SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
3	chr2L	47424	47474	chr2L	52578	52629	jockey	31	5152	16.0	13.0	14.5	2.0	5205	chr2L	47424	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52629	intron	Cda5 -	chr2L_31_50001	chr2L_50001	RAL-913
15	chr2L	347844	347916	chr2L	355394	355423	blood	33	7547	5.5	10.0	7.8	3.7	7579	chr2L	347844	3` UTR	Plc21C +	chr2L	351634	intron	Plc21C +	chr2L	355423	3` UTR	Plc21C +	chr2L_33_350001	chr2L_350001	RAL-913
29	chr2L	686913	686939	chr2L	695993	696029	roo	12	9088	13.0	13.5	13.2	0.8	9116	chr2L	686913	intron	ds -	chr2L	691471	intron	ds -	chr2L	696029	intron	ds -	chr2L_12_690001	chr2L_690001	RAL-913
32	chr2L	770425	770431	chr2L	772256	772262	Bari1	6	1831	18.0	8.0	13.0	0.4	1837	chr2L	770425	intergenic	not near genes	chr2L	771344	intergenic	not near genes	chr2L	772262	intergenic	CR44614 +	chr2L_6_770001	chr2L_770001	RAL-913
33	chr2L	770437	770492	chr2L	772253	772278	Bari1	22	1820	7.5	7.5	7.5	2.6	1841	chr2L	770437	intergenic	not near genes	chr2L	771358	intergenic	not near genes	chr2L	772278	intergenic	CR44614 +	chr2L_22_770001	chr2L_770001	RAL-913
47	chr2L	976836	976851	chr2L	984522	984537	roo	6	7686	15.0	8.0	11.5	0.5	7701	chr2L	976836	intergenic	not near genes	chr2L	980686	intergenic	not near genes	chr2L	984537	intergenic	not near genes	chr2L_6_980001	chr2L_980001	RAL-913
48	chr2L	976852	976908	chr2L	984521	984594	roo	13	7684	4.5	8.0	6.2	1.8	7742	chr2L	976852	intergenic	not near genes	chr2L	980723	intergenic	not near genes	chr2L	984594	intergenic	not near genes	chr2L_13_980001	chr2L_980001	RAL-913
49	chr2L	996676	996721	chr2L	1005821	1005866	roo	19	9145	4.0	10.5	7.2	2.3	9190	chr2L	996676	intergenic	not near genes	chr2L	1001271	intergenic	not near genes	chr2L	1005866	intergenic	not near genes	chr2L_19_1000001	chr2L_1000001	RAL-913
58	chr2L	1220085	1220157	chr2L	1227601	1227673	blood	27	7515	8.5	6.5	7.5	3.2	7588	chr2L	1220085	intron	CG42329 +	chr2L	1223879	intron	CG42329 +	chr2L	1227673	intron	CG42329 +	chr2L_27_1220001	chr2L_1220001	RAL-913
70	chr2L	1570646	1570714	chr2L	1573568	1573636	F-element	25	2922	5.0	9.0	7.0	3.1	2990	chr2L	1570646	intron	haf +	chr2L	1572141	intron	haf +	chr2L	1573636	intron	haf +	chr2L_25_1570001	chr2L_1570001	RAL-913
72	chr2L	1618216	1618236	chr2L	1618596	1618616	jockey	6	380	10.0	8.0	9.0	0.6	400	chr2L	1618216	intergenic	CR44603 -	chr2L	1618416	intergenic	CR44603 -	chr2L	1618616	intergenic	CR44603 -	chr2L_6_1615001	chr2L_1615001	RAL-913
75	chr2L	1678914	1678998	chr2L	1686447	1686513	blood	15	7531	0.0	8.0	4.0	3.0	7599	chr2L	1678914	intron	chinmo +	chr2L	1682714	intron	chinmo +	chr2L	1686513	intron	chinmo +	chr2L_15_1680001	chr2L_1680001	RAL-913
76	chr2L	1711311	1711364	chr2L	1711685	1711736	mdg3	21	369	9.5	5.5	7.5	2.5	425	chr2L	1711311	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711524	3` UTR	frtz -	chr2L	1711736	3` UTR	frtz -	chr2L_21_1710001	chr2L_1710001	RAL-913
77	chr2L	1711365	1711380	chr2L	1711682	1711749	mdg3	8	363	7.5	4.5	6.0	1.1	384	chr2L	1711365	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711557	3` UTR	frtz -	chr2L	1711749	3` UTR	frtz -	chr2L_8_1710001	chr2L_1710001	RAL-913
85	chr2L	2100378	2100400	chr2L	2109550	2109551	roo	9	9178	9.5	13.0	11.2	0.7	9173	chr2L	2100378	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109551	intron	dpr3 -	chr2L_9_2100001	chr2L_2100001	RAL-913
86	chr2L	2112069	2112137	chr2L	2119775	2119849	opus	17	7707	7.0	8.5	7.8	1.9	7780	chr2L	2112069	intergenic	not near genes	chr2L	2115959	intergenic	not near genes	chr2L	2119849	intergenic	not near genes	chr2L_17_2115001	chr2L_2115001	RAL-913
91	chr2L	2294027	2294073	chr2L	2299246	2299323	copia	13	5237	5.0	5.5	5.2	2.1	5296	chr2L	2294027	intergenic	not near genes	chr2L	2296675	intergenic	not near genes	chr2L	2299323	intergenic	not near genes	chr2L_13_2295001	chr2L_2295001	RAL-913
106	chr2L	2565498	2565560	chr2L	2571616	2571678	297	23	6118	13.0	16.0	14.5	1.5	6180	chr2L	2565498	exon	Cyp309a2 -	chr2L	2568588	intron	Cyp309a2 -	chr2L	2571678	exon	Cyp309a2 -	chr2L_23_2565001	chr2L_2565001	RAL-913
113	chr2L	2772576	2772594	chr2L	2779210	2779228	297	11	6634	14.0	17.5	15.8	0.7	6652	chr2L	2772576	3` UTR	Syt1 -	chr2L	2775902	intron	Syt1 -	chr2L	2779228	3` UTR	Syt1 -	chr2L_11_2775001	chr2L_2775001	RAL-913
114	chr2L	2772596	2772620	chr2L	2779201	2779254	297	11	6632	9.5	15.5	12.5	0.8	6658	chr2L	2772596	3` UTR	Syt1 -	chr2L	2775925	intron	Syt1 -	chr2L	2779254	3` UTR	Syt1 -	chr2L_11_2775001	chr2L_2775001	RAL-913
121	chr2L	3072988	3073053	chr2L	3078241	3078306	copia	27	5252	13.0	7.5	10.2	2.4	5318	chr2L	3072988	intron	toc -	chr2L	3075647	intron	toc -	chr2L	3078306	intron	toc -	chr2L_27_3075001	chr2L_3075001	RAL-913
128	chr2L	3251467	3251515	chr2L	3259082	3259130	springer	16	7613	11.5	13.5	12.5	1.2	7663	chr2L	3251467	intergenic	not near genes	chr2L	3255298	intergenic	not near genes	chr2L	3259130	intergenic	not near genes	chr2L_16_3255001	chr2L_3255001	RAL-913
134	chr2L	3388558	3388618	chr2L	3388849	3388909	pogo	27	291	13.5	13.5	13.5	1.9	351	chr2L	3388558	intergenic	CG42460 -	chr2L	3388734	intergenic	CG42460 -	chr2L	3388909	intergenic	CG42460 -,CR44791 +	chr2L_27_3385001	chr2L_3385001	RAL-913
138	chr2L	3649749	3649754	chr2L	3655002	3655007	copia	6	5253	29.0	13.5	21.2	0.3	5258	chr2L	3649749	intron	for -	chr2L	3652378	intron	for -	chr2L	3655007	intron	for -	chr2L_6_3650001	chr2L_3650001	RAL-913
139	chr2L	3649757	3649810	chr2L	3655000	3655057	copia	26	5252	10.5	12.5	11.5	2.1	5300	chr2L	3649757	intron	for -	chr2L	3652407	intron	for -	chr2L	3655057	intron	for -	chr2L_26_3650001	chr2L_3650001	RAL-913
151	chr2L	4066002	4066038	chr2L	4068877	4068897	Juan	12	2871	14.0	9.0	11.5	1.0	2895	chr2L	4066002	intron	ed +	chr2L	4067450	intron	ed +	chr2L	4068897	intron	ed +	chr2L_12_4065001	chr2L_4065001	RAL-913
157	chr2L	4181296	4181298	chr2L	4183978	4183980	Burdock	4	2682	8.0	20.0	14.0	0.3	2684	chr2L	4181296	intergenic	not near genes	chr2L	4182638	intergenic	not near genes	chr2L	4183980	intergenic	not near genes	chr2L_4_4180001	chr2L_4180001	RAL-913
168	chr2L	4601657	4601729	chr2L	4609148	4609220	mdg1	35	7491	10.0	6.0	8.0	3.9	7563	chr2L	4601657	intron	dp -	chr2L	4605438	intron	dp -	chr2L	4609220	intron	dp -	chr2L_35_4605001	chr2L_4605001	RAL-913
169	chr2L	4661798	4661854	chr2L	4669428	4669476	opus	29	7630	7.5	18.0	12.8	2.1	7678	chr2L	4661798	intergenic	not near genes	chr2L	4665637	intergenic	not near genes	chr2L	4669476	intergenic	not near genes	chr2L_29_4665001	chr2L_4665001	RAL-913
176	chr2L	4918127	4918204	chr2L	4923250	4923365	jockey	14	5150	6.0	0.0	3.0	3.5	5238	chr2L	4918127	intron	hoe1 -	chr2L	4920746	intron	hoe1 -	chr2L	4923365	intron	hoe1 -	chr2L_14_4920001	chr2L_4920001	RAL-913
183	chr2L	5342729	5342789	chr2L	5345159	5345219	Doc	24	2428	13.0	11.5	12.2	1.8	2490	chr2L	5342729	intergenic	CG12512 -	chr2L	5343974	intergenic	not near genes	chr2L	5345219	intergenic	not near genes	chr2L_24_5340001	chr2L_5340001	RAL-913
203	chr2L	5827671	5827693	chr2L	5836729	5836751	roo	7	9058	19.5	11.5	15.5	0.4	9080	chr2L	5827671	intron	TrissinR +	chr2L	5832211	intron	TrissinR +	chr2L	5836751	intron	TrissinR +	chr2L_7_5830001	chr2L_5830001	RAL-913
204	chr2L	5827696	5827738	chr2L	5836721	5836796	roo	23	9056	10.0	9.5	9.8	2.1	9100	chr2L	5827696	intron	TrissinR +	chr2L	5832246	intron	TrissinR +	chr2L	5836796	intron	TrissinR +	chr2L_23_5830001	chr2L_5830001	RAL-913
214	chr2L	6279591	6279631	chr2L	6279720	6279760	INE-1	14	128	21.0	3.5	12.2	1.1	169	chr2L	6279591	intron	Ddr +	chr2L	6279676	intron	Ddr +	chr2L	6279760	intron	Ddr +	chr2L_14_6275001	chr2L_6275001	RAL-913
217	chr2L	6363106	6363138	chr2L	6366082	6366111	Burdock	18	2976	13.5	5.0	9.2	1.8	3005	chr2L	6363106	intergenic	not near genes	chr2L	6364608	intergenic	not near genes	chr2L	6366111	intergenic	not near genes	chr2L_18_6360001	chr2L_6360001	RAL-913
218	chr2L	6363145	6363179	chr2L	6366080	6366135	Burdock	12	2964	7.0	4.5	5.8	1.8	2990	chr2L	6363145	intergenic	not near genes	chr2L	6364640	intergenic	not near genes	chr2L	6366135	intergenic	not near genes	chr2L_12_6360001	chr2L_6360001	RAL-913
219	chr2L	6426815	6426882	chr2L	6445125	6445181	roo	30	18308	7.5	14.5	11.0	2.5	18366	chr2L	6426815	3` UTR	CG9527 -	chr2L	6435998	intron	CG9527 -	chr2L	6445181	exon	CG9527 -	chr2L_30_6435001	chr2L_6435001	RAL-913
236	chr2L	6876751	6876810	chr2L	6882977	6883001	diver	22	6226	12.0	10.0	11.0	1.8	6250	chr2L	6876751	intron	Nlg2 +	chr2L	6879876	intron	Nlg2 +	chr2L	6883001	intron	Nlg2 +	chr2L_22_6875001	chr2L_6875001	RAL-913
238	chr2L	6991393	6991430	chr2L	6998564	6998599	HMS-Beagle	8	7168	9.5	9.5	9.5	0.8	7206	chr2L	6991393	intron	uif -	chr2L	6994996	intron	uif -	chr2L	6998599	intron	uif -	chr2L_8_6990001	chr2L_6990001	RAL-913
253	chr2L	7343283	7343356	chr2L	7350449	7350487	roo	31	7162	6.5	11.0	8.8	3.2	7204	chr2L	7343283	intron	Wnt6 +	chr2L	7346885	intron	Wnt6 +	chr2L	7350487	intron	Wnt6 +	chr2L_31_7345001	chr2L_7345001	RAL-913
258	chr2L	7548074	7548091	chr2L	7550556	7550582	Burdock	7	2490	10.0	19.0	14.5	0.5	2508	chr2L	7548074	intron	RapGAP1 -	chr2L	7549328	intron	RapGAP1 -	chr2L	7550582	intron	RapGAP1 -	chr2L_7_7545001	chr2L_7545001	RAL-913
263	chr2L	7579148	7579227	chr2L	7579389	7579457	BS	19	238	0.5	0.0	0.2	15.8	309	chr2L	7579148	intergenic	RapGAP1 -	chr2L	7579302	intergenic	RapGAP1 -	chr2L	7579457	intergenic	RapGAP1 -	chr2L_19_7575001	chr2L_7575001	RAL-913
271	chr2L	7958998	7959070	chr2L	7960459	7960533	pogo	27	1460	7.5	7.5	7.5	3.2	1535	chr2L	7958998	intron	Snoo -	chr2L	7959766	intron	Snoo -	chr2L	7960533	intron	Snoo -	chr2L_27_7955001	chr2L_7955001	RAL-913
272	chr2L	7977042	7977113	chr2L	7984068	7984104	297	26	7022	6.0	10.5	8.2	2.8	7062	chr2L	7977042	intron	Snoo -	chr2L	7980573	intron	Snoo -	chr2L	7984104	intron,5` UTR	Snoo -,CG7231 +	chr2L_26_7980001	chr2L_7980001	RAL-913
275	chr2L	8013578	8013583	chr2L	8018832	8018837	copia	4	5254	22.0	0.0	11.0	0.3	5259	chr2L	8013578	intron	Tg +	chr2L	8016208	intron	Tg +	chr2L	8018837	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-913
276	chr2L	8013621	8013642	chr2L	8023606	8023627	copia	10	9985	9.0	12.0	10.5	0.9	10006	chr2L	8013621	intron	Tg +	chr2L	8018624	intron	Tg +	chr2L	8023627	intron	Tg +	chr2L_10_8015001	chr2L_8015001	RAL-913
277	chr2L	8018815	8018826	chr2L	8023649	8023660	Doc	7	4833	0.0	22.0	11.0	0.6	4845	chr2L	8018815	intron	Tg +	chr2L	8021238	intron	Tg +	chr2L	8023660	intron	Tg +	chr2L_7_8020001	chr2L_8020001	RAL-913
293	chr2L	8452379	8452440	chr2L	8461600	8461661	roo	20	9221	9.5	11.0	10.2	1.8	9282	chr2L	8452379	intron	fu12 -	chr2L	8457020	intron	fu12 -	chr2L	8461661	intron	fu12 -	chr2L_20_8455001	chr2L_8455001	RAL-913
297	chr2L	8594425	8594488	chr2L	8601528	8601592	297	20	7103	10.0	12.0	11.0	1.7	7167	chr2L	8594425	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598008	intron	Sema-1a +	chr2L	8601592	intron	Sema-1a +	chr2L_20_8595001	chr2L_8595001	RAL-913
302	chr2L	8723071	8723137	chr2L	8731498	8731564	Tirant	30	8426	8.5	5.5	7.0	3.8	8493	chr2L	8723071	intron	raw -	chr2L	8727318	intron	raw -	chr2L	8731564	intron	raw -	chr2L_30_8725001	chr2L_8725001	RAL-913
318	chr2L	9000241	9000307	chr2L	9007801	9007804	roo	20	7557	11.5	8.5	10.0	1.8	7563	chr2L	9000241	intergenic	Try29F +	chr2L	9004022	intergenic	not near genes	chr2L	9007804	intergenic	not near genes	chr2L_20_9000001	chr2L_9000001	RAL-913
327	chr2L	9217944	9218002	chr2L	9222781	9222847	Doc	14	4843	3.0	2.5	2.8	3.7	4903	chr2L	9217944	intron	tai +	chr2L	9220396	intron	tai +	chr2L	9222847	intron	tai +	chr2L_14_9220001	chr2L_9220001	RAL-913
345	chr2L	9393491	9393500	chr2L	9396507	9396516	jockey	5	3016	7.0	17.5	12.2	0.4	3025	chr2L	9393491	intron	Shawl -	chr2L	9395004	intron	Shawl -	chr2L	9396516	intron	Shawl -	chr2L_5_9395001	chr2L_9395001	RAL-913
346	chr2L	9393503	9393530	chr2L	9396505	9396546	jockey	10	3015	2.5	17.5	10.0	0.9	3043	chr2L	9393503	intron	Shawl -	chr2L	9395024	intron	Shawl -	chr2L	9396546	intron	Shawl -	chr2L_10_9395001	chr2L_9395001	RAL-913
364	chr2L	9770725	9770763	chr2L	9770880	9770918	1360	22	155	7.0	8.5	7.8	2.5	193	chr2L	9770725	intron	ppk18 -	chr2L	9770822	intron	ppk18 -	chr2L	9770918	exon	ppk18 -	chr2L_22_9770001	chr2L_9770001	RAL-913
367	chr2L	9973698	9973719	chr2L	9980867	9980886	HMS-Beagle	10	7169	17.0	12.5	14.8	0.6	7188	chr2L	9973698	intergenic	not near genes	chr2L	9977292	intergenic	not near genes	chr2L	9980886	intergenic	not near genes	chr2L_10_9975001	chr2L_9975001	RAL-913
368	chr2L	9973726	9973753	chr2L	9980850	9980922	HMS-Beagle	14	7163	12.0	10.0	11.0	1.2	7196	chr2L	9973726	intergenic	not near genes	chr2L	9977324	intergenic	not near genes	chr2L	9980922	intergenic	not near genes	chr2L_14_9975001	chr2L_9975001	RAL-913
378	chr2L	10138142	10138190	chr2L	10143438	10143486	Rt1c	14	5293	8.0	15.5	11.8	1.1	5344	chr2L	10138142	intron	CG44153 -	chr2L	10140814	intron	CG44153 -	chr2L	10143486	intron	CG44153 -	chr2L_14_10140001	chr2L_10140001	RAL-913
380	chr2L	10156282	10156343	chr2L	10163802	10163863	blood	30	7518	8.0	11.0	9.5	2.9	7581	chr2L	10156282	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160072	intron	CG44153 -	chr2L	10163863	intron	CG44153 -	chr2L_30_10160001	chr2L_10160001	RAL-913
405	chr2L	10592795	10592868	chr2L	10600507	10600580	opus	27	7711	8.0	5.0	6.5	3.6	7785	chr2L	10592795	intron	Trim9 +	chr2L	10596688	intron	Trim9 +	chr2L	10600580	intron	Trim9 +	chr2L_27_10595001	chr2L_10595001	RAL-913
421	chr2L	10862804	10862867	chr2L	10864457	10864483	Rt1c	21	1653	9.5	7.0	8.2	2.3	1679	chr2L	10862804	3` UTR	CR43807 -	chr2L	10863644	intron	CR43807 -	chr2L	10864483	3` UTR	CR43807 -	chr2L_21_10860001	chr2L_10860001	RAL-913
424	chr2L	10876532	10876560	chr2L	10883638	10883666	297	10	7106	12.0	4.5	8.2	1.1	7134	chr2L	10876532	intergenic	not near genes	chr2L	10880099	intergenic	not near genes	chr2L	10883666	intergenic	not near genes	chr2L_10_10880001	chr2L_10880001	RAL-913
428	chr2L	10946910	10946971	chr2L	10956175	10956234	roo	14	9264	9.0	15.0	12.0	1.1	9324	chr2L	10946910	intron	dpr2 -	chr2L	10951572	intron	dpr2 -	chr2L	10956234	intron	dpr2 -	chr2L_14_10950001	chr2L_10950001	RAL-913
446	chr2L	11315218	11315263	chr2L	11317672	11317703	G2	11	2451	12.5	5.5	9.0	1.1	2485	chr2L	11315218	intergenic	not near genes	chr2L	11316460	intergenic	not near genes	chr2L	11317703	intergenic	not near genes	chr2L_11_11315001	chr2L_11315001	RAL-913
466	chr2L	11540545	11540606	chr2L	11547997	11548058	Tabor	38	7452	13.0	11.0	12.0	2.9	7513	chr2L	11540545	intergenic	not near genes	chr2L	11544302	intergenic	not near genes	chr2L	11548058	intergenic	not near genes	chr2L_38_11540001	chr2L_11540001	RAL-913
468	chr2L	11563601	11563661	chr2L	11568855	11568915	copia	21	5251	5.5	7.5	6.5	2.8	5314	chr2L	11563601	intergenic	not near genes	chr2L	11566258	intergenic	not near genes	chr2L	11568915	intergenic	not near genes	chr2L_21_11565001	chr2L_11565001	RAL-913
472	chr2L	11614040	11614081	chr2L	11615545	11615606	hopper2	10	1531	7.5	8.0	7.8	1.1	1566	chr2L	11614040	intron	kek2 +	chr2L	11614823	intron	kek2 +	chr2L	11615606	intron	kek2 +	chr2L_10_11610001	chr2L_11610001	RAL-913
477	chr2L	11713466	11713528	chr2L	11720984	11721046	blood	26	7516	9.5	9.5	9.5	2.5	7580	chr2L	11713466	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721046	intergenic	CR44143 +	chr2L_26_11715001	chr2L_11715001	RAL-913
498	chr2L	12067280	12067349	chr2L	12074382	12074451	297	26	7102	10.0	8.5	9.2	2.5	7171	chr2L	12067280	intergenic	not near genes	chr2L	12070866	intergenic	not near genes	chr2L	12074451	intergenic	not near genes	chr2L_26_12070001	chr2L_12070001	RAL-913
536	chr2L	12558272	12558344	chr2L	12565451	12565523	HMS-Beagle	35	7178	8.5	10.0	9.2	3.4	7251	chr2L	12558272	intergenic	not near genes	chr2L	12561898	intergenic	not near genes	chr2L	12565523	intergenic	not near genes	chr2L_35_12560001	chr2L_12560001	RAL-913
544	chr2L	12728894	12728938	chr2L	12729186	12729205	pogo	7	288	9.5	17.0	13.2	0.5	311	chr2L	12728894	intron	MRP +	chr2L	12729050	intron	MRP +	chr2L	12729205	exon	MRP +	chr2L_7_12725001	chr2L_12725001	RAL-913
545	chr2L	12731015	12731084	chr2L	12735832	12735901	F-element	32	4817	6.0	10.0	8.0	3.6	4886	chr2L	12731015	intron	MRP +	chr2L	12733458	intron	MRP +	chr2L	12735901	intron	MRP +	chr2L_32_12730001	chr2L_12730001	RAL-913
547	chr2L	12739139	12739197	chr2L	12743959	12744028	Doc	20	4830	9.5	7.0	8.2	2.2	4889	chr2L	12739139	exon	MRP +	chr2L	12741584	intron	MRP +	chr2L	12744028	exon	MRP +	chr2L_20_12740001	chr2L_12740001	RAL-913
550	chr2L	12763776	12763869	chr2L	12764038	12764131	BS	21	262	0.0	0.5	0.2	17.5	355	chr2L	12763776	intergenic	not near genes	chr2L	12763954	intergenic	not near genes	chr2L	12764131	intergenic	not near genes	chr2L_21_12760001	chr2L_12760001	RAL-913
551	chr2L	12781760	12781802	chr2L	12789253	12789295	Quasimodo	17	7496	11.5	13.5	12.5	1.3	7535	chr2L	12781760	intergenic	not near genes	chr2L	12785528	intergenic	not near genes	chr2L	12789295	intergenic	not near genes	chr2L_17_12785001	chr2L_12785001	RAL-913
552	chr2L	12791568	12791628	chr2L	12795293	12795339	F-element	43	3722	11.5	11.5	11.5	3.4	3771	chr2L	12791568	intergenic	not near genes	chr2L	12793454	intergenic	not near genes	chr2L	12795339	intergenic	not near genes	chr2L_43_12790001	chr2L_12790001	RAL-913
553	chr2L	12861682	12861728	chr2L	12863179	12863225	hobo	31	1512	7.0	5.5	6.2	4.3	1543	chr2L	12861682	intergenic	not near genes	chr2L	12862454	intergenic	not near genes	chr2L	12863225	intergenic	not near genes	chr2L_31_12860001	chr2L_12860001	RAL-913
555	chr2L	12893990	12894034	chr2L	12895507	12895545	hobo	11	1512	14.0	17.5	15.8	0.7	1555	chr2L	12893990	intergenic	not near genes	chr2L	12894768	intergenic	not near genes	chr2L	12895545	intergenic	not near genes	chr2L_11_12890001	chr2L_12890001	RAL-913
556	chr2L	12894036	12894046	chr2L	12895501	12895551	hobo	5	1494	12.0	16.0	14.0	0.3	1515	chr2L	12894036	intergenic	not near genes	chr2L	12894794	intergenic	not near genes	chr2L	12895551	intergenic	not near genes	chr2L_5_12890001	chr2L_12890001	RAL-913
558	chr2L	12933806	12933875	chr2L	12941322	12941392	blood	32	7514	10.5	8.0	9.2	3.1	7586	chr2L	12933806	intergenic	not near genes	chr2L	12937599	intergenic	not near genes	chr2L	12941392	intergenic	not near genes	chr2L_32_12935001	chr2L_12935001	RAL-913
561	chr2L	13036201	13036268	chr2L	13036493	13036560	X-element	35	292	5.5	9.5	7.5	4.1	359	chr2L	13036201	intron	CG9932 -	chr2L	13036380	intron	CG9932 -	chr2L	13036560	intron	CG9932 -	chr2L_35_13035001	chr2L_13035001	RAL-913
570	chr2L	13405606	13405671	chr2L	13410453	13410518	Doc	30	4844	9.5	10.5	10.0	2.7	4912	chr2L	13405606	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410518	exon	CG7110 +	chr2L_30_13405001	chr2L_13405001	RAL-913
571	chr2L	13449430	13449486	chr2L	13456911	13456972	Quasimodo	16	7486	10.0	11.0	10.5	1.4	7542	chr2L	13449430	intron,intron	CG42784 +,Hsp60D -	chr2L	13453201	intron	CG42784 +	chr2L	13456972	intron	CG42784 +	chr2L_16_13450001	chr2L_13450001	RAL-913
572	chr2L	13481417	13481453	chr2L	13482069	13482110	jockey	23	654	11.5	12.0	11.8	1.8	693	chr2L	13481417	intron	CG42784 +	chr2L	13481764	intron	CG42784 +	chr2L	13482110	intron	CG42784 +	chr2L_23_13480001	chr2L_13480001	RAL-913
573	chr2L	13481454	13481464	chr2L	13482062	13482121	jockey	7	648	11.0	10.5	10.8	0.6	667	chr2L	13481454	intron	CG42784 +	chr2L	13481788	intron	CG42784 +	chr2L	13482121	intron	CG42784 +	chr2L_7_13480001	chr2L_13480001	RAL-913
574	chr2L	13522098	13522160	chr2L	13527659	13527699	Transpac	27	5567	0.0	9.0	4.5	4.9	5601	chr2L	13522098	intron	B4 -	chr2L	13524898	intron	B4 -	chr2L	13527699	intron	B4 -	chr2L_27_13520001	chr2L_13520001	RAL-913
579	chr2L	13761767	13761773	chr2L	13762928	13762934	Doc	4	1161	24.5	7.0	15.8	0.2	1167	chr2L	13761767	intron	TM9SF4 +	chr2L	13762350	intron	TM9SF4 +	chr2L	13762934	intron	TM9SF4 +	chr2L_4_13760001	chr2L_13760001	RAL-913
580	chr2L	13761776	13761800	chr2L	13762922	13762924	Doc	13	1155	18.0	5.5	11.8	1.0	1148	chr2L	13761776	intron	TM9SF4 +	chr2L	13762350	intron	TM9SF4 +	chr2L	13762924	intron	TM9SF4 +	chr2L_13_13760001	chr2L_13760001	RAL-913
581	chr2L	13761801	13761827	chr2L	13762914	13762982	Doc	11	1156	10.0	3.5	6.8	1.4	1181	chr2L	13761801	intron	TM9SF4 +	chr2L	13762392	intron	TM9SF4 +	chr2L	13762982	intron	TM9SF4 +	chr2L_11_13760001	chr2L_13760001	RAL-913
585	chr2L	13853045	13853114	chr2L	13862245	13862324	roo	26	9202	7.0	0.0	3.5	5.8	9279	chr2L	13853045	intron	CenG1A +	chr2L	13857684	intron	CenG1A +	chr2L	13862324	intron	CenG1A +	chr2L_26_13855001	chr2L_13855001	RAL-913
611	chr2L	14618868	14618889	chr2L	14619299	14619320	jockey	10	431	8.0	5.5	6.8	1.3	452	chr2L	14618868	intron,3` UTR,3` UTR	osp -,Adh +,Adhr +	chr2L	14619094	intron	osp -	chr2L	14619320	intron	osp -	chr2L_10_14615001	chr2L_14615001	RAL-913
613	chr2L	14642533	14642593	chr2L	14651746	14651806	roo	25	9212	10.0	11.0	10.5	2.2	9273	chr2L	14642533	intron	osp -	chr2L	14647170	intron	osp -	chr2L	14651806	intron	osp -	chr2L_25_14645001	chr2L_14645001	RAL-913
617	chr2L	14803835	14803899	chr2L	14809088	14809152	copia	36	5250	12.0	8.0	10.0	3.3	5317	chr2L	14803835	intergenic	not near genes	chr2L	14806494	intergenic	not near genes	chr2L	14809152	intergenic	not near genes	chr2L_36_14805001	chr2L_14805001	RAL-913
619	chr2L	14889907	14889982	chr2L	14890382	14890405	jockey	28	473	4.0	7.5	5.8	4.1	498	chr2L	14889907	intergenic	not near genes	chr2L	14890156	intergenic	not near genes	chr2L	14890405	intergenic	not near genes	chr2L_28_14890001	chr2L_14890001	RAL-913
622	chr2L	14984339	14984376	chr2L	14991991	14992028	opus	20	7652	16.5	14.0	15.2	1.2	7689	chr2L	14984339	intron	mol -	chr2L	14988184	intron	mol -	chr2L	14992028	intron	mol -	chr2L_20_14985001	chr2L_14985001	RAL-913
623	chr2L	14984377	14984402	chr2L	14991981	14992054	opus	10	7647	11.0	10.5	10.8	0.8	7677	chr2L	14984377	intron	mol -	chr2L	14988216	intron	mol -	chr2L	14992054	intron	mol -	chr2L_10_14985001	chr2L_14985001	RAL-913
642	chr2L	15446004	15446076	chr2L	15453523	15453595	blood	35	7518	5.5	2.5	4.0	7.0	7591	chr2L	15446004	intergenic	not near genes	chr2L	15449800	intergenic	not near genes	chr2L	15453595	intergenic	not near genes	chr2L_35_15445001	chr2L_15445001	RAL-913
648	chr2L	15586368	15586428	chr2L	15593470	15593530	297	28	7101	11.0	8.5	9.8	2.6	7162	chr2L	15586368	intergenic	not near genes	chr2L	15589949	intergenic	not near genes	chr2L	15593530	intergenic	not near genes	chr2L_28_15585001	chr2L_15585001	RAL-913
656	chr2L	15826847	15826885	chr2L	15829291	15829306	Tabor	20	2443	1.0	15.0	8.0	2.2	2459	chr2L	15826847	intergenic	not near genes	chr2L	15828076	intergenic	not near genes	chr2L	15829306	intergenic	not near genes	chr2L_20_15825001	chr2L_15825001	RAL-913
662	chr2L	15955983	15956044	chr2L	15957500	15957561	hobo	30	1516	8.0	9.0	8.5	3.2	1578	chr2L	15955983	intron	beat-Ib -	chr2L	15956772	intron	beat-Ib -	chr2L	15957561	intron	beat-Ib -	chr2L_30_15955001	chr2L_15955001	RAL-913
675	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	16	145889	31.0	44.0	37.5	0.4	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_16_16140001	chr2L_16140001	RAL-913
676	chr2L	16141124	16141187	chr2L	16146381	16146444	copia	21	5257	12.5	10.0	11.2	1.7	5320	chr2L	16141124	intergenic	not near genes	chr2L	16143784	intergenic	not near genes	chr2L	16146444	intergenic	not near genes	chr2L_21_16140001	chr2L_16140001	RAL-913
677	chr2L	16153695	16153749	chr2L	16160813	16160867	297	17	7116	11.5	8.0	9.8	1.6	7172	chr2L	16153695	intergenic	not near genes	chr2L	16157281	intergenic	not near genes	chr2L	16160867	intergenic	not near genes	chr2L_17_16155001	chr2L_16155001	RAL-913
679	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	22	145889	31.0	44.0	37.5	0.6	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_22_16140001	chr2L_16140001	RAL-913
682	chr2L	16280241	16280279	chr2L	16281440	16281491	1360	18	1212	8.5	12.0	10.2	1.6	1250	chr2L	16280241	intron	crp -	chr2L	16280866	intron	crp -	chr2L	16281491	intron	crp -	chr2L_18_16280001	chr2L_16280001	RAL-913
691	chr2L	16511943	16511993	chr2L	16519120	16519155	HMS-Beagle	23	7176	11.0	7.5	9.2	2.3	7212	chr2L	16511943	intron	CG5953 -	chr2L	16515549	intron	CG5953 -	chr2L	16519155	intron	CG5953 -	chr2L_23_16515001	chr2L_16515001	RAL-913
707	chr2L	16958062	16958125	chr2L	16962900	16962963	Doc	34	4838	9.0	7.0	8.0	3.8	4901	chr2L	16958062	intergenic	not near genes	chr2L	16960512	intergenic	not near genes	chr2L	16962963	intergenic	not near genes	chr2L_34_16960001	chr2L_16960001	RAL-913
714	chr2L	17167523	17167586	chr2L	17167814	17167876	pogo	11	290	2.5	6.0	4.2	2.1	353	chr2L	17167523	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167700	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167876	intron,intron	CG34106 +,beat-IIIa +	chr2L_11_17165001	chr2L_17165001	RAL-913
716	chr2L	17199131	17199182	chr2L	17200648	17200699	hobo	19	1517	8.0	8.0	8.0	2.1	1568	chr2L	17199131	intron	beat-IIIc -	chr2L	17199915	intron	beat-IIIc -	chr2L	17200699	intron	beat-IIIc -	chr2L_19_17195001	chr2L_17195001	RAL-913
718	chr2L	17273150	17273216	chr2L	17277983	17278049	F-element	21	4832	11.0	6.0	8.5	2.2	4899	chr2L	17273150	intergenic	not near genes	chr2L	17275600	intergenic	not near genes	chr2L	17278049	intergenic	not near genes	chr2L_21_17275001	chr2L_17275001	RAL-913
730	chr2L	17432024	17432044	chr2L	17432181	17432201	1360	13	157	0.0	22.5	11.2	1.1	177	chr2L	17432024	intron	Dif -	chr2L	17432112	intron	Dif -	chr2L	17432201	intron	Dif -	chr2L_13_17430001	chr2L_17430001	RAL-913
739	chr2L	17687471	17687521	chr2L	17692266	17692316	F-element	15	4795	2.0	6.0	4.0	3.0	4845	chr2L	17687471	intron	CadN -	chr2L	17689894	intron	CadN -	chr2L	17692316	intron	CadN -	chr2L_15_17685001	chr2L_17685001	RAL-913
741	chr2L	17727725	17727783	chr2L	17729464	17729522	hobo	18	1738	7.0	12.0	9.5	1.7	1797	chr2L	17727725	intron	CadN -	chr2L	17728624	intron	CadN -	chr2L	17729522	intron	CadN -	chr2L_18_17725001	chr2L_17725001	RAL-913
746	chr2L	17819879	17819943	chr2L	17825132	17825196	copia	23	5252	10.0	10.0	10.0	2.1	5317	chr2L	17819879	intron	CadN2 -	chr2L	17822538	intron	CadN2 -	chr2L	17825196	intron	CadN2 -	chr2L_23_17820001	chr2L_17820001	RAL-913
749	chr2L	17911917	17911931	chr2L	17914145	17914159	pogo	7	2228	17.0	8.0	12.5	0.5	2242	chr2L	17911917	intergenic	not near genes	chr2L	17913038	intergenic	not near genes	chr2L	17914159	intergenic	CG43271 -	chr2L_7_17910001	chr2L_17910001	RAL-913
750	chr2L	17911932	17911979	chr2L	17914141	17914207	pogo	12	2226	13.5	8.0	10.8	1.0	2275	chr2L	17911932	intergenic	not near genes	chr2L	17913070	intergenic	not near genes	chr2L	17914207	intergenic	CG43271 -	chr2L_12_17910001	chr2L_17910001	RAL-913
754	chr2L	17951903	17951967	chr2L	17953420	17953484	hobo	35	1516	11.5	10.5	11.0	2.9	1581	chr2L	17951903	intergenic	CR44398 -,CR44397 -	chr2L	17952694	intergenic	not near genes	chr2L	17953484	intergenic	not near genes	chr2L_35_17950001	chr2L_17950001	RAL-913
755	chr2L	18051832	18051850	chr2L	18061029	18061037	roo	12	9195	22.0	8.0	15.0	0.8	9205	chr2L	18051832	intron	rdo +	chr2L	18056434	intron	rdo +	chr2L	18061037	intron	rdo +	chr2L_12_18055001	chr2L_18055001	RAL-913
756	chr2L	18051857	18051897	chr2L	18061028	18061094	roo	18	9194	12.0	8.0	10.0	1.6	9237	chr2L	18051857	intron	rdo +	chr2L	18056476	intron	rdo +	chr2L	18061094	intron	rdo +	chr2L_18_18055001	chr2L_18055001	RAL-913
773	chr2L	18407984	18408060	chr2L	18412818	18412902	Doc	22	4838	8.5	0.0	4.2	4.2	4918	chr2L	18407984	intergenic	not near genes	chr2L	18410443	intergenic	not near genes	chr2L	18412902	intergenic	not near genes	chr2L_22_18410001	chr2L_18410001	RAL-913
798	chr2L	19147334	19147342	chr2L	19154404	19154427	297	6	7082	22.5	6.5	14.5	0.4	7093	chr2L	19147334	intron	brat +	chr2L	19150880	intron	brat +	chr2L	19154427	intron	brat +	chr2L_6_19150001	chr2L_19150001	RAL-913
799	chr2L	19147343	19147391	chr2L	19154403	19154476	297	30	7081	10.0	6.5	8.2	3.3	7133	chr2L	19147343	intron	brat +	chr2L	19150910	intron	brat +	chr2L	19154476	intron	brat +	chr2L_30_19150001	chr2L_19150001	RAL-913
807	chr2L	19344973	19345037	chr2L	19357232	19357291	blood	23	12259	8.5	8.5	8.5	2.4	12318	chr2L	19344973	intron	dnt -	chr2L	19351132	intron	dnt -	chr2L	19357291	intron	dnt -	chr2L_23_19350001	chr2L_19350001	RAL-913
826	chr2L	19620061	19620122	chr2L	19621086	19621130	jockey	19	1027	7.5	4.5	6.0	2.7	1069	chr2L	19620061	intron	Lar +	chr2L	19620596	intron	Lar +	chr2L	19621130	intron	Lar +	chr2L_19_19620001	chr2L_19620001	RAL-913
829	chr2L	19652525	19652592	chr2L	19674011	19674076	opus	31	21486	11.0	10.0	10.5	2.7	21551	chr2L	19652525	intron	Lar +	chr2L	19663300	intron	Lar +	chr2L	19674076	intron	Lar +	chr2L_31_19660001	chr2L_19660001	RAL-913
830	chr2L	19703504	19703555	chr2L	19712690	19712736	roo	25	9185	15.0	10.0	12.5	1.9	9232	chr2L	19703504	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712736	intron	Lar +	chr2L_25_19705001	chr2L_19705001	RAL-913
831	chr2L	19737311	19737377	chr2L	19740829	19740836	1360	13	3504	9.5	6.5	8.0	1.4	3525	chr2L	19737311	intergenic	Nf-YB +	chr2L	19739074	intergenic	not near genes	chr2L	19740836	intergenic	not near genes	chr2L_13_19735001	chr2L_19735001	RAL-913
833	chr2L	19762760	19762829	chr2L	19763052	19763121	pogo	30	289	6.0	6.5	6.2	4.2	361	chr2L	19762760	exon	fbp -	chr2L	19762940	intron	fbp -	chr2L	19763121	intron	fbp -	chr2L_30_19760001	chr2L_19760001	RAL-913
848	chr2L	20005827	20005897	chr2L	20010953	20011023	flea	24	5126	8.5	13.0	10.8	2.0	5196	chr2L	20005827	intron	CG43861 -	chr2L	20008425	intron	CG43861 -	chr2L	20011023	intron	CG43861 -	chr2L_24_20005001	chr2L_20005001	RAL-913
855	chr2L	20272076	20272134	chr2L	20282836	20282895	copia	32	10760	14.0	10.0	12.0	2.5	10819	chr2L	20272076	intergenic	not near genes	chr2L	20277486	intergenic	not near genes	chr2L	20282895	intergenic	not near genes	chr2L_32_20275001	chr2L_20275001	RAL-913
857	chr2L	20303120	20303180	chr2L	20310638	20310698	blood	31	7518	11.5	6.5	9.0	3.1	7578	chr2L	20303120	intergenic	not near genes	chr2L	20306909	intergenic	not near genes	chr2L	20310698	intergenic	not near genes	chr2L_31_20305001	chr2L_20305001	RAL-913
859	chr2L	20372172	20372239	chr2L	20372472	20372530	pogo	29	298	7.5	8.0	7.8	3.3	358	chr2L	20372172	intergenic	Ugt37a1 -	chr2L	20372351	intergenic	Ugt37a1 -	chr2L	20372530	exon	Ugt37a1 -	chr2L_29_20370001	chr2L_20370001	RAL-913
860	chr2L	20407745	20407782	chr2L	20412906	20412951	flea	8	5168	4.0	4.0	4.0	1.6	5206	chr2L	20407745	intron	CG10947 -	chr2L	20410348	intron	CG10947 -	chr2L	20412951	intron	CG10947 -	chr2L_8_20410001	chr2L_20410001	RAL-913
868	chr2L	20568613	20568682	chr2L	20569053	20569122	X-element	33	440	9.5	10.0	9.8	3.1	509	chr2L	20568613	intron	CR45347 +	chr2L	20568868	intron	CR45347 +	chr2L	20569122	intron	CR45347 +	chr2L_33_20565001	chr2L_20565001	RAL-913
869	chr2L	20576178	20576237	chr2L	20583697	20583755	blood	30	7518	8.0	12.0	10.0	2.7	7577	chr2L	20576178	intergenic	CR45347 +	chr2L	20579966	intergenic	not near genes	chr2L	20583755	3` UTR	CR44909 -	chr2L_30_20575001	chr2L_20575001	RAL-913
873	chr2L	20639458	20639530	chr2L	20639784	20639856	INE-1	17	325	15.5	19.5	17.5	0.9	398	chr2L	20639458	intergenic	not near genes	chr2L	20639657	intergenic	CG31680 +	chr2L	20639856	intergenic	CG31680 +	chr2L_17_20635001	chr2L_20635001	RAL-913
884	chr2L	20835766	20835838	chr2L	20836533	20836605	Quasimodo	32	767	9.0	11.0	10.0	2.9	839	chr2L	20835766	5` UTR	Oseg5 -	chr2L	20836186	intergenic	Oseg5 -,Spn38F -	chr2L	20836605	intergenic	Spn38F -	chr2L_32_20835001	chr2L_20835001	RAL-913
890	chr2L	20891488	20891543	chr2L	20896638	20896694	jockey	17	5151	4.5	10.0	7.2	2.1	5206	chr2L	20891488	intron,intron	CG43739 -,sky -	chr2L	20894091	intron,intron	CG43739 -,sky -	chr2L	20896694	intron,intron	CG43739 -,sky -	chr2L_17_20890001	chr2L_20890001	RAL-913
891	chr2L	20901472	20901479	chr2L	20902686	20902693	1360	4	1214	6.5	21.5	14.0	0.3	1221	chr2L	20901472	intron,intron	CG43739 -,sky -	chr2L	20902082	intron,intron	CG43739 -,sky -	chr2L	20902693	intron,intron	CG43739 -,sky -	chr2L_4_20900001	chr2L_20900001	RAL-913
898	chr2L	20976607	20976659	chr2L	20981472	20981524	X-element	26	4864	9.0	9.0	9.0	2.6	4917	chr2L	20976607	intron	CG42238 -	chr2L	20979066	intron	CG42238 -	chr2L	20981524	intron	CG42238 -	chr2L_26_20975001	chr2L_20975001	RAL-913
903	chr2L	21020235	21020306	chr2L	21023962	21024010	NOF	22	3723	9.5	7.5	8.5	2.3	3775	chr2L	21020235	intron	CG42238 -	chr2L	21022122	intron	CG42238 -	chr2L	21024010	intron	CG42238 -	chr2L_22_21020001	chr2L_21020001	RAL-913
904	chr2L	21041094	21041100	chr2L	21049405	21049411	Tirant	4	8311	25.0	10.0	17.5	0.2	8317	chr2L	21041094	intron	CG42238 -	chr2L	21045252	intron	CG42238 -	chr2L	21049411	intron	CG42238 -	chr2L_4_21045001	chr2L_21045001	RAL-913
905	chr2L	21041103	21041161	chr2L	21049400	21049451	Tirant	24	8307	12.5	8.0	10.2	2.1	8348	chr2L	21041103	intron	CG42238 -	chr2L	21045277	intron	CG42238 -	chr2L	21049451	intron	CG42238 -	chr2L_24_21045001	chr2L_21045001	RAL-913
915	chr2L	21347508	21347571	chr2L	21355030	21355093	blood	37	7521	11.0	9.5	10.2	3.3	7585	chr2L	21347508	intron	Tsp39D +	chr2L	21351300	intron	Tsp39D +	chr2L	21355093	intron	Tsp39D +	chr2L_37_21350001	chr2L_21350001	RAL-913
919	chr2L	21596985	21597045	chr2L	21604777	21604826	roo	11	7793	10.0	9.0	9.5	1.0	7841	chr2L	21596985	intergenic	not near genes	chr2L	21600906	intergenic	not near genes	chr2L	21604826	intergenic	not near genes	chr2L_11_21600001	chr2L_21600001	RAL-913
920	chr2L	21691794	21691808	chr2L	21698314	21698328	Burdock	8	6520	17.5	2.0	9.8	0.7	6534	chr2L	21691794	intron	CG31619 +	chr2L	21695061	intron	CG31619 +	chr2L	21698328	intron	CG31619 +	chr2L_8_21695001	chr2L_21695001	RAL-913
932	chr2L	21981637	21981702	chr2L	21990849	21990907	roo	15	9214	12.0	7.5	9.8	1.4	9270	chr2L	21981637	exon	CG2528 -	chr2L	21986272	intron	CG2528 -	chr2L	21990907	exon	CG2528 -	chr2L_15_21985001	chr2L_21985001	RAL-913
933	chr2L	22037328	22037389	chr2L	22037680	22037741	INE-1	23	351	13.5	8.0	10.8	1.9	413	chr2L	22037328	intergenic	not near genes	chr2L	22037534	intergenic	CG41434 +	chr2L	22037741	intergenic	CG41434 +	chr2L_23_22035001	chr2L_22035001	RAL-913
934	chr2L	22073016	22073024	chr2L	22073151	22073159	INE-1	5	135	22.0	8.0	15.0	0.3	143	chr2L	22073016	intergenic	CG31702 +	chr2L	22073088	intergenic	CG31702 +	chr2L	22073159	intergenic	CG31702 +	chr2L_5_22070001	chr2L_22070001	RAL-913
941	chr2L	22515100	22515107	chr2L	22522600	22522607	HMS-Beagle2	7	7500	17.5	5.5	11.5	0.6	7507	chr2L	22515100	intergenic	not near genes	chr2L	22518854	intergenic	not near genes	chr2L	22522607	intergenic	not near genes	chr2L_7_22515001	chr2L_22515001	RAL-913
942	chr2L	22515116	22515125	chr2L	22522595	22522625	HMS-Beagle2	7	7497	16.0	5.0	10.5	0.6	7509	chr2L	22515116	intergenic	not near genes	chr2L	22518870	intergenic	not near genes	chr2L	22522625	intergenic	not near genes	chr2L_7_22515001	chr2L_22515001	RAL-913
943	chr2L	22548892	22548930	chr2L	22550133	22550205	1360	9	1256	6.5	15.5	11.0	0.8	1313	chr2L	22548892	intergenic	CG17490 +	chr2L	22549548	intergenic	not near genes	chr2L	22550205	intergenic	CG17493 +	chr2L_9_22545001	chr2L_22545001	RAL-913
945	chr2L	22581927	22582002	chr2L	22583766	22583842	S-element	25	1840	9.0	14.0	11.5	2.0	1915	chr2L	22581927	intron	CG17494 +	chr2L	22582884	intron	CG17494 +	chr2L	22583842	intron	CG17494 +	chr2L_25_22580001	chr2L_22580001	RAL-913
946	chr2L	22719393	22719465	chr2L	22727559	22727642	gypsy2	28	8173	14.0	10.0	12.0	2.2	8249	chr2L	22719393	intron	CG40006 -	chr2L	22723518	intron	CG40006 -	chr2L	22727642	intron	CG40006 -	chr2L_28_22720001	chr2L_22720001	RAL-913
947	chr2L	22776377	22776450	chr2L	22778216	22778268	S-element	26	1838	7.0	13.0	10.0	2.4	1891	chr2L	22776377	intergenic	not near genes	chr2L	22777322	intergenic	not near genes	chr2L	22778268	intergenic	not near genes	chr2L_26_22775001	chr2L_22775001	RAL-913
950	chr2L	23006460	23006529	chr2L	23007186	23007245	Osvaldo	17	723	9.0	14.5	11.8	1.3	785	chr2L	23006460	intron	Cht3 -	chr2L	23006852	intron	Cht3 -	chr2L	23007245	intron	Cht3 -	chr2L_17_23005001	chr2L_23005001	RAL-913
951	chr2L	23070217	23070265	chr2L	23076526	23076592	G5	22	6313	44.5	51.5	48.0	0.4	6375	chr2L	23070217	5` UTR	CR43242 +	chr2L	23073404	intergenic	not near genes	chr2L	23076592	intergenic	not near genes	chr2L_22_23070001	chr2L_23070001	RAL-913
952	chr2R	469922	469971	chr2R	473213	473262	F-element	13	3289	10.0	18.5	14.2	0.9	3340	chr2R	469922	intergenic	not near genes	chr2R	471592	intergenic	not near genes	chr2R	473262	intergenic	not near genes	chr2R_13_470001	chr2R_470001	RAL-913
953	chr2R	529316	529347	chr2R	537991	538022	Max-element	10	8674	12.5	17.5	15.0	0.6	8706	chr2R	529316	intron	CG40378 +	chr2R	533669	intron	CG40378 +	chr2R	538022	intron	CG40378 +	chr2R_10_530001	chr2R_530001	RAL-913
954	chr2R	552729	552782	chr2R	553997	554004	1360	9	1255	26.0	24.0	25.0	0.3	1275	chr2R	552729	intron	CG40378 +	chr2R	553366	intron	CG40378 +	chr2R	554004	intron	CG40378 +	chr2R_9_550001	chr2R_550001	RAL-913
956	chr2R	699078	699114	chr2R	705344	705380	297	10	6266	9.5	10.0	9.8	0.9	6302	chr2R	699078	intron	CG43676 +	chr2R	702229	intron	CG43676 +	chr2R	705380	exon	CG43676 +	chr2R_10_700001	chr2R_700001	RAL-913
957	chr2R	1082366	1082372	chr2R	1087192	1087198	Doc	4	4826	9.5	23.0	16.2	0.2	4832	chr2R	1082366	intron	rl +	chr2R	1084782	intron	rl +	chr2R	1087198	intron	rl +	chr2R_4_1080001	chr2R_1080001	RAL-913
961	chr2R	1516564	1516576	chr2R	1521342	1521354	1731	9	4778	51.5	23.0	37.2	0.2	4790	chr2R	1516564	exon	Maf1 -	chr2R	1518959	intron	Maf1 -	chr2R	1521354	5` UTR	Maf1 -	chr2R_9_1515001	chr2R_1515001	RAL-913
962	chr2R	1516578	1516603	chr2R	1521336	1521381	1731	32	4777	39.0	21.0	30.0	1.0	4803	chr2R	1516578	exon	Maf1 -	chr2R	1518980	intron	Maf1 -	chr2R	1521381	5` UTR	Maf1 -	chr2R_32_1515001	chr2R_1515001	RAL-913
965	chr2R	2110463	2110489	chr2R	2118071	2118097	17.6	9	7608	13.0	9.5	11.2	0.7	7634	chr2R	2110463	intron	CG17684 -	chr2R	2114280	intron	CG17684 -	chr2R	2118097	intron	CG17684 -	chr2R_9_2110001	chr2R_2110001	RAL-913
966	chr2R	2498944	2499010	chr2R	2508141	2508202	roo	39	9196	10.0	7.0	8.5	4.1	9258	chr2R	2498944	intron	MFS17 -	chr2R	2503573	intron	MFS17 -	chr2R	2508202	intron	MFS17 -	chr2R_39_2500001	chr2R_2500001	RAL-913
968	chr2R	1373049	1373071	chr2R	2589297	2589319	Cr1a	8	1216248	37.0	43.5	40.2	0.2	1216270	chr2R	1373049	intron	l(2)41Ab +	chr2R	1981184	intron	CG17684 -	chr2R	2589319	intergenic	not near genes	chr2R_8_1980001	chr2R_1980001	RAL-913
969	chr2R	2591487	2591507	chr2R	2594213	2594233	roo	12	2725	49.0	25.5	37.2	0.3	2746	chr2R	2591487	intergenic	not near genes	chr2R	2592860	intergenic	not near genes	chr2R	2594233	intergenic	not near genes	chr2R_12_2590001	chr2R_2590001	RAL-913
970	chr2R	2875365	2875394	chr2R	2878902	2878931	HMS-Beagle	15	3560	44.0	50.0	47.0	0.3	3566	chr2R	2875365	intergenic	not near genes	chr2R	2877148	intergenic	not near genes	chr2R	2878931	intergenic	not near genes	chr2R_15_2875001	chr2R_2875001	RAL-913
973	chr2R	3144045	3144101	chr2R	3393373	3393429	Doc	16	249327	35.0	11.5	23.2	0.7	249384	chr2R	3144045	intron	CG42596 +	chr2R	3268737	intergenic	not near genes	chr2R	3393429	intergenic	not near genes	chr2R_16_3265001	chr2R_3265001	RAL-913
975	chr2R	3532572	3532631	chr2R	3536065	3536124	Doc	21	3493	6.0	7.0	6.5	2.8	3552	chr2R	3532572	intergenic	not near genes	chr2R	3534348	intergenic	not near genes	chr2R	3536124	intergenic	not near genes	chr2R_21_3530001	chr2R_3530001	RAL-913
978	chr2R	4141909	4141922	chr2R	4150693	4150706	Dm88	6	8784	39.5	44.5	42.0	0.1	8797	chr2R	4141909	intergenic	not near genes	chr2R	4146308	intergenic	not near genes	chr2R	4150706	intergenic	not near genes	chr2R_6_4145001	chr2R_4145001	RAL-913
981	chr2R	4622915	4622947	chr2R	4624124	4624156	1360	4	1209	3.0	4.0	3.5	0.9	1241	chr2R	4622915	intergenic	CR44101 -	chr2R	4623536	intergenic	not near genes	chr2R	4624156	intergenic	not near genes	chr2R_4_4620001	chr2R_4620001	RAL-913
982	chr2R	4750301	4750365	chr2R	4751508	4751553	1360	22	1203	12.0	9.5	10.8	1.9	1252	chr2R	4750301	intron	conu +	chr2R	4750927	intron	conu +	chr2R	4751553	intron	conu +	chr2R_22_4750001	chr2R_4750001	RAL-913
983	chr2R	4838830	4838881	chr2R	4840403	4840454	transib2	4	1573	40.5	35.5	38.0	0.1	1624	chr2R	4838830	intergenic	not near genes	chr2R	4839642	intergenic	not near genes	chr2R	4840454	intergenic	not near genes	chr2R_4_4835001	chr2R_4835001	RAL-913
993	chr2R	5417949	5418017	chr2R	5420631	5420692	Burdock	33	2682	11.5	10.5	11.0	2.8	2743	chr2R	5417949	intron	laccase2 +	chr2R	5419320	intron	laccase2 +	chr2R	5420692	intron	laccase2 +	chr2R_33_5415001	chr2R_5415001	RAL-913
1013	chr2R	5869231	5869296	chr2R	5874357	5874422	flea	37	5126	12.5	9.5	11.0	3.1	5191	chr2R	5869231	intergenic	not near genes	chr2R	5871826	intergenic	not near genes	chr2R	5874422	intergenic	not near genes	chr2R_37_5870001	chr2R_5870001	RAL-913
1017	chr2R	5902114	5902191	chr2R	5909723	5909735	17.6	27	7606	7.5	10.5	9.0	2.7	7621	chr2R	5902114	5` UTR	CG43366 +	chr2R	5905924	intron	CG43366 +	chr2R	5909735	intron	CG43366 +	chr2R_27_5905001	chr2R_5905001	RAL-913
1027	chr2R	6096672	6096751	chr2R	6101920	6101959	BS	13	5240	8.0	7.0	7.5	1.5	5287	chr2R	6096672	intron	EcR -	chr2R	6099316	intron	EcR -	chr2R	6101959	intron	EcR -	chr2R_13_6095001	chr2R_6095001	RAL-913
1034	chr2R	6494493	6494547	chr2R	6499305	6499359	F-element	14	4812	8.0	7.5	7.8	1.6	4866	chr2R	6494493	intergenic	not near genes	chr2R	6496926	intergenic	not near genes	chr2R	6499359	intergenic	not near genes	chr2R_14_6495001	chr2R_6495001	RAL-913
1040	chr2R	6579760	6579803	chr2R	6584897	6584940	flea	25	5137	9.0	11.0	10.0	2.3	5180	chr2R	6579760	intron	jing +	chr2R	6582350	intron	jing +	chr2R	6584940	intron	jing +	chr2R_25_6580001	chr2R_6580001	RAL-913
1058	chr2R	6952128	6952142	chr2R	6959758	6959772	opus	14	7630	24.0	14.0	19.0	0.7	7644	chr2R	6952128	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955950	intron,intron	mim -,CheB42c -	chr2R	6959772	intron,intron	mim -,CheB42c -	chr2R_14_6955001	chr2R_6955001	RAL-913
1059	chr2R	6952147	6952185	chr2R	6959750	6959815	opus	15	7628	14.0	11.5	12.8	1.1	7668	chr2R	6952147	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955981	intron,intron	mim -,CheB42c -	chr2R	6959815	intron,intron	mim -,CheB42c -	chr2R_15_6955001	chr2R_6955001	RAL-913
1066	chr2R	7139861	7139949	chr2R	7141414	7141491	hopper2	4	1548	1.5	8.5	5.0	0.7	1630	chr2R	7139861	intergenic	not near genes	chr2R	7140676	intergenic	not near genes	chr2R	7141491	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	RAL-913
1070	chr2R	7196531	7196596	chr2R	7201349	7201371	F-element	14	4821	6.5	2.5	4.5	2.5	4840	chr2R	7196531	intron	pk +	chr2R	7198951	intron	pk +	chr2R	7201371	intron	pk +	chr2R_14_7195001	chr2R_7195001	RAL-913
1071	chr2R	7209844	7209860	chr2R	7217638	7217671	roo	5	7797	6.0	10.0	8.0	0.6	7827	chr2R	7209844	intron	pk +	chr2R	7213758	intron	pk +	chr2R	7217671	intron	pk +	chr2R_5_7210001	chr2R_7210001	RAL-913
1072	chr2R	7235785	7235841	chr2R	7240916	7240957	jockey	23	5135	17.5	4.5	11.0	1.9	5172	chr2R	7235785	intergenic	not near genes	chr2R	7238371	intergenic	not near genes	chr2R	7240957	intergenic	not near genes	chr2R_23_7235001	chr2R_7235001	RAL-913
1074	chr2R	7262155	7262206	chr2R	7269265	7269317	297	5	7104	11.0	18.5	14.8	0.3	7162	chr2R	7262155	intergenic	not near genes	chr2R	7265736	intergenic	not near genes	chr2R	7269317	intergenic	not near genes	chr2R_5_7265001	chr2R_7265001	RAL-913
1080	chr2R	7434855	7434884	chr2R	7439206	7439235	Juan	5	4351	31.0	33.5	32.2	0.2	4380	chr2R	7434855	3` UTR	so +	chr2R	7437045	intergenic	not near genes	chr2R	7439235	intergenic	not near genes	chr2R_5_7435001	chr2R_7435001	RAL-913
1083	chr2R	7608367	7608413	chr2R	7613620	7613666	I-element	13	5253	12.5	11.0	11.8	1.0	5299	chr2R	7608367	intron	CG1358 -	chr2R	7611016	intron	CG1358 -	chr2R	7613666	intron	CG1358 -	chr2R_13_7610001	chr2R_7610001	RAL-913
1084	chr2R	7608415	7608426	chr2R	7613612	7613668	I-element	10	5246	11.0	10.0	10.5	0.9	5253	chr2R	7608415	intron	CG1358 -	chr2R	7611042	intron	CG1358 -	chr2R	7613668	intron	CG1358 -	chr2R_10_7610001	chr2R_7610001	RAL-913
1091	chr2R	7815638	7815691	chr2R	7822147	7822210	Burdock	31	6518	9.5	9.5	9.5	3.0	6572	chr2R	7815638	intergenic	CG1882 +	chr2R	7818924	intergenic	not near genes	chr2R	7822210	3` UTR	cathD -	chr2R_31_7815001	chr2R_7815001	RAL-913
1093	chr2R	7862185	7862251	chr2R	7867349	7867414	flea	20	5162	5.0	9.5	7.2	2.4	5229	chr2R	7862185	intron	Dgk -	chr2R	7864800	intron	Dgk -	chr2R	7867414	intron	Dgk -	chr2R_20_7860001	chr2R_7860001	RAL-913
1094	chr2R	7869149	7869202	chr2R	7873985	7874037	Doc	26	4835	14.0	13.5	13.8	1.8	4888	chr2R	7869149	intron	Dgk -	chr2R	7871593	intron	Dgk -	chr2R	7874037	intron	Dgk -	chr2R_26_7870001	chr2R_7870001	RAL-913
1108	chr2R	8330816	8330886	chr2R	8331352	8331422	roo	21	536	6.0	13.5	9.8	1.9	606	chr2R	8330816	intron	pdm3 +	chr2R	8331119	intron	pdm3 +	chr2R	8331422	intron	pdm3 +	chr2R_21_8330001	chr2R_8330001	RAL-913
1111	chr2R	8398169	8398232	chr2R	8403000	8403063	Doc	19	4828	8.5	11.5	10.0	1.7	4894	chr2R	8398169	intron	CG2121 -	chr2R	8400616	intron	CG2121 -	chr2R	8403063	intron	CG2121 -	chr2R_19_8400001	chr2R_8400001	RAL-913
1117	chr2R	8490564	8490578	chr2R	8492338	8492350	Rt1c	5	1774	12.5	14.5	13.5	0.3	1786	chr2R	8490564	intron	mtt -	chr2R	8491457	intron	mtt -	chr2R	8492350	intron	mtt -	chr2R_5_8490001	chr2R_8490001	RAL-913
1123	chr2R	8566010	8566061	chr2R	8567006	8567057	1360	32	995	10.5	16.0	13.2	2.3	1047	chr2R	8566010	5` UTR	Cyp6a14 -	chr2R	8566534	5` UTR	Cyp6a14 -	chr2R	8567057	5` UTR	Cyp6a14 -	chr2R_32_8565001	chr2R_8565001	RAL-913
1126	chr2R	8722720	8722795	chr2R	8723011	8723019	pogo	32	283	8.5	9.5	9.0	3.2	299	chr2R	8722720	intron	CG14767 -	chr2R	8722870	intron	CG14767 -	chr2R	8723019	intron	CG14767 -	chr2R_32_8720001	chr2R_8720001	RAL-913
1128	chr2R	8777875	8777946	chr2R	8784129	8784200	diver	25	6253	6.5	9.0	7.8	2.8	6325	chr2R	8777875	intergenic	not near genes	chr2R	8781038	intergenic	not near genes	chr2R	8784200	intergenic	not near genes	chr2R_25_8780001	chr2R_8780001	RAL-913
1135	chr2R	9151256	9151325	chr2R	9157776	9157845	Burdock	20	6519	11.5	14.5	13.0	1.4	6589	chr2R	9151256	exon	CG30345 +	chr2R	9154550	intergenic	not near genes	chr2R	9157845	intergenic	CG8008 -	chr2R_20_9150001	chr2R_9150001	RAL-913
1137	chr2R	9212667	9212711	chr2R	9213189	9213232	roo	9	530	10.5	8.5	9.5	0.9	565	chr2R	9212667	intergenic	CR45309 +	chr2R	9212950	intergenic	CR45309 +	chr2R	9213232	5` UTR	CR45309 +	chr2R_9_9210001	chr2R_9210001	RAL-913
1147	chr2R	9480035	9480082	chr2R	9490616	9490647	roo	17	10580	11.0	10.5	10.8	1.4	10612	chr2R	9480035	intergenic	not near genes	chr2R	9485341	intergenic	not near genes	chr2R	9490647	intergenic	not near genes	chr2R_17_9485001	chr2R_9485001	RAL-913
1154	chr2R	9726571	9726633	chr2R	9734172	9734234	17.6	30	7601	14.0	11.5	12.8	2.2	7663	chr2R	9726571	intron	sqa -	chr2R	9730402	intron	sqa -	chr2R	9734234	intron	sqa -	chr2R_30_9730001	chr2R_9730001	RAL-913
1156	chr2R	9871000	9871066	chr2R	9871536	9871602	roo	32	535	1.0	10.0	5.5	4.9	602	chr2R	9871000	intron	cbx -	chr2R	9871301	intron	cbx -	chr2R	9871602	intron,5` UTR	cbx -,CG18446 +	chr2R_32_9870001	chr2R_9870001	RAL-913
1158	chr2R	9945396	9945463	chr2R	9945642	9945709	BS	37	246	8.0	5.5	6.8	4.7	313	chr2R	9945396	intron	Mef2 -	chr2R	9945552	intron	Mef2 -	chr2R	9945709	intron	Mef2 -	chr2R_37_9945001	chr2R_9945001	RAL-913
1165	chr2R	10176836	10176903	chr2R	10186053	10186115	roo	38	9217	8.5	11.0	9.8	3.5	9279	chr2R	10176836	intron	KCNQ -	chr2R	10181476	intron	KCNQ -	chr2R	10186115	intron	KCNQ -	chr2R_38_10180001	chr2R_10180001	RAL-913
1192	chr2R	10585511	10585587	chr2R	10594144	10594190	Tirant	5	8621	8.0	8.0	8.0	0.6	8679	chr2R	10585511	intron	psq +	chr2R	10589850	intron	psq +	chr2R	10594190	intron	psq +	chr2R_5_10585001	chr2R_10585001	RAL-913
1193	chr2R	10622307	10622327	chr2R	10637121	10637141	mdg1	8	14811	17.5	6.0	11.8	0.6	14834	chr2R	10622307	intron	CG11883 +	chr2R	10629724	intron	CG11883 +	chr2R	10637141	intron	CG11883 +	chr2R_8_10625001	chr2R_10625001	RAL-913
1200	chr2R	10947974	10948059	chr2R	10955576	10955598	17.6	18	7597	1.5	7.0	4.2	3.5	7624	chr2R	10947974	intergenic	not near genes	chr2R	10951786	intergenic	not near genes	chr2R	10955598	intergenic	not near genes	chr2R_18_10950001	chr2R_10950001	RAL-913
1202	chr2R	10979621	10979673	chr2R	10980136	10980193	297	13	517	8.0	11.0	9.5	1.2	572	chr2R	10979621	intergenic	not near genes	chr2R	10979907	intergenic	not near genes	chr2R	10980193	intergenic	not near genes	chr2R_13_10975001	chr2R_10975001	RAL-913
1203	chr2R	11009778	11009788	chr2R	11019002	11019012	roo	4	9224	23.0	14.0	18.5	0.2	9234	chr2R	11009778	intron	luna -	chr2R	11014395	intron	luna -	chr2R	11019012	intron	luna -	chr2R_4_11010001	chr2R_11010001	RAL-913
1204	chr2R	11009789	11009844	chr2R	11018998	11019053	roo	18	9217	10.5	13.0	11.8	1.4	9264	chr2R	11009789	intron	luna -	chr2R	11014421	intron	luna -	chr2R	11019053	intron	luna -	chr2R_18_11010001	chr2R_11010001	RAL-913
1205	chr2R	11019837	11019877	chr2R	11024950	11024993	jockey	16	5114	9.5	5.5	7.5	1.9	5156	chr2R	11019837	intron	luna -	chr2R	11022415	intron	luna -	chr2R	11024993	intron	luna -	chr2R_16_11020001	chr2R_11020001	RAL-913
1206	chr2R	11019879	11019901	chr2R	11024943	11024992	jockey	7	5104	6.0	3.0	4.5	1.3	5113	chr2R	11019879	intron	luna -	chr2R	11022436	intron	luna -	chr2R	11024992	intron	luna -	chr2R_7_11020001	chr2R_11020001	RAL-913
1217	chr2R	11207779	11207838	chr2R	11208023	11208081	BS	16	244	11.0	11.0	11.0	1.3	302	chr2R	11207779	intron	shn +	chr2R	11207930	intron	shn +	chr2R	11208081	intron	shn +	chr2R_16_11205001	chr2R_11205001	RAL-913
1219	chr2R	11297590	11297639	chr2R	11301961	11302010	flea	32	4370	14.5	4.0	9.2	3.1	4420	chr2R	11297590	intergenic	CG42336 -	chr2R	11299800	intergenic	not near genes	chr2R	11302010	5` UTR	CG7741 +	chr2R_32_11295001	chr2R_11295001	RAL-913
1227	chr2R	11415474	11415543	chr2R	11418673	11418742	opus	30	3197	14.5	11.5	13.0	2.1	3268	chr2R	11415474	intron	Drip -	chr2R	11417108	intron	Drip -	chr2R	11418742	intron	Drip -	chr2R_30_11415001	chr2R_11415001	RAL-913
1229	chr2R	11472604	11472676	chr2R	11473851	11473923	pogo	26	1245	7.0	4.5	5.8	3.8	1319	chr2R	11472604	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473923	intergenic	not near genes	chr2R_26_11470001	chr2R_11470001	RAL-913
1248	chr2R	12481140	12481162	chr2R	12482944	12482978	roo	10	1841	5.0	13.0	9.0	1.0	1838	chr2R	12481140	exon	Dh44-R2 +	chr2R	12482059	intron	Dh44-R2 +	chr2R	12482978	intron	Dh44-R2 +	chr2R_10_12480001	chr2R_12480001	RAL-913
1249	chr2R	12501649	12501718	chr2R	12503860	12503922	Rt1c	10	2204	7.0	12.0	9.5	1.0	2273	chr2R	12501649	intron	fdl -	chr2R	12502786	intron	fdl -	chr2R	12503922	intron	fdl -	chr2R_10_12500001	chr2R_12500001	RAL-913
1255	chr2R	12707470	12707544	chr2R	12715886	12715960	roo	26	8416	7.5	5.0	6.2	3.6	8490	chr2R	12707470	intron	CG42663 +	chr2R	12711715	intron	CG42663 +	chr2R	12715960	intron	CG42663 +	chr2R_26_12710001	chr2R_12710001	RAL-913
1261	chr2R	12789249	12789288	chr2R	12797662	12797700	roo	22	8409	13.5	6.5	10.0	2.0	8451	chr2R	12789249	intron,3` UTR	sca +,CR45137 -	chr2R	12793474	intron,intron	sca +,CR45137 -	chr2R	12797700	intron,3` UTR	sca +,CR45137 -	chr2R_22_12790001	chr2R_12790001	RAL-913
1262	chr2R	12789290	12789321	chr2R	12797658	12797728	roo	16	8398	6.5	6.5	6.5	2.1	8438	chr2R	12789290	intron,3` UTR	sca +,CR45137 -	chr2R	12793509	intron,intron	sca +,CR45137 -	chr2R	12797728	intron,3` UTR	sca +,CR45137 -	chr2R_16_12790001	chr2R_12790001	RAL-913
1263	chr2R	12819402	12819472	chr2R	12824521	12824591	jockey	30	5118	8.5	4.0	6.2	4.2	5189	chr2R	12819402	intergenic	not near genes	chr2R	12821996	intergenic	not near genes	chr2R	12824591	intergenic	not near genes	chr2R_30_12820001	chr2R_12820001	RAL-913
1264	chr2R	12856967	12856978	chr2R	12868321	12868332	accord	9	11354	23.0	13.0	18.0	0.5	11365	chr2R	12856967	intron	CG17574 -	chr2R	12862650	intron	CG17574 -	chr2R	12868332	intron,intron	CG17574 -,CR45140 +	chr2R_9_12860001	chr2R_12860001	RAL-913
1269	chr2R	13136801	13136860	chr2R	13141643	13141708	Doc	28	4845	7.5	11.0	9.2	2.7	4907	chr2R	13136801	exon	Cap-G +	chr2R	13139254	intron	Cap-G +	chr2R	13141708	intron	Cap-G +	chr2R_28_13135001	chr2R_13135001	RAL-913
1283	chr2R	13580451	13580532	chr2R	13580852	13580891	jockey	31	395	8.5	5.5	7.0	3.9	440	chr2R	13580451	3` UTR	CG6191 -	chr2R	13580671	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580891	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_31_13580001	chr2R_13580001	RAL-913
1293	chr2R	13728082	13728137	chr2R	13735792	13735847	opus	14	7710	9.0	0.0	4.5	2.5	7765	chr2R	13728082	intron	fas +	chr2R	13731964	intron	fas +	chr2R	13735847	intron	fas +	chr2R_14_13730001	chr2R_13730001	RAL-913
1301	chr2R	13905564	13905623	chr2R	13907596	13907640	Rt1a	27	2029	8.5	9.5	9.0	2.7	2076	chr2R	13905564	intron	shot -	chr2R	13906602	intron	shot -	chr2R	13907640	intron	shot -	chr2R_27_13905001	chr2R_13905001	RAL-913
1315	chr2R	14467258	14467327	chr2R	14476466	14476509	roo	28	9206	6.0	13.0	9.5	2.7	9251	chr2R	14467258	intergenic	not near genes	chr2R	14471884	intergenic	not near genes	chr2R	14476509	5` UTR	CR44462 +	chr2R_28_14470001	chr2R_14470001	RAL-913
1316	chr2R	14497347	14497406	chr2R	14498563	14498622	1360	30	1216	10.0	12.5	11.2	2.5	1275	chr2R	14497347	3` UTR	Cpsf160 -	chr2R	14497984	intron	Cpsf160 -	chr2R	14498622	3` UTR	Cpsf160 -	chr2R_30_14495001	chr2R_14495001	RAL-913
1343	chr2R	14889169	14889240	chr2R	14897827	14897890	Max-element	18	8653	8.5	0.0	4.2	3.5	8721	chr2R	14889169	intergenic	Cyp6a8 -	chr2R	14893530	intergenic	not near genes	chr2R	14897890	intergenic	not near genes	chr2R_18_14890001	chr2R_14890001	RAL-913
1353	chr2R	15004685	15004749	chr2R	15005064	15005128	jockey	34	379	16.5	12.0	14.2	2.2	443	chr2R	15004685	intergenic	not near genes	chr2R	15004906	intergenic	not near genes	chr2R	15005128	intergenic	not near genes	chr2R_34_15000001	chr2R_15000001	RAL-913
1354	chr2R	15015416	15015481	chr2R	15022890	15022955	mdg1	31	7473	10.0	2.5	6.2	4.3	7539	chr2R	15015416	intron	hbs +	chr2R	15019186	intron	hbs +	chr2R	15022955	intron	hbs +	chr2R_31_15015001	chr2R_15015001	RAL-913
1356	chr2R	15084932	15085004	chr2R	15092031	15092102	297	13	7098	6.0	8.0	7.0	1.6	7170	chr2R	15084932	intergenic	not near genes	chr2R	15088517	intergenic	not near genes	chr2R	15092102	5` UTR	CR44457 +	chr2R_13_15085001	chr2R_15085001	RAL-913
1358	chr2R	15119283	15119308	chr2R	15127813	15127828	Tirant	5	8526	16.0	5.0	10.5	0.4	8545	chr2R	15119283	intron	chn +	chr2R	15123556	intron	chn +	chr2R	15127828	intron	chn +	chr2R_5_15120001	chr2R_15120001	RAL-913
1359	chr2R	15119310	15119348	chr2R	15127802	15127866	Tirant	10	8521	7.0	4.0	5.5	1.5	8556	chr2R	15119310	intron	chn +	chr2R	15123588	intron	chn +	chr2R	15127866	intron	chn +	chr2R_10_15120001	chr2R_15120001	RAL-913
1369	chr2R	15340647	15340664	chr2R	15349278	15349297	Tirant	10	8632	17.5	9.0	13.2	0.7	8650	chr2R	15340647	intron	unc-5 +	chr2R	15344972	intron	unc-5 +	chr2R	15349297	intron	unc-5 +	chr2R_10_15340001	chr2R_15340001	RAL-913
1388	chr2R	16061673	16061711	chr2R	16064359	16064396	Burdock	13	2685	14.0	7.0	10.5	1.1	2723	chr2R	16061673	intergenic	not near genes	chr2R	16063034	intergenic	not near genes	chr2R	16064396	intergenic	not near genes	chr2R_13_16060001	chr2R_16060001	RAL-913
1397	chr2R	16539597	16539657	chr2R	16544856	16544916	copia	29	5258	12.5	10.5	11.5	2.3	5319	chr2R	16539597	intergenic	not near genes	chr2R	16542256	intergenic	not near genes	chr2R	16544916	intergenic	not near genes	chr2R_29_16540001	chr2R_16540001	RAL-913
1420	chr2R	17147197	17147262	chr2R	17152278	17152343	jockey	27	5081	12.0	10.5	11.2	2.2	5146	chr2R	17147197	intergenic	not near genes	chr2R	17149770	intergenic	not near genes	chr2R	17152343	intergenic	not near genes	chr2R_27_17145001	chr2R_17145001	RAL-913
1427	chr2R	17176355	17176377	chr2R	17182595	17182617	diver	16	6240	0.0	19.0	9.5	1.5	6262	chr2R	17176355	intergenic	not near genes	chr2R	17179486	intergenic	not near genes	chr2R	17182617	intergenic	not near genes	chr2R_16_17175001	chr2R_17175001	RAL-913
1429	chr2R	17236465	17236525	chr2R	17241719	17241728	copia	26	5252	10.5	6.5	8.5	2.7	5263	chr2R	17236465	intron	mbl +	chr2R	17239096	intron	mbl +	chr2R	17241728	intron	mbl +	chr2R_26_17235001	chr2R_17235001	RAL-913
1435	chr2R	17485873	17485947	chr2R	17490693	17490765	F-element	24	4818	13.0	6.5	9.8	2.2	4892	chr2R	17485873	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488319	intron	NT5E-2 +	chr2R	17490765	intron	NT5E-2 +	chr2R_24_17485001	chr2R_17485001	RAL-913
1451	chr2R	17782315	17782387	chr2R	17783568	17783640	pogo	25	1252	6.0	1.5	3.8	5.2	1325	chr2R	17782315	intergenic	CG33981 -,fab1 -	chr2R	17782978	intergenic	not near genes	chr2R	17783640	intergenic	mir-31a -	chr2R_25_17780001	chr2R_17780001	RAL-913
1452	chr2R	17783980	17784053	chr2R	17784271	17784344	pogo	18	289	8.5	9.5	9.0	1.8	364	chr2R	17783980	intergenic	mir-31a -	chr2R	17784162	intergenic	mir-31a -	chr2R	17784344	intergenic	mir-31a -	chr2R_18_17780001	chr2R_17780001	RAL-913
1453	chr2R	17798385	17798414	chr2R	17798911	17798941	297	7	522	9.0	10.0	9.5	0.7	556	chr2R	17798385	intron	Dhit +	chr2R	17798663	intron	Dhit +	chr2R	17798941	3` UTR	Dhit +	chr2R_7_17795001	chr2R_17795001	RAL-913
1466	chr2R	18045626	18045689	chr2R	18046028	18046091	jockey	35	402	14.0	12.0	13.0	2.5	465	chr2R	18045626	intergenic	not near genes	chr2R	18045858	intergenic	not near genes	chr2R	18046091	intergenic	CG5767 -	chr2R_35_18045001	chr2R_18045001	RAL-913
1469	chr2R	18111633	18111699	chr2R	18115551	18115617	F-element	17	3918	9.0	10.0	9.5	1.6	3984	chr2R	18111633	intergenic	not near genes	chr2R	18113625	intergenic	not near genes	chr2R	18115617	intergenic	not near genes	chr2R_17_18110001	chr2R_18110001	RAL-913
1478	chr2R	18358348	18358409	chr2R	18372610	18372671	roo	27	14260	11.0	7.5	9.2	2.6	14323	chr2R	18358348	intergenic	not near genes	chr2R	18365510	intergenic	not near genes	chr2R	18372671	intergenic	not near genes	chr2R_27_18365001	chr2R_18365001	RAL-913
1482	chr2R	18487797	18487829	chr2R	18495293	18495330	blood	23	7501	9.0	6.5	7.8	2.6	7533	chr2R	18487797	intron	CG30116 -	chr2R	18491564	intron	CG30116 -	chr2R	18495330	intron	CG30116 -	chr2R_23_18490001	chr2R_18490001	RAL-913
1486	chr2R	18575753	18575766	chr2R	18581990	18581997	3S18	5	6236	18.0	8.5	13.2	0.4	6244	chr2R	18575753	intron	GEFmeso -	chr2R	18578875	intron	GEFmeso -	chr2R	18581997	intron	GEFmeso -	chr2R_5_18575001	chr2R_18575001	RAL-913
1487	chr2R	18575811	18575825	chr2R	18581986	18582063	3S18	14	6212	7.5	7.5	7.5	1.6	6252	chr2R	18575811	intron	GEFmeso -	chr2R	18578937	intron	GEFmeso -	chr2R	18582063	intron	GEFmeso -	chr2R_14_18575001	chr2R_18575001	RAL-913
1488	chr2R	18590825	18590896	chr2R	18600027	18600068	roo	27	9195	5.5	8.0	6.8	3.5	9243	chr2R	18590825	intron	GEFmeso -	chr2R	18595446	intron	GEFmeso -	chr2R	18600068	intron	GEFmeso -	chr2R_27_18595001	chr2R_18595001	RAL-913
1514	chr2R	19715818	19715857	chr2R	19723337	19723376	blood	15	7517	9.5	9.5	9.5	1.4	7558	chr2R	19715818	intergenic	not near genes	chr2R	19719597	intergenic	not near genes	chr2R	19723376	intergenic	not near genes	chr2R_15_19715001	chr2R_19715001	RAL-913
1515	chr2R	19776564	19776576	chr2R	19779936	19779949	jockey	6	3373	22.0	17.0	19.5	0.3	3385	chr2R	19776564	intergenic	not near genes	chr2R	19778256	intergenic	not near genes	chr2R	19779949	intergenic	not near genes	chr2R_6_19775001	chr2R_19775001	RAL-913
1516	chr2R	19776577	19776612	chr2R	19779935	19779985	jockey	14	3372	15.0	17.0	16.0	0.8	3408	chr2R	19776577	intergenic	not near genes	chr2R	19778281	intergenic	not near genes	chr2R	19779985	intergenic	not near genes	chr2R_14_19775001	chr2R_19775001	RAL-913
1519	chr2R	19914807	19914865	chr2R	19922269	19922327	mdg1	17	7462	10.0	11.5	10.8	1.4	7520	chr2R	19914807	intergenic	not near genes	chr2R	19918567	intergenic	not near genes	chr2R	19922327	intergenic	not near genes	chr2R_17_19915001	chr2R_19915001	RAL-913
1522	chr2R	19957385	19957425	chr2R	19962637	19962677	copia	14	5248	9.5	7.5	8.5	1.5	5292	chr2R	19957385	intergenic	CG44623 +	chr2R	19960031	intergenic	not near genes	chr2R	19962677	intergenic	not near genes	chr2R_14_19960001	chr2R_19960001	RAL-913
1523	chr2R	19957434	19957456	chr2R	19962635	19962697	copia	15	5234	6.5	7.5	7.0	1.9	5263	chr2R	19957434	intergenic	CG44623 +	chr2R	19960066	intergenic	not near genes	chr2R	19962697	intergenic	not near genes	chr2R_15_19960001	chr2R_19960001	RAL-913
1526	chr2R	20069205	20069249	chr2R	20071895	20071939	opus	22	2690	0.0	9.0	4.5	4.0	2734	chr2R	20069205	intergenic	not near genes	chr2R	20070572	intergenic	not near genes	chr2R	20071939	intergenic	not near genes	chr2R_22_20070001	chr2R_20070001	RAL-913
1529	chr2R	20368470	20368495	chr2R	20377701	20377726	roo	7	9231	16.0	7.5	11.8	0.5	9256	chr2R	20368470	intergenic	not near genes	chr2R	20373098	intergenic	not near genes	chr2R	20377726	intergenic	not near genes	chr2R_7_20370001	chr2R_20370001	RAL-913
1539	chr2R	20739395	20739426	chr2R	20744213	20744243	F-element	11	4815	15.0	9.0	12.0	0.8	4848	chr2R	20739395	intron	dpr +	chr2R	20741819	intron	dpr +	chr2R	20744243	intron	dpr +	chr2R_11_20740001	chr2R_20740001	RAL-913
1540	chr2R	20739427	20739473	chr2R	20744209	20744285	F-element	11	4812	6.5	8.5	7.5	1.3	4858	chr2R	20739427	intron	dpr +	chr2R	20741856	intron	dpr +	chr2R	20744285	intron	dpr +	chr2R_11_20740001	chr2R_20740001	RAL-913
1543	chr2R	20783264	20783321	chr2R	20788086	20788143	F-element	23	4821	12.5	9.0	10.8	1.9	4879	chr2R	20783264	intergenic	not near genes	chr2R	20785704	intergenic	not near genes	chr2R	20788143	intergenic	CG43666 -	chr2R_23_20785001	chr2R_20785001	RAL-913
1555	chr2R	21151096	21151146	chr2R	21153758	21153829	opus	21	2677	0.5	4.0	2.2	6.6	2733	chr2R	21151096	intron	CG30389 -	chr2R	21152462	intron	CG30389 -	chr2R	21153829	intron	CG30389 -	chr2R_21_21150001	chr2R_21150001	RAL-913
1570	chr2R	21738250	21738309	chr2R	21747450	21747478	roo	14	9191	5.5	9.0	7.2	1.7	9228	chr2R	21738250	intergenic	not near genes	chr2R	21742864	intergenic	not near genes	chr2R	21747478	intergenic	not near genes	chr2R_14_21740001	chr2R_21740001	RAL-913
1571	chr2R	21753043	21753110	chr2R	21753578	21753645	roo	33	534	12.5	11.0	11.8	2.6	602	chr2R	21753043	intergenic	not near genes	chr2R	21753344	intergenic	not near genes	chr2R	21753645	intergenic	not near genes	chr2R_33_21750001	chr2R_21750001	RAL-913
1574	chr2R	21809472	21809513	chr2R	21817762	21817803	roo	21	8290	11.0	5.5	8.2	2.3	8331	chr2R	21809472	intergenic	not near genes	chr2R	21813638	intergenic	not near genes	chr2R	21817803	intergenic	not near genes	chr2R_21_21810001	chr2R_21810001	RAL-913
1597	chr2R	22349659	22349710	chr2R	22351488	22351544	jockey	22	1831	13.0	8.5	10.8	1.9	1885	chr2R	22349659	intron	Liprin-gamma -	chr2R	22350602	intron	Liprin-gamma -	chr2R	22351544	intron	Liprin-gamma -	chr2R_22_22350001	chr2R_22350001	RAL-913
1598	chr2R	22360336	22360350	chr2R	22360819	22360820	jockey	11	481	20.0	8.5	14.2	0.7	484	chr2R	22360336	intron	Liprin-gamma -	chr2R	22360578	intron	Liprin-gamma -	chr2R	22360820	intron	Liprin-gamma -	chr2R_11_22360001	chr2R_22360001	RAL-913
1601	chr2R	22525727	22525771	chr2R	22529313	22529376	jockey	23	3602	9.0	11.5	10.2	2.1	3649	chr2R	22525727	intron	px -	chr2R	22527552	intron	px -	chr2R	22529376	intron	px -	chr2R_23_22525001	chr2R_22525001	RAL-913
1603	chr2R	22580387	22580441	chr2R	22586581	22586635	diver	19	6193	9.0	8.0	8.5	2.0	6248	chr2R	22580387	intron	dnr1 -	chr2R	22583511	intron	dnr1 -	chr2R	22586635	intron	dnr1 -	chr2R_19_22580001	chr2R_22580001	RAL-913
1610	chr2R	22774920	22774990	chr2R	22775389	22775459	jockey	25	469	12.5	9.5	11.0	2.1	539	chr2R	22774920	intron	CG42260 -	chr2R	22775190	intron	CG42260 -	chr2R	22775459	intron	CG42260 -	chr2R_25_22775001	chr2R_22775001	RAL-913
1615	chr2R	22842987	22843045	chr2R	22844999	22845057	flea	16	2012	12.5	16.0	14.2	1.1	2070	chr2R	22842987	intergenic	CG9826 +	chr2R	22844022	intergenic	not near genes	chr2R	22845057	intergenic	not near genes	chr2R_16_22840001	chr2R_22840001	RAL-913
1618	chr2R	22958764	22958811	chr2R	22963901	22963938	flea	9	5133	3.5	7.0	5.2	1.5	5174	chr2R	22958764	intergenic	not near genes	chr2R	22961351	intergenic	not near genes	chr2R	22963938	intergenic	not near genes	chr2R_9_22960001	chr2R_22960001	RAL-913
1632	chr2R	23402562	23402636	chr2R	23407688	23407762	flea	39	5126	10.5	9.5	10.0	3.5	5200	chr2R	23402562	intergenic	CG3520 -	chr2R	23405162	intergenic	not near genes	chr2R	23407762	intergenic	not near genes	chr2R_39_23405001	chr2R_23405001	RAL-913
1642	chr2R	23529568	23529604	chr2R	23537148	23537197	412	15	7592	5.5	7.5	6.5	2.0	7629	chr2R	23529568	intron	bw -	chr2R	23533382	intron	bw -	chr2R	23537197	exon	bw -	chr2R_15_23530001	chr2R_23530001	RAL-913
1649	chr2R	23914260	23914329	chr2R	23921934	23922003	412	18	7672	8.0	6.0	7.0	2.2	7743	chr2R	23914260	exon	kcc +	chr2R	23918132	intron	kcc +	chr2R	23922003	exon	kcc +	chr2R_18_23915001	chr2R_23915001	RAL-913
1654	chr2R	24147041	24147096	chr2R	24154649	24154724	412	24	7618	5.5	8.0	6.8	3.1	7683	chr2R	24147041	intron	Dat +	chr2R	24150882	intron	Dat +	chr2R	24154724	intron	Dat +	chr2R_24_24150001	chr2R_24150001	RAL-913
1655	chr2R	24177190	24177259	chr2R	24184725	24184794	412	35	7534	9.0	7.0	8.0	3.9	7604	chr2R	24177190	3` UTR	Nop60B +	chr2R	24180992	intron	Nop60B +	chr2R	24184794	intron	Nop60B +	chr2R_35_24180001	chr2R_24180001	RAL-913
1660	chr2R	24353389	24353423	chr2R	24361801	24361823	roo	15	8411	18.0	14.5	16.2	0.9	8434	chr2R	24353389	intron,intron	bs +,CR44811 -	chr2R	24357606	intron,intron	bs +,CR44811 -	chr2R	24361823	intron,intron	bs +,CR44811 -	chr2R_15_24355001	chr2R_24355001	RAL-913
1665	chr2R	24647546	24647613	chr2R	24655153	24655220	412	26	7606	10.5	8.0	9.2	2.5	7674	chr2R	24647546	intergenic	not near genes	chr2R	24651383	intergenic	not near genes	chr2R	24655220	intergenic	not near genes	chr2R_26_24650001	chr2R_24650001	RAL-913
1666	chr2R	24727866	24727915	chr2R	24735392	24735443	mdg1	15	7548	5.0	7.5	6.2	2.1	7577	chr2R	24727866	intron	Mid1 -	chr2R	24731654	intron	Mid1 -	chr2R	24735443	intron	Mid1 -	chr2R_15_24730001	chr2R_24730001	RAL-913
1669	chr2R	24763568	24763586	chr2R	24765594	24765612	G2	6	2024	11.5	8.0	9.8	0.6	2044	chr2R	24763568	exon	CG3894 +	chr2R	24764590	intron	CG3894 +	chr2R	24765612	exon	CG3894 +	chr2R_6_24760001	chr2R_24760001	RAL-913
1670	chr2R	24763591	24763630	chr2R	24765587	24765628	G2	11	2017	5.5	7.0	6.2	1.5	2037	chr2R	24763591	exon	CG3894 +	chr2R	24764610	intron	CG3894 +	chr2R	24765628	exon	CG3894 +	chr2R_11_24760001	chr2R_24760001	RAL-913
1678	chr2R	25141614	25141672	chr2R	25159354	25159412	roo	21	17739	10.0	16.0	13.0	1.5	17798	chr2R	25141614	intergenic	not near genes	chr2R	25150513	intergenic	not near genes	chr2R	25159412	intergenic	not near genes	chr2R_21_25150001	chr2R_25150001	RAL-913
1687	chr3L	110169	110235	chr3L	119386	119452	roo	28	9217	15.5	10.0	12.8	2.0	9283	chr3L	110169	intergenic	not near genes	chr3L	114810	intergenic	not near genes	chr3L	119452	intergenic	not near genes	chr3L_28_110001	chr3L_110001	RAL-913
1689	chr3L	402661	402712	chr3L	409744	409774	297	38	7097	11.0	6.0	8.5	4.0	7113	chr3L	402661	intergenic	not near genes	chr3L	406218	intergenic	not near genes	chr3L	409774	intergenic	not near genes	chr3L_38_405001	chr3L_405001	RAL-913
1701	chr3L	789862	789944	chr3L	790397	790480	roo	15	535	0.5	0.5	0.5	10.0	618	chr3L	789862	intergenic	not near genes	chr3L	790171	intergenic	not near genes	chr3L	790480	intergenic	not near genes	chr3L_15_790001	chr3L_790001	RAL-913
1704	chr3L	857952	858031	chr3L	866483	866545	Tirant	19	8520	4.0	9.5	6.8	2.4	8593	chr3L	857952	intergenic	not near genes	chr3L	862248	intergenic	not near genes	chr3L	866545	5` UTR	CG12502 +	chr3L_19_860001	chr3L_860001	RAL-913
1707	chr3L	925147	925208	chr3L	932623	932684	mdg1	24	7475	7.5	9.5	8.5	2.5	7537	chr3L	925147	intron	Glut1 +	chr3L	928916	intron	Glut1 +	chr3L	932684	intron	Glut1 +	chr3L_24_925001	chr3L_925001	RAL-913
1709	chr3L	939731	939742	chr3L	940904	940915	jockey	10	1173	13.5	5.0	9.2	1.0	1184	chr3L	939731	intron	Glut1 +	chr3L	940323	intron	Glut1 +	chr3L	940915	intron	Glut1 +	chr3L_10_940001	chr3L_940001	RAL-913
1710	chr3L	939744	939789	chr3L	940897	940955	jockey	11	1170	7.0	5.0	6.0	1.6	1211	chr3L	939744	intron	Glut1 +	chr3L	940350	intron	Glut1 +	chr3L	940955	intron	Glut1 +	chr3L_11_940001	chr3L_940001	RAL-913
1720	chr3L	1047309	1047327	chr3L	1055171	1055188	412	7	7860	20.0	5.5	12.8	0.5	7879	chr3L	1047309	intron	bab1 -	chr3L	1051248	intron	bab1 -	chr3L	1055188	intron	bab1 -	chr3L_7_1050001	chr3L_1050001	RAL-913
1721	chr3L	1047328	1047335	chr3L	1055169	1055196	412	4	7851	18.5	5.5	12.0	0.3	7868	chr3L	1047328	intron	bab1 -	chr3L	1051262	intron	bab1 -	chr3L	1055196	intron	bab1 -	chr3L_4_1050001	chr3L_1050001	RAL-913
1722	chr3L	1047336	1047384	chr3L	1055167	1055219	412	15	7842	10.0	4.5	7.2	1.8	7883	chr3L	1047336	intron	bab1 -	chr3L	1051278	intron	bab1 -	chr3L	1055219	intron	bab1 -	chr3L_15_1050001	chr3L_1050001	RAL-913
1726	chr3L	1154082	1154157	chr3L	1163285	1163342	roo	31	9200	10.5	11.5	11.0	2.6	9260	chr3L	1154082	intron	bab2 -	chr3L	1158712	intron	bab2 -	chr3L	1163342	intron	bab2 -	chr3L_31_1155001	chr3L_1155001	RAL-913
1731	chr3L	1219550	1219613	chr3L	1227327	1227396	412	19	7775	9.0	5.0	7.0	2.4	7846	chr3L	1219550	intron	mwh +	chr3L	1223473	intron	mwh +	chr3L	1227396	intron	mwh +	chr3L_19_1220001	chr3L_1220001	RAL-913
1738	chr3L	1424754	1424761	chr3L	1430036	1430057	Rt1a	6	5291	2.0	11.0	6.5	0.8	5303	chr3L	1424754	intron	Ptp61F -	chr3L	1427406	intron	Ptp61F -	chr3L	1430057	intron	Ptp61F -	chr3L_6_1425001	chr3L_1425001	RAL-913
1742	chr3L	1485687	1485739	chr3L	1486908	1486960	1360	14	1218	12.0	9.5	10.8	1.2	1273	chr3L	1485687	intron	stet -	chr3L	1486324	intron	stet -	chr3L	1486960	intron	stet -	chr3L_14_1485001	chr3L_1485001	RAL-913
1744	chr3L	1505959	1506023	chr3L	1513606	1513670	17.6	30	7647	8.0	9.0	8.5	3.2	7711	chr3L	1505959	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513670	intron,intron	Psa +,cue -	chr3L_30_1505001	chr3L_1505001	RAL-913
1756	chr3L	1740819	1740875	chr3L	1741104	1741168	pogo	27	289	14.0	16.0	15.0	1.7	349	chr3L	1740819	intron	Gk +	chr3L	1740994	intron	Gk +	chr3L	1741168	intron	Gk +	chr3L_27_1740001	chr3L_1740001	RAL-913
1772	chr3L	2108195	2108269	chr3L	2113459	2113523	copia	26	5260	5.5	12.0	8.8	2.7	5328	chr3L	2108195	intron	sls -	chr3L	2110859	intron	sls -	chr3L	2113523	intron	sls -	chr3L_26_2110001	chr3L_2110001	RAL-913
1789	chr3L	2447462	2447523	chr3L	2456668	2456695	roo	31	9203	8.0	11.5	9.8	2.9	9233	chr3L	2447462	intron	CG45186 +	chr3L	2452078	intron	CG45186 +	chr3L	2456695	intron	CG45186 +	chr3L_31_2450001	chr3L_2450001	RAL-913
1813	chr3L	2751414	2751457	chr3L	2755759	2755797	F-element	23	4345	13.5	19.5	16.5	1.3	4383	chr3L	2751414	intron	Mrtf -	chr3L	2753606	intron	Mrtf -	chr3L	2755797	intron	Mrtf -	chr3L_23_2750001	chr3L_2750001	RAL-913
1821	chr3L	2927796	2927866	chr3L	2936123	2936193	Tirant	34	8327	9.0	11.5	10.2	3.0	8397	chr3L	2927796	intron	Shab +	chr3L	2931994	intron	Shab +	chr3L	2936193	intron	Shab +	chr3L_34_2930001	chr3L_2930001	RAL-913
1822	chr3L	2966675	2966725	chr3L	2974152	2974205	mdg1	11	7479	9.5	1.5	5.5	1.7	7530	chr3L	2966675	intergenic	not near genes	chr3L	2970440	intergenic	not near genes	chr3L	2974205	intergenic	not near genes	chr3L_11_2970001	chr3L_2970001	RAL-913
1825	chr3L	3040281	3040339	chr3L	3042120	3042178	S-element	24	1838	14.0	10.5	12.2	1.8	1897	chr3L	3040281	3` UTR	CG2162 +	chr3L	3041230	intergenic	not near genes	chr3L	3042178	intergenic	Jafrac2 +	chr3L_24_3040001	chr3L_3040001	RAL-913
1827	chr3L	3051696	3051754	chr3L	3051988	3052049	pogo	24	292	11.5	8.0	9.8	2.2	353	chr3L	3051696	3` UTR	CG32485 +	chr3L	3051872	intergenic	CG32485 +	chr3L	3052049	intergenic	CG32485 +,CG1271 +	chr3L_24_3050001	chr3L_3050001	RAL-913
1831	chr3L	3061252	3061315	chr3L	3069867	3069938	Tirant	17	8614	6.5	6.0	6.2	2.4	8686	chr3L	3061252	intron	CG32486 -	chr3L	3065595	intron	CG32486 -	chr3L	3069938	intron	CG32486 -	chr3L_17_3065001	chr3L_3065001	RAL-913
1845	chr3L	3281405	3281414	chr3L	3281951	3281960	Doc	6	545	22.0	9.0	15.5	0.4	555	chr3L	3281405	intron	CG12017 +	chr3L	3281682	intron	CG12017 +	chr3L	3281960	intron	CG12017 +	chr3L_6_3280001	chr3L_3280001	RAL-913
1846	chr3L	3281415	3281454	chr3L	3281945	3281993	Doc	12	538	14.5	8.0	11.2	1.0	578	chr3L	3281415	intron	CG12017 +	chr3L	3281704	intron	CG12017 +	chr3L	3281993	intron	CG12017 +	chr3L_12_3280001	chr3L_3280001	RAL-913
1856	chr3L	3475027	3475073	chr3L	3475521	3475556	jockey	6	488	12.0	8.0	10.0	0.5	529	chr3L	3475027	intron	CG42324 +	chr3L	3475292	intron	CG42324 +	chr3L	3475556	intron	CG42324 +	chr3L_6_3475001	chr3L_3475001	RAL-913
1864	chr3L	3601260	3601269	chr3L	3606621	3606630	copia	8	5361	22.0	12.0	17.0	0.4	5370	chr3L	3601260	intron	Eip63E +	chr3L	3603945	intron	Eip63E +	chr3L	3606630	intron	Eip63E +	chr3L_8_3600001	chr3L_3600001	RAL-913
1865	chr3L	3601274	3601286	chr3L	3606618	3606647	copia	9	5359	18.0	11.0	14.5	0.6	5373	chr3L	3601274	intron	Eip63E +	chr3L	3603960	intron	Eip63E +	chr3L	3606647	intron	Eip63E +	chr3L_9_3600001	chr3L_3600001	RAL-913
1866	chr3L	3601289	3601331	chr3L	3606607	3606661	copia	15	5351	7.5	6.5	7.0	1.9	5372	chr3L	3601289	intron	Eip63E +	chr3L	3603975	intron	Eip63E +	chr3L	3606661	intron	Eip63E +	chr3L_15_3600001	chr3L_3600001	RAL-913
1876	chr3L	3833692	3833769	chr3L	3833983	3834060	pogo	20	288	7.0	9.0	8.0	2.2	368	chr3L	3833692	intron	enc +	chr3L	3833876	intron	enc +	chr3L	3834060	intron	enc +	chr3L_20_3830001	chr3L_3830001	RAL-913
1894	chr3L	4328692	4328757	chr3L	4336239	4336305	412	18	7545	4.5	10.0	7.2	2.2	7613	chr3L	4328692	intron	Cip4 -	chr3L	4332498	intron	Cip4 -	chr3L	4336305	exon	Cip4 -	chr3L_18_4330001	chr3L_4330001	RAL-913
1918	chr3L	4901085	4901151	chr3L	4907325	4907391	diver	15	6239	13.0	7.5	10.2	1.3	6306	chr3L	4901085	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907391	intergenic	not near genes	chr3L_15_4900001	chr3L_4900001	RAL-913
1922	chr3L	5034117	5034180	chr3L	5043319	5043380	roo	27	9201	9.5	8.0	8.8	2.8	9263	chr3L	5034117	intron	Con -	chr3L	5038748	intron	Con -	chr3L	5043380	intron	Con -	chr3L_27_5035001	chr3L_5035001	RAL-913
1923	chr3L	5045414	5045476	chr3L	5050245	5050307	Doc	24	4830	16.0	12.0	14.0	1.6	4893	chr3L	5045414	5` UTR	Con -	chr3L	5047860	intron	Con -	chr3L	5050307	intron	Con -	chr3L_24_5045001	chr3L_5045001	RAL-913
1936	chr3L	5299118	5299180	chr3L	5306604	5306614	Quasimodo	13	7482	7.0	4.0	5.5	2.0	7496	chr3L	5299118	intergenic	not near genes	chr3L	5302866	intergenic	not near genes	chr3L	5306614	intergenic	not near genes	chr3L_13_5300001	chr3L_5300001	RAL-913
1942	chr3L	5458057	5458082	chr3L	5466702	5466714	Max-element	6	8644	5.0	13.5	9.2	0.6	8657	chr3L	5458057	intergenic	not near genes	chr3L	5462386	intergenic	not near genes	chr3L	5466714	intergenic	not near genes	chr3L_6_5460001	chr3L_5460001	RAL-913
1947	chr3L	5537679	5537744	chr3L	5538071	5538136	jockey	24	392	13.0	13.0	13.0	1.7	457	chr3L	5537679	intergenic	not near genes	chr3L	5537908	intergenic	not near genes	chr3L	5538136	intergenic	CG10625 -	chr3L_24_5535001	chr3L_5535001	RAL-913
1955	chr3L	5909983	5910064	chr3L	5910274	5910355	pogo	29	291	8.5	4.5	6.5	3.9	372	chr3L	5909983	intron	CG13288 +	chr3L	5910169	intron	CG13288 +	chr3L	5910355	intron	CG13288 +	chr3L_29_5910001	chr3L_5910001	RAL-913
1956	chr3L	5926281	5926344	chr3L	5926510	5926581	BS	25	234	8.0	9.5	8.8	2.6	300	chr3L	5926281	intron	Vap-33B +	chr3L	5926431	intron	Vap-33B +	chr3L	5926581	intron	Vap-33B +	chr3L_25_5925001	chr3L_5925001	RAL-913
1962	chr3L	6001638	6001717	chr3L	6004386	6004467	jockey	22	2750	6.5	3.5	5.0	3.7	2829	chr3L	6001638	intron	PVRAP +	chr3L	6003052	intron	PVRAP +	chr3L	6004467	intron	PVRAP +	chr3L_22_6000001	chr3L_6000001	RAL-913
1965	chr3L	6040317	6040380	chr3L	6042723	6042786	Doc	26	2404	8.5	10.0	9.2	2.5	2469	chr3L	6040317	intergenic	Jon65Aiv +	chr3L	6041552	intergenic	not near genes	chr3L	6042786	intergenic	not near genes	chr3L_26_6040001	chr3L_6040001	RAL-913
1971	chr3L	6220876	6220936	chr3L	6230078	6230138	roo	28	9202	9.5	7.5	8.5	2.9	9262	chr3L	6220876	5` UTR	pncr008:3L +	chr3L	6225507	intergenic	not near genes	chr3L	6230138	intergenic	not near genes	chr3L_28_6225001	chr3L_6225001	RAL-913
1973	chr3L	6334966	6334975	chr3L	6335487	6335496	297	4	520	13.0	6.0	9.5	0.4	530	chr3L	6334966	intron	CG13300 -	chr3L	6335231	intron	CG13300 -	chr3L	6335496	intron	CG13300 -	chr3L_4_6335001	chr3L_6335001	RAL-913
1974	chr3L	6334976	6335035	chr3L	6335485	6335556	297	23	520	5.0	6.0	5.5	3.5	580	chr3L	6334976	intron	CG13300 -	chr3L	6335266	intron	CG13300 -	chr3L	6335556	intron	CG13300 -	chr3L_23_6335001	chr3L_6335001	RAL-913
1980	chr3L	6405617	6405680	chr3L	6432132	6432194	roo	14	26514	9.0	9.0	9.0	1.4	26577	chr3L	6405617	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432194	intron	CG42747 +	chr3L_14_6415001	chr3L_6415001	RAL-913
1989	chr3L	6620564	6620598	chr3L	6621054	6621081	Rt1c	18	488	5.5	10.0	7.8	2.0	517	chr3L	6620564	intergenic	not near genes	chr3L	6620822	intergenic	not near genes	chr3L	6621081	intergenic	not near genes	chr3L_18_6620001	chr3L_6620001	RAL-913
1996	chr3L	6781075	6781137	chr3L	6783138	6783200	Doc	34	2063	14.0	9.5	11.8	2.7	2125	chr3L	6781075	intergenic	not near genes	chr3L	6782138	intergenic	not near genes	chr3L	6783200	intergenic	not near genes	chr3L_34_6780001	chr3L_6780001	RAL-913
2001	chr3L	6855881	6855943	chr3L	6860715	6860777	Doc	19	4831	5.0	5.0	5.0	3.2	4896	chr3L	6855881	intergenic	not near genes	chr3L	6858329	intergenic	not near genes	chr3L	6860777	intergenic	not near genes	chr3L_19_6855001	chr3L_6855001	RAL-913
2004	chr3L	6887485	6887534	chr3L	6895015	6895076	roo	29	7540	11.5	13.5	12.5	2.1	7591	chr3L	6887485	intergenic	not near genes	chr3L	6891280	intergenic	not near genes	chr3L	6895076	intergenic	not near genes	chr3L_29_6890001	chr3L_6890001	RAL-913
2013	chr3L	6994846	6994904	chr3L	6995497	6995565	BS	8	660	15.0	21.5	18.2	0.4	719	chr3L	6994846	intergenic	bin +	chr3L	6995206	intergenic	not near genes	chr3L	6995565	intergenic	not near genes	chr3L_8_6995001	chr3L_6995001	RAL-913
2018	chr3L	7129912	7129963	chr3L	7130154	7130205	BS	19	242	12.0	16.0	14.0	1.3	293	chr3L	7129912	intergenic	CG15829 +	chr3L	7130058	intergenic	CG15829 +	chr3L	7130205	intergenic	not near genes	chr3L_19_7130001	chr3L_7130001	RAL-913
2033	chr3L	7377269	7377342	chr3L	7380424	7380497	297	43	3155	10.5	11.0	10.8	3.6	3228	chr3L	7377269	intron	SMSr -	chr3L	7378883	intron	SMSr -	chr3L	7380497	intron	SMSr -	chr3L_43_7375001	chr3L_7375001	RAL-913
2039	chr3L	7498721	7498774	chr3L	7503549	7503602	F-element	23	4828	16.5	12.5	14.5	1.5	4881	chr3L	7498721	5` UTR	CG8539 -	chr3L	7501162	intergenic	not near genes	chr3L	7503602	intergenic	not near genes	chr3L_23_7500001	chr3L_7500001	RAL-913
2053	chr3L	7793671	7793735	chr3L	7800773	7800837	297	30	7102	14.0	15.5	14.8	1.9	7166	chr3L	7793671	intron	CG32369 -	chr3L	7797254	intron	CG32369 -	chr3L	7800837	intron	CG32369 -	chr3L_30_7795001	chr3L_7795001	RAL-913
2058	chr3L	7886470	7886545	chr3L	7889038	7889058	Stalker4	27	2563	5.0	15.0	10.0	2.5	2588	chr3L	7886470	intron	CG32365 +	chr3L	7887764	intron	CG32365 +	chr3L	7889058	intron	CG32365 +	chr3L_27_7885001	chr3L_7885001	RAL-913
2059	chr3L	7916785	7916849	chr3L	7926006	7926070	roo	29	9220	15.0	10.5	12.8	2.1	9285	chr3L	7916785	3` UTR	syd -	chr3L	7921428	intron	syd -	chr3L	7926070	3` UTR	syd -	chr3L_29_7920001	chr3L_7920001	RAL-913
2062	chr3L	7985329	7985385	chr3L	7987708	7987763	NOF	24	2377	15.5	17.0	16.2	1.4	2434	chr3L	7985329	intron	nmo +	chr3L	7986546	intron	nmo +	chr3L	7987763	intron	nmo +	chr3L_24_7985001	chr3L_7985001	RAL-913
2065	chr3L	8019655	8019730	chr3L	8024118	8024184	NOF	20	4454	8.0	11.0	9.5	1.9	4529	chr3L	8019655	intron	nmo +	chr3L	8021920	intron	nmo +	chr3L	8024184	intron	nmo +	chr3L_20_8020001	chr3L_8020001	RAL-913
2077	chr3L	8233551	8233585	chr3L	8238862	8238897	Rt1a	8	5312	7.0	29.5	18.2	0.4	5346	chr3L	8233551	intron	CG7213 -	chr3L	8236224	intron	CG7213 -	chr3L	8238897	intron,intron	CG7213 -,Dscam4 +	chr3L_8_8235001	chr3L_8235001	RAL-913
2091	chr3L	8481745	8481806	chr3L	8490954	8490964	roo	19	9196	6.5	11.5	9.0	1.9	9219	chr3L	8481745	intron	CG43163 -	chr3L	8486354	intron	CG43163 -	chr3L	8490964	intron	CG43163 -	chr3L_19_8485001	chr3L_8485001	RAL-913
2092	chr3L	8498264	8498272	chr3L	8505781	8505789	blood	10	7517	19.0	9.0	14.0	0.7	7525	chr3L	8498264	intron	CG43163 -	chr3L	8502026	intron	CG43163 -	chr3L	8505789	intron	CG43163 -	chr3L_10_8500001	chr3L_8500001	RAL-913
2093	chr3L	8498275	8498321	chr3L	8505774	8505838	blood	21	7514	11.5	7.5	9.5	2.0	7563	chr3L	8498275	intron	CG43163 -	chr3L	8502056	intron	CG43163 -	chr3L	8505838	intron	CG43163 -	chr3L_21_8500001	chr3L_8500001	RAL-913
2105	chr3L	8791234	8791306	chr3L	8796704	8796775	I-element	21	5469	7.5	0.0	3.8	4.4	5541	chr3L	8791234	exon	Fhos +	chr3L	8794004	intron	Fhos +	chr3L	8796775	intron	Fhos +	chr3L_21_8790001	chr3L_8790001	RAL-913
2127	chr3L	9076880	9076946	chr3L	9084490	9084556	412	21	7606	10.5	10.0	10.2	1.9	7676	chr3L	9076880	exon	Tequila +	chr3L	9080718	intron	Tequila +	chr3L	9084556	exon	Tequila +	chr3L_21_9080001	chr3L_9080001	RAL-913
2132	chr3L	9130518	9130566	chr3L	9134320	9134374	412	14	3807	10.0	6.0	8.0	1.6	3856	chr3L	9130518	intergenic	bol -	chr3L	9132446	intergenic	not near genes	chr3L	9134374	intergenic	Dhpr +	chr3L_14_9130001	chr3L_9130001	RAL-913
2133	chr3L	9164656	9164686	chr3L	9166173	9166188	hobo	16	1516	11.5	0.0	5.8	2.4	1532	chr3L	9164656	intron	Rdl -	chr3L	9165422	intron	Rdl -	chr3L	9166188	intron	Rdl -	chr3L_16_9165001	chr3L_9165001	RAL-913
2135	chr3L	9219201	9219269	chr3L	9219915	9219991	jockey	22	714	10.0	9.0	9.5	2.1	790	chr3L	9219201	intergenic	not near genes	chr3L	9219596	intergenic	not near genes	chr3L	9219991	intergenic	not near genes	chr3L_22_9215001	chr3L_9215001	RAL-913
2138	chr3L	9270570	9270649	chr3L	9278375	9278402	roo	24	7793	8.5	7.0	7.8	2.7	7832	chr3L	9270570	intron	GluRIB +	chr3L	9274486	intron	GluRIB +	chr3L	9278402	exon	GluRIB +	chr3L_24_9270001	chr3L_9270001	RAL-913
2152	chr3L	9443490	9443532	chr3L	9445327	9445369	S-element	22	1837	13.5	17.0	15.2	1.4	1879	chr3L	9443490	intron	CG33926 +	chr3L	9444430	intron	CG33926 +	chr3L	9445369	intron	CG33926 +	chr3L_22_9440001	chr3L_9440001	RAL-913
2153	chr3L	9501670	9501725	chr3L	9502206	9502260	roo	30	536	12.5	13.5	13.0	2.1	590	chr3L	9501670	intron	path -	chr3L	9501965	intron	path -	chr3L	9502260	intron	path -	chr3L_30_9500001	chr3L_9500001	RAL-913
2158	chr3L	9526474	9526519	chr3L	9528189	9528234	Doc	5	1715	1.0	7.0	4.0	1.0	1760	chr3L	9526474	intergenic	not near genes	chr3L	9527354	intergenic	not near genes	chr3L	9528234	intergenic	not near genes	chr3L_5_9525001	chr3L_9525001	RAL-913
2159	chr3L	9533718	9533750	chr3L	9541316	9541336	412	9	7606	17.5	10.0	13.8	0.6	7618	chr3L	9533718	intergenic	not near genes	chr3L	9537527	intergenic	not near genes	chr3L	9541336	intergenic	not near genes	chr3L_9_9535001	chr3L_9535001	RAL-913
2160	chr3L	9533752	9533777	chr3L	9541315	9541371	412	11	7590	10.0	10.0	10.0	1.0	7619	chr3L	9533752	intergenic	not near genes	chr3L	9537562	intergenic	not near genes	chr3L	9541371	intergenic	not near genes	chr3L_11_9535001	chr3L_9535001	RAL-913
2163	chr3L	9571882	9571925	chr3L	9572269	9572323	jockey	28	398	10.5	14.5	12.5	2.1	441	chr3L	9571882	intron	CG42673 +	chr3L	9572102	intron	CG42673 +	chr3L	9572323	intron	CG42673 +	chr3L_28_9570001	chr3L_9570001	RAL-913
2164	chr3L	9575885	9575934	chr3L	9581000	9581036	jockey	19	5125	4.5	11.5	8.0	2.1	5151	chr3L	9575885	intron	CG42673 +	chr3L	9578460	intron	CG42673 +	chr3L	9581036	intron	CG42673 +	chr3L_19_9575001	chr3L_9575001	RAL-913
2182	chr3L	9929632	9929696	chr3L	9938462	9938526	roo	30	8829	13.5	11.0	12.2	2.3	8894	chr3L	9929632	intron	CG34356 +	chr3L	9934079	intron	CG34356 +	chr3L	9938526	intron	CG34356 +	chr3L_30_9930001	chr3L_9930001	RAL-913
2195	chr3L	10060087	10060117	chr3L	10067716	10067746	17.6	7	7629	31.5	29.0	30.2	0.2	7659	chr3L	10060087	intron	dpr6 +	chr3L	10063916	intron	dpr6 +	chr3L	10067746	intron	dpr6 +	chr3L_7_10060001	chr3L_10060001	RAL-913
2217	chr3L	10414897	10414965	chr3L	10417317	10417387	Doc	28	2422	9.5	8.0	8.8	2.9	2490	chr3L	10414897	intergenic	CG12362 +	chr3L	10416142	intergenic	not near genes	chr3L	10417387	intergenic	not near genes	chr3L_28_10415001	chr3L_10415001	RAL-913
2268	chr3L	11087014	11087084	chr3L	11088852	11088923	S-element	29	1837	8.5	6.5	7.5	3.4	1909	chr3L	11087014	intron	JIL-1 -	chr3L	11087968	intron	JIL-1 -	chr3L	11088923	intron	JIL-1 -	chr3L_29_11085001	chr3L_11085001	RAL-913
2270	chr3L	11105248	11105318	chr3L	11107009	11107067	X-element	34	1760	10.0	12.5	11.2	2.8	1819	chr3L	11105248	intergenic	not near genes	chr3L	11106158	intergenic	not near genes	chr3L	11107067	exon	CG32073 -	chr3L_34_11105001	chr3L_11105001	RAL-913
2271	chr3L	11103810	11103878	chr3L	11107583	11107651	X-element	15	3773	51.5	52.5	52.0	0.3	3841	chr3L	11103810	exon	CG32071 -	chr3L	11105730	intergenic	not near genes	chr3L	11107651	intergenic	CG32073 -	chr3L_15_11105001	chr3L_11105001	RAL-913
2278	chr3L	11264424	11264488	chr3L	11271426	11271490	17.6	25	7000	9.5	11.5	10.5	2.2	7066	chr3L	11264424	intergenic	not near genes	chr3L	11267957	intergenic	not near genes	chr3L	11271490	intergenic	not near genes	chr3L_25_11265001	chr3L_11265001	RAL-913
2279	chr3L	11277416	11277475	chr3L	11278455	11278495	Rt1a	13	1035	3.5	9.0	6.2	1.8	1079	chr3L	11277416	intergenic	not near genes	chr3L	11277956	intergenic	not near genes	chr3L	11278495	intergenic	not near genes	chr3L_13_11275001	chr3L_11275001	RAL-913
2285	chr3L	11329677	11329715	chr3L	11332911	11332930	jockey	10	3242	6.0	7.5	6.8	1.3	3253	chr3L	11329677	intergenic	not near genes	chr3L	11331304	intergenic	not near genes	chr3L	11332930	intergenic	not near genes	chr3L_10_11330001	chr3L_11330001	RAL-913
2303	chr3L	11564594	11564663	chr3L	11572716	11572785	412	17	8122	29.0	29.5	29.2	0.6	8191	chr3L	11564594	5` UTR	CG33267 +	chr3L	11568690	intron	CG33267 +	chr3L	11572785	3` UTR	CG33267 +	chr3L_17_11565001	chr3L_11565001	RAL-913
2311	chr3L	11723046	11723107	chr3L	11727891	11727952	Doc	32	4845	11.0	16.0	13.5	2.2	4906	chr3L	11723046	3` UTR	Bmcp +	chr3L	11725499	intron	Bmcp +	chr3L	11727952	3` UTR	Bmcp +	chr3L_32_11725001	chr3L_11725001	RAL-913
2325	chr3L	11864531	11864580	chr3L	11865854	11865925	pogo	22	1340	6.5	8.0	7.2	2.7	1394	chr3L	11864531	intron	CG44837 -	chr3L	11865228	intron	CG44837 -	chr3L	11865925	intron	CG44837 -	chr3L_22_11865001	chr3L_11865001	RAL-913
2390	chr3L	12874885	12874944	chr3L	12877227	12877286	jockey	21	2341	11.5	10.0	10.8	1.8	2401	chr3L	12874885	intergenic	not near genes	chr3L	12876086	intergenic	not near genes	chr3L	12877286	intergenic	not near genes	chr3L_21_12875001	chr3L_12875001	RAL-913
2395	chr3L	12919256	12919307	chr3L	12924762	12924841	Rt1c	4	5520	8.0	8.0	8.0	0.4	5585	chr3L	12919256	intergenic	not near genes	chr3L	12922048	intergenic	not near genes	chr3L	12924841	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-913
2401	chr3L	12957747	12957808	chr3L	12962279	12962340	copia	22	4532	10.0	11.0	10.5	1.9	4593	chr3L	12957747	intergenic	not near genes	chr3L	12960044	intergenic	not near genes	chr3L	12962340	intergenic	not near genes	chr3L_22_12960001	chr3L_12960001	RAL-913
2451	chr3L	13525114	13525178	chr3L	13532960	13532997	roo	33	7843	15.0	10.0	12.5	2.4	7883	chr3L	13525114	intergenic	not near genes	chr3L	13529056	intergenic	not near genes	chr3L	13532997	intergenic	not near genes	chr3L_33_13525001	chr3L_13525001	RAL-913
2452	chr3L	13574582	13574616	chr3L	13580141	13580177	Rt1c	6	5560	12.0	5.0	8.5	0.6	5595	chr3L	13574582	intron	bru-3 -	chr3L	13577380	intron	bru-3 -	chr3L	13580177	intron	bru-3 -	chr3L_6_13575001	chr3L_13575001	RAL-913
2469	chr3L	13804499	13804568	chr3L	13822835	13822904	roo	40	18336	7.0	10.5	8.8	4.1	18405	chr3L	13804499	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822904	intergenic	not near genes	chr3L_40_13810001	chr3L_13810001	RAL-913
2495	chr3L	14245534	14245594	chr3L	14245678	14245738	1360	21	143	11.5	15.0	13.2	1.5	204	chr3L	14245534	3` UTR	CR44561 -	chr3L	14245636	3` UTR	CR44561 -	chr3L	14245738	intergenic	CR44561 -,CR44560 +	chr3L_21_14245001	chr3L_14245001	RAL-913
2498	chr3L	14267325	14267385	chr3L	14271815	14271875	F-element	26	4490	11.5	16.0	13.8	1.8	4550	chr3L	14267325	intergenic	not near genes	chr3L	14269600	intergenic	not near genes	chr3L	14271875	intergenic	not near genes	chr3L_26_14265001	chr3L_14265001	RAL-913
2501	chr3L	14295941	14296005	chr3L	14296473	14296536	roo	24	533	12.0	13.5	12.8	1.7	595	chr3L	14295941	intron	fz +	chr3L	14296238	intron	fz +	chr3L	14296536	intron	fz +	chr3L_24_14295001	chr3L_14295001	RAL-913
2502	chr3L	14311994	14312046	chr3L	14316841	14316870	X-element	24	4855	3.5	6.0	4.8	4.1	4876	chr3L	14311994	exon	fz +	chr3L	14314432	intron	fz +	chr3L	14316870	intron	fz +	chr3L_24_14310001	chr3L_14310001	RAL-913
2516	chr3L	14468409	14468478	chr3L	14473665	14473732	copia	29	5256	8.0	9.5	8.8	3.0	5323	chr3L	14468409	intron	bbg -	chr3L	14471070	intron	bbg -	chr3L	14473732	intron	bbg -	chr3L_29_14470001	chr3L_14470001	RAL-913
2539	chr3L	14721151	14721169	chr3L	14723044	14723061	Rt1c	5	1890	16.0	10.5	13.2	0.4	1910	chr3L	14721151	intron	ome +	chr3L	14722106	intron	ome +	chr3L	14723061	intron	ome +	chr3L_5_14720001	chr3L_14720001	RAL-913
2540	chr3L	14721172	14721180	chr3L	14723039	14723073	Rt1c	5	1885	14.5	8.5	11.5	0.4	1901	chr3L	14721172	intron	ome +	chr3L	14722122	intron	ome +	chr3L	14723073	intron	ome +	chr3L_5_14720001	chr3L_14720001	RAL-913
2541	chr3L	14721182	14721200	chr3L	14723029	14723093	Rt1c	5	1871	10.0	6.5	8.2	0.5	1911	chr3L	14721182	intron	ome +	chr3L	14722138	intron	ome +	chr3L	14723093	intron	ome +	chr3L_5_14720001	chr3L_14720001	RAL-913
2543	chr3L	14725524	14725613	chr3L	14728587	14728657	Doc	30	3052	0.0	7.5	3.8	6.2	3133	chr3L	14725524	intron	ome +	chr3L	14727090	intron	ome +	chr3L	14728657	intron	ome +	chr3L_30_14725001	chr3L_14725001	RAL-913
2546	chr3L	14825118	14825144	chr3L	14832895	14832921	Stalker2	7	7777	10.0	18.5	14.2	0.5	7803	chr3L	14825118	intron	CG17839 +	chr3L	14829020	intron	CG17839 +	chr3L	14832921	intron	CG17839 +	chr3L_7_14825001	chr3L_14825001	RAL-913
2558	chr3L	14954321	14954375	chr3L	14956040	14956094	transib2	27	1719	12.0	7.5	9.8	2.5	1773	chr3L	14954321	intergenic	not near genes	chr3L	14955208	intergenic	not near genes	chr3L	14956094	intergenic	not near genes	chr3L_27_14955001	chr3L_14955001	RAL-913
2559	chr3L	14954376	14954387	chr3L	14956038	14956106	transib2	6	1710	9.5	7.0	8.2	0.7	1730	chr3L	14954376	intergenic	not near genes	chr3L	14955241	intergenic	not near genes	chr3L	14956106	intergenic	not near genes	chr3L_6_14955001	chr3L_14955001	RAL-913
2562	chr3L	14970757	14970765	chr3L	14971119	14971127	F-element	7	362	0.0	18.0	9.0	0.7	370	chr3L	14970757	intergenic	Tom +	chr3L	14970942	intergenic	not near genes	chr3L	14971127	intergenic	not near genes	chr3L_7_14970001	chr3L_14970001	RAL-913
2565	chr3L	15056692	15056713	chr3L	15056906	15056917	Transib-N1_DM	7	212	0.0	13.0	6.5	0.9	225	chr3L	15056692	intron	Sytbeta -	chr3L	15056804	intron	Sytbeta -	chr3L	15056917	intron	Sytbeta -	chr3L_7_15055001	chr3L_15055001	RAL-913
2567	chr3L	15085004	15085078	chr3L	15086220	15086294	1360	39	1214	14.0	10.5	12.2	3.0	1290	chr3L	15085004	intron	cp309 -	chr3L	15085649	intron	cp309 -	chr3L	15086294	intron	cp309 -	chr3L_39_15085001	chr3L_15085001	RAL-913
2588	chr3L	15295727	15295791	chr3L	15298620	15298684	gypsy5	31	2892	8.5	11.0	9.8	2.9	2957	chr3L	15295727	intergenic	not near genes	chr3L	15297206	intergenic	not near genes	chr3L	15298684	intergenic	Best4 +	chr3L_31_15295001	chr3L_15295001	RAL-913
2597	chr3L	15423715	15423784	chr3L	15426609	15426678	opus	39	2894	5.5	3.5	4.5	7.1	2963	chr3L	15423715	intergenic	not near genes	chr3L	15425196	intergenic	not near genes	chr3L	15426678	intergenic	not near genes	chr3L_39_15425001	chr3L_15425001	RAL-913
2606	chr3L	15554879	15554943	chr3L	15556716	15556780	S-element	12	1837	16.0	28.0	22.0	0.5	1901	chr3L	15554879	intron	AGO2 +	chr3L	15555830	intron	AGO2 +	chr3L	15556780	intron	AGO2 +	chr3L_12_15555001	chr3L_15555001	RAL-913
2630	chr3L	15899197	15899235	chr3L	15899797	15899846	jockey	14	604	13.5	8.5	11.0	1.2	649	chr3L	15899197	intergenic	pHCl -	chr3L	15899522	intergenic	pHCl -	chr3L	15899846	intergenic	sff -	chr3L_14_15895001	chr3L_15895001	RAL-913
2632	chr3L	15929160	15929219	chr3L	15938357	15938416	roo	23	9197	11.5	9.5	10.5	2.0	9256	chr3L	15929160	intron	Pka-C3 -	chr3L	15933788	intron	Pka-C3 -	chr3L	15938416	intron	Pka-C3 -	chr3L_23_15930001	chr3L_15930001	RAL-913
2644	chr3L	16184064	16184126	chr3L	16188933	16188995	X-element	25	4876	8.5	14.0	11.2	2.0	4931	chr3L	16184064	intergenic	not near genes	chr3L	16186530	intergenic	not near genes	chr3L	16188995	intergenic	not near genes	chr3L_25_16185001	chr3L_16185001	RAL-913
2666	chr3L	16443798	16443876	chr3L	16446188	16446266	Doc	31	2389	6.0	10.0	8.0	3.4	2468	chr3L	16443798	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446266	intron,intron	CG33158 +,dsx-c73A -	chr3L_31_16445001	chr3L_16445001	RAL-913
2672	chr3L	16493937	16494001	chr3L	16494504	16494568	jockey	31	566	9.5	9.5	9.5	3.0	631	chr3L	16493937	intron,exon,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494252	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494568	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_31_16490001	chr3L_16490001	RAL-913
2680	chr3L	16616468	16616536	chr3L	16621846	16621914	297	31	5377	13.5	10.5	12.0	2.4	5446	chr3L	16616468	3` UTR	Abl -	chr3L	16619191	3` UTR	Abl -	chr3L	16621914	3` UTR	Abl -	chr3L_31_16615001	chr3L_16615001	RAL-913
2683	chr3L	16683978	16684038	chr3L	16689249	16689309	copia	30	5271	7.5	11.0	9.2	2.9	5331	chr3L	16683978	intron,intron	Lasp -,CG43954 -	chr3L	16686644	intron,intron	Lasp -,CG43954 -	chr3L	16689309	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_30_16685001	chr3L_16685001	RAL-913
2707	chr3L	16945681	16945760	chr3L	16954882	16954957	roo	19	9195	3.5	10.5	7.0	2.4	9276	chr3L	16945681	exon	Obp73a +	chr3L	16950319	intergenic	not near genes	chr3L	16954957	5` UTR	Nc73EF +	chr3L_19_16950001	chr3L_16950001	RAL-913
2713	chr3L	17034889	17034961	chr3L	17035122	17035199	G2	22	238	7.5	13.5	10.5	1.9	310	chr3L	17034889	intergenic	not near genes	chr3L	17035044	intergenic	not near genes	chr3L	17035199	intergenic	beg +	chr3L_22_17035001	chr3L_17035001	RAL-913
2715	chr3L	17084961	17085029	chr3L	17094160	17094228	roo	32	9199	10.5	12.5	11.5	2.6	9267	chr3L	17084961	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094228	intron	Rbp6 -	chr3L_32_17085001	chr3L_17085001	RAL-913
2736	chr3L	17516945	17516991	chr3L	17524548	17524599	412	17	7607	11.0	10.0	10.5	1.5	7654	chr3L	17516945	intron	CG7564 +	chr3L	17520772	intron	CG7564 +	chr3L	17524599	3` UTR	CG7564 +	chr3L_17_17520001	chr3L_17520001	RAL-913
2745	chr3L	17698228	17698234	chr3L	17698860	17698866	Juan	4	632	25.0	7.5	16.2	0.2	638	chr3L	17698228	intron	Ccn +	chr3L	17698547	intron	Ccn +	chr3L	17698866	intron	Ccn +	chr3L_4_17695001	chr3L_17695001	RAL-913
2747	chr3L	17730704	17730770	chr3L	17738242	17738308	mdg1	11	7538	30.5	16.5	23.5	0.4	7604	chr3L	17730704	intron	Ccn +	chr3L	17734506	intron	Ccn +	chr3L	17738308	intron	Ccn +	chr3L_11_17730001	chr3L_17730001	RAL-913
2748	chr3L	17730812	17730872	chr3L	17738192	17738252	mdg1	24	7380	8.0	7.0	7.5	2.8	7440	chr3L	17730812	intron	Ccn +	chr3L	17734532	intron	Ccn +	chr3L	17738252	intron	Ccn +	chr3L_24_17730001	chr3L_17730001	RAL-913
2754	chr3L	17799765	17799838	chr3L	17801602	17801675	S-element	36	1837	10.5	7.0	8.8	3.7	1910	chr3L	17799765	intron	NUCB1 -	chr3L	17800720	intron	NUCB1 -	chr3L	17801675	intron	NUCB1 -	chr3L_36_17800001	chr3L_17800001	RAL-913
2757	chr3L	17918334	17918393	chr3L	17921187	17921229	opus	17	2850	11.5	10.5	11.0	1.4	2895	chr3L	17918334	intergenic	not near genes	chr3L	17919782	intergenic	not near genes	chr3L	17921229	intergenic	not near genes	chr3L_17_17915001	chr3L_17915001	RAL-913
2769	chr3L	18047662	18047732	chr3L	18056769	18056839	roo	28	9107	7.5	6.5	7.0	3.5	9177	chr3L	18047662	intron	Eip75B -	chr3L	18052250	intron	Eip75B -	chr3L	18056839	intron	Eip75B -	chr3L_28_18050001	chr3L_18050001	RAL-913
2795	chr3L	18189546	18189583	chr3L	18190197	18190234	S-element	11	650	23.0	11.5	17.2	0.6	688	chr3L	18189546	intergenic	not near genes	chr3L	18189890	intergenic	not near genes	chr3L	18190234	intergenic	not near genes	chr3L_11_18185001	chr3L_18185001	RAL-913
2822	chr3L	18506092	18506153	chr3L	18509605	18509666	F-element	32	3513	9.0	13.0	11.0	2.7	3574	chr3L	18506092	intergenic	not near genes	chr3L	18507879	intergenic	not near genes	chr3L	18509666	intergenic	not near genes	chr3L_32_18505001	chr3L_18505001	RAL-913
2823	chr3L	18514870	18514917	chr3L	18520111	18520158	BS	8	5240	29.0	25.0	27.0	0.3	5288	chr3L	18514870	intergenic	not near genes	chr3L	18517514	intergenic	not near genes	chr3L	18520158	intergenic	not near genes	chr3L_8_18515001	chr3L_18515001	RAL-913
2824	chr3L	18528592	18528652	chr3L	18537803	18537863	roo	30	9211	7.0	9.0	8.0	3.3	9271	chr3L	18528592	intergenic	not near genes	chr3L	18533228	intergenic	not near genes	chr3L	18537863	intergenic	not near genes	chr3L_30_18530001	chr3L_18530001	RAL-913
2831	chr3L	18593905	18593978	chr3L	18595935	18596011	Doc	21	2031	11.0	8.5	9.8	1.9	2106	chr3L	18593905	intergenic	term -	chr3L	18594958	intergenic	not near genes	chr3L	18596011	intergenic	CR45389 +	chr3L_21_18590001	chr3L_18590001	RAL-913
2836	chr3L	18710715	18710783	chr3L	18718717	18718785	Stalker2	26	8002	9.0	10.0	9.5	2.5	8070	chr3L	18710715	intergenic	not near genes	chr3L	18714750	intergenic	not near genes	chr3L	18718785	intergenic	not near genes	chr3L_26_18710001	chr3L_18710001	RAL-913
2845	chr3L	18772365	18772431	chr3L	18781096	18781162	roo	36	8731	12.5	13.0	12.8	2.6	8797	chr3L	18772365	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781162	intron	ftz-f1 -	chr3L_36_18775001	chr3L_18775001	RAL-913
2850	chr3L	18833744	18833803	chr3L	18834958	18835017	1360	27	1212	7.0	11.5	9.2	2.6	1273	chr3L	18833744	intron	Indy -	chr3L	18834380	intron	Indy -	chr3L	18835017	intron	Indy -	chr3L_27_18830001	chr3L_18830001	RAL-913
2865	chr3L	19008805	19008808	chr3L	19009192	19009193	jockey	4	386	23.0	10.0	16.5	0.2	388	chr3L	19008805	intron	nkd -	chr3L	19008999	intron	nkd -	chr3L	19009193	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-913
2866	chr3L	19008811	19008864	chr3L	19009190	19009214	jockey	9	380	11.5	9.0	10.2	0.8	403	chr3L	19008811	intron	nkd -	chr3L	19009012	intron	nkd -	chr3L	19009214	intron	nkd -	chr3L_9_19005001	chr3L_19005001	RAL-913
2875	chr3L	19115606	19115663	chr3L	19115825	19115891	BS	11	223	12.5	10.5	11.5	0.9	285	chr3L	19115606	intron	CG14082 -	chr3L	19115748	intron	CG14082 -	chr3L	19115891	intron	CG14082 -	chr3L_11_19115001	chr3L_19115001	RAL-913
2876	chr3L	19116998	19117046	chr3L	19124495	19124543	mdg1	21	7495	14.5	9.0	11.8	1.6	7545	chr3L	19116998	intron	CG14082 -	chr3L	19120770	intron	CG14082 -	chr3L	19124543	intron	CG14082 -	chr3L_21_19120001	chr3L_19120001	RAL-913
2877	chr3L	19117050	19117070	chr3L	19124487	19124567	mdg1	8	7485	11.0	7.5	9.2	0.8	7517	chr3L	19117050	intron	CG14082 -	chr3L	19120808	intron	CG14082 -	chr3L	19124567	intron	CG14082 -	chr3L_8_19120001	chr3L_19120001	RAL-913
2886	chr3L	19208012	19208082	chr3L	19209436	19209458	Doc	22	1419	8.5	3.5	6.0	3.1	1446	chr3L	19208012	intron	fz2 -	chr3L	19208735	intron	fz2 -	chr3L	19209458	intron	fz2 -	chr3L_22_19205001	chr3L_19205001	RAL-913
2903	chr3L	19398891	19398928	chr3L	19403658	19403689	F-element	14	4764	6.0	7.5	6.8	1.8	4798	chr3L	19398891	intron	CG32206 -	chr3L	19401290	intron	CG32206 -	chr3L	19403689	intron	CG32206 -	chr3L_14_19400001	chr3L_19400001	RAL-913
2919	chr3L	19820253	19820319	chr3L	19827852	19827918	412	28	7599	5.5	13.0	9.2	2.7	7665	chr3L	19820253	intron	Deaf1 +	chr3L	19824086	intron	Deaf1 +	chr3L	19827918	intron	Deaf1 +	chr3L_28_19820001	chr3L_19820001	RAL-913
2920	chr3L	19848470	19848527	chr3L	19857710	19857768	roo	22	9240	12.0	9.0	10.5	1.9	9298	chr3L	19848470	intron	Papss +	chr3L	19853119	intron	Papss +	chr3L	19857768	intron	Papss +	chr3L_22_19850001	chr3L_19850001	RAL-913
2921	chr3L	19861777	19861850	chr3L	19863615	19863679	S-element	33	1836	6.5	8.5	7.5	3.9	1902	chr3L	19861777	5` UTR	CR45433 +	chr3L	19862728	intergenic	not near genes	chr3L	19863679	intergenic	not near genes	chr3L_33_19860001	chr3L_19860001	RAL-913
2934	chr3L	20113616	20113676	chr3L	20122923	20122983	roo	25	9307	13.0	8.0	10.5	2.2	9367	chr3L	20113616	intergenic	not near genes	chr3L	20118300	intergenic	not near genes	chr3L	20122983	intergenic	not near genes	chr3L_25_20115001	chr3L_20115001	RAL-913
2941	chr3L	20212563	20212581	chr3L	20218190	20218208	mdg3	10	5626	20.0	2.5	11.2	0.8	5645	chr3L	20212563	intergenic	CG7017 -	chr3L	20215386	intergenic	not near genes	chr3L	20218208	intergenic	CG6933 -	chr3L_10_20215001	chr3L_20215001	RAL-913
2943	chr3L	20257284	20257347	chr3L	20258455	20258517	pogo	35	1169	12.0	11.5	11.8	2.7	1233	chr3L	20257284	intron	rdgC +	chr3L	20257900	intron	rdgC +	chr3L	20258517	intron	rdgC +	chr3L_35_20255001	chr3L_20255001	RAL-913
2946	chr3L	20321113	20321113	chr3L	20342868	20342905	17.6	6	21762	10.0	51.5	30.8	0.2	21792	chr3L	20321113	exon	Spn77Bb +	chr3L	20332009	intergenic	not near genes	chr3L	20342905	exon	Spn77Bc +	chr3L_6_20330001	chr3L_20330001	RAL-913
2952	chr3L	20476714	20476770	chr3L	20484363	20484419	springer	37	7649	13.0	12.5	12.8	2.7	7705	chr3L	20476714	3` UTR	isoQC +	chr3L	20480566	intergenic	not near genes	chr3L	20484419	3` UTR	ZnT77C -	chr3L_37_20480001	chr3L_20480001	RAL-913
2953	chr3L	20487620	20487673	chr3L	20488121	20488174	INE-1	14	500	20.0	20.0	20.0	0.7	554	chr3L	20487620	intron	ZnT77C -	chr3L	20487897	intron	ZnT77C -	chr3L	20488174	exon	ZnT77C -	chr3L_14_20485001	chr3L_20485001	RAL-913
2963	chr3L	20590017	20590058	chr3L	20590606	20590627	412	12	583	12.0	6.0	9.0	1.2	610	chr3L	20590017	intergenic	not near genes	chr3L	20590322	intergenic	not near genes	chr3L	20590627	intergenic	not near genes	chr3L_12_20590001	chr3L_20590001	RAL-913
2964	chr3L	20590059	20590088	chr3L	20590603	20590669	412	14	574	7.5	5.5	6.5	1.9	610	chr3L	20590059	intergenic	not near genes	chr3L	20590364	intergenic	not near genes	chr3L	20590669	intergenic	not near genes	chr3L_14_20590001	chr3L_20590001	RAL-913
2969	chr3L	20821234	20821305	chr3L	20824895	20824966	NOF	9	3660	27.0	23.5	25.2	0.3	3732	chr3L	20821234	intron	Pka-R1 +	chr3L	20823100	intron	Pka-R1 +	chr3L	20824966	intron	Pka-R1 +	chr3L_9_20820001	chr3L_20820001	RAL-913
2974	chr3L	21014887	21014946	chr3L	21023398	21023464	Tirant	27	8512	4.5	8.5	6.5	3.6	8577	chr3L	21014887	intron	skd -	chr3L	21019176	intron	skd -	chr3L	21023464	intron	skd -	chr3L_27_21015001	chr3L_21015001	RAL-913
2979	chr3L	21151824	21151882	chr3L	21156958	21157016	flea	28	5134	11.5	10.5	11.0	2.3	5192	chr3L	21151824	intron	Ac78C -	chr3L	21154420	intron	Ac78C -	chr3L	21157016	intron	Ac78C -	chr3L_28_21150001	chr3L_21150001	RAL-913
2982	chr3L	21243727	21243759	chr3L	21251310	21251327	412	8	7580	11.0	10.0	10.5	0.7	7600	chr3L	21243727	intron	Eip78C +	chr3L	21247527	intron	Eip78C +	chr3L	21251327	intron	Eip78C +	chr3L_8_21245001	chr3L_21245001	RAL-913
2984	chr3L	21306103	21306173	chr3L	21315312	21315382	roo	36	9209	10.0	12.5	11.2	3.0	9279	chr3L	21306103	3` UTR	CG7632 +	chr3L	21310742	intron	Pc -	chr3L	21315382	3` UTR	Pc -	chr3L_36_21310001	chr3L_21310001	RAL-913
2987	chr3L	21361681	21361699	chr3L	21362685	21362703	G2	4	1003	37.0	15.5	26.2	0.1	1022	chr3L	21361681	intergenic	CG32440 +	chr3L	21362192	intergenic	not near genes	chr3L	21362703	intergenic	not near genes	chr3L_4_21360001	chr3L_21360001	RAL-913
2988	chr3L	21361705	21361751	chr3L	21362679	21362755	G2	11	1001	29.0	13.5	21.2	0.5	1050	chr3L	21361705	intergenic	CG32440 +	chr3L	21362230	intergenic	not near genes	chr3L	21362755	intergenic	not near genes	chr3L_11_21360001	chr3L_21360001	RAL-913
2990	chr3L	21372679	21372747	chr3L	21379237	21379304	McClintock	29	6558	10.5	13.5	12.0	2.2	6625	chr3L	21372679	intergenic	not near genes	chr3L	21375992	intergenic	not near genes	chr3L	21379304	intergenic	not near genes	chr3L_29_21375001	chr3L_21375001	RAL-913
2998	chr3L	21498832	21498869	chr3L	21500488	21500506	1360	13	1678	3.5	8.0	5.8	1.9	1674	chr3L	21498832	intron	Glg1 -	chr3L	21499669	intron	Glg1 -	chr3L	21500506	intron	Glg1 -	chr3L_13_21495001	chr3L_21495001	RAL-913
3002	chr3L	21749278	21749304	chr3L	21754487	21754502	Doc	8	5206	19.5	9.5	14.5	0.5	5224	chr3L	21749278	intron	Syn1 -	chr3L	21751890	intron	Syn1 -	chr3L	21754502	intron	Syn1 -	chr3L_8_21750001	chr3L_21750001	RAL-913
3003	chr3L	21749306	21749340	chr3L	21754480	21754525	Doc	10	5191	11.0	9.0	10.0	0.9	5219	chr3L	21749306	intron	Syn1 -	chr3L	21751916	intron	Syn1 -	chr3L	21754525	intron	Syn1 -	chr3L_10_21750001	chr3L_21750001	RAL-913
3011	chr3L	21868301	21868378	chr3L	21868675	21868752	INE-1	17	372	22.0	21.5	21.8	0.7	451	chr3L	21868301	intron	mub +	chr3L	21868526	intron	mub +	chr3L	21868752	intron	mub +	chr3L_17_21865001	chr3L_21865001	RAL-913
3020	chr3L	22099632	22099697	chr3L	22105868	22105933	3S18	37	6236	12.0	11.5	11.8	2.9	6301	chr3L	22099632	intergenic	not near genes	chr3L	22102782	intergenic	not near genes	chr3L	22105933	intergenic	not near genes	chr3L_37_22100001	chr3L_22100001	RAL-913
3042	chr3L	22555722	22555798	chr3L	22563242	22563288	blood	21	7515	8.5	3.5	6.0	3.0	7566	chr3L	22555722	intergenic	not near genes	chr3L	22559505	intergenic	not near genes	chr3L	22563288	intergenic	not near genes	chr3L_21_22555001	chr3L_22555001	RAL-913
3044	chr3L	22577580	22577645	chr3L	22582418	22582450	Doc	19	4830	3.5	9.5	6.5	2.5	4870	chr3L	22577580	intergenic	not near genes	chr3L	22580015	intergenic	not near genes	chr3L	22582450	3` UTR	CG14459 -	chr3L_19_22580001	chr3L_22580001	RAL-913
3045	chr3L	22617157	22617210	chr3L	22624654	22624712	blood	23	7502	10.0	9.5	9.8	2.1	7555	chr3L	22617157	intron	CG14459 -	chr3L	22620934	intron	CG14459 -	chr3L	22624712	intron	CG14459 -	chr3L_23_22620001	chr3L_22620001	RAL-913
3049	chr3L	22761348	22761403	chr3L	22766832	22766887	Ivk	17	5482	13.0	12.5	12.8	1.2	5539	chr3L	22761348	intron	SPoCk +	chr3L	22764118	intron	SPoCk +	chr3L	22766887	intron	SPoCk +	chr3L_17_22760001	chr3L_22760001	RAL-913
3051	chr3L	22865940	22865970	chr3L	22867123	22867153	Doc	28	1183	12.0	10.5	11.2	2.3	1213	chr3L	22865940	exon	CG33170 +	chr3L	22866546	intron	CG33170 +	chr3L	22867153	intron	CG33170 +	chr3L_28_22865001	chr3L_22865001	RAL-913
3052	chr3L	22865971	22866003	chr3L	22867114	22867186	Doc	20	1181	8.0	9.0	8.5	2.1	1215	chr3L	22865971	intron	CG33170 +	chr3L	22866578	intron	CG33170 +	chr3L	22867186	intron	CG33170 +	chr3L_20_22865001	chr3L_22865001	RAL-913
3063	chr3L	22955349	22955407	chr3L	22956686	22956750	INE-1	8	1342	29.5	23.5	26.5	0.3	1401	chr3L	22955349	intergenic	CG32461 -	chr3L	22956050	intergenic	not near genes	chr3L	22956750	intergenic	not near genes	chr3L_8_22955001	chr3L_22955001	RAL-913
3066	chr3L	22989829	22989894	chr3L	22996853	22996902	297	24	7023	6.0	12.0	9.0	2.4	7073	chr3L	22989829	intergenic	not near genes	chr3L	22993366	intergenic	not near genes	chr3L	22996902	intergenic	not near genes	chr3L_24_22990001	chr3L_22990001	RAL-913
3070	chr3L	23042183	23042249	chr3L	23048986	23049046	gypsy6	18	6798	18.0	30.5	24.2	0.7	6863	chr3L	23042183	intergenic	not near genes	chr3L	23045614	intergenic	not near genes	chr3L	23049046	intergenic	not near genes	chr3L_18_23045001	chr3L_23045001	RAL-913
3071	chr3L	23165875	23165896	chr3L	23173369	23173390	Quasimodo	9	7494	9.5	7.0	8.2	1.0	7515	chr3L	23165875	intergenic	not near genes	chr3L	23169632	intergenic	not near genes	chr3L	23173390	intergenic	not near genes	chr3L_9_23165001	chr3L_23165001	RAL-913
3075	chr3L	23290449	23290500	chr3L	23295332	23295383	X-element	24	4883	55.5	20.5	38.0	0.6	4934	chr3L	23290449	intergenic	not near genes	chr3L	23292916	intergenic	not near genes	chr3L	23295383	intergenic	not near genes	chr3L_24_23290001	chr3L_23290001	RAL-913
3079	chr3L	23665492	23665517	chr3L	23665632	23665657	gypsy8	9	139	38.5	34.0	36.2	0.2	165	chr3L	23665492	intron	AGO3 +	chr3L	23665574	intron	AGO3 +	chr3L	23665657	intron	AGO3 +	chr3L_9_23665001	chr3L_23665001	RAL-913
3081	chr3L	23848796	23848838	chr3L	23849669	23849712	R1A1-element	5	873	17.0	19.0	18.0	0.3	916	chr3L	23848796	intron	CG40470 -	chr3L	23849254	intron	CG40470 -	chr3L	23849712	intron	CG40470 -	chr3L_5_23845001	chr3L_23845001	RAL-913
3083	chr3L	23866736	23866747	chr3L	23868043	23868054	flea	4	1307	0.0	21.5	10.8	0.3	1318	chr3L	23866736	intron	CG40470 -	chr3L	23867395	intron	CG40470 -	chr3L	23868054	intron	CG40470 -	chr3L_4_23865001	chr3L_23865001	RAL-913
3085	chr3L	23941739	23941755	chr3L	23948097	23948113	Transpac	5	6358	20.5	29.5	25.0	0.2	6374	chr3L	23941739	intron	CG40470 -	chr3L	23944926	intron	CG40470 -	chr3L	23948113	intron	CG40470 -	chr3L_5_23940001	chr3L_23940001	RAL-913
3087	chr3L	24012366	24012403	chr3L	24020757	24020794	roo	18	8390	14.5	13.0	13.8	1.2	8428	chr3L	24012366	intergenic	not near genes	chr3L	24016580	intergenic	not near genes	chr3L	24020794	intergenic	not near genes	chr3L_18_24015001	chr3L_24015001	RAL-913
3088	chr3L	24012405	24012428	chr3L	24020754	24020819	roo	13	8386	8.0	12.5	10.2	1.2	8414	chr3L	24012405	intergenic	not near genes	chr3L	24016612	intergenic	not near genes	chr3L	24020819	intergenic	not near genes	chr3L_13_24015001	chr3L_24015001	RAL-913
3089	chr3L	24021239	24021308	chr3L	24022446	24022476	1360	10	1201	28.0	32.0	30.0	0.3	1237	chr3L	24021239	intergenic	not near genes	chr3L	24021858	intergenic	not near genes	chr3L	24022476	intergenic	not near genes	chr3L_10_24020001	chr3L_24020001	RAL-913
3090	chr3L	24168594	24168618	chr3L	24176397	24176402	ZAM	4	7792	16.5	10.5	13.5	0.3	7808	chr3L	24168594	intron	Snap25 +	chr3L	24172498	intron	Snap25 +	chr3L	24176402	intron	Snap25 +	chr3L_4_24170001	chr3L_24170001	RAL-913
3091	chr3L	24168753	24168819	chr3L	24176124	24176148	ZAM	4	7359	2.5	1.0	1.8	1.4	7395	chr3L	24168753	intron	Snap25 +	chr3L	24172450	intron	Snap25 +	chr3L	24176148	intron	Snap25 +	chr3L_4_24170001	chr3L_24170001	RAL-913
3099	chr3L	24791852	24791862	chr3L	24796681	24796691	Doc	4	4829	16.5	9.0	12.8	0.3	4839	chr3L	24791852	intergenic	not near genes	chr3L	24794272	intergenic	not near genes	chr3L	24796691	intergenic	not near genes	chr3L_4_24790001	chr3L_24790001	RAL-913
3100	chr3L	24791864	24791882	chr3L	24796680	24796711	Doc	11	4828	14.0	9.0	11.5	0.9	4847	chr3L	24791864	intergenic	not near genes	chr3L	24794288	intergenic	not near genes	chr3L	24796711	intergenic	not near genes	chr3L_11_24790001	chr3L_24790001	RAL-913
3109	chr3L	25628473	25628503	chr3L	25633294	25633324	F-element	7	4821	27.5	15.5	21.5	0.3	4851	chr3L	25628473	intron	CG41343 -	chr3L	25630898	intron	CG41343 -	chr3L	25633324	intron	CG41343 -	chr3L_7_25630001	chr3L_25630001	RAL-913
3110	chr3L	25628504	25628510	chr3L	25633276	25633331	F-element	4	4809	25.0	13.0	19.0	0.2	4827	chr3L	25628504	intron	CG41343 -	chr3L	25630918	intron	CG41343 -	chr3L	25633331	intron	CG41343 -	chr3L_4_25630001	chr3L_25630001	RAL-913
3116	chr3L	26704487	26704526	chr3L	26709842	26709880	Transpac	4	5353	8.0	9.0	8.5	0.4	5393	chr3L	26704487	intergenic	not near genes	chr3L	26707184	intergenic	not near genes	chr3L	26709880	intergenic	not near genes	chr3L_4_26705001	chr3L_26705001	RAL-913
3118	chr3L	23941236	23941239	chr3L	26882295	26882298	1360	6	2941059	35.0	10.5	22.8	0.3	2941062	chr3L	23941236	intron	CG40470 -	chr3L	25411767	intergenic	not near genes	chr3L	26882298	intergenic	not near genes	chr3L_6_25410001	chr3L_25410001	RAL-913
3119	chr3L	23941235	23941245	chr3L	26882299	26882300	1360	4	2941059	34.0	9.0	21.5	0.2	2941065	chr3L	23941235	intron	CG40470 -	chr3L	25411768	intergenic	not near genes	chr3L	26882300	intergenic	not near genes	chr3L_4_25410001	chr3L_25410001	RAL-913
3121	chr3L	27356065	27356097	chr3L	27357314	27357346	1360	9	1248	28.5	20.5	24.5	0.4	1281	chr3L	27356065	intron	Dbp80 +	chr3L	27356706	intron	Dbp80 +	chr3L	27357346	intron	Dbp80 +	chr3L_9_27355001	chr3L_27355001	RAL-913
3128	chr3L	27980646	27980700	chr3L	27985494	27985548	Doc	13	4848	29.0	11.0	20.0	0.6	4902	chr3L	27980646	intron	CG17514 -	chr3L	27983097	intron	CG17514 -	chr3L	27985548	intron	CG17514 -	chr3L_13_27980001	chr3L_27980001	RAL-913
3138	chr3R	4104997	4105058	chr3R	4110251	4110312	copia	16	5254	13.0	12.0	12.5	1.2	5315	chr3R	4104997	intergenic	not near genes	chr3R	4107654	intergenic	not near genes	chr3R	4110312	intergenic	not near genes	chr3R_16_4105001	chr3R_4105001	RAL-913
3141	chr3R	4206025	4206096	chr3R	4211650	4211721	mdg3	34	5625	7.5	7.5	7.5	4.0	5696	chr3R	4206025	intron	CG14636 -	chr3R	4208873	intron	CG14636 -	chr3R	4211721	intron	CG14636 -	chr3R_34_4205001	chr3R_4205001	RAL-913
3143	chr3R	4366712	4366782	chr3R	4375145	4375215	roo	27	8431	8.5	13.5	11.0	2.2	8503	chr3R	4366712	3` UTR	CG1090 +	chr3R	4370964	intergenic	not near genes	chr3R	4375215	5` UTR	CR44922 +	chr3R_27_4370001	chr3R_4370001	RAL-913
3145	chr3R	4408375	4408425	chr3R	4412729	4412779	Juan	22	4351	12.5	17.0	14.8	1.4	4404	chr3R	4408375	intron	CG32944 -	chr3R	4410577	intron	CG32944 -	chr3R	4412779	intron	CG32944 -	chr3R_22_4410001	chr3R_4410001	RAL-913
3148	chr3R	4609508	4609573	chr3R	4610722	4610787	1360	31	1212	8.0	15.0	11.5	2.5	1279	chr3R	4609508	intergenic	not near genes	chr3R	4610148	intergenic	not near genes	chr3R	4610787	intergenic	not near genes	chr3R_31_4610001	chr3R_4610001	RAL-913
3151	chr3R	4683137	4683193	chr3R	4684946	4685002	S-element	4	1809	25.5	17.5	21.5	0.2	1865	chr3R	4683137	intron	CG43427 +	chr3R	4684070	intron	CG43427 +	chr3R	4685002	intron	CG43427 +	chr3R_4_4680001	chr3R_4680001	RAL-913
3156	chr3R	4753199	4753262	chr3R	4757552	4757615	F-element	14	4349	32.5	11.0	21.8	0.6	4416	chr3R	4753199	intron,intron	atms +,CG44098 -	chr3R	4755407	intron,intron	atms +,CG44098 -	chr3R	4757615	intron,exon	atms +,CG44098 -	chr3R_14_4755001	chr3R_4755001	RAL-913
3157	chr3R	4759679	4759740	chr3R	4761226	4761287	hopper2	10	1545	21.0	21.5	21.2	0.5	1608	chr3R	4759679	intron,intron	atms +,CG44098 -	chr3R	4760483	intron,intron	atms +,CG44098 -	chr3R	4761287	intron,intron	atms +,CG44098 -	chr3R_10_4760001	chr3R_4760001	RAL-913
3161	chr3R	4887438	4887501	chr3R	4894857	4894921	rover	17	7425	6.5	9.5	8.0	1.9	7483	chr3R	4887438	intergenic	not near genes	chr3R	4891180	intergenic	not near genes	chr3R	4894921	intergenic	not near genes	chr3R_17_4890001	chr3R_4890001	RAL-913
3168	chr3R	5045800	5045873	chr3R	5052952	5053025	HMS-Beagle	34	7151	8.0	10.0	9.0	3.4	7225	chr3R	5045800	3` UTR	CR43635 -	chr3R	5049412	intergenic	not near genes	chr3R	5053025	intergenic	CR45588 -	chr3R_34_5045001	chr3R_5045001	RAL-913
3170	chr3R	5067940	5068006	chr3R	5073507	5073573	mdg3	36	5566	9.5	12.5	11.0	3.0	5633	chr3R	5067940	intergenic	not near genes	chr3R	5070756	intergenic	not near genes	chr3R	5073573	intergenic	not near genes	chr3R_36_5070001	chr3R_5070001	RAL-913
3182	chr3R	5338373	5338383	chr3R	5343600	5343610	Rt1c	8	5227	18.5	9.5	14.0	0.5	5237	chr3R	5338373	intron	mtd -	chr3R	5340992	intron	mtd -	chr3R	5343610	intron	mtd -	chr3R_8_5340001	chr3R_5340001	RAL-913
3183	chr3R	5445918	5445985	chr3R	5452428	5452495	Burdock	31	6510	9.5	8.5	9.0	3.1	6577	chr3R	5445918	intron	CG14669 +	chr3R	5449206	intron	CG14669 +	chr3R	5452495	intron	CG14669 +	chr3R_31_5445001	chr3R_5445001	RAL-913
3191	chr3R	5745974	5745980	chr3R	5746263	5746271	pogo	8	290	17.5	14.0	15.8	0.5	297	chr3R	5745974	3` UTR	Madm +	chr3R	5746122	3` UTR	Madm +	chr3R	5746271	3` UTR	Madm +	chr3R_8_5745001	chr3R_5745001	RAL-913
3192	chr3R	5745984	5746036	chr3R	5746259	5746327	pogo	25	288	8.0	13.0	10.5	2.2	343	chr3R	5745984	3` UTR	Madm +	chr3R	5746156	3` UTR	Madm +	chr3R	5746327	3` UTR	Madm +	chr3R_25_5745001	chr3R_5745001	RAL-913
3193	chr3R	5746974	5747027	chr3R	5753215	5753268	diver	24	6241	13.0	12.0	12.5	1.8	6294	chr3R	5746974	intergenic	Madm +	chr3R	5750121	intergenic	not near genes	chr3R	5753268	intergenic	CG2091 -	chr3R_24_5750001	chr3R_5750001	RAL-913
3196	chr3R	5809073	5809138	chr3R	5809364	5809429	pogo	37	290	9.5	10.0	9.8	3.4	356	chr3R	5809073	3` UTR	CG11000 +	chr3R	5809251	3` UTR	CG11000 +	chr3R	5809429	3` UTR	CG11000 +	chr3R_37_5805001	chr3R_5805001	RAL-913
3197	chr3R	5822344	5822400	chr3R	5823561	5823572	1360	32	1215	11.5	12.0	11.8	2.5	1228	chr3R	5822344	3` UTR	CG2023 -	chr3R	5822958	3` UTR	CG2023 -	chr3R	5823572	3` UTR	CG2023 -	chr3R_32_5820001	chr3R_5820001	RAL-913
3203	chr3R	5927523	5927579	chr3R	5927813	5927869	pogo	31	290	10.5	14.0	12.2	2.3	346	chr3R	5927523	intron	CG34113 -	chr3R	5927696	intron	CG34113 -	chr3R	5927869	intron	CG34113 -	chr3R_31_5925001	chr3R_5925001	RAL-913
3208	chr3R	6015946	6015989	chr3R	6024446	6024519	Tirant	22	8518	5.5	9.0	7.2	2.7	8573	chr3R	6015946	intergenic	not near genes	chr3R	6020232	intergenic	not near genes	chr3R	6024519	intergenic	not near genes	chr3R_22_6020001	chr3R_6020001	RAL-913
3218	chr3R	6121135	6121178	chr3R	6121370	6121446	BS	13	243	18.5	9.0	13.8	0.9	311	chr3R	6121135	intergenic	not near genes	chr3R	6121290	intergenic	not near genes	chr3R	6121446	intergenic	not near genes	chr3R_13_6120001	chr3R_6120001	RAL-913
3220	chr3R	6158466	6158536	chr3R	6167099	6167163	Tirant	20	8626	8.0	8.0	8.0	2.2	8697	chr3R	6158466	intergenic	not near genes	chr3R	6162814	intergenic	not near genes	chr3R	6167163	intergenic	CG1077 +	chr3R_20_6160001	chr3R_6160001	RAL-913
3221	chr3R	6175127	6175193	chr3R	6182449	6182515	HMS-Beagle2	26	7321	11.5	10.0	10.8	2.2	7388	chr3R	6175127	intergenic	Osi1 +	chr3R	6178821	intron	CR45194 +	chr3R	6182515	intergenic	CR45194 +	chr3R_26_6175001	chr3R_6175001	RAL-913
3224	chr3R	6206248	6206291	chr3R	6206515	6206558	BS	10	262	20.5	17.5	19.0	0.5	310	chr3R	6206248	exon	Osi24 +	chr3R	6206403	intron	Osi24 +	chr3R	6206558	intron	Osi24 +	chr3R_10_6205001	chr3R_6205001	RAL-913
3232	chr3R	6509980	6510045	chr3R	6515111	6515176	jockey	36	5131	7.0	11.5	9.2	3.5	5196	chr3R	6509980	intergenic	not near genes	chr3R	6512578	intergenic	not near genes	chr3R	6515176	intergenic	not near genes	chr3R_36_6510001	chr3R_6510001	RAL-913
3244	chr3R	6737455	6737520	chr3R	6739292	6739357	Doc	23	1831	6.0	13.5	9.8	2.1	1902	chr3R	6737455	intron	pb -	chr3R	6738406	intron	pb -	chr3R	6739357	intron	pb -	chr3R_23_6735001	chr3R_6735001	RAL-913
3274	chr3R	7349642	7349684	chr3R	7355703	7355745	micropia	11	6061	12.0	27.0	19.5	0.5	6103	chr3R	7349642	intergenic	CG43290 -	chr3R	7352694	intergenic	not near genes	chr3R	7355745	intergenic	not near genes	chr3R_11_7350001	chr3R_7350001	RAL-913
3294	chr3R	7694536	7694607	chr3R	7713647	7713718	invader3	29	19111	9.0	10.5	9.8	2.7	19182	chr3R	7694536	3` UTR	Nlg1 +	chr3R	7704127	intergenic	not near genes	chr3R	7713718	intergenic	not near genes	chr3R_29_7700001	chr3R_7700001	RAL-913
3297	chr3R	7729423	7729498	chr3R	7737411	7737485	Stalker2	25	7988	11.0	8.0	9.5	2.4	8062	chr3R	7729423	intergenic	not near genes	chr3R	7733454	intergenic	not near genes	chr3R	7737485	intergenic	not near genes	chr3R_25_7730001	chr3R_7730001	RAL-913
3304	chr3R	7849606	7849665	chr3R	7850821	7850882	1360	23	1216	7.5	10.0	8.8	2.3	1276	chr3R	7849606	intron	CG34384 +	chr3R	7850244	intron	CG34384 +	chr3R	7850882	intron	CG34384 +	chr3R_23_7850001	chr3R_7850001	RAL-913
3307	chr3R	7973282	7973333	chr3R	7974394	7974445	1360	33	1112	16.5	13.0	14.8	2.1	1163	chr3R	7973282	intergenic	not near genes	chr3R	7973864	intergenic	not near genes	chr3R	7974445	3` UTR	CD98hc -	chr3R_33_7970001	chr3R_7970001	RAL-913
3312	chr3R	8090515	8090552	chr3R	8094042	8094078	297	5	3522	5.0	14.0	9.5	0.5	3563	chr3R	8090515	intergenic	CR44330 +	chr3R	8092296	intergenic	not near genes	chr3R	8094078	intergenic	CG7900 +	chr3R_5_8090001	chr3R_8090001	RAL-913
3313	chr3R	8094371	8094387	chr3R	8099726	8099742	Transpac	8	5355	17.5	14.5	16.0	0.5	5371	chr3R	8094371	intron	CG7900 +	chr3R	8097056	intron	CG7900 +	chr3R	8099742	intron	CG7900 +	chr3R_8_8095001	chr3R_8095001	RAL-913
3314	chr3R	8094388	8094426	chr3R	8099722	8099781	Transpac	19	5354	6.5	13.5	10.0	1.7	5393	chr3R	8094388	intron	CG7900 +	chr3R	8097084	intron	CG7900 +	chr3R	8099781	intron	CG7900 +	chr3R_19_8095001	chr3R_8095001	RAL-913
3315	chr3R	8101713	8101734	chr3R	8104847	8104868	G2	9	3134	16.0	13.0	14.5	0.6	3155	chr3R	8101713	exon	CG7900 +	chr3R	8103290	intron	CG7900 +	chr3R	8104868	3` UTR	CG7900 +	chr3R_9_8100001	chr3R_8100001	RAL-913
3316	chr3R	8101737	8101783	chr3R	8104846	8104916	G2	16	3130	9.5	12.0	10.8	1.4	3179	chr3R	8101737	exon	CG7900 +	chr3R	8103326	intron	CG7900 +	chr3R	8104916	3` UTR	CG7900 +	chr3R_16_8100001	chr3R_8100001	RAL-913
3320	chr3R	8207508	8207584	chr3R	8208403	8208445	F-element	34	887	6.5	9.0	7.8	3.9	937	chr3R	8207508	intergenic	not near genes	chr3R	8207976	intergenic	not near genes	chr3R	8208445	intergenic	not near genes	chr3R_34_8205001	chr3R_8205001	RAL-913
3329	chr3R	8402967	8402973	chr3R	8412183	8412189	roo	4	9216	17.0	7.0	12.0	0.3	9222	chr3R	8402967	intron	CG45263 -	chr3R	8407578	intron	CG45263 -	chr3R	8412189	intron	CG45263 -	chr3R_4_8405001	chr3R_8405001	RAL-913
3330	chr3R	8402974	8403027	chr3R	8412181	8412243	roo	16	9215	7.5	7.0	7.2	2.0	9269	chr3R	8402974	intron	CG45263 -	chr3R	8407608	intron	CG45263 -	chr3R	8412243	intron	CG45263 -	chr3R_16_8405001	chr3R_8405001	RAL-913
3334	chr3R	8470114	8470128	chr3R	8470222	8470255	roo	5	123	25.5	20.0	22.8	0.2	141	chr3R	8470114	intron	CG45263 -	chr3R	8470184	intron	CG45263 -	chr3R	8470255	intron	CG45263 -	chr3R_5_8470001	chr3R_8470001	RAL-913
3336	chr3R	8570448	8570507	chr3R	8575134	8575192	HMS-Beagle	11	4683	5.0	11.5	8.2	1.2	4744	chr3R	8570448	intergenic	not near genes	chr3R	8572820	intergenic	not near genes	chr3R	8575192	intergenic	not near genes	chr3R_11_8570001	chr3R_8570001	RAL-913
3339	chr3R	8601728	8601795	chr3R	8610931	8610998	roo	29	9202	9.0	8.0	8.5	3.1	9270	chr3R	8601728	intron	5-HT2B +	chr3R	8606363	intron	5-HT2B +	chr3R	8610998	intron	5-HT2B +	chr3R_29_8605001	chr3R_8605001	RAL-913
3342	chr3R	8707311	8707380	chr3R	8709803	8709871	jockey	17	2491	9.5	7.0	8.2	1.8	2560	chr3R	8707311	intergenic	not near genes	chr3R	8708591	intergenic	not near genes	chr3R	8709871	intergenic	not near genes	chr3R_17_8705001	chr3R_8705001	RAL-913
3351	chr3R	8894828	8894893	chr3R	8896034	8896099	1360	29	1204	9.0	8.0	8.5	3.1	1271	chr3R	8894828	intron	pyd -	chr3R	8895464	intron	pyd -	chr3R	8896099	intron	pyd -	chr3R_29_8895001	chr3R_8895001	RAL-913
3352	chr3R	8898179	8898209	chr3R	8913803	8913831	297	8	15624	19.0	7.5	13.2	0.6	15652	chr3R	8898179	intron	pyd -	chr3R	8906005	intron	pyd -	chr3R	8913831	intron	pyd -	chr3R_8_8905001	chr3R_8905001	RAL-913
3373	chr3R	9278745	9278802	chr3R	9284055	9284112	Rt1a	25	5310	4.5	8.0	6.2	3.5	5367	chr3R	9278745	intergenic	not near genes	chr3R	9281428	intergenic	not near genes	chr3R	9284112	intergenic	not near genes	chr3R_25_9280001	chr3R_9280001	RAL-913
3375	chr3R	9319534	9319594	chr3R	9320019	9320079	jockey	33	483	12.5	10.0	11.2	2.7	545	chr3R	9319534	intron	CG8861 -	chr3R	9319806	intron	CG8861 -	chr3R	9320079	intron	CG8861 -	chr3R_33_9315001	chr3R_9315001	RAL-913
3376	chr3R	9361810	9361837	chr3R	9362099	9362128	pogo	10	291	12.5	18.0	15.2	0.6	318	chr3R	9361810	3` UTR	CG45050 +	chr3R	9361969	3` UTR	CG45050 +	chr3R	9362128	3` UTR	CG45050 +	chr3R_10_9360001	chr3R_9360001	RAL-913
3387	chr3R	9699929	9699999	chr3R	9700068	9700135	1360	6	138	22.5	27.0	24.8	0.2	206	chr3R	9699929	intron	Unc-115a -	chr3R	9700032	intron	Unc-115a -	chr3R	9700135	intron	Unc-115a -	chr3R_6_9700001	chr3R_9700001	RAL-913
3398	chr3R	10196907	10196927	chr3R	10202944	10202964	297	7	6034	15.0	10.0	12.5	0.5	6057	chr3R	10196907	exon	Syn +	chr3R	10199936	intron	Syn +	chr3R	10202964	intron	Syn +	chr3R_7_10195001	chr3R_10195001	RAL-913
3400	chr3R	10231739	10231806	chr3R	10237366	10237433	mdg3	42	5627	13.0	9.0	11.0	3.5	5694	chr3R	10231739	intron	CG42795 +	chr3R	10234586	intron	CG42795 +	chr3R	10237433	intron	CG42795 +	chr3R_42_10230001	chr3R_10230001	RAL-913
3401	chr3R	10255340	10255386	chr3R	10260830	10260859	I-element	19	5486	13.0	14.0	13.5	1.3	5519	chr3R	10255340	intergenic	Sirt6 -,CG3999 +	chr3R	10258100	intron	Sirt6 -	chr3R	10260859	exon	Sirt6 -	chr3R_19_10255001	chr3R_10255001	RAL-913
3426	chr3R	10804139	10804193	chr3R	10811721	10811775	17.6	8	7582	18.0	20.5	19.2	0.4	7636	chr3R	10804139	intergenic	CG14692 -	chr3R	10807957	intergenic	not near genes	chr3R	10811775	3` UTR	CG14693 -	chr3R_8_10805001	chr3R_10805001	RAL-913
3437	chr3R	10957817	10957884	chr3R	10963256	10963259	Rt1c	19	5425	6.0	4.5	5.2	3.1	5442	chr3R	10957817	intergenic	not near genes	chr3R	10960538	intergenic	not near genes	chr3R	10963259	intergenic	not near genes	chr3R_19_10960001	chr3R_10960001	RAL-913
3448	chr3R	11065541	11065609	chr3R	11071243	11071311	297	7	5702	5.0	4.0	4.5	1.3	5770	chr3R	11065541	intergenic	not near genes	chr3R	11068426	intergenic	not near genes	chr3R	11071311	intergenic	not near genes	chr3R_7_11065001	chr3R_11065001	RAL-913
3463	chr3R	11247195	11247228	chr3R	11247326	11247359	INE-1	16	131	17.0	5.0	11.0	1.3	164	chr3R	11247195	intergenic	CG5214 +,CR43283 -	chr3R	11247277	intergenic	CR43283 -,CG5214 +	chr3R	11247359	intergenic	CR43283 -,CG5214 +	chr3R_16_11245001	chr3R_11245001	RAL-913
3474	chr3R	11379193	11379269	chr3R	11388398	11388433	roo	19	9203	7.0	10.5	8.8	1.9	9240	chr3R	11379193	intron	pros +	chr3R	11383813	intron	pros +	chr3R	11388433	intron	pros +	chr3R_19_11380001	chr3R_11380001	RAL-913
3499	chr3R	11841022	11841091	chr3R	11846262	11846302	BS	16	5238	6.5	13.0	9.8	1.5	5280	chr3R	11841022	intron	CG6959 -	chr3R	11843662	intron	CG6959 -	chr3R	11846302	intron	CG6959 -	chr3R_16_11840001	chr3R_11840001	RAL-913
3510	chr3R	11957806	11957881	chr3R	11958139	11958214	S-element	22	332	8.5	2.5	5.5	3.4	408	chr3R	11957806	intergenic	not near genes	chr3R	11958010	intergenic	not near genes	chr3R	11958214	intergenic	not near genes	chr3R_22_11955001	chr3R_11955001	RAL-913
3513	chr3R	12022837	12022908	chr3R	12025064	12025135	pogo	31	2226	9.5	8.0	8.8	3.2	2298	chr3R	12022837	intergenic	not near genes	chr3R	12023986	intergenic	not near genes	chr3R	12025135	intergenic	not near genes	chr3R_31_12020001	chr3R_12020001	RAL-913
3562	chr3R	12864526	12864578	chr3R	12865061	12865113	roo	8	535	7.5	7.5	7.5	0.9	587	chr3R	12864526	intergenic	not near genes	chr3R	12864820	intergenic	not near genes	chr3R	12865113	intergenic	not near genes	chr3R_8_12860001	chr3R_12860001	RAL-913
3569	chr3R	12920112	12920144	chr3R	12925365	12925397	copia	10	5251	11.5	11.5	11.5	0.8	5285	chr3R	12920112	intron	beat-Vb +	chr3R	12922754	intron	beat-Vb +	chr3R	12925397	intron	beat-Vb +	chr3R_10_12920001	chr3R_12920001	RAL-913
3570	chr3R	12920147	12920175	chr3R	12925357	12925401	copia	10	5241	6.5	11.0	8.8	1.0	5254	chr3R	12920147	intron	beat-Vb +	chr3R	12922774	intron	beat-Vb +	chr3R	12925401	intron	beat-Vb +	chr3R_10_12920001	chr3R_12920001	RAL-913
3586	chr3R	13135786	13135854	chr3R	13138001	13138079	pogo	30	2220	4.0	8.0	6.0	4.3	2293	chr3R	13135786	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136932	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138079	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_30_13135001	chr3R_13135001	RAL-913
3589	chr3R	13142990	13143062	chr3R	13148616	13148678	mdg3	31	5623	4.5	7.0	5.8	4.6	5688	chr3R	13142990	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145834	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148678	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_31_13145001	chr3R_13145001	RAL-913
3602	chr3R	13314058	13314122	chr3R	13318896	13318960	Doc	23	4837	11.0	5.5	8.2	2.5	4902	chr3R	13314058	intergenic	not near genes	chr3R	13316509	intergenic	not near genes	chr3R	13318960	intergenic	CG45080 -	chr3R_23_13315001	chr3R_13315001	RAL-913
3612	chr3R	13517180	13517259	chr3R	13520046	13520120	jockey	19	2866	5.5	0.0	2.8	5.0	2940	chr3R	13517180	intergenic	not near genes	chr3R	13518650	intergenic	not near genes	chr3R	13520120	intergenic	not near genes	chr3R_19_13515001	chr3R_13515001	RAL-913
3651	chr3R	14021589	14021661	chr3R	14023464	14023536	S-element	22	1875	11.0	9.5	10.2	2.0	1947	chr3R	14021589	intron	rdx -	chr3R	14022562	intron	rdx -	chr3R	14023536	intron	rdx -	chr3R_22_14020001	chr3R_14020001	RAL-913
3668	chr3R	14180767	14180841	chr3R	14185582	14185656	F-element	15	4815	4.5	10.5	7.5	1.8	4889	chr3R	14180767	intron	Dop1R1 -	chr3R	14183212	intron	Dop1R1 -	chr3R	14185656	intron	Dop1R1 -	chr3R_15_14180001	chr3R_14180001	RAL-913
3669	chr3R	14194412	14194459	chr3R	14203596	14203640	roo	5	9181	11.5	3.0	7.2	0.6	9228	chr3R	14194412	intron	Dop1R1 -	chr3R	14199026	intron	Dop1R1 -	chr3R	14203640	intron	Dop1R1 -	chr3R_5_14195001	chr3R_14195001	RAL-913
3670	chr3R	14236896	14236923	chr3R	14244440	14244471	Idefix	4	7545	24.0	8.5	16.2	0.2	7575	chr3R	14236896	exon	CG43291 -	chr3R	14240684	intron	CG43291 -	chr3R	14244471	intron	CG43291 -	chr3R_4_14240001	chr3R_14240001	RAL-913
3671	chr3R	14246318	14246415	chr3R	14247886	14247961	jockey	39	1547	8.5	9.0	8.8	4.0	1643	chr3R	14246318	intergenic	not near genes	chr3R	14247140	intergenic	not near genes	chr3R	14247961	intergenic	not near genes	chr3R_39_14245001	chr3R_14245001	RAL-913
3682	chr3R	14504982	14504993	chr3R	14505108	14505113	roo	4	123	22.5	27.0	24.8	0.2	131	chr3R	14504982	intron	CR44177 +	chr3R	14505048	intron	CR44177 +	chr3R	14505113	intron	CR44177 +	chr3R_4_14505001	chr3R_14505001	RAL-913
3712	chr3R	15041350	15041419	chr3R	15045184	15045253	Doc	15	3831	5.0	5.5	5.2	2.4	3903	chr3R	15041350	intergenic	not near genes	chr3R	15043302	intergenic	not near genes	chr3R	15045253	intergenic	not near genes	chr3R_15_15040001	chr3R_15040001	RAL-913
3713	chr3R	15041443	15041456	chr3R	15045260	15045273	Doc	5	3817	2.0	20.0	11.0	0.4	3830	chr3R	15041443	intergenic	not near genes	chr3R	15043358	intergenic	not near genes	chr3R	15045273	intergenic	not near genes	chr3R_5_15040001	chr3R_15040001	RAL-913
3715	chr3R	15059240	15059277	chr3R	15059501	15059536	BS	5	257	17.5	16.5	17.0	0.3	296	chr3R	15059240	intron	dpr9 -	chr3R	15059388	intron	dpr9 -	chr3R	15059536	intron	dpr9 -	chr3R_5_15055001	chr3R_15055001	RAL-913
3717	chr3R	15079764	15079777	chr3R	15080055	15080068	pogo	8	291	24.0	4.0	14.0	0.5	304	chr3R	15079764	3` UTR	CG6966 -	chr3R	15079916	3` UTR	CG6966 -	chr3R	15080068	3` UTR	CG6966 -	chr3R_8_15075001	chr3R_15075001	RAL-913
3718	chr3R	15079784	15079837	chr3R	15080054	15080121	pogo	18	286	11.0	4.0	7.5	2.1	337	chr3R	15079784	3` UTR	CG6966 -	chr3R	15079952	3` UTR	CG6966 -	chr3R	15080121	3` UTR	CG6966 -	chr3R_18_15075001	chr3R_15075001	RAL-913
3720	chr3R	15102445	15102515	chr3R	15109754	15109820	412	22	7307	19.0	8.0	13.5	1.5	7375	chr3R	15102445	intron	CG42788 -	chr3R	15106132	intron	CG42788 -	chr3R	15109820	intron	CG42788 -	chr3R_22_15105001	chr3R_15105001	RAL-913
3723	chr3R	15132020	15132078	chr3R	15135130	15135188	Juan	25	3108	8.5	16.5	12.5	1.9	3168	chr3R	15132020	intergenic	CG42788 -	chr3R	15133604	intergenic	not near genes	chr3R	15135188	exon	CG6912 -	chr3R_25_15130001	chr3R_15130001	RAL-913
3726	chr3R	15162509	15162562	chr3R	15167326	15167380	F-element	22	4817	12.5	11.0	11.8	1.7	4871	chr3R	15162509	intron	Gyc88E +	chr3R	15164944	intron	Gyc88E +	chr3R	15167380	intron	Gyc88E +	chr3R_22_15160001	chr3R_15160001	RAL-913
3742	chr3R	15601127	15601176	chr3R	15608699	15608747	412	19	7569	15.0	13.0	14.0	1.3	7620	chr3R	15601127	intergenic	not near genes	chr3R	15604937	intergenic	not near genes	chr3R	15608747	intergenic	not near genes	chr3R_19_15600001	chr3R_15600001	RAL-913
3743	chr3R	15601177	15601192	chr3R	15608695	15608764	412	7	7564	10.5	11.5	11.0	0.6	7587	chr3R	15601177	intergenic	not near genes	chr3R	15604970	intergenic	not near genes	chr3R	15608764	intergenic	not near genes	chr3R_7_15600001	chr3R_15600001	RAL-913
3744	chr3R	15618705	15618759	chr3R	15626229	15626283	blood	18	7523	6.0	16.5	11.2	1.5	7578	chr3R	15618705	intergenic	not near genes	chr3R	15622494	intergenic	not near genes	chr3R	15626283	intergenic	not near genes	chr3R_18_15620001	chr3R_15620001	RAL-913
3756	chr3R	15735194	15735234	chr3R	15739964	15740004	F-element	11	4769	7.0	7.5	7.2	1.3	4810	chr3R	15735194	intergenic	not near genes	chr3R	15737599	intergenic	not near genes	chr3R	15740004	intergenic	not near genes	chr3R_11_15735001	chr3R_15735001	RAL-913
3775	chr3R	16189369	16189441	chr3R	16189822	16189894	invader4	21	452	8.5	8.5	8.5	2.2	525	chr3R	16189369	intron	sra +	chr3R	16189632	intron	sra +	chr3R	16189894	intron	sra +	chr3R_21_16185001	chr3R_16185001	RAL-913
3801	chr3R	16756283	16756295	chr3R	16762514	16762536	diver	7	6240	12.5	8.5	10.5	0.6	6253	chr3R	16756283	intron	bxd -	chr3R	16759410	intron	bxd -	chr3R	16762536	intron	bxd -	chr3R_7_16755001	chr3R_16755001	RAL-913
3802	chr3R	16756299	16756344	chr3R	16762513	16762565	diver	11	6233	7.0	8.5	7.8	1.2	6266	chr3R	16756299	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762565	intron	bxd -	chr3R_11_16755001	chr3R_16755001	RAL-913
3825	chr3R	17294635	17294705	chr3R	17295096	17295188	BS	27	475	6.0	4.5	5.2	4.4	553	chr3R	17294635	intergenic	not near genes	chr3R	17294912	intergenic	not near genes	chr3R	17295188	intergenic	not near genes	chr3R_27_17290001	chr3R_17290001	RAL-913
3829	chr3R	17346656	17346708	chr3R	17348269	17348321	F-element	26	1613	7.0	9.0	8.0	2.9	1665	chr3R	17346656	intron	beat-IIa -	chr3R	17347488	intron	beat-IIa -	chr3R	17348321	intron	beat-IIa -	chr3R_26_17345001	chr3R_17345001	RAL-913
3835	chr3R	17509214	17509249	chr3R	17516805	17516838	412	9	7589	6.0	17.0	11.5	0.7	7624	chr3R	17509214	intergenic	not near genes	chr3R	17513026	intergenic	not near genes	chr3R	17516838	intergenic	not near genes	chr3R_9_17510001	chr3R_17510001	RAL-913
3837	chr3R	17591251	17591262	chr3R	17591737	17591747	F-element	5	486	16.5	15.0	15.8	0.3	496	chr3R	17591251	intergenic	not near genes	chr3R	17591499	intergenic	not near genes	chr3R	17591747	intergenic	not near genes	chr3R_5_17590001	chr3R_17590001	RAL-913
3838	chr3R	17591269	17591303	chr3R	17591728	17591752	F-element	13	476	11.5	11.5	11.5	1.0	483	chr3R	17591269	intergenic	not near genes	chr3R	17591510	intergenic	not near genes	chr3R	17591752	intergenic	not near genes	chr3R_13_17590001	chr3R_17590001	RAL-913
3842	chr3R	17638273	17638340	chr3R	17638805	17638875	roo	12	535	0.0	10.5	5.2	1.9	602	chr3R	17638273	intron	CG43175 +	chr3R	17638574	intron	CG43175 +	chr3R	17638875	intron,intron	CG43175 +,CR45222 +	chr3R_12_17635001	chr3R_17635001	RAL-913
3870	chr3R	17925818	17925870	chr3R	17927328	17927362	hobo	11	1512	9.0	10.0	9.5	1.0	1544	chr3R	17925818	intron	cpo +	chr3R	17926590	intron	cpo +	chr3R	17927362	intron	cpo +	chr3R_11_17925001	chr3R_17925001	RAL-913
3875	chr3R	18032738	18032744	chr3R	18040456	18040462	opus	5	7718	23.0	0.0	11.5	0.4	7724	chr3R	18032738	intergenic	not near genes	chr3R	18036600	intergenic	not near genes	chr3R	18040462	intergenic	not near genes	chr3R_5_18035001	chr3R_18035001	RAL-913
3876	chr3R	18032747	18032805	chr3R	18040454	18040534	opus	18	7718	10.0	0.0	5.0	3.0	7787	chr3R	18032747	intergenic	not near genes	chr3R	18036640	intergenic	not near genes	chr3R	18040534	intergenic	not near genes	chr3R_18_18035001	chr3R_18035001	RAL-913
3879	chr3R	18061546	18061602	chr3R	18063164	18063220	F-element	20	1619	5.5	5.5	5.5	3.1	1674	chr3R	18061546	intergenic	not near genes	chr3R	18062383	intergenic	not near genes	chr3R	18063220	intergenic	not near genes	chr3R_20_18060001	chr3R_18060001	RAL-913
3897	chr3R	18331801	18331817	chr3R	18333356	18333372	hopper2	9	1555	8.5	4.5	6.5	1.2	1571	chr3R	18331801	3` UTR	CG15803 -	chr3R	18332586	intron	CG15803 -	chr3R	18333372	3` UTR	CG15803 -	chr3R_9_18330001	chr3R_18330001	RAL-913
3913	chr3R	18606470	18606533	chr3R	18610739	18610805	F-element	23	4274	8.0	7.0	7.5	2.7	4335	chr3R	18606470	intron,intron	qin +,CG14304 -	chr3R	18608638	intron,intron	qin +,CG14304 -	chr3R	18610805	intron,intron	qin +,CG14304 -	chr3R_23_18605001	chr3R_18605001	RAL-913
3953	chr3R	19136406	19136471	chr3R	19139742	19139807	Bari1	18	3337	60.5	66.5	63.5	0.3	3401	chr3R	19136406	exon	Cyp12a4 +	chr3R	19138106	intergenic	not near genes	chr3R	19139807	3` UTR	Ppcs -	chr3R_18_19135001	chr3R_19135001	RAL-913
3958	chr3R	19192915	19192954	chr3R	19197291	19197304	F-element	5	4370	5.5	6.0	5.8	0.7	4389	chr3R	19192915	intron	CG31475 +	chr3R	19195110	intron	CG31475 +	chr3R	19197304	intron	CG31475 +	chr3R_5_19195001	chr3R_19195001	RAL-913
3959	chr3R	19193002	19193004	chr3R	19197280	19197313	F-element	7	4313	0.0	4.0	2.0	2.3	4311	chr3R	19193002	intron	CG31475 +	chr3R	19195158	intron	CG31475 +	chr3R	19197313	intron	CG31475 +	chr3R_7_19195001	chr3R_19195001	RAL-913
3998	chr3R	19744198	19744213	chr3R	19749488	19749509	Rt1a	7	5294	15.5	11.0	13.2	0.5	5311	chr3R	19744198	intron,intron	GluClalpha +,CR43488 -	chr3R	19746854	intron	GluClalpha +	chr3R	19749509	intron	GluClalpha +	chr3R_7_19745001	chr3R_19745001	RAL-913
4020	chr3R	20109488	20109560	chr3R	20114742	20114816	copia	25	5255	7.0	6.0	6.5	3.3	5328	chr3R	20109488	intergenic	not near genes	chr3R	20112152	intergenic	not near genes	chr3R	20114816	intergenic	CG10887 +	chr3R_25_20110001	chr3R_20110001	RAL-913
4024	chr3R	20156654	20156714	chr3R	20165874	20165934	roo	23	9219	8.0	13.5	10.8	1.9	9280	chr3R	20156654	intergenic	not near genes	chr3R	20161294	intergenic	not near genes	chr3R	20165934	intergenic	not near genes	chr3R_23_20160001	chr3R_20160001	RAL-913
4033	chr3R	20245238	20245295	chr3R	20248898	20248955	F-element	20	3660	11.5	0.0	5.8	2.9	3717	chr3R	20245238	3` UTR	Nlg4 +	chr3R	20247096	intergenic	not near genes	chr3R	20248955	intergenic	not near genes	chr3R_20_20245001	chr3R_20245001	RAL-913
4034	chr3R	20266473	20266537	chr3R	20272993	20273058	Burdock	29	6521	2.0	10.5	6.2	4.0	6585	chr3R	20266473	intron	cic +	chr3R	20269766	intron	cic +	chr3R	20273058	intron	cic +	chr3R_29_20265001	chr3R_20265001	RAL-913
4039	chr3R	20330953	20331023	chr3R	20331489	20331546	roo	29	535	11.0	9.0	10.0	2.6	593	chr3R	20330953	intergenic	Sirt2 +	chr3R	20331250	intergenic	Sirt2 +	chr3R	20331546	intergenic	not near genes	chr3R_29_20330001	chr3R_20330001	RAL-913
4047	chr3R	20506548	20506599	chr3R	20507401	20507452	BS	12	850	29.0	33.5	31.2	0.4	904	chr3R	20506548	intergenic	Or92a +	chr3R	20507000	intergenic	CG4288 -	chr3R	20507452	3` UTR	CG4288 -	chr3R_12_20505001	chr3R_20505001	RAL-913
4048	chr3R	20512949	20513034	chr3R	20515711	20515794	opus	30	2758	4.0	0.0	2.0	10.0	2845	chr3R	20512949	intergenic	CG4288 -	chr3R	20514372	intergenic	not near genes	chr3R	20515794	intergenic	not near genes	chr3R_30_20510001	chr3R_20510001	RAL-913
4057	chr3R	20613140	20613148	chr3R	20613271	20613280	INE-1	6	132	14.5	11.0	12.8	0.4	140	chr3R	20613140	intron	CG15923 -	chr3R	20613210	intron	CG15923 -	chr3R	20613280	intron	CG15923 -	chr3R_6_20610001	chr3R_20610001	RAL-913
4079	chr3R	20854466	20854504	chr3R	20859281	20859344	Doc	23	4832	13.0	12.5	12.8	1.7	4878	chr3R	20854466	intron	Ir93a -	chr3R	20856905	intron	Ir93a -	chr3R	20859344	exon	Ir93a -	chr3R_23_20855001	chr3R_20855001	RAL-913
4096	chr3R	21141631	21141704	chr3R	21150161	21150207	Tirant	19	8525	10.5	6.5	8.5	2.0	8576	chr3R	21141631	intron	SNF4Agamma +	chr3R	21145919	intron	SNF4Agamma +	chr3R	21150207	intron	SNF4Agamma +	chr3R_19_21145001	chr3R_21145001	RAL-913
4125	chr3R	21608998	21609008	chr3R	21611656	21611681	NOF	4	2674	27.5	29.0	28.2	0.1	2683	chr3R	21608998	intron	InR -	chr3R	21610340	intron	InR -	chr3R	21611681	intron	InR -	chr3R_4_21610001	chr3R_21610001	RAL-913
4136	chr3R	21761080	21761148	chr3R	21768522	21768590	mdg1	26	7437	7.5	11.0	9.2	2.5	7510	chr3R	21761080	exon	CG42335 +	chr3R	21764835	intron	CG42335 +	chr3R	21768590	exon	CG42335 +	chr3R_26_21760001	chr3R_21760001	RAL-913
4163	chr3R	22234632	22234713	chr3R	22236001	22236082	pogo	29	1368	8.0	4.0	6.0	4.1	1450	chr3R	22234632	intron	SKIP +	chr3R	22235357	intron	SKIP +	chr3R	22236082	intron	SKIP +	chr3R_29_22235001	chr3R_22235001	RAL-913
4164	chr3R	22239485	22239525	chr3R	22248583	22248623	roo	17	9098	15.0	10.5	12.8	1.2	9138	chr3R	22239485	intron	SKIP +	chr3R	22244054	intron	SKIP +	chr3R	22248623	intron	SKIP +	chr3R_17_22240001	chr3R_22240001	RAL-913
4179	chr3R	22450503	22450576	chr3R	22453193	22453250	NOF	32	2683	5.5	8.5	7.0	4.0	2747	chr3R	22450503	intron	CG34376 +	chr3R	22451876	intron	CG34376 +	chr3R	22453250	intron	CG34376 +	chr3R_32_22450001	chr3R_22450001	RAL-913
4209	chr3R	22881191	22881230	chr3R	22884946	22884984	Doc	14	3755	5.0	13.0	9.0	1.4	3793	chr3R	22881191	intergenic	not near genes	chr3R	22883088	intergenic	not near genes	chr3R	22884984	intergenic	not near genes	chr3R_14_22880001	chr3R_22880001	RAL-913
4242	chr3R	23515523	23515531	chr3R	23516734	23516742	1360	7	1211	5.5	0.0	2.8	1.8	1219	chr3R	23515523	intron	Irk2 -	chr3R	23516132	intron	Irk2 -	chr3R	23516742	intron	Irk2 -	chr3R_7_23515001	chr3R_23515001	RAL-913
4247	chr3R	23558349	23558429	chr3R	23560180	23560261	Bari1	27	1831	4.5	8.5	6.5	3.6	1912	chr3R	23558349	intron	beat-IV +	chr3R	23559305	intron	beat-IV +	chr3R	23560261	intron	beat-IV +	chr3R_27_23555001	chr3R_23555001	RAL-913
4253	chr3R	23684653	23684718	chr3R	23685189	23685254	roo	20	532	4.5	10.5	7.5	2.4	601	chr3R	23684653	exon	CG18754 +	chr3R	23684954	intron	CG18754 +	chr3R	23685254	exon	CG18754 +	chr3R_20_23680001	chr3R_23680001	RAL-913
4264	chr3R	23835362	23835426	chr3R	23844562	23844626	roo	28	9199	16.0	1.0	8.5	2.9	9264	chr3R	23835362	intron	CG34355 +	chr3R	23839994	intron	CG34355 +	chr3R	23844626	intron	CG34355 +	chr3R_28_23835001	chr3R_23835001	RAL-913
4265	chr3R	23851039	23851083	chr3R	23858756	23858800	opus	18	7717	8.0	19.5	13.8	1.2	7761	chr3R	23851039	3` UTR	CG34355 +	chr3R	23854920	intergenic	not near genes	chr3R	23858800	intergenic	not near genes	chr3R_18_23850001	chr3R_23850001	RAL-913
4278	chr3R	24072057	24072060	chr3R	24072545	24072548	jockey	4	488	7.5	11.0	9.2	0.4	491	chr3R	24072057	intron	4EHP -	chr3R	24072302	intron	4EHP -	chr3R	24072548	intron	4EHP -	chr3R_4_24070001	chr3R_24070001	RAL-913
4279	chr3R	24072071	24072120	chr3R	24072528	24072606	jockey	20	482	2.0	6.5	4.2	3.8	535	chr3R	24072071	intron	4EHP -	chr3R	24072338	intron	4EHP -	chr3R	24072606	intron	4EHP -	chr3R_20_24070001	chr3R_24070001	RAL-913
4281	chr3R	24076878	24076940	chr3R	24078394	24078457	hobo	22	1515	7.0	9.5	8.2	2.4	1579	chr3R	24076878	intron	4EHP -	chr3R	24077668	intron	4EHP -	chr3R	24078457	intron	4EHP -	chr3R_22_24075001	chr3R_24075001	RAL-913
4287	chr3R	24207171	24207247	chr3R	24212294	24212372	flea	26	5123	6.0	12.5	9.2	2.5	5201	chr3R	24207171	intron	twin -	chr3R	24209772	intron	twin -	chr3R	24212372	intron	twin -	chr3R_26_24205001	chr3R_24205001	RAL-913
4297	chr3R	24493238	24493301	chr3R	24493517	24493580	BS	25	279	10.0	9.0	9.5	2.4	342	chr3R	24493238	intergenic	not near genes	chr3R	24493409	intergenic	not near genes	chr3R	24493580	intergenic	not near genes	chr3R_25_24490001	chr3R_24490001	RAL-913
4302	chr3R	24594629	24594666	chr3R	24594919	24594955	pogo	18	290	10.0	21.0	15.5	1.1	326	chr3R	24594629	intron	mld +	chr3R	24594792	intron	mld +	chr3R	24594955	intron	mld +	chr3R_18_24590001	chr3R_24590001	RAL-913
4310	chr3R	24730052	24730124	chr3R	24732480	24732559	Doc	16	2427	8.0	4.0	6.0	2.3	2507	chr3R	24730052	intron	tok +	chr3R	24731306	intron	tok +	chr3R	24732559	intron	tok +	chr3R_16_24730001	chr3R_24730001	RAL-913
4318	chr3R	24927075	24927152	chr3R	24931919	24931973	Doc	29	4839	11.0	9.5	10.2	2.6	4898	chr3R	24927075	3` UTR	Trf4-2 +	chr3R	24929524	intergenic	not near genes	chr3R	24931973	intergenic	CG11771 +	chr3R_29_24925001	chr3R_24925001	RAL-913
4366	chr3R	25725783	25725847	chr3R	25734993	25735057	roo	40	9210	9.5	6.5	8.0	4.4	9274	chr3R	25725783	intron	LpR2 -	chr3R	25730420	intron	LpR2 -	chr3R	25735057	intron	LpR2 -	chr3R_40_25730001	chr3R_25730001	RAL-913
4372	chr3R	25832656	25832717	chr3R	25841888	25841934	roo	18	9227	5.5	7.0	6.2	2.5	9278	chr3R	25832656	exon	alpha4GT2 +	chr3R	25837295	intron	alpha4GT2 +	chr3R	25841934	exon	alpha4GT2 +	chr3R_18_25835001	chr3R_25835001	RAL-913
4391	chr3R	26215771	26215794	chr3R	26221761	26221793	297	6	6000	7.5	8.0	7.8	0.7	6022	chr3R	26215771	intergenic	not near genes	chr3R	26218782	intergenic	not near genes	chr3R	26221793	intergenic	not near genes	chr3R_6_26215001	chr3R_26215001	RAL-913
4402	chr3R	26376278	26376352	chr3R	26385488	26385576	roo	26	9210	9.0	0.0	4.5	4.7	9298	chr3R	26376278	intergenic	not near genes	chr3R	26380927	intergenic	not near genes	chr3R	26385576	intergenic	not near genes	chr3R_26_26380001	chr3R_26380001	RAL-913
4408	chr3R	26510471	26510534	chr3R	26519576	26519639	roo	20	9107	2.5	11.5	7.0	2.5	9168	chr3R	26510471	intron	plum -	chr3R	26515055	intron	plum -	chr3R	26519639	intron,5` UTR	plum -,CR45226 +	chr3R_20_26515001	chr3R_26515001	RAL-913
4411	chr3R	26558282	26558349	chr3R	26565645	26565711	Stalker4	15	7357	12.5	9.5	11.0	1.2	7429	chr3R	26558282	intron	scrib +	chr3R	26561996	intron	scrib +	chr3R	26565711	intron	scrib +	chr3R_15_26560001	chr3R_26560001	RAL-913
4414	chr3R	26642698	26642754	chr3R	26643131	26643198	jockey	35	441	13.5	10.0	11.8	2.7	500	chr3R	26642698	intergenic	not near genes	chr3R	26642948	intergenic	not near genes	chr3R	26643198	intergenic	not near genes	chr3R_35_26640001	chr3R_26640001	RAL-913
4423	chr3R	26810512	26810576	chr3R	26811042	26811111	roo	24	533	7.5	12.5	10.0	2.2	599	chr3R	26810512	intron	Tl +	chr3R	26810812	intron	Tl +	chr3R	26811111	intron	Tl +	chr3R_24_26810001	chr3R_26810001	RAL-913
4431	chr3R	27007362	27007427	chr3R	27016547	27016611	roo	32	9185	12.5	10.5	11.5	2.6	9249	chr3R	27007362	intron	RYa-R +	chr3R	27011986	intron	RYa-R +	chr3R	27016611	intron	RYa-R +	chr3R_32_27010001	chr3R_27010001	RAL-913
4435	chr3R	27140475	27140539	chr3R	27148135	27148199	412	28	7659	14.0	7.5	10.8	2.4	7724	chr3R	27140475	intron	CG6051 -	chr3R	27144337	intron	CG6051 -	chr3R	27148199	intron	CG6051 -	chr3R_28_27140001	chr3R_27140001	RAL-913
4440	chr3R	27342754	27342821	chr3R	27351385	27351402	Tirant	30	8628	8.5	12.5	10.5	2.6	8648	chr3R	27342754	intron	CG42534 +	chr3R	27347078	intron	CG42534 +	chr3R	27351402	intron	CG42534 +	chr3R_30_27345001	chr3R_27345001	RAL-913
4452	chr3R	27521116	27521174	chr3R	27530375	27530433	roo	20	9259	12.0	16.0	14.0	1.3	9317	chr3R	27521116	intron	CG12885 +	chr3R	27525774	intron	CG12885 +	chr3R	27530433	intron	CG12885 +	chr3R_20_27525001	chr3R_27525001	RAL-913
4461	chr3R	27725537	27725584	chr3R	27731029	27731076	I-element	15	5492	9.0	10.5	9.8	1.4	5539	chr3R	27725537	intergenic	not near genes	chr3R	27728306	intergenic	not near genes	chr3R	27731076	intergenic	not near genes	chr3R_15_27725001	chr3R_27725001	RAL-913
4468	chr3R	27856721	27856756	chr3R	27858254	27858289	hopper2	19	1532	12.5	13.0	12.8	1.4	1568	chr3R	27856721	intron	CG34353 -	chr3R	27857505	intron	CG34353 -	chr3R	27858289	intron	CG34353 -	chr3R_19_27855001	chr3R_27855001	RAL-913
4469	chr3R	27856758	27856780	chr3R	27858240	27858313	hopper2	11	1526	10.0	11.0	10.5	1.0	1555	chr3R	27856758	intron	CG34353 -	chr3R	27857536	intron	CG34353 -	chr3R	27858313	intron	CG34353 -	chr3R_11_27855001	chr3R_27855001	RAL-913
4470	chr3R	27862921	27862973	chr3R	27868265	27868328	Transpac	13	5348	6.5	9.5	8.0	1.4	5407	chr3R	27862921	intron	CG34353 -	chr3R	27865624	intron	CG34353 -	chr3R	27868328	intron	CG34353 -	chr3R_13_27865001	chr3R_27865001	RAL-913
4471	chr3R	27875660	27875723	chr3R	27882765	27882828	297	33	7103	9.0	10.0	9.5	3.1	7168	chr3R	27875660	intron	CG34353 -	chr3R	27879244	intron	CG34353 -	chr3R	27882828	intron	CG34353 -	chr3R_33_27875001	chr3R_27875001	RAL-913
4477	chr3R	28068452	28068518	chr3R	28073944	28074010	I-element	10	5487	0.5	10.0	5.2	1.6	5558	chr3R	28068452	intron	CG34362 +	chr3R	28071231	intron	CG34362 +	chr3R	28074010	intron	CG34362 +	chr3R_10_28070001	chr3R_28070001	RAL-913
4482	chr3R	28173621	28173698	chr3R	28181101	28181183	mdg1	26	7481	7.5	7.0	7.2	3.2	7562	chr3R	28173621	intron	CG34354 +	chr3R	28177402	intron	CG34354 +	chr3R	28181183	intron	CG34354 +	chr3R_26_28175001	chr3R_28175001	RAL-913
4483	chr3R	28253295	28253361	chr3R	28255855	28255865	jockey	26	2557	10.5	9.0	9.8	2.4	2570	chr3R	28253295	intergenic	not near genes	chr3R	28254580	intergenic	not near genes	chr3R	28255865	intergenic	not near genes	chr3R_26_28250001	chr3R_28250001	RAL-913
4487	chr3R	28302059	28302120	chr3R	28302551	28302609	jockey	33	490	12.0	10.0	11.0	2.8	550	chr3R	28302059	intergenic	not near genes	chr3R	28302334	intergenic	not near genes	chr3R	28302609	intergenic	not near genes	chr3R_33_28300001	chr3R_28300001	RAL-913
4490	chr3R	28320569	28320594	chr3R	28320688	28320695	roo	5	117	26.5	18.0	22.2	0.2	126	chr3R	28320569	3` UTR	larp -	chr3R	28320632	exon	larp -	chr3R	28320695	exon	larp -	chr3R_5_28320001	chr3R_28320001	RAL-913
4517	chr3R	28758235	28758254	chr3R	28763902	28763921	roo	10	5667	21.5	0.0	10.8	0.8	5686	chr3R	28758235	intergenic	aqrs -	chr3R	28761078	intergenic	not near genes	chr3R	28763921	intergenic	not near genes	chr3R_10_28760001	chr3R_28760001	RAL-913
4518	chr3R	28758272	28758282	chr3R	28771329	28771339	Stalker4	4	13057	11.5	7.5	9.5	0.4	13067	chr3R	28758272	intergenic	aqrs -	chr3R	28764806	intergenic	not near genes	chr3R	28771339	intergenic	not near genes	chr3R_4_28760001	chr3R_28760001	RAL-913
4519	chr3R	28758285	28758317	chr3R	28771342	28771374	Stalker4	15	13057	5.5	10.0	7.8	1.7	13089	chr3R	28758285	intergenic	aqrs -	chr3R	28764830	intergenic	not near genes	chr3R	28771374	intergenic	not near genes	chr3R_15_28760001	chr3R_28760001	RAL-913
4521	chr3R	28792811	28792896	chr3R	28797967	28797996	jockey	20	5132	4.0	11.0	7.5	2.4	5185	chr3R	28792811	intergenic	not near genes	chr3R	28795404	intergenic	not near genes	chr3R	28797996	intergenic	not near genes	chr3R_20_28795001	chr3R_28795001	RAL-913
4539	chr3R	29079343	29079356	chr3R	29080765	29080778	NOF	4	1422	17.5	11.0	14.2	0.3	1435	chr3R	29079343	intron	CG11873 +	chr3R	29080060	intron	CG11873 +	chr3R	29080778	intron	CG11873 +	chr3R_4_29080001	chr3R_29080001	RAL-913
4540	chr3R	29079357	29079398	chr3R	29080757	29080813	NOF	16	1418	11.5	10.0	10.8	1.4	1456	chr3R	29079357	intron	CG11873 +	chr3R	29080085	intron	CG11873 +	chr3R	29080813	intron	CG11873 +	chr3R_16_29080001	chr3R_29080001	RAL-913
4557	chr3R	29319785	29319848	chr3R	29320154	29320217	jockey	20	369	12.5	8.5	10.5	1.7	432	chr3R	29319785	intergenic	Cnx99A -	chr3R	29320001	intergenic	Cnx99A -	chr3R	29320217	intergenic	not near genes	chr3R_20_29320001	chr3R_29320001	RAL-913
4567	chr3R	29406574	29406639	chr3R	29407909	29407975	jockey	14	1328	8.5	12.5	10.5	1.2	1401	chr3R	29406574	intron	Ptp99A +	chr3R	29407274	intron	Ptp99A +	chr3R	29407975	intron	Ptp99A +	chr3R_14_29405001	chr3R_29405001	RAL-913
4589	chr3R	29738223	29738285	chr3R	29739740	29739802	hobo	36	1516	15.0	7.5	11.2	3.0	1579	chr3R	29738223	intergenic	CG1969 +,CG7598 +	chr3R	29739012	intron	CG1969 +	chr3R	29739802	5` UTR	CG1969 +	chr3R_36_29735001	chr3R_29735001	RAL-913
4592	chr3R	29760323	29760380	chr3R	29761574	29761631	pogo	17	1251	29.0	21.5	25.2	0.6	1308	chr3R	29760323	intergenic	not near genes	chr3R	29760977	intergenic	not near genes	chr3R	29761631	intergenic	not near genes	chr3R_17_29760001	chr3R_29760001	RAL-913
4596	chr3R	29881977	29882049	chr3R	29891184	29891231	roo	28	9206	9.0	10.0	9.5	2.7	9254	chr3R	29881977	intron	CG31038 +	chr3R	29886604	intron	CG31038 +	chr3R	29891231	intron	CG31038 +	chr3R_28_29885001	chr3R_29885001	RAL-913
4608	chr3R	30084815	30084879	chr3R	30086333	30086339	hobo	13	1511	2.5	10.5	6.5	1.7	1524	chr3R	30084815	intron	sima +	chr3R	30085577	intron	sima +	chr3R	30086339	intron	sima +	chr3R_13_30085001	chr3R_30085001	RAL-913
4613	chr3R	30238719	30238785	chr3R	30239933	30239999	1360	35	1211	7.5	11.5	9.5	3.3	1280	chr3R	30238719	intergenic	not near genes	chr3R	30239359	intergenic	not near genes	chr3R	30239999	intergenic	not near genes	chr3R_35_30235001	chr3R_30235001	RAL-913
4619	chr3R	30317275	30317345	chr3R	30324918	30324987	roo	26	7640	6.0	7.5	6.8	3.3	7712	chr3R	30317275	intron	hdc +	chr3R	30321131	intron	hdc +	chr3R	30324987	intron	hdc +	chr3R_26_30320001	chr3R_30320001	RAL-913
4626	chr3R	30375498	30375562	chr3R	30383173	30383237	412	22	7675	13.5	11.5	12.5	1.6	7739	chr3R	30375498	intergenic	not near genes	chr3R	30379368	intergenic	not near genes	chr3R	30383237	intergenic	not near genes	chr3R_22_30375001	chr3R_30375001	RAL-913
4627	chr3R	30396175	30396241	chr3R	30404491	30404557	roo	32	8315	11.0	8.5	9.8	3.0	8382	chr3R	30396175	intergenic	not near genes	chr3R	30400366	intergenic	not near genes	chr3R	30404557	5` UTR	CR45570 +	chr3R_32_30400001	chr3R_30400001	RAL-913
4633	chr3R	30480432	30480459	chr3R	30482950	30482967	jockey	7	2514	13.5	4.5	9.0	0.7	2535	chr3R	30480432	intron	PH4alphaEFB +	chr3R	30481700	intron	PH4alphaEFB +	chr3R	30482967	intron	PH4alphaEFB +	chr3R_7_30480001	chr3R_30480001	RAL-913
4634	chr3R	30480462	30480509	chr3R	30482947	30483003	jockey	22	2515	6.5	4.0	5.2	3.5	2541	chr3R	30480462	intron	PH4alphaEFB +	chr3R	30481732	intron	PH4alphaEFB +	chr3R	30483003	intron	PH4alphaEFB +	chr3R_22_30480001	chr3R_30480001	RAL-913
4645	chr3R	30679478	30679549	chr3R	30686997	30687068	blood	28	7514	7.0	9.0	8.0	3.1	7590	chr3R	30679478	intergenic	not near genes	chr3R	30683273	intergenic	not near genes	chr3R	30687068	intergenic	not near genes	chr3R_28_30680001	chr3R_30680001	RAL-913
4650	chr3R	30818771	30818837	chr3R	30820386	30820452	1360	22	1614	11.5	12.0	11.8	1.7	1681	chr3R	30818771	intron	cindr +	chr3R	30819612	intron	cindr +	chr3R	30820452	intron	cindr +	chr3R_22_30815001	chr3R_30815001	RAL-913
4669	chr3R	31074190	31074248	chr3R	31081838	31081896	springer	21	7646	14.0	10.5	12.2	1.6	7706	chr3R	31074190	intron	Sox100B +	chr3R	31078043	intron	Sox100B +	chr3R	31081896	exon	Sox100B +	chr3R_21_31075001	chr3R_31075001	RAL-913
4679	chr3R	31279349	31279357	chr3R	31285570	31285598	diver	6	6233	24.5	12.5	18.5	0.3	6249	chr3R	31279349	intergenic	not near genes	chr3R	31282474	intergenic	not near genes	chr3R	31285598	intergenic	not near genes	chr3R_6_31280001	chr3R_31280001	RAL-913
4680	chr3R	31279360	31279401	chr3R	31285568	31285627	diver	19	6237	10.5	12.0	11.2	1.6	6267	chr3R	31279360	intergenic	not near genes	chr3R	31282494	intergenic	not near genes	chr3R	31285627	intergenic	not near genes	chr3R_19_31280001	chr3R_31280001	RAL-913
4682	chr3R	31330400	31330409	chr3R	31335652	31335661	copia	4	5250	18.5	12.0	15.2	0.2	5261	chr3R	31330400	intron	CG34347 +	chr3R	31333030	intron	CG34347 +	chr3R	31335661	intron	CG34347 +	chr3R_4_31330001	chr3R_31330001	RAL-913
4685	chr3R	31413047	31413054	chr3R	31418297	31418304	copia	4	5248	17.0	6.5	11.8	0.3	5257	chr3R	31413047	intron	Gprk2 +	chr3R	31415676	intron	Gprk2 +	chr3R	31418304	intron	Gprk2 +	chr3R_4_31415001	chr3R_31415001	RAL-913
4686	chr3R	31413061	31413123	chr3R	31418294	31418306	copia	21	5241	2.5	5.5	4.0	4.2	5245	chr3R	31413061	intron	Gprk2 +	chr3R	31415684	intron	Gprk2 +	chr3R	31418306	intron	Gprk2 +	chr3R_21_31415001	chr3R_31415001	RAL-913
4699	chr3R	31691494	31691513	chr3R	31696310	31696329	Doc	9	4816	18.0	12.5	15.2	0.6	4835	chr3R	31691494	intergenic	not near genes	chr3R	31693912	intergenic	not near genes	chr3R	31696329	intergenic	not near genes	chr3R_9_31690001	chr3R_31690001	RAL-913
4700	chr3R	31691516	31691555	chr3R	31696305	31696366	Doc	28	4811	9.0	11.5	10.2	2.5	4850	chr3R	31691516	intergenic	not near genes	chr3R	31693941	intergenic	not near genes	chr3R	31696366	intergenic	not near genes	chr3R_28_31690001	chr3R_31690001	RAL-913
4715	chr3R	31997947	31998015	chr3R	32005467	32005518	blood	22	7517	5.0	2.5	3.8	4.6	7571	chr3R	31997947	intron	heph -	chr3R	32001732	intron	heph -	chr3R	32005518	intron	heph -	chr3R_22_32000001	chr3R_32000001	RAL-913
4717	chr4	76453	76503	chr4	81946	81996	I-element	29	5491	12.0	11.5	11.8	2.3	5543	chr4	76453	intron	pan +	chr4	79224	intron	pan +	chr4	81996	intron	pan +	chr4_29_75001	chr4_75001	RAL-913
4718	chr4	319950	320015	chr4	328176	328221	Stalker2	28	8225	8.5	7.5	8.0	3.1	8271	chr4	319950	3` UTR	CG32850 +	chr4	324086	intron	CG32850 +	chr4	328221	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_28_320001	chr4_320001	RAL-913
4719	chr4	671567	671585	chr4	680200	680218	Tirant	10	8633	18.5	15.5	17.0	0.6	8651	chr4	671567	intron	CG11360 +	chr4	675892	intron	CG11360 +	chr4	680218	intron	CG11360 +	chr4_10_675001	chr4_675001	RAL-913
4720	chr4	671587	671627	chr4	680199	680260	Tirant	21	8630	11.5	15.5	13.5	1.4	8673	chr4	671587	intron	CG11360 +	chr4	675924	intron	CG11360 +	chr4	680260	intron	CG11360 +	chr4_21_675001	chr4_675001	RAL-913
4724	chrX	295809	295876	chrX	303479	303546	412	24	7669	8.5	7.5	8.0	2.7	7737	chrX	295809	intron	CG3777 +	chrX	299678	intron	CG3777 +	chrX	303546	intron	CG3777 +	chrX_24_295001	chrX_295001	RAL-913
4725	chrX	318436	318490	chrX	323563	323626	flea	19	5136	5.5	7.0	6.2	2.6	5190	chrX	318436	intron,intron	CG3777 +,CG32816 -	chrX	321031	intron,intron	CG3777 +,CG32816 -	chrX	323626	intron,intron	CG3777 +,CG32816 -	chrX_19_320001	chrX_320001	RAL-913
4727	chrX	428381	428444	chrX	434614	434679	3S18	29	6235	7.0	9.5	8.2	3.2	6298	chrX	428381	intron	CG32816 -	chrX	431530	intron	CG32816 -	chrX	434679	intron	CG32816 -	chrX_29_430001	chrX_430001	RAL-913
4732	chrX	551382	551395	chrX	558993	559007	412	5	7612	18.0	6.5	12.2	0.4	7625	chrX	551382	intron	Appl +	chrX	555194	intron	Appl +	chrX	559007	intron	Appl +	chrX_5_555001	chrX_555001	RAL-913
4733	chrX	551397	551450	chrX	558988	559062	412	21	7605	7.5	6.5	7.0	2.6	7665	chrX	551397	intron	Appl +	chrX	555230	intron	Appl +	chrX	559062	intron	Appl +	chrX_21_555001	chrX_555001	RAL-913
4742	chrX	812230	812292	chrX	817903	817969	297	20	5678	9.5	10.0	9.8	1.9	5739	chrX	812230	intron	CG43867 -	chrX	815100	intron	CG43867 -	chrX	817969	intron	CG43867 -	chrX_20_815001	chrX_815001	RAL-913
4743	chrX	827559	827632	chrX	835401	835468	roo	20	7837	10.5	11.5	11.0	1.7	7909	chrX	827559	intron	CG43867 -	chrX	831514	intron	CG43867 -	chrX	835468	intron	CG43867 -	chrX_20_830001	chrX_830001	RAL-913
4745	chrX	906667	906727	chrX	908506	908566	S-element	20	1836	9.0	10.0	9.5	1.9	1899	chrX	906667	intron	CG43867 -	chrX	907616	intron	CG43867 -	chrX	908566	intron	CG43867 -	chrX_20_905001	chrX_905001	RAL-913
4750	chrX	1063729	1063749	chrX	1072557	1072592	roo	7	8841	15.0	9.5	12.2	0.5	8863	chrX	1063729	intron	CR44779 +	chrX	1068160	intron	CR44779 +	chrX	1072592	intron	CR44779 +	chrX_7_1065001	chrX_1065001	RAL-913
4751	chrX	1357733	1357796	chrX	1367953	1368016	Doc	25	10219	15.0	9.5	12.2	1.9	10283	chrX	1357733	intergenic	png -	chrX	1362874	intergenic	not near genes	chrX	1368016	intergenic	not near genes	chrX_25_1360001	chrX_1360001	RAL-913
4752	chrX	1517999	1518062	chrX	1523451	1523514	jockey	22	5451	8.0	12.0	10.0	2.0	5515	chrX	1517999	intergenic	inc +	chrX	1520756	intergenic	not near genes	chrX	1523514	intergenic	not near genes	chrX_22_1520001	chrX_1520001	RAL-913
4754	chrX	1930492	1930557	chrX	1938113	1938178	opus	33	7620	7.0	3.5	5.2	5.3	7686	chrX	1930492	3` UTR	CG11596 +	chrX	1934335	intergenic	not near genes	chrX	1938178	3` UTR	CG3857 -	chrX_33_1930001	chrX_1930001	RAL-913
4755	chrX	1954843	1954872	chrX	1962832	1962846	Stalker2	5	7984	12.0	3.5	7.8	0.6	8003	chrX	1954843	intron	Hr4 +	chrX	1958844	intron	Hr4 +	chrX	1962846	intron	Hr4 +	chrX_5_1955001	chrX_1955001	RAL-913
4756	chrX	1954874	1954919	chrX	1962829	1962863	Stalker2	11	7967	4.0	2.5	3.2	2.6	7989	chrX	1954874	intron	Hr4 +	chrX	1958868	intron	Hr4 +	chrX	1962863	intron	Hr4 +	chrX_11_1955001	chrX_1955001	RAL-913
4759	chrX	2308803	2308819	chrX	2317434	2317450	Tirant	5	8630	7.5	13.0	10.2	0.4	8647	chrX	2308803	intron	phl +	chrX	2313126	intron	phl +	chrX	2317450	intron	phl +	chrX_5_2310001	chrX_2310001	RAL-913
4760	chrX	2399800	2399832	chrX	2408203	2408204	roo	6	8394	13.0	1.5	7.2	0.7	8404	chrX	2399800	intergenic	not near genes	chrX	2404002	intergenic	not near genes	chrX	2408204	intergenic	not near genes	chrX_6_2400001	chrX_2400001	RAL-913
4761	chrX	2399839	2399866	chrX	2408192	2408257	roo	7	8380	8.0	0.0	4.0	1.4	8418	chrX	2399839	intergenic	not near genes	chrX	2404048	intergenic	not near genes	chrX	2408257	intergenic	not near genes	chrX_7_2400001	chrX_2400001	RAL-913
4766	chrX	2610362	2610410	chrX	2617510	2617555	HMS-Beagle	10	7160	6.5	10.5	8.5	1.1	7193	chrX	2610362	intergenic	CG8636 -	chrX	2613958	intergenic	not near genes	chrX	2617555	intergenic	Tsp3A -	chrX_10_2610001	chrX_2610001	RAL-913
4768	chrX	2664344	2664411	chrX	2665540	2665595	1360	29	1195	7.5	8.0	7.8	3.3	1251	chrX	2664344	intron	sgg +	chrX	2664970	intron	sgg +	chrX	2665595	intron	sgg +	chrX_29_2660001	chrX_2660001	RAL-913
4771	chrX	2823755	2823772	chrX	2832353	2832363	roo	5	8596	15.5	12.5	14.0	0.3	8608	chrX	2823755	intron	kirre +	chrX	2828059	intron	kirre +	chrX	2832363	intron	kirre +	chrX_5_2825001	chrX_2825001	RAL-913
4772	chrX	2844854	2844924	chrX	2852314	2852384	mdg1	22	7460	10.5	8.0	9.2	2.2	7530	chrX	2844854	intron	kirre +	chrX	2848619	intron	kirre +	chrX	2852384	intron	kirre +	chrX_22_2845001	chrX_2845001	RAL-913
4775	chrX	3057978	3058045	chrX	3058269	3058317	pogo	28	290	5.5	6.5	6.0	4.0	339	chrX	3057978	intron	kirre +	chrX	3058148	intron	kirre +	chrX	3058317	intron	kirre +	chrX_28_3055001	chrX_3055001	RAL-913
4776	chrX	3075587	3075655	chrX	3080944	3080979	Transpac	26	5355	8.0	3.5	5.8	3.8	5392	chrX	3075587	intron	kirre +	chrX	3078283	intron	kirre +	chrX	3080979	intron	kirre +	chrX_26_3075001	chrX_3075001	RAL-913
4784	chrX	3218491	3218510	chrX	3227690	3227709	roo	5	9199	2.5	11.0	6.8	0.6	9218	chrX	3218491	intron	dnc +	chrX	3223100	intron	dnc +	chrX	3227709	intron	dnc +	chrX_5_3220001	chrX_3220001	RAL-913
4790	chrX	3414978	3415004	chrX	3421213	3421224	3S18	8	6232	13.0	8.5	10.8	0.7	6246	chrX	3414978	intron,intron	CR44999 +,CG12535 -	chrX	3418101	intron,intron	CR44999 +,CG12535 -	chrX	3421224	intron,intron	CR44999 +,CG12535 -	chrX_8_3415001	chrX_3415001	RAL-913
4791	chrX	3415005	3415037	chrX	3421202	3421272	3S18	17	6231	7.0	8.0	7.5	2.0	6267	chrX	3415005	intron,intron	CR44999 +,CG12535 -	chrX	3418138	intron,intron	CR44999 +,CG12535 -	chrX	3421272	intron,intron	CR44999 +,CG12535 -	chrX_17_3415001	chrX_3415001	RAL-913
4795	chrX	3493051	3493083	chrX	3502260	3502292	roo	12	9207	14.0	4.0	9.0	1.2	9241	chrX	3493051	intron,intron	CR44999 +,Gas8 -	chrX	3497672	intron,intron	CR44999 +,Gas8 -	chrX	3502292	intron,intron	CR44999 +,Gas8 -	chrX_12_3495001	chrX_3495001	RAL-913
4798	chrX	3597509	3597574	chrX	3619727	3619792	roo	22	22216	7.0	7.0	7.0	2.8	22283	chrX	3597509	intron	AstA-R1 +	chrX	3608650	intron	AstA-R1 +	chrX	3619792	intron	AstA-R1 +	chrX_22_3605001	chrX_3605001	RAL-913
4805	chrX	3726726	3726786	chrX	3730168	3730233	NOF	22	3446	8.0	8.5	8.2	2.4	3507	chrX	3726726	intron	tlk +	chrX	3728480	intron	tlk +	chrX	3730233	intron	tlk +	chrX_22_3725001	chrX_3725001	RAL-913
4807	chrX	3842302	3842353	chrX	3842570	3842621	pogo	25	268	7.5	7.5	7.5	2.9	319	chrX	3842302	intron	ec +	chrX	3842462	intron	ec +	chrX	3842621	intron	ec +	chrX_25_3840001	chrX_3840001	RAL-913
4811	chrX	3986832	3986889	chrX	3994515	3994572	412	24	7683	9.0	9.5	9.2	2.4	7740	chrX	3986832	intergenic	not near genes	chrX	3990702	intergenic	not near genes	chrX	3994572	intergenic	not near genes	chrX_24_3990001	chrX_3990001	RAL-913
4819	chrX	4157847	4157915	chrX	4164950	4165018	297	27	7102	5.0	4.5	4.8	4.7	7171	chrX	4157847	intron	Fas2 -	chrX	4161432	intron	Fas2 -	chrX	4165018	intron	Fas2 -	chrX_27_4160001	chrX_4160001	RAL-913
4833	chrX	4700352	4700417	chrX	4700745	4700810	jockey	23	392	4.5	8.5	6.5	3.1	458	chrX	4700352	3` UTR	ctp +	chrX	4700581	3` UTR	ctp +	chrX	4700810	3` UTR	ctp +	chrX_23_4700001	chrX_4700001	RAL-913
4835	chrX	4731775	4731782	chrX	4736918	4736925	jockey	4	5143	23.0	6.5	14.8	0.3	5150	chrX	4731775	intergenic	not near genes	chrX	4734350	intergenic	not near genes	chrX	4736925	intergenic	not near genes	chrX_4_4730001	chrX_4730001	RAL-913
4838	chrX	4763219	4763274	chrX	4763757	4763812	Stalker4	17	536	10.5	14.0	12.2	1.3	593	chrX	4763219	intergenic	not near genes	chrX	4763516	intergenic	not near genes	chrX	4763812	intergenic	not near genes	chrX_17_4760001	chrX_4760001	RAL-913
4839	chrX	4792355	4792399	chrX	4792817	4792867	jockey	14	480	7.0	11.0	9.0	1.4	512	chrX	4792355	intergenic	not near genes	chrX	4792611	intergenic	not near genes	chrX	4792867	intergenic	not near genes	chrX_14_4790001	chrX_4790001	RAL-913
4840	chrX	4827938	4827992	chrX	4835353	4835408	Stalker4	20	7414	10.0	7.0	8.5	2.1	7470	chrX	4827938	intergenic	not near genes	chrX	4831673	intergenic	not near genes	chrX	4835408	intergenic	not near genes	chrX_20_4830001	chrX_4830001	RAL-913
4842	chrX	4989998	4990067	chrX	4997262	4997331	roo	28	7264	10.0	7.5	8.8	2.9	7333	chrX	4989998	intron	CR44833 -	chrX	4993664	intron	CR44833 -	chrX	4997331	intron	CR44833 -	chrX_28_4990001	chrX_4990001	RAL-913
4844	chrX	5096239	5096299	chrX	5103854	5103914	springer	20	7614	4.0	7.0	5.5	3.1	7675	chrX	5096239	intron,intron	CG15465 +,rg +	chrX	5100076	intron,intron	CG15465 +,rg +	chrX	5103914	intron,intron	CG15465 +,rg +	chrX_20_5100001	chrX_5100001	RAL-913
4849	chrX	5338681	5338735	chrX	5339968	5340026	jockey	10	1290	5.5	1.5	3.5	2.2	1345	chrX	5338681	intergenic	not near genes	chrX	5339354	intergenic	not near genes	chrX	5340026	intergenic	SK +	chrX_10_5335001	chrX_5335001	RAL-913
4854	chrX	5481072	5481080	chrX	5485082	5485090	I-element	6	4010	0.0	4.5	2.2	1.9	4018	chrX	5481072	intron	SPR +	chrX	5483081	intron	SPR +	chrX	5485090	intron	SPR +	chrX_6_5480001	chrX_5480001	RAL-913
4855	chrX	5524804	5524834	chrX	5528717	5528722	412	11	3910	6.0	4.5	5.2	1.8	3918	chrX	5524804	intergenic	snoRNA:Psi28S-3342 -	chrX	5526763	intergenic	not near genes	chrX	5528722	intergenic	Vsx2 -	chrX_11_5525001	chrX_5525001	RAL-913
4856	chrX	5537666	5537686	chrX	5537799	5537819	roo	5	131	16.0	5.5	10.8	0.4	153	chrX	5537666	intron	Vsx2 -	chrX	5537742	intron	Vsx2 -	chrX	5537819	intron	Vsx2 -	chrX_5_5535001	chrX_5535001	RAL-913
4858	chrX	5727373	5727412	chrX	5732162	5732201	Doc	15	4789	6.5	3.5	5.0	2.5	4828	chrX	5727373	intron	CG32758 -	chrX	5729787	intron	CG32758 -	chrX	5732201	intron	CG32758 -	chrX_15_5725001	chrX_5725001	RAL-913
4862	chrX	5883765	5883777	chrX	5884056	5884068	pogo	4	291	16.5	8.0	12.2	0.3	303	chrX	5883765	intron	CR45668 -	chrX	5883916	intron	CR45668 -	chrX	5884068	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-913
4863	chrX	5883779	5883834	chrX	5884055	5884125	pogo	16	290	7.0	8.0	7.5	1.9	346	chrX	5883779	intron	CR45668 -	chrX	5883952	intron	CR45668 -	chrX	5884125	intron	CR45668 -	chrX_16_5880001	chrX_5880001	RAL-913
4864	chrX	5884118	5884186	chrX	5884409	5884477	pogo	25	289	7.0	10.0	8.5	2.6	359	chrX	5884118	intron	CR45668 -	chrX	5884298	intron	CR45668 -	chrX	5884477	intron	CR45668 -	chrX_25_5880001	chrX_5880001	RAL-913
4868	chrX	6171544	6171605	chrX	6179027	6179088	Quasimodo	15	7483	10.5	11.5	11.0	1.2	7544	chrX	6171544	intron	Ca-alpha1T -	chrX	6175316	intron	Ca-alpha1T -	chrX	6179088	intron	Ca-alpha1T -	chrX_15_6175001	chrX_6175001	RAL-913
4873	chrX	6335219	6335240	chrX	6337779	6337800	Tirant	10	2560	0.0	19.0	9.5	1.0	2581	chrX	6335219	intergenic	not near genes	chrX	6336510	intergenic	not near genes	chrX	6337800	5` UTR	CG3842 +	chrX_10_6335001	chrX_6335001	RAL-913
4876	chrX	6445262	6445333	chrX	6451070	6451141	297	7	5808	8.0	8.0	8.0	0.8	5879	chrX	6445262	intron	CG42340 -	chrX	6448202	intron	CG42340 -	chrX	6451141	intron	CG42340 -	chrX_7_6445001	chrX_6445001	RAL-913
4879	chrX	6562774	6562846	chrX	6571306	6571378	Tirant	37	8528	8.0	13.0	10.5	3.2	8604	chrX	6562774	intron	CG34417 +	chrX	6567076	intron	CG34417 +	chrX	6571378	intron	CG34417 +	chrX_37_6565001	chrX_6565001	RAL-913
4882	chrX	6605442	6605496	chrX	6608514	6608568	Burdock	17	3072	8.0	10.0	9.0	1.7	3126	chrX	6605442	intron	pigs +	chrX	6607005	intron	pigs +	chrX	6608568	intron	pigs +	chrX_17_6605001	chrX_6605001	RAL-913
4896	chrX	7023558	7023634	chrX	7030998	7031054	Tabor	28	7437	6.0	7.5	6.8	3.6	7496	chrX	7023558	intron	CG12541 -	chrX	7027306	intron	CG12541 -	chrX	7031054	intron	CG12541 -	chrX_28_7025001	chrX_7025001	RAL-913
4897	chrX	7125223	7125262	chrX	7134432	7134471	roo	12	9209	0.5	10.5	5.5	1.8	9248	chrX	7125223	intergenic	not near genes	chrX	7129847	intergenic	not near genes	chrX	7134471	intergenic	not near genes	chrX_12_7125001	chrX_7125001	RAL-913
4904	chrX	7480785	7480791	chrX	7482348	7482354	jockey	4	1563	11.5	16.0	13.8	0.3	1569	chrX	7480785	intergenic	not near genes	chrX	7481570	intergenic	not near genes	chrX	7482354	intergenic	not near genes	chrX_4_7480001	chrX_7480001	RAL-913
4907	chrX	7702870	7702924	chrX	7703359	7703413	jockey	20	489	8.0	7.5	7.8	2.3	543	chrX	7702870	intron	CHES-1-like -	chrX	7703142	intron	CHES-1-like -	chrX	7703413	intron	CHES-1-like -	chrX_20_7700001	chrX_7700001	RAL-913
4910	chrX	7845681	7845702	chrX	7847222	7847243	hopper2	7	1540	11.0	8.0	9.5	0.7	1562	chrX	7845681	intergenic	not near genes	chrX	7846462	intergenic	not near genes	chrX	7847243	intergenic	not near genes	chrX_7_7845001	chrX_7845001	RAL-913
4911	chrX	7845705	7845756	chrX	7847220	7847269	hopper2	21	1538	4.5	7.5	6.0	3.0	1564	chrX	7845705	intergenic	not near genes	chrX	7846487	intergenic	not near genes	chrX	7847269	intergenic	not near genes	chrX_21_7845001	chrX_7845001	RAL-913
4914	chrX	8031402	8031446	chrX	8035761	8035805	Juan	18	4359	6.0	10.5	8.2	2.0	4403	chrX	8031402	intergenic	not near genes	chrX	8033604	intergenic	not near genes	chrX	8035805	3` UTR	CG2233 -	chrX_18_8030001	chrX_8030001	RAL-913
4924	chrX	8364801	8364869	chrX	8365248	8365266	BS	22	444	5.0	6.0	5.5	3.4	465	chrX	8364801	intron	nAChRalpha3 -	chrX	8365034	intron	nAChRalpha3 -	chrX	8365266	intron	nAChRalpha3 -	chrX_22_8365001	chrX_8365001	RAL-913
4932	chrX	8922285	8922351	chrX	8922769	8922835	jockey	23	484	11.5	9.0	10.2	2.1	550	chrX	8922285	intron	rdgA +	chrX	8922560	intron	rdgA +	chrX	8922835	intron	rdgA +	chrX_23_8920001	chrX_8920001	RAL-913
4933	chrX	8948707	8948786	chrX	8956267	8956346	roo	13	7558	7.0	5.5	6.2	1.8	7639	chrX	8948707	intron	rdgA +	chrX	8952526	intron	rdgA +	chrX	8956346	intron	rdgA +	chrX_13_8950001	chrX_8950001	RAL-913
4947	chrX	9508097	9508151	chrX	9509665	9509719	jockey	22	1566	8.0	11.0	9.5	2.1	1622	chrX	9508097	intron	CG32700 -	chrX	9508908	intron	CG32700 -	chrX	9509719	intron	CG32700 -	chrX_22_9505001	chrX_9505001	RAL-913
4949	chrX	9575748	9575813	chrX	9576117	9576187	mdg3	23	373	8.0	4.0	6.0	3.3	439	chrX	9575748	intron,exon	CG32699 -,CG42395 -	chrX	9575968	intron,intron	CG32699 -,CG42395 -	chrX	9576187	intron,5` UTR	CG32699 -,CG42395 -	chrX_23_9575001	chrX_9575001	RAL-913
4959	chrX	10138173	10138242	chrX	10145727	10145796	412	30	7554	5.5	5.0	5.2	4.8	7623	chrX	10138173	intron,intron	RhoU +,CR44894 -	chrX	10141984	intron,intron	RhoU +,CR44894 -	chrX	10145796	intron,intron	RhoU +,CR44894 -	chrX_30_10140001	chrX_10140001	RAL-913
4964	chrX	10267307	10267326	chrX	10276507	10276525	roo	6	9200	0.0	18.0	9.0	0.6	9218	chrX	10267307	3` UTR	alpha-Man-I -	chrX	10271916	intron	alpha-Man-I -	chrX	10276525	3` UTR	alpha-Man-I -	chrX_6_10270001	chrX_10270001	RAL-913
4966	chrX	10348752	10348813	chrX	10356367	10356428	springer	21	7615	11.0	9.0	10.0	1.9	7676	chrX	10348752	intergenic	snoRNA:U3:9B +	chrX	10352590	intergenic	not near genes	chrX	10356428	intergenic	l(1)G0289 -	chrX_21_10350001	chrX_10350001	RAL-913
4970	chrX	10550818	10550882	chrX	10552335	10552392	hobo	23	1515	6.5	7.5	7.0	2.9	1574	chrX	10550818	intron	spri -	chrX	10551605	intron	spri -	chrX	10552392	intron	spri -	chrX_23_10550001	chrX_10550001	RAL-913
4971	chrX	10686010	10686076	chrX	10691197	10691263	roo	18	5187	8.0	8.5	8.2	2.0	5253	chrX	10686010	intron	X11Lbeta +	chrX	10688636	intron	X11Lbeta +	chrX	10691263	intron	X11Lbeta +	chrX_18_10685001	chrX_10685001	RAL-913
4980	chrX	11095956	11096020	chrX	11103108	11103172	HMS-Beagle	32	7152	9.0	11.0	10.0	2.9	7216	chrX	11095956	intergenic	not near genes	chrX	11099564	intergenic	not near genes	chrX	11103172	intron	CG42249 +	chrX_32_11095001	chrX_11095001	RAL-913
4985	chrX	11184198	11184257	chrX	11189327	11189386	flea	20	5128	7.0	8.5	7.8	2.3	5188	chrX	11184198	intergenic	not near genes	chrX	11186792	intergenic	not near genes	chrX	11189386	intergenic	not near genes	chrX_20_11185001	chrX_11185001	RAL-913
4993	chrX	11312030	11312081	chrX	11319413	11319479	Stalker2	19	7391	6.5	10.5	8.5	2.0	7449	chrX	11312030	intergenic	not near genes	chrX	11315754	intergenic	not near genes	chrX	11319479	intergenic	not near genes	chrX_19_11315001	chrX_11315001	RAL-913
4996	chrX	11535001	11535045	chrX	11541520	11541565	Burdock	16	6519	8.5	11.0	9.8	1.5	6564	chrX	11535001	intron	Drak +	chrX	11538283	intron	Drak +	chrX	11541565	intron	Drak +	chrX_16_11535001	chrX_11535001	RAL-913
4997	chrX	11633374	11633436	chrX	11640478	11640539	297	20	7104	12.0	9.0	10.5	1.7	7165	chrX	11633374	intron	Ptp10D +	chrX	11636956	intron	Ptp10D +	chrX	11640539	intron	Ptp10D +	chrX_20_11635001	chrX_11635001	RAL-913
4998	chrX	11645078	11645117	chrX	11648297	11648336	NOF	18	3219	8.5	9.5	9.0	1.8	3258	chrX	11645078	intron	Ptp10D +	chrX	11646707	intron	Ptp10D +	chrX	11648336	intron	Ptp10D +	chrX_18_11645001	chrX_11645001	RAL-913
5011	chrX	12168100	12168141	chrX	12173592	12173618	I-element	8	5488	10.5	4.5	7.5	0.9	5518	chrX	12168100	intron	Ten-a +	chrX	12170859	intron	Ten-a +	chrX	12173618	intron	Ten-a +	chrX_8_12170001	chrX_12170001	RAL-913
5016	chrX	12381808	12381895	chrX	12385771	12385847	flea	18	3962	0.0	8.0	4.0	3.6	4039	chrX	12381808	intergenic	not near genes	chrX	12383828	intergenic	not near genes	chrX	12385847	intergenic	not near genes	chrX_18_12380001	chrX_12380001	RAL-913
5032	chrX	12930546	12930605	chrX	12937712	12937736	HMS-Beagle	19	7164	8.0	13.0	10.5	1.7	7190	chrX	12930546	intron	fne +	chrX	12934141	intron	fne +	chrX	12937736	intron	fne +	chrX_19_12930001	chrX_12930001	RAL-913
5049	chrX	13401443	13401511	chrX	13401845	13401913	jockey	26	402	8.0	7.0	7.5	3.1	470	chrX	13401443	intergenic	CG1673 +,CG12725 -	chrX	13401678	intergenic	CG12725 -,CG1673 +	chrX	13401913	3` UTR	CG12725 -	chrX_26_13400001	chrX_13400001	RAL-913
5050	chrX	13429410	13429485	chrX	13430609	13430672	jockey	13	1198	0.0	7.0	3.5	2.9	1262	chrX	13429410	intergenic	not near genes	chrX	13430041	intergenic	not near genes	chrX	13430672	intergenic	not near genes	chrX_13_13430001	chrX_13430001	RAL-913
5051	chrX	13463602	13463667	chrX	13469229	13469294	mdg3	21	5626	7.5	12.0	9.8	1.9	5692	chrX	13463602	intron	Neto +	chrX	13466448	intron	Neto +	chrX	13469294	intron	Neto +	chrX_21_13465001	chrX_13465001	RAL-913
5057	chrX	13937947	13938008	chrX	13941268	13941329	I-element	13	3320	4.0	11.0	7.5	1.5	3382	chrX	13937947	intron	mamo -	chrX	13939638	intron	mamo -	chrX	13941329	intron	mamo -	chrX_13_13935001	chrX_13935001	RAL-913
5058	chrX	14030700	14030723	chrX	14035337	14035360	copia	7	4637	15.0	9.5	12.2	0.5	4660	chrX	14030700	intergenic	not near genes	chrX	14033030	intergenic	not near genes	chrX	14035360	intergenic	not near genes	chrX_7_14030001	chrX_14030001	RAL-913
5060	chrX	14104983	14105048	chrX	14114184	14114249	roo	26	9199	5.0	10.5	7.8	3.0	9266	chrX	14104983	intergenic	not near genes	chrX	14109616	intergenic	not near genes	chrX	14114249	5` UTR	CR44657 +	chrX_26_14105001	chrX_14105001	RAL-913
5061	chrX	14157551	14157559	chrX	14163258	14163266	297	6	5707	16.5	10.0	13.2	0.4	5715	chrX	14157551	intergenic	not near genes	chrX	14160408	intergenic	not near genes	chrX	14163266	intergenic	not near genes	chrX_6_14160001	chrX_14160001	RAL-913
5062	chrX	14157560	14157617	chrX	14163257	14163324	297	10	5706	8.0	9.5	8.8	1.0	5764	chrX	14157560	intergenic	not near genes	chrX	14160442	intergenic	not near genes	chrX	14163324	intergenic	not near genes	chrX_10_14160001	chrX_14160001	RAL-913
5066	chrX	14304044	14304061	chrX	14310312	14310329	17.6	5	6268	12.0	10.0	11.0	0.4	6285	chrX	14304044	intergenic	not near genes	chrX	14307186	intergenic	not near genes	chrX	14310329	intergenic	not near genes	chrX_5_14305001	chrX_14305001	RAL-913
5070	chrX	14416268	14416320	chrX	14421086	14421138	F-element	20	4816	9.5	11.5	10.5	1.7	4870	chrX	14416268	intron	dpr8 +	chrX	14418703	intron	dpr8 +	chrX	14421138	intron	dpr8 +	chrX_20_14415001	chrX_14415001	RAL-913
5073	chrX	14636420	14636483	chrX	14641911	14641969	I-element	11	5489	6.5	5.5	6.0	1.6	5549	chrX	14636420	intron	NetA -	chrX	14639194	intron	NetA -	chrX	14641969	intron	NetA -	chrX_11_14635001	chrX_14635001	RAL-913
5075	chrX	14777992	14778045	chrX	14782839	14782892	Doc	25	4847	10.0	16.0	13.0	1.8	4900	chrX	14777992	intergenic	CG5347 +	chrX	14780442	intergenic	not near genes	chrX	14782892	intergenic	Ag5r2 -	chrX_25_14780001	chrX_14780001	RAL-913
5077	chrX	14818717	14818790	chrX	14823971	14824039	copia	25	5250	9.0	9.0	9.0	2.5	5322	chrX	14818717	intron	rut -	chrX	14821378	intron	rut -	chrX	14824039	intron	rut -	chrX_25_14820001	chrX_14820001	RAL-913
5080	chrX	14936819	14936882	chrX	14946126	14946189	roo	25	9307	6.0	6.0	6.0	3.6	9370	chrX	14936819	intron	pdgy -	chrX	14941504	intron	pdgy -	chrX	14946189	intron	pdgy -	chrX_25_14940001	chrX_14940001	RAL-913
5085	chrX	15034057	15034088	chrX	15041640	15041671	rover	12	7580	8.5	11.5	10.0	1.1	7614	chrX	15034057	intron,3` UTR	hiw -,be +	chrX	15037864	intron,intron	hiw -,be +	chrX	15041671	intron,3` UTR	hiw -,be +	chrX_12_15035001	chrX_15035001	RAL-913
5094	chrX	15273663	15273680	chrX	15274880	15274880	1360	5	1211	17.5	6.5	12.0	0.4	1217	chrX	15273663	intergenic	not near genes	chrX	15274272	intergenic	not near genes	chrX	15274880	intergenic	not near genes	chrX_5_15270001	chrX_15270001	RAL-913
5095	chrX	15273696	15273730	chrX	15274870	15274947	1360	15	1206	6.5	5.5	6.0	2.1	1251	chrX	15273696	intergenic	not near genes	chrX	15274322	intergenic	not near genes	chrX	15274947	intergenic	not near genes	chrX_15_15270001	chrX_15270001	RAL-913
5097	chrX	15326688	15326716	chrX	15326936	15326964	I-element	9	247	0.0	8.0	4.0	1.8	276	chrX	15326688	3` UTR	Top1 +	chrX	15326826	3` UTR	Top1 +	chrX	15326964	3` UTR	Top1 +	chrX_9_15325001	chrX_15325001	RAL-913
5099	chrX	15413013	15413026	chrX	15417365	15417378	Juan	7	4351	15.0	12.0	13.5	0.5	4365	chrX	15413013	intron	Cngl -	chrX	15415196	intron	Cngl -	chrX	15417378	intron	Cngl -	chrX_7_15415001	chrX_15415001	RAL-913
5100	chrX	15413029	15413072	chrX	15417356	15417424	Juan	17	4349	7.0	10.5	8.8	1.7	4395	chrX	15413029	intron	Cngl -	chrX	15415226	intron	Cngl -	chrX	15417424	intron	Cngl -	chrX_17_15415001	chrX_15415001	RAL-913
5101	chrX	15421870	15421943	chrX	15423431	15423504	pogo	18	1560	5.0	7.5	6.2	2.5	1634	chrX	15421870	intron	Cngl -	chrX	15422687	intron	Cngl -	chrX	15423504	intron	Cngl -	chrX_18_15420001	chrX_15420001	RAL-913
5102	chrX	15435687	15435695	chrX	15436170	15436178	rover	6	483	0.0	18.5	9.2	0.6	491	chrX	15435687	intron	Cngl -	chrX	15435932	intron	Cngl -	chrX	15436178	intron	Cngl -	chrX_6_15435001	chrX_15435001	RAL-913
5116	chrX	16222738	16222754	chrX	16231138	16231154	roo	5	8400	14.0	6.5	10.2	0.4	8416	chrX	16222738	intergenic	not near genes	chrX	16226946	intergenic	not near genes	chrX	16231154	intergenic	not near genes	chrX_5_16225001	chrX_16225001	RAL-913
5117	chrX	16222758	16222802	chrX	16231133	16231202	roo	17	8397	8.0	5.5	6.8	2.2	8444	chrX	16222758	intergenic	not near genes	chrX	16226980	intergenic	not near genes	chrX	16231202	intergenic	not near genes	chrX_17_16225001	chrX_16225001	RAL-913
5119	chrX	16340618	16340690	chrX	16349823	16349897	roo	23	9205	0.5	6.5	3.5	5.1	9279	chrX	16340618	3` UTR	Dsp1 +	chrX	16345258	intergenic	not near genes	chrX	16349897	intergenic	sl +	chrX_23_16345001	chrX_16345001	RAL-913
5121	chrX	16492604	16492670	chrX	16498231	16498297	mdg3	28	5626	11.0	10.5	10.8	2.4	5693	chrX	16492604	intron	para -	chrX	16495450	intron	para -	chrX	16498297	exon	para -	chrX_28_16495001	chrX_16495001	RAL-913
5132	chrX	16935965	16936021	chrX	16936433	16936489	jockey	13	466	5.0	9.5	7.2	1.6	524	chrX	16935965	intron	CG4928 +	chrX	16936227	intron	CG4928 +	chrX	16936489	intron	CG4928 +	chrX_13_16935001	chrX_16935001	RAL-913
5137	chrX	17057890	17057957	chrX	17058181	17058248	pogo	19	291	9.0	10.5	9.8	1.8	358	chrX	17057890	intron	CG45002 -	chrX	17058069	intron	CG45002 -	chrX	17058248	intron	CG45002 -	chrX_19_17055001	chrX_17055001	RAL-913
5143	chrX	17195171	17195232	chrX	17200300	17200331	flea	24	5132	4.5	10.5	7.5	2.8	5160	chrX	17195171	3` UTR	baz +	chrX	17197751	3` UTR	baz +	chrX	17200331	3` UTR	baz +	chrX_24_17195001	chrX_17195001	RAL-913
5153	chrX	17431321	17431393	chrX	17431697	17431743	jockey	6	382	4.0	7.5	5.8	0.9	422	chrX	17431321	intron	CG12994 -	chrX	17431532	intron	CG12994 -	chrX	17431743	intron	CG12994 -	chrX_6_17430001	chrX_17430001	RAL-913
5159	chrX	17556901	17556973	chrX	17557450	17557519	mdg1	4	541	5.0	7.0	6.0	0.6	618	chrX	17556901	intron	CG43658 -	chrX	17557210	intron	CG43658 -	chrX	17557519	intron	CG43658 -	chrX_4_17555001	chrX_17555001	RAL-913
5168	chrX	17792922	17792973	chrX	17796254	17796300	flea	17	3341	4.0	7.0	5.5	2.6	3378	chrX	17792922	intron	OdsH +	chrX	17794611	intron	OdsH +	chrX	17796300	intron	OdsH +	chrX_17_17790001	chrX_17790001	RAL-913
5179	chrX	18194026	18194097	chrX	18194611	18194681	BS	22	585	6.5	12.0	9.2	2.2	655	chrX	18194026	intron	Frq2 +	chrX	18194354	intron	Frq2 +	chrX	18194681	intron	Frq2 +	chrX_22_18190001	chrX_18190001	RAL-913
5184	chrX	18429459	18429512	chrX	18434820	18434873	Transpac	27	5361	10.5	9.0	9.8	2.5	5414	chrX	18429459	intergenic	not near genes	chrX	18432166	intergenic	not near genes	chrX	18434873	intergenic	not near genes	chrX_27_18430001	chrX_18430001	RAL-913
5198	chrX	18957025	18957093	chrX	18965738	18965806	roo	13	8713	8.5	8.5	8.5	1.4	8781	chrX	18957025	intron	CG43759 +	chrX	18961416	intron	CG43759 +	chrX	18965806	intron	CG43759 +	chrX_13_18960001	chrX_18960001	RAL-913
5202	chrX	19060368	19060425	chrX	19065202	19065259	Doc	13	4834	11.5	12.0	11.8	1.0	4891	chrX	19060368	intron	CG14190 +	chrX	19062814	intron	CG14190 +	chrX	19065259	intron	CG14190 +	chrX_13_19060001	chrX_19060001	RAL-913
5207	chrX	19136510	19136577	chrX	19143480	19143506	412	17	6966	9.0	10.0	9.5	1.6	6996	chrX	19136510	intergenic	not near genes	chrX	19140008	intergenic	not near genes	chrX	19143506	3` UTR	RhoGAP18B -	chrX_17_19140001	chrX_19140001	RAL-913
5211	chrX	19380116	19380181	chrX	19380407	19380472	pogo	28	291	8.0	11.0	9.5	2.7	356	chrX	19380116	intron	kek5 +	chrX	19380294	intron	kek5 +	chrX	19380472	intron	kek5 +	chrX_28_19380001	chrX_19380001	RAL-913
5212	chrX	19437228	19437280	chrX	19444799	19444849	Idefix	13	7565	7.5	1.0	4.2	2.5	7621	chrX	19437228	intron	kek5 +	chrX	19441038	intron	kek5 +	chrX	19444849	intron	kek5 +	chrX_13_19440001	chrX_19440001	RAL-913
5215	chrX	19472081	19472147	chrX	19472702	19472767	jockey	19	616	10.5	5.5	8.0	2.1	686	chrX	19472081	intergenic	kek5 +	chrX	19472424	intergenic	not near genes	chrX	19472767	intergenic	not near genes	chrX_19_19470001	chrX_19470001	RAL-913
5218	chrX	19710027	19710093	chrX	19711863	19711929	S-element	25	1834	6.5	9.5	8.0	2.8	1902	chrX	19710027	intron	meso18E -	chrX	19710978	intron	meso18E -	chrX	19711929	intron	meso18E -	chrX_25_19710001	chrX_19710001	RAL-913
5220	chrX	19797305	19797335	chrX	19804668	19804698	Stalker4	11	7363	15.5	5.5	10.5	1.0	7393	chrX	19797305	intergenic	not near genes	chrX	19801002	intergenic	not near genes	chrX	19804698	intergenic	not near genes	chrX_11_19800001	chrX_19800001	RAL-913
5233	chrX	20144443	20144453	chrX	21085288	21085298	INE-1	4	940845	12.0	36.5	24.2	0.2	940855	chrX	20144443	intergenic	not near genes	chrX	20614870	intron	RunxA -	chrX	21085298	intergenic	not near genes	chrX_4_20610001	chrX_20610001	RAL-913
5256	chrX	20504086	20504146	chrX	20505657	20505717	transib2	20	1570	12.0	7.0	9.5	1.9	1631	chrX	20504086	intron	RhoGAP19D -	chrX	20504902	intron	RhoGAP19D -	chrX	20505717	intron	RhoGAP19D -	chrX_20_20500001	chrX_20500001	RAL-913
5267	chrX	20836685	20836750	chrX	20844337	20844402	roo	27	7652	5.5	7.5	6.5	3.6	7717	chrX	20836685	intron	shakB -	chrX	20840544	intron	shakB -	chrX	20844402	intron	shakB -	chrX_27_20840001	chrX_20840001	RAL-913
5268	chrX	20940677	20940728	chrX	20942196	20942233	hobo	17	1518	10.0	2.5	6.2	2.4	1556	chrX	20940677	intergenic	not near genes	chrX	20941455	intergenic	not near genes	chrX	20942233	intergenic	not near genes	chrX_17_20940001	chrX_20940001	RAL-913
5269	chrX	20956943	20957003	chrX	20962435	20962495	I-element	19	5492	10.5	11.5	11.0	1.6	5552	chrX	20956943	intergenic	not near genes	chrX	20959719	intergenic	not near genes	chrX	20962495	intergenic	Ser6 -	chrX_19_20955001	chrX_20955001	RAL-913
5277	chrX	21086090	21086152	chrX	21087169	21087231	jockey	19	1079	8.5	11.5	10.0	1.7	1141	chrX	21086090	intergenic	not near genes	chrX	21086660	intergenic	not near genes	chrX	21087231	intergenic	not near genes	chrX_19_21085001	chrX_21085001	RAL-913
5292	chrX	21458645	21458710	chrX	21464131	21464196	Ivk	12	5486	12.0	3.5	7.8	1.4	5551	chrX	21458645	intergenic	not near genes	chrX	21461420	intergenic	not near genes	chrX	21464196	intergenic	not near genes	chrX_12_21460001	chrX_21460001	RAL-913
5293	chrX	21474368	21474432	chrX	21474777	21474848	1731	16	414	6.0	8.5	7.2	2.0	480	chrX	21474368	intergenic	not near genes	chrX	21474608	intergenic	not near genes	chrX	21474848	intergenic	not near genes	chrX_16_21470001	chrX_21470001	RAL-913
5298	chrX	21595553	21595568	chrX	21598657	21598672	micropia	5	3104	14.0	11.5	12.8	0.4	3119	chrX	21595553	intergenic	not near genes	chrX	21597112	intergenic	not near genes	chrX	21598672	intergenic	not near genes	chrX_5_21595001	chrX_21595001	RAL-913
5303	chrX	22697467	22697512	chrX	22701814	22701859	Juan	21	4347	9.0	14.0	11.5	1.7	4392	chrX	22697467	intron	CR44997 +	chrX	22699663	intron	CR44997 +	chrX	22701859	intron	CR44997 +	chrX_21_22695001	chrX_22695001	RAL-913
5305	chrX	22771463	22771524	chrX	22774804	22774865	297	18	3339	8.0	10.0	9.0	1.8	3402	chrX	22771463	intron	CR44997 +	chrX	22773164	intron	CR44997 +	chrX	22774865	intron	CR44997 +	chrX_18_22770001	chrX_22770001	RAL-913
5309	chrX	22811950	22812004	chrX	22816772	22816826	F-element	19	4821	7.0	8.0	7.5	2.2	4876	chrX	22811950	intergenic	CG12446 -	chrX	22814388	intergenic	not near genes	chrX	22816826	intergenic	not near genes	chrX_19_22810001	chrX_22810001	RAL-913
5315	chrX	22967345	22967364	chrX	23154546	23154560	diver	4	187200	16.0	29.0	22.5	0.2	187215	chrX	22967345	intergenic	not near genes	chrX	23060952	intergenic	not near genes	chrX	23154560	intergenic	not near genes	chrX_4_23060001	chrX_23060001	RAL-913
5316	chrX	22987065	22987123	chrX	22989774	22989832	Burdock	20	2706	5.5	10.0	7.8	2.3	2767	chrX	22987065	intron,intron	stnA -,stnB -	chrX	22988448	intron,intron	stnA -,stnB -	chrX	22989832	intron,intron	stnA -,stnB -	chrX_20_22985001	chrX_22985001	RAL-913
5317	chrX	22996267	22996329	chrX	23003551	23003613	roo	30	7283	5.0	6.0	5.5	4.6	7346	chrX	22996267	intron,intron	stnA -,stnB -	chrX	22999940	intron,intron	stnA -,stnB -	chrX	23003613	intron,intron	stnA -,stnB -	chrX_30_22995001	chrX_22995001	RAL-913