SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 325132 325158 chr2L 325209 325212 4 70 6.5 2.0 4.2 0.8 80 chr2L 325132 intron Plc21C + chr2L 325172 intron Plc21C + chr2L 325212 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-91 2 chr2L 477817 477851 chr2L 477903 477932 18 81 6.0 5.5 5.8 2.6 115 chr2L 477817 intron,exon ush +,cbt - chr2L 477874 intron,exon ush +,cbt - chr2L 477932 intron,exon ush +,cbt - chr2L_18_475001 chr2L_475001 RAL-91 3 chr2L 504320 504354 chr2L 504396 504421 4 74 1.5 2.0 1.8 1.4 101 chr2L 504320 intron ush + chr2L 504370 intron ush + chr2L 504421 intron ush + chr2L_4_500001 chr2L_500001 RAL-91 4 chr2L 632705 632714 chr2L 632785 632785 5 78 3.5 2.0 2.8 1.3 80 chr2L 632705 intergenic not near genes chr2L 632745 intergenic not near genes chr2L 632785 intergenic not near genes chr2L_5_630001 chr2L_630001 RAL-91 5 chr2L 764555 764575 chr2L 764655 764675 6 100 0.5 3.0 1.8 2.1 120 chr2L 764555 intergenic not near genes chr2L 764615 intergenic not near genes chr2L 764675 intergenic not near genes chr2L_6_760001 chr2L_760001 RAL-91 6 chr2L 770475 770494 chr2L 772245 772272 Bari1 4 1774 2.5 1.0 1.8 1.4 1797 chr2L 770475 intergenic not near genes chr2L 771374 intergenic not near genes chr2L 772272 intergenic CR44614 + chr2L_4_770001 chr2L_770001 RAL-91 7 chr2L 802484 802499 chr2L 802805 802816 5 319 2.5 0.5 1.5 2.0 332 chr2L 802484 intergenic not near genes chr2L 802650 intergenic not near genes chr2L 802816 intergenic not near genes chr2L_5_800001 chr2L_800001 RAL-91 8 chr2L 937048 937065 chr2L 937124 937139 8 76 1.5 1.5 1.5 3.2 91 chr2L 937048 intron CG4341 + chr2L 937094 intron CG4341 + chr2L 937139 intron CG4341 + chr2L_8_935001 chr2L_935001 RAL-91 9 chr2L 976884 976900 chr2L 984520 984536 roo 5 7636 1.5 0.0 0.8 2.8 7652 chr2L 976884 intergenic not near genes chr2L 980710 intergenic not near genes chr2L 984536 intergenic not near genes chr2L_5_980001 chr2L_980001 RAL-91 10 chr2L 1035559 1035590 chr2L 1035636 1035666 9 77 3.0 3.0 3.0 2.2 107 chr2L 1035559 intron IA-2 - chr2L 1035612 intron IA-2 - chr2L 1035666 intron IA-2 - chr2L_9_1035001 chr2L_1035001 RAL-91 11 chr2L 1137653 1137682 chr2L 1137833 1137861 12 179 4.0 2.0 3.0 3.0 208 chr2L 1137653 intron CG4577 + chr2L 1137757 intron CG4577 + chr2L 1137861 intron CG4577 + chr2L_12_1135001 chr2L_1135001 RAL-91 12 chr2L 1162373 1162376 chr2L 1162447 1162459 4 80 2.0 10.5 6.2 0.6 86 chr2L 1162373 intron CG5080 - chr2L 1162416 intron CG5080 - chr2L 1162459 intron CG5080 - chr2L_4_1160001 chr2L_1160001 RAL-91 13 chr2L 1220132 1220159 chr2L 1227596 1227625 blood 6 7465 3.0 0.5 1.8 2.1 7493 chr2L 1220132 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227625 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-91 14 chr2L 1257078 1257088 chr2L 1257184 1257194 4 106 0.5 4.5 2.5 1.1 116 chr2L 1257078 intron robo3 + chr2L 1257136 intron robo3 + chr2L 1257194 intron robo3 + chr2L_4_1255001 chr2L_1255001 RAL-91 15 chr2L 1455816 1455845 chr2L 1455918 1455947 10 101 1.0 2.5 1.8 3.6 131 chr2L 1455816 intergenic not near genes chr2L 1455882 intergenic not near genes chr2L 1455947 intergenic not near genes chr2L_10_1455001 chr2L_1455001 RAL-91 16 chr2L 1570699 1570717 chr2L 1573571 1573589 F-element 4 2872 3.0 1.0 2.0 1.3 2890 chr2L 1570699 intron haf + chr2L 1572144 intron haf + chr2L 1573589 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-91 17 chr2L 1590966 1590990 chr2L 1591042 1591066 6 72 2.0 1.0 1.5 2.4 100 chr2L 1590966 intron haf + chr2L 1591016 intron haf + chr2L 1591066 intron haf + chr2L_6_1590001 chr2L_1590001 RAL-91 18 chr2L 1592230 1592267 chr2L 1592340 1592376 7 108 1.5 1.5 1.5 2.8 146 chr2L 1592230 intron haf + chr2L 1592303 intron haf + chr2L 1592376 intron haf + chr2L_7_1590001 chr2L_1590001 RAL-91 19 chr2L 1687026 1687054 chr2L 1687104 1687129 11 76 5.0 4.5 4.8 1.9 103 chr2L 1687026 intron chinmo + chr2L 1687078 intron chinmo + chr2L 1687129 intron chinmo + chr2L_11_1685001 chr2L_1685001 RAL-91 20 chr2L 1687929 1687950 chr2L 1688209 1688230 6 279 4.5 2.0 3.2 1.4 301 chr2L 1687929 intron chinmo + chr2L 1688080 intron chinmo + chr2L 1688230 intron chinmo + chr2L_6_1685001 chr2L_1685001 RAL-91 21 chr2L 1711362 1711383 chr2L 1711679 1711707 mdg3 21 322 5.0 7.0 6.0 3.0 345 chr2L 1711362 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711534 3` UTR frtz - chr2L 1711707 3` UTR frtz - chr2L_21_1710001 chr2L_1710001 RAL-91 22 chr2L 1721828 1721849 chr2L 1721912 1721933 4 84 1.5 3.5 2.5 1.1 105 chr2L 1721828 intron Rim2 - chr2L 1721880 intron Rim2 - chr2L 1721933 intron Rim2 - chr2L_4_1720001 chr2L_1720001 RAL-91 23 chr2L 1762012 1762044 chr2L 1762096 1762128 4 84 1.0 1.5 1.2 1.8 116 chr2L 1762012 intergenic not near genes chr2L 1762070 intergenic not near genes chr2L 1762128 intergenic not near genes chr2L_4_1760001 chr2L_1760001 RAL-91 24 chr2L 1789821 1789852 chr2L 1790244 1790273 7 422 2.0 1.5 1.8 2.5 452 chr2L 1789821 exon Gr22d - chr2L 1790047 exon Gr22d - chr2L 1790273 exon Gr22d - chr2L_7_1790001 chr2L_1790001 RAL-91 25 chr2L 2021780 2021816 chr2L 2021857 2021873 16 75 2.0 2.5 2.2 5.0 93 chr2L 2021780 intron CG4238 + chr2L 2021826 intron CG4238 + chr2L 2021873 intron CG4238 + chr2L_16_2020001 chr2L_2020001 RAL-91 26 chr2L 2075895 2075927 chr2L 2076038 2076066 6 142 1.5 2.0 1.8 2.1 171 chr2L 2075895 intron dpr3 - chr2L 2075980 intron dpr3 - chr2L 2076066 intron dpr3 - chr2L_6_2075001 chr2L_2075001 RAL-91 27 chr2L 2100379 2100404 chr2L 2109525 2109555 roo 6 9149 2.5 5.0 3.8 1.2 9176 chr2L 2100379 intron dpr3 - chr2L 2104967 intron dpr3 - chr2L 2109555 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-91 28 chr2L 2134194 2134220 chr2L 2134322 2134348 9 128 3.5 2.5 3.0 2.2 154 chr2L 2134194 intron GlyP + chr2L 2134271 intron GlyP + chr2L 2134348 intron GlyP + chr2L_9_2130001 chr2L_2130001 RAL-91 29 chr2L 2236201 2236230 chr2L 2236275 2236296 16 72 4.0 3.0 3.5 3.6 95 chr2L 2236201 intron Sec24CD - chr2L 2236248 intron Sec24CD - chr2L 2236296 intron Sec24CD - chr2L_16_2235001 chr2L_2235001 RAL-91 30 chr2L 2294043 2294070 chr2L 2299248 2299265 copia 5 5201 2.0 2.0 2.0 1.7 5222 chr2L 2294043 intergenic not near genes chr2L 2296654 intergenic not near genes chr2L 2299265 intergenic not near genes chr2L_5_2295001 chr2L_2295001 RAL-91 31 chr2L 2311070 2311091 chr2L 2311166 2311187 8 96 1.5 0.0 0.8 4.4 117 chr2L 2311070 intron CG9967 - chr2L 2311128 intron CG9967 - chr2L 2311187 intron CG9967 - chr2L_8_2310001 chr2L_2310001 RAL-91 32 chr2L 2565554 2565559 chr2L 2571627 2571632 297 6 6073 5.0 2.0 3.5 1.3 6078 chr2L 2565554 exon Cyp309a2 - chr2L 2568593 intron Cyp309a2 - chr2L 2571632 intron Cyp309a2 - chr2L_6_2565001 chr2L_2565001 RAL-91 33 chr2L 2614968 2614991 chr2L 2615578 2615601 4 610 0.0 2.0 1.0 2.0 633 chr2L 2614968 intergenic not near genes chr2L 2615284 intergenic not near genes chr2L 2615601 intergenic not near genes chr2L_4_2615001 chr2L_2615001 RAL-91 34 chr2L 2826547 2826573 chr2L 2826638 2826658 4 86 0.0 4.5 2.2 1.2 111 chr2L 2826547 intron Duox - chr2L 2826602 intron Duox - chr2L 2826658 intron Duox - chr2L_4_2825001 chr2L_2825001 RAL-91 35 chr2L 2894347 2894357 chr2L 2895034 2895044 4 686 5.5 3.0 4.2 0.8 697 chr2L 2894347 intron lilli + chr2L 2894696 intron lilli + chr2L 2895044 intron lilli + chr2L_4_2890001 chr2L_2890001 RAL-91 36 chr2L 2933301 2933326 chr2L 2935478 2935496 pogo 4 2174 5.0 2.0 3.5 0.9 2195 chr2L 2933301 intron lilli + chr2L 2934398 intron lilli + chr2L 2935496 intron lilli + chr2L_4_2930001 chr2L_2930001 RAL-91 37 chr2L 3192210 3192233 chr2L 3192320 3192344 7 107 2.5 2.5 2.5 2.0 134 chr2L 3192210 exon CG34393 - chr2L 3192277 intron CG34393 - chr2L 3192344 intron CG34393 - chr2L_7_3190001 chr2L_3190001 RAL-91 38 chr2L 3384730 3384736 chr2L 3384810 3384816 4 80 0.5 1.5 1.0 2.0 86 chr2L 3384730 intergenic not near genes chr2L 3384773 intergenic not near genes chr2L 3384816 intergenic not near genes chr2L_4_3380001 chr2L_3380001 RAL-91 39 chr2L 3497841 3497866 chr2L 3497919 3497944 6 78 1.5 2.0 1.8 2.1 103 chr2L 3497841 intron tim - chr2L 3497892 intron tim - chr2L 3497944 intron tim - chr2L_6_3495001 chr2L_3495001 RAL-91 40 chr2L 3582881 3582912 chr2L 3582958 3582989 5 77 0.5 4.0 2.2 1.6 108 chr2L 3582881 intergenic not near genes chr2L 3582935 intergenic not near genes chr2L 3582989 intergenic not near genes chr2L_5_3580001 chr2L_3580001 RAL-91 41 chr2L 3601087 3601104 chr2L 3601172 3601183 4 82 3.0 0.0 1.5 1.6 96 chr2L 3601087 intergenic not near genes chr2L 3601135 intergenic not near genes chr2L 3601183 intergenic not near genes chr2L_4_3600001 chr2L_3600001 RAL-91 42 chr2L 3743802 3743835 chr2L 3744075 3744107 8 272 2.0 1.0 1.5 3.2 305 chr2L 3743802 intron CG10019 + chr2L 3743954 intron CG10019 + chr2L 3744107 intron CG10019 + chr2L_8_3740001 chr2L_3740001 RAL-91 43 chr2L 3891894 3891926 chr2L 3891979 3892011 5 85 1.5 1.5 1.5 2.0 117 chr2L 3891894 intron capu - chr2L 3891952 intron capu - chr2L 3892011 intron capu - chr2L_5_3890001 chr2L_3890001 RAL-91 44 chr2L 3908394 3908427 chr2L 3908650 3908686 6 258 0.0 0.5 0.2 5.0 292 chr2L 3908394 intron fred - chr2L 3908540 intron fred - chr2L 3908686 intron fred - chr2L_6_3905001 chr2L_3905001 RAL-91 45 chr2L 3939715 3939741 chr2L 3939798 3939822 9 83 0.0 2.0 1.0 4.5 107 chr2L 3939715 intron fred - chr2L 3939768 intron fred - chr2L 3939822 intron fred - chr2L_9_3935001 chr2L_3935001 RAL-91 46 chr2L 4166381 4166410 chr2L 4166464 4166490 6 82 0.5 1.0 0.8 3.3 109 chr2L 4166381 intergenic Or24a - chr2L 4166436 intergenic Or24a - chr2L 4166490 intergenic Or24a - chr2L_6_4165001 chr2L_4165001 RAL-91 47 chr2L 4285717 4285734 chr2L 4285795 4285814 4 80 3.5 2.5 3.0 1.0 97 chr2L 4285717 intron tutl + chr2L 4285766 intron tutl + chr2L 4285814 intron tutl + chr2L_4_4285001 chr2L_4285001 RAL-91 48 chr2L 4285736 4285738 chr2L 4285788 4285818 4 72 3.5 1.5 2.5 1.1 82 chr2L 4285736 intron tutl + chr2L 4285777 intron tutl + chr2L 4285818 intron tutl + chr2L_4_4285001 chr2L_4285001 RAL-91 49 chr2L 4601702 4601737 chr2L 4609143 4609178 mdg1 7 7440 2.0 1.0 1.5 2.8 7476 chr2L 4601702 intron dp - chr2L 4605440 intron dp - chr2L 4609178 intron dp - chr2L_7_4605001 chr2L_4605001 RAL-91 50 chr2L 4676868 4676876 chr2L 4676947 4676949 4 78 6.5 3.5 5.0 0.7 81 chr2L 4676868 intergenic not near genes chr2L 4676908 intergenic not near genes chr2L 4676949 intergenic not near genes chr2L_4_4675001 chr2L_4675001 RAL-91 51 chr2L 4841073 4841104 chr2L 4841148 4841180 12 72 4.0 6.0 5.0 2.0 107 chr2L 4841073 intron CG12194 + chr2L 4841126 intron CG12194 + chr2L 4841180 exon CG12194 + chr2L_12_4840001 chr2L_4840001 RAL-91 52 chr2L 4918168 4918185 chr2L 4923241 4923258 jockey 6 5072 1.0 2.5 1.8 2.1 5090 chr2L 4918168 intron hoe1 - chr2L 4920713 intron hoe1 - chr2L 4923258 intron hoe1 - chr2L_6_4920001 chr2L_4920001 RAL-91 53 chr2L 4953512 4953544 chr2L 4953753 4953785 pogo 13 241 4.0 1.0 2.5 3.7 273 chr2L 4953512 intergenic Jon25Bii - chr2L 4953648 intergenic not near genes chr2L 4953785 intergenic Jon25Bi - chr2L_13_4950001 chr2L_4950001 RAL-91 54 chr2L 5242931 5242937 chr2L 16217660 16217660 17 10974724 11.0 13.5 12.2 1.3 10974729 chr2L 5242931 intron tkv - chr2L 10730296 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_17_10730001 chr2L_10730001 RAL-91 55 chr2L 5342776 5342789 chr2L 5345143 5345169 Doc 4 2376 2.0 0.0 1.0 2.0 2393 chr2L 5342776 intergenic not near genes chr2L 5343972 intergenic not near genes chr2L 5345169 intergenic not near genes chr2L_4_5340001 chr2L_5340001 RAL-91 56 chr2L 5707191 5707199 chr2L 5707282 5707289 6 91 0.5 4.0 2.2 1.9 98 chr2L 5707191 intron CG7236 + chr2L 5707240 intron CG7236 + chr2L 5707289 intron CG7236 + chr2L_6_5705001 chr2L_5705001 RAL-91 57 chr2L 5804145 5804179 chr2L 5804223 5804257 4 78 1.0 1.5 1.2 1.8 112 chr2L 5804145 intergenic CG7239 + chr2L 5804201 intergenic CG7239 + chr2L 5804257 intergenic CG7239 + chr2L_4_5800001 chr2L_5800001 RAL-91 58 chr2L 5814693 5814703 chr2L 5814775 5814786 4 83 0.5 0.0 0.2 3.3 93 chr2L 5814693 intergenic not near genes chr2L 5814740 intergenic not near genes chr2L 5814786 intergenic not near genes chr2L_4_5810001 chr2L_5810001 RAL-91 59 chr2L 5942026 5942053 chr2L 5942118 5942143 6 90 1.0 1.5 1.2 2.7 117 chr2L 5942026 5` UTR CR45289 + chr2L 5942084 5` UTR CR45289 + chr2L 5942143 5` UTR CR45289 + chr2L_6_5940001 chr2L_5940001 RAL-91 60 chr2L 6050441 6050465 chr2L 6050545 6050568 6 102 2.0 1.0 1.5 2.4 127 chr2L 6050441 intergenic CG12393 +,CG9135 + chr2L 6050504 intergenic CG12393 +,CG9135 + chr2L 6050568 intergenic CG12393 +,CG9135 + chr2L_6_6050001 chr2L_6050001 RAL-91 61 chr2L 6185441 6185470 chr2L 6185518 6185545 5 76 4.0 1.0 2.5 1.4 104 chr2L 6185441 intron CG34380 + chr2L 6185493 intron CG34380 + chr2L 6185545 intron CG34380 + chr2L_5_6185001 chr2L_6185001 RAL-91 62 chr2L 6283942 6283975 chr2L 6284053 6284086 7 111 0.0 1.0 0.5 4.7 144 chr2L 6283942 intron Ddr + chr2L 6284014 intron Ddr + chr2L 6284086 intron Ddr + chr2L_7_6280001 chr2L_6280001 RAL-91 63 chr2L 6363151 6363171 chr2L 6366073 6366087 Burdock 6 2918 4.0 2.5 3.2 1.4 2936 chr2L 6363151 intergenic not near genes chr2L 6364619 intergenic not near genes chr2L 6366087 intergenic not near genes chr2L_6_6360001 chr2L_6360001 RAL-91 64 chr2L 6426859 6426888 chr2L 6445119 6445148 roo 7 18259 1.5 5.0 3.2 1.7 18289 chr2L 6426859 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_7_6435001 chr2L_6435001 RAL-91 65 chr2L 6458578 6458605 chr2L 6458659 6458686 6 78 2.0 1.0 1.5 2.4 108 chr2L 6458578 exon frj + chr2L 6458632 3` UTR frj + chr2L 6458686 3` UTR frj + chr2L_6_6455001 chr2L_6455001 RAL-91 66 chr2L 6463557 6463583 chr2L 6463647 6463648 12 84 7.5 3.5 5.5 1.8 91 chr2L 6463557 exon CG16947 - chr2L 6463602 exon CG16947 - chr2L 6463648 exon CG16947 - chr2L_12_6460001 chr2L_6460001 RAL-91 67 chr2L 6590091 6590125 chr2L 6590167 6590176 4 71 0.5 1.0 0.8 2.2 85 chr2L 6590091 intron CG11319 - chr2L 6590134 intron CG11319 - chr2L 6590176 intron CG11319 - chr2L_4_6590001 chr2L_6590001 RAL-91 68 chr2L 6850378 6850413 chr2L 6850460 6850496 4 82 0.5 2.0 1.2 1.8 118 chr2L 6850378 intergenic not near genes chr2L 6850437 intergenic not near genes chr2L 6850496 intergenic not near genes chr2L_4_6850001 chr2L_6850001 RAL-91 69 chr2L 6876785 6876810 chr2L 6882965 6883001 diver 6 6186 2.5 4.0 3.2 1.4 6216 chr2L 6876785 intron Nlg2 + chr2L 6879893 intron Nlg2 + chr2L 6883001 intron Nlg2 + chr2L_6_6875001 chr2L_6875001 RAL-91 70 chr2L 6969277 6969306 chr2L 6969357 6969386 15 79 2.5 4.0 3.2 3.6 109 chr2L 6969277 3` UTR snRNP-U1-70K - chr2L 6969332 3` UTR snRNP-U1-70K - chr2L 6969386 3` UTR snRNP-U1-70K - chr2L_15_6965001 chr2L_6965001 RAL-91 71 chr2L 7043513 7043517 chr2L 7043598 7043604 4 86 4.0 0.0 2.0 1.3 91 chr2L 7043513 intron milt + chr2L 7043558 intron milt + chr2L 7043604 intron milt + chr2L_4_7040001 chr2L_7040001 RAL-91 72 chr2L 7197996 7198010 chr2L 7198075 7198088 4 78 3.5 1.5 2.5 1.1 92 chr2L 7197996 intron CG4502 - chr2L 7198042 intron CG4502 - chr2L 7198088 intron CG4502 - chr2L_4_7195001 chr2L_7195001 RAL-91 73 chr2L 7244724 7244755 chr2L 7244849 7244878 5 124 0.0 1.0 0.5 3.3 154 chr2L 7244724 intron Ndae1 - chr2L 7244801 intron Ndae1 - chr2L 7244878 intron Ndae1 - chr2L_5_7240001 chr2L_7240001 RAL-91 74 chr2L 7343323 7343353 chr2L 7350439 7350468 roo 8 7116 4.0 3.0 3.5 1.8 7145 chr2L 7343323 intron Wnt6 + chr2L 7346896 intron Wnt6 + chr2L 7350468 intron Wnt6 + chr2L_8_7345001 chr2L_7345001 RAL-91 75 chr2L 7493670 7493700 chr2L 7493880 7493910 4 210 1.5 1.0 1.2 1.8 240 chr2L 7493670 intron Ziz - chr2L 7493790 intron Ziz - chr2L 7493910 intron Ziz - chr2L_4_7490001 chr2L_7490001 RAL-91 76 chr2L 7567938 7567955 chr2L 7568014 7568031 4 76 0.0 2.5 1.2 1.8 93 chr2L 7567938 intron RapGAP1 - chr2L 7567984 intron RapGAP1 - chr2L 7568031 intron RapGAP1 - chr2L_4_7565001 chr2L_7565001 RAL-91 77 chr2L 7769807 7769830 chr2L 7769885 7769909 4 79 0.5 1.0 0.8 2.2 102 chr2L 7769807 intron CG7191 + chr2L 7769858 intron CG7191 + chr2L 7769909 intron CG7191 + chr2L_4_7765001 chr2L_7765001 RAL-91 78 chr2L 7835388 7835404 chr2L 7837952 7837968 6 2565 13.5 13.0 13.2 0.4 2580 chr2L 7835388 intergenic not near genes chr2L 7836678 intergenic not near genes chr2L 7837968 intergenic not near genes chr2L_6_7835001 chr2L_7835001 RAL-91 79 chr2L 7922759 7922774 chr2L 7922840 7922855 8 81 2.0 5.5 3.8 1.7 96 chr2L 7922759 intron Snoo - chr2L 7922807 intron Snoo - chr2L 7922855 intron Snoo - chr2L_8_7920001 chr2L_7920001 RAL-91 80 chr2L 7977090 7977106 chr2L 7984064 7984078 297 6 6974 3.0 4.0 3.5 1.3 6988 chr2L 7977090 intron Snoo - chr2L 7980584 intron Snoo - chr2L 7984078 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 RAL-91 81 chr2L 8044071 8044088 chr2L 8044178 8044195 12 105 6.0 5.0 5.5 1.8 124 chr2L 8044071 exon CG7466 + chr2L 8044133 intron CG7466 + chr2L 8044195 intron CG7466 + chr2L_12_8040001 chr2L_8040001 RAL-91 82 chr2L 8371106 8371136 chr2L 8371263 8371293 11 157 3.5 1.5 2.5 3.1 187 chr2L 8371106 intron CG17292 + chr2L 8371200 intron CG17292 + chr2L 8371293 intron CG17292 + chr2L_11_8370001 chr2L_8370001 RAL-91 83 chr2L 8502671 8502691 chr2L 8502755 8502759 5 80 0.0 0.5 0.2 4.2 88 chr2L 8502671 intron Dh31 - chr2L 8502715 intron Dh31 - chr2L 8502759 intron Dh31 - chr2L_5_8500001 chr2L_8500001 RAL-91 84 chr2L 8604966 8604999 chr2L 8605063 8605087 7 95 2.0 1.0 1.5 2.8 121 chr2L 8604966 intron Sema-1a + chr2L 8605026 intron Sema-1a + chr2L 8605087 intron Sema-1a + chr2L_7_8605001 chr2L_8605001 RAL-91 85 chr2L 8704942 8704971 chr2L 8705119 8705150 5 179 2.5 2.5 2.5 1.4 208 chr2L 8704942 intron,5` UTR Hnf4 -,CR44992 + chr2L 8705046 intron,5` UTR Hnf4 -,CR44992 + chr2L 8705150 intron,5` UTR Hnf4 -,CR44992 + chr2L_5_8705001 chr2L_8705001 RAL-91 86 chr2L 8723114 8723146 chr2L 8731490 8731523 Tirant 7 8377 3.0 0.5 1.8 2.5 8409 chr2L 8723114 intron raw - chr2L 8727318 intron raw - chr2L 8731523 intron raw - chr2L_7_8725001 chr2L_8725001 RAL-91 87 chr2L 8810775 8810802 chr2L 8810864 8810879 6 89 3.5 1.5 2.5 1.7 104 chr2L 8810775 intergenic not near genes chr2L 8810827 intergenic not near genes chr2L 8810879 intergenic not near genes chr2L_6_8810001 chr2L_8810001 RAL-91 88 chr2L 9084337 9084338 chr2L 16217660 16217660 4 7133322 5.5 13.5 9.5 0.4 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-91 89 chr2L 9084339 9084340 chr2L 16217660 16217660 22 7133321 5.5 13.5 9.5 2.1 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_22_12650001 chr2L_12650001 RAL-91 90 chr2L 9264349 9264381 chr2L 9264442 9264481 5 99 1.5 0.0 0.8 2.8 132 chr2L 9264349 intron Ggamma30A + chr2L 9264415 intron Ggamma30A + chr2L 9264481 intron Ggamma30A + chr2L_5_9260001 chr2L_9260001 RAL-91 91 chr2L 9297378 9297398 chr2L 9297454 9297475 6 76 5.5 1.0 3.2 1.4 97 chr2L 9297378 3` UTR Ggamma30A + chr2L 9297426 3` UTR Ggamma30A + chr2L 9297475 3` UTR Ggamma30A + chr2L_6_9295001 chr2L_9295001 RAL-91 92 chr2L 9393504 9393529 chr2L 9396463 9396496 jockey 7 2966 1.5 1.5 1.5 2.8 2992 chr2L 9393504 intron Shawl - chr2L 9395000 intron Shawl - chr2L 9396496 intron Shawl - chr2L_7_9390001 chr2L_9390001 RAL-91 93 chr2L 9490435 9490449 chr2L 9490782 9490794 4 346 4.0 1.0 2.5 1.1 359 chr2L 9490435 intergenic not near genes chr2L 9490614 intergenic not near genes chr2L 9490794 intergenic Gdi - chr2L_4_9490001 chr2L_9490001 RAL-91 94 chr2L 9508541 9508565 chr2L 9508713 9508738 6 171 4.5 2.0 3.2 1.4 197 chr2L 9508541 intron CG33298 + chr2L 9508640 intron CG33298 + chr2L 9508738 intron CG33298 + chr2L_6_9505001 chr2L_9505001 RAL-91 95 chr2L 9829575 9829597 chr2L 9829777 9829797 4 201 3.0 1.5 2.2 1.2 222 chr2L 9829575 intron nAChRalpha6 - chr2L 9829686 intron nAChRalpha6 - chr2L 9829797 intron nAChRalpha6 - chr2L_4_9825001 chr2L_9825001 RAL-91 96 chr2L 9892507 9892531 chr2L 9892583 9892601 7 75 2.0 1.0 1.5 2.8 94 chr2L 9892507 intron mtDNA-helicase - chr2L 9892554 intron mtDNA-helicase - chr2L 9892601 intron mtDNA-helicase - chr2L_7_9890001 chr2L_9890001 RAL-91 97 chr2L 9973740 9973754 chr2L 9980858 9980873 HMS-Beagle 4 7118 7.5 5.0 6.2 0.6 7133 chr2L 9973740 intergenic not near genes chr2L 9977306 intergenic not near genes chr2L 9980873 intergenic not near genes chr2L_4_9975001 chr2L_9975001 RAL-91 98 chr2L 9986350 9986384 chr2L 9986444 9986479 14 92 6.0 4.0 5.0 2.3 129 chr2L 9986350 intron bib + chr2L 9986414 intron bib + chr2L 9986479 intron bib + chr2L_14_9985001 chr2L_9985001 RAL-91 99 chr2L 9989331 9989359 chr2L 9989412 9989440 4 78 2.5 3.0 2.8 1.1 109 chr2L 9989331 intron bib + chr2L 9989386 intron bib + chr2L 9989440 intron bib + chr2L_4_9985001 chr2L_9985001 RAL-91 100 chr2L 10002058 10002073 chr2L 10002149 10002165 4 91 2.0 2.0 2.0 1.3 107 chr2L 10002058 intron,intron CG31875 -,SoYb - chr2L 10002112 intron,intron CG31875 -,SoYb - chr2L 10002165 intron,intron CG31875 -,SoYb - chr2L_4_10000001 chr2L_10000001 RAL-91 101 chr2L 10051742 10051749 chr2L 10051815 10051834 5 81 3.5 3.0 3.2 1.2 92 chr2L 10051742 5` UTR CR44874 + chr2L 10051788 5` UTR CR44874 + chr2L 10051834 5` UTR CR44874 + chr2L_5_10050001 chr2L_10050001 RAL-91 102 chr2L 10081115 10081143 chr2L 10081198 10081226 15 83 3.5 4.0 3.8 3.1 111 chr2L 10081115 intron CG44153 - chr2L 10081170 intron CG44153 - chr2L 10081226 intron CG44153 - chr2L_15_10080001 chr2L_10080001 RAL-91 103 chr2L 10102598 10102613 chr2L 10102679 10102694 6 80 4.5 3.0 3.8 1.2 96 chr2L 10102598 intron,intron CG44153 -,CG34109 + chr2L 10102646 intron,intron CG44153 -,CG34109 + chr2L 10102694 intron,intron CG44153 -,CG34109 + chr2L_6_10100001 chr2L_10100001 RAL-91 104 chr2L 10102621 10102631 chr2L 10102702 10102708 4 80 2.0 6.5 4.2 0.8 87 chr2L 10102621 intron,intron CG44153 -,CG34109 + chr2L 10102664 intron,intron CG44153 -,CG34109 + chr2L 10102708 intron,intron CG44153 -,CG34109 + chr2L_4_10100001 chr2L_10100001 RAL-91 105 chr2L 10153204 10153238 chr2L 10153283 10153317 13 79 1.0 3.5 2.2 4.1 113 chr2L 10153204 intron,exon CG44153 -,CG4839 + chr2L 10153260 intron,intron CG44153 -,CG4839 + chr2L 10153317 intron,intron CG44153 -,CG4839 + chr2L_13_10150001 chr2L_10150001 RAL-91 106 chr2L 10156320 10156351 chr2L 10163790 10163819 blood 6 7469 2.0 0.0 1.0 3.0 7499 chr2L 10156320 intron,3` UTR CG44153 -,CG4839 + chr2L 10160070 intron CG44153 - chr2L 10163819 intron CG44153 - chr2L_6_10160001 chr2L_10160001 RAL-91 107 chr2L 10480315 10480332 chr2L 10480393 10480410 5 78 2.5 0.0 1.2 2.3 95 chr2L 10480315 intron RluA-2 + chr2L 10480362 intron RluA-2 + chr2L 10480410 intron RluA-2 + chr2L_5_10480001 chr2L_10480001 RAL-91 108 chr2L 10580702 10580722 chr2L 10580778 10580798 5 76 1.5 2.0 1.8 1.8 96 chr2L 10580702 intron Trim9 + chr2L 10580750 intron Trim9 + chr2L 10580798 intron Trim9 + chr2L_5_10580001 chr2L_10580001 RAL-91 109 chr2L 10640643 10640670 chr2L 10640732 10640744 11 87 1.0 3.5 2.2 3.4 101 chr2L 10640643 exon CG31872 + chr2L 10640694 exon CG31872 + chr2L 10640744 exon CG31872 + chr2L_11_10640001 chr2L_10640001 RAL-91 110 chr2L 10647601 10647632 chr2L 10647724 10647733 4 118 5.5 3.5 4.5 0.7 132 chr2L 10647601 exon CG17097 + chr2L 10647667 exon CG17097 + chr2L 10647733 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-91 111 chr2L 10661575 10661598 chr2L 10661659 10661682 8 83 3.5 1.0 2.2 2.5 107 chr2L 10661575 intergenic not near genes chr2L 10661628 intergenic CG31871 + chr2L 10661682 intergenic CG31871 + chr2L_8_10660001 chr2L_10660001 RAL-91 112 chr2L 10862840 10862875 chr2L 10864454 10864489 Rt1c 12 1610 3.0 3.0 3.0 3.0 1649 chr2L 10862840 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864489 3` UTR CR43807 - chr2L_12_10860001 chr2L_10860001 RAL-91 113 chr2L 10885425 10885431 chr2L 10885643 10885648 4 218 0.5 0.0 0.2 3.3 223 chr2L 10885425 intergenic not near genes chr2L 10885536 intergenic not near genes chr2L 10885648 intergenic not near genes chr2L_4_10885001 chr2L_10885001 RAL-91 114 chr2L 10912986 10913002 chr2L 10913065 10913081 6 79 2.5 2.5 2.5 1.7 95 chr2L 10912986 intergenic not near genes chr2L 10913034 intergenic not near genes chr2L 10913081 intergenic not near genes chr2L_6_10910001 chr2L_10910001 RAL-91 115 chr2L 10946949 10946975 chr2L 10956164 10956190 roo 6 9215 2.0 1.5 1.8 2.1 9241 chr2L 10946949 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956190 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-91 116 chr2L 11248569 11248584 chr2L 11248652 11248667 4 83 8.0 2.0 5.0 0.7 98 chr2L 11248569 intron ab + chr2L 11248618 intron ab + chr2L 11248667 intron ab + chr2L_4_11245001 chr2L_11245001 RAL-91 117 chr2L 11342199 11342231 chr2L 11342282 11342311 6 81 0.5 1.0 0.8 3.3 112 chr2L 11342199 intergenic CG14926 - chr2L 11342255 intergenic CG14926 - chr2L 11342311 3` UTR CG14926 - chr2L_6_11340001 chr2L_11340001 RAL-91 118 chr2L 11404791 11404802 chr2L 11404867 11404878 4 76 0.5 1.5 1.0 2.0 87 chr2L 11404791 intergenic not near genes chr2L 11404834 intergenic not near genes chr2L 11404878 intergenic not near genes chr2L_4_11400001 chr2L_11400001 RAL-91 119 chr2L 11418655 11418688 chr2L 11418734 11418767 7 79 1.5 1.0 1.2 3.2 112 chr2L 11418655 intergenic not near genes chr2L 11418711 intergenic not near genes chr2L 11418767 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-91 120 chr2L 11491126 11491142 chr2L 11491207 11491223 4 78 1.0 2.0 1.5 1.6 97 chr2L 11491126 intergenic not near genes chr2L 11491174 intergenic not near genes chr2L 11491223 intergenic not near genes chr2L_4_11490001 chr2L_11490001 RAL-91 121 chr2L 11612668 11612684 chr2L 11612755 11612772 5 88 3.0 0.5 1.8 1.8 104 chr2L 11612668 intron kek2 + chr2L 11612720 intron kek2 + chr2L 11612772 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-91 122 chr2L 11614057 11614076 chr2L 11615551 11615571 hopper2 5 1489 1.5 1.5 1.5 2.0 1514 chr2L 11614057 intron kek2 + chr2L 11614814 intron kek2 + chr2L 11615571 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-91 123 chr2L 11769932 11769948 chr2L 11770006 11770024 5 73 4.0 1.5 2.8 1.3 92 chr2L 11769932 intergenic not near genes chr2L 11769978 intergenic not near genes chr2L 11770024 intergenic not near genes chr2L_5_11765001 chr2L_11765001 RAL-91 124 chr2L 12250697 12250712 chr2L 12250774 12250789 4 77 3.5 0.5 2.0 1.3 92 chr2L 12250697 intron aret + chr2L 12250743 intron aret + chr2L 12250789 intron aret + chr2L_4_12250001 chr2L_12250001 RAL-91 125 chr2L 12300500 12300522 chr2L 12301162 12301164 6 656 2.5 3.0 2.8 1.6 664 chr2L 12300500 intron aret + chr2L 12300832 intron aret + chr2L 12301164 intron aret + chr2L_6_12300001 chr2L_12300001 RAL-91 126 chr2L 12345412 12345441 chr2L 12345489 12345498 7 70 4.0 2.5 3.2 1.7 86 chr2L 12345412 intron bru-2 + chr2L 12345455 intron bru-2 + chr2L 12345498 intron bru-2 + chr2L_7_12345001 chr2L_12345001 RAL-91 127 chr2L 12373144 12373172 chr2L 12373233 12373261 5 86 1.0 3.5 2.2 1.6 117 chr2L 12373144 intron bru-2 + chr2L 12373202 intron bru-2 + chr2L 12373261 intron bru-2 + chr2L_5_12370001 chr2L_12370001 RAL-91 128 chr2L 12728935 12728945 chr2L 12729175 12729185 pogo 4 239 0.5 4.5 2.5 1.1 250 chr2L 12728935 intron MRP + chr2L 12729060 intron MRP + chr2L 12729185 exon MRP + chr2L_4_12725001 chr2L_12725001 RAL-91 129 chr2L 12739172 12739199 chr2L 12743953 12743980 Doc 10 4780 4.5 3.0 3.8 2.1 4808 chr2L 12739172 exon MRP + chr2L 12741576 intron MRP + chr2L 12743980 exon MRP + chr2L_10_12740001 chr2L_12740001 RAL-91 130 chr2L 12751311 12751331 chr2L 12751394 12751414 4 82 1.5 2.5 2.0 1.3 103 chr2L 12751311 intergenic not near genes chr2L 12751362 intergenic not near genes chr2L 12751414 intergenic not near genes chr2L_4_12750001 chr2L_12750001 RAL-91 131 chr2L 12763164 12763198 chr2L 12763255 12763288 10 90 2.0 3.0 2.5 2.9 124 chr2L 12763164 intergenic not near genes chr2L 12763226 intergenic not near genes chr2L 12763288 intergenic not near genes chr2L_10_12760001 chr2L_12760001 RAL-91 132 chr2L 12861696 12861726 chr2L 12863163 12863190 hobo 6 1462 0.0 1.0 0.5 4.0 1494 chr2L 12861696 intergenic not near genes chr2L 12862443 intergenic not near genes chr2L 12863190 intergenic not near genes chr2L_6_12860001 chr2L_12860001 RAL-91 133 chr2L 12870273 12870304 chr2L 12870575 12870606 7 301 2.5 2.0 2.2 2.2 333 chr2L 12870273 intergenic not near genes chr2L 12870440 intergenic not near genes chr2L 12870606 intergenic not near genes chr2L_7_12870001 chr2L_12870001 RAL-91 134 chr2L 12933848 12933872 chr2L 12941315 12941339 blood 4 7466 3.5 3.0 3.2 1.0 7491 chr2L 12933848 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941339 intergenic not near genes chr2L_4_12935001 chr2L_12935001 RAL-91 135 chr2L 13136813 13136825 chr2L 13136899 13136918 4 91 1.5 4.0 2.8 1.1 105 chr2L 13136813 intergenic not near genes chr2L 13136866 intergenic not near genes chr2L 13136918 intergenic not near genes chr2L_4_13135001 chr2L_13135001 RAL-91 136 chr2L 13152231 13152255 chr2L 13152309 13152333 11 77 4.5 3.0 3.8 2.3 102 chr2L 13152231 intergenic not near genes chr2L 13152282 intergenic not near genes chr2L 13152333 intergenic not near genes chr2L_11_13150001 chr2L_13150001 RAL-91 137 chr2L 13185323 13185351 chr2L 13185400 13185430 9 78 1.0 2.0 1.5 3.6 107 chr2L 13185323 3` UTR CG16974 - chr2L 13185376 3` UTR CG16974 - chr2L 13185430 exon CG16974 - chr2L_9_13185001 chr2L_13185001 RAL-91 138 chr2L 13207577 13207594 chr2L 13207715 13207732 6 138 0.5 0.0 0.2 5.0 155 chr2L 13207577 intron Pect + chr2L 13207654 intron Pect + chr2L 13207732 intron Pect + chr2L_6_13205001 chr2L_13205001 RAL-91 139 chr2L 13351820 13351850 chr2L 13351906 13351936 8 86 5.0 3.0 4.0 1.6 116 chr2L 13351820 exon CG9395 - chr2L 13351878 intron CG9395 - chr2L 13351936 exon CG9395 - chr2L_8_13350001 chr2L_13350001 RAL-91 140 chr2L 13405648 13405677 chr2L 13410445 13410474 Doc 11 4796 3.0 2.5 2.8 2.9 4826 chr2L 13405648 exon CG7110 + chr2L 13408061 intron CG7110 + chr2L 13410474 intron CG7110 + chr2L_11_13405001 chr2L_13405001 RAL-91 141 chr2L 13481456 13481471 chr2L 13482062 13482078 jockey 8 607 4.0 3.0 3.5 1.8 622 chr2L 13481456 intron CG42784 + chr2L 13481767 intron CG42784 + chr2L 13482078 intron CG42784 + chr2L_8_13480001 chr2L_13480001 RAL-91 142 chr2L 13517842 13517858 chr2L 13517921 13517938 6 78 5.0 1.0 3.0 1.5 96 chr2L 13517842 intron B4 - chr2L 13517890 intron B4 - chr2L 13517938 intron B4 - chr2L_6_13515001 chr2L_13515001 RAL-91 143 chr2L 13567465 13567496 chr2L 13567543 13567573 9 78 0.5 0.0 0.2 7.5 108 chr2L 13567465 intron kuz + chr2L 13567519 intron kuz + chr2L 13567573 intron kuz + chr2L_9_13565001 chr2L_13565001 RAL-91 144 chr2L 13605578 13605607 chr2L 13605660 13605680 8 81 0.5 2.5 1.5 3.2 102 chr2L 13605578 intron kuz + chr2L 13605629 intron kuz + chr2L 13605680 intron kuz + chr2L_8_13605001 chr2L_13605001 RAL-91 145 chr2L 13631766 13631785 chr2L 13631907 13631927 4 142 1.5 4.5 3.0 1.0 161 chr2L 13631766 intron kuz + chr2L 13631846 intron kuz + chr2L 13631927 intron kuz + chr2L_4_13630001 chr2L_13630001 RAL-91 146 chr2L 13701886 13701910 chr2L 13701966 13701990 6 80 0.0 3.0 1.5 2.4 104 chr2L 13701886 intron CG31814 - chr2L 13701938 intron CG31814 - chr2L 13701990 intron CG31814 - chr2L_6_13700001 chr2L_13700001 RAL-91 147 chr2L 13721483 13721505 chr2L 13721571 13721584 7 86 1.5 2.0 1.8 2.5 101 chr2L 13721483 intergenic not near genes chr2L 13721534 intergenic not near genes chr2L 13721584 intergenic not near genes chr2L_7_13720001 chr2L_13720001 RAL-91 148 chr2L 13733774 13733780 chr2L 13733892 13733899 4 118 2.5 2.5 2.5 1.1 125 chr2L 13733774 intergenic not near genes chr2L 13733836 intergenic not near genes chr2L 13733899 intergenic not near genes chr2L_4_13730001 chr2L_13730001 RAL-91 149 chr2L 13966151 13966159 chr2L 13966878 13966886 7 727 5.0 4.5 4.8 1.2 735 chr2L 13966151 intron NimB2 - chr2L 13966518 exon NimB2 - chr2L 13966886 exon NimB2 - chr2L_7_13965001 chr2L_13965001 RAL-91 150 chr2L 14369125 14369163 chr2L 14369241 14369279 6 115 0.5 0.0 0.2 5.0 154 chr2L 14369125 intergenic not near genes chr2L 14369202 intergenic not near genes chr2L 14369279 intergenic not near genes chr2L_6_14365001 chr2L_14365001 RAL-91 151 chr2L 14564219 14564222 chr2L 14564271 14564294 4 64 2.0 2.0 2.0 1.3 75 chr2L 14564219 intergenic CG3473 - chr2L 14564256 intergenic not near genes chr2L 14564294 intergenic not near genes chr2L_4_14560001 chr2L_14560001 RAL-91 152 chr2L 14621377 14621399 chr2L 14621477 14621499 4 100 1.0 2.0 1.5 1.6 122 chr2L 14621377 intron osp - chr2L 14621438 intron osp - chr2L 14621499 intron osp - chr2L_4_14620001 chr2L_14620001 RAL-91 153 chr2L 14642585 14642596 chr2L 14651732 14651759 roo 4 9159 1.5 0.0 0.8 2.2 9174 chr2L 14642585 intron osp - chr2L 14647172 intron osp - chr2L 14651759 intron osp - chr2L_4_14645001 chr2L_14645001 RAL-91 154 chr2L 14803888 14803911 chr2L 14809091 14809114 copia 6 5202 2.0 3.5 2.8 1.6 5226 chr2L 14803888 intergenic not near genes chr2L 14806501 intergenic not near genes chr2L 14809114 intergenic not near genes chr2L_6_14805001 chr2L_14805001 RAL-91 155 chr2L 14854605 14854626 chr2L 14854690 14854711 5 85 1.0 1.0 1.0 2.5 106 chr2L 14854605 intergenic not near genes chr2L 14854658 intergenic not near genes chr2L 14854711 intergenic not near genes chr2L_5_14850001 chr2L_14850001 RAL-91 156 chr2L 14889951 14889983 chr2L 14890376 14890408 jockey 5 425 3.5 2.5 3.0 1.2 457 chr2L 14889951 intergenic not near genes chr2L 14890180 intergenic not near genes chr2L 14890408 intergenic not near genes chr2L_5_14890001 chr2L_14890001 RAL-91 157 chr2L 14968557 14968573 chr2L 14968651 14968660 8 94 0.5 3.5 2.0 2.7 103 chr2L 14968557 intron CG42313 - chr2L 14968608 intron CG42313 - chr2L 14968660 intron CG42313 - chr2L_8_14965001 chr2L_14965001 RAL-91 158 chr2L 15305493 15305517 chr2L 15305582 15305608 4 90 2.5 2.5 2.5 1.1 115 chr2L 15305493 intergenic not near genes chr2L 15305550 intergenic not near genes chr2L 15305608 intergenic not near genes chr2L_4_15305001 chr2L_15305001 RAL-91 159 chr2L 15535289 15535316 chr2L 15535376 15535402 5 87 0.0 1.5 0.8 2.8 113 chr2L 15535289 intergenic not near genes chr2L 15535346 intergenic not near genes chr2L 15535402 intergenic not near genes chr2L_5_15535001 chr2L_15535001 RAL-91 160 chr2L 15544381 15544394 chr2L 15544457 15544470 5 75 2.0 0.5 1.2 2.3 89 chr2L 15544381 intergenic not near genes chr2L 15544426 intergenic not near genes chr2L 15544470 intergenic not near genes chr2L_5_15540001 chr2L_15540001 RAL-91 161 chr2L 15576693 15576720 chr2L 15576773 15576795 6 79 0.5 2.0 1.2 2.7 102 chr2L 15576693 intron kek3 + chr2L 15576744 intron kek3 + chr2L 15576795 intron kek3 + chr2L_6_15575001 chr2L_15575001 RAL-91 162 chr2L 15626366 15626382 chr2L 15626445 15626461 5 78 2.0 2.5 2.2 1.6 95 chr2L 15626366 intergenic not near genes chr2L 15626414 intergenic not near genes chr2L 15626461 intergenic not near genes chr2L_5_15625001 chr2L_15625001 RAL-91 163 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 42 145889 10.0 13.5 11.8 3.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_42_16140001 chr2L_16140001 RAL-91 164 chr2L 16134620 16134651 chr2L 16134720 16134751 6 99 2.0 2.0 2.0 2.0 131 chr2L 16134620 intergenic CG34168 -,CG4892 + chr2L 16134686 intergenic CG34168 -,CG4892 + chr2L 16134751 3` UTR CG34168 - chr2L_6_16130001 chr2L_16130001 RAL-91 165 chr2L 9084336 9084340 chr2L 16217660 16217660 24 7133321 5.5 13.5 9.5 2.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_24_12650001 chr2L_12650001 RAL-91 166 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 15 145889 10.0 13.5 11.8 1.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_16140001 chr2L_16140001 RAL-91 167 chr2L 16226188 16226209 chr2L 16226275 16226296 4 84 1.5 2.5 2.0 1.3 108 chr2L 16226188 intergenic not near genes chr2L 16226242 intergenic not near genes chr2L 16226296 intergenic not near genes chr2L_4_16225001 chr2L_16225001 RAL-91 168 chr2L 16280259 16280287 chr2L 16281423 16281439 1360 12 1163 2.0 2.5 2.2 3.8 1180 chr2L 16280259 intron crp - chr2L 16280849 intron crp - chr2L 16281439 intron crp - chr2L_12_16280001 chr2L_16280001 RAL-91 169 chr2L 16504990 16505013 chr2L 16505100 16505122 6 110 0.0 4.5 2.2 1.9 132 chr2L 16504990 intron Tpr2 + chr2L 16505056 intron Tpr2 + chr2L 16505122 intron Tpr2 + chr2L_6_16505001 chr2L_16505001 RAL-91 170 chr2L 16716954 16716975 chr2L 16717071 16717092 4 116 0.5 2.5 1.5 1.6 138 chr2L 16716954 intron Cyt-c-d + chr2L 16717023 intron Cyt-c-d + chr2L 16717092 intron Cyt-c-d + chr2L_4_16715001 chr2L_16715001 RAL-91 171 chr2L 17005415 17005434 chr2L 17005512 17005530 6 97 2.0 2.5 2.2 1.9 115 chr2L 17005415 intergenic not near genes chr2L 17005472 intergenic not near genes chr2L 17005530 intergenic not near genes chr2L_6_17005001 chr2L_17005001 RAL-91 172 chr2L 17069893 17069904 chr2L 17072994 17073013 6 3115 1.0 1.5 1.2 2.7 3120 chr2L 17069893 intergenic not near genes chr2L 17071453 intergenic not near genes chr2L 17073013 intergenic not near genes chr2L_6_17070001 chr2L_17070001 RAL-91 173 chr2L 17207442 17207467 chr2L 17207821 17207846 4 378 1.0 1.5 1.2 1.8 404 chr2L 17207442 intron beat-IIIc - chr2L 17207644 intron beat-IIIc - chr2L 17207846 intron beat-IIIc - chr2L_4_17205001 chr2L_17205001 RAL-91 174 chr2L 17208147 17208156 chr2L 17208236 17208245 5 88 1.0 1.0 1.0 2.5 98 chr2L 17208147 intron beat-IIIc - chr2L 17208196 intron beat-IIIc - chr2L 17208245 intron beat-IIIc - chr2L_5_17205001 chr2L_17205001 RAL-91 175 chr2L 17273191 17273223 chr2L 17277974 17278006 F-element 14 4782 3.5 3.5 3.5 3.1 4815 chr2L 17273191 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278006 intergenic not near genes chr2L_14_17275001 chr2L_17275001 RAL-91 176 chr2L 17278883 17278907 chr2L 17278965 17278985 4 75 0.5 0.0 0.2 3.3 102 chr2L 17278883 intergenic not near genes chr2L 17278934 intergenic not near genes chr2L 17278985 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-91 177 chr2L 17747993 17748021 chr2L 17748070 17748098 6 77 1.5 0.5 1.0 3.0 105 chr2L 17747993 intron CadN - chr2L 17748046 intron CadN - chr2L 17748098 intron CadN - chr2L_6_17745001 chr2L_17745001 RAL-91 178 chr2L 17796030 17796045 chr2L 17796111 17796126 5 81 0.0 3.0 1.5 2.0 96 chr2L 17796030 intron CadN2 - chr2L 17796078 intron CadN2 - chr2L 17796126 intron CadN2 - chr2L_5_17795001 chr2L_17795001 RAL-91 179 chr2L 17944422 17944451 chr2L 17944585 17944614 4 163 0.5 2.0 1.2 1.8 192 chr2L 17944422 intergenic not near genes chr2L 17944518 intergenic not near genes chr2L 17944614 intergenic not near genes chr2L_4_17940001 chr2L_17940001 RAL-91 180 chr2L 18009764 18009797 chr2L 18009850 18009884 11 86 2.0 2.0 2.0 3.7 120 chr2L 18009764 3` UTR elfless - chr2L 18009824 3` UTR elfless - chr2L 18009884 3` UTR elfless - chr2L_11_18005001 chr2L_18005001 RAL-91 181 chr2L 18051873 18051902 chr2L 18061020 18061049 roo 5 9147 2.0 2.0 2.0 1.7 9176 chr2L 18051873 intron rdo + chr2L 18056461 intron rdo + chr2L 18061049 intron rdo + chr2L_5_18055001 chr2L_18055001 RAL-91 182 chr2L 18235075 18235089 chr2L 18235207 18235207 4 128 0.0 3.5 1.8 1.4 132 chr2L 18235075 intron CG42750 - chr2L 18235141 intron CG42750 - chr2L 18235207 intron CG42750 - chr2L_4_18235001 chr2L_18235001 RAL-91 183 chr2L 18337631 18337660 chr2L 18337707 18337735 5 76 0.5 1.0 0.8 2.8 104 chr2L 18337631 intron Fas3 + chr2L 18337683 intron Fas3 + chr2L 18337735 intron Fas3 + chr2L_5_18335001 chr2L_18335001 RAL-91 184 chr2L 16217660 16217660 chr2L 18622713 18622719 5 2405057 10.5 13.5 12.0 0.4 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_5_17420001 chr2L_17420001 RAL-91 185 chr2L 18741897 18741909 chr2L 18742007 18742021 5 111 29.5 15.0 22.2 0.2 124 chr2L 18741897 intergenic not near genes chr2L 18741959 intergenic not near genes chr2L 18742021 intergenic not near genes chr2L_5_18740001 chr2L_18740001 RAL-91 186 chr2L 18762357 18762380 chr2L 18762449 18762457 11 89 3.5 6.0 4.8 1.9 100 chr2L 18762357 intergenic not near genes chr2L 18762407 intergenic ham - chr2L 18762457 intergenic ham - chr2L_11_18760001 chr2L_18760001 RAL-91 187 chr2L 18812559 18812583 chr2L 18812822 18812846 5 263 3.0 2.0 2.5 1.4 287 chr2L 18812559 intergenic CG17325 +,CG42305 + chr2L 18812702 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812846 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-91 188 chr2L 18876864 18876879 chr2L 18876942 18876957 5 78 1.0 3.0 2.0 1.7 93 chr2L 18876864 intron tup - chr2L 18876910 intron tup - chr2L 18876957 intron tup - chr2L_5_18875001 chr2L_18875001 RAL-91 189 chr2L 18903097 18903121 chr2L 18903194 18903216 4 96 1.5 3.0 2.2 1.2 119 chr2L 18903097 intergenic not near genes chr2L 18903156 intergenic not near genes chr2L 18903216 intergenic not near genes chr2L_4_18900001 chr2L_18900001 RAL-91 190 chr2L 19024096 19024097 chr2L 21768291 21768291 8 2744195 18.0 10.5 14.2 0.5 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_8_20395001 chr2L_20395001 RAL-91 191 chr2L 19159039 19159071 chr2L 19159161 19159193 8 122 1.5 4.5 3.0 2.0 154 chr2L 19159039 intron,3` UTR brat +,CR44977 - chr2L 19159116 intron,3` UTR brat +,CR44977 - chr2L 19159193 intron,3` UTR brat +,CR44977 - chr2L_8_19155001 chr2L_19155001 RAL-91 192 chr2L 19237308 19237331 chr2L 19237408 19237431 4 99 1.5 1.5 1.5 1.6 123 chr2L 19237308 intergenic not near genes chr2L 19237370 intergenic not near genes chr2L 19237431 intergenic not near genes chr2L_4_19235001 chr2L_19235001 RAL-91 193 chr2L 19357551 19357562 chr2L 19357640 19357652 4 90 1.0 3.5 2.2 1.2 101 chr2L 19357551 intron dnt - chr2L 19357602 intron dnt - chr2L 19357652 intron dnt - chr2L_4_19355001 chr2L_19355001 RAL-91 194 chr2L 19369695 19369707 chr2L 19369829 19369841 4 134 3.5 1.5 2.5 1.1 146 chr2L 19369695 intergenic not near genes chr2L 19369768 intergenic not near genes chr2L 19369841 intergenic not near genes chr2L_4_19365001 chr2L_19365001 RAL-91 195 chr2L 19437527 19437532 chr2L 19437614 19437624 4 91 1.5 4.0 2.8 1.1 97 chr2L 19437527 intron CG10237 - chr2L 19437576 intron CG10237 - chr2L 19437624 intron CG10237 - chr2L_4_19435001 chr2L_19435001 RAL-91 196 chr2L 19441065 19441083 chr2L 19441142 19441160 6 77 4.5 2.5 3.5 1.3 95 chr2L 19441065 intron CG10237 - chr2L 19441112 intron CG10237 - chr2L 19441160 5` UTR CG10237 - chr2L_6_19440001 chr2L_19440001 RAL-91 197 chr2L 19544606 19544611 chr2L 19544667 19544687 7 70 9.5 5.0 7.2 0.9 81 chr2L 19544606 exon ref(2)P + chr2L 19544646 exon ref(2)P + chr2L 19544687 exon ref(2)P + chr2L_7_19540001 chr2L_19540001 RAL-91 198 chr2L 19544613 19544628 chr2L 19544664 19544668 9 62 9.0 5.5 7.2 1.1 55 chr2L 19544613 exon ref(2)P + chr2L 19544640 exon ref(2)P + chr2L 19544668 exon ref(2)P + chr2L_9_19540001 chr2L_19540001 RAL-91 199 chr2L 19560843 19560864 chr2L 19560921 19560944 4 79 2.0 0.0 1.0 2.0 101 chr2L 19560843 intron Tep5 + chr2L 19560894 exon Tep5 + chr2L 19560944 exon Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-91 200 chr2L 19561343 19561363 chr2L 19561484 19561503 5 140 2.0 0.5 1.2 2.3 160 chr2L 19561343 exon Tep5 + chr2L 19561423 exon Tep5 + chr2L 19561503 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-91 201 chr2L 19620093 19620127 chr2L 19621082 19621096 jockey 6 984 2.0 1.5 1.8 2.1 1003 chr2L 19620093 intron Lar + chr2L 19620594 intron Lar + chr2L 19621096 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-91 202 chr2L 19652570 19652598 chr2L 19674004 19674032 opus 4 21433 3.0 1.5 2.2 1.2 21462 chr2L 19652570 intron Lar + chr2L 19663301 intron Lar + chr2L 19674032 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-91 203 chr2L 19697139 19697167 chr2L 19697232 19697256 4 92 1.0 2.0 1.5 1.6 117 chr2L 19697139 intron Lar + chr2L 19697198 intron Lar + chr2L 19697256 intron Lar + chr2L_4_19695001 chr2L_19695001 RAL-91 204 chr2L 19703535 19703569 chr2L 19712671 19712705 roo 13 9136 2.0 4.5 3.2 3.1 9170 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712705 intron Lar + chr2L_13_19705001 chr2L_19705001 RAL-91 205 chr2L 19712688 19712721 chr2L 19712771 19712803 6 83 4.0 3.5 3.8 1.2 115 chr2L 19712688 intron Lar + chr2L 19712746 intron Lar + chr2L 19712803 intron Lar + chr2L_6_19710001 chr2L_19710001 RAL-91 206 chr2L 19737361 19737388 chr2L 19740830 19740856 1360 7 3469 3.0 4.5 3.8 1.5 3495 chr2L 19737361 intergenic Nf-YB + chr2L 19739108 intergenic not near genes chr2L 19740856 intergenic not near genes chr2L_7_19735001 chr2L_19735001 RAL-91 207 chr2L 19773161 19773189 chr2L 19773248 19773274 4 86 1.5 0.5 1.0 2.0 113 chr2L 19773161 intergenic not near genes chr2L 19773218 intergenic not near genes chr2L 19773274 intergenic not near genes chr2L_4_19770001 chr2L_19770001 RAL-91 208 chr2L 19911706 19911722 chr2L 19911791 19911811 6 88 6.0 3.5 4.8 1.0 105 chr2L 19911706 intron,3` UTR sick +,CR43097 - chr2L 19911758 intron,3` UTR sick +,CR43097 - chr2L 19911811 intron,3` UTR sick +,CR43097 - chr2L_6_19910001 chr2L_19910001 RAL-91 209 chr2L 19973359 19973387 chr2L 19973435 19973464 7 77 3.0 4.0 3.5 1.6 105 chr2L 19973359 intron CG43861 - chr2L 19973412 intron CG43861 - chr2L 19973464 intron CG43861 - chr2L_7_19970001 chr2L_19970001 RAL-91 210 chr2L 19994659 19994678 chr2L 19994728 19994735 5 72 1.0 1.0 1.0 2.5 76 chr2L 19994659 intron CG43861 - chr2L 19994697 intron CG43861 - chr2L 19994735 intron CG43861 - chr2L_5_19990001 chr2L_19990001 RAL-91 211 chr2L 20027971 20027984 chr2L 20028098 20028112 5 127 3.5 1.5 2.5 1.4 141 chr2L 20027971 5` UTR sNPF + chr2L 20028042 5` UTR sNPF + chr2L 20028112 5` UTR sNPF + chr2L_5_20025001 chr2L_20025001 RAL-91 212 chr2L 20036539 20036551 chr2L 20036623 20036635 5 84 0.5 1.0 0.8 2.8 96 chr2L 20036539 intron sNPF + chr2L 20036587 intron sNPF + chr2L 20036635 intron sNPF + chr2L_5_20035001 chr2L_20035001 RAL-91 213 chr2L 20042773 20042798 chr2L 20042873 20042894 8 98 2.0 3.5 2.8 2.1 121 chr2L 20042773 intron sNPF + chr2L 20042834 intron sNPF + chr2L 20042894 intron sNPF + chr2L_8_20040001 chr2L_20040001 RAL-91 214 chr2L 20046559 20046566 chr2L 20046647 20046654 5 89 2.0 1.0 1.5 2.0 95 chr2L 20046559 intron sNPF + chr2L 20046606 intron sNPF + chr2L 20046654 intron sNPF + chr2L_5_20045001 chr2L_20045001 RAL-91 215 chr2L 20272120 20272139 chr2L 20282831 20282850 copia 7 10711 1.0 2.5 1.8 2.5 10730 chr2L 20272120 intergenic not near genes chr2L 20277485 intergenic not near genes chr2L 20282850 intergenic not near genes chr2L_7_20275001 chr2L_20275001 RAL-91 216 chr2L 20303162 20303187 chr2L 20310630 20310655 blood 5 7468 0.0 0.0 0.0 5.0 7493 chr2L 20303162 intergenic not near genes chr2L 20306908 intergenic not near genes chr2L 20310655 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-91 217 chr2L 20376073 20376097 chr2L 20376192 20376215 13 119 1.5 4.5 3.0 3.2 142 chr2L 20376073 intergenic not near genes chr2L 20376144 intergenic not near genes chr2L 20376215 intergenic not near genes chr2L_13_20375001 chr2L_20375001 RAL-91 218 chr2L 20498689 20498706 chr2L 20498788 20498800 7 98 4.0 6.0 5.0 1.2 111 chr2L 20498689 intergenic not near genes chr2L 20498744 intergenic not near genes chr2L 20498800 intergenic not near genes chr2L_7_20495001 chr2L_20495001 RAL-91 219 chr2L 20576222 20576246 chr2L 20583690 20583713 blood 5 7466 1.5 1.5 1.5 2.0 7491 chr2L 20576222 intergenic not near genes chr2L 20579968 intergenic not near genes chr2L 20583713 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-91 220 chr2L 20597089 20597120 chr2L 20597165 20597197 9 73 0.5 3.0 1.8 3.2 108 chr2L 20597089 intron CR44909 - chr2L 20597143 intron CR44909 - chr2L 20597197 intron CR44909 - chr2L_9_20595001 chr2L_20595001 RAL-91 221 chr2L 20611249 20611267 chr2L 20611324 20611355 6 86 0.0 1.5 0.8 3.3 106 chr2L 20611249 intron CR44909 - chr2L 20611302 intron CR44909 - chr2L 20611355 intron CR44909 - chr2L_6_20610001 chr2L_20610001 RAL-91 222 chr2L 20626102 20626124 chr2L 20626208 20626230 4 106 1.5 0.5 1.0 2.0 128 chr2L 20626102 3` UTR CR44909 - chr2L 20626166 3` UTR CR44909 - chr2L 20626230 intergenic CR44909 - chr2L_4_20625001 chr2L_20625001 RAL-91 223 chr2L 20722356 20722388 chr2L 20722552 20722584 11 196 2.0 2.0 2.0 3.7 228 chr2L 20722356 5` UTR CR45306 + chr2L 20722470 intergenic CR45306 + chr2L 20722584 intergenic CR45306 + chr2L_11_20720001 chr2L_20720001 RAL-91 224 chr2L 20734456 20734486 chr2L 20737321 20737352 12 2863 2.5 16.5 9.5 1.1 2896 chr2L 20734456 intergenic CG9318 -,Fs(2)Ket + chr2L 20735904 intron Fs(2)Ket + chr2L 20737352 exon Fs(2)Ket + chr2L_12_20735001 chr2L_20735001 RAL-91 225 chr2L 20734768 20734799 chr2L 20737400 20737431 13 2634 6.5 30.0 18.2 0.7 2663 chr2L 20734768 intergenic Fs(2)Ket +,CG9318 - chr2L 20736100 intron Fs(2)Ket + chr2L 20737431 exon Fs(2)Ket + chr2L_13_20735001 chr2L_20735001 RAL-91 226 chr2L 20762664 20762684 chr2L 20762773 20762794 6 110 4.0 2.5 3.2 1.4 130 chr2L 20762664 intron dia + chr2L 20762729 intron dia + chr2L 20762794 intron dia + chr2L_6_20760001 chr2L_20760001 RAL-91 227 chr2L 20901470 20901485 chr2L 20902634 20902649 1360 4 1164 0.0 0.0 0.0 4.0 1179 chr2L 20901470 intron,intron CG43739 -,sky - chr2L 20902060 intron,intron CG43739 -,sky - chr2L 20902649 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-91 228 chr2L 20927289 20927295 chr2L 20927554 20927561 4 266 8.5 13.0 10.8 0.3 272 chr2L 20927289 exon CG9272 - chr2L 20927425 exon CG9272 - chr2L 20927561 exon CG9272 - chr2L_4_20925001 chr2L_20925001 RAL-91 229 chr2L 20967081 20967108 chr2L 20967167 20967194 8 86 2.0 2.0 2.0 2.7 113 chr2L 20967081 3` UTR CG42238 - chr2L 20967138 3` UTR CG42238 - chr2L 20967194 3` UTR CG42238 - chr2L_8_20965001 chr2L_20965001 RAL-91 230 chr2L 20984754 20984768 chr2L 20984830 20984860 5 86 2.0 2.0 2.0 1.7 106 chr2L 20984754 intron CG42238 - chr2L 20984807 intron CG42238 - chr2L 20984860 intron CG42238 - chr2L_5_20980001 chr2L_20980001 RAL-91 231 chr2L 20986916 20986932 chr2L 20987253 20987269 5 337 2.5 4.0 3.2 1.2 353 chr2L 20986916 intron CG42238 - chr2L 20987092 intron CG42238 - chr2L 20987269 intron CG42238 - chr2L_5_20985001 chr2L_20985001 RAL-91 232 chr2L 20991044 20991061 chr2L 20991122 20991139 5 78 3.5 3.0 3.2 1.2 95 chr2L 20991044 intron CG42238 - chr2L 20991092 intron CG42238 - chr2L 20991139 intron CG42238 - chr2L_5_20990001 chr2L_20990001 RAL-91 233 chr2L 21020274 21020307 chr2L 21023951 21023984 NOF 8 3677 1.0 4.0 2.5 2.3 3710 chr2L 21020274 intron CG42238 - chr2L 21022129 intron CG42238 - chr2L 21023984 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-91 234 chr2L 21196240 21196260 chr2L 21196342 21196364 6 104 4.0 1.5 2.8 1.6 124 chr2L 21196240 intron Ret - chr2L 21196302 intron Ret - chr2L 21196364 intron Ret - chr2L_6_21195001 chr2L_21195001 RAL-91 235 chr2L 21771235 21771260 chr2L 21771342 21771366 8 107 2.0 2.0 2.0 2.7 131 chr2L 21771235 intron CG31612 - chr2L 21771300 intron CG31612 - chr2L 21771366 intron CG31612 - chr2L_8_21770001 chr2L_21770001 RAL-91 236 chr2L 21771988 21772009 chr2L 21772067 21772088 4 79 1.5 0.0 0.8 2.2 100 chr2L 21771988 intron CG31612 - chr2L 21772038 intron CG31612 - chr2L 21772088 intron CG31612 - chr2L_4_21770001 chr2L_21770001 RAL-91 237 chr2L 21825145 21825175 chr2L 21825579 21825608 5 434 1.5 2.5 2.0 1.7 463 chr2L 21825145 intergenic not near genes chr2L 21825376 intergenic not near genes chr2L 21825608 intergenic not near genes chr2L_5_21825001 chr2L_21825001 RAL-91 238 chr2L 21981689 21981709 chr2L 21990853 21990874 roo 4 9164 0.0 2.5 1.2 1.8 9185 chr2L 21981689 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990874 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-91 239 chr2L 22169735 22169740 chr2L 22169817 22169828 4 86 3.0 3.0 3.0 1.0 93 chr2L 22169735 5` UTR CR44809 + chr2L 22169782 5` UTR CR44809 + chr2L 22169828 5` UTR CR44809 + chr2L_4_22165001 chr2L_22165001 RAL-91 240 chr2L 22258617 22258648 chr2L 22260741 22260772 G6 9 2124 0.5 4.5 2.5 2.6 2155 chr2L 22258617 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260772 intergenic not near genes chr2L_9_22255001 chr2L_22255001 RAL-91 241 chr2L 22693893 22693912 chr2L 22693976 22693995 8 82 1.5 1.5 1.5 3.2 102 chr2L 22693893 intron CG40006 - chr2L 22693944 intron CG40006 - chr2L 22693995 intron CG40006 - chr2L_8_22690001 chr2L_22690001 RAL-91 242 chr2L 22774483 22774516 chr2L 22774563 22774596 5 75 2.5 1.5 2.0 1.7 113 chr2L 22774483 intergenic not near genes chr2L 22774540 intergenic not near genes chr2L 22774596 intergenic not near genes chr2L_5_22770001 chr2L_22770001 RAL-91 243 chr2R 552752 552771 chr2R 553970 553989 1360 4 1218 0.5 0.0 0.2 3.3 1237 chr2R 552752 intron CG40378 + chr2R 553370 intron CG40378 + chr2R 553989 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-91 244 chr2R 4634154 4634183 chr2R 4634233 4634236 6 70 2.5 1.0 1.8 2.1 82 chr2R 4634154 intergenic not near genes chr2R 4634195 intergenic not near genes chr2R 4634236 intergenic not near genes chr2R_6_4630001 chr2R_4630001 RAL-91 245 chr2R 5209781 5209795 chr2R 5210314 5210328 5 533 3.0 0.0 1.5 2.0 547 chr2R 5209781 intron Nipped-A - chr2R 5210054 intron Nipped-A - chr2R 5210328 intron Nipped-A - chr2R_5_5210001 chr2R_5210001 RAL-91 246 chr2R 5356360 5356388 chr2R 5356440 5356466 6 76 1.5 1.5 1.5 2.4 106 chr2R 5356360 intergenic not near genes chr2R 5356413 intergenic not near genes chr2R 5356466 intergenic not near genes chr2R_6_5355001 chr2R_5355001 RAL-91 247 chr2R 5441896 5441915 chr2R 5441976 5441997 5 81 0.0 3.0 1.5 2.0 101 chr2R 5441896 intron laccase2 + chr2R 5441946 intron laccase2 + chr2R 5441997 intron laccase2 + chr2R_5_5440001 chr2R_5440001 RAL-91 248 chr2R 5621021 5621050 chr2R 5621158 5621188 12 135 1.5 4.0 2.8 3.2 167 chr2R 5621021 intergenic not near genes chr2R 5621104 intergenic not near genes chr2R 5621188 intergenic not near genes chr2R_12_5620001 chr2R_5620001 RAL-91 249 chr2R 5621371 5621386 chr2R 5621451 5621453 5 77 6.0 1.5 3.8 1.0 82 chr2R 5621371 intergenic not near genes chr2R 5621412 intergenic not near genes chr2R 5621453 intergenic not near genes chr2R_5_5620001 chr2R_5620001 RAL-91 250 chr2R 5640020 5640043 chr2R 5640092 5640102 4 70 2.5 1.0 1.8 1.4 82 chr2R 5640020 intergenic not near genes chr2R 5640061 intergenic not near genes chr2R 5640102 intergenic not near genes chr2R_4_5640001 chr2R_5640001 RAL-91 251 chr2R 5655417 5655431 chr2R 5655497 5655511 5 79 4.0 0.5 2.2 1.6 94 chr2R 5655417 exon CG1344 + chr2R 5655464 exon CG1344 + chr2R 5655511 exon CG1344 + chr2R_5_5655001 chr2R_5655001 RAL-91 252 chr2R 5655879 5655908 chr2R 5655967 5655996 5 88 2.0 0.5 1.2 2.3 117 chr2R 5655879 3` UTR CG1344 + chr2R 5655938 3` UTR CG1344 + chr2R 5655996 3` UTR CG1344 + chr2R_5_5655001 chr2R_5655001 RAL-91 253 chr2R 5812162 5812174 chr2R 5812239 5812251 5 77 1.5 3.5 2.5 1.4 89 chr2R 5812162 intron dpr12 + chr2R 5812206 intron dpr12 + chr2R 5812251 intron dpr12 + chr2R_5_5810001 chr2R_5810001 RAL-91 254 chr2R 5852032 5852054 chr2R 5852136 5852152 6 103 3.5 3.0 3.2 1.4 120 chr2R 5852032 intron dpr12 + chr2R 5852092 intron dpr12 + chr2R 5852152 intron dpr12 + chr2R_6_5850001 chr2R_5850001 RAL-91 255 chr2R 6096732 6096751 chr2R 6101910 6101921 BS 11 5187 5.5 4.0 4.8 1.9 5189 chr2R 6096732 intron EcR - chr2R 6099326 intron EcR - chr2R 6101921 intron EcR - chr2R_11_6095001 chr2R_6095001 RAL-91 256 chr2R 6494533 6494551 chr2R 6499295 6499313 F-element 5 4762 3.5 2.0 2.8 1.3 4780 chr2R 6494533 intergenic not near genes chr2R 6496923 intergenic not near genes chr2R 6499313 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-91 257 chr2R 6593322 6593353 chr2R 6593417 6593450 6 96 1.5 3.0 2.2 1.9 128 chr2R 6593322 intron jing + chr2R 6593386 intron jing + chr2R 6593450 intron jing + chr2R_6_6590001 chr2R_6590001 RAL-91 258 chr2R 6759001 6759016 chr2R 6759080 6759094 7 79 7.5 1.0 4.2 1.3 93 chr2R 6759001 intergenic CG9436 - chr2R 6759048 intergenic CG9436 - chr2R 6759094 intergenic CG9436 - chr2R_7_6755001 chr2R_6755001 RAL-91 259 chr2R 6759019 6759029 chr2R 6759079 6759108 4 74 5.0 1.0 3.0 1.0 89 chr2R 6759019 intergenic CG9436 - chr2R 6759064 intergenic CG9436 - chr2R 6759108 intergenic CG9436 - chr2R_4_6755001 chr2R_6755001 RAL-91 260 chr2R 6865369 6865400 chr2R 6865453 6865484 14 83 2.5 1.5 2.0 4.7 115 chr2R 6865369 exon coro - chr2R 6865426 intron coro - chr2R 6865484 intron coro - chr2R_14_6865001 chr2R_6865001 RAL-91 261 chr2R 6866183 6866211 chr2R 6866280 6866298 8 96 3.0 4.5 3.8 1.7 115 chr2R 6866183 intron coro - chr2R 6866240 intron coro - chr2R 6866298 intron coro - chr2R_8_6865001 chr2R_6865001 RAL-91 262 chr2R 6906424 6906456 chr2R 6906523 6906554 8 94 2.5 0.0 1.2 3.6 130 chr2R 6906424 intron CG30158 + chr2R 6906489 intron CG30158 + chr2R 6906554 intron CG30158 + chr2R_8_6905001 chr2R_6905001 RAL-91 263 chr2R 7095964 7095997 chr2R 7096064 7096097 16 98 3.0 4.0 3.5 3.6 133 chr2R 7095964 intron esn + chr2R 7096030 intron esn + chr2R 7096097 intron esn + chr2R_16_7095001 chr2R_7095001 RAL-91 264 chr2R 7164277 7164287 chr2R 7164468 7164478 7 191 1.5 7.0 4.2 1.3 201 chr2R 7164277 intron pk + chr2R 7164378 intron pk + chr2R 7164478 intron pk + chr2R_7_7160001 chr2R_7160001 RAL-91 265 chr2R 7235821 7235846 chr2R 7240913 7240938 jockey 8 5092 5.0 2.0 3.5 1.8 5117 chr2R 7235821 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240938 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-91 266 chr2R 7434894 7434918 chr2R 7439195 7439219 Juan 8 4301 2.0 1.5 1.8 2.9 4325 chr2R 7434894 intergenic so + chr2R 7437056 intergenic not near genes chr2R 7439219 intergenic not near genes chr2R_8_7435001 chr2R_7435001 RAL-91 267 chr2R 7551683 7551716 chr2R 7551774 7551807 11 90 5.5 3.5 4.5 2.0 124 chr2R 7551683 intron Corin + chr2R 7551745 intron Corin + chr2R 7551807 intron Corin + chr2R_11_7550001 chr2R_7550001 RAL-91 268 chr2R 7642877 7642892 chr2R 7642957 7642972 5 80 2.0 3.5 2.8 1.3 95 chr2R 7642877 intron CG43340 + chr2R 7642924 intron CG43340 + chr2R 7642972 intron CG43340 + chr2R_5_7640001 chr2R_7640001 RAL-91 269 chr2R 7815697 7815705 chr2R 7822166 7822174 Burdock 4 6469 1.5 5.5 3.5 0.9 6477 chr2R 7815697 intergenic CG1882 + chr2R 7818936 intergenic not near genes chr2R 7822174 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-91 270 chr2R 7869191 7869213 chr2R 7873977 7873988 Doc 6 4784 5.0 3.0 4.0 1.2 4797 chr2R 7869191 intron Dgk - chr2R 7871590 intron Dgk - chr2R 7873988 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-91 271 chr2R 7897141 7897152 chr2R 7897207 7897241 6 85 0.0 3.5 1.8 2.1 100 chr2R 7897141 intron CG30377 + chr2R 7897191 intron CG30377 + chr2R 7897241 intron CG30377 + chr2R_6_7895001 chr2R_7895001 RAL-91 272 chr2R 7901692 7901718 chr2R 7901853 7901886 14 161 3.0 1.0 2.0 4.7 194 chr2R 7901692 intron CG30377 + chr2R 7901789 intron CG30377 + chr2R 7901886 intron CG30377 + chr2R_14_7900001 chr2R_7900001 RAL-91 273 chr2R 7916430 7916457 chr2R 7916515 7916542 9 84 4.5 2.5 3.5 2.0 112 chr2R 7916430 5` UTR CG12159 - chr2R 7916486 intergenic CG12159 -,Cul1 + chr2R 7916542 intergenic CG12159 -,Cul1 + chr2R_9_7915001 chr2R_7915001 RAL-91 274 chr2R 8249574 8249594 chr2R 8249656 8249675 4 82 0.5 0.0 0.2 3.3 101 chr2R 8249574 5` UTR CG44439 - chr2R 8249624 intergenic CG44439 - chr2R 8249675 intergenic CG44439 - chr2R_4_8245001 chr2R_8245001 RAL-91 275 chr2R 8277638 8277667 chr2R 8277729 8277762 6 93 2.0 1.0 1.5 2.4 124 chr2R 8277638 5` UTR CR44280 + chr2R 8277700 5` UTR CR44280 + chr2R 8277762 5` UTR CR44280 + chr2R_6_8275001 chr2R_8275001 RAL-91 276 chr2R 8330864 8330890 chr2R 8331350 8331376 roo 11 484 2.0 1.0 1.5 4.4 512 chr2R 8330864 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331376 intron pdm3 + chr2R_11_8330001 chr2R_8330001 RAL-91 277 chr2R 8332689 8332707 chr2R 8332814 8332832 6 125 2.5 1.0 1.8 2.1 143 chr2R 8332689 intron pdm3 + chr2R 8332760 intron pdm3 + chr2R 8332832 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-91 278 chr2R 8379796 8379817 chr2R 8379889 8379913 10 95 4.0 2.5 3.2 2.4 117 chr2R 8379796 intron pdm3 + chr2R 8379854 intron pdm3 + chr2R 8379913 intron pdm3 + chr2R_10_8375001 chr2R_8375001 RAL-91 279 chr2R 8398230 8398235 chr2R 8402996 8403016 Doc 8 4775 7.5 5.5 6.5 1.1 4786 chr2R 8398230 intron CG2121 - chr2R 8400623 intron CG2121 - chr2R 8403016 intron CG2121 - chr2R_8_8400001 chr2R_8400001 RAL-91 280 chr2R 8419360 8419392 chr2R 8419443 8419475 7 83 3.5 4.0 3.8 1.5 115 chr2R 8419360 intergenic not near genes chr2R 8419418 intergenic not near genes chr2R 8419475 intergenic not near genes chr2R_7_8415001 chr2R_8415001 RAL-91 281 chr2R 8483986 8483989 chr2R 8484054 8484065 4 73 1.0 2.0 1.5 1.6 79 chr2R 8483986 intron mtt - chr2R 8484026 intron mtt - chr2R 8484065 intron mtt - chr2R_4_8480001 chr2R_8480001 RAL-91 282 chr2R 8536197 8536229 chr2R 8536429 8536461 5 231 2.5 1.5 2.0 1.7 264 chr2R 8536197 intergenic not near genes chr2R 8536329 intergenic not near genes chr2R 8536461 intergenic not near genes chr2R_5_8535001 chr2R_8535001 RAL-91 283 chr2R 8564266 8564298 chr2R 8565269 8565301 10 1002 7.5 26.5 17.0 0.6 1035 chr2R 8564266 3` UTR Cyp6a14 - chr2R 8564784 intron Cyp6a14 - chr2R 8565301 exon Cyp6a14 - chr2R_10_8560001 chr2R_8560001 RAL-91 284 chr2R 8563666 8563700 chr2R 8565967 8566003 14 2303 29.0 22.5 25.8 0.5 2337 chr2R 8563666 intergenic not near genes chr2R 8564834 exon Cyp6a14 - chr2R 8566003 5` UTR Cyp6a14 - chr2R_14_8560001 chr2R_8560001 RAL-91 285 chr2R 8566030 8566064 chr2R 8566982 8567010 1360 5 950 3.5 0.0 1.8 1.8 980 chr2R 8566030 5` UTR Cyp6a14 - chr2R 8566520 5` UTR Cyp6a14 - chr2R 8567010 5` UTR Cyp6a14 - chr2R_5_8565001 chr2R_8565001 RAL-91 286 chr2R 8653996 8654015 chr2R 8654082 8654101 4 84 0.5 5.0 2.8 1.1 105 chr2R 8653996 intron ptc + chr2R 8654048 intron ptc + chr2R 8654101 intron ptc + chr2R_4_8650001 chr2R_8650001 RAL-91 287 chr2R 8864858 8864882 chr2R 8865088 8865103 8 227 4.0 1.0 2.5 2.3 245 chr2R 8864858 intron RyR + chr2R 8864980 intron RyR + chr2R 8865103 intron RyR + chr2R_8_8860001 chr2R_8860001 RAL-91 288 chr2R 9052710 9052732 chr2R 9052791 9052813 6 81 0.0 2.5 1.2 2.7 103 chr2R 9052710 intron CG13743 - chr2R 9052762 intron CG13743 - chr2R 9052813 intron CG13743 - chr2R_6_9050001 chr2R_9050001 RAL-91 289 chr2R 9075900 9075935 chr2R 9076035 9076070 17 133 3.0 1.5 2.2 5.3 170 chr2R 9075900 exon ana + chr2R 9075985 intron ana + chr2R 9076070 intron ana + chr2R_17_9075001 chr2R_9075001 RAL-91 290 chr2R 9151305 9151327 chr2R 9157775 9157793 Burdock 4 6469 3.5 2.0 2.8 1.1 6488 chr2R 9151305 3` UTR CG30345 + chr2R 9154549 intergenic not near genes chr2R 9157793 intergenic CG8008 - chr2R_4_9150001 chr2R_9150001 RAL-91 291 chr2R 9190339 9190353 chr2R 9190692 9190707 5 353 1.5 4.0 2.8 1.3 368 chr2R 9190339 intron,intron CG45085 -,CG8026 - chr2R 9190523 intron,intron CG45085 -,CG8026 - chr2R 9190707 intron,intron CG45085 -,CG8026 - chr2R_5_9190001 chr2R_9190001 RAL-91 292 chr2R 9212691 9212719 chr2R 9213177 9213191 roo 8 483 3.5 5.5 4.5 1.5 500 chr2R 9212691 intergenic CR45309 + chr2R 9212941 intergenic CR45309 + chr2R 9213191 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-91 293 chr2R 9213637 9213651 chr2R 9213713 9213717 6 77 0.0 2.5 1.2 2.7 80 chr2R 9213637 5` UTR CR45309 + chr2R 9213677 5` UTR CR45309 + chr2R 9213717 5` UTR CR45309 + chr2R_6_9210001 chr2R_9210001 RAL-91 294 chr2R 9230227 9230242 chr2R 9230305 9230322 10 77 5.5 5.5 5.5 1.5 95 chr2R 9230227 intron hig - chr2R 9230274 intron hig - chr2R 9230322 exon hig - chr2R_10_9230001 chr2R_9230001 RAL-91 295 chr2R 9292257 9292275 chr2R 9292422 9292439 4 164 3.5 4.5 4.0 0.8 182 chr2R 9292257 5` UTR Drep-2 + chr2R 9292348 5` UTR Drep-2 + chr2R 9292439 5` UTR Drep-2 + chr2R_4_9290001 chr2R_9290001 RAL-91 296 chr2R 9368130 9368138 chr2R 9368206 9368212 6 76 7.0 0.5 3.8 1.2 82 chr2R 9368130 intron CG13954 - chr2R 9368171 intron CG13954 - chr2R 9368212 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-91 297 chr2R 9368140 9368153 chr2R 9368202 9368212 5 68 3.0 0.5 1.8 1.8 72 chr2R 9368140 intron CG13954 - chr2R 9368176 intron CG13954 - chr2R 9368212 intron CG13954 - chr2R_5_9365001 chr2R_9365001 RAL-91 298 chr2R 9378111 9378138 chr2R 9378192 9378220 10 81 1.5 2.5 2.0 3.3 109 chr2R 9378111 intron CG13954 - chr2R 9378166 intron CG13954 - chr2R 9378220 intron CG13954 - chr2R_10_9375001 chr2R_9375001 RAL-91 299 chr2R 9378414 9378423 chr2R 9378726 9378756 4 328 1.0 3.0 2.0 1.3 342 chr2R 9378414 intron CG13954 - chr2R 9378585 intron CG13954 - chr2R 9378756 intron CG13954 - chr2R_4_9375001 chr2R_9375001 RAL-91 300 chr2R 9391064 9391082 chr2R 9391625 9391627 7 559 1.5 2.5 2.0 2.3 563 chr2R 9391064 intron l(2)03659 + chr2R 9391346 exon l(2)03659 + chr2R 9391627 exon l(2)03659 + chr2R_7_9390001 chr2R_9390001 RAL-91 301 chr2R 9561828 9561847 chr2R 9561913 9561935 6 87 1.0 1.0 1.0 3.0 107 chr2R 9561828 3` UTR,intron CR45281 -,CG1809 + chr2R 9561882 3` UTR,intron CR45281 -,CG1809 + chr2R 9561935 3` UTR,intron CR45281 -,CG1809 + chr2R_6_9560001 chr2R_9560001 RAL-91 302 chr2R 9699419 9699441 chr2R 9699503 9699504 7 83 2.0 2.0 2.0 2.3 85 chr2R 9699419 intergenic not near genes chr2R 9699462 intergenic not near genes chr2R 9699504 intergenic not near genes chr2R_7_9695001 chr2R_9695001 RAL-91 303 chr2R 9726610 9726629 chr2R 9734161 9734180 17.6 5 7551 3.0 0.0 1.5 2.0 7570 chr2R 9726610 intron sqa - chr2R 9730395 intron sqa - chr2R 9734180 intron sqa - chr2R_5_9730001 chr2R_9730001 RAL-91 304 chr2R 9945440 9945467 chr2R 9945636 9945663 BS 8 196 1.5 1.5 1.5 3.2 223 chr2R 9945440 intron Mef2 - chr2R 9945552 intron Mef2 - chr2R 9945663 intron Mef2 - chr2R_8_9945001 chr2R_9945001 RAL-91 305 chr2R 10005561 10005585 chr2R 10005657 10005682 4 97 1.0 1.5 1.2 1.8 121 chr2R 10005561 intron Pka-R2 - chr2R 10005622 intron Pka-R2 - chr2R 10005682 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-91 306 chr2R 10005847 10005871 chr2R 10007012 10007034 1360 6 1162 3.0 6.0 4.5 1.1 1187 chr2R 10005847 intron Pka-R2 - chr2R 10006440 intron Pka-R2 - chr2R 10007034 intron Pka-R2 - chr2R_6_10005001 chr2R_10005001 RAL-91 307 chr2R 10005872 10005877 chr2R 10007011 10007040 1360 4 1156 3.0 5.0 4.0 0.8 1168 chr2R 10005872 intron Pka-R2 - chr2R 10006456 intron Pka-R2 - chr2R 10007040 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-91 308 chr2R 10132201 10132216 chr2R 10132281 10132296 7 80 2.5 5.5 4.0 1.4 95 chr2R 10132201 intron gem + chr2R 10132248 intron gem + chr2R 10132296 intron gem + chr2R_7_10130001 chr2R_10130001 RAL-91 309 chr2R 10266504 10266530 chr2R 10266594 10266621 7 91 6.5 3.0 4.8 1.2 117 chr2R 10266504 intron CG12910 + chr2R 10266562 intron CG12910 + chr2R 10266621 intron CG12910 + chr2R_7_10265001 chr2R_10265001 RAL-91 310 chr2R 10385229 10385251 chr2R 10385339 10385361 9 110 1.5 1.5 1.5 3.6 132 chr2R 10385229 intron CG42732 - chr2R 10385295 intron CG42732 - chr2R 10385361 intron CG42732 - chr2R_9_10385001 chr2R_10385001 RAL-91 311 chr2R 10387978 10388003 chr2R 10388072 10388078 4 91 0.0 6.0 3.0 1.0 100 chr2R 10387978 intron CG42732 - chr2R 10388028 intron CG42732 - chr2R 10388078 intron CG42732 - chr2R_4_10385001 chr2R_10385001 RAL-91 312 chr2R 10457302 10457331 chr2R 10457387 10457416 13 85 4.0 2.5 3.2 3.1 114 chr2R 10457302 intron,intron Galphao +,Cyp49a1 - chr2R 10457359 intron,intron Galphao +,Cyp49a1 - chr2R 10457416 intron,intron Galphao +,Cyp49a1 - chr2R_13_10455001 chr2R_10455001 RAL-91 313 chr2R 10469025 10469032 chr2R 10469150 10469158 6 126 8.5 5.0 6.8 0.8 133 chr2R 10469025 intron CG11777 + chr2R 10469092 intron CG11777 + chr2R 10469158 intron CG11777 + chr2R_6_10465001 chr2R_10465001 RAL-91 314 chr2R 10469038 10469054 chr2R 10469149 10469180 10 124 3.0 4.5 3.8 2.1 142 chr2R 10469038 intron CG11777 + chr2R 10469109 intron CG11777 + chr2R 10469180 intron CG11777 + chr2R_10_10465001 chr2R_10465001 RAL-91 315 chr2R 10516331 10516339 chr2R 10516388 10516420 5 75 0.0 2.0 1.0 2.5 89 chr2R 10516331 intron lola - chr2R 10516376 intron lola - chr2R 10516420 intron lola - chr2R_5_10515001 chr2R_10515001 RAL-91 316 chr2R 10644067 10644081 chr2R 10644145 10644159 6 78 1.0 0.5 0.8 3.3 92 chr2R 10644067 intron Git - chr2R 10644113 intron Git - chr2R 10644159 intron Git - chr2R_6_10640001 chr2R_10640001 RAL-91 317 chr2R 10759254 10759276 chr2R 10759336 10759357 9 80 4.0 5.5 4.8 1.6 103 chr2R 10759254 intron CG33144 - chr2R 10759306 intron CG33144 - chr2R 10759357 intron CG33144 - chr2R_9_10755001 chr2R_10755001 RAL-91 318 chr2R 10800105 10800136 chr2R 10801588 10801618 18 1481 4.0 16.0 10.0 1.6 1513 chr2R 10800105 intergenic wde - chr2R 10800862 exon wde - chr2R 10801618 exon wde - chr2R_18_10800001 chr2R_10800001 RAL-91 319 chr2R 10937800 10937828 chr2R 10937935 10937966 5 137 0.0 1.5 0.8 2.8 166 chr2R 10937800 intergenic not near genes chr2R 10937883 intergenic not near genes chr2R 10937966 intergenic Spn47C - chr2R_5_10935001 chr2R_10935001 RAL-91 320 chr2R 10948027 10948062 chr2R 10955578 10955584 17.6 13 7548 1.0 4.0 2.5 3.7 7557 chr2R 10948027 intergenic not near genes chr2R 10951806 intergenic not near genes chr2R 10955584 intergenic not near genes chr2R_13_10950001 chr2R_10950001 RAL-91 321 chr2R 11009819 11009848 chr2R 11018989 11019008 roo 4 9168 1.0 1.0 1.0 2.0 9189 chr2R 11009819 intron luna - chr2R 11014414 intron luna - chr2R 11019008 intron luna - chr2R_4_11010001 chr2R_11010001 RAL-91 322 chr2R 11260519 11260545 chr2R 11260625 11260651 6 106 1.5 1.5 1.5 2.4 132 chr2R 11260519 intergenic not near genes chr2R 11260585 intergenic Cpr47Ed - chr2R 11260651 intergenic Cpr47Ed - chr2R_6_11260001 chr2R_11260001 RAL-91 323 chr2R 11344145 11344158 chr2R 11344240 11344254 4 96 0.0 1.5 0.8 2.2 109 chr2R 11344145 intergenic alphaTry - chr2R 11344200 intergenic alphaTry - chr2R 11344254 intergenic alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-91 324 chr2R 11472649 11472665 chr2R 11473846 11473862 pogo 5 1197 2.0 1.5 1.8 1.8 1213 chr2R 11472649 intergenic not near genes chr2R 11473256 intergenic not near genes chr2R 11473862 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-91 325 chr2R 11494598 11494628 chr2R 11494686 11494717 9 87 1.0 1.0 1.0 4.5 119 chr2R 11494598 intron inv + chr2R 11494658 intron inv + chr2R 11494717 intron inv + chr2R_9_11490001 chr2R_11490001 RAL-91 326 chr2R 11577173 11577186 chr2R 11577249 11577264 5 78 3.0 2.5 2.8 1.3 91 chr2R 11577173 intergenic not near genes chr2R 11577218 intergenic not near genes chr2R 11577264 intergenic not near genes chr2R_5_11575001 chr2R_11575001 RAL-91 327 chr2R 11636086 11636112 chr2R 11636177 11636204 8 91 1.5 4.0 2.8 2.1 118 chr2R 11636086 intron CG9005 - chr2R 11636145 intron CG9005 - chr2R 11636204 intron CG9005 - chr2R_8_11635001 chr2R_11635001 RAL-91 328 chr2R 11674998 11675019 chr2R 11675078 11675099 9 80 0.5 2.0 1.2 4.1 101 chr2R 11674998 intron Roc2 - chr2R 11675048 intron Roc2 - chr2R 11675099 intron Roc2 - chr2R_9_11675001 chr2R_11675001 RAL-91 329 chr2R 11822992 11823005 chr2R 11823066 11823082 4 76 0.0 3.5 1.8 1.4 90 chr2R 11822992 intergenic not near genes chr2R 11823037 intergenic not near genes chr2R 11823082 intergenic not near genes chr2R_4_11820001 chr2R_11820001 RAL-91 330 chr2R 11834913 11834940 chr2R 11835185 11835212 13 271 1.5 6.0 3.8 2.7 299 chr2R 11834913 intron Sobp - chr2R 11835062 intron Sobp - chr2R 11835212 intron Sobp - chr2R_13_11835001 chr2R_11835001 RAL-91 331 chr2R 11993315 11993345 chr2R 11993634 11993664 8 319 1.5 2.0 1.8 2.9 349 chr2R 11993315 3` UTR CR45319 - chr2R 11993490 3` UTR CR45319 - chr2R 11993664 3` UTR CR45319 - chr2R_8_11990001 chr2R_11990001 RAL-91 332 chr2R 8518778 8518804 chr2R 12066172 12066201 15 3547396 5.5 9.5 7.5 1.8 3547423 chr2R 8518778 intron mtt - chr2R 10292490 intron CAP + chr2R 12066201 intron CG8888 - chr2R_15_10290001 chr2R_10290001 RAL-91 333 chr2R 12128052 12128081 chr2R 12128154 12128184 5 103 1.5 2.5 2.0 1.7 132 chr2R 12128052 intergenic not near genes chr2R 12128118 intergenic not near genes chr2R 12128184 intergenic not near genes chr2R_5_12125001 chr2R_12125001 RAL-91 334 chr2R 12377495 12377525 chr2R 12377617 12377645 5 121 4.5 2.0 3.2 1.2 150 chr2R 12377495 intergenic Cpr49Aa + chr2R 12377570 intergenic Cpr49Aa + chr2R 12377645 intergenic Cpr49Aa + chr2R_5_12375001 chr2R_12375001 RAL-91 335 chr2R 12481140 12481169 chr2R 12482940 12482973 roo 9 1797 4.0 3.5 3.8 1.9 1833 chr2R 12481140 exon Dh44-R2 + chr2R 12482056 intron Dh44-R2 + chr2R 12482973 intron Dh44-R2 + chr2R_9_12480001 chr2R_12480001 RAL-91 336 chr2R 12501708 12501720 chr2R 12503870 12503881 Rt1c 5 2161 7.5 7.5 7.5 0.6 2173 chr2R 12501708 intron fdl - chr2R 12502794 intron fdl - chr2R 12503881 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-91 337 chr2R 12674933 12674954 chr2R 12675073 12675107 11 151 3.5 2.5 3.0 2.8 174 chr2R 12674933 intron CG42708 - chr2R 12675020 intron CG42708 - chr2R 12675107 intron CG42708 - chr2R_11_12675001 chr2R_12675001 RAL-91 338 chr2R 12739136 12739150 chr2R 12739212 12739226 6 76 2.5 2.0 2.2 1.9 90 chr2R 12739136 intron CG42663 + chr2R 12739181 intron CG42663 + chr2R 12739226 intron CG42663 + chr2R_6_12735001 chr2R_12735001 RAL-91 339 chr2R 12789295 12789313 chr2R 12797658 12797670 roo 7 8361 1.0 1.5 1.2 3.2 8375 chr2R 12789295 intron,3` UTR sca +,CR45137 - chr2R 12793482 intron,intron sca +,CR45137 - chr2R 12797670 intron,3` UTR sca +,CR45137 - chr2R_7_12790001 chr2R_12790001 RAL-91 340 chr2R 12847129 12847151 chr2R 12848180 12848202 12 1051 30.0 31.0 30.5 0.4 1073 chr2R 12847129 exon antr - chr2R 12847666 exon antr - chr2R 12848202 exon,5` UTR CG30486 -,CR45468 + chr2R_12_12845001 chr2R_12845001 RAL-91 341 chr2R 12855504 12855533 chr2R 12855759 12855791 4 257 2.0 0.0 1.0 2.0 287 chr2R 12855504 intron CG17574 - chr2R 12855648 intron CG17574 - chr2R 12855791 intron CG17574 - chr2R_4_12855001 chr2R_12855001 RAL-91 342 chr2R 13089752 13089782 chr2R 13089862 13089892 7 109 1.0 2.0 1.5 2.8 140 chr2R 13089752 intergenic not near genes chr2R 13089822 intergenic not near genes chr2R 13089892 intergenic not near genes chr2R_7_13085001 chr2R_13085001 RAL-91 343 chr2R 13136847 13136864 chr2R 13141645 13141662 Doc 12 4798 3.5 5.5 4.5 2.2 4815 chr2R 13136847 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141662 intron Cap-G + chr2R_12_13135001 chr2R_13135001 RAL-91 344 chr2R 13356509 13356537 chr2R 13356594 13356622 10 85 3.5 2.0 2.8 2.6 113 chr2R 13356509 intergenic not near genes chr2R 13356566 intergenic not near genes chr2R 13356622 intergenic not near genes chr2R_10_13355001 chr2R_13355001 RAL-91 345 chr2R 13467648 13467675 chr2R 13467875 13467902 6 227 2.5 3.0 2.8 1.6 254 chr2R 13467648 intron arr - chr2R 13467775 intron arr - chr2R 13467902 intron arr - chr2R_6_13465001 chr2R_13465001 RAL-91 346 chr2R 13547088 13547108 chr2R 13547283 13547303 7 195 0.5 1.0 0.8 3.9 215 chr2R 13547088 intron CG6145 - chr2R 13547196 intron CG6145 - chr2R 13547303 intron CG6145 - chr2R_7_13545001 chr2R_13545001 RAL-91 347 chr2R 13580507 13580527 chr2R 13580855 13580877 jockey 6 350 1.5 6.0 3.8 1.2 370 chr2R 13580507 3` UTR CG6191 - chr2R 13580692 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580877 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_6_13580001 chr2R_13580001 RAL-91 348 chr2R 13648488 13648518 chr2R 13648672 13648704 6 186 2.0 2.0 2.0 2.0 216 chr2R 13648488 intron fas + chr2R 13648596 intron fas + chr2R 13648704 intron fas + chr2R_6_13645001 chr2R_13645001 RAL-91 349 chr2R 13692323 13692350 chr2R 13692407 13692434 10 84 1.5 1.0 1.2 4.5 111 chr2R 13692323 intron,intron fas +,CG6220 - chr2R 13692378 intron,intron fas +,CG6220 - chr2R 13692434 intron,intron fas +,CG6220 - chr2R_10_13690001 chr2R_13690001 RAL-91 350 chr2R 13694632 13694651 chr2R 13694709 13694726 4 76 2.5 0.5 1.5 1.6 94 chr2R 13694632 intron fas + chr2R 13694679 intron fas + chr2R 13694726 intron fas + chr2R_4_13690001 chr2R_13690001 RAL-91 351 chr2R 13721205 13721210 chr2R 13721288 13721293 4 82 8.0 1.0 4.5 0.7 88 chr2R 13721205 intron fas + chr2R 13721249 intron fas + chr2R 13721293 intron fas + chr2R_4_13720001 chr2R_13720001 RAL-91 352 chr2R 13768986 13769008 chr2R 13769081 13769104 8 98 4.0 4.0 4.0 1.6 118 chr2R 13768986 intergenic not near genes chr2R 13769045 intergenic not near genes chr2R 13769104 intergenic not near genes chr2R_8_13765001 chr2R_13765001 RAL-91 353 chr2R 13793149 13793160 chr2R 13793225 13793235 4 75 4.0 2.5 3.2 1.0 86 chr2R 13793149 intergenic not near genes chr2R 13793192 intergenic not near genes chr2R 13793235 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-91 354 chr2R 13905604 13905632 chr2R 13907586 13907614 Rt1a 6 1980 4.5 4.0 4.2 1.2 2010 chr2R 13905604 intron shot - chr2R 13906609 intron shot - chr2R 13907614 intron shot - chr2R_6_13905001 chr2R_13905001 RAL-91 355 chr2R 13963512 13963542 chr2R 13963600 13963630 4 88 0.0 1.0 0.5 2.7 118 chr2R 13963512 intron Cp1 + chr2R 13963571 intron Cp1 + chr2R 13963630 intron Cp1 + chr2R_4_13960001 chr2R_13960001 RAL-91 356 chr2R 14294827 14294856 chr2R 14294907 14294936 7 78 1.0 2.5 1.8 2.5 109 chr2R 14294827 intron Ih + chr2R 14294882 intron Ih + chr2R 14294936 intron Ih + chr2R_7_14290001 chr2R_14290001 RAL-91 357 chr2R 14365303 14365332 chr2R 14365383 14365412 10 79 3.5 4.0 3.8 2.1 109 chr2R 14365303 exon Tfb1 + chr2R 14365358 3` UTR Tfb1 + chr2R 14365412 3` UTR Tfb1 + chr2R_10_14365001 chr2R_14365001 RAL-91 358 chr2R 14393864 14393891 chr2R 14393949 14393956 6 82 2.5 2.0 2.2 1.9 92 chr2R 14393864 intergenic not near genes chr2R 14393910 intergenic not near genes chr2R 14393956 intergenic not near genes chr2R_6_14390001 chr2R_14390001 RAL-91 359 chr2R 14467311 14467327 chr2R 14476469 14476485 roo 4 9154 2.0 3.0 2.5 1.1 9174 chr2R 14467311 intergenic not near genes chr2R 14471898 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-91 360 chr2R 14497415 14497420 chr2R 14498563 14498582 1360 4 1160 0.0 0.5 0.2 3.3 1167 chr2R 14497415 3` UTR Cpsf160 - chr2R 14497998 intron Cpsf160 - chr2R 14498582 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-91 361 chr2R 14565558 14565572 chr2R 14565635 14565649 5 77 3.0 1.5 2.2 1.6 91 chr2R 14565558 intron ttv + chr2R 14565604 intron ttv + chr2R 14565649 intron ttv + chr2R_5_14565001 chr2R_14565001 RAL-91 362 chr2R 14855030 14855053 chr2R 14855122 14855145 6 91 5.0 1.0 3.0 1.5 115 chr2R 14855030 5` UTR Ciao1 - chr2R 14855088 intergenic Ciao1 -,HPS1 + chr2R 14855145 intergenic Ciao1 -,HPS1 + chr2R_6_14855001 chr2R_14855001 RAL-91 363 chr2R 14911700 14911726 chr2R 14911823 14911849 6 123 4.0 3.5 3.8 1.2 149 chr2R 14911700 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911849 intron CG10249 - chr2R_6_14910001 chr2R_14910001 RAL-91 364 chr2R 15051090 15051109 chr2R 15051172 15051191 9 82 1.5 2.0 1.8 3.2 101 chr2R 15051090 intergenic not near genes chr2R 15051140 intergenic not near genes chr2R 15051191 intergenic not near genes chr2R_9_15050001 chr2R_15050001 RAL-91 365 chr2R 15054738 15054746 chr2R 15054814 15054823 4 76 4.5 1.5 3.0 1.0 85 chr2R 15054738 intergenic not near genes chr2R 15054780 intergenic not near genes chr2R 15054823 intergenic not near genes chr2R_4_15050001 chr2R_15050001 RAL-91 366 chr2R 15084979 15085001 chr2R 15092028 15092050 297 6 7047 3.0 0.0 1.5 2.4 7071 chr2R 15084979 intergenic not near genes chr2R 15088514 intergenic not near genes chr2R 15092050 5` UTR CR44457 + chr2R_6_15085001 chr2R_15085001 RAL-91 367 chr2R 15133436 15133459 chr2R 15133553 15133572 6 116 4.5 3.0 3.8 1.2 136 chr2R 15133436 intron chn + chr2R 15133504 intron chn + chr2R 15133572 intron chn + chr2R_6_15130001 chr2R_15130001 RAL-91 368 chr2R 15137969 15138003 chr2R 15138049 15138085 9 79 4.0 0.0 2.0 3.0 116 chr2R 15137969 intron chn + chr2R 15138027 intron chn + chr2R 15138085 intron chn + chr2R_9_15135001 chr2R_15135001 RAL-91 369 chr2R 15152223 15152234 chr2R 15152346 15152355 4 124 5.0 0.5 2.8 1.1 132 chr2R 15152223 intergenic not near genes chr2R 15152289 intergenic not near genes chr2R 15152355 intergenic not near genes chr2R_4_15150001 chr2R_15150001 RAL-91 370 chr2R 15295716 15295742 chr2R 15295840 15295867 6 124 2.5 3.0 2.8 1.6 151 chr2R 15295716 intron Trpm - chr2R 15295792 intron Trpm - chr2R 15295867 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-91 371 chr2R 15547690 15547715 chr2R 15547763 15547795 15 79 1.5 2.5 2.0 5.0 105 chr2R 15547690 intron CG8192 - chr2R 15547742 intron CG8192 - chr2R 15547795 intron CG8192 - chr2R_15_15545001 chr2R_15545001 RAL-91 372 chr2R 15734129 15734139 chr2R 15734205 15734215 6 76 4.5 5.0 4.8 1.0 86 chr2R 15734129 intron CG30089 + chr2R 15734172 intron CG30089 + chr2R 15734215 intron CG30089 + chr2R_6_15730001 chr2R_15730001 RAL-91 373 chr2R 16054950 16054960 chr2R 16055033 16055041 5 80 8.5 11.5 10.0 0.5 91 chr2R 16054950 intron CG8405 + chr2R 16054996 intron CG8405 + chr2R 16055041 intron CG8405 + chr2R_5_16050001 chr2R_16050001 RAL-91 374 chr2R 16109387 16109423 chr2R 16109472 16109489 11 78 4.0 5.0 4.5 2.0 102 chr2R 16109387 exon Ric - chr2R 16109438 intron Ric - chr2R 16109489 intron Ric - chr2R_11_16105001 chr2R_16105001 RAL-91 375 chr2R 16245641 16245655 chr2R 16245729 16245743 4 88 2.0 1.0 1.5 1.6 102 chr2R 16245641 intron CngA - chr2R 16245692 intron CngA - chr2R 16245743 intron CngA - chr2R_4_16245001 chr2R_16245001 RAL-91 376 chr2R 16429253 16429272 chr2R 16429329 16429348 9 75 5.0 2.5 3.8 1.9 95 chr2R 16429253 intron Sema-2b + chr2R 16429300 intron Sema-2b + chr2R 16429348 intron Sema-2b + chr2R_9_16425001 chr2R_16425001 RAL-91 377 chr2R 16459402 16459428 chr2R 16459933 16459959 8 531 0.5 0.5 0.5 5.3 557 chr2R 16459402 intergenic not near genes chr2R 16459680 intergenic not near genes chr2R 16459959 intergenic not near genes chr2R_8_16455001 chr2R_16455001 RAL-91 378 chr2R 16489284 16489301 chr2R 16489367 16489385 4 84 1.0 5.0 3.0 1.0 101 chr2R 16489284 intergenic CG33459 + chr2R 16489334 intergenic CG33459 + chr2R 16489385 intergenic CG33459 + chr2R_4_16485001 chr2R_16485001 RAL-91 379 chr2R 16503879 16503901 chr2R 16503969 16503990 4 90 0.5 3.5 2.0 1.3 111 chr2R 16503879 intron Sema-2a + chr2R 16503934 intron Sema-2a + chr2R 16503990 intron Sema-2a + chr2R_4_16500001 chr2R_16500001 RAL-91 380 chr2R 16537914 16537931 chr2R 16537994 16538011 9 79 1.5 6.0 3.8 1.9 97 chr2R 16537914 intergenic not near genes chr2R 16537962 intergenic not near genes chr2R 16538011 intergenic not near genes chr2R_9_16535001 chr2R_16535001 RAL-91 381 chr2R 16539636 16539669 chr2R 16544845 16544878 copia 5 5209 1.0 0.5 0.8 2.8 5242 chr2R 16539636 intergenic not near genes chr2R 16542257 intergenic not near genes chr2R 16544878 intergenic not near genes chr2R_5_16540001 chr2R_16540001 RAL-91 382 chr2R 16547022 16547031 chr2R 16547102 16547111 4 80 0.0 0.0 0.0 4.0 89 chr2R 16547022 intergenic not near genes chr2R 16547066 intergenic not near genes chr2R 16547111 intergenic not near genes chr2R_4_16545001 chr2R_16545001 RAL-91 383 chr2R 16601520 16601546 chr2R 16601631 16601656 8 110 3.5 1.0 2.2 2.5 136 chr2R 16601520 intron CG8303 - chr2R 16601588 intron CG8303 - chr2R 16601656 intron CG8303 - chr2R_8_16600001 chr2R_16600001 RAL-91 384 chr2R 16617060 16617083 chr2R 16617139 16617162 9 77 4.0 3.5 3.8 1.9 102 chr2R 16617060 intron CG5065 + chr2R 16617111 intron CG5065 + chr2R 16617162 intron CG5065 + chr2R_9_16615001 chr2R_16615001 RAL-91 385 chr2R 16775655 16775675 chr2R 16775922 16775942 4 267 0.5 1.5 1.0 2.0 287 chr2R 16775655 3` UTR Arp53D + chr2R 16775798 intergenic Arp53D + chr2R 16775942 intergenic Arp53D + chr2R_4_16775001 chr2R_16775001 RAL-91 386 chr2R 17152717 17152739 chr2R 17152841 17152863 5 124 1.5 2.0 1.8 1.8 146 chr2R 17152717 intergenic not near genes chr2R 17152790 intergenic not near genes chr2R 17152863 intergenic not near genes chr2R_5_17150001 chr2R_17150001 RAL-91 387 chr2R 17161355 17161363 chr2R 17161562 17161570 4 207 4.0 0.0 2.0 1.3 215 chr2R 17161355 intergenic not near genes chr2R 17161462 intergenic not near genes chr2R 17161570 intergenic not near genes chr2R_4_17160001 chr2R_17160001 RAL-91 388 chr2R 17236509 17236537 chr2R 17241713 17241741 copia 8 5202 2.0 1.5 1.8 2.9 5232 chr2R 17236509 intron mbl + chr2R 17239125 intron mbl + chr2R 17241741 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-91 389 chr2R 17470336 17470352 chr2R 17470406 17470432 4 77 1.0 0.0 0.5 2.7 96 chr2R 17470336 intron qkr54B + chr2R 17470384 intron qkr54B + chr2R 17470432 intron qkr54B + chr2R_4_17470001 chr2R_17470001 RAL-91 390 chr2R 17627761 17627773 chr2R 17628088 17628100 7 327 4.0 2.0 3.0 1.8 339 chr2R 17627761 intron CG10936 - chr2R 17627930 intron CG10936 - chr2R 17628100 intron CG10936 - chr2R_7_17625001 chr2R_17625001 RAL-91 391 chr2R 17709981 17710089 chr2R 17710072 17710167 6 84 0.5 0.5 0.5 4.0 186 chr2R 17709981 intron CG6424 - chr2R 17710074 intron CG6424 - chr2R 17710167 intron CG6424 - chr2R_6_17710001 chr2R_17710001 RAL-91 392 chr2R 17784027 17784051 chr2R 17784267 17784292 pogo 7 240 1.5 5.5 3.5 1.6 265 chr2R 17784027 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784292 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-91 393 chr2R 17934411 17934443 chr2R 17934543 17934573 8 131 1.0 2.5 1.8 2.9 162 chr2R 17934411 intergenic not near genes chr2R 17934492 intergenic not near genes chr2R 17934573 intergenic not near genes chr2R_8_17930001 chr2R_17930001 RAL-91 394 chr2R 18035411 18035433 chr2R 18035487 18035508 6 75 3.0 0.5 1.8 2.1 97 chr2R 18035411 intergenic not near genes chr2R 18035460 intergenic not near genes chr2R 18035508 intergenic not near genes chr2R_6_18035001 chr2R_18035001 RAL-91 395 chr2R 18207316 18207352 chr2R 18207404 18207421 13 82 2.5 1.0 1.8 4.6 105 chr2R 18207316 intergenic CG30114 + chr2R 18207368 intergenic CG30114 + chr2R 18207421 intergenic CG30114 + chr2R_13_18205001 chr2R_18205001 RAL-91 396 chr2R 18308289 18308317 chr2R 18308394 18308423 9 106 3.5 2.0 2.8 2.4 134 chr2R 18308289 intron sbb - chr2R 18308356 intron sbb - chr2R 18308423 intron sbb - chr2R_9_18305001 chr2R_18305001 RAL-91 397 chr2R 18358403 18358422 chr2R 18372615 18372634 roo 6 14212 1.5 3.0 2.2 1.9 14231 chr2R 18358403 intergenic not near genes chr2R 18365518 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_6_18365001 chr2R_18365001 RAL-91 398 chr2R 18486847 18486879 chr2R 18487108 18487141 16 260 4.0 3.0 3.5 3.6 294 chr2R 18486847 intron CG30116 - chr2R 18486994 intron CG30116 - chr2R 18487141 intron CG30116 - chr2R_16_18485001 chr2R_18485001 RAL-91 399 chr2R 18526600 18526617 chr2R 18526679 18526696 6 81 3.5 3.0 3.2 1.4 96 chr2R 18526600 intergenic CG43066 + chr2R 18526648 intergenic CG43066 + chr2R 18526696 intergenic CG43066 + chr2R_6_18525001 chr2R_18525001 RAL-91 400 chr2R 18550581 18550610 chr2R 18550670 18550691 9 86 5.5 1.0 3.2 2.1 110 chr2R 18550581 intergenic not near genes chr2R 18550636 intergenic not near genes chr2R 18550691 intergenic not near genes chr2R_9_18550001 chr2R_18550001 RAL-91 401 chr2R 18575152 18575158 chr2R 18575369 18575375 4 217 0.0 3.0 1.5 1.6 223 chr2R 18575152 intron GEFmeso - chr2R 18575264 intron GEFmeso - chr2R 18575375 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-91 402 chr2R 18575795 18575830 chr2R 18581983 18582018 3S18 7 6187 2.0 4.0 3.0 1.8 6223 chr2R 18575795 intron GEFmeso - chr2R 18578906 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-91 403 chr2R 18590866 18590901 chr2R 18600018 18600053 roo 6 9152 2.0 2.5 2.2 1.9 9187 chr2R 18590866 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-91 404 chr2R 18678528 18678540 chr2R 18678648 18678660 4 119 1.5 1.5 1.5 1.6 132 chr2R 18678528 intergenic CG44434 -,CG44435 - chr2R 18678594 intergenic CG44434 -,CG44435 - chr2R 18678660 intergenic CG44434 -,CG44435 - chr2R_4_18675001 chr2R_18675001 RAL-91 405 chr2R 18713241 18713273 chr2R 18713318 18713350 9 76 4.0 2.5 3.2 2.1 109 chr2R 18713241 intergenic not near genes chr2R 18713296 intergenic not near genes chr2R 18713350 intergenic not near genes chr2R_9_18710001 chr2R_18710001 RAL-91 406 chr2R 18812074 18812111 chr2R 18812152 18812187 9 78 1.5 1.5 1.5 3.6 113 chr2R 18812074 intron CG15096 - chr2R 18812130 intron CG15096 - chr2R 18812187 intron CG15096 - chr2R_9_18810001 chr2R_18810001 RAL-91 407 chr2R 18871646 18871680 chr2R 18871731 18871765 9 82 2.5 1.5 2.0 3.0 119 chr2R 18871646 intergenic not near genes chr2R 18871706 intergenic not near genes chr2R 18871765 intergenic not near genes chr2R_9_18870001 chr2R_18870001 RAL-91 408 chr2R 18924218 18924225 chr2R 18924303 18924310 4 84 4.5 1.0 2.8 1.1 92 chr2R 18924218 intron sano + chr2R 18924264 intron sano + chr2R 18924310 intron sano + chr2R_4_18920001 chr2R_18920001 RAL-91 409 chr2R 19026958 19026985 chr2R 19027037 19027064 4 79 4.0 0.0 2.0 1.3 106 chr2R 19026958 intron 5-HT1B - chr2R 19027011 intron 5-HT1B - chr2R 19027064 intron 5-HT1B - chr2R_4_19025001 chr2R_19025001 RAL-91 410 chr2R 19063544 19063575 chr2R 19063627 19063658 10 80 4.0 1.5 2.8 2.6 114 chr2R 19063544 intergenic not near genes chr2R 19063601 intergenic not near genes chr2R 19063658 intergenic not near genes chr2R_10_19060001 chr2R_19060001 RAL-91 411 chr2R 19627860 19627870 chr2R 19627925 19627927 5 73 3.5 1.5 2.5 1.4 67 chr2R 19627860 intron sm - chr2R 19627894 intron sm - chr2R 19627927 intron sm - chr2R_5_19625001 chr2R_19625001 RAL-91 412 chr2R 19776595 19776627 chr2R 19779915 19779950 jockey 6 3319 3.0 1.5 2.2 1.9 3355 chr2R 19776595 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779950 intergenic not near genes chr2R_6_19775001 chr2R_19775001 RAL-91 413 chr2R 19807674 19807683 chr2R 19807756 19807765 4 82 2.5 1.5 2.0 1.3 91 chr2R 19807674 intergenic not near genes chr2R 19807720 intergenic not near genes chr2R 19807765 intergenic not near genes chr2R_4_19805001 chr2R_19805001 RAL-91 414 chr2R 19837775 19837801 chr2R 19837872 19837898 4 97 0.5 1.5 1.0 2.0 123 chr2R 19837775 intergenic not near genes chr2R 19837836 intergenic not near genes chr2R 19837898 intergenic not near genes chr2R_4_19835001 chr2R_19835001 RAL-91 415 chr2R 19957429 19957460 chr2R 19962631 19962662 copia 6 5202 1.0 0.5 0.8 3.3 5233 chr2R 19957429 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962662 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-91 416 chr2R 20110206 20110229 chr2R 20110284 20110306 6 77 3.0 1.5 2.2 1.9 100 chr2R 20110206 intergenic not near genes chr2R 20110256 intergenic not near genes chr2R 20110306 intergenic not near genes chr2R_6_20110001 chr2R_20110001 RAL-91 417 chr2R 20223957 20223976 chr2R 20224042 20224061 6 85 1.0 0.0 0.5 4.0 104 chr2R 20223957 intergenic not near genes chr2R 20224009 intergenic not near genes chr2R 20224061 intergenic not near genes chr2R_6_20220001 chr2R_20220001 RAL-91 418 chr2R 20326761 20326784 chr2R 20326838 20326861 6 75 3.5 0.5 2.0 2.0 100 chr2R 20326761 5` UTR MED8 - chr2R 20326811 intergenic MED8 -,CG8929 + chr2R 20326861 intergenic MED8 -,CG8929 + chr2R_6_20325001 chr2R_20325001 RAL-91 419 chr2R 20642484 20642490 chr2R 20642561 20642567 5 77 7.0 0.0 3.5 1.1 83 chr2R 20642484 3` UTR,3` UTR,3` UTR CG11110 +,CG33785 -,CG33786 - chr2R 20642526 3` UTR,3` UTR,3` UTR CG11110 +,CG33785 -,CG33786 - chr2R 20642567 3` UTR,3` UTR CG33785 -,CG33786 - chr2R_5_20640001 chr2R_20640001 RAL-91 420 chr2R 20739444 20739474 chr2R 20744212 20744234 F-element 5 4766 1.0 2.0 1.5 2.0 4790 chr2R 20739444 intron dpr + chr2R 20741839 intron dpr + chr2R 20744234 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-91 421 chr2R 20962909 20962938 chr2R 20963004 20963036 10 97 0.5 1.5 1.0 5.0 127 chr2R 20962909 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963036 intergenic not near genes chr2R_10_20960001 chr2R_20960001 RAL-91 422 chr2R 21040869 21040884 chr2R 21040939 21040959 5 74 2.0 1.5 1.8 1.8 90 chr2R 21040869 intergenic not near genes chr2R 21040914 intergenic not near genes chr2R 21040959 intergenic not near genes chr2R_5_21040001 chr2R_21040001 RAL-91 423 chr2R 21049551 21049559 chr2R 21049648 21049656 4 96 5.0 1.5 3.2 1.0 105 chr2R 21049551 intergenic shg - chr2R 21049604 intergenic shg - chr2R 21049656 3` UTR shg - chr2R_4_21045001 chr2R_21045001 RAL-91 424 chr2R 21421340 21421346 chr2R 21421418 21421425 4 78 4.5 4.5 4.5 0.7 85 chr2R 21421340 intron Sdc - chr2R 21421382 intron Sdc - chr2R 21421425 intron Sdc - chr2R_4_21420001 chr2R_21420001 RAL-91 425 chr2R 21457018 21457033 chr2R 21457110 21457125 7 92 1.5 2.5 2.0 2.3 107 chr2R 21457018 intron Sdc - chr2R 21457072 intron Sdc - chr2R 21457125 intron Sdc - chr2R_7_21455001 chr2R_21455001 RAL-91 426 chr2R 21508077 21508093 chr2R 21508158 21508171 7 80 2.5 5.0 3.8 1.5 94 chr2R 21508077 intron MESK2 + chr2R 21508124 intron MESK2 + chr2R 21508171 intron MESK2 + chr2R_7_21505001 chr2R_21505001 RAL-91 427 chr2R 21592848 21592858 chr2R 21592927 21592941 4 81 6.5 9.5 8.0 0.4 93 chr2R 21592848 intergenic not near genes chr2R 21592894 intergenic not near genes chr2R 21592941 intergenic not near genes chr2R_4_21590001 chr2R_21590001 RAL-91 428 chr2R 21598968 21599001 chr2R 21599128 21599160 18 159 2.5 2.0 2.2 5.6 192 chr2R 21598968 intergenic not near genes chr2R 21599064 intergenic not near genes chr2R 21599160 intergenic not near genes chr2R_18_21595001 chr2R_21595001 RAL-91 429 chr2R 21738280 21738311 chr2R 21747440 21747447 roo 10 9151 0.5 1.5 1.0 5.0 9167 chr2R 21738280 intergenic not near genes chr2R 21742864 intergenic not near genes chr2R 21747447 intergenic not near genes chr2R_10_21740001 chr2R_21740001 RAL-91 430 chr2R 21963197 21963207 chr2R 21963281 21963292 7 85 3.5 0.0 1.8 2.5 95 chr2R 21963197 intergenic not near genes chr2R 21963244 intergenic not near genes chr2R 21963292 intergenic not near genes chr2R_7_21960001 chr2R_21960001 RAL-91 431 chr2R 22033829 22033858 chr2R 22033915 22033934 6 84 1.0 2.5 1.8 2.1 105 chr2R 22033829 intron CG34370 - chr2R 22033882 intron CG34370 - chr2R 22033934 intron CG34370 - chr2R_6_22030001 chr2R_22030001 RAL-91 432 chr2R 22035567 22035575 chr2R 22035654 22035662 5 87 1.5 4.5 3.0 1.2 95 chr2R 22035567 intron,3` UTR CG34370 -,CG9308 + chr2R 22035614 intron,3` UTR CG34370 -,CG9308 + chr2R 22035662 intron,3` UTR CG34370 -,CG9308 + chr2R_5_22035001 chr2R_22035001 RAL-91 433 chr2R 22040162 22040188 chr2R 22040243 22040257 6 79 3.0 3.5 3.2 1.4 95 chr2R 22040162 intergenic not near genes chr2R 22040210 intergenic not near genes chr2R 22040257 intergenic not near genes chr2R_6_22040001 chr2R_22040001 RAL-91 434 chr2R 22179223 22179235 chr2R 22179305 22179317 4 82 0.0 0.0 0.0 4.0 94 chr2R 22179223 intron CG11170 - chr2R 22179270 intron CG11170 - chr2R 22179317 intron CG11170 - chr2R_4_22175001 chr2R_22175001 RAL-91 435 chr2R 22189467 22189475 chr2R 22189584 22189602 5 124 3.0 4.0 3.5 1.1 135 chr2R 22189467 3` UTR Vps35 + chr2R 22189534 3` UTR Vps35 + chr2R 22189602 3` UTR Vps35 + chr2R_5_22185001 chr2R_22185001 RAL-91 436 chr2R 22360380 22360397 chr2R 22360813 22360830 jockey 7 433 3.0 1.0 2.0 2.3 450 chr2R 22360380 intron Liprin-gamma - chr2R 22360605 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_7_22360001 chr2R_22360001 RAL-91 437 chr2R 6717968 6717970 chr2R 22774295 22774297 4 16056327 7.5 9.5 8.5 0.4 16056329 chr2R 6717968 intergenic Zip42C.2 -,Zip42C.1 - chr2R 14746132 exon Dro + chr2R 22774297 intron CG42260 - chr2R_4_14745001 chr2R_14745001 RAL-91 438 chr2R 22774959 22774993 chr2R 22775378 22775412 jockey 5 418 1.0 2.0 1.5 2.0 453 chr2R 22774959 intron CG42260 - chr2R 22775186 intron CG42260 - chr2R 22775412 intron CG42260 - chr2R_5_22775001 chr2R_22775001 RAL-91 439 chr2R 22905036 22905061 chr2R 22905171 22905196 7 135 3.0 0.0 1.5 2.8 160 chr2R 22905036 intron nahoda + chr2R 22905116 intron nahoda + chr2R 22905196 intron nahoda + chr2R_7_22905001 chr2R_22905001 RAL-91 440 chr2R 22971498 22971522 chr2R 22971577 22971600 6 78 3.5 1.5 2.5 1.7 102 chr2R 22971498 intergenic not near genes chr2R 22971549 intergenic not near genes chr2R 22971600 intergenic not near genes chr2R_6_22970001 chr2R_22970001 RAL-91 441 chr2R 23155721 23155729 chr2R 23155808 23155815 6 87 3.0 2.0 2.5 1.7 94 chr2R 23155721 intron CG9899 + chr2R 23155768 intron CG9899 + chr2R 23155815 intron CG9899 + chr2R_6_23155001 chr2R_23155001 RAL-91 442 chr2R 23175037 23175065 chr2R 23175114 23175140 10 76 5.0 4.0 4.5 1.8 103 chr2R 23175037 intron CG34371 - chr2R 23175088 intron CG34371 - chr2R 23175140 intron CG34371 - chr2R_10_23175001 chr2R_23175001 RAL-91 443 chr2R 23194312 23194354 chr2R 23194433 23194465 4 113 0.0 1.0 0.5 2.7 153 chr2R 23194312 intron CG34371 - chr2R 23194388 intron CG34371 - chr2R 23194465 intron CG34371 - chr2R_4_23190001 chr2R_23190001 RAL-91 444 chr2R 23339509 23339522 chr2R 23339589 23339602 6 80 0.5 2.0 1.2 2.7 93 chr2R 23339509 intergenic not near genes chr2R 23339556 intergenic not near genes chr2R 23339602 intergenic not near genes chr2R_6_23335001 chr2R_23335001 RAL-91 445 chr2R 23437213 23437221 chr2R 23437316 23437321 5 102 4.0 5.5 4.8 0.9 108 chr2R 23437213 intergenic not near genes chr2R 23437267 intergenic not near genes chr2R 23437321 intergenic not near genes chr2R_5_23435001 chr2R_23435001 RAL-91 446 chr2R 23470278 23470310 chr2R 23470357 23470391 13 79 2.5 2.5 2.5 3.7 113 chr2R 23470278 intron,3` UTR CG43795 +,Or59b - chr2R 23470334 intron,3` UTR CG43795 +,Or59b - chr2R 23470391 intron,3` UTR CG43795 +,Or59b - chr2R_13_23470001 chr2R_23470001 RAL-91 447 chr2R 23529576 23529602 chr2R 23537152 23537178 412 9 7575 4.0 5.5 4.8 1.6 7602 chr2R 23529576 intron bw - chr2R 23533377 intron bw - chr2R 23537178 exon bw - chr2R_9_23530001 chr2R_23530001 RAL-91 448 chr2R 23570407 23570430 chr2R 23570483 23570507 7 76 4.5 2.0 3.2 1.7 100 chr2R 23570407 intron apt + chr2R 23570457 intron apt + chr2R 23570507 intron apt + chr2R_7_23570001 chr2R_23570001 RAL-91 449 chr2R 23653972 23654003 chr2R 23654049 23654080 15 77 4.5 2.5 3.5 3.3 108 chr2R 23653972 3` UTR retn + chr2R 23654026 3` UTR retn + chr2R 23654080 3` UTR retn + chr2R_15_23650001 chr2R_23650001 RAL-91 450 chr2R 23718285 23718316 chr2R 23718427 23718459 8 148 28.0 34.0 31.0 0.2 174 chr2R 23718285 intron Sesn + chr2R 23718372 intron Sesn + chr2R 23718459 intron Sesn + chr2R_8_23715001 chr2R_23715001 RAL-91 451 chr2R 23802293 23802300 chr2R 23802392 23802402 4 100 5.0 6.5 5.8 0.6 109 chr2R 23802293 3` UTR CG30177 + chr2R 23802348 3` UTR CG30177 + chr2R 23802402 3` UTR CG30177 + chr2R_4_23800001 chr2R_23800001 RAL-91 452 chr2R 23914300 23914331 chr2R 23921922 23921955 412 15 7620 3.5 4.5 4.0 3.0 7655 chr2R 23914300 exon kcc + chr2R 23918128 intron kcc + chr2R 23921955 intron kcc + chr2R_15_23915001 chr2R_23915001 RAL-91 453 chr2R 23986514 23986547 chr2R 23986593 23986627 11 80 1.5 3.0 2.2 3.4 113 chr2R 23986514 intron Phm - chr2R 23986570 intron Phm - chr2R 23986627 intron,5` UTR Phm -,CG30178 + chr2R_11_23985001 chr2R_23985001 RAL-91 454 chr2R 24031382 24031413 chr2R 24031466 24031496 12 84 3.0 2.0 2.5 3.4 114 chr2R 24031382 5` UTR CG30172 - chr2R 24031439 intergenic CG30172 -,Chi - chr2R 24031496 intergenic Chi -,CG30172 - chr2R_12_24030001 chr2R_24030001 RAL-91 455 chr2R 24218557 24218582 chr2R 24218640 24218665 6 80 4.0 2.5 3.2 1.4 108 chr2R 24218557 intron CG30419 - chr2R 24218611 intron CG30419 - chr2R 24218665 intron CG30419 - chr2R_6_24215001 chr2R_24215001 RAL-91 456 chr2R 24292837 24292854 chr2R 24292913 24292931 9 77 6.5 2.0 4.2 1.7 94 chr2R 24292837 intergenic not near genes chr2R 24292884 intergenic not near genes chr2R 24292931 intergenic not near genes chr2R_9_24290001 chr2R_24290001 RAL-91 457 chr2R 24320711 24320741 chr2R 24320916 24320952 7 209 3.0 2.0 2.5 2.0 241 chr2R 24320711 intergenic not near genes chr2R 24320832 intergenic not near genes chr2R 24320952 intergenic not near genes chr2R_7_24320001 chr2R_24320001 RAL-91 458 chr2R 24353428 24353459 chr2R 24361788 24361821 roo 11 8361 0.5 3.5 2.0 3.7 8393 chr2R 24353428 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361821 intron,intron bs +,CR44811 - chr2R_11_24355001 chr2R_24355001 RAL-91 459 chr2R 24490262 24490288 chr2R 24490338 24490362 9 75 3.0 2.0 2.5 2.6 100 chr2R 24490262 3` UTR CG13579 + chr2R 24490312 3` UTR CG13579 + chr2R 24490362 3` UTR CG13579 + chr2R_9_24490001 chr2R_24490001 RAL-91 460 chr2R 24509305 24509335 chr2R 24509390 24509418 9 81 1.5 3.0 2.2 2.8 113 chr2R 24509305 intergenic Letm1 - chr2R 24509362 intergenic Letm1 - chr2R 24509418 intergenic Letm1 - chr2R_9_24505001 chr2R_24505001 RAL-91 461 chr2R 24542326 24542356 chr2R 24542580 24542610 9 252 1.0 0.5 0.8 5.0 284 chr2R 24542326 intron,intron CG4622 -,ITP + chr2R 24542468 intron,intron CG4622 -,ITP + chr2R 24542610 intron,intron CG4622 -,ITP + chr2R_9_24540001 chr2R_24540001 RAL-91 462 chr2R 24590096 24590144 chr2R 24590204 24590236 4 104 0.0 3.5 1.8 1.4 140 chr2R 24590096 intron pio + chr2R 24590166 intron pio + chr2R 24590236 intron pio + chr2R_4_24590001 chr2R_24590001 RAL-91 463 chr2R 24592955 24592978 chr2R 24593048 24593070 12 92 6.5 4.0 5.2 1.9 115 chr2R 24592955 intron pio + chr2R 24593012 intron pio + chr2R 24593070 intron pio + chr2R_12_24590001 chr2R_24590001 RAL-91 464 chr2R 24636909 24636920 chr2R 24636995 24637005 5 85 2.0 0.5 1.2 2.3 96 chr2R 24636909 intron CG13594 - chr2R 24636957 intron CG13594 - chr2R 24637005 intron CG13594 - chr2R_5_24635001 chr2R_24635001 RAL-91 465 chr2R 24647606 24647615 chr2R 24655163 24655171 412 5 7557 0.0 5.0 2.5 1.4 7565 chr2R 24647606 intergenic not near genes chr2R 24651388 intergenic not near genes chr2R 24655171 intergenic not near genes chr2R_5_24650001 chr2R_24650001 RAL-91 466 chr2R 24727884 24727917 chr2R 24735392 24735425 mdg1 15 7507 1.5 6.0 3.8 3.1 7541 chr2R 24727884 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_15_24730001 chr2R_24730001 RAL-91 467 chr2R 24763611 24763644 chr2R 24765587 24765620 G2 15 1975 5.5 5.0 5.2 2.4 2009 chr2R 24763611 exon CG3894 + chr2R 24764616 intron CG3894 + chr2R 24765620 exon CG3894 + chr2R_15_24760001 chr2R_24760001 RAL-91 468 chr2R 24767994 24768023 chr2R 24768080 24768107 7 85 2.5 3.0 2.8 1.8 113 chr2R 24767994 5` UTR GstE12 - chr2R 24768050 5` UTR GstE12 - chr2R 24768107 5` UTR GstE12 - chr2R_7_24765001 chr2R_24765001 RAL-91 469 chr2R 24848654 24848686 chr2R 24848738 24848770 12 84 2.0 2.5 2.2 3.8 116 chr2R 24848654 intergenic CG3650 + chr2R 24848712 intergenic CG3650 + chr2R 24848770 intergenic CG3650 + chr2R_12_24845001 chr2R_24845001 RAL-91 470 chr2R 25101279 25101300 chr2R 25101381 25101401 8 102 1.0 3.5 2.2 2.5 122 chr2R 25101279 intron lov - chr2R 25101340 intron lov - chr2R 25101401 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-91 471 chr2R 25102531 25102552 chr2R 25102699 25102721 7 169 3.0 2.0 2.5 2.0 190 chr2R 25102531 intron lov - chr2R 25102626 intron lov - chr2R 25102721 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-91 472 chr2R 25131013 25131044 chr2R 25131089 25131121 4 77 1.0 0.0 0.5 2.7 108 chr2R 25131013 intron lov - chr2R 25131067 intron lov - chr2R 25131121 intron lov - chr2R_4_25130001 chr2R_25130001 RAL-91 473 chr3L 68982 69005 chr3L 69068 69092 5 86 1.0 1.0 1.0 2.5 110 chr3L 68982 3` UTR Lsp1gamma + chr3L 69037 intergenic Lsp1gamma +,CR44510 + chr3L 69092 intergenic CR44510 +,Lsp1gamma + chr3L_5_65001 chr3L_65001 RAL-91 474 chr3L 88759 88780 chr3L 90679 90700 6 1920 0.5 0.5 0.5 4.0 1941 chr3L 88759 intergenic not near genes chr3L 89730 intergenic not near genes chr3L 90700 intergenic not near genes chr3L_6_85001 chr3L_85001 RAL-91 475 chr3L 110232 110245 chr3L 119399 119411 roo 4 9166 0.5 3.0 1.8 1.4 9179 chr3L 110232 intergenic not near genes chr3L 114822 intergenic not near genes chr3L 119411 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-91 476 chr3L 365526 365549 chr3L 365612 365635 6 86 1.0 0.5 0.8 3.3 109 chr3L 365526 3` UTR CG1233 + chr3L 365580 3` UTR CG1233 + chr3L 365635 3` UTR CG1233 + chr3L_6_365001 chr3L_365001 RAL-91 477 chr3L 390962 390986 chr3L 391064 391091 7 105 2.5 3.5 3.0 1.8 129 chr3L 390962 intron trh - chr3L 391026 intron trh - chr3L 391091 intron trh - chr3L_7_390001 chr3L_390001 RAL-91 478 chr3L 402690 402718 chr3L 409743 409771 297 9 7053 6.0 4.0 5.0 1.5 7081 chr3L 402690 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-91 479 chr3L 514285 514306 chr3L 514362 514383 8 77 1.0 2.0 1.5 3.2 98 chr3L 514285 intron klar - chr3L 514334 intron klar - chr3L 514383 intron klar - chr3L_8_510001 chr3L_510001 RAL-91 480 chr3L 535044 535079 chr3L 535126 535161 10 81 2.5 3.5 3.0 2.5 117 chr3L 535044 intron klar - chr3L 535102 intron klar - chr3L 535161 intron klar - chr3L_10_535001 chr3L_535001 RAL-91 481 chr3L 857999 858032 chr3L 866480 866490 Tirant 13 8477 2.0 2.5 2.2 4.1 8491 chr3L 857999 intergenic not near genes chr3L 862244 intergenic not near genes chr3L 866490 intergenic CG12502 + chr3L_13_860001 chr3L_860001 RAL-91 482 chr3L 875675 875691 chr3L 875762 875777 6 86 4.0 11.0 7.5 0.7 102 chr3L 875675 intron CG32479 + chr3L 875726 intron CG32479 + chr3L 875777 intron CG32479 + chr3L_6_875001 chr3L_875001 RAL-91 483 chr3L 922170 922184 chr3L 922247 922249 5 75 2.5 2.5 2.5 1.4 79 chr3L 922170 intron Glut1 + chr3L 922210 intron Glut1 + chr3L 922249 intron Glut1 + chr3L_5_920001 chr3L_920001 RAL-91 484 chr3L 925174 925206 chr3L 932600 932632 mdg1 5 7426 3.0 0.0 1.5 2.0 7458 chr3L 925174 intron Glut1 + chr3L 928903 intron Glut1 + chr3L 932632 intron Glut1 + chr3L_5_925001 chr3L_925001 RAL-91 485 chr3L 939772 939801 chr3L 940892 940922 jockey 12 1121 3.5 3.0 3.2 2.9 1150 chr3L 939772 intron Glut1 + chr3L 940347 intron Glut1 + chr3L 940922 intron Glut1 + chr3L_12_940001 chr3L_940001 RAL-91 486 chr3L 971949 971965 chr3L 972037 972065 4 97 1.0 0.5 0.8 2.2 116 chr3L 971949 intron Glut1 + chr3L 972007 intron Glut1 + chr3L 972065 intron Glut1 + chr3L_4_970001 chr3L_970001 RAL-91 487 chr3L 1021375 1021405 chr3L 1021455 1021471 16 77 2.5 6.0 4.2 3.1 96 chr3L 1021375 intron trio - chr3L 1021423 intron trio - chr3L 1021471 intron trio - chr3L_16_1020001 chr3L_1020001 RAL-91 488 chr3L 1031581 1031614 chr3L 1031657 1031686 8 66 8.5 6.5 7.5 0.9 105 chr3L 1031581 intron trio - chr3L 1031634 intron trio - chr3L 1031686 intron trio - chr3L_8_1030001 chr3L_1030001 RAL-91 489 chr3L 1109646 1109667 chr3L 1109720 1109745 8 82 2.0 0.5 1.2 3.6 99 chr3L 1109646 intergenic not near genes chr3L 1109696 intergenic not near genes chr3L 1109745 intergenic not near genes chr3L_8_1105001 chr3L_1105001 RAL-91 490 chr3L 1154135 1154161 chr3L 1163285 1163311 roo 7 9150 2.0 3.0 2.5 2.0 9176 chr3L 1154135 intron bab2 - chr3L 1158723 intron bab2 - chr3L 1163311 intron bab2 - chr3L_7_1155001 chr3L_1155001 RAL-91 491 chr3L 1189632 1189657 chr3L 1189716 1189743 9 86 2.0 3.0 2.5 2.6 111 chr3L 1189632 5` UTR CG13912 + chr3L 1189688 5` UTR CG13912 + chr3L 1189743 5` UTR CG13912 + chr3L_9_1185001 chr3L_1185001 RAL-91 492 chr3L 1219599 1219621 chr3L 1227332 1227354 412 9 7732 3.0 4.5 3.8 1.9 7755 chr3L 1219599 intron mwh + chr3L 1223476 intron mwh + chr3L 1227354 intron mwh + chr3L_9_1220001 chr3L_1220001 RAL-91 493 chr3L 1257637 1257656 chr3L 1257717 1257736 4 80 0.0 0.5 0.2 3.3 99 chr3L 1257637 intron CG9134 + chr3L 1257686 intron CG9134 + chr3L 1257736 intron CG9134 + chr3L_4_1255001 chr3L_1255001 RAL-91 494 chr3L 1361291 1361322 chr3L 1361366 1361396 5 71 4.0 2.0 3.0 1.2 105 chr3L 1361291 intron Ptp61F - chr3L 1361344 intron Ptp61F - chr3L 1361396 intron Ptp61F - chr3L_5_1360001 chr3L_1360001 RAL-91 495 chr3L 1396738 1396745 chr3L 1396822 1396829 4 84 5.5 1.0 3.2 1.0 91 chr3L 1396738 intron Ptp61F - chr3L 1396784 intron Ptp61F - chr3L 1396829 intron Ptp61F - chr3L_4_1395001 chr3L_1395001 RAL-91 496 chr3L 1415775 1415807 chr3L 1415855 1415874 7 80 1.0 2.5 1.8 2.5 99 chr3L 1415775 intron Ptp61F - chr3L 1415824 intron Ptp61F - chr3L 1415874 intron Ptp61F - chr3L_7_1415001 chr3L_1415001 RAL-91 497 chr3L 1501996 1502020 chr3L 1502076 1502101 8 80 2.0 3.5 2.8 2.1 105 chr3L 1501996 intron pUf68 - chr3L 1502048 intron pUf68 - chr3L 1502101 intron pUf68 - chr3L_8_1500001 chr3L_1500001 RAL-91 498 chr3L 1505998 1506025 chr3L 1513595 1513622 17.6 8 7597 6.5 3.5 5.0 1.3 7624 chr3L 1505998 intron,intron Psa +,cue - chr3L 1509810 intron,intron Psa +,cue - chr3L 1513622 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 RAL-91 499 chr3L 1639216 1639239 chr3L 1639395 1639420 4 180 2.0 1.0 1.5 1.6 204 chr3L 1639216 5` UTR metl - chr3L 1639318 intergenic metl -,Bgb + chr3L 1639420 intergenic metl -,Bgb + chr3L_4_1635001 chr3L_1635001 RAL-91 500 chr3L 1674338 1674359 chr3L 1674418 1674442 5 82 2.5 4.0 3.2 1.2 104 chr3L 1674338 intergenic CG7991 + chr3L 1674390 intergenic CG7991 + chr3L 1674442 intergenic CG7991 + chr3L_5_1670001 chr3L_1670001 RAL-91 501 chr3L 1728522 1728546 chr3L 1728607 1728631 7 84 2.0 2.0 2.0 2.3 109 chr3L 1728522 intron drpr - chr3L 1728576 intron drpr - chr3L 1728631 intron drpr - chr3L_7_1725001 chr3L_1725001 RAL-91 502 chr3L 1846656 1846681 chr3L 1846760 1846780 7 103 1.5 1.5 1.5 2.8 124 chr3L 1846656 intergenic not near genes chr3L 1846718 intergenic not near genes chr3L 1846780 intergenic not near genes chr3L_7_1845001 chr3L_1845001 RAL-91 503 chr3L 1922459 1922465 chr3L 1922532 1922543 4 76 7.5 7.5 7.5 0.5 84 chr3L 1922459 intron Dbx + chr3L 1922501 intron Dbx + chr3L 1922543 intron Dbx + chr3L_4_1920001 chr3L_1920001 RAL-91 504 chr3L 2139207 2139228 chr3L 2139288 2139309 5 80 1.0 3.5 2.2 1.6 102 chr3L 2139207 intron zormin - chr3L 2139258 intron zormin - chr3L 2139309 intron zormin - chr3L_5_2135001 chr3L_2135001 RAL-91 505 chr3L 2143905 2143924 chr3L 2143985 2144004 8 80 1.0 0.0 0.5 5.3 99 chr3L 2143905 intron zormin - chr3L 2143954 intron zormin - chr3L 2144004 intron zormin - chr3L_8_2140001 chr3L_2140001 RAL-91 506 chr3L 2168778 2168808 chr3L 2168869 2168899 8 91 0.5 1.5 1.0 4.0 121 chr3L 2168778 exon CG15879 - chr3L 2168838 intron CG15879 - chr3L 2168899 intron CG15879 - chr3L_8_2165001 chr3L_2165001 RAL-91 507 chr3L 2308010 2308029 chr3L 2308116 2308135 5 106 0.5 1.0 0.8 2.8 125 chr3L 2308010 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308135 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-91 508 chr3L 2320390 2320412 chr3L 2320474 2320497 4 84 1.0 0.5 0.8 2.2 107 chr3L 2320390 intergenic CR45426 - chr3L 2320444 intergenic not near genes chr3L 2320497 intergenic not near genes chr3L_4_2320001 chr3L_2320001 RAL-91 509 chr3L 2411335 2411344 chr3L 2411415 2411424 4 80 1.0 4.0 2.5 1.1 89 chr3L 2411335 intron CG45186 + chr3L 2411380 intron CG45186 + chr3L 2411424 intron CG45186 + chr3L_4_2410001 chr3L_2410001 RAL-91 510 chr3L 2447509 2447536 chr3L 2456665 2456692 roo 8 9151 3.5 4.5 4.0 1.6 9183 chr3L 2447509 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_8_2450001 chr3L_2450001 RAL-91 511 chr3L 2480301 2480330 chr3L 2480401 2480430 10 99 2.0 2.0 2.0 3.3 129 chr3L 2480301 intron CG45186 + chr3L 2480366 intron CG45186 + chr3L 2480430 intron CG45186 + chr3L_10_2480001 chr3L_2480001 RAL-91 512 chr3L 2561531 2561561 chr3L 2561608 2561638 6 77 0.5 0.5 0.5 4.0 107 chr3L 2561531 intron msn - chr3L 2561584 intron msn - chr3L 2561638 intron msn - chr3L_6_2560001 chr3L_2560001 RAL-91 513 chr3L 2568189 2568216 chr3L 2568270 2568297 5 81 2.5 2.5 2.5 1.4 108 chr3L 2568189 intron msn - chr3L 2568243 intron msn - chr3L 2568297 intron msn - chr3L_5_2565001 chr3L_2565001 RAL-91 514 chr3L 2665749 2665759 chr3L 2665836 2665847 8 87 4.5 4.0 4.2 1.5 98 chr3L 2665749 intron Fife - chr3L 2665798 intron Fife - chr3L 2665847 intron Fife - chr3L_8_2665001 chr3L_2665001 RAL-91 515 chr3L 2683944 2683979 chr3L 2684020 2684055 7 76 1.5 2.0 1.8 2.5 111 chr3L 2683944 intron Fife - chr3L 2684000 intron Fife - chr3L 2684055 intron Fife - chr3L_7_2680001 chr3L_2680001 RAL-91 516 chr3L 2911781 2911807 chr3L 2911875 2911899 6 93 0.5 3.0 1.8 2.1 118 chr3L 2911781 intron Shab + chr3L 2911840 intron Shab + chr3L 2911899 intron Shab + chr3L_6_2910001 chr3L_2910001 RAL-91 517 chr3L 2927839 2927871 chr3L 2936116 2936148 Tirant 4 8272 2.0 0.5 1.2 1.8 8309 chr3L 2927839 intron Shab + chr3L 2931994 intron Shab + chr3L 2936148 intron Shab + chr3L_4_2930001 chr3L_2930001 RAL-91 518 chr3L 3034655 3034685 chr3L 3034735 3034765 7 80 2.0 1.5 1.8 2.5 110 chr3L 3034655 intergenic not near genes chr3L 3034710 intergenic CG2162 + chr3L 3034765 intergenic CG2162 + chr3L_7_3030001 chr3L_3030001 RAL-91 519 chr3L 3050900 3050928 chr3L 3050987 3051015 11 85 4.0 1.5 2.8 2.9 115 chr3L 3050900 intron CG32485 + chr3L 3050958 intron CG32485 + chr3L 3051015 exon CG32485 + chr3L_11_3050001 chr3L_3050001 RAL-91 520 chr3L 3057253 3057278 chr3L 3057397 3057421 13 143 3.5 2.0 2.8 3.4 168 chr3L 3057253 exon CG32486 - chr3L 3057337 intron CG32486 - chr3L 3057421 intron CG32486 - chr3L_13_3055001 chr3L_3055001 RAL-91 521 chr3L 3061282 3061315 chr3L 3069865 3069895 Tirant 6 8582 3.5 5.5 4.5 1.1 8613 chr3L 3061282 intron CG32486 - chr3L 3065588 intron CG32486 - chr3L 3069895 intron CG32486 - chr3L_6_3065001 chr3L_3065001 RAL-91 522 chr3L 3281446 3281474 chr3L 3281942 3281970 Doc 10 496 0.5 6.0 3.2 2.4 524 chr3L 3281446 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281970 intron CG12017 + chr3L_10_3280001 chr3L_3280001 RAL-91 523 chr3L 3475085 3475106 chr3L 3475529 3475550 jockey 5 444 1.5 2.5 2.0 1.7 465 chr3L 3475085 intron CG42324 + chr3L 3475318 intron CG42324 + chr3L 3475550 intron CG42324 + chr3L_5_3475001 chr3L_3475001 RAL-91 524 chr3L 3613013 3613035 chr3L 3613542 3613566 5 531 11.5 6.5 9.0 0.5 553 chr3L 3613013 intron CG10359 + chr3L 3613290 intron CG10359 + chr3L 3613566 intron CG10359 + chr3L_5_3610001 chr3L_3610001 RAL-91 525 chr3L 3640064 3640086 chr3L 3640141 3640163 6 75 2.0 2.0 2.0 2.0 99 chr3L 3640064 intron dar1 + chr3L 3640114 intron dar1 + chr3L 3640163 intron dar1 + chr3L_6_3640001 chr3L_3640001 RAL-91 526 chr3L 3798054 3798069 chr3L 3798131 3798147 6 78 1.5 3.0 2.2 1.9 93 chr3L 3798054 intron CG32264 - chr3L 3798100 intron CG32264 - chr3L 3798147 intron CG32264 - chr3L_6_3795001 chr3L_3795001 RAL-91 527 chr3L 3815056 3815083 chr3L 3815137 3815164 5 80 2.0 1.5 1.8 1.8 108 chr3L 3815056 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815110 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815164 intron,intron Scsalpha +,CR43932 - chr3L_5_3815001 chr3L_3815001 RAL-91 528 chr3L 3833737 3833764 chr3L 3833978 3834005 pogo 6 241 2.5 0.0 1.2 2.7 268 chr3L 3833737 intron enc + chr3L 3833871 intron enc + chr3L 3834005 intron enc + chr3L_6_3830001 chr3L_3830001 RAL-91 529 chr3L 3890976 3890993 chr3L 3891049 3891074 4 79 4.0 0.0 2.0 1.3 98 chr3L 3890976 intergenic not near genes chr3L 3891025 intergenic not near genes chr3L 3891074 intergenic not near genes chr3L_4_3890001 chr3L_3890001 RAL-91 530 chr3L 4088131 4088167 chr3L 4088215 4088251 8 81 2.0 3.5 2.8 2.1 120 chr3L 4088131 intron,intron Gad1 -,CG14989 + chr3L 4088191 intron,intron Gad1 -,CG14989 + chr3L 4088251 5` UTR,intron Gad1 -,CG14989 + chr3L_8_4085001 chr3L_4085001 RAL-91 531 chr3L 4092477 4092496 chr3L 4095761 4095787 7 3286 10.5 31.5 21.0 0.3 3310 chr3L 4092477 3` UTR CG14989 + chr3L 4094132 exon CG14990 + chr3L 4095787 exon CG14995 - chr3L_7_4090001 chr3L_4090001 RAL-91 532 chr3L 4209833 4209854 chr3L 4209911 4209932 5 78 2.5 2.5 2.5 1.4 99 chr3L 4209833 intron CG43367 + chr3L 4209882 intron CG43367 + chr3L 4209932 intron CG43367 + chr3L_5_4205001 chr3L_4205001 RAL-91 533 chr3L 4229745 4229756 chr3L 4229824 4229849 5 86 4.5 2.0 3.2 1.2 104 chr3L 4229745 intron ImpL2 - chr3L 4229797 intron ImpL2 - chr3L 4229849 intron ImpL2 - chr3L_5_4225001 chr3L_4225001 RAL-91 534 chr3L 4416151 4416156 chr3L 4416462 4416464 4 310 6.0 4.0 5.0 0.7 313 chr3L 4416151 intron DOR + chr3L 4416308 intron DOR + chr3L 4416464 intron DOR + chr3L_4_4415001 chr3L_4415001 RAL-91 535 chr3L 4416158 4416173 chr3L 4416459 4416484 7 309 3.5 3.5 3.5 1.6 326 chr3L 4416158 intron DOR + chr3L 4416321 intron DOR + chr3L 4416484 intron DOR + chr3L_7_4415001 chr3L_4415001 RAL-91 536 chr3L 4441833 4441869 chr3L 4441912 4441936 7 77 1.5 4.5 3.0 1.8 103 chr3L 4441833 intergenic not near genes chr3L 4441884 intergenic not near genes chr3L 4441936 intergenic not near genes chr3L_7_4440001 chr3L_4440001 RAL-91 537 chr3L 4706459 4706482 chr3L 4706649 4706672 6 190 1.5 1.5 1.5 2.4 213 chr3L 4706459 intron RhoGEF64C + chr3L 4706566 intron RhoGEF64C + chr3L 4706672 intron RhoGEF64C + chr3L_6_4705001 chr3L_4705001 RAL-91 538 chr3L 4839601 4839621 chr3L 4839681 4839702 9 80 1.0 1.0 1.0 4.5 101 chr3L 4839601 intron CG13707 - chr3L 4839652 intron CG13707 - chr3L 4839702 intron CG13707 - chr3L_9_4835001 chr3L_4835001 RAL-91 539 chr3L 4840405 4840421 chr3L 4840499 4840530 7 106 1.5 0.0 0.8 3.9 125 chr3L 4840405 intergenic CG13707 - chr3L 4840468 intergenic CG13707 - chr3L 4840530 intergenic CG13707 - chr3L_7_4840001 chr3L_4840001 RAL-91 540 chr3L 4907976 4907988 chr3L 4908052 4908064 4 76 3.0 0.5 1.8 1.4 88 chr3L 4907976 intergenic not near genes chr3L 4908020 intergenic not near genes chr3L 4908064 intergenic not near genes chr3L_4_4905001 chr3L_4905001 RAL-91 541 chr3L 5212240 5212269 chr3L 5212322 5212352 14 80 4.5 3.0 3.8 2.9 112 chr3L 5212240 intron shep - chr3L 5212296 intron shep - chr3L 5212352 intron shep - chr3L_14_5210001 chr3L_5210001 RAL-91 542 chr3L 5387894 5387908 chr3L 5388058 5388072 7 163 2.5 1.0 1.8 2.5 178 chr3L 5387894 intergenic not near genes chr3L 5387983 intergenic not near genes chr3L 5388072 intergenic not near genes chr3L_7_5385001 chr3L_5385001 RAL-91 543 chr3L 5903266 5903291 chr3L 5903460 5903486 7 195 4.0 1.5 2.8 1.8 220 chr3L 5903266 exon CG32413 - chr3L 5903376 intron CG32413 - chr3L 5903486 exon CG32413 - chr3L_7_5900001 chr3L_5900001 RAL-91 544 chr3L 5926332 5926348 chr3L 5926506 5926538 BS 4 178 3.0 2.5 2.8 1.1 206 chr3L 5926332 intron Vap-33B + chr3L 5926435 intron Vap-33B + chr3L 5926538 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-91 545 chr3L 6001696 6001715 chr3L 6004396 6004415 jockey 4 2700 0.5 0.0 0.2 3.3 2719 chr3L 6001696 intron PVRAP + chr3L 6003056 intron PVRAP + chr3L 6004415 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-91 546 chr3L 6052654 6052669 chr3L 6052739 6052740 11 83 12.5 24.0 18.2 0.6 86 chr3L 6052654 exon Jon65Aii + chr3L 6052697 intron Jon65Aii + chr3L 6052740 exon Jon65Aii + chr3L_11_6050001 chr3L_6050001 RAL-91 547 chr3L 6116704 6116725 chr3L 6116788 6116808 4 83 0.0 0.5 0.2 3.3 104 chr3L 6116704 intron Ets65A + chr3L 6116756 intron Ets65A + chr3L 6116808 intron Ets65A + chr3L_4_6115001 chr3L_6115001 RAL-91 548 chr3L 6573661 6573689 chr3L 6573764 6573792 6 99 2.5 5.0 3.8 1.2 131 chr3L 6573661 intron,intron CG18769 +,jv - chr3L 6573726 intron,intron CG18769 +,jv - chr3L 6573792 intron,intron CG18769 +,jv - chr3L_6_6570001 chr3L_6570001 RAL-91 549 chr3L 6646062 6646083 chr3L 6646475 6646501 6 415 3.5 1.5 2.5 1.7 439 chr3L 6646062 intergenic not near genes chr3L 6646282 intergenic not near genes chr3L 6646501 intergenic not near genes chr3L_6_6645001 chr3L_6645001 RAL-91 550 chr3L 6654223 6654250 chr3L 6654467 6654498 7 244 1.5 1.0 1.2 3.2 275 chr3L 6654223 intergenic not near genes chr3L 6654360 intergenic not near genes chr3L 6654498 intergenic not near genes chr3L_7_6650001 chr3L_6650001 RAL-91 551 chr3L 6855936 6855954 chr3L 6860721 6860737 Doc 5 4785 3.5 4.5 4.0 1.0 4801 chr3L 6855936 intergenic not near genes chr3L 6858336 intergenic not near genes chr3L 6860737 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-91 552 chr3L 6875683 6875700 chr3L 6875756 6875777 5 75 2.5 0.0 1.2 2.3 94 chr3L 6875683 intergenic not near genes chr3L 6875730 intergenic not near genes chr3L 6875777 intergenic not near genes chr3L_5_6875001 chr3L_6875001 RAL-91 553 chr3L 6887524 6887529 chr3L 6895016 6895021 roo 4 7492 4.5 1.0 2.8 1.1 7497 chr3L 6887524 intergenic not near genes chr3L 6891272 intergenic not near genes chr3L 6895021 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-91 554 chr3L 6887536 6887551 chr3L 6895007 6895040 roo 6 7488 3.0 0.5 1.8 2.1 7504 chr3L 6887536 intergenic not near genes chr3L 6891288 intergenic not near genes chr3L 6895040 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-91 555 chr3L 6942071 6942087 chr3L 6942168 6942186 4 98 3.0 0.5 1.8 1.4 115 chr3L 6942071 intergenic not near genes chr3L 6942128 intergenic not near genes chr3L 6942186 intergenic not near genes chr3L_4_6940001 chr3L_6940001 RAL-91 556 chr3L 6974503 6974524 chr3L 6974604 6974625 5 101 0.0 6.5 3.2 1.2 122 chr3L 6974503 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974625 intron Galphai - chr3L_5_6970001 chr3L_6970001 RAL-91 557 chr3L 7023420 7023424 chr3L 7023514 7023518 4 94 1.0 1.5 1.2 1.8 98 chr3L 7023420 intron Mp + chr3L 7023469 intron Mp + chr3L 7023518 intron Mp + chr3L_4_7020001 chr3L_7020001 RAL-91 558 chr3L 7033177 7033203 chr3L 7033256 7033283 11 79 2.0 4.0 3.0 2.8 106 chr3L 7033177 intron Mp + chr3L 7033230 intron Mp + chr3L 7033283 intron Mp + chr3L_11_7030001 chr3L_7030001 RAL-91 559 chr3L 7052920 7052955 chr3L 7053011 7053046 7 91 0.0 0.0 0.0 7.0 126 chr3L 7052920 3` UTR Mp + chr3L 7052983 3` UTR Mp + chr3L 7053046 3` UTR Mp + chr3L_7_7050001 chr3L_7050001 RAL-91 560 chr3L 7150017 7150044 chr3L 7150095 7150123 9 78 0.0 2.0 1.0 4.5 106 chr3L 7150017 intron corn - chr3L 7150070 intron corn - chr3L 7150123 intron corn - chr3L_9_7150001 chr3L_7150001 RAL-91 561 chr3L 7285461 7285470 chr3L 7285533 7285548 7 77 1.5 1.5 1.5 2.8 87 chr3L 7285461 intron unc-13-4A - chr3L 7285504 intron unc-13-4A - chr3L 7285548 intron unc-13-4A - chr3L_7_7285001 chr3L_7285001 RAL-91 562 chr3L 7318197 7318216 chr3L 7318292 7318311 8 94 1.0 2.0 1.5 3.2 114 chr3L 7318197 intergenic not near genes chr3L 7318254 intergenic not near genes chr3L 7318311 intergenic not near genes chr3L_8_7315001 chr3L_7315001 RAL-91 563 chr3L 7460374 7460405 chr3L 7460458 7460489 4 84 0.0 1.5 0.8 2.2 115 chr3L 7460374 intergenic not near genes chr3L 7460432 intergenic not near genes chr3L 7460489 intergenic not near genes chr3L_4_7460001 chr3L_7460001 RAL-91 564 chr3L 7575279 7575310 chr3L 7575365 7575396 5 86 2.5 1.0 1.8 1.8 117 chr3L 7575279 intergenic not near genes chr3L 7575338 intergenic not near genes chr3L 7575396 intergenic not near genes chr3L_5_7575001 chr3L_7575001 RAL-91 565 chr3L 7665863 7665897 chr3L 7665983 7666004 4 117 1.0 1.0 1.0 2.0 141 chr3L 7665863 intron,intron,exon CG32373 +,Ank2 -,CG44195 - chr3L 7665934 intron,intron,5` UTR CG32373 +,Ank2 -,CG44195 - chr3L 7666004 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_4_7665001 chr3L_7665001 RAL-91 566 chr3L 7749470 7749471 chr3L 11777678 11777678 5 4028207 3.0 19.0 11.0 0.4 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9760001 chr3L_9760001 RAL-91 567 chr3L 7793712 7793729 chr3L 7800764 7800781 297 4 7052 1.5 1.0 1.2 1.8 7069 chr3L 7793712 intron CG32369 - chr3L 7797246 intron CG32369 - chr3L 7800781 intron CG32369 - chr3L_4_7795001 chr3L_7795001 RAL-91 568 chr3L 7829569 7829581 chr3L 7829638 7829664 5 80 1.0 4.0 2.5 1.4 95 chr3L 7829569 intron Pdp1 - chr3L 7829616 intron Pdp1 - chr3L 7829664 intron Pdp1 - chr3L_5_7825001 chr3L_7825001 RAL-91 569 chr3L 7882163 7882195 chr3L 7882254 7882286 4 91 0.5 0.0 0.2 3.3 123 chr3L 7882163 intron CG32365 + chr3L 7882224 intron CG32365 + chr3L 7882286 intron CG32365 + chr3L_4_7880001 chr3L_7880001 RAL-91 570 chr3L 7883746 7883767 chr3L 7883903 7883923 6 156 2.0 0.0 1.0 3.0 177 chr3L 7883746 intron CG32365 + chr3L 7883834 intron CG32365 + chr3L 7883923 intron CG32365 + chr3L_6_7880001 chr3L_7880001 RAL-91 571 chr3L 8041553 8041568 chr3L 8041631 8041643 6 76 5.5 2.5 4.0 1.2 90 chr3L 8041553 intron nmo + chr3L 8041598 intron nmo + chr3L 8041643 intron nmo + chr3L_6_8040001 chr3L_8040001 RAL-91 572 chr3L 8203554 8203567 chr3L 8203621 8203633 8 68 2.0 3.0 2.5 2.3 79 chr3L 8203554 intergenic CG13679 + chr3L 8203594 intergenic CG13679 + chr3L 8203633 intergenic CG13679 + chr3L_8_8200001 chr3L_8200001 RAL-91 573 chr3L 8295791 8295824 chr3L 8295949 8295982 8 157 0.5 1.5 1.0 4.0 191 chr3L 8295791 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295982 intergenic not near genes chr3L_8_8295001 chr3L_8295001 RAL-91 574 chr3L 8551755 8551769 chr3L 8551838 8551852 4 83 1.5 5.0 3.2 1.0 97 chr3L 8551755 intron rhea + chr3L 8551804 intron rhea + chr3L 8551852 intron rhea + chr3L_4_8550001 chr3L_8550001 RAL-91 575 chr3L 8643574 8643607 chr3L 8643650 8643683 11 76 1.0 1.5 1.2 5.0 109 chr3L 8643574 3` UTR Cpr66D + chr3L 8643628 intergenic Cpr66D + chr3L 8643683 intergenic Cpr66D + chr3L_11_8640001 chr3L_8640001 RAL-91 576 chr3L 8693011 8693025 chr3L 8693117 8693131 5 106 2.0 3.0 2.5 1.4 120 chr3L 8693011 5` UTR CR44526 + chr3L 8693071 5` UTR CR44526 + chr3L 8693131 5` UTR CR44526 + chr3L_5_8690001 chr3L_8690001 RAL-91 577 chr3L 8822663 8822668 chr3L 8822725 8822744 4 74 2.5 4.5 3.5 0.9 81 chr3L 8822663 intergenic not near genes chr3L 8822704 intergenic not near genes chr3L 8822744 intergenic not near genes chr3L_4_8820001 chr3L_8820001 RAL-91 578 chr3L 8851925 8851946 chr3L 8851998 8852011 8 74 2.5 1.5 2.0 2.7 86 chr3L 8851925 intron dally + chr3L 8851968 intron dally + chr3L 8852011 intron dally + chr3L_8_8850001 chr3L_8850001 RAL-91 579 chr3L 9076927 9076956 chr3L 9084487 9084511 412 4 7559 2.0 1.5 1.8 1.4 7584 chr3L 9076927 exon Tequila + chr3L 9080719 intron Tequila + chr3L 9084511 exon Tequila + chr3L_4_9080001 chr3L_9080001 RAL-91 580 chr3L 9130560 9130578 chr3L 9134321 9134339 412 6 3761 6.0 6.5 6.2 0.8 3779 chr3L 9130560 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134339 intergenic Dhpr + chr3L_6_9130001 chr3L_9130001 RAL-91 581 chr3L 9130579 9130580 chr3L 9134319 9134341 412 4 3754 6.0 6.0 6.0 0.6 3762 chr3L 9130579 intergenic bol - chr3L 9132460 intergenic not near genes chr3L 9134341 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-91 582 chr3L 9219245 9219272 chr3L 9219915 9219944 jockey 4 672 1.5 2.5 2.0 1.3 699 chr3L 9219245 intergenic not near genes chr3L 9219594 intergenic not near genes chr3L 9219944 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-91 583 chr3L 9290045 9290063 chr3L 9290121 9290139 6 76 0.5 0.0 0.2 5.0 94 chr3L 9290045 intergenic not near genes chr3L 9290092 intergenic not near genes chr3L 9290139 intergenic not near genes chr3L_6_9290001 chr3L_9290001 RAL-91 584 chr3L 9313027 9313027 chr3L 11777678 11777678 4 2464651 5.0 19.0 12.0 0.3 2464651 chr3L 9313027 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_10545001 chr3L_10545001 RAL-91 585 chr3L 9348633 9348660 chr3L 9348779 9348801 4 145 2.0 2.0 2.0 1.3 168 chr3L 9348633 intergenic PGRP-LC + chr3L 9348717 intergenic PGRP-LC + chr3L 9348801 intergenic PGRP-LC + chr3L_4_9345001 chr3L_9345001 RAL-91 586 chr3L 9359606 9359620 chr3L 9359696 9359711 4 91 1.5 0.0 0.8 2.2 105 chr3L 9359606 3` UTR CG32039 + chr3L 9359658 3` UTR CG32039 + chr3L 9359711 3` UTR CG32039 + chr3L_4_9355001 chr3L_9355001 RAL-91 587 chr3L 9390847 9390870 chr3L 9390977 9391000 6 130 2.5 0.5 1.5 2.4 153 chr3L 9390847 intron CG4080 - chr3L 9390924 intron CG4080 - chr3L 9391000 intron CG4080 - chr3L_6_9390001 chr3L_9390001 RAL-91 588 chr3L 9419914 9419932 chr3L 9419978 9420008 6 72 3.5 3.0 3.2 1.4 94 chr3L 9419914 intron CG3967 - chr3L 9419961 intron CG3967 - chr3L 9420008 intron CG3967 - chr3L_6_9415001 chr3L_9415001 RAL-91 589 chr3L 9443513 9443536 chr3L 9445304 9445327 S-element 5 1791 0.0 1.0 0.5 3.3 1814 chr3L 9443513 intron CG33926 + chr3L 9444420 intron CG33926 + chr3L 9445327 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-91 590 chr3L 9501698 9501717 chr3L 9502184 9502200 roo 4 485 0.5 1.0 0.8 2.2 502 chr3L 9501698 intron path - chr3L 9501949 intron path - chr3L 9502200 intron path - chr3L_4_9500001 chr3L_9500001 RAL-91 591 chr3L 9510946 9510958 chr3L 9511023 9511037 4 78 0.0 3.0 1.5 1.6 91 chr3L 9510946 intron RpS9 - chr3L 9510992 intron RpS9 - chr3L 9511037 intron RpS9 - chr3L_4_9510001 chr3L_9510001 RAL-91 592 chr3L 9533768 9533785 chr3L 9541328 9541330 412 5 7557 1.5 4.5 3.0 1.2 7562 chr3L 9533768 intergenic not near genes chr3L 9537549 intergenic not near genes chr3L 9541330 intergenic not near genes chr3L_5_9535001 chr3L_9535001 RAL-91 593 chr3L 9741624 9741655 chr3L 9741716 9741747 4 92 0.0 2.5 1.2 1.8 123 chr3L 9741624 intron,intron CG42268 -,CR44348 + chr3L 9741686 intron,intron CG42268 -,CR44348 + chr3L 9741747 intron,intron CG42268 -,CR44348 + chr3L_4_9740001 chr3L_9740001 RAL-91 594 chr3L 9895359 9895388 chr3L 9895438 9895444 13 75 1.0 1.5 1.2 5.9 85 chr3L 9895359 3` UTR CG6707 - chr3L 9895402 3` UTR CG6707 - chr3L 9895444 3` UTR CG6707 - chr3L_13_9895001 chr3L_9895001 RAL-91 595 chr3L 9918883 9918909 chr3L 9918974 9919004 7 94 3.5 1.0 2.2 2.2 121 chr3L 9918883 intron CG34356 + chr3L 9918944 intron CG34356 + chr3L 9919004 intron CG34356 + chr3L_7_9915001 chr3L_9915001 RAL-91 596 chr3L 9929674 9929701 chr3L 9938454 9938476 roo 10 8779 1.5 2.5 2.0 3.3 8802 chr3L 9929674 intron CG34356 + chr3L 9934075 intron CG34356 + chr3L 9938476 intron CG34356 + chr3L_10_9930001 chr3L_9930001 RAL-91 597 chr3L 9986882 9986896 chr3L 9987010 9987013 8 126 2.0 2.0 2.0 2.7 131 chr3L 9986882 intron dpr6 + chr3L 9986948 intron dpr6 + chr3L 9987013 intron dpr6 + chr3L_8_9985001 chr3L_9985001 RAL-91 598 chr3L 10003159 10003178 chr3L 10003255 10003274 9 96 3.5 4.0 3.8 1.9 115 chr3L 10003159 intron dpr6 + chr3L 10003216 intron dpr6 + chr3L 10003274 intron dpr6 + chr3L_9_10000001 chr3L_10000001 RAL-91 599 chr3L 10043890 10043906 chr3L 10043972 10043988 4 82 2.0 5.0 3.5 0.9 98 chr3L 10043890 intron dpr6 + chr3L 10043939 intron dpr6 + chr3L 10043988 intron dpr6 + chr3L_4_10040001 chr3L_10040001 RAL-91 600 chr3L 10148400 10148429 chr3L 10148486 10148515 7 86 0.0 1.0 0.5 4.7 115 chr3L 10148400 3` UTR dpr10 - chr3L 10148458 3` UTR dpr10 - chr3L 10148515 3` UTR dpr10 - chr3L_7_10145001 chr3L_10145001 RAL-91 601 chr3L 10308738 10308773 chr3L 10308815 10308848 7 77 0.5 2.5 1.5 2.8 110 chr3L 10308738 intergenic not near genes chr3L 10308793 intergenic not near genes chr3L 10308848 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-91 602 chr3L 10417582 10417600 chr3L 10417658 10417676 4 76 3.5 2.0 2.8 1.1 94 chr3L 10417582 intergenic not near genes chr3L 10417629 intergenic not near genes chr3L 10417676 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-91 603 chr3L 10618273 10618281 chr3L 10619543 10619552 4 1270 4.0 1.0 2.5 1.1 1279 chr3L 10618273 intergenic not near genes chr3L 10618912 intergenic not near genes chr3L 10619552 intergenic not near genes chr3L_4_10615001 chr3L_10615001 RAL-91 604 chr3L 11087059 11087089 chr3L 11088847 11088875 S-element 4 1788 1.5 2.0 1.8 1.4 1816 chr3L 11087059 intron JIL-1 - chr3L 11087967 intron JIL-1 - chr3L 11088875 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-91 605 chr3L 11249863 11249882 chr3L 11249945 11249965 6 83 1.5 1.0 1.2 2.7 102 chr3L 11249863 5` UTR CR44717 + chr3L 11249914 5` UTR CR44717 + chr3L 11249965 5` UTR CR44717 + chr3L_6_11245001 chr3L_11245001 RAL-91 606 chr3L 11587922 11587947 chr3L 11587998 11588023 7 76 4.5 3.5 4.0 1.4 101 chr3L 11587922 intergenic rt - chr3L 11587972 intergenic rt - chr3L 11588023 intergenic rt - chr3L_7_11585001 chr3L_11585001 RAL-91 607 chr3L 11588737 11588758 chr3L 11588892 11588911 10 152 1.0 5.0 3.0 2.5 174 chr3L 11588737 intergenic not near genes chr3L 11588824 intergenic not near genes chr3L 11588911 intergenic not near genes chr3L_10_11585001 chr3L_11585001 RAL-91 608 chr3L 11744011 11744040 chr3L 11744119 11744148 11 106 3.0 0.0 1.5 4.4 137 chr3L 11744011 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744148 intron CG6024 - chr3L_11_11740001 chr3L_11740001 RAL-91 609 chr3L 11757926 11757933 chr3L 11758023 11758030 4 97 3.5 0.5 2.0 1.3 104 chr3L 11757926 intron CG6024 - chr3L 11757978 intron CG6024 - chr3L 11758030 intron CG6024 - chr3L_4_11755001 chr3L_11755001 RAL-91 610 chr3L 7749470 7749471 chr3L 11777678 11777678 8 4028208 3.0 19.0 11.0 0.7 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_8_9760001 chr3L_9760001 RAL-91 611 chr3L 11816793 11816811 chr3L 11816894 11816895 4 97 3.0 1.0 2.0 1.3 102 chr3L 11816793 3` UTR CG5946 - chr3L 11816844 3` UTR CG5946 - chr3L 11816895 3` UTR CG5946 - chr3L_4_11815001 chr3L_11815001 RAL-91 612 chr3L 11864559 11864584 chr3L 11865854 11865879 pogo 6 1294 2.0 0.5 1.2 2.7 1320 chr3L 11864559 intron CG44837 - chr3L 11865219 intron CG44837 - chr3L 11865879 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-91 613 chr3L 11897170 11897180 chr3L 11897405 11897415 4 235 0.5 2.5 1.5 1.6 245 chr3L 11897170 intron CG44837 - chr3L 11897292 intron CG44837 - chr3L 11897415 intron CG44837 - chr3L_4_11895001 chr3L_11895001 RAL-91 614 chr3L 11943497 11943521 chr3L 11943598 11943622 4 101 0.5 1.0 0.8 2.2 125 chr3L 11943497 intergenic Rpt4R +,CG5883 - chr3L 11943560 intergenic Rpt4R +,CG5883 - chr3L 11943622 intergenic CG5883 -,Rpt4R + chr3L_4_11940001 chr3L_11940001 RAL-91 615 chr3L 12052703 12052736 chr3L 12052792 12052812 7 87 4.5 2.5 3.5 1.6 109 chr3L 12052703 intron rols - chr3L 12052758 intron rols - chr3L 12052812 intron rols - chr3L_7_12050001 chr3L_12050001 RAL-91 616 chr3L 12276681 12276711 chr3L 12276767 12276796 11 82 0.5 5.0 2.8 2.9 115 chr3L 12276681 intron CG4300 - chr3L 12276738 intron CG4300 - chr3L 12276796 intron CG4300 - chr3L_11_12275001 chr3L_12275001 RAL-91 617 chr3L 12304093 12304117 chr3L 12304168 12304193 10 74 3.5 5.5 4.5 1.8 100 chr3L 12304093 intergenic not near genes chr3L 12304143 intergenic not near genes chr3L 12304193 intergenic not near genes chr3L_10_12300001 chr3L_12300001 RAL-91 618 chr3L 12312486 12312506 chr3L 12312562 12312583 9 77 3.5 3.5 3.5 2.0 97 chr3L 12312486 intergenic not near genes chr3L 12312534 intergenic not near genes chr3L 12312583 intergenic not near genes chr3L_9_12310001 chr3L_12310001 RAL-91 619 chr3L 12318626 12318660 chr3L 12318714 12318733 14 81 4.0 7.0 5.5 2.2 107 chr3L 12318626 intergenic not near genes chr3L 12318680 intergenic not near genes chr3L 12318733 intergenic not near genes chr3L_14_12315001 chr3L_12315001 RAL-91 620 chr3L 12412739 12412753 chr3L 12412824 12412838 5 85 1.5 0.5 1.0 2.5 99 chr3L 12412739 intron CG32103 - chr3L 12412788 intron CG32103 - chr3L 12412838 intron CG32103 - chr3L_5_12410001 chr3L_12410001 RAL-91 621 chr3L 12476289 12476323 chr3L 12476366 12476399 8 76 1.0 0.5 0.8 4.4 110 chr3L 12476289 intron CG10663 - chr3L 12476344 intron CG10663 - chr3L 12476399 intron CG10663 - chr3L_8_12475001 chr3L_12475001 RAL-91 622 chr3L 12578051 12578068 chr3L 12578139 12578156 6 88 1.0 1.0 1.0 3.0 105 chr3L 12578051 intergenic not near genes chr3L 12578104 intergenic not near genes chr3L 12578156 intergenic not near genes chr3L_6_12575001 chr3L_12575001 RAL-91 623 chr3L 12591632 12591638 chr3L 12591709 12591713 4 76 4.0 6.0 5.0 0.7 81 chr3L 12591632 intron ara + chr3L 12591672 intron ara + chr3L 12591713 intron ara + chr3L_4_12590001 chr3L_12590001 RAL-91 624 chr3L 12654382 12654413 chr3L 12654462 12654493 4 80 0.5 0.5 0.5 2.7 111 chr3L 12654382 intergenic not near genes chr3L 12654438 intergenic not near genes chr3L 12654493 intergenic not near genes chr3L_4_12650001 chr3L_12650001 RAL-91 625 chr3L 12706647 12706653 chr3L 12706774 12706780 4 127 1.5 1.5 1.5 1.6 133 chr3L 12706647 intron mirr + chr3L 12706714 intron mirr + chr3L 12706780 intron mirr + chr3L_4_12705001 chr3L_12705001 RAL-91 626 chr3L 12957786 12957818 chr3L 12962267 12962300 copia 5 4482 0.5 1.5 1.0 2.5 4514 chr3L 12957786 intergenic not near genes chr3L 12960043 intergenic not near genes chr3L 12962300 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-91 627 chr3L 13056456 13056735 chr3L 13056613 13056820 4 100 0.0 0.0 0.0 4.0 364 chr3L 13056456 intergenic not near genes chr3L 13056638 intergenic not near genes chr3L 13056820 intergenic not near genes chr3L_4_13055001 chr3L_13055001 RAL-91 628 chr3L 13088613 13088647 chr3L 13088707 13088740 4 94 0.5 0.0 0.2 3.3 127 chr3L 13088613 3` UTR CG11251 - chr3L 13088676 3` UTR CG11251 - chr3L 13088740 3` UTR CG11251 - chr3L_4_13085001 chr3L_13085001 RAL-91 629 chr3L 13142149 13142169 chr3L 13142262 13142282 6 113 0.5 0.5 0.5 4.0 133 chr3L 13142149 intergenic not near genes chr3L 13142216 intergenic not near genes chr3L 13142282 intergenic not near genes chr3L_6_13140001 chr3L_13140001 RAL-91 630 chr3L 13206234 13206251 chr3L 13206315 13206319 5 79 3.5 0.0 1.8 1.8 85 chr3L 13206234 intergenic not near genes chr3L 13206276 intergenic not near genes chr3L 13206319 intergenic not near genes chr3L_5_13205001 chr3L_13205001 RAL-91 631 chr3L 13525154 13525190 chr3L 13532950 13532986 roo 9 7795 2.0 1.5 1.8 3.2 7832 chr3L 13525154 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-91 632 chr3L 13611081 13611117 chr3L 13611200 13611234 8 116 3.5 2.0 2.8 2.1 153 chr3L 13611081 intron bru-3 - chr3L 13611158 intron bru-3 - chr3L 13611234 intron bru-3 - chr3L_8_13610001 chr3L_13610001 RAL-91 633 chr3L 13703432 13703458 chr3L 13703518 13703544 4 86 1.0 1.0 1.0 2.0 112 chr3L 13703432 intron bru-3 - chr3L 13703488 intron bru-3 - chr3L 13703544 intron bru-3 - chr3L_4_13700001 chr3L_13700001 RAL-91 634 chr3L 13721044 13721053 chr3L 13721128 13721137 5 83 2.0 6.0 4.0 1.0 93 chr3L 13721044 intron bru-3 - chr3L 13721090 intron bru-3 - chr3L 13721137 intron bru-3 - chr3L_5_13720001 chr3L_13720001 RAL-91 635 chr3L 14167066 14167090 chr3L 14167323 14167347 6 257 0.5 0.5 0.5 4.0 281 chr3L 14167066 intergenic not near genes chr3L 14167206 intergenic not near genes chr3L 14167347 intergenic not near genes chr3L_6_14165001 chr3L_14165001 RAL-91 636 chr3L 14312038 14312059 chr3L 14316843 14316849 X-element 7 4805 0.0 0.5 0.2 5.8 4811 chr3L 14312038 exon fz + chr3L 14314444 intron fz + chr3L 14316849 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-91 637 chr3L 14411865 14411899 chr3L 14411944 14411978 10 79 0.5 2.0 1.2 4.5 113 chr3L 14411865 intron CG3919 + chr3L 14411922 intron CG3919 + chr3L 14411978 intron CG3919 + chr3L_10_14410001 chr3L_14410001 RAL-91 638 chr3L 14741144 14741164 chr3L 14741222 14741242 5 78 1.0 3.0 2.0 1.7 98 chr3L 14741144 intron ome + chr3L 14741193 intron ome + chr3L 14741242 intron ome + chr3L_5_14740001 chr3L_14740001 RAL-91 639 chr3L 14893622 14893643 chr3L 14893709 14893718 8 85 2.0 2.5 2.2 2.5 96 chr3L 14893622 intergenic CG34245 - chr3L 14893670 intergenic CG34245 - chr3L 14893718 intergenic CG34245 - chr3L_8_14890001 chr3L_14890001 RAL-91 640 chr3L 14895906 14895928 chr3L 14896002 14896024 5 96 2.0 2.0 2.0 1.7 118 chr3L 14895906 intergenic not near genes chr3L 14895965 intergenic not near genes chr3L 14896024 intergenic not near genes chr3L_5_14895001 chr3L_14895001 RAL-91 641 chr3L 15021641 15021650 chr3L 15021732 15021742 6 92 1.0 0.0 0.5 4.0 101 chr3L 15021641 intron Sytbeta - chr3L 15021692 intron Sytbeta - chr3L 15021742 intron Sytbeta - chr3L_6_15020001 chr3L_15020001 RAL-91 642 chr3L 15085051 15085082 chr3L 15086217 15086248 1360 4 1165 2.0 0.0 1.0 2.0 1197 chr3L 15085051 intron cp309 - chr3L 15085650 intron cp309 - chr3L 15086248 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-91 643 chr3L 15132560 15132594 chr3L 15132652 15132685 4 90 1.5 3.5 2.5 1.1 125 chr3L 15132560 exon CG12316 - chr3L 15132622 exon CG12316 - chr3L 15132685 exon CG12316 - chr3L_4_15130001 chr3L_15130001 RAL-91 644 chr3L 15151217 15151232 chr3L 15151401 15151416 4 184 1.5 2.0 1.8 1.4 199 chr3L 15151217 intron FucTA + chr3L 15151316 intron FucTA + chr3L 15151416 intron FucTA + chr3L_4_15150001 chr3L_15150001 RAL-91 645 chr3L 3862384 3862390 chr3L 15198943 15198945 4 11336556 7.5 6.5 7.0 0.5 11336561 chr3L 3862384 intergenic not near genes chr3L 9530664 exon Or67a + chr3L 15198945 intergenic not near genes chr3L_4_9530001 chr3L_9530001 RAL-91 646 chr3L 15575973 15575989 chr3L 15576072 15576088 5 99 0.5 2.0 1.2 2.3 115 chr3L 15575973 3` UTR CG6498 + chr3L 15576030 3` UTR CG6498 + chr3L 15576088 3` UTR CG6498 + chr3L_5_15575001 chr3L_15575001 RAL-91 647 chr3L 15615938 15615961 chr3L 15616034 15616057 7 96 1.0 2.0 1.5 2.8 119 chr3L 15615938 intron comm3 - chr3L 15615998 intron comm3 - chr3L 15616057 intron comm3 - chr3L_7_15615001 chr3L_15615001 RAL-91 648 chr3L 15756884 15756909 chr3L 15756967 15756990 4 82 3.0 0.0 1.5 1.6 106 chr3L 15756884 intergenic not near genes chr3L 15756937 intergenic not near genes chr3L 15756990 intergenic not near genes chr3L_4_15755001 chr3L_15755001 RAL-91 649 chr3L 15981675 15981687 chr3L 15981761 15981768 5 85 4.0 1.5 2.8 1.3 93 chr3L 15981675 intron,3` UTR brm -,CG17027 + chr3L 15981722 intron,3` UTR brm -,CG17027 + chr3L 15981768 intron,3` UTR brm -,CG17027 + chr3L_5_15980001 chr3L_15980001 RAL-91 650 chr3L 15987713 15987745 chr3L 15989941 15989973 14 2230 33.5 47.5 40.5 0.3 2260 chr3L 15987713 exon DNApol-delta - chr3L 15988843 exon Hip14 + chr3L 15989973 exon Hip14 + chr3L_14_15985001 chr3L_15985001 RAL-91 651 chr3L 16102265 16102297 chr3L 16102350 16102382 14 85 4.0 2.0 3.0 3.5 117 chr3L 16102265 exon CG5414 + chr3L 16102324 intron CG5414 + chr3L 16102382 intron CG5414 + chr3L_14_16100001 chr3L_16100001 RAL-91 652 chr3L 16162595 16162627 chr3L 16162679 16162706 6 82 3.5 1.0 2.2 1.9 111 chr3L 16162595 intron CG5151 - chr3L 16162650 intron CG5151 - chr3L 16162706 intron CG5151 - chr3L_6_16160001 chr3L_16160001 RAL-91 653 chr3L 16182064 16182081 chr3L 16182184 16182199 5 119 1.0 2.5 1.8 1.8 135 chr3L 16182064 intergenic not near genes chr3L 16182132 intergenic not near genes chr3L 16182199 intergenic not near genes chr3L_5_16180001 chr3L_16180001 RAL-91 654 chr3L 16184104 16184125 chr3L 16188923 16188944 X-element 5 4819 1.5 1.5 1.5 2.0 4840 chr3L 16184104 intergenic not near genes chr3L 16186524 intergenic not near genes chr3L 16188944 intergenic not near genes chr3L_5_16185001 chr3L_16185001 RAL-91 655 chr3L 16236346 16236369 chr3L 16236461 16236484 4 115 0.0 0.0 0.0 4.0 138 chr3L 16236346 3` UTR l(3)72Dp + chr3L 16236415 3` UTR l(3)72Dp + chr3L 16236484 3` UTR l(3)72Dp + chr3L_4_16235001 chr3L_16235001 RAL-91 656 chr3L 16304864 16304883 chr3L 16304942 16304961 7 77 5.5 1.5 3.5 1.6 97 chr3L 16304864 intergenic CG43249 +,CG13043 - chr3L 16304912 intergenic CG43249 +,CG13043 - chr3L 16304961 intergenic CG13043 -,CG43249 + chr3L_7_16300001 chr3L_16300001 RAL-91 657 chr3L 16340275 16340282 chr3L 16340399 16340406 4 124 6.5 3.0 4.8 0.7 131 chr3L 16340275 intron CG4998 + chr3L 16340340 intron CG4998 + chr3L 16340406 intron CG4998 + chr3L_4_16340001 chr3L_16340001 RAL-91 658 chr3L 16450039 16450053 chr3L 16450124 16450138 5 85 0.0 4.5 2.2 1.6 99 chr3L 16450039 intron,intron CG33158 +,dsx-c73A - chr3L 16450088 intron,intron CG33158 +,dsx-c73A - chr3L 16450138 intron,intron CG33158 +,dsx-c73A - chr3L_5_16450001 chr3L_16450001 RAL-91 659 chr3L 16493983 16494011 chr3L 16494500 16494528 jockey 10 517 5.5 5.5 5.5 1.5 545 chr3L 16493983 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494256 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494528 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_10_16490001 chr3L_16490001 RAL-91 660 chr3L 16818750 16818780 chr3L 16818826 16818856 7 76 1.0 0.5 0.8 3.9 106 chr3L 16818750 intron,intron nudC +,CG13024 - chr3L 16818803 intron,intron nudC +,CG13024 - chr3L 16818856 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-91 661 chr3L 16945729 16945755 chr3L 16954882 16954908 roo 11 9149 3.5 2.0 2.8 2.9 9179 chr3L 16945729 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954908 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-91 662 chr3L 16971218 16971253 chr3L 16971296 16971331 11 78 3.0 6.0 4.5 2.0 113 chr3L 16971218 intron Exn + chr3L 16971274 intron Exn + chr3L 16971331 intron Exn + chr3L_11_16970001 chr3L_16970001 RAL-91 663 chr3L 17008446 17008474 chr3L 17008526 17008556 10 78 2.5 5.0 3.8 2.1 110 chr3L 17008446 intron CG3764 - chr3L 17008501 intron CG3764 - chr3L 17008556 intron CG3764 - chr3L_10_17005001 chr3L_17005001 RAL-91 664 chr3L 17085005 17085036 chr3L 17094154 17094185 roo 4 9149 0.5 2.0 1.2 1.8 9180 chr3L 17085005 intron Rbp6 - chr3L 17089595 intron Rbp6 - chr3L 17094185 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-91 665 chr3L 17248003 17248032 chr3L 17248372 17248403 8 364 5.5 1.5 3.5 1.8 400 chr3L 17248003 intron CR43870 + chr3L 17248203 intron CR43870 + chr3L 17248403 intron CR43870 + chr3L_8_17245001 chr3L_17245001 RAL-91 666 chr3L 17386802 17386827 chr3L 17386879 17386904 8 75 7.0 4.5 5.8 1.2 102 chr3L 17386802 intron CG13731 - chr3L 17386853 intron CG13731 - chr3L 17386904 intron CG13731 - chr3L_8_17385001 chr3L_17385001 RAL-91 667 chr3L 17411029 17411059 chr3L 17411299 17411327 12 270 2.0 1.5 1.8 4.3 298 chr3L 17411029 intron blot - chr3L 17411178 intron blot - chr3L 17411327 intron blot - chr3L_12_17410001 chr3L_17410001 RAL-91 668 chr3L 17510732 17510765 chr3L 17510816 17510848 13 83 2.5 3.0 2.8 3.4 116 chr3L 17510732 exon Oatp74D + chr3L 17510790 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_13_17510001 chr3L_17510001 RAL-91 669 chr3L 17516990 17517009 chr3L 17524548 17524566 412 5 7558 4.0 4.0 4.0 1.0 7576 chr3L 17516990 intron CG7564 + chr3L 17520778 intron CG7564 + chr3L 17524566 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-91 670 chr3L 17636107 17636127 chr3L 17636255 17636274 6 147 3.0 1.5 2.2 1.9 167 chr3L 17636107 intron CG7497 + chr3L 17636190 intron CG7497 + chr3L 17636274 intron CG7497 + chr3L_6_17635001 chr3L_17635001 RAL-91 671 chr3L 17758040 17758064 chr3L 17758108 17758136 4 71 3.0 4.5 3.8 0.8 96 chr3L 17758040 intron,intron Adgf-A -,Msi - chr3L 17758088 intron,intron Adgf-A -,Msi - chr3L 17758136 intron,intron,5` UTR Adgf-A -,Msi -,CG32182 + chr3L_4_17755001 chr3L_17755001 RAL-91 672 chr3L 17837625 17837656 chr3L 17837711 17837744 18 87 2.5 6.5 4.5 3.3 119 chr3L 17837625 exon Grd + chr3L 17837684 intron Grd + chr3L 17837744 exon Grd + chr3L_18_17835001 chr3L_17835001 RAL-91 673 chr3L 18092784 18092801 chr3L 18092899 18092916 4 115 1.5 0.0 0.8 2.2 132 chr3L 18092784 intron CG13698 - chr3L 18092850 intron CG13698 - chr3L 18092916 intron CG13698 - chr3L_4_18090001 chr3L_18090001 RAL-91 674 chr3L 18138161 18138174 chr3L 18138245 18138258 6 84 4.0 3.0 3.5 1.3 97 chr3L 18138161 intergenic not near genes chr3L 18138210 intergenic not near genes chr3L 18138258 intergenic not near genes chr3L_6_18135001 chr3L_18135001 RAL-91 675 chr3L 9013689 9013695 chr3L 18417066 18417066 4 9403374 26.0 10.0 18.0 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-91 676 chr3L 18417066 18417066 chr3L 19220633 19220637 5 803570 10.5 7.5 9.0 0.5 803571 chr3L 18417066 intergenic not near genes chr3L 18818852 intron CG14073 - chr3L 19220637 intron fz2 - chr3L_5_18815001 chr3L_18815001 RAL-91 677 chr3L 18528632 18528658 chr3L 18537793 18537819 roo 6 9161 2.0 0.5 1.2 2.7 9187 chr3L 18528632 intergenic not near genes chr3L 18533226 intergenic not near genes chr3L 18537819 intergenic not near genes chr3L_6_18530001 chr3L_18530001 RAL-91 678 chr3L 18538633 18538659 chr3L 18539126 18539151 6 493 1.5 2.0 1.8 2.1 518 chr3L 18538633 intergenic not near genes chr3L 18538892 intergenic not near genes chr3L 18539151 intergenic not near genes chr3L_6_18535001 chr3L_18535001 RAL-91 679 chr3L 18567039 18567054 chr3L 18567125 18567139 6 86 0.0 2.5 1.2 2.7 100 chr3L 18567039 intron AstC-R1 + chr3L 18567089 intron AstC-R1 + chr3L 18567139 intron AstC-R1 + chr3L_6_18565001 chr3L_18565001 RAL-91 680 chr3L 18607083 18607099 chr3L 18607148 18607178 4 77 0.5 1.0 0.8 2.2 95 chr3L 18607083 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18607130 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18607178 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_4_18605001 chr3L_18605001 RAL-91 681 chr3L 18656183 18656219 chr3L 18656268 18656304 15 83 3.5 1.5 2.5 4.3 121 chr3L 18656183 intron MYPT-75D + chr3L 18656244 intron MYPT-75D + chr3L 18656304 intron MYPT-75D + chr3L_15_18655001 chr3L_18655001 RAL-91 682 chr3L 18701141 18701162 chr3L 18701228 18701250 5 88 2.0 3.5 2.8 1.3 109 chr3L 18701141 intergenic not near genes chr3L 18701196 intergenic not near genes chr3L 18701250 intergenic not near genes chr3L_5_18700001 chr3L_18700001 RAL-91 683 chr3L 18721771 18721803 chr3L 18721861 18721894 7 90 0.0 0.0 0.0 7.0 123 chr3L 18721771 intergenic CG12477 - chr3L 18721832 intergenic CG12477 - chr3L 18721894 3` UTR CG12477 - chr3L_7_18720001 chr3L_18720001 RAL-91 684 chr3L 18772414 18772441 chr3L 18781095 18781122 roo 7 8681 1.0 1.5 1.2 3.2 8708 chr3L 18772414 intron ftz-f1 - chr3L 18776768 intron ftz-f1 - chr3L 18781122 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-91 685 chr3L 19008843 19008872 chr3L 19009178 19009210 jockey 10 337 1.0 3.5 2.2 3.1 367 chr3L 19008843 intron nkd - chr3L 19009026 intron nkd - chr3L 19009210 intron nkd - chr3L_10_19005001 chr3L_19005001 RAL-91 686 chr3L 19082038 19082068 chr3L 19082140 19082169 5 102 2.5 1.5 2.0 1.7 131 chr3L 19082038 intron Mkp3 - chr3L 19082104 intron Mkp3 - chr3L 19082169 intron Mkp3 - chr3L_5_19080001 chr3L_19080001 RAL-91 687 chr3L 19115655 19115674 chr3L 19115830 19115852 BS 5 175 4.0 5.5 4.8 0.9 197 chr3L 19115655 intron CG14082 - chr3L 19115754 intron CG14082 - chr3L 19115852 intron CG14082 - chr3L_5_19115001 chr3L_19115001 RAL-91 688 chr3L 19117042 19117073 chr3L 19124489 19124520 mdg1 6 7445 1.0 5.0 3.0 1.5 7478 chr3L 19117042 intron CG14082 - chr3L 19120781 intron CG14082 - chr3L 19124520 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-91 689 chr3L 19133672 19133702 chr3L 19133756 19133785 6 82 0.0 1.5 0.8 3.3 113 chr3L 19133672 intron CG14082 - chr3L 19133728 intron CG14082 - chr3L 19133785 intron CG14082 - chr3L_6_19130001 chr3L_19130001 RAL-91 690 chr3L 19182384 19182418 chr3L 19182465 19182468 6 75 0.0 1.5 0.8 3.3 84 chr3L 19182384 intron fz2 - chr3L 19182426 intron fz2 - chr3L 19182468 intron fz2 - chr3L_6_19180001 chr3L_19180001 RAL-91 691 chr3L 19244119 19244139 chr3L 19244190 19244217 11 76 1.5 3.0 2.2 3.4 98 chr3L 19244119 intergenic not near genes chr3L 19244168 intergenic not near genes chr3L 19244217 intergenic not near genes chr3L_11_19240001 chr3L_19240001 RAL-91 692 chr3L 19282268 19282296 chr3L 19282360 19282392 6 95 2.0 1.5 1.8 2.1 124 chr3L 19282268 3` UTR Gbs-76A - chr3L 19282330 3` UTR Gbs-76A - chr3L 19282392 3` UTR Gbs-76A - chr3L_6_19280001 chr3L_19280001 RAL-91 693 chr3L 19404980 19405006 chr3L 19405055 19405056 4 70 1.5 1.0 1.2 1.8 76 chr3L 19404980 intron CG32206 - chr3L 19405018 intron CG32206 - chr3L 19405056 intron CG32206 - chr3L_4_19405001 chr3L_19405001 RAL-91 694 chr3L 19417797 19417829 chr3L 19417877 19417909 7 79 2.5 1.5 2.0 2.3 112 chr3L 19417797 intergenic not near genes chr3L 19417853 intergenic not near genes chr3L 19417909 intergenic not near genes chr3L_7_19415001 chr3L_19415001 RAL-91 695 chr3L 19426760 19426773 chr3L 19426832 19426850 5 75 2.0 4.0 3.0 1.2 90 chr3L 19426760 intergenic not near genes chr3L 19426805 intergenic not near genes chr3L 19426850 intergenic not near genes chr3L_5_19425001 chr3L_19425001 RAL-91 696 chr3L 19527941 19527957 chr3L 19528020 19528036 6 79 0.0 2.0 1.0 3.0 95 chr3L 19527941 intergenic not near genes chr3L 19527988 intergenic not near genes chr3L 19528036 intergenic not near genes chr3L_6_19525001 chr3L_19525001 RAL-91 697 chr3L 19861825 19861841 chr3L 19863613 19863629 S-element 5 1787 2.0 1.0 1.5 2.0 1804 chr3L 19861825 5` UTR CR45433 + chr3L 19862727 intergenic not near genes chr3L 19863629 intergenic not near genes chr3L_5_19860001 chr3L_19860001 RAL-91 698 chr3L 20143080 20143116 chr3L 20143160 20143196 9 80 2.0 1.0 1.5 3.6 116 chr3L 20143080 intergenic not near genes chr3L 20143138 intergenic not near genes chr3L 20143196 intergenic not near genes chr3L_9_20140001 chr3L_20140001 RAL-91 699 chr3L 20148282 20148316 chr3L 20148372 20148405 12 88 4.0 1.5 2.8 3.2 123 chr3L 20148282 intergenic not near genes chr3L 20148344 intergenic not near genes chr3L 20148405 intergenic not near genes chr3L_12_20145001 chr3L_20145001 RAL-91 700 chr3L 20257332 20257360 chr3L 20258452 20258480 pogo 10 1120 2.0 1.5 1.8 3.6 1148 chr3L 20257332 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258480 intron rdgC + chr3L_10_20255001 chr3L_20255001 RAL-91 701 chr3L 20386946 20386972 chr3L 20387048 20387074 4 100 1.0 1.0 1.0 2.0 128 chr3L 20386946 intron fbl + chr3L 20387010 intron fbl + chr3L 20387074 intron fbl + chr3L_4_20385001 chr3L_20385001 RAL-91 702 chr3L 20419756 20419794 chr3L 20419848 20419877 7 90 1.5 4.0 2.8 1.8 121 chr3L 20419756 exon zye + chr3L 20419816 exon zye + chr3L 20419877 exon zye + chr3L_7_20415001 chr3L_20415001 RAL-91 703 chr3L 20476755 20476780 chr3L 20484354 20484379 springer 5 7599 1.0 1.5 1.2 2.3 7624 chr3L 20476755 3` UTR isoQC + chr3L 20480567 intergenic not near genes chr3L 20484379 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-91 704 chr3L 20724300 20724336 chr3L 20724439 20724474 7 138 2.0 1.0 1.5 2.8 174 chr3L 20724300 intergenic not near genes chr3L 20724387 intergenic not near genes chr3L 20724474 intergenic not near genes chr3L_7_20720001 chr3L_20720001 RAL-91 705 chr3L 20883771 20883798 chr3L 20883899 20883926 6 126 1.5 0.5 1.0 3.0 155 chr3L 20883771 intron CG32432 - chr3L 20883848 intron CG32432 - chr3L 20883926 intron CG32432 - chr3L_6_20880001 chr3L_20880001 RAL-91 706 chr3L 20917092 20917122 chr3L 20917168 20917199 7 77 0.5 1.5 1.0 3.5 107 chr3L 20917092 intergenic not near genes chr3L 20917146 intergenic not near genes chr3L 20917199 intergenic not near genes chr3L_7_20915001 chr3L_20915001 RAL-91 707 chr3L 21014917 21014947 chr3L 21023397 21023426 Tirant 10 8475 3.5 4.5 4.0 2.0 8509 chr3L 21014917 intron skd - chr3L 21019172 intron skd - chr3L 21023426 intron skd - chr3L_10_21015001 chr3L_21015001 RAL-91 708 chr3L 21151868 21151893 chr3L 21156952 21156977 flea 5 5084 4.0 1.0 2.5 1.4 5109 chr3L 21151868 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156977 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-91 709 chr3L 21243750 21243768 chr3L 21251311 21251331 412 5 7563 3.5 7.0 5.2 0.8 7581 chr3L 21243750 intron Eip78C + chr3L 21247540 intron Eip78C + chr3L 21251331 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-91 710 chr3L 21415450 21415473 chr3L 21415529 21415552 5 79 1.0 1.0 1.0 2.5 102 chr3L 21415450 intron rgn + chr3L 21415501 intron rgn + chr3L 21415552 intron rgn + chr3L_5_21415001 chr3L_21415001 RAL-91 711 chr3L 21498832 21498870 chr3L 21500468 21500491 1360 10 1634 3.5 4.5 4.0 2.0 1659 chr3L 21498832 intron Glg1 - chr3L 21499662 intron Glg1 - chr3L 21500491 intron Glg1 - chr3L_10_21495001 chr3L_21495001 RAL-91 712 chr3L 21689433 21689469 chr3L 21689516 21689549 6 79 1.5 2.5 2.0 2.0 116 chr3L 21689433 intergenic not near genes chr3L 21689491 intergenic not near genes chr3L 21689549 intergenic not near genes chr3L_6_21685001 chr3L_21685001 RAL-91 713 chr3L 21742505 21742529 chr3L 21742609 21742632 8 104 4.0 6.0 5.0 1.3 127 chr3L 21742505 intergenic CG14572 + chr3L 21742568 intergenic CG14572 + chr3L 21742632 intergenic CG14572 + chr3L_8_21740001 chr3L_21740001 RAL-91 714 chr3L 21749331 21749341 chr3L 21754480 21754501 Doc 6 5158 6.5 3.0 4.8 1.0 5170 chr3L 21749331 intron Syn1 - chr3L 21751916 intron Syn1 - chr3L 21754501 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-91 715 chr3L 21769615 21769634 chr3L 21769688 21769711 5 76 2.0 2.5 2.2 1.6 96 chr3L 21769615 intron,intron Syn1 -,CG42689 + chr3L 21769663 intron,intron Syn1 -,CG42689 + chr3L 21769711 intron,intron Syn1 -,CG42689 + chr3L_5_21765001 chr3L_21765001 RAL-91 716 chr3L 22016371 22016391 chr3L 22016483 22016504 7 113 1.0 3.0 2.0 2.3 133 chr3L 22016371 intergenic not near genes chr3L 22016438 intergenic not near genes chr3L 22016504 intergenic not near genes chr3L_7_22015001 chr3L_22015001 RAL-91 717 chr3L 22046182 22046216 chr3L 22046285 22046319 7 102 1.0 1.5 1.2 3.2 137 chr3L 22046182 intron Oct-TyrR + chr3L 22046250 intron Oct-TyrR + chr3L 22046319 intron Oct-TyrR + chr3L_7_22045001 chr3L_22045001 RAL-91 718 chr3L 22124811 22124841 chr3L 22124893 22124924 6 82 2.5 1.0 1.8 2.1 113 chr3L 22124811 intergenic not near genes chr3L 22124868 intergenic not near genes chr3L 22124924 intergenic not near genes chr3L_6_22120001 chr3L_22120001 RAL-91 719 chr3L 22169467 22169489 chr3L 22169560 22169582 8 93 0.0 3.0 1.5 3.2 115 chr3L 22169467 intron olf413 + chr3L 22169524 intron olf413 + chr3L 22169582 intron olf413 + chr3L_8_22165001 chr3L_22165001 RAL-91 720 chr3L 22542891 22542905 chr3L 22543012 22543026 4 121 0.5 1.5 1.0 2.0 135 chr3L 22542891 intergenic not near genes chr3L 22542958 intergenic not near genes chr3L 22543026 intergenic not near genes chr3L_4_22540001 chr3L_22540001 RAL-91 721 chr3L 22554423 22554450 chr3L 22554499 22554526 11 76 4.5 2.5 3.5 2.4 103 chr3L 22554423 intergenic not near genes chr3L 22554474 intergenic not near genes chr3L 22554526 intergenic not near genes chr3L_11_22550001 chr3L_22550001 RAL-91 722 chr3L 22555791 22555803 chr3L 22563238 22563273 blood 5 7447 1.5 1.5 1.5 2.0 7482 chr3L 22555791 intergenic not near genes chr3L 22559532 intergenic not near genes chr3L 22563273 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-91 723 chr3L 22569575 22569604 chr3L 22569673 22569702 12 97 3.5 1.5 2.5 3.4 127 chr3L 22569575 intergenic not near genes chr3L 22569638 intergenic not near genes chr3L 22569702 intergenic not near genes chr3L_12_22565001 chr3L_22565001 RAL-91 724 chr3L 22570425 22570458 chr3L 22570569 22570602 10 144 2.0 3.5 2.8 2.6 177 chr3L 22570425 intergenic not near genes chr3L 22570514 intergenic not near genes chr3L 22570602 intergenic not near genes chr3L_10_22570001 chr3L_22570001 RAL-91 725 chr3L 22572103 22572126 chr3L 22572170 22572206 5 68 6.5 1.0 3.8 1.0 103 chr3L 22572103 intergenic not near genes chr3L 22572154 intergenic not near genes chr3L 22572206 intergenic not near genes chr3L_5_22570001 chr3L_22570001 RAL-91 726 chr3L 22577624 22577649 chr3L 22582412 22582437 Doc 13 4788 3.5 4.0 3.8 2.7 4813 chr3L 22577624 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_13_22580001 chr3L_22580001 RAL-91 727 chr3L 22610588 22610617 chr3L 22610684 22610710 6 92 6.0 4.5 5.2 1.0 122 chr3L 22610588 intron CG14459 - chr3L 22610649 intron CG14459 - chr3L 22610710 intron CG14459 - chr3L_6_22610001 chr3L_22610001 RAL-91 728 chr3L 22617196 22617203 chr3L 22624640 22624655 blood 5 7449 4.0 3.0 3.5 1.1 7459 chr3L 22617196 intron CG14459 - chr3L 22620926 intron CG14459 - chr3L 22624655 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-91 729 chr3L 22703017 22703028 chr3L 22703121 22703129 6 104 5.0 6.0 5.5 0.9 112 chr3L 22703017 intergenic not near genes chr3L 22703073 intergenic not near genes chr3L 22703129 intergenic not near genes chr3L_6_22700001 chr3L_22700001 RAL-91 730 chr3L 22726425 22726450 chr3L 22726511 22726536 7 86 2.5 2.0 2.2 2.2 111 chr3L 22726425 3` UTR CG14450 - chr3L 22726480 3` UTR CG14450 - chr3L 22726536 3` UTR CG14450 - chr3L_7_22725001 chr3L_22725001 RAL-91 731 chr3L 22865986 22866014 chr3L 22867119 22867147 Doc 5 1133 3.0 1.5 2.2 1.6 1161 chr3L 22865986 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867147 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-91 732 chr3L 19220633 19220637 chr3L 22908066 22908066 9 3687432 8.0 8.5 8.2 1.0 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_9_21060001 chr3L_21060001 RAL-91 733 chr3L 19220633 19220637 chr3L 22908067 22908067 8 3687432 8.0 8.5 8.2 0.9 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_8_21060001 chr3L_21060001 RAL-91 734 chr3L 22909031 22909053 chr3L 22909121 22909143 6 90 1.5 3.5 2.5 1.7 112 chr3L 22909031 intergenic CR45661 + chr3L 22909087 intergenic CR45661 + chr3L 22909143 intergenic CR45661 + chr3L_6_22905001 chr3L_22905001 RAL-91 735 chr3L 22962451 22962475 chr3L 22963772 22963796 INE-1 10 1321 2.5 0.5 1.5 4.0 1345 chr3L 22962451 intergenic not near genes chr3L 22963124 intergenic not near genes chr3L 22963796 intergenic not near genes chr3L_10_22960001 chr3L_22960001 RAL-91 736 chr3L 23182816 23182845 chr3L 23182892 23182919 6 75 2.0 0.0 1.0 3.0 103 chr3L 23182816 intron CG34031 + chr3L 23182868 intron CG34031 + chr3L 23182919 intron CG34031 + chr3L_6_23180001 chr3L_23180001 RAL-91 737 chr3L 27390698 27390706 chr3L 27390774 27390785 5 78 10.5 13.5 12.0 0.4 87 chr3L 27390698 intron Dbp80 + chr3L 27390742 intron Dbp80 + chr3L 27390785 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-91 738 chr3R 2534157 2534160 chr3R 2541701 2541727 5 7560 9.5 9.0 9.2 0.5 7570 chr3R 2534157 intergenic not near genes chr3R 2537942 intergenic not near genes chr3R 2541727 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-91 739 chr3R 4105041 4105068 chr3R 4110245 4110262 copia 4 5202 0.5 0.0 0.2 3.3 5221 chr3R 4105041 intergenic not near genes chr3R 4107652 intergenic not near genes chr3R 4110262 intergenic not near genes chr3R_4_4105001 chr3R_4105001 RAL-91 740 chr3R 4408418 4408439 chr3R 4412721 4412743 Juan 7 4304 0.5 2.0 1.2 3.2 4325 chr3R 4408418 intron CG32944 - chr3R 4410580 intron CG32944 - chr3R 4412743 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-91 741 chr3R 4769166 4769187 chr3R 4769244 4769263 6 77 3.5 4.5 4.0 1.2 97 chr3R 4769166 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769263 intron,intron atms +,CG44098 - chr3R_6_4765001 chr3R_4765001 RAL-91 742 chr3R 4887477 4887505 chr3R 4894854 4894882 rover 8 7377 3.0 1.5 2.2 2.5 7405 chr3R 4887477 intergenic not near genes chr3R 4891180 intergenic not near genes chr3R 4894882 intergenic not near genes chr3R_8_4890001 chr3R_4890001 RAL-91 743 chr3R 4904879 4904888 chr3R 18214684 18214693 6 13309805 6.5 10.5 8.5 0.6 13309814 chr3R 4904879 intergenic not near genes chr3R 11559786 3` UTR CG10898 + chr3R 18214693 3` UTR CG7985 + chr3R_6_11555001 chr3R_11555001 RAL-91 744 chr3R 4975947 4975961 chr3R 4976048 4976062 5 101 2.0 0.5 1.2 2.3 115 chr3R 4975947 intergenic not near genes chr3R 4976004 intergenic not near genes chr3R 4976062 intergenic not near genes chr3R_5_4975001 chr3R_4975001 RAL-91 745 chr3R 5067984 5067993 chr3R 5073501 5073510 mdg3 4 5517 1.5 2.0 1.8 1.4 5526 chr3R 5067984 intergenic not near genes chr3R 5070747 intergenic not near genes chr3R 5073510 intergenic not near genes chr3R_4_5070001 chr3R_5070001 RAL-91 746 chr3R 5112745 5112769 chr3R 5112837 5112840 6 86 3.5 3.0 3.2 1.4 95 chr3R 5112745 intergenic not near genes chr3R 5112792 intergenic not near genes chr3R 5112840 intergenic not near genes chr3R_6_5110001 chr3R_5110001 RAL-91 747 chr3R 5278094 5278122 chr3R 5278175 5278203 13 80 2.5 3.5 3.0 3.2 109 chr3R 5278094 intron mtd - chr3R 5278148 intron mtd - chr3R 5278203 intron mtd - chr3R_13_5275001 chr3R_5275001 RAL-91 748 chr3R 5338399 5338429 chr3R 5343575 5343606 Rt1c 6 5176 2.0 7.0 4.5 1.1 5207 chr3R 5338399 intron mtd - chr3R 5341002 intron mtd - chr3R 5343606 intron mtd - chr3R_6_5340001 chr3R_5340001 RAL-91 749 chr3R 5385984 5386004 chr3R 5386144 5386175 9 167 4.5 4.0 4.2 1.7 191 chr3R 5385984 intron kkv - chr3R 5386080 intron kkv - chr3R 5386175 intron kkv - chr3R_9_5385001 chr3R_5385001 RAL-91 750 chr3R 5627148 5627177 chr3R 5627558 5627588 9 410 3.0 3.5 3.2 2.1 440 chr3R 5627148 intergenic not near genes chr3R 5627368 intergenic CG31551 + chr3R 5627588 intergenic CG31551 + chr3R_9_5625001 chr3R_5625001 RAL-91 751 chr3R 5746014 5746040 chr3R 5746255 5746279 pogo 11 240 3.0 3.0 3.0 2.8 265 chr3R 5746014 3` UTR Madm + chr3R 5746146 3` UTR Madm + chr3R 5746279 3` UTR Madm + chr3R_11_5745001 chr3R_5745001 RAL-91 752 chr3R 5769233 5769265 chr3R 5769330 5769363 6 96 3.0 4.5 3.8 1.2 130 chr3R 5769233 intron CG2082 - chr3R 5769298 intron CG2082 - chr3R 5769363 intron CG2082 - chr3R_6_5765001 chr3R_5765001 RAL-91 753 chr3R 5772379 5772400 chr3R 5772537 5772556 5 158 2.5 1.0 1.8 1.8 177 chr3R 5772379 intron CG2082 - chr3R 5772468 intron CG2082 - chr3R 5772556 intron CG2082 - chr3R_5_5770001 chr3R_5770001 RAL-91 754 chr3R 5809117 5809142 chr3R 5809356 5809383 pogo 9 240 6.5 2.5 4.5 1.6 266 chr3R 5809117 3` UTR CG11000 + chr3R 5809250 3` UTR CG11000 + chr3R 5809383 3` UTR CG11000 + chr3R_9_5805001 chr3R_5805001 RAL-91 755 chr3R 5822378 5822413 chr3R 5823545 5823578 1360 10 1167 1.0 3.5 2.2 3.1 1200 chr3R 5822378 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823578 3` UTR CG2023 - chr3R_10_5820001 chr3R_5820001 RAL-91 756 chr3R 5896977 5896996 chr3R 5897335 5897354 5 359 2.0 3.0 2.5 1.4 377 chr3R 5896977 intron CG34113 - chr3R 5897166 intron CG34113 - chr3R 5897354 intron CG34113 - chr3R_5_5895001 chr3R_5895001 RAL-91 757 chr3R 5927563 5927592 chr3R 5927803 5927831 pogo 7 237 4.5 1.5 3.0 1.8 268 chr3R 5927563 intron CG34113 - chr3R 5927697 intron CG34113 - chr3R 5927831 intron CG34113 - chr3R_7_5925001 chr3R_5925001 RAL-91 758 chr3R 5989336 5989364 chr3R 5989419 5989447 8 83 1.0 3.0 2.0 2.7 111 chr3R 5989336 5` UTR CR44927 + chr3R 5989392 5` UTR CR44927 + chr3R 5989447 5` UTR CR44927 + chr3R_8_5985001 chr3R_5985001 RAL-91 759 chr3R 6015974 6015994 chr3R 6024450 6024474 Tirant 4 8480 1.0 2.5 1.8 1.4 8500 chr3R 6015974 intergenic not near genes chr3R 6020224 intergenic not near genes chr3R 6024474 intergenic not near genes chr3R_4_6020001 chr3R_6020001 RAL-91 760 chr3R 6048448 6048478 chr3R 6048531 6048561 11 83 3.5 3.5 3.5 2.4 113 chr3R 6048448 intergenic not near genes chr3R 6048504 intergenic not near genes chr3R 6048561 intergenic not near genes chr3R_11_6045001 chr3R_6045001 RAL-91 761 chr3R 6123690 6123699 chr3R 6127391 6127400 4 3701 0.5 2.0 1.2 1.8 3710 chr3R 6123690 3` UTR Vha14-2 + chr3R 6125545 intergenic not near genes chr3R 6127400 3` UTR CR43487 - chr3R_4_6125001 chr3R_6125001 RAL-91 762 chr3R 6158071 6158107 chr3R 6158285 6158321 5 214 2.0 2.0 2.0 1.7 250 chr3R 6158071 intergenic not near genes chr3R 6158196 intergenic not near genes chr3R 6158321 intergenic not near genes chr3R_5_6155001 chr3R_6155001 RAL-91 763 chr3R 6158507 6158532 chr3R 6167090 6167115 Tirant 9 8581 7.5 3.5 5.5 1.4 8608 chr3R 6158507 intergenic not near genes chr3R 6162811 intergenic not near genes chr3R 6167115 intergenic CG1077 + chr3R_9_6160001 chr3R_6160001 RAL-91 764 chr3R 6174272 6174302 chr3R 6174411 6174442 12 139 4.5 4.0 4.2 2.3 170 chr3R 6174272 exon Osi1 + chr3R 6174357 exon Osi1 + chr3R 6174442 exon Osi1 + chr3R_12_6170001 chr3R_6170001 RAL-91 765 chr3R 6175175 6175205 chr3R 6182447 6182467 HMS-Beagle2 4 7268 4.0 0.5 2.2 1.2 7292 chr3R 6175175 intergenic Osi1 + chr3R 6178821 intron CR45194 + chr3R 6182467 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-91 766 chr3R 6186533 6186552 chr3R 6186601 6186634 8 76 0.5 3.5 2.0 2.7 101 chr3R 6186533 intergenic not near genes chr3R 6186584 intergenic not near genes chr3R 6186634 intergenic not near genes chr3R_8_6185001 chr3R_6185001 RAL-91 767 chr3R 6191175 6191200 chr3R 6191254 6191280 7 78 3.5 1.0 2.2 2.2 105 chr3R 6191175 intron NPFR + chr3R 6191228 intron NPFR + chr3R 6191280 intron NPFR + chr3R_7_6190001 chr3R_6190001 RAL-91 768 chr3R 6206279 6206319 chr3R 6206496 6206536 BS 9 217 2.0 3.0 2.5 2.6 257 chr3R 6206279 exon Osi24 + chr3R 6206408 intron Osi24 + chr3R 6206536 intron Osi24 + chr3R_9_6205001 chr3R_6205001 RAL-91 769 chr3R 6282815 6282837 chr3R 6282943 6282966 10 128 2.0 1.5 1.8 3.6 151 chr3R 6282815 intergenic Osi12 + chr3R 6282890 intergenic Osi12 + chr3R 6282966 intergenic Osi12 + chr3R_10_6280001 chr3R_6280001 RAL-91 770 chr3R 6523325 6523350 chr3R 6523701 6523719 7 373 0.0 1.5 0.8 3.9 394 chr3R 6523325 intergenic not near genes chr3R 6523522 intergenic not near genes chr3R 6523719 intergenic not near genes chr3R_7_6520001 chr3R_6520001 RAL-91 771 chr3R 6737506 6737530 chr3R 6739292 6739317 Doc 6 1784 2.0 3.5 2.8 1.6 1811 chr3R 6737506 intron pb - chr3R 6738412 intron pb - chr3R 6739317 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-91 772 chr3R 6918068 6918083 chr3R 6918146 6918161 5 77 1.0 2.5 1.8 1.8 93 chr3R 6918068 intron Antp - chr3R 6918114 intron Antp - chr3R 6918161 intron Antp - chr3R_5_6915001 chr3R_6915001 RAL-91 773 chr3R 7026857 7026887 chr3R 7026942 7026969 5 83 1.5 1.0 1.2 2.3 112 chr3R 7026857 intergenic not near genes chr3R 7026913 intergenic not near genes chr3R 7026969 intergenic not near genes chr3R_5_7025001 chr3R_7025001 RAL-91 774 chr3R 7092784 7092817 chr3R 7093348 7093376 8 563 0.0 3.5 1.8 2.9 592 chr3R 7092784 3` UTR CR43685 - chr3R 7093080 intron CR43685 - chr3R 7093376 3` UTR CR43685 - chr3R_8_7090001 chr3R_7090001 RAL-91 775 chr3R 7103295 7103315 chr3R 7103362 7103391 7 73 2.5 3.5 3.0 1.8 96 chr3R 7103295 intron Alh - chr3R 7103343 intron Alh - chr3R 7103391 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-91 776 chr3R 7447990 7448012 chr3R 7448068 7448090 8 78 4.0 0.5 2.2 2.5 100 chr3R 7447990 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448090 intergenic not near genes chr3R_8_7445001 chr3R_7445001 RAL-91 777 chr3R 7511767 7511797 chr3R 7511848 7511877 6 81 2.0 2.5 2.2 1.9 110 chr3R 7511767 intron alpha-Est8 - chr3R 7511822 intron alpha-Est8 - chr3R 7511877 intron alpha-Est8 - chr3R_6_7510001 chr3R_7510001 RAL-91 778 chr3R 7621552 7621561 chr3R 7621642 7621651 4 90 0.0 2.5 1.2 1.8 99 chr3R 7621552 intron CG34127 - chr3R 7621602 intron CG34127 - chr3R 7621651 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-91 779 chr3R 7677914 7677947 chr3R 7678027 7678048 10 111 0.5 1.5 1.0 5.0 134 chr3R 7677914 intron Nlg1 + chr3R 7677981 intron Nlg1 + chr3R 7678048 intron Nlg1 + chr3R_10_7675001 chr3R_7675001 RAL-91 780 chr3R 7729464 7729497 chr3R 7737402 7737434 Stalker2 9 7937 0.5 1.0 0.8 5.0 7970 chr3R 7729464 intergenic not near genes chr3R 7733449 intergenic not near genes chr3R 7737434 intergenic not near genes chr3R_9_7730001 chr3R_7730001 RAL-91 781 chr3R 7955940 7955967 chr3R 7956012 7956044 9 75 2.5 2.0 2.2 2.8 104 chr3R 7955940 intron dsx - chr3R 7955992 intron dsx - chr3R 7956044 intron dsx - chr3R_9_7955001 chr3R_7955001 RAL-91 782 chr3R 8207563 8207588 chr3R 8208408 8208433 F-element 4 844 1.0 3.5 2.2 1.2 870 chr3R 8207563 intergenic not near genes chr3R 8207998 intergenic not near genes chr3R 8208433 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-91 783 chr3R 8273736 8273765 chr3R 8273823 8273852 5 87 0.5 1.5 1.0 2.5 116 chr3R 8273736 intergenic not near genes chr3R 8273794 intergenic not near genes chr3R 8273852 intergenic not near genes chr3R_5_8270001 chr3R_8270001 RAL-91 784 chr3R 8339241 8339247 chr3R 21907534 21907536 32 13568289 13.5 12.0 12.8 2.3 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_32_15120001 chr3R_15120001 RAL-91 785 chr3R 8403012 8403036 chr3R 8412178 8412202 roo 15 9163 4.5 7.0 5.8 2.2 9190 chr3R 8403012 intron CG45263 - chr3R 8407607 intron CG45263 - chr3R 8412202 intron CG45263 - chr3R_15_8405001 chr3R_8405001 RAL-91 786 chr3R 8570479 8570511 chr3R 8575115 8575146 HMS-Beagle 11 4634 1.0 0.5 0.8 6.1 4667 chr3R 8570479 intergenic not near genes chr3R 8572812 intergenic not near genes chr3R 8575146 intergenic not near genes chr3R_11_8570001 chr3R_8570001 RAL-91 787 chr3R 8707356 8707385 chr3R 8709795 8709826 jockey 8 2441 2.5 6.5 4.5 1.5 2470 chr3R 8707356 intergenic not near genes chr3R 8708591 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_8_8705001 chr3R_8705001 RAL-91 788 chr3R 9082046 9082066 chr3R 9082138 9082160 6 90 2.5 1.5 2.0 2.0 114 chr3R 9082046 intron pum - chr3R 9082103 intron pum - chr3R 9082160 intron pum - chr3R_6_9080001 chr3R_9080001 RAL-91 789 chr3R 9083107 9083134 chr3R 9083491 9083518 9 383 3.0 3.0 3.0 2.2 411 chr3R 9083107 intron pum - chr3R 9083312 intron pum - chr3R 9083518 intron pum - chr3R_9_9080001 chr3R_9080001 RAL-91 790 chr3R 9087320 9087347 chr3R 9087397 9087426 7 79 2.0 1.5 1.8 2.5 106 chr3R 9087320 intron pum - chr3R 9087373 intron pum - chr3R 9087426 intron pum - chr3R_7_9085001 chr3R_9085001 RAL-91 791 chr3R 9141168 9141185 chr3R 9141257 9141274 5 89 0.5 1.5 1.0 2.5 106 chr3R 9141168 intron pum - chr3R 9141221 intron pum - chr3R 9141274 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-91 792 chr3R 9382822 9382849 chr3R 9382947 9382974 4 125 1.5 1.5 1.5 1.6 152 chr3R 9382822 intron FER - chr3R 9382898 intron FER - chr3R 9382974 intron FER - chr3R_4_9380001 chr3R_9380001 RAL-91 793 chr3R 9620956 9620956 chr3R 21907534 21907536 10 12286580 10.5 12.0 11.2 0.8 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_10_15760001 chr3R_15760001 RAL-91 794 chr3R 9644588 9644609 chr3R 9644669 9644690 4 80 0.5 2.0 1.2 1.8 102 chr3R 9644588 intron Dh44 + chr3R 9644639 intron Dh44 + chr3R 9644690 intron Dh44 + chr3R_4_9640001 chr3R_9640001 RAL-91 795 chr3R 9824511 9824531 chr3R 9824757 9824778 16 246 1.5 3.0 2.2 5.0 267 chr3R 9824511 3` UTR CR42858 - chr3R 9824644 3` UTR CR42858 - chr3R 9824778 intron CR42858 - chr3R_16_9820001 chr3R_9820001 RAL-91 796 chr3R 9853201 9853207 chr3R 9853287 9853316 4 103 2.0 2.5 2.2 1.2 115 chr3R 9853201 intron Teh1 - chr3R 9853258 intron Teh1 - chr3R 9853316 intron Teh1 - chr3R_4_9850001 chr3R_9850001 RAL-91 797 chr3R 9936873 9936909 chr3R 9936949 9936984 17 74 2.5 5.0 3.8 3.5 111 chr3R 9936873 intron Glut4EF + chr3R 9936928 intron Glut4EF + chr3R 9936984 intron Glut4EF + chr3R_17_9935001 chr3R_9935001 RAL-91 798 chr3R 9942550 9942557 chr3R 9942864 9942871 4 314 1.0 3.5 2.2 1.2 321 chr3R 9942550 intron Glut4EF + chr3R 9942710 intron Glut4EF + chr3R 9942871 intron Glut4EF + chr3R_4_9940001 chr3R_9940001 RAL-91 799 chr3R 10147449 10147465 chr3R 10147641 10147663 4 194 1.0 1.5 1.2 1.8 214 chr3R 10147449 intron Invadolysin + chr3R 10147556 intron Invadolysin + chr3R 10147663 intron Invadolysin + chr3R_4_10145001 chr3R_10145001 RAL-91 800 chr3R 10289067 10289090 chr3R 10289194 10289210 12 126 0.0 2.5 1.2 5.5 143 chr3R 10289067 intron CG43143 + chr3R 10289138 intron CG43143 + chr3R 10289210 intron CG43143 + chr3R_12_10285001 chr3R_10285001 RAL-91 801 chr3R 10428580 10428609 chr3R 10428771 10428816 4 196 2.0 0.0 1.0 2.0 236 chr3R 10428580 intergenic not near genes chr3R 10428698 intergenic not near genes chr3R 10428816 intergenic not near genes chr3R_4_10425001 chr3R_10425001 RAL-91 802 chr3R 10531872 10531899 chr3R 10531953 10531979 6 78 1.5 1.0 1.2 2.7 107 chr3R 10531872 intron hth - chr3R 10531926 intron hth - chr3R 10531979 intron hth - chr3R_6_10530001 chr3R_10530001 RAL-91 803 chr3R 10727641 10727670 chr3R 10727721 10727750 6 79 1.5 1.0 1.2 2.7 109 chr3R 10727641 intergenic not near genes chr3R 10727696 intergenic not near genes chr3R 10727750 intergenic not near genes chr3R_6_10725001 chr3R_10725001 RAL-91 804 chr3R 10737567 10737601 chr3R 10737933 10737967 5 366 0.5 1.0 0.8 2.8 400 chr3R 10737567 intergenic TkR86C - chr3R 10737767 3` UTR TkR86C - chr3R 10737967 3` UTR TkR86C - chr3R_5_10735001 chr3R_10735001 RAL-91 805 chr3R 10752723 10752744 chr3R 10752808 10752828 6 84 1.0 3.0 2.0 2.0 105 chr3R 10752723 intergenic not near genes chr3R 10752776 intergenic not near genes chr3R 10752828 intergenic not near genes chr3R_6_10750001 chr3R_10750001 RAL-91 806 chr3R 10919685 10919716 chr3R 10919763 10919793 6 78 1.5 1.0 1.2 2.7 108 chr3R 10919685 intergenic not near genes chr3R 10919739 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-91 807 chr3R 10933848 10933866 chr3R 10933922 10933949 5 81 1.5 1.5 1.5 2.0 101 chr3R 10933848 intergenic not near genes chr3R 10933898 intergenic not near genes chr3R 10933949 intergenic not near genes chr3R_5_10930001 chr3R_10930001 RAL-91 808 chr3R 10935747 10935777 chr3R 10935829 10935859 4 82 0.5 2.5 1.5 1.6 112 chr3R 10935747 intergenic not near genes chr3R 10935803 intergenic not near genes chr3R 10935859 intergenic not near genes chr3R_4_10935001 chr3R_10935001 RAL-91 809 chr3R 10949035 10949054 chr3R 10949124 10949143 5 89 1.5 1.0 1.2 2.3 108 chr3R 10949035 intergenic not near genes chr3R 10949089 intergenic not near genes chr3R 10949143 intergenic not near genes chr3R_5_10945001 chr3R_10945001 RAL-91 810 chr3R 11102323 11102343 chr3R 11102404 11102420 7 79 5.0 3.0 4.0 1.4 97 chr3R 11102323 intergenic not near genes chr3R 11102372 intergenic not near genes chr3R 11102420 intergenic not near genes chr3R_7_11100001 chr3R_11100001 RAL-91 811 chr3R 11183078 11183098 chr3R 11183323 11183343 9 243 2.5 3.5 3.0 2.2 265 chr3R 11183078 intergenic not near genes chr3R 11183210 intergenic not near genes chr3R 11183343 intergenic not near genes chr3R_9_11180001 chr3R_11180001 RAL-91 812 chr3R 11379236 11379268 chr3R 11388391 11388421 roo 6 9155 1.5 2.5 2.0 2.0 9185 chr3R 11379236 intron pros + chr3R 11383828 intron pros + chr3R 11388421 intron pros + chr3R_6_11380001 chr3R_11380001 RAL-91 813 chr3R 11470494 11470517 chr3R 11470820 11470843 4 326 2.0 3.0 2.5 1.1 349 chr3R 11470494 intergenic not near genes chr3R 11470668 intergenic not near genes chr3R 11470843 intergenic not near genes chr3R_4_11470001 chr3R_11470001 RAL-91 814 chr3R 11612732 11612737 chr3R 11612812 11612817 5 79 1.5 5.0 3.2 1.2 85 chr3R 11612732 intron Jupiter - chr3R 11612774 intron Jupiter - chr3R 11612817 intron Jupiter - chr3R_5_11610001 chr3R_11610001 RAL-91 815 chr3R 11670986 11671008 chr3R 11671064 11671086 9 77 3.5 0.5 2.0 3.0 100 chr3R 11670986 intron CG42327 + chr3R 11671036 intron CG42327 + chr3R 11671086 intron CG42327 + chr3R_9_11670001 chr3R_11670001 RAL-91 816 chr3R 11673604 11673614 chr3R 11673687 11673697 4 83 6.0 2.5 4.2 0.8 93 chr3R 11673604 3` UTR CG42327 + chr3R 11673650 3` UTR CG42327 + chr3R 11673697 3` UTR CG42327 + chr3R_4_11670001 chr3R_11670001 RAL-91 817 chr3R 11689722 11689754 chr3R 11689804 11689835 5 79 0.5 1.0 0.8 2.8 113 chr3R 11689722 intron CG6908 - chr3R 11689778 exon CG6908 - chr3R 11689835 exon CG6908 - chr3R_5_11685001 chr3R_11685001 RAL-91 818 chr3R 11710204 11710237 chr3R 11710282 11710315 11 77 2.5 1.5 2.0 3.7 111 chr3R 11710204 intergenic not near genes chr3R 11710260 intergenic not near genes chr3R 11710315 intergenic not near genes chr3R_11_11710001 chr3R_11710001 RAL-91 819 chr3R 11734178 11734188 chr3R 11734282 11734306 4 115 3.0 2.0 2.5 1.1 128 chr3R 11734178 intergenic not near genes chr3R 11734242 intergenic not near genes chr3R 11734306 intergenic not near genes chr3R_4_11730001 chr3R_11730001 RAL-91 820 chr3R 11869940 11869970 chr3R 11870019 11870049 7 79 3.0 1.0 2.0 2.3 109 chr3R 11869940 intergenic CG6959 - chr3R 11869994 intergenic not near genes chr3R 11870049 intergenic not near genes chr3R_7_11865001 chr3R_11865001 RAL-91 821 chr3R 11909377 11909391 chr3R 11909442 11909453 5 69 3.5 2.5 3.0 1.2 76 chr3R 11909377 intron Cad87A - chr3R 11909415 intron Cad87A - chr3R 11909453 intron Cad87A - chr3R_5_11905001 chr3R_11905001 RAL-91 822 chr3R 12022883 12022907 chr3R 12025060 12025084 pogo 7 2177 2.0 2.0 2.0 2.3 2201 chr3R 12022883 intergenic not near genes chr3R 12023984 intergenic not near genes chr3R 12025084 intergenic not near genes chr3R_7_12020001 chr3R_12020001 RAL-91 823 chr3R 12081999 12082030 chr3R 12082075 12082106 12 76 2.5 1.5 2.0 4.0 107 chr3R 12081999 intron CG14741 - chr3R 12082052 intron CG14741 - chr3R 12082106 intron CG14741 - chr3R_12_12080001 chr3R_12080001 RAL-91 824 chr3R 12111892 12111920 chr3R 12111968 12111996 7 76 1.0 1.0 1.0 3.5 104 chr3R 12111892 intergenic dpr17 + chr3R 12111944 intergenic not near genes chr3R 12111996 intergenic not near genes chr3R_7_12110001 chr3R_12110001 RAL-91 825 chr3R 12202304 12202320 chr3R 12202413 12202428 6 108 0.0 5.0 2.5 1.7 124 chr3R 12202304 intergenic not near genes chr3R 12202366 intergenic not near genes chr3R 12202428 intergenic not near genes chr3R_6_12200001 chr3R_12200001 RAL-91 826 chr3R 12249170 12249180 chr3R 12249265 12249275 4 95 1.0 2.5 1.8 1.4 105 chr3R 12249170 intergenic not near genes chr3R 12249222 intergenic not near genes chr3R 12249275 intergenic not near genes chr3R_4_12245001 chr3R_12245001 RAL-91 827 chr3R 12277923 12277955 chr3R 12278019 12278051 8 96 1.5 2.0 1.8 2.9 128 chr3R 12277923 intron svp + chr3R 12277987 intron svp + chr3R 12278051 intron svp + chr3R_8_12275001 chr3R_12275001 RAL-91 828 chr3R 12348657 12348674 chr3R 12348762 12348779 7 104 2.5 2.0 2.2 2.2 122 chr3R 12348657 intergenic CG10038 - chr3R 12348718 intergenic CG10038 - chr3R 12348779 intergenic CG10038 - chr3R_7_12345001 chr3R_12345001 RAL-91 829 chr3R 12522351 12522386 chr3R 12522437 12522469 10 81 6.0 4.5 5.2 1.6 118 chr3R 12522351 5` UTR Octbeta3R - chr3R 12522410 5` UTR Octbeta3R - chr3R 12522469 5` UTR Octbeta3R - chr3R_10_12520001 chr3R_12520001 RAL-91 830 chr3R 12599004 12599022 chr3R 12599144 12599162 9 138 9.5 8.0 8.8 0.9 158 chr3R 12599004 intergenic not near genes chr3R 12599083 intergenic not near genes chr3R 12599162 intergenic not near genes chr3R_9_12595001 chr3R_12595001 RAL-91 831 chr3R 12599382 12599405 chr3R 12599461 12599488 8 81 0.0 5.5 2.8 2.1 106 chr3R 12599382 intergenic not near genes chr3R 12599435 intergenic not near genes chr3R 12599488 intergenic not near genes chr3R_8_12595001 chr3R_12595001 RAL-91 832 chr3R 12706464 12706481 chr3R 12715777 12715793 4 9314 40.0 11.0 25.5 0.2 9329 chr3R 12706464 exon mus308 - chr3R 12711128 exon mus308 - chr3R 12715793 intron Men - chr3R_4_12710001 chr3R_12710001 RAL-91 833 chr3R 12720670 12720703 chr3R 12720746 12720779 13 75 3.0 2.5 2.8 3.4 109 chr3R 12720670 intron Men - chr3R 12720724 intron Men - chr3R 12720779 intron Men - chr3R_13_12720001 chr3R_12720001 RAL-91 834 chr3R 12796478 12796505 chr3R 12796558 12796585 4 79 1.5 1.0 1.2 1.8 107 chr3R 12796478 intergenic not near genes chr3R 12796532 intergenic not near genes chr3R 12796585 intergenic not near genes chr3R_4_12795001 chr3R_12795001 RAL-91 835 chr3R 12920155 12920175 chr3R 12925356 12925378 copia 7 5203 3.0 2.5 2.8 1.8 5223 chr3R 12920155 intron beat-Vb + chr3R 12922766 intron beat-Vb + chr3R 12925378 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-91 836 chr3R 12972557 12972583 chr3R 12972696 12972722 5 139 1.5 2.0 1.8 1.8 165 chr3R 12972557 intron CG7381 - chr3R 12972640 intron CG7381 - chr3R 12972722 intron CG7381 - chr3R_5_12970001 chr3R_12970001 RAL-91 837 chr3R 13135407 13135435 chr3R 13135500 13135514 13 87 3.5 2.5 3.0 3.2 107 chr3R 13135407 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13135460 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13135514 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_13_13135001 chr3R_13135001 RAL-91 838 chr3R 13143042 13143061 chr3R 13148619 13148639 mdg3 4 5577 3.0 3.5 3.2 1.0 5597 chr3R 13143042 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148639 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-91 839 chr3R 13219320 13219352 chr3R 13219416 13219428 5 92 1.0 1.5 1.2 2.3 108 chr3R 13219320 intergenic CG8476 - chr3R 13219374 intergenic CG8476 - chr3R 13219428 intergenic CG8476 - chr3R_5_13215001 chr3R_13215001 RAL-91 840 chr3R 13234918 13234933 chr3R 13234997 13235028 8 86 1.5 1.5 1.5 3.2 110 chr3R 13234918 intron Ace - chr3R 13234973 intron Ace - chr3R 13235028 intron Ace - chr3R_8_13230001 chr3R_13230001 RAL-91 841 chr3R 13237685 13237713 chr3R 13237769 13237778 4 76 1.0 2.0 1.5 1.6 93 chr3R 13237685 intron Ace - chr3R 13237732 intron Ace - chr3R 13237778 intron Ace - chr3R_4_13235001 chr3R_13235001 RAL-91 842 chr3R 13272373 13272408 chr3R 13272574 13272608 4 201 0.5 1.0 0.8 2.2 235 chr3R 13272373 intergenic CG8449 - chr3R 13272490 intergenic CG8449 - chr3R 13272608 intergenic not near genes chr3R_4_13270001 chr3R_13270001 RAL-91 843 chr3R 13274211 13274246 chr3R 13274290 13274323 9 78 3.0 3.0 3.0 2.2 112 chr3R 13274211 intergenic not near genes chr3R 13274267 intergenic not near genes chr3R 13274323 intergenic not near genes chr3R_9_13270001 chr3R_13270001 RAL-91 844 chr3R 13294012 13294038 chr3R 13294176 13294200 5 163 0.0 1.0 0.5 3.3 188 chr3R 13294012 intergenic not near genes chr3R 13294106 intergenic not near genes chr3R 13294200 intergenic not near genes chr3R_5_13290001 chr3R_13290001 RAL-91 845 chr3R 13339065 13339089 chr3R 13339144 13339167 4 79 3.0 0.0 1.5 1.6 102 chr3R 13339065 intron PK2-R1 + chr3R 13339116 intron PK2-R1 + chr3R 13339167 intron PK2-R1 + chr3R_4_13335001 chr3R_13335001 RAL-91 846 chr3R 13379132 13379161 chr3R 13379218 13379247 10 85 2.0 4.5 3.2 2.4 115 chr3R 13379132 intron CG9813 - chr3R 13379190 intron CG9813 - chr3R 13379247 intron CG9813 - chr3R_10_13375001 chr3R_13375001 RAL-91 847 chr3R 13488092 13488118 chr3R 13488347 13488372 6 252 1.0 6.0 3.5 1.3 280 chr3R 13488092 intergenic not near genes chr3R 13488232 intergenic not near genes chr3R 13488372 intergenic not near genes chr3R_6_13485001 chr3R_13485001 RAL-91 848 chr3R 13502441 13502471 chr3R 13502545 13502571 7 104 1.0 2.5 1.8 2.5 130 chr3R 13502441 intergenic not near genes chr3R 13502506 intergenic not near genes chr3R 13502571 intergenic not near genes chr3R_7_13500001 chr3R_13500001 RAL-91 849 chr3R 13603067 13603075 chr3R 13603156 13603166 4 90 3.0 2.5 2.8 1.1 99 chr3R 13603067 intergenic not near genes chr3R 13603116 intergenic not near genes chr3R 13603166 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-91 850 chr3R 13617679 13617705 chr3R 13617786 13617812 7 107 1.0 0.5 0.8 3.9 133 chr3R 13617679 intergenic CR45680 - chr3R 13617746 intergenic CR45680 - chr3R 13617812 3` UTR CR45680 - chr3R_7_13615001 chr3R_13615001 RAL-91 851 chr3R 13672952 13672975 chr3R 13673030 13673053 4 78 0.5 2.0 1.2 1.8 101 chr3R 13672952 intron Task6 - chr3R 13673002 intron Task6 - chr3R 13673053 intron Task6 - chr3R_4_13670001 chr3R_13670001 RAL-91 852 chr3R 13693028 13693028 chr3R 21907534 21907536 41 8214507 5.0 12.0 8.5 4.3 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_41_17800001 chr3R_17800001 RAL-91 853 chr3R 13782053 13782089 chr3R 13782132 13782170 5 80 2.0 2.5 2.2 1.6 117 chr3R 13782053 exon CG9286 + chr3R 13782112 intergenic CG9286 +,Dip-B + chr3R 13782170 intergenic CG9286 +,Dip-B + chr3R_5_13780001 chr3R_13780001 RAL-91 854 chr3R 13923448 13923468 chr3R 13923524 13923542 5 76 4.5 5.0 4.8 0.9 94 chr3R 13923448 intergenic not near genes chr3R 13923495 intergenic not near genes chr3R 13923542 intergenic not near genes chr3R_5_13920001 chr3R_13920001 RAL-91 855 chr3R 13977673 13977683 chr3R 13977763 13977769 4 93 1.5 2.5 2.0 1.3 96 chr3R 13977673 intron rdx - chr3R 13977721 intron rdx - chr3R 13977769 intron rdx - chr3R_4_13975001 chr3R_13975001 RAL-91 856 chr3R 14174959 14174989 chr3R 14175046 14175075 7 86 1.5 3.0 2.2 2.2 116 chr3R 14174959 3` UTR Dop1R1 - chr3R 14175017 3` UTR Dop1R1 - chr3R 14175075 3` UTR Dop1R1 - chr3R_7_14175001 chr3R_14175001 RAL-91 857 chr3R 14364068 14364090 chr3R 14364144 14364167 4 75 1.5 3.5 2.5 1.1 99 chr3R 14364068 intron NK7.1 - chr3R 14364118 intron NK7.1 - chr3R 14364167 intron NK7.1 - chr3R_4_14360001 chr3R_14360001 RAL-91 858 chr3R 14532239 14532264 chr3R 14532551 14532577 6 310 2.5 2.0 2.2 1.9 338 chr3R 14532239 intron Pde6 - chr3R 14532408 intron Pde6 - chr3R 14532577 intron Pde6 - chr3R_6_14530001 chr3R_14530001 RAL-91 859 chr3R 14662321 14662337 chr3R 14662402 14662417 13 81 2.0 6.0 4.0 2.6 96 chr3R 14662321 intron Rad17 - chr3R 14662369 intron Rad17 - chr3R 14662417 exon Rad17 - chr3R_13_14660001 chr3R_14660001 RAL-91 860 chr3R 14878438 14878466 chr3R 14879275 14879303 5 837 2.0 2.0 2.0 1.7 865 chr3R 14878438 intergenic not near genes chr3R 14878870 intergenic not near genes chr3R 14879303 intergenic CG3631 + chr3R_5_14875001 chr3R_14875001 RAL-91 861 chr3R 14959582 14959610 chr3R 14959661 14959689 5 79 0.0 2.0 1.0 2.5 107 chr3R 14959582 intergenic not near genes chr3R 14959636 intergenic not near genes chr3R 14959689 intergenic not near genes chr3R_5_14955001 chr3R_14955001 RAL-91 862 chr3R 15059276 15059477 chr3R 15059470 15059564 BS 9 111 0.0 0.0 0.0 9.0 288 chr3R 15059276 intron dpr9 - chr3R 15059420 intron dpr9 - chr3R 15059564 intron dpr9 - chr3R_9_15055001 chr3R_15055001 RAL-91 863 chr3R 15087748 15087778 chr3R 15087830 15087850 7 80 1.5 1.0 1.2 3.2 102 chr3R 15087748 intron CG6966 - chr3R 15087799 intron CG6966 - chr3R 15087850 intron CG6966 - chr3R_7_15085001 chr3R_15085001 RAL-91 864 chr3R 15132059 15132082 chr3R 15135119 15135142 Juan 5 3060 2.5 4.0 3.2 1.2 3083 chr3R 15132059 intergenic CG42788 - chr3R 15133600 intergenic not near genes chr3R 15135142 3` UTR CG6912 - chr3R_5_15130001 chr3R_15130001 RAL-91 865 chr3R 15143924 15143943 chr3R 15144107 15144124 4 182 0.5 1.0 0.8 2.2 200 chr3R 15143924 intron GlyS - chr3R 15144024 intron GlyS - chr3R 15144124 intron GlyS - chr3R_4_15140001 chr3R_15140001 RAL-91 866 chr3R 15286985 15286988 chr3R 21907534 21907536 36 6620548 17.5 12.0 14.8 2.3 6620551 chr3R 15286985 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_36_18595001 chr3R_18595001 RAL-91 867 chr3R 15416253 15416284 chr3R 15416333 15416364 14 79 1.0 6.0 3.5 3.1 111 chr3R 15416253 3` UTR Atx2 + chr3R 15416308 3` UTR Atx2 + chr3R 15416364 3` UTR Atx2 + chr3R_14_15415001 chr3R_15415001 RAL-91 868 chr3R 15594667 15594671 chr3R 15594749 15594754 6 83 0.0 3.0 1.5 2.4 87 chr3R 15594667 intergenic not near genes chr3R 15594710 intergenic not near genes chr3R 15594754 intergenic not near genes chr3R_6_15590001 chr3R_15590001 RAL-91 869 chr3R 15618731 15618758 chr3R 15626204 15626231 blood 5 7473 1.0 0.5 0.8 2.8 7500 chr3R 15618731 intergenic not near genes chr3R 15622481 intergenic not near genes chr3R 15626231 intergenic not near genes chr3R_5_15620001 chr3R_15620001 RAL-91 870 chr3R 15680634 15680653 chr3R 15681111 15681128 6 476 2.0 5.0 3.5 1.3 494 chr3R 15680634 intron pxb + chr3R 15680881 intron pxb + chr3R 15681128 intron pxb + chr3R_6_15680001 chr3R_15680001 RAL-91 871 chr3R 15790135 15790288 chr3R 15790243 15790406 8 108 3.5 3.0 3.2 1.9 271 chr3R 15790135 exon c(3)G - chr3R 15790270 exon c(3)G - chr3R 15790406 exon c(3)G - chr3R_8_15790001 chr3R_15790001 RAL-91 872 chr3R 15790380 15790404 chr3R 15790585 15790610 4 206 4.0 9.5 6.8 0.5 230 chr3R 15790380 exon c(3)G - chr3R 15790495 exon c(3)G - chr3R 15790610 exon c(3)G - chr3R_4_15790001 chr3R_15790001 RAL-91 873 chr3R 15790841 15790865 chr3R 15790957 15790981 5 116 4.5 9.0 6.8 0.6 140 chr3R 15790841 exon c(3)G - chr3R 15790911 intron c(3)G - chr3R 15790981 exon c(3)G - chr3R_5_15790001 chr3R_15790001 RAL-91 874 chr3R 15878091 15878099 chr3R 15878179 15878187 4 88 0.5 1.0 0.8 2.2 96 chr3R 15878091 intergenic not near genes chr3R 15878139 intergenic not near genes chr3R 15878187 intergenic not near genes chr3R_4_15875001 chr3R_15875001 RAL-91 875 chr3R 16048862 16048882 chr3R 16048941 16048972 8 87 2.0 1.5 1.8 2.9 110 chr3R 16048862 intron ird5 - chr3R 16048917 intron ird5 - chr3R 16048972 intron ird5 - chr3R_8_16045001 chr3R_16045001 RAL-91 876 chr3R 16246523 16246557 chr3R 16246599 16246633 7 76 0.0 6.5 3.2 1.7 110 chr3R 16246523 intron tara + chr3R 16246578 intron tara + chr3R 16246633 intron tara + chr3R_7_16245001 chr3R_16245001 RAL-91 877 chr3R 16464516 16464535 chr3R 16464704 16464719 4 187 3.0 3.0 3.0 1.0 203 chr3R 16464516 exon CG42232 - chr3R 16464618 exon CG42232 - chr3R 16464719 exon CG42232 - chr3R_4_16460001 chr3R_16460001 RAL-91 878 chr3R 16508160 16508184 chr3R 16508246 16508270 5 86 2.5 4.5 3.5 1.1 110 chr3R 16508160 intron CG42342 + chr3R 16508215 intron CG42342 + chr3R 16508270 intron CG42342 + chr3R_5_16505001 chr3R_16505001 RAL-91 879 chr3R 16732146 16732179 chr3R 16732242 16732275 5 96 1.0 0.5 0.8 2.8 129 chr3R 16732146 intron Ubx - chr3R 16732210 intron Ubx - chr3R 16732275 intron Ubx - chr3R_5_16730001 chr3R_16730001 RAL-91 880 chr3R 16756320 16756344 chr3R 16762511 16762525 diver 8 6189 4.0 1.5 2.8 2.1 6205 chr3R 16756320 intron bxd - chr3R 16759422 intron bxd - chr3R 16762525 intron bxd - chr3R_8_16755001 chr3R_16755001 RAL-91 881 chr3R 17335160 17335181 chr3R 17335236 17335250 6 74 3.5 1.5 2.5 1.7 90 chr3R 17335160 intron beat-IIa - chr3R 17335205 intron beat-IIa - chr3R 17335250 intron beat-IIa - chr3R_6_17335001 chr3R_17335001 RAL-91 882 chr3R 17346247 17346247 chr3R 21907534 21907536 4 4561288 11.0 12.0 11.5 0.3 4561289 chr3R 17346247 intron beat-IIa - chr3R 19626892 intron CG6231 - chr3R 21907536 intergenic CG6678 + chr3R_4_19625001 chr3R_19625001 RAL-91 883 chr3R 17361809 17361833 chr3R 17361941 17361966 4 129 2.5 3.0 2.8 1.1 157 chr3R 17361809 intron beat-IIa - chr3R 17361888 intron beat-IIa - chr3R 17361966 intron beat-IIa - chr3R_4_17360001 chr3R_17360001 RAL-91 884 chr3R 17461209 17461230 chr3R 17461291 17461311 4 82 1.5 2.0 1.8 1.4 102 chr3R 17461209 intergenic not near genes chr3R 17461260 intergenic not near genes chr3R 17461311 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-91 885 chr3R 17492189 17492223 chr3R 17492283 17492295 5 89 3.0 1.5 2.2 1.6 106 chr3R 17492189 intron Dscam3 - chr3R 17492242 intron Dscam3 - chr3R 17492295 intron Dscam3 - chr3R_5_17490001 chr3R_17490001 RAL-91 886 chr3R 17497966 17497992 chr3R 17498052 17498078 9 86 1.0 3.0 2.0 3.0 112 chr3R 17497966 intron Dscam3 - chr3R 17498022 intron Dscam3 - chr3R 17498078 intron Dscam3 - chr3R_9_17495001 chr3R_17495001 RAL-91 887 chr3R 17521581 17521583 chr3R 17521717 17521742 4 153 1.0 5.0 3.0 1.0 161 chr3R 17521581 intergenic not near genes chr3R 17521662 intergenic not near genes chr3R 17521742 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-91 888 chr3R 17678588 17678615 chr3R 17678975 17679002 7 387 1.5 2.0 1.8 2.5 414 chr3R 17678588 intron alt - chr3R 17678795 intron alt - chr3R 17679002 intron alt - chr3R_7_17675001 chr3R_17675001 RAL-91 889 chr3R 17748358 17748371 chr3R 17748511 17748521 4 152 3.5 2.5 3.0 1.0 163 chr3R 17748358 intergenic not near genes chr3R 17748440 intergenic not near genes chr3R 17748521 intergenic not near genes chr3R_4_17745001 chr3R_17745001 RAL-91 890 chr3R 17814773 17814792 chr3R 17814858 17814877 6 85 4.5 2.5 3.5 1.3 104 chr3R 17814773 intron tinc + chr3R 17814825 intron tinc + chr3R 17814877 intron tinc + chr3R_6_17810001 chr3R_17810001 RAL-91 891 chr3R 17845207 17845213 chr3R 17845283 17845290 4 76 1.0 1.5 1.2 1.8 83 chr3R 17845207 intron tinc + chr3R 17845248 intron tinc + chr3R 17845290 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-91 892 chr3R 17859390 17859403 chr3R 17859466 17859481 5 78 9.5 3.5 6.5 0.7 91 chr3R 17859390 intron tinc + chr3R 17859436 intron tinc + chr3R 17859481 intron tinc + chr3R_5_17855001 chr3R_17855001 RAL-91 893 chr3R 17859405 17859414 chr3R 17859463 17859467 6 64 6.0 3.0 4.5 1.1 62 chr3R 17859405 intron tinc + chr3R 17859436 intron tinc + chr3R 17859467 intron tinc + chr3R_6_17855001 chr3R_17855001 RAL-91 894 chr3R 17925860 17925865 chr3R 17927327 17927332 hobo 4 1467 5.0 5.0 5.0 0.7 1472 chr3R 17925860 intron cpo + chr3R 17926596 intron cpo + chr3R 17927332 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-91 895 chr3R 17925866 17925885 chr3R 17927321 17927352 hobo 7 1465 1.5 3.5 2.5 2.0 1486 chr3R 17925866 intron cpo + chr3R 17926609 intron cpo + chr3R 17927352 intron cpo + chr3R_7_17925001 chr3R_17925001 RAL-91 896 chr3R 18025333 18025365 chr3R 18025414 18025446 9 81 1.5 0.0 0.8 5.0 113 chr3R 18025333 3` UTR CG7794 + chr3R 18025390 intergenic CG7794 + chr3R 18025446 intergenic CG7794 + chr3R_9_18025001 chr3R_18025001 RAL-91 897 chr3R 18211912 18211920 chr3R 18212039 18212041 4 130 0.0 2.5 1.2 1.8 129 chr3R 18211912 intron CG7985 + chr3R 18211976 intron CG7985 + chr3R 18212041 intron CG7985 + chr3R_4_18210001 chr3R_18210001 RAL-91 898 chr3R 18376194 18376209 chr3R 18376301 18376319 4 109 2.0 1.5 1.8 1.4 125 chr3R 18376194 5` UTR CR44946 + chr3R 18376256 5` UTR CR44946 + chr3R 18376319 5` UTR CR44946 + chr3R_4_18375001 chr3R_18375001 RAL-91 899 chr3R 18442797 18442805 chr3R 18442877 18442881 4 79 13.5 4.5 9.0 0.4 84 chr3R 18442797 intron fru - chr3R 18442839 intron fru - chr3R 18442881 intron fru - chr3R_4_18440001 chr3R_18440001 RAL-91 900 chr3R 18537235 18537265 chr3R 18537319 18537349 5 84 1.5 1.5 1.5 2.0 114 chr3R 18537235 intron fru - chr3R 18537292 intron fru - chr3R 18537349 intron fru - chr3R_5_18535001 chr3R_18535001 RAL-91 901 chr3R 18575571 18575597 chr3R 18575655 18575681 4 84 0.5 1.5 1.0 2.0 110 chr3R 18575571 intron,intron CG7694 +,fray + chr3R 18575626 intron,intron CG7694 +,fray + chr3R 18575681 intron,intron CG7694 +,fray + chr3R_4_18575001 chr3R_18575001 RAL-91 902 chr3R 18606501 18606519 chr3R 18610733 18610751 F-element 4 4232 1.5 1.0 1.2 1.8 4250 chr3R 18606501 intron,intron qin +,CG14304 - chr3R 18608626 intron,intron qin +,CG14304 - chr3R 18610751 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-91 903 chr3R 18670384 18670406 chr3R 18670477 18670499 6 93 1.0 1.0 1.0 3.0 115 chr3R 18670384 intron CG7702 + chr3R 18670442 intron CG7702 + chr3R 18670499 intron CG7702 + chr3R_6_18670001 chr3R_18670001 RAL-91 904 chr3R 18766778 18766795 chr3R 18766856 18766868 4 77 2.0 0.5 1.2 1.8 90 chr3R 18766778 intron CG7720 - chr3R 18766823 intron CG7720 - chr3R 18766868 intron CG7720 - chr3R_4_18765001 chr3R_18765001 RAL-91 905 chr3R 18812076 18812101 chr3R 18812154 18812179 9 78 3.0 3.5 3.2 2.1 103 chr3R 18812076 intron CG18208 - chr3R 18812128 intron CG18208 - chr3R 18812179 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-91 906 chr3R 18817515 18817535 chr3R 18817613 18817633 4 98 0.5 0.5 0.5 2.7 118 chr3R 18817515 intron CG18208 - chr3R 18817574 intron CG18208 - chr3R 18817633 intron CG18208 - chr3R_4_18815001 chr3R_18815001 RAL-91 907 chr3R 18857398 18857416 chr3R 18857476 18857481 4 73 1.5 3.5 2.5 1.1 83 chr3R 18857398 intergenic not near genes chr3R 18857440 intergenic not near genes chr3R 18857481 intergenic not near genes chr3R_4_18855001 chr3R_18855001 RAL-91 908 chr3R 18967141 18967166 chr3R 18967332 18967358 9 193 22.0 22.0 22.0 0.4 217 chr3R 18967141 intron,intron CG42613 +,CG43732 + chr3R 18967250 intron,intron CG42613 +,CG43732 + chr3R 18967358 intron,intron CG42613 +,CG43732 + chr3R_9_18965001 chr3R_18965001 RAL-91 909 chr3R 19106820 19106833 chr3R 19106910 19106914 5 88 3.5 0.0 1.8 1.8 94 chr3R 19106820 intron CG6040 + chr3R 19106867 intron CG6040 + chr3R 19106914 intron CG6040 + chr3R_5_19105001 chr3R_19105001 RAL-91 910 chr3R 19207393 19207417 chr3R 19207481 19207505 8 87 1.0 3.5 2.2 2.5 112 chr3R 19207393 intergenic not near genes chr3R 19207449 intergenic not near genes chr3R 19207505 intergenic not near genes chr3R_8_19205001 chr3R_19205001 RAL-91 911 chr3R 19248883 19248906 chr3R 19248954 19248985 9 77 2.0 0.0 1.0 4.5 102 chr3R 19248883 intergenic not near genes chr3R 19248934 intergenic not near genes chr3R 19248985 intergenic not near genes chr3R_9_19245001 chr3R_19245001 RAL-91 912 chr3R 19320580 19320607 chr3R 19320668 19320695 6 88 5.0 3.5 4.2 1.2 115 chr3R 19320580 intron Dl - chr3R 19320638 intron Dl - chr3R 19320695 intron Dl - chr3R_6_19320001 chr3R_19320001 RAL-91 913 chr3R 19423319 19423336 chr3R 19423563 19423581 7 244 0.0 1.0 0.5 4.7 262 chr3R 19423319 intron CG31221 + chr3R 19423450 intron CG31221 + chr3R 19423581 intron CG31221 + chr3R_7_19420001 chr3R_19420001 RAL-91 914 chr3R 19702323 19702353 chr3R 19702404 19702435 10 80 1.0 5.5 3.2 2.4 112 chr3R 19702323 intergenic not near genes chr3R 19702379 intergenic not near genes chr3R 19702435 intergenic not near genes chr3R_10_19700001 chr3R_19700001 RAL-91 915 chr3R 19908282 19908302 chr3R 19908366 19908386 4 84 0.0 3.5 1.8 1.4 104 chr3R 19908282 intron RhoGAP92B + chr3R 19908334 intron RhoGAP92B + chr3R 19908386 intron RhoGAP92B + chr3R_4_19905001 chr3R_19905001 RAL-91 916 chr3R 19914012 19914041 chr3R 19914105 19914134 4 93 3.5 2.0 2.8 1.1 122 chr3R 19914012 3` UTR RhoGAP92B + chr3R 19914073 3` UTR RhoGAP92B + chr3R 19914134 3` UTR RhoGAP92B + chr3R_4_19910001 chr3R_19910001 RAL-91 917 chr3R 20175091 20175117 chr3R 20175172 20175198 8 82 0.0 1.5 0.8 4.4 107 chr3R 20175091 intergenic CG5023 + chr3R 20175144 intergenic CG5023 + chr3R 20175198 intergenic CG5023 + chr3R_8_20175001 chr3R_20175001 RAL-91 918 chr3R 20337560 20337593 chr3R 20337646 20337679 5 85 1.5 3.0 2.2 1.6 119 chr3R 20337560 intergenic not near genes chr3R 20337620 intergenic not near genes chr3R 20337679 intergenic not near genes chr3R_5_20335001 chr3R_20335001 RAL-91 919 chr3R 20401989 20401999 chr3R 20402067 20402076 6 81 4.5 3.5 4.0 1.2 87 chr3R 20401989 intron Gfrl - chr3R 20402032 intron Gfrl - chr3R 20402076 intron Gfrl - chr3R_6_20400001 chr3R_20400001 RAL-91 920 chr3R 20406495 20406515 chr3R 20406594 20406613 4 99 0.0 0.0 0.0 4.0 118 chr3R 20406495 intron Gfrl - chr3R 20406554 intron Gfrl - chr3R 20406613 intron Gfrl - chr3R_4_20405001 chr3R_20405001 RAL-91 921 chr3R 20411223 20411235 chr3R 20411438 20411450 5 215 2.0 1.5 1.8 1.8 227 chr3R 20411223 intron Gfrl - chr3R 20411336 intron Gfrl - chr3R 20411450 intron Gfrl - chr3R_5_20410001 chr3R_20410001 RAL-91 922 chr3R 20433103 20433125 chr3R 20433193 20433215 7 90 1.0 0.5 0.8 3.9 112 chr3R 20433103 intron Gfrl - chr3R 20433159 intron Gfrl - chr3R 20433215 intron Gfrl - chr3R_7_20430001 chr3R_20430001 RAL-91 923 chr3R 20594482 20594513 chr3R 20594570 20594602 5 89 2.0 0.0 1.0 2.5 120 chr3R 20594482 intron bon + chr3R 20594542 intron bon + chr3R 20594602 intron bon + chr3R_5_20590001 chr3R_20590001 RAL-91 924 chr3R 20771711 20771723 chr3R 20771791 20771799 5 79 0.0 2.5 1.2 2.3 88 chr3R 20771711 intron,intron Syp +,Takl1 - chr3R 20771755 intron,intron Syp +,Takl1 - chr3R 20771799 intron,exon Syp +,Takl1 - chr3R_5_20770001 chr3R_20770001 RAL-91 925 chr3R 20870253 20870281 chr3R 20870337 20870357 5 83 1.0 1.5 1.2 2.3 104 chr3R 20870253 intergenic not near genes chr3R 20870305 intergenic not near genes chr3R 20870357 intergenic not near genes chr3R_5_20870001 chr3R_20870001 RAL-91 926 chr3R 20901655 20901681 chr3R 20901758 20901783 6 102 4.5 2.0 3.2 1.4 128 chr3R 20901655 intergenic CG5621 + chr3R 20901719 intergenic CG5621 + chr3R 20901783 intergenic CG5621 + chr3R_6_20900001 chr3R_20900001 RAL-91 927 chr3R 21014012 21014041 chr3R 21014088 21014119 5 77 1.0 3.0 2.0 1.7 107 chr3R 21014012 3` UTR Calx + chr3R 21014066 3` UTR Calx + chr3R 21014119 3` UTR Calx + chr3R_5_21010001 chr3R_21010001 RAL-91 928 chr3R 21015272 21015298 chr3R 21015352 21015385 7 86 0.5 0.5 0.5 4.7 113 chr3R 21015272 3` UTR Calx + chr3R 21015328 3` UTR Calx + chr3R 21015385 3` UTR Calx + chr3R_7_21015001 chr3R_21015001 RAL-91 929 chr3R 21141677 21141701 chr3R 21150158 21150163 Tirant 5 8471 4.0 3.0 3.5 1.1 8486 chr3R 21141677 intron SNF4Agamma + chr3R 21145920 intron SNF4Agamma + chr3R 21150163 intron SNF4Agamma + chr3R_5_21145001 chr3R_21145001 RAL-91 930 chr3R 21154548 21154583 chr3R 21154753 21154798 11 211 4.0 0.0 2.0 3.7 250 chr3R 21154548 intron SNF4Agamma + chr3R 21154673 intron SNF4Agamma + chr3R 21154798 intron SNF4Agamma + chr3R_11_21150001 chr3R_21150001 RAL-91 931 chr3R 21322974 21322995 chr3R 21323053 21323074 5 79 2.0 0.0 1.0 2.5 100 chr3R 21322974 intron CG16791 - chr3R 21323024 intron CG16791 - chr3R 21323074 intron CG16791 - chr3R_5_21320001 chr3R_21320001 RAL-91 932 chr3R 21426858 21426883 chr3R 21427025 21427060 13 175 1.0 3.0 2.0 4.3 202 chr3R 21426858 intron lbl - chr3R 21426959 intron lbl - chr3R 21427060 intron lbl - chr3R_13_21425001 chr3R_21425001 RAL-91 933 chr3R 21472016 21472022 chr3R 21472096 21472103 4 80 6.5 1.5 4.0 0.8 87 chr3R 21472016 intergenic not near genes chr3R 21472060 intergenic not near genes chr3R 21472103 intergenic not near genes chr3R_4_21470001 chr3R_21470001 RAL-91 934 chr3R 21506874 21506911 chr3R 21506960 21506991 4 82 0.0 3.0 1.5 1.6 117 chr3R 21506874 intron C15 + chr3R 21506932 intron C15 + chr3R 21506991 intron C15 + chr3R_4_21505001 chr3R_21505001 RAL-91 935 chr3R 21586419 21586448 chr3R 21586503 21586532 7 84 4.0 1.0 2.5 2.0 113 chr3R 21586419 intron InR - chr3R 21586476 intron InR - chr3R 21586532 intron InR - chr3R_7_21585001 chr3R_21585001 RAL-91 936 chr3R 21609004 21609032 chr3R 21611638 21611654 NOF 8 2630 4.5 4.5 4.5 1.5 2650 chr3R 21609004 intron InR - chr3R 21610329 intron InR - chr3R 21611654 intron InR - chr3R_8_21610001 chr3R_21610001 RAL-91 937 chr3R 21761119 21761154 chr3R 21768511 21768522 mdg1 16 7384 4.5 4.0 4.2 3.1 7403 chr3R 21761119 exon CG42335 + chr3R 21764820 intron CG42335 + chr3R 21768522 exon CG42335 + chr3R_16_21760001 chr3R_21760001 RAL-91 938 chr3R 8339246 8339247 chr3R 21907534 21907534 9 13568288 13.5 12.0 12.8 0.7 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-91 939 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 10.5 12.0 11.2 0.3 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-91 940 chr3R 21907534 21907534 chr3R 28831801 28831806 32 6924268 14.0 20.5 17.2 1.8 6924272 chr3R 21907534 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831806 intron WASp - chr3R_32_25365001 chr3R_25365001 RAL-91 941 chr3R 21907534 21907534 chr3R 29013339 29013340 7 7105806 14.0 11.5 12.8 0.5 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_7_25460001 chr3R_25460001 RAL-91 942 chr3R 8339246 8339247 chr3R 21907535 21907535 11 13568288 13.5 12.0 12.8 0.8 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-91 943 chr3R 9620956 9620956 chr3R 21907535 21907535 5 12286579 10.5 12.0 11.2 0.4 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-91 944 chr3R 21907535 21907535 chr3R 26659333 26659336 8 4751799 14.0 20.0 17.0 0.4 4751801 chr3R 21907535 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659336 intron beat-VII - chr3R_8_24280001 chr3R_24280001 RAL-91 945 chr3R 21907535 21907535 chr3R 28831801 28831804 39 6924267 14.0 20.5 17.2 2.1 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_39_25365001 chr3R_25365001 RAL-91 946 chr3R 9620956 9620956 chr3R 21907536 21907536 4 12286580 10.5 12.0 11.2 0.3 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-91 947 chr3R 15286985 15286989 chr3R 21907536 21907536 4 6620549 17.5 12.0 14.8 0.3 6620551 chr3R 15286985 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-91 948 chr3R 21907536 21907536 chr3R 26659332 26659337 8 4751798 14.0 19.5 16.8 0.4 4751801 chr3R 21907536 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_8_24280001 chr3R_24280001 RAL-91 949 chr3R 21907536 21907536 chr3R 28831801 28831802 41 6924266 14.0 20.5 17.2 2.3 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_41_25365001 chr3R_25365001 RAL-91 950 chr3R 21983139 21983168 chr3R 21983220 21983248 4 80 2.0 1.5 1.8 1.4 109 chr3R 21983139 intron Eip93F + chr3R 21983194 intron Eip93F + chr3R 21983248 intron Eip93F + chr3R_4_21980001 chr3R_21980001 RAL-91 951 chr3R 22321673 22321690 chr3R 22321750 22321763 4 76 3.0 0.5 1.8 1.4 90 chr3R 22321673 intron CG34377 - chr3R 22321718 intron CG34377 - chr3R 22321763 intron CG34377 - chr3R_4_22320001 chr3R_22320001 RAL-91 952 chr3R 22346181 22346196 chr3R 22346267 22346281 4 86 3.0 0.5 1.8 1.4 100 chr3R 22346181 intergenic not near genes chr3R 22346231 intergenic not near genes chr3R 22346281 intergenic not near genes chr3R_4_22345001 chr3R_22345001 RAL-91 953 chr3R 22450543 22450576 chr3R 22453183 22453216 NOF 10 2640 2.0 3.0 2.5 2.9 2673 chr3R 22450543 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453216 intron CG34376 + chr3R_10_22450001 chr3R_22450001 RAL-91 954 chr3R 22516407 22516414 chr3R 22516499 22516507 4 92 2.0 6.0 4.0 0.8 100 chr3R 22516407 intron Octbeta1R + chr3R 22516457 intron Octbeta1R + chr3R 22516507 intron Octbeta1R + chr3R_4_22515001 chr3R_22515001 RAL-91 955 chr3R 22538449 22538473 chr3R 22538534 22538558 5 85 1.0 0.0 0.5 3.3 109 chr3R 22538449 intron CG5326 - chr3R 22538504 intron CG5326 - chr3R 22538558 intron CG5326 - chr3R_5_22535001 chr3R_22535001 RAL-91 956 chr3R 22572245 22572269 chr3R 22572333 22572357 6 86 2.0 2.0 2.0 2.0 112 chr3R 22572245 intron CG33110 + chr3R 22572301 intron CG33110 + chr3R 22572357 intron CG33110 + chr3R_6_22570001 chr3R_22570001 RAL-91 957 chr3R 22597375 22597395 chr3R 22597452 22597472 12 74 5.5 3.5 4.5 2.2 97 chr3R 22597375 intron Efa6 + chr3R 22597424 intron Efa6 + chr3R 22597472 intron Efa6 + chr3R_12_22595001 chr3R_22595001 RAL-91 958 chr3R 22684207 22684238 chr3R 22684283 22684310 5 73 1.0 1.5 1.2 2.3 103 chr3R 22684207 intergenic not near genes chr3R 22684258 intergenic not near genes chr3R 22684310 intergenic not near genes chr3R_5_22680001 chr3R_22680001 RAL-91 959 chr3R 22711243 22711248 chr3R 22711319 22711324 4 76 1.0 8.0 4.5 0.7 81 chr3R 22711243 3` UTR wge - chr3R 22711284 3` UTR wge - chr3R 22711324 3` UTR wge - chr3R_4_22710001 chr3R_22710001 RAL-91 960 chr3R 22871446 22871464 chr3R 22871545 22871563 4 99 1.0 1.0 1.0 2.0 117 chr3R 22871446 intergenic not near genes chr3R 22871504 intergenic not near genes chr3R 22871563 intergenic not near genes chr3R_4_22870001 chr3R_22870001 RAL-91 961 chr3R 22877296 22877325 chr3R 22877424 22877453 4 128 2.0 0.5 1.2 1.8 157 chr3R 22877296 intergenic not near genes chr3R 22877374 intergenic not near genes chr3R 22877453 intergenic not near genes chr3R_4_22875001 chr3R_22875001 RAL-91 962 chr3R 22881205 22881220 chr3R 22884911 22884925 Doc 4 3705 1.0 0.5 0.8 2.2 3720 chr3R 22881205 intergenic not near genes chr3R 22883065 intergenic not near genes chr3R 22884925 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-91 963 chr3R 23090404 23090437 chr3R 23090486 23090505 5 79 1.0 0.5 0.8 2.8 101 chr3R 23090404 intron CG13830 - chr3R 23090454 intron CG13830 - chr3R 23090505 intron CG13830 - chr3R_5_23090001 chr3R_23090001 RAL-91 964 chr3R 23145166 23145193 chr3R 23145243 23145269 8 76 0.0 1.5 0.8 4.4 103 chr3R 23145166 intergenic not near genes chr3R 23145218 intergenic not near genes chr3R 23145269 intergenic not near genes chr3R_8_23145001 chr3R_23145001 RAL-91 965 chr3R 23211983 23211991 chr3R 23212061 23212069 4 78 2.5 3.5 3.0 1.0 86 chr3R 23211983 intron cnc - chr3R 23212026 intron cnc - chr3R 23212069 intron cnc - chr3R_4_23210001 chr3R_23210001 RAL-91 966 chr3R 23421985 23422008 chr3R 23422070 23422093 5 84 2.0 3.0 2.5 1.4 108 chr3R 23421985 intron CG4374 - chr3R 23422039 intron CG4374 - chr3R 23422093 intron CG4374 - chr3R_5_23420001 chr3R_23420001 RAL-91 967 chr3R 23453685 23453712 chr3R 23453763 23453791 9 78 2.0 1.5 1.8 3.2 106 chr3R 23453685 intron CG4374 - chr3R 23453738 intron CG4374 - chr3R 23453791 intron CG4374 - chr3R_9_23450001 chr3R_23450001 RAL-91 968 chr3R 23684699 23684730 chr3R 23685184 23685194 roo 9 478 2.5 4.5 3.5 2.0 495 chr3R 23684699 exon CG18754 + chr3R 23684946 intron CG18754 + chr3R 23685194 exon CG18754 + chr3R_9_23680001 chr3R_23680001 RAL-91 969 chr3R 23713657 23713686 chr3R 23713737 23713757 10 76 2.5 3.5 3.0 2.5 100 chr3R 23713657 intron nau - chr3R 23713707 intron nau - chr3R 23713757 intron nau - chr3R_10_23710001 chr3R_23710001 RAL-91 970 chr3R 23733813 23733835 chr3R 23734025 23734048 7 213 4.5 4.5 4.5 1.3 235 chr3R 23733813 5` UTR Hmgcr + chr3R 23733930 intron Hmgcr + chr3R 23734048 intron Hmgcr + chr3R_7_23730001 chr3R_23730001 RAL-91 971 chr3R 23868217 23868246 chr3R 23868292 23868323 9 76 2.5 2.0 2.2 2.8 106 chr3R 23868217 intron Pli - chr3R 23868270 intron Pli - chr3R 23868323 intron Pli - chr3R_9_23865001 chr3R_23865001 RAL-91 972 chr3R 23937619 23937635 chr3R 23937717 23937733 8 98 3.5 5.0 4.2 1.5 114 chr3R 23937619 exon Gdh - chr3R 23937676 intron Gdh - chr3R 23937733 exon Gdh - chr3R_8_23935001 chr3R_23935001 RAL-91 973 chr3R 23944914 23944935 chr3R 23944999 23945019 10 85 1.5 4.0 2.8 2.6 105 chr3R 23944914 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945019 exon CG12268 - chr3R_10_23940001 chr3R_23940001 RAL-91 974 chr3R 23949060 23949075 chr3R 23949137 23949152 5 77 2.5 2.0 2.2 1.6 92 chr3R 23949060 intergenic not near genes chr3R 23949106 intergenic not near genes chr3R 23949152 intergenic not near genes chr3R_5_23945001 chr3R_23945001 RAL-91 975 chr3R 24072091 24072117 chr3R 24072528 24072550 jockey 5 433 2.0 10.0 6.0 0.7 459 chr3R 24072091 intron 4EHP - chr3R 24072320 intron 4EHP - chr3R 24072550 intron 4EHP - chr3R_5_24070001 chr3R_24070001 RAL-91 976 chr3R 24076915 24076946 chr3R 24078382 24078412 hobo 4 1465 4.0 3.5 3.8 0.8 1497 chr3R 24076915 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078412 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-91 977 chr3R 24207233 24207243 chr3R 24212297 24212319 flea 4 5073 2.5 4.5 3.5 0.9 5086 chr3R 24207233 intron twin - chr3R 24209776 intron twin - chr3R 24212319 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-91 978 chr3R 21907534 21907536 chr3R 24389465 24389465 11 2481930 14.0 8.0 11.0 0.9 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_11_23145001 chr3R_23145001 RAL-91 979 chr3R 24434240 24434270 chr3R 24434318 24434347 5 78 1.0 2.5 1.8 1.8 107 chr3R 24434240 intron nAChRalpha1 - chr3R 24434294 intron nAChRalpha1 - chr3R 24434347 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-91 980 chr3R 24457906 24457931 chr3R 24458101 24458132 11 200 2.5 2.5 2.5 3.1 226 chr3R 24457906 intergenic not near genes chr3R 24458019 intergenic not near genes chr3R 24458132 intergenic not near genes chr3R_11_24455001 chr3R_24455001 RAL-91 981 chr3R 24527805 24527830 chr3R 24527896 24527921 5 91 0.5 0.5 0.5 3.3 116 chr3R 24527805 intergenic CG6607 +,CG13618 + chr3R 24527863 intergenic CG6607 +,CG13618 + chr3R 24527921 intergenic CG6607 +,CG13618 + chr3R_5_24525001 chr3R_24525001 RAL-91 982 chr3R 24670052 24670191 chr3R 24670162 24670276 7 103 0.0 0.0 0.0 7.0 224 chr3R 24670052 intron slo + chr3R 24670164 intron slo + chr3R 24670276 intron slo + chr3R_7_24670001 chr3R_24670001 RAL-91 983 chr3R 24730095 24730105 chr3R 24732470 24732483 Doc 5 2374 9.0 2.5 5.8 0.7 2388 chr3R 24730095 intron tok + chr3R 24731289 intron tok + chr3R 24732483 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-91 984 chr3R 24789990 24790003 chr3R 24790133 24790148 4 144 3.0 2.5 2.8 1.1 158 chr3R 24789990 intron,5` UTR Ets96B +,CG13634 - chr3R 24790069 intron,5` UTR Ets96B +,CG13634 - chr3R 24790148 intron Ets96B + chr3R_4_24790001 chr3R_24790001 RAL-91 985 chr3R 24927136 24927153 chr3R 24931916 24931944 Doc 4 4787 4.0 3.0 3.5 0.9 4808 chr3R 24927136 intergenic Trf4-2 + chr3R 24929540 intergenic not near genes chr3R 24931944 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-91 986 chr3R 24974916 24974934 chr3R 24974995 24975012 5 78 1.5 5.5 3.5 1.1 96 chr3R 24974916 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975012 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-91 987 chr3R 25168371 25168401 chr3R 25168454 25168484 8 83 6.0 4.5 5.2 1.3 113 chr3R 25168371 intergenic not near genes chr3R 25168428 intergenic not near genes chr3R 25168484 intergenic not near genes chr3R_8_25165001 chr3R_25165001 RAL-91 988 chr3R 25209605 25209629 chr3R 25209680 25209711 8 81 3.5 4.0 3.8 1.7 106 chr3R 25209605 intron CG13654 + chr3R 25209658 intron CG13654 + chr3R 25209711 intron CG13654 + chr3R_8_25205001 chr3R_25205001 RAL-91 989 chr3R 25232522 25232548 chr3R 25232784 25232811 7 262 4.0 4.0 4.0 1.4 289 chr3R 25232522 intergenic Cad96Cb - chr3R 25232666 intergenic Cad96Cb - chr3R 25232811 intergenic Cad96Cb - chr3R_7_25230001 chr3R_25230001 RAL-91 990 chr3R 25390205 25390221 chr3R 25390604 25390620 8 399 1.0 0.5 0.8 4.4 415 chr3R 25390205 intron Fur1 - chr3R 25390412 intron Fur1 - chr3R 25390620 intron Fur1 - chr3R_8_25390001 chr3R_25390001 RAL-91 991 chr3R 25529382 25529409 chr3R 25529620 25529629 13 236 2.0 3.0 2.5 3.7 247 chr3R 25529382 intron msi + chr3R 25529506 intron msi + chr3R 25529629 intron msi + chr3R_13_25525001 chr3R_25525001 RAL-91 992 chr3R 25832694 25832723 chr3R 25841876 25841905 roo 13 9182 6.5 4.5 5.5 2.0 9211 chr3R 25832694 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_13_25835001 chr3R_25835001 RAL-91 993 chr3R 25861823 25861845 chr3R 25861900 25861922 4 77 0.5 1.0 0.8 2.2 99 chr3R 25861823 intron CG5890 + chr3R 25861872 intron CG5890 + chr3R 25861922 intron CG5890 + chr3R_4_25860001 chr3R_25860001 RAL-91 994 chr3R 26060402 26060434 chr3R 26060488 26060520 11 85 3.5 4.5 4.0 2.2 118 chr3R 26060402 intron CG14544 + chr3R 26060461 intron CG14544 + chr3R 26060520 intron CG14544 + chr3R_11_26060001 chr3R_26060001 RAL-91 995 chr3R 26108827 26108843 chr3R 26117410 26117424 Tirant 7 8581 1.5 1.0 1.2 3.2 8597 chr3R 26108827 5` UTR CG31324 + chr3R 26113126 intron CG31324 + chr3R 26117424 intron CG31324 + chr3R_7_26110001 chr3R_26110001 RAL-91 996 chr3R 26204015 26204020 chr3R 26204081 26204103 5 80 0.5 1.5 1.0 2.5 88 chr3R 26204015 intron CR44320 + chr3R 26204059 intron CR44320 + chr3R 26204103 intron CR44320 + chr3R_5_26200001 chr3R_26200001 RAL-91 997 chr3R 26292125 26292138 chr3R 26292183 26292218 4 71 2.0 0.5 1.2 1.8 93 chr3R 26292125 intergenic not near genes chr3R 26292172 intergenic not near genes chr3R 26292218 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-91 998 chr3R 26314854 26314889 chr3R 26315221 26315256 7 367 2.0 2.0 2.0 2.3 402 chr3R 26314854 intergenic not near genes chr3R 26315055 intergenic not near genes chr3R 26315256 intergenic not near genes chr3R_7_26315001 chr3R_26315001 RAL-91 999 chr3R 26332897 26332908 chr3R 26332984 26332997 4 88 2.0 4.0 3.0 1.0 100 chr3R 26332897 intron CG33970 + chr3R 26332947 intron CG33970 + chr3R 26332997 intron CG33970 + chr3R_4_26330001 chr3R_26330001 RAL-91 1000 chr3R 26541018 26541030 chr3R 26541097 26541108 4 79 0.0 1.5 0.8 2.2 90 chr3R 26541018 intron scrib + chr3R 26541063 intron scrib + chr3R 26541108 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-91 1001 chr3R 26542045 26542074 chr3R 26542136 26542165 4 90 1.5 1.0 1.2 1.8 120 chr3R 26542045 intron scrib + chr3R 26542105 intron scrib + chr3R 26542165 intron scrib + chr3R_4_26540001 chr3R_26540001 RAL-91 1002 chr3R 26558326 26558357 chr3R 26565639 26565647 Stalker4 6 7308 2.0 2.0 2.0 2.0 7321 chr3R 26558326 intron scrib + chr3R 26561986 intron scrib + chr3R 26565647 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-91 1003 chr3R 26629062 26629097 chr3R 26629142 26629177 17 79 2.0 3.0 2.5 4.9 115 chr3R 26629062 intergenic TwdlK - chr3R 26629120 intergenic TwdlK - chr3R 26629177 intergenic TwdlK - chr3R_17_26625001 chr3R_26625001 RAL-91 1004 chr3R 26641639 26641663 chr3R 26641726 26641750 4 86 1.5 5.5 3.5 0.9 111 chr3R 26641639 intergenic not near genes chr3R 26641694 intergenic not near genes chr3R 26641750 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-91 1005 chr3R 26642733 26642754 chr3R 26643126 26643148 jockey 4 394 2.0 1.0 1.5 1.6 415 chr3R 26642733 intergenic not near genes chr3R 26642940 intergenic not near genes chr3R 26643148 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-91 1006 chr3R 26660654 26660679 chr3R 26660734 26660755 6 78 2.5 3.0 2.8 1.6 101 chr3R 26660654 intron beat-VII - chr3R 26660704 intron beat-VII - chr3R 26660755 intron beat-VII - chr3R_6_26660001 chr3R_26660001 RAL-91 1007 chr3R 26845577 26845603 chr3R 26845650 26845683 21 79 5.0 2.0 3.5 4.7 106 chr3R 26845577 intron Lerp - chr3R 26845630 intron Lerp - chr3R 26845683 intron Lerp - chr3R_21_26845001 chr3R_26845001 RAL-91 1008 chr3R 27028723 27028743 chr3R 27028802 27028822 11 79 1.5 2.5 2.0 3.7 99 chr3R 27028723 intron RYa-R + chr3R 27028772 intron RYa-R + chr3R 27028822 intron RYa-R + chr3R_11_27025001 chr3R_27025001 RAL-91 1009 chr3R 27030222 27030250 chr3R 27030350 27030377 6 128 1.0 0.0 0.5 4.0 155 chr3R 27030222 intron RYa-R + chr3R 27030300 intron RYa-R + chr3R 27030377 intron RYa-R + chr3R_6_27030001 chr3R_27030001 RAL-91 1010 chr3R 27140514 27140547 chr3R 27148123 27148156 412 11 7610 1.5 2.5 2.0 3.7 7642 chr3R 27140514 intron CG6051 - chr3R 27144335 intron CG6051 - chr3R 27148156 intron CG6051 - chr3R_11_27140001 chr3R_27140001 RAL-91 1011 chr3R 27245610 27245613 chr3R 27245682 27245684 6 81 5.5 2.5 4.0 1.2 74 chr3R 27245610 intergenic CG18766 - chr3R 27245647 intergenic CG18766 - chr3R 27245684 intergenic CG18766 - chr3R_6_27245001 chr3R_27245001 RAL-91 1012 chr3R 27315994 27316013 chr3R 27316070 27316089 8 74 4.0 4.0 4.0 1.6 95 chr3R 27315994 intron CG3339 - chr3R 27316042 intron CG3339 - chr3R 27316089 exon CG3339 - chr3R_8_27315001 chr3R_27315001 RAL-91 1013 chr3R 27342796 27342823 chr3R 27351377 27351404 Tirant 5 8581 4.0 1.0 2.5 1.4 8608 chr3R 27342796 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351404 intron CG42534 + chr3R_5_27345001 chr3R_27345001 RAL-91 1014 chr3R 27379483 27379507 chr3R 27380103 27380117 9 619 3.0 5.0 4.0 1.8 634 chr3R 27379483 3` UTR side - chr3R 27379800 3` UTR side - chr3R 27380117 3` UTR side - chr3R_9_27375001 chr3R_27375001 RAL-91 1015 chr3R 27397243 27397245 chr3R 27397319 27397321 4 76 0.0 7.0 3.5 0.9 78 chr3R 27397243 intron side - chr3R 27397282 intron side - chr3R 27397321 intron side - chr3R_4_27395001 chr3R_27395001 RAL-91 1016 chr3R 27397246 27397252 chr3R 27397314 27397328 5 73 0.0 7.0 3.5 1.1 82 chr3R 27397246 intron side - chr3R 27397287 intron side - chr3R 27397328 intron side - chr3R_5_27395001 chr3R_27395001 RAL-91 1017 chr3R 27434598 27434618 chr3R 27434713 27434735 9 116 3.5 7.0 5.2 1.5 137 chr3R 27434598 intron side - chr3R 27434666 intron side - chr3R 27434735 intron side - chr3R_9_27430001 chr3R_27430001 RAL-91 1018 chr3R 27445252 27445273 chr3R 27445326 27445327 7 72 2.0 4.0 3.0 1.8 75 chr3R 27445252 intergenic not near genes chr3R 27445290 intergenic not near genes chr3R 27445327 intergenic not near genes chr3R_7_27445001 chr3R_27445001 RAL-91 1019 chr3R 27725566 27725571 chr3R 27731008 27731013 I-element 4 5442 5.0 0.0 2.5 1.1 5447 chr3R 27725566 intergenic not near genes chr3R 27728290 intergenic not near genes chr3R 27731013 intergenic not near genes chr3R_4_27725001 chr3R_27725001 RAL-91 1020 chr3R 27791643 27791647 chr3R 27794797 27794797 Rt1c 4 3152 7.5 9.0 8.2 0.4 3154 chr3R 27791643 intron CG34353 - chr3R 27793220 intron CG34353 - chr3R 27794797 intron CG34353 - chr3R_4_27790001 chr3R_27790001 RAL-91 1021 chr3R 27823664 27823697 chr3R 27823749 27823776 12 84 8.0 3.0 5.5 1.8 112 chr3R 27823664 intron CG34353 - chr3R 27823720 intron CG34353 - chr3R 27823776 intron CG34353 - chr3R_12_27820001 chr3R_27820001 RAL-91 1022 chr3R 27871056 27871088 chr3R 27871156 27871173 8 98 2.0 1.0 1.5 3.2 117 chr3R 27871056 intron CG34353 - chr3R 27871114 intron CG34353 - chr3R 27871173 intron CG34353 - chr3R_8_27870001 chr3R_27870001 RAL-91 1023 chr3R 28068499 28068512 chr3R 28073938 28073954 I-element 6 5441 2.0 2.5 2.2 1.9 5455 chr3R 28068499 intron CG34362 + chr3R 28071226 intron CG34362 + chr3R 28073954 intron CG34362 + chr3R_6_28070001 chr3R_28070001 RAL-91 1024 chr3R 28132495 28132521 chr3R 28132574 28132600 7 77 3.5 0.5 2.0 2.3 105 chr3R 28132495 intergenic not near genes chr3R 28132548 intergenic not near genes chr3R 28132600 intergenic not near genes chr3R_7_28130001 chr3R_28130001 RAL-91 1025 chr3R 28172975 28172995 chr3R 28173132 28173152 5 155 0.5 2.5 1.5 2.0 177 chr3R 28172975 intron CG34354 + chr3R 28173064 intron CG34354 + chr3R 28173152 intron CG34354 + chr3R_5_28170001 chr3R_28170001 RAL-91 1026 chr3R 28173672 28173681 chr3R 28181102 28181111 mdg1 4 7430 0.5 1.0 0.8 2.2 7439 chr3R 28173672 intron CG34354 + chr3R 28177392 intron CG34354 + chr3R 28181111 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-91 1027 chr3R 28253347 28253370 chr3R 28255857 28255880 jockey 11 2509 1.5 3.5 2.5 3.1 2533 chr3R 28253347 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255880 intergenic not near genes chr3R_11_28250001 chr3R_28250001 RAL-91 1028 chr3R 28282997 28283019 chr3R 28283626 28283648 4 629 1.5 4.0 2.8 1.1 651 chr3R 28282997 exon CG34436 + chr3R 28283322 exon CG34436 + chr3R 28283648 intergenic CG34437 +,CG34436 + chr3R_4_28280001 chr3R_28280001 RAL-91 1029 chr3R 28352514 28352545 chr3R 28352854 28352885 9 340 1.0 1.0 1.0 4.5 371 chr3R 28352514 exon Or98b + chr3R 28352700 exon Or98b + chr3R 28352885 exon Or98b + chr3R_9_28350001 chr3R_28350001 RAL-91 1030 chr3R 28437134 28437141 chr3R 28437313 28437321 5 179 4.0 6.0 5.0 0.8 187 chr3R 28437134 intron beat-VI + chr3R 28437228 intron beat-VI + chr3R 28437321 intron beat-VI + chr3R_5_28435001 chr3R_28435001 RAL-91 1031 chr3R 28637818 28637850 chr3R 28640299 28640326 8 2483 26.0 7.5 16.8 0.4 2508 chr3R 28637818 exon CG9988 + chr3R 28639072 intergenic CG9988 + chr3R 28640326 intergenic not near genes chr3R_8_28635001 chr3R_28635001 RAL-91 1032 chr3R 28687092 28687120 chr3R 28687170 28687199 7 78 2.5 5.0 3.8 1.5 107 chr3R 28687092 intron CG9990 + chr3R 28687146 intron CG9990 + chr3R 28687199 intron CG9990 + chr3R_7_28685001 chr3R_28685001 RAL-91 1033 chr3R 28792879 28792903 chr3R 28797969 28797997 jockey 4 5093 1.0 2.0 1.5 1.6 5118 chr3R 28792879 intergenic not near genes chr3R 28795438 intergenic not near genes chr3R 28797997 intergenic not near genes chr3R_4_28795001 chr3R_28795001 RAL-91 1034 chr3R 21907534 21907534 chr3R 28831798 28831799 5 6924264 14.0 20.0 17.0 0.3 6924265 chr3R 21907534 intergenic CG6678 + chr3R 25369666 intron Fur1 - chr3R 28831799 intron WASp - chr3R_5_25365001 chr3R_25365001 RAL-91 1035 chr3R 21907534 21907536 chr3R 28831801 28831801 57 6924266 14.0 20.5 17.2 3.1 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_57_25365001 chr3R_25365001 RAL-91 1036 chr3R 21907534 21907536 chr3R 28831802 28831802 45 6924267 14.0 20.5 17.2 2.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_45_25365001 chr3R_25365001 RAL-91 1037 chr3R 28955332 28955362 chr3R 28955475 28955505 6 143 0.0 0.0 0.0 6.0 173 chr3R 28955332 intron CG14521 - chr3R 28955418 intron CG14521 - chr3R 28955505 intron CG14521 - chr3R_6_28955001 chr3R_28955001 RAL-91 1038 chr3R 28998306 28998332 chr3R 28998556 28998582 8 250 5.0 1.5 3.2 1.9 276 chr3R 28998306 intron wat - chr3R 28998444 intron wat - chr3R 28998582 intron wat - chr3R_8_28995001 chr3R_28995001 RAL-91 1039 chr3R 29012969 29012992 chr3R 29013055 29013079 6 87 0.5 1.0 0.8 3.3 110 chr3R 29012969 intron wat - chr3R 29013024 intron wat - chr3R 29013079 intron wat - chr3R_6_29010001 chr3R_29010001 RAL-91 1040 chr3R 29021448 29021484 chr3R 29021705 29021740 12 252 1.5 4.0 2.8 3.2 292 chr3R 29021448 3` UTR CR44264 - chr3R 29021594 3` UTR CR44264 - chr3R 29021740 3` UTR CR44264 - chr3R_12_29020001 chr3R_29020001 RAL-91 1041 chr3R 29034072 29034076 chr3R 29034469 29034473 5 397 4.0 3.0 3.5 1.1 401 chr3R 29034072 5` UTR CR45044 + chr3R 29034272 intergenic CR45044 +,beta4GalNAcTB -,Cpsf100 + chr3R 29034473 intergenic Cpsf100 +,CR45044 +,beta4GalNAcTB - chr3R_5_29030001 chr3R_29030001 RAL-91 1042 chr3R 29094030 29094051 chr3R 29094239 29094265 5 210 3.0 2.0 2.5 1.4 235 chr3R 29094030 intron CG11873 + chr3R 29094148 intron CG11873 + chr3R 29094265 intron CG11873 + chr3R_5_29090001 chr3R_29090001 RAL-91 1043 chr3R 29249624 29249643 chr3R 29249711 29249730 4 87 2.5 2.0 2.2 1.2 106 chr3R 29249624 intron SP1029 - chr3R 29249677 intron SP1029 - chr3R 29249730 intron SP1029 - chr3R_4_29245001 chr3R_29245001 RAL-91 1044 chr3R 29256269 29256300 chr3R 29256348 29256380 10 78 3.5 3.0 3.2 2.4 111 chr3R 29256269 intergenic CG45544 +,stg - chr3R 29256324 intergenic CG45544 + chr3R 29256380 intergenic CG45544 + chr3R_10_29255001 chr3R_29255001 RAL-91 1045 chr3R 29351731 29351750 chr3R 29351816 29351833 6 84 3.0 1.5 2.2 1.9 102 chr3R 29351731 intergenic not near genes chr3R 29351782 intergenic not near genes chr3R 29351833 intergenic not near genes chr3R_6_29350001 chr3R_29350001 RAL-91 1046 chr3R 29402987 29403000 chr3R 29403082 29403095 4 95 1.0 0.0 0.5 2.7 108 chr3R 29402987 intron Ptp99A + chr3R 29403041 intron Ptp99A + chr3R 29403095 intron Ptp99A + chr3R_4_29400001 chr3R_29400001 RAL-91 1047 chr3R 29406622 29406652 chr3R 29407900 29407922 jockey 12 1282 3.0 4.5 3.8 2.5 1300 chr3R 29406622 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407922 intron Ptp99A + chr3R_12_29405001 chr3R_29405001 RAL-91 1048 chr3R 29412016 29412049 chr3R 29412093 29412128 5 78 2.0 2.5 2.2 1.6 112 chr3R 29412016 intron Ptp99A + chr3R 29412072 intron Ptp99A + chr3R 29412128 intron Ptp99A + chr3R_5_29410001 chr3R_29410001 RAL-91 1049 chr3R 29430373 29430404 chr3R 29430479 29430510 10 106 4.0 1.5 2.8 2.6 137 chr3R 29430373 intron Ptp99A + chr3R 29430442 intron Ptp99A + chr3R 29430510 intron Ptp99A + chr3R_10_29430001 chr3R_29430001 RAL-91 1050 chr3R 29472011 29472036 chr3R 29472103 29472127 6 92 1.0 1.5 1.2 2.7 116 chr3R 29472011 intron Ptp99A + chr3R 29472069 intron Ptp99A + chr3R 29472127 intron Ptp99A + chr3R_6_29470001 chr3R_29470001 RAL-91 1051 chr3R 29505909 29505925 chr3R 29505986 29506002 6 77 1.0 4.0 2.5 1.7 93 chr3R 29505909 intergenic not near genes chr3R 29505956 intergenic not near genes chr3R 29506002 intergenic not near genes chr3R_6_29505001 chr3R_29505001 RAL-91 1052 chr3R 29550258 29550272 chr3R 29550337 29550338 7 79 4.5 1.5 3.0 1.8 80 chr3R 29550258 intergenic not near genes chr3R 29550298 intergenic not near genes chr3R 29550338 intergenic not near genes chr3R_7_29550001 chr3R_29550001 RAL-91 1053 chr3R 29590382 29590400 chr3R 29590475 29590493 7 93 0.0 4.0 2.0 2.3 111 chr3R 29590382 intron CG31041 - chr3R 29590438 intron CG31041 - chr3R 29590493 intron CG31041 - chr3R_7_29590001 chr3R_29590001 RAL-91 1054 chr3R 29636612 29636630 chr3R 29636688 29636707 4 76 1.0 1.5 1.2 1.8 95 chr3R 29636612 intron Dop1R2 - chr3R 29636660 intron Dop1R2 - chr3R 29636707 intron Dop1R2 - chr3R_4_29635001 chr3R_29635001 RAL-91 1055 chr3R 29645827 29645856 chr3R 29645908 29645936 11 78 2.5 4.0 3.2 2.6 109 chr3R 29645827 intron Dop1R2 - chr3R 29645882 intron Dop1R2 - chr3R 29645936 intron Dop1R2 - chr3R_11_29645001 chr3R_29645001 RAL-91 1056 chr3R 29655652 29655683 chr3R 29655731 29655761 5 79 2.0 2.0 2.0 1.7 109 chr3R 29655652 intron Dop1R2 - chr3R 29655706 intron Dop1R2 - chr3R 29655761 intron Dop1R2 - chr3R_5_29655001 chr3R_29655001 RAL-91 1057 chr3R 29738264 29738298 chr3R 29739731 29739765 hobo 5 1467 0.0 2.5 1.2 2.3 1501 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739765 5` UTR CG1969 + chr3R_5_29735001 chr3R_29735001 RAL-91 1058 chr3R 29882023 29882052 chr3R 29891180 29891209 roo 8 9157 2.5 2.5 2.5 2.3 9186 chr3R 29882023 intron CG31038 + chr3R 29886616 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-91 1059 chr3R 29950574 29950597 chr3R 29950651 29950674 8 75 3.0 2.0 2.5 2.3 100 chr3R 29950574 intergenic TkR99D - chr3R 29950624 intergenic TkR99D - chr3R 29950674 intergenic TkR99D - chr3R_8_29950001 chr3R_29950001 RAL-91 1060 chr3R 30013686 30013697 chr3R 30013769 30013780 7 83 3.0 2.5 2.8 1.8 94 chr3R 30013686 intron CG7920 - chr3R 30013733 intron CG7920 - chr3R 30013780 intron CG7920 - chr3R_7_30010001 chr3R_30010001 RAL-91 1061 chr3R 30032163 30032176 chr3R 30032242 30032255 4 79 4.0 4.5 4.2 0.8 92 chr3R 30032163 intron Axn + chr3R 30032209 intron Axn + chr3R 30032255 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-91 1062 chr3R 30063560 30063593 chr3R 30063998 30064031 5 436 5.5 3.5 4.5 0.9 471 chr3R 30063560 intron sima + chr3R 30063796 intron sima + chr3R 30064031 intron sima + chr3R_5_30060001 chr3R_30060001 RAL-91 1063 chr3R 30156870 30156895 chr3R 30156949 30156967 8 78 6.0 3.5 4.8 1.4 97 chr3R 30156870 intron CG11498 - chr3R 30156918 intron CG11498 - chr3R 30156967 intron CG11498 - chr3R_8_30155001 chr3R_30155001 RAL-91 1064 chr3R 30330505 30330524 chr3R 30330578 30330603 6 76 0.5 1.0 0.8 3.3 98 chr3R 30330505 intron hdc + chr3R 30330554 intron hdc + chr3R 30330603 intron hdc + chr3R_6_30330001 chr3R_30330001 RAL-91 1065 chr3R 30396226 30396234 chr3R 30404492 30404500 roo 5 8266 4.5 4.5 4.5 0.9 8274 chr3R 30396226 intergenic not near genes chr3R 30400363 intergenic not near genes chr3R 30404500 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-91 1066 chr3R 30456401 30456423 chr3R 30456481 30456503 6 80 0.0 2.0 1.0 3.0 102 chr3R 30456401 intergenic CG2224 - chr3R 30456452 3` UTR CG2224 - chr3R 30456503 3` UTR CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-91 1067 chr3R 30458019 30458048 chr3R 30458096 30458118 4 76 2.0 4.0 3.0 1.0 99 chr3R 30458019 intron CG2224 - chr3R 30458068 intron CG2224 - chr3R 30458118 intron CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-91 1068 chr3R 30480472 30480511 chr3R 30482940 30482979 jockey 19 2466 3.5 1.0 2.2 5.9 2507 chr3R 30480472 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_19_30480001 chr3R_30480001 RAL-91 1069 chr3R 30485044 30485069 chr3R 30485120 30485145 8 75 3.5 0.5 2.0 2.7 101 chr3R 30485044 intron PH4alphaEFB + chr3R 30485094 intron PH4alphaEFB + chr3R 30485145 intron PH4alphaEFB + chr3R_8_30485001 chr3R_30485001 RAL-91 1070 chr3R 30627603 30627638 chr3R 30627682 30627718 12 77 4.0 4.5 4.2 2.3 115 chr3R 30627603 3` UTR CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_12_30625001 chr3R_30625001 RAL-91 1071 chr3R 30679518 30679547 chr3R 30686987 30687016 blood 5 7469 4.0 1.0 2.5 1.4 7498 chr3R 30679518 intergenic not near genes chr3R 30683267 intergenic not near genes chr3R 30687016 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-91 1072 chr3R 30994125 30994154 chr3R 30994235 30994264 9 110 2.0 0.0 1.0 4.5 139 chr3R 30994125 intron 5-HT7 - chr3R 30994194 intron 5-HT7 - chr3R 30994264 intron 5-HT7 - chr3R_9_30990001 chr3R_30990001 RAL-91 1073 chr3R 31026490 31026521 chr3R 31026570 31026602 5 76 0.5 2.0 1.2 2.3 112 chr3R 31026490 intergenic not near genes chr3R 31026546 intergenic not near genes chr3R 31026602 intergenic not near genes chr3R_5_31025001 chr3R_31025001 RAL-91 1074 chr3R 31042114 31042144 chr3R 31042201 31042231 6 87 4.0 3.0 3.5 1.3 117 chr3R 31042114 intron CanA1 + chr3R 31042172 intron CanA1 + chr3R 31042231 intron CanA1 + chr3R_6_31040001 chr3R_31040001 RAL-91 1075 chr3R 31070847 31070879 chr3R 31070927 31070959 6 77 1.0 4.5 2.8 1.6 112 chr3R 31070847 intron Sox100B + chr3R 31070903 intron Sox100B + chr3R 31070959 intron Sox100B + chr3R_6_31070001 chr3R_31070001 RAL-91 1076 chr3R 31279372 31279398 chr3R 31285563 31285589 diver 6 6190 3.0 1.5 2.2 1.9 6217 chr3R 31279372 intergenic not near genes chr3R 31282480 intergenic not near genes chr3R 31285589 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-91 1077 chr3R 31413094 31413123 chr3R 31418291 31418319 copia 6 5198 2.5 1.0 1.8 2.1 5225 chr3R 31413094 intron Gprk2 + chr3R 31415706 intron Gprk2 + chr3R 31418319 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 RAL-91 1078 chr3R 31430720 31430744 chr3R 31430807 31430823 12 85 1.5 2.5 2.0 4.0 103 chr3R 31430720 intron Gprk2 + chr3R 31430772 intron Gprk2 + chr3R 31430823 intron Gprk2 + chr3R_12_31430001 chr3R_31430001 RAL-91 1079 chr3R 31435364 31435385 chr3R 31435515 31435535 7 151 3.0 3.5 3.2 1.7 171 chr3R 31435364 intron Gprk2 + chr3R 31435450 intron Gprk2 + chr3R 31435535 intron Gprk2 + chr3R_7_31435001 chr3R_31435001 RAL-91 1080 chr3R 31435553 31435578 chr3R 31435815 31435830 12 257 4.0 6.0 5.0 2.0 277 chr3R 31435553 intron Gprk2 + chr3R 31435692 intron Gprk2 + chr3R 31435830 intron Gprk2 + chr3R_12_31435001 chr3R_31435001 RAL-91 1081 chr3R 31530842 31530849 chr3R 31531169 31531176 4 327 1.0 3.0 2.0 1.3 334 chr3R 31530842 intergenic not near genes chr3R 31531009 intergenic not near genes chr3R 31531176 intergenic not near genes chr3R_4_31530001 chr3R_31530001 RAL-91 1082 chr3R 31538485 31538513 chr3R 31538563 31538591 4 78 0.5 1.0 0.8 2.2 106 chr3R 31538485 intergenic not near genes chr3R 31538538 intergenic not near genes chr3R 31538591 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-91 1083 chr3R 31691535 31691561 chr3R 31696301 31696326 Doc 6 4765 4.0 7.0 5.5 0.9 4791 chr3R 31691535 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696326 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-91 1084 chr3R 31768865 31768893 chr3R 31769146 31769175 6 282 33.0 19.0 26.0 0.2 310 chr3R 31768865 5` UTR pncr017:3R + chr3R 31769020 5` UTR pncr017:3R + chr3R 31769175 5` UTR pncr017:3R + chr3R_6_31765001 chr3R_31765001 RAL-91 1085 chr3R 31800319 31800334 chr3R 31800432 31800446 4 111 8.0 3.5 5.8 0.6 127 chr3R 31800319 exon CG42233 - chr3R 31800382 exon CG42233 - chr3R 31800446 exon CG42233 - chr3R_4_31800001 chr3R_31800001 RAL-91 1086 chr3R 31800335 31800352 chr3R 31800431 31800448 9 109 5.0 3.5 4.2 1.7 113 chr3R 31800335 exon CG42233 - chr3R 31800392 exon CG42233 - chr3R 31800448 exon CG42233 - chr3R_9_31800001 chr3R_31800001 RAL-91 1087 chrX 443498 443525 chrX 443580 443607 6 78 1.0 0.0 0.5 4.0 109 chrX 443498 intron CG32816 - chrX 443552 intron CG32816 - chrX 443607 intron CG32816 - chrX_6_440001 chrX_440001 RAL-91 1088 chrX 450374 450390 chrX 450452 450467 4 78 0.5 2.5 1.5 1.6 93 chrX 450374 intron CG32816 - chrX 450420 intron CG32816 - chrX 450467 intron CG32816 - chrX_4_450001 chrX_450001 RAL-91 1089 chrX 569344 569362 chrX 569459 569477 7 114 2.5 1.5 2.0 2.3 133 chrX 569344 intron Appl + chrX 569410 intron Appl + chrX 569477 intron Appl + chrX_7_565001 chrX_565001 RAL-91 1090 chrX 569365 569374 chrX 569458 569489 6 106 2.0 1.0 1.5 2.4 124 chrX 569365 intron Appl + chrX 569427 intron Appl + chrX 569489 intron Appl + chrX_6_565001 chrX_565001 RAL-91 1091 chrX 611134 611166 chrX 611224 611256 6 90 2.5 0.5 1.5 2.4 122 chrX 611134 intron CG13366 - chrX 611195 intron CG13366 - chrX 611256 intron CG13366 - chrX_6_610001 chrX_610001 RAL-91 1092 chrX 667648 667672 chrX 667730 667756 8 84 0.5 2.0 1.2 3.6 108 chrX 667648 intergenic not near genes chrX 667702 intergenic not near genes chrX 667756 intergenic not near genes chrX_8_665001 chrX_665001 RAL-91 1093 chrX 670271 670278 chrX 670350 670358 5 80 1.0 2.5 1.8 1.8 87 chrX 670271 intergenic not near genes chrX 670314 intergenic not near genes chrX 670358 intergenic not near genes chrX_5_670001 chrX_670001 RAL-91 1094 chrX 680840 680867 chrX 680921 680950 8 82 1.5 2.5 2.0 2.7 110 chrX 680840 intergenic not near genes chrX 680895 intergenic not near genes chrX 680950 intergenic not near genes chrX_8_680001 chrX_680001 RAL-91 1095 chrX 706803 706817 chrX 707167 707181 5 362 0.0 0.5 0.2 4.2 378 chrX 706803 intron sdk + chrX 706992 intron sdk + chrX 707181 intron sdk + chrX_5_705001 chrX_705001 RAL-91 1096 chrX 778126 778155 chrX 778215 778245 9 89 2.0 0.0 1.0 4.5 119 chrX 778126 intron fz3 + chrX 778186 intron fz3 + chrX 778245 intron fz3 + chrX_9_775001 chrX_775001 RAL-91 1097 chrX 906704 906718 chrX 908492 908507 S-element 6 1789 1.0 1.5 1.2 2.7 1803 chrX 906704 intron CG43867 - chrX 907606 intron CG43867 - chrX 908507 intron CG43867 - chrX_6_905001 chrX_905001 RAL-91 1098 chrX 918375 918402 chrX 918459 918486 5 82 3.0 4.5 3.8 1.0 111 chrX 918375 intron CG43867 - chrX 918430 intron CG43867 - chrX 918486 intron CG43867 - chrX_5_915001 chrX_915001 RAL-91 1099 chrX 1022739 1022763 chrX 1022872 1022896 8 131 2.0 3.5 2.8 2.1 157 chrX 1022739 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1022818 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1022896 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX_8_1020001 chrX_1020001 RAL-91 1100 chrX 1127418 1127446 chrX 1127495 1127523 6 76 2.5 3.0 2.8 1.6 105 chrX 1127418 intron CG3655 - chrX 1127470 intron CG3655 - chrX 1127523 intron CG3655 - chrX_6_1125001 chrX_1125001 RAL-91 1101 chrX 1357772 1357807 chrX 1367942 1367977 Doc 6 10170 4.0 2.0 3.0 1.5 10205 chrX 1357772 intergenic png - chrX 1362874 intergenic not near genes chrX 1367977 intergenic not near genes chrX_6_1360001 chrX_1360001 RAL-91 1102 chrX 1402263 1402292 chrX 1402621 1402650 9 356 2.0 1.5 1.8 3.2 387 chrX 1402263 intergenic not near genes chrX 1402456 intergenic not near genes chrX 1402650 intergenic not near genes chrX_9_1400001 chrX_1400001 RAL-91 1103 chrX 1604149 1604177 chrX 1604229 1604232 6 72 4.0 1.5 2.8 1.6 83 chrX 1604149 intron,intron Mur2B -,br + chrX 1604190 intron,intron Mur2B -,br + chrX 1604232 intron,intron Mur2B -,br + chrX_6_1600001 chrX_1600001 RAL-91 1104 chrX 1627987 1628002 chrX 1635444 1635469 gtwin 5 7463 4.0 4.5 4.2 1.0 7482 chrX 1627987 intron,intron Mur2B -,br + chrX 1631728 intron,intron Mur2B -,br + chrX 1635469 intron,intron Mur2B -,br + chrX_5_1630001 chrX_1630001 RAL-91 1105 chrX 1674860 1674873 chrX 1674935 1674949 5 76 1.0 0.0 0.5 3.3 89 chrX 1674860 3` UTR CG32809 - chrX 1674904 3` UTR CG32809 - chrX 1674949 3` UTR CG32809 - chrX_5_1670001 chrX_1670001 RAL-91 1106 chrX 1954886 1954919 chrX 1962826 1962858 Stalker2 8 7935 4.5 2.0 3.2 1.9 7972 chrX 1954886 intron Hr4 + chrX 1958872 intron Hr4 + chrX 1962858 intron Hr4 + chrX_8_1955001 chrX_1955001 RAL-91 1107 chrX 1974286 1974315 chrX 1974364 1974392 8 75 1.0 2.5 1.8 2.9 106 chrX 1974286 intron Hr4 + chrX 1974339 intron Hr4 + chrX 1974392 intron Hr4 + chrX_8_1970001 chrX_1970001 RAL-91 1108 chrX 1982797 1982828 chrX 1982902 1982933 18 104 4.0 3.0 3.5 4.0 136 chrX 1982797 intron Hr4 + chrX 1982865 intron Hr4 + chrX 1982933 intron Hr4 + chrX_18_1980001 chrX_1980001 RAL-91 1109 chrX 2181110 2181122 chrX 2181188 2181200 4 77 2.0 3.0 2.5 1.1 90 chrX 2181110 intergenic pn +,Cyp4ae1 +,CR44690 - chrX 2181155 intergenic pn +,Cyp4ae1 +,CR44690 - chrX 2181200 intergenic pn +,Cyp4ae1 +,CR44690 - chrX_4_2180001 chrX_2180001 RAL-91 1110 chrX 2399836 2399866 chrX 2408189 2408192 roo 10 8343 2.5 0.5 1.5 4.0 8356 chrX 2399836 intergenic not near genes chrX 2404014 intergenic not near genes chrX 2408192 intergenic not near genes chrX_10_2400001 chrX_2400001 RAL-91 1111 chrX 2468800 2468827 chrX 2469027 2469054 5 227 1.0 0.5 0.8 2.8 254 chrX 2468800 intron boi - chrX 2468927 intron boi - chrX 2469054 intron boi - chrX_5_2465001 chrX_2465001 RAL-91 1112 chrX 2578810 2578846 chrX 2578902 2578938 7 92 1.0 2.5 1.8 2.5 128 chrX 2578810 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578938 intergenic Vha36-3 -,Pdfr + chrX_7_2575001 chrX_2575001 RAL-91 1113 chrX 2888111 2888143 chrX 2888189 2888221 8 78 1.5 2.0 1.8 2.9 110 chrX 2888111 intron kirre + chrX 2888166 intron kirre + chrX 2888221 intron kirre + chrX_8_2885001 chrX_2885001 RAL-91 1114 chrX 2912172 2912172 chrX 16983076 16983077 6 14070904 10.5 3.0 6.8 0.8 14070905 chrX 2912172 intron kirre + chrX 9947624 intergenic not near genes chrX 16983077 intron CG45002 - chrX_6_9945001 chrX_9945001 RAL-91 1115 chrX 3881273 3881304 chrX 3881409 3881442 7 138 0.5 1.5 1.0 3.5 169 chrX 3881273 intron VhaAC39-1 + chrX 3881358 intron VhaAC39-1 + chrX 3881442 intron VhaAC39-1 + chrX_7_3880001 chrX_3880001 RAL-91 1116 chrX 3986866 3986891 chrX 3994499 3994523 412 6 7632 3.0 2.0 2.5 1.7 7657 chrX 3986866 intergenic not near genes chrX 3990694 intergenic not near genes chrX 3994523 intergenic not near genes chrX_6_3990001 chrX_3990001 RAL-91 1117 chrX 4101885 4101898 chrX 4101965 4101978 6 79 0.5 5.0 2.8 1.6 93 chrX 4101885 exon CG15375 + chrX 4101932 exon CG15375 + chrX 4101978 exon CG15375 + chrX_6_4100001 chrX_4100001 RAL-91 1118 chrX 4186821 4186821 chrX 9312363 9312364 5 5125543 9.0 8.0 8.5 0.5 5125543 chrX 4186821 intron Fas2 - chrX 6749592 intron CG14439 + chrX 9312364 intergenic not near genes chrX_5_6745001 chrX_6745001 RAL-91 1119 chrX 4252947 4252971 chrX 4253034 4253059 4 88 1.5 1.0 1.2 1.8 112 chrX 4252947 intergenic CG15576 - chrX 4253003 intergenic CG15576 - chrX 4253059 intergenic CG15576 - chrX_4_4250001 chrX_4250001 RAL-91 1120 chrX 4515836 4515859 chrX 4515914 4515937 9 78 1.0 2.5 1.8 3.2 101 chrX 4515836 intron CR32773 - chrX 4515886 intron CR32773 - chrX 4515937 intron CR32773 - chrX_9_4515001 chrX_4515001 RAL-91 1121 chrX 4557833 4557864 chrX 4557910 4557940 8 76 2.5 1.5 2.0 2.7 107 chrX 4557833 intron CR32773 - chrX 4557886 intron CR32773 - chrX 4557940 intron CR32773 - chrX_8_4555001 chrX_4555001 RAL-91 1122 chrX 4638651 4638663 chrX 4638783 4638800 8 136 4.0 3.0 3.5 1.8 149 chrX 4638651 exon pon + chrX 4638726 3` UTR pon + chrX 4638800 3` UTR pon + chrX_8_4635001 chrX_4635001 RAL-91 1123 chrX 4723579 4723585 chrX 4723654 4723665 7 78 10.0 4.5 7.2 0.9 86 chrX 4723579 intron Proc-R + chrX 4723622 intron Proc-R + chrX 4723665 intron Proc-R + chrX_7_4720001 chrX_4720001 RAL-91 1124 chrX 4731824 4731831 chrX 4736917 4736924 jockey 4 5093 2.5 4.0 3.2 1.0 5100 chrX 4731824 intergenic not near genes chrX 4734374 intergenic not near genes chrX 4736924 intergenic not near genes chrX_4_4730001 chrX_4730001 RAL-91 1125 chrX 4763249 4763280 chrX 4763737 4763768 Stalker4 7 487 0.5 1.0 0.8 3.9 519 chrX 4763249 intergenic not near genes chrX 4763508 intergenic not near genes chrX 4763768 intergenic not near genes chrX_7_4760001 chrX_4760001 RAL-91 1126 chrX 4792382 4792406 chrX 4792815 4792838 jockey 6 430 1.5 2.5 2.0 2.0 456 chrX 4792382 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792838 intergenic not near genes chrX_6_4790001 chrX_4790001 RAL-91 1127 chrX 4827219 4827240 chrX 4827306 4827327 4 86 2.0 1.0 1.5 1.6 108 chrX 4827219 intergenic CG12682 + chrX 4827273 intergenic CG12682 + chrX 4827327 intergenic CG12682 + chrX_4_4825001 chrX_4825001 RAL-91 1128 chrX 4900701 4900722 chrX 4900909 4900930 8 208 2.0 2.5 2.2 2.5 229 chrX 4900701 intron CG42594 + chrX 4900816 intron CG42594 + chrX 4900930 intron CG42594 + chrX_8_4900001 chrX_4900001 RAL-91 1129 chrX 5096280 5096283 chrX 5103840 5103847 springer 4 7563 4.5 1.0 2.8 1.1 7567 chrX 5096280 intron,intron CG15465 +,rg + chrX 5100064 intron,intron CG15465 +,rg + chrX 5103847 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-91 1130 chrX 5473590 5473609 chrX 5473665 5473683 6 75 1.5 2.5 2.0 2.0 93 chrX 5473590 intron SPR + chrX 5473636 intron SPR + chrX 5473683 intron SPR + chrX_6_5470001 chrX_5470001 RAL-91 1131 chrX 5792636 5792739 chrX 5792569 5792821 4 78 2.0 8.0 5.0 0.7 185 chrX 5792636 exon CG12239 + chrX 5792728 exon CG12239 + chrX 5792821 exon CG12239 + chrX_4_5790001 chrX_5790001 RAL-91 1132 chrX 5798861 5798892 chrX 5799023 5799053 7 162 0.5 2.5 1.5 2.8 192 chrX 5798861 intergenic not near genes chrX 5798957 intergenic not near genes chrX 5799053 intergenic not near genes chrX_7_5795001 chrX_5795001 RAL-91 1133 chrX 5883811 5883837 chrX 5884050 5884078 pogo 4 240 1.5 0.0 0.8 2.2 267 chrX 5883811 intron CR45668 - chrX 5883944 intron CR45668 - chrX 5884078 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-91 1134 chrX 6003280 6003301 chrX 6003361 6003379 5 80 0.5 2.5 1.5 2.0 99 chrX 6003280 intron CR44498 + chrX 6003330 intron CR44498 + chrX 6003379 intron CR44498 + chrX_5_6000001 chrX_6000001 RAL-91 1135 chrX 6118698 6118733 chrX 6118778 6118794 8 78 0.0 1.0 0.5 5.3 96 chrX 6118698 intron Ca-alpha1T - chrX 6118746 intron Ca-alpha1T - chrX 6118794 intron Ca-alpha1T - chrX_8_6115001 chrX_6115001 RAL-91 1136 chrX 6171606 6171616 chrX 6179038 6179049 Quasimodo 4 7433 3.0 3.0 3.0 1.0 7443 chrX 6171606 intron Ca-alpha1T - chrX 6175328 intron Ca-alpha1T - chrX 6179049 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-91 1137 chrX 6314421 6314446 chrX 6314493 6314522 4 75 0.5 0.5 0.5 2.7 101 chrX 6314421 intron CG15894 + chrX 6314472 intron CG15894 + chrX 6314522 intron CG15894 + chrX_4_6310001 chrX_6310001 RAL-91 1138 chrX 6335213 6335240 chrX 6337722 6337750 Tirant 4 2509 0.5 0.5 0.5 2.7 2537 chrX 6335213 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337750 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-91 1139 chrX 6392877 6392904 chrX 6397642 6397669 Doc 9 4765 0.5 1.5 1.0 4.5 4792 chrX 6392877 intergenic not near genes chrX 6395273 intergenic not near genes chrX 6397669 intergenic not near genes chrX_9_6395001 chrX_6395001 RAL-91 1140 chrX 6412443 6412469 chrX 6412549 6412572 9 104 1.5 3.0 2.2 2.8 129 chrX 6412443 intergenic not near genes chrX 6412508 intergenic not near genes chrX 6412572 intergenic not near genes chrX_9_6410001 chrX_6410001 RAL-91 1141 chrX 6539914 6539950 chrX 6540016 6540024 8 98 0.5 0.5 0.5 5.3 110 chrX 6539914 intergenic not near genes chrX 6539969 intergenic not near genes chrX 6540024 intergenic not near genes chrX_8_6535001 chrX_6535001 RAL-91 1142 chrX 6562832 6562847 chrX 6571312 6571329 Tirant 6 8481 1.5 5.0 3.2 1.4 8497 chrX 6562832 intron CG34417 + chrX 6567080 intron CG34417 + chrX 6571329 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-91 1143 chrX 6737518 6737547 chrX 6737600 6737626 10 81 2.0 4.0 3.0 2.5 108 chrX 6737518 intron CG3168 - chrX 6737572 intron CG3168 - chrX 6737626 intron CG3168 - chrX_10_6735001 chrX_6735001 RAL-91 1144 chrX 6897577 6897709 chrX 6897655 6897819 5 96 1.0 1.0 1.0 2.5 242 chrX 6897577 intergenic not near genes chrX 6897698 intergenic not near genes chrX 6897819 intergenic not near genes chrX_5_6895001 chrX_6895001 RAL-91 1145 chrX 7023608 7023627 chrX 7030998 7031017 Tabor 5 7389 4.0 2.5 3.2 1.2 7409 chrX 7023608 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031017 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-91 1146 chrX 7069803 7069833 chrX 7069881 7069913 7 80 0.5 0.5 0.5 4.7 110 chrX 7069803 5` UTR CG4607 + chrX 7069858 5` UTR CG4607 + chrX 7069913 5` UTR CG4607 + chrX_7_7065001 chrX_7065001 RAL-91 1147 chrX 7125245 7125278 chrX 7134404 7134437 roo 5 9159 0.0 1.5 0.8 2.8 9192 chrX 7125245 intergenic not near genes chrX 7129841 intergenic not near genes chrX 7134437 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-91 1148 chrX 7322900 7322928 chrX 7322984 7323011 6 84 2.0 0.5 1.2 2.7 111 chrX 7322900 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7322956 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7323011 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX_6_7320001 chrX_7320001 RAL-91 1149 chrX 7702904 7702920 chrX 7703343 7703356 jockey 6 438 4.0 1.0 2.5 1.7 452 chrX 7702904 intron CHES-1-like - chrX 7703130 intron CHES-1-like - chrX 7703356 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-91 1150 chrX 8085573 8085602 chrX 8085659 8085688 11 86 1.5 0.5 1.0 5.5 115 chrX 8085573 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085688 intron,5` UTR CG2256 -,CR45535 + chrX_11_8085001 chrX_8085001 RAL-91 1151 chrX 8092286 8092320 chrX 8092370 8092404 7 85 0.5 1.0 0.8 3.9 118 chrX 8092286 intron Ubc-E2H - chrX 8092345 intron Ubc-E2H - chrX 8092404 intron Ubc-E2H - chrX_7_8090001 chrX_8090001 RAL-91 1152 chrX 8536772 8536780 chrX 8536848 8536856 4 76 3.0 2.5 2.8 1.1 84 chrX 8536772 intron Nrg + chrX 8536814 intron Nrg + chrX 8536856 intron Nrg + chrX_4_8535001 chrX_8535001 RAL-91 1153 chrX 8668650 8668661 chrX 8668987 8668998 4 337 0.5 0.0 0.2 3.3 348 chrX 8668650 intergenic not near genes chrX 8668824 intergenic not near genes chrX 8668998 intergenic not near genes chrX_4_8665001 chrX_8665001 RAL-91 1154 chrX 8708700 8708715 chrX 8708883 8708898 9 183 9.0 5.0 7.0 1.1 198 chrX 8708700 intergenic not near genes chrX 8708799 intergenic not near genes chrX 8708898 intergenic not near genes chrX_9_8705001 chrX_8705001 RAL-91 1155 chrX 8730448 8730466 chrX 8730524 8730542 7 76 0.0 4.5 2.2 2.2 94 chrX 8730448 intergenic not near genes chrX 8730495 intergenic not near genes chrX 8730542 intergenic not near genes chrX_7_8730001 chrX_8730001 RAL-91 1156 chrX 8922336 8922359 chrX 8922770 8922793 jockey 4 434 2.0 1.0 1.5 1.6 457 chrX 8922336 intron rdgA + chrX 8922564 intron rdgA + chrX 8922793 intron rdgA + chrX_4_8920001 chrX_8920001 RAL-91 1157 chrX 9337941 9337972 chrX 9338032 9338064 9 90 2.5 4.5 3.5 2.0 123 chrX 9337941 intron CG34449 - chrX 9338002 intron CG34449 - chrX 9338064 exon CG34449 - chrX_9_9335001 chrX_9335001 RAL-91 1158 chrX 9393940 9393971 chrX 9394195 9394227 5 255 1.0 2.0 1.5 2.0 287 chrX 9393940 intron mgl - chrX 9394084 intron mgl - chrX 9394227 intron mgl - chrX_5_9390001 chrX_9390001 RAL-91 1159 chrX 9478259 9478271 chrX 9478562 9478574 4 303 1.0 1.0 1.0 2.0 315 chrX 9478259 intron mgl - chrX 9478416 intron mgl - chrX 9478574 intron mgl - chrX_4_9475001 chrX_9475001 RAL-91 1160 chrX 9575808 9575823 chrX 9576120 9576147 mdg3 6 318 3.0 3.0 3.0 1.5 339 chrX 9575808 intron,exon CG32699 -,CG42395 - chrX 9575978 intron,intron CG32699 -,CG42395 - chrX 9576147 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-91 1161 chrX 9577219 9577241 chrX 9577927 9577949 4 708 2.5 2.5 2.5 1.1 730 chrX 9577219 intron CG32699 - chrX 9577584 intron CG32699 - chrX 9577949 intron CG32699 - chrX_4_9575001 chrX_9575001 RAL-91 1162 chrX 9791863 9791896 chrX 9791960 9791993 4 97 0.5 0.5 0.5 2.7 130 chrX 9791863 intron CG32698 + chrX 9791928 intron CG32698 + chrX 9791993 intron CG32698 + chrX_4_9790001 chrX_9790001 RAL-91 1163 chrX 9837812 9837831 chrX 9839741 9839762 6 1930 17.0 16.0 16.5 0.3 1950 chrX 9837812 intron CG32698 + chrX 9838787 intron CG32698 + chrX 9839762 intron CG32698 + chrX_6_9835001 chrX_9835001 RAL-91 1164 chrX 8382094 8382094 chrX 9845361 9845361 6 1463267 10.5 11.0 10.8 0.5 1463267 chrX 8382094 intergenic not near genes chrX 9113728 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_6_9110001 chrX_9110001 RAL-91 1165 chrX 10154288 10154309 chrX 10154364 10154385 4 76 1.0 1.0 1.0 2.0 97 chrX 10154288 intron,intron CR44894 -,CG12645 + chrX 10154336 intron,intron CR44894 -,CG12645 + chrX 10154385 intron,exon CR44894 -,CG12645 + chrX_4_10150001 chrX_10150001 RAL-91 1166 chrX 10216846 10216852 chrX 10216926 10216927 4 78 7.0 8.0 7.5 0.5 81 chrX 10216846 3` UTR l(1)G0230 + chrX 10216886 3` UTR l(1)G0230 + chrX 10216927 3` UTR l(1)G0230 + chrX_4_10215001 chrX_10215001 RAL-91 1167 chrX 10550336 10550359 chrX 10550414 10550437 4 78 0.5 0.5 0.5 2.7 101 chrX 10550336 intron spri - chrX 10550386 intron spri - chrX 10550437 intron spri - chrX_4_10550001 chrX_10550001 RAL-91 1168 chrX 10550860 10550870 chrX 10552326 10552337 hobo 4 1467 2.5 1.5 2.0 1.3 1477 chrX 10550860 intron spri - chrX 10551598 intron spri - chrX 10552337 intron spri - chrX_4_10550001 chrX_10550001 RAL-91 1169 chrX 10811877 10811887 chrX 10811967 10811979 6 91 1.0 0.5 0.8 3.3 102 chrX 10811877 intron Imp - chrX 10811928 intron Imp - chrX 10811979 intron Imp - chrX_6_10810001 chrX_10810001 RAL-91 1170 chrX 10826192 10826223 chrX 10826430 10826460 4 236 0.5 2.0 1.2 1.8 268 chrX 10826192 intergenic not near genes chrX 10826326 intergenic not near genes chrX 10826460 intergenic not near genes chrX_4_10825001 chrX_10825001 RAL-91 1171 chrX 10933919 10933941 chrX 10934007 10934029 4 88 0.0 2.5 1.2 1.8 110 chrX 10933919 intron Myo10A + chrX 10933974 intron Myo10A + chrX 10934029 intron Myo10A + chrX_4_10930001 chrX_10930001 RAL-91 1172 chrX 11082187 11082215 chrX 11082541 11082569 10 354 3.0 1.5 2.2 3.1 382 chrX 11082187 intron sev - chrX 11082378 intron sev - chrX 11082569 intron sev - chrX_10_11080001 chrX_11080001 RAL-91 1173 chrX 11205293 11205322 chrX 11205369 11205398 5 76 1.0 2.0 1.5 2.0 105 chrX 11205293 intergenic not near genes chrX 11205346 intergenic not near genes chrX 11205398 intergenic not near genes chrX_5_11205001 chrX_11205001 RAL-91 1174 chrX 11254169 11254197 chrX 11254280 11254308 4 111 1.0 3.5 2.2 1.2 139 chrX 11254169 intron CG44422 - chrX 11254238 intron CG44422 - chrX 11254308 intron CG44422 - chrX_4_11250001 chrX_11250001 RAL-91 1175 chrX 11268567 11268584 chrX 11270059 11270077 hopper2 6 1492 0.5 0.0 0.2 5.0 1510 chrX 11268567 intron CG44422 - chrX 11269322 intron CG44422 - chrX 11270077 intron CG44422 - chrX_6_11265001 chrX_11265001 RAL-91 1176 chrX 11784933 11784965 chrX 11785010 11785022 6 74 2.0 1.5 1.8 2.1 89 chrX 11784933 intergenic not near genes chrX 11784978 intergenic not near genes chrX 11785022 intergenic not near genes chrX_6_11780001 chrX_11780001 RAL-91 1177 chrX 12069059 12069088 chrX 12069146 12069173 4 86 2.5 2.5 2.5 1.1 114 chrX 12069059 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069116 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069173 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX_4_12065001 chrX_12065001 RAL-91 1178 chrX 12094037 12094058 chrX 12094128 12094150 5 90 0.0 1.0 0.5 3.3 113 chrX 12094037 intron,intron CR43960 +,Ten-a + chrX 12094094 intron,intron CR43960 +,Ten-a + chrX 12094150 intron,intron CR43960 +,Ten-a + chrX_5_12090001 chrX_12090001 RAL-91 1179 chrX 12176743 12176767 chrX 12176819 12176842 7 76 0.5 5.0 2.8 1.8 99 chrX 12176743 intron,3` UTR Ten-a +,CG1924 - chrX 12176792 intron,3` UTR Ten-a +,CG1924 - chrX 12176842 intron,3` UTR Ten-a +,CG1924 - chrX_7_12175001 chrX_12175001 RAL-91 1180 chrX 12266684 12266704 chrX 12266839 12266859 4 155 3.0 0.0 1.5 1.6 175 chrX 12266684 intron Ten-a + chrX 12266772 intron Ten-a + chrX 12266859 intron Ten-a + chrX_4_12265001 chrX_12265001 RAL-91 1181 chrX 12465474 12465497 chrX 12465550 12465573 6 76 3.5 0.5 2.0 2.0 99 chrX 12465474 exon CG42258 + chrX 12465524 intron CG42258 + chrX 12465573 intron CG42258 + chrX_6_12465001 chrX_12465001 RAL-91 1182 chrX 12532652 12532660 chrX 12532797 12532806 4 146 0.5 0.0 0.2 3.3 154 chrX 12532652 intron CG43921 - chrX 12532729 intron CG43921 - chrX 12532806 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-91 1183 chrX 12668378 12668410 chrX 12668670 12668702 5 292 2.0 1.0 1.5 2.0 324 chrX 12668378 intron Tis11 + chrX 12668540 intron Tis11 + chrX 12668702 intron Tis11 + chrX_5_12665001 chrX_12665001 RAL-91 1184 chrX 13278159 13278176 chrX 13278242 13278259 4 83 1.5 0.0 0.8 2.2 100 chrX 13278159 intron HDAC4 - chrX 13278209 intron HDAC4 - chrX 13278259 intron HDAC4 - chrX_4_13275001 chrX_13275001 RAL-91 1185 chrX 13374837 13374857 chrX 13374916 13374937 5 80 0.5 0.5 0.5 3.3 100 chrX 13374837 intron CG1640 + chrX 13374887 intron CG1640 + chrX 13374937 intron CG1640 + chrX_5_13370001 chrX_13370001 RAL-91 1186 chrX 13394014 13394040 chrX 13394260 13394283 7 244 4.0 2.5 3.2 1.7 269 chrX 13394014 intergenic not near genes chrX 13394148 intergenic not near genes chrX 13394283 intergenic not near genes chrX_7_13390001 chrX_13390001 RAL-91 1187 chrX 13429471 13429487 chrX 13430620 13430636 jockey 6 1149 0.0 4.0 2.0 2.0 1165 chrX 13429471 intergenic not near genes chrX 13430054 intergenic not near genes chrX 13430636 intergenic not near genes chrX_6_13430001 chrX_13430001 RAL-91 1188 chrX 13587323 13587344 chrX 13587588 13587608 4 265 1.0 0.5 0.8 2.2 285 chrX 13587323 intron Tango13 + chrX 13587466 intron Tango13 + chrX 13587608 intron Tango13 + chrX_4_13585001 chrX_13585001 RAL-91 1189 chrX 13937974 13938007 chrX 13941245 13941275 I-element 8 3270 2.0 3.0 2.5 2.3 3301 chrX 13937974 intron mamo - chrX 13939624 intron mamo - chrX 13941275 intron mamo - chrX_8_13935001 chrX_13935001 RAL-91 1190 chrX 14105047 14105056 chrX 14114189 14114205 roo 5 9149 3.5 5.5 4.5 0.9 9158 chrX 14105047 intergenic not near genes chrX 14109626 intergenic not near genes chrX 14114205 5` UTR CR44657 + chrX_5_14105001 chrX_14105001 RAL-91 1191 chrX 14131486 14131518 chrX 14131567 14131599 9 80 1.0 2.0 1.5 3.6 113 chrX 14131486 intergenic not near genes chrX 14131542 intergenic not near genes chrX 14131599 intergenic not near genes chrX_9_14130001 chrX_14130001 RAL-91 1192 chrX 14333287 14333305 chrX 14333368 14333374 5 79 1.0 3.5 2.2 1.6 87 chrX 14333287 intron dpr8 + chrX 14333330 intron dpr8 + chrX 14333374 intron dpr8 + chrX_5_14330001 chrX_14330001 RAL-91 1193 chrX 14500506 14500525 chrX 14500607 14500626 4 100 0.0 2.5 1.2 1.8 120 chrX 14500506 intergenic not near genes chrX 14500566 intergenic not near genes chrX 14500626 intergenic not near genes chrX_4_14500001 chrX_14500001 RAL-91 1194 chrX 14531359 14531383 chrX 14531448 14531472 8 89 2.0 0.0 1.0 4.0 113 chrX 14531359 intergenic not near genes chrX 14531416 intergenic not near genes chrX 14531472 intergenic not near genes chrX_8_14530001 chrX_14530001 RAL-91 1195 chrX 14767946 14767966 chrX 14768026 14768026 4 75 1.5 1.5 1.5 1.6 80 chrX 14767946 intergenic not near genes chrX 14767986 intergenic not near genes chrX 14768026 intergenic not near genes chrX_4_14765001 chrX_14765001 RAL-91 1196 chrX 14806767 14806786 chrX 14806855 14806874 5 88 0.0 0.0 0.0 5.0 107 chrX 14806767 intron rut - chrX 14806820 intron rut - chrX 14806874 intron rut - chrX_5_14805001 chrX_14805001 RAL-91 1197 chrX 15019092 15019097 chrX 19640962 19640966 5 4621869 4.0 5.5 4.8 0.9 4621874 chrX 15019092 intron hiw - chrX 17330029 intergenic not near genes chrX 19640966 intergenic Rcd-1 +,CG12237 - chrX_5_17330001 chrX_17330001 RAL-91 1198 chrX 15237686 15237710 chrX 15237780 15237785 8 89 1.0 2.0 1.5 3.2 99 chrX 15237686 intergenic not near genes chrX 15237736 intergenic not near genes chrX 15237785 intergenic not near genes chrX_8_15235001 chrX_15235001 RAL-91 1199 chrX 15413049 15413086 chrX 15417351 15417387 Juan 5 4302 5.0 1.5 3.2 1.2 4338 chrX 15413049 intron Cngl - chrX 15415218 intron Cngl - chrX 15417387 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-91 1200 chrX 15435688 15435705 chrX 15436118 15436138 rover 6 432 0.0 4.5 2.2 1.9 450 chrX 15435688 intron Cngl - chrX 15435913 intron Cngl - chrX 15436138 intron Cngl - chrX_6_15435001 chrX_15435001 RAL-91 1201 chrX 15671200 15671210 chrX 15671287 15671297 4 87 1.0 0.0 0.5 2.7 97 chrX 15671200 intergenic CG15646 - chrX 15671248 intergenic CG15646 - chrX 15671297 intergenic CG15646 - chrX_4_15670001 chrX_15670001 RAL-91 1202 chrX 13638057 13638068 chrX 16071487 16071493 4 2433426 4.0 7.5 5.8 0.6 2433436 chrX 13638057 intron NFAT + chrX 14854775 intron,exon Flo2 +,CG9519 - chrX 16071493 exon Nipsnap - chrX_4_14850001 chrX_14850001 RAL-91 1203 chrX 16329437 16329442 chrX 16329520 16329524 5 82 0.0 7.0 3.5 1.1 87 chrX 16329437 intron CG9919 - chrX 16329480 intron CG9919 - chrX 16329524 exon CG9919 - chrX_5_16325001 chrX_16325001 RAL-91 1204 chrX 16689622 16689655 chrX 16689708 16689721 12 82 0.0 2.5 1.2 5.5 99 chrX 16689622 intron Sep4 - chrX 16689672 intron Sep4 - chrX 16689721 intron Sep4 - chrX_12_16685001 chrX_16685001 RAL-91 1205 chrX 16951323 16951333 chrX 16951401 16951413 5 79 5.0 6.5 5.8 0.7 90 chrX 16951323 exon RhoGAP15B + chrX 16951368 exon RhoGAP15B + chrX 16951413 exon RhoGAP15B + chrX_5_16950001 chrX_16950001 RAL-91 1206 chrX 16951347 16951355 chrX 16951400 16951434 4 72 3.5 6.5 5.0 0.7 87 chrX 16951347 exon RhoGAP15B + chrX 16951390 exon RhoGAP15B + chrX 16951434 exon RhoGAP15B + chrX_4_16950001 chrX_16950001 RAL-91 1207 chrX 17011966 17012000 chrX 17012048 17012083 9 81 0.0 2.0 1.0 4.5 117 chrX 17011966 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012083 intron CG45002 - chrX_9_17010001 chrX_17010001 RAL-91 1208 chrX 17221827 17221859 chrX 17221913 17221945 5 85 0.5 1.0 0.8 2.8 118 chrX 17221827 intron CG5172 + chrX 17221886 intron CG5172 + chrX 17221945 intron CG5172 + chrX_5_17220001 chrX_17220001 RAL-91 1209 chrX 17427046 17427074 chrX 17427132 17427159 15 86 3.5 4.0 3.8 3.1 113 chrX 17427046 intron,intron CG12994 -,CG5613 + chrX 17427102 intron,intron CG12994 -,CG5613 + chrX 17427159 intron,intron CG12994 -,CG5613 + chrX_15_17425001 chrX_17425001 RAL-91 1210 chrX 17502354 17502371 chrX 17502433 17502451 5 79 0.5 1.0 0.8 2.8 97 chrX 17502354 intron CG43658 - chrX 17502402 intron CG43658 - chrX 17502451 intron CG43658 - chrX_5_17500001 chrX_17500001 RAL-91 1211 chrX 17771312 17771331 chrX 17771386 17771410 5 74 2.0 3.5 2.8 1.3 98 chrX 17771312 intron unc-4 + chrX 17771361 intron unc-4 + chrX 17771410 intron unc-4 + chrX_5_17770001 chrX_17770001 RAL-91 1212 chrX 18194065 18194105 chrX 18194599 18194631 BS 6 533 0.5 1.0 0.8 3.3 566 chrX 18194065 intron Frq2 + chrX 18194348 intron Frq2 + chrX 18194631 intron Frq2 + chrX_6_18190001 chrX_18190001 RAL-91 1213 chrX 18230520 18230542 chrX 18235222 18235231 4 4692 13.0 29.5 21.2 0.2 4711 chrX 18230520 intergenic not near genes chrX 18232876 intergenic not near genes chrX 18235231 intergenic not near genes chrX_4_18230001 chrX_18230001 RAL-91 1214 chrX 18245704 18245722 chrX 18246039 18246057 10 334 4.0 4.5 4.2 1.9 353 chrX 18245704 intergenic not near genes chrX 18245880 intergenic not near genes chrX 18246057 intergenic not near genes chrX_10_18245001 chrX_18245001 RAL-91 1215 chrX 18270047 18270070 chrX 18270135 18270158 6 87 2.0 0.0 1.0 3.0 111 chrX 18270047 intergenic not near genes chrX 18270102 intergenic not near genes chrX 18270158 intergenic not near genes chrX_6_18270001 chrX_18270001 RAL-91 1216 chrX 18322651 18322669 chrX 18322742 18322760 4 90 1.0 0.0 0.5 2.7 109 chrX 18322651 intergenic CG6123 - chrX 18322706 intergenic CG6123 - chrX 18322760 intergenic CG6123 - chrX_4_18320001 chrX_18320001 RAL-91 1217 chrX 18490053 18490055 chrX 18490208 18490210 4 155 3.0 4.5 3.8 0.8 157 chrX 18490053 intergenic CG15046 - chrX 18490132 intergenic not near genes chrX 18490210 intergenic not near genes chrX_4_18490001 chrX_18490001 RAL-91 1218 chrX 18645013 18645049 chrX 18645111 18645145 7 97 1.5 2.0 1.8 2.5 132 chrX 18645013 intron Rip11 - chrX 18645079 intron Rip11 - chrX 18645145 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-91 1219 chrX 18749876 18749887 chrX 18749960 18749971 4 84 2.0 1.5 1.8 1.4 95 chrX 18749876 intergenic not near genes chrX 18749924 intergenic not near genes chrX 18749971 intergenic not near genes chrX_4_18745001 chrX_18745001 RAL-91 1220 chrX 18866672 18866682 chrX 18866929 18866939 4 257 1.5 2.0 1.8 1.4 267 chrX 18866672 intron CG34401 + chrX 18866806 intron CG34401 + chrX 18866939 intron CG34401 + chrX_4_18865001 chrX_18865001 RAL-91 1221 chrX 18896519 18896539 chrX 18896630 18896650 5 111 2.5 1.0 1.8 1.8 131 chrX 18896519 3` UTR CG7349 + chrX 18896584 intergenic CG7349 + chrX 18896650 intergenic CG7349 + chrX_5_18895001 chrX_18895001 RAL-91 1222 chrX 18896909 18896940 chrX 18896986 18897017 10 77 2.0 3.0 2.5 2.9 108 chrX 18896909 intergenic CG7349 + chrX 18896963 intergenic CG7349 + chrX 18897017 intergenic CG7349 + chrX_10_18895001 chrX_18895001 RAL-91 1223 chrX 19014362 19014390 chrX 19014441 19014468 7 77 3.0 2.0 2.5 2.0 106 chrX 19014362 intron CG43759 + chrX 19014415 intron CG43759 + chrX 19014468 intron CG43759 + chrX_7_19010001 chrX_19010001 RAL-91 1224 chrX 19020488 19020507 chrX 19020877 19020886 4 389 5.0 1.5 3.2 1.0 398 chrX 19020488 intron CG43759 + chrX 19020687 intron CG43759 + chrX 19020886 intron CG43759 + chrX_4_19020001 chrX_19020001 RAL-91 1225 chrX 19060412 19060424 chrX 19065193 19065208 Doc 6 4784 3.0 3.0 3.0 1.5 4796 chrX 19060412 intron CG14190 + chrX 19062810 intron CG14190 + chrX 19065208 intron CG14190 + chrX_6_19060001 chrX_19060001 RAL-91 1226 chrX 19136561 19136580 chrX 19143481 19143482 412 4 6914 2.5 2.0 2.2 1.2 6921 chrX 19136561 intergenic not near genes chrX 19140022 intergenic not near genes chrX 19143482 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-91 1227 chrX 19176209 19176239 chrX 19176292 19176302 11 80 3.5 4.5 4.0 2.2 93 chrX 19176209 3` UTR CG7556 - chrX 19176256 3` UTR CG7556 - chrX 19176302 3` UTR CG7556 - chrX_11_19175001 chrX_19175001 RAL-91 1228 chrX 19222723 19222748 chrX 19223105 19223132 10 383 1.0 1.5 1.2 4.5 409 chrX 19222723 intron CG7884 + chrX 19222928 intron CG7884 + chrX 19223132 intron CG7884 + chrX_10_19220001 chrX_19220001 RAL-91 1229 chrX 13057298 13057300 chrX 19242812 19242814 10 6185514 2.5 2.0 2.2 3.1 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_10_16150001 chrX_16150001 RAL-91 1230 chrX 16983076 16983076 chrX 19404963 19404965 4 2421887 3.0 5.5 4.2 0.8 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-91 1231 chrX 19472126 19472152 chrX 19472696 19472722 jockey 7 568 3.0 4.0 3.5 1.6 596 chrX 19472126 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472722 intergenic not near genes chrX_7_19470001 chrX_19470001 RAL-91 1232 chrX 19593947 19593975 chrX 19594032 19594060 8 85 3.0 5.5 4.2 1.5 113 chrX 19593947 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594060 intron CG14205 + chrX_8_19590001 chrX_19590001 RAL-91 1233 chrX 19662030 19662051 chrX 19662253 19662274 7 223 2.5 1.0 1.8 2.5 244 chrX 19662030 intron CG14223 - chrX 19662152 intron CG14223 - chrX 19662274 intron CG14223 - chrX_7_19660001 chrX_19660001 RAL-91 1234 chrX 19710073 19710104 chrX 19711859 19711890 S-element 11 1785 2.0 5.5 3.8 2.3 1817 chrX 19710073 intron meso18E - chrX 19710982 intron meso18E - chrX 19711890 intron meso18E - chrX_11_19710001 chrX_19710001 RAL-91 1235 chrX 19744641 19744661 chrX 19744764 19744786 5 125 21.0 23.5 22.2 0.2 145 chrX 19744641 5` UTR,exon CG33932 +,Rpp20 + chrX 19744714 intron,intron CG33932 +,Rpp20 + chrX 19744786 5` UTR,exon CG33932 +,Rpp20 + chrX_5_19740001 chrX_19740001 RAL-91 1236 chrX 19822846 19822864 chrX 19823013 19823031 6 167 2.0 2.5 2.2 1.9 185 chrX 19822846 intergenic not near genes chrX 19822938 intergenic skpE - chrX 19823031 intergenic skpE - chrX_6_19820001 chrX_19820001 RAL-91 1237 chrX 19983874 19983898 chrX 19983952 19983978 5 80 0.5 0.5 0.5 3.3 104 chrX 19983874 intergenic not near genes chrX 19983926 intergenic not near genes chrX 19983978 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-91 1238 chrX 20007989 20007995 chrX 20008087 20008093 5 98 3.0 0.0 1.5 2.0 104 chrX 20007989 intron Dop2R - chrX 20008041 intron Dop2R - chrX 20008093 intron Dop2R - chrX_5_20005001 chrX_20005001 RAL-91 1239 chrX 20041531 20041566 chrX 20041611 20041646 6 79 0.5 1.5 1.0 3.0 115 chrX 20041531 intron Dop2R - chrX 20041588 intron Dop2R - chrX 20041646 intron Dop2R - chrX_6_20040001 chrX_20040001 RAL-91 1240 chrX 20052792 20052815 chrX 20052868 20052869 8 75 1.5 0.0 0.8 4.4 77 chrX 20052792 intron Dop2R - chrX 20052830 intron Dop2R - chrX 20052869 intron Dop2R - chrX_8_20050001 chrX_20050001 RAL-91 1241 chrX 20144668 20144701 chrX 20144749 20144782 10 80 2.0 4.0 3.0 2.5 114 chrX 20144668 intergenic not near genes chrX 20144725 intergenic not near genes chrX 20144782 intergenic not near genes chrX_10_20140001 chrX_20140001 RAL-91 1242 chrX 20312883 20312910 chrX 20312961 20312987 6 78 2.0 1.5 1.8 2.1 104 chrX 20312883 intron CG1504 - chrX 20312935 intron CG1504 - chrX 20312987 intron CG1504 - chrX_6_20310001 chrX_20310001 RAL-91 1243 chrX 20328123 20328155 chrX 20328200 20328228 11 76 2.5 3.0 2.8 2.9 105 chrX 20328123 intron,exon CG1504 -,CG1631 + chrX 20328176 intron,exon CG1504 -,CG1631 + chrX 20328228 intron,3` UTR CG1504 -,CG1631 + chrX_11_20325001 chrX_20325001 RAL-91 1244 chrX 20367708 20367716 chrX 20367832 20367840 7 123 10.5 2.0 6.2 1.0 132 chrX 20367708 intergenic not near genes chrX 20367774 intergenic not near genes chrX 20367840 intergenic not near genes chrX_7_20365001 chrX_20365001 RAL-91 1245 chrX 20377325 20377349 chrX 20378792 20378816 hobo 9 1465 3.0 4.5 3.8 1.9 1491 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378816 intergenic not near genes chrX_9_20375001 chrX_20375001 RAL-91 1246 chrX 20443171 20443193 chrX 20443246 20443269 6 76 4.0 0.5 2.2 1.9 98 chrX 20443171 exon CG1695 + chrX 20443220 intron CG1695 + chrX 20443269 intron CG1695 + chrX_6_20440001 chrX_20440001 RAL-91 1247 chrX 20483838 20483873 chrX 20483960 20483995 10 121 2.5 2.0 2.2 3.1 157 chrX 20483838 intron RhoGAP19D - chrX 20483916 intron RhoGAP19D - chrX 20483995 intron RhoGAP19D - chrX_10_20480001 chrX_20480001 RAL-91 1248 chrX 20708382 20708392 chrX 20708459 20708467 5 77 4.5 4.0 4.2 1.0 85 chrX 20708382 intergenic not near genes chrX 20708424 intergenic not near genes chrX 20708467 intergenic not near genes chrX_5_20705001 chrX_20705001 RAL-91 1249 chrX 20860262 20860281 chrX 20860361 20860380 4 99 1.5 2.5 2.0 1.3 118 chrX 20860262 intron shakB - chrX 20860321 intron shakB - chrX 20860380 intron shakB - chrX_4_20860001 chrX_20860001 RAL-91 1250 chrX 20940717 20940754 chrX 20942186 20942222 hobo 5 1465 3.0 4.5 3.8 1.0 1505 chrX 20940717 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942222 intergenic not near genes chrX_5_20940001 chrX_20940001 RAL-91 1251 chrX 21197069 21197076 chrX 21197147 21197154 4 76 1.0 2.0 1.5 1.6 85 chrX 21197069 intergenic not near genes chrX 21197112 intergenic not near genes chrX 21197154 intergenic not near genes chrX_4_21195001 chrX_21195001 RAL-91 1252 chrX 21197082 21197087 chrX 21197134 21197165 5 62 1.0 1.0 1.0 2.5 83 chrX 21197082 intergenic not near genes chrX 21197124 intergenic not near genes chrX 21197165 intergenic not near genes chrX_5_21195001 chrX_21195001 RAL-91 1253 chrX 21268088 21268103 chrX 21268166 21268183 4 79 5.0 4.0 4.5 0.7 95 chrX 21268088 intron CG32521 - chrX 21268136 intron CG32521 - chrX 21268183 intron CG32521 - chrX_4_21265001 chrX_21265001 RAL-91 1254 chrX 21474407 21474421 chrX 21474772 21474787 1731 4 366 4.0 2.0 3.0 1.0 380 chrX 21474407 intergenic not near genes chrX 21474597 intergenic not near genes chrX 21474787 intergenic not near genes chrX_4_21470001 chrX_21470001 RAL-91 1255 chrX 21507320 21507347 chrX 21507409 21507432 7 85 2.5 2.5 2.5 2.0 112 chrX 21507320 intron CR45082 - chrX 21507376 intron CR45082 - chrX 21507432 intron CR45082 - chrX_7_21505001 chrX_21505001 RAL-91 1256 chrX 21668257 21668280 chrX 21668341 21668365 5 84 0.0 0.0 0.0 5.0 108 chrX 21668257 intergenic not near genes chrX 21668311 intergenic not near genes chrX 21668365 intergenic not near genes chrX_5_21665001 chrX_21665001 RAL-91 1257 chrX 22665800 22665818 chrX 22665879 22665897 5 79 0.5 0.5 0.5 3.3 97 chrX 22665800 intron CR44997 + chrX 22665848 intron CR44997 + chrX 22665897 intron CR44997 + chrX_5_22665001 chrX_22665001 RAL-91 1258 chrX 22785612 22785634 chrX 22785702 22785725 8 90 1.5 2.5 2.0 2.7 113 chrX 22785612 intron CR44997 + chrX 22785668 intron CR44997 + chrX 22785725 intron CR44997 + chrX_8_22785001 chrX_22785001 RAL-91 1259 chrX 22811995 22812003 chrX 22816767 22816775 F-element 4 4772 4.5 2.0 3.2 1.0 4780 chrX 22811995 intergenic CG12446 - chrX 22814385 intergenic not near genes chrX 22816775 intergenic not near genes chrX_4_22810001 chrX_22810001 RAL-91 1260 chrX 22870878 22870891 chrX 22870968 22870980 6 90 2.0 3.5 2.8 1.6 102 chrX 22870878 intron,3` UTR CG42346 +,CR43656 - chrX 22870929 intron,3` UTR CG42346 +,CR43656 - chrX 22870980 intron,3` UTR CG42346 +,CR43656 - chrX_6_22870001 chrX_22870001 RAL-91 1261 chrY 975791 975824 chrY 975871 975931 7 81 117.0 121.0 119.0 0.1 140 chrY 975791 intergenic not near genes chrY 975861 intergenic not near genes chrY 975931 intergenic not near genes chrY_7_975001 chrY_975001 RAL-91