic not near genes chrX_7_7745001 chrX_7745001 RAL-93 1583 chrX 7752938 7752954 chrX 7753015 7753026 7 75 2.5 3.5 3.0 1.8 88 chrX 7752938 intergenic not near genes chrX 7752982 intergenic not near genes chrX 7753026 intergenic not near genes chrX_7_7750001 chrX_7750001 RAL-93 1584 chrX 7784238 7784243 chrX 7784539 7784545 jockey 6 302 0.5 3.5 2.0 2.0 307 chrX 7784238 intergenic not near genes chrX 7784392 intergenic not near genes chrX 7784545 intergenic not near genes chrX_6_7780001 chrX_7780001 RAL-93 1585 chrX 7845724 7845755 chrX 7847215 7847246 hopper2 8 1490 3.5 2.5 3.0 2.0 1522 chrX 7845724 intergenic not near genes chrX 7846485 intergenic not near genes chrX 7847246 intergenic not near genes chrX_8_7845001 chrX_7845001 RAL-93 1586 chrX 8013242 8013259 chrX 8013354 8013367 4 111 1.5 1.5 1.5 1.6 125 chrX 8013242 intron Tbh + chrX 8013304 intron Tbh + chrX 8013367 intron Tbh + chrX_4_8010001 chrX_8010001 RAL-93 1587 chrX 8079917 8079938 chrX 8080027 8080047 12 109 1.0 2.0 1.5 4.8 130 chrX 8079917 exon CG2254 - chrX 8079982 intron CG2254 - chrX 8080047 intron CG2254 - chrX_12_8075001 chrX_8075001 RAL-93 1588 chrX 8085577 8085599 chrX 8085663 8085684 6 86 4.5 2.5 3.5 1.3 107 chrX 8085577 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085684 intron,5` UTR CG2256 -,CR45535 + chrX_6_8085001 chrX_8085001 RAL-93 1589 chrX 8161808 8161839 chrX 8165446 8165477 10 3644 19.0 16.0 17.5 0.5 3669 chrX 8161808 exon CG10761 - chrX 8163642 intergenic CR45536 + chrX 8165477 exon Or7a - chrX_10_8160001 chrX_8160001 RAL-93 1590 chrX 8305188 8305223 chrX 8305269 8305304 10 80 3.5 1.0 2.2 3.1 116 chrX 8305188 intron nAChRalpha3 - chrX 8305246 intron nAChRalpha3 - chrX 8305304 intron nAChRalpha3 - chrX_10_8305001 chrX_8305001 RAL-93 1591 chrX 8877779 8877799 chrX 8877903 8877921 4 122 1.5 0.0 0.8 2.2 142 chrX 8877779 intron Moe - chrX 8877850 intron Moe - chrX 8877921 intron Moe - chrX_4_8875001 chrX_8875001 RAL-93 1592 chrX 8922326 8922356 chrX 8922760 8922789 jockey 8 433 2.0 4.5 3.2 1.9 463 chrX 8922326 intron rdgA + chrX 8922558 intron rdgA + chrX 8922789 intron rdgA + chrX_8_8920001 chrX_8920001 RAL-93 1593 chrX 8927598 8927613 chrX 8929868 8929882 NOF 4 2270 5.0 1.5 3.2 1.0 2284 chrX 8927598 intron rdgA + chrX 8928740 intron rdgA + chrX 8929882 intron rdgA + chrX_4_8925001 chrX_8925001 RAL-93 1594 chrX 8934846 8934861 chrX 8934924 8934939 5 78 1.5 3.0 2.2 1.6 93 chrX 8934846 intron rdgA + chrX 8934892 intron rdgA + chrX 8934939 intron rdgA + chrX_5_8930001 chrX_8930001 RAL-93 1595 chrX 9058950 9058959 chrX 9059025 9059032 4 74 2.0 5.5 3.8 0.8 82 chrX 9058950 intron CG15365 - chrX 9058991 intron CG15365 - chrX 9059032 intron CG15365 - chrX_4_9055001 chrX_9055001 RAL-93 1596 chrX 9062727 9062756 chrX 9062805 9062834 5 78 2.0 2.0 2.0 1.7 107 chrX 9062727 intron CG15365 - chrX 9062780 intron CG15365 - chrX 9062834 intron CG15365 - chrX_5_9060001 chrX_9060001 RAL-93 1597 chrX 9128738 9128762 chrX 9128819 9128849 6 86 1.0 3.0 2.0 2.0 111 chrX 9128738 intron fend - chrX 9128794 intron fend - chrX 9128849 intron fend - chrX_6_9125001 chrX_9125001 RAL-93 1598 chrX 9508134 9508166 chrX 9509652 9509683 jockey 4 1517 0.0 3.0 1.5 1.6 1549 chrX 9508134 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509683 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-93 1599 chrX 9575800 9575812 chrX 9576123 9576134 mdg3 5 322 3.5 3.0 3.2 1.2 334 chrX 9575800 intron,exon CG32699 -,CG42395 - chrX 9575967 intron,intron CG32699 -,CG42395 - chrX 9576134 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-93 1600 chrX 8382094 8382094 chrX 9845361 9845361 4 1463267 9.0 10.0 9.5 0.4 1463267 chrX 8382094 intergenic not near genes chrX 9113728 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_4_9110001 chrX_9110001 RAL-93 1601 chrX 9845361 9845361 chrX 14544906 14544908 4 4699546 7.5 16.0 11.8 0.3 4699547 chrX 9845361 intron CG32698 + chrX 12195134 intron Ten-a + chrX 14544908 intergenic not near genes chrX_4_12195001 chrX_12195001 RAL-93 1602 chrX 9845396 9845413 chrX 9845490 9845515 5 100 3.0 1.5 2.2 1.6 119 chrX 9845396 intron CG32698 + chrX 9845456 intron CG32698 + chrX 9845515 intron CG32698 + chrX_5_9845001 chrX_9845001 RAL-93 1603 chrX 9949164 9949185 chrX 9949308 9949329 7 142 4.0 0.0 2.0 2.3 165 chrX 9949164 intergenic not near genes chrX 9949246 intergenic not near genes chrX 9949329 intergenic not near genes chrX_7_9945001 chrX_9945001 RAL-93 1604 chrX 10285892 10285904 chrX 10286228 10286241 5 336 3.0 1.5 2.2 1.6 349 chrX 10285892 intron alpha-Man-I - chrX 10286066 intron alpha-Man-I - chrX 10286241 intron alpha-Man-I - chrX_5_10285001 chrX_10285001 RAL-93 1605 chrX 10439490 10439523 chrX 10439637 10439671 10 146 2.0 1.0 1.5 4.0 181 chrX 10439490 intron CG32683 - chrX 10439580 intron CG32683 - chrX 10439671 intron CG32683 - chrX_10_10435001 chrX_10435001 RAL-93 1606 chrX 10550335 10550355 chrX 10550413 10550433 6 76 0.5 1.0 0.8 3.3 98 chrX 10550335 intron spri - chrX 10550384 intron spri - chrX 10550433 intron spri - chrX_6_10550001 chrX_10550001 RAL-93 1607 chrX 10550858 10550879 chrX 10552325 10552340 hobo 7 1465 3.0 2.0 2.5 2.0 1482 chrX 10550858 intron spri - chrX 10551599 intron spri - chrX 10552340 intron spri - chrX_7_10550001 chrX_10550001 RAL-93 1608 chrX 10686048 10686078 chrX 10691185 10691215 roo 5 5137 2.0 2.0 2.0 1.7 5167 chrX 10686048 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691215 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-93 1609 chrX 10719127 10719146 chrX 10719211 10719229 6 84 0.0 2.5 1.2 2.7 102 chrX 10719127 intron CG32676 - chrX 10719178 intron CG32676 - chrX 10719229 intron CG32676 - chrX_6_10715001 chrX_10715001 RAL-93 1610 chrX 10772679 10772696 chrX 10772759 10772779 Tirant 5 82 1.0 2.0 1.5 2.0 100 chrX 10772679 intron CG15211 + chrX 10772729 intron CG15211 + chrX 10772779 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-93 1611 chrX 11167775 11167802 chrX 11167870 11167899 7 94 2.5 2.0 2.2 2.2 124 chrX 11167775 intergenic antdh - chrX 11167837 intergenic antdh - chrX 11167899 intergenic antdh - chrX_7_11165001 chrX_11165001 RAL-93 1612 chrX 12176738 12176768 chrX 12176814 12176842 9 74 2.5 3.0 2.8 2.4 104 chrX 12176738 intron,3` UTR Ten-a +,CG1924 - chrX 12176790 intron,3` UTR Ten-a +,CG1924 - chrX 12176842 intron,3` UTR Ten-a +,CG1924 - chrX_9_12175001 chrX_12175001 RAL-93 1613 chrX 12301957 12301986 chrX 12303263 12303292 X-element 9 1305 1.5 5.5 3.5 2.0 1335 chrX 12301957 intron Ten-a + chrX 12302624 intron Ten-a + chrX 12303292 intron Ten-a + chrX_9_12300001 chrX_12300001 RAL-93 1614 chrX 12375493 12375513 chrX 12375591 12375611 4 98 3.5 1.0 2.2 1.2 118 chrX 12375493 intergenic Ir11a - chrX 12375552 intergenic Ir11a - chrX 12375611 exon Ir11a - chrX_4_12375001 chrX_12375001 RAL-93 1615 chrX 12393349 12393374 chrX 12393440 12393461 5 89 0.0 0.5 0.2 4.2 112 chrX 12393349 intergenic not near genes chrX 12393405 intergenic not near genes chrX 12393461 intergenic not near genes chrX_5_12390001 chrX_12390001 RAL-93 1616 chrX 12694908 12694928 chrX 12694986 12695006 4 77 1.0 0.5 0.8 2.2 98 chrX 12694908 intron Smr - chrX 12694957 intron Smr - chrX 12695006 intron Smr - chrX_4_12690001 chrX_12690001 RAL-93 1617 chrX 12785101 12785130 chrX 12785184 12785213 6 83 1.5 2.0 1.8 2.1 112 chrX 12785101 intergenic CG32647 -,Pde9 - chrX 12785157 intergenic CG32647 -,Pde9 - chrX 12785213 intergenic CG32647 -,Pde9 - chrX_6_12785001 chrX_12785001 RAL-93 1618 chrX 13429470 13429480 chrX 13430619 13430628 jockey 5 1148 0.0 2.5 1.2 2.3 1158 chrX 13429470 intergenic not near genes chrX 13430049 intergenic not near genes chrX 13430628 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-93 1619 chrX 13442146 13442170 chrX 13442237 13442261 12 90 2.5 4.0 3.2 2.9 115 chrX 13442146 intergenic not near genes chrX 13442204 intergenic not near genes chrX 13442261 intergenic not near genes chrX_12_13440001 chrX_13440001 RAL-93 1620 chrX 13875957 13875989 chrX 13876041 13876073 7 83 0.0 0.0 0.0 7.0 116 chrX 13875957 intron mamo - chrX 13876015 intron mamo - chrX 13876073 intron mamo - chrX_7_13875001 chrX_13875001 RAL-93 1621 chrX 13937980 13938002 chrX 13941251 13941273 I-element 4 3271 2.5 0.5 1.5 1.6 3293 chrX 13937980 intron mamo - chrX 13939626 intron mamo - chrX 13941273 intron mamo - chrX_4_13935001 chrX_13935001 RAL-93 1622 chrX 14030778 14030784 chrX 14035365 14035371 copia 4 4587 0.0 3.5 1.8 1.4 4593 chrX 14030778 intergenic not near genes chrX 14033074 intergenic not near genes chrX 14035371 intergenic not near genes chrX_4_14030001 chrX_14030001 RAL-93 1623 chrX 14105023 14105052 chrX 14114172 14114179 roo 9 9146 2.5 4.0 3.2 2.1 9156 chrX 14105023 intergenic not near genes chrX 14109601 intergenic not near genes chrX 14114179 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-93 1624 chrX 14131490 14131520 chrX 14131570 14131601 13 77 1.0 3.0 2.0 4.3 111 chrX 14131490 intergenic not near genes chrX 14131546 intergenic not near genes chrX 14131601 intergenic not near genes chrX_13_14130001 chrX_14130001 RAL-93 1625 chrX 14142890 14142906 chrX 14142967 14142983 6 76 2.0 0.5 1.2 2.7 93 chrX 14142890 intergenic not near genes chrX 14142936 intergenic not near genes chrX 14142983 intergenic not near genes chrX_6_14140001 chrX_14140001 RAL-93 1626 chrX 14188070 14188106 chrX 14188153 14188189 8 83 0.5 0.5 0.5 5.3 119 chrX 14188070 intergenic CG12481 + chrX 14188130 intergenic CG12481 + chrX 14188189 intergenic CG12481 + chrX_8_14185001 chrX_14185001 RAL-93 1627 chrX 14411259 14411288 chrX 14411337 14411366 5 77 0.5 1.0 0.8 2.8 107 chrX 14411259 intron dpr8 + chrX 14411312 intron dpr8 + chrX 14411366 intron dpr8 + chrX_5_14410001 chrX_14410001 RAL-93 1628 chrX 14421465 14421481 chrX 14421614 14421639 5 156 3.5 3.0 3.2 1.2 174 chrX 14421465 intron dpr8 + chrX 14421552 intron dpr8 + chrX 14421639 intron dpr8 + chrX_5_14420001 chrX_14420001 RAL-93 1629 chrX 14484968 14484983 chrX 14485057 14485072 5 88 0.0 2.0 1.0 2.5 104 chrX 14484968 intergenic not near genes chrX 14485020 intergenic not near genes chrX 14485072 intergenic not near genes chrX_5_14485001 chrX_14485001 RAL-93 1630 chrX 14563289 14563304 chrX 14563738 14563753 6 448 2.5 1.0 1.8 2.1 464 chrX 14563289 intergenic not near genes chrX 14563521 intergenic not near genes chrX 14563753 intergenic not near genes chrX_6_14560001 chrX_14560001 RAL-93 1631 chrX 14636460 14636493 chrX 14641901 14641934 I-element 6 5438 3.0 1.5 2.2 1.9 5474 chrX 14636460 intron NetA - chrX 14639197 intron NetA - chrX 14641934 intron NetA - chrX_6_14635001 chrX_14635001 RAL-93 1632 chrX 14767945 14767975 chrX 14768025 14768055 5 80 1.5 0.0 0.8 2.8 110 chrX 14767945 intergenic not near genes chrX 14768000 intergenic not near genes chrX 14768055 intergenic not near genes chrX_5_14765001 chrX_14765001 RAL-93 1633 chrX 14812131 14812155 chrX 14812390 14812413 4 260 18.0 11.0 14.5 0.3 282 chrX 14812131 intron rut - chrX 14812272 intron rut - chrX 14812413 intron rut - chrX_4_14810001 chrX_14810001 RAL-93 1634 chrX 14818764 14818792 chrX 14823967 14823988 copia 4 5192 2.0 0.5 1.2 1.8 5224 chrX 14818764 intron rut - chrX 14821376 intron rut - chrX 14823988 intron rut - chrX_4_14820001 chrX_14820001 RAL-93 1635 chrX 15228502 15228508 chrX 15228748 15228754 4 246 8.0 0.5 4.2 0.8 252 chrX 15228502 intergenic CG9101 - chrX 15228628 intergenic CG9101 - chrX 15228754 3` UTR CG9101 - chrX_4_15225001 chrX_15225001 RAL-93 1636 chrX 15248274 15248291 chrX 15248342 15248366 4 73 2.0 1.0 1.5 1.6 92 chrX 15248274 intergenic not near genes chrX 15248320 intergenic not near genes chrX 15248366 intergenic not near genes chrX_4_15245001 chrX_15245001 RAL-93 1637 chrX 15256499 15256530 chrX 15256687 15256718 7 187 2.0 3.0 2.5 2.0 219 chrX 15256499 intergenic not near genes chrX 15256608 intergenic not near genes chrX 15256718 intergenic not near genes chrX_7_15255001 chrX_15255001 RAL-93 1638 chrX 15369847 15369865 chrX 15369929 15369948 7 82 1.0 5.5 3.2 1.7 101 chrX 15369847 intron acj6 - chrX 15369898 intron acj6 - chrX 15369948 intron acj6 - chrX_7_15365001 chrX_15365001 RAL-93 1639 chrX 15413048 15413072 chrX 15417350 15417374 Juan 13 4300 4.0 2.5 3.2 3.1 4326 chrX 15413048 intron Cngl - chrX 15415211 intron Cngl - chrX 15417374 intron Cngl - chrX_13_15415001 chrX_15415001 RAL-93 1640 chrX 15435688 15435695 chrX 15436120 15436128 rover 5 433 0.0 4.5 2.2 1.6 440 chrX 15435688 intron Cngl - chrX 15435908 intron Cngl - chrX 15436128 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-93 1641 chrX 15818774 15818793 chrX 15818850 15818868 4 76 4.5 4.0 4.2 0.8 94 chrX 15818774 intron sd + chrX 15818821 intron sd + chrX 15818868 intron sd + chrX_4_15815001 chrX_15815001 RAL-93 1642 chrX 16356524 16356552 chrX 16356640 16356670 7 116 1.0 2.5 1.8 2.5 146 chrX 16356524 intergenic sl +,U2af50 - chrX 16356597 intergenic U2af50 -,sl + chrX 16356670 intergenic U2af50 -,sl + chrX_7_16355001 chrX_16355001 RAL-93 1643 chrX 16365063 16365076 chrX 16365143 16365158 6 82 2.5 3.0 2.8 1.6 95 chrX 16365063 intron nonA + chrX 16365110 intron nonA + chrX 16365158 intron nonA + chrX_6_16365001 chrX_16365001 RAL-93 1644 chrX 16492654 16492669 chrX 16498231 16498246 mdg3 5 5577 4.0 1.0 2.5 1.4 5592 chrX 16492654 intron para - chrX 16495450 intron para - chrX 16498246 intron para - chrX_5_16495001 chrX_16495001 RAL-93 1645 chrX 17010973 17010999 chrX 17011060 17011086 10 86 4.5 1.5 3.0 2.5 113 chrX 17010973 intron CG45002 - chrX 17011030 intron CG45002 - chrX 17011086 intron CG45002 - chrX_10_17010001 chrX_17010001 RAL-93 1646 chrX 17011967 17012000 chrX 17012048 17012082 9 78 1.5 5.5 3.5 2.0 115 chrX 17011967 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012082 intron CG45002 - chrX_9_17010001 chrX_17010001 RAL-93 1647 chrX 17089598 17089624 chrX 17089724 17089732 4 122 2.5 1.0 1.8 1.4 134 chrX 17089598 intergenic not near genes chrX 17089665 intergenic not near genes chrX 17089732 intergenic not near genes chrX_4_17085001 chrX_17085001 RAL-93 1648 chrX 17273816 17273832 chrX 17273949 17273965 4 133 1.5 5.5 3.5 0.9 149 chrX 17273816 exon f + chrX 17273890 intron f + chrX 17273965 intron f + chrX_4_17270001 chrX_17270001 RAL-93 1649 chrX 17352591 17352620 chrX 17352691 17352723 10 102 0.0 1.0 0.5 6.7 132 chrX 17352591 intergenic not near genes chrX 17352657 intergenic not near genes chrX 17352723 intergenic not near genes chrX_10_17350001 chrX_17350001 RAL-93 1650 chrX 17435753 17435786 chrX 17435829 17435862 7 76 0.5 2.0 1.2 3.2 109 chrX 17435753 intron CG12994 - chrX 17435808 intron CG12994 - chrX 17435862 intron CG12994 - chrX_7_17435001 chrX_17435001 RAL-93 1651 chrX 17545004 17545034 chrX 17545086 17545116 5 82 1.0 1.5 1.2 2.3 112 chrX 17545004 intron CG43658 - chrX 17545060 intron CG43658 - chrX 17545116 intron CG43658 - chrX_5_17545001 chrX_17545001 RAL-93 1652 chrX 17555749 17555775 chrX 17555844 17555871 7 94 3.0 1.0 2.0 2.3 122 chrX 17555749 intron CG43658 - chrX 17555810 intron CG43658 - chrX 17555871 intron CG43658 - chrX_7_17555001 chrX_17555001 RAL-93 1653 chrX 17613718 17613725 chrX 17613843 17613849 4 125 5.0 1.0 3.0 1.0 131 chrX 17613718 intergenic not near genes chrX 17613784 intergenic not near genes chrX 17613849 intergenic not near genes chrX_4_17610001 chrX_17610001 RAL-93 1654 chrX 17733464 17733492 chrX 17733562 17733590 10 97 3.0 3.0 3.0 2.5 126 chrX 17733464 intron CG42684 + chrX 17733527 intron CG42684 + chrX 17733590 intron CG42684 + chrX_10_17730001 chrX_17730001 RAL-93 1655 chrX 17792962 17792984 chrX 17796258 17796280 flea 7 3296 0.5 3.5 2.0 2.3 3318 chrX 17792962 intron OdsH + chrX 17794621 intron OdsH + chrX 17796280 intron OdsH + chrX_7_17790001 chrX_17790001 RAL-93 1656 chrX 18122823 18122850 chrX 18122896 18122918 6 74 1.5 2.0 1.8 2.1 95 chrX 18122823 5` UTR CR45606 + chrX 18122870 5` UTR CR45606 + chrX 18122918 5` UTR CR45606 + chrX_6_18120001 chrX_18120001 RAL-93 1657 chrX 18574798 18574825 chrX 18574878 18574905 8 80 0.0 1.0 0.5 5.3 107 chrX 18574798 intergenic not near genes chrX 18574852 intergenic not near genes chrX 18574905 intergenic not near genes chrX_8_18570001 chrX_18570001 RAL-93 1658 chrX 18645025 18645028 chrX 18645123 18645126 4 98 3.5 3.5 3.5 0.9 101 chrX 18645025 intron Rip11 - chrX 18645076 intron Rip11 - chrX 18645126 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-93 1659 chrX 18749888 18749900 chrX 18749972 18749984 6 84 1.5 2.5 2.0 2.0 96 chrX 18749888 intergenic not near genes chrX 18749936 intergenic not near genes chrX 18749984 intergenic not near genes chrX_6_18745001 chrX_18745001 RAL-93 1660 chrX 18861997 18862026 chrX 18862131 18862160 8 134 1.0 3.0 2.0 2.7 163 chrX 18861997 3` UTR CG7326 - chrX 18862078 3` UTR CG7326 - chrX 18862160 3` UTR CG7326 - chrX_8_18860001 chrX_18860001 RAL-93 1661 chrX 19060410 19060436 chrX 19065194 19065219 Doc 6 4784 2.5 2.0 2.2 1.9 4809 chrX 19060410 intron CG14190 + chrX 19062814 intron CG14190 + chrX 19065219 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-93 1662 chrX 19109115 19109136 chrX 19109299 19109320 6 180 0.0 2.0 1.0 3.0 205 chrX 19109115 intergenic not near genes chrX 19109218 intergenic not near genes chrX 19109320 intergenic not near genes chrX_6_19105001 chrX_19105001 RAL-93 1663 chrX 19125701 19125711 chrX 19125830 19125835 4 127 2.0 3.0 2.5 1.1 134 chrX 19125701 intron tgy - chrX 19125768 intron tgy - chrX 19125835 intron tgy - chrX_4_19125001 chrX_19125001 RAL-93 1664 chrX 19199997 19200028 chrX 19200079 19200087 4 75 3.0 0.0 1.5 1.6 90 chrX 19199997 intron CG7990 - chrX 19200042 intron CG7990 - chrX 19200087 intron CG7990 - chrX_4_19200001 chrX_19200001 RAL-93 1665 chrX 13057298 13057300 chrX 19242812 19242814 5 6185514 3.5 5.0 4.2 1.0 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_5_16150001 chrX_16150001 RAL-93 1666 chrX 19281005 19281029 chrX 19281134 19281158 4 129 0.0 0.5 0.2 3.3 153 chrX 19281005 intergenic CG8034 - chrX 19281082 intergenic CG8034 - chrX 19281158 intergenic CG8034 - chrX_4_19280001 chrX_19280001 RAL-93 1667 chrX 19380166 19380185 chrX 19380407 19380424 pogo 4 240 2.5 3.5 3.0 1.0 258 chrX 19380166 intron kek5 + chrX 19380295 intron kek5 + chrX 19380424 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-93 1668 chrX 19472119 19472155 chrX 19472689 19472723 jockey 11 567 3.5 1.5 2.5 3.1 604 chrX 19472119 intergenic kek5 + chrX 19472421 intergenic not near genes chrX 19472723 intergenic not near genes chrX_11_19470001 chrX_19470001 RAL-93 1669 chrX 19593947 19593971 chrX 19594032 19594056 10 85 2.5 3.5 3.0 2.5 109 chrX 19593947 exon CG14205 + chrX 19594002 intron CG14205 + chrX 19594056 intron CG14205 + chrX_10_19590001 chrX_19590001 RAL-93 1670 chrX 19662033 19662057 chrX 19662254 19662277 6 221 0.5 3.0 1.8 2.1 244 chrX 19662033 intron CG14223 - chrX 19662155 intron CG14223 - chrX 19662277 intron CG14223 - chrX_6_19660001 chrX_19660001 RAL-93 1671 chrX 19710076 19710099 chrX 19711857 19711885 S-element 6 1784 1.0 3.5 2.2 1.9 1809 chrX 19710076 intron meso18E - chrX 19710980 intron meso18E - chrX 19711885 intron meso18E - chrX_6_19710001 chrX_19710001 RAL-93 1672 chrX 19769514 19769532 chrX 19769589 19769609 4 76 2.0 4.0 3.0 1.0 95 chrX 19769514 intron vfl - chrX 19769562 intron vfl - chrX 19769609 intron vfl - chrX_4_19765001 chrX_19765001 RAL-93 1673 chrX 19883769 19883788 chrX 19883854 19883872 4 84 3.5 3.5 3.5 0.9 103 chrX 19883769 intron Hers + chrX 19883820 intron Hers + chrX 19883872 intron Hers + chrX_4_19880001 chrX_19880001 RAL-93 1674 chrX 19897383 19897393 chrX 19897459 19897470 4 77 0.5 1.0 0.8 2.2 87 chrX 19897383 intron Hers + chrX 19897426 intron Hers + chrX 19897470 intron Hers + chrX_4_19895001 chrX_19895001 RAL-93 1675 chrX 20041534 20041567 chrX 20041613 20041647 5 80 0.5 1.0 0.8 2.8 113 chrX 20041534 intron Dop2R - chrX 20041590 intron Dop2R - chrX 20041647 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-93 1676 chrX 20105196 20105220 chrX 20105301 20105332 7 105 22.5 28.5 25.5 0.3 136 chrX 20105196 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105332 intergenic not near genes chrX_7_20105001 chrX_20105001 RAL-93 1677 chrX 20144853 20144874 chrX 20145023 20145044 8 170 1.5 1.5 1.5 3.2 191 chrX 20144853 intergenic not near genes chrX 20144948 intergenic not near genes chrX 20145044 intergenic not near genes chrX_8_20140001 chrX_20140001 RAL-93 1678 chrX 20279757 20279773 chrX 20279838 20279854 4 80 0.0 0.0 0.0 4.0 97 chrX 20279757 intergenic not near genes chrX 20279806 intergenic not near genes chrX 20279854 intergenic not near genes chrX_4_20275001 chrX_20275001 RAL-93 1679 chrX 20377328 20377348 chrX 20378793 20378815 hobo 10 1466 3.5 5.5 4.5 1.8 1487 chrX 20377328 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378815 intergenic not near genes chrX_10_20375001 chrX_20375001 RAL-93 1680 chrX 20531760 20531793 chrX 20531859 20531892 4 98 0.0 0.0 0.0 4.0 132 chrX 20531760 intergenic not near genes chrX 20531826 intergenic not near genes chrX 20531892 intergenic not near genes chrX_4_20530001 chrX_20530001 RAL-93 1681 chrX 20575161 20575187 chrX 20575239 20575264 6 78 2.0 3.0 2.5 1.7 103 chrX 20575161 intergenic CG42580 + chrX 20575212 intergenic not near genes chrX 20575264 intergenic not near genes chrX_6_20575001 chrX_20575001 RAL-93 1682 chrX 20733007 20733038 chrX 20733135 20733160 7 126 2.0 0.5 1.2 3.2 153 chrX 20733007 intergenic not near genes chrX 20733084 intergenic not near genes chrX 20733160 intergenic not near genes chrX_7_20730001 chrX_20730001 RAL-93 1683 chrX 20836735 20836747 chrX 20844337 20844343 roo 5 7601 1.0 0.5 0.8 2.8 7608 chrX 20836735 intron shakB - chrX 20840539 intron shakB - chrX 20844343 intron shakB - chrX_5_20840001 chrX_20840001 RAL-93 1684 chrX 20860112 20860133 chrX 20860190 20860210 5 77 3.5 1.5 2.5 1.4 98 chrX 20860112 intron shakB - chrX 20860161 intron shakB - chrX 20860210 intron shakB - chrX_5_20860001 chrX_20860001 RAL-93 1685 chrX 20940725 20940750 chrX 20942194 20942218 hobo 8 1468 3.5 5.5 4.5 1.5 1493 chrX 20940725 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942218 intergenic not near genes chrX_8_20940001 chrX_20940001 RAL-93 1686 chrX 21086137 21086160 chrX 21087166 21087189 jockey 10 1029 2.0 1.0 1.5 4.0 1052 chrX 21086137 intergenic not near genes chrX 21086663 intergenic not near genes chrX 21087189 intergenic not near genes chrX_10_21085001 chrX_21085001 RAL-93 1687 chrX 21268069 21268080 chrX 21268150 21268161 7 80 2.5 2.0 2.2 2.2 92 chrX 21268069 intron CG32521 - chrX 21268115 intron CG32521 - chrX 21268161 intron CG32521 - chrX_7_21265001 chrX_21265001 RAL-93 1688 chrX 21358090 21358092 chrX 21358169 21358171 5 79 1.5 2.5 2.0 1.7 81 chrX 21358090 intergenic sol +,Sep1 + chrX 21358130 intergenic Sep1 +,sol + chrX 21358171 intergenic Sep1 +,sol + chrX_5_21355001 chrX_21355001 RAL-93 1689 chrX 21455213 21455244 chrX 21455392 21455430 4 180 1.5 0.0 0.8 2.2 217 chrX 21455213 intron CG42343 - chrX 21455322 intron CG42343 - chrX 21455430 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-93 1690 chrX 21467013 21467035 chrX 21467097 21467119 11 84 2.0 0.0 1.0 5.5 106 chrX 21467013 intergenic CR45507 - chrX 21467066 intergenic CR45507 - chrX 21467119 intergenic CR45507 - chrX_11_21465001 chrX_21465001 RAL-93 1691 chrX 21474402 21474427 chrX 21474768 21474793 1731 8 365 4.5 4.5 4.5 1.5 391 chrX 21474402 intergenic not near genes chrX 21474598 intergenic not near genes chrX 21474793 intergenic not near genes chrX_8_21470001 chrX_21470001 RAL-93 1692 chrX 21565419 21565444 chrX 21565497 21565522 7 78 1.0 1.0 1.0 3.5 103 chrX 21565419 intergenic not near genes chrX 21565470 intergenic not near genes chrX 21565522 intergenic not near genes chrX_7_21565001 chrX_21565001 RAL-93 1693 chrX 22506979 22507011 chrX 22507064 22507087 6 83 3.0 1.5 2.2 1.9 108 chrX 22506979 intron l(1)G0196 + chrX 22507033 intron l(1)G0196 + chrX 22507087 intron l(1)G0196 + chrX_6_22505001 chrX_22505001 RAL-93 1694 chrX 22564561 22564578 chrX 22575137 22575150 jockey 5 10573 11.0 5.0 8.0 0.6 10589 chrX 22564561 intergenic not near genes chrX 22569856 intergenic not near genes chrX 22575150 intergenic not near genes chrX_5_22565001 chrX_22565001 RAL-93 1695 chrX 22660567 22660591 chrX 22660651 22660674 5 84 2.0 0.0 1.0 2.5 107 chrX 22660567 intron CR44997 + chrX 22660620 intron CR44997 + chrX 22660674 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-93 1696 chrX 22661975 22661990 chrX 22662074 22662088 5 99 0.0 0.0 0.0 5.0 113 chrX 22661975 intron CR44997 + chrX 22662032 intron CR44997 + chrX 22662088 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-93 1697 chrX 22697506 22697527 chrX 22701799 22701801 Juan 9 4294 2.5 1.5 2.0 3.0 4295 chrX 22697506 intron CR44997 + chrX 22699654 intron CR44997 + chrX 22701801 intron CR44997 + chrX_9_22695001 chrX_22695001 RAL-93 1698 chrX 22771510 22771528 chrX 22774801 22774819 297 7 3291 4.5 0.5 2.5 2.0 3309 chrX 22771510 intron CR44997 + chrX 22773164 intron CR44997 + chrX 22774819 intron CR44997 + chrX_7_22770001 chrX_22770001 RAL-93 1699 chrX 22797015 22797020 chrX 22797082 22797105 5 81 0.0 0.5 0.2 4.2 90 chrX 22797015 intron CR44997 + chrX 22797060 intron CR44997 + chrX 22797105 intron CR44997 + chrX_5_22795001 chrX_22795001 RAL-93 1700 chrX 22987101 22987135 chrX 22989760 22989786 Burdock 5 2654 0.5 0.5 0.5 3.3 2685 chrX 22987101 intron,intron stnA -,stnB - chrX 22988444 intron,intron stnA -,stnB - chrX 22989786 intron,intron stnA -,stnB - chrX_5_22985001 chrX_22985001 RAL-93 1701 chrX 22992397 22992428 chrX 22992527 22992559 6 130 1.0 0.5 0.8 3.3 162 chrX 22992397 intron,intron stnA -,stnB - chrX 22992478 intron,intron stnA -,stnB - chrX 22992559 intron,intron stnA -,stnB - chrX_6_22990001 chrX_22990001 RAL-93 1702 chrX 22996329 22996333 chrX 23003561 23003564 roo 4 7232 3.0 2.0 2.5 1.1 7235 chrX 22996329 intron,intron stnA -,stnB - chrX 22999946 intron,intron stnA -,stnB - chrX 23003564 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-93 1703 chrX 23036382 23036414 chrX 23037783 23037815 pogo 4 1401 0.5 0.5 0.5 2.7 1433 chrX 23036382 intron CG12061 + chrX 23037098 intron CG12061 + chrX 23037815 intron CG12061 + chrX_4_23035001 chrX_23035001 RAL-93 1704 chrY 311342 311345 chrY 311459 311462 5 116 2.0 1.5 1.8 1.8 120 chrY 311342 intergenic not near genes chrY 311402 intergenic not near genes chrY 311462 intergenic not near genes chrY_5_310001 chrY_310001 RAL-93 1705 chrY 975592 975819 chrY 975708 975968 5 116 98.5 90.5 94.5 0.1 376 chrY 975592 intergenic not near genes chrY 975780 intergenic not near genes chrY 975968 intergenic not near genes chrY_5_975001 chrY_975001 RAL-93