SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47458	47489	chr2L	52563	52593	jockey	14	5105	8.0	8.0	8.0	1.6	5135	chr2L	47458	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52593	intron	Cda5 -	chr2L_14_50001	chr2L_50001	RAL-897
9	chr2L	347892	347918	chr2L	355386	355418	blood	7	7499	2.0	2.0	2.0	2.3	7526	chr2L	347892	3` UTR	Plc21C +	chr2L	351655	intron	Plc21C +	chr2L	355418	3` UTR	Plc21C +	chr2L_7_350001	chr2L_350001	RAL-897
16	chr2L	686920	686952	chr2L	695957	695992	roo	15	9038	1.5	6.0	3.8	3.1	9072	chr2L	686920	intron	ds -	chr2L	691456	intron	ds -	chr2L	695992	intron	ds -	chr2L_15_690001	chr2L_690001	RAL-897
18	chr2L	770465	770494	chr2L	772245	772254	Bari1	17	1772	4.5	5.0	4.8	2.9	1789	chr2L	770465	intergenic	not near genes	chr2L	771360	intergenic	not near genes	chr2L	772254	intergenic	CR44614 +	chr2L_17_770001	chr2L_770001	RAL-897
21	chr2L	976884	976908	chr2L	984520	984544	roo	6	7636	3.0	2.0	2.5	1.7	7660	chr2L	976884	intergenic	not near genes	chr2L	980714	intergenic	not near genes	chr2L	984544	intergenic	not near genes	chr2L_6_980001	chr2L_980001	RAL-897
24	chr2L	1220129	1220161	chr2L	1227595	1227627	blood	23	7465	3.0	2.5	2.8	6.1	7498	chr2L	1220129	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227627	intron	CG42329 +	chr2L_23_1220001	chr2L_1220001	RAL-897
33	chr2L	1570688	1570718	chr2L	1573560	1573590	F-element	10	2872	5.5	4.5	5.0	1.7	2902	chr2L	1570688	intron	haf +	chr2L	1572139	intron	haf +	chr2L	1573590	intron	haf +	chr2L_10_1570001	chr2L_1570001	RAL-897
35	chr2L	1678976	1679009	chr2L	1686441	1686471	blood	12	7463	1.0	8.5	4.8	2.1	7495	chr2L	1678976	intron	chinmo +	chr2L	1682724	intron	chinmo +	chr2L	1686471	intron	chinmo +	chr2L_12_1680001	chr2L_1680001	RAL-897
38	chr2L	1711355	1711388	chr2L	1711678	1711699	mdg3	19	323	7.5	12.0	9.8	1.8	344	chr2L	1711355	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711527	3` UTR	frtz -	chr2L	1711699	3` UTR	frtz -	chr2L_19_1710001	chr2L_1710001	RAL-897
41	chr2L	2100376	2100405	chr2L	2109524	2109547	roo	12	9149	8.5	5.5	7.0	1.5	9171	chr2L	2100376	intron	dpr3 -	chr2L	2104962	intron	dpr3 -	chr2L	2109547	intron	dpr3 -	chr2L_12_2100001	chr2L_2100001	RAL-897
42	chr2L	2112121	2112145	chr2L	2119776	2119790	opus	11	7656	4.0	5.5	4.8	1.9	7669	chr2L	2112121	intergenic	not near genes	chr2L	2115956	intergenic	not near genes	chr2L	2119790	intergenic	not near genes	chr2L_11_2115001	chr2L_2115001	RAL-897
51	chr2L	2661195	2661234	chr2L	2663032	2663072	I-element	9	1832	1.5	2.5	2.0	3.0	1877	chr2L	2661195	intergenic	not near genes	chr2L	2662134	intergenic	not near genes	chr2L	2663072	intergenic	not near genes	chr2L_9_2660001	chr2L_2660001	RAL-897
59	chr2L	3073029	3073061	chr2L	3078232	3078263	copia	14	5203	5.0	5.0	5.0	2.3	5234	chr2L	3073029	intron	toc -	chr2L	3075646	intron	toc -	chr2L	3078263	intron	toc -	chr2L_14_3075001	chr2L_3075001	RAL-897
60	chr2L	3202737	3202769	chr2L	3210165	3210198	mdg1	8	7428	2.0	1.0	1.5	3.2	7461	chr2L	3202737	intergenic	not near genes	chr2L	3206468	intergenic	not near genes	chr2L	3210198	intergenic	CR45336 +	chr2L_8_3205001	chr2L_3205001	RAL-897
62	chr2L	3251497	3251527	chr2L	3259062	3259092	springer	5	7564	3.5	5.5	4.5	0.9	7595	chr2L	3251497	intergenic	not near genes	chr2L	3255294	intergenic	not near genes	chr2L	3259092	intergenic	not near genes	chr2L_5_3255001	chr2L_3255001	RAL-897
67	chr2L	3388605	3388630	chr2L	3388846	3388871	pogo	4	241	2.5	3.5	3.0	1.0	266	chr2L	3388605	intergenic	CG42460 -	chr2L	3388738	intergenic	CG42460 -	chr2L	3388871	intergenic	CG42460 -,CR44791 +	chr2L_4_3385001	chr2L_3385001	RAL-897
75	chr2L	3649790	3649807	chr2L	3654992	3655009	copia	5	5201	4.0	3.5	3.8	1.0	5219	chr2L	3649790	intron	for -	chr2L	3652400	intron	for -	chr2L	3655009	intron	for -	chr2L_5_3650001	chr2L_3650001	RAL-897
85	chr2L	4066040	4066064	chr2L	4068865	4068887	Juan	10	2824	5.0	6.5	5.8	1.5	2847	chr2L	4066040	intron	ed +	chr2L	4067464	intron	ed +	chr2L	4068887	intron	ed +	chr2L_10_4065001	chr2L_4065001	RAL-897
89	chr2L	4181295	4181300	chr2L	4183927	4183931	Burdock	4	2632	2.5	12.0	7.2	0.5	2636	chr2L	4181295	intergenic	not near genes	chr2L	4182613	intergenic	not near genes	chr2L	4183931	intergenic	not near genes	chr2L_4_4180001	chr2L_4180001	RAL-897
98	chr2L	4601702	4601736	chr2L	4609143	4609177	mdg1	14	7440	4.0	6.5	5.2	2.3	7475	chr2L	4601702	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609177	intron	dp -	chr2L_14_4605001	chr2L_4605001	RAL-897
99	chr2L	4661847	4661856	chr2L	4669427	4669436	opus	4	7580	1.5	8.5	5.0	0.7	7589	chr2L	4661847	intergenic	not near genes	chr2L	4665642	intergenic	not near genes	chr2L	4669436	intergenic	not near genes	chr2L_4_4665001	chr2L_4665001	RAL-897
119	chr2L	5342775	5342794	chr2L	5345155	5345165	Doc	4	2375	3.0	3.5	3.2	1.0	2390	chr2L	5342775	intergenic	not near genes	chr2L	5343970	intergenic	not near genes	chr2L	5345165	intergenic	not near genes	chr2L_4_5340001	chr2L_5340001	RAL-897
128	chr2L	5827710	5827740	chr2L	5836718	5836748	roo	15	9005	5.5	7.0	6.2	2.1	9038	chr2L	5827710	intron	TrissinR +	chr2L	5832229	intron	TrissinR +	chr2L	5836748	intron	TrissinR +	chr2L_15_5830001	chr2L_5830001	RAL-897
141	chr2L	6363155	6363182	chr2L	6366070	6366104	Burdock	6	2917	3.0	3.0	3.0	1.5	2949	chr2L	6363155	intergenic	not near genes	chr2L	6364630	intergenic	not near genes	chr2L	6366104	intergenic	not near genes	chr2L_6_6360001	chr2L_6360001	RAL-897
144	chr2L	6426861	6426889	chr2L	6445121	6445149	roo	11	18259	4.0	5.5	4.8	1.9	18288	chr2L	6426861	3` UTR	CG9527 -	chr2L	6436005	intron	CG9527 -	chr2L	6445149	exon	CG9527 -	chr2L_11_6435001	chr2L_6435001	RAL-897
153	chr2L	6876776	6876810	chr2L	6882964	6883000	diver	13	6185	8.5	3.5	6.0	1.9	6224	chr2L	6876776	intron	Nlg2 +	chr2L	6879888	intron	Nlg2 +	chr2L	6883000	intron	Nlg2 +	chr2L_13_6875001	chr2L_6875001	RAL-897
162	chr2L	7343332	7343354	chr2L	7350440	7350470	roo	9	7113	5.5	7.5	6.5	1.2	7138	chr2L	7343332	intron	Wnt6 +	chr2L	7346901	intron	Wnt6 +	chr2L	7350470	intron	Wnt6 +	chr2L_9_7345001	chr2L_7345001	RAL-897
170	chr2L	7959042	7959062	chr2L	7960453	7960471	pogo	8	1410	5.0	0.5	2.8	2.1	1429	chr2L	7959042	intron	Snoo -	chr2L	7959756	intron	Snoo -	chr2L	7960471	intron	Snoo -	chr2L_8_7955001	chr2L_7955001	RAL-897
171	chr2L	7977090	7977102	chr2L	7984065	7984077	297	6	6974	7.0	8.0	7.5	0.7	6987	chr2L	7977090	intron	Snoo -	chr2L	7980584	intron	Snoo -	chr2L	7984077	intron,5` UTR	Snoo -,CG7231 +	chr2L_6_7980001	chr2L_7980001	RAL-897
172	chr2L	7977104	7977112	chr2L	7984063	7984087	297	7	6971	5.0	7.5	6.2	1.0	6983	chr2L	7977104	intron	Snoo -	chr2L	7980596	intron	Snoo -	chr2L	7984087	intron,5` UTR	Snoo -,CG7231 +	chr2L_7_7980001	chr2L_7980001	RAL-897
173	chr2L	8013616	8013617	chr2L	8018820	8018821	copia	4	5204	9.0	0.5	4.8	0.7	5205	chr2L	8013616	intron	Tg +	chr2L	8016218	intron	Tg +	chr2L	8018821	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-897
174	chr2L	8013619	8013631	chr2L	8018819	8018835	copia	5	5203	8.5	0.5	4.5	0.9	5216	chr2L	8013619	intron	Tg +	chr2L	8016227	intron	Tg +	chr2L	8018835	intron	Tg +	chr2L_5_8015001	chr2L_8015001	RAL-897
181	chr2L	8452427	8452442	chr2L	8461591	8461613	roo	8	9169	4.0	6.0	5.0	1.3	9186	chr2L	8452427	intron	fu12 -	chr2L	8457020	intron	fu12 -	chr2L	8461613	intron	fu12 -	chr2L_8_8455001	chr2L_8455001	RAL-897
183	chr2L	8594464	8594492	chr2L	8601518	8601546	297	6	7052	5.5	3.0	4.2	1.2	7082	chr2L	8594464	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598005	intron	Sema-1a +	chr2L	8601546	intron	Sema-1a +	chr2L_6_8595001	chr2L_8595001	RAL-897
186	chr2L	8723113	8723146	chr2L	8731490	8731522	Tirant	19	8376	4.5	4.5	4.5	3.5	8409	chr2L	8723113	intron	raw -	chr2L	8727318	intron	raw -	chr2L	8731522	intron	raw -	chr2L_19_8725001	chr2L_8725001	RAL-897
191	chr2L	9000277	9000312	chr2L	9007787	9007822	roo	12	7510	3.5	2.0	2.8	3.2	7545	chr2L	9000277	intergenic	Try29F +	chr2L	9004050	intergenic	not near genes	chr2L	9007822	intergenic	not near genes	chr2L_12_9000001	chr2L_9000001	RAL-897
206	chr2L	9393516	9393528	chr2L	9396482	9396494	jockey	4	2966	0.5	9.0	4.8	0.7	2978	chr2L	9393516	intron	Shawl -	chr2L	9395005	intron	Shawl -	chr2L	9396494	intron	Shawl -	chr2L_4_9395001	chr2L_9395001	RAL-897
214	chr2L	9973730	9973758	chr2L	9980846	9980871	HMS-Beagle	17	7116	8.0	6.0	7.0	2.1	7141	chr2L	9973730	intergenic	not near genes	chr2L	9977300	intergenic	not near genes	chr2L	9980871	intergenic	not near genes	chr2L_17_9975001	chr2L_9975001	RAL-897
221	chr2L	10156323	10156354	chr2L	10163792	10163817	blood	14	7464	4.0	7.5	5.8	2.1	7494	chr2L	10156323	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160070	intron	CG44153 -	chr2L	10163817	intron	CG44153 -	chr2L_14_10160001	chr2L_10160001	RAL-897
231	chr2L	10592854	10592873	chr2L	10600516	10600535	opus	9	7662	2.5	4.0	3.2	2.1	7681	chr2L	10592854	intron	Trim9 +	chr2L	10596694	intron	Trim9 +	chr2L	10600535	intron	Trim9 +	chr2L_9_10595001	chr2L_10595001	RAL-897
236	chr2L	10862843	10862874	chr2L	10864456	10864486	Rt1c	14	1609	8.0	8.5	8.2	1.5	1643	chr2L	10862843	3` UTR	CR43807 -	chr2L	10863664	intron	CR43807 -	chr2L	10864486	3` UTR	CR43807 -	chr2L_14_10860001	chr2L_10860001	RAL-897
240	chr2L	10946962	10946977	chr2L	10956157	10956192	roo	7	9210	5.5	8.0	6.8	0.9	9230	chr2L	10946962	intron	dpr2 -	chr2L	10951577	intron	dpr2 -	chr2L	10956192	intron	dpr2 -	chr2L_7_10950001	chr2L_10950001	RAL-897
256	chr2L	11563638	11563669	chr2L	11568842	11568869	copia	12	5203	6.5	3.0	4.8	2.1	5231	chr2L	11563638	intergenic	not near genes	chr2L	11566254	intergenic	not near genes	chr2L	11568869	intergenic	not near genes	chr2L_12_11565001	chr2L_11565001	RAL-897
259	chr2L	11614081	11614086	chr2L	11615547	11615581	hopper2	8	1484	3.5	5.0	4.2	1.5	1500	chr2L	11614081	intron	kek2 +	chr2L	11614831	intron	kek2 +	chr2L	11615581	intron	kek2 +	chr2L_8_11610001	chr2L_11610001	RAL-897
260	chr2L	11713508	11713540	chr2L	11720976	11721008	blood	21	7464	6.0	6.0	6.0	3.0	7500	chr2L	11713508	intergenic	not near genes	chr2L	11717258	intergenic	not near genes	chr2L	11721008	intergenic	CR44143 +	chr2L_21_11715001	chr2L_11715001	RAL-897
265	chr2L	12067332	12067357	chr2L	12074384	12074409	297	8	7052	5.0	2.5	3.8	1.7	7077	chr2L	12067332	intergenic	not near genes	chr2L	12070870	intergenic	not near genes	chr2L	12074409	intergenic	not near genes	chr2L_8_12070001	chr2L_12070001	RAL-897
274	chr2L	12558322	12558352	chr2L	12565451	12565480	HMS-Beagle	11	7128	4.0	2.0	3.0	2.8	7158	chr2L	12558322	intergenic	not near genes	chr2L	12561901	intergenic	not near genes	chr2L	12565480	intergenic	not near genes	chr2L_11_12560001	chr2L_12560001	RAL-897
279	chr2L	12731058	12731090	chr2L	12735825	12735856	F-element	6	4767	2.5	2.5	2.5	1.7	4798	chr2L	12731058	intron	MRP +	chr2L	12733457	intron	MRP +	chr2L	12735856	intron	MRP +	chr2L_6_12730001	chr2L_12730001	RAL-897
280	chr2L	12739174	12739205	chr2L	12743955	12743984	Doc	14	4780	5.0	5.0	5.0	2.3	4810	chr2L	12739174	exon	MRP +	chr2L	12741579	intron	MRP +	chr2L	12743984	exon	MRP +	chr2L_14_12740001	chr2L_12740001	RAL-897
282	chr2L	12861695	12861730	chr2L	12863162	12863177	hobo	11	1462	3.5	9.0	6.2	1.5	1482	chr2L	12861695	intergenic	not near genes	chr2L	12862436	intergenic	not near genes	chr2L	12863177	intergenic	not near genes	chr2L_11_12860001	chr2L_12860001	RAL-897
283	chr2L	12894039	12894053	chr2L	12895490	12895515	hobo	5	1455	8.0	10.5	9.2	0.5	1476	chr2L	12894039	intergenic	not near genes	chr2L	12894777	intergenic	not near genes	chr2L	12895515	intergenic	not near genes	chr2L_5_12890001	chr2L_12890001	RAL-897
285	chr2L	12933851	12933871	chr2L	12941318	12941337	blood	9	7465	11.5	4.0	7.8	1.0	7486	chr2L	12933851	intergenic	not near genes	chr2L	12937594	intergenic	not near genes	chr2L	12941337	intergenic	not near genes	chr2L_9_12935001	chr2L_12935001	RAL-897
286	chr2L	12933873	12933881	chr2L	12941316	12941348	blood	5	7462	6.0	3.0	4.5	0.9	7475	chr2L	12933873	intergenic	not near genes	chr2L	12937610	intergenic	not near genes	chr2L	12941348	intergenic	not near genes	chr2L_5_12935001	chr2L_12935001	RAL-897
297	chr2L	13405647	13405678	chr2L	13410443	13410475	Doc	21	4795	3.5	5.5	4.5	3.8	4828	chr2L	13405647	exon	CG7110 +	chr2L	13408061	intron	CG7110 +	chr2L	13410475	intron	CG7110 +	chr2L_21_13405001	chr2L_13405001	RAL-897
305	chr2L	13761809	13761830	chr2L	13762918	13762922	Doc	4	1106	12.5	7.0	9.8	0.4	1113	chr2L	13761809	intron	TM9SF4 +	chr2L	13762366	intron	TM9SF4 +	chr2L	13762922	intron	TM9SF4 +	chr2L_4_13760001	chr2L_13760001	RAL-897
306	chr2L	13853082	13853118	chr2L	13862232	13862268	roo	17	9147	6.5	3.0	4.8	2.9	9186	chr2L	13853082	intron	CenG1A +	chr2L	13857675	intron	CenG1A +	chr2L	13862268	intron	CenG1A +	chr2L_17_13855001	chr2L_13855001	RAL-897
317	chr2L	14465590	14465618	chr2L	14469053	14469081	hopper2	7	3463	2.0	1.0	1.5	2.8	3491	chr2L	14465590	intergenic	not near genes	chr2L	14467336	intergenic	not near genes	chr2L	14469081	intergenic	not near genes	chr2L_7_14465001	chr2L_14465001	RAL-897
322	chr2L	14642575	14642604	chr2L	14651737	14651767	roo	4	9162	0.0	1.5	0.8	2.2	9192	chr2L	14642575	intron	osp -	chr2L	14647171	intron	osp -	chr2L	14651767	intron	osp -	chr2L_4_14645001	chr2L_14645001	RAL-897
326	chr2L	14803881	14803913	chr2L	14809084	14809108	copia	14	5199	3.0	9.5	6.2	1.9	5227	chr2L	14803881	intergenic	not near genes	chr2L	14806494	intergenic	not near genes	chr2L	14809108	intergenic	not near genes	chr2L_14_14805001	chr2L_14805001	RAL-897
327	chr2L	14889951	14889983	chr2L	14890376	14890408	jockey	13	425	9.0	6.0	7.5	1.5	457	chr2L	14889951	intergenic	not near genes	chr2L	14890180	intergenic	not near genes	chr2L	14890408	intergenic	not near genes	chr2L_13_14890001	chr2L_14890001	RAL-897
330	chr2L	14984378	14984397	chr2L	14991980	14991994	opus	4	7601	8.5	2.0	5.2	0.6	7616	chr2L	14984378	intron	mol -	chr2L	14988186	intron	mol -	chr2L	14991994	intron	mol -	chr2L_4_14985001	chr2L_14985001	RAL-897
342	chr2L	15446052	15446084	chr2L	15453521	15453553	blood	15	7467	4.5	2.0	3.2	3.6	7501	chr2L	15446052	intergenic	not near genes	chr2L	15449802	intergenic	not near genes	chr2L	15453553	intergenic	not near genes	chr2L_15_15445001	chr2L_15445001	RAL-897
345	chr2L	15586410	15586439	chr2L	15593461	15593491	297	8	7051	3.5	2.5	3.0	2.0	7081	chr2L	15586410	intergenic	not near genes	chr2L	15589950	intergenic	not near genes	chr2L	15593491	intergenic	not near genes	chr2L_8_15585001	chr2L_15585001	RAL-897
352	chr2L	15956030	15956058	chr2L	15957490	15957525	hobo	12	1466	4.0	4.0	4.0	2.4	1495	chr2L	15956030	intron	beat-Ib -	chr2L	15956778	intron	beat-Ib -	chr2L	15957525	intron	beat-Ib -	chr2L_12_15955001	chr2L_15955001	RAL-897
354	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	8	145889	22.5	39.5	31.0	0.2	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	RAL-897
355	chr2L	16141148	16141190	chr2L	16146369	16146397	copia	8	5208	0.0	2.5	1.2	3.6	5249	chr2L	16141148	intergenic	not near genes	chr2L	16143772	intergenic	not near genes	chr2L	16146397	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	RAL-897
360	chr2L	16280254	16280283	chr2L	16281425	16281447	1360	15	1169	5.5	10.0	7.8	1.7	1193	chr2L	16280254	intron	crp -	chr2L	16280850	intron	crp -	chr2L	16281447	intron	crp -	chr2L_15_16280001	chr2L_16280001	RAL-897
373	chr2L	16958105	16958135	chr2L	16962891	16962923	Doc	6	4787	3.5	4.0	3.8	1.2	4818	chr2L	16958105	intergenic	not near genes	chr2L	16960514	intergenic	not near genes	chr2L	16962923	intergenic	not near genes	chr2L_6_16960001	chr2L_16960001	RAL-897
378	chr2L	17273193	17273225	chr2L	17277974	17278008	F-element	25	4782	7.0	4.0	5.5	3.8	4815	chr2L	17273193	intergenic	not near genes	chr2L	17275600	intergenic	not near genes	chr2L	17278008	intergenic	not near genes	chr2L_25_17275001	chr2L_17275001	RAL-897
384	chr2L	17687516	17687522	chr2L	17692261	17692267	F-element	4	4745	0.5	3.0	1.8	1.4	4751	chr2L	17687516	intron	CadN -	chr2L	17689892	intron	CadN -	chr2L	17692267	intron	CadN -	chr2L_4_17685001	chr2L_17685001	RAL-897
386	chr2L	17819920	17819950	chr2L	17825123	17825153	copia	9	5203	2.0	4.0	3.0	2.2	5233	chr2L	17819920	intron	CadN2 -	chr2L	17822536	intron	CadN2 -	chr2L	17825153	intron	CadN2 -	chr2L_9_17820001	chr2L_17820001	RAL-897
390	chr2L	18051875	18051909	chr2L	18061022	18061055	roo	11	9145	6.0	5.5	5.8	1.6	9180	chr2L	18051875	intron	rdo +	chr2L	18056465	intron	rdo +	chr2L	18061055	intron	rdo +	chr2L_11_18055001	chr2L_18055001	RAL-897
395	chr2L	18408025	18408045	chr2L	18412809	18412829	Doc	7	4784	6.0	0.0	3.0	1.8	4804	chr2L	18408025	intergenic	not near genes	chr2L	18410427	intergenic	not near genes	chr2L	18412829	intergenic	not near genes	chr2L_7_18410001	chr2L_18410001	RAL-897
407	chr2L	19147368	19147400	chr2L	19154403	19154435	297	20	7033	5.5	5.0	5.2	3.2	7067	chr2L	19147368	intron	brat +	chr2L	19150902	intron	brat +	chr2L	19154435	intron	brat +	chr2L_20_19150001	chr2L_19150001	RAL-897
413	chr2L	19345012	19345036	chr2L	19357221	19357244	blood	8	12208	9.5	5.5	7.5	0.9	12232	chr2L	19345012	intron	dnt -	chr2L	19351128	intron	dnt -	chr2L	19357244	intron	dnt -	chr2L_8_19350001	chr2L_19350001	RAL-897
422	chr2L	19620097	19620132	chr2L	19621080	19621121	jockey	15	986	6.0	8.5	7.2	1.8	1024	chr2L	19620097	intron	Lar +	chr2L	19620609	intron	Lar +	chr2L	19621121	intron	Lar +	chr2L_15_19620001	chr2L_19620001	RAL-897
424	chr2L	19652568	19652601	chr2L	19674004	19674036	opus	7	21436	4.5	2.0	3.2	1.7	21468	chr2L	19652568	intron	Lar +	chr2L	19663302	intron	Lar +	chr2L	19674036	intron	Lar +	chr2L_7_19660001	chr2L_19660001	RAL-897
425	chr2L	19703535	19703568	chr2L	19712671	19712704	roo	15	9134	8.5	3.5	6.0	2.1	9169	chr2L	19703535	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712704	intron	Lar +	chr2L_15_19705001	chr2L_19705001	RAL-897
426	chr2L	19737358	19737383	chr2L	19740827	19740852	1360	13	3467	4.0	5.0	4.5	2.4	3494	chr2L	19737358	intergenic	Nf-YB +	chr2L	19739105	intergenic	not near genes	chr2L	19740852	intergenic	not near genes	chr2L_13_19735001	chr2L_19735001	RAL-897
427	chr2L	19762807	19762838	chr2L	19763049	19763080	pogo	16	241	1.5	2.5	2.0	5.3	273	chr2L	19762807	5` UTR	fbp -	chr2L	19762944	intron	fbp -	chr2L	19763080	intron	fbp -	chr2L_16_19760001	chr2L_19760001	RAL-897
432	chr2L	20005870	20005889	chr2L	20010946	20010963	flea	6	5075	4.0	3.0	3.5	1.3	5093	chr2L	20005870	intron	CG43861 -	chr2L	20008416	intron	CG43861 -	chr2L	20010963	intron	CG43861 -	chr2L_6_20005001	chr2L_20005001	RAL-897
438	chr2L	20303168	20303193	chr2L	20310636	20310661	blood	4	7468	0.5	4.0	2.2	1.2	7493	chr2L	20303168	intergenic	not near genes	chr2L	20306914	intergenic	not near genes	chr2L	20310661	intergenic	not near genes	chr2L_4_20305001	chr2L_20305001	RAL-897
444	chr2L	20576218	20576251	chr2L	20583685	20583719	blood	14	7464	4.5	6.0	5.2	2.3	7501	chr2L	20576218	intergenic	CR45347 +	chr2L	20579968	intergenic	not near genes	chr2L	20583719	3` UTR	CR44909 -	chr2L_14_20575001	chr2L_20575001	RAL-897
448	chr2L	20639512	20639531	chr2L	20639788	20639807	INE-1	7	274	2.5	8.5	5.5	1.1	295	chr2L	20639512	intergenic	not near genes	chr2L	20639660	intergenic	CG31680 +	chr2L	20639807	intergenic	CG31680 +	chr2L_7_20635001	chr2L_20635001	RAL-897
453	chr2L	20901470	20901486	chr2L	20902633	20902647	1360	10	1162	1.5	2.5	2.0	3.3	1177	chr2L	20901470	intron,intron	CG43739 -,sky -	chr2L	20902058	intron,intron	CG43739 -,sky -	chr2L	20902647	intron,intron	CG43739 -,sky -	chr2L_10_20900001	chr2L_20900001	RAL-897
456	chr2L	20976643	20976681	chr2L	20981458	20981496	X-element	12	4815	3.5	5.0	4.2	2.3	4853	chr2L	20976643	intron	CG42238 -	chr2L	20979070	intron	CG42238 -	chr2L	20981496	intron	CG42238 -	chr2L_12_20975001	chr2L_20975001	RAL-897
458	chr2L	21020277	21020311	chr2L	21023954	21023988	NOF	14	3675	3.0	4.5	3.8	2.9	3711	chr2L	21020277	intron	CG42238 -	chr2L	21022132	intron	CG42238 -	chr2L	21023988	intron	CG42238 -	chr2L_14_21020001	chr2L_21020001	RAL-897
459	chr2L	21041133	21041166	chr2L	21049394	21049427	Tirant	15	8259	2.5	2.0	2.2	4.7	8294	chr2L	21041133	intron	CG42238 -	chr2L	21045280	intron	CG42238 -	chr2L	21049427	intron	CG42238 -	chr2L_15_21045001	chr2L_21045001	RAL-897
468	chr2L	21597029	21597058	chr2L	21604772	21604802	roo	5	7742	2.0	3.0	2.5	1.4	7773	chr2L	21597029	intergenic	not near genes	chr2L	21600916	intergenic	not near genes	chr2L	21604802	intergenic	not near genes	chr2L_5_21600001	chr2L_21600001	RAL-897
474	chr2L	21981683	21981715	chr2L	21990848	21990878	roo	11	9164	2.5	5.0	3.8	2.3	9195	chr2L	21981683	exon	CG2528 -	chr2L	21986280	intron	CG2528 -	chr2L	21990878	exon	CG2528 -	chr2L_11_21985001	chr2L_21985001	RAL-897
480	chr2L	22548936	22548944	chr2L	22550139	22550169	1360	4	1220	0.5	5.0	2.8	1.1	1233	chr2L	22548936	intergenic	CG17490 +	chr2L	22549552	intergenic	not near genes	chr2L	22550169	intergenic	CG17493 +	chr2L_4_22545001	chr2L_22545001	RAL-897
481	chr2L	22679802	22679813	chr2L	22684573	22684585	F-element	6	4770	5.0	6.5	5.8	0.9	4783	chr2L	22679802	intron	CG40006 -	chr2L	22682194	intron	CG40006 -	chr2L	22684585	intron	CG40006 -	chr2L_6_22680001	chr2L_22680001	RAL-897
482	chr2L	22679815	22679826	chr2L	22684565	22684596	F-element	7	4764	3.5	4.5	4.0	1.4	4781	chr2L	22679815	intron	CG40006 -	chr2L	22682206	intron	CG40006 -	chr2L	22684596	intron	CG40006 -	chr2L_7_22680001	chr2L_22680001	RAL-897
486	chr2R	469954	469981	chr2R	473195	473222	F-element	5	3241	1.5	2.5	2.0	1.7	3268	chr2R	469954	intergenic	not near genes	chr2R	471588	intergenic	not near genes	chr2R	473222	intergenic	not near genes	chr2R_5_470001	chr2R_470001	RAL-897
487	chr2R	529322	529339	chr2R	537946	537964	Max-element	7	8624	3.0	6.0	4.5	1.3	8642	chr2R	529322	intron	CG40378 +	chr2R	533643	intron	CG40378 +	chr2R	537964	intron	CG40378 +	chr2R_7_530001	chr2R_530001	RAL-897
488	chr2R	552777	552782	chr2R	553976	553988	1360	5	1208	6.5	6.0	6.2	0.7	1211	chr2R	552777	intron	CG40378 +	chr2R	553382	intron	CG40378 +	chr2R	553988	intron	CG40378 +	chr2R_5_550001	chr2R_550001	RAL-897
489	chr2R	1082368	1082385	chr2R	1087126	1087151	Doc	12	4770	12.0	3.0	7.5	1.4	4783	chr2R	1082368	intron	rl +	chr2R	1084760	intron	rl +	chr2R	1087151	intron	rl +	chr2R_12_1080001	chr2R_1080001	RAL-897
492	chr2R	2498992	2499015	chr2R	2508129	2508159	roo	11	9144	2.5	3.0	2.8	2.9	9167	chr2R	2498992	intron	MFS17 -	chr2R	2503576	intron	MFS17 -	chr2R	2508159	intron	MFS17 -	chr2R_11_2500001	chr2R_2500001	RAL-897
494	chr2R	3144092	3144109	chr2R	3393370	3393387	Doc	6	249277	14.5	7.0	10.8	0.5	249295	chr2R	3144092	intron	CG42596 +	chr2R	3268740	intergenic	not near genes	chr2R	3393387	intergenic	not near genes	chr2R_6_3265001	chr2R_3265001	RAL-897
519	chr2R	5418004	5418023	chr2R	5420636	5420644	Burdock	4	2629	1.5	3.5	2.5	1.1	2640	chr2R	5418004	intron	laccase2 +	chr2R	5419324	intron	laccase2 +	chr2R	5420644	intron	laccase2 +	chr2R_4_5415001	chr2R_5415001	RAL-897
525	chr2R	5743875	5743899	chr2R	5744761	5744786	INE-1	7	886	13.0	12.5	12.8	0.5	911	chr2R	5743875	intergenic	not near genes	chr2R	5744330	intergenic	not near genes	chr2R	5744786	intergenic	not near genes	chr2R_7_5740001	chr2R_5740001	RAL-897
530	chr2R	5869293	5869308	chr2R	5874357	5874384	flea	5	5073	2.5	5.5	4.0	1.0	5091	chr2R	5869293	intergenic	not near genes	chr2R	5871838	intergenic	not near genes	chr2R	5874384	intergenic	not near genes	chr2R_5_5870001	chr2R_5870001	RAL-897
533	chr2R	5902182	5902185	chr2R	5909740	5909744	17.6	5	7558	1.0	2.0	1.5	2.0	7562	chr2R	5902182	intron	CG43366 +	chr2R	5905963	intron	CG43366 +	chr2R	5909744	intron	CG43366 +	chr2R_5_5905001	chr2R_5905001	RAL-897
537	chr2R	6096715	6096751	chr2R	6101910	6101949	BS	16	5194	10.0	4.0	7.0	2.0	5234	chr2R	6096715	intron	EcR -	chr2R	6099332	intron	EcR -	chr2R	6101949	intron	EcR -	chr2R_16_6095001	chr2R_6095001	RAL-897
546	chr2R	6952167	6952180	chr2R	6959747	6959760	opus	4	7580	3.5	2.0	2.8	1.1	7593	chr2R	6952167	intron,intron	mim -,CheB42c -	chr2R	6955964	intron,intron	mim -,CheB42c -	chr2R	6959760	intron,intron	mim -,CheB42c -	chr2R_4_6955001	chr2R_6955001	RAL-897
549	chr2R	7139946	7139954	chr2R	7141415	7141446	hopper2	4	1486	6.5	10.0	8.2	0.4	1500	chr2R	7139946	intergenic	not near genes	chr2R	7140696	intergenic	not near genes	chr2R	7141446	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	RAL-897
553	chr2R	7235818	7235852	chr2R	7240910	7240918	jockey	14	5088	8.5	5.0	6.8	1.8	5100	chr2R	7235818	intergenic	not near genes	chr2R	7238368	intergenic	not near genes	chr2R	7240918	intergenic	not near genes	chr2R_14_7235001	chr2R_7235001	RAL-897
557	chr2R	7608410	7608421	chr2R	7613613	7613624	I-element	4	5202	5.0	0.0	2.5	1.1	5214	chr2R	7608410	intron	CG1358 -	chr2R	7611017	intron	CG1358 -	chr2R	7613624	intron	CG1358 -	chr2R_4_7610001	chr2R_7610001	RAL-897
561	chr2R	7815673	7815702	chr2R	7822139	7822158	Burdock	10	6467	2.5	2.5	2.5	2.9	6485	chr2R	7815673	intergenic	CG1882 +	chr2R	7818916	intergenic	not near genes	chr2R	7822158	3` UTR	cathD -	chr2R_10_7815001	chr2R_7815001	RAL-897
562	chr2R	7869194	7869216	chr2R	7873971	7874002	Doc	12	4784	5.5	2.0	3.8	2.5	4808	chr2R	7869194	intron	Dgk -	chr2R	7871598	intron	Dgk -	chr2R	7874002	intron	Dgk -	chr2R_12_7870001	chr2R_7870001	RAL-897
568	chr2R	8330868	8330890	chr2R	8331352	8331376	roo	7	485	5.0	4.0	4.5	1.3	508	chr2R	8330868	intron	pdm3 +	chr2R	8331122	intron	pdm3 +	chr2R	8331376	intron	pdm3 +	chr2R_7_8330001	chr2R_8330001	RAL-897
569	chr2R	8398225	8398242	chr2R	8402988	8403008	Doc	8	4774	10.5	6.0	8.2	0.9	4783	chr2R	8398225	intron	CG2121 -	chr2R	8400616	intron	CG2121 -	chr2R	8403008	intron	CG2121 -	chr2R_8_8400001	chr2R_8400001	RAL-897
577	chr2R	8722763	8722792	chr2R	8723003	8723033	pogo	15	238	5.0	4.0	4.5	2.7	270	chr2R	8722763	intron	CG14767 -	chr2R	8722898	intron	CG14767 -	chr2R	8723033	intron	CG14767 -	chr2R_15_8720001	chr2R_8720001	RAL-897
579	chr2R	8777931	8777944	chr2R	8784122	8784135	diver	4	6191	0.0	9.0	4.5	0.7	6204	chr2R	8777931	intergenic	not near genes	chr2R	8781033	intergenic	not near genes	chr2R	8784135	intergenic	not near genes	chr2R_4_8780001	chr2R_8780001	RAL-897
583	chr2R	9212691	9212720	chr2R	9213177	9213204	roo	13	481	9.5	8.0	8.8	1.3	513	chr2R	9212691	intergenic	CR45309 +	chr2R	9212948	intergenic	CR45309 +	chr2R	9213204	5` UTR	CR45309 +	chr2R_13_9210001	chr2R_9210001	RAL-897
585	chr2R	9352255	9352256	chr2R	9361403	9361406	roo	4	9150	3.5	8.5	6.0	0.6	9151	chr2R	9352255	intron	CG13954 -	chr2R	9356830	intron	CG13954 -	chr2R	9361406	intron	CG13954 -	chr2R_4_9355001	chr2R_9355001	RAL-897
590	chr2R	9480078	9480110	chr2R	9490609	9490641	roo	4	10530	0.5	1.5	1.0	2.0	10563	chr2R	9480078	intergenic	not near genes	chr2R	9485360	intergenic	not near genes	chr2R	9490641	intergenic	not near genes	chr2R_4_9485001	chr2R_9485001	RAL-897
594	chr2R	9726626	9726644	chr2R	9734177	9734195	17.6	4	7551	2.5	2.5	2.5	1.1	7569	chr2R	9726626	intron	sqa -	chr2R	9730410	intron	sqa -	chr2R	9734195	intron	sqa -	chr2R_4_9730001	chr2R_9730001	RAL-897
601	chr2R	10005850	10005884	chr2R	10007014	10007015	1360	16	1157	4.5	5.5	5.0	2.7	1165	chr2R	10005850	intron	Pka-R2 -	chr2R	10006432	intron	Pka-R2 -	chr2R	10007015	intron	Pka-R2 -	chr2R_16_10005001	chr2R_10005001	RAL-897
604	chr2R	10176886	10176907	chr2R	10186047	10186074	roo	5	9166	4.5	0.5	2.5	1.4	9188	chr2R	10176886	intron	KCNQ -	chr2R	10181480	intron	KCNQ -	chr2R	10186074	intron	KCNQ -	chr2R_5_10180001	chr2R_10180001	RAL-897
622	chr2R	10948026	10948062	chr2R	10955577	10955612	17.6	17	7546	0.5	9.5	5.0	2.8	7586	chr2R	10948026	intergenic	not near genes	chr2R	10951819	intergenic	not near genes	chr2R	10955612	intergenic	not near genes	chr2R_17_10950001	chr2R_10950001	RAL-897
623	chr2R	11009812	11009848	chr2R	11018986	11019021	roo	22	9171	4.0	5.0	4.5	4.0	9209	chr2R	11009812	intron	luna -	chr2R	11014416	intron	luna -	chr2R	11019021	intron	luna -	chr2R_22_11010001	chr2R_11010001	RAL-897
624	chr2R	11019881	11019907	chr2R	11024941	11024963	jockey	17	5060	3.5	7.0	5.2	2.7	5082	chr2R	11019881	intron	luna -	chr2R	11022422	intron	luna -	chr2R	11024963	intron	luna -	chr2R_17_11020001	chr2R_11020001	RAL-897
632	chr2R	11207815	11207846	chr2R	11208008	11208039	BS	23	193	5.5	3.5	4.5	4.2	224	chr2R	11207815	intron	shn +	chr2R	11207927	intron	shn +	chr2R	11208039	intron	shn +	chr2R_23_11205001	chr2R_11205001	RAL-897
635	chr2R	11297616	11297636	chr2R	11301937	11301957	flea	14	4321	9.0	4.0	6.5	1.9	4341	chr2R	11297616	intergenic	CG42336 -	chr2R	11299786	intergenic	not near genes	chr2R	11301957	5` UTR	CG7741 +	chr2R_14_11295001	chr2R_11295001	RAL-897
637	chr2R	11415534	11415551	chr2R	11418666	11418699	opus	11	3144	5.5	5.0	5.2	1.8	3165	chr2R	11415534	intron	Drip -	chr2R	11417116	intron	Drip -	chr2R	11418699	intron	Drip -	chr2R_11_11415001	chr2R_11415001	RAL-897
638	chr2R	11472649	11472680	chr2R	11473845	11473877	pogo	18	1197	3.5	6.5	5.0	3.0	1228	chr2R	11472649	intergenic	not near genes	chr2R	11473263	intergenic	not near genes	chr2R	11473877	intergenic	not near genes	chr2R_18_11470001	chr2R_11470001	RAL-897
652	chr2R	12481138	12481169	chr2R	12482938	12482961	roo	9	1799	4.5	5.0	4.8	1.6	1823	chr2R	12481138	exon	Dh44-R2 +	chr2R	12482050	intron	Dh44-R2 +	chr2R	12482961	intron	Dh44-R2 +	chr2R_9_12480001	chr2R_12480001	RAL-897
654	chr2R	12501690	12501706	chr2R	12503851	12503867	Rt1c	5	2161	10.5	6.0	8.2	0.5	2177	chr2R	12501690	intron	fdl -	chr2R	12502778	intron	fdl -	chr2R	12503867	intron	fdl -	chr2R_5_12500001	chr2R_12500001	RAL-897
655	chr2R	12501707	12501728	chr2R	12503848	12503868	Rt1c	6	2150	4.0	6.0	5.0	1.0	2161	chr2R	12501707	intron	fdl -	chr2R	12502788	intron	fdl -	chr2R	12503868	intron	fdl -	chr2R_6_12500001	chr2R_12500001	RAL-897
661	chr2R	12789295	12789326	chr2R	12797658	12797663	roo	11	8355	4.0	6.0	5.0	1.8	8368	chr2R	12789295	intron,3` UTR	sca +,CR45137 -	chr2R	12793479	intron,intron	sca +,CR45137 -	chr2R	12797663	intron,3` UTR	sca +,CR45137 -	chr2R_11_12790001	chr2R_12790001	RAL-897
663	chr2R	12819443	12819474	chr2R	12824516	12824547	jockey	15	5073	5.0	8.0	6.5	2.0	5104	chr2R	12819443	intergenic	not near genes	chr2R	12821995	intergenic	not near genes	chr2R	12824547	intergenic	not near genes	chr2R_15_12820001	chr2R_12820001	RAL-897
666	chr2R	13136840	13136870	chr2R	13141638	13141662	Doc	13	4796	3.0	8.0	5.5	2.0	4822	chr2R	13136840	exon	Cap-G +	chr2R	13139251	intron	Cap-G +	chr2R	13141662	intron	Cap-G +	chr2R_13_13135001	chr2R_13135001	RAL-897
676	chr2R	13580502	13580512	chr2R	13580852	13580860	jockey	6	350	2.5	5.5	4.0	1.2	358	chr2R	13580502	3` UTR	CG6191 -	chr2R	13580681	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580860	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_6_13580001	chr2R_13580001	RAL-897
677	chr2R	13580513	13580526	chr2R	13580849	13580876	jockey	7	345	1.0	4.0	2.5	2.0	363	chr2R	13580513	3` UTR	CG6191 -	chr2R	13580694	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580876	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_7_13580001	chr2R_13580001	RAL-897
682	chr2R	13728151	13728164	chr2R	13735808	13735812	opus	5	7655	2.0	2.5	2.2	1.6	7661	chr2R	13728151	intron	fas +	chr2R	13731982	intron	fas +	chr2R	13735812	intron	fas +	chr2R_5_13730001	chr2R_13730001	RAL-897
686	chr2R	13905600	13905609	chr2R	13907582	13907590	Rt1a	5	1981	11.0	6.5	8.8	0.5	1990	chr2R	13905600	intron	shot -	chr2R	13906595	intron	shot -	chr2R	13907590	intron	shot -	chr2R_5_13905001	chr2R_13905001	RAL-897
687	chr2R	13905611	13905631	chr2R	13907580	13907596	Rt1a	6	1972	6.0	5.0	5.5	0.9	1985	chr2R	13905611	intron	shot -	chr2R	13906604	intron	shot -	chr2R	13907596	intron	shot -	chr2R_6_13905001	chr2R_13905001	RAL-897
695	chr2R	14467305	14467327	chr2R	14476463	14476485	roo	9	9157	2.5	4.0	3.2	2.1	9180	chr2R	14467305	intergenic	not near genes	chr2R	14471895	intergenic	not near genes	chr2R	14476485	5` UTR	CR44462 +	chr2R_9_14470001	chr2R_14470001	RAL-897
703	chr2R	14889206	14889235	chr2R	14897814	14897838	Max-element	6	8607	5.5	0.5	3.0	1.5	8632	chr2R	14889206	intergenic	Cyp6a8 -	chr2R	14893522	intergenic	not near genes	chr2R	14897838	intergenic	not near genes	chr2R_6_14890001	chr2R_14890001	RAL-897
708	chr2R	15015454	15015489	chr2R	15022878	15022913	mdg1	14	7422	4.5	2.0	3.2	3.3	7459	chr2R	15015454	intron	hbs +	chr2R	15019184	intron	hbs +	chr2R	15022913	intron	hbs +	chr2R_14_15015001	chr2R_15015001	RAL-897
709	chr2R	15084980	15085005	chr2R	15092027	15092054	297	10	7047	4.0	3.5	3.8	2.1	7074	chr2R	15084980	intergenic	not near genes	chr2R	15088517	intergenic	not near genes	chr2R	15092054	5` UTR	CR44457 +	chr2R_10_15085001	chr2R_15085001	RAL-897
710	chr2R	15119316	15119349	chr2R	15127797	15127830	Tirant	7	8480	7.0	7.5	7.2	0.9	8514	chr2R	15119316	intron	chn +	chr2R	15123573	intron	chn +	chr2R	15127830	intron	chn +	chr2R_7_15120001	chr2R_15120001	RAL-897
726	chr2R	16539638	16539658	chr2R	16544847	16544867	copia	5	5209	5.0	1.0	3.0	1.2	5229	chr2R	16539638	intergenic	not near genes	chr2R	16542252	intergenic	not near genes	chr2R	16544867	intergenic	not near genes	chr2R_5_16540001	chr2R_16540001	RAL-897
735	chr2R	17147242	17147271	chr2R	17152273	17152302	jockey	13	5031	6.5	5.5	6.0	1.9	5060	chr2R	17147242	intergenic	not near genes	chr2R	17149772	intergenic	not near genes	chr2R	17152302	intergenic	not near genes	chr2R_13_17145001	chr2R_17145001	RAL-897
736	chr2R	17236512	17236541	chr2R	17241716	17241743	copia	18	5203	2.5	7.0	4.8	3.1	5231	chr2R	17236512	intron	mbl +	chr2R	17239128	intron	mbl +	chr2R	17241743	intron	mbl +	chr2R_18_17235001	chr2R_17235001	RAL-897
744	chr2R	17784025	17784055	chr2R	17784266	17784295	pogo	12	239	7.0	5.0	6.0	1.7	270	chr2R	17784025	intergenic	mir-31a -	chr2R	17784160	intergenic	mir-31a -	chr2R	17784295	intergenic	mir-31a -	chr2R_12_17780001	chr2R_17780001	RAL-897
749	chr2R	18045673	18045702	chr2R	18046025	18046054	jockey	4	352	0.5	1.5	1.0	2.0	381	chr2R	18045673	intergenic	not near genes	chr2R	18045864	intergenic	not near genes	chr2R	18046054	intergenic	CG5767 -	chr2R_4_18045001	chr2R_18045001	RAL-897
751	chr2R	18111700	18111713	chr2R	18115543	18115581	F-element	4	3862	4.0	0.0	2.0	1.3	3881	chr2R	18111700	intergenic	not near genes	chr2R	18113640	intergenic	not near genes	chr2R	18115581	intergenic	not near genes	chr2R_4_18110001	chr2R_18110001	RAL-897
758	chr2R	18575798	18575831	chr2R	18581984	18582019	3S18	12	6184	4.0	4.5	4.2	2.3	6221	chr2R	18575798	intron	GEFmeso -	chr2R	18578908	intron	GEFmeso -	chr2R	18582019	intron	GEFmeso -	chr2R_12_18575001	chr2R_18575001	RAL-897
759	chr2R	18590867	18590901	chr2R	18600019	18600052	roo	18	9150	4.5	6.5	5.5	2.8	9185	chr2R	18590867	intron	GEFmeso -	chr2R	18595460	intron	GEFmeso -	chr2R	18600052	intron	GEFmeso -	chr2R_18_18595001	chr2R_18595001	RAL-897
778	chr2R	19776594	19776630	chr2R	19779915	19779952	jockey	11	3320	3.0	3.5	3.2	2.6	3358	chr2R	19776594	intergenic	not near genes	chr2R	19778273	intergenic	not near genes	chr2R	19779952	intergenic	not near genes	chr2R_11_19775001	chr2R_19775001	RAL-897
782	chr2R	19914846	19914877	chr2R	19922258	19922289	mdg1	9	7412	3.5	5.0	4.2	1.7	7443	chr2R	19914846	intergenic	not near genes	chr2R	19918568	intergenic	not near genes	chr2R	19922289	intergenic	not near genes	chr2R_9_19915001	chr2R_19915001	RAL-897
783	chr2R	19957431	19957461	chr2R	19962632	19962663	copia	13	5195	7.5	5.0	6.2	1.8	5232	chr2R	19957431	intergenic	CG44623 +	chr2R	19960047	intergenic	not near genes	chr2R	19962663	intergenic	not near genes	chr2R_13_19960001	chr2R_19960001	RAL-897
793	chr2R	20739445	20739477	chr2R	20744213	20744223	F-element	10	4765	4.5	10.5	7.5	1.2	4778	chr2R	20739445	intron	dpr +	chr2R	20741834	intron	dpr +	chr2R	20744223	intron	dpr +	chr2R_10_20740001	chr2R_20740001	RAL-897
794	chr2R	20783311	20783333	chr2R	20788083	20788105	F-element	4	4772	2.0	5.5	3.8	0.8	4794	chr2R	20783311	intergenic	not near genes	chr2R	20785708	intergenic	not near genes	chr2R	20788105	intergenic	CG43666 -	chr2R_4_20785001	chr2R_20785001	RAL-897
816	chr2R	21738276	21738308	chr2R	21747436	21747467	roo	10	9152	3.0	7.5	5.2	1.6	9191	chr2R	21738276	intergenic	not near genes	chr2R	21742872	intergenic	not near genes	chr2R	21747467	intergenic	not near genes	chr2R_10_21740001	chr2R_21740001	RAL-897
817	chr2R	21753086	21753109	chr2R	21753571	21753577	roo	14	482	8.0	4.5	6.2	1.9	491	chr2R	21753086	intergenic	not near genes	chr2R	21753332	intergenic	not near genes	chr2R	21753577	intergenic	not near genes	chr2R_14_21750001	chr2R_21750001	RAL-897
821	chr2R	21809528	21809557	chr2R	21817768	21817797	roo	12	8239	4.0	5.5	4.8	2.1	8269	chr2R	21809528	intergenic	not near genes	chr2R	21813662	intergenic	not near genes	chr2R	21817797	intergenic	not near genes	chr2R_12_21810001	chr2R_21810001	RAL-897
831	chr2R	22349690	22349705	chr2R	22351474	22351489	jockey	6	1784	11.0	5.0	8.0	0.7	1799	chr2R	22349690	intron	Liprin-gamma -	chr2R	22350590	intron	Liprin-gamma -	chr2R	22351489	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	RAL-897
832	chr2R	22349708	22349725	chr2R	22351472	22351485	jockey	6	1772	4.5	5.0	4.8	1.0	1777	chr2R	22349708	intron	Liprin-gamma -	chr2R	22350596	intron	Liprin-gamma -	chr2R	22351485	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	RAL-897
833	chr2R	22360380	22360398	chr2R	22360813	22360831	jockey	9	432	9.5	6.0	7.8	1.0	451	chr2R	22360380	intron	Liprin-gamma -	chr2R	22360606	intron	Liprin-gamma -	chr2R	22360831	intron	Liprin-gamma -	chr2R_9_22360001	chr2R_22360001	RAL-897
835	chr2R	22525754	22525769	chr2R	22529302	22529324	jockey	4	3553	3.5	7.0	5.2	0.6	3570	chr2R	22525754	intron	px -	chr2R	22527539	intron	px -	chr2R	22529324	intron	px -	chr2R_4_22525001	chr2R_22525001	RAL-897
836	chr2R	22525770	22525786	chr2R	22529300	22529334	jockey	4	3545	1.0	7.0	4.0	0.8	3564	chr2R	22525770	intron	px -	chr2R	22527552	intron	px -	chr2R	22529334	intron	px -	chr2R_4_22525001	chr2R_22525001	RAL-897
841	chr2R	22774959	22774998	chr2R	22775378	22775417	jockey	20	418	3.5	6.0	4.8	3.4	458	chr2R	22774959	intron	CG42260 -	chr2R	22775188	intron	CG42260 -	chr2R	22775417	intron	CG42260 -	chr2R_20_22775001	chr2R_22775001	RAL-897
855	chr2R	23529574	23529607	chr2R	23537148	23537163	412	9	7569	6.0	4.0	5.0	1.5	7589	chr2R	23529574	intron	bw -	chr2R	23533368	intron	bw -	chr2R	23537163	exon	bw -	chr2R_9_23530001	chr2R_23530001	RAL-897
865	chr2R	23914312	23914332	chr2R	23921921	23921946	412	18	7615	2.5	6.5	4.5	3.3	7634	chr2R	23914312	exon	kcc +	chr2R	23918129	intron	kcc +	chr2R	23921946	intron	kcc +	chr2R_18_23915001	chr2R_23915001	RAL-897
869	chr2R	24177235	24177256	chr2R	24184720	24184741	412	7	7485	6.0	2.5	4.2	1.3	7506	chr2R	24177235	3` UTR	Nop60B +	chr2R	24180988	intron	Nop60B +	chr2R	24184741	3` UTR	Nop60B +	chr2R_7_24180001	chr2R_24180001	RAL-897
871	chr2R	24353426	24353461	chr2R	24361788	24361822	roo	4	8362	3.5	0.0	1.8	1.4	8396	chr2R	24353426	intron,intron	bs +,CR44811 -	chr2R	24357624	intron,intron	bs +,CR44811 -	chr2R	24361822	intron,intron	bs +,CR44811 -	chr2R_4_24355001	chr2R_24355001	RAL-897
875	chr2R	24647587	24647618	chr2R	24655144	24655145	412	22	7554	6.5	6.0	6.2	3.1	7558	chr2R	24647587	intergenic	not near genes	chr2R	24651366	intergenic	not near genes	chr2R	24655145	intergenic	not near genes	chr2R_22_24650001	chr2R_24650001	RAL-897
877	chr2R	24727887	24727907	chr2R	24735390	24735394	mdg1	9	7503	2.5	7.0	4.8	1.6	7507	chr2R	24727887	intron	Mid1 -	chr2R	24731640	intron	Mid1 -	chr2R	24735394	intron	Mid1 -	chr2R_9_24730001	chr2R_24730001	RAL-897
878	chr2R	24763609	24763641	chr2R	24765585	24765588	G2	13	1969	6.0	9.0	7.5	1.5	1979	chr2R	24763609	exon	CG3894 +	chr2R	24764598	intron	CG3894 +	chr2R	24765588	exon	CG3894 +	chr2R_13_24760001	chr2R_24760001	RAL-897
889	chr2R	25141668	25141683	chr2R	25159343	25159373	roo	5	17686	3.0	1.5	2.2	1.6	17705	chr2R	25141668	intergenic	not near genes	chr2R	25150520	intergenic	not near genes	chr2R	25159373	intergenic	not near genes	chr2R_5_25150001	chr2R_25150001	RAL-897
892	chr3L	110212	110243	chr3L	119378	119410	roo	10	9167	2.0	2.0	2.0	3.3	9198	chr3L	110212	intergenic	not near genes	chr3L	114811	intergenic	not near genes	chr3L	119410	intergenic	not near genes	chr3L_10_110001	chr3L_110001	RAL-897
896	chr3L	402692	402712	chr3L	409743	409765	297	6	7051	6.0	6.0	6.0	0.9	7073	chr3L	402692	intergenic	not near genes	chr3L	406228	intergenic	not near genes	chr3L	409765	intergenic	not near genes	chr3L_6_405001	chr3L_405001	RAL-897
903	chr3L	789913	789946	chr3L	790398	790428	roo	9	485	2.0	5.0	3.5	2.0	515	chr3L	789913	intergenic	not near genes	chr3L	790170	intergenic	not near genes	chr3L	790428	intergenic	not near genes	chr3L_9_790001	chr3L_790001	RAL-897
904	chr3L	858000	858027	chr3L	866480	866498	Tirant	13	8471	5.0	3.5	4.2	2.5	8498	chr3L	858000	intergenic	not near genes	chr3L	862249	intergenic	not near genes	chr3L	866498	intergenic	CG12502 +	chr3L_13_860001	chr3L_860001	RAL-897
906	chr3L	925175	925209	chr3L	932601	932634	mdg1	16	7423	4.0	2.5	3.2	3.8	7459	chr3L	925175	intron	Glut1 +	chr3L	928904	intron	Glut1 +	chr3L	932634	intron	Glut1 +	chr3L_16_925001	chr3L_925001	RAL-897
908	chr3L	939774	939790	chr3L	940895	940911	jockey	7	1120	8.5	3.5	6.0	1.0	1137	chr3L	939774	intron	Glut1 +	chr3L	940342	intron	Glut1 +	chr3L	940911	intron	Glut1 +	chr3L_7_940001	chr3L_940001	RAL-897
913	chr3L	1154131	1154162	chr3L	1163281	1163312	roo	15	9149	6.0	5.0	5.5	2.3	9181	chr3L	1154131	intron	bab2 -	chr3L	1158722	intron	bab2 -	chr3L	1163312	intron	bab2 -	chr3L_15_1155001	chr3L_1155001	RAL-897
915	chr3L	1219603	1219622	chr3L	1227333	1227355	412	11	7731	5.5	6.5	6.0	1.6	7752	chr3L	1219603	intron	mwh +	chr3L	1223479	intron	mwh +	chr3L	1227355	intron	mwh +	chr3L_11_1220001	chr3L_1220001	RAL-897
921	chr3L	1505998	1506028	chr3L	1513595	1513625	17.6	11	7596	8.5	5.0	6.8	1.4	7627	chr3L	1505998	intron,intron	Psa +,cue -	chr3L	1509812	intron,intron	Psa +,cue -	chr3L	1513625	intron,intron	Psa +,cue -	chr3L_11_1505001	chr3L_1505001	RAL-897
923	chr3L	1740856	1740884	chr3L	1741096	1741125	pogo	7	237	0.0	2.0	1.0	3.5	269	chr3L	1740856	intron	Gk +	chr3L	1740990	intron	Gk +	chr3L	1741125	intron	Gk +	chr3L_7_1740001	chr3L_1740001	RAL-897
932	chr3L	2447510	2447529	chr3L	2456666	2456685	roo	7	9155	5.5	8.0	6.8	0.9	9175	chr3L	2447510	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456685	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RAL-897
943	chr3L	2927852	2927870	chr3L	2936129	2936147	Tirant	9	8277	3.0	2.0	2.5	2.6	8295	chr3L	2927852	intron	Shab +	chr3L	2932000	intron	Shab +	chr3L	2936147	intron	Shab +	chr3L_9_2930001	chr3L_2930001	RAL-897
945	chr3L	3040324	3040337	chr3L	3042113	3042126	S-element	5	1789	5.0	0.0	2.5	1.4	1802	chr3L	3040324	3` UTR	CG2162 +	chr3L	3041225	intergenic	not near genes	chr3L	3042126	intergenic	Jafrac2 +	chr3L_5_3040001	chr3L_3040001	RAL-897
946	chr3L	3061284	3061317	chr3L	3069866	3069900	Tirant	11	8580	5.5	6.5	6.0	1.6	8616	chr3L	3061284	intron	CG32486 -	chr3L	3065592	intron	CG32486 -	chr3L	3069900	intron	CG32486 -	chr3L_11_3065001	chr3L_3065001	RAL-897
949	chr3L	3281450	3281471	chr3L	3281933	3281967	Doc	14	491	3.5	11.0	7.2	1.7	517	chr3L	3281450	intron	CG12017 +	chr3L	3281708	intron	CG12017 +	chr3L	3281967	intron	CG12017 +	chr3L_14_3280001	chr3L_3280001	RAL-897
952	chr3L	3475083	3475109	chr3L	3475527	3475553	jockey	11	444	2.5	7.0	4.8	1.9	470	chr3L	3475083	intron	CG42324 +	chr3L	3475318	intron	CG42324 +	chr3L	3475553	intron	CG42324 +	chr3L_11_3475001	chr3L_3475001	RAL-897
955	chr3L	3601296	3601332	chr3L	3606607	3606643	copia	26	5310	6.5	3.0	4.8	4.5	5347	chr3L	3601296	intron	Eip63E +	chr3L	3603970	intron	Eip63E +	chr3L	3606643	intron	Eip63E +	chr3L_26_3600001	chr3L_3600001	RAL-897
970	chr3L	4328740	4328761	chr3L	4336238	4336259	412	5	7497	5.5	6.5	6.0	0.7	7519	chr3L	4328740	intron	Cip4 -	chr3L	4332500	intron	Cip4 -	chr3L	4336259	intron	Cip4 -	chr3L_5_4330001	chr3L_4330001	RAL-897
986	chr3L	4901126	4901153	chr3L	4907316	4907343	diver	13	6189	3.5	2.5	3.0	3.2	6217	chr3L	4901126	intergenic	CG13704 +	chr3L	4904234	intergenic	not near genes	chr3L	4907343	intergenic	not near genes	chr3L_13_4900001	chr3L_4900001	RAL-897
987	chr3L	5045457	5045485	chr3L	5050237	5050266	Doc	7	4779	2.5	3.0	2.8	1.8	4809	chr3L	5045457	intron	Con -	chr3L	5047862	intron	Con -	chr3L	5050266	intron	Con -	chr3L_7_5045001	chr3L_5045001	RAL-897
1003	chr3L	5537728	5537744	chr3L	5538069	5538083	jockey	6	341	4.0	2.0	3.0	1.5	355	chr3L	5537728	intergenic	not near genes	chr3L	5537906	intergenic	not near genes	chr3L	5538083	intergenic	CG10625 -	chr3L_6_5535001	chr3L_5535001	RAL-897
1008	chr3L	5926319	5926334	chr3L	5926509	5926524	BS	4	190	7.0	7.0	7.0	0.5	205	chr3L	5926319	intron	Vap-33B +	chr3L	5926422	intron	Vap-33B +	chr3L	5926524	intron	Vap-33B +	chr3L_4_5925001	chr3L_5925001	RAL-897
1009	chr3L	5926336	5926347	chr3L	5926507	5926507	BS	6	174	4.0	6.5	5.2	1.0	171	chr3L	5926336	intron	Vap-33B +	chr3L	5926422	intron	Vap-33B +	chr3L	5926507	intron	Vap-33B +	chr3L_6_5925001	chr3L_5925001	RAL-897
1012	chr3L	6001684	6001702	chr3L	6004384	6004398	jockey	5	2699	6.0	1.0	3.5	1.1	2714	chr3L	6001684	intron	PVRAP +	chr3L	6003041	intron	PVRAP +	chr3L	6004398	intron	PVRAP +	chr3L_5_6000001	chr3L_6000001	RAL-897
1013	chr3L	6040369	6040393	chr3L	6042725	6042742	Doc	5	2354	2.5	3.5	3.0	1.2	2373	chr3L	6040369	intergenic	Jon65Aiv +	chr3L	6041556	intergenic	not near genes	chr3L	6042742	intergenic	not near genes	chr3L_5_6040001	chr3L_6040001	RAL-897
1018	chr3L	6220920	6220946	chr3L	6230072	6230098	roo	9	9151	8.0	7.5	7.8	1.0	9178	chr3L	6220920	5` UTR	pncr008:3L +	chr3L	6225509	intergenic	not near genes	chr3L	6230098	intergenic	not near genes	chr3L_9_6225001	chr3L_6225001	RAL-897
1019	chr3L	6335009	6335042	chr3L	6335480	6335512	297	7	470	3.5	3.5	3.5	1.6	503	chr3L	6335009	intron	CG13300 -	chr3L	6335260	intron	CG13300 -	chr3L	6335512	intron	CG13300 -	chr3L_7_6335001	chr3L_6335001	RAL-897
1021	chr3L	6405664	6405680	chr3L	6432128	6432144	roo	4	26464	4.5	3.0	3.8	0.8	26480	chr3L	6405664	intron	CG42747 +	chr3L	6418904	intron	CG42747 +	chr3L	6432144	intron	CG42747 +	chr3L_4_6415001	chr3L_6415001	RAL-897
1027	chr3L	6781132	6781139	chr3L	6783145	6783152	Doc	5	2013	1.5	0.0	0.8	2.8	2020	chr3L	6781132	intergenic	not near genes	chr3L	6782142	intergenic	not near genes	chr3L	6783152	intergenic	not near genes	chr3L_5_6780001	chr3L_6780001	RAL-897
1028	chr3L	6855937	6855946	chr3L	6860715	6860730	Doc	4	4782	7.5	4.5	6.0	0.6	4793	chr3L	6855937	intergenic	not near genes	chr3L	6858334	intergenic	not near genes	chr3L	6860730	intergenic	not near genes	chr3L_4_6855001	chr3L_6855001	RAL-897
1030	chr3L	6887515	6887551	chr3L	6895007	6895043	roo	21	7492	2.5	5.0	3.8	4.4	7528	chr3L	6887515	intergenic	not near genes	chr3L	6891279	intergenic	not near genes	chr3L	6895043	intergenic	not near genes	chr3L_21_6890001	chr3L_6890001	RAL-897
1038	chr3L	7129961	7129981	chr3L	7130153	7130173	BS	4	192	0.0	3.0	1.5	1.6	212	chr3L	7129961	intergenic	CG15829 +	chr3L	7130067	intergenic	CG15829 +	chr3L	7130173	intergenic	CG15829 +	chr3L_4_7130001	chr3L_7130001	RAL-897
1043	chr3L	7377320	7377331	chr3L	7380423	7380435	297	5	3104	6.0	4.0	5.0	0.8	3115	chr3L	7377320	intron	SMSr -	chr3L	7378878	intron	SMSr -	chr3L	7380435	intron	SMSr -	chr3L_5_7375001	chr3L_7375001	RAL-897
1051	chr3L	7793710	7793741	chr3L	7800762	7800792	297	11	7050	5.0	4.0	4.5	2.0	7082	chr3L	7793710	intron	CG32369 -	chr3L	7797251	intron	CG32369 -	chr3L	7800792	intron	CG32369 -	chr3L_11_7795001	chr3L_7795001	RAL-897
1052	chr3L	7886518	7886546	chr3L	7889030	7889064	Stalker4	20	2517	1.5	5.0	3.2	4.8	2546	chr3L	7886518	intron	CG32365 +	chr3L	7887791	intron	CG32365 +	chr3L	7889064	intron	CG32365 +	chr3L_20_7885001	chr3L_7885001	RAL-897
1054	chr3L	7985366	7985398	chr3L	7987694	7987713	NOF	10	2326	1.5	4.5	3.0	2.5	2347	chr3L	7985366	intron	nmo +	chr3L	7986540	intron	nmo +	chr3L	7987713	intron	nmo +	chr3L_10_7985001	chr3L_7985001	RAL-897
1064	chr3L	8791280	8791292	chr3L	8796697	8796712	I-element	6	5419	10.0	0.0	5.0	1.0	5432	chr3L	8791280	exon	Fhos +	chr3L	8793996	intron	Fhos +	chr3L	8796712	intron	Fhos +	chr3L_6_8790001	chr3L_8790001	RAL-897
1071	chr3L	9076925	9076959	chr3L	9084485	9084505	412	25	7557	8.5	6.5	7.5	2.9	7580	chr3L	9076925	exon	Tequila +	chr3L	9080715	intron	Tequila +	chr3L	9084505	exon	Tequila +	chr3L_25_9080001	chr3L_9080001	RAL-897
1072	chr3L	9130567	9130582	chr3L	9134318	9134343	412	8	3760	8.0	3.0	5.5	1.2	3776	chr3L	9130567	intergenic	bol -	chr3L	9132455	intergenic	not near genes	chr3L	9134343	intergenic	Dhpr +	chr3L_8_9130001	chr3L_9130001	RAL-897
1073	chr3L	9164696	9164730	chr3L	9166163	9166197	hobo	9	1467	3.0	0.5	1.8	3.2	1501	chr3L	9164696	intron	Rdl -	chr3L	9165446	intron	Rdl -	chr3L	9166197	intron	Rdl -	chr3L_9_9165001	chr3L_9165001	RAL-897
1074	chr3L	9219248	9219274	chr3L	9219915	9219946	jockey	9	669	4.5	4.0	4.2	1.7	698	chr3L	9219248	intergenic	not near genes	chr3L	9219597	intergenic	not near genes	chr3L	9219946	intergenic	not near genes	chr3L_9_9215001	chr3L_9215001	RAL-897
1076	chr3L	9270615	9270646	chr3L	9278370	9278397	roo	15	7752	3.5	5.5	4.5	2.7	7782	chr3L	9270615	intron	GluRIB +	chr3L	9274506	intron	GluRIB +	chr3L	9278397	exon	GluRIB +	chr3L_15_9270001	chr3L_9270001	RAL-897
1081	chr3L	9443516	9443534	chr3L	9445307	9445325	S-element	5	1791	3.5	1.5	2.5	1.4	1809	chr3L	9443516	intron	CG33926 +	chr3L	9444420	intron	CG33926 +	chr3L	9445325	intron	CG33926 +	chr3L_5_9440001	chr3L_9440001	RAL-897
1082	chr3L	9533759	9533785	chr3L	9541314	9541345	412	6	7550	2.5	9.0	5.8	0.9	7586	chr3L	9533759	intergenic	not near genes	chr3L	9537552	intergenic	not near genes	chr3L	9541345	intergenic	not near genes	chr3L_6_9535001	chr3L_9535001	RAL-897
1084	chr3L	9571921	9571935	chr3L	9572268	9572283	jockey	4	348	8.0	5.5	6.8	0.5	362	chr3L	9571921	intron	CG42673 +	chr3L	9572102	intron	CG42673 +	chr3L	9572283	intron	CG42673 +	chr3L_4_9570001	chr3L_9570001	RAL-897
1085	chr3L	9575908	9575948	chr3L	9580986	9581026	jockey	14	5075	9.0	5.5	7.2	1.7	5118	chr3L	9575908	intron	CG42673 +	chr3L	9578467	intron	CG42673 +	chr3L	9581026	intron	CG42673 +	chr3L_14_9575001	chr3L_9575001	RAL-897
1091	chr3L	9929676	9929701	chr3L	9938455	9938461	roo	6	8776	4.0	9.0	6.5	0.8	8785	chr3L	9929676	intron	CG34356 +	chr3L	9934068	intron	CG34356 +	chr3L	9938461	intron	CG34356 +	chr3L_6_9930001	chr3L_9930001	RAL-897
1105	chr3L	10414971	10414975	chr3L	10417322	10417345	Doc	5	2361	0.5	3.0	1.8	1.8	2374	chr3L	10414971	intergenic	CG12362 +	chr3L	10416158	intergenic	not near genes	chr3L	10417345	intergenic	not near genes	chr3L_5_10415001	chr3L_10415001	RAL-897
1117	chr3L	11087057	11087088	chr3L	11088846	11088877	S-element	19	1788	0.5	3.5	2.0	6.3	1820	chr3L	11087057	intron	JIL-1 -	chr3L	11087967	intron	JIL-1 -	chr3L	11088877	intron	JIL-1 -	chr3L_19_11085001	chr3L_11085001	RAL-897
1118	chr3L	11105292	11105327	chr3L	11107003	11107024	X-element	11	1709	2.0	6.0	4.0	2.2	1732	chr3L	11105292	intergenic	not near genes	chr3L	11106158	intergenic	not near genes	chr3L	11107024	3` UTR	CG32073 -	chr3L_11_11105001	chr3L_11105001	RAL-897
1120	chr3L	11264462	11264495	chr3L	11271414	11271424	17.6	6	6948	5.5	3.0	4.2	1.2	6962	chr3L	11264462	intergenic	not near genes	chr3L	11267943	intergenic	not near genes	chr3L	11271424	intergenic	not near genes	chr3L_6_11265001	chr3L_11265001	RAL-897
1121	chr3L	11277463	11277483	chr3L	11278458	11278463	Rt1a	8	991	2.0	7.5	4.8	1.4	1000	chr3L	11277463	intergenic	not near genes	chr3L	11277963	intergenic	not near genes	chr3L	11278463	intergenic	not near genes	chr3L_8_11275001	chr3L_11275001	RAL-897
1126	chr3L	11564791	11564812	chr3L	11572415	11572431	412	6	7622	6.5	7.5	7.0	0.8	7640	chr3L	11564791	exon	CG33267 +	chr3L	11568611	intron	CG33267 +	chr3L	11572431	exon	CG33267 +	chr3L_6_11565001	chr3L_11565001	RAL-897
1127	chr3L	11723092	11723110	chr3L	11727887	11727905	Doc	4	4790	4.5	3.0	3.8	0.8	4813	chr3L	11723092	3` UTR	Bmcp +	chr3L	11725498	intron	Bmcp +	chr3L	11727905	3` UTR	Bmcp +	chr3L_4_11725001	chr3L_11725001	RAL-897
1133	chr3L	11864552	11864585	chr3L	11865847	11865880	pogo	16	1294	3.0	1.5	2.2	5.0	1328	chr3L	11864552	intron	CG44837 -	chr3L	11865216	intron	CG44837 -	chr3L	11865880	intron	CG44837 -	chr3L_16_11865001	chr3L_11865001	RAL-897
1154	chr3L	12874922	12874962	chr3L	12877214	12877254	jockey	14	2291	4.5	3.5	4.0	2.8	2332	chr3L	12874922	intergenic	not near genes	chr3L	12876088	intergenic	not near genes	chr3L	12877254	intergenic	not near genes	chr3L_14_12875001	chr3L_12875001	RAL-897
1157	chr3L	12919278	12919292	chr3L	12924747	12924755	Rt1c	6	5468	4.5	4.5	4.5	1.1	5477	chr3L	12919278	intergenic	not near genes	chr3L	12922016	intergenic	not near genes	chr3L	12924755	intergenic	not near genes	chr3L_6_12920001	chr3L_12920001	RAL-897
1158	chr3L	12919293	12919313	chr3L	12924746	12924758	Rt1c	9	5459	2.0	4.5	3.2	2.1	5465	chr3L	12919293	intergenic	not near genes	chr3L	12922026	intergenic	not near genes	chr3L	12924758	intergenic	not near genes	chr3L_9_12920001	chr3L_12920001	RAL-897
1161	chr3L	12957786	12957818	chr3L	12962267	12962300	copia	14	4480	2.5	3.0	2.8	3.7	4514	chr3L	12957786	intergenic	not near genes	chr3L	12960043	intergenic	not near genes	chr3L	12962300	intergenic	not near genes	chr3L_14_12960001	chr3L_12960001	RAL-897
1178	chr3L	13525157	13525186	chr3L	13532951	13532981	roo	15	7793	7.0	8.0	7.5	1.8	7824	chr3L	13525157	intergenic	not near genes	chr3L	13529069	intergenic	not near genes	chr3L	13532981	intergenic	not near genes	chr3L_15_13525001	chr3L_13525001	RAL-897
1187	chr3L	13804543	13804577	chr3L	13822829	13822862	roo	12	18284	2.5	3.0	2.8	3.2	18319	chr3L	13804543	intergenic	not near genes	chr3L	13813702	intergenic	not near genes	chr3L	13822862	intergenic	not near genes	chr3L_12_13810001	chr3L_13810001	RAL-897
1192	chr3L	14245574	14245594	chr3L	14245662	14245687	1360	9	91	4.0	5.0	4.5	1.6	113	chr3L	14245574	3` UTR	CR44561 -	chr3L	14245630	3` UTR	CR44561 -	chr3L	14245687	3` UTR	CR44561 -	chr3L_9_14245001	chr3L_14245001	RAL-897
1196	chr3L	14295993	14296015	chr3L	14296467	14296501	roo	9	481	3.5	3.0	3.2	2.1	508	chr3L	14295993	intron	fz +	chr3L	14296247	intron	fz +	chr3L	14296501	intron	fz +	chr3L_9_14295001	chr3L_14295001	RAL-897
1198	chr3L	14312041	14312047	chr3L	14316855	14316859	X-element	4	4812	3.5	8.5	6.0	0.6	4818	chr3L	14312041	exon	fz +	chr3L	14314450	intron	fz +	chr3L	14316859	intron	fz +	chr3L_4_14310001	chr3L_14310001	RAL-897
1202	chr3L	14468446	14468465	chr3L	14473652	14473671	copia	5	5206	3.0	3.0	3.0	1.2	5225	chr3L	14468446	intron	bbg -	chr3L	14471058	intron	bbg -	chr3L	14473671	intron	bbg -	chr3L_5_14470001	chr3L_14470001	RAL-897
1208	chr3L	14721196	14721208	chr3L	14723023	14723050	Rt1c	7	1835	6.0	9.5	7.8	0.8	1854	chr3L	14721196	intron	ome +	chr3L	14722123	intron	ome +	chr3L	14723050	intron	ome +	chr3L_7_14720001	chr3L_14720001	RAL-897
1209	chr3L	14725599	14725627	chr3L	14728592	14728620	Doc	5	2991	2.0	4.5	3.2	1.2	3021	chr3L	14725599	intron	ome +	chr3L	14727110	intron	ome +	chr3L	14728620	intron	ome +	chr3L_5_14725001	chr3L_14725001	RAL-897
1220	chr3L	15085073	15085081	chr3L	15086217	15086218	1360	5	1155	0.0	4.0	2.0	1.7	1145	chr3L	15085073	intron	cp309 -	chr3L	15085646	intron	cp309 -	chr3L	15086218	intron	cp309 -	chr3L_5_15085001	chr3L_15085001	RAL-897
1229	chr3L	15295766	15295795	chr3L	15298609	15298638	gypsy5	4	2842	4.5	2.0	3.2	1.0	2872	chr3L	15295766	intergenic	not near genes	chr3L	15297202	intergenic	not near genes	chr3L	15298638	intergenic	Best4 +	chr3L_4_15295001	chr3L_15295001	RAL-897
1234	chr3L	15423762	15423783	chr3L	15426603	15426626	opus	7	2843	2.5	4.0	3.2	1.7	2864	chr3L	15423762	intergenic	not near genes	chr3L	15425194	intergenic	not near genes	chr3L	15426626	intergenic	not near genes	chr3L_7_15425001	chr3L_15425001	RAL-897
1247	chr3L	15899239	15899258	chr3L	15899790	15899805	jockey	4	552	4.0	3.0	3.5	0.9	566	chr3L	15899239	intergenic	pHCl -	chr3L	15899522	intergenic	pHCl -	chr3L	15899805	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-897
1249	chr3L	15929203	15929224	chr3L	15938350	15938371	roo	9	9147	3.5	5.0	4.2	1.7	9168	chr3L	15929203	intron	Pka-C3 -	chr3L	15933787	intron	Pka-C3 -	chr3L	15938371	intron	Pka-C3 -	chr3L_9_15930001	chr3L_15930001	RAL-897
1254	chr3L	16184107	16184131	chr3L	16188926	16188950	X-element	5	4819	4.5	2.5	3.5	1.1	4843	chr3L	16184107	intergenic	not near genes	chr3L	16186528	intergenic	not near genes	chr3L	16188950	intergenic	not near genes	chr3L_5_16185001	chr3L_16185001	RAL-897
1257	chr3L	16443851	16443877	chr3L	16446190	16446217	Doc	13	2338	2.0	4.0	3.0	3.2	2366	chr3L	16443851	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445034	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446217	intron,intron	CG33158 +,dsx-c73A -	chr3L_13_16445001	chr3L_16445001	RAL-897
1258	chr3L	16493991	16494013	chr3L	16494508	16494519	jockey	17	515	4.5	5.0	4.8	2.9	528	chr3L	16493991	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494255	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494519	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_17_16490001	chr3L_16490001	RAL-897
1265	chr3L	16616513	16616542	chr3L	16621836	16621869	297	8	5325	4.0	5.0	4.5	1.5	5356	chr3L	16616513	3` UTR	Abl -	chr3L	16619191	3` UTR	Abl -	chr3L	16621869	3` UTR	Abl -	chr3L_8_16615001	chr3L_16615001	RAL-897
1267	chr3L	16684030	16684048	chr3L	16689249	16689269	copia	5	5221	2.0	2.0	2.0	1.7	5239	chr3L	16684030	intron,intron	Lasp -,CG43954 -	chr3L	16686650	intron,intron	Lasp -,CG43954 -	chr3L	16689269	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_5_16685001	chr3L_16685001	RAL-897
1277	chr3L	16945734	16945761	chr3L	16954879	16954882	roo	14	9145	8.0	2.0	5.0	2.3	9148	chr3L	16945734	exon	Obp73a +	chr3L	16950308	intergenic	not near genes	chr3L	16954882	5` UTR	Nc73EF +	chr3L_14_16950001	chr3L_16950001	RAL-897
1280	chr3L	17085003	17085038	chr3L	17094151	17094187	roo	13	9149	3.5	5.0	4.2	2.5	9184	chr3L	17085003	intron	Rbp6 -	chr3L	17089595	intron	Rbp6 -	chr3L	17094187	intron	Rbp6 -	chr3L_13_17085001	chr3L_17085001	RAL-897
1290	chr3L	17516978	17517011	chr3L	17524536	17524546	412	16	7552	4.0	7.0	5.5	2.5	7568	chr3L	17516978	intron	CG7564 +	chr3L	17520762	intron	CG7564 +	chr3L	17524546	3` UTR	CG7564 +	chr3L_16_17520001	chr3L_17520001	RAL-897
1294	chr3L	18047715	18047740	chr3L	18056772	18056797	roo	6	9057	1.5	1.0	1.2	2.7	9082	chr3L	18047715	intron	Eip75B -	chr3L	18052256	intron	Eip75B -	chr3L	18056797	intron	Eip75B -	chr3L_6_18050001	chr3L_18050001	RAL-897
1305	chr3L	18506128	18506157	chr3L	18509591	18509612	F-element	10	3462	2.0	0.5	1.2	4.5	3484	chr3L	18506128	intergenic	not near genes	chr3L	18507870	intergenic	not near genes	chr3L	18509612	intergenic	not near genes	chr3L_10_18505001	chr3L_18505001	RAL-897
1306	chr3L	18528632	18528657	chr3L	18537792	18537818	roo	7	9161	2.0	1.0	1.5	2.8	9186	chr3L	18528632	intergenic	not near genes	chr3L	18533225	intergenic	not near genes	chr3L	18537818	intergenic	not near genes	chr3L_7_18530001	chr3L_18530001	RAL-897
1317	chr3L	18772415	18772437	chr3L	18781095	18781118	roo	12	8680	3.0	7.0	5.0	2.0	8703	chr3L	18772415	intron	ftz-f1 -	chr3L	18776766	intron	ftz-f1 -	chr3L	18781118	intron	ftz-f1 -	chr3L_12_18775001	chr3L_18775001	RAL-897
1318	chr3L	18833780	18833813	chr3L	18834943	18834977	1360	7	1164	1.0	5.5	3.2	1.7	1197	chr3L	18833780	intron	Indy -	chr3L	18834378	intron	Indy -	chr3L	18834977	intron	Indy -	chr3L_7_18830001	chr3L_18830001	RAL-897
1322	chr3L	18078301	18078305	chr3L	18937931	18937951	F-element	7	859633	8.5	10.5	9.5	0.7	859650	chr3L	18078301	intergenic	CR45392 +	chr3L	18508126	intergenic	not near genes	chr3L	18937951	intron	CG32204 -	chr3L_7_18505001	chr3L_18505001	RAL-897
1326	chr3L	19008838	19008868	chr3L	19009175	19009206	jockey	6	338	3.0	7.5	5.2	1.0	368	chr3L	19008838	intron	nkd -	chr3L	19009022	intron	nkd -	chr3L	19009206	intron	nkd -	chr3L_6_19005001	chr3L_19005001	RAL-897
1331	chr3L	19115639	19115675	chr3L	19115817	19115818	BS	13	171	8.5	4.0	6.2	1.8	179	chr3L	19115639	intron	CG14082 -	chr3L	19115728	intron	CG14082 -	chr3L	19115818	intron	CG14082 -	chr3L_13_19115001	chr3L_19115001	RAL-897
1332	chr3L	19117047	19117076	chr3L	19124489	19124522	mdg1	15	7444	6.5	4.0	5.2	2.4	7475	chr3L	19117047	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124522	intron	CG14082 -	chr3L_15_19120001	chr3L_19120001	RAL-897
1335	chr3L	19208059	19208092	chr3L	19209433	19209466	Doc	18	1370	3.5	3.0	3.2	4.3	1407	chr3L	19208059	intron	fz2 -	chr3L	19208762	intron	fz2 -	chr3L	19209466	intron	fz2 -	chr3L_18_19205001	chr3L_19205001	RAL-897
1347	chr3L	19848507	19848530	chr3L	19857694	19857720	roo	11	9189	3.5	6.5	5.0	1.8	9213	chr3L	19848507	intron	Papss +	chr3L	19853114	intron	Papss +	chr3L	19857720	intron	Papss +	chr3L_11_19850001	chr3L_19850001	RAL-897
1348	chr3L	19861822	19861852	chr3L	19863610	19863640	S-element	11	1785	5.5	4.0	4.8	1.9	1818	chr3L	19861822	5` UTR	CR45433 +	chr3L	19862731	intergenic	not near genes	chr3L	19863640	intergenic	not near genes	chr3L_11_19860001	chr3L_19860001	RAL-897
1354	chr3L	20257333	20257358	chr3L	20258452	20258478	pogo	6	1120	3.5	5.0	4.2	1.2	1145	chr3L	20257333	intron	rdgC +	chr3L	20257906	intron	rdgC +	chr3L	20258478	intron	rdgC +	chr3L_6_20255001	chr3L_20255001	RAL-897
1356	chr3L	20476752	20476784	chr3L	20484351	20484382	springer	7	7597	4.5	3.5	4.0	1.4	7630	chr3L	20476752	3` UTR	isoQC +	chr3L	20480567	intergenic	not near genes	chr3L	20484382	3` UTR	ZnT77C -	chr3L_7_20480001	chr3L_20480001	RAL-897
1359	chr3L	20590065	20590090	chr3L	20590602	20590625	412	5	535	7.0	6.0	6.5	0.7	560	chr3L	20590065	intergenic	not near genes	chr3L	20590345	intergenic	not near genes	chr3L	20590625	intergenic	not near genes	chr3L_5_20590001	chr3L_20590001	RAL-897
1360	chr3L	20821272	20821311	chr3L	20824740	20824780	NOF	5	3469	1.0	1.5	1.2	2.3	3508	chr3L	20821272	intron	Pka-R1 +	chr3L	20823026	intron	Pka-R1 +	chr3L	20824780	intron	Pka-R1 +	chr3L_5_20820001	chr3L_20820001	RAL-897
1366	chr3L	21014916	21014948	chr3L	21023397	21023428	Tirant	11	8476	3.5	9.5	6.5	1.5	8512	chr3L	21014916	intron	skd -	chr3L	21019172	intron	skd -	chr3L	21023428	intron	skd -	chr3L_11_21015001	chr3L_21015001	RAL-897
1368	chr3L	21151862	21151894	chr3L	21156946	21156978	flea	9	5083	3.5	5.0	4.2	1.7	5116	chr3L	21151862	intron	Ac78C -	chr3L	21154420	intron	Ac78C -	chr3L	21156978	intron	Ac78C -	chr3L_9_21150001	chr3L_21150001	RAL-897
1369	chr3L	21243753	21243769	chr3L	21251309	21251330	412	16	7559	5.5	5.5	5.5	2.5	7577	chr3L	21243753	intron	Eip78C +	chr3L	21247542	intron	Eip78C +	chr3L	21251330	intron	Eip78C +	chr3L_16_21245001	chr3L_21245001	RAL-897
1371	chr3L	21306151	21306180	chr3L	21315309	21315339	roo	9	9158	0.5	2.5	1.5	3.6	9188	chr3L	21306151	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310745	intron	Pc -	chr3L	21315339	3` UTR	Pc -	chr3L_9_21310001	chr3L_21310001	RAL-897
1377	chr3L	21498840	21498866	chr3L	21500478	21500502	1360	13	1638	6.0	5.0	5.5	2.0	1662	chr3L	21498840	intron	Glg1 -	chr3L	21499671	intron	Glg1 -	chr3L	21500502	intron	Glg1 -	chr3L_13_21495001	chr3L_21495001	RAL-897
1378	chr3L	21749314	21749332	chr3L	21754474	21754492	Doc	10	5160	6.0	4.5	5.2	1.6	5178	chr3L	21749314	intron	Syn1 -	chr3L	21751903	intron	Syn1 -	chr3L	21754492	intron	Syn1 -	chr3L_10_21750001	chr3L_21750001	RAL-897
1379	chr3L	21749334	21749346	chr3L	21754473	21754487	Doc	5	5152	3.0	4.5	3.8	1.0	5153	chr3L	21749334	intron	Syn1 -	chr3L	21751910	intron	Syn1 -	chr3L	21754487	intron	Syn1 -	chr3L_5_21750001	chr3L_21750001	RAL-897
1391	chr3L	22099676	22099709	chr3L	22105861	22105895	3S18	7	6186	1.0	1.0	1.0	3.5	6219	chr3L	22099676	intergenic	not near genes	chr3L	22102786	intergenic	not near genes	chr3L	22105895	intergenic	not near genes	chr3L_7_22100001	chr3L_22100001	RAL-897
1400	chr3L	22555770	22555781	chr3L	22563240	22563244	blood	5	7466	7.5	1.5	4.5	0.9	7474	chr3L	22555770	intergenic	not near genes	chr3L	22559507	intergenic	not near genes	chr3L	22563244	intergenic	not near genes	chr3L_5_22555001	chr3L_22555001	RAL-897
1401	chr3L	22555782	22555802	chr3L	22563238	22563241	blood	7	7446	4.5	1.5	3.0	1.8	7459	chr3L	22555782	intergenic	not near genes	chr3L	22559512	intergenic	not near genes	chr3L	22563241	intergenic	not near genes	chr3L_7_22555001	chr3L_22555001	RAL-897
1402	chr3L	22577626	22577649	chr3L	22582414	22582436	Doc	12	4786	5.0	7.0	6.0	1.7	4810	chr3L	22577626	intergenic	not near genes	chr3L	22580031	intergenic	not near genes	chr3L	22582436	3` UTR	CG14459 -	chr3L_12_22580001	chr3L_22580001	RAL-897
1403	chr3L	22617201	22617219	chr3L	22624644	22624671	blood	6	7450	4.0	3.5	3.8	1.2	7470	chr3L	22617201	intron	CG14459 -	chr3L	22620936	intron	CG14459 -	chr3L	22624671	intron	CG14459 -	chr3L_6_22620001	chr3L_22620001	RAL-897
1405	chr3L	22761387	22761414	chr3L	22766821	22766848	Ivk	8	5432	3.5	3.0	3.2	1.9	5461	chr3L	22761387	intron	SPoCk +	chr3L	22764118	intron	SPoCk +	chr3L	22766848	intron	SPoCk +	chr3L_8_22760001	chr3L_22760001	RAL-897
1408	chr3L	22865984	22866012	chr3L	22867117	22867142	Doc	8	1133	4.5	4.5	4.5	1.5	1158	chr3L	22865984	intron	CG33170 +	chr3L	22866563	intron	CG33170 +	chr3L	22867142	intron	CG33170 +	chr3L_8_22865001	chr3L_22865001	RAL-897
1416	chr3L	22989861	22989890	chr3L	22996834	22996853	297	9	6971	4.5	2.0	3.2	2.1	6992	chr3L	22989861	intergenic	not near genes	chr3L	22993357	intergenic	not near genes	chr3L	22996853	intergenic	not near genes	chr3L_9_22990001	chr3L_22990001	RAL-897
1418	chr3L	23042225	23042259	chr3L	23048978	23048999	gypsy6	11	6750	3.0	5.0	4.0	2.2	6774	chr3L	23042225	intergenic	not near genes	chr3L	23045612	intergenic	not near genes	chr3L	23048999	intergenic	not near genes	chr3L_11_23045001	chr3L_23045001	RAL-897
1419	chr3L	23062895	23062899	chr3L	25074005	25074009	Tirant	4	2011110	8.5	8.5	8.5	0.4	2011114	chr3L	23062895	intergenic	not near genes	chr3L	24068452	intergenic	not near genes	chr3L	25074009	intergenic	not near genes	chr3L_4_24065001	chr3L_24065001	RAL-897
1425	chr3L	23973988	23974010	chr3L	23974462	23974485	Dm88	7	475	1.5	6.0	3.8	1.5	497	chr3L	23973988	intron	CG40470 -	chr3L	23974236	intron	CG40470 -	chr3L	23974485	intron	CG40470 -	chr3L_7_23970001	chr3L_23970001	RAL-897
1426	chr3L	23974516	23974534	chr3L	23979445	23979463	Cr1a	4	4929	17.0	18.5	17.8	0.2	4947	chr3L	23974516	intron	CG40470 -	chr3L	23976990	intron	CG40470 -	chr3L	23979463	intron	CG40470 -	chr3L_4_23975001	chr3L_23975001	RAL-897
1427	chr3L	24021284	24021309	chr3L	24022434	24022466	1360	9	1153	3.0	3.0	3.0	2.2	1182	chr3L	24021284	intergenic	not near genes	chr3L	24021875	intergenic	not near genes	chr3L	24022466	intergenic	not near genes	chr3L_9_24020001	chr3L_24020001	RAL-897
1428	chr3L	24168813	24168822	chr3L	24176116	24176135	ZAM	7	7315	3.5	6.5	5.0	1.2	7322	chr3L	24168813	intron	Snap25 +	chr3L	24172474	intron	Snap25 +	chr3L	24176135	intron	Snap25 +	chr3L_7_24170001	chr3L_24170001	RAL-897
1435	chr3R	4105046	4105069	chr3R	4110250	4110273	copia	4	5204	3.0	3.5	3.2	1.0	5227	chr3R	4105046	intergenic	not near genes	chr3R	4107660	intergenic	not near genes	chr3R	4110273	intergenic	not near genes	chr3R_4_4105001	chr3R_4105001	RAL-897
1436	chr3R	4206073	4206104	chr3R	4211648	4211679	mdg3	8	5574	2.5	2.0	2.2	2.5	5606	chr3R	4206073	intron	CG14636 -	chr3R	4208876	intron	CG14636 -	chr3R	4211679	intron	CG14636 -	chr3R_8_4205001	chr3R_4205001	RAL-897
1437	chr3R	4366772	4366784	chr3R	4375138	4375167	roo	4	8379	0.5	2.0	1.2	1.8	8395	chr3R	4366772	3` UTR	CG1090 +	chr3R	4370970	intergenic	not near genes	chr3R	4375167	5` UTR	CR44922 +	chr3R_4_4370001	chr3R_4370001	RAL-897
1438	chr3R	4408413	4408434	chr3R	4412717	4412738	Juan	10	4301	3.5	4.0	3.8	2.1	4325	chr3R	4408413	intron	CG32944 -	chr3R	4410576	intron	CG32944 -	chr3R	4412738	intron	CG32944 -	chr3R_10_4410001	chr3R_4410001	RAL-897
1439	chr3R	4609564	4609578	chr3R	4610710	4610742	1360	10	1162	9.5	4.5	7.0	1.2	1178	chr3R	4609564	intergenic	not near genes	chr3R	4610153	intergenic	not near genes	chr3R	4610742	intergenic	not near genes	chr3R_10_4610001	chr3R_4610001	RAL-897
1441	chr3R	4753240	4753272	chr3R	4757543	4757575	F-element	11	4302	7.5	4.0	5.8	1.6	4335	chr3R	4753240	intron,intron	atms +,CG44098 -	chr3R	4755408	intron,intron	atms +,CG44098 -	chr3R	4757575	intron,exon	atms +,CG44098 -	chr3R_11_4755001	chr3R_4755001	RAL-897
1446	chr3R	4887484	4887504	chr3R	4894861	4894879	rover	6	7376	7.0	7.0	7.0	0.8	7395	chr3R	4887484	intergenic	not near genes	chr3R	4891182	intergenic	not near genes	chr3R	4894879	intergenic	not near genes	chr3R_6_4890001	chr3R_4890001	RAL-897
1453	chr3R	5067979	5068011	chr3R	5073496	5073512	mdg3	13	5515	4.0	2.0	3.0	3.2	5533	chr3R	5067979	intergenic	not near genes	chr3R	5070746	intergenic	not near genes	chr3R	5073512	intergenic	not near genes	chr3R_13_5070001	chr3R_5070001	RAL-897
1457	chr3R	5445974	5445982	chr3R	5452434	5452442	Burdock	5	6460	3.5	5.5	4.5	0.9	6468	chr3R	5445974	intron	CG14669 +	chr3R	5449208	intron	CG14669 +	chr3R	5452442	intron	CG14669 +	chr3R_5_5445001	chr3R_5445001	RAL-897
1458	chr3R	5445985	5445994	chr3R	5452424	5452453	Burdock	6	6456	1.5	4.5	3.0	1.5	6468	chr3R	5445985	intron	CG14669 +	chr3R	5449219	intron	CG14669 +	chr3R	5452453	intron	CG14669 +	chr3R_6_5445001	chr3R_5445001	RAL-897
1461	chr3R	5746013	5746046	chr3R	5746254	5746287	pogo	12	239	2.0	7.0	4.5	2.2	274	chr3R	5746013	3` UTR	Madm +	chr3R	5746150	3` UTR	Madm +	chr3R	5746287	3` UTR	Madm +	chr3R_12_5745001	chr3R_5745001	RAL-897
1462	chr3R	5747012	5747041	chr3R	5753203	5753232	diver	7	6191	1.0	4.5	2.8	1.8	6220	chr3R	5747012	intergenic	Madm +	chr3R	5750122	intergenic	not near genes	chr3R	5753232	intergenic	CG2091 -	chr3R_7_5750001	chr3R_5750001	RAL-897
1464	chr3R	5809120	5809145	chr3R	5809361	5809385	pogo	13	240	5.5	5.0	5.2	2.1	265	chr3R	5809120	3` UTR	CG11000 +	chr3R	5809252	3` UTR	CG11000 +	chr3R	5809385	3` UTR	CG11000 +	chr3R_13_5805001	chr3R_5805001	RAL-897
1465	chr3R	5822381	5822389	chr3R	5823548	5823555	1360	6	1167	4.0	5.0	4.5	1.1	1174	chr3R	5822381	3` UTR	CG2023 -	chr3R	5822968	3` UTR	CG2023 -	chr3R	5823555	3` UTR	CG2023 -	chr3R_6_5820001	chr3R_5820001	RAL-897
1466	chr3R	5822394	5822412	chr3R	5823561	5823579	1360	8	1167	2.0	7.5	4.8	1.4	1185	chr3R	5822394	3` UTR	CG2023 -	chr3R	5822986	3` UTR	CG2023 -	chr3R	5823579	3` UTR	CG2023 -	chr3R_8_5820001	chr3R_5820001	RAL-897
1469	chr3R	5927564	5927590	chr3R	5927804	5927830	pogo	10	239	6.5	3.5	5.0	1.7	266	chr3R	5927564	intron	CG34113 -	chr3R	5927697	intron	CG34113 -	chr3R	5927830	intron	CG34113 -	chr3R_10_5925001	chr3R_5925001	RAL-897
1472	chr3R	6015970	6015994	chr3R	6024443	6024475	Tirant	9	8477	3.5	4.5	4.0	1.8	8505	chr3R	6015970	intergenic	not near genes	chr3R	6020222	intergenic	not near genes	chr3R	6024475	intergenic	not near genes	chr3R_9_6020001	chr3R_6020001	RAL-897
1474	chr3R	6158509	6158535	chr3R	6167092	6167118	Tirant	12	8582	9.0	5.5	7.2	1.5	8609	chr3R	6158509	intergenic	not near genes	chr3R	6162814	intergenic	not near genes	chr3R	6167118	intergenic	CG1077 +	chr3R_12_6160001	chr3R_6160001	RAL-897
1475	chr3R	6175178	6175207	chr3R	6182450	6182467	HMS-Beagle2	15	7268	5.5	5.5	5.5	2.3	7289	chr3R	6175178	intergenic	Osi1 +	chr3R	6178822	intron	CR45194 +	chr3R	6182467	intergenic	CR45194 +	chr3R_15_6175001	chr3R_6175001	RAL-897
1476	chr3R	6206281	6206320	chr3R	6206498	6206537	BS	11	213	4.0	6.5	5.2	1.8	256	chr3R	6206281	exon	Osi24 +	chr3R	6206409	intron	Osi24 +	chr3R	6206537	intron	Osi24 +	chr3R_11_6205001	chr3R_6205001	RAL-897
1485	chr3R	6737502	6737529	chr3R	6739288	6739316	Doc	14	1786	5.5	2.5	4.0	2.8	1814	chr3R	6737502	intron	pb -	chr3R	6738409	intron	pb -	chr3R	6739316	intron	pb -	chr3R_14_6735001	chr3R_6735001	RAL-897
1507	chr3R	7694579	7694592	chr3R	7713638	7713653	invader3	4	19059	2.5	2.0	2.2	1.2	19074	chr3R	7694579	3` UTR	Nlg1 +	chr3R	7704116	intergenic	not near genes	chr3R	7713653	intergenic	not near genes	chr3R_4_7700001	chr3R_7700001	RAL-897
1508	chr3R	7729469	7729498	chr3R	7737406	7737436	Stalker2	7	7937	4.0	6.5	5.2	1.1	7967	chr3R	7729469	intergenic	not near genes	chr3R	7733452	intergenic	not near genes	chr3R	7737436	intergenic	not near genes	chr3R_7_7730001	chr3R_7730001	RAL-897
1516	chr3R	8094408	8094430	chr3R	8099713	8099735	Transpac	10	5304	6.0	4.0	5.0	1.7	5327	chr3R	8094408	intron	CG7900 +	chr3R	8097072	intron	CG7900 +	chr3R	8099735	intron	CG7900 +	chr3R_10_8095001	chr3R_8095001	RAL-897
1517	chr3R	8101766	8101790	chr3R	8104848	8104873	G2	14	3083	4.5	3.5	4.0	2.8	3107	chr3R	8101766	exon	CG7900 +	chr3R	8103320	intron	CG7900 +	chr3R	8104873	3` UTR	CG7900 +	chr3R_14_8100001	chr3R_8100001	RAL-897
1518	chr3R	8207570	8207590	chr3R	8208398	8208422	F-element	8	836	1.0	6.0	3.5	1.8	852	chr3R	8207570	intergenic	not near genes	chr3R	8207996	intergenic	not near genes	chr3R	8208422	intergenic	not near genes	chr3R_8_8205001	chr3R_8205001	RAL-897
1524	chr3R	8403010	8403040	chr3R	8412174	8412206	roo	21	9165	7.5	4.5	6.0	3.0	9196	chr3R	8403010	intron	CG45263 -	chr3R	8407608	intron	CG45263 -	chr3R	8412206	intron	CG45263 -	chr3R_21_8405001	chr3R_8405001	RAL-897
1526	chr3R	8570481	8570509	chr3R	8575145	8575159	HMS-Beagle	16	4661	2.5	6.5	4.5	2.9	4678	chr3R	8570481	intergenic	not near genes	chr3R	8572820	intergenic	not near genes	chr3R	8575159	intergenic	not near genes	chr3R_16_8570001	chr3R_8570001	RAL-897
1527	chr3R	8601781	8601799	chr3R	8610920	8610952	roo	6	9150	4.0	7.0	5.5	0.9	9171	chr3R	8601781	intron	5-HT2B +	chr3R	8606366	intron	5-HT2B +	chr3R	8610952	intron	5-HT2B +	chr3R_6_8605001	chr3R_8605001	RAL-897
1532	chr3R	8707356	8707391	chr3R	8709797	8709819	jockey	14	2439	5.5	6.5	6.0	2.0	2463	chr3R	8707356	intergenic	not near genes	chr3R	8708588	intergenic	not near genes	chr3R	8709819	intergenic	not near genes	chr3R_14_8705001	chr3R_8705001	RAL-897
1534	chr3R	8894873	8894903	chr3R	8896029	8896059	1360	8	1156	1.0	3.0	2.0	2.7	1186	chr3R	8894873	intron	pyd -	chr3R	8895466	intron	pyd -	chr3R	8896059	intron	pyd -	chr3R_8_8895001	chr3R_8895001	RAL-897
1542	chr3R	9278781	9278812	chr3R	9284041	9284055	Rt1a	14	5257	8.5	8.0	8.2	1.5	5274	chr3R	9278781	intergenic	not near genes	chr3R	9281418	intergenic	not near genes	chr3R	9284055	intergenic	not near genes	chr3R_14_9280001	chr3R_9280001	RAL-897
1544	chr3R	9319574	9319607	chr3R	9320009	9320042	jockey	15	434	6.5	3.0	4.8	2.6	468	chr3R	9319574	intron	CG8861 -	chr3R	9319808	intron	CG8861 -	chr3R	9320042	intron	CG8861 -	chr3R_15_9315001	chr3R_9315001	RAL-897
1562	chr3R	10231798	10231813	chr3R	10237375	10237375	mdg3	7	5575	0.5	3.5	2.0	2.3	5577	chr3R	10231798	intron	CG42795 +	chr3R	10234586	intron	CG42795 +	chr3R	10237375	intron	CG42795 +	chr3R_7_10230001	chr3R_10230001	RAL-897
1578	chr3R	11379234	11379267	chr3R	11388389	11388422	roo	5	9155	4.5	7.0	5.8	0.7	9188	chr3R	11379234	intron	pros +	chr3R	11383828	intron	pros +	chr3R	11388422	intron	pros +	chr3R_5_11380001	chr3R_11380001	RAL-897
1584	chr3R	11841077	11841098	chr3R	11846257	11846274	BS	6	5181	3.0	5.0	4.0	1.2	5197	chr3R	11841077	intron	CG6959 -	chr3R	11843676	intron	CG6959 -	chr3R	11846274	intron	CG6959 -	chr3R_6_11840001	chr3R_11840001	RAL-897
1589	chr3R	12022887	12022913	chr3R	12025063	12025089	pogo	9	2175	3.5	5.0	4.2	1.7	2202	chr3R	12022887	intergenic	not near genes	chr3R	12023988	intergenic	not near genes	chr3R	12025089	intergenic	not near genes	chr3R_9_12020001	chr3R_12020001	RAL-897
1604	chr3R	12780277	12780302	chr3R	12780390	12780415	BS	4	113	4.5	3.0	3.8	0.8	138	chr3R	12780277	intron	beat-Vc -	chr3R	12780346	intron	beat-Vc -	chr3R	12780415	intron	beat-Vc -	chr3R_4_12780001	chr3R_12780001	RAL-897
1608	chr3R	12920156	12920185	chr3R	12925359	12925388	copia	9	5200	4.0	4.5	4.2	1.7	5232	chr3R	12920156	intron	beat-Vb +	chr3R	12922772	intron	beat-Vb +	chr3R	12925388	intron	beat-Vb +	chr3R_9_12920001	chr3R_12920001	RAL-897
1612	chr3R	13135831	13135858	chr3R	13138006	13138033	pogo	12	2175	3.0	6.0	4.5	2.2	2202	chr3R	13135831	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136932	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138033	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_12_13135001	chr3R_13135001	RAL-897
1613	chr3R	13143041	13143060	chr3R	13148617	13148631	mdg3	7	5573	7.0	12.5	9.8	0.6	5590	chr3R	13143041	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145836	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148631	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_7_13145001	chr3R_13145001	RAL-897
1633	chr3R	14021649	14021677	chr3R	14023466	14023494	S-element	6	1815	4.0	3.5	3.8	1.2	1845	chr3R	14021649	intron	rdx -	chr3R	14022572	intron	rdx -	chr3R	14023494	intron	rdx -	chr3R_6_14020001	chr3R_14020001	RAL-897
1640	chr3R	14246410	14246416	chr3R	14247888	14247893	jockey	6	1483	3.5	4.0	3.8	1.2	1483	chr3R	14246410	intergenic	not near genes	chr3R	14247152	intergenic	not near genes	chr3R	14247893	intergenic	not near genes	chr3R_6_14245001	chr3R_14245001	RAL-897
1657	chr3R	15041425	15041457	chr3R	15045193	15045225	Doc	8	3768	1.5	4.0	2.8	2.1	3800	chr3R	15041425	intergenic	not near genes	chr3R	15043325	intergenic	not near genes	chr3R	15045225	intergenic	not near genes	chr3R_8_15040001	chr3R_15040001	RAL-897
1661	chr3R	15079807	15079838	chr3R	15080048	15080073	pogo	10	240	1.5	1.0	1.2	4.5	266	chr3R	15079807	3` UTR	CG6966 -	chr3R	15079940	3` UTR	CG6966 -	chr3R	15080073	3` UTR	CG6966 -	chr3R_10_15075001	chr3R_15075001	RAL-897
1666	chr3R	15162551	15162578	chr3R	15167318	15167345	F-element	11	4764	3.0	2.5	2.8	2.9	4794	chr3R	15162551	intron	Gyc88E +	chr3R	15164948	intron	Gyc88E +	chr3R	15167345	intron	Gyc88E +	chr3R_11_15160001	chr3R_15160001	RAL-897
1671	chr3R	15601163	15601196	chr3R	15608685	15608718	412	16	7520	10.5	6.5	8.5	1.7	7555	chr3R	15601163	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608718	intergenic	not near genes	chr3R_16_15600001	chr3R_15600001	RAL-897
1691	chr3R	16756324	16756345	chr3R	16762510	16762535	diver	9	6190	8.0	2.0	5.0	1.5	6211	chr3R	16756324	intron	bxd -	chr3R	16759430	intron	bxd -	chr3R	16762535	intron	bxd -	chr3R_9_16755001	chr3R_16755001	RAL-897
1698	chr3R	17294668	17294692	chr3R	17295096	17295120	BS	10	425	6.0	5.0	5.5	1.5	452	chr3R	17294668	intergenic	not near genes	chr3R	17294894	intergenic	not near genes	chr3R	17295120	intergenic	not near genes	chr3R_10_17290001	chr3R_17290001	RAL-897
1700	chr3R	17346694	17346704	chr3R	17348257	17348267	F-element	4	1563	1.5	6.5	4.0	0.8	1573	chr3R	17346694	intron	beat-IIa -	chr3R	17347480	intron	beat-IIa -	chr3R	17348267	intron	beat-IIa -	chr3R_4_17345001	chr3R_17345001	RAL-897
1701	chr3R	17346706	17346717	chr3R	17348254	17348279	F-element	5	1559	1.5	6.0	3.8	1.0	1573	chr3R	17346706	intron	beat-IIa -	chr3R	17347492	intron	beat-IIa -	chr3R	17348279	intron	beat-IIa -	chr3R_5_17345001	chr3R_17345001	RAL-897
1712	chr3R	17591286	17591320	chr3R	17591721	17591731	F-element	8	432	9.0	5.5	7.2	1.0	445	chr3R	17591286	intergenic	not near genes	chr3R	17591508	intergenic	not near genes	chr3R	17591731	intergenic	not near genes	chr3R_8_17590001	chr3R_17590001	RAL-897
1718	chr3R	17925852	17925876	chr3R	17927319	17927343	hobo	8	1465	9.5	9.0	9.2	0.8	1491	chr3R	17925852	intron	cpo +	chr3R	17926598	intron	cpo +	chr3R	17927343	intron	cpo +	chr3R_8_17925001	chr3R_17925001	RAL-897
1719	chr3R	17925879	17925884	chr3R	17927317	17927339	hobo	4	1457	7.0	8.5	7.8	0.5	1460	chr3R	17925879	intron	cpo +	chr3R	17926609	intron	cpo +	chr3R	17927339	intron	cpo +	chr3R_4_17925001	chr3R_17925001	RAL-897
1723	chr3R	18032783	18032795	chr3R	18040456	18040468	opus	4	7673	0.0	2.5	1.2	1.8	7685	chr3R	18032783	intergenic	not near genes	chr3R	18036626	intergenic	not near genes	chr3R	18040468	intergenic	not near genes	chr3R_4_18035001	chr3R_18035001	RAL-897
1729	chr3R	18606512	18606528	chr3R	18610744	18610758	F-element	4	4232	5.0	1.0	3.0	1.0	4246	chr3R	18606512	intron,intron	qin +,CG14304 -	chr3R	18608635	intron,intron	qin +,CG14304 -	chr3R	18610758	intron,intron	qin +,CG14304 -	chr3R_4_18605001	chr3R_18605001	RAL-897
1744	chr3R	19136411	19136429	chr3R	19139798	19139872	Bari1	5	3399	72.0	11.0	41.5	0.1	3461	chr3R	19136411	exon	Cyp12a4 +	chr3R	19138142	intergenic	not near genes	chr3R	19139872	3` UTR	Ppcs -	chr3R_5_19135001	chr3R_19135001	RAL-897
1746	chr3R	19193003	19193014	chr3R	19197304	19197314	F-element	4	4302	0.5	10.0	5.2	0.6	4311	chr3R	19193003	intron	CG31475 +	chr3R	19195158	intron	CG31475 +	chr3R	19197314	intron	CG31475 +	chr3R_4_19195001	chr3R_19195001	RAL-897
1762	chr3R	20109538	20109568	chr3R	20114744	20114774	copia	6	5206	2.0	4.0	3.0	1.5	5236	chr3R	20109538	intergenic	not near genes	chr3R	20112156	intergenic	not near genes	chr3R	20114774	intergenic	CG10887 +	chr3R_6_20110001	chr3R_20110001	RAL-897
1765	chr3R	20156715	20156716	chr3R	20165862	20165866	roo	5	9158	4.0	2.5	3.2	1.2	9151	chr3R	20156715	intergenic	not near genes	chr3R	20161290	intergenic	not near genes	chr3R	20165866	intergenic	not near genes	chr3R_5_20160001	chr3R_20160001	RAL-897
1767	chr3R	20266518	20266542	chr3R	20272989	20273013	Burdock	5	6471	1.5	4.0	2.8	1.3	6495	chr3R	20266518	intron	cic +	chr3R	20269766	intron	cic +	chr3R	20273013	intron	cic +	chr3R_5_20265001	chr3R_20265001	RAL-897
1773	chr3R	20506586	20506613	chr3R	20507389	20507403	BS	8	801	2.0	3.5	2.8	2.1	817	chr3R	20506586	intergenic	Or92a +	chr3R	20506994	intergenic	CG4288 -	chr3R	20507403	3` UTR	CG4288 -	chr3R_8_20505001	chr3R_20505001	RAL-897
1786	chr3R	20854474	20854517	chr3R	20859268	20859296	Doc	10	4784	5.0	4.0	4.5	1.8	4822	chr3R	20854474	intron	Ir93a -	chr3R	20856885	intron	Ir93a -	chr3R	20859296	exon	Ir93a -	chr3R_10_20855001	chr3R_20855001	RAL-897
1795	chr3R	21141678	21141704	chr3R	21150159	21150163	Tirant	15	8473	6.5	6.5	6.5	2.0	8485	chr3R	21141678	intron	SNF4Agamma +	chr3R	21145920	intron	SNF4Agamma +	chr3R	21150163	intron	SNF4Agamma +	chr3R_15_21145001	chr3R_21145001	RAL-897
1812	chr3R	21761126	21761151	chr3R	21768512	21768542	mdg1	10	7390	9.5	6.5	8.0	1.1	7416	chr3R	21761126	exon	CG42335 +	chr3R	21764834	intron	CG42335 +	chr3R	21768542	exon	CG42335 +	chr3R_10_21760001	chr3R_21760001	RAL-897
1820	chr3R	22234683	22234712	chr3R	22236002	22236031	pogo	8	1318	3.0	1.5	2.2	2.5	1348	chr3R	22234683	intron	SKIP +	chr3R	22235357	intron	SKIP +	chr3R	22236031	intron	SKIP +	chr3R_8_22235001	chr3R_22235001	RAL-897
1822	chr3R	22450543	22450579	chr3R	22453183	22453219	NOF	17	2637	5.5	5.5	5.5	2.6	2676	chr3R	22450543	intron	CG34376 +	chr3R	22451881	intron	CG34376 +	chr3R	22453219	intron	CG34376 +	chr3R_17_22450001	chr3R_22450001	RAL-897
1844	chr3R	22881198	22881222	chr3R	22884904	22884908	Doc	4	3700	1.0	2.0	1.5	1.6	3710	chr3R	22881198	intergenic	not near genes	chr3R	22883053	intergenic	not near genes	chr3R	22884908	intergenic	not near genes	chr3R_4_22880001	chr3R_22880001	RAL-897
1861	chr3R	23558402	23558429	chr3R	23560183	23560210	Bari1	7	1781	2.5	4.0	3.2	1.7	1808	chr3R	23558402	intron	beat-IV +	chr3R	23559306	intron	beat-IV +	chr3R	23560210	intron	beat-IV +	chr3R_7_23555001	chr3R_23555001	RAL-897
1870	chr3R	24072101	24072115	chr3R	24072522	24072535	jockey	4	424	6.5	1.0	3.8	0.8	434	chr3R	24072101	intron	4EHP -	chr3R	24072318	intron	4EHP -	chr3R	24072535	intron	4EHP -	chr3R_4_24070001	chr3R_24070001	RAL-897
1871	chr3R	24076915	24076948	chr3R	24078381	24078415	hobo	17	1465	7.5	7.0	7.2	2.1	1500	chr3R	24076915	intron	4EHP -	chr3R	24077665	intron	4EHP -	chr3R	24078415	intron	4EHP -	chr3R_17_24075001	chr3R_24075001	RAL-897
1873	chr3R	24207219	24207245	chr3R	24212288	24212321	flea	16	5074	8.0	7.5	7.8	1.8	5102	chr3R	24207219	intron	twin -	chr3R	24209770	intron	twin -	chr3R	24212321	intron	twin -	chr3R_16_24205001	chr3R_24205001	RAL-897
1875	chr3R	24493278	24493292	chr3R	24493507	24493521	BS	5	229	4.5	3.5	4.0	1.0	243	chr3R	24493278	intergenic	not near genes	chr3R	24493400	intergenic	not near genes	chr3R	24493521	intergenic	not near genes	chr3R_5_24490001	chr3R_24490001	RAL-897
1876	chr3R	24493302	24493310	chr3R	24493505	24493539	BS	7	222	1.5	3.5	2.5	2.0	237	chr3R	24493302	intergenic	not near genes	chr3R	24493420	intergenic	not near genes	chr3R	24493539	intergenic	not near genes	chr3R_7_24490001	chr3R_24490001	RAL-897
1880	chr3R	24730090	24730120	chr3R	24732467	24732480	Doc	12	2371	4.5	2.5	3.5	2.7	2390	chr3R	24730090	intron	tok +	chr3R	24731285	intron	tok +	chr3R	24732480	intron	tok +	chr3R_12_24730001	chr3R_24730001	RAL-897
1885	chr3R	24927128	24927164	chr3R	24931918	24931940	Doc	16	4789	1.0	2.5	1.8	5.7	4812	chr3R	24927128	intergenic	Trf4-2 +	chr3R	24929534	intergenic	not near genes	chr3R	24931940	intergenic	CG11771 +	chr3R_16_24925001	chr3R_24925001	RAL-897
1897	chr3R	25832693	25832719	chr3R	25841874	25841901	roo	11	9180	7.0	6.5	6.8	1.4	9208	chr3R	25832693	exon	alpha4GT2 +	chr3R	25837297	intron	alpha4GT2 +	chr3R	25841901	exon	alpha4GT2 +	chr3R_11_25835001	chr3R_25835001	RAL-897
1907	chr3R	26376326	26376335	chr3R	26385486	26385494	roo	5	9159	9.5	1.0	5.2	0.8	9168	chr3R	26376326	intergenic	not near genes	chr3R	26380910	intergenic	not near genes	chr3R	26385494	intergenic	not near genes	chr3R_5_26380001	chr3R_26380001	RAL-897
1908	chr3R	26376338	26376351	chr3R	26385484	26385508	roo	5	9152	5.5	1.0	3.2	1.2	9170	chr3R	26376338	intergenic	not near genes	chr3R	26380923	intergenic	not near genes	chr3R	26385508	intergenic	not near genes	chr3R_5_26380001	chr3R_26380001	RAL-897
1910	chr3R	26558328	26558358	chr3R	26565639	26565670	Stalker4	12	7303	3.0	5.5	4.2	2.3	7342	chr3R	26558328	intron	scrib +	chr3R	26561999	intron	scrib +	chr3R	26565670	intron	scrib +	chr3R_12_26560001	chr3R_26560001	RAL-897
1912	chr3R	26642731	26642760	chr3R	26643124	26643154	jockey	5	394	4.5	2.5	3.5	1.1	423	chr3R	26642731	intergenic	not near genes	chr3R	26642942	intergenic	not near genes	chr3R	26643154	intergenic	not near genes	chr3R_5_26640001	chr3R_26640001	RAL-897
1914	chr3R	26810553	26810586	chr3R	26811038	26811069	roo	8	482	6.5	3.5	5.0	1.3	516	chr3R	26810553	intron	Tl +	chr3R	26810811	intron	Tl +	chr3R	26811069	intron	Tl +	chr3R_8_26810001	chr3R_26810001	RAL-897
1921	chr3R	27140515	27140548	chr3R	27148124	27148158	412	17	7609	6.5	5.0	5.8	2.5	7643	chr3R	27140515	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148158	intron	CG6051 -	chr3R_17_27140001	chr3R_27140001	RAL-897
1925	chr3R	27342796	27342826	chr3R	27351372	27351407	Tirant	15	8580	1.5	5.5	3.5	3.3	8611	chr3R	27342796	intron	CG42534 +	chr3R	27347102	intron	CG42534 +	chr3R	27351407	intron	CG42534 +	chr3R_15_27345001	chr3R_27345001	RAL-897
1936	chr3R	27856764	27856787	chr3R	27858247	27858270	hopper2	9	1482	7.0	5.0	6.0	1.3	1506	chr3R	27856764	intron	CG34353 -	chr3R	27857517	intron	CG34353 -	chr3R	27858270	intron	CG34353 -	chr3R_9_27855001	chr3R_27855001	RAL-897
1937	chr3R	27862956	27862984	chr3R	27868258	27868285	Transpac	10	5301	4.5	5.5	5.0	1.7	5329	chr3R	27862956	intron	CG34353 -	chr3R	27865620	intron	CG34353 -	chr3R	27868285	intron	CG34353 -	chr3R_10_27865001	chr3R_27865001	RAL-897
1938	chr3R	27875699	27875732	chr3R	27882754	27882787	297	20	7055	6.5	4.0	5.2	3.2	7088	chr3R	27875699	intron	CG34353 -	chr3R	27879243	intron	CG34353 -	chr3R	27882787	intron	CG34353 -	chr3R_20_27875001	chr3R_27875001	RAL-897
1941	chr3R	28068493	28068532	chr3R	28073935	28073974	I-element	15	5440	2.0	6.5	4.2	2.9	5481	chr3R	28068493	intron	CG34362 +	chr3R	28071234	intron	CG34362 +	chr3R	28073974	intron	CG34362 +	chr3R_15_28070001	chr3R_28070001	RAL-897
1943	chr3R	28173668	28173701	chr3R	28181098	28181131	mdg1	8	7430	1.5	2.5	2.0	2.7	7463	chr3R	28173668	intron	CG34354 +	chr3R	28177400	intron	CG34354 +	chr3R	28181131	intron	CG34354 +	chr3R_8_28175001	chr3R_28175001	RAL-897
1945	chr3R	28253347	28253369	chr3R	28255857	28255879	jockey	15	2510	4.0	7.5	5.8	2.2	2532	chr3R	28253347	intergenic	not near genes	chr3R	28254613	intergenic	not near genes	chr3R	28255879	intergenic	not near genes	chr3R_15_28250001	chr3R_28250001	RAL-897
1946	chr3R	28302107	28302134	chr3R	28302546	28302573	jockey	10	438	4.0	6.0	5.0	1.7	466	chr3R	28302107	intergenic	not near genes	chr3R	28302340	intergenic	not near genes	chr3R	28302573	intergenic	not near genes	chr3R_10_28300001	chr3R_28300001	RAL-897
1958	chr3R	28758286	28758305	chr3R	28763903	28763922	roo	7	5617	4.0	0.0	2.0	2.3	5636	chr3R	28758286	intergenic	aqrs -	chr3R	28761104	intergenic	not near genes	chr3R	28763922	intergenic	not near genes	chr3R_7_28760001	chr3R_28760001	RAL-897
1959	chr3R	28792870	28792904	chr3R	28797965	28797995	jockey	21	5091	6.5	6.0	6.2	2.9	5125	chr3R	28792870	intergenic	not near genes	chr3R	28795432	intergenic	not near genes	chr3R	28797995	intergenic	not near genes	chr3R_21_28795001	chr3R_28795001	RAL-897
1970	chr3R	29079379	29079411	chr3R	29080751	29080783	NOF	15	1372	5.0	5.5	5.2	2.4	1404	chr3R	29079379	intron	CG11873 +	chr3R	29080081	intron	CG11873 +	chr3R	29080783	intron	CG11873 +	chr3R_15_29080001	chr3R_29080001	RAL-897
1976	chr3R	29319825	29319860	chr3R	29320144	29320171	jockey	6	313	0.5	3.5	2.0	2.0	346	chr3R	29319825	intergenic	Cnx99A -	chr3R	29319998	intergenic	Cnx99A -	chr3R	29320171	intergenic	not near genes	chr3R_6_29320001	chr3R_29320001	RAL-897
1979	chr3R	29406620	29406645	chr3R	29407899	29407929	jockey	11	1283	5.0	4.5	4.8	1.9	1309	chr3R	29406620	intron	Ptp99A +	chr3R	29407274	intron	Ptp99A +	chr3R	29407929	intron	Ptp99A +	chr3R_11_29405001	chr3R_29405001	RAL-897
1987	chr3R	29738263	29738270	chr3R	29739730	29739737	hobo	4	1466	5.0	4.0	4.5	0.7	1474	chr3R	29738263	intergenic	CG1969 +,CG7598 +	chr3R	29739000	intron	CG1969 +	chr3R	29739737	5` UTR	CG1969 +	chr3R_4_29735001	chr3R_29735001	RAL-897
1988	chr3R	29738271	29738300	chr3R	29739729	29739767	hobo	14	1464	3.0	4.0	3.5	3.1	1496	chr3R	29738271	intergenic	CG1969 +,CG7598 +	chr3R	29739019	intron	CG1969 +	chr3R	29739767	5` UTR	CG1969 +	chr3R_14_29735001	chr3R_29735001	RAL-897
1992	chr3R	29882034	29882053	chr3R	29891176	29891209	roo	5	9150	2.5	4.5	3.5	1.1	9175	chr3R	29882034	intron	CG31038 +	chr3R	29886622	intron	CG31038 +	chr3R	29891209	intron	CG31038 +	chr3R_5_29885001	chr3R_29885001	RAL-897
1996	chr3R	30084849	30084881	chr3R	30086315	30086348	hobo	16	1465	6.0	5.0	5.5	2.5	1499	chr3R	30084849	intron	sima +	chr3R	30085598	intron	sima +	chr3R	30086348	intron	sima +	chr3R_16_30085001	chr3R_30085001	RAL-897
1998	chr3R	30238763	30238792	chr3R	30239926	30239956	1360	4	1163	2.5	0.5	1.5	1.6	1193	chr3R	30238763	intergenic	not near genes	chr3R	30239360	intergenic	not near genes	chr3R	30239956	intergenic	not near genes	chr3R_4_30235001	chr3R_30235001	RAL-897
2002	chr3R	30317330	30317356	chr3R	30324922	30324948	roo	6	7592	2.0	7.0	4.5	1.1	7618	chr3R	30317330	intron	hdc +	chr3R	30321139	intron	hdc +	chr3R	30324948	intron	hdc +	chr3R_6_30320001	chr3R_30320001	RAL-897
2007	chr3R	30480473	30480513	chr3R	30482941	30482981	jockey	21	2466	2.5	4.0	3.2	5.0	2508	chr3R	30480473	intron	PH4alphaEFB +	chr3R	30481727	intron	PH4alphaEFB +	chr3R	30482981	intron	PH4alphaEFB +	chr3R_21_30480001	chr3R_30480001	RAL-897
2015	chr3R	30679517	30679551	chr3R	30686986	30687019	blood	14	7468	4.5	10.0	7.2	1.7	7502	chr3R	30679517	intergenic	not near genes	chr3R	30683268	intergenic	not near genes	chr3R	30687019	intergenic	not near genes	chr3R_14_30680001	chr3R_30680001	RAL-897
2016	chr3R	30818809	30818841	chr3R	30820374	30820406	1360	10	1564	2.5	0.0	1.2	4.5	1597	chr3R	30818809	intron	cindr +	chr3R	30819608	intron	cindr +	chr3R	30820406	intron	cindr +	chr3R_10_30815001	chr3R_30815001	RAL-897
2027	chr3R	31074229	31074256	chr3R	31081827	31081854	springer	10	7596	5.5	7.0	6.2	1.4	7625	chr3R	31074229	intron	Sox100B +	chr3R	31078042	intron	Sox100B +	chr3R	31081854	intron	Sox100B +	chr3R_10_31075001	chr3R_31075001	RAL-897
2031	chr3R	31279372	31279404	chr3R	31285562	31285594	diver	11	6189	6.0	4.0	5.0	1.8	6222	chr3R	31279372	intergenic	not near genes	chr3R	31282483	intergenic	not near genes	chr3R	31285594	intergenic	not near genes	chr3R_11_31280001	chr3R_31280001	RAL-897
2033	chr3R	31413087	31413121	chr3R	31418287	31418317	copia	11	5198	4.5	6.5	5.5	1.7	5230	chr3R	31413087	intron	Gprk2 +	chr3R	31415702	intron	Gprk2 +	chr3R	31418317	intron	Gprk2 +	chr3R_11_31415001	chr3R_31415001	RAL-897
2041	chr3R	31691539	31691548	chr3R	31696305	31696314	Doc	5	4765	10.0	14.5	12.2	0.4	4775	chr3R	31691539	intergenic	not near genes	chr3R	31693926	intergenic	not near genes	chr3R	31696314	intergenic	not near genes	chr3R_5_31690001	chr3R_31690001	RAL-897
2042	chr3R	31691551	31691563	chr3R	31696300	31696329	Doc	12	4754	7.0	13.0	10.0	1.1	4778	chr3R	31691551	intergenic	not near genes	chr3R	31693940	intergenic	not near genes	chr3R	31696329	intergenic	not near genes	chr3R_12_31690001	chr3R_31690001	RAL-897
2049	chr3R	31997990	31998025	chr3R	32005460	32005495	blood	9	7469	3.5	5.0	4.2	1.7	7505	chr3R	31997990	intron	heph -	chr3R	32001742	intron	heph -	chr3R	32005495	intron	heph -	chr3R_9_32000001	chr3R_32000001	RAL-897
2050	chr4	76489	76529	chr4	81932	81953	I-element	5	5435	2.0	2.5	2.2	1.6	5464	chr4	76489	intron	pan +	chr4	79221	intron	pan +	chr4	81953	intron	pan +	chr4_5_75001	chr4_75001	RAL-897
2052	chr4	671604	671635	chr4	680186	680217	Tirant	19	8579	2.0	4.5	3.2	4.5	8613	chr4	671604	intron	CG11360 +	chr4	675910	intron	CG11360 +	chr4	680217	intron	CG11360 +	chr4_19_675001	chr4_675001	RAL-897
2054	chr4	896644	896677	chr4	898307	898340	INE-1	4	1664	28.5	15.5	22.0	0.2	1696	chr4	896644	intron	unc-13 -	chr4	897492	intron	unc-13 -	chr4	898340	intron	unc-13 -	chr4_4_895001	chr4_895001	RAL-897
2056	chrX	295856	295879	chrX	303476	303499	412	5	7619	3.5	4.0	3.8	1.0	7643	chrX	295856	intron	CG3777 +	chrX	299678	intron	CG3777 +	chrX	303499	intron	CG3777 +	chrX_5_295001	chrX_295001	RAL-897
2057	chrX	318478	318499	chrX	323564	323585	flea	4	5085	2.0	4.0	3.0	1.0	5107	chrX	318478	intron,intron	CG3777 +,CG32816 -	chrX	321032	intron,intron	CG3777 +,CG32816 -	chrX	323585	intron,intron	CG3777 +,CG32816 -	chrX_4_320001	chrX_320001	RAL-897
2058	chrX	428416	428446	chrX	434601	434631	3S18	6	6185	7.0	2.5	4.8	1.0	6215	chrX	428416	intron	CG32816 -	chrX	431524	intron	CG32816 -	chrX	434631	intron	CG32816 -	chrX_6_430001	chrX_430001	RAL-897
2059	chrX	551432	551450	chrX	558994	559011	412	7	7560	7.0	8.0	7.5	0.8	7579	chrX	551432	intron	Appl +	chrX	555222	intron	Appl +	chrX	559011	intron	Appl +	chrX_7_555001	chrX_555001	RAL-897
2060	chrX	551451	551453	chrX	558986	559015	412	4	7554	6.5	5.5	6.0	0.6	7564	chrX	551451	intron	Appl +	chrX	555233	intron	Appl +	chrX	559015	intron	Appl +	chrX_4_555001	chrX_555001	RAL-897
2063	chrX	827602	827615	chrX	835394	835407	roo	6	7792	9.5	6.0	7.8	0.7	7805	chrX	827602	intron	CG43867 -	chrX	831504	intron	CG43867 -	chrX	835407	intron	CG43867 -	chrX_6_830001	chrX_830001	RAL-897
2064	chrX	827616	827632	chrX	835391	835424	roo	9	7789	5.5	4.5	5.0	1.5	7808	chrX	827616	intron	CG43867 -	chrX	831520	intron	CG43867 -	chrX	835424	intron	CG43867 -	chrX_9_830001	chrX_830001	RAL-897
2066	chrX	906701	906734	chrX	908490	908523	S-element	14	1787	2.5	7.0	4.8	2.4	1822	chrX	906701	intron	CG43867 -	chrX	907612	intron	CG43867 -	chrX	908523	intron	CG43867 -	chrX_14_905001	chrX_905001	RAL-897
2070	chrX	1357774	1357808	chrX	1367944	1367978	Doc	13	10167	5.5	3.0	4.2	2.5	10204	chrX	1357774	intergenic	png -	chrX	1362876	intergenic	not near genes	chrX	1367978	intergenic	not near genes	chrX_13_1360001	chrX_1360001	RAL-897
2073	chrX	1518042	1518062	chrX	1523443	1523463	jockey	6	5400	4.0	10.0	7.0	0.8	5421	chrX	1518042	intergenic	inc +	chrX	1520752	intergenic	not near genes	chrX	1523463	intergenic	not near genes	chrX_6_1520001	chrX_1520001	RAL-897
2074	chrX	1627975	1628006	chrX	1635442	1635463	gtwin	13	7465	2.5	5.5	4.0	2.6	7488	chrX	1627975	intron,intron	Mur2B -,br +	chrX	1631719	intron,intron	Mur2B -,br +	chrX	1635463	intron,intron	Mur2B -,br +	chrX_13_1630001	chrX_1630001	RAL-897
2076	chrX	1954886	1954918	chrX	1962826	1962838	Stalker2	4	7932	4.0	3.0	3.5	0.9	7952	chrX	1954886	intron	Hr4 +	chrX	1958862	intron	Hr4 +	chrX	1962838	intron	Hr4 +	chrX_4_1955001	chrX_1955001	RAL-897
2081	chrX	2399837	2399867	chrX	2408188	2408190	roo	9	8343	3.5	2.0	2.8	2.4	8353	chrX	2399837	intergenic	not near genes	chrX	2404014	intergenic	not near genes	chrX	2408190	intergenic	not near genes	chrX_9_2400001	chrX_2400001	RAL-897
2083	chrX	2664388	2664396	chrX	2665534	2665542	1360	4	1146	3.0	3.5	3.2	1.0	1154	chrX	2664388	intron	sgg +	chrX	2664965	intron	sgg +	chrX	2665542	intron	sgg +	chrX_4_2660001	chrX_2660001	RAL-897
2084	chrX	2664403	2664418	chrX	2665531	2665564	1360	4	1142	1.5	3.0	2.2	1.2	1161	chrX	2664403	intron	sgg +	chrX	2664984	intron	sgg +	chrX	2665564	intron	sgg +	chrX_4_2660001	chrX_2660001	RAL-897
2086	chrX	2844902	2844930	chrX	2852311	2852340	mdg1	6	7410	1.0	2.5	1.8	2.1	7438	chrX	2844902	intron	kirre +	chrX	2848621	intron	kirre +	chrX	2852340	intron	kirre +	chrX_6_2845001	chrX_2845001	RAL-897
2089	chrX	3058020	3058043	chrX	3058261	3058272	pogo	4	238	3.0	2.5	2.8	1.1	252	chrX	3058020	intron	kirre +	chrX	3058146	intron	kirre +	chrX	3058272	intron	kirre +	chrX_4_3055001	chrX_3055001	RAL-897
2090	chrX	3075638	3075665	chrX	3080944	3080971	Transpac	11	5304	3.0	4.0	3.5	2.4	5333	chrX	3075638	intron	kirre +	chrX	3078304	intron	kirre +	chrX	3080971	intron	kirre +	chrX_11_3075001	chrX_3075001	RAL-897
2095	chrX	3218507	3218524	chrX	3227656	3227673	roo	6	9149	1.0	2.0	1.5	2.4	9166	chrX	3218507	intron	dnc +	chrX	3223090	intron	dnc +	chrX	3227673	intron	dnc +	chrX_6_3220001	chrX_3220001	RAL-897
2098	chrX	3493098	3493124	chrX	3502257	3502282	roo	12	9158	3.5	1.5	2.5	3.4	9184	chrX	3493098	intron,intron	CR44999 +,Gas8 -	chrX	3497690	intron,intron	CR44999 +,Gas8 -	chrX	3502282	intron,intron	CR44999 +,Gas8 -	chrX_12_3495001	chrX_3495001	RAL-897
2101	chrX	3597551	3597580	chrX	3619719	3619744	roo	11	22167	3.0	2.5	2.8	2.9	22193	chrX	3597551	intron	AstA-R1 +	chrX	3608648	intron	AstA-R1 +	chrX	3619744	intron	AstA-R1 +	chrX_11_3605001	chrX_3605001	RAL-897
2103	chrX	3726772	3726797	chrX	3730169	3730194	NOF	10	3396	1.5	5.0	3.2	2.4	3422	chrX	3726772	intron	tlk +	chrX	3728483	intron	tlk +	chrX	3730194	intron	tlk +	chrX_10_3725001	chrX_3725001	RAL-897
2109	chrX	3986862	3986894	chrX	3994495	3994523	412	12	7632	2.5	3.5	3.0	3.0	7661	chrX	3986862	intergenic	not near genes	chrX	3990692	intergenic	not near genes	chrX	3994523	intergenic	not near genes	chrX_12_3990001	chrX_3990001	RAL-897
2116	chrX	4700392	4700412	chrX	4700734	4700755	jockey	6	343	5.0	3.5	4.2	1.2	363	chrX	4700392	3` UTR	ctp +	chrX	4700574	3` UTR	ctp +	chrX	4700755	3` UTR	ctp +	chrX_6_4700001	chrX_4700001	RAL-897
2117	chrX	4731818	4731832	chrX	4736907	4736925	jockey	8	5092	8.0	6.5	7.2	1.0	5107	chrX	4731818	intergenic	not near genes	chrX	4734372	intergenic	not near genes	chrX	4736925	intergenic	not near genes	chrX_8_4730001	chrX_4730001	RAL-897
2118	chrX	4763249	4763280	chrX	4763737	4763768	Stalker4	16	487	4.5	3.5	4.0	3.2	519	chrX	4763249	intergenic	not near genes	chrX	4763508	intergenic	not near genes	chrX	4763768	intergenic	not near genes	chrX_16_4760001	chrX_4760001	RAL-897
2120	chrX	4792391	4792404	chrX	4792821	4792837	jockey	4	432	4.0	10.5	7.2	0.5	446	chrX	4792391	intergenic	not near genes	chrX	4792614	intergenic	not near genes	chrX	4792837	intergenic	not near genes	chrX_4_4790001	chrX_4790001	RAL-897
2121	chrX	4827973	4827996	chrX	4835343	4835362	Stalker4	6	7370	8.5	4.5	6.5	0.8	7389	chrX	4827973	intergenic	not near genes	chrX	4831668	intergenic	not near genes	chrX	4835362	intergenic	not near genes	chrX_6_4830001	chrX_4830001	RAL-897
2123	chrX	4990050	4990075	chrX	4997264	4997288	roo	6	7214	1.5	2.0	1.8	2.1	7238	chrX	4990050	intron	CR44833 -	chrX	4993669	intron	CR44833 -	chrX	4997288	intron	CR44833 -	chrX_6_4990001	chrX_4990001	RAL-897
2124	chrX	5096274	5096304	chrX	5103839	5103868	springer	6	7564	4.5	4.0	4.2	1.2	7594	chrX	5096274	intron,intron	CG15465 +,rg +	chrX	5100071	intron,intron	CG15465 +,rg +	chrX	5103868	intron,intron	CG15465 +,rg +	chrX_6_5100001	chrX_5100001	RAL-897
2129	chrX	5338710	5338739	chrX	5339963	5339985	jockey	8	1246	3.5	1.5	2.5	2.3	1275	chrX	5338710	intergenic	not near genes	chrX	5339348	intergenic	not near genes	chrX	5339985	intergenic	SK +	chrX_8_5335001	chrX_5335001	RAL-897
2137	chrX	5883812	5883841	chrX	5884053	5884082	pogo	8	240	1.5	4.0	2.8	2.1	270	chrX	5883812	intron	CR45668 -	chrX	5883947	intron	CR45668 -	chrX	5884082	intron	CR45668 -	chrX_8_5880001	chrX_5880001	RAL-897
2138	chrX	5884166	5884193	chrX	5884407	5884419	pogo	12	239	3.5	3.0	3.2	2.9	253	chrX	5884166	intron	CR45668 -	chrX	5884292	intron	CR45668 -	chrX	5884419	intron	CR45668 -	chrX_12_5880001	chrX_5880001	RAL-897
2143	chrX	6171581	6171610	chrX	6179014	6179043	Quasimodo	11	7432	2.5	3.0	2.8	2.9	7462	chrX	6171581	intron	Ca-alpha1T -	chrX	6175312	intron	Ca-alpha1T -	chrX	6179043	intron	Ca-alpha1T -	chrX_11_6175001	chrX_6175001	RAL-897
2148	chrX	6335214	6335244	chrX	6337719	6337754	Tirant	13	2509	0.5	7.5	4.0	2.6	2540	chrX	6335214	intergenic	not near genes	chrX	6336484	intergenic	not near genes	chrX	6337754	intergenic	CG3842 +	chrX_13_6335001	chrX_6335001	RAL-897
2149	chrX	6392870	6392899	chrX	6397633	6397651	Doc	9	4761	5.5	5.0	5.2	1.5	4781	chrX	6392870	intergenic	not near genes	chrX	6395260	intergenic	not near genes	chrX	6397651	intergenic	not near genes	chrX_9_6395001	chrX_6395001	RAL-897
2150	chrX	6562817	6562820	chrX	6571299	6571302	Tirant	5	8482	8.0	4.5	6.2	0.7	8485	chrX	6562817	intron	CG34417 +	chrX	6567060	intron	CG34417 +	chrX	6571302	intron	CG34417 +	chrX_5_6565001	chrX_6565001	RAL-897
2151	chrX	6562821	6562851	chrX	6571298	6571333	Tirant	17	8477	4.0	4.5	4.2	3.3	8512	chrX	6562821	intron	CG34417 +	chrX	6567077	intron	CG34417 +	chrX	6571333	intron	CG34417 +	chrX_17_6565001	chrX_6565001	RAL-897
2157	chrX	7023603	7023634	chrX	7030993	7031014	Tabor	11	7388	6.0	2.0	4.0	2.2	7411	chrX	7023603	intron	CG12541 -	chrX	7027308	intron	CG12541 -	chrX	7031014	intron	CG12541 -	chrX_11_7025001	chrX_7025001	RAL-897
2160	chrX	7125244	7125278	chrX	7134403	7134437	roo	13	9158	1.0	3.5	2.2	4.1	9193	chrX	7125244	intergenic	not near genes	chrX	7129840	intergenic	not near genes	chrX	7134437	intergenic	not near genes	chrX_13_7125001	chrX_7125001	RAL-897
2165	chrX	7702912	7702936	chrX	7703338	7703361	jockey	5	433	3.5	7.5	5.5	0.8	449	chrX	7702912	intron	CHES-1-like -	chrX	7703136	intron	CHES-1-like -	chrX	7703361	intron	CHES-1-like -	chrX_5_7700001	chrX_7700001	RAL-897
2169	chrX	8031422	8031439	chrX	8035730	8035735	Juan	5	4306	4.5	1.0	2.8	1.3	4313	chrX	8031422	intergenic	not near genes	chrX	8033578	intergenic	not near genes	chrX	8035735	intergenic	CG2233 -	chrX_5_8030001	chrX_8030001	RAL-897
2176	chrX	8922326	8922361	chrX	8922760	8922795	jockey	13	433	3.0	4.0	3.5	2.9	469	chrX	8922326	intron	rdgA +	chrX	8922560	intron	rdgA +	chrX	8922795	intron	rdgA +	chrX_13_8920001	chrX_8920001	RAL-897
2177	chrX	8948763	8948782	chrX	8956272	8956292	roo	5	7510	4.0	2.5	3.2	1.2	7529	chrX	8948763	intron	rdgA +	chrX	8952528	intron	rdgA +	chrX	8956292	intron	rdgA +	chrX_5_8950001	chrX_8950001	RAL-897
2178	chrX	8948785	8948792	chrX	8956271	8956302	roo	5	7505	4.0	2.0	3.0	1.2	7517	chrX	8948785	intron	rdgA +	chrX	8952544	intron	rdgA +	chrX	8956302	intron	rdgA +	chrX_5_8950001	chrX_8950001	RAL-897
2180	chrX	9508132	9508167	chrX	9509649	9509685	jockey	19	1517	1.5	3.0	2.2	5.9	1553	chrX	9508132	intron	CG32700 -	chrX	9508908	intron	CG32700 -	chrX	9509685	intron	CG32700 -	chrX_19_9505001	chrX_9505001	RAL-897
2181	chrX	9575803	9575823	chrX	9576126	9576143	mdg3	9	323	3.5	7.5	5.5	1.4	340	chrX	9575803	intron,exon	CG32699 -,CG42395 -	chrX	9575973	intron,intron	CG32699 -,CG42395 -	chrX	9576143	intron,5` UTR	CG32699 -,CG42395 -	chrX_9_9575001	chrX_9575001	RAL-897
2183	chrX	10138223	10138245	chrX	10145727	10145748	412	8	7503	2.5	2.0	2.2	2.5	7525	chrX	10138223	intron,intron	RhoU +,CR44894 -	chrX	10141986	intron,intron	RhoU +,CR44894 -	chrX	10145748	intron,intron	RhoU +,CR44894 -	chrX_8_10140001	chrX_10140001	RAL-897
2188	chrX	10550855	10550889	chrX	10552322	10552356	hobo	13	1467	4.0	1.5	2.8	3.4	1501	chrX	10550855	intron	spri -	chrX	10551606	intron	spri -	chrX	10552356	intron	spri -	chrX_13_10550001	chrX_10550001	RAL-897
2189	chrX	10686055	10686082	chrX	10691192	10691219	roo	5	5137	1.5	5.0	3.2	1.2	5164	chrX	10686055	intron	X11Lbeta +	chrX	10688637	intron	X11Lbeta +	chrX	10691219	intron	X11Lbeta +	chrX_5_10685001	chrX_10685001	RAL-897
2191	chrX	10772686	10772696	chrX	10772769	10772779	Tirant	4	83	5.0	5.0	5.0	0.7	93	chrX	10772686	intron	CG15211 +	chrX	10772732	intron	CG15211 +	chrX	10772779	intron	CG15211 +	chrX_4_10770001	chrX_10770001	RAL-897
2193	chrX	11096002	11096029	chrX	11103104	11103129	HMS-Beagle	6	7100	1.0	4.5	2.8	1.6	7127	chrX	11096002	intergenic	not near genes	chrX	11099566	intergenic	not near genes	chrX	11103129	intron	CG42249 +	chrX_6_11095001	chrX_11095001	RAL-897
2195	chrX	11184254	11184272	chrX	11189330	11189348	flea	6	5076	5.5	2.0	3.8	1.2	5094	chrX	11184254	intergenic	not near genes	chrX	11186801	intergenic	not near genes	chrX	11189348	intergenic	not near genes	chrX_6_11185001	chrX_11185001	RAL-897
2196	chrX	11268560	11268596	chrX	11270053	11270087	hopper2	15	1490	3.5	5.5	4.5	2.7	1527	chrX	11268560	intron	CG44422 -	chrX	11269324	intron	CG44422 -	chrX	11270087	intron	CG44422 -	chrX_15_11265001	chrX_11265001	RAL-897
2197	chrX	11312057	11312093	chrX	11319410	11319419	Stalker2	12	7349	3.5	1.5	2.5	3.4	7362	chrX	11312057	intergenic	not near genes	chrX	11315738	intergenic	not near genes	chrX	11319419	intergenic	not near genes	chrX_12_11315001	chrX_11315001	RAL-897
2198	chrX	11633422	11633447	chrX	11640473	11640501	297	9	7054	4.5	5.5	5.0	1.5	7079	chrX	11633422	intron	Ptp10D +	chrX	11636962	intron	Ptp10D +	chrX	11640501	intron	Ptp10D +	chrX_9_11635001	chrX_11635001	RAL-897
2203	chrX	12168136	12168160	chrX	12173578	12173600	I-element	4	5437	3.0	5.0	4.0	0.8	5464	chrX	12168136	intron	Ten-a +	chrX	12170868	intron	Ten-a +	chrX	12173600	intron	Ten-a +	chrX_4_12170001	chrX_12170001	RAL-897
2207	chrX	12381891	12381903	chrX	12385793	12385805	flea	5	3902	0.5	9.5	5.0	0.8	3914	chrX	12381891	intergenic	not near genes	chrX	12383848	intergenic	not near genes	chrX	12385805	intergenic	not near genes	chrX_5_12380001	chrX_12380001	RAL-897
2217	chrX	13401486	13401511	chrX	13401838	13401863	jockey	5	352	2.0	3.5	2.8	1.3	377	chrX	13401486	intergenic	CG1673 +,CG12725 -	chrX	13401674	intergenic	CG12725 -,CG1673 +	chrX	13401863	3` UTR	CG12725 -	chrX_5_13400001	chrX_13400001	RAL-897
2218	chrX	13429480	13429490	chrX	13430628	13430639	jockey	4	1148	0.0	5.5	2.8	1.1	1159	chrX	13429480	intergenic	not near genes	chrX	13430060	intergenic	not near genes	chrX	13430639	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-897
2220	chrX	13463646	13463670	chrX	13469222	13469247	mdg3	8	5576	2.5	1.0	1.8	2.9	5601	chrX	13463646	intron	Neto +	chrX	13466446	intron	Neto +	chrX	13469247	intron	Neto +	chrX_8_13465001	chrX_13465001	RAL-897
2224	chrX	13937977	13938008	chrX	13941247	13941278	I-element	8	3271	2.0	0.5	1.2	3.6	3301	chrX	13937977	intron	mamo -	chrX	13939628	intron	mamo -	chrX	13941278	intron	mamo -	chrX_8_13935001	chrX_13935001	RAL-897
2225	chrX	14105025	14105053	chrX	14114176	14114186	roo	14	9148	7.0	5.0	6.0	2.0	9161	chrX	14105025	intergenic	not near genes	chrX	14109606	intergenic	not near genes	chrX	14114186	5` UTR	CR44657 +	chrX_14_14105001	chrX_14105001	RAL-897
2226	chrX	14157596	14157618	chrX	14163249	14163275	297	5	5656	0.5	0.5	0.5	3.3	5679	chrX	14157596	intergenic	not near genes	chrX	14160436	intergenic	not near genes	chrX	14163275	intergenic	not near genes	chrX_5_14160001	chrX_14160001	RAL-897
2230	chrX	14636459	14636493	chrX	14641900	14641934	I-element	15	5436	5.5	2.5	4.0	3.0	5475	chrX	14636459	intron	NetA -	chrX	14639196	intron	NetA -	chrX	14641934	intron	NetA -	chrX_15_14635001	chrX_14635001	RAL-897
2232	chrX	14778032	14778049	chrX	14782829	14782846	Doc	5	4797	3.0	0.5	1.8	1.8	4814	chrX	14778032	intergenic	CG5347 +	chrX	14780439	intergenic	not near genes	chrX	14782846	intergenic	Ag5r2 -	chrX_5_14780001	chrX_14780001	RAL-897
2233	chrX	14818777	14818797	chrX	14823980	14823997	copia	11	5202	4.5	3.5	4.0	2.2	5220	chrX	14818777	intron	rut -	chrX	14821387	intron	rut -	chrX	14823997	intron	rut -	chrX_11_14820001	chrX_14820001	RAL-897
2235	chrX	14936860	14936888	chrX	14946117	14946144	roo	11	9257	2.5	3.5	3.0	2.8	9284	chrX	14936860	intron	pdgy -	chrX	14941502	intron	pdgy -	chrX	14946144	intron	pdgy -	chrX_11_14940001	chrX_14940001	RAL-897
2242	chrX	15413051	15413085	chrX	15417353	15417360	Juan	10	4297	6.5	3.0	4.8	1.7	4309	chrX	15413051	intron	Cngl -	chrX	15415206	intron	Cngl -	chrX	15417360	intron	Cngl -	chrX_10_15415001	chrX_15415001	RAL-897
2243	chrX	15435692	15435705	chrX	15436123	15436138	rover	6	432	3.0	3.5	3.2	1.4	446	chrX	15435692	intron	Cngl -	chrX	15435915	intron	Cngl -	chrX	15436138	intron	Cngl -	chrX_6_15435001	chrX_15435001	RAL-897
2254	chrX	16492645	16492672	chrX	16498222	16498249	mdg3	8	5577	3.5	1.0	2.2	2.5	5604	chrX	16492645	intron	para -	chrX	16495447	intron	para -	chrX	16498249	intron	para -	chrX_8_16495001	chrX_16495001	RAL-897
2262	chrX	17195208	17195236	chrX	17200290	17200322	flea	6	5084	3.5	2.0	2.8	1.6	5114	chrX	17195208	3` UTR	baz +	chrX	17197765	3` UTR	baz +	chrX	17200322	3` UTR	baz +	chrX_6_17195001	chrX_17195001	RAL-897
2270	chrX	17556962	17556977	chrX	17557446	17557449	mdg1	4	480	3.5	6.0	4.8	0.7	487	chrX	17556962	intron	CG43658 -	chrX	17557206	intron	CG43658 -	chrX	17557449	intron	CG43658 -	chrX_4_17555001	chrX_17555001	RAL-897
2272	chrX	17792953	17792976	chrX	17796251	17796274	flea	7	3296	5.0	5.0	5.0	1.2	3321	chrX	17792953	intron	OdsH +	chrX	17794614	intron	OdsH +	chrX	17796274	intron	OdsH +	chrX_7_17790001	chrX_17790001	RAL-897
2275	chrX	18194066	18194094	chrX	18194600	18194629	BS	17	535	0.5	5.0	2.8	4.5	563	chrX	18194066	intron	Frq2 +	chrX	18194348	intron	Frq2 +	chrX	18194629	intron	Frq2 +	chrX_17_18190001	chrX_18190001	RAL-897
2277	chrX	18429505	18429527	chrX	18434816	18434838	Transpac	7	5311	2.0	2.5	2.2	2.2	5333	chrX	18429505	intergenic	not near genes	chrX	18432172	intergenic	not near genes	chrX	18434838	intergenic	not near genes	chrX_7_18430001	chrX_18430001	RAL-897
2290	chrX	19136552	19136563	chrX	19143472	19143483	412	5	6920	5.0	2.5	3.8	1.0	6931	chrX	19136552	intergenic	not near genes	chrX	19140018	intergenic	not near genes	chrX	19143483	3` UTR	RhoGAP18B -	chrX_5_19140001	chrX_19140001	RAL-897
2294	chrX	19356993	19357019	chrX	19358424	19358460	NOF	5	1439	1.5	3.5	2.5	1.4	1467	chrX	19356993	intron	kek5 +	chrX	19357726	intron	kek5 +	chrX	19358460	intron	kek5 +	chrX_5_19355001	chrX_19355001	RAL-897
2295	chrX	19380157	19380188	chrX	19380398	19380429	pogo	7	241	4.0	3.0	3.5	1.6	272	chrX	19380157	intron	kek5 +	chrX	19380293	intron	kek5 +	chrX	19380429	intron	kek5 +	chrX_7_19380001	chrX_19380001	RAL-897
2296	chrX	19472130	19472161	chrX	19472689	19472729	jockey	12	559	5.0	2.5	3.8	2.5	599	chrX	19472130	intergenic	kek5 +	chrX	19472430	intergenic	not near genes	chrX	19472729	intergenic	not near genes	chrX_12_19470001	chrX_19470001	RAL-897
2300	chrX	19710074	19710104	chrX	19711860	19711890	S-element	8	1785	2.0	5.5	3.8	1.7	1816	chrX	19710074	intron	meso18E -	chrX	19710982	intron	meso18E -	chrX	19711890	intron	meso18E -	chrX_8_19710001	chrX_19710001	RAL-897
2316	chrX	20377345	20377350	chrX	20378788	20378808	hobo	6	1458	9.0	4.0	6.5	0.8	1463	chrX	20377345	intergenic	not near genes	chrX	20378076	intergenic	not near genes	chrX	20378808	intergenic	not near genes	chrX_6_20375001	chrX_20375001	RAL-897
2319	chrX	20504146	20504156	chrX	20505654	20505661	transib2	7	1516	4.0	8.0	6.0	1.0	1515	chrX	20504146	intron	RhoGAP19D -	chrX	20504904	intron	RhoGAP19D -	chrX	20505661	intron	RhoGAP19D -	chrX_7_20500001	chrX_20500001	RAL-897
2323	chrX	20836733	20836751	chrX	20844335	20844353	roo	6	7600	3.0	3.5	3.2	1.4	7620	chrX	20836733	intron	shakB -	chrX	20840543	intron	shakB -	chrX	20844353	intron	shakB -	chrX_6_20840001	chrX_20840001	RAL-897
2324	chrX	20940719	20940756	chrX	20942188	20942225	hobo	16	1467	2.0	4.5	3.2	3.8	1506	chrX	20940719	intergenic	not near genes	chrX	20941472	intergenic	not near genes	chrX	20942225	intergenic	not near genes	chrX_16_20940001	chrX_20940001	RAL-897
2328	chrX	21086129	21086163	chrX	21087158	21087192	jockey	12	1027	3.5	1.5	2.5	3.4	1063	chrX	21086129	intergenic	not near genes	chrX	21086660	intergenic	not near genes	chrX	21087192	intergenic	not near genes	chrX_12_21085001	chrX_21085001	RAL-897
2334	chrX	21458699	21458725	chrX	21464135	21464161	Ivk	5	5436	0.0	2.5	1.2	2.3	5462	chrX	21458699	intergenic	not near genes	chrX	21461430	intergenic	not near genes	chrX	21464161	intergenic	not near genes	chrX_5_21460001	chrX_21460001	RAL-897
2340	chrX	22522625	22522656	chrX	22525445	22525474	NOF	6	2820	2.0	1.5	1.8	2.1	2849	chrX	22522625	intron	CG17600 +	chrX	22524050	intron	CG17600 +	chrX	22525474	intron	CG17600 +	chrX_6_22520001	chrX_22520001	RAL-897
2342	chrX	22771507	22771538	chrX	22774798	22774829	297	14	3290	2.5	2.5	2.5	4.0	3322	chrX	22771507	intron	CR44997 +	chrX	22773168	intron	CR44997 +	chrX	22774829	intron	CR44997 +	chrX_14_22770001	chrX_22770001	RAL-897
2345	chrX	22967396	22967515	chrX	23154547	23154691	diver	4	187164	2.0	6.5	4.2	0.8	187295	chrX	22967396	intergenic	not near genes	chrX	23061044	intergenic	not near genes	chrX	23154691	intergenic	not near genes	chrX_4_23060001	chrX_23060001	RAL-897
2346	chrX	22987103	22987133	chrX	22989762	22989791	Burdock	6	2657	1.5	1.5	1.5	2.4	2688	chrX	22987103	intron,intron	stnA -,stnB -	chrX	22988447	intron,intron	stnA -,stnB -	chrX	22989791	intron,intron	stnA -,stnB -	chrX_6_22985001	chrX_22985001	RAL-897
2348	chrX	22996315	22996340	chrX	23003547	23003571	roo	4	7228	2.5	1.5	2.0	1.3	7256	chrX	22996315	intron,intron	stnA -,stnB -	chrX	22999943	intron,intron	stnA -,stnB -	chrX	23003571	intron,intron	stnA -,stnB -	chrX_4_22995001	chrX_22995001	RAL-897
2349	chrX	23036382	23036412	chrX	23037783	23037812	pogo	8	1401	2.0	1.0	1.5	3.2	1430	chrX	23036382	intron	CG12061 +	chrX	23037097	intron	CG12061 +	chrX	23037812	intron	CG12061 +	chrX_8_23035001	chrX_23035001	RAL-897