SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47458 47489 chr2L 52563 52593 jockey 14 5105 8.0 8.0 8.0 1.6 5135 chr2L 47458 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52593 intron Cda5 - chr2L_14_50001 chr2L_50001 RAL-897 2 chr2L 126943 126976 chr2L 127024 127056 9 79 3.5 4.5 4.0 1.8 113 chr2L 126943 intron,intron CG11455 +,CG3164 - chr2L 127000 intron,intron CG11455 +,CG3164 - chr2L 127056 intron,intron CG11455 +,CG3164 - chr2L_9_125001 chr2L_125001 RAL-897 3 chr2L 135595 135630 chr2L 135671 135692 13 73 4.5 4.5 4.5 2.4 97 chr2L 135595 intron,5` UTR CG11455 +,CR44185 + chr2L 135644 intron,5` UTR CG11455 +,CR44185 + chr2L 135692 intron,5` UTR CG11455 +,CR44185 + chr2L_13_135001 chr2L_135001 RAL-897 4 chr2L 249581 249613 chr2L 249703 249735 11 121 1.0 2.0 1.5 4.4 154 chr2L 249581 intron,5` UTR kis -,CR44218 + chr2L 249658 intron,5` UTR kis -,CR44218 + chr2L 249735 intron,5` UTR kis -,CR44218 + chr2L_11_245001 chr2L_245001 RAL-897 5 chr2L 297686 297719 chr2L 297786 297819 9 99 7.5 5.5 6.5 1.2 133 chr2L 297686 intergenic Pi3K21B +,Hop + chr2L 297752 intergenic Pi3K21B +,Hop + chr2L 297819 intergenic Pi3K21B +,Hop + chr2L_9_295001 chr2L_295001 RAL-897 6 chr2L 314125 314158 chr2L 314202 314235 16 77 3.0 2.5 2.8 4.2 110 chr2L 314125 intron Plc21C + chr2L 314180 intron Plc21C + chr2L 314235 intron Plc21C + chr2L_16_310001 chr2L_310001 RAL-897 7 chr2L 323453 323477 chr2L 323531 323547 9 74 7.5 6.5 7.0 1.1 94 chr2L 323453 intron Plc21C + chr2L 323500 intron Plc21C + chr2L 323547 intron Plc21C + chr2L_9_320001 chr2L_320001 RAL-897 8 chr2L 325117 325160 chr2L 325193 325201 13 72 14.0 14.5 14.2 0.9 84 chr2L 325117 intron Plc21C + chr2L 325159 intron Plc21C + chr2L 325201 intron Plc21C + chr2L_13_325001 chr2L_325001 RAL-897 9 chr2L 347892 347918 chr2L 355386 355418 blood 7 7499 2.0 2.0 2.0 2.3 7526 chr2L 347892 3` UTR Plc21C + chr2L 351655 intron Plc21C + chr2L 355418 3` UTR Plc21C + chr2L_7_350001 chr2L_350001 RAL-897 10 chr2L 371447 371459 chr2L 371526 371538 5 78 1.5 7.0 4.2 1.0 91 chr2L 371447 intergenic not near genes chr2L 371492 intergenic not near genes chr2L 371538 intergenic not near genes chr2L_5_370001 chr2L_370001 RAL-897 11 chr2L 388577 388604 chr2L 388745 388772 4 168 1.5 3.0 2.2 1.2 195 chr2L 388577 intergenic not near genes chr2L 388674 intergenic not near genes chr2L 388772 intergenic not near genes chr2L_4_385001 chr2L_385001 RAL-897 12 chr2L 590620 590653 chr2L 590721 590751 8 97 5.0 6.5 5.8 1.2 131 chr2L 590620 intron Gsc - chr2L 590686 intron Gsc - chr2L 590751 intron Gsc - chr2L_8_590001 chr2L_590001 RAL-897 13 chr2L 600951 600961 chr2L 601158 601188 8 217 6.5 4.0 5.2 1.3 237 chr2L 600951 intergenic not near genes chr2L 601070 intergenic not near genes chr2L 601188 intergenic not near genes chr2L_8_600001 chr2L_600001 RAL-897 14 chr2L 616590 616624 chr2L 617005 617039 12 415 2.5 2.5 2.5 3.4 449 chr2L 616590 intergenic not near genes chr2L 616814 intergenic not near genes chr2L 617039 intergenic not near genes chr2L_12_615001 chr2L_615001 RAL-897 15 chr2L 630313 630335 chr2L 630399 630423 10 89 3.5 2.5 3.0 2.5 110 chr2L 630313 intergenic not near genes chr2L 630368 intergenic not near genes chr2L 630423 intergenic not near genes chr2L_10_630001 chr2L_630001 RAL-897 16 chr2L 686920 686952 chr2L 695957 695992 roo 15 9038 1.5 6.0 3.8 3.1 9072 chr2L 686920 intron ds - chr2L 691456 intron ds - chr2L 695992 intron ds - chr2L_15_690001 chr2L_690001 RAL-897 17 chr2L 764562 764590 chr2L 764643 764671 12 80 3.0 5.5 4.2 2.3 109 chr2L 764562 intergenic not near genes chr2L 764616 intergenic not near genes chr2L 764671 intergenic not near genes chr2L_12_760001 chr2L_760001 RAL-897 18 chr2L 770465 770494 chr2L 772245 772254 Bari1 17 1772 4.5 5.0 4.8 2.9 1789 chr2L 770465 intergenic not near genes chr2L 771360 intergenic not near genes chr2L 772254 intergenic CR44614 + chr2L_17_770001 chr2L_770001 RAL-897 19 chr2L 775779 775800 chr2L 775841 775876 9 70 4.0 3.5 3.8 1.9 97 chr2L 775779 intergenic not near genes chr2L 775828 intergenic not near genes chr2L 775876 intergenic not near genes chr2L_9_775001 chr2L_775001 RAL-897 20 chr2L 955987 955994 chr2L 956076 956090 5 94 0.0 6.0 3.0 1.2 103 chr2L 955987 intron CG4341 + chr2L 956038 intron CG4341 + chr2L 956090 intron CG4341 + chr2L_5_955001 chr2L_955001 RAL-897 21 chr2L 976884 976908 chr2L 984520 984544 roo 6 7636 3.0 2.0 2.5 1.7 7660 chr2L 976884 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984544 intergenic not near genes chr2L_6_980001 chr2L_980001 RAL-897 22 chr2L 1005906 1005930 chr2L 1005990 1006001 10 83 2.0 6.5 4.2 1.9 95 chr2L 1005906 intergenic not near genes chr2L 1005954 intergenic not near genes chr2L 1006001 intergenic not near genes chr2L_10_1005001 chr2L_1005001 RAL-897 23 chr2L 1048594 1048622 chr2L 1048670 1048698 13 76 1.0 4.0 2.5 3.7 104 chr2L 1048594 intergenic not near genes chr2L 1048646 intergenic not near genes chr2L 1048698 intergenic not near genes chr2L_13_1045001 chr2L_1045001 RAL-897 24 chr2L 1220129 1220161 chr2L 1227595 1227627 blood 23 7465 3.0 2.5 2.8 6.1 7498 chr2L 1220129 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_23_1220001 chr2L_1220001 RAL-897 25 chr2L 1232336 1232371 chr2L 1232475 1232486 14 136 6.5 3.5 5.0 2.3 150 chr2L 1232336 intergenic not near genes chr2L 1232411 intergenic not near genes chr2L 1232486 intergenic not near genes chr2L_14_1230001 chr2L_1230001 RAL-897 26 chr2L 1261137 1261260 chr2L 1261219 1261340 10 81 0.5 0.0 0.2 8.3 203 chr2L 1261137 intron robo3 + chr2L 1261238 intron robo3 + chr2L 1261340 intron robo3 + chr2L_10_1260001 chr2L_1260001 RAL-897 27 chr2L 1271004 1271040 chr2L 1271109 1271145 14 104 3.5 7.0 5.2 2.3 141 chr2L 1271004 intron robo3 + chr2L 1271074 intron robo3 + chr2L 1271145 intron robo3 + chr2L_14_1270001 chr2L_1270001 RAL-897 28 chr2L 1324616 1324645 chr2L 1324701 1324730 10 84 3.0 3.5 3.2 2.4 114 chr2L 1324616 intergenic not near genes chr2L 1324673 intergenic not near genes chr2L 1324730 intergenic not near genes chr2L_10_1320001 chr2L_1320001 RAL-897 29 chr2L 1336939 1336956 chr2L 1337182 1337186 4 238 2.5 7.0 4.8 0.7 247 chr2L 1336939 intergenic not near genes chr2L 1337062 intergenic not near genes chr2L 1337186 intergenic not near genes chr2L_4_1335001 chr2L_1335001 RAL-897 30 chr2L 1343537 1343561 chr2L 1343729 1343754 5 192 1.5 3.0 2.2 1.6 217 chr2L 1343537 exon CG33922 - chr2L 1343646 intron CG33922 - chr2L 1343754 exon CG33922 - chr2L_5_1340001 chr2L_1340001 RAL-897 31 chr2L 1443268 1443287 chr2L 1443344 1443363 6 76 7.0 3.5 5.2 1.0 95 chr2L 1443268 exon CG43402 + chr2L 1443316 3` UTR CG43402 + chr2L 1443363 3` UTR CG43402 + chr2L_6_1440001 chr2L_1440001 RAL-897 32 chr2L 1557154 1557174 chr2L 1557279 1557298 6 125 2.0 4.0 3.0 1.5 144 chr2L 1557154 intron haf + chr2L 1557226 intron haf + chr2L 1557298 intron haf + chr2L_6_1555001 chr2L_1555001 RAL-897 33 chr2L 1570688 1570718 chr2L 1573560 1573590 F-element 10 2872 5.5 4.5 5.0 1.7 2902 chr2L 1570688 intron haf + chr2L 1572139 intron haf + chr2L 1573590 intron haf + chr2L_10_1570001 chr2L_1570001 RAL-897 34 chr2L 1591864 1591895 chr2L 1591948 1591979 6 84 2.5 3.5 3.0 1.5 115 chr2L 1591864 intron haf + chr2L 1591922 intron haf + chr2L 1591979 intron haf + chr2L_6_1590001 chr2L_1590001 RAL-897 35 chr2L 1678976 1679009 chr2L 1686441 1686471 blood 12 7463 1.0 8.5 4.8 2.1 7495 chr2L 1678976 intron chinmo + chr2L 1682724 intron chinmo + chr2L 1686471 intron chinmo + chr2L_12_1680001 chr2L_1680001 RAL-897 36 chr2L 1699258 1699271 chr2L 1699340 1699353 11 81 2.5 4.0 3.2 2.6 95 chr2L 1699258 3` UTR chinmo + chr2L 1699306 3` UTR chinmo + chr2L 1699353 3` UTR chinmo + chr2L_11_1695001 chr2L_1695001 RAL-897 37 chr2L 1699272 1699287 chr2L 1699339 1699370 6 78 2.5 3.5 3.0 1.5 98 chr2L 1699272 3` UTR chinmo + chr2L 1699321 3` UTR chinmo + chr2L 1699370 3` UTR chinmo + chr2L_6_1695001 chr2L_1695001 RAL-897 38 chr2L 1711355 1711388 chr2L 1711678 1711699 mdg3 19 323 7.5 12.0 9.8 1.8 344 chr2L 1711355 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711527 3` UTR frtz - chr2L 1711699 3` UTR frtz - chr2L_19_1710001 chr2L_1710001 RAL-897 39 chr2L 1825250 1825277 chr2L 1825408 1825440 11 161 6.0 9.5 7.8 1.2 190 chr2L 1825250 exon CG31664 - chr2L 1825345 exon CG31664 - chr2L 1825440 exon CG31664 - chr2L_11_1825001 chr2L_1825001 RAL-897 40 chr2L 1948623 1948658 chr2L 1948730 1948765 5 107 0.0 2.0 1.0 2.5 142 chr2L 1948623 intergenic not near genes chr2L 1948694 intergenic not near genes chr2L 1948765 intergenic not near genes chr2L_5_1945001 chr2L_1945001 RAL-897 41 chr2L 2100376 2100405 chr2L 2109524 2109547 roo 12 9149 8.5 5.5 7.0 1.5 9171 chr2L 2100376 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109547 intron dpr3 - chr2L_12_2100001 chr2L_2100001 RAL-897 42 chr2L 2112121 2112145 chr2L 2119776 2119790 opus 11 7656 4.0 5.5 4.8 1.9 7669 chr2L 2112121 intergenic not near genes chr2L 2115956 intergenic not near genes chr2L 2119790 intergenic not near genes chr2L_11_2115001 chr2L_2115001 RAL-897 43 chr2L 2125510 2125546 chr2L 2125852 2125889 15 343 7.0 43.5 25.2 0.6 379 chr2L 2125510 intergenic not near genes chr2L 2125700 intergenic not near genes chr2L 2125889 intergenic not near genes chr2L_15_2125001 chr2L_2125001 RAL-897 44 chr2L 2145746 2145769 chr2L 2145832 2145855 8 86 3.5 5.0 4.2 1.5 109 chr2L 2145746 3` UTR CG11723 - chr2L 2145800 3` UTR CG11723 - chr2L 2145855 3` UTR CG11723 - chr2L_8_2145001 chr2L_2145001 RAL-897 45 chr2L 2174091 2174113 chr2L 2174214 2174238 10 125 2.5 6.0 4.2 1.9 147 chr2L 2174091 intron aop - chr2L 2174164 intron aop - chr2L 2174238 intron aop - chr2L_10_2170001 chr2L_2170001 RAL-897 46 chr2L 2260806 2260836 chr2L 2260891 2260922 10 86 5.0 6.5 5.8 1.5 116 chr2L 2260806 intergenic not near genes chr2L 2260864 intergenic not near genes chr2L 2260922 intergenic not near genes chr2L_10_2260001 chr2L_2260001 RAL-897 47 chr2L 2311070 2311089 chr2L 2311166 2311184 11 96 3.5 0.0 1.8 3.9 114 chr2L 2311070 intron CG9967 - chr2L 2311127 intron CG9967 - chr2L 2311184 intron CG9967 - chr2L_11_2310001 chr2L_2310001 RAL-897 48 chr2L 2317595 2317619 chr2L 2317672 2317694 6 72 26.0 20.0 23.0 0.2 99 chr2L 2317595 intron,intron CG9967 -,eys + chr2L 2317644 intron,intron CG9967 -,eys + chr2L 2317694 intron,intron CG9967 -,eys + chr2L_6_2315001 chr2L_2315001 RAL-897 49 chr2L 2348116 2348124 chr2L 2348196 2348205 6 80 4.0 5.5 4.8 1.0 89 chr2L 2348116 intron,intron CG9967 -,eys + chr2L 2348160 intron,intron CG9967 -,eys + chr2L 2348205 intron,intron CG9967 -,eys + chr2L_6_2345001 chr2L_2345001 RAL-897 50 chr2L 2637837 2637864 chr2L 2638233 2638261 11 395 3.5 6.0 4.8 1.9 424 chr2L 2637837 intergenic not near genes chr2L 2638049 intergenic not near genes chr2L 2638261 intergenic not near genes chr2L_11_2635001 chr2L_2635001 RAL-897 51 chr2L 2661195 2661234 chr2L 2663032 2663072 I-element 9 1832 1.5 2.5 2.0 3.0 1877 chr2L 2661195 intergenic not near genes chr2L 2662134 intergenic not near genes chr2L 2663072 intergenic not near genes chr2L_9_2660001 chr2L_2660001 RAL-897 52 chr2L 2667627 2667654 chr2L 2667703 2667733 13 75 6.0 5.5 5.8 1.9 106 chr2L 2667627 intergenic not near genes chr2L 2667680 intergenic not near genes chr2L 2667733 intergenic not near genes chr2L_13_2665001 chr2L_2665001 RAL-897 53 chr2L 2683889 2683906 chr2L 2683953 2683981 5 72 0.0 3.5 1.8 1.8 92 chr2L 2683889 5` UTR CG31690 + chr2L 2683935 5` UTR CG31690 + chr2L 2683981 5` UTR CG31690 + chr2L_5_2680001 chr2L_2680001 RAL-897 54 chr2L 2687321 2687352 chr2L 2687401 2687431 15 77 2.0 3.0 2.5 4.3 110 chr2L 2687321 intron CG31690 + chr2L 2687376 intron CG31690 + chr2L 2687431 intron CG31690 + chr2L_15_2685001 chr2L_2685001 RAL-897 55 chr2L 2698867 2698894 chr2L 2698954 2698973 17 86 5.5 2.5 4.0 3.4 106 chr2L 2698867 intron CG31690 + chr2L 2698920 intron CG31690 + chr2L 2698973 intron CG31690 + chr2L_17_2695001 chr2L_2695001 RAL-897 56 chr2L 2804244 2804273 chr2L 2804333 2804348 13 86 6.0 5.5 5.8 1.9 104 chr2L 2804244 intergenic not near genes chr2L 2804296 intergenic not near genes chr2L 2804348 intergenic not near genes chr2L_13_2800001 chr2L_2800001 RAL-897 57 chr2L 2857830 2857834 chr2L 2857903 2857910 4 75 1.5 4.5 3.0 1.0 80 chr2L 2857830 intron CG2991 + chr2L 2857870 intron CG2991 + chr2L 2857910 intron CG2991 + chr2L_4_2855001 chr2L_2855001 RAL-897 58 chr2L 2937426 2937441 chr2L 2937503 2937517 5 77 4.5 6.0 5.2 0.8 91 chr2L 2937426 intron lilli + chr2L 2937472 intron lilli + chr2L 2937517 intron lilli + chr2L_5_2935001 chr2L_2935001 RAL-897 59 chr2L 3073029 3073061 chr2L 3078232 3078263 copia 14 5203 5.0 5.0 5.0 2.3 5234 chr2L 3073029 intron toc - chr2L 3075646 intron toc - chr2L 3078263 intron toc - chr2L_14_3075001 chr2L_3075001 RAL-897 60 chr2L 3202737 3202769 chr2L 3210165 3210198 mdg1 8 7428 2.0 1.0 1.5 3.2 7461 chr2L 3202737 intergenic not near genes chr2L 3206468 intergenic not near genes chr2L 3210198 intergenic CR45336 + chr2L_8_3205001 chr2L_3205001 RAL-897 61 chr2L 3244094 3244115 chr2L 3244181 3244188 5 81 6.0 2.0 4.0 1.0 94 chr2L 3244094 intergenic not near genes chr2L 3244141 intergenic not near genes chr2L 3244188 intergenic not near genes chr2L_5_3240001 chr2L_3240001 RAL-897 62 chr2L 3251497 3251527 chr2L 3259062 3259092 springer 5 7564 3.5 5.5 4.5 0.9 7595 chr2L 3251497 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259092 intergenic not near genes chr2L_5_3255001 chr2L_3255001 RAL-897 63 chr2L 3289071 3289093 chr2L 3289358 3289380 6 287 4.0 0.0 2.0 2.0 309 chr2L 3289071 intergenic CR44485 + chr2L 3289226 intergenic not near genes chr2L 3289380 intergenic not near genes chr2L_6_3285001 chr2L_3285001 RAL-897 64 chr2L 3291236 3291266 chr2L 3291316 3291346 9 80 4.0 1.5 2.8 2.4 110 chr2L 3291236 intergenic CG9664 - chr2L 3291291 3` UTR CG9664 - chr2L 3291346 3` UTR CG9664 - chr2L_9_3290001 chr2L_3290001 RAL-897 65 chr2L 3351653 3351659 chr2L 3351942 3351951 6 290 5.0 8.0 6.5 0.8 298 chr2L 3351653 intron E23 - chr2L 3351802 intron E23 - chr2L 3351951 intron E23 - chr2L_6_3350001 chr2L_3350001 RAL-897 66 chr2L 3367013 3367037 chr2L 3367163 3367187 10 149 4.0 4.0 4.0 2.0 174 chr2L 3367013 intron CG34394 - chr2L 3367100 intron CG34394 - chr2L 3367187 intron CG34394 - chr2L_10_3365001 chr2L_3365001 RAL-897 67 chr2L 3388605 3388630 chr2L 3388846 3388871 pogo 4 241 2.5 3.5 3.0 1.0 266 chr2L 3388605 intergenic CG42460 - chr2L 3388738 intergenic CG42460 - chr2L 3388871 intergenic CG42460 -,CR44791 + chr2L_4_3385001 chr2L_3385001 RAL-897 68 chr2L 3401876 3401896 chr2L 3401968 3401988 8 92 3.5 2.5 3.0 2.0 112 chr2L 3401876 intergenic not near genes chr2L 3401932 intergenic not near genes chr2L 3401988 intergenic not near genes chr2L_8_3400001 chr2L_3400001 RAL-897 69 chr2L 3482155 3482167 chr2L 3482239 3482257 6 89 2.0 1.5 1.8 2.1 102 chr2L 3482155 intron CG15414 - chr2L 3482206 intron CG15414 - chr2L 3482257 intron CG15414 - chr2L_6_3480001 chr2L_3480001 RAL-897 70 chr2L 3508352 3508373 chr2L 3508430 3508451 4 78 0.0 6.0 3.0 1.0 99 chr2L 3508352 intergenic tim -,CR45299 + chr2L 3508402 intergenic CR45299 +,tim - chr2L 3508451 intergenic CR45299 +,tim - chr2L_4_3505001 chr2L_3505001 RAL-897 71 chr2L 3523036 3523055 chr2L 3523148 3523167 9 112 2.0 7.5 4.8 1.6 131 chr2L 3523036 exon Sr-CIV - chr2L 3523102 intron Sr-CIV - chr2L 3523167 exon Sr-CIV - chr2L_9_3520001 chr2L_3520001 RAL-897 72 chr2L 3582880 3582906 chr2L 3582957 3582982 10 76 3.0 5.5 4.2 1.9 102 chr2L 3582880 intergenic not near genes chr2L 3582931 intergenic not near genes chr2L 3582982 intergenic not near genes chr2L_10_3580001 chr2L_3580001 RAL-897 73 chr2L 3616584 3616594 chr2L 3616661 3616670 6 77 0.5 7.0 3.8 1.2 86 chr2L 3616584 5` UTR CR44310 + chr2L 3616627 5` UTR CR44310 + chr2L 3616670 5` UTR CR44310 + chr2L_6_3615001 chr2L_3615001 RAL-897 74 chr2L 3632354 3632386 chr2L 3632477 3632489 19 122 3.5 5.0 4.2 3.7 135 chr2L 3632354 intron for - chr2L 3632422 intron for - chr2L 3632489 intron for - chr2L_19_3630001 chr2L_3630001 RAL-897 75 chr2L 3649790 3649807 chr2L 3654992 3655009 copia 5 5201 4.0 3.5 3.8 1.0 5219 chr2L 3649790 intron for - chr2L 3652400 intron for - chr2L 3655009 intron for - chr2L_5_3650001 chr2L_3650001 RAL-897 76 chr2L 3686028 3686056 chr2L 3686116 3686123 8 83 0.5 2.0 1.2 3.6 95 chr2L 3686028 intron CG34340 + chr2L 3686076 intron CG34340 + chr2L 3686123 intron CG34340 + chr2L_8_3685001 chr2L_3685001 RAL-897 77 chr2L 3819625 3819630 chr2L 3819701 3819706 4 76 3.0 5.0 4.0 0.8 81 chr2L 3819625 intergenic not near genes chr2L 3819666 intergenic not near genes chr2L 3819706 intergenic not near genes chr2L_4_3815001 chr2L_3815001 RAL-897 78 chr2L 3831851 3831863 chr2L 3831932 3831942 4 80 1.0 4.0 2.5 1.1 91 chr2L 3831851 intergenic not near genes chr2L 3831896 intergenic not near genes chr2L 3831942 intergenic not near genes chr2L_4_3830001 chr2L_3830001 RAL-897 79 chr2L 3844347 3844353 chr2L 3844459 3844465 6 112 6.0 2.5 4.2 1.2 118 chr2L 3844347 intergenic not near genes chr2L 3844406 intergenic not near genes chr2L 3844465 intergenic not near genes chr2L_6_3840001 chr2L_3840001 RAL-897 80 chr2L 3891894 3891927 chr2L 3891979 3892011 11 84 2.5 3.5 3.0 2.8 117 chr2L 3891894 intron capu - chr2L 3891952 intron capu - chr2L 3892011 intron capu - chr2L_11_3890001 chr2L_3890001 RAL-897 81 chr2L 3936625 3936656 chr2L 3936702 3936735 4 76 0.5 0.0 0.2 3.3 110 chr2L 3936625 intron fred - chr2L 3936680 intron fred - chr2L 3936735 intron fred - chr2L_4_3935001 chr2L_3935001 RAL-897 82 chr2L 3943803 3943811 chr2L 3943893 3943902 4 91 2.0 4.0 3.0 1.0 99 chr2L 3943803 intron fred - chr2L 3943852 intron fred - chr2L 3943902 intron fred - chr2L_4_3940001 chr2L_3940001 RAL-897 83 chr2L 4037801 4037809 chr2L 4037888 4037896 5 87 3.5 4.0 3.8 1.0 95 chr2L 4037801 intron ed + chr2L 4037848 intron ed + chr2L 4037896 intron ed + chr2L_5_4035001 chr2L_4035001 RAL-897 84 chr2L 4057050 4057059 chr2L 4057195 4057203 5 153 0.5 4.0 2.2 1.6 153 chr2L 4057050 intron ed + chr2L 4057126 intron ed + chr2L 4057203 intron ed + chr2L_5_4055001 chr2L_4055001 RAL-897 85 chr2L 4066040 4066064 chr2L 4068865 4068887 Juan 10 2824 5.0 6.5 5.8 1.5 2847 chr2L 4066040 intron ed + chr2L 4067464 intron ed + chr2L 4068887 intron ed + chr2L_10_4065001 chr2L_4065001 RAL-897 86 chr2L 4104685 4104699 chr2L 4104762 4104775 5 76 6.5 5.5 6.0 0.7 90 chr2L 4104685 intron ed + chr2L 4104730 intron ed + chr2L 4104775 intron ed + chr2L_5_4100001 chr2L_4100001 RAL-897 87 chr2L 4150638 4150658 chr2L 4150702 4150724 10 68 2.0 4.5 3.2 2.4 86 chr2L 4150638 exon CG2955 + chr2L 4150681 exon CG2955 + chr2L 4150724 exon CG2955 + chr2L_10_4150001 chr2L_4150001 RAL-897 88 chr2L 4160501 4160536 chr2L 4160912 4160947 15 409 6.5 6.5 6.5 2.0 446 chr2L 4160501 intergenic not near genes chr2L 4160724 intergenic not near genes chr2L 4160947 intergenic not near genes chr2L_15_4160001 chr2L_4160001 RAL-897 89 chr2L 4181295 4181300 chr2L 4183927 4183931 Burdock 4 2632 2.5 12.0 7.2 0.5 2636 chr2L 4181295 intergenic not near genes chr2L 4182613 intergenic not near genes chr2L 4183931 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-897 90 chr2L 4245953 4245985 chr2L 4246127 4246158 11 173 6.0 5.5 5.8 1.6 205 chr2L 4245953 intergenic CR44059 - chr2L 4246056 intergenic CR44059 - chr2L 4246158 intergenic CR44059 - chr2L_11_4245001 chr2L_4245001 RAL-897 91 chr2L 4285710 4285733 chr2L 4285789 4285812 13 79 8.0 4.5 6.2 1.8 102 chr2L 4285710 intron tutl + chr2L 4285761 intron tutl + chr2L 4285812 intron tutl + chr2L_13_4285001 chr2L_4285001 RAL-897 92 chr2L 4285735 4285738 chr2L 4285788 4285818 4 73 6.0 4.0 5.0 0.7 83 chr2L 4285735 intron tutl + chr2L 4285776 intron tutl + chr2L 4285818 intron tutl + chr2L_4_4285001 chr2L_4285001 RAL-897 93 chr2L 4294004 4294012 chr2L 4294096 4294104 5 90 5.0 3.0 4.0 1.0 100 chr2L 4294004 intron tutl + chr2L 4294054 intron tutl + chr2L 4294104 intron tutl + chr2L_5_4290001 chr2L_4290001 RAL-897 94 chr2L 4309789 4309816 chr2L 4309874 4309901 12 83 8.0 6.5 7.2 1.5 112 chr2L 4309789 intron tutl + chr2L 4309845 intron tutl + chr2L 4309901 intron tutl + chr2L_12_4305001 chr2L_4305001 RAL-897 95 chr2L 4373710 4373737 chr2L 4373809 4373823 5 93 5.5 3.5 4.5 0.9 113 chr2L 4373710 intron Traf4 + chr2L 4373766 intron Traf4 + chr2L 4373823 intron Traf4 + chr2L_5_4370001 chr2L_4370001 RAL-897 96 chr2L 4472473 4472490 chr2L 4472672 4472689 4 200 21.0 11.0 16.0 0.2 216 chr2L 4472473 intron ine - chr2L 4472581 intron ine - chr2L 4472689 intron ine - chr2L_4_4470001 chr2L_4470001 RAL-897 97 chr2L 4475966 4475991 chr2L 4476081 4476113 11 121 8.5 5.0 6.8 1.4 147 chr2L 4475966 intron ine - chr2L 4476040 intron ine - chr2L 4476113 intron ine - chr2L_11_4475001 chr2L_4475001 RAL-897 98 chr2L 4601702 4601736 chr2L 4609143 4609177 mdg1 14 7440 4.0 6.5 5.2 2.3 7475 chr2L 4601702 intron dp - chr2L 4605440 intron dp - chr2L 4609177 intron dp - chr2L_14_4605001 chr2L_4605001 RAL-897 99 chr2L 4661847 4661856 chr2L 4669427 4669436 opus 4 7580 1.5 8.5 5.0 0.7 7589 chr2L 4661847 intergenic not near genes chr2L 4665642 intergenic not near genes chr2L 4669436 intergenic not near genes chr2L_4_4665001 chr2L_4665001 RAL-897 100 chr2L 4677746 4677771 chr2L 4677820 4677853 7 81 3.5 6.0 4.8 1.2 107 chr2L 4677746 intergenic not near genes chr2L 4677800 intergenic not near genes chr2L 4677853 intergenic not near genes chr2L_7_4675001 chr2L_4675001 RAL-897 101 chr2L 4701838 4701865 chr2L 4701978 4702005 11 139 6.5 4.5 5.5 1.7 167 chr2L 4701838 intron CG34351 + chr2L 4701922 intron CG34351 + chr2L 4702005 intron CG34351 + chr2L_11_4700001 chr2L_4700001 RAL-897 102 chr2L 4748696 4748723 chr2L 4748774 4748777 9 75 1.5 7.0 4.2 1.7 81 chr2L 4748696 intron CG15630 - chr2L 4748736 intron CG15630 - chr2L 4748777 intron CG15630 - chr2L_9_4745001 chr2L_4745001 RAL-897 103 chr2L 4819494 4819504 chr2L 4819617 4819626 4 123 7.5 3.5 5.5 0.6 132 chr2L 4819494 intergenic not near genes chr2L 4819560 intergenic not near genes chr2L 4819626 intergenic not near genes chr2L_4_4815001 chr2L_4815001 RAL-897 104 chr2L 4819505 4819519 chr2L 4819616 4819640 9 120 3.5 3.0 3.2 2.1 135 chr2L 4819505 intergenic not near genes chr2L 4819572 intergenic not near genes chr2L 4819640 intergenic not near genes chr2L_9_4815001 chr2L_4815001 RAL-897 105 chr2L 4856228 4856252 chr2L 4856422 4856449 10 198 3.5 3.5 3.5 2.2 221 chr2L 4856228 intron pog + chr2L 4856338 intron pog + chr2L 4856449 intron pog + chr2L_10_4855001 chr2L_4855001 RAL-897 106 chr2L 4858464 4858485 chr2L 4858552 4858572 6 88 1.5 0.5 1.0 3.0 108 chr2L 4858464 intron pog + chr2L 4858518 intron pog + chr2L 4858572 intron pog + chr2L_6_4855001 chr2L_4855001 RAL-897 107 chr2L 4879143 4879180 chr2L 4880375 4880400 20 1225 28.0 31.0 29.5 0.7 1257 chr2L 4879143 exon Cf2 - chr2L 4879772 intron Cf2 - chr2L 4880400 exon Cf2 - chr2L_20_4875001 chr2L_4875001 RAL-897 108 chr2L 4880420 4880446 chr2L 4881214 4881238 9 789 32.0 25.5 28.8 0.3 818 chr2L 4880420 exon Cf2 - chr2L 4880829 intron Cf2 - chr2L 4881238 exon Cf2 - chr2L_9_4880001 chr2L_4880001 RAL-897 109 chr2L 4901138 4901156 chr2L 4901238 4901258 7 101 2.0 8.5 5.2 1.1 120 chr2L 4901138 intron CG3036 + chr2L 4901198 intron CG3036 + chr2L 4901258 intron CG3036 + chr2L_7_4900001 chr2L_4900001 RAL-897 110 chr2L 4923237 4923252 chr2L 4923327 4923343 5 91 0.5 0.5 0.5 3.3 106 chr2L 4923237 intron hoe1 - chr2L 4923290 intron hoe1 - chr2L 4923343 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-897 111 chr2L 4936841 4936862 chr2L 4936926 4936948 8 86 3.5 4.0 3.8 1.7 107 chr2L 4936841 intergenic hoe2 - chr2L 4936894 intergenic hoe2 - chr2L 4936948 intergenic Sgs1 +,hoe2 - chr2L_8_4935001 chr2L_4935001 RAL-897 112 chr2L 5021722 5021735 chr2L 5021798 5021798 13 74 6.0 5.0 5.5 2.0 76 chr2L 5021722 intron vkg - chr2L 5021760 intron vkg - chr2L 5021798 intron vkg - chr2L_13_5020001 chr2L_5020001 RAL-897 113 chr2L 5030409 5030428 chr2L 5030494 5030513 4 84 1.0 0.0 0.5 2.7 104 chr2L 5030409 intron Cg25C + chr2L 5030461 intron Cg25C + chr2L 5030513 intron Cg25C + chr2L_4_5030001 chr2L_5030001 RAL-897 114 chr2L 5083748 5083773 chr2L 5083821 5083848 10 76 4.0 2.0 3.0 2.5 100 chr2L 5083748 intron pgant5 - chr2L 5083798 intron pgant5 - chr2L 5083848 intron pgant5 - chr2L_10_5080001 chr2L_5080001 RAL-897 115 chr2L 5120976 5121006 chr2L 5121070 5121100 9 94 5.0 6.0 5.5 1.4 124 chr2L 5120976 intron Msp300 + chr2L 5121038 intron Msp300 + chr2L 5121100 intron Msp300 + chr2L_9_5120001 chr2L_5120001 RAL-897 116 chr2L 5206581 5206608 chr2L 5209807 5209835 7 3226 18.0 42.5 30.2 0.2 3254 chr2L 5206581 3` UTR Msp300 + chr2L 5208208 exon Cyp28d2 + chr2L 5209835 intergenic Cyp28d2 + chr2L_7_5205001 chr2L_5205001 RAL-897 117 chr2L 5200541 5200548 chr2L 5215806 5215813 5 15265 40.5 35.5 38.0 0.1 15272 chr2L 5200541 exon Msp300 + chr2L 5208177 exon Cyp28d2 + chr2L 5215813 exon CG14034 - chr2L_5_5205001 chr2L_5205001 RAL-897 118 chr2L 5340934 5340966 chr2L 5341305 5341337 15 369 4.0 0.0 2.0 5.0 403 chr2L 5340934 exon CG12512 - chr2L 5341136 intron CG12512 - chr2L 5341337 intron CG12512 - chr2L_15_5340001 chr2L_5340001 RAL-897 119 chr2L 5342775 5342794 chr2L 5345155 5345165 Doc 4 2375 3.0 3.5 3.2 1.0 2390 chr2L 5342775 intergenic not near genes chr2L 5343970 intergenic not near genes chr2L 5345165 intergenic not near genes chr2L_4_5340001 chr2L_5340001 RAL-897 120 chr2L 5378431 5378452 chr2L 5378510 5378531 6 79 1.0 2.0 1.5 2.4 100 chr2L 5378431 intergenic not near genes chr2L 5378481 intergenic not near genes chr2L 5378531 intergenic not near genes chr2L_6_5375001 chr2L_5375001 RAL-897 121 chr2L 5433845 5433878 chr2L 5433925 5433958 11 79 3.5 3.0 3.2 2.6 113 chr2L 5433845 3` UTR CR43715 - chr2L 5433902 3` UTR CR43715 - chr2L 5433958 3` UTR CR43715 - chr2L_11_5430001 chr2L_5430001 RAL-897 122 chr2L 5449726 5449741 chr2L 5449812 5449814 5 86 0.0 0.0 0.0 5.0 88 chr2L 5449726 intergenic not near genes chr2L 5449770 intergenic not near genes chr2L 5449814 intergenic not near genes chr2L_5_5445001 chr2L_5445001 RAL-897 123 chr2L 5672171 5672202 chr2L 5672252 5672283 8 81 2.5 2.5 2.5 2.3 112 chr2L 5672171 intergenic not near genes chr2L 5672227 intergenic not near genes chr2L 5672283 intergenic not near genes chr2L_8_5670001 chr2L_5670001 RAL-897 124 chr2L 5695864 5695891 chr2L 5695955 5695959 4 86 1.5 4.0 2.8 1.1 95 chr2L 5695864 intergenic not near genes chr2L 5695912 intergenic not near genes chr2L 5695959 intergenic not near genes chr2L_4_5695001 chr2L_5695001 RAL-897 125 chr2L 5749897 5749928 chr2L 5749975 5749981 9 72 5.5 7.0 6.2 1.2 84 chr2L 5749897 intron CG11030 + chr2L 5749939 intron CG11030 + chr2L 5749981 intron CG11030 + chr2L_9_5745001 chr2L_5745001 RAL-897 126 chr2L 5796897 5796927 chr2L 5796973 5797003 9 75 3.5 3.0 3.2 2.1 106 chr2L 5796897 intron CG9171 - chr2L 5796950 intron CG9171 - chr2L 5797003 intron CG9171 - chr2L_9_5795001 chr2L_5795001 RAL-897 127 chr2L 5808042 5808062 chr2L 5808304 5808313 8 256 5.0 6.5 5.8 1.2 271 chr2L 5808042 exon CG11034 + chr2L 5808178 exon CG11034 + chr2L 5808313 exon CG11034 + chr2L_8_5805001 chr2L_5805001 RAL-897 128 chr2L 5827710 5827740 chr2L 5836718 5836748 roo 15 9005 5.5 7.0 6.2 2.1 9038 chr2L 5827710 intron TrissinR + chr2L 5832229 intron TrissinR + chr2L 5836748 intron TrissinR + chr2L_15_5830001 chr2L_5830001 RAL-897 129 chr2L 5887601 5887633 chr2L 5887682 5887683 8 75 1.0 4.5 2.8 2.1 82 chr2L 5887601 3` UTR CR44577 - chr2L 5887642 3` UTR CR44577 - chr2L 5887683 3` UTR CR44577 - chr2L_8_5885001 chr2L_5885001 RAL-897 130 chr2L 5897592 5897628 chr2L 5897675 5897711 27 79 5.5 6.5 6.0 3.9 119 chr2L 5897592 intergenic not near genes chr2L 5897652 intergenic not near genes chr2L 5897711 intergenic not near genes chr2L_27_5895001 chr2L_5895001 RAL-897 131 chr2L 5962293 5962301 chr2L 5962369 5962376 4 76 2.0 4.0 3.0 1.0 83 chr2L 5962293 intergenic not near genes chr2L 5962334 intergenic not near genes chr2L 5962376 intergenic not near genes chr2L_4_5960001 chr2L_5960001 RAL-897 132 chr2L 5981292 5981316 chr2L 5981381 5981405 7 89 1.5 2.0 1.8 2.5 113 chr2L 5981292 intergenic chic -,eIF-4a + chr2L 5981348 intergenic chic -,eIF-4a + chr2L 5981405 intergenic eIF-4a +,chic - chr2L_7_5980001 chr2L_5980001 RAL-897 133 chr2L 6007097 6007126 chr2L 6007171 6007202 6 76 1.5 0.0 0.8 3.3 105 chr2L 6007097 intergenic CG9098 -,Gal - chr2L 6007150 intergenic CG9098 -,Gal - chr2L 6007202 intergenic CG9098 -,Gal - chr2L_6_6005001 chr2L_6005001 RAL-897 134 chr2L 6050442 6050466 chr2L 6050545 6050570 10 103 2.5 3.0 2.8 2.6 128 chr2L 6050442 intergenic CG12393 +,CG9135 + chr2L 6050506 intergenic CG12393 +,CG9135 + chr2L 6050570 intergenic CG12393 +,CG9135 + chr2L_10_6050001 chr2L_6050001 RAL-897 135 chr2L 6077601 6077618 chr2L 6077710 6077727 7 109 1.5 5.5 3.5 1.6 126 chr2L 6077601 intergenic not near genes chr2L 6077664 intergenic not near genes chr2L 6077727 intergenic not near genes chr2L_7_6075001 chr2L_6075001 RAL-897 136 chr2L 6104792 6104811 chr2L 6105338 6105360 12 548 7.0 10.0 8.5 1.3 568 chr2L 6104792 intron stai + chr2L 6105076 intron stai + chr2L 6105360 intron stai + chr2L_12_6105001 chr2L_6105001 RAL-897 137 chr2L 6106286 6106316 chr2L 6106360 6106396 13 78 1.5 4.5 3.0 3.2 110 chr2L 6106286 intron stai + chr2L 6106341 intron stai + chr2L 6106396 intron stai + chr2L_13_6105001 chr2L_6105001 RAL-897 138 chr2L 6242978 6242986 chr2L 6243076 6243076 4 96 5.0 5.0 5.0 0.7 98 chr2L 6242978 intergenic not near genes chr2L 6243027 intergenic not near genes chr2L 6243076 intergenic not near genes chr2L_4_6240001 chr2L_6240001 RAL-897 139 chr2L 6308309 6308343 chr2L 6308392 6308426 13 82 2.5 2.5 2.5 3.7 117 chr2L 6308309 intron Ddr + chr2L 6308368 intron Ddr + chr2L 6308426 intron,3` UTR Ddr +,CG43922 - chr2L_13_6305001 chr2L_6305001 RAL-897 140 chr2L 6315286 6315319 chr2L 6315377 6315411 10 92 2.0 3.0 2.5 2.9 125 chr2L 6315286 intron Ddr + chr2L 6315348 intron Ddr + chr2L 6315411 intron Ddr + chr2L_10_6315001 chr2L_6315001 RAL-897 141 chr2L 6363155 6363182 chr2L 6366070 6366104 Burdock 6 2917 3.0 3.0 3.0 1.5 2949 chr2L 6363155 intergenic not near genes chr2L 6364630 intergenic not near genes chr2L 6366104 intergenic not near genes chr2L_6_6360001 chr2L_6360001 RAL-897 142 chr2L 6380250 6380282 chr2L 6380339 6380373 17 86 4.0 2.0 3.0 4.2 123 chr2L 6380250 intron CG42368 - chr2L 6380312 intron CG42368 - chr2L 6380373 intron CG42368 - chr2L_17_6380001 chr2L_6380001 RAL-897 143 chr2L 6387995 6388015 chr2L 6388074 6388092 5 79 3.5 2.5 3.0 1.2 97 chr2L 6387995 intron CG42368 - chr2L 6388044 intron CG42368 - chr2L 6388092 intron CG42368 - chr2L_5_6385001 chr2L_6385001 RAL-897 144 chr2L 6426861 6426889 chr2L 6445121 6445149 roo 11 18259 4.0 5.5 4.8 1.9 18288 chr2L 6426861 3` UTR CG9527 - chr2L 6436005 intron CG9527 - chr2L 6445149 exon CG9527 - chr2L_11_6435001 chr2L_6435001 RAL-897 145 chr2L 6590095 6590122 chr2L 6590169 6590199 10 74 7.0 6.0 6.5 1.3 104 chr2L 6590095 intron CG11319 - chr2L 6590147 intron CG11319 - chr2L 6590199 intron CG11319 - chr2L_10_6590001 chr2L_6590001 RAL-897 146 chr2L 6640912 6640940 chr2L 6641000 6641035 13 93 6.0 3.0 4.5 2.4 123 chr2L 6640912 exon CG31635 - chr2L 6640974 intron CG31635 - chr2L 6641035 intron CG31635 - chr2L_13_6640001 chr2L_6640001 RAL-897 147 chr2L 6728740 6728759 chr2L 6728819 6728824 12 80 7.0 6.5 6.8 1.5 84 chr2L 6728740 exon Liprin-alpha + chr2L 6728782 intron Liprin-alpha + chr2L 6728824 intron Liprin-alpha + chr2L_12_6725001 chr2L_6725001 RAL-897 148 chr2L 6740747 6740761 chr2L 6740825 6740848 5 85 0.0 5.5 2.8 1.3 101 chr2L 6740747 intergenic not near genes chr2L 6740798 intergenic not near genes chr2L 6740848 intergenic not near genes chr2L_5_6740001 chr2L_6740001 RAL-897 149 chr2L 6771984 6772001 chr2L 6772071 6772088 5 87 12.5 7.5 10.0 0.5 104 chr2L 6771984 intron CG11321 - chr2L 6772036 intron CG11321 - chr2L 6772088 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-897 150 chr2L 6772003 6772016 chr2L 6772070 6772086 4 74 9.5 6.5 8.0 0.4 83 chr2L 6772003 intron CG11321 - chr2L 6772044 intron CG11321 - chr2L 6772086 intron CG11321 - chr2L_4_6770001 chr2L_6770001 RAL-897 151 chr2L 6799535 6799572 chr2L 6799623 6799660 9 86 4.0 1.0 2.5 2.6 125 chr2L 6799535 5` UTR CR43610 + chr2L 6799598 5` UTR CR43610 + chr2L 6799660 intergenic CR43610 +,CG17376 - chr2L_9_6795001 chr2L_6795001 RAL-897 152 chr2L 6836505 6836530 chr2L 6836587 6836612 7 82 3.5 3.5 3.5 1.6 107 chr2L 6836505 intron sens-2 + chr2L 6836558 intron sens-2 + chr2L 6836612 intron sens-2 + chr2L_7_6835001 chr2L_6835001 RAL-897 153 chr2L 6876776 6876810 chr2L 6882964 6883000 diver 13 6185 8.5 3.5 6.0 1.9 6224 chr2L 6876776 intron Nlg2 + chr2L 6879888 intron Nlg2 + chr2L 6883000 intron Nlg2 + chr2L_13_6875001 chr2L_6875001 RAL-897 154 chr2L 6922082 6922090 chr2L 6922197 6922205 5 113 11.5 9.0 10.2 0.4 123 chr2L 6922082 intron Hrb27C + chr2L 6922144 intron Hrb27C + chr2L 6922205 intron Hrb27C + chr2L_5_6920001 chr2L_6920001 RAL-897 155 chr2L 6922095 6922103 chr2L 6922197 6922204 5 107 8.0 9.0 8.5 0.5 109 chr2L 6922095 intron Hrb27C + chr2L 6922150 intron Hrb27C + chr2L 6922204 intron Hrb27C + chr2L_5_6920001 chr2L_6920001 RAL-897 156 chr2L 7042061 7042084 chr2L 7042150 7042173 8 88 2.0 2.0 2.0 2.7 112 chr2L 7042061 intron milt + chr2L 7042117 intron milt + chr2L 7042173 intron milt + chr2L_8_7040001 chr2L_7040001 RAL-897 157 chr2L 7121807 7121833 chr2L 7121910 7121936 10 103 4.5 7.0 5.8 1.5 129 chr2L 7121807 intron Pvf3 - chr2L 7121872 intron Pvf3 - chr2L 7121936 intron Pvf3 - chr2L_10_7120001 chr2L_7120001 RAL-897 158 chr2L 7125794 7125806 chr2L 7125910 7125921 5 116 1.5 1.0 1.2 2.3 127 chr2L 7125794 intron Pvf3 - chr2L 7125858 intron Pvf3 - chr2L 7125921 intron Pvf3 - chr2L_5_7125001 chr2L_7125001 RAL-897 159 chr2L 7179106 7179139 chr2L 7179190 7179198 20 80 5.0 9.0 7.0 2.5 92 chr2L 7179106 intergenic not near genes chr2L 7179152 intergenic not near genes chr2L 7179198 intergenic not near genes chr2L_20_7175001 chr2L_7175001 RAL-897 160 chr2L 7217235 7217266 chr2L 7217340 7217371 17 103 3.0 7.0 5.0 2.8 136 chr2L 7217235 intron CG13784 - chr2L 7217303 intron CG13784 - chr2L 7217371 intron CG13784 - chr2L_17_7215001 chr2L_7215001 RAL-897 161 chr2L 7244727 7244755 chr2L 7244852 7244880 9 124 0.5 5.0 2.8 2.4 153 chr2L 7244727 intron Ndae1 - chr2L 7244804 intron Ndae1 - chr2L 7244880 intron Ndae1 - chr2L_9_7240001 chr2L_7240001 RAL-897 162 chr2L 7343332 7343354 chr2L 7350440 7350470 roo 9 7113 5.5 7.5 6.5 1.2 7138 chr2L 7343332 intron Wnt6 + chr2L 7346901 intron Wnt6 + chr2L 7350470 intron Wnt6 + chr2L_9_7345001 chr2L_7345001 RAL-897 163 chr2L 7437188 7437218 chr2L 7437268 7437298 8 79 1.0 4.0 2.5 2.3 110 chr2L 7437188 intergenic CG5973 + chr2L 7437243 intergenic CG5973 + chr2L 7437298 intergenic CG5973 + chr2L_8_7435001 chr2L_7435001 RAL-897 164 chr2L 7567486 7567515 chr2L 7567563 7567592 10 77 4.5 3.0 3.8 2.1 106 chr2L 7567486 intron RapGAP1 - chr2L 7567539 intron RapGAP1 - chr2L 7567592 intron RapGAP1 - chr2L_10_7565001 chr2L_7565001 RAL-897 165 chr2L 7621098 7621122 chr2L 7621338 7621339 11 236 4.5 6.5 5.5 1.7 241 chr2L 7621098 intergenic not near genes chr2L 7621218 intergenic not near genes chr2L 7621339 intergenic not near genes chr2L_11_7620001 chr2L_7620001 RAL-897 166 chr2L 7636268 7636294 chr2L 7636618 7636644 14 350 5.5 6.5 6.0 2.0 376 chr2L 7636268 5` UTR CR44799 + chr2L 7636456 5` UTR CR44799 + chr2L 7636644 intergenic CR44799 +,CR44800 + chr2L_14_7635001 chr2L_7635001 RAL-897 167 chr2L 7653048 7653073 chr2L 7653137 7653163 8 91 4.0 0.0 2.0 2.7 115 chr2L 7653048 intron Slob - chr2L 7653106 intron Slob - chr2L 7653163 intron Slob - chr2L_8_7650001 chr2L_7650001 RAL-897 168 chr2L 7766630 7766644 chr2L 7766706 7766719 4 76 5.0 1.0 3.0 1.0 89 chr2L 7766630 intergenic not near genes chr2L 7766674 intergenic not near genes chr2L 7766719 intergenic not near genes chr2L_4_7765001 chr2L_7765001 RAL-897 169 chr2L 7867569 7867600 chr2L 7867663 7867693 8 94 3.5 1.5 2.5 2.3 124 chr2L 7867569 intron Proc - chr2L 7867631 intron Proc - chr2L 7867693 intron Proc - chr2L_8_7865001 chr2L_7865001 RAL-897 170 chr2L 7959042 7959062 chr2L 7960453 7960471 pogo 8 1410 5.0 0.5 2.8 2.1 1429 chr2L 7959042 intron Snoo - chr2L 7959756 intron Snoo - chr2L 7960471 intron Snoo - chr2L_8_7955001 chr2L_7955001 RAL-897 171 chr2L 7977090 7977102 chr2L 7984065 7984077 297 6 6974 7.0 8.0 7.5 0.7 6987 chr2L 7977090 intron Snoo - chr2L 7980584 intron Snoo - chr2L 7984077 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 RAL-897 172 chr2L 7977104 7977112 chr2L 7984063 7984087 297 7 6971 5.0 7.5 6.2 1.0 6983 chr2L 7977104 intron Snoo - chr2L 7980596 intron Snoo - chr2L 7984087 intron,5` UTR Snoo -,CG7231 + chr2L_7_7980001 chr2L_7980001 RAL-897 173 chr2L 8013616 8013617 chr2L 8018820 8018821 copia 4 5204 9.0 0.5 4.8 0.7 5205 chr2L 8013616 intron Tg + chr2L 8016218 intron Tg + chr2L 8018821 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-897 174 chr2L 8013619 8013631 chr2L 8018819 8018835 copia 5 5203 8.5 0.5 4.5 0.9 5216 chr2L 8013619 intron Tg + chr2L 8016227 intron Tg + chr2L 8018835 intron Tg + chr2L_5_8015001 chr2L_8015001 RAL-897 175 chr2L 8044095 8044130 chr2L 8044174 8044201 11 78 3.5 4.5 4.0 2.2 106 chr2L 8044095 intron CG7466 + chr2L 8044148 intron CG7466 + chr2L 8044201 intron CG7466 + chr2L_11_8040001 chr2L_8040001 RAL-897 176 chr2L 8164584 8164619 chr2L 8164666 8164684 16 79 0.5 7.0 3.8 3.3 100 chr2L 8164584 intron Piezo + chr2L 8164634 intron Piezo + chr2L 8164684 intron Piezo + chr2L_16_8160001 chr2L_8160001 RAL-897 177 chr2L 8171283 8171298 chr2L 8171363 8171379 5 81 0.0 4.5 2.2 1.6 96 chr2L 8171283 intron Piezo + chr2L 8171331 intron Piezo + chr2L 8171379 intron Piezo + chr2L_5_8170001 chr2L_8170001 RAL-897 178 chr2L 8244733 8244753 chr2L 8244854 8244875 8 122 4.5 4.0 4.2 1.5 142 chr2L 8244733 intron CG8086 - chr2L 8244804 intron CG8086 - chr2L 8244875 intron CG8086 - chr2L_8_8240001 chr2L_8240001 RAL-897 179 chr2L 8271632 8271655 chr2L 8271708 8271730 4 76 0.5 1.5 1.0 2.0 98 chr2L 8271632 intron Btk29A - chr2L 8271681 intron Btk29A - chr2L 8271730 intron Btk29A - chr2L_4_8270001 chr2L_8270001 RAL-897 180 chr2L 8288674 8288704 chr2L 8288770 8288798 14 92 2.5 6.5 4.5 2.5 124 chr2L 8288674 intron Btk29A - chr2L 8288736 intron Btk29A - chr2L 8288798 intron Btk29A - chr2L_14_8285001 chr2L_8285001 RAL-897 181 chr2L 8452427 8452442 chr2L 8461591 8461613 roo 8 9169 4.0 6.0 5.0 1.3 9186 chr2L 8452427 intron fu12 - chr2L 8457020 intron fu12 - chr2L 8461613 intron fu12 - chr2L_8_8455001 chr2L_8455001 RAL-897 182 chr2L 8502662 8502687 chr2L 8502746 8502764 14 81 7.0 4.0 5.5 2.2 102 chr2L 8502662 intron Dh31 - chr2L 8502713 intron Dh31 - chr2L 8502764 intron Dh31 - chr2L_14_8500001 chr2L_8500001 RAL-897 183 chr2L 8594464 8594492 chr2L 8601518 8601546 297 6 7052 5.5 3.0 4.2 1.2 7082 chr2L 8594464 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598005 intron Sema-1a + chr2L 8601546 intron Sema-1a + chr2L_6_8595001 chr2L_8595001 RAL-897 184 chr2L 8612817 8612844 chr2L 8613040 8613067 11 224 3.5 4.0 3.8 2.3 250 chr2L 8612817 intron Sema-1a + chr2L 8612942 intron Sema-1a + chr2L 8613067 intron Sema-1a + chr2L_11_8610001 chr2L_8610001 RAL-897 185 chr2L 8676184 8676216 chr2L 8676381 8676413 19 196 5.0 7.0 6.0 2.7 229 chr2L 8676184 exon Glt + chr2L 8676298 exon Glt + chr2L 8676413 exon Glt + chr2L_19_8675001 chr2L_8675001 RAL-897 186 chr2L 8723113 8723146 chr2L 8731490 8731522 Tirant 19 8376 4.5 4.5 4.5 3.5 8409 chr2L 8723113 intron raw - chr2L 8727318 intron raw - chr2L 8731522 intron raw - chr2L_19_8725001 chr2L_8725001 RAL-897 187 chr2L 8784704 8784726 chr2L 8784815 8784837 7 111 5.0 1.5 3.2 1.7 133 chr2L 8784704 intergenic not near genes chr2L 8784770 intergenic not near genes chr2L 8784837 intergenic not near genes chr2L_7_8780001 chr2L_8780001 RAL-897 188 chr2L 8789308 8789340 chr2L 8789383 8789399 11 74 2.5 4.5 3.5 2.4 91 chr2L 8789308 intergenic not near genes chr2L 8789354 intergenic not near genes chr2L 8789399 intergenic not near genes chr2L_11_8785001 chr2L_8785001 RAL-897 189 chr2L 8799801 8799827 chr2L 8799916 8799940 7 115 3.0 3.5 3.2 1.7 139 chr2L 8799801 intergenic not near genes chr2L 8799870 intergenic not near genes chr2L 8799940 intergenic not near genes chr2L_7_8795001 chr2L_8795001 RAL-897 190 chr2L 8993215 8993245 chr2L 8993316 8993346 17 104 57.0 39.0 48.0 0.3 131 chr2L 8993215 exon CG9555 + chr2L 8993280 exon CG9555 + chr2L 8993346 3` UTR CG9555 + chr2L_17_8990001 chr2L_8990001 RAL-897 191 chr2L 9000277 9000312 chr2L 9007787 9007822 roo 12 7510 3.5 2.0 2.8 3.2 7545 chr2L 9000277 intergenic Try29F + chr2L 9004050 intergenic not near genes chr2L 9007822 intergenic not near genes chr2L_12_9000001 chr2L_9000001 RAL-897 192 chr2L 9023157 9023189 chr2L 9023249 9023286 29 94 4.0 4.5 4.2 5.6 129 chr2L 9023157 intergenic not near genes chr2L 9023222 intergenic not near genes chr2L 9023286 intergenic not near genes chr2L_29_9020001 chr2L_9020001 RAL-897 193 chr2L 9040032 9040059 chr2L 9040119 9040146 7 86 2.5 3.5 3.0 1.8 114 chr2L 9040032 intergenic not near genes chr2L 9040089 intergenic not near genes chr2L 9040146 intergenic not near genes chr2L_7_9040001 chr2L_9040001 RAL-897 194 chr2L 9053410 9053430 chr2L 9053644 9053665 11 235 2.5 2.5 2.5 3.1 255 chr2L 9053410 exon CG31708 - chr2L 9053538 intron CG31708 - chr2L 9053665 intron CG31708 - chr2L_11_9050001 chr2L_9050001 RAL-897 195 chr2L 9084336 9084340 chr2L 16217660 16217660 12 7133322 20.0 39.5 29.8 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-897 196 chr2L 9116617 9116631 chr2L 9116724 9116739 6 108 3.0 5.0 4.0 1.2 122 chr2L 9116617 intergenic not near genes chr2L 9116678 intergenic not near genes chr2L 9116739 intergenic not near genes chr2L_6_9115001 chr2L_9115001 RAL-897 197 chr2L 9152155 9152170 chr2L 9152233 9152248 5 78 2.5 5.5 4.0 1.0 93 chr2L 9152155 intron CG32982 + chr2L 9152202 intron CG32982 + chr2L 9152248 intron CG32982 + chr2L_5_9150001 chr2L_9150001 RAL-897 198 chr2L 9195871 9195881 chr2L 9195954 9195964 4 83 2.0 1.5 1.8 1.4 93 chr2L 9195871 intron tai + chr2L 9195918 intron tai + chr2L 9195964 intron tai + chr2L_4_9195001 chr2L_9195001 RAL-897 199 chr2L 9216333 9216366 chr2L 9216418 9216448 10 82 1.0 1.5 1.2 4.5 115 chr2L 9216333 intron tai + chr2L 9216390 intron tai + chr2L 9216448 intron tai + chr2L_10_9215001 chr2L_9215001 RAL-897 200 chr2L 9227245 9227249 chr2L 9227310 9227328 4 78 1.5 1.0 1.2 1.8 83 chr2L 9227245 intron tai + chr2L 9227286 intron tai + chr2L 9227328 intron tai + chr2L_4_9225001 chr2L_9225001 RAL-897 201 chr2L 9264353 9264381 chr2L 9264448 9264480 8 99 4.0 2.0 3.0 2.0 127 chr2L 9264353 intron Ggamma30A + chr2L 9264416 intron Ggamma30A + chr2L 9264480 intron Ggamma30A + chr2L_8_9260001 chr2L_9260001 RAL-897 202 chr2L 9280007 9280024 chr2L 9280087 9280118 5 91 1.0 2.5 1.8 1.8 111 chr2L 9280007 intron Ggamma30A + chr2L 9280062 intron Ggamma30A + chr2L 9280118 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 RAL-897 203 chr2L 9285027 9285040 chr2L 9285102 9285114 4 75 8.0 5.5 6.8 0.5 87 chr2L 9285027 intron Ggamma30A + chr2L 9285070 intron Ggamma30A + chr2L 9285114 intron Ggamma30A + chr2L_4_9285001 chr2L_9285001 RAL-897 204 chr2L 9287324 9287356 chr2L 9287421 9287453 16 95 6.0 3.5 4.8 2.8 129 chr2L 9287324 intron Ggamma30A + chr2L 9287388 intron Ggamma30A + chr2L 9287453 intron Ggamma30A + chr2L_16_9285001 chr2L_9285001 RAL-897 205 chr2L 9297379 9297399 chr2L 9297456 9297476 4 77 5.0 7.5 6.2 0.6 97 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297476 3` UTR Ggamma30A + chr2L_4_9295001 chr2L_9295001 RAL-897 206 chr2L 9393516 9393528 chr2L 9396482 9396494 jockey 4 2966 0.5 9.0 4.8 0.7 2978 chr2L 9393516 intron Shawl - chr2L 9395005 intron Shawl - chr2L 9396494 intron Shawl - chr2L_4_9395001 chr2L_9395001 RAL-897 207 chr2L 9417704 9417737 chr2L 9418019 9418051 21 312 6.0 2.5 4.2 4.0 347 chr2L 9417704 intron Mco1 + chr2L 9417878 intron Mco1 + chr2L 9418051 intron Mco1 + chr2L_21_9415001 chr2L_9415001 RAL-897 208 chr2L 9454979 9455007 chr2L 9455081 9455109 7 102 3.5 1.0 2.2 2.2 130 chr2L 9454979 intron numb + chr2L 9455044 intron numb + chr2L 9455109 intron numb + chr2L_7_9455001 chr2L_9455001 RAL-897 209 chr2L 9460757 9460768 chr2L 9460843 9460848 7 85 4.0 0.0 2.0 2.3 91 chr2L 9460757 intron numb + chr2L 9460802 intron numb + chr2L 9460848 intron numb + chr2L_7_9460001 chr2L_9460001 RAL-897 210 chr2L 9506428 9506445 chr2L 9506578 9506595 6 150 4.5 2.5 3.5 1.3 167 chr2L 9506428 intron CG33298 + chr2L 9506512 intron CG33298 + chr2L 9506595 intron CG33298 + chr2L_6_9505001 chr2L_9505001 RAL-897 211 chr2L 9509071 9509101 chr2L 9509155 9509185 15 82 5.0 1.0 3.0 3.8 114 chr2L 9509071 intron CG33298 + chr2L 9509128 intron CG33298 + chr2L 9509185 intron CG33298 + chr2L_15_9505001 chr2L_9505001 RAL-897 212 chr2L 9543764 9543785 chr2L 9543840 9543862 6 77 0.5 2.5 1.5 2.4 98 chr2L 9543764 intergenic Cpr30B +,CG13113 + chr2L 9543813 intergenic Cpr30B +,CG13113 + chr2L 9543862 intergenic Cpr30B +,CG13113 + chr2L_6_9540001 chr2L_9540001 RAL-897 213 chr2L 9873760 9873792 chr2L 9873856 9873888 15 96 2.5 1.5 2.0 5.0 128 chr2L 9873760 intron nAChRalpha6 - chr2L 9873824 intron nAChRalpha6 - chr2L 9873888 intron nAChRalpha6 - chr2L_15_9870001 chr2L_9870001 RAL-897 214 chr2L 9973730 9973758 chr2L 9980846 9980871 HMS-Beagle 17 7116 8.0 6.0 7.0 2.1 7141 chr2L 9973730 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980871 intergenic not near genes chr2L_17_9975001 chr2L_9975001 RAL-897 215 chr2L 9986352 9986381 chr2L 9986447 9986475 9 89 6.0 6.5 6.2 1.2 123 chr2L 9986352 intron bib + chr2L 9986414 intron bib + chr2L 9986475 intron bib + chr2L_9_9985001 chr2L_9985001 RAL-897 216 chr2L 10051725 10051752 chr2L 10051810 10051834 14 82 11.0 10.5 10.8 1.2 109 chr2L 10051725 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051834 5` UTR CR44874 + chr2L_14_10050001 chr2L_10050001 RAL-897 217 chr2L 10087476 10087488 chr2L 10087553 10087565 5 77 8.5 13.0 10.8 0.4 89 chr2L 10087476 intron CG44153 - chr2L 10087520 intron CG44153 - chr2L 10087565 intron CG44153 - chr2L_5_10085001 chr2L_10085001 RAL-897 218 chr2L 10095630 10095659 chr2L 10095710 10095739 9 79 2.0 2.5 2.2 2.8 109 chr2L 10095630 intron CG44153 - chr2L 10095684 intron CG44153 - chr2L 10095739 intron CG44153 - chr2L_9_10095001 chr2L_10095001 RAL-897 219 chr2L 10100360 10100383 chr2L 10100443 10100458 8 80 2.0 5.5 3.8 1.7 98 chr2L 10100360 intron CG44153 - chr2L 10100409 intron CG44153 - chr2L 10100458 intron CG44153 - chr2L_8_10100001 chr2L_10100001 RAL-897 220 chr2L 10153202 10153237 chr2L 10153281 10153316 12 76 5.0 3.5 4.2 2.3 114 chr2L 10153202 intron,exon CG44153 -,CG4839 + chr2L 10153259 intron,intron CG44153 -,CG4839 + chr2L 10153316 intron,intron CG44153 -,CG4839 + chr2L_12_10150001 chr2L_10150001 RAL-897 221 chr2L 10156323 10156354 chr2L 10163792 10163817 blood 14 7464 4.0 7.5 5.8 2.1 7494 chr2L 10156323 intron,3` UTR CG44153 -,CG4839 + chr2L 10160070 intron CG44153 - chr2L 10163817 intron CG44153 - chr2L_14_10160001 chr2L_10160001 RAL-897 222 chr2L 10177906 10177930 chr2L 10177986 10178010 10 80 2.0 3.0 2.5 2.9 104 chr2L 10177906 intron CG44153 - chr2L 10177958 intron CG44153 - chr2L 10178010 intron CG44153 - chr2L_10_10175001 chr2L_10175001 RAL-897 223 chr2L 10209848 10209860 chr2L 10209925 10209937 4 74 2.0 0.0 1.0 2.0 89 chr2L 10209848 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209892 3` UTR CG5727 - chr2L 10209937 3` UTR CG5727 - chr2L_4_10205001 chr2L_10205001 RAL-897 224 chr2L 10276203 10276225 chr2L 10276280 10276303 4 78 1.0 2.5 1.8 1.4 100 chr2L 10276203 intron Utx - chr2L 10276253 intron Utx - chr2L 10276303 intron Utx - chr2L_4_10275001 chr2L_10275001 RAL-897 225 chr2L 10278013 10278035 chr2L 10278093 10278115 8 80 2.5 2.0 2.2 2.5 102 chr2L 10278013 intron Utx - chr2L 10278064 intron Utx - chr2L 10278115 intron Utx - chr2L_8_10275001 chr2L_10275001 RAL-897 226 chr2L 10480316 10480336 chr2L 10480394 10480413 7 76 2.0 0.5 1.2 3.2 97 chr2L 10480316 intron RluA-2 + chr2L 10480364 intron RluA-2 + chr2L 10480413 intron RluA-2 + chr2L_7_10480001 chr2L_10480001 RAL-897 227 chr2L 10490275 10490309 chr2L 10490357 10490390 17 81 2.5 3.0 2.8 4.5 115 chr2L 10490275 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490332 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490390 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_17_10490001 chr2L_10490001 RAL-897 228 chr2L 10564331 10564342 chr2L 10564394 10564423 6 75 1.5 4.0 2.8 1.6 92 chr2L 10564331 intron Trim9 + chr2L 10564377 intron Trim9 + chr2L 10564423 intron Trim9 + chr2L_6_10560001 chr2L_10560001 RAL-897 229 chr2L 10572702 10572727 chr2L 10572783 10572804 18 79 5.5 4.0 4.8 3.1 102 chr2L 10572702 intron Trim9 + chr2L 10572753 intron Trim9 + chr2L 10572804 intron Trim9 + chr2L_18_10570001 chr2L_10570001 RAL-897 230 chr2L 10580790 10580823 chr2L 10580871 10580904 10 81 2.0 2.5 2.2 3.1 114 chr2L 10580790 intron Trim9 + chr2L 10580847 intron Trim9 + chr2L 10580904 intron Trim9 + chr2L_10_10580001 chr2L_10580001 RAL-897 231 chr2L 10592854 10592873 chr2L 10600516 10600535 opus 9 7662 2.5 4.0 3.2 2.1 7681 chr2L 10592854 intron Trim9 + chr2L 10596694 intron Trim9 + chr2L 10600535 intron Trim9 + chr2L_9_10595001 chr2L_10595001 RAL-897 232 chr2L 10604195 10604221 chr2L 10604279 10604303 4 82 5.5 0.0 2.8 1.1 108 chr2L 10604195 intron Trim9 + chr2L 10604249 intron Trim9 + chr2L 10604303 intron Trim9 + chr2L_4_10600001 chr2L_10600001 RAL-897 233 chr2L 10631214 10631237 chr2L 10631346 10631368 5 132 1.0 0.0 0.5 3.3 154 chr2L 10631214 intron CG7329 - chr2L 10631291 intron CG7329 - chr2L 10631368 intron CG7329 - chr2L_5_10630001 chr2L_10630001 RAL-897 234 chr2L 10755567 10755591 chr2L 10755676 10755700 14 108 4.0 2.0 3.0 3.5 133 chr2L 10755567 intron CG17124 - chr2L 10755634 intron CG17124 - chr2L 10755700 intron CG17124 - chr2L_14_10755001 chr2L_10755001 RAL-897 235 chr2L 10787944 10788024 chr2L 10788024 10788100 6 77 0.0 0.0 0.0 6.0 156 chr2L 10787944 intron CG31869 - chr2L 10788022 intron CG31869 - chr2L 10788100 intron CG31869 - chr2L_6_10785001 chr2L_10785001 RAL-897 236 chr2L 10862843 10862874 chr2L 10864456 10864486 Rt1c 14 1609 8.0 8.5 8.2 1.5 1643 chr2L 10862843 3` UTR CR43807 - chr2L 10863664 intron CR43807 - chr2L 10864486 3` UTR CR43807 - chr2L_14_10860001 chr2L_10860001 RAL-897 237 chr2L 10891454 10891488 chr2L 10891648 10891662 12 192 4.0 4.0 4.0 2.4 208 chr2L 10891454 intergenic not near genes chr2L 10891558 intergenic not near genes chr2L 10891662 intergenic not near genes chr2L_12_10890001 chr2L_10890001 RAL-897 238 chr2L 10894717 10894737 chr2L 10895159 10895179 5 442 3.0 3.0 3.0 1.2 462 chr2L 10894717 3` UTR CR44491 - chr2L 10894948 3` UTR CR44491 - chr2L 10895179 3` UTR CR44491 - chr2L_5_10890001 chr2L_10890001 RAL-897 239 chr2L 10919797 10919826 chr2L 10919886 10919894 10 87 5.0 3.5 4.2 1.9 97 chr2L 10919797 intron dpr2 - chr2L 10919846 intron dpr2 - chr2L 10919894 intron dpr2 - chr2L_10_10915001 chr2L_10915001 RAL-897 240 chr2L 10946962 10946977 chr2L 10956157 10956192 roo 7 9210 5.5 8.0 6.8 0.9 9230 chr2L 10946962 intron dpr2 - chr2L 10951577 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_7_10950001 chr2L_10950001 RAL-897 241 chr2L 11092027 11092056 chr2L 11096654 11096683 19 4630 49.5 55.0 52.2 0.4 4656 chr2L 11092027 exon CG4705 + chr2L 11094355 exon CG4705 + chr2L 11096683 exon Ge-1 - chr2L_19_11090001 chr2L_11090001 RAL-897 242 chr2L 11195135 11195151 chr2L 11195218 11195234 5 83 0.0 0.0 0.0 5.0 99 chr2L 11195135 intron Ca-beta - chr2L 11195184 intron Ca-beta - chr2L 11195234 intron Ca-beta - chr2L_5_11195001 chr2L_11195001 RAL-897 243 chr2L 11224063 11224076 chr2L 11224173 11224187 5 111 6.0 5.0 5.5 0.8 124 chr2L 11224063 intron ab + chr2L 11224125 intron ab + chr2L 11224187 intron ab + chr2L_5_11220001 chr2L_11220001 RAL-897 244 chr2L 11248571 11248590 chr2L 11248652 11248673 12 81 6.5 5.5 6.0 1.7 102 chr2L 11248571 intron ab + chr2L 11248622 intron ab + chr2L 11248673 intron ab + chr2L_12_11245001 chr2L_11245001 RAL-897 245 chr2L 11379947 11379973 chr2L 11380029 11380032 5 73 3.5 0.0 1.8 1.8 85 chr2L 11379947 intergenic not near genes chr2L 11379990 intergenic not near genes chr2L 11380032 intergenic not near genes chr2L_5_11375001 chr2L_11375001 RAL-897 246 chr2L 11380610 11380644 chr2L 11380687 11380721 10 76 2.5 1.5 2.0 3.3 111 chr2L 11380610 intergenic not near genes chr2L 11380666 intergenic not near genes chr2L 11380721 intergenic not near genes chr2L_10_11380001 chr2L_11380001 RAL-897 247 chr2L 11404785 11404812 chr2L 11404861 11404887 8 75 0.5 4.5 2.5 2.3 102 chr2L 11404785 intergenic not near genes chr2L 11404836 intergenic not near genes chr2L 11404887 intergenic not near genes chr2L_8_11400001 chr2L_11400001 RAL-897 248 chr2L 11418657 11418688 chr2L 11418736 11418767 17 79 2.5 4.5 3.5 3.8 110 chr2L 11418657 intergenic not near genes chr2L 11418712 intergenic not near genes chr2L 11418767 intergenic not near genes chr2L_17_11415001 chr2L_11415001 RAL-897 249 chr2L 11458946 11458976 chr2L 11459062 11459092 12 116 3.0 3.5 3.2 2.9 146 chr2L 11458946 intergenic not near genes chr2L 11459019 intergenic not near genes chr2L 11459092 intergenic not near genes chr2L_12_11455001 chr2L_11455001 RAL-897 250 chr2L 11467984 11468016 chr2L 11468277 11468309 4 289 1.0 4.5 2.8 1.1 325 chr2L 11467984 intergenic not near genes chr2L 11468146 intergenic not near genes chr2L 11468309 intergenic not near genes chr2L_4_11465001 chr2L_11465001 RAL-897 251 chr2L 11537982 11537995 chr2L 11538073 11538087 4 91 4.0 5.0 4.5 0.7 105 chr2L 11537982 intergenic not near genes chr2L 11538034 intergenic not near genes chr2L 11538087 intergenic not near genes chr2L_4_11535001 chr2L_11535001 RAL-897 252 chr2L 11537998 11538010 chr2L 11538070 11538077 4 76 2.5 3.5 3.0 1.0 79 chr2L 11537998 intergenic not near genes chr2L 11538038 intergenic not near genes chr2L 11538077 intergenic not near genes chr2L_4_11535001 chr2L_11535001 RAL-897 253 chr2L 11549889 11549916 chr2L 11550462 11550488 7 572 1.0 3.0 2.0 2.3 599 chr2L 11549889 3` UTR CR44494 - chr2L 11550188 intergenic CR44494 - chr2L 11550488 intergenic CR44494 - chr2L_7_11550001 chr2L_11550001 RAL-897 254 chr2L 11557817 11557832 chr2L 11557927 11557943 6 110 11.0 6.0 8.5 0.6 126 chr2L 11557817 intergenic not near genes chr2L 11557880 intergenic not near genes chr2L 11557943 intergenic not near genes chr2L_6_11555001 chr2L_11555001 RAL-897 255 chr2L 11557833 11557848 chr2L 11557926 11557958 8 107 5.5 6.0 5.8 1.2 125 chr2L 11557833 intergenic not near genes chr2L 11557896 intergenic not near genes chr2L 11557958 intergenic not near genes chr2L_8_11555001 chr2L_11555001 RAL-897 256 chr2L 11563638 11563669 chr2L 11568842 11568869 copia 12 5203 6.5 3.0 4.8 2.1 5231 chr2L 11563638 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568869 intergenic not near genes chr2L_12_11565001 chr2L_11565001 RAL-897 257 chr2L 11570259 11570285 chr2L 11570656 11570682 12 396 3.5 7.5 5.5 1.8 423 chr2L 11570259 intergenic not near genes chr2L 11570470 intergenic not near genes chr2L 11570682 intergenic not near genes chr2L_12_11570001 chr2L_11570001 RAL-897 258 chr2L 11612663 11612693 chr2L 11612751 11612781 11 88 3.5 5.5 4.5 2.0 118 chr2L 11612663 intron kek2 + chr2L 11612722 intron kek2 + chr2L 11612781 intron kek2 + chr2L_11_11610001 chr2L_11610001 RAL-897 259 chr2L 11614081 11614086 chr2L 11615547 11615581 hopper2 8 1484 3.5 5.0 4.2 1.5 1500 chr2L 11614081 intron kek2 + chr2L 11614831 intron kek2 + chr2L 11615581 intron kek2 + chr2L_8_11610001 chr2L_11610001 RAL-897 260 chr2L 11713508 11713540 chr2L 11720976 11721008 blood 21 7464 6.0 6.0 6.0 3.0 7500 chr2L 11713508 intergenic not near genes chr2L 11717258 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_21_11715001 chr2L_11715001 RAL-897 261 chr2L 11820431 11820465 chr2L 11820512 11820546 12 79 3.0 3.0 3.0 3.0 115 chr2L 11820431 intron Pde1c - chr2L 11820488 intron Pde1c - chr2L 11820546 intron Pde1c - chr2L_12_11820001 chr2L_11820001 RAL-897 262 chr2L 11875218 11875230 chr2L 11875323 11875343 6 112 5.5 3.5 4.5 1.1 125 chr2L 11875218 intron Pde1c - chr2L 11875280 intron Pde1c - chr2L 11875343 intron Pde1c - chr2L_6_11875001 chr2L_11875001 RAL-897 263 chr2L 11962061 11962071 chr2L 11962139 11962149 7 78 4.5 2.5 3.5 1.6 88 chr2L 11962061 3` UTR CR43314 - chr2L 11962105 intron CR43314 - chr2L 11962149 intron CR43314 - chr2L_7_11960001 chr2L_11960001 RAL-897 264 chr2L 11962073 11962085 chr2L 11962136 11962163 7 76 3.0 2.5 2.8 1.8 90 chr2L 11962073 intron CR43314 - chr2L 11962118 intron CR43314 - chr2L 11962163 intron CR43314 - chr2L_7_11960001 chr2L_11960001 RAL-897 265 chr2L 12067332 12067357 chr2L 12074384 12074409 297 8 7052 5.0 2.5 3.8 1.7 7077 chr2L 12067332 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074409 intergenic not near genes chr2L_8_12070001 chr2L_12070001 RAL-897 266 chr2L 12156110 12156137 chr2L 12156199 12156226 4 89 2.5 1.5 2.0 1.3 116 chr2L 12156110 intron CG31760 + chr2L 12156168 intron CG31760 + chr2L 12156226 intron CG31760 + chr2L_4_12155001 chr2L_12155001 RAL-897 267 chr2L 12229579 12229607 chr2L 12229656 12229684 15 75 4.0 1.0 2.5 4.3 105 chr2L 12229579 intron aret + chr2L 12229632 intron aret + chr2L 12229684 intron aret + chr2L_15_12225001 chr2L_12225001 RAL-897 268 chr2L 12293581 12293591 chr2L 12293660 12293688 6 92 5.0 2.0 3.5 1.3 107 chr2L 12293581 intron aret + chr2L 12293634 intron aret + chr2L 12293688 intron aret + chr2L_6_12290001 chr2L_12290001 RAL-897 269 chr2L 12305415 12305438 chr2L 12305503 12305522 14 87 3.5 5.5 4.5 2.5 107 chr2L 12305415 intron aret + chr2L 12305468 intron aret + chr2L 12305522 intron aret + chr2L_14_12305001 chr2L_12305001 RAL-897 270 chr2L 12396052 12396062 chr2L 12396146 12396156 6 94 1.5 0.0 0.8 3.3 104 chr2L 12396052 intron bru-2 + chr2L 12396104 intron bru-2 + chr2L 12396156 intron bru-2 + chr2L_6_12395001 chr2L_12395001 RAL-897 271 chr2L 12481386 12481399 chr2L 12481468 12481481 5 82 5.5 4.5 5.0 0.8 95 chr2L 12481386 intron bun - chr2L 12481434 intron bun - chr2L 12481481 intron bun - chr2L_5_12480001 chr2L_12480001 RAL-897 272 chr2L 12487884 12487919 chr2L 12487965 12488000 14 76 4.5 5.0 4.8 2.4 116 chr2L 12487884 intron bun - chr2L 12487942 intron bun - chr2L 12488000 intron bun - chr2L_14_12485001 chr2L_12485001 RAL-897 273 chr2L 12529251 12529265 chr2L 12529387 12529417 6 148 1.0 1.5 1.2 2.7 166 chr2L 12529251 intron bun - chr2L 12529334 intron bun - chr2L 12529417 intron bun - chr2L_6_12525001 chr2L_12525001 RAL-897 274 chr2L 12558322 12558352 chr2L 12565451 12565480 HMS-Beagle 11 7128 4.0 2.0 3.0 2.8 7158 chr2L 12558322 intergenic not near genes chr2L 12561901 intergenic not near genes chr2L 12565480 intergenic not near genes chr2L_11_12560001 chr2L_12560001 RAL-897 275 chr2L 12587024 12587053 chr2L 12587101 12587121 18 73 5.0 8.0 6.5 2.4 97 chr2L 12587024 intergenic not near genes chr2L 12587072 intergenic not near genes chr2L 12587121 intergenic not near genes chr2L_18_12585001 chr2L_12585001 RAL-897 276 chr2L 12612049 12612071 chr2L 12612168 12612188 8 118 3.5 6.0 4.8 1.4 139 chr2L 12612049 intron,intron nub +,Ref2 - chr2L 12612118 intron,intron nub +,Ref2 - chr2L 12612188 intron,intron nub +,Ref2 - chr2L_8_12610001 chr2L_12610001 RAL-897 277 chr2L 12653794 12653812 chr2L 12653910 12653927 4 116 3.0 4.5 3.8 0.8 133 chr2L 12653794 intergenic not near genes chr2L 12653860 intergenic not near genes chr2L 12653927 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-897 278 chr2L 12728566 12728591 chr2L 12728867 12728892 8 300 4.5 4.5 4.5 1.5 326 chr2L 12728566 intron MRP + chr2L 12728729 intron MRP + chr2L 12728892 intron MRP + chr2L_8_12725001 chr2L_12725001 RAL-897 279 chr2L 12731058 12731090 chr2L 12735825 12735856 F-element 6 4767 2.5 2.5 2.5 1.7 4798 chr2L 12731058 intron MRP + chr2L 12733457 intron MRP + chr2L 12735856 intron MRP + chr2L_6_12730001 chr2L_12730001 RAL-897 280 chr2L 12739174 12739205 chr2L 12743955 12743984 Doc 14 4780 5.0 5.0 5.0 2.3 4810 chr2L 12739174 exon MRP + chr2L 12741579 intron MRP + chr2L 12743984 exon MRP + chr2L_14_12740001 chr2L_12740001 RAL-897 281 chr2L 12751308 12751341 chr2L 12751391 12751424 20 80 4.0 4.5 4.2 3.8 116 chr2L 12751308 intergenic not near genes chr2L 12751366 intergenic not near genes chr2L 12751424 intergenic not near genes chr2L_20_12750001 chr2L_12750001 RAL-897 282 chr2L 12861695 12861730 chr2L 12863162 12863177 hobo 11 1462 3.5 9.0 6.2 1.5 1482 chr2L 12861695 intergenic not near genes chr2L 12862436 intergenic not near genes chr2L 12863177 intergenic not near genes chr2L_11_12860001 chr2L_12860001 RAL-897 283 chr2L 12894039 12894053 chr2L 12895490 12895515 hobo 5 1455 8.0 10.5 9.2 0.5 1476 chr2L 12894039 intergenic not near genes chr2L 12894777 intergenic not near genes chr2L 12895515 intergenic not near genes chr2L_5_12890001 chr2L_12890001 RAL-897 284 chr2L 12905486 12905500 chr2L 12905570 12905584 4 84 4.5 1.5 3.0 1.0 98 chr2L 12905486 intergenic not near genes chr2L 12905535 intergenic not near genes chr2L 12905584 intergenic not near genes chr2L_4_12905001 chr2L_12905001 RAL-897 285 chr2L 12933851 12933871 chr2L 12941318 12941337 blood 9 7465 11.5 4.0 7.8 1.0 7486 chr2L 12933851 intergenic not near genes chr2L 12937594 intergenic not near genes chr2L 12941337 intergenic not near genes chr2L_9_12935001 chr2L_12935001 RAL-897 286 chr2L 12933873 12933881 chr2L 12941316 12941348 blood 5 7462 6.0 3.0 4.5 0.9 7475 chr2L 12933873 intergenic not near genes chr2L 12937610 intergenic not near genes chr2L 12941348 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-897 287 chr2L 12949268 12949285 chr2L 12949353 12949378 13 88 4.5 11.5 8.0 1.4 110 chr2L 12949268 intergenic not near genes chr2L 12949323 intergenic not near genes chr2L 12949378 intergenic not near genes chr2L_13_12945001 chr2L_12945001 RAL-897 288 chr2L 13088962 13088970 chr2L 13089041 13089050 4 79 10.0 4.0 7.0 0.5 88 chr2L 13088962 intergenic not near genes chr2L 13089006 intergenic not near genes chr2L 13089050 intergenic not near genes chr2L_4_13085001 chr2L_13085001 RAL-897 289 chr2L 13088974 13088992 chr2L 13089038 13089065 10 75 5.0 3.5 4.2 1.9 91 chr2L 13088974 intergenic not near genes chr2L 13089020 intergenic not near genes chr2L 13089065 intergenic not near genes chr2L_10_13085001 chr2L_13085001 RAL-897 290 chr2L 13109450 13109474 chr2L 13109578 13109602 8 128 3.0 0.5 1.8 2.9 152 chr2L 13109450 3` UTR CG5142 + chr2L 13109526 intergenic CG5142 + chr2L 13109602 intergenic CG5142 + chr2L_8_13105001 chr2L_13105001 RAL-897 291 chr2L 13152228 13152260 chr2L 13152306 13152333 16 76 3.5 4.5 4.0 3.2 105 chr2L 13152228 intergenic not near genes chr2L 13152280 intergenic not near genes chr2L 13152333 intergenic not near genes chr2L_16_13150001 chr2L_13150001 RAL-897 292 chr2L 13215383 13215409 chr2L 13215657 13215684 9 273 1.5 4.0 2.8 2.4 301 chr2L 13215383 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215534 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215684 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_9_13215001 chr2L_13215001 RAL-897 293 chr2L 13231883 13231915 chr2L 13231994 13232018 15 110 1.5 4.0 2.8 3.9 135 chr2L 13231883 intergenic Prosalpha6T + chr2L 13231950 intergenic Prosalpha6T + chr2L 13232018 intergenic Prosalpha6T + chr2L_15_13230001 chr2L_13230001 RAL-897 294 chr2L 13326226 13326233 chr2L 13327268 13327275 5 1042 3.5 0.0 1.8 1.8 1049 chr2L 13326226 intron CG43778 - chr2L 13326750 intron CG43778 - chr2L 13327275 intron CG43778 - chr2L_5_13325001 chr2L_13325001 RAL-897 295 chr2L 13344327 13344354 chr2L 13344406 13344435 10 80 3.0 5.5 4.2 1.9 108 chr2L 13344327 intergenic not near genes chr2L 13344381 intergenic not near genes chr2L 13344435 intergenic not near genes chr2L_10_13340001 chr2L_13340001 RAL-897 296 chr2L 13355200 13355226 chr2L 13355276 13355302 9 76 1.0 1.0 1.0 4.5 102 chr2L 13355200 intergenic CG9395 - chr2L 13355251 intergenic CG9395 - chr2L 13355302 intergenic CG9395 - chr2L_9_13355001 chr2L_13355001 RAL-897 297 chr2L 13405647 13405678 chr2L 13410443 13410475 Doc 21 4795 3.5 5.5 4.5 3.8 4828 chr2L 13405647 exon CG7110 + chr2L 13408061 intron CG7110 + chr2L 13410475 intron CG7110 + chr2L_21_13405001 chr2L_13405001 RAL-897 298 chr2L 13422334 13422352 chr2L 13422425 13422443 4 90 1.5 1.0 1.2 1.8 109 chr2L 13422334 intron CG42784 + chr2L 13422388 intron CG42784 + chr2L 13422443 intron CG42784 + chr2L_4_13420001 chr2L_13420001 RAL-897 299 chr2L 13458410 13458443 chr2L 13458587 13458618 12 170 5.0 2.5 3.8 2.5 208 chr2L 13458410 intron,3` UTR CG42784 +,CR45684 - chr2L 13458514 intron,3` UTR CG42784 +,CR45684 - chr2L 13458618 intron CG42784 + chr2L_12_13455001 chr2L_13455001 RAL-897 300 chr2L 13460344 13460375 chr2L 13460487 13460518 7 142 0.5 4.0 2.2 2.2 174 chr2L 13460344 intron CG42784 + chr2L 13460431 intron CG42784 + chr2L 13460518 intron CG42784 + chr2L_7_13460001 chr2L_13460001 RAL-897 301 chr2L 13604329 13604341 chr2L 13604770 13604778 5 440 10.0 0.0 5.0 0.8 449 chr2L 13604329 intron kuz + chr2L 13604554 intron kuz + chr2L 13604778 intron kuz + chr2L_5_13600001 chr2L_13600001 RAL-897 302 chr2L 13633704 13633733 chr2L 13633808 13633835 9 101 5.5 6.0 5.8 1.3 131 chr2L 13633704 intron kuz + chr2L 13633770 intron kuz + chr2L 13633835 intron kuz + chr2L_9_13630001 chr2L_13630001 RAL-897 303 chr2L 13710973 13710979 chr2L 13711216 13711222 4 243 2.0 1.5 1.8 1.4 249 chr2L 13710973 intron CG31814 - chr2L 13711098 intron CG31814 - chr2L 13711222 intron CG31814 - chr2L_4_13710001 chr2L_13710001 RAL-897 304 chr2L 13713135 13713146 chr2L 13713291 13713303 9 157 6.5 3.5 5.0 1.5 168 chr2L 13713135 intron CG31814 - chr2L 13713219 intron CG31814 - chr2L 13713303 intron CG31814 - chr2L_9_13710001 chr2L_13710001 RAL-897 305 chr2L 13761809 13761830 chr2L 13762918 13762922 Doc 4 1106 12.5 7.0 9.8 0.4 1113 chr2L 13761809 intron TM9SF4 + chr2L 13762366 intron TM9SF4 + chr2L 13762922 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-897 306 chr2L 13853082 13853118 chr2L 13862232 13862268 roo 17 9147 6.5 3.0 4.8 2.9 9186 chr2L 13853082 intron CenG1A + chr2L 13857675 intron CenG1A + chr2L 13862268 intron CenG1A + chr2L_17_13855001 chr2L_13855001 RAL-897 307 chr2L 13918816 13918847 chr2L 13918902 13918933 7 87 3.5 4.5 4.0 1.4 117 chr2L 13918816 intron Ance-3 + chr2L 13918874 intron Ance-3 + chr2L 13918933 intron Ance-3 + chr2L_7_13915001 chr2L_13915001 RAL-897 308 chr2L 14017768 14017793 chr2L 14017860 14017885 8 92 5.5 7.0 6.2 1.1 117 chr2L 14017768 intron bgm + chr2L 14017826 intron bgm + chr2L 14017885 intron bgm + chr2L_8_14015001 chr2L_14015001 RAL-897 309 chr2L 14137583 14137608 chr2L 14137657 14137682 9 72 5.5 7.0 6.2 1.2 99 chr2L 14137583 intron CG17341 + chr2L 14137632 intron CG17341 + chr2L 14137682 intron CG17341 + chr2L_9_14135001 chr2L_14135001 RAL-897 310 chr2L 14148674 14148700 chr2L 14148792 14148818 5 118 0.5 1.5 1.0 2.5 144 chr2L 14148674 intron CG17341 + chr2L 14148746 intron CG17341 + chr2L 14148818 intron CG17341 + chr2L_5_14145001 chr2L_14145001 RAL-897 311 chr2L 14160686 14160717 chr2L 14160771 14160803 4 86 1.0 0.5 0.8 2.2 117 chr2L 14160686 intergenic CG17341 +,CG43332 - chr2L 14160744 intergenic CG17341 +,CG43332 - chr2L 14160803 intergenic CG17341 +,CG43332 - chr2L_4_14160001 chr2L_14160001 RAL-897 312 chr2L 14222299 14222329 chr2L 14222386 14222415 13 84 2.0 3.5 2.8 3.4 116 chr2L 14222299 intron Dyrk2 - chr2L 14222357 intron Dyrk2 - chr2L 14222415 intron Dyrk2 - chr2L_13_14220001 chr2L_14220001 RAL-897 313 chr2L 14236238 14236267 chr2L 14236335 14236349 10 95 5.5 0.0 2.8 2.6 111 chr2L 14236238 5` UTR CR44728 + chr2L 14236294 5` UTR CR44728 + chr2L 14236349 intergenic CR44728 + chr2L_10_14235001 chr2L_14235001 RAL-897 314 chr2L 14374779 14374800 chr2L 14374870 14374891 8 90 0.5 1.0 0.8 4.4 112 chr2L 14374779 intergenic not near genes chr2L 14374835 intergenic not near genes chr2L 14374891 intergenic not near genes chr2L_8_14370001 chr2L_14370001 RAL-897 315 chr2L 14402367 14402396 chr2L 14402444 14402472 13 73 3.5 1.0 2.2 4.1 105 chr2L 14402367 intron elB - chr2L 14402420 intron elB - chr2L 14402472 intron elB - chr2L_13_14400001 chr2L_14400001 RAL-897 316 chr2L 14442379 14442392 chr2L 14442463 14442476 8 84 3.5 4.5 4.0 1.6 97 chr2L 14442379 intergenic not near genes chr2L 14442428 intergenic not near genes chr2L 14442476 intergenic not near genes chr2L_8_14440001 chr2L_14440001 RAL-897 317 chr2L 14465590 14465618 chr2L 14469053 14469081 hopper2 7 3463 2.0 1.0 1.5 2.8 3491 chr2L 14465590 intergenic not near genes chr2L 14467336 intergenic not near genes chr2L 14469081 intergenic not near genes chr2L_7_14465001 chr2L_14465001 RAL-897 318 chr2L 14482114 14482139 chr2L 14482219 14482244 11 104 10.0 3.0 6.5 1.5 130 chr2L 14482114 intergenic not near genes chr2L 14482179 intergenic not near genes chr2L 14482244 intergenic not near genes chr2L_11_14480001 chr2L_14480001 RAL-897 319 chr2L 14484215 14484231 chr2L 14484291 14484308 12 75 8.0 9.5 8.8 1.2 93 chr2L 14484215 intergenic not near genes chr2L 14484262 intergenic not near genes chr2L 14484308 intergenic not near genes chr2L_12_14480001 chr2L_14480001 RAL-897 320 chr2L 14564711 14564731 chr2L 14564795 14564815 5 84 3.5 0.0 1.8 1.8 104 chr2L 14564711 intergenic not near genes chr2L 14564763 intergenic not near genes chr2L 14564815 intergenic not near genes chr2L_5_14560001 chr2L_14560001 RAL-897 321 chr2L 14601975 14601992 chr2L 14602059 14602076 10 84 7.0 4.5 5.8 1.5 101 chr2L 14601975 exon osp - chr2L 14602026 intron osp - chr2L 14602076 intron osp - chr2L_10_14600001 chr2L_14600001 RAL-897 322 chr2L 14642575 14642604 chr2L 14651737 14651767 roo 4 9162 0.0 1.5 0.8 2.2 9192 chr2L 14642575 intron osp - chr2L 14647171 intron osp - chr2L 14651767 intron osp - chr2L_4_14645001 chr2L_14645001 RAL-897 323 chr2L 14707207 14707240 chr2L 14707326 14707359 23 116 5.5 3.0 4.2 4.4 152 chr2L 14707207 intergenic not near genes chr2L 14707283 intergenic not near genes chr2L 14707359 intergenic not near genes chr2L_23_14705001 chr2L_14705001 RAL-897 324 chr2L 14707590 14707619 chr2L 14708594 14708624 8 1005 4.5 19.0 11.8 0.6 1034 chr2L 14707590 intergenic not near genes chr2L 14708107 intergenic not near genes chr2L 14708624 intergenic not near genes chr2L_8_14705001 chr2L_14705001 RAL-897 325 chr2L 14781561 14781590 chr2L 14781662 14781691 13 100 3.5 2.5 3.0 3.2 130 chr2L 14781561 intergenic not near genes chr2L 14781626 intergenic not near genes chr2L 14781691 intergenic not near genes chr2L_13_14780001 chr2L_14780001 RAL-897 326 chr2L 14803881 14803913 chr2L 14809084 14809108 copia 14 5199 3.0 9.5 6.2 1.9 5227 chr2L 14803881 intergenic not near genes chr2L 14806494 intergenic not near genes chr2L 14809108 intergenic not near genes chr2L_14_14805001 chr2L_14805001 RAL-897 327 chr2L 14889951 14889983 chr2L 14890376 14890408 jockey 13 425 9.0 6.0 7.5 1.5 457 chr2L 14889951 intergenic not near genes chr2L 14890180 intergenic not near genes chr2L 14890408 intergenic not near genes chr2L_13_14890001 chr2L_14890001 RAL-897 328 chr2L 14922525 14922550 chr2L 14922642 14922669 7 115 3.5 4.0 3.8 1.5 144 chr2L 14922525 intron CG42313 - chr2L 14922597 intron CG42313 - chr2L 14922669 intron CG42313 - chr2L_7_14920001 chr2L_14920001 RAL-897 329 chr2L 14937022 14937038 chr2L 14937103 14937119 9 81 5.5 4.5 5.0 1.5 97 chr2L 14937022 intron CG42313 - chr2L 14937070 intron CG42313 - chr2L 14937119 intron CG42313 - chr2L_9_14935001 chr2L_14935001 RAL-897 330 chr2L 14984378 14984397 chr2L 14991980 14991994 opus 4 7601 8.5 2.0 5.2 0.6 7616 chr2L 14984378 intron mol - chr2L 14988186 intron mol - chr2L 14991994 intron mol - chr2L_4_14985001 chr2L_14985001 RAL-897 331 chr2L 15000855 15000855 chr2L 15000981 15001013 6 132 23.5 32.5 28.0 0.2 158 chr2L 15000855 intergenic not near genes chr2L 15000934 intergenic not near genes chr2L 15001013 intergenic not near genes chr2L_6_15000001 chr2L_15000001 RAL-897 332 chr2L 15003548 15003571 chr2L 15003628 15003655 13 80 5.0 8.5 6.8 1.7 107 chr2L 15003548 intergenic not near genes chr2L 15003602 intergenic not near genes chr2L 15003655 intergenic not near genes chr2L_13_15000001 chr2L_15000001 RAL-897 333 chr2L 15013172 15013177 chr2L 15013257 15013286 6 100 0.0 0.5 0.2 5.0 114 chr2L 15013172 intergenic not near genes chr2L 15013229 intergenic not near genes chr2L 15013286 intergenic not near genes chr2L_6_15010001 chr2L_15010001 RAL-897 334 chr2L 15044724 15044737 chr2L 15044794 15044813 6 75 2.0 0.5 1.2 2.7 89 chr2L 15044724 intergenic ck - chr2L 15044768 intergenic ck - chr2L 15044813 intergenic ck - chr2L_6_15040001 chr2L_15040001 RAL-897 335 chr2L 15078084 15078101 chr2L 15078172 15078189 7 87 1.5 4.5 3.0 1.8 105 chr2L 15078084 intron CG15270 + chr2L 15078136 intron CG15270 + chr2L 15078189 intron CG15270 + chr2L_7_15075001 chr2L_15075001 RAL-897 336 chr2L 15161251 15161276 chr2L 15161387 15161412 8 136 2.0 4.0 3.0 2.0 161 chr2L 15161251 intergenic CR44770 + chr2L 15161332 intergenic CR44770 + chr2L 15161412 intergenic CR44770 +,CG4168 - chr2L_8_15160001 chr2L_15160001 RAL-897 337 chr2L 15226373 15226384 chr2L 15226446 15226460 6 75 5.5 2.5 4.0 1.2 87 chr2L 15226373 intergenic not near genes chr2L 15226416 intergenic not near genes chr2L 15226460 intergenic not near genes chr2L_6_15225001 chr2L_15225001 RAL-897 338 chr2L 15226385 15226395 chr2L 15226443 15226471 4 71 2.0 1.5 1.8 1.4 86 chr2L 15226385 intergenic not near genes chr2L 15226428 intergenic not near genes chr2L 15226471 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-897 339 chr2L 15309352 15309382 chr2L 15309455 15309485 7 103 1.5 1.0 1.2 3.2 133 chr2L 15309352 intergenic not near genes chr2L 15309418 intergenic not near genes chr2L 15309485 intergenic not near genes chr2L_7_15305001 chr2L_15305001 RAL-897 340 chr2L 15394175 15394201 chr2L 15394264 15394291 5 90 1.5 0.0 0.8 2.8 116 chr2L 15394175 intergenic not near genes chr2L 15394233 intergenic not near genes chr2L 15394291 intergenic not near genes chr2L_5_15390001 chr2L_15390001 RAL-897 341 chr2L 15445656 15445678 chr2L 15445736 15445741 6 75 3.5 4.5 4.0 1.2 85 chr2L 15445656 intergenic not near genes chr2L 15445698 intergenic not near genes chr2L 15445741 intergenic not near genes chr2L_6_15445001 chr2L_15445001 RAL-897 342 chr2L 15446052 15446084 chr2L 15453521 15453553 blood 15 7467 4.5 2.0 3.2 3.6 7501 chr2L 15446052 intergenic not near genes chr2L 15449802 intergenic not near genes chr2L 15453553 intergenic not near genes chr2L_15_15445001 chr2L_15445001 RAL-897 343 chr2L 15483282 15483292 chr2L 15483368 15483378 4 86 3.5 0.0 1.8 1.4 96 chr2L 15483282 intergenic not near genes chr2L 15483330 intergenic not near genes chr2L 15483378 intergenic not near genes chr2L_4_15480001 chr2L_15480001 RAL-897 344 chr2L 15535884 15535916 chr2L 15535974 15536006 13 87 6.5 4.5 5.5 2.0 122 chr2L 15535884 intergenic not near genes chr2L 15535945 intergenic not near genes chr2L 15536006 intergenic not near genes chr2L_13_15535001 chr2L_15535001 RAL-897 345 chr2L 15586410 15586439 chr2L 15593461 15593491 297 8 7051 3.5 2.5 3.0 2.0 7081 chr2L 15586410 intergenic not near genes chr2L 15589950 intergenic not near genes chr2L 15593491 intergenic not near genes chr2L_8_15585001 chr2L_15585001 RAL-897 346 chr2L 15636677 15636692 chr2L 15636753 15636768 8 76 0.5 0.0 0.2 6.7 91 chr2L 15636677 intergenic not near genes chr2L 15636722 intergenic not near genes chr2L 15636768 intergenic not near genes chr2L_8_15635001 chr2L_15635001 RAL-897 347 chr2L 15643892 15643925 chr2L 15645972 15646006 17 2081 40.5 44.5 42.5 0.4 2114 chr2L 15643892 intergenic CG4587 - chr2L 15644949 3` UTR CG4587 - chr2L 15646006 3` UTR CG4587 - chr2L_17_15640001 chr2L_15640001 RAL-897 348 chr2L 15821060 15821077 chr2L 15821160 15821177 5 100 0.0 2.0 1.0 2.5 117 chr2L 15821060 intergenic not near genes chr2L 15821118 intergenic not near genes chr2L 15821177 intergenic not near genes chr2L_5_15820001 chr2L_15820001 RAL-897 349 chr2L 15823355 15823368 chr2L 15823431 15823444 4 76 5.0 3.5 4.2 0.8 89 chr2L 15823355 intergenic CR44601 - chr2L 15823400 intergenic CR44601 - chr2L 15823444 intergenic not near genes chr2L_4_15820001 chr2L_15820001 RAL-897 350 chr2L 15947641 15947673 chr2L 15947793 15947824 9 151 4.0 3.5 3.8 1.9 183 chr2L 15947641 intron beat-Ib - chr2L 15947732 intron beat-Ib - chr2L 15947824 intron beat-Ib - chr2L_9_15945001 chr2L_15945001 RAL-897 351 chr2L 15954184 15954211 chr2L 15954263 15954291 5 80 0.5 3.5 2.0 1.7 107 chr2L 15954184 intron beat-Ib - chr2L 15954238 intron beat-Ib - chr2L 15954291 intron beat-Ib - chr2L_5_15950001 chr2L_15950001 RAL-897 352 chr2L 15956030 15956058 chr2L 15957490 15957525 hobo 12 1466 4.0 4.0 4.0 2.4 1495 chr2L 15956030 intron beat-Ib - chr2L 15956778 intron beat-Ib - chr2L 15957525 intron beat-Ib - chr2L_12_15955001 chr2L_15955001 RAL-897 353 chr2L 15960852 15960864 chr2L 15961172 15961185 6 320 20.0 4.0 12.0 0.5 333 chr2L 15960852 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961018 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961185 intron,5` UTR beat-Ib -,CR43803 + chr2L_6_15960001 chr2L_15960001 RAL-897 354 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 8 145889 22.5 39.5 31.0 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-897 355 chr2L 16141148 16141190 chr2L 16146369 16146397 copia 8 5208 0.0 2.5 1.2 3.6 5249 chr2L 16141148 intergenic not near genes chr2L 16143772 intergenic not near genes chr2L 16146397 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-897 356 chr2L 9084336 9084340 chr2L 16217660 16217660 8 7133321 20.0 39.5 29.8 0.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-897 357 chr2L 16226191 16226208 chr2L 16226278 16226295 4 86 3.5 4.0 3.8 0.8 104 chr2L 16226191 intergenic not near genes chr2L 16226243 intergenic not near genes chr2L 16226295 intergenic not near genes chr2L_4_16225001 chr2L_16225001 RAL-897 358 chr2L 16232469 16232476 chr2L 16232547 16232553 5 77 3.5 3.5 3.5 1.1 84 chr2L 16232469 intron CG42817 + chr2L 16232511 intron CG42817 + chr2L 16232553 intron CG42817 + chr2L_5_16230001 chr2L_16230001 RAL-897 359 chr2L 16243224 16243369 chr2L 16243301 16243449 9 79 4.0 4.0 4.0 1.8 225 chr2L 16243224 exon CG42818 + chr2L 16243336 exon CG42818 + chr2L 16243449 exon CG42818 + chr2L_9_16240001 chr2L_16240001 RAL-897 360 chr2L 16280254 16280283 chr2L 16281425 16281447 1360 15 1169 5.5 10.0 7.8 1.7 1193 chr2L 16280254 intron crp - chr2L 16280850 intron crp - chr2L 16281447 intron crp - chr2L_15_16280001 chr2L_16280001 RAL-897 361 chr2L 16375391 16375419 chr2L 16375482 16375509 7 88 4.0 0.0 2.0 2.3 118 chr2L 16375391 intergenic not near genes chr2L 16375450 intergenic not near genes chr2L 16375509 intergenic not near genes chr2L_7_16375001 chr2L_16375001 RAL-897 362 chr2L 16391802 16391832 chr2L 16391877 16391908 6 76 2.0 3.5 2.8 1.6 106 chr2L 16391802 intergenic not near genes chr2L 16391855 intergenic not near genes chr2L 16391908 intergenic not near genes chr2L_6_16390001 chr2L_16390001 RAL-897 363 chr2L 16443076 16443112 chr2L 16443215 16443252 11 136 5.0 3.5 4.2 2.1 176 chr2L 16443076 intron CG5888 - chr2L 16443164 intron CG5888 - chr2L 16443252 intron CG5888 - chr2L_11_16440001 chr2L_16440001 RAL-897 364 chr2L 16448959 16448995 chr2L 16449043 16449048 19 75 4.0 6.5 5.2 3.1 89 chr2L 16448959 5` UTR Idgf2 + chr2L 16449004 5` UTR Idgf2 + chr2L 16449048 5` UTR Idgf2 + chr2L_19_16445001 chr2L_16445001 RAL-897 365 chr2L 16535472 16535486 chr2L 16535705 16535711 5 231 4.5 1.5 3.0 1.2 239 chr2L 16535472 intergenic CR45355 - chr2L 16535592 intergenic CR45355 - chr2L 16535711 intergenic CR45355 - chr2L_5_16535001 chr2L_16535001 RAL-897 366 chr2L 16597938 16597950 chr2L 16598045 16598057 6 106 2.0 1.5 1.8 2.1 119 chr2L 16597938 intron CG42389 + chr2L 16597998 intron CG42389 + chr2L 16598057 intron CG42389 + chr2L_6_16595001 chr2L_16595001 RAL-897 367 chr2L 16616604 16616612 chr2L 16616666 16616678 8 74 3.5 7.0 5.2 1.3 74 chr2L 16616604 intron CG42389 + chr2L 16616641 intron CG42389 + chr2L 16616678 intron CG42389 + chr2L_8_16615001 chr2L_16615001 RAL-897 368 chr2L 1663726 1663729 chr2L 16718579 16718601 4 15054863 24.0 32.0 28.0 0.1 15054875 chr2L 1663726 intron chinmo + chr2L 9191164 intron tai + chr2L 16718601 intron Cyt-c-d + chr2L_4_9190001 chr2L_9190001 RAL-897 369 chr2L 16721339 16721362 chr2L 16721428 16721450 9 88 4.5 3.0 3.8 1.9 111 chr2L 16721339 intron Cyt-c-p + chr2L 16721394 intron Cyt-c-p + chr2L 16721450 intron Cyt-c-p + chr2L_9_16720001 chr2L_16720001 RAL-897 370 chr2L 16873259 16873282 chr2L 16873343 16873366 10 84 3.5 1.5 2.5 2.9 107 chr2L 16873259 intron CR31781 + chr2L 16873312 intron CR31781 + chr2L 16873366 intron CR31781 + chr2L_10_16870001 chr2L_16870001 RAL-897 371 chr2L 16939997 16940012 chr2L 16940075 16940090 9 76 2.5 10.0 6.2 1.2 93 chr2L 16939997 intergenic not near genes chr2L 16940044 intergenic not near genes chr2L 16940090 intergenic not near genes chr2L_9_16940001 chr2L_16940001 RAL-897 372 chr2L 16944205 16944238 chr2L 16944292 16944318 7 86 1.0 5.0 3.0 1.8 113 chr2L 16944205 intergenic not near genes chr2L 16944262 intergenic CR43053 - chr2L 16944318 intergenic CR43053 - chr2L_7_16940001 chr2L_16940001 RAL-897 373 chr2L 16958105 16958135 chr2L 16962891 16962923 Doc 6 4787 3.5 4.0 3.8 1.2 4818 chr2L 16958105 intergenic not near genes chr2L 16960514 intergenic not near genes chr2L 16962923 intergenic not near genes chr2L_6_16960001 chr2L_16960001 RAL-897 374 chr2L 17101900 17101916 chr2L 17101977 17101991 5 76 8.0 4.0 6.0 0.7 91 chr2L 17101900 intergenic not near genes chr2L 17101946 intergenic not near genes chr2L 17101991 intergenic not near genes chr2L_5_17100001 chr2L_17100001 RAL-897 375 chr2L 17214997 17215007 chr2L 17215077 17215087 5 78 1.5 3.5 2.5 1.4 90 chr2L 17214997 intron beat-IIIc - chr2L 17215042 intron beat-IIIc - chr2L 17215087 intron beat-IIIc - chr2L_5_17215001 chr2L_17215001 RAL-897 376 chr2L 17238830 17238864 chr2L 17238915 17238949 6 85 2.0 2.0 2.0 2.0 119 chr2L 17238830 intron beat-IIIc - chr2L 17238890 intron beat-IIIc - chr2L 17238949 intron beat-IIIc - chr2L_6_17235001 chr2L_17235001 RAL-897 377 chr2L 17240570 17240583 chr2L 17240657 17240670 4 87 3.0 3.0 3.0 1.0 100 chr2L 17240570 intron beat-IIIc - chr2L 17240620 intron beat-IIIc - chr2L 17240670 intron beat-IIIc - chr2L_4_17240001 chr2L_17240001 RAL-897 378 chr2L 17273193 17273225 chr2L 17277974 17278008 F-element 25 4782 7.0 4.0 5.5 3.8 4815 chr2L 17273193 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278008 intergenic not near genes chr2L_25_17275001 chr2L_17275001 RAL-897 379 chr2L 17280996 17281032 chr2L 17281074 17281109 4 75 6.0 5.0 5.5 0.6 113 chr2L 17280996 intergenic CR45729 + chr2L 17281052 intergenic not near genes chr2L 17281109 intergenic not near genes chr2L_4_17280001 chr2L_17280001 RAL-897 380 chr2L 17296283 17296301 chr2L 17296367 17296385 4 81 4.0 6.5 5.2 0.6 102 chr2L 17296283 intergenic not near genes chr2L 17296334 intergenic not near genes chr2L 17296385 intergenic not near genes chr2L_4_17295001 chr2L_17295001 RAL-897 381 chr2L 17327911 17327928 chr2L 17327996 17328012 8 85 11.0 11.5 11.2 0.7 101 chr2L 17327911 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328012 intergenic not near genes chr2L_8_17325001 chr2L_17325001 RAL-897 382 chr2L 17543603 17543626 chr2L 17543696 17543719 7 89 2.0 7.0 4.5 1.3 116 chr2L 17543603 intergenic not near genes chr2L 17543661 intergenic not near genes chr2L 17543719 intergenic not near genes chr2L_7_17540001 chr2L_17540001 RAL-897 383 chr2L 17668713 17668738 chr2L 17668791 17668805 7 79 1.0 4.5 2.8 1.8 92 chr2L 17668713 intron CadN - chr2L 17668759 intron CadN - chr2L 17668805 intron CadN - chr2L_7_17665001 chr2L_17665001 RAL-897 384 chr2L 17687516 17687522 chr2L 17692261 17692267 F-element 4 4745 0.5 3.0 1.8 1.4 4751 chr2L 17687516 intron CadN - chr2L 17689892 intron CadN - chr2L 17692267 intron CadN - chr2L_4_17685001 chr2L_17685001 RAL-897 385 chr2L 17796029 17796044 chr2L 17796110 17796125 8 81 3.0 3.0 3.0 2.0 96 chr2L 17796029 intron CadN2 - chr2L 17796077 intron CadN2 - chr2L 17796125 intron CadN2 - chr2L_8_17795001 chr2L_17795001 RAL-897 386 chr2L 17819920 17819950 chr2L 17825123 17825153 copia 9 5203 2.0 4.0 3.0 2.2 5233 chr2L 17819920 intron CadN2 - chr2L 17822536 intron CadN2 - chr2L 17825153 intron CadN2 - chr2L_9_17820001 chr2L_17820001 RAL-897 387 chr2L 17880597 17880621 chr2L 17880709 17880732 5 110 1.0 5.5 3.2 1.2 135 chr2L 17880597 intergenic not near genes chr2L 17880664 intergenic not near genes chr2L 17880732 intergenic not near genes chr2L_5_17880001 chr2L_17880001 RAL-897 388 chr2L 17938687 17938715 chr2L 17938773 17938801 7 84 4.5 0.5 2.5 2.0 114 chr2L 17938687 intergenic CR44399 - chr2L 17938744 intergenic CR44399 - chr2L 17938801 intergenic CR44399 - chr2L_7_17935001 chr2L_17935001 RAL-897 389 chr2L 17943891 17943922 chr2L 17943994 17944025 6 103 3.0 5.0 4.0 1.2 134 chr2L 17943891 intergenic not near genes chr2L 17943958 intergenic not near genes chr2L 17944025 intergenic not near genes chr2L_6_17940001 chr2L_17940001 RAL-897 390 chr2L 18051875 18051909 chr2L 18061022 18061055 roo 11 9145 6.0 5.5 5.8 1.6 9180 chr2L 18051875 intron rdo + chr2L 18056465 intron rdo + chr2L 18061055 intron rdo + chr2L_11_18055001 chr2L_18055001 RAL-897 391 chr2L 18111243 18111264 chr2L 18111334 18111355 10 91 2.5 3.0 2.8 2.6 112 chr2L 18111243 intergenic not near genes chr2L 18111299 intergenic not near genes chr2L 18111355 intergenic not near genes chr2L_10_18110001 chr2L_18110001 RAL-897 392 chr2L 18199035 18199070 chr2L 18199116 18199151 8 80 2.5 2.0 2.2 2.5 116 chr2L 18199035 intron CG42750 - chr2L 18199093 intron CG42750 - chr2L 18199151 intron CG42750 - chr2L_8_18195001 chr2L_18195001 RAL-897 393 chr2L 18315250 18315281 chr2L 18315330 18315358 18 78 3.0 3.5 3.2 4.3 108 chr2L 18315250 intergenic not near genes chr2L 18315304 intergenic not near genes chr2L 18315358 intergenic not near genes chr2L_18_18315001 chr2L_18315001 RAL-897 394 chr2L 18393984 18394010 chr2L 18394063 18394090 12 79 7.5 8.0 7.8 1.4 106 chr2L 18393984 intergenic not near genes chr2L 18394037 intergenic not near genes chr2L 18394090 intergenic not near genes chr2L_12_18390001 chr2L_18390001 RAL-897 395 chr2L 18408025 18408045 chr2L 18412809 18412829 Doc 7 4784 6.0 0.0 3.0 1.8 4804 chr2L 18408025 intergenic not near genes chr2L 18410427 intergenic not near genes chr2L 18412829 intergenic not near genes chr2L_7_18410001 chr2L_18410001 RAL-897 396 chr2L 18462833 18462850 chr2L 18462909 18462926 9 76 4.5 4.5 4.5 1.6 93 chr2L 18462833 intron let-7-C + chr2L 18462880 intron let-7-C + chr2L 18462926 intron let-7-C + chr2L_9_18460001 chr2L_18460001 RAL-897 397 chr2L 18541741 18541756 chr2L 18541817 18541832 7 76 2.5 6.5 4.5 1.3 91 chr2L 18541741 intron Pde11 - chr2L 18541786 intron Pde11 - chr2L 18541832 intron Pde11 - chr2L_7_18540001 chr2L_18540001 RAL-897 398 chr2L 18561558 18561580 chr2L 18561659 18561681 7 101 3.0 1.5 2.2 2.2 123 chr2L 18561558 intron Pde11 - chr2L 18561620 intron Pde11 - chr2L 18561681 intron Pde11 - chr2L_7_18560001 chr2L_18560001 RAL-897 399 chr2L 18568317 18568327 chr2L 18568397 18568407 4 80 5.0 2.5 3.8 0.8 90 chr2L 18568317 intron Pde11 - chr2L 18568362 intron Pde11 - chr2L 18568407 intron Pde11 - chr2L_4_18565001 chr2L_18565001 RAL-897 400 chr2L 18570690 18570716 chr2L 18570785 18570811 16 95 5.0 8.0 6.5 2.1 121 chr2L 18570690 intron Pde11 - chr2L 18570750 intron Pde11 - chr2L 18570811 intron Pde11 - chr2L_16_18570001 chr2L_18570001 RAL-897 401 chr2L 18812557 18812590 chr2L 18812820 18812853 14 261 3.5 5.0 4.2 2.7 296 chr2L 18812557 intergenic CG17325 +,CG42305 + chr2L 18812705 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812853 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_14_18810001 chr2L_18810001 RAL-897 402 chr2L 18814885 18814912 chr2L 18814971 18814990 10 86 3.5 4.5 4.0 2.0 105 chr2L 18814885 intergenic not near genes chr2L 18814938 intergenic not near genes chr2L 18814990 intergenic not near genes chr2L_10_18810001 chr2L_18810001 RAL-897 403 chr2L 18883856 18883889 chr2L 18883934 18883951 9 79 6.0 6.5 6.2 1.2 95 chr2L 18883856 intergenic not near genes chr2L 18883904 intergenic not near genes chr2L 18883951 intergenic not near genes chr2L_9_18880001 chr2L_18880001 RAL-897 404 chr2L 18898399 18898428 chr2L 18898481 18898510 9 80 4.5 5.0 4.8 1.6 111 chr2L 18898399 intergenic not near genes chr2L 18898454 intergenic not near genes chr2L 18898510 intergenic not near genes chr2L_9_18895001 chr2L_18895001 RAL-897 405 chr2L 18926580 18926592 chr2L 18926687 18926699 9 106 1.5 5.0 3.2 2.1 119 chr2L 18926580 intron ssp3 - chr2L 18926640 intron ssp3 - chr2L 18926699 intron ssp3 - chr2L_9_18925001 chr2L_18925001 RAL-897 406 chr2L 19024096 19024097 chr2L 21768291 21768291 8 2744195 21.0 34.5 27.8 0.3 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_8_20395001 chr2L_20395001 RAL-897 407 chr2L 19147368 19147400 chr2L 19154403 19154435 297 20 7033 5.5 5.0 5.2 3.2 7067 chr2L 19147368 intron brat + chr2L 19150902 intron brat + chr2L 19154435 intron brat + chr2L_20_19150001 chr2L_19150001 RAL-897 408 chr2L 19155305 19155325 chr2L 19155742 19155761 9 436 4.0 5.5 4.8 1.6 456 chr2L 19155305 intron brat + chr2L 19155533 intron brat + chr2L 19155761 intron brat + chr2L_9_19155001 chr2L_19155001 RAL-897 409 chr2L 19199666 19199706 chr2L 19199743 19199783 17 72 8.0 6.5 7.2 2.1 117 chr2L 19199666 intron drl + chr2L 19199724 intron drl + chr2L 19199783 intron drl + chr2L_17_19195001 chr2L_19195001 RAL-897 410 chr2L 19220101 19220132 chr2L 19220221 19220252 16 118 12.0 5.0 8.5 1.7 151 chr2L 19220101 intergenic not near genes chr2L 19220176 intergenic not near genes chr2L 19220252 intergenic not near genes chr2L_16_19220001 chr2L_19220001 RAL-897 411 chr2L 19246836 19246851 chr2L 19246916 19246931 9 80 7.0 4.5 5.8 1.3 95 chr2L 19246836 intergenic not near genes chr2L 19246884 intergenic not near genes chr2L 19246931 intergenic not near genes chr2L_9_19245001 chr2L_19245001 RAL-897 412 chr2L 19331128 19331156 chr2L 19331230 19331258 9 101 3.5 6.5 5.0 1.5 130 chr2L 19331128 intergenic not near genes chr2L 19331193 intergenic not near genes chr2L 19331258 intergenic not near genes chr2L_9_19330001 chr2L_19330001 RAL-897 413 chr2L 19345012 19345036 chr2L 19357221 19357244 blood 8 12208 9.5 5.5 7.5 0.9 12232 chr2L 19345012 intron dnt - chr2L 19351128 intron dnt - chr2L 19357244 intron dnt - chr2L_8_19350001 chr2L_19350001 RAL-897 414 chr2L 19357545 19357565 chr2L 19357635 19357655 11 90 9.5 6.5 8.0 1.2 110 chr2L 19357545 intron dnt - chr2L 19357600 intron dnt - chr2L 19357655 intron dnt - chr2L_11_19355001 chr2L_19355001 RAL-897 415 chr2L 19372715 19372742 chr2L 19372797 19372813 6 80 3.5 2.0 2.8 1.6 98 chr2L 19372715 intergenic CG17349 + chr2L 19372764 intergenic CG17349 + chr2L 19372813 intergenic CG17349 + chr2L_6_19370001 chr2L_19370001 RAL-897 416 chr2L 19380506 19380529 chr2L 19380586 19380608 13 80 3.5 6.5 5.0 2.2 102 chr2L 19380506 intergenic CG17350 + chr2L 19380557 intergenic CG17350 + chr2L 19380608 intergenic CG17350 + chr2L_13_19380001 chr2L_19380001 RAL-897 417 chr2L 19441065 19441075 chr2L 19441142 19441152 8 77 6.5 5.0 5.8 1.2 87 chr2L 19441065 intron CG10237 - chr2L 19441108 intron CG10237 - chr2L 19441152 intron CG10237 - chr2L_8_19440001 chr2L_19440001 RAL-897 418 chr2L 19543127 19543158 chr2L 19543210 19543231 8 82 1.5 4.5 3.0 2.0 104 chr2L 19543127 intron ref(2)P + chr2L 19543179 intron ref(2)P + chr2L 19543231 intron ref(2)P + chr2L_8_19540001 chr2L_19540001 RAL-897 419 chr2L 19559181 19559214 chr2L 19559269 19559302 21 86 3.5 4.5 4.0 4.2 121 chr2L 19559181 exon Tep5 + chr2L 19559242 exon Tep5 + chr2L 19559302 exon Tep5 + chr2L_21_19555001 chr2L_19555001 RAL-897 420 chr2L 19562528 19562560 chr2L 19562608 19562640 17 78 6.0 4.0 5.0 2.8 112 chr2L 19562528 exon Tep5 + chr2L 19562584 intron Tep5 + chr2L 19562640 exon Tep5 + chr2L_17_19560001 chr2L_19560001 RAL-897 421 chr2L 19608607 19608611 chr2L 19608698 19608702 4 91 4.5 10.0 7.2 0.5 95 chr2L 19608607 intron Lar + chr2L 19608654 intron Lar + chr2L 19608702 intron Lar + chr2L_4_19605001 chr2L_19605001 RAL-897 422 chr2L 19620097 19620132 chr2L 19621080 19621121 jockey 15 986 6.0 8.5 7.2 1.8 1024 chr2L 19620097 intron Lar + chr2L 19620609 intron Lar + chr2L 19621121 intron Lar + chr2L_15_19620001 chr2L_19620001 RAL-897 423 chr2L 19638532 19638570 chr2L 19638620 19638657 19 86 5.0 2.5 3.8 4.0 125 chr2L 19638532 intron Lar + chr2L 19638594 intron Lar + chr2L 19638657 intron Lar + chr2L_19_19635001 chr2L_19635001 RAL-897 424 chr2L 19652568 19652601 chr2L 19674004 19674036 opus 7 21436 4.5 2.0 3.2 1.7 21468 chr2L 19652568 intron Lar + chr2L 19663302 intron Lar + chr2L 19674036 intron Lar + chr2L_7_19660001 chr2L_19660001 RAL-897 425 chr2L 19703535 19703568 chr2L 19712671 19712704 roo 15 9134 8.5 3.5 6.0 2.1 9169 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712704 intron Lar + chr2L_15_19705001 chr2L_19705001 RAL-897 426 chr2L 19737358 19737383 chr2L 19740827 19740852 1360 13 3467 4.0 5.0 4.5 2.4 3494 chr2L 19737358 intergenic Nf-YB + chr2L 19739105 intergenic not near genes chr2L 19740852 intergenic not near genes chr2L_13_19735001 chr2L_19735001 RAL-897 427 chr2L 19762807 19762838 chr2L 19763049 19763080 pogo 16 241 1.5 2.5 2.0 5.3 273 chr2L 19762807 5` UTR fbp - chr2L 19762944 intron fbp - chr2L 19763080 intron fbp - chr2L_16_19760001 chr2L_19760001 RAL-897 428 chr2L 19817537 19817558 chr2L 19817653 19817675 6 117 10.5 5.5 8.0 0.7 138 chr2L 19817537 intron sick + chr2L 19817606 intron sick + chr2L 19817675 intron sick + chr2L_6_19815001 chr2L_19815001 RAL-897 429 chr2L 19823265 19823293 chr2L 19823345 19823382 6 81 3.0 0.0 1.5 2.4 117 chr2L 19823265 intron sick + chr2L 19823324 intron sick + chr2L 19823382 intron sick + chr2L_6_19820001 chr2L_19820001 RAL-897 430 chr2L 19994654 19994672 chr2L 19994731 19994739 6 77 8.5 8.5 8.5 0.6 85 chr2L 19994654 intron CG43861 - chr2L 19994696 intron CG43861 - chr2L 19994739 intron CG43861 - chr2L_6_19990001 chr2L_19990001 RAL-897 431 chr2L 20000049 20000077 chr2L 20000136 20000163 17 87 4.0 3.5 3.8 3.5 114 chr2L 20000049 intron CG43861 - chr2L 20000106 intron CG43861 - chr2L 20000163 intron,3` UTR CG43861 -,CR44908 - chr2L_17_20000001 chr2L_20000001 RAL-897 432 chr2L 20005870 20005889 chr2L 20010946 20010963 flea 6 5075 4.0 3.0 3.5 1.3 5093 chr2L 20005870 intron CG43861 - chr2L 20008416 intron CG43861 - chr2L 20010963 intron CG43861 - chr2L_6_20005001 chr2L_20005001 RAL-897 433 chr2L 20041178 20041205 chr2L 20041323 20041350 8 145 0.5 3.5 2.0 2.7 172 chr2L 20041178 intron sNPF + chr2L 20041264 intron sNPF + chr2L 20041350 intron sNPF + chr2L_8_20040001 chr2L_20040001 RAL-897 434 chr2L 20236513 20236526 chr2L 20236589 20236602 4 76 5.0 0.0 2.5 1.1 89 chr2L 20236513 intergenic not near genes chr2L 20236558 intergenic not near genes chr2L 20236602 intergenic not near genes chr2L_4_20235001 chr2L_20235001 RAL-897 435 chr2L 20296506 20296538 chr2L 20296587 20296619 13 80 1.5 4.0 2.8 3.4 113 chr2L 20296506 intergenic CR43414 - chr2L 20296562 intergenic CR43414 - chr2L 20296619 intergenic CR43414 - chr2L_13_20295001 chr2L_20295001 RAL-897 436 chr2L 20299414 20299444 chr2L 20299536 20299550 15 120 0.0 8.0 4.0 3.0 136 chr2L 20299414 intergenic not near genes chr2L 20299482 intergenic not near genes chr2L 20299550 intergenic not near genes chr2L_15_20295001 chr2L_20295001 RAL-897 437 chr2L 20300007 20300020 chr2L 20300095 20300105 4 87 11.5 7.0 9.2 0.4 98 chr2L 20300007 intergenic not near genes chr2L 20300056 intergenic not near genes chr2L 20300105 intergenic not near genes chr2L_4_20300001 chr2L_20300001 RAL-897 438 chr2L 20303168 20303193 chr2L 20310636 20310661 blood 4 7468 0.5 4.0 2.2 1.2 7493 chr2L 20303168 intergenic not near genes chr2L 20306914 intergenic not near genes chr2L 20310661 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-897 439 chr2L 20326576 20326604 chr2L 20326657 20326690 15 84 4.5 3.5 4.0 3.0 114 chr2L 20326576 intron spir + chr2L 20326633 intron spir + chr2L 20326690 intron spir + chr2L_15_20325001 chr2L_20325001 RAL-897 440 chr2L 20393787 20393817 chr2L 20393950 20393981 13 162 4.0 5.5 4.8 2.2 194 chr2L 20393787 intron CG10947 - chr2L 20393884 intron CG10947 - chr2L 20393981 intron CG10947 - chr2L_13_20390001 chr2L_20390001 RAL-897 441 chr2L 20498688 20498704 chr2L 20498787 20498803 9 98 3.5 7.0 5.2 1.5 115 chr2L 20498688 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498803 intergenic not near genes chr2L_9_20495001 chr2L_20495001 RAL-897 442 chr2L 20516525 20516530 chr2L 20516596 20516606 5 79 2.0 7.5 4.8 0.9 81 chr2L 20516525 intergenic not near genes chr2L 20516566 intergenic not near genes chr2L 20516606 intergenic not near genes chr2L_5_20515001 chr2L_20515001 RAL-897 443 chr2L 20571576 20571602 chr2L 20571652 20571679 6 74 2.5 1.0 1.8 2.1 103 chr2L 20571576 intron CR45347 + chr2L 20571628 intron CR45347 + chr2L 20571679 intron CR45347 + chr2L_6_20570001 chr2L_20570001 RAL-897 444 chr2L 20576218 20576251 chr2L 20583685 20583719 blood 14 7464 4.5 6.0 5.2 2.3 7501 chr2L 20576218 intergenic CR45347 + chr2L 20579968 intergenic not near genes chr2L 20583719 3` UTR CR44909 - chr2L_14_20575001 chr2L_20575001 RAL-897 445 chr2L 20611247 20611260 chr2L 20611322 20611348 6 80 0.0 5.5 2.8 1.6 101 chr2L 20611247 intron CR44909 - chr2L 20611298 intron CR44909 - chr2L 20611348 intron CR44909 - chr2L_6_20610001 chr2L_20610001 RAL-897 446 chr2L 20623921 20623932 chr2L 20624000 20624012 8 80 5.5 5.5 5.5 1.2 91 chr2L 20623921 intron CR44909 - chr2L 20623966 intron CR44909 - chr2L 20624012 intron CR44909 - chr2L_8_20620001 chr2L_20620001 RAL-897 447 chr2L 20623939 20623943 chr2L 20623998 20624014 4 71 1.5 5.5 3.5 0.9 75 chr2L 20623939 intron CR44909 - chr2L 20623976 intron CR44909 - chr2L 20624014 intron CR44909 - chr2L_4_20620001 chr2L_20620001 RAL-897 448 chr2L 20639512 20639531 chr2L 20639788 20639807 INE-1 7 274 2.5 8.5 5.5 1.1 295 chr2L 20639512 intergenic not near genes chr2L 20639660 intergenic CG31680 + chr2L 20639807 intergenic CG31680 + chr2L_7_20635001 chr2L_20635001 RAL-897 449 chr2L 20805407 20805440 chr2L 20805753 20805786 7 346 3.5 1.5 2.5 2.0 379 chr2L 20805407 intron CG9328 + chr2L 20805596 intron CG9328 + chr2L 20805786 intron CG9328 + chr2L_7_20805001 chr2L_20805001 RAL-897 450 chr2L 20819113 20819143 chr2L 20819197 20819226 10 83 2.5 3.0 2.8 2.6 113 chr2L 20819113 intergenic not near genes chr2L 20819170 intergenic not near genes chr2L 20819226 intergenic not near genes chr2L_10_20815001 chr2L_20815001 RAL-897 451 chr2L 20821504 20821520 chr2L 20821652 20821668 9 148 3.5 7.0 5.2 1.5 164 chr2L 20821504 intergenic not near genes chr2L 20821586 intergenic not near genes chr2L 20821668 intergenic not near genes chr2L_9_20820001 chr2L_20820001 RAL-897 452 chr2L 20840030 20840057 chr2L 20840242 20840268 13 210 5.0 6.0 5.5 2.0 238 chr2L 20840030 intergenic not near genes chr2L 20840149 intergenic not near genes chr2L 20840268 intergenic CG31676 + chr2L_13_20840001 chr2L_20840001 RAL-897 453 chr2L 20901470 20901486 chr2L 20902633 20902647 1360 10 1162 1.5 2.5 2.0 3.3 1177 chr2L 20901470 intron,intron CG43739 -,sky - chr2L 20902058 intron,intron CG43739 -,sky - chr2L 20902647 intron,intron CG43739 -,sky - chr2L_10_20900001 chr2L_20900001 RAL-897 454 chr2L 20967933 20967950 chr2L 20968026 20968043 10 91 4.0 5.5 4.8 1.7 110 chr2L 20967933 intron CG42238 - chr2L 20967988 intron CG42238 - chr2L 20968043 intron CG42238 - chr2L_10_20965001 chr2L_20965001 RAL-897 455 chr2L 20967952 20967958 chr2L 20968021 20968034 6 85 2.0 2.0 2.0 2.0 82 chr2L 20967952 intron CG42238 - chr2L 20967993 intron CG42238 - chr2L 20968034 intron CG42238 - chr2L_6_20965001 chr2L_20965001 RAL-897 456 chr2L 20976643 20976681 chr2L 20981458 20981496 X-element 12 4815 3.5 5.0 4.2 2.3 4853 chr2L 20976643 intron CG42238 - chr2L 20979070 intron CG42238 - chr2L 20981496 intron CG42238 - chr2L_12_20975001 chr2L_20975001 RAL-897 457 chr2L 20984608 20984640 chr2L 20984689 20984721 16 80 4.0 4.0 4.0 3.2 113 chr2L 20984608 intron CG42238 - chr2L 20984664 intron CG42238 - chr2L 20984721 intron CG42238 - chr2L_16_20980001 chr2L_20980001 RAL-897 458 chr2L 21020277 21020311 chr2L 21023954 21023988 NOF 14 3675 3.0 4.5 3.8 2.9 3711 chr2L 21020277 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21023988 intron CG42238 - chr2L_14_21020001 chr2L_21020001 RAL-897 459 chr2L 21041133 21041166 chr2L 21049394 21049427 Tirant 15 8259 2.5 2.0 2.2 4.7 8294 chr2L 21041133 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049427 intron CG42238 - chr2L_15_21045001 chr2L_21045001 RAL-897 460 chr2L 21119281 21119312 chr2L 21119365 21119396 8 82 6.0 2.0 4.0 1.6 115 chr2L 21119281 intron Nhe2 + chr2L 21119338 intron Nhe2 + chr2L 21119396 intron Nhe2 + chr2L_8_21115001 chr2L_21115001 RAL-897 461 chr2L 21196180 21196196 chr2L 21196300 21196322 8 122 3.0 4.5 3.8 1.7 142 chr2L 21196180 intron Ret - chr2L 21196251 intron Ret - chr2L 21196322 intron Ret - chr2L_8_21195001 chr2L_21195001 RAL-897 462 chr2L 21284054 21284085 chr2L 21284526 21284558 16 472 4.5 6.5 5.5 2.5 504 chr2L 21284054 intergenic not near genes chr2L 21284306 intergenic not near genes chr2L 21284558 intergenic not near genes chr2L_16_21280001 chr2L_21280001 RAL-897 463 chr2L 21285635 21285670 chr2L 21285730 21285750 15 90 6.0 3.5 4.8 2.6 115 chr2L 21285635 intergenic Mio - chr2L 21285692 intergenic Mio - chr2L 21285750 intergenic Mio - chr2L_15_21285001 chr2L_21285001 RAL-897 464 chr2L 21286608 21286634 chr2L 21286686 21286712 11 77 3.5 4.0 3.8 2.3 104 chr2L 21286608 exon Mio - chr2L 21286660 intron Mio - chr2L 21286712 intron Mio - chr2L_11_21285001 chr2L_21285001 RAL-897 465 chr2L 21307474 21307497 chr2L 21307556 21307572 4 80 4.0 2.5 3.2 1.0 98 chr2L 21307474 intron Mio - chr2L 21307523 intron Mio - chr2L 21307572 intron Mio - chr2L_4_21305001 chr2L_21305001 RAL-897 466 chr2L 21381196 21381224 chr2L 21381299 21381327 6 100 4.5 2.0 3.2 1.4 131 chr2L 21381196 intron nrv3 + chr2L 21381262 intron nrv3 + chr2L 21381327 intron nrv3 + chr2L_6_21380001 chr2L_21380001 RAL-897 467 chr2L 21396595 21396620 chr2L 21396830 21396855 9 233 5.5 6.0 5.8 1.3 260 chr2L 21396595 intergenic not near genes chr2L 21396725 intergenic not near genes chr2L 21396855 intergenic not near genes chr2L_9_21395001 chr2L_21395001 RAL-897 468 chr2L 21597029 21597058 chr2L 21604772 21604802 roo 5 7742 2.0 3.0 2.5 1.4 7773 chr2L 21597029 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604802 intergenic not near genes chr2L_5_21600001 chr2L_21600001 RAL-897 469 chr2L 21743753 21743763 chr2L 21743830 21743840 4 77 6.0 2.5 4.2 0.8 87 chr2L 21743753 intron step - chr2L 21743796 intron step - chr2L 21743840 exon step - chr2L_4_21740001 chr2L_21740001 RAL-897 470 chr2L 21744691 21744714 chr2L 21744777 21744801 10 86 2.5 1.0 1.8 3.6 110 chr2L 21744691 intron step - chr2L 21744746 intron step - chr2L 21744801 intron step - chr2L_10_21740001 chr2L_21740001 RAL-897 471 chr2L 21766644 21766674 chr2L 21766731 21766761 11 86 5.5 5.5 5.5 1.7 117 chr2L 21766644 intron CG31612 - chr2L 21766702 intron CG31612 - chr2L 21766761 intron CG31612 - chr2L_11_21765001 chr2L_21765001 RAL-897 472 chr2L 21819329 21819361 chr2L 21819417 21819448 7 85 3.0 5.0 4.0 1.4 119 chr2L 21819329 intergenic CR44786 + chr2L 21819388 intergenic CR44786 + chr2L 21819448 intergenic CR44786 + chr2L_7_21815001 chr2L_21815001 RAL-897 473 chr2L 21963782 21963808 chr2L 21963852 21963886 8 76 2.5 4.0 3.2 1.9 104 chr2L 21963782 intergenic not near genes chr2L 21963834 intergenic not near genes chr2L 21963886 intergenic not near genes chr2L_8_21960001 chr2L_21960001 RAL-897 474 chr2L 21981683 21981715 chr2L 21990848 21990878 roo 11 9164 2.5 5.0 3.8 2.3 9195 chr2L 21981683 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990878 exon CG2528 - chr2L_11_21985001 chr2L_21985001 RAL-897 475 chr2L 22011919 22011943 chr2L 22012000 22012024 9 81 5.0 5.0 5.0 1.5 105 chr2L 22011919 intergenic not near genes chr2L 22011972 intergenic not near genes chr2L 22012024 intergenic not near genes chr2L_9_22010001 chr2L_22010001 RAL-897 476 chr2L 22191878 22192057 chr2L 22191966 22192146 7 86 3.0 20.0 11.5 0.6 268 chr2L 22191878 intron Ir40a - chr2L 22192012 intron Ir40a - chr2L 22192146 intron Ir40a - chr2L_7_22190001 chr2L_22190001 RAL-897 477 chr2L 22192214 22192248 chr2L 22192608 22192640 20 389 4.0 2.5 3.2 4.8 426 chr2L 22192214 intron Ir40a - chr2L 22192427 intron Ir40a - chr2L 22192640 intron Ir40a - chr2L_20_22190001 chr2L_22190001 RAL-897 478 chr2L 22197889 22197909 chr2L 22198088 22198108 4 197 1.5 1.5 1.5 1.6 219 chr2L 22197889 intron Ir40a - chr2L 22197998 intron Ir40a - chr2L 22198108 intron Ir40a - chr2L_4_22195001 chr2L_22195001 RAL-897 479 chr2L 22545977 22546011 chr2L 22546073 22546106 15 94 5.5 2.5 4.0 3.0 129 chr2L 22545977 intron CG17490 + chr2L 22546042 intron CG17490 + chr2L 22546106 intron CG17490 + chr2L_15_22545001 chr2L_22545001 RAL-897 480 chr2L 22548936 22548944 chr2L 22550139 22550169 1360 4 1220 0.5 5.0 2.8 1.1 1233 chr2L 22548936 intergenic CG17490 + chr2L 22549552 intergenic not near genes chr2L 22550169 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-897 481 chr2L 22679802 22679813 chr2L 22684573 22684585 F-element 6 4770 5.0 6.5 5.8 0.9 4783 chr2L 22679802 intron CG40006 - chr2L 22682194 intron CG40006 - chr2L 22684585 intron CG40006 - chr2L_6_22680001 chr2L_22680001 RAL-897 482 chr2L 22679815 22679826 chr2L 22684565 22684596 F-element 7 4764 3.5 4.5 4.0 1.4 4781 chr2L 22679815 intron CG40006 - chr2L 22682206 intron CG40006 - chr2L 22684596 intron CG40006 - chr2L_7_22680001 chr2L_22680001 RAL-897 483 chr2L 22693918 22693951 chr2L 22694004 22694038 15 85 5.0 4.0 4.5 2.7 120 chr2L 22693918 intron CG40006 - chr2L 22693978 intron CG40006 - chr2L 22694038 intron CG40006 - chr2L_15_22690001 chr2L_22690001 RAL-897 484 chr2L 22983943 22983973 chr2L 22984019 22984038 6 74 2.5 4.5 3.5 1.3 95 chr2L 22983943 intron cta + chr2L 22983990 intron cta + chr2L 22984038 intron cta + chr2L_6_22980001 chr2L_22980001 RAL-897 485 chr2L 23241845 23241851 chr2L 23241925 23241929 4 79 14.0 3.5 8.8 0.4 84 chr2L 23241845 intergenic not near genes chr2L 23241887 intergenic not near genes chr2L 23241929 intergenic not near genes chr2L_4_23240001 chr2L_23240001 RAL-897 486 chr2R 469954 469981 chr2R 473195 473222 F-element 5 3241 1.5 2.5 2.0 1.7 3268 chr2R 469954 intergenic not near genes chr2R 471588 intergenic not near genes chr2R 473222 intergenic not near genes chr2R_5_470001 chr2R_470001 RAL-897 487 chr2R 529322 529339 chr2R 537946 537964 Max-element 7 8624 3.0 6.0 4.5 1.3 8642 chr2R 529322 intron CG40378 + chr2R 533643 intron CG40378 + chr2R 537964 intron CG40378 + chr2R_7_530001 chr2R_530001 RAL-897 488 chr2R 552777 552782 chr2R 553976 553988 1360 5 1208 6.5 6.0 6.2 0.7 1211 chr2R 552777 intron CG40378 + chr2R 553382 intron CG40378 + chr2R 553988 intron CG40378 + chr2R_5_550001 chr2R_550001 RAL-897 489 chr2R 1082368 1082385 chr2R 1087126 1087151 Doc 12 4770 12.0 3.0 7.5 1.4 4783 chr2R 1082368 intron rl + chr2R 1084760 intron rl + chr2R 1087151 intron rl + chr2R_12_1080001 chr2R_1080001 RAL-897 490 chr2R 1365865 1365896 chr2R 1365977 1366008 18 111 4.0 3.0 3.5 4.0 143 chr2R 1365865 intron l(2)41Ab + chr2R 1365936 intron l(2)41Ab + chr2R 1366008 intron l(2)41Ab + chr2R_18_1365001 chr2R_1365001 RAL-897 491 chr2R 2015136 2015151 chr2R 2015213 2015228 7 77 2.5 2.5 2.5 2.0 92 chr2R 2015136 intron CG17684 - chr2R 2015182 intron CG17684 - chr2R 2015228 intron CG17684 - chr2R_7_2015001 chr2R_2015001 RAL-897 492 chr2R 2498992 2499015 chr2R 2508129 2508159 roo 11 9144 2.5 3.0 2.8 2.9 9167 chr2R 2498992 intron MFS17 - chr2R 2503576 intron MFS17 - chr2R 2508159 intron MFS17 - chr2R_11_2500001 chr2R_2500001 RAL-897 493 chr2R 2508308 2508340 chr2R 2508446 2508478 8 138 1.5 5.5 3.5 1.8 170 chr2R 2508308 intron MFS17 - chr2R 2508393 intron MFS17 - chr2R 2508478 intron MFS17 - chr2R_8_2505001 chr2R_2505001 RAL-897 494 chr2R 3144092 3144109 chr2R 3393370 3393387 Doc 6 249277 14.5 7.0 10.8 0.5 249295 chr2R 3144092 intron CG42596 + chr2R 3268740 intergenic not near genes chr2R 3393387 intergenic not near genes chr2R_6_3265001 chr2R_3265001 RAL-897 495 chr2R 3291928 3291958 chr2R 3915097 3915126 5 623169 19.5 30.0 24.8 0.2 623198 chr2R 3291928 intergenic not near genes chr2R 3603527 intergenic not near genes chr2R 3915126 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-897 496 chr2R 3293744 3293773 chr2R 3293822 3293850 5 78 1.5 6.5 4.0 1.0 106 chr2R 3293744 intergenic not near genes chr2R 3293797 intergenic not near genes chr2R 3293850 intergenic not near genes chr2R_5_3290001 chr2R_3290001 RAL-897 497 chr2R 3818933 3818942 chr2R 3819049 3819058 10 116 18.0 3.5 10.8 0.8 125 chr2R 3818933 intergenic not near genes chr2R 3818996 intergenic not near genes chr2R 3819058 intergenic not near genes chr2R_10_3815001 chr2R_3815001 RAL-897 498 chr2R 4312955 4312987 chr2R 4313038 4313071 10 84 3.5 5.0 4.2 1.9 116 chr2R 4312955 intergenic not near genes chr2R 4313013 intergenic not near genes chr2R 4313071 intergenic not near genes chr2R_10_4310001 chr2R_4310001 RAL-897 499 chr2R 4603348 4603373 chr2R 4603429 4603430 13 78 2.5 9.0 5.8 1.9 82 chr2R 4603348 intron p120ctn + chr2R 4603389 intron p120ctn + chr2R 4603430 intron p120ctn + chr2R_13_4600001 chr2R_4600001 RAL-897 500 chr2R 4624360 4624380 chr2R 4624480 4624500 12 120 8.0 5.0 6.5 1.6 140 chr2R 4624360 intergenic not near genes chr2R 4624430 intergenic not near genes chr2R 4624500 intergenic not near genes chr2R_12_4620001 chr2R_4620001 RAL-897 501 chr2R 4634154 4634186 chr2R 4634233 4634237 14 74 1.0 8.0 4.5 2.5 83 chr2R 4634154 intergenic not near genes chr2R 4634196 intergenic not near genes chr2R 4634237 intergenic not near genes chr2R_14_4630001 chr2R_4630001 RAL-897 502 chr2R 4702480 4702501 chr2R 4702617 4702639 4 138 4.0 5.5 4.8 0.7 159 chr2R 4702480 intron Nipped-B - chr2R 4702560 intron Nipped-B - chr2R 4702639 intron Nipped-B - chr2R_4_4700001 chr2R_4700001 RAL-897 503 chr2R 4906137 4906158 chr2R 4906446 4906457 6 305 1.5 1.5 1.5 2.4 320 chr2R 4906137 intron CG44102 - chr2R 4906297 intron CG44102 - chr2R 4906457 intron CG44102 - chr2R_6_4905001 chr2R_4905001 RAL-897 504 chr2R 4932567 4932591 chr2R 4933008 4933013 5 436 33.5 20.5 27.0 0.2 446 chr2R 4932567 intron Ir41a + chr2R 4932790 intron Ir41a + chr2R 4933013 intron Ir41a + chr2R_5_4930001 chr2R_4930001 RAL-897 505 chr2R 4933360 4933391 chr2R 4933924 4933952 19 558 3.0 6.0 4.5 3.5 592 chr2R 4933360 intron Ir41a + chr2R 4933656 intron Ir41a + chr2R 4933952 intron Ir41a + chr2R_19_4930001 chr2R_4930001 RAL-897 506 chr2R 4940960 4940982 chr2R 4943410 4943422 11 2449 16.5 26.0 21.2 0.5 2462 chr2R 4940960 intron Ir41a + chr2R 4942191 intron Ir41a + chr2R 4943422 intron Ir41a + chr2R_11_4940001 chr2R_4940001 RAL-897 507 chr2R 5009141 5009158 chr2R 5009382 5009388 5 237 9.5 3.0 6.2 0.7 247 chr2R 5009141 intron Ir41a + chr2R 5009264 intron Ir41a + chr2R 5009388 intron Ir41a + chr2R_5_5005001 chr2R_5005001 RAL-897 508 chr2R 5019279 5019310 chr2R 5019361 5019396 6 85 4.0 3.0 3.5 1.3 117 chr2R 5019279 intron Ir41a + chr2R 5019338 intron Ir41a + chr2R 5019396 intron Ir41a + chr2R_6_5015001 chr2R_5015001 RAL-897 509 chr2R 5038528 5038537 chr2R 5039325 5039334 5 797 5.0 4.0 4.5 0.9 806 chr2R 5038528 intergenic not near genes chr2R 5038931 intergenic not near genes chr2R 5039334 intergenic not near genes chr2R_5_5035001 chr2R_5035001 RAL-897 510 chr2R 5040753 5040761 chr2R 5041242 5041249 5 489 1.0 1.5 1.2 2.3 496 chr2R 5040753 intergenic not near genes chr2R 5041001 intergenic not near genes chr2R 5041249 intergenic not near genes chr2R_5_5040001 chr2R_5040001 RAL-897 511 chr2R 5080792 5080809 chr2R 5080883 5080900 8 91 2.0 4.0 3.0 2.0 108 chr2R 5080792 intergenic not near genes chr2R 5080846 intergenic not near genes chr2R 5080900 intergenic not near genes chr2R_8_5080001 chr2R_5080001 RAL-897 512 chr2R 5080810 5080816 chr2R 5080876 5080907 7 86 2.0 3.5 2.8 1.8 97 chr2R 5080810 intergenic not near genes chr2R 5080858 intergenic not near genes chr2R 5080907 intergenic not near genes chr2R_7_5080001 chr2R_5080001 RAL-897 513 chr2R 5087189 5087212 chr2R 5087286 5087315 17 99 5.5 12.0 8.8 1.7 126 chr2R 5087189 intergenic not near genes chr2R 5087252 intergenic not near genes chr2R 5087315 intergenic not near genes chr2R_17_5085001 chr2R_5085001 RAL-897 514 chr2R 5192726 5192732 chr2R 5192803 5192808 4 76 3.5 3.0 3.2 1.0 82 chr2R 5192726 intron Nipped-A - chr2R 5192767 intron Nipped-A - chr2R 5192808 intron Nipped-A - chr2R_4_5190001 chr2R_5190001 RAL-897 515 chr2R 5237351 5237368 chr2R 5237431 5237450 9 81 1.5 0.0 0.8 5.0 99 chr2R 5237351 intron Nipped-A - chr2R 5237400 intron Nipped-A - chr2R 5237450 intron Nipped-A - chr2R_9_5235001 chr2R_5235001 RAL-897 516 chr2R 5303490 5303519 chr2R 5303576 5303607 6 88 2.0 2.5 2.2 1.9 117 chr2R 5303490 intergenic not near genes chr2R 5303548 intergenic not near genes chr2R 5303607 intergenic not near genes chr2R_6_5300001 chr2R_5300001 RAL-897 517 chr2R 5363490 5363512 chr2R 5363568 5363590 7 76 4.5 3.0 3.8 1.5 100 chr2R 5363490 5` UTR CR42646 + chr2R 5363540 intron CR42646 + chr2R 5363590 intron CR42646 + chr2R_7_5360001 chr2R_5360001 RAL-897 518 chr2R 5396260 5396290 chr2R 5396498 5396527 8 233 26.0 25.0 25.5 0.3 267 chr2R 5396260 intergenic not near genes chr2R 5396394 intergenic not near genes chr2R 5396527 intergenic not near genes chr2R_8_5395001 chr2R_5395001 RAL-897 519 chr2R 5418004 5418023 chr2R 5420636 5420644 Burdock 4 2629 1.5 3.5 2.5 1.1 2640 chr2R 5418004 intron laccase2 + chr2R 5419324 intron laccase2 + chr2R 5420644 intron laccase2 + chr2R_4_5415001 chr2R_5415001 RAL-897 520 chr2R 5472368 5472390 chr2R 5472461 5472481 12 91 6.0 6.5 6.2 1.7 113 chr2R 5472368 intron CG30440 - chr2R 5472424 intron CG30440 - chr2R 5472481 intron CG30440 - chr2R_12_5470001 chr2R_5470001 RAL-897 521 chr2R 5473370 5473391 chr2R 5473465 5473486 6 95 4.5 8.5 6.5 0.8 116 chr2R 5473370 intron CG30440 - chr2R 5473428 intron CG30440 - chr2R 5473486 intron CG30440 - chr2R_6_5470001 chr2R_5470001 RAL-897 522 chr2R 5581398 5581410 chr2R 5627607 5627619 6 46209 18.0 7.5 12.8 0.4 46221 chr2R 5581398 intergenic not near genes chr2R 5604508 exon Fis1 - chr2R 5627619 intergenic not near genes chr2R_6_5600001 chr2R_5600001 RAL-897 523 chr2R 5621374 5621391 chr2R 5621451 5621470 4 76 6.5 4.0 5.2 0.6 96 chr2R 5621374 intergenic not near genes chr2R 5621422 intergenic not near genes chr2R 5621470 intergenic not near genes chr2R_4_5620001 chr2R_5620001 RAL-897 524 chr2R 5701752 5701779 chr2R 5701832 5701859 10 78 2.0 3.0 2.5 2.9 107 chr2R 5701752 intergenic vlc + chr2R 5701806 intergenic vlc + chr2R 5701859 intergenic vlc + chr2R_10_5700001 chr2R_5700001 RAL-897 525 chr2R 5743875 5743899 chr2R 5744761 5744786 INE-1 7 886 13.0 12.5 12.8 0.5 911 chr2R 5743875 intergenic not near genes chr2R 5744330 intergenic not near genes chr2R 5744786 intergenic not near genes chr2R_7_5740001 chr2R_5740001 RAL-897 526 chr2R 5794233 5794262 chr2R 5794361 5794388 18 126 6.0 3.5 4.8 3.1 155 chr2R 5794233 intergenic not near genes chr2R 5794310 intergenic not near genes chr2R 5794388 intergenic not near genes chr2R_18_5790001 chr2R_5790001 RAL-897 527 chr2R 5833356 5833356 chr2R 11463556 11463556 4 5630200 25.0 10.0 17.5 0.2 5630200 chr2R 5833356 intron dpr12 + chr2R 8648456 intergenic not near genes chr2R 11463556 3` UTR E(Pc) + chr2R_4_8645001 chr2R_8645001 RAL-897 528 chr2R 5861294 5861305 chr2R 5861412 5861425 6 117 8.0 10.5 9.2 0.6 131 chr2R 5861294 intergenic dpr12 + chr2R 5861360 intergenic not near genes chr2R 5861425 intergenic not near genes chr2R_6_5860001 chr2R_5860001 RAL-897 529 chr2R 5861306 5861319 chr2R 5861407 5861439 7 116 4.5 8.5 6.5 0.9 133 chr2R 5861306 intergenic dpr12 + chr2R 5861372 intergenic not near genes chr2R 5861439 intergenic not near genes chr2R_7_5860001 chr2R_5860001 RAL-897 530 chr2R 5869293 5869308 chr2R 5874357 5874384 flea 5 5073 2.5 5.5 4.0 1.0 5091 chr2R 5869293 intergenic not near genes chr2R 5871838 intergenic not near genes chr2R 5874384 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-897 531 chr2R 5878923 5878959 chr2R 5879003 5879039 12 78 1.0 1.5 1.2 5.5 116 chr2R 5878923 intergenic CG44438 - chr2R 5878981 intergenic CG44438 - chr2R 5879039 intergenic CG44438 - chr2R_12_5875001 chr2R_5875001 RAL-897 532 chr2R 5888502 5888528 chr2R 5888605 5888616 7 100 4.5 5.5 5.0 1.2 114 chr2R 5888502 intergenic not near genes chr2R 5888559 intergenic not near genes chr2R 5888616 intergenic not near genes chr2R_7_5885001 chr2R_5885001 RAL-897 533 chr2R 5902182 5902185 chr2R 5909740 5909744 17.6 5 7558 1.0 2.0 1.5 2.0 7562 chr2R 5902182 intron CG43366 + chr2R 5905963 intron CG43366 + chr2R 5909744 intron CG43366 + chr2R_5_5905001 chr2R_5905001 RAL-897 534 chr2R 5985646 5985669 chr2R 5985789 5985823 8 154 2.5 5.0 3.8 1.7 177 chr2R 5985646 intron Src42A + chr2R 5985734 intron Src42A + chr2R 5985823 intron Src42A + chr2R_8_5985001 chr2R_5985001 RAL-897 535 chr2R 6053057 6053083 chr2R 6053136 6053170 12 85 2.5 8.0 5.2 1.9 113 chr2R 6053057 intron CCHa2-R + chr2R 6053114 intron CCHa2-R + chr2R 6053170 intron CCHa2-R + chr2R_12_6050001 chr2R_6050001 RAL-897 536 chr2R 6060700 6060725 chr2R 6061022 6061050 12 323 6.0 6.0 6.0 1.7 350 chr2R 6060700 intron CCHa2-R + chr2R 6060875 intron CCHa2-R + chr2R 6061050 intron CCHa2-R + chr2R_12_6060001 chr2R_6060001 RAL-897 537 chr2R 6096715 6096751 chr2R 6101910 6101949 BS 16 5194 10.0 4.0 7.0 2.0 5234 chr2R 6096715 intron EcR - chr2R 6099332 intron EcR - chr2R 6101949 intron EcR - chr2R_16_6095001 chr2R_6095001 RAL-897 538 chr2R 6142667 6142678 chr2R 6142754 6142761 6 85 14.5 6.5 10.5 0.5 94 chr2R 6142667 intron EcR - chr2R 6142714 intron EcR - chr2R 6142761 intron EcR - chr2R_6_6140001 chr2R_6140001 RAL-897 539 chr2R 6142681 6142694 chr2R 6142753 6142781 5 80 8.0 6.5 7.2 0.6 100 chr2R 6142681 intron EcR - chr2R 6142731 intron EcR - chr2R 6142781 intron EcR - chr2R_5_6140001 chr2R_6140001 RAL-897 540 chr2R 6173550 6173577 chr2R 6173628 6173646 7 72 1.5 5.0 3.2 1.7 96 chr2R 6173550 intergenic Cyp6w1 + chr2R 6173598 intergenic Cyp6w1 + chr2R 6173646 intergenic Cyp6w1 + chr2R_7_6170001 chr2R_6170001 RAL-897 541 chr2R 6230960 6230987 chr2R 6231048 6231075 14 84 7.0 6.0 6.5 1.9 115 chr2R 6230960 intron bin3 + chr2R 6231018 intron bin3 + chr2R 6231075 intron bin3 + chr2R_14_6230001 chr2R_6230001 RAL-897 542 chr2R 6231573 6231609 chr2R 6231656 6231673 8 80 2.5 1.5 2.0 2.7 100 chr2R 6231573 intron bin3 + chr2R 6231623 intron bin3 + chr2R 6231673 intron bin3 + chr2R_8_6230001 chr2R_6230001 RAL-897 543 chr2R 6529815 6529851 chr2R 6529920 6529956 18 100 3.5 4.5 4.0 3.6 141 chr2R 6529815 intron jing + chr2R 6529886 intron jing + chr2R 6529956 intron jing + chr2R_18_6525001 chr2R_6525001 RAL-897 544 chr2R 6886551 6886572 chr2R 6886764 6886789 13 213 7.0 8.5 7.8 1.5 238 chr2R 6886551 5` UTR Spn42De + chr2R 6886670 exon Spn42De + chr2R 6886789 exon Spn42De + chr2R_13_6885001 chr2R_6885001 RAL-897 545 chr2R 6948083 6948109 chr2R 6948159 6948185 11 76 2.0 3.0 2.5 3.1 102 chr2R 6948083 intron,intron mim -,CheB42c - chr2R 6948134 intron,intron mim -,CheB42c - chr2R 6948185 intron,intron mim -,CheB42c - chr2R_11_6945001 chr2R_6945001 RAL-897 546 chr2R 6952167 6952180 chr2R 6959747 6959760 opus 4 7580 3.5 2.0 2.8 1.1 7593 chr2R 6952167 intron,intron mim -,CheB42c - chr2R 6955964 intron,intron mim -,CheB42c - chr2R 6959760 intron,intron mim -,CheB42c - chr2R_4_6955001 chr2R_6955001 RAL-897 547 chr2R 7019099 7019122 chr2R 7021615 7021638 10 2516 6.0 5.0 5.5 1.5 2539 chr2R 7019099 exon CG43646 + chr2R 7020368 exon CG43647 + chr2R 7021638 intergenic not near genes chr2R_10_7020001 chr2R_7020001 RAL-897 548 chr2R 7019205 7019233 chr2R 7021858 7021887 11 2656 6.0 22.5 14.2 0.7 2682 chr2R 7019205 exon CG43646 + chr2R 7020546 exon CG43647 + chr2R 7021887 intergenic not near genes chr2R_11_7020001 chr2R_7020001 RAL-897 549 chr2R 7139946 7139954 chr2R 7141415 7141446 hopper2 4 1486 6.5 10.0 8.2 0.4 1500 chr2R 7139946 intergenic not near genes chr2R 7140696 intergenic not near genes chr2R 7141446 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-897 550 chr2R 7170308 7170335 chr2R 7170455 7170482 12 146 3.0 6.0 4.5 2.2 174 chr2R 7170308 intron pk + chr2R 7170395 intron pk + chr2R 7170482 intron pk + chr2R_12_7170001 chr2R_7170001 RAL-897 551 chr2R 7171272 7171282 chr2R 7171358 7171367 5 85 9.0 6.0 7.5 0.6 95 chr2R 7171272 intron pk + chr2R 7171320 intron pk + chr2R 7171367 intron pk + chr2R_5_7170001 chr2R_7170001 RAL-897 552 chr2R 7224498 7224509 chr2R 7224556 7224586 9 69 3.0 9.0 6.0 1.3 88 chr2R 7224498 intergenic not near genes chr2R 7224542 intergenic not near genes chr2R 7224586 intergenic not near genes chr2R_9_7220001 chr2R_7220001 RAL-897 553 chr2R 7235818 7235852 chr2R 7240910 7240918 jockey 14 5088 8.5 5.0 6.8 1.8 5100 chr2R 7235818 intergenic not near genes chr2R 7238368 intergenic not near genes chr2R 7240918 intergenic not near genes chr2R_14_7235001 chr2R_7235001 RAL-897 554 chr2R 7310885 7310901 chr2R 7311850 7311865 6 966 46.5 27.0 36.8 0.2 980 chr2R 7310885 intergenic not near genes chr2R 7311375 intergenic CG12164 + chr2R 7311865 intron CG12164 + chr2R_6_7310001 chr2R_7310001 RAL-897 555 chr2R 7353391 7353419 chr2R 7353496 7353525 11 106 5.5 4.0 4.8 1.9 134 chr2R 7353391 intron Dscam1 - chr2R 7353458 intron Dscam1 - chr2R 7353525 intron Dscam1 - chr2R_11_7350001 chr2R_7350001 RAL-897 556 chr2R 7359849 7359867 chr2R 7360109 7360110 10 257 10.0 11.5 10.8 0.8 261 chr2R 7359849 intron Dscam1 - chr2R 7359980 intron Dscam1 - chr2R 7360110 intron Dscam1 - chr2R_10_7355001 chr2R_7355001 RAL-897 557 chr2R 7608410 7608421 chr2R 7613613 7613624 I-element 4 5202 5.0 0.0 2.5 1.1 5214 chr2R 7608410 intron CG1358 - chr2R 7611017 intron CG1358 - chr2R 7613624 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-897 558 chr2R 7692019 7692032 chr2R 7692100 7692113 6 81 0.0 1.5 0.8 3.3 94 chr2R 7692019 intron CG1399 - chr2R 7692066 intron CG1399 - chr2R 7692113 intron CG1399 - chr2R_6_7690001 chr2R_7690001 RAL-897 559 chr2R 7703832 7703855 chr2R 7703907 7703928 9 73 3.5 7.0 5.2 1.5 96 chr2R 7703832 3` UTR CG34216 - chr2R 7703880 3` UTR CG34216 - chr2R 7703928 exon CG34216 - chr2R_9_7700001 chr2R_7700001 RAL-897 560 chr2R 7714080 7714115 chr2R 7714156 7714191 13 76 1.5 4.5 3.0 3.2 111 chr2R 7714080 exon CG1942 + chr2R 7714136 3` UTR CG1942 + chr2R 7714191 intergenic CG1942 + chr2R_13_7710001 chr2R_7710001 RAL-897 561 chr2R 7815673 7815702 chr2R 7822139 7822158 Burdock 10 6467 2.5 2.5 2.5 2.9 6485 chr2R 7815673 intergenic CG1882 + chr2R 7818916 intergenic not near genes chr2R 7822158 3` UTR cathD - chr2R_10_7815001 chr2R_7815001 RAL-897 562 chr2R 7869194 7869216 chr2R 7873971 7874002 Doc 12 4784 5.5 2.0 3.8 2.5 4808 chr2R 7869194 intron Dgk - chr2R 7871598 intron Dgk - chr2R 7874002 intron Dgk - chr2R_12_7870001 chr2R_7870001 RAL-897 563 chr2R 7942945 7942975 chr2R 7943030 7943041 10 81 5.0 6.0 5.5 1.5 96 chr2R 7942945 intron CG14764 - chr2R 7942993 intron CG14764 - chr2R 7943041 intron CG14764 - chr2R_10_7940001 chr2R_7940001 RAL-897 564 chr2R 7999581 7999589 chr2R 7999664 7999672 4 83 2.5 0.5 1.5 1.6 91 chr2R 7999581 intergenic not near genes chr2R 7999626 intergenic not near genes chr2R 7999672 intergenic not near genes chr2R_4_7995001 chr2R_7995001 RAL-897 565 chr2R 8015650 8015683 chr2R 8017673 8017705 18 2020 2.0 5.0 3.5 4.0 2055 chr2R 8015650 intergenic mir-4981 + chr2R 8016678 intergenic not near genes chr2R 8017705 intergenic not near genes chr2R_18_8015001 chr2R_8015001 RAL-897 566 chr2R 8028567 8028598 chr2R 8028646 8028678 14 78 1.0 6.5 3.8 2.9 111 chr2R 8028567 intergenic CR43724 - chr2R 8028622 intergenic CR43724 - chr2R 8028678 intergenic CR43724 - chr2R_14_8025001 chr2R_8025001 RAL-897 567 chr2R 8076679 8076711 chr2R 8076759 8076791 10 79 3.0 2.5 2.8 2.6 112 chr2R 8076679 intron lig + chr2R 8076735 intron lig + chr2R 8076791 intron lig + chr2R_10_8075001 chr2R_8075001 RAL-897 568 chr2R 8330868 8330890 chr2R 8331352 8331376 roo 7 485 5.0 4.0 4.5 1.3 508 chr2R 8330868 intron pdm3 + chr2R 8331122 intron pdm3 + chr2R 8331376 intron pdm3 + chr2R_7_8330001 chr2R_8330001 RAL-897 569 chr2R 8398225 8398242 chr2R 8402988 8403008 Doc 8 4774 10.5 6.0 8.2 0.9 4783 chr2R 8398225 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403008 intron CG2121 - chr2R_8_8400001 chr2R_8400001 RAL-897 570 chr2R 8425861 8425879 chr2R 8426020 8426040 10 160 3.5 5.0 4.2 1.9 179 chr2R 8425861 intron CSN7 + chr2R 8425950 intron CSN7 + chr2R 8426040 intron CSN7 + chr2R_10_8425001 chr2R_8425001 RAL-897 571 chr2R 8454929 8454964 chr2R 8455872 8455907 9 944 51.5 22.0 36.8 0.2 978 chr2R 8454929 exon Mal-A2 + chr2R 8455418 exon Mal-A2 + chr2R 8455907 intergenic Mal-A3 -,Mal-A2 + chr2R_9_8455001 chr2R_8455001 RAL-897 572 chr2R 8470460 8470461 chr2R 8472541 8472560 8 2090 46.5 40.0 43.2 0.2 2100 chr2R 8470460 exon Mal-A7 - chr2R 8471510 exon Mal-A7 - chr2R 8472560 exon Mal-A8 + chr2R_8_8470001 chr2R_8470001 RAL-897 573 chr2R 8483974 8483989 chr2R 8484039 8484065 7 73 3.0 4.5 3.8 1.5 91 chr2R 8483974 intron mtt - chr2R 8484020 intron mtt - chr2R 8484065 intron mtt - chr2R_7_8480001 chr2R_8480001 RAL-897 574 chr2R 8511616 8511638 chr2R 8511695 8511718 14 76 3.5 10.0 6.8 1.8 102 chr2R 8511616 intron mtt - chr2R 8511667 intron mtt - chr2R 8511718 intron mtt - chr2R_14_8510001 chr2R_8510001 RAL-897 575 chr2R 8524065 8524104 chr2R 8524147 8524186 14 82 5.0 3.0 4.0 2.8 121 chr2R 8524065 intron mtt - chr2R 8524126 intron mtt - chr2R 8524186 intron mtt - chr2R_14_8520001 chr2R_8520001 RAL-897 576 chr2R 8536197 8536231 chr2R 8536429 8536450 23 230 3.0 4.5 3.8 4.8 253 chr2R 8536197 intergenic not near genes chr2R 8536324 intergenic not near genes chr2R 8536450 intergenic not near genes chr2R_23_8535001 chr2R_8535001 RAL-897 577 chr2R 8722763 8722792 chr2R 8723003 8723033 pogo 15 238 5.0 4.0 4.5 2.7 270 chr2R 8722763 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723033 intron CG14767 - chr2R_15_8720001 chr2R_8720001 RAL-897 578 chr2R 8764125 8764132 chr2R 8764270 8764281 7 148 5.5 14.5 10.0 0.6 156 chr2R 8764125 intergenic not near genes chr2R 8764203 intergenic not near genes chr2R 8764281 intergenic not near genes chr2R_7_8760001 chr2R_8760001 RAL-897 579 chr2R 8777931 8777944 chr2R 8784122 8784135 diver 4 6191 0.0 9.0 4.5 0.7 6204 chr2R 8777931 intergenic not near genes chr2R 8781033 intergenic not near genes chr2R 8784135 intergenic not near genes chr2R_4_8780001 chr2R_8780001 RAL-897 580 chr2R 9031977 9032012 chr2R 9032055 9032090 16 77 4.5 3.5 4.0 3.2 113 chr2R 9031977 intergenic not near genes chr2R 9032034 intergenic not near genes chr2R 9032090 intergenic not near genes chr2R_16_9030001 chr2R_9030001 RAL-897 581 chr2R 9052708 9052738 chr2R 9052789 9052797 20 80 0.0 8.0 4.0 4.0 89 chr2R 9052708 intron CG13743 - chr2R 9052752 intron CG13743 - chr2R 9052797 intron CG13743 - chr2R_20_9050001 chr2R_9050001 RAL-897 582 chr2R 9055437 9055459 chr2R 9055565 9055587 18 126 7.0 7.5 7.2 2.2 150 chr2R 9055437 intron CG13743 - chr2R 9055512 intron CG13743 - chr2R 9055587 intron CG13743 - chr2R_18_9055001 chr2R_9055001 RAL-897 583 chr2R 9212691 9212720 chr2R 9213177 9213204 roo 13 481 9.5 8.0 8.8 1.3 513 chr2R 9212691 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213204 5` UTR CR45309 + chr2R_13_9210001 chr2R_9210001 RAL-897 584 chr2R 9230225 9230238 chr2R 9230305 9230318 6 80 4.5 6.0 5.2 1.0 93 chr2R 9230225 intron hig - chr2R 9230272 intron hig - chr2R 9230318 exon hig - chr2R_6_9230001 chr2R_9230001 RAL-897 585 chr2R 9352255 9352256 chr2R 9361403 9361406 roo 4 9150 3.5 8.5 6.0 0.6 9151 chr2R 9352255 intron CG13954 - chr2R 9356830 intron CG13954 - chr2R 9361406 intron CG13954 - chr2R_4_9355001 chr2R_9355001 RAL-897 586 chr2R 9368130 9368133 chr2R 9368204 9368208 4 75 10.5 0.5 5.5 0.6 78 chr2R 9368130 intron CG13954 - chr2R 9368169 intron CG13954 - chr2R 9368208 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-897 587 chr2R 9368134 9368155 chr2R 9368202 9368214 7 66 3.0 0.5 1.8 2.5 80 chr2R 9368134 intron CG13954 - chr2R 9368174 intron CG13954 - chr2R 9368214 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-897 588 chr2R 9412084 9412107 chr2R 9412185 9412202 11 108 3.5 2.0 2.8 2.9 118 chr2R 9412084 intron wun - chr2R 9412143 intron wun - chr2R 9412202 intron wun - chr2R_11_9410001 chr2R_9410001 RAL-897 589 chr2R 9466680 9466686 chr2R 9466758 9466766 4 79 2.5 1.5 2.0 1.3 86 chr2R 9466680 intron Camta + chr2R 9466723 intron Camta + chr2R 9466766 intron Camta + chr2R_4_9465001 chr2R_9465001 RAL-897 590 chr2R 9480078 9480110 chr2R 9490609 9490641 roo 4 10530 0.5 1.5 1.0 2.0 10563 chr2R 9480078 intergenic not near genes chr2R 9485360 intergenic not near genes chr2R 9490641 intergenic not near genes chr2R_4_9485001 chr2R_9485001 RAL-897 591 chr2R 9510666 9510698 chr2R 9510781 9510814 11 115 2.5 3.5 3.0 2.8 148 chr2R 9510666 intron brp + chr2R 9510740 intron brp + chr2R 9510814 intron brp + chr2R_11_9510001 chr2R_9510001 RAL-897 592 chr2R 9541638 9541649 chr2R 9541702 9541726 6 75 0.0 3.0 1.5 2.4 88 chr2R 9541638 intergenic brp +,CG1888 - chr2R 9541682 intergenic brp +,CG1888 - chr2R 9541726 intergenic brp +,CG1888 - chr2R_6_9540001 chr2R_9540001 RAL-897 593 chr2R 9653255 9653287 chr2R 9653339 9653371 11 84 4.5 3.5 4.0 2.2 116 chr2R 9653255 intron Mmp2 - chr2R 9653313 intron Mmp2 - chr2R 9653371 intron Mmp2 - chr2R_11_9650001 chr2R_9650001 RAL-897 594 chr2R 9726626 9726644 chr2R 9734177 9734195 17.6 4 7551 2.5 2.5 2.5 1.1 7569 chr2R 9726626 intron sqa - chr2R 9730410 intron sqa - chr2R 9734195 intron sqa - chr2R_4_9730001 chr2R_9730001 RAL-897 595 chr2R 9790076 9790109 chr2R 9790153 9790186 15 75 8.5 2.5 5.5 2.3 110 chr2R 9790076 intron,5` UTR CG1688 -,CR44208 + chr2R 9790131 intron,5` UTR CG1688 -,CR44208 + chr2R 9790186 intron,5` UTR CG1688 -,CR44208 + chr2R_15_9790001 chr2R_9790001 RAL-897 596 chr2R 9869675 9869703 chr2R 9869786 9869792 8 106 4.0 1.0 2.5 2.3 117 chr2R 9869675 intron cbx - chr2R 9869734 intron cbx - chr2R 9869792 intron cbx - chr2R_8_9865001 chr2R_9865001 RAL-897 597 chr2R 9928419 9928449 chr2R 9928544 9928574 18 124 3.0 3.5 3.2 4.3 155 chr2R 9928419 intron Mef2 - chr2R 9928496 intron Mef2 - chr2R 9928574 intron Mef2 - chr2R_18_9925001 chr2R_9925001 RAL-897 598 chr2R 9950298 9950328 chr2R 9950375 9950404 12 75 1.5 5.5 3.5 2.7 106 chr2R 9950298 intron Mef2 - chr2R 9950351 intron Mef2 - chr2R 9950404 intron Mef2 - chr2R_12_9950001 chr2R_9950001 RAL-897 599 chr2R 10004590 10004598 chr2R 10004689 10004696 5 98 14.0 7.5 10.8 0.4 106 chr2R 10004590 intron Pka-R2 - chr2R 10004643 intron Pka-R2 - chr2R 10004696 intron Pka-R2 - chr2R_5_10000001 chr2R_10000001 RAL-897 600 chr2R 10004603 10004626 chr2R 10004688 10004724 20 95 3.0 7.5 5.2 3.2 121 chr2R 10004603 intron Pka-R2 - chr2R 10004664 intron Pka-R2 - chr2R 10004724 intron Pka-R2 - chr2R_20_10000001 chr2R_10000001 RAL-897 601 chr2R 10005850 10005884 chr2R 10007014 10007015 1360 16 1157 4.5 5.5 5.0 2.7 1165 chr2R 10005850 intron Pka-R2 - chr2R 10006432 intron Pka-R2 - chr2R 10007015 intron Pka-R2 - chr2R_16_10005001 chr2R_10005001 RAL-897 602 chr2R 10122742 10122750 chr2R 10122952 10122960 6 210 5.0 0.5 2.8 1.6 218 chr2R 10122742 intergenic Ccs - chr2R 10122851 intergenic Ccs - chr2R 10122960 intergenic Ccs - chr2R_6_10120001 chr2R_10120001 RAL-897 603 chr2R 10169537 10169565 chr2R 10169617 10169644 13 72 4.0 6.0 5.0 2.2 107 chr2R 10169537 intron KCNQ - chr2R 10169590 intron KCNQ - chr2R 10169644 intron KCNQ - chr2R_13_10165001 chr2R_10165001 RAL-897 604 chr2R 10176886 10176907 chr2R 10186047 10186074 roo 5 9166 4.5 0.5 2.5 1.4 9188 chr2R 10176886 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186074 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-897 605 chr2R 10186116 10186129 chr2R 10186192 10186205 5 76 0.5 3.5 2.0 1.7 89 chr2R 10186116 intron KCNQ - chr2R 10186160 intron KCNQ - chr2R 10186205 intron KCNQ - chr2R_5_10185001 chr2R_10185001 RAL-897 606 chr2R 10203641 10203661 chr2R 10203726 10203746 7 84 3.5 0.5 2.0 2.3 105 chr2R 10203641 intergenic not near genes chr2R 10203694 intergenic not near genes chr2R 10203746 intergenic not near genes chr2R_7_10200001 chr2R_10200001 RAL-897 607 chr2R 10318517 10318546 chr2R 10318603 10318631 11 86 6.5 3.5 5.0 1.8 114 chr2R 10318517 intron Ndg + chr2R 10318574 intron Ndg + chr2R 10318631 intron Ndg + chr2R_11_10315001 chr2R_10315001 RAL-897 608 chr2R 10352679 10352695 chr2R 10352755 10352755 12 75 4.5 7.0 5.8 1.8 76 chr2R 10352679 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352717 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352755 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_12_10350001 chr2R_10350001 RAL-897 609 chr2R 10352698 10352704 chr2R 10352751 10352759 5 66 3.0 6.5 4.8 0.9 61 chr2R 10352698 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352759 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_5_10350001 chr2R_10350001 RAL-897 610 chr2R 10368983 10369007 chr2R 10369071 10369095 16 87 7.0 6.0 6.5 2.1 112 chr2R 10368983 intron CG42732 - chr2R 10369039 intron CG42732 - chr2R 10369095 intron CG42732 - chr2R_16_10365001 chr2R_10365001 RAL-897 611 chr2R 10429018 10429048 chr2R 10429095 10429100 16 68 2.5 3.0 2.8 4.2 82 chr2R 10429018 intergenic not near genes chr2R 10429059 intergenic not near genes chr2R 10429100 intergenic not near genes chr2R_16_10425001 chr2R_10425001 RAL-897 612 chr2R 10469026 10469056 chr2R 10469152 10469182 15 126 2.0 6.5 4.2 2.9 156 chr2R 10469026 intron CG11777 + chr2R 10469104 intron CG11777 + chr2R 10469182 intron CG11777 + chr2R_15_10465001 chr2R_10465001 RAL-897 613 chr2R 10572013 10572044 chr2R 10572205 10572236 12 192 5.5 5.5 5.5 1.8 223 chr2R 10572013 intron psq + chr2R 10572124 intron psq + chr2R 10572236 intron psq + chr2R_12_10570001 chr2R_10570001 RAL-897 614 chr2R 10644058 10644085 chr2R 10644136 10644163 8 78 3.5 1.0 2.2 2.5 105 chr2R 10644058 intron Git - chr2R 10644110 intron Git - chr2R 10644163 intron Git - chr2R_8_10640001 chr2R_10640001 RAL-897 615 chr2R 10653204 10653237 chr2R 10653283 10653316 12 77 2.0 4.5 3.2 2.9 112 chr2R 10653204 intergenic not near genes chr2R 10653260 intergenic not near genes chr2R 10653316 intergenic not near genes chr2R_12_10650001 chr2R_10650001 RAL-897 616 chr2R 10678503 10678522 chr2R 10678592 10678615 9 100 4.0 6.5 5.2 1.5 112 chr2R 10678503 intron stan + chr2R 10678559 intron stan + chr2R 10678615 intron stan + chr2R_9_10675001 chr2R_10675001 RAL-897 617 chr2R 10827334 10827360 chr2R 10827419 10827430 11 83 5.5 2.5 4.0 2.2 96 chr2R 10827334 exon CG12325 + chr2R 10827382 3` UTR CG12325 + chr2R 10827430 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_11_10825001 chr2R_10825001 RAL-897 618 chr2R 10845490 10845527 chr2R 10845567 10845582 11 75 5.5 6.5 6.0 1.6 92 chr2R 10845490 intron CG30015 - chr2R 10845536 intron CG30015 - chr2R 10845582 intron CG30015 - chr2R_11_10845001 chr2R_10845001 RAL-897 619 chr2R 10873345 10873360 chr2R 10873432 10873446 4 86 3.5 1.0 2.2 1.2 101 chr2R 10873345 intron CG30015 - chr2R 10873396 intron CG30015 - chr2R 10873446 intron CG30015 - chr2R_4_10870001 chr2R_10870001 RAL-897 620 chr2R 10924552 10924566 chr2R 10924619 10924624 7 69 0.0 3.0 1.5 2.8 72 chr2R 10924552 intergenic not near genes chr2R 10924588 intergenic not near genes chr2R 10924624 intergenic not near genes chr2R_7_10920001 chr2R_10920001 RAL-897 621 chr2R 10947095 10947100 chr2R 10947181 10947187 5 87 5.0 0.0 2.5 1.4 92 chr2R 10947095 5` UTR CR45228 + chr2R 10947141 intergenic CR45228 + chr2R 10947187 intergenic CR45228 + chr2R_5_10945001 chr2R_10945001 RAL-897 622 chr2R 10948026 10948062 chr2R 10955577 10955612 17.6 17 7546 0.5 9.5 5.0 2.8 7586 chr2R 10948026 intergenic not near genes chr2R 10951819 intergenic not near genes chr2R 10955612 intergenic not near genes chr2R_17_10950001 chr2R_10950001 RAL-897 623 chr2R 11009812 11009848 chr2R 11018986 11019021 roo 22 9171 4.0 5.0 4.5 4.0 9209 chr2R 11009812 intron luna - chr2R 11014416 intron luna - chr2R 11019021 intron luna - chr2R_22_11010001 chr2R_11010001 RAL-897 624 chr2R 11019881 11019907 chr2R 11024941 11024963 jockey 17 5060 3.5 7.0 5.2 2.7 5082 chr2R 11019881 intron luna - chr2R 11022422 intron luna - chr2R 11024963 intron luna - chr2R_17_11020001 chr2R_11020001 RAL-897 625 chr2R 11091669 11091704 chr2R 11091836 11091870 12 165 2.0 4.5 3.2 2.9 201 chr2R 11091669 intron luna - chr2R 11091770 intron luna - chr2R 11091870 intron luna - chr2R_12_11090001 chr2R_11090001 RAL-897 626 chr2R 11097357 11097388 chr2R 11097462 11097492 11 103 3.0 4.5 3.8 2.3 135 chr2R 11097357 intron luna - chr2R 11097424 intron luna - chr2R 11097492 intron luna - chr2R_11_11095001 chr2R_11095001 RAL-897 627 chr2R 11102869 11102890 chr2R 11102951 11102972 14 80 6.0 0.0 3.0 3.5 103 chr2R 11102869 intron luna - chr2R 11102920 intron luna - chr2R 11102972 intron luna - chr2R_14_11100001 chr2R_11100001 RAL-897 628 chr2R 11118168 11118179 chr2R 11118245 11118256 4 77 0.0 5.0 2.5 1.1 88 chr2R 11118168 3` UTR Cyp12d1-p - chr2R 11118212 3` UTR Cyp12d1-p - chr2R 11118256 3` UTR Cyp12d1-p - chr2R_4_11115001 chr2R_11115001 RAL-897 629 chr2R 11144288 11144309 chr2R 11144386 11144410 13 100 1.0 1.0 1.0 6.5 122 chr2R 11144288 intron CG13229 - chr2R 11144349 intron CG13229 - chr2R 11144410 intron CG13229 - chr2R_13_11140001 chr2R_11140001 RAL-897 630 chr2R 11150188 11150197 chr2R 11150264 11150273 4 76 4.0 8.5 6.2 0.6 85 chr2R 11150188 intron CG13229 - chr2R 11150230 intron CG13229 - chr2R 11150273 intron CG13229 - chr2R_4_11150001 chr2R_11150001 RAL-897 631 chr2R 11150812 11150822 chr2R 11150888 11150898 5 76 2.0 0.0 1.0 2.5 86 chr2R 11150812 intron CG13229 - chr2R 11150855 intron CG13229 - chr2R 11150898 intron CG13229 - chr2R_5_11150001 chr2R_11150001 RAL-897 632 chr2R 11207815 11207846 chr2R 11208008 11208039 BS 23 193 5.5 3.5 4.5 4.2 224 chr2R 11207815 intron shn + chr2R 11207927 intron shn + chr2R 11208039 intron shn + chr2R_23_11205001 chr2R_11205001 RAL-897 633 chr2R 11249174 11249192 chr2R 11249300 11249310 6 124 1.5 0.0 0.8 3.3 136 chr2R 11249174 intergenic CG43112 + chr2R 11249242 intergenic CG43112 + chr2R 11249310 intergenic CG43112 + chr2R_6_11245001 chr2R_11245001 RAL-897 634 chr2R 11292967 11293000 chr2R 11293046 11293061 20 76 4.0 0.0 2.0 6.7 94 chr2R 11292967 exon,3` UTR dare -,CG30033 + chr2R 11293014 exon,3` UTR dare -,CG30033 + chr2R 11293061 5` UTR,3` UTR dare -,CG30033 + chr2R_20_11290001 chr2R_11290001 RAL-897 635 chr2R 11297616 11297636 chr2R 11301937 11301957 flea 14 4321 9.0 4.0 6.5 1.9 4341 chr2R 11297616 intergenic CG42336 - chr2R 11299786 intergenic not near genes chr2R 11301957 5` UTR CG7741 + chr2R_14_11295001 chr2R_11295001 RAL-897 636 chr2R 11344152 11344180 chr2R 11344248 11344272 4 95 0.0 4.0 2.0 1.3 120 chr2R 11344152 intergenic alphaTry - chr2R 11344212 intergenic alphaTry - chr2R 11344272 3` UTR alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-897 637 chr2R 11415534 11415551 chr2R 11418666 11418699 opus 11 3144 5.5 5.0 5.2 1.8 3165 chr2R 11415534 intron Drip - chr2R 11417116 intron Drip - chr2R 11418699 intron Drip - chr2R_11_11415001 chr2R_11415001 RAL-897 638 chr2R 11472649 11472680 chr2R 11473845 11473877 pogo 18 1197 3.5 6.5 5.0 3.0 1228 chr2R 11472649 intergenic not near genes chr2R 11473263 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_18_11470001 chr2R_11470001 RAL-897 639 chr2R 11614631 11614778 chr2R 11614719 11614867 5 88 0.5 3.0 1.8 1.8 236 chr2R 11614631 intron tou - chr2R 11614749 intron tou - chr2R 11614867 intron tou - chr2R_5_11610001 chr2R_11610001 RAL-897 640 chr2R 11636436 11636442 chr2R 11636484 11636502 4 58 2.0 2.5 2.2 1.2 66 chr2R 11636436 intron CG9005 - chr2R 11636469 intron CG9005 - chr2R 11636502 intron CG9005 - chr2R_4_11635001 chr2R_11635001 RAL-897 641 chr2R 11637327 11637333 chr2R 11637404 11637407 5 76 7.5 13.5 10.5 0.4 80 chr2R 11637327 intron CG9005 - chr2R 11637367 intron CG9005 - chr2R 11637407 intron CG9005 - chr2R_5_11635001 chr2R_11635001 RAL-897 642 chr2R 11641852 11641886 chr2R 11641946 11641980 11 92 1.0 4.5 2.8 2.9 128 chr2R 11641852 3` UTR CG9003 - chr2R 11641916 3` UTR CG9003 - chr2R 11641980 3` UTR CG9003 - chr2R_11_11640001 chr2R_11640001 RAL-897 643 chr2R 11932566 11932586 chr2R 11932677 11932703 19 113 7.0 1.5 4.2 3.7 137 chr2R 11932566 intergenic not near genes chr2R 11932634 intergenic not near genes chr2R 11932703 intergenic not near genes chr2R_19_11930001 chr2R_11930001 RAL-897 644 chr2R 8518780 8518791 chr2R 12066174 12066201 8 3547399 3.5 20.5 12.0 0.6 3547421 chr2R 8518780 intron mtt - chr2R 10292490 intron CAP + chr2R 12066201 intron CG8888 - chr2R_8_10290001 chr2R_10290001 RAL-897 645 chr2R 12186003 12186037 chr2R 12186098 12186130 9 95 1.5 3.0 2.2 2.8 127 chr2R 12186003 intron Cyp6g1 + chr2R 12186066 intron Cyp6g1 + chr2R 12186130 intron Cyp6g1 + chr2R_9_12185001 chr2R_12185001 RAL-897 646 chr2R 12187471 12187508 chr2R 12190088 12190124 73 2622 157.5 126.0 141.8 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_73_12185001 chr2R_12185001 RAL-897 647 chr2R 12217575 12217603 chr2R 12217656 12217683 12 79 2.5 3.0 2.8 3.2 108 chr2R 12217575 intergenic not near genes chr2R 12217629 intergenic not near genes chr2R 12217683 intergenic not near genes chr2R_12_12215001 chr2R_12215001 RAL-897 648 chr2R 12334882 12334909 chr2R 12334960 12334962 8 74 5.5 8.0 6.8 1.0 80 chr2R 12334882 intergenic CG8490 + chr2R 12334922 intergenic CG8490 + chr2R 12334962 intergenic CG8490 + chr2R_8_12330001 chr2R_12330001 RAL-897 649 chr2R 12363379 12363417 chr2R 12363811 12363848 18 431 2.5 1.5 2.0 6.0 469 chr2R 12363379 intergenic CG30043 + chr2R 12363614 intergenic CG30043 + chr2R 12363848 intergenic not near genes chr2R_18_12360001 chr2R_12360001 RAL-897 650 chr2R 12385343 12385379 chr2R 12385424 12385459 16 80 0.0 2.5 1.2 7.3 116 chr2R 12385343 intergenic not near genes chr2R 12385401 intergenic not near genes chr2R 12385459 intergenic not near genes chr2R_16_12385001 chr2R_12385001 RAL-897 651 chr2R 12452400 12452409 chr2R 12452469 12452473 6 74 4.5 4.0 4.2 1.2 73 chr2R 12452400 3` UTR Dyb + chr2R 12452436 3` UTR Dyb + chr2R 12452473 3` UTR Dyb + chr2R_6_12450001 chr2R_12450001 RAL-897 652 chr2R 12481138 12481169 chr2R 12482938 12482961 roo 9 1799 4.5 5.0 4.8 1.6 1823 chr2R 12481138 exon Dh44-R2 + chr2R 12482050 intron Dh44-R2 + chr2R 12482961 intron Dh44-R2 + chr2R_9_12480001 chr2R_12480001 RAL-897 653 chr2R 12486450 12486457 chr2R 12486651 12486669 7 204 16.0 20.0 18.0 0.4 219 chr2R 12486450 intron Dh44-R2 + chr2R 12486560 intron Dh44-R2 + chr2R 12486669 intron Dh44-R2 + chr2R_7_12485001 chr2R_12485001 RAL-897 654 chr2R 12501690 12501706 chr2R 12503851 12503867 Rt1c 5 2161 10.5 6.0 8.2 0.5 2177 chr2R 12501690 intron fdl - chr2R 12502778 intron fdl - chr2R 12503867 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-897 655 chr2R 12501707 12501728 chr2R 12503848 12503868 Rt1c 6 2150 4.0 6.0 5.0 1.0 2161 chr2R 12501707 intron fdl - chr2R 12502788 intron fdl - chr2R 12503868 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-897 656 chr2R 12504145 12504180 chr2R 12504222 12504242 23 73 3.5 8.0 5.8 3.4 97 chr2R 12504145 intron fdl - chr2R 12504194 intron fdl - chr2R 12504242 intron fdl - chr2R_23_12500001 chr2R_12500001 RAL-897 657 chr2R 12540476 12540497 chr2R 12540557 12540566 11 75 6.0 3.0 4.5 2.0 90 chr2R 12540476 intron fra + chr2R 12540521 intron fra + chr2R 12540566 intron fra + chr2R_11_12540001 chr2R_12540001 RAL-897 658 chr2R 12643794 12643798 chr2R 12643871 12643875 4 77 2.5 7.0 4.8 0.7 81 chr2R 12643794 intron CG8785 - chr2R 12643834 intron CG8785 - chr2R 12643875 intron CG8785 - chr2R_4_12640001 chr2R_12640001 RAL-897 659 chr2R 12643799 12643814 chr2R 12643866 12643889 7 75 1.5 4.5 3.0 1.8 90 chr2R 12643799 intron CG8785 - chr2R 12643844 intron CG8785 - chr2R 12643889 exon CG8785 - chr2R_7_12640001 chr2R_12640001 RAL-897 660 chr2R 12774247 12774257 chr2R 12774332 12774339 5 84 4.0 0.0 2.0 1.7 92 chr2R 12774247 intergenic not near genes chr2R 12774293 intergenic not near genes chr2R 12774339 intergenic not near genes chr2R_5_12770001 chr2R_12770001 RAL-897 661 chr2R 12789295 12789326 chr2R 12797658 12797663 roo 11 8355 4.0 6.0 5.0 1.8 8368 chr2R 12789295 intron,3` UTR sca +,CR45137 - chr2R 12793479 intron,intron sca +,CR45137 - chr2R 12797663 intron,3` UTR sca +,CR45137 - chr2R_11_12790001 chr2R_12790001 RAL-897 662 chr2R 12815578 12815605 chr2R 12815674 12815701 17 95 8.5 10.5 9.5 1.6 123 chr2R 12815578 intergenic not near genes chr2R 12815640 intergenic not near genes chr2R 12815701 intergenic not near genes chr2R_17_12815001 chr2R_12815001 RAL-897 663 chr2R 12819443 12819474 chr2R 12824516 12824547 jockey 15 5073 5.0 8.0 6.5 2.0 5104 chr2R 12819443 intergenic not near genes chr2R 12821995 intergenic not near genes chr2R 12824547 intergenic not near genes chr2R_15_12820001 chr2R_12820001 RAL-897 664 chr2R 13084082 13084106 chr2R 13084176 13084199 11 95 5.5 5.5 5.5 1.7 117 chr2R 13084082 intergenic not near genes chr2R 13084140 intergenic not near genes chr2R 13084199 intergenic not near genes chr2R_11_13080001 chr2R_13080001 RAL-897 665 chr2R 13106419 13106423 chr2R 13106501 13106520 4 88 10.5 7.5 9.0 0.4 101 chr2R 13106419 intergenic not near genes chr2R 13106470 intergenic not near genes chr2R 13106520 intergenic not near genes chr2R_4_13105001 chr2R_13105001 RAL-897 666 chr2R 13136840 13136870 chr2R 13141638 13141662 Doc 13 4796 3.0 8.0 5.5 2.0 4822 chr2R 13136840 exon Cap-G + chr2R 13139251 intron Cap-G + chr2R 13141662 intron Cap-G + chr2R_13_13135001 chr2R_13135001 RAL-897 667 chr2R 13220541 13220550 chr2R 13220639 13220649 5 99 0.0 4.5 2.2 1.6 108 chr2R 13220541 intron CG17059 + chr2R 13220595 intron CG17059 + chr2R 13220649 intron CG17059 + chr2R_5_13220001 chr2R_13220001 RAL-897 668 chr2R 13348989 13349006 chr2R 13349070 13349087 4 81 2.0 0.0 1.0 2.0 98 chr2R 13348989 intron CR44206 - chr2R 13349038 intron CR44206 - chr2R 13349087 intron CR44206 - chr2R_4_13345001 chr2R_13345001 RAL-897 669 chr2R 13356507 13356536 chr2R 13356589 13356621 18 85 3.5 6.0 4.8 3.1 114 chr2R 13356507 intergenic not near genes chr2R 13356564 intergenic not near genes chr2R 13356621 intergenic not near genes chr2R_18_13355001 chr2R_13355001 RAL-897 670 chr2R 13431490 13431520 chr2R 13431569 13431599 10 79 4.0 2.5 3.2 2.4 109 chr2R 13431490 intron CG42321 - chr2R 13431544 intron CG42321 - chr2R 13431599 intron CG42321 - chr2R_10_13430001 chr2R_13430001 RAL-897 671 chr2R 13432945 13432968 chr2R 13433014 13433044 4 74 2.0 3.0 2.5 1.1 99 chr2R 13432945 intron CG42321 - chr2R 13432994 intron CG42321 - chr2R 13433044 intron,5` UTR CG42321 -,CG30065 + chr2R_4_13430001 chr2R_13430001 RAL-897 672 chr2R 13439109 13439230 chr2R 13439224 13439306 7 113 0.5 0.0 0.2 5.8 197 chr2R 13439109 intergenic CG42321 -,cnn - chr2R 13439208 intergenic cnn -,CG42321 - chr2R 13439306 intergenic cnn -,CG42321 - chr2R_7_13435001 chr2R_13435001 RAL-897 673 chr2R 13566262 13566272 chr2R 13566342 13566352 5 80 6.0 1.0 3.5 1.1 90 chr2R 13566262 intergenic not near genes chr2R 13566307 intergenic not near genes chr2R 13566352 intergenic not near genes chr2R_5_13565001 chr2R_13565001 RAL-897 674 chr2R 13566274 13566291 chr2R 13566341 13566371 9 79 3.0 1.0 2.0 3.0 97 chr2R 13566274 intergenic not near genes chr2R 13566322 intergenic not near genes chr2R 13566371 intergenic not near genes chr2R_9_13565001 chr2R_13565001 RAL-897 675 chr2R 13574402 13574431 chr2R 13574483 13574511 5 80 4.0 3.0 3.5 1.1 109 chr2R 13574402 intergenic CG42808 - chr2R 13574456 intergenic CG42808 -,CR44365 + chr2R 13574511 intergenic CG42808 -,CR44365 + chr2R_5_13570001 chr2R_13570001 RAL-897 676 chr2R 13580502 13580512 chr2R 13580852 13580860 jockey 6 350 2.5 5.5 4.0 1.2 358 chr2R 13580502 3` UTR CG6191 - chr2R 13580681 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580860 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_6_13580001 chr2R_13580001 RAL-897 677 chr2R 13580513 13580526 chr2R 13580849 13580876 jockey 7 345 1.0 4.0 2.5 2.0 363 chr2R 13580513 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580876 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_7_13580001 chr2R_13580001 RAL-897 678 chr2R 13587694 13587726 chr2R 13587782 13587813 18 86 5.0 1.5 3.2 4.3 119 chr2R 13587694 intron,intron CG6191 -,CG45088 - chr2R 13587754 intron,intron CG6191 -,CG45088 - chr2R 13587813 intron,intron CG6191 -,CG45088 - chr2R_18_13585001 chr2R_13585001 RAL-897 679 chr2R 13608276 13608302 chr2R 13608360 13608386 15 82 1.5 4.5 3.0 3.8 110 chr2R 13608276 intergenic CG12464 - chr2R 13608331 intergenic CG12464 - chr2R 13608386 intergenic CG12464 - chr2R_15_13605001 chr2R_13605001 RAL-897 680 chr2R 13694626 13694661 chr2R 13694703 13694738 10 73 4.5 5.0 4.8 1.7 112 chr2R 13694626 intron fas + chr2R 13694682 intron fas + chr2R 13694738 intron fas + chr2R_10_13690001 chr2R_13690001 RAL-897 681 chr2R 13714878 13714883 chr2R 13715058 13715059 4 178 5.5 1.0 3.2 1.0 181 chr2R 13714878 intron fas + chr2R 13714968 intron fas + chr2R 13715059 intron fas + chr2R_4_13710001 chr2R_13710001 RAL-897 682 chr2R 13728151 13728164 chr2R 13735808 13735812 opus 5 7655 2.0 2.5 2.2 1.6 7661 chr2R 13728151 intron fas + chr2R 13731982 intron fas + chr2R 13735812 intron fas + chr2R_5_13730001 chr2R_13730001 RAL-897 683 chr2R 13752805 13752833 chr2R 13752904 13752931 7 98 3.0 3.5 3.2 1.7 126 chr2R 13752805 intergenic not near genes chr2R 13752868 intergenic not near genes chr2R 13752931 intergenic not near genes chr2R_7_13750001 chr2R_13750001 RAL-897 684 chr2R 13768980 13769010 chr2R 13769079 13769109 13 98 3.0 5.0 4.0 2.6 129 chr2R 13768980 intergenic not near genes chr2R 13769044 intergenic not near genes chr2R 13769109 intergenic not near genes chr2R_13_13765001 chr2R_13765001 RAL-897 685 chr2R 13888762 13888792 chr2R 13888839 13888864 5 76 2.5 0.0 1.2 2.3 102 chr2R 13888762 intron shot - chr2R 13888813 intron shot - chr2R 13888864 intron shot - chr2R_5_13885001 chr2R_13885001 RAL-897 686 chr2R 13905600 13905609 chr2R 13907582 13907590 Rt1a 5 1981 11.0 6.5 8.8 0.5 1990 chr2R 13905600 intron shot - chr2R 13906595 intron shot - chr2R 13907590 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-897 687 chr2R 13905611 13905631 chr2R 13907580 13907596 Rt1a 6 1972 6.0 5.0 5.5 0.9 1985 chr2R 13905611 intron shot - chr2R 13906604 intron shot - chr2R 13907596 intron shot - chr2R_6_13905001 chr2R_13905001 RAL-897 688 chr2R 13986880 13986912 chr2R 13986969 13987000 13 88 2.0 5.5 3.8 2.7 120 chr2R 13986880 intron RN-tre - chr2R 13986940 intron RN-tre - chr2R 13987000 intron RN-tre - chr2R_13_13985001 chr2R_13985001 RAL-897 689 chr2R 14000238 14000264 chr2R 14000466 14000492 5 228 1.5 1.5 1.5 2.0 254 chr2R 14000238 intron mam + chr2R 14000365 intron mam + chr2R 14000492 intron mam + chr2R_5_14000001 chr2R_14000001 RAL-897 690 chr2R 14093432 14093455 chr2R 14109583 14109586 7 16148 5.5 0.5 3.0 1.8 16154 chr2R 14093432 intron Prosap - chr2R 14101509 intron Prosap - chr2R 14109586 intron Prosap - chr2R_7_14100001 chr2R_14100001 RAL-897 691 chr2R 14142449 14142475 chr2R 14142539 14142565 6 90 3.0 2.0 2.5 1.7 116 chr2R 14142449 intergenic not near genes chr2R 14142507 intergenic not near genes chr2R 14142565 intergenic not near genes chr2R_6_14140001 chr2R_14140001 RAL-897 692 chr2R 14393868 14393874 chr2R 14393953 14393959 4 85 11.5 2.0 6.8 0.5 91 chr2R 14393868 intergenic not near genes chr2R 14393914 intergenic not near genes chr2R 14393959 intergenic not near genes chr2R_4_14390001 chr2R_14390001 RAL-897 693 chr2R 14393877 14393899 chr2R 14393951 14393984 9 81 2.5 2.0 2.2 2.8 107 chr2R 14393877 intergenic not near genes chr2R 14393930 intergenic not near genes chr2R 14393984 intergenic not near genes chr2R_9_14390001 chr2R_14390001 RAL-897 694 chr2R 14400523 14400553 chr2R 14400602 14400632 8 77 1.0 2.0 1.5 3.2 109 chr2R 14400523 intergenic not near genes chr2R 14400578 intergenic not near genes chr2R 14400632 intergenic not near genes chr2R_8_14400001 chr2R_14400001 RAL-897 695 chr2R 14467305 14467327 chr2R 14476463 14476485 roo 9 9157 2.5 4.0 3.2 2.1 9180 chr2R 14467305 intergenic not near genes chr2R 14471895 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_9_14470001 chr2R_14470001 RAL-897 696 chr2R 14530770 14530782 chr2R 14530849 14530857 8 78 6.0 4.5 5.2 1.3 87 chr2R 14530770 intron ttv + chr2R 14530814 intron ttv + chr2R 14530857 intron ttv + chr2R_8_14530001 chr2R_14530001 RAL-897 697 chr2R 14563485 14563501 chr2R 14563566 14563582 7 81 13.0 1.0 7.0 0.9 97 chr2R 14563485 intron ttv + chr2R 14563534 intron ttv + chr2R 14563582 intron ttv + chr2R_7_14560001 chr2R_14560001 RAL-897 698 chr2R 14565558 14565576 chr2R 14565635 14565652 5 77 7.0 2.0 4.5 0.9 94 chr2R 14565558 intron ttv + chr2R 14565605 intron ttv + chr2R 14565652 intron ttv + chr2R_5_14565001 chr2R_14565001 RAL-897 699 chr2R 14641850 14641878 chr2R 14641974 14641991 13 124 4.0 6.5 5.2 2.1 141 chr2R 14641850 intergenic not near genes chr2R 14641920 intergenic not near genes chr2R 14641991 intergenic not near genes chr2R_13_14640001 chr2R_14640001 RAL-897 700 chr2R 14707071 14707097 chr2R 14707149 14707177 6 77 1.5 0.0 0.8 3.3 106 chr2R 14707071 intron mspo - chr2R 14707124 intron mspo - chr2R 14707177 intron mspo - chr2R_6_14705001 chr2R_14705001 RAL-897 701 chr2R 14786042 14786061 chr2R 14786135 14786154 4 93 0.0 2.0 1.0 2.0 112 chr2R 14786042 intron kn - chr2R 14786098 intron kn - chr2R 14786154 intron kn - chr2R_4_14785001 chr2R_14785001 RAL-897 702 chr2R 14826413 14826429 chr2R 14826506 14826533 4 100 3.0 0.5 1.8 1.4 120 chr2R 14826413 intergenic not near genes chr2R 14826473 intergenic not near genes chr2R 14826533 intergenic not near genes chr2R_4_14825001 chr2R_14825001 RAL-897 703 chr2R 14889206 14889235 chr2R 14897814 14897838 Max-element 6 8607 5.5 0.5 3.0 1.5 8632 chr2R 14889206 intergenic Cyp6a8 - chr2R 14893522 intergenic not near genes chr2R 14897838 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-897 704 chr2R 14911701 14911725 chr2R 14911824 14911848 13 123 3.5 5.5 4.5 2.4 147 chr2R 14911701 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911848 intron CG10249 - chr2R_13_14910001 chr2R_14910001 RAL-897 705 chr2R 14922141 14922173 chr2R 14922217 14922249 17 76 3.0 2.0 2.5 4.9 108 chr2R 14922141 intron CG10249 - chr2R 14922195 intron CG10249 - chr2R 14922249 intron CG10249 - chr2R_17_14920001 chr2R_14920001 RAL-897 706 chr2R 14954752 14954785 chr2R 14954828 14954861 9 76 1.0 1.0 1.0 4.5 109 chr2R 14954752 intron aPKC - chr2R 14954806 intron aPKC - chr2R 14954861 intron aPKC - chr2R_9_14950001 chr2R_14950001 RAL-897 707 chr2R 14955670 14955697 chr2R 14955759 14955786 5 89 2.5 0.0 1.2 2.3 116 chr2R 14955670 intron aPKC - chr2R 14955728 intron aPKC - chr2R 14955786 intron aPKC - chr2R_5_14955001 chr2R_14955001 RAL-897 708 chr2R 15015454 15015489 chr2R 15022878 15022913 mdg1 14 7422 4.5 2.0 3.2 3.3 7459 chr2R 15015454 intron hbs + chr2R 15019184 intron hbs + chr2R 15022913 intron hbs + chr2R_14_15015001 chr2R_15015001 RAL-897 709 chr2R 15084980 15085005 chr2R 15092027 15092054 297 10 7047 4.0 3.5 3.8 2.1 7074 chr2R 15084980 intergenic not near genes chr2R 15088517 intergenic not near genes chr2R 15092054 5` UTR CR44457 + chr2R_10_15085001 chr2R_15085001 RAL-897 710 chr2R 15119316 15119349 chr2R 15127797 15127830 Tirant 7 8480 7.0 7.5 7.2 0.9 8514 chr2R 15119316 intron chn + chr2R 15123573 intron chn + chr2R 15127830 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-897 711 chr2R 15133428 15133458 chr2R 15133519 15133575 8 110 3.5 0.0 1.8 2.9 147 chr2R 15133428 intron chn + chr2R 15133502 intron chn + chr2R 15133575 intron chn + chr2R_8_15130001 chr2R_15130001 RAL-897 712 chr2R 15137967 15138004 chr2R 15138047 15138080 13 78 4.0 0.0 2.0 4.3 113 chr2R 15137967 intron chn + chr2R 15138024 intron chn + chr2R 15138080 intron chn + chr2R_13_15135001 chr2R_15135001 RAL-897 713 chr2R 15296160 15296172 chr2R 15296243 15296254 6 82 6.0 4.5 5.2 1.0 94 chr2R 15296160 intron Trpm - chr2R 15296207 intron Trpm - chr2R 15296254 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-897 714 chr2R 15308775 15308808 chr2R 15308854 15308886 16 78 4.0 6.0 5.0 2.7 111 chr2R 15308775 intron Trpm - chr2R 15308830 intron Trpm - chr2R 15308886 intron Trpm - chr2R_16_15305001 chr2R_15305001 RAL-897 715 chr2R 15363673 15363679 chr2R 15363750 15363759 6 79 9.0 8.0 8.5 0.6 86 chr2R 15363673 intron unc-5 + chr2R 15363716 intron unc-5 + chr2R 15363759 intron unc-5 + chr2R_6_15360001 chr2R_15360001 RAL-897 716 chr2R 15405190 15405196 chr2R 15405269 15405275 4 79 0.0 3.5 1.8 1.4 85 chr2R 15405190 intron CG43729 + chr2R 15405232 intron CG43729 + chr2R 15405275 intron CG43729 + chr2R_4_15405001 chr2R_15405001 RAL-897 717 chr2R 15645683 15645700 chr2R 15645779 15645796 4 96 4.0 0.0 2.0 1.3 113 chr2R 15645683 intron CG42524 + chr2R 15645740 intron CG42524 + chr2R 15645796 intron CG42524 + chr2R_4_15645001 chr2R_15645001 RAL-897 718 chr2R 15697895 15697920 chr2R 15697972 15698001 5 80 3.5 0.0 1.8 1.8 106 chr2R 15697895 exon CG33462 + chr2R 15697948 3` UTR CG33462 + chr2R 15698001 3` UTR CG33462 + chr2R_5_15695001 chr2R_15695001 RAL-897 719 chr2R 15833529 15833561 chr2R 15833610 15833612 7 78 6.5 4.0 5.2 1.1 83 chr2R 15833529 intron,intron tun +,Poxn - chr2R 15833570 intron,intron tun +,Poxn - chr2R 15833612 intron,intron tun +,Poxn - chr2R_7_15830001 chr2R_15830001 RAL-897 720 chr2R 15941665 15941684 chr2R 15941750 15941769 6 80 6.5 10.5 8.5 0.6 104 chr2R 15941665 intergenic CG8299 - chr2R 15941717 intergenic CG8299 - chr2R 15941769 intergenic CG8299 - chr2R_6_15940001 chr2R_15940001 RAL-897 721 chr2R 16037219 16037227 chr2R 16037305 16037310 11 87 8.5 12.5 10.5 1.0 91 chr2R 16037219 intron SP2353 + chr2R 16037264 intron SP2353 + chr2R 16037310 intron SP2353 + chr2R_11_16035001 chr2R_16035001 RAL-897 722 chr2R 16245640 16245660 chr2R 16245728 16245748 7 88 3.5 9.0 6.2 1.0 108 chr2R 16245640 intron CngA - chr2R 16245694 intron CngA - chr2R 16245748 intron CngA - chr2R_7_16245001 chr2R_16245001 RAL-897 723 chr2R 16387512 16387543 chr2R 16387989 16388024 8 480 6.5 6.5 6.5 1.1 512 chr2R 16387512 intron Sema-2b + chr2R 16387768 intron Sema-2b + chr2R 16388024 intron Sema-2b + chr2R_8_16385001 chr2R_16385001 RAL-897 724 chr2R 16489266 16489302 chr2R 16489350 16489386 8 84 2.0 3.5 2.8 2.1 120 chr2R 16489266 intergenic CG33459 + chr2R 16489326 intergenic CG33459 + chr2R 16489386 intergenic CG33459 + chr2R_8_16485001 chr2R_16485001 RAL-897 725 chr2R 16518045 16518067 chr2R 16518121 16518142 6 75 4.5 1.5 3.0 1.5 97 chr2R 16518045 intron Sema-2a + chr2R 16518094 intron Sema-2a + chr2R 16518142 intron Sema-2a + chr2R_6_16515001 chr2R_16515001 RAL-897 726 chr2R 16539638 16539658 chr2R 16544847 16544867 copia 5 5209 5.0 1.0 3.0 1.2 5229 chr2R 16539638 intergenic not near genes chr2R 16542252 intergenic not near genes chr2R 16544867 intergenic not near genes chr2R_5_16540001 chr2R_16540001 RAL-897 727 chr2R 16571872 16571896 chr2R 16571965 16571991 6 94 5.0 3.0 4.0 1.2 119 chr2R 16571872 intergenic CG4927 + chr2R 16571932 intergenic CG4927 + chr2R 16571991 intergenic CG4927 + chr2R_6_16570001 chr2R_16570001 RAL-897 728 chr2R 16586873 16586902 chr2R 16586951 16586980 8 78 4.5 3.0 3.8 1.7 107 chr2R 16586873 intergenic RpLP2 +,CG8311 - chr2R 16586926 intergenic CG8311 -,RpLP2 + chr2R 16586980 intergenic CG8311 -,RpLP2 + chr2R_8_16585001 chr2R_16585001 RAL-897 729 chr2R 16618539 16618573 chr2R 16618622 16618656 8 83 1.5 2.0 1.8 2.9 117 chr2R 16618539 intron CG5065 + chr2R 16618598 intron CG5065 + chr2R 16618656 intron CG5065 + chr2R_8_16615001 chr2R_16615001 RAL-897 730 chr2R 16732620 16732650 chr2R 16732707 16732737 8 87 3.5 3.0 3.2 1.9 117 chr2R 16732620 5` UTR CG30463 - chr2R 16732678 5` UTR CG30463 - chr2R 16732737 5` UTR CG30463 - chr2R_8_16730001 chr2R_16730001 RAL-897 731 chr2R 16740892 16740908 chr2R 16740984 16740989 5 88 3.5 6.5 5.0 0.8 97 chr2R 16740892 intergenic not near genes chr2R 16740940 intergenic not near genes chr2R 16740989 intergenic not near genes chr2R_5_16740001 chr2R_16740001 RAL-897 732 chr2R 16740909 16740922 chr2R 16740983 16741016 11 85 2.0 6.5 4.2 2.1 107 chr2R 16740909 intergenic not near genes chr2R 16740962 intergenic not near genes chr2R 16741016 intergenic not near genes chr2R_11_16740001 chr2R_16740001 RAL-897 733 chr2R 16880597 16880612 chr2R 16880672 16880679 4 74 3.5 6.0 4.8 0.7 82 chr2R 16880597 intron CG8910 - chr2R 16880638 intron CG8910 - chr2R 16880679 intron CG8910 - chr2R_4_16880001 chr2R_16880001 RAL-897 734 chr2R 16978645 16978669 chr2R 16978721 16978745 8 73 4.0 4.0 4.0 1.6 100 chr2R 16978645 intron Cbp53E + chr2R 16978695 intron Cbp53E + chr2R 16978745 intron Cbp53E + chr2R_8_16975001 chr2R_16975001 RAL-897 735 chr2R 17147242 17147271 chr2R 17152273 17152302 jockey 13 5031 6.5 5.5 6.0 1.9 5060 chr2R 17147242 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152302 intergenic not near genes chr2R_13_17145001 chr2R_17145001 RAL-897 736 chr2R 17236512 17236541 chr2R 17241716 17241743 copia 18 5203 2.5 7.0 4.8 3.1 5231 chr2R 17236512 intron mbl + chr2R 17239128 intron mbl + chr2R 17241743 intron mbl + chr2R_18_17235001 chr2R_17235001 RAL-897 737 chr2R 17459023 17459037 chr2R 17459108 17459122 4 85 2.0 2.5 2.2 1.2 99 chr2R 17459023 intron CG14478 + chr2R 17459072 intron CG14478 + chr2R 17459122 intron CG14478 + chr2R_4_17455001 chr2R_17455001 RAL-897 738 chr2R 17461290 17461316 chr2R 17461448 17461474 10 157 0.5 4.5 2.5 2.9 184 chr2R 17461290 intron CG14478 + chr2R 17461382 intron CG14478 + chr2R 17461474 intron CG14478 + chr2R_10_17460001 chr2R_17460001 RAL-897 739 chr2R 17505993 17506020 chr2R 17506069 17506096 13 75 4.5 3.5 4.0 2.6 103 chr2R 17505993 exon CG43164 + chr2R 17506044 intron CG43164 + chr2R 17506096 intron CG43164 + chr2R_13_17505001 chr2R_17505001 RAL-897 740 chr2R 17616982 17617010 chr2R 17617060 17617088 12 76 10.0 6.0 8.0 1.3 106 chr2R 17616982 intron,3` UTR CG10936 -,CG44403 - chr2R 17617035 intron,3` UTR CG10936 -,CG44403 - chr2R 17617088 intron,3` UTR CG10936 -,CG44403 - chr2R_12_17615001 chr2R_17615001 RAL-897 741 chr2R 17627752 17627782 chr2R 17628078 17628109 16 325 5.5 3.5 4.5 2.9 357 chr2R 17627752 intron CG10936 - chr2R 17627930 intron CG10936 - chr2R 17628109 intron CG10936 - chr2R_16_17625001 chr2R_17625001 RAL-897 742 chr2R 17655203 17655232 chr2R 17655280 17655292 10 68 4.0 6.0 5.0 1.7 89 chr2R 17655203 intron CCHa1-R - chr2R 17655248 intron CCHa1-R - chr2R 17655292 intron CCHa1-R - chr2R_10_17655001 chr2R_17655001 RAL-897 743 chr2R 17760665 17760700 chr2R 17760792 17760826 5 123 2.5 3.5 3.0 1.2 161 chr2R 17760665 intergenic HLH54F +,CG5009 + chr2R 17760746 intergenic CG5009 +,HLH54F + chr2R 17760826 intergenic CG5009 +,HLH54F + chr2R_5_17760001 chr2R_17760001 RAL-897 744 chr2R 17784025 17784055 chr2R 17784266 17784295 pogo 12 239 7.0 5.0 6.0 1.7 270 chr2R 17784025 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784295 intergenic mir-31a - chr2R_12_17780001 chr2R_17780001 RAL-897 745 chr2R 17885128 17885134 chr2R 17885223 17885229 4 95 2.0 3.0 2.5 1.1 101 chr2R 17885128 intron Elk + chr2R 17885178 intron Elk + chr2R 17885229 intron Elk + chr2R_4_17885001 chr2R_17885001 RAL-897 746 chr2R 17897457 17897485 chr2R 17897573 17897600 16 114 6.0 6.5 6.2 2.2 143 chr2R 17897457 intron Elk + chr2R 17897528 intron Elk + chr2R 17897600 intron Elk + chr2R_16_17895001 chr2R_17895001 RAL-897 747 chr2R 17931785 17931810 chr2R 17931920 17931945 11 135 2.5 1.5 2.0 3.7 160 chr2R 17931785 intergenic not near genes chr2R 17931865 intergenic not near genes chr2R 17931945 intergenic not near genes chr2R_11_17930001 chr2R_17930001 RAL-897 748 chr2R 17982923 17982949 chr2R 17983008 17983034 12 85 2.0 1.0 1.5 4.8 111 chr2R 17982923 intron dpr13 - chr2R 17982978 intron dpr13 - chr2R 17983034 intron dpr13 - chr2R_12_17980001 chr2R_17980001 RAL-897 749 chr2R 18045673 18045702 chr2R 18046025 18046054 jockey 4 352 0.5 1.5 1.0 2.0 381 chr2R 18045673 intergenic not near genes chr2R 18045864 intergenic not near genes chr2R 18046054 intergenic CG5767 - chr2R_4_18045001 chr2R_18045001 RAL-897 750 chr2R 18054577 18054614 chr2R 18054659 18054696 6 74 1.0 1.5 1.2 2.7 119 chr2R 18054577 intergenic CR45313 + chr2R 18054636 intergenic CR45313 + chr2R 18054696 intergenic CR45313 + chr2R_6_18050001 chr2R_18050001 RAL-897 751 chr2R 18111700 18111713 chr2R 18115543 18115581 F-element 4 3862 4.0 0.0 2.0 1.3 3881 chr2R 18111700 intergenic not near genes chr2R 18113640 intergenic not near genes chr2R 18115581 intergenic not near genes chr2R_4_18110001 chr2R_18110001 RAL-897 752 chr2R 18124340 18124375 chr2R 18124416 18124452 10 74 2.5 4.5 3.5 2.2 112 chr2R 18124340 intron stau - chr2R 18124396 intron stau - chr2R 18124452 intron stau - chr2R_10_18120001 chr2R_18120001 RAL-897 753 chr2R 18245625 18245630 chr2R 18245702 18245707 4 77 1.5 1.0 1.2 1.8 82 chr2R 18245625 intergenic not near genes chr2R 18245666 intergenic CR44420 - chr2R 18245707 intergenic CR44420 - chr2R_4_18245001 chr2R_18245001 RAL-897 754 chr2R 18289441 18289462 chr2R 18289543 18289547 11 99 2.0 7.5 4.8 1.9 106 chr2R 18289441 intron,intron sbb -,CG14502 + chr2R 18289494 intron,intron sbb -,CG14502 + chr2R 18289547 exon,intron sbb -,CG14502 + chr2R_11_18285001 chr2R_18285001 RAL-897 755 chr2R 18308298 18308317 chr2R 18308390 18308422 14 103 4.0 4.5 4.2 2.7 124 chr2R 18308298 intron sbb - chr2R 18308360 intron sbb - chr2R 18308422 intron sbb - chr2R_14_18305001 chr2R_18305001 RAL-897 756 chr2R 18408285 18408314 chr2R 18408404 18408434 19 119 6.5 6.5 6.5 2.5 149 chr2R 18408285 exon GstE8 + chr2R 18408360 exon GstE8 + chr2R 18408434 exon GstE8 + chr2R_19_18405001 chr2R_18405001 RAL-897 757 chr2R 18528204 18528222 chr2R 18528279 18528304 11 80 3.0 5.5 4.2 2.1 100 chr2R 18528204 intron CG10924 + chr2R 18528254 intron CG10924 + chr2R 18528304 intron CG10924 + chr2R_11_18525001 chr2R_18525001 RAL-897 758 chr2R 18575798 18575831 chr2R 18581984 18582019 3S18 12 6184 4.0 4.5 4.2 2.3 6221 chr2R 18575798 intron GEFmeso - chr2R 18578908 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_12_18575001 chr2R_18575001 RAL-897 759 chr2R 18590867 18590901 chr2R 18600019 18600052 roo 18 9150 4.5 6.5 5.5 2.8 9185 chr2R 18590867 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_18_18595001 chr2R_18595001 RAL-897 760 chr2R 18603784 18603803 chr2R 18603853 18603883 10 79 5.0 3.0 4.0 2.0 99 chr2R 18603784 intron GEFmeso - chr2R 18603834 intron GEFmeso - chr2R 18603883 intron GEFmeso - chr2R_10_18600001 chr2R_18600001 RAL-897 761 chr2R 18692902 18692917 chr2R 18692989 18693003 7 86 4.5 1.5 3.0 1.8 101 chr2R 18692902 intron Sik3 + chr2R 18692952 intron Sik3 + chr2R 18693003 intron Sik3 + chr2R_7_18690001 chr2R_18690001 RAL-897 762 chr2R 18778212 18778226 chr2R 18778302 18778316 6 90 4.0 4.5 4.2 1.2 104 chr2R 18778212 intergenic not near genes chr2R 18778264 intergenic not near genes chr2R 18778316 intergenic not near genes chr2R_6_18775001 chr2R_18775001 RAL-897 763 chr2R 18785914 18785947 chr2R 18785992 18786026 18 78 5.5 5.5 5.5 2.8 112 chr2R 18785914 intron CG15080 + chr2R 18785970 intron CG15080 + chr2R 18786026 intron CG15080 + chr2R_18_18785001 chr2R_18785001 RAL-897 764 chr2R 18808070 18808086 chr2R 18808152 18808175 6 86 0.0 1.5 0.8 3.3 105 chr2R 18808070 intergenic CG15096 - chr2R 18808122 intergenic CG15096 - chr2R 18808175 intergenic CG15096 - chr2R_6_18805001 chr2R_18805001 RAL-897 765 chr2R 18862311 18862408 chr2R 18862398 18862471 4 80 0.0 0.0 0.0 4.0 160 chr2R 18862311 intergenic Jheh3 - chr2R 18862391 intergenic Jheh3 -,CG43069 + chr2R 18862471 intergenic CG43069 +,Jheh3 - chr2R_4_18860001 chr2R_18860001 RAL-897 766 chr2R 18871650 18871678 chr2R 18871734 18871763 11 85 6.0 0.5 3.2 2.6 113 chr2R 18871650 intergenic not near genes chr2R 18871706 intergenic not near genes chr2R 18871763 intergenic not near genes chr2R_11_18870001 chr2R_18870001 RAL-897 767 chr2R 19010767 19010773 chr2R 19010861 19010869 5 98 5.0 7.5 6.2 0.7 102 chr2R 19010767 intergenic not near genes chr2R 19010818 intergenic not near genes chr2R 19010869 intergenic not near genes chr2R_5_19010001 chr2R_19010001 RAL-897 768 chr2R 19169561 19169566 chr2R 19169727 19169756 4 177 1.5 1.0 1.2 1.8 195 chr2R 19169561 intron CG10737 + chr2R 19169658 intron CG10737 + chr2R 19169756 intron CG10737 + chr2R_4_19165001 chr2R_19165001 RAL-897 769 chr2R 19181531 19181568 chr2R 19182033 19182070 25 504 40.5 44.5 42.5 0.6 539 chr2R 19181531 intron hppy + chr2R 19181800 intron hppy + chr2R 19182070 intron hppy + chr2R_25_19180001 chr2R_19180001 RAL-897 770 chr2R 19183348 19183375 chr2R 19183422 19183451 17 73 3.5 4.5 4.0 3.4 103 chr2R 19183348 intron hppy + chr2R 19183400 intron hppy + chr2R 19183451 intron hppy + chr2R_17_19180001 chr2R_19180001 RAL-897 771 chr2R 19283794 19283824 chr2R 19286760 19286790 5 2966 27.0 1.5 14.2 0.3 2996 chr2R 19283794 5` UTR CG11906 - chr2R 19285292 intergenic CG10476 -,CG10474 - chr2R 19286790 intergenic CG10474 - chr2R_5_19285001 chr2R_19285001 RAL-897 772 chr2R 19282932 19282958 chr2R 19285529 19285575 5 2622 40.0 5.5 22.8 0.2 2643 chr2R 19282932 exon CG11906 - chr2R 19284254 intergenic CG11906 -,CG10476 - chr2R 19285575 exon CG10474 - chr2R_5_19280001 chr2R_19280001 RAL-897 773 chr2R 19300960 19300994 chr2R 19301043 19301069 16 81 5.0 7.0 6.0 2.3 109 chr2R 19300960 intron Tab2 + chr2R 19301014 intron Tab2 + chr2R 19301069 intron Tab2 + chr2R_16_19300001 chr2R_19300001 RAL-897 774 chr2R 19334648 19334676 chr2R 19334724 19334752 13 76 6.5 4.5 5.5 2.0 104 chr2R 19334648 intron,intron Rgk1 -,CG34045 + chr2R 19334700 intron,intron Rgk1 -,CG34045 + chr2R 19334752 intron,exon Rgk1 -,CG34045 + chr2R_13_19330001 chr2R_19330001 RAL-897 775 chr2R 19582947 19582964 chr2R 19583237 19583249 9 290 4.5 10.0 7.2 1.1 302 chr2R 19582947 intron sm - chr2R 19583098 intron sm - chr2R 19583249 intron sm - chr2R_9_19580001 chr2R_19580001 RAL-897 776 chr2R 19603969 19604009 chr2R 19604058 19604076 5 79 0.5 2.0 1.2 2.3 107 chr2R 19603969 intron sm - chr2R 19604022 intron sm - chr2R 19604076 intron sm - chr2R_5_19600001 chr2R_19600001 RAL-897 777 chr2R 19774010 19774040 chr2R 19774123 19774153 10 111 3.5 2.5 3.0 2.5 143 chr2R 19774010 intergenic not near genes chr2R 19774082 intergenic not near genes chr2R 19774153 intergenic not near genes chr2R_10_19770001 chr2R_19770001 RAL-897 778 chr2R 19776594 19776630 chr2R 19779915 19779952 jockey 11 3320 3.0 3.5 3.2 2.6 3358 chr2R 19776594 intergenic not near genes chr2R 19778273 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_11_19775001 chr2R_19775001 RAL-897 779 chr2R 19807671 19807698 chr2R 19807753 19807780 9 82 4.0 5.0 4.5 1.6 109 chr2R 19807671 intergenic not near genes chr2R 19807726 intergenic not near genes chr2R 19807780 intergenic not near genes chr2R_9_19805001 chr2R_19805001 RAL-897 780 chr2R 19837717 19837747 chr2R 19837816 19837846 12 97 1.5 6.5 4.0 2.4 129 chr2R 19837717 intergenic not near genes chr2R 19837782 intergenic not near genes chr2R 19837846 intergenic not near genes chr2R_12_19835001 chr2R_19835001 RAL-897 781 chr2R 19907862 19907893 chr2R 19908008 19908038 16 143 5.5 6.0 5.8 2.4 176 chr2R 19907862 intergenic not near genes chr2R 19907950 intergenic not near genes chr2R 19908038 intergenic not near genes chr2R_16_19905001 chr2R_19905001 RAL-897 782 chr2R 19914846 19914877 chr2R 19922258 19922289 mdg1 9 7412 3.5 5.0 4.2 1.7 7443 chr2R 19914846 intergenic not near genes chr2R 19918568 intergenic not near genes chr2R 19922289 intergenic not near genes chr2R_9_19915001 chr2R_19915001 RAL-897 783 chr2R 19957431 19957461 chr2R 19962632 19962663 copia 13 5195 7.5 5.0 6.2 1.8 5232 chr2R 19957431 intergenic CG44623 + chr2R 19960047 intergenic not near genes chr2R 19962663 intergenic not near genes chr2R_13_19960001 chr2R_19960001 RAL-897 784 chr2R 19997016 19997054 chr2R 19997092 19997119 24 72 4.5 4.5 4.5 4.4 103 chr2R 19997016 intergenic not near genes chr2R 19997068 intergenic not near genes chr2R 19997119 intergenic not near genes chr2R_24_19995001 chr2R_19995001 RAL-897 785 chr2R 19997615 19997625 chr2R 19997705 19997712 5 88 4.5 2.5 3.5 1.1 97 chr2R 19997615 intergenic not near genes chr2R 19997664 intergenic not near genes chr2R 19997712 intergenic not near genes chr2R_5_19995001 chr2R_19995001 RAL-897 786 chr2R 19997627 19997639 chr2R 19997704 19997729 13 87 1.5 2.5 2.0 4.3 102 chr2R 19997627 intergenic not near genes chr2R 19997678 intergenic not near genes chr2R 19997729 intergenic not near genes chr2R_13_19995001 chr2R_19995001 RAL-897 787 chr2R 20080602 20080622 chr2R 20080678 20080699 8 76 0.0 7.0 3.5 1.8 97 chr2R 20080602 intergenic not near genes chr2R 20080650 intergenic not near genes chr2R 20080699 intergenic not near genes chr2R_8_20080001 chr2R_20080001 RAL-897 788 chr2R 20307081 20307094 chr2R 20307172 20307185 7 91 2.5 2.5 2.5 2.0 104 chr2R 20307081 intron CG11200 - chr2R 20307133 intron CG11200 - chr2R 20307185 intron CG11200 - chr2R_7_20305001 chr2R_20305001 RAL-897 789 chr2R 20382335 20382357 chr2R 20382419 20382428 12 84 4.0 1.5 2.8 3.2 93 chr2R 20382335 intergenic not near genes chr2R 20382382 intergenic not near genes chr2R 20382428 intergenic not near genes chr2R_12_20380001 chr2R_20380001 RAL-897 790 chr2R 20541986 20542020 chr2R 20542064 20542098 5 78 1.5 2.0 1.8 1.8 112 chr2R 20541986 intergenic not near genes chr2R 20542042 intergenic not near genes chr2R 20542098 intergenic not near genes chr2R_5_20540001 chr2R_20540001 RAL-897 791 chr2R 20572535 20572562 chr2R 20572635 20572661 12 99 3.5 2.5 3.0 3.0 126 chr2R 20572535 intron qsm - chr2R 20572598 intron qsm - chr2R 20572661 intron qsm - chr2R_12_20570001 chr2R_20570001 RAL-897 792 chr2R 20578678 20578685 chr2R 20578747 20578770 6 82 0.0 6.5 3.2 1.4 92 chr2R 20578678 intron qsm - chr2R 20578724 intron qsm - chr2R 20578770 intron qsm - chr2R_6_20575001 chr2R_20575001 RAL-897 793 chr2R 20739445 20739477 chr2R 20744213 20744223 F-element 10 4765 4.5 10.5 7.5 1.2 4778 chr2R 20739445 intron dpr + chr2R 20741834 intron dpr + chr2R 20744223 intron dpr + chr2R_10_20740001 chr2R_20740001 RAL-897 794 chr2R 20783311 20783333 chr2R 20788083 20788105 F-element 4 4772 2.0 5.5 3.8 0.8 4794 chr2R 20783311 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788105 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-897 795 chr2R 20833036 20833059 chr2R 20833117 20833140 12 81 4.0 6.0 5.0 2.0 104 chr2R 20833036 intron,intron insc -,sktl - chr2R 20833088 intron,intron insc -,sktl - chr2R 20833140 intron,intron insc -,sktl - chr2R_12_20830001 chr2R_20830001 RAL-897 796 chr2R 20962909 20962939 chr2R 20963007 20963037 12 98 4.0 3.0 3.5 2.7 128 chr2R 20962909 intergenic not near genes chr2R 20962973 intergenic not near genes chr2R 20963037 intergenic not near genes chr2R_12_20960001 chr2R_20960001 RAL-897 797 chr2R 21059188 21059212 chr2R 21059356 21059380 10 164 5.5 4.0 4.8 1.7 192 chr2R 21059188 3` UTR cpa + chr2R 21059284 3` UTR cpa + chr2R 21059380 3` UTR cpa + chr2R_10_21055001 chr2R_21055001 RAL-897 798 chr2R 21113480 21113486 chr2R 21113569 21113575 4 89 4.0 8.0 6.0 0.6 95 chr2R 21113480 intron ktub + chr2R 21113528 intron ktub + chr2R 21113575 intron ktub + chr2R_4_21110001 chr2R_21110001 RAL-897 799 chr2R 21117478 21117484 chr2R 21117834 21117840 4 356 4.0 3.5 3.8 0.8 362 chr2R 21117478 intron ktub + chr2R 21117659 intron ktub + chr2R 21117840 intron ktub + chr2R_4_21115001 chr2R_21115001 RAL-897 800 chr2R 21136517 21136542 chr2R 21136601 21136625 6 80 9.0 7.0 8.0 0.7 108 chr2R 21136517 intron Magi - chr2R 21136571 intron Magi - chr2R 21136625 intron Magi - chr2R_6_21135001 chr2R_21135001 RAL-897 801 chr2R 21136544 21136550 chr2R 21136599 21136608 4 66 5.5 6.5 6.0 0.6 64 chr2R 21136544 intron Magi - chr2R 21136576 intron Magi - chr2R 21136608 intron Magi - chr2R_4_21135001 chr2R_21135001 RAL-897 802 chr2R 21157749 21157768 chr2R 21157830 21157849 6 81 4.5 4.0 4.2 1.2 100 chr2R 21157749 intron CG30389 - chr2R 21157799 intron CG30389 - chr2R 21157849 intron CG30389 - chr2R_6_21155001 chr2R_21155001 RAL-897 803 chr2R 21201416 21201443 chr2R 21201559 21201585 7 141 3.5 8.0 5.8 1.0 169 chr2R 21201416 intron,intron CG44245 +,Glycogenin + chr2R 21201500 intron,intron CG44245 +,Glycogenin + chr2R 21201585 intron,intron CG44245 +,Glycogenin + chr2R_7_21200001 chr2R_21200001 RAL-897 804 chr2R 21215542 21215560 chr2R 21216027 21216036 5 483 2.5 6.5 4.5 0.9 494 chr2R 21215542 exon CG15661 - chr2R 21215789 exon CG15661 - chr2R 21216036 exon CG15661 - chr2R_5_21215001 chr2R_21215001 RAL-897 805 chr2R 21217323 21217334 chr2R 21217410 21217421 5 87 0.0 0.0 0.0 5.0 98 chr2R 21217323 exon CG15661 - chr2R 21217372 5` UTR CG15661 - chr2R 21217421 5` UTR CG15661 - chr2R_5_21215001 chr2R_21215001 RAL-897 806 chr2R 21238946 21238960 chr2R 21239016 21239044 6 81 8.0 4.5 6.2 0.8 98 chr2R 21238946 intron ASPP - chr2R 21238995 intron ASPP - chr2R 21239044 intron ASPP - chr2R_6_21235001 chr2R_21235001 RAL-897 807 chr2R 21265863 21265958 chr2R 21267150 21267263 7 1304 31.0 27.0 29.0 0.2 1400 chr2R 21265863 intron,exon Rgk3 +,CG30391 - chr2R 21266563 intron,exon Rgk3 +,CG30393 - chr2R 21267263 intron,exon Rgk3 +,CG30393 - chr2R_7_21265001 chr2R_21265001 RAL-897 808 chr2R 21381509 21381540 chr2R 21381597 21381627 16 86 5.0 7.0 6.0 2.3 118 chr2R 21381509 intergenic not near genes chr2R 21381568 intergenic not near genes chr2R 21381627 intergenic not near genes chr2R_16_21380001 chr2R_21380001 RAL-897 809 chr2R 21388007 21388029 chr2R 21393879 21393908 11 5873 47.5 27.0 37.2 0.3 5901 chr2R 21388007 exon Acox57D-p + chr2R 21390958 exon Acox57D-d + chr2R 21393908 3` UTR Sdc - chr2R_11_21390001 chr2R_21390001 RAL-897 810 chr2R 21410079 21410106 chr2R 21410158 21410185 12 78 2.0 0.0 1.0 6.0 106 chr2R 21410079 intron Sdc - chr2R 21410132 intron Sdc - chr2R 21410185 intron Sdc - chr2R_12_21410001 chr2R_21410001 RAL-897 811 chr2R 21472313 21472339 chr2R 21472391 21472416 13 75 2.5 5.5 4.0 2.6 103 chr2R 21472313 intron Sdc - chr2R 21472364 intron Sdc - chr2R 21472416 intron Sdc - chr2R_13_21470001 chr2R_21470001 RAL-897 812 chr2R 21505765 21505794 chr2R 21505846 21505874 11 80 3.0 6.0 4.5 2.0 109 chr2R 21505765 intron MESK2 + chr2R 21505820 intron MESK2 + chr2R 21505874 intron MESK2 + chr2R_11_21505001 chr2R_21505001 RAL-897 813 chr2R 21688870 21688897 chr2R 21688945 21688973 15 73 2.0 3.0 2.5 4.3 103 chr2R 21688870 5` UTR CG10307 + chr2R 21688922 5` UTR CG10307 + chr2R 21688973 5` UTR CG10307 + chr2R_15_21685001 chr2R_21685001 RAL-897 814 chr2R 21708162 21708199 chr2R 21709964 21710001 9 1802 10.0 8.5 9.2 0.9 1839 chr2R 21708162 intron HmgD + chr2R 21709082 intron,3` UTR HmgD +,CR44749 - chr2R 21710001 intron,3` UTR HmgD +,CG30403 - chr2R_9_21705001 chr2R_21705001 RAL-897 815 chr2R 21721583 21721596 chr2R 21721667 21721667 4 78 4.0 0.0 2.0 1.3 84 chr2R 21721583 intron LBR + chr2R 21721625 intron LBR + chr2R 21721667 intron LBR + chr2R_4_21720001 chr2R_21720001 RAL-897 816 chr2R 21738276 21738308 chr2R 21747436 21747467 roo 10 9152 3.0 7.5 5.2 1.6 9191 chr2R 21738276 intergenic not near genes chr2R 21742872 intergenic not near genes chr2R 21747467 intergenic not near genes chr2R_10_21740001 chr2R_21740001 RAL-897 817 chr2R 21753086 21753109 chr2R 21753571 21753577 roo 14 482 8.0 4.5 6.2 1.9 491 chr2R 21753086 intergenic not near genes chr2R 21753332 intergenic not near genes chr2R 21753577 intergenic not near genes chr2R_14_21750001 chr2R_21750001 RAL-897 818 chr2R 21759568 21759591 chr2R 21759647 21759678 13 81 5.5 5.5 5.5 2.0 110 chr2R 21759568 intergenic not near genes chr2R 21759623 intergenic not near genes chr2R 21759678 intergenic not near genes chr2R_13_21755001 chr2R_21755001 RAL-897 819 chr2R 21777276 21777292 chr2R 21777350 21777374 7 79 7.5 5.0 6.2 1.0 98 chr2R 21777276 intergenic not near genes chr2R 21777325 intergenic not near genes chr2R 21777374 intergenic not near genes chr2R_7_21775001 chr2R_21775001 RAL-897 820 chr2R 21783561 21783571 chr2R 21783666 21783676 4 105 7.0 3.0 5.0 0.7 115 chr2R 21783561 intergenic not near genes chr2R 21783618 intergenic not near genes chr2R 21783676 intergenic not near genes chr2R_4_21780001 chr2R_21780001 RAL-897 821 chr2R 21809528 21809557 chr2R 21817768 21817797 roo 12 8239 4.0 5.5 4.8 2.1 8269 chr2R 21809528 intergenic not near genes chr2R 21813662 intergenic not near genes chr2R 21817797 intergenic not near genes chr2R_12_21810001 chr2R_21810001 RAL-897 822 chr2R 21841475 21841508 chr2R 21841560 21841592 14 85 0.5 2.0 1.2 6.4 117 chr2R 21841475 intergenic not near genes chr2R 21841534 intergenic not near genes chr2R 21841592 intergenic not near genes chr2R_14_21840001 chr2R_21840001 RAL-897 823 chr2R 21906272 21906302 chr2R 21906373 21906401 8 101 1.5 2.5 2.0 2.7 129 chr2R 21906272 intron Fili + chr2R 21906336 intron Fili + chr2R 21906401 intron Fili + chr2R_8_21905001 chr2R_21905001 RAL-897 824 chr2R 22035541 22035574 chr2R 22035628 22035661 15 86 3.0 7.5 5.2 2.4 120 chr2R 22035541 intron,3` UTR CG34370 -,CG9308 + chr2R 22035601 intron,3` UTR CG34370 -,CG9308 + chr2R 22035661 intron,3` UTR CG34370 -,CG9308 + chr2R_15_22035001 chr2R_22035001 RAL-897 825 chr2R 22040157 22040182 chr2R 22040237 22040258 10 77 5.5 8.5 7.0 1.2 101 chr2R 22040157 intergenic not near genes chr2R 22040208 intergenic not near genes chr2R 22040258 intergenic not near genes chr2R_10_22040001 chr2R_22040001 RAL-897 826 chr2R 22095039 22095071 chr2R 22095124 22095133 9 82 2.0 5.0 3.5 2.0 94 chr2R 22095039 intron CG11073 - chr2R 22095086 intron CG11073 - chr2R 22095133 intron CG11073 - chr2R_9_22095001 chr2R_22095001 RAL-897 827 chr2R 22124306 22124332 chr2R 22124395 22124417 9 88 2.0 2.0 2.0 3.0 111 chr2R 22124306 3` UTR mei-S332 + chr2R 22124362 3` UTR mei-S332 + chr2R 22124417 intergenic mei-S332 +,GM130 - chr2R_9_22120001 chr2R_22120001 RAL-897 828 chr2R 22179221 22179234 chr2R 22179304 22179317 8 82 1.0 5.0 3.0 2.0 96 chr2R 22179221 intron CG11170 - chr2R 22179269 intron CG11170 - chr2R 22179317 intron CG11170 - chr2R_8_22175001 chr2R_22175001 RAL-897 829 chr2R 22185674 22185709 chr2R 22185772 22185808 10 99 2.0 0.0 1.0 5.0 134 chr2R 22185674 3` UTR MED16 + chr2R 22185741 3` UTR MED16 + chr2R 22185808 3` UTR MED16 + chr2R_10_22185001 chr2R_22185001 RAL-897 830 chr2R 22290085 22290106 chr2R 22290169 22290190 8 84 2.5 2.0 2.2 2.5 105 chr2R 22290085 intergenic not near genes chr2R 22290138 intergenic not near genes chr2R 22290190 intergenic not near genes chr2R_8_22290001 chr2R_22290001 RAL-897 831 chr2R 22349690 22349705 chr2R 22351474 22351489 jockey 6 1784 11.0 5.0 8.0 0.7 1799 chr2R 22349690 intron Liprin-gamma - chr2R 22350590 intron Liprin-gamma - chr2R 22351489 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-897 832 chr2R 22349708 22349725 chr2R 22351472 22351485 jockey 6 1772 4.5 5.0 4.8 1.0 1777 chr2R 22349708 intron Liprin-gamma - chr2R 22350596 intron Liprin-gamma - chr2R 22351485 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-897 833 chr2R 22360380 22360398 chr2R 22360813 22360831 jockey 9 432 9.5 6.0 7.8 1.0 451 chr2R 22360380 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360831 intron Liprin-gamma - chr2R_9_22360001 chr2R_22360001 RAL-897 834 chr2R 22456118 22456150 chr2R 22456198 22456223 19 77 2.5 5.0 3.8 4.0 105 chr2R 22456118 intron CG10384 + chr2R 22456170 intron CG10384 + chr2R 22456223 intron CG10384 + chr2R_19_22455001 chr2R_22455001 RAL-897 835 chr2R 22525754 22525769 chr2R 22529302 22529324 jockey 4 3553 3.5 7.0 5.2 0.6 3570 chr2R 22525754 intron px - chr2R 22527539 intron px - chr2R 22529324 intron px - chr2R_4_22525001 chr2R_22525001 RAL-897 836 chr2R 22525770 22525786 chr2R 22529300 22529334 jockey 4 3545 1.0 7.0 4.0 0.8 3564 chr2R 22525770 intron px - chr2R 22527552 intron px - chr2R 22529334 intron px - chr2R_4_22525001 chr2R_22525001 RAL-897 837 chr2R 22596949 22596978 chr2R 22597522 22597548 11 569 4.0 5.0 4.5 2.0 599 chr2R 22596949 3` UTR CR45328 - chr2R 22597248 5` UTR CG4269 + chr2R 22597548 5` UTR CG4269 + chr2R_11_22595001 chr2R_22595001 RAL-897 838 chr2R 22723243 22723263 chr2R 22723319 22723339 4 76 2.0 5.5 3.8 0.8 96 chr2R 22723243 intron jbug - chr2R 22723291 intron jbug - chr2R 22723339 intron jbug - chr2R_4_22720001 chr2R_22720001 RAL-897 839 chr2R 22754072 22754082 chr2R 22754157 22754166 6 84 6.0 5.5 5.8 0.9 94 chr2R 22754072 intron CG42260 - chr2R 22754119 intron CG42260 - chr2R 22754166 intron CG42260 - chr2R_6_22750001 chr2R_22750001 RAL-897 840 chr2R 22767566 22767601 chr2R 22767651 22767686 13 85 3.5 5.5 4.5 2.4 120 chr2R 22767566 intron CG42260 - chr2R 22767626 intron CG42260 - chr2R 22767686 intron CG42260 - chr2R_13_22765001 chr2R_22765001 RAL-897 841 chr2R 22774959 22774998 chr2R 22775378 22775417 jockey 20 418 3.5 6.0 4.8 3.4 458 chr2R 22774959 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775417 intron CG42260 - chr2R_20_22775001 chr2R_22775001 RAL-897 842 chr2R 22785729 22785760 chr2R 22785807 22785838 6 78 1.5 0.5 1.0 3.0 109 chr2R 22785729 intron CG42260 - chr2R 22785784 intron CG42260 - chr2R 22785838 intron CG42260 - chr2R_6_22785001 chr2R_22785001 RAL-897 843 chr2R 22907402 22907435 chr2R 22907495 22907524 12 87 6.0 6.5 6.2 1.7 122 chr2R 22907402 intron nahoda + chr2R 22907463 intron nahoda + chr2R 22907524 intron nahoda + chr2R_12_22905001 chr2R_22905001 RAL-897 844 chr2R 22957053 22957060 chr2R 22957132 22957139 6 78 4.5 1.5 3.0 1.5 86 chr2R 22957053 intergenic CR44780 - chr2R 22957096 intergenic CR44780 - chr2R 22957139 intergenic CR44780 - chr2R_6_22955001 chr2R_22955001 RAL-897 845 chr2R 22988311 22988322 chr2R 22988392 22988403 5 81 7.0 6.0 6.5 0.7 92 chr2R 22988311 intron twi + chr2R 22988357 intron twi + chr2R 22988403 intron twi + chr2R_5_22985001 chr2R_22985001 RAL-897 846 chr2R 22991630 22991658 chr2R 22991721 22991747 10 90 4.0 5.0 4.5 1.8 117 chr2R 22991630 intron twi + chr2R 22991688 intron twi + chr2R 22991747 intron twi + chr2R_10_22990001 chr2R_22990001 RAL-897 847 chr2R 23037269 23037302 chr2R 23037345 23037366 16 74 6.0 6.0 6.0 2.3 97 chr2R 23037269 intron,intron twi +,CG42741 - chr2R 23037318 intron,intron twi +,CG42741 - chr2R 23037366 intron,intron twi +,CG42741 - chr2R_16_23035001 chr2R_23035001 RAL-897 848 chr2R 23052661 23052684 chr2R 23052725 23052760 7 74 5.0 2.5 3.8 1.5 99 chr2R 23052661 intergenic not near genes chr2R 23052710 intergenic not near genes chr2R 23052760 intergenic not near genes chr2R_7_23050001 chr2R_23050001 RAL-897 849 chr2R 23175038 23175068 chr2R 23175115 23175144 16 76 3.5 6.0 4.8 2.8 106 chr2R 23175038 intron CG34371 - chr2R 23175091 intron CG34371 - chr2R 23175144 intron CG34371 - chr2R_16_23175001 chr2R_23175001 RAL-897 850 chr2R 23184288 23184296 chr2R 23184369 23184381 4 84 0.5 7.0 3.8 0.8 93 chr2R 23184288 intron,intron CG34371 -,CG13539 + chr2R 23184334 intron,intron CG34371 -,CG13539 + chr2R 23184381 intron,intron CG34371 -,CG13539 + chr2R_4_23180001 chr2R_23180001 RAL-897 851 chr2R 23186571 23186607 chr2R 23186649 23186661 21 76 2.5 4.0 3.2 5.0 90 chr2R 23186571 intron CG34371 - chr2R 23186616 intron CG34371 - chr2R 23186661 intron CG34371 - chr2R_21_23185001 chr2R_23185001 RAL-897 852 chr2R 23188563 23188590 chr2R 23188632 23188668 6 76 2.5 4.0 3.2 1.4 105 chr2R 23188563 intron CG34371 - chr2R 23188616 intron CG34371 - chr2R 23188668 intron CG34371 - chr2R_6_23185001 chr2R_23185001 RAL-897 853 chr2R 23257506 23257533 chr2R 23257589 23257616 10 81 3.0 4.0 3.5 2.2 110 chr2R 23257506 intergenic not near genes chr2R 23257561 intergenic not near genes chr2R 23257616 intergenic not near genes chr2R_10_23255001 chr2R_23255001 RAL-897 854 chr2R 23487448 23487479 chr2R 23487530 23487561 12 78 5.5 2.5 4.0 2.4 113 chr2R 23487448 intron CG43795 + chr2R 23487504 intron CG43795 + chr2R 23487561 intron CG43795 + chr2R_12_23485001 chr2R_23485001 RAL-897 855 chr2R 23529574 23529607 chr2R 23537148 23537163 412 9 7569 6.0 4.0 5.0 1.5 7589 chr2R 23529574 intron bw - chr2R 23533368 intron bw - chr2R 23537163 exon bw - chr2R_9_23530001 chr2R_23530001 RAL-897 856 chr2R 23635699 23635723 chr2R 23635775 23635785 15 72 1.0 1.5 1.2 6.8 86 chr2R 23635699 intron retn + chr2R 23635742 intron retn + chr2R 23635785 intron retn + chr2R_15_23635001 chr2R_23635001 RAL-897 857 chr2R 23674182 23674184 chr2R 23674262 23674264 5 80 13.0 9.5 11.2 0.4 82 chr2R 23674182 intron Pde8 + chr2R 23674223 intron Pde8 + chr2R 23674264 intron Pde8 + chr2R_5_23670001 chr2R_23670001 RAL-897 858 chr2R 23674185 23674186 chr2R 23674261 23674266 4 79 12.5 9.0 10.8 0.3 81 chr2R 23674185 intron Pde8 + chr2R 23674226 intron Pde8 + chr2R 23674266 intron Pde8 + chr2R_4_23670001 chr2R_23670001 RAL-897 859 chr2R 23744763 23744794 chr2R 23744842 23744873 14 78 7.0 8.0 7.5 1.6 110 chr2R 23744763 intron egl - chr2R 23744818 intron egl - chr2R 23744873 intron egl - chr2R_14_23740001 chr2R_23740001 RAL-897 860 chr2R 23777591 23777626 chr2R 23777666 23777702 21 75 5.0 5.5 5.2 3.4 111 chr2R 23777591 intron CG9850 - chr2R 23777646 intron CG9850 - chr2R 23777702 intron CG9850 - chr2R_21_23775001 chr2R_23775001 RAL-897 861 chr2R 23783969 23784005 chr2R 23784348 23784384 15 378 3.0 1.5 2.2 4.7 415 chr2R 23783969 intron CG9850 - chr2R 23784176 intron CG9850 - chr2R 23784384 intron CG9850 - chr2R_15_23780001 chr2R_23780001 RAL-897 862 chr2R 23784474 23784503 chr2R 23784551 23784579 13 76 4.5 3.0 3.8 2.7 105 chr2R 23784474 intron CG9850 - chr2R 23784526 intron CG9850 - chr2R 23784579 intron CG9850 - chr2R_13_23780001 chr2R_23780001 RAL-897 863 chr2R 23911123 23911143 chr2R 23911218 23911239 6 96 12.0 4.0 8.0 0.7 116 chr2R 23911123 intron kcc + chr2R 23911181 intron kcc + chr2R 23911239 intron kcc + chr2R_6_23910001 chr2R_23910001 RAL-897 864 chr2R 23911144 23911152 chr2R 23911217 23911248 11 92 9.0 4.0 6.5 1.5 104 chr2R 23911144 intron kcc + chr2R 23911196 intron kcc + chr2R 23911248 intron kcc + chr2R_11_23910001 chr2R_23910001 RAL-897 865 chr2R 23914312 23914332 chr2R 23921921 23921946 412 18 7615 2.5 6.5 4.5 3.3 7634 chr2R 23914312 exon kcc + chr2R 23918129 intron kcc + chr2R 23921946 intron kcc + chr2R_18_23915001 chr2R_23915001 RAL-897 866 chr2R 23986528 23986549 chr2R 23986599 23986629 7 79 2.0 4.5 3.2 1.7 101 chr2R 23986528 intron Phm - chr2R 23986578 intron Phm - chr2R 23986629 intron,5` UTR Phm -,CG30178 + chr2R_7_23985001 chr2R_23985001 RAL-897 867 chr2R 24031396 24031405 chr2R 24031480 24031489 5 84 2.5 6.0 4.2 1.0 93 chr2R 24031396 5` UTR CG30172 - chr2R 24031442 intergenic CG30172 -,Chi - chr2R 24031489 intergenic Chi -,CG30172 - chr2R_5_24030001 chr2R_24030001 RAL-897 868 chr2R 24159180 24159211 chr2R 24159261 24159287 22 79 3.5 4.0 3.8 4.6 107 chr2R 24159180 5` UTR,exon CG42568 -,DnaJ-60 - chr2R 24159234 5` UTR,5` UTR CG42568 -,DnaJ-60 - chr2R 24159287 5` UTR,5` UTR CG42568 -,DnaJ-60 - chr2R_22_24155001 chr2R_24155001 RAL-897 869 chr2R 24177235 24177256 chr2R 24184720 24184741 412 7 7485 6.0 2.5 4.2 1.3 7506 chr2R 24177235 3` UTR Nop60B + chr2R 24180988 intron Nop60B + chr2R 24184741 3` UTR Nop60B + chr2R_7_24180001 chr2R_24180001 RAL-897 870 chr2R 24320183 24320202 chr2R 24320283 24320305 4 101 3.5 5.0 4.2 0.8 122 chr2R 24320183 intergenic not near genes chr2R 24320244 intergenic not near genes chr2R 24320305 intergenic not near genes chr2R_4_24320001 chr2R_24320001 RAL-897 871 chr2R 24353426 24353461 chr2R 24361788 24361822 roo 4 8362 3.5 0.0 1.8 1.4 8396 chr2R 24353426 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361822 intron,intron bs +,CR44811 - chr2R_4_24355001 chr2R_24355001 RAL-897 872 chr2R 24383825 24383858 chr2R 24383906 24383920 13 79 2.0 5.5 3.8 2.7 95 chr2R 24383825 intron mAChR-A - chr2R 24383872 intron mAChR-A - chr2R 24383920 intron mAChR-A - chr2R_13_24380001 chr2R_24380001 RAL-897 873 chr2R 24590094 24590144 chr2R 24590202 24590234 8 96 0.0 5.5 2.8 2.1 140 chr2R 24590094 intron pio + chr2R 24590164 intron pio + chr2R 24590234 intron pio + chr2R_8_24590001 chr2R_24590001 RAL-897 874 chr2R 24636904 24636930 chr2R 24636989 24637016 11 86 3.5 0.0 1.8 3.9 112 chr2R 24636904 intron CG13594 - chr2R 24636960 intron CG13594 - chr2R 24637016 intron CG13594 - chr2R_11_24635001 chr2R_24635001 RAL-897 875 chr2R 24647587 24647618 chr2R 24655144 24655145 412 22 7554 6.5 6.0 6.2 3.1 7558 chr2R 24647587 intergenic not near genes chr2R 24651366 intergenic not near genes chr2R 24655145 intergenic not near genes chr2R_22_24650001 chr2R_24650001 RAL-897 876 chr2R 24719797 24719825 chr2R 24719908 24719937 9 106 7.0 8.0 7.5 1.1 140 chr2R 24719797 intron Mid1 - chr2R 24719867 intron Mid1 - chr2R 24719937 intron Mid1 - chr2R_9_24715001 chr2R_24715001 RAL-897 877 chr2R 24727887 24727907 chr2R 24735390 24735394 mdg1 9 7503 2.5 7.0 4.8 1.6 7507 chr2R 24727887 intron Mid1 - chr2R 24731640 intron Mid1 - chr2R 24735394 intron Mid1 - chr2R_9_24730001 chr2R_24730001 RAL-897 878 chr2R 24763609 24763641 chr2R 24765585 24765588 G2 13 1969 6.0 9.0 7.5 1.5 1979 chr2R 24763609 exon CG3894 + chr2R 24764598 intron CG3894 + chr2R 24765588 exon CG3894 + chr2R_13_24760001 chr2R_24760001 RAL-897 879 chr2R 24859839 24859864 chr2R 24859925 24859949 12 84 4.0 3.5 3.8 2.5 110 chr2R 24859839 5` UTR CR44829 + chr2R 24859894 5` UTR CR44829 + chr2R 24859949 5` UTR CR44829 + chr2R_12_24855001 chr2R_24855001 RAL-897 880 chr2R 24884051 24884078 chr2R 24884133 24884160 6 78 3.5 2.5 3.0 1.5 109 chr2R 24884051 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884160 intron NKAIN + chr2R_6_24880001 chr2R_24880001 RAL-897 881 chr2R 25014545 25014559 chr2R 25014621 25014635 10 75 6.0 2.0 4.0 2.0 90 chr2R 25014545 intron uzip + chr2R 25014590 intron uzip + chr2R 25014635 intron uzip + chr2R_10_25010001 chr2R_25010001 RAL-897 882 chr2R 25014561 25014576 chr2R 25014620 25014652 13 71 1.5 2.0 1.8 4.6 91 chr2R 25014561 intron uzip + chr2R 25014606 intron uzip + chr2R 25014652 intron uzip + chr2R_13_25010001 chr2R_25010001 RAL-897 883 chr2R 25018338 25018374 chr2R 25018439 25018457 14 98 3.0 4.5 3.8 2.9 119 chr2R 25018338 intron uzip + chr2R 25018398 intron uzip + chr2R 25018457 intron uzip + chr2R_14_25015001 chr2R_25015001 RAL-897 884 chr2R 25022646 25022667 chr2R 25022730 25022751 4 84 3.0 5.0 4.0 0.8 105 chr2R 25022646 intron uzip + chr2R 25022698 intron uzip + chr2R 25022751 intron uzip + chr2R_4_25020001 chr2R_25020001 RAL-897 885 chr2R 25049487 25049497 chr2R 25049720 25049732 4 233 8.5 6.5 7.5 0.5 245 chr2R 25049487 intron gsb-n - chr2R 25049610 intron gsb-n - chr2R 25049732 intron gsb-n - chr2R_4_25045001 chr2R_25045001 RAL-897 886 chr2R 25081607 25081636 chr2R 25082701 25082732 16 1093 3.0 4.5 3.8 3.3 1125 chr2R 25081607 intron gol - chr2R 25082170 intron gol - chr2R 25082732 intron gol - chr2R_16_25080001 chr2R_25080001 RAL-897 887 chr2R 25101275 25101306 chr2R 25101377 25101408 8 101 5.0 3.5 4.2 1.5 133 chr2R 25101275 intron lov - chr2R 25101342 intron lov - chr2R 25101408 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-897 888 chr2R 25104775 25104808 chr2R 25104900 25104931 12 124 5.0 4.5 4.8 2.1 156 chr2R 25104775 intron lov - chr2R 25104853 intron lov - chr2R 25104931 intron lov - chr2R_12_25100001 chr2R_25100001 RAL-897 889 chr2R 25141668 25141683 chr2R 25159343 25159373 roo 5 17686 3.0 1.5 2.2 1.6 17705 chr2R 25141668 intergenic not near genes chr2R 25150520 intergenic not near genes chr2R 25159373 intergenic not near genes chr2R_5_25150001 chr2R_25150001 RAL-897 890 chr2R 25253444 25253471 chr2R 25253520 25253547 10 76 2.5 1.5 2.0 3.3 103 chr2R 25253444 intron,intron CG9380 -,CG30428 + chr2R 25253496 intron,intron CG9380 -,CG30428 + chr2R 25253547 intron,intron CG9380 -,CG30428 + chr2R_10_25250001 chr2R_25250001 RAL-897 891 chr3L 51384 51417 chr3L 51481 51515 13 97 6.0 5.0 5.5 2.0 131 chr3L 51384 intergenic not near genes chr3L 51450 intergenic not near genes chr3L 51515 intergenic not near genes chr3L_13_50001 chr3L_50001 RAL-897 892 chr3L 110212 110243 chr3L 119378 119410 roo 10 9167 2.0 2.0 2.0 3.3 9198 chr3L 110212 intergenic not near genes chr3L 114811 intergenic not near genes chr3L 119410 intergenic not near genes chr3L_10_110001 chr3L_110001 RAL-897 893 chr3L 155782 155807 chr3L 155859 155884 15 77 3.5 3.5 3.5 3.3 102 chr3L 155782 intron p130CAS + chr3L 155833 intron p130CAS + chr3L 155884 intron p130CAS + chr3L_15_155001 chr3L_155001 RAL-897 894 chr3L 365534 365548 chr3L 365613 365634 4 84 2.5 3.5 3.0 1.0 100 chr3L 365534 3` UTR CG1233 + chr3L 365584 3` UTR CG1233 + chr3L 365634 3` UTR CG1233 + chr3L_4_365001 chr3L_365001 RAL-897 895 chr3L 390958 390986 chr3L 391062 391091 16 105 5.0 2.0 3.5 3.6 133 chr3L 390958 intron trh - chr3L 391024 intron trh - chr3L 391091 intron trh - chr3L_16_390001 chr3L_390001 RAL-897 896 chr3L 402692 402712 chr3L 409743 409765 297 6 7051 6.0 6.0 6.0 0.9 7073 chr3L 402692 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409765 intergenic not near genes chr3L_6_405001 chr3L_405001 RAL-897 897 chr3L 477065 477101 chr3L 477149 477185 12 84 2.5 5.5 4.0 2.4 120 chr3L 477065 intron klar - chr3L 477125 intron klar - chr3L 477185 intron klar - chr3L_12_475001 chr3L_475001 RAL-897 898 chr3L 559525 559549 chr3L 559911 559933 15 386 8.5 2.5 5.5 2.3 408 chr3L 559525 intron hipk + chr3L 559729 intron hipk + chr3L 559933 intron hipk + chr3L_15_555001 chr3L_555001 RAL-897 899 chr3L 651389 651423 chr3L 651477 651511 14 88 3.5 6.5 5.0 2.3 122 chr3L 651389 intergenic Gale +,CG3402 - chr3L 651450 intergenic CG3402 -,Gale + chr3L 651511 intergenic CG3402 -,Gale + chr3L_14_650001 chr3L_650001 RAL-897 900 chr3L 705902 705935 chr3L 705998 706031 8 95 5.0 2.5 3.8 1.7 129 chr3L 705902 intergenic CG13895 -,CR44514 + chr3L 705966 3` UTR CG13895 - chr3L 706031 3` UTR CG13895 - chr3L_8_705001 chr3L_705001 RAL-897 901 chr3L 732822 732845 chr3L 733044 733050 7 219 2.5 4.5 3.5 1.6 228 chr3L 732822 intergenic not near genes chr3L 732936 intergenic not near genes chr3L 733050 intergenic not near genes chr3L_7_730001 chr3L_730001 RAL-897 902 chr3L 746498 746526 chr3L 746582 746611 10 84 7.0 5.5 6.2 1.4 113 chr3L 746498 intron hng3 - chr3L 746554 intron hng3 - chr3L 746611 intron hng3 - chr3L_10_745001 chr3L_745001 RAL-897 903 chr3L 789913 789946 chr3L 790398 790428 roo 9 485 2.0 5.0 3.5 2.0 515 chr3L 789913 intergenic not near genes chr3L 790170 intergenic not near genes chr3L 790428 intergenic not near genes chr3L_9_790001 chr3L_790001 RAL-897 904 chr3L 858000 858027 chr3L 866480 866498 Tirant 13 8471 5.0 3.5 4.2 2.5 8498 chr3L 858000 intergenic not near genes chr3L 862249 intergenic not near genes chr3L 866498 intergenic CG12502 + chr3L_13_860001 chr3L_860001 RAL-897 905 chr3L 922172 922181 chr3L 922247 922258 6 75 13.5 2.0 7.8 0.7 86 chr3L 922172 intron Glut1 + chr3L 922215 intron Glut1 + chr3L 922258 intron Glut1 + chr3L_6_920001 chr3L_920001 RAL-897 906 chr3L 925175 925209 chr3L 932601 932634 mdg1 16 7423 4.0 2.5 3.2 3.8 7459 chr3L 925175 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932634 intron Glut1 + chr3L_16_925001 chr3L_925001 RAL-897 907 chr3L 933885 933906 chr3L 934007 934037 5 130 0.0 3.0 1.5 2.0 152 chr3L 933885 intron Glut1 + chr3L 933961 intron Glut1 + chr3L 934037 intron Glut1 + chr3L_5_930001 chr3L_930001 RAL-897 908 chr3L 939774 939790 chr3L 940895 940911 jockey 7 1120 8.5 3.5 6.0 1.0 1137 chr3L 939774 intron Glut1 + chr3L 940342 intron Glut1 + chr3L 940911 intron Glut1 + chr3L_7_940001 chr3L_940001 RAL-897 909 chr3L 1015137 1015163 chr3L 1015224 1015244 4 83 4.5 6.0 5.2 0.6 107 chr3L 1015137 intron trio - chr3L 1015190 intron trio - chr3L 1015244 intron trio - chr3L_4_1015001 chr3L_1015001 RAL-897 910 chr3L 1045549 1045583 chr3L 1045648 1045682 16 97 2.5 7.0 4.8 2.8 133 chr3L 1045549 intron bab1 - chr3L 1045616 intron bab1 - chr3L 1045682 intron bab1 - chr3L_16_1045001 chr3L_1045001 RAL-897 911 chr3L 1061166 1061179 chr3L 1061245 1061258 9 77 11.5 3.5 7.5 1.1 92 chr3L 1061166 intron bab1 - chr3L 1061212 intron bab1 - chr3L 1061258 intron bab1 - chr3L_9_1060001 chr3L_1060001 RAL-897 912 chr3L 1109635 1109667 chr3L 1109723 1109755 19 87 6.5 4.0 5.2 3.1 120 chr3L 1109635 intergenic not near genes chr3L 1109695 intergenic not near genes chr3L 1109755 intergenic not near genes chr3L_19_1105001 chr3L_1105001 RAL-897 913 chr3L 1154131 1154162 chr3L 1163281 1163312 roo 15 9149 6.0 5.0 5.5 2.3 9181 chr3L 1154131 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163312 intron bab2 - chr3L_15_1155001 chr3L_1155001 RAL-897 914 chr3L 1189626 1189657 chr3L 1189712 1189743 13 85 2.5 7.0 4.8 2.2 117 chr3L 1189626 5` UTR CG13912 + chr3L 1189684 5` UTR CG13912 + chr3L 1189743 5` UTR CG13912 + chr3L_13_1185001 chr3L_1185001 RAL-897 915 chr3L 1219603 1219622 chr3L 1227333 1227355 412 11 7731 5.5 6.5 6.0 1.6 7752 chr3L 1219603 intron mwh + chr3L 1223479 intron mwh + chr3L 1227355 intron mwh + chr3L_11_1220001 chr3L_1220001 RAL-897 916 chr3L 1310983 1311008 chr3L 1315843 1315870 14 4864 57.0 50.0 53.5 0.3 4887 chr3L 1310983 exon CG2469 + chr3L 1313426 intergenic CG9186 -,CG9153 + chr3L 1315870 exon CG9153 + chr3L_14_1310001 chr3L_1310001 RAL-897 917 chr3L 1347160 1347193 chr3L 1347245 1347263 13 78 3.5 7.5 5.5 2.0 103 chr3L 1347160 intron Ptp61F - chr3L 1347212 intron Ptp61F - chr3L 1347263 intron Ptp61F - chr3L_13_1345001 chr3L_1345001 RAL-897 918 chr3L 1364050 1364064 chr3L 1364136 1364148 8 85 0.0 5.5 2.8 2.1 98 chr3L 1364050 intron Ptp61F - chr3L 1364099 intron Ptp61F - chr3L 1364148 intron Ptp61F - chr3L_8_1360001 chr3L_1360001 RAL-897 919 chr3L 1415777 1415807 chr3L 1415856 1415888 13 81 3.5 4.0 3.8 2.7 111 chr3L 1415777 intron Ptp61F - chr3L 1415832 intron Ptp61F - chr3L 1415888 intron Ptp61F - chr3L_13_1415001 chr3L_1415001 RAL-897 920 chr3L 1454235 1454271 chr3L 1454312 1454348 15 77 4.5 4.5 4.5 2.7 113 chr3L 1454235 intron Ptp61F - chr3L 1454292 intron Ptp61F - chr3L 1454348 intron Ptp61F - chr3L_15_1450001 chr3L_1450001 RAL-897 921 chr3L 1505998 1506028 chr3L 1513595 1513625 17.6 11 7596 8.5 5.0 6.8 1.4 7627 chr3L 1505998 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513625 intron,intron Psa +,cue - chr3L_11_1505001 chr3L_1505001 RAL-897 922 chr3L 1569525 1569532 chr3L 1569601 1569608 7 76 6.0 16.5 11.2 0.6 83 chr3L 1569525 5` UTR CG12004 + chr3L 1569566 intron CG12004 + chr3L 1569608 intron CG12004 + chr3L_7_1565001 chr3L_1565001 RAL-897 923 chr3L 1740856 1740884 chr3L 1741096 1741125 pogo 7 237 0.0 2.0 1.0 3.5 269 chr3L 1740856 intron Gk + chr3L 1740990 intron Gk + chr3L 1741125 intron Gk + chr3L_7_1740001 chr3L_1740001 RAL-897 924 chr3L 1805699 1805712 chr3L 1805873 1805886 4 174 2.5 1.5 2.0 1.3 187 chr3L 1805699 exon CG42676 + chr3L 1805792 intron CG42676 + chr3L 1805886 intron CG42676 + chr3L_4_1805001 chr3L_1805001 RAL-897 925 chr3L 2168771 2168779 chr3L 2168862 2168870 8 91 18.0 4.5 11.2 0.7 99 chr3L 2168771 exon CG15879 - chr3L 2168820 intron CG15879 - chr3L 2168870 intron CG15879 - chr3L_8_2165001 chr3L_2165001 RAL-897 926 chr3L 2168780 2168808 chr3L 2168861 2168895 19 87 4.0 4.0 4.0 3.8 115 chr3L 2168780 exon CG15879 - chr3L 2168838 intron CG15879 - chr3L 2168895 intron CG15879 - chr3L_19_2165001 chr3L_2165001 RAL-897 927 chr3L 2203254 2203289 chr3L 2203349 2203383 15 92 2.0 4.5 3.2 3.6 129 chr3L 2203254 intergenic not near genes chr3L 2203318 intergenic not near genes chr3L 2203383 intergenic not near genes chr3L_15_2200001 chr3L_2200001 RAL-897 928 chr3L 2277979 2278010 chr3L 2278173 2278206 6 196 5.5 3.5 4.5 1.1 227 chr3L 2277979 3` UTR yellow-g2 + chr3L 2278092 intergenic yellow-g2 + chr3L 2278206 intergenic yellow-g2 + chr3L_6_2275001 chr3L_2275001 RAL-897 929 chr3L 2308002 2308035 chr3L 2308108 2308141 16 106 4.5 2.0 3.2 3.8 139 chr3L 2308002 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308141 intergenic not near genes chr3L_16_2305001 chr3L_2305001 RAL-897 930 chr3L 2331581 2331616 chr3L 2331658 2331693 10 76 2.0 3.5 2.8 2.6 112 chr3L 2331581 intron MsR1 + chr3L 2331637 intron MsR1 + chr3L 2331693 intron MsR1 + chr3L_10_2330001 chr3L_2330001 RAL-897 931 chr3L 2340530 2340560 chr3L 2340628 2340663 12 100 4.0 3.0 3.5 2.7 133 chr3L 2340530 intron MsR1 + chr3L 2340596 intron MsR1 + chr3L 2340663 intron MsR1 + chr3L_12_2340001 chr3L_2340001 RAL-897 932 chr3L 2447510 2447529 chr3L 2456666 2456685 roo 7 9155 5.5 8.0 6.8 0.9 9175 chr3L 2447510 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456685 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-897 933 chr3L 2518472 2518502 chr3L 2518549 2518581 12 77 4.5 4.0 4.2 2.3 109 chr3L 2518472 intron Spn - chr3L 2518526 intron Spn - chr3L 2518581 intron Spn - chr3L_12_2515001 chr3L_2515001 RAL-897 934 chr3L 2522210 2522243 chr3L 2522294 2522302 15 79 4.0 4.0 4.0 3.0 92 chr3L 2522210 intron Spn - chr3L 2522256 intron Spn - chr3L 2522302 intron Spn - chr3L_15_2520001 chr3L_2520001 RAL-897 935 chr3L 2533664 2533677 chr3L 2533730 2533759 5 73 8.5 5.0 6.8 0.6 95 chr3L 2533664 intron Spn - chr3L 2533712 intron Spn - chr3L 2533759 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-897 936 chr3L 2626090 2626100 chr3L 2626190 2626201 6 99 10.0 5.5 7.8 0.7 111 chr3L 2626090 intron Pxn - chr3L 2626146 intron Pxn - chr3L 2626201 intron Pxn - chr3L_6_2625001 chr3L_2625001 RAL-897 937 chr3L 2683943 2683979 chr3L 2684019 2684055 16 76 4.0 3.5 3.8 3.3 112 chr3L 2683943 intron Fife - chr3L 2683999 intron Fife - chr3L 2684055 intron Fife - chr3L_16_2680001 chr3L_2680001 RAL-897 938 chr3L 2719539 2719560 chr3L 2719640 2719662 4 102 3.0 3.5 3.2 1.0 123 chr3L 2719539 3` UTR Mrtf - chr3L 2719600 3` UTR Mrtf - chr3L 2719662 3` UTR Mrtf - chr3L_4_2715001 chr3L_2715001 RAL-897 939 chr3L 2766795 2766818 chr3L 2766907 2766930 12 112 0.0 2.5 1.2 5.5 135 chr3L 2766795 intergenic Non2 +,Mrtf - chr3L 2766862 intergenic Non2 +,Mrtf - chr3L 2766930 intergenic Non2 +,Mrtf - chr3L_12_2765001 chr3L_2765001 RAL-897 940 chr3L 2795725 2795733 chr3L 2795848 2795856 5 123 5.5 3.0 4.2 1.0 131 chr3L 2795725 intron CG43444 - chr3L 2795790 intron CG43444 - chr3L 2795856 intron CG43444 - chr3L_5_2795001 chr3L_2795001 RAL-897 941 chr3L 2795740 2795749 chr3L 2795845 2795871 7 118 4.0 2.5 3.2 1.7 131 chr3L 2795740 intron CG43444 - chr3L 2795806 intron CG43444 - chr3L 2795871 intron CG43444 - chr3L_7_2795001 chr3L_2795001 RAL-897 942 chr3L 2899575 2899606 chr3L 2899688 2899719 10 113 6.5 6.5 6.5 1.3 144 chr3L 2899575 intron Shab + chr3L 2899647 intron Shab + chr3L 2899719 intron Shab + chr3L_10_2895001 chr3L_2895001 RAL-897 943 chr3L 2927852 2927870 chr3L 2936129 2936147 Tirant 9 8277 3.0 2.0 2.5 2.6 8295 chr3L 2927852 intron Shab + chr3L 2932000 intron Shab + chr3L 2936147 intron Shab + chr3L_9_2930001 chr3L_2930001 RAL-897 944 chr3L 2974310 2974345 chr3L 2974391 2974426 12 78 0.0 5.0 2.5 3.4 116 chr3L 2974310 intergenic not near genes chr3L 2974368 intergenic not near genes chr3L 2974426 intergenic not near genes chr3L_12_2970001 chr3L_2970001 RAL-897 945 chr3L 3040324 3040337 chr3L 3042113 3042126 S-element 5 1789 5.0 0.0 2.5 1.4 1802 chr3L 3040324 3` UTR CG2162 + chr3L 3041225 intergenic not near genes chr3L 3042126 intergenic Jafrac2 + chr3L_5_3040001 chr3L_3040001 RAL-897 946 chr3L 3061284 3061317 chr3L 3069866 3069900 Tirant 11 8580 5.5 6.5 6.0 1.6 8616 chr3L 3061284 intron CG32486 - chr3L 3065592 intron CG32486 - chr3L 3069900 intron CG32486 - chr3L_11_3065001 chr3L_3065001 RAL-897 947 chr3L 3102821 3102843 chr3L 3102907 3102921 6 83 7.5 4.0 5.8 0.9 100 chr3L 3102821 intron Cht7 - chr3L 3102871 intron Cht7 - chr3L 3102921 intron Cht7 - chr3L_6_3100001 chr3L_3100001 RAL-897 948 chr3L 3102845 3102847 chr3L 3102905 3102933 5 75 6.5 3.5 5.0 0.8 88 chr3L 3102845 intron Cht7 - chr3L 3102889 intron Cht7 - chr3L 3102933 intron Cht7 - chr3L_5_3100001 chr3L_3100001 RAL-897 949 chr3L 3281450 3281471 chr3L 3281933 3281967 Doc 14 491 3.5 11.0 7.2 1.7 517 chr3L 3281450 intron CG12017 + chr3L 3281708 intron CG12017 + chr3L 3281967 intron CG12017 + chr3L_14_3280001 chr3L_3280001 RAL-897 950 chr3L 3310299 3310323 chr3L 3310373 3310401 9 78 2.0 4.0 3.0 2.2 102 chr3L 3310299 intron ZnT63C + chr3L 3310350 intron ZnT63C + chr3L 3310401 intron ZnT63C + chr3L_9_3310001 chr3L_3310001 RAL-897 951 chr3L 3314169 3314203 chr3L 3314278 3314284 20 102 8.0 11.5 9.8 1.9 115 chr3L 3314169 intergenic ZnT63C +,Drsl2 + chr3L 3314226 intergenic Drsl2 +,ZnT63C + chr3L 3314284 intergenic Drsl2 +,ZnT63C + chr3L_20_3310001 chr3L_3310001 RAL-897 952 chr3L 3475083 3475109 chr3L 3475527 3475553 jockey 11 444 2.5 7.0 4.8 1.9 470 chr3L 3475083 intron CG42324 + chr3L 3475318 intron CG42324 + chr3L 3475553 intron CG42324 + chr3L_11_3475001 chr3L_3475001 RAL-897 953 chr3L 3512960 3512976 chr3L 3513040 3513056 4 80 7.5 3.5 5.5 0.6 96 chr3L 3512960 intergenic ImpE2 - chr3L 3513008 intergenic ImpE2 - chr3L 3513056 intergenic ImpE2 - chr3L_4_3510001 chr3L_3510001 RAL-897 954 chr3L 3530702 3530727 chr3L 3530780 3530796 5 73 2.0 0.0 1.0 2.5 94 chr3L 3530702 intron Eip63E + chr3L 3530749 intron Eip63E + chr3L 3530796 intron Eip63E + chr3L_5_3530001 chr3L_3530001 RAL-897 955 chr3L 3601296 3601332 chr3L 3606607 3606643 copia 26 5310 6.5 3.0 4.8 4.5 5347 chr3L 3601296 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606643 intron Eip63E + chr3L_26_3600001 chr3L_3600001 RAL-897 956 chr3L 3619399 3619432 chr3L 3619493 3619525 7 94 1.5 1.0 1.2 3.2 126 chr3L 3619399 intergenic not near genes chr3L 3619462 intergenic not near genes chr3L 3619525 intergenic not near genes chr3L_7_3615001 chr3L_3615001 RAL-897 957 chr3L 3753261 3753295 chr3L 3753354 3753377 11 92 4.0 4.0 4.0 2.2 116 chr3L 3753261 intron CG32264 - chr3L 3753319 intron CG32264 - chr3L 3753377 intron CG32264 - chr3L_11_3750001 chr3L_3750001 RAL-897 958 chr3L 3782514 3782530 chr3L 3782586 3782607 8 77 0.5 3.5 2.0 2.7 93 chr3L 3782514 intron CG32264 - chr3L 3782560 intron CG32264 - chr3L 3782607 intron CG32264 - chr3L_8_3780001 chr3L_3780001 RAL-897 959 chr3L 3793036 3793058 chr3L 3793176 3793198 6 140 0.0 3.5 1.8 2.1 162 chr3L 3793036 intron CG32264 - chr3L 3793117 intron CG32264 - chr3L 3793198 intron CG32264 - chr3L_6_3790001 chr3L_3790001 RAL-897 960 chr3L 3798040 3798066 chr3L 3798119 3798146 4 80 4.0 3.5 3.8 0.8 106 chr3L 3798040 intron CG32264 - chr3L 3798093 intron CG32264 - chr3L 3798146 intron CG32264 - chr3L_4_3795001 chr3L_3795001 RAL-897 961 chr3L 3815054 3815082 chr3L 3815135 3815163 12 81 4.5 2.5 3.5 2.7 109 chr3L 3815054 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815108 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815163 intron,intron Scsalpha +,CR43932 - chr3L_12_3815001 chr3L_3815001 RAL-897 962 chr3L 3877458 3877467 chr3L 3877581 3877590 5 122 0.0 3.5 1.8 1.8 132 chr3L 3877458 intergenic not near genes chr3L 3877524 intergenic not near genes chr3L 3877590 intergenic not near genes chr3L_5_3875001 chr3L_3875001 RAL-897 963 chr3L 3946190 3946220 chr3L 3946267 3946290 10 75 5.0 3.5 4.2 1.9 100 chr3L 3946190 3` UTR CG14982 + chr3L 3946240 3` UTR CG14982 + chr3L 3946290 3` UTR CG14982 + chr3L_10_3945001 chr3L_3945001 RAL-897 964 chr3L 3964195 3964203 chr3L 3964271 3964279 4 75 6.5 7.0 6.8 0.5 84 chr3L 3964195 intron CG12605 - chr3L 3964237 intron CG12605 - chr3L 3964279 intron CG12605 - chr3L_4_3960001 chr3L_3960001 RAL-897 965 chr3L 4015733 4015761 chr3L 4015816 4015844 16 83 5.0 1.5 3.2 3.8 111 chr3L 4015733 intergenic not near genes chr3L 4015788 intergenic not near genes chr3L 4015844 intergenic not near genes chr3L_16_4015001 chr3L_4015001 RAL-897 966 chr3L 4146816 4146838 chr3L 4146898 4146920 6 82 0.5 1.5 1.0 3.0 104 chr3L 4146816 intergenic not near genes chr3L 4146868 intergenic not near genes chr3L 4146920 intergenic not near genes chr3L_6_4145001 chr3L_4145001 RAL-897 967 chr3L 4170090 4170113 chr3L 4170259 4170282 7 169 3.5 7.0 5.2 1.1 192 chr3L 4170090 intergenic Ero1L + chr3L 4170186 intergenic Ero1L + chr3L 4170282 intergenic Ero1L + chr3L_7_4170001 chr3L_4170001 RAL-897 968 chr3L 4210911 4210941 chr3L 4210991 4211019 8 76 1.5 2.5 2.0 2.7 108 chr3L 4210911 intron,3` UTR CG43367 +,Cpr64Ab - chr3L 4210965 intron,3` UTR CG43367 +,Cpr64Ab - chr3L 4211019 intron,exon CG43367 +,Cpr64Ab - chr3L_8_4210001 chr3L_4210001 RAL-897 969 chr3L 4231169 4231186 chr3L 4231243 4231272 4 84 4.0 3.5 3.8 0.8 103 chr3L 4231169 intron ImpL2 - chr3L 4231220 intron ImpL2 - chr3L 4231272 intron ImpL2 - chr3L_4_4230001 chr3L_4230001 RAL-897 970 chr3L 4328740 4328761 chr3L 4336238 4336259 412 5 7497 5.5 6.5 6.0 0.7 7519 chr3L 4328740 intron Cip4 - chr3L 4332500 intron Cip4 - chr3L 4336259 intron Cip4 - chr3L_5_4330001 chr3L_4330001 RAL-897 971 chr3L 4384891 4384929 chr3L 4384984 4385022 13 92 3.5 3.0 3.2 3.1 131 chr3L 4384891 intron slow + chr3L 4384956 intron slow + chr3L 4385022 intron slow + chr3L_13_4380001 chr3L_4380001 RAL-897 972 chr3L 4484721 4484750 chr3L 4484798 4484828 8 77 2.0 0.5 1.2 3.6 107 chr3L 4484721 intergenic CG11350 +,CG13722 - chr3L 4484774 intergenic CG13722 -,CG11350 + chr3L 4484828 intergenic CG13722 -,CG11350 + chr3L_8_4480001 chr3L_4480001 RAL-897 973 chr3L 4519417 4519454 chr3L 4519494 4519531 15 75 4.0 1.0 2.5 4.3 114 chr3L 4519417 intron Tie - chr3L 4519474 intron Tie - chr3L 4519531 intron Tie - chr3L_15_4515001 chr3L_4515001 RAL-897 974 chr3L 4607279 4607290 chr3L 4607370 4607381 6 91 1.5 5.5 3.5 1.3 102 chr3L 4607279 intron Src64B - chr3L 4607330 intron Src64B - chr3L 4607381 intron Src64B - chr3L_6_4605001 chr3L_4605001 RAL-897 975 chr3L 4657970 4658001 chr3L 4658429 4658462 12 459 1.0 7.0 4.0 2.4 492 chr3L 4657970 intron axo - chr3L 4658216 intron axo - chr3L 4658462 intron axo - chr3L_12_4655001 chr3L_4655001 RAL-897 976 chr3L 4709884 4709897 chr3L 4710147 4710152 5 267 6.5 3.5 5.0 0.8 268 chr3L 4709884 intron,5` UTR RhoGEF64C +,CG13712 - chr3L 4710018 intron RhoGEF64C + chr3L 4710152 intron RhoGEF64C + chr3L_5_4710001 chr3L_4710001 RAL-897 977 chr3L 4748706 4748725 chr3L 4748797 4748816 8 91 8.5 3.0 5.8 1.2 110 chr3L 4748706 intron RhoGEF64C + chr3L 4748761 intron RhoGEF64C + chr3L 4748816 intron RhoGEF64C + chr3L_8_4745001 chr3L_4745001 RAL-897 978 chr3L 4755884 4755908 chr3L 4755971 4755996 9 88 4.0 0.5 2.2 2.8 112 chr3L 4755884 intron,5` UTR RhoGEF64C +,CR43881 + chr3L 4755940 intron,5` UTR RhoGEF64C +,CR43881 + chr3L 4755996 intron,5` UTR RhoGEF64C +,CR43881 + chr3L_9_4755001 chr3L_4755001 RAL-897 979 chr3L 4782247 4782271 chr3L 4782350 4782374 11 101 4.0 4.5 4.2 2.1 127 chr3L 4782247 intron RhoGEF64C + chr3L 4782310 intron RhoGEF64C + chr3L 4782374 intron RhoGEF64C + chr3L_11_4780001 chr3L_4780001 RAL-897 980 chr3L 4797970 4797989 chr3L 4798045 4798069 8 76 4.0 4.0 4.0 1.6 99 chr3L 4797970 intergenic not near genes chr3L 4798020 intergenic not near genes chr3L 4798069 intergenic not near genes chr3L_8_4795001 chr3L_4795001 RAL-897 981 chr3L 4799248 4799253 chr3L 4799655 4799659 4 406 13.0 4.0 8.5 0.4 411 chr3L 4799248 intergenic not near genes chr3L 4799454 intergenic not near genes chr3L 4799659 intergenic CR45740 + chr3L_4_4795001 chr3L_4795001 RAL-897 982 chr3L 4799254 4799268 chr3L 4799652 4799673 8 405 8.5 3.5 6.0 1.1 419 chr3L 4799254 intergenic not near genes chr3L 4799464 intergenic not near genes chr3L 4799673 intergenic CR45740 + chr3L_8_4795001 chr3L_4795001 RAL-897 983 chr3L 4837890 4837918 chr3L 4837969 4837992 7 78 3.5 4.5 4.0 1.4 102 chr3L 4837890 3` UTR CG13707 - chr3L 4837941 3` UTR CG13707 - chr3L 4837992 3` UTR CG13707 - chr3L_7_4835001 chr3L_4835001 RAL-897 984 chr3L 4840406 4840421 chr3L 4840515 4840529 12 107 3.0 2.0 2.5 3.4 123 chr3L 4840406 intergenic CG13707 - chr3L 4840468 intergenic CG13707 - chr3L 4840529 intergenic CG13707 - chr3L_12_4840001 chr3L_4840001 RAL-897 985 chr3L 4858301 4858337 chr3L 4858391 4858424 15 79 6.0 5.0 5.5 2.3 123 chr3L 4858301 intergenic not near genes chr3L 4858362 intergenic not near genes chr3L 4858424 intergenic not near genes chr3L_15_4855001 chr3L_4855001 RAL-897 986 chr3L 4901126 4901153 chr3L 4907316 4907343 diver 13 6189 3.5 2.5 3.0 3.2 6217 chr3L 4901126 intergenic CG13704 + chr3L 4904234 intergenic not near genes chr3L 4907343 intergenic not near genes chr3L_13_4900001 chr3L_4900001 RAL-897 987 chr3L 5045457 5045485 chr3L 5050237 5050266 Doc 7 4779 2.5 3.0 2.8 1.8 4809 chr3L 5045457 intron Con - chr3L 5047862 intron Con - chr3L 5050266 intron Con - chr3L_7_5045001 chr3L_5045001 RAL-897 988 chr3L 5104492 5104510 chr3L 5124626 5124644 7 20134 1.5 3.0 2.2 2.2 20152 chr3L 5104492 intergenic not near genes chr3L 5114568 intergenic not near genes chr3L 5124644 intergenic not near genes chr3L_7_5110001 chr3L_5110001 RAL-897 989 chr3L 5212240 5212264 chr3L 5212323 5212346 14 78 7.0 6.5 6.8 1.8 106 chr3L 5212240 intron shep - chr3L 5212293 intron shep - chr3L 5212346 intron shep - chr3L_14_5210001 chr3L_5210001 RAL-897 990 chr3L 5212265 5212270 chr3L 5212322 5212326 5 72 4.5 6.0 5.2 0.8 61 chr3L 5212265 intron shep - chr3L 5212296 intron shep - chr3L 5212326 intron shep - chr3L_5_5210001 chr3L_5210001 RAL-897 991 chr3L 5215287 5215311 chr3L 5215449 5215473 4 162 1.5 1.5 1.5 1.6 186 chr3L 5215287 intron shep - chr3L 5215380 intron shep - chr3L 5215473 intron shep - chr3L_4_5215001 chr3L_5215001 RAL-897 992 chr3L 5247051 5247078 chr3L 5247135 5247146 12 81 3.0 6.0 4.5 2.2 95 chr3L 5247051 intron shep - chr3L 5247098 intron shep - chr3L 5247146 intron shep - chr3L_12_5245001 chr3L_5245001 RAL-897 993 chr3L 5251861 5251871 chr3L 5251940 5251950 5 79 0.0 5.0 2.5 1.4 89 chr3L 5251861 intron shep - chr3L 5251906 intron shep - chr3L 5251950 intron shep - chr3L_5_5250001 chr3L_5250001 RAL-897 994 chr3L 5290237 5290273 chr3L 5290324 5290358 8 86 1.0 2.0 1.5 3.2 121 chr3L 5290237 intergenic not near genes chr3L 5290298 intergenic not near genes chr3L 5290358 intergenic not near genes chr3L_8_5290001 chr3L_5290001 RAL-897 995 chr3L 5321081 5321095 chr3L 5321157 5321170 9 74 6.0 6.5 6.2 1.2 89 chr3L 5321081 intergenic not near genes chr3L 5321126 intergenic not near genes chr3L 5321170 intergenic not near genes chr3L_9_5320001 chr3L_5320001 RAL-897 996 chr3L 5321096 5321109 chr3L 5321153 5321185 8 72 3.5 5.5 4.5 1.5 89 chr3L 5321096 intergenic not near genes chr3L 5321140 intergenic not near genes chr3L 5321185 intergenic not near genes chr3L_8_5320001 chr3L_5320001 RAL-897 997 chr3L 5327469 5327475 chr3L 5327554 5327557 4 83 4.5 5.5 5.0 0.7 88 chr3L 5327469 intergenic not near genes chr3L 5327513 intergenic not near genes chr3L 5327557 intergenic not near genes chr3L_4_5325001 chr3L_5325001 RAL-897 998 chr3L 5388199 5388233 chr3L 5388523 5388557 13 322 5.5 6.0 5.8 1.9 358 chr3L 5388199 intergenic not near genes chr3L 5388378 intergenic not near genes chr3L 5388557 intergenic not near genes chr3L_13_5385001 chr3L_5385001 RAL-897 999 chr3L 5449543 5449555 chr3L 5449622 5449634 5 79 2.0 6.0 4.0 1.0 91 chr3L 5449543 intergenic not near genes chr3L 5449588 intergenic not near genes chr3L 5449634 intergenic not near genes chr3L_5_5445001 chr3L_5445001 RAL-897 1000 chr3L 5483036 5483076 chr3L 5483177 5483184 8 134 14.0 29.5 21.8 0.4 148 chr3L 5483036 exon CG4835 + chr3L 5483110 exon CG4835 + chr3L 5483184 exon CG4835 + chr3L_8_5480001 chr3L_5480001 RAL-897 1001 chr3L 5485050 5485077 chr3L 5485132 5485142 5 79 2.5 4.0 3.2 1.2 92 chr3L 5485050 intergenic not near genes chr3L 5485096 intergenic not near genes chr3L 5485142 intergenic not near genes chr3L_5_5485001 chr3L_5485001 RAL-897 1002 chr3L 5514745 5514768 chr3L 5514822 5514845 6 77 2.0 2.0 2.0 2.0 100 chr3L 5514745 intron Lkr - chr3L 5514795 intron Lkr - chr3L 5514845 intron Lkr - chr3L_6_5510001 chr3L_5510001 RAL-897 1003 chr3L 5537728 5537744 chr3L 5538069 5538083 jockey 6 341 4.0 2.0 3.0 1.5 355 chr3L 5537728 intergenic not near genes chr3L 5537906 intergenic not near genes chr3L 5538083 intergenic CG10625 - chr3L_6_5535001 chr3L_5535001 RAL-897 1004 chr3L 5615056 5615079 chr3L 5615150 5615173 9 93 7.5 5.0 6.2 1.2 117 chr3L 5615056 intergenic not near genes chr3L 5615114 intergenic not near genes chr3L 5615173 intergenic not near genes chr3L_9_5615001 chr3L_5615001 RAL-897 1005 chr3L 5727178 5727189 chr3L 5727651 5727662 4 472 6.5 6.0 6.2 0.6 484 chr3L 5727178 intron sif + chr3L 5727420 intron sif + chr3L 5727662 intron sif + chr3L_4_5725001 chr3L_5725001 RAL-897 1006 chr3L 5765179 5765211 chr3L 5765256 5765290 18 76 4.5 4.0 4.2 3.5 111 chr3L 5765179 exon CG10576 - chr3L 5765234 intron CG10576 - chr3L 5765290 intron CG10576 - chr3L_18_5765001 chr3L_5765001 RAL-897 1007 chr3L 5788705 5788739 chr3L 5788786 5788819 7 75 5.0 5.0 5.0 1.2 114 chr3L 5788705 intergenic not near genes chr3L 5788762 intergenic not near genes chr3L 5788819 intergenic not near genes chr3L_7_5785001 chr3L_5785001 RAL-897 1008 chr3L 5926319 5926334 chr3L 5926509 5926524 BS 4 190 7.0 7.0 7.0 0.5 205 chr3L 5926319 intron Vap-33B + chr3L 5926422 intron Vap-33B + chr3L 5926524 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-897 1009 chr3L 5926336 5926347 chr3L 5926507 5926507 BS 6 174 4.0 6.5 5.2 1.0 171 chr3L 5926336 intron Vap-33B + chr3L 5926422 intron Vap-33B + chr3L 5926507 intron Vap-33B + chr3L_6_5925001 chr3L_5925001 RAL-897 1010 chr3L 5963770 5963802 chr3L 5963859 5963863 5 83 0.0 0.5 0.2 4.2 93 chr3L 5963770 intergenic not near genes chr3L 5963816 intergenic not near genes chr3L 5963863 intergenic not near genes chr3L_5_5960001 chr3L_5960001 RAL-897 1011 chr3L 5983836 5983866 chr3L 5983954 5983987 9 120 3.5 0.0 1.8 3.2 151 chr3L 5983836 3` UTR CR45439 - chr3L 5983912 intergenic CR45439 -,CR45440 - chr3L 5983987 intergenic CR45439 -,CR45440 - chr3L_9_5980001 chr3L_5980001 RAL-897 1012 chr3L 6001684 6001702 chr3L 6004384 6004398 jockey 5 2699 6.0 1.0 3.5 1.1 2714 chr3L 6001684 intron PVRAP + chr3L 6003041 intron PVRAP + chr3L 6004398 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-897 1013 chr3L 6040369 6040393 chr3L 6042725 6042742 Doc 5 2354 2.5 3.5 3.0 1.2 2373 chr3L 6040369 intergenic Jon65Aiv + chr3L 6041556 intergenic not near genes chr3L 6042742 intergenic not near genes chr3L_5_6040001 chr3L_6040001 RAL-897 1014 chr3L 6052140 6052149 chr3L 6052226 6052235 4 86 0.5 3.0 1.8 1.4 95 chr3L 6052140 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052188 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052235 intergenic Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-897 1015 chr3L 6052661 6052669 chr3L 6052736 6052753 4 82 6.0 12.5 9.2 0.4 92 chr3L 6052661 exon Jon65Aii + chr3L 6052707 intron Jon65Aii + chr3L 6052753 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-897 1016 chr3L 6116699 6116717 chr3L 6116780 6116801 5 83 3.5 2.0 2.8 1.3 102 chr3L 6116699 intron Ets65A + chr3L 6116750 intron Ets65A + chr3L 6116801 intron Ets65A + chr3L_5_6115001 chr3L_6115001 RAL-897 1017 chr3L 6159884 6159896 chr3L 6159972 6159986 6 90 2.5 4.0 3.2 1.4 102 chr3L 6159884 intergenic not near genes chr3L 6159935 intergenic not near genes chr3L 6159986 intergenic not near genes chr3L_6_6155001 chr3L_6155001 RAL-897 1018 chr3L 6220920 6220946 chr3L 6230072 6230098 roo 9 9151 8.0 7.5 7.8 1.0 9178 chr3L 6220920 5` UTR pncr008:3L + chr3L 6225509 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_9_6225001 chr3L_6225001 RAL-897 1019 chr3L 6335009 6335042 chr3L 6335480 6335512 297 7 470 3.5 3.5 3.5 1.6 503 chr3L 6335009 intron CG13300 - chr3L 6335260 intron CG13300 - chr3L 6335512 intron CG13300 - chr3L_7_6335001 chr3L_6335001 RAL-897 1020 chr3L 6353378 6353409 chr3L 6353456 6353489 7 77 1.0 4.5 2.8 1.8 111 chr3L 6353378 intergenic not near genes chr3L 6353434 intergenic not near genes chr3L 6353489 intergenic not near genes chr3L_7_6350001 chr3L_6350001 RAL-897 1021 chr3L 6405664 6405680 chr3L 6432128 6432144 roo 4 26464 4.5 3.0 3.8 0.8 26480 chr3L 6405664 intron CG42747 + chr3L 6418904 intron CG42747 + chr3L 6432144 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-897 1022 chr3L 6562854 6562866 chr3L 6562923 6562946 4 77 1.0 2.5 1.8 1.4 92 chr3L 6562854 intron CG18769 + chr3L 6562900 intron CG18769 + chr3L 6562946 intron CG18769 + chr3L_4_6560001 chr3L_6560001 RAL-897 1023 chr3L 6575547 6575568 chr3L 6575705 6575727 6 159 5.0 2.0 3.5 1.3 180 chr3L 6575547 intron,intron CG18769 +,jv - chr3L 6575637 intron,intron CG18769 +,jv - chr3L 6575727 intron,intron CG18769 +,jv - chr3L_6_6575001 chr3L_6575001 RAL-897 1024 chr3L 6623491 6623506 chr3L 6623573 6623602 5 92 4.0 6.0 5.0 0.8 111 chr3L 6623491 intergenic not near genes chr3L 6623546 intergenic GluRIA + chr3L 6623602 intergenic GluRIA + chr3L_5_6620001 chr3L_6620001 RAL-897 1025 chr3L 6624867 6624892 chr3L 6625401 6625425 6 531 9.5 0.0 4.8 1.0 558 chr3L 6624867 intron GluRIA + chr3L 6625146 intron GluRIA + chr3L 6625425 intron GluRIA + chr3L_6_6625001 chr3L_6625001 RAL-897 1026 chr3L 6668964 6668992 chr3L 6669045 6669058 9 78 4.5 1.0 2.8 2.4 94 chr3L 6668964 intergenic not near genes chr3L 6669011 intergenic not near genes chr3L 6669058 intergenic not near genes chr3L_9_6665001 chr3L_6665001 RAL-897 1027 chr3L 6781132 6781139 chr3L 6783145 6783152 Doc 5 2013 1.5 0.0 0.8 2.8 2020 chr3L 6781132 intergenic not near genes chr3L 6782142 intergenic not near genes chr3L 6783152 intergenic not near genes chr3L_5_6780001 chr3L_6780001 RAL-897 1028 chr3L 6855937 6855946 chr3L 6860715 6860730 Doc 4 4782 7.5 4.5 6.0 0.6 4793 chr3L 6855937 intergenic not near genes chr3L 6858334 intergenic not near genes chr3L 6860730 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-897 1029 chr3L 6880498 6880523 chr3L 6880649 6880671 8 150 6.0 7.5 6.8 1.0 173 chr3L 6880498 intergenic not near genes chr3L 6880584 intergenic not near genes chr3L 6880671 intergenic not near genes chr3L_8_6880001 chr3L_6880001 RAL-897 1030 chr3L 6887515 6887551 chr3L 6895007 6895043 roo 21 7492 2.5 5.0 3.8 4.4 7528 chr3L 6887515 intergenic not near genes chr3L 6891279 intergenic not near genes chr3L 6895043 intergenic not near genes chr3L_21_6890001 chr3L_6890001 RAL-897 1031 chr3L 6934342 6934364 chr3L 6934453 6934475 8 111 4.0 2.5 3.2 1.9 133 chr3L 6934342 exon CG14820 + chr3L 6934408 intron CG14820 + chr3L 6934475 intron CG14820 + chr3L_8_6930001 chr3L_6930001 RAL-897 1032 chr3L 6941970 6942001 chr3L 6942054 6942085 9 84 2.5 9.0 5.8 1.3 115 chr3L 6941970 intergenic not near genes chr3L 6942028 intergenic not near genes chr3L 6942085 intergenic not near genes chr3L_9_6940001 chr3L_6940001 RAL-897 1033 chr3L 6974506 6974525 chr3L 6974607 6974626 7 100 0.0 9.5 4.8 1.2 120 chr3L 6974506 intron Galphai - chr3L 6974566 intron Galphai - chr3L 6974626 intron Galphai - chr3L_7_6970001 chr3L_6970001 RAL-897 1034 chr3L 7033176 7033193 chr3L 7033256 7033273 7 79 6.0 6.0 6.0 1.0 97 chr3L 7033176 intron Mp + chr3L 7033224 intron Mp + chr3L 7033273 intron Mp + chr3L_7_7030001 chr3L_7030001 RAL-897 1035 chr3L 7033195 7033203 chr3L 7033251 7033283 4 74 3.0 4.0 3.5 0.9 88 chr3L 7033195 intron Mp + chr3L 7033239 intron Mp + chr3L 7033283 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-897 1036 chr3L 7104047 7104074 chr3L 7104151 7104178 11 104 4.5 3.0 3.8 2.3 131 chr3L 7104047 intron form3 + chr3L 7104112 intron form3 + chr3L 7104178 intron form3 + chr3L_11_7100001 chr3L_7100001 RAL-897 1037 chr3L 7112599 7112614 chr3L 7112686 7112701 5 87 1.5 5.5 3.5 1.1 102 chr3L 7112599 intron form3 + chr3L 7112650 intron form3 + chr3L 7112701 intron form3 + chr3L_5_7110001 chr3L_7110001 RAL-897 1038 chr3L 7129961 7129981 chr3L 7130153 7130173 BS 4 192 0.0 3.0 1.5 1.6 212 chr3L 7129961 intergenic CG15829 + chr3L 7130067 intergenic CG15829 + chr3L 7130173 intergenic CG15829 + chr3L_4_7130001 chr3L_7130001 RAL-897 1039 chr3L 7244929 7244965 chr3L 7245021 7245054 12 87 3.0 3.0 3.0 3.0 125 chr3L 7244929 exon mei-P22 + chr3L 7244992 exon mei-P22 + chr3L 7245054 exon mei-P22 + chr3L_12_7240001 chr3L_7240001 RAL-897 1040 chr3L 7257522 7257551 chr3L 7257639 7257668 13 116 3.0 4.5 3.8 2.7 146 chr3L 7257522 intron CG14830 - chr3L 7257595 intron CG14830 - chr3L 7257668 intron CG14830 - chr3L_13_7255001 chr3L_7255001 RAL-897 1041 chr3L 7311590 7311621 chr3L 7311681 7311693 14 85 3.0 1.0 2.0 4.7 103 chr3L 7311590 intron unc-13-4A - chr3L 7311642 intron unc-13-4A - chr3L 7311693 intron unc-13-4A - chr3L_14_7310001 chr3L_7310001 RAL-897 1042 chr3L 7355719 7355729 chr3L 7363629 7363656 12 7911 48.5 53.0 50.8 0.2 7937 chr3L 7355719 exon CTCF - chr3L 7359688 exon pst - chr3L 7363656 exon Sec63 + chr3L_12_7355001 chr3L_7355001 RAL-897 1043 chr3L 7377320 7377331 chr3L 7380423 7380435 297 5 3104 6.0 4.0 5.0 0.8 3115 chr3L 7377320 intron SMSr - chr3L 7378878 intron SMSr - chr3L 7380435 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-897 1044 chr3L 7444021 7444046 chr3L 7444119 7444145 5 99 5.0 0.0 2.5 1.4 124 chr3L 7444021 intron CG42458 + chr3L 7444083 intron CG42458 + chr3L 7444145 intron CG42458 + chr3L_5_7440001 chr3L_7440001 RAL-897 1045 chr3L 7450686 7450713 chr3L 7450769 7450796 9 83 2.0 2.5 2.2 2.8 110 chr3L 7450686 intron CG42458 + chr3L 7450741 intron CG42458 + chr3L 7450796 intron CG42458 + chr3L_9_7450001 chr3L_7450001 RAL-897 1046 chr3L 7505420 7505437 chr3L 7505496 7505510 4 72 2.5 2.5 2.5 1.1 90 chr3L 7505420 intergenic CG7548 - chr3L 7505465 intergenic CG7548 - chr3L 7505510 intergenic CG7548 - chr3L_4_7505001 chr3L_7505001 RAL-897 1047 chr3L 7576216 7576245 chr3L 7576304 7576333 15 87 5.0 5.0 5.0 2.5 117 chr3L 7576216 intergenic not near genes chr3L 7576274 intergenic not near genes chr3L 7576333 intergenic not near genes chr3L_15_7575001 chr3L_7575001 RAL-897 1048 chr3L 7581623 7581655 chr3L 7581705 7581738 11 78 3.5 3.0 3.2 2.6 115 chr3L 7581623 intergenic not near genes chr3L 7581680 intergenic not near genes chr3L 7581738 intergenic not near genes chr3L_11_7580001 chr3L_7580001 RAL-897 1049 chr3L 7591177 7591182 chr3L 7591243 7591273 4 83 4.5 10.5 7.5 0.5 96 chr3L 7591177 intergenic CG7716 - chr3L 7591225 intergenic CG7716 - chr3L 7591273 intergenic CG7716 - chr3L_4_7590001 chr3L_7590001 RAL-897 1050 chr3L 7711834 7711854 chr3L 7711904 7711929 7 71 0.5 3.5 2.0 2.3 95 chr3L 7711834 intron,intron CG32373 +,Ank2 - chr3L 7711882 intron,intron CG32373 +,Ank2 - chr3L 7711929 intron,intron CG32373 +,Ank2 - chr3L_7_7710001 chr3L_7710001 RAL-897 1051 chr3L 7793710 7793741 chr3L 7800762 7800792 297 11 7050 5.0 4.0 4.5 2.0 7082 chr3L 7793710 intron CG32369 - chr3L 7797251 intron CG32369 - chr3L 7800792 intron CG32369 - chr3L_11_7795001 chr3L_7795001 RAL-897 1052 chr3L 7886518 7886546 chr3L 7889030 7889064 Stalker4 20 2517 1.5 5.0 3.2 4.8 2546 chr3L 7886518 intron CG32365 + chr3L 7887791 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_20_7885001 chr3L_7885001 RAL-897 1053 chr3L 7967367 7967371 chr3L 17695512 17695512 5 9728144 10.5 12.5 11.5 0.4 9728145 chr3L 7967367 intergenic not near genes chr3L 12831440 intron CG10960 - chr3L 17695512 intron Ccn + chr3L_5_12830001 chr3L_12830001 RAL-897 1054 chr3L 7985366 7985398 chr3L 7987694 7987713 NOF 10 2326 1.5 4.5 3.0 2.5 2347 chr3L 7985366 intron nmo + chr3L 7986540 intron nmo + chr3L 7987713 intron nmo + chr3L_10_7985001 chr3L_7985001 RAL-897 1055 chr3L 8060047 8060070 chr3L 8060147 8060169 4 100 2.0 5.5 3.8 0.8 122 chr3L 8060047 intergenic not near genes chr3L 8060108 intergenic not near genes chr3L 8060169 intergenic not near genes chr3L_4_8060001 chr3L_8060001 RAL-897 1056 chr3L 8075360 8075391 chr3L 8075446 8075477 8 86 1.5 3.5 2.5 2.3 117 chr3L 8075360 intron Ect4 + chr3L 8075418 intron Ect4 + chr3L 8075477 intron Ect4 + chr3L_8_8075001 chr3L_8075001 RAL-897 1057 chr3L 8178520 8178532 chr3L 8178597 8178609 4 77 1.0 0.0 0.5 2.7 89 chr3L 8178520 intergenic Nmt -,mthl7 - chr3L 8178564 intergenic mthl7 -,Nmt - chr3L 8178609 intergenic mthl7 -,Nmt - chr3L_4_8175001 chr3L_8175001 RAL-897 1058 chr3L 8205895 8205917 chr3L 8206345 8206367 6 450 2.0 4.5 3.2 1.4 472 chr3L 8205895 intergenic not near genes chr3L 8206131 intergenic not near genes chr3L 8206367 intergenic not near genes chr3L_6_8205001 chr3L_8205001 RAL-897 1059 chr3L 8226715 8226743 chr3L 8226814 8226842 7 99 1.5 0.0 0.8 3.9 127 chr3L 8226715 intergenic not near genes chr3L 8226778 intergenic not near genes chr3L 8226842 intergenic not near genes chr3L_7_8225001 chr3L_8225001 RAL-897 1060 chr3L 8295790 8295828 chr3L 8295947 8295971 16 157 5.5 6.5 6.0 2.3 181 chr3L 8295790 intergenic CG7201 - chr3L 8295880 intergenic not near genes chr3L 8295971 intergenic not near genes chr3L_16_8295001 chr3L_8295001 RAL-897 1061 chr3L 8395832 8395868 chr3L 8395928 8395930 10 91 4.0 5.0 4.5 1.8 98 chr3L 8395832 intergenic CG7120 + chr3L 8395881 intergenic CG7120 + chr3L 8395930 intergenic CG7120 + chr3L_10_8395001 chr3L_8395001 RAL-897 1062 chr3L 8643582 8643591 chr3L 8643658 8643667 8 75 4.0 3.5 3.8 1.7 85 chr3L 8643582 3` UTR Cpr66D + chr3L 8643624 intergenic Cpr66D + chr3L 8643667 intergenic Cpr66D + chr3L_8_8640001 chr3L_8640001 RAL-897 1063 chr3L 8784398 8784413 chr3L 8784473 8784489 9 74 8.5 5.5 7.0 1.1 91 chr3L 8784398 intron Fhos + chr3L 8784444 intron Fhos + chr3L 8784489 intron Fhos + chr3L_9_8780001 chr3L_8780001 RAL-897 1064 chr3L 8791280 8791292 chr3L 8796697 8796712 I-element 6 5419 10.0 0.0 5.0 1.0 5432 chr3L 8791280 exon Fhos + chr3L 8793996 intron Fhos + chr3L 8796712 intron Fhos + chr3L_6_8790001 chr3L_8790001 RAL-897 1065 chr3L 8950545 8950581 chr3L 8950639 8950675 13 92 3.5 4.0 3.8 2.7 130 chr3L 8950545 intron,intron CG43783 -,orb2 - chr3L 8950610 intron,intron CG43783 -,orb2 - chr3L 8950675 intron,intron CG43783 -,orb2 - chr3L_13_8950001 chr3L_8950001 RAL-897 1066 chr3L 9003953 9003961 chr3L 9004038 9004046 5 85 7.0 6.5 6.8 0.6 93 chr3L 9003953 intergenic not near genes chr3L 9004000 intergenic not near genes chr3L 9004046 intergenic not near genes chr3L_5_9000001 chr3L_9000001 RAL-897 1067 chr3L 9003965 9003978 chr3L 9004037 9004063 10 81 6.5 6.5 6.5 1.3 98 chr3L 9003965 intergenic not near genes chr3L 9004014 intergenic not near genes chr3L 9004063 intergenic not near genes chr3L_10_9000001 chr3L_9000001 RAL-897 1068 chr3L 9011133 9011156 chr3L 9011220 9011243 8 87 2.5 1.5 2.0 2.7 110 chr3L 9011133 intergenic not near genes chr3L 9011188 intergenic not near genes chr3L 9011243 intergenic not near genes chr3L_8_9010001 chr3L_9010001 RAL-897 1069 chr3L 9013689 9013693 chr3L 18417066 18417066 8 9403375 30.5 24.0 27.2 0.3 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_8_13715001 chr3L_13715001 RAL-897 1070 chr3L 9024502 9024531 chr3L 9024582 9024610 4 79 3.0 1.5 2.2 1.2 108 chr3L 9024502 intergenic not near genes chr3L 9024556 intergenic not near genes chr3L 9024610 intergenic not near genes chr3L_4_9020001 chr3L_9020001 RAL-897 1071 chr3L 9076925 9076959 chr3L 9084485 9084505 412 25 7557 8.5 6.5 7.5 2.9 7580 chr3L 9076925 exon Tequila + chr3L 9080715 intron Tequila + chr3L 9084505 exon Tequila + chr3L_25_9080001 chr3L_9080001 RAL-897 1072 chr3L 9130567 9130582 chr3L 9134318 9134343 412 8 3760 8.0 3.0 5.5 1.2 3776 chr3L 9130567 intergenic bol - chr3L 9132455 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_8_9130001 chr3L_9130001 RAL-897 1073 chr3L 9164696 9164730 chr3L 9166163 9166197 hobo 9 1467 3.0 0.5 1.8 3.2 1501 chr3L 9164696 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166197 intron Rdl - chr3L_9_9165001 chr3L_9165001 RAL-897 1074 chr3L 9219248 9219274 chr3L 9219915 9219946 jockey 9 669 4.5 4.0 4.2 1.7 698 chr3L 9219248 intergenic not near genes chr3L 9219597 intergenic not near genes chr3L 9219946 intergenic not near genes chr3L_9_9215001 chr3L_9215001 RAL-897 1075 chr3L 9220207 9220240 chr3L 9220289 9220323 16 81 3.0 3.5 3.2 3.8 116 chr3L 9220207 intergenic not near genes chr3L 9220265 intergenic not near genes chr3L 9220323 intergenic not near genes chr3L_16_9220001 chr3L_9220001 RAL-897 1076 chr3L 9270615 9270646 chr3L 9278370 9278397 roo 15 7752 3.5 5.5 4.5 2.7 7782 chr3L 9270615 intron GluRIB + chr3L 9274506 intron GluRIB + chr3L 9278397 exon GluRIB + chr3L_15_9270001 chr3L_9270001 RAL-897 1077 chr3L 9290048 9290077 chr3L 9290124 9290153 10 76 0.0 0.0 0.0 10.0 105 chr3L 9290048 intergenic not near genes chr3L 9290100 intergenic not near genes chr3L 9290153 intergenic not near genes chr3L_10_9290001 chr3L_9290001 RAL-897 1078 chr3L 9348467 9348705 chr3L 9348969 9349054 12 476 0.0 0.0 0.0 12.0 587 chr3L 9348467 intergenic PGRP-LC + chr3L 9348760 intergenic PGRP-LC + chr3L 9349054 intergenic not near genes chr3L_12_9345001 chr3L_9345001 RAL-897 1079 chr3L 9369333 9369364 chr3L 9369449 9369479 12 115 7.0 9.0 8.0 1.3 146 chr3L 9369333 intron CG4452 + chr3L 9369406 intron CG4452 + chr3L 9369479 intron CG4452 + chr3L_12_9365001 chr3L_9365001 RAL-897 1080 chr3L 9367998 9368021 chr3L 9370944 9370968 10 2947 34.5 40.0 37.2 0.3 2970 chr3L 9367998 exon CG4452 + chr3L 9369483 intron CG4452 + chr3L 9370968 exon Fdxh - chr3L_10_9365001 chr3L_9365001 RAL-897 1081 chr3L 9443516 9443534 chr3L 9445307 9445325 S-element 5 1791 3.5 1.5 2.5 1.4 1809 chr3L 9443516 intron CG33926 + chr3L 9444420 intron CG33926 + chr3L 9445325 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-897 1082 chr3L 9533759 9533785 chr3L 9541314 9541345 412 6 7550 2.5 9.0 5.8 0.9 7586 chr3L 9533759 intergenic not near genes chr3L 9537552 intergenic not near genes chr3L 9541345 intergenic not near genes chr3L_6_9535001 chr3L_9535001 RAL-897 1083 chr3L 9550620 9550632 chr3L 9550843 9550855 6 223 6.5 8.0 7.2 0.7 235 chr3L 9550620 intron CG42673 + chr3L 9550738 intron CG42673 + chr3L 9550855 intron CG42673 + chr3L_6_9550001 chr3L_9550001 RAL-897 1084 chr3L 9571921 9571935 chr3L 9572268 9572283 jockey 4 348 8.0 5.5 6.8 0.5 362 chr3L 9571921 intron CG42673 + chr3L 9572102 intron CG42673 + chr3L 9572283 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-897 1085 chr3L 9575908 9575948 chr3L 9580986 9581026 jockey 14 5075 9.0 5.5 7.2 1.7 5118 chr3L 9575908 intron CG42673 + chr3L 9578467 intron CG42673 + chr3L 9581026 intron CG42673 + chr3L_14_9575001 chr3L_9575001 RAL-897 1086 chr3L 9639039 9639060 chr3L 9639124 9639145 9 83 0.0 3.0 1.5 3.6 106 chr3L 9639039 intron fry - chr3L 9639092 intron fry - chr3L 9639145 intron fry - chr3L_9_9635001 chr3L_9635001 RAL-897 1087 chr3L 9654941 9654954 chr3L 9655317 9655330 6 376 0.0 0.5 0.2 5.0 389 chr3L 9654941 intron,intron fry -,CG33696 + chr3L 9655136 intron,intron fry -,CG33696 + chr3L 9655330 intron,intron fry -,CG33696 + chr3L_6_9655001 chr3L_9655001 RAL-897 1088 chr3L 9744349 9744371 chr3L 9744426 9744448 6 76 14.0 15.0 14.5 0.4 99 chr3L 9744349 intron,5` UTR CG42268 -,CR44348 + chr3L 9744398 intron,5` UTR CG42268 -,CR44348 + chr3L 9744448 intron CG42268 - chr3L_6_9740001 chr3L_9740001 RAL-897 1089 chr3L 9871193 9871223 chr3L 9871289 9871319 10 96 1.0 2.5 1.8 3.6 126 chr3L 9871193 intergenic not near genes chr3L 9871256 intergenic not near genes chr3L 9871319 intergenic not near genes chr3L_10_9870001 chr3L_9870001 RAL-897 1090 chr3L 9881394 9881409 chr3L 9881861 9881867 4 464 5.0 0.0 2.5 1.1 473 chr3L 9881394 intron CG34382 + chr3L 9881630 intron CG34382 + chr3L 9881867 intron CG34382 + chr3L_4_9880001 chr3L_9880001 RAL-897 1091 chr3L 9929676 9929701 chr3L 9938455 9938461 roo 6 8776 4.0 9.0 6.5 0.8 8785 chr3L 9929676 intron CG34356 + chr3L 9934068 intron CG34356 + chr3L 9938461 intron CG34356 + chr3L_6_9930001 chr3L_9930001 RAL-897 1092 chr3L 9940493 9940502 chr3L 9940603 9940612 8 111 9.0 2.0 5.5 1.2 119 chr3L 9940493 intron CG34356 + chr3L 9940552 intron CG34356 + chr3L 9940612 intron CG34356 + chr3L_8_9940001 chr3L_9940001 RAL-897 1093 chr3L 10003154 10003175 chr3L 10003250 10003271 8 96 4.0 5.0 4.5 1.5 117 chr3L 10003154 intron dpr6 + chr3L 10003212 intron dpr6 + chr3L 10003271 intron dpr6 + chr3L_8_10000001 chr3L_10000001 RAL-897 1094 chr3L 10017312 10017333 chr3L 10017606 10017611 8 297 4.0 3.5 3.8 1.7 299 chr3L 10017312 intron dpr6 + chr3L 10017462 intron dpr6 + chr3L 10017611 intron dpr6 + chr3L_8_10015001 chr3L_10015001 RAL-897 1095 chr3L 10032551 10032568 chr3L 10032637 10032655 4 87 0.0 1.0 0.5 2.7 104 chr3L 10032551 intron dpr6 + chr3L 10032603 intron dpr6 + chr3L 10032655 intron dpr6 + chr3L_4_10030001 chr3L_10030001 RAL-897 1096 chr3L 10145054 10145086 chr3L 10145223 10145255 6 169 2.0 1.5 1.8 2.1 201 chr3L 10145054 intergenic not near genes chr3L 10145154 intergenic not near genes chr3L 10145255 intergenic not near genes chr3L_6_10145001 chr3L_10145001 RAL-897 1097 chr3L 10161430 10161459 chr3L 10161508 10161517 8 74 1.5 2.0 1.8 2.9 87 chr3L 10161430 intron dpr10 - chr3L 10161474 intron dpr10 - chr3L 10161517 intron dpr10 - chr3L_8_10160001 chr3L_10160001 RAL-897 1098 chr3L 10174140 10174176 chr3L 10174227 10174263 19 84 2.5 0.0 1.2 8.6 123 chr3L 10174140 intron dpr10 - chr3L 10174202 intron dpr10 - chr3L 10174263 intron dpr10 - chr3L_19_10170001 chr3L_10170001 RAL-897 1099 chr3L 10214737 10214830 chr3L 10214824 10214932 10 94 0.0 0.0 0.0 10.0 195 chr3L 10214737 intergenic not near genes chr3L 10214834 intergenic not near genes chr3L 10214932 intergenic not near genes chr3L_10_10210001 chr3L_10210001 RAL-897 1100 chr3L 10222761 10222776 chr3L 10222827 10222856 6 78 0.5 8.0 4.2 1.2 95 chr3L 10222761 intron scramb1 - chr3L 10222808 intron scramb1 - chr3L 10222856 intron scramb1 - chr3L_6_10220001 chr3L_10220001 RAL-897 1101 chr3L 10300057 10300073 chr3L 10300149 10300165 4 92 1.0 5.0 3.0 1.0 108 chr3L 10300057 intergenic not near genes chr3L 10300111 intergenic not near genes chr3L 10300165 intergenic not near genes chr3L_4_10300001 chr3L_10300001 RAL-897 1102 chr3L 10308752 10308774 chr3L 10308829 10308851 17 77 5.0 6.5 5.8 2.5 99 chr3L 10308752 intergenic not near genes chr3L 10308802 intergenic not near genes chr3L 10308851 intergenic not near genes chr3L_17_10305001 chr3L_10305001 RAL-897 1103 chr3L 10310354 10310378 chr3L 10310451 10310475 6 96 3.5 3.0 3.2 1.4 121 chr3L 10310354 intergenic not near genes chr3L 10310414 intergenic not near genes chr3L 10310475 intergenic not near genes chr3L_6_10310001 chr3L_10310001 RAL-897 1104 chr3L 10314125 10314159 chr3L 10314211 10314245 6 85 3.5 2.5 3.0 1.5 120 chr3L 10314125 intergenic not near genes chr3L 10314185 intergenic not near genes chr3L 10314245 intergenic not near genes chr3L_6_10310001 chr3L_10310001 RAL-897 1105 chr3L 10414971 10414975 chr3L 10417322 10417345 Doc 5 2361 0.5 3.0 1.8 1.8 2374 chr3L 10414971 intergenic CG12362 + chr3L 10416158 intergenic not near genes chr3L 10417345 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-897 1106 chr3L 10417567 10417603 chr3L 10417644 10417680 21 74 9.5 5.0 7.2 2.6 113 chr3L 10417567 intergenic not near genes chr3L 10417624 intergenic not near genes chr3L 10417680 intergenic not near genes chr3L_21_10415001 chr3L_10415001 RAL-897 1107 chr3L 10425423 10425448 chr3L 10425498 10425523 6 75 2.0 1.5 1.8 2.1 100 chr3L 10425423 intergenic not near genes chr3L 10425473 intergenic not near genes chr3L 10425523 intergenic not near genes chr3L_6_10425001 chr3L_10425001 RAL-897 1108 chr3L 10497920 10497954 chr3L 10498235 10498268 11 315 4.5 1.0 2.8 2.9 348 chr3L 10497920 intron A2bp1 + chr3L 10498094 intron A2bp1 + chr3L 10498268 intron A2bp1 + chr3L_11_10495001 chr3L_10495001 RAL-897 1109 chr3L 10553103 10553128 chr3L 10553185 10553201 11 79 4.0 4.5 4.2 2.1 98 chr3L 10553103 intron A2bp1 + chr3L 10553152 intron A2bp1 + chr3L 10553201 intron A2bp1 + chr3L_11_10550001 chr3L_10550001 RAL-897 1110 chr3L 10658082 10658209 chr3L 10658159 10658336 12 106 1.0 1.0 1.0 6.0 254 chr3L 10658082 intron CG32066 - chr3L 10658209 intron CG32066 - chr3L 10658336 intron CG32066 - chr3L_12_10655001 chr3L_10655001 RAL-897 1111 chr3L 10658969 10658997 chr3L 10659250 10659278 5 281 6.5 1.5 4.0 1.0 309 chr3L 10658969 intron CG32066 - chr3L 10659124 intron CG32066 - chr3L 10659278 intron CG32066 - chr3L_5_10655001 chr3L_10655001 RAL-897 1112 chr3L 10673704 10673737 chr3L 10673877 10673910 6 173 4.0 5.5 4.8 1.0 206 chr3L 10673704 intron simj + chr3L 10673807 intron simj + chr3L 10673910 intron simj + chr3L_6_10670001 chr3L_10670001 RAL-897 1113 chr3L 10746348 10746384 chr3L 10746432 10746451 11 82 3.0 4.0 3.5 2.4 103 chr3L 10746348 intergenic not near genes chr3L 10746400 intergenic not near genes chr3L 10746451 intergenic not near genes chr3L_11_10745001 chr3L_10745001 RAL-897 1114 chr3L 10937850 10937876 chr3L 10937927 10937952 12 76 2.5 4.5 3.5 2.7 102 chr3L 10937850 intergenic not near genes chr3L 10937901 intergenic not near genes chr3L 10937952 intergenic not near genes chr3L_12_10935001 chr3L_10935001 RAL-897 1115 chr3L 11083503 11083537 chr3L 11083601 11083635 10 98 3.0 2.0 2.5 2.9 132 chr3L 11083503 intron JIL-1 - chr3L 11083569 intron JIL-1 - chr3L 11083635 intron JIL-1 - chr3L_10_11080001 chr3L_11080001 RAL-897 1116 chr3L 11085690 11085700 chr3L 11085773 11085782 5 83 3.0 4.0 3.5 1.1 92 chr3L 11085690 exon JIL-1 - chr3L 11085736 intron JIL-1 - chr3L 11085782 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-897 1117 chr3L 11087057 11087088 chr3L 11088846 11088877 S-element 19 1788 0.5 3.5 2.0 6.3 1820 chr3L 11087057 intron JIL-1 - chr3L 11087967 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_19_11085001 chr3L_11085001 RAL-897 1118 chr3L 11105292 11105327 chr3L 11107003 11107024 X-element 11 1709 2.0 6.0 4.0 2.2 1732 chr3L 11105292 intergenic not near genes chr3L 11106158 intergenic not near genes chr3L 11107024 3` UTR CG32073 - chr3L_11_11105001 chr3L_11105001 RAL-897 1119 chr3L 11145545 11145552 chr3L 11145633 11145640 4 88 0.0 4.5 2.2 1.2 95 chr3L 11145545 intron CG32082 + chr3L 11145592 intron CG32082 + chr3L 11145640 intron CG32082 + chr3L_4_11145001 chr3L_11145001 RAL-897 1120 chr3L 11264462 11264495 chr3L 11271414 11271424 17.6 6 6948 5.5 3.0 4.2 1.2 6962 chr3L 11264462 intergenic not near genes chr3L 11267943 intergenic not near genes chr3L 11271424 intergenic not near genes chr3L_6_11265001 chr3L_11265001 RAL-897 1121 chr3L 11277463 11277483 chr3L 11278458 11278463 Rt1a 8 991 2.0 7.5 4.8 1.4 1000 chr3L 11277463 intergenic not near genes chr3L 11277963 intergenic not near genes chr3L 11278463 intergenic not near genes chr3L_8_11275001 chr3L_11275001 RAL-897 1122 chr3L 11427130 11427148 chr3L 11427206 11427224 6 74 3.0 2.5 2.8 1.6 94 chr3L 11427130 intergenic not near genes chr3L 11427177 intergenic not near genes chr3L 11427224 intergenic not near genes chr3L_6_11425001 chr3L_11425001 RAL-897 1123 chr3L 11474622 11474659 chr3L 11474711 11474747 13 87 3.5 4.0 3.8 2.7 125 chr3L 11474622 intergenic Vha16-2 + chr3L 11474684 intergenic Vha16-2 + chr3L 11474747 intergenic Vha16-2 + chr3L_13_11470001 chr3L_11470001 RAL-897 1124 chr3L 11549590 11549609 chr3L 11549816 11549835 10 224 6.0 2.0 4.0 2.0 245 chr3L 11549590 intron Mob2 - chr3L 11549712 intron Mob2 - chr3L 11549835 intron Mob2 - chr3L_10_11545001 chr3L_11545001 RAL-897 1125 chr3L 11560788 11560811 chr3L 11560866 11560889 7 78 4.5 1.0 2.8 1.8 101 chr3L 11560788 intron Mob2 - chr3L 11560838 intron Mob2 - chr3L 11560889 intron Mob2 - chr3L_7_11560001 chr3L_11560001 RAL-897 1126 chr3L 11564791 11564812 chr3L 11572415 11572431 412 6 7622 6.5 7.5 7.0 0.8 7640 chr3L 11564791 exon CG33267 + chr3L 11568611 intron CG33267 + chr3L 11572431 exon CG33267 + chr3L_6_11565001 chr3L_11565001 RAL-897 1127 chr3L 11723092 11723110 chr3L 11727887 11727905 Doc 4 4790 4.5 3.0 3.8 0.8 4813 chr3L 11723092 3` UTR Bmcp + chr3L 11725498 intron Bmcp + chr3L 11727905 3` UTR Bmcp + chr3L_4_11725001 chr3L_11725001 RAL-897 1128 chr3L 11740134 11740155 chr3L 11740231 11740231 9 92 11.5 9.0 10.2 0.8 97 chr3L 11740134 intron CG6024 - chr3L 11740182 intron CG6024 - chr3L 11740231 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-897 1129 chr3L 11744012 11744038 chr3L 11744120 11744145 13 107 5.5 0.0 2.8 3.4 133 chr3L 11744012 exon CG6024 - chr3L 11744078 intron CG6024 - chr3L 11744145 intron CG6024 - chr3L_13_11740001 chr3L_11740001 RAL-897 1130 chr3L 11755186 11755196 chr3L 11755265 11755273 4 78 9.0 7.0 8.0 0.4 87 chr3L 11755186 intron CG6024 - chr3L 11755230 intron CG6024 - chr3L 11755273 intron CG6024 - chr3L_4_11755001 chr3L_11755001 RAL-897 1131 chr3L 11811458 11811489 chr3L 11811536 11811561 7 76 2.5 5.5 4.0 1.4 103 chr3L 11811458 intron CG42255 - chr3L 11811510 intron CG42255 - chr3L 11811561 exon CG42255 - chr3L_7_11810001 chr3L_11810001 RAL-897 1132 chr3L 11850139 11850167 chr3L 11850234 11850262 13 93 4.5 0.0 2.2 4.1 123 chr3L 11850139 intergenic not near genes chr3L 11850200 intergenic CG44837 - chr3L 11850262 intergenic CG44837 - chr3L_13_11850001 chr3L_11850001 RAL-897 1133 chr3L 11864552 11864585 chr3L 11865847 11865880 pogo 16 1294 3.0 1.5 2.2 5.0 1328 chr3L 11864552 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865880 intron CG44837 - chr3L_16_11865001 chr3L_11865001 RAL-897 1134 chr3L 11901575 11901594 chr3L 11901705 11901724 8 124 2.5 7.5 5.0 1.3 149 chr3L 11901575 intron CG44837 - chr3L 11901650 intron CG44837 - chr3L 11901724 intron CG44837 - chr3L_8_11900001 chr3L_11900001 RAL-897 1135 chr3L 11936611 11936632 chr3L 11936689 11936711 7 78 1.0 9.0 5.0 1.2 100 chr3L 11936611 intron CG44837 - chr3L 11936661 intron CG44837 - chr3L 11936711 intron CG44837 - chr3L_7_11935001 chr3L_11935001 RAL-897 1136 chr3L 11943495 11943521 chr3L 11943596 11943622 7 101 0.5 1.5 1.0 3.5 127 chr3L 11943495 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943622 intergenic CG5883 -,Rpt4R + chr3L_7_11940001 chr3L_11940001 RAL-897 1137 chr3L 12013684 12013938 chr3L 12013784 12014029 12 92 4.0 28.0 16.0 0.7 345 chr3L 12013684 intron rols - chr3L 12013856 intron rols - chr3L 12014029 intron rols - chr3L_12_12010001 chr3L_12010001 RAL-897 1138 chr3L 12075425 12075446 chr3L 12075514 12075535 5 89 3.5 0.0 1.8 1.8 110 chr3L 12075425 intron Sema-5c - chr3L 12075480 intron Sema-5c - chr3L 12075535 intron Sema-5c - chr3L_5_12075001 chr3L_12075001 RAL-897 1139 chr3L 12089082 12089106 chr3L 12089162 12089186 9 80 5.5 3.0 4.2 1.7 104 chr3L 12089082 3` UTR CG17154 + chr3L 12089134 3` UTR CG17154 + chr3L 12089186 3` UTR CG17154 + chr3L_9_12085001 chr3L_12085001 RAL-897 1140 chr3L 12304093 12304116 chr3L 12304169 12304170 13 72 4.5 7.0 5.8 1.9 77 chr3L 12304093 intergenic not near genes chr3L 12304132 intergenic not near genes chr3L 12304170 intergenic not near genes chr3L_13_12300001 chr3L_12300001 RAL-897 1141 chr3L 12326378 12326408 chr3L 12326465 12326473 7 84 5.5 0.0 2.8 1.8 95 chr3L 12326378 intergenic not near genes chr3L 12326426 intergenic not near genes chr3L 12326473 intergenic not near genes chr3L_7_12325001 chr3L_12325001 RAL-897 1142 chr3L 12353921 12353941 chr3L 12354010 12354030 14 86 3.5 3.0 3.2 3.3 109 chr3L 12353921 intergenic not near genes chr3L 12353976 intergenic not near genes chr3L 12354030 intergenic not near genes chr3L_14_12350001 chr3L_12350001 RAL-897 1143 chr3L 12353942 12353953 chr3L 12354009 12354042 8 80 3.0 2.5 2.8 2.1 100 chr3L 12353942 intergenic not near genes chr3L 12353992 intergenic not near genes chr3L 12354042 intergenic not near genes chr3L_8_12350001 chr3L_12350001 RAL-897 1144 chr3L 12467252 12467284 chr3L 12467337 12467354 7 83 0.0 0.0 0.0 7.0 102 chr3L 12467252 intron eyg - chr3L 12467303 intron eyg - chr3L 12467354 intron eyg - chr3L_7_12465001 chr3L_12465001 RAL-897 1145 chr3L 12491704 12491735 chr3L 12491787 12491787 11 79 1.0 4.5 2.8 2.9 83 chr3L 12491704 intergenic CG10657 -,CR45682 + chr3L 12491746 intergenic CG10657 -,CR45682 + chr3L 12491787 intergenic CG10657 -,CR45682 + chr3L_11_12490001 chr3L_12490001 RAL-897 1146 chr3L 12565414 12565442 chr3L 12565494 12565503 12 78 6.0 2.0 4.0 2.4 89 chr3L 12565414 intron sowah - chr3L 12565458 intron sowah - chr3L 12565503 intron sowah - chr3L_12_12565001 chr3L_12565001 RAL-897 1147 chr3L 12578045 12578068 chr3L 12578132 12578156 6 88 1.0 0.5 0.8 3.3 111 chr3L 12578045 intergenic not near genes chr3L 12578100 intergenic not near genes chr3L 12578156 intergenic not near genes chr3L_6_12575001 chr3L_12575001 RAL-897 1148 chr3L 12647951 12647974 chr3L 12648027 12648032 6 73 2.5 1.0 1.8 2.1 81 chr3L 12647951 5` UTR CR32111 + chr3L 12647992 5` UTR CR32111 + chr3L 12648032 5` UTR CR32111 + chr3L_6_12645001 chr3L_12645001 RAL-897 1149 chr3L 12705438 12705452 chr3L 12705519 12705520 6 77 7.0 6.5 6.8 0.8 82 chr3L 12705438 intron mirr + chr3L 12705479 intron mirr + chr3L 12705520 intron mirr + chr3L_6_12705001 chr3L_12705001 RAL-897 1150 chr3L 12706642 12706649 chr3L 12706769 12706776 4 127 2.5 1.0 1.8 1.4 134 chr3L 12706642 intron mirr + chr3L 12706709 intron mirr + chr3L 12706776 intron mirr + chr3L_4_12705001 chr3L_12705001 RAL-897 1151 chr3L 12788418 12788441 chr3L 12788538 12788561 10 120 2.0 4.0 3.0 2.5 143 chr3L 12788418 intron Atg1 - chr3L 12788490 intron Atg1 - chr3L 12788561 exon Atg1 - chr3L_10_12785001 chr3L_12785001 RAL-897 1152 chr3L 12829733 12829765 chr3L 12830537 12830541 11 799 6.0 0.0 3.0 2.8 808 chr3L 12829733 intron CG10960 - chr3L 12830137 intron CG10960 - chr3L 12830541 intron CG10960 - chr3L_11_12830001 chr3L_12830001 RAL-897 1153 chr3L 12834662 12834696 chr3L 12834745 12834768 15 81 5.5 6.5 6.0 2.1 106 chr3L 12834662 intron CG10960 - chr3L 12834715 intron CG10960 - chr3L 12834768 intron CG10960 - chr3L_15_12830001 chr3L_12830001 RAL-897 1154 chr3L 12874922 12874962 chr3L 12877214 12877254 jockey 14 2291 4.5 3.5 4.0 2.8 2332 chr3L 12874922 intergenic not near genes chr3L 12876088 intergenic not near genes chr3L 12877254 intergenic not near genes chr3L_14_12875001 chr3L_12875001 RAL-897 1155 chr3L 12894800 12894818 chr3L 12894878 12894896 6 78 9.0 6.0 7.5 0.7 96 chr3L 12894800 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894896 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 RAL-897 1156 chr3L 12900655 12900669 chr3L 12900955 12900969 6 300 3.0 3.0 3.0 1.5 314 chr3L 12900655 intergenic not near genes chr3L 12900812 intergenic CG12520 - chr3L 12900969 intergenic CG12520 - chr3L_6_12900001 chr3L_12900001 RAL-897 1157 chr3L 12919278 12919292 chr3L 12924747 12924755 Rt1c 6 5468 4.5 4.5 4.5 1.1 5477 chr3L 12919278 intergenic not near genes chr3L 12922016 intergenic not near genes chr3L 12924755 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-897 1158 chr3L 12919293 12919313 chr3L 12924746 12924758 Rt1c 9 5459 2.0 4.5 3.2 2.1 5465 chr3L 12919293 intergenic not near genes chr3L 12922026 intergenic not near genes chr3L 12924758 intergenic not near genes chr3L_9_12920001 chr3L_12920001 RAL-897 1159 chr3L 12932000 12932038 chr3L 12932098 12932134 20 94 4.0 6.0 5.0 3.3 134 chr3L 12932000 intergenic not near genes chr3L 12932067 intergenic not near genes chr3L 12932134 intergenic not near genes chr3L_20_12930001 chr3L_12930001 RAL-897 1160 chr3L 12955143 12955163 chr3L 12955219 12955239 10 76 0.5 6.0 3.2 2.4 96 chr3L 12955143 intergenic CG10752 - chr3L 12955191 intergenic not near genes chr3L 12955239 intergenic not near genes chr3L_10_12955001 chr3L_12955001 RAL-897 1161 chr3L 12957786 12957818 chr3L 12962267 12962300 copia 14 4480 2.5 3.0 2.8 3.7 4514 chr3L 12957786 intergenic not near genes chr3L 12960043 intergenic not near genes chr3L 12962300 intergenic not near genes chr3L_14_12960001 chr3L_12960001 RAL-897 1162 chr3L 13069558 13069588 chr3L 13069637 13069665 6 79 1.5 3.5 2.5 1.7 107 chr3L 13069558 intergenic not near genes chr3L 13069612 intergenic not near genes chr3L 13069665 intergenic not near genes chr3L_6_13065001 chr3L_13065001 RAL-897 1163 chr3L 13085070 13085076 chr3L 13085132 13085155 4 75 3.5 2.0 2.8 1.1 85 chr3L 13085070 intergenic not near genes chr3L 13085112 intergenic not near genes chr3L 13085155 intergenic not near genes chr3L_4_13085001 chr3L_13085001 RAL-897 1164 chr3L 13161777 13161792 chr3L 13161853 13161868 7 76 4.0 6.5 5.2 1.1 91 chr3L 13161777 intergenic not near genes chr3L 13161822 intergenic not near genes chr3L 13161868 intergenic not near genes chr3L_7_13160001 chr3L_13160001 RAL-897 1165 chr3L 13178296 13178304 chr3L 13178389 13178399 5 94 9.0 0.0 4.5 0.9 103 chr3L 13178296 intergenic not near genes chr3L 13178348 intergenic not near genes chr3L 13178399 intergenic not near genes chr3L_5_13175001 chr3L_13175001 RAL-897 1166 chr3L 13181026 13181054 chr3L 13181353 13181381 16 326 3.5 2.0 2.8 4.2 355 chr3L 13181026 intergenic not near genes chr3L 13181204 intergenic not near genes chr3L 13181381 intergenic not near genes chr3L_16_13180001 chr3L_13180001 RAL-897 1167 chr3L 13206235 13206265 chr3L 13206317 13206331 14 79 4.5 3.0 3.8 2.9 96 chr3L 13206235 intergenic not near genes chr3L 13206283 intergenic not near genes chr3L 13206331 intergenic not near genes chr3L_14_13205001 chr3L_13205001 RAL-897 1168 chr3L 13223214 13223231 chr3L 13223291 13223308 6 76 0.0 7.0 3.5 1.3 94 chr3L 13223214 intergenic not near genes chr3L 13223261 intergenic not near genes chr3L 13223308 intergenic not near genes chr3L_6_13220001 chr3L_13220001 RAL-897 1169 chr3L 13231686 13231702 chr3L 13231841 13231856 4 155 2.5 2.0 2.2 1.2 170 chr3L 13231686 intron caps + chr3L 13231771 intron caps + chr3L 13231856 intron caps + chr3L_4_13230001 chr3L_13230001 RAL-897 1170 chr3L 13280305 13280327 chr3L 13280399 13280431 9 100 7.5 1.0 4.2 1.7 126 chr3L 13280305 intergenic not near genes chr3L 13280368 intergenic not near genes chr3L 13280431 intergenic not near genes chr3L_9_13280001 chr3L_13280001 RAL-897 1171 chr3L 13296519 13296546 chr3L 13296610 13296637 6 91 4.5 2.5 3.5 1.3 118 chr3L 13296519 intergenic Sfp70A4 -,CR45253 + chr3L 13296578 3` UTR Sfp70A4 - chr3L 13296637 3` UTR Sfp70A4 - chr3L_6_13295001 chr3L_13295001 RAL-897 1172 chr3L 13299391 13299418 chr3L 13299482 13299509 4 91 1.5 0.5 1.0 2.0 118 chr3L 13299391 intergenic CG42481 -,CG43147 - chr3L 13299450 intergenic CG43147 -,CG42481 - chr3L 13299509 intergenic CG43147 -,CG42481 - chr3L_4_13295001 chr3L_13295001 RAL-897 1173 chr3L 13301252 13301278 chr3L 13301334 13301342 6 79 0.0 0.0 0.0 6.0 90 chr3L 13301252 intergenic SP + chr3L 13301297 intergenic SP + chr3L 13301342 intergenic SP + chr3L_6_13300001 chr3L_13300001 RAL-897 1174 chr3L 13305691 13305709 chr3L 13305796 13305814 4 105 3.0 8.5 5.8 0.6 123 chr3L 13305691 intergenic not near genes chr3L 13305752 intergenic not near genes chr3L 13305814 intergenic not near genes chr3L_4_13305001 chr3L_13305001 RAL-897 1175 chr3L 13338343 13338362 chr3L 13338457 13338477 12 114 5.0 0.0 2.5 3.4 134 chr3L 13338343 intergenic not near genes chr3L 13338410 intergenic not near genes chr3L 13338477 intergenic not near genes chr3L_12_13335001 chr3L_13335001 RAL-897 1176 chr3L 13432291 13432322 chr3L 13432390 13432421 15 97 5.0 6.0 5.5 2.3 130 chr3L 13432291 intron CG10713 - chr3L 13432356 intron CG10713 - chr3L 13432421 intron CG10713 - chr3L_15_13430001 chr3L_13430001 RAL-897 1177 chr3L 13477011 13477028 chr3L 13477088 13477104 5 77 0.5 1.5 1.0 2.5 93 chr3L 13477011 intergenic not near genes chr3L 13477058 intergenic stv + chr3L 13477104 intergenic stv + chr3L_5_13475001 chr3L_13475001 RAL-897 1178 chr3L 13525157 13525186 chr3L 13532951 13532981 roo 15 7793 7.0 8.0 7.5 1.8 7824 chr3L 13525157 intergenic not near genes chr3L 13529069 intergenic not near genes chr3L 13532981 intergenic not near genes chr3L_15_13525001 chr3L_13525001 RAL-897 1179 chr3L 13569195 13569224 chr3L 13569291 13569323 15 96 5.0 2.0 3.5 3.3 128 chr3L 13569195 intron bru-3 - chr3L 13569259 intron bru-3 - chr3L 13569323 intron bru-3 - chr3L_15_13565001 chr3L_13565001 RAL-897 1180 chr3L 13596035 13596058 chr3L 13596150 13596172 6 114 3.0 1.0 2.0 2.0 137 chr3L 13596035 intron bru-3 - chr3L 13596104 intron bru-3 - chr3L 13596172 intron bru-3 - chr3L_6_13595001 chr3L_13595001 RAL-897 1181 chr3L 13626689 13626713 chr3L 13626773 13626797 6 84 4.5 4.5 4.5 1.1 108 chr3L 13626689 intron bru-3 - chr3L 13626743 intron bru-3 - chr3L 13626797 intron bru-3 - chr3L_6_13625001 chr3L_13625001 RAL-897 1182 chr3L 13629530 13629549 chr3L 13629638 13629659 13 109 3.5 9.0 6.2 1.8 129 chr3L 13629530 intron bru-3 - chr3L 13629594 intron bru-3 - chr3L 13629659 intron bru-3 - chr3L_13_13625001 chr3L_13625001 RAL-897 1183 chr3L 13648889 13648911 chr3L 13648979 13649001 9 89 10.0 3.0 6.5 1.2 112 chr3L 13648889 intron bru-3 - chr3L 13648945 intron bru-3 - chr3L 13649001 intron bru-3 - chr3L_9_13645001 chr3L_13645001 RAL-897 1184 chr3L 13740036 13740054 chr3L 13740128 13740135 10 90 3.5 6.5 5.0 1.7 99 chr3L 13740036 intron bru-3 - chr3L 13740086 intron bru-3 - chr3L 13740135 intron bru-3 - chr3L_10_13740001 chr3L_13740001 RAL-897 1185 chr3L 13745291 13745304 chr3L 13745380 13745390 7 87 3.5 0.0 1.8 2.5 99 chr3L 13745291 intron bru-3 - chr3L 13745340 intron bru-3 - chr3L 13745390 intron bru-3 - chr3L_7_13745001 chr3L_13745001 RAL-897 1186 chr3L 13774639 13774668 chr3L 13774724 13774754 8 86 3.5 4.5 4.0 1.6 115 chr3L 13774639 intron bru-3 - chr3L 13774696 intron bru-3 - chr3L 13774754 intron bru-3 - chr3L_8_13770001 chr3L_13770001 RAL-897 1187 chr3L 13804543 13804577 chr3L 13822829 13822862 roo 12 18284 2.5 3.0 2.8 3.2 18319 chr3L 13804543 intergenic not near genes chr3L 13813702 intergenic not near genes chr3L 13822862 intergenic not near genes chr3L_12_13810001 chr3L_13810001 RAL-897 1188 chr3L 13871741 13871764 chr3L 13871816 13871842 15 76 1.5 5.5 3.5 3.3 101 chr3L 13871741 3` UTR dysc - chr3L 13871792 3` UTR dysc - chr3L 13871842 3` UTR dysc - chr3L_15_13870001 chr3L_13870001 RAL-897 1189 chr3L 13898230 13898245 chr3L 13898313 13898329 6 84 5.5 3.0 4.2 1.2 99 chr3L 13898230 intron dysc - chr3L 13898280 intron dysc - chr3L 13898329 intron dysc - chr3L_6_13895001 chr3L_13895001 RAL-897 1190 chr3L 13901583 13901601 chr3L 13901660 13901670 6 76 0.5 5.0 2.8 1.6 87 chr3L 13901583 intron dysc - chr3L 13901626 intron dysc - chr3L 13901670 intron dysc - chr3L_6_13900001 chr3L_13900001 RAL-897 1191 chr3L 13990900 13990927 chr3L 13990976 13991000 7 75 8.5 4.0 6.2 1.0 100 chr3L 13990900 intron CG17364 - chr3L 13990950 intron CG17364 - chr3L 13991000 intron CG17364 - chr3L_7_13990001 chr3L_13990001 RAL-897 1192 chr3L 14245574 14245594 chr3L 14245662 14245687 1360 9 91 4.0 5.0 4.5 1.6 113 chr3L 14245574 3` UTR CR44561 - chr3L 14245630 3` UTR CR44561 - chr3L 14245687 3` UTR CR44561 - chr3L_9_14245001 chr3L_14245001 RAL-897 1193 chr3L 14258131 14258165 chr3L 14258475 14258508 8 344 0.5 2.0 1.2 3.6 377 chr3L 14258131 intergenic not near genes chr3L 14258320 intergenic not near genes chr3L 14258508 intergenic not near genes chr3L_8_14255001 chr3L_14255001 RAL-897 1194 chr3L 14263361 14263371 chr3L 14263983 14263993 5 622 0.0 0.5 0.2 4.2 632 chr3L 14263361 intergenic not near genes chr3L 14263677 intergenic not near genes chr3L 14263993 intergenic not near genes chr3L_5_14260001 chr3L_14260001 RAL-897 1195 chr3L 14282596 14282603 chr3L 14282670 14282683 8 78 7.5 6.0 6.8 1.0 87 chr3L 14282596 intron fz + chr3L 14282640 intron fz + chr3L 14282683 intron fz + chr3L_8_14280001 chr3L_14280001 RAL-897 1196 chr3L 14295993 14296015 chr3L 14296467 14296501 roo 9 481 3.5 3.0 3.2 2.1 508 chr3L 14295993 intron fz + chr3L 14296247 intron fz + chr3L 14296501 intron fz + chr3L_9_14295001 chr3L_14295001 RAL-897 1197 chr3L 14308121 14308150 chr3L 14308437 14308465 12 314 3.0 3.5 3.2 2.9 344 chr3L 14308121 intron fz + chr3L 14308293 intron fz + chr3L 14308465 intron fz + chr3L_12_14305001 chr3L_14305001 RAL-897 1198 chr3L 14312041 14312047 chr3L 14316855 14316859 X-element 4 4812 3.5 8.5 6.0 0.6 4818 chr3L 14312041 exon fz + chr3L 14314450 intron fz + chr3L 14316859 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-897 1199 chr3L 14338297 14338327 chr3L 14338393 14338423 8 96 0.0 2.0 1.0 4.0 126 chr3L 14338297 intron fz + chr3L 14338360 intron fz + chr3L 14338423 intron fz + chr3L_8_14335001 chr3L_14335001 RAL-897 1200 chr3L 14399182 14399190 chr3L 14399271 14399279 4 89 4.5 0.0 2.2 1.2 97 chr3L 14399182 intergenic not near genes chr3L 14399230 intergenic not near genes chr3L 14399279 intergenic not near genes chr3L_4_14395001 chr3L_14395001 RAL-897 1201 chr3L 14451299 14451308 chr3L 14451380 14451389 6 81 7.5 2.5 5.0 1.0 90 chr3L 14451299 intron bbg - chr3L 14451344 intron bbg - chr3L 14451389 intron bbg - chr3L_6_14450001 chr3L_14450001 RAL-897 1202 chr3L 14468446 14468465 chr3L 14473652 14473671 copia 5 5206 3.0 3.0 3.0 1.2 5225 chr3L 14468446 intron bbg - chr3L 14471058 intron bbg - chr3L 14473671 intron bbg - chr3L_5_14470001 chr3L_14470001 RAL-897 1203 chr3L 14483971 14483987 chr3L 14484057 14484073 9 82 10.5 5.5 8.0 1.0 102 chr3L 14483971 intron bbg - chr3L 14484022 intron bbg - chr3L 14484073 intron bbg - chr3L_9_14480001 chr3L_14480001 RAL-897 1204 chr3L 14487617 14487638 chr3L 14487693 14487697 6 73 7.0 0.0 3.5 1.3 80 chr3L 14487617 intron bbg - chr3L 14487657 intron bbg - chr3L 14487697 intron bbg - chr3L_6_14485001 chr3L_14485001 RAL-897 1205 chr3L 14522100 14522123 chr3L 14522198 14522222 6 98 1.0 1.0 1.0 3.0 122 chr3L 14522100 intron bbg - chr3L 14522161 intron bbg - chr3L 14522222 intron bbg - chr3L_6_14520001 chr3L_14520001 RAL-897 1206 chr3L 14565749 14565773 chr3L 14565840 14565864 5 91 2.5 3.5 3.0 1.2 115 chr3L 14565749 intergenic not near genes chr3L 14565806 intergenic not near genes chr3L 14565864 intergenic not near genes chr3L_5_14565001 chr3L_14565001 RAL-897 1207 chr3L 14574950 14575177 chr3L 14575140 14575255 16 119 0.0 0.5 0.2 13.3 305 chr3L 14574950 intergenic not near genes chr3L 14575102 intergenic not near genes chr3L 14575255 intergenic not near genes chr3L_16_14575001 chr3L_14575001 RAL-897 1208 chr3L 14721196 14721208 chr3L 14723023 14723050 Rt1c 7 1835 6.0 9.5 7.8 0.8 1854 chr3L 14721196 intron ome + chr3L 14722123 intron ome + chr3L 14723050 intron ome + chr3L_7_14720001 chr3L_14720001 RAL-897 1209 chr3L 14725599 14725627 chr3L 14728592 14728620 Doc 5 2991 2.0 4.5 3.2 1.2 3021 chr3L 14725599 intron ome + chr3L 14727110 intron ome + chr3L 14728620 intron ome + chr3L_5_14725001 chr3L_14725001 RAL-897 1210 chr3L 14785045 14785073 chr3L 14785150 14785178 9 103 1.0 7.0 4.0 1.8 133 chr3L 14785045 intron bmm - chr3L 14785112 intron bmm - chr3L 14785178 intron bmm - chr3L_9_14785001 chr3L_14785001 RAL-897 1211 chr3L 14840376 14840391 chr3L 14840476 14840493 8 102 1.0 7.0 4.0 1.6 117 chr3L 14840376 intron CG17839 + chr3L 14840434 intron CG17839 + chr3L 14840493 intron CG17839 + chr3L_8_14840001 chr3L_14840001 RAL-897 1212 chr3L 14867623 14867629 chr3L 14867707 14867713 5 84 7.0 5.0 6.0 0.7 90 chr3L 14867623 intron CG17839 + chr3L 14867668 intron CG17839 + chr3L 14867713 intron CG17839 + chr3L_5_14865001 chr3L_14865001 RAL-897 1213 chr3L 14867632 14867648 chr3L 14867706 14867731 4 81 3.0 5.0 4.0 0.8 99 chr3L 14867632 intron CG17839 + chr3L 14867682 intron CG17839 + chr3L 14867731 intron CG17839 + chr3L_4_14865001 chr3L_14865001 RAL-897 1214 chr3L 14895029 14895064 chr3L 14895169 14895204 10 139 3.0 2.0 2.5 2.9 175 chr3L 14895029 intergenic not near genes chr3L 14895116 intergenic not near genes chr3L 14895204 intergenic not near genes chr3L_10_14895001 chr3L_14895001 RAL-897 1215 chr3L 14917665 14917695 chr3L 14917742 14917778 12 78 4.5 5.5 5.0 2.0 113 chr3L 14917665 intron DCX-EMAP + chr3L 14917722 intron DCX-EMAP + chr3L 14917778 intron DCX-EMAP + chr3L_12_14915001 chr3L_14915001 RAL-897 1216 chr3L 14922105 14922118 chr3L 14922212 14922226 5 107 10.0 2.0 6.0 0.7 121 chr3L 14922105 intron DCX-EMAP + chr3L 14922166 intron DCX-EMAP + chr3L 14922226 intron DCX-EMAP + chr3L_5_14920001 chr3L_14920001 RAL-897 1217 chr3L 14922119 14922131 chr3L 14922208 14922236 4 102 4.5 2.0 3.2 1.0 117 chr3L 14922119 intron DCX-EMAP + chr3L 14922178 intron DCX-EMAP + chr3L 14922236 intron DCX-EMAP + chr3L_4_14920001 chr3L_14920001 RAL-897 1218 chr3L 14933449 14933460 chr3L 14933531 14933541 4 82 1.5 8.0 4.8 0.7 92 chr3L 14933449 intron DCX-EMAP + chr3L 14933495 intron DCX-EMAP + chr3L 14933541 intron DCX-EMAP + chr3L_4_14930001 chr3L_14930001 RAL-897 1219 chr3L 15069805 15069813 chr3L 15069933 15069937 4 126 24.5 10.5 17.5 0.2 132 chr3L 15069805 exon cp309 - chr3L 15069871 intron cp309 - chr3L 15069937 exon cp309 - chr3L_4_15065001 chr3L_15065001 RAL-897 1220 chr3L 15085073 15085081 chr3L 15086217 15086218 1360 5 1155 0.0 4.0 2.0 1.7 1145 chr3L 15085073 intron cp309 - chr3L 15085646 intron cp309 - chr3L 15086218 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-897 1221 chr3L 15094863 15094884 chr3L 15094939 15094961 8 77 4.0 5.0 4.5 1.5 98 chr3L 15094863 intergenic cp309 -,CG6945 -,Aats-gly + chr3L 15094912 intergenic cp309 -,CG6945 -,Aats-gly + chr3L 15094961 intergenic Aats-gly +,cp309 -,CG6945 - chr3L_8_15090001 chr3L_15090001 RAL-897 1222 chr3L 15164015 15164050 chr3L 15164242 15164272 9 226 3.0 0.5 1.8 3.2 257 chr3L 15164015 intergenic CG7011 - chr3L 15164144 intergenic not near genes chr3L 15164272 intergenic not near genes chr3L_9_15160001 chr3L_15160001 RAL-897 1223 chr3L 15164864 15165039 chr3L 15164948 15165138 5 84 0.0 2.5 1.2 2.3 274 chr3L 15164864 intergenic not near genes chr3L 15165001 intergenic not near genes chr3L 15165138 intergenic not near genes chr3L_5_15160001 chr3L_15160001 RAL-897 1224 chr3L 15185748 15185769 chr3L 15185826 15185847 8 79 2.0 6.0 4.0 1.6 99 chr3L 15185748 intergenic not near genes chr3L 15185798 intergenic not near genes chr3L 15185847 intergenic not near genes chr3L_8_15185001 chr3L_15185001 RAL-897 1225 chr3L 15192774 15192798 chr3L 15192860 15192887 11 86 7.5 5.0 6.2 1.5 113 chr3L 15192774 intergenic not near genes chr3L 15192830 intergenic not near genes chr3L 15192887 intergenic not near genes chr3L_11_15190001 chr3L_15190001 RAL-897 1226 chr3L 15209550 15209584 chr3L 15210249 15210283 15 697 3.5 4.0 3.8 3.1 733 chr3L 15209550 intergenic not near genes chr3L 15209916 intergenic not near genes chr3L 15210283 intergenic not near genes chr3L_15_15205001 chr3L_15205001 RAL-897 1227 chr3L 15233560 15233581 chr3L 15233641 15233662 6 81 1.0 1.5 1.2 2.7 102 chr3L 15233560 intergenic not near genes chr3L 15233611 intergenic not near genes chr3L 15233662 intergenic not near genes chr3L_6_15230001 chr3L_15230001 RAL-897 1228 chr3L 15265769 15265802 chr3L 15265849 15265882 9 79 2.5 4.0 3.2 2.1 113 chr3L 15265769 intergenic not near genes chr3L 15265826 intergenic not near genes chr3L 15265882 intergenic not near genes chr3L_9_15265001 chr3L_15265001 RAL-897 1229 chr3L 15295766 15295795 chr3L 15298609 15298638 gypsy5 4 2842 4.5 2.0 3.2 1.0 2872 chr3L 15295766 intergenic not near genes chr3L 15297202 intergenic not near genes chr3L 15298638 intergenic Best4 + chr3L_4_15295001 chr3L_15295001 RAL-897 1230 chr3L 15384955 15384989 chr3L 15385083 15385111 20 124 4.0 2.5 3.2 4.8 156 chr3L 15384955 intergenic not near genes chr3L 15385033 intergenic not near genes chr3L 15385111 intergenic not near genes chr3L_20_15385001 chr3L_15385001 RAL-897 1231 chr3L 15393661 15393691 chr3L 15393863 15393893 13 202 2.5 2.0 2.2 4.1 232 chr3L 15393661 intergenic not near genes chr3L 15393777 intergenic not near genes chr3L 15393893 intergenic not near genes chr3L_13_15390001 chr3L_15390001 RAL-897 1232 chr3L 15399852 15399867 chr3L 15400003 15400018 4 151 7.5 6.5 7.0 0.5 166 chr3L 15399852 intergenic not near genes chr3L 15399935 intergenic not near genes chr3L 15400018 intergenic not near genes chr3L_4_15395001 chr3L_15395001 RAL-897 1233 chr3L 15406020 15406055 chr3L 15406102 15406138 7 80 0.5 5.0 2.8 1.8 118 chr3L 15406020 intergenic not near genes chr3L 15406079 intergenic not near genes chr3L 15406138 intergenic not near genes chr3L_7_15405001 chr3L_15405001 RAL-897 1234 chr3L 15423762 15423783 chr3L 15426603 15426626 opus 7 2843 2.5 4.0 3.2 1.7 2864 chr3L 15423762 intergenic not near genes chr3L 15425194 intergenic not near genes chr3L 15426626 intergenic not near genes chr3L_7_15425001 chr3L_15425001 RAL-897 1235 chr3L 15444649 15444685 chr3L 15444743 15444769 19 91 3.5 3.5 3.5 4.2 120 chr3L 15444649 intergenic not near genes chr3L 15444709 intergenic not near genes chr3L 15444769 intergenic not near genes chr3L_19_15440001 chr3L_15440001 RAL-897 1236 chr3L 15466040 15466139 chr3L 15466121 15466235 11 91 0.0 0.0 0.0 11.0 195 chr3L 15466040 intergenic not near genes chr3L 15466138 intergenic not near genes chr3L 15466235 intergenic not near genes chr3L_11_15465001 chr3L_15465001 RAL-897 1237 chr3L 15493314 15493330 chr3L 15493409 15493415 4 92 3.0 0.0 1.5 1.6 101 chr3L 15493314 exon CG12355 - chr3L 15493364 intron CG12355 - chr3L 15493415 intron CG12355 - chr3L_4_15490001 chr3L_15490001 RAL-897 1238 chr3L 15511975 15512007 chr3L 15512053 15512066 12 76 4.5 3.0 3.8 2.5 91 chr3L 15511975 intron Eip71CD + chr3L 15512020 intron Eip71CD + chr3L 15512066 intron Eip71CD + chr3L_12_15510001 chr3L_15510001 RAL-897 1239 chr3L 15536613 15536652 chr3L 15536694 15536733 17 81 4.0 4.5 4.2 3.3 120 chr3L 15536613 intron CrebA + chr3L 15536673 intron CrebA + chr3L 15536733 intron CrebA + chr3L_17_15535001 chr3L_15535001 RAL-897 1240 chr3L 15594626 15594653 chr3L 15594701 15594729 10 76 2.5 1.5 2.0 3.3 103 chr3L 15594626 intron RhoGAP71E + chr3L 15594678 intron RhoGAP71E + chr3L 15594729 intron RhoGAP71E + chr3L_10_15590001 chr3L_15590001 RAL-897 1241 chr3L 15715780 15715812 chr3L 15715857 15715889 14 76 6.0 3.0 4.5 2.5 109 chr3L 15715780 intergenic not near genes chr3L 15715834 intergenic not near genes chr3L 15715889 intergenic not near genes chr3L_14_15715001 chr3L_15715001 RAL-897 1242 chr3L 15768999 15769012 chr3L 15769110 15769123 5 111 2.5 0.0 1.2 2.3 124 chr3L 15768999 intergenic not near genes chr3L 15769061 intergenic not near genes chr3L 15769123 intergenic not near genes chr3L_5_15765001 chr3L_15765001 RAL-897 1243 chr3L 15809164 15809184 chr3L 15809248 15809268 5 81 4.0 6.0 5.0 0.8 104 chr3L 15809164 intergenic CG6244 +,CG13445 + chr3L 15809216 intergenic CG13445 +,CG6244 + chr3L 15809268 intergenic CG13445 +,CG6244 + chr3L_5_15805001 chr3L_15805001 RAL-897 1244 chr3L 15832252 15832283 chr3L 15832333 15832364 17 80 5.5 2.0 3.8 3.5 112 chr3L 15832252 intergenic CG12713 +,dbo + chr3L 15832308 intergenic CG12713 +,dbo + chr3L 15832364 intergenic CG12713 +,dbo + chr3L_17_15830001 chr3L_15830001 RAL-897 1245 chr3L 15833802 15833828 chr3L 15834041 15834067 4 239 7.0 10.0 8.5 0.4 265 chr3L 15833802 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15833934 3` UTR,3` UTR CG12713 +,CG18081 - chr3L 15834067 3` UTR CG18081 - chr3L_4_15830001 chr3L_15830001 RAL-897 1246 chr3L 15883195 15883221 chr3L 15883488 15883503 10 291 2.0 6.0 4.0 2.0 308 chr3L 15883195 intron pHCl - chr3L 15883349 intron pHCl - chr3L 15883503 intron pHCl - chr3L_10_15880001 chr3L_15880001 RAL-897 1247 chr3L 15899239 15899258 chr3L 15899790 15899805 jockey 4 552 4.0 3.0 3.5 0.9 566 chr3L 15899239 intergenic pHCl - chr3L 15899522 intergenic pHCl - chr3L 15899805 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-897 1248 chr3L 15916848 15916864 chr3L 15916925 15916941 6 77 2.5 2.0 2.2 1.9 93 chr3L 15916848 intron sff - chr3L 15916894 intron sff - chr3L 15916941 intron sff - chr3L_6_15915001 chr3L_15915001 RAL-897 1249 chr3L 15929203 15929224 chr3L 15938350 15938371 roo 9 9147 3.5 5.0 4.2 1.7 9168 chr3L 15929203 intron Pka-C3 - chr3L 15933787 intron Pka-C3 - chr3L 15938371 intron Pka-C3 - chr3L_9_15930001 chr3L_15930001 RAL-897 1250 chr3L 15946504 15946516 chr3L 15946590 15946601 6 86 4.5 0.0 2.2 1.9 97 chr3L 15946504 intron Pka-C3 - chr3L 15946552 intron Pka-C3 - chr3L 15946601 intron Pka-C3 - chr3L_6_15945001 chr3L_15945001 RAL-897 1251 chr3L 15958916 15958924 chr3L 15958991 15959001 5 76 7.0 11.5 9.2 0.5 85 chr3L 15958916 5` UTR CG17032 + chr3L 15958958 5` UTR CG17032 + chr3L 15959001 5` UTR CG17032 + chr3L_5_15955001 chr3L_15955001 RAL-897 1252 chr3L 16070744 16070752 chr3L 16070819 16070828 6 76 8.0 3.5 5.8 0.9 84 chr3L 16070744 intron Mbs + chr3L 16070786 intron Mbs + chr3L 16070828 intron Mbs + chr3L_6_16070001 chr3L_16070001 RAL-897 1253 chr3L 16162607 16162630 chr3L 16162680 16162714 9 82 3.5 5.5 4.5 1.6 107 chr3L 16162607 intron CG5151 - chr3L 16162660 intron CG5151 - chr3L 16162714 intron CG5151 - chr3L_9_16160001 chr3L_16160001 RAL-897 1254 chr3L 16184107 16184131 chr3L 16188926 16188950 X-element 5 4819 4.5 2.5 3.5 1.1 4843 chr3L 16184107 intergenic not near genes chr3L 16186528 intergenic not near genes chr3L 16188950 intergenic not near genes chr3L_5_16185001 chr3L_16185001 RAL-897 1255 chr3L 16220045 16220058 chr3L 16220145 16220158 5 98 4.5 8.0 6.2 0.7 113 chr3L 16220045 intergenic not near genes chr3L 16220102 intergenic not near genes chr3L 16220158 intergenic not near genes chr3L_5_16220001 chr3L_16220001 RAL-897 1256 chr3L 16236342 16236363 chr3L 16236457 16236478 4 114 3.0 1.5 2.2 1.2 136 chr3L 16236342 3` UTR l(3)72Dp + chr3L 16236410 3` UTR l(3)72Dp + chr3L 16236478 3` UTR l(3)72Dp + chr3L_4_16235001 chr3L_16235001 RAL-897 1257 chr3L 16443851 16443877 chr3L 16446190 16446217 Doc 13 2338 2.0 4.0 3.0 3.2 2366 chr3L 16443851 intron,intron CG33158 +,dsx-c73A - chr3L 16445034 intron,intron CG33158 +,dsx-c73A - chr3L 16446217 intron,intron CG33158 +,dsx-c73A - chr3L_13_16445001 chr3L_16445001 RAL-897 1258 chr3L 16493991 16494013 chr3L 16494508 16494519 jockey 17 515 4.5 5.0 4.8 2.9 528 chr3L 16493991 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494255 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494519 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_17_16490001 chr3L_16490001 RAL-897 1259 chr3L 16503648 16503657 chr3L 16503724 16503724 5 73 4.0 4.0 4.0 1.0 76 chr3L 16503648 intron CG43373 - chr3L 16503686 intron CG43373 - chr3L 16503724 intron CG43373 - chr3L_5_16500001 chr3L_16500001 RAL-897 1260 chr3L 16514578 16514601 chr3L 16514675 16514698 9 96 2.5 3.5 3.0 2.2 120 chr3L 16514578 intron CG43373 - chr3L 16514638 intron CG43373 - chr3L 16514698 intron CG43373 - chr3L_9_16510001 chr3L_16510001 RAL-897 1261 chr3L 16533569 16533586 chr3L 16533675 16533697 6 108 2.0 3.5 2.8 1.6 128 chr3L 16533569 intron CG43373 - chr3L 16533633 intron CG43373 - chr3L 16533697 intron CG43373 - chr3L_6_16530001 chr3L_16530001 RAL-897 1262 chr3L 16540060 16540086 chr3L 16540146 16540160 8 82 3.0 4.5 3.8 1.7 100 chr3L 16540060 intron CG43373 - chr3L 16540110 intron CG43373 - chr3L 16540160 intron CG43373 - chr3L_8_16540001 chr3L_16540001 RAL-897 1263 chr3L 16563233 16563255 chr3L 16563314 16563321 6 78 2.0 0.5 1.2 2.7 88 chr3L 16563233 intergenic Mipp1 - chr3L 16563277 intergenic Mipp1 - chr3L 16563321 intergenic Mipp1 - chr3L_6_16560001 chr3L_16560001 RAL-897 1264 chr3L 16581765 16581796 chr3L 16582129 16582158 12 362 5.0 5.0 5.0 2.0 393 chr3L 16581765 5` UTR CR43727 + chr3L 16581962 5` UTR CR43727 + chr3L 16582158 5` UTR CR43727 + chr3L_12_16580001 chr3L_16580001 RAL-897 1265 chr3L 16616513 16616542 chr3L 16621836 16621869 297 8 5325 4.0 5.0 4.5 1.5 5356 chr3L 16616513 3` UTR Abl - chr3L 16619191 3` UTR Abl - chr3L 16621869 3` UTR Abl - chr3L_8_16615001 chr3L_16615001 RAL-897 1266 chr3L 16652681 16652709 chr3L 16652760 16652787 7 78 2.5 2.0 2.2 2.2 106 chr3L 16652681 intron Baldspot - chr3L 16652734 intron Baldspot - chr3L 16652787 intron Baldspot - chr3L_7_16650001 chr3L_16650001 RAL-897 1267 chr3L 16684030 16684048 chr3L 16689249 16689269 copia 5 5221 2.0 2.0 2.0 1.7 5239 chr3L 16684030 intron,intron Lasp -,CG43954 - chr3L 16686650 intron,intron Lasp -,CG43954 - chr3L 16689269 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_5_16685001 chr3L_16685001 RAL-897 1268 chr3L 16698386 16698413 chr3L 16698475 16698510 10 91 4.5 3.0 3.8 2.1 124 chr3L 16698386 intron,intron Lasp -,CG43954 - chr3L 16698448 intron,intron Lasp -,CG43954 - chr3L 16698510 intron,intron Lasp -,CG43954 - chr3L_10_16695001 chr3L_16695001 RAL-897 1269 chr3L 16699475 16699501 chr3L 16699783 16699809 9 307 1.0 8.5 4.8 1.6 334 chr3L 16699475 intron,intron Lasp -,CG43954 - chr3L 16699642 intron,intron Lasp -,CG43954 - chr3L 16699809 intron,intron Lasp -,CG43954 - chr3L_9_16695001 chr3L_16695001 RAL-897 1270 chr3L 16743951 16743966 chr3L 16744065 16744080 8 114 6.0 1.5 3.8 1.7 129 chr3L 16743951 intergenic not near genes chr3L 16744016 intergenic not near genes chr3L 16744080 intergenic not near genes chr3L_8_16740001 chr3L_16740001 RAL-897 1271 chr3L 16772497 16772513 chr3L 16772587 16772594 7 89 5.5 4.5 5.0 1.2 97 chr3L 16772497 intron Nrt + chr3L 16772546 intron Nrt + chr3L 16772594 intron Nrt + chr3L_7_16770001 chr3L_16770001 RAL-897 1272 chr3L 16786977 16787001 chr3L 16787051 16787077 8 76 0.0 4.5 2.2 2.5 100 chr3L 16786977 intergenic Int6 - chr3L 16787027 intergenic Int6 - chr3L 16787077 intergenic Int6 -,CG9674 - chr3L_8_16785001 chr3L_16785001 RAL-897 1273 chr3L 16818747 16818776 chr3L 16818823 16818843 11 72 3.0 4.0 3.5 2.4 96 chr3L 16818747 intron,intron nudC +,CG13024 - chr3L 16818795 intron,intron nudC +,CG13024 - chr3L 16818843 intron,intron nudC +,CG13024 - chr3L_11_16815001 chr3L_16815001 RAL-897 1274 chr3L 16830776 16830785 chr3L 16830859 16830868 6 82 1.0 3.5 2.2 1.9 92 chr3L 16830776 intergenic not near genes chr3L 16830822 intergenic not near genes chr3L 16830868 intergenic not near genes chr3L_6_16830001 chr3L_16830001 RAL-897 1275 chr3L 16845022 16845044 chr3L 16845134 16845157 7 111 3.0 3.0 3.0 1.8 135 chr3L 16845022 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845157 intergenic CG9669 -,CG9715 + chr3L_7_16845001 chr3L_16845001 RAL-897 1276 chr3L 16887630 16887661 chr3L 16887707 16887737 9 72 4.5 2.5 3.5 2.0 107 chr3L 16887630 intron Lmpt + chr3L 16887684 intron Lmpt + chr3L 16887737 intron Lmpt + chr3L_9_16885001 chr3L_16885001 RAL-897 1277 chr3L 16945734 16945761 chr3L 16954879 16954882 roo 14 9145 8.0 2.0 5.0 2.3 9148 chr3L 16945734 exon Obp73a + chr3L 16950308 intergenic not near genes chr3L 16954882 5` UTR Nc73EF + chr3L_14_16950001 chr3L_16950001 RAL-897 1278 chr3L 16972057 16972071 chr3L 16972133 16972147 6 76 3.5 0.5 2.0 2.0 90 chr3L 16972057 intron Exn + chr3L 16972102 intron Exn + chr3L 16972147 intron Exn + chr3L_6_16970001 chr3L_16970001 RAL-897 1279 chr3L 17026790 17026823 chr3L 17026870 17026902 14 79 3.0 2.0 2.5 4.0 112 chr3L 17026790 exon Fit2 + chr3L 17026846 3` UTR Fit2 + chr3L 17026902 3` UTR Fit2 + chr3L_14_17025001 chr3L_17025001 RAL-897 1280 chr3L 17085003 17085038 chr3L 17094151 17094187 roo 13 9149 3.5 5.0 4.2 2.5 9184 chr3L 17085003 intron Rbp6 - chr3L 17089595 intron Rbp6 - chr3L 17094187 intron Rbp6 - chr3L_13_17085001 chr3L_17085001 RAL-897 1281 chr3L 17118869 17118891 chr3L 17118943 17118975 17 78 4.0 7.0 5.5 2.6 106 chr3L 17118869 intron Rbp6 - chr3L 17118922 intron Rbp6 - chr3L 17118975 intron Rbp6 - chr3L_17_17115001 chr3L_17115001 RAL-897 1282 chr3L 17120653 17120685 chr3L 17120729 17120761 14 76 3.0 2.5 2.8 3.7 108 chr3L 17120653 intron Rbp6 - chr3L 17120707 intron Rbp6 - chr3L 17120761 intron Rbp6 - chr3L_14_17120001 chr3L_17120001 RAL-897 1283 chr3L 17135462 17135474 chr3L 17135567 17135577 5 104 4.5 2.0 3.2 1.2 115 chr3L 17135462 intron Rbp6 - chr3L 17135520 intron Rbp6 - chr3L 17135577 intron Rbp6 - chr3L_5_17135001 chr3L_17135001 RAL-897 1284 chr3L 17199149 17199158 chr3L 17199260 17199269 4 111 4.5 3.0 3.8 0.8 120 chr3L 17199149 intron Rbp6 - chr3L 17199209 intron Rbp6 - chr3L 17199269 intron Rbp6 - chr3L_4_17195001 chr3L_17195001 RAL-897 1285 chr3L 17237384 17237408 chr3L 17237535 17237560 7 152 4.0 1.5 2.8 1.8 176 chr3L 17237384 intron Rbp6 - chr3L 17237472 intron Rbp6 - chr3L 17237560 intron Rbp6 - chr3L_7_17235001 chr3L_17235001 RAL-897 1286 chr3L 17247521 17247532 chr3L 17248961 17248984 7 1450 3.5 29.5 16.5 0.4 1463 chr3L 17247521 intron CR43870 + chr3L 17248252 intron CR43870 + chr3L 17248984 intron CR43870 + chr3L_7_17245001 chr3L_17245001 RAL-897 1287 chr3L 17247570 17247586 chr3L 17249069 17249100 8 1504 3.0 29.5 16.2 0.5 1530 chr3L 17247570 intron CR43870 + chr3L 17248335 intron CR43870 + chr3L 17249100 intron CR43870 + chr3L_8_17245001 chr3L_17245001 RAL-897 1288 chr3L 17367443 17367456 chr3L 17367537 17367550 5 94 4.0 5.5 4.8 0.9 107 chr3L 17367443 intergenic CR45688 +,Cad74A - chr3L 17367496 intergenic CR45688 +,Cad74A - chr3L 17367550 intergenic CR45688 +,Cad74A - chr3L_5_17365001 chr3L_17365001 RAL-897 1289 chr3L 17510746 17510764 chr3L 17510830 17510848 15 84 4.0 6.5 5.2 2.4 102 chr3L 17510746 exon Oatp74D + chr3L 17510797 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_15_17510001 chr3L_17510001 RAL-897 1290 chr3L 17516978 17517011 chr3L 17524536 17524546 412 16 7552 4.0 7.0 5.5 2.5 7568 chr3L 17516978 intron CG7564 + chr3L 17520762 intron CG7564 + chr3L 17524546 3` UTR CG7564 + chr3L_16_17520001 chr3L_17520001 RAL-897 1291 chr3L 17585328 17585343 chr3L 17585654 17585669 4 326 3.5 12.0 7.8 0.5 341 chr3L 17585328 intron Eip74EF - chr3L 17585498 intron Eip74EF - chr3L 17585669 intron Eip74EF - chr3L_4_17585001 chr3L_17585001 RAL-897 1292 chr3L 17789845 17789873 chr3L 17789921 17789949 4 76 1.0 2.0 1.5 1.6 104 chr3L 17789845 intergenic not near genes chr3L 17789897 intergenic not near genes chr3L 17789949 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-897 1293 chr3L 17965500 17965507 chr3L 17965625 17965631 6 125 4.5 12.0 8.2 0.7 131 chr3L 17965500 intron Eip75B - chr3L 17965566 intron Eip75B - chr3L 17965631 intron Eip75B - chr3L_6_17965001 chr3L_17965001 RAL-897 1294 chr3L 18047715 18047740 chr3L 18056772 18056797 roo 6 9057 1.5 1.0 1.2 2.7 9082 chr3L 18047715 intron Eip75B - chr3L 18052256 intron Eip75B - chr3L 18056797 intron Eip75B - chr3L_6_18050001 chr3L_18050001 RAL-897 1295 chr3L 18119659 18119662 chr3L 18119757 18119760 4 98 0.0 6.0 3.0 1.0 101 chr3L 18119659 intron CG7341 + chr3L 18119710 intron CG7341 + chr3L 18119760 intron CG7341 + chr3L_4_18115001 chr3L_18115001 RAL-897 1296 chr3L 18119663 18119675 chr3L 18119751 18119773 6 96 0.0 5.0 2.5 1.7 110 chr3L 18119663 intron CG7341 + chr3L 18119718 intron CG7341 + chr3L 18119773 intron CG7341 + chr3L_6_18115001 chr3L_18115001 RAL-897 1297 chr3L 18150318 18150331 chr3L 18150414 18150428 5 97 7.0 3.5 5.2 0.8 110 chr3L 18150318 intron CG7330 + chr3L 18150373 intron CG7330 + chr3L 18150428 intron CG7330 + chr3L_5_18150001 chr3L_18150001 RAL-897 1298 chr3L 18221099 18221132 chr3L 18221180 18221213 12 79 1.5 3.0 2.2 3.8 114 chr3L 18221099 intergenic not near genes chr3L 18221156 intergenic not near genes chr3L 18221213 intergenic not near genes chr3L_12_18220001 chr3L_18220001 RAL-897 1299 chr3L 18283930 18283964 chr3L 18284007 18284041 9 77 2.5 1.5 2.0 3.0 111 chr3L 18283930 intergenic not near genes chr3L 18283986 intergenic not near genes chr3L 18284041 intergenic not near genes chr3L_9_18280001 chr3L_18280001 RAL-897 1300 chr3L 18359597 18359628 chr3L 18359689 18359720 6 91 3.0 2.5 2.8 1.6 123 chr3L 18359597 intergenic not near genes chr3L 18359658 intergenic not near genes chr3L 18359720 intergenic not near genes chr3L_6_18355001 chr3L_18355001 RAL-897 1301 chr3L 18375971 18376005 chr3L 18376056 18376090 11 83 3.0 1.0 2.0 3.7 119 chr3L 18375971 intergenic not near genes chr3L 18376030 intergenic not near genes chr3L 18376090 intergenic not near genes chr3L_11_18375001 chr3L_18375001 RAL-897 1302 chr3L 18420065 18420097 chr3L 18420148 18420180 14 82 1.0 4.5 2.8 3.7 115 chr3L 18420065 intergenic not near genes chr3L 18420122 intergenic not near genes chr3L 18420180 intergenic not near genes chr3L_14_18420001 chr3L_18420001 RAL-897 1303 chr3L 18445251 18445283 chr3L 18445329 18445360 4 78 0.5 1.5 1.0 2.0 109 chr3L 18445251 intergenic not near genes chr3L 18445306 intergenic not near genes chr3L 18445360 intergenic not near genes chr3L_4_18445001 chr3L_18445001 RAL-897 1304 chr3L 18456279 18456303 chr3L 18456367 18456390 7 88 1.5 5.5 3.5 1.6 111 chr3L 18456279 intergenic CR44670 - chr3L 18456334 intergenic CR44670 - chr3L 18456390 intergenic CR44670 - chr3L_7_18455001 chr3L_18455001 RAL-897 1305 chr3L 18506128 18506157 chr3L 18509591 18509612 F-element 10 3462 2.0 0.5 1.2 4.5 3484 chr3L 18506128 intergenic not near genes chr3L 18507870 intergenic not near genes chr3L 18509612 intergenic not near genes chr3L_10_18505001 chr3L_18505001 RAL-897 1306 chr3L 18528632 18528657 chr3L 18537792 18537818 roo 7 9161 2.0 1.0 1.5 2.8 9186 chr3L 18528632 intergenic not near genes chr3L 18533225 intergenic not near genes chr3L 18537818 intergenic not near genes chr3L_7_18530001 chr3L_18530001 RAL-897 1307 chr3L 18538643 18538643 chr3L 18539123 18539135 4 486 7.0 6.5 6.8 0.5 492 chr3L 18538643 intergenic not near genes chr3L 18538889 intergenic not near genes chr3L 18539135 intergenic not near genes chr3L_4_18535001 chr3L_18535001 RAL-897 1308 chr3L 18538646 18538658 chr3L 18539121 18539151 9 486 3.5 5.0 4.2 1.7 505 chr3L 18538646 intergenic not near genes chr3L 18538898 intergenic not near genes chr3L 18539151 intergenic not near genes chr3L_9_18535001 chr3L_18535001 RAL-897 1309 chr3L 18567026 18567055 chr3L 18567112 18567141 10 85 2.5 4.0 3.2 2.4 115 chr3L 18567026 intron AstC-R1 + chr3L 18567084 intron AstC-R1 + chr3L 18567141 intron AstC-R1 + chr3L_10_18565001 chr3L_18565001 RAL-897 1310 chr3L 18638581 18638610 chr3L 18638675 18638704 6 94 0.5 2.0 1.2 2.7 123 chr3L 18638581 intron MYPT-75D + chr3L 18638642 intron MYPT-75D + chr3L 18638704 intron MYPT-75D + chr3L_6_18635001 chr3L_18635001 RAL-897 1311 chr3L 18645288 18645307 chr3L 18645387 18645405 7 99 2.5 1.0 1.8 2.5 117 chr3L 18645288 intron MYPT-75D + chr3L 18645346 intron MYPT-75D + chr3L 18645405 intron MYPT-75D + chr3L_7_18645001 chr3L_18645001 RAL-897 1312 chr3L 18646904 18646927 chr3L 18647186 18647203 7 277 1.0 0.5 0.8 3.9 299 chr3L 18646904 intron MYPT-75D + chr3L 18647054 intron MYPT-75D + chr3L 18647203 intron MYPT-75D + chr3L_7_18645001 chr3L_18645001 RAL-897 1313 chr3L 18677885 18677920 chr3L 18677980 18678013 19 93 2.0 3.5 2.8 5.0 128 chr3L 18677885 intergenic GNBP1 + chr3L 18677949 intergenic GNBP1 + chr3L 18678013 intergenic GNBP1 + chr3L_19_18675001 chr3L_18675001 RAL-897 1314 chr3L 18679004 18679020 chr3L 18679111 18679114 8 106 6.0 6.0 6.0 1.1 110 chr3L 18679004 intergenic not near genes chr3L 18679059 intergenic not near genes chr3L 18679114 intergenic not near genes chr3L_8_18675001 chr3L_18675001 RAL-897 1315 chr3L 18692691 18692706 chr3L 18692776 18692791 6 84 0.5 0.5 0.5 4.0 100 chr3L 18692691 intergenic not near genes chr3L 18692741 intergenic not near genes chr3L 18692791 intergenic not near genes chr3L_6_18690001 chr3L_18690001 RAL-897 1316 chr3L 18721780 18721801 chr3L 18721871 18721892 9 91 4.0 5.5 4.8 1.6 112 chr3L 18721780 intergenic CG12477 - chr3L 18721836 intergenic CG12477 - chr3L 18721892 3` UTR CG12477 - chr3L_9_18720001 chr3L_18720001 RAL-897 1317 chr3L 18772415 18772437 chr3L 18781095 18781118 roo 12 8680 3.0 7.0 5.0 2.0 8703 chr3L 18772415 intron ftz-f1 - chr3L 18776766 intron ftz-f1 - chr3L 18781118 intron ftz-f1 - chr3L_12_18775001 chr3L_18775001 RAL-897 1318 chr3L 18833780 18833813 chr3L 18834943 18834977 1360 7 1164 1.0 5.5 3.2 1.7 1197 chr3L 18833780 intron Indy - chr3L 18834378 intron Indy - chr3L 18834977 intron Indy - chr3L_7_18830001 chr3L_18830001 RAL-897 1319 chr3L 18885997 18886013 chr3L 18886073 18886089 5 76 2.5 2.0 2.2 1.6 92 chr3L 18885997 intron CG3961 - chr3L 18886043 intron CG3961 - chr3L 18886089 intron CG3961 - chr3L_5_18885001 chr3L_18885001 RAL-897 1320 chr3L 18888258 18888289 chr3L 18888342 18888355 12 83 2.5 4.0 3.2 2.9 97 chr3L 18888258 intron CG3961 - chr3L 18888306 intron CG3961 - chr3L 18888355 intron CG3961 - chr3L_12_18885001 chr3L_18885001 RAL-897 1321 chr3L 18933629 18933658 chr3L 18933723 18933751 4 90 1.5 2.5 2.0 1.3 122 chr3L 18933629 intron CG32204 - chr3L 18933690 intron CG32204 - chr3L 18933751 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-897 1322 chr3L 18078301 18078305 chr3L 18937931 18937951 F-element 7 859633 8.5 10.5 9.5 0.7 859650 chr3L 18078301 intergenic CR45392 + chr3L 18508126 intergenic not near genes chr3L 18937951 intron CG32204 - chr3L_7_18505001 chr3L_18505001 RAL-897 1323 chr3L 18962601 18962617 chr3L 18962681 18962684 4 76 10.0 3.0 6.5 0.5 83 chr3L 18962601 intergenic not near genes chr3L 18962642 intergenic not near genes chr3L 18962684 intergenic not near genes chr3L_4_18960001 chr3L_18960001 RAL-897 1324 chr3L 18969596 18969621 chr3L 18969692 18969704 8 92 6.0 6.0 6.0 1.1 108 chr3L 18969596 intergenic not near genes chr3L 18969650 intergenic not near genes chr3L 18969704 intergenic not near genes chr3L_8_18965001 chr3L_18965001 RAL-897 1325 chr3L 18969622 18969631 chr3L 18969689 18969726 9 84 3.5 5.5 4.5 1.6 104 chr3L 18969622 intergenic not near genes chr3L 18969674 intergenic not near genes chr3L 18969726 intergenic not near genes chr3L_9_18965001 chr3L_18965001 RAL-897 1326 chr3L 19008838 19008868 chr3L 19009175 19009206 jockey 6 338 3.0 7.5 5.2 1.0 368 chr3L 19008838 intron nkd - chr3L 19009022 intron nkd - chr3L 19009206 intron nkd - chr3L_6_19005001 chr3L_19005001 RAL-897 1327 chr3L 19029460 19029465 chr3L 19029560 19029565 7 101 11.0 8.5 9.8 0.6 105 chr3L 19029460 intron nkd - chr3L 19029512 intron nkd - chr3L 19029565 intron nkd - chr3L_7_19025001 chr3L_19025001 RAL-897 1328 chr3L 19029468 19029480 chr3L 19029558 19029582 9 93 5.0 8.0 6.5 1.2 114 chr3L 19029468 intron nkd - chr3L 19029525 intron nkd - chr3L 19029582 intron nkd - chr3L_9_19025001 chr3L_19025001 RAL-897 1329 chr3L 19082041 19082067 chr3L 19082137 19082169 13 100 7.5 4.5 6.0 1.9 128 chr3L 19082041 intron Mkp3 - chr3L 19082105 intron Mkp3 - chr3L 19082169 intron Mkp3 - chr3L_13_19080001 chr3L_19080001 RAL-897 1330 chr3L 19101711 19101742 chr3L 19102083 19102113 11 372 0.5 4.0 2.2 3.4 402 chr3L 19101711 intergenic not near genes chr3L 19101912 intergenic not near genes chr3L 19102113 intergenic not near genes chr3L_11_19100001 chr3L_19100001 RAL-897 1331 chr3L 19115639 19115675 chr3L 19115817 19115818 BS 13 171 8.5 4.0 6.2 1.8 179 chr3L 19115639 intron CG14082 - chr3L 19115728 intron CG14082 - chr3L 19115818 intron CG14082 - chr3L_13_19115001 chr3L_19115001 RAL-897 1332 chr3L 19117047 19117076 chr3L 19124489 19124522 mdg1 15 7444 6.5 4.0 5.2 2.4 7475 chr3L 19117047 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_15_19120001 chr3L_19120001 RAL-897 1333 chr3L 19182388 19182420 chr3L 19182467 19182501 8 80 1.0 3.5 2.2 2.5 113 chr3L 19182388 intron fz2 - chr3L 19182444 intron fz2 - chr3L 19182501 intron fz2 - chr3L_8_19180001 chr3L_19180001 RAL-897 1334 chr3L 19189026 19189062 chr3L 19189146 19189182 16 117 1.5 2.0 1.8 5.7 156 chr3L 19189026 intron fz2 - chr3L 19189104 intron fz2 - chr3L 19189182 intron fz2 - chr3L_16_19185001 chr3L_19185001 RAL-897 1335 chr3L 19208059 19208092 chr3L 19209433 19209466 Doc 18 1370 3.5 3.0 3.2 4.3 1407 chr3L 19208059 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209466 intron fz2 - chr3L_18_19205001 chr3L_19205001 RAL-897 1336 chr3L 19220633 19220633 chr3L 22908066 22908067 9 3687434 30.0 37.5 33.8 0.3 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_9_21060001 chr3L_21060001 RAL-897 1337 chr3L 19262219 19262244 chr3L 19262300 19262326 4 82 2.0 2.0 2.0 1.3 107 chr3L 19262219 3` UTR Bet1 + chr3L 19262272 3` UTR,3` UTR Bet1 +,Max - chr3L 19262326 3` UTR,3` UTR Bet1 +,Max - chr3L_4_19260001 chr3L_19260001 RAL-897 1338 chr3L 19274181 19274211 chr3L 19274260 19274290 19 76 2.5 4.5 3.5 4.2 109 chr3L 19274181 intergenic CG14085 + chr3L 19274236 intergenic CG14085 + chr3L 19274290 intergenic CG14085 + chr3L_19_19270001 chr3L_19270001 RAL-897 1339 chr3L 19282688 19282716 chr3L 19282765 19282794 12 76 3.0 1.0 2.0 4.0 106 chr3L 19282688 3` UTR Gbs-76A - chr3L 19282741 3` UTR Gbs-76A - chr3L 19282794 3` UTR Gbs-76A - chr3L_12_19280001 chr3L_19280001 RAL-897 1340 chr3L 19342765 19342776 chr3L 19342856 19342867 6 91 2.0 3.5 2.8 1.6 102 chr3L 19342765 3` UTR CG32206 - chr3L 19342816 3` UTR CG32206 - chr3L 19342867 3` UTR CG32206 - chr3L_6_19340001 chr3L_19340001 RAL-897 1341 chr3L 19404437 19404465 chr3L 19404522 19404550 17 84 2.0 9.0 5.5 2.6 113 chr3L 19404437 intron CG32206 - chr3L 19404494 intron CG32206 - chr3L 19404550 intron CG32206 - chr3L_17_19400001 chr3L_19400001 RAL-897 1342 chr3L 19417803 19417824 chr3L 19417880 19417900 7 78 9.0 4.5 6.8 0.9 97 chr3L 19417803 intergenic not near genes chr3L 19417852 intergenic not near genes chr3L 19417900 intergenic not near genes chr3L_7_19415001 chr3L_19415001 RAL-897 1343 chr3L 19417828 19417834 chr3L 19417879 19417898 6 68 5.5 4.0 4.8 1.0 70 chr3L 19417828 intergenic not near genes chr3L 19417863 intergenic not near genes chr3L 19417898 intergenic not near genes chr3L_6_19415001 chr3L_19415001 RAL-897 1344 chr3L 19426746 19426781 chr3L 19426824 19426859 13 73 8.0 6.5 7.2 1.6 113 chr3L 19426746 intergenic not near genes chr3L 19426802 intergenic not near genes chr3L 19426859 intergenic not near genes chr3L_13_19425001 chr3L_19425001 RAL-897 1345 chr3L 19488476 19488491 chr3L 19488557 19488573 4 82 7.0 3.0 5.0 0.7 97 chr3L 19488476 intergenic pncr009:3L -,CG32212 + chr3L 19488524 intergenic pncr009:3L -,CG32212 + chr3L 19488573 intergenic pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-897 1346 chr3L 19567575 19567598 chr3L 19567656 19567679 4 82 2.5 1.0 1.8 1.4 104 chr3L 19567575 3` UTR Shal - chr3L 19567627 3` UTR Shal - chr3L 19567679 3` UTR Shal - chr3L_4_19565001 chr3L_19565001 RAL-897 1347 chr3L 19848507 19848530 chr3L 19857694 19857720 roo 11 9189 3.5 6.5 5.0 1.8 9213 chr3L 19848507 intron Papss + chr3L 19853114 intron Papss + chr3L 19857720 intron Papss + chr3L_11_19850001 chr3L_19850001 RAL-897 1348 chr3L 19861822 19861852 chr3L 19863610 19863640 S-element 11 1785 5.5 4.0 4.8 1.9 1818 chr3L 19861822 5` UTR CR45433 + chr3L 19862731 intergenic not near genes chr3L 19863640 intergenic not near genes chr3L_11_19860001 chr3L_19860001 RAL-897 1349 chr3L 19933538 19933559 chr3L 19934360 19934381 8 822 4.0 2.5 3.2 1.9 843 chr3L 19933538 intergenic CR45678 + chr3L 19933960 5` UTR CR45678 + chr3L 19934381 intergenic CR45678 + chr3L_8_19930001 chr3L_19930001 RAL-897 1350 chr3L 19981205 19981227 chr3L 19981285 19981307 6 78 3.0 0.5 1.8 2.1 102 chr3L 19981205 intergenic CG17732 + chr3L 19981256 intergenic CG17732 + chr3L 19981307 intergenic CG17732 + chr3L_6_19980001 chr3L_19980001 RAL-897 1351 chr3L 20143093 20143115 chr3L 20143172 20143195 14 80 2.5 3.5 3.0 3.5 102 chr3L 20143093 intergenic not near genes chr3L 20143144 intergenic not near genes chr3L 20143195 intergenic not near genes chr3L_14_20140001 chr3L_20140001 RAL-897 1352 chr3L 20148282 20148318 chr3L 20148372 20148408 10 90 2.5 4.5 3.5 2.2 126 chr3L 20148282 intergenic not near genes chr3L 20148345 intergenic not near genes chr3L 20148408 intergenic not near genes chr3L_10_20145001 chr3L_20145001 RAL-897 1353 chr3L 20187466 20187482 chr3L 20187545 20187561 4 78 16.5 14.0 15.2 0.2 95 chr3L 20187466 intron CG42674 - chr3L 20187514 intron CG42674 - chr3L 20187561 intron CG42674 - chr3L_4_20185001 chr3L_20185001 RAL-897 1354 chr3L 20257333 20257358 chr3L 20258452 20258478 pogo 6 1120 3.5 5.0 4.2 1.2 1145 chr3L 20257333 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258478 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-897 1355 chr3L 20451275 20451303 chr3L 20451514 20451544 8 241 2.5 4.0 3.2 1.9 269 chr3L 20451275 intron CG5199 - chr3L 20451410 intron CG5199 - chr3L 20451544 intron CG5199 - chr3L_8_20450001 chr3L_20450001 RAL-897 1356 chr3L 20476752 20476784 chr3L 20484351 20484382 springer 7 7597 4.5 3.5 4.0 1.4 7630 chr3L 20476752 3` UTR isoQC + chr3L 20480567 intergenic not near genes chr3L 20484382 3` UTR ZnT77C - chr3L_7_20480001 chr3L_20480001 RAL-897 1357 chr3L 20532438 20532470 chr3L 20532958 20532958 13 509 3.5 6.5 5.0 2.2 520 chr3L 20532438 intron Rcd2 - chr3L 20532698 intron Rcd2 - chr3L 20532958 intron Rcd2 - chr3L_13_20530001 chr3L_20530001 RAL-897 1358 chr3L 20548364 20548384 chr3L 20548453 20548473 9 88 4.0 2.5 3.2 2.1 109 chr3L 20548364 intergenic not near genes chr3L 20548418 intergenic not near genes chr3L 20548473 intergenic not near genes chr3L_9_20545001 chr3L_20545001 RAL-897 1359 chr3L 20590065 20590090 chr3L 20590602 20590625 412 5 535 7.0 6.0 6.5 0.7 560 chr3L 20590065 intergenic not near genes chr3L 20590345 intergenic not near genes chr3L 20590625 intergenic not near genes chr3L_5_20590001 chr3L_20590001 RAL-897 1360 chr3L 20821272 20821311 chr3L 20824740 20824780 NOF 5 3469 1.0 1.5 1.2 2.3 3508 chr3L 20821272 intron Pka-R1 + chr3L 20823026 intron Pka-R1 + chr3L 20824780 intron Pka-R1 + chr3L_5_20820001 chr3L_20820001 RAL-897 1361 chr3L 20825864 20825885 chr3L 20827656 20827682 10 1795 2.5 2.5 2.5 2.9 1818 chr3L 20825864 intron Pka-R1 + chr3L 20826773 intron Pka-R1 + chr3L 20827682 intron Pka-R1 + chr3L_10_20825001 chr3L_20825001 RAL-897 1362 chr3L 20849280 20849301 chr3L 20849359 20849380 8 79 3.0 3.0 3.0 2.0 100 chr3L 20849280 intron CG32432 - chr3L 20849330 intron CG32432 - chr3L 20849380 intron CG32432 - chr3L_8_20845001 chr3L_20845001 RAL-897 1363 chr3L 20881009 20881035 chr3L 20881086 20881112 6 74 4.0 3.0 3.5 1.3 103 chr3L 20881009 intron CG32432 - chr3L 20881060 intron CG32432 - chr3L 20881112 intron CG32432 - chr3L_6_20880001 chr3L_20880001 RAL-897 1364 chr3L 20917092 20917109 chr3L 20917169 20917184 6 76 7.5 4.0 5.8 0.9 92 chr3L 20917092 intergenic not near genes chr3L 20917138 intergenic not near genes chr3L 20917184 intergenic not near genes chr3L_6_20915001 chr3L_20915001 RAL-897 1365 chr3L 20917110 20917120 chr3L 20917165 20917180 7 66 5.0 2.5 3.8 1.5 70 chr3L 20917110 intergenic not near genes chr3L 20917145 intergenic not near genes chr3L 20917180 intergenic not near genes chr3L_7_20915001 chr3L_20915001 RAL-897 1366 chr3L 21014916 21014948 chr3L 21023397 21023428 Tirant 11 8476 3.5 9.5 6.5 1.5 8512 chr3L 21014916 intron skd - chr3L 21019172 intron skd - chr3L 21023428 intron skd - chr3L_11_21015001 chr3L_21015001 RAL-897 1367 chr3L 21082212 21082239 chr3L 21082290 21082293 14 75 3.0 7.5 5.2 2.3 81 chr3L 21082212 intron ko - chr3L 21082252 intron ko - chr3L 21082293 intron ko - chr3L_14_21080001 chr3L_21080001 RAL-897 1368 chr3L 21151862 21151894 chr3L 21156946 21156978 flea 9 5083 3.5 5.0 4.2 1.7 5116 chr3L 21151862 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156978 intron Ac78C - chr3L_9_21150001 chr3L_21150001 RAL-897 1369 chr3L 21243753 21243769 chr3L 21251309 21251330 412 16 7559 5.5 5.5 5.5 2.5 7577 chr3L 21243753 intron Eip78C + chr3L 21247542 intron Eip78C + chr3L 21251330 intron Eip78C + chr3L_16_21245001 chr3L_21245001 RAL-897 1370 chr3L 21301731 21301762 chr3L 21301817 21301848 17 84 10.5 4.0 7.2 2.1 117 chr3L 21301731 5` UTR CR45432 + chr3L 21301790 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301848 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_17_21300001 chr3L_21300001 RAL-897 1371 chr3L 21306151 21306180 chr3L 21315309 21315339 roo 9 9158 0.5 2.5 1.5 3.6 9188 chr3L 21306151 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310745 intron Pc - chr3L 21315339 3` UTR Pc - chr3L_9_21310001 chr3L_21310001 RAL-897 1372 chr3L 21319528 21319554 chr3L 21319617 21319643 5 90 5.5 7.0 6.2 0.7 115 chr3L 21319528 5` UTR Rab26 + chr3L 21319586 5` UTR Rab26 + chr3L 21319643 5` UTR Rab26 + chr3L_5_21315001 chr3L_21315001 RAL-897 1373 chr3L 21407004 21407022 chr3L 21407076 21407099 11 78 6.0 3.5 4.8 1.9 95 chr3L 21407004 intron rgn + chr3L 21407052 intron rgn + chr3L 21407099 intron rgn + chr3L_11_21405001 chr3L_21405001 RAL-897 1374 chr3L 21416064 21416077 chr3L 21416157 21416171 8 93 11.0 7.0 9.0 0.8 107 chr3L 21416064 intron rgn + chr3L 21416118 intron rgn + chr3L 21416171 intron rgn + chr3L_8_21415001 chr3L_21415001 RAL-897 1375 chr3L 21416079 21416088 chr3L 21416156 21416182 4 84 5.0 7.0 6.0 0.6 103 chr3L 21416079 intron rgn + chr3L 21416130 intron rgn + chr3L 21416182 intron rgn + chr3L_4_21415001 chr3L_21415001 RAL-897 1376 chr3L 21492395 21492411 chr3L 21492495 21492512 7 99 4.0 7.0 5.5 1.1 117 chr3L 21492395 intron CG7202 - chr3L 21492454 intron CG7202 - chr3L 21492512 intron CG7202 - chr3L_7_21490001 chr3L_21490001 RAL-897 1377 chr3L 21498840 21498866 chr3L 21500478 21500502 1360 13 1638 6.0 5.0 5.5 2.0 1662 chr3L 21498840 intron Glg1 - chr3L 21499671 intron Glg1 - chr3L 21500502 intron Glg1 - chr3L_13_21495001 chr3L_21495001 RAL-897 1378 chr3L 21749314 21749332 chr3L 21754474 21754492 Doc 10 5160 6.0 4.5 5.2 1.6 5178 chr3L 21749314 intron Syn1 - chr3L 21751903 intron Syn1 - chr3L 21754492 intron Syn1 - chr3L_10_21750001 chr3L_21750001 RAL-897 1379 chr3L 21749334 21749346 chr3L 21754473 21754487 Doc 5 5152 3.0 4.5 3.8 1.0 5153 chr3L 21749334 intron Syn1 - chr3L 21751910 intron Syn1 - chr3L 21754487 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-897 1380 chr3L 21776685 21776702 chr3L 21776771 21776789 8 87 0.0 5.0 2.5 2.3 104 chr3L 21776685 intron,intron CG42689 +,CG42552 + chr3L 21776737 intron,intron CG42689 +,CG42552 + chr3L 21776789 intron,intron CG42689 +,CG42552 + chr3L_8_21775001 chr3L_21775001 RAL-897 1381 chr3L 21840845 21840858 chr3L 21840969 21840982 8 123 12.5 10.0 11.2 0.7 137 chr3L 21840845 intron P5CDh1 - chr3L 21840914 intron P5CDh1 - chr3L 21840982 intron P5CDh1 - chr3L_8_21840001 chr3L_21840001 RAL-897 1382 chr3L 21840860 21840871 chr3L 21840961 21840995 10 115 7.5 8.0 7.8 1.1 135 chr3L 21840860 intron P5CDh1 - chr3L 21840928 intron P5CDh1 - chr3L 21840995 intron P5CDh1 - chr3L_10_21840001 chr3L_21840001 RAL-897 1383 chr3L 21920412 21920439 chr3L 21920498 21920525 15 85 3.5 5.0 4.2 2.9 113 chr3L 21920412 intron mub + chr3L 21920468 intron mub + chr3L 21920525 intron mub + chr3L_15_21920001 chr3L_21920001 RAL-897 1384 chr3L 21950338 21950356 chr3L 21950409 21950432 16 75 9.0 4.0 6.5 2.1 94 chr3L 21950338 exon CG7448 + chr3L 21950385 exon CG7448 + chr3L 21950432 intron CG7448 + chr3L_16_21950001 chr3L_21950001 RAL-897 1385 chr3L 21975680 21975702 chr3L 21975914 21975936 4 232 1.5 5.5 3.5 0.9 256 chr3L 21975680 intron CG7470 + chr3L 21975808 intron CG7470 + chr3L 21975936 intron CG7470 + chr3L_4_21975001 chr3L_21975001 RAL-897 1386 chr3L 21990576 21990604 chr3L 21990771 21990799 16 192 4.0 5.5 4.8 2.8 223 chr3L 21990576 intergenic not near genes chr3L 21990688 intergenic not near genes chr3L 21990799 intergenic not near genes chr3L_16_21990001 chr3L_21990001 RAL-897 1387 chr3L 21994437 21994471 chr3L 21994518 21994552 15 81 2.0 3.0 2.5 4.3 115 chr3L 21994437 intergenic not near genes chr3L 21994494 intergenic not near genes chr3L 21994552 intergenic not near genes chr3L_15_21990001 chr3L_21990001 RAL-897 1388 chr3L 22008854 22008870 chr3L 22008927 22008944 10 75 8.5 6.5 7.5 1.2 90 chr3L 22008854 intergenic not near genes chr3L 22008899 intergenic not near genes chr3L 22008944 intergenic not near genes chr3L_10_22005001 chr3L_22005001 RAL-897 1389 chr3L 22008871 22008880 chr3L 22008926 22008957 7 72 4.0 5.5 4.8 1.2 86 chr3L 22008871 intergenic not near genes chr3L 22008914 intergenic not near genes chr3L 22008957 intergenic not near genes chr3L_7_22005001 chr3L_22005001 RAL-897 1390 chr3L 22092816 22092826 chr3L 22092917 22092927 6 101 3.0 3.5 3.2 1.4 111 chr3L 22092816 intergenic not near genes chr3L 22092872 intergenic not near genes chr3L 22092927 intergenic not near genes chr3L_6_22090001 chr3L_22090001 RAL-897 1391 chr3L 22099676 22099709 chr3L 22105861 22105895 3S18 7 6186 1.0 1.0 1.0 3.5 6219 chr3L 22099676 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105895 intergenic not near genes chr3L_7_22100001 chr3L_22100001 RAL-897 1392 chr3L 22124822 22124833 chr3L 22124903 22124915 5 82 3.0 3.5 3.2 1.2 93 chr3L 22124822 intergenic not near genes chr3L 22124868 intergenic not near genes chr3L 22124915 intergenic not near genes chr3L_5_22120001 chr3L_22120001 RAL-897 1393 chr3L 22130499 22130522 chr3L 22130645 22130668 9 146 2.5 3.5 3.0 2.2 169 chr3L 22130499 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130668 intergenic not near genes chr3L_9_22130001 chr3L_22130001 RAL-897 1394 chr3L 22139521 22139549 chr3L 22139614 22139618 6 88 2.5 3.0 2.8 1.6 97 chr3L 22139521 intron olf413 + chr3L 22139570 intron olf413 + chr3L 22139618 intron olf413 + chr3L_6_22135001 chr3L_22135001 RAL-897 1395 chr3L 22169457 22169487 chr3L 22169550 22169580 17 92 6.0 5.5 5.8 2.5 123 chr3L 22169457 intron olf413 + chr3L 22169518 intron olf413 + chr3L 22169580 intron olf413 + chr3L_17_22165001 chr3L_22165001 RAL-897 1396 chr3L 22361952 22361963 chr3L 22362023 22362040 6 75 6.5 6.0 6.2 0.8 88 chr3L 22361952 intron Ten-m - chr3L 22361996 intron Ten-m - chr3L 22362040 intron Ten-m - chr3L_6_22360001 chr3L_22360001 RAL-897 1397 chr3L 22447194 22447225 chr3L 22447285 22447316 8 88 5.5 2.5 4.0 1.6 122 chr3L 22447194 intergenic not near genes chr3L 22447255 intergenic not near genes chr3L 22447316 intergenic not near genes chr3L_8_22445001 chr3L_22445001 RAL-897 1398 chr3L 22539967 22539976 chr3L 22540048 22540062 4 84 7.0 3.5 5.2 0.6 95 chr3L 22539967 intergenic not near genes chr3L 22540014 intergenic not near genes chr3L 22540062 intergenic not near genes chr3L_4_22540001 chr3L_22540001 RAL-897 1399 chr3L 22539977 22539995 chr3L 22540047 22540079 12 80 3.5 3.5 3.5 2.7 102 chr3L 22539977 intergenic not near genes chr3L 22540028 intergenic not near genes chr3L 22540079 intergenic not near genes chr3L_12_22540001 chr3L_22540001 RAL-897 1400 chr3L 22555770 22555781 chr3L 22563240 22563244 blood 5 7466 7.5 1.5 4.5 0.9 7474 chr3L 22555770 intergenic not near genes chr3L 22559507 intergenic not near genes chr3L 22563244 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-897 1401 chr3L 22555782 22555802 chr3L 22563238 22563241 blood 7 7446 4.5 1.5 3.0 1.8 7459 chr3L 22555782 intergenic not near genes chr3L 22559512 intergenic not near genes chr3L 22563241 intergenic not near genes chr3L_7_22555001 chr3L_22555001 RAL-897 1402 chr3L 22577626 22577649 chr3L 22582414 22582436 Doc 12 4786 5.0 7.0 6.0 1.7 4810 chr3L 22577626 intergenic not near genes chr3L 22580031 intergenic not near genes chr3L 22582436 3` UTR CG14459 - chr3L_12_22580001 chr3L_22580001 RAL-897 1403 chr3L 22617201 22617219 chr3L 22624644 22624671 blood 6 7450 4.0 3.5 3.8 1.2 7470 chr3L 22617201 intron CG14459 - chr3L 22620936 intron CG14459 - chr3L 22624671 intron CG14459 - chr3L_6_22620001 chr3L_22620001 RAL-897 1404 chr3L 22674432 22674465 chr3L 22674510 22674543 7 75 3.0 4.0 3.5 1.6 111 chr3L 22674432 intron CG14457 + chr3L 22674488 intron CG14457 + chr3L 22674543 intron CG14457 + chr3L_7_22670001 chr3L_22670001 RAL-897 1405 chr3L 22761387 22761414 chr3L 22766821 22766848 Ivk 8 5432 3.5 3.0 3.2 1.9 5461 chr3L 22761387 intron SPoCk + chr3L 22764118 intron SPoCk + chr3L 22766848 intron SPoCk + chr3L_8_22760001 chr3L_22760001 RAL-897 1406 chr3L 22850610 22850644 chr3L 22850853 22850887 11 243 2.5 5.0 3.8 2.3 277 chr3L 22850610 intron CR43426 + chr3L 22850748 intron CR43426 + chr3L 22850887 intron CR43426 + chr3L_11_22850001 chr3L_22850001 RAL-897 1407 chr3L 22853465 22853722 chr3L 22853552 22853808 23 83 3.5 8.5 6.0 3.3 343 chr3L 22853465 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853808 5` UTR CR43426 + chr3L_23_22850001 chr3L_22850001 RAL-897 1408 chr3L 22865984 22866012 chr3L 22867117 22867142 Doc 8 1133 4.5 4.5 4.5 1.5 1158 chr3L 22865984 intron CG33170 + chr3L 22866563 intron CG33170 + chr3L 22867142 intron CG33170 + chr3L_8_22865001 chr3L_22865001 RAL-897 1409 chr3L 22894239 22894252 chr3L 22894411 22894424 7 171 11.0 12.0 11.5 0.6 185 chr3L 22894239 intergenic slif + chr3L 22894332 intergenic not near genes chr3L 22894424 intergenic not near genes chr3L_7_22890001 chr3L_22890001 RAL-897 1410 chr3L 19220633 19220636 chr3L 22908066 22908066 13 3687432 31.0 37.5 34.2 0.4 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_13_21060001 chr3L_21060001 RAL-897 1411 chr3L 20525228 20525229 chr3L 22908066 22908066 4 2382838 17.0 37.5 27.2 0.1 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_4_21715001 chr3L_21715001 RAL-897 1412 chr3L 19220633 19220637 chr3L 22908067 22908067 11 3687432 30.5 38.0 34.2 0.3 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_11_21060001 chr3L_21060001 RAL-897 1413 chr3L 22909019 22909054 chr3L 22909110 22909145 20 90 6.5 4.5 5.5 3.1 126 chr3L 22909019 intergenic CR45661 + chr3L 22909082 intergenic CR45661 + chr3L 22909145 intergenic CR45661 + chr3L_20_22905001 chr3L_22905001 RAL-897 1414 chr3L 22974620 22974653 chr3L 22974791 22974824 7 171 2.5 4.0 3.2 1.7 204 chr3L 22974620 intergenic not near genes chr3L 22974722 intergenic not near genes chr3L 22974824 intergenic not near genes chr3L_7_22970001 chr3L_22970001 RAL-897 1415 chr3L 22980577 22980595 chr3L 22980662 22980678 5 81 4.0 4.0 4.0 1.0 101 chr3L 22980577 intergenic not near genes chr3L 22980628 intergenic not near genes chr3L 22980678 intergenic not near genes chr3L_5_22980001 chr3L_22980001 RAL-897 1416 chr3L 22989861 22989890 chr3L 22996834 22996853 297 9 6971 4.5 2.0 3.2 2.1 6992 chr3L 22989861 intergenic not near genes chr3L 22993357 intergenic not near genes chr3L 22996853 intergenic not near genes chr3L_9_22990001 chr3L_22990001 RAL-897 1417 chr3L 23008208 23008233 chr3L 23008283 23008309 11 76 2.0 5.0 3.5 2.4 101 chr3L 23008208 intron nrm + chr3L 23008258 intron nrm + chr3L 23008309 intron nrm + chr3L_11_23005001 chr3L_23005001 RAL-897 1418 chr3L 23042225 23042259 chr3L 23048978 23048999 gypsy6 11 6750 3.0 5.0 4.0 2.2 6774 chr3L 23042225 intergenic not near genes chr3L 23045612 intergenic not near genes chr3L 23048999 intergenic not near genes chr3L_11_23045001 chr3L_23045001 RAL-897 1419 chr3L 23062895 23062899 chr3L 25074005 25074009 Tirant 4 2011110 8.5 8.5 8.5 0.4 2011114 chr3L 23062895 intergenic not near genes chr3L 24068452 intergenic not near genes chr3L 25074009 intergenic not near genes chr3L_4_24065001 chr3L_24065001 RAL-897 1420 chr3L 23088288 23088309 chr3L 23088370 23088391 11 82 3.0 1.0 2.0 3.7 103 chr3L 23088288 intergenic not near genes chr3L 23088340 intergenic not near genes chr3L 23088391 intergenic not near genes chr3L_11_23085001 chr3L_23085001 RAL-897 1421 chr3L 23182816 23182853 chr3L 23182892 23182929 15 75 2.0 3.0 2.5 4.3 113 chr3L 23182816 intron CG34031 + chr3L 23182872 intron CG34031 + chr3L 23182929 intron CG34031 + chr3L_15_23180001 chr3L_23180001 RAL-897 1422 chr3L 23205448 23205452 chr3L 23205678 23205682 4 230 8.0 2.5 5.2 0.6 234 chr3L 23205448 intergenic not near genes chr3L 23205565 intergenic not near genes chr3L 23205682 intergenic not near genes chr3L_4_23205001 chr3L_23205001 RAL-897 1423 chr3L 23250080 23250109 chr3L 23250186 23250213 12 104 0.0 6.5 3.2 2.9 133 chr3L 23250080 intron nAChRalpha4 + chr3L 23250146 intron nAChRalpha4 + chr3L 23250213 intron nAChRalpha4 + chr3L_12_23250001 chr3L_23250001 RAL-897 1424 chr3L 23932487 23932519 chr3L 23932623 23932656 12 137 4.5 2.5 3.5 2.7 169 chr3L 23932487 intron CG40470 - chr3L 23932572 intron CG40470 - chr3L 23932656 intron CG40470 - chr3L_12_23930001 chr3L_23930001 RAL-897 1425 chr3L 23973988 23974010 chr3L 23974462 23974485 Dm88 7 475 1.5 6.0 3.8 1.5 497 chr3L 23973988 intron CG40470 - chr3L 23974236 intron CG40470 - chr3L 23974485 intron CG40470 - chr3L_7_23970001 chr3L_23970001 RAL-897 1426 chr3L 23974516 23974534 chr3L 23979445 23979463 Cr1a 4 4929 17.0 18.5 17.8 0.2 4947 chr3L 23974516 intron CG40470 - chr3L 23976990 intron CG40470 - chr3L 23979463 intron CG40470 - chr3L_4_23975001 chr3L_23975001 RAL-897 1427 chr3L 24021284 24021309 chr3L 24022434 24022466 1360 9 1153 3.0 3.0 3.0 2.2 1182 chr3L 24021284 intergenic not near genes chr3L 24021875 intergenic not near genes chr3L 24022466 intergenic not near genes chr3L_9_24020001 chr3L_24020001 RAL-897 1428 chr3L 24168813 24168822 chr3L 24176116 24176135 ZAM 7 7315 3.5 6.5 5.0 1.2 7322 chr3L 24168813 intron Snap25 + chr3L 24172474 intron Snap25 + chr3L 24176135 intron Snap25 + chr3L_7_24170001 chr3L_24170001 RAL-897 1429 chr3L 18198930 18198931 chr3L 24821492 24821493 4 6622562 13.5 20.5 17.0 0.2 6622563 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-897 1430 chr3L 25354052 25354059 chr3L 25354234 25354241 6 182 3.0 5.0 4.0 1.2 189 chr3L 25354052 intergenic not near genes chr3L 25354146 intergenic not near genes chr3L 25354241 intergenic not near genes chr3L_6_25350001 chr3L_25350001 RAL-897 1431 chr3L 25354060 25354076 chr3L 25354227 25354256 8 179 0.5 4.5 2.5 2.3 196 chr3L 25354060 intergenic not near genes chr3L 25354158 intergenic not near genes chr3L 25354256 intergenic not near genes chr3L_8_25350001 chr3L_25350001 RAL-897 1432 chr3L 25987004 25987012 chr3L 25987406 25987414 4 402 0.0 6.0 3.0 1.0 410 chr3L 25987004 intron CG40178 - chr3L 25987209 intron CG40178 - chr3L 25987414 intron CG40178 - chr3L_4_25985001 chr3L_25985001 RAL-897 1433 chr3L 27390698 27390711 chr3L 27390767 27390790 4 76 31.5 30.0 30.8 0.1 92 chr3L 27390698 intron Dbp80 + chr3L 27390744 intron Dbp80 + chr3L 27390790 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-897 1434 chr3R 2998471 2998493 chr3R 2998547 2998569 7 76 3.0 2.5 2.8 1.8 98 chr3R 2998471 intron CG42618 - chr3R 2998520 intron CG42618 - chr3R 2998569 intron CG42618 - chr3R_7_2995001 chr3R_2995001 RAL-897 1435 chr3R 4105046 4105069 chr3R 4110250 4110273 copia 4 5204 3.0 3.5 3.2 1.0 5227 chr3R 4105046 intergenic not near genes chr3R 4107660 intergenic not near genes chr3R 4110273 intergenic not near genes chr3R_4_4105001 chr3R_4105001 RAL-897 1436 chr3R 4206073 4206104 chr3R 4211648 4211679 mdg3 8 5574 2.5 2.0 2.2 2.5 5606 chr3R 4206073 intron CG14636 - chr3R 4208876 intron CG14636 - chr3R 4211679 intron CG14636 - chr3R_8_4205001 chr3R_4205001 RAL-897 1437 chr3R 4366772 4366784 chr3R 4375138 4375167 roo 4 8379 0.5 2.0 1.2 1.8 8395 chr3R 4366772 3` UTR CG1090 + chr3R 4370970 intergenic not near genes chr3R 4375167 5` UTR CR44922 + chr3R_4_4370001 chr3R_4370001 RAL-897 1438 chr3R 4408413 4408434 chr3R 4412717 4412738 Juan 10 4301 3.5 4.0 3.8 2.1 4325 chr3R 4408413 intron CG32944 - chr3R 4410576 intron CG32944 - chr3R 4412738 intron CG32944 - chr3R_10_4410001 chr3R_4410001 RAL-897 1439 chr3R 4609564 4609578 chr3R 4610710 4610742 1360 10 1162 9.5 4.5 7.0 1.2 1178 chr3R 4609564 intergenic not near genes chr3R 4610153 intergenic not near genes chr3R 4610742 intergenic not near genes chr3R_10_4610001 chr3R_4610001 RAL-897 1440 chr3R 4680710 4680740 chr3R 4680789 4680804 13 78 2.0 5.5 3.8 2.7 94 chr3R 4680710 intron CG43427 + chr3R 4680757 intron CG43427 + chr3R 4680804 5` UTR CG43427 + chr3R_13_4680001 chr3R_4680001 RAL-897 1441 chr3R 4753240 4753272 chr3R 4757543 4757575 F-element 11 4302 7.5 4.0 5.8 1.6 4335 chr3R 4753240 intron,intron atms +,CG44098 - chr3R 4755408 intron,intron atms +,CG44098 - chr3R 4757575 intron,exon atms +,CG44098 - chr3R_11_4755001 chr3R_4755001 RAL-897 1442 chr3R 4769160 4769191 chr3R 4769237 4769269 16 77 5.0 3.0 4.0 3.2 109 chr3R 4769160 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_16_4765001 chr3R_4765001 RAL-897 1443 chr3R 4796112 4796148 chr3R 4796235 4796271 14 119 5.0 7.0 6.0 2.0 159 chr3R 4796112 intron ctrip - chr3R 4796192 intron ctrip - chr3R 4796271 intron ctrip - chr3R_14_4795001 chr3R_4795001 RAL-897 1444 chr3R 4861568 4861587 chr3R 4861648 4861665 11 79 4.5 4.0 4.2 2.1 97 chr3R 4861568 intron opa + chr3R 4861616 intron opa + chr3R 4861665 intron opa + chr3R_11_4860001 chr3R_4860001 RAL-897 1445 chr3R 4861588 4861597 chr3R 4861647 4861665 6 71 1.0 4.0 2.5 1.7 77 chr3R 4861588 intron opa + chr3R 4861626 intron opa + chr3R 4861665 intron opa + chr3R_6_4860001 chr3R_4860001 RAL-897 1446 chr3R 4887484 4887504 chr3R 4894861 4894879 rover 6 7376 7.0 7.0 7.0 0.8 7395 chr3R 4887484 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894879 intergenic not near genes chr3R_6_4890001 chr3R_4890001 RAL-897 1447 chr3R 4922342 4922363 chr3R 4922421 4922442 11 78 5.0 5.5 5.2 1.8 100 chr3R 4922342 intron Cdep + chr3R 4922392 intron Cdep + chr3R 4922442 intron Cdep + chr3R_11_4920001 chr3R_4920001 RAL-897 1448 chr3R 4943615 4943616 chr3R 4943717 4943721 4 104 7.5 4.0 5.8 0.6 106 chr3R 4943615 intron Cdep + chr3R 4943668 intron Cdep + chr3R 4943721 intron Cdep + chr3R_4_4940001 chr3R_4940001 RAL-897 1449 chr3R 4948380 4948390 chr3R 4949002 4949012 5 622 14.5 11.0 12.8 0.4 632 chr3R 4948380 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948696 intergenic UbcD6 - chr3R 4949012 3` UTR UbcD6 - chr3R_5_4945001 chr3R_4945001 RAL-897 1450 chr3R 4979986 4980000 chr3R 4980068 4980080 8 82 6.5 7.0 6.8 1.0 94 chr3R 4979986 intergenic not near genes chr3R 4980033 intergenic not near genes chr3R 4980080 intergenic not near genes chr3R_8_4980001 chr3R_4980001 RAL-897 1451 chr3R 4980001 4980013 chr3R 4980065 4980096 8 80 4.0 6.5 5.2 1.3 95 chr3R 4980001 intergenic not near genes chr3R 4980048 intergenic not near genes chr3R 4980096 intergenic not near genes chr3R_8_4980001 chr3R_4980001 RAL-897 1452 chr3R 5029587 5029595 chr3R 5029978 5029986 4 390 4.5 4.0 4.2 0.8 399 chr3R 5029587 intergenic not near genes chr3R 5029786 intergenic not near genes chr3R 5029986 intergenic not near genes chr3R_4_5025001 chr3R_5025001 RAL-897 1453 chr3R 5067979 5068011 chr3R 5073496 5073512 mdg3 13 5515 4.0 2.0 3.0 3.2 5533 chr3R 5067979 intergenic not near genes chr3R 5070746 intergenic not near genes chr3R 5073512 intergenic not near genes chr3R_13_5070001 chr3R_5070001 RAL-897 1454 chr3R 5162938 5162969 chr3R 5163090 5163116 6 151 1.0 3.0 2.0 2.0 178 chr3R 5162938 intron dpr16 + chr3R 5163027 intron dpr16 + chr3R 5163116 intron dpr16 + chr3R_6_5160001 chr3R_5160001 RAL-897 1455 chr3R 5278088 5278117 chr3R 5278169 5278198 9 80 7.0 5.5 6.2 1.2 110 chr3R 5278088 intron mtd - chr3R 5278143 intron mtd - chr3R 5278198 intron mtd - chr3R_9_5275001 chr3R_5275001 RAL-897 1456 chr3R 5385975 5386004 chr3R 5386142 5386170 19 170 3.0 4.5 3.8 4.0 195 chr3R 5385975 intron kkv - chr3R 5386072 intron kkv - chr3R 5386170 intron kkv - chr3R_19_5385001 chr3R_5385001 RAL-897 1457 chr3R 5445974 5445982 chr3R 5452434 5452442 Burdock 5 6460 3.5 5.5 4.5 0.9 6468 chr3R 5445974 intron CG14669 + chr3R 5449208 intron CG14669 + chr3R 5452442 intron CG14669 + chr3R_5_5445001 chr3R_5445001 RAL-897 1458 chr3R 5445985 5445994 chr3R 5452424 5452453 Burdock 6 6456 1.5 4.5 3.0 1.5 6468 chr3R 5445985 intron CG14669 + chr3R 5449219 intron CG14669 + chr3R 5452453 intron CG14669 + chr3R_6_5445001 chr3R_5445001 RAL-897 1459 chr3R 5627152 5627160 chr3R 5627562 5627571 4 411 5.5 7.0 6.2 0.6 419 chr3R 5627152 intergenic not near genes chr3R 5627362 intergenic CG31551 + chr3R 5627571 intergenic CG31551 + chr3R_4_5625001 chr3R_5625001 RAL-897 1460 chr3R 5726107 5726124 chr3R 5726269 5726286 5 162 0.5 1.5 1.0 2.5 179 chr3R 5726107 intergenic not near genes chr3R 5726196 intergenic not near genes chr3R 5726286 intergenic not near genes chr3R_5_5725001 chr3R_5725001 RAL-897 1461 chr3R 5746013 5746046 chr3R 5746254 5746287 pogo 12 239 2.0 7.0 4.5 2.2 274 chr3R 5746013 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_12_5745001 chr3R_5745001 RAL-897 1462 chr3R 5747012 5747041 chr3R 5753203 5753232 diver 7 6191 1.0 4.5 2.8 1.8 6220 chr3R 5747012 intergenic Madm + chr3R 5750122 intergenic not near genes chr3R 5753232 intergenic CG2091 - chr3R_7_5750001 chr3R_5750001 RAL-897 1463 chr3R 5772376 5772408 chr3R 5772534 5772566 6 156 2.0 2.5 2.2 1.9 190 chr3R 5772376 intron CG2082 - chr3R 5772471 intron CG2082 - chr3R 5772566 intron CG2082 - chr3R_6_5770001 chr3R_5770001 RAL-897 1464 chr3R 5809120 5809145 chr3R 5809361 5809385 pogo 13 240 5.5 5.0 5.2 2.1 265 chr3R 5809120 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809385 3` UTR CG11000 + chr3R_13_5805001 chr3R_5805001 RAL-897 1465 chr3R 5822381 5822389 chr3R 5823548 5823555 1360 6 1167 4.0 5.0 4.5 1.1 1174 chr3R 5822381 3` UTR CG2023 - chr3R 5822968 3` UTR CG2023 - chr3R 5823555 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-897 1466 chr3R 5822394 5822412 chr3R 5823561 5823579 1360 8 1167 2.0 7.5 4.8 1.4 1185 chr3R 5822394 3` UTR CG2023 - chr3R 5822986 3` UTR CG2023 - chr3R 5823579 3` UTR CG2023 - chr3R_8_5820001 chr3R_5820001 RAL-897 1467 chr3R 5896970 5896975 chr3R 5897325 5897334 4 358 7.5 6.0 6.8 0.5 364 chr3R 5896970 intron CG34113 - chr3R 5897152 intron CG34113 - chr3R 5897334 intron CG34113 - chr3R_4_5895001 chr3R_5895001 RAL-897 1468 chr3R 5896976 5897000 chr3R 5897323 5897351 4 352 3.0 5.5 4.2 0.8 375 chr3R 5896976 intron CG34113 - chr3R 5897164 intron CG34113 - chr3R 5897351 intron CG34113 - chr3R_4_5895001 chr3R_5895001 RAL-897 1469 chr3R 5927564 5927590 chr3R 5927804 5927830 pogo 10 239 6.5 3.5 5.0 1.7 266 chr3R 5927564 intron CG34113 - chr3R 5927697 intron CG34113 - chr3R 5927830 intron CG34113 - chr3R_10_5925001 chr3R_5925001 RAL-897 1470 chr3R 5931858 5931871 chr3R 5931933 5931946 4 76 11.0 6.0 8.5 0.4 88 chr3R 5931858 intron CG34113 - chr3R 5931902 intron CG34113 - chr3R 5931946 intron CG34113 - chr3R_4_5930001 chr3R_5930001 RAL-897 1471 chr3R 5931874 5931883 chr3R 5931924 5931959 6 68 9.0 5.5 7.2 0.7 85 chr3R 5931874 intron CG34113 - chr3R 5931916 intron CG34113 - chr3R 5931959 intron CG34113 - chr3R_6_5930001 chr3R_5930001 RAL-897 1472 chr3R 6015970 6015994 chr3R 6024443 6024475 Tirant 9 8477 3.5 4.5 4.0 1.8 8505 chr3R 6015970 intergenic not near genes chr3R 6020222 intergenic not near genes chr3R 6024475 intergenic not near genes chr3R_9_6020001 chr3R_6020001 RAL-897 1473 chr3R 6043426 6043435 chr3R 6043508 6043517 5 81 6.0 3.0 4.5 0.9 91 chr3R 6043426 intergenic not near genes chr3R 6043472 intergenic not near genes chr3R 6043517 intergenic not near genes chr3R_5_6040001 chr3R_6040001 RAL-897 1474 chr3R 6158509 6158535 chr3R 6167092 6167118 Tirant 12 8582 9.0 5.5 7.2 1.5 8609 chr3R 6158509 intergenic not near genes chr3R 6162814 intergenic not near genes chr3R 6167118 intergenic CG1077 + chr3R_12_6160001 chr3R_6160001 RAL-897 1475 chr3R 6175178 6175207 chr3R 6182450 6182467 HMS-Beagle2 15 7268 5.5 5.5 5.5 2.3 7289 chr3R 6175178 intergenic Osi1 + chr3R 6178822 intron CR45194 + chr3R 6182467 intergenic CR45194 + chr3R_15_6175001 chr3R_6175001 RAL-897 1476 chr3R 6206281 6206320 chr3R 6206498 6206537 BS 11 213 4.0 6.5 5.2 1.8 256 chr3R 6206281 exon Osi24 + chr3R 6206409 intron Osi24 + chr3R 6206537 intron Osi24 + chr3R_11_6205001 chr3R_6205001 RAL-897 1477 chr3R 6339446 6339473 chr3R 6339551 6339578 4 104 3.0 3.0 3.0 1.0 132 chr3R 6339446 intergenic not near genes chr3R 6339512 intergenic not near genes chr3R 6339578 intergenic not near genes chr3R_4_6335001 chr3R_6335001 RAL-897 1478 chr3R 6407999 6408032 chr3R 6408130 6408163 15 131 4.5 3.0 3.8 3.1 164 chr3R 6407999 intron gpp + chr3R 6408081 intron gpp + chr3R 6408163 intron gpp + chr3R_15_6405001 chr3R_6405001 RAL-897 1479 chr3R 6484061 6484083 chr3R 6484154 6484175 4 93 3.5 0.5 2.0 1.3 114 chr3R 6484061 intron CG15186 + chr3R 6484118 intron CG15186 + chr3R 6484175 intron CG15186 + chr3R_4_6480001 chr3R_6480001 RAL-897 1480 chr3R 6550331 6550349 chr3R 6550411 6550430 9 78 4.0 4.0 4.0 1.8 99 chr3R 6550331 intron dpr11 - chr3R 6550380 intron dpr11 - chr3R 6550430 intron dpr11 - chr3R_9_6550001 chr3R_6550001 RAL-897 1481 chr3R 6582555 6582585 chr3R 6582632 6582645 20 74 3.0 4.0 3.5 4.4 90 chr3R 6582555 intron dpr11 - chr3R 6582600 intron dpr11 - chr3R 6582645 intron dpr11 - chr3R_20_6580001 chr3R_6580001 RAL-897 1482 chr3R 6606595 6606629 chr3R 6606677 6606705 14 73 4.5 3.5 4.0 2.8 110 chr3R 6606595 3` UTR glob2 - chr3R 6606650 3` UTR glob2 - chr3R 6606705 3` UTR glob2 - chr3R_14_6605001 chr3R_6605001 RAL-897 1483 chr3R 6689344 6689370 chr3R 6689425 6689452 11 80 5.5 1.0 3.2 2.6 108 chr3R 6689344 intergenic Ccp84Af - chr3R 6689398 intergenic Ccp84Af - chr3R 6689452 intergenic Ccp84Af - chr3R_11_6685001 chr3R_6685001 RAL-897 1484 chr3R 6705687 6705722 chr3R 6705911 6705946 6 224 2.5 2.0 2.2 1.9 259 chr3R 6705687 intergenic not near genes chr3R 6705816 intergenic not near genes chr3R 6705946 intergenic not near genes chr3R_6_6705001 chr3R_6705001 RAL-897 1485 chr3R 6737502 6737529 chr3R 6739288 6739316 Doc 14 1786 5.5 2.5 4.0 2.8 1814 chr3R 6737502 intron pb - chr3R 6738409 intron pb - chr3R 6739316 intron pb - chr3R_14_6735001 chr3R_6735001 RAL-897 1486 chr3R 6828026 6828037 chr3R 6828102 6828113 5 76 4.0 2.0 3.0 1.2 87 chr3R 6828026 intron Scr - chr3R 6828070 intron Scr - chr3R 6828113 intron Scr - chr3R_5_6825001 chr3R_6825001 RAL-897 1487 chr3R 6840996 6841022 chr3R 6841098 6841108 5 95 7.5 2.5 5.0 0.8 112 chr3R 6840996 intron Scr - chr3R 6841052 intron Scr - chr3R 6841108 intron Scr - chr3R_5_6840001 chr3R_6840001 RAL-897 1488 chr3R 6891244 6891268 chr3R 6891314 6891343 8 75 2.5 4.0 3.2 1.9 99 chr3R 6891244 intergenic not near genes chr3R 6891294 intergenic not near genes chr3R 6891343 intergenic not near genes chr3R_8_6890001 chr3R_6890001 RAL-897 1489 chr3R 6892662 6892669 chr3R 6892970 6892977 5 308 3.0 2.5 2.8 1.3 315 chr3R 6892662 intergenic CR45559 - chr3R 6892820 intergenic CR45559 - chr3R 6892977 3` UTR CR45559 - chr3R_5_6890001 chr3R_6890001 RAL-897 1490 chr3R 6918063 6918095 chr3R 6918141 6918173 8 78 2.0 2.0 2.0 2.7 110 chr3R 6918063 intron Antp - chr3R 6918118 intron Antp - chr3R 6918173 intron Antp - chr3R_8_6915001 chr3R_6915001 RAL-897 1491 chr3R 7043640 7043655 chr3R 7044171 7044185 5 532 51.5 44.0 47.8 0.1 545 chr3R 7043640 intergenic not near genes chr3R 7043912 intergenic not near genes chr3R 7044185 intergenic not near genes chr3R_5_7040001 chr3R_7040001 RAL-897 1492 chr3R 7043636 7043662 chr3R 7044188 7044195 9 541 53.5 40.0 46.8 0.2 559 chr3R 7043636 intergenic not near genes chr3R 7043916 intergenic not near genes chr3R 7044195 intergenic not near genes chr3R_9_7040001 chr3R_7040001 RAL-897 1493 chr3R 7187739 7187753 chr3R 7187827 7187840 6 87 3.0 4.5 3.8 1.2 101 chr3R 7187739 intron lap + chr3R 7187790 intron lap + chr3R 7187840 intron lap + chr3R_6_7185001 chr3R_7185001 RAL-897 1494 chr3R 7278065 7278095 chr3R 7278192 7278221 11 125 4.5 7.0 5.8 1.6 156 chr3R 7278065 intron rn - chr3R 7278143 intron rn - chr3R 7278221 intron rn - chr3R_11_7275001 chr3R_7275001 RAL-897 1495 chr3R 7281066 7281080 chr3R 7281155 7281172 5 91 2.0 6.5 4.2 1.0 106 chr3R 7281066 intron rn - chr3R 7281119 intron rn - chr3R 7281172 intron rn - chr3R_5_7280001 chr3R_7280001 RAL-897 1496 chr3R 7387001 7387015 chr3R 7387103 7387117 9 102 6.0 5.0 5.5 1.4 116 chr3R 7387001 intergenic CR45560 + chr3R 7387059 intergenic CR45560 + chr3R 7387117 intergenic CR45560 + chr3R_9_7385001 chr3R_7385001 RAL-897 1497 chr3R 7396377 7396386 chr3R 7396477 7396488 4 102 1.5 3.5 2.5 1.1 111 chr3R 7396377 intergenic not near genes chr3R 7396432 intergenic not near genes chr3R 7396488 intergenic not near genes chr3R_4_7395001 chr3R_7395001 RAL-897 1498 chr3R 7404947 7404964 chr3R 7405023 7405040 5 76 0.0 0.5 0.2 4.2 93 chr3R 7404947 intergenic not near genes chr3R 7404994 intergenic not near genes chr3R 7405040 intergenic not near genes chr3R_5_7400001 chr3R_7400001 RAL-897 1499 chr3R 7423125 7423154 chr3R 7423201 7423208 10 74 3.0 3.0 3.0 2.5 83 chr3R 7423125 intergenic wa-cup + chr3R 7423166 intergenic wa-cup + chr3R 7423208 intergenic wa-cup + chr3R_10_7420001 chr3R_7420001 RAL-897 1500 chr3R 7428722 7428750 chr3R 7428898 7428926 7 176 1.5 3.5 2.5 2.0 204 chr3R 7428722 intergenic not near genes chr3R 7428824 intergenic not near genes chr3R 7428926 intergenic not near genes chr3R_7_7425001 chr3R_7425001 RAL-897 1501 chr3R 7481830 7481865 chr3R 7481907 7481925 10 71 2.5 2.0 2.2 3.1 95 chr3R 7481830 intergenic not near genes chr3R 7481878 intergenic not near genes chr3R 7481925 intergenic not near genes chr3R_10_7480001 chr3R_7480001 RAL-897 1502 chr3R 7498855 7498884 chr3R 7498935 7498942 4 74 2.5 2.0 2.2 1.2 87 chr3R 7498855 intron alpha-Est9 - chr3R 7498898 intron alpha-Est9 - chr3R 7498942 intron alpha-Est9 - chr3R_4_7495001 chr3R_7495001 RAL-897 1503 chr3R 7514101 7514115 chr3R 7514266 7514289 4 171 4.0 3.5 3.8 0.8 188 chr3R 7514101 intron alpha-Est8 - chr3R 7514195 intron alpha-Est8 - chr3R 7514289 intron alpha-Est8 - chr3R_4_7510001 chr3R_7510001 RAL-897 1504 chr3R 7581902 7581920 chr3R 7582003 7582021 4 101 2.5 3.0 2.8 1.1 119 chr3R 7581902 intron CG34127 - chr3R 7581962 intron CG34127 - chr3R 7582021 intron CG34127 - chr3R_4_7580001 chr3R_7580001 RAL-897 1505 chr3R 7617998 7618017 chr3R 7618090 7618107 7 92 4.5 6.0 5.2 1.1 109 chr3R 7617998 intron CG34127 - chr3R 7618052 intron CG34127 - chr3R 7618107 intron CG34127 - chr3R_7_7615001 chr3R_7615001 RAL-897 1506 chr3R 7677914 7677945 chr3R 7678027 7678056 10 109 1.5 5.0 3.2 2.4 142 chr3R 7677914 intron Nlg1 + chr3R 7677985 intron Nlg1 + chr3R 7678056 intron Nlg1 + chr3R_10_7675001 chr3R_7675001 RAL-897 1507 chr3R 7694579 7694592 chr3R 7713638 7713653 invader3 4 19059 2.5 2.0 2.2 1.2 19074 chr3R 7694579 3` UTR Nlg1 + chr3R 7704116 intergenic not near genes chr3R 7713653 intergenic not near genes chr3R_4_7700001 chr3R_7700001 RAL-897 1508 chr3R 7729469 7729498 chr3R 7737406 7737436 Stalker2 7 7937 4.0 6.5 5.2 1.1 7967 chr3R 7729469 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737436 intergenic not near genes chr3R_7_7730001 chr3R_7730001 RAL-897 1509 chr3R 7793349 7793370 chr3R 7793425 7793449 8 78 4.0 0.5 2.2 2.5 100 chr3R 7793349 3` UTR CG10086 + chr3R 7793399 3` UTR CG10086 + chr3R 7793449 3` UTR CG10086 + chr3R_8_7790001 chr3R_7790001 RAL-897 1510 chr3R 7830309 7830313 chr3R 7830453 7830454 5 146 5.5 5.0 5.2 0.8 145 chr3R 7830309 intron CG34384 + chr3R 7830382 intron CG34384 + chr3R 7830454 intron CG34384 + chr3R_5_7830001 chr3R_7830001 RAL-897 1511 chr3R 7830316 7830329 chr3R 7830450 7830480 8 146 3.5 4.5 4.0 1.6 164 chr3R 7830316 intron CG34384 + chr3R 7830398 intron CG34384 + chr3R 7830480 intron CG34384 + chr3R_8_7830001 chr3R_7830001 RAL-897 1512 chr3R 7857641 7857669 chr3R 7857724 7857752 11 81 2.5 1.5 2.0 3.7 111 chr3R 7857641 3` UTR CG17816 - chr3R 7857696 3` UTR CG17816 - chr3R 7857752 3` UTR CG17816 - chr3R_11_7855001 chr3R_7855001 RAL-897 1513 chr3R 7883125 7883160 chr3R 7883203 7883238 10 76 3.5 5.5 4.5 1.8 113 chr3R 7883125 intron CG17816 - chr3R 7883182 intron CG17816 - chr3R 7883238 intron CG17816 - chr3R_10_7880001 chr3R_7880001 RAL-897 1514 chr3R 8033036 8033065 chr3R 8033122 8033154 15 89 3.0 3.5 3.2 3.6 118 chr3R 8033036 intergenic CG11035 -,unc-45 + chr3R 8033095 intergenic CG11035 -,unc-45 + chr3R 8033154 intergenic CG11035 -,unc-45 + chr3R_15_8030001 chr3R_8030001 RAL-897 1515 chr3R 8090272 8090290 chr3R 8090449 8090467 10 177 7.5 3.0 5.2 1.6 195 chr3R 8090272 5` UTR CR44330 + chr3R 8090370 intergenic CR44330 + chr3R 8090467 intergenic CR44330 + chr3R_10_8090001 chr3R_8090001 RAL-897 1516 chr3R 8094408 8094430 chr3R 8099713 8099735 Transpac 10 5304 6.0 4.0 5.0 1.7 5327 chr3R 8094408 intron CG7900 + chr3R 8097072 intron CG7900 + chr3R 8099735 intron CG7900 + chr3R_10_8095001 chr3R_8095001 RAL-897 1517 chr3R 8101766 8101790 chr3R 8104848 8104873 G2 14 3083 4.5 3.5 4.0 2.8 3107 chr3R 8101766 exon CG7900 + chr3R 8103320 intron CG7900 + chr3R 8104873 3` UTR CG7900 + chr3R_14_8100001 chr3R_8100001 RAL-897 1518 chr3R 8207570 8207590 chr3R 8208398 8208422 F-element 8 836 1.0 6.0 3.5 1.8 852 chr3R 8207570 intergenic not near genes chr3R 8207996 intergenic not near genes chr3R 8208422 intergenic not near genes chr3R_8_8205001 chr3R_8205001 RAL-897 1519 chr3R 8213011 8213042 chr3R 8213094 8213115 6 74 3.0 1.5 2.2 1.9 104 chr3R 8213011 intergenic not near genes chr3R 8213063 intergenic not near genes chr3R 8213115 intergenic not near genes chr3R_6_8210001 chr3R_8210001 RAL-897 1520 chr3R 8247900 8247926 chr3R 8247977 8248008 9 80 3.0 1.5 2.2 2.8 108 chr3R 8247900 intron,intron CG18749 +,CG33722 + chr3R 8247954 3` UTR,3` UTR CG18749 +,CG33722 + chr3R 8248008 3` UTR,3` UTR CG18749 +,CG33722 + chr3R_9_8245001 chr3R_8245001 RAL-897 1521 chr3R 8339246 8339247 chr3R 21907534 21907536 10 13568288 24.0 28.5 26.2 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 RAL-897 1522 chr3R 8393584 8393603 chr3R 8393668 8393687 5 83 3.0 9.0 6.0 0.7 103 chr3R 8393584 intron CG45263 - chr3R 8393636 intron CG45263 - chr3R 8393687 intron CG45263 - chr3R_5_8390001 chr3R_8390001 RAL-897 1523 chr3R 8395275 8395306 chr3R 8395388 8395406 17 110 6.5 3.0 4.8 2.9 131 chr3R 8395275 intron CG45263 - chr3R 8395340 intron CG45263 - chr3R 8395406 intron CG45263 - chr3R_17_8395001 chr3R_8395001 RAL-897 1524 chr3R 8403010 8403040 chr3R 8412174 8412206 roo 21 9165 7.5 4.5 6.0 3.0 9196 chr3R 8403010 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_21_8405001 chr3R_8405001 RAL-897 1525 chr3R 8534777 8534813 chr3R 8535034 8535069 11 257 2.0 6.5 4.2 2.1 292 chr3R 8534777 intergenic not near genes chr3R 8534923 intergenic not near genes chr3R 8535069 intergenic not near genes chr3R_11_8530001 chr3R_8530001 RAL-897 1526 chr3R 8570481 8570509 chr3R 8575145 8575159 HMS-Beagle 16 4661 2.5 6.5 4.5 2.9 4678 chr3R 8570481 intergenic not near genes chr3R 8572820 intergenic not near genes chr3R 8575159 intergenic not near genes chr3R_16_8570001 chr3R_8570001 RAL-897 1527 chr3R 8601781 8601799 chr3R 8610920 8610952 roo 6 9150 4.0 7.0 5.5 0.9 9171 chr3R 8601781 intron 5-HT2B + chr3R 8606366 intron 5-HT2B + chr3R 8610952 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-897 1528 chr3R 8621540 8621548 chr3R 8621617 8621625 5 77 11.0 5.5 8.2 0.5 85 chr3R 8621540 intron 5-HT2B + chr3R 8621582 intron 5-HT2B + chr3R 8621625 intron 5-HT2B + chr3R_5_8620001 chr3R_8620001 RAL-897 1529 chr3R 8621552 8621572 chr3R 8621616 8621632 6 69 5.5 5.5 5.5 0.9 80 chr3R 8621552 intron 5-HT2B + chr3R 8621592 intron 5-HT2B + chr3R 8621632 intron 5-HT2B + chr3R_6_8620001 chr3R_8620001 RAL-897 1530 chr3R 8636935 8636965 chr3R 8637235 8637268 13 301 4.0 4.5 4.2 2.5 333 chr3R 8636935 intergenic not near genes chr3R 8637102 intergenic not near genes chr3R 8637268 intergenic not near genes chr3R_13_8635001 chr3R_8635001 RAL-897 1531 chr3R 8685297 8685314 chr3R 8685397 8685414 4 100 3.5 2.5 3.0 1.0 117 chr3R 8685297 intron CR44937 - chr3R 8685356 intron CR44937 - chr3R 8685414 intron CR44937 - chr3R_4_8685001 chr3R_8685001 RAL-897 1532 chr3R 8707356 8707391 chr3R 8709797 8709819 jockey 14 2439 5.5 6.5 6.0 2.0 2463 chr3R 8707356 intergenic not near genes chr3R 8708588 intergenic not near genes chr3R 8709819 intergenic not near genes chr3R_14_8705001 chr3R_8705001 RAL-897 1533 chr3R 8744461 8744494 chr3R 8744547 8744580 14 82 4.0 3.5 3.8 2.9 119 chr3R 8744461 intron CG9801 - chr3R 8744520 intron CG9801 - chr3R 8744580 intron CG9801 - chr3R_14_8740001 chr3R_8740001 RAL-897 1534 chr3R 8894873 8894903 chr3R 8896029 8896059 1360 8 1156 1.0 3.0 2.0 2.7 1186 chr3R 8894873 intron pyd - chr3R 8895466 intron pyd - chr3R 8896059 intron pyd - chr3R_8_8895001 chr3R_8895001 RAL-897 1535 chr3R 8917895 8917912 chr3R 8917975 8917992 7 80 4.0 5.5 4.8 1.2 97 chr3R 8917895 intron pyd - chr3R 8917944 intron pyd - chr3R 8917992 intron pyd - chr3R_7_8915001 chr3R_8915001 RAL-897 1536 chr3R 8923987 8924017 chr3R 8928462 8928493 17 4476 41.0 49.0 45.0 0.4 4506 chr3R 8923987 intron pyd - chr3R 8926240 intron pyd - chr3R 8928493 intron pyd - chr3R_17_8925001 chr3R_8925001 RAL-897 1537 chr3R 9036373 9036403 chr3R 9036451 9036481 4 78 5.5 1.5 3.5 0.9 108 chr3R 9036373 intron neur - chr3R 9036427 intron neur - chr3R 9036481 intron neur - chr3R_4_9035001 chr3R_9035001 RAL-897 1538 chr3R 9066190 9066217 chr3R 9066266 9066278 11 74 4.5 1.5 3.0 2.8 88 chr3R 9066190 exon Ada + chr3R 9066234 exon Ada + chr3R 9066278 3` UTR Ada + chr3R_11_9065001 chr3R_9065001 RAL-897 1539 chr3R 9108867 9108880 chr3R 9108943 9108956 4 76 5.0 5.0 5.0 0.7 89 chr3R 9108867 intron pum - chr3R 9108912 intron pum - chr3R 9108956 intron pum - chr3R_4_9105001 chr3R_9105001 RAL-897 1540 chr3R 9171920 9171950 chr3R 9172285 9172315 9 364 2.0 4.0 3.0 2.2 395 chr3R 9171920 intron pum - chr3R 9172118 intron pum - chr3R 9172315 intron pum - chr3R_9_9170001 chr3R_9170001 RAL-897 1541 chr3R 9204258 9204275 chr3R 9204338 9204362 6 84 7.5 6.0 6.8 0.8 104 chr3R 9204258 intron pum - chr3R 9204310 intron pum - chr3R 9204362 intron pum - chr3R_6_9200001 chr3R_9200001 RAL-897 1542 chr3R 9278781 9278812 chr3R 9284041 9284055 Rt1a 14 5257 8.5 8.0 8.2 1.5 5274 chr3R 9278781 intergenic not near genes chr3R 9281418 intergenic not near genes chr3R 9284055 intergenic not near genes chr3R_14_9280001 chr3R_9280001 RAL-897 1543 chr3R 9318546 9318563 chr3R 9318634 9318652 12 87 4.5 8.0 6.2 1.7 106 chr3R 9318546 intron CG8861 - chr3R 9318599 intron CG8861 - chr3R 9318652 intron CG8861 - chr3R_12_9315001 chr3R_9315001 RAL-897 1544 chr3R 9319574 9319607 chr3R 9320009 9320042 jockey 15 434 6.5 3.0 4.8 2.6 468 chr3R 9319574 intron CG8861 - chr3R 9319808 intron CG8861 - chr3R 9320042 intron CG8861 - chr3R_15_9315001 chr3R_9315001 RAL-897 1545 chr3R 9327424 9327440 chr3R 9334272 9334303 16 6849 3.0 39.5 21.2 0.7 6879 chr3R 9327424 intron CG8861 - chr3R 9330864 intergenic CG16749 - chr3R 9334303 exon CG8866 - chr3R_16_9330001 chr3R_9330001 RAL-897 1546 chr3R 9347844 9347881 chr3R 9347927 9347964 14 82 3.5 5.0 4.2 2.7 120 chr3R 9347844 intron CG45050 + chr3R 9347904 intron CG45050 + chr3R 9347964 intron CG45050 + chr3R_14_9345001 chr3R_9345001 RAL-897 1547 chr3R 9379155 9379177 chr3R 9379227 9379259 5 80 0.0 3.0 1.5 2.0 104 chr3R 9379155 intron FER - chr3R 9379207 intron FER - chr3R 9379259 intron FER - chr3R_5_9375001 chr3R_9375001 RAL-897 1548 chr3R 9382821 9382846 chr3R 9382941 9382971 16 123 2.0 3.5 2.8 4.2 150 chr3R 9382821 intron FER - chr3R 9382896 intron FER - chr3R 9382971 intron FER - chr3R_16_9380001 chr3R_9380001 RAL-897 1549 chr3R 9422381 9422414 chr3R 9422475 9422480 20 92 3.0 7.0 5.0 3.3 99 chr3R 9422381 intron ps + chr3R 9422430 intron ps + chr3R 9422480 intron ps + chr3R_20_9420001 chr3R_9420001 RAL-897 1550 chr3R 9440330 9440365 chr3R 9440416 9440443 18 79 7.0 8.0 7.5 2.1 113 chr3R 9440330 intron ps + chr3R 9440386 intron ps + chr3R 9440443 intron ps + chr3R_18_9440001 chr3R_9440001 RAL-897 1551 chr3R 9644585 9644610 chr3R 9644666 9644686 7 77 0.5 4.5 2.5 2.0 101 chr3R 9644585 intron Dh44 + chr3R 9644636 intron Dh44 + chr3R 9644686 intron Dh44 + chr3R_7_9640001 chr3R_9640001 RAL-897 1552 chr3R 9781661 9781673 chr3R 9785228 9785260 9 3573 39.5 51.0 45.2 0.2 3599 chr3R 9781661 3` UTR,intron CR31514 -,CG12947 + chr3R 9783460 3` UTR MtnA - chr3R 9785260 intron CG8500 + chr3R_9_9780001 chr3R_9780001 RAL-897 1553 chr3R 9824513 9824518 chr3R 9824758 9824766 5 247 7.5 7.5 7.5 0.6 253 chr3R 9824513 3` UTR CR42858 - chr3R 9824640 3` UTR CR42858 - chr3R 9824766 intron CR42858 - chr3R_5_9820001 chr3R_9820001 RAL-897 1554 chr3R 9824520 9824534 chr3R 9824754 9824782 8 244 5.5 6.0 5.8 1.2 262 chr3R 9824520 3` UTR CR42858 - chr3R 9824651 3` UTR CR42858 - chr3R 9824782 intron CR42858 - chr3R_8_9820001 chr3R_9820001 RAL-897 1555 chr3R 9853175 9853209 chr3R 9853284 9853301 13 107 5.5 4.5 5.0 2.2 126 chr3R 9853175 intron Teh1 - chr3R 9853238 intron Teh1 - chr3R 9853301 intron Teh1 - chr3R_13_9850001 chr3R_9850001 RAL-897 1556 chr3R 9878021 9878027 chr3R 9878108 9878115 4 88 6.5 7.0 6.8 0.5 94 chr3R 9878021 intron,intron Glut4EF +,CR45029 - chr3R 9878068 intron,intron Glut4EF +,CR45029 - chr3R 9878115 intron,intron Glut4EF +,CR45029 - chr3R_4_9875001 chr3R_9875001 RAL-897 1557 chr3R 9881797 9881824 chr3R 9882018 9882037 17 218 5.5 5.0 5.2 2.7 240 chr3R 9881797 intron Glut4EF + chr3R 9881917 intron Glut4EF + chr3R 9882037 intron Glut4EF + chr3R_17_9880001 chr3R_9880001 RAL-897 1558 chr3R 9936873 9936912 chr3R 9936949 9936988 16 75 4.5 2.0 3.2 3.8 115 chr3R 9936873 intron Glut4EF + chr3R 9936930 intron Glut4EF + chr3R 9936988 intron Glut4EF + chr3R_16_9935001 chr3R_9935001 RAL-897 1559 chr3R 10039911 10039938 chr3R 10039993 10040005 15 75 4.0 2.5 3.2 3.6 94 chr3R 10039911 intron Mical - chr3R 10039958 intron Mical - chr3R 10040005 intron Mical - chr3R_15_10035001 chr3R_10035001 RAL-897 1560 chr3R 10073778 10073803 chr3R 10073887 10073912 7 109 4.0 5.5 4.8 1.2 134 chr3R 10073778 intergenic nerfin-2 +,CG5361 - chr3R 10073845 3` UTR CG5361 - chr3R 10073912 exon CG5361 - chr3R_7_10070001 chr3R_10070001 RAL-897 1561 chr3R 10192287 10192296 chr3R 10192473 10192482 5 186 9.5 7.0 8.2 0.5 195 chr3R 10192287 intron Syn + chr3R 10192384 intron Syn + chr3R 10192482 intron Syn + chr3R_5_10190001 chr3R_10190001 RAL-897 1562 chr3R 10231798 10231813 chr3R 10237375 10237375 mdg3 7 5575 0.5 3.5 2.0 2.3 5577 chr3R 10231798 intron CG42795 + chr3R 10234586 intron CG42795 + chr3R 10237375 intron CG42795 + chr3R_7_10230001 chr3R_10230001 RAL-897 1563 chr3R 10563131 10563160 chr3R 10563211 10563228 10 78 2.0 4.0 3.0 2.5 97 chr3R 10563131 intron hth - chr3R 10563180 intron hth - chr3R 10563228 intron hth - chr3R_10_10560001 chr3R_10560001 RAL-897 1564 chr3R 10594151 10594180 chr3R 10594236 10594249 18 82 5.5 2.0 3.8 3.8 98 chr3R 10594151 intron hth - chr3R 10594200 intron hth - chr3R 10594249 intron hth - chr3R_18_10590001 chr3R_10590001 RAL-897 1565 chr3R 10689919 10689933 chr3R 10690156 10690170 6 237 0.0 4.5 2.2 1.9 251 chr3R 10689919 intron Skeletor + chr3R 10690044 intron Skeletor + chr3R 10690170 intron Skeletor + chr3R_6_10690001 chr3R_10690001 RAL-897 1566 chr3R 10727644 10727678 chr3R 10727723 10727755 20 79 3.5 4.0 3.8 4.2 111 chr3R 10727644 intergenic not near genes chr3R 10727700 intergenic not near genes chr3R 10727755 intergenic not near genes chr3R_20_10725001 chr3R_10725001 RAL-897 1567 chr3R 10785811 10785834 chr3R 10785890 10785913 5 79 4.5 1.5 3.0 1.2 102 chr3R 10785811 intron Rbp1 + chr3R 10785862 intron Rbp1 + chr3R 10785913 intron Rbp1 + chr3R_5_10785001 chr3R_10785001 RAL-897 1568 chr3R 10836809 10836841 chr3R 10836886 10836918 21 75 4.5 3.0 3.8 4.4 109 chr3R 10836809 intron Cad86C + chr3R 10836864 intron Cad86C + chr3R 10836918 intron Cad86C + chr3R_21_10835001 chr3R_10835001 RAL-897 1569 chr3R 10920043 10920078 chr3R 10920121 10920156 11 76 2.0 4.5 3.2 2.6 113 chr3R 10920043 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920156 intergenic not near genes chr3R_11_10920001 chr3R_10920001 RAL-897 1570 chr3R 10971481 10971513 chr3R 10971571 10971600 12 89 6.5 2.0 4.2 2.3 119 chr3R 10971481 intergenic not near genes chr3R 10971540 intergenic not near genes chr3R 10971600 intergenic not near genes chr3R_12_10970001 chr3R_10970001 RAL-897 1571 chr3R 11085461 11085486 chr3R 11085538 11085562 7 77 0.0 4.5 2.2 2.2 101 chr3R 11085461 3` UTR CR44940 - chr3R 11085512 intergenic CR44940 - chr3R 11085562 intergenic CR44940 - chr3R_7_11085001 chr3R_11085001 RAL-897 1572 chr3R 11085775 11085806 chr3R 11086070 11086100 12 295 3.0 3.5 3.2 2.9 325 chr3R 11085775 intergenic CR44940 - chr3R 11085938 intergenic CR44940 - chr3R 11086100 intergenic not near genes chr3R_12_11085001 chr3R_11085001 RAL-897 1573 chr3R 11102683 11102713 chr3R 11102771 11102802 25 87 6.5 3.0 4.8 4.3 119 chr3R 11102683 intergenic not near genes chr3R 11102742 intergenic not near genes chr3R 11102802 intergenic not near genes chr3R_25_11100001 chr3R_11100001 RAL-897 1574 chr3R 11174607 11174614 chr3R 11175321 11175328 6 714 26.0 32.5 29.2 0.2 721 chr3R 11174607 exon Ugt86Dj - chr3R 11174968 intron Ugt86Dj - chr3R 11175328 exon Ugt86Dj - chr3R_6_11170001 chr3R_11170001 RAL-897 1575 chr3R 11291742 11291773 chr3R 11291827 11291836 9 81 1.5 3.5 2.5 2.6 94 chr3R 11291742 intron CR31386 - chr3R 11291789 intron CR31386 - chr3R 11291836 intron CR31386 - chr3R_9_11290001 chr3R_11290001 RAL-897 1576 chr3R 11303082 11303114 chr3R 11303162 11303180 14 78 6.5 1.5 4.0 2.8 98 chr3R 11303082 intron CR31386 - chr3R 11303131 intron CR31386 - chr3R 11303180 intron CR31386 - chr3R_14_11300001 chr3R_11300001 RAL-897 1577 chr3R 11325354 11325368 chr3R 11325448 11325449 5 89 2.5 7.5 5.0 0.8 95 chr3R 11325354 intergenic not near genes chr3R 11325402 intergenic not near genes chr3R 11325449 intergenic not near genes chr3R_5_11325001 chr3R_11325001 RAL-897 1578 chr3R 11379234 11379267 chr3R 11388389 11388422 roo 5 9155 4.5 7.0 5.8 0.7 9188 chr3R 11379234 intron pros + chr3R 11383828 intron pros + chr3R 11388422 intron pros + chr3R_5_11380001 chr3R_11380001 RAL-897 1579 chr3R 11664790 11664820 chr3R 11664882 11664904 11 89 2.5 2.5 2.5 3.1 114 chr3R 11664790 intron CG42327 + chr3R 11664847 intron CG42327 + chr3R 11664904 intron CG42327 + chr3R_11_11660001 chr3R_11660001 RAL-897 1580 chr3R 11694727 11694739 chr3R 11694820 11694832 7 93 4.0 5.0 4.5 1.3 105 chr3R 11694727 intergenic Fer3 - chr3R 11694780 intergenic Fer3 - chr3R 11694832 intergenic not near genes chr3R_7_11690001 chr3R_11690001 RAL-897 1581 chr3R 11734163 11734190 chr3R 11734281 11734309 16 118 3.5 8.0 5.8 2.4 146 chr3R 11734163 intergenic not near genes chr3R 11734236 intergenic not near genes chr3R 11734309 intergenic not near genes chr3R_16_11730001 chr3R_11730001 RAL-897 1582 chr3R 11740435 11740468 chr3R 11743542 11743575 32 3108 77.0 58.5 67.8 0.5 3140 chr3R 11740435 exon Blm - chr3R 11742005 5` UTR CG14722 + chr3R 11743575 exon CG14722 + chr3R_32_11740001 chr3R_11740001 RAL-897 1583 chr3R 11763936 11763946 chr3R 11763996 11764025 10 71 5.0 8.5 6.8 1.3 89 chr3R 11763936 5` UTR Lk6 - chr3R 11763980 5` UTR Lk6 - chr3R 11764025 5` UTR Lk6 - chr3R_10_11760001 chr3R_11760001 RAL-897 1584 chr3R 11841077 11841098 chr3R 11846257 11846274 BS 6 5181 3.0 5.0 4.0 1.2 5197 chr3R 11841077 intron CG6959 - chr3R 11843676 intron CG6959 - chr3R 11846274 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-897 1585 chr3R 11853434 11853473 chr3R 11853583 11853620 10 147 4.0 5.0 4.5 1.8 186 chr3R 11853434 intron CG6959 - chr3R 11853527 intron CG6959 - chr3R 11853620 intron CG6959 - chr3R_10_11850001 chr3R_11850001 RAL-897 1586 chr3R 11853768 11853801 chr3R 11853873 11853906 7 104 4.0 4.5 4.2 1.3 138 chr3R 11853768 intron CG6959 - chr3R 11853837 intron CG6959 - chr3R 11853906 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-897 1587 chr3R 11909366 11909375 chr3R 11909440 11909453 4 75 7.0 3.5 5.2 0.6 87 chr3R 11909366 intron Cad87A - chr3R 11909410 intron Cad87A - chr3R 11909453 intron Cad87A - chr3R_4_11905001 chr3R_11905001 RAL-897 1588 chr3R 11909377 11909390 chr3R 11909439 11909470 7 68 4.0 3.5 3.8 1.5 93 chr3R 11909377 intron Cad87A - chr3R 11909424 intron Cad87A - chr3R 11909470 intron Cad87A - chr3R_7_11905001 chr3R_11905001 RAL-897 1589 chr3R 12022887 12022913 chr3R 12025063 12025089 pogo 9 2175 3.5 5.0 4.2 1.7 2202 chr3R 12022887 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025089 intergenic not near genes chr3R_9_12020001 chr3R_12020001 RAL-897 1590 chr3R 12045174 12045200 chr3R 12045250 12045276 11 76 2.0 3.0 2.5 3.1 102 chr3R 12045174 intergenic not near genes chr3R 12045225 intergenic not near genes chr3R 12045276 intergenic not near genes chr3R_11_12045001 chr3R_12045001 RAL-897 1591 chr3R 12081998 12082028 chr3R 12082074 12082104 18 74 3.5 4.5 4.0 3.6 106 chr3R 12081998 intron CG14741 - chr3R 12082051 intron CG14741 - chr3R 12082104 intron CG14741 - chr3R_18_12080001 chr3R_12080001 RAL-897 1592 chr3R 12154030 12154049 chr3R 12154456 12154492 14 436 20.5 29.0 24.8 0.5 462 chr3R 12154030 intron dpr15 - chr3R 12154261 intron dpr15 - chr3R 12154492 intron dpr15 - chr3R_14_12150001 chr3R_12150001 RAL-897 1593 chr3R 12175226 12175262 chr3R 12175306 12175343 4 80 1.5 0.0 0.8 2.2 117 chr3R 12175226 intergenic not near genes chr3R 12175284 intergenic not near genes chr3R 12175343 intergenic not near genes chr3R_4_12175001 chr3R_12175001 RAL-897 1594 chr3R 12183178 12183203 chr3R 12183264 12183288 11 86 6.0 4.5 5.2 1.8 110 chr3R 12183178 intergenic not near genes chr3R 12183233 intergenic not near genes chr3R 12183288 intergenic not near genes chr3R_11_12180001 chr3R_12180001 RAL-897 1595 chr3R 12344130 12344156 chr3R 12344206 12344233 14 75 3.0 3.0 3.0 3.5 103 chr3R 12344130 intergenic not near genes chr3R 12344182 intergenic not near genes chr3R 12344233 intergenic not near genes chr3R_14_12340001 chr3R_12340001 RAL-897 1596 chr3R 12405000 12405016 chr3R 12405217 12405238 6 221 5.5 2.0 3.8 1.2 238 chr3R 12405000 intron Cyp9f2 - chr3R 12405119 intron Cyp9f2 - chr3R 12405238 intron Cyp9f2 - chr3R_6_12405001 chr3R_12405001 RAL-897 1597 chr3R 11912109 11912135 chr3R 12511301 12511327 6 599192 11.5 10.5 11.0 0.5 599218 chr3R 11912109 intron Cad87A - chr3R 12211718 intergenic not near genes chr3R 12511327 3` UTR Hsp70Bc + chr3R_6_12210001 chr3R_12210001 RAL-897 1598 chr3R 12599372 12599381 chr3R 12599455 12599459 7 81 6.0 6.5 6.2 1.0 87 chr3R 12599372 intergenic not near genes chr3R 12599416 intergenic not near genes chr3R 12599459 intergenic not near genes chr3R_7_12595001 chr3R_12595001 RAL-897 1599 chr3R 12599386 12599406 chr3R 12599453 12599488 9 79 1.0 6.5 3.8 1.9 102 chr3R 12599386 intergenic not near genes chr3R 12599437 intergenic not near genes chr3R 12599488 intergenic not near genes chr3R_9_12595001 chr3R_12595001 RAL-897 1600 chr3R 12685406 12685432 chr3R 12685524 12685548 12 117 6.0 5.0 5.5 1.8 142 chr3R 12685406 intron kar - chr3R 12685477 intron kar - chr3R 12685548 intron kar - chr3R_12_12685001 chr3R_12685001 RAL-897 1601 chr3R 12733489 12733507 chr3R 12733551 12733584 4 73 4.0 3.0 3.5 0.9 95 chr3R 12733489 intergenic not near genes chr3R 12733536 intergenic not near genes chr3R 12733584 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-897 1602 chr3R 12763126 12763144 chr3R 12763203 12763221 4 77 0.0 0.0 0.0 4.0 95 chr3R 12763126 intron beat-Vc - chr3R 12763174 intron beat-Vc - chr3R 12763221 intron beat-Vc - chr3R_4_12760001 chr3R_12760001 RAL-897 1603 chr3R 12766081 12766103 chr3R 12766205 12766227 8 124 4.5 3.0 3.8 1.7 146 chr3R 12766081 intron beat-Vc - chr3R 12766154 intron beat-Vc - chr3R 12766227 intron beat-Vc - chr3R_8_12765001 chr3R_12765001 RAL-897 1604 chr3R 12780277 12780302 chr3R 12780390 12780415 BS 4 113 4.5 3.0 3.8 0.8 138 chr3R 12780277 intron beat-Vc - chr3R 12780346 intron beat-Vc - chr3R 12780415 intron beat-Vc - chr3R_4_12780001 chr3R_12780001 RAL-897 1605 chr3R 12786456 12786490 chr3R 12786814 12786845 12 357 3.0 9.0 6.0 1.7 389 chr3R 12786456 intergenic not near genes chr3R 12786650 intergenic not near genes chr3R 12786845 intergenic not near genes chr3R_12_12785001 chr3R_12785001 RAL-897 1606 chr3R 12819034 12819053 chr3R 12819117 12819136 5 83 4.0 2.5 3.2 1.2 102 chr3R 12819034 intergenic not near genes chr3R 12819085 intergenic not near genes chr3R 12819136 intergenic not near genes chr3R_5_12815001 chr3R_12815001 RAL-897 1607 chr3R 12866488 12866519 chr3R 12866639 12866670 10 150 3.0 3.5 3.2 2.4 182 chr3R 12866488 intergenic not near genes chr3R 12866579 intergenic not near genes chr3R 12866670 intergenic not near genes chr3R_10_12865001 chr3R_12865001 RAL-897 1608 chr3R 12920156 12920185 chr3R 12925359 12925388 copia 9 5200 4.0 4.5 4.2 1.7 5232 chr3R 12920156 intron beat-Vb + chr3R 12922772 intron beat-Vb + chr3R 12925388 intron beat-Vb + chr3R_9_12920001 chr3R_12920001 RAL-897 1609 chr3R 13045791 13045802 chr3R 13053027 13053038 6 7236 52.5 47.5 50.0 0.1 7247 chr3R 13045791 exon Hsc70-2 + chr3R 13049414 3` UTR CG7966 - chr3R 13053038 intron pic + chr3R_6_13045001 chr3R_13045001 RAL-897 1610 chr3R 13067103 13067124 chr3R 13067179 13067200 7 76 0.0 2.0 1.0 3.5 97 chr3R 13067103 intron sim + chr3R 13067152 intron sim + chr3R 13067200 intron sim + chr3R_7_13065001 chr3R_13065001 RAL-897 1611 chr3R 13120776 13120793 chr3R 13120851 13120869 7 76 4.5 7.5 6.0 1.0 93 chr3R 13120776 intron timeout + chr3R 13120822 intron timeout + chr3R 13120869 intron timeout + chr3R_7_13120001 chr3R_13120001 RAL-897 1612 chr3R 13135831 13135858 chr3R 13138006 13138033 pogo 12 2175 3.0 6.0 4.5 2.2 2202 chr3R 13135831 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136932 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138033 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_12_13135001 chr3R_13135001 RAL-897 1613 chr3R 13143041 13143060 chr3R 13148617 13148631 mdg3 7 5573 7.0 12.5 9.8 0.6 5590 chr3R 13143041 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145836 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148631 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-897 1614 chr3R 13194095 13194129 chr3R 13194684 13194717 11 589 1.0 4.5 2.8 2.9 622 chr3R 13194095 intergenic not near genes chr3R 13194406 intergenic not near genes chr3R 13194717 intergenic not near genes chr3R_11_13190001 chr3R_13190001 RAL-897 1615 chr3R 13195952 13195984 chr3R 13196047 13196078 18 93 6.5 6.5 6.5 2.4 126 chr3R 13195952 intergenic not near genes chr3R 13196015 intergenic not near genes chr3R 13196078 intergenic not near genes chr3R_18_13195001 chr3R_13195001 RAL-897 1616 chr3R 7773344 7773344 chr3R 13217322 13217322 5 5443978 14.0 16.0 15.0 0.3 5443978 chr3R 7773344 intergenic not near genes chr3R 10495333 intergenic not near genes chr3R 13217322 intergenic not near genes chr3R_5_10495001 chr3R_10495001 RAL-897 1617 chr3R 13391633 13391666 chr3R 13391711 13391744 22 77 4.5 6.0 5.2 3.5 111 chr3R 13391633 intron CCHa2 - chr3R 13391688 intron CCHa2 - chr3R 13391744 intron CCHa2 - chr3R_22_13390001 chr3R_13390001 RAL-897 1618 chr3R 13394669 13394707 chr3R 13395018 13395047 18 347 3.0 4.5 3.8 3.8 378 chr3R 13394669 intron CCHa2 - chr3R 13394858 intron CCHa2 - chr3R 13395047 intron CCHa2 - chr3R_18_13390001 chr3R_13390001 RAL-897 1619 chr3R 13401020 13401048 chr3R 13401111 13401139 6 91 0.5 3.0 1.8 2.1 119 chr3R 13401020 intron CG9796 - chr3R 13401080 intron CG9796 - chr3R 13401139 intron CG9796 - chr3R_6_13400001 chr3R_13400001 RAL-897 1620 chr3R 13525184 13525212 chr3R 13525284 13525313 6 99 4.5 2.0 3.2 1.4 129 chr3R 13525184 intergenic not near genes chr3R 13525248 intergenic not near genes chr3R 13525313 intergenic not near genes chr3R_6_13525001 chr3R_13525001 RAL-897 1621 chr3R 13603056 13603077 chr3R 13603147 13603165 8 90 4.5 3.5 4.0 1.6 109 chr3R 13603056 intergenic not near genes chr3R 13603110 intergenic not near genes chr3R 13603165 intergenic not near genes chr3R_8_13600001 chr3R_13600001 RAL-897 1622 chr3R 13625699 13625723 chr3R 13625780 13625804 4 81 1.0 2.0 1.5 1.6 105 chr3R 13625699 intergenic not near genes chr3R 13625752 intergenic not near genes chr3R 13625804 intergenic not near genes chr3R_4_13625001 chr3R_13625001 RAL-897 1623 chr3R 13659722 13659744 chr3R 13659828 13659850 4 106 0.0 0.0 0.0 4.0 128 chr3R 13659722 intron Hrb87F - chr3R 13659786 intron Hrb87F - chr3R 13659850 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-897 1624 chr3R 13672939 13672978 chr3R 13673017 13673056 16 78 2.0 2.0 2.0 5.3 117 chr3R 13672939 intron Task6 - chr3R 13672998 intron Task6 - chr3R 13673056 intron Task6 - chr3R_16_13670001 chr3R_13670001 RAL-897 1625 chr3R 13692800 13692815 chr3R 13692877 13692893 10 77 2.5 9.5 6.0 1.4 93 chr3R 13692800 3` UTR flfl + chr3R 13692846 3` UTR flfl + chr3R 13692893 3` UTR flfl + chr3R_10_13690001 chr3R_13690001 RAL-897 1626 chr3R 13693028 13693028 chr3R 21907534 21907536 4 8214506 8.5 28.5 18.5 0.2 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_4_17800001 chr3R_17800001 RAL-897 1627 chr3R 13745431 13745437 chr3R 13745549 13745555 6 118 2.0 1.5 1.8 2.1 124 chr3R 13745431 intron CG34383 + chr3R 13745493 intron CG34383 + chr3R 13745555 intron CG34383 + chr3R_6_13745001 chr3R_13745001 RAL-897 1628 chr3R 13782056 13782087 chr3R 13782137 13782168 15 78 2.0 4.0 3.0 3.8 112 chr3R 13782056 exon CG9286 + chr3R 13782112 intergenic CG9286 +,Dip-B + chr3R 13782168 intergenic CG9286 +,Dip-B + chr3R_15_13780001 chr3R_13780001 RAL-897 1629 chr3R 13850330 13850341 chr3R 13850409 13850429 8 85 0.0 3.0 1.5 3.2 99 chr3R 13850330 intergenic not near genes chr3R 13850380 intergenic not near genes chr3R 13850429 intergenic not near genes chr3R_8_13850001 chr3R_13850001 RAL-897 1630 chr3R 13863679 13863715 chr3R 13863767 13863803 10 81 3.0 6.0 4.5 1.8 124 chr3R 13863679 intergenic not near genes chr3R 13863741 intergenic not near genes chr3R 13863803 intergenic not near genes chr3R_10_13860001 chr3R_13860001 RAL-897 1631 chr3R 14003325 14003336 chr3R 14003519 14003530 5 194 0.5 3.5 2.0 1.7 205 chr3R 14003325 intron rdx - chr3R 14003428 intron rdx - chr3R 14003530 intron rdx - chr3R_5_14000001 chr3R_14000001 RAL-897 1632 chr3R 14019217 14019239 chr3R 14019306 14019328 10 88 4.5 3.0 3.8 2.1 111 chr3R 14019217 intron rdx - chr3R 14019272 intron rdx - chr3R 14019328 intron rdx - chr3R_10_14015001 chr3R_14015001 RAL-897 1633 chr3R 14021649 14021677 chr3R 14023466 14023494 S-element 6 1815 4.0 3.5 3.8 1.2 1845 chr3R 14021649 intron rdx - chr3R 14022572 intron rdx - chr3R 14023494 intron rdx - chr3R_6_14020001 chr3R_14020001 RAL-897 1634 chr3R 14049021 14049047 chr3R 14049099 14049125 5 79 0.5 2.0 1.2 2.3 104 chr3R 14049021 intergenic not near genes chr3R 14049073 intergenic not near genes chr3R 14049125 intergenic not near genes chr3R_5_14045001 chr3R_14045001 RAL-897 1635 chr3R 14058127 14058153 chr3R 14058246 14058272 12 119 0.5 2.0 1.2 5.5 145 chr3R 14058127 intron foxo + chr3R 14058200 intron foxo + chr3R 14058272 intron foxo + chr3R_12_14055001 chr3R_14055001 RAL-897 1636 chr3R 14117440 14117464 chr3R 14117514 14117540 6 76 3.0 2.0 2.5 1.7 100 chr3R 14117440 intron Kif19A - chr3R 14117490 intron Kif19A - chr3R 14117540 intron Kif19A - chr3R_6_14115001 chr3R_14115001 RAL-897 1637 chr3R 14136516 14136543 chr3R 14136885 14136911 7 369 1.5 3.5 2.5 2.0 395 chr3R 14136516 intergenic not near genes chr3R 14136714 intergenic not near genes chr3R 14136911 intergenic not near genes chr3R_7_14135001 chr3R_14135001 RAL-897 1638 chr3R 14174954 14174991 chr3R 14175041 14175075 12 86 5.5 7.5 6.5 1.6 121 chr3R 14174954 3` UTR Dop1R1 - chr3R 14175014 3` UTR Dop1R1 - chr3R 14175075 3` UTR Dop1R1 - chr3R_12_14175001 chr3R_14175001 RAL-897 1639 chr3R 14176974 14177010 chr3R 14177058 14177094 22 83 5.0 5.0 5.0 3.7 120 chr3R 14176974 3` UTR Dop1R1 - chr3R 14177034 3` UTR Dop1R1 - chr3R 14177094 3` UTR Dop1R1 - chr3R_22_14175001 chr3R_14175001 RAL-897 1640 chr3R 14246410 14246416 chr3R 14247888 14247893 jockey 6 1483 3.5 4.0 3.8 1.2 1483 chr3R 14246410 intergenic not near genes chr3R 14247152 intergenic not near genes chr3R 14247893 intergenic not near genes chr3R_6_14245001 chr3R_14245001 RAL-897 1641 chr3R 14253703 14253720 chr3R 14253782 14253799 6 79 2.5 5.0 3.8 1.2 96 chr3R 14253703 intron Aats-met - chr3R 14253751 intron Aats-met - chr3R 14253799 intron Aats-met - chr3R_6_14250001 chr3R_14250001 RAL-897 1642 chr3R 14329517 14329549 chr3R 14329761 14329793 6 240 2.0 0.5 1.2 2.7 276 chr3R 14329517 3` UTR spn-B + chr3R 14329655 intergenic spn-B +,NK7.1 - chr3R 14329793 intergenic spn-B +,NK7.1 - chr3R_6_14325001 chr3R_14325001 RAL-897 1643 chr3R 14364064 14364091 chr3R 14364139 14364143 9 70 5.0 6.0 5.5 1.4 79 chr3R 14364064 intron NK7.1 - chr3R 14364104 intron NK7.1 - chr3R 14364143 intron NK7.1 - chr3R_9_14360001 chr3R_14360001 RAL-897 1644 chr3R 14527403 14527412 chr3R 14527480 14527489 7 75 18.0 7.5 12.8 0.5 86 chr3R 14527403 intron Pde6 - chr3R 14527446 intron Pde6 - chr3R 14527489 intron Pde6 - chr3R_7_14525001 chr3R_14525001 RAL-897 1645 chr3R 14547622 14547647 chr3R 14547800 14547833 6 180 5.0 2.5 3.8 1.2 211 chr3R 14547622 intron Pde6 - chr3R 14547728 intron Pde6 - chr3R 14547833 intron Pde6 - chr3R_6_14545001 chr3R_14545001 RAL-897 1646 chr3R 14577957 14577987 chr3R 14578073 14578103 9 116 3.0 2.0 2.5 2.6 146 chr3R 14577957 intron stumps + chr3R 14578030 intron stumps + chr3R 14578103 intron stumps + chr3R_9_14575001 chr3R_14575001 RAL-897 1647 chr3R 14608470 14608475 chr3R 14608562 14608567 4 92 1.0 5.5 3.2 1.0 97 chr3R 14608470 intergenic stumps + chr3R 14608518 intergenic stumps + chr3R 14608567 intergenic stumps + chr3R_4_14605001 chr3R_14605001 RAL-897 1648 chr3R 14617027 14617059 chr3R 14617103 14617135 14 76 3.0 4.0 3.5 3.1 108 chr3R 14617027 intron CG14853 + chr3R 14617081 intron CG14853 + chr3R 14617135 intron CG14853 + chr3R_14_14615001 chr3R_14615001 RAL-897 1649 chr3R 14662318 14662340 chr3R 14662398 14662421 16 80 4.5 7.0 5.8 2.4 103 chr3R 14662318 intron Rad17 - chr3R 14662370 intron Rad17 - chr3R 14662421 exon Rad17 - chr3R_16_14660001 chr3R_14660001 RAL-897 1650 chr3R 14704391 14704417 chr3R 14704468 14704494 8 77 2.0 6.0 4.0 1.6 103 chr3R 14704391 intron kibra - chr3R 14704442 intron kibra - chr3R 14704494 intron kibra - chr3R_8_14700001 chr3R_14700001 RAL-897 1651 chr3R 14806677 14806689 chr3R 14806754 14806766 6 76 8.5 4.5 6.5 0.8 89 chr3R 14806677 3` UTR btsz - chr3R 14806722 3` UTR btsz - chr3R 14806766 3` UTR btsz - chr3R_6_14805001 chr3R_14805001 RAL-897 1652 chr3R 14806691 14806704 chr3R 14806753 14806781 7 72 5.5 3.5 4.5 1.3 90 chr3R 14806691 3` UTR btsz - chr3R 14806736 3` UTR btsz - chr3R 14806781 3` UTR btsz - chr3R_7_14805001 chr3R_14805001 RAL-897 1653 chr3R 14836703 14836719 chr3R 14836788 14836804 13 85 7.5 8.0 7.8 1.5 101 chr3R 14836703 intron btsz - chr3R 14836754 intron btsz - chr3R 14836804 intron btsz - chr3R_13_14835001 chr3R_14835001 RAL-897 1654 chr3R 14836720 14836728 chr3R 14836784 14836813 8 75 5.0 6.5 5.8 1.2 93 chr3R 14836720 intron btsz - chr3R 14836766 intron btsz - chr3R 14836813 intron btsz - chr3R_8_14835001 chr3R_14835001 RAL-897 1655 chr3R 14898474 14898504 chr3R 14898594 14898624 10 119 2.5 3.0 2.8 2.6 150 chr3R 14898474 intergenic Nup93-2 -,CG3817 + chr3R 14898549 intergenic Nup93-2 -,CG3817 + chr3R 14898624 intergenic CG3817 +,Nup93-2 - chr3R_10_14895001 chr3R_14895001 RAL-897 1656 chr3R 14994589 14994616 chr3R 14994678 14994705 13 83 6.5 4.0 5.2 2.1 116 chr3R 14994589 intergenic not near genes chr3R 14994647 intergenic not near genes chr3R 14994705 intergenic not near genes chr3R_13_14990001 chr3R_14990001 RAL-897 1657 chr3R 15041425 15041457 chr3R 15045193 15045225 Doc 8 3768 1.5 4.0 2.8 2.1 3800 chr3R 15041425 intergenic not near genes chr3R 15043325 intergenic not near genes chr3R 15045225 intergenic not near genes chr3R_8_15040001 chr3R_15040001 RAL-897 1658 chr3R 15059468 15059478 chr3R 15059555 15059565 5 87 0.0 7.0 3.5 1.1 97 chr3R 15059468 intron dpr9 - chr3R 15059516 intron dpr9 - chr3R 15059565 intron dpr9 - chr3R_5_15055001 chr3R_15055001 RAL-897 1659 chr3R 15075946 15075974 chr3R 15076056 15076083 10 106 6.5 3.0 4.8 1.7 137 chr3R 15075946 intron dpr9 - chr3R 15076014 intron dpr9 - chr3R 15076083 intron dpr9 - chr3R_10_15075001 chr3R_15075001 RAL-897 1660 chr3R 15078341 15078367 chr3R 15078421 15078446 16 79 0.5 3.5 2.0 5.3 105 chr3R 15078341 intergenic CG6974 - chr3R 15078394 intergenic CG6974 - chr3R 15078446 intergenic CG6974 - chr3R_16_15075001 chr3R_15075001 RAL-897 1661 chr3R 15079807 15079838 chr3R 15080048 15080073 pogo 10 240 1.5 1.0 1.2 4.5 266 chr3R 15079807 3` UTR CG6966 - chr3R 15079940 3` UTR CG6966 - chr3R 15080073 3` UTR CG6966 - chr3R_10_15075001 chr3R_15075001 RAL-897 1662 chr3R 15088074 15088102 chr3R 15088170 15088200 4 97 5.0 0.0 2.5 1.1 126 chr3R 15088074 intron CG6966 - chr3R 15088137 intron CG6966 - chr3R 15088200 intron CG6966 - chr3R_4_15085001 chr3R_15085001 RAL-897 1663 chr3R 15114916 15114946 chr3R 15114992 15115023 5 76 2.5 2.0 2.2 1.6 107 chr3R 15114916 intron CG42788 - chr3R 15114970 intron CG42788 - chr3R 15115023 intron CG42788 - chr3R_5_15110001 chr3R_15110001 RAL-897 1664 chr3R 15146527 15146548 chr3R 15146626 15146634 7 96 2.0 2.0 2.0 2.3 107 chr3R 15146527 intron GlyS - chr3R 15146580 intron GlyS - chr3R 15146634 intron GlyS - chr3R_7_15145001 chr3R_15145001 RAL-897 1665 chr3R 15155772 15155800 chr3R 15156084 15156112 14 311 4.5 4.5 4.5 2.5 340 chr3R 15155772 intron Gyc88E + chr3R 15155942 intron Gyc88E + chr3R 15156112 intron Gyc88E + chr3R_14_15155001 chr3R_15155001 RAL-897 1666 chr3R 15162551 15162578 chr3R 15167318 15167345 F-element 11 4764 3.0 2.5 2.8 2.9 4794 chr3R 15162551 intron Gyc88E + chr3R 15164948 intron Gyc88E + chr3R 15167345 intron Gyc88E + chr3R_11_15160001 chr3R_15160001 RAL-897 1667 chr3R 15225297 15225332 chr3R 15225377 15225412 15 77 3.5 5.0 4.2 2.9 115 chr3R 15225297 5` UTR CG31344 - chr3R 15225354 intergenic CG31344 -,Caf1 + chr3R 15225412 intergenic CG31344 -,Caf1 + chr3R_15_15225001 chr3R_15225001 RAL-897 1668 chr3R 15265405 15265430 chr3R 15265490 15265515 7 85 2.5 1.5 2.0 2.3 110 chr3R 15265405 intergenic Set +,Oscp + chr3R 15265460 intergenic Oscp +,Set + chr3R 15265515 intergenic Oscp +,Set + chr3R_7_15265001 chr3R_15265001 RAL-897 1669 chr3R 15416248 15416275 chr3R 15416326 15416355 11 78 7.0 8.0 7.5 1.3 107 chr3R 15416248 3` UTR Atx2 + chr3R 15416302 3` UTR Atx2 + chr3R 15416355 3` UTR Atx2 + chr3R_11_15415001 chr3R_15415001 RAL-897 1670 chr3R 15594658 15594673 chr3R 15594739 15594755 5 82 0.0 2.5 1.2 2.3 97 chr3R 15594658 intergenic not near genes chr3R 15594706 intergenic not near genes chr3R 15594755 intergenic not near genes chr3R_5_15590001 chr3R_15590001 RAL-897 1671 chr3R 15601163 15601196 chr3R 15608685 15608718 412 16 7520 10.5 6.5 8.5 1.7 7555 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_16_15600001 chr3R_15600001 RAL-897 1672 chr3R 15635232 15635240 chr3R 15635344 15635352 4 112 0.0 2.5 1.2 1.8 120 chr3R 15635232 intergenic CG43335 + chr3R 15635292 intergenic CG43335 + chr3R 15635352 intergenic CG43335 + chr3R_4_15635001 chr3R_15635001 RAL-897 1673 chr3R 15646795 15646800 chr3R 15646878 15646883 4 83 1.0 4.0 2.5 1.1 88 chr3R 15646795 intergenic not near genes chr3R 15646839 intergenic not near genes chr3R 15646883 intergenic not near genes chr3R_4_15645001 chr3R_15645001 RAL-897 1674 chr3R 15734174 15734201 chr3R 15734262 15734292 7 88 8.5 0.5 4.5 1.3 118 chr3R 15734174 intergenic not near genes chr3R 15734233 intergenic not near genes chr3R 15734292 intergenic not near genes chr3R_7_15730001 chr3R_15730001 RAL-897 1675 chr3R 15790133 15790292 chr3R 15790240 15790407 108 110 10.5 20.0 15.2 6.7 274 chr3R 15790133 exon c(3)G - chr3R 15790270 exon c(3)G - chr3R 15790407 exon c(3)G - chr3R_108_15790001 chr3R_15790001 RAL-897 1676 chr3R 15790379 15790382 chr3R 15790584 15790588 9 206 13.0 64.5 38.8 0.2 209 chr3R 15790379 exon c(3)G - chr3R 15790484 exon c(3)G - chr3R 15790588 exon c(3)G - chr3R_9_15790001 chr3R_15790001 RAL-897 1677 chr3R 15790383 15790407 chr3R 15790575 15790585 69 199 15.5 47.5 31.5 2.1 202 chr3R 15790383 exon c(3)G - chr3R 15790484 exon c(3)G - chr3R 15790585 exon c(3)G - chr3R_69_15790001 chr3R_15790001 RAL-897 1678 chr3R 15790836 15790874 chr3R 15790952 15790990 83 115 38.0 50.0 44.0 1.8 154 chr3R 15790836 exon c(3)G - chr3R 15790913 intron c(3)G - chr3R 15790990 exon c(3)G - chr3R_83_15790001 chr3R_15790001 RAL-897 1679 chr3R 15811503 15811535 chr3R 15811740 15811765 16 233 5.5 4.0 4.8 2.8 262 chr3R 15811503 intron alpha-Man-IIb + chr3R 15811634 intron alpha-Man-IIb + chr3R 15811765 intron,3` UTR alpha-Man-IIb +,CR45211 - chr3R_16_15810001 chr3R_15810001 RAL-897 1680 chr3R 15892652 15892659 chr3R 15892732 15892740 4 81 12.0 2.0 7.0 0.5 88 chr3R 15892652 intron CG14877 - chr3R 15892696 intron CG14877 - chr3R 15892740 intron CG14877 - chr3R_4_15890001 chr3R_15890001 RAL-897 1681 chr3R 15892661 15892686 chr3R 15892731 15892767 5 76 5.0 2.0 3.5 1.1 106 chr3R 15892661 intron CG14877 - chr3R 15892714 intron CG14877 - chr3R 15892767 intron CG14877 - chr3R_5_15890001 chr3R_15890001 RAL-897 1682 chr3R 16023864 16023888 chr3R 16023941 16023965 6 77 1.0 4.0 2.5 1.7 101 chr3R 16023864 intergenic not near genes chr3R 16023914 intergenic not near genes chr3R 16023965 intergenic not near genes chr3R_6_16020001 chr3R_16020001 RAL-897 1683 chr3R 16246526 16246557 chr3R 16246599 16246633 6 75 0.0 4.5 2.2 1.9 107 chr3R 16246526 intron tara + chr3R 16246580 intron tara + chr3R 16246633 intron tara + chr3R_6_16245001 chr3R_16245001 RAL-897 1684 chr3R 16256580 16256591 chr3R 16256669 16256681 5 90 7.0 0.0 3.5 1.1 101 chr3R 16256580 intron tara + chr3R 16256630 intron tara + chr3R 16256681 intron tara + chr3R_5_16255001 chr3R_16255001 RAL-897 1685 chr3R 16352648 16352656 chr3R 16354873 16354881 5 2224 8.0 4.5 6.2 0.7 2233 chr3R 16352648 intron CG10311 - chr3R 16353764 intron CG10311 - chr3R 16354881 intron CG10311 - chr3R_5_16350001 chr3R_16350001 RAL-897 1686 chr3R 16374293 16374330 chr3R 16374410 16374447 9 115 4.0 1.5 2.8 2.4 154 chr3R 16374293 intergenic ss - chr3R 16374370 intergenic ss - chr3R 16374447 3` UTR ss - chr3R_9_16370001 chr3R_16370001 RAL-897 1687 chr3R 16472579 16472598 chr3R 16472655 16472657 10 72 9.5 8.0 8.8 1.0 78 chr3R 16472579 intergenic Gyc-89Da + chr3R 16472618 5` UTR Gyc-89Da + chr3R 16472657 5` UTR Gyc-89Da + chr3R_10_16470001 chr3R_16470001 RAL-897 1688 chr3R 16621815 16621838 chr3R 16621979 16621998 5 164 3.5 7.0 5.2 0.8 183 chr3R 16621815 exon CG14893 + chr3R 16621906 exon CG14893 + chr3R 16621998 exon CG14893 + chr3R_5_16620001 chr3R_16620001 RAL-897 1689 chr3R 16621839 16621842 chr3R 16621978 16622008 4 153 3.0 7.0 5.0 0.7 169 chr3R 16621839 exon CG14893 + chr3R 16621924 exon CG14893 + chr3R 16622008 exon CG14893 + chr3R_4_16620001 chr3R_16620001 RAL-897 1690 chr3R 16671508 16671536 chr3R 16671594 16671620 5 85 6.0 9.5 7.8 0.6 112 chr3R 16671508 intron Ubx - chr3R 16671564 intron Ubx - chr3R 16671620 intron Ubx - chr3R_5_16670001 chr3R_16670001 RAL-897 1691 chr3R 16756324 16756345 chr3R 16762510 16762535 diver 9 6190 8.0 2.0 5.0 1.5 6211 chr3R 16756324 intron bxd - chr3R 16759430 intron bxd - chr3R 16762535 intron bxd - chr3R_9_16755001 chr3R_16755001 RAL-897 1692 chr3R 16789969 16789974 chr3R 16790097 16790104 4 130 5.5 2.0 3.8 0.8 135 chr3R 16789969 3` UTR Glut3 + chr3R 16790036 intergenic Glut3 + chr3R 16790104 intergenic Glut3 + chr3R_4_16790001 chr3R_16790001 RAL-897 1693 chr3R 16836963 16836981 chr3R 16837290 16837309 4 328 5.5 2.5 4.0 0.8 346 chr3R 16836963 intron iab-8 - chr3R 16837136 intron iab-8 - chr3R 16837309 intron iab-8 - chr3R_4_16835001 chr3R_16835001 RAL-897 1694 chr3R 16846714 16846744 chr3R 16846799 16846829 5 85 0.5 3.5 2.0 1.7 115 chr3R 16846714 intron iab-8 - chr3R 16846772 intron iab-8 - chr3R 16846829 intron iab-8 - chr3R_5_16845001 chr3R_16845001 RAL-897 1695 chr3R 17155680 17155708 chr3R 17155757 17155761 7 70 11.0 17.0 14.0 0.5 81 chr3R 17155680 exon Mur89F - chr3R 17155720 exon Mur89F - chr3R 17155761 exon Mur89F - chr3R_7_17155001 chr3R_17155001 RAL-897 1696 chr3R 17194408 17194430 chr3R 17194486 17194495 11 77 2.0 6.5 4.2 2.1 87 chr3R 17194408 intron Mur89F - chr3R 17194452 intron Mur89F - chr3R 17194495 intron Mur89F - chr3R_11_17190001 chr3R_17190001 RAL-897 1697 chr3R 17214609 17214626 chr3R 17214695 17214712 4 86 1.5 0.5 1.0 2.0 103 chr3R 17214609 intergenic not near genes chr3R 17214660 intergenic not near genes chr3R 17214712 intergenic not near genes chr3R_4_17210001 chr3R_17210001 RAL-897 1698 chr3R 17294668 17294692 chr3R 17295096 17295120 BS 10 425 6.0 5.0 5.5 1.5 452 chr3R 17294668 intergenic not near genes chr3R 17294894 intergenic not near genes chr3R 17295120 intergenic not near genes chr3R_10_17290001 chr3R_17290001 RAL-897 1699 chr3R 17335165 17335179 chr3R 17335238 17335255 7 75 5.5 5.0 5.2 1.1 90 chr3R 17335165 intron beat-IIa - chr3R 17335210 intron beat-IIa - chr3R 17335255 intron beat-IIa - chr3R_7_17335001 chr3R_17335001 RAL-897 1700 chr3R 17346694 17346704 chr3R 17348257 17348267 F-element 4 1563 1.5 6.5 4.0 0.8 1573 chr3R 17346694 intron beat-IIa - chr3R 17347480 intron beat-IIa - chr3R 17348267 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-897 1701 chr3R 17346706 17346717 chr3R 17348254 17348279 F-element 5 1559 1.5 6.0 3.8 1.0 1573 chr3R 17346706 intron beat-IIa - chr3R 17347492 intron beat-IIa - chr3R 17348279 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-897 1702 chr3R 17355491 17355519 chr3R 17355567 17355594 6 76 4.5 5.0 4.8 1.0 103 chr3R 17355491 intron beat-IIa - chr3R 17355542 intron beat-IIa - chr3R 17355594 intron beat-IIa - chr3R_6_17355001 chr3R_17355001 RAL-897 1703 chr3R 17382027 17382050 chr3R 17382123 17382147 14 97 5.0 5.5 5.2 2.3 120 chr3R 17382027 intron,intron Brf -,lute + chr3R 17382087 intron,intron Brf -,lute + chr3R 17382147 intron,intron,3` UTR Brf -,lute +,CR43196 - chr3R_14_17380001 chr3R_17380001 RAL-897 1704 chr3R 17407003 17407022 chr3R 17407105 17407124 7 102 3.5 4.0 3.8 1.5 121 chr3R 17407003 intron CG42798 + chr3R 17407064 5` UTR CG42798 + chr3R 17407124 exon CG42798 + chr3R_7_17405001 chr3R_17405001 RAL-897 1705 chr3R 17461200 17461232 chr3R 17461282 17461314 12 82 2.0 2.0 2.0 4.0 114 chr3R 17461200 intergenic not near genes chr3R 17461257 intergenic not near genes chr3R 17461314 intergenic not near genes chr3R_12_17460001 chr3R_17460001 RAL-897 1706 chr3R 17463152 17463172 chr3R 17463236 17463257 7 85 3.0 0.0 1.5 2.8 105 chr3R 17463152 intergenic not near genes chr3R 17463204 intergenic not near genes chr3R 17463257 intergenic not near genes chr3R_7_17460001 chr3R_17460001 RAL-897 1707 chr3R 17498852 17498878 chr3R 17498994 17499020 7 142 4.0 5.0 4.5 1.3 168 chr3R 17498852 intron Dscam3 - chr3R 17498936 intron Dscam3 - chr3R 17499020 intron Dscam3 - chr3R_7_17495001 chr3R_17495001 RAL-897 1708 chr3R 17525292 17525320 chr3R 17525381 17525409 4 89 1.5 2.0 1.8 1.4 117 chr3R 17525292 intergenic not near genes chr3R 17525350 intergenic not near genes chr3R 17525409 intergenic not near genes chr3R_4_17525001 chr3R_17525001 RAL-897 1709 chr3R 17531905 17531914 chr3R 17531981 17531989 4 76 0.0 5.0 2.5 1.1 84 chr3R 17531905 intergenic CG5823 - chr3R 17531947 intergenic CG5823 - chr3R 17531989 intergenic CG5823 - chr3R_4_17530001 chr3R_17530001 RAL-897 1710 chr3R 17546253 17546269 chr3R 17546337 17546353 9 82 5.5 6.0 5.8 1.3 100 chr3R 17546253 intron Prx3 - chr3R 17546303 intron Prx3 - chr3R 17546353 intron Prx3 - chr3R_9_17545001 chr3R_17545001 RAL-897 1711 chr3R 17565622 17565632 chr3R 17565696 17565697 4 78 1.0 2.0 1.5 1.6 75 chr3R 17565622 intron Hmx + chr3R 17565660 intron Hmx + chr3R 17565697 intron Hmx + chr3R_4_17565001 chr3R_17565001 RAL-897 1712 chr3R 17591286 17591320 chr3R 17591721 17591731 F-element 8 432 9.0 5.5 7.2 1.0 445 chr3R 17591286 intergenic not near genes chr3R 17591508 intergenic not near genes chr3R 17591731 intergenic not near genes chr3R_8_17590001 chr3R_17590001 RAL-897 1713 chr3R 17741503 17741532 chr3R 17741657 17741685 10 154 45.0 42.5 43.8 0.2 182 chr3R 17741503 intron TyrRII + chr3R 17741594 intron TyrRII + chr3R 17741685 intron TyrRII + chr3R_10_17740001 chr3R_17740001 RAL-897 1714 chr3R 17746595 17746622 chr3R 17746671 17746693 9 74 5.5 3.0 4.2 1.7 98 chr3R 17746595 3` UTR TyrRII + chr3R 17746644 3` UTR TyrRII + chr3R 17746693 3` UTR TyrRII + chr3R_9_17745001 chr3R_17745001 RAL-897 1715 chr3R 17823210 17823234 chr3R 17823295 17823319 11 84 1.5 4.0 2.8 2.9 109 chr3R 17823210 intron tinc + chr3R 17823264 intron tinc + chr3R 17823319 intron tinc + chr3R_11_17820001 chr3R_17820001 RAL-897 1716 chr3R 17845204 17845220 chr3R 17845267 17845277 12 67 1.5 4.0 2.8 3.2 73 chr3R 17845204 intron tinc + chr3R 17845240 intron tinc + chr3R 17845277 intron tinc + chr3R_12_17845001 chr3R_17845001 RAL-897 1717 chr3R 17899095 17899101 chr3R 17899173 17899179 4 78 4.5 2.0 3.2 1.0 84 chr3R 17899095 intron Rim - chr3R 17899137 intron Rim - chr3R 17899179 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-897 1718 chr3R 17925852 17925876 chr3R 17927319 17927343 hobo 8 1465 9.5 9.0 9.2 0.8 1491 chr3R 17925852 intron cpo + chr3R 17926598 intron cpo + chr3R 17927343 intron cpo + chr3R_8_17925001 chr3R_17925001 RAL-897 1719 chr3R 17925879 17925884 chr3R 17927317 17927339 hobo 4 1457 7.0 8.5 7.8 0.5 1460 chr3R 17925879 intron cpo + chr3R 17926609 intron cpo + chr3R 17927339 intron cpo + chr3R_4_17925001 chr3R_17925001 RAL-897 1720 chr3R 17960689 17960715 chr3R 17960875 17960900 10 184 3.5 5.5 4.5 1.8 211 chr3R 17960689 intron cpo + chr3R 17960794 intron cpo + chr3R 17960900 intron cpo + chr3R_10_17960001 chr3R_17960001 RAL-897 1721 chr3R 17987777 17987801 chr3R 17987875 17987902 6 100 6.5 3.0 4.8 1.0 125 chr3R 17987777 intron cpo + chr3R 17987840 intron cpo + chr3R 17987902 intron cpo + chr3R_6_17985001 chr3R_17985001 RAL-897 1722 chr3R 18006450 18006461 chr3R 18006518 18006539 7 83 4.0 5.5 4.8 1.2 89 chr3R 18006450 intron cpo + chr3R 18006494 intron cpo + chr3R 18006539 intron cpo + chr3R_7_18005001 chr3R_18005001 RAL-897 1723 chr3R 18032783 18032795 chr3R 18040456 18040468 opus 4 7673 0.0 2.5 1.2 1.8 7685 chr3R 18032783 intergenic not near genes chr3R 18036626 intergenic not near genes chr3R 18040468 intergenic not near genes chr3R_4_18035001 chr3R_18035001 RAL-897 1724 chr3R 18041753 18041773 chr3R 18041830 18041848 6 76 0.5 1.5 1.0 3.0 95 chr3R 18041753 intergenic not near genes chr3R 18041800 intergenic not near genes chr3R 18041848 intergenic not near genes chr3R_6_18040001 chr3R_18040001 RAL-897 1725 chr3R 18098274 18098289 chr3R 18098351 18098366 4 77 0.5 7.5 4.0 0.8 92 chr3R 18098274 intron sr + chr3R 18098320 intron sr + chr3R 18098366 intron sr + chr3R_4_18095001 chr3R_18095001 RAL-897 1726 chr3R 18352572 18352605 chr3R 18352665 18352698 8 93 4.0 1.5 2.8 2.1 126 chr3R 18352572 intron CG15803 - chr3R 18352635 intron CG15803 - chr3R 18352698 intron CG15803 - chr3R_8_18350001 chr3R_18350001 RAL-897 1727 chr3R 18501597 18501622 chr3R 18501678 18501701 16 81 2.5 4.5 3.5 3.6 104 chr3R 18501597 intron fru - chr3R 18501649 intron fru - chr3R 18501701 intron fru - chr3R_16_18500001 chr3R_18500001 RAL-897 1728 chr3R 18541537 18541548 chr3R 18541612 18541624 6 75 5.0 2.0 3.5 1.3 87 chr3R 18541537 intron fru - chr3R 18541580 intron fru - chr3R 18541624 intron fru - chr3R_6_18540001 chr3R_18540001 RAL-897 1729 chr3R 18606512 18606528 chr3R 18610744 18610758 F-element 4 4232 5.0 1.0 3.0 1.0 4246 chr3R 18606512 intron,intron qin +,CG14304 - chr3R 18608635 intron,intron qin +,CG14304 - chr3R 18610758 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-897 1730 chr3R 18695764 18695780 chr3R 18695848 18695858 4 82 4.5 0.0 2.2 1.2 94 chr3R 18695764 3` UTR CG34282 + chr3R 18695811 intergenic CG34282 + chr3R 18695858 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-897 1731 chr3R 18781691 18781720 chr3R 18781767 18781794 5 72 5.5 3.0 4.2 1.0 103 chr3R 18781691 intron CG7720 - chr3R 18781742 intron CG7720 - chr3R 18781794 intron CG7720 - chr3R_5_18780001 chr3R_18780001 RAL-897 1732 chr3R 18784088 18784106 chr3R 18784629 18784653 9 544 4.0 4.5 4.2 1.7 565 chr3R 18784088 intron CG7720 - chr3R 18784370 intron CG7720 - chr3R 18784653 intron CG7720 - chr3R_9_18780001 chr3R_18780001 RAL-897 1733 chr3R 18812075 18812109 chr3R 18812153 18812187 17 77 6.5 7.5 7.0 2.1 112 chr3R 18812075 intron CG18208 - chr3R 18812131 intron CG18208 - chr3R 18812187 intron CG18208 - chr3R_17_18810001 chr3R_18810001 RAL-897 1734 chr3R 18817506 18817540 chr3R 18817604 18817638 7 98 1.0 0.5 0.8 3.9 132 chr3R 18817506 intron CG18208 - chr3R 18817572 intron CG18208 - chr3R 18817638 intron CG18208 - chr3R_7_18815001 chr3R_18815001 RAL-897 1735 chr3R 8991661 8991663 chr3R 18835817 18835819 6 9844155 17.5 17.5 17.5 0.3 9844158 chr3R 8991661 intron E(var)3-9 - chr3R 13913740 intergenic not near genes chr3R 18835819 intron CG18208 - chr3R_6_13910001 chr3R_13910001 RAL-897 1736 chr3R 18839812 18839838 chr3R 18839896 18839922 7 82 2.5 7.5 5.0 1.2 110 chr3R 18839812 intron CG18208 - chr3R 18839867 intron CG18208 - chr3R 18839922 intron CG18208 - chr3R_7_18835001 chr3R_18835001 RAL-897 1737 chr3R 18856343 18856367 chr3R 18856623 18856657 17 286 9.5 6.5 8.0 1.9 314 chr3R 18856343 intergenic not near genes chr3R 18856500 intergenic not near genes chr3R 18856657 intergenic not near genes chr3R_17_18855001 chr3R_18855001 RAL-897 1738 chr3R 18890061 18890083 chr3R 18890139 18890148 8 76 6.0 5.5 5.8 1.2 87 chr3R 18890061 intergenic not near genes chr3R 18890104 intergenic not near genes chr3R 18890148 intergenic not near genes chr3R_8_18890001 chr3R_18890001 RAL-897 1739 chr3R 18901672 18901706 chr3R 18901753 18901785 19 81 6.5 5.5 6.0 2.7 113 chr3R 18901672 3` UTR CG14294 - chr3R 18901728 3` UTR CG14294 - chr3R 18901785 exon CG14294 - chr3R_19_18900001 chr3R_18900001 RAL-897 1740 chr3R 18915940 18915975 chr3R 18916094 18916129 10 153 5.0 1.5 3.2 2.4 189 chr3R 18915940 intron Xrp1 + chr3R 18916034 intron Xrp1 + chr3R 18916129 intron Xrp1 + chr3R_10_18915001 chr3R_18915001 RAL-897 1741 chr3R 18932551 18932586 chr3R 18932726 18932761 13 168 2.5 6.0 4.2 2.5 210 chr3R 18932551 intron CG42613 + chr3R 18932656 intron CG42613 + chr3R 18932761 intron CG42613 + chr3R_13_18930001 chr3R_18930001 RAL-897 1742 chr3R 19082537 19082555 chr3R 19082613 19082634 6 77 2.0 1.5 1.8 2.1 97 chr3R 19082537 intron cdi - chr3R 19082586 intron cdi - chr3R 19082634 intron cdi - chr3R_6_19080001 chr3R_19080001 RAL-897 1743 chr3R 19106823 19106843 chr3R 19106913 19106919 5 85 12.5 0.0 6.2 0.7 96 chr3R 19106823 intron CG6040 + chr3R 19106871 intron CG6040 + chr3R 19106919 intron CG6040 + chr3R_5_19105001 chr3R_19105001 RAL-897 1744 chr3R 19136411 19136429 chr3R 19139798 19139872 Bari1 5 3399 72.0 11.0 41.5 0.1 3461 chr3R 19136411 exon Cyp12a4 + chr3R 19138142 intergenic not near genes chr3R 19139872 3` UTR Ppcs - chr3R_5_19135001 chr3R_19135001 RAL-897 1745 chr3R 19178156 19178161 chr3R 19178238 19178256 4 90 4.5 6.5 5.5 0.6 100 chr3R 19178156 3` UTR CG5555 - chr3R 19178206 3` UTR CG5555 - chr3R 19178256 3` UTR CG5555 - chr3R_4_19175001 chr3R_19175001 RAL-897 1746 chr3R 19193003 19193014 chr3R 19197304 19197314 F-element 4 4302 0.5 10.0 5.2 0.6 4311 chr3R 19193003 intron CG31475 + chr3R 19195158 intron CG31475 + chr3R 19197314 intron CG31475 + chr3R_4_19195001 chr3R_19195001 RAL-897 1747 chr3R 19344683 19344695 chr3R 19344817 19344830 4 135 2.0 2.0 2.0 1.3 147 chr3R 19344683 intergenic not near genes chr3R 19344756 intergenic not near genes chr3R 19344830 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-897 1748 chr3R 19563721 19563745 chr3R 19563796 19563823 12 77 3.0 0.5 1.8 4.3 102 chr3R 19563721 intron Dys + chr3R 19563772 intron Dys + chr3R 19563823 intron Dys + chr3R_12_19560001 chr3R_19560001 RAL-897 1749 chr3R 19602571 19602596 chr3R 19602651 19602675 6 79 3.0 0.0 1.5 2.4 104 chr3R 19602571 exon CG7333 + chr3R 19602623 3` UTR CG7333 + chr3R 19602675 intergenic CG7333 + chr3R_6_19600001 chr3R_19600001 RAL-897 1750 chr3R 19668001 19668018 chr3R 19668083 19668101 5 83 0.0 2.5 1.2 2.3 100 chr3R 19668001 intron CG7432 + chr3R 19668051 intron CG7432 + chr3R 19668101 intron CG7432 + chr3R_5_19665001 chr3R_19665001 RAL-897 1751 chr3R 19681599 19681626 chr3R 19681690 19681717 6 91 2.0 1.5 1.8 2.1 118 chr3R 19681599 intron Naam + chr3R 19681658 intron Naam + chr3R 19681717 intron Naam + chr3R_6_19680001 chr3R_19680001 RAL-897 1752 chr3R 19683255 19683269 chr3R 19683406 19683419 6 152 7.0 4.0 5.5 0.9 164 chr3R 19683255 intron Naam + chr3R 19683337 intron Naam + chr3R 19683419 intron Naam + chr3R_6_19680001 chr3R_19680001 RAL-897 1753 chr3R 19716226 19716243 chr3R 19716296 19716320 8 76 0.0 0.5 0.2 6.7 94 chr3R 19716226 intergenic CG34286 - chr3R 19716273 intergenic CG34286 - chr3R 19716320 intergenic CG34286 - chr3R_8_19715001 chr3R_19715001 RAL-897 1754 chr3R 19755425 19755457 chr3R 19755520 19755550 9 91 2.5 5.0 3.8 1.9 125 chr3R 19755425 intron GluClalpha + chr3R 19755488 intron GluClalpha + chr3R 19755550 intron GluClalpha + chr3R_9_19755001 chr3R_19755001 RAL-897 1755 chr3R 19839531 19839560 chr3R 19839763 19839791 9 231 5.5 4.5 5.0 1.5 260 chr3R 19839531 intergenic not near genes chr3R 19839661 intergenic not near genes chr3R 19839791 intergenic not near genes chr3R_9_19835001 chr3R_19835001 RAL-897 1756 chr3R 19915871 19915901 chr3R 19916059 19916090 10 186 2.0 5.0 3.5 2.2 219 chr3R 19915871 3` UTR CG4465 - chr3R 19915980 3` UTR CG4465 - chr3R 19916090 exon CG4465 - chr3R_10_19915001 chr3R_19915001 RAL-897 1757 chr3R 19930587 19930613 chr3R 19930671 19930695 13 84 2.5 3.0 2.8 3.4 108 chr3R 19930587 intron Hs6st - chr3R 19930641 intron Hs6st - chr3R 19930695 intron Hs6st - chr3R_13_19930001 chr3R_19930001 RAL-897 1758 chr3R 20008821 20008856 chr3R 20008902 20008933 10 80 2.0 2.5 2.2 3.1 112 chr3R 20008821 intergenic MED25 +,Hs6st - chr3R 20008877 intergenic MED25 +,Hs6st - chr3R 20008933 intergenic MED25 +,Hs6st - chr3R_10_20005001 chr3R_20005001 RAL-897 1759 chr3R 20059465 20059498 chr3R 20059545 20059578 11 76 3.0 3.5 3.2 2.6 113 chr3R 20059465 intron CG4390 - chr3R 20059522 intron CG4390 - chr3R 20059578 exon CG4390 - chr3R_11_20055001 chr3R_20055001 RAL-897 1760 chr3R 20076379 20076404 chr3R 20076460 20076468 11 78 8.5 4.0 6.2 1.5 89 chr3R 20076379 intergenic not near genes chr3R 20076424 intergenic not near genes chr3R 20076468 intergenic not near genes chr3R_11_20075001 chr3R_20075001 RAL-897 1761 chr3R 20077036 20077068 chr3R 20077121 20077153 12 82 0.5 1.0 0.8 6.7 117 chr3R 20077036 intergenic not near genes chr3R 20077094 intergenic not near genes chr3R 20077153 intergenic not near genes chr3R_12_20075001 chr3R_20075001 RAL-897 1762 chr3R 20109538 20109568 chr3R 20114744 20114774 copia 6 5206 2.0 4.0 3.0 1.5 5236 chr3R 20109538 intergenic not near genes chr3R 20112156 intergenic not near genes chr3R 20114774 intergenic CG10887 + chr3R_6_20110001 chr3R_20110001 RAL-897 1763 chr3R 20137601 20137631 chr3R 20137691 20137706 11 87 5.0 4.0 4.5 2.0 105 chr3R 20137601 intergenic not near genes chr3R 20137654 intergenic not near genes chr3R 20137706 intergenic not near genes chr3R_11_20135001 chr3R_20135001 RAL-897 1764 chr3R 20151312 20151332 chr3R 20151442 20151463 9 131 3.0 3.0 3.0 2.2 151 chr3R 20151312 intergenic not near genes chr3R 20151388 intergenic not near genes chr3R 20151463 intergenic not near genes chr3R_9_20150001 chr3R_20150001 RAL-897 1765 chr3R 20156715 20156716 chr3R 20165862 20165866 roo 5 9158 4.0 2.5 3.2 1.2 9151 chr3R 20156715 intergenic not near genes chr3R 20161290 intergenic not near genes chr3R 20165866 intergenic not near genes chr3R_5_20160001 chr3R_20160001 RAL-897 1766 chr3R 20205404 20205596 chr3R 20205520 20205718 16 113 2.5 4.0 3.2 3.8 314 chr3R 20205404 intron Nlg4 + chr3R 20205561 intron Nlg4 + chr3R 20205718 intron Nlg4 + chr3R_16_20205001 chr3R_20205001 RAL-897 1767 chr3R 20266518 20266542 chr3R 20272989 20273013 Burdock 5 6471 1.5 4.0 2.8 1.3 6495 chr3R 20266518 intron cic + chr3R 20269766 intron cic + chr3R 20273013 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-897 1768 chr3R 20282282 20282304 chr3R 20282358 20282380 7 76 0.5 2.5 1.5 2.8 98 chr3R 20282282 intron cic + chr3R 20282331 intron cic + chr3R 20282380 intron cic + chr3R_7_20280001 chr3R_20280001 RAL-897 1769 chr3R 20312857 20312877 chr3R 20312942 20312963 8 86 7.0 4.5 5.8 1.2 106 chr3R 20312857 intron CG42668 + chr3R 20312910 intron CG42668 + chr3R 20312963 intron CG42668 + chr3R_8_20310001 chr3R_20310001 RAL-897 1770 chr3R 20434846 20434853 chr3R 20435031 20435038 4 185 5.5 1.0 3.2 1.0 192 chr3R 20434846 intron Gfrl - chr3R 20434942 intron Gfrl - chr3R 20435038 intron Gfrl - chr3R_4_20430001 chr3R_20430001 RAL-897 1771 chr3R 20472155 20472187 chr3R 20472237 20472269 6 81 0.5 2.5 1.5 2.4 114 chr3R 20472155 intron Gfrl - chr3R 20472212 intron Gfrl - chr3R 20472269 intron Gfrl - chr3R_6_20470001 chr3R_20470001 RAL-897 1772 chr3R 20489018 20489034 chr3R 20489094 20489108 4 76 1.0 0.5 0.8 2.2 90 chr3R 20489018 intergenic not near genes chr3R 20489063 intergenic not near genes chr3R 20489108 intergenic not near genes chr3R_4_20485001 chr3R_20485001 RAL-897 1773 chr3R 20506586 20506613 chr3R 20507389 20507403 BS 8 801 2.0 3.5 2.8 2.1 817 chr3R 20506586 intergenic Or92a + chr3R 20506994 intergenic CG4288 - chr3R 20507403 3` UTR CG4288 - chr3R_8_20505001 chr3R_20505001 RAL-897 1774 chr3R 20516540 20516570 chr3R 20516896 20516905 8 353 3.5 7.0 5.2 1.3 365 chr3R 20516540 intergenic not near genes chr3R 20516722 intergenic not near genes chr3R 20516905 intergenic not near genes chr3R_8_20515001 chr3R_20515001 RAL-897 1775 chr3R 20542937 20542949 chr3R 20543020 20543031 4 82 18.5 7.5 13.0 0.3 94 chr3R 20542937 intron Stat92E - chr3R 20542984 intron Stat92E - chr3R 20543031 intron Stat92E - chr3R_4_20540001 chr3R_20540001 RAL-897 1776 chr3R 20686962 20686983 chr3R 20687397 20687416 8 434 9.0 3.0 6.0 1.1 454 chr3R 20686962 intergenic not near genes chr3R 20687189 intergenic not near genes chr3R 20687416 intergenic not near genes chr3R_8_20685001 chr3R_20685001 RAL-897 1777 chr3R 20707748 20707774 chr3R 20707963 20707989 4 215 2.0 3.0 2.5 1.1 241 chr3R 20707748 intron Oamb - chr3R 20707868 intron Oamb - chr3R 20707989 intron Oamb - chr3R_4_20705001 chr3R_20705001 RAL-897 1778 chr3R 20722851 20722883 chr3R 20722978 20723006 11 125 6.5 3.5 5.0 1.8 155 chr3R 20722851 intergenic not near genes chr3R 20722928 intergenic not near genes chr3R 20723006 intergenic not near genes chr3R_11_20720001 chr3R_20720001 RAL-897 1779 chr3R 20730929 20731061 chr3R 20731029 20731149 5 95 0.0 0.0 0.0 5.0 220 chr3R 20730929 intergenic not near genes chr3R 20731039 intergenic not near genes chr3R 20731149 intergenic CG31205 + chr3R_5_20730001 chr3R_20730001 RAL-897 1780 chr3R 20733760 20733793 chr3R 20733852 20733885 21 89 8.5 3.0 5.8 3.1 125 chr3R 20733760 intergenic not near genes chr3R 20733822 intergenic not near genes chr3R 20733885 intergenic not near genes chr3R_21_20730001 chr3R_20730001 RAL-897 1781 chr3R 20767524 20767539 chr3R 20767603 20767635 4 91 4.5 7.0 5.8 0.6 111 chr3R 20767524 intron Syp + chr3R 20767580 intron Syp + chr3R 20767635 intron Syp + chr3R_4_20765001 chr3R_20765001 RAL-897 1782 chr3R 20771703 20771730 chr3R 20771784 20771811 12 78 0.0 7.5 3.8 2.5 108 chr3R 20771703 intron,intron Syp +,Takl1 - chr3R 20771757 intron,intron Syp +,Takl1 - chr3R 20771811 intron,exon Syp +,Takl1 - chr3R_12_20770001 chr3R_20770001 RAL-897 1783 chr3R 20787441 20787458 chr3R 20787532 20787549 6 91 4.0 2.0 3.0 1.5 108 chr3R 20787441 intron Syp + chr3R 20787495 intron Syp + chr3R 20787549 intron Syp + chr3R_6_20785001 chr3R_20785001 RAL-897 1784 chr3R 20801139 20801168 chr3R 20801216 20801244 5 77 1.5 4.5 3.0 1.2 105 chr3R 20801139 intron Syp + chr3R 20801192 intron Syp + chr3R 20801244 intron Syp + chr3R_5_20800001 chr3R_20800001 RAL-897 1785 chr3R 20806954 20806991 chr3R 20807074 20807111 10 115 4.0 2.5 3.2 2.4 157 chr3R 20806954 3` UTR Syp + chr3R 20807032 3` UTR Syp + chr3R 20807111 3` UTR Syp + chr3R_10_20805001 chr3R_20805001 RAL-897 1786 chr3R 20854474 20854517 chr3R 20859268 20859296 Doc 10 4784 5.0 4.0 4.5 1.8 4822 chr3R 20854474 intron Ir93a - chr3R 20856885 intron Ir93a - chr3R 20859296 exon Ir93a - chr3R_10_20855001 chr3R_20855001 RAL-897 1787 chr3R 20900555 20900570 chr3R 20900636 20900650 4 81 4.5 4.5 4.5 0.7 95 chr3R 20900555 intergenic not near genes chr3R 20900602 intergenic not near genes chr3R 20900650 intergenic not near genes chr3R_4_20900001 chr3R_20900001 RAL-897 1788 chr3R 20916326 20916357 chr3R 20916465 20916496 15 138 3.5 3.0 3.2 3.6 170 chr3R 20916326 intron,intron CG31191 -,hdly + chr3R 20916411 intron,intron CG31191 -,hdly + chr3R 20916496 intron,intron CG31191 -,hdly + chr3R_15_20915001 chr3R_20915001 RAL-897 1789 chr3R 20942813 20942843 chr3R 20942889 20942919 13 74 3.0 5.5 4.2 2.5 106 chr3R 20942813 intron CG31191 - chr3R 20942866 intron CG31191 - chr3R 20942919 intron CG31191 - chr3R_13_20940001 chr3R_20940001 RAL-897 1790 chr3R 20966131 20966155 chr3R 20966214 20966238 6 83 0.0 3.5 1.8 2.1 107 chr3R 20966131 intron Atpalpha + chr3R 20966184 intron Atpalpha + chr3R 20966238 intron Atpalpha + chr3R_6_20965001 chr3R_20965001 RAL-897 1791 chr3R 21020406 21020430 chr3R 21020476 21020506 4 74 1.0 1.0 1.0 2.0 100 chr3R 21020406 3` UTR Rlip + chr3R 21020456 3` UTR Rlip + chr3R 21020506 3` UTR Rlip + chr3R_4_21020001 chr3R_21020001 RAL-897 1792 chr3R 21021842 21021859 chr3R 21022163 21022180 5 321 4.5 3.0 3.8 1.0 338 chr3R 21021842 intron CG17278 - chr3R 21022011 intron CG17278 - chr3R 21022180 intron CG17278 - chr3R_5_21020001 chr3R_21020001 RAL-897 1793 chr3R 21041105 21041129 chr3R 21041257 21041282 11 153 3.5 3.0 3.2 2.6 177 chr3R 21041105 exon Dhc93AB - chr3R 21041194 intron Dhc93AB - chr3R 21041282 intron Dhc93AB - chr3R_11_21040001 chr3R_21040001 RAL-897 1794 chr3R 21074810 21074834 chr3R 21075017 21075051 6 216 0.5 2.5 1.5 2.4 241 chr3R 21074810 intron dmrt93B + chr3R 21074930 intron dmrt93B + chr3R 21075051 intron dmrt93B + chr3R_6_21070001 chr3R_21070001 RAL-897 1795 chr3R 21141678 21141704 chr3R 21150159 21150163 Tirant 15 8473 6.5 6.5 6.5 2.0 8485 chr3R 21141678 intron SNF4Agamma + chr3R 21145920 intron SNF4Agamma + chr3R 21150163 intron SNF4Agamma + chr3R_15_21145001 chr3R_21145001 RAL-897 1796 chr3R 21150806 21150823 chr3R 21150941 21150958 4 135 4.5 3.0 3.8 0.8 152 chr3R 21150806 intron SNF4Agamma + chr3R 21150882 intron SNF4Agamma + chr3R 21150958 intron SNF4Agamma + chr3R_4_21150001 chr3R_21150001 RAL-897 1797 chr3R 21154548 21154585 chr3R 21154753 21154798 8 211 4.5 0.0 2.2 2.5 250 chr3R 21154548 intron SNF4Agamma + chr3R 21154673 intron SNF4Agamma + chr3R 21154798 intron SNF4Agamma + chr3R_8_21150001 chr3R_21150001 RAL-897 1798 chr3R 21163264 21163277 chr3R 21163326 21163354 10 75 3.0 5.5 4.2 1.9 90 chr3R 21163264 intron SNF4Agamma + chr3R 21163309 intron SNF4Agamma + chr3R 21163354 intron SNF4Agamma + chr3R_10_21160001 chr3R_21160001 RAL-897 1799 chr3R 21176807 21176836 chr3R 21176890 21176919 8 82 4.5 3.0 3.8 1.7 112 chr3R 21176807 intron SNF4Agamma + chr3R 21176863 intron SNF4Agamma + chr3R 21176919 intron SNF4Agamma + chr3R_8_21175001 chr3R_21175001 RAL-897 1800 chr3R 21248558 21248567 chr3R 21248642 21248664 7 95 3.0 11.5 7.2 0.9 106 chr3R 21248558 intron ETHR + chr3R 21248611 intron ETHR + chr3R 21248664 intron ETHR + chr3R_7_21245001 chr3R_21245001 RAL-897 1801 chr3R 21251348 21251378 chr3R 21251465 21251495 15 116 5.5 9.0 7.2 1.8 147 chr3R 21251348 intron ETHR + chr3R 21251422 intron ETHR + chr3R 21251495 intron ETHR + chr3R_15_21250001 chr3R_21250001 RAL-897 1802 chr3R 21385935 21385959 chr3R 21386012 21386036 9 77 2.0 3.5 2.8 2.4 101 chr3R 21385935 intergenic not near genes chr3R 21385986 intergenic not near genes chr3R 21386036 intergenic not near genes chr3R_9_21385001 chr3R_21385001 RAL-897 1803 chr3R 21472018 21472034 chr3R 21472094 21472115 6 79 3.0 1.0 2.0 2.0 97 chr3R 21472018 intergenic not near genes chr3R 21472066 intergenic not near genes chr3R 21472115 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-897 1804 chr3R 21476011 21476021 chr3R 21476084 21476109 5 85 6.0 3.0 4.5 0.9 98 chr3R 21476011 intergenic not near genes chr3R 21476060 intergenic not near genes chr3R 21476109 intergenic not near genes chr3R_5_21475001 chr3R_21475001 RAL-897 1805 chr3R 21491175 21491196 chr3R 21491298 21491319 6 121 7.0 5.5 6.2 0.8 144 chr3R 21491175 intergenic not near genes chr3R 21491247 intergenic not near genes chr3R 21491319 intergenic not near genes chr3R_6_21490001 chr3R_21490001 RAL-897 1806 chr3R 21506871 21506912 chr3R 21506957 21506992 5 83 0.0 2.0 1.0 2.5 121 chr3R 21506871 intron C15 + chr3R 21506932 intron C15 + chr3R 21506992 intron C15 + chr3R_5_21505001 chr3R_21505001 RAL-897 1807 chr3R 21518252 21518270 chr3R 21518336 21518353 6 84 0.0 2.5 1.2 2.7 101 chr3R 21518252 intergenic not near genes chr3R 21518302 intergenic not near genes chr3R 21518353 intergenic not near genes chr3R_6_21515001 chr3R_21515001 RAL-897 1808 chr3R 21519994 21520135 chr3R 21520095 21520229 5 93 1.0 1.0 1.0 2.5 235 chr3R 21519994 intergenic not near genes chr3R 21520112 intergenic not near genes chr3R 21520229 intergenic not near genes chr3R_5_21520001 chr3R_21520001 RAL-897 1809 chr3R 21569839 21569864 chr3R 21569920 21569945 10 81 6.0 3.5 4.8 1.7 106 chr3R 21569839 intergenic InR - chr3R 21569892 intergenic InR - chr3R 21569945 intergenic InR - chr3R_10_21565001 chr3R_21565001 RAL-897 1810 chr3R 21595657 21595680 chr3R 21595912 21595934 22 253 9.5 5.5 7.5 2.6 277 chr3R 21595657 intron InR - chr3R 21595796 intron InR - chr3R 21595934 intron InR - chr3R_22_21595001 chr3R_21595001 RAL-897 1811 chr3R 21751134 21751164 chr3R 21753930 21753962 7 2800 43.5 30.0 36.8 0.2 2828 chr3R 21751134 exon CG31233 + chr3R 21752548 exon CG31233 + chr3R 21753962 intergenic CG31198 + chr3R_7_21750001 chr3R_21750001 RAL-897 1812 chr3R 21761126 21761151 chr3R 21768512 21768542 mdg1 10 7390 9.5 6.5 8.0 1.1 7416 chr3R 21761126 exon CG42335 + chr3R 21764834 intron CG42335 + chr3R 21768542 exon CG42335 + chr3R_10_21760001 chr3R_21760001 RAL-897 1813 chr3R 8339246 8339247 chr3R 21907534 21907534 6 13568288 24.0 28.5 26.2 0.2 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-897 1814 chr3R 21907534 21907534 chr3R 28831801 28831802 19 6924268 31.0 30.0 30.5 0.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_19_25365001 chr3R_25365001 RAL-897 1815 chr3R 21907535 21907535 chr3R 28831801 28831802 28 6924266 31.5 30.0 30.8 0.9 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_28_25365001 chr3R_25365001 RAL-897 1816 chr3R 21907536 21907536 chr3R 28831801 28831802 26 6924266 31.5 30.0 30.8 0.8 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-897 1817 chr3R 21924022 21924045 chr3R 21924100 21924123 11 81 8.5 4.0 6.2 1.5 101 chr3R 21924022 intergenic not near genes chr3R 21924072 intergenic not near genes chr3R 21924123 intergenic not near genes chr3R_11_21920001 chr3R_21920001 RAL-897 1818 chr3R 21985229 21985258 chr3R 21985334 21985363 5 105 2.5 2.0 2.2 1.6 134 chr3R 21985229 intron Eip93F + chr3R 21985296 intron Eip93F + chr3R 21985363 intron Eip93F + chr3R_5_21985001 chr3R_21985001 RAL-897 1819 chr3R 22192511 22192542 chr3R 22192730 22192734 12 214 3.5 10.0 6.8 1.5 223 chr3R 22192511 intron SKIP + chr3R 22192622 intron SKIP + chr3R 22192734 intron SKIP + chr3R_12_22190001 chr3R_22190001 RAL-897 1820 chr3R 22234683 22234712 chr3R 22236002 22236031 pogo 8 1318 3.0 1.5 2.2 2.5 1348 chr3R 22234683 intron SKIP + chr3R 22235357 intron SKIP + chr3R 22236031 intron SKIP + chr3R_8_22235001 chr3R_22235001 RAL-897 1821 chr3R 22428580 22428609 chr3R 22428656 22428685 11 74 3.0 5.0 4.0 2.2 105 chr3R 22428580 intron CG13847 - chr3R 22428632 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_11_22425001 chr3R_22425001 RAL-897 1822 chr3R 22450543 22450579 chr3R 22453183 22453219 NOF 17 2637 5.5 5.5 5.5 2.6 2676 chr3R 22450543 intron CG34376 + chr3R 22451881 intron CG34376 + chr3R 22453219 intron CG34376 + chr3R_17_22450001 chr3R_22450001 RAL-897 1823 chr3R 22499833 22499836 chr3R 22499893 22499912 4 72 0.5 10.5 5.5 0.6 79 chr3R 22499833 intron Octbeta1R + chr3R 22499872 intron Octbeta1R + chr3R 22499912 intron Octbeta1R + chr3R_4_22495001 chr3R_22495001 RAL-897 1824 chr3R 22499838 22499843 chr3R 22499886 22499918 7 70 0.5 9.0 4.8 1.2 80 chr3R 22499838 intron Octbeta1R + chr3R 22499878 intron Octbeta1R + chr3R 22499918 intron Octbeta1R + chr3R_7_22495001 chr3R_22495001 RAL-897 1825 chr3R 22516407 22516417 chr3R 22516499 22516499 5 90 3.5 9.5 6.5 0.7 92 chr3R 22516407 intron Octbeta1R + chr3R 22516453 intron Octbeta1R + chr3R 22516499 intron Octbeta1R + chr3R_5_22515001 chr3R_22515001 RAL-897 1826 chr3R 22520765 22520791 chr3R 22520852 22520878 8 87 1.5 3.5 2.5 2.3 113 chr3R 22520765 intron CG5346 - chr3R 22520822 intron CG5346 - chr3R 22520878 intron CG5346 - chr3R_8_22520001 chr3R_22520001 RAL-897 1827 chr3R 22526312 22526317 chr3R 22526392 22526398 4 81 2.0 1.5 1.8 1.4 86 chr3R 22526312 intron CG5346 - chr3R 22526355 intron CG5346 - chr3R 22526398 intron CG5346 - chr3R_4_22525001 chr3R_22525001 RAL-897 1828 chr3R 22538447 22538474 chr3R 22538529 22538559 10 84 2.5 3.0 2.8 2.6 112 chr3R 22538447 intron CG5326 - chr3R 22538503 intron CG5326 - chr3R 22538559 intron CG5326 - chr3R_10_22535001 chr3R_22535001 RAL-897 1829 chr3R 22572244 22572271 chr3R 22572332 22572356 14 85 3.0 4.5 3.8 2.9 112 chr3R 22572244 intron CG33110 + chr3R 22572300 intron CG33110 + chr3R 22572356 intron CG33110 + chr3R_14_22570001 chr3R_22570001 RAL-897 1830 chr3R 22590778 22590804 chr3R 22590856 22590882 9 77 6.5 4.0 5.2 1.5 104 chr3R 22590778 intron Efa6 + chr3R 22590830 intron Efa6 + chr3R 22590882 intron Efa6 + chr3R_9_22590001 chr3R_22590001 RAL-897 1831 chr3R 22597375 22597403 chr3R 22597452 22597465 9 73 4.5 7.0 5.8 1.3 90 chr3R 22597375 intron Efa6 + chr3R 22597420 intron Efa6 + chr3R 22597465 intron Efa6 + chr3R_9_22595001 chr3R_22595001 RAL-897 1832 chr3R 22755587 22755593 chr3R 22755675 22755680 4 86 9.5 4.0 6.8 0.5 93 chr3R 22755587 intron,intron CG7029 +,Usp12-46 + chr3R 22755634 intron,intron CG7029 +,Usp12-46 + chr3R 22755680 intron,intron CG7029 +,Usp12-46 + chr3R_4_22755001 chr3R_22755001 RAL-897 1833 chr3R 22755594 22755607 chr3R 22755673 22755693 8 82 6.5 3.5 5.0 1.3 99 chr3R 22755594 intron,intron CG7029 +,Usp12-46 + chr3R 22755644 intron,intron CG7029 +,Usp12-46 + chr3R 22755693 intron,intron CG7029 +,Usp12-46 + chr3R_8_22755001 chr3R_22755001 RAL-897 1834 chr3R 22769091 22769109 chr3R 22769167 22769186 7 73 11.0 3.0 7.0 0.9 95 chr3R 22769091 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769138 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769186 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_7_22765001 chr3R_22765001 RAL-897 1835 chr3R 22769110 22769122 chr3R 22769166 22769198 5 71 7.0 2.5 4.8 0.9 88 chr3R 22769110 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769154 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769198 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_5_22765001 chr3R_22765001 RAL-897 1836 chr3R 22794525 22794550 chr3R 22794601 22794626 6 75 4.5 5.5 5.0 1.0 101 chr3R 22794525 intergenic CG7029 + chr3R 22794576 intergenic not near genes chr3R 22794626 intergenic not near genes chr3R_6_22790001 chr3R_22790001 RAL-897 1837 chr3R 22843362 22843375 chr3R 22843442 22843451 9 80 8.5 4.0 6.2 1.2 89 chr3R 22843362 intergenic not near genes chr3R 22843406 intergenic not near genes chr3R 22843451 intergenic not near genes chr3R_9_22840001 chr3R_22840001 RAL-897 1838 chr3R 22843378 22843390 chr3R 22843441 22843470 4 75 6.5 4.0 5.2 0.6 92 chr3R 22843378 intergenic not near genes chr3R 22843424 intergenic not near genes chr3R 22843470 intergenic not near genes chr3R_4_22840001 chr3R_22840001 RAL-897 1839 chr3R 22860151 22860179 chr3R 22860243 22860269 13 91 2.5 1.5 2.0 4.3 118 chr3R 22860151 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860269 intergenic not near genes chr3R_13_22860001 chr3R_22860001 RAL-897 1840 chr3R 22863919 22863931 chr3R 22863997 22864009 7 77 3.5 9.0 6.2 1.0 90 chr3R 22863919 intergenic not near genes chr3R 22863964 intergenic not near genes chr3R 22864009 intergenic not near genes chr3R_7_22860001 chr3R_22860001 RAL-897 1841 chr3R 22873270 22873295 chr3R 22873360 22873386 12 87 4.0 3.5 3.8 2.5 116 chr3R 22873270 intergenic not near genes chr3R 22873328 intergenic not near genes chr3R 22873386 intergenic not near genes chr3R_12_22870001 chr3R_22870001 RAL-897 1842 chr3R 22880605 22880613 chr3R 22880681 22880690 5 77 13.0 11.0 12.0 0.4 85 chr3R 22880605 intergenic not near genes chr3R 22880648 intergenic not near genes chr3R 22880690 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-897 1843 chr3R 22880940 22880952 chr3R 22881078 22881090 4 137 2.5 4.0 3.2 1.0 150 chr3R 22880940 intergenic not near genes chr3R 22881015 intergenic not near genes chr3R 22881090 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-897 1844 chr3R 22881198 22881222 chr3R 22884904 22884908 Doc 4 3700 1.0 2.0 1.5 1.6 3710 chr3R 22881198 intergenic not near genes chr3R 22883053 intergenic not near genes chr3R 22884908 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-897 1845 chr3R 22906637 22906659 chr3R 22906715 22906722 12 74 3.5 3.5 3.5 2.7 85 chr3R 22906637 intron klg + chr3R 22906680 intron klg + chr3R 22906722 intron klg + chr3R_12_22905001 chr3R_22905001 RAL-897 1846 chr3R 22919171 22919190 chr3R 22919254 22919256 12 90 3.5 7.5 5.5 1.8 85 chr3R 22919171 intron klg + chr3R 22919214 intron klg + chr3R 22919256 intron klg + chr3R_12_22915001 chr3R_22915001 RAL-897 1847 chr3R 23064179 23064203 chr3R 23064285 23064306 15 108 5.0 6.0 5.5 2.3 127 chr3R 23064179 exon CG17111 - chr3R 23064242 intron CG17111 - chr3R 23064306 exon CG17111 - chr3R_15_23060001 chr3R_23060001 RAL-897 1848 chr3R 23064880 23064899 chr3R 23064971 23064990 4 91 0.0 4.0 2.0 1.3 110 chr3R 23064880 intron CG17111 - chr3R 23064935 intron CG17111 - chr3R 23064990 intron CG17111 - chr3R_4_23060001 chr3R_23060001 RAL-897 1849 chr3R 23101383 23101411 chr3R 23101475 23101485 10 88 2.0 5.0 3.5 2.2 102 chr3R 23101383 intron CG13830 - chr3R 23101434 intron CG13830 - chr3R 23101485 intron CG13830 - chr3R_10_23100001 chr3R_23100001 RAL-897 1850 chr3R 23197966 23197976 chr3R 23198044 23198055 4 78 4.0 1.5 2.8 1.1 89 chr3R 23197966 exon cnc - chr3R 23198010 intron cnc - chr3R 23198055 intron cnc - chr3R_4_23195001 chr3R_23195001 RAL-897 1851 chr3R 23245987 23245992 chr3R 23246074 23246079 4 87 4.0 4.0 4.0 0.8 92 chr3R 23245987 intron CG4467 - chr3R 23246033 intron CG4467 - chr3R 23246079 intron CG4467 - chr3R_4_23245001 chr3R_23245001 RAL-897 1852 chr3R 23277347 23277372 chr3R 23277437 23277462 7 87 2.5 3.0 2.8 1.8 115 chr3R 23277347 intron orb - chr3R 23277404 intron orb - chr3R 23277462 intron orb - chr3R_7_23275001 chr3R_23275001 RAL-897 1853 chr3R 23326775 23326806 chr3R 23326950 23326979 19 174 3.5 7.0 5.2 3.1 204 chr3R 23326775 intron pnt - chr3R 23326877 intron pnt - chr3R 23326979 intron pnt - chr3R_19_23325001 chr3R_23325001 RAL-897 1854 chr3R 23356998 23357016 chr3R 23357084 23357102 4 86 6.5 3.5 5.0 0.7 104 chr3R 23356998 intron Sec13 + chr3R 23357050 intron Sec13 + chr3R 23357102 intron Sec13 + chr3R_4_23355001 chr3R_23355001 RAL-897 1855 chr3R 23380119 23380123 chr3R 23380222 23380226 6 102 12.0 5.5 8.8 0.6 107 chr3R 23380119 exon CG4393 - chr3R 23380172 intron CG4393 - chr3R 23380226 intron CG4393 - chr3R_6_23380001 chr3R_23380001 RAL-897 1856 chr3R 23380124 23380130 chr3R 23380218 23380233 7 102 8.5 5.0 6.8 0.9 109 chr3R 23380124 exon CG4393 - chr3R 23380178 intron CG4393 - chr3R 23380233 intron CG4393 - chr3R_7_23380001 chr3R_23380001 RAL-897 1857 chr3R 23421986 23422009 chr3R 23422060 23422093 8 79 3.0 5.0 4.0 1.6 107 chr3R 23421986 intron CG4374 - chr3R 23422040 intron CG4374 - chr3R 23422093 intron CG4374 - chr3R_8_23420001 chr3R_23420001 RAL-897 1858 chr3R 23497959 23497968 chr3R 23498043 23498052 5 83 6.5 7.5 7.0 0.6 93 chr3R 23497959 intergenic not near genes chr3R 23498006 intergenic not near genes chr3R 23498052 intergenic not near genes chr3R_5_23495001 chr3R_23495001 RAL-897 1859 chr3R 23536951 23536981 chr3R 23537133 23537162 9 179 2.5 7.5 5.0 1.5 211 chr3R 23536951 intergenic CG10168 -,CG16732 - chr3R 23537056 exon CG10168 - chr3R 23537162 exon CG10168 - chr3R_9_23535001 chr3R_23535001 RAL-897 1860 chr3R 23548077 23548102 chr3R 23548376 23548400 11 300 4.0 7.0 5.5 1.7 323 chr3R 23548077 intergenic not near genes chr3R 23548238 intergenic not near genes chr3R 23548400 intergenic not near genes chr3R_11_23545001 chr3R_23545001 RAL-897 1861 chr3R 23558402 23558429 chr3R 23560183 23560210 Bari1 7 1781 2.5 4.0 3.2 1.7 1808 chr3R 23558402 intron beat-IV + chr3R 23559306 intron beat-IV + chr3R 23560210 intron beat-IV + chr3R_7_23555001 chr3R_23555001 RAL-897 1862 chr3R 23572753 23572781 chr3R 23572872 23572895 8 116 2.0 3.0 2.5 2.3 142 chr3R 23572753 intron beat-IV + chr3R 23572824 intron beat-IV + chr3R 23572895 intron beat-IV + chr3R_8_23570001 chr3R_23570001 RAL-897 1863 chr3R 23626324 23626354 chr3R 23626422 23626450 17 98 6.5 9.0 7.8 1.9 126 chr3R 23626324 intron CG31145 - chr3R 23626387 intron CG31145 - chr3R 23626450 intron CG31145 - chr3R_17_23625001 chr3R_23625001 RAL-897 1864 chr3R 23629441 23629475 chr3R 23629517 23629551 29 74 8.0 4.0 6.0 4.1 110 chr3R 23629441 intron CG31145 - chr3R 23629496 intron CG31145 - chr3R 23629551 intron CG31145 - chr3R_29_23625001 chr3R_23625001 RAL-897 1865 chr3R 3586633 3586638 chr3R 23642154 23642159 4 20055521 16.5 17.5 17.0 0.2 20055526 chr3R 3586633 intron Parp - chr3R 13614396 intergenic not near genes chr3R 23642159 intron CG31145 - chr3R_4_13610001 chr3R_13610001 RAL-897 1866 chr3R 23944913 23944934 chr3R 23944998 23945019 7 84 4.0 3.0 3.5 1.6 106 chr3R 23944913 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945019 exon CG12268 - chr3R_7_23940001 chr3R_23940001 RAL-897 1867 chr3R 23949041 23949064 chr3R 23949118 23949141 9 76 5.0 2.0 3.5 2.0 100 chr3R 23949041 intergenic not near genes chr3R 23949091 intergenic not near genes chr3R 23949141 intergenic not near genes chr3R_9_23945001 chr3R_23945001 RAL-897 1868 chr3R 24011672 24011678 chr3R 24011754 24011761 4 82 1.0 6.5 3.8 0.8 89 chr3R 24011672 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011761 intron KrT95D - chr3R_4_24010001 chr3R_24010001 RAL-897 1869 chr3R 24015431 24015441 chr3R 24015508 24015518 5 77 0.0 6.5 3.2 1.2 87 chr3R 24015431 intron KrT95D - chr3R 24015474 intron KrT95D - chr3R 24015518 intron KrT95D - chr3R_5_24015001 chr3R_24015001 RAL-897 1870 chr3R 24072101 24072115 chr3R 24072522 24072535 jockey 4 424 6.5 1.0 3.8 0.8 434 chr3R 24072101 intron 4EHP - chr3R 24072318 intron 4EHP - chr3R 24072535 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-897 1871 chr3R 24076915 24076948 chr3R 24078381 24078415 hobo 17 1465 7.5 7.0 7.2 2.1 1500 chr3R 24076915 intron 4EHP - chr3R 24077665 intron 4EHP - chr3R 24078415 intron 4EHP - chr3R_17_24075001 chr3R_24075001 RAL-897 1872 chr3R 24100461 24100481 chr3R 24100556 24100572 5 94 1.0 1.0 1.0 2.5 111 chr3R 24100461 intron 4EHP - chr3R 24100516 intron 4EHP - chr3R 24100572 intron 4EHP - chr3R_5_24100001 chr3R_24100001 RAL-897 1873 chr3R 24207219 24207245 chr3R 24212288 24212321 flea 16 5074 8.0 7.5 7.8 1.8 5102 chr3R 24207219 intron twin - chr3R 24209770 intron twin - chr3R 24212321 intron twin - chr3R_16_24205001 chr3R_24205001 RAL-897 1874 chr3R 24441626 24441648 chr3R 24441903 24441930 5 280 4.0 3.5 3.8 1.0 304 chr3R 24441626 intron nAChRalpha1 - chr3R 24441778 intron nAChRalpha1 - chr3R 24441930 intron nAChRalpha1 - chr3R_5_24440001 chr3R_24440001 RAL-897 1875 chr3R 24493278 24493292 chr3R 24493507 24493521 BS 5 229 4.5 3.5 4.0 1.0 243 chr3R 24493278 intergenic not near genes chr3R 24493400 intergenic not near genes chr3R 24493521 intergenic not near genes chr3R_5_24490001 chr3R_24490001 RAL-897 1876 chr3R 24493302 24493310 chr3R 24493505 24493539 BS 7 222 1.5 3.5 2.5 2.0 237 chr3R 24493302 intergenic not near genes chr3R 24493420 intergenic not near genes chr3R 24493539 intergenic not near genes chr3R_7_24490001 chr3R_24490001 RAL-897 1877 chr3R 24527801 24527834 chr3R 24527892 24527925 12 91 1.0 3.0 2.0 4.0 124 chr3R 24527801 intergenic CG6607 +,CG13618 + chr3R 24527863 intergenic CG6607 +,CG13618 + chr3R 24527925 intergenic CG6607 +,CG13618 + chr3R_12_24525001 chr3R_24525001 RAL-897 1878 chr3R 24667607 24667622 chr3R 24667684 24667699 6 77 1.5 0.0 0.8 3.3 92 chr3R 24667607 intron slo + chr3R 24667653 intron slo + chr3R 24667699 intron slo + chr3R_6_24665001 chr3R_24665001 RAL-897 1879 chr3R 24671221 24671234 chr3R 24671298 24671310 5 77 9.5 1.0 5.2 0.8 89 chr3R 24671221 intron slo + chr3R 24671266 intron slo + chr3R 24671310 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-897 1880 chr3R 24730090 24730120 chr3R 24732467 24732480 Doc 12 2371 4.5 2.5 3.5 2.7 2390 chr3R 24730090 intron tok + chr3R 24731285 intron tok + chr3R 24732480 intron tok + chr3R_12_24730001 chr3R_24730001 RAL-897 1881 chr3R 24733873 24733892 chr3R 24734019 24734047 15 150 1.0 4.0 2.5 4.3 174 chr3R 24733873 intron tok + chr3R 24733960 intron tok + chr3R 24734047 intron tok + chr3R_15_24730001 chr3R_24730001 RAL-897 1882 chr3R 24789988 24790004 chr3R 24790133 24790149 4 144 3.5 8.0 5.8 0.6 161 chr3R 24789988 intron,5` UTR Ets96B +,CG13634 - chr3R 24790068 intron,5` UTR Ets96B +,CG13634 - chr3R 24790149 intron Ets96B + chr3R_4_24790001 chr3R_24790001 RAL-897 1883 chr3R 24834271 24834295 chr3R 24834351 24834375 10 79 3.0 5.0 4.0 2.0 104 chr3R 24834271 intron sosie + chr3R 24834323 5` UTR sosie + chr3R 24834375 5` UTR sosie + chr3R_10_24830001 chr3R_24830001 RAL-897 1884 chr3R 24912482 24912509 chr3R 24912563 24912591 8 80 5.0 2.5 3.8 1.7 109 chr3R 24912482 intergenic not near genes chr3R 24912536 intergenic CR44267 + chr3R 24912591 intergenic CR44267 + chr3R_8_24910001 chr3R_24910001 RAL-897 1885 chr3R 24927128 24927164 chr3R 24931918 24931940 Doc 16 4789 1.0 2.5 1.8 5.7 4812 chr3R 24927128 intergenic Trf4-2 + chr3R 24929534 intergenic not near genes chr3R 24931940 intergenic CG11771 + chr3R_16_24925001 chr3R_24925001 RAL-897 1886 chr3R 24973955 24973984 chr3R 24974029 24974060 19 75 8.0 9.5 8.8 1.9 105 chr3R 24973955 intergenic not near genes chr3R 24974008 intergenic not near genes chr3R 24974060 intergenic not near genes chr3R_19_24970001 chr3R_24970001 RAL-897 1887 chr3R 25004899 25004922 chr3R 25004982 25005005 11 82 0.5 6.5 3.5 2.4 106 chr3R 25004899 intron tnc + chr3R 25004952 intron tnc + chr3R 25005005 intron tnc + chr3R_11_25000001 chr3R_25000001 RAL-897 1888 chr3R 25027541 25027569 chr3R 25027750 25027781 16 212 7.0 4.5 5.8 2.4 240 chr3R 25027541 intron Hr96 + chr3R 25027661 intron Hr96 + chr3R 25027781 intron Hr96 + chr3R_16_25025001 chr3R_25025001 RAL-897 1889 chr3R 25166367 25166392 chr3R 25166443 25166468 5 76 2.0 2.5 2.2 1.6 101 chr3R 25166367 intergenic not near genes chr3R 25166418 intergenic not near genes chr3R 25166468 intergenic not near genes chr3R_5_25165001 chr3R_25165001 RAL-897 1890 chr3R 25235698 25235716 chr3R 25235788 25235806 7 89 3.5 1.0 2.2 2.2 108 chr3R 25235698 intergenic CG10420 - chr3R 25235752 intergenic CG10420 - chr3R 25235806 intergenic CG10420 - chr3R_7_25235001 chr3R_25235001 RAL-897 1891 chr3R 25520987 25521000 chr3R 25521086 25521099 4 99 5.0 5.5 5.2 0.6 112 chr3R 25520987 intron msi + chr3R 25521043 intron msi + chr3R 25521099 intron msi + chr3R_4_25520001 chr3R_25520001 RAL-897 1892 chr3R 25576837 25576870 chr3R 25576936 25576952 15 96 1.0 6.5 3.8 3.1 115 chr3R 25576837 intron msi + chr3R 25576894 intron msi + chr3R 25576952 intron msi + chr3R_15_25575001 chr3R_25575001 RAL-897 1893 chr3R 25588070 25588106 chr3R 25588148 25588182 14 75 3.0 7.0 5.0 2.3 112 chr3R 25588070 intron msi + chr3R 25588126 intron msi + chr3R 25588182 intron msi + chr3R_14_25585001 chr3R_25585001 RAL-897 1894 chr3R 25652314 25652342 chr3R 25652391 25652416 5 76 4.5 1.0 2.8 1.3 102 chr3R 25652314 intergenic not near genes chr3R 25652365 intergenic not near genes chr3R 25652416 intergenic not near genes chr3R_5_25650001 chr3R_25650001 RAL-897 1895 chr3R 25709610 25709646 chr3R 25709692 25709712 5 78 0.0 2.0 1.0 2.5 102 chr3R 25709610 intron LpR2 - chr3R 25709661 intron LpR2 - chr3R 25709712 intron LpR2 - chr3R_5_25705001 chr3R_25705001 RAL-897 1896 chr3R 25761678 25761713 chr3R 25761756 25761762 22 69 4.5 3.5 4.0 4.4 84 chr3R 25761678 5` UTR LpR1 - chr3R 25761720 5` UTR LpR1 - chr3R 25761762 5` UTR LpR1 - chr3R_22_25760001 chr3R_25760001 RAL-897 1897 chr3R 25832693 25832719 chr3R 25841874 25841901 roo 11 9180 7.0 6.5 6.8 1.4 9208 chr3R 25832693 exon alpha4GT2 + chr3R 25837297 intron alpha4GT2 + chr3R 25841901 exon alpha4GT2 + chr3R_11_25835001 chr3R_25835001 RAL-897 1898 chr3R 25905907 25905938 chr3R 25906099 25906133 15 192 4.5 3.5 4.0 3.0 226 chr3R 25905907 intron CR43259 - chr3R 25906020 intron CR43259 - chr3R 25906133 3` UTR CR43259 - chr3R_15_25905001 chr3R_25905001 RAL-897 1899 chr3R 25927508 25927536 chr3R 25927590 25927618 8 82 2.0 2.0 2.0 2.7 110 chr3R 25927508 intron CCAP-R - chr3R 25927563 intron CCAP-R - chr3R 25927618 intron CCAP-R - chr3R_8_25925001 chr3R_25925001 RAL-897 1900 chr3R 25962051 25962080 chr3R 25962147 25962176 13 96 1.5 7.5 4.5 2.4 125 chr3R 25962051 intron boss + chr3R 25962114 intron boss + chr3R 25962176 intron boss + chr3R_13_25960001 chr3R_25960001 RAL-897 1901 chr3R 26121954 26121981 chr3R 26122051 26122065 9 93 0.0 9.0 4.5 1.6 111 chr3R 26121954 intron CG31324 + chr3R 26122010 intron CG31324 + chr3R 26122065 intron CG31324 + chr3R_9_26120001 chr3R_26120001 RAL-897 1902 chr3R 26153837 26153857 chr3R 26153970 26153990 5 133 3.0 4.5 3.8 1.0 153 chr3R 26153837 intergenic not near genes chr3R 26153914 intergenic not near genes chr3R 26153990 intergenic not near genes chr3R_5_26150001 chr3R_26150001 RAL-897 1903 chr3R 26292104 26292140 chr3R 26292184 26292220 9 79 1.5 3.0 2.2 2.8 116 chr3R 26292104 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292220 intergenic not near genes chr3R_9_26290001 chr3R_26290001 RAL-897 1904 chr3R 26296404 26296436 chr3R 26296483 26296492 8 75 3.0 6.0 4.5 1.5 88 chr3R 26296404 intergenic not near genes chr3R 26296448 intergenic not near genes chr3R 26296492 intergenic not near genes chr3R_8_26295001 chr3R_26295001 RAL-897 1905 chr3R 26307087 26307097 chr3R 26307284 26307293 4 196 4.0 5.5 4.8 0.7 206 chr3R 26307087 intergenic not near genes chr3R 26307190 intergenic not near genes chr3R 26307293 intergenic not near genes chr3R_4_26305001 chr3R_26305001 RAL-897 1906 chr3R 26370340 26370359 chr3R 26370422 26370442 7 82 0.5 3.0 1.8 2.5 102 chr3R 26370340 intergenic not near genes chr3R 26370391 intergenic not near genes chr3R 26370442 intergenic not near genes chr3R_7_26370001 chr3R_26370001 RAL-897 1907 chr3R 26376326 26376335 chr3R 26385486 26385494 roo 5 9159 9.5 1.0 5.2 0.8 9168 chr3R 26376326 intergenic not near genes chr3R 26380910 intergenic not near genes chr3R 26385494 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-897 1908 chr3R 26376338 26376351 chr3R 26385484 26385508 roo 5 9152 5.5 1.0 3.2 1.2 9170 chr3R 26376338 intergenic not near genes chr3R 26380923 intergenic not near genes chr3R 26385508 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-897 1909 chr3R 26391775 26391806 chr3R 26392016 26392032 14 236 11.0 4.0 7.5 1.6 257 chr3R 26391775 intergenic not near genes chr3R 26391904 intergenic not near genes chr3R 26392032 intergenic not near genes chr3R_14_26390001 chr3R_26390001 RAL-897 1910 chr3R 26558328 26558358 chr3R 26565639 26565670 Stalker4 12 7303 3.0 5.5 4.2 2.3 7342 chr3R 26558328 intron scrib + chr3R 26561999 intron scrib + chr3R 26565670 intron scrib + chr3R_12_26560001 chr3R_26560001 RAL-897 1911 chr3R 26571600 26571617 chr3R 26571668 26571694 8 76 8.5 4.5 6.5 1.1 94 chr3R 26571600 intron scrib + chr3R 26571647 intron scrib + chr3R 26571694 intron scrib + chr3R_8_26570001 chr3R_26570001 RAL-897 1912 chr3R 26642731 26642760 chr3R 26643124 26643154 jockey 5 394 4.5 2.5 3.5 1.1 423 chr3R 26642731 intergenic not near genes chr3R 26642942 intergenic not near genes chr3R 26643154 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-897 1913 chr3R 26770240 26770273 chr3R 26770317 26770350 9 77 3.5 5.0 4.2 1.7 110 chr3R 26770240 intergenic CR45563 + chr3R 26770295 intergenic CR45563 + chr3R 26770350 intergenic not near genes chr3R_9_26770001 chr3R_26770001 RAL-897 1914 chr3R 26810553 26810586 chr3R 26811038 26811069 roo 8 482 6.5 3.5 5.0 1.3 516 chr3R 26810553 intron Tl + chr3R 26810811 intron Tl + chr3R 26811069 intron Tl + chr3R_8_26810001 chr3R_26810001 RAL-897 1915 chr3R 26845573 26845606 chr3R 26845653 26845655 27 78 3.5 9.0 6.2 3.8 82 chr3R 26845573 intron Lerp - chr3R 26845614 intron Lerp - chr3R 26845655 intron Lerp - chr3R_27_26845001 chr3R_26845001 RAL-897 1916 chr3R 26922820 26922838 chr3R 26922978 26923010 9 168 2.5 5.0 3.8 1.9 190 chr3R 26922820 intron sda + chr3R 26922915 intron sda + chr3R 26923010 intron sda + chr3R_9_26920001 chr3R_26920001 RAL-897 1917 chr3R 26960015 26960021 chr3R 26964170 26964181 5 4149 36.5 28.0 32.2 0.2 4166 chr3R 26960015 intergenic not near genes chr3R 26962098 3` UTR Tsp97E - chr3R 26964181 exon Tsp97E - chr3R_5_26960001 chr3R_26960001 RAL-897 1918 chr3R 27027687 27027720 chr3R 27027769 27027796 5 81 0.5 4.0 2.2 1.6 109 chr3R 27027687 intron RYa-R + chr3R 27027742 intron RYa-R + chr3R 27027796 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-897 1919 chr3R 27028722 27028754 chr3R 27028801 27028833 8 79 2.5 3.0 2.8 2.1 111 chr3R 27028722 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028833 intron RYa-R + chr3R_8_27025001 chr3R_27025001 RAL-897 1920 chr3R 27041816 27041847 chr3R 27041905 27041934 20 87 5.0 7.0 6.0 2.9 118 chr3R 27041816 intron RYa-R + chr3R 27041875 intron RYa-R + chr3R 27041934 intron RYa-R + chr3R_20_27040001 chr3R_27040001 RAL-897 1921 chr3R 27140515 27140548 chr3R 27148124 27148158 412 17 7609 6.5 5.0 5.8 2.5 7643 chr3R 27140515 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_17_27140001 chr3R_27140001 RAL-897 1922 chr3R 27196625 27196634 chr3R 27196735 27196737 6 116 7.5 2.0 4.8 1.0 112 chr3R 27196625 intergenic not near genes chr3R 27196681 intergenic not near genes chr3R 27196737 intergenic not near genes chr3R_6_27195001 chr3R_27195001 RAL-897 1923 chr3R 27274693 27274728 chr3R 27274781 27274816 11 82 1.0 7.0 4.0 2.2 123 chr3R 27274693 intergenic CG5938 +,CG5934 + chr3R 27274754 intergenic CG5938 +,CG5934 + chr3R 27274816 5` UTR CG5938 + chr3R_11_27270001 chr3R_27270001 RAL-897 1924 chr3R 27329478 27329493 chr3R 27329554 27329570 4 77 4.5 3.0 3.8 0.8 92 chr3R 27329478 intergenic CG3330 - chr3R 27329524 intergenic CG3330 - chr3R 27329570 intergenic CG3330 - chr3R_4_27325001 chr3R_27325001 RAL-897 1925 chr3R 27342796 27342826 chr3R 27351372 27351407 Tirant 15 8580 1.5 5.5 3.5 3.3 8611 chr3R 27342796 intron CG42534 + chr3R 27347102 intron CG42534 + chr3R 27351407 intron CG42534 + chr3R_15_27345001 chr3R_27345001 RAL-897 1926 chr3R 27496593 27496627 chr3R 27496698 27496731 7 104 2.5 5.5 4.0 1.4 138 chr3R 27496593 intergenic not near genes chr3R 27496662 intergenic not near genes chr3R 27496731 intergenic not near genes chr3R_7_27495001 chr3R_27495001 RAL-897 1927 chr3R 27619418 27619427 chr3R 27619847 27619856 4 429 8.5 6.0 7.2 0.5 438 chr3R 27619418 intron Tusp + chr3R 27619637 intron Tusp + chr3R 27619856 intron Tusp + chr3R_4_27615001 chr3R_27615001 RAL-897 1928 chr3R 27619428 27619446 chr3R 27619845 27619875 7 425 3.5 5.5 4.5 1.3 447 chr3R 27619428 intron Tusp + chr3R 27619652 intron Tusp + chr3R 27619875 intron Tusp + chr3R_7_27615001 chr3R_27615001 RAL-897 1929 chr3R 27627090 27627119 chr3R 27627191 27627221 10 99 4.5 11.0 7.8 1.1 131 chr3R 27627090 intron Tusp + chr3R 27627156 intron Tusp + chr3R 27627221 intron Tusp + chr3R_10_27625001 chr3R_27625001 RAL-897 1930 chr3R 27644266 27644283 chr3R 27644344 27644375 8 89 1.0 1.0 1.0 4.0 109 chr3R 27644266 intron tau - chr3R 27644320 intron tau - chr3R 27644375 intron tau - chr3R_8_27640001 chr3R_27640001 RAL-897 1931 chr3R 27705358 27705392 chr3R 27705437 27705472 14 78 5.0 6.0 5.5 2.2 114 chr3R 27705358 exon CG12428 - chr3R 27705415 intron CG12428 - chr3R 27705472 exon CG12428 - chr3R_14_27705001 chr3R_27705001 RAL-897 1932 chr3R 27718578 27718598 chr3R 27718655 27718677 7 79 3.5 3.0 3.2 1.7 99 chr3R 27718578 intergenic not near genes chr3R 27718628 intergenic not near genes chr3R 27718677 intergenic not near genes chr3R_7_27715001 chr3R_27715001 RAL-897 1933 chr3R 27779268 27779287 chr3R 27779348 27779367 7 80 5.5 12.5 9.0 0.7 99 chr3R 27779268 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779367 intron CG34353 - chr3R_7_27775001 chr3R_27775001 RAL-897 1934 chr3R 27799939 27799964 chr3R 27800021 27800046 11 82 3.5 2.5 3.0 2.8 107 chr3R 27799939 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800046 intron CG34353 - chr3R_11_27795001 chr3R_27795001 RAL-897 1935 chr3R 27840252 27840257 chr3R 27840374 27840377 4 122 0.0 0.5 0.2 3.3 125 chr3R 27840252 intron CG34353 - chr3R 27840314 intron CG34353 - chr3R 27840377 intron CG34353 - chr3R_4_27840001 chr3R_27840001 RAL-897 1936 chr3R 27856764 27856787 chr3R 27858247 27858270 hopper2 9 1482 7.0 5.0 6.0 1.3 1506 chr3R 27856764 intron CG34353 - chr3R 27857517 intron CG34353 - chr3R 27858270 intron CG34353 - chr3R_9_27855001 chr3R_27855001 RAL-897 1937 chr3R 27862956 27862984 chr3R 27868258 27868285 Transpac 10 5301 4.5 5.5 5.0 1.7 5329 chr3R 27862956 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868285 intron CG34353 - chr3R_10_27865001 chr3R_27865001 RAL-897 1938 chr3R 27875699 27875732 chr3R 27882754 27882787 297 20 7055 6.5 4.0 5.2 3.2 7088 chr3R 27875699 intron CG34353 - chr3R 27879243 intron CG34353 - chr3R 27882787 intron CG34353 - chr3R_20_27875001 chr3R_27875001 RAL-897 1939 chr3R 27982387 27982407 chr3R 27982465 27982500 9 89 7.0 5.0 6.0 1.3 113 chr3R 27982387 intron betaTub97EF - chr3R 27982444 intron betaTub97EF - chr3R 27982500 intron betaTub97EF - chr3R_9_27980001 chr3R_27980001 RAL-897 1940 chr3R 28054454 28054462 chr3R 28054530 28054538 7 76 7.0 7.5 7.2 0.9 84 chr3R 28054454 intron CG34362 + chr3R 28054496 intron CG34362 + chr3R 28054538 intron CG34362 + chr3R_7_28050001 chr3R_28050001 RAL-897 1941 chr3R 28068493 28068532 chr3R 28073935 28073974 I-element 15 5440 2.0 6.5 4.2 2.9 5481 chr3R 28068493 intron CG34362 + chr3R 28071234 intron CG34362 + chr3R 28073974 intron CG34362 + chr3R_15_28070001 chr3R_28070001 RAL-897 1942 chr3R 28103330 28103355 chr3R 28103423 28103448 12 92 4.0 6.0 5.0 2.0 118 chr3R 28103330 intergenic not near genes chr3R 28103389 intergenic not near genes chr3R 28103448 intergenic not near genes chr3R_12_28100001 chr3R_28100001 RAL-897 1943 chr3R 28173668 28173701 chr3R 28181098 28181131 mdg1 8 7430 1.5 2.5 2.0 2.7 7463 chr3R 28173668 intron CG34354 + chr3R 28177400 intron CG34354 + chr3R 28181131 intron CG34354 + chr3R_8_28175001 chr3R_28175001 RAL-897 1944 chr3R 28227635 28227668 chr3R 28227744 28227777 11 109 1.0 6.5 3.8 2.3 142 chr3R 28227635 intron CG34354 + chr3R 28227706 intron CG34354 + chr3R 28227777 intron CG34354 + chr3R_11_28225001 chr3R_28225001 RAL-897 1945 chr3R 28253347 28253369 chr3R 28255857 28255879 jockey 15 2510 4.0 7.5 5.8 2.2 2532 chr3R 28253347 intergenic not near genes chr3R 28254613 intergenic not near genes chr3R 28255879 intergenic not near genes chr3R_15_28250001 chr3R_28250001 RAL-897 1946 chr3R 28302107 28302134 chr3R 28302546 28302573 jockey 10 438 4.0 6.0 5.0 1.7 466 chr3R 28302107 intergenic not near genes chr3R 28302340 intergenic not near genes chr3R 28302573 intergenic not near genes chr3R_10_28300001 chr3R_28300001 RAL-897 1947 chr3R 28304628 28304664 chr3R 28304715 28304751 8 85 2.5 1.5 2.0 2.7 123 chr3R 28304628 intergenic CG12516 - chr3R 28304690 intergenic CG12516 - chr3R 28304751 intergenic CG12516 - chr3R_8_28300001 chr3R_28300001 RAL-897 1948 chr3R 28331498 28331521 chr3R 28331585 28331608 6 88 3.0 1.0 2.0 2.0 110 chr3R 28331498 intron larp - chr3R 28331553 intron larp - chr3R 28331608 intron larp - chr3R_6_28330001 chr3R_28330001 RAL-897 1949 chr3R 28337694 28337726 chr3R 28337781 28337813 11 85 3.0 2.5 2.8 2.9 119 chr3R 28337694 intron Gfat2 - chr3R 28337754 intron Gfat2 - chr3R 28337813 intron Gfat2 - chr3R_11_28335001 chr3R_28335001 RAL-897 1950 chr3R 28344089 28344097 chr3R 28344144 28344156 5 67 5.0 7.5 6.2 0.7 67 chr3R 28344089 exon Moca-cyp + chr3R 28344122 exon Moca-cyp + chr3R 28344156 exon Moca-cyp + chr3R_5_28340001 chr3R_28340001 RAL-897 1951 chr3R 28424253 28424278 chr3R 28424332 28424344 12 77 2.5 6.5 4.5 2.2 91 chr3R 28424253 intron beat-VI + chr3R 28424298 intron beat-VI + chr3R 28424344 intron beat-VI + chr3R_12_28420001 chr3R_28420001 RAL-897 1952 chr3R 28425251 28425270 chr3R 28425330 28425349 10 77 6.0 7.5 6.8 1.3 98 chr3R 28425251 intron beat-VI + chr3R 28425300 intron beat-VI + chr3R 28425349 intron beat-VI + chr3R_10_28425001 chr3R_28425001 RAL-897 1953 chr3R 28429448 28429633 chr3R 28429533 28429710 22 78 6.0 7.5 6.8 2.8 262 chr3R 28429448 intron beat-VI + chr3R 28429579 intron beat-VI + chr3R 28429710 intron beat-VI + chr3R_22_28425001 chr3R_28425001 RAL-897 1954 chr3R 28478488 28478524 chr3R 28478564 28478600 13 75 5.0 5.0 5.0 2.2 112 chr3R 28478488 intergenic not near genes chr3R 28478544 intergenic not near genes chr3R 28478600 intergenic not near genes chr3R_13_28475001 chr3R_28475001 RAL-897 1955 chr3R 28479144 28479167 chr3R 28479241 28479265 10 98 2.5 3.5 3.0 2.5 121 chr3R 28479144 intergenic not near genes chr3R 28479204 intergenic not near genes chr3R 28479265 intergenic not near genes chr3R_10_28475001 chr3R_28475001 RAL-897 1956 chr3R 28673624 28673648 chr3R 28673710 28673734 4 84 3.0 6.0 4.5 0.7 110 chr3R 28673624 intergenic not near genes chr3R 28673679 intergenic not near genes chr3R 28673734 intergenic not near genes chr3R_4_28670001 chr3R_28670001 RAL-897 1957 chr3R 28678596 28678615 chr3R 28678705 28678724 6 108 2.0 13.0 7.5 0.7 128 chr3R 28678596 intron CG9990 + chr3R 28678660 intron CG9990 + chr3R 28678724 intron CG9990 + chr3R_6_28675001 chr3R_28675001 RAL-897 1958 chr3R 28758286 28758305 chr3R 28763903 28763922 roo 7 5617 4.0 0.0 2.0 2.3 5636 chr3R 28758286 intergenic aqrs - chr3R 28761104 intergenic not near genes chr3R 28763922 intergenic not near genes chr3R_7_28760001 chr3R_28760001 RAL-897 1959 chr3R 28792870 28792904 chr3R 28797965 28797995 jockey 21 5091 6.5 6.0 6.2 2.9 5125 chr3R 28792870 intergenic not near genes chr3R 28795432 intergenic not near genes chr3R 28797995 intergenic not near genes chr3R_21_28795001 chr3R_28795001 RAL-897 1960 chr3R 28800268 28800296 chr3R 28800347 28800375 8 77 3.0 0.5 1.8 2.9 107 chr3R 28800268 intergenic not near genes chr3R 28800322 intergenic not near genes chr3R 28800375 intergenic not near genes chr3R_8_28800001 chr3R_28800001 RAL-897 1961 chr3R 28823212 28823225 chr3R 28823287 28823302 5 76 10.0 8.0 9.0 0.5 90 chr3R 28823212 exon CG1647 + chr3R 28823257 exon CG1647 + chr3R 28823302 exon CG1647 + chr3R_5_28820001 chr3R_28820001 RAL-897 1962 chr3R 28823226 28823238 chr3R 28823283 28823315 13 71 7.5 7.0 7.2 1.6 89 chr3R 28823226 exon CG1647 + chr3R 28823270 exon CG1647 + chr3R 28823315 exon CG1647 + chr3R_13_28820001 chr3R_28820001 RAL-897 1963 chr3R 21907534 21907536 chr3R 28831801 28831803 57 6924266 31.5 30.0 30.8 1.8 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_57_25365001 chr3R_25365001 RAL-897 1964 chr3R 28947972 28947998 chr3R 28948084 28948110 10 111 2.0 3.0 2.5 2.9 138 chr3R 28947972 intron CG14521 - chr3R 28948041 intron CG14521 - chr3R 28948110 intron CG14521 - chr3R_10_28945001 chr3R_28945001 RAL-897 1965 chr3R 28955073 28955091 chr3R 28955434 28955452 11 361 5.5 4.5 5.0 1.8 379 chr3R 28955073 intron CG14521 - chr3R 28955262 intron CG14521 - chr3R 28955452 intron CG14521 - chr3R_11_28955001 chr3R_28955001 RAL-897 1966 chr3R 28989007 28989017 chr3R 28989086 28989096 4 78 0.0 1.0 0.5 2.7 89 chr3R 28989007 intergenic not near genes chr3R 28989052 intergenic not near genes chr3R 28989096 intergenic not near genes chr3R_4_28985001 chr3R_28985001 RAL-897 1967 chr3R 21907534 21907536 chr3R 29013340 29013340 8 7105806 31.5 15.0 23.2 0.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_8_25460001 chr3R_25460001 RAL-897 1968 chr3R 29032746 29032775 chr3R 29032821 29032852 9 77 3.0 3.5 3.2 2.1 106 chr3R 29032746 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032799 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032852 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_9_29030001 chr3R_29030001 RAL-897 1969 chr3R 29049188 29049196 chr3R 29049263 29049277 4 79 1.5 2.5 2.0 1.3 89 chr3R 29049188 intergenic Pkc98E +,CG11837 + chr3R 29049232 intergenic Pkc98E +,CG11837 + chr3R 29049277 intergenic Pkc98E +,CG11837 + chr3R_4_29045001 chr3R_29045001 RAL-897 1970 chr3R 29079379 29079411 chr3R 29080751 29080783 NOF 15 1372 5.0 5.5 5.2 2.4 1404 chr3R 29079379 intron CG11873 + chr3R 29080081 intron CG11873 + chr3R 29080783 intron CG11873 + chr3R_15_29080001 chr3R_29080001 RAL-897 1971 chr3R 29128513 29128519 chr3R 29128576 29128609 4 83 0.0 0.5 0.2 3.3 96 chr3R 29128513 intergenic dgt6 -,CG11880 + chr3R 29128561 intergenic dgt6 -,CG11880 + chr3R 29128609 3` UTR dgt6 - chr3R_4_29125001 chr3R_29125001 RAL-897 1972 chr3R 29187020 29187044 chr3R 29187133 29187157 9 112 3.5 4.0 3.8 1.9 137 chr3R 29187020 intron CG14509 - chr3R 29187088 intron CG14509 - chr3R 29187157 intron CG14509 - chr3R_9_29185001 chr3R_29185001 RAL-897 1973 chr3R 29230827 29230859 chr3R 29230902 29230924 5 71 2.5 7.5 5.0 0.8 97 chr3R 29230827 intron CG15817 + chr3R 29230876 intron CG15817 + chr3R 29230924 intron CG15817 + chr3R_5_29230001 chr3R_29230001 RAL-897 1974 chr3R 29237258 29237283 chr3R 29239275 29239301 17 2018 19.5 8.5 14.0 1.1 2043 chr3R 29237258 exon CG11951 - chr3R 29238280 intron CG11951 - chr3R 29239301 exon CG31427 - chr3R_17_29235001 chr3R_29235001 RAL-897 1975 chr3R 29264194 29264210 chr3R 29264296 29264312 7 102 1.5 3.5 2.5 2.0 118 chr3R 29264194 intergenic not near genes chr3R 29264253 intergenic not near genes chr3R 29264312 intergenic not near genes chr3R_7_29260001 chr3R_29260001 RAL-897 1976 chr3R 29319825 29319860 chr3R 29320144 29320171 jockey 6 313 0.5 3.5 2.0 2.0 346 chr3R 29319825 intergenic Cnx99A - chr3R 29319998 intergenic Cnx99A - chr3R 29320171 intergenic not near genes chr3R_6_29320001 chr3R_29320001 RAL-897 1977 chr3R 29332347 29332381 chr3R 29332434 29332458 7 85 1.0 4.0 2.5 2.0 111 chr3R 29332347 intergenic not near genes chr3R 29332402 intergenic not near genes chr3R 29332458 intergenic not near genes chr3R_7_29330001 chr3R_29330001 RAL-897 1978 chr3R 29375986 29376230 chr3R 29376067 29376306 6 81 0.0 2.0 1.0 3.0 320 chr3R 29375986 intergenic not near genes chr3R 29376146 intergenic not near genes chr3R 29376306 intergenic not near genes chr3R_6_29375001 chr3R_29375001 RAL-897 1979 chr3R 29406620 29406645 chr3R 29407899 29407929 jockey 11 1283 5.0 4.5 4.8 1.9 1309 chr3R 29406620 intron Ptp99A + chr3R 29407274 intron Ptp99A + chr3R 29407929 intron Ptp99A + chr3R_11_29405001 chr3R_29405001 RAL-897 1980 chr3R 29449362 29449388 chr3R 29449440 29449463 9 76 1.0 3.5 2.2 2.8 101 chr3R 29449362 intron Ptp99A + chr3R 29449412 intron Ptp99A + chr3R 29449463 intron Ptp99A + chr3R_9_29445001 chr3R_29445001 RAL-897 1981 chr3R 29452157 29452184 chr3R 29452230 29452261 12 73 4.0 2.5 3.2 2.9 104 chr3R 29452157 intron Ptp99A + chr3R 29452209 intron Ptp99A + chr3R 29452261 intron Ptp99A + chr3R_12_29450001 chr3R_29450001 RAL-897 1982 chr3R 29472012 29472033 chr3R 29472105 29472126 6 92 4.5 6.5 5.5 0.9 114 chr3R 29472012 intron Ptp99A + chr3R 29472069 intron Ptp99A + chr3R 29472126 intron Ptp99A + chr3R_6_29470001 chr3R_29470001 RAL-897 1983 chr3R 29494391 29494424 chr3R 29494621 29494655 14 230 2.5 5.5 4.0 2.8 264 chr3R 29494391 intergenic Diedel +,CG2010 + chr3R 29494523 intergenic Diedel +,CG2010 + chr3R 29494655 intergenic CG2010 +,Diedel + chr3R_14_29490001 chr3R_29490001 RAL-897 1984 chr3R 29539431 29539461 chr3R 29539507 29539536 13 75 2.0 0.0 1.0 6.5 105 chr3R 29539431 intergenic not near genes chr3R 29539484 intergenic not near genes chr3R 29539536 intergenic not near genes chr3R_13_29535001 chr3R_29535001 RAL-897 1985 chr3R 29590374 29590404 chr3R 29590467 29590497 17 92 2.5 6.0 4.2 3.3 123 chr3R 29590374 intron CG31041 - chr3R 29590436 intron CG31041 - chr3R 29590497 intron CG31041 - chr3R_17_29590001 chr3R_29590001 RAL-897 1986 chr3R 29627304 29627312 chr3R 29627698 29627722 5 404 3.0 4.0 3.5 1.1 418 chr3R 29627304 intergenic not near genes chr3R 29627513 intergenic not near genes chr3R 29627722 intergenic not near genes chr3R_5_29625001 chr3R_29625001 RAL-897 1987 chr3R 29738263 29738270 chr3R 29739730 29739737 hobo 4 1466 5.0 4.0 4.5 0.7 1474 chr3R 29738263 intergenic CG1969 +,CG7598 + chr3R 29739000 intron CG1969 + chr3R 29739737 5` UTR CG1969 + chr3R_4_29735001 chr3R_29735001 RAL-897 1988 chr3R 29738271 29738300 chr3R 29739729 29739767 hobo 14 1464 3.0 4.0 3.5 3.1 1496 chr3R 29738271 intergenic CG1969 +,CG7598 + chr3R 29739019 intron CG1969 + chr3R 29739767 5` UTR CG1969 + chr3R_14_29735001 chr3R_29735001 RAL-897 1989 chr3R 29754984 29754986 chr3R 29755061 29755063 4 77 0.0 5.0 2.5 1.1 79 chr3R 29754984 intergenic CR44953 -,yata + chr3R 29755024 intergenic CR44953 -,yata + chr3R 29755063 intergenic CR44953 - chr3R_4_29755001 chr3R_29755001 RAL-897 1990 chr3R 29761784 29761809 chr3R 29761874 29761900 23 90 3.5 5.5 4.5 4.2 116 chr3R 29761784 intergenic not near genes chr3R 29761842 intergenic not near genes chr3R 29761900 intergenic not near genes chr3R_23_29760001 chr3R_29760001 RAL-897 1991 chr3R 29854826 29854861 chr3R 29854906 29854941 15 77 2.0 6.0 4.0 3.0 115 chr3R 29854826 3` UTR dgt1 - chr3R 29854884 exon dgt1 - chr3R 29854941 exon dgt1 - chr3R_15_29850001 chr3R_29850001 RAL-897 1992 chr3R 29882034 29882053 chr3R 29891176 29891209 roo 5 9150 2.5 4.5 3.5 1.1 9175 chr3R 29882034 intron CG31038 + chr3R 29886622 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-897 1993 chr3R 29953445 29953479 chr3R 29953526 29953530 9 77 5.5 5.5 5.5 1.4 85 chr3R 29953445 exon TkR99D - chr3R 29953488 intron TkR99D - chr3R 29953530 intron TkR99D - chr3R_9_29950001 chr3R_29950001 RAL-897 1994 chr3R 30032162 30032185 chr3R 30032241 30032259 10 78 4.0 2.5 3.2 2.4 97 chr3R 30032162 intron Axn + chr3R 30032210 intron Axn + chr3R 30032259 intron Axn + chr3R_10_30030001 chr3R_30030001 RAL-897 1995 chr3R 30077903 30077939 chr3R 30077990 30078020 19 83 4.5 3.0 3.8 4.0 117 chr3R 30077903 intron sima + chr3R 30077962 intron sima + chr3R 30078020 intron sima + chr3R_19_30075001 chr3R_30075001 RAL-897 1996 chr3R 30084849 30084881 chr3R 30086315 30086348 hobo 16 1465 6.0 5.0 5.5 2.5 1499 chr3R 30084849 intron sima + chr3R 30085598 intron sima + chr3R 30086348 intron sima + chr3R_16_30085001 chr3R_30085001 RAL-897 1997 chr3R 30175696 30175710 chr3R 30175782 30175795 10 85 1.5 1.5 1.5 4.0 99 chr3R 30175696 intergenic CG1983 - chr3R 30175746 intergenic CG1983 - chr3R 30175795 3` UTR CG1983 - chr3R_10_30175001 chr3R_30175001 RAL-897 1998 chr3R 30238763 30238792 chr3R 30239926 30239956 1360 4 1163 2.5 0.5 1.5 1.6 1193 chr3R 30238763 intergenic not near genes chr3R 30239360 intergenic not near genes chr3R 30239956 intergenic not near genes chr3R_4_30235001 chr3R_30235001 RAL-897 1999 chr3R 30262578 30262606 chr3R 30262675 30262703 18 95 5.0 2.5 3.8 3.8 125 chr3R 30262578 intergenic not near genes chr3R 30262640 intergenic not near genes chr3R 30262703 intergenic not near genes chr3R_18_30260001 chr3R_30260001 RAL-897 2000 chr3R 30268244 30268447 chr3R 30268323 30268528 25 78 5.0 4.0 4.5 4.5 284 chr3R 30268244 intergenic not near genes chr3R 30268386 intergenic not near genes chr3R 30268528 intergenic not near genes chr3R_25_30265001 chr3R_30265001 RAL-897 2001 chr3R 30298172 30298199 chr3R 30298278 30298305 10 105 4.0 2.5 3.2 2.4 133 chr3R 30298172 intron hdc + chr3R 30298238 intron hdc + chr3R 30298305 intron hdc + chr3R_10_30295001 chr3R_30295001 RAL-897 2002 chr3R 30317330 30317356 chr3R 30324922 30324948 roo 6 7592 2.0 7.0 4.5 1.1 7618 chr3R 30317330 intron hdc + chr3R 30321139 intron hdc + chr3R 30324948 intron hdc + chr3R_6_30320001 chr3R_30320001 RAL-897 2003 chr3R 30332030 30332058 chr3R 30332109 30332123 18 76 6.0 2.5 4.2 3.5 93 chr3R 30332030 intron hdc + chr3R 30332076 intron hdc + chr3R 30332123 intron hdc + chr3R_18_30330001 chr3R_30330001 RAL-897 2004 chr3R 30456395 30456425 chr3R 30456475 30456505 8 80 0.5 4.0 2.2 2.5 110 chr3R 30456395 intergenic CG2224 - chr3R 30456450 3` UTR CG2224 - chr3R 30456505 3` UTR CG2224 - chr3R_8_30455001 chr3R_30455001 RAL-897 2005 chr3R 30458012 30458042 chr3R 30458092 30458121 12 80 2.5 4.5 3.5 2.7 109 chr3R 30458012 intron CG2224 - chr3R 30458066 intron CG2224 - chr3R 30458121 intron CG2224 - chr3R_12_30455001 chr3R_30455001 RAL-897 2006 chr3R 30466702 30466728 chr3R 30466782 30466808 12 80 3.5 6.0 4.8 2.1 106 chr3R 30466702 intron PH4alphaEFB + chr3R 30466755 intron PH4alphaEFB + chr3R 30466808 intron PH4alphaEFB + chr3R_12_30465001 chr3R_30465001 RAL-897 2007 chr3R 30480473 30480513 chr3R 30482941 30482981 jockey 21 2466 2.5 4.0 3.2 5.0 2508 chr3R 30480473 intron PH4alphaEFB + chr3R 30481727 intron PH4alphaEFB + chr3R 30482981 intron PH4alphaEFB + chr3R_21_30480001 chr3R_30480001 RAL-897 2008 chr3R 30485038 30485067 chr3R 30485114 30485143 17 75 3.5 4.5 4.0 3.4 105 chr3R 30485038 intron PH4alphaEFB + chr3R 30485090 intron PH4alphaEFB + chr3R 30485143 intron PH4alphaEFB + chr3R_17_30485001 chr3R_30485001 RAL-897 2009 chr3R 30532748 30532762 chr3R 30532814 30532828 11 71 10.5 10.0 10.2 1.0 80 chr3R 30532748 intron tmod + chr3R 30532788 intron tmod + chr3R 30532828 intron tmod + chr3R_11_30530001 chr3R_30530001 RAL-897 2010 chr3R 30539723 30539734 chr3R 30540368 30540379 4 645 2.5 3.5 3.0 1.0 656 chr3R 30539723 intron tmod + chr3R 30540051 intron tmod + chr3R 30540379 intron tmod + chr3R_4_30540001 chr3R_30540001 RAL-897 2011 chr3R 30549009 30549039 chr3R 30549101 30549131 9 90 2.5 5.0 3.8 1.9 122 chr3R 30549009 intron tmod + chr3R 30549070 intron tmod + chr3R 30549131 intron tmod + chr3R_9_30545001 chr3R_30545001 RAL-897 2012 chr3R 30571699 30571717 chr3R 30571779 30571795 7 80 2.5 3.0 2.8 1.8 96 chr3R 30571699 intron tmod + chr3R 30571747 intron tmod + chr3R 30571795 intron tmod + chr3R_7_30570001 chr3R_30570001 RAL-897 2013 chr3R 30627613 30627623 chr3R 30627689 30627701 6 77 11.0 12.0 11.5 0.5 88 chr3R 30627613 exon CG2267 - chr3R 30627657 exon CG2267 - chr3R 30627701 exon CG2267 - chr3R_6_30625001 chr3R_30625001 RAL-897 2014 chr3R 30627625 30627629 chr3R 30627685 30627709 5 72 10.5 11.0 10.8 0.4 84 chr3R 30627625 exon CG2267 - chr3R 30627667 exon CG2267 - chr3R 30627709 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-897 2015 chr3R 30679517 30679551 chr3R 30686986 30687019 blood 14 7468 4.5 10.0 7.2 1.7 7502 chr3R 30679517 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687019 intergenic not near genes chr3R_14_30680001 chr3R_30680001 RAL-897 2016 chr3R 30818809 30818841 chr3R 30820374 30820406 1360 10 1564 2.5 0.0 1.2 4.5 1597 chr3R 30818809 intron cindr + chr3R 30819608 intron cindr + chr3R 30820406 intron cindr + chr3R_10_30815001 chr3R_30815001 RAL-897 2017 chr3R 30830560 30830589 chr3R 30830642 30830671 10 80 9.0 2.5 5.8 1.5 111 chr3R 30830560 intron CG15544 + chr3R 30830616 intron CG15544 + chr3R 30830671 intron CG15544 + chr3R_10_30830001 chr3R_30830001 RAL-897 2018 chr3R 30859413 30859421 chr3R 30859491 30859499 4 78 1.0 5.0 3.0 1.0 86 chr3R 30859413 intergenic not near genes chr3R 30859456 intergenic not near genes chr3R 30859499 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-897 2019 chr3R 30863338 30863365 chr3R 30863413 30863444 19 75 4.5 5.5 5.0 3.2 106 chr3R 30863338 intergenic not near genes chr3R 30863391 intergenic not near genes chr3R 30863444 intergenic not near genes chr3R_19_30860001 chr3R_30860001 RAL-897 2020 chr3R 30948074 30948107 chr3R 30948265 30948298 18 190 5.0 4.5 4.8 3.1 224 chr3R 30948074 intergenic not near genes chr3R 30948186 intergenic not near genes chr3R 30948298 intergenic not near genes chr3R_18_30945001 chr3R_30945001 RAL-897 2021 chr3R 30953840 30953867 chr3R 30953941 30953967 9 100 1.5 3.0 2.2 2.8 127 chr3R 30953840 intergenic not near genes chr3R 30953904 intergenic not near genes chr3R 30953967 intergenic not near genes chr3R_9_30950001 chr3R_30950001 RAL-897 2022 chr3R 30980201 30980237 chr3R 30980282 30980318 19 80 4.0 9.0 6.5 2.5 117 chr3R 30980201 intron 5-HT7 - chr3R 30980260 intron 5-HT7 - chr3R 30980318 intron 5-HT7 - chr3R_19_30980001 chr3R_30980001 RAL-897 2023 chr3R 30982595 30982631 chr3R 30982687 30982699 6 80 3.5 3.0 3.2 1.4 104 chr3R 30982595 intron 5-HT7 - chr3R 30982647 intron 5-HT7 - chr3R 30982699 intron 5-HT7 - chr3R_6_30980001 chr3R_30980001 RAL-897 2024 chr3R 30996641 30996664 chr3R 30996863 30996888 11 222 3.0 5.5 4.2 2.1 247 chr3R 30996641 intron 5-HT7 - chr3R 30996764 intron 5-HT7 - chr3R 30996888 intron 5-HT7 - chr3R_11_30995001 chr3R_30995001 RAL-897 2025 chr3R 31026602 31026632 chr3R 31026881 31026911 12 279 4.5 2.5 3.5 2.7 309 chr3R 31026602 intergenic not near genes chr3R 31026756 intergenic not near genes chr3R 31026911 intergenic not near genes chr3R_12_31025001 chr3R_31025001 RAL-897 2026 chr3R 31047214 31047234 chr3R 31047508 31047528 10 293 6.5 1.0 3.8 2.1 314 chr3R 31047214 intergenic CanA1 + chr3R 31047371 intergenic not near genes chr3R 31047528 intergenic not near genes chr3R_10_31045001 chr3R_31045001 RAL-897 2027 chr3R 31074229 31074256 chr3R 31081827 31081854 springer 10 7596 5.5 7.0 6.2 1.4 7625 chr3R 31074229 intron Sox100B + chr3R 31078042 intron Sox100B + chr3R 31081854 intron Sox100B + chr3R_10_31075001 chr3R_31075001 RAL-897 2028 chr3R 31084909 31084934 chr3R 31084985 31085010 6 76 1.0 1.0 1.0 3.0 101 chr3R 31084909 intergenic not near genes chr3R 31084960 intergenic not near genes chr3R 31085010 intergenic not near genes chr3R_6_31080001 chr3R_31080001 RAL-897 2029 chr3R 31236063 31236091 chr3R 31236142 31236170 8 78 3.0 6.5 4.8 1.4 107 chr3R 31236063 3` UTR qless - chr3R 31236116 3` UTR qless - chr3R 31236170 3` UTR qless - chr3R_8_31235001 chr3R_31235001 RAL-897 2030 chr3R 31270898 31270908 chr3R 31270980 31270988 4 82 11.5 0.0 5.8 0.6 90 chr3R 31270898 intergenic not near genes chr3R 31270943 intergenic not near genes chr3R 31270988 intergenic not near genes chr3R_4_31270001 chr3R_31270001 RAL-897 2031 chr3R 31279372 31279404 chr3R 31285562 31285594 diver 11 6189 6.0 4.0 5.0 1.8 6222 chr3R 31279372 intergenic not near genes chr3R 31282483 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_11_31280001 chr3R_31280001 RAL-897 2032 chr3R 31380966 31380985 chr3R 31381153 31381172 10 185 4.5 6.0 5.2 1.6 206 chr3R 31380966 intergenic not near genes chr3R 31381069 intergenic not near genes chr3R 31381172 intergenic not near genes chr3R_10_31380001 chr3R_31380001 RAL-897 2033 chr3R 31413087 31413121 chr3R 31418287 31418317 copia 11 5198 4.5 6.5 5.5 1.7 5230 chr3R 31413087 intron Gprk2 + chr3R 31415702 intron Gprk2 + chr3R 31418317 intron Gprk2 + chr3R_11_31415001 chr3R_31415001 RAL-897 2034 chr3R 31435361 31435389 chr3R 31435513 31435541 12 152 3.0 5.0 4.0 2.4 180 chr3R 31435361 intron Gprk2 + chr3R 31435451 intron Gprk2 + chr3R 31435541 intron Gprk2 + chr3R_12_31435001 chr3R_31435001 RAL-897 2035 chr3R 31448603 31448628 chr3R 31448679 31448703 11 74 7.0 5.0 6.0 1.6 100 chr3R 31448603 intron Gprk2 + chr3R 31448653 intron Gprk2 + chr3R 31448703 intron Gprk2 + chr3R_11_31445001 chr3R_31445001 RAL-897 2036 chr3R 31449981 31450015 chr3R 31450075 31450084 5 88 6.0 7.5 6.8 0.6 103 chr3R 31449981 intron Gprk2 + chr3R 31450032 intron Gprk2 + chr3R 31450084 intron Gprk2 + chr3R_5_31450001 chr3R_31450001 RAL-897 2037 chr3R 31503137 31503140 chr3R 31503229 31503237 7 94 2.5 7.0 4.8 1.2 100 chr3R 31503137 intron mey + chr3R 31503187 intron mey + chr3R 31503237 intron mey + chr3R_7_31500001 chr3R_31500001 RAL-897 2038 chr3R 31503142 31503160 chr3R 31503226 31503257 12 94 1.5 5.5 3.5 2.7 115 chr3R 31503142 intron mey + chr3R 31503200 intron mey + chr3R 31503257 intron mey + chr3R_12_31500001 chr3R_31500001 RAL-897 2039 chr3R 31530817 31530849 chr3R 31531142 31531152 15 315 4.0 3.0 3.5 3.3 335 chr3R 31530817 intergenic not near genes chr3R 31530984 intergenic not near genes chr3R 31531152 intergenic not near genes chr3R_15_31530001 chr3R_31530001 RAL-897 2040 chr3R 31630060 31630077 chr3R 31630165 31630182 9 104 5.0 2.5 3.8 1.9 122 chr3R 31630060 intron kek6 + chr3R 31630121 intron kek6 + chr3R 31630182 intron kek6 + chr3R_9_31630001 chr3R_31630001 RAL-897 2041 chr3R 31691539 31691548 chr3R 31696305 31696314 Doc 5 4765 10.0 14.5 12.2 0.4 4775 chr3R 31691539 intergenic not near genes chr3R 31693926 intergenic not near genes chr3R 31696314 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-897 2042 chr3R 31691551 31691563 chr3R 31696300 31696329 Doc 12 4754 7.0 13.0 10.0 1.1 4778 chr3R 31691551 intergenic not near genes chr3R 31693940 intergenic not near genes chr3R 31696329 intergenic not near genes chr3R_12_31690001 chr3R_31690001 RAL-897 2043 chr3R 31774872 31774888 chr3R 31775017 31775033 5 143 8.0 2.5 5.2 0.8 161 chr3R 31774872 3` UTR sip3 + chr3R 31774952 3` UTR sip3 + chr3R 31775033 3` UTR sip3 + chr3R_5_31770001 chr3R_31770001 RAL-897 2044 chr3R 31860276 31860302 chr3R 31860351 31860382 7 79 4.5 3.5 4.0 1.4 106 chr3R 31860276 intron heph - chr3R 31860329 intron heph - chr3R 31860382 intron heph - chr3R_7_31860001 chr3R_31860001 RAL-897 2045 chr3R 31915497 31915520 chr3R 31915588 31915622 9 104 4.0 0.5 2.2 2.8 125 chr3R 31915497 intron heph - chr3R 31915560 intron heph - chr3R 31915622 intron heph - chr3R_9_31915001 chr3R_31915001 RAL-897 2046 chr3R 31924166 31924184 chr3R 31924318 31924330 9 151 8.0 0.0 4.0 1.8 164 chr3R 31924166 intron heph - chr3R 31924248 intron heph - chr3R 31924330 intron heph - chr3R_9_31920001 chr3R_31920001 RAL-897 2047 chr3R 31924601 31924606 chr3R 31924682 31924685 4 80 0.0 8.0 4.0 0.8 84 chr3R 31924601 intron heph - chr3R 31924643 intron heph - chr3R 31924685 intron heph - chr3R_4_31920001 chr3R_31920001 RAL-897 2048 chr3R 31931202 31931215 chr3R 31931285 31931298 4 82 4.0 5.5 4.8 0.7 96 chr3R 31931202 intron heph - chr3R 31931250 intron heph - chr3R 31931298 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-897 2049 chr3R 31997990 31998025 chr3R 32005460 32005495 blood 9 7469 3.5 5.0 4.2 1.7 7505 chr3R 31997990 intron heph - chr3R 32001742 intron heph - chr3R 32005495 intron heph - chr3R_9_32000001 chr3R_32000001 RAL-897 2050 chr4 76489 76529 chr4 81932 81953 I-element 5 5435 2.0 2.5 2.2 1.6 5464 chr4 76489 intron pan + chr4 79221 intron pan + chr4 81953 intron pan + chr4_5_75001 chr4_75001 RAL-897 2051 chr4 412675 412694 chr4 412759 412779 4 85 1.0 3.0 2.0 1.3 104 chr4 412675 intergenic not near genes chr4 412727 intergenic not near genes chr4 412779 intergenic not near genes chr4_4_410001 chr4_410001 RAL-897 2052 chr4 671604 671635 chr4 680186 680217 Tirant 19 8579 2.0 4.5 3.2 4.5 8613 chr4 671604 intron CG11360 + chr4 675910 intron CG11360 + chr4 680217 intron CG11360 + chr4_19_675001 chr4_675001 RAL-897 2053 chr4 896784 896815 chr4 896861 896893 9 76 4.5 4.0 4.2 1.7 109 chr4 896784 intron unc-13 - chr4 896838 intron unc-13 - chr4 896893 intron unc-13 - chr4_9_895001 chr4_895001 RAL-897 2054 chr4 896644 896677 chr4 898307 898340 INE-1 4 1664 28.5 15.5 22.0 0.2 1696 chr4 896644 intron unc-13 - chr4 897492 intron unc-13 - chr4 898340 intron unc-13 - chr4_4_895001 chr4_895001 RAL-897 2055 chr4 1109883 1109908 chr4 1109974 1109999 4 91 17.0 18.0 17.5 0.2 116 chr4 1109883 intron sv + chr4 1109941 intron sv + chr4 1109999 intron sv + chr4_4_1105001 chr4_1105001 RAL-897 2056 chrX 295856 295879 chrX 303476 303499 412 5 7619 3.5 4.0 3.8 1.0 7643 chrX 295856 intron CG3777 + chrX 299678 intron CG3777 + chrX 303499 intron CG3777 + chrX_5_295001 chrX_295001 RAL-897 2057 chrX 318478 318499 chrX 323564 323585 flea 4 5085 2.0 4.0 3.0 1.0 5107 chrX 318478 intron,intron CG3777 +,CG32816 - chrX 321032 intron,intron CG3777 +,CG32816 - chrX 323585 intron,intron CG3777 +,CG32816 - chrX_4_320001 chrX_320001 RAL-897 2058 chrX 428416 428446 chrX 434601 434631 3S18 6 6185 7.0 2.5 4.8 1.0 6215 chrX 428416 intron CG32816 - chrX 431524 intron CG32816 - chrX 434631 intron CG32816 - chrX_6_430001 chrX_430001 RAL-897 2059 chrX 551432 551450 chrX 558994 559011 412 7 7560 7.0 8.0 7.5 0.8 7579 chrX 551432 intron Appl + chrX 555222 intron Appl + chrX 559011 intron Appl + chrX_7_555001 chrX_555001 RAL-897 2060 chrX 551451 551453 chrX 558986 559015 412 4 7554 6.5 5.5 6.0 0.6 7564 chrX 551451 intron Appl + chrX 555233 intron Appl + chrX 559015 intron Appl + chrX_4_555001 chrX_555001 RAL-897 2061 chrX 796742 796772 chrX 796832 796862 19 86 5.0 4.5 4.8 3.3 120 chrX 796742 3` UTR CG16989 + chrX 796802 3` UTR CG16989 + chrX 796862 3` UTR CG16989 + chrX_19_795001 chrX_795001 RAL-897 2062 chrX 802286 802321 chrX 802362 802364 9 72 4.5 3.5 4.0 1.8 78 chrX 802286 exon CG13359 - chrX 802325 exon CG13359 - chrX 802364 exon CG13359 - chrX_9_800001 chrX_800001 RAL-897 2063 chrX 827602 827615 chrX 835394 835407 roo 6 7792 9.5 6.0 7.8 0.7 7805 chrX 827602 intron CG43867 - chrX 831504 intron CG43867 - chrX 835407 intron CG43867 - chrX_6_830001 chrX_830001 RAL-897 2064 chrX 827616 827632 chrX 835391 835424 roo 9 7789 5.5 4.5 5.0 1.5 7808 chrX 827616 intron CG43867 - chrX 831520 intron CG43867 - chrX 835424 intron CG43867 - chrX_9_830001 chrX_830001 RAL-897 2065 chrX 888713 888726 chrX 888792 888805 7 79 3.0 0.0 1.5 2.8 92 chrX 888713 intron CG43867 - chrX 888759 intron CG43867 - chrX 888805 intron CG43867 - chrX_7_885001 chrX_885001 RAL-897 2066 chrX 906701 906734 chrX 908490 908523 S-element 14 1787 2.5 7.0 4.8 2.4 1822 chrX 906701 intron CG43867 - chrX 907612 intron CG43867 - chrX 908523 intron CG43867 - chrX_14_905001 chrX_905001 RAL-897 2067 chrX 1047607 1047623 chrX 1047716 1047727 4 110 4.5 6.5 5.5 0.6 120 chrX 1047607 intron CR44779 + chrX 1047667 intron CR44779 + chrX 1047727 intron CR44779 + chrX_4_1045001 chrX_1045001 RAL-897 2068 chrX 1139898 1139906 chrX 1140687 1140711 7 801 3.0 2.5 2.8 1.8 813 chrX 1139898 intergenic not near genes chrX 1140304 intergenic not near genes chrX 1140711 intergenic not near genes chrX_7_1140001 chrX_1140001 RAL-897 2069 chrX 1253732 1253762 chrX 1253814 1253844 15 80 4.5 7.0 5.8 2.2 112 chrX 1253732 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253844 intron Atf3 - chrX_15_1250001 chrX_1250001 RAL-897 2070 chrX 1357774 1357808 chrX 1367944 1367978 Doc 13 10167 5.5 3.0 4.2 2.5 10204 chrX 1357774 intergenic png - chrX 1362876 intergenic not near genes chrX 1367978 intergenic not near genes chrX_13_1360001 chrX_1360001 RAL-897 2071 chrX 1428592 1428616 chrX 1428678 1428702 13 86 5.0 3.0 4.0 2.6 110 chrX 1428592 intron futsch + chrX 1428647 intron futsch + chrX 1428702 intron futsch + chrX_13_1425001 chrX_1425001 RAL-897 2072 chrX 1429616 1429648 chrX 1429694 1429724 12 75 6.0 4.0 5.0 2.0 108 chrX 1429616 intron futsch + chrX 1429670 intron futsch + chrX 1429724 intron futsch + chrX_12_1425001 chrX_1425001 RAL-897 2073 chrX 1518042 1518062 chrX 1523443 1523463 jockey 6 5400 4.0 10.0 7.0 0.8 5421 chrX 1518042 intergenic inc + chrX 1520752 intergenic not near genes chrX 1523463 intergenic not near genes chrX_6_1520001 chrX_1520001 RAL-897 2074 chrX 1627975 1628006 chrX 1635442 1635463 gtwin 13 7465 2.5 5.5 4.0 2.6 7488 chrX 1627975 intron,intron Mur2B -,br + chrX 1631719 intron,intron Mur2B -,br + chrX 1635463 intron,intron Mur2B -,br + chrX_13_1630001 chrX_1630001 RAL-897 2075 chrX 1699825 1699863 chrX 1700080 1700117 11 253 4.0 2.5 3.2 2.6 292 chrX 1699825 intergenic not near genes chrX 1699971 intergenic not near genes chrX 1700117 intergenic not near genes chrX_11_1695001 chrX_1695001 RAL-897 2076 chrX 1954886 1954918 chrX 1962826 1962838 Stalker2 4 7932 4.0 3.0 3.5 0.9 7952 chrX 1954886 intron Hr4 + chrX 1958862 intron Hr4 + chrX 1962838 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-897 2077 chrX 2069369 2069403 chrX 2069469 2069503 11 100 1.5 2.5 2.0 3.7 134 chrX 2069369 intron,exon CG4199 -,CG4194 + chrX 2069436 intron,3` UTR CG4199 -,CG4194 + chrX 2069503 intron,3` UTR CG4199 -,CG4194 + chrX_11_2065001 chrX_2065001 RAL-897 2078 chrX 2096367 2096389 chrX 2096460 2096482 7 93 1.5 3.5 2.5 2.0 115 chrX 2096367 intron csw + chrX 2096424 intron csw + chrX 2096482 intron csw + chrX_7_2095001 chrX_2095001 RAL-897 2079 chrX 2385741 2385765 chrX 2385810 2385843 4 76 1.5 1.5 1.5 1.6 102 chrX 2385741 intron PsGEF - chrX 2385792 intron PsGEF - chrX 2385843 intron PsGEF - chrX_4_2385001 chrX_2385001 RAL-897 2080 chrX 2397922 2397925 chrX 2398015 2398019 4 94 6.5 0.0 3.2 1.0 97 chrX 2397922 intergenic not near genes chrX 2397970 intergenic not near genes chrX 2398019 intergenic not near genes chrX_4_2395001 chrX_2395001 RAL-897 2081 chrX 2399837 2399867 chrX 2408188 2408190 roo 9 8343 3.5 2.0 2.8 2.4 8353 chrX 2399837 intergenic not near genes chrX 2404014 intergenic not near genes chrX 2408190 intergenic not near genes chrX_9_2400001 chrX_2400001 RAL-897 2082 chrX 2515156 2515177 chrX 2515260 2515281 5 103 6.0 1.5 3.8 1.0 125 chrX 2515156 intron trol - chrX 2515218 intron trol - chrX 2515281 intron trol - chrX_5_2515001 chrX_2515001 RAL-897 2083 chrX 2664388 2664396 chrX 2665534 2665542 1360 4 1146 3.0 3.5 3.2 1.0 1154 chrX 2664388 intron sgg + chrX 2664965 intron sgg + chrX 2665542 intron sgg + chrX_4_2660001 chrX_2660001 RAL-897 2084 chrX 2664403 2664418 chrX 2665531 2665564 1360 4 1142 1.5 3.0 2.2 1.2 1161 chrX 2664403 intron sgg + chrX 2664984 intron sgg + chrX 2665564 intron sgg + chrX_4_2660001 chrX_2660001 RAL-897 2085 chrX 2797332 2797355 chrX 2797411 2797434 7 79 5.0 1.5 3.2 1.7 102 chrX 2797332 intron kirre + chrX 2797383 intron kirre + chrX 2797434 intron kirre + chrX_7_2795001 chrX_2795001 RAL-897 2086 chrX 2844902 2844930 chrX 2852311 2852340 mdg1 6 7410 1.0 2.5 1.8 2.1 7438 chrX 2844902 intron kirre + chrX 2848621 intron kirre + chrX 2852340 intron kirre + chrX_6_2845001 chrX_2845001 RAL-897 2087 chrX 2888111 2888147 chrX 2888189 2888225 14 76 3.5 2.0 2.8 3.7 114 chrX 2888111 intron kirre + chrX 2888168 intron kirre + chrX 2888225 intron kirre + chrX_14_2885001 chrX_2885001 RAL-897 2088 chrX 2932244 2932255 chrX 2932308 2932312 4 71 4.0 3.0 3.5 0.9 68 chrX 2932244 intron,exon kirre +,CG32793 + chrX 2932278 intron,exon kirre +,CG32793 + chrX 2932312 intron,exon kirre +,CG32793 + chrX_4_2930001 chrX_2930001 RAL-897 2089 chrX 3058020 3058043 chrX 3058261 3058272 pogo 4 238 3.0 2.5 2.8 1.1 252 chrX 3058020 intron kirre + chrX 3058146 intron kirre + chrX 3058272 intron kirre + chrX_4_3055001 chrX_3055001 RAL-897 2090 chrX 3075638 3075665 chrX 3080944 3080971 Transpac 11 5304 3.0 4.0 3.5 2.4 5333 chrX 3075638 intron kirre + chrX 3078304 intron kirre + chrX 3080971 intron kirre + chrX_11_3075001 chrX_3075001 RAL-897 2091 chrX 3109451 3109473 chrX 3109528 3109550 8 75 2.5 6.0 4.2 1.5 99 chrX 3109451 intron kirre + chrX 3109500 intron kirre + chrX 3109550 intron kirre + chrX_8_3105001 chrX_3105001 RAL-897 2092 chrX 3120076 3120097 chrX 3120154 3120175 9 76 0.0 6.0 3.0 2.2 99 chrX 3120076 intron kirre + chrX 3120126 intron kirre + chrX 3120175 intron kirre + chrX_9_3120001 chrX_3120001 RAL-897 2093 chrX 3146955 3146984 chrX 3147068 3147092 7 113 2.0 5.0 3.5 1.6 137 chrX 3146955 intron N + chrX 3147024 intron N + chrX 3147092 intron N + chrX_7_3145001 chrX_3145001 RAL-897 2094 chrX 3203470 3203496 chrX 3203667 3203695 16 198 1.5 6.0 3.8 3.3 225 chrX 3203470 intron dnc + chrX 3203582 intron dnc + chrX 3203695 intron dnc + chrX_16_3200001 chrX_3200001 RAL-897 2095 chrX 3218507 3218524 chrX 3227656 3227673 roo 6 9149 1.0 2.0 1.5 2.4 9166 chrX 3218507 intron dnc + chrX 3223090 intron dnc + chrX 3227673 intron dnc + chrX_6_3220001 chrX_3220001 RAL-897 2096 chrX 3398148 3398156 chrX 3398228 3398237 4 81 6.5 10.0 8.2 0.4 89 chrX 3398148 intron,intron CR44999 +,CG12535 - chrX 3398192 intron,intron CR44999 +,CG12535 - chrX 3398237 intron,intron CR44999 +,CG12535 - chrX_4_3395001 chrX_3395001 RAL-897 2097 chrX 3408983 3409015 chrX 3409060 3409092 9 76 0.0 4.5 2.2 2.8 109 chrX 3408983 intron,intron CR44999 +,CG12535 - chrX 3409038 intron,intron CR44999 +,CG12535 - chrX 3409092 intron,intron CR44999 +,CG12535 - chrX_9_3405001 chrX_3405001 RAL-897 2098 chrX 3493098 3493124 chrX 3502257 3502282 roo 12 9158 3.5 1.5 2.5 3.4 9184 chrX 3493098 intron,intron CR44999 +,Gas8 - chrX 3497690 intron,intron CR44999 +,Gas8 - chrX 3502282 intron,intron CR44999 +,Gas8 - chrX_12_3495001 chrX_3495001 RAL-897 2099 chrX 3535415 3535432 chrX 3535506 3535519 6 90 3.5 4.0 3.8 1.2 104 chrX 3535415 intron CG32791 - chrX 3535467 intron CG32791 - chrX 3535519 intron CG32791 - chrX_6_3535001 chrX_3535001 RAL-897 2100 chrX 3597115 3597128 chrX 3597203 3597206 5 86 2.0 5.0 3.5 1.1 91 chrX 3597115 intron AstA-R1 + chrX 3597160 intron AstA-R1 + chrX 3597206 intron AstA-R1 + chrX_5_3595001 chrX_3595001 RAL-897 2101 chrX 3597551 3597580 chrX 3619719 3619744 roo 11 22167 3.0 2.5 2.8 2.9 22193 chrX 3597551 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619744 intron AstA-R1 + chrX_11_3605001 chrX_3605001 RAL-897 2102 chrX 3703710 3703725 chrX 3703798 3703813 5 88 2.5 1.5 2.0 1.7 103 chrX 3703710 intergenic CR45102 + chrX 3703762 intergenic CR45102 + chrX 3703813 intergenic not near genes chrX_5_3700001 chrX_3700001 RAL-897 2103 chrX 3726772 3726797 chrX 3730169 3730194 NOF 10 3396 1.5 5.0 3.2 2.4 3422 chrX 3726772 intron tlk + chrX 3728483 intron tlk + chrX 3730194 intron tlk + chrX_10_3725001 chrX_3725001 RAL-897 2104 chrX 3880472 3880488 chrX 3880556 3880574 5 85 1.5 4.5 3.0 1.2 102 chrX 3880472 intergenic VhaAC39-1 + chrX 3880523 intergenic VhaAC39-1 + chrX 3880574 intergenic VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-897 2105 chrX 3881277 3881302 chrX 3881416 3881441 8 138 8.0 4.0 6.0 1.1 164 chrX 3881277 intron VhaAC39-1 + chrX 3881359 intron VhaAC39-1 + chrX 3881441 intron VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-897 2106 chrX 3915520 3915522 chrX 3915607 3915609 4 87 7.0 2.0 4.5 0.7 89 chrX 3915520 intron CG42541 - chrX 3915564 intron CG42541 - chrX 3915609 intron CG42541 - chrX_4_3915001 chrX_3915001 RAL-897 2107 chrX 3915524 3915547 chrX 3915606 3915634 5 84 2.0 2.0 2.0 1.7 110 chrX 3915524 intron CG42541 - chrX 3915579 intron CG42541 - chrX 3915634 intron CG42541 - chrX_5_3915001 chrX_3915001 RAL-897 2108 chrX 3922131 3922157 chrX 3922406 3922432 11 274 0.0 4.0 2.0 3.7 301 chrX 3922131 intron CG42541 - chrX 3922282 intron CG42541 - chrX 3922432 intron CG42541 - chrX_11_3920001 chrX_3920001 RAL-897 2109 chrX 3986862 3986894 chrX 3994495 3994523 412 12 7632 2.5 3.5 3.0 3.0 7661 chrX 3986862 intergenic not near genes chrX 3990692 intergenic not near genes chrX 3994523 intergenic not near genes chrX_12_3990001 chrX_3990001 RAL-897 2110 chrX 4067987 4067988 chrX 10754861 10754861 4 6686874 14.0 32.5 23.2 0.2 6686874 chrX 4067987 intergenic not near genes chrX 7411424 3` UTR CG42246 - chrX 10754861 intron Rph - chrX_4_7410001 chrX_7410001 RAL-897 2111 chrX 4324391 4324409 chrX 4324468 4324486 9 77 2.0 1.0 1.5 3.6 95 chrX 4324391 intron norpA + chrX 4324438 intron norpA + chrX 4324486 intron norpA + chrX_9_4320001 chrX_4320001 RAL-897 2112 chrX 4398822 4398853 chrX 4398911 4398942 7 86 2.0 1.5 1.8 2.5 120 chrX 4398822 intron CR32773 - chrX 4398882 intron CR32773 - chrX 4398942 intron CR32773 - chrX_7_4395001 chrX_4395001 RAL-897 2113 chrX 4525759 4525763 chrX 4525849 4525855 4 92 4.5 3.0 3.8 0.8 96 chrX 4525759 intron CR32773 - chrX 4525807 intron CR32773 - chrX 4525855 intron CR32773 - chrX_4_4525001 chrX_4525001 RAL-897 2114 chrX 4619843 4619864 chrX 4619928 4619949 6 85 4.5 8.5 6.5 0.8 106 chrX 4619843 intron peb + chrX 4619896 intron peb + chrX 4619949 intron peb + chrX_6_4615001 chrX_4615001 RAL-897 2115 chrX 4693765 4693782 chrX 4693849 4693877 8 91 0.0 3.5 1.8 2.9 112 chrX 4693765 intron ctp + chrX 4693821 intron ctp + chrX 4693877 intron ctp + chrX_8_4690001 chrX_4690001 RAL-897 2116 chrX 4700392 4700412 chrX 4700734 4700755 jockey 6 343 5.0 3.5 4.2 1.2 363 chrX 4700392 3` UTR ctp + chrX 4700574 3` UTR ctp + chrX 4700755 3` UTR ctp + chrX_6_4700001 chrX_4700001 RAL-897 2117 chrX 4731818 4731832 chrX 4736907 4736925 jockey 8 5092 8.0 6.5 7.2 1.0 5107 chrX 4731818 intergenic not near genes chrX 4734372 intergenic not near genes chrX 4736925 intergenic not near genes chrX_8_4730001 chrX_4730001 RAL-897 2118 chrX 4763249 4763280 chrX 4763737 4763768 Stalker4 16 487 4.5 3.5 4.0 3.2 519 chrX 4763249 intergenic not near genes chrX 4763508 intergenic not near genes chrX 4763768 intergenic not near genes chrX_16_4760001 chrX_4760001 RAL-897 2119 chrX 4787075 4787093 chrX 4787172 4787189 7 97 2.0 1.0 1.5 2.8 114 chrX 4787075 intergenic not near genes chrX 4787132 intergenic not near genes chrX 4787189 intergenic not near genes chrX_7_4785001 chrX_4785001 RAL-897 2120 chrX 4792391 4792404 chrX 4792821 4792837 jockey 4 432 4.0 10.5 7.2 0.5 446 chrX 4792391 intergenic not near genes chrX 4792614 intergenic not near genes chrX 4792837 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-897 2121 chrX 4827973 4827996 chrX 4835343 4835362 Stalker4 6 7370 8.5 4.5 6.5 0.8 7389 chrX 4827973 intergenic not near genes chrX 4831668 intergenic not near genes chrX 4835362 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-897 2122 chrX 4931347 4931377 chrX 4931441 4931470 12 91 22.0 18.5 20.2 0.6 123 chrX 4931347 intron CG44774 - chrX 4931408 intron CG44774 - chrX 4931470 intron CG44774 - chrX_12_4930001 chrX_4930001 RAL-897 2123 chrX 4990050 4990075 chrX 4997264 4997288 roo 6 7214 1.5 2.0 1.8 2.1 7238 chrX 4990050 intron CR44833 - chrX 4993669 intron CR44833 - chrX 4997288 intron CR44833 - chrX_6_4990001 chrX_4990001 RAL-897 2124 chrX 5096274 5096304 chrX 5103839 5103868 springer 6 7564 4.5 4.0 4.2 1.2 7594 chrX 5096274 intron,intron CG15465 +,rg + chrX 5100071 intron,intron CG15465 +,rg + chrX 5103868 intron,intron CG15465 +,rg + chrX_6_5100001 chrX_5100001 RAL-897 2125 chrX 5125897 5125928 chrX 5125973 5126005 23 75 6.5 3.0 4.8 4.0 108 chrX 5125897 intron,intron CG15465 +,rg + chrX 5125951 intron,intron CG15465 +,rg + chrX 5126005 intron,intron CG15465 +,rg + chrX_23_5125001 chrX_5125001 RAL-897 2126 chrX 5131399 5131430 chrX 5131477 5131508 5 75 5.0 3.5 4.2 1.0 109 chrX 5131399 intron,intron CG15465 +,rg + chrX 5131454 intron,intron CG15465 +,rg + chrX 5131508 intron,intron CG15465 +,rg + chrX_5_5130001 chrX_5130001 RAL-897 2127 chrX 5134797 5134826 chrX 5134898 5134927 9 101 6.0 5.0 5.5 1.4 130 chrX 5134797 intron,intron CG15465 +,rg + chrX 5134862 intron,intron CG15465 +,rg + chrX 5134927 intron,intron CG15465 +,rg + chrX_9_5130001 chrX_5130001 RAL-897 2128 chrX 5220391 5220418 chrX 5220632 5220641 9 237 0.5 5.0 2.8 2.4 250 chrX 5220391 intron,intron CG15465 +,rg + chrX 5220516 intron,intron CG15465 +,rg + chrX 5220641 intron,intron CG15465 +,rg + chrX_9_5220001 chrX_5220001 RAL-897 2129 chrX 5338710 5338739 chrX 5339963 5339985 jockey 8 1246 3.5 1.5 2.5 2.3 1275 chrX 5338710 intergenic not near genes chrX 5339348 intergenic not near genes chrX 5339985 intergenic SK + chrX_8_5335001 chrX_5335001 RAL-897 2130 chrX 5345032 5345062 chrX 5345218 5345248 9 183 4.0 4.0 4.0 1.8 216 chrX 5345032 intron SK + chrX 5345140 intron SK + chrX 5345248 intron SK + chrX_9_5345001 chrX_5345001 RAL-897 2131 chrX 5441987 5442016 chrX 5442095 5442124 6 104 2.0 2.0 2.0 2.0 137 chrX 5441987 intergenic not near genes chrX 5442056 intergenic not near genes chrX 5442124 intergenic not near genes chrX_6_5440001 chrX_5440001 RAL-897 2132 chrX 5473586 5473619 chrX 5473662 5473676 4 71 3.0 2.5 2.8 1.1 90 chrX 5473586 intron SPR + chrX 5473631 intron SPR + chrX 5473676 intron SPR + chrX_4_5470001 chrX_5470001 RAL-897 2133 chrX 5713999 5714033 chrX 5714156 5714190 10 156 3.5 2.0 2.8 2.6 191 chrX 5713999 intron CG33080 - chrX 5714094 intron CG33080 - chrX 5714190 intron CG33080 - chrX_10_5710001 chrX_5710001 RAL-897 2134 chrX 5726269 5726278 chrX 5726603 5726620 5 340 0.0 3.5 1.8 1.8 351 chrX 5726269 intron CG32758 - chrX 5726444 intron CG32758 - chrX 5726620 intron CG32758 - chrX_5_5725001 chrX_5725001 RAL-897 2135 chrX 5798869 5798886 chrX 5799031 5799048 10 162 4.5 6.0 5.2 1.6 179 chrX 5798869 intergenic not near genes chrX 5798958 intergenic not near genes chrX 5799048 intergenic not near genes chrX_10_5795001 chrX_5795001 RAL-897 2136 chrX 5848762 5848785 chrX 5848969 5848990 8 206 1.5 3.0 2.2 2.5 228 chrX 5848762 intergenic not near genes chrX 5848876 intergenic not near genes chrX 5848990 intergenic not near genes chrX_8_5845001 chrX_5845001 RAL-897 2137 chrX 5883812 5883841 chrX 5884053 5884082 pogo 8 240 1.5 4.0 2.8 2.1 270 chrX 5883812 intron CR45668 - chrX 5883947 intron CR45668 - chrX 5884082 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-897 2138 chrX 5884166 5884193 chrX 5884407 5884419 pogo 12 239 3.5 3.0 3.2 2.9 253 chrX 5884166 intron CR45668 - chrX 5884292 intron CR45668 - chrX 5884419 intron CR45668 - chrX_12_5880001 chrX_5880001 RAL-897 2139 chrX 5964434 5964469 chrX 5964515 5964550 8 80 3.0 4.5 3.8 1.7 116 chrX 5964434 intergenic fs(1)M3 - chrX 5964492 intergenic fs(1)M3 - chrX 5964550 intergenic fs(1)M3 - chrX_8_5960001 chrX_5960001 RAL-897 2140 chrX 6003291 6003312 chrX 6003371 6003393 11 79 0.0 8.5 4.2 2.1 102 chrX 6003291 intron CR44498 + chrX 6003342 intron CR44498 + chrX 6003393 intron CR44498 + chrX_11_6000001 chrX_6000001 RAL-897 2141 chrX 6037550 6037584 chrX 6037733 6037766 19 182 1.0 3.0 2.0 6.3 216 chrX 6037550 intron rux - chrX 6037658 intron rux - chrX 6037766 5` UTR rux - chrX_19_6035001 chrX_6035001 RAL-897 2142 chrX 6118696 6118732 chrX 6118778 6118814 11 81 2.0 4.5 3.2 2.6 118 chrX 6118696 intron Ca-alpha1T - chrX 6118755 intron Ca-alpha1T - chrX 6118814 intron Ca-alpha1T - chrX_11_6115001 chrX_6115001 RAL-897 2143 chrX 6171581 6171610 chrX 6179014 6179043 Quasimodo 11 7432 2.5 3.0 2.8 2.9 7462 chrX 6171581 intron Ca-alpha1T - chrX 6175312 intron Ca-alpha1T - chrX 6179043 intron Ca-alpha1T - chrX_11_6175001 chrX_6175001 RAL-897 2144 chrX 6203756 6203788 chrX 6203838 6203870 16 80 4.5 2.5 3.5 3.6 114 chrX 6203756 intergenic not near genes chrX 6203813 intergenic not near genes chrX 6203870 intergenic not near genes chrX_16_6200001 chrX_6200001 RAL-897 2145 chrX 6215345 6215369 chrX 6215428 6215452 10 83 3.0 4.0 3.5 2.2 107 chrX 6215345 intergenic not near genes chrX 6215398 intergenic not near genes chrX 6215452 intergenic not near genes chrX_10_6215001 chrX_6215001 RAL-897 2146 chrX 6306556 6306581 chrX 6306633 6306658 7 73 2.0 2.5 2.2 2.2 102 chrX 6306556 3` UTR CG3823 + chrX 6306607 3` UTR CG3823 + chrX 6306658 3` UTR CG3823 + chrX_7_6305001 chrX_6305001 RAL-897 2147 chrX 6315458 6315464 chrX 6315592 6315610 5 145 3.0 3.5 3.2 1.2 152 chrX 6315458 intron CG15894 + chrX 6315534 intron CG15894 + chrX 6315610 intron CG15894 + chrX_5_6315001 chrX_6315001 RAL-897 2148 chrX 6335214 6335244 chrX 6337719 6337754 Tirant 13 2509 0.5 7.5 4.0 2.6 2540 chrX 6335214 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_13_6335001 chrX_6335001 RAL-897 2149 chrX 6392870 6392899 chrX 6397633 6397651 Doc 9 4761 5.5 5.0 5.2 1.5 4781 chrX 6392870 intergenic not near genes chrX 6395260 intergenic not near genes chrX 6397651 intergenic not near genes chrX_9_6395001 chrX_6395001 RAL-897 2150 chrX 6562817 6562820 chrX 6571299 6571302 Tirant 5 8482 8.0 4.5 6.2 0.7 8485 chrX 6562817 intron CG34417 + chrX 6567060 intron CG34417 + chrX 6571302 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-897 2151 chrX 6562821 6562851 chrX 6571298 6571333 Tirant 17 8477 4.0 4.5 4.2 3.3 8512 chrX 6562821 intron CG34417 + chrX 6567077 intron CG34417 + chrX 6571333 intron CG34417 + chrX_17_6565001 chrX_6565001 RAL-897 2152 chrX 6792082 6792089 chrX 6792173 6792180 4 91 2.0 3.5 2.8 1.1 98 chrX 6792082 intron C3G - chrX 6792131 intron C3G - chrX 6792180 intron C3G - chrX_4_6790001 chrX_6790001 RAL-897 2153 chrX 6859563 6859575 chrX 6859976 6859988 5 413 4.0 0.0 2.0 1.7 425 chrX 6859563 intron CG14434 - chrX 6859776 intron CG14434 - chrX 6859988 intron CG14434 - chrX_5_6855001 chrX_6855001 RAL-897 2154 chrX 6897598 6897707 chrX 6897645 6897817 8 100 2.0 2.5 2.2 2.5 219 chrX 6897598 intergenic not near genes chrX 6897708 intergenic not near genes chrX 6897817 intergenic not near genes chrX_8_6895001 chrX_6895001 RAL-897 2155 chrX 6922836 6922856 chrX 6923027 6923046 7 190 3.0 2.0 2.5 2.0 210 chrX 6922836 intron CG14431 + chrX 6922941 intron CG14431 + chrX 6923046 intron CG14431 + chrX_7_6920001 chrX_6920001 RAL-897 2156 chrX 6988653 6988688 chrX 6988727 6988764 13 76 2.5 3.0 2.8 3.4 111 chrX 6988653 intron ogre - chrX 6988708 intron ogre - chrX 6988764 intron ogre - chrX_13_6985001 chrX_6985001 RAL-897 2157 chrX 7023603 7023634 chrX 7030993 7031014 Tabor 11 7388 6.0 2.0 4.0 2.2 7411 chrX 7023603 intron CG12541 - chrX 7027308 intron CG12541 - chrX 7031014 intron CG12541 - chrX_11_7025001 chrX_7025001 RAL-897 2158 chrX 7069802 7069831 chrX 7069881 7069910 9 80 4.0 3.5 3.8 1.9 108 chrX 7069802 5` UTR CG4607 + chrX 7069856 5` UTR CG4607 + chrX 7069910 5` UTR CG4607 + chrX_9_7065001 chrX_7065001 RAL-897 2159 chrX 7113726 7113757 chrX 7113804 7113836 12 77 4.5 1.0 2.8 3.2 110 chrX 7113726 intergenic not near genes chrX 7113781 intergenic not near genes chrX 7113836 intergenic not near genes chrX_12_7110001 chrX_7110001 RAL-897 2160 chrX 7125244 7125278 chrX 7134403 7134437 roo 13 9158 1.0 3.5 2.2 4.1 9193 chrX 7125244 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134437 intergenic not near genes chrX_13_7125001 chrX_7125001 RAL-897 2161 chrX 7294519 7294541 chrX 7294613 7294639 8 96 1.5 6.0 3.8 1.7 120 chrX 7294519 intron,intron CR44357 -,CG1677 - chrX 7294579 intron,intron CR44357 -,CG1677 - chrX 7294639 intron,intron CR44357 -,CG1677 - chrX_8_7290001 chrX_7290001 RAL-897 2162 chrX 7413110 7413144 chrX 7413519 7413554 17 409 2.0 2.0 2.0 5.7 444 chrX 7413110 exon CG42704 + chrX 7413332 intergenic CG42704 + chrX 7413554 intergenic CG42704 +,CG42705 + chrX_17_7410001 chrX_7410001 RAL-897 2163 chrX 7507355 7507368 chrX 7507443 7507446 7 87 6.0 4.5 5.2 1.1 91 chrX 7507355 intergenic not near genes chrX 7507400 intergenic not near genes chrX 7507446 intergenic not near genes chrX_7_7505001 chrX_7505001 RAL-897 2164 chrX 7593714 7593726 chrX 7593797 7593809 9 83 4.0 3.0 3.5 2.0 95 chrX 7593714 intergenic not near genes chrX 7593762 intergenic not near genes chrX 7593809 intergenic not near genes chrX_9_7590001 chrX_7590001 RAL-897 2165 chrX 7702912 7702936 chrX 7703338 7703361 jockey 5 433 3.5 7.5 5.5 0.8 449 chrX 7702912 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703361 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-897 2166 chrX 7832433 7832451 chrX 7832522 7832540 4 89 2.5 2.0 2.2 1.2 107 chrX 7832433 intron CG1402 + chrX 7832486 intron CG1402 + chrX 7832540 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-897 2167 chrX 7881851 7881877 chrX 7881933 7881957 4 82 2.5 0.5 1.5 1.6 106 chrX 7881851 intergenic Ir7f -,Ir7e - chrX 7881904 intergenic Ir7f -,Ir7e - chrX 7881957 3` UTR Ir7f - chrX_4_7880001 chrX_7880001 RAL-897 2168 chrX 7960879 7960906 chrX 7960968 7960994 5 89 2.0 3.5 2.8 1.3 115 chrX 7960879 intron,5` UTR sws -,CR45620 + chrX 7960936 intron sws - chrX 7960994 intron sws - chrX_5_7960001 chrX_7960001 RAL-897 2169 chrX 8031422 8031439 chrX 8035730 8035735 Juan 5 4306 4.5 1.0 2.8 1.3 4313 chrX 8031422 intergenic not near genes chrX 8033578 intergenic not near genes chrX 8035735 intergenic CG2233 - chrX_5_8030001 chrX_8030001 RAL-897 2170 chrX 8092286 8092314 chrX 8092371 8092399 11 81 3.0 2.5 2.8 2.9 113 chrX 8092286 intron Ubc-E2H - chrX 8092342 intron Ubc-E2H - chrX 8092399 intron Ubc-E2H - chrX_11_8090001 chrX_8090001 RAL-897 2171 chrX 8378256 8378270 chrX 8378331 8378353 5 80 2.0 4.0 3.0 1.2 97 chrX 8378256 intergenic not near genes chrX 8378304 intergenic not near genes chrX 8378353 intergenic not near genes chrX_5_8375001 chrX_8375001 RAL-897 2172 chrX 8421461 8421476 chrX 8421553 8421568 7 92 7.0 3.0 5.0 1.2 107 chrX 8421461 intron Trf2 + chrX 8421514 intron Trf2 + chrX 8421568 intron Trf2 + chrX_7_8420001 chrX_8420001 RAL-897 2173 chrX 8421479 8421492 chrX 8421552 8421584 9 89 4.0 3.0 3.5 2.0 105 chrX 8421479 intron Trf2 + chrX 8421532 intron Trf2 + chrX 8421584 intron Trf2 + chrX_9_8420001 chrX_8420001 RAL-897 2174 chrX 8536760 8536779 chrX 8536836 8536843 6 74 5.0 6.0 5.5 0.9 83 chrX 8536760 intron Nrg + chrX 8536802 intron Nrg + chrX 8536843 intron Nrg + chrX_6_8535001 chrX_8535001 RAL-897 2175 chrX 8629678 8629710 chrX 8629896 8629911 8 215 6.5 5.0 5.8 1.2 233 chrX 8629678 intergenic oc - chrX 8629794 intergenic oc - chrX 8629911 intergenic oc - chrX_8_8625001 chrX_8625001 RAL-897 2176 chrX 8922326 8922361 chrX 8922760 8922795 jockey 13 433 3.0 4.0 3.5 2.9 469 chrX 8922326 intron rdgA + chrX 8922560 intron rdgA + chrX 8922795 intron rdgA + chrX_13_8920001 chrX_8920001 RAL-897 2177 chrX 8948763 8948782 chrX 8956272 8956292 roo 5 7510 4.0 2.5 3.2 1.2 7529 chrX 8948763 intron rdgA + chrX 8952528 intron rdgA + chrX 8956292 intron rdgA + chrX_5_8950001 chrX_8950001 RAL-897 2178 chrX 8948785 8948792 chrX 8956271 8956302 roo 5 7505 4.0 2.0 3.0 1.2 7517 chrX 8948785 intron rdgA + chrX 8952544 intron rdgA + chrX 8956302 intron rdgA + chrX_5_8950001 chrX_8950001 RAL-897 2179 chrX 9129498 9129506 chrX 9129562 9129592 8 82 3.5 7.5 5.5 1.2 94 chrX 9129498 intron fend - chrX 9129545 intron fend - chrX 9129592 intron fend - chrX_8_9125001 chrX_9125001 RAL-897 2180 chrX 9508132 9508167 chrX 9509649 9509685 jockey 19 1517 1.5 3.0 2.2 5.9 1553 chrX 9508132 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509685 intron CG32700 - chrX_19_9505001 chrX_9505001 RAL-897 2181 chrX 9575803 9575823 chrX 9576126 9576143 mdg3 9 323 3.5 7.5 5.5 1.4 340 chrX 9575803 intron,exon CG32699 -,CG42395 - chrX 9575973 intron,intron CG32699 -,CG42395 - chrX 9576143 intron,5` UTR CG32699 -,CG42395 - chrX_9_9575001 chrX_9575001 RAL-897 2182 chrX 10088053 10088089 chrX 10088574 10088610 11 518 2.0 4.0 3.0 2.8 557 chrX 10088053 intron RhoU + chrX 10088332 intron RhoU + chrX 10088610 intron RhoU + chrX_11_10085001 chrX_10085001 RAL-897 2183 chrX 10138223 10138245 chrX 10145727 10145748 412 8 7503 2.5 2.0 2.2 2.5 7525 chrX 10138223 intron,intron RhoU +,CR44894 - chrX 10141986 intron,intron RhoU +,CR44894 - chrX 10145748 intron,intron RhoU +,CR44894 - chrX_8_10140001 chrX_10140001 RAL-897 2184 chrX 10367192 10367205 chrX 10367300 10367314 9 108 4.0 3.0 3.5 2.0 122 chrX 10367192 exon CG32679 - chrX 10367253 intron CG32679 - chrX 10367314 intron CG32679 - chrX_9_10365001 chrX_10365001 RAL-897 2185 chrX 10428867 10428888 chrX 10428956 10428978 6 90 1.0 1.5 1.2 2.7 111 chrX 10428867 intron CG32683 - chrX 10428922 intron CG32683 - chrX 10428978 intron CG32683 - chrX_6_10425001 chrX_10425001 RAL-897 2186 chrX 10446685 10446715 chrX 10446766 10446797 5 82 3.5 3.5 3.5 1.1 112 chrX 10446685 intron CG32683 - chrX 10446741 intron CG32683 - chrX 10446797 intron CG32683 - chrX_5_10445001 chrX_10445001 RAL-897 2187 chrX 10550332 10550366 chrX 10550410 10550444 7 77 2.0 1.0 1.5 2.8 112 chrX 10550332 intron spri - chrX 10550388 intron spri - chrX 10550444 intron spri - chrX_7_10550001 chrX_10550001 RAL-897 2188 chrX 10550855 10550889 chrX 10552322 10552356 hobo 13 1467 4.0 1.5 2.8 3.4 1501 chrX 10550855 intron spri - chrX 10551606 intron spri - chrX 10552356 intron spri - chrX_13_10550001 chrX_10550001 RAL-897 2189 chrX 10686055 10686082 chrX 10691192 10691219 roo 5 5137 1.5 5.0 3.2 1.2 5164 chrX 10686055 intron X11Lbeta + chrX 10688637 intron X11Lbeta + chrX 10691219 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-897 2190 chrX 10719125 10719151 chrX 10719209 10719235 10 84 0.0 2.5 1.2 4.5 110 chrX 10719125 intron CG32676 - chrX 10719180 intron CG32676 - chrX 10719235 intron CG32676 - chrX_10_10715001 chrX_10715001 RAL-897 2191 chrX 10772686 10772696 chrX 10772769 10772779 Tirant 4 83 5.0 5.0 5.0 0.7 93 chrX 10772686 intron CG15211 + chrX 10772732 intron CG15211 + chrX 10772779 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-897 2192 chrX 10803033 10803048 chrX 10803120 10803132 10 85 6.5 6.5 6.5 1.3 99 chrX 10803033 intron Imp - chrX 10803082 intron Imp - chrX 10803132 intron Imp - chrX_10_10800001 chrX_10800001 RAL-897 2193 chrX 11096002 11096029 chrX 11103104 11103129 HMS-Beagle 6 7100 1.0 4.5 2.8 1.6 7127 chrX 11096002 intergenic not near genes chrX 11099566 intergenic not near genes chrX 11103129 intron CG42249 + chrX_6_11095001 chrX_11095001 RAL-897 2194 chrX 11141987 11142067 chrX 11142062 11142143 5 75 0.0 0.0 0.0 5.0 156 chrX 11141987 intergenic CG15199 - chrX 11142065 intergenic CG15199 -,CG15202 + chrX 11142143 intergenic CG15199 -,CG15202 + chrX_5_11140001 chrX_11140001 RAL-897 2195 chrX 11184254 11184272 chrX 11189330 11189348 flea 6 5076 5.5 2.0 3.8 1.2 5094 chrX 11184254 intergenic not near genes chrX 11186801 intergenic not near genes chrX 11189348 intergenic not near genes chrX_6_11185001 chrX_11185001 RAL-897 2196 chrX 11268560 11268596 chrX 11270053 11270087 hopper2 15 1490 3.5 5.5 4.5 2.7 1527 chrX 11268560 intron CG44422 - chrX 11269324 intron CG44422 - chrX 11270087 intron CG44422 - chrX_15_11265001 chrX_11265001 RAL-897 2197 chrX 11312057 11312093 chrX 11319410 11319419 Stalker2 12 7349 3.5 1.5 2.5 3.4 7362 chrX 11312057 intergenic not near genes chrX 11315738 intergenic not near genes chrX 11319419 intergenic not near genes chrX_12_11315001 chrX_11315001 RAL-897 2198 chrX 11633422 11633447 chrX 11640473 11640501 297 9 7054 4.5 5.5 5.0 1.5 7079 chrX 11633422 intron Ptp10D + chrX 11636962 intron Ptp10D + chrX 11640501 intron Ptp10D + chrX_9_11635001 chrX_11635001 RAL-897 2199 chrX 11719870 11719901 chrX 11719950 11719980 4 80 1.5 1.0 1.2 1.8 110 chrX 11719870 3` UTR prtp + chrX 11719925 intergenic prtp +,Tango10 + chrX 11719980 intergenic prtp +,Tango10 + chrX_4_11715001 chrX_11715001 RAL-897 2200 chrX 11839038 11839067 chrX 11839283 11839315 11 247 0.5 4.0 2.2 3.4 277 chrX 11839038 intergenic not near genes chrX 11839176 intergenic Cyp28c1 + chrX 11839315 intergenic Cyp28c1 + chrX_11_11835001 chrX_11835001 RAL-897 2201 chrX 11933925 11933938 chrX 11934017 11934033 5 93 3.5 3.5 3.5 1.1 108 chrX 11933925 3` UTR cac - chrX 11933979 3` UTR cac - chrX 11934033 3` UTR cac - chrX_5_11930001 chrX_11930001 RAL-897 2202 chrX 12094047 12094067 chrX 12094125 12094158 8 85 1.5 3.0 2.2 2.5 111 chrX 12094047 intron,intron CR43960 +,Ten-a + chrX 12094102 intron,intron CR43960 +,Ten-a + chrX 12094158 intron,intron CR43960 +,Ten-a + chrX_8_12090001 chrX_12090001 RAL-897 2203 chrX 12168136 12168160 chrX 12173578 12173600 I-element 4 5437 3.0 5.0 4.0 0.8 5464 chrX 12168136 intron Ten-a + chrX 12170868 intron Ten-a + chrX 12173600 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-897 2204 chrX 12176542 12176545 chrX 12176955 12176974 5 424 4.5 6.5 5.5 0.8 432 chrX 12176542 intron,3` UTR Ten-a +,CG1924 - chrX 12176758 intron,3` UTR Ten-a +,CG1924 - chrX 12176974 intron,exon Ten-a +,CG1924 - chrX_5_12175001 chrX_12175001 RAL-897 2205 chrX 12350791 12350803 chrX 12350866 12350871 4 76 5.0 0.5 2.8 1.1 80 chrX 12350791 intergenic not near genes chrX 12350831 intergenic not near genes chrX 12350871 intergenic not near genes chrX_4_12350001 chrX_12350001 RAL-897 2206 chrX 12375491 12375513 chrX 12375589 12375611 10 96 2.0 4.0 3.0 2.5 120 chrX 12375491 intergenic Ir11a - chrX 12375551 intergenic Ir11a - chrX 12375611 exon Ir11a - chrX_10_12375001 chrX_12375001 RAL-897 2207 chrX 12381891 12381903 chrX 12385793 12385805 flea 5 3902 0.5 9.5 5.0 0.8 3914 chrX 12381891 intergenic not near genes chrX 12383848 intergenic not near genes chrX 12385805 intergenic not near genes chrX_5_12380001 chrX_12380001 RAL-897 2208 chrX 12442083 12442114 chrX 12442164 12442196 4 80 0.5 0.0 0.2 3.3 113 chrX 12442083 intron Pkcdelta + chrX 12442140 intron Pkcdelta + chrX 12442196 intron Pkcdelta + chrX_4_12440001 chrX_12440001 RAL-897 2209 chrX 12533816 12533823 chrX 12533892 12533899 4 76 0.0 8.0 4.0 0.8 83 chrX 12533816 intron CG43921 - chrX 12533858 intron CG43921 - chrX 12533899 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-897 2210 chrX 12557152 12557165 chrX 12557228 12557241 5 76 8.0 8.0 8.0 0.6 89 chrX 12557152 intron CG43921 - chrX 12557196 intron CG43921 - chrX 12557241 intron CG43921 - chrX_5_12555001 chrX_12555001 RAL-897 2211 chrX 12752281 12752307 chrX 12752368 12752394 16 87 3.5 4.5 4.0 3.2 113 chrX 12752281 5` UTR CR44619 + chrX 12752338 5` UTR CR44619 + chrX 12752394 5` UTR CR44619 + chrX_16_12750001 chrX_12750001 RAL-897 2212 chrX 12805335 12805368 chrX 12805502 12805536 12 166 8.0 3.5 5.8 1.8 201 chrX 12805335 intron Pde9 - chrX 12805436 intron Pde9 - chrX 12805536 intron Pde9 - chrX_12_12805001 chrX_12805001 RAL-897 2213 chrX 12953903 12953916 chrX 12954041 12954054 5 138 0.0 0.5 0.2 4.2 151 chrX 12953903 intron hec - chrX 12953978 intron hec - chrX 12954054 intron hec - chrX_5_12950001 chrX_12950001 RAL-897 2214 chrX 12996414 12996432 chrX 12996515 12996530 4 100 3.5 8.0 5.8 0.6 116 chrX 12996414 intron rad + chrX 12996472 intron rad + chrX 12996530 intron rad + chrX_4_12995001 chrX_12995001 RAL-897 2215 chrX 13314423 13314431 chrX 13314516 13314521 4 93 5.0 0.0 2.5 1.1 98 chrX 13314423 intron IP3K2 + chrX 13314472 intron IP3K2 + chrX 13314521 intron IP3K2 + chrX_4_13310001 chrX_13310001 RAL-897 2216 chrX 13374843 13374870 chrX 13374921 13374950 8 78 1.5 0.0 0.8 4.4 107 chrX 13374843 intron CG1640 + chrX 13374896 intron CG1640 + chrX 13374950 intron CG1640 + chrX_8_13370001 chrX_13370001 RAL-897 2217 chrX 13401486 13401511 chrX 13401838 13401863 jockey 5 352 2.0 3.5 2.8 1.3 377 chrX 13401486 intergenic CG1673 +,CG12725 - chrX 13401674 intergenic CG12725 -,CG1673 + chrX 13401863 3` UTR CG12725 - chrX_5_13400001 chrX_13400001 RAL-897 2218 chrX 13429480 13429490 chrX 13430628 13430639 jockey 4 1148 0.0 5.5 2.8 1.1 1159 chrX 13429480 intergenic not near genes chrX 13430060 intergenic not near genes chrX 13430639 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-897 2219 chrX 13442142 13442170 chrX 13442232 13442261 5 86 1.5 5.0 3.2 1.2 119 chrX 13442142 intergenic not near genes chrX 13442202 intergenic not near genes chrX 13442261 intergenic not near genes chrX_5_13440001 chrX_13440001 RAL-897 2220 chrX 13463646 13463670 chrX 13469222 13469247 mdg3 8 5576 2.5 1.0 1.8 2.9 5601 chrX 13463646 intron Neto + chrX 13466446 intron Neto + chrX 13469247 intron Neto + chrX_8_13465001 chrX_13465001 RAL-897 2221 chrX 13507310 13507327 chrX 13507391 13507408 6 79 5.0 5.5 5.2 1.0 98 chrX 13507310 intron Neto + chrX 13507359 intron Neto + chrX 13507408 intron Neto + chrX_6_13505001 chrX_13505001 RAL-897 2222 chrX 13807868 13807899 chrX 13807940 13807975 10 75 1.5 2.5 2.0 3.3 107 chrX 13807868 intron inaE + chrX 13807922 intron inaE + chrX 13807975 intron inaE + chrX_10_13805001 chrX_13805001 RAL-897 2223 chrX 13908805 13908810 chrX 13908881 13908887 4 77 2.5 9.0 5.8 0.6 82 chrX 13908805 intron mamo - chrX 13908846 intron mamo - chrX 13908887 intron mamo - chrX_4_13905001 chrX_13905001 RAL-897 2224 chrX 13937977 13938008 chrX 13941247 13941278 I-element 8 3271 2.0 0.5 1.2 3.6 3301 chrX 13937977 intron mamo - chrX 13939628 intron mamo - chrX 13941278 intron mamo - chrX_8_13935001 chrX_13935001 RAL-897 2225 chrX 14105025 14105053 chrX 14114176 14114186 roo 14 9148 7.0 5.0 6.0 2.0 9161 chrX 14105025 intergenic not near genes chrX 14109606 intergenic not near genes chrX 14114186 5` UTR CR44657 + chrX_14_14105001 chrX_14105001 RAL-897 2226 chrX 14157596 14157618 chrX 14163249 14163275 297 5 5656 0.5 0.5 0.5 3.3 5679 chrX 14157596 intergenic not near genes chrX 14160436 intergenic not near genes chrX 14163275 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-897 2227 chrX 14405020 14405027 chrX 14405097 14405105 4 78 4.0 2.0 3.0 1.0 85 chrX 14405020 intron dpr8 + chrX 14405062 intron dpr8 + chrX 14405105 intron dpr8 + chrX_4_14405001 chrX_14405001 RAL-897 2228 chrX 14500504 14500536 chrX 14500605 14500636 8 98 4.0 6.0 5.0 1.3 132 chrX 14500504 intergenic not near genes chrX 14500570 intergenic not near genes chrX 14500636 intergenic not near genes chrX_8_14500001 chrX_14500001 RAL-897 2229 chrX 14597734 14597747 chrX 14597811 14597817 4 75 3.0 6.0 4.5 0.7 83 chrX 14597734 intron CG9413 - chrX 14597776 intron CG9413 - chrX 14597817 intron CG9413 - chrX_4_14595001 chrX_14595001 RAL-897 2230 chrX 14636459 14636493 chrX 14641900 14641934 I-element 15 5436 5.5 2.5 4.0 3.0 5475 chrX 14636459 intron NetA - chrX 14639196 intron NetA - chrX 14641934 intron NetA - chrX_15_14635001 chrX_14635001 RAL-897 2231 chrX 14714043 14714061 chrX 14714125 14714143 4 82 0.5 4.0 2.2 1.2 100 chrX 14714043 intron NetB - chrX 14714093 intron NetB - chrX 14714143 intron NetB - chrX_4_14710001 chrX_14710001 RAL-897 2232 chrX 14778032 14778049 chrX 14782829 14782846 Doc 5 4797 3.0 0.5 1.8 1.8 4814 chrX 14778032 intergenic CG5347 + chrX 14780439 intergenic not near genes chrX 14782846 intergenic Ag5r2 - chrX_5_14780001 chrX_14780001 RAL-897 2233 chrX 14818777 14818797 chrX 14823980 14823997 copia 11 5202 4.5 3.5 4.0 2.2 5220 chrX 14818777 intron rut - chrX 14821387 intron rut - chrX 14823997 intron rut - chrX_11_14820001 chrX_14820001 RAL-897 2234 chrX 14840358 14840383 chrX 14840837 14840856 6 478 4.0 4.0 4.0 1.2 498 chrX 14840358 intron Flo2 + chrX 14840607 intron Flo2 + chrX 14840856 intron Flo2 + chrX_6_14840001 chrX_14840001 RAL-897 2235 chrX 14936860 14936888 chrX 14946117 14946144 roo 11 9257 2.5 3.5 3.0 2.8 9284 chrX 14936860 intron pdgy - chrX 14941502 intron pdgy - chrX 14946144 intron pdgy - chrX_11_14940001 chrX_14940001 RAL-897 2236 chrX 14968089 14968100 chrX 14968168 14968179 6 79 2.0 7.5 4.8 1.0 90 chrX 14968089 intron eag + chrX 14968134 intron eag + chrX 14968179 intron eag + chrX_6_14965001 chrX_14965001 RAL-897 2237 chrX 15248797 15248806 chrX 15249093 15249102 5 296 7.0 2.0 4.5 0.9 305 chrX 15248797 intergenic not near genes chrX 15248950 intergenic not near genes chrX 15249102 intergenic not near genes chrX_5_15245001 chrX_15245001 RAL-897 2238 chrX 15248810 15248824 chrX 15249091 15249120 7 292 3.5 2.0 2.8 1.8 310 chrX 15248810 intergenic not near genes chrX 15248965 intergenic not near genes chrX 15249120 intergenic not near genes chrX_7_15245001 chrX_15245001 RAL-897 2239 chrX 15271278 15271310 chrX 15271370 15271404 13 90 5.5 3.5 4.5 2.4 126 chrX 15271278 3` UTR CG9106 - chrX 15271341 3` UTR CG9106 - chrX 15271404 exon CG9106 - chrX_13_15270001 chrX_15270001 RAL-897 2240 chrX 15277636 15277667 chrX 15277721 15277750 11 84 0.5 1.5 1.0 5.5 114 chrX 15277636 intergenic not near genes chrX 15277693 intergenic not near genes chrX 15277750 intergenic not near genes chrX_11_15275001 chrX_15275001 RAL-897 2241 chrX 15358317 15358341 chrX 15358405 15358429 4 88 0.0 2.0 1.0 2.0 112 chrX 15358317 intron acj6 - chrX 15358373 intron acj6 - chrX 15358429 intron acj6 - chrX_4_15355001 chrX_15355001 RAL-897 2242 chrX 15413051 15413085 chrX 15417353 15417360 Juan 10 4297 6.5 3.0 4.8 1.7 4309 chrX 15413051 intron Cngl - chrX 15415206 intron Cngl - chrX 15417360 intron Cngl - chrX_10_15415001 chrX_15415001 RAL-897 2243 chrX 15435692 15435705 chrX 15436123 15436138 rover 6 432 3.0 3.5 3.2 1.4 446 chrX 15435692 intron Cngl - chrX 15435915 intron Cngl - chrX 15436138 intron Cngl - chrX_6_15435001 chrX_15435001 RAL-897 2244 chrX 15528541 15528566 chrX 15528619 15528644 8 78 5.5 6.0 5.8 1.2 103 chrX 15528541 intron Ac13E - chrX 15528592 intron Ac13E - chrX 15528644 intron Ac13E - chrX_8_15525001 chrX_15525001 RAL-897 2245 chrX 15543272 15543294 chrX 15543350 15543376 4 80 3.0 4.5 3.8 0.8 104 chrX 15543272 intron Ac13E - chrX 15543324 intron Ac13E - chrX 15543376 intron Ac13E - chrX_4_15540001 chrX_15540001 RAL-897 2246 chrX 15589430 15589507 chrX 15589609 15589674 6 177 0.5 0.5 0.5 4.0 244 chrX 15589430 intron CG9220 - chrX 15589552 intron CG9220 - chrX 15589674 exon CG9220 - chrX_6_15585001 chrX_15585001 RAL-897 2247 chrX 15671205 15671210 chrX 15671292 15671296 4 86 3.0 0.0 1.5 1.6 91 chrX 15671205 intergenic CG15646 - chrX 15671250 intergenic CG15646 - chrX 15671296 intergenic CG15646 - chrX_4_15670001 chrX_15670001 RAL-897 2248 chrX 15678050 15678065 chrX 15678122 15678142 6 74 2.0 7.5 4.8 1.0 92 chrX 15678050 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678142 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-897 2249 chrX 15726408 15726432 chrX 15726484 15726513 9 79 3.5 1.5 2.5 2.6 105 chrX 15726408 exon CG8184 + chrX 15726460 intron CG8184 + chrX 15726513 intron CG8184 + chrX_9_15725001 chrX_15725001 RAL-897 2250 chrX 15898445 15898460 chrX 15898597 15898613 4 153 1.0 1.0 1.0 2.0 168 chrX 15898445 intron shi + chrX 15898529 intron shi + chrX 15898613 intron shi + chrX_4_15895001 chrX_15895001 RAL-897 2251 chrX 16295527 16295547 chrX 16295611 16295631 6 84 0.5 0.0 0.2 5.0 104 chrX 16295527 intron CG9911 - chrX 16295579 intron CG9911 - chrX 16295631 intron CG9911 - chrX_6_16295001 chrX_16295001 RAL-897 2252 chrX 16355275 16355291 chrX 16355435 16355452 4 161 3.0 0.5 1.8 1.4 177 chrX 16355275 3` UTR sl + chrX 16355364 3` UTR sl + chrX 16355452 3` UTR sl + chrX_4_16355001 chrX_16355001 RAL-897 2253 chrX 16364984 16365005 chrX 16365063 16365087 5 80 1.0 3.5 2.2 1.6 103 chrX 16364984 intron nonA + chrX 16365036 intron nonA + chrX 16365087 intron nonA + chrX_5_16365001 chrX_16365001 RAL-897 2254 chrX 16492645 16492672 chrX 16498222 16498249 mdg3 8 5577 3.5 1.0 2.2 2.5 5604 chrX 16492645 intron para - chrX 16495447 intron para - chrX 16498249 intron para - chrX_8_16495001 chrX_16495001 RAL-897 2255 chrX 16570871 16570903 chrX 16570951 16570978 5 78 1.5 0.5 1.0 2.5 107 chrX 16570871 intron CanA-14F - chrX 16570924 intron CanA-14F - chrX 16570978 intron CanA-14F - chrX_5_16570001 chrX_16570001 RAL-897 2256 chrX 16648125 16648136 chrX 16648210 16648221 5 85 6.5 15.0 10.8 0.4 96 chrX 16648125 3` UTR mthl1 + chrX 16648173 3` UTR mthl1 + chrX 16648221 3` UTR mthl1 + chrX_5_16645001 chrX_16645001 RAL-897 2257 chrX 16681634 16681660 chrX 16681710 16681736 7 76 2.5 1.5 2.0 2.3 102 chrX 16681634 3` UTR,intron sing +,Axs - chrX 16681685 3` UTR,intron sing +,Axs - chrX 16681736 3` UTR,intron sing +,Axs - chrX_7_16680001 chrX_16680001 RAL-897 2258 chrX 16689623 16689655 chrX 16689708 16689730 15 76 3.5 3.5 3.5 3.3 107 chrX 16689623 intron Sep4 - chrX 16689676 intron Sep4 - chrX 16689730 intron Sep4 - chrX_15_16685001 chrX_16685001 RAL-897 2259 chrX 16690451 16690473 chrX 16690529 16690552 10 78 4.5 2.5 3.5 2.2 101 chrX 16690451 intron Sep4 - chrX 16690502 intron Sep4 - chrX 16690552 intron Sep4 - chrX_10_16690001 chrX_16690001 RAL-897 2260 chrX 16870089 16870098 chrX 16870165 16870181 4 81 1.0 1.0 1.0 2.0 92 chrX 16870089 intron CG13003 - chrX 16870135 intron CG13003 - chrX 16870181 intron CG13003 - chrX_4_16870001 chrX_16870001 RAL-897 2261 chrX 17011971 17011991 chrX 17012054 17012073 10 82 2.5 4.5 3.5 2.2 102 chrX 17011971 intron CG45002 - chrX 17012022 intron CG45002 - chrX 17012073 intron CG45002 - chrX_10_17010001 chrX_17010001 RAL-897 2262 chrX 17195208 17195236 chrX 17200290 17200322 flea 6 5084 3.5 2.0 2.8 1.6 5114 chrX 17195208 3` UTR baz + chrX 17197765 3` UTR baz + chrX 17200322 3` UTR baz + chrX_6_17195001 chrX_17195001 RAL-897 2263 chrX 17217672 17217704 chrX 17217754 17217786 19 77 2.0 3.0 2.5 5.4 114 chrX 17217672 intergenic CG5162 + chrX 17217729 intergenic CG5162 + chrX 17217786 intergenic CG5162 + chrX_19_17215001 chrX_17215001 RAL-897 2264 chrX 17221832 17221851 chrX 17221914 17221937 6 83 1.5 1.5 1.5 2.4 105 chrX 17221832 intron CG5172 + chrX 17221884 intron CG5172 + chrX 17221937 intron CG5172 + chrX_6_17220001 chrX_17220001 RAL-897 2265 chrX 17282878 17282907 chrX 17282955 17282983 12 75 5.5 0.0 2.8 3.2 105 chrX 17282878 intron CG5445 + chrX 17282930 5` UTR CG5445 + chrX 17282983 intron CG5445 + chrX_12_17280001 chrX_17280001 RAL-897 2266 chrX 17335692 17335728 chrX 17335784 17335817 11 90 5.5 4.0 4.8 1.9 125 chrX 17335692 intergenic not near genes chrX 17335754 intergenic not near genes chrX 17335817 intergenic not near genes chrX_11_17335001 chrX_17335001 RAL-897 2267 chrX 17352591 17352619 chrX 17352694 17352722 11 101 0.0 3.0 1.5 4.4 131 chrX 17352591 intergenic not near genes chrX 17352656 intergenic not near genes chrX 17352722 intergenic not near genes chrX_11_17350001 chrX_17350001 RAL-897 2268 chrX 17435769 17435783 chrX 17435826 17435859 10 74 0.5 2.0 1.2 4.5 90 chrX 17435769 intron CG12994 - chrX 17435814 intron CG12994 - chrX 17435859 intron CG12994 - chrX_10_17435001 chrX_17435001 RAL-897 2269 chrX 17536853 17536871 chrX 17536936 17536954 5 83 2.0 2.5 2.2 1.6 101 chrX 17536853 intron CG43658 - chrX 17536904 intron CG43658 - chrX 17536954 intron CG43658 - chrX_5_17535001 chrX_17535001 RAL-897 2270 chrX 17556962 17556977 chrX 17557446 17557449 mdg1 4 480 3.5 6.0 4.8 0.7 487 chrX 17556962 intron CG43658 - chrX 17557206 intron CG43658 - chrX 17557449 intron CG43658 - chrX_4_17555001 chrX_17555001 RAL-897 2271 chrX 17708846 17708859 chrX 17708925 17708938 5 79 0.5 4.5 2.5 1.4 92 chrX 17708846 intron CG8173 - chrX 17708892 intron CG8173 - chrX 17708938 intron CG8173 - chrX_5_17705001 chrX_17705001 RAL-897 2272 chrX 17792953 17792976 chrX 17796251 17796274 flea 7 3296 5.0 5.0 5.0 1.2 3321 chrX 17792953 intron OdsH + chrX 17794614 intron OdsH + chrX 17796274 intron OdsH + chrX_7_17790001 chrX_17790001 RAL-897 2273 chrX 18020813 18020843 chrX 18020900 18020930 5 87 2.5 1.0 1.8 1.8 117 chrX 18020813 intron Sh - chrX 18020872 intron Sh - chrX 18020930 intron Sh - chrX_5_18020001 chrX_18020001 RAL-897 2274 chrX 18122819 18122847 chrX 18122893 18122923 9 74 3.5 2.5 3.0 2.2 104 chrX 18122819 5` UTR CR45606 + chrX 18122871 5` UTR CR45606 + chrX 18122923 intergenic CR45606 + chrX_9_18120001 chrX_18120001 RAL-897 2275 chrX 18194066 18194094 chrX 18194600 18194629 BS 17 535 0.5 5.0 2.8 4.5 563 chrX 18194066 intron Frq2 + chrX 18194348 intron Frq2 + chrX 18194629 intron Frq2 + chrX_17_18190001 chrX_18190001 RAL-897 2276 chrX 18270054 18270069 chrX 18270133 18270155 8 85 6.0 4.5 5.2 1.3 101 chrX 18270054 intergenic not near genes chrX 18270104 intergenic not near genes chrX 18270155 intergenic not near genes chrX_8_18270001 chrX_18270001 RAL-897 2277 chrX 18429505 18429527 chrX 18434816 18434838 Transpac 7 5311 2.0 2.5 2.2 2.2 5333 chrX 18429505 intergenic not near genes chrX 18432172 intergenic not near genes chrX 18434838 intergenic not near genes chrX_7_18430001 chrX_18430001 RAL-897 2278 chrX 18543109 18543116 chrX 18543192 18543199 5 83 3.5 3.0 3.2 1.2 90 chrX 18543109 intron Bx + chrX 18543154 intron Bx + chrX 18543199 intron Bx + chrX_5_18540001 chrX_18540001 RAL-897 2279 chrX 18558777 18558806 chrX 18558858 18558888 10 81 0.5 1.0 0.8 5.6 111 chrX 18558777 intron Bx + chrX 18558832 intron Bx + chrX 18558888 intron Bx + chrX_10_18555001 chrX_18555001 RAL-897 2280 chrX 18645014 18645048 chrX 18645111 18645132 13 93 4.0 2.5 3.2 3.1 118 chrX 18645014 intron Rip11 - chrX 18645073 intron Rip11 - chrX 18645132 intron Rip11 - chrX_13_18645001 chrX_18645001 RAL-897 2281 chrX 18861998 18862024 chrX 18862131 18862158 11 134 3.0 2.5 2.8 2.9 160 chrX 18861998 3` UTR CG7326 - chrX 18862078 3` UTR CG7326 - chrX 18862158 3` UTR CG7326 - chrX_11_18860001 chrX_18860001 RAL-897 2282 chrX 18896519 18896543 chrX 18896630 18896654 5 111 2.0 2.5 2.2 1.6 135 chrX 18896519 3` UTR CG7349 + chrX 18896586 intergenic CG7349 + chrX 18896654 intergenic CG7349 + chrX_5_18895001 chrX_18895001 RAL-897 2283 chrX 18896909 18896939 chrX 18896986 18897016 16 77 1.5 0.5 1.0 8.0 107 chrX 18896909 intergenic CG7349 + chrX 18896962 intergenic CG7349 + chrX 18897016 intergenic CG7349 + chrX_16_18895001 chrX_18895001 RAL-897 2284 chrX 19020600 19020614 chrX 19020678 19020692 5 78 0.5 3.5 2.0 1.7 92 chrX 19020600 intron CG43759 + chrX 19020646 intron CG43759 + chrX 19020692 intron CG43759 + chrX_5_19020001 chrX_19020001 RAL-897 2285 chrX 19080326 19080355 chrX 19080432 19080461 11 104 4.5 1.0 2.8 2.9 135 chrX 19080326 intergenic not near genes chrX 19080394 intergenic not near genes chrX 19080461 intergenic not near genes chrX_11_19080001 chrX_19080001 RAL-897 2286 chrX 19084110 19084123 chrX 19084230 19084242 4 120 0.0 2.5 1.2 1.8 132 chrX 19084110 intergenic CR45503 + chrX 19084176 intergenic CR45503 + chrX 19084242 intergenic CR45503 + chrX_4_19080001 chrX_19080001 RAL-897 2287 chrX 19099653 19099686 chrX 19099736 19099768 12 81 4.5 1.5 3.0 3.0 115 chrX 19099653 intergenic not near genes chrX 19099710 intergenic not near genes chrX 19099768 intergenic not near genes chrX_12_19095001 chrX_19095001 RAL-897 2288 chrX 19124448 19124457 chrX 19124536 19124545 4 88 2.0 0.5 1.2 1.8 97 chrX 19124448 intergenic CG15882 - chrX 19124496 intergenic CG15882 - chrX 19124545 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-897 2289 chrX 19125700 19125713 chrX 19125828 19125842 4 128 3.5 4.5 4.0 0.8 142 chrX 19125700 intron tgy - chrX 19125771 intron tgy - chrX 19125842 intron tgy - chrX_4_19125001 chrX_19125001 RAL-897 2290 chrX 19136552 19136563 chrX 19143472 19143483 412 5 6920 5.0 2.5 3.8 1.0 6931 chrX 19136552 intergenic not near genes chrX 19140018 intergenic not near genes chrX 19143483 3` UTR RhoGAP18B - chrX_5_19140001 chrX_19140001 RAL-897 2291 chrX 19162667 19162700 chrX 19162750 19162768 12 76 1.5 6.0 3.8 2.5 101 chrX 19162667 intron RhoGAP18B - chrX 19162718 intron RhoGAP18B - chrX 19162768 intron RhoGAP18B - chrX_12_19160001 chrX_19160001 RAL-897 2292 chrX 19200000 19200026 chrX 19200081 19200108 5 77 7.0 1.0 4.0 1.0 108 chrX 19200000 intron CG7990 - chrX 19200054 intron CG7990 - chrX 19200108 intron CG7990 - chrX_5_19200001 chrX_19200001 RAL-897 2293 chrX 13057298 13057300 chrX 19242812 19242814 15 6185514 3.5 4.5 4.0 3.0 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_15_16150001 chrX_16150001 RAL-897 2294 chrX 19356993 19357019 chrX 19358424 19358460 NOF 5 1439 1.5 3.5 2.5 1.4 1467 chrX 19356993 intron kek5 + chrX 19357726 intron kek5 + chrX 19358460 intron kek5 + chrX_5_19355001 chrX_19355001 RAL-897 2295 chrX 19380157 19380188 chrX 19380398 19380429 pogo 7 241 4.0 3.0 3.5 1.6 272 chrX 19380157 intron kek5 + chrX 19380293 intron kek5 + chrX 19380429 intron kek5 + chrX_7_19380001 chrX_19380001 RAL-897 2296 chrX 19472130 19472161 chrX 19472689 19472729 jockey 12 559 5.0 2.5 3.8 2.5 599 chrX 19472130 intergenic kek5 + chrX 19472430 intergenic not near genes chrX 19472729 intergenic not near genes chrX_12_19470001 chrX_19470001 RAL-897 2297 chrX 19500568 19500742 chrX 19500645 19500829 11 85 0.0 2.5 1.2 5.0 261 chrX 19500568 intron,intron CG14200 +,Pfrx + chrX 19500698 intron,intron CG14200 +,Pfrx + chrX 19500829 intron,intron CG14200 +,Pfrx + chrX_11_19500001 chrX_19500001 RAL-897 2298 chrX 19535763 19535767 chrX 19535839 19535843 4 76 12.5 9.0 10.8 0.3 80 chrX 19535763 intron CG32532 - chrX 19535803 intron CG32532 - chrX 19535843 intron CG32532 - chrX_4_19535001 chrX_19535001 RAL-897 2299 chrX 19593949 19593976 chrX 19594033 19594061 16 83 2.0 6.0 4.0 3.2 112 chrX 19593949 exon CG14205 + chrX 19594005 intron CG14205 + chrX 19594061 intron CG14205 + chrX_16_19590001 chrX_19590001 RAL-897 2300 chrX 19710074 19710104 chrX 19711860 19711890 S-element 8 1785 2.0 5.5 3.8 1.7 1816 chrX 19710074 intron meso18E - chrX 19710982 intron meso18E - chrX 19711890 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-897 2301 chrX 19769511 19769537 chrX 19769587 19769610 9 74 2.0 4.5 3.2 2.1 99 chrX 19769511 intron vfl - chrX 19769560 intron vfl - chrX 19769610 intron vfl - chrX_9_19765001 chrX_19765001 RAL-897 2302 chrX 19822836 19822850 chrX 19823002 19823017 4 166 6.0 5.0 5.5 0.6 181 chrX 19822836 intergenic not near genes chrX 19822926 intergenic skpE - chrX 19823017 intergenic skpE - chrX_4_19820001 chrX_19820001 RAL-897 2303 chrX 19822855 19822864 chrX 19822994 19823031 4 159 4.5 3.0 3.8 0.8 176 chrX 19822855 intergenic not near genes chrX 19822943 intergenic skpE - chrX 19823031 intergenic skpE - chrX_4_19820001 chrX_19820001 RAL-897 2304 chrX 19884088 19884121 chrX 19884164 19884172 5 71 3.0 3.0 3.0 1.2 84 chrX 19884088 intron Hers + chrX 19884130 intron Hers + chrX 19884172 intron Hers + chrX_5_19880001 chrX_19880001 RAL-897 2305 chrX 19897380 19897413 chrX 19897457 19897490 6 76 2.0 1.5 1.8 2.1 110 chrX 19897380 intron Hers + chrX 19897435 intron Hers + chrX 19897490 intron Hers + chrX_6_19895001 chrX_19895001 RAL-897 2306 chrX 19983874 19983899 chrX 19983954 19983979 9 78 1.5 3.5 2.5 2.6 105 chrX 19983874 intergenic not near genes chrX 19983926 intergenic not near genes chrX 19983979 intergenic not near genes chrX_9_19980001 chrX_19980001 RAL-897 2307 chrX 19992420 19992432 chrX 19992496 19992508 4 76 6.0 7.5 6.8 0.5 88 chrX 19992420 intergenic not near genes chrX 19992464 intergenic not near genes chrX 19992508 intergenic not near genes chrX_4_19990001 chrX_19990001 RAL-897 2308 chrX 20041530 20041566 chrX 20041610 20041646 11 80 1.0 2.0 1.5 4.4 116 chrX 20041530 intron Dop2R - chrX 20041588 intron Dop2R - chrX 20041646 intron Dop2R - chrX_11_20040001 chrX_20040001 RAL-897 2309 chrX 20052798 20052815 chrX 20052868 20052893 6 77 5.5 0.5 3.0 1.5 95 chrX 20052798 intron Dop2R - chrX 20052846 intron Dop2R - chrX 20052893 intron Dop2R - chrX_6_20050001 chrX_20050001 RAL-897 2310 chrX 20105200 20105229 chrX 20105304 20105332 9 109 40.0 42.0 41.0 0.2 132 chrX 20105200 intergenic not near genes chrX 20105266 intergenic not near genes chrX 20105332 intergenic not near genes chrX_9_20105001 chrX_20105001 RAL-897 2311 chrX 20124091 20124100 chrX 20124230 20124239 4 139 1.0 1.0 1.0 2.0 148 chrX 20124091 intron CG34331 + chrX 20124165 intron CG34331 + chrX 20124239 intron CG34331 + chrX_4_20120001 chrX_20120001 RAL-897 2312 chrX 20146030 20146061 chrX 20146162 20146193 9 131 2.5 2.5 2.5 2.6 163 chrX 20146030 intergenic not near genes chrX 20146112 intergenic not near genes chrX 20146193 intergenic not near genes chrX_9_20145001 chrX_20145001 RAL-897 2313 chrX 20166018 20166036 chrX 20166099 20166113 8 80 4.0 6.0 5.0 1.3 95 chrX 20166018 intergenic Phf7 - chrX 20166066 intergenic Phf7 - chrX 20166113 intergenic Phf7 - chrX_8_20165001 chrX_20165001 RAL-897 2314 chrX 20312884 20312904 chrX 20312961 20312982 9 78 3.0 5.5 4.2 1.7 98 chrX 20312884 intron CG1504 - chrX 20312933 intron CG1504 - chrX 20312982 intron CG1504 - chrX_9_20310001 chrX_20310001 RAL-897 2315 chrX 20369322 20369343 chrX 20369406 20369427 9 83 1.5 4.5 3.0 2.2 105 chrX 20369322 intergenic not near genes chrX 20369374 intergenic not near genes chrX 20369427 intergenic not near genes chrX_9_20365001 chrX_20365001 RAL-897 2316 chrX 20377345 20377350 chrX 20378788 20378808 hobo 6 1458 9.0 4.0 6.5 0.8 1463 chrX 20377345 intergenic not near genes chrX 20378076 intergenic not near genes chrX 20378808 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-897 2317 chrX 20384967 20384986 chrX 20385452 20385471 6 484 0.0 4.0 2.0 2.0 504 chrX 20384967 intergenic not near genes chrX 20385219 intergenic not near genes chrX 20385471 intergenic not near genes chrX_6_20385001 chrX_20385001 RAL-897 2318 chrX 20437364 20437389 chrX 20437935 20437953 9 569 3.5 1.5 2.5 2.6 589 chrX 20437364 intron CG1695 + chrX 20437658 intron CG1695 + chrX 20437953 intron CG1695 + chrX_9_20435001 chrX_20435001 RAL-897 2319 chrX 20504146 20504156 chrX 20505654 20505661 transib2 7 1516 4.0 8.0 6.0 1.0 1515 chrX 20504146 intron RhoGAP19D - chrX 20504904 intron RhoGAP19D - chrX 20505661 intron RhoGAP19D - chrX_7_20500001 chrX_20500001 RAL-897 2320 chrX 20708385 20708392 chrX 20708461 20708468 5 76 6.5 9.0 7.8 0.6 83 chrX 20708385 intergenic not near genes chrX 20708426 intergenic not near genes chrX 20708468 intergenic not near genes chrX_5_20705001 chrX_20705001 RAL-897 2321 chrX 20710412 20710437 chrX 20710489 20710514 5 77 0.0 1.5 0.8 2.8 102 chrX 20710412 intergenic not near genes chrX 20710463 intergenic not near genes chrX 20710514 intergenic not near genes chrX_5_20710001 chrX_20710001 RAL-897 2322 chrX 20810722 20810734 chrX 20810800 20810811 6 77 1.0 1.0 1.0 3.0 89 chrX 20810722 intron shakB - chrX 20810766 intron shakB - chrX 20810811 intron shakB - chrX_6_20810001 chrX_20810001 RAL-897 2323 chrX 20836733 20836751 chrX 20844335 20844353 roo 6 7600 3.0 3.5 3.2 1.4 7620 chrX 20836733 intron shakB - chrX 20840543 intron shakB - chrX 20844353 intron shakB - chrX_6_20840001 chrX_20840001 RAL-897 2324 chrX 20940719 20940756 chrX 20942188 20942225 hobo 16 1467 2.0 4.5 3.2 3.8 1506 chrX 20940719 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942225 intergenic not near genes chrX_16_20940001 chrX_20940001 RAL-897 2325 chrX 20971788 20971804 chrX 20971860 20971879 5 75 39.5 38.0 38.8 0.1 91 chrX 20971788 intergenic not near genes chrX 20971834 intergenic not near genes chrX 20971879 intergenic not near genes chrX_5_20970001 chrX_20970001 RAL-897 2326 chrX 20983885 20983919 chrX 20983970 20984004 11 80 4.5 2.5 3.5 2.4 119 chrX 20983885 intergenic not near genes chrX 20983944 intergenic not near genes chrX 20984004 intergenic not near genes chrX_11_20980001 chrX_20980001 RAL-897 2327 chrX 21022255 21022333 chrX 21022337 21022408 4 80 0.5 0.5 0.5 2.7 153 chrX 21022255 intergenic not near genes chrX 21022332 intergenic not near genes chrX 21022408 intergenic not near genes chrX_4_21020001 chrX_21020001 RAL-897 2328 chrX 21086129 21086163 chrX 21087158 21087192 jockey 12 1027 3.5 1.5 2.5 3.4 1063 chrX 21086129 intergenic not near genes chrX 21086660 intergenic not near genes chrX 21087192 intergenic not near genes chrX_12_21085001 chrX_21085001 RAL-897 2329 chrX 21088042 21088074 chrX 21088173 21088206 9 127 1.0 1.0 1.0 4.5 164 chrX 21088042 intergenic not near genes chrX 21088124 intergenic not near genes chrX 21088206 intergenic not near genes chrX_9_21085001 chrX_21085001 RAL-897 2330 chrX 21197073 21197082 chrX 21197136 21197157 4 72 2.5 5.0 3.8 0.8 84 chrX 21197073 intergenic not near genes chrX 21197115 intergenic not near genes chrX 21197157 intergenic not near genes chrX_4_21195001 chrX_21195001 RAL-897 2331 chrX 21241782 21241788 chrX 21241864 21241870 5 81 0.0 0.0 0.0 5.0 88 chrX 21241782 intron CG32521 - chrX 21241826 intron CG32521 - chrX 21241870 intron CG32521 - chrX_5_21240001 chrX_21240001 RAL-897 2332 chrX 21258843 21258852 chrX 21258943 21258947 6 99 4.5 4.5 4.5 1.1 104 chrX 21258843 intron CG32521 - chrX 21258895 intron CG32521 - chrX 21258947 intron CG32521 - chrX_6_21255001 chrX_21255001 RAL-897 2333 chrX 21435838 21435863 chrX 21435909 21435937 10 78 3.0 4.0 3.5 2.2 99 chrX 21435838 intron CG42343 - chrX 21435888 intron CG42343 - chrX 21435937 intron CG42343 - chrX_10_21435001 chrX_21435001 RAL-897 2334 chrX 21458699 21458725 chrX 21464135 21464161 Ivk 5 5436 0.0 2.5 1.2 2.3 5462 chrX 21458699 intergenic not near genes chrX 21461430 intergenic not near genes chrX 21464161 intergenic not near genes chrX_5_21460001 chrX_21460001 RAL-897 2335 chrX 21500565 21500589 chrX 21500766 21500790 6 201 0.0 7.0 3.5 1.3 225 chrX 21500565 intron CR45082 - chrX 21500678 intron CR45082 - chrX 21500790 intron CR45082 - chrX_6_21500001 chrX_21500001 RAL-897 2336 chrX 21516986 21517021 chrX 21517064 21517098 13 78 6.5 5.5 6.0 1.9 112 chrX 21516986 intron CR45082 - chrX 21517042 intron CR45082 - chrX 21517098 intron CR45082 - chrX_13_21515001 chrX_21515001 RAL-897 2337 chrX 21565417 21565444 chrX 21565494 21565522 13 77 2.0 2.5 2.2 4.1 105 chrX 21565417 intergenic not near genes chrX 21565470 intergenic not near genes chrX 21565522 intergenic not near genes chrX_13_21565001 chrX_21565001 RAL-897 2338 chrX 21668263 21668288 chrX 21668348 21668373 5 82 0.5 4.0 2.2 1.6 110 chrX 21668263 intergenic not near genes chrX 21668318 intergenic not near genes chrX 21668373 intergenic not near genes chrX_5_21665001 chrX_21665001 RAL-897 2339 chrX 22448281 22448294 chrX 22448409 22448433 5 136 2.0 2.0 2.0 1.7 152 chrX 22448281 intron CG14615 - chrX 22448357 intron CG14615 - chrX 22448433 intron CG14615 - chrX_5_22445001 chrX_22445001 RAL-897 2340 chrX 22522625 22522656 chrX 22525445 22525474 NOF 6 2820 2.0 1.5 1.8 2.1 2849 chrX 22522625 intron CG17600 + chrX 22524050 intron CG17600 + chrX 22525474 intron CG17600 + chrX_6_22520001 chrX_22520001 RAL-897 2341 chrX 22677293 22677325 chrX 22677501 22677534 8 208 1.5 2.5 2.0 2.7 241 chrX 22677293 intron CR44997 + chrX 22677414 intron CR44997 + chrX 22677534 intron CR44997 + chrX_8_22675001 chrX_22675001 RAL-897 2342 chrX 22771507 22771538 chrX 22774798 22774829 297 14 3290 2.5 2.5 2.5 4.0 3322 chrX 22771507 intron CR44997 + chrX 22773168 intron CR44997 + chrX 22774829 intron CR44997 + chrX_14_22770001 chrX_22770001 RAL-897 2343 chrX 22824234 22824444 chrX 22824359 22824576 6 129 0.0 1.0 0.5 4.0 342 chrX 22824234 intergenic fog - chrX 22824405 3` UTR fog - chrX 22824576 3` UTR fog - chrX_6_22820001 chrX_22820001 RAL-897 2344 chrX 22928514 22928535 chrX 22928671 22928680 5 154 4.0 3.5 3.8 1.0 166 chrX 22928514 intergenic not near genes chrX 22928597 intergenic not near genes chrX 22928680 intergenic not near genes chrX_5_22925001 chrX_22925001 RAL-897 2345 chrX 22967396 22967515 chrX 23154547 23154691 diver 4 187164 2.0 6.5 4.2 0.8 187295 chrX 22967396 intergenic not near genes chrX 23061044 intergenic not near genes chrX 23154691 intergenic not near genes chrX_4_23060001 chrX_23060001 RAL-897 2346 chrX 22987103 22987133 chrX 22989762 22989791 Burdock 6 2657 1.5 1.5 1.5 2.4 2688 chrX 22987103 intron,intron stnA -,stnB - chrX 22988447 intron,intron stnA -,stnB - chrX 22989791 intron,intron stnA -,stnB - chrX_6_22985001 chrX_22985001 RAL-897 2347 chrX 22992403 22992421 chrX 22992534 22992549 5 130 3.5 6.0 4.8 0.9 146 chrX 22992403 intron,intron stnA -,stnB - chrX 22992476 intron,intron stnA -,stnB - chrX 22992549 intron,intron stnA -,stnB - chrX_5_22990001 chrX_22990001 RAL-897 2348 chrX 22996315 22996340 chrX 23003547 23003571 roo 4 7228 2.5 1.5 2.0 1.3 7256 chrX 22996315 intron,intron stnA -,stnB - chrX 22999943 intron,intron stnA -,stnB - chrX 23003571 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-897 2349 chrX 23036382 23036412 chrX 23037783 23037812 pogo 8 1401 2.0 1.0 1.5 3.2 1430 chrX 23036382 intron CG12061 + chrX 23037097 intron CG12061 + chrX 23037812 intron CG12061 + chrX_8_23035001 chrX_23035001 RAL-897 2350 chrX 22892366 22892380 chrX 23039010 23039024 5 146645 7.0 7.0 7.0 0.6 146658 chrX 22892366 intergenic not near genes chrX 22965695 intergenic not near genes chrX 23039024 intron CG12061 + chrX_5_22965001 chrX_22965001 RAL-897 2351 chrY 519154 519168 chrY 519239 519242 4 82 3.5 3.0 3.2 1.0 88 chrY 519154 intron kl-3 + chrY 519198 intron kl-3 + chrY 519242 intron kl-3 + chrY_4_515001 chrY_515001 RAL-897 2352 chrY 975792 975828 chrY 975872 975934 16 109 226.0 239.0 232.5 0.1 142 chrY 975792 intergenic not near genes chrY 975863 intergenic not near genes chrY 975934 intergenic not near genes chrY_16_975001 chrY_975001 RAL-897