SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47464 47486 chr2L 52569 52590 jockey 6 5105 6.0 7.0 6.5 0.8 5126 chr2L 47464 intron Cda5 - chr2L 50027 intron Cda5 - chr2L 52590 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-890 2 chr2L 325151 325158 chr2L 325202 325214 4 60 5.0 4.0 4.5 0.7 63 chr2L 325151 intron Plc21C + chr2L 325182 intron Plc21C + chr2L 325214 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-890 3 chr2L 347884 347919 chr2L 355384 355419 blood 9 7500 4.0 2.0 3.0 2.2 7535 chr2L 347884 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355419 3` UTR Plc21C + chr2L_9_350001 chr2L_350001 RAL-890 4 chr2L 407950 407970 chr2L 408031 408051 5 81 5.5 2.5 4.0 1.0 101 chr2L 407950 3` UTR RpI135 + chr2L 408000 intergenic AP-2alpha -,RpI135 + chr2L 408051 3` UTR AP-2alpha - chr2L_5_405001 chr2L_405001 RAL-890 5 chr2L 489535 489566 chr2L 489617 489636 8 78 2.5 2.0 2.2 2.5 101 chr2L 489535 intron ush + chr2L 489586 intron ush + chr2L 489636 intron ush + chr2L_8_485001 chr2L_485001 RAL-890 6 chr2L 609294 609328 chr2L 609409 609443 7 109 1.5 5.0 3.2 1.7 149 chr2L 609294 intergenic CR43649 - chr2L 609368 intergenic CR43649 - chr2L 609443 intergenic CR43649 - chr2L_7_605001 chr2L_605001 RAL-890 7 chr2L 620323 620355 chr2L 620403 620436 14 82 0.0 3.5 1.8 5.0 113 chr2L 620323 3` UTR lectin-21Cb - chr2L 620380 3` UTR lectin-21Cb - chr2L 620436 exon lectin-21Cb - chr2L_14_620001 chr2L_620001 RAL-890 8 chr2L 666280 666309 chr2L 666356 666385 8 75 2.0 0.0 1.0 4.0 105 chr2L 666280 intron ds - chr2L 666332 intron ds - chr2L 666385 intron ds - chr2L_8_665001 chr2L_665001 RAL-890 9 chr2L 686922 686948 chr2L 695961 695987 roo 4 9040 4.0 3.5 3.8 0.8 9065 chr2L 686922 intron ds - chr2L 691454 intron ds - chr2L 695987 intron ds - chr2L_4_690001 chr2L_690001 RAL-890 10 chr2L 748209 748237 chr2L 748288 748316 8 79 3.5 4.0 3.8 1.7 107 chr2L 748209 intergenic not near genes chr2L 748262 intergenic not near genes chr2L 748316 intergenic not near genes chr2L_8_745001 chr2L_745001 RAL-890 11 chr2L 770471 770489 chr2L 772244 772259 Bari1 6 1776 1.0 2.0 1.5 2.4 1788 chr2L 770471 intergenic not near genes chr2L 771365 intergenic not near genes chr2L 772259 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-890 12 chr2L 795264 795286 chr2L 795372 795396 10 107 2.0 0.0 1.0 5.0 132 chr2L 795264 intergenic not near genes chr2L 795330 intergenic not near genes chr2L 795396 intergenic not near genes chr2L_10_795001 chr2L_795001 RAL-890 13 chr2L 826904 826929 chr2L 826982 827008 10 78 2.5 3.0 2.8 2.6 104 chr2L 826904 intron dock + chr2L 826956 intron dock + chr2L 827008 intron dock + chr2L_10_825001 chr2L_825001 RAL-890 14 chr2L 922464 922493 chr2L 922545 922574 10 81 1.0 1.5 1.2 4.5 110 chr2L 922464 intergenic CG4341 + chr2L 922519 intergenic CG4341 + chr2L 922574 intergenic CG4341 + chr2L_10_920001 chr2L_920001 RAL-890 15 chr2L 931632 931669 chr2L 931711 931717 10 75 2.5 2.5 2.5 2.9 85 chr2L 931632 intron CG4341 + chr2L 931674 intron CG4341 + chr2L 931717 intron CG4341 + chr2L_10_930001 chr2L_930001 RAL-890 16 chr2L 976881 976908 chr2L 984517 984544 roo 10 7636 2.5 1.0 1.8 3.6 7663 chr2L 976881 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984544 intergenic not near genes chr2L_10_980001 chr2L_980001 RAL-890 17 chr2L 1035559 1035594 chr2L 1035636 1035668 14 70 3.0 3.0 3.0 3.5 109 chr2L 1035559 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035668 intron IA-2 - chr2L_14_1035001 chr2L_1035001 RAL-890 18 chr2L 1041352 1041380 chr2L 1041439 1041443 12 86 2.0 1.0 1.5 4.8 91 chr2L 1041352 intron IA-2 - chr2L 1041398 intron IA-2 - chr2L 1041443 intron IA-2 - chr2L_12_1040001 chr2L_1040001 RAL-890 19 chr2L 1137655 1137686 chr2L 1137835 1137866 14 180 3.5 4.5 4.0 2.8 211 chr2L 1137655 intron CG4577 + chr2L 1137760 intron CG4577 + chr2L 1137866 intron CG4577 + chr2L_14_1135001 chr2L_1135001 RAL-890 20 chr2L 1164245 1164275 chr2L 1164331 1164361 7 86 3.0 3.0 3.0 1.8 116 chr2L 1164245 intergenic IntS14 +,CG5080 - chr2L 1164303 intergenic IntS14 +,CG5080 - chr2L 1164361 intergenic IntS14 +,CG5080 - chr2L_7_1160001 chr2L_1160001 RAL-890 21 chr2L 1220129 1220161 chr2L 1227593 1227627 blood 14 7466 3.5 2.0 2.8 3.7 7498 chr2L 1220129 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_14_1220001 chr2L_1220001 RAL-890 22 chr2L 1261232 1261256 chr2L 1261312 1261336 6 81 0.0 2.0 1.0 3.0 104 chr2L 1261232 intron robo3 + chr2L 1261284 intron robo3 + chr2L 1261336 intron robo3 + chr2L_6_1260001 chr2L_1260001 RAL-890 23 chr2L 1327179 1327200 chr2L 1327579 1327600 9 399 4.0 2.5 3.2 2.1 421 chr2L 1327179 intergenic not near genes chr2L 1327390 intergenic not near genes chr2L 1327600 intergenic not near genes chr2L_9_1325001 chr2L_1325001 RAL-890 24 chr2L 1436622 1436657 chr2L 1436708 1436710 8 80 0.5 4.5 2.5 2.3 88 chr2L 1436622 intergenic not near genes chr2L 1436666 intergenic not near genes chr2L 1436710 intergenic not near genes chr2L_8_1435001 chr2L_1435001 RAL-890 25 chr2L 1508054 1508265 chr2L 1508137 1508351 11 84 2.0 4.5 3.2 2.6 297 chr2L 1508054 intergenic not near genes chr2L 1508202 intergenic not near genes chr2L 1508351 intergenic not near genes chr2L_11_1505001 chr2L_1505001 RAL-890 26 chr2L 1570693 1570711 chr2L 1573565 1573583 F-element 8 2871 5.0 3.0 4.0 1.6 2890 chr2L 1570693 intron haf + chr2L 1572138 intron haf + chr2L 1573583 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-890 27 chr2L 1590961 1590989 chr2L 1591036 1591065 8 74 2.5 3.0 2.8 2.1 104 chr2L 1590961 intron haf + chr2L 1591013 intron haf + chr2L 1591065 intron haf + chr2L_8_1590001 chr2L_1590001 RAL-890 28 chr2L 1615386 1615407 chr2L 1615468 1615489 7 82 0.0 2.0 1.0 3.5 103 chr2L 1615386 intergenic not near genes chr2L 1615438 intergenic not near genes chr2L 1615489 intergenic not near genes chr2L_7_1615001 chr2L_1615001 RAL-890 29 chr2L 1624742 1624750 chr2L 1624863 1624892 5 133 1.0 1.5 1.2 2.3 150 chr2L 1624742 3` UTR CR44603 - chr2L 1624817 3` UTR CR44603 - chr2L 1624892 3` UTR CR44603 - chr2L_5_1620001 chr2L_1620001 RAL-890 30 chr2L 1678981 1679009 chr2L 1686446 1686474 blood 5 7465 1.5 4.5 3.0 1.2 7493 chr2L 1678981 intron chinmo + chr2L 1682728 intron chinmo + chr2L 1686474 intron chinmo + chr2L_5_1680001 chr2L_1680001 RAL-890 31 chr2L 1744808 1744832 chr2L 1744886 1744909 13 76 2.0 1.5 1.8 4.6 101 chr2L 1744808 intron CG17646 + chr2L 1744858 intron CG17646 + chr2L 1744909 intron CG17646 + chr2L_13_1740001 chr2L_1740001 RAL-890 32 chr2L 1759296 1759299 chr2L 1759373 1759380 4 80 4.0 2.5 3.2 1.0 84 chr2L 1759296 intergenic CG17650 - chr2L 1759338 intergenic CG17650 - chr2L 1759380 intergenic CG17650 - chr2L_4_1755001 chr2L_1755001 RAL-890 33 chr2L 1923283 1923299 chr2L 1923363 1923379 7 79 5.0 0.5 2.8 1.8 96 chr2L 1923283 intron CG7337 + chr2L 1923331 intron CG7337 + chr2L 1923379 intron CG7337 + chr2L_7_1920001 chr2L_1920001 RAL-890 34 chr2L 1993195 1993226 chr2L 1993281 1993312 14 84 3.0 4.0 3.5 3.1 117 chr2L 1993195 intergenic not near genes chr2L 1993254 intergenic not near genes chr2L 1993312 intergenic not near genes chr2L_14_1990001 chr2L_1990001 RAL-890 35 chr2L 2003667 2003700 chr2L 2003743 2003776 9 73 2.5 3.5 3.0 2.2 109 chr2L 2003667 intron,5` UTR CG33543 -,CR43464 + chr2L 2003722 intron,5` UTR CG33543 -,CR43464 + chr2L 2003776 intron,5` UTR CG33543 -,CR43464 + chr2L_9_2000001 chr2L_2000001 RAL-890 36 chr2L 2100375 2100408 chr2L 2109525 2109537 roo 14 9148 4.0 1.5 2.8 3.7 9162 chr2L 2100375 intron dpr3 - chr2L 2104956 intron dpr3 - chr2L 2109537 intron dpr3 - chr2L_14_2100001 chr2L_2100001 RAL-890 37 chr2L 2110195 2110208 chr2L 2110321 2110334 4 126 0.0 6.5 3.2 1.0 139 chr2L 2110195 intergenic dpr3 - chr2L 2110264 intergenic dpr3 - chr2L 2110334 intergenic dpr3 - chr2L_4_2110001 chr2L_2110001 RAL-890 38 chr2L 2176247 2176270 chr2L 2176327 2176350 6 76 0.5 2.5 1.5 2.4 103 chr2L 2176247 intron aop - chr2L 2176298 intron aop - chr2L 2176350 intron aop - chr2L_6_2175001 chr2L_2175001 RAL-890 39 chr2L 2250723 2250739 chr2L 2250819 2250834 7 95 4.5 2.5 3.5 1.6 111 chr2L 2250723 exon Ser12 - chr2L 2250778 exon Ser12 - chr2L 2250834 exon Ser12 - chr2L_7_2250001 chr2L_2250001 RAL-890 40 chr2L 2250742 2250754 chr2L 2250817 2250836 4 87 1.0 2.0 1.5 1.6 94 chr2L 2250742 exon Ser12 - chr2L 2250789 exon Ser12 - chr2L 2250836 exon Ser12 - chr2L_4_2250001 chr2L_2250001 RAL-890 41 chr2L 2364093 2364103 chr2L 2364169 2364179 4 76 3.5 8.0 5.8 0.6 86 chr2L 2364093 intron Rab5 - chr2L 2364136 intron Rab5 - chr2L 2364179 intron Rab5 - chr2L_4_2360001 chr2L_2360001 RAL-890 42 chr2L 2500377 2500411 chr2L 2500497 2500507 4 114 4.5 1.5 3.0 1.0 130 chr2L 2500377 intergenic not near genes chr2L 2500442 intergenic not near genes chr2L 2500507 intergenic not near genes chr2L_4_2500001 chr2L_2500001 RAL-890 43 chr2L 2547961 2547977 chr2L 2549175 2549198 9 1213 18.0 14.5 16.2 0.5 1237 chr2L 2547961 intergenic not near genes chr2L 2548580 intergenic not near genes chr2L 2549198 intergenic not near genes chr2L_9_2545001 chr2L_2545001 RAL-890 44 chr2L 2565556 2565561 chr2L 2571629 2571634 297 4 6073 4.0 2.0 3.0 1.0 6078 chr2L 2565556 exon Cyp309a2 - chr2L 2568595 intron Cyp309a2 - chr2L 2571634 intron Cyp309a2 - chr2L_4_2565001 chr2L_2565001 RAL-890 45 chr2L 2587820 2587846 chr2L 2587896 2587925 7 77 3.5 3.0 3.2 1.7 105 chr2L 2587820 intergenic not near genes chr2L 2587872 intergenic not near genes chr2L 2587925 intergenic not near genes chr2L_7_2585001 chr2L_2585001 RAL-890 46 chr2L 2597037 2597063 chr2L 2597142 2597168 6 105 2.5 6.5 4.5 1.1 131 chr2L 2597037 intergenic not near genes chr2L 2597102 intergenic not near genes chr2L 2597168 intergenic not near genes chr2L_6_2595001 chr2L_2595001 RAL-890 47 chr2L 2715693 2715698 chr2L 2715766 2715774 5 75 1.0 3.0 2.0 1.7 81 chr2L 2715693 intron CG31690 + chr2L 2715734 intron CG31690 + chr2L 2715774 intron CG31690 + chr2L_5_2715001 chr2L_2715001 RAL-890 48 chr2L 2772613 2772630 chr2L 2779195 2779212 297 5 6582 2.5 4.0 3.2 1.2 6599 chr2L 2772613 3` UTR Syt1 - chr2L 2775912 intron Syt1 - chr2L 2779212 3` UTR Syt1 - chr2L_5_2775001 chr2L_2775001 RAL-890 49 chr2L 2826540 2826576 chr2L 2826632 2826661 6 82 0.0 4.5 2.2 1.9 121 chr2L 2826540 intron Duox - chr2L 2826600 intron Duox - chr2L 2826661 intron Duox - chr2L_6_2825001 chr2L_2825001 RAL-890 50 chr2L 2895686 2895716 chr2L 2895772 2895802 10 86 2.0 1.0 1.5 4.0 116 chr2L 2895686 intron lilli + chr2L 2895744 intron lilli + chr2L 2895802 intron lilli + chr2L_10_2895001 chr2L_2895001 RAL-890 51 chr2L 2937420 2937448 chr2L 2937497 2937524 10 77 5.5 5.5 5.5 1.5 104 chr2L 2937420 intron lilli + chr2L 2937472 intron lilli + chr2L 2937524 intron lilli + chr2L_10_2935001 chr2L_2935001 RAL-890 52 chr2L 3073030 3073062 chr2L 3078233 3078265 copia 9 5203 3.5 2.0 2.8 2.4 5235 chr2L 3073030 intron toc - chr2L 3075648 intron toc - chr2L 3078265 intron toc - chr2L_9_3075001 chr2L_3075001 RAL-890 53 chr2L 3108873 3108897 chr2L 3108950 3108974 11 77 4.0 2.0 3.0 2.8 101 chr2L 3108873 intron toc - chr2L 3108924 intron toc - chr2L 3108974 intron toc - chr2L_11_3105001 chr2L_3105001 RAL-890 54 chr2L 3251495 3251527 chr2L 3259060 3259092 springer 8 7565 3.0 4.0 3.5 1.8 7597 chr2L 3251495 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259092 intergenic not near genes chr2L_8_3255001 chr2L_3255001 RAL-890 55 chr2L 3286943 3286960 chr2L 3287127 3287143 8 182 4.0 2.0 3.0 2.0 200 chr2L 3286943 intergenic not near genes chr2L 3287043 intergenic not near genes chr2L 3287143 intergenic not near genes chr2L_8_3285001 chr2L_3285001 RAL-890 56 chr2L 3291245 3291261 chr2L 3291317 3291340 6 78 2.0 3.5 2.8 1.6 95 chr2L 3291245 3` UTR CG9664 - chr2L 3291292 3` UTR CG9664 - chr2L 3291340 3` UTR CG9664 - chr2L_6_3290001 chr2L_3290001 RAL-890 57 chr2L 3388598 3388624 chr2L 3388839 3388865 pogo 9 240 3.0 4.0 3.5 2.0 267 chr2L 3388598 intergenic CG42460 - chr2L 3388732 intergenic CG42460 - chr2L 3388865 intergenic CG42460 -,CR44791 + chr2L_9_3385001 chr2L_3385001 RAL-890 58 chr2L 3508349 3508376 chr2L 3508427 3508454 5 78 3.0 2.0 2.5 1.4 105 chr2L 3508349 intergenic tim -,CR45299 + chr2L 3508402 intergenic CR45299 +,tim - chr2L 3508454 intergenic CR45299 +,tim - chr2L_5_3505001 chr2L_3505001 RAL-890 59 chr2L 3584675 3584705 chr2L 3584750 3584781 4 76 4.0 2.5 3.2 1.0 106 chr2L 3584675 intergenic not near genes chr2L 3584728 intergenic not near genes chr2L 3584781 intergenic not near genes chr2L_4_3580001 chr2L_3580001 RAL-890 60 chr2L 3601088 3601121 chr2L 3601173 3601200 6 83 0.5 0.0 0.2 5.0 112 chr2L 3601088 intergenic not near genes chr2L 3601144 intergenic not near genes chr2L 3601200 intergenic not near genes chr2L_6_3600001 chr2L_3600001 RAL-890 61 chr2L 3603627 3603648 chr2L 3603723 3603744 8 96 2.5 4.0 3.2 1.9 117 chr2L 3603627 intergenic not near genes chr2L 3603686 intergenic not near genes chr2L 3603744 intergenic odd - chr2L_8_3600001 chr2L_3600001 RAL-890 62 chr2L 3616585 3616594 chr2L 3616662 3616670 4 77 0.0 4.0 2.0 1.3 85 chr2L 3616585 5` UTR CR44310 + chr2L 3616628 5` UTR CR44310 + chr2L 3616670 5` UTR CR44310 + chr2L_4_3615001 chr2L_3615001 RAL-890 63 chr2L 3632356 3632384 chr2L 3632479 3632507 10 122 1.5 3.0 2.2 3.1 151 chr2L 3632356 intron for - chr2L 3632432 intron for - chr2L 3632507 intron for - chr2L_10_3630001 chr2L_3630001 RAL-890 64 chr2L 3649792 3649807 chr2L 3654994 3655009 copia 5 5202 1.0 5.5 3.2 1.2 5217 chr2L 3649792 intron for - chr2L 3652400 intron for - chr2L 3655009 intron for - chr2L_5_3650001 chr2L_3650001 RAL-890 65 chr2L 3686032 3686057 chr2L 3686120 3686145 8 88 0.0 1.0 0.5 5.3 113 chr2L 3686032 intron CG34340 + chr2L 3686088 intron CG34340 + chr2L 3686145 intron CG34340 + chr2L_8_3685001 chr2L_3685001 RAL-890 66 chr2L 3784810 3784825 chr2L 3785669 3785684 5 859 19.0 20.0 19.5 0.2 874 chr2L 3784810 intergenic CG31960 + chr2L 3785247 exon CG31960 + chr2L 3785684 intergenic CG31958 +,CG31960 + chr2L_5_3785001 chr2L_3785001 RAL-890 67 chr2L 3887880 3887889 chr2L 3887963 3887972 5 83 2.0 5.5 3.8 1.0 92 chr2L 3887880 intron capu - chr2L 3887926 intron capu - chr2L 3887972 intron capu - chr2L_5_3885001 chr2L_3885001 RAL-890 68 chr2L 3931996 3932019 chr2L 3934963 3934985 7 2965 13.5 6.5 10.0 0.6 2989 chr2L 3931996 intron fred - chr2L 3933490 intron fred - chr2L 3934985 intron fred - chr2L_7_3930001 chr2L_3930001 RAL-890 69 chr2L 3960563 3960595 chr2L 3960733 3960765 7 170 3.5 2.0 2.8 1.8 202 chr2L 3960563 intron fred - chr2L 3960664 intron fred - chr2L 3960765 intron fred - chr2L_7_3960001 chr2L_3960001 RAL-890 70 chr2L 4014653 4014683 chr2L 4014796 4014825 10 143 3.5 3.0 3.2 2.4 172 chr2L 4014653 intergenic not near genes chr2L 4014739 intergenic not near genes chr2L 4014825 intergenic not near genes chr2L_10_4010001 chr2L_4010001 RAL-890 71 chr2L 4066049 4066063 chr2L 4068866 4068888 Juan 5 2823 5.0 2.0 3.5 1.1 2839 chr2L 4066049 intron ed + chr2L 4067468 intron ed + chr2L 4068888 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-890 72 chr2L 4108628 4108638 chr2L 4108713 4108723 4 84 5.0 2.0 3.5 0.9 95 chr2L 4108628 intron ed + chr2L 4108676 intron ed + chr2L 4108723 intron ed + chr2L_4_4105001 chr2L_4105001 RAL-890 73 chr2L 4150622 4150652 chr2L 4150702 4150708 13 75 1.0 6.0 3.5 2.9 86 chr2L 4150622 exon CG2955 + chr2L 4150665 exon CG2955 + chr2L 4150708 exon CG2955 + chr2L_13_4150001 chr2L_4150001 RAL-890 74 chr2L 4160507 4160536 chr2L 4160917 4160937 4 404 1.5 3.5 2.5 1.1 430 chr2L 4160507 intergenic not near genes chr2L 4160722 intergenic not near genes chr2L 4160937 intergenic not near genes chr2L_4_4160001 chr2L_4160001 RAL-890 75 chr2L 4181294 4181302 chr2L 4183925 4183934 Burdock 5 2632 2.5 9.5 6.0 0.7 2640 chr2L 4181294 intergenic not near genes chr2L 4182614 intergenic not near genes chr2L 4183934 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-890 76 chr2L 4211083 4211113 chr2L 4212911 4212919 8 1825 20.5 13.0 16.8 0.4 1836 chr2L 4211083 intron ft - chr2L 4212001 intron ft - chr2L 4212919 exon ft - chr2L_8_4210001 chr2L_4210001 RAL-890 77 chr2L 4210765 4210781 chr2L 4213270 4213286 6 2506 34.0 17.0 25.5 0.2 2521 chr2L 4210765 intron ft - chr2L 4212026 intron ft - chr2L 4213286 exon ft - chr2L_6_4210001 chr2L_4210001 RAL-890 78 chr2L 4270460 4270492 chr2L 4270540 4270572 7 79 2.0 1.5 1.8 2.5 112 chr2L 4270460 intergenic not near genes chr2L 4270516 intergenic not near genes chr2L 4270572 intergenic not near genes chr2L_7_4270001 chr2L_4270001 RAL-890 79 chr2L 4351472 4351502 chr2L 4351548 4351555 10 73 1.5 0.0 0.8 5.6 83 chr2L 4351472 intergenic CR44700 + chr2L 4351514 intergenic CR44700 + chr2L 4351555 intergenic CR44700 + chr2L_10_4350001 chr2L_4350001 RAL-890 80 chr2L 4432075 4432102 chr2L 4432537 4432566 6 457 0.5 4.0 2.2 1.9 491 chr2L 4432075 intron CG15431 - chr2L 4432320 intron CG15431 - chr2L 4432566 intron CG15431 - chr2L_6_4430001 chr2L_4430001 RAL-890 81 chr2L 4601706 4601736 chr2L 4609143 4609177 mdg1 14 7440 1.5 4.0 2.8 3.7 7471 chr2L 4601706 intron dp - chr2L 4605442 intron dp - chr2L 4609177 intron dp - chr2L_14_4605001 chr2L_4605001 RAL-890 82 chr2L 4661845 4661852 chr2L 4669425 4669432 opus 5 7580 3.0 7.0 5.0 0.8 7587 chr2L 4661845 intergenic not near genes chr2L 4665638 intergenic not near genes chr2L 4669432 intergenic not near genes chr2L_5_4665001 chr2L_4665001 RAL-890 83 chr2L 4681288 4681320 chr2L 4681551 4681576 9 261 2.5 2.0 2.2 2.8 288 chr2L 4681288 intergenic not near genes chr2L 4681432 intergenic not near genes chr2L 4681576 intergenic not near genes chr2L_9_4680001 chr2L_4680001 RAL-890 84 chr2L 4748692 4748718 chr2L 4748771 4748796 14 79 4.5 2.0 3.2 3.3 104 chr2L 4748692 intron CG15630 - chr2L 4748744 intron CG15630 - chr2L 4748796 intron CG15630 - chr2L_14_4745001 chr2L_4745001 RAL-890 85 chr2L 4803883 4803900 chr2L 4803967 4803984 5 84 2.5 2.0 2.2 1.6 101 chr2L 4803883 intergenic not near genes chr2L 4803934 intergenic not near genes chr2L 4803984 intergenic not near genes chr2L_5_4800001 chr2L_4800001 RAL-890 86 chr2L 4819494 4819518 chr2L 4819617 4819641 12 123 3.5 3.0 3.2 2.9 147 chr2L 4819494 intergenic not near genes chr2L 4819568 intergenic not near genes chr2L 4819641 intergenic not near genes chr2L_12_4815001 chr2L_4815001 RAL-890 87 chr2L 4842538 4842560 chr2L 4842615 4842638 10 78 4.0 7.0 5.5 1.5 100 chr2L 4842538 intron mxt - chr2L 4842588 intron mxt - chr2L 4842638 intron mxt - chr2L_10_4840001 chr2L_4840001 RAL-890 88 chr2L 4858464 4858478 chr2L 4858552 4858566 7 88 0.0 0.0 0.0 7.0 102 chr2L 4858464 intron pog + chr2L 4858515 intron pog + chr2L 4858566 intron pog + chr2L_7_4855001 chr2L_4855001 RAL-890 89 chr2L 4859589 4859609 chr2L 4859669 4859689 9 79 4.0 5.5 4.8 1.6 100 chr2L 4859589 intron pog + chr2L 4859639 intron pog + chr2L 4859689 intron pog + chr2L_9_4855001 chr2L_4855001 RAL-890 90 chr2L 4917313 4917340 chr2L 4917403 4917425 6 88 3.0 1.5 2.2 1.9 112 chr2L 4917313 intron hoe1 - chr2L 4917369 intron hoe1 - chr2L 4917425 intron hoe1 - chr2L_6_4915001 chr2L_4915001 RAL-890 91 chr2L 4918168 4918198 chr2L 4923240 4923264 jockey 12 5072 2.5 3.0 2.8 3.2 5096 chr2L 4918168 intron hoe1 - chr2L 4920716 intron hoe1 - chr2L 4923264 intron hoe1 - chr2L_12_4920001 chr2L_4920001 RAL-890 92 chr2L 5027962 5027993 chr2L 5028046 5028077 12 83 2.0 4.0 3.0 3.0 115 chr2L 5027962 intron vkg - chr2L 5028020 intron vkg - chr2L 5028077 intron vkg - chr2L_12_5025001 chr2L_5025001 RAL-890 93 chr2L 5040684 5040711 chr2L 5040779 5040807 6 96 3.0 1.5 2.2 1.9 123 chr2L 5040684 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040746 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040807 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_6_5040001 chr2L_5040001 RAL-890 94 chr2L 5120975 5121003 chr2L 5121067 5121092 14 92 2.0 2.0 2.0 4.7 117 chr2L 5120975 intron Msp300 + chr2L 5121034 intron Msp300 + chr2L 5121092 intron Msp300 + chr2L_14_5120001 chr2L_5120001 RAL-890 95 chr2L 5200537 5200551 chr2L 5215799 5215813 5 15258 14.0 15.0 14.5 0.3 15276 chr2L 5200537 exon Msp300 + chr2L 5208175 exon Cyp28d2 + chr2L 5215813 exon CG14034 - chr2L_5_5205001 chr2L_5205001 RAL-890 96 chr2L 5242870 5242890 chr2L 5243056 5243079 11 188 4.5 3.0 3.8 2.3 209 chr2L 5242870 intron tkv - chr2L 5242974 intron tkv - chr2L 5243079 intron tkv - chr2L_11_5240001 chr2L_5240001 RAL-890 97 chr2L 5342771 5342802 chr2L 5345151 5345182 Doc 9 2380 2.0 1.5 1.8 3.2 2411 chr2L 5342771 intergenic not near genes chr2L 5343976 intergenic not near genes chr2L 5345182 intergenic not near genes chr2L_9_5340001 chr2L_5340001 RAL-890 98 chr2L 5438843 5438867 chr2L 5439357 5439365 4 502 15.0 9.5 12.2 0.3 522 chr2L 5438843 intron CR31647 - chr2L 5439104 intron CR31647 - chr2L 5439365 intergenic CR31647 - chr2L_4_5435001 chr2L_5435001 RAL-890 99 chr2L 5501448 5501472 chr2L 5501524 5501548 6 76 2.0 0.0 1.0 3.0 100 chr2L 5501448 intergenic not near genes chr2L 5501498 intergenic not near genes chr2L 5501548 intergenic not near genes chr2L_6_5500001 chr2L_5500001 RAL-890 100 chr2L 5508528 5508564 chr2L 5508604 5508640 10 76 2.5 2.5 2.5 2.9 112 chr2L 5508528 intergenic not near genes chr2L 5508584 intergenic not near genes chr2L 5508640 intergenic not near genes chr2L_10_5505001 chr2L_5505001 RAL-890 101 chr2L 5511327 5511354 chr2L 5511410 5511436 7 83 5.0 5.0 5.0 1.2 109 chr2L 5511327 intergenic not near genes chr2L 5511382 intergenic not near genes chr2L 5511436 intergenic not near genes chr2L_7_5510001 chr2L_5510001 RAL-890 102 chr2L 5634173 5634210 chr2L 5634264 5634297 12 89 3.0 1.5 2.2 3.8 124 chr2L 5634173 intron CG31646 - chr2L 5634235 intron CG31646 - chr2L 5634297 intron CG31646 - chr2L_12_5630001 chr2L_5630001 RAL-890 103 chr2L 5695866 5695877 chr2L 5695958 5695969 9 92 3.5 5.0 4.2 1.7 103 chr2L 5695866 intergenic not near genes chr2L 5695918 intergenic not near genes chr2L 5695969 intergenic not near genes chr2L_9_5695001 chr2L_5695001 RAL-890 104 chr2L 5749901 5749928 chr2L 5749977 5749978 4 64 4.5 3.0 3.8 0.8 77 chr2L 5749901 intron CG11030 + chr2L 5749940 intron CG11030 + chr2L 5749978 intron CG11030 + chr2L_4_5745001 chr2L_5745001 RAL-890 105 chr2L 5762381 5762407 chr2L 5762504 5762530 4 123 4.0 2.0 3.0 1.0 149 chr2L 5762381 3` UTR CG11030 + chr2L 5762456 intergenic CG11030 +,obst-E - chr2L 5762530 intergenic obst-E -,CG11030 + chr2L_4_5760001 chr2L_5760001 RAL-890 106 chr2L 5780908 5780936 chr2L 5781013 5781041 14 102 2.0 4.5 3.2 3.3 133 chr2L 5780908 intron CG9171 - chr2L 5780974 intron CG9171 - chr2L 5781041 intron CG9171 - chr2L_14_5780001 chr2L_5780001 RAL-890 107 chr2L 5805219 5805253 chr2L 5805338 5805371 13 119 2.0 1.0 1.5 5.2 152 chr2L 5805219 intergenic CG11034 + chr2L 5805295 intergenic CG11034 + chr2L 5805371 intergenic CG11034 + chr2L_13_5805001 chr2L_5805001 RAL-890 108 chr2L 5825072 5825105 chr2L 5825157 5825199 8 88 2.5 0.0 1.2 3.6 127 chr2L 5825072 5` UTR TrissinR + chr2L 5825136 5` UTR TrissinR + chr2L 5825199 5` UTR TrissinR + chr2L_8_5825001 chr2L_5825001 RAL-890 109 chr2L 5827711 5827737 chr2L 5836719 5836745 roo 9 9007 3.5 7.5 5.5 1.4 9034 chr2L 5827711 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836745 intron TrissinR + chr2L_9_5830001 chr2L_5830001 RAL-890 110 chr2L 5870475 5870507 chr2L 5870550 5870584 8 76 2.5 2.5 2.5 2.3 109 chr2L 5870475 intron rau - chr2L 5870530 intron rau - chr2L 5870584 intron rau - chr2L_8_5870001 chr2L_5870001 RAL-890 111 chr2L 5926346 5926623 chr2L 5926466 5926702 9 88 1.0 0.0 0.5 6.0 356 chr2L 5926346 intron dsf + chr2L 5926524 intron dsf + chr2L 5926702 intron dsf + chr2L_9_5925001 chr2L_5925001 RAL-890 112 chr2L 5931497 5931523 chr2L 5931581 5931606 9 84 5.0 3.0 4.0 1.8 109 chr2L 5931497 intron dsf + chr2L 5931552 intron dsf + chr2L 5931606 intron dsf + chr2L_9_5930001 chr2L_5930001 RAL-890 113 chr2L 6002437 6002471 chr2L 6002523 6002557 10 83 2.0 1.0 1.5 4.0 120 chr2L 6002437 3` UTR Tsp26A + chr2L 6002497 3` UTR Tsp26A + chr2L 6002557 3` UTR Tsp26A + chr2L_10_6000001 chr2L_6000001 RAL-890 114 chr2L 6037037 6037064 chr2L 6037115 6037142 10 78 2.5 5.0 3.8 2.1 105 chr2L 6037037 3` UTR CG9117 - chr2L 6037090 3` UTR CG9117 - chr2L 6037142 exon CG9117 - chr2L_10_6035001 chr2L_6035001 RAL-890 115 chr2L 6363165 6363182 chr2L 6366087 6366104 Burdock 8 2921 2.5 3.0 2.8 2.1 2939 chr2L 6363165 intergenic not near genes chr2L 6364634 intergenic not near genes chr2L 6366104 intergenic not near genes chr2L_8_6360001 chr2L_6360001 RAL-890 116 chr2L 6400848 6400879 chr2L 6401143 6401173 14 293 2.5 4.0 3.2 3.3 325 chr2L 6400848 intron CG42368 - chr2L 6401010 intron CG42368 - chr2L 6401173 intron CG42368 - chr2L_14_6400001 chr2L_6400001 RAL-890 117 chr2L 6426854 6426885 chr2L 6445114 6445145 roo 15 18259 3.0 3.5 3.2 3.6 18291 chr2L 6426854 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445145 exon CG9527 - chr2L_15_6435001 chr2L_6435001 RAL-890 118 chr2L 6544370 6544395 chr2L 6544462 6544487 11 92 4.5 2.5 3.5 2.4 117 chr2L 6544370 intron eya - chr2L 6544428 intron eya - chr2L 6544487 intron eya - chr2L_11_6540001 chr2L_6540001 RAL-890 119 chr2L 6590093 6590119 chr2L 6590171 6590173 6 72 4.0 3.5 3.8 1.2 80 chr2L 6590093 intron CG11319 - chr2L 6590133 intron CG11319 - chr2L 6590173 intron CG11319 - chr2L_6_6590001 chr2L_6590001 RAL-890 120 chr2L 6599636 6599669 chr2L 6599717 6599751 5 81 3.0 1.5 2.2 1.6 115 chr2L 6599636 intron CG11319 - chr2L 6599694 intron CG11319 - chr2L 6599751 intron CG11319 - chr2L_5_6595001 chr2L_6595001 RAL-890 121 chr2L 6799542 6799558 chr2L 6799628 6799646 7 87 3.5 3.5 3.5 1.6 104 chr2L 6799542 5` UTR CR43610 + chr2L 6799594 5` UTR CR43610 + chr2L 6799646 intergenic CR43610 +,CG17376 - chr2L_7_6795001 chr2L_6795001 RAL-890 122 chr2L 6876781 6876800 chr2L 6882966 6882967 diver 5 6185 2.5 3.0 2.8 1.3 6186 chr2L 6876781 intron Nlg2 + chr2L 6879874 intron Nlg2 + chr2L 6882967 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-890 123 chr2L 6891446 6891471 chr2L 6891544 6891569 12 98 2.0 4.0 3.0 3.0 123 chr2L 6891446 intron Nlg2 + chr2L 6891508 intron Nlg2 + chr2L 6891569 intron Nlg2 + chr2L_12_6890001 chr2L_6890001 RAL-890 124 chr2L 7043516 7043530 chr2L 7043603 7043617 5 87 3.5 3.5 3.5 1.1 101 chr2L 7043516 intron milt + chr2L 7043566 intron milt + chr2L 7043617 intron milt + chr2L_5_7040001 chr2L_7040001 RAL-890 125 chr2L 7126868 7126878 chr2L 7126947 7126957 4 79 1.5 0.0 0.8 2.2 89 chr2L 7126868 intron Pvf3 - chr2L 7126912 intron Pvf3 - chr2L 7126957 intron Pvf3 - chr2L_4_7125001 chr2L_7125001 RAL-890 126 chr2L 7335204 7335231 chr2L 7335301 7335328 6 97 3.0 1.5 2.2 1.9 124 chr2L 7335204 intron Wnt6 + chr2L 7335266 intron Wnt6 + chr2L 7335328 intron Wnt6 + chr2L_6_7335001 chr2L_7335001 RAL-890 127 chr2L 7337003 7337028 chr2L 7337080 7337105 6 76 1.0 3.0 2.0 2.0 102 chr2L 7337003 intron Wnt6 + chr2L 7337054 intron Wnt6 + chr2L 7337105 intron Wnt6 + chr2L_6_7335001 chr2L_7335001 RAL-890 128 chr2L 7351048 7351080 chr2L 7351156 7351182 7 106 1.5 0.5 1.0 3.5 134 chr2L 7351048 intron Wnt6 + chr2L 7351115 intron Wnt6 + chr2L 7351182 exon Wnt6 + chr2L_7_7350001 chr2L_7350001 RAL-890 129 chr2L 7432233 7432258 chr2L 7432315 7432340 12 81 4.0 5.0 4.5 2.2 107 chr2L 7432233 intron CG5958 - chr2L 7432286 intron CG5958 - chr2L 7432340 intron CG5958 - chr2L_12_7430001 chr2L_7430001 RAL-890 130 chr2L 7459196 7459212 chr2L 7459357 7459373 4 161 3.5 0.0 1.8 1.4 177 chr2L 7459196 intron Gr28b - chr2L 7459284 intron Gr28b - chr2L 7459373 intron Gr28b - chr2L_4_7455001 chr2L_7455001 RAL-890 131 chr2L 7461047 7461080 chr2L 7461302 7461337 15 255 3.5 6.0 4.8 2.6 290 chr2L 7461047 intron Gr28b - chr2L 7461192 intron Gr28b - chr2L 7461337 intron Gr28b - chr2L_15_7460001 chr2L_7460001 RAL-890 132 chr2L 7489695 7489715 chr2L 7489784 7489804 5 89 8.0 4.5 6.2 0.7 109 chr2L 7489695 intron Ziz - chr2L 7489750 intron Ziz - chr2L 7489804 intron Ziz - chr2L_5_7485001 chr2L_7485001 RAL-890 133 chr2L 7557084 7557102 chr2L 7557447 7557465 4 363 1.0 4.5 2.8 1.1 381 chr2L 7557084 intron RapGAP1 - chr2L 7557274 intron RapGAP1 - chr2L 7557465 intron RapGAP1 - chr2L_4_7555001 chr2L_7555001 RAL-890 134 chr2L 7579191 7579203 chr2L 7579382 7579394 BS 5 191 5.0 0.0 2.5 1.4 203 chr2L 7579191 intergenic RapGAP1 - chr2L 7579292 intergenic RapGAP1 - chr2L 7579394 intergenic RapGAP1 - chr2L_5_7575001 chr2L_7575001 RAL-890 135 chr2L 7629158 7629192 chr2L 7629245 7629279 11 85 0.0 4.5 2.2 3.4 121 chr2L 7629158 intergenic not near genes chr2L 7629218 intergenic not near genes chr2L 7629279 intergenic not near genes chr2L_11_7625001 chr2L_7625001 RAL-890 136 chr2L 7679843 7679875 chr2L 7679931 7679962 12 88 2.0 2.5 2.2 3.8 119 chr2L 7679843 intron Myo28B1 + chr2L 7679902 intron Myo28B1 + chr2L 7679962 intron Myo28B1 + chr2L_12_7675001 chr2L_7675001 RAL-890 137 chr2L 7829489 7829518 chr2L 7829582 7829613 14 95 6.5 3.5 5.0 2.3 124 chr2L 7829489 intron mts + chr2L 7829551 intron mts + chr2L 7829613 intron mts + chr2L_14_7825001 chr2L_7825001 RAL-890 138 chr2L 7841287 7841316 chr2L 7841472 7841502 9 183 5.0 4.5 4.8 1.6 215 chr2L 7841287 intergenic CG14537 + chr2L 7841394 intergenic CG14537 + chr2L 7841502 intergenic CG14537 + chr2L_9_7840001 chr2L_7840001 RAL-890 139 chr2L 7912189 7912221 chr2L 7912265 7912297 9 76 4.0 1.5 2.8 2.4 108 chr2L 7912189 intron Snoo - chr2L 7912243 intron Snoo - chr2L 7912297 intron Snoo - chr2L_9_7910001 chr2L_7910001 RAL-890 140 chr2L 7922743 7922769 chr2L 7922824 7922846 10 78 4.5 3.0 3.8 2.1 103 chr2L 7922743 intron Snoo - chr2L 7922794 intron Snoo - chr2L 7922846 intron Snoo - chr2L_10_7920001 chr2L_7920001 RAL-890 141 chr2L 7959041 7959061 chr2L 7960452 7960472 pogo 7 1411 3.0 0.0 1.5 2.8 1431 chr2L 7959041 intron Snoo - chr2L 7959756 intron Snoo - chr2L 7960472 intron Snoo - chr2L_7_7955001 chr2L_7955001 RAL-890 142 chr2L 7977087 7977106 chr2L 7984064 7984081 297 4 6975 2.0 1.5 1.8 1.4 6994 chr2L 7977087 intron Snoo - chr2L 7980584 intron Snoo - chr2L 7984081 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-890 143 chr2L 8003037 8003061 chr2L 8003119 8003143 5 82 1.0 3.5 2.2 1.6 106 chr2L 8003037 intron Wwox - chr2L 8003090 intron Wwox - chr2L 8003143 intron Wwox - chr2L_5_8000001 chr2L_8000001 RAL-890 144 chr2L 8013611 8013632 chr2L 8018815 8018836 copia 9 5204 5.0 0.0 2.5 2.6 5225 chr2L 8013611 intron Tg + chr2L 8016224 intron Tg + chr2L 8018836 intron Tg + chr2L_9_8015001 chr2L_8015001 RAL-890 145 chr2L 8018819 8018837 chr2L 8023603 8023621 Doc 4 4783 0.0 6.5 3.2 1.0 4802 chr2L 8018819 intron Tg + chr2L 8021220 intron Tg + chr2L 8023621 intron Tg + chr2L_4_8020001 chr2L_8020001 RAL-890 146 chr2L 8044095 8044129 chr2L 8044174 8044208 8 78 2.0 2.5 2.2 2.5 113 chr2L 8044095 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044208 intron CG7466 + chr2L_8_8040001 chr2L_8040001 RAL-890 147 chr2L 8166047 8166063 chr2L 8166137 8166152 6 90 3.5 3.0 3.2 1.4 105 chr2L 8166047 intron Piezo + chr2L 8166100 intron Piezo + chr2L 8166152 intron Piezo + chr2L_6_8165001 chr2L_8165001 RAL-890 148 chr2L 8266206 8266231 chr2L 8266340 8266364 6 134 2.0 2.0 2.0 2.0 158 chr2L 8266206 intron Btk29A - chr2L 8266285 intron Btk29A - chr2L 8266364 intron Btk29A - chr2L_6_8265001 chr2L_8265001 RAL-890 149 chr2L 8271622 8271771 chr2L 8271698 8271872 9 84 1.5 0.0 0.8 5.0 250 chr2L 8271622 intron Btk29A - chr2L 8271747 intron Btk29A - chr2L 8271872 intron Btk29A - chr2L_9_8270001 chr2L_8270001 RAL-890 150 chr2L 8334459 8334482 chr2L 8334538 8334561 8 79 4.0 7.5 5.8 1.2 102 chr2L 8334459 intergenic not near genes chr2L 8334510 intergenic not near genes chr2L 8334561 intergenic not near genes chr2L_8_8330001 chr2L_8330001 RAL-890 151 chr2L 8452423 8452452 chr2L 8461591 8461623 roo 16 9171 5.0 4.5 4.8 2.8 9200 chr2L 8452423 intron fu12 - chr2L 8457023 intron fu12 - chr2L 8461623 intron fu12 - chr2L_16_8455001 chr2L_8455001 RAL-890 152 chr2L 8461857 8461864 chr2L 8461937 8461945 4 81 5.0 6.5 5.8 0.6 88 chr2L 8461857 intron fu12 - chr2L 8461901 intron fu12 - chr2L 8461945 intron fu12 - chr2L_4_8460001 chr2L_8460001 RAL-890 153 chr2L 8461874 8461879 chr2L 8461922 8461960 4 73 2.0 5.0 3.5 0.9 86 chr2L 8461874 intron fu12 - chr2L 8461917 intron fu12 - chr2L 8461960 intron fu12 - chr2L_4_8460001 chr2L_8460001 RAL-890 154 chr2L 8538168 8538179 chr2L 8538244 8538255 8 76 4.5 0.0 2.2 2.5 87 chr2L 8538168 intron CG17834 + chr2L 8538212 intron CG17834 + chr2L 8538255 intron CG17834 + chr2L_8_8535001 chr2L_8535001 RAL-890 155 chr2L 8701538 8701571 chr2L 8701615 8701648 8 77 3.0 4.5 3.8 1.7 110 chr2L 8701538 intron Hnf4 - chr2L 8701593 intron Hnf4 - chr2L 8701648 intron Hnf4 - chr2L_8_8700001 chr2L_8700001 RAL-890 156 chr2L 8704878 8704911 chr2L 8705097 8705131 9 217 5.0 1.0 3.0 2.2 253 chr2L 8704878 intron,5` UTR Hnf4 -,CR44992 + chr2L 8705004 intron,5` UTR Hnf4 -,CR44992 + chr2L 8705131 intron,5` UTR Hnf4 -,CR44992 + chr2L_9_8705001 chr2L_8705001 RAL-890 157 chr2L 8723113 8723142 chr2L 8731490 8731519 Tirant 8 8377 2.0 1.5 1.8 2.9 8406 chr2L 8723113 intron raw - chr2L 8727316 intron raw - chr2L 8731519 intron raw - chr2L_8_8725001 chr2L_8725001 RAL-890 158 chr2L 8795004 8795038 chr2L 8795093 8795127 17 89 2.5 4.5 3.5 3.8 123 chr2L 8795004 intergenic not near genes chr2L 8795066 intergenic not near genes chr2L 8795127 intergenic not near genes chr2L_17_8795001 chr2L_8795001 RAL-890 159 chr2L 8820930 8820954 chr2L 8821009 8821033 8 79 1.0 1.5 1.2 3.6 103 chr2L 8820930 intergenic not near genes chr2L 8820982 intergenic not near genes chr2L 8821033 intergenic not near genes chr2L_8_8820001 chr2L_8820001 RAL-890 160 chr2L 8900380 8900413 chr2L 8900456 8900470 9 73 0.5 2.0 1.2 4.1 90 chr2L 8900380 intron CG34398 + chr2L 8900425 intron CG34398 + chr2L 8900470 intron CG34398 + chr2L_9_8900001 chr2L_8900001 RAL-890 161 chr2L 8992473 8992489 chr2L 8992551 8992567 7 78 0.0 5.0 2.5 2.0 94 chr2L 8992473 intron CG9555 + chr2L 8992520 intron CG9555 + chr2L 8992567 intron CG9555 + chr2L_7_8990001 chr2L_8990001 RAL-890 162 chr2L 8997264 8997293 chr2L 8997629 8997657 5 365 29.5 26.5 28.0 0.2 393 chr2L 8997264 5` UTR alien - chr2L 8997460 intergenic alien -,CG18661 + chr2L 8997657 5` UTR CG18661 + chr2L_5_8995001 chr2L_8995001 RAL-890 163 chr2L 9000279 9000308 chr2L 9007789 9007818 roo 9 7510 7.5 3.5 5.5 1.4 7539 chr2L 9000279 intergenic Try29F + chr2L 9004048 intergenic not near genes chr2L 9007818 intergenic not near genes chr2L_9_9000001 chr2L_9000001 RAL-890 164 chr2L 9040035 9040055 chr2L 9040122 9040142 6 87 2.0 2.0 2.0 2.0 107 chr2L 9040035 intergenic not near genes chr2L 9040088 intergenic not near genes chr2L 9040142 intergenic not near genes chr2L_6_9040001 chr2L_9040001 RAL-890 165 chr2L 9053410 9053424 chr2L 9053645 9053659 9 234 3.0 2.5 2.8 2.4 249 chr2L 9053410 exon CG31708 - chr2L 9053534 intron CG31708 - chr2L 9053659 intron CG31708 - chr2L_9_9050001 chr2L_9050001 RAL-890 166 chr2L 9084338 9084339 chr2L 16217660 16217660 6 7133322 9.0 13.5 11.2 0.5 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-890 167 chr2L 9264345 9264381 chr2L 9264445 9264481 11 100 3.5 2.0 2.8 2.9 136 chr2L 9264345 intron Ggamma30A + chr2L 9264413 intron Ggamma30A + chr2L 9264481 intron Ggamma30A + chr2L_11_9260001 chr2L_9260001 RAL-890 168 chr2L 9283221 9283424 chr2L 9283319 9283506 5 88 4.5 0.0 2.2 1.6 285 chr2L 9283221 intron Ggamma30A + chr2L 9283364 intron Ggamma30A + chr2L 9283506 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 RAL-890 169 chr2L 9286954 9286987 chr2L 9287032 9287057 11 76 2.0 0.0 1.0 5.5 103 chr2L 9286954 intron Ggamma30A + chr2L 9287006 intron Ggamma30A + chr2L 9287057 intron Ggamma30A + chr2L_11_9285001 chr2L_9285001 RAL-890 170 chr2L 9303472 9303493 chr2L 9303549 9303570 9 76 0.0 5.0 2.5 2.6 98 chr2L 9303472 intergenic not near genes chr2L 9303521 intergenic not near genes chr2L 9303570 intergenic not near genes chr2L_9_9300001 chr2L_9300001 RAL-890 171 chr2L 9304508 9304517 chr2L 9304583 9304593 6 78 2.0 3.5 2.8 1.6 85 chr2L 9304508 3` UTR CR42844 - chr2L 9304550 3` UTR CR42844 - chr2L 9304593 3` UTR CR42844 - chr2L_6_9300001 chr2L_9300001 RAL-890 172 chr2L 9393498 9393531 chr2L 9396465 9396498 jockey 11 2966 3.5 4.0 3.8 2.3 3000 chr2L 9393498 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396498 intron Shawl - chr2L_11_9390001 chr2L_9390001 RAL-890 173 chr2L 9454977 9455000 chr2L 9455079 9455102 9 102 4.5 2.0 3.2 2.1 125 chr2L 9454977 intron numb + chr2L 9455040 intron numb + chr2L 9455102 intron numb + chr2L_9_9455001 chr2L_9455001 RAL-890 174 chr2L 9470102 9470115 chr2L 9470181 9470194 5 79 1.0 2.0 1.5 2.0 92 chr2L 9470102 intergenic CR43769 + chr2L 9470148 intergenic CR43769 + chr2L 9470194 intergenic CR43769 + chr2L_5_9470001 chr2L_9470001 RAL-890 175 chr2L 9488074 9488101 chr2L 9488161 9488186 9 85 2.5 0.5 1.5 3.6 112 chr2L 9488074 intergenic not near genes chr2L 9488130 intergenic not near genes chr2L 9488186 intergenic not near genes chr2L_9_9485001 chr2L_9485001 RAL-890 176 chr2L 9619498 9619522 chr2L 9619835 9619859 5 336 2.0 4.5 3.2 1.2 361 chr2L 9619498 intron GlcAT-S + chr2L 9619678 intron GlcAT-S + chr2L 9619859 intron GlcAT-S + chr2L_5_9615001 chr2L_9615001 RAL-890 177 chr2L 9673821 9673845 chr2L 9673920 9673944 9 99 2.5 3.5 3.0 2.2 123 chr2L 9673821 intergenic not near genes chr2L 9673882 intergenic not near genes chr2L 9673944 intergenic not near genes chr2L_9_9670001 chr2L_9670001 RAL-890 178 chr2L 9973731 9973759 chr2L 9980850 9980878 HMS-Beagle 10 7118 2.0 5.0 3.5 2.2 7147 chr2L 9973731 intergenic not near genes chr2L 9977304 intergenic not near genes chr2L 9980878 intergenic not near genes chr2L_10_9975001 chr2L_9975001 RAL-890 179 chr2L 10129171 10129205 chr2L 10129265 10129299 6 94 0.0 1.5 0.8 3.3 128 chr2L 10129171 intron CG44153 - chr2L 10129235 intron CG44153 - chr2L 10129299 intron CG44153 - chr2L_6_10125001 chr2L_10125001 RAL-890 180 chr2L 10136244 10136254 chr2L 10136321 10136334 4 80 2.5 0.5 1.5 1.6 90 chr2L 10136244 intron CG44153 - chr2L 10136289 intron CG44153 - chr2L 10136334 intron CG44153 - chr2L_4_10135001 chr2L_10135001 RAL-890 181 chr2L 10156335 10156353 chr2L 10163805 10163823 blood 5 7469 6.5 3.5 5.0 0.8 7488 chr2L 10156335 intron,3` UTR CG44153 -,CG4839 + chr2L 10160079 intron CG44153 - chr2L 10163823 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-890 182 chr2L 10180591 10180606 chr2L 10180678 10180692 7 87 0.5 0.0 0.2 5.8 101 chr2L 10180591 intergenic CG44153 - chr2L 10180642 intergenic CG44153 - chr2L 10180692 intergenic CG44153 - chr2L_7_10180001 chr2L_10180001 RAL-890 183 chr2L 10348392 10348404 chr2L 10348475 10348487 4 83 0.0 0.5 0.2 3.3 95 chr2L 10348392 intron CG34367 - chr2L 10348440 intron CG34367 - chr2L 10348487 intron CG34367 - chr2L_4_10345001 chr2L_10345001 RAL-890 184 chr2L 10480305 10480315 chr2L 10480495 10480505 5 192 0.0 0.5 0.2 4.2 200 chr2L 10480305 intron RluA-2 + chr2L 10480405 intron RluA-2 + chr2L 10480505 intron RluA-2 + chr2L_5_10480001 chr2L_10480001 RAL-890 185 chr2L 10515367 10515390 chr2L 10515460 10515483 10 93 2.0 4.0 3.0 2.5 116 chr2L 10515367 intron,intron CG45083 -,Fatp - chr2L 10515425 intron,intron CG45083 -,Fatp - chr2L 10515483 intron,intron CG45083 -,Fatp - chr2L_10_10515001 chr2L_10515001 RAL-890 186 chr2L 10572708 10572735 chr2L 10572789 10572816 8 81 2.0 4.0 3.0 2.0 108 chr2L 10572708 intron Trim9 + chr2L 10572762 intron Trim9 + chr2L 10572816 intron Trim9 + chr2L_8_10570001 chr2L_10570001 RAL-890 187 chr2L 10580790 10580822 chr2L 10580871 10580903 8 79 2.5 3.5 3.0 2.0 113 chr2L 10580790 intron Trim9 + chr2L 10580846 intron Trim9 + chr2L 10580903 intron Trim9 + chr2L_8_10580001 chr2L_10580001 RAL-890 188 chr2L 10592843 10592875 chr2L 10600505 10600536 opus 12 7662 2.5 5.0 3.8 2.5 7693 chr2L 10592843 intron Trim9 + chr2L 10596690 intron Trim9 + chr2L 10600536 intron Trim9 + chr2L_12_10595001 chr2L_10595001 RAL-890 189 chr2L 10634763 10634788 chr2L 10634843 10634868 14 80 1.0 2.0 1.5 5.6 105 chr2L 10634763 intron CG7329 - chr2L 10634816 intron CG7329 - chr2L 10634868 intron CG7329 - chr2L_14_10630001 chr2L_10630001 RAL-890 190 chr2L 10688549 10688571 chr2L 10688625 10688647 4 76 0.0 3.0 1.5 1.6 98 chr2L 10688549 intergenic CG7294 - chr2L 10688598 intergenic CG7294 - chr2L 10688647 intergenic CG7294 - chr2L_4_10685001 chr2L_10685001 RAL-890 191 chr2L 10862849 10862869 chr2L 10864458 10864458 Rt1c 6 1607 2.5 5.5 4.0 1.2 1609 chr2L 10862849 3` UTR CR43807 - chr2L 10863654 intron CR43807 - chr2L 10864458 intron CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-890 192 chr2L 10912988 10913000 chr2L 10913067 10913077 4 78 4.5 5.0 4.8 0.7 89 chr2L 10912988 intergenic not near genes chr2L 10913032 intergenic not near genes chr2L 10913077 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-890 193 chr2L 10919800 10919828 chr2L 10919889 10919917 4 88 4.5 3.5 4.0 0.8 117 chr2L 10919800 intron dpr2 - chr2L 10919858 intron dpr2 - chr2L 10919917 intron dpr2 - chr2L_4_10915001 chr2L_10915001 RAL-890 194 chr2L 10946949 10946964 chr2L 10956163 10956179 roo 6 9215 2.5 3.5 3.0 1.5 9230 chr2L 10946949 intron dpr2 - chr2L 10951564 intron dpr2 - chr2L 10956179 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-890 195 chr2L 10946966 10946974 chr2L 10956157 10956171 roo 5 9206 2.5 3.0 2.8 1.3 9205 chr2L 10946966 intron dpr2 - chr2L 10951568 intron dpr2 - chr2L 10956171 intron dpr2 - chr2L_5_10950001 chr2L_10950001 RAL-890 196 chr2L 10996316 10996343 chr2L 10996392 10996419 4 76 0.0 1.0 0.5 2.7 103 chr2L 10996316 3` UTR CG16833 + chr2L 10996368 3` UTR CG16833 + chr2L 10996419 3` UTR CG16833 + chr2L_4_10995001 chr2L_10995001 RAL-890 197 chr2L 11224056 11224088 chr2L 11224167 11224199 6 111 2.0 2.0 2.0 2.0 143 chr2L 11224056 intron ab + chr2L 11224128 intron ab + chr2L 11224199 intron ab + chr2L_6_11220001 chr2L_11220001 RAL-890 198 chr2L 11248584 11248591 chr2L 11248662 11248674 4 82 2.0 4.0 3.0 1.0 90 chr2L 11248584 intron ab + chr2L 11248629 intron ab + chr2L 11248674 intron ab + chr2L_4_11245001 chr2L_11245001 RAL-890 199 chr2L 11292399 11292406 chr2L 11292480 11292487 5 81 1.5 6.5 4.0 1.0 88 chr2L 11292399 intergenic not near genes chr2L 11292443 intergenic not near genes chr2L 11292487 intergenic not near genes chr2L_5_11290001 chr2L_11290001 RAL-890 200 chr2L 11357985 11358011 chr2L 11358063 11358089 4 78 2.0 2.0 2.0 1.3 104 chr2L 11357985 intergenic not near genes chr2L 11358037 intergenic not near genes chr2L 11358089 intergenic not near genes chr2L_4_11355001 chr2L_11355001 RAL-890 201 chr2L 11380610 11380626 chr2L 11380687 11380703 4 77 0.5 1.5 1.0 2.0 93 chr2L 11380610 intergenic not near genes chr2L 11380656 intergenic not near genes chr2L 11380703 intergenic not near genes chr2L_4_11380001 chr2L_11380001 RAL-890 202 chr2L 11397590 11397610 chr2L 11397699 11397720 7 109 2.5 0.0 1.2 3.2 130 chr2L 11397590 intergenic not near genes chr2L 11397655 intergenic not near genes chr2L 11397720 intergenic not near genes chr2L_7_11395001 chr2L_11395001 RAL-890 203 chr2L 11399527 11399534 chr2L 11399604 11399610 4 76 1.5 1.0 1.2 1.8 83 chr2L 11399527 intergenic not near genes chr2L 11399568 intergenic not near genes chr2L 11399610 intergenic not near genes chr2L_4_11395001 chr2L_11395001 RAL-890 204 chr2L 11540584 11540603 chr2L 11547986 11548005 Tabor 4 7402 3.5 1.5 2.5 1.1 7421 chr2L 11540584 intergenic not near genes chr2L 11544294 intergenic not near genes chr2L 11548005 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-890 205 chr2L 11563637 11563661 chr2L 11568840 11568865 copia 5 5202 3.0 3.0 3.0 1.2 5228 chr2L 11563637 intergenic not near genes chr2L 11566251 intergenic not near genes chr2L 11568865 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-890 206 chr2L 11601604 11601618 chr2L 11601698 11601712 5 94 1.0 2.5 1.8 1.8 108 chr2L 11601604 intron kek2 + chr2L 11601658 intron kek2 + chr2L 11601712 intron kek2 + chr2L_5_11600001 chr2L_11600001 RAL-890 207 chr2L 11610541 11610552 chr2L 11610620 11610631 6 79 7.0 1.5 4.2 1.2 90 chr2L 11610541 intron,3` UTR kek2 +,spag4 - chr2L 11610586 intron,3` UTR kek2 +,spag4 - chr2L 11610631 intron,3` UTR kek2 +,spag4 - chr2L_6_11610001 chr2L_11610001 RAL-890 208 chr2L 11614076 11614083 chr2L 11615551 11615556 hopper2 4 1480 1.5 4.5 3.0 1.0 1480 chr2L 11614076 intron kek2 + chr2L 11614816 intron kek2 + chr2L 11615556 intron kek2 + chr2L_4_11610001 chr2L_11610001 RAL-890 209 chr2L 11713510 11713532 chr2L 11720976 11721000 blood 11 7468 3.0 4.5 3.8 2.3 7490 chr2L 11713510 intergenic not near genes chr2L 11717255 intergenic not near genes chr2L 11721000 intergenic CR44143 + chr2L_11_11715001 chr2L_11715001 RAL-890 210 chr2L 11781035 11781194 chr2L 11781119 11781270 4 80 0.0 0.0 0.0 4.0 235 chr2L 11781035 intergenic not near genes chr2L 11781152 intergenic not near genes chr2L 11781270 intergenic not near genes chr2L_4_11780001 chr2L_11780001 RAL-890 211 chr2L 11841347 11841369 chr2L 11841444 11841466 5 97 1.5 0.0 0.8 2.8 119 chr2L 11841347 intron Pde1c - chr2L 11841406 intron Pde1c - chr2L 11841466 intron Pde1c - chr2L_5_11840001 chr2L_11840001 RAL-890 212 chr2L 11907478 11907491 chr2L 11907594 11907606 8 116 1.0 8.0 4.5 1.5 128 chr2L 11907478 intron Pde1c - chr2L 11907542 intron Pde1c - chr2L 11907606 intron Pde1c - chr2L_8_11905001 chr2L_11905001 RAL-890 213 chr2L 11979585 11979603 chr2L 11979671 11979689 7 86 5.0 6.5 5.8 1.0 104 chr2L 11979585 intergenic not near genes chr2L 11979637 intergenic not near genes chr2L 11979689 intergenic not near genes chr2L_7_11975001 chr2L_11975001 RAL-890 214 chr2L 12065843 12065863 chr2L 12065920 12065940 8 77 3.5 2.5 3.0 2.0 97 chr2L 12065843 intron CG14946 - chr2L 12065892 intron CG14946 - chr2L 12065940 intron CG14946 - chr2L_8_12065001 chr2L_12065001 RAL-890 215 chr2L 12067330 12067357 chr2L 12074382 12074409 297 6 7052 2.0 2.5 2.2 1.9 7079 chr2L 12067330 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074409 intergenic not near genes chr2L_6_12070001 chr2L_12070001 RAL-890 216 chr2L 12266255 12266281 chr2L 12266337 12266361 9 82 3.0 3.0 3.0 2.2 106 chr2L 12266255 intron aret + chr2L 12266308 intron aret + chr2L 12266361 intron aret + chr2L_9_12265001 chr2L_12265001 RAL-890 217 chr2L 12273017 12273039 chr2L 12273101 12273123 6 84 2.0 4.0 3.0 1.5 106 chr2L 12273017 intron aret + chr2L 12273070 intron aret + chr2L 12273123 intron aret + chr2L_6_12270001 chr2L_12270001 RAL-890 218 chr2L 12283903 12283924 chr2L 12284028 12284048 5 125 3.5 0.5 2.0 1.7 145 chr2L 12283903 intron aret + chr2L 12283976 intron aret + chr2L 12284048 intron aret + chr2L_5_12280001 chr2L_12280001 RAL-890 219 chr2L 12286952 12286965 chr2L 12287033 12287046 6 81 4.5 4.0 4.2 1.2 94 chr2L 12286952 intron aret + chr2L 12286999 intron aret + chr2L 12287046 intron aret + chr2L_6_12285001 chr2L_12285001 RAL-890 220 chr2L 12345413 12345441 chr2L 12345491 12345505 5 75 2.0 0.0 1.0 2.5 92 chr2L 12345413 intron bru-2 + chr2L 12345459 intron bru-2 + chr2L 12345505 intron bru-2 + chr2L_5_12345001 chr2L_12345001 RAL-890 221 chr2L 12366865 12366888 chr2L 12366951 12366973 5 86 2.0 3.0 2.5 1.4 108 chr2L 12366865 intron bru-2 + chr2L 12366919 intron bru-2 + chr2L 12366973 intron bru-2 + chr2L_5_12365001 chr2L_12365001 RAL-890 222 chr2L 12420973 12420993 chr2L 12421303 12421322 4 330 2.0 0.0 1.0 2.0 349 chr2L 12420973 intron vir-1 - chr2L 12421148 intron vir-1 - chr2L 12421322 intron vir-1 - chr2L_4_12420001 chr2L_12420001 RAL-890 223 chr2L 12480543 12480567 chr2L 12480620 12480644 7 77 3.0 2.5 2.8 1.8 101 chr2L 12480543 intron bun - chr2L 12480594 intron bun - chr2L 12480644 intron bun - chr2L_7_12480001 chr2L_12480001 RAL-890 224 chr2L 12487885 12487892 chr2L 12487966 12487973 4 81 8.5 5.0 6.8 0.5 88 chr2L 12487885 intron bun - chr2L 12487929 intron bun - chr2L 12487973 intron bun - chr2L_4_12485001 chr2L_12485001 RAL-890 225 chr2L 12487898 12487917 chr2L 12487965 12487998 8 79 3.0 4.5 3.8 1.7 100 chr2L 12487898 intron bun - chr2L 12487948 intron bun - chr2L 12487998 intron bun - chr2L_8_12485001 chr2L_12485001 RAL-890 226 chr2L 12490087 12490109 chr2L 12490226 12490248 5 139 4.0 2.5 3.2 1.2 161 chr2L 12490087 intron bun - chr2L 12490168 intron bun - chr2L 12490248 intron bun - chr2L_5_12490001 chr2L_12490001 RAL-890 227 chr2L 12491494 12491509 chr2L 12491595 12491610 5 101 2.0 2.0 2.0 1.7 116 chr2L 12491494 intron bun - chr2L 12491552 intron bun - chr2L 12491610 intron bun - chr2L_5_12490001 chr2L_12490001 RAL-890 228 chr2L 12518533 12518566 chr2L 12518791 12518794 11 256 2.5 3.0 2.8 2.9 261 chr2L 12518533 intron bun - chr2L 12518664 intron bun - chr2L 12518794 intron bun - chr2L_11_12515001 chr2L_12515001 RAL-890 229 chr2L 12529235 12529266 chr2L 12529387 12529418 10 151 4.0 4.5 4.2 1.9 183 chr2L 12529235 intron bun - chr2L 12529326 intron bun - chr2L 12529418 intron bun - chr2L_10_12525001 chr2L_12525001 RAL-890 230 chr2L 12558338 12558349 chr2L 12565448 12565478 HMS-Beagle 5 7125 1.5 2.5 2.0 1.7 7140 chr2L 12558338 intergenic not near genes chr2L 12561908 intergenic not near genes chr2L 12565478 intergenic not near genes chr2L_5_12560001 chr2L_12560001 RAL-890 231 chr2L 12638777 12638808 chr2L 12638880 12638911 11 103 3.0 2.5 2.8 2.9 134 chr2L 12638777 intron Ref2 - chr2L 12638844 intron Ref2 - chr2L 12638911 intron Ref2 - chr2L_11_12635001 chr2L_12635001 RAL-890 232 chr2L 12693843 12693872 chr2L 12693919 12693949 14 77 0.5 0.5 0.5 9.3 106 chr2L 12693843 exon CG6153 + chr2L 12693896 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693949 3` UTR CG5780 - chr2L_14_12690001 chr2L_12690001 RAL-890 233 chr2L 12728922 12728943 chr2L 12729161 12729183 pogo 7 240 5.0 3.0 4.0 1.4 261 chr2L 12728922 intron MRP + chr2L 12729052 intron MRP + chr2L 12729183 intron MRP + chr2L_7_12725001 chr2L_12725001 RAL-890 234 chr2L 12731064 12731090 chr2L 12735831 12735857 F-element 17 4767 2.5 4.0 3.2 4.0 4793 chr2L 12731064 intron MRP + chr2L 12733460 intron MRP + chr2L 12735857 intron MRP + chr2L_17_12730001 chr2L_12730001 RAL-890 235 chr2L 12739171 12739202 chr2L 12743952 12743983 Doc 9 4780 1.5 1.0 1.2 4.1 4812 chr2L 12739171 exon MRP + chr2L 12741577 intron MRP + chr2L 12743983 exon MRP + chr2L_9_12740001 chr2L_12740001 RAL-890 236 chr2L 12751313 12751341 chr2L 12751396 12751424 6 82 0.0 3.0 1.5 2.4 111 chr2L 12751313 intergenic not near genes chr2L 12751368 intergenic not near genes chr2L 12751424 intergenic not near genes chr2L_6_12750001 chr2L_12750001 RAL-890 237 chr2L 12791602 12791632 chr2L 12795277 12795307 F-element 14 3673 5.5 2.5 4.0 2.8 3705 chr2L 12791602 intergenic not near genes chr2L 12793454 intergenic not near genes chr2L 12795307 intergenic not near genes chr2L_14_12790001 chr2L_12790001 RAL-890 238 chr2L 12807449 12807462 chr2L 12807528 12807541 8 78 2.0 4.0 3.0 2.0 92 chr2L 12807449 intergenic CR43818 - chr2L 12807495 intergenic CR43818 - chr2L 12807541 intergenic CR43818 - chr2L_8_12805001 chr2L_12805001 RAL-890 239 chr2L 12861695 12861722 chr2L 12863159 12863170 hobo 12 1464 4.0 3.5 3.8 2.5 1475 chr2L 12861695 intergenic not near genes chr2L 12862432 intergenic not near genes chr2L 12863170 intergenic not near genes chr2L_12_12860001 chr2L_12860001 RAL-890 240 chr2L 12889029 12889064 chr2L 12889112 12889147 6 80 2.5 4.0 3.2 1.4 118 chr2L 12889029 intergenic not near genes chr2L 12889088 intergenic not near genes chr2L 12889147 intergenic not near genes chr2L_6_12885001 chr2L_12885001 RAL-890 241 chr2L 12894032 12894053 chr2L 12895482 12895518 hobo 4 1456 4.0 5.5 4.8 0.7 1486 chr2L 12894032 intergenic not near genes chr2L 12894775 intergenic not near genes chr2L 12895518 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-890 242 chr2L 12930491 12930497 chr2L 12930567 12930573 4 76 1.0 2.5 1.8 1.4 82 chr2L 12930491 intergenic not near genes chr2L 12930532 intergenic not near genes chr2L 12930573 intergenic not near genes chr2L_4_12930001 chr2L_12930001 RAL-890 243 chr2L 12933848 12933883 chr2L 12941315 12941350 blood 11 7467 2.0 3.0 2.5 3.1 7502 chr2L 12933848 intergenic not near genes chr2L 12937599 intergenic not near genes chr2L 12941350 intergenic not near genes chr2L_11_12935001 chr2L_12935001 RAL-890 244 chr2L 12946791 12946795 chr2L 12946883 12946887 4 92 0.0 0.0 0.0 4.0 96 chr2L 12946791 intergenic not near genes chr2L 12946839 intergenic not near genes chr2L 12946887 intergenic not near genes chr2L_4_12945001 chr2L_12945001 RAL-890 245 chr2L 13093245 13093279 chr2L 13093362 13093386 11 115 1.5 4.0 2.8 2.9 141 chr2L 13093245 intergenic not near genes chr2L 13093316 intergenic not near genes chr2L 13093386 intergenic not near genes chr2L_11_13090001 chr2L_13090001 RAL-890 246 chr2L 13147944 13147961 chr2L 13148025 13148042 5 81 4.5 2.5 3.5 1.1 98 chr2L 13147944 intergenic not near genes chr2L 13147993 intergenic not near genes chr2L 13148042 intergenic not near genes chr2L_5_13145001 chr2L_13145001 RAL-890 247 chr2L 13152230 13152256 chr2L 13152308 13152334 8 77 4.5 1.5 3.0 2.0 104 chr2L 13152230 intergenic not near genes chr2L 13152282 intergenic not near genes chr2L 13152334 intergenic not near genes chr2L_8_13150001 chr2L_13150001 RAL-890 248 chr2L 13204715 13204749 chr2L 13204818 13204852 11 102 3.0 2.0 2.5 3.1 137 chr2L 13204715 intron Pect + chr2L 13204784 intron Pect + chr2L 13204852 intron Pect + chr2L_11_13200001 chr2L_13200001 RAL-890 249 chr2L 13231885 13231905 chr2L 13231996 13232016 9 111 4.5 3.5 4.0 1.8 131 chr2L 13231885 intergenic Prosalpha6T + chr2L 13231950 intergenic Prosalpha6T + chr2L 13232016 intergenic Prosalpha6T + chr2L_9_13230001 chr2L_13230001 RAL-890 250 chr2L 13245037 13245064 chr2L 13245366 13245393 6 329 2.0 6.0 4.0 1.2 356 chr2L 13245037 intergenic snRNA:U5:34A +,CR45330 + chr2L 13245215 intergenic snRNA:U5:34A +,CR45330 + chr2L 13245393 intergenic snRNA:U5:34A + chr2L_6_13245001 chr2L_13245001 RAL-890 251 chr2L 13328752 13328783 chr2L 13328847 13328878 11 94 3.0 3.5 3.2 2.6 126 chr2L 13328752 intron CG43778 - chr2L 13328815 intron CG43778 - chr2L 13328878 intron CG43778 - chr2L_11_13325001 chr2L_13325001 RAL-890 252 chr2L 13398719 13398752 chr2L 13398799 13398832 5 80 1.0 0.5 0.8 2.8 113 chr2L 13398719 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398776 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398832 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_5_13395001 chr2L_13395001 RAL-890 253 chr2L 13449486 13449496 chr2L 13456922 13456929 Quasimodo 6 7435 0.0 6.0 3.0 1.5 7443 chr2L 13449486 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453208 intron CG42784 + chr2L 13456929 intron CG42784 + chr2L_6_13450001 chr2L_13450001 RAL-890 254 chr2L 13481452 13481475 chr2L 13482059 13482082 jockey 6 607 1.5 5.5 3.5 1.3 630 chr2L 13481452 intron CG42784 + chr2L 13481767 intron CG42784 + chr2L 13482082 intron CG42784 + chr2L_6_13480001 chr2L_13480001 RAL-890 255 chr2L 13522133 13522164 chr2L 13527651 13527664 Transpac 7 5512 2.5 3.0 2.8 1.8 5531 chr2L 13522133 intron B4 - chr2L 13524898 intron B4 - chr2L 13527664 intron B4 - chr2L_7_13520001 chr2L_13520001 RAL-890 256 chr2L 13699573 13699585 chr2L 13699649 13699661 4 76 1.5 2.5 2.0 1.3 88 chr2L 13699573 intron CG31814 - chr2L 13699617 intron CG31814 - chr2L 13699661 intron CG31814 - chr2L_4_13695001 chr2L_13695001 RAL-890 257 chr2L 13713555 13713659 chr2L 13713631 13713771 12 99 0.0 0.0 0.0 12.0 216 chr2L 13713555 intron CG31814 - chr2L 13713663 intron CG31814 - chr2L 13713771 intron CG31814 - chr2L_12_13710001 chr2L_13710001 RAL-890 258 chr2L 13761817 13761833 chr2L 13762908 13762944 Doc 7 1108 4.0 2.0 3.0 1.8 1127 chr2L 13761817 intron TM9SF4 + chr2L 13762380 intron TM9SF4 + chr2L 13762944 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-890 259 chr2L 13842141 13842161 chr2L 13842225 13842245 8 84 1.5 5.0 3.2 1.9 104 chr2L 13842141 intron CenG1A + chr2L 13842193 intron CenG1A + chr2L 13842245 intron CenG1A + chr2L_8_13840001 chr2L_13840001 RAL-890 260 chr2L 13853085 13853110 chr2L 13862234 13862259 roo 7 9150 4.0 1.5 2.8 1.8 9174 chr2L 13853085 intron CenG1A + chr2L 13857672 intron CenG1A + chr2L 13862259 intron CenG1A + chr2L_7_13855001 chr2L_13855001 RAL-890 261 chr2L 13944415 13944433 chr2L 13944535 13944553 6 120 0.0 1.0 0.5 4.0 138 chr2L 13944415 intron Ance-3 + chr2L 13944484 intron Ance-3 + chr2L 13944553 intron Ance-3 + chr2L_6_13940001 chr2L_13940001 RAL-890 262 chr2L 14017777 14017796 chr2L 14017868 14017888 12 91 3.5 3.5 3.5 2.7 111 chr2L 14017777 intron bgm + chr2L 14017832 intron bgm + chr2L 14017888 intron bgm + chr2L_12_14015001 chr2L_14015001 RAL-890 263 chr2L 14374778 14374790 chr2L 14374869 14374881 6 91 6.5 1.0 3.8 1.2 103 chr2L 14374778 intergenic not near genes chr2L 14374830 intergenic not near genes chr2L 14374881 intergenic not near genes chr2L_6_14370001 chr2L_14370001 RAL-890 264 chr2L 14378649 14378672 chr2L 14378728 14378751 13 78 8.0 0.0 4.0 2.6 102 chr2L 14378649 3` UTR ppk - chr2L 14378700 3` UTR ppk - chr2L 14378751 3` UTR ppk - chr2L_13_14375001 chr2L_14375001 RAL-890 265 chr2L 14588388 14588413 chr2L 14588540 14588567 6 154 4.0 3.0 3.5 1.3 179 chr2L 14588388 intergenic CG42680 - chr2L 14588478 intergenic CG42680 - chr2L 14588567 intergenic CG42680 - chr2L_6_14585001 chr2L_14585001 RAL-890 266 chr2L 14642577 14642599 chr2L 14651739 14651762 roo 9 9163 2.5 4.5 3.5 2.0 9185 chr2L 14642577 intron osp - chr2L 14647170 intron osp - chr2L 14651762 intron osp - chr2L_9_14645001 chr2L_14645001 RAL-890 267 chr2L 14768931 14768956 chr2L 14769009 14769034 9 78 1.0 1.5 1.2 4.1 103 chr2L 14768931 intergenic not near genes chr2L 14768982 intergenic not near genes chr2L 14769034 intergenic not near genes chr2L_9_14765001 chr2L_14765001 RAL-890 268 chr2L 14803877 14803911 chr2L 14809080 14809108 copia 7 5202 6.5 5.5 6.0 1.0 5231 chr2L 14803877 intergenic not near genes chr2L 14806492 intergenic not near genes chr2L 14809108 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-890 269 chr2L 14817880 14817905 chr2L 14817969 14817970 7 85 2.5 2.5 2.5 2.0 90 chr2L 14817880 intergenic not near genes chr2L 14817925 intergenic not near genes chr2L 14817970 intergenic not near genes chr2L_7_14815001 chr2L_14815001 RAL-890 270 chr2L 14840978 14841008 chr2L 14841065 14841095 8 87 2.0 2.5 2.2 2.5 117 chr2L 14840978 3` UTR CR43805 - chr2L 14841036 3` UTR CR43805 - chr2L 14841095 3` UTR CR43805 - chr2L_8_14840001 chr2L_14840001 RAL-890 271 chr2L 14984386 14984404 chr2L 14991980 14992006 opus 9 7600 9.5 2.0 5.8 1.3 7620 chr2L 14984386 intron mol - chr2L 14988196 intron mol - chr2L 14992006 intron mol - chr2L_9_14985001 chr2L_14985001 RAL-890 272 chr2L 15000855 15000881 chr2L 15000981 15001015 6 131 17.5 12.0 14.8 0.4 160 chr2L 15000855 intergenic not near genes chr2L 15000935 intergenic not near genes chr2L 15001015 intergenic not near genes chr2L_6_15000001 chr2L_15000001 RAL-890 273 chr2L 15003547 15003565 chr2L 15003631 15003649 4 84 4.5 4.0 4.2 0.8 102 chr2L 15003547 intergenic not near genes chr2L 15003598 intergenic not near genes chr2L 15003649 intergenic not near genes chr2L_4_15000001 chr2L_15000001 RAL-890 274 chr2L 15021440 15021460 chr2L 15021516 15021536 5 76 4.5 4.5 4.5 0.9 96 chr2L 15021440 intron GABA-B-R1 + chr2L 15021488 intron GABA-B-R1 + chr2L 15021536 intron GABA-B-R1 + chr2L_5_15020001 chr2L_15020001 RAL-890 275 chr2L 15026020 15026035 chr2L 15026101 15026116 4 81 4.5 0.0 2.2 1.2 96 chr2L 15026020 exon GABA-B-R1 + chr2L 15026068 intron GABA-B-R1 + chr2L 15026116 intron GABA-B-R1 + chr2L_4_15025001 chr2L_15025001 RAL-890 276 chr2L 15053125 15053134 chr2L 15053202 15053211 4 77 0.0 4.0 2.0 1.3 86 chr2L 15053125 intron ck - chr2L 15053168 intron ck - chr2L 15053211 intron ck - chr2L_4_15050001 chr2L_15050001 RAL-890 277 chr2L 15066582 15066588 chr2L 15066675 15066680 5 92 4.5 3.5 4.0 1.0 98 chr2L 15066582 intron,intron vas +,vig - chr2L 15066631 intron,intron vas +,vig - chr2L 15066680 intron,intron vas +,vig - chr2L_5_15065001 chr2L_15065001 RAL-890 278 chr2L 15066589 15066608 chr2L 15066667 15066701 5 87 3.0 2.5 2.8 1.3 112 chr2L 15066589 intron,intron vas +,vig - chr2L 15066645 intron,intron vas +,vig - chr2L 15066701 intron,intron vas +,vig - chr2L_5_15065001 chr2L_15065001 RAL-890 279 chr2L 15082659 15082690 chr2L 15082753 15082784 7 94 5.5 2.0 3.8 1.5 125 chr2L 15082659 intron CG15270 + chr2L 15082722 intron CG15270 + chr2L 15082784 intron CG15270 + chr2L_7_15080001 chr2L_15080001 RAL-890 280 chr2L 15307970 15307986 chr2L 15308046 15308062 8 76 3.0 3.0 3.0 2.0 92 chr2L 15307970 intergenic not near genes chr2L 15308016 intergenic not near genes chr2L 15308062 intergenic not near genes chr2L_8_15305001 chr2L_15305001 RAL-890 281 chr2L 15446058 15446083 chr2L 15453527 15453550 blood 5 7468 2.0 3.5 2.8 1.3 7492 chr2L 15446058 intergenic not near genes chr2L 15449804 intergenic not near genes chr2L 15453550 intergenic not near genes chr2L_5_15445001 chr2L_15445001 RAL-890 282 chr2L 15500823 15500858 chr2L 15500900 15500935 12 77 0.0 1.0 0.5 8.0 112 chr2L 15500823 intron lace + chr2L 15500879 intron lace + chr2L 15500935 intron lace + chr2L_12_15500001 chr2L_15500001 RAL-890 283 chr2L 15510934 15510958 chr2L 15511028 15511052 15 93 4.0 3.5 3.8 3.1 118 chr2L 15510934 intergenic not near genes chr2L 15510993 intergenic not near genes chr2L 15511052 intergenic not near genes chr2L_15_15510001 chr2L_15510001 RAL-890 284 chr2L 15514323 15514329 chr2L 15514407 15514413 4 84 8.0 6.0 7.0 0.5 90 chr2L 15514323 intergenic not near genes chr2L 15514368 intergenic not near genes chr2L 15514413 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-890 285 chr2L 15586412 15586440 chr2L 15593464 15593492 297 6 7052 2.0 3.5 2.8 1.6 7080 chr2L 15586412 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593492 intergenic not near genes chr2L_6_15585001 chr2L_15585001 RAL-890 286 chr2L 15795623 15795650 chr2L 15795797 15795823 10 174 1.0 4.5 2.8 2.6 200 chr2L 15795623 intergenic not near genes chr2L 15795723 intergenic not near genes chr2L 15795823 intergenic not near genes chr2L_10_15795001 chr2L_15795001 RAL-890 287 chr2L 15823361 15823372 chr2L 15823437 15823448 4 76 3.0 0.5 1.8 1.4 87 chr2L 15823361 intergenic CR44601 - chr2L 15823404 intergenic CR44601 - chr2L 15823448 intergenic not near genes chr2L_4_15820001 chr2L_15820001 RAL-890 288 chr2L 15825668 15825690 chr2L 15825746 15825768 6 77 1.5 1.0 1.2 2.7 100 chr2L 15825668 intergenic not near genes chr2L 15825718 intergenic not near genes chr2L 15825768 intergenic not near genes chr2L_6_15825001 chr2L_15825001 RAL-890 289 chr2L 15950383 15950410 chr2L 15950461 15950488 5 78 3.0 1.0 2.0 1.7 105 chr2L 15950383 intron beat-Ib - chr2L 15950436 intron beat-Ib - chr2L 15950488 intron beat-Ib - chr2L_5_15950001 chr2L_15950001 RAL-890 290 chr2L 15956028 15956060 chr2L 15957495 15957527 hobo 17 1467 1.5 4.0 2.8 4.5 1499 chr2L 15956028 intron beat-Ib - chr2L 15956778 intron beat-Ib - chr2L 15957527 intron beat-Ib - chr2L_17_15955001 chr2L_15955001 RAL-890 291 chr2L 16059965 16059974 chr2L 16060063 16060072 5 98 2.0 3.0 2.5 1.4 107 chr2L 16059965 intron beat-Ia + chr2L 16060018 intron beat-Ia + chr2L 16060072 intron beat-Ia + chr2L_5_16060001 chr2L_16060001 RAL-890 292 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 11 145889 15.0 13.5 14.2 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-890 293 chr2L 16115519 16115549 chr2L 16115595 16115625 11 76 0.5 2.5 1.5 4.4 106 chr2L 16115519 intergenic not near genes chr2L 16115572 intergenic not near genes chr2L 16115625 intergenic not near genes chr2L_11_16115001 chr2L_16115001 RAL-890 294 chr2L 16141170 16141195 chr2L 16146377 16146401 copia 8 5207 3.5 4.5 4.0 1.6 5231 chr2L 16141170 intergenic not near genes chr2L 16143786 intergenic not near genes chr2L 16146401 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-890 295 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 5 145889 15.0 13.5 14.2 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-890 296 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405058 13.5 15.0 14.2 0.3 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-890 297 chr2L 16280254 16280276 chr2L 16281425 16281447 1360 10 1171 2.0 1.0 1.5 4.0 1193 chr2L 16280254 intron crp - chr2L 16280850 intron crp - chr2L 16281447 intron crp - chr2L_10_16280001 chr2L_16280001 RAL-890 298 chr2L 16398357 16398385 chr2L 16398439 16398468 7 83 1.5 2.5 2.0 2.3 111 chr2L 16398357 intergenic not near genes chr2L 16398412 intergenic not near genes chr2L 16398468 intergenic not near genes chr2L_7_16395001 chr2L_16395001 RAL-890 299 chr2L 16434106 16434131 chr2L 16434188 16434213 6 82 4.5 1.5 3.0 1.5 107 chr2L 16434106 intron CG5888 - chr2L 16434160 intron CG5888 - chr2L 16434213 intron CG5888 - chr2L_6_16430001 chr2L_16430001 RAL-890 300 chr2L 16511965 16511991 chr2L 16519079 16519105 HMS-Beagle 5 7114 2.5 4.5 3.5 1.1 7140 chr2L 16511965 intron CG5953 - chr2L 16515535 intron CG5953 - chr2L 16519105 intron CG5953 - chr2L_5_16515001 chr2L_16515001 RAL-890 301 chr2L 16531506 16531530 chr2L 16531631 16531655 8 124 3.0 2.5 2.8 2.1 149 chr2L 16531506 intron CG5953 - chr2L 16531580 intron CG5953 - chr2L 16531655 intron CG5953 - chr2L_8_16530001 chr2L_16530001 RAL-890 302 chr2L 16570842 16570856 chr2L 16570918 16570932 4 76 2.5 2.0 2.2 1.2 90 chr2L 16570842 intron CG42389 + chr2L 16570887 intron CG42389 + chr2L 16570932 intron CG42389 + chr2L_4_16570001 chr2L_16570001 RAL-890 303 chr2L 16616583 16616611 chr2L 16616666 16616695 8 81 2.0 4.5 3.2 1.9 112 chr2L 16616583 intron CG42389 + chr2L 16616639 intron CG42389 + chr2L 16616695 intron CG42389 + chr2L_8_16615001 chr2L_16615001 RAL-890 304 chr2L 16721344 16721372 chr2L 16721432 16721458 11 88 2.0 1.5 1.8 3.9 114 chr2L 16721344 intron Cyt-c-p + chr2L 16721401 intron Cyt-c-p + chr2L 16721458 intron Cyt-c-p + chr2L_11_16720001 chr2L_16720001 RAL-890 305 chr2L 16940006 16940015 chr2L 16940073 16940093 4 73 0.0 2.0 1.0 2.0 87 chr2L 16940006 intergenic not near genes chr2L 16940050 intergenic not near genes chr2L 16940093 intergenic not near genes chr2L_4_16940001 chr2L_16940001 RAL-890 306 chr2L 16958103 16958132 chr2L 16962891 16962920 Doc 12 4788 2.5 1.5 2.0 4.0 4817 chr2L 16958103 intergenic not near genes chr2L 16960512 intergenic not near genes chr2L 16962920 intergenic not near genes chr2L_12_16960001 chr2L_16960001 RAL-890 307 chr2L 17032501 17032517 chr2L 17032586 17032602 6 85 3.5 2.0 2.8 1.6 101 chr2L 17032501 intergenic not near genes chr2L 17032552 intergenic not near genes chr2L 17032602 intergenic not near genes chr2L_6_17030001 chr2L_17030001 RAL-890 308 chr2L 17033920 17033936 chr2L 17034006 17034020 10 86 3.0 5.0 4.0 2.0 100 chr2L 17033920 intergenic not near genes chr2L 17033970 intergenic not near genes chr2L 17034020 intergenic not near genes chr2L_10_17030001 chr2L_17030001 RAL-890 309 chr2L 17056743 17056770 chr2L 17056823 17056850 5 77 0.5 2.5 1.5 2.0 107 chr2L 17056743 intergenic not near genes chr2L 17056796 intergenic not near genes chr2L 17056850 intergenic not near genes chr2L_5_17055001 chr2L_17055001 RAL-890 310 chr2L 17070200 17070219 chr2L 17070296 17070315 4 96 1.5 1.0 1.2 1.8 115 chr2L 17070200 intergenic not near genes chr2L 17070258 intergenic not near genes chr2L 17070315 intergenic not near genes chr2L_4_17070001 chr2L_17070001 RAL-890 311 chr2L 17101901 17101915 chr2L 17101977 17101992 6 77 2.0 2.5 2.2 1.9 91 chr2L 17101901 intergenic not near genes chr2L 17101946 intergenic not near genes chr2L 17101992 intergenic not near genes chr2L_6_17100001 chr2L_17100001 RAL-890 312 chr2L 17167565 17167593 chr2L 17167806 17167834 pogo 6 241 3.5 2.5 3.0 1.5 269 chr2L 17167565 intron,intron CG34106 +,beat-IIIa + chr2L 17167700 intron,intron CG34106 +,beat-IIIa + chr2L 17167834 intron,intron CG34106 +,beat-IIIa + chr2L_6_17165001 chr2L_17165001 RAL-890 313 chr2L 17226102 17226127 chr2L 17226181 17226205 5 78 1.5 3.5 2.5 1.4 103 chr2L 17226102 intron beat-IIIc - chr2L 17226154 intron beat-IIIc - chr2L 17226205 intron beat-IIIc - chr2L_5_17225001 chr2L_17225001 RAL-890 314 chr2L 17264747 17264773 chr2L 17264826 17264852 8 80 1.0 2.5 1.8 2.9 105 chr2L 17264747 intergenic not near genes chr2L 17264800 intergenic not near genes chr2L 17264852 intergenic not near genes chr2L_8_17260001 chr2L_17260001 RAL-890 315 chr2L 17327911 17327929 chr2L 17327996 17328014 9 85 6.0 3.5 4.8 1.6 103 chr2L 17327911 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328014 intergenic not near genes chr2L_9_17325001 chr2L_17325001 RAL-890 316 chr2L 17335518 17335527 chr2L 17336712 17336722 1360 6 1195 3.5 1.5 2.5 1.7 1204 chr2L 17335518 intergenic not near genes chr2L 17336120 intergenic not near genes chr2L 17336722 intergenic not near genes chr2L_6_17335001 chr2L_17335001 RAL-890 317 chr2L 17380450 17380481 chr2L 17380720 17380751 9 270 1.5 3.5 2.5 2.6 301 chr2L 17380450 intron Lrch - chr2L 17380600 intron Lrch - chr2L 17380751 intron Lrch - chr2L_9_17380001 chr2L_17380001 RAL-890 318 chr2L 17424264 17424290 chr2L 17424422 17424448 8 158 2.5 1.0 1.8 2.9 184 chr2L 17424264 intron Dif - chr2L 17424356 intron Dif - chr2L 17424448 intron Dif - chr2L_8_17420001 chr2L_17420001 RAL-890 319 chr2L 17474677 17474704 chr2L 17474763 17474790 5 86 1.0 1.0 1.0 2.5 113 chr2L 17474677 3` UTR Sgt + chr2L 17474734 3` UTR Sgt + chr2L 17474790 intergenic Sgt +,Aac11 - chr2L_5_17470001 chr2L_17470001 RAL-890 320 chr2L 17490844 17491091 chr2L 17491058 17491173 7 119 0.0 0.0 0.0 7.0 329 chr2L 17490844 intron qua - chr2L 17491008 intron qua - chr2L 17491173 intron qua - chr2L_7_17490001 chr2L_17490001 RAL-890 321 chr2L 17517867 17517871 chr2L 17517950 17517954 4 83 1.0 4.0 2.5 1.1 87 chr2L 17517867 intron Dhc36C + chr2L 17517910 intron Dhc36C + chr2L 17517954 intron Dhc36C + chr2L_4_17515001 chr2L_17515001 RAL-890 322 chr2L 17637152 17637173 chr2L 17637230 17637251 7 78 1.0 4.0 2.5 2.0 99 chr2L 17637152 intergenic not near genes chr2L 17637202 intergenic not near genes chr2L 17637251 intergenic not near genes chr2L_7_17635001 chr2L_17635001 RAL-890 323 chr2L 17731251 17731275 chr2L 17731333 17731363 10 87 0.5 2.5 1.5 4.0 112 chr2L 17731251 intron CadN - chr2L 17731307 intron CadN - chr2L 17731363 intron CadN - chr2L_10_17730001 chr2L_17730001 RAL-890 324 chr2L 17819930 17819943 chr2L 17825132 17825145 copia 6 5202 6.0 3.0 4.5 1.1 5215 chr2L 17819930 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825145 intron CadN2 - chr2L_6_17820001 chr2L_17820001 RAL-890 325 chr2L 17872329 17872359 chr2L 17872543 17872566 8 213 1.5 1.0 1.2 3.6 237 chr2L 17872329 intron CadN2 - chr2L 17872448 intron CadN2 - chr2L 17872566 intron CadN2 - chr2L_8_17870001 chr2L_17870001 RAL-890 326 chr2L 17911973 17911977 chr2L 17914147 17914155 pogo 4 2177 5.0 5.5 5.2 0.6 2182 chr2L 17911973 intergenic not near genes chr2L 17913064 intergenic not near genes chr2L 17914155 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-890 327 chr2L 17951945 17951978 chr2L 17953412 17953445 hobo 10 1466 3.5 3.0 3.2 2.4 1500 chr2L 17951945 intergenic CR44398 -,CR44397 - chr2L 17952695 intergenic not near genes chr2L 17953445 intergenic not near genes chr2L_10_17950001 chr2L_17950001 RAL-890 328 chr2L 18020747 18020770 chr2L 18020833 18020857 6 86 2.5 4.0 3.2 1.4 110 chr2L 18020747 intron rdo + chr2L 18020802 intron rdo + chr2L 18020857 intron rdo + chr2L_6_18020001 chr2L_18020001 RAL-890 329 chr2L 18026980 18027016 chr2L 18027320 18027356 12 340 4.5 5.0 4.8 2.1 376 chr2L 18026980 5` UTR rdo + chr2L 18027168 intron rdo + chr2L 18027356 intron rdo + chr2L_12_18025001 chr2L_18025001 RAL-890 330 chr2L 18051891 18051903 chr2L 18061038 18061049 roo 4 9147 3.0 3.5 3.2 1.0 9158 chr2L 18051891 intron rdo + chr2L 18056470 intron rdo + chr2L 18061049 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-890 331 chr2L 18111247 18111264 chr2L 18111338 18111355 7 91 3.5 7.0 5.2 1.1 108 chr2L 18111247 intergenic not near genes chr2L 18111301 intergenic not near genes chr2L 18111355 intergenic not near genes chr2L_7_18110001 chr2L_18110001 RAL-890 332 chr2L 18283107 18283135 chr2L 18283183 18283210 12 76 2.0 3.5 2.8 3.2 103 chr2L 18283107 intergenic not near genes chr2L 18283158 intergenic not near genes chr2L 18283210 intergenic not near genes chr2L_12_18280001 chr2L_18280001 RAL-890 333 chr2L 18408024 18408055 chr2L 18412808 18412839 Doc 13 4784 3.5 4.5 4.0 2.6 4815 chr2L 18408024 intergenic not near genes chr2L 18410432 intergenic not near genes chr2L 18412839 intergenic not near genes chr2L_13_18410001 chr2L_18410001 RAL-890 334 chr2L 18519404 18519438 chr2L 18523157 18523196 6 3756 22.5 21.5 22.0 0.3 3792 chr2L 18519404 intron CG10211 + chr2L 18521300 intron CG10211 + chr2L 18523196 intron CG10211 + chr2L_6_18520001 chr2L_18520001 RAL-890 335 chr2L 18790284 18790316 chr2L 18791104 18791136 9 821 15.0 25.5 20.2 0.4 852 chr2L 18790284 intron ham - chr2L 18790710 intron ham - chr2L 18791136 intron ham - chr2L_9_18790001 chr2L_18790001 RAL-890 336 chr2L 18811408 18811438 chr2L 18811490 18811520 4 82 3.0 0.0 1.5 1.6 112 chr2L 18811408 intergenic CG10570 -,CG42502 - chr2L 18811464 intergenic CG10570 -,CG42502 - chr2L 18811520 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-890 337 chr2L 18812531 18812550 chr2L 18812838 18812863 8 312 1.0 1.5 1.2 3.6 332 chr2L 18812531 intergenic CG17325 +,CG42305 + chr2L 18812697 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812863 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_8_18810001 chr2L_18810001 RAL-890 338 chr2L 18876863 18876881 chr2L 18876941 18876959 6 78 4.0 4.5 4.2 1.2 96 chr2L 18876863 intron tup - chr2L 18876911 intron tup - chr2L 18876959 intron tup - chr2L_6_18875001 chr2L_18875001 RAL-890 339 chr2L 18902631 18902657 chr2L 18902912 18902938 11 281 2.0 2.5 2.2 3.4 307 chr2L 18902631 intergenic not near genes chr2L 18902784 intergenic not near genes chr2L 18902938 intergenic not near genes chr2L_11_18900001 chr2L_18900001 RAL-890 340 chr2L 18990311 18990338 chr2L 18990422 18990449 6 108 6.0 3.5 4.8 1.0 138 chr2L 18990311 intergenic CG15170 - chr2L 18990380 intergenic CG15170 - chr2L 18990449 intergenic CG15170 - chr2L_6_18990001 chr2L_18990001 RAL-890 341 chr2L 19142483 19142513 chr2L 19142573 19142603 8 89 4.0 3.5 3.8 1.7 120 chr2L 19142483 intron brat + chr2L 19142543 intron brat + chr2L 19142603 intron brat + chr2L_8_19140001 chr2L_19140001 RAL-890 342 chr2L 19147385 19147391 chr2L 19154417 19154425 297 4 7034 0.0 4.0 2.0 1.3 7040 chr2L 19147385 intron brat + chr2L 19150905 intron brat + chr2L 19154425 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-890 343 chr2L 19189969 19190005 chr2L 19190123 19190156 7 153 2.0 2.0 2.0 2.3 187 chr2L 19189969 intergenic pigeon +,drl + chr2L 19190062 intergenic pigeon +,drl + chr2L 19190156 intergenic drl +,pigeon + chr2L_7_19190001 chr2L_19190001 RAL-890 344 chr2L 19199678 19199702 chr2L 19199755 19199778 8 76 2.5 1.5 2.0 2.7 100 chr2L 19199678 intron drl + chr2L 19199728 intron drl + chr2L 19199778 intron drl + chr2L_8_19195001 chr2L_19195001 RAL-890 345 chr2L 19209621 19209649 chr2L 19209705 19209734 14 85 1.5 1.5 1.5 5.6 113 chr2L 19209621 intergenic not near genes chr2L 19209678 intergenic not near genes chr2L 19209734 intergenic not near genes chr2L_14_19205001 chr2L_19205001 RAL-890 346 chr2L 19345014 19345050 chr2L 19357223 19357259 blood 7 12209 3.0 3.0 3.0 1.8 12245 chr2L 19345014 intron dnt - chr2L 19351136 intron dnt - chr2L 19357259 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-890 347 chr2L 19357550 19357564 chr2L 19357640 19357654 7 90 3.5 3.0 3.2 1.7 104 chr2L 19357550 intron dnt - chr2L 19357602 intron dnt - chr2L 19357654 intron dnt - chr2L_7_19355001 chr2L_19355001 RAL-890 348 chr2L 19374492 19374520 chr2L 19374600 19374629 11 107 1.0 2.5 1.8 3.9 137 chr2L 19374492 intergenic not near genes chr2L 19374560 intergenic not near genes chr2L 19374629 intergenic not near genes chr2L_11_19370001 chr2L_19370001 RAL-890 349 chr2L 19378350 19378370 chr2L 19378420 19378429 9 75 0.5 0.5 0.5 6.0 79 chr2L 19378350 intergenic not near genes chr2L 19378390 intergenic not near genes chr2L 19378429 intergenic not near genes chr2L_9_19375001 chr2L_19375001 RAL-890 350 chr2L 19407717 19407739 chr2L 19407914 19407936 8 197 6.5 4.5 5.5 1.2 219 chr2L 19407717 intron Pax - chr2L 19407826 intron Pax - chr2L 19407936 intron Pax - chr2L_8_19405001 chr2L_19405001 RAL-890 351 chr2L 19422083 19422088 chr2L 19422173 19422177 5 89 10.0 0.0 5.0 0.8 94 chr2L 19422083 intron Pax - chr2L 19422130 intron Pax - chr2L 19422177 intron Pax - chr2L_5_19420001 chr2L_19420001 RAL-890 352 chr2L 19438510 19438519 chr2L 19438595 19438604 4 85 9.0 8.0 8.5 0.4 94 chr2L 19438510 intron CG10237 - chr2L 19438557 intron CG10237 - chr2L 19438604 intron CG10237 - chr2L_4_19435001 chr2L_19435001 RAL-890 353 chr2L 19562543 19562553 chr2L 19562623 19562627 6 79 0.0 6.5 3.2 1.4 84 chr2L 19562543 intron Tep5 + chr2L 19562585 intron Tep5 + chr2L 19562627 intron Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-890 354 chr2L 19597290 19597306 chr2L 19597517 19597538 8 230 1.5 3.0 2.2 2.5 248 chr2L 19597290 intron Lar + chr2L 19597414 intron Lar + chr2L 19597538 intron Lar + chr2L_8_19595001 chr2L_19595001 RAL-890 355 chr2L 19620092 19620125 chr2L 19621081 19621113 jockey 6 989 4.0 2.0 3.0 1.5 1021 chr2L 19620092 intron Lar + chr2L 19620602 intron Lar + chr2L 19621113 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-890 356 chr2L 19638542 19638564 chr2L 19638628 19638652 12 87 3.5 2.0 2.8 3.2 110 chr2L 19638542 intron Lar + chr2L 19638597 intron Lar + chr2L 19638652 intron Lar + chr2L_12_19635001 chr2L_19635001 RAL-890 357 chr2L 19652569 19652598 chr2L 19674005 19674034 opus 8 21435 4.0 3.0 3.5 1.8 21465 chr2L 19652569 intron Lar + chr2L 19663302 intron Lar + chr2L 19674034 intron Lar + chr2L_8_19660001 chr2L_19660001 RAL-890 358 chr2L 19703536 19703569 chr2L 19712672 19712705 roo 10 9134 2.0 3.5 2.8 2.6 9169 chr2L 19703536 intron Lar + chr2L 19708120 intron Lar + chr2L 19712705 intron Lar + chr2L_10_19705001 chr2L_19705001 RAL-890 359 chr2L 19737367 19737389 chr2L 19740823 19740857 1360 8 3460 2.0 1.0 1.5 3.2 3490 chr2L 19737367 intergenic Nf-YB + chr2L 19739112 intergenic not near genes chr2L 19740857 intergenic not near genes chr2L_8_19735001 chr2L_19735001 RAL-890 360 chr2L 19762816 19762832 chr2L 19763056 19763071 pogo 6 241 2.0 4.0 3.0 1.5 255 chr2L 19762816 intron fbp - chr2L 19762944 intron fbp - chr2L 19763071 intron fbp - chr2L_6_19760001 chr2L_19760001 RAL-890 361 chr2L 19773161 19773191 chr2L 19773248 19773278 8 87 1.5 1.0 1.2 3.6 117 chr2L 19773161 intergenic not near genes chr2L 19773220 intergenic not near genes chr2L 19773278 intergenic not near genes chr2L_8_19770001 chr2L_19770001 RAL-890 362 chr2L 19824416 19824426 chr2L 19824499 19824508 4 83 3.0 4.0 3.5 0.9 92 chr2L 19824416 intron sick + chr2L 19824462 intron sick + chr2L 19824508 intron sick + chr2L_4_19820001 chr2L_19820001 RAL-890 363 chr2L 19837277 19837307 chr2L 19837357 19837387 14 80 5.5 2.5 4.0 2.8 110 chr2L 19837277 intron sick + chr2L 19837332 intron sick + chr2L 19837387 intron sick + chr2L_14_19835001 chr2L_19835001 RAL-890 364 chr2L 19878993 19879018 chr2L 19879202 19879227 13 209 3.0 3.5 3.2 3.1 234 chr2L 19878993 intron sick + chr2L 19879110 intron sick + chr2L 19879227 intron sick + chr2L_13_19875001 chr2L_19875001 RAL-890 365 chr2L 19988121 19988148 chr2L 19988211 19988238 9 90 1.5 2.0 1.8 3.2 117 chr2L 19988121 intron CG43861 - chr2L 19988180 intron CG43861 - chr2L 19988238 intron CG43861 - chr2L_9_19985001 chr2L_19985001 RAL-890 366 chr2L 20005881 20005904 chr2L 20010957 20010980 flea 11 5076 3.5 4.5 4.0 2.2 5099 chr2L 20005881 intron CG43861 - chr2L 20008430 intron CG43861 - chr2L 20010980 intron CG43861 - chr2L_11_20005001 chr2L_20005001 RAL-890 367 chr2L 20034563 20034590 chr2L 20035873 20035900 8 1310 23.0 8.0 15.5 0.5 1337 chr2L 20034563 intron sNPF + chr2L 20035232 intron sNPF + chr2L 20035900 intron sNPF + chr2L_8_20035001 chr2L_20035001 RAL-890 368 chr2L 20056647 20056655 chr2L 20056712 20056739 5 78 1.5 3.0 2.2 1.6 92 chr2L 20056647 intergenic sNPF + chr2L 20056693 intergenic sNPF + chr2L 20056739 intergenic sNPF + chr2L_5_20055001 chr2L_20055001 RAL-890 369 chr2L 20057049 20057074 chr2L 20057127 20057152 10 77 2.5 1.0 1.8 3.6 103 chr2L 20057049 intergenic not near genes chr2L 20057100 intergenic not near genes chr2L 20057152 intergenic not near genes chr2L_10_20055001 chr2L_20055001 RAL-890 370 chr2L 20078881 20078909 chr2L 20078958 20078986 8 76 5.0 3.0 4.0 1.6 105 chr2L 20078881 intron neb + chr2L 20078934 intron neb + chr2L 20078986 intron neb + chr2L_8_20075001 chr2L_20075001 RAL-890 371 chr2L 20079881 20079907 chr2L 20080004 20080030 6 123 2.5 1.0 1.8 2.1 149 chr2L 20079881 intron,intron neb +,fok - chr2L 20079956 intron,intron neb +,fok - chr2L 20080030 intron,intron neb +,fok - chr2L_6_20075001 chr2L_20075001 RAL-890 372 chr2L 20083851 20083859 chr2L 20083927 20083935 4 75 8.0 3.5 5.8 0.6 84 chr2L 20083851 intron,intron neb +,fok - chr2L 20083893 intron,intron neb +,fok - chr2L 20083935 intron,intron neb +,fok - chr2L_4_20080001 chr2L_20080001 RAL-890 373 chr2L 20272117 20272143 chr2L 20282827 20282854 copia 10 10710 4.0 8.0 6.0 1.4 10737 chr2L 20272117 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282854 intergenic not near genes chr2L_10_20275001 chr2L_20275001 RAL-890 374 chr2L 20296518 20296539 chr2L 20296599 20296620 10 81 2.0 2.0 2.0 3.3 102 chr2L 20296518 intergenic CR43414 - chr2L 20296569 intergenic CR43414 - chr2L 20296620 intergenic CR43414 - chr2L_10_20295001 chr2L_20295001 RAL-890 375 chr2L 20303160 20303193 chr2L 20310628 20310661 blood 5 7468 0.0 2.5 1.2 2.3 7501 chr2L 20303160 intergenic not near genes chr2L 20306910 intergenic not near genes chr2L 20310661 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-890 376 chr2L 20372228 20372245 chr2L 20372469 20372486 pogo 9 241 1.5 5.5 3.5 2.0 258 chr2L 20372228 intergenic Ugt37a1 - chr2L 20372357 intergenic Ugt37a1 - chr2L 20372486 exon Ugt37a1 - chr2L_9_20370001 chr2L_20370001 RAL-890 377 chr2L 20389122 20389128 chr2L 20389501 20389506 4 378 4.0 4.0 4.0 0.8 384 chr2L 20389122 intron CG10947 - chr2L 20389314 intron CG10947 - chr2L 20389506 intron CG10947 - chr2L_4_20385001 chr2L_20385001 RAL-890 378 chr2L 20396806 20396827 chr2L 20396882 20396902 7 76 3.0 0.5 1.8 2.5 96 chr2L 20396806 intron CG10947 - chr2L 20396854 intron CG10947 - chr2L 20396902 intron CG10947 - chr2L_7_20395001 chr2L_20395001 RAL-890 379 chr2L 20400373 20400393 chr2L 20400492 20400512 7 119 1.5 4.0 2.8 1.8 139 chr2L 20400373 intron CG10947 - chr2L 20400442 intron CG10947 - chr2L 20400512 intron CG10947 - chr2L_7_20400001 chr2L_20400001 RAL-890 380 chr2L 20498692 20498705 chr2L 20498791 20498804 6 99 6.0 6.0 6.0 0.9 112 chr2L 20498692 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498804 intergenic not near genes chr2L_6_20495001 chr2L_20495001 RAL-890 381 chr2L 20568667 20568676 chr2L 20569055 20569066 X-element 5 390 7.0 2.5 4.8 0.9 399 chr2L 20568667 intron CR45347 + chr2L 20568866 intron CR45347 + chr2L 20569066 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-890 382 chr2L 20576217 20576248 chr2L 20583685 20583716 blood 13 7467 4.0 2.5 3.2 3.1 7499 chr2L 20576217 intergenic CR45347 + chr2L 20579966 intergenic not near genes chr2L 20583716 3` UTR CR44909 - chr2L_13_20575001 chr2L_20575001 RAL-890 383 chr2L 20648179 20648185 chr2L 20648358 20648363 5 178 55.5 4.5 30.0 0.2 184 chr2L 20648179 intron Uhg3 + chr2L 20648271 5` UTR Uhg3 + chr2L 20648363 5` UTR Uhg3 + chr2L_5_20645001 chr2L_20645001 RAL-890 384 chr2L 20804706 20804732 chr2L 20804791 20804817 6 85 3.0 2.0 2.5 1.7 111 chr2L 20804706 intron CG9328 + chr2L 20804762 intron CG9328 + chr2L 20804817 intron CG9328 + chr2L_6_20800001 chr2L_20800001 RAL-890 385 chr2L 20835810 20835838 chr2L 20836525 20836555 Quasimodo 8 717 1.5 3.5 2.5 2.3 745 chr2L 20835810 5` UTR Oseg5 - chr2L 20836182 intergenic Oseg5 -,Spn38F - chr2L 20836555 intergenic Spn38F - chr2L_8_20835001 chr2L_20835001 RAL-890 386 chr2L 20891537 20891546 chr2L 20896638 20896647 jockey 6 5101 1.5 6.5 4.0 1.2 5110 chr2L 20891537 intron,intron CG43739 -,sky - chr2L 20894092 intron,intron CG43739 -,sky - chr2L 20896647 intron,intron CG43739 -,sky - chr2L_6_20890001 chr2L_20890001 RAL-890 387 chr2L 20967929 20967957 chr2L 20968022 20968050 9 92 6.0 4.0 5.0 1.5 121 chr2L 20967929 intron CG42238 - chr2L 20967990 intron CG42238 - chr2L 20968050 intron CG42238 - chr2L_9_20965001 chr2L_20965001 RAL-890 388 chr2L 20976642 20976681 chr2L 20981455 20981495 X-element 6 4814 2.5 2.0 2.2 1.9 4853 chr2L 20976642 intron CG42238 - chr2L 20979068 intron CG42238 - chr2L 20981495 intron CG42238 - chr2L_6_20975001 chr2L_20975001 RAL-890 389 chr2L 20984604 20984639 chr2L 20984685 20984720 12 81 1.0 0.0 0.5 8.0 116 chr2L 20984604 intron CG42238 - chr2L 20984662 intron CG42238 - chr2L 20984720 intron CG42238 - chr2L_12_20980001 chr2L_20980001 RAL-890 390 chr2L 21020277 21020310 chr2L 21023954 21023986 NOF 9 3677 1.0 2.0 1.5 3.6 3709 chr2L 21020277 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-890 391 chr2L 21041135 21041166 chr2L 21049396 21049427 Tirant 9 8260 4.0 2.5 3.2 2.1 8292 chr2L 21041135 intron CG42238 - chr2L 21045281 intron CG42238 - chr2L 21049427 intron CG42238 - chr2L_9_21045001 chr2L_21045001 RAL-890 392 chr2L 21119282 21119317 chr2L 21119365 21119401 9 84 2.5 4.0 3.2 2.1 119 chr2L 21119282 intron Nhe2 + chr2L 21119342 intron Nhe2 + chr2L 21119401 intron Nhe2 + chr2L_9_21115001 chr2L_21115001 RAL-890 393 chr2L 21196178 21196195 chr2L 21196304 21196320 7 126 3.5 3.0 3.2 1.7 142 chr2L 21196178 intron Ret - chr2L 21196249 intron Ret - chr2L 21196320 intron Ret - chr2L_7_21195001 chr2L_21195001 RAL-890 394 chr2L 21284055 21284084 chr2L 21284528 21284557 8 472 2.5 3.0 2.8 2.1 502 chr2L 21284055 intergenic not near genes chr2L 21284306 intergenic not near genes chr2L 21284557 intergenic not near genes chr2L_8_21280001 chr2L_21280001 RAL-890 395 chr2L 21285633 21285669 chr2L 21285729 21285767 17 98 3.5 5.0 4.2 3.3 134 chr2L 21285633 intergenic Mio - chr2L 21285700 intergenic Mio - chr2L 21285767 intergenic Mio - chr2L_17_21285001 chr2L_21285001 RAL-890 396 chr2L 21286612 21286626 chr2L 21286689 21286704 4 78 3.0 3.0 3.0 1.0 92 chr2L 21286612 exon Mio - chr2L 21286658 intron Mio - chr2L 21286704 intron Mio - chr2L_4_21285001 chr2L_21285001 RAL-890 397 chr2L 21307472 21307494 chr2L 21307553 21307576 10 82 2.5 1.5 2.0 3.3 104 chr2L 21307472 intron Mio - chr2L 21307524 intron Mio - chr2L 21307576 intron Mio - chr2L_10_21305001 chr2L_21305001 RAL-890 398 chr2L 21347551 21347583 chr2L 21355023 21355055 blood 11 7472 1.5 0.5 1.0 5.5 7504 chr2L 21347551 intron Tsp39D + chr2L 21351303 intron Tsp39D + chr2L 21355055 intron Tsp39D + chr2L_11_21350001 chr2L_21350001 RAL-890 399 chr2L 21396599 21396615 chr2L 21396834 21396850 6 235 3.5 4.5 4.0 1.2 251 chr2L 21396599 intergenic not near genes chr2L 21396724 intergenic not near genes chr2L 21396850 intergenic not near genes chr2L_6_21395001 chr2L_21395001 RAL-890 400 chr2L 21597029 21597060 chr2L 21604773 21604804 roo 11 7740 3.5 3.5 3.5 2.4 7775 chr2L 21597029 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604804 intergenic not near genes chr2L_11_21600001 chr2L_21600001 RAL-890 401 chr2L 21755492 21755523 chr2L 21755616 21755647 13 124 5.0 4.5 4.8 2.2 155 chr2L 21755492 intron step - chr2L 21755570 intron step - chr2L 21755647 intron step - chr2L_13_21755001 chr2L_21755001 RAL-890 402 chr2L 21836404 21836420 chr2L 21836479 21836510 4 86 1.5 0.0 0.8 2.2 106 chr2L 21836404 3` UTR tsh + chr2L 21836457 3` UTR tsh + chr2L 21836510 3` UTR tsh + chr2L_4_21835001 chr2L_21835001 RAL-890 403 chr2L 21855478 21855513 chr2L 21855564 21855600 10 86 2.5 2.5 2.5 2.9 122 chr2L 21855478 intron CR44917 + chr2L 21855539 intron CR44917 + chr2L 21855600 intron CR44917 + chr2L_10_21855001 chr2L_21855001 RAL-890 404 chr2L 21859317 21859346 chr2L 21859397 21859416 9 77 3.5 1.5 2.5 2.6 99 chr2L 21859317 intron CR44917 + chr2L 21859366 intron CR44917 + chr2L 21859416 intron CR44917 + chr2L_9_21855001 chr2L_21855001 RAL-890 405 chr2L 21876389 21876423 chr2L 21876464 21876499 8 75 1.5 2.0 1.8 2.9 110 chr2L 21876389 intergenic not near genes chr2L 21876444 intergenic not near genes chr2L 21876499 intergenic not near genes chr2L_8_21875001 chr2L_21875001 RAL-890 406 chr2L 21886610 21886624 chr2L 21886690 21886703 5 78 4.0 1.0 2.5 1.4 93 chr2L 21886610 intergenic not near genes chr2L 21886656 intergenic not near genes chr2L 21886703 intergenic not near genes chr2L_5_21885001 chr2L_21885001 RAL-890 407 chr2L 21981682 21981714 chr2L 21990845 21990879 roo 9 9163 2.0 4.5 3.2 2.1 9197 chr2L 21981682 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_9_21985001 chr2L_21985001 RAL-890 408 chr2L 22037378 22037402 chr2L 22037680 22037704 INE-1 5 302 4.5 2.0 3.2 1.2 326 chr2L 22037378 intergenic CG41434 + chr2L 22037541 intergenic CG41434 + chr2L 22037704 intergenic CG41434 + chr2L_5_22035001 chr2L_22035001 RAL-890 409 chr2L 22077287 22077318 chr2L 22077368 22077399 14 81 1.5 4.0 2.8 3.7 112 chr2L 22077287 intergenic not near genes chr2L 22077343 intergenic not near genes chr2L 22077399 intergenic not near genes chr2L_14_22075001 chr2L_22075001 RAL-890 410 chr2L 22212138 22212156 chr2L 22212685 22212703 4 547 1.5 3.5 2.5 1.1 565 chr2L 22212138 intron Ir40a - chr2L 22212420 intron Ir40a - chr2L 22212703 intron Ir40a - chr2L_4_22210001 chr2L_22210001 RAL-890 411 chr2L 22215905 22215937 chr2L 22215991 22216023 10 86 3.0 2.5 2.8 2.6 118 chr2L 22215905 intergenic not near genes chr2L 22215964 intergenic not near genes chr2L 22216023 intergenic not near genes chr2L_10_22215001 chr2L_22215001 RAL-890 412 chr2L 22239427 22239461 chr2L 22239508 22239542 11 80 2.0 6.0 4.0 2.2 115 chr2L 22239427 3` UTR CR43765 - chr2L 22239484 3` UTR CR43765 - chr2L 22239542 3` UTR CR43765 - chr2L_11_22235001 chr2L_22235001 RAL-890 413 chr2L 22258617 22258648 chr2L 22260741 22260772 G6 15 2123 5.5 2.5 4.0 3.0 2155 chr2L 22258617 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260772 intergenic not near genes chr2L_15_22255001 chr2L_22255001 RAL-890 414 chr2L 22294355 22294377 chr2L 22294443 22294465 6 88 1.5 1.5 1.5 2.4 110 chr2L 22294355 intergenic not near genes chr2L 22294410 intergenic not near genes chr2L 22294465 intergenic not near genes chr2L_6_22290001 chr2L_22290001 RAL-890 415 chr2L 22546487 22546516 chr2L 22546563 22546592 8 76 2.0 5.0 3.5 1.8 105 chr2L 22546487 intron CG17490 + chr2L 22546540 intron CG17490 + chr2L 22546592 intron CG17490 + chr2L_8_22545001 chr2L_22545001 RAL-890 416 chr2L 22548925 22548943 chr2L 22550150 22550168 1360 7 1225 0.5 6.0 3.2 1.7 1243 chr2L 22548925 intergenic CG17490 + chr2L 22549546 intergenic not near genes chr2L 22550168 intergenic CG17493 + chr2L_7_22545001 chr2L_22545001 RAL-890 417 chr2L 22581970 22582001 chr2L 22583759 22583790 S-element 7 1789 2.5 1.5 2.0 2.3 1820 chr2L 22581970 intron CG17494 + chr2L 22582880 intron CG17494 + chr2L 22583790 intron CG17494 + chr2L_7_22580001 chr2L_22580001 RAL-890 418 chr2L 22706807 22706837 chr2L 22706909 22706939 11 102 2.5 1.5 2.0 3.7 132 chr2L 22706807 intron CG40006 - chr2L 22706873 intron CG40006 - chr2L 22706939 intron CG40006 - chr2L_11_22705001 chr2L_22705001 RAL-890 419 chr2L 23181412 23181429 chr2L 23181510 23181514 5 102 4.0 0.5 2.2 1.6 102 chr2L 23181412 intergenic not near genes chr2L 23181463 intergenic not near genes chr2L 23181514 intergenic not near genes chr2L_5_23180001 chr2L_23180001 RAL-890 420 chr2R 529327 529356 chr2R 537952 537981 Max-element 9 8618 0.5 4.0 2.2 2.8 8654 chr2R 529327 intron CG40378 + chr2R 533654 intron CG40378 + chr2R 537981 intron CG40378 + chr2R_9_530001 chr2R_530001 RAL-890 421 chr2R 910724 910748 chr2R 912250 912277 10 1528 2.5 7.0 4.8 1.7 1553 chr2R 910724 intergenic not near genes chr2R 911500 intergenic not near genes chr2R 912277 intergenic not near genes chr2R_10_910001 chr2R_910001 RAL-890 422 chr2R 1082370 1082385 chr2R 1087127 1087160 Doc 7 4762 3.5 2.0 2.8 1.8 4790 chr2R 1082370 intron rl + chr2R 1084765 intron rl + chr2R 1087160 intron rl + chr2R_7_1080001 chr2R_1080001 RAL-890 423 chr2R 1340063 1340083 chr2R 1340153 1340172 4 87 16.0 14.5 15.2 0.2 109 chr2R 1340063 intergenic not near genes chr2R 1340118 intergenic not near genes chr2R 1340172 intergenic not near genes chr2R_4_1340001 chr2R_1340001 RAL-890 424 chr2R 2499001 2499016 chr2R 2508147 2508163 roo 6 9146 3.0 6.5 4.8 1.0 9162 chr2R 2499001 intron MFS17 - chr2R 2503582 intron MFS17 - chr2R 2508163 intron MFS17 - chr2R_6_2500001 chr2R_2500001 RAL-890 425 chr2R 3291934 3292101 chr2R 3915103 3915262 4 623165 9.0 21.0 15.0 0.2 623328 chr2R 3291934 intergenic not near genes chr2R 3603598 intergenic not near genes chr2R 3915262 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-890 426 chr2R 4265304 4265312 chr2R 4265387 4265395 5 83 16.0 13.0 14.5 0.3 91 chr2R 4265304 intergenic not near genes chr2R 4265350 intergenic not near genes chr2R 4265395 intergenic not near genes chr2R_5_4265001 chr2R_4265001 RAL-890 427 chr2R 4502646 4502676 chr2R 4502876 4502884 14 227 3.0 1.0 2.0 4.7 238 chr2R 4502646 intergenic not near genes chr2R 4502765 intergenic not near genes chr2R 4502884 intergenic not near genes chr2R_14_4500001 chr2R_4500001 RAL-890 428 chr2R 4688109 4688128 chr2R 4688202 4688221 6 92 2.0 2.5 2.2 1.9 112 chr2R 4688109 intergenic not near genes chr2R 4688165 intergenic not near genes chr2R 4688221 intergenic not near genes chr2R_6_4685001 chr2R_4685001 RAL-890 429 chr2R 4750339 4750376 chr2R 4751496 4751533 1360 7 1157 2.5 1.5 2.0 2.3 1194 chr2R 4750339 intron conu + chr2R 4750936 intron conu + chr2R 4751533 intron conu + chr2R_7_4750001 chr2R_4750001 RAL-890 430 chr2R 4754106 4754139 chr2R 4754261 4754294 13 155 1.0 4.0 2.5 3.7 188 chr2R 4754106 intron conu + chr2R 4754200 intron conu + chr2R 4754294 intron conu + chr2R_13_4750001 chr2R_4750001 RAL-890 431 chr2R 4783251 4783270 chr2R 4783385 4783404 4 129 1.5 6.0 3.8 0.8 153 chr2R 4783251 intergenic not near genes chr2R 4783328 intergenic not near genes chr2R 4783404 intergenic not near genes chr2R_4_4780001 chr2R_4780001 RAL-890 432 chr2R 4821217 4821243 chr2R 4821303 4821329 6 86 1.5 2.5 2.0 2.0 112 chr2R 4821217 intron CG17528 - chr2R 4821273 intron CG17528 - chr2R 4821329 intron CG17528 - chr2R_6_4820001 chr2R_4820001 RAL-890 433 chr2R 4838876 4838889 chr2R 4840399 4840412 transib2 9 1523 7.5 6.5 7.0 1.1 1536 chr2R 4838876 intergenic not near genes chr2R 4839644 intergenic not near genes chr2R 4840412 intergenic not near genes chr2R_9_4835001 chr2R_4835001 RAL-890 434 chr2R 4940962 4940980 chr2R 4943412 4943430 4 2450 16.0 14.0 15.0 0.2 2468 chr2R 4940962 intron Ir41a + chr2R 4942196 intron Ir41a + chr2R 4943430 intron Ir41a + chr2R_4_4940001 chr2R_4940001 RAL-890 435 chr2R 4957028 4957046 chr2R 4957119 4957149 8 101 2.5 1.5 2.0 2.7 121 chr2R 4957028 intron Ir41a + chr2R 4957088 intron Ir41a + chr2R 4957149 intron Ir41a + chr2R_8_4955001 chr2R_4955001 RAL-890 436 chr2R 5040751 5040760 chr2R 5041240 5041250 4 489 0.0 2.0 1.0 2.0 499 chr2R 5040751 intergenic not near genes chr2R 5041000 intergenic not near genes chr2R 5041250 intergenic not near genes chr2R_4_5040001 chr2R_5040001 RAL-890 437 chr2R 5075223 5075247 chr2R 5075351 5075357 9 125 4.0 0.0 2.0 3.0 134 chr2R 5075223 intergenic not near genes chr2R 5075290 intergenic not near genes chr2R 5075357 intergenic not near genes chr2R_9_5075001 chr2R_5075001 RAL-890 438 chr2R 5075350 5075374 chr2R 5075766 5075790 10 416 0.0 4.5 2.2 3.1 440 chr2R 5075350 intergenic not near genes chr2R 5075570 intergenic not near genes chr2R 5075790 intergenic not near genes chr2R_10_5075001 chr2R_5075001 RAL-890 439 chr2R 5125250 5125258 chr2R 5125568 5125573 5 317 3.0 2.0 2.5 1.4 323 chr2R 5125250 intron gus - chr2R 5125412 intron gus - chr2R 5125573 intron gus - chr2R_5_5125001 chr2R_5125001 RAL-890 440 chr2R 5125260 5125276 chr2R 5125565 5125594 12 316 1.5 1.5 1.5 4.8 334 chr2R 5125260 intron gus - chr2R 5125427 intron gus - chr2R 5125594 intron gus - chr2R_12_5125001 chr2R_5125001 RAL-890 441 chr2R 5209782 5209806 chr2R 5210314 5210339 7 532 6.5 3.5 5.0 1.2 557 chr2R 5209782 intron Nipped-A - chr2R 5210060 intron Nipped-A - chr2R 5210339 intron Nipped-A - chr2R_7_5210001 chr2R_5210001 RAL-890 442 chr2R 5237349 5237373 chr2R 5237431 5237455 8 82 2.0 0.0 1.0 4.0 106 chr2R 5237349 intron Nipped-A - chr2R 5237402 intron Nipped-A - chr2R 5237455 intron Nipped-A - chr2R_8_5235001 chr2R_5235001 RAL-890 443 chr2R 5418006 5418027 chr2R 5420637 5420659 Burdock 7 2632 3.5 6.5 5.0 1.2 2653 chr2R 5418006 intron laccase2 + chr2R 5419332 intron laccase2 + chr2R 5420659 intron laccase2 + chr2R_7_5415001 chr2R_5415001 RAL-890 444 chr2R 5475452 5475480 chr2R 5475716 5475744 6 264 2.0 1.5 1.8 2.1 292 chr2R 5475452 intron CG30440 - chr2R 5475598 intron CG30440 - chr2R 5475744 intron CG30440 - chr2R_6_5475001 chr2R_5475001 RAL-890 445 chr2R 5476354 5476381 chr2R 5476898 5476919 8 543 1.0 2.0 1.5 3.2 565 chr2R 5476354 intron CG30440 - chr2R 5476636 intron CG30440 - chr2R 5476919 intron CG30440 - chr2R_8_5475001 chr2R_5475001 RAL-890 446 chr2R 5543197 5543223 chr2R 5547281 5547307 invader1 6 4084 0.0 2.0 1.0 3.0 4110 chr2R 5543197 intron CG30438 + chr2R 5545252 intron CG30438 + chr2R 5547307 intron CG30438 + chr2R_6_5545001 chr2R_5545001 RAL-890 447 chr2R 5581398 5581425 chr2R 5627607 5627634 11 46209 0.5 4.5 2.5 3.1 46236 chr2R 5581398 intergenic not near genes chr2R 5604516 exon Fis1 - chr2R 5627634 intergenic not near genes chr2R_11_5600001 chr2R_5600001 RAL-890 448 chr2R 5790462 5790482 chr2R 5790547 5790567 5 85 1.0 1.5 1.2 2.3 105 chr2R 5790462 intergenic not near genes chr2R 5790514 intergenic not near genes chr2R 5790567 intergenic not near genes chr2R_5_5790001 chr2R_5790001 RAL-890 449 chr2R 5833056 5833083 chr2R 5833134 5833162 5 77 3.0 1.5 2.2 1.6 106 chr2R 5833056 intron dpr12 + chr2R 5833109 intron dpr12 + chr2R 5833162 intron dpr12 + chr2R_5_5830001 chr2R_5830001 RAL-890 450 chr2R 5869274 5869309 chr2R 5874350 5874384 flea 17 5075 2.5 6.5 4.5 3.1 5110 chr2R 5869274 intergenic not near genes chr2R 5871829 intergenic not near genes chr2R 5874384 intergenic not near genes chr2R_17_5870001 chr2R_5870001 RAL-890 451 chr2R 5878929 5878959 chr2R 5879007 5879038 12 79 3.0 5.5 4.2 2.3 109 chr2R 5878929 intergenic CG44438 - chr2R 5878984 intergenic CG44438 - chr2R 5879038 intergenic CG44438 - chr2R_12_5875001 chr2R_5875001 RAL-890 452 chr2R 5897007 5897039 chr2R 5897093 5897125 10 86 2.5 3.0 2.8 2.6 118 chr2R 5897007 intron CG43366 + chr2R 5897066 intron CG43366 + chr2R 5897125 intron CG43366 + chr2R_10_5895001 chr2R_5895001 RAL-890 453 chr2R 5902156 5902186 chr2R 5909715 5909745 17.6 9 7558 3.0 2.5 2.8 2.4 7589 chr2R 5902156 intron CG43366 + chr2R 5905950 intron CG43366 + chr2R 5909745 intron CG43366 + chr2R_9_5905001 chr2R_5905001 RAL-890 454 chr2R 5933796 5933826 chr2R 5933873 5933903 17 76 2.5 2.5 2.5 4.9 107 chr2R 5933796 intergenic not near genes chr2R 5933850 intergenic not near genes chr2R 5933903 intergenic not near genes chr2R_17_5930001 chr2R_5930001 RAL-890 455 chr2R 5945800 5945830 chr2R 5945893 5945923 4 93 3.0 3.5 3.2 1.0 123 chr2R 5945800 intergenic not near genes chr2R 5945862 intergenic not near genes chr2R 5945923 intergenic not near genes chr2R_4_5945001 chr2R_5945001 RAL-890 456 chr2R 5953084 5953097 chr2R 5953162 5953175 4 78 4.0 0.0 2.0 1.3 91 chr2R 5953084 intergenic not near genes chr2R 5953130 intergenic not near genes chr2R 5953175 intergenic not near genes chr2R_4_5950001 chr2R_5950001 RAL-890 457 chr2R 6033450 6033475 chr2R 6033535 6033560 7 83 2.5 2.0 2.2 2.2 110 chr2R 6033450 intron SCAP - chr2R 6033505 intron SCAP - chr2R 6033560 intron SCAP - chr2R_7_6030001 chr2R_6030001 RAL-890 458 chr2R 6096720 6096752 chr2R 6101911 6101924 BS 4 5186 5.0 1.0 3.0 1.0 5204 chr2R 6096720 intron EcR - chr2R 6099322 intron EcR - chr2R 6101924 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-890 459 chr2R 6173549 6173576 chr2R 6173627 6173654 5 78 1.5 1.0 1.2 2.3 105 chr2R 6173549 intergenic Cyp6w1 + chr2R 6173602 intergenic Cyp6w1 + chr2R 6173654 intergenic Cyp6w1 + chr2R_5_6170001 chr2R_6170001 RAL-890 460 chr2R 6247810 6247835 chr2R 6247888 6247913 8 78 2.0 2.0 2.0 2.7 103 chr2R 6247810 intron Pld + chr2R 6247862 intron Pld + chr2R 6247913 intron Pld + chr2R_8_6245001 chr2R_6245001 RAL-890 461 chr2R 6494530 6494546 chr2R 6499288 6499308 F-element 5 4758 1.5 2.5 2.0 1.7 4778 chr2R 6494530 intergenic not near genes chr2R 6496919 intergenic not near genes chr2R 6499308 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-890 462 chr2R 6518077 6518105 chr2R 6518162 6518190 10 83 3.5 3.5 3.5 2.2 113 chr2R 6518077 intron jing + chr2R 6518134 intron jing + chr2R 6518190 intron jing + chr2R_10_6515001 chr2R_6515001 RAL-890 463 chr2R 6530769 6530788 chr2R 6530849 6530868 7 80 1.5 1.5 1.5 2.8 99 chr2R 6530769 intron jing + chr2R 6530818 intron jing + chr2R 6530868 intron jing + chr2R_7_6530001 chr2R_6530001 RAL-890 464 chr2R 6551367 6551381 chr2R 6551456 6551470 4 89 1.5 4.5 3.0 1.0 103 chr2R 6551367 intron jing + chr2R 6551418 intron jing + chr2R 6551470 intron jing + chr2R_4_6550001 chr2R_6550001 RAL-890 465 chr2R 6579771 6579803 chr2R 6584857 6584889 flea 9 5086 3.5 1.0 2.2 2.8 5118 chr2R 6579771 intron jing + chr2R 6582330 intron jing + chr2R 6584889 intron jing + chr2R_9_6580001 chr2R_6580001 RAL-890 466 chr2R 6685875 6685895 chr2R 6685957 6685977 10 82 4.0 9.0 6.5 1.3 102 chr2R 6685875 intron,intron CG9422 +,Tdc2 - chr2R 6685926 intron,intron CG9422 +,Tdc2 - chr2R 6685977 intron,intron CG9422 +,Tdc2 - chr2R_10_6685001 chr2R_6685001 RAL-890 467 chr2R 6699590 6699624 chr2R 6699675 6699709 8 85 0.5 2.5 1.5 3.2 119 chr2R 6699590 intergenic Rab2 + chr2R 6699650 intergenic Rab2 + chr2R 6699709 intergenic Rab2 + chr2R_8_6695001 chr2R_6695001 RAL-890 468 chr2R 6712593 6712601 chr2R 6712690 6712698 4 97 5.5 5.0 5.2 0.6 105 chr2R 6712593 intron,intron CG3409 -,CG45092 - chr2R 6712646 intron,intron CG3409 -,CG45092 - chr2R 6712698 intron,intron CG3409 -,CG45092 - chr2R_4_6710001 chr2R_6710001 RAL-890 469 chr2R 6846311 6846327 chr2R 6846388 6846404 6 77 2.0 4.5 3.2 1.4 93 chr2R 6846311 intergenic not near genes chr2R 6846358 intergenic not near genes chr2R 6846404 intergenic not near genes chr2R_6_6845001 chr2R_6845001 RAL-890 470 chr2R 6876224 6876237 chr2R 6876306 6876313 7 81 6.5 2.5 4.5 1.3 89 chr2R 6876224 intron,intron CR44169 +,Spn42Da - chr2R 6876268 intron,intron CR44169 +,Spn42Da - chr2R 6876313 5` UTR,intron CR44169 +,Spn42Da - chr2R_7_6875001 chr2R_6875001 RAL-890 471 chr2R 6965261 6965281 chr2R 6965347 6965363 7 85 6.0 2.5 4.2 1.3 102 chr2R 6965261 intron,intron mim -,CheB42c - chr2R 6965312 intron,intron mim -,CheB42c - chr2R 6965363 intron,intron mim -,CheB42c - chr2R_7_6965001 chr2R_6965001 RAL-890 472 chr2R 7025912 7025927 chr2R 7025988 7026016 5 85 1.0 2.5 1.8 1.8 104 chr2R 7025912 intron Tsp42Ef + chr2R 7025964 intron Tsp42Ef + chr2R 7026016 intron Tsp42Ef + chr2R_5_7025001 chr2R_7025001 RAL-890 473 chr2R 7029716 7029730 chr2R 7029806 7029817 4 87 3.0 1.5 2.2 1.2 101 chr2R 7029716 intron Tsp42Eg + chr2R 7029766 intron Tsp42Eg + chr2R 7029817 intron Tsp42Eg + chr2R_4_7025001 chr2R_7025001 RAL-890 474 chr2R 7076386 7076418 chr2R 7076471 7076503 12 85 2.0 1.0 1.5 4.8 117 chr2R 7076386 intergenic not near genes chr2R 7076444 intergenic not near genes chr2R 7076503 intergenic not near genes chr2R_12_7075001 chr2R_7075001 RAL-890 475 chr2R 7091215 7091243 chr2R 7091297 7091325 7 82 1.5 2.5 2.0 2.3 110 chr2R 7091215 intron esn + chr2R 7091270 intron esn + chr2R 7091325 intron esn + chr2R_7_7090001 chr2R_7090001 RAL-890 476 chr2R 7166937 7166965 chr2R 7167016 7167042 11 79 1.0 2.5 1.8 3.9 105 chr2R 7166937 intron pk + chr2R 7166990 intron pk + chr2R 7167042 intron pk + chr2R_11_7165001 chr2R_7165001 RAL-890 477 chr2R 7196565 7196601 chr2R 7201340 7201372 F-element 6 4774 3.0 2.5 2.8 1.6 4807 chr2R 7196565 intron pk + chr2R 7198968 intron pk + chr2R 7201372 intron pk + chr2R_6_7195001 chr2R_7195001 RAL-890 478 chr2R 7235818 7235837 chr2R 7240910 7240928 jockey 4 5090 8.0 0.5 4.2 0.8 5110 chr2R 7235818 intergenic not near genes chr2R 7238373 intergenic not near genes chr2R 7240928 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-890 479 chr2R 7235840 7235853 chr2R 7240904 7240918 jockey 4 5070 4.0 0.5 2.2 1.2 5078 chr2R 7235840 intergenic not near genes chr2R 7238379 intergenic not near genes chr2R 7240918 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-890 480 chr2R 7313315 7313332 chr2R 7313397 7313414 7 82 2.0 3.5 2.8 1.8 99 chr2R 7313315 3` UTR CG12164 + chr2R 7313364 3` UTR CG12164 + chr2R 7313414 3` UTR CG12164 + chr2R_7_7310001 chr2R_7310001 RAL-890 481 chr2R 7353385 7353419 chr2R 7353491 7353525 11 106 3.0 2.5 2.8 2.9 140 chr2R 7353385 intron Dscam1 - chr2R 7353455 intron Dscam1 - chr2R 7353525 intron Dscam1 - chr2R_11_7350001 chr2R_7350001 RAL-890 482 chr2R 7417906 7418166 chr2R 7417992 7418245 12 82 4.5 5.5 5.0 2.0 339 chr2R 7417906 intergenic not near genes chr2R 7418076 intergenic not near genes chr2R 7418245 intergenic not near genes chr2R_12_7415001 chr2R_7415001 RAL-890 483 chr2R 7434896 7434918 chr2R 7439196 7439219 Juan 6 4301 7.5 4.0 5.8 0.9 4323 chr2R 7434896 intergenic so + chr2R 7437058 intergenic not near genes chr2R 7439219 intergenic not near genes chr2R_6_7435001 chr2R_7435001 RAL-890 484 chr2R 7459277 7459302 chr2R 7459365 7459390 11 88 3.0 1.5 2.2 3.4 113 chr2R 7459277 intergenic Inos -,CG11141 - chr2R 7459334 intergenic CG11141 -,Inos - chr2R 7459390 intergenic CG11141 - chr2R_11_7455001 chr2R_7455001 RAL-890 485 chr2R 7608406 7608436 chr2R 7613609 7613638 I-element 17 5201 4.5 4.0 4.2 3.3 5232 chr2R 7608406 intron CG1358 - chr2R 7611022 intron CG1358 - chr2R 7613638 intron CG1358 - chr2R_17_7610001 chr2R_7610001 RAL-890 486 chr2R 7692011 7692032 chr2R 7692092 7692113 5 81 4.0 3.0 3.5 1.1 102 chr2R 7692011 intron CG1399 - chr2R 7692062 intron CG1399 - chr2R 7692113 intron CG1399 - chr2R_5_7690001 chr2R_7690001 RAL-890 487 chr2R 7815671 7815702 chr2R 7822140 7822171 Burdock 11 6469 6.0 5.5 5.8 1.6 6500 chr2R 7815671 intergenic CG1882 + chr2R 7818921 intergenic not near genes chr2R 7822171 3` UTR cathD - chr2R_11_7815001 chr2R_7815001 RAL-890 488 chr2R 7869193 7869221 chr2R 7873978 7874007 Doc 9 4786 1.5 2.5 2.0 3.0 4814 chr2R 7869193 intron Dgk - chr2R 7871600 intron Dgk - chr2R 7874007 intron Dgk - chr2R_9_7870001 chr2R_7870001 RAL-890 489 chr2R 7897139 7897151 chr2R 7897228 7897240 6 89 0.0 7.0 3.5 1.3 101 chr2R 7897139 intron CG30377 + chr2R 7897190 intron CG30377 + chr2R 7897240 intron CG30377 + chr2R_6_7895001 chr2R_7895001 RAL-890 490 chr2R 7916431 7916451 chr2R 7916511 7916531 5 77 5.0 5.0 5.0 0.8 100 chr2R 7916431 5` UTR CG12159 - chr2R 7916481 intergenic CG12159 -,Cul1 + chr2R 7916531 intergenic CG12159 -,Cul1 + chr2R_5_7915001 chr2R_7915001 RAL-890 491 chr2R 7942941 7942956 chr2R 7943197 7943210 7 256 2.5 2.0 2.2 2.2 269 chr2R 7942941 intron CG14764 - chr2R 7943076 intron CG14764 - chr2R 7943210 intron CG14764 - chr2R_7_7940001 chr2R_7940001 RAL-890 492 chr2R 7943881 7943912 chr2R 7943970 7944003 12 91 2.5 3.0 2.8 3.2 122 chr2R 7943881 intron,exon CG14764 -,CG34430 + chr2R 7943942 intron,intron CG14764 -,CG34430 + chr2R 7944003 intron,intron CG14764 -,CG34430 + chr2R_12_7940001 chr2R_7940001 RAL-890 493 chr2R 8028569 8028590 chr2R 8028650 8028671 11 81 3.5 2.5 3.0 2.8 102 chr2R 8028569 intergenic CR43724 - chr2R 8028620 intergenic CR43724 - chr2R 8028671 intergenic CR43724 - chr2R_11_8025001 chr2R_8025001 RAL-890 494 chr2R 8049598 8049603 chr2R 8049730 8049735 4 132 1.5 5.0 3.2 1.0 137 chr2R 8049598 intergenic not near genes chr2R 8049666 intergenic not near genes chr2R 8049735 intergenic not near genes chr2R_4_8045001 chr2R_8045001 RAL-890 495 chr2R 8060507 8060515 chr2R 8060667 8060675 6 160 2.0 2.5 2.2 1.9 168 chr2R 8060507 intron CG12769 - chr2R 8060591 intron CG12769 - chr2R 8060675 intron CG12769 - chr2R_6_8060001 chr2R_8060001 RAL-890 496 chr2R 8067064 8067098 chr2R 8067148 8067182 10 83 4.5 3.0 3.8 2.1 118 chr2R 8067064 intron CG17977 - chr2R 8067123 intron CG17977 - chr2R 8067182 exon CG17977 - chr2R_10_8065001 chr2R_8065001 RAL-890 497 chr2R 8078928 8078960 chr2R 8079016 8079048 12 88 1.0 1.0 1.0 6.0 120 chr2R 8078928 3` UTR Vps28 - chr2R 8078988 3` UTR Vps28 - chr2R 8079048 3` UTR Vps28 - chr2R_12_8075001 chr2R_8075001 RAL-890 498 chr2R 8089255 8089285 chr2R 8089340 8089355 10 84 2.0 3.5 2.8 2.6 100 chr2R 8089255 3` UTR sut2 + chr2R 8089305 intergenic sut2 +,sut3 + chr2R 8089355 intergenic sut2 +,sut3 + chr2R_10_8085001 chr2R_8085001 RAL-890 499 chr2R 8105937 8105958 chr2R 8106028 8106049 6 90 1.0 2.0 1.5 2.4 112 chr2R 8105937 5` UTR Cul4 - chr2R 8105993 intron Cul4 - chr2R 8106049 5` UTR Cul4 - chr2R_6_8105001 chr2R_8105001 RAL-890 500 chr2R 8160942 8160953 chr2R 8161032 8161043 1360 7 90 1.0 11.5 6.2 1.0 101 chr2R 8160942 intron CG8708 - chr2R 8160992 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_7_8160001 chr2R_8160001 RAL-890 501 chr2R 8236037 8236063 chr2R 8236117 8236143 5 80 1.0 2.0 1.5 2.0 106 chr2R 8236037 intergenic not near genes chr2R 8236090 intergenic not near genes chr2R 8236143 intergenic not near genes chr2R_5_8235001 chr2R_8235001 RAL-890 502 chr2R 8249560 8249598 chr2R 8249642 8249680 13 82 2.5 0.0 1.2 5.9 120 chr2R 8249560 5` UTR CG44439 - chr2R 8249620 intergenic CG44439 - chr2R 8249680 intergenic CG44439 - chr2R_13_8245001 chr2R_8245001 RAL-890 503 chr2R 8330860 8330893 chr2R 8331346 8331379 roo 8 486 2.0 1.0 1.5 3.2 519 chr2R 8330860 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331379 intron pdm3 + chr2R_8_8330001 chr2R_8330001 RAL-890 504 chr2R 8483972 8483987 chr2R 8484048 8484063 7 76 2.0 7.0 4.5 1.3 91 chr2R 8483972 intron mtt - chr2R 8484018 intron mtt - chr2R 8484063 intron mtt - chr2R_7_8480001 chr2R_8480001 RAL-890 505 chr2R 8554256 8554277 chr2R 8554345 8554366 5 85 2.5 4.5 3.5 1.1 110 chr2R 8554256 intergenic not near genes chr2R 8554311 intergenic not near genes chr2R 8554366 intergenic not near genes chr2R_5_8550001 chr2R_8550001 RAL-890 506 chr2R 8567817 8567845 chr2R 8569398 8569426 8 1581 2.5 4.0 3.2 1.9 1609 chr2R 8567817 intergenic not near genes chr2R 8568622 intergenic not near genes chr2R 8569426 intergenic not near genes chr2R_8_8565001 chr2R_8565001 RAL-890 507 chr2R 8572838 8572919 chr2R 8572918 8573161 4 168 0.0 0.0 0.0 4.0 323 chr2R 8572838 intergenic not near genes chr2R 8573000 intergenic CG42326 - chr2R 8573161 intergenic CG42326 - chr2R_4_8570001 chr2R_8570001 RAL-890 508 chr2R 8582937 8583157 chr2R 8583070 8583247 10 107 2.0 7.0 4.5 1.8 310 chr2R 8582937 intron CG42326 - chr2R 8583092 intron CG42326 - chr2R 8583247 intron CG42326 - chr2R_10_8580001 chr2R_8580001 RAL-890 509 chr2R 8714709 8714719 chr2R 8714785 8714806 4 84 0.0 5.0 2.5 1.1 97 chr2R 8714709 3` UTR PGRP-SC1b + chr2R 8714758 3` UTR PGRP-SC1b + chr2R 8714806 3` UTR PGRP-SC1b + chr2R_4_8710001 chr2R_8710001 RAL-890 510 chr2R 8722770 8722793 chr2R 8723011 8723033 pogo 10 239 1.0 2.0 1.5 4.0 263 chr2R 8722770 intron CG14767 - chr2R 8722902 intron CG14767 - chr2R 8723033 intron CG14767 - chr2R_10_8720001 chr2R_8720001 RAL-890 511 chr2R 8759760 8759781 chr2R 8759839 8759859 6 78 4.5 1.5 3.0 1.5 99 chr2R 8759760 intergenic CG8740 + chr2R 8759810 intergenic CG8740 + chr2R 8759859 intergenic CG8740 + chr2R_6_8755001 chr2R_8755001 RAL-890 512 chr2R 8833429 8833445 chr2R 8833511 8833527 10 80 3.5 3.0 3.2 2.4 98 chr2R 8833429 intron sns + chr2R 8833478 intron sns + chr2R 8833527 intron sns + chr2R_10_8830001 chr2R_8830001 RAL-890 513 chr2R 9031980 9032008 chr2R 9032058 9032086 7 78 4.0 7.5 5.8 1.0 106 chr2R 9031980 intergenic not near genes chr2R 9032033 intergenic not near genes chr2R 9032086 intergenic not near genes chr2R_7_9030001 chr2R_9030001 RAL-890 514 chr2R 9065913 9065949 chr2R 9065995 9066031 14 82 5.0 3.0 4.0 2.8 118 chr2R 9065913 intron ana + chr2R 9065972 intron ana + chr2R 9066031 intron ana + chr2R_14_9065001 chr2R_9065001 RAL-890 515 chr2R 9151304 9151335 chr2R 9157773 9157805 Burdock 6 6469 2.5 4.5 3.5 1.3 6501 chr2R 9151304 3` UTR CG30345 + chr2R 9154554 intergenic not near genes chr2R 9157805 intergenic CG8008 - chr2R_6_9150001 chr2R_9150001 RAL-890 516 chr2R 9183132 9183140 chr2R 9183214 9183222 5 82 4.5 2.0 3.2 1.2 90 chr2R 9183132 intron ltd - chr2R 9183177 intron ltd - chr2R 9183222 intron ltd - chr2R_5_9180001 chr2R_9180001 RAL-890 517 chr2R 9212693 9212718 chr2R 9213179 9213202 roo 8 485 3.5 3.5 3.5 1.8 509 chr2R 9212693 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213202 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-890 518 chr2R 9227868 9227904 chr2R 9227955 9227991 17 85 2.5 5.0 3.8 3.5 123 chr2R 9227868 3` UTR hig - chr2R 9227930 3` UTR hig - chr2R 9227991 3` UTR hig - chr2R_17_9225001 chr2R_9225001 RAL-890 519 chr2R 9270455 9270474 chr2R 9270530 9270561 9 82 3.5 4.0 3.8 1.9 106 chr2R 9270455 intron Pkn - chr2R 9270508 intron Pkn - chr2R 9270561 intron Pkn - chr2R_9_9270001 chr2R_9270001 RAL-890 520 chr2R 9407823 9407861 chr2R 9407916 9407950 12 92 4.0 4.5 4.2 2.3 127 chr2R 9407823 intron wun - chr2R 9407886 intron wun - chr2R 9407950 intron wun - chr2R_12_9405001 chr2R_9405001 RAL-890 521 chr2R 9442987 9443018 chr2R 9443066 9443097 12 78 3.5 3.0 3.2 2.9 110 chr2R 9442987 intron ced-6 - chr2R 9443042 intron ced-6 - chr2R 9443097 intron ced-6 - chr2R_12_9440001 chr2R_9440001 RAL-890 522 chr2R 9461243 9461259 chr2R 9461331 9461348 5 89 3.5 5.0 4.2 1.0 105 chr2R 9461243 intron Camta + chr2R 9461296 intron Camta + chr2R 9461348 intron Camta + chr2R_5_9460001 chr2R_9460001 RAL-890 523 chr2R 9480077 9480105 chr2R 9490608 9490636 roo 12 10531 3.5 0.5 2.0 4.0 10559 chr2R 9480077 intergenic not near genes chr2R 9485356 intergenic not near genes chr2R 9490636 intergenic not near genes chr2R_12_9485001 chr2R_9485001 RAL-890 524 chr2R 9541623 9541652 chr2R 9541700 9541729 15 76 0.0 1.5 0.8 8.3 106 chr2R 9541623 intergenic brp +,CG1888 - chr2R 9541676 intergenic brp +,CG1888 - chr2R 9541729 intergenic brp +,CG1888 - chr2R_15_9540001 chr2R_9540001 RAL-890 525 chr2R 9561828 9561848 chr2R 9561916 9561936 6 88 1.0 3.0 2.0 2.0 108 chr2R 9561828 3` UTR,intron CR45281 -,CG1809 + chr2R 9561882 3` UTR,intron CR45281 -,CG1809 + chr2R 9561936 3` UTR,intron CR45281 -,CG1809 + chr2R_6_9560001 chr2R_9560001 RAL-890 526 chr2R 9672075 9672082 chr2R 9672179 9672186 5 104 2.5 3.0 2.8 1.3 111 chr2R 9672075 intron Mmp2 - chr2R 9672130 intron Mmp2 - chr2R 9672186 intron Mmp2 - chr2R_5_9670001 chr2R_9670001 RAL-890 527 chr2R 9699408 9699440 chr2R 9699495 9699527 6 85 4.5 3.0 3.8 1.2 119 chr2R 9699408 intergenic not near genes chr2R 9699468 intergenic not near genes chr2R 9699527 intergenic not near genes chr2R_6_9695001 chr2R_9695001 RAL-890 528 chr2R 9726612 9726638 chr2R 9734163 9734189 17.6 8 7551 5.5 4.0 4.8 1.4 7577 chr2R 9726612 intron sqa - chr2R 9730400 intron sqa - chr2R 9734189 intron sqa - chr2R_8_9730001 chr2R_9730001 RAL-890 529 chr2R 9871038 9871074 chr2R 9871524 9871560 roo 10 486 3.5 3.0 3.2 2.4 522 chr2R 9871038 intron cbx - chr2R 9871299 intron cbx - chr2R 9871560 intron,5` UTR cbx -,CG18446 + chr2R_10_9870001 chr2R_9870001 RAL-890 530 chr2R 9928426 9928448 chr2R 9928547 9928573 11 124 3.0 3.5 3.2 2.6 147 chr2R 9928426 intron Mef2 - chr2R 9928500 intron Mef2 - chr2R 9928573 intron Mef2 - chr2R_11_9925001 chr2R_9925001 RAL-890 531 chr2R 9935027 9935060 chr2R 9935109 9935142 7 82 2.0 2.5 2.2 2.2 115 chr2R 9935027 intron Mef2 - chr2R 9935084 intron Mef2 - chr2R 9935142 intron Mef2 - chr2R_7_9935001 chr2R_9935001 RAL-890 532 chr2R 9956063 9956089 chr2R 9956140 9956166 10 76 3.5 4.5 4.0 2.0 103 chr2R 9956063 intron Mef2 - chr2R 9956114 intron Mef2 - chr2R 9956166 intron Mef2 - chr2R_10_9955001 chr2R_9955001 RAL-890 533 chr2R 10004592 10004625 chr2R 10004688 10004707 9 96 2.5 2.5 2.5 2.6 115 chr2R 10004592 intron Pka-R2 - chr2R 10004650 intron Pka-R2 - chr2R 10004707 intron Pka-R2 - chr2R_9_10000001 chr2R_10000001 RAL-890 534 chr2R 10005848 10005879 chr2R 10007013 10007044 1360 8 1162 5.5 2.0 3.8 1.7 1196 chr2R 10005848 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007044 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-890 535 chr2R 10132213 10132222 chr2R 10132287 10132302 4 78 0.0 4.0 2.0 1.3 89 chr2R 10132213 intron gem + chr2R 10132258 intron gem + chr2R 10132302 intron gem + chr2R_4_10130001 chr2R_10130001 RAL-890 536 chr2R 10176882 10176905 chr2R 10186049 10186071 roo 7 9166 5.0 2.5 3.8 1.5 9189 chr2R 10176882 intron KCNQ - chr2R 10181476 intron KCNQ - chr2R 10186071 intron KCNQ - chr2R_7_10180001 chr2R_10180001 RAL-890 537 chr2R 10203645 10203661 chr2R 10203730 10203746 4 82 4.5 3.0 3.8 0.8 101 chr2R 10203645 intergenic not near genes chr2R 10203696 intergenic not near genes chr2R 10203746 intergenic not near genes chr2R_4_10200001 chr2R_10200001 RAL-890 538 chr2R 10216195 10216224 chr2R 10216272 10216302 10 78 2.0 2.5 2.2 3.1 107 chr2R 10216195 intron,intron CG12912 -,Hr46 - chr2R 10216248 intron,intron CG12912 -,Hr46 - chr2R 10216302 intron,intron CG12912 -,Hr46 - chr2R_10_10215001 chr2R_10215001 RAL-890 539 chr2R 10263187 10263208 chr2R 10263274 10263294 10 87 4.0 3.5 3.8 2.1 107 chr2R 10263187 3` UTR CR30009 - chr2R 10263240 3` UTR CR30009 - chr2R 10263294 3` UTR CR30009 - chr2R_10_10260001 chr2R_10260001 RAL-890 540 chr2R 10290115 10290141 chr2R 10290196 10290222 9 81 2.0 3.0 2.5 2.6 107 chr2R 10290115 intron CAP + chr2R 10290168 intron CAP + chr2R 10290222 intron CAP + chr2R_9_10290001 chr2R_10290001 RAL-890 541 chr2R 10300647 10300663 chr2R 10300743 10300759 7 96 0.5 0.5 0.5 4.7 112 chr2R 10300647 intron CAP + chr2R 10300703 intron CAP + chr2R 10300759 intron CAP + chr2R_7_10300001 chr2R_10300001 RAL-890 542 chr2R 10313319 10313347 chr2R 10313407 10313435 6 88 2.0 2.0 2.0 2.0 116 chr2R 10313319 intergenic not near genes chr2R 10313377 intergenic not near genes chr2R 10313435 intergenic Ndg + chr2R_6_10310001 chr2R_10310001 RAL-890 543 chr2R 10318516 10318544 chr2R 10318602 10318630 8 86 0.0 0.5 0.2 6.7 114 chr2R 10318516 intron Ndg + chr2R 10318573 intron Ndg + chr2R 10318630 intron Ndg + chr2R_8_10315001 chr2R_10315001 RAL-890 544 chr2R 10387977 10388002 chr2R 10388074 10388099 7 97 0.0 1.0 0.5 4.7 122 chr2R 10387977 intron CG42732 - chr2R 10388038 intron CG42732 - chr2R 10388099 intron CG42732 - chr2R_7_10385001 chr2R_10385001 RAL-890 545 chr2R 10400401 10400428 chr2R 10400479 10400508 9 77 1.5 4.5 3.0 2.2 107 chr2R 10400401 intron CG42732 - chr2R 10400454 intron CG42732 - chr2R 10400508 intron CG42732 - chr2R_9_10400001 chr2R_10400001 RAL-890 546 chr2R 10409068 10409083 chr2R 10409144 10409159 15 76 0.0 0.0 0.0 15.0 91 chr2R 10409068 intron CG42732 - chr2R 10409114 intron CG42732 - chr2R 10409159 intron,exon CG42732 -,CG33477 - chr2R_15_10405001 chr2R_10405001 RAL-890 547 chr2R 10454105 10454128 chr2R 10454182 10454205 10 77 5.0 8.0 6.5 1.3 100 chr2R 10454105 intron,intron Galphao +,Cyp49a1 - chr2R 10454155 intron,intron Galphao +,Cyp49a1 - chr2R 10454205 intron,intron Galphao +,Cyp49a1 - chr2R_10_10450001 chr2R_10450001 RAL-890 548 chr2R 10574630 10574647 chr2R 10574709 10574728 5 81 6.0 4.5 5.2 0.8 98 chr2R 10574630 intron psq + chr2R 10574679 intron psq + chr2R 10574728 intron psq + chr2R_5_10570001 chr2R_10570001 RAL-890 549 chr2R 10577472 10577495 chr2R 10577557 10577580 5 85 2.0 6.0 4.0 1.0 108 chr2R 10577472 intron psq + chr2R 10577526 intron psq + chr2R 10577580 intron psq + chr2R_5_10575001 chr2R_10575001 RAL-890 550 chr2R 10585573 10585590 chr2R 10594156 10594173 Tirant 8 8583 3.5 1.0 2.2 2.5 8600 chr2R 10585573 intron psq + chr2R 10589873 intron psq + chr2R 10594173 intron psq + chr2R_8_10585001 chr2R_10585001 RAL-890 551 chr2R 10621239 10621263 chr2R 10621354 10621378 4 115 4.0 3.5 3.8 0.8 139 chr2R 10621239 intron CG11883 + chr2R 10621308 intron CG11883 + chr2R 10621378 intron CG11883 + chr2R_4_10620001 chr2R_10620001 RAL-890 552 chr2R 10644065 10644081 chr2R 10644143 10644159 6 78 0.5 1.5 1.0 3.0 94 chr2R 10644065 intron Git - chr2R 10644112 intron Git - chr2R 10644159 intron Git - chr2R_6_10640001 chr2R_10640001 RAL-890 553 chr2R 10652228 10652259 chr2R 10652357 10652389 5 124 1.5 3.5 2.5 1.4 161 chr2R 10652228 intergenic not near genes chr2R 10652308 intergenic not near genes chr2R 10652389 intergenic not near genes chr2R_5_10650001 chr2R_10650001 RAL-890 554 chr2R 10675409 10675414 chr2R 10675490 10675495 5 81 1.0 0.0 0.5 3.3 86 chr2R 10675409 intron stan + chr2R 10675452 intron stan + chr2R 10675495 intron stan + chr2R_5_10675001 chr2R_10675001 RAL-890 555 chr2R 10771008 10771025 chr2R 10771083 10771106 7 80 2.5 7.0 4.8 1.2 98 chr2R 10771008 intron CG33144 - chr2R 10771057 intron CG33144 - chr2R 10771106 intron CG33144 - chr2R_7_10770001 chr2R_10770001 RAL-890 556 chr2R 10834085 10834108 chr2R 10834178 10834201 6 93 4.5 1.0 2.8 1.6 116 chr2R 10834085 intron CG12344 - chr2R 10834143 intron CG12344 - chr2R 10834201 intron CG12344 - chr2R_6_10830001 chr2R_10830001 RAL-890 557 chr2R 10947095 10947100 chr2R 10947182 10947187 4 87 5.5 0.0 2.8 1.1 92 chr2R 10947095 5` UTR CR45228 + chr2R 10947141 intergenic CR45228 + chr2R 10947187 intergenic CR45228 + chr2R_4_10945001 chr2R_10945001 RAL-890 558 chr2R 10948025 10948062 chr2R 10955576 10955613 17.6 5 7551 1.5 4.0 2.8 1.3 7588 chr2R 10948025 intergenic not near genes chr2R 10951819 intergenic not near genes chr2R 10955613 intergenic not near genes chr2R_5_10950001 chr2R_10950001 RAL-890 559 chr2R 10975002 10975008 chr2R 10975111 10975117 4 109 4.5 0.5 2.5 1.1 115 chr2R 10975002 intergenic not near genes chr2R 10975060 intergenic not near genes chr2R 10975117 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-890 560 chr2R 10979670 10979687 chr2R 10980141 10980158 297 5 472 1.0 2.5 1.8 1.8 488 chr2R 10979670 intergenic not near genes chr2R 10979914 intergenic not near genes chr2R 10980158 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-890 561 chr2R 11009813 11009845 chr2R 11018987 11019014 roo 10 9172 3.5 5.0 4.2 1.9 9201 chr2R 11009813 intron luna - chr2R 11014414 intron luna - chr2R 11019014 intron luna - chr2R_10_11010001 chr2R_11010001 RAL-890 562 chr2R 11019882 11019893 chr2R 11024940 11024959 jockey 4 5064 3.0 2.0 2.5 1.1 5077 chr2R 11019882 intron luna - chr2R 11022420 intron luna - chr2R 11024959 intron luna - chr2R_4_11020001 chr2R_11020001 RAL-890 563 chr2R 11059660 11059693 chr2R 11059736 11059770 16 77 3.5 3.0 3.2 3.8 110 chr2R 11059660 intron luna - chr2R 11059715 intron luna - chr2R 11059770 intron luna - chr2R_16_11055001 chr2R_11055001 RAL-890 564 chr2R 11129817 11129848 chr2R 11129900 11129931 4 83 1.5 0.5 1.0 2.0 114 chr2R 11129817 intergenic not near genes chr2R 11129874 intergenic not near genes chr2R 11129931 intergenic not near genes chr2R_4_11125001 chr2R_11125001 RAL-890 565 chr2R 11133407 11133424 chr2R 11133627 11133632 6 220 4.5 0.0 2.2 1.9 225 chr2R 11133407 intergenic not near genes chr2R 11133520 intergenic not near genes chr2R 11133632 intergenic not near genes chr2R_6_11130001 chr2R_11130001 RAL-890 566 chr2R 11179268 11179287 chr2R 11179354 11179373 6 86 4.5 5.5 5.0 1.0 105 chr2R 11179268 intron shn + chr2R 11179320 intron shn + chr2R 11179373 intron shn + chr2R_6_11175001 chr2R_11175001 RAL-890 567 chr2R 11207813 11207843 chr2R 11208005 11208035 BS 9 187 5.0 3.0 4.0 1.8 222 chr2R 11207813 intron shn + chr2R 11207924 intron shn + chr2R 11208035 intron shn + chr2R_9_11205001 chr2R_11205001 RAL-890 568 chr2R 11265724 11265734 chr2R 11265806 11265814 4 81 3.5 0.0 1.8 1.4 90 chr2R 11265724 exon Cpr47Ee + chr2R 11265769 intron Cpr47Ee + chr2R 11265814 intron Cpr47Ee + chr2R_4_11265001 chr2R_11265001 RAL-890 569 chr2R 11276803 11276818 chr2R 11276971 11276985 8 168 2.0 2.5 2.2 2.5 182 chr2R 11276803 intergenic not near genes chr2R 11276894 intergenic not near genes chr2R 11276985 intergenic not near genes chr2R_8_11275001 chr2R_11275001 RAL-890 570 chr2R 11292975 11292993 chr2R 11293050 11293069 6 78 3.5 0.0 1.8 2.1 94 chr2R 11292975 exon,3` UTR dare -,CG30033 + chr2R 11293022 5` UTR,3` UTR dare -,CG30033 + chr2R 11293069 5` UTR,3` UTR dare -,CG30033 + chr2R_6_11290001 chr2R_11290001 RAL-890 571 chr2R 11297616 11297642 chr2R 11301937 11301962 flea 8 4321 7.0 5.0 6.0 1.1 4346 chr2R 11297616 intergenic CG42336 - chr2R 11299789 intergenic not near genes chr2R 11301962 5` UTR CG7741 + chr2R_8_11295001 chr2R_11295001 RAL-890 572 chr2R 11415523 11415548 chr2R 11418672 11418691 opus 9 3147 2.0 5.0 3.5 2.0 3168 chr2R 11415523 intron Drip - chr2R 11417107 intron Drip - chr2R 11418691 intron Drip - chr2R_9_11415001 chr2R_11415001 RAL-890 573 chr2R 11420661 11420668 chr2R 11420742 11420747 6 80 2.5 1.5 2.0 2.0 86 chr2R 11420661 intron Drip - chr2R 11420704 intron Drip - chr2R 11420747 intron Drip - chr2R_6_11420001 chr2R_11420001 RAL-890 574 chr2R 11472647 11472675 chr2R 11473844 11473872 pogo 9 1196 4.5 6.5 5.5 1.4 1225 chr2R 11472647 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473872 intergenic not near genes chr2R_9_11470001 chr2R_11470001 RAL-890 575 chr2R 11636436 11636441 chr2R 11636489 11636519 5 69 0.5 1.5 1.0 2.5 83 chr2R 11636436 intron CG9005 - chr2R 11636478 intron CG9005 - chr2R 11636519 intron CG9005 - chr2R_5_11635001 chr2R_11635001 RAL-890 576 chr2R 11677882 11677894 chr2R 11677956 11677972 5 77 0.0 3.0 1.5 2.0 90 chr2R 11677882 intron,exon Roc2 -,Tret1-2 + chr2R 11677927 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677972 intron,3` UTR Roc2 -,Tret1-2 + chr2R_5_11675001 chr2R_11675001 RAL-890 577 chr2R 11825155 11825183 chr2R 11825527 11825555 7 372 12.5 19.0 15.8 0.4 400 chr2R 11825155 intergenic CG13192 + chr2R 11825355 5` UTR CG13192 + chr2R 11825555 intron CG13192 + chr2R_7_11825001 chr2R_11825001 RAL-890 578 chr2R 11934080 11934102 chr2R 11934161 11934182 12 81 4.0 2.5 3.2 2.9 102 chr2R 11934080 intergenic not near genes chr2R 11934131 intergenic not near genes chr2R 11934182 intergenic not near genes chr2R_12_11930001 chr2R_11930001 RAL-890 579 chr2R 11951072 11951097 chr2R 11953190 11953215 6 2118 17.5 20.5 19.0 0.3 2143 chr2R 11951072 intron CG13188 + chr2R 11952144 intron CG13188 + chr2R 11953215 intron CG13188 + chr2R_6_11950001 chr2R_11950001 RAL-890 580 chr2R 11951345 11951375 chr2R 11951422 11951452 12 77 2.5 4.5 3.5 2.7 107 chr2R 11951345 intron CG13188 + chr2R 11951398 intron CG13188 + chr2R 11951452 intron CG13188 + chr2R_12_11950001 chr2R_11950001 RAL-890 581 chr2R 12110276 12110308 chr2R 12110391 12110423 11 115 2.5 2.0 2.2 3.4 147 chr2R 12110276 intron jeb - chr2R 12110350 intron jeb - chr2R 12110423 intron jeb - chr2R_11_12110001 chr2R_12110001 RAL-890 582 chr2R 12186006 12186037 chr2R 12186101 12186132 16 95 2.5 5.5 4.0 3.2 126 chr2R 12186006 intron Cyp6g1 + chr2R 12186069 intron Cyp6g1 + chr2R 12186132 intron Cyp6g1 + chr2R_16_12185001 chr2R_12185001 RAL-890 583 chr2R 12187472 12187508 chr2R 12190088 12190124 17 2618 46.0 46.5 46.2 0.4 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_17_12185001 chr2R_12185001 RAL-890 584 chr2R 12217575 12217602 chr2R 12217656 12217683 12 80 0.5 2.5 1.5 4.8 108 chr2R 12217575 intergenic not near genes chr2R 12217629 intergenic not near genes chr2R 12217683 intergenic not near genes chr2R_12_12215001 chr2R_12215001 RAL-890 585 chr2R 12285387 12285402 chr2R 12285484 12285499 4 97 1.0 0.0 0.5 2.7 112 chr2R 12285387 intron CG42700 + chr2R 12285443 intron CG42700 + chr2R 12285499 intron CG42700 + chr2R_4_12285001 chr2R_12285001 RAL-890 586 chr2R 12363379 12363416 chr2R 12363811 12363846 15 431 6.0 6.0 6.0 2.1 467 chr2R 12363379 intergenic CG30043 + chr2R 12363612 intergenic CG30043 + chr2R 12363846 intergenic not near genes chr2R_15_12360001 chr2R_12360001 RAL-890 587 chr2R 12377494 12377527 chr2R 12377616 12377649 7 121 4.5 1.5 3.0 1.8 155 chr2R 12377494 intergenic Cpr49Aa + chr2R 12377572 intergenic Cpr49Aa + chr2R 12377649 intergenic Cpr49Aa + chr2R_7_12375001 chr2R_12375001 RAL-890 588 chr2R 12385343 12385374 chr2R 12385424 12385455 13 79 0.0 0.5 0.2 10.8 112 chr2R 12385343 intergenic not near genes chr2R 12385399 intergenic not near genes chr2R 12385455 intergenic not near genes chr2R_13_12385001 chr2R_12385001 RAL-890 589 chr2R 12501709 12501723 chr2R 12503867 12503883 Rt1c 4 2160 1.5 7.5 4.5 0.7 2174 chr2R 12501709 intron fdl - chr2R 12502796 intron fdl - chr2R 12503883 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-890 590 chr2R 12529909 12529928 chr2R 12530002 12530021 7 93 5.0 0.0 2.5 2.0 112 chr2R 12529909 intron fra + chr2R 12529965 intron fra + chr2R 12530021 intron fra + chr2R_7_12525001 chr2R_12525001 RAL-890 591 chr2R 12565565 12565571 chr2R 12565943 12565949 4 378 0.0 3.5 1.8 1.4 384 chr2R 12565565 intergenic not near genes chr2R 12565757 intergenic Cyp301a1 + chr2R 12565949 intergenic Cyp301a1 + chr2R_4_12565001 chr2R_12565001 RAL-890 592 chr2R 12602731 12602747 chr2R 12602870 12602886 6 139 2.0 4.0 3.0 1.5 155 chr2R 12602731 intron Amph + chr2R 12602808 intron Amph + chr2R 12602886 intron Amph + chr2R_6_12600001 chr2R_12600001 RAL-890 593 chr2R 12777804 12777827 chr2R 12777912 12777935 7 109 0.0 0.0 0.0 7.0 131 chr2R 12777804 5` UTR CR45266 + chr2R 12777870 5` UTR CR45266 + chr2R 12777935 5` UTR CR45266 + chr2R_7_12775001 chr2R_12775001 RAL-890 594 chr2R 12815618 12815633 chr2R 12816338 12816353 6 720 0.5 4.5 2.5 1.7 735 chr2R 12815618 intergenic not near genes chr2R 12815986 intergenic not near genes chr2R 12816353 intergenic not near genes chr2R_6_12815001 chr2R_12815001 RAL-890 595 chr2R 12819453 12819474 chr2R 12824522 12824537 jockey 4 5067 3.5 6.5 5.0 0.7 5084 chr2R 12819453 intergenic not near genes chr2R 12821995 intergenic not near genes chr2R 12824537 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-890 596 chr2R 12928693 12928707 chr2R 12931800 12931814 4 3108 4.5 20.5 12.5 0.3 3121 chr2R 12928693 intron sug + chr2R 12930254 exon sug + chr2R 12931814 exon CG17019 - chr2R_4_12930001 chr2R_12930001 RAL-890 597 chr2R 13012136 13012153 chr2R 13012233 13012250 6 97 1.0 2.0 1.5 2.4 114 chr2R 13012136 intergenic not near genes chr2R 13012193 intergenic not near genes chr2R 13012250 intergenic not near genes chr2R_6_13010001 chr2R_13010001 RAL-890 598 chr2R 13136850 13136867 chr2R 13141647 13141664 Doc 5 4797 1.5 3.0 2.2 1.6 4814 chr2R 13136850 exon Cap-G + chr2R 13139257 intron Cap-G + chr2R 13141664 intron Cap-G + chr2R_5_13135001 chr2R_13135001 RAL-890 599 chr2R 13167414 13167422 chr2R 13167496 13167503 4 82 2.5 1.5 2.0 1.3 89 chr2R 13167414 intron GLaz - chr2R 13167458 intron GLaz - chr2R 13167503 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-890 600 chr2R 13172093 13172111 chr2R 13172171 13172186 4 77 1.0 2.0 1.5 1.6 93 chr2R 13172093 intron AGBE + chr2R 13172140 intron AGBE + chr2R 13172186 intron AGBE + chr2R_4_13170001 chr2R_13170001 RAL-890 601 chr2R 13196433 13196463 chr2R 13197099 13197126 4 664 25.0 10.5 17.8 0.2 693 chr2R 13196433 intergenic not near genes chr2R 13196780 intergenic not near genes chr2R 13197126 intergenic not near genes chr2R_4_13195001 chr2R_13195001 RAL-890 602 chr2R 13235507 13235531 chr2R 13235587 13235611 4 80 2.0 3.0 2.5 1.1 104 chr2R 13235507 intergenic CG4670 -,CG4676 + chr2R 13235559 intergenic CG4670 -,CG4676 + chr2R 13235611 intergenic CG4670 -,CG4676 + chr2R_4_13235001 chr2R_13235001 RAL-890 603 chr2R 13309661 13309680 chr2R 13309779 13309798 6 118 3.0 0.0 1.5 2.4 137 chr2R 13309661 intergenic not near genes chr2R 13309730 intergenic not near genes chr2R 13309798 intergenic not near genes chr2R_6_13305001 chr2R_13305001 RAL-890 604 chr2R 13431488 13431516 chr2R 13431567 13431594 8 79 3.0 1.0 2.0 2.7 106 chr2R 13431488 intron CG42321 - chr2R 13431541 intron CG42321 - chr2R 13431594 intron CG42321 - chr2R_8_13430001 chr2R_13430001 RAL-890 605 chr2R 13439109 13439120 chr2R 13439224 13439235 6 114 3.5 2.0 2.8 1.6 126 chr2R 13439109 intergenic CG42321 -,cnn - chr2R 13439172 intergenic CG42321 -,cnn - chr2R 13439235 intergenic cnn -,CG42321 - chr2R_6_13435001 chr2R_13435001 RAL-890 606 chr2R 13446690 13446709 chr2R 13446771 13446790 5 81 1.5 0.0 0.8 2.8 100 chr2R 13446690 intron cnn - chr2R 13446740 intron cnn - chr2R 13446790 intron cnn - chr2R_5_13445001 chr2R_13445001 RAL-890 607 chr2R 13580496 13580530 chr2R 13580846 13580879 jockey 11 349 0.0 2.0 1.0 5.5 383 chr2R 13580496 3` UTR CG6191 - chr2R 13580688 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580879 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_11_13580001 chr2R_13580001 RAL-890 608 chr2R 13589995 13590026 chr2R 13590094 13590134 9 100 28.0 25.5 26.8 0.3 139 chr2R 13589995 intron,intron CG6191 -,CG45088 - chr2R 13590064 intron,intron CG6191 -,CG45088 - chr2R 13590134 intron,intron CG6191 -,CG45088 - chr2R_9_13590001 chr2R_13590001 RAL-890 609 chr2R 13694630 13694661 chr2R 13694707 13694738 6 77 2.5 3.0 2.8 1.6 108 chr2R 13694630 intron fas + chr2R 13694684 intron fas + chr2R 13694738 intron fas + chr2R_6_13690001 chr2R_13690001 RAL-890 610 chr2R 13728133 13728166 chr2R 13735790 13735823 opus 10 7657 4.0 2.5 3.2 2.4 7690 chr2R 13728133 intron fas + chr2R 13731978 intron fas + chr2R 13735823 intron fas + chr2R_10_13730001 chr2R_13730001 RAL-890 611 chr2R 13768987 13769001 chr2R 13769086 13769099 4 99 3.0 3.0 3.0 1.0 112 chr2R 13768987 intergenic not near genes chr2R 13769043 intergenic not near genes chr2R 13769099 intergenic not near genes chr2R_4_13765001 chr2R_13765001 RAL-890 612 chr2R 13790328 13790340 chr2R 13790404 13790416 4 76 2.5 0.0 1.2 1.8 88 chr2R 13790328 intergenic not near genes chr2R 13790372 intergenic not near genes chr2R 13790416 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-890 613 chr2R 13868897 13868930 chr2R 13868976 13869009 11 79 2.0 4.0 3.0 2.8 112 chr2R 13868897 intron shot - chr2R 13868953 intron shot - chr2R 13869009 intron shot - chr2R_11_13865001 chr2R_13865001 RAL-890 614 chr2R 13905600 13905636 chr2R 13907582 13907618 Rt1a 5 1982 4.0 1.5 2.8 1.3 2018 chr2R 13905600 intron shot - chr2R 13906609 intron shot - chr2R 13907618 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-890 615 chr2R 14018155 14018189 chr2R 14018239 14018273 6 84 3.0 6.0 4.5 1.1 118 chr2R 14018155 intron mam + chr2R 14018214 intron mam + chr2R 14018273 intron mam + chr2R_6_14015001 chr2R_14015001 RAL-890 616 chr2R 14037268 14037298 chr2R 14037351 14037381 7 83 0.0 1.5 0.8 3.9 113 chr2R 14037268 intron mam + chr2R 14037324 intron mam + chr2R 14037381 intron mam + chr2R_7_14035001 chr2R_14035001 RAL-890 617 chr2R 14093432 14093443 chr2R 14109583 14109594 5 16151 3.5 3.5 3.5 1.1 16162 chr2R 14093432 intron Prosap - chr2R 14101513 intron Prosap - chr2R 14109594 intron Prosap - chr2R_5_14100001 chr2R_14100001 RAL-890 618 chr2R 14352690 14352710 chr2R 14352784 14352801 5 93 4.0 3.5 3.8 1.0 111 chr2R 14352690 exon CG8613 + chr2R 14352746 intron CG8613 + chr2R 14352801 intron CG8613 + chr2R_5_14350001 chr2R_14350001 RAL-890 619 chr2R 14352711 14352718 chr2R 14352783 14352812 6 89 3.0 3.5 3.2 1.4 101 chr2R 14352711 exon CG8613 + chr2R 14352762 intron CG8613 + chr2R 14352812 intron CG8613 + chr2R_6_14350001 chr2R_14350001 RAL-890 620 chr2R 14357569 14357575 chr2R 14357658 14357665 4 90 1.5 4.0 2.8 1.1 96 chr2R 14357569 intergenic CG8617 -,Arc1 - chr2R 14357617 intergenic Arc1 -,CG8617 - chr2R 14357665 intergenic Arc1 -,CG8617 - chr2R_4_14355001 chr2R_14355001 RAL-890 621 chr2R 14386432 14386467 chr2R 14386519 14386553 11 87 2.0 2.0 2.0 3.7 121 chr2R 14386432 intergenic not near genes chr2R 14386492 intergenic not near genes chr2R 14386553 intergenic not near genes chr2R_11_14385001 chr2R_14385001 RAL-890 622 chr2R 14405554 14405585 chr2R 14405890 14405922 9 335 3.0 2.5 2.8 2.4 368 chr2R 14405554 intergenic not near genes chr2R 14405738 intergenic not near genes chr2R 14405922 intergenic not near genes chr2R_9_14405001 chr2R_14405001 RAL-890 623 chr2R 14460703 14460733 chr2R 14460787 14460816 7 84 2.0 3.0 2.5 2.0 113 chr2R 14460703 intron Oaz + chr2R 14460760 intron Oaz + chr2R 14460816 intron Oaz + chr2R_7_14460001 chr2R_14460001 RAL-890 624 chr2R 14467305 14467327 chr2R 14476463 14476485 roo 5 9158 1.5 3.0 2.2 1.6 9180 chr2R 14467305 intergenic not near genes chr2R 14471895 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-890 625 chr2R 14488978 14489001 chr2R 14489468 14489491 6 490 1.0 1.0 1.0 3.0 513 chr2R 14488978 intron L + chr2R 14489234 intron L + chr2R 14489491 intron L + chr2R_6_14485001 chr2R_14485001 RAL-890 626 chr2R 14497391 14497421 chr2R 14498556 14498583 1360 9 1165 2.5 5.5 4.0 1.8 1192 chr2R 14497391 3` UTR Cpsf160 - chr2R 14497987 intron Cpsf160 - chr2R 14498583 3` UTR Cpsf160 - chr2R_9_14495001 chr2R_14495001 RAL-890 627 chr2R 14530365 14530373 chr2R 14530454 14530462 5 89 5.0 2.5 3.8 1.0 97 chr2R 14530365 intron ttv + chr2R 14530414 intron ttv + chr2R 14530462 intron ttv + chr2R_5_14530001 chr2R_14530001 RAL-890 628 chr2R 14565556 14565592 chr2R 14565633 14565669 13 77 3.0 4.0 3.5 2.9 113 chr2R 14565556 intron ttv + chr2R 14565612 intron ttv + chr2R 14565669 intron ttv + chr2R_13_14565001 chr2R_14565001 RAL-890 629 chr2R 14566445 14566465 chr2R 14566532 14566552 8 87 4.5 2.5 3.5 1.8 107 chr2R 14566445 intron ttv + chr2R 14566498 intron ttv + chr2R 14566552 intron ttv + chr2R_8_14565001 chr2R_14565001 RAL-890 630 chr2R 14610254 14610279 chr2R 14610338 14610364 8 82 1.5 4.5 3.0 2.0 110 chr2R 14610254 exon Su(var)2-HP2 - chr2R 14610309 exon Su(var)2-HP2 - chr2R 14610364 exon Su(var)2-HP2 - chr2R_8_14610001 chr2R_14610001 RAL-890 631 chr2R 14623877 14623899 chr2R 14623973 14623995 4 96 0.5 4.5 2.5 1.1 118 chr2R 14623877 intron Uhg5 + chr2R 14623936 5` UTR Uhg5 + chr2R 14623995 intron Uhg5 + chr2R_4_14620001 chr2R_14620001 RAL-890 632 chr2R 14855037 14855053 chr2R 14855129 14855144 6 92 3.0 4.5 3.8 1.2 107 chr2R 14855037 5` UTR Ciao1 - chr2R 14855090 intergenic Ciao1 -,HPS1 + chr2R 14855144 intergenic Ciao1 -,HPS1 + chr2R_6_14855001 chr2R_14855001 RAL-890 633 chr2R 14889206 14889239 chr2R 14897814 14897844 Max-element 5 8607 5.5 0.0 2.8 1.3 8638 chr2R 14889206 intergenic Cyp6a8 - chr2R 14893525 intergenic not near genes chr2R 14897844 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-890 634 chr2R 14911701 14911726 chr2R 14911824 14911849 4 122 3.0 4.0 3.5 0.9 148 chr2R 14911701 intron CG10249 - chr2R 14911775 intron CG10249 - chr2R 14911849 intron CG10249 - chr2R_4_14910001 chr2R_14910001 RAL-890 635 chr2R 14917247 14917267 chr2R 14917337 14917357 9 90 3.0 1.5 2.2 2.8 110 chr2R 14917247 intron CG10249 - chr2R 14917302 intron CG10249 - chr2R 14917357 intron CG10249 - chr2R_9_14915001 chr2R_14915001 RAL-890 636 chr2R 14922142 14922169 chr2R 14922218 14922245 9 76 4.5 3.5 4.0 1.8 103 chr2R 14922142 intron CG10249 - chr2R 14922194 intron CG10249 - chr2R 14922245 intron CG10249 - chr2R_9_14920001 chr2R_14920001 RAL-890 637 chr2R 14934458 14934466 chr2R 14934546 14934554 4 88 1.5 0.0 0.8 2.2 96 chr2R 14934458 intron CG10253 - chr2R 14934506 intron CG10253 - chr2R 14934554 intron CG10253 - chr2R_4_14930001 chr2R_14930001 RAL-890 638 chr2R 14999936 14999958 chr2R 15000011 15000042 7 82 1.5 3.0 2.2 2.2 106 chr2R 14999936 intergenic not near genes chr2R 14999989 intergenic not near genes chr2R 15000042 intergenic not near genes chr2R_7_14995001 chr2R_14995001 RAL-890 639 chr2R 15004725 15004759 chr2R 15005054 15005088 jockey 17 329 0.5 2.0 1.2 7.7 363 chr2R 15004725 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005088 intergenic not near genes chr2R_17_15000001 chr2R_15000001 RAL-890 640 chr2R 15015464 15015487 chr2R 15022888 15022911 mdg1 8 7424 2.0 3.5 2.8 2.1 7447 chr2R 15015464 intron hbs + chr2R 15019188 intron hbs + chr2R 15022911 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-890 641 chr2R 15051084 15051109 chr2R 15051165 15051191 8 82 1.5 3.0 2.2 2.5 107 chr2R 15051084 intergenic not near genes chr2R 15051138 intergenic not near genes chr2R 15051191 intergenic not near genes chr2R_8_15050001 chr2R_15050001 RAL-890 642 chr2R 15084986 15085006 chr2R 15092035 15092039 297 4 7045 3.5 4.0 3.8 0.8 7053 chr2R 15084986 intergenic not near genes chr2R 15088512 intergenic not near genes chr2R 15092039 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-890 643 chr2R 15119334 15119349 chr2R 15127815 15127829 Tirant 4 8480 4.0 4.5 4.2 0.8 8495 chr2R 15119334 intron chn + chr2R 15123582 intron chn + chr2R 15127829 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-890 644 chr2R 15137970 15138002 chr2R 15138047 15138084 7 80 2.5 0.0 1.2 3.2 114 chr2R 15137970 intron chn + chr2R 15138027 intron chn + chr2R 15138084 intron chn + chr2R_7_15135001 chr2R_15135001 RAL-890 645 chr2R 15230386 15230392 chr2R 15231097 15231103 6 711 10.0 0.0 5.0 1.0 717 chr2R 15230386 intron,5` UTR Fs -,CR44370 + chr2R 15230744 intron,5` UTR Fs -,CR44370 + chr2R 15231103 intron,5` UTR Fs -,CR44370 + chr2R_6_15230001 chr2R_15230001 RAL-890 646 chr2R 15259064 15259090 chr2R 15259148 15259173 5 83 0.0 3.0 1.5 2.0 109 chr2R 15259064 intron ItgalphaPS4 + chr2R 15259118 intron ItgalphaPS4 + chr2R 15259173 intron ItgalphaPS4 + chr2R_5_15255001 chr2R_15255001 RAL-890 647 chr2R 15295709 15295742 chr2R 15295834 15295867 6 124 4.5 5.0 4.8 1.0 158 chr2R 15295709 intron Trpm - chr2R 15295788 intron Trpm - chr2R 15295867 intron Trpm - chr2R_6_15295001 chr2R_15295001 RAL-890 648 chr2R 15296160 15296167 chr2R 15296243 15296250 5 83 5.0 2.5 3.8 1.0 90 chr2R 15296160 intron Trpm - chr2R 15296205 intron Trpm - chr2R 15296250 intron Trpm - chr2R_5_15295001 chr2R_15295001 RAL-890 649 chr2R 15410784 15410796 chr2R 15410974 15410988 5 192 1.5 4.5 3.0 1.2 204 chr2R 15410784 intron CG43729 + chr2R 15410886 intron CG43729 + chr2R 15410988 intron CG43729 + chr2R_5_15410001 chr2R_15410001 RAL-890 650 chr2R 15445221 15445240 chr2R 15445347 15445366 6 126 0.5 3.0 1.8 2.1 145 chr2R 15445221 intron CG43729 + chr2R 15445294 intron CG43729 + chr2R 15445366 intron CG43729 + chr2R_6_15445001 chr2R_15445001 RAL-890 651 chr2R 15450995 15451013 chr2R 15451087 15451108 4 94 2.5 2.5 2.5 1.1 113 chr2R 15450995 intron CG43729 + chr2R 15451052 intron CG43729 + chr2R 15451108 intron CG43729 + chr2R_4_15450001 chr2R_15450001 RAL-890 652 chr2R 15472054 15472058 chr2R 15472138 15472142 4 84 0.0 5.0 2.5 1.1 88 chr2R 15472054 intergenic CG8180 -,CG43729 + chr2R 15472098 intergenic CG8180 -,CG43729 + chr2R 15472142 intergenic CG8180 -,CG43729 + chr2R_4_15470001 chr2R_15470001 RAL-890 653 chr2R 15534682 15534690 chr2R 15534760 15534769 4 78 3.0 1.5 2.2 1.2 87 chr2R 15534682 intron CG30471 + chr2R 15534726 intron CG30471 + chr2R 15534769 intron CG30471 + chr2R_4_15530001 chr2R_15530001 RAL-890 654 chr2R 15655981 15656009 chr2R 15656061 15656089 11 80 3.0 2.0 2.5 3.1 108 chr2R 15655981 intron CG42524 + chr2R 15656035 intron CG42524 + chr2R 15656089 intron CG42524 + chr2R_11_15655001 chr2R_15655001 RAL-890 655 chr2R 15679107 15679131 chr2R 15679191 15679215 10 84 4.0 2.0 3.0 2.5 108 chr2R 15679107 intergenic CG8207 -,Vha14-1 - chr2R 15679161 intergenic CG8207 -,Vha14-1 - chr2R 15679215 intergenic Vha14-1 -,CG8207 - chr2R_10_15675001 chr2R_15675001 RAL-890 656 chr2R 15700255 15700278 chr2R 15700350 15700373 5 95 1.5 1.5 1.5 2.0 118 chr2R 15700255 intron,5` UTR CG30080 -,CG42662 - chr2R 15700314 intron,5` UTR CG30080 -,CG42662 - chr2R 15700373 intron,5` UTR CG30080 -,CG42662 - chr2R_5_15700001 chr2R_15700001 RAL-890 657 chr2R 15828151 15828156 chr2R 15828311 15828315 5 160 0.0 0.5 0.2 4.2 164 chr2R 15828151 intron,intron tun +,Poxn - chr2R 15828233 intron,intron tun +,Poxn - chr2R 15828315 intron,intron tun +,Poxn - chr2R_5_15825001 chr2R_15825001 RAL-890 658 chr2R 15833520 15833559 chr2R 15833607 15833626 12 79 2.5 2.0 2.2 3.8 106 chr2R 15833520 intron,intron tun +,Poxn - chr2R 15833573 intron,intron tun +,Poxn - chr2R 15833626 intron,intron tun +,Poxn - chr2R_12_15830001 chr2R_15830001 RAL-890 659 chr2R 15951853 15951868 chr2R 15951929 15951941 4 75 1.5 3.5 2.5 1.1 88 chr2R 15951853 intron Strn-Mlck - chr2R 15951897 intron Strn-Mlck - chr2R 15951941 intron Strn-Mlck - chr2R_4_15950001 chr2R_15950001 RAL-890 660 chr2R 16113858 16113870 chr2R 16114360 16114366 4 500 3.0 0.0 1.5 1.6 508 chr2R 16113858 exon Asph + chr2R 16114112 exon Asph + chr2R 16114366 exon Asph + chr2R_4_16110001 chr2R_16110001 RAL-890 661 chr2R 16503875 16503903 chr2R 16503964 16503993 11 87 1.5 2.5 2.0 3.7 118 chr2R 16503875 intron Sema-2a + chr2R 16503934 intron Sema-2a + chr2R 16503993 intron Sema-2a + chr2R_11_16500001 chr2R_16500001 RAL-890 662 chr2R 16518045 16518066 chr2R 16518121 16518142 6 76 3.0 2.5 2.8 1.6 97 chr2R 16518045 intron Sema-2a + chr2R 16518094 intron Sema-2a + chr2R 16518142 intron Sema-2a + chr2R_6_16515001 chr2R_16515001 RAL-890 663 chr2R 16547014 16547029 chr2R 16547094 16547109 8 80 0.0 0.0 0.0 8.0 95 chr2R 16547014 intergenic not near genes chr2R 16547062 intergenic not near genes chr2R 16547109 intergenic not near genes chr2R_8_16545001 chr2R_16545001 RAL-890 664 chr2R 16617064 16617086 chr2R 16617143 16617165 12 79 3.5 4.5 4.0 2.4 101 chr2R 16617064 intron CG5065 + chr2R 16617114 intron CG5065 + chr2R 16617165 intron CG5065 + chr2R_12_16615001 chr2R_16615001 RAL-890 665 chr2R 16636901 16636932 chr2R 16637032 16637061 9 130 2.0 2.0 2.0 3.0 160 chr2R 16636901 intron Alk - chr2R 16636981 intron Alk - chr2R 16637061 intron Alk - chr2R_9_16635001 chr2R_16635001 RAL-890 666 chr2R 16708988 16709023 chr2R 16709084 16709095 14 94 2.0 2.0 2.0 4.7 107 chr2R 16708988 intron CG30463 - chr2R 16709042 intron CG30463 - chr2R 16709095 intron CG30463 - chr2R_14_16705001 chr2R_16705001 RAL-890 667 chr2R 16714555 16714571 chr2R 16714634 16714649 4 79 0.0 2.0 1.0 2.0 94 chr2R 16714555 intron CG30463 - chr2R 16714602 intron CG30463 - chr2R 16714649 intron CG30463 - chr2R_4_16710001 chr2R_16710001 RAL-890 668 chr2R 16775655 16775674 chr2R 16775922 16775941 6 265 2.0 3.0 2.5 1.7 286 chr2R 16775655 3` UTR Arp53D + chr2R 16775798 intergenic Arp53D + chr2R 16775941 intergenic Arp53D + chr2R_6_16775001 chr2R_16775001 RAL-890 669 chr2R 16904186 16904199 chr2R 16904473 16904476 4 286 1.5 1.5 1.5 1.6 290 chr2R 16904186 intergenic not near genes chr2R 16904331 intergenic not near genes chr2R 16904476 intergenic not near genes chr2R_4_16900001 chr2R_16900001 RAL-890 670 chr2R 16971516 16971518 chr2R 16971773 16971775 4 257 0.0 2.0 1.0 2.0 259 chr2R 16971516 5` UTR CR44377 + chr2R 16971646 5` UTR CR44377 + chr2R 16971775 intergenic CR44377 + chr2R_4_16970001 chr2R_16970001 RAL-890 671 chr2R 16975206 16975219 chr2R 16975283 16975296 5 76 3.0 3.0 3.0 1.2 90 chr2R 16975206 intron Cbp53E + chr2R 16975251 intron Cbp53E + chr2R 16975296 intron Cbp53E + chr2R_5_16975001 chr2R_16975001 RAL-890 672 chr2R 17139981 17140007 chr2R 17140237 17140263 11 256 3.0 2.5 2.8 2.9 282 chr2R 17139981 intergenic CG43103 -,CG11395 + chr2R 17140122 intergenic CG43103 -,CG43107 -,CR44386 + chr2R 17140263 intergenic CG43107 -,CR44386 +,CG43103 - chr2R_11_17140001 chr2R_17140001 RAL-890 673 chr2R 17147242 17147269 chr2R 17152273 17152300 jockey 6 5031 2.5 3.5 3.0 1.5 5058 chr2R 17147242 intergenic not near genes chr2R 17149771 intergenic not near genes chr2R 17152300 intergenic not near genes chr2R_6_17145001 chr2R_17145001 RAL-890 674 chr2R 17176358 17176387 chr2R 17182548 17182577 diver 7 6190 4.0 0.5 2.2 2.2 6219 chr2R 17176358 intergenic not near genes chr2R 17179468 intergenic not near genes chr2R 17182577 intergenic not near genes chr2R_7_17175001 chr2R_17175001 RAL-890 675 chr2R 17236510 17236533 chr2R 17241714 17241737 copia 7 5204 4.0 3.0 3.5 1.6 5227 chr2R 17236510 intron mbl + chr2R 17239124 intron mbl + chr2R 17241737 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-890 676 chr2R 17277236 17277243 chr2R 17277627 17277651 jockey 4 404 4.5 2.0 3.2 1.0 415 chr2R 17277236 intron mbl + chr2R 17277444 intron mbl + chr2R 17277651 intron mbl + chr2R_4_17275001 chr2R_17275001 RAL-890 677 chr2R 17485925 17485939 chr2R 17490687 17490701 F-element 8 4762 6.0 0.0 3.0 2.0 4776 chr2R 17485925 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488313 intron NT5E-2 + chr2R 17490701 intron NT5E-2 + chr2R_8_17485001 chr2R_17485001 RAL-890 678 chr2R 17709983 17710112 chr2R 17710074 17710190 11 85 0.5 0.5 0.5 7.3 207 chr2R 17709983 intron CG6424 - chr2R 17710086 intron CG6424 - chr2R 17710190 intron CG6424 - chr2R_11_17710001 chr2R_17710001 RAL-890 679 chr2R 17766853 17766876 chr2R 17766935 17766958 10 81 1.5 1.0 1.2 4.5 105 chr2R 17766853 intron OstDelta - chr2R 17766906 5` UTR OstDelta - chr2R 17766958 5` UTR,5` UTR OstDelta -,CR44416 + chr2R_10_17765001 chr2R_17765001 RAL-890 680 chr2R 17772473 17772494 chr2R 17772604 17772625 7 131 3.0 3.5 3.2 1.7 152 chr2R 17772473 exon CG6362 - chr2R 17772549 exon CG6362 - chr2R 17772625 intergenic CG6362 - chr2R_7_17770001 chr2R_17770001 RAL-890 681 chr2R 17782364 17782388 chr2R 17783567 17783591 pogo 6 1203 3.5 3.0 3.2 1.4 1227 chr2R 17782364 intergenic CG33981 -,fab1 - chr2R 17782978 intergenic not near genes chr2R 17783591 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-890 682 chr2R 17784027 17784057 chr2R 17784266 17784280 pogo 5 236 0.5 0.0 0.2 4.2 253 chr2R 17784027 intergenic mir-31a - chr2R 17784154 intergenic mir-31a - chr2R 17784280 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-890 683 chr2R 17846775 17846813 chr2R 17846859 17846885 16 83 2.5 2.5 2.5 4.6 110 chr2R 17846775 intron,5` UTR olf186-F +,olf186-M + chr2R 17846830 intron,5` UTR olf186-F +,olf186-M + chr2R 17846885 intron,5` UTR olf186-F +,olf186-M + chr2R_16_17845001 chr2R_17845001 RAL-890 684 chr2R 17918164 17918196 chr2R 17918241 17918272 6 76 3.5 2.0 2.8 1.6 108 chr2R 17918164 intron Elk + chr2R 17918218 intron Elk + chr2R 17918272 intron Elk + chr2R_6_17915001 chr2R_17915001 RAL-890 685 chr2R 18074604 18074616 chr2R 18074680 18074691 5 76 2.5 4.0 3.2 1.2 87 chr2R 18074604 intron CG34386 + chr2R 18074648 intron CG34386 + chr2R 18074691 intron CG34386 + chr2R_5_18070001 chr2R_18070001 RAL-890 686 chr2R 18075973 18075996 chr2R 18076067 18076090 7 94 3.5 3.5 3.5 1.6 117 chr2R 18075973 intron CG34386 + chr2R 18076032 intron CG34386 + chr2R 18076090 intron CG34386 + chr2R_7_18075001 chr2R_18075001 RAL-890 687 chr2R 18187459 18187486 chr2R 18187922 18187950 5 464 1.0 1.5 1.2 2.3 491 chr2R 18187459 intron CG33958 - chr2R 18187704 intron CG33958 - chr2R 18187950 intron,exon CG33958 -,CG14499 + chr2R_5_18185001 chr2R_18185001 RAL-890 688 chr2R 18358391 18358423 chr2R 18372603 18372635 roo 8 14212 3.0 4.5 3.8 1.7 14244 chr2R 18358391 intergenic not near genes chr2R 18365513 intergenic not near genes chr2R 18372635 intergenic not near genes chr2R_8_18365001 chr2R_18365001 RAL-890 689 chr2R 18402500 18402532 chr2R 18402588 18402619 6 88 4.0 1.0 2.5 1.7 119 chr2R 18402500 intergenic not near genes chr2R 18402560 intergenic not near genes chr2R 18402619 intergenic not near genes chr2R_6_18400001 chr2R_18400001 RAL-890 690 chr2R 18408280 18408314 chr2R 18408401 18408435 7 121 4.5 4.5 4.5 1.3 155 chr2R 18408280 exon GstE8 + chr2R 18408358 exon GstE8 + chr2R 18408435 exon GstE8 + chr2R_7_18405001 chr2R_18405001 RAL-890 691 chr2R 18526681 18526694 chr2R 18526881 18526894 4 200 1.0 0.0 0.5 2.7 213 chr2R 18526681 intergenic CG43066 + chr2R 18526788 intergenic CG43066 + chr2R 18526894 intergenic CG43066 + chr2R_4_18525001 chr2R_18525001 RAL-890 692 chr2R 18590868 18590899 chr2R 18600019 18600051 roo 7 9151 1.5 1.5 1.5 2.8 9183 chr2R 18590868 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600051 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-890 693 chr2R 18662359 18662378 chr2R 18662442 18662461 8 83 2.5 0.0 1.2 3.6 102 chr2R 18662359 intergenic not near genes chr2R 18662410 intergenic not near genes chr2R 18662461 intergenic not near genes chr2R_8_18660001 chr2R_18660001 RAL-890 694 chr2R 18692903 18692921 chr2R 18692990 18693008 8 87 2.0 3.0 2.5 2.3 105 chr2R 18692903 intron Sik3 + chr2R 18692956 intron Sik3 + chr2R 18693008 intron Sik3 + chr2R_8_18690001 chr2R_18690001 RAL-890 695 chr2R 18713235 18713273 chr2R 18713312 18713350 21 77 2.5 4.5 3.5 4.7 115 chr2R 18713235 intergenic not near genes chr2R 18713292 intergenic not near genes chr2R 18713350 intergenic not near genes chr2R_21_18710001 chr2R_18710001 RAL-890 696 chr2R 18738216 18738234 chr2R 18738292 18738310 8 76 1.5 2.5 2.0 2.7 94 chr2R 18738216 intron Hs3st-A + chr2R 18738263 intron Hs3st-A + chr2R 18738310 intron Hs3st-A + chr2R_8_18735001 chr2R_18735001 RAL-890 697 chr2R 18808063 18808086 chr2R 18808152 18808175 12 89 0.0 0.5 0.2 10.0 112 chr2R 18808063 intergenic CG15096 - chr2R 18808119 intergenic CG15096 - chr2R 18808175 intergenic CG15096 - chr2R_12_18805001 chr2R_18805001 RAL-890 698 chr2R 18862308 18862319 chr2R 18862395 18862406 7 87 1.0 0.0 0.5 4.7 98 chr2R 18862308 intergenic Jheh3 - chr2R 18862357 intergenic Jheh3 - chr2R 18862406 intergenic Jheh3 -,CG43069 + chr2R_7_18860001 chr2R_18860001 RAL-890 699 chr2R 18926506 18926529 chr2R 18926593 18926616 8 87 1.5 3.0 2.2 2.5 110 chr2R 18926506 intron sano + chr2R 18926561 intron sano + chr2R 18926616 intron sano + chr2R_8_18925001 chr2R_18925001 RAL-890 700 chr2R 18930457 18930482 chr2R 18930550 18930575 5 93 1.5 4.0 2.8 1.3 118 chr2R 18930457 intron sano + chr2R 18930516 intron sano + chr2R 18930575 intron sano + chr2R_5_18930001 chr2R_18930001 RAL-890 701 chr2R 18989017 18989044 chr2R 18989095 18989122 8 78 1.5 1.5 1.5 3.2 105 chr2R 18989017 intron tn + chr2R 18989070 intron tn + chr2R 18989122 intron tn + chr2R_8_18985001 chr2R_18985001 RAL-890 702 chr2R 19067729 19067754 chr2R 19067805 19067830 6 76 2.5 3.5 3.0 1.5 101 chr2R 19067729 intron 5-HT1A + chr2R 19067780 intron 5-HT1A + chr2R 19067830 intron 5-HT1A + chr2R_6_19065001 chr2R_19065001 RAL-890 703 chr2R 19168744 19168749 chr2R 19168825 19168830 4 81 6.0 2.5 4.2 0.8 86 chr2R 19168744 intron CG10737 + chr2R 19168787 intron CG10737 + chr2R 19168830 intron CG10737 + chr2R_4_19165001 chr2R_19165001 RAL-890 704 chr2R 19234837 19234865 chr2R 19234919 19234947 7 82 3.0 3.0 3.0 1.8 110 chr2R 19234837 intron cora + chr2R 19234892 intron cora + chr2R 19234947 intron cora + chr2R_7_19230001 chr2R_19230001 RAL-890 705 chr2R 19334654 19334665 chr2R 19334730 19334741 7 76 4.5 1.0 2.8 1.8 87 chr2R 19334654 intron,intron Rgk1 -,CG34045 + chr2R 19334698 intron,intron Rgk1 -,CG34045 + chr2R 19334741 intron,exon Rgk1 -,CG34045 + chr2R_7_19330001 chr2R_19330001 RAL-890 706 chr2R 19376138 19376146 chr2R 19376331 19376339 5 192 0.0 6.0 3.0 1.2 201 chr2R 19376138 intron CG10062 + chr2R 19376238 intron CG10062 + chr2R 19376339 intron CG10062 + chr2R_5_19375001 chr2R_19375001 RAL-890 707 chr2R 19385280 19385313 chr2R 19385563 19385596 17 283 1.0 2.5 1.8 6.1 316 chr2R 19385280 intergenic CG10073 + chr2R 19385438 intergenic CG10073 +,CG10081 + chr2R 19385596 intergenic CG10081 + chr2R_17_19385001 chr2R_19385001 RAL-890 708 chr2R 19536467 19536497 chr2R 19536549 19536579 10 82 4.5 3.5 4.0 2.0 112 chr2R 19536467 intron sm - chr2R 19536523 intron sm - chr2R 19536579 intron sm - chr2R_10_19535001 chr2R_19535001 RAL-890 709 chr2R 19555581 19555611 chr2R 19555665 19555695 9 83 0.0 2.0 1.0 4.5 114 chr2R 19555581 intron sm - chr2R 19555638 intron sm - chr2R 19555695 intron sm - chr2R_9_19555001 chr2R_19555001 RAL-890 710 chr2R 19714705 19714733 chr2R 19714781 19714809 15 76 0.0 3.0 1.5 6.0 104 chr2R 19714705 3` UTR CG8517 + chr2R 19714757 3` UTR CG8517 + chr2R 19714809 3` UTR CG8517 + chr2R_15_19710001 chr2R_19710001 RAL-890 711 chr2R 19774019 19774033 chr2R 19774132 19774146 4 112 5.0 2.0 3.5 0.9 127 chr2R 19774019 intergenic not near genes chr2R 19774082 intergenic not near genes chr2R 19774146 intergenic not near genes chr2R_4_19770001 chr2R_19770001 RAL-890 712 chr2R 19776597 19776627 chr2R 19779919 19779950 jockey 9 3323 1.5 7.5 4.5 1.6 3353 chr2R 19776597 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779950 intergenic not near genes chr2R_9_19775001 chr2R_19775001 RAL-890 713 chr2R 19914845 19914864 chr2R 19922257 19922276 mdg1 9 7412 4.0 1.0 2.5 2.6 7431 chr2R 19914845 intergenic not near genes chr2R 19918560 intergenic not near genes chr2R 19922276 intergenic not near genes chr2R_9_19915001 chr2R_19915001 RAL-890 714 chr2R 19943270 19943289 chr2R 19943380 19943399 6 110 1.0 2.0 1.5 2.4 129 chr2R 19943270 intergenic not near genes chr2R 19943334 intergenic not near genes chr2R 19943399 intergenic not near genes chr2R_6_19940001 chr2R_19940001 RAL-890 715 chr2R 19957444 19957454 chr2R 19962646 19962656 copia 4 5202 1.5 6.0 3.8 0.8 5212 chr2R 19957444 intergenic CG44623 + chr2R 19960050 intergenic not near genes chr2R 19962656 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-890 716 chr2R 20080607 20080624 chr2R 20080684 20080701 4 76 0.0 4.5 2.2 1.2 94 chr2R 20080607 intergenic not near genes chr2R 20080654 intergenic not near genes chr2R 20080701 intergenic not near genes chr2R_4_20080001 chr2R_20080001 RAL-890 717 chr2R 20395021 20395057 chr2R 20395193 20395233 5 166 4.5 0.0 2.2 1.6 212 chr2R 20395021 intergenic not near genes chr2R 20395127 intergenic not near genes chr2R 20395233 intergenic not near genes chr2R_5_20395001 chr2R_20395001 RAL-890 718 chr2R 20483913 20483943 chr2R 20484286 20484316 8 373 2.0 3.0 2.5 2.3 403 chr2R 20483913 intergenic not near genes chr2R 20484114 intergenic not near genes chr2R 20484316 intergenic not near genes chr2R_8_20480001 chr2R_20480001 RAL-890 719 chr2R 20510344 20510362 chr2R 20510668 20510686 9 324 4.0 7.5 5.8 1.3 342 chr2R 20510344 intergenic not near genes chr2R 20510515 intergenic not near genes chr2R 20510686 intergenic CR44648 + chr2R_9_20510001 chr2R_20510001 RAL-890 720 chr2R 20515433 20515444 chr2R 20515676 20515688 7 243 2.5 2.0 2.2 2.2 255 chr2R 20515433 intergenic not near genes chr2R 20515560 intergenic not near genes chr2R 20515688 intergenic not near genes chr2R_7_20515001 chr2R_20515001 RAL-890 721 chr2R 20523049 20523062 chr2R 20523150 20523169 6 106 1.0 1.0 1.0 3.0 120 chr2R 20523049 intergenic not near genes chr2R 20523109 intergenic not near genes chr2R 20523169 intergenic not near genes chr2R_6_20520001 chr2R_20520001 RAL-890 722 chr2R 20700050 20700082 chr2R 20700134 20700151 9 81 2.5 3.5 3.0 2.2 101 chr2R 20700050 intron dpr + chr2R 20700100 intron dpr + chr2R 20700151 intron dpr + chr2R_9_20700001 chr2R_20700001 RAL-890 723 chr2R 20772283 20772308 chr2R 20772366 20772391 7 83 3.5 3.0 3.2 1.7 108 chr2R 20772283 intergenic not near genes chr2R 20772337 intergenic not near genes chr2R 20772391 intergenic not near genes chr2R_7_20770001 chr2R_20770001 RAL-890 724 chr2R 20783311 20783327 chr2R 20788083 20788099 F-element 5 4771 3.5 2.0 2.8 1.3 4788 chr2R 20783311 intergenic not near genes chr2R 20785705 intergenic not near genes chr2R 20788099 intergenic CG43666 - chr2R_5_20785001 chr2R_20785001 RAL-890 725 chr2R 20862330 20862347 chr2R 20862424 20862441 7 92 3.0 7.0 5.0 1.2 111 chr2R 20862330 intergenic not near genes chr2R 20862386 intergenic not near genes chr2R 20862441 intergenic not near genes chr2R_7_20860001 chr2R_20860001 RAL-890 726 chr2R 20863117 20863139 chr2R 20863203 20863225 12 86 3.5 2.5 3.0 3.0 108 chr2R 20863117 intergenic not near genes chr2R 20863171 intergenic not near genes chr2R 20863225 intergenic not near genes chr2R_12_20860001 chr2R_20860001 RAL-890 727 chr2R 21129769 21129790 chr2R 21129846 21129863 8 76 3.5 2.5 3.0 2.0 94 chr2R 21129769 3` UTR Magi - chr2R 21129816 3` UTR Magi - chr2R 21129863 3` UTR Magi - chr2R_8_21125001 chr2R_21125001 RAL-890 728 chr2R 21141119 21141151 chr2R 21141215 21141247 12 96 0.0 3.0 1.5 4.8 128 chr2R 21141119 intron Magi - chr2R 21141183 intron Magi - chr2R 21141247 intron Magi - chr2R_12_21140001 chr2R_21140001 RAL-890 729 chr2R 21194011 21194030 chr2R 21194096 21194115 6 85 1.0 5.0 3.0 1.5 104 chr2R 21194011 intron Lapsyn + chr2R 21194063 intron Lapsyn + chr2R 21194115 intron Lapsyn + chr2R_6_21190001 chr2R_21190001 RAL-890 730 chr2R 21201410 21201442 chr2R 21201554 21201586 8 138 4.0 3.5 3.8 1.7 176 chr2R 21201410 intron,intron CG44245 +,Glycogenin + chr2R 21201498 intron,intron CG44245 +,Glycogenin + chr2R 21201586 intron,intron CG44245 +,Glycogenin + chr2R_8_21200001 chr2R_21200001 RAL-890 731 chr2R 21217323 21217333 chr2R 21217410 21217420 5 87 0.0 0.0 0.0 5.0 97 chr2R 21217323 exon CG15661 - chr2R 21217372 5` UTR CG15661 - chr2R 21217420 5` UTR CG15661 - chr2R_5_21215001 chr2R_21215001 RAL-890 732 chr2R 21447113 21447118 chr2R 21447218 21447223 5 105 0.0 0.0 0.0 5.0 110 chr2R 21447113 intron Sdc - chr2R 21447168 intron Sdc - chr2R 21447223 intron Sdc - chr2R_5_21445001 chr2R_21445001 RAL-890 733 chr2R 21472319 21472334 chr2R 21472397 21472412 8 78 3.0 3.5 3.2 1.9 93 chr2R 21472319 intron Sdc - chr2R 21472366 intron Sdc - chr2R 21472412 intron Sdc - chr2R_8_21470001 chr2R_21470001 RAL-890 734 chr2R 21486680 21486704 chr2R 21486777 21486801 4 97 4.0 2.5 3.2 1.0 121 chr2R 21486680 exon Sara + chr2R 21486740 3` UTR Sara + chr2R 21486801 3` UTR Sara + chr2R_4_21485001 chr2R_21485001 RAL-890 735 chr2R 21656999 21657023 chr2R 21657230 21657254 10 230 9.0 21.5 15.2 0.6 255 chr2R 21656999 exon,3` UTR CG10082 +,CR43786 - chr2R 21657126 3` UTR,3` UTR CG10082 +,CR43786 - chr2R 21657254 3` UTR CG10082 + chr2R_10_21655001 chr2R_21655001 RAL-890 736 chr2R 21700163 21700180 chr2R 21700249 21700261 7 85 2.5 4.5 3.5 1.6 98 chr2R 21700163 intron HmgZ - chr2R 21700212 intron HmgZ - chr2R 21700261 intron HmgZ - chr2R_7_21700001 chr2R_21700001 RAL-890 737 chr2R 21906275 21906296 chr2R 21906376 21906397 5 101 4.5 2.5 3.5 1.1 122 chr2R 21906275 intron Fili + chr2R 21906336 intron Fili + chr2R 21906397 intron Fili + chr2R_5_21905001 chr2R_21905001 RAL-890 738 chr2R 21912747 21912772 chr2R 21912828 21912852 7 81 2.5 0.5 1.5 2.8 105 chr2R 21912747 intron Fili + chr2R 21912800 intron Fili + chr2R 21912852 intron Fili + chr2R_7_21910001 chr2R_21910001 RAL-890 739 chr2R 22003093 22003116 chr2R 22003179 22003202 9 82 3.5 1.0 2.2 2.8 109 chr2R 22003093 intron CG34370 - chr2R 22003148 intron CG34370 - chr2R 22003202 intron CG34370 - chr2R_9_22000001 chr2R_22000001 RAL-890 740 chr2R 22182913 22182937 chr2R 22182997 22183021 7 84 1.0 2.0 1.5 2.8 108 chr2R 22182913 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22182967 intergenic CG11170 -,MED16 +,CG11275 + chr2R 22183021 intergenic MED16 +,CG11170 -,CG11275 + chr2R_7_22180001 chr2R_22180001 RAL-890 741 chr2R 22185673 22185708 chr2R 22185772 22185806 9 99 1.5 0.5 1.0 4.5 133 chr2R 22185673 3` UTR MED16 + chr2R 22185740 3` UTR MED16 + chr2R 22185806 3` UTR MED16 + chr2R_9_22185001 chr2R_22185001 RAL-890 742 chr2R 22199901 22199939 chr2R 22199984 22200022 11 82 2.0 1.5 1.8 3.9 121 chr2R 22199901 intron Swim - chr2R 22199962 intron Swim - chr2R 22200022 intron Swim - chr2R_11_22195001 chr2R_22195001 RAL-890 743 chr2R 22208343 22208372 chr2R 22208666 22208694 14 324 3.0 3.0 3.0 3.5 351 chr2R 22208343 intergenic CG3264 -,CG3290 - chr2R 22208518 3` UTR CG3264 - chr2R 22208694 3` UTR CG3264 - chr2R_14_22205001 chr2R_22205001 RAL-890 744 chr2R 22349697 22349723 chr2R 22351481 22351507 jockey 6 1783 3.0 4.5 3.8 1.2 1810 chr2R 22349697 intron Liprin-gamma - chr2R 22350602 intron Liprin-gamma - chr2R 22351507 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-890 745 chr2R 22360384 22360399 chr2R 22360817 22360827 jockey 6 432 5.0 3.0 4.0 1.2 443 chr2R 22360384 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360827 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 RAL-890 746 chr2R 22380365 22380394 chr2R 22380455 22380479 8 90 0.0 0.0 0.0 8.0 114 chr2R 22380365 intron wrapper + chr2R 22380422 intron wrapper + chr2R 22380479 intron wrapper + chr2R_8_22380001 chr2R_22380001 RAL-890 747 chr2R 22471693 22471727 chr2R 22471770 22471804 9 77 3.5 3.0 3.2 2.1 111 chr2R 22471693 3` UTR CG10384 + chr2R 22471748 3` UTR CG10384 + chr2R 22471804 3` UTR CG10384 + chr2R_9_22470001 chr2R_22470001 RAL-890 748 chr2R 22525752 22525779 chr2R 22529307 22529334 jockey 9 3553 2.0 4.5 3.2 2.1 3582 chr2R 22525752 intron px - chr2R 22527543 intron px - chr2R 22529334 intron px - chr2R_9_22525001 chr2R_22525001 RAL-890 749 chr2R 22545630 22545653 chr2R 22545709 22545732 7 79 1.5 4.5 3.0 1.8 102 chr2R 22545630 intron px - chr2R 22545681 intron px - chr2R 22545732 intron px - chr2R_7_22545001 chr2R_22545001 RAL-890 750 chr2R 22646472 22646476 chr2R 22646563 22646568 4 92 2.5 0.0 1.2 1.8 96 chr2R 22646472 intergenic CG2852 -,CG30195 - chr2R 22646520 intergenic CG30195 -,CG2852 - chr2R 22646568 intergenic CG30195 -,CG2852 - chr2R_4_22645001 chr2R_22645001 RAL-890 751 chr2R 22654399 22654402 chr2R 22654464 22654483 6 78 1.0 6.0 3.5 1.3 84 chr2R 22654399 exon Cyp6d2 - chr2R 22654441 5` UTR Cyp6d2 - chr2R 22654483 5` UTR Cyp6d2 - chr2R_6_22650001 chr2R_22650001 RAL-890 752 chr2R 22723233 22723263 chr2R 22723309 22723339 5 76 3.5 4.5 4.0 1.0 106 chr2R 22723233 intron jbug - chr2R 22723286 intron jbug - chr2R 22723339 intron jbug - chr2R_5_22720001 chr2R_22720001 RAL-890 753 chr2R 22774966 22774997 chr2R 22775385 22775416 jockey 16 418 4.0 4.5 4.2 3.1 450 chr2R 22774966 intron CG42260 - chr2R 22775191 intron CG42260 - chr2R 22775416 intron CG42260 - chr2R_16_22775001 chr2R_22775001 RAL-890 754 chr2R 22839492 22839509 chr2R 22839571 22839588 9 79 6.5 0.0 3.2 2.1 96 chr2R 22839492 intergenic CG9825 + chr2R 22839540 intergenic CG9825 + chr2R 22839588 intergenic CG9825 + chr2R_9_22835001 chr2R_22835001 RAL-890 755 chr2R 22860778 22860800 chr2R 22860869 22860890 4 90 5.0 2.5 3.8 0.8 112 chr2R 22860778 intergenic not near genes chr2R 22860834 intergenic not near genes chr2R 22860890 intergenic not near genes chr2R_4_22860001 chr2R_22860001 RAL-890 756 chr2R 22868253 22868286 chr2R 22868366 22868399 10 112 4.5 2.5 3.5 2.2 146 chr2R 22868253 5` UTR fd59A + chr2R 22868326 5` UTR fd59A + chr2R 22868399 5` UTR fd59A + chr2R_10_22865001 chr2R_22865001 RAL-890 757 chr2R 23052652 23052687 chr2R 23052728 23052763 12 76 1.5 4.5 3.0 3.0 111 chr2R 23052652 intergenic not near genes chr2R 23052708 intergenic not near genes chr2R 23052763 intergenic not near genes chr2R_12_23050001 chr2R_23050001 RAL-890 758 chr2R 23061772 23061782 chr2R 23061866 23061874 6 93 3.5 3.0 3.2 1.4 102 chr2R 23061772 3` UTR l(2)06496 - chr2R 23061823 3` UTR l(2)06496 - chr2R 23061874 3` UTR l(2)06496 - chr2R_6_23060001 chr2R_23060001 RAL-890 759 chr2R 23175042 23175068 chr2R 23175119 23175145 9 72 3.5 2.0 2.8 2.4 103 chr2R 23175042 intron CG34371 - chr2R 23175094 intron CG34371 - chr2R 23175145 intron CG34371 - chr2R_9_23175001 chr2R_23175001 RAL-890 760 chr2R 23186570 23186600 chr2R 23186648 23186678 15 77 1.5 5.5 3.5 3.3 108 chr2R 23186570 intron CG34371 - chr2R 23186624 intron CG34371 - chr2R 23186678 intron CG34371 - chr2R_15_23185001 chr2R_23185001 RAL-890 761 chr2R 23402615 23402632 chr2R 23407691 23407706 flea 7 5075 3.5 4.5 4.0 1.4 5091 chr2R 23402615 intergenic CG3520 - chr2R 23405160 intergenic not near genes chr2R 23407706 intergenic not near genes chr2R_7_23405001 chr2R_23405001 RAL-890 762 chr2R 23423740 23423774 chr2R 23423898 23423919 15 156 1.5 2.0 1.8 5.4 179 chr2R 23423740 intron CG9815 - chr2R 23423830 intron CG9815 - chr2R 23423919 intron CG9815 - chr2R_15_23420001 chr2R_23420001 RAL-890 763 chr2R 23487448 23487476 chr2R 23487530 23487558 12 82 3.0 4.0 3.5 2.7 110 chr2R 23487448 intron CG43795 + chr2R 23487503 intron CG43795 + chr2R 23487558 intron CG43795 + chr2R_12_23485001 chr2R_23485001 RAL-890 764 chr2R 23518197 23518221 chr2R 23518274 23518299 9 78 1.5 2.5 2.0 3.0 102 chr2R 23518197 intergenic not near genes chr2R 23518248 intergenic not near genes chr2R 23518299 intergenic not near genes chr2R_9_23515001 chr2R_23515001 RAL-890 765 chr2R 23607035 23607191 chr2R 23607116 23607284 19 82 4.0 6.5 5.2 3.1 249 chr2R 23607035 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607284 intron CG17664 - chr2R_19_23605001 chr2R_23605001 RAL-890 766 chr2R 23758327 23758356 chr2R 23758403 23758432 12 76 1.0 0.5 0.8 6.7 105 chr2R 23758327 intron CG9850 - chr2R 23758380 intron CG9850 - chr2R 23758432 intron CG9850 - chr2R_12_23755001 chr2R_23755001 RAL-890 767 chr2R 23914306 23914332 chr2R 23921930 23921956 412 6 7624 3.0 2.0 2.5 1.7 7650 chr2R 23914306 exon kcc + chr2R 23918131 intron kcc + chr2R 23921956 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-890 768 chr2R 23986513 23986541 chr2R 23986593 23986619 6 80 3.0 3.5 3.2 1.4 106 chr2R 23986513 intron Phm - chr2R 23986566 intron Phm - chr2R 23986619 intron,5` UTR Phm -,CG30178 + chr2R_6_23985001 chr2R_23985001 RAL-890 769 chr2R 24031381 24031414 chr2R 24031465 24031498 18 84 1.5 8.5 5.0 3.0 117 chr2R 24031381 5` UTR CG30172 - chr2R 24031440 intergenic CG30172 -,Chi - chr2R 24031498 intergenic Chi -,CG30172 - chr2R_18_24030001 chr2R_24030001 RAL-890 770 chr2R 24177236 24177267 chr2R 24184721 24184752 412 14 7485 3.5 4.0 3.8 2.9 7516 chr2R 24177236 3` UTR Nop60B + chr2R 24180994 intron Nop60B + chr2R 24184752 3` UTR Nop60B + chr2R_14_24180001 chr2R_24180001 RAL-890 771 chr2R 24287136 24287165 chr2R 24287213 24287242 14 77 4.5 4.0 4.2 2.7 106 chr2R 24287136 intron nvy + chr2R 24287189 intron nvy + chr2R 24287242 intron nvy + chr2R_14_24285001 chr2R_24285001 RAL-890 772 chr2R 24353427 24353456 chr2R 24361789 24361816 roo 13 8362 4.5 4.5 4.5 2.4 8389 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357622 intron,intron bs +,CR44811 - chr2R 24361816 intron,intron bs +,CR44811 - chr2R_13_24355001 chr2R_24355001 RAL-890 773 chr2R 24366249 24366274 chr2R 24366336 24366361 8 86 3.0 2.5 2.8 2.1 112 chr2R 24366249 intron,intron bs +,CR44811 - chr2R 24366305 intron,intron bs +,CR44811 - chr2R 24366361 intron,intron bs +,CR44811 - chr2R_8_24365001 chr2R_24365001 RAL-890 774 chr2R 24430817 24430839 chr2R 24430898 24430920 5 81 3.0 6.0 4.5 0.9 103 chr2R 24430817 intergenic CG15873 - chr2R 24430868 intergenic CG15873 -,Pgam5-2 - chr2R 24430920 intergenic CG15873 -,Pgam5-2 - chr2R_5_24430001 chr2R_24430001 RAL-890 775 chr2R 24647592 24647617 chr2R 24655146 24655174 412 7 7556 4.0 4.0 4.0 1.4 7582 chr2R 24647592 intergenic not near genes chr2R 24651383 intergenic not near genes chr2R 24655174 intergenic not near genes chr2R_7_24650001 chr2R_24650001 RAL-890 776 chr2R 24727886 24727918 chr2R 24735390 24735426 mdg1 4 7505 1.5 2.5 2.0 1.3 7540 chr2R 24727886 intron Mid1 - chr2R 24731656 intron Mid1 - chr2R 24735426 intron Mid1 - chr2R_4_24730001 chr2R_24730001 RAL-890 777 chr2R 24750544 24750570 chr2R 24750624 24750652 9 81 1.5 4.5 3.0 2.2 108 chr2R 24750544 intron CG30421 + chr2R 24750598 intron CG30421 + chr2R 24750652 intron CG30421 + chr2R_9_24750001 chr2R_24750001 RAL-890 778 chr2R 24822772 24822799 chr2R 24822854 24822881 5 81 3.0 0.5 1.8 1.8 109 chr2R 24822772 intron Dll + chr2R 24822826 intron Dll + chr2R 24822881 intron Dll + chr2R_5_24820001 chr2R_24820001 RAL-890 779 chr2R 24859850 24859871 chr2R 24859936 24859956 4 86 0.5 2.5 1.5 1.6 106 chr2R 24859850 5` UTR CR44829 + chr2R 24859903 5` UTR CR44829 + chr2R 24859956 5` UTR CR44829 + chr2R_4_24855001 chr2R_24855001 RAL-890 780 chr2R 24884052 24884079 chr2R 24884134 24884161 7 82 4.5 3.0 3.8 1.5 109 chr2R 24884052 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884161 intron NKAIN + chr2R_7_24880001 chr2R_24880001 RAL-890 781 chr2R 25101276 25101308 chr2R 25101378 25101410 9 102 2.5 2.5 2.5 2.6 134 chr2R 25101276 intron lov - chr2R 25101343 intron lov - chr2R 25101410 intron lov - chr2R_9_25100001 chr2R_25100001 RAL-890 782 chr2R 25141653 25141682 chr2R 25159343 25159368 roo 10 17690 4.5 4.5 4.5 1.8 17715 chr2R 25141653 intergenic not near genes chr2R 25150510 intergenic not near genes chr2R 25159368 intergenic not near genes chr2R_10_25150001 chr2R_25150001 RAL-890 783 chr2R 25180765 25180783 chr2R 25180842 25180860 4 77 3.0 3.5 3.2 1.0 95 chr2R 25180765 intergenic not near genes chr2R 25180812 intergenic not near genes chr2R 25180860 intergenic not near genes chr2R_4_25180001 chr2R_25180001 RAL-890 784 chr3L 68979 69015 chr3L 69066 69102 11 86 4.0 1.0 2.5 3.1 123 chr3L 68979 3` UTR Lsp1gamma + chr3L 69040 intergenic Lsp1gamma +,CR44510 + chr3L 69102 intergenic CR44510 +,Lsp1gamma + chr3L_11_65001 chr3L_65001 RAL-890 785 chr3L 93788 93822 chr3L 93869 93896 4 75 1.5 1.0 1.2 1.8 108 chr3L 93788 intergenic not near genes chr3L 93842 intergenic not near genes chr3L 93896 intergenic not near genes chr3L_4_90001 chr3L_90001 RAL-890 786 chr3L 106002 106008 chr3L 106131 106136 4 128 4.0 6.0 5.0 0.7 134 chr3L 106002 intergenic not near genes chr3L 106069 intergenic not near genes chr3L 106136 intergenic not near genes chr3L_4_105001 chr3L_105001 RAL-890 787 chr3L 106010 106026 chr3L 106130 106155 7 128 2.0 5.5 3.8 1.5 145 chr3L 106010 intergenic not near genes chr3L 106082 intergenic not near genes chr3L 106155 intergenic not near genes chr3L_7_105001 chr3L_105001 RAL-890 788 chr3L 110215 110242 chr3L 119381 119408 roo 12 9167 5.5 3.0 4.2 2.3 9193 chr3L 110215 intergenic not near genes chr3L 114812 intergenic not near genes chr3L 119408 intergenic not near genes chr3L_12_110001 chr3L_110001 RAL-890 789 chr3L 119429 119439 chr3L 120590 120600 6 1160 5.5 4.0 4.8 1.0 1171 chr3L 119429 intergenic not near genes chr3L 120014 intergenic not near genes chr3L 120600 intergenic not near genes chr3L_6_120001 chr3L_120001 RAL-890 790 chr3L 119440 119460 chr3L 120586 120621 10 1158 3.0 3.0 3.0 2.5 1181 chr3L 119440 intergenic not near genes chr3L 120030 intergenic not near genes chr3L 120621 intergenic not near genes chr3L_10_120001 chr3L_120001 RAL-890 791 chr3L 338808 338841 chr3L 338902 338935 8 94 2.0 2.0 2.0 2.7 127 chr3L 338808 intron,intron Ptpmeg +,mthl10 - chr3L 338872 intron,intron Ptpmeg +,mthl10 - chr3L 338935 intron,intron Ptpmeg +,mthl10 - chr3L_8_335001 chr3L_335001 RAL-890 792 chr3L 391922 391936 chr3L 392015 392029 8 93 0.0 3.5 1.8 2.9 107 chr3L 391922 intron trh - chr3L 391976 intron trh - chr3L 392029 intron,3` UTR trh -,CR45378 - chr3L_8_390001 chr3L_390001 RAL-890 793 chr3L 402687 402718 chr3L 409740 409770 297 6 7053 2.5 3.5 3.0 1.5 7083 chr3L 402687 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409770 intergenic not near genes chr3L_6_405001 chr3L_405001 RAL-890 794 chr3L 456213 456228 chr3L 456287 456307 7 78 5.5 3.0 4.2 1.3 94 chr3L 456213 intron klar - chr3L 456260 intron klar - chr3L 456307 intron klar - chr3L_7_455001 chr3L_455001 RAL-890 795 chr3L 459991 460009 chr3L 460068 460086 7 77 4.5 4.0 4.2 1.3 95 chr3L 459991 intron klar - chr3L 460038 intron klar - chr3L 460086 intron klar - chr3L_7_460001 chr3L_460001 RAL-890 796 chr3L 494597 494622 chr3L 494679 494704 4 82 2.5 0.0 1.2 1.8 107 chr3L 494597 intron klar - chr3L 494650 intron klar - chr3L 494704 intron klar - chr3L_4_490001 chr3L_490001 RAL-890 797 chr3L 502782 502805 chr3L 502865 502888 7 82 5.5 2.0 3.8 1.5 106 chr3L 502782 intron klar - chr3L 502835 intron klar - chr3L 502888 intron klar - chr3L_7_500001 chr3L_500001 RAL-890 798 chr3L 514277 514305 chr3L 514354 514382 11 77 2.0 6.0 4.0 2.2 105 chr3L 514277 intron klar - chr3L 514330 intron klar - chr3L 514382 intron klar - chr3L_11_510001 chr3L_510001 RAL-890 799 chr3L 540723 540748 chr3L 540817 540841 7 94 2.5 5.0 3.8 1.5 118 chr3L 540723 intergenic klar -,CG17180 + chr3L 540782 intergenic CG17180 +,klar - chr3L 540841 intergenic CG17180 +,klar - chr3L_7_540001 chr3L_540001 RAL-890 800 chr3L 642466 642501 chr3L 642557 642592 12 90 1.0 3.0 2.0 4.0 126 chr3L 642466 5` UTR CR43334 + chr3L 642529 5` UTR CR43334 + chr3L 642592 5` UTR CR43334 + chr3L_12_640001 chr3L_640001 RAL-890 801 chr3L 705897 705928 chr3L 705993 706024 9 96 3.5 4.0 3.8 1.9 127 chr3L 705897 intergenic CG13895 -,CR44514 + chr3L 705960 3` UTR CG13895 - chr3L 706024 3` UTR CG13895 - chr3L_9_705001 chr3L_705001 RAL-890 802 chr3L 748905 748935 chr3L 748984 749014 4 79 19.0 16.0 17.5 0.2 109 chr3L 748905 intron hng3 - chr3L 748960 intron hng3 - chr3L 749014 intron hng3 - chr3L_4_745001 chr3L_745001 RAL-890 803 chr3L 875666 875692 chr3L 875752 875779 12 87 2.5 4.5 3.5 2.7 113 chr3L 875666 intron CG32479 + chr3L 875722 intron CG32479 + chr3L 875779 intron CG32479 + chr3L_12_875001 chr3L_875001 RAL-890 804 chr3L 899999 900019 chr3L 900083 900103 7 83 0.0 9.0 4.5 1.3 104 chr3L 899999 intergenic not near genes chr3L 900051 intergenic not near genes chr3L 900103 intergenic not near genes chr3L_7_900001 chr3L_900001 RAL-890 805 chr3L 922172 922183 chr3L 922246 922260 7 76 1.5 0.5 1.0 3.5 88 chr3L 922172 intron Glut1 + chr3L 922216 intron Glut1 + chr3L 922260 intron Glut1 + chr3L_7_920001 chr3L_920001 RAL-890 806 chr3L 925177 925208 chr3L 932603 932634 mdg1 20 7424 2.5 1.0 1.8 7.1 7457 chr3L 925177 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932634 intron Glut1 + chr3L_20_925001 chr3L_925001 RAL-890 807 chr3L 933909 933944 chr3L 934012 934047 8 103 2.5 4.5 3.5 1.8 138 chr3L 933909 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934047 intron Glut1 + chr3L_8_930001 chr3L_930001 RAL-890 808 chr3L 939775 939802 chr3L 940895 940923 jockey 11 1121 5.0 4.5 4.8 1.9 1148 chr3L 939775 intron Glut1 + chr3L 940349 intron Glut1 + chr3L 940923 intron Glut1 + chr3L_11_940001 chr3L_940001 RAL-890 809 chr3L 958316 958346 chr3L 958400 958430 13 83 3.5 5.0 4.2 2.5 114 chr3L 958316 intron Glut1 + chr3L 958373 intron Glut1 + chr3L 958430 intron Glut1 + chr3L_13_955001 chr3L_955001 RAL-890 810 chr3L 1003054 1003080 chr3L 1003131 1003157 9 77 2.5 2.0 2.2 2.8 103 chr3L 1003054 intron trio - chr3L 1003106 intron trio - chr3L 1003157 intron trio - chr3L_9_1000001 chr3L_1000001 RAL-890 811 chr3L 1042964 1042993 chr3L 1043042 1043071 8 78 1.5 4.0 2.8 2.1 107 chr3L 1042964 intron bab1 - chr3L 1043018 intron bab1 - chr3L 1043071 intron bab1 - chr3L_8_1040001 chr3L_1040001 RAL-890 812 chr3L 1154133 1154159 chr3L 1163282 1163309 roo 8 9150 1.5 2.5 2.0 2.7 9176 chr3L 1154133 intron bab2 - chr3L 1158721 intron bab2 - chr3L 1163309 intron bab2 - chr3L_8_1155001 chr3L_1155001 RAL-890 813 chr3L 1385178 1385209 chr3L 1385266 1385297 14 88 3.0 5.5 4.2 2.7 119 chr3L 1385178 intron,intron Ptp61F -,ru + chr3L 1385238 intron,intron Ptp61F -,ru + chr3L 1385297 intron,intron Ptp61F -,ru + chr3L_14_1385001 chr3L_1385001 RAL-890 814 chr3L 1463417 1463441 chr3L 1463498 1463507 9 78 4.0 4.0 4.0 1.8 90 chr3L 1463417 intron Ptp61F - chr3L 1463462 intron Ptp61F - chr3L 1463507 intron Ptp61F - chr3L_9_1460001 chr3L_1460001 RAL-890 815 chr3L 1502000 1502014 chr3L 1502081 1502095 7 81 1.5 0.5 1.0 3.5 95 chr3L 1502000 intron pUf68 - chr3L 1502048 intron pUf68 - chr3L 1502095 intron pUf68 - chr3L_7_1500001 chr3L_1500001 RAL-890 816 chr3L 1506001 1506030 chr3L 1513598 1513627 17.6 15 7597 4.5 2.5 3.5 3.3 7626 chr3L 1506001 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_15_1505001 chr3L_1505001 RAL-890 817 chr3L 1537059 1537085 chr3L 1537144 1537170 7 86 0.0 4.0 2.0 2.3 111 chr3L 1537059 intergenic CG7852 +,CG12091 - chr3L 1537114 intergenic CG7852 +,CG12091 - chr3L 1537170 5` UTR CG7852 + chr3L_7_1535001 chr3L_1535001 RAL-890 818 chr3L 1570595 1570599 chr3L 1570678 1570684 4 85 5.5 5.5 5.5 0.6 89 chr3L 1570595 intron CG12004 + chr3L 1570640 intron CG12004 + chr3L 1570684 intron CG12004 + chr3L_4_1570001 chr3L_1570001 RAL-890 819 chr3L 1639223 1639235 chr3L 1639404 1639416 4 181 1.5 1.0 1.2 1.8 193 chr3L 1639223 5` UTR metl - chr3L 1639320 intergenic metl -,Bgb + chr3L 1639416 intergenic metl -,Bgb + chr3L_4_1635001 chr3L_1635001 RAL-890 820 chr3L 1740852 1740887 chr3L 1741096 1741128 pogo 13 243 6.0 4.0 5.0 2.2 276 chr3L 1740852 intron Gk + chr3L 1740990 intron Gk + chr3L 1741128 intron Gk + chr3L_13_1740001 chr3L_1740001 RAL-890 821 chr3L 1805698 1805712 chr3L 1805872 1805886 4 174 3.0 2.0 2.5 1.1 188 chr3L 1805698 exon CG42676 + chr3L 1805792 intron CG42676 + chr3L 1805886 intron CG42676 + chr3L_4_1805001 chr3L_1805001 RAL-890 822 chr3L 1821639 1821649 chr3L 1821721 1821731 4 82 4.0 1.0 2.5 1.1 92 chr3L 1821639 intron GV1 + chr3L 1821685 intron GV1 + chr3L 1821731 intron GV1 + chr3L_4_1820001 chr3L_1820001 RAL-890 823 chr3L 1991119 1991153 chr3L 1991197 1991231 9 78 4.0 2.5 3.2 2.1 112 chr3L 1991119 intergenic not near genes chr3L 1991175 intergenic not near genes chr3L 1991231 intergenic not near genes chr3L_9_1990001 chr3L_1990001 RAL-890 824 chr3L 2035267 2035293 chr3L 2035343 2035367 8 76 3.5 0.0 1.8 2.9 100 chr3L 2035267 intergenic not near genes chr3L 2035317 intergenic not near genes chr3L 2035367 intergenic not near genes chr3L_8_2035001 chr3L_2035001 RAL-890 825 chr3L 2108248 2108280 chr3L 2113452 2113484 copia 6 5204 3.0 1.5 2.2 1.9 5236 chr3L 2108248 intron sls - chr3L 2110866 intron sls - chr3L 2113484 intron sls - chr3L_6_2110001 chr3L_2110001 RAL-890 826 chr3L 2139205 2139225 chr3L 2139286 2139306 9 80 4.0 5.0 4.5 1.6 101 chr3L 2139205 intron zormin - chr3L 2139256 intron zormin - chr3L 2139306 intron zormin - chr3L_9_2135001 chr3L_2135001 RAL-890 827 chr3L 2168775 2168806 chr3L 2168865 2168897 11 91 4.0 4.5 4.2 2.1 122 chr3L 2168775 exon CG15879 - chr3L 2168836 intron CG15879 - chr3L 2168897 intron CG15879 - chr3L_11_2165001 chr3L_2165001 RAL-890 828 chr3L 2308005 2308034 chr3L 2308111 2308140 7 105 3.0 2.0 2.5 2.0 135 chr3L 2308005 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308140 intergenic not near genes chr3L_7_2305001 chr3L_2305001 RAL-890 829 chr3L 2336826 2336845 chr3L 2336904 2336920 7 78 4.0 1.5 2.8 1.8 94 chr3L 2336826 intron MsR1 + chr3L 2336873 intron MsR1 + chr3L 2336920 intron MsR1 + chr3L_7_2335001 chr3L_2335001 RAL-890 830 chr3L 2382708 2382733 chr3L 2382789 2382811 4 80 2.5 2.0 2.2 1.2 103 chr3L 2382708 intergenic not near genes chr3L 2382760 intergenic not near genes chr3L 2382811 intergenic not near genes chr3L_4_2380001 chr3L_2380001 RAL-890 831 chr3L 2401159 2401181 chr3L 2401244 2401266 8 85 3.0 6.5 4.8 1.4 107 chr3L 2401159 intron CG45186 + chr3L 2401212 intron CG45186 + chr3L 2401266 intron CG45186 + chr3L_8_2400001 chr3L_2400001 RAL-890 832 chr3L 2447506 2447538 chr3L 2456662 2456694 roo 13 9152 4.5 4.0 4.2 2.5 9188 chr3L 2447506 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456694 intron CG45186 + chr3L_13_2450001 chr3L_2450001 RAL-890 833 chr3L 2493845 2493850 chr3L 2493931 2493938 5 87 2.0 1.5 1.8 1.8 93 chr3L 2493845 intron CG45186 + chr3L 2493892 intron CG45186 + chr3L 2493938 intron CG45186 + chr3L_5_2490001 chr3L_2490001 RAL-890 834 chr3L 2498729 2498761 chr3L 2498894 2498925 11 164 2.0 5.0 3.5 2.4 196 chr3L 2498729 3` UTR CG45186 + chr3L 2498827 3` UTR CG45186 + chr3L 2498925 3` UTR CG45186 + chr3L_11_2495001 chr3L_2495001 RAL-890 835 chr3L 2546762 2546794 chr3L 2546851 2546883 4 89 4.0 0.5 2.2 1.2 121 chr3L 2546762 intron Spn - chr3L 2546822 intron Spn - chr3L 2546883 intron Spn - chr3L_4_2545001 chr3L_2545001 RAL-890 836 chr3L 2554058 2554090 chr3L 2554136 2554168 5 78 2.5 0.0 1.2 2.3 110 chr3L 2554058 5` UTR Spn - chr3L 2554113 5` UTR Spn - chr3L 2554168 5` UTR Spn - chr3L_5_2550001 chr3L_2550001 RAL-890 837 chr3L 2561526 2561561 chr3L 2561603 2561638 7 77 2.0 3.5 2.8 1.8 112 chr3L 2561526 intron msn - chr3L 2561582 intron msn - chr3L 2561638 intron msn - chr3L_7_2560001 chr3L_2560001 RAL-890 838 chr3L 2631059 2631093 chr3L 2631169 2631203 10 109 3.0 1.5 2.2 3.1 144 chr3L 2631059 intergenic CR45660 - chr3L 2631131 intergenic CR45660 - chr3L 2631203 intergenic not near genes chr3L_10_2630001 chr3L_2630001 RAL-890 839 chr3L 2674750 2674764 chr3L 2674860 2674874 7 110 4.0 3.0 3.5 1.6 124 chr3L 2674750 intron Fife - chr3L 2674812 intron Fife - chr3L 2674874 intron Fife - chr3L_7_2670001 chr3L_2670001 RAL-890 840 chr3L 2683942 2683976 chr3L 2684018 2684052 8 76 4.5 5.0 4.8 1.4 110 chr3L 2683942 intron Fife - chr3L 2683997 intron Fife - chr3L 2684052 intron Fife - chr3L_8_2680001 chr3L_2680001 RAL-890 841 chr3L 2719546 2719554 chr3L 2719648 2719656 4 102 4.0 5.0 4.5 0.7 110 chr3L 2719546 3` UTR Mrtf - chr3L 2719601 3` UTR Mrtf - chr3L 2719656 3` UTR Mrtf - chr3L_4_2715001 chr3L_2715001 RAL-890 842 chr3L 2795724 2795749 chr3L 2795847 2795872 10 123 1.0 3.5 2.2 3.1 148 chr3L 2795724 intron CG43444 - chr3L 2795798 intron CG43444 - chr3L 2795872 intron CG43444 - chr3L_10_2795001 chr3L_2795001 RAL-890 843 chr3L 2927837 2927855 chr3L 2936114 2936132 Tirant 7 8277 4.5 2.5 3.5 1.6 8295 chr3L 2927837 intron Shab + chr3L 2931984 intron Shab + chr3L 2936132 intron Shab + chr3L_7_2930001 chr3L_2930001 RAL-890 844 chr3L 3027711 3027723 chr3L 3028187 3028197 5 475 5.0 0.0 2.5 1.4 486 chr3L 3027711 intergenic not near genes chr3L 3027954 intergenic not near genes chr3L 3028197 intergenic not near genes chr3L_5_3025001 chr3L_3025001 RAL-890 845 chr3L 3254097 3254106 chr3L 3254188 3254197 5 91 2.0 5.5 3.8 1.0 100 chr3L 3254097 5` UTR CR43626 + chr3L 3254147 5` UTR CR43626 + chr3L 3254197 5` UTR CR43626 + chr3L_5_3250001 chr3L_3250001 RAL-890 846 chr3L 3259625 3259833 chr3L 3259720 3259933 14 95 0.0 3.5 1.8 5.0 308 chr3L 3259625 intron ckd + chr3L 3259779 intron ckd + chr3L 3259933 intron ckd + chr3L_14_3255001 chr3L_3255001 RAL-890 847 chr3L 3281448 3281461 chr3L 3281943 3281944 Doc 4 492 3.0 5.5 4.2 0.8 496 chr3L 3281448 intron CG12017 + chr3L 3281696 intron CG12017 + chr3L 3281944 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-890 848 chr3L 3310312 3310326 chr3L 3310391 3310405 4 79 1.5 3.5 2.5 1.1 93 chr3L 3310312 intron ZnT63C + chr3L 3310358 intron ZnT63C + chr3L 3310405 intron ZnT63C + chr3L_4_3310001 chr3L_3310001 RAL-890 849 chr3L 3388591 3388617 chr3L 3388684 3388710 6 93 1.0 3.0 2.0 2.0 119 chr3L 3388591 intergenic not near genes chr3L 3388650 intergenic not near genes chr3L 3388710 intergenic not near genes chr3L_6_3385001 chr3L_3385001 RAL-890 850 chr3L 3475075 3475084 chr3L 3475519 3475522 jockey 4 442 4.0 1.5 2.8 1.1 447 chr3L 3475075 intron CG42324 + chr3L 3475298 intron CG42324 + chr3L 3475522 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-890 851 chr3L 3475089 3475110 chr3L 3475518 3475554 jockey 6 441 0.5 1.5 1.0 3.0 465 chr3L 3475089 intron CG42324 + chr3L 3475322 intron CG42324 + chr3L 3475554 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-890 852 chr3L 3484286 3484318 chr3L 3484378 3484409 8 91 3.0 6.0 4.5 1.5 123 chr3L 3484286 intron,exon CG42324 +,CG43074 - chr3L 3484348 intron,exon CG42324 +,CG43074 - chr3L 3484409 intron,intron CG42324 +,CG43074 - chr3L_8_3480001 chr3L_3480001 RAL-890 853 chr3L 3521348 3521384 chr3L 3521521 3521557 8 173 5.0 2.0 3.5 1.8 209 chr3L 3521348 intron Eip63E + chr3L 3521452 intron Eip63E + chr3L 3521557 intron Eip63E + chr3L_8_3520001 chr3L_3520001 RAL-890 854 chr3L 3601304 3601323 chr3L 3606615 3606632 copia 6 5311 2.0 3.5 2.8 1.6 5328 chr3L 3601304 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606632 intron Eip63E + chr3L_6_3600001 chr3L_3600001 RAL-890 855 chr3L 3627247 3627261 chr3L 3627352 3627366 6 105 2.5 5.5 4.0 1.2 119 chr3L 3627247 intron dar1 + chr3L 3627306 intron dar1 + chr3L 3627366 intron dar1 + chr3L_6_3625001 chr3L_3625001 RAL-890 856 chr3L 3665900 3665929 chr3L 3665989 3666018 13 89 3.5 2.0 2.8 3.4 118 chr3L 3665900 intergenic not near genes chr3L 3665959 intergenic not near genes chr3L 3666018 intergenic not near genes chr3L_13_3665001 chr3L_3665001 RAL-890 857 chr3L 3766738 3766756 chr3L 3766824 3766842 6 86 1.5 0.0 0.8 3.3 104 chr3L 3766738 intron CG32264 - chr3L 3766790 intron CG32264 - chr3L 3766842 intron CG32264 - chr3L_6_3765001 chr3L_3765001 RAL-890 858 chr3L 3783270 3783283 chr3L 3783347 3783360 4 76 2.5 0.0 1.2 1.8 90 chr3L 3783270 intron CG32264 - chr3L 3783315 intron CG32264 - chr3L 3783360 intron CG32264 - chr3L_4_3780001 chr3L_3780001 RAL-890 859 chr3L 3795610 3795621 chr3L 3795683 3795696 5 76 4.0 4.5 4.2 1.0 86 chr3L 3795610 intron CG32264 - chr3L 3795653 intron CG32264 - chr3L 3795696 intron CG32264 - chr3L_5_3795001 chr3L_3795001 RAL-890 860 chr3L 3815053 3815081 chr3L 3815134 3815161 8 80 4.0 2.0 3.0 2.0 108 chr3L 3815053 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815107 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815161 intron,intron Scsalpha +,CR43932 - chr3L_8_3815001 chr3L_3815001 RAL-890 861 chr3L 3833739 3833765 chr3L 3833980 3834005 pogo 5 238 2.5 1.5 2.0 1.7 266 chr3L 3833739 intron enc + chr3L 3833872 intron enc + chr3L 3834005 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-890 862 chr3L 3889133 3889141 chr3L 3889216 3889224 4 82 2.5 2.5 2.5 1.1 91 chr3L 3889133 intergenic not near genes chr3L 3889178 intergenic not near genes chr3L 3889224 intergenic not near genes chr3L_4_3885001 chr3L_3885001 RAL-890 863 chr3L 3935826 3935847 chr3L 3935904 3935925 9 78 2.0 1.0 1.5 3.6 99 chr3L 3935826 5` UTR Eip63F-2 + chr3L 3935876 5` UTR Eip63F-2 + chr3L 3935925 5` UTR Eip63F-2 + chr3L_9_3935001 chr3L_3935001 RAL-890 864 chr3L 4092740 4092754 chr3L 4092882 4092898 4 144 4.5 4.0 4.2 0.8 158 chr3L 4092740 intergenic CG14989 +,CG14990 + chr3L 4092819 intergenic CG14989 +,CG14990 + chr3L 4092898 intergenic CG14989 +,CG14990 + chr3L_4_4090001 chr3L_4090001 RAL-890 865 chr3L 4146811 4146838 chr3L 4146893 4146920 8 82 0.0 4.5 2.2 2.5 109 chr3L 4146811 intergenic not near genes chr3L 4146866 intergenic not near genes chr3L 4146920 intergenic not near genes chr3L_8_4145001 chr3L_4145001 RAL-890 866 chr3L 4195154 4195170 chr3L 4195240 4195274 4 98 2.0 1.5 1.8 1.4 120 chr3L 4195154 exon CG43367 + chr3L 4195214 intron CG43367 + chr3L 4195274 intron CG43367 + chr3L_4_4195001 chr3L_4195001 RAL-890 867 chr3L 4328755 4328765 chr3L 4336252 4336262 412 5 7497 3.0 5.0 4.0 1.0 7507 chr3L 4328755 intron Cip4 - chr3L 4332508 intron Cip4 - chr3L 4336262 intron Cip4 - chr3L_5_4330001 chr3L_4330001 RAL-890 868 chr3L 4342410 4342438 chr3L 4342489 4342506 7 76 0.0 2.0 1.0 3.5 96 chr3L 4342410 intron Cip4 - chr3L 4342458 intron Cip4 - chr3L 4342506 intron Cip4 - chr3L_7_4340001 chr3L_4340001 RAL-890 869 chr3L 4344889 4344905 chr3L 4344996 4345012 8 107 5.5 0.0 2.8 2.1 123 chr3L 4344889 intron Cip4 - chr3L 4344950 intron Cip4 - chr3L 4345012 intron Cip4 - chr3L_8_4340001 chr3L_4340001 RAL-890 870 chr3L 4423486 4423507 chr3L 4423569 4423601 5 90 0.0 2.5 1.2 2.3 115 chr3L 4423486 intron CG15020 + chr3L 4423544 intron CG15020 + chr3L 4423601 intron CG15020 + chr3L_5_4420001 chr3L_4420001 RAL-890 871 chr3L 4428697 4428714 chr3L 4428790 4428807 4 93 3.5 3.0 3.2 1.0 110 chr3L 4428697 intergenic not near genes chr3L 4428752 intergenic not near genes chr3L 4428807 intergenic not near genes chr3L_4_4425001 chr3L_4425001 RAL-890 872 chr3L 4784973 4784979 chr3L 4785171 4785187 4 206 1.0 2.5 1.8 1.4 214 chr3L 4784973 intron RhoGEF64C + chr3L 4785080 intron RhoGEF64C + chr3L 4785187 intron RhoGEF64C + chr3L_4_4785001 chr3L_4785001 RAL-890 873 chr3L 4858315 4858336 chr3L 4858404 4858426 5 89 2.0 5.0 3.5 1.1 111 chr3L 4858315 intergenic not near genes chr3L 4858370 intergenic not near genes chr3L 4858426 intergenic not near genes chr3L_5_4855001 chr3L_4855001 RAL-890 874 chr3L 4901126 4901157 chr3L 4907316 4907347 diver 10 6190 2.5 1.0 1.8 3.6 6221 chr3L 4901126 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907347 intergenic not near genes chr3L_10_4900001 chr3L_4900001 RAL-890 875 chr3L 4907979 4907989 chr3L 4908055 4908064 5 76 1.5 1.0 1.2 2.3 85 chr3L 4907979 intergenic not near genes chr3L 4908022 intergenic not near genes chr3L 4908064 intergenic not near genes chr3L_5_4905001 chr3L_4905001 RAL-890 876 chr3L 5015956 5015973 chr3L 5016038 5016059 7 84 2.5 3.5 3.0 1.8 103 chr3L 5015956 intron Con - chr3L 5016008 intron Con - chr3L 5016059 intron Con - chr3L_7_5015001 chr3L_5015001 RAL-890 877 chr3L 5045455 5045488 chr3L 5050236 5050269 Doc 11 4781 1.5 2.0 1.8 3.9 4814 chr3L 5045455 intron Con - chr3L 5047862 intron Con - chr3L 5050269 intron Con - chr3L_11_5045001 chr3L_5045001 RAL-890 878 chr3L 5104485 5104506 chr3L 5124619 5124640 4 20134 3.5 6.0 4.8 0.7 20155 chr3L 5104485 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124640 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-890 879 chr3L 5164644 5164662 chr3L 5164720 5164738 8 76 3.0 5.0 4.0 1.6 94 chr3L 5164644 intron shep - chr3L 5164691 intron shep - chr3L 5164738 intron shep - chr3L_8_5160001 chr3L_5160001 RAL-890 880 chr3L 5251859 5251870 chr3L 5251938 5251949 4 79 0.0 3.0 1.5 1.6 90 chr3L 5251859 intron shep - chr3L 5251904 intron shep - chr3L 5251949 intron shep - chr3L_4_5250001 chr3L_5250001 RAL-890 881 chr3L 5314243 5314278 chr3L 5314324 5314360 17 82 2.0 1.0 1.5 6.8 117 chr3L 5314243 intergenic not near genes chr3L 5314302 intergenic not near genes chr3L 5314360 intergenic not near genes chr3L_17_5310001 chr3L_5310001 RAL-890 882 chr3L 5327465 5327476 chr3L 5327550 5327561 5 85 4.5 2.0 3.2 1.2 96 chr3L 5327465 intergenic not near genes chr3L 5327513 intergenic not near genes chr3L 5327561 intergenic not near genes chr3L_5_5325001 chr3L_5325001 RAL-890 883 chr3L 5388211 5388225 chr3L 5388535 5388549 6 323 5.0 5.0 5.0 1.0 338 chr3L 5388211 intergenic not near genes chr3L 5388380 intergenic not near genes chr3L 5388549 intergenic not near genes chr3L_6_5385001 chr3L_5385001 RAL-890 884 chr3L 5449535 5449557 chr3L 5449614 5449636 5 79 2.0 4.0 3.0 1.2 101 chr3L 5449535 intergenic not near genes chr3L 5449586 intergenic not near genes chr3L 5449636 intergenic not near genes chr3L_5_5445001 chr3L_5445001 RAL-890 885 chr3L 5520353 5520369 chr3L 5520460 5520476 5 107 3.0 1.5 2.2 1.6 123 chr3L 5520353 intron Lkr - chr3L 5520414 intron Lkr - chr3L 5520476 intron Lkr - chr3L_5_5520001 chr3L_5520001 RAL-890 886 chr3L 5537730 5537755 chr3L 5538067 5538084 jockey 6 336 3.0 6.0 4.5 1.1 354 chr3L 5537730 intergenic not near genes chr3L 5537907 intergenic not near genes chr3L 5538084 intergenic CG10625 - chr3L_6_5535001 chr3L_5535001 RAL-890 887 chr3L 5677192 5677202 chr3L 5677268 5677278 9 76 0.5 4.0 2.2 2.8 86 chr3L 5677192 intron sif + chr3L 5677235 intron sif + chr3L 5677278 intron sif + chr3L_9_5675001 chr3L_5675001 RAL-890 888 chr3L 5705611 5705633 chr3L 5705700 5705722 11 88 2.5 3.0 2.8 2.9 111 chr3L 5705611 intron sif + chr3L 5705666 intron sif + chr3L 5705722 intron sif + chr3L_11_5705001 chr3L_5705001 RAL-890 889 chr3L 5910038 5910059 chr3L 5910278 5910298 pogo 9 241 3.0 5.5 4.2 1.7 260 chr3L 5910038 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910298 intron CG13288 + chr3L_9_5910001 chr3L_5910001 RAL-890 890 chr3L 5926315 5926324 chr3L 5926504 5926514 BS 4 190 5.5 3.5 4.5 0.7 199 chr3L 5926315 intron Vap-33B + chr3L 5926414 intron Vap-33B + chr3L 5926514 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-890 891 chr3L 6001679 6001717 chr3L 6004379 6004417 jockey 12 2700 2.0 2.5 2.2 3.8 2738 chr3L 6001679 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004417 intron PVRAP + chr3L_12_6000001 chr3L_6000001 RAL-890 892 chr3L 6052136 6052150 chr3L 6052222 6052236 5 86 0.0 5.0 2.5 1.4 100 chr3L 6052136 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052186 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052236 intergenic Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-890 893 chr3L 6220913 6220946 chr3L 6230065 6230098 roo 14 9150 4.0 3.5 3.8 2.9 9185 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_14_6225001 chr3L_6225001 RAL-890 894 chr3L 6335010 6335030 chr3L 6335481 6335501 297 6 471 2.5 5.0 3.8 1.2 491 chr3L 6335010 intron CG13300 - chr3L 6335256 intron CG13300 - chr3L 6335501 intron CG13300 - chr3L_6_6335001 chr3L_6335001 RAL-890 895 chr3L 6353376 6353398 chr3L 6353455 6353469 5 78 2.0 2.0 2.0 1.7 93 chr3L 6353376 intergenic not near genes chr3L 6353422 intergenic not near genes chr3L 6353469 intergenic not near genes chr3L_5_6350001 chr3L_6350001 RAL-890 896 chr3L 6362386 6362409 chr3L 6362463 6362486 6 77 2.0 0.0 1.0 3.0 100 chr3L 6362386 intergenic not near genes chr3L 6362436 intergenic not near genes chr3L 6362486 intergenic not near genes chr3L_6_6360001 chr3L_6360001 RAL-890 897 chr3L 6405658 6405685 chr3L 6432122 6432149 roo 4 26464 1.5 4.0 2.8 1.1 26491 chr3L 6405658 intron CG42747 + chr3L 6418904 intron CG42747 + chr3L 6432149 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-890 898 chr3L 6466026 6466053 chr3L 6466111 6466138 5 85 2.0 2.5 2.2 1.6 112 chr3L 6466026 intron CG42747 + chr3L 6466082 intron CG42747 + chr3L 6466138 intron CG42747 + chr3L_5_6465001 chr3L_6465001 RAL-890 899 chr3L 6614697 6614725 chr3L 6614893 6614921 12 196 2.5 2.0 2.2 3.8 224 chr3L 6614697 intron CG8398 + chr3L 6614809 intron CG8398 + chr3L 6614921 intron CG8398 + chr3L_12_6610001 chr3L_6610001 RAL-890 900 chr3L 6642873 6643168 chr3L 6642953 6643249 17 85 2.0 0.0 1.0 8.5 376 chr3L 6642873 intergenic CR45239 + chr3L 6643061 intergenic CR45239 + chr3L 6643249 intergenic CR45239 + chr3L_17_6640001 chr3L_6640001 RAL-890 901 chr3L 6643168 6643174 chr3L 6643256 6643262 5 88 1.5 7.0 4.2 1.0 94 chr3L 6643168 intergenic CR45239 + chr3L 6643215 intergenic CR45239 + chr3L 6643262 intergenic CR45239 + chr3L_5_6640001 chr3L_6640001 RAL-890 902 chr3L 6652079 6652108 chr3L 6652157 6652186 12 76 3.0 2.0 2.5 3.4 107 chr3L 6652079 intergenic not near genes chr3L 6652132 intergenic not near genes chr3L 6652186 intergenic not near genes chr3L_12_6650001 chr3L_6650001 RAL-890 903 chr3L 6654221 6654245 chr3L 6654467 6654494 9 248 2.0 2.5 2.2 2.8 273 chr3L 6654221 intergenic not near genes chr3L 6654358 intergenic not near genes chr3L 6654494 intergenic not near genes chr3L_9_6650001 chr3L_6650001 RAL-890 904 chr3L 6765680 6765688 chr3L 6765842 6765851 4 162 4.0 4.0 4.0 0.8 171 chr3L 6765680 intergenic not near genes chr3L 6765766 intergenic not near genes chr3L 6765851 intergenic not near genes chr3L_4_6765001 chr3L_6765001 RAL-890 905 chr3L 6855921 6855940 chr3L 6860703 6860724 Doc 7 4784 4.0 1.5 2.8 1.8 4803 chr3L 6855921 intergenic not near genes chr3L 6858322 intergenic not near genes chr3L 6860724 intergenic not near genes chr3L_7_6855001 chr3L_6855001 RAL-890 906 chr3L 6884625 6884640 chr3L 6884830 6884845 8 205 6.0 3.5 4.8 1.4 220 chr3L 6884625 intergenic not near genes chr3L 6884735 intergenic not near genes chr3L 6884845 intergenic not near genes chr3L_8_6880001 chr3L_6880001 RAL-890 907 chr3L 6884641 6884652 chr3L 6884825 6884857 5 199 3.0 3.0 3.0 1.2 216 chr3L 6884641 intergenic not near genes chr3L 6884749 intergenic not near genes chr3L 6884857 intergenic not near genes chr3L_5_6880001 chr3L_6880001 RAL-890 908 chr3L 6887517 6887549 chr3L 6895008 6895041 roo 11 7492 4.5 0.5 2.5 3.1 7524 chr3L 6887517 intergenic not near genes chr3L 6891279 intergenic not near genes chr3L 6895041 intergenic not near genes chr3L_11_6890001 chr3L_6890001 RAL-890 909 chr3L 6897797 6897825 chr3L 6897882 6897907 14 84 3.5 1.0 2.2 4.4 110 chr3L 6897797 intergenic not near genes chr3L 6897852 intergenic not near genes chr3L 6897907 intergenic not near genes chr3L_14_6895001 chr3L_6895001 RAL-890 910 chr3L 6908013 6908024 chr3L 6908098 6908109 4 85 5.5 0.0 2.8 1.1 96 chr3L 6908013 intergenic not near genes chr3L 6908061 intergenic not near genes chr3L 6908109 intergenic not near genes chr3L_4_6905001 chr3L_6905001 RAL-890 911 chr3L 6974503 6974525 chr3L 6974604 6974626 11 99 0.0 7.0 3.5 2.4 123 chr3L 6974503 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974626 intron Galphai - chr3L_11_6970001 chr3L_6970001 RAL-890 912 chr3L 6990722 6990731 chr3L 6990802 6990811 7 80 6.0 3.0 4.5 1.3 89 chr3L 6990722 5` UTR bin + chr3L 6990766 5` UTR bin + chr3L 6990811 5` UTR bin + chr3L_7_6990001 chr3L_6990001 RAL-890 913 chr3L 6994889 6994914 chr3L 6995500 6995524 BS 6 611 1.5 3.5 2.5 1.7 635 chr3L 6994889 intergenic bin + chr3L 6995206 intergenic not near genes chr3L 6995524 intergenic not near genes chr3L_6_6995001 chr3L_6995001 RAL-890 914 chr3L 7079806 7079837 chr3L 7079918 7079945 7 111 3.0 2.5 2.8 1.8 139 chr3L 7079806 intergenic not near genes chr3L 7079876 intergenic not near genes chr3L 7079945 intergenic not near genes chr3L_7_7075001 chr3L_7075001 RAL-890 915 chr3L 7100431 7100460 chr3L 7100518 7100544 13 87 3.0 2.5 2.8 3.4 113 chr3L 7100431 intron form3 + chr3L 7100488 intron form3 + chr3L 7100544 intron form3 + chr3L_13_7100001 chr3L_7100001 RAL-890 916 chr3L 7112583 7112611 chr3L 7112670 7112697 8 87 5.5 7.0 6.2 1.1 114 chr3L 7112583 intron form3 + chr3L 7112640 intron form3 + chr3L 7112697 intron form3 + chr3L_8_7110001 chr3L_7110001 RAL-890 917 chr3L 7129970 7129983 chr3L 7130162 7130175 BS 5 192 1.0 4.5 2.8 1.3 205 chr3L 7129970 intergenic CG15829 + chr3L 7130072 intergenic CG15829 + chr3L 7130175 intergenic not near genes chr3L_5_7130001 chr3L_7130001 RAL-890 918 chr3L 7150025 7150039 chr3L 7150091 7150118 5 76 0.0 5.0 2.5 1.4 93 chr3L 7150025 intron corn - chr3L 7150072 intron corn - chr3L 7150118 intron corn - chr3L_5_7150001 chr3L_7150001 RAL-890 919 chr3L 7187402 7187421 chr3L 7187484 7187503 9 82 0.0 0.0 0.0 9.0 101 chr3L 7187402 intron Dscam2 - chr3L 7187452 intron Dscam2 - chr3L 7187503 intron Dscam2 - chr3L_9_7185001 chr3L_7185001 RAL-890 920 chr3L 7244931 7244953 chr3L 7245021 7245044 5 91 2.5 2.0 2.2 1.6 113 chr3L 7244931 exon mei-P22 + chr3L 7244988 exon mei-P22 + chr3L 7245044 exon mei-P22 + chr3L_5_7240001 chr3L_7240001 RAL-890 921 chr3L 7285459 7285471 chr3L 7285537 7285549 4 78 4.0 5.0 4.5 0.7 90 chr3L 7285459 intron unc-13-4A - chr3L 7285504 intron unc-13-4A - chr3L 7285549 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-890 922 chr3L 7328943 7328973 chr3L 7329024 7329054 7 81 1.5 2.0 1.8 2.5 111 chr3L 7328943 intergenic CG8602 -,CG42307 +,mus312 + chr3L 7328998 intergenic CG42307 +,mus312 +,CG8602 - chr3L 7329054 intergenic CG42307 +,mus312 +,CG8602 - chr3L_7_7325001 chr3L_7325001 RAL-890 923 chr3L 7377317 7377346 chr3L 7380422 7380451 297 7 3105 1.0 2.0 1.5 2.8 3134 chr3L 7377317 intron SMSr - chr3L 7378884 intron SMSr - chr3L 7380451 intron SMSr - chr3L_7_7375001 chr3L_7375001 RAL-890 924 chr3L 7426005 7426042 chr3L 7426387 7426424 13 382 3.5 3.5 3.5 2.9 419 chr3L 7426005 intron CG42458 + chr3L 7426214 intron CG42458 + chr3L 7426424 intron CG42458 + chr3L_13_7425001 chr3L_7425001 RAL-890 925 chr3L 7450692 7450715 chr3L 7450771 7450798 7 82 1.0 3.0 2.0 2.3 106 chr3L 7450692 intron CG42458 + chr3L 7450745 intron CG42458 + chr3L 7450798 intron CG42458 + chr3L_7_7450001 chr3L_7450001 RAL-890 926 chr3L 7467008 7467036 chr3L 7467091 7467119 9 83 1.0 3.5 2.2 2.8 111 chr3L 7467008 3` UTR,3` UTR,5` UTR CG42660 +,CG42661 +,Tsp66A + chr3L 7467064 3` UTR,3` UTR,5` UTR CG42660 +,CG42661 +,Tsp66A + chr3L 7467119 intron,intron,intron CG42660 +,CG42661 +,Tsp66A + chr3L_9_7465001 chr3L_7465001 RAL-890 927 chr3L 7475219 7475251 chr3L 7475299 7475331 10 78 2.0 2.5 2.2 3.1 112 chr3L 7475219 intergenic CG43292 + chr3L 7475275 intergenic CG43292 + chr3L 7475331 intergenic CG43292 + chr3L_10_7475001 chr3L_7475001 RAL-890 928 chr3L 7498760 7498784 chr3L 7503537 7503561 F-element 9 4777 3.0 2.5 2.8 2.4 4801 chr3L 7498760 5` UTR CG8539 - chr3L 7501160 intergenic not near genes chr3L 7503561 intergenic not near genes chr3L_9_7500001 chr3L_7500001 RAL-890 929 chr3L 7568944 7568980 chr3L 7569023 7569059 6 79 2.0 1.5 1.8 2.1 115 chr3L 7568944 exon frac + chr3L 7569002 intron frac + chr3L 7569059 intron frac + chr3L_6_7565001 chr3L_7565001 RAL-890 930 chr3L 7591155 7591176 chr3L 7591237 7591267 10 82 2.5 2.5 2.5 2.9 112 chr3L 7591155 intergenic CG7716 - chr3L 7591211 intergenic CG7716 - chr3L 7591267 intergenic CG7716 - chr3L_10_7590001 chr3L_7590001 RAL-890 931 chr3L 7711825 7711853 chr3L 7711901 7711925 7 71 0.5 1.0 0.8 3.9 100 chr3L 7711825 intron,intron CG32373 +,Ank2 - chr3L 7711875 intron,intron CG32373 +,Ank2 - chr3L 7711925 intron,intron CG32373 +,Ank2 - chr3L_7_7710001 chr3L_7710001 RAL-890 932 chr3L 7793713 7793745 chr3L 7800765 7800797 297 13 7052 3.0 6.0 4.5 2.4 7084 chr3L 7793713 intron CG32369 - chr3L 7797255 intron CG32369 - chr3L 7800797 intron CG32369 - chr3L_13_7795001 chr3L_7795001 RAL-890 933 chr3L 7865563 7865581 chr3L 7865703 7865721 6 140 2.5 0.5 1.5 2.4 158 chr3L 7865563 intron Pdp1 - chr3L 7865642 intron Pdp1 - chr3L 7865721 intron Pdp1 - chr3L_6_7865001 chr3L_7865001 RAL-890 934 chr3L 7886518 7886545 chr3L 7889034 7889063 Stalker4 8 2518 0.0 4.0 2.0 2.7 2545 chr3L 7886518 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889063 intron CG32365 + chr3L_8_7885001 chr3L_7885001 RAL-890 935 chr3L 7916839 7916860 chr3L 7926004 7926031 roo 9 9170 2.0 2.5 2.2 2.8 9192 chr3L 7916839 3` UTR syd - chr3L 7921435 intron syd - chr3L 7926031 3` UTR syd - chr3L_9_7920001 chr3L_7920001 RAL-890 936 chr3L 7985361 7985396 chr3L 7987689 7987724 NOF 14 2326 4.5 6.0 5.2 2.3 2363 chr3L 7985361 intron nmo + chr3L 7986542 intron nmo + chr3L 7987724 intron nmo + chr3L_14_7985001 chr3L_7985001 RAL-890 937 chr3L 8019702 8019735 chr3L 8024114 8024148 NOF 8 4406 1.5 3.5 2.5 2.3 4446 chr3L 8019702 intron nmo + chr3L 8021925 intron nmo + chr3L 8024148 intron nmo + chr3L_8_8020001 chr3L_8020001 RAL-890 938 chr3L 8210802 8210804 chr3L 8210917 8210919 4 115 6.0 2.5 4.2 0.8 117 chr3L 8210802 intergenic CG32364 - chr3L 8210860 intergenic CG32364 - chr3L 8210919 intergenic CG32364 - chr3L_4_8210001 chr3L_8210001 RAL-890 939 chr3L 8213561 8213591 chr3L 8213639 8213668 6 78 3.0 1.5 2.2 1.9 107 chr3L 8213561 3` UTR CG8006 + chr3L 8213614 3` UTR CG8006 + chr3L 8213668 intergenic CG8006 + chr3L_6_8210001 chr3L_8210001 RAL-890 940 chr3L 8226716 8226748 chr3L 8226815 8226846 4 99 0.5 0.0 0.2 3.3 130 chr3L 8226716 intergenic not near genes chr3L 8226781 intergenic not near genes chr3L 8226846 intergenic not near genes chr3L_4_8225001 chr3L_8225001 RAL-890 941 chr3L 8248319 8248342 chr3L 8248398 8248431 8 85 3.0 3.0 3.0 2.0 112 chr3L 8248319 intron Dscam4 + chr3L 8248375 intron Dscam4 + chr3L 8248431 intron Dscam4 + chr3L_8_8245001 chr3L_8245001 RAL-890 942 chr3L 8423685 8423702 chr3L 8423803 8423820 4 117 1.5 2.0 1.8 1.4 135 chr3L 8423685 intergenic not near genes chr3L 8423752 intergenic not near genes chr3L 8423820 intergenic not near genes chr3L_4_8420001 chr3L_8420001 RAL-890 943 chr3L 8451393 8451414 chr3L 8451471 8451492 5 78 1.5 1.5 1.5 2.0 99 chr3L 8451393 intron Gug + chr3L 8451442 intron Gug + chr3L 8451492 intron Gug + chr3L_5_8450001 chr3L_8450001 RAL-890 944 chr3L 8498296 8498325 chr3L 8505763 8505791 blood 9 7467 8.0 2.0 5.0 1.5 7495 chr3L 8498296 intron CG43163 - chr3L 8502044 intron CG43163 - chr3L 8505791 intron CG43163 - chr3L_9_8500001 chr3L_8500001 RAL-890 945 chr3L 8579850 8579881 chr3L 8579930 8579961 4 78 2.0 1.5 1.8 1.4 111 chr3L 8579850 intron CG43078 + chr3L 8579906 intron CG43078 + chr3L 8579961 intron CG43078 + chr3L_4_8575001 chr3L_8575001 RAL-890 946 chr3L 8752416 8752445 chr3L 8752604 8752634 6 188 0.0 4.5 2.2 1.9 218 chr3L 8752416 intergenic not near genes chr3L 8752525 intergenic not near genes chr3L 8752634 intergenic not near genes chr3L_6_8750001 chr3L_8750001 RAL-890 947 chr3L 8791284 8791291 chr3L 8796704 8796710 I-element 4 5419 6.0 0.0 3.0 1.0 5426 chr3L 8791284 exon Fhos + chr3L 8793997 intron Fhos + chr3L 8796710 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-890 948 chr3L 8827116 8827129 chr3L 8827326 8827339 4 210 0.0 5.0 2.5 1.1 223 chr3L 8827116 intergenic dally + chr3L 8827228 intergenic dally + chr3L 8827339 intergenic dally + chr3L_4_8825001 chr3L_8825001 RAL-890 949 chr3L 8827543 8827568 chr3L 8827616 8827644 6 72 2.5 2.0 2.2 1.9 101 chr3L 8827543 5` UTR dally + chr3L 8827594 5` UTR dally + chr3L 8827644 5` UTR dally + chr3L_6_8825001 chr3L_8825001 RAL-890 950 chr3L 8839729 8839747 chr3L 8839809 8839827 8 80 2.0 1.5 1.8 2.9 98 chr3L 8839729 intron dally + chr3L 8839778 intron dally + chr3L 8839827 intron dally + chr3L_8_8835001 chr3L_8835001 RAL-890 951 chr3L 8949403 8949510 chr3L 8949498 8949591 9 86 0.0 0.0 0.0 9.0 188 chr3L 8949403 intron,intron CG43783 -,orb2 - chr3L 8949497 intron,intron CG43783 -,orb2 - chr3L 8949591 intron,intron CG43783 -,orb2 - chr3L_9_8945001 chr3L_8945001 RAL-890 952 chr3L 9008644 9008668 chr3L 9008726 9008751 12 82 3.0 3.5 3.2 2.9 107 chr3L 9008644 3` UTR CG5194 - chr3L 9008698 3` UTR CG5194 - chr3L 9008751 exon CG5194 - chr3L_12_9005001 chr3L_9005001 RAL-890 953 chr3L 9010651 9010672 chr3L 9010727 9010747 6 75 5.5 0.5 3.0 1.5 96 chr3L 9010651 intergenic not near genes chr3L 9010699 intergenic not near genes chr3L 9010747 intergenic not near genes chr3L_6_9010001 chr3L_9010001 RAL-890 954 chr3L 9024513 9024532 chr3L 9024593 9024612 7 80 1.5 5.0 3.2 1.7 99 chr3L 9024513 intergenic not near genes chr3L 9024562 intergenic not near genes chr3L 9024612 intergenic not near genes chr3L_7_9020001 chr3L_9020001 RAL-890 955 chr3L 9076927 9076953 chr3L 9084487 9084513 412 10 7560 4.5 4.0 4.2 1.9 7586 chr3L 9076927 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084513 exon Tequila + chr3L_10_9080001 chr3L_9080001 RAL-890 956 chr3L 9109928 9109958 chr3L 9110017 9110048 5 89 1.5 1.0 1.2 2.3 120 chr3L 9109928 intron bol - chr3L 9109988 intron bol - chr3L 9110048 intron bol - chr3L_5_9105001 chr3L_9105001 RAL-890 957 chr3L 9130556 9130582 chr3L 9134317 9134343 412 4 3761 2.5 2.5 2.5 1.1 3787 chr3L 9130556 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-890 958 chr3L 9164695 9164729 chr3L 9166162 9166196 hobo 7 1467 2.5 0.5 1.5 2.8 1501 chr3L 9164695 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166196 intron Rdl - chr3L_7_9165001 chr3L_9165001 RAL-890 959 chr3L 9219248 9219271 chr3L 9219919 9219943 jockey 7 671 3.5 4.0 3.8 1.5 695 chr3L 9219248 intergenic not near genes chr3L 9219596 intergenic not near genes chr3L 9219943 intergenic not near genes chr3L_7_9215001 chr3L_9215001 RAL-890 960 chr3L 9270632 9270648 chr3L 9278383 9278399 roo 4 7751 2.0 3.0 2.5 1.1 7767 chr3L 9270632 intron GluRIB + chr3L 9274516 intron GluRIB + chr3L 9278399 exon GluRIB + chr3L_4_9270001 chr3L_9270001 RAL-890 961 chr3L 9290050 9290077 chr3L 9290126 9290153 11 76 0.0 2.5 1.2 5.0 103 chr3L 9290050 intergenic not near genes chr3L 9290102 intergenic not near genes chr3L 9290153 intergenic not near genes chr3L_11_9290001 chr3L_9290001 RAL-890 962 chr3L 9443507 9443540 chr3L 9445298 9445331 S-element 12 1790 4.0 3.5 3.8 2.5 1824 chr3L 9443507 intron CG33926 + chr3L 9444419 intron CG33926 + chr3L 9445331 intron CG33926 + chr3L_12_9440001 chr3L_9440001 RAL-890 963 chr3L 9498203 9498231 chr3L 9498280 9498308 11 77 4.0 1.5 2.8 2.9 105 chr3L 9498203 intron path - chr3L 9498256 intron path - chr3L 9498308 intron path - chr3L_11_9495001 chr3L_9495001 RAL-890 964 chr3L 9501724 9501734 chr3L 9502210 9502219 roo 4 486 4.0 0.0 2.0 1.3 495 chr3L 9501724 intron path - chr3L 9501972 intron path - chr3L 9502219 intron path - chr3L_4_9500001 chr3L_9500001 RAL-890 965 chr3L 9502617 9502643 chr3L 9502697 9502723 9 80 2.5 3.0 2.8 2.4 106 chr3L 9502617 intron path - chr3L 9502670 intron path - chr3L 9502723 intron path - chr3L_9_9500001 chr3L_9500001 RAL-890 966 chr3L 9510911 9510953 chr3L 9511004 9511031 5 88 0.0 4.0 2.0 1.7 120 chr3L 9510911 intron RpS9 - chr3L 9510971 intron RpS9 - chr3L 9511031 intron RpS9 - chr3L_5_9510001 chr3L_9510001 RAL-890 967 chr3L 9532487 9532505 chr3L 9532583 9532601 8 96 0.5 1.5 1.0 4.0 114 chr3L 9532487 intergenic not near genes chr3L 9532544 intergenic not near genes chr3L 9532601 intergenic not near genes chr3L_8_9530001 chr3L_9530001 RAL-890 968 chr3L 9571898 9571931 chr3L 9572246 9572278 jockey 16 348 2.5 2.0 2.2 5.0 380 chr3L 9571898 intron CG42673 + chr3L 9572088 intron CG42673 + chr3L 9572278 intron CG42673 + chr3L_16_9570001 chr3L_9570001 RAL-890 969 chr3L 9575907 9575946 chr3L 9580984 9581014 jockey 7 5076 3.5 4.5 4.0 1.4 5107 chr3L 9575907 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581014 intron CG42673 + chr3L_7_9575001 chr3L_9575001 RAL-890 970 chr3L 9738654 9738671 chr3L 9738744 9738762 7 91 2.5 0.0 1.2 3.2 108 chr3L 9738654 intron CG42268 - chr3L 9738708 intron CG42268 - chr3L 9738762 intron CG42268 - chr3L_7_9735001 chr3L_9735001 RAL-890 971 chr3L 9775385 9775394 chr3L 9775745 9775754 5 360 0.5 2.5 1.5 2.0 369 chr3L 9775385 intron CG8177 + chr3L 9775570 intron CG8177 + chr3L 9775754 intron CG8177 + chr3L_5_9775001 chr3L_9775001 RAL-890 972 chr3L 9848514 9848550 chr3L 9848590 9848626 10 75 1.5 0.0 0.8 5.6 112 chr3L 9848514 intron RasGAP1 - chr3L 9848570 intron RasGAP1 - chr3L 9848626 intron RasGAP1 - chr3L_10_9845001 chr3L_9845001 RAL-890 973 chr3L 9858049 9858075 chr3L 9858125 9858150 11 77 3.0 5.0 4.0 2.2 101 chr3L 9858049 3` UTR CG10809 - chr3L 9858100 intron CG10809 - chr3L 9858150 intron CG10809 - chr3L_11_9855001 chr3L_9855001 RAL-890 974 chr3L 9987109 9987130 chr3L 9987187 9987208 4 78 2.5 1.5 2.0 1.3 99 chr3L 9987109 intron dpr6 + chr3L 9987158 intron dpr6 + chr3L 9987208 intron dpr6 + chr3L_4_9985001 chr3L_9985001 RAL-890 975 chr3L 9992724 9992727 chr3L 9992808 9992811 4 84 2.0 0.5 1.2 1.8 87 chr3L 9992724 intron dpr6 + chr3L 9992768 intron dpr6 + chr3L 9992811 intron dpr6 + chr3L_4_9990001 chr3L_9990001 RAL-890 976 chr3L 10003151 10003176 chr3L 10003248 10003273 6 97 5.5 1.5 3.5 1.3 122 chr3L 10003151 intron dpr6 + chr3L 10003212 intron dpr6 + chr3L 10003273 intron dpr6 + chr3L_6_10000001 chr3L_10000001 RAL-890 977 chr3L 10011588 10011622 chr3L 10011669 10011704 17 81 3.0 1.5 2.2 5.3 116 chr3L 10011588 intron dpr6 + chr3L 10011646 intron dpr6 + chr3L 10011704 intron dpr6 + chr3L_17_10010001 chr3L_10010001 RAL-890 978 chr3L 10127741 10127769 chr3L 10127814 10127846 7 75 4.0 1.0 2.5 2.0 105 chr3L 10127741 intron dpr6 + chr3L 10127794 intron dpr6 + chr3L 10127846 intron dpr6 + chr3L_7_10125001 chr3L_10125001 RAL-890 979 chr3L 10145055 10145086 chr3L 10145224 10145255 14 169 0.5 3.0 1.8 5.0 200 chr3L 10145055 intergenic not near genes chr3L 10145155 intergenic not near genes chr3L 10145255 intergenic not near genes chr3L_14_10145001 chr3L_10145001 RAL-890 980 chr3L 10255376 10255405 chr3L 10255474 10255500 10 97 0.0 1.0 0.5 6.7 124 chr3L 10255376 intergenic not near genes chr3L 10255438 intergenic not near genes chr3L 10255500 intergenic not near genes chr3L_10_10255001 chr3L_10255001 RAL-890 981 chr3L 10308752 10308775 chr3L 10308829 10308852 11 77 4.0 3.5 3.8 2.3 100 chr3L 10308752 intergenic not near genes chr3L 10308802 intergenic not near genes chr3L 10308852 intergenic not near genes chr3L_11_10305001 chr3L_10305001 RAL-890 982 chr3L 10310351 10310380 chr3L 10310448 10310477 12 97 5.5 4.5 5.0 2.0 126 chr3L 10310351 intergenic not near genes chr3L 10310414 intergenic not near genes chr3L 10310477 intergenic not near genes chr3L_12_10310001 chr3L_10310001 RAL-890 983 chr3L 10390253 10390265 chr3L 10390345 10390357 5 92 3.0 0.5 1.8 1.8 104 chr3L 10390253 intergenic not near genes chr3L 10390305 intergenic not near genes chr3L 10390357 intergenic not near genes chr3L_5_10390001 chr3L_10390001 RAL-890 984 chr3L 10414941 10414975 chr3L 10417313 10417347 Doc 14 2371 4.5 0.5 2.5 4.0 2406 chr3L 10414941 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_14_10415001 chr3L_10415001 RAL-890 985 chr3L 10417568 10417606 chr3L 10417644 10417682 10 75 3.5 1.5 2.5 2.9 114 chr3L 10417568 intergenic not near genes chr3L 10417625 intergenic not near genes chr3L 10417682 intergenic not near genes chr3L_10_10415001 chr3L_10415001 RAL-890 986 chr3L 10466045 10466078 chr3L 10466124 10466157 4 79 1.5 3.0 2.2 1.2 112 chr3L 10466045 intron S-Lap3 + chr3L 10466101 intron S-Lap3 + chr3L 10466157 intron S-Lap3 + chr3L_4_10465001 chr3L_10465001 RAL-890 987 chr3L 10485077 10485104 chr3L 10485239 10485266 7 162 6.0 2.5 4.2 1.3 189 chr3L 10485077 intron A2bp1 + chr3L 10485172 intron A2bp1 + chr3L 10485266 intron A2bp1 + chr3L_7_10485001 chr3L_10485001 RAL-890 988 chr3L 10518580 10518609 chr3L 10518715 10518743 8 134 2.5 2.0 2.2 2.5 163 chr3L 10518580 intron A2bp1 + chr3L 10518662 intron A2bp1 + chr3L 10518743 intron A2bp1 + chr3L_8_10515001 chr3L_10515001 RAL-890 989 chr3L 10600459 10600470 chr3L 10600541 10600549 4 81 3.5 2.5 3.0 1.0 90 chr3L 10600459 intergenic not near genes chr3L 10600504 intergenic not near genes chr3L 10600549 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-890 990 chr3L 10621857 10621873 chr3L 10621944 10621960 4 87 1.0 4.5 2.8 1.1 103 chr3L 10621857 intergenic not near genes chr3L 10621908 intergenic not near genes chr3L 10621960 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-890 991 chr3L 10658076 10658207 chr3L 10658153 10658333 10 102 2.0 2.0 2.0 3.3 257 chr3L 10658076 intron CG32066 - chr3L 10658204 intron CG32066 - chr3L 10658333 intron CG32066 - chr3L_10_10655001 chr3L_10655001 RAL-890 992 chr3L 10887366 10887380 chr3L 10887445 10887459 4 79 0.5 3.0 1.8 1.4 93 chr3L 10887366 intergenic not near genes chr3L 10887412 intergenic not near genes chr3L 10887459 intergenic not near genes chr3L_4_10885001 chr3L_10885001 RAL-890 993 chr3L 10889235 10889259 chr3L 10889315 10889339 6 80 7.0 4.5 5.8 0.9 104 chr3L 10889235 intergenic not near genes chr3L 10889287 intergenic not near genes chr3L 10889339 intergenic not near genes chr3L_6_10885001 chr3L_10885001 RAL-890 994 chr3L 10940083 10940100 chr3L 10940159 10940170 4 74 1.0 3.0 2.0 1.3 87 chr3L 10940083 intergenic not near genes chr3L 10940126 intergenic not near genes chr3L 10940170 intergenic not near genes chr3L_4_10940001 chr3L_10940001 RAL-890 995 chr3L 10956450 10956460 chr3L 10956568 10956578 5 118 3.5 4.5 4.0 1.0 128 chr3L 10956450 intergenic not near genes chr3L 10956514 intergenic not near genes chr3L 10956578 intergenic not near genes chr3L_5_10955001 chr3L_10955001 RAL-890 996 chr3L 10957003 10957035 chr3L 10957079 10957111 9 76 1.0 4.0 2.5 2.6 108 chr3L 10957003 intergenic not near genes chr3L 10957057 intergenic not near genes chr3L 10957111 intergenic not near genes chr3L_9_10955001 chr3L_10955001 RAL-890 997 chr3L 11087083 11087087 chr3L 11088872 11088875 S-element 5 1789 1.5 5.0 3.2 1.2 1792 chr3L 11087083 intron JIL-1 - chr3L 11087979 intron JIL-1 - chr3L 11088875 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-890 998 chr3L 11187712 11187739 chr3L 11187793 11187820 7 81 0.0 1.5 0.8 3.9 108 chr3L 11187712 intron GlcAT-P - chr3L 11187766 intron GlcAT-P - chr3L 11187820 intron GlcAT-P - chr3L_7_11185001 chr3L_11185001 RAL-890 999 chr3L 11241780 11241793 chr3L 11241862 11241873 6 81 1.0 2.0 1.5 2.4 93 chr3L 11241780 intergenic not near genes chr3L 11241826 intergenic not near genes chr3L 11241873 intergenic not near genes chr3L_6_11240001 chr3L_11240001 RAL-890 1000 chr3L 11264461 11264496 chr3L 11271413 11271445 17.6 5 6951 3.5 1.5 2.5 1.4 6984 chr3L 11264461 intergenic not near genes chr3L 11267953 intergenic not near genes chr3L 11271445 intergenic not near genes chr3L_5_11265001 chr3L_11265001 RAL-890 1001 chr3L 11271804 11271821 chr3L 11272081 11272097 9 277 3.5 1.5 2.5 2.6 293 chr3L 11271804 intergenic not near genes chr3L 11271950 intergenic not near genes chr3L 11272097 intergenic not near genes chr3L_9_11270001 chr3L_11270001 RAL-890 1002 chr3L 11339651 11339657 chr3L 11339723 11339733 5 75 6.0 7.0 6.5 0.7 82 chr3L 11339651 intergenic not near genes chr3L 11339692 intergenic not near genes chr3L 11339733 intergenic not near genes chr3L_5_11335001 chr3L_11335001 RAL-890 1003 chr3L 11383962 11383996 chr3L 11384040 11384075 11 72 1.0 0.5 0.8 6.1 113 chr3L 11383962 intron CR42755 - chr3L 11384018 3` UTR CR42755 - chr3L 11384075 3` UTR CR42755 - chr3L_11_11380001 chr3L_11380001 RAL-890 1004 chr3L 11422481 11422500 chr3L 11422570 11422589 6 89 1.0 4.0 2.5 1.7 108 chr3L 11422481 intergenic not near genes chr3L 11422535 intergenic not near genes chr3L 11422589 intergenic not near genes chr3L_6_11420001 chr3L_11420001 RAL-890 1005 chr3L 11549590 11549611 chr3L 11549816 11549836 6 226 0.5 4.0 2.2 1.9 246 chr3L 11549590 intron Mob2 - chr3L 11549713 intron Mob2 - chr3L 11549836 intron Mob2 - chr3L_6_11545001 chr3L_11545001 RAL-890 1006 chr3L 11579556 11579584 chr3L 11579662 11579690 9 106 1.5 2.5 2.0 3.0 134 chr3L 11579556 intergenic CG43390 - chr3L 11579623 intergenic CG43390 - chr3L 11579690 intergenic CG43390 - chr3L_9_11575001 chr3L_11575001 RAL-890 1007 chr3L 11678095 11678125 chr3L 11678182 11678212 10 87 0.0 4.0 2.0 3.3 117 chr3L 11678095 intron CG32085 - chr3L 11678154 intron CG32085 - chr3L 11678212 intron CG32085 - chr3L_10_11675001 chr3L_11675001 RAL-890 1008 chr3L 11723082 11723114 chr3L 11727877 11727909 Doc 15 4795 3.0 3.5 3.2 3.6 4827 chr3L 11723082 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727909 3` UTR Bmcp + chr3L_15_11725001 chr3L_11725001 RAL-890 1009 chr3L 11744015 11744039 chr3L 11744119 11744147 7 107 3.0 0.0 1.5 2.8 132 chr3L 11744015 exon CG6024 - chr3L 11744081 intron CG6024 - chr3L 11744147 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-890 1010 chr3L 802566 802566 chr3L 11777678 11777678 4 10975112 7.0 8.5 7.8 0.5 10975112 chr3L 802566 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_6290001 chr3L_6290001 RAL-890 1011 chr3L 11811463 11811487 chr3L 11811541 11811564 17 78 1.5 6.0 3.8 3.5 101 chr3L 11811463 intron CG42255 - chr3L 11811514 intron CG42255 - chr3L 11811564 exon CG42255 - chr3L_17_11810001 chr3L_11810001 RAL-890 1012 chr3L 11849333 11849355 chr3L 11849432 11849449 7 99 3.5 6.5 5.0 1.2 116 chr3L 11849333 intergenic not near genes chr3L 11849391 intergenic not near genes chr3L 11849449 intergenic not near genes chr3L_7_11845001 chr3L_11845001 RAL-890 1013 chr3L 11850144 11850170 chr3L 11850234 11850265 7 94 5.0 0.0 2.5 2.0 121 chr3L 11850144 intergenic not near genes chr3L 11850204 intergenic CG44837 - chr3L 11850265 intergenic CG44837 - chr3L_7_11850001 chr3L_11850001 RAL-890 1014 chr3L 11864552 11864581 chr3L 11865847 11865875 pogo 10 1294 3.5 4.5 4.0 2.0 1323 chr3L 11864552 intron CG44837 - chr3L 11865214 intron CG44837 - chr3L 11865875 intron CG44837 - chr3L_10_11865001 chr3L_11865001 RAL-890 1015 chr3L 11936613 11936630 chr3L 11936693 11936706 5 78 1.5 3.0 2.2 1.6 93 chr3L 11936613 intron CG44837 - chr3L 11936660 intron CG44837 - chr3L 11936706 intron CG44837 - chr3L_5_11935001 chr3L_11935001 RAL-890 1016 chr3L 11943496 11943521 chr3L 11943597 11943621 7 100 0.5 3.0 1.8 2.5 125 chr3L 11943496 intergenic Rpt4R +,CG5883 - chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943621 intergenic CG5883 -,Rpt4R + chr3L_7_11940001 chr3L_11940001 RAL-890 1017 chr3L 12013924 12013938 chr3L 12014015 12014029 5 90 1.5 1.5 1.5 2.0 105 chr3L 12013924 intron rols - chr3L 12013976 intron rols - chr3L 12014029 intron rols - chr3L_5_12010001 chr3L_12010001 RAL-890 1018 chr3L 12019326 12019348 chr3L 12019436 12019461 7 113 1.5 1.5 1.5 2.8 135 chr3L 12019326 intron rols - chr3L 12019394 intron rols - chr3L 12019461 intron rols - chr3L_7_12015001 chr3L_12015001 RAL-890 1019 chr3L 12075429 12075448 chr3L 12075518 12075537 6 88 3.0 0.0 1.5 2.4 108 chr3L 12075429 intron Sema-5c - chr3L 12075483 intron Sema-5c - chr3L 12075537 intron Sema-5c - chr3L_6_12075001 chr3L_12075001 RAL-890 1020 chr3L 12158494 12158524 chr3L 12158715 12158744 11 220 22.5 32.0 27.2 0.4 250 chr3L 12158494 intron CG9760 - chr3L 12158619 intron CG9760 - chr3L 12158744 intron CG9760 - chr3L_11_12155001 chr3L_12155001 RAL-890 1021 chr3L 12158776 12158783 chr3L 12160248 12160280 7 1475 77.5 48.0 62.8 0.1 1504 chr3L 12158776 intron CG9760 - chr3L 12159528 exon CG9760 - chr3L 12160280 intron CG9760 - chr3L_7_12155001 chr3L_12155001 RAL-890 1022 chr3L 12156429 12156445 chr3L 12160314 12160348 20 3888 22.5 28.5 25.5 0.8 3919 chr3L 12156429 3` UTR Nrx-IV + chr3L 12158388 intron CG9760 - chr3L 12160348 intron CG9760 - chr3L_20_12155001 chr3L_12155001 RAL-890 1023 chr3L 12170804 12170824 chr3L 12170885 12170906 4 82 2.0 3.5 2.8 1.1 102 chr3L 12170804 intron Rh7 - chr3L 12170855 intron Rh7 - chr3L 12170906 intron Rh7 - chr3L_4_12170001 chr3L_12170001 RAL-890 1024 chr3L 12304097 12304114 chr3L 12304173 12304187 5 74 1.5 4.5 3.0 1.2 90 chr3L 12304097 intergenic not near genes chr3L 12304142 intergenic not near genes chr3L 12304187 intergenic not near genes chr3L_5_12300001 chr3L_12300001 RAL-890 1025 chr3L 12307611 12307615 chr3L 12307691 12307695 4 80 2.0 0.5 1.2 1.8 84 chr3L 12307611 intergenic not near genes chr3L 12307653 intergenic not near genes chr3L 12307695 intergenic not near genes chr3L_4_12305001 chr3L_12305001 RAL-890 1026 chr3L 12326742 12326775 chr3L 12326818 12326851 8 76 3.0 5.5 4.2 1.5 109 chr3L 12326742 intergenic not near genes chr3L 12326796 intergenic not near genes chr3L 12326851 intergenic not near genes chr3L_8_12325001 chr3L_12325001 RAL-890 1027 chr3L 12412730 12412753 chr3L 12412815 12412838 9 85 3.5 2.5 3.0 2.2 108 chr3L 12412730 intron CG32103 - chr3L 12412784 intron CG32103 - chr3L 12412838 intron CG32103 - chr3L_9_12410001 chr3L_12410001 RAL-890 1028 chr3L 12460316 12460337 chr3L 12460392 12460414 9 77 0.0 2.0 1.0 4.5 98 chr3L 12460316 intergenic not near genes chr3L 12460365 intergenic not near genes chr3L 12460414 intergenic not near genes chr3L_9_12460001 chr3L_12460001 RAL-890 1029 chr3L 12491705 12491735 chr3L 12491787 12491818 4 82 0.0 1.5 0.8 2.2 113 chr3L 12491705 intergenic CG10657 -,CR45682 + chr3L 12491762 intergenic CG10657 -,CR45682 + chr3L 12491818 intergenic CG10657 -,CR45682 + chr3L_4_12490001 chr3L_12490001 RAL-890 1030 chr3L 12610995 12611022 chr3L 12611241 12611268 8 246 3.5 1.0 2.2 2.5 273 chr3L 12610995 intron caup + chr3L 12611132 intron caup + chr3L 12611268 intron caup + chr3L_8_12610001 chr3L_12610001 RAL-890 1031 chr3L 12626154 12626165 chr3L 12626263 12626271 4 108 2.0 3.0 2.5 1.1 117 chr3L 12626154 intergenic not near genes chr3L 12626212 intergenic not near genes chr3L 12626271 intergenic not near genes chr3L_4_12625001 chr3L_12625001 RAL-890 1032 chr3L 12720328 12720360 chr3L 12720412 12720445 9 85 5.5 5.0 5.2 1.5 117 chr3L 12720328 intergenic not near genes chr3L 12720386 intergenic not near genes chr3L 12720445 intergenic not near genes chr3L_9_12720001 chr3L_12720001 RAL-890 1033 chr3L 12801979 12802009 chr3L 12802055 12802085 12 74 2.0 0.5 1.2 5.5 106 chr3L 12801979 intron Atg1 - chr3L 12802032 intron Atg1 - chr3L 12802085 intron Atg1 - chr3L_12_12800001 chr3L_12800001 RAL-890 1034 chr3L 12857994 12858003 chr3L 12858089 12858098 5 95 4.0 1.5 2.8 1.3 104 chr3L 12857994 3` UTR CG32107 - chr3L 12858046 3` UTR CG32107 - chr3L 12858098 3` UTR CG32107 - chr3L_5_12855001 chr3L_12855001 RAL-890 1035 chr3L 12874927 12874948 chr3L 12877219 12877240 jockey 7 2292 4.5 2.5 3.5 1.6 2313 chr3L 12874927 intergenic not near genes chr3L 12876084 intergenic not near genes chr3L 12877240 intergenic not near genes chr3L_7_12875001 chr3L_12875001 RAL-890 1036 chr3L 12919286 12919294 chr3L 12924763 12924778 Rt1c 7 5481 7.0 2.0 4.5 1.3 5492 chr3L 12919286 intergenic not near genes chr3L 12922032 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_7_12920001 chr3L_12920001 RAL-890 1037 chr3L 12929730 12929744 chr3L 12930046 12930060 4 316 1.5 3.0 2.2 1.2 330 chr3L 12929730 intergenic not near genes chr3L 12929895 intergenic not near genes chr3L 12930060 intergenic not near genes chr3L_4_12925001 chr3L_12925001 RAL-890 1038 chr3L 12955133 12955161 chr3L 12955209 12955237 7 74 4.0 7.0 5.5 1.1 104 chr3L 12955133 intergenic CG10752 - chr3L 12955185 intergenic not near genes chr3L 12955237 intergenic not near genes chr3L_7_12955001 chr3L_12955001 RAL-890 1039 chr3L 12957787 12957817 chr3L 12962266 12962299 copia 13 4481 5.0 1.5 3.2 3.1 4512 chr3L 12957787 intergenic not near genes chr3L 12960043 intergenic not near genes chr3L 12962299 intergenic not near genes chr3L_13_12960001 chr3L_12960001 RAL-890 1040 chr3L 12980527 12980548 chr3L 12980615 12980636 8 88 1.0 1.0 1.0 4.0 109 chr3L 12980527 intergenic not near genes chr3L 12980582 intergenic not near genes chr3L 12980636 intergenic not near genes chr3L_8_12980001 chr3L_12980001 RAL-890 1041 chr3L 13057796 13057816 chr3L 13058120 13058139 8 324 6.5 3.0 4.8 1.4 343 chr3L 13057796 intergenic not near genes chr3L 13057968 intergenic not near genes chr3L 13058139 intergenic not near genes chr3L_8_13055001 chr3L_13055001 RAL-890 1042 chr3L 13080023 13080052 chr3L 13080118 13080147 11 96 2.0 3.0 2.5 3.1 124 chr3L 13080023 intergenic not near genes chr3L 13080085 intergenic not near genes chr3L 13080147 intergenic not near genes chr3L_11_13080001 chr3L_13080001 RAL-890 1043 chr3L 13142158 13142176 chr3L 13142271 13142289 6 113 5.0 5.0 5.0 1.0 131 chr3L 13142158 intergenic not near genes chr3L 13142224 intergenic not near genes chr3L 13142289 intergenic not near genes chr3L_6_13140001 chr3L_13140001 RAL-890 1044 chr3L 13408264 13408274 chr3L 13408358 13408371 5 96 3.5 3.0 3.2 1.2 107 chr3L 13408264 intergenic not near genes chr3L 13408318 intergenic not near genes chr3L 13408371 intergenic not near genes chr3L_5_13405001 chr3L_13405001 RAL-890 1045 chr3L 13432289 13432324 chr3L 13432388 13432423 5 99 1.0 6.5 3.8 1.0 134 chr3L 13432289 intron CG10713 - chr3L 13432356 intron CG10713 - chr3L 13432423 intron CG10713 - chr3L_5_13430001 chr3L_13430001 RAL-890 1046 chr3L 13486436 13486466 chr3L 13486682 13486711 7 246 1.5 2.0 1.8 2.5 275 chr3L 13486436 intergenic Abp1 -,Tgi + chr3L 13486574 intergenic Tgi +,Abp1 - chr3L 13486711 intergenic Tgi +,Abp1 - chr3L_7_13485001 chr3L_13485001 RAL-890 1047 chr3L 13525157 13525188 chr3L 13532952 13532984 roo 9 7795 3.5 6.0 4.8 1.6 7827 chr3L 13525157 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532984 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-890 1048 chr3L 13596037 13596054 chr3L 13596152 13596169 5 114 2.5 1.0 1.8 1.8 132 chr3L 13596037 intron bru-3 - chr3L 13596103 intron bru-3 - chr3L 13596169 intron bru-3 - chr3L_5_13595001 chr3L_13595001 RAL-890 1049 chr3L 13677534 13677754 chr3L 13677611 13677910 13 113 2.0 4.5 3.2 3.1 376 chr3L 13677534 intron bru-3 - chr3L 13677722 intron bru-3 - chr3L 13677910 intron bru-3 - chr3L_13_13675001 chr3L_13675001 RAL-890 1050 chr3L 13703435 13703467 chr3L 13703521 13703552 9 85 2.5 5.0 3.8 1.9 117 chr3L 13703435 intron bru-3 - chr3L 13703494 intron bru-3 - chr3L 13703552 intron bru-3 - chr3L_9_13700001 chr3L_13700001 RAL-890 1051 chr3L 13804545 13804574 chr3L 13822831 13822860 roo 15 18286 5.0 3.5 4.2 2.9 18315 chr3L 13804545 intergenic not near genes chr3L 13813702 intergenic not near genes chr3L 13822860 intergenic not near genes chr3L_15_13810001 chr3L_13810001 RAL-890 1052 chr3L 13833975 13834008 chr3L 13834087 13834121 4 112 2.0 2.0 2.0 1.3 146 chr3L 13833975 intergenic not near genes chr3L 13834048 intergenic not near genes chr3L 13834121 intergenic not near genes chr3L_4_13830001 chr3L_13830001 RAL-890 1053 chr3L 13966136 13966166 chr3L 13966225 13966255 9 87 3.0 5.5 4.2 1.7 119 chr3L 13966136 5` UTR,intron Nxf3 +,ssp2 + chr3L 13966196 5` UTR,intron Nxf3 +,ssp2 + chr3L 13966255 5` UTR,intron Nxf3 +,ssp2 + chr3L_9_13965001 chr3L_13965001 RAL-890 1054 chr3L 14144137 14144150 chr3L 14144215 14144228 6 78 0.5 1.5 1.0 3.0 91 chr3L 14144137 intergenic not near genes chr3L 14144182 intergenic not near genes chr3L 14144228 intergenic not near genes chr3L_6_14140001 chr3L_14140001 RAL-890 1055 chr3L 14179630 14179659 chr3L 14179710 14179739 8 80 4.5 7.0 5.8 1.2 109 chr3L 14179630 intergenic not near genes chr3L 14179684 intergenic not near genes chr3L 14179739 intergenic not near genes chr3L_8_14175001 chr3L_14175001 RAL-890 1056 chr3L 14194730 14194740 chr3L 14194805 14194816 6 76 1.5 4.0 2.8 1.6 86 chr3L 14194730 intron nuf + chr3L 14194773 intron nuf + chr3L 14194816 intron nuf + chr3L_6_14190001 chr3L_14190001 RAL-890 1057 chr3L 14245575 14245594 chr3L 14245661 14245688 1360 12 93 1.5 4.5 3.0 3.0 113 chr3L 14245575 3` UTR CR44561 - chr3L 14245632 3` UTR CR44561 - chr3L 14245688 3` UTR CR44561 - chr3L_12_14245001 chr3L_14245001 RAL-890 1058 chr3L 14282586 14282599 chr3L 14282666 14282671 4 78 6.0 4.0 5.0 0.7 85 chr3L 14282586 intron fz + chr3L 14282628 intron fz + chr3L 14282671 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-890 1059 chr3L 14295985 14296014 chr3L 14296471 14296500 roo 8 486 1.5 5.0 3.2 1.9 515 chr3L 14295985 intron fz + chr3L 14296242 intron fz + chr3L 14296500 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-890 1060 chr3L 14326967 14326996 chr3L 14327102 14327132 7 136 1.0 2.0 1.5 2.8 165 chr3L 14326967 intron fz + chr3L 14327050 intron fz + chr3L 14327132 intron fz + chr3L_7_14325001 chr3L_14325001 RAL-890 1061 chr3L 14356523 14356550 chr3L 14356603 14356630 8 80 3.0 3.0 3.0 2.0 107 chr3L 14356523 intron fz + chr3L 14356576 intron fz + chr3L 14356630 intron fz + chr3L_8_14355001 chr3L_14355001 RAL-890 1062 chr3L 14399180 14399192 chr3L 14399269 14399281 6 89 6.5 1.5 4.0 1.2 101 chr3L 14399180 intergenic not near genes chr3L 14399230 intergenic not near genes chr3L 14399281 intergenic not near genes chr3L_6_14395001 chr3L_14395001 RAL-890 1063 chr3L 14411869 14411896 chr3L 14411948 14411975 6 79 4.0 4.5 4.2 1.2 106 chr3L 14411869 intron CG3919 + chr3L 14411922 intron CG3919 + chr3L 14411975 intron CG3919 + chr3L_6_14410001 chr3L_14410001 RAL-890 1064 chr3L 14444735 14444745 chr3L 14444909 14444920 4 175 1.5 10.0 5.8 0.6 185 chr3L 14444735 intron bbg - chr3L 14444828 intron bbg - chr3L 14444920 intron bbg - chr3L_4_14440001 chr3L_14440001 RAL-890 1065 chr3L 14462889 14462897 chr3L 14462977 14462985 4 88 3.5 3.5 3.5 0.9 96 chr3L 14462889 intron bbg - chr3L 14462937 intron bbg - chr3L 14462985 intron bbg - chr3L_4_14460001 chr3L_14460001 RAL-890 1066 chr3L 14468447 14468471 chr3L 14473653 14473677 copia 7 5206 4.0 2.5 3.2 1.7 5230 chr3L 14468447 intron bbg - chr3L 14471062 intron bbg - chr3L 14473677 intron bbg - chr3L_7_14470001 chr3L_14470001 RAL-890 1067 chr3L 14486021 14486045 chr3L 14486102 14486122 7 80 2.5 0.5 1.5 2.8 101 chr3L 14486021 intron bbg - chr3L 14486072 intron bbg - chr3L 14486122 intron bbg - chr3L_7_14485001 chr3L_14485001 RAL-890 1068 chr3L 14522105 14522125 chr3L 14522204 14522224 7 99 3.5 3.5 3.5 1.6 119 chr3L 14522105 intron bbg - chr3L 14522164 intron bbg - chr3L 14522224 intron bbg - chr3L_7_14520001 chr3L_14520001 RAL-890 1069 chr3L 14585610 14585637 chr3L 14585688 14585715 10 78 6.5 5.5 6.0 1.4 105 chr3L 14585610 intron HGTX - chr3L 14585662 intron HGTX - chr3L 14585715 intron HGTX - chr3L_10_14585001 chr3L_14585001 RAL-890 1070 chr3L 14633799 14633807 chr3L 14633895 14633903 5 96 3.5 4.0 3.8 1.0 104 chr3L 14633799 intron dlp + chr3L 14633851 intron dlp + chr3L 14633903 intron dlp + chr3L_5_14630001 chr3L_14630001 RAL-890 1071 chr3L 14725612 14725629 chr3L 14728605 14728623 Doc 4 2994 0.5 6.5 3.5 0.9 3011 chr3L 14725612 intron ome + chr3L 14727118 intron ome + chr3L 14728623 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-890 1072 chr3L 14729512 14729546 chr3L 14729625 14729659 9 113 3.0 1.5 2.2 2.8 147 chr3L 14729512 intron ome + chr3L 14729586 intron ome + chr3L 14729659 intron ome + chr3L_9_14725001 chr3L_14725001 RAL-890 1073 chr3L 14731320 14731348 chr3L 14731735 14731766 6 413 4.5 2.0 3.2 1.4 446 chr3L 14731320 intron ome + chr3L 14731543 intron ome + chr3L 14731766 intron ome + chr3L_6_14730001 chr3L_14730001 RAL-890 1074 chr3L 14731788 14731818 chr3L 14732290 14732300 10 499 2.5 5.0 3.8 2.1 512 chr3L 14731788 intron ome + chr3L 14732044 intron ome + chr3L 14732300 intron ome + chr3L_10_14730001 chr3L_14730001 RAL-890 1075 chr3L 15053433 15053447 chr3L 15053772 15053786 5 338 0.5 5.5 3.0 1.2 353 chr3L 15053433 intron Sytbeta - chr3L 15053610 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053786 intron,3` UTR Sytbeta -,CG18649 - chr3L_5_15050001 chr3L_15050001 RAL-890 1076 chr3L 15055174 15055203 chr3L 15055251 15055272 7 75 7.0 7.5 7.2 0.9 98 chr3L 15055174 intron,exon Sytbeta -,CG13463 + chr3L 15055223 intron,exon Sytbeta -,CG13463 + chr3L 15055272 intron,exon Sytbeta -,CG13463 + chr3L_7_15055001 chr3L_15055001 RAL-890 1077 chr3L 15295766 15295799 chr3L 15298609 15298642 gypsy5 9 2843 3.0 1.0 2.0 3.0 2876 chr3L 15295766 intergenic not near genes chr3L 15297204 intergenic not near genes chr3L 15298642 intergenic Best4 + chr3L_9_15295001 chr3L_15295001 RAL-890 1078 chr3L 15324376 15324400 chr3L 15324461 15324485 11 85 4.0 3.0 3.5 2.4 109 chr3L 15324376 intergenic not near genes chr3L 15324430 intergenic not near genes chr3L 15324485 intergenic not near genes chr3L_11_15320001 chr3L_15320001 RAL-890 1079 chr3L 15348114 15348140 chr3L 15348272 15348298 8 158 1.0 3.0 2.0 2.7 184 chr3L 15348114 intergenic not near genes chr3L 15348206 intergenic not near genes chr3L 15348298 intergenic not near genes chr3L_8_15345001 chr3L_15345001 RAL-890 1080 chr3L 15353389 15353395 chr3L 15353596 15353601 4 206 8.0 20.0 14.0 0.3 212 chr3L 15353389 intergenic not near genes chr3L 15353495 intergenic not near genes chr3L 15353601 intergenic not near genes chr3L_4_15350001 chr3L_15350001 RAL-890 1081 chr3L 15384955 15384989 chr3L 15385083 15385116 5 127 1.5 1.0 1.2 2.3 161 chr3L 15384955 intergenic not near genes chr3L 15385036 intergenic not near genes chr3L 15385116 intergenic not near genes chr3L_5_15385001 chr3L_15385001 RAL-890 1082 chr3L 15393662 15393694 chr3L 15393864 15393896 13 201 3.0 1.5 2.2 4.1 234 chr3L 15393662 intergenic not near genes chr3L 15393779 intergenic not near genes chr3L 15393896 intergenic not near genes chr3L_13_15390001 chr3L_15390001 RAL-890 1083 chr3L 15443587 15443613 chr3L 15443663 15443689 6 76 3.5 2.5 3.0 1.5 102 chr3L 15443587 intergenic not near genes chr3L 15443638 intergenic not near genes chr3L 15443689 intergenic not near genes chr3L_6_15440001 chr3L_15440001 RAL-890 1084 chr3L 15466052 15466135 chr3L 15466134 15466231 9 93 0.0 0.0 0.0 9.0 179 chr3L 15466052 intergenic not near genes chr3L 15466142 intergenic not near genes chr3L 15466231 intergenic not near genes chr3L_9_15465001 chr3L_15465001 RAL-890 1085 chr3L 15482428 15482448 chr3L 15482511 15482539 9 91 4.5 3.5 4.0 1.8 111 chr3L 15482428 intergenic not near genes chr3L 15482484 intergenic not near genes chr3L 15482539 intergenic not near genes chr3L_9_15480001 chr3L_15480001 RAL-890 1086 chr3L 15541615 15541652 chr3L 15541706 15541743 4 91 2.5 1.0 1.8 1.4 128 chr3L 15541615 intron CrebA + chr3L 15541679 intron CrebA + chr3L 15541743 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-890 1087 chr3L 15554919 15554947 chr3L 15556706 15556734 S-element 9 1787 3.5 3.5 3.5 2.0 1815 chr3L 15554919 intron AGO2 + chr3L 15555826 intron AGO2 + chr3L 15556734 intron AGO2 + chr3L_9_15555001 chr3L_15555001 RAL-890 1088 chr3L 15633184 15633213 chr3L 15633264 15633293 7 80 2.5 1.0 1.8 2.5 109 chr3L 15633184 intron comm3 - chr3L 15633238 intron comm3 - chr3L 15633293 intron comm3 - chr3L_7_15630001 chr3L_15630001 RAL-890 1089 chr3L 15643757 15643770 chr3L 15643950 15643964 4 193 5.0 1.5 3.2 1.0 207 chr3L 15643757 intron comm3 - chr3L 15643860 intron comm3 - chr3L 15643964 intron comm3 - chr3L_4_15640001 chr3L_15640001 RAL-890 1090 chr3L 15691415 15691445 chr3L 15691497 15691527 5 77 3.0 3.5 3.2 1.2 112 chr3L 15691415 intron CG34451 - chr3L 15691471 intron CG34451 - chr3L 15691527 intron CG34451 - chr3L_5_15690001 chr3L_15690001 RAL-890 1091 chr3L 15715779 15715806 chr3L 15715856 15715878 5 76 3.0 4.5 3.8 1.0 99 chr3L 15715779 intergenic not near genes chr3L 15715828 intergenic not near genes chr3L 15715878 intergenic not near genes chr3L_5_15715001 chr3L_15715001 RAL-890 1092 chr3L 15744581 15744595 chr3L 15745055 15745070 5 475 19.5 15.5 17.5 0.3 489 chr3L 15744581 intergenic not near genes chr3L 15744826 intergenic not near genes chr3L 15745070 intergenic not near genes chr3L_5_15740001 chr3L_15740001 RAL-890 1093 chr3L 15756879 15756901 chr3L 15756962 15756984 8 83 3.5 0.0 1.8 2.9 105 chr3L 15756879 intergenic not near genes chr3L 15756932 intergenic not near genes chr3L 15756984 intergenic not near genes chr3L_8_15755001 chr3L_15755001 RAL-890 1094 chr3L 15871302 15871324 chr3L 15871505 15871528 6 204 3.0 4.0 3.5 1.3 226 chr3L 15871302 intron pHCl - chr3L 15871415 intron pHCl - chr3L 15871528 intron pHCl - chr3L_6_15870001 chr3L_15870001 RAL-890 1095 chr3L 15914319 15914345 chr3L 15914419 15914430 7 98 6.5 8.0 7.2 0.9 111 chr3L 15914319 intron sff - chr3L 15914374 intron sff - chr3L 15914430 intron sff - chr3L_7_15910001 chr3L_15910001 RAL-890 1096 chr3L 15918108 15918123 chr3L 15918204 15918219 5 96 5.5 8.5 7.0 0.6 111 chr3L 15918108 intron sff - chr3L 15918164 intron sff - chr3L 15918219 intron sff - chr3L_5_15915001 chr3L_15915001 RAL-890 1097 chr3L 15929197 15929224 chr3L 15938344 15938371 roo 9 9147 1.5 1.5 1.5 3.6 9174 chr3L 15929197 intron Pka-C3 - chr3L 15933784 intron Pka-C3 - chr3L 15938371 intron Pka-C3 - chr3L_9_15930001 chr3L_15930001 RAL-890 1098 chr3L 15946499 15946513 chr3L 15946585 15946599 6 86 8.0 0.0 4.0 1.2 100 chr3L 15946499 intron Pka-C3 - chr3L 15946549 intron Pka-C3 - chr3L 15946599 intron Pka-C3 - chr3L_6_15945001 chr3L_15945001 RAL-890 1099 chr3L 16056101 16056137 chr3L 16058338 16058374 9 2236 13.5 11.5 12.5 0.7 2273 chr3L 16056101 intron Mbs + chr3L 16057238 intron Mbs + chr3L 16058374 intron Mbs + chr3L_9_16055001 chr3L_16055001 RAL-890 1100 chr3L 16055751 16055764 chr3L 16059532 16059544 4 3781 19.0 14.5 16.8 0.2 3793 chr3L 16055751 intron Mbs + chr3L 16057648 intron Mbs + chr3L 16059544 intron Mbs + chr3L_4_16055001 chr3L_16055001 RAL-890 1101 chr3L 16060481 16060506 chr3L 16060620 16060645 8 139 5.0 3.0 4.0 1.6 164 chr3L 16060481 intron Mbs + chr3L 16060563 intron Mbs + chr3L 16060645 intron Mbs + chr3L_8_16060001 chr3L_16060001 RAL-890 1102 chr3L 16070748 16070757 chr3L 16070825 16070834 5 77 5.0 3.5 4.2 1.0 86 chr3L 16070748 intron Mbs + chr3L 16070791 intron Mbs + chr3L 16070834 exon Mbs + chr3L_5_16070001 chr3L_16070001 RAL-890 1103 chr3L 16158811 16158837 chr3L 16158896 16158922 4 85 7.0 7.0 7.0 0.5 111 chr3L 16158811 intron CG5151 - chr3L 16158866 intron CG5151 - chr3L 16158922 intron CG5151 - chr3L_4_16155001 chr3L_16155001 RAL-890 1104 chr3L 16162596 16162622 chr3L 16162680 16162706 7 84 4.5 2.5 3.5 1.6 110 chr3L 16162596 intron CG5151 - chr3L 16162651 intron CG5151 - chr3L 16162706 intron CG5151 - chr3L_7_16160001 chr3L_16160001 RAL-890 1105 chr3L 16184106 16184126 chr3L 16188925 16188945 X-element 6 4819 6.0 2.5 4.2 1.2 4839 chr3L 16184106 intergenic not near genes chr3L 16186526 intergenic not near genes chr3L 16188945 intergenic not near genes chr3L_6_16185001 chr3L_16185001 RAL-890 1106 chr3L 16247954 16247963 chr3L 16248038 16248051 4 87 7.5 7.0 7.2 0.5 97 chr3L 16247954 intergenic not near genes chr3L 16248002 intergenic not near genes chr3L 16248051 intergenic not near genes chr3L_4_16245001 chr3L_16245001 RAL-890 1107 chr3L 16340267 16340287 chr3L 16340390 16340411 7 122 6.0 2.5 4.2 1.3 144 chr3L 16340267 intron CG4998 + chr3L 16340339 intron CG4998 + chr3L 16340411 intron CG4998 + chr3L_7_16340001 chr3L_16340001 RAL-890 1108 chr3L 16443847 16443879 chr3L 16446187 16446219 Doc 15 2338 1.0 2.5 1.8 5.4 2372 chr3L 16443847 intron,intron CG33158 +,dsx-c73A - chr3L 16445033 intron,intron CG33158 +,dsx-c73A - chr3L 16446219 intron,intron CG33158 +,dsx-c73A - chr3L_15_16445001 chr3L_16445001 RAL-890 1109 chr3L 16493976 16494007 chr3L 16494493 16494523 jockey 7 515 2.0 4.0 3.0 1.8 547 chr3L 16493976 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494250 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494523 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_7_16490001 chr3L_16490001 RAL-890 1110 chr3L 16506665 16506698 chr3L 16506857 16506891 17 193 3.5 5.5 4.5 3.1 226 chr3L 16506665 intron CG43373 - chr3L 16506778 intron CG43373 - chr3L 16506891 intron CG43373 - chr3L_17_16505001 chr3L_16505001 RAL-890 1111 chr3L 16540052 16540083 chr3L 16540140 16540168 5 87 3.5 2.0 2.8 1.3 116 chr3L 16540052 intron CG43373 - chr3L 16540110 intron CG43373 - chr3L 16540168 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-890 1112 chr3L 16563232 16563253 chr3L 16563313 16563334 5 81 2.0 0.5 1.2 2.3 102 chr3L 16563232 intergenic Mipp1 - chr3L 16563283 intergenic Mipp1 - chr3L 16563334 intergenic Mipp1 - chr3L_5_16560001 chr3L_16560001 RAL-890 1113 chr3L 16616508 16616535 chr3L 16621836 16621863 297 9 5328 4.0 2.5 3.2 2.1 5355 chr3L 16616508 3` UTR Abl - chr3L 16619186 3` UTR Abl - chr3L 16621863 3` UTR Abl - chr3L_9_16615001 chr3L_16615001 RAL-890 1114 chr3L 16652686 16652706 chr3L 16652765 16652785 8 78 3.0 6.5 4.8 1.4 99 chr3L 16652686 intron Baldspot - chr3L 16652736 intron Baldspot - chr3L 16652785 intron Baldspot - chr3L_8_16650001 chr3L_16650001 RAL-890 1115 chr3L 16698330 16698356 chr3L 16698426 16698443 5 94 0.0 1.0 0.5 3.3 113 chr3L 16698330 intron,intron Lasp -,CG43954 - chr3L 16698386 intron,intron Lasp -,CG43954 - chr3L 16698443 intron,intron Lasp -,CG43954 - chr3L_5_16695001 chr3L_16695001 RAL-890 1116 chr3L 16746828 16746852 chr3L 16746919 16746934 8 88 1.0 1.5 1.2 3.6 106 chr3L 16746828 intergenic not near genes chr3L 16746881 intergenic not near genes chr3L 16746934 intergenic not near genes chr3L_8_16745001 chr3L_16745001 RAL-890 1117 chr3L 16800578 16800607 chr3L 16800716 16800745 8 138 8.0 1.0 4.5 1.5 167 chr3L 16800578 intron CG9674 - chr3L 16800662 intron CG9674 - chr3L 16800745 intron CG9674 - chr3L_8_16800001 chr3L_16800001 RAL-890 1118 chr3L 16808039 16808074 chr3L 16808115 16808150 13 74 2.5 0.5 1.5 5.2 111 chr3L 16808039 intron nudC + chr3L 16808094 intron nudC + chr3L 16808150 intron nudC + chr3L_13_16805001 chr3L_16805001 RAL-890 1119 chr3L 16815852 16815883 chr3L 16815937 16815966 7 85 1.0 2.5 1.8 2.5 114 chr3L 16815852 intron,intron nudC +,CG13024 - chr3L 16815909 intron,intron nudC +,CG13024 - chr3L 16815966 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-890 1120 chr3L 16818750 16818776 chr3L 16818826 16818850 5 75 4.0 2.0 3.0 1.2 100 chr3L 16818750 intron,intron nudC +,CG13024 - chr3L 16818800 intron,intron nudC +,CG13024 - chr3L 16818850 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-890 1121 chr3L 16873341 16873362 chr3L 16873443 16873467 4 104 3.5 0.5 2.0 1.3 126 chr3L 16873341 intron Lmpt + chr3L 16873404 intron Lmpt + chr3L 16873467 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-890 1122 chr3L 16886618 16886639 chr3L 16886754 16886770 9 139 2.0 2.5 2.2 2.8 152 chr3L 16886618 intron Lmpt + chr3L 16886694 intron Lmpt + chr3L 16886770 intron Lmpt + chr3L_9_16885001 chr3L_16885001 RAL-890 1123 chr3L 16945734 16945742 chr3L 16954879 16954895 roo 5 9150 6.0 4.5 5.2 0.8 9161 chr3L 16945734 exon Obp73a + chr3L 16950314 intergenic not near genes chr3L 16954895 5` UTR Nc73EF + chr3L_5_16950001 chr3L_16950001 RAL-890 1124 chr3L 16945743 16945753 chr3L 16954878 16954881 roo 6 9140 3.0 3.5 3.2 1.4 9138 chr3L 16945743 exon Obp73a + chr3L 16950312 intergenic not near genes chr3L 16954881 5` UTR Nc73EF + chr3L_6_16950001 chr3L_16950001 RAL-890 1125 chr3L 17027167 17027184 chr3L 17027259 17027276 4 92 1.0 2.0 1.5 1.6 109 chr3L 17027167 intergenic Fit2 +,CG7730 + chr3L 17027222 intergenic Fit2 +,CG7730 + chr3L 17027276 intergenic Fit2 +,CG7730 + chr3L_4_17025001 chr3L_17025001 RAL-890 1126 chr3L 17034935 17034969 chr3L 17035120 17035157 G2 6 188 2.5 1.0 1.8 2.1 222 chr3L 17034935 intergenic not near genes chr3L 17035046 intergenic not near genes chr3L 17035157 intergenic not near genes chr3L_6_17035001 chr3L_17035001 RAL-890 1127 chr3L 17085002 17085032 chr3L 17094151 17094181 roo 8 9149 3.0 4.0 3.5 1.8 9179 chr3L 17085002 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094181 intron Rbp6 - chr3L_8_17085001 chr3L_17085001 RAL-890 1128 chr3L 17098185 17098199 chr3L 17098396 17098410 5 211 1.5 2.5 2.0 1.7 225 chr3L 17098185 intron Rbp6 - chr3L 17098298 intron Rbp6 - chr3L 17098410 intron Rbp6 - chr3L_5_17095001 chr3L_17095001 RAL-890 1129 chr3L 17149171 17149184 chr3L 17149252 17149265 4 81 3.0 0.0 1.5 1.6 94 chr3L 17149171 intron Rbp6 - chr3L 17149218 intron Rbp6 - chr3L 17149265 intron Rbp6 - chr3L_4_17145001 chr3L_17145001 RAL-890 1130 chr3L 17212644 17212679 chr3L 17212726 17212761 14 80 5.5 3.5 4.5 2.5 117 chr3L 17212644 intron Rbp6 - chr3L 17212702 intron Rbp6 - chr3L 17212761 intron Rbp6 - chr3L_14_17210001 chr3L_17210001 RAL-890 1131 chr3L 17237387 17237401 chr3L 17237539 17237553 4 152 2.0 1.5 1.8 1.4 166 chr3L 17237387 intron Rbp6 - chr3L 17237470 intron Rbp6 - chr3L 17237553 intron Rbp6 - chr3L_4_17235001 chr3L_17235001 RAL-890 1132 chr3L 17250924 17250939 chr3L 17251318 17251333 4 394 3.0 0.0 1.5 1.6 409 chr3L 17250924 intron CR43870 + chr3L 17251128 intron CR43870 + chr3L 17251333 intron CR43870 + chr3L_4_17250001 chr3L_17250001 RAL-890 1133 chr3L 17310084 17310093 chr3L 17310173 17310182 5 89 0.0 2.5 1.2 2.3 98 chr3L 17310084 intergenic not near genes chr3L 17310133 intergenic not near genes chr3L 17310182 intergenic not near genes chr3L_5_17310001 chr3L_17310001 RAL-890 1134 chr3L 17395950 17395977 chr3L 17396050 17396077 10 100 3.5 3.5 3.5 2.2 127 chr3L 17395950 intergenic blot - chr3L 17396014 intergenic blot - chr3L 17396077 3` UTR blot - chr3L_10_17395001 chr3L_17395001 RAL-890 1135 chr3L 17510750 17510766 chr3L 17510829 17510850 5 82 1.0 4.0 2.5 1.4 100 chr3L 17510750 exon Oatp74D + chr3L 17510800 intron Oatp74D + chr3L 17510850 intron Oatp74D + chr3L_5_17510001 chr3L_17510001 RAL-890 1136 chr3L 17516990 17517007 chr3L 17524548 17524565 412 4 7558 4.0 5.0 4.5 0.7 7575 chr3L 17516990 intron CG7564 + chr3L 17520778 intron CG7564 + chr3L 17524565 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-890 1137 chr3L 17691990 17691994 chr3L 17692069 17692077 4 82 0.0 4.5 2.2 1.2 87 chr3L 17691990 intron Ccn + chr3L 17692034 intron Ccn + chr3L 17692077 intron Ccn + chr3L_4_17690001 chr3L_17690001 RAL-890 1138 chr3L 17730857 17730883 chr3L 17738187 17738213 mdg1 7 7330 1.0 3.5 2.2 2.2 7356 chr3L 17730857 intron Ccn + chr3L 17734535 intron Ccn + chr3L 17738213 intron Ccn + chr3L_7_17730001 chr3L_17730001 RAL-890 1139 chr3L 17787681 17787693 chr3L 17787773 17787786 4 93 7.0 6.5 6.8 0.5 105 chr3L 17787681 intergenic not near genes chr3L 17787734 intergenic not near genes chr3L 17787786 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-890 1140 chr3L 17789841 17789876 chr3L 17789917 17789952 9 76 1.5 1.5 1.5 3.6 111 chr3L 17789841 intergenic not near genes chr3L 17789896 intergenic not near genes chr3L 17789952 intergenic not near genes chr3L_9_17785001 chr3L_17785001 RAL-890 1141 chr3L 17790603 17790635 chr3L 17790868 17790900 8 265 1.0 3.0 2.0 2.7 297 chr3L 17790603 intergenic CG42815 - chr3L 17790752 intergenic CG42815 - chr3L 17790900 intergenic CG42815 - chr3L_8_17790001 chr3L_17790001 RAL-890 1142 chr3L 17799821 17799842 chr3L 17801597 17801631 S-element 10 1788 1.0 2.5 1.8 3.6 1810 chr3L 17799821 intron NUCB1 - chr3L 17800726 intron NUCB1 - chr3L 17801631 intron NUCB1 - chr3L_10_17800001 chr3L_17800001 RAL-890 1143 chr3L 17836214 17836237 chr3L 17836288 17836314 11 77 4.0 5.0 4.5 2.0 100 chr3L 17836214 intron Grd + chr3L 17836264 intron Grd + chr3L 17836314 intron Grd + chr3L_11_17835001 chr3L_17835001 RAL-890 1144 chr3L 17918380 17918398 chr3L 17921183 17921201 opus 4 2803 4.0 4.0 4.0 0.8 2821 chr3L 17918380 intergenic not near genes chr3L 17919790 intergenic not near genes chr3L 17921201 intergenic not near genes chr3L_4_17915001 chr3L_17915001 RAL-890 1145 chr3L 17991570 17991585 chr3L 17991647 17991663 5 78 5.0 2.5 3.8 1.0 93 chr3L 17991570 intron Eip75B - chr3L 17991616 intron Eip75B - chr3L 17991663 intron Eip75B - chr3L_5_17990001 chr3L_17990001 RAL-890 1146 chr3L 18000673 18000708 chr3L 18000749 18000785 11 77 3.0 2.5 2.8 2.9 112 chr3L 18000673 intron Eip75B - chr3L 18000729 intron Eip75B - chr3L 18000785 intron Eip75B - chr3L_11_18000001 chr3L_18000001 RAL-890 1147 chr3L 18011123 18011126 chr3L 18011290 18011293 4 167 0.5 0.0 0.2 3.3 170 chr3L 18011123 intron Eip75B - chr3L 18011208 intron Eip75B - chr3L 18011293 intron Eip75B - chr3L_4_18010001 chr3L_18010001 RAL-890 1148 chr3L 18020571 18020584 chr3L 18020677 18020690 6 106 1.0 1.0 1.0 3.0 119 chr3L 18020571 intron Eip75B - chr3L 18020630 intron Eip75B - chr3L 18020690 intron Eip75B - chr3L_6_18020001 chr3L_18020001 RAL-890 1149 chr3L 18042241 18042277 chr3L 18042319 18042355 12 76 3.0 3.0 3.0 3.0 114 chr3L 18042241 intron Eip75B - chr3L 18042298 intron Eip75B - chr3L 18042355 intron Eip75B - chr3L_12_18040001 chr3L_18040001 RAL-890 1150 chr3L 18106261 18106280 chr3L 18106379 18106399 6 119 2.0 0.0 1.0 3.0 138 chr3L 18106261 intergenic CG13698 -,mRpS26 + chr3L 18106330 intergenic CG13698 -,mRpS26 + chr3L 18106399 intergenic mRpS26 +,CG13698 - chr3L_6_18105001 chr3L_18105001 RAL-890 1151 chr3L 18107618 18107650 chr3L 18107710 18107743 5 93 0.5 4.5 2.5 1.4 125 chr3L 18107618 intergenic mRpS26 +,CG5147 - chr3L 18107680 intergenic CG5147 -,mRpS26 + chr3L 18107743 intergenic CG5147 -,mRpS26 + chr3L_5_18105001 chr3L_18105001 RAL-890 1152 chr3L 18122626 18122650 chr3L 18122703 18122727 5 76 2.0 3.5 2.8 1.3 101 chr3L 18122626 intergenic not near genes chr3L 18122676 intergenic not near genes chr3L 18122727 intergenic not near genes chr3L_5_18120001 chr3L_18120001 RAL-890 1153 chr3L 18223167 18223185 chr3L 18223250 18223268 4 83 3.0 0.0 1.5 1.6 101 chr3L 18223167 intergenic not near genes chr3L 18223218 intergenic not near genes chr3L 18223268 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-890 1154 chr3L 18262475 18262485 chr3L 18262558 18262568 4 83 3.5 2.5 3.0 1.0 93 chr3L 18262475 intergenic not near genes chr3L 18262522 intergenic not near genes chr3L 18262568 intergenic not near genes chr3L_4_18260001 chr3L_18260001 RAL-890 1155 chr3L 18311800 18311817 chr3L 18311879 18311903 5 84 4.0 2.0 3.0 1.2 103 chr3L 18311800 intergenic not near genes chr3L 18311852 intergenic not near genes chr3L 18311903 intergenic not near genes chr3L_5_18310001 chr3L_18310001 RAL-890 1156 chr3L 18345096 18345124 chr3L 18345173 18345202 4 78 0.0 1.0 0.5 2.7 106 chr3L 18345096 intergenic not near genes chr3L 18345149 intergenic not near genes chr3L 18345202 intergenic not near genes chr3L_4_18345001 chr3L_18345001 RAL-890 1157 chr3L 18359608 18359626 chr3L 18359700 18359718 6 92 2.0 2.0 2.0 2.0 110 chr3L 18359608 intergenic not near genes chr3L 18359663 intergenic not near genes chr3L 18359718 intergenic not near genes chr3L_6_18355001 chr3L_18355001 RAL-890 1158 chr3L 18408732 18408758 chr3L 18408817 18408844 9 85 2.5 1.0 1.8 3.2 112 chr3L 18408732 intergenic not near genes chr3L 18408788 intergenic not near genes chr3L 18408844 intergenic not near genes chr3L_9_18405001 chr3L_18405001 RAL-890 1159 chr3L 18445261 18445280 chr3L 18445339 18445348 5 75 1.5 2.5 2.0 1.7 87 chr3L 18445261 intergenic not near genes chr3L 18445304 intergenic not near genes chr3L 18445348 intergenic not near genes chr3L_5_18445001 chr3L_18445001 RAL-890 1160 chr3L 18456278 18456294 chr3L 18456366 18456381 5 87 6.0 4.0 5.0 0.8 103 chr3L 18456278 intergenic CR44670 - chr3L 18456330 intergenic CR44670 - chr3L 18456381 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-890 1161 chr3L 18506135 18506153 chr3L 18509598 18509616 F-element 5 3463 5.0 5.0 5.0 0.8 3481 chr3L 18506135 intergenic not near genes chr3L 18507876 intergenic not near genes chr3L 18509616 intergenic not near genes chr3L_5_18505001 chr3L_18505001 RAL-890 1162 chr3L 18528628 18528658 chr3L 18537789 18537819 roo 11 9161 3.0 1.5 2.2 3.4 9191 chr3L 18528628 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537819 intergenic not near genes chr3L_11_18530001 chr3L_18530001 RAL-890 1163 chr3L 18546706 18546736 chr3L 18546800 18546829 10 94 1.5 4.0 2.8 2.6 123 chr3L 18546706 intergenic not near genes chr3L 18546768 intergenic not near genes chr3L 18546829 intergenic not near genes chr3L_10_18545001 chr3L_18545001 RAL-890 1164 chr3L 18567031 18567053 chr3L 18567117 18567139 8 86 1.5 4.0 2.8 2.1 108 chr3L 18567031 intron AstC-R1 + chr3L 18567085 intron AstC-R1 + chr3L 18567139 intron AstC-R1 + chr3L_8_18565001 chr3L_18565001 RAL-890 1165 chr3L 18579575 18579598 chr3L 18579703 18579726 7 128 3.0 3.0 3.0 1.8 151 chr3L 18579575 intergenic not near genes chr3L 18579650 intergenic not near genes chr3L 18579726 intergenic not near genes chr3L_7_18575001 chr3L_18575001 RAL-890 1166 chr3L 18593945 18593980 chr3L 18595925 18595960 Doc 6 1980 3.0 0.0 1.5 2.4 2015 chr3L 18593945 intergenic term - chr3L 18594952 intergenic not near genes chr3L 18595960 intergenic CR45389 + chr3L_6_18590001 chr3L_18590001 RAL-890 1167 chr3L 18606747 18606777 chr3L 18606945 18606975 9 195 3.5 4.0 3.8 1.9 228 chr3L 18606747 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606861 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606975 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_9_18605001 chr3L_18605001 RAL-890 1168 chr3L 18679681 18679703 chr3L 18679782 18679809 9 105 4.0 3.0 3.5 2.0 128 chr3L 18679681 intergenic not near genes chr3L 18679745 intergenic not near genes chr3L 18679809 intergenic not near genes chr3L_9_18675001 chr3L_18675001 RAL-890 1169 chr3L 18701134 18701161 chr3L 18701221 18701249 9 87 1.0 4.0 2.5 2.6 115 chr3L 18701134 intergenic not near genes chr3L 18701192 intergenic not near genes chr3L 18701249 intergenic not near genes chr3L_9_18700001 chr3L_18700001 RAL-890 1170 chr3L 18753552 18753565 chr3L 18753631 18753647 4 81 1.5 1.5 1.5 1.6 95 chr3L 18753552 intron ftz-f1 - chr3L 18753600 intron ftz-f1 - chr3L 18753647 intron ftz-f1 - chr3L_4_18750001 chr3L_18750001 RAL-890 1171 chr3L 18772409 18772432 chr3L 18781090 18781113 roo 8 8681 5.5 4.0 4.8 1.4 8704 chr3L 18772409 intron ftz-f1 - chr3L 18776761 intron ftz-f1 - chr3L 18781113 intron ftz-f1 - chr3L_8_18775001 chr3L_18775001 RAL-890 1172 chr3L 18810143 18810172 chr3L 18810220 18810249 9 77 3.5 1.0 2.2 2.8 106 chr3L 18810143 intron CG14073 - chr3L 18810196 intron CG14073 - chr3L 18810249 intron CG14073 - chr3L_9_18810001 chr3L_18810001 RAL-890 1173 chr3L 18833784 18833807 chr3L 18834942 18834970 1360 10 1161 4.5 1.5 3.0 2.5 1186 chr3L 18833784 intron Indy - chr3L 18834377 intron Indy - chr3L 18834970 intron Indy - chr3L_10_18830001 chr3L_18830001 RAL-890 1174 chr3L 18838749 18838767 chr3L 18838847 18838864 4 98 5.5 2.0 3.8 0.8 115 chr3L 18838749 intron Indy - chr3L 18838806 intron Indy - chr3L 18838864 intron Indy - chr3L_4_18835001 chr3L_18835001 RAL-890 1175 chr3L 18932285 18932305 chr3L 18932391 18932411 10 106 3.5 1.5 2.5 2.9 126 chr3L 18932285 intron CG32204 - chr3L 18932348 intron CG32204 - chr3L 18932411 intron CG32204 - chr3L_10_18930001 chr3L_18930001 RAL-890 1176 chr3L 18935835 18935863 chr3L 18935923 18935952 8 89 0.0 3.0 1.5 3.2 117 chr3L 18935835 intron CG32204 - chr3L 18935894 intron CG32204 - chr3L 18935952 intron CG32204 - chr3L_8_18935001 chr3L_18935001 RAL-890 1177 chr3L 18969595 18969630 chr3L 18969690 18969711 8 92 0.5 3.0 1.8 2.9 116 chr3L 18969595 intergenic not near genes chr3L 18969653 intergenic not near genes chr3L 18969711 intergenic not near genes chr3L_8_18965001 chr3L_18965001 RAL-890 1178 chr3L 19008840 19008872 chr3L 19009176 19009209 jockey 7 334 1.5 2.0 1.8 2.5 369 chr3L 19008840 intron nkd - chr3L 19009024 intron nkd - chr3L 19009209 intron nkd - chr3L_7_19005001 chr3L_19005001 RAL-890 1179 chr3L 19115650 19115670 chr3L 19115830 19115843 BS 7 178 3.5 3.0 3.2 1.7 193 chr3L 19115650 intron CG14082 - chr3L 19115746 intron CG14082 - chr3L 19115843 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-890 1180 chr3L 19117045 19117052 chr3L 19124491 19124499 mdg1 4 7447 7.0 2.0 4.5 0.7 7454 chr3L 19117045 intron CG14082 - chr3L 19120772 intron CG14082 - chr3L 19124499 intron CG14082 - chr3L_4_19120001 chr3L_19120001 RAL-890 1181 chr3L 19117053 19117076 chr3L 19124489 19124510 mdg1 11 7439 2.5 2.0 2.2 3.4 7457 chr3L 19117053 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124510 intron CG14082 - chr3L_11_19120001 chr3L_19120001 RAL-890 1182 chr3L 19182391 19182412 chr3L 19182472 19182493 5 81 3.5 3.5 3.5 1.1 102 chr3L 19182391 intron fz2 - chr3L 19182442 intron fz2 - chr3L 19182493 intron fz2 - chr3L_5_19180001 chr3L_19180001 RAL-890 1183 chr3L 19208069 19208090 chr3L 19209430 19209462 Doc 6 1370 2.0 2.5 2.2 1.9 1393 chr3L 19208069 intron fz2 - chr3L 19208766 intron fz2 - chr3L 19209462 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-890 1184 chr3L 19210114 19210130 chr3L 19210210 19210226 6 96 0.0 0.0 0.0 6.0 112 chr3L 19210114 intron fz2 - chr3L 19210170 intron fz2 - chr3L 19210226 intron fz2 - chr3L_6_19210001 chr3L_19210001 RAL-890 1185 chr3L 19269821 19269846 chr3L 19270024 19270040 6 202 2.5 2.5 2.5 1.7 219 chr3L 19269821 intron,exon CG14085 +,CG14088 - chr3L 19269930 intron,exon CG14085 +,CG14088 - chr3L 19270040 intron,exon CG14085 +,CG14088 - chr3L_6_19265001 chr3L_19265001 RAL-890 1186 chr3L 19282263 19282296 chr3L 19282359 19282392 15 96 4.5 3.0 3.8 3.1 129 chr3L 19282263 3` UTR Gbs-76A - chr3L 19282328 3` UTR Gbs-76A - chr3L 19282392 3` UTR Gbs-76A - chr3L_15_19280001 chr3L_19280001 RAL-890 1187 chr3L 19404985 19405007 chr3L 19405062 19405084 6 77 0.5 3.5 2.0 2.0 99 chr3L 19404985 intron CG32206 - chr3L 19405034 intron CG32206 - chr3L 19405084 intron CG32206 - chr3L_6_19405001 chr3L_19405001 RAL-890 1188 chr3L 19427752 19427768 chr3L 19428019 19428044 6 274 0.5 4.0 2.2 1.9 292 chr3L 19427752 intergenic not near genes chr3L 19427898 intergenic not near genes chr3L 19428044 intergenic not near genes chr3L_6_19425001 chr3L_19425001 RAL-890 1189 chr3L 19439183 19439202 chr3L 19439262 19439281 8 78 4.5 3.0 3.8 1.7 98 chr3L 19439183 intergenic not near genes chr3L 19439232 intergenic not near genes chr3L 19439281 intergenic not near genes chr3L_8_19435001 chr3L_19435001 RAL-890 1190 chr3L 19488479 19488502 chr3L 19488559 19488584 7 82 7.0 3.5 5.2 1.1 105 chr3L 19488479 intergenic pncr009:3L -,CG32212 + chr3L 19488532 intergenic pncr009:3L -,CG32212 + chr3L 19488584 intergenic pncr009:3L -,CG32212 + chr3L_7_19485001 chr3L_19485001 RAL-890 1191 chr3L 19527926 19527958 chr3L 19528005 19528036 6 79 3.5 2.5 3.0 1.5 110 chr3L 19527926 intergenic not near genes chr3L 19527981 intergenic not near genes chr3L 19528036 intergenic not near genes chr3L_6_19525001 chr3L_19525001 RAL-890 1192 chr3L 19544237 19544269 chr3L 19544313 19544345 7 76 1.0 2.5 1.8 2.5 108 chr3L 19544237 intergenic CG9279 -,l(3)76BDr - chr3L 19544291 intergenic l(3)76BDr -,CG9279 - chr3L 19544345 3` UTR l(3)76BDr - chr3L_7_19540001 chr3L_19540001 RAL-890 1193 chr3L 19820300 19820316 chr3L 19827849 19827865 412 8 7548 3.0 2.5 2.8 2.1 7565 chr3L 19820300 intron Deaf1 + chr3L 19824082 intron Deaf1 + chr3L 19827865 intron Deaf1 + chr3L_8_19820001 chr3L_19820001 RAL-890 1194 chr3L 19845733 19845761 chr3L 19845820 19845847 6 87 3.0 2.5 2.8 1.6 114 chr3L 19845733 intron Papss + chr3L 19845790 intron Papss + chr3L 19845847 intron Papss + chr3L_6_19845001 chr3L_19845001 RAL-890 1195 chr3L 19848502 19848534 chr3L 19857692 19857724 roo 9 9190 4.0 5.0 4.5 1.6 9222 chr3L 19848502 intron Papss + chr3L 19853113 intron Papss + chr3L 19857724 intron Papss + chr3L_9_19850001 chr3L_19850001 RAL-890 1196 chr3L 19861827 19861853 chr3L 19863615 19863641 S-element 9 1788 3.0 2.0 2.5 2.6 1814 chr3L 19861827 5` UTR CR45433 + chr3L 19862734 intergenic not near genes chr3L 19863641 intergenic not near genes chr3L_9_19860001 chr3L_19860001 RAL-890 1197 chr3L 19961282 19961308 chr3L 19961493 19961519 4 208 2.0 0.5 1.2 1.8 237 chr3L 19961282 intron Ac76E + chr3L 19961400 intron Ac76E + chr3L 19961519 intron Ac76E + chr3L_4_19960001 chr3L_19960001 RAL-890 1198 chr3L 19962953 19962979 chr3L 19963028 19963056 7 77 2.5 4.0 3.2 1.7 103 chr3L 19962953 intron Ac76E + chr3L 19963004 intron Ac76E + chr3L 19963056 intron Ac76E + chr3L_7_19960001 chr3L_19960001 RAL-890 1199 chr3L 19981205 19981234 chr3L 19981284 19981314 11 80 3.0 1.5 2.2 3.4 109 chr3L 19981205 intergenic CG17732 + chr3L 19981260 intergenic CG17732 + chr3L 19981314 intergenic CG17732 + chr3L_11_19980001 chr3L_19980001 RAL-890 1200 chr3L 20086785 20086815 chr3L 20086863 20086893 5 78 3.0 0.0 1.5 2.0 108 chr3L 20086785 intron sNPF-R - chr3L 20086839 intron sNPF-R - chr3L 20086893 intron sNPF-R - chr3L_5_20085001 chr3L_20085001 RAL-890 1201 chr3L 20113474 20113507 chr3L 20113569 20113602 16 95 2.0 2.5 2.2 5.0 128 chr3L 20113474 intergenic not near genes chr3L 20113538 intergenic not near genes chr3L 20113602 intergenic not near genes chr3L_16_20110001 chr3L_20110001 RAL-890 1202 chr3L 20113658 20113689 chr3L 20122914 20122930 roo 11 9256 1.0 3.0 2.0 3.7 9272 chr3L 20113658 intergenic not near genes chr3L 20118294 intergenic not near genes chr3L 20122930 intergenic not near genes chr3L_11_20115001 chr3L_20115001 RAL-890 1203 chr3L 20143078 20143111 chr3L 20143158 20143191 12 80 4.0 1.5 2.8 3.2 113 chr3L 20143078 intergenic not near genes chr3L 20143134 intergenic not near genes chr3L 20143191 intergenic not near genes chr3L_12_20140001 chr3L_20140001 RAL-890 1204 chr3L 20148287 20148298 chr3L 20148377 20148387 4 90 6.5 2.5 4.5 0.7 100 chr3L 20148287 intergenic not near genes chr3L 20148337 intergenic not near genes chr3L 20148387 intergenic not near genes chr3L_4_20145001 chr3L_20145001 RAL-890 1205 chr3L 20158899 20158930 chr3L 20159041 20159072 12 141 0.5 3.5 2.0 4.0 173 chr3L 20158899 intron CG42674 - chr3L 20158986 intron CG42674 - chr3L 20159072 intron CG42674 - chr3L_12_20155001 chr3L_20155001 RAL-890 1206 chr3L 20198913 20198944 chr3L 20200617 20200633 4 1693 21.0 18.0 19.5 0.2 1720 chr3L 20198913 intergenic not near genes chr3L 20199773 intergenic CG42833 + chr3L 20200633 exon obst-F - chr3L_4_20195001 chr3L_20195001 RAL-890 1207 chr3L 20257339 20257360 chr3L 20258459 20258480 pogo 8 1120 7.0 1.5 4.2 1.5 1141 chr3L 20257339 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258480 intron rdgC + chr3L_8_20255001 chr3L_20255001 RAL-890 1208 chr3L 20345614 20345638 chr3L 20345691 20345719 11 80 3.5 2.5 3.0 2.8 105 chr3L 20345614 intergenic Rbbp5 - chr3L 20345666 intergenic Rbbp5 - chr3L 20345719 intergenic Rbbp5 - chr3L_11_20345001 chr3L_20345001 RAL-890 1209 chr3L 20386941 20386962 chr3L 20387042 20387064 13 102 3.0 3.5 3.2 3.1 123 chr3L 20386941 intron fbl + chr3L 20387002 intron fbl + chr3L 20387064 intron fbl + chr3L_13_20385001 chr3L_20385001 RAL-890 1210 chr3L 20462587 20462602 chr3L 20462668 20462683 4 81 3.0 7.0 5.0 0.7 96 chr3L 20462587 intron atk - chr3L 20462635 intron atk - chr3L 20462683 intron atk - chr3L_4_20460001 chr3L_20460001 RAL-890 1211 chr3L 20476753 20476786 chr3L 20484352 20484385 springer 10 7599 2.0 5.0 3.5 2.2 7632 chr3L 20476753 3` UTR isoQC + chr3L 20480569 intergenic not near genes chr3L 20484385 3` UTR ZnT77C - chr3L_10_20480001 chr3L_20480001 RAL-890 1212 chr3L 20487662 20487672 chr3L 20488113 20488123 INE-1 8 451 4.0 3.5 3.8 1.7 461 chr3L 20487662 intron ZnT77C - chr3L 20487892 intron ZnT77C - chr3L 20488123 intron ZnT77C - chr3L_8_20485001 chr3L_20485001 RAL-890 1213 chr3L 20525229 20525230 chr3L 22908066 22908066 5 2382837 4.0 18.5 11.2 0.4 2382837 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_5_21715001 chr3L_21715001 RAL-890 1214 chr3L 20570783 20570809 chr3L 20570861 20570887 5 78 2.0 4.0 3.0 1.2 104 chr3L 20570783 intergenic not near genes chr3L 20570835 intergenic not near genes chr3L 20570887 intergenic not near genes chr3L_5_20570001 chr3L_20570001 RAL-890 1215 chr3L 20710763 20710789 chr3L 20710838 20710858 6 75 1.5 3.5 2.5 1.7 95 chr3L 20710763 intergenic not near genes chr3L 20710810 intergenic not near genes chr3L 20710858 intergenic not near genes chr3L_6_20710001 chr3L_20710001 RAL-890 1216 chr3L 20752619 20752639 chr3L 20755531 20755551 7 2912 2.5 1.0 1.8 2.5 2932 chr3L 20752619 intergenic not near genes chr3L 20754085 intergenic not near genes chr3L 20755551 exon CG33912 - chr3L_7_20750001 chr3L_20750001 RAL-890 1217 chr3L 20821294 20821310 chr3L 20824762 20824779 NOF 5 3469 3.0 5.5 4.2 1.0 3485 chr3L 20821294 intron Pka-R1 + chr3L 20823036 intron Pka-R1 + chr3L 20824779 intron Pka-R1 + chr3L_5_20820001 chr3L_20820001 RAL-890 1218 chr3L 20849272 20849297 chr3L 20849350 20849376 8 79 2.5 6.5 4.5 1.5 104 chr3L 20849272 intron CG32432 - chr3L 20849324 intron CG32432 - chr3L 20849376 intron CG32432 - chr3L_8_20845001 chr3L_20845001 RAL-890 1219 chr3L 21010371 21010393 chr3L 21010478 21010500 6 107 3.0 3.5 3.2 1.4 129 chr3L 21010371 intron skd - chr3L 21010436 intron skd - chr3L 21010500 intron skd - chr3L_6_21010001 chr3L_21010001 RAL-890 1220 chr3L 21110179 21110211 chr3L 21110433 21110465 10 254 2.5 4.0 3.2 2.4 286 chr3L 21110179 intron ko - chr3L 21110322 intron ko - chr3L 21110465 intron ko - chr3L_10_21110001 chr3L_21110001 RAL-890 1221 chr3L 21151869 21151890 chr3L 21156953 21156974 flea 7 5084 1.5 2.5 2.0 2.3 5105 chr3L 21151869 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156974 intron Ac78C - chr3L_7_21150001 chr3L_21150001 RAL-890 1222 chr3L 21158594 21158630 chr3L 21158670 21158706 8 76 2.0 2.5 2.2 2.5 112 chr3L 21158594 intron Ac78C - chr3L 21158650 intron Ac78C - chr3L 21158706 intron Ac78C - chr3L_8_21155001 chr3L_21155001 RAL-890 1223 chr3L 21256539 21256560 chr3L 21256633 21256654 7 92 1.0 4.0 2.5 2.0 115 chr3L 21256539 intron Eip78C + chr3L 21256596 intron Eip78C + chr3L 21256654 intron Eip78C + chr3L_7_21255001 chr3L_21255001 RAL-890 1224 chr3L 21303720 21303739 chr3L 21303807 21303826 8 86 4.0 2.0 3.0 2.0 106 chr3L 21303720 intron CG11309 - chr3L 21303773 intron CG11309 - chr3L 21303826 intron CG11309 - chr3L_8_21300001 chr3L_21300001 RAL-890 1225 chr3L 21306149 21306178 chr3L 21315308 21315337 roo 6 9159 4.0 4.0 4.0 1.2 9188 chr3L 21306149 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310743 intron Pc - chr3L 21315337 3` UTR Pc - chr3L_6_21310001 chr3L_21310001 RAL-890 1226 chr3L 21361727 21361752 chr3L 21362681 21362706 G2 14 954 5.5 4.5 5.0 2.3 979 chr3L 21361727 intergenic CG32440 + chr3L 21362216 intergenic not near genes chr3L 21362706 intergenic not near genes chr3L_14_21360001 chr3L_21360001 RAL-890 1227 chr3L 21372718 21372751 chr3L 21379226 21379259 McClintock 9 6508 0.5 2.5 1.5 3.6 6541 chr3L 21372718 intergenic not near genes chr3L 21375988 intergenic not near genes chr3L 21379259 intergenic not near genes chr3L_9_21375001 chr3L_21375001 RAL-890 1228 chr3L 21407014 21407028 chr3L 21407075 21407107 6 75 2.5 5.5 4.0 1.2 93 chr3L 21407014 intron rgn + chr3L 21407060 intron rgn + chr3L 21407107 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-890 1229 chr3L 21437617 21437634 chr3L 21437724 21437740 6 106 3.5 5.5 4.5 1.1 123 chr3L 21437617 3` UTR Aef1 + chr3L 21437678 3` UTR Aef1 + chr3L 21437740 3` UTR Aef1 + chr3L_6_21435001 chr3L_21435001 RAL-890 1230 chr3L 21498833 21498870 chr3L 21500468 21500506 1360 6 1632 2.0 2.5 2.2 1.9 1673 chr3L 21498833 intron Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500506 intron Glg1 - chr3L_6_21495001 chr3L_21495001 RAL-890 1231 chr3L 21509653 21509687 chr3L 21509730 21509764 10 76 4.5 2.0 3.2 2.4 111 chr3L 21509653 intron M6 + chr3L 21509708 intron M6 + chr3L 21509764 intron M6 + chr3L_10_21505001 chr3L_21505001 RAL-890 1232 chr3L 21637325 21637351 chr3L 21637412 21637437 10 87 4.0 6.5 5.2 1.6 112 chr3L 21637325 intron CG32444 + chr3L 21637381 intron CG32444 + chr3L 21637437 intron CG32444 + chr3L_10_21635001 chr3L_21635001 RAL-890 1233 chr3L 21649781 21649803 chr3L 21650005 21650027 10 222 1.5 3.5 2.5 2.9 246 chr3L 21649781 intron CG43980 + chr3L 21649904 intron CG43980 + chr3L 21650027 intron CG43980 + chr3L_10_21645001 chr3L_21645001 RAL-890 1234 chr3L 21671062 21671079 chr3L 21671210 21671227 9 148 3.5 5.5 4.5 1.6 165 chr3L 21671062 intergenic not near genes chr3L 21671144 intergenic not near genes chr3L 21671227 intergenic not near genes chr3L_9_21670001 chr3L_21670001 RAL-890 1235 chr3L 21749320 21749349 chr3L 21754478 21754508 Doc 5 5157 1.5 3.0 2.2 1.6 5188 chr3L 21749320 intron Syn1 - chr3L 21751914 intron Syn1 - chr3L 21754508 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-890 1236 chr3L 21769058 21769083 chr3L 21769145 21769170 5 86 2.0 3.0 2.5 1.4 112 chr3L 21769058 intron,intron Syn1 -,CG42689 + chr3L 21769114 intron,intron Syn1 -,CG42689 + chr3L 21769170 intron,intron Syn1 -,CG42689 + chr3L_5_21765001 chr3L_21765001 RAL-890 1237 chr3L 21776684 21776867 chr3L 21776771 21776971 6 92 2.5 1.0 1.8 2.1 287 chr3L 21776684 intron,intron CG42689 +,CG42552 + chr3L 21776828 exon,intron CG42689 +,CG42552 + chr3L 21776971 exon,intron CG42689 +,CG42552 + chr3L_6_21775001 chr3L_21775001 RAL-890 1238 chr3L 21836726 21836763 chr3L 21836812 21836849 19 85 1.5 3.0 2.2 5.9 123 chr3L 21836726 3` UTR P5CDh1 - chr3L 21836788 3` UTR P5CDh1 - chr3L 21836849 3` UTR P5CDh1 - chr3L_19_21835001 chr3L_21835001 RAL-890 1239 chr3L 21849498 21849531 chr3L 21849580 21849613 10 82 2.5 2.0 2.2 3.1 115 chr3L 21849498 intron mub + chr3L 21849556 intron mub + chr3L 21849613 intron mub + chr3L_10_21845001 chr3L_21845001 RAL-890 1240 chr3L 21852262 21852275 chr3L 21852354 21852367 5 93 1.5 4.0 2.8 1.3 105 chr3L 21852262 intron mub + chr3L 21852314 intron mub + chr3L 21852367 intron mub + chr3L_5_21850001 chr3L_21850001 RAL-890 1241 chr3L 21874998 21875020 chr3L 21875155 21875177 8 157 0.5 2.5 1.5 3.2 179 chr3L 21874998 intron mub + chr3L 21875088 intron mub + chr3L 21875177 intron mub + chr3L_8_21875001 chr3L_21875001 RAL-890 1242 chr3L 21952451 21952481 chr3L 21953194 21953224 transib1 10 743 3.5 2.0 2.8 2.6 773 chr3L 21952451 intergenic not near genes chr3L 21952838 intergenic not near genes chr3L 21953224 intergenic not near genes chr3L_10_21950001 chr3L_21950001 RAL-890 1243 chr3L 22016367 22016400 chr3L 22016483 22016502 6 114 2.0 3.5 2.8 1.6 135 chr3L 22016367 intergenic not near genes chr3L 22016434 intergenic not near genes chr3L 22016502 intergenic not near genes chr3L_6_22015001 chr3L_22015001 RAL-890 1244 chr3L 22033691 22033722 chr3L 22033769 22033800 16 78 2.5 3.5 3.0 4.0 109 chr3L 22033691 intergenic not near genes chr3L 22033746 intergenic not near genes chr3L 22033800 intergenic not near genes chr3L_16_22030001 chr3L_22030001 RAL-890 1245 chr3L 22046182 22046215 chr3L 22046285 22046318 8 103 2.0 2.5 2.2 2.5 136 chr3L 22046182 intron Oct-TyrR + chr3L 22046250 intron Oct-TyrR + chr3L 22046318 intron Oct-TyrR + chr3L_8_22045001 chr3L_22045001 RAL-890 1246 chr3L 22099675 22099704 chr3L 22105861 22105890 3S18 8 6184 2.0 3.0 2.5 2.3 6215 chr3L 22099675 intergenic not near genes chr3L 22102782 intergenic not near genes chr3L 22105890 intergenic not near genes chr3L_8_22100001 chr3L_22100001 RAL-890 1247 chr3L 22124813 22124835 chr3L 22124896 22124917 5 80 3.5 4.0 3.8 1.0 104 chr3L 22124813 intergenic not near genes chr3L 22124865 intergenic not near genes chr3L 22124917 intergenic not near genes chr3L_5_22120001 chr3L_22120001 RAL-890 1248 chr3L 22137521 22137554 chr3L 22137598 22137631 14 76 1.5 5.5 3.5 3.1 110 chr3L 22137521 intron olf413 + chr3L 22137576 intron olf413 + chr3L 22137631 intron olf413 + chr3L_14_22135001 chr3L_22135001 RAL-890 1249 chr3L 22169456 22169489 chr3L 22169549 22169582 13 92 1.5 2.5 2.0 4.3 126 chr3L 22169456 intron olf413 + chr3L 22169519 intron olf413 + chr3L 22169582 intron olf413 + chr3L_13_22165001 chr3L_22165001 RAL-890 1250 chr3L 22447205 22447233 chr3L 22447290 22447324 12 90 1.5 2.0 1.8 4.3 119 chr3L 22447205 intergenic not near genes chr3L 22447264 intergenic not near genes chr3L 22447324 intergenic not near genes chr3L_12_22445001 chr3L_22445001 RAL-890 1251 chr3L 22554425 22554456 chr3L 22554501 22554532 13 74 4.5 3.5 4.0 2.6 107 chr3L 22554425 intergenic not near genes chr3L 22554478 intergenic not near genes chr3L 22554532 intergenic not near genes chr3L_13_22550001 chr3L_22550001 RAL-890 1252 chr3L 22555771 22555799 chr3L 22563241 22563269 blood 6 7470 3.5 1.0 2.2 1.9 7498 chr3L 22555771 intergenic not near genes chr3L 22559520 intergenic not near genes chr3L 22563269 intergenic not near genes chr3L_6_22555001 chr3L_22555001 RAL-890 1253 chr3L 22617191 22617213 chr3L 22624643 22624664 blood 8 7451 5.0 3.0 4.0 1.6 7473 chr3L 22617191 intron CG14459 - chr3L 22620928 intron CG14459 - chr3L 22624664 intron CG14459 - chr3L_8_22620001 chr3L_22620001 RAL-890 1254 chr3L 22732466 22732494 chr3L 22732547 22732575 8 80 2.5 4.5 3.5 1.8 109 chr3L 22732466 intron CG11367 + chr3L 22732520 intron CG11367 + chr3L 22732575 intron CG11367 + chr3L_8_22730001 chr3L_22730001 RAL-890 1255 chr3L 22756397 22756431 chr3L 22756474 22756508 17 76 1.0 2.0 1.5 6.8 111 chr3L 22756397 intron SPoCk + chr3L 22756452 intron SPoCk + chr3L 22756508 intron SPoCk + chr3L_17_22755001 chr3L_22755001 RAL-890 1256 chr3L 22761403 22761423 chr3L 22766834 22766857 Ivk 9 5434 2.0 8.0 5.0 1.5 5454 chr3L 22761403 intron SPoCk + chr3L 22764130 intron SPoCk + chr3L 22766857 intron SPoCk + chr3L_9_22760001 chr3L_22760001 RAL-890 1257 chr3L 22771638 22771665 chr3L 22771720 22771744 5 77 2.0 2.5 2.2 1.6 106 chr3L 22771638 intron SPoCk + chr3L 22771691 intron SPoCk + chr3L 22771744 intron SPoCk + chr3L_5_22770001 chr3L_22770001 RAL-890 1258 chr3L 22853692 22853722 chr3L 22853777 22853808 9 85 3.0 1.0 2.0 3.0 116 chr3L 22853692 5` UTR CR43426 + chr3L 22853750 5` UTR CR43426 + chr3L 22853808 5` UTR CR43426 + chr3L_9_22850001 chr3L_22850001 RAL-890 1259 chr3L 22865985 22866008 chr3L 22867118 22867141 Doc 9 1133 3.0 3.0 3.0 2.2 1156 chr3L 22865985 intron CG33170 + chr3L 22866563 intron CG33170 + chr3L 22867141 intron CG33170 + chr3L_9_22865001 chr3L_22865001 RAL-890 1260 chr3L 22897197 22897224 chr3L 22897280 22897307 8 83 2.5 1.0 1.8 2.9 110 chr3L 22897197 intergenic not near genes chr3L 22897252 intergenic not near genes chr3L 22897307 intergenic not near genes chr3L_8_22895001 chr3L_22895001 RAL-890 1261 chr3L 19220633 19220638 chr3L 22908066 22908066 5 3687430 17.5 18.5 18.0 0.3 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-890 1262 chr3L 19220633 19220637 chr3L 22908067 22908067 5 3687432 17.0 18.0 17.5 0.3 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-890 1263 chr3L 22989864 22989892 chr3L 22996838 22996866 297 10 6974 4.0 5.0 4.5 1.8 7002 chr3L 22989864 intergenic not near genes chr3L 22993365 intergenic not near genes chr3L 22996866 intergenic not near genes chr3L_10_22990001 chr3L_22990001 RAL-890 1264 chr3L 23042231 23042259 chr3L 23048983 23049012 gypsy6 13 6751 3.0 4.5 3.8 2.7 6781 chr3L 23042231 intergenic not near genes chr3L 23045622 intergenic not near genes chr3L 23049012 intergenic not near genes chr3L_13_23045001 chr3L_23045001 RAL-890 1265 chr3L 23126024 23126056 chr3L 23126122 23126147 15 97 1.0 3.5 2.2 4.7 123 chr3L 23126024 5` UTR CG33217 + chr3L 23126086 5` UTR CG33217 + chr3L 23126147 intron CG33217 + chr3L_15_23125001 chr3L_23125001 RAL-890 1266 chr3L 23205186 23205195 chr3L 23205637 23205646 7 451 5.5 1.0 3.2 1.7 460 chr3L 23205186 intergenic not near genes chr3L 23205416 intergenic not near genes chr3L 23205646 intergenic not near genes chr3L_7_23205001 chr3L_23205001 RAL-890 1267 chr3L 24791898 24791923 chr3L 24796677 24796702 Doc 5 4779 1.5 2.0 1.8 1.8 4804 chr3L 24791898 intergenic not near genes chr3L 24794300 intergenic not near genes chr3L 24796702 intergenic not near genes chr3L_5_24790001 chr3L_24790001 RAL-890 1268 chr3L 25502196 25502223 chr3L 25502299 25502326 4 103 15.5 10.5 13.0 0.3 130 chr3L 25502196 intron CG41343 - chr3L 25502261 intron CG41343 - chr3L 25502326 intron CG41343 - chr3L_4_25500001 chr3L_25500001 RAL-890 1269 chr3L 25635721 25635741 chr3L 25635989 25636013 6 271 2.5 1.5 2.0 2.0 292 chr3L 25635721 intron CG41343 - chr3L 25635867 intron CG41343 - chr3L 25636013 intron CG41343 - chr3L_6_25635001 chr3L_25635001 RAL-890 1270 chr3L 23289003 23289021 chr3L 25843684 25843702 5 2554681 18.0 19.0 18.5 0.3 2554699 chr3L 23289003 intergenic not near genes chr3L 24566352 intergenic not near genes chr3L 25843702 intron CG40178 - chr3L_5_24565001 chr3L_24565001 RAL-890 1271 chr3L 25975454 25975461 chr3L 25975535 25975542 4 83 5.5 1.5 3.5 0.9 88 chr3L 25975454 intron CG40178 - chr3L 25975498 intron CG40178 - chr3L 25975542 intron CG40178 - chr3L_4_25975001 chr3L_25975001 RAL-890 1272 chr3L 26008763 26008790 chr3L 26008910 26008936 11 147 2.5 2.5 2.5 3.1 173 chr3L 26008763 intron CG40178 - chr3L 26008850 intron CG40178 - chr3L 26008936 intron CG40178 - chr3L_11_26005001 chr3L_26005001 RAL-890 1273 chr3L 26717666 26717688 chr3L 26717741 26717763 5 76 2.0 3.0 2.5 1.4 97 chr3L 26717666 intergenic not near genes chr3L 26717714 intergenic not near genes chr3L 26717763 intergenic not near genes chr3L_5_26715001 chr3L_26715001 RAL-890 1274 chr3L 27390696 27390704 chr3L 27390775 27390783 4 78 13.5 18.5 16.0 0.2 87 chr3L 27390696 intron Dbp80 + chr3L 27390740 intron Dbp80 + chr3L 27390783 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-890 1275 chr3R 2446796 2446821 chr3R 2449045 2449070 1360 6 2249 28.5 32.0 30.2 0.2 2274 chr3R 2446796 intergenic not near genes chr3R 2447933 intergenic not near genes chr3R 2449070 intergenic not near genes chr3R_6_2445001 chr3R_2445001 RAL-890 1276 chr3R 2534144 2534161 chr3R 2541709 2541715 4 7564 10.0 18.5 14.2 0.3 7571 chr3R 2534144 intergenic not near genes chr3R 2537930 intergenic not near genes chr3R 2541715 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-890 1277 chr3R 2556880 2556912 chr3R 2557613 2557645 7 733 21.0 10.0 15.5 0.4 765 chr3R 2556880 intron CG41056 - chr3R 2557262 intron CG41056 - chr3R 2557645 intron CG41056 - chr3R_7_2555001 chr3R_2555001 RAL-890 1278 chr3R 3178701 3178712 chr3R 3595185 3595195 5 416484 9.0 13.5 11.2 0.4 416494 chr3R 3178701 intron CG42617 - chr3R 3386948 intergenic not near genes chr3R 3595195 intergenic not near genes chr3R_5_3385001 chr3R_3385001 RAL-890 1279 chr3R 4161546 4161571 chr3R 4161623 4161643 9 76 2.5 3.5 3.0 2.2 97 chr3R 4161546 3` UTR CG40198 - chr3R 4161594 exon CG40198 - chr3R 4161643 exon CG40198 - chr3R_9_4160001 chr3R_4160001 RAL-890 1280 chr3R 4206070 4206103 chr3R 4211645 4211678 mdg3 16 5573 2.5 3.0 2.8 4.2 5608 chr3R 4206070 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211678 intron CG14636 - chr3R_16_4205001 chr3R_4205001 RAL-890 1281 chr3R 4366755 4366790 chr3R 4375138 4375173 roo 13 8383 3.0 6.0 4.5 2.4 8418 chr3R 4366755 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375173 5` UTR CR44922 + chr3R_13_4370001 chr3R_4370001 RAL-890 1282 chr3R 4408408 4408445 chr3R 4412712 4412749 Juan 10 4303 2.0 6.0 4.0 2.0 4341 chr3R 4408408 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412749 intron CG32944 - chr3R_10_4410001 chr3R_4410001 RAL-890 1283 chr3R 4609548 4609578 chr3R 4610711 4610742 1360 14 1163 6.5 3.5 5.0 2.3 1194 chr3R 4609548 intergenic not near genes chr3R 4610145 intergenic not near genes chr3R 4610742 intergenic not near genes chr3R_14_4610001 chr3R_4610001 RAL-890 1284 chr3R 4680716 4680741 chr3R 4680795 4680820 5 79 1.5 3.0 2.2 1.6 104 chr3R 4680716 intron CG43427 + chr3R 4680768 intron CG43427 + chr3R 4680820 5` UTR CG43427 + chr3R_5_4680001 chr3R_4680001 RAL-890 1285 chr3R 4769162 4769191 chr3R 4769240 4769269 11 78 2.5 5.0 3.8 2.3 107 chr3R 4769162 intron,intron atms +,CG44098 - chr3R 4769216 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_11_4765001 chr3R_4765001 RAL-890 1286 chr3R 4861577 4861591 chr3R 4861646 4861660 4 73 1.0 4.0 2.5 1.1 83 chr3R 4861577 intron opa + chr3R 4861618 intron opa + chr3R 4861660 intron opa + chr3R_4_4860001 chr3R_4860001 RAL-890 1287 chr3R 4896290 4896326 chr3R 4896383 4896419 6 93 2.5 2.5 2.5 1.7 129 chr3R 4896290 intergenic CR45580 + chr3R 4896354 intergenic CR45580 + chr3R 4896419 5` UTR CR45580 + chr3R_6_4895001 chr3R_4895001 RAL-890 1288 chr3R 4966014 4966036 chr3R 4966106 4966128 6 91 3.5 2.5 3.0 1.5 114 chr3R 4966014 intron CG1124 + chr3R 4966071 intron CG1124 + chr3R 4966128 intron CG1124 + chr3R_6_4965001 chr3R_4965001 RAL-890 1289 chr3R 5045844 5045875 chr3R 5052946 5052977 HMS-Beagle 10 7102 3.0 2.0 2.5 2.9 7133 chr3R 5045844 intron CR43635 - chr3R 5049410 intergenic not near genes chr3R 5052977 intergenic CR45588 - chr3R_10_5045001 chr3R_5045001 RAL-890 1290 chr3R 5067982 5068008 chr3R 5073499 5073525 mdg3 11 5517 8.5 5.5 7.0 1.4 5543 chr3R 5067982 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073525 intergenic not near genes chr3R_11_5070001 chr3R_5070001 RAL-890 1291 chr3R 5278088 5278121 chr3R 5278168 5278201 14 80 2.5 4.5 3.5 3.1 113 chr3R 5278088 intron mtd - chr3R 5278144 intron mtd - chr3R 5278201 intron mtd - chr3R_14_5275001 chr3R_5275001 RAL-890 1292 chr3R 5306129 5306159 chr3R 5306216 5306246 12 82 0.0 3.5 1.8 4.3 117 chr3R 5306129 intron mtd - chr3R 5306188 intron mtd - chr3R 5306246 intron mtd - chr3R_12_5305001 chr3R_5305001 RAL-890 1293 chr3R 5338398 5338429 chr3R 5343575 5343606 Rt1c 9 5177 3.5 2.5 3.0 2.2 5208 chr3R 5338398 intron mtd - chr3R 5341002 intron mtd - chr3R 5343606 intron mtd - chr3R_9_5340001 chr3R_5340001 RAL-890 1294 chr3R 5385971 5386002 chr3R 5386142 5386169 6 170 1.0 3.5 2.2 1.9 198 chr3R 5385971 intron kkv - chr3R 5386070 intron kkv - chr3R 5386169 intron kkv - chr3R_6_5385001 chr3R_5385001 RAL-890 1295 chr3R 5445961 5445994 chr3R 5452421 5452454 Burdock 7 6460 2.5 6.0 4.2 1.3 6493 chr3R 5445961 intron CG14669 + chr3R 5449208 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_7_5445001 chr3R_5445001 RAL-890 1296 chr3R 5680785 5680819 chr3R 5680868 5680903 8 80 3.0 4.0 3.5 1.8 118 chr3R 5680785 3` UTR Rab23 - chr3R 5680844 3` UTR Rab23 - chr3R 5680903 3` UTR Rab23 - chr3R_8_5680001 chr3R_5680001 RAL-890 1297 chr3R 5688787 5688813 chr3R 5688904 5688934 8 117 1.5 3.5 2.5 2.3 147 chr3R 5688787 intron plx + chr3R 5688860 intron plx + chr3R 5688934 intron plx + chr3R_8_5685001 chr3R_5685001 RAL-890 1298 chr3R 5746015 5746046 chr3R 5746256 5746287 pogo 11 241 1.5 3.0 2.2 3.4 272 chr3R 5746015 3` UTR Madm + chr3R 5746151 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_11_5745001 chr3R_5745001 RAL-890 1299 chr3R 5747012 5747049 chr3R 5753203 5753240 diver 8 6189 1.5 2.5 2.0 2.7 6228 chr3R 5747012 intergenic Madm + chr3R 5750126 intergenic not near genes chr3R 5753240 intergenic CG2091 - chr3R_8_5750001 chr3R_5750001 RAL-890 1300 chr3R 5809114 5809140 chr3R 5809364 5809390 pogo 11 250 3.0 3.0 3.0 2.8 276 chr3R 5809114 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809390 3` UTR CG11000 + chr3R_11_5805001 chr3R_5805001 RAL-890 1301 chr3R 5822378 5822393 chr3R 5823545 5823560 1360 7 1167 4.5 4.5 4.5 1.3 1182 chr3R 5822378 3` UTR CG2023 - chr3R 5822969 3` UTR CG2023 - chr3R 5823560 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-890 1302 chr3R 5927565 5927586 chr3R 5927803 5927824 pogo 8 238 2.5 5.0 3.8 1.7 259 chr3R 5927565 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927824 intron CG34113 - chr3R_8_5925001 chr3R_5925001 RAL-890 1303 chr3R 5987717 5987729 chr3R 5987830 5987842 7 113 3.0 1.5 2.2 2.2 125 chr3R 5987717 intergenic not near genes chr3R 5987780 intergenic not near genes chr3R 5987842 intergenic not near genes chr3R_7_5985001 chr3R_5985001 RAL-890 1304 chr3R 6029970 6029978 chr3R 6030170 6030179 5 201 2.0 3.0 2.5 1.4 209 chr3R 6029970 intergenic not near genes chr3R 6030074 intergenic not near genes chr3R 6030179 intergenic not near genes chr3R_5_6030001 chr3R_6030001 RAL-890 1305 chr3R 6102221 6102250 chr3R 6105380 6105409 7 3159 28.0 24.5 26.2 0.3 3188 chr3R 6102221 3` UTR CR44929 - chr3R 6103815 intron CR44929 - chr3R 6105409 intergenic not near genes chr3R_7_6100001 chr3R_6100001 RAL-890 1306 chr3R 6117417 6117442 chr3R 6117538 6117547 9 118 2.5 2.5 2.5 2.6 130 chr3R 6117417 intergenic not near genes chr3R 6117482 intergenic not near genes chr3R 6117547 intergenic not near genes chr3R_9_6115001 chr3R_6115001 RAL-890 1307 chr3R 6121166 6121183 chr3R 6121383 6121401 BS 6 218 0.0 3.5 1.8 2.1 235 chr3R 6121166 intergenic not near genes chr3R 6121284 intergenic not near genes chr3R 6121401 intergenic not near genes chr3R_6_6120001 chr3R_6120001 RAL-890 1308 chr3R 6158508 6158540 chr3R 6167091 6167123 Tirant 6 8582 2.0 0.5 1.2 2.7 8615 chr3R 6158508 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167123 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-890 1309 chr3R 6206283 6206318 chr3R 6206500 6206535 BS 4 216 1.5 2.5 2.0 1.3 252 chr3R 6206283 exon Osi24 + chr3R 6206409 intron Osi24 + chr3R 6206535 intron Osi24 + chr3R_4_6205001 chr3R_6205001 RAL-890 1310 chr3R 6241330 6241362 chr3R 6241407 6241439 8 77 2.0 1.5 1.8 2.9 109 chr3R 6241330 intergenic not near genes chr3R 6241384 intergenic not near genes chr3R 6241439 intergenic not near genes chr3R_8_6240001 chr3R_6240001 RAL-890 1311 chr3R 6334781 6334813 chr3R 6334879 6334905 4 96 0.5 2.0 1.2 1.8 124 chr3R 6334781 intergenic not near genes chr3R 6334843 intergenic not near genes chr3R 6334905 intergenic Osi19 + chr3R_4_6330001 chr3R_6330001 RAL-890 1312 chr3R 6519120 6519134 chr3R 6519228 6519242 8 108 4.0 3.0 3.5 1.8 122 chr3R 6519120 intergenic not near genes chr3R 6519181 intergenic not near genes chr3R 6519242 intergenic not near genes chr3R_8_6515001 chr3R_6515001 RAL-890 1313 chr3R 6550334 6550350 chr3R 6550411 6550431 6 79 1.5 2.0 1.8 2.1 97 chr3R 6550334 intron dpr11 - chr3R 6550382 intron dpr11 - chr3R 6550431 intron dpr11 - chr3R_6_6550001 chr3R_6550001 RAL-890 1314 chr3R 6551116 6551124 chr3R 6551210 6551218 6 94 6.0 3.5 4.8 1.0 102 chr3R 6551116 intron dpr11 - chr3R 6551167 intron dpr11 - chr3R 6551218 intron dpr11 - chr3R_6_6550001 chr3R_6550001 RAL-890 1315 chr3R 6551125 6551139 chr3R 6551206 6551233 5 91 4.5 3.5 4.0 1.0 108 chr3R 6551125 intron dpr11 - chr3R 6551179 intron dpr11 - chr3R 6551233 intron dpr11 - chr3R_5_6550001 chr3R_6550001 RAL-890 1316 chr3R 6561949 6561967 chr3R 6562033 6562050 5 84 2.0 3.5 2.8 1.3 101 chr3R 6561949 intron dpr11 - chr3R 6562000 intron dpr11 - chr3R 6562050 intron dpr11 - chr3R_5_6560001 chr3R_6560001 RAL-890 1317 chr3R 6639911 6639932 chr3R 6639989 6640010 6 78 1.0 0.0 0.5 4.0 99 chr3R 6639911 intergenic not near genes chr3R 6639960 intergenic not near genes chr3R 6640010 intergenic not near genes chr3R_6_6635001 chr3R_6635001 RAL-890 1318 chr3R 6698006 6698037 chr3R 6698085 6698116 8 79 0.5 1.5 1.0 4.0 110 chr3R 6698006 intergenic not near genes chr3R 6698061 intergenic not near genes chr3R 6698116 intergenic not near genes chr3R_8_6695001 chr3R_6695001 RAL-890 1319 chr3R 6717701 6717707 chr3R 6717838 6717844 4 137 0.0 3.0 1.5 1.6 143 chr3R 6717701 intron pb - chr3R 6717772 intron pb - chr3R 6717844 intron pb - chr3R_4_6715001 chr3R_6715001 RAL-890 1320 chr3R 6737515 6737528 chr3R 6739302 6739315 Doc 5 1787 1.5 4.0 2.8 1.3 1800 chr3R 6737515 intron pb - chr3R 6738415 intron pb - chr3R 6739315 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-890 1321 chr3R 6780447 6780483 chr3R 6780530 6780565 12 83 2.0 3.0 2.5 3.4 118 chr3R 6780447 intergenic not near genes chr3R 6780506 intergenic not near genes chr3R 6780565 intergenic not near genes chr3R_12_6780001 chr3R_6780001 RAL-890 1322 chr3R 6782432 6782469 chr3R 6782511 6782548 7 79 6.5 3.5 5.0 1.2 116 chr3R 6782432 intergenic not near genes chr3R 6782490 intergenic not near genes chr3R 6782548 intergenic not near genes chr3R_7_6780001 chr3R_6780001 RAL-890 1323 chr3R 6807260 6807284 chr3R 6807342 6807366 8 82 2.5 3.0 2.8 2.1 106 chr3R 6807260 intergenic not near genes chr3R 6807313 intergenic not near genes chr3R 6807366 intergenic not near genes chr3R_8_6805001 chr3R_6805001 RAL-890 1324 chr3R 6862220 6862248 chr3R 6862307 6862334 5 87 6.5 2.5 4.5 0.9 114 chr3R 6862220 intergenic not near genes chr3R 6862277 intergenic not near genes chr3R 6862334 intergenic not near genes chr3R_5_6860001 chr3R_6860001 RAL-890 1325 chr3R 6912102 6912132 chr3R 6912213 6912243 10 110 1.5 0.0 0.8 5.6 141 chr3R 6912102 intron Antp - chr3R 6912172 intron Antp - chr3R 6912243 intron Antp - chr3R_10_6910001 chr3R_6910001 RAL-890 1326 chr3R 6923584 6923616 chr3R 6923671 6923702 5 86 2.0 2.5 2.2 1.6 118 chr3R 6923584 intron Antp - chr3R 6923643 intron Antp - chr3R 6923702 intron Antp - chr3R_5_6920001 chr3R_6920001 RAL-890 1327 chr3R 6961185 6961202 chr3R 6961264 6961281 8 79 2.0 3.5 2.8 2.1 96 chr3R 6961185 intron Antp - chr3R 6961233 intron Antp - chr3R 6961281 intron Antp - chr3R_8_6960001 chr3R_6960001 RAL-890 1328 chr3R 7012210 7012234 chr3R 7012283 7012312 9 76 1.0 1.5 1.2 4.1 102 chr3R 7012210 intergenic not near genes chr3R 7012261 intergenic not near genes chr3R 7012312 intergenic not near genes chr3R_9_7010001 chr3R_7010001 RAL-890 1329 chr3R 7051140 7051151 chr3R 7051218 7051230 4 77 1.5 6.0 3.8 0.8 90 chr3R 7051140 intergenic not near genes chr3R 7051185 intergenic not near genes chr3R 7051230 intergenic not near genes chr3R_4_7050001 chr3R_7050001 RAL-890 1330 chr3R 7092781 7092816 chr3R 7093345 7093380 11 562 2.0 2.0 2.0 3.7 599 chr3R 7092781 3` UTR CR43685 - chr3R 7093080 intron CR43685 - chr3R 7093380 3` UTR CR43685 - chr3R_11_7090001 chr3R_7090001 RAL-890 1331 chr3R 7103289 7103314 chr3R 7103365 7103390 8 75 4.5 5.5 5.0 1.3 101 chr3R 7103289 intron Alh - chr3R 7103340 intron Alh - chr3R 7103390 intron Alh - chr3R_8_7100001 chr3R_7100001 RAL-890 1332 chr3R 7126516 7126533 chr3R 7126611 7126628 4 95 1.0 3.0 2.0 1.3 112 chr3R 7126516 3` UTR CG10068 - chr3R 7126572 3` UTR CG10068 - chr3R 7126628 3` UTR CG10068 - chr3R_4_7125001 chr3R_7125001 RAL-890 1333 chr3R 7136819 7136844 chr3R 7136906 7136927 7 86 1.5 3.5 2.5 2.0 108 chr3R 7136819 intron Fer1 + chr3R 7136873 intron Fer1 + chr3R 7136927 intron Fer1 + chr3R_7_7135001 chr3R_7135001 RAL-890 1334 chr3R 7173700 7173707 chr3R 7173758 7173787 4 74 1.0 3.0 2.0 1.3 87 chr3R 7173700 intron sas + chr3R 7173744 intron sas + chr3R 7173787 intron sas + chr3R_4_7170001 chr3R_7170001 RAL-890 1335 chr3R 7217458 7217489 chr3R 7217679 7217710 8 221 2.5 1.0 1.8 2.9 252 chr3R 7217458 intergenic CG14605 -,CG14606 - chr3R 7217584 intergenic CG14605 - chr3R 7217710 3` UTR CG14605 - chr3R_8_7215001 chr3R_7215001 RAL-890 1336 chr3R 7447990 7448011 chr3R 7448068 7448089 6 78 4.5 2.0 3.2 1.4 99 chr3R 7447990 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448089 intergenic not near genes chr3R_6_7445001 chr3R_7445001 RAL-890 1337 chr3R 7511770 7511797 chr3R 7511851 7511878 7 80 1.5 4.5 3.0 1.8 108 chr3R 7511770 intron alpha-Est8 - chr3R 7511824 intron alpha-Est8 - chr3R 7511878 intron alpha-Est8 - chr3R_7_7510001 chr3R_7510001 RAL-890 1338 chr3R 7552972 7552998 chr3R 7553060 7553086 5 88 2.5 2.5 2.5 1.4 114 chr3R 7552972 intergenic not near genes chr3R 7553029 intergenic not near genes chr3R 7553086 intergenic not near genes chr3R_5_7550001 chr3R_7550001 RAL-890 1339 chr3R 7589798 7589827 chr3R 7589919 7589948 7 121 3.5 2.0 2.8 1.8 150 chr3R 7589798 intron CG34127 - chr3R 7589873 intron CG34127 - chr3R 7589948 intron CG34127 - chr3R_7_7585001 chr3R_7585001 RAL-890 1340 chr3R 7625299 7625310 chr3R 7625747 7625758 5 448 3.5 2.5 3.0 1.2 459 chr3R 7625299 intron CG34127 - chr3R 7625528 intron CG34127 - chr3R 7625758 intron CG34127 - chr3R_5_7625001 chr3R_7625001 RAL-890 1341 chr3R 7655005 7655040 chr3R 7655087 7655122 10 82 2.0 2.0 2.0 3.3 117 chr3R 7655005 intergenic not near genes chr3R 7655064 intergenic not near genes chr3R 7655122 intergenic not near genes chr3R_10_7655001 chr3R_7655001 RAL-890 1342 chr3R 7677914 7677944 chr3R 7678027 7678052 7 109 3.0 1.5 2.2 2.2 138 chr3R 7677914 intron Nlg1 + chr3R 7677983 intron Nlg1 + chr3R 7678052 intron Nlg1 + chr3R_7_7675001 chr3R_7675001 RAL-890 1343 chr3R 7694578 7694584 chr3R 7713639 7713645 invader3 4 19061 3.0 3.0 3.0 1.0 19067 chr3R 7694578 3` UTR Nlg1 + chr3R 7704112 intergenic not near genes chr3R 7713645 intergenic not near genes chr3R_4_7700001 chr3R_7700001 RAL-890 1344 chr3R 7729466 7729497 chr3R 7737403 7737435 Stalker2 15 7937 4.5 4.0 4.2 2.9 7969 chr3R 7729466 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737435 intergenic not near genes chr3R_15_7730001 chr3R_7730001 RAL-890 1345 chr3R 7849645 7849673 chr3R 7850811 7850839 1360 12 1167 4.0 4.5 4.2 2.3 1194 chr3R 7849645 intron CG34384 + chr3R 7850242 intron CG34384 + chr3R 7850839 intron CG34384 + chr3R_12_7850001 chr3R_7850001 RAL-890 1346 chr3R 7857641 7857671 chr3R 7857724 7857754 14 83 2.5 3.0 2.8 3.7 113 chr3R 7857641 3` UTR CG17816 - chr3R 7857698 3` UTR CG17816 - chr3R 7857754 3` UTR CG17816 - chr3R_14_7855001 chr3R_7855001 RAL-890 1347 chr3R 7973324 7973344 chr3R 7974386 7974406 1360 5 1062 3.0 5.5 4.2 1.0 1082 chr3R 7973324 intergenic not near genes chr3R 7973865 intergenic not near genes chr3R 7974406 intergenic CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-890 1348 chr3R 8033033 8033057 chr3R 8033122 8033146 11 89 3.5 3.5 3.5 2.4 113 chr3R 8033033 intergenic CG11035 -,unc-45 + chr3R 8033090 intergenic CG11035 -,unc-45 + chr3R 8033146 intergenic CG11035 -,unc-45 + chr3R_11_8030001 chr3R_8030001 RAL-890 1349 chr3R 8090270 8090302 chr3R 8090447 8090478 8 177 2.0 5.0 3.5 1.8 208 chr3R 8090270 5` UTR CR44330 + chr3R 8090374 intergenic CR44330 + chr3R 8090478 intergenic CR44330 + chr3R_8_8090001 chr3R_8090001 RAL-890 1350 chr3R 8094414 8094439 chr3R 8099719 8099744 Transpac 6 5305 1.5 8.5 5.0 1.0 5330 chr3R 8094414 intron CG7900 + chr3R 8097079 intron CG7900 + chr3R 8099744 intron CG7900 + chr3R_6_8095001 chr3R_8095001 RAL-890 1351 chr3R 8101764 8101788 chr3R 8104847 8104872 G2 5 3081 1.5 5.0 3.2 1.2 3108 chr3R 8101764 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104872 3` UTR CG7900 + chr3R_5_8100001 chr3R_8100001 RAL-890 1352 chr3R 8273732 8273769 chr3R 8273819 8273856 7 87 3.0 4.0 3.5 1.6 124 chr3R 8273732 intergenic not near genes chr3R 8273794 intergenic not near genes chr3R 8273856 intergenic not near genes chr3R_7_8270001 chr3R_8270001 RAL-890 1353 chr3R 8304242 8304277 chr3R 8304338 8304373 21 96 5.0 8.5 6.8 2.7 131 chr3R 8304242 3` UTR Sgt1 - chr3R 8304308 3` UTR Sgt1 - chr3R 8304373 3` UTR Sgt1 - chr3R_21_8300001 chr3R_8300001 RAL-890 1354 chr3R 8324281 8324309 chr3R 8325397 8325426 7 1117 18.0 4.0 11.0 0.6 1145 chr3R 8324281 intron Poxm - chr3R 8324854 intron,exon Poxm -,CG7443 + chr3R 8325426 intron Poxm - chr3R_7_8320001 chr3R_8320001 RAL-890 1355 chr3R 8289408 8289421 chr3R 8324631 8324644 4 35223 21.0 9.5 15.2 0.2 35236 chr3R 8289408 3` UTR CG11672 - chr3R 8307026 intergenic tex - chr3R 8324644 intron,intron Poxm -,CG7443 + chr3R_4_8305001 chr3R_8305001 RAL-890 1356 chr3R 8339246 8339247 chr3R 21907534 21907536 9 13568289 11.0 14.5 12.8 0.7 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-890 1357 chr3R 8403006 8403035 chr3R 8412172 8412176 roo 7 9162 4.5 2.0 3.2 1.7 9170 chr3R 8403006 intron CG45263 - chr3R 8407591 intron CG45263 - chr3R 8412176 intron CG45263 - chr3R_7_8405001 chr3R_8405001 RAL-890 1358 chr3R 8534786 8534809 chr3R 8535043 8535066 10 257 0.5 2.5 1.5 4.0 280 chr3R 8534786 intergenic not near genes chr3R 8534926 intergenic not near genes chr3R 8535066 intergenic not near genes chr3R_10_8530001 chr3R_8530001 RAL-890 1359 chr3R 8570486 8570499 chr3R 8575150 8575161 HMS-Beagle 5 4663 1.0 5.0 3.0 1.2 4675 chr3R 8570486 intergenic not near genes chr3R 8572824 intergenic not near genes chr3R 8575161 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-890 1360 chr3R 8601778 8601798 chr3R 8610927 8610933 roo 6 9149 6.5 5.0 5.8 0.9 9155 chr3R 8601778 intron 5-HT2B + chr3R 8606356 intron 5-HT2B + chr3R 8610933 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-890 1361 chr3R 8614792 8614813 chr3R 8614990 8615016 12 201 0.5 2.0 1.2 5.5 224 chr3R 8614792 intron 5-HT2B + chr3R 8614904 intron 5-HT2B + chr3R 8615016 intron 5-HT2B + chr3R_12_8610001 chr3R_8610001 RAL-890 1362 chr3R 8685297 8685311 chr3R 8685397 8685411 7 99 2.5 3.5 3.0 1.8 114 chr3R 8685297 intron CR44937 - chr3R 8685354 intron CR44937 - chr3R 8685411 intron CR44937 - chr3R_7_8685001 chr3R_8685001 RAL-890 1363 chr3R 8707363 8707375 chr3R 8709802 8709816 jockey 5 2441 3.5 3.5 3.5 1.1 2453 chr3R 8707363 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709816 intergenic not near genes chr3R_5_8705001 chr3R_8705001 RAL-890 1364 chr3R 8894870 8894906 chr3R 8896026 8896062 1360 11 1155 2.0 1.0 1.5 4.4 1192 chr3R 8894870 intron pyd - chr3R 8895466 intron pyd - chr3R 8896062 intron pyd - chr3R_11_8895001 chr3R_8895001 RAL-890 1365 chr3R 9066650 9066683 chr3R 9066754 9066787 11 103 3.5 2.5 3.0 2.8 137 chr3R 9066650 3` UTR pum - chr3R 9066718 3` UTR pum - chr3R 9066787 3` UTR pum - chr3R_11_9065001 chr3R_9065001 RAL-890 1366 chr3R 9101837 9101868 chr3R 9101935 9101966 7 98 2.0 4.0 3.0 1.8 129 chr3R 9101837 intron pum - chr3R 9101902 intron pum - chr3R 9101966 intron pum - chr3R_7_9100001 chr3R_9100001 RAL-890 1367 chr3R 9108865 9108884 chr3R 9108941 9108959 9 76 4.0 3.0 3.5 2.0 94 chr3R 9108865 intron pum - chr3R 9108912 intron pum - chr3R 9108959 intron pum - chr3R_9_9105001 chr3R_9105001 RAL-890 1368 chr3R 9149443 9149458 chr3R 9149523 9149538 4 80 7.0 2.5 4.8 0.7 95 chr3R 9149443 intron pum - chr3R 9149490 intron pum - chr3R 9149538 intron pum - chr3R_4_9145001 chr3R_9145001 RAL-890 1369 chr3R 9204251 9204277 chr3R 9204334 9204361 11 81 1.5 1.5 1.5 4.4 110 chr3R 9204251 intron pum - chr3R 9204306 intron pum - chr3R 9204361 intron pum - chr3R_11_9200001 chr3R_9200001 RAL-890 1370 chr3R 9278778 9278811 chr3R 9284038 9284056 Rt1a 10 5258 4.0 1.5 2.8 2.6 5278 chr3R 9278778 intergenic not near genes chr3R 9281417 intergenic not near genes chr3R 9284056 intergenic not near genes chr3R_10_9280001 chr3R_9280001 RAL-890 1371 chr3R 9319589 9319606 chr3R 9320019 9320041 jockey 10 434 4.0 4.5 4.2 1.9 452 chr3R 9319589 intron CG8861 - chr3R 9319815 intron CG8861 - chr3R 9320041 intron CG8861 - chr3R_10_9315001 chr3R_9315001 RAL-890 1372 chr3R 9361820 9361847 chr3R 9362061 9362088 pogo 11 241 3.5 3.5 3.5 2.4 268 chr3R 9361820 3` UTR CG45050 + chr3R 9361954 3` UTR CG45050 + chr3R 9362088 3` UTR CG45050 + chr3R_11_9360001 chr3R_9360001 RAL-890 1373 chr3R 9668680 9668691 chr3R 9668758 9668769 7 78 6.0 1.5 3.8 1.5 89 chr3R 9668680 intron CG9492 - chr3R 9668724 intron CG9492 - chr3R 9668769 intron CG9492 - chr3R_7_9665001 chr3R_9665001 RAL-890 1374 chr3R 9699972 9700004 chr3R 9700061 9700093 1360 17 89 4.0 5.5 4.8 2.9 121 chr3R 9699972 intron Unc-115a - chr3R 9700032 intron Unc-115a - chr3R 9700093 intron Unc-115a - chr3R_17_9700001 chr3R_9700001 RAL-890 1375 chr3R 9898787 9898819 chr3R 9898879 9898911 7 92 2.0 2.0 2.0 2.3 124 chr3R 9898787 intron Glut4EF + chr3R 9898849 intron Glut4EF + chr3R 9898911 intron Glut4EF + chr3R_7_9895001 chr3R_9895001 RAL-890 1376 chr3R 10158486 10158515 chr3R 10158568 10158597 12 82 2.0 3.0 2.5 3.4 111 chr3R 10158486 3` UTR Invadolysin + chr3R 10158542 3` UTR Invadolysin + chr3R 10158597 3` UTR Invadolysin + chr3R_12_10155001 chr3R_10155001 RAL-890 1377 chr3R 10231793 10231812 chr3R 10237370 10237389 mdg3 6 5577 1.5 4.0 2.8 1.6 5596 chr3R 10231793 intron CG42795 + chr3R 10234591 intron CG42795 + chr3R 10237389 intron CG42795 + chr3R_6_10230001 chr3R_10230001 RAL-890 1378 chr3R 10255380 10255385 chr3R 10260817 10260825 I-element 4 5439 5.5 3.0 4.2 0.8 5445 chr3R 10255380 exon Sirt6 - chr3R 10258102 intron Sirt6 - chr3R 10260825 exon Sirt6 - chr3R_4_10255001 chr3R_10255001 RAL-890 1379 chr3R 10277133 10277161 chr3R 10277212 10277241 10 78 1.5 3.0 2.2 3.1 108 chr3R 10277133 intron CG43143 + chr3R 10277187 intron CG43143 + chr3R 10277241 intron CG43143 + chr3R_10_10275001 chr3R_10275001 RAL-890 1380 chr3R 10401894 10401924 chr3R 10402084 10402113 8 190 3.5 2.5 3.0 2.0 219 chr3R 10401894 exon mthl11 + chr3R 10402004 intron mthl11 + chr3R 10402113 exon mthl11 + chr3R_8_10400001 chr3R_10400001 RAL-890 1381 chr3R 10531872 10531899 chr3R 10531953 10531980 7 81 2.5 3.5 3.0 1.8 108 chr3R 10531872 intron hth - chr3R 10531926 intron hth - chr3R 10531980 intron hth - chr3R_7_10530001 chr3R_10530001 RAL-890 1382 chr3R 10535335 10535340 chr3R 10535428 10535433 5 93 1.0 2.5 1.8 1.8 98 chr3R 10535335 intron hth - chr3R 10535384 intron hth - chr3R 10535433 intron hth - chr3R_5_10535001 chr3R_10535001 RAL-890 1383 chr3R 10563459 10563489 chr3R 10563556 10563587 9 93 1.0 3.5 2.2 2.8 128 chr3R 10563459 intron hth - chr3R 10563523 intron hth - chr3R 10563587 intron hth - chr3R_9_10560001 chr3R_10560001 RAL-890 1384 chr3R 10593452 10593462 chr3R 10593517 10593545 4 72 2.0 3.5 2.8 1.1 93 chr3R 10593452 intron hth - chr3R 10593498 intron hth - chr3R 10593545 intron hth - chr3R_4_10590001 chr3R_10590001 RAL-890 1385 chr3R 10651815 10651843 chr3R 10651914 10651942 9 99 3.0 6.0 4.5 1.6 127 chr3R 10651815 intergenic not near genes chr3R 10651878 intergenic not near genes chr3R 10651942 intergenic not near genes chr3R_9_10650001 chr3R_10650001 RAL-890 1386 chr3R 10671538 10671568 chr3R 10671635 10671665 10 97 2.0 1.0 1.5 4.0 127 chr3R 10671538 intergenic not near genes chr3R 10671602 intergenic not near genes chr3R 10671665 intergenic not near genes chr3R_10_10670001 chr3R_10670001 RAL-890 1387 chr3R 10804197 10804208 chr3R 10811728 10811737 17.6 4 7531 0.5 5.5 3.0 1.0 7540 chr3R 10804197 intergenic CG14692 - chr3R 10807967 intergenic not near genes chr3R 10811737 3` UTR CG14693 - chr3R_4_10805001 chr3R_10805001 RAL-890 1388 chr3R 10817217 10817249 chr3R 10817300 10817332 8 82 3.5 2.0 2.8 2.1 115 chr3R 10817217 3` UTR CG4089 + chr3R 10817274 3` UTR CG4089 + chr3R 10817332 3` UTR CG4089 + chr3R_8_10815001 chr3R_10815001 RAL-890 1389 chr3R 10904914 10904936 chr3R 10905118 10905140 5 203 4.0 4.5 4.2 1.0 226 chr3R 10904914 intergenic not near genes chr3R 10905027 intergenic not near genes chr3R 10905140 intergenic not near genes chr3R_5_10905001 chr3R_10905001 RAL-890 1390 chr3R 10906832 10906850 chr3R 10906909 10906923 5 75 3.0 6.0 4.5 0.9 91 chr3R 10906832 intergenic not near genes chr3R 10906878 intergenic not near genes chr3R 10906923 intergenic not near genes chr3R_5_10905001 chr3R_10905001 RAL-890 1391 chr3R 10919685 10919712 chr3R 10919761 10919790 8 77 2.5 3.5 3.0 2.0 105 chr3R 10919685 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919790 intergenic not near genes chr3R_8_10915001 chr3R_10915001 RAL-890 1392 chr3R 10920055 10920078 chr3R 10920123 10920156 5 76 0.5 4.0 2.2 1.6 101 chr3R 10920055 intergenic not near genes chr3R 10920106 intergenic not near genes chr3R 10920156 intergenic not near genes chr3R_5_10920001 chr3R_10920001 RAL-890 1393 chr3R 11048586 11048604 chr3R 11048670 11048688 4 84 3.0 4.5 3.8 0.8 102 chr3R 11048586 3` UTR CG34114 + chr3R 11048637 3` UTR CG34114 + chr3R 11048688 3` UTR CG34114 + chr3R_4_11045001 chr3R_11045001 RAL-890 1394 chr3R 11056897 11056909 chr3R 11056975 11056987 5 78 3.5 0.5 2.0 1.7 90 chr3R 11056897 intergenic not near genes chr3R 11056942 intergenic not near genes chr3R 11056987 intergenic not near genes chr3R_5_11055001 chr3R_11055001 RAL-890 1395 chr3R 11085462 11085491 chr3R 11085539 11085568 12 76 0.5 2.0 1.2 5.5 106 chr3R 11085462 3` UTR CR44940 - chr3R 11085515 intergenic CR44940 - chr3R 11085568 intergenic CR44940 - chr3R_12_11085001 chr3R_11085001 RAL-890 1396 chr3R 11102326 11102345 chr3R 11102407 11102426 6 81 4.5 2.5 3.5 1.3 100 chr3R 11102326 intergenic not near genes chr3R 11102376 intergenic not near genes chr3R 11102426 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-890 1397 chr3R 11174604 11174611 chr3R 11175317 11175323 4 713 11.0 15.5 13.2 0.3 719 chr3R 11174604 exon Ugt86Dj - chr3R 11174964 intron Ugt86Dj - chr3R 11175323 exon Ugt86Dj - chr3R_4_11170001 chr3R_11170001 RAL-890 1398 chr3R 11242260 11242279 chr3R 11242349 11242368 9 88 6.0 6.0 6.0 1.3 108 chr3R 11242260 3` UTR CG17734 - chr3R 11242314 3` UTR CG17734 - chr3R 11242368 3` UTR CG17734 - chr3R_9_11240001 chr3R_11240001 RAL-890 1399 chr3R 11313230 11313259 chr3R 11313319 11313348 14 89 1.5 2.0 1.8 5.0 118 chr3R 11313230 intergenic not near genes chr3R 11313289 intergenic not near genes chr3R 11313348 intergenic not near genes chr3R_14_11310001 chr3R_11310001 RAL-890 1400 chr3R 11379233 11379268 chr3R 11388388 11388423 roo 8 9154 1.5 4.0 2.8 2.1 9190 chr3R 11379233 intron pros + chr3R 11383828 intron pros + chr3R 11388423 intron pros + chr3R_8_11380001 chr3R_11380001 RAL-890 1401 chr3R 11479377 11479406 chr3R 11479631 11479660 7 253 1.5 1.0 1.2 3.2 283 chr3R 11479377 intergenic not near genes chr3R 11479518 intergenic not near genes chr3R 11479660 intergenic not near genes chr3R_7_11475001 chr3R_11475001 RAL-890 1402 chr3R 11485554 11485582 chr3R 11485641 11485668 5 87 1.0 1.5 1.2 2.3 114 chr3R 11485554 intergenic not near genes chr3R 11485611 intergenic not near genes chr3R 11485668 intergenic not near genes chr3R_5_11485001 chr3R_11485001 RAL-890 1403 chr3R 11545897 11545905 chr3R 11546014 11546022 7 117 1.5 3.0 2.2 2.2 125 chr3R 11545897 intergenic not near genes chr3R 11545960 intergenic not near genes chr3R 11546022 intergenic not near genes chr3R_7_11545001 chr3R_11545001 RAL-890 1404 chr3R 11694723 11694754 chr3R 11694816 11694847 12 93 3.0 6.0 4.5 2.2 124 chr3R 11694723 intergenic Fer3 - chr3R 11694785 intergenic Fer3 - chr3R 11694847 intergenic not near genes chr3R_12_11690001 chr3R_11690001 RAL-890 1405 chr3R 11710213 11710222 chr3R 11710290 11710299 4 77 6.5 3.0 4.8 0.7 86 chr3R 11710213 intergenic not near genes chr3R 11710256 intergenic not near genes chr3R 11710299 intergenic not near genes chr3R_4_11710001 chr3R_11710001 RAL-890 1406 chr3R 11834170 11834194 chr3R 11834253 11834266 7 77 2.5 4.0 3.2 1.7 96 chr3R 11834170 intron CG6959 - chr3R 11834218 intron CG6959 - chr3R 11834266 intron CG6959 - chr3R_7_11830001 chr3R_11830001 RAL-890 1407 chr3R 11841073 11841096 chr3R 11846264 11846287 BS 10 5190 2.0 3.5 2.8 2.6 5214 chr3R 11841073 intron CG6959 - chr3R 11843680 intron CG6959 - chr3R 11846287 intron CG6959 - chr3R_10_11840001 chr3R_11840001 RAL-890 1408 chr3R 12022884 12022916 chr3R 12025061 12025092 pogo 11 2177 2.0 5.5 3.8 2.3 2208 chr3R 12022884 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025092 intergenic not near genes chr3R_11_12020001 chr3R_12020001 RAL-890 1409 chr3R 12045176 12045196 chr3R 12045252 12045272 8 76 3.0 3.5 3.2 1.9 96 chr3R 12045176 intergenic not near genes chr3R 12045224 intergenic not near genes chr3R 12045272 intergenic not near genes chr3R_8_12045001 chr3R_12045001 RAL-890 1410 chr3R 12080864 12080896 chr3R 12080941 12080974 7 76 3.0 3.5 3.2 1.7 110 chr3R 12080864 intron CG14741 - chr3R 12080919 intron CG14741 - chr3R 12080974 intron CG14741 - chr3R_7_12080001 chr3R_12080001 RAL-890 1411 chr3R 12111897 12111921 chr3R 12111973 12111997 8 74 3.5 3.5 3.5 1.8 100 chr3R 12111897 intergenic dpr17 + chr3R 12111947 intergenic not near genes chr3R 12111997 intergenic not near genes chr3R_8_12110001 chr3R_12110001 RAL-890 1412 chr3R 12112341 12112363 chr3R 12112436 12112442 4 90 3.0 1.0 2.0 1.3 101 chr3R 12112341 intergenic not near genes chr3R 12112392 intergenic not near genes chr3R 12112442 intergenic not near genes chr3R_4_12110001 chr3R_12110001 RAL-890 1413 chr3R 12116344 12116379 chr3R 12116525 12116560 6 180 2.5 3.0 2.8 1.6 216 chr3R 12116344 intergenic not near genes chr3R 12116452 intergenic not near genes chr3R 12116560 intergenic not near genes chr3R_6_12115001 chr3R_12115001 RAL-890 1414 chr3R 12117517 12117547 chr3R 12117906 12117935 8 387 1.0 2.0 1.5 3.2 418 chr3R 12117517 intergenic not near genes chr3R 12117726 intergenic not near genes chr3R 12117935 intergenic not near genes chr3R_8_12115001 chr3R_12115001 RAL-890 1415 chr3R 12119875 12119904 chr3R 12119974 12119977 4 87 2.5 2.0 2.2 1.2 102 chr3R 12119875 intergenic not near genes chr3R 12119926 intergenic not near genes chr3R 12119977 intergenic not near genes chr3R_4_12115001 chr3R_12115001 RAL-890 1416 chr3R 12165863 12165892 chr3R 12165941 12165970 9 78 3.5 3.0 3.2 2.1 107 chr3R 12165863 intron Cpn - chr3R 12165916 intron Cpn - chr3R 12165970 intron Cpn - chr3R_9_12165001 chr3R_12165001 RAL-890 1417 chr3R 12214351 12214372 chr3R 12214442 12214463 4 91 3.0 2.5 2.8 1.1 112 chr3R 12214351 3` UTR CG4848 - chr3R 12214407 3` UTR CG4848 - chr3R 12214463 3` UTR CG4848 - chr3R_4_12210001 chr3R_12210001 RAL-890 1418 chr3R 12273962 12273988 chr3R 12274288 12274314 12 324 5.5 2.0 3.8 2.5 352 chr3R 12273962 intron svp + chr3R 12274138 intron svp + chr3R 12274314 intron svp + chr3R_12_12270001 chr3R_12270001 RAL-890 1419 chr3R 12314223 12314259 chr3R 12314337 12314373 6 114 5.5 3.0 4.2 1.2 150 chr3R 12314223 intergenic not near genes chr3R 12314298 intergenic not near genes chr3R 12314373 intergenic not near genes chr3R_6_12310001 chr3R_12310001 RAL-890 1420 chr3R 12344129 12344158 chr3R 12344206 12344235 13 77 1.0 3.5 2.2 4.1 106 chr3R 12344129 intergenic not near genes chr3R 12344182 intergenic not near genes chr3R 12344235 intergenic not near genes chr3R_13_12340001 chr3R_12340001 RAL-890 1421 chr3R 12356714 12356744 chr3R 12357006 12357039 5 294 4.0 3.5 3.8 1.0 325 chr3R 12356714 intergenic MBD-R2 - chr3R 12356876 intergenic not near genes chr3R 12357039 intergenic not near genes chr3R_5_12355001 chr3R_12355001 RAL-890 1422 chr3R 12516082 12516094 chr3R 12516177 12516189 8 95 2.5 6.5 4.5 1.5 107 chr3R 12516082 intron Octbeta3R - chr3R 12516136 intron Octbeta3R - chr3R 12516189 intron Octbeta3R - chr3R_8_12515001 chr3R_12515001 RAL-890 1423 chr3R 12535888 12535910 chr3R 12536132 12536154 4 244 6.5 2.5 4.5 0.7 266 chr3R 12535888 intron Octbeta3R - chr3R 12536021 intron Octbeta3R - chr3R 12536154 intron Octbeta3R - chr3R_4_12535001 chr3R_12535001 RAL-890 1424 chr3R 12568495 12568524 chr3R 12568575 12568604 7 79 1.5 1.5 1.5 2.8 109 chr3R 12568495 intron Octbeta2R - chr3R 12568550 intron Octbeta2R - chr3R 12568604 intron Octbeta2R - chr3R_7_12565001 chr3R_12565001 RAL-890 1425 chr3R 12599371 12599404 chr3R 12599454 12599483 10 81 4.0 3.0 3.5 2.2 112 chr3R 12599371 intergenic not near genes chr3R 12599427 intergenic not near genes chr3R 12599483 intergenic not near genes chr3R_10_12595001 chr3R_12595001 RAL-890 1426 chr3R 12872743 12872770 chr3R 12872842 12872869 6 99 2.5 3.0 2.8 1.6 126 chr3R 12872743 intergenic not near genes chr3R 12872806 intergenic not near genes chr3R 12872869 intergenic not near genes chr3R_6_12870001 chr3R_12870001 RAL-890 1427 chr3R 12876952 12876987 chr3R 12877035 12877070 8 82 1.0 3.5 2.2 2.5 118 chr3R 12876952 intergenic not near genes chr3R 12877011 intergenic not near genes chr3R 12877070 intergenic not near genes chr3R_8_12875001 chr3R_12875001 RAL-890 1428 chr3R 12880901 12880931 chr3R 12880980 12881007 10 79 0.5 1.5 1.0 5.0 106 chr3R 12880901 intergenic not near genes chr3R 12880954 intergenic not near genes chr3R 12881007 intergenic not near genes chr3R_10_12880001 chr3R_12880001 RAL-890 1429 chr3R 12914730 12914751 chr3R 12914875 12914894 5 145 1.5 2.5 2.0 1.7 164 chr3R 12914730 intergenic not near genes chr3R 12914812 intergenic not near genes chr3R 12914894 intergenic not near genes chr3R_5_12910001 chr3R_12910001 RAL-890 1430 chr3R 12920165 12920179 chr3R 12925368 12925381 copia 5 5203 2.0 5.5 3.8 1.0 5216 chr3R 12920165 intron beat-Vb + chr3R 12922773 intron beat-Vb + chr3R 12925381 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-890 1431 chr3R 12933202 12933225 chr3R 12933290 12933313 8 88 2.0 4.5 3.2 1.9 111 chr3R 12933202 intron beat-Vb + chr3R 12933258 intron beat-Vb + chr3R 12933313 intron beat-Vb + chr3R_8_12930001 chr3R_12930001 RAL-890 1432 chr3R 12960555 12960581 chr3R 12960634 12960665 13 85 1.5 1.5 1.5 5.2 110 chr3R 12960555 intron grsm - chr3R 12960610 intron grsm - chr3R 12960665 intron grsm - chr3R_13_12960001 chr3R_12960001 RAL-890 1433 chr3R 12972559 12972583 chr3R 12972698 12972722 9 139 3.0 1.0 2.0 3.0 163 chr3R 12972559 intron CG7381 - chr3R 12972640 intron CG7381 - chr3R 12972722 intron CG7381 - chr3R_9_12970001 chr3R_12970001 RAL-890 1434 chr3R 12974711 12974730 chr3R 12974864 12974883 6 153 5.5 2.0 3.8 1.2 172 chr3R 12974711 intron CG7381 - chr3R 12974797 intron CG7381 - chr3R 12974883 intron CG7381 - chr3R_6_12970001 chr3R_12970001 RAL-890 1435 chr3R 13061878 13061906 chr3R 13061973 13062000 4 94 5.5 0.5 3.0 1.0 122 chr3R 13061878 intron sim + chr3R 13061939 intron sim + chr3R 13062000 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-890 1436 chr3R 13135826 13135849 chr3R 13138001 13138024 pogo 7 2175 6.5 1.0 3.8 1.5 2198 chr3R 13135826 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136925 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138024 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13135001 chr3R_13135001 RAL-890 1437 chr3R 13143032 13143066 chr3R 13148609 13148643 mdg3 5 5566 1.5 2.0 1.8 1.8 5611 chr3R 13143032 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145838 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148643 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-890 1438 chr3R 13195966 13195982 chr3R 13196058 13196077 7 93 2.0 2.0 2.0 2.3 111 chr3R 13195966 intergenic not near genes chr3R 13196022 intergenic not near genes chr3R 13196077 intergenic not near genes chr3R_7_13195001 chr3R_13195001 RAL-890 1439 chr3R 13248651 13248681 chr3R 13248750 13248780 14 99 1.5 3.5 2.5 4.0 129 chr3R 13248651 intron Ace - chr3R 13248716 intron Ace - chr3R 13248780 intron Ace - chr3R_14_13245001 chr3R_13245001 RAL-890 1440 chr3R 13252270 13252295 chr3R 13252346 13252352 8 73 1.5 3.0 2.2 2.5 82 chr3R 13252270 intron Ace - chr3R 13252311 intron Ace - chr3R 13252352 intron Ace - chr3R_8_13250001 chr3R_13250001 RAL-890 1441 chr3R 13294011 13294041 chr3R 13294175 13294205 10 164 1.0 4.0 2.5 2.9 194 chr3R 13294011 intergenic not near genes chr3R 13294108 intergenic not near genes chr3R 13294205 intergenic not near genes chr3R_10_13290001 chr3R_13290001 RAL-890 1442 chr3R 13418665 13418683 chr3R 13418741 13418759 6 76 3.0 0.5 1.8 2.1 94 chr3R 13418665 intergenic not near genes chr3R 13418712 intergenic not near genes chr3R 13418759 intergenic not near genes chr3R_6_13415001 chr3R_13415001 RAL-890 1443 chr3R 13435387 13435408 chr3R 13435562 13435583 9 175 2.5 3.0 2.8 2.4 196 chr3R 13435387 intergenic yrt - chr3R 13435485 intergenic not near genes chr3R 13435583 intergenic not near genes chr3R_9_13435001 chr3R_13435001 RAL-890 1444 chr3R 13444440 13444451 chr3R 13444519 13444531 4 80 3.0 2.0 2.5 1.1 91 chr3R 13444440 intergenic CR45679 - chr3R 13444486 intergenic CR45679 - chr3R 13444531 intergenic CR45679 - chr3R_4_13440001 chr3R_13440001 RAL-890 1445 chr3R 13517223 13517231 chr3R 13520039 13520048 jockey 5 2817 4.0 0.0 2.0 1.7 2825 chr3R 13517223 intergenic not near genes chr3R 13518636 intergenic not near genes chr3R 13520048 intergenic not near genes chr3R_5_13515001 chr3R_13515001 RAL-890 1446 chr3R 13599056 13599083 chr3R 13599136 13599163 8 80 2.5 3.0 2.8 2.1 107 chr3R 13599056 intergenic not near genes chr3R 13599110 intergenic not near genes chr3R 13599163 intergenic not near genes chr3R_8_13595001 chr3R_13595001 RAL-890 1447 chr3R 13617676 13617703 chr3R 13617783 13617809 7 107 3.5 4.0 3.8 1.5 133 chr3R 13617676 intergenic CR45680 - chr3R 13617742 intergenic CR45680 - chr3R 13617809 3` UTR CR45680 - chr3R_7_13615001 chr3R_13615001 RAL-890 1448 chr3R 13623960 13623990 chr3R 13624054 13624084 5 94 2.0 2.5 2.2 1.6 124 chr3R 13623960 intergenic not near genes chr3R 13624022 intergenic not near genes chr3R 13624084 intergenic not near genes chr3R_5_13620001 chr3R_13620001 RAL-890 1449 chr3R 13659724 13659843 chr3R 13659830 13659932 6 103 0.0 0.0 0.0 6.0 208 chr3R 13659724 intron Hrb87F - chr3R 13659828 intron Hrb87F - chr3R 13659932 intron Hrb87F - chr3R_6_13655001 chr3R_13655001 RAL-890 1450 chr3R 13672947 13672978 chr3R 13673025 13673056 14 78 1.5 4.5 3.0 3.5 109 chr3R 13672947 intron Task6 - chr3R 13673002 intron Task6 - chr3R 13673056 intron Task6 - chr3R_14_13670001 chr3R_13670001 RAL-890 1451 chr3R 13693028 13693028 chr3R 21907534 21907535 5 8214507 23.0 14.5 18.8 0.3 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_5_17800001 chr3R_17800001 RAL-890 1452 chr3R 13763303 13763337 chr3R 13763383 13763417 11 79 3.5 0.5 2.0 3.7 114 chr3R 13763303 3` UTR CG34383 + chr3R 13763360 3` UTR CG34383 + chr3R 13763417 3` UTR CG34383 + chr3R_11_13760001 chr3R_13760001 RAL-890 1453 chr3R 13789532 13789559 chr3R 13789612 13789639 8 80 0.5 1.0 0.8 4.4 107 chr3R 13789532 intergenic not near genes chr3R 13789586 intergenic not near genes chr3R 13789639 intergenic not near genes chr3R_8_13785001 chr3R_13785001 RAL-890 1454 chr3R 13803896 13803902 chr3R 13804117 13804123 5 221 0.0 0.0 0.0 5.0 227 chr3R 13803896 intergenic not near genes chr3R 13804010 intergenic not near genes chr3R 13804123 intergenic not near genes chr3R_5_13800001 chr3R_13800001 RAL-890 1455 chr3R 13835602 13835617 chr3R 13835694 13835709 10 92 0.0 3.0 1.5 4.0 107 chr3R 13835602 intron Nsf2 - chr3R 13835656 intron Nsf2 - chr3R 13835709 intron Nsf2 - chr3R_10_13835001 chr3R_13835001 RAL-890 1456 chr3R 13846184 13846209 chr3R 13846279 13846289 12 94 1.5 2.5 2.0 4.0 105 chr3R 13846184 intergenic not near genes chr3R 13846236 intergenic not near genes chr3R 13846289 intergenic not near genes chr3R_12_13845001 chr3R_13845001 RAL-890 1457 chr3R 13877104 13877124 chr3R 13877214 13877234 6 110 7.0 3.0 5.0 1.0 130 chr3R 13877104 5` UTR E5 - chr3R 13877169 5` UTR E5 - chr3R 13877234 intergenic E5 - chr3R_6_13875001 chr3R_13875001 RAL-890 1458 chr3R 13975373 13975409 chr3R 13975453 13975488 15 80 2.0 0.5 1.2 6.8 115 chr3R 13975373 intron rdx - chr3R 13975430 intron rdx - chr3R 13975488 intron rdx - chr3R_15_13975001 chr3R_13975001 RAL-890 1459 chr3R 14180810 14180828 chr3R 14185575 14185593 F-element 7 4764 7.0 1.0 4.0 1.4 4783 chr3R 14180810 intron Dop1R1 - chr3R 14183202 intron Dop1R1 - chr3R 14185593 intron Dop1R1 - chr3R_7_14180001 chr3R_14180001 RAL-890 1460 chr3R 14194428 14194458 chr3R 14203576 14203607 roo 10 9149 2.5 3.5 3.0 2.5 9179 chr3R 14194428 intron Dop1R1 - chr3R 14199018 intron Dop1R1 - chr3R 14203607 intron Dop1R1 - chr3R_10_14195001 chr3R_14195001 RAL-890 1461 chr3R 14218176 14218206 chr3R 14218273 14218302 7 97 3.5 3.0 3.2 1.7 126 chr3R 14218176 3` UTR CG31326 - chr3R 14218239 3` UTR CG31326 - chr3R 14218302 3` UTR CG31326 - chr3R_7_14215001 chr3R_14215001 RAL-890 1462 chr3R 14235701 14235714 chr3R 14235783 14235796 4 82 3.0 3.0 3.0 1.0 95 chr3R 14235701 intergenic not near genes chr3R 14235748 intergenic not near genes chr3R 14235796 intergenic not near genes chr3R_4_14235001 chr3R_14235001 RAL-890 1463 chr3R 14246396 14246414 chr3R 14247888 14247910 jockey 7 1494 3.5 4.5 4.0 1.4 1514 chr3R 14246396 intergenic not near genes chr3R 14247153 intergenic not near genes chr3R 14247910 intergenic not near genes chr3R_7_14245001 chr3R_14245001 RAL-890 1464 chr3R 14327692 14327726 chr3R 14327774 14327808 14 81 2.0 1.0 1.5 5.6 116 chr3R 14327692 3` UTR CG3321 + chr3R 14327750 intergenic CG3321 +,spn-B + chr3R 14327808 intergenic CG3321 +,spn-B + chr3R_14_14325001 chr3R_14325001 RAL-890 1465 chr3R 14364064 14364085 chr3R 14364140 14364160 4 75 4.5 2.5 3.5 0.9 96 chr3R 14364064 intron NK7.1 - chr3R 14364112 intron NK7.1 - chr3R 14364160 intron NK7.1 - chr3R_4_14360001 chr3R_14360001 RAL-890 1466 chr3R 14440726 14440752 chr3R 14440802 14440828 8 76 4.0 5.0 4.5 1.5 102 chr3R 14440726 intron cv-c - chr3R 14440777 intron cv-c - chr3R 14440828 intron cv-c - chr3R_8_14440001 chr3R_14440001 RAL-890 1467 chr3R 14458731 14458755 chr3R 14458808 14458832 8 77 2.0 2.0 2.0 2.7 101 chr3R 14458731 intron cv-c - chr3R 14458782 intron cv-c - chr3R 14458832 intron cv-c - chr3R_8_14455001 chr3R_14455001 RAL-890 1468 chr3R 14497402 14497435 chr3R 14497483 14497516 5 80 5.5 0.0 2.8 1.3 114 chr3R 14497402 intron CR44177 + chr3R 14497459 intron CR44177 + chr3R 14497516 intron CR44177 + chr3R_5_14495001 chr3R_14495001 RAL-890 1469 chr3R 14612443 14612467 chr3R 14612563 14612586 5 120 1.0 1.0 1.0 2.5 143 chr3R 14612443 intron CG14853 + chr3R 14612514 intron CG14853 + chr3R 14612586 intron CG14853 + chr3R_5_14610001 chr3R_14610001 RAL-890 1470 chr3R 14662317 14662340 chr3R 14662398 14662421 8 81 2.5 5.0 3.8 1.7 104 chr3R 14662317 intron Rad17 - chr3R 14662369 intron Rad17 - chr3R 14662421 exon Rad17 - chr3R_8_14660001 chr3R_14660001 RAL-890 1471 chr3R 14704387 14704415 chr3R 14704463 14704491 7 77 2.5 2.5 2.5 2.0 104 chr3R 14704387 intron kibra - chr3R 14704439 intron kibra - chr3R 14704491 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-890 1472 chr3R 14726522 14726537 chr3R 14726626 14726642 4 105 1.0 1.5 1.2 1.8 120 chr3R 14726522 intron CG7530 - chr3R 14726582 intron CG7530 - chr3R 14726642 intron CG7530 - chr3R_4_14725001 chr3R_14725001 RAL-890 1473 chr3R 15026333 15026342 chr3R 15026419 15026428 5 86 1.5 1.5 1.5 2.0 95 chr3R 15026333 intergenic not near genes chr3R 15026380 intergenic not near genes chr3R 15026428 intergenic not near genes chr3R_5_15025001 chr3R_15025001 RAL-890 1474 chr3R 15048352 15048380 chr3R 15048474 15048502 9 122 2.5 2.0 2.2 2.8 150 chr3R 15048352 intergenic not near genes chr3R 15048427 intergenic not near genes chr3R 15048502 intergenic not near genes chr3R_9_15045001 chr3R_15045001 RAL-890 1475 chr3R 15059276 15059481 chr3R 15059470 15059568 BS 4 140 0.0 2.0 1.0 2.0 292 chr3R 15059276 intron dpr9 - chr3R 15059422 intron dpr9 - chr3R 15059568 intron dpr9 - chr3R_4_15055001 chr3R_15055001 RAL-890 1476 chr3R 15079806 15079831 chr3R 15080047 15080072 pogo 10 241 7.5 1.5 4.5 1.8 266 chr3R 15079806 3` UTR CG6966 - chr3R 15079939 3` UTR CG6966 - chr3R 15080072 3` UTR CG6966 - chr3R_10_15075001 chr3R_15075001 RAL-890 1477 chr3R 15084156 15084172 chr3R 15084286 15084288 6 129 4.5 2.5 3.5 1.3 132 chr3R 15084156 intron CG6966 - chr3R 15084222 intron CG6966 - chr3R 15084288 intron CG6966 - chr3R_6_15080001 chr3R_15080001 RAL-890 1478 chr3R 15102499 15102525 chr3R 15109754 15109780 412 7 7255 3.5 3.0 3.2 1.7 7281 chr3R 15102499 intron CG42788 - chr3R 15106140 intron CG42788 - chr3R 15109780 intron CG42788 - chr3R_7_15105001 chr3R_15105001 RAL-890 1479 chr3R 15114918 15114948 chr3R 15114994 15115025 4 76 1.0 2.5 1.8 1.4 107 chr3R 15114918 intron CG42788 - chr3R 15114972 intron CG42788 - chr3R 15115025 intron CG42788 - chr3R_4_15110001 chr3R_15110001 RAL-890 1480 chr3R 15127787 15127810 chr3R 15127867 15127890 9 80 0.5 5.0 2.8 2.4 103 chr3R 15127787 intron CG42788 - chr3R 15127838 intron CG42788 - chr3R 15127890 intron CG42788 - chr3R_9_15125001 chr3R_15125001 RAL-890 1481 chr3R 15132060 15132075 chr3R 15135120 15135135 Juan 8 3060 7.5 5.5 6.5 1.1 3075 chr3R 15132060 intergenic CG42788 - chr3R 15133598 intergenic not near genes chr3R 15135135 intergenic CG6912 - chr3R_8_15130001 chr3R_15130001 RAL-890 1482 chr3R 15162540 15162562 chr3R 15167308 15167330 F-element 10 4767 2.5 0.0 1.2 4.5 4790 chr3R 15162540 intron Gyc88E + chr3R 15164935 intron Gyc88E + chr3R 15167330 intron Gyc88E + chr3R_10_15160001 chr3R_15160001 RAL-890 1483 chr3R 15416251 15416282 chr3R 15416327 15416362 14 78 2.0 2.0 2.0 4.7 111 chr3R 15416251 3` UTR Atx2 + chr3R 15416306 3` UTR Atx2 + chr3R 15416362 3` UTR Atx2 + chr3R_14_15415001 chr3R_15415001 RAL-890 1484 chr3R 15505626 15505659 chr3R 15505702 15505707 4 68 3.5 3.5 3.5 0.9 81 chr3R 15505626 intergenic not near genes chr3R 15505666 intergenic not near genes chr3R 15505707 intergenic not near genes chr3R_4_15505001 chr3R_15505001 RAL-890 1485 chr3R 15601165 15601193 chr3R 15608684 15608714 412 12 7521 4.0 3.0 3.5 2.7 7549 chr3R 15601165 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608714 intergenic not near genes chr3R_12_15600001 chr3R_15600001 RAL-890 1486 chr3R 15646792 15646800 chr3R 15646875 15646882 4 83 1.0 2.0 1.5 1.6 90 chr3R 15646792 intergenic not near genes chr3R 15646837 intergenic not near genes chr3R 15646882 intergenic not near genes chr3R_4_15645001 chr3R_15645001 RAL-890 1487 chr3R 15691180 15691326 chr3R 15691285 15691412 16 94 0.0 0.0 0.0 16.0 232 chr3R 15691180 intergenic not near genes chr3R 15691296 intergenic not near genes chr3R 15691412 intergenic not near genes chr3R_16_15690001 chr3R_15690001 RAL-890 1488 chr3R 15715821 15715832 chr3R 15715906 15715917 5 85 2.5 7.0 4.8 0.9 96 chr3R 15715821 exon CG31294 - chr3R 15715869 intron CG31294 - chr3R 15715917 intron CG31294 - chr3R_5_15715001 chr3R_15715001 RAL-890 1489 chr3R 15725562 15725596 chr3R 15725831 15725863 4 267 0.0 2.0 1.0 2.0 301 chr3R 15725562 intergenic not near genes chr3R 15725712 intergenic not near genes chr3R 15725863 intergenic not near genes chr3R_4_15725001 chr3R_15725001 RAL-890 1490 chr3R 15773925 15773937 chr3R 15775227 15775250 5 1310 5.0 30.0 17.5 0.3 1325 chr3R 15773925 intergenic CR45206 -,CG4525 + chr3R 15774588 3` UTR,exon CR45206 -,CG4525 + chr3R 15775250 intron,3` UTR CG4525 +,CR45207 - chr3R_5_15770001 chr3R_15770001 RAL-890 1491 chr3R 16048863 16048879 chr3R 16048941 16048969 4 87 2.0 3.0 2.5 1.1 106 chr3R 16048863 intron ird5 - chr3R 16048916 intron ird5 - chr3R 16048969 intron ird5 - chr3R_4_16045001 chr3R_16045001 RAL-890 1492 chr3R 16215108 16215120 chr3R 16215213 16215225 5 104 2.0 1.5 1.8 1.8 117 chr3R 16215108 intergenic CR45641 + chr3R 16215166 intergenic CR45641 + chr3R 16215225 intergenic CR45641 + chr3R_5_16215001 chr3R_16215001 RAL-890 1493 chr3R 16246522 16246552 chr3R 16246598 16246628 6 76 0.0 5.0 2.5 1.7 106 chr3R 16246522 intron tara + chr3R 16246575 intron tara + chr3R 16246628 intron tara + chr3R_6_16245001 chr3R_16245001 RAL-890 1494 chr3R 16307425 16307450 chr3R 16307503 16307528 6 78 4.0 1.0 2.5 1.7 103 chr3R 16307425 intron Zip89B + chr3R 16307476 intron Zip89B + chr3R 16307528 intron Zip89B + chr3R_6_16305001 chr3R_16305001 RAL-890 1495 chr3R 16368458 16368479 chr3R 16368537 16368558 4 79 2.5 5.0 3.8 0.8 100 chr3R 16368458 intergenic CG14880 -,CG10317 - chr3R 16368508 intergenic CG14880 -,CG10317 - chr3R 16368558 intergenic CG14880 -,CG10317 - chr3R_4_16365001 chr3R_16365001 RAL-890 1496 chr3R 16472582 16472598 chr3R 16472658 16472674 8 74 5.5 4.5 5.0 1.3 92 chr3R 16472582 intergenic Gyc-89Da + chr3R 16472628 5` UTR Gyc-89Da + chr3R 16472674 5` UTR Gyc-89Da + chr3R_8_16470001 chr3R_16470001 RAL-890 1497 chr3R 16491928 16491961 chr3R 16500664 16500700 10 8738 23.0 22.5 22.8 0.4 8772 chr3R 16491928 exon Cad89D - chr3R 16496314 intergenic not near genes chr3R 16500700 exon decay - chr3R_10_16495001 chr3R_16495001 RAL-890 1498 chr3R 16725780 16725811 chr3R 16725861 16725892 13 81 4.0 1.0 2.5 3.7 112 chr3R 16725780 intron Ubx - chr3R 16725836 intron Ubx - chr3R 16725892 intron Ubx - chr3R_13_16725001 chr3R_16725001 RAL-890 1499 chr3R 16732148 16732165 chr3R 16732243 16732261 5 96 1.5 3.0 2.2 1.6 113 chr3R 16732148 intron Ubx - chr3R 16732204 intron Ubx - chr3R 16732261 intron Ubx - chr3R_5_16730001 chr3R_16730001 RAL-890 1500 chr3R 16756325 16756335 chr3R 16762516 16762526 diver 4 6191 1.0 1.5 1.2 1.8 6201 chr3R 16756325 intron bxd - chr3R 16759426 intron bxd - chr3R 16762526 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-890 1501 chr3R 16771614 16771635 chr3R 16771690 16771711 6 75 2.0 2.0 2.0 2.0 97 chr3R 16771614 intron bxd - chr3R 16771662 intron bxd - chr3R 16771711 intron bxd - chr3R_6_16770001 chr3R_16770001 RAL-890 1502 chr3R 16836970 16836981 chr3R 16837298 16837309 4 327 3.0 2.5 2.8 1.1 339 chr3R 16836970 intron iab-8 - chr3R 16837140 intron iab-8 - chr3R 16837309 intron iab-8 - chr3R_4_16835001 chr3R_16835001 RAL-890 1503 chr3R 16897724 16897748 chr3R 16897803 16897827 5 79 2.0 2.0 2.0 1.7 103 chr3R 16897724 intron,5` UTR iab-8 -,CR43617 + chr3R 16897776 intron,5` UTR iab-8 -,CR43617 + chr3R 16897827 intron,5` UTR iab-8 -,CR43617 + chr3R_5_16895001 chr3R_16895001 RAL-890 1504 chr3R 17096374 17096397 chr3R 17096459 17096484 6 86 2.5 3.0 2.8 1.6 110 chr3R 17096374 intron cher - chr3R 17096429 intron cher - chr3R 17096484 intron cher - chr3R_6_17095001 chr3R_17095001 RAL-890 1505 chr3R 17123753 17123760 chr3R 17123854 17123860 5 101 3.0 0.0 1.5 2.0 107 chr3R 17123753 intron cher - chr3R 17123806 intron cher - chr3R 17123860 intron cher - chr3R_5_17120001 chr3R_17120001 RAL-890 1506 chr3R 17184738 17184755 chr3R 17184814 17184831 5 76 1.5 1.5 1.5 2.0 93 chr3R 17184738 intron Mur89F - chr3R 17184784 intron Mur89F - chr3R 17184831 intron Mur89F - chr3R_5_17180001 chr3R_17180001 RAL-890 1507 chr3R 17294664 17294699 chr3R 17295092 17295127 BS 4 428 1.5 1.5 1.5 1.6 463 chr3R 17294664 intergenic not near genes chr3R 17294896 intergenic not near genes chr3R 17295127 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-890 1508 chr3R 17335157 17335187 chr3R 17335233 17335240 5 71 0.5 0.5 0.5 3.3 83 chr3R 17335157 intron beat-IIa - chr3R 17335198 intron beat-IIa - chr3R 17335240 intron beat-IIa - chr3R_5_17335001 chr3R_17335001 RAL-890 1509 chr3R 17346708 17346717 chr3R 17348271 17348280 F-element 5 1563 0.5 10.0 5.2 0.8 1572 chr3R 17346708 intron beat-IIa - chr3R 17347494 intron beat-IIa - chr3R 17348280 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-890 1510 chr3R 17393156 17393193 chr3R 17393232 17393269 7 76 1.0 2.5 1.8 2.5 113 chr3R 17393156 intergenic CREG -,sds22 + chr3R 17393212 intergenic CREG -,sds22 + chr3R 17393269 intergenic CREG -,sds22 + chr3R_7_17390001 chr3R_17390001 RAL-890 1511 chr3R 17419124 17419154 chr3R 17419292 17419322 10 168 2.5 2.0 2.2 3.1 198 chr3R 17419124 exon CG42834 + chr3R 17419223 3` UTR CG42834 + chr3R 17419322 intergenic CG42834 + chr3R_10_17415001 chr3R_17415001 RAL-890 1512 chr3R 17461199 17461232 chr3R 17461281 17461314 12 82 1.5 2.0 1.8 4.3 115 chr3R 17461199 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461314 intergenic not near genes chr3R_12_17460001 chr3R_17460001 RAL-890 1513 chr3R 17463150 17463181 chr3R 17463235 17463266 4 85 1.5 2.5 2.0 1.3 116 chr3R 17463150 intergenic not near genes chr3R 17463208 intergenic not near genes chr3R 17463266 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-890 1514 chr3R 17498851 17498880 chr3R 17498993 17499022 12 142 2.0 5.0 3.5 2.7 171 chr3R 17498851 intron Dscam3 - chr3R 17498936 intron Dscam3 - chr3R 17499022 intron Dscam3 - chr3R_12_17495001 chr3R_17495001 RAL-890 1515 chr3R 17506386 17506393 chr3R 17506464 17506471 4 78 1.5 2.5 2.0 1.3 85 chr3R 17506386 intergenic not near genes chr3R 17506428 intergenic not near genes chr3R 17506471 intergenic not near genes chr3R_4_17505001 chr3R_17505001 RAL-890 1516 chr3R 17522212 17522227 chr3R 17522305 17522320 10 93 7.0 0.0 3.5 2.2 108 chr3R 17522212 intergenic not near genes chr3R 17522266 intergenic not near genes chr3R 17522320 intergenic not near genes chr3R_10_17520001 chr3R_17520001 RAL-890 1517 chr3R 17535491 17535519 chr3R 17535574 17535602 9 83 1.5 2.5 2.0 3.0 111 chr3R 17535491 intron P5cr-2 + chr3R 17535546 intron P5cr-2 + chr3R 17535602 intron P5cr-2 + chr3R_9_17535001 chr3R_17535001 RAL-890 1518 chr3R 17534968 17534994 chr3R 17536204 17536230 12 1237 18.0 20.0 19.0 0.6 1262 chr3R 17534968 5` UTR P5cr-2 + chr3R 17535599 intron P5cr-2 + chr3R 17536230 exon P5cr-2 + chr3R_12_17535001 chr3R_17535001 RAL-890 1519 chr3R 17638320 17638327 chr3R 17638805 17638813 roo 6 486 0.0 3.0 1.5 2.4 493 chr3R 17638320 intron CG43175 + chr3R 17638566 intron CG43175 + chr3R 17638813 intron,intron CG43175 +,CR45222 + chr3R_6_17635001 chr3R_17635001 RAL-890 1520 chr3R 17655472 17655477 chr3R 17655567 17655572 5 95 0.0 4.0 2.0 1.7 100 chr3R 17655472 intron CG14322 + chr3R 17655522 intron CG14322 + chr3R 17655572 intron CG14322 + chr3R_5_17655001 chr3R_17655001 RAL-890 1521 chr3R 17764103 17764118 chr3R 17764191 17764206 4 87 4.0 0.0 2.0 1.3 103 chr3R 17764103 intergenic not near genes chr3R 17764154 intergenic not near genes chr3R 17764206 intergenic not near genes chr3R_4_17760001 chr3R_17760001 RAL-890 1522 chr3R 17823203 17823224 chr3R 17823280 17823301 9 77 6.0 5.5 5.8 1.3 98 chr3R 17823203 intron tinc + chr3R 17823252 intron tinc + chr3R 17823301 intron tinc + chr3R_9_17820001 chr3R_17820001 RAL-890 1523 chr3R 17899092 17899103 chr3R 17899170 17899180 4 78 3.0 3.0 3.0 1.0 88 chr3R 17899092 intron Rim - chr3R 17899136 intron Rim - chr3R 17899180 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-890 1524 chr3R 17925854 17925871 chr3R 17927321 17927323 hobo 7 1463 3.0 6.5 4.8 1.2 1469 chr3R 17925854 intron cpo + chr3R 17926588 intron cpo + chr3R 17927323 intron cpo + chr3R_7_17925001 chr3R_17925001 RAL-890 1525 chr3R 17991673 17991710 chr3R 17991897 17991934 14 223 2.0 1.5 1.8 5.0 261 chr3R 17991673 intron cpo + chr3R 17991804 intron cpo + chr3R 17991934 intron cpo + chr3R_14_17990001 chr3R_17990001 RAL-890 1526 chr3R 18061582 18061611 chr3R 18063150 18063179 F-element 8 1568 1.0 3.0 2.0 2.7 1597 chr3R 18061582 intergenic not near genes chr3R 18062380 intergenic not near genes chr3R 18063179 intergenic not near genes chr3R_8_18060001 chr3R_18060001 RAL-890 1527 chr3R 18065634 18065649 chr3R 18065744 18065760 4 110 5.0 0.5 2.8 1.1 126 chr3R 18065634 intergenic not near genes chr3R 18065697 intergenic not near genes chr3R 18065760 intergenic not near genes chr3R_4_18065001 chr3R_18065001 RAL-890 1528 chr3R 18108695 18108718 chr3R 18108777 18108800 5 82 2.0 2.0 2.0 1.7 105 chr3R 18108695 intron sr + chr3R 18108748 intron sr + chr3R 18108800 intron sr + chr3R_5_18105001 chr3R_18105001 RAL-890 1529 chr3R 18112372 18112396 chr3R 18112455 18112479 7 83 4.5 3.5 4.0 1.4 107 chr3R 18112372 intron sr + chr3R 18112426 intron sr + chr3R 18112479 intron sr + chr3R_7_18110001 chr3R_18110001 RAL-890 1530 chr3R 18126212 18126229 chr3R 18126291 18126308 6 79 2.0 3.5 2.8 1.6 96 chr3R 18126212 intron sr + chr3R 18126260 intron sr + chr3R 18126308 intron sr + chr3R_6_18125001 chr3R_18125001 RAL-890 1531 chr3R 18352576 18352603 chr3R 18352669 18352696 7 93 3.0 2.5 2.8 1.8 120 chr3R 18352576 intron CG15803 - chr3R 18352636 intron CG15803 - chr3R 18352696 intron CG15803 - chr3R_7_18350001 chr3R_18350001 RAL-890 1532 chr3R 18444939 18444972 chr3R 18445021 18445054 8 80 1.0 1.5 1.2 3.6 115 chr3R 18444939 intron fru - chr3R 18444996 intron fru - chr3R 18445054 intron fru - chr3R_8_18440001 chr3R_18440001 RAL-890 1533 chr3R 18464328 18464339 chr3R 18464467 18464475 4 138 0.0 4.0 2.0 1.3 147 chr3R 18464328 intron fru - chr3R 18464402 intron fru - chr3R 18464475 intron fru - chr3R_4_18460001 chr3R_18460001 RAL-890 1534 chr3R 18472286 18472298 chr3R 18472386 18472399 5 101 2.0 1.0 1.5 2.0 113 chr3R 18472286 intron fru - chr3R 18472342 intron fru - chr3R 18472399 intron fru - chr3R_5_18470001 chr3R_18470001 RAL-890 1535 chr3R 18501603 18501628 chr3R 18501684 18501709 6 81 2.5 4.0 3.2 1.4 106 chr3R 18501603 intron fru - chr3R 18501656 intron fru - chr3R 18501709 intron fru - chr3R_6_18500001 chr3R_18500001 RAL-890 1536 chr3R 18575574 18575605 chr3R 18575658 18575689 9 83 0.0 5.5 2.8 2.4 115 chr3R 18575574 intron,intron CG7694 +,fray + chr3R 18575632 intron,intron CG7694 +,fray + chr3R 18575689 intron,intron CG7694 +,fray + chr3R_9_18575001 chr3R_18575001 RAL-890 1537 chr3R 18606502 18606534 chr3R 18610733 18610766 F-element 9 4232 2.0 2.5 2.2 2.8 4264 chr3R 18606502 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610766 intron,intron qin +,CG14304 - chr3R_9_18605001 chr3R_18605001 RAL-890 1538 chr3R 18617722 18617746 chr3R 18617802 18617826 7 79 1.0 3.0 2.0 2.3 104 chr3R 18617722 intron,intron qin +,CG14304 - chr3R 18617774 intron,intron qin +,CG14304 - chr3R 18617826 intron,intron qin +,CG14304 - chr3R_7_18615001 chr3R_18615001 RAL-890 1539 chr3R 18664102 18664116 chr3R 18664179 18664191 4 76 0.0 2.5 1.2 1.8 89 chr3R 18664102 intron Gos28 + chr3R 18664146 intron Gos28 + chr3R 18664191 intron Gos28 + chr3R_4_18660001 chr3R_18660001 RAL-890 1540 chr3R 18695761 18695775 chr3R 18695845 18695849 5 82 5.0 0.0 2.5 1.4 88 chr3R 18695761 3` UTR CG34282 + chr3R 18695805 intergenic CG34282 + chr3R 18695849 intergenic CG34282 + chr3R_5_18695001 chr3R_18695001 RAL-890 1541 chr3R 18766777 18766808 chr3R 18766855 18766886 8 78 3.0 2.5 2.8 2.1 109 chr3R 18766777 intron CG7720 - chr3R 18766832 intron CG7720 - chr3R 18766886 intron CG7720 - chr3R_8_18765001 chr3R_18765001 RAL-890 1542 chr3R 18770293 18770322 chr3R 18770375 18770404 10 80 4.5 3.5 4.0 2.0 111 chr3R 18770293 intron CG7720 - chr3R 18770348 intron CG7720 - chr3R 18770404 intron CG7720 - chr3R_10_18770001 chr3R_18770001 RAL-890 1543 chr3R 18812081 18812107 chr3R 18812157 18812185 10 77 1.5 3.0 2.2 3.1 104 chr3R 18812081 intron CG18208 - chr3R 18812133 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_10_18810001 chr3R_18810001 RAL-890 1544 chr3R 18826716 18826744 chr3R 18826921 18826922 7 201 0.5 1.0 0.8 3.9 206 chr3R 18826716 intron CG18208 - chr3R 18826819 intron CG18208 - chr3R 18826922 intron CG18208 - chr3R_7_18825001 chr3R_18825001 RAL-890 1545 chr3R 18878025 18878037 chr3R 18878151 18878163 7 126 2.0 5.5 3.8 1.5 138 chr3R 18878025 intergenic not near genes chr3R 18878094 intergenic not near genes chr3R 18878163 intergenic not near genes chr3R_7_18875001 chr3R_18875001 RAL-890 1546 chr3R 18946440 18946450 chr3R 18946526 18946536 5 85 4.0 8.0 6.0 0.7 96 chr3R 18946440 intron CG42613 + chr3R 18946488 intron CG42613 + chr3R 18946536 intron CG42613 + chr3R_5_18945001 chr3R_18945001 RAL-890 1547 chr3R 18999535 18999546 chr3R 18999610 18999622 5 76 2.0 6.0 4.0 1.0 87 chr3R 18999535 intron gukh + chr3R 18999578 intron gukh + chr3R 18999622 intron gukh + chr3R_5_18995001 chr3R_18995001 RAL-890 1548 chr3R 19013020 19013051 chr3R 19013104 19013132 10 84 3.5 1.5 2.5 2.9 112 chr3R 19013020 intron gukh + chr3R 19013076 intron gukh + chr3R 19013132 intron gukh + chr3R_10_19010001 chr3R_19010001 RAL-890 1549 chr3R 19106823 19106846 chr3R 19106911 19106918 4 79 5.5 0.0 2.8 1.1 95 chr3R 19106823 intron CG6040 + chr3R 19106870 intron CG6040 + chr3R 19106918 intron CG6040 + chr3R_4_19105001 chr3R_19105001 RAL-890 1550 chr3R 19276930 19276940 chr3R 19277010 19277020 4 80 5.0 2.5 3.8 0.8 90 chr3R 19276930 intergenic not near genes chr3R 19276975 intergenic not near genes chr3R 19277020 intergenic not near genes chr3R_4_19275001 chr3R_19275001 RAL-890 1551 chr3R 19344677 19344688 chr3R 19344812 19344823 5 135 5.5 2.5 4.0 1.0 146 chr3R 19344677 intergenic not near genes chr3R 19344750 intergenic not near genes chr3R 19344823 intergenic not near genes chr3R_5_19340001 chr3R_19340001 RAL-890 1552 chr3R 19352356 19352383 chr3R 19352529 19352557 9 173 4.5 3.5 4.0 1.8 201 chr3R 19352356 intergenic not near genes chr3R 19352456 intergenic not near genes chr3R 19352557 intergenic not near genes chr3R_9_19350001 chr3R_19350001 RAL-890 1553 chr3R 19384359 19384384 chr3R 19384519 19384543 11 160 2.5 2.0 2.2 3.4 184 chr3R 19384359 exon Ino80 - chr3R 19384451 intron Ino80 - chr3R 19384543 intron Ino80 - chr3R_11_19380001 chr3R_19380001 RAL-890 1554 chr3R 19414599 19414616 chr3R 19414676 19414693 9 77 4.5 4.0 4.2 1.7 94 chr3R 19414599 intron CG31221 + chr3R 19414646 intron CG31221 + chr3R 19414693 intron CG31221 + chr3R_9_19410001 chr3R_19410001 RAL-890 1555 chr3R 19735710 19735735 chr3R 19735816 19735827 8 104 2.0 2.0 2.0 2.7 117 chr3R 19735710 intron GluClalpha + chr3R 19735768 intron GluClalpha + chr3R 19735827 intron GluClalpha + chr3R_8_19735001 chr3R_19735001 RAL-890 1556 chr3R 19793893 19793928 chr3R 19793986 19794021 9 93 3.5 2.0 2.8 2.4 128 chr3R 19793893 intergenic bnl - chr3R 19793957 intergenic bnl - chr3R 19794021 intergenic bnl - chr3R_9_19790001 chr3R_19790001 RAL-890 1557 chr3R 19827526 19827534 chr3R 19827612 19827620 5 86 4.0 1.5 2.8 1.3 94 chr3R 19827526 intron bnl - chr3R 19827573 intron bnl - chr3R 19827620 intron bnl - chr3R_5_19825001 chr3R_19825001 RAL-890 1558 chr3R 19846961 19846992 chr3R 19847120 19847151 4 159 1.5 1.5 1.5 1.6 190 chr3R 19846961 intergenic CG4662 + chr3R 19847056 intergenic CG4662 + chr3R 19847151 intergenic CG4662 + chr3R_4_19845001 chr3R_19845001 RAL-890 1559 chr3R 19912220 19912231 chr3R 19912297 19912308 5 77 5.0 6.5 5.8 0.7 88 chr3R 19912220 intron RhoGAP92B + chr3R 19912264 intron RhoGAP92B + chr3R 19912308 intron RhoGAP92B + chr3R_5_19910001 chr3R_19910001 RAL-890 1560 chr3R 20008823 20008835 chr3R 20008904 20008916 5 81 4.0 2.5 3.2 1.2 93 chr3R 20008823 intergenic MED25 +,Hs6st - chr3R 20008870 intergenic MED25 +,Hs6st - chr3R 20008916 intergenic MED25 +,Hs6st - chr3R_5_20005001 chr3R_20005001 RAL-890 1561 chr3R 20008848 20008853 chr3R 20008903 20008930 6 73 3.5 2.5 3.0 1.5 82 chr3R 20008848 intergenic MED25 +,Hs6st - chr3R 20008889 intergenic MED25 +,Hs6st - chr3R 20008930 intergenic MED25 +,Hs6st - chr3R_6_20005001 chr3R_20005001 RAL-890 1562 chr3R 20059464 20059496 chr3R 20059544 20059576 15 79 3.5 3.5 3.5 3.3 112 chr3R 20059464 intron CG4390 - chr3R 20059520 intron CG4390 - chr3R 20059576 exon CG4390 - chr3R_15_20055001 chr3R_20055001 RAL-890 1563 chr3R 20072976 20072978 chr3R 20074613 20074635 4 1642 24.0 19.0 21.5 0.2 1659 chr3R 20072976 intergenic not near genes chr3R 20073806 intergenic not near genes chr3R 20074635 intergenic not near genes chr3R_4_20070001 chr3R_20070001 RAL-890 1564 chr3R 20109537 20109571 chr3R 20114743 20114777 copia 7 5206 3.0 4.5 3.8 1.5 5240 chr3R 20109537 intergenic not near genes chr3R 20112157 intergenic not near genes chr3R 20114777 intergenic CG10887 + chr3R_7_20110001 chr3R_20110001 RAL-890 1565 chr3R 20156694 20156720 chr3R 20165863 20165890 roo 6 9170 4.5 5.0 4.8 1.0 9196 chr3R 20156694 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165890 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-890 1566 chr3R 20205559 20205596 chr3R 20205681 20205718 10 122 2.0 1.5 1.8 3.6 159 chr3R 20205559 intron Nlg4 + chr3R 20205638 intron Nlg4 + chr3R 20205718 intron Nlg4 + chr3R_10_20205001 chr3R_20205001 RAL-890 1567 chr3R 20222263 20222279 chr3R 20222346 20222362 8 83 1.0 4.0 2.5 2.3 99 chr3R 20222263 intron Nlg4 + chr3R 20222312 intron Nlg4 + chr3R 20222362 intron Nlg4 + chr3R_8_20220001 chr3R_20220001 RAL-890 1568 chr3R 20230321 20230329 chr3R 20230402 20230410 4 81 5.0 0.0 2.5 1.1 89 chr3R 20230321 intron Nlg4 + chr3R 20230366 intron Nlg4 + chr3R 20230410 intron Nlg4 + chr3R_4_20230001 chr3R_20230001 RAL-890 1569 chr3R 20245289 20245304 chr3R 20248899 20248914 F-element 6 3610 0.5 2.5 1.5 2.4 3625 chr3R 20245289 3` UTR Nlg4 + chr3R 20247102 intergenic not near genes chr3R 20248914 intergenic not near genes chr3R_6_20245001 chr3R_20245001 RAL-890 1570 chr3R 20252230 20252243 chr3R 20252308 20252321 5 78 3.0 2.0 2.5 1.4 91 chr3R 20252230 intergenic not near genes chr3R 20252276 intergenic cic + chr3R 20252321 intergenic cic + chr3R_5_20250001 chr3R_20250001 RAL-890 1571 chr3R 20256848 20256865 chr3R 20256926 20256943 7 78 0.0 3.5 1.8 2.5 95 chr3R 20256848 intron cic + chr3R 20256896 intron cic + chr3R 20256943 intron cic + chr3R_7_20255001 chr3R_20255001 RAL-890 1572 chr3R 20266517 20266543 chr3R 20272988 20273014 Burdock 9 6471 0.0 1.5 0.8 5.0 6497 chr3R 20266517 intron cic + chr3R 20269766 intron cic + chr3R 20273014 intron cic + chr3R_9_20265001 chr3R_20265001 RAL-890 1573 chr3R 20282275 20282306 chr3R 20282351 20282382 9 76 0.0 3.0 1.5 3.6 107 chr3R 20282275 intron cic + chr3R 20282328 intron cic + chr3R 20282382 intron cic + chr3R_9_20280001 chr3R_20280001 RAL-890 1574 chr3R 20309011 20309016 chr3R 20309062 20309088 4 67 2.5 2.5 2.5 1.1 77 chr3R 20309011 intergenic CG42668 + chr3R 20309050 intergenic CG42668 + chr3R 20309088 intergenic CG42668 + chr3R_4_20305001 chr3R_20305001 RAL-890 1575 chr3R 20330999 20331024 chr3R 20331485 20331510 roo 6 484 4.0 2.5 3.2 1.4 511 chr3R 20330999 intergenic Sirt2 + chr3R 20331254 intergenic Sirt2 + chr3R 20331510 intergenic not near genes chr3R_6_20330001 chr3R_20330001 RAL-890 1576 chr3R 20345132 20345153 chr3R 20345219 20345222 7 80 6.5 2.5 4.5 1.3 90 chr3R 20345132 intergenic not near genes chr3R 20345177 intergenic not near genes chr3R 20345222 intergenic not near genes chr3R_7_20345001 chr3R_20345001 RAL-890 1577 chr3R 20352061 20352090 chr3R 20352166 20352195 6 105 2.0 2.0 2.0 2.0 134 chr3R 20352061 intergenic not near genes chr3R 20352128 intergenic not near genes chr3R 20352195 intergenic not near genes chr3R_6_20350001 chr3R_20350001 RAL-890 1578 chr3R 20353967 20353980 chr3R 20354053 20354065 6 86 3.5 3.5 3.5 1.3 98 chr3R 20353967 intergenic not near genes chr3R 20354016 intergenic not near genes chr3R 20354065 intergenic not near genes chr3R_6_20350001 chr3R_20350001 RAL-890 1579 chr3R 20368778 20368802 chr3R 20368874 20368898 8 96 2.5 2.5 2.5 2.3 120 chr3R 20368778 intergenic not near genes chr3R 20368838 intergenic not near genes chr3R 20368898 intergenic not near genes chr3R_8_20365001 chr3R_20365001 RAL-890 1580 chr3R 20506598 20506616 chr3R 20507391 20507408 BS 8 800 2.0 2.5 2.2 2.5 810 chr3R 20506598 intergenic Or92a + chr3R 20507003 intergenic CG4288 - chr3R 20507408 3` UTR CG4288 - chr3R_8_20505001 chr3R_20505001 RAL-890 1581 chr3R 20516551 20516561 chr3R 20516907 20516915 5 355 3.5 4.0 3.8 1.0 364 chr3R 20516551 intergenic not near genes chr3R 20516733 intergenic not near genes chr3R 20516915 intergenic not near genes chr3R_5_20515001 chr3R_20515001 RAL-890 1582 chr3R 20573304 20573317 chr3R 20573505 20573518 9 201 3.0 2.5 2.8 2.4 214 chr3R 20573304 intergenic CG5191 + chr3R 20573411 intergenic CG5191 + chr3R 20573518 intergenic not near genes chr3R_9_20570001 chr3R_20570001 RAL-890 1583 chr3R 20596195 20596212 chr3R 20596282 20596299 8 87 1.5 4.5 3.0 2.0 104 chr3R 20596195 intron bon + chr3R 20596247 intron bon + chr3R 20596299 intron bon + chr3R_8_20595001 chr3R_20595001 RAL-890 1584 chr3R 20644648 20644681 chr3R 20644725 20644756 9 77 2.5 1.0 1.8 3.2 108 chr3R 20644648 3` UTR GluRIIE - chr3R 20644702 3` UTR GluRIIE - chr3R 20644756 3` UTR GluRIIE - chr3R_9_20640001 chr3R_20640001 RAL-890 1585 chr3R 20707745 20707763 chr3R 20707960 20707978 12 215 5.0 3.5 4.2 2.3 233 chr3R 20707745 intron Oamb - chr3R 20707862 intron Oamb - chr3R 20707978 intron Oamb - chr3R_12_20705001 chr3R_20705001 RAL-890 1586 chr3R 20722851 20722879 chr3R 20722978 20723006 6 127 4.5 3.0 3.8 1.2 155 chr3R 20722851 intergenic not near genes chr3R 20722928 intergenic not near genes chr3R 20723006 intergenic not near genes chr3R_6_20720001 chr3R_20720001 RAL-890 1587 chr3R 20730928 20731057 chr3R 20731028 20731145 6 94 0.0 0.0 0.0 6.0 217 chr3R 20730928 intergenic not near genes chr3R 20731036 intergenic not near genes chr3R 20731145 intergenic CG31205 + chr3R_6_20730001 chr3R_20730001 RAL-890 1588 chr3R 20733283 20733306 chr3R 20733359 20733382 4 76 1.5 3.5 2.5 1.1 99 chr3R 20733283 intergenic not near genes chr3R 20733332 intergenic not near genes chr3R 20733382 intergenic not near genes chr3R_4_20730001 chr3R_20730001 RAL-890 1589 chr3R 20744363 20744400 chr3R 20744504 20744541 8 141 3.5 0.5 2.0 2.7 178 chr3R 20744363 intron,exon CG42322 +,CG31200 - chr3R 20744452 intron,exon CG42322 +,CG31200 - chr3R 20744541 intron,exon CG42322 +,CG31200 - chr3R_8_20740001 chr3R_20740001 RAL-890 1590 chr3R 20771701 20771726 chr3R 20771779 20771807 5 80 0.0 3.0 1.5 2.0 106 chr3R 20771701 intron,intron Syp +,Takl1 - chr3R 20771754 intron,intron Syp +,Takl1 - chr3R 20771807 intron,exon Syp +,Takl1 - chr3R_5_20770001 chr3R_20770001 RAL-890 1591 chr3R 20787443 20787453 chr3R 20787533 20787544 5 91 5.0 3.5 4.2 1.0 101 chr3R 20787443 intron Syp + chr3R 20787494 intron Syp + chr3R 20787544 intron Syp + chr3R_5_20785001 chr3R_20785001 RAL-890 1592 chr3R 20854493 20854518 chr3R 20859283 20859308 Doc 4 4790 3.0 5.0 4.0 0.8 4815 chr3R 20854493 intron Ir93a - chr3R 20856900 intron Ir93a - chr3R 20859308 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-890 1593 chr3R 20870251 20870284 chr3R 20870336 20870368 14 84 3.0 6.0 4.5 2.5 117 chr3R 20870251 intergenic not near genes chr3R 20870310 intergenic not near genes chr3R 20870368 intergenic not near genes chr3R_14_20870001 chr3R_20870001 RAL-890 1594 chr3R 20901661 20901686 chr3R 20901757 20901789 11 102 1.5 0.5 1.0 5.5 128 chr3R 20901661 intergenic CG5621 + chr3R 20901725 intergenic CG5621 + chr3R 20901789 intergenic CG5621 + chr3R_11_20900001 chr3R_20900001 RAL-890 1595 chr3R 21014014 21014045 chr3R 21014092 21014123 12 78 4.5 3.5 4.0 2.4 109 chr3R 21014014 3` UTR Calx + chr3R 21014068 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_12_21010001 chr3R_21010001 RAL-890 1596 chr3R 21020399 21020432 chr3R 21020475 21020508 9 76 5.5 1.5 3.5 2.0 109 chr3R 21020399 3` UTR Rlip + chr3R 21020454 3` UTR Rlip + chr3R 21020508 3` UTR Rlip + chr3R_9_21020001 chr3R_21020001 RAL-890 1597 chr3R 21052328 21052361 chr3R 21052577 21052610 18 249 3.0 1.5 2.2 5.6 282 chr3R 21052328 intron Mvl - chr3R 21052469 intron Mvl - chr3R 21052610 intron Mvl - chr3R_18_21050001 chr3R_21050001 RAL-890 1598 chr3R 21108038 21108052 chr3R 21108299 21108313 4 261 2.5 0.5 1.5 1.6 275 chr3R 21108038 intergenic Sec15 -,rtet + chr3R 21108176 intergenic Sec15 -,rtet + chr3R 21108313 intergenic rtet +,Sec15 - chr3R_4_21105001 chr3R_21105001 RAL-890 1599 chr3R 21141676 21141707 chr3R 21150153 21150187 Tirant 10 8478 0.5 2.5 1.5 4.0 8511 chr3R 21141676 intron SNF4Agamma + chr3R 21145932 intron SNF4Agamma + chr3R 21150187 intron SNF4Agamma + chr3R_10_21145001 chr3R_21145001 RAL-890 1600 chr3R 21154551 21154575 chr3R 21154756 21154790 4 208 8.0 0.0 4.0 0.8 239 chr3R 21154551 intron SNF4Agamma + chr3R 21154670 intron SNF4Agamma + chr3R 21154790 intron SNF4Agamma + chr3R_4_21150001 chr3R_21150001 RAL-890 1601 chr3R 21240449 21240478 chr3R 21240541 21240570 11 91 0.5 3.0 1.8 3.9 121 chr3R 21240449 intergenic not near genes chr3R 21240510 intergenic not near genes chr3R 21240570 intergenic not near genes chr3R_11_21240001 chr3R_21240001 RAL-890 1602 chr3R 21293200 21293231 chr3R 21293312 21293343 15 112 4.5 2.5 3.5 3.3 143 chr3R 21293200 intron SIFaR - chr3R 21293272 intron SIFaR - chr3R 21293343 intron SIFaR - chr3R_15_21290001 chr3R_21290001 RAL-890 1603 chr3R 21385936 21385959 chr3R 21386013 21386036 7 77 3.0 3.5 3.2 1.7 100 chr3R 21385936 intergenic not near genes chr3R 21385986 intergenic not near genes chr3R 21386036 intergenic not near genes chr3R_7_21385001 chr3R_21385001 RAL-890 1604 chr3R 21472018 21472034 chr3R 21472099 21472114 10 80 2.0 2.0 2.0 3.3 96 chr3R 21472018 intergenic not near genes chr3R 21472066 intergenic not near genes chr3R 21472114 intergenic not near genes chr3R_10_21470001 chr3R_21470001 RAL-890 1605 chr3R 21518254 21518269 chr3R 21518337 21518353 5 84 0.0 3.5 1.8 1.8 99 chr3R 21518254 intergenic not near genes chr3R 21518304 intergenic not near genes chr3R 21518353 intergenic not near genes chr3R_5_21515001 chr3R_21515001 RAL-890 1606 chr3R 21519988 21520135 chr3R 21520089 21520229 9 99 3.0 3.0 3.0 2.2 241 chr3R 21519988 intergenic not near genes chr3R 21520108 intergenic not near genes chr3R 21520229 intergenic not near genes chr3R_9_21520001 chr3R_21520001 RAL-890 1607 chr3R 21761125 21761152 chr3R 21768516 21768541 mdg1 4 7391 4.0 3.0 3.5 0.9 7416 chr3R 21761125 exon CG42335 + chr3R 21764833 intron CG42335 + chr3R 21768541 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-890 1608 chr3R 21837181 21837206 chr3R 21837260 21837285 10 79 1.5 3.5 2.5 2.9 104 chr3R 21837181 intergenic not near genes chr3R 21837233 intergenic not near genes chr3R 21837285 intergenic not near genes chr3R_10_21835001 chr3R_21835001 RAL-890 1609 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 7.0 14.5 10.8 0.3 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-890 1610 chr3R 21907534 21907534 chr3R 28831801 28831802 13 6924267 14.5 14.0 14.2 0.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_13_25365001 chr3R_25365001 RAL-890 1611 chr3R 21907535 21907535 chr3R 28831801 28831802 16 6924266 15.0 14.0 14.5 1.0 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_16_25365001 chr3R_25365001 RAL-890 1612 chr3R 21907536 21907536 chr3R 28831801 28831802 15 6924265 15.0 14.0 14.5 1.0 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_15_25365001 chr3R_25365001 RAL-890 1613 chr3R 21952138 21952171 chr3R 21952223 21952256 11 85 1.0 5.0 3.0 2.8 118 chr3R 21952138 intron Eip93F + chr3R 21952197 intron Eip93F + chr3R 21952256 intron Eip93F + chr3R_11_21950001 chr3R_21950001 RAL-890 1614 chr3R 22239491 22239503 chr3R 22248551 22248563 roo 6 9060 6.5 0.0 3.2 1.4 9072 chr3R 22239491 intron SKIP + chr3R 22244027 intron SKIP + chr3R 22248563 intron SKIP + chr3R_6_22240001 chr3R_22240001 RAL-890 1615 chr3R 22335839 22335867 chr3R 22335925 22335953 9 86 4.5 2.0 3.2 2.1 114 chr3R 22335839 intron CG5388 - chr3R 22335896 intron CG5388 - chr3R 22335953 intron CG5388 - chr3R_9_22335001 chr3R_22335001 RAL-890 1616 chr3R 22428583 22428609 chr3R 22428658 22428681 8 73 4.0 5.0 4.5 1.5 98 chr3R 22428583 intron CG13847 - chr3R 22428632 intron CG13847 - chr3R 22428681 intron CG13847 - chr3R_8_22425001 chr3R_22425001 RAL-890 1617 chr3R 22433096 22433103 chr3R 22433192 22433200 4 97 6.0 4.0 5.0 0.7 104 chr3R 22433096 intron CG13847 - chr3R 22433148 intron CG13847 - chr3R 22433200 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-890 1618 chr3R 22450553 22450579 chr3R 22453193 22453212 NOF 9 2636 2.0 5.0 3.5 2.0 2659 chr3R 22450553 intron CG34376 + chr3R 22451882 intron CG34376 + chr3R 22453212 intron CG34376 + chr3R_9_22450001 chr3R_22450001 RAL-890 1619 chr3R 22503868 22503905 chr3R 22503948 22503984 13 78 3.0 1.0 2.0 4.3 116 chr3R 22503868 intron Octbeta1R + chr3R 22503926 intron Octbeta1R + chr3R 22503984 intron Octbeta1R + chr3R_13_22500001 chr3R_22500001 RAL-890 1620 chr3R 22591668 22591692 chr3R 22591747 22591770 8 79 3.5 4.0 3.8 1.7 102 chr3R 22591668 intron Efa6 + chr3R 22591719 intron Efa6 + chr3R 22591770 intron Efa6 + chr3R_8_22590001 chr3R_22590001 RAL-890 1621 chr3R 22840820 22840850 chr3R 22841276 22841312 15 460 1.0 4.0 2.5 4.3 492 chr3R 22840820 intergenic not near genes chr3R 22841066 intergenic not near genes chr3R 22841312 intergenic not near genes chr3R_15_22840001 chr3R_22840001 RAL-890 1622 chr3R 22852150 22852160 chr3R 22852239 22852263 5 93 1.0 1.5 1.2 2.3 113 chr3R 22852150 intergenic CR43846 - chr3R 22852206 intergenic CR43846 - chr3R 22852263 intergenic CR43846 - chr3R_5_22850001 chr3R_22850001 RAL-890 1623 chr3R 22861227 22861246 chr3R 22861329 22861348 10 102 6.0 2.0 4.0 2.0 121 chr3R 22861227 intergenic not near genes chr3R 22861288 intergenic not near genes chr3R 22861348 intergenic not near genes chr3R_10_22860001 chr3R_22860001 RAL-890 1624 chr3R 22974284 22974309 chr3R 22974368 22974393 8 82 1.0 1.0 1.0 4.0 109 chr3R 22974284 intergenic not near genes chr3R 22974338 intergenic not near genes chr3R 22974393 intergenic not near genes chr3R_8_22970001 chr3R_22970001 RAL-890 1625 chr3R 22993507 22993529 chr3R 22993642 22993663 5 132 4.0 2.5 3.2 1.2 156 chr3R 22993507 intron Nha2 - chr3R 22993585 intron Nha2 - chr3R 22993663 intron Nha2 - chr3R_5_22990001 chr3R_22990001 RAL-890 1626 chr3R 23011374 23011408 chr3R 23011470 23011503 9 96 4.0 4.0 4.0 1.8 129 chr3R 23011374 intergenic not near genes chr3R 23011438 intergenic CR44225 - chr3R 23011503 intergenic CR44225 - chr3R_9_23010001 chr3R_23010001 RAL-890 1627 chr3R 23034820 23034847 chr3R 23035233 23035259 11 413 2.5 3.0 2.8 2.9 439 chr3R 23034820 intron CG13833 - chr3R 23035040 intron CG13833 - chr3R 23035259 intron CG13833 - chr3R_11_23035001 chr3R_23035001 RAL-890 1628 chr3R 23073665 23073673 chr3R 23073745 23073761 6 85 5.0 3.0 4.0 1.2 96 chr3R 23073665 intron CG13830 - chr3R 23073713 intron CG13830 - chr3R 23073761 intron CG13830 - chr3R_6_23070001 chr3R_23070001 RAL-890 1629 chr3R 23078184 23078209 chr3R 23078728 23078751 4 548 3.5 12.0 7.8 0.5 567 chr3R 23078184 intron CG13830 - chr3R 23078468 intron CG13830 - chr3R 23078751 intron CG13830 - chr3R_4_23075001 chr3R_23075001 RAL-890 1630 chr3R 23078247 23078281 chr3R 23078899 23078931 12 651 17.5 25.5 21.5 0.5 684 chr3R 23078247 intron CG13830 - chr3R 23078589 intron CG13830 - chr3R 23078931 intron CG13830 - chr3R_12_23075001 chr3R_23075001 RAL-890 1631 chr3R 23145175 23145190 chr3R 23145252 23145267 7 77 2.0 5.5 3.8 1.5 92 chr3R 23145175 intergenic not near genes chr3R 23145221 intergenic not near genes chr3R 23145267 intergenic not near genes chr3R_7_23145001 chr3R_23145001 RAL-890 1632 chr3R 23182495 23182626 chr3R 23182612 23182706 10 113 1.0 0.5 0.8 5.6 211 chr3R 23182495 intron Irk1 + chr3R 23182600 intron Irk1 + chr3R 23182706 intron Irk1 + chr3R_10_23180001 chr3R_23180001 RAL-890 1633 chr3R 23291255 23291280 chr3R 23291337 23291366 4 84 1.5 1.0 1.2 1.8 111 chr3R 23291255 3` UTR pnt - chr3R 23291310 3` UTR pnt - chr3R 23291366 exon pnt - chr3R_4_23290001 chr3R_23290001 RAL-890 1634 chr3R 23558398 23558427 chr3R 23560179 23560208 Bari1 11 1781 4.0 3.0 3.5 2.4 1810 chr3R 23558398 intron beat-IV + chr3R 23559303 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_11_23555001 chr3R_23555001 RAL-890 1635 chr3R 23564449 23564476 chr3R 23564593 23564617 9 144 2.0 5.0 3.5 2.0 168 chr3R 23564449 intron beat-IV + chr3R 23564533 intron beat-IV + chr3R 23564617 intron beat-IV + chr3R_9_23560001 chr3R_23560001 RAL-890 1636 chr3R 23626141 23626162 chr3R 23626235 23626256 5 94 1.5 2.5 2.0 1.7 115 chr3R 23626141 intron CG31145 - chr3R 23626198 intron CG31145 - chr3R 23626256 intron CG31145 - chr3R_5_23625001 chr3R_23625001 RAL-890 1637 chr3R 23726291 23726314 chr3R 23726379 23726402 10 88 3.5 2.5 3.0 2.5 111 chr3R 23726291 intron CG10365 + chr3R 23726346 intron CG10365 + chr3R 23726402 intron CG10365 + chr3R_10_23725001 chr3R_23725001 RAL-890 1638 chr3R 23820641 23820667 chr3R 23820725 23820751 8 84 0.5 5.0 2.8 2.1 110 chr3R 23820641 5` UTR CG34355 + chr3R 23820696 5` UTR CG34355 + chr3R 23820751 5` UTR CG34355 + chr3R_8_23820001 chr3R_23820001 RAL-890 1639 chr3R 23835404 23835428 chr3R 23844553 23844578 roo 7 9150 5.5 3.5 4.5 1.3 9174 chr3R 23835404 intron CG34355 + chr3R 23839991 intron CG34355 + chr3R 23844578 intron CG34355 + chr3R_7_23835001 chr3R_23835001 RAL-890 1640 chr3R 23888084 23888116 chr3R 23888170 23888202 11 86 3.0 4.0 3.5 2.4 118 chr3R 23888084 intron Pli - chr3R 23888143 intron Pli - chr3R 23888202 intron Pli - chr3R_11_23885001 chr3R_23885001 RAL-890 1641 chr3R 23944906 23944935 chr3R 23944991 23945020 14 84 1.0 2.5 1.8 5.0 114 chr3R 23944906 intron CG12268 - chr3R 23944963 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_14_23940001 chr3R_23940001 RAL-890 1642 chr3R 23949041 23949074 chr3R 23949118 23949149 11 76 1.0 3.0 2.0 3.7 108 chr3R 23949041 intergenic not near genes chr3R 23949095 intergenic not near genes chr3R 23949149 intergenic not near genes chr3R_11_23945001 chr3R_23945001 RAL-890 1643 chr3R 24021629 24021647 chr3R 24021719 24021737 4 90 5.0 2.5 3.8 0.8 108 chr3R 24021629 intron KrT95D - chr3R 24021683 intron KrT95D - chr3R 24021737 intron KrT95D - chr3R_4_24020001 chr3R_24020001 RAL-890 1644 chr3R 24072087 24072116 chr3R 24072525 24072535 jockey 5 430 2.5 5.5 4.0 1.0 448 chr3R 24072087 intron 4EHP - chr3R 24072311 intron 4EHP - chr3R 24072535 intron 4EHP - chr3R_5_24070001 chr3R_24070001 RAL-890 1645 chr3R 24076917 24076944 chr3R 24078384 24078407 hobo 6 1466 6.5 2.5 4.5 1.1 1490 chr3R 24076917 intron 4EHP - chr3R 24077662 intron 4EHP - chr3R 24078407 intron 4EHP - chr3R_6_24075001 chr3R_24075001 RAL-890 1646 chr3R 24207226 24207246 chr3R 24212300 24212322 flea 4 5075 1.5 5.5 3.5 0.9 5096 chr3R 24207226 intron twin - chr3R 24209774 intron twin - chr3R 24212322 intron twin - chr3R_4_24205001 chr3R_24205001 RAL-890 1647 chr3R 24378006 24378030 chr3R 24378340 24378364 11 333 2.0 3.0 2.5 3.1 358 chr3R 24378006 intergenic CG33342 + chr3R 24378185 intergenic CG33342 + chr3R 24378364 intergenic not near genes chr3R_11_24375001 chr3R_24375001 RAL-890 1648 chr3R 24426287 24426316 chr3R 24426543 24426573 7 257 1.5 3.0 2.2 2.2 286 chr3R 24426287 intron nAChRalpha1 - chr3R 24426430 intron nAChRalpha1 - chr3R 24426573 intron nAChRalpha1 - chr3R_7_24425001 chr3R_24425001 RAL-890 1649 chr3R 24431600 24431625 chr3R 24431679 24431704 8 79 1.0 1.0 1.0 4.0 104 chr3R 24431600 intron nAChRalpha1 - chr3R 24431652 intron nAChRalpha1 - chr3R 24431704 intron nAChRalpha1 - chr3R_8_24430001 chr3R_24430001 RAL-890 1650 chr3R 24466472 24466495 chr3R 24466550 24466572 5 77 4.5 2.0 3.2 1.2 100 chr3R 24466472 intergenic not near genes chr3R 24466522 intergenic not near genes chr3R 24466572 intergenic not near genes chr3R_5_24465001 chr3R_24465001 RAL-890 1651 chr3R 24493276 24493299 chr3R 24493505 24493529 BS 9 229 6.5 1.5 4.0 1.8 253 chr3R 24493276 intergenic not near genes chr3R 24493402 intergenic not near genes chr3R 24493529 intergenic not near genes chr3R_9_24490001 chr3R_24490001 RAL-890 1652 chr3R 24527801 24527834 chr3R 24527892 24527923 10 91 2.0 0.5 1.2 4.5 122 chr3R 24527801 intergenic CG6607 +,CG13618 + chr3R 24527862 intergenic CG6607 +,CG13618 + chr3R 24527923 intergenic CG6607 +,CG13618 + chr3R_10_24525001 chr3R_24525001 RAL-890 1653 chr3R 24579359 24579371 chr3R 24579441 24579448 4 81 1.0 0.0 0.5 2.7 89 chr3R 24579359 intron CG13624 - chr3R 24579404 intron CG13624 - chr3R 24579448 intron CG13624 - chr3R_4_24575001 chr3R_24575001 RAL-890 1654 chr3R 24691306 24691315 chr3R 24691406 24691415 4 100 4.0 4.5 4.2 0.8 109 chr3R 24691306 intron slo + chr3R 24691360 intron slo + chr3R 24691415 intron slo + chr3R_4_24690001 chr3R_24690001 RAL-890 1655 chr3R 24730092 24730113 chr3R 24732470 24732491 Doc 5 2377 4.0 0.0 2.0 1.7 2399 chr3R 24730092 intron tok + chr3R 24731292 intron tok + chr3R 24732491 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-890 1656 chr3R 24789982 24790004 chr3R 24790127 24790140 6 144 4.0 2.0 3.0 1.5 158 chr3R 24789982 intron,5` UTR Ets96B +,CG13634 - chr3R 24790061 intron,5` UTR Ets96B +,CG13634 - chr3R 24790140 intron Ets96B + chr3R_6_24790001 chr3R_24790001 RAL-890 1657 chr3R 24912479 24912513 chr3R 24912561 24912595 10 82 1.5 0.5 1.0 5.0 116 chr3R 24912479 intergenic not near genes chr3R 24912537 intergenic CR44267 + chr3R 24912595 intergenic CR44267 + chr3R_10_24910001 chr3R_24910001 RAL-890 1658 chr3R 24927136 24927161 chr3R 24931922 24931952 Doc 6 4786 3.5 5.5 4.5 1.1 4816 chr3R 24927136 intergenic Trf4-2 + chr3R 24929544 intergenic not near genes chr3R 24931952 intergenic CG11771 + chr3R_6_24925001 chr3R_24925001 RAL-890 1659 chr3R 25086198 25086214 chr3R 25086284 25086301 6 87 1.5 0.0 0.8 3.3 103 chr3R 25086198 intergenic not near genes chr3R 25086250 intergenic not near genes chr3R 25086301 intergenic not near genes chr3R_6_25085001 chr3R_25085001 RAL-890 1660 chr3R 25166364 25166378 chr3R 25166440 25166454 4 76 2.0 2.0 2.0 1.3 90 chr3R 25166364 intergenic not near genes chr3R 25166409 intergenic not near genes chr3R 25166454 intergenic not near genes chr3R_4_25165001 chr3R_25165001 RAL-890 1661 chr3R 25289194 25289211 chr3R 25289450 25289467 9 256 22.5 29.5 26.0 0.3 273 chr3R 25289194 intergenic CG13658 + chr3R 25289330 intergenic CG13658 + chr3R 25289467 intergenic CG11893 + chr3R_9_25285001 chr3R_25285001 RAL-890 1662 chr3R 25296171 25296194 chr3R 25296252 25296270 11 80 4.5 3.5 4.0 2.2 99 chr3R 25296171 3` UTR CG31097 - chr3R 25296220 3` UTR CG31097 - chr3R 25296270 3` UTR CG31097 - chr3R_11_25295001 chr3R_25295001 RAL-890 1663 chr3R 25300673 25300701 chr3R 25300789 25300817 14 116 3.5 5.5 4.5 2.5 144 chr3R 25300673 intergenic CG13659 + chr3R 25300745 intergenic CG13659 + chr3R 25300817 intergenic CG13659 + chr3R_14_25300001 chr3R_25300001 RAL-890 1664 chr3R 25360206 25360222 chr3R 25360286 25360311 5 87 3.0 1.5 2.2 1.6 105 chr3R 25360206 intron Fur1 - chr3R 25360258 intron Fur1 - chr3R 25360311 intron Fur1 - chr3R_5_25360001 chr3R_25360001 RAL-890 1665 chr3R 25368483 25368494 chr3R 25368599 25368612 7 118 4.5 4.0 4.2 1.3 129 chr3R 25368483 intron Fur1 - chr3R 25368548 intron Fur1 - chr3R 25368612 intron Fur1 - chr3R_7_25365001 chr3R_25365001 RAL-890 1666 chr3R 25377402 25377433 chr3R 25377490 25377521 14 88 2.5 1.0 1.8 5.0 119 chr3R 25377402 intron Fur1 - chr3R 25377462 intron Fur1 - chr3R 25377521 intron Fur1 - chr3R_14_25375001 chr3R_25375001 RAL-890 1667 chr3R 25436489 25436519 chr3R 25436583 25436600 9 87 3.0 2.0 2.5 2.6 111 chr3R 25436489 intron Fur1 - chr3R 25436544 intron Fur1 - chr3R 25436600 intron Fur1 - chr3R_9_25435001 chr3R_25435001 RAL-890 1668 chr3R 25511674 25511697 chr3R 25511753 25511776 5 79 3.0 1.5 2.2 1.6 102 chr3R 25511674 intergenic not near genes chr3R 25511725 intergenic not near genes chr3R 25511776 intergenic not near genes chr3R_5_25510001 chr3R_25510001 RAL-890 1669 chr3R 25549913 25549948 chr3R 25550001 25550035 7 87 2.0 1.0 1.5 2.8 122 chr3R 25549913 intron msi + chr3R 25549974 intron msi + chr3R 25550035 intron msi + chr3R_7_25545001 chr3R_25545001 RAL-890 1670 chr3R 25689131 25689164 chr3R 25689239 25689272 13 106 3.0 2.5 2.8 3.4 141 chr3R 25689131 intergenic not near genes chr3R 25689202 intergenic not near genes chr3R 25689272 intergenic not near genes chr3R_13_25685001 chr3R_25685001 RAL-890 1671 chr3R 25743972 25743995 chr3R 25744153 25744176 5 181 1.0 3.0 2.0 1.7 204 chr3R 25743972 intron LpR1 - chr3R 25744074 intron LpR1 - chr3R 25744176 intron LpR1 - chr3R_5_25740001 chr3R_25740001 RAL-890 1672 chr3R 25796380 25796398 chr3R 25796458 25796476 6 78 5.0 0.0 2.5 1.7 96 chr3R 25796380 intergenic CR43847 - chr3R 25796428 intergenic CR43847 - chr3R 25796476 intergenic CR43847 - chr3R_6_25795001 chr3R_25795001 RAL-890 1673 chr3R 25843640 25843668 chr3R 25843770 25843798 11 130 2.0 4.0 3.0 2.8 158 chr3R 25843640 intergenic CR45653 + chr3R 25843719 intergenic CR45653 + chr3R 25843798 intergenic CR45653 + chr3R_11_25840001 chr3R_25840001 RAL-890 1674 chr3R 25847689 25847715 chr3R 25847853 25847879 5 158 1.5 2.5 2.0 1.7 190 chr3R 25847689 intergenic CR45656 -,CR45657 + chr3R 25847784 intergenic CR45656 -,CR45657 + chr3R 25847879 intergenic CR45657 +,CR45656 - chr3R_5_25845001 chr3R_25845001 RAL-890 1675 chr3R 25908678 25908709 chr3R 25908760 25908781 11 81 2.0 5.5 3.8 2.3 103 chr3R 25908678 intron CG42235 + chr3R 25908730 intron CG42235 + chr3R 25908781 intron CG42235 + chr3R_11_25905001 chr3R_25905001 RAL-890 1676 chr3R 26063199 26063222 chr3R 26063292 26063316 7 94 2.5 0.0 1.2 3.2 117 chr3R 26063199 intergenic CG14551 - chr3R 26063258 intergenic CG14551 - chr3R 26063316 intergenic CG14551 - chr3R_7_26060001 chr3R_26060001 RAL-890 1677 chr3R 26121947 26121981 chr3R 26122044 26122078 7 96 0.0 2.5 1.2 3.2 131 chr3R 26121947 intron CG31324 + chr3R 26122012 intron CG31324 + chr3R 26122078 intron CG31324 + chr3R_7_26120001 chr3R_26120001 RAL-890 1678 chr3R 26122462 26122478 chr3R 26122538 26122554 8 75 3.0 5.5 4.2 1.5 92 chr3R 26122462 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122554 intron CG31324 + chr3R_8_26120001 chr3R_26120001 RAL-890 1679 chr3R 26126552 26126570 chr3R 26126637 26126656 5 86 3.0 3.5 3.2 1.2 104 chr3R 26126552 intron CG31324 + chr3R 26126604 intron CG31324 + chr3R 26126656 intron CG31324 + chr3R_5_26125001 chr3R_26125001 RAL-890 1680 chr3R 26241434 26241446 chr3R 26241502 26241532 5 81 2.0 2.5 2.2 1.6 98 chr3R 26241434 intron CR42745 + chr3R 26241483 intron CR42745 + chr3R 26241532 intron CR42745 + chr3R_5_26240001 chr3R_26240001 RAL-890 1681 chr3R 26292107 26292137 chr3R 26292187 26292217 9 79 1.5 3.0 2.2 2.8 110 chr3R 26292107 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292217 intergenic not near genes chr3R_9_26290001 chr3R_26290001 RAL-890 1682 chr3R 26365110 26365124 chr3R 26365195 26365209 6 85 5.0 3.0 4.0 1.2 99 chr3R 26365110 intergenic not near genes chr3R 26365160 intergenic not near genes chr3R 26365209 intergenic not near genes chr3R_6_26365001 chr3R_26365001 RAL-890 1683 chr3R 26376323 26376348 chr3R 26385482 26385508 roo 14 9158 3.0 1.0 2.0 4.7 9185 chr3R 26376323 intergenic not near genes chr3R 26380916 intergenic not near genes chr3R 26385508 intergenic not near genes chr3R_14_26380001 chr3R_26380001 RAL-890 1684 chr3R 26497894 26497916 chr3R 26498025 26498047 8 130 6.5 1.5 4.0 1.6 153 chr3R 26497894 intron plum - chr3R 26497970 intron plum - chr3R 26498047 intron plum - chr3R_8_26495001 chr3R_26495001 RAL-890 1685 chr3R 26510521 26510534 chr3R 26519576 26519589 roo 8 9055 3.5 4.5 4.0 1.6 9068 chr3R 26510521 intron plum - chr3R 26515055 intron plum - chr3R 26519589 intron,5` UTR plum -,CR45226 + chr3R_8_26515001 chr3R_26515001 RAL-890 1686 chr3R 26558348 26558361 chr3R 26565657 26565672 Stalker4 7 7310 2.0 3.0 2.5 2.0 7324 chr3R 26558348 intron scrib + chr3R 26562010 intron scrib + chr3R 26565672 intron scrib + chr3R_7_26560001 chr3R_26560001 RAL-890 1687 chr3R 26641636 26641653 chr3R 26641723 26641740 11 86 3.5 2.0 2.8 2.9 104 chr3R 26641636 intergenic not near genes chr3R 26641688 intergenic not near genes chr3R 26641740 intergenic not near genes chr3R_11_26640001 chr3R_26640001 RAL-890 1688 chr3R 26642730 26642762 chr3R 26643123 26643156 jockey 6 394 4.5 1.0 2.8 1.6 426 chr3R 26642730 intergenic not near genes chr3R 26642943 intergenic not near genes chr3R 26643156 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-890 1689 chr3R 26740308 26740318 chr3R 26740382 26740394 6 76 0.5 3.5 2.0 2.0 86 chr3R 26740308 intergenic not near genes chr3R 26740351 intergenic not near genes chr3R 26740394 intergenic not near genes chr3R_6_26740001 chr3R_26740001 RAL-890 1690 chr3R 26810555 26810585 chr3R 26811040 26811070 roo 6 485 3.0 6.0 4.5 1.1 515 chr3R 26810555 intron Tl + chr3R 26810812 intron Tl + chr3R 26811070 intron Tl + chr3R_6_26810001 chr3R_26810001 RAL-890 1691 chr3R 26895263 26895280 chr3R 26895333 26895364 7 78 2.0 2.5 2.2 2.2 101 chr3R 26895263 intron T48 + chr3R 26895314 intron T48 + chr3R 26895364 intron T48 + chr3R_7_26895001 chr3R_26895001 RAL-890 1692 chr3R 27007413 27007436 chr3R 27016547 27016571 roo 12 9134 4.0 3.0 3.5 2.7 9158 chr3R 27007413 intron RYa-R + chr3R 27011992 intron RYa-R + chr3R 27016571 intron RYa-R + chr3R_12_27010001 chr3R_27010001 RAL-890 1693 chr3R 27028723 27028754 chr3R 27028802 27028833 10 79 3.0 1.5 2.2 3.1 110 chr3R 27028723 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028833 intron RYa-R + chr3R_10_27025001 chr3R_27025001 RAL-890 1694 chr3R 27030221 27030251 chr3R 27030350 27030380 10 129 3.0 0.5 1.8 3.6 159 chr3R 27030221 intron RYa-R + chr3R 27030300 intron RYa-R + chr3R 27030380 intron RYa-R + chr3R_10_27030001 chr3R_27030001 RAL-890 1695 chr3R 27140513 27140548 chr3R 27148123 27148158 412 8 7607 2.5 3.0 2.8 2.1 7645 chr3R 27140513 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_8_27140001 chr3R_27140001 RAL-890 1696 chr3R 27329485 27329496 chr3R 27329562 27329573 6 77 3.5 4.5 4.0 1.2 88 chr3R 27329485 intergenic CG3330 - chr3R 27329529 intergenic CG3330 - chr3R 27329573 intergenic CG3330 - chr3R_6_27325001 chr3R_27325001 RAL-890 1697 chr3R 27342811 27342819 chr3R 27351391 27351400 Tirant 5 8581 3.0 4.5 3.8 1.0 8589 chr3R 27342811 intron CG42534 + chr3R 27347106 intron CG42534 + chr3R 27351400 intron CG42534 + chr3R_5_27345001 chr3R_27345001 RAL-890 1698 chr3R 27393757 27393779 chr3R 27393841 27393863 7 84 0.5 3.0 1.8 2.5 106 chr3R 27393757 intron side - chr3R 27393810 intron side - chr3R 27393863 intron side - chr3R_7_27390001 chr3R_27390001 RAL-890 1699 chr3R 27405766 27405791 chr3R 27406311 27406336 9 541 5.0 2.5 3.8 1.9 570 chr3R 27405766 intron side - chr3R 27406051 intron side - chr3R 27406336 intron side - chr3R_9_27405001 chr3R_27405001 RAL-890 1700 chr3R 27470886 27470916 chr3R 27470998 27471029 8 113 1.0 2.0 1.5 3.2 143 chr3R 27470886 intergenic not near genes chr3R 27470958 intergenic not near genes chr3R 27471029 intergenic not near genes chr3R_8_27470001 chr3R_27470001 RAL-890 1701 chr3R 27492380 27492406 chr3R 27492466 27492492 13 87 2.0 1.5 1.8 4.6 112 chr3R 27492380 intergenic not near genes chr3R 27492436 intergenic not near genes chr3R 27492492 intergenic not near genes chr3R_13_27490001 chr3R_27490001 RAL-890 1702 chr3R 27521157 27521181 chr3R 27530366 27530390 roo 4 9209 1.0 0.0 0.5 2.7 9233 chr3R 27521157 intron CG12885 + chr3R 27525774 intron CG12885 + chr3R 27530390 intron CG12885 + chr3R_4_27525001 chr3R_27525001 RAL-890 1703 chr3R 27574108 27574135 chr3R 27574507 27574530 6 398 3.0 1.5 2.2 1.9 422 chr3R 27574108 intron wdb - chr3R 27574319 intron wdb - chr3R 27574530 intron wdb - chr3R_6_27570001 chr3R_27570001 RAL-890 1704 chr3R 27685765 27685796 chr3R 27685844 27685875 5 77 2.5 1.0 1.8 1.8 110 chr3R 27685765 3` UTR CG31055 - chr3R 27685820 3` UTR CG31055 - chr3R 27685875 3` UTR CG31055 - chr3R_5_27685001 chr3R_27685001 RAL-890 1705 chr3R 27706775 27706797 chr3R 27706852 27706874 9 77 3.5 3.0 3.2 2.1 99 chr3R 27706775 intergenic CG12428 -,CG12877 + chr3R 27706824 intergenic CG12428 -,CG12877 + chr3R 27706874 intergenic CG12428 -,CG12877 + chr3R_9_27705001 chr3R_27705001 RAL-890 1706 chr3R 27725563 27725598 chr3R 27731005 27731040 I-element 11 5442 2.0 3.0 2.5 3.1 5477 chr3R 27725563 intergenic not near genes chr3R 27728302 intergenic not near genes chr3R 27731040 intergenic not near genes chr3R_11_27725001 chr3R_27725001 RAL-890 1707 chr3R 27779273 27779290 chr3R 27779349 27779367 5 75 5.0 4.0 4.5 0.9 94 chr3R 27779273 exon CG34353 - chr3R 27779320 intron CG34353 - chr3R 27779367 intron CG34353 - chr3R_5_27775001 chr3R_27775001 RAL-890 1708 chr3R 27799944 27799964 chr3R 27800026 27800046 7 82 3.0 1.0 2.0 2.3 102 chr3R 27799944 intron CG34353 - chr3R 27799995 intron CG34353 - chr3R 27800046 intron CG34353 - chr3R_7_27795001 chr3R_27795001 RAL-890 1709 chr3R 27856762 27856788 chr3R 27858244 27858271 hopper2 7 1483 2.5 4.5 3.5 1.6 1509 chr3R 27856762 intron CG34353 - chr3R 27857516 intron CG34353 - chr3R 27858271 intron CG34353 - chr3R_7_27855001 chr3R_27855001 RAL-890 1710 chr3R 27862962 27862983 chr3R 27868267 27868283 Transpac 6 5303 3.5 2.0 2.8 1.6 5321 chr3R 27862962 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868283 intron CG34353 - chr3R_6_27865001 chr3R_27865001 RAL-890 1711 chr3R 27875701 27875731 chr3R 27882755 27882786 297 14 7054 4.0 4.0 4.0 2.8 7085 chr3R 27875701 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882786 intron CG34353 - chr3R_14_27875001 chr3R_27875001 RAL-890 1712 chr3R 28054442 28054470 chr3R 28054518 28054546 10 74 3.0 2.0 2.5 2.9 104 chr3R 28054442 intron CG34362 + chr3R 28054494 intron CG34362 + chr3R 28054546 intron CG34362 + chr3R_10_28050001 chr3R_28050001 RAL-890 1713 chr3R 28068493 28068509 chr3R 28073935 28073951 I-element 5 5442 1.5 2.0 1.8 1.8 5458 chr3R 28068493 intron CG34362 + chr3R 28071222 intron CG34362 + chr3R 28073951 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-890 1714 chr3R 28068512 28068521 chr3R 28073933 28073963 I-element 5 5437 1.5 2.0 1.8 1.8 5451 chr3R 28068512 intron CG34362 + chr3R 28071238 intron CG34362 + chr3R 28073963 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-890 1715 chr3R 28139663 28139691 chr3R 28139749 28139776 6 86 3.5 4.5 4.0 1.2 113 chr3R 28139663 intergenic not near genes chr3R 28139720 intergenic not near genes chr3R 28139776 intergenic not near genes chr3R_6_28135001 chr3R_28135001 RAL-890 1716 chr3R 28253342 28253373 chr3R 28255846 28255883 jockey 12 2510 4.0 1.5 2.8 3.2 2541 chr3R 28253342 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255883 intergenic not near genes chr3R_12_28250001 chr3R_28250001 RAL-890 1717 chr3R 28331508 28331529 chr3R 28331587 28331608 5 79 1.5 1.5 1.5 2.0 100 chr3R 28331508 intron larp - chr3R 28331558 intron larp - chr3R 28331608 intron larp - chr3R_5_28330001 chr3R_28330001 RAL-890 1718 chr3R 28345653 28345667 chr3R 28345729 28345729 5 73 2.0 1.5 1.8 1.8 76 chr3R 28345653 intergenic Moca-cyp + chr3R 28345691 intergenic not near genes chr3R 28345729 intergenic not near genes chr3R_5_28345001 chr3R_28345001 RAL-890 1719 chr3R 28352522 28352541 chr3R 28352857 28352880 6 339 2.0 3.0 2.5 1.7 358 chr3R 28352522 exon Or98b + chr3R 28352701 exon Or98b + chr3R 28352880 exon Or98b + chr3R_6_28350001 chr3R_28350001 RAL-890 1720 chr3R 28393698 28393724 chr3R 28393798 28393824 5 100 3.5 1.5 2.5 1.4 126 chr3R 28393698 intergenic not near genes chr3R 28393761 intergenic not near genes chr3R 28393824 intergenic not near genes chr3R_5_28390001 chr3R_28390001 RAL-890 1721 chr3R 28415726 28415759 chr3R 28415811 28415827 11 81 4.5 2.0 3.2 2.6 101 chr3R 28415726 intergenic not near genes chr3R 28415776 intergenic not near genes chr3R 28415827 intergenic not near genes chr3R_11_28415001 chr3R_28415001 RAL-890 1722 chr3R 28425207 28425217 chr3R 28425263 28425265 5 66 3.0 2.0 2.5 1.4 58 chr3R 28425207 intron beat-VI + chr3R 28425236 intron beat-VI + chr3R 28425265 intron beat-VI + chr3R_5_28425001 chr3R_28425001 RAL-890 1723 chr3R 28478493 28478522 chr3R 28478569 28478598 9 74 2.0 4.5 3.2 2.1 105 chr3R 28478493 intergenic not near genes chr3R 28478546 intergenic not near genes chr3R 28478598 intergenic not near genes chr3R_9_28475001 chr3R_28475001 RAL-890 1724 chr3R 28479147 28479163 chr3R 28479244 28479261 4 98 5.0 1.5 3.2 1.0 114 chr3R 28479147 intergenic not near genes chr3R 28479204 intergenic not near genes chr3R 28479261 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-890 1725 chr3R 28633193 28633220 chr3R 28633272 28633299 10 79 4.5 4.0 4.2 1.9 106 chr3R 28633193 intron CG10011 - chr3R 28633246 intron CG10011 - chr3R 28633299 intron CG10011 - chr3R_10_28630001 chr3R_28630001 RAL-890 1726 chr3R 28711742 28711771 chr3R 28711831 28711860 6 89 1.5 1.0 1.2 2.7 118 chr3R 28711742 intron htt + chr3R 28711801 intron htt + chr3R 28711860 intron htt + chr3R_6_28710001 chr3R_28710001 RAL-890 1727 chr3R 28712894 28712907 chr3R 28712983 28712996 6 89 4.0 0.0 2.0 2.0 102 chr3R 28712894 intron htt + chr3R 28712945 intron htt + chr3R 28712996 intron htt + chr3R_6_28710001 chr3R_28710001 RAL-890 1728 chr3R 28742485 28742515 chr3R 28742561 28742591 13 76 1.5 3.5 2.5 3.7 106 chr3R 28742485 intron AstA-R2 - chr3R 28742538 intron AstA-R2 - chr3R 28742591 intron AstA-R2 - chr3R_13_28740001 chr3R_28740001 RAL-890 1729 chr3R 28763908 28763922 chr3R 28771351 28771365 Stalker4 8 7443 0.0 2.0 1.0 4.0 7457 chr3R 28763908 intergenic not near genes chr3R 28767636 intergenic not near genes chr3R 28771365 intergenic not near genes chr3R_8_28765001 chr3R_28765001 RAL-890 1730 chr3R 28775022 28775051 chr3R 28775161 28775190 10 138 3.0 5.0 4.0 2.0 168 chr3R 28775022 intergenic not near genes chr3R 28775106 intergenic not near genes chr3R 28775190 intergenic not near genes chr3R_10_28775001 chr3R_28775001 RAL-890 1731 chr3R 28792874 28792899 chr3R 28797969 28797993 jockey 5 5094 0.5 2.5 1.5 2.0 5119 chr3R 28792874 intergenic not near genes chr3R 28795434 intergenic not near genes chr3R 28797993 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-890 1732 chr3R 28830900 28830923 chr3R 28830978 28831001 7 76 3.5 6.0 4.8 1.2 101 chr3R 28830900 intron WASp - chr3R 28830950 intron WASp - chr3R 28831001 intron WASp - chr3R_7_28830001 chr3R_28830001 RAL-890 1733 chr3R 21907534 21907535 chr3R 28831801 28831803 46 6924267 15.0 14.0 14.5 3.0 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_46_25365001 chr3R_25365001 RAL-890 1734 chr3R 29032744 29032776 chr3R 29032821 29032848 12 76 3.0 0.5 1.8 4.3 104 chr3R 29032744 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032796 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032848 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_12_29030001 chr3R_29030001 RAL-890 1735 chr3R 29054271 29054299 chr3R 29054365 29054394 6 95 0.0 4.0 2.0 2.0 123 chr3R 29054271 intergenic CG11843 +,CG11842 + chr3R 29054332 intergenic CG11843 +,CG11842 + chr3R 29054394 5` UTR CG11843 + chr3R_6_29050001 chr3R_29050001 RAL-890 1736 chr3R 29070057 29070073 chr3R 29070138 29070154 10 81 6.5 4.5 5.5 1.5 97 chr3R 29070057 intron CG11873 + chr3R 29070106 intron CG11873 + chr3R 29070154 intron CG11873 + chr3R_10_29070001 chr3R_29070001 RAL-890 1737 chr3R 29076139 29076147 chr3R 29076308 29076316 4 169 0.0 2.0 1.0 2.0 177 chr3R 29076139 intron CG11873 + chr3R 29076228 intron CG11873 + chr3R 29076316 intron CG11873 + chr3R_4_29075001 chr3R_29075001 RAL-890 1738 chr3R 29079391 29079406 chr3R 29080763 29080778 NOF 7 1372 4.5 2.5 3.5 1.6 1387 chr3R 29079391 intron CG11873 + chr3R 29080084 intron CG11873 + chr3R 29080778 intron CG11873 + chr3R_7_29080001 chr3R_29080001 RAL-890 1739 chr3R 29213061 29213091 chr3R 29213143 29213174 15 83 1.5 4.0 2.8 3.9 113 chr3R 29213061 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213174 intergenic not near genes chr3R_15_29210001 chr3R_29210001 RAL-890 1740 chr3R 29237273 29237281 chr3R 29239283 29239297 6 2014 11.0 5.0 8.0 0.7 2024 chr3R 29237273 exon CG11951 - chr3R 29238285 intron CG11951 - chr3R 29239297 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-890 1741 chr3R 29240311 29240343 chr3R 29240395 29240427 9 84 4.5 2.0 3.2 2.1 116 chr3R 29240311 5` UTR CG31427 - chr3R 29240369 intergenic CG31427 -,CG31445 - chr3R 29240427 intergenic CG31427 -,CG31445 - chr3R_9_29240001 chr3R_29240001 RAL-890 1742 chr3R 29264192 29264200 chr3R 29264294 29264301 4 102 0.0 3.0 1.5 1.6 109 chr3R 29264192 intergenic not near genes chr3R 29264246 intergenic not near genes chr3R 29264301 intergenic not near genes chr3R_4_29260001 chr3R_29260001 RAL-890 1743 chr3R 29319824 29319859 chr3R 29320143 29320178 jockey 9 319 3.5 3.0 3.2 2.1 354 chr3R 29319824 intergenic Cnx99A - chr3R 29320001 intergenic Cnx99A - chr3R 29320178 intergenic not near genes chr3R_9_29320001 chr3R_29320001 RAL-890 1744 chr3R 29332224 29332381 chr3R 29332304 29332468 7 86 0.5 2.5 1.5 2.8 244 chr3R 29332224 intergenic not near genes chr3R 29332346 intergenic not near genes chr3R 29332468 intergenic not near genes chr3R_7_29330001 chr3R_29330001 RAL-890 1745 chr3R 29406616 29406643 chr3R 29407899 29407929 jockey 7 1284 3.5 3.5 3.5 1.6 1313 chr3R 29406616 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407929 intron Ptp99A + chr3R_7_29405001 chr3R_29405001 RAL-890 1746 chr3R 29443798 29443823 chr3R 29443875 29443900 8 77 4.0 1.5 2.8 2.1 102 chr3R 29443798 intron Ptp99A + chr3R 29443849 intron Ptp99A + chr3R 29443900 intron Ptp99A + chr3R_8_29440001 chr3R_29440001 RAL-890 1747 chr3R 29447832 29447843 chr3R 29447928 29447950 5 99 4.5 1.0 2.8 1.3 118 chr3R 29447832 intron Ptp99A + chr3R 29447891 intron Ptp99A + chr3R 29447950 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-890 1748 chr3R 29448288 29448298 chr3R 29449303 29449311 4 1017 4.0 3.0 3.5 0.9 1023 chr3R 29448288 intron Ptp99A + chr3R 29448800 intron Ptp99A + chr3R 29449311 intron Ptp99A + chr3R_4_29445001 chr3R_29445001 RAL-890 1749 chr3R 29449354 29449379 chr3R 29449432 29449457 9 78 3.0 1.5 2.2 2.8 103 chr3R 29449354 intron Ptp99A + chr3R 29449406 intron Ptp99A + chr3R 29449457 intron Ptp99A + chr3R_9_29445001 chr3R_29445001 RAL-890 1750 chr3R 29498901 29498935 chr3R 29499031 29499065 22 130 2.5 3.5 3.0 5.5 164 chr3R 29498901 3` UTR CG2010 + chr3R 29498983 intergenic Trc8 -,CG2010 + chr3R 29499065 3` UTR Trc8 - chr3R_22_29495001 chr3R_29495001 RAL-890 1751 chr3R 29604121 29604137 chr3R 29604200 29604216 5 79 0.0 1.0 0.5 3.3 95 chr3R 29604121 intron alph + chr3R 29604168 intron alph + chr3R 29604216 intron alph + chr3R_5_29600001 chr3R_29600001 RAL-890 1752 chr3R 29708556 29708585 chr3R 29708634 29708657 5 76 1.0 0.5 0.8 2.8 101 chr3R 29708556 intergenic not near genes chr3R 29708606 intergenic not near genes chr3R 29708657 intergenic not near genes chr3R_5_29705001 chr3R_29705001 RAL-890 1753 chr3R 29776533 29776558 chr3R 29776684 29776709 6 151 5.0 3.5 4.2 1.2 176 chr3R 29776533 intron kay + chr3R 29776621 intron kay + chr3R 29776709 intron kay + chr3R_6_29775001 chr3R_29775001 RAL-890 1754 chr3R 29831816 29831839 chr3R 29831901 29831924 5 85 4.0 1.0 2.5 1.4 108 chr3R 29831816 exon Atg16 - chr3R 29831870 intron Atg16 - chr3R 29831924 exon Atg16 - chr3R_5_29830001 chr3R_29830001 RAL-890 1755 chr3R 29882020 29882053 chr3R 29891177 29891210 roo 17 9156 5.5 3.5 4.5 3.1 9190 chr3R 29882020 intron CG31038 + chr3R 29886615 intron CG31038 + chr3R 29891210 intron CG31038 + chr3R_17_29885001 chr3R_29885001 RAL-890 1756 chr3R 30084857 30084880 chr3R 30086324 30086347 hobo 7 1467 4.0 1.5 2.8 1.8 1490 chr3R 30084857 intron sima + chr3R 30085602 intron sima + chr3R 30086347 intron sima + chr3R_7_30085001 chr3R_30085001 RAL-890 1757 chr3R 30170764 30170786 chr3R 30170850 30170873 9 86 1.5 5.0 3.2 2.1 109 chr3R 30170764 intron CG31028 - chr3R 30170818 intron CG31028 - chr3R 30170873 intron CG31028 - chr3R_9_30170001 chr3R_30170001 RAL-890 1758 chr3R 30173863 30173884 chr3R 30173981 30174002 5 117 4.0 1.5 2.8 1.3 139 chr3R 30173863 intron Mlc2 - chr3R 30173932 intron Mlc2 - chr3R 30174002 intron Mlc2 - chr3R_5_30170001 chr3R_30170001 RAL-890 1759 chr3R 30177742 30177774 chr3R 30177859 30177891 4 117 1.5 1.5 1.5 1.6 149 chr3R 30177742 intergenic CG1983 -,CG15530 + chr3R 30177816 intergenic CG15530 +,CG1983 - chr3R 30177891 5` UTR CG15530 + chr3R_4_30175001 chr3R_30175001 RAL-890 1760 chr3R 30210663 30210672 chr3R 30210743 30210752 4 80 0.0 7.0 3.5 0.9 89 chr3R 30210663 intergenic CecA1 +,Anp + chr3R 30210708 intergenic CecA1 +,Anp + chr3R 30210752 intergenic CecA1 +,Anp + chr3R_4_30210001 chr3R_30210001 RAL-890 1761 chr3R 30396215 30396245 chr3R 30404481 30404511 roo 7 8266 3.0 5.0 4.0 1.4 8296 chr3R 30396215 intergenic not near genes chr3R 30400363 intergenic not near genes chr3R 30404511 5` UTR CR45570 + chr3R_7_30400001 chr3R_30400001 RAL-890 1762 chr3R 30456397 30456425 chr3R 30456477 30456505 13 79 3.0 4.5 3.8 2.7 108 chr3R 30456397 intergenic CG2224 - chr3R 30456451 3` UTR CG2224 - chr3R 30456505 3` UTR CG2224 - chr3R_13_30455001 chr3R_30455001 RAL-890 1763 chr3R 30458010 30458048 chr3R 30458090 30458128 14 78 2.0 4.0 3.0 3.5 118 chr3R 30458010 intron CG2224 - chr3R 30458069 intron CG2224 - chr3R 30458128 intron CG2224 - chr3R_14_30455001 chr3R_30455001 RAL-890 1764 chr3R 30480474 30480507 chr3R 30482942 30482975 jockey 8 2468 1.0 3.0 2.0 2.7 2501 chr3R 30480474 intron PH4alphaEFB + chr3R 30481724 intron PH4alphaEFB + chr3R 30482975 intron PH4alphaEFB + chr3R_8_30480001 chr3R_30480001 RAL-890 1765 chr3R 30498413 30498432 chr3R 30498613 30498632 7 200 0.0 2.5 1.2 3.2 219 chr3R 30498413 intron PH4alphaNE1 - chr3R 30498522 intron PH4alphaNE1 - chr3R 30498632 intron PH4alphaNE1 - chr3R_7_30495001 chr3R_30495001 RAL-890 1766 chr3R 30539806 30539837 chr3R 30539883 30539914 6 77 1.5 0.5 1.0 3.0 108 chr3R 30539806 intron tmod + chr3R 30539860 intron tmod + chr3R 30539914 intron tmod + chr3R_6_30535001 chr3R_30535001 RAL-890 1767 chr3R 30552256 30552267 chr3R 30552332 30552344 6 77 3.5 1.5 2.5 1.7 88 chr3R 30552256 intron tmod + chr3R 30552300 intron tmod + chr3R 30552344 intron tmod + chr3R_6_30550001 chr3R_30550001 RAL-890 1768 chr3R 30679535 30679551 chr3R 30687003 30687018 blood 5 7468 5.5 5.5 5.5 0.8 7483 chr3R 30679535 intergenic not near genes chr3R 30683276 intergenic not near genes chr3R 30687018 intergenic not near genes chr3R_5_30680001 chr3R_30680001 RAL-890 1769 chr3R 30733321 30733349 chr3R 30733411 30733426 8 88 3.5 3.0 3.2 1.9 105 chr3R 30733321 intergenic not near genes chr3R 30733374 intergenic not near genes chr3R 30733426 intergenic not near genes chr3R_8_30730001 chr3R_30730001 RAL-890 1770 chr3R 30818809 30818846 chr3R 30820374 30820400 1360 8 1563 3.0 3.0 3.0 2.0 1591 chr3R 30818809 intron cindr + chr3R 30819604 intron cindr + chr3R 30820400 intron cindr + chr3R_8_30815001 chr3R_30815001 RAL-890 1771 chr3R 30859405 30859427 chr3R 30859483 30859504 6 78 3.5 3.5 3.5 1.3 99 chr3R 30859405 intergenic not near genes chr3R 30859454 intergenic not near genes chr3R 30859504 intergenic not near genes chr3R_6_30855001 chr3R_30855001 RAL-890 1772 chr3R 30996638 30996669 chr3R 30996862 30996893 9 221 2.0 5.5 3.8 1.9 255 chr3R 30996638 intron 5-HT7 - chr3R 30996766 intron 5-HT7 - chr3R 30996893 intron 5-HT7 - chr3R_9_30995001 chr3R_30995001 RAL-890 1773 chr3R 31000298 31000307 chr3R 31000399 31000417 4 105 1.0 1.5 1.2 1.8 119 chr3R 31000298 intron 5-HT7 - chr3R 31000358 intron 5-HT7 - chr3R 31000417 intron 5-HT7 - chr3R_4_31000001 chr3R_31000001 RAL-890 1774 chr3R 31074239 31074249 chr3R 31081837 31081847 springer 4 7598 4.0 0.5 2.2 1.2 7608 chr3R 31074239 intron Sox100B + chr3R 31078043 intron Sox100B + chr3R 31081847 intron Sox100B + chr3R_4_31075001 chr3R_31075001 RAL-890 1775 chr3R 31084911 31084936 chr3R 31084987 31085012 5 76 1.5 3.0 2.2 1.6 101 chr3R 31084911 intergenic not near genes chr3R 31084962 intergenic not near genes chr3R 31085012 intergenic not near genes chr3R_5_31080001 chr3R_31080001 RAL-890 1776 chr3R 31197744 31197772 chr3R 31197830 31197858 6 82 3.5 2.0 2.8 1.6 114 chr3R 31197744 intron CG1544 + chr3R 31197801 intron CG1544 + chr3R 31197858 intron CG1544 + chr3R_6_31195001 chr3R_31195001 RAL-890 1777 chr3R 31265280 31265294 chr3R 31265425 31265439 5 144 7.0 1.0 4.0 1.0 159 chr3R 31265280 intergenic ppk24 + chr3R 31265360 intergenic ppk24 + chr3R 31265439 intergenic ppk24 + chr3R_5_31265001 chr3R_31265001 RAL-890 1778 chr3R 31279372 31279383 chr3R 31285563 31285574 diver 5 6189 4.5 1.0 2.8 1.3 6202 chr3R 31279372 intergenic not near genes chr3R 31282473 intergenic not near genes chr3R 31285574 intergenic not near genes chr3R_5_31280001 chr3R_31280001 RAL-890 1779 chr3R 31279386 31279408 chr3R 31285562 31285599 diver 12 6182 1.0 1.0 1.0 6.0 6213 chr3R 31279386 intergenic not near genes chr3R 31282492 intergenic not near genes chr3R 31285599 intergenic not near genes chr3R_12_31280001 chr3R_31280001 RAL-890 1780 chr3R 31413099 31413122 chr3R 31418295 31418322 copia 11 5198 1.5 3.0 2.2 3.4 5223 chr3R 31413099 intron Gprk2 + chr3R 31415710 intron Gprk2 + chr3R 31418322 intron Gprk2 + chr3R_11_31415001 chr3R_31415001 RAL-890 1781 chr3R 31426878 31426911 chr3R 31426970 31427003 11 90 4.5 3.5 4.0 2.2 125 chr3R 31426878 intron Gprk2 + chr3R 31426940 intron Gprk2 + chr3R 31427003 intron Gprk2 + chr3R_11_31425001 chr3R_31425001 RAL-890 1782 chr3R 31431115 31431134 chr3R 31431201 31431220 9 86 1.5 7.5 4.5 1.6 105 chr3R 31431115 intron Gprk2 + chr3R 31431168 intron Gprk2 + chr3R 31431220 intron Gprk2 + chr3R_9_31430001 chr3R_31430001 RAL-890 1783 chr3R 31442270 31442290 chr3R 31442355 31442375 11 85 6.0 5.5 5.8 1.6 105 chr3R 31442270 intron Gprk2 + chr3R 31442322 intron Gprk2 + chr3R 31442375 intron Gprk2 + chr3R_11_31440001 chr3R_31440001 RAL-890 1784 chr3R 31538487 31538522 chr3R 31538565 31538600 13 78 2.0 3.0 2.5 3.7 113 chr3R 31538487 intergenic not near genes chr3R 31538544 intergenic not near genes chr3R 31538600 intergenic not near genes chr3R_13_31535001 chr3R_31535001 RAL-890 1785 chr3R 31637878 31637894 chr3R 31637966 31637982 5 86 3.0 5.0 4.0 1.0 104 chr3R 31637878 intron kek6 + chr3R 31637930 intron kek6 + chr3R 31637982 intron kek6 + chr3R_5_31635001 chr3R_31635001 RAL-890 1786 chr3R 31679951 31679968 chr3R 31680031 31680048 4 80 2.0 2.0 2.0 1.3 97 chr3R 31679951 intergenic CG11550 - chr3R 31680000 intergenic CG11550 - chr3R 31680048 intergenic CG11550 - chr3R_4_31675001 chr3R_31675001 RAL-890 1787 chr3R 31691532 31691557 chr3R 31696298 31696320 Doc 8 4765 2.0 3.5 2.8 2.1 4788 chr3R 31691532 intergenic not near genes chr3R 31693926 intergenic not near genes chr3R 31696320 intergenic not near genes chr3R_8_31690001 chr3R_31690001 RAL-890 1788 chr3R 31820576 31820584 chr3R 31820633 31820661 5 69 3.0 3.0 3.0 1.2 85 chr3R 31820576 intron RhoGAP100F + chr3R 31820618 intron RhoGAP100F + chr3R 31820661 intron RhoGAP100F + chr3R_5_31820001 chr3R_31820001 RAL-890 1789 chr3R 31858199 31858205 chr3R 31858275 31858304 4 95 0.0 1.0 0.5 2.7 105 chr3R 31858199 intron heph - chr3R 31858252 intron heph - chr3R 31858304 intron heph - chr3R_4_31855001 chr3R_31855001 RAL-890 1790 chr3R 31961341 31961364 chr3R 31961423 31961447 7 82 3.0 2.0 2.5 2.0 106 chr3R 31961341 intron heph - chr3R 31961394 intron heph - chr3R 31961447 intron heph - chr3R_7_31960001 chr3R_31960001 RAL-890 1791 chr3R 31976542 31976572 chr3R 31976823 31976853 9 281 0.0 1.5 0.8 5.0 311 chr3R 31976542 intron heph - chr3R 31976698 intron heph - chr3R 31976853 intron heph - chr3R_9_31975001 chr3R_31975001 RAL-890 1792 chr3R 31997994 31998023 chr3R 32005464 32005485 blood 14 7469 0.5 4.0 2.2 4.4 7491 chr3R 31997994 intron heph - chr3R 32001740 intron heph - chr3R 32005485 intron heph - chr3R_14_32000001 chr3R_32000001 RAL-890 1793 chr3R 32014842 32014873 chr3R 32015116 32015147 16 272 4.0 2.0 3.0 4.0 305 chr3R 32014842 5` UTR heph - chr3R 32014994 5` UTR heph - chr3R 32015147 5` UTR heph - chr3R_16_32010001 chr3R_32010001 RAL-890 1794 chr4 76498 76510 chr4 81941 81953 I-element 5 5442 3.5 5.0 4.2 1.0 5455 chr4 76498 intron pan + chr4 79226 intron pan + chr4 81953 intron pan + chr4_5_75001 chr4_75001 RAL-890 1795 chr4 319989 320004 chr4 328165 328180 Stalker2 5 8176 5.5 4.0 4.8 0.9 8191 chr4 319989 3` UTR CG32850 + chr4 324084 intron CG32850 + chr4 328180 3` UTR CG32850 + chr4_5_320001 chr4_320001 RAL-890 1796 chr4 671610 671621 chr4 680193 680204 Tirant 7 8583 6.0 5.0 5.5 1.1 8594 chr4 671610 intron CG11360 + chr4 675907 intron CG11360 + chr4 680204 intron CG11360 + chr4_7_675001 chr4_675001 RAL-890 1797 chr4 959622 959657 chr4 959801 959836 13 179 2.0 2.0 2.0 4.3 214 chr4 959622 intergenic CR44030 +,CR45201 - chr4 959729 5` UTR CR44030 + chr4 959836 5` UTR CR44030 + chr4_13_955001 chr4_955001 RAL-890 1798 chrX 295860 295882 chrX 303480 303502 412 7 7619 1.0 2.0 1.5 2.8 7642 chrX 295860 intron CG3777 + chrX 299681 intron CG3777 + chrX 303502 intron CG3777 + chrX_7_295001 chrX_295001 RAL-890 1799 chrX 318474 318501 chrX 323560 323587 flea 5 5085 2.5 2.0 2.2 1.6 5113 chrX 318474 intron,intron CG3777 +,CG32816 - chrX 321030 intron,intron CG3777 +,CG32816 - chrX 323587 intron,intron CG3777 +,CG32816 - chrX_5_320001 chrX_320001 RAL-890 1800 chrX 428419 428452 chrX 434603 434637 3S18 9 6184 2.0 1.5 1.8 3.2 6218 chrX 428419 intron CG32816 - chrX 431528 intron CG32816 - chrX 434637 intron CG32816 - chrX_9_430001 chrX_430001 RAL-890 1801 chrX 551424 551452 chrX 558986 559014 412 7 7560 2.0 4.0 3.0 1.8 7590 chrX 551424 intron Appl + chrX 555219 intron Appl + chrX 559014 intron Appl + chrX_7_555001 chrX_555001 RAL-890 1802 chrX 780592 780599 chrX 780668 780675 4 76 5.0 0.0 2.5 1.1 83 chrX 780592 intron fz3 + chrX 780634 intron fz3 + chrX 780675 intron fz3 + chrX_4_780001 chrX_780001 RAL-890 1803 chrX 802290 802311 chrX 802367 802385 4 76 4.5 5.0 4.8 0.7 95 chrX 802290 exon CG13359 - chrX 802338 exon CG13359 - chrX 802385 exon CG13359 - chrX_4_800001 chrX_800001 RAL-890 1804 chrX 812270 812298 chrX 817901 817929 297 4 5631 1.0 2.0 1.5 1.6 5659 chrX 812270 intron CG43867 - chrX 815100 intron CG43867 - chrX 817929 intron CG43867 - chrX_4_815001 chrX_815001 RAL-890 1805 chrX 827623 827635 chrX 835413 835427 roo 6 7792 2.0 7.0 4.5 1.1 7804 chrX 827623 intron CG43867 - chrX 831525 intron CG43867 - chrX 835427 intron CG43867 - chrX_6_830001 chrX_830001 RAL-890 1806 chrX 906711 906734 chrX 908500 908523 S-element 5 1789 2.0 3.5 2.8 1.3 1812 chrX 906711 intron CG43867 - chrX 907617 intron CG43867 - chrX 908523 intron CG43867 - chrX_5_905001 chrX_905001 RAL-890 1807 chrX 1053117 1053123 chrX 16983076 16983076 8 15929958 7.0 2.5 4.8 1.4 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_8_9015001 chrX_9015001 RAL-890 1808 chrX 1357779 1357808 chrX 1367949 1367978 Doc 10 10170 2.5 4.0 3.2 2.4 10199 chrX 1357779 intergenic png - chrX 1362878 intergenic not near genes chrX 1367978 intergenic not near genes chrX_10_1360001 chrX_1360001 RAL-890 1809 chrX 1518047 1518071 chrX 1523446 1523470 jockey 11 5400 3.0 5.0 4.0 2.2 5423 chrX 1518047 intergenic inc + chrX 1520758 intergenic not near genes chrX 1523470 intergenic not near genes chrX_11_1520001 chrX_1520001 RAL-890 1810 chrX 1627985 1627997 chrX 1635453 1635465 gtwin 4 7468 3.5 1.5 2.5 1.1 7480 chrX 1627985 intron,intron Mur2B -,br + chrX 1631725 intron,intron Mur2B -,br + chrX 1635465 intron,intron Mur2B -,br + chrX_4_1630001 chrX_1630001 RAL-890 1811 chrX 1770666 1770699 chrX 1770751 1770785 7 86 0.5 1.5 1.0 3.5 119 chrX 1770666 intergenic not near genes chrX 1770726 intergenic not near genes chrX 1770785 intergenic not near genes chrX_7_1770001 chrX_1770001 RAL-890 1812 chrX 1930545 1930563 chrX 1938116 1938134 opus 4 7570 2.0 5.0 3.5 0.9 7589 chrX 1930545 intergenic CG11596 + chrX 1934340 intergenic not near genes chrX 1938134 3` UTR CG3857 - chrX_4_1930001 chrX_1930001 RAL-890 1813 chrX 1968283 1968361 chrX 1968497 1968524 4 201 13.5 21.0 17.2 0.2 241 chrX 1968283 intron Hr4 + chrX 1968404 intron Hr4 + chrX 1968524 intron Hr4 + chrX_4_1965001 chrX_1965001 RAL-890 1814 chrX 2023957 2023976 chrX 2024080 2024080 7 119 16.5 9.5 13.0 0.5 123 chrX 2023957 3` UTR,3` UTR east +,Actn - chrX 2024018 3` UTR,3` UTR east +,Actn - chrX 2024080 3` UTR,3` UTR east +,Actn - chrX_7_2020001 chrX_2020001 RAL-890 1815 chrX 2031143 2031173 chrX 2031230 2031237 5 79 1.0 1.0 1.0 2.5 94 chrX 2031143 intron Actn - chrX 2031190 intron Actn - chrX 2031237 intron Actn - chrX_5_2030001 chrX_2030001 RAL-890 1816 chrX 2096363 2096388 chrX 2096456 2096480 9 91 1.5 0.5 1.0 4.5 117 chrX 2096363 intron csw + chrX 2096422 intron csw + chrX 2096480 intron csw + chrX_9_2095001 chrX_2095001 RAL-890 1817 chrX 2399835 2399865 chrX 2408188 2408217 roo 6 8350 3.5 3.0 3.2 1.4 8382 chrX 2399835 intergenic not near genes chrX 2404026 intergenic not near genes chrX 2408217 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-890 1818 chrX 2539259 2539286 chrX 2539478 2539507 7 221 2.0 2.5 2.2 2.2 248 chrX 2539259 intron trol - chrX 2539383 intron trol - chrX 2539507 intron trol - chrX_7_2535001 chrX_2535001 RAL-890 1819 chrX 2578820 2578832 chrX 2578924 2578936 7 104 2.0 6.0 4.0 1.4 116 chrX 2578820 intergenic Pdfr +,Vha36-3 - chrX 2578878 intergenic Vha36-3 -,Pdfr + chrX 2578936 intergenic Vha36-3 -,Pdfr + chrX_7_2575001 chrX_2575001 RAL-890 1820 chrX 2664390 2664420 chrX 2665536 2665566 1360 12 1146 3.0 3.0 3.0 3.0 1176 chrX 2664390 intron sgg + chrX 2664978 intron sgg + chrX 2665566 intron sgg + chrX_12_2660001 chrX_2660001 RAL-890 1821 chrX 3109444 3109472 chrX 3109521 3109549 7 77 3.0 1.5 2.2 2.2 105 chrX 3109444 intron kirre + chrX 3109496 intron kirre + chrX 3109549 intron kirre + chrX_7_3105001 chrX_3105001 RAL-890 1822 chrX 3203462 3203495 chrX 3203661 3203694 7 199 3.0 0.5 1.8 2.5 232 chrX 3203462 intron dnc + chrX 3203578 intron dnc + chrX 3203694 intron dnc + chrX_7_3200001 chrX_3200001 RAL-890 1823 chrX 3306348 3306358 chrX 3306430 3306439 5 82 2.0 0.0 1.0 2.5 91 chrX 3306348 intron dnc + chrX 3306394 intron dnc + chrX 3306439 intron dnc + chrX_5_3305001 chrX_3305001 RAL-890 1824 chrX 3415028 3415042 chrX 3421211 3421227 3S18 5 6185 2.0 3.5 2.8 1.3 6199 chrX 3415028 intron,intron CR44999 +,CG12535 - chrX 3418128 intron,intron CR44999 +,CG12535 - chrX 3421227 intron,intron CR44999 +,CG12535 - chrX_5_3415001 chrX_3415001 RAL-890 1825 chrX 3459990 3460008 chrX 3460067 3460085 8 77 3.5 2.5 3.0 2.0 95 chrX 3459990 intron,intron CR44999 +,CG16782 - chrX 3460038 intron,5` UTR CR44999 +,CG16782 - chrX 3460085 intron,5` UTR CR44999 +,CG16782 - chrX_8_3460001 chrX_3460001 RAL-890 1826 chrX 3493089 3493117 chrX 3502248 3502276 roo 4 9159 3.0 0.5 1.8 1.4 9187 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497682 intron,intron CR44999 +,Gas8 - chrX 3502276 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-890 1827 chrX 3513762 3513790 chrX 3513845 3513873 9 83 0.5 1.5 1.0 4.5 111 chrX 3513762 intron,intron CR44999 +,CG32791 - chrX 3513818 intron,intron CR44999 +,CG32791 - chrX 3513873 intron,intron CR44999 +,CG32791 - chrX_9_3510001 chrX_3510001 RAL-890 1828 chrX 3597550 3597578 chrX 3619718 3619746 roo 9 22167 2.5 3.5 3.0 2.2 22196 chrX 3597550 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619746 intron AstA-R1 + chrX_9_3605001 chrX_3605001 RAL-890 1829 chrX 3630548 3630573 chrX 3630624 3630649 7 76 2.0 2.0 2.0 2.3 101 chrX 3630548 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630649 intron AstA-R1 + chrX_7_3630001 chrX_3630001 RAL-890 1830 chrX 3713103 3713135 chrX 3713211 3713244 4 108 3.0 2.0 2.5 1.1 141 chrX 3713103 intron Rala - chrX 3713174 intron Rala - chrX 3713244 intron Rala - chrX_4_3710001 chrX_3710001 RAL-890 1831 chrX 3866105 3866136 chrX 3866182 3866214 11 76 2.0 0.5 1.2 5.0 109 chrX 3866105 intron yin - chrX 3866160 intron yin - chrX 3866214 intron yin - chrX_11_3865001 chrX_3865001 RAL-890 1832 chrX 3881270 3881304 chrX 3881407 3881443 8 138 3.5 2.0 2.8 2.1 173 chrX 3881270 intron VhaAC39-1 + chrX 3881356 intron VhaAC39-1 + chrX 3881443 intron VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-890 1833 chrX 4029644 4029669 chrX 4029823 4029848 4 179 2.5 3.0 2.8 1.1 204 chrX 4029644 intergenic not near genes chrX 4029746 intergenic not near genes chrX 4029848 intergenic not near genes chrX_4_4025001 chrX_4025001 RAL-890 1834 chrX 4101892 4101897 chrX 4101971 4101977 5 80 1.0 7.0 4.0 1.0 85 chrX 4101892 exon CG15375 + chrX 4101934 exon CG15375 + chrX 4101977 exon CG15375 + chrX_5_4100001 chrX_4100001 RAL-890 1835 chrX 4132669 4132701 chrX 4132837 4132868 11 167 2.5 4.5 3.5 2.4 199 chrX 4132669 3` UTR GlcAT-I + chrX 4132768 3` UTR GlcAT-I + chrX 4132868 intergenic Fas2 -,GlcAT-I + chrX_11_4130001 chrX_4130001 RAL-890 1836 chrX 4343887 4343897 chrX 4344001 4344011 4 114 1.0 3.5 2.2 1.2 124 chrX 4343887 intron norpA + chrX 4343949 intron norpA + chrX 4344011 intron norpA + chrX_4_4340001 chrX_4340001 RAL-890 1837 chrX 4415309 4415338 chrX 4415382 4415414 8 75 1.5 2.0 1.8 2.9 105 chrX 4415309 intron,intron CR32773 -,bi + chrX 4415362 intron,intron CR32773 -,bi + chrX 4415414 intron,intron CR32773 -,bi + chrX_8_4415001 chrX_4415001 RAL-890 1838 chrX 4660820 4660835 chrX 4660919 4660934 6 99 5.0 0.0 2.5 1.7 114 chrX 4660820 intron CG3009 - chrX 4660877 intron CG3009 - chrX 4660934 intron CG3009 - chrX_6_4660001 chrX_4660001 RAL-890 1839 chrX 4731815 4731847 chrX 4736907 4736907 jockey 6 5087 3.5 1.5 2.5 1.7 5092 chrX 4731815 intergenic not near genes chrX 4734361 intergenic not near genes chrX 4736907 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-890 1840 chrX 4738935 4738941 chrX 21534506 21534512 5 16795571 5.0 4.5 4.8 0.9 16795577 chrX 4738935 intergenic not near genes chrX 13136724 intergenic not near genes chrX 21534512 intergenic not near genes chrX_5_13135001 chrX_13135001 RAL-890 1841 chrX 4763250 4763278 chrX 4763738 4763765 Stalker4 8 487 2.5 2.5 2.5 2.3 515 chrX 4763250 intergenic not near genes chrX 4763508 intergenic not near genes chrX 4763765 intergenic not near genes chrX_8_4760001 chrX_4760001 RAL-890 1842 chrX 4792385 4792407 chrX 4792818 4792838 jockey 7 432 4.5 4.5 4.5 1.3 453 chrX 4792385 intergenic not near genes chrX 4792612 intergenic not near genes chrX 4792838 intergenic not near genes chrX_7_4790001 chrX_4790001 RAL-890 1843 chrX 4827973 4827996 chrX 4835344 4835366 Stalker4 9 7367 2.0 1.5 1.8 3.2 7393 chrX 4827973 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835366 intergenic not near genes chrX_9_4830001 chrX_4830001 RAL-890 1844 chrX 4931350 4931381 chrX 4931442 4931455 14 92 14.0 16.0 15.0 0.9 105 chrX 4931350 intron CG44774 - chrX 4931402 intron CG44774 - chrX 4931455 intron CG44774 - chrX_14_4930001 chrX_4930001 RAL-890 1845 chrX 4990042 4990069 chrX 4997256 4997283 roo 9 7214 1.5 1.0 1.2 4.1 7241 chrX 4990042 intron CR44833 - chrX 4993662 intron CR44833 - chrX 4997283 intron CR44833 - chrX_9_4990001 chrX_4990001 RAL-890 1846 chrX 5096276 5096306 chrX 5103841 5103871 springer 5 7562 0.0 2.5 1.2 2.3 7595 chrX 5096276 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103871 intron,intron CG15465 +,rg + chrX_5_5100001 chrX_5100001 RAL-890 1847 chrX 5134801 5134830 chrX 5134902 5134931 8 101 2.5 1.0 1.8 2.9 130 chrX 5134801 intron,intron CG15465 +,rg + chrX 5134866 intron,intron CG15465 +,rg + chrX 5134931 intron,intron CG15465 +,rg + chrX_8_5130001 chrX_5130001 RAL-890 1848 chrX 5272835 5272848 chrX 5272918 5272935 4 86 1.5 1.5 1.5 1.6 100 chrX 5272835 intergenic not near genes chrX 5272885 intergenic not near genes chrX 5272935 intergenic not near genes chrX_4_5270001 chrX_5270001 RAL-890 1849 chrX 5349275 5349308 chrX 5349351 5349385 8 76 2.0 4.0 3.0 2.0 110 chrX 5349275 intron SK + chrX 5349330 intron SK + chrX 5349385 intron SK + chrX_8_5345001 chrX_5345001 RAL-890 1850 chrX 5515247 5515268 chrX 5515483 5515503 8 236 2.5 4.0 3.2 1.9 256 chrX 5515247 intergenic not near genes chrX 5515375 intergenic not near genes chrX 5515503 intergenic not near genes chrX_8_5515001 chrX_5515001 RAL-890 1851 chrX 5524841 5524870 chrX 5528704 5528733 412 8 3863 4.0 1.0 2.5 2.3 3892 chrX 5524841 intergenic snoRNA:Psi28S-3342 - chrX 5526787 intergenic not near genes chrX 5528733 intergenic Vsx2 - chrX_8_5525001 chrX_5525001 RAL-890 1852 chrX 5883812 5883828 chrX 5884053 5884069 pogo 5 241 4.5 4.0 4.2 1.0 257 chrX 5883812 intron CR45668 - chrX 5883940 intron CR45668 - chrX 5884069 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-890 1853 chrX 5884163 5884190 chrX 5884404 5884431 pogo 6 241 2.5 3.5 3.0 1.5 268 chrX 5884163 intron CR45668 - chrX 5884297 intron CR45668 - chrX 5884431 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-890 1854 chrX 6171581 6171610 chrX 6179014 6179015 Quasimodo 5 7427 3.0 2.0 2.5 1.4 7434 chrX 6171581 intron Ca-alpha1T - chrX 6175298 intron Ca-alpha1T - chrX 6179015 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-890 1855 chrX 6198790 6198822 chrX 6198880 6198911 4 89 2.5 2.0 2.2 1.2 121 chrX 6198790 intergenic CG32751 -,CG43090 - chrX 6198850 intergenic CG32751 -,CG43090 - chrX 6198911 intergenic CG32751 -,CG43090 - chrX_4_6195001 chrX_6195001 RAL-890 1856 chrX 6203755 6203787 chrX 6203837 6203869 5 82 0.5 1.5 1.0 2.5 114 chrX 6203755 intergenic not near genes chrX 6203812 intergenic not near genes chrX 6203869 intergenic not near genes chrX_5_6200001 chrX_6200001 RAL-890 1857 chrX 6306555 6306570 chrX 6306632 6306647 6 77 1.5 4.0 2.8 1.6 92 chrX 6306555 3` UTR CG3823 + chrX 6306601 3` UTR CG3823 + chrX 6306647 3` UTR CG3823 + chrX_6_6305001 chrX_6305001 RAL-890 1858 chrX 6388668 6388690 chrX 6388744 6388766 9 76 2.5 3.5 3.0 2.2 98 chrX 6388668 intergenic not near genes chrX 6388717 intergenic not near genes chrX 6388766 intergenic not near genes chrX_9_6385001 chrX_6385001 RAL-890 1859 chrX 6562825 6562851 chrX 6571307 6571333 Tirant 6 8482 3.5 4.0 3.8 1.2 8508 chrX 6562825 intron CG34417 + chrX 6567079 intron CG34417 + chrX 6571333 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-890 1860 chrX 6629785 6629795 chrX 6629872 6629882 4 87 1.0 0.5 0.8 2.2 97 chrX 6629785 intron pigs + chrX 6629834 intron pigs + chrX 6629882 intron pigs + chrX_4_6625001 chrX_6625001 RAL-890 1861 chrX 6775927 6775953 chrX 6776074 6776105 8 149 5.0 1.5 3.2 1.9 178 chrX 6775927 intron shf - chrX 6776016 intron shf - chrX 6776105 intron shf - chrX_8_6775001 chrX_6775001 RAL-890 1862 chrX 6897579 6897706 chrX 6897657 6897816 10 100 2.5 2.5 2.5 2.9 237 chrX 6897579 intergenic not near genes chrX 6897698 intergenic not near genes chrX 6897816 intergenic not near genes chrX_10_6895001 chrX_6895001 RAL-890 1863 chrX 7023610 7023634 chrX 7030995 7031023 Tabor 11 7388 4.0 3.5 3.8 2.3 7413 chrX 7023610 intron CG12541 - chrX 7027316 intron CG12541 - chrX 7031023 intron CG12541 - chrX_11_7025001 chrX_7025001 RAL-890 1864 chrX 7125248 7125278 chrX 7134406 7134437 roo 7 9159 1.0 1.5 1.2 3.2 9189 chrX 7125248 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134437 intergenic not near genes chrX_7_7125001 chrX_7125001 RAL-890 1865 chrX 7322897 7322931 chrX 7322980 7323015 8 84 0.0 2.0 1.0 4.0 118 chrX 7322897 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7322956 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7323015 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX_8_7320001 chrX_7320001 RAL-890 1866 chrX 7570646 7570661 chrX 7570780 7570795 6 134 1.0 1.0 1.0 3.0 149 chrX 7570646 intergenic not near genes chrX 7570720 intergenic not near genes chrX 7570795 intergenic not near genes chrX_6_7570001 chrX_7570001 RAL-890 1867 chrX 7702906 7702930 chrX 7703345 7703369 jockey 8 439 7.0 2.5 4.8 1.4 463 chrX 7702906 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703369 intron CHES-1-like - chrX_8_7700001 chrX_7700001 RAL-890 1868 chrX 7832437 7832465 chrX 7832526 7832554 13 89 3.5 3.0 3.2 3.1 117 chrX 7832437 intron CG1402 + chrX 7832496 intron CG1402 + chrX 7832554 intron CG1402 + chrX_13_7830001 chrX_7830001 RAL-890 1869 chrX 7845725 7845756 chrX 7847215 7847247 hopper2 5 1489 2.0 2.5 2.2 1.6 1522 chrX 7845725 intergenic not near genes chrX 7846486 intergenic not near genes chrX 7847247 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-890 1870 chrX 7881867 7881875 chrX 7881949 7881957 5 82 1.5 3.0 2.2 1.6 90 chrX 7881867 intergenic Ir7f -,Ir7e - chrX 7881912 intergenic Ir7f -,Ir7e - chrX 7881957 3` UTR Ir7f - chrX_5_7880001 chrX_7880001 RAL-890 1871 chrX 8066574 8066603 chrX 8066656 8066692 4 85 0.0 0.0 0.0 4.0 118 chrX 8066574 intron mys + chrX 8066633 intron mys + chrX 8066692 intron mys + chrX_4_8065001 chrX_8065001 RAL-890 1872 chrX 8092289 8092314 chrX 8092374 8092398 6 85 1.0 0.5 0.8 3.3 109 chrX 8092289 intron Ubc-E2H - chrX 8092344 intron Ubc-E2H - chrX 8092398 intron Ubc-E2H - chrX_6_8090001 chrX_8090001 RAL-890 1873 chrX 8190449 8190480 chrX 8190562 8190581 6 110 1.0 0.0 0.5 4.0 132 chrX 8190449 intron sdt + chrX 8190515 intron sdt + chrX 8190581 intron sdt + chrX_6_8190001 chrX_8190001 RAL-890 1874 chrX 8500941 8500959 chrX 8501105 8501123 6 164 2.0 0.0 1.0 3.0 182 chrX 8500941 intron CG33181 + chrX 8501032 intron CG33181 + chrX 8501123 intron CG33181 + chrX_6_8500001 chrX_8500001 RAL-890 1875 chrX 8621993 8622011 chrX 8622082 8622101 6 90 3.5 1.0 2.2 1.9 108 chrX 8621993 intergenic not near genes chrX 8622047 intergenic not near genes chrX 8622101 intergenic not near genes chrX_6_8620001 chrX_8620001 RAL-890 1876 chrX 8708692 8708717 chrX 8708878 8708900 16 184 28.0 12.5 20.2 0.8 208 chrX 8708692 intergenic not near genes chrX 8708796 intergenic not near genes chrX 8708900 intergenic not near genes chrX_16_8705001 chrX_8705001 RAL-890 1877 chrX 8893217 8893248 chrX 8893297 8893328 10 80 1.0 4.0 2.5 2.9 111 chrX 8893217 intron Moe - chrX 8893272 intron Moe - chrX 8893328 intron Moe - chrX_10_8890001 chrX_8890001 RAL-890 1878 chrX 8948757 8948790 chrX 8956267 8956300 roo 5 7510 0.0 3.0 1.5 2.0 7543 chrX 8948757 intron rdgA + chrX 8952528 intron rdgA + chrX 8956300 intron rdgA + chrX_5_8950001 chrX_8950001 RAL-890 1879 chrX 9042010 9042017 chrX 9042119 9042126 4 109 0.0 3.5 1.8 1.4 116 chrX 9042010 intron,intron CR43836 -,CG42388 + chrX 9042068 intron,intron CR43836 -,CG42388 + chrX 9042126 intron,intron CR43836 -,CG42388 + chrX_4_9040001 chrX_9040001 RAL-890 1880 chrX 9273034 9273045 chrX 9273115 9273126 5 81 1.5 3.0 2.2 1.6 92 chrX 9273034 intergenic Cfp1 -,CG16892 + chrX 9273080 intergenic Cfp1 -,CG16892 + chrX 9273126 intergenic Cfp1 -,CG16892 + chrX_5_9270001 chrX_9270001 RAL-890 1881 chrX 9337944 9337968 chrX 9338036 9338049 5 90 0.5 3.0 1.8 1.8 105 chrX 9337944 intron CG34449 - chrX 9337996 intron CG34449 - chrX 9338049 intron CG34449 - chrX_5_9335001 chrX_9335001 RAL-890 1882 chrX 9391579 9391594 chrX 9391725 9391740 5 146 1.5 2.0 1.8 1.8 161 chrX 9391579 intron mgl - chrX 9391660 intron mgl - chrX 9391740 intron mgl - chrX_5_9390001 chrX_9390001 RAL-890 1883 chrX 9508134 9508158 chrX 9509652 9509676 jockey 5 1518 3.5 2.5 3.0 1.2 1542 chrX 9508134 intron CG32700 - chrX 9508905 intron CG32700 - chrX 9509676 intron CG32700 - chrX_5_9505001 chrX_9505001 RAL-890 1884 chrX 9543405 9543420 chrX 9543484 9543498 7 79 3.0 3.5 3.2 1.7 93 chrX 9543405 intron CG32700 - chrX 9543452 intron CG32700 - chrX 9543498 intron CG32700 - chrX_7_9540001 chrX_9540001 RAL-890 1885 chrX 9575798 9575824 chrX 9576122 9576148 mdg3 10 324 1.5 4.5 3.0 2.5 350 chrX 9575798 intron,exon CG32699 -,CG42395 - chrX 9575973 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_10_9575001 chrX_9575001 RAL-890 1886 chrX 9576437 9576465 chrX 9576528 9576556 8 91 0.5 1.0 0.8 4.4 119 chrX 9576437 intron CG32699 - chrX 9576496 intron CG32699 - chrX 9576556 intron CG32699 - chrX_8_9575001 chrX_9575001 RAL-890 1887 chrX 9632038 9632072 chrX 9632208 9632242 7 170 0.5 0.0 0.2 5.8 204 chrX 9632038 intron l(1)G0232 - chrX 9632140 intron l(1)G0232 - chrX 9632242 intron l(1)G0232 - chrX_7_9630001 chrX_9630001 RAL-890 1888 chrX 10138222 10138246 chrX 10145726 10145750 412 8 7504 4.0 2.0 3.0 2.0 7528 chrX 10138222 intron,intron RhoU +,CR44894 - chrX 10141986 intron,intron RhoU +,CR44894 - chrX 10145750 intron,intron RhoU +,CR44894 - chrX_8_10140001 chrX_10140001 RAL-890 1889 chrX 10317556 10317579 chrX 10317634 10317657 7 78 0.5 0.0 0.2 5.8 101 chrX 10317556 intron alpha-Man-I - chrX 10317606 intron alpha-Man-I - chrX 10317657 intron alpha-Man-I - chrX_7_10315001 chrX_10315001 RAL-890 1890 chrX 10348809 10348831 chrX 10356367 10356368 springer 5 7558 3.5 0.5 2.0 1.7 7559 chrX 10348809 intergenic snoRNA:U3:9B + chrX 10352588 intergenic not near genes chrX 10356368 intergenic l(1)G0289 - chrX_5_10350001 chrX_10350001 RAL-890 1891 chrX 10369117 10369127 chrX 10369283 10369294 5 167 0.5 1.5 1.0 2.5 177 chrX 10369117 intron CG17841 + chrX 10369206 intron CG17841 + chrX 10369294 intron CG17841 + chrX_5_10365001 chrX_10365001 RAL-890 1892 chrX 10487338 10487358 chrX 10487424 10487443 5 86 2.5 2.5 2.5 1.4 105 chrX 10487338 intergenic CG32687 - chrX 10487390 intergenic CG32687 - chrX 10487443 intergenic CG32687 - chrX_5_10485001 chrX_10485001 RAL-890 1893 chrX 10550332 10550360 chrX 10550410 10550438 6 78 2.0 2.0 2.0 2.0 106 chrX 10550332 intron spri - chrX 10550385 intron spri - chrX 10550438 intron spri - chrX_6_10550001 chrX_10550001 RAL-890 1894 chrX 10550856 10550871 chrX 10552323 10552338 hobo 4 1467 1.5 2.0 1.8 1.4 1482 chrX 10550856 intron spri - chrX 10551597 intron spri - chrX 10552338 intron spri - chrX_4_10550001 chrX_10550001 RAL-890 1895 chrX 10686052 10686078 chrX 10691189 10691215 roo 5 5137 3.0 2.0 2.5 1.4 5163 chrX 10686052 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691215 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-890 1896 chrX 10803034 10803040 chrX 10803118 10803125 5 85 4.5 6.0 5.2 0.8 91 chrX 10803034 intron Imp - chrX 10803080 intron Imp - chrX 10803125 intron Imp - chrX_5_10800001 chrX_10800001 RAL-890 1897 chrX 11026439 11026456 chrX 11026715 11026715 4 270 4.5 0.5 2.5 1.1 276 chrX 11026439 intron CG42339 - chrX 11026577 intron CG42339 - chrX 11026715 intron CG42339 - chrX_4_11025001 chrX_11025001 RAL-890 1898 chrX 11096004 11096028 chrX 11103106 11103130 HMS-Beagle 8 7102 1.5 4.5 3.0 2.0 7126 chrX 11096004 intergenic not near genes chrX 11099567 intergenic not near genes chrX 11103130 intron CG42249 + chrX_8_11095001 chrX_11095001 RAL-890 1899 chrX 11109417 11109417 chrX 12946233 12946235 7 1836817 5.5 10.5 8.0 0.8 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_7_12025001 chrX_12025001 RAL-890 1900 chrX 11254167 11254201 chrX 11254278 11254312 5 111 1.0 0.5 0.8 2.8 145 chrX 11254167 intron CG44422 - chrX 11254240 intron CG44422 - chrX 11254312 intron CG44422 - chrX_5_11250001 chrX_11250001 RAL-890 1901 chrX 11312062 11312091 chrX 11319415 11319444 Stalker2 6 7352 3.0 1.0 2.0 2.0 7382 chrX 11312062 intergenic not near genes chrX 11315753 intergenic not near genes chrX 11319444 intergenic not near genes chrX_6_11315001 chrX_11315001 RAL-890 1902 chrX 11379765 11379791 chrX 11379910 11379934 14 145 2.5 3.0 2.8 3.7 169 chrX 11379765 intron dlg1 + chrX 11379850 intron dlg1 + chrX 11379934 intron dlg1 + chrX_14_11375001 chrX_11375001 RAL-890 1903 chrX 11633416 11633447 chrX 11640470 11640501 297 8 7054 3.0 1.5 2.2 2.5 7085 chrX 11633416 intron Ptp10D + chrX 11636958 intron Ptp10D + chrX 11640501 intron Ptp10D + chrX_8_11635001 chrX_11635001 RAL-890 1904 chrX 11719875 11719902 chrX 11719955 11719982 12 80 1.0 3.5 2.2 3.8 107 chrX 11719875 3` UTR prtp + chrX 11719928 intergenic prtp +,Tango10 + chrX 11719982 intergenic prtp +,Tango10 + chrX_12_11715001 chrX_11715001 RAL-890 1905 chrX 11833942 11833966 chrX 11834027 11834051 9 84 0.0 3.5 1.8 3.2 109 chrX 11833942 intron rudhira + chrX 11833996 intron rudhira + chrX 11834051 intron rudhira + chrX_9_11830001 chrX_11830001 RAL-890 1906 chrX 11922366 11922380 chrX 11922499 11922513 5 132 1.5 2.0 1.8 1.8 147 chrX 11922366 exon Sclp - chrX 11922440 intron Sclp - chrX 11922513 intron Sclp - chrX_5_11920001 chrX_11920001 RAL-890 1907 chrX 12161490 12161496 chrX 12166256 12166261 4 4766 13.5 7.0 10.2 0.4 4771 chrX 12161490 intron Ten-a + chrX 12163876 intron Ten-a + chrX 12166261 intron Ten-a + chrX_4_12160001 chrX_12160001 RAL-890 1908 chrX 12168141 12168157 chrX 12173582 12173599 I-element 5 5441 3.0 4.0 3.5 1.1 5458 chrX 12168141 intron Ten-a + chrX 12170870 intron Ten-a + chrX 12173599 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-890 1909 chrX 12176744 12176769 chrX 12176820 12176845 5 76 0.5 4.0 2.2 1.6 101 chrX 12176744 intron,3` UTR Ten-a +,CG1924 - chrX 12176794 intron,3` UTR Ten-a +,CG1924 - chrX 12176845 intron,3` UTR Ten-a +,CG1924 - chrX_5_12175001 chrX_12175001 RAL-890 1910 chrX 12272845 12272853 chrX 12272924 12272932 4 79 3.5 2.0 2.8 1.1 87 chrX 12272845 intron Ten-a + chrX 12272888 intron Ten-a + chrX 12272932 intron Ten-a + chrX_4_12270001 chrX_12270001 RAL-890 1911 chrX 12301958 12301990 chrX 12303264 12303296 X-element 9 1304 0.5 2.0 1.2 4.1 1338 chrX 12301958 intron Ten-a + chrX 12302627 intron Ten-a + chrX 12303296 intron Ten-a + chrX_9_12300001 chrX_12300001 RAL-890 1912 chrX 12428352 12428373 chrX 12428463 12428484 6 112 5.0 2.0 3.5 1.3 132 chrX 12428352 intergenic not near genes chrX 12428418 intergenic not near genes chrX 12428484 intergenic not near genes chrX_6_12425001 chrX_12425001 RAL-890 1913 chrX 12465475 12465489 chrX 12465551 12465563 4 76 0.5 0.5 0.5 2.7 88 chrX 12465475 exon CG42258 + chrX 12465519 intron CG42258 + chrX 12465563 intron CG42258 + chrX_4_12465001 chrX_12465001 RAL-890 1914 chrX 12511326 12511351 chrX 12511410 12511435 7 84 0.0 2.5 1.2 3.2 109 chrX 12511326 intron CG2556 + chrX 12511380 intron CG2556 + chrX 12511435 intron CG2556 + chrX_7_12510001 chrX_12510001 RAL-890 1915 chrX 12528878 12528887 chrX 12528954 12528963 4 76 1.0 0.5 0.8 2.2 85 chrX 12528878 intron CG43921 - chrX 12528920 intron CG43921 - chrX 12528963 intron CG43921 - chrX_4_12525001 chrX_12525001 RAL-890 1916 chrX 12532644 12532651 chrX 12532790 12532796 5 146 4.5 0.5 2.5 1.4 152 chrX 12532644 intron CG43921 - chrX 12532720 intron CG43921 - chrX 12532796 intron CG43921 - chrX_5_12530001 chrX_12530001 RAL-890 1917 chrX 12843574 12843587 chrX 12843652 12843665 5 78 3.5 3.0 3.2 1.2 91 chrX 12843574 intron Pde9 - chrX 12843620 intron Pde9 - chrX 12843665 intron Pde9 - chrX_5_12840001 chrX_12840001 RAL-890 1918 chrX 12862278 12862305 chrX 12862398 12862425 7 120 1.5 2.5 2.0 2.3 147 chrX 12862278 intron Pde9 - chrX 12862352 intron Pde9 - chrX 12862425 intron Pde9 - chrX_7_12860001 chrX_12860001 RAL-890 1919 chrX 13146597 13146631 chrX 13146685 13146719 6 88 2.0 3.0 2.5 1.7 122 chrX 13146597 intron CG32645 + chrX 13146658 intron CG32645 + chrX 13146719 intron CG32645 + chrX_6_13145001 chrX_13145001 RAL-890 1920 chrX 13147572 13147594 chrX 13147654 13147676 8 80 2.0 1.5 1.8 2.9 104 chrX 13147572 intron CG32645 + chrX 13147624 intron CG32645 + chrX 13147676 intron CG32645 + chrX_8_13145001 chrX_13145001 RAL-890 1921 chrX 13369669 13369704 chrX 13369833 13369866 7 161 2.5 3.0 2.8 1.8 197 chrX 13369669 intron dmrt11E + chrX 13369768 intron dmrt11E + chrX 13369866 intron dmrt11E + chrX_7_13365001 chrX_13365001 RAL-890 1922 chrX 13403021 13403043 chrX 13403147 13403170 X-element 6 127 2.5 1.5 2.0 2.0 149 chrX 13403021 intergenic CG12725 - chrX 13403096 intergenic CG12725 - chrX 13403170 intergenic CG12725 - chrX_6_13400001 chrX_13400001 RAL-890 1923 chrX 13429467 13429491 chrX 13430616 13430640 jockey 5 1149 3.0 6.0 4.5 0.9 1173 chrX 13429467 intergenic not near genes chrX 13430054 intergenic not near genes chrX 13430640 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-890 1924 chrX 13454294 13454312 chrX 13454435 13454461 5 151 0.0 2.5 1.2 2.3 167 chrX 13454294 intron Neto + chrX 13454378 intron Neto + chrX 13454461 intron Neto + chrX_5_13450001 chrX_13450001 RAL-890 1925 chrX 13463644 13463677 chrX 13469221 13469254 mdg3 10 5576 3.5 0.5 2.0 3.3 5610 chrX 13463644 intron Neto + chrX 13466449 intron Neto + chrX 13469254 intron Neto + chrX_10_13465001 chrX_13465001 RAL-890 1926 chrX 13788718 13788745 chrX 13789089 13789116 6 370 4.5 0.5 2.5 1.7 398 chrX 13788718 intron inaE + chrX 13788917 intron inaE + chrX 13789116 intron inaE + chrX_6_13785001 chrX_13785001 RAL-890 1927 chrX 13915439 13915455 chrX 13915571 13915587 4 132 2.0 4.0 3.0 1.0 148 chrX 13915439 intron mamo - chrX 13915513 intron mamo - chrX 13915587 intron mamo - chrX_4_13915001 chrX_13915001 RAL-890 1928 chrX 13934293 13934321 chrX 13934376 13934404 6 82 0.5 3.5 2.0 2.0 111 chrX 13934293 intron mamo - chrX 13934348 intron mamo - chrX 13934404 intron mamo - chrX_6_13930001 chrX_13930001 RAL-890 1929 chrX 13937974 13938008 chrX 13941245 13941279 I-element 9 3270 2.0 2.0 2.0 3.0 3305 chrX 13937974 intron mamo - chrX 13939626 intron mamo - chrX 13941279 intron mamo - chrX_9_13935001 chrX_13935001 RAL-890 1930 chrX 14105030 14105051 chrX 14114179 14114202 roo 6 9150 2.0 1.5 1.8 2.1 9172 chrX 14105030 intergenic not near genes chrX 14109616 intergenic not near genes chrX 14114202 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-890 1931 chrX 14157593 14157610 chrX 14163250 14163267 297 9 5657 2.0 1.5 1.8 3.2 5674 chrX 14157593 intergenic not near genes chrX 14160430 intergenic not near genes chrX 14163267 intergenic not near genes chrX_9_14160001 chrX_14160001 RAL-890 1932 chrX 14168395 14168413 chrX 14168505 14168531 5 116 0.5 1.5 1.0 2.5 136 chrX 14168395 intergenic not near genes chrX 14168463 intergenic not near genes chrX 14168531 intergenic not near genes chrX_5_14165001 chrX_14165001 RAL-890 1933 chrX 14337720 14337748 chrX 14337830 14337858 6 110 3.5 1.0 2.2 1.9 138 chrX 14337720 intron dpr8 + chrX 14337789 intron dpr8 + chrX 14337858 intron dpr8 + chrX_6_14335001 chrX_14335001 RAL-890 1934 chrX 14401549 14401558 chrX 14401658 14401667 5 109 2.0 0.0 1.0 2.5 118 chrX 14401549 intron dpr8 + chrX 14401608 intron dpr8 + chrX 14401667 intron dpr8 + chrX_5_14400001 chrX_14400001 RAL-890 1935 chrX 14416310 14416340 chrX 14421077 14421105 F-element 6 4766 2.0 4.0 3.0 1.5 4795 chrX 14416310 intron dpr8 + chrX 14418708 intron dpr8 + chrX 14421105 intron dpr8 + chrX_6_14415001 chrX_14415001 RAL-890 1936 chrX 14484969 14484995 chrX 14485058 14485084 4 89 0.0 1.0 0.5 2.7 115 chrX 14484969 intergenic not near genes chrX 14485026 intergenic not near genes chrX 14485084 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-890 1937 chrX 14500508 14500530 chrX 14500609 14500611 6 97 2.0 1.0 1.5 2.4 103 chrX 14500508 intergenic not near genes chrX 14500560 intergenic not near genes chrX 14500611 intergenic not near genes chrX_6_14500001 chrX_14500001 RAL-890 1938 chrX 14531358 14531383 chrX 14531446 14531472 4 89 2.0 0.5 1.2 1.8 114 chrX 14531358 intergenic not near genes chrX 14531415 intergenic not near genes chrX 14531472 intergenic not near genes chrX_4_14530001 chrX_14530001 RAL-890 1939 chrX 14636465 14636489 chrX 14641905 14641930 I-element 4 5441 2.5 3.0 2.8 1.1 5465 chrX 14636465 intron NetA - chrX 14639198 intron NetA - chrX 14641930 intron NetA - chrX_4_14635001 chrX_14635001 RAL-890 1940 chrX 14714042 14714063 chrX 14714124 14714145 4 82 2.5 5.5 4.0 0.8 103 chrX 14714042 intron NetB - chrX 14714094 intron NetB - chrX 14714145 intron NetB - chrX_4_14710001 chrX_14710001 RAL-890 1941 chrX 14737445 14737451 chrX 14737674 14737682 5 239 1.5 4.5 3.0 1.2 237 chrX 14737445 intron NetB - chrX 14737564 intron NetB - chrX 14737682 intron NetB - chrX_5_14735001 chrX_14735001 RAL-890 1942 chrX 14778025 14778049 chrX 14782822 14782846 Doc 5 4797 3.0 1.5 2.2 1.6 4821 chrX 14778025 intergenic CG5347 + chrX 14780436 intergenic not near genes chrX 14782846 intergenic Ag5r2 - chrX_5_14780001 chrX_14780001 RAL-890 1943 chrX 14818778 14818786 chrX 14823976 14823990 copia 4 5201 2.0 3.0 2.5 1.1 5212 chrX 14818778 intron rut - chrX 14821384 intron rut - chrX 14823990 intron rut - chrX_4_14820001 chrX_14820001 RAL-890 1944 chrX 14883597 14883623 chrX 14883673 14883699 6 76 0.5 0.5 0.5 4.0 102 chrX 14883597 intron Flo2 + chrX 14883648 intron Flo2 + chrX 14883699 intron Flo2 + chrX_6_14880001 chrX_14880001 RAL-890 1945 chrX 14888957 14888982 chrX 14889043 14889068 7 86 1.5 0.5 1.0 3.5 111 chrX 14888957 intron,intron Flo2 +,CG9514 - chrX 14889012 intron,intron Flo2 +,CG9514 - chrX 14889068 intron,intron Flo2 +,CG9514 - chrX_7_14885001 chrX_14885001 RAL-890 1946 chrX 14897817 14897855 chrX 14897901 14897939 10 84 0.0 4.0 2.0 3.3 122 chrX 14897817 intron Flo2 + chrX 14897878 intron Flo2 + chrX 14897939 intron Flo2 + chrX_10_14895001 chrX_14895001 RAL-890 1947 chrX 14936858 14936893 chrX 14946115 14946150 roo 5 9257 2.0 2.5 2.2 1.6 9292 chrX 14936858 intron pdgy - chrX 14941504 intron pdgy - chrX 14946150 intron pdgy - chrX_5_14940001 chrX_14940001 RAL-890 1948 chrX 14970671 14970688 chrX 14970749 14970766 5 78 2.0 2.0 2.0 1.7 95 chrX 14970671 intron eag + chrX 14970718 intron eag + chrX 14970766 intron eag + chrX_5_14970001 chrX_14970001 RAL-890 1949 chrX 15176662 15176692 chrX 15177208 15177238 9 545 2.0 2.5 2.2 2.8 576 chrX 15176662 intron CG43737 + chrX 15176950 intron CG43737 + chrX 15177238 intron CG43737 + chrX_9_15175001 chrX_15175001 RAL-890 1950 chrX 15248261 15248283 chrX 15248337 15248358 5 75 2.0 0.5 1.2 2.3 97 chrX 15248261 intergenic not near genes chrX 15248310 intergenic not near genes chrX 15248358 intergenic not near genes chrX_5_15245001 chrX_15245001 RAL-890 1951 chrX 15277639 15277664 chrX 15277724 15277749 7 85 4.0 1.0 2.5 2.0 110 chrX 15277639 intergenic not near genes chrX 15277694 intergenic not near genes chrX 15277749 intergenic not near genes chrX_7_15275001 chrX_15275001 RAL-890 1952 chrX 15369847 15369862 chrX 15369930 15369945 4 83 2.0 7.0 4.5 0.7 98 chrX 15369847 intron acj6 - chrX 15369896 intron acj6 - chrX 15369945 intron acj6 - chrX_4_15365001 chrX_15365001 RAL-890 1953 chrX 15413060 15413076 chrX 15417349 15417364 Juan 6 4297 2.5 2.5 2.5 1.7 4304 chrX 15413060 intron Cngl - chrX 15415212 intron Cngl - chrX 15417364 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-890 1954 chrX 15435687 15435695 chrX 15436119 15436128 rover 6 432 1.0 7.0 4.0 1.2 441 chrX 15435687 intron Cngl - chrX 15435908 intron Cngl - chrX 15436128 intron Cngl - chrX_6_15435001 chrX_15435001 RAL-890 1955 chrX 15455553 15455577 chrX 15455630 15455654 4 77 1.5 1.5 1.5 1.6 101 chrX 15455553 3` UTR shtd - chrX 15455604 3` UTR shtd - chrX 15455654 3` UTR shtd - chrX_4_15455001 chrX_15455001 RAL-890 1956 chrX 15543271 15543292 chrX 15543353 15543373 6 79 2.5 3.0 2.8 1.6 102 chrX 15543271 intron Ac13E - chrX 15543322 intron Ac13E - chrX 15543373 intron Ac13E - chrX_6_15540001 chrX_15540001 RAL-890 1957 chrX 15678049 15678057 chrX 15678118 15678134 4 75 3.0 4.5 3.8 0.8 85 chrX 15678049 intergenic CG12708 + chrX 15678092 intergenic CG12708 + chrX 15678134 intergenic CG12708 + chrX_4_15675001 chrX_15675001 RAL-890 1958 chrX 15898442 15898455 chrX 15898596 15898607 6 154 4.0 2.5 3.2 1.4 165 chrX 15898442 intron shi + chrX 15898524 intron shi + chrX 15898607 intron shi + chrX_6_15895001 chrX_15895001 RAL-890 1959 chrX 16222780 16222806 chrX 16231130 16231156 roo 6 8350 0.5 2.0 1.2 2.7 8376 chrX 16222780 intergenic not near genes chrX 16226968 intergenic not near genes chrX 16231156 intergenic not near genes chrX_6_16225001 chrX_16225001 RAL-890 1960 chrX 16295526 16295548 chrX 16295610 16295632 7 84 2.5 0.0 1.2 3.2 106 chrX 16295526 intron CG9911 - chrX 16295579 intron CG9911 - chrX 16295632 intron CG9911 - chrX_7_16295001 chrX_16295001 RAL-890 1961 chrX 16340671 16340697 chrX 16349828 16349854 roo 7 9155 3.5 6.0 4.8 1.2 9183 chrX 16340671 intergenic Dsp1 + chrX 16345262 intergenic not near genes chrX 16349854 intergenic sl + chrX_7_16345001 chrX_16345001 RAL-890 1962 chrX 16492647 16492677 chrX 16498224 16498254 mdg3 12 5577 2.5 1.5 2.0 4.0 5607 chrX 16492647 intron para - chrX 16495450 intron para - chrX 16498254 intron para - chrX_12_16495001 chrX_16495001 RAL-890 1963 chrX 16529425 16529440 chrX 16529535 16529551 4 111 0.5 4.0 2.2 1.2 126 chrX 16529425 intron para - chrX 16529488 intron para - chrX 16529551 intron para - chrX_4_16525001 chrX_16525001 RAL-890 1964 chrX 16689626 16689655 chrX 16689712 16689739 7 84 1.0 2.5 1.8 2.5 113 chrX 16689626 intron Sep4 - chrX 16689682 intron Sep4 - chrX 16689739 intron Sep4 - chrX_7_16685001 chrX_16685001 RAL-890 1965 chrX 16785278 16785306 chrX 16785382 16785410 8 104 1.0 3.5 2.2 2.5 132 chrX 16785278 3` UTR CG9609 - chrX 16785344 3` UTR CG9609 - chrX 16785410 3` UTR CG9609 - chrX_8_16785001 chrX_16785001 RAL-890 1966 chrX 16821238 16821266 chrX 16821318 16821343 5 79 2.5 2.0 2.2 1.6 105 chrX 16821238 intron CG4829 + chrX 16821290 intron CG4829 + chrX 16821343 intron CG4829 + chrX_5_16820001 chrX_16820001 RAL-890 1967 chrX 16833207 16833223 chrX 16833291 16833308 7 85 3.0 0.0 1.5 2.8 101 chrX 16833207 intron CG13004 - chrX 16833258 intron CG13004 - chrX 16833308 intron CG13004 - chrX_7_16830001 chrX_16830001 RAL-890 1968 chrX 16983076 16983076 chrX 19404963 19404965 5 2421888 3.5 3.5 3.5 1.1 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_5_18190001 chrX_18190001 RAL-890 1969 chrX 17088188 17088201 chrX 17088781 17088794 5 593 0.0 3.5 1.8 1.8 606 chrX 17088188 intergenic not near genes chrX 17088491 intergenic not near genes chrX 17088794 intergenic not near genes chrX_5_17085001 chrX_17085001 RAL-890 1970 chrX 17234263 17234285 chrX 17234354 17234382 5 91 1.5 0.0 0.8 2.8 119 chrX 17234263 intron f + chrX 17234322 intron f + chrX 17234382 intron f + chrX_5_17230001 chrX_17230001 RAL-890 1971 chrX 17536863 17536878 chrX 17536946 17536961 4 83 1.0 5.0 3.0 1.0 98 chrX 17536863 intron CG43658 - chrX 17536912 intron CG43658 - chrX 17536961 intron CG43658 - chrX_4_17535001 chrX_17535001 RAL-890 1972 chrX 17545005 17545020 chrX 17545087 17545102 4 82 5.5 3.0 4.2 0.8 97 chrX 17545005 intron CG43658 - chrX 17545054 intron CG43658 - chrX 17545102 intron CG43658 - chrX_4_17545001 chrX_17545001 RAL-890 1973 chrX 17766367 17766372 chrX 17766461 17766470 5 97 3.5 2.0 2.8 1.3 103 chrX 17766367 intergenic not near genes chrX 17766418 intergenic not near genes chrX 17766470 intergenic not near genes chrX_5_17765001 chrX_17765001 RAL-890 1974 chrX 17968892 17968924 chrX 17969010 17969042 7 118 1.5 1.5 1.5 2.8 150 chrX 17968892 intron Sh - chrX 17968967 intron Sh - chrX 17969042 intron Sh - chrX_7_17965001 chrX_17965001 RAL-890 1975 chrX 18040430 18040452 chrX 18040518 18040538 5 88 1.5 1.5 1.5 2.0 108 chrX 18040430 intron Sh - chrX 18040484 intron Sh - chrX 18040538 intron Sh - chrX_5_18040001 chrX_18040001 RAL-890 1976 chrX 18093668 18093689 chrX 18093867 18093894 9 201 2.5 4.5 3.5 2.0 226 chrX 18093668 5` UTR RhoGAP16F + chrX 18093781 5` UTR RhoGAP16F + chrX 18093894 5` UTR RhoGAP16F + chrX_9_18090001 chrX_18090001 RAL-890 1977 chrX 18122817 18122853 chrX 18122893 18122929 8 76 3.0 1.5 2.2 2.5 112 chrX 18122817 5` UTR CR45606 + chrX 18122873 5` UTR CR45606 + chrX 18122929 intergenic CR45606 + chrX_8_18120001 chrX_18120001 RAL-890 1978 chrX 18166470 18166493 chrX 18167078 18167101 8 605 0.0 1.5 0.8 4.4 631 chrX 18166470 intron Frq1 + chrX 18166786 intron Frq1 + chrX 18167101 intron Frq1 + chrX_8_18165001 chrX_18165001 RAL-890 1979 chrX 18194066 18194103 chrX 18194601 18194638 BS 16 534 3.5 2.5 3.0 4.0 572 chrX 18194066 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194638 intron Frq2 + chrX_16_18190001 chrX_18190001 RAL-890 1980 chrX 18337427 18337453 chrX 18337527 18337553 7 98 4.0 1.5 2.8 1.8 126 chrX 18337427 intron CG6123 - chrX 18337490 intron CG6123 - chrX 18337553 intron CG6123 - chrX_7_18335001 chrX_18335001 RAL-890 1981 chrX 18429495 18429526 chrX 18434806 18434837 Transpac 9 5311 2.5 3.0 2.8 2.4 5342 chrX 18429495 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434837 intergenic not near genes chrX_9_18430001 chrX_18430001 RAL-890 1982 chrX 18467225 18467256 chrX 18467389 18467420 11 164 2.5 2.0 2.2 3.4 195 chrX 18467225 intron CG32547 - chrX 18467322 intron CG32547 - chrX 18467420 intron CG32547 - chrX_11_18465001 chrX_18465001 RAL-890 1983 chrX 18486115 18486140 chrX 18486203 18486229 7 83 3.5 5.5 4.5 1.3 114 chrX 18486115 exon psh - chrX 18486172 intron psh - chrX 18486229 intron psh - chrX_7_18485001 chrX_18485001 RAL-890 1984 chrX 18645013 18645045 chrX 18645111 18645143 8 98 3.5 2.0 2.8 2.1 130 chrX 18645013 intron Rip11 - chrX 18645078 intron Rip11 - chrX 18645143 intron Rip11 - chrX_8_18645001 chrX_18645001 RAL-890 1985 chrX 18749621 18749646 chrX 18749703 18749730 9 81 1.5 4.0 2.8 2.4 109 chrX 18749621 intergenic not near genes chrX 18749676 intergenic not near genes chrX 18749730 intergenic not near genes chrX_9_18745001 chrX_18745001 RAL-890 1986 chrX 18833780 18833803 chrX 18833897 18833920 7 117 3.0 2.5 2.8 1.8 140 chrX 18833780 intron Pvf1 + chrX 18833850 intron Pvf1 + chrX 18833920 intron Pvf1 + chrX_7_18830001 chrX_18830001 RAL-890 1987 chrX 18881853 18881876 chrX 18881940 18881963 11 87 0.0 1.5 0.8 6.1 110 chrX 18881853 3` UTR CG34401 + chrX 18881908 3` UTR CG34401 + chrX 18881963 3` UTR CG34401 + chrX_11_18880001 chrX_18880001 RAL-890 1988 chrX 18921930 18921963 chrX 18922010 18922043 7 80 1.5 2.5 2.0 2.3 113 chrX 18921930 intergenic not near genes chrX 18921986 intergenic not near genes chrX 18922043 intergenic not near genes chrX_7_18920001 chrX_18920001 RAL-890 1989 chrX 19060409 19060437 chrX 19065193 19065221 Doc 13 4784 2.0 4.5 3.2 3.1 4812 chrX 19060409 intron CG14190 + chrX 19062815 intron CG14190 + chrX 19065221 intron CG14190 + chrX_13_19060001 chrX_19060001 RAL-890 1990 chrX 19080323 19080356 chrX 19080429 19080462 11 106 2.5 5.5 4.0 2.2 139 chrX 19080323 intergenic not near genes chrX 19080392 intergenic not near genes chrX 19080462 intergenic not near genes chrX_11_19080001 chrX_19080001 RAL-890 1991 chrX 19124439 19124457 chrX 19124524 19124545 4 87 1.0 2.0 1.5 1.6 106 chrX 19124439 intergenic CG15882 - chrX 19124492 intergenic CG15882 - chrX 19124545 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-890 1992 chrX 19125696 19125716 chrX 19125825 19125844 8 128 4.0 6.0 5.0 1.3 148 chrX 19125696 intron tgy - chrX 19125770 intron tgy - chrX 19125844 intron tgy - chrX_8_19125001 chrX_19125001 RAL-890 1993 chrX 19136553 19136562 chrX 19143472 19143482 412 4 6920 4.0 2.5 3.2 1.0 6929 chrX 19136553 intergenic not near genes chrX 19140018 intergenic not near genes chrX 19143482 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-890 1994 chrX 13057298 13057300 chrX 19242812 19242814 29 6185514 10.0 15.5 12.8 2.1 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_29_16150001 chrX_16150001 RAL-890 1995 chrX 19352465 19352488 chrX 19370475 19370498 9 18010 15.5 1.5 8.5 0.9 18033 chrX 19352465 intergenic not near genes chrX 19361482 intron kek5 + chrX 19370498 intron kek5 + chrX_9_19360001 chrX_19360001 RAL-890 1996 chrX 19380158 19380187 chrX 19380399 19380427 pogo 9 240 1.5 2.0 1.8 3.2 269 chrX 19380158 intron kek5 + chrX 19380292 intron kek5 + chrX 19380427 intron kek5 + chrX_9_19380001 chrX_19380001 RAL-890 1997 chrX 19472129 19472157 chrX 19472699 19472726 jockey 10 565 1.5 1.5 1.5 4.0 597 chrX 19472129 intergenic kek5 + chrX 19472428 intergenic not near genes chrX 19472726 intergenic not near genes chrX_10_19470001 chrX_19470001 RAL-890 1998 chrX 19593947 19593977 chrX 19594031 19594062 7 84 1.5 2.0 1.8 2.5 115 chrX 19593947 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594062 intron CG14205 + chrX_7_19590001 chrX_19590001 RAL-890 1999 chrX 19595733 19595744 chrX 19595822 19595833 4 89 1.0 3.5 2.2 1.2 100 chrX 19595733 intergenic CG14205 + chrX 19595783 intergenic CG14205 + chrX 19595833 intergenic CG14205 + chrX_4_19595001 chrX_19595001 RAL-890 2000 chrX 19689418 19689437 chrX 19689496 19689514 8 78 2.0 4.0 3.0 2.0 96 chrX 19689418 intergenic Mer -,CG14227 - chrX 19689466 intergenic Mer - chrX 19689514 intergenic Mer - chrX_8_19685001 chrX_19685001 RAL-890 2001 chrX 19693756 19693776 chrX 19693841 19693861 5 85 3.0 0.0 1.5 2.0 105 chrX 19693756 intergenic CG14229 -,Mer - chrX 19693808 intergenic CG14229 -,Mer - chrX 19693861 intergenic CG14229 -,Mer - chrX_5_19690001 chrX_19690001 RAL-890 2002 chrX 19710078 19710100 chrX 19711864 19711884 S-element 6 1784 2.0 5.5 3.8 1.2 1806 chrX 19710078 intron meso18E - chrX 19710981 intron meso18E - chrX 19711884 intron meso18E - chrX_6_19710001 chrX_19710001 RAL-890 2003 chrX 19769516 19769527 chrX 19769591 19769604 4 76 2.0 3.0 2.5 1.1 88 chrX 19769516 intron vfl - chrX 19769560 intron vfl - chrX 19769604 intron vfl - chrX_4_19765001 chrX_19765001 RAL-890 2004 chrX 19791259 19791289 chrX 19791353 19791383 8 94 0.0 0.5 0.2 6.7 124 chrX 19791259 intergenic not near genes chrX 19791321 intergenic not near genes chrX 19791383 intergenic not near genes chrX_8_19790001 chrX_19790001 RAL-890 2005 chrX 19881458 19881482 chrX 19881539 19881562 11 81 2.0 1.5 1.8 3.9 104 chrX 19881458 intron Hers + chrX 19881510 intron Hers + chrX 19881562 intron Hers + chrX_11_19880001 chrX_19880001 RAL-890 2006 chrX 19883767 19883794 chrX 19883852 19883878 9 83 2.5 1.5 2.0 3.0 111 chrX 19883767 intron Hers + chrX 19883822 intron Hers + chrX 19883878 intron Hers + chrX_9_19880001 chrX_19880001 RAL-890 2007 chrX 19897380 19897415 chrX 19897457 19897492 7 77 2.5 2.0 2.2 2.2 112 chrX 19897380 intron Hers + chrX 19897436 intron Hers + chrX 19897492 intron Hers + chrX_7_19895001 chrX_19895001 RAL-890 2008 chrX 19976057 19976088 chrX 19976138 19976169 9 81 2.0 1.5 1.8 3.2 112 chrX 19976057 intergenic not near genes chrX 19976113 intergenic not near genes chrX 19976169 intergenic not near genes chrX_9_19975001 chrX_19975001 RAL-890 2009 chrX 19983877 19983900 chrX 19983957 19983980 6 80 0.5 3.0 1.8 2.1 103 chrX 19983877 intergenic not near genes chrX 19983928 intergenic not near genes chrX 19983980 intergenic not near genes chrX_6_19980001 chrX_19980001 RAL-890 2010 chrX 19986933 19986951 chrX 19987268 19987286 8 335 3.0 1.0 2.0 2.7 353 chrX 19986933 intergenic not near genes chrX 19987110 intergenic not near genes chrX 19987286 intergenic not near genes chrX_8_19985001 chrX_19985001 RAL-890 2011 chrX 20052792 20052808 chrX 20052876 20052892 4 84 0.5 3.0 1.8 1.4 100 chrX 20052792 intron Dop2R - chrX 20052842 intron Dop2R - chrX 20052892 intron Dop2R - chrX_4_20050001 chrX_20050001 RAL-890 2012 chrX 20069264 20069294 chrX 20069397 20069426 12 132 1.5 0.5 1.0 6.0 162 chrX 20069264 intergenic not near genes chrX 20069345 intergenic not near genes chrX 20069426 intergenic not near genes chrX_12_20065001 chrX_20065001 RAL-890 2013 chrX 20312880 20312903 chrX 20312958 20312981 5 78 5.0 1.5 3.2 1.2 101 chrX 20312880 intron CG1504 - chrX 20312930 intron CG1504 - chrX 20312981 intron CG1504 - chrX_5_20310001 chrX_20310001 RAL-890 2014 chrX 20362873 20362884 chrX 20362950 20362951 4 74 3.0 0.0 1.5 1.6 78 chrX 20362873 intergenic not near genes chrX 20362912 intergenic not near genes chrX 20362951 intergenic not near genes chrX_4_20360001 chrX_20360001 RAL-890 2015 chrX 20447117 20447151 chrX 20447198 20447232 11 81 2.5 2.5 2.5 3.1 115 chrX 20447117 intergenic CG42578 + chrX 20447174 intergenic CG42578 + chrX 20447232 intergenic not near genes chrX_11_20445001 chrX_20445001 RAL-890 2016 chrX 20468014 20468039 chrX 20468102 20468124 7 88 1.5 0.0 0.8 3.9 110 chrX 20468014 intron GstT3 + chrX 20468069 intron GstT3 + chrX 20468124 intron GstT3 + chrX_7_20465001 chrX_20465001 RAL-890 2017 chrX 20493913 20493929 chrX 20494074 20494090 4 161 0.0 2.5 1.2 1.8 177 chrX 20493913 intron RhoGAP19D - chrX 20494002 intron RhoGAP19D - chrX 20494090 intron RhoGAP19D - chrX_4_20490001 chrX_20490001 RAL-890 2018 chrX 20528605 20528623 chrX 20528949 20528971 4 347 2.0 2.0 2.0 1.3 366 chrX 20528605 intergenic not near genes chrX 20528788 intergenic not near genes chrX 20528971 intergenic not near genes chrX_4_20525001 chrX_20525001 RAL-890 2019 chrX 20635435 20635447 chrX 20635601 20635613 4 165 0.5 3.5 2.0 1.3 178 chrX 20635435 intergenic not near genes chrX 20635524 intergenic not near genes chrX 20635613 intergenic not near genes chrX_4_20635001 chrX_20635001 RAL-890 2020 chrX 20662318 20662334 chrX 20662401 20662410 4 81 3.0 0.0 1.5 1.6 92 chrX 20662318 intron CG1835 + chrX 20662364 intron CG1835 + chrX 20662410 intron CG1835 + chrX_4_20660001 chrX_20660001 RAL-890 2021 chrX 20710412 20710439 chrX 20710489 20710516 5 77 0.0 3.5 1.8 1.8 104 chrX 20710412 intergenic not near genes chrX 20710464 intergenic not near genes chrX 20710516 intergenic not near genes chrX_5_20710001 chrX_20710001 RAL-890 2022 chrX 20836733 20836757 chrX 20844335 20844359 roo 9 7601 2.0 2.5 2.2 2.8 7626 chrX 20836733 intron shakB - chrX 20840546 intron shakB - chrX 20844359 intron shakB - chrX_9_20840001 chrX_20840001 RAL-890 2023 chrX 20915045 20915068 chrX 20915216 20915239 6 171 4.5 1.0 2.8 1.6 194 chrX 20915045 intron shakB - chrX 20915142 intron shakB - chrX 20915239 intron shakB - chrX_6_20915001 chrX_20915001 RAL-890 2024 chrX 20940718 20940747 chrX 20942187 20942211 hobo 7 1468 2.0 3.0 2.5 2.0 1493 chrX 20940718 intergenic not near genes chrX 20941464 intergenic not near genes chrX 20942211 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-890 2025 chrX 20956993 20957014 chrX 20962432 20962456 I-element 5 5441 3.5 1.5 2.5 1.4 5463 chrX 20956993 intergenic not near genes chrX 20959724 intergenic not near genes chrX 20962456 intergenic Ser6 - chrX_5_20955001 chrX_20955001 RAL-890 2026 chrX 20963460 20963486 chrX 20966253 20966280 9 2793 1.0 2.5 1.8 3.2 2820 chrX 20963460 exon Ser6 - chrX 20964870 exon CG1304 - chrX 20966280 intergenic not near genes chrX_9_20960001 chrX_20960001 RAL-890 2027 chrX 21042555 21042591 chrX 21045351 21045376 8 2786 24.5 19.0 21.8 0.4 2821 chrX 21042555 exon Mgstl + chrX 21043966 exon,3` UTR Mgstl +,CR44431 - chrX 21045376 intron Cbs + chrX_8_21040001 chrX_21040001 RAL-890 2028 chrX 21061866 21061897 chrX 21062351 21062381 roo 7 485 2.5 2.5 2.5 2.0 515 chrX 21061866 intron bves + chrX 21062124 intron bves + chrX 21062381 intron,3` UTR bves +,CG32512 - chrX_7_21060001 chrX_21060001 RAL-890 2029 chrX 21086129 21086159 chrX 21087158 21087188 jockey 9 1029 1.0 2.0 1.5 3.6 1059 chrX 21086129 intergenic not near genes chrX 21086658 intergenic not near genes chrX 21087188 intergenic not near genes chrX_9_21085001 chrX_21085001 RAL-890 2030 chrX 21088041 21088071 chrX 21088172 21088196 7 131 2.0 2.5 2.2 2.2 155 chrX 21088041 intergenic not near genes chrX 21088118 intergenic not near genes chrX 21088196 intergenic not near genes chrX_7_21085001 chrX_21085001 RAL-890 2031 chrX 21247882 21247911 chrX 21247994 21248021 5 112 1.5 2.5 2.0 1.7 139 chrX 21247882 intron CG32521 - chrX 21247952 intron CG32521 - chrX 21248021 intron CG32521 - chrX_5_21245001 chrX_21245001 RAL-890 2032 chrX 21254652 21254673 chrX 21255568 21255589 hopper2 8 916 2.0 0.0 1.0 4.0 937 chrX 21254652 intron CG32521 - chrX 21255120 intron CG32521 - chrX 21255589 intron CG32521 - chrX_8_21255001 chrX_21255001 RAL-890 2033 chrX 21308894 21308903 chrX 21308977 21308986 5 83 4.0 0.0 2.0 1.7 92 chrX 21308894 intron CG1801 - chrX 21308940 intron CG1801 - chrX 21308986 intron CG1801 - chrX_5_21305001 chrX_21305001 RAL-890 2034 chrX 21311664 21311673 chrX 21311764 21311774 5 100 2.5 1.0 1.8 1.8 110 chrX 21311664 intron CG1801 - chrX 21311719 intron CG1801 - chrX 21311774 intron CG1801 - chrX_5_21310001 chrX_21310001 RAL-890 2035 chrX 21328116 21328147 chrX 21328227 21328258 8 111 1.0 0.5 0.8 4.4 142 chrX 21328116 3` UTR CG1486 + chrX 21328187 intergenic CG1486 +,tty - chrX 21328258 intergenic CG1486 +,tty - chrX_8_21325001 chrX_21325001 RAL-890 2036 chrX 21400623 21400650 chrX 21400700 21400728 4 77 1.5 2.5 2.0 1.3 105 chrX 21400623 3` UTR CR45500 - chrX 21400676 3` UTR CR45500 - chrX 21400728 3` UTR CR45500 - chrX_4_21400001 chrX_21400001 RAL-890 2037 chrX 21419208 21419235 chrX 21419293 21419320 9 85 0.5 1.0 0.8 5.0 112 chrX 21419208 intergenic not near genes chrX 21419264 intergenic not near genes chrX 21419320 intergenic not near genes chrX_9_21415001 chrX_21415001 RAL-890 2038 chrX 21455219 21455226 chrX 21455398 21455404 4 178 4.5 0.5 2.5 1.1 185 chrX 21455219 intron CG42343 - chrX 21455312 intron CG42343 - chrX 21455404 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-890 2039 chrX 21458694 21458727 chrX 21464130 21464163 Ivk 12 5435 0.0 3.5 1.8 4.3 5469 chrX 21458694 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464163 intergenic not near genes chrX_12_21460001 chrX_21460001 RAL-890 2040 chrX 21474404 21474434 chrX 21474770 21474800 1731 5 366 2.5 2.0 2.2 1.6 396 chrX 21474404 intergenic not near genes chrX 21474602 intergenic not near genes chrX 21474800 intergenic not near genes chrX_5_21470001 chrX_21470001 RAL-890 2041 chrX 21581556 21581574 chrX 21581637 21581654 5 81 1.0 2.0 1.5 2.0 98 chrX 21581556 intergenic not near genes chrX 21581605 intergenic not near genes chrX 21581654 intergenic not near genes chrX_5_21580001 chrX_21580001 RAL-890 2042 chrX 21668261 21668288 chrX 21668346 21668373 10 84 24.0 18.5 21.2 0.5 112 chrX 21668261 intergenic not near genes chrX 21668317 intergenic not near genes chrX 21668373 intergenic not near genes chrX_10_21665001 chrX_21665001 RAL-890 2043 chrX 22259782 22259788 chrX 22382681 22382687 6 122899 50.5 12.0 31.2 0.2 122905 chrX 22259782 intergenic not near genes chrX 22321234 intergenic not near genes chrX 22382687 intergenic not near genes chrX_6_22320001 chrX_22320001 RAL-890 2044 chrX 22478883 22478892 chrX 22479016 22479025 5 133 0.0 4.0 2.0 1.7 142 chrX 22478883 intron CG12576 - chrX 22478954 intron CG12576 - chrX 22479025 intron CG12576 - chrX_5_22475001 chrX_22475001 RAL-890 2045 chrX 22564565 22564578 chrX 22575137 22575150 jockey 7 10573 13.5 6.0 9.8 0.6 10585 chrX 22564565 intergenic not near genes chrX 22569858 intergenic not near genes chrX 22575150 intergenic not near genes chrX_7_22565001 chrX_22565001 RAL-890 2046 chrX 22584342 22584351 chrX 22584433 22584442 4 91 3.0 2.0 2.5 1.1 100 chrX 22584342 intron Cda4 - chrX 22584392 intron Cda4 - chrX 22584442 intron Cda4 - chrX_4_22580001 chrX_22580001 RAL-890 2047 chrX 22585505 22585522 chrX 22585586 22585605 5 83 3.0 1.5 2.2 1.6 100 chrX 22585505 intron Cda4 - chrX 22585555 intron Cda4 - chrX 22585605 intron Cda4 - chrX_5_22585001 chrX_22585001 RAL-890 2048 chrX 22660577 22660597 chrX 22660650 22660680 10 82 6.5 2.5 4.5 1.8 103 chrX 22660577 intron CR44997 + chrX 22660628 intron CR44997 + chrX 22660680 intron CR44997 + chrX_10_22660001 chrX_22660001 RAL-890 2049 chrX 22663906 22663926 chrX 22663998 22664018 4 92 0.5 2.5 1.5 1.6 112 chrX 22663906 intron CR44997 + chrX 22663962 intron CR44997 + chrX 22664018 intron CR44997 + chrX_4_22660001 chrX_22660001 RAL-890 2050 chrX 22677298 22677324 chrX 22677507 22677523 6 207 1.0 2.0 1.5 2.4 225 chrX 22677298 intron CR44997 + chrX 22677410 intron CR44997 + chrX 22677523 intron CR44997 + chrX_6_22675001 chrX_22675001 RAL-890 2051 chrX 22692456 22692489 chrX 22692533 22692567 6 78 1.0 1.5 1.2 2.7 111 chrX 22692456 intron CR44997 + chrX 22692512 intron CR44997 + chrX 22692567 intron CR44997 + chrX_6_22690001 chrX_22690001 RAL-890 2052 chrX 22697496 22697523 chrX 22701792 22701820 Juan 11 4297 2.5 5.5 4.0 2.2 4324 chrX 22697496 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701820 intron CR44997 + chrX_11_22695001 chrX_22695001 RAL-890 2053 chrX 22764374 22764393 chrX 22764470 22764489 6 96 2.5 4.5 3.5 1.3 115 chrX 22764374 intron CR44997 + chrX 22764432 intron CR44997 + chrX 22764489 intron CR44997 + chrX_6_22760001 chrX_22760001 RAL-890 2054 chrX 22771515 22771534 chrX 22774800 22774822 297 4 3284 3.0 3.5 3.2 1.0 3307 chrX 22771515 intron CR44997 + chrX 22773168 intron CR44997 + chrX 22774822 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-890 2055 chrX 22797011 22797024 chrX 22797096 22797109 6 83 0.0 2.0 1.0 3.0 98 chrX 22797011 intron CR44997 + chrX 22797060 intron CR44997 + chrX 22797109 intron CR44997 + chrX_6_22795001 chrX_22795001 RAL-890 2056 chrX 22824245 22824450 chrX 22824370 22824583 10 130 1.5 3.5 2.5 2.9 338 chrX 22824245 intergenic fog - chrX 22824414 3` UTR fog - chrX 22824583 3` UTR fog - chrX_10_22820001 chrX_22820001 RAL-890 2057 chrX 22859292 22859327 chrX 22859801 22859836 9 508 0.5 2.0 1.2 4.1 544 chrX 22859292 intron CG42346 + chrX 22859564 intron CG42346 + chrX 22859836 intron CG42346 + chrX_9_22855001 chrX_22855001 RAL-890 2058 chrX 22867979 22868003 chrX 22868093 22868117 7 114 2.0 0.0 1.0 3.5 138 chrX 22867979 exon CG42346 + chrX 22868048 intron CG42346 + chrX 22868117 intron CG42346 + chrX_7_22865001 chrX_22865001 RAL-890 2059 chrX 22870885 22870901 chrX 22870971 22870992 4 90 0.0 3.0 1.5 1.6 107 chrX 22870885 intron,3` UTR CG42346 +,CR43656 - chrX 22870938 intron,3` UTR CG42346 +,CR43656 - chrX 22870992 intron,3` UTR CG42346 +,CR43656 - chrX_4_22870001 chrX_22870001 RAL-890 2060 chrX 22922520 22922552 chrX 22922600 22922632 9 80 2.0 2.0 2.0 3.0 112 chrX 22922520 intergenic not near genes chrX 22922576 intergenic not near genes chrX 22922632 intergenic not near genes chrX_9_22920001 chrX_22920001 RAL-890 2061 chrX 22967396 22967510 chrX 23154547 23154687 diver 4 187158 6.5 9.0 7.8 0.5 187291 chrX 22967396 intergenic not near genes chrX 23061042 intergenic not near genes chrX 23154687 intergenic not near genes chrX_4_23060001 chrX_23060001 RAL-890 2062 chrX 22987104 22987133 chrX 22989763 22989792 Burdock 11 2656 1.5 5.0 3.2 2.6 2688 chrX 22987104 intron,intron stnA -,stnB - chrX 22988448 intron,intron stnA -,stnB - chrX 22989792 intron,intron stnA -,stnB - chrX_11_22985001 chrX_22985001 RAL-890 2063 chrX 22992397 22992419 chrX 22992528 22992550 6 131 3.5 1.5 2.5 1.7 153 chrX 22992397 intron,intron stnA -,stnB - chrX 22992474 intron,intron stnA -,stnB - chrX 22992550 intron,intron stnA -,stnB - chrX_6_22990001 chrX_22990001 RAL-890 2064 chrX 22996325 22996339 chrX 23003557 23003571 roo 5 7232 2.5 7.0 4.8 0.9 7246 chrX 22996325 intron,intron stnA -,stnB - chrX 22999948 intron,intron stnA -,stnB - chrX 23003571 intron,intron stnA -,stnB - chrX_5_22995001 chrX_22995001 RAL-890 2065 chrY 975808 975826 chrY 975881 975926 8 107 76.0 93.5 84.8 0.1 118 chrY 975808 intergenic not near genes chrY 975867 intergenic not near genes chrY 975926 intergenic not near genes chrY_8_975001 chrY_975001 RAL-890 2066 chrY 1419903 1419920 chrY 1420157 1420174 5 254 9.0 8.0 8.5 0.5 271 chrY 1419903 intergenic not near genes chrY 1420038 intergenic not near genes chrY 1420174 intergenic not near genes chrY_5_1420001 chrY_1420001 RAL-890