SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
8	chr2L	347869	347918	chr2L	355389	355431	blood	6	7516	4.5	4.5	4.5	1.1	7562	chr2L	347869	3` UTR	Plc21C +	chr2L	351650	intron	Plc21C +	chr2L	355431	3` UTR	Plc21C +	chr2L_6_350001	chr2L_350001	RAL-911
15	chr2L	996712	996746	chr2L	1005827	1005854	roo	4	9113	0.0	3.0	1.5	1.6	9142	chr2L	996712	intergenic	not near genes	chr2L	1001283	intergenic	not near genes	chr2L	1005854	intergenic	not near genes	chr2L_4_1000001	chr2L_1000001	RAL-911
19	chr2L	1220112	1220158	chr2L	1227598	1227644	blood	8	7484	4.0	2.5	3.2	1.9	7532	chr2L	1220112	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227644	intron	CG42329 +	chr2L_8_1220001	chr2L_1220001	RAL-911
20	chr2L	1301751	1301785	chr2L	1302298	1302362	gypsy	4	569	0.0	0.0	0.0	4.0	611	chr2L	1301751	intergenic	not near genes	chr2L	1302056	intergenic	not near genes	chr2L	1302362	intergenic	not near genes	chr2L_4_1300001	chr2L_1300001	RAL-911
23	chr2L	1570673	1570720	chr2L	1573565	1573608	F-element	11	2891	4.0	0.5	2.2	3.4	2935	chr2L	1570673	intron	haf +	chr2L	1572140	intron	haf +	chr2L	1573608	intron	haf +	chr2L_11_1570001	chr2L_1570001	RAL-911
28	chr2L	1678958	1679003	chr2L	1686443	1686487	blood	11	7485	3.5	4.0	3.8	2.3	7529	chr2L	1678958	intron	chinmo +	chr2L	1682722	intron	chinmo +	chr2L	1686487	intron	chinmo +	chr2L_11_1680001	chr2L_1680001	RAL-911
45	chr2L	2772600	2772611	chr2L	2779197	2779213	297	4	6600	5.0	4.5	4.8	0.7	6613	chr2L	2772600	3` UTR	Syt1 -	chr2L	2775906	intron	Syt1 -	chr2L	2779213	3` UTR	Syt1 -	chr2L_4_2775001	chr2L_2775001	RAL-911
48	chr2L	3073020	3073060	chr2L	3078243	3078283	copia	12	5221	2.0	7.5	4.8	2.1	5263	chr2L	3073020	intron	toc -	chr2L	3075652	intron	toc -	chr2L	3078283	intron	toc -	chr2L_12_3075001	chr2L_3075001	RAL-911
51	chr2L	3202718	3202770	chr2L	3210167	3210219	mdg1	13	7449	1.5	0.5	1.0	6.5	7501	chr2L	3202718	intergenic	not near genes	chr2L	3206468	intergenic	not near genes	chr2L	3210219	intergenic	CR45336 +	chr2L_13_3205001	chr2L_3205001	RAL-911
52	chr2L	3251479	3251492	chr2L	3259064	3259076	springer	4	7583	8.0	1.5	4.8	0.7	7597	chr2L	3251479	intergenic	not near genes	chr2L	3255278	intergenic	not near genes	chr2L	3259076	intergenic	not near genes	chr2L_4_3255001	chr2L_3255001	RAL-911
57	chr2L	3388604	3388618	chr2L	3388848	3388879	pogo	6	253	1.5	3.0	2.2	1.9	275	chr2L	3388604	intergenic	CG42460 -	chr2L	3388742	intergenic	CG42460 -	chr2L	3388879	intergenic	CG42460 -,CR44791 +	chr2L_6_3385001	chr2L_3385001	RAL-911
61	chr2L	3649795	3649810	chr2L	3654988	3655032	copia	5	5212	1.0	3.0	2.0	1.7	5237	chr2L	3649795	intron	for -	chr2L	3652414	intron	for -	chr2L	3655032	intron	for -	chr2L_5_3650001	chr2L_3650001	RAL-911
69	chr2L	4066045	4066060	chr2L	4068869	4068905	Juan	4	2839	1.5	0.5	1.0	2.0	2860	chr2L	4066045	intron	ed +	chr2L	4067475	intron	ed +	chr2L	4068905	intron	ed +	chr2L_4_4065001	chr2L_4065001	RAL-911
76	chr2L	4601685	4601705	chr2L	4609145	4609151	mdg1	4	7456	1.0	2.0	1.5	1.6	7466	chr2L	4601685	intron	dp -	chr2L	4605418	intron	dp -	chr2L	4609151	intron	dp -	chr2L_4_4605001	chr2L_4605001	RAL-911
77	chr2L	4601715	4601730	chr2L	4609144	4609163	mdg1	6	7450	1.0	2.0	1.5	2.4	7448	chr2L	4601715	intron	dp -	chr2L	4605439	intron	dp -	chr2L	4609163	intron	dp -	chr2L_6_4605001	chr2L_4605001	RAL-911
82	chr2L	4918156	4918194	chr2L	4923249	4923287	jockey	11	5093	5.5	8.0	6.8	1.4	5131	chr2L	4918156	intron	hoe1 -	chr2L	4920722	intron	hoe1 -	chr2L	4923287	intron	hoe1 -	chr2L_11_4920001	chr2L_4920001	RAL-911
88	chr2L	5342752	5342799	chr2L	5345152	5345199	Doc	7	2395	1.5	6.5	4.0	1.4	2447	chr2L	5342752	intergenic	not near genes	chr2L	5343976	intergenic	not near genes	chr2L	5345199	intergenic	not near genes	chr2L_7_5340001	chr2L_5340001	RAL-911
98	chr2L	5827716	5827729	chr2L	5836718	5836743	roo	9	9010	3.5	2.5	3.0	2.2	9027	chr2L	5827716	intron	TrissinR +	chr2L	5832230	intron	TrissinR +	chr2L	5836743	intron	TrissinR +	chr2L_9_5830001	chr2L_5830001	RAL-911
102	chr2L	6363145	6363175	chr2L	6366070	6366116	Burdock	6	2931	3.5	2.5	3.0	1.5	2971	chr2L	6363145	intergenic	not near genes	chr2L	6364630	intergenic	not near genes	chr2L	6366116	intergenic	not near genes	chr2L_6_6360001	chr2L_6360001	RAL-911
103	chr2L	6426836	6426885	chr2L	6445116	6445161	roo	7	18275	3.5	3.0	3.2	1.7	18325	chr2L	6426836	3` UTR	CG9527 -	chr2L	6435998	intron	CG9527 -	chr2L	6445161	exon	CG9527 -	chr2L_7_6435001	chr2L_6435001	RAL-911
118	chr2L	7343339	7343351	chr2L	7350439	7350486	roo	4	7124	2.0	1.5	1.8	1.4	7147	chr2L	7343339	intron	Wnt6 +	chr2L	7346912	intron	Wnt6 +	chr2L	7350486	intron	Wnt6 +	chr2L_4_7345001	chr2L_7345001	RAL-911
128	chr2L	7959030	7959057	chr2L	7960459	7960487	pogo	4	1430	5.0	5.5	5.2	0.6	1457	chr2L	7959030	intron	Snoo -	chr2L	7959758	intron	Snoo -	chr2L	7960487	intron	Snoo -	chr2L_4_7955001	chr2L_7955001	RAL-911
129	chr2L	7977074	7977103	chr2L	7984052	7984080	297	5	6973	2.0	0.5	1.2	2.3	7006	chr2L	7977074	intron	Snoo -	chr2L	7980577	intron	Snoo -	chr2L	7984080	intron,5` UTR	Snoo -,CG7231 +	chr2L_5_7980001	chr2L_7980001	RAL-911
131	chr2L	8018825	8018828	chr2L	8023629	8023632	Doc	4	4804	0.0	7.0	3.5	0.9	4807	chr2L	8018825	intron	Tg +	chr2L	8021228	intron	Tg +	chr2L	8023632	intron	Tg +	chr2L_4_8020001	chr2L_8020001	RAL-911
136	chr2L	8452424	8452453	chr2L	8461602	8461644	roo	8	9189	3.5	8.5	6.0	1.1	9220	chr2L	8452424	intron	fu12 -	chr2L	8457034	intron	fu12 -	chr2L	8461644	intron	fu12 -	chr2L_8_8455001	chr2L_8455001	RAL-911
138	chr2L	8594459	8594484	chr2L	8601524	8601541	297	7	7070	6.0	2.5	4.2	1.3	7082	chr2L	8594459	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598000	intron	Sema-1a +	chr2L	8601541	intron	Sema-1a +	chr2L_7_8595001	chr2L_8595001	RAL-911
143	chr2L	8723102	8723147	chr2L	8731499	8731544	Tirant	9	8392	1.5	3.0	2.2	2.8	8442	chr2L	8723102	intron	raw -	chr2L	8727323	intron	raw -	chr2L	8731544	intron	raw -	chr2L_9_8725001	chr2L_8725001	RAL-911
151	chr2L	9000266	9000311	chr2L	9007787	9007839	roo	8	7521	3.5	0.0	1.8	2.9	7573	chr2L	9000266	intergenic	Try29F +	chr2L	9004052	intergenic	not near genes	chr2L	9007839	intergenic	not near genes	chr2L_8_9000001	chr2L_9000001	RAL-911
165	chr2L	9393488	9393522	chr2L	9396474	9396481	jockey	8	2982	4.5	3.5	4.0	1.6	2993	chr2L	9393488	intron	Shawl -	chr2L	9394984	intron	Shawl -	chr2L	9396481	intron	Shawl -	chr2L_8_9390001	chr2L_9390001	RAL-911
172	chr2L	10156350	10156354	chr2L	10163799	10163817	blood	4	7459	1.5	3.5	2.5	1.1	7467	chr2L	10156350	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160084	intron	CG44153 -	chr2L	10163817	intron	CG44153 -	chr2L_4_10160001	chr2L_10160001	RAL-911
181	chr2L	10592826	10592860	chr2L	10600507	10600534	opus	4	7679	1.0	2.0	1.5	1.6	7708	chr2L	10592826	intron	Trim9 +	chr2L	10596680	intron	Trim9 +	chr2L	10600534	intron	Trim9 +	chr2L_4_10595001	chr2L_10595001	RAL-911
209	chr2L	11540582	11540614	chr2L	11548004	11548033	Tabor	11	7421	4.5	6.5	5.5	1.7	7451	chr2L	11540582	intergenic	not near genes	chr2L	11544308	intergenic	not near genes	chr2L	11548033	intergenic	not near genes	chr2L_11_11540001	chr2L_11540001	RAL-911
211	chr2L	11563639	11563662	chr2L	11568845	11568886	copia	6	5219	1.0	3.0	2.0	2.0	5247	chr2L	11563639	intergenic	not near genes	chr2L	11566262	intergenic	not near genes	chr2L	11568886	intergenic	not near genes	chr2L_6_11565001	chr2L_11565001	RAL-911
212	chr2L	11713501	11713537	chr2L	11720989	11721015	blood	9	7478	2.5	4.5	3.5	2.0	7514	chr2L	11713501	intergenic	not near genes	chr2L	11717258	intergenic	not near genes	chr2L	11721015	intergenic	CR44143 +	chr2L_9_11715001	chr2L_11715001	RAL-911
218	chr2L	12067319	12067354	chr2L	12074391	12074426	297	18	7071	3.0	3.5	3.2	4.3	7107	chr2L	12067319	intergenic	not near genes	chr2L	12070872	intergenic	not near genes	chr2L	12074426	intergenic	not near genes	chr2L_18_12070001	chr2L_12070001	RAL-911
231	chr2L	12728899	12728948	chr2L	12729162	12729211	pogo	7	263	5.0	2.0	3.5	1.6	312	chr2L	12728899	intron	MRP +	chr2L	12729055	intron	MRP +	chr2L	12729211	exon	MRP +	chr2L_7_12725001	chr2L_12725001	RAL-911
232	chr2L	12731044	12731089	chr2L	12735831	12735866	F-element	7	4785	3.0	2.0	2.5	2.0	4822	chr2L	12731044	intron	MRP +	chr2L	12733455	intron	MRP +	chr2L	12735866	intron	MRP +	chr2L_7_12730001	chr2L_12730001	RAL-911
233	chr2L	12739165	12739198	chr2L	12743961	12743999	Doc	9	4797	3.0	2.5	2.8	2.4	4834	chr2L	12739165	exon	MRP +	chr2L	12741582	intron	MRP +	chr2L	12743999	exon	MRP +	chr2L_9_12740001	chr2L_12740001	RAL-911
234	chr2L	12763812	12763865	chr2L	12764037	12764085	BS	5	225	0.0	0.0	0.0	5.0	273	chr2L	12763812	intergenic	not near genes	chr2L	12763948	intergenic	not near genes	chr2L	12764085	intergenic	not near genes	chr2L_5_12760001	chr2L_12760001	RAL-911
235	chr2L	12781782	12781797	chr2L	12789245	12789260	Quasimodo	5	7462	5.5	5.0	5.2	0.8	7478	chr2L	12781782	intergenic	not near genes	chr2L	12785521	intergenic	not near genes	chr2L	12789260	intergenic	not near genes	chr2L_5_12785001	chr2L_12785001	RAL-911
236	chr2L	12791592	12791624	chr2L	12795287	12795302	F-element	7	3691	2.0	5.0	3.5	1.6	3710	chr2L	12791592	intergenic	not near genes	chr2L	12793447	intergenic	not near genes	chr2L	12795302	intergenic	not near genes	chr2L_7_12790001	chr2L_12790001	RAL-911
237	chr2L	12791625	12791630	chr2L	12795284	12795325	F-element	4	3686	2.0	4.5	3.2	1.0	3700	chr2L	12791625	intergenic	not near genes	chr2L	12793475	intergenic	not near genes	chr2L	12795325	intergenic	not near genes	chr2L_4_12790001	chr2L_12790001	RAL-911
239	chr2L	12861677	12861721	chr2L	12863164	12863208	hobo	7	1482	2.0	1.0	1.5	2.8	1531	chr2L	12861677	intergenic	not near genes	chr2L	12862442	intergenic	not near genes	chr2L	12863208	intergenic	not near genes	chr2L_7_12860001	chr2L_12860001	RAL-911
242	chr2L	13405640	13405653	chr2L	13410456	13410469	Doc	4	4816	1.0	3.0	2.0	1.3	4829	chr2L	13405640	exon	CG7110 +	chr2L	13408054	intron	CG7110 +	chr2L	13410469	intron	CG7110 +	chr2L_4_13405001	chr2L_13405001	RAL-911
243	chr2L	13405657	13405675	chr2L	13410455	13410469	Doc	4	4803	0.5	3.0	1.8	1.4	4812	chr2L	13405657	exon	CG7110 +	chr2L	13408063	intron	CG7110 +	chr2L	13410469	intron	CG7110 +	chr2L_4_13405001	chr2L_13405001	RAL-911
244	chr2L	13449473	13449485	chr2L	13456922	13456941	Quasimodo	6	7451	0.5	6.0	3.2	1.4	7468	chr2L	13449473	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453207	intron	CG42784 +	chr2L	13456941	intron	CG42784 +	chr2L_6_13450001	chr2L_13450001	RAL-911
245	chr2L	13481432	13481459	chr2L	13482056	13482086	jockey	5	625	6.0	6.5	6.2	0.7	654	chr2L	13481432	intron	CG42784 +	chr2L	13481759	intron	CG42784 +	chr2L	13482086	intron	CG42784 +	chr2L_5_13480001	chr2L_13480001	RAL-911
247	chr2L	13560384	13560421	chr2L	13565225	13565232	F-element	12	4836	5.0	2.0	3.5	2.7	4848	chr2L	13560384	intron	kuz +	chr2L	13562808	intron	kuz +	chr2L	13565232	intron	kuz +	chr2L_12_13560001	chr2L_13560001	RAL-911
252	chr2L	13853082	13853117	chr2L	13862232	13862256	roo	10	9160	2.0	5.5	3.8	2.1	9174	chr2L	13853082	intron	CenG1A +	chr2L	13857669	intron	CenG1A +	chr2L	13862256	intron	CenG1A +	chr2L_10_13855001	chr2L_13855001	RAL-911
269	chr2L	14889935	14889983	chr2L	14890380	14890428	jockey	7	441	3.0	1.0	2.0	2.3	493	chr2L	14889935	intergenic	not near genes	chr2L	14890182	intergenic	not near genes	chr2L	14890428	intergenic	not near genes	chr2L_7_14890001	chr2L_14890001	RAL-911
272	chr2L	14984386	14984405	chr2L	14991995	14992012	opus	8	7613	3.0	3.5	3.2	1.9	7626	chr2L	14984386	intron	mol -	chr2L	14988199	intron	mol -	chr2L	14992012	intron	mol -	chr2L_8_14985001	chr2L_14985001	RAL-911
284	chr2L	15446046	15446084	chr2L	15453535	15453573	blood	10	7489	2.5	5.0	3.8	2.1	7527	chr2L	15446046	intergenic	not near genes	chr2L	15449810	intergenic	not near genes	chr2L	15453573	intergenic	not near genes	chr2L_10_15445001	chr2L_15445001	RAL-911
293	chr2L	15586393	15586440	chr2L	15593464	15593512	297	13	7072	4.5	2.0	3.2	3.1	7119	chr2L	15586393	intergenic	not near genes	chr2L	15589952	intergenic	not near genes	chr2L	15593512	intergenic	not near genes	chr2L_13_15585001	chr2L_15585001	RAL-911
298	chr2L	15956021	15956040	chr2L	15957508	15957527	hobo	6	1486	3.5	2.5	3.0	1.5	1506	chr2L	15956021	intron	beat-Ib -	chr2L	15956774	intron	beat-Ib -	chr2L	15957527	intron	beat-Ib -	chr2L_6_15955001	chr2L_15955001	RAL-911
301	chr2L	16141165	16141195	chr2L	16146376	16146422	copia	5	5223	2.0	3.5	2.8	1.3	5257	chr2L	16141165	intergenic	not near genes	chr2L	16143794	intergenic	not near genes	chr2L	16146422	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-911
305	chr2L	16511945	16511984	chr2L	16519079	16519118	HMS-Beagle	6	7134	5.0	1.5	3.2	1.4	7173	chr2L	16511945	intron	CG5953 -	chr2L	16515532	intron	CG5953 -	chr2L	16519118	intron	CG5953 -	chr2L_6_16515001	chr2L_16515001	RAL-911
316	chr2L	16958087	16958137	chr2L	16962895	16962920	Doc	5	4803	2.5	4.5	3.5	1.1	4833	chr2L	16958087	intergenic	not near genes	chr2L	16960504	intergenic	not near genes	chr2L	16962920	intergenic	not near genes	chr2L_5_16960001	chr2L_16960001	RAL-911
319	chr2L	17167565	17167596	chr2L	17167812	17167857	pogo	6	258	1.5	2.0	1.8	2.1	292	chr2L	17167565	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167711	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167857	intron,intron	CG34106 +,beat-IIIa +	chr2L_6_17165001	chr2L_17165001	RAL-911
321	chr2L	17199141	17199188	chr2L	17200628	17200670	hobo	5	1484	3.0	3.0	3.0	1.2	1529	chr2L	17199141	intron	beat-IIIc -	chr2L	17199906	intron	beat-IIIc -	chr2L	17200670	intron	beat-IIIc -	chr2L_5_17195001	chr2L_17195001	RAL-911
336	chr2L	17819903	17819950	chr2L	17825126	17825145	copia	4	5215	3.0	1.0	2.0	1.3	5242	chr2L	17819903	intron	CadN2 -	chr2L	17822524	intron	CadN2 -	chr2L	17825145	intron	CadN2 -	chr2L_4_17820001	chr2L_17820001	RAL-911
339	chr2L	17951933	17951978	chr2L	17953420	17953465	hobo	11	1487	0.5	2.5	1.5	4.4	1532	chr2L	17951933	intergenic	CR44398 -,CR44397 -	chr2L	17952699	intergenic	not near genes	chr2L	17953465	intergenic	not near genes	chr2L_11_17950001	chr2L_17950001	RAL-911
340	chr2L	18051854	18051904	chr2L	18061021	18061050	roo	7	9155	4.0	2.5	3.2	1.7	9196	chr2L	18051854	intron	rdo +	chr2L	18056452	intron	rdo +	chr2L	18061050	intron	rdo +	chr2L_7_18055001	chr2L_18055001	RAL-911
345	chr2L	16217660	16217660	chr2L	18331928	18331928	F-element	4	2114268	17.0	11.0	14.0	0.3	2114268	chr2L	16217660	intergenic	not near genes	chr2L	17274794	intergenic	not near genes	chr2L	18331928	intron	Fas3 +	chr2L_4_17270001	chr2L_17270001	RAL-911
346	chr2L	18408027	18408053	chr2L	18412811	18412820	Doc	5	4793	2.0	4.5	3.2	1.2	4793	chr2L	18408027	intergenic	not near genes	chr2L	18410424	intergenic	not near genes	chr2L	18412820	intergenic	not near genes	chr2L_5_18410001	chr2L_18410001	RAL-911
356	chr2L	19147373	19147397	chr2L	19154412	19154452	297	9	7043	3.0	2.0	2.5	2.6	7079	chr2L	19147373	intron	brat +	chr2L	19150912	intron	brat +	chr2L	19154452	intron	brat +	chr2L_9_19150001	chr2L_19150001	RAL-911
360	chr2L	19345012	19345031	chr2L	19357221	19357260	blood	7	12223	0.0	1.0	0.5	4.7	12248	chr2L	19345012	intron	dnt -	chr2L	19351136	intron	dnt -	chr2L	19357260	intron	dnt -	chr2L_7_19350001	chr2L_19350001	RAL-911
373	chr2L	19620080	19620131	chr2L	19621089	19621125	jockey	4	1004	2.5	1.5	2.0	1.3	1045	chr2L	19620080	intron	Lar +	chr2L	19620602	intron	Lar +	chr2L	19621125	intron	Lar +	chr2L_4_19620001	chr2L_19620001	RAL-911
374	chr2L	19652567	19652599	chr2L	19674011	19674055	opus	9	21454	1.0	5.5	3.2	2.1	21488	chr2L	19652567	intron	Lar +	chr2L	19663311	intron	Lar +	chr2L	19674055	intron	Lar +	chr2L_9_19660001	chr2L_19660001	RAL-911
375	chr2L	19703528	19703564	chr2L	19712679	19712703	roo	7	9152	6.5	6.0	6.2	1.0	9175	chr2L	19703528	intron	Lar +	chr2L	19708116	intron	Lar +	chr2L	19712703	intron	Lar +	chr2L_7_19705001	chr2L_19705001	RAL-911
376	chr2L	19762799	19762836	chr2L	19763058	19763097	pogo	10	257	2.5	4.5	3.5	2.2	298	chr2L	19762799	5` UTR	fbp -	chr2L	19762948	intron	fbp -	chr2L	19763097	intron	fbp -	chr2L_10_19760001	chr2L_19760001	RAL-911
379	chr2L	20005857	20005899	chr2L	20010953	20010995	flea	11	5095	7.0	5.0	6.0	1.6	5138	chr2L	20005857	intron	CG43861 -	chr2L	20008426	intron	CG43861 -	chr2L	20010995	intron	CG43861 -	chr2L_11_20005001	chr2L_20005001	RAL-911
382	chr2L	20272103	20272144	chr2L	20282825	20282859	copia	9	10722	5.5	2.0	3.8	1.9	10756	chr2L	20272103	intergenic	not near genes	chr2L	20277481	intergenic	not near genes	chr2L	20282859	intergenic	not near genes	chr2L_9_20275001	chr2L_20275001	RAL-911
387	chr2L	20372204	20372221	chr2L	20372474	20372491	pogo	6	268	2.0	3.5	2.8	1.6	287	chr2L	20372204	intergenic	Ugt37a1 -	chr2L	20372348	intergenic	Ugt37a1 -	chr2L	20372491	exon	Ugt37a1 -	chr2L_6_20370001	chr2L_20370001	RAL-911
391	chr2L	20568650	20568686	chr2L	20569060	20569096	X-element	9	410	1.5	2.0	1.8	3.2	446	chr2L	20568650	intron	CR45347 +	chr2L	20568873	intron	CR45347 +	chr2L	20569096	intron	CR45347 +	chr2L_9_20565001	chr2L_20565001	RAL-911
392	chr2L	20576213	20576249	chr2L	20583696	20583735	blood	11	7485	2.0	2.0	2.0	3.7	7522	chr2L	20576213	intergenic	CR45347 +	chr2L	20579974	intergenic	not near genes	chr2L	20583735	3` UTR	CR44909 -	chr2L_11_20575001	chr2L_20575001	RAL-911
396	chr2L	20835792	20835839	chr2L	20836529	20836576	Quasimodo	13	737	3.5	2.0	2.8	3.4	784	chr2L	20835792	5` UTR	Oseg5 -	chr2L	20836184	intergenic	Oseg5 -,Spn38F -	chr2L	20836576	intergenic	Spn38F -	chr2L_13_20835001	chr2L_20835001	RAL-911
398	chr2L	20891519	20891545	chr2L	20896635	20896666	jockey	6	5118	3.0	3.0	3.0	1.5	5147	chr2L	20891519	intron,intron	CG43739 -,sky -	chr2L	20894092	intron,intron	CG43739 -,sky -	chr2L	20896666	intron,intron	CG43739 -,sky -	chr2L_6_20890001	chr2L_20890001	RAL-911
399	chr2L	20901478	20901487	chr2L	20902624	20902650	1360	5	1160	0.5	0.0	0.2	4.2	1172	chr2L	20901478	intron,intron	CG43739 -,sky -	chr2L	20902064	intron,intron	CG43739 -,sky -	chr2L	20902650	intron,intron	CG43739 -,sky -	chr2L_5_20900001	chr2L_20900001	RAL-911
402	chr2L	20976620	20976675	chr2L	20981455	20981510	X-element	10	4832	6.0	5.0	5.5	1.5	4890	chr2L	20976620	intron	CG42238 -	chr2L	20979065	intron	CG42238 -	chr2L	20981510	intron	CG42238 -	chr2L_10_20975001	chr2L_20975001	RAL-911
405	chr2L	21020259	21020294	chr2L	21023956	21023966	NOF	7	3688	3.0	1.5	2.2	2.2	3707	chr2L	21020259	intron	CG42238 -	chr2L	21022112	intron	CG42238 -	chr2L	21023966	intron	CG42238 -	chr2L_7_21020001	chr2L_21020001	RAL-911
406	chr2L	21041119	21041161	chr2L	21049400	21049415	Tirant	4	8270	2.0	3.5	2.8	1.1	8296	chr2L	21041119	intron	CG42238 -	chr2L	21045267	intron	CG42238 -	chr2L	21049415	intron	CG42238 -	chr2L_4_21045001	chr2L_21045001	RAL-911
413	chr2L	21347550	21347576	chr2L	21355042	21355068	blood	6	7492	5.5	6.0	5.8	0.9	7518	chr2L	21347550	intron	Tsp39D +	chr2L	21351309	intron	Tsp39D +	chr2L	21355068	intron	Tsp39D +	chr2L_6_21350001	chr2L_21350001	RAL-911
415	chr2L	21597031	21597058	chr2L	21604773	21604821	roo	5	7754	4.5	3.5	4.0	1.0	7790	chr2L	21597031	intergenic	not near genes	chr2L	21600926	intergenic	not near genes	chr2L	21604821	intergenic	not near genes	chr2L_5_21600001	chr2L_21600001	RAL-911
418	chr2L	21981674	21981701	chr2L	21990855	21990885	roo	6	9181	4.5	1.5	3.0	1.5	9211	chr2L	21981674	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990885	exon	CG2528 -	chr2L_6_21985001	chr2L_21985001	RAL-911
424	chr2L	22258592	22258628	chr2L	22260737	22260773	G6	5	2142	3.0	1.0	2.0	1.7	2181	chr2L	22258592	intergenic	Tif-IA +	chr2L	22259682	intergenic	not near genes	chr2L	22260773	intergenic	not near genes	chr2L_5_22255001	chr2L_22255001	RAL-911
429	chr2L	22548929	22548942	chr2L	22550134	22550187	1360	7	1235	0.5	7.5	4.0	1.4	1258	chr2L	22548929	intergenic	CG17490 +	chr2L	22549558	intergenic	not near genes	chr2L	22550187	intergenic	CG17493 +	chr2L_7_22545001	chr2L_22545001	RAL-911
430	chr2L	22581958	22581993	chr2L	22583766	22583790	S-element	9	1806	6.5	2.0	4.2	1.7	1832	chr2L	22581958	intron	CG17494 +	chr2L	22582874	intron	CG17494 +	chr2L	22583790	intron	CG17494 +	chr2L_9_22580001	chr2L_22580001	RAL-911
433	chr2L	22776406	22776451	chr2L	22778215	22778260	S-element	13	1809	4.0	5.5	4.8	2.2	1854	chr2L	22776406	intergenic	not near genes	chr2L	22777333	intergenic	not near genes	chr2L	22778260	intergenic	not near genes	chr2L_13_22775001	chr2L_22775001	RAL-911
434	chr2R	1082366	1082380	chr2R	1087161	1087176	Doc	4	4794	1.5	9.0	5.2	0.6	4810	chr2R	1082366	intron	rl +	chr2R	1084771	intron	rl +	chr2R	1087176	intron	rl +	chr2R_4_1080001	chr2R_1080001	RAL-911
436	chr2R	1516586	1516602	chr2R	1521333	1521350	1731	8	4748	15.5	12.0	13.8	0.5	4764	chr2R	1516586	exon	Maf1 -	chr2R	1518968	intron	Maf1 -	chr2R	1521350	5` UTR	Maf1 -	chr2R_8_1515001	chr2R_1515001	RAL-911
439	chr2R	2110486	2110498	chr2R	2118063	2118073	17.6	4	7577	2.0	2.5	2.2	1.2	7587	chr2R	2110486	intron	CG17684 -	chr2R	2114280	intron	CG17684 -	chr2R	2118073	intron	CG17684 -	chr2R_4_2110001	chr2R_2110001	RAL-911
440	chr2R	2498967	2499016	chr2R	2508134	2508183	roo	7	9164	4.0	4.0	4.0	1.4	9216	chr2R	2498967	intron	MFS17 -	chr2R	2503575	intron	MFS17 -	chr2R	2508183	intron	MFS17 -	chr2R_7_2500001	chr2R_2500001	RAL-911
442	chr2R	3532598	3532642	chr2R	3536061	3536105	Doc	8	3463	3.0	3.5	3.2	1.9	3507	chr2R	3532598	intergenic	not near genes	chr2R	3534352	intergenic	not near genes	chr2R	3536105	intergenic	not near genes	chr2R_8_3530001	chr2R_3530001	RAL-911
445	chr2R	4622936	4622979	chr2R	4624115	4624148	1360	8	1177	2.0	3.0	2.5	2.3	1212	chr2R	4622936	intergenic	CR44101 -	chr2R	4623542	intergenic	not near genes	chr2R	4624148	intergenic	not near genes	chr2R_8_4620001	chr2R_4620001	RAL-911
451	chr2R	4870723	4870741	chr2R	4871254	4871272	R1A1-element	4	528	1.0	2.0	1.5	1.6	549	chr2R	4870723	intergenic	not near genes	chr2R	4870998	intergenic	not near genes	chr2R	4871272	intergenic	not near genes	chr2R_4_4870001	chr2R_4870001	RAL-911
457	chr2R	5417976	5418009	chr2R	5420628	5420654	Burdock	8	2648	4.0	3.0	3.5	1.8	2678	chr2R	5417976	intron	laccase2 +	chr2R	5419315	intron	laccase2 +	chr2R	5420654	intron	laccase2 +	chr2R_8_5415001	chr2R_5415001	RAL-911
460	chr2R	5543206	5543221	chr2R	5547310	5547325	invader1	5	4103	0.0	11.0	5.5	0.8	4119	chr2R	5543206	intron	CG30438 +	chr2R	5545266	intron	CG30438 +	chr2R	5547325	intron	CG30438 +	chr2R_5_5545001	chr2R_5545001	RAL-911
464	chr2R	5869283	5869306	chr2R	5874352	5874387	flea	9	5089	4.5	4.0	4.2	1.7	5104	chr2R	5869283	intergenic	not near genes	chr2R	5871835	intergenic	not near genes	chr2R	5874387	intergenic	not near genes	chr2R_9_5870001	chr2R_5870001	RAL-911
465	chr2R	5902140	5902191	chr2R	5909718	5909770	17.6	4	7579	2.0	4.5	3.2	1.0	7630	chr2R	5902140	intron	CG43366 +	chr2R	5905955	intron	CG43366 +	chr2R	5909770	intron	CG43366 +	chr2R_4_5905001	chr2R_5905001	RAL-911
475	chr2R	6579752	6579806	chr2R	6584858	6584897	flea	20	5105	3.5	2.5	3.0	5.0	5145	chr2R	6579752	intron	jing +	chr2R	6582324	intron	jing +	chr2R	6584897	intron	jing +	chr2R_20_6580001	chr2R_6580001	RAL-911
477	chr2R	6952151	6952183	chr2R	6959751	6959782	opus	9	7600	4.5	5.0	4.8	1.6	7631	chr2R	6952151	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955966	intron,intron	mim -,CheB42c -	chr2R	6959782	intron,intron	mim -,CheB42c -	chr2R_9_6955001	chr2R_6955001	RAL-911
485	chr2R	7196552	7196595	chr2R	7201347	7201390	F-element	16	4794	3.0	6.0	4.5	2.9	4838	chr2R	7196552	intron	pk +	chr2R	7198971	intron	pk +	chr2R	7201390	intron	pk +	chr2R_16_7195001	chr2R_7195001	RAL-911
486	chr2R	7235801	7235851	chr2R	7240912	7240949	jockey	5	5101	2.5	3.0	2.8	1.3	5148	chr2R	7235801	intergenic	not near genes	chr2R	7238375	intergenic	not near genes	chr2R	7240949	intergenic	not near genes	chr2R_5_7235001	chr2R_7235001	RAL-911
490	chr2R	7434882	7434915	chr2R	7439201	7439223	Juan	7	4319	5.0	5.0	5.0	1.2	4341	chr2R	7434882	intergenic	so +	chr2R	7437052	intergenic	not near genes	chr2R	7439223	intergenic	not near genes	chr2R_7_7435001	chr2R_7435001	RAL-911
495	chr2R	7815650	7815697	chr2R	7822139	7822158	Burdock	12	6483	3.0	2.5	2.8	3.2	6508	chr2R	7815650	intergenic	CG1882 +	chr2R	7818904	intergenic	not near genes	chr2R	7822158	3` UTR	cathD -	chr2R_12_7815001	chr2R_7815001	RAL-911
496	chr2R	7862240	7862248	chr2R	7867373	7867381	flea	4	5133	3.0	5.5	4.2	0.8	5141	chr2R	7862240	intron	Dgk -	chr2R	7864810	intron	Dgk -	chr2R	7867381	intron	Dgk -	chr2R_4_7860001	chr2R_7860001	RAL-911
497	chr2R	7869196	7869209	chr2R	7873977	7874001	Doc	6	4796	6.0	2.0	4.0	1.2	4805	chr2R	7869196	intron	Dgk -	chr2R	7871598	intron	Dgk -	chr2R	7874001	intron	Dgk -	chr2R_6_7870001	chr2R_7870001	RAL-911
506	chr2R	8330858	8330883	chr2R	8331364	8331367	roo	7	502	3.5	4.5	4.0	1.4	509	chr2R	8330858	intron	pdm3 +	chr2R	8331112	intron	pdm3 +	chr2R	8331367	intron	pdm3 +	chr2R_7_8330001	chr2R_8330001	RAL-911
510	chr2R	8566046	8566065	chr2R	8566983	8567027	1360	5	958	4.0	0.0	2.0	1.7	981	chr2R	8566046	5` UTR	Cyp6a14 -	chr2R	8566536	5` UTR	Cyp6a14 -	chr2R	8567027	5` UTR	Cyp6a14 -	chr2R_5_8565001	chr2R_8565001	RAL-911
513	chr2R	8722745	8722780	chr2R	8723004	8723013	pogo	5	243	4.5	2.5	3.5	1.1	268	chr2R	8722745	intron	CG14767 -	chr2R	8722879	intron	CG14767 -	chr2R	8723013	intron	CG14767 -	chr2R_5_8720001	chr2R_8720001	RAL-911
514	chr2R	8777889	8777937	chr2R	8784100	8784148	diver	9	6208	6.0	4.0	5.0	1.5	6259	chr2R	8777889	intergenic	not near genes	chr2R	8781018	intergenic	not near genes	chr2R	8784148	intergenic	not near genes	chr2R_9_8780001	chr2R_8780001	RAL-911
516	chr2R	9151282	9151334	chr2R	9157772	9157811	Burdock	17	6488	5.5	6.5	6.0	2.4	6529	chr2R	9151282	exon	CG30345 +	chr2R	9154546	intergenic	not near genes	chr2R	9157811	intergenic	CG8008 -	chr2R_17_9150001	chr2R_9150001	RAL-911
526	chr2R	9480058	9480105	chr2R	9490609	9490656	roo	13	10550	3.0	3.0	3.0	3.2	10598	chr2R	9480058	intergenic	not near genes	chr2R	9485357	intergenic	not near genes	chr2R	9490656	intergenic	not near genes	chr2R_13_9485001	chr2R_9485001	RAL-911
530	chr2R	9726602	9726637	chr2R	9734168	9734208	17.6	7	7570	4.0	4.0	4.0	1.4	7606	chr2R	9726602	intron	sqa -	chr2R	9730405	intron	sqa -	chr2R	9734208	intron	sqa -	chr2R_7_9730001	chr2R_9730001	RAL-911
533	chr2R	9945420	9945458	chr2R	9945636	9945673	BS	6	211	2.0	2.0	2.0	2.0	253	chr2R	9945420	intron	Mef2 -	chr2R	9945546	intron	Mef2 -	chr2R	9945673	intron	Mef2 -	chr2R_6_9945001	chr2R_9945001	RAL-911
537	chr2R	10176855	10176908	chr2R	10186045	10186098	roo	18	9190	0.0	4.5	2.2	5.6	9243	chr2R	10176855	intron	KCNQ -	chr2R	10181476	intron	KCNQ -	chr2R	10186098	intron	KCNQ -	chr2R_18_10180001	chr2R_10180001	RAL-911
546	chr2R	10622338	10622360	chr2R	10637123	10637137	mdg1	5	14782	8.0	6.0	7.0	0.6	14799	chr2R	10622338	intron	CG11883 +	chr2R	10629738	intron	CG11883 +	chr2R	10637137	intron	CG11883 +	chr2R_5_10625001	chr2R_10625001	RAL-911
555	chr2R	10979663	10979685	chr2R	10980152	10980177	297	5	487	2.0	5.5	3.8	1.0	514	chr2R	10979663	intergenic	not near genes	chr2R	10979920	intergenic	not near genes	chr2R	10980177	intergenic	not near genes	chr2R_5_10975001	chr2R_10975001	RAL-911
556	chr2R	11009807	11009821	chr2R	11019001	11019004	roo	5	9192	4.5	2.0	3.2	1.2	9197	chr2R	11009807	intron	luna -	chr2R	11014406	intron	luna -	chr2R	11019004	intron	luna -	chr2R_5_11010001	chr2R_11010001	RAL-911
562	chr2R	11207814	11207842	chr2R	11208027	11208055	BS	7	211	4.5	8.0	6.2	1.0	241	chr2R	11207814	intron	shn +	chr2R	11207934	intron	shn +	chr2R	11208055	intron	shn +	chr2R_7_11205001	chr2R_11205001	RAL-911
564	chr2R	11297626	11297645	chr2R	11301967	11301986	flea	7	4340	2.5	0.5	1.5	2.8	4360	chr2R	11297626	intergenic	CG42336 -	chr2R	11299806	intergenic	not near genes	chr2R	11301986	5` UTR	CG7741 +	chr2R_7_11295001	chr2R_11295001	RAL-911
568	chr2R	11415550	11415551	chr2R	11418673	11418720	opus	4	3150	2.5	5.0	3.8	0.8	3170	chr2R	11415550	intron	Drip -	chr2R	11417135	intron	Drip -	chr2R	11418720	intron	Drip -	chr2R_4_11415001	chr2R_11415001	RAL-911
570	chr2R	11472644	11472678	chr2R	11473861	11473883	pogo	4	1211	5.0	4.0	4.5	0.7	1239	chr2R	11472644	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473883	intergenic	not near genes	chr2R_4_11470001	chr2R_11470001	RAL-911
588	chr2R	12707497	12707542	chr2R	12715883	12715928	roo	15	8384	8.0	1.5	4.8	2.6	8431	chr2R	12707497	intron	CG42663 +	chr2R	12711712	intron	CG42663 +	chr2R	12715928	intron	CG42663 +	chr2R_15_12710001	chr2R_12710001	RAL-911
592	chr2R	12819452	12819475	chr2R	12824541	12824564	jockey	5	5088	3.0	9.5	6.2	0.7	5112	chr2R	12819452	intergenic	not near genes	chr2R	12822008	intergenic	not near genes	chr2R	12824564	intergenic	not near genes	chr2R_5_12820001	chr2R_12820001	RAL-911
595	chr2R	13136835	13136852	chr2R	13141643	13141656	Doc	4	4808	3.5	1.0	2.2	1.2	4821	chr2R	13136835	exon	Cap-G +	chr2R	13139246	intron	Cap-G +	chr2R	13141656	intron	Cap-G +	chr2R_4_13135001	chr2R_13135001	RAL-911
608	chr2R	13728116	13728161	chr2R	13735793	13735838	opus	12	7677	5.5	5.0	5.2	1.9	7722	chr2R	13728116	intron	fas +	chr2R	13731977	intron	fas +	chr2R	13735838	intron	fas +	chr2R_12_13730001	chr2R_13730001	RAL-911
618	chr2R	14394211	14394236	chr2R	14399020	14399029	Doc	6	4806	3.5	6.5	5.0	1.0	4818	chr2R	14394211	intergenic	not near genes	chr2R	14396620	intergenic	not near genes	chr2R	14399029	intergenic	not near genes	chr2R_6_14395001	chr2R_14395001	RAL-911
619	chr2R	14497378	14497419	chr2R	14498554	14498604	1360	21	1185	6.0	4.5	5.2	3.4	1226	chr2R	14497378	3` UTR	Cpsf160 -	chr2R	14497991	intron	Cpsf160 -	chr2R	14498604	3` UTR	Cpsf160 -	chr2R_21_14495001	chr2R_14495001	RAL-911
631	chr2R	15004719	15004744	chr2R	15005062	15005093	jockey	4	348	4.0	2.0	3.0	1.0	374	chr2R	15004719	intergenic	not near genes	chr2R	15004906	intergenic	not near genes	chr2R	15005093	intergenic	not near genes	chr2R_4_15000001	chr2R_15000001	RAL-911
632	chr2R	15004747	15004754	chr2R	15005059	15005103	jockey	5	341	4.0	2.0	3.0	1.2	356	chr2R	15004747	intergenic	not near genes	chr2R	15004925	intergenic	not near genes	chr2R	15005103	intergenic	not near genes	chr2R_5_15000001	chr2R_15000001	RAL-911
633	chr2R	15015453	15015472	chr2R	15022893	15022916	mdg1	8	7443	1.5	7.0	4.2	1.5	7463	chr2R	15015453	intron	hbs +	chr2R	15019184	intron	hbs +	chr2R	15022916	intron	hbs +	chr2R_8_15015001	chr2R_15015001	RAL-911
650	chr2R	16539620	16539632	chr2R	16544846	16544858	copia	4	5226	1.0	0.0	0.5	2.7	5238	chr2R	16539620	intergenic	not near genes	chr2R	16542239	intergenic	not near genes	chr2R	16544858	intergenic	not near genes	chr2R_4_16540001	chr2R_16540001	RAL-911
664	chr2R	17147233	17147242	chr2R	17152277	17152293	jockey	5	5050	6.5	5.0	5.8	0.7	5060	chr2R	17147233	intergenic	not near genes	chr2R	17149763	intergenic	not near genes	chr2R	17152293	intergenic	not near genes	chr2R_5_17145001	chr2R_17145001	RAL-911
665	chr2R	17147249	17147263	chr2R	17152271	17152313	jockey	8	5045	4.0	5.0	4.5	1.5	5064	chr2R	17147249	intergenic	not near genes	chr2R	17149781	intergenic	not near genes	chr2R	17152313	intergenic	not near genes	chr2R_8_17145001	chr2R_17145001	RAL-911
666	chr2R	17176356	17176372	chr2R	17182566	17182580	diver	6	6207	0.0	5.5	2.8	1.6	6224	chr2R	17176356	intergenic	not near genes	chr2R	17179468	intergenic	not near genes	chr2R	17182580	intergenic	not near genes	chr2R_6_17175001	chr2R_17175001	RAL-911
667	chr2R	17176377	17176388	chr2R	17182542	17182598	diver	7	6203	0.0	3.5	1.8	2.5	6221	chr2R	17176377	intergenic	not near genes	chr2R	17179488	intergenic	not near genes	chr2R	17182598	intergenic	not near genes	chr2R_7_17175001	chr2R_17175001	RAL-911
675	chr2R	17485896	17485951	chr2R	17490678	17490731	F-element	6	4774	3.5	1.0	2.2	1.9	4835	chr2R	17485896	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488314	intron	NT5E-2 +	chr2R	17490731	intron	NT5E-2 +	chr2R_6_17485001	chr2R_17485001	RAL-911
679	chr2R	17782343	17782394	chr2R	17783566	17783617	pogo	16	1221	3.5	4.0	3.8	3.3	1274	chr2R	17782343	intergenic	CG33981 -,fab1 -	chr2R	17782980	intergenic	not near genes	chr2R	17783617	intergenic	mir-31a -	chr2R_16_17780001	chr2R_17780001	RAL-911
680	chr2R	17784012	17784056	chr2R	17784271	17784300	pogo	10	258	2.0	2.0	2.0	3.3	288	chr2R	17784012	intergenic	mir-31a -	chr2R	17784156	intergenic	mir-31a -	chr2R	17784300	intergenic	mir-31a -	chr2R_10_17780001	chr2R_17780001	RAL-911
686	chr2R	18045656	18045703	chr2R	18046028	18046075	jockey	14	372	4.5	7.0	5.8	2.1	419	chr2R	18045656	intergenic	not near genes	chr2R	18045866	intergenic	not near genes	chr2R	18046075	intergenic	CG5767 -	chr2R_14_18045001	chr2R_18045001	RAL-911
687	chr2R	18111664	18111711	chr2R	18115552	18115598	F-element	11	3888	2.5	0.5	1.5	4.4	3934	chr2R	18111664	intergenic	not near genes	chr2R	18113631	intergenic	not near genes	chr2R	18115598	intergenic	not near genes	chr2R_11_18110001	chr2R_18110001	RAL-911
689	chr2R	18358378	18358413	chr2R	18372609	18372645	roo	15	14231	5.0	4.5	4.8	2.6	14267	chr2R	18358378	intergenic	not near genes	chr2R	18365512	intergenic	not near genes	chr2R	18372645	intergenic	not near genes	chr2R_15_18365001	chr2R_18365001	RAL-911
693	chr2R	18575811	18575829	chr2R	18581984	18582032	3S18	4	6198	1.5	3.0	2.2	1.2	6221	chr2R	18575811	intron	GEFmeso -	chr2R	18578922	intron	GEFmeso -	chr2R	18582032	intron	GEFmeso -	chr2R_4_18575001	chr2R_18575001	RAL-911
694	chr2R	18590865	18590901	chr2R	18600037	18600047	roo	5	9160	3.5	0.5	2.0	1.7	9182	chr2R	18590865	intron	GEFmeso -	chr2R	18595456	intron	GEFmeso -	chr2R	18600047	intron	GEFmeso -	chr2R_5_18595001	chr2R_18595001	RAL-911
709	chr2R	19776579	19776603	chr2R	19779918	19779946	jockey	4	3336	4.5	2.5	3.5	0.9	3367	chr2R	19776579	intergenic	not near genes	chr2R	19778262	intergenic	not near genes	chr2R	19779946	intergenic	not near genes	chr2R_4_19775001	chr2R_19775001	RAL-911
711	chr2R	19914828	19914876	chr2R	19922260	19922308	mdg1	9	7432	3.0	3.5	3.2	2.1	7480	chr2R	19914828	intergenic	not near genes	chr2R	19918568	intergenic	not near genes	chr2R	19922308	intergenic	not near genes	chr2R_9_19915001	chr2R_19915001	RAL-911
716	chr2R	20069226	20069270	chr2R	20071876	20071920	opus	8	2647	5.0	3.5	4.2	1.5	2694	chr2R	20069226	intergenic	not near genes	chr2R	20070573	intergenic	not near genes	chr2R	20071920	intergenic	not near genes	chr2R_8_20070001	chr2R_20070001	RAL-911
725	chr2R	20739430	20739470	chr2R	20744209	20744248	F-element	4	4777	3.0	0.5	1.8	1.4	4818	chr2R	20739430	intron	dpr +	chr2R	20741839	intron	dpr +	chr2R	20744248	intron	dpr +	chr2R_4_20740001	chr2R_20740001	RAL-911
726	chr2R	20783298	20783332	chr2R	20788088	20788124	F-element	11	4790	3.5	2.0	2.8	2.9	4826	chr2R	20783298	intergenic	not near genes	chr2R	20785711	intergenic	not near genes	chr2R	20788124	intergenic	CG43666 -	chr2R_11_20785001	chr2R_20785001	RAL-911
732	chr2R	21151110	21151143	chr2R	21153748	21153795	opus	6	2644	5.0	1.5	3.2	1.4	2685	chr2R	21151110	intron	CG30389 -	chr2R	21152452	intron	CG30389 -	chr2R	21153795	intron	CG30389 -	chr2R_6_21150001	chr2R_21150001	RAL-911
743	chr2R	21809502	21809513	chr2R	21817762	21817773	roo	6	8260	2.0	3.5	2.8	1.6	8271	chr2R	21809502	intergenic	not near genes	chr2R	21813638	intergenic	not near genes	chr2R	21817773	intergenic	not near genes	chr2R_6_21810001	chr2R_21810001	RAL-911
756	chr2R	22360366	22360391	chr2R	22360818	22360828	jockey	4	449	3.5	2.5	3.0	1.0	462	chr2R	22360366	intron	Liprin-gamma -	chr2R	22360597	intron	Liprin-gamma -	chr2R	22360828	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	RAL-911
759	chr2R	22465300	22465345	chr2R	22465519	22465564	BS	16	217	3.0	5.0	4.0	3.2	264	chr2R	22465300	intron	CG10384 +	chr2R	22465432	intron	CG10384 +	chr2R	22465564	intron	CG10384 +	chr2R_16_22465001	chr2R_22465001	RAL-911
764	chr2R	22580419	22580444	chr2R	22586583	22586608	diver	4	6164	5.5	5.5	5.5	0.6	6189	chr2R	22580419	intron	dnr1 -	chr2R	22583514	intron	dnr1 -	chr2R	22586608	intron	dnr1 -	chr2R_4_22580001	chr2R_22580001	RAL-911
766	chr2R	22774949	22774990	chr2R	22775386	22775429	jockey	14	435	5.0	4.5	4.8	2.4	480	chr2R	22774949	intron	CG42260 -	chr2R	22775189	intron	CG42260 -	chr2R	22775429	intron	CG42260 -	chr2R_14_22775001	chr2R_22775001	RAL-911
775	chr2R	23402594	23402641	chr2R	23407690	23407737	flea	6	5096	2.5	3.5	3.0	1.5	5143	chr2R	23402594	intergenic	CG3520 -	chr2R	23405166	intergenic	not near genes	chr2R	23407737	intergenic	not near genes	chr2R_6_23405001	chr2R_23405001	RAL-911
781	chr2R	23914326	23914330	chr2R	23921939	23921974	412	4	7634	3.5	2.0	2.8	1.1	7648	chr2R	23914326	exon	kcc +	chr2R	23918150	intron	kcc +	chr2R	23921974	exon	kcc +	chr2R_4_23915001	chr2R_23915001	RAL-911
784	chr2R	24177215	24177256	chr2R	24184720	24184756	412	10	7502	3.0	4.5	3.8	2.1	7541	chr2R	24177215	3` UTR	Nop60B +	chr2R	24180986	intron	Nop60B +	chr2R	24184756	3` UTR	Nop60B +	chr2R_10_24180001	chr2R_24180001	RAL-911
786	chr2R	24353415	24353455	chr2R	24361788	24361813	roo	13	8376	2.5	3.0	2.8	3.4	8398	chr2R	24353415	intron,intron	bs +,CR44811 -	chr2R	24357614	intron,intron	bs +,CR44811 -	chr2R	24361813	intron,intron	bs +,CR44811 -	chr2R_13_24355001	chr2R_24355001	RAL-911
790	chr2R	24727866	24727892	chr2R	24735394	24735414	mdg1	4	7526	3.5	0.0	1.8	1.4	7548	chr2R	24727866	intron	Mid1 -	chr2R	24731640	intron	Mid1 -	chr2R	24735414	intron	Mid1 -	chr2R_4_24730001	chr2R_24730001	RAL-911
798	chr2R	25141643	25141683	chr2R	25159353	25159361	roo	5	17699	2.5	6.5	4.5	0.9	17718	chr2R	25141643	intergenic	not near genes	chr2R	25150502	intergenic	not near genes	chr2R	25159361	intergenic	not near genes	chr2R_5_25150001	chr2R_25150001	RAL-911
805	chr3L	110196	110241	chr3L	119377	119411	roo	10	9175	5.0	6.0	5.5	1.5	9215	chr3L	110196	intergenic	not near genes	chr3L	114804	intergenic	not near genes	chr3L	119411	intergenic	not near genes	chr3L_10_110001	chr3L_110001	RAL-911
807	chr3L	402701	402717	chr3L	409754	409790	297	7	7070	3.0	5.5	4.2	1.3	7089	chr3L	402701	intergenic	not near genes	chr3L	406246	intergenic	not near genes	chr3L	409790	intergenic	not near genes	chr3L_7_405001	chr3L_405001	RAL-911
818	chr3L	925167	925205	chr3L	932603	932651	mdg1	7	7437	0.5	5.0	2.8	1.8	7484	chr3L	925167	intron	Glut1 +	chr3L	928909	intron	Glut1 +	chr3L	932651	intron	Glut1 +	chr3L_7_925001	chr3L_925001	RAL-911
820	chr3L	939764	939796	chr3L	940905	940936	jockey	9	1140	3.5	3.5	3.5	2.0	1172	chr3L	939764	intron	Glut1 +	chr3L	940350	intron	Glut1 +	chr3L	940936	intron	Glut1 +	chr3L_9_940001	chr3L_940001	RAL-911
826	chr3L	1154129	1154160	chr3L	1163289	1163290	roo	4	9153	6.0	1.5	3.8	0.8	9161	chr3L	1154129	intron	bab2 -	chr3L	1158710	intron	bab2 -	chr3L	1163290	intron	bab2 -	chr3L_4_1155001	chr3L_1155001	RAL-911
831	chr3L	1506000	1506022	chr3L	1513609	1513639	17.6	4	7612	2.5	3.0	2.8	1.1	7639	chr3L	1506000	intron,intron	Psa +,cue -	chr3L	1509820	intron,intron	Psa +,cue -	chr3L	1513639	intron,intron	Psa +,cue -	chr3L_4_1505001	chr3L_1505001	RAL-911
834	chr3L	1740840	1740884	chr3L	1741101	1741107	pogo	9	249	5.0	5.5	5.2	1.5	267	chr3L	1740840	intron	Gk +	chr3L	1740974	intron	Gk +	chr3L	1741107	intron	Gk +	chr3L_9_1740001	chr3L_1740001	RAL-911
836	chr3L	2108231	2108279	chr3L	2113455	2113502	copia	16	5223	4.0	4.5	4.2	3.1	5271	chr3L	2108231	intron	sls -	chr3L	2110866	intron	sls -	chr3L	2113502	intron	sls -	chr3L_16_2110001	chr3L_2110001	RAL-911
855	chr3L	2927822	2927863	chr3L	2936119	2936155	Tirant	4	8292	4.0	3.5	3.8	0.8	8333	chr3L	2927822	intron	Shab +	chr3L	2931988	intron	Shab +	chr3L	2936155	intron	Shab +	chr3L_4_2930001	chr3L_2930001	RAL-911
856	chr3L	2966705	2966722	chr3L	2974150	2974167	mdg1	5	7445	8.5	4.0	6.2	0.7	7462	chr3L	2966705	intergenic	not near genes	chr3L	2970436	intergenic	not near genes	chr3L	2974167	intergenic	not near genes	chr3L_5_2970001	chr3L_2970001	RAL-911
859	chr3L	3040313	3040329	chr3L	3042122	3042138	S-element	7	1809	8.5	1.0	4.8	1.2	1825	chr3L	3040313	3` UTR	CG2162 +	chr3L	3041226	intergenic	not near genes	chr3L	3042138	intergenic	Jafrac2 +	chr3L_7_3040001	chr3L_3040001	RAL-911
860	chr3L	3051724	3051754	chr3L	3051986	3052010	pogo	9	261	9.0	1.0	5.0	1.5	286	chr3L	3051724	3` UTR	CG32485 +	chr3L	3051867	intergenic	CG32485 +	chr3L	3052010	intergenic	CG32485 +	chr3L_9_3050001	chr3L_3050001	RAL-911
864	chr3L	3281461	3281472	chr3L	3281932	3281972	Doc	5	493	2.0	3.0	2.5	1.4	511	chr3L	3281461	intron	CG12017 +	chr3L	3281716	intron	CG12017 +	chr3L	3281972	intron	CG12017 +	chr3L_5_3280001	chr3L_3280001	RAL-911
869	chr3L	3475071	3475113	chr3L	3475517	3475560	jockey	6	458	1.0	1.0	1.0	3.0	489	chr3L	3475071	intron	CG42324 +	chr3L	3475316	intron	CG42324 +	chr3L	3475560	intron	CG42324 +	chr3L_6_3475001	chr3L_3475001	RAL-911
874	chr3L	3601280	3601324	chr3L	3606611	3606630	copia	7	5327	4.0	1.0	2.5	2.0	5350	chr3L	3601280	intron	Eip63E +	chr3L	3603955	intron	Eip63E +	chr3L	3606630	intron	Eip63E +	chr3L_7_3600001	chr3L_3600001	RAL-911
880	chr3L	3833717	3833751	chr3L	3833978	3834012	pogo	9	260	3.5	0.5	2.0	3.0	295	chr3L	3833717	intron	enc +	chr3L	3833864	intron	enc +	chr3L	3834012	intron	enc +	chr3L_9_3830001	chr3L_3830001	RAL-911
886	chr3L	4328744	4328761	chr3L	4336247	4336279	412	16	7514	4.0	4.5	4.2	3.1	7535	chr3L	4328744	intron	Cip4 -	chr3L	4332512	intron	Cip4 -	chr3L	4336279	exon	Cip4 -	chr3L_16_4330001	chr3L_4330001	RAL-911
892	chr3L	4901118	4901149	chr3L	4907328	4907359	diver	11	6207	12.0	9.0	10.5	1.0	6241	chr3L	4901118	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907359	intergenic	not near genes	chr3L_11_4900001	chr3L_4900001	RAL-911
893	chr3L	4898330	4898369	chr3L	4909472	4909511	diver	14	11142	23.0	9.5	16.2	0.8	11181	chr3L	4898330	3` UTR	CG13705 +	chr3L	4903920	intergenic	not near genes	chr3L	4909511	intergenic	not near genes	chr3L_14_4900001	chr3L_4900001	RAL-911
895	chr3L	5045446	5045478	chr3L	5050235	5050274	Doc	11	4797	5.0	4.0	4.5	2.0	4828	chr3L	5045446	intron	Con -	chr3L	5047860	intron	Con -	chr3L	5050274	intron	Con -	chr3L_11_5045001	chr3L_5045001	RAL-911
907	chr3L	5537700	5537735	chr3L	5538062	5538077	jockey	6	354	5.5	2.0	3.8	1.2	377	chr3L	5537700	intergenic	not near genes	chr3L	5537888	intergenic	not near genes	chr3L	5538077	intergenic	CG10625 -	chr3L_6_5535001	chr3L_5535001	RAL-911
913	chr3L	5910011	5910024	chr3L	5910272	5910285	pogo	4	261	9.0	0.0	4.5	0.7	274	chr3L	5910011	intron	CG13288 +	chr3L	5910148	intron	CG13288 +	chr3L	5910285	intron	CG13288 +	chr3L_4_5910001	chr3L_5910001	RAL-911
915	chr3L	6001665	6001714	chr3L	6004385	6004434	jockey	9	2717	2.5	1.0	1.8	3.2	2769	chr3L	6001665	intron	PVRAP +	chr3L	6003050	intron	PVRAP +	chr3L	6004434	intron	PVRAP +	chr3L_9_6000001	chr3L_6000001	RAL-911
922	chr3L	6220903	6220946	chr3L	6230075	6230118	roo	5	9167	3.0	5.5	4.2	1.0	9215	chr3L	6220903	5` UTR	pncr008:3L +	chr3L	6225510	intergenic	not near genes	chr3L	6230118	intergenic	not near genes	chr3L_5_6225001	chr3L_6225001	RAL-911
924	chr3L	6334989	6335036	chr3L	6335480	6335527	297	8	488	2.0	3.0	2.5	2.3	538	chr3L	6334989	intron	CG13300 -	chr3L	6335258	intron	CG13300 -	chr3L	6335527	intron	CG13300 -	chr3L_8_6335001	chr3L_6335001	RAL-911
925	chr3L	6405642	6405683	chr3L	6432126	6432167	roo	13	26483	4.0	5.5	4.8	2.2	26525	chr3L	6405642	intron	CG42747 +	chr3L	6418904	intron	CG42747 +	chr3L	6432167	intron	CG42747 +	chr3L_13_6415001	chr3L_6415001	RAL-911
933	chr3L	6781108	6781153	chr3L	6783141	6783183	Doc	10	2031	1.5	0.0	0.8	5.6	2075	chr3L	6781108	intergenic	not near genes	chr3L	6782146	intergenic	not near genes	chr3L	6783183	intergenic	not near genes	chr3L_10_6780001	chr3L_6780001	RAL-911
943	chr3L	7129934	7129981	chr3L	7130146	7130170	BS	18	211	3.5	3.0	3.2	4.3	236	chr3L	7129934	intergenic	CG15829 +	chr3L	7130052	intergenic	CG15829 +	chr3L	7130170	intergenic	CG15829 +	chr3L_18_7130001	chr3L_7130001	RAL-911
948	chr3L	7377295	7377348	chr3L	7380420	7380473	297	15	3122	4.5	2.5	3.5	3.3	3178	chr3L	7377295	intron	SMSr -	chr3L	7378884	intron	SMSr -	chr3L	7380473	intron	SMSr -	chr3L_15_7375001	chr3L_7375001	RAL-911
951	chr3L	7498746	7498779	chr3L	7503543	7503576	F-element	13	4795	5.5	10.5	8.0	1.4	4830	chr3L	7498746	5` UTR	CG8539 -	chr3L	7501161	intergenic	not near genes	chr3L	7503576	intergenic	not near genes	chr3L_13_7500001	chr3L_7500001	RAL-911
954	chr3L	7793713	7793739	chr3L	7800785	7800811	297	9	7070	3.5	8.5	6.0	1.3	7098	chr3L	7793713	intron	CG32369 -	chr3L	7797262	intron	CG32369 -	chr3L	7800811	intron	CG32369 -	chr3L_9_7795001	chr3L_7795001	RAL-911
956	chr3L	7886518	7886544	chr3L	7889050	7889082	Stalker4	9	2537	1.5	3.5	2.5	2.6	2564	chr3L	7886518	intron	CG32365 +	chr3L	7887800	intron	CG32365 +	chr3L	7889082	intron	CG32365 +	chr3L_9_7885001	chr3L_7885001	RAL-911
957	chr3L	7916811	7916856	chr3L	7926002	7926047	roo	14	9188	5.0	2.5	3.8	2.9	9236	chr3L	7916811	3` UTR	syd -	chr3L	7921429	intron	syd -	chr3L	7926047	3` UTR	syd -	chr3L_14_7920001	chr3L_7920001	RAL-911
959	chr3L	7985353	7985395	chr3L	7987704	7987744	NOF	7	2346	3.0	6.5	4.8	1.2	2391	chr3L	7985353	intron	nmo +	chr3L	7986548	intron	nmo +	chr3L	7987744	intron	nmo +	chr3L_7_7985001	chr3L_7985001	RAL-911
960	chr3L	8019679	8019732	chr3L	8024113	8024164	NOF	8	4433	1.5	0.0	0.8	4.4	4485	chr3L	8019679	intron	nmo +	chr3L	8021922	intron	nmo +	chr3L	8024164	intron	nmo +	chr3L_8_8020001	chr3L_8020001	RAL-911
969	chr3L	8498309	8498325	chr3L	8505796	8505812	blood	4	7486	0.0	7.0	3.5	0.9	7503	chr3L	8498309	intron	CG43163 -	chr3L	8502060	intron	CG43163 -	chr3L	8505812	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	RAL-911
981	chr3L	9076927	9076953	chr3L	9084495	9084531	412	4	7567	2.0	0.5	1.2	1.8	7604	chr3L	9076927	exon	Tequila +	chr3L	9080729	intron	Tequila +	chr3L	9084531	exon	Tequila +	chr3L_4_9080001	chr3L_9080001	RAL-911
982	chr3L	9164688	9164716	chr3L	9166163	9166197	hobo	9	1480	1.0	0.0	0.5	6.0	1509	chr3L	9164688	intron	Rdl -	chr3L	9165442	intron	Rdl -	chr3L	9166197	intron	Rdl -	chr3L_9_9165001	chr3L_9165001	RAL-911
983	chr3L	9219223	9219278	chr3L	9219915	9219927	jockey	5	668	2.5	3.0	2.8	1.3	704	chr3L	9219223	intergenic	not near genes	chr3L	9219575	intergenic	not near genes	chr3L	9219927	intergenic	not near genes	chr3L_5_9215001	chr3L_9215001	RAL-911
984	chr3L	9270615	9270645	chr3L	9278375	9278380	roo	4	7758	1.5	1.0	1.2	1.8	7765	chr3L	9270615	intron	GluRIB +	chr3L	9274498	intron	GluRIB +	chr3L	9278380	intron	GluRIB +	chr3L_4_9270001	chr3L_9270001	RAL-911
986	chr3L	9443507	9443529	chr3L	9445305	9445312	S-element	6	1803	4.5	4.0	4.2	1.2	1805	chr3L	9443507	intron	CG33926 +	chr3L	9444410	intron	CG33926 +	chr3L	9445312	intron	CG33926 +	chr3L_6_9440001	chr3L_9440001	RAL-911
987	chr3L	9501688	9501699	chr3L	9502194	9502205	roo	6	506	2.0	4.5	3.2	1.4	517	chr3L	9501688	intron	path -	chr3L	9501946	intron	path -	chr3L	9502205	intron	path -	chr3L_6_9500001	chr3L_9500001	RAL-911
988	chr3L	9501700	9501731	chr3L	9502188	9502235	roo	11	502	1.0	4.0	2.5	3.1	535	chr3L	9501700	intron	path -	chr3L	9501968	intron	path -	chr3L	9502235	intron	path -	chr3L_11_9500001	chr3L_9500001	RAL-911
990	chr3L	9571895	9571905	chr3L	9572256	9572273	jockey	5	366	6.5	0.0	3.2	1.2	378	chr3L	9571895	intron	CG42673 +	chr3L	9572084	intron	CG42673 +	chr3L	9572273	intron	CG42673 +	chr3L_5_9570001	chr3L_9570001	RAL-911
991	chr3L	9575898	9575940	chr3L	9580993	9581027	jockey	7	5097	1.5	3.0	2.2	2.2	5129	chr3L	9575898	intron	CG42673 +	chr3L	9578462	intron	CG42673 +	chr3L	9581027	intron	CG42673 +	chr3L_7_9575001	chr3L_9575001	RAL-911
999	chr3L	9929675	9929686	chr3L	9938460	9938487	roo	4	8796	4.0	5.5	4.8	0.7	8812	chr3L	9929675	intron	CG34356 +	chr3L	9934081	intron	CG34356 +	chr3L	9938487	intron	CG34356 +	chr3L_4_9930001	chr3L_9930001	RAL-911
1010	chr3L	10414938	10414978	chr3L	10417319	10417370	Doc	7	2380	0.0	5.5	2.8	1.8	2432	chr3L	10414938	intergenic	CG12362 +	chr3L	10416154	intergenic	not near genes	chr3L	10417370	intergenic	not near genes	chr3L_7_10415001	chr3L_10415001	RAL-911
1033	chr3L	11264456	11264491	chr3L	11271428	11271463	17.6	8	6970	2.0	5.5	3.8	1.7	7007	chr3L	11264456	intergenic	not near genes	chr3L	11267960	intergenic	not near genes	chr3L	11271463	intergenic	not near genes	chr3L_8_11265001	chr3L_11265001	RAL-911
1035	chr3L	11564793	11564814	chr3L	11572408	11572412	412	5	7607	1.0	0.0	0.5	3.3	7619	chr3L	11564793	exon	CG33267 +	chr3L	11568602	intron	CG33267 +	chr3L	11572412	exon	CG33267 +	chr3L_5_11565001	chr3L_11565001	RAL-911
1043	chr3L	11723069	11723115	chr3L	11727882	11727931	Doc	13	4814	2.5	4.0	3.2	3.1	4862	chr3L	11723069	3` UTR	Bmcp +	chr3L	11725500	intron	Bmcp +	chr3L	11727931	3` UTR	Bmcp +	chr3L_13_11725001	chr3L_11725001	RAL-911
1048	chr3L	11864575	11864580	chr3L	11865853	11865864	pogo	4	1288	0.5	3.0	1.8	1.4	1289	chr3L	11864575	intron	CG44837 -	chr3L	11865220	intron	CG44837 -	chr3L	11865864	intron	CG44837 -	chr3L_4_11865001	chr3L_11865001	RAL-911
1067	chr3L	12874912	12874963	chr3L	12877224	12877275	jockey	14	2308	3.0	7.0	5.0	2.3	2363	chr3L	12874912	intergenic	not near genes	chr3L	12876094	intergenic	not near genes	chr3L	12877275	intergenic	not near genes	chr3L_14_12875001	chr3L_12875001	RAL-911
1069	chr3L	12957778	12957816	chr3L	12962270	12962318	copia	6	4494	3.0	4.5	3.8	1.2	4540	chr3L	12957778	intergenic	not near genes	chr3L	12960048	intergenic	not near genes	chr3L	12962318	intergenic	not near genes	chr3L_6_12960001	chr3L_12960001	RAL-911
1086	chr3L	13804530	13804565	chr3L	13822836	13822845	roo	4	18297	5.0	4.5	4.8	0.7	18315	chr3L	13804530	intergenic	not near genes	chr3L	13813688	intergenic	not near genes	chr3L	13822845	intergenic	not near genes	chr3L_4_13810001	chr3L_13810001	RAL-911
1095	chr3L	14296006	14296010	chr3L	14296472	14296479	roo	6	485	0.5	4.0	2.2	1.9	473	chr3L	14296006	intron	fz +	chr3L	14296242	intron	fz +	chr3L	14296479	intron	fz +	chr3L_6_14295001	chr3L_14295001	RAL-911
1101	chr3L	14468428	14468474	chr3L	14473654	14473700	copia	14	5224	2.0	2.5	2.2	4.4	5272	chr3L	14468428	intron	bbg -	chr3L	14471064	intron	bbg -	chr3L	14473700	intron	bbg -	chr3L_14_14470001	chr3L_14470001	RAL-911
1104	chr3L	14524320	14524355	chr3L	14529102	14529139	F-element	4	4782	4.5	0.0	2.2	1.2	4819	chr3L	14524320	intron	bbg -	chr3L	14526730	intron	bbg -	chr3L	14529139	intron	bbg -	chr3L_4_14525001	chr3L_14525001	RAL-911
1111	chr3L	14725586	14725623	chr3L	14728600	14728633	Doc	6	3010	0.0	5.0	2.5	1.7	3047	chr3L	14725586	intron	ome +	chr3L	14727110	intron	ome +	chr3L	14728633	intron	ome +	chr3L_6_14725001	chr3L_14725001	RAL-911
1115	chr3L	14825141	14825156	chr3L	14832888	14832896	Stalker2	5	7746	2.0	8.0	5.0	0.8	7755	chr3L	14825141	intron	CG17839 +	chr3L	14829018	intron	CG17839 +	chr3L	14832896	intron	CG17839 +	chr3L_5_14825001	chr3L_14825001	RAL-911
1122	chr3L	14970751	14970761	chr3L	14971083	14971093	F-element	5	332	1.0	4.0	2.5	1.4	342	chr3L	14970751	intergenic	Tom +	chr3L	14970922	intergenic	not near genes	chr3L	14971093	intergenic	not near genes	chr3L_5_14970001	chr3L_14970001	RAL-911
1125	chr3L	15085030	15085079	chr3L	15086216	15086265	1360	6	1185	4.5	3.0	3.8	1.2	1235	chr3L	15085030	intron	cp309 -	chr3L	15085648	intron	cp309 -	chr3L	15086265	intron	cp309 -	chr3L_6_15085001	chr3L_15085001	RAL-911
1128	chr3L	15295750	15295786	chr3L	15298613	15298647	gypsy5	7	2863	7.5	4.0	5.8	1.0	2897	chr3L	15295750	intergenic	not near genes	chr3L	15297198	intergenic	not near genes	chr3L	15298647	intergenic	Best4 +	chr3L_7_15295001	chr3L_15295001	RAL-911
1133	chr3L	15423746	15423774	chr3L	15426610	15426638	opus	5	2864	8.0	5.0	6.5	0.7	2892	chr3L	15423746	intergenic	not near genes	chr3L	15425192	intergenic	not near genes	chr3L	15426638	intergenic	not near genes	chr3L_5_15425001	chr3L_15425001	RAL-911
1149	chr3L	16184089	16184128	chr3L	16188928	16188967	X-element	11	4839	2.0	2.0	2.0	3.7	4878	chr3L	16184089	intergenic	not near genes	chr3L	16186528	intergenic	not near genes	chr3L	16188967	intergenic	not near genes	chr3L_11_16185001	chr3L_16185001	RAL-911
1151	chr3L	16443838	16443867	chr3L	16446198	16446212	Doc	6	2351	3.0	1.5	2.2	1.9	2374	chr3L	16443838	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445025	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446212	intron,intron	CG33158 +,dsx-c73A -	chr3L_6_16445001	chr3L_16445001	RAL-911
1156	chr3L	16616494	16616527	chr3L	16621841	16621872	297	8	5345	5.0	4.5	4.8	1.4	5378	chr3L	16616494	3` UTR	Abl -	chr3L	16619183	3` UTR	Abl -	chr3L	16621872	3` UTR	Abl -	chr3L_8_16615001	chr3L_16615001	RAL-911
1157	chr3L	16684003	16684038	chr3L	16689244	16689279	copia	9	5241	5.5	5.0	5.2	1.5	5276	chr3L	16684003	intron,intron	Lasp -,CG43954 -	chr3L	16686641	intron,intron	Lasp -,CG43954 -	chr3L	16689279	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_9_16685001	chr3L_16685001	RAL-911
1164	chr3L	17034929	17034966	chr3L	17035137	17035171	G2	11	208	0.5	4.5	2.5	3.1	242	chr3L	17034929	intergenic	not near genes	chr3L	17035050	intergenic	not near genes	chr3L	17035171	intergenic	beg +	chr3L_11_17035001	chr3L_17035001	RAL-911
1165	chr3L	17084988	17085030	chr3L	17094157	17094199	roo	16	9168	6.5	6.0	6.2	2.2	9211	chr3L	17084988	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094199	intron	Rbp6 -	chr3L_16_17085001	chr3L_17085001	RAL-911
1177	chr3L	17730829	17730877	chr3L	17738179	17738227	mdg1	14	7347	9.0	3.5	6.2	1.9	7398	chr3L	17730829	intron	Ccn +	chr3L	17734528	intron	Ccn +	chr3L	17738227	intron	Ccn +	chr3L_14_17730001	chr3L_17730001	RAL-911
1182	chr3L	17799789	17799831	chr3L	17801596	17801638	S-element	15	1805	3.0	5.0	4.0	3.0	1849	chr3L	17799789	intron	NUCB1 -	chr3L	17800714	intron	NUCB1 -	chr3L	17801638	intron	NUCB1 -	chr3L_15_17800001	chr3L_17800001	RAL-911
1186	chr3L	17918353	17918401	chr3L	17921176	17921224	opus	7	2823	2.0	3.0	2.5	2.0	2871	chr3L	17918353	intergenic	not near genes	chr3L	17919788	intergenic	not near genes	chr3L	17921224	intergenic	not near genes	chr3L_7_17915001	chr3L_17915001	RAL-911
1191	chr3L	18047691	18047705	chr3L	18056768	18056782	roo	6	9077	7.0	7.0	7.0	0.8	9091	chr3L	18047691	intron	Eip75B -	chr3L	18052236	intron	Eip75B -	chr3L	18056782	intron	Eip75B -	chr3L_6_18050001	chr3L_18050001	RAL-911
1192	chr3L	18047720	18047735	chr3L	18056797	18056807	roo	5	9076	2.0	15.0	8.5	0.5	9087	chr3L	18047720	intron	Eip75B -	chr3L	18052264	intron	Eip75B -	chr3L	18056807	intron	Eip75B -	chr3L_5_18050001	chr3L_18050001	RAL-911
1211	chr3L	18506140	18506160	chr3L	18509598	18509643	F-element	6	3477	1.5	6.0	3.8	1.2	3503	chr3L	18506140	intergenic	not near genes	chr3L	18507892	intergenic	not near genes	chr3L	18509643	intergenic	not near genes	chr3L_6_18505001	chr3L_18505001	RAL-911
1212	chr3L	18514893	18514941	chr3L	18520099	18520111	BS	9	5202	6.0	2.5	4.2	1.7	5218	chr3L	18514893	intergenic	not near genes	chr3L	18517502	intergenic	not near genes	chr3L	18520111	intergenic	not near genes	chr3L_9_18515001	chr3L_18515001	RAL-911
1213	chr3L	18528615	18528660	chr3L	18537796	18537828	roo	10	9176	4.0	4.0	4.0	2.0	9213	chr3L	18528615	intergenic	not near genes	chr3L	18533222	intergenic	not near genes	chr3L	18537828	intergenic	not near genes	chr3L_10_18530001	chr3L_18530001	RAL-911
1217	chr3L	18710778	18710792	chr3L	18718748	18718762	Stalker2	7	7970	3.5	2.5	3.0	1.8	7984	chr3L	18710778	intergenic	not near genes	chr3L	18714770	intergenic	not near genes	chr3L	18718762	intergenic	not near genes	chr3L_7_18710001	chr3L_18710001	RAL-911
1220	chr3L	18772395	18772439	chr3L	18781096	18781140	roo	14	8699	2.5	0.5	1.5	5.6	8745	chr3L	18772395	intron	ftz-f1 -	chr3L	18776768	intron	ftz-f1 -	chr3L	18781140	intron	ftz-f1 -	chr3L_14_18775001	chr3L_18775001	RAL-911
1232	chr3L	19117035	19117071	chr3L	19124496	19124508	mdg1	4	7458	4.5	3.5	4.0	0.8	7473	chr3L	19117035	intron	CG14082 -	chr3L	19120772	intron	CG14082 -	chr3L	19124508	intron	CG14082 -	chr3L_4_19120001	chr3L_19120001	RAL-911
1236	chr3L	19208052	19208080	chr3L	19209431	19209450	Doc	4	1383	2.5	2.0	2.2	1.2	1398	chr3L	19208052	intron	fz2 -	chr3L	19208751	intron	fz2 -	chr3L	19209450	intron	fz2 -	chr3L_4_19205001	chr3L_19205001	RAL-911
1247	chr3L	19820282	19820313	chr3L	19827848	19827878	412	14	7566	2.5	2.0	2.2	4.4	7596	chr3L	19820282	intron	Deaf1 +	chr3L	19824080	intron	Deaf1 +	chr3L	19827878	intron	Deaf1 +	chr3L_14_19820001	chr3L_19820001	RAL-911
1248	chr3L	19848487	19848531	chr3L	19857697	19857720	roo	11	9202	3.0	7.5	5.2	1.8	9233	chr3L	19848487	intron	Papss +	chr3L	19853104	intron	Papss +	chr3L	19857720	intron	Papss +	chr3L_11_19850001	chr3L_19850001	RAL-911
1249	chr3L	19861813	19861850	chr3L	19863617	19863658	S-element	7	1801	4.0	4.0	4.0	1.4	1845	chr3L	19861813	5` UTR	CR45433 +	chr3L	19862736	intergenic	not near genes	chr3L	19863658	intergenic	not near genes	chr3L_7_19860001	chr3L_19860001	RAL-911
1253	chr3L	20113640	20113682	chr3L	20122917	20122959	roo	11	9276	6.0	5.0	5.5	1.7	9319	chr3L	20113640	intergenic	not near genes	chr3L	20118300	intergenic	not near genes	chr3L	20122959	intergenic	not near genes	chr3L_11_20115001	chr3L_20115001	RAL-911
1258	chr3L	20476735	20476784	chr3L	20484354	20484403	springer	13	7618	2.0	5.0	3.5	2.9	7668	chr3L	20476735	3` UTR	isoQC +	chr3L	20480569	intergenic	not near genes	chr3L	20484403	3` UTR	ZnT77C -	chr3L_13_20480001	chr3L_20480001	RAL-911
1268	chr3L	21151854	21151891	chr3L	21156948	21156995	flea	7	5102	1.0	6.0	3.5	1.6	5141	chr3L	21151854	intron	Ac78C -	chr3L	21154424	intron	Ac78C -	chr3L	21156995	intron	Ac78C -	chr3L_7_21150001	chr3L_21150001	RAL-911
1270	chr3L	21306131	21306178	chr3L	21315308	21315351	roo	15	9177	3.0	2.5	2.8	3.9	9220	chr3L	21306131	3` UTR	CG7632 +	chr3L	21310741	intron	Pc -	chr3L	21315351	3` UTR	Pc -	chr3L_15_21310001	chr3L_21310001	RAL-911
1273	chr3L	21372703	21372715	chr3L	21379231	21379243	McClintock	4	6526	7.0	3.5	5.2	0.6	6540	chr3L	21372703	intergenic	not near genes	chr3L	21375973	intergenic	not near genes	chr3L	21379243	intergenic	not near genes	chr3L_4_21375001	chr3L_21375001	RAL-911
1274	chr3L	21372716	21372729	chr3L	21379229	21379255	McClintock	8	6526	6.5	3.5	5.0	1.3	6539	chr3L	21372716	intergenic	not near genes	chr3L	21375986	intergenic	not near genes	chr3L	21379255	intergenic	not near genes	chr3L_8_21375001	chr3L_21375001	RAL-911
1291	chr3L	22099664	22099705	chr3L	22105863	22105911	3S18	16	6205	3.5	8.0	5.8	2.4	6247	chr3L	22099664	intergenic	not near genes	chr3L	22102788	intergenic	not near genes	chr3L	22105911	intergenic	not near genes	chr3L_16_22100001	chr3L_22100001	RAL-911
1296	chr3L	22555776	22555798	chr3L	22563243	22563265	blood	5	7472	4.0	0.0	2.0	1.7	7489	chr3L	22555776	intergenic	not near genes	chr3L	22559520	intergenic	not near genes	chr3L	22563265	intergenic	not near genes	chr3L_5_22555001	chr3L_22555001	RAL-911
1297	chr3L	22617175	22617219	chr3L	22624647	22624691	blood	10	7471	2.0	1.5	1.8	3.6	7516	chr3L	22617175	intron	CG14459 -	chr3L	22620933	intron	CG14459 -	chr3L	22624691	intron	CG14459 -	chr3L_10_22620001	chr3L_22620001	RAL-911
1299	chr3L	22761373	22761408	chr3L	22766826	22766855	Ivk	11	5450	5.0	4.5	4.8	1.9	5482	chr3L	22761373	intron	SPoCk +	chr3L	22764114	intron	SPoCk +	chr3L	22766855	intron	SPoCk +	chr3L_11_22760001	chr3L_22760001	RAL-911
1301	chr3L	22865974	22866001	chr3L	22867127	22867153	Doc	7	1152	4.5	6.0	5.2	1.1	1179	chr3L	22865974	intron	CG33170 +	chr3L	22866564	intron	CG33170 +	chr3L	22867153	intron	CG33170 +	chr3L_7_22865001	chr3L_22865001	RAL-911
1309	chr3L	22989873	22989892	chr3L	22996838	22996886	297	5	6986	2.0	2.5	2.2	1.6	7013	chr3L	22989873	intergenic	not near genes	chr3L	22993380	intergenic	not near genes	chr3L	22996886	intergenic	not near genes	chr3L_5_22990001	chr3L_22990001	RAL-911
1311	chr3L	24021256	24021313	chr3L	24022433	24022466	1360	9	1172	3.0	5.0	4.0	1.8	1210	chr3L	24021256	intergenic	not near genes	chr3L	24021861	intergenic	not near genes	chr3L	24022466	intergenic	not near genes	chr3L_9_24020001	chr3L_24020001	RAL-911
1324	chr3L	27356101	27356108	chr3L	27357320	27357322	1360	5	1217	5.5	5.5	5.5	0.8	1221	chr3L	27356101	intron	Dbp80 +	chr3L	27356712	intron	Dbp80 +	chr3L	27357322	intron	Dbp80 +	chr3L_5_27355001	chr3L_27355001	RAL-911
1325	chr3L	27980682	27980692	chr3L	27985500	27985510	Doc	6	4818	5.5	6.0	5.8	0.9	4828	chr3L	27980682	intron	CG17514 -	chr3L	27983096	intron	CG17514 -	chr3L	27985510	intron	CG17514 -	chr3L_6_27980001	chr3L_27980001	RAL-911
1332	chr3R	4105021	4105066	chr3R	4110245	4110280	copia	10	5220	3.5	1.5	2.5	2.9	5259	chr3R	4105021	intergenic	not near genes	chr3R	4107650	intergenic	not near genes	chr3R	4110280	intergenic	not near genes	chr3R_10_4105001	chr3R_4105001	RAL-911
1334	chr3R	4206057	4206100	chr3R	4211652	4211682	mdg3	9	5590	3.5	4.5	4.0	1.8	5625	chr3R	4206057	intron	CG14636 -	chr3R	4208870	intron	CG14636 -	chr3R	4211682	intron	CG14636 -	chr3R_9_4205001	chr3R_4205001	RAL-911
1335	chr3R	4366742	4366751	chr3R	4375145	4375154	roo	4	8403	9.5	2.5	6.0	0.6	8412	chr3R	4366742	3` UTR	CG1090 +	chr3R	4370948	intergenic	not near genes	chr3R	4375154	5` UTR	CR44922 +	chr3R_4_4370001	chr3R_4370001	RAL-911
1336	chr3R	4366753	4366788	chr3R	4375140	4375191	roo	10	8398	4.0	1.5	2.8	2.6	8438	chr3R	4366753	3` UTR	CG1090 +	chr3R	4370972	intergenic	not near genes	chr3R	4375191	5` UTR	CR44922 +	chr3R_10_4370001	chr3R_4370001	RAL-911
1337	chr3R	4408397	4408444	chr3R	4412716	4412716	Juan	7	4310	10.5	7.5	9.0	0.7	4319	chr3R	4408397	intron	CG32944 -	chr3R	4410556	intron	CG32944 -	chr3R	4412716	intron	CG32944 -	chr3R_7_4410001	chr3R_4410001	RAL-911
1339	chr3R	4609528	4609583	chr3R	4610712	4610731	1360	19	1178	5.0	4.5	4.8	3.3	1203	chr3R	4609528	intergenic	not near genes	chr3R	4610130	intergenic	not near genes	chr3R	4610731	intergenic	not near genes	chr3R_19_4610001	chr3R_4610001	RAL-911
1343	chr3R	4753224	4753279	chr3R	4757547	4757555	F-element	8	4307	1.5	2.5	2.0	2.7	4331	chr3R	4753224	intron,intron	atms +,CG44098 -	chr3R	4755390	intron,intron	atms +,CG44098 -	chr3R	4757555	intron,exon	atms +,CG44098 -	chr3R_8_4755001	chr3R_4755001	RAL-911
1345	chr3R	4887458	4887495	chr3R	4894854	4894857	rover	4	7382	1.5	1.5	1.5	1.6	7399	chr3R	4887458	intergenic	not near genes	chr3R	4891158	intergenic	not near genes	chr3R	4894857	intergenic	not near genes	chr3R_4_4890001	chr3R_4890001	RAL-911
1351	chr3R	5045826	5045869	chr3R	5052948	5052991	HMS-Beagle	9	7122	4.0	2.0	3.0	2.2	7165	chr3R	5045826	3` UTR	CR43635 -	chr3R	5049408	intergenic	not near genes	chr3R	5052991	intergenic	CR45588 -	chr3R_9_5045001	chr3R_5045001	RAL-911
1352	chr3R	5067962	5068013	chr3R	5073499	5073547	mdg3	26	5535	4.0	3.5	3.8	5.4	5585	chr3R	5067962	intergenic	not near genes	chr3R	5070754	intergenic	not near genes	chr3R	5073547	intergenic	not near genes	chr3R_26_5070001	chr3R_5070001	RAL-911
1355	chr3R	5338380	5338427	chr3R	5343577	5343598	Rt1c	7	5192	4.0	2.5	3.2	1.7	5218	chr3R	5338380	intron	mtd -	chr3R	5340989	intron	mtd -	chr3R	5343598	intron	mtd -	chr3R_7_5340001	chr3R_5340001	RAL-911
1358	chr3R	5445961	5445984	chr3R	5452430	5452464	Burdock	7	6478	4.0	4.5	4.2	1.3	6503	chr3R	5445961	intron	CG14669 +	chr3R	5449212	intron	CG14669 +	chr3R	5452464	intron	CG14669 +	chr3R_7_5445001	chr3R_5445001	RAL-911
1363	chr3R	5745996	5746038	chr3R	5746257	5746299	pogo	4	258	2.5	2.5	2.5	1.1	303	chr3R	5745996	3` UTR	Madm +	chr3R	5746148	3` UTR	Madm +	chr3R	5746299	3` UTR	Madm +	chr3R_4_5745001	chr3R_5745001	RAL-911
1364	chr3R	5746996	5747032	chr3R	5753207	5753243	diver	12	6208	3.5	4.5	4.0	2.4	6247	chr3R	5746996	intergenic	Madm +	chr3R	5750120	intergenic	not near genes	chr3R	5753243	intergenic	CG2091 -	chr3R_12_5750001	chr3R_5750001	RAL-911
1365	chr3R	5809094	5809142	chr3R	5809355	5809398	pogo	11	256	2.5	5.5	4.0	2.2	304	chr3R	5809094	3` UTR	CG11000 +	chr3R	5809246	3` UTR	CG11000 +	chr3R	5809398	3` UTR	CG11000 +	chr3R_11_5805001	chr3R_5805001	RAL-911
1366	chr3R	5822367	5822403	chr3R	5823554	5823590	1360	8	1185	5.5	0.5	3.0	2.0	1223	chr3R	5822367	3` UTR	CG2023 -	chr3R	5822978	3` UTR	CG2023 -	chr3R	5823590	3` UTR	CG2023 -	chr3R_8_5820001	chr3R_5820001	RAL-911
1367	chr3R	5927570	5927572	chr3R	5927801	5927826	pogo	4	251	5.0	4.0	4.5	0.7	256	chr3R	5927570	intron	CG34113 -	chr3R	5927698	intron	CG34113 -	chr3R	5927826	intron	CG34113 -	chr3R_4_5925001	chr3R_5925001	RAL-911
1372	chr3R	6175157	6175195	chr3R	6182447	6182487	HMS-Beagle2	7	7291	2.0	2.0	2.0	2.3	7330	chr3R	6175157	intergenic	Osi1 +	chr3R	6178822	intron	CR45194 +	chr3R	6182487	intergenic	CR45194 +	chr3R_7_6175001	chr3R_6175001	RAL-911
1376	chr3R	6510014	6510042	chr3R	6515114	6515143	jockey	9	5100	5.5	2.0	3.8	1.9	5129	chr3R	6510014	intergenic	not near genes	chr3R	6512578	intergenic	not near genes	chr3R	6515143	intergenic	not near genes	chr3R_9_6510001	chr3R_6510001	RAL-911
1400	chr3R	7694557	7694607	chr3R	7713638	7713687	invader3	15	19081	5.0	2.5	3.8	3.1	19130	chr3R	7694557	3` UTR	Nlg1 +	chr3R	7704122	intergenic	not near genes	chr3R	7713687	intergenic	not near genes	chr3R_15_7700001	chr3R_7700001	RAL-911
1401	chr3R	7729472	7729498	chr3R	7737430	7737456	Stalker2	4	7954	1.5	8.5	5.0	0.7	7984	chr3R	7729472	intergenic	not near genes	chr3R	7733464	intergenic	not near genes	chr3R	7737456	intergenic	not near genes	chr3R_4_7730001	chr3R_7730001	RAL-911
1403	chr3R	7973300	7973341	chr3R	7974382	7974423	1360	26	1082	4.5	5.5	5.0	4.3	1123	chr3R	7973300	intergenic	not near genes	chr3R	7973862	intergenic	not near genes	chr3R	7974423	3` UTR	CD98hc -	chr3R_26_7970001	chr3R_7970001	RAL-911
1406	chr3R	8094394	8094437	chr3R	8099719	8099762	Transpac	12	5325	3.0	3.5	3.2	2.9	5368	chr3R	8094394	intron	CG7900 +	chr3R	8097078	intron	CG7900 +	chr3R	8099762	intron	CG7900 +	chr3R_12_8095001	chr3R_8095001	RAL-911
1407	chr3R	8101762	8101768	chr3R	8104864	8104872	G2	4	3102	2.0	6.5	4.2	0.8	3110	chr3R	8101762	exon	CG7900 +	chr3R	8103317	intron	CG7900 +	chr3R	8104872	3` UTR	CG7900 +	chr3R_4_8100001	chr3R_8100001	RAL-911
1408	chr3R	8101779	8101790	chr3R	8104859	8104865	G2	4	3088	1.0	4.5	2.8	1.1	3086	chr3R	8101779	exon	CG7900 +	chr3R	8103322	intron	CG7900 +	chr3R	8104865	3` UTR	CG7900 +	chr3R_4_8100001	chr3R_8100001	RAL-911
1409	chr3R	8207541	8207581	chr3R	8208406	8208435	F-element	4	856	1.5	5.0	3.2	1.0	894	chr3R	8207541	intergenic	not near genes	chr3R	8207988	intergenic	not near genes	chr3R	8208435	intergenic	not near genes	chr3R_4_8205001	chr3R_8205001	RAL-911
1413	chr3R	8707346	8707384	chr3R	8709797	8709820	jockey	10	2453	2.0	2.0	2.0	3.3	2474	chr3R	8707346	intergenic	not near genes	chr3R	8708583	intergenic	not near genes	chr3R	8709820	intergenic	not near genes	chr3R_10_8705001	chr3R_8705001	RAL-911
1421	chr3R	9319564	9319601	chr3R	9320019	9320045	jockey	6	453	3.0	7.5	5.2	1.0	481	chr3R	9319564	intron	CG8861 -	chr3R	9319804	intron	CG8861 -	chr3R	9320045	intron	CG8861 -	chr3R_6_9315001	chr3R_9315001	RAL-911
1424	chr3R	9361823	9361845	chr3R	9362067	9362106	pogo	5	258	2.5	5.0	3.8	1.0	283	chr3R	9361823	3` UTR	CG45050 +	chr3R	9361964	3` UTR	CG45050 +	chr3R	9362106	3` UTR	CG45050 +	chr3R_5_9360001	chr3R_9360001	RAL-911
1433	chr3R	10231770	10231808	chr3R	10237357	10237383	mdg3	9	5590	4.5	3.5	4.0	1.8	5613	chr3R	10231770	intron	CG42795 +	chr3R	10234576	intron	CG42795 +	chr3R	10237383	intron	CG42795 +	chr3R_9_10230001	chr3R_10230001	RAL-911
1434	chr3R	10255363	10255382	chr3R	10260823	10260842	I-element	4	5457	11.0	3.0	7.0	0.5	5479	chr3R	10255363	3` UTR	Sirt6 -	chr3R	10258102	intron	Sirt6 -	chr3R	10260842	exon	Sirt6 -	chr3R_4_10255001	chr3R_10255001	RAL-911
1457	chr3R	11379227	11379252	chr3R	11388402	11388427	roo	5	9172	3.0	3.0	3.0	1.2	9200	chr3R	11379227	intron	pros +	chr3R	11383827	intron	pros +	chr3R	11388427	intron	pros +	chr3R_5_11380001	chr3R_11380001	RAL-911
1463	chr3R	11957838	11957871	chr3R	11958141	11958174	S-element	6	301	5.0	1.0	3.0	1.5	336	chr3R	11957838	intergenic	not near genes	chr3R	11958006	intergenic	not near genes	chr3R	11958174	intergenic	not near genes	chr3R_6_11955001	chr3R_11955001	RAL-911
1464	chr3R	12022865	12022915	chr3R	12025062	12025111	pogo	9	2190	3.5	2.5	3.0	2.2	2246	chr3R	12022865	intergenic	not near genes	chr3R	12023988	intergenic	not near genes	chr3R	12025111	intergenic	not near genes	chr3R_9_12020001	chr3R_12020001	RAL-911
1472	chr3R	12864546	12864590	chr3R	12865051	12865095	roo	9	505	2.5	4.0	3.2	2.1	549	chr3R	12864546	intergenic	not near genes	chr3R	12864820	intergenic	not near genes	chr3R	12865095	intergenic	not near genes	chr3R_9_12860001	chr3R_12860001	RAL-911
1480	chr3R	13314104	13314124	chr3R	13318912	13318931	Doc	5	4808	4.5	6.5	5.5	0.8	4827	chr3R	13314104	intergenic	not near genes	chr3R	13316518	intergenic	not near genes	chr3R	13318931	intergenic	CG45080 -	chr3R_5_13315001	chr3R_13315001	RAL-911
1485	chr3R	13517207	13517249	chr3R	13520043	13520086	jockey	8	2833	5.5	0.0	2.8	2.1	2879	chr3R	13517207	intergenic	not near genes	chr3R	13518646	intergenic	not near genes	chr3R	13520086	intergenic	not near genes	chr3R_8_13515001	chr3R_13515001	RAL-911
1495	chr3R	14021619	14021662	chr3R	14023464	14023507	S-element	16	1842	6.5	3.0	4.8	2.8	1888	chr3R	14021619	intron	rdx -	chr3R	14022563	intron	rdx -	chr3R	14023507	intron	rdx -	chr3R_16_14020001	chr3R_14020001	RAL-911
1498	chr3R	14246385	14246418	chr3R	14247898	14247928	jockey	4	1514	3.5	5.5	4.5	0.7	1543	chr3R	14246385	intergenic	not near genes	chr3R	14247156	intergenic	not near genes	chr3R	14247928	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-911
1503	chr3R	15041408	15041429	chr3R	15045196	15045209	Doc	7	3786	0.0	5.0	2.5	2.0	3801	chr3R	15041408	intergenic	not near genes	chr3R	15043308	intergenic	not near genes	chr3R	15045209	intergenic	not near genes	chr3R_7_15040001	chr3R_15040001	RAL-911
1504	chr3R	15059260	15059481	chr3R	15059474	15059588	BS	14	160	0.0	0.0	0.0	14.0	328	chr3R	15059260	intron	dpr9 -	chr3R	15059424	intron	dpr9 -	chr3R	15059588	intron	dpr9 -	chr3R_14_15055001	chr3R_15055001	RAL-911
1506	chr3R	15079793	15079799	chr3R	15080054	15080059	pogo	5	261	10.5	5.0	7.8	0.6	266	chr3R	15079793	3` UTR	CG6966 -	chr3R	15079926	3` UTR	CG6966 -	chr3R	15080059	3` UTR	CG6966 -	chr3R_5_15075001	chr3R_15075001	RAL-911
1507	chr3R	15079804	15079838	chr3R	15080049	15080099	pogo	8	257	2.0	4.0	3.0	2.0	295	chr3R	15079804	3` UTR	CG6966 -	chr3R	15079952	3` UTR	CG6966 -	chr3R	15080099	3` UTR	CG6966 -	chr3R_8_15075001	chr3R_15075001	RAL-911
1508	chr3R	15102477	15102526	chr3R	15109752	15109797	412	16	7275	8.0	5.5	6.8	2.1	7320	chr3R	15102477	intron	CG42788 -	chr3R	15106137	intron	CG42788 -	chr3R	15109797	intron	CG42788 -	chr3R_16_15105001	chr3R_15105001	RAL-911
1511	chr3R	15132041	15132073	chr3R	15135121	15135153	Juan	6	3080	3.5	4.5	4.0	1.2	3112	chr3R	15132041	intergenic	CG42788 -	chr3R	15133597	intergenic	not near genes	chr3R	15135153	3` UTR	CG6912 -	chr3R_6_15130001	chr3R_15130001	RAL-911
1517	chr3R	15601151	15601195	chr3R	15608693	15608736	412	11	7537	5.0	2.5	3.8	2.3	7585	chr3R	15601151	intergenic	not near genes	chr3R	15604944	intergenic	not near genes	chr3R	15608736	intergenic	not near genes	chr3R_11_15600001	chr3R_15600001	RAL-911
1525	chr3R	16189409	16189440	chr3R	16189826	16189856	invader4	8	421	5.5	11.0	8.2	0.9	447	chr3R	16189409	intron	sra +	chr3R	16189632	intron	sra +	chr3R	16189856	intron	sra +	chr3R_8_16185001	chr3R_16185001	RAL-911
1531	chr3R	17294645	17294670	chr3R	17295093	17295108	BS	6	446	4.0	0.0	2.0	2.0	463	chr3R	17294645	intergenic	not near genes	chr3R	17294876	intergenic	not near genes	chr3R	17295108	intergenic	not near genes	chr3R_6_17290001	chr3R_17290001	RAL-911
1532	chr3R	17346676	17346712	chr3R	17348259	17348294	F-element	9	1583	4.0	3.0	3.5	2.0	1618	chr3R	17346676	intron	beat-IIa -	chr3R	17347485	intron	beat-IIa -	chr3R	17348294	intron	beat-IIa -	chr3R_9_17345001	chr3R_17345001	RAL-911
1537	chr3R	17591281	17591312	chr3R	17591724	17591768	F-element	4	453	3.5	3.5	3.5	0.9	487	chr3R	17591281	intergenic	not near genes	chr3R	17591524	intergenic	not near genes	chr3R	17591768	intergenic	not near genes	chr3R_4_17590001	chr3R_17590001	RAL-911
1538	chr3R	17638307	17638345	chr3R	17638811	17638851	roo	21	505	5.0	7.0	6.0	3.0	544	chr3R	17638307	intron	CG43175 +	chr3R	17638579	intron	CG43175 +	chr3R	17638851	intron,intron	CG43175 +,CR45222 +	chr3R_21_17635001	chr3R_17635001	RAL-911
1540	chr3R	17657651	17657661	chr3R	17657820	17657829	INE-1	4	170	0.0	9.0	4.5	0.7	178	chr3R	17657651	intron	CG14322 +	chr3R	17657740	intron	CG14322 +	chr3R	17657829	intron	CG14322 +	chr3R_4_17655001	chr3R_17655001	RAL-911
1548	chr3R	18061575	18061608	chr3R	18063159	18063196	F-element	19	1585	2.5	5.0	3.8	4.0	1621	chr3R	18061575	intergenic	not near genes	chr3R	18062386	intergenic	not near genes	chr3R	18063196	intergenic	not near genes	chr3R_19_18060001	chr3R_18060001	RAL-911
1551	chr3R	18331764	18331769	chr3R	18333278	18333283	hopper2	6	1514	7.0	5.0	6.0	0.9	1519	chr3R	18331764	3` UTR	CG15803 -	chr3R	18332524	intron	CG15803 -	chr3R	18333283	3` UTR	CG15803 -	chr3R_6_18330001	chr3R_18330001	RAL-911
1560	chr3R	18606504	18606518	chr3R	18610755	18610770	F-element	7	4251	5.5	10.5	8.0	0.8	4266	chr3R	18606504	intron,intron	qin +,CG14304 -	chr3R	18608637	intron,intron	qin +,CG14304 -	chr3R	18610770	intron,intron	qin +,CG14304 -	chr3R_7_18605001	chr3R_18605001	RAL-911
1561	chr3R	18606520	18606527	chr3R	18610742	18610779	F-element	4	4244	2.5	7.5	5.0	0.7	4259	chr3R	18606520	intron,intron	qin +,CG14304 -	chr3R	18608650	intron,intron	qin +,CG14304 -	chr3R	18610779	intron,intron	qin +,CG14304 -	chr3R_4_18605001	chr3R_18605001	RAL-911
1574	chr3R	19136424	19136440	chr3R	19139799	19139806	Bari1	4	3368	24.5	28.0	26.2	0.1	3382	chr3R	19136424	exon	Cyp12a4 +	chr3R	19138115	intergenic	not near genes	chr3R	19139806	3` UTR	Ppcs -	chr3R_4_19135001	chr3R_19135001	RAL-911
1591	chr3R	20109517	20109568	chr3R	20114743	20114793	copia	12	5224	1.0	3.0	2.0	4.0	5276	chr3R	20109517	intergenic	not near genes	chr3R	20112155	intergenic	not near genes	chr3R	20114793	intergenic	CG10887 +	chr3R_12_20110001	chr3R_20110001	RAL-911
1594	chr3R	20266497	20266548	chr3R	20272986	20273019	Burdock	13	6488	1.0	5.0	3.0	3.2	6522	chr3R	20266497	intron	cic +	chr3R	20269758	intron	cic +	chr3R	20273019	intron	cic +	chr3R_13_20265001	chr3R_20265001	RAL-911
1597	chr3R	20330978	20331029	chr3R	20331484	20331535	roo	22	505	4.0	5.5	4.8	3.8	557	chr3R	20330978	intergenic	Sirt2 +	chr3R	20331256	intergenic	Sirt2 +	chr3R	20331535	intergenic	not near genes	chr3R_22_20330001	chr3R_20330001	RAL-911
1599	chr3R	20512971	20513032	chr3R	20515705	20515755	opus	12	2726	0.0	3.5	1.8	4.3	2784	chr3R	20512971	intergenic	not near genes	chr3R	20514363	intergenic	not near genes	chr3R	20515755	intergenic	not near genes	chr3R_12_20510001	chr3R_20510001	RAL-911
1633	chr3R	22234662	22234711	chr3R	22236001	22236028	pogo	11	1327	3.5	1.5	2.5	3.1	1366	chr3R	22234662	intron	SKIP +	chr3R	22235345	intron	SKIP +	chr3R	22236028	intron	SKIP +	chr3R_11_22235001	chr3R_22235001	RAL-911
1634	chr3R	22239471	22239524	chr3R	22248551	22248592	roo	7	9071	6.0	0.0	3.0	1.8	9121	chr3R	22239471	intron	SKIP +	chr3R	22244032	intron	SKIP +	chr3R	22248592	intron	SKIP +	chr3R_7_22240001	chr3R_22240001	RAL-911
1637	chr3R	22450525	22450576	chr3R	22453185	22453194	NOF	5	2648	1.5	2.5	2.0	1.7	2669	chr3R	22450525	intron	CG34376 +	chr3R	22451860	intron	CG34376 +	chr3R	22453194	intron	CG34376 +	chr3R_5_22450001	chr3R_22450001	RAL-911
1641	chr3R	22881196	22881228	chr3R	22884899	22884949	Doc	5	3720	1.5	1.0	1.2	2.3	3753	chr3R	22881196	intergenic	not near genes	chr3R	22883072	intergenic	not near genes	chr3R	22884949	intergenic	not near genes	chr3R_5_22880001	chr3R_22880001	RAL-911
1652	chr3R	23558380	23558416	chr3R	23560180	23560217	Bari1	13	1800	2.5	1.0	1.8	4.6	1837	chr3R	23558380	intron	beat-IV +	chr3R	23559298	intron	beat-IV +	chr3R	23560217	intron	beat-IV +	chr3R_13_23555001	chr3R_23555001	RAL-911
1659	chr3R	23835389	23835428	chr3R	23844559	23844598	roo	11	9167	6.5	6.0	6.2	1.5	9209	chr3R	23835389	intron	CG34355 +	chr3R	23839994	intron	CG34355 +	chr3R	23844598	intron	CG34355 +	chr3R_11_23835001	chr3R_23835001	RAL-911
1660	chr3R	23851069	23851075	chr3R	23858756	23858762	opus	4	7687	5.0	7.0	6.0	0.6	7693	chr3R	23851069	3` UTR	CG34355 +	chr3R	23854916	intergenic	not near genes	chr3R	23858762	intergenic	not near genes	chr3R_4_23850001	chr3R_23850001	RAL-911
1663	chr3R	24076901	24076940	chr3R	24078387	24078421	hobo	4	1483	4.0	2.0	3.0	1.0	1520	chr3R	24076901	intron	4EHP -	chr3R	24077661	intron	4EHP -	chr3R	24078421	intron	4EHP -	chr3R_4_24075001	chr3R_24075001	RAL-911
1671	chr3R	24493264	24493301	chr3R	24493513	24493514	BS	7	239	4.0	2.5	3.2	1.7	250	chr3R	24493264	intergenic	not near genes	chr3R	24493389	intergenic	not near genes	chr3R	24493514	intergenic	not near genes	chr3R_7_24490001	chr3R_24490001	RAL-911
1679	chr3R	24927116	24927152	chr3R	24931920	24931926	Doc	8	4800	6.5	1.5	4.0	1.6	4810	chr3R	24927116	intergenic	Trf4-2 +	chr3R	24929521	intergenic	not near genes	chr3R	24931926	intergenic	CG11771 +	chr3R_8_24925001	chr3R_24925001	RAL-911
1697	chr3R	25725807	25725844	chr3R	25734987	25735022	roo	10	9178	4.0	4.0	4.0	2.0	9215	chr3R	25725807	intron	LpR2 -	chr3R	25730414	intron	LpR2 -	chr3R	25735022	intron	LpR2 -	chr3R_10_25730001	chr3R_25730001	RAL-911
1710	chr3R	26376313	26376344	chr3R	26385493	26385503	roo	4	9175	4.0	1.5	2.8	1.1	9190	chr3R	26376313	intergenic	not near genes	chr3R	26380908	intergenic	not near genes	chr3R	26385503	intergenic	not near genes	chr3R_4_26380001	chr3R_26380001	RAL-911
1712	chr3R	26510533	26510535	chr3R	26519578	26519597	roo	4	9053	1.0	4.0	2.5	1.1	9064	chr3R	26510533	intron	plum -	chr3R	26515065	intron	plum -	chr3R	26519597	intron,5` UTR	plum -,CR45226 +	chr3R_4_26515001	chr3R_26515001	RAL-911
1714	chr3R	26642732	26642756	chr3R	26643145	26643157	jockey	4	410	3.0	8.5	5.8	0.6	425	chr3R	26642732	intergenic	not near genes	chr3R	26642944	intergenic	not near genes	chr3R	26643157	intergenic	not near genes	chr3R_4_26640001	chr3R_26640001	RAL-911
1720	chr3R	27007389	27007425	chr3R	27016542	27016570	roo	9	9153	2.0	3.0	2.5	2.6	9181	chr3R	27007389	intron	RYa-R +	chr3R	27011980	intron	RYa-R +	chr3R	27016570	intron	RYa-R +	chr3R_9_27010001	chr3R_27010001	RAL-911
1724	chr3R	27140504	27140539	chr3R	27148123	27148169	412	13	7623	2.0	6.5	4.2	2.5	7665	chr3R	27140504	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148169	intron	CG6051 -	chr3R_13_27140001	chr3R_27140001	RAL-911
1725	chr3R	27137237	27137275	chr3R	27149182	27149220	412	11	11948	37.0	25.0	31.0	0.3	11983	chr3R	27137237	intron	CG6051 -	chr3R	27143228	intron	CG6051 -	chr3R	27149220	intron	CG6051 -	chr3R_11_27140001	chr3R_27140001	RAL-911
1726	chr3R	27342784	27342823	chr3R	27351383	27351419	Tirant	4	8596	2.0	7.5	4.8	0.7	8635	chr3R	27342784	intron	CG42534 +	chr3R	27347102	intron	CG42534 +	chr3R	27351419	intron	CG42534 +	chr3R_4_27345001	chr3R_27345001	RAL-911
1732	chr3R	27521137	27521185	chr3R	27530365	27530414	roo	20	9229	3.5	6.0	4.8	3.4	9277	chr3R	27521137	intron	CG12885 +	chr3R	27525776	intron	CG12885 +	chr3R	27530414	intron	CG12885 +	chr3R_20_27525001	chr3R_27525001	RAL-911
1736	chr3R	27725551	27725586	chr3R	27731013	27731048	I-element	7	5461	4.0	5.5	4.8	1.2	5497	chr3R	27725551	intergenic	not near genes	chr3R	27728300	intergenic	not near genes	chr3R	27731048	intergenic	not near genes	chr3R_7_27725001	chr3R_27725001	RAL-911
1740	chr3R	27856758	27856783	chr3R	27858255	27858286	hopper2	4	1501	6.5	6.5	6.5	0.5	1528	chr3R	27856758	intron	CG34353 -	chr3R	27857522	intron	CG34353 -	chr3R	27858286	intron	CG34353 -	chr3R_4_27855001	chr3R_27855001	RAL-911
1741	chr3R	27875679	27875729	chr3R	27882754	27882804	297	12	7075	3.5	1.0	2.2	3.8	7125	chr3R	27875679	intron	CG34353 -	chr3R	27879242	intron	CG34353 -	chr3R	27882804	intron	CG34353 -	chr3R_12_27875001	chr3R_27875001	RAL-911
1744	chr3R	28068490	28068523	chr3R	28073949	28073970	I-element	5	5458	0.0	2.0	1.0	2.5	5480	chr3R	28068490	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073970	intron	CG34362 +	chr3R_5_28070001	chr3R_28070001	RAL-911
1745	chr3R	28173658	28173693	chr3R	28181108	28181143	mdg1	12	7448	5.0	6.0	5.5	1.8	7485	chr3R	28173658	intron	CG34354 +	chr3R	28177400	intron	CG34354 +	chr3R	28181143	intron	CG34354 +	chr3R_12_28175001	chr3R_28175001	RAL-911
1746	chr3R	28253347	28253361	chr3R	28255848	28255891	jockey	7	2516	1.0	2.5	1.8	2.5	2544	chr3R	28253347	intergenic	not near genes	chr3R	28254619	intergenic	not near genes	chr3R	28255891	intergenic	not near genes	chr3R_7_28250001	chr3R_28250001	RAL-911
1747	chr3R	28302093	28302116	chr3R	28302555	28302578	jockey	8	462	4.0	3.5	3.8	1.7	485	chr3R	28302093	intergenic	not near genes	chr3R	28302336	intergenic	not near genes	chr3R	28302578	intergenic	not near genes	chr3R_8_28300001	chr3R_28300001	RAL-911
1754	chr3R	28763902	28763913	chr3R	28771365	28771376	Stalker4	5	7463	0.0	11.0	5.5	0.8	7474	chr3R	28763902	intergenic	not near genes	chr3R	28767639	intergenic	not near genes	chr3R	28771376	intergenic	not near genes	chr3R_5_28765001	chr3R_28765001	RAL-911
1767	chr3R	29406628	29406639	chr3R	29407899	29407945	jockey	5	1299	1.0	3.5	2.2	1.6	1317	chr3R	29406628	intron	Ptp99A +	chr3R	29407286	intron	Ptp99A +	chr3R	29407945	intron	Ptp99A +	chr3R_5_29405001	chr3R_29405001	RAL-911
1772	chr3R	29738259	29738301	chr3R	29739729	29739773	hobo	4	1463	2.0	2.5	2.2	1.2	1514	chr3R	29738259	intergenic	CG1969 +,CG7598 +	chr3R	29739016	intron	CG1969 +	chr3R	29739773	5` UTR	CG1969 +	chr3R_4_29735001	chr3R_29735001	RAL-911
1775	chr3R	29882007	29882035	chr3R	29891184	29891212	roo	7	9175	4.0	5.0	4.5	1.3	9205	chr3R	29882007	intron	CG31038 +	chr3R	29886610	intron	CG31038 +	chr3R	29891212	intron	CG31038 +	chr3R_7_29885001	chr3R_29885001	RAL-911
1779	chr3R	30084836	30084879	chr3R	30086321	30086343	hobo	4	1478	3.0	1.0	2.0	1.3	1507	chr3R	30084836	intron	sima +	chr3R	30085590	intron	sima +	chr3R	30086343	intron	sima +	chr3R_4_30085001	chr3R_30085001	RAL-911
1783	chr3R	30238742	30238779	chr3R	30239926	30239964	1360	6	1184	3.5	0.0	1.8	2.1	1222	chr3R	30238742	intergenic	not near genes	chr3R	30239353	intergenic	not near genes	chr3R	30239964	intergenic	not near genes	chr3R_6_30235001	chr3R_30235001	RAL-911
1788	chr3R	30375526	30375568	chr3R	30383169	30383210	412	8	7642	4.0	2.0	3.0	2.0	7684	chr3R	30375526	intergenic	not near genes	chr3R	30379368	intergenic	not near genes	chr3R	30383210	intergenic	not near genes	chr3R_8_30375001	chr3R_30375001	RAL-911
1789	chr3R	30396198	30396239	chr3R	30404484	30404524	roo	7	8285	4.5	4.0	4.2	1.3	8326	chr3R	30396198	intergenic	not near genes	chr3R	30400361	intergenic	not near genes	chr3R	30404524	5` UTR	CR45570 +	chr3R_7_30400001	chr3R_30400001	RAL-911
1801	chr3R	31074212	31074258	chr3R	31081830	31081876	springer	5	7618	2.0	2.5	2.2	1.6	7664	chr3R	31074212	intron	Sox100B +	chr3R	31078044	intron	Sox100B +	chr3R	31081876	intron	Sox100B +	chr3R_5_31075001	chr3R_31075001	RAL-911
1809	chr3R	31997981	31998022	chr3R	32005471	32005512	blood	6	7484	1.5	5.5	3.5	1.3	7531	chr3R	31997981	intron	heph -	chr3R	32001746	intron	heph -	chr3R	32005512	intron	heph -	chr3R_6_32000001	chr3R_32000001	RAL-911
1810	chr4	76473	76514	chr4	81936	81962	I-element	6	5459	2.0	3.0	2.5	1.7	5489	chr4	76473	intron	pan +	chr4	79218	intron	pan +	chr4	81962	intron	pan +	chr4_6_75001	chr4_75001	RAL-911
1813	chr4	319972	319998	chr4	328168	328194	Stalker2	8	8196	4.5	6.0	5.2	1.3	8222	chr4	319972	3` UTR	CG32850 +	chr4	324083	intron	CG32850 +	chr4	328194	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_8_320001	chr4_320001	RAL-911
1814	chr4	320000	320019	chr4	328165	328215	Stalker2	11	8193	3.5	5.5	4.5	2.0	8215	chr4	320000	3` UTR	CG32850 +	chr4	324108	intron	CG32850 +	chr4	328215	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_11_320001	chr4_320001	RAL-911
1815	chr4	671590	671629	chr4	680189	680200	Tirant	4	8592	3.5	5.0	4.2	0.8	8610	chr4	671590	intron	CG11360 +	chr4	675895	intron	CG11360 +	chr4	680200	intron	CG11360 +	chr4_4_675001	chr4_675001	RAL-911
1819	chrX	295862	295882	chrX	303493	303522	412	6	7637	2.5	4.0	3.2	1.4	7660	chrX	295862	intron	CG3777 +	chrX	299692	intron	CG3777 +	chrX	303522	intron	CG3777 +	chrX_6_295001	chrX_295001	RAL-911
1820	chrX	318454	318487	chrX	323560	323578	flea	6	5103	4.0	5.5	4.8	1.0	5124	chrX	318454	intron,intron	CG3777 +,CG32816 -	chrX	321016	intron,intron	CG3777 +,CG32816 -	chrX	323578	intron,intron	CG3777 +,CG32816 -	chrX_6_320001	chrX_320001	RAL-911
1821	chrX	428427	428443	chrX	434632	434647	3S18	5	6205	6.0	4.5	5.2	0.8	6220	chrX	428427	intron	CG32816 -	chrX	431537	intron	CG32816 -	chrX	434647	intron	CG32816 -	chrX_5_430001	chrX_430001	RAL-911
1825	chrX	812264	812298	chrX	817905	817949	297	5	5649	3.0	4.0	3.5	1.1	5685	chrX	812264	intron	CG43867 -	chrX	815106	intron	CG43867 -	chrX	817949	intron	CG43867 -	chrX_5_815001	chrX_815001	RAL-911
1826	chrX	827593	827633	chrX	835394	835445	roo	8	7809	3.0	5.5	4.2	1.5	7852	chrX	827593	intron	CG43867 -	chrX	831519	intron	CG43867 -	chrX	835445	intron	CG43867 -	chrX_8_830001	chrX_830001	RAL-911
1829	chrX	1357781	1357805	chrX	1367947	1367995	Doc	6	10184	3.5	5.0	4.2	1.2	10214	chrX	1357781	intergenic	png -	chrX	1362888	intergenic	not near genes	chrX	1367995	intergenic	not near genes	chrX_6_1360001	chrX_1360001	RAL-911
1830	chrX	1518024	1518065	chrX	1523445	1523487	jockey	5	5420	4.0	4.0	4.0	1.0	5463	chrX	1518024	intergenic	inc +	chrX	1520756	intergenic	not near genes	chrX	1523487	intergenic	not near genes	chrX_5_1520001	chrX_1520001	RAL-911
1831	chrX	1930520	1930570	chrX	1938111	1938160	opus	8	7591	5.5	5.0	5.2	1.3	7640	chrX	1930520	intergenic	CG11596 +	chrX	1934340	intergenic	not near genes	chrX	1938160	3` UTR	CG3857 -	chrX_8_1930001	chrX_1930001	RAL-911
1835	chrX	2664369	2664406	chrX	2665535	2665566	1360	6	1165	2.0	2.0	2.0	2.0	1197	chrX	2664369	intron	sgg +	chrX	2664968	intron	sgg +	chrX	2665566	intron	sgg +	chrX_6_2660001	chrX_2660001	RAL-911
1837	chrX	3058002	3058050	chrX	3058260	3058311	pogo	11	260	1.5	2.5	2.0	3.7	309	chrX	3058002	intron	kirre +	chrX	3058156	intron	kirre +	chrX	3058311	intron	kirre +	chrX_11_3055001	chrX_3055001	RAL-911
1838	chrX	3218486	3218539	chrX	3227655	3227708	roo	9	9169	3.0	2.5	2.8	2.4	9222	chrX	3218486	intron	dnc +	chrX	3223097	intron	dnc +	chrX	3227708	intron	dnc +	chrX_9_3220001	chrX_3220001	RAL-911
1841	chrX	3415003	3415051	chrX	3421208	3421226	3S18	6	6198	1.5	4.0	2.8	1.6	6223	chrX	3415003	intron,intron	CR44999 +,CG12535 -	chrX	3418114	intron,intron	CR44999 +,CG12535 -	chrX	3421226	intron,intron	CR44999 +,CG12535 -	chrX_6_3415001	chrX_3415001	RAL-911
1845	chrX	3493089	3493107	chrX	3502267	3502276	roo	4	9176	2.0	1.5	1.8	1.4	9187	chrX	3493089	intron,intron	CR44999 +,Gas8 -	chrX	3497682	intron,intron	CR44999 +,Gas8 -	chrX	3502276	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	RAL-911
1848	chrX	3842317	3842353	chrX	3842578	3842614	pogo	7	261	1.0	4.5	2.8	1.8	297	chrX	3842317	intron	ec +	chrX	3842466	intron	ec +	chrX	3842614	intron	ec +	chrX_7_3840001	chrX_3840001	RAL-911
1851	chrX	3986854	3986879	chrX	3994501	3994520	412	5	7642	1.0	0.0	0.5	3.3	7666	chrX	3986854	intergenic	not near genes	chrX	3990687	intergenic	not near genes	chrX	3994520	intergenic	not near genes	chrX_5_3990001	chrX_3990001	RAL-911
1859	chrX	4700375	4700420	chrX	4700733	4700750	jockey	7	354	0.5	2.5	1.5	2.8	375	chrX	4700375	3` UTR	ctp +	chrX	4700562	3` UTR	ctp +	chrX	4700750	3` UTR	ctp +	chrX_7_4700001	chrX_4700001	RAL-911
1860	chrX	4731800	4731846	chrX	4736908	4736925	jockey	4	5089	2.0	2.5	2.2	1.2	5125	chrX	4731800	intergenic	not near genes	chrX	4734362	intergenic	not near genes	chrX	4736925	intergenic	not near genes	chrX_4_4730001	chrX_4730001	RAL-911
1862	chrX	4763243	4763276	chrX	4763751	4763781	Stalker4	7	502	3.5	5.5	4.5	1.3	538	chrX	4763243	intergenic	not near genes	chrX	4763512	intergenic	not near genes	chrX	4763781	intergenic	not near genes	chrX_7_4760001	chrX_4760001	RAL-911
1866	chrX	4990024	4990075	chrX	4997257	4997293	roo	9	7229	1.5	1.0	1.2	4.1	7269	chrX	4990024	intron	CR44833 -	chrX	4993658	intron	CR44833 -	chrX	4997293	intron	CR44833 -	chrX_9_4990001	chrX_4990001	RAL-911
1869	chrX	5096298	5096303	chrX	5103860	5103888	springer	4	7576	2.0	3.0	2.5	1.1	7590	chrX	5096298	intron,intron	CG15465 +,rg +	chrX	5100093	intron,intron	CG15465 +,rg +	chrX	5103888	intron,intron	CG15465 +,rg +	chrX_4_5100001	chrX_5100001	RAL-911
1873	chrX	5481067	5481085	chrX	5485055	5485073	I-element	7	3988	0.5	8.5	4.5	1.3	4006	chrX	5481067	intron	SPR +	chrX	5483070	intron	SPR +	chrX	5485073	intron	SPR +	chrX_7_5480001	chrX_5480001	RAL-911
1875	chrX	5524821	5524851	chrX	5528703	5528734	412	7	3883	5.5	1.0	3.2	1.7	3913	chrX	5524821	intergenic	snoRNA:Psi28S-3342 -	chrX	5526778	intergenic	not near genes	chrX	5528734	intergenic	Vsx2 -	chrX_7_5525001	chrX_5525001	RAL-911
1877	chrX	5883802	5883835	chrX	5884063	5884094	pogo	8	258	0.5	5.5	3.0	2.0	292	chrX	5883802	intron	CR45668 -	chrX	5883948	intron	CR45668 -	chrX	5884094	intron	CR45668 -	chrX_8_5880001	chrX_5880001	RAL-911
1883	chrX	7125235	7125269	chrX	7134414	7134448	roo	7	9177	0.0	6.0	3.0	1.8	9213	chrX	7125235	intergenic	not near genes	chrX	7129842	intergenic	not near genes	chrX	7134448	intergenic	not near genes	chrX_7_7125001	chrX_7125001	RAL-911
1888	chrX	8031411	8031454	chrX	8035740	8035777	Juan	12	4328	1.5	5.0	3.2	2.9	4366	chrX	8031411	intergenic	not near genes	chrX	8033594	intergenic	not near genes	chrX	8035777	3` UTR	CG2233 -	chrX_12_8030001	chrX_8030001	RAL-911
1896	chrX	8948744	8948792	chrX	8956274	8956321	roo	9	7527	2.5	2.5	2.5	2.6	7577	chrX	8948744	intron	rdgA +	chrX	8952532	intron	rdgA +	chrX	8956321	intron	rdgA +	chrX_9_8950001	chrX_8950001	RAL-911
1900	chrX	9508136	9508156	chrX	9509661	9509694	jockey	5	1534	3.5	2.5	3.0	1.2	1558	chrX	9508136	intron	CG32700 -	chrX	9508915	intron	CG32700 -	chrX	9509694	intron	CG32700 -	chrX_5_9505001	chrX_9505001	RAL-911
1903	chrX	10138201	10138236	chrX	10145724	10145760	412	6	7524	2.0	0.0	1.0	3.0	7559	chrX	10138201	intron,intron	RhoU +,CR44894 -	chrX	10141980	intron,intron	RhoU +,CR44894 -	chrX	10145760	intron,intron	RhoU +,CR44894 -	chrX_6_10140001	chrX_10140001	RAL-911
1905	chrX	10267300	10267330	chrX	10276470	10276500	roo	6	9169	0.5	5.0	2.8	1.6	9200	chrX	10267300	3` UTR	alpha-Man-I -	chrX	10271900	intron	alpha-Man-I -	chrX	10276500	3` UTR	alpha-Man-I -	chrX_6_10270001	chrX_10270001	RAL-911
1906	chrX	10348779	10348814	chrX	10356364	10356399	springer	4	7585	5.0	4.0	4.5	0.7	7620	chrX	10348779	intergenic	snoRNA:U3:9B +	chrX	10352589	intergenic	not near genes	chrX	10356399	intergenic	l(1)G0289 -	chrX_4_10350001	chrX_10350001	RAL-911
1910	chrX	10686030	10686077	chrX	10691187	10691229	roo	10	5155	2.5	3.5	3.0	2.5	5199	chrX	10686030	intron	X11Lbeta +	chrX	10688630	intron	X11Lbeta +	chrX	10691229	intron	X11Lbeta +	chrX_10_10685001	chrX_10685001	RAL-911
1911	chrX	11095979	11096024	chrX	11103101	11103146	HMS-Beagle	13	7121	6.5	3.5	5.0	2.2	7167	chrX	11095979	intergenic	not near genes	chrX	11099562	intergenic	not near genes	chrX	11103146	intron	CG42249 +	chrX_13_11095001	chrX_11095001	RAL-911
1913	chrX	11633405	11633442	chrX	11640478	11640516	297	4	7074	2.5	4.5	3.5	0.9	7111	chrX	11633405	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640516	intron	Ptp10D +	chrX_4_11635001	chrX_11635001	RAL-911
1919	chrX	12168133	12168163	chrX	12173571	12173616	I-element	5	5453	2.5	0.5	1.5	2.0	5483	chrX	12168133	intron	Ten-a +	chrX	12170874	intron	Ten-a +	chrX	12173616	intron	Ten-a +	chrX_5_12170001	chrX_12170001	RAL-911
1921	chrX	12381902	12381904	chrX	12385777	12385781	flea	5	3891	1.0	4.5	2.8	1.3	3879	chrX	12381902	intergenic	not near genes	chrX	12383842	intergenic	not near genes	chrX	12385781	intergenic	not near genes	chrX_5_12380001	chrX_12380001	RAL-911
1928	chrX	12930579	12930601	chrX	12937715	12937737	HMS-Beagle	11	7136	2.5	4.5	3.5	2.4	7158	chrX	12930579	intron	fne +	chrX	12934158	intron	fne +	chrX	12937737	intron	fne +	chrX_11_12930001	chrX_12930001	RAL-911
1932	chrX	3120059	3120059	chrX	12946234	12946234	Juan	6	9826175	0.5	16.0	8.2	0.7	9826175	chrX	3120059	intron	kirre +	chrX	8033146	intergenic	not near genes	chrX	12946234	3` UTR	fne +	chrX_6_8030001	chrX_8030001	RAL-911
1938	chrX	3120060	3120060	chrX	12946235	12946235	Juan	7	9826175	0.0	16.0	8.0	0.8	9826175	chrX	3120060	intron	kirre +	chrX	8033148	intergenic	not near genes	chrX	12946235	3` UTR	fne +	chrX_7_8030001	chrX_8030001	RAL-911
1948	chrX	13401465	13401516	chrX	13401837	13401877	jockey	7	370	2.0	4.5	3.2	1.7	412	chrX	13401465	intergenic	CG1673 +,CG12725 -	chrX	13401671	intergenic	CG12725 -,CG1673 +	chrX	13401877	3` UTR	CG12725 -	chrX_7_13400001	chrX_13400001	RAL-911
1949	chrX	13429476	13429481	chrX	13430639	13430650	jockey	4	1168	0.0	8.0	4.0	0.8	1174	chrX	13429476	intergenic	not near genes	chrX	13430063	intergenic	not near genes	chrX	13430650	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-911
1950	chrX	13463634	13463678	chrX	13469231	13469249	mdg3	8	5590	2.5	3.5	3.0	2.0	5615	chrX	13463634	intron	Neto +	chrX	13466442	intron	Neto +	chrX	13469249	intron	Neto +	chrX_8_13465001	chrX_13465001	RAL-911
1952	chrX	13937964	13938008	chrX	13941255	13941299	I-element	7	3291	1.5	0.5	1.0	3.5	3335	chrX	13937964	intron	mamo -	chrX	13939632	intron	mamo -	chrX	13941299	intron	mamo -	chrX_7_13935001	chrX_13935001	RAL-911
1956	chrX	14157575	14157598	chrX	14163252	14163275	297	5	5675	6.0	4.5	5.2	0.8	5700	chrX	14157575	intergenic	not near genes	chrX	14160425	intergenic	not near genes	chrX	14163275	intergenic	not near genes	chrX_5_14160001	chrX_14160001	RAL-911
1960	chrX	14416290	14416296	chrX	14421078	14421079	F-element	5	4787	6.0	3.5	4.8	0.9	4789	chrX	14416290	intron	dpr8 +	chrX	14418684	intron	dpr8 +	chrX	14421079	intron	dpr8 +	chrX_5_14415001	chrX_14415001	RAL-911
1961	chrX	14416300	14416340	chrX	14421073	14421105	F-element	5	4777	2.0	3.0	2.5	1.4	4805	chrX	14416300	intron	dpr8 +	chrX	14418702	intron	dpr8 +	chrX	14421105	intron	dpr8 +	chrX_5_14415001	chrX_14415001	RAL-911
1966	chrX	14636450	14636491	chrX	14641910	14641952	I-element	8	5457	1.0	1.5	1.2	3.6	5502	chrX	14636450	intron	NetA -	chrX	14639201	intron	NetA -	chrX	14641952	intron	NetA -	chrX_8_14635001	chrX_14635001	RAL-911
1969	chrX	14778009	14778046	chrX	14782826	14782863	Doc	8	4817	3.0	3.0	3.0	2.0	4854	chrX	14778009	intergenic	CG5347 +	chrX	14780436	intergenic	not near genes	chrX	14782863	intergenic	Ag5r2 -	chrX_8_14780001	chrX_14780001	RAL-911
1973	chrX	14936851	14936872	chrX	14946128	14946149	roo	4	9276	6.0	2.5	4.2	0.8	9298	chrX	14936851	intron	pdgy -	chrX	14941500	intron	pdgy -	chrX	14946149	intron	pdgy -	chrX_4_14940001	chrX_14940001	RAL-911
1974	chrX	14936873	14936889	chrX	14946124	14946166	roo	4	9270	4.0	2.5	3.2	1.0	9293	chrX	14936873	intron	pdgy -	chrX	14941520	intron	pdgy -	chrX	14946166	intron	pdgy -	chrX_4_14940001	chrX_14940001	RAL-911
1976	chrX	15421905	15421932	chrX	15423436	15423450	pogo	5	1522	1.5	4.0	2.8	1.3	1545	chrX	15421905	intron	Cngl -	chrX	15422678	intron	Cngl -	chrX	15423450	intron	Cngl -	chrX_5_15420001	chrX_15420001	RAL-911
1977	chrX	15435690	15435698	chrX	15436142	15436151	rover	5	451	0.0	4.0	2.0	1.7	461	chrX	15435690	intron	Cngl -	chrX	15435920	intron	Cngl -	chrX	15436151	intron	Cngl -	chrX_5_15435001	chrX_15435001	RAL-911
1982	chrX	16222769	16222803	chrX	16231139	16231173	roo	7	8369	1.5	5.0	3.2	1.7	8404	chrX	16222769	intergenic	not near genes	chrX	16226971	intergenic	not near genes	chrX	16231173	intergenic	not near genes	chrX_7_16225001	chrX_16225001	RAL-911
1984	chrX	16340652	16340697	chrX	16349827	16349849	roo	5	9169	0.5	4.0	2.2	1.6	9197	chrX	16340652	intergenic	Dsp1 +	chrX	16345250	intergenic	not near genes	chrX	16349849	intergenic	sl +	chrX_5_16345001	chrX_16345001	RAL-911
1986	chrX	16492634	16492671	chrX	16498231	16498268	mdg3	10	5595	3.0	1.5	2.2	3.1	5634	chrX	16492634	intron	para -	chrX	16495451	intron	para -	chrX	16498268	intron	para -	chrX_10_16495001	chrX_16495001	RAL-911
1992	chrX	17057934	17057965	chrX	17058195	17058226	pogo	6	261	2.0	4.5	3.2	1.4	292	chrX	17057934	intron	CG45002 -	chrX	17058080	intron	CG45002 -	chrX	17058226	intron	CG45002 -	chrX_6_17055001	chrX_17055001	RAL-911
2009	chrX	18194049	18194101	chrX	18194604	18194636	BS	8	549	1.5	2.5	2.0	2.7	587	chrX	18194049	intron	Frq2 +	chrX	18194342	intron	Frq2 +	chrX	18194636	intron	Frq2 +	chrX_8_18190001	chrX_18190001	RAL-911
2012	chrX	18429481	18429523	chrX	18434812	18434853	Transpac	10	5328	2.5	2.5	2.5	2.9	5372	chrX	18429481	intergenic	not near genes	chrX	18432167	intergenic	not near genes	chrX	18434853	intergenic	not near genes	chrX_10_18430001	chrX_18430001	RAL-911
2020	chrX	18957053	18957090	chrX	18965736	18965773	roo	7	8680	5.0	5.5	5.2	1.1	8720	chrX	18957053	intron	CG43759 +	chrX	18961413	intron	CG43759 +	chrX	18965773	intron	CG43759 +	chrX_7_18960001	chrX_18960001	RAL-911
2024	chrX	19136540	19136564	chrX	19143479	19143504	412	4	6937	2.0	0.0	1.0	2.0	6964	chrX	19136540	intergenic	not near genes	chrX	19140022	intergenic	not near genes	chrX	19143504	3` UTR	RhoGAP18B -	chrX_4_19140001	chrX_19140001	RAL-911
2026	chrX	19380156	19380180	chrX	19380402	19380441	pogo	4	256	2.5	1.0	1.8	1.4	285	chrX	19380156	intron	kek5 +	chrX	19380298	intron	kek5 +	chrX	19380441	intron	kek5 +	chrX_4_19380001	chrX_19380001	RAL-911
2041	chrX	20377338	20377350	chrX	20378815	20378837	hobo	4	1483	2.0	2.5	2.2	1.2	1499	chrX	20377338	intergenic	not near genes	chrX	20378088	intergenic	not near genes	chrX	20378837	intergenic	not near genes	chrX_4_20375001	chrX_20375001	RAL-911
2051	chrX	20836727	20836754	chrX	20844348	20844369	roo	9	7618	3.0	6.0	4.5	1.6	7642	chrX	20836727	intron	shakB -	chrX	20840548	intron	shakB -	chrX	20844369	intron	shakB -	chrX_9_20840001	chrX_20840001	RAL-911
2052	chrX	20940707	20940750	chrX	20942196	20942231	hobo	8	1486	0.5	1.5	1.0	4.0	1524	chrX	20940707	intergenic	not near genes	chrX	20941469	intergenic	not near genes	chrX	20942231	intergenic	not near genes	chrX_8_20940001	chrX_20940001	RAL-911
2053	chrX	20956977	20957006	chrX	20962431	20962468	I-element	8	5460	2.5	1.5	2.0	2.7	5491	chrX	20956977	intergenic	not near genes	chrX	20959722	intergenic	not near genes	chrX	20962468	intergenic	Ser6 -	chrX_8_20955001	chrX_20955001	RAL-911
2056	chrX	21061858	21061870	chrX	21062361	21062373	roo	10	505	6.0	2.5	4.2	1.9	515	chrX	21061858	intron	bves +	chrX	21062116	intron	bves +	chrX	21062373	intron,3` UTR	bves +,CG32512 -	chrX_10_21060001	chrX_21060001	RAL-911
2059	chrX	21086145	21086161	chrX	21087161	21087201	jockey	6	1035	3.5	2.0	2.8	1.6	1056	chrX	21086145	intergenic	not near genes	chrX	21086673	intergenic	not near genes	chrX	21087201	intergenic	not near genes	chrX_6_21085001	chrX_21085001	RAL-911
2066	chrX	21458719	21458727	chrX	21464140	21464152	Ivk	5	5429	0.5	3.0	1.8	1.8	5433	chrX	21458719	intergenic	not near genes	chrX	21461436	intergenic	not near genes	chrX	21464152	intergenic	not near genes	chrX_5_21460001	chrX_21460001	RAL-911
2072	chrX	22996294	22996335	chrX	23003548	23003589	roo	8	7254	3.0	4.5	3.8	1.7	7295	chrX	22996294	intron,intron	stnA -,stnB -	chrX	22999942	intron,intron	stnA -,stnB -	chrX	23003589	intron,intron	stnA -,stnB -	chrX_8_22995001	chrX_22995001	RAL-911