SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47460 47486 chr2L 52565 52588 jockey 4 5104 3.5 3.5 3.5 0.9 5128 chr2L 47460 intron Cda5 - chr2L 50024 intron Cda5 - chr2L 52588 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-88 2 chr2L 79839 79860 chr2L 80183 80191 5 341 9.5 6.0 7.8 0.6 352 chr2L 79839 intergenic not near genes chr2L 80015 intergenic not near genes chr2L 80191 intergenic not near genes chr2L_5_80001 chr2L_80001 RAL-88 3 chr2L 325140 325152 chr2L 325216 325216 5 74 2.0 6.0 4.0 1.0 76 chr2L 325140 intron Plc21C + chr2L 325178 intron Plc21C + chr2L 325216 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-88 4 chr2L 347891 347918 chr2L 355387 355417 blood 4 7499 2.0 2.5 2.2 1.2 7526 chr2L 347891 3` UTR Plc21C + chr2L 351654 intron Plc21C + chr2L 355417 3` UTR Plc21C + chr2L_4_350001 chr2L_350001 RAL-88 5 chr2L 371446 371455 chr2L 371525 371534 4 79 2.0 2.0 2.0 1.3 88 chr2L 371446 intergenic not near genes chr2L 371490 intergenic not near genes chr2L 371534 intergenic not near genes chr2L_4_370001 chr2L_370001 RAL-88 6 chr2L 407950 407972 chr2L 408031 408053 4 81 1.5 1.0 1.2 1.8 103 chr2L 407950 3` UTR RpI135 + chr2L 408002 intergenic AP-2alpha -,RpI135 + chr2L 408053 3` UTR AP-2alpha - chr2L_4_405001 chr2L_405001 RAL-88 7 chr2L 668441 668460 chr2L 668521 668540 5 80 9.0 8.0 8.5 0.5 99 chr2L 668441 intron ds - chr2L 668490 intron ds - chr2L 668540 intron ds - chr2L_5_665001 chr2L_665001 RAL-88 8 chr2L 686925 686949 chr2L 695965 695988 roo 6 9040 1.5 5.5 3.5 1.3 9063 chr2L 686925 intron ds - chr2L 691456 intron ds - chr2L 695988 intron ds - chr2L_6_690001 chr2L_690001 RAL-88 9 chr2L 736878 736896 chr2L 736983 737000 4 105 3.0 1.5 2.2 1.2 122 chr2L 736878 intergenic Eaat2 - chr2L 736939 intergenic Eaat2 - chr2L 737000 intergenic Eaat2 - chr2L_4_735001 chr2L_735001 RAL-88 10 chr2L 763595 763620 chr2L 763671 763695 5 74 7.0 6.5 6.8 0.6 100 chr2L 763595 intergenic not near genes chr2L 763645 intergenic not near genes chr2L 763695 intergenic not near genes chr2L_5_760001 chr2L_760001 RAL-88 11 chr2L 764567 764591 chr2L 764646 764672 13 86 1.0 2.0 1.5 5.2 105 chr2L 764567 intergenic not near genes chr2L 764620 intergenic not near genes chr2L 764672 intergenic not near genes chr2L_13_760001 chr2L_760001 RAL-88 12 chr2L 770467 770489 chr2L 772244 772268 Bari1 5 1777 3.5 3.5 3.5 1.1 1801 chr2L 770467 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772268 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-88 13 chr2L 772446 772471 chr2L 772537 772560 8 91 9.0 7.5 8.2 0.9 114 chr2L 772446 intergenic CR44614 + chr2L 772503 intergenic CR44614 + chr2L 772560 5` UTR CR44614 + chr2L_8_770001 chr2L_770001 RAL-88 14 chr2L 774003 774018 chr2L 774221 774233 7 217 5.0 6.5 5.8 1.0 230 chr2L 774003 3` UTR CG12506 + chr2L 774118 intergenic CG12506 + chr2L 774233 intergenic CG12506 + chr2L_7_770001 chr2L_770001 RAL-88 15 chr2L 877841 877863 chr2L 877922 877943 5 81 14.0 9.0 11.5 0.4 102 chr2L 877841 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877943 3` UTR,intron CG15824 -,ninaA + chr2L_5_875001 chr2L_875001 RAL-88 16 chr2L 927861 927882 chr2L 928007 928034 4 148 6.5 4.0 5.2 0.6 173 chr2L 927861 intron CG4341 + chr2L 927948 intron CG4341 + chr2L 928034 intron CG4341 + chr2L_4_925001 chr2L_925001 RAL-88 17 chr2L 935309 935335 chr2L 935385 935411 8 76 4.5 3.5 4.0 1.6 102 chr2L 935309 intron CG4341 + chr2L 935360 intron CG4341 + chr2L 935411 intron CG4341 + chr2L_8_935001 chr2L_935001 RAL-88 18 chr2L 935963 935976 chr2L 936041 936055 5 78 7.5 6.5 7.0 0.6 92 chr2L 935963 intron CG4341 + chr2L 936009 intron CG4341 + chr2L 936055 intron CG4341 + chr2L_5_935001 chr2L_935001 RAL-88 19 chr2L 1065543 1065563 chr2L 1065635 1065655 5 88 8.0 6.5 7.2 0.6 112 chr2L 1065543 intron S - chr2L 1065599 intron S - chr2L 1065655 intron S - chr2L_5_1065001 chr2L_1065001 RAL-88 20 chr2L 1220132 1220162 chr2L 1227598 1227628 blood 11 7465 1.0 2.5 1.8 3.9 7496 chr2L 1220132 intron CG42329 + chr2L 1223880 intron CG42329 + chr2L 1227628 intron CG42329 + chr2L_11_1220001 chr2L_1220001 RAL-88 21 chr2L 1393992 1394021 chr2L 1394069 1394098 7 77 9.5 8.5 9.0 0.7 106 chr2L 1393992 intron lea - chr2L 1394045 intron lea - chr2L 1394098 intron lea - chr2L_7_1390001 chr2L_1390001 RAL-88 22 chr2L 1458249 1458262 chr2L 1458324 1458339 5 76 8.5 7.5 8.0 0.6 90 chr2L 1458249 intergenic not near genes chr2L 1458294 intergenic not near genes chr2L 1458339 intergenic not near genes chr2L_5_1455001 chr2L_1455001 RAL-88 23 chr2L 1503424 1503458 chr2L 1503502 1503536 4 77 6.5 7.0 6.8 0.5 112 chr2L 1503424 intron CR44064 + chr2L 1503480 intron CR44064 + chr2L 1503536 intron CR44064 + chr2L_4_1500001 chr2L_1500001 RAL-88 24 chr2L 1508050 1508270 chr2L 1508131 1508342 6 81 4.5 3.5 4.0 1.2 292 chr2L 1508050 intergenic not near genes chr2L 1508196 intergenic not near genes chr2L 1508342 intergenic not near genes chr2L_6_1505001 chr2L_1505001 RAL-88 25 chr2L 1512631 1512664 chr2L 1512889 1512923 5 259 2.5 7.0 4.8 0.9 292 chr2L 1512631 intergenic not near genes chr2L 1512777 intergenic not near genes chr2L 1512923 intergenic not near genes chr2L_5_1510001 chr2L_1510001 RAL-88 26 chr2L 1570687 1570723 chr2L 1573559 1573595 F-element 7 2871 2.5 3.5 3.0 1.8 2908 chr2L 1570687 intron haf + chr2L 1572141 intron haf + chr2L 1573595 intron haf + chr2L_7_1570001 chr2L_1570001 RAL-88 27 chr2L 1596657 1596682 chr2L 1596741 1596765 6 84 6.5 7.5 7.0 0.8 108 chr2L 1596657 intron,intron haf +,CG31935 - chr2L 1596711 intron,intron haf +,CG31935 - chr2L 1596765 intron,intron haf +,CG31935 - chr2L_6_1595001 chr2L_1595001 RAL-88 28 chr2L 1615409 1615415 chr2L 1615491 1615497 4 82 3.5 8.5 6.0 0.6 88 chr2L 1615409 intergenic not near genes chr2L 1615453 intergenic not near genes chr2L 1615497 intergenic not near genes chr2L_4_1615001 chr2L_1615001 RAL-88 29 chr2L 1635397 1635429 chr2L 1635533 1635563 4 136 0.0 2.5 1.2 1.8 166 chr2L 1635397 intergenic not near genes chr2L 1635480 intergenic not near genes chr2L 1635563 intergenic not near genes chr2L_4_1635001 chr2L_1635001 RAL-88 30 chr2L 1678977 1679001 chr2L 1686441 1686466 blood 5 7465 1.0 3.0 2.0 1.7 7489 chr2L 1678977 intron chinmo + chr2L 1682722 intron chinmo + chr2L 1686466 intron chinmo + chr2L_5_1680001 chr2L_1680001 RAL-88 31 chr2L 1711358 1711373 chr2L 1711682 1711692 mdg3 5 321 7.0 5.0 6.0 0.7 334 chr2L 1711358 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711525 3` UTR frtz - chr2L 1711692 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-88 32 chr2L 1721839 1721848 chr2L 1721913 1721932 4 82 2.0 2.5 2.2 1.2 93 chr2L 1721839 intron Rim2 - chr2L 1721886 intron Rim2 - chr2L 1721932 intron Rim2 - chr2L_4_1720001 chr2L_1720001 RAL-88 33 chr2L 1795471 1795479 chr2L 1795539 1795561 5 82 4.5 3.5 4.0 1.0 90 chr2L 1795471 intergenic not near genes chr2L 1795516 intergenic not near genes chr2L 1795561 intergenic not near genes chr2L_5_1795001 chr2L_1795001 RAL-88 34 chr2L 1828403 1828435 chr2L 1828486 1828519 5 84 8.5 5.5 7.0 0.6 116 chr2L 1828403 intergenic not near genes chr2L 1828461 intergenic not near genes chr2L 1828519 intergenic not near genes chr2L_5_1825001 chr2L_1825001 RAL-88 35 chr2L 1925492 1925501 chr2L 1925568 1925578 4 77 11.5 4.5 8.0 0.4 86 chr2L 1925492 intron CG7337 + chr2L 1925535 intron CG7337 + chr2L 1925578 intron CG7337 + chr2L_4_1925001 chr2L_1925001 RAL-88 36 chr2L 2007867 2007873 chr2L 2007975 2007981 4 108 2.5 4.0 3.2 1.0 114 chr2L 2007867 intergenic CR45712 + chr2L 2007924 intergenic CR45712 +,Nplp4 + chr2L 2007981 intergenic CR45712 +,Nplp4 + chr2L_4_2005001 chr2L_2005001 RAL-88 37 chr2L 2100376 2100406 chr2L 2109527 2109556 roo 8 9150 4.5 4.0 4.2 1.5 9180 chr2L 2100376 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109556 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-88 38 chr2L 2112125 2112145 chr2L 2119773 2119807 opus 5 7653 1.5 4.5 3.0 1.2 7682 chr2L 2112125 intergenic not near genes chr2L 2115966 intergenic not near genes chr2L 2119807 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-88 39 chr2L 2123743 2123767 chr2L 2123825 2123851 4 84 8.5 5.5 7.0 0.5 108 chr2L 2123743 intergenic not near genes chr2L 2123797 intergenic not near genes chr2L 2123851 intergenic not near genes chr2L_4_2120001 chr2L_2120001 RAL-88 40 chr2L 2294055 2294074 chr2L 2299244 2299249 copia 4 5187 3.5 2.5 3.0 1.0 5194 chr2L 2294055 intergenic not near genes chr2L 2296652 intergenic not near genes chr2L 2299249 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-88 41 chr2L 2311071 2311089 chr2L 2311167 2311185 4 96 3.5 3.0 3.2 1.0 114 chr2L 2311071 intron CG9967 - chr2L 2311128 intron CG9967 - chr2L 2311185 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-88 42 chr2L 2427381 2427397 chr2L 2427467 2427483 4 86 10.5 10.5 10.5 0.3 102 chr2L 2427381 3` UTR CR44912 - chr2L 2427432 3` UTR CR44912 - chr2L 2427483 3` UTR CR44912 - chr2L_4_2425001 chr2L_2425001 RAL-88 43 chr2L 2431955 2431976 chr2L 2432326 2432347 5 371 1.0 6.5 3.8 1.0 392 chr2L 2431955 intron dpp + chr2L 2432151 intron dpp + chr2L 2432347 intron dpp + chr2L_5_2430001 chr2L_2430001 RAL-88 44 chr2L 2503474 2503496 chr2L 2503628 2503646 5 150 5.5 3.0 4.2 1.0 172 chr2L 2503474 intergenic not near genes chr2L 2503560 intergenic not near genes chr2L 2503646 intergenic not near genes chr2L_5_2500001 chr2L_2500001 RAL-88 45 chr2L 2552750 2552775 chr2L 2552830 2552854 9 80 7.0 8.0 7.5 1.1 104 chr2L 2552750 exon CG3515 - chr2L 2552802 5` UTR CG3515 - chr2L 2552854 intergenic CG3515 - chr2L_9_2550001 chr2L_2550001 RAL-88 46 chr2L 2565563 2565570 chr2L 2571631 2571638 297 4 6068 0.5 2.5 1.5 1.6 6075 chr2L 2565563 exon Cyp309a2 - chr2L 2568600 intron Cyp309a2 - chr2L 2571638 intron Cyp309a2 - chr2L_4_2565001 chr2L_2565001 RAL-88 47 chr2L 2653073 2653083 chr2L 2654696 2654706 5 1624 21.0 14.0 17.5 0.3 1633 chr2L 2653073 5` UTR Prosbeta4R1 + chr2L 2653890 3` UTR Prosbeta4R1 + chr2L 2654706 exon Or23a + chr2L_5_2650001 chr2L_2650001 RAL-88 48 chr2L 2661224 2661232 chr2L 2663049 2663051 I-element 4 1830 2.0 1.5 1.8 1.4 1827 chr2L 2661224 intergenic not near genes chr2L 2662138 intergenic not near genes chr2L 2663051 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-88 49 chr2L 2667624 2667655 chr2L 2667703 2667734 6 79 5.0 6.5 5.8 0.9 110 chr2L 2667624 intergenic not near genes chr2L 2667679 intergenic not near genes chr2L 2667734 intergenic not near genes chr2L_6_2665001 chr2L_2665001 RAL-88 50 chr2L 2975640 2975663 chr2L 2978945 2978980 6 3308 16.0 18.5 17.2 0.3 3340 chr2L 2975640 exon CG9641 - chr2L 2977310 exon CG3165 + chr2L 2978980 exon CG9643 - chr2L_6_2975001 chr2L_2975001 RAL-88 51 chr2L 3073016 3073054 chr2L 3078238 3078257 copia 8 5220 1.0 3.0 2.0 2.7 5241 chr2L 3073016 intron toc - chr2L 3075636 intron toc - chr2L 3078257 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-88 52 chr2L 3171184 3171199 chr2L 3171488 3171503 4 304 4.5 5.5 5.0 0.7 319 chr2L 3171184 intergenic CG44002 - chr2L 3171344 intergenic CG44002 - chr2L 3171503 intergenic CG44002 - chr2L_4_3170001 chr2L_3170001 RAL-88 53 chr2L 3192212 3192238 chr2L 3192320 3192349 5 106 5.5 6.5 6.0 0.7 137 chr2L 3192212 exon CG34393 - chr2L 3192280 intron CG34393 - chr2L 3192349 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-88 54 chr2L 3202740 3202770 chr2L 3210169 3210199 mdg1 8 7429 1.0 0.0 0.5 5.3 7459 chr2L 3202740 intergenic not near genes chr2L 3206470 intergenic not near genes chr2L 3210199 intergenic CR45336 + chr2L_8_3205001 chr2L_3205001 RAL-88 55 chr2L 3228208 3228232 chr2L 3228286 3228310 4 76 4.0 7.5 5.8 0.6 102 chr2L 3228208 intergenic not near genes chr2L 3228259 intergenic not near genes chr2L 3228310 intergenic not near genes chr2L_4_3225001 chr2L_3225001 RAL-88 56 chr2L 3271151 3271169 chr2L 3271273 3271290 5 122 4.5 7.0 5.8 0.7 139 chr2L 3271151 exon CG3347 + chr2L 3271220 exon CG3347 + chr2L 3271290 exon CG3347 + chr2L_5_3270001 chr2L_3270001 RAL-88 57 chr2L 3284370 3284386 chr2L 3284450 3284466 4 80 7.0 6.5 6.8 0.5 96 chr2L 3284370 intergenic not near genes chr2L 3284418 intergenic not near genes chr2L 3284466 intergenic not near genes chr2L_4_3280001 chr2L_3280001 RAL-88 58 chr2L 3291239 3291262 chr2L 3291319 3291341 4 80 5.0 8.5 6.8 0.5 102 chr2L 3291239 intergenic CG9664 - chr2L 3291290 3` UTR CG9664 - chr2L 3291341 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-88 59 chr2L 3393530 3393818 chr2L 3393608 3393881 14 95 6.5 1.0 3.8 2.9 351 chr2L 3393530 intergenic not near genes chr2L 3393706 intergenic not near genes chr2L 3393881 intergenic not near genes chr2L_14_3390001 chr2L_3390001 RAL-88 60 chr2L 3582882 3582911 chr2L 3582957 3582987 5 76 5.0 6.0 5.5 0.8 105 chr2L 3582882 intergenic not near genes chr2L 3582934 intergenic not near genes chr2L 3582987 intergenic not near genes chr2L_5_3580001 chr2L_3580001 RAL-88 61 chr2L 3663312 3663327 chr2L 3663391 3663405 4 78 6.0 7.5 6.8 0.5 93 chr2L 3663312 intron CG34340 + chr2L 3663358 intron CG34340 + chr2L 3663405 intron CG34340 + chr2L_4_3660001 chr2L_3660001 RAL-88 62 chr2L 3824813 3824833 chr2L 3825040 3825056 6 228 7.0 2.5 4.8 1.0 243 chr2L 3824813 intergenic not near genes chr2L 3824934 intergenic not near genes chr2L 3825056 intergenic not near genes chr2L_6_3820001 chr2L_3820001 RAL-88 63 chr2L 3850386 3850407 chr2L 3850468 3850472 5 80 2.5 2.0 2.2 1.6 86 chr2L 3850386 intergenic not near genes chr2L 3850429 intergenic not near genes chr2L 3850472 intergenic not near genes chr2L_5_3850001 chr2L_3850001 RAL-88 64 chr2L 3999196 3999205 chr2L 3999266 3999287 4 79 7.5 4.0 5.8 0.6 91 chr2L 3999196 intergenic not near genes chr2L 3999242 intergenic not near genes chr2L 3999287 intergenic not near genes chr2L_4_3995001 chr2L_3995001 RAL-88 65 chr2L 4066040 4066060 chr2L 4068865 4068885 Juan 4 2825 2.0 2.5 2.2 1.2 2845 chr2L 4066040 intron ed + chr2L 4067462 intron ed + chr2L 4068885 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-88 66 chr2L 4150629 4150653 chr2L 4150709 4150725 6 78 0.0 3.0 1.5 2.4 96 chr2L 4150629 exon CG2955 + chr2L 4150677 exon CG2955 + chr2L 4150725 exon CG2955 + chr2L_6_4150001 chr2L_4150001 RAL-88 67 chr2L 4180129 4180132 chr2L 4180205 4180208 4 76 7.0 10.5 8.8 0.4 79 chr2L 4180129 intergenic not near genes chr2L 4180168 intergenic not near genes chr2L 4180208 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-88 68 chr2L 4181292 4181305 chr2L 4183924 4183936 Burdock 6 2631 4.5 4.5 4.5 1.1 2644 chr2L 4181292 intergenic not near genes chr2L 4182614 intergenic not near genes chr2L 4183936 intergenic not near genes chr2L_6_4180001 chr2L_4180001 RAL-88 69 chr2L 4222195 4222210 chr2L 4222282 4222296 4 87 3.0 6.0 4.5 0.7 101 chr2L 4222195 intergenic ft - chr2L 4222246 intergenic ft - chr2L 4222296 intergenic ft - chr2L_4_4220001 chr2L_4220001 RAL-88 70 chr2L 4235554 4235568 chr2L 4235631 4235646 4 78 2.5 4.5 3.5 0.9 92 chr2L 4235554 intergenic not near genes chr2L 4235600 intergenic not near genes chr2L 4235646 intergenic not near genes chr2L_4_4235001 chr2L_4235001 RAL-88 71 chr2L 4317882 4317908 chr2L 4317960 4317986 4 78 8.5 6.5 7.5 0.5 104 chr2L 4317882 intron tutl + chr2L 4317934 intron tutl + chr2L 4317986 intron tutl + chr2L_4_4315001 chr2L_4315001 RAL-88 72 chr2L 4326860 4326882 chr2L 4326945 4326970 4 87 6.5 6.5 6.5 0.5 110 chr2L 4326860 intron CG16857 + chr2L 4326915 intron CG16857 + chr2L 4326970 intron CG16857 + chr2L_4_4325001 chr2L_4325001 RAL-88 73 chr2L 4351475 4351499 chr2L 4351551 4351574 13 75 3.0 3.0 3.0 3.2 99 chr2L 4351475 intergenic CR44700 + chr2L 4351524 intergenic CR44700 + chr2L 4351574 intergenic CR44700 + chr2L_13_4350001 chr2L_4350001 RAL-88 74 chr2L 4439010 4439034 chr2L 4439096 4439120 4 86 10.0 9.5 9.8 0.4 110 chr2L 4439010 intron CG15431 - chr2L 4439065 intron CG15431 - chr2L 4439120 5` UTR CG15431 - chr2L_4_4435001 chr2L_4435001 RAL-88 75 chr2L 4477137 4477163 chr2L 4477331 4477356 8 195 15.5 12.5 14.0 0.5 219 chr2L 4477137 intergenic ine -,dp - chr2L 4477246 intergenic dp -,ine - chr2L 4477356 intergenic dp -,ine - chr2L_8_4475001 chr2L_4475001 RAL-88 76 chr2L 4487262 4487272 chr2L 4487362 4487372 4 100 5.5 5.5 5.5 0.6 110 chr2L 4487262 intron dp - chr2L 4487317 intron dp - chr2L 4487372 intron dp - chr2L_4_4485001 chr2L_4485001 RAL-88 77 chr2L 4601704 4601733 chr2L 4609145 4609174 mdg1 10 7441 1.0 3.5 2.2 3.1 7470 chr2L 4601704 intron dp - chr2L 4605439 intron dp - chr2L 4609174 intron dp - chr2L_10_4605001 chr2L_4605001 RAL-88 78 chr2L 4672081 4672107 chr2L 4672158 4672184 4 77 6.0 7.5 6.8 0.5 103 chr2L 4672081 intergenic not near genes chr2L 4672132 intergenic not near genes chr2L 4672184 intergenic not near genes chr2L_4_4670001 chr2L_4670001 RAL-88 79 chr2L 4819496 4819519 chr2L 4819619 4819640 6 121 2.0 3.0 2.5 1.7 144 chr2L 4819496 intergenic not near genes chr2L 4819568 intergenic not near genes chr2L 4819640 intergenic not near genes chr2L_6_4815001 chr2L_4815001 RAL-88 80 chr2L 4859232 4859263 chr2L 4859734 4859766 6 502 5.0 6.0 5.5 0.9 534 chr2L 4859232 intron pog + chr2L 4859499 intron pog + chr2L 4859766 intron pog + chr2L_6_4855001 chr2L_4855001 RAL-88 81 chr2L 4867715 4867909 chr2L 4867886 4867992 6 145 7.0 10.0 8.5 0.6 277 chr2L 4867715 intron pog + chr2L 4867854 intron pog + chr2L 4867992 intron pog + chr2L_6_4865001 chr2L_4865001 RAL-88 82 chr2L 5038734 5038751 chr2L 5038822 5038840 4 88 12.0 10.0 11.0 0.3 106 chr2L 5038734 exon,5` UTR CG14042 +,SP555 + chr2L 5038787 3` UTR,5` UTR CG14042 +,SP555 + chr2L 5038840 3` UTR,5` UTR CG14042 +,SP555 + chr2L_4_5035001 chr2L_5035001 RAL-88 83 chr2L 5084609 5084620 chr2L 5084888 5084898 6 279 8.0 4.5 6.2 0.8 289 chr2L 5084609 intron pgant5 - chr2L 5084754 intron pgant5 - chr2L 5084898 intron pgant5 - chr2L_6_5080001 chr2L_5080001 RAL-88 84 chr2L 5120978 5121004 chr2L 5121072 5121098 5 94 4.5 6.0 5.2 0.8 120 chr2L 5120978 intron Msp300 + chr2L 5121038 intron Msp300 + chr2L 5121098 intron Msp300 + chr2L_5_5120001 chr2L_5120001 RAL-88 85 chr2L 5210301 5210321 chr2L 5210414 5210421 5 110 5.0 6.5 5.8 0.7 120 chr2L 5210301 intergenic Cyp28d1 + chr2L 5210361 intergenic Cyp28d1 + chr2L 5210421 intergenic Cyp28d1 + chr2L_5_5210001 chr2L_5210001 RAL-88 86 chr2L 5262532 5262543 chr2L 5262609 5262619 4 76 7.0 3.0 5.0 0.7 87 chr2L 5262532 intron tkv - chr2L 5262576 intron tkv - chr2L 5262619 intron tkv - chr2L_4_5260001 chr2L_5260001 RAL-88 87 chr2L 5342778 5342797 chr2L 5345158 5345177 Doc 4 2380 0.5 2.5 1.5 1.6 2399 chr2L 5342778 intergenic not near genes chr2L 5343978 intergenic not near genes chr2L 5345177 intergenic not near genes chr2L_4_5340001 chr2L_5340001 RAL-88 88 chr2L 5516657 5516685 chr2L 5516736 5516764 6 79 0.5 0.5 0.5 4.0 107 chr2L 5516657 intergenic not near genes chr2L 5516710 intergenic not near genes chr2L 5516764 intergenic not near genes chr2L_6_5515001 chr2L_5515001 RAL-88 89 chr2L 5676891 5676923 chr2L 5676987 5677019 8 96 7.0 6.0 6.5 1.1 128 chr2L 5676891 intergenic not near genes chr2L 5676955 intergenic not near genes chr2L 5677019 intergenic not near genes chr2L_8_5675001 chr2L_5675001 RAL-88 90 chr2L 5827710 5827739 chr2L 5836718 5836747 roo 6 9008 1.5 2.0 1.8 2.1 9037 chr2L 5827710 intron TrissinR + chr2L 5832228 intron TrissinR + chr2L 5836747 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-88 91 chr2L 5839090 5839198 chr2L 5839170 5839287 7 85 9.5 4.5 7.0 0.9 197 chr2L 5839090 intron TrissinR + chr2L 5839188 intron TrissinR + chr2L 5839287 intron TrissinR + chr2L_7_5835001 chr2L_5835001 RAL-88 92 chr2L 5881742 5881751 chr2L 5881821 5881830 4 79 8.0 8.0 8.0 0.4 88 chr2L 5881742 intergenic not near genes chr2L 5881786 intergenic not near genes chr2L 5881830 intergenic not near genes chr2L_4_5880001 chr2L_5880001 RAL-88 93 chr2L 5887605 5887628 chr2L 5887686 5887709 4 81 3.0 5.0 4.0 0.8 104 chr2L 5887605 3` UTR CR44577 - chr2L 5887657 3` UTR CR44577 - chr2L 5887709 3` UTR CR44577 - chr2L_4_5885001 chr2L_5885001 RAL-88 94 chr2L 5895944 5895961 chr2L 5896032 5896050 7 89 5.5 7.0 6.2 1.0 106 chr2L 5895944 intergenic not near genes chr2L 5895997 intergenic not near genes chr2L 5896050 intergenic not near genes chr2L_7_5895001 chr2L_5895001 RAL-88 95 chr2L 5993332 5993360 chr2L 5993423 5993451 10 91 3.5 3.5 3.5 2.2 119 chr2L 5993332 exon lid - chr2L 5993392 intron lid - chr2L 5993451 intron lid - chr2L_10_5990001 chr2L_5990001 RAL-88 96 chr2L 5994933 5994942 chr2L 5995009 5995020 5 78 4.5 10.5 7.5 0.6 87 chr2L 5994933 intron lid - chr2L 5994976 intron lid - chr2L 5995020 intron lid - chr2L_5_5990001 chr2L_5990001 RAL-88 97 chr2L 6018228 6018333 chr2L 6018307 6018456 6 86 4.0 3.5 3.8 1.2 228 chr2L 6018228 intron H2.0 - chr2L 6018342 intron H2.0 - chr2L 6018456 intron H2.0 - chr2L_6_6015001 chr2L_6015001 RAL-88 98 chr2L 6028875 6028894 chr2L 6028961 6028981 5 87 4.0 5.0 4.5 0.9 106 chr2L 6028875 intron CG9109 - chr2L 6028928 intron CG9109 - chr2L 6028981 intron CG9109 - chr2L_5_6025001 chr2L_6025001 RAL-88 99 chr2L 6029346 6029357 chr2L 6029424 6029442 4 83 11.0 9.5 10.2 0.4 96 chr2L 6029346 intron CG9109 - chr2L 6029394 intron CG9109 - chr2L 6029442 intron CG9109 - chr2L_4_6025001 chr2L_6025001 RAL-88 100 chr2L 6096563 6096573 chr2L 6096661 6096669 4 97 0.0 1.0 0.5 2.7 106 chr2L 6096563 intergenic Kr-h1 +,CG45075 +,CG9175 - chr2L 6096616 intergenic CG9175 -,Kr-h1 +,CG45075 + chr2L 6096669 intergenic CG9175 -,Kr-h1 +,CG45075 + chr2L_4_6095001 chr2L_6095001 RAL-88 101 chr2L 6268959 6268977 chr2L 6269083 6269097 8 124 9.0 9.0 9.0 0.8 138 chr2L 6268959 intron Ddr + chr2L 6269028 intron Ddr + chr2L 6269097 intron Ddr + chr2L_8_6265001 chr2L_6265001 RAL-88 102 chr2L 6282054 6282070 chr2L 6282134 6282150 6 80 6.0 3.5 4.8 1.0 96 chr2L 6282054 intron Ddr + chr2L 6282102 intron Ddr + chr2L 6282150 intron Ddr + chr2L_6_6280001 chr2L_6280001 RAL-88 103 chr2L 6300569 6300595 chr2L 6300655 6300681 4 86 11.0 11.5 11.2 0.3 112 chr2L 6300569 intron Ddr + chr2L 6300625 intron Ddr + chr2L 6300681 intron Ddr + chr2L_4_6300001 chr2L_6300001 RAL-88 104 chr2L 6363151 6363175 chr2L 6366073 6366100 Burdock 5 2922 3.0 3.5 3.2 1.2 2949 chr2L 6363151 intergenic not near genes chr2L 6364626 intergenic not near genes chr2L 6366100 intergenic not near genes chr2L_5_6360001 chr2L_6360001 RAL-88 105 chr2L 6371681 6371712 chr2L 6371758 6371790 11 78 8.0 7.5 7.8 1.2 109 chr2L 6371681 intergenic not near genes chr2L 6371736 intergenic not near genes chr2L 6371790 intergenic not near genes chr2L_11_6370001 chr2L_6370001 RAL-88 106 chr2L 6399766 6399801 chr2L 6399848 6399883 7 81 7.0 7.0 7.0 0.9 117 chr2L 6399766 intron CG42368 - chr2L 6399824 intron CG42368 - chr2L 6399883 intron CG42368 - chr2L_7_6395001 chr2L_6395001 RAL-88 107 chr2L 6426863 6426888 chr2L 6445113 6445148 roo 6 18258 2.5 1.5 2.0 2.0 18285 chr2L 6426863 3` UTR CG9527 - chr2L 6436006 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-88 108 chr2L 6483954 6483972 chr2L 6484124 6484142 6 170 6.5 5.5 6.0 0.9 188 chr2L 6483954 exon DLP + chr2L 6484048 exon DLP + chr2L 6484142 exon DLP + chr2L_6_6480001 chr2L_6480001 RAL-88 109 chr2L 6514149 6514151 chr2L 6514204 6514214 5 68 4.5 4.0 4.2 1.0 65 chr2L 6514149 intron CG31637 + chr2L 6514182 intron CG31637 + chr2L 6514214 intron CG31637 + chr2L_5_6510001 chr2L_6510001 RAL-88 110 chr2L 6590530 6590553 chr2L 6590612 6590635 6 82 4.0 3.5 3.8 1.2 105 chr2L 6590530 intron CG11319 - chr2L 6590582 intron CG11319 - chr2L 6590635 intron CG11319 - chr2L_6_6590001 chr2L_6590001 RAL-88 111 chr2L 6597873 6597908 chr2L 6597963 6598026 5 112 5.5 4.0 4.8 0.9 153 chr2L 6597873 intron CG11319 - chr2L 6597950 intron CG11319 - chr2L 6598026 intron CG11319 - chr2L_5_6595001 chr2L_6595001 RAL-88 112 chr2L 6626888 6626917 chr2L 6626973 6627002 5 81 11.0 7.5 9.2 0.5 114 chr2L 6626888 intron Oatp26F - chr2L 6626945 intron Oatp26F - chr2L 6627002 intron Oatp26F - chr2L_5_6625001 chr2L_6625001 RAL-88 113 chr2L 6746099 6746116 chr2L 6746174 6746192 4 75 3.0 4.0 3.5 0.9 93 chr2L 6746099 intron CG11221 + chr2L 6746146 intron CG11221 + chr2L 6746192 intron CG11221 + chr2L_4_6745001 chr2L_6745001 RAL-88 114 chr2L 6771985 6772022 chr2L 6772072 6772108 5 85 6.5 9.0 7.8 0.6 123 chr2L 6771985 intron CG11321 - chr2L 6772046 intron CG11321 - chr2L 6772108 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-88 115 chr2L 6876781 6876809 chr2L 6882969 6882976 diver 4 6184 4.0 5.0 4.5 0.7 6195 chr2L 6876781 intron Nlg2 + chr2L 6879878 intron Nlg2 + chr2L 6882976 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-88 116 chr2L 6900742 6900764 chr2L 6900836 6900839 5 90 8.0 5.5 6.8 0.6 97 chr2L 6900742 intron Nlg2 + chr2L 6900790 intron Nlg2 + chr2L 6900839 intron Nlg2 + chr2L_5_6900001 chr2L_6900001 RAL-88 117 chr2L 7122872 7122881 chr2L 7122950 7122961 5 80 0.5 3.5 2.0 1.7 89 chr2L 7122872 intron Pvf3 - chr2L 7122916 intron Pvf3 - chr2L 7122961 intron Pvf3 - chr2L_5_7120001 chr2L_7120001 RAL-88 118 chr2L 7343323 7343359 chr2L 7350439 7350475 roo 12 7114 3.0 4.0 3.5 2.7 7152 chr2L 7343323 intron Wnt6 + chr2L 7346899 intron Wnt6 + chr2L 7350475 intron Wnt6 + chr2L_12_7345001 chr2L_7345001 RAL-88 119 chr2L 7399315 7399329 chr2L 7399688 7399702 4 372 3.5 6.0 4.8 0.7 387 chr2L 7399315 intergenic not near genes chr2L 7399508 intergenic not near genes chr2L 7399702 intergenic not near genes chr2L_4_7395001 chr2L_7395001 RAL-88 120 chr2L 7508355 7508365 chr2L 7508436 7508446 4 81 6.5 4.5 5.5 0.6 91 chr2L 7508355 intron RapGAP1 - chr2L 7508400 intron RapGAP1 - chr2L 7508446 intron RapGAP1 - chr2L_4_7505001 chr2L_7505001 RAL-88 121 chr2L 7579889 7579908 chr2L 7579971 7579990 4 82 2.5 3.0 2.8 1.1 101 chr2L 7579889 intergenic not near genes chr2L 7579940 intergenic not near genes chr2L 7579990 intergenic not near genes chr2L_4_7575001 chr2L_7575001 RAL-88 122 chr2L 7702543 7702560 chr2L 7702635 7702652 4 92 4.5 7.0 5.8 0.6 109 chr2L 7702543 intergenic Tep3 + chr2L 7702598 intergenic Tep3 + chr2L 7702652 intergenic Tep3 + chr2L_4_7700001 chr2L_7700001 RAL-88 123 chr2L 7763886 7763907 chr2L 7763974 7763997 4 85 5.5 6.5 6.0 0.6 111 chr2L 7763886 intron CG7196 + chr2L 7763942 intron CG7196 + chr2L 7763997 intron CG7196 + chr2L_4_7760001 chr2L_7760001 RAL-88 124 chr2L 7922749 7922771 chr2L 7922829 7922852 7 81 4.0 6.0 5.0 1.2 103 chr2L 7922749 intron Snoo - chr2L 7922800 intron Snoo - chr2L 7922852 intron Snoo - chr2L_7_7920001 chr2L_7920001 RAL-88 125 chr2L 7959041 7959064 chr2L 7960452 7960472 pogo 11 1411 1.0 0.0 0.5 7.3 1431 chr2L 7959041 intron Snoo - chr2L 7959756 intron Snoo - chr2L 7960472 intron Snoo - chr2L_11_7955001 chr2L_7955001 RAL-88 126 chr2L 7977091 7977108 chr2L 7984066 7984080 297 7 6974 5.0 3.5 4.2 1.3 6989 chr2L 7977091 intron Snoo - chr2L 7980586 intron Snoo - chr2L 7984080 intron,5` UTR Snoo -,CG7231 + chr2L_7_7980001 chr2L_7980001 RAL-88 127 chr2L 8013613 8013632 chr2L 8018818 8018837 copia 6 5205 3.0 0.0 1.5 2.4 5224 chr2L 8013613 intron Tg + chr2L 8016225 intron Tg + chr2L 8018837 intron Tg + chr2L_6_8015001 chr2L_8015001 RAL-88 128 chr2L 8044102 8044127 chr2L 8044181 8044206 6 78 2.0 3.5 2.8 1.6 104 chr2L 8044102 intron CG7466 + chr2L 8044154 intron CG7466 + chr2L 8044206 intron CG7466 + chr2L_6_8040001 chr2L_8040001 RAL-88 129 chr2L 8167144 8167165 chr2L 8167235 8167256 4 91 6.0 4.5 5.2 0.6 112 chr2L 8167144 intron Piezo + chr2L 8167200 intron Piezo + chr2L 8167256 intron Piezo + chr2L_4_8165001 chr2L_8165001 RAL-88 130 chr2L 8286299 8286314 chr2L 8286386 8286401 4 87 4.5 5.0 4.8 0.7 102 chr2L 8286299 intron Btk29A - chr2L 8286350 intron Btk29A - chr2L 8286401 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-88 131 chr2L 8498218 8498237 chr2L 8498294 8498318 5 80 1.5 2.0 1.8 1.8 100 chr2L 8498218 intron Dh31 - chr2L 8498268 intron Dh31 - chr2L 8498318 intron Dh31 - chr2L_5_8495001 chr2L_8495001 RAL-88 132 chr2L 8502662 8502689 chr2L 8502745 8502773 4 84 9.5 8.5 9.0 0.4 111 chr2L 8502662 intron Dh31 - chr2L 8502718 intron Dh31 - chr2L 8502773 intron Dh31 - chr2L_4_8500001 chr2L_8500001 RAL-88 133 chr2L 8552761 8552784 chr2L 8552851 8552876 4 91 6.5 10.5 8.5 0.4 115 chr2L 8552761 intron Sema-1a + chr2L 8552818 intron Sema-1a + chr2L 8552876 intron Sema-1a + chr2L_4_8550001 chr2L_8550001 RAL-88 134 chr2L 8560668 8560687 chr2L 8560759 8560778 8 90 3.5 7.5 5.5 1.2 110 chr2L 8560668 intron Sema-1a + chr2L 8560723 intron Sema-1a + chr2L 8560778 intron Sema-1a + chr2L_8_8560001 chr2L_8560001 RAL-88 135 chr2L 8723115 8723140 chr2L 8731491 8731516 Tirant 4 8376 3.5 2.0 2.8 1.1 8401 chr2L 8723115 intron raw - chr2L 8727316 intron raw - chr2L 8731516 intron raw - chr2L_4_8725001 chr2L_8725001 RAL-88 136 chr2L 8789312 8789327 chr2L 8789388 8789403 5 75 2.5 4.0 3.2 1.2 91 chr2L 8789312 intergenic not near genes chr2L 8789358 intergenic not near genes chr2L 8789403 intergenic not near genes chr2L_5_8785001 chr2L_8785001 RAL-88 137 chr2L 8789328 8789343 chr2L 8789384 8789419 5 72 2.0 3.5 2.8 1.3 91 chr2L 8789328 intergenic not near genes chr2L 8789374 intergenic not near genes chr2L 8789419 intergenic not near genes chr2L_5_8785001 chr2L_8785001 RAL-88 138 chr2L 8795002 8795023 chr2L 8795091 8795112 6 89 4.5 1.5 3.0 1.5 110 chr2L 8795002 intergenic not near genes chr2L 8795057 intergenic not near genes chr2L 8795112 intergenic not near genes chr2L_6_8795001 chr2L_8795001 RAL-88 139 chr2L 8939669 8939691 chr2L 8939749 8939771 4 80 5.5 4.0 4.8 0.7 102 chr2L 8939669 3` UTR Tsp29Fb + chr2L 8939720 3` UTR Tsp29Fb + chr2L 8939771 intergenic CG9510 -,Tsp29Fb + chr2L_4_8935001 chr2L_8935001 RAL-88 140 chr2L 9084339 9084340 chr2L 16217660 16217660 7 7133320 21.0 21.5 21.2 0.3 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-88 141 chr2L 9116616 9116623 chr2L 9116725 9116731 4 109 5.5 2.0 3.8 0.8 115 chr2L 9116616 intergenic not near genes chr2L 9116674 intergenic not near genes chr2L 9116731 intergenic not near genes chr2L_4_9115001 chr2L_9115001 RAL-88 142 chr2L 9217969 9217991 chr2L 9222756 9222778 Doc 4 4787 3.0 1.0 2.0 1.3 4809 chr2L 9217969 intron tai + chr2L 9220374 intron tai + chr2L 9222778 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-88 143 chr2L 9297382 9297404 chr2L 9297458 9297480 6 76 3.5 3.0 3.2 1.4 98 chr2L 9297382 3` UTR Ggamma30A + chr2L 9297431 3` UTR Ggamma30A + chr2L 9297480 3` UTR Ggamma30A + chr2L_6_9295001 chr2L_9295001 RAL-88 144 chr2L 9303362 9303488 chr2L 9303465 9303565 6 86 5.5 3.0 4.2 1.2 203 chr2L 9303362 intergenic not near genes chr2L 9303464 intergenic not near genes chr2L 9303565 intergenic not near genes chr2L_6_9300001 chr2L_9300001 RAL-88 145 chr2L 9380248 9380319 chr2L 9380342 9380407 4 89 4.5 4.5 4.5 0.7 159 chr2L 9380248 exon Shawl - chr2L 9380328 intron Shawl - chr2L 9380407 intron Shawl - chr2L_4_9380001 chr2L_9380001 RAL-88 146 chr2L 9393508 9393521 chr2L 9396475 9396487 jockey 4 2967 2.0 6.5 4.2 0.8 2979 chr2L 9393508 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396487 intron Shawl - chr2L_4_9390001 chr2L_9390001 RAL-88 147 chr2L 9526851 9526876 chr2L 9526943 9526967 5 92 6.0 8.5 7.2 0.6 116 chr2L 9526851 intron Oatp30B + chr2L 9526909 intron Oatp30B + chr2L 9526967 intron Oatp30B + chr2L_5_9525001 chr2L_9525001 RAL-88 148 chr2L 9686347 9686374 chr2L 9686431 9686458 6 83 6.0 3.0 4.5 1.1 111 chr2L 9686347 intron Pka-C1 - chr2L 9686402 intron Pka-C1 - chr2L 9686458 intron Pka-C1 - chr2L_6_9685001 chr2L_9685001 RAL-88 149 chr2L 9730976 9731001 chr2L 9731057 9731083 5 82 1.0 1.5 1.2 2.3 107 chr2L 9730976 intron Nckx30C - chr2L 9731030 intron Nckx30C - chr2L 9731083 intron Nckx30C - chr2L_5_9730001 chr2L_9730001 RAL-88 150 chr2L 9817222 9817242 chr2L 9817295 9817333 6 84 7.0 11.0 9.0 0.6 111 chr2L 9817222 intron nAChRalpha6 - chr2L 9817278 intron nAChRalpha6 - chr2L 9817333 intron nAChRalpha6 - chr2L_6_9815001 chr2L_9815001 RAL-88 151 chr2L 9892508 9892534 chr2L 9892584 9892610 4 76 4.0 3.5 3.8 0.8 102 chr2L 9892508 intron mtDNA-helicase - chr2L 9892559 intron mtDNA-helicase - chr2L 9892610 intron mtDNA-helicase - chr2L_4_9890001 chr2L_9890001 RAL-88 152 chr2L 9973736 9973757 chr2L 9980855 9980871 HMS-Beagle 8 7116 3.0 5.5 4.2 1.5 7135 chr2L 9973736 intergenic not near genes chr2L 9977304 intergenic not near genes chr2L 9980871 intergenic not near genes chr2L_8_9975001 chr2L_9975001 RAL-88 153 chr2L 9986353 9986384 chr2L 9986447 9986479 5 94 10.5 10.0 10.2 0.4 126 chr2L 9986353 intron bib + chr2L 9986416 intron bib + chr2L 9986479 intron bib + chr2L_5_9985001 chr2L_9985001 RAL-88 154 chr2L 10051728 10051749 chr2L 10051813 10051833 6 84 5.0 3.5 4.2 1.2 105 chr2L 10051728 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051833 5` UTR CR44874 + chr2L_6_10050001 chr2L_10050001 RAL-88 155 chr2L 10105279 10105315 chr2L 10105355 10105389 4 74 8.0 7.0 7.5 0.5 110 chr2L 10105279 intron,intron CG44153 -,CG34109 + chr2L 10105334 intron,intron CG44153 -,CG34109 + chr2L 10105389 intron,intron CG44153 -,CG34109 + chr2L_4_10105001 chr2L_10105001 RAL-88 156 chr2L 10156327 10156354 chr2L 10163794 10163824 blood 6 7467 2.5 1.5 2.0 2.0 7497 chr2L 10156327 intron,3` UTR CG44153 -,CG4839 + chr2L 10160076 intron CG44153 - chr2L 10163824 intron CG44153 - chr2L_6_10160001 chr2L_10160001 RAL-88 157 chr2L 10276200 10276219 chr2L 10276278 10276292 4 77 2.0 1.5 1.8 1.4 92 chr2L 10276200 intron Utx - chr2L 10276246 intron Utx - chr2L 10276292 intron Utx - chr2L_4_10275001 chr2L_10275001 RAL-88 158 chr2L 10490278 10490306 chr2L 10490360 10490388 4 82 11.0 9.0 10.0 0.4 110 chr2L 10490278 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490333 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490388 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_4_10490001 chr2L_10490001 RAL-88 159 chr2L 10499456 10499469 chr2L 10499512 10499536 5 72 6.0 10.5 8.2 0.5 80 chr2L 10499456 intron Myo31DF - chr2L 10499496 intron Myo31DF - chr2L 10499536 intron Myo31DF - chr2L_5_10495001 chr2L_10495001 RAL-88 160 chr2L 10563912 10563936 chr2L 10564005 10564028 5 92 6.0 6.0 6.0 0.7 116 chr2L 10563912 intron Trim9 + chr2L 10563970 intron Trim9 + chr2L 10564028 intron Trim9 + chr2L_5_10560001 chr2L_10560001 RAL-88 161 chr2L 10572707 10572732 chr2L 10572785 10572813 7 80 6.5 3.5 5.0 1.2 106 chr2L 10572707 intron Trim9 + chr2L 10572760 intron Trim9 + chr2L 10572813 intron Trim9 + chr2L_7_10570001 chr2L_10570001 RAL-88 162 chr2L 10578515 10578523 chr2L 10578596 10578604 4 80 4.0 4.0 4.0 0.8 89 chr2L 10578515 intron Trim9 + chr2L 10578560 intron Trim9 + chr2L 10578604 intron Trim9 + chr2L_4_10575001 chr2L_10575001 RAL-88 163 chr2L 10580685 10580719 chr2L 10580760 10580795 7 75 5.0 5.5 5.2 1.1 110 chr2L 10580685 intron Trim9 + chr2L 10580740 intron Trim9 + chr2L 10580795 intron Trim9 + chr2L_7_10580001 chr2L_10580001 RAL-88 164 chr2L 10592848 10592872 chr2L 10600510 10600534 opus 5 7662 1.0 2.0 1.5 2.0 7686 chr2L 10592848 intron Trim9 + chr2L 10596691 intron Trim9 + chr2L 10600534 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-88 165 chr2L 10691667 10691686 chr2L 10691749 10691768 6 82 6.0 6.0 6.0 0.9 101 chr2L 10691667 intergenic not near genes chr2L 10691718 intergenic not near genes chr2L 10691768 intergenic not near genes chr2L_6_10690001 chr2L_10690001 RAL-88 166 chr2L 10862841 10862870 chr2L 10864454 10864483 Rt1c 8 1608 2.0 2.0 2.0 2.7 1642 chr2L 10862841 3` UTR CR43807 - chr2L 10863662 intron CR43807 - chr2L 10864483 3` UTR CR43807 - chr2L_8_10860001 chr2L_10860001 RAL-88 167 chr2L 10873047 10873072 chr2L 10873127 10873151 5 80 6.5 7.0 6.8 0.6 104 chr2L 10873047 intergenic not near genes chr2L 10873099 intergenic not near genes chr2L 10873151 intergenic not near genes chr2L_5_10870001 chr2L_10870001 RAL-88 168 chr2L 10906253 10906267 chr2L 10906330 10906344 5 77 6.0 7.0 6.5 0.7 91 chr2L 10906253 intergenic CG7309 - chr2L 10906298 3` UTR CG7309 - chr2L 10906344 3` UTR CG7309 - chr2L_5_10905001 chr2L_10905001 RAL-88 169 chr2L 10912990 10913000 chr2L 10913069 10913079 4 79 2.5 4.0 3.2 1.0 89 chr2L 10912990 intergenic not near genes chr2L 10913034 intergenic not near genes chr2L 10913079 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-88 170 chr2L 10946949 10946977 chr2L 10956162 10956192 roo 13 9214 1.0 3.5 2.2 4.1 9243 chr2L 10946949 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_13_10950001 chr2L_10950001 RAL-88 171 chr2L 11253349 11253367 chr2L 11253430 11253448 4 80 6.0 9.5 7.8 0.5 99 chr2L 11253349 intron ab + chr2L 11253398 intron ab + chr2L 11253448 intron ab + chr2L_4_11250001 chr2L_11250001 RAL-88 172 chr2L 11298831 11298847 chr2L 11298908 11298924 5 77 5.5 7.5 6.5 0.7 93 chr2L 11298831 intergenic not near genes chr2L 11298878 intergenic not near genes chr2L 11298924 intergenic not near genes chr2L_5_11295001 chr2L_11295001 RAL-88 173 chr2L 11453130 11453151 chr2L 11453243 11453264 7 112 7.0 7.0 7.0 0.9 134 chr2L 11453130 intergenic not near genes chr2L 11453197 intergenic not near genes chr2L 11453264 intergenic not near genes chr2L_7_11450001 chr2L_11450001 RAL-88 174 chr2L 11540587 11540616 chr2L 11547989 11548018 Tabor 8 7402 0.5 3.0 1.8 2.9 7431 chr2L 11540587 intergenic not near genes chr2L 11544302 intergenic not near genes chr2L 11548018 intergenic not near genes chr2L_8_11540001 chr2L_11540001 RAL-88 175 chr2L 11614051 11614077 chr2L 11615546 11615570 hopper2 8 1492 3.5 2.0 2.8 2.1 1519 chr2L 11614051 intron kek2 + chr2L 11614810 intron kek2 + chr2L 11615570 intron kek2 + chr2L_8_11610001 chr2L_11610001 RAL-88 176 chr2L 11614079 11614086 chr2L 11615545 11615568 hopper2 5 1486 2.5 2.0 2.2 1.6 1489 chr2L 11614079 intron kek2 + chr2L 11614824 intron kek2 + chr2L 11615568 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-88 177 chr2L 11629583 11629595 chr2L 11629679 11629683 4 94 4.5 7.0 5.8 0.6 100 chr2L 11629583 intergenic not near genes chr2L 11629633 intergenic not near genes chr2L 11629683 intergenic not near genes chr2L_4_11625001 chr2L_11625001 RAL-88 178 chr2L 11688764 11688785 chr2L 11688841 11688862 5 76 7.5 5.0 6.2 0.7 98 chr2L 11688764 intergenic not near genes chr2L 11688813 intergenic not near genes chr2L 11688862 intergenic not near genes chr2L_5_11685001 chr2L_11685001 RAL-88 179 chr2L 11713511 11713536 chr2L 11720978 11721004 blood 10 7468 3.0 3.5 3.2 2.4 7493 chr2L 11713511 intergenic not near genes chr2L 11717258 intergenic not near genes chr2L 11721004 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-88 180 chr2L 11821462 11821475 chr2L 11821562 11821574 4 100 11.0 11.5 11.2 0.3 112 chr2L 11821462 intron Pde1c - chr2L 11821518 intron Pde1c - chr2L 11821574 intron Pde1c - chr2L_4_11820001 chr2L_11820001 RAL-88 181 chr2L 11828437 11828466 chr2L 11828513 11828542 11 76 0.0 1.5 0.8 6.1 105 chr2L 11828437 intron,intron Pde1c -,esc - chr2L 11828490 intron,intron Pde1c -,esc - chr2L 11828542 intron,intron Pde1c -,esc - chr2L_11_11825001 chr2L_11825001 RAL-88 182 chr2L 11854677 11854687 chr2L 11854843 11854852 5 166 6.0 8.5 7.2 0.6 175 chr2L 11854677 intron Pde1c - chr2L 11854764 intron Pde1c - chr2L 11854852 intron Pde1c - chr2L_5_11850001 chr2L_11850001 RAL-88 183 chr2L 11874902 11874914 chr2L 11874983 11874995 4 81 0.5 3.0 1.8 1.4 93 chr2L 11874902 intron Pde1c - chr2L 11874948 intron Pde1c - chr2L 11874995 intron Pde1c - chr2L_4_11870001 chr2L_11870001 RAL-88 184 chr2L 11925596 11925617 chr2L 11925685 11925706 4 88 8.0 12.5 10.2 0.4 110 chr2L 11925596 5` UTR Pde1c - chr2L 11925651 5` UTR Pde1c - chr2L 11925706 5` UTR Pde1c - chr2L_4_11925001 chr2L_11925001 RAL-88 185 chr2L 12067335 12067343 chr2L 12074387 12074395 297 4 7052 4.0 1.0 2.5 1.1 7060 chr2L 12067335 intergenic not near genes chr2L 12070865 intergenic not near genes chr2L 12074395 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-88 186 chr2L 12266114 12266123 chr2L 12266196 12266205 4 82 0.5 3.0 1.8 1.4 91 chr2L 12266114 intron aret + chr2L 12266160 intron aret + chr2L 12266205 intron aret + chr2L_4_12265001 chr2L_12265001 RAL-88 187 chr2L 12305411 12305438 chr2L 12305499 12305526 5 88 5.0 8.0 6.5 0.7 115 chr2L 12305411 intron aret + chr2L 12305468 intron aret + chr2L 12305526 intron aret + chr2L_5_12305001 chr2L_12305001 RAL-88 188 chr2L 12487892 12487918 chr2L 12487973 12487994 13 80 1.5 2.5 2.0 4.3 102 chr2L 12487892 intron bun - chr2L 12487943 intron bun - chr2L 12487994 intron bun - chr2L_13_12485001 chr2L_12485001 RAL-88 189 chr2L 12558319 12558330 chr2L 12565448 12565459 HMS-Beagle 4 7129 3.5 2.0 2.8 1.1 7140 chr2L 12558319 intergenic not near genes chr2L 12561889 intergenic not near genes chr2L 12565459 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-88 190 chr2L 12693849 12693873 chr2L 12693926 12693950 4 77 9.5 5.5 7.5 0.5 101 chr2L 12693849 3` UTR CG6153 + chr2L 12693900 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693950 3` UTR CG5780 - chr2L_4_12690001 chr2L_12690001 RAL-88 191 chr2L 12728576 12728593 chr2L 12728877 12728894 5 300 10.0 12.0 11.0 0.4 318 chr2L 12728576 intron MRP + chr2L 12728735 intron MRP + chr2L 12728894 intron MRP + chr2L_5_12725001 chr2L_12725001 RAL-88 192 chr2L 12728925 12728947 chr2L 12729167 12729189 pogo 8 242 1.5 5.0 3.2 1.9 264 chr2L 12728925 intron MRP + chr2L 12729057 intron MRP + chr2L 12729189 exon MRP + chr2L_8_12725001 chr2L_12725001 RAL-88 193 chr2L 12731063 12731093 chr2L 12735828 12735854 F-element 4 4765 2.5 1.5 2.0 1.3 4791 chr2L 12731063 intron MRP + chr2L 12733458 intron MRP + chr2L 12735854 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-88 194 chr2L 12739174 12739197 chr2L 12743955 12743978 Doc 4 4780 3.0 3.5 3.2 1.0 4804 chr2L 12739174 exon MRP + chr2L 12741576 intron MRP + chr2L 12743978 intron MRP + chr2L_4_12740001 chr2L_12740001 RAL-88 195 chr2L 12781803 12781813 chr2L 12789246 12789256 Quasimodo 5 7443 7.5 4.0 5.8 0.7 7453 chr2L 12781803 intergenic not near genes chr2L 12785530 intergenic not near genes chr2L 12789256 intergenic not near genes chr2L_5_12785001 chr2L_12785001 RAL-88 196 chr2L 12790299 12790330 chr2L 12790511 12790542 4 212 3.5 1.0 2.2 1.2 243 chr2L 12790299 intergenic not near genes chr2L 12790420 intergenic not near genes chr2L 12790542 intergenic not near genes chr2L_4_12790001 chr2L_12790001 RAL-88 197 chr2L 12861693 12861718 chr2L 12863160 12863182 hobo 8 1466 1.0 1.5 1.2 3.6 1489 chr2L 12861693 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863182 intergenic not near genes chr2L_8_12860001 chr2L_12860001 RAL-88 198 chr2L 12905487 12905497 chr2L 12905568 12905581 4 82 2.5 1.5 2.0 1.3 94 chr2L 12905487 intergenic not near genes chr2L 12905534 intergenic not near genes chr2L 12905581 intergenic not near genes chr2L_4_12905001 chr2L_12905001 RAL-88 199 chr2L 12912062 12912071 chr2L 12912143 12912155 4 82 10.0 11.5 10.8 0.3 93 chr2L 12912062 intergenic ACXC + chr2L 12912108 intergenic ACXC + chr2L 12912155 intergenic ACXC + chr2L_4_12910001 chr2L_12910001 RAL-88 200 chr2L 12933850 12933875 chr2L 12941317 12941320 blood 7 7464 5.0 3.5 4.2 1.3 7470 chr2L 12933850 intergenic not near genes chr2L 12937585 intergenic not near genes chr2L 12941320 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-88 201 chr2L 12955894 12955910 chr2L 12956094 12956110 4 199 7.0 11.0 9.0 0.4 216 chr2L 12955894 intergenic not near genes chr2L 12956002 intergenic not near genes chr2L 12956110 intergenic not near genes chr2L_4_12955001 chr2L_12955001 RAL-88 202 chr2L 13036241 13036255 chr2L 13036483 13036497 X-element 4 242 2.5 3.0 2.8 1.1 256 chr2L 13036241 intron CG9932 - chr2L 13036369 intron CG9932 - chr2L 13036497 intron CG9932 - chr2L_4_13035001 chr2L_13035001 RAL-88 203 chr2L 13099263 13099291 chr2L 13099400 13099429 7 136 7.5 10.0 8.8 0.7 166 chr2L 13099263 intergenic not near genes chr2L 13099346 intergenic not near genes chr2L 13099429 intergenic not near genes chr2L_7_13095001 chr2L_13095001 RAL-88 204 chr2L 13147746 13147766 chr2L 13147821 13147842 4 76 8.0 5.5 6.8 0.5 96 chr2L 13147746 intergenic not near genes chr2L 13147794 intergenic not near genes chr2L 13147842 intergenic not near genes chr2L_4_13145001 chr2L_13145001 RAL-88 205 chr2L 13152228 13152252 chr2L 13152306 13152330 5 78 5.5 1.0 3.2 1.2 102 chr2L 13152228 intergenic not near genes chr2L 13152279 intergenic not near genes chr2L 13152330 intergenic not near genes chr2L_5_13150001 chr2L_13150001 RAL-88 206 chr2L 13205801 13206044 chr2L 13205937 13206150 10 119 5.0 13.0 9.0 1.0 349 chr2L 13205801 intron Pect + chr2L 13205976 intron Pect + chr2L 13206150 intron Pect + chr2L_10_13205001 chr2L_13205001 RAL-88 207 chr2L 13231890 13231910 chr2L 13232001 13232021 5 111 1.0 2.5 1.8 1.8 131 chr2L 13231890 intergenic Prosalpha6T + chr2L 13231956 intergenic Prosalpha6T + chr2L 13232021 intergenic Prosalpha6T + chr2L_5_13230001 chr2L_13230001 RAL-88 208 chr2L 13266377 13266408 chr2L 13266465 13266496 8 88 9.5 8.5 9.0 0.8 119 chr2L 13266377 intron CG44085 + chr2L 13266436 intron CG44085 + chr2L 13266496 intron CG44085 + chr2L_8_13265001 chr2L_13265001 RAL-88 209 chr2L 13369289 13369321 chr2L 13369385 13369417 10 96 6.5 9.0 7.8 1.1 128 chr2L 13369289 5` UTR CG31855 + chr2L 13369353 5` UTR CG31855 + chr2L 13369417 exon CG31855 + chr2L_10_13365001 chr2L_13365001 RAL-88 210 chr2L 13405658 13405679 chr2L 13410455 13410476 Doc 9 4797 3.0 4.0 3.5 2.0 4818 chr2L 13405658 exon CG7110 + chr2L 13408067 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_9_13405001 chr2L_13405001 RAL-88 211 chr2L 13481458 13481474 chr2L 13482064 13482081 jockey 8 607 3.5 6.0 4.8 1.4 623 chr2L 13481458 intron CG42784 + chr2L 13481770 intron CG42784 + chr2L 13482081 intron CG42784 + chr2L_8_13480001 chr2L_13480001 RAL-88 212 chr2L 13622139 13622233 chr2L 13622238 13622337 8 94 0.5 2.0 1.2 3.6 198 chr2L 13622139 intron kuz + chr2L 13622238 intron kuz + chr2L 13622337 intron kuz + chr2L_8_13620001 chr2L_13620001 RAL-88 213 chr2L 13684281 13684289 chr2L 13684357 13684361 4 75 0.0 3.0 1.5 1.6 80 chr2L 13684281 intron CG31814 - chr2L 13684321 intron CG31814 - chr2L 13684361 intron CG31814 - chr2L_4_13680001 chr2L_13680001 RAL-88 214 chr2L 13712389 13712410 chr2L 13712482 13712503 4 93 6.0 5.0 5.5 0.6 114 chr2L 13712389 intron CG31814 - chr2L 13712446 intron CG31814 - chr2L 13712503 intron CG31814 - chr2L_4_13710001 chr2L_13710001 RAL-88 215 chr2L 13761808 13761825 chr2L 13762918 13762936 Doc 7 1111 7.0 2.0 4.5 1.3 1128 chr2L 13761808 intron TM9SF4 + chr2L 13762372 intron TM9SF4 + chr2L 13762936 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-88 216 chr2L 13853083 13853105 chr2L 13862233 13862255 roo 6 9150 2.0 1.5 1.8 2.1 9172 chr2L 13853083 intron CenG1A + chr2L 13857669 intron CenG1A + chr2L 13862255 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-88 217 chr2L 13914812 13914842 chr2L 13914892 13914922 4 80 5.5 3.5 4.5 0.7 110 chr2L 13914812 5` UTR Ance-3 + chr2L 13914867 5` UTR Ance-3 + chr2L 13914922 5` UTR Ance-3 + chr2L_4_13910001 chr2L_13910001 RAL-88 218 chr2L 14109512 14109545 chr2L 14109603 14109636 5 91 2.5 3.0 2.8 1.3 124 chr2L 14109512 intergenic CG15293 -,CG31769 - chr2L 14109574 intergenic CG31769 -,CG15293 - chr2L 14109636 3` UTR CG31769 - chr2L_5_14105001 chr2L_14105001 RAL-88 219 chr2L 14144838 14144856 chr2L 14144910 14144927 6 70 8.0 6.5 7.2 0.7 89 chr2L 14144838 intron CG17341 + chr2L 14144882 intron CG17341 + chr2L 14144927 intron CG17341 + chr2L_6_14140001 chr2L_14140001 RAL-88 220 chr2L 14268585 14268613 chr2L 14268662 14268687 5 76 4.5 3.0 3.8 1.0 102 chr2L 14268585 intron wb + chr2L 14268636 intron wb + chr2L 14268687 intron wb + chr2L_5_14265001 chr2L_14265001 RAL-88 221 chr2L 14549154 14549179 chr2L 14549229 14549255 4 75 9.0 5.0 7.0 0.5 101 chr2L 14549154 intergenic CG4218 - chr2L 14549204 intergenic CG4218 - chr2L 14549255 intergenic CG4218 - chr2L_4_14545001 chr2L_14545001 RAL-88 222 chr2L 14564216 14564227 chr2L 14564269 14564303 4 59 10.5 10.0 10.2 0.4 87 chr2L 14564216 intergenic CG3473 - chr2L 14564260 intergenic not near genes chr2L 14564303 intergenic not near genes chr2L_4_14560001 chr2L_14560001 RAL-88 223 chr2L 14588383 14588419 chr2L 14588536 14588573 10 153 3.5 2.0 2.8 2.6 190 chr2L 14588383 intergenic CG42680 - chr2L 14588478 intergenic CG42680 - chr2L 14588573 intergenic CG42680 - chr2L_10_14585001 chr2L_14585001 RAL-88 224 chr2L 14601975 14602003 chr2L 14602059 14602087 7 84 10.0 8.0 9.0 0.7 112 chr2L 14601975 exon osp - chr2L 14602031 intron osp - chr2L 14602087 intron osp - chr2L_7_14600001 chr2L_14600001 RAL-88 225 chr2L 14613281 14613293 chr2L 14613506 14613510 4 229 5.0 5.0 5.0 0.7 229 chr2L 14613281 intron,5` UTR osp -,CR43411 + chr2L 14613396 intron,5` UTR osp -,CR43411 + chr2L 14613510 intron,5` UTR osp -,CR43411 + chr2L_4_14610001 chr2L_14610001 RAL-88 226 chr2L 14778810 14778840 chr2L 14779098 14779127 8 287 0.5 5.5 3.0 2.0 317 chr2L 14778810 intergenic not near genes chr2L 14778968 intergenic not near genes chr2L 14779127 intergenic not near genes chr2L_8_14775001 chr2L_14775001 RAL-88 227 chr2L 14803879 14803907 chr2L 14809082 14809110 copia 5 5202 2.5 4.0 3.2 1.2 5231 chr2L 14803879 intergenic not near genes chr2L 14806494 intergenic not near genes chr2L 14809110 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-88 228 chr2L 14889954 14889979 chr2L 14890378 14890404 jockey 5 424 3.5 3.0 3.2 1.2 450 chr2L 14889954 intergenic not near genes chr2L 14890179 intergenic not near genes chr2L 14890404 intergenic not near genes chr2L_5_14890001 chr2L_14890001 RAL-88 229 chr2L 14905844 14905867 chr2L 14907238 14907258 4 1392 2.5 15.0 8.8 0.4 1414 chr2L 14905844 intergenic not near genes chr2L 14906551 intergenic not near genes chr2L 14907258 intergenic CG42313 - chr2L_4_14905001 chr2L_14905001 RAL-88 230 chr2L 14939652 14939677 chr2L 14939778 14939802 4 126 6.0 7.0 6.5 0.5 150 chr2L 14939652 intron CG42313 - chr2L 14939727 intron CG42313 - chr2L 14939802 intron CG42313 - chr2L_4_14935001 chr2L_14935001 RAL-88 231 chr2L 15021446 15021469 chr2L 15021522 15021545 4 76 6.0 5.0 5.5 0.6 99 chr2L 15021446 intron GABA-B-R1 + chr2L 15021496 intron GABA-B-R1 + chr2L 15021545 intron GABA-B-R1 + chr2L_4_15020001 chr2L_15020001 RAL-88 232 chr2L 15022915 15022923 chr2L 15023022 15023030 4 107 8.5 9.0 8.8 0.4 115 chr2L 15022915 intron GABA-B-R1 + chr2L 15022972 intron GABA-B-R1 + chr2L 15023030 intron GABA-B-R1 + chr2L_4_15020001 chr2L_15020001 RAL-88 233 chr2L 15077903 15078083 chr2L 15077991 15078171 4 88 1.0 5.0 3.0 1.0 268 chr2L 15077903 intron CG15270 + chr2L 15078037 intron CG15270 + chr2L 15078171 intron CG15270 + chr2L_4_15075001 chr2L_15075001 RAL-88 234 chr2L 15127768 15127797 chr2L 15127853 15127883 6 82 8.5 8.5 8.5 0.6 115 chr2L 15127768 intergenic not near genes chr2L 15127826 intergenic not near genes chr2L 15127883 intergenic not near genes chr2L_6_15125001 chr2L_15125001 RAL-88 235 chr2L 15204841 15204870 chr2L 15204983 15205012 5 142 8.0 6.5 7.2 0.6 171 chr2L 15204841 intergenic not near genes chr2L 15204926 intergenic not near genes chr2L 15205012 intergenic not near genes chr2L_5_15200001 chr2L_15200001 RAL-88 236 chr2L 15350914 15350926 chr2L 15350997 15351010 5 84 3.5 2.5 3.0 1.2 96 chr2L 15350914 intergenic not near genes chr2L 15350962 intergenic not near genes chr2L 15351010 intergenic not near genes chr2L_5_15350001 chr2L_15350001 RAL-88 237 chr2L 15446054 15446084 chr2L 15453521 15453553 blood 6 7468 1.0 0.5 0.8 3.3 7499 chr2L 15446054 intergenic not near genes chr2L 15449804 intergenic not near genes chr2L 15453553 intergenic not near genes chr2L_6_15445001 chr2L_15445001 RAL-88 238 chr2L 15500826 15500856 chr2L 15500903 15500933 7 77 0.0 1.0 0.5 4.7 107 chr2L 15500826 intron lace + chr2L 15500880 intron lace + chr2L 15500933 intron lace + chr2L_7_15500001 chr2L_15500001 RAL-88 239 chr2L 15510936 15510965 chr2L 15511030 15511059 6 93 7.0 5.5 6.2 0.8 123 chr2L 15510936 intergenic not near genes chr2L 15510998 intergenic not near genes chr2L 15511059 intergenic not near genes chr2L_6_15510001 chr2L_15510001 RAL-88 240 chr2L 15514318 15514330 chr2L 15514402 15514414 5 84 5.0 3.5 4.2 1.0 96 chr2L 15514318 intergenic not near genes chr2L 15514366 intergenic not near genes chr2L 15514414 intergenic not near genes chr2L_5_15510001 chr2L_15510001 RAL-88 241 chr2L 15535894 15535917 chr2L 15535976 15536005 4 87 8.0 7.0 7.5 0.5 111 chr2L 15535894 intergenic not near genes chr2L 15535950 intergenic not near genes chr2L 15536005 intergenic not near genes chr2L_4_15535001 chr2L_15535001 RAL-88 242 chr2L 15930915 15930928 chr2L 15931007 15931020 5 92 10.5 7.5 9.0 0.5 105 chr2L 15930915 intron beat-Ib - chr2L 15930968 intron beat-Ib - chr2L 15931020 intron beat-Ib - chr2L_5_15930001 chr2L_15930001 RAL-88 243 chr2L 15956023 15956058 chr2L 15957490 15957525 hobo 12 1466 2.0 1.0 1.5 4.8 1502 chr2L 15956023 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957525 intron beat-Ib - chr2L_12_15955001 chr2L_15955001 RAL-88 244 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 16 145889 10.5 21.5 16.0 0.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_16_16140001 chr2L_16140001 RAL-88 245 chr2L 9084336 9084340 chr2L 16217660 16217660 7 7133321 21.0 21.5 21.2 0.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_12650001 chr2L_12650001 RAL-88 246 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 8 145889 10.5 21.5 16.0 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-88 247 chr2L 16254895 16254916 chr2L 16255154 16255154 5 254 5.0 6.5 5.8 0.7 259 chr2L 16254895 intron PRL-1 - chr2L 16255024 intron PRL-1 - chr2L 16255154 intron PRL-1 - chr2L_5_16255001 chr2L_16255001 RAL-88 248 chr2L 16280256 16280282 chr2L 16281424 16281447 1360 7 1165 4.5 2.5 3.5 1.6 1191 chr2L 16280256 intron crp - chr2L 16280852 intron crp - chr2L 16281447 intron crp - chr2L_7_16280001 chr2L_16280001 RAL-88 249 chr2L 16435951 16435983 chr2L 16436033 16436064 5 82 7.0 5.5 6.2 0.7 113 chr2L 16435951 intron CG5888 - chr2L 16436008 intron CG5888 - chr2L 16436064 intron CG5888 - chr2L_5_16435001 chr2L_16435001 RAL-88 250 chr2L 16450592 16450623 chr2L 16450775 16450806 5 183 0.5 6.0 3.2 1.2 214 chr2L 16450592 intergenic Idgf2 +,Idgf3 + chr2L 16450699 intergenic Idgf2 +,Idgf3 + chr2L 16450806 intergenic Idgf3 +,Idgf2 + chr2L_5_16450001 chr2L_16450001 RAL-88 251 chr2L 16504997 16505010 chr2L 16505107 16505120 4 110 3.5 6.0 4.8 0.7 123 chr2L 16504997 intron Tpr2 + chr2L 16505058 intron Tpr2 + chr2L 16505120 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-88 252 chr2L 16563593 16563619 chr2L 16563681 16563707 4 87 2.5 2.5 2.5 1.1 114 chr2L 16563593 intron CG42389 + chr2L 16563650 intron CG42389 + chr2L 16563707 intron CG42389 + chr2L_4_16560001 chr2L_16560001 RAL-88 253 chr2L 16573646 16573659 chr2L 16573735 16573748 5 89 6.5 7.0 6.8 0.6 102 chr2L 16573646 intron CG42389 + chr2L 16573697 intron CG42389 + chr2L 16573748 intron CG42389 + chr2L_5_16570001 chr2L_16570001 RAL-88 254 chr2L 16694129 16694143 chr2L 16694215 16694229 4 84 6.5 3.0 4.8 0.7 100 chr2L 16694129 intron grp + chr2L 16694179 intron grp + chr2L 16694229 intron grp + chr2L_4_16690001 chr2L_16690001 RAL-88 255 chr2L 16873277 16873294 chr2L 16873354 16873371 4 77 5.0 5.5 5.2 0.6 94 chr2L 16873277 intron CR31781 + chr2L 16873324 intron CR31781 + chr2L 16873371 intron CR31781 + chr2L_4_16870001 chr2L_16870001 RAL-88 256 chr2L 16958102 16958136 chr2L 16962890 16962924 Doc 8 4788 1.5 2.0 1.8 2.9 4822 chr2L 16958102 intergenic not near genes chr2L 16960513 intergenic not near genes chr2L 16962924 intergenic not near genes chr2L_8_16960001 chr2L_16960001 RAL-88 257 chr2L 17000122 17000152 chr2L 17000244 17000274 7 122 6.0 10.5 8.2 0.8 152 chr2L 17000122 intergenic not near genes chr2L 17000198 intergenic not near genes chr2L 17000274 intergenic not near genes chr2L_7_17000001 chr2L_17000001 RAL-88 258 chr2L 17005418 17005436 chr2L 17005515 17005533 5 96 6.0 5.0 5.5 0.8 115 chr2L 17005418 intergenic not near genes chr2L 17005476 intergenic not near genes chr2L 17005533 intergenic not near genes chr2L_5_17005001 chr2L_17005001 RAL-88 259 chr2L 17033916 17033947 chr2L 17034001 17034032 4 85 1.5 2.5 2.0 1.3 116 chr2L 17033916 intergenic not near genes chr2L 17033974 intergenic not near genes chr2L 17034032 intergenic not near genes chr2L_4_17030001 chr2L_17030001 RAL-88 260 chr2L 17167571 17167595 chr2L 17167812 17167836 pogo 5 241 2.5 3.5 3.0 1.2 265 chr2L 17167571 intron,intron CG34106 +,beat-IIIa + chr2L 17167704 intron,intron CG34106 +,beat-IIIa + chr2L 17167836 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-88 261 chr2L 17273191 17273223 chr2L 17277973 17278006 F-element 12 4779 3.5 4.0 3.8 2.5 4815 chr2L 17273191 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278006 intergenic not near genes chr2L_12_17275001 chr2L_17275001 RAL-88 262 chr2L 17292884 17292911 chr2L 17292962 17292989 4 78 6.0 8.5 7.2 0.5 105 chr2L 17292884 intergenic not near genes chr2L 17292936 intergenic not near genes chr2L 17292989 intergenic not near genes chr2L_4_17290001 chr2L_17290001 RAL-88 263 chr2L 17387471 17387495 chr2L 17387553 17387577 5 81 4.5 5.0 4.8 0.9 106 chr2L 17387471 intron CLIP-190 + chr2L 17387524 intron CLIP-190 + chr2L 17387577 intron CLIP-190 + chr2L_5_17385001 chr2L_17385001 RAL-88 264 chr2L 17554071 17554080 chr2L 17554147 17554156 4 76 4.5 4.0 4.2 0.8 85 chr2L 17554071 intergenic CG7094 - chr2L 17554114 intergenic CG7094 - chr2L 17554156 intergenic CG7094 - chr2L_4_17550001 chr2L_17550001 RAL-88 265 chr2L 17681007 17681026 chr2L 17681082 17681102 4 76 6.5 5.0 5.8 0.6 95 chr2L 17681007 intron CadN - chr2L 17681054 intron CadN - chr2L 17681102 intron CadN - chr2L_4_17680001 chr2L_17680001 RAL-88 266 chr2L 17727870 17727879 chr2L 17729337 17729346 hobo 4 1467 0.5 3.0 1.8 1.4 1476 chr2L 17727870 intron CadN - chr2L 17728608 intron CadN - chr2L 17729346 intron CadN - chr2L_4_17725001 chr2L_17725001 RAL-88 267 chr2L 17741971 17741987 chr2L 17742047 17742062 4 75 7.0 4.5 5.8 0.6 91 chr2L 17741971 intron CadN - chr2L 17742016 intron CadN - chr2L 17742062 intron CadN - chr2L_4_17740001 chr2L_17740001 RAL-88 268 chr2L 17796027 17796045 chr2L 17796108 17796126 5 81 3.0 2.5 2.8 1.3 99 chr2L 17796027 intron CadN2 - chr2L 17796076 intron CadN2 - chr2L 17796126 intron CadN2 - chr2L_5_17795001 chr2L_17795001 RAL-88 269 chr2L 17819920 17819946 chr2L 17825123 17825148 copia 6 5203 1.5 0.5 1.0 3.0 5228 chr2L 17819920 intron CadN2 - chr2L 17822534 intron CadN2 - chr2L 17825148 intron CadN2 - chr2L_6_17820001 chr2L_17820001 RAL-88 270 chr2L 17832936 17832959 chr2L 17833014 17833037 4 77 4.0 5.0 4.5 0.7 101 chr2L 17832936 intron CadN2 - chr2L 17832986 intron CadN2 - chr2L 17833037 intron CadN2 - chr2L_4_17830001 chr2L_17830001 RAL-88 271 chr2L 17891460 17891488 chr2L 17891538 17891560 4 76 6.0 4.5 5.2 0.6 100 chr2L 17891460 intergenic not near genes chr2L 17891510 intergenic not near genes chr2L 17891560 intergenic not near genes chr2L_4_17890001 chr2L_17890001 RAL-88 272 chr2L 17911957 17911989 chr2L 17914135 17914164 pogo 4 2173 5.0 2.0 3.5 0.9 2207 chr2L 17911957 intergenic not near genes chr2L 17913060 intergenic not near genes chr2L 17914164 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-88 273 chr2L 17944416 17944437 chr2L 17944579 17944600 7 163 11.0 7.0 9.0 0.7 184 chr2L 17944416 intergenic not near genes chr2L 17944508 intergenic not near genes chr2L 17944600 intergenic not near genes chr2L_7_17940001 chr2L_17940001 RAL-88 274 chr2L 17951955 17951973 chr2L 17953422 17953440 hobo 4 1467 0.5 4.0 2.2 1.2 1485 chr2L 17951955 intergenic CR44398 -,CR44397 - chr2L 17952698 intergenic not near genes chr2L 17953440 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-88 275 chr2L 17955874 17955896 chr2L 17955966 17955988 4 92 3.5 5.0 4.2 0.8 114 chr2L 17955874 intergenic not near genes chr2L 17955931 intergenic not near genes chr2L 17955988 intergenic not near genes chr2L_4_17955001 chr2L_17955001 RAL-88 276 chr2L 18051883 18051898 chr2L 18061020 18061045 roo 4 9144 5.0 1.0 3.0 1.0 9162 chr2L 18051883 intron rdo + chr2L 18056464 intron rdo + chr2L 18061045 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-88 277 chr2L 18078280 18078307 chr2L 18078365 18078393 7 82 10.5 7.5 9.0 0.7 113 chr2L 18078280 5` UTR Arr1 + chr2L 18078336 5` UTR Arr1 + chr2L 18078393 exon Arr1 + chr2L_7_18075001 chr2L_18075001 RAL-88 278 chr2L 18079815 18079847 chr2L 18079901 18079933 4 86 2.5 4.0 3.2 1.0 118 chr2L 18079815 intron Arr1 + chr2L 18079874 intron Arr1 + chr2L 18079933 intron Arr1 + chr2L_4_18075001 chr2L_18075001 RAL-88 279 chr2L 18111243 18111272 chr2L 18111334 18111355 10 90 1.0 2.5 1.8 3.6 112 chr2L 18111243 intergenic not near genes chr2L 18111299 intergenic not near genes chr2L 18111355 intergenic not near genes chr2L_10_18110001 chr2L_18110001 RAL-88 280 chr2L 18136582 18136609 chr2L 18136670 18136696 6 88 6.0 6.5 6.2 0.8 114 chr2L 18136582 intron kel - chr2L 18136639 intron kel - chr2L 18136696 intron kel - chr2L_6_18135001 chr2L_18135001 RAL-88 281 chr2L 18143482 18143497 chr2L 18143560 18143572 4 78 9.0 8.5 8.8 0.4 90 chr2L 18143482 intron Socs36E - chr2L 18143527 intron Socs36E - chr2L 18143572 intron Socs36E - chr2L_4_18140001 chr2L_18140001 RAL-88 282 chr2L 18264062 18264096 chr2L 18264139 18264172 4 77 4.5 4.5 4.5 0.7 110 chr2L 18264062 intron CG42750 - chr2L 18264117 intron CG42750 - chr2L 18264172 intron CG42750 - chr2L_4_18260001 chr2L_18260001 RAL-88 283 chr2L 18272196 18272222 chr2L 18272360 18272386 6 164 6.0 7.0 6.5 0.8 190 chr2L 18272196 intron CG42750 - chr2L 18272291 intron CG42750 - chr2L 18272386 intron CG42750 - chr2L_6_18270001 chr2L_18270001 RAL-88 284 chr2L 18274058 18274075 chr2L 18274144 18274161 6 86 7.5 7.5 7.5 0.7 103 chr2L 18274058 intron CG42750 - chr2L 18274110 intron CG42750 - chr2L 18274161 intron CG42750 - chr2L_6_18270001 chr2L_18270001 RAL-88 285 chr2L 18334620 18334644 chr2L 18334705 18334729 5 85 8.0 4.0 6.0 0.7 109 chr2L 18334620 intron Fas3 + chr2L 18334674 intron Fas3 + chr2L 18334729 intron Fas3 + chr2L_5_18330001 chr2L_18330001 RAL-88 286 chr2L 18408027 18408055 chr2L 18412811 18412839 Doc 4 4784 1.5 0.0 0.8 2.2 4812 chr2L 18408027 intergenic not near genes chr2L 18410433 intergenic not near genes chr2L 18412839 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-88 287 chr2L 18561555 18561574 chr2L 18561656 18561675 6 101 4.0 2.5 3.2 1.4 120 chr2L 18561555 intron Pde11 - chr2L 18561615 intron Pde11 - chr2L 18561675 intron Pde11 - chr2L_6_18560001 chr2L_18560001 RAL-88 288 chr2L 18570692 18570714 chr2L 18570784 18570809 6 94 8.0 10.5 9.2 0.6 117 chr2L 18570692 intron Pde11 - chr2L 18570750 intron Pde11 - chr2L 18570809 intron Pde11 - chr2L_6_18570001 chr2L_18570001 RAL-88 289 chr2L 18762350 18762367 chr2L 18762436 18762442 5 82 11.5 8.5 10.0 0.5 92 chr2L 18762350 intergenic not near genes chr2L 18762396 intergenic ham - chr2L 18762442 intergenic ham - chr2L_5_18760001 chr2L_18760001 RAL-88 290 chr2L 18767638 18767661 chr2L 18767717 18767738 10 77 7.0 6.0 6.5 1.3 100 chr2L 18767638 intron ham - chr2L 18767688 intron ham - chr2L 18767738 intron ham - chr2L_10_18765001 chr2L_18765001 RAL-88 291 chr2L 18812559 18812581 chr2L 18812822 18812840 12 262 1.0 6.0 3.5 2.7 281 chr2L 18812559 intergenic CG17325 +,CG42305 + chr2L 18812700 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812840 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_12_18810001 chr2L_18810001 RAL-88 292 chr2L 18886036 18886055 chr2L 18886304 18886322 6 267 7.0 9.5 8.2 0.7 286 chr2L 18886036 intergenic not near genes chr2L 18886179 intergenic not near genes chr2L 18886322 intergenic not near genes chr2L_6_18885001 chr2L_18885001 RAL-88 293 chr2L 19209617 19209632 chr2L 19209702 19209717 4 85 3.0 3.0 3.0 1.0 100 chr2L 19209617 intergenic not near genes chr2L 19209667 intergenic not near genes chr2L 19209717 intergenic not near genes chr2L_4_19205001 chr2L_19205001 RAL-88 294 chr2L 19345014 19345038 chr2L 19357223 19357246 blood 10 12207 3.0 2.0 2.5 2.9 12232 chr2L 19345014 intron dnt - chr2L 19351130 intron dnt - chr2L 19357246 intron dnt - chr2L_10_19350001 chr2L_19350001 RAL-88 295 chr2L 19359181 19359212 chr2L 19359274 19359305 5 93 6.5 7.5 7.0 0.6 124 chr2L 19359181 intron dnt - chr2L 19359243 intron dnt - chr2L 19359305 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-88 296 chr2L 19481310 19481330 chr2L 19481411 19481430 7 100 2.5 8.0 5.2 1.1 120 chr2L 19481310 intergenic not near genes chr2L 19481370 intergenic not near genes chr2L 19481430 intergenic not near genes chr2L_7_19480001 chr2L_19480001 RAL-88 297 chr2L 19544612 19544626 chr2L 19544683 19544703 4 74 4.5 8.5 6.5 0.5 91 chr2L 19544612 exon ref(2)P + chr2L 19544658 exon ref(2)P + chr2L 19544703 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-88 298 chr2L 19562548 19562558 chr2L 19562627 19562638 4 78 7.0 9.5 8.2 0.4 90 chr2L 19562548 intron Tep5 + chr2L 19562593 intron Tep5 + chr2L 19562638 exon Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-88 299 chr2L 19605537 19605548 chr2L 19605603 19605612 5 67 5.5 7.0 6.2 0.7 75 chr2L 19605537 intron Lar + chr2L 19605574 intron Lar + chr2L 19605612 intron Lar + chr2L_5_19605001 chr2L_19605001 RAL-88 300 chr2L 19620100 19620127 chr2L 19621082 19621113 jockey 10 987 2.5 2.5 2.5 2.9 1013 chr2L 19620100 intron Lar + chr2L 19620606 intron Lar + chr2L 19621113 intron Lar + chr2L_10_19620001 chr2L_19620001 RAL-88 301 chr2L 19703537 19703566 chr2L 19712673 19712702 roo 10 9135 1.5 1.5 1.5 4.0 9165 chr2L 19703537 intron Lar + chr2L 19708120 intron Lar + chr2L 19712702 intron Lar + chr2L_10_19705001 chr2L_19705001 RAL-88 302 chr2L 19737370 19737388 chr2L 19740832 19740852 1360 4 3466 5.5 5.0 5.2 0.6 3482 chr2L 19737370 intergenic Nf-YB + chr2L 19739111 intergenic not near genes chr2L 19740852 intergenic not near genes chr2L_4_19735001 chr2L_19735001 RAL-88 303 chr2L 19754872 19754904 chr2L 19754956 19754986 4 82 5.5 6.5 6.0 0.6 114 chr2L 19754872 intron CG10631 - chr2L 19754929 intron CG10631 - chr2L 19754986 intron CG10631 - chr2L_4_19750001 chr2L_19750001 RAL-88 304 chr2L 19762809 19762837 chr2L 19763051 19763079 pogo 4 241 1.0 3.0 2.0 1.3 270 chr2L 19762809 5` UTR fbp - chr2L 19762944 intron fbp - chr2L 19763079 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-88 305 chr2L 19825478 19825490 chr2L 19825565 19825578 4 88 4.5 1.5 3.0 1.0 100 chr2L 19825478 intron sick + chr2L 19825528 intron sick + chr2L 19825578 intron sick + chr2L_4_19825001 chr2L_19825001 RAL-88 306 chr2L 19829623 19829645 chr2L 19829708 19829733 4 87 7.0 6.5 6.8 0.5 110 chr2L 19829623 intron sick + chr2L 19829678 intron sick + chr2L 19829733 intron sick + chr2L_4_19825001 chr2L_19825001 RAL-88 307 chr2L 19837275 19837309 chr2L 19837355 19837381 6 79 10.5 9.0 9.8 0.6 106 chr2L 19837275 intron sick + chr2L 19837328 intron sick + chr2L 19837381 intron sick + chr2L_6_19835001 chr2L_19835001 RAL-88 308 chr2L 19846262 19846269 chr2L 19846343 19846350 4 81 4.0 8.5 6.2 0.6 88 chr2L 19846262 intron sick + chr2L 19846306 intron sick + chr2L 19846350 intron sick + chr2L_4_19845001 chr2L_19845001 RAL-88 309 chr2L 19911298 19911323 chr2L 19911386 19911411 4 88 9.0 11.5 10.2 0.4 113 chr2L 19911298 intron,3` UTR sick +,CR43097 - chr2L 19911354 intron,3` UTR sick +,CR43097 - chr2L 19911411 intron,3` UTR sick +,CR43097 - chr2L_4_19910001 chr2L_19910001 RAL-88 310 chr2L 20005875 20005904 chr2L 20010951 20010980 flea 7 5075 0.0 2.5 1.2 3.2 5105 chr2L 20005875 intron CG43861 - chr2L 20008428 intron CG43861 - chr2L 20010980 intron CG43861 - chr2L_7_20005001 chr2L_20005001 RAL-88 311 chr2L 20041429 20041449 chr2L 20041514 20041534 6 84 8.5 7.5 8.0 0.7 105 chr2L 20041429 intron sNPF + chr2L 20041482 intron sNPF + chr2L 20041534 intron sNPF + chr2L_6_20040001 chr2L_20040001 RAL-88 312 chr2L 20085472 20085493 chr2L 20085564 20085585 5 92 12.0 13.0 12.5 0.4 113 chr2L 20085472 intron neb + chr2L 20085528 intron neb + chr2L 20085585 intron neb + chr2L_5_20085001 chr2L_20085001 RAL-88 313 chr2L 20303164 20303191 chr2L 20310632 20310659 blood 5 7468 0.5 1.0 0.8 2.8 7495 chr2L 20303164 intergenic not near genes chr2L 20306912 intergenic not near genes chr2L 20310659 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-88 314 chr2L 20368117 20368146 chr2L 20368266 20368294 5 148 8.5 8.0 8.2 0.5 177 chr2L 20368117 intergenic not near genes chr2L 20368206 intergenic not near genes chr2L 20368294 intergenic not near genes chr2L_5_20365001 chr2L_20365001 RAL-88 315 chr2L 20372231 20372245 chr2L 20372472 20372486 pogo 4 241 0.0 2.0 1.0 2.0 255 chr2L 20372231 intergenic Ugt37a1 - chr2L 20372358 intergenic Ugt37a1 - chr2L 20372486 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-88 316 chr2L 20383445 20383470 chr2L 20383537 20383559 7 89 5.0 8.0 6.5 0.9 114 chr2L 20383445 intergenic not near genes chr2L 20383502 intergenic not near genes chr2L 20383559 intergenic not near genes chr2L_7_20380001 chr2L_20380001 RAL-88 317 chr2L 20498696 20498705 chr2L 20498795 20498804 4 99 4.0 3.5 3.8 0.8 108 chr2L 20498696 intergenic not near genes chr2L 20498750 intergenic not near genes chr2L 20498804 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-88 318 chr2L 20568666 20568681 chr2L 20569056 20569071 X-element 6 390 2.0 3.0 2.5 1.7 405 chr2L 20568666 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569071 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-88 319 chr2L 20570788 20570797 chr2L 20570869 20570878 4 81 6.5 6.0 6.2 0.6 90 chr2L 20570788 intron CR45347 + chr2L 20570833 intron CR45347 + chr2L 20570878 intron CR45347 + chr2L_4_20570001 chr2L_20570001 RAL-88 320 chr2L 20576226 20576246 chr2L 20583691 20583714 blood 7 7466 2.5 3.5 3.0 1.8 7488 chr2L 20576226 intergenic not near genes chr2L 20579970 intergenic not near genes chr2L 20583714 3` UTR CR44909 - chr2L_7_20575001 chr2L_20575001 RAL-88 321 chr2L 20668696 20668720 chr2L 20668772 20668796 4 76 3.0 4.5 3.8 0.8 100 chr2L 20668696 intron CG31678 - chr2L 20668746 intron CG31678 - chr2L 20668796 intron CG31678 - chr2L_4_20665001 chr2L_20665001 RAL-88 322 chr2L 20901474 20901485 chr2L 20902636 20902647 1360 4 1163 2.0 6.0 4.0 0.8 1173 chr2L 20901474 intron,intron CG43739 -,sky - chr2L 20902060 intron,intron CG43739 -,sky - chr2L 20902647 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-88 323 chr2L 20967084 20967097 chr2L 20967169 20967183 4 86 6.0 3.0 4.5 0.7 99 chr2L 20967084 3` UTR CG42238 - chr2L 20967134 3` UTR CG42238 - chr2L 20967183 3` UTR CG42238 - chr2L_4_20965001 chr2L_20965001 RAL-88 324 chr2L 20976641 20976678 chr2L 20981456 20981492 X-element 5 4815 2.0 1.5 1.8 1.8 4851 chr2L 20976641 intron CG42238 - chr2L 20979066 intron CG42238 - chr2L 20981492 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-88 325 chr2L 20984746 20984766 chr2L 20984836 20984843 4 88 11.0 10.0 10.5 0.3 97 chr2L 20984746 intron CG42238 - chr2L 20984794 intron CG42238 - chr2L 20984843 intron CG42238 - chr2L_4_20980001 chr2L_20980001 RAL-88 326 chr2L 20986918 20986932 chr2L 20987255 20987265 4 336 11.5 2.0 6.8 0.5 347 chr2L 20986918 intron CG42238 - chr2L 20987092 intron CG42238 - chr2L 20987265 intron CG42238 - chr2L_4_20985001 chr2L_20985001 RAL-88 327 chr2L 21020278 21020289 chr2L 21023955 21023965 NOF 4 3677 4.5 4.0 4.2 0.8 3687 chr2L 21020278 intron CG42238 - chr2L 21022122 intron CG42238 - chr2L 21023965 intron CG42238 - chr2L_4_21020001 chr2L_21020001 RAL-88 328 chr2L 21020290 21020306 chr2L 21023954 21023983 NOF 6 3674 3.0 4.0 3.5 1.3 3693 chr2L 21020290 intron CG42238 - chr2L 21022136 intron CG42238 - chr2L 21023983 intron CG42238 - chr2L_6_21020001 chr2L_21020001 RAL-88 329 chr2L 21041135 21041164 chr2L 21049396 21049425 Tirant 11 8259 3.5 4.5 4.0 2.2 8290 chr2L 21041135 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049425 intron CG42238 - chr2L_11_21045001 chr2L_21045001 RAL-88 330 chr2L 21076405 21076425 chr2L 21076492 21076512 5 87 8.0 9.0 8.5 0.5 107 chr2L 21076405 intron tadr + chr2L 21076458 intron tadr + chr2L 21076512 intron tadr + chr2L_5_21075001 chr2L_21075001 RAL-88 331 chr2L 21104476 21104502 chr2L 21104562 21104583 5 85 9.0 7.0 8.0 0.6 107 chr2L 21104476 intergenic Nhe2 +,CG9257 +,CR43809 - chr2L 21104530 intergenic Nhe2 +,CG9257 +,CR43809 - chr2L 21104583 5` UTR Nhe2 + chr2L_5_21100001 chr2L_21100001 RAL-88 332 chr2L 21199228 21199257 chr2L 21199305 21199321 13 76 3.0 1.5 2.2 4.1 93 chr2L 21199228 intergenic CG31624 -,Ret - chr2L 21199274 3` UTR CG31624 - chr2L 21199321 3` UTR CG31624 - chr2L_13_21195001 chr2L_21195001 RAL-88 333 chr2L 21286616 21286633 chr2L 21286694 21286712 5 78 1.5 1.0 1.2 2.3 96 chr2L 21286616 exon Mio - chr2L 21286664 intron Mio - chr2L 21286712 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-88 334 chr2L 21684303 21684334 chr2L 21684566 21684597 4 262 4.5 2.0 3.2 1.0 294 chr2L 21684303 intron CG31619 + chr2L 21684450 intron CG31619 + chr2L 21684597 5` UTR CG31619 + chr2L_4_21680001 chr2L_21680001 RAL-88 335 chr2L 21755506 21755523 chr2L 21755625 21755647 6 123 1.0 5.0 3.0 1.5 141 chr2L 21755506 intron step - chr2L 21755576 intron step - chr2L 21755647 intron step - chr2L_6_21755001 chr2L_21755001 RAL-88 336 chr2L 21771230 21771257 chr2L 21771337 21771363 8 106 6.5 7.0 6.8 1.0 133 chr2L 21771230 intron CG31612 - chr2L 21771296 intron CG31612 - chr2L 21771363 intron CG31612 - chr2L_8_21770001 chr2L_21770001 RAL-88 337 chr2L 21825147 21825178 chr2L 21825581 21825612 5 434 3.5 3.0 3.2 1.2 465 chr2L 21825147 intergenic not near genes chr2L 21825380 intergenic not near genes chr2L 21825612 intergenic not near genes chr2L_5_21825001 chr2L_21825001 RAL-88 338 chr2L 21886626 21886654 chr2L 21886704 21886732 8 79 10.0 10.0 10.0 0.7 106 chr2L 21886626 intergenic not near genes chr2L 21886679 intergenic not near genes chr2L 21886732 intergenic not near genes chr2L_8_21885001 chr2L_21885001 RAL-88 339 chr2L 21981689 21981716 chr2L 21990854 21990876 roo 10 9164 1.5 4.0 2.8 2.6 9187 chr2L 21981689 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990876 exon CG2528 - chr2L_10_21985001 chr2L_21985001 RAL-88 340 chr2L 22077290 22077318 chr2L 22077371 22077399 4 81 5.0 4.0 4.5 0.7 109 chr2L 22077290 intergenic not near genes chr2L 22077344 intergenic not near genes chr2L 22077399 intergenic not near genes chr2L_4_22075001 chr2L_22075001 RAL-88 341 chr2L 22239427 22239446 chr2L 22239508 22239526 5 80 10.0 6.0 8.0 0.6 99 chr2L 22239427 3` UTR CR43765 - chr2L 22239476 3` UTR CR43765 - chr2L 22239526 3` UTR CR43765 - chr2L_5_22235001 chr2L_22235001 RAL-88 342 chr2L 22558389 22558409 chr2L 22558698 22558720 4 310 3.0 3.0 3.0 1.0 331 chr2L 22558389 intergenic not near genes chr2L 22558554 intergenic not near genes chr2L 22558720 intergenic not near genes chr2L_4_22555001 chr2L_22555001 RAL-88 343 chr2R 469962 469983 chr2R 473202 473224 F-element 5 3241 2.0 2.5 2.2 1.6 3262 chr2R 469962 intergenic not near genes chr2R 471593 intergenic not near genes chr2R 473224 intergenic not near genes chr2R_5_470001 chr2R_470001 RAL-88 344 chr2R 529325 529352 chr2R 537950 537976 Max-element 6 8624 1.0 4.0 2.5 1.7 8651 chr2R 529325 intron CG40378 + chr2R 533650 intron CG40378 + chr2R 537976 intron CG40378 + chr2R_6_530001 chr2R_530001 RAL-88 345 chr2R 552762 552776 chr2R 553973 553992 1360 6 1214 6.0 3.0 4.5 1.1 1230 chr2R 552762 intron CG40378 + chr2R 553377 intron CG40378 + chr2R 553992 intron CG40378 + chr2R_6_550001 chr2R_550001 RAL-88 346 chr2R 552778 552789 chr2R 553969 553986 1360 8 1205 3.0 3.0 3.0 2.0 1208 chr2R 552778 intron CG40378 + chr2R 553382 intron CG40378 + chr2R 553986 intron CG40378 + chr2R_8_550001 chr2R_550001 RAL-88 347 chr2R 2015148 2015165 chr2R 2015225 2015242 4 76 0.5 0.5 0.5 2.7 94 chr2R 2015148 intron CG17684 - chr2R 2015195 intron CG17684 - chr2R 2015242 intron CG17684 - chr2R_4_2015001 chr2R_2015001 RAL-88 348 chr2R 2498990 2499014 chr2R 2508137 2508159 roo 5 9147 5.0 2.5 3.8 1.0 9169 chr2R 2498990 intron MFS17 - chr2R 2503574 intron MFS17 - chr2R 2508159 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-88 349 chr2R 2508314 2508332 chr2R 2508452 2508470 4 138 8.0 8.0 8.0 0.4 156 chr2R 2508314 intron MFS17 - chr2R 2508392 intron MFS17 - chr2R 2508470 intron MFS17 - chr2R_4_2505001 chr2R_2505001 RAL-88 350 chr2R 3144096 3144110 chr2R 3393374 3393388 Doc 6 249278 7.0 5.0 6.0 0.9 249292 chr2R 3144096 intron CG42596 + chr2R 3268742 intergenic not near genes chr2R 3393388 intergenic not near genes chr2R_6_3265001 chr2R_3265001 RAL-88 351 chr2R 3291952 3292102 chr2R 3915115 3915260 5 623164 10.0 16.0 13.0 0.4 623308 chr2R 3291952 intergenic not near genes chr2R 3603606 intergenic not near genes chr2R 3915260 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-88 352 chr2R 3293746 3293766 chr2R 3293823 3293844 4 78 2.0 1.5 1.8 1.4 98 chr2R 3293746 intergenic not near genes chr2R 3293795 intergenic not near genes chr2R 3293844 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-88 353 chr2R 3818933 3818943 chr2R 3819049 3819059 5 116 5.0 2.5 3.8 1.0 126 chr2R 3818933 intergenic not near genes chr2R 3818996 intergenic not near genes chr2R 3819059 intergenic not near genes chr2R_5_3815001 chr2R_3815001 RAL-88 354 chr2R 4312957 4312980 chr2R 4313041 4313064 8 84 1.5 0.5 1.0 4.0 107 chr2R 4312957 intergenic not near genes chr2R 4313010 intergenic not near genes chr2R 4313064 intergenic not near genes chr2R_8_4310001 chr2R_4310001 RAL-88 355 chr2R 4329552 4329576 chr2R 4329638 4329661 4 85 8.0 5.5 6.8 0.5 109 chr2R 4329552 intron Gprk1 - chr2R 4329606 intron Gprk1 - chr2R 4329661 intron Gprk1 - chr2R_4_4325001 chr2R_4325001 RAL-88 356 chr2R 4622953 4622985 chr2R 4624112 4624144 1360 9 1158 2.5 1.0 1.8 3.2 1191 chr2R 4622953 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624144 intergenic not near genes chr2R_9_4620001 chr2R_4620001 RAL-88 357 chr2R 4750345 4750377 chr2R 4751502 4751529 1360 4 1154 4.5 7.5 6.0 0.6 1184 chr2R 4750345 intron conu + chr2R 4750937 intron conu + chr2R 4751529 intron conu + chr2R_4_4750001 chr2R_4750001 RAL-88 358 chr2R 4838871 4838892 chr2R 4840394 4840411 transib2 6 1522 3.0 3.0 3.0 1.5 1540 chr2R 4838871 intergenic not near genes chr2R 4839641 intergenic not near genes chr2R 4840411 intergenic not near genes chr2R_6_4835001 chr2R_4835001 RAL-88 359 chr2R 4933360 4933386 chr2R 4933924 4933934 8 558 6.5 7.0 6.8 1.0 574 chr2R 4933360 intron Ir41a + chr2R 4933647 intron Ir41a + chr2R 4933934 intron Ir41a + chr2R_8_4930001 chr2R_4930001 RAL-88 360 chr2R 4970250 4970278 chr2R 4970320 4970354 4 74 14.0 12.0 13.0 0.3 104 chr2R 4970250 intron Ir41a + chr2R 4970302 intron Ir41a + chr2R 4970354 intron Ir41a + chr2R_4_4970001 chr2R_4970001 RAL-88 361 chr2R 5019280 5019309 chr2R 5019366 5019395 7 86 3.0 1.0 2.0 2.3 115 chr2R 5019280 intron Ir41a + chr2R 5019338 intron Ir41a + chr2R 5019395 intron Ir41a + chr2R_7_5015001 chr2R_5015001 RAL-88 362 chr2R 5038530 5038535 chr2R 5039325 5039332 5 796 2.5 2.0 2.2 1.6 802 chr2R 5038530 intergenic not near genes chr2R 5038931 intergenic not near genes chr2R 5039332 intergenic not near genes chr2R_5_5035001 chr2R_5035001 RAL-88 363 chr2R 5075225 5075243 chr2R 5075353 5075370 6 128 2.5 0.0 1.2 2.7 145 chr2R 5075225 intergenic not near genes chr2R 5075298 intergenic not near genes chr2R 5075370 intergenic not near genes chr2R_6_5075001 chr2R_5075001 RAL-88 364 chr2R 5075349 5075370 chr2R 5075765 5075786 5 416 0.0 2.5 1.2 2.3 437 chr2R 5075349 intergenic not near genes chr2R 5075568 intergenic not near genes chr2R 5075786 intergenic not near genes chr2R_5_5075001 chr2R_5075001 RAL-88 365 chr2R 5080792 5080807 chr2R 5080883 5080898 7 90 10.0 6.0 8.0 0.8 106 chr2R 5080792 intergenic not near genes chr2R 5080845 intergenic not near genes chr2R 5080898 intergenic not near genes chr2R_7_5080001 chr2R_5080001 RAL-88 366 chr2R 5237348 5237370 chr2R 5237430 5237452 5 81 1.5 0.5 1.0 2.5 104 chr2R 5237348 intron Nipped-A - chr2R 5237400 intron Nipped-A - chr2R 5237452 intron Nipped-A - chr2R_5_5235001 chr2R_5235001 RAL-88 367 chr2R 5266118 5266143 chr2R 5266201 5266223 6 81 16.0 19.5 17.8 0.3 105 chr2R 5266118 intron d4 + chr2R 5266170 intron d4 + chr2R 5266223 intron d4 + chr2R_6_5265001 chr2R_5265001 RAL-88 368 chr2R 5396256 5396280 chr2R 5396494 5396518 4 238 11.0 13.5 12.2 0.3 262 chr2R 5396256 intergenic not near genes chr2R 5396387 intergenic not near genes chr2R 5396518 intergenic not near genes chr2R_4_5395001 chr2R_5395001 RAL-88 369 chr2R 5472369 5472392 chr2R 5472461 5472485 5 92 4.5 3.0 3.8 1.0 116 chr2R 5472369 intron CG30440 - chr2R 5472427 intron CG30440 - chr2R 5472485 intron CG30440 - chr2R_5_5470001 chr2R_5470001 RAL-88 370 chr2R 5473369 5473397 chr2R 5473464 5473492 5 94 6.5 8.5 7.5 0.6 123 chr2R 5473369 intron CG30440 - chr2R 5473430 intron CG30440 - chr2R 5473492 intron CG30440 - chr2R_5_5470001 chr2R_5470001 RAL-88 371 chr2R 5682662 5682687 chr2R 5682754 5682775 7 91 9.0 11.5 10.2 0.6 113 chr2R 5682662 intron scaf - chr2R 5682718 intron scaf - chr2R 5682775 intron scaf - chr2R_7_5680001 chr2R_5680001 RAL-88 372 chr2R 5861286 5861318 chr2R 5861407 5861439 9 120 3.0 4.5 3.8 1.9 153 chr2R 5861286 intergenic dpr12 + chr2R 5861362 intergenic not near genes chr2R 5861439 intergenic not near genes chr2R_9_5860001 chr2R_5860001 RAL-88 373 chr2R 5869277 5869301 chr2R 5874352 5874372 flea 5 5075 1.5 2.5 2.0 1.7 5095 chr2R 5869277 intergenic not near genes chr2R 5871824 intergenic not near genes chr2R 5874372 intergenic not near genes chr2R_5_5870001 chr2R_5870001 RAL-88 374 chr2R 5876867 5876896 chr2R 5876969 5876998 7 99 9.5 8.5 9.0 0.7 131 chr2R 5876867 intergenic not near genes chr2R 5876932 intergenic not near genes chr2R 5876998 intergenic not near genes chr2R_7_5875001 chr2R_5875001 RAL-88 375 chr2R 5878927 5878955 chr2R 5879007 5879031 6 79 1.0 1.0 1.0 3.0 104 chr2R 5878927 intergenic CG44438 - chr2R 5878979 intergenic CG44438 - chr2R 5879031 intergenic CG44438 - chr2R_6_5875001 chr2R_5875001 RAL-88 376 chr2R 5947934 5947961 chr2R 5948085 5948111 4 149 5.0 4.0 4.5 0.7 177 chr2R 5947934 intergenic not near genes chr2R 5948022 intergenic not near genes chr2R 5948111 intergenic not near genes chr2R_4_5945001 chr2R_5945001 RAL-88 377 chr2R 6096725 6096736 chr2R 6101915 6101934 BS 4 5195 5.5 4.0 4.8 0.7 5209 chr2R 6096725 intron EcR - chr2R 6099330 intron EcR - chr2R 6101934 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-88 378 chr2R 6126945 6126963 chr2R 6127053 6127071 4 108 6.0 2.5 4.2 0.8 126 chr2R 6126945 intron EcR - chr2R 6127008 intron EcR - chr2R 6127071 intron EcR - chr2R_4_6125001 chr2R_6125001 RAL-88 379 chr2R 6168198 6168224 chr2R 6168279 6168306 5 82 1.0 3.0 2.0 1.7 108 chr2R 6168198 intron EcR - chr2R 6168252 intron EcR - chr2R 6168306 intron EcR - chr2R_5_6165001 chr2R_6165001 RAL-88 380 chr2R 6633199 6633219 chr2R 6633276 6633296 7 77 3.0 2.0 2.5 2.0 97 chr2R 6633199 intergenic Vha16-1 -,Trap1 - chr2R 6633248 intergenic Vha16-1 -,Trap1 - chr2R 6633296 intergenic Vha16-1 -,Trap1 - chr2R_7_6630001 chr2R_6630001 RAL-88 381 chr2R 6646799 6646816 chr2R 6647072 6647089 5 273 6.0 5.5 5.8 0.7 290 chr2R 6646799 intergenic not near genes chr2R 6646944 intergenic not near genes chr2R 6647089 intergenic not near genes chr2R_5_6645001 chr2R_6645001 RAL-88 382 chr2R 6691135 6691148 chr2R 6691214 6691227 6 79 8.5 8.0 8.2 0.7 92 chr2R 6691135 intron CG9422 + chr2R 6691181 intron CG9422 + chr2R 6691227 intron CG9422 + chr2R_6_6690001 chr2R_6690001 RAL-88 383 chr2R 6825441 6825466 chr2R 6825527 6825558 6 91 4.0 3.0 3.5 1.3 117 chr2R 6825441 intergenic not near genes chr2R 6825500 intergenic not near genes chr2R 6825558 intergenic not near genes chr2R_6_6825001 chr2R_6825001 RAL-88 384 chr2R 6865705 6865740 chr2R 6865784 6865819 5 79 0.0 2.0 1.0 2.5 114 chr2R 6865705 intron coro - chr2R 6865762 intron coro - chr2R 6865819 intron coro - chr2R_5_6865001 chr2R_6865001 RAL-88 385 chr2R 6921663 6921695 chr2R 6921756 6921787 8 90 6.0 9.5 7.8 0.9 124 chr2R 6921663 3` UTR CG30158 + chr2R 6921725 3` UTR CG30158 + chr2R 6921787 3` UTR CG30158 + chr2R_8_6920001 chr2R_6920001 RAL-88 386 chr2R 6962458 6962481 chr2R 6962815 6962838 5 357 6.0 9.0 7.5 0.6 380 chr2R 6962458 intron,intron mim -,CheB42c - chr2R 6962648 intron,intron mim -,CheB42c - chr2R 6962838 intron,intron mim -,CheB42c - chr2R_5_6960001 chr2R_6960001 RAL-88 387 chr2R 6965262 6965294 chr2R 6965348 6965367 4 82 14.5 10.5 12.5 0.3 105 chr2R 6965262 intron,intron mim -,CheB42c - chr2R 6965314 intron,intron mim -,CheB42c - chr2R 6965367 intron,intron mim -,CheB42c - chr2R_4_6965001 chr2R_6965001 RAL-88 388 chr2R 7235813 7235849 chr2R 7240904 7240941 jockey 10 5092 3.0 0.5 1.8 3.6 5128 chr2R 7235813 intergenic not near genes chr2R 7238377 intergenic not near genes chr2R 7240941 intergenic not near genes chr2R_10_7235001 chr2R_7235001 RAL-88 389 chr2R 7250741 7250755 chr2R 7250819 7250844 5 83 1.5 2.0 1.8 1.8 103 chr2R 7250741 intergenic Gadd45 + chr2R 7250792 intergenic Gadd45 + chr2R 7250844 intergenic Gadd45 + chr2R_5_7250001 chr2R_7250001 RAL-88 390 chr2R 7290196 7290224 chr2R 7290298 7290326 7 102 2.0 2.0 2.0 2.3 130 chr2R 7290196 intron pwn + chr2R 7290261 intron pwn + chr2R 7290326 intron pwn + chr2R_7_7290001 chr2R_7290001 RAL-88 391 chr2R 7353384 7353414 chr2R 7353490 7353520 10 106 3.5 0.5 2.0 3.3 136 chr2R 7353384 intron Dscam1 - chr2R 7353452 intron Dscam1 - chr2R 7353520 intron Dscam1 - chr2R_10_7350001 chr2R_7350001 RAL-88 392 chr2R 7417912 7418167 chr2R 7417998 7418245 6 80 3.5 4.0 3.8 1.2 333 chr2R 7417912 intergenic not near genes chr2R 7418078 intergenic not near genes chr2R 7418245 intergenic not near genes chr2R_6_7415001 chr2R_7415001 RAL-88 393 chr2R 7459277 7459301 chr2R 7459365 7459389 6 88 1.5 0.0 0.8 3.3 112 chr2R 7459277 intergenic Inos -,CG11141 - chr2R 7459333 intergenic CG11141 -,Inos - chr2R 7459389 intergenic CG11141 - chr2R_6_7455001 chr2R_7455001 RAL-88 394 chr2R 7529059 7529085 chr2R 7529146 7529172 12 87 4.5 4.0 4.2 2.3 113 chr2R 7529059 intron Drat - chr2R 7529116 intron Drat - chr2R 7529172 intron Drat - chr2R_12_7525001 chr2R_7525001 RAL-88 395 chr2R 7608411 7608435 chr2R 7613614 7613638 I-element 6 5203 0.5 0.0 0.2 5.0 5227 chr2R 7608411 intron CG1358 - chr2R 7611024 intron CG1358 - chr2R 7613638 intron CG1358 - chr2R_6_7610001 chr2R_7610001 RAL-88 396 chr2R 7621288 7621319 chr2R 7621394 7621425 6 106 0.5 4.0 2.2 1.9 137 chr2R 7621288 intergenic not near genes chr2R 7621356 intergenic not near genes chr2R 7621425 intergenic CR44444 - chr2R_6_7620001 chr2R_7620001 RAL-88 397 chr2R 7742768 7742793 chr2R 7742850 7742873 9 81 1.0 4.0 2.5 2.6 105 chr2R 7742768 intron,intron CG30497 -,CG45093 - chr2R 7742820 intron,intron CG30497 -,CG45093 - chr2R 7742873 intron,intron CG30497 -,CG45093 - chr2R_9_7740001 chr2R_7740001 RAL-88 398 chr2R 7743480 7743504 chr2R 7743561 7743585 10 81 5.5 2.5 4.0 2.0 105 chr2R 7743480 intron,intron CG30497 -,CG45093 - chr2R 7743532 intron,intron CG30497 -,CG45093 - chr2R 7743585 intron,intron CG30497 -,CG45093 - chr2R_10_7740001 chr2R_7740001 RAL-88 399 chr2R 7815673 7815703 chr2R 7822142 7822172 Burdock 6 6469 3.5 3.0 3.2 1.4 6499 chr2R 7815673 intergenic CG1882 + chr2R 7818922 intergenic not near genes chr2R 7822172 3` UTR cathD - chr2R_6_7815001 chr2R_7815001 RAL-88 400 chr2R 7869188 7869221 chr2R 7873974 7874001 Doc 10 4783 2.5 4.5 3.5 2.2 4813 chr2R 7869188 intron Dgk - chr2R 7871594 intron Dgk - chr2R 7874001 intron Dgk - chr2R_10_7870001 chr2R_7870001 RAL-88 401 chr2R 7897138 7897155 chr2R 7897227 7897244 6 88 0.0 5.5 2.8 1.6 106 chr2R 7897138 intron CG30377 + chr2R 7897191 intron CG30377 + chr2R 7897244 intron CG30377 + chr2R_6_7895001 chr2R_7895001 RAL-88 402 chr2R 8006846 8006880 chr2R 8007005 8007039 6 159 1.0 0.5 0.8 3.3 193 chr2R 8006846 intergenic Odc1 +,Odc2 + chr2R 8006942 intergenic Odc1 +,Odc2 + chr2R 8007039 intergenic Odc2 +,Odc1 + chr2R_6_8005001 chr2R_8005001 RAL-88 403 chr2R 8008865 8008892 chr2R 8008964 8008988 9 99 3.0 4.5 3.8 1.9 123 chr2R 8008865 exon Odc2 + chr2R 8008926 exon Odc2 + chr2R 8008988 exon Odc2 + chr2R_9_8005001 chr2R_8005001 RAL-88 404 chr2R 8015646 8015682 chr2R 8017668 8017699 4 2021 1.5 2.5 2.0 1.3 2053 chr2R 8015646 intergenic mir-4981 + chr2R 8016672 intergenic not near genes chr2R 8017699 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-88 405 chr2R 8067065 8067098 chr2R 8067149 8067182 10 84 1.5 2.0 1.8 3.6 117 chr2R 8067065 intron CG17977 - chr2R 8067124 intron CG17977 - chr2R 8067182 exon CG17977 - chr2R_10_8065001 chr2R_8065001 RAL-88 406 chr2R 8076678 8076694 chr2R 8076758 8076767 5 79 4.5 0.5 2.5 1.4 89 chr2R 8076678 intron lig + chr2R 8076722 intron lig + chr2R 8076767 intron lig + chr2R_5_8075001 chr2R_8075001 RAL-88 407 chr2R 8155581 8155610 chr2R 8155670 8155692 11 88 3.0 3.5 3.2 2.6 111 chr2R 8155581 intron,intron Lpin -,kermit - chr2R 8155636 intron,intron Lpin -,kermit - chr2R 8155692 intron,intron Lpin -,kermit - chr2R_11_8155001 chr2R_8155001 RAL-88 408 chr2R 8166537 8166556 chr2R 8168726 8168751 5 2191 23.0 25.0 24.0 0.2 2214 chr2R 8166537 exon Rs1 + chr2R 8167644 exon Rs1 + chr2R 8168751 exon Gasz + chr2R_5_8165001 chr2R_8165001 RAL-88 409 chr2R 8330872 8330894 chr2R 8331358 8331380 roo 5 485 1.5 3.0 2.2 1.6 508 chr2R 8330872 intron pdm3 + chr2R 8331126 intron pdm3 + chr2R 8331380 intron pdm3 + chr2R_5_8330001 chr2R_8330001 RAL-88 410 chr2R 8398224 8398240 chr2R 8403000 8403021 Doc 6 4780 6.0 4.0 5.0 1.0 4797 chr2R 8398224 intron CG2121 - chr2R 8400622 intron CG2121 - chr2R 8403021 intron CG2121 - chr2R_6_8400001 chr2R_8400001 RAL-88 411 chr2R 8408844 8408864 chr2R 8408967 8408991 8 127 1.0 5.5 3.2 1.9 147 chr2R 8408844 intron CG2121 - chr2R 8408918 intron CG2121 - chr2R 8408991 intron CG2121 - chr2R_8_8405001 chr2R_8405001 RAL-88 412 chr2R 8452035 8452065 chr2R 8452118 8452148 10 82 1.5 1.0 1.2 4.5 113 chr2R 8452035 intergenic Mal-A1 - chr2R 8452092 intergenic Mal-A1 - chr2R 8452148 intergenic Mal-A1 - chr2R_10_8450001 chr2R_8450001 RAL-88 413 chr2R 8566033 8566059 chr2R 8566984 8567011 1360 9 951 3.0 2.5 2.8 2.4 978 chr2R 8566033 5` UTR Cyp6a14 - chr2R 8566522 5` UTR Cyp6a14 - chr2R 8567011 5` UTR Cyp6a14 - chr2R_9_8565001 chr2R_8565001 RAL-88 414 chr2R 8588242 8588254 chr2R 8588324 8588337 4 80 1.0 13.5 7.2 0.5 95 chr2R 8588242 intergenic not near genes chr2R 8588290 intergenic not near genes chr2R 8588337 intergenic not near genes chr2R_4_8585001 chr2R_8585001 RAL-88 415 chr2R 8595800 8595830 chr2R 8595936 8595967 4 137 0.5 0.0 0.2 3.3 167 chr2R 8595800 intergenic not near genes chr2R 8595884 intergenic not near genes chr2R 8595967 intergenic not near genes chr2R_4_8595001 chr2R_8595001 RAL-88 416 chr2R 8607336 8607366 chr2R 8607812 8607843 10 476 2.0 2.0 2.0 3.3 507 chr2R 8607336 intron rgr + chr2R 8607590 intron rgr + chr2R 8607843 intron rgr + chr2R_10_8605001 chr2R_8605001 RAL-88 417 chr2R 8722763 8722794 chr2R 8723004 8723033 pogo 9 240 3.0 2.0 2.5 2.6 270 chr2R 8722763 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723033 intron CG14767 - chr2R_9_8720001 chr2R_8720001 RAL-88 418 chr2R 8777930 8777942 chr2R 8784134 8784146 diver 4 6203 1.0 2.5 1.8 1.4 6216 chr2R 8777930 intergenic not near genes chr2R 8781038 intergenic not near genes chr2R 8784146 intergenic not near genes chr2R_4_8780001 chr2R_8780001 RAL-88 419 chr2R 8801320 8801355 chr2R 8801410 8801445 10 90 1.0 0.5 0.8 5.6 125 chr2R 8801320 intron sns + chr2R 8801382 intron sns + chr2R 8801445 intron sns + chr2R_10_8800001 chr2R_8800001 RAL-88 420 chr2R 8820814 8820843 chr2R 8820942 8820971 7 127 1.5 1.5 1.5 2.8 157 chr2R 8820814 intron sns + chr2R 8820892 intron sns + chr2R 8820971 intron sns + chr2R_7_8820001 chr2R_8820001 RAL-88 421 chr2R 8844492 8844509 chr2R 8844615 8844632 5 121 3.0 4.5 3.8 1.0 140 chr2R 8844492 intron sns + chr2R 8844562 intron sns + chr2R 8844632 intron sns + chr2R_5_8840001 chr2R_8840001 RAL-88 422 chr2R 9055798 9055818 chr2R 9055875 9055898 6 77 3.0 2.5 2.8 1.6 100 chr2R 9055798 intron CG13743 - chr2R 9055848 intron CG13743 - chr2R 9055898 intron CG13743 - chr2R_6_9055001 chr2R_9055001 RAL-88 423 chr2R 9212696 9212718 chr2R 9213180 9213201 roo 8 485 3.0 2.5 2.8 2.1 505 chr2R 9212696 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213201 5` UTR CR45309 + chr2R_8_9210001 chr2R_9210001 RAL-88 424 chr2R 9267977 9268010 chr2R 9268063 9268096 10 86 1.0 1.5 1.2 4.5 119 chr2R 9267977 intron Pkn - chr2R 9268036 intron Pkn - chr2R 9268096 intron Pkn - chr2R_10_9265001 chr2R_9265001 RAL-88 425 chr2R 9378110 9378140 chr2R 9378191 9378222 21 80 3.0 2.5 2.8 5.5 112 chr2R 9378110 intron CG13954 - chr2R 9378166 intron CG13954 - chr2R 9378222 intron CG13954 - chr2R_21_9375001 chr2R_9375001 RAL-88 426 chr2R 9407837 9407850 chr2R 9407921 9407937 6 90 4.5 1.5 3.0 1.5 100 chr2R 9407837 intron wun - chr2R 9407887 intron wun - chr2R 9407937 intron wun - chr2R_6_9405001 chr2R_9405001 RAL-88 427 chr2R 9510666 9510695 chr2R 9510781 9510811 7 116 2.5 3.0 2.8 1.8 145 chr2R 9510666 intron brp + chr2R 9510738 intron brp + chr2R 9510811 intron brp + chr2R_7_9510001 chr2R_9510001 RAL-88 428 chr2R 9561825 9561848 chr2R 9561913 9561936 5 88 1.0 1.0 1.0 2.5 111 chr2R 9561825 3` UTR,intron CR45281 -,CG1809 + chr2R 9561880 3` UTR,intron CR45281 -,CG1809 + chr2R 9561936 3` UTR,intron CR45281 -,CG1809 + chr2R_5_9560001 chr2R_9560001 RAL-88 429 chr2R 9631391 9631417 chr2R 9631481 9631507 9 90 1.5 3.5 2.5 2.6 116 chr2R 9631391 intron Mmp2 - chr2R 9631449 intron Mmp2 - chr2R 9631507 intron Mmp2 - chr2R_9_9630001 chr2R_9630001 RAL-88 430 chr2R 9642880 9642897 chr2R 9642964 9642979 9 84 3.0 3.5 3.2 2.1 99 chr2R 9642880 intron Mmp2 - chr2R 9642930 intron Mmp2 - chr2R 9642979 intron Mmp2 - chr2R_9_9640001 chr2R_9640001 RAL-88 431 chr2R 9699411 9699439 chr2R 9699497 9699525 7 86 7.0 2.0 4.5 1.3 114 chr2R 9699411 intergenic not near genes chr2R 9699468 intergenic not near genes chr2R 9699525 intergenic not near genes chr2R_7_9695001 chr2R_9695001 RAL-88 432 chr2R 9830288 9830299 chr2R 9830370 9830381 5 80 0.5 9.0 4.8 0.9 93 chr2R 9830288 intron hebe - chr2R 9830334 intron hebe - chr2R 9830381 intron hebe - chr2R_5_9830001 chr2R_9830001 RAL-88 433 chr2R 9871042 9871071 chr2R 9871527 9871549 roo 8 482 2.5 5.0 3.8 1.7 507 chr2R 9871042 intron cbx - chr2R 9871296 intron cbx - chr2R 9871549 intron,5` UTR cbx -,CG18446 + chr2R_8_9870001 chr2R_9870001 RAL-88 434 chr2R 9902710 9902731 chr2R 9902781 9902807 5 73 7.0 6.5 6.8 0.6 97 chr2R 9902710 intron CG1441 - chr2R 9902758 intron CG1441 - chr2R 9902807 intron CG1441 - chr2R_5_9900001 chr2R_9900001 RAL-88 435 chr2R 9928418 9928444 chr2R 9928543 9928569 8 124 3.5 2.0 2.8 2.1 151 chr2R 9928418 intron Mef2 - chr2R 9928494 intron Mef2 - chr2R 9928569 intron Mef2 - chr2R_8_9925001 chr2R_9925001 RAL-88 436 chr2R 9935028 9935048 chr2R 9935110 9935130 6 82 1.0 1.0 1.0 3.0 102 chr2R 9935028 intron Mef2 - chr2R 9935079 intron Mef2 - chr2R 9935130 intron Mef2 - chr2R_6_9935001 chr2R_9935001 RAL-88 437 chr2R 9950301 9950324 chr2R 9950378 9950394 4 75 1.5 1.5 1.5 1.6 93 chr2R 9950301 intron Mef2 - chr2R 9950348 intron Mef2 - chr2R 9950394 intron Mef2 - chr2R_4_9950001 chr2R_9950001 RAL-88 438 chr2R 9966963 9966986 chr2R 9967064 9967087 6 101 1.5 2.5 2.0 2.0 124 chr2R 9966963 intergenic CG12133 + chr2R 9967025 intergenic CG12133 + chr2R 9967087 intergenic CG12133 + chr2R_6_9965001 chr2R_9965001 RAL-88 439 chr2R 9975917 9975939 chr2R 9976031 9976054 10 114 4.0 1.5 2.8 2.6 137 chr2R 9975917 intergenic not near genes chr2R 9975986 intergenic not near genes chr2R 9976054 intergenic not near genes chr2R_10_9975001 chr2R_9975001 RAL-88 440 chr2R 10017648 10017668 chr2R 10017727 10017746 5 78 3.0 1.5 2.2 1.6 98 chr2R 10017648 intron Pka-R2 - chr2R 10017697 intron Pka-R2 - chr2R 10017746 intron Pka-R2 - chr2R_5_10015001 chr2R_10015001 RAL-88 441 chr2R 10087765 10087768 chr2R 10087852 10087855 4 87 3.5 4.0 3.8 0.8 90 chr2R 10087765 intron CG2269 + chr2R 10087810 intron CG2269 + chr2R 10087855 intron CG2269 + chr2R_4_10085001 chr2R_10085001 RAL-88 442 chr2R 10318522 10318547 chr2R 10318608 10318633 10 84 1.5 3.0 2.2 3.1 111 chr2R 10318522 intron Ndg + chr2R 10318578 intron Ndg + chr2R 10318633 intron Ndg + chr2R_10_10315001 chr2R_10315001 RAL-88 443 chr2R 10356213 10356241 chr2R 10356312 10356340 5 97 0.5 2.5 1.5 2.0 127 chr2R 10356213 intron,3` UTR CG42732 -,CG42733 - chr2R 10356276 intron,3` UTR CG42732 -,CG42733 - chr2R 10356340 intron,exon CG42732 -,CG42733 - chr2R_5_10355001 chr2R_10355001 RAL-88 444 chr2R 10368988 10369011 chr2R 10369071 10369099 8 87 2.5 1.5 2.0 2.7 111 chr2R 10368988 intron CG42732 - chr2R 10369044 intron CG42732 - chr2R 10369099 intron CG42732 - chr2R_8_10365001 chr2R_10365001 RAL-88 445 chr2R 10454097 10454124 chr2R 10454174 10454201 6 77 3.5 3.5 3.5 1.3 104 chr2R 10454097 intron,intron Galphao +,Cyp49a1 - chr2R 10454149 intron,intron Galphao +,Cyp49a1 - chr2R 10454201 intron,intron Galphao +,Cyp49a1 - chr2R_6_10450001 chr2R_10450001 RAL-88 446 chr2R 10545444 10545466 chr2R 10545537 10545558 6 93 2.0 3.5 2.8 1.6 114 chr2R 10545444 intergenic not near genes chr2R 10545501 intergenic not near genes chr2R 10545558 intergenic not near genes chr2R_6_10545001 chr2R_10545001 RAL-88 447 chr2R 10562197 10562213 chr2R 10562282 10562300 4 87 1.5 1.5 1.5 1.6 103 chr2R 10562197 intron psq + chr2R 10562248 intron psq + chr2R 10562300 intron psq + chr2R_4_10560001 chr2R_10560001 RAL-88 448 chr2R 10671259 10671275 chr2R 10671336 10671352 6 77 5.0 0.0 2.5 1.7 93 chr2R 10671259 intergenic not near genes chr2R 10671306 intergenic not near genes chr2R 10671352 intergenic not near genes chr2R_6_10670001 chr2R_10670001 RAL-88 449 chr2R 10761555 10761589 chr2R 10761709 10761743 7 154 3.0 1.5 2.2 2.2 188 chr2R 10761555 intron,5` UTR CG33144 -,CR43605 + chr2R 10761649 intron,5` UTR CG33144 -,CR43605 + chr2R 10761743 intron CG33144 - chr2R_7_10760001 chr2R_10760001 RAL-88 450 chr2R 10770994 10771026 chr2R 10771075 10771107 6 81 0.5 2.0 1.2 2.7 113 chr2R 10770994 intron CG33144 - chr2R 10771050 intron CG33144 - chr2R 10771107 intron CG33144 - chr2R_6_10770001 chr2R_10770001 RAL-88 451 chr2R 10834247 10834260 chr2R 10834719 10834732 6 472 17.5 16.0 16.8 0.3 485 chr2R 10834247 intron CG12344 - chr2R 10834490 intron CG12344 - chr2R 10834732 intron CG12344 - chr2R_6_10830001 chr2R_10830001 RAL-88 452 chr2R 10937862 10937875 chr2R 10938037 10938054 11 177 3.5 4.5 4.0 2.2 192 chr2R 10937862 intergenic not near genes chr2R 10937958 intergenic Spn47C - chr2R 10938054 intergenic Spn47C - chr2R_11_10935001 chr2R_10935001 RAL-88 453 chr2R 10948024 10948054 chr2R 10955575 10955604 17.6 7 7550 2.5 1.5 2.0 2.3 7580 chr2R 10948024 intergenic not near genes chr2R 10951814 intergenic not near genes chr2R 10955604 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-88 454 chr2R 10989482 10989483 chr2R 10989542 10989560 4 73 0.5 2.0 1.2 1.8 78 chr2R 10989482 intron luna - chr2R 10989521 intron luna - chr2R 10989560 intron luna - chr2R_4_10985001 chr2R_10985001 RAL-88 455 chr2R 11009814 11009846 chr2R 11018987 11019020 roo 7 9173 2.0 4.5 3.2 1.7 9206 chr2R 11009814 intron luna - chr2R 11014417 intron luna - chr2R 11019020 intron luna - chr2R_7_11010001 chr2R_11010001 RAL-88 456 chr2R 11019877 11019908 chr2R 11024943 11024974 jockey 5 5065 1.5 5.0 3.2 1.2 5097 chr2R 11019877 intron luna - chr2R 11022426 intron luna - chr2R 11024974 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-88 457 chr2R 11071566 11071586 chr2R 11071671 11071687 5 104 5.0 0.5 2.8 1.3 121 chr2R 11071566 intron luna - chr2R 11071626 intron luna - chr2R 11071687 intron luna - chr2R_5_11070001 chr2R_11070001 RAL-88 458 chr2R 11091991 11092006 chr2R 11092070 11092075 5 77 1.5 4.0 2.8 1.3 84 chr2R 11091991 intron luna - chr2R 11092033 intron luna - chr2R 11092075 intron luna - chr2R_5_11090001 chr2R_11090001 RAL-88 459 chr2R 11129067 11129101 chr2R 11129156 11129186 6 87 2.0 2.0 2.0 2.0 119 chr2R 11129067 intergenic not near genes chr2R 11129126 intergenic not near genes chr2R 11129186 intergenic not near genes chr2R_6_11125001 chr2R_11125001 RAL-88 460 chr2R 11170820 11170855 chr2R 11170921 11170956 11 101 3.0 5.5 4.2 2.1 136 chr2R 11170820 intron,intron CG13229 -,shn + chr2R 11170888 intron,intron CG13229 -,shn + chr2R 11170956 intron,intron CG13229 -,shn + chr2R_11_11170001 chr2R_11170001 RAL-88 461 chr2R 11207812 11207843 chr2R 11208005 11208036 BS 4 193 5.0 2.0 3.5 0.9 224 chr2R 11207812 intron shn + chr2R 11207924 intron shn + chr2R 11208036 intron shn + chr2R_4_11205001 chr2R_11205001 RAL-88 462 chr2R 11265726 11265730 chr2R 11265808 11265812 4 82 5.0 0.0 2.5 1.1 86 chr2R 11265726 exon Cpr47Ee + chr2R 11265769 intron Cpr47Ee + chr2R 11265812 intron Cpr47Ee + chr2R_4_11265001 chr2R_11265001 RAL-88 463 chr2R 11297616 11297650 chr2R 11301937 11301971 flea 7 4316 3.0 3.0 3.0 1.8 4355 chr2R 11297616 intergenic CG42336 - chr2R 11299794 intergenic not near genes chr2R 11301971 5` UTR CG7741 + chr2R_7_11295001 chr2R_11295001 RAL-88 464 chr2R 11419872 11419897 chr2R 11419992 11420027 11 128 1.5 1.5 1.5 4.4 155 chr2R 11419872 intron Drip - chr2R 11419950 intron Drip - chr2R 11420027 intron Drip - chr2R_11_11415001 chr2R_11415001 RAL-88 465 chr2R 11472647 11472676 chr2R 11473844 11473873 pogo 9 1197 4.0 3.5 3.8 1.9 1226 chr2R 11472647 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473873 intergenic not near genes chr2R_9_11470001 chr2R_11470001 RAL-88 466 chr2R 11485134 11485145 chr2R 11485194 11485224 4 76 1.5 2.5 2.0 1.3 90 chr2R 11485134 intron inv + chr2R 11485179 intron inv + chr2R 11485224 intron inv + chr2R_4_11485001 chr2R_11485001 RAL-88 467 chr2R 11672685 11672705 chr2R 11676132 11676153 4 3448 16.0 7.0 11.5 0.3 3468 chr2R 11672685 intron,intron Roc2 -,Tret1-1 + chr2R 11674419 intron,exon Roc2 -,Tret1-1 + chr2R 11676153 intron,intron Roc2 -,Tret1-2 + chr2R_4_11670001 chr2R_11670001 RAL-88 468 chr2R 11677876 11677897 chr2R 11677952 11677975 7 77 1.0 1.0 1.0 3.5 99 chr2R 11677876 intron,exon Roc2 -,Tret1-2 + chr2R 11677926 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677975 intron,3` UTR Roc2 -,Tret1-2 + chr2R_7_11675001 chr2R_11675001 RAL-88 469 chr2R 12124836 12124857 chr2R 12124920 12124941 5 84 1.5 3.0 2.2 1.6 105 chr2R 12124836 intergenic not near genes chr2R 12124888 intergenic not near genes chr2R 12124941 intergenic not near genes chr2R_5_12120001 chr2R_12120001 RAL-88 470 chr2R 12187473 12187477 chr2R 12190089 12190095 9 2616 49.5 55.0 52.2 0.2 2622 chr2R 12187473 exon Cyp6g1 + chr2R 12188784 exon Cyp6g2 - chr2R 12190095 exon Cyp6g2 - chr2R_9_12185001 chr2R_12185001 RAL-88 471 chr2R 12187471 12187500 chr2R 12190098 12190124 23 2620 68.5 51.5 60.0 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_23_12185001 chr2R_12185001 RAL-88 472 chr2R 12334886 12334902 chr2R 12334963 12334977 4 77 3.0 5.0 4.0 0.8 91 chr2R 12334886 intergenic CG8490 + chr2R 12334932 intergenic CG8490 + chr2R 12334977 intergenic CG8490 + chr2R_4_12330001 chr2R_12330001 RAL-88 473 chr2R 12363381 12363417 chr2R 12363813 12363849 9 432 0.5 1.0 0.8 5.0 468 chr2R 12363381 intergenic CG30043 + chr2R 12363615 intergenic CG30043 + chr2R 12363849 intergenic not near genes chr2R_9_12360001 chr2R_12360001 RAL-88 474 chr2R 12492091 12492124 chr2R 12492185 12492216 7 93 2.0 0.0 1.0 3.5 125 chr2R 12492091 intron fdl - chr2R 12492154 intron fdl - chr2R 12492216 intron fdl - chr2R_7_12490001 chr2R_12490001 RAL-88 475 chr2R 12501690 12501725 chr2R 12503849 12503887 Rt1c 6 2160 2.0 6.0 4.0 1.2 2197 chr2R 12501690 intron fdl - chr2R 12502788 intron fdl - chr2R 12503887 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-88 476 chr2R 12540474 12540497 chr2R 12540557 12540559 6 79 3.0 1.0 2.0 2.0 85 chr2R 12540474 intron fra + chr2R 12540516 intron fra + chr2R 12540559 intron fra + chr2R_6_12540001 chr2R_12540001 RAL-88 477 chr2R 12773921 12773948 chr2R 12774004 12774018 5 80 5.0 4.5 4.8 0.9 97 chr2R 12773921 intergenic not near genes chr2R 12773970 intergenic not near genes chr2R 12774018 intergenic not near genes chr2R_5_12770001 chr2R_12770001 RAL-88 478 chr2R 12789298 12789324 chr2R 12797661 12797687 roo 5 8362 4.0 2.0 3.0 1.2 8389 chr2R 12789298 intron,3` UTR sca +,CR45137 - chr2R 12793492 intron,intron sca +,CR45137 - chr2R 12797687 intron,3` UTR sca +,CR45137 - chr2R_5_12790001 chr2R_12790001 RAL-88 479 chr2R 12819444 12819474 chr2R 12824516 12824547 jockey 12 5072 2.5 4.0 3.2 2.9 5103 chr2R 12819444 intergenic not near genes chr2R 12821996 intergenic not near genes chr2R 12824547 intergenic not near genes chr2R_12_12820001 chr2R_12820001 RAL-88 480 chr2R 13078759 13078780 chr2R 13078856 13078877 4 97 2.0 1.5 1.8 1.4 118 chr2R 13078759 intron Drl-2 - chr2R 13078818 intron Drl-2 - chr2R 13078877 intron Drl-2 - chr2R_4_13075001 chr2R_13075001 RAL-88 481 chr2R 13136842 13136868 chr2R 13141639 13141666 Doc 7 4796 3.0 3.5 3.2 1.7 4824 chr2R 13136842 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141666 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-88 482 chr2R 13167413 13167429 chr2R 13167495 13167511 5 82 1.0 1.5 1.2 2.3 98 chr2R 13167413 intron GLaz - chr2R 13167462 intron GLaz - chr2R 13167511 intron GLaz - chr2R_5_13165001 chr2R_13165001 RAL-88 483 chr2R 13364714 13364732 chr2R 13364800 13364815 7 86 2.0 3.5 2.8 1.8 101 chr2R 13364714 intergenic not near genes chr2R 13364764 intergenic not near genes chr2R 13364815 intergenic not near genes chr2R_7_13360001 chr2R_13360001 RAL-88 484 chr2R 13431491 13431513 chr2R 13431570 13431592 5 79 1.0 1.0 1.0 2.5 101 chr2R 13431491 intron CG42321 - chr2R 13431542 intron CG42321 - chr2R 13431592 intron CG42321 - chr2R_5_13430001 chr2R_13430001 RAL-88 485 chr2R 13439110 13439228 chr2R 13439225 13439304 4 111 0.0 0.0 0.0 4.0 194 chr2R 13439110 intergenic CG42321 -,cnn - chr2R 13439207 intergenic cnn -,CG42321 - chr2R 13439304 intergenic cnn -,CG42321 - chr2R_4_13435001 chr2R_13435001 RAL-88 486 chr2R 13446697 13446705 chr2R 13446777 13446786 4 81 0.5 0.0 0.2 3.3 89 chr2R 13446697 intron cnn - chr2R 13446742 intron cnn - chr2R 13446786 intron cnn - chr2R_4_13445001 chr2R_13445001 RAL-88 487 chr2R 13489268 13489291 chr2R 13489358 13489381 9 89 0.5 3.5 2.0 3.0 113 chr2R 13489268 intron bbc - chr2R 13489324 intron bbc - chr2R 13489381 intron bbc - chr2R_9_13485001 chr2R_13485001 RAL-88 488 chr2R 13554757 13554774 chr2R 13554842 13554858 4 85 0.0 3.0 1.5 1.6 101 chr2R 13554757 intron Roe1 + chr2R 13554808 intron Roe1 + chr2R 13554858 intron Roe1 + chr2R_4_13550001 chr2R_13550001 RAL-88 489 chr2R 13566266 13566286 chr2R 13566346 13566366 6 80 1.5 0.0 0.8 3.3 100 chr2R 13566266 intergenic not near genes chr2R 13566316 intergenic not near genes chr2R 13566366 intergenic not near genes chr2R_6_13565001 chr2R_13565001 RAL-88 490 chr2R 13574399 13574429 chr2R 13574480 13574510 10 80 2.5 2.0 2.2 3.1 111 chr2R 13574399 intergenic CG42808 - chr2R 13574454 intergenic CG42808 -,CR44365 + chr2R 13574510 intergenic CG42808 -,CR44365 + chr2R_10_13570001 chr2R_13570001 RAL-88 491 chr2R 13580500 13580531 chr2R 13580847 13580881 jockey 7 349 1.5 3.0 2.2 2.2 381 chr2R 13580500 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580881 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_7_13580001 chr2R_13580001 RAL-88 492 chr2R 13648489 13648506 chr2R 13648675 13648692 4 186 3.5 2.0 2.8 1.1 203 chr2R 13648489 intron fas + chr2R 13648590 intron fas + chr2R 13648692 intron fas + chr2R_4_13645001 chr2R_13645001 RAL-88 493 chr2R 13714877 13714913 chr2R 13715057 13715092 5 180 0.5 0.5 0.5 3.3 215 chr2R 13714877 intron fas + chr2R 13714984 intron fas + chr2R 13715092 intron fas + chr2R_5_13710001 chr2R_13710001 RAL-88 494 chr2R 13768991 13769010 chr2R 13769087 13769108 4 95 3.5 5.0 4.2 0.8 117 chr2R 13768991 intergenic not near genes chr2R 13769050 intergenic not near genes chr2R 13769108 intergenic not near genes chr2R_4_13765001 chr2R_13765001 RAL-88 495 chr2R 13905603 13905626 chr2R 13907585 13907590 Rt1a 5 1978 3.0 4.5 3.8 1.0 1987 chr2R 13905603 intron shot - chr2R 13906596 intron shot - chr2R 13907590 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-88 496 chr2R 13915828 13915846 chr2R 13915914 13915935 6 88 3.0 8.0 5.5 0.9 107 chr2R 13915828 intron shot - chr2R 13915882 intron shot - chr2R 13915935 intron shot - chr2R_6_13915001 chr2R_13915001 RAL-88 497 chr2R 13925870 13925889 chr2R 13926024 13926039 6 153 3.0 1.5 2.2 1.9 169 chr2R 13925870 intron shot - chr2R 13925954 intron shot - chr2R 13926039 intron shot - chr2R_6_13925001 chr2R_13925001 RAL-88 498 chr2R 14115768 14115802 chr2R 14115847 14115882 5 79 1.5 2.0 1.8 1.8 114 chr2R 14115768 intron Prosap - chr2R 14115825 intron Prosap - chr2R 14115882 intron Prosap - chr2R_5_14115001 chr2R_14115001 RAL-88 499 chr2R 14130056 14130079 chr2R 14130222 14130245 8 166 2.5 1.0 1.8 2.9 189 chr2R 14130056 intron Prosap - chr2R 14130150 intron Prosap - chr2R 14130245 intron Prosap - chr2R_8_14130001 chr2R_14130001 RAL-88 500 chr2R 14132111 14132122 chr2R 14132198 14132198 5 86 5.0 1.5 3.2 1.2 87 chr2R 14132111 intron Prosap - chr2R 14132154 intron Prosap - chr2R 14132198 intron Prosap - chr2R_5_14130001 chr2R_14130001 RAL-88 501 chr2R 14389067 14389095 chr2R 14389165 14389193 9 96 3.0 3.0 3.0 2.2 126 chr2R 14389067 intergenic not near genes chr2R 14389130 intergenic not near genes chr2R 14389193 intergenic not near genes chr2R_9_14385001 chr2R_14385001 RAL-88 502 chr2R 14393865 14393898 chr2R 14393949 14393982 13 81 3.5 0.5 2.0 4.3 117 chr2R 14393865 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14393982 intergenic not near genes chr2R_13_14390001 chr2R_14390001 RAL-88 503 chr2R 14467307 14467327 chr2R 14476464 14476485 roo 8 9158 2.0 2.0 2.0 2.7 9178 chr2R 14467307 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_8_14470001 chr2R_14470001 RAL-88 504 chr2R 14497290 14497311 chr2R 14497369 14497389 6 79 2.0 1.0 1.5 2.4 99 chr2R 14497290 3` UTR L + chr2R 14497340 intergenic Cpsf160 -,L + chr2R 14497389 3` UTR Cpsf160 - chr2R_6_14495001 chr2R_14495001 RAL-88 505 chr2R 14704714 14704747 chr2R 14705929 14705962 9 1215 1.5 1.0 1.2 4.1 1248 chr2R 14704714 intron mspo - chr2R 14705338 intron mspo - chr2R 14705962 intron mspo - chr2R_9_14705001 chr2R_14705001 RAL-88 506 chr2R 14797601 14797632 chr2R 14797696 14797727 7 94 0.0 0.0 0.0 7.0 126 chr2R 14797601 intron kn - chr2R 14797664 intron kn - chr2R 14797727 intron kn - chr2R_7_14795001 chr2R_14795001 RAL-88 507 chr2R 14820904 14820931 chr2R 14820981 14820994 8 75 4.5 1.5 3.0 2.0 90 chr2R 14820904 intergenic not near genes chr2R 14820949 intergenic not near genes chr2R 14820994 intergenic not near genes chr2R_8_14820001 chr2R_14820001 RAL-88 508 chr2R 14829253 14829265 chr2R 14829342 14829354 5 88 6.5 3.0 4.8 0.9 101 chr2R 14829253 intergenic not near genes chr2R 14829304 intergenic not near genes chr2R 14829354 intergenic not near genes chr2R_5_14825001 chr2R_14825001 RAL-88 509 chr2R 14850065 14850085 chr2R 14850171 14850191 7 106 22.5 19.5 21.0 0.3 126 chr2R 14850065 exon SMC2 - chr2R 14850128 intron SMC2 - chr2R 14850191 exon SMC2 - chr2R_7_14850001 chr2R_14850001 RAL-88 510 chr2R 14855030 14855064 chr2R 14855121 14855156 11 91 2.5 2.0 2.2 3.4 126 chr2R 14855030 5` UTR Ciao1 - chr2R 14855093 intergenic Ciao1 -,HPS1 + chr2R 14855156 intergenic Ciao1 -,HPS1 + chr2R_11_14855001 chr2R_14855001 RAL-88 511 chr2R 14871669 14871697 chr2R 14872116 14872144 12 447 6.0 3.5 4.8 2.1 475 chr2R 14871669 5` UTR Cyp6a22 + chr2R 14871906 exon Cyp6a22 + chr2R 14872144 exon Cyp6a22 + chr2R_12_14870001 chr2R_14870001 RAL-88 512 chr2R 14878185 14878194 chr2R 14878650 14878666 7 466 28.0 21.5 24.8 0.3 481 chr2R 14878185 exon Cyp6a19 + chr2R 14878426 exon Cyp6a19 + chr2R 14878666 exon Cyp6a19 + chr2R_7_14875001 chr2R_14875001 RAL-88 513 chr2R 14878184 14878216 chr2R 14878668 14878682 5 479 29.0 23.0 26.0 0.2 498 chr2R 14878184 exon Cyp6a19 + chr2R 14878433 exon Cyp6a19 + chr2R 14878682 exon Cyp6a19 + chr2R_5_14875001 chr2R_14875001 RAL-88 514 chr2R 14911702 14911725 chr2R 14911825 14911847 11 123 3.0 1.5 2.2 3.4 145 chr2R 14911702 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911847 intron CG10249 - chr2R_11_14910001 chr2R_14910001 RAL-88 515 chr2R 14968202 14968229 chr2R 14968295 14968315 5 91 3.0 2.5 2.8 1.3 113 chr2R 14968202 intron ckn + chr2R 14968258 intron ckn + chr2R 14968315 intron ckn + chr2R_5_14965001 chr2R_14965001 RAL-88 516 chr2R 15004724 15004737 chr2R 15005052 15005066 jockey 7 329 6.0 0.0 3.0 1.8 342 chr2R 15004724 intergenic not near genes chr2R 15004895 intergenic not near genes chr2R 15005066 intergenic not near genes chr2R_7_15000001 chr2R_15000001 RAL-88 517 chr2R 15015457 15015486 chr2R 15022881 15022910 mdg1 10 7424 2.0 4.0 3.0 2.5 7453 chr2R 15015457 intron hbs + chr2R 15019184 intron hbs + chr2R 15022910 intron hbs + chr2R_10_15015001 chr2R_15015001 RAL-88 518 chr2R 15084982 15084993 chr2R 15092031 15092041 297 4 7048 2.5 3.0 2.8 1.1 7059 chr2R 15084982 intergenic not near genes chr2R 15088512 intergenic not near genes chr2R 15092041 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-88 519 chr2R 15109338 15109361 chr2R 15109430 15109453 4 92 4.5 0.5 2.5 1.1 115 chr2R 15109338 intergenic not near genes chr2R 15109396 intergenic not near genes chr2R 15109453 intergenic not near genes chr2R_4_15105001 chr2R_15105001 RAL-88 520 chr2R 15119317 15119348 chr2R 15127798 15127828 Tirant 4 8480 4.0 2.5 3.2 1.0 8511 chr2R 15119317 intron chn + chr2R 15123572 intron chn + chr2R 15127828 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-88 521 chr2R 15330209 15330235 chr2R 15330343 15330369 8 134 0.5 1.5 1.0 4.0 160 chr2R 15330209 intergenic CR44371 - chr2R 15330289 intergenic CR44371 - chr2R 15330369 intergenic CR44371 - chr2R_8_15330001 chr2R_15330001 RAL-88 522 chr2R 15679120 15679130 chr2R 15679204 15679214 4 84 0.0 1.0 0.5 2.7 94 chr2R 15679120 intergenic CG8207 -,Vha14-1 - chr2R 15679167 intergenic CG8207 -,Vha14-1 - chr2R 15679214 intergenic Vha14-1 -,CG8207 - chr2R_4_15675001 chr2R_15675001 RAL-88 523 chr2R 15700250 15700267 chr2R 15700365 15700382 5 114 3.5 3.0 3.2 1.2 132 chr2R 15700250 intron,5` UTR CG30080 -,CG42662 - chr2R 15700316 intron,5` UTR CG30080 -,CG42662 - chr2R 15700382 intron,5` UTR CG30080 -,CG42662 - chr2R_5_15700001 chr2R_15700001 RAL-88 524 chr2R 16245418 16245428 chr2R 16245511 16245522 7 93 2.5 1.0 1.8 2.5 104 chr2R 16245418 intron CngA - chr2R 16245470 intron CngA - chr2R 16245522 intron CngA - chr2R_7_16245001 chr2R_16245001 RAL-88 525 chr2R 16271483 16271511 chr2R 16279099 16279127 10 7616 19.5 21.5 20.5 0.5 7644 chr2R 16271483 exon Khc - chr2R 16275305 exon CG33017 + chr2R 16279127 intergenic not near genes chr2R_10_16275001 chr2R_16275001 RAL-88 526 chr2R 16426190 16426203 chr2R 16426273 16426287 5 83 0.0 2.0 1.0 2.5 97 chr2R 16426190 intron Sema-2b + chr2R 16426238 intron Sema-2b + chr2R 16426287 intron Sema-2b + chr2R_5_16425001 chr2R_16425001 RAL-88 527 chr2R 16571883 16571903 chr2R 16571978 16571998 6 95 0.5 0.5 0.5 4.0 115 chr2R 16571883 intergenic CG4927 + chr2R 16571940 intergenic CG4927 + chr2R 16571998 intergenic CG4927 + chr2R_6_16570001 chr2R_16570001 RAL-88 528 chr2R 16617060 16617086 chr2R 16617139 16617165 10 79 4.0 2.5 3.2 2.4 105 chr2R 16617060 intron CG5065 + chr2R 16617112 intron CG5065 + chr2R 16617165 intron CG5065 + chr2R_10_16615001 chr2R_16615001 RAL-88 529 chr2R 16910232 16910245 chr2R 16910331 16910344 7 99 3.5 2.5 3.0 1.8 112 chr2R 16910232 intergenic not near genes chr2R 16910288 intergenic not near genes chr2R 16910344 intergenic not near genes chr2R_7_16910001 chr2R_16910001 RAL-88 530 chr2R 16965917 16965939 chr2R 16966122 16966146 6 207 2.5 3.0 2.8 1.6 229 chr2R 16965917 intergenic not near genes chr2R 16966032 intergenic not near genes chr2R 16966146 intergenic not near genes chr2R_6_16965001 chr2R_16965001 RAL-88 531 chr2R 16993530 16993559 chr2R 16993617 16993648 10 88 3.5 2.5 3.0 2.5 118 chr2R 16993530 intron Cbp53E + chr2R 16993589 intron Cbp53E + chr2R 16993648 intron Cbp53E + chr2R_10_16990001 chr2R_16990001 RAL-88 532 chr2R 17099982 17100012 chr2R 17100068 17100078 16 81 1.5 1.5 1.5 6.4 96 chr2R 17099982 intergenic CG30456 + chr2R 17100030 intergenic CG30456 + chr2R 17100078 intergenic CG30456 + chr2R_16_17100001 chr2R_17100001 RAL-88 533 chr2R 17147244 17147268 chr2R 17152273 17152299 jockey 5 5031 3.0 3.5 3.2 1.2 5055 chr2R 17147244 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152299 intergenic not near genes chr2R_5_17145001 chr2R_17145001 RAL-88 534 chr2R 17161178 17161205 chr2R 17161262 17161290 7 82 1.5 2.0 1.8 2.5 112 chr2R 17161178 intergenic CG30457 - chr2R 17161234 intergenic CG30457 - chr2R 17161290 intergenic CG30457 - chr2R_7_17160001 chr2R_17160001 RAL-88 535 chr2R 17236507 17236541 chr2R 17241711 17241731 copia 14 5202 1.0 2.0 1.5 5.6 5224 chr2R 17236507 intron mbl + chr2R 17239119 intron mbl + chr2R 17241731 intron mbl + chr2R_14_17235001 chr2R_17235001 RAL-88 536 chr2R 17381585 17381613 chr2R 17381673 17381701 5 88 3.0 1.5 2.2 1.6 116 chr2R 17381585 intergenic not near genes chr2R 17381643 intergenic not near genes chr2R 17381701 intergenic not near genes chr2R_5_17380001 chr2R_17380001 RAL-88 537 chr2R 17459009 17459031 chr2R 17459094 17459116 4 85 2.0 2.5 2.2 1.2 107 chr2R 17459009 intron CG14478 + chr2R 17459062 intron CG14478 + chr2R 17459116 intron CG14478 + chr2R_4_17455001 chr2R_17455001 RAL-88 538 chr2R 17470236 17470262 chr2R 17470431 17470457 9 194 2.0 2.0 2.0 3.0 221 chr2R 17470236 intron qkr54B + chr2R 17470346 intron qkr54B + chr2R 17470457 intron qkr54B + chr2R_9_17470001 chr2R_17470001 RAL-88 539 chr2R 17485922 17485931 chr2R 17490692 17490701 F-element 4 4770 1.0 2.5 1.8 1.4 4779 chr2R 17485922 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488312 intron NT5E-2 + chr2R 17490701 intron NT5E-2 + chr2R_4_17485001 chr2R_17485001 RAL-88 540 chr2R 17561602 17561615 chr2R 17561681 17561694 5 79 5.0 4.0 4.5 0.9 92 chr2R 17561602 exon Klp54D + chr2R 17561648 intron Klp54D + chr2R 17561694 intron Klp54D + chr2R_5_17560001 chr2R_17560001 RAL-88 541 chr2R 17640116 17640136 chr2R 17640343 17640369 8 230 2.0 3.0 2.5 2.3 253 chr2R 17640116 intergenic not near genes chr2R 17640242 intergenic not near genes chr2R 17640369 intergenic not near genes chr2R_8_17640001 chr2R_17640001 RAL-88 542 chr2R 17655206 17655233 chr2R 17655281 17655298 9 70 3.0 4.0 3.5 2.0 92 chr2R 17655206 intron CCHa1-R - chr2R 17655252 intron CCHa1-R - chr2R 17655298 intron CCHa1-R - chr2R_9_17655001 chr2R_17655001 RAL-88 543 chr2R 17669795 17669803 chr2R 17669887 17669897 4 94 5.5 0.5 3.0 1.0 102 chr2R 17669795 exon CG30108 + chr2R 17669846 3` UTR CG30108 + chr2R 17669897 3` UTR CG30108 + chr2R_4_17665001 chr2R_17665001 RAL-88 544 chr2R 17760680 17760700 chr2R 17760804 17760827 4 126 1.0 2.5 1.8 1.4 147 chr2R 17760680 intergenic HLH54F +,CG5009 + chr2R 17760754 intergenic CG5009 +,HLH54F + chr2R 17760827 intergenic CG5009 +,HLH54F + chr2R_4_17760001 chr2R_17760001 RAL-88 545 chr2R 17784027 17784053 chr2R 17784268 17784294 pogo 13 239 3.5 2.5 3.0 3.2 267 chr2R 17784027 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784294 intergenic mir-31a - chr2R_13_17780001 chr2R_17780001 RAL-88 546 chr2R 17918169 17918189 chr2R 17918246 17918262 6 74 2.5 2.0 2.2 1.9 93 chr2R 17918169 intron Elk + chr2R 17918216 intron Elk + chr2R 17918262 intron Elk + chr2R_6_17915001 chr2R_17915001 RAL-88 547 chr2R 18229524 18229554 chr2R 18229616 18229648 6 94 3.0 4.0 3.5 1.3 124 chr2R 18229524 3` UTR CR45311 - chr2R 18229586 3` UTR CR45311 - chr2R 18229648 3` UTR CR45311 - chr2R_6_18225001 chr2R_18225001 RAL-88 548 chr2R 18308282 18308319 chr2R 18308388 18308425 13 104 3.5 1.0 2.2 4.1 143 chr2R 18308282 intron sbb - chr2R 18308354 intron sbb - chr2R 18308425 intron sbb - chr2R_13_18305001 chr2R_18305001 RAL-88 549 chr2R 18358388 18358422 chr2R 18372600 18372634 roo 10 14212 2.5 3.0 2.8 2.6 14246 chr2R 18358388 intergenic not near genes chr2R 18365511 intergenic not near genes chr2R 18372634 intergenic not near genes chr2R_10_18365001 chr2R_18365001 RAL-88 550 chr2R 18487847 18487854 chr2R 18495317 18495324 blood 4 7469 0.5 4.0 2.2 1.2 7477 chr2R 18487847 intron CG30116 - chr2R 18491586 intron CG30116 - chr2R 18495324 intron CG30116 - chr2R_4_18490001 chr2R_18490001 RAL-88 551 chr2R 18528197 18528222 chr2R 18528280 18528307 6 80 2.5 3.5 3.0 1.5 110 chr2R 18528197 intron CG10924 + chr2R 18528252 intron CG10924 + chr2R 18528307 intron CG10924 + chr2R_6_18525001 chr2R_18525001 RAL-88 552 chr2R 18575813 18575829 chr2R 18581983 18582016 3S18 6 6182 1.0 4.0 2.5 1.7 6203 chr2R 18575813 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582016 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-88 553 chr2R 18590867 18590900 chr2R 18600019 18600052 roo 5 9149 4.5 2.0 3.2 1.2 9185 chr2R 18590867 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-88 554 chr2R 18608634 18608647 chr2R 18608709 18608723 9 75 5.5 3.5 4.5 1.6 89 chr2R 18608634 intron GEFmeso - chr2R 18608678 intron GEFmeso - chr2R 18608723 intron GEFmeso - chr2R_9_18605001 chr2R_18605001 RAL-88 555 chr2R 18646411 18646429 chr2R 18646556 18646574 6 145 2.0 3.0 2.5 1.7 163 chr2R 18646411 intron SP2637 - chr2R 18646492 intron SP2637 - chr2R 18646574 intron SP2637 - chr2R_6_18645001 chr2R_18645001 RAL-88 556 chr2R 18692905 18692915 chr2R 18692987 18693002 4 86 3.5 1.0 2.2 1.2 97 chr2R 18692905 intron Sik3 + chr2R 18692954 intron Sik3 + chr2R 18693002 intron Sik3 + chr2R_4_18690001 chr2R_18690001 RAL-88 557 chr2R 18726888 18727097 chr2R 18726971 18727270 24 108 5.5 2.0 3.8 5.0 382 chr2R 18726888 intron Hs3st-A + chr2R 18727079 intron Hs3st-A + chr2R 18727270 intron Hs3st-A + chr2R_24_18725001 chr2R_18725001 RAL-88 558 chr2R 18819057 18819067 chr2R 18819127 18819135 5 73 0.0 0.0 0.0 5.0 78 chr2R 18819057 intergenic Phb2 + chr2R 18819096 intergenic Phb2 + chr2R 18819135 intergenic Phb2 + chr2R_5_18815001 chr2R_18815001 RAL-88 559 chr2R 18871648 18871680 chr2R 18871733 18871763 6 85 3.5 0.0 1.8 2.1 115 chr2R 18871648 intergenic not near genes chr2R 18871706 intergenic not near genes chr2R 18871763 intergenic not near genes chr2R_6_18870001 chr2R_18870001 RAL-88 560 chr2R 18876701 18876731 chr2R 18876792 18876796 11 87 4.0 3.5 3.8 2.3 95 chr2R 18876701 intergenic not near genes chr2R 18876748 intergenic not near genes chr2R 18876796 intergenic not near genes chr2R_11_18875001 chr2R_18875001 RAL-88 561 chr2R 18964920 18964944 chr2R 18964996 18965020 6 76 2.5 2.0 2.2 1.9 100 chr2R 18964920 intergenic not near genes chr2R 18964970 intergenic not near genes chr2R 18965020 intergenic not near genes chr2R_6_18960001 chr2R_18960001 RAL-88 562 chr2R 19061006 19061041 chr2R 19061095 19061130 6 86 3.5 2.5 3.0 1.5 124 chr2R 19061006 3` UTR CG15109 + chr2R 19061068 intergenic CG15109 + chr2R 19061130 intergenic CG15109 + chr2R_6_19060001 chr2R_19060001 RAL-88 563 chr2R 19066878 19066882 chr2R 19066957 19066961 5 79 0.5 4.0 2.2 1.6 83 chr2R 19066878 intergenic 5-HT1A + chr2R 19066920 intergenic 5-HT1A + chr2R 19066961 intergenic 5-HT1A + chr2R_5_19065001 chr2R_19065001 RAL-88 564 chr2R 19067724 19067750 chr2R 19067800 19067826 5 76 1.0 0.0 0.5 3.3 102 chr2R 19067724 intron 5-HT1A + chr2R 19067775 intron 5-HT1A + chr2R 19067826 intron 5-HT1A + chr2R_5_19065001 chr2R_19065001 RAL-88 565 chr2R 19116821 19116847 chr2R 19116917 19116943 5 96 1.0 2.0 1.5 2.0 122 chr2R 19116821 intron 5-HT1A + chr2R 19116882 intron 5-HT1A + chr2R 19116943 intron 5-HT1A + chr2R_5_19115001 chr2R_19115001 RAL-88 566 chr2R 19168739 19168754 chr2R 19168819 19168834 5 81 2.5 1.0 1.8 1.8 95 chr2R 19168739 intron CG10737 + chr2R 19168786 intron CG10737 + chr2R 19168834 intron CG10737 + chr2R_5_19165001 chr2R_19165001 RAL-88 567 chr2R 19300974 19300993 chr2R 19301057 19301076 9 82 2.0 3.0 2.5 2.6 102 chr2R 19300974 intron Tab2 + chr2R 19301025 intron Tab2 + chr2R 19301076 intron Tab2 + chr2R_9_19300001 chr2R_19300001 RAL-88 568 chr2R 19776597 19776630 chr2R 19779918 19779953 jockey 7 3323 2.0 1.5 1.8 2.5 3356 chr2R 19776597 intergenic not near genes chr2R 19778275 intergenic not near genes chr2R 19779953 intergenic not near genes chr2R_7_19775001 chr2R_19775001 RAL-88 569 chr2R 19957429 19957463 chr2R 19962631 19962665 copia 13 5201 1.5 2.0 1.8 4.6 5236 chr2R 19957429 intergenic CG44623 + chr2R 19960047 intergenic not near genes chr2R 19962665 intergenic not near genes chr2R_13_19960001 chr2R_19960001 RAL-88 570 chr2R 20069242 20069276 chr2R 20071872 20071906 opus 7 2629 1.5 2.0 1.8 2.5 2664 chr2R 20069242 intergenic not near genes chr2R 20070574 intergenic not near genes chr2R 20071906 intergenic not near genes chr2R_7_20070001 chr2R_20070001 RAL-88 571 chr2R 20080601 20080623 chr2R 20080678 20080700 5 77 0.0 2.0 1.0 2.5 99 chr2R 20080601 intergenic not near genes chr2R 20080650 intergenic not near genes chr2R 20080700 intergenic not near genes chr2R_5_20080001 chr2R_20080001 RAL-88 572 chr2R 20118875 20118885 chr2R 20118963 20118973 5 87 4.5 3.0 3.8 1.0 98 chr2R 20118875 intergenic not near genes chr2R 20118924 intergenic not near genes chr2R 20118973 intergenic not near genes chr2R_5_20115001 chr2R_20115001 RAL-88 573 chr2R 20162681 20162709 chr2R 20162798 20162826 11 115 3.5 2.5 3.0 2.8 145 chr2R 20162681 intergenic not near genes chr2R 20162754 intergenic not near genes chr2R 20162826 intergenic not near genes chr2R_11_20160001 chr2R_20160001 RAL-88 574 chr2R 20197766 20197803 chr2R 20198691 20198729 11 930 17.0 9.5 13.2 0.8 963 chr2R 20197766 intergenic not near genes chr2R 20198248 intergenic not near genes chr2R 20198729 intergenic not near genes chr2R_11_20195001 chr2R_20195001 RAL-88 575 chr2R 20395022 20395059 chr2R 20395193 20395235 5 171 2.0 0.0 1.0 2.5 213 chr2R 20395022 intergenic not near genes chr2R 20395128 intergenic not near genes chr2R 20395235 intergenic not near genes chr2R_5_20395001 chr2R_20395001 RAL-88 576 chr2R 20601721 20601738 chr2R 20601805 20601823 6 84 1.0 3.5 2.2 1.9 102 chr2R 20601721 intron bl + chr2R 20601772 intron bl + chr2R 20601823 intron bl + chr2R_6_20600001 chr2R_20600001 RAL-88 577 chr2R 20690773 20690787 chr2R 20690847 20690861 5 74 2.5 4.0 3.2 1.2 88 chr2R 20690773 intergenic not near genes chr2R 20690817 intergenic not near genes chr2R 20690861 intergenic not near genes chr2R_5_20690001 chr2R_20690001 RAL-88 578 chr2R 20739446 20739471 chr2R 20744213 20744239 F-element 4 4768 2.0 2.0 2.0 1.3 4793 chr2R 20739446 intron dpr + chr2R 20741842 intron dpr + chr2R 20744239 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-88 579 chr2R 20783311 20783333 chr2R 20788083 20788105 F-element 7 4772 1.0 3.5 2.2 2.2 4794 chr2R 20783311 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788105 intergenic CG43666 - chr2R_7_20785001 chr2R_20785001 RAL-88 580 chr2R 20863122 20863140 chr2R 20863205 20863226 7 84 2.0 1.5 1.8 2.5 104 chr2R 20863122 intergenic not near genes chr2R 20863174 intergenic not near genes chr2R 20863226 intergenic not near genes chr2R_7_20860001 chr2R_20860001 RAL-88 581 chr2R 20889564 20889566 chr2R 20889702 20889704 4 138 0.0 3.0 1.5 1.6 140 chr2R 20889564 intron otp - chr2R 20889634 intron otp - chr2R 20889704 intron otp - chr2R_4_20885001 chr2R_20885001 RAL-88 582 chr2R 20962906 20962939 chr2R 20963004 20963037 8 98 1.0 2.5 1.8 2.9 131 chr2R 20962906 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963037 intergenic not near genes chr2R_8_20960001 chr2R_20960001 RAL-88 583 chr2R 21079326 21079344 chr2R 21079402 21079420 8 75 4.0 2.0 3.0 2.0 94 chr2R 21079326 intron Treh + chr2R 21079373 intron Treh + chr2R 21079420 intron Treh + chr2R_8_21075001 chr2R_21075001 RAL-88 584 chr2R 21083176 21083192 chr2R 21083259 21083278 7 84 1.5 3.5 2.5 2.0 102 chr2R 21083176 intron Treh + chr2R 21083227 intron Treh + chr2R 21083278 intron Treh + chr2R_7_21080001 chr2R_21080001 RAL-88 585 chr2R 21110793 21110822 chr2R 21110885 21110915 7 91 2.5 2.5 2.5 2.0 122 chr2R 21110793 intron ktub + chr2R 21110854 intron ktub + chr2R 21110915 intron ktub + chr2R_7_21110001 chr2R_21110001 RAL-88 586 chr2R 21151115 21151146 chr2R 21153748 21153779 opus 5 2633 2.0 2.5 2.2 1.6 2664 chr2R 21151115 intron CG30389 - chr2R 21152447 intron CG30389 - chr2R 21153779 intron CG30389 - chr2R_5_21150001 chr2R_21150001 RAL-88 587 chr2R 21199375 21199400 chr2R 21201502 21201524 8 2124 14.0 23.0 18.5 0.4 2149 chr2R 21199375 3` UTR Lapsyn + chr2R 21200450 intergenic CG44245 +,Glycogenin + chr2R 21201524 intron,intron CG44245 +,Glycogenin + chr2R_8_21200001 chr2R_21200001 RAL-88 588 chr2R 21258490 21258496 chr2R 21258568 21258574 5 78 0.0 6.0 3.0 1.2 84 chr2R 21258490 intron Rgk3 + chr2R 21258532 intron Rgk3 + chr2R 21258574 intron Rgk3 + chr2R_5_21255001 chr2R_21255001 RAL-88 589 chr2R 21408370 21408408 chr2R 21408462 21408500 7 92 1.0 0.0 0.5 4.7 130 chr2R 21408370 intron Sdc - chr2R 21408435 intron Sdc - chr2R 21408500 intron Sdc - chr2R_7_21405001 chr2R_21405001 RAL-88 590 chr2R 21481214 21481237 chr2R 21481364 21481388 4 151 2.0 1.5 1.8 1.4 174 chr2R 21481214 intergenic Sdc - chr2R 21481301 intergenic Sdc - chr2R 21481388 intergenic Sdc - chr2R_4_21480001 chr2R_21480001 RAL-88 591 chr2R 21534109 21534141 chr2R 21534196 21534228 15 84 0.5 2.0 1.2 6.8 119 chr2R 21534109 intron Egfr + chr2R 21534168 intron Egfr + chr2R 21534228 intron Egfr + chr2R_15_21530001 chr2R_21530001 RAL-88 592 chr2R 21592845 21592857 chr2R 21592927 21592938 5 82 4.0 5.0 4.5 0.9 93 chr2R 21592845 intergenic not near genes chr2R 21592892 intergenic not near genes chr2R 21592938 intergenic not near genes chr2R_5_21590001 chr2R_21590001 RAL-88 593 chr2R 21605921 21605944 chr2R 21606005 21606028 5 84 1.5 2.5 2.0 1.7 107 chr2R 21605921 3` UTR CG10433 - chr2R 21605974 3` UTR CG10433 - chr2R 21606028 3` UTR CG10433 - chr2R_5_21605001 chr2R_21605001 RAL-88 594 chr2R 21699050 21699068 chr2R 21699129 21699147 4 79 2.5 3.5 3.0 1.0 97 chr2R 21699050 intron HmgZ - chr2R 21699098 intron HmgZ - chr2R 21699147 intron HmgZ - chr2R_4_21695001 chr2R_21695001 RAL-88 595 chr2R 21699072 21699077 chr2R 21699122 21699156 4 66 2.0 3.0 2.5 1.1 84 chr2R 21699072 intron HmgZ - chr2R 21699114 intron HmgZ - chr2R 21699156 intron HmgZ - chr2R_4_21695001 chr2R_21695001 RAL-88 596 chr2R 21700170 21700185 chr2R 21700241 21700271 6 83 3.5 3.5 3.5 1.3 101 chr2R 21700170 intron HmgZ - chr2R 21700220 intron HmgZ - chr2R 21700271 intron HmgZ - chr2R_6_21700001 chr2R_21700001 RAL-88 597 chr2R 21738279 21738310 chr2R 21747439 21747454 roo 9 9153 4.0 4.5 4.2 1.7 9175 chr2R 21738279 intergenic not near genes chr2R 21742866 intergenic not near genes chr2R 21747454 intergenic not near genes chr2R_9_21740001 chr2R_21740001 RAL-88 598 chr2R 21753084 21753117 chr2R 21753569 21753602 roo 6 485 3.5 3.0 3.2 1.4 518 chr2R 21753084 intergenic not near genes chr2R 21753343 intergenic not near genes chr2R 21753602 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-88 599 chr2R 21870960 21870972 chr2R 21871037 21871051 4 78 0.5 3.0 1.8 1.4 91 chr2R 21870960 intergenic not near genes chr2R 21871006 intergenic not near genes chr2R 21871051 intergenic not near genes chr2R_4_21870001 chr2R_21870001 RAL-88 600 chr2R 21894904 21894915 chr2R 21894963 21894991 5 71 2.5 2.5 2.5 1.4 87 chr2R 21894904 intron Fili + chr2R 21894948 intron Fili + chr2R 21894991 intron Fili + chr2R_5_21890001 chr2R_21890001 RAL-88 601 chr2R 21906271 21906299 chr2R 21906372 21906400 8 101 2.5 2.0 2.2 2.5 129 chr2R 21906271 intron Fili + chr2R 21906336 intron Fili + chr2R 21906400 intron Fili + chr2R_8_21905001 chr2R_21905001 RAL-88 602 chr2R 22043550 22043572 chr2R 22043630 22043652 4 80 2.0 1.0 1.5 1.6 102 chr2R 22043550 intergenic not near genes chr2R 22043601 intergenic not near genes chr2R 22043652 intergenic not near genes chr2R_4_22040001 chr2R_22040001 RAL-88 603 chr2R 22178745 22178774 chr2R 22178829 22178860 10 86 1.5 1.5 1.5 4.0 115 chr2R 22178745 intron CG11170 - chr2R 22178802 intron CG11170 - chr2R 22178860 intron CG11170 - chr2R_10_22175001 chr2R_22175001 RAL-88 604 chr2R 22185682 22185693 chr2R 22185781 22185791 7 98 3.5 1.0 2.2 2.2 109 chr2R 22185682 3` UTR MED16 + chr2R 22185736 3` UTR MED16 + chr2R 22185791 3` UTR MED16 + chr2R_7_22185001 chr2R_22185001 RAL-88 605 chr2R 22221868 22221871 chr2R 22222165 22222183 4 307 2.0 2.0 2.0 1.3 315 chr2R 22221868 exon Oatp58Db - chr2R 22222026 exon Oatp58Db - chr2R 22222183 exon Oatp58Db - chr2R_4_22220001 chr2R_22220001 RAL-88 606 chr2R 22349696 22349725 chr2R 22351478 22351509 jockey 7 1782 1.0 3.5 2.2 2.2 1813 chr2R 22349696 intron Liprin-gamma - chr2R 22350602 intron Liprin-gamma - chr2R 22351509 intron Liprin-gamma - chr2R_7_22350001 chr2R_22350001 RAL-88 607 chr2R 22377815 22377833 chr2R 22377901 22377918 4 85 1.5 1.5 1.5 1.6 103 chr2R 22377815 3` UTR Rtf1 + chr2R 22377866 3` UTR Rtf1 + chr2R 22377918 3` UTR Rtf1 + chr2R_4_22375001 chr2R_22375001 RAL-88 608 chr2R 22460386 22460406 chr2R 22460465 22460485 5 79 4.0 1.5 2.8 1.3 99 chr2R 22460386 intron CG10384 + chr2R 22460436 intron CG10384 + chr2R 22460485 intron CG10384 + chr2R_5_22460001 chr2R_22460001 RAL-88 609 chr2R 22525757 22525783 chr2R 22529312 22529338 jockey 5 3555 1.5 2.0 1.8 1.8 3581 chr2R 22525757 intron px - chr2R 22527548 intron px - chr2R 22529338 intron px - chr2R_5_22525001 chr2R_22525001 RAL-88 610 chr2R 22577090 22577123 chr2R 22577170 22577200 5 79 2.5 0.5 1.5 2.0 110 chr2R 22577090 intron dnr1 - chr2R 22577145 intron dnr1 - chr2R 22577200 intron dnr1 - chr2R_5_22575001 chr2R_22575001 RAL-88 611 chr2R 22662266 22662273 chr2R 22662366 22662374 5 101 0.5 2.5 1.5 2.0 108 chr2R 22662266 intron CG42566 + chr2R 22662320 intron CG42566 + chr2R 22662374 intron CG42566 + chr2R_5_22660001 chr2R_22660001 RAL-88 612 chr2R 22774963 22775000 chr2R 22775379 22775419 jockey 9 418 1.0 2.0 1.5 3.6 456 chr2R 22774963 intron CG42260 - chr2R 22775191 intron CG42260 - chr2R 22775419 intron CG42260 - chr2R_9_22775001 chr2R_22775001 RAL-88 613 chr2R 22785734 22785760 chr2R 22785812 22785838 6 78 0.0 0.0 0.0 6.0 104 chr2R 22785734 intron CG42260 - chr2R 22785786 intron CG42260 - chr2R 22785838 intron CG42260 - chr2R_6_22785001 chr2R_22785001 RAL-88 614 chr2R 22834791 22834800 chr2R 22834904 22834912 4 113 1.0 2.0 1.5 1.6 121 chr2R 22834791 intron CG12490 + chr2R 22834852 intron CG12490 + chr2R 22834912 intron CG12490 + chr2R_4_22830001 chr2R_22830001 RAL-88 615 chr2R 22843027 22843051 chr2R 22844989 22845013 flea 5 1962 2.5 2.5 2.5 1.4 1986 chr2R 22843027 intergenic CG9826 + chr2R 22844020 intergenic not near genes chr2R 22845013 intergenic not near genes chr2R_5_22840001 chr2R_22840001 RAL-88 616 chr2R 22957053 22957058 chr2R 22957132 22957137 4 79 4.0 2.0 3.0 1.0 84 chr2R 22957053 intergenic CR44780 - chr2R 22957095 intergenic CR44780 - chr2R 22957137 intergenic CR44780 - chr2R_4_22955001 chr2R_22955001 RAL-88 617 chr2R 22988314 22988321 chr2R 22988392 22988402 4 80 1.5 6.0 3.8 0.8 88 chr2R 22988314 intron twi + chr2R 22988358 intron twi + chr2R 22988402 intron twi + chr2R_4_22985001 chr2R_22985001 RAL-88 618 chr2R 23037269 23037302 chr2R 23037345 23037377 13 75 2.5 2.5 2.5 3.7 108 chr2R 23037269 intron,intron twi +,CG42741 - chr2R 23037323 intron,intron twi +,CG42741 - chr2R 23037377 intron,intron twi +,CG42741 - chr2R_13_23035001 chr2R_23035001 RAL-88 619 chr2R 23070412 23070445 chr2R 23070508 23070541 17 95 4.5 3.5 4.0 3.4 129 chr2R 23070412 intron l(2)k09913 + chr2R 23070476 intron l(2)k09913 + chr2R 23070541 intron l(2)k09913 + chr2R_17_23070001 chr2R_23070001 RAL-88 620 chr2R 23130551 23130575 chr2R 23130643 23130669 4 93 1.5 4.0 2.8 1.1 118 chr2R 23130551 intergenic CG3215 - chr2R 23130610 intergenic CG3215 - chr2R 23130669 intergenic CG3215 - chr2R_4_23130001 chr2R_23130001 RAL-88 621 chr2R 23134839 23134854 chr2R 23134921 23134937 4 82 2.0 9.0 5.5 0.6 98 chr2R 23134839 intergenic not near genes chr2R 23134888 intergenic not near genes chr2R 23134937 intergenic not near genes chr2R_4_23130001 chr2R_23130001 RAL-88 622 chr2R 23191753 23191777 chr2R 23192388 23192412 7 635 5.0 2.0 3.5 1.6 659 chr2R 23191753 intron CG34371 - chr2R 23192082 intron CG34371 - chr2R 23192412 intron CG34371 - chr2R_7_23190001 chr2R_23190001 RAL-88 623 chr2R 23257506 23257532 chr2R 23257589 23257615 4 83 2.0 1.5 1.8 1.4 109 chr2R 23257506 intergenic not near genes chr2R 23257560 intergenic not near genes chr2R 23257615 intergenic not near genes chr2R_4_23255001 chr2R_23255001 RAL-88 624 chr2R 23437229 23437246 chr2R 23437306 23437323 7 75 4.0 5.0 4.5 1.3 94 chr2R 23437229 intergenic not near genes chr2R 23437276 intergenic not near genes chr2R 23437323 intergenic not near genes chr2R_7_23435001 chr2R_23435001 RAL-88 625 chr2R 23481661 23481668 chr2R 23481748 23481755 4 87 2.0 1.5 1.8 1.4 94 chr2R 23481661 intron CG43795 + chr2R 23481708 intron CG43795 + chr2R 23481755 intron CG43795 + chr2R_4_23480001 chr2R_23480001 RAL-88 626 chr2R 23508921 23508938 chr2R 23509038 23509055 4 117 1.0 1.5 1.2 1.8 134 chr2R 23508921 intergenic not near genes chr2R 23508988 intergenic not near genes chr2R 23509055 intergenic not near genes chr2R_4_23505001 chr2R_23505001 RAL-88 627 chr2R 23529577 23529606 chr2R 23537152 23537180 412 7 7572 4.0 2.5 3.2 1.7 7603 chr2R 23529577 intron bw - chr2R 23533378 intron bw - chr2R 23537180 exon bw - chr2R_7_23530001 chr2R_23530001 RAL-88 628 chr2R 23758332 23758354 chr2R 23758408 23758430 13 75 4.5 4.5 4.5 2.4 98 chr2R 23758332 intron CG9850 - chr2R 23758381 intron CG9850 - chr2R 23758430 intron CG9850 - chr2R_13_23755001 chr2R_23755001 RAL-88 629 chr2R 23914323 23914330 chr2R 23921947 23921954 412 4 7624 2.0 2.5 2.2 1.2 7631 chr2R 23914323 exon kcc + chr2R 23918138 intron kcc + chr2R 23921954 intron kcc + chr2R_4_23915001 chr2R_23915001 RAL-88 630 chr2R 23986512 23986540 chr2R 23986592 23986620 4 80 1.5 1.5 1.5 1.6 108 chr2R 23986512 intron Phm - chr2R 23986566 intron Phm - chr2R 23986620 intron,5` UTR Phm -,CG30178 + chr2R_4_23985001 chr2R_23985001 RAL-88 631 chr2R 24031390 24031414 chr2R 24031468 24031498 6 82 2.0 2.5 2.2 1.9 108 chr2R 24031390 5` UTR CG30172 - chr2R 24031444 intergenic CG30172 -,Chi - chr2R 24031498 intergenic Chi -,CG30172 - chr2R_6_24030001 chr2R_24030001 RAL-88 632 chr2R 24147086 24147098 chr2R 24154662 24154674 412 4 7575 3.5 9.0 6.2 0.6 7588 chr2R 24147086 intron Dat + chr2R 24150880 intron Dat + chr2R 24154674 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-88 633 chr2R 24228409 24228428 chr2R 24228489 24228505 4 78 0.5 5.5 3.0 1.0 96 chr2R 24228409 intron CG30419 - chr2R 24228457 intron CG30419 - chr2R 24228505 intron CG30419 - chr2R_4_24225001 chr2R_24225001 RAL-88 634 chr2R 24351417 24351440 chr2R 24351498 24351520 7 81 2.5 2.5 2.5 2.0 103 chr2R 24351417 intron bs + chr2R 24351468 intron bs + chr2R 24351520 intron,3` UTR bs +,CR44811 - chr2R_7_24350001 chr2R_24350001 RAL-88 635 chr2R 24353435 24353460 chr2R 24361794 24361822 roo 5 8361 0.5 4.0 2.2 1.6 8387 chr2R 24353435 intron,intron bs +,CR44811 - chr2R 24357628 intron,intron bs +,CR44811 - chr2R 24361822 intron,intron bs +,CR44811 - chr2R_5_24355001 chr2R_24355001 RAL-88 636 chr2R 24383826 24383858 chr2R 24383907 24383939 12 79 1.0 2.0 1.5 4.8 113 chr2R 24383826 intron mAChR-A - chr2R 24383882 intron mAChR-A - chr2R 24383939 exon mAChR-A - chr2R_12_24380001 chr2R_24380001 RAL-88 637 chr2R 24470369 24470374 chr2R 24470462 24470469 6 94 4.5 5.0 4.8 1.0 100 chr2R 24470369 intron CG13579 + chr2R 24470419 intron CG13579 + chr2R 24470469 intron CG13579 + chr2R_6_24470001 chr2R_24470001 RAL-88 638 chr2R 24470377 24470391 chr2R 24470461 24470485 5 91 3.0 4.5 3.8 1.0 108 chr2R 24470377 intron CG13579 + chr2R 24470431 intron CG13579 + chr2R 24470485 intron CG13579 + chr2R_5_24470001 chr2R_24470001 RAL-88 639 chr2R 24542597 24542626 chr2R 24542690 24542722 7 96 2.5 0.5 1.5 2.8 125 chr2R 24542597 intron,intron CG4622 -,ITP + chr2R 24542660 intron,intron CG4622 -,ITP + chr2R 24542722 intron,intron CG4622 -,ITP + chr2R_7_24540001 chr2R_24540001 RAL-88 640 chr2R 24590098 24590145 chr2R 24590206 24590237 5 98 0.0 2.5 1.2 2.3 139 chr2R 24590098 intron pio + chr2R 24590168 intron pio + chr2R 24590237 intron pio + chr2R_5_24590001 chr2R_24590001 RAL-88 641 chr2R 24592948 24592977 chr2R 24593039 24593068 8 92 2.5 3.0 2.8 2.1 120 chr2R 24592948 intron pio + chr2R 24593008 intron pio + chr2R 24593068 intron pio + chr2R_8_24590001 chr2R_24590001 RAL-88 642 chr2R 24647597 24647618 chr2R 24655147 24655175 412 7 7555 4.0 3.5 3.8 1.5 7578 chr2R 24647597 intergenic not near genes chr2R 24651386 intergenic not near genes chr2R 24655175 intergenic not near genes chr2R_7_24650001 chr2R_24650001 RAL-88 643 chr2R 24721251 24721280 chr2R 24721402 24721431 14 150 3.0 5.0 4.0 2.8 180 chr2R 24721251 intron Mid1 - chr2R 24721341 intron Mid1 - chr2R 24721431 intron Mid1 - chr2R_14_24720001 chr2R_24720001 RAL-88 644 chr2R 24727892 24727918 chr2R 24735396 24735425 mdg1 12 7507 0.5 3.0 1.8 4.3 7533 chr2R 24727892 intron Mid1 - chr2R 24731658 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_12_24730001 chr2R_24730001 RAL-88 645 chr2R 24763612 24763644 chr2R 24765584 24765620 G2 11 1972 2.5 3.0 2.8 2.9 2008 chr2R 24763612 exon CG3894 + chr2R 24764616 intron CG3894 + chr2R 24765620 exon CG3894 + chr2R_11_24760001 chr2R_24760001 RAL-88 646 chr2R 24859845 24859852 chr2R 24859931 24859938 4 86 5.0 3.0 4.0 0.8 93 chr2R 24859845 5` UTR CR44829 + chr2R 24859892 5` UTR CR44829 + chr2R 24859938 5` UTR CR44829 + chr2R_4_24855001 chr2R_24855001 RAL-88 647 chr2R 25022645 25022659 chr2R 25022729 25022737 4 82 0.5 1.5 1.0 2.0 92 chr2R 25022645 intron uzip + chr2R 25022691 intron uzip + chr2R 25022737 intron uzip + chr2R_4_25020001 chr2R_25020001 RAL-88 648 chr2R 25061336 25061361 chr2R 25061419 25061443 5 80 3.5 5.0 4.2 1.0 107 chr2R 25061336 intergenic not near genes chr2R 25061390 intergenic not near genes chr2R 25061443 intergenic not near genes chr2R_5_25060001 chr2R_25060001 RAL-88 649 chr2R 25081614 25081636 chr2R 25082709 25082732 12 1095 1.5 6.0 3.8 2.5 1118 chr2R 25081614 intron gol - chr2R 25082173 intron gol - chr2R 25082732 intron gol - chr2R_12_25080001 chr2R_25080001 RAL-88 650 chr2R 25101275 25101293 chr2R 25101377 25101395 6 102 2.5 0.0 1.2 2.7 120 chr2R 25101275 intron lov - chr2R 25101335 intron lov - chr2R 25101395 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-88 651 chr3L 68986 69015 chr3L 69073 69093 6 85 4.0 6.0 5.0 1.0 107 chr3L 68986 3` UTR Lsp1gamma + chr3L 69040 intergenic Lsp1gamma +,CR44510 + chr3L 69093 intergenic CR44510 +,Lsp1gamma + chr3L_6_65001 chr3L_65001 RAL-88 652 chr3L 88745 88778 chr3L 90665 90698 11 1920 0.5 2.5 1.5 4.4 1953 chr3L 88745 intergenic not near genes chr3L 89722 intergenic not near genes chr3L 90698 intergenic not near genes chr3L_11_85001 chr3L_85001 RAL-88 653 chr3L 110209 110242 chr3L 119376 119409 roo 8 9166 1.5 3.0 2.2 2.5 9200 chr3L 110209 intergenic not near genes chr3L 114809 intergenic not near genes chr3L 119409 intergenic not near genes chr3L_8_110001 chr3L_110001 RAL-88 654 chr3L 285556 285590 chr3L 285649 285684 7 93 0.5 4.5 2.5 2.0 128 chr3L 285556 intron RhoGEF3 + chr3L 285620 intron RhoGEF3 + chr3L 285684 intron RhoGEF3 + chr3L_7_285001 chr3L_285001 RAL-88 655 chr3L 402690 402718 chr3L 409742 409771 297 8 7052 3.0 2.5 2.8 2.1 7081 chr3L 402690 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_8_405001 chr3L_405001 RAL-88 656 chr3L 416146 416168 chr3L 416234 416256 6 88 1.5 1.5 1.5 2.4 110 chr3L 416146 intergenic not near genes chr3L 416201 intergenic not near genes chr3L 416256 intergenic not near genes chr3L_6_415001 chr3L_415001 RAL-88 657 chr3L 459982 460006 chr3L 460059 460082 8 73 2.0 4.0 3.0 2.0 100 chr3L 459982 intron klar - chr3L 460032 intron klar - chr3L 460082 intron klar - chr3L_8_460001 chr3L_460001 RAL-88 658 chr3L 491638 491665 chr3L 491720 491747 4 82 2.0 0.0 1.0 2.0 109 chr3L 491638 intron klar - chr3L 491692 intron klar - chr3L 491747 intron klar - chr3L_4_490001 chr3L_490001 RAL-88 659 chr3L 494593 494620 chr3L 494675 494702 4 82 5.0 0.0 2.5 1.1 109 chr3L 494593 intron klar - chr3L 494648 intron klar - chr3L 494702 intron klar - chr3L_4_490001 chr3L_490001 RAL-88 660 chr3L 563972 564002 chr3L 564151 564174 10 178 2.0 2.5 2.2 3.1 202 chr3L 563972 intron hipk + chr3L 564073 intron hipk + chr3L 564174 intron hipk + chr3L_10_560001 chr3L_560001 RAL-88 661 chr3L 642473 642502 chr3L 642564 642593 6 91 1.5 2.0 1.8 2.1 120 chr3L 642473 5` UTR CR43334 + chr3L 642533 5` UTR CR43334 + chr3L 642593 5` UTR CR43334 + chr3L_6_640001 chr3L_640001 RAL-88 662 chr3L 651390 651424 chr3L 651475 651512 5 87 2.0 3.5 2.8 1.3 122 chr3L 651390 intergenic Gale +,CG3402 - chr3L 651451 intergenic CG3402 -,Gale + chr3L 651512 intergenic CG3402 -,Gale + chr3L_5_650001 chr3L_650001 RAL-88 663 chr3L 705248 705262 chr3L 705324 705338 7 76 5.0 3.0 4.0 1.4 90 chr3L 705248 intergenic CR44514 + chr3L 705293 intergenic CR44514 + chr3L 705338 5` UTR CR44514 + chr3L_7_705001 chr3L_705001 RAL-88 664 chr3L 717910 717915 chr3L 717972 718003 4 80 0.0 2.0 1.0 2.0 93 chr3L 717910 intergenic not near genes chr3L 717956 intergenic not near genes chr3L 718003 intergenic not near genes chr3L_4_715001 chr3L_715001 RAL-88 665 chr3L 925174 925207 chr3L 932600 932632 mdg1 13 7426 1.5 2.5 2.0 4.3 7458 chr3L 925174 intron Glut1 + chr3L 928903 intron Glut1 + chr3L 932632 intron Glut1 + chr3L_13_925001 chr3L_925001 RAL-88 666 chr3L 933917 933941 chr3L 934020 934044 8 103 1.5 0.5 1.0 4.0 127 chr3L 933917 intron Glut1 + chr3L 933980 intron Glut1 + chr3L 934044 intron Glut1 + chr3L_8_930001 chr3L_930001 RAL-88 667 chr3L 939773 939801 chr3L 940893 940922 jockey 9 1121 5.0 2.0 3.5 2.0 1149 chr3L 939773 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940922 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-88 668 chr3L 958329 958334 chr3L 958411 958418 4 83 4.5 5.5 5.0 0.7 89 chr3L 958329 intron Glut1 + chr3L 958374 intron Glut1 + chr3L 958418 intron Glut1 + chr3L_4_955001 chr3L_955001 RAL-88 669 chr3L 961022 961037 chr3L 961115 961130 4 93 1.5 1.0 1.2 1.8 108 chr3L 961022 intron Glut1 + chr3L 961076 intron Glut1 + chr3L 961130 intron Glut1 + chr3L_4_960001 chr3L_960001 RAL-88 670 chr3L 1047359 1047385 chr3L 1055165 1055171 412 4 7804 0.0 3.0 1.5 1.6 7812 chr3L 1047359 intron bab1 - chr3L 1051265 intron bab1 - chr3L 1055171 intron bab1 - chr3L_4_1050001 chr3L_1050001 RAL-88 671 chr3L 1109632 1109666 chr3L 1109720 1109754 9 86 1.0 3.5 2.2 2.8 122 chr3L 1109632 intergenic not near genes chr3L 1109693 intergenic not near genes chr3L 1109754 intergenic not near genes chr3L_9_1105001 chr3L_1105001 RAL-88 672 chr3L 1210396 1210415 chr3L 1210736 1210749 4 338 3.0 1.0 2.0 1.3 353 chr3L 1210396 intron mwh + chr3L 1210572 intron,exon mwh +,LysC + chr3L 1210749 intron,exon,3` UTR mwh +,LysC +,LysD - chr3L_4_1210001 chr3L_1210001 RAL-88 673 chr3L 1219596 1219623 chr3L 1227329 1227356 412 6 7733 1.5 5.0 3.2 1.4 7760 chr3L 1219596 intron mwh + chr3L 1223476 intron mwh + chr3L 1227356 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-88 674 chr3L 1256450 1256482 chr3L 1256536 1256570 5 83 2.0 4.5 3.2 1.2 120 chr3L 1256450 5` UTR CG9134 + chr3L 1256510 5` UTR CG9134 + chr3L 1256570 5` UTR CG9134 + chr3L_5_1255001 chr3L_1255001 RAL-88 675 chr3L 1310992 1310993 chr3L 1315852 1315873 4 4865 24.0 23.5 23.8 0.2 4881 chr3L 1310992 exon CG2469 + chr3L 1313432 intergenic CG9186 -,CG9153 + chr3L 1315873 exon CG9153 + chr3L_4_1310001 chr3L_1310001 RAL-88 676 chr3L 1359316 1359323 chr3L 1359396 1359402 4 80 3.0 5.5 4.2 0.8 86 chr3L 1359316 intron Ptp61F - chr3L 1359359 intron Ptp61F - chr3L 1359402 intron Ptp61F - chr3L_4_1355001 chr3L_1355001 RAL-88 677 chr3L 1364050 1364065 chr3L 1364136 1364151 7 85 0.0 4.0 2.0 2.3 101 chr3L 1364050 intron Ptp61F - chr3L 1364100 intron Ptp61F - chr3L 1364151 intron Ptp61F - chr3L_7_1360001 chr3L_1360001 RAL-88 678 chr3L 1381886 1381900 chr3L 1382119 1382133 6 232 1.0 5.0 3.0 1.5 247 chr3L 1381886 intron,intron Ptp61F -,ru + chr3L 1382010 intron,intron Ptp61F -,ru + chr3L 1382133 intron,intron Ptp61F -,ru + chr3L_6_1380001 chr3L_1380001 RAL-88 679 chr3L 1406187 1406216 chr3L 1406297 1406325 9 109 3.0 3.5 3.2 2.1 138 chr3L 1406187 intron Ptp61F - chr3L 1406256 intron Ptp61F - chr3L 1406325 intron Ptp61F - chr3L_9_1405001 chr3L_1405001 RAL-88 680 chr3L 1415780 1415808 chr3L 1415861 1415890 12 80 2.0 3.0 2.5 3.4 110 chr3L 1415780 intron Ptp61F - chr3L 1415835 intron Ptp61F - chr3L 1415890 intron Ptp61F - chr3L_12_1415001 chr3L_1415001 RAL-88 681 chr3L 1473091 1473108 chr3L 1473176 1473193 5 84 4.0 2.0 3.0 1.2 102 chr3L 1473091 5` UTR Ptp61F - chr3L 1473142 5` UTR Ptp61F - chr3L 1473193 5` UTR Ptp61F - chr3L_5_1470001 chr3L_1470001 RAL-88 682 chr3L 1505996 1506030 chr3L 1513593 1513627 17.6 10 7597 3.5 1.0 2.2 3.1 7631 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_10_1505001 chr3L_1505001 RAL-88 683 chr3L 1674341 1674355 chr3L 1674424 1674430 4 80 1.0 2.5 1.8 1.4 89 chr3L 1674341 intergenic CG7991 + chr3L 1674386 intergenic CG7991 + chr3L 1674430 intergenic CG7991 + chr3L_4_1670001 chr3L_1670001 RAL-88 684 chr3L 2006475 2006501 chr3L 2006552 2006578 19 78 2.0 3.0 2.5 5.4 103 chr3L 2006475 intergenic not near genes chr3L 2006526 intergenic not near genes chr3L 2006578 intergenic not near genes chr3L_19_2005001 chr3L_2005001 RAL-88 685 chr3L 2277991 2278005 chr3L 2278187 2278201 11 196 3.0 2.5 2.8 2.9 210 chr3L 2277991 3` UTR yellow-g2 + chr3L 2278096 intergenic yellow-g2 + chr3L 2278201 intergenic yellow-g2 + chr3L_11_2275001 chr3L_2275001 RAL-88 686 chr3L 2308003 2308035 chr3L 2308109 2308120 8 103 3.5 3.5 3.5 1.8 117 chr3L 2308003 intergenic not near genes chr3L 2308062 intergenic not near genes chr3L 2308120 intergenic not near genes chr3L_8_2305001 chr3L_2305001 RAL-88 687 chr3L 2321161 2321190 chr3L 2321238 2321267 8 77 1.0 0.0 0.5 5.3 106 chr3L 2321161 intergenic not near genes chr3L 2321214 intergenic not near genes chr3L 2321267 intergenic not near genes chr3L_8_2320001 chr3L_2320001 RAL-88 688 chr3L 2331581 2331612 chr3L 2331657 2331689 8 76 2.0 1.0 1.5 3.2 108 chr3L 2331581 intron MsR1 + chr3L 2331635 intron MsR1 + chr3L 2331689 intron MsR1 + chr3L_8_2330001 chr3L_2330001 RAL-88 689 chr3L 2447506 2447517 chr3L 2456662 2456673 roo 4 9156 7.0 5.0 6.0 0.6 9167 chr3L 2447506 intron CG45186 + chr3L 2452090 intron CG45186 + chr3L 2456673 intron CG45186 + chr3L_4_2450001 chr3L_2450001 RAL-88 690 chr3L 2447518 2447534 chr3L 2456661 2456690 roo 4 9148 4.5 5.0 4.8 0.7 9172 chr3L 2447518 intron CG45186 + chr3L 2452104 intron CG45186 + chr3L 2456690 intron CG45186 + chr3L_4_2450001 chr3L_2450001 RAL-88 691 chr3L 2492321 2492329 chr3L 2492410 2492420 6 91 1.5 1.5 1.5 2.4 99 chr3L 2492321 intron,3` UTR CG45186 +,CG1146 + chr3L 2492370 intron,3` UTR CG45186 +,CG1146 + chr3L 2492420 intron,3` UTR CG45186 +,CG1146 + chr3L_6_2490001 chr3L_2490001 RAL-88 692 chr3L 2493826 2493839 chr3L 2493904 2493917 6 78 4.0 1.0 2.5 1.7 91 chr3L 2493826 intron CG45186 + chr3L 2493872 intron CG45186 + chr3L 2493917 intron CG45186 + chr3L_6_2490001 chr3L_2490001 RAL-88 693 chr3L 2674781 2674808 chr3L 2674862 2674889 5 81 2.0 2.0 2.0 1.7 108 chr3L 2674781 intron Fife - chr3L 2674835 intron Fife - chr3L 2674889 intron Fife - chr3L_5_2670001 chr3L_2670001 RAL-88 694 chr3L 2683960 2683979 chr3L 2684035 2684055 6 76 2.5 1.5 2.0 2.0 95 chr3L 2683960 intron Fife - chr3L 2684008 intron Fife - chr3L 2684055 intron Fife - chr3L_6_2680001 chr3L_2680001 RAL-88 695 chr3L 2740230 2740246 chr3L 2740338 2740355 4 109 1.5 3.0 2.2 1.2 125 chr3L 2740230 intron Mrtf - chr3L 2740292 intron Mrtf - chr3L 2740355 intron Mrtf - chr3L_4_2740001 chr3L_2740001 RAL-88 696 chr3L 2751454 2751463 chr3L 2755749 2755758 F-element 5 4295 2.0 3.0 2.5 1.4 4304 chr3L 2751454 intron Mrtf - chr3L 2753606 intron Mrtf - chr3L 2755758 intron Mrtf - chr3L_5_2750001 chr3L_2750001 RAL-88 697 chr3L 2854485 2854504 chr3L 2854563 2854582 4 78 4.5 1.5 3.0 1.0 97 chr3L 2854485 intron CG43444 - chr3L 2854534 intron CG43444 - chr3L 2854582 intron CG43444 - chr3L_4_2850001 chr3L_2850001 RAL-88 698 chr3L 2966011 2966036 chr3L 2966093 2966118 9 82 3.0 2.0 2.5 2.6 107 chr3L 2966011 intergenic not near genes chr3L 2966064 intergenic not near genes chr3L 2966118 intergenic not near genes chr3L_9_2965001 chr3L_2965001 RAL-88 699 chr3L 2987715 2987732 chr3L 2987797 2987814 5 81 1.5 0.0 0.8 2.8 99 chr3L 2987715 intergenic not near genes chr3L 2987764 intergenic not near genes chr3L 2987814 intergenic not near genes chr3L_5_2985001 chr3L_2985001 RAL-88 700 chr3L 3028344 3028364 chr3L 3028420 3028440 9 77 2.0 2.5 2.2 2.8 96 chr3L 3028344 intergenic not near genes chr3L 3028392 intergenic not near genes chr3L 3028440 intergenic not near genes chr3L_9_3025001 chr3L_3025001 RAL-88 701 chr3L 3057252 3057277 chr3L 3057396 3057421 9 144 4.5 3.5 4.0 1.8 169 chr3L 3057252 exon CG32486 - chr3L 3057336 intron CG32486 - chr3L 3057421 intron CG32486 - chr3L_9_3055001 chr3L_3055001 RAL-88 702 chr3L 3254080 3254116 chr3L 3254170 3254206 10 90 0.5 4.5 2.5 2.9 126 chr3L 3254080 5` UTR CR43626 + chr3L 3254143 5` UTR CR43626 + chr3L 3254206 5` UTR CR43626 + chr3L_10_3250001 chr3L_3250001 RAL-88 703 chr3L 3259816 3259830 chr3L 3259915 3259928 5 99 0.0 0.5 0.2 4.2 112 chr3L 3259816 intron ckd + chr3L 3259872 intron ckd + chr3L 3259928 intron ckd + chr3L_5_3255001 chr3L_3255001 RAL-88 704 chr3L 3281454 3281473 chr3L 3281932 3281965 Doc 10 488 1.0 3.5 2.2 3.1 511 chr3L 3281454 intron CG12017 + chr3L 3281710 intron CG12017 + chr3L 3281965 intron CG12017 + chr3L_10_3280001 chr3L_3280001 RAL-88 705 chr3L 3310302 3310324 chr3L 3310370 3310403 6 75 2.0 3.5 2.8 1.6 101 chr3L 3310302 intron ZnT63C + chr3L 3310352 intron ZnT63C + chr3L 3310403 intron ZnT63C + chr3L_6_3310001 chr3L_3310001 RAL-88 706 chr3L 3388702 3388727 chr3L 3388831 3388856 12 127 3.0 2.5 2.8 3.2 154 chr3L 3388702 intergenic not near genes chr3L 3388779 intergenic not near genes chr3L 3388856 intergenic not near genes chr3L_12_3385001 chr3L_3385001 RAL-88 707 chr3L 3436288 3436314 chr3L 3436367 3436393 8 79 0.0 1.5 0.8 4.4 105 chr3L 3436288 intron eIF5B - chr3L 3436340 intron eIF5B - chr3L 3436393 intron eIF5B - chr3L_8_3435001 chr3L_3435001 RAL-88 708 chr3L 3475076 3475105 chr3L 3475519 3475548 jockey 8 444 1.5 4.0 2.8 2.1 472 chr3L 3475076 intron CG42324 + chr3L 3475312 intron CG42324 + chr3L 3475548 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-88 709 chr3L 3565939 3565968 chr3L 3566013 3566042 7 72 4.0 3.5 3.8 1.5 103 chr3L 3565939 intron Eip63E + chr3L 3565990 intron Eip63E + chr3L 3566042 intron Eip63E + chr3L_7_3565001 chr3L_3565001 RAL-88 710 chr3L 3585606 3585625 chr3L 3585698 3585717 4 92 1.5 3.0 2.2 1.2 111 chr3L 3585606 intron Eip63E + chr3L 3585662 intron Eip63E + chr3L 3585717 intron Eip63E + chr3L_4_3585001 chr3L_3585001 RAL-88 711 chr3L 3601304 3601330 chr3L 3606615 3606641 copia 7 5310 4.0 4.5 4.2 1.3 5337 chr3L 3601304 intron Eip63E + chr3L 3603972 intron Eip63E + chr3L 3606641 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-88 712 chr3L 3627247 3627360 chr3L 3627352 3627452 4 98 4.0 0.5 2.2 1.2 205 chr3L 3627247 intron dar1 + chr3L 3627350 intron dar1 + chr3L 3627452 intron dar1 + chr3L_4_3625001 chr3L_3625001 RAL-88 713 chr3L 3642158 3642181 chr3L 3642264 3642287 9 105 4.5 4.0 4.2 1.7 129 chr3L 3642158 intron dar1 + chr3L 3642222 intron dar1 + chr3L 3642287 intron dar1 + chr3L_9_3640001 chr3L_3640001 RAL-88 714 chr3L 3700107 3700135 chr3L 3700188 3700218 5 83 3.5 2.5 3.0 1.2 111 chr3L 3700107 intergenic not near genes chr3L 3700162 intergenic not near genes chr3L 3700218 intergenic not near genes chr3L_5_3700001 chr3L_3700001 RAL-88 715 chr3L 3761934 3761958 chr3L 3762429 3762450 4 494 3.0 0.5 1.8 1.4 516 chr3L 3761934 intron CG32264 - chr3L 3762192 intron CG32264 - chr3L 3762450 intron CG32264 - chr3L_4_3760001 chr3L_3760001 RAL-88 716 chr3L 3763756 3763766 chr3L 3763837 3763847 5 81 1.5 0.0 0.8 2.8 91 chr3L 3763756 intron CG32264 - chr3L 3763802 intron CG32264 - chr3L 3763847 intron CG32264 - chr3L_5_3760001 chr3L_3760001 RAL-88 717 chr3L 3833738 3833766 chr3L 3833979 3834007 pogo 4 238 2.5 0.5 1.5 1.6 269 chr3L 3833738 intron enc + chr3L 3833872 intron enc + chr3L 3834007 intron enc + chr3L_4_3830001 chr3L_3830001 RAL-88 718 chr3L 3890961 3890980 chr3L 3891042 3891061 6 80 4.5 0.0 2.2 1.9 100 chr3L 3890961 intergenic not near genes chr3L 3891011 intergenic not near genes chr3L 3891061 intergenic not near genes chr3L_6_3890001 chr3L_3890001 RAL-88 719 chr3L 3981754 3981778 chr3L 3981837 3981861 8 83 4.0 5.0 4.5 1.5 107 chr3L 3981754 intergenic not near genes chr3L 3981808 intergenic not near genes chr3L 3981861 intergenic not near genes chr3L_8_3980001 chr3L_3980001 RAL-88 720 chr3L 4058841 4058875 chr3L 4058921 4058955 7 80 3.5 4.0 3.8 1.5 114 chr3L 4058841 3` UTR CG1136 + chr3L 4058898 3` UTR CG1136 + chr3L 4058955 3` UTR CG1136 + chr3L_7_4055001 chr3L_4055001 RAL-88 721 chr3L 4195137 4195172 chr3L 4195240 4195276 14 102 5.5 3.5 4.5 2.5 139 chr3L 4195137 exon CG43367 + chr3L 4195206 intron CG43367 + chr3L 4195276 intron CG43367 + chr3L_14_4195001 chr3L_4195001 RAL-88 722 chr3L 4311789 4311821 chr3L 4311892 4311923 6 103 2.5 1.5 2.0 2.0 134 chr3L 4311789 intergenic not near genes chr3L 4311856 intergenic not near genes chr3L 4311923 intergenic not near genes chr3L_6_4310001 chr3L_4310001 RAL-88 723 chr3L 4328748 4328752 chr3L 4336237 4336248 412 4 7495 4.0 2.0 3.0 1.0 7500 chr3L 4328748 intron Cip4 - chr3L 4332498 intron Cip4 - chr3L 4336248 intron Cip4 - chr3L_4_4330001 chr3L_4330001 RAL-88 724 chr3L 4347831 4347848 chr3L 4347917 4347931 5 85 4.0 4.0 4.0 1.0 100 chr3L 4347831 intron Cip4 - chr3L 4347881 intron Cip4 - chr3L 4347931 intron Cip4 - chr3L_5_4345001 chr3L_4345001 RAL-88 725 chr3L 4519419 4519441 chr3L 4519496 4519517 6 77 6.0 1.5 3.8 1.2 98 chr3L 4519419 intron Tie - chr3L 4519468 intron Tie - chr3L 4519517 intron Tie - chr3L_6_4515001 chr3L_4515001 RAL-88 726 chr3L 4580302 4580332 chr3L 4580388 4580418 6 86 3.0 3.0 3.0 1.5 116 chr3L 4580302 intron CG42540 + chr3L 4580360 intron CG42540 + chr3L 4580418 intron CG42540 + chr3L_6_4580001 chr3L_4580001 RAL-88 727 chr3L 4708488 4708514 chr3L 4708607 4708616 5 115 2.0 1.0 1.5 2.0 128 chr3L 4708488 intron RhoGEF64C + chr3L 4708552 intron RhoGEF64C + chr3L 4708616 intron RhoGEF64C + chr3L_5_4705001 chr3L_4705001 RAL-88 728 chr3L 4748709 4748732 chr3L 4748800 4748823 12 90 4.5 3.0 3.8 2.5 114 chr3L 4748709 intron RhoGEF64C + chr3L 4748766 intron RhoGEF64C + chr3L 4748823 intron RhoGEF64C + chr3L_12_4745001 chr3L_4745001 RAL-88 729 chr3L 4837890 4837922 chr3L 4837969 4837988 5 76 2.0 2.0 2.0 1.7 98 chr3L 4837890 3` UTR CG13707 - chr3L 4837939 3` UTR CG13707 - chr3L 4837988 3` UTR CG13707 - chr3L_5_4835001 chr3L_4835001 RAL-88 730 chr3L 4858317 4858336 chr3L 4858407 4858426 4 90 2.0 9.0 5.5 0.6 109 chr3L 4858317 intergenic not near genes chr3L 4858372 intergenic not near genes chr3L 4858426 intergenic not near genes chr3L_4_4855001 chr3L_4855001 RAL-88 731 chr3L 4901133 4901152 chr3L 4907323 4907342 diver 9 6190 1.5 0.0 0.8 5.0 6209 chr3L 4901133 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907342 intergenic not near genes chr3L_9_4900001 chr3L_4900001 RAL-88 732 chr3L 4907980 4907989 chr3L 4908056 4908065 5 76 1.0 2.5 1.8 1.8 85 chr3L 4907980 intergenic not near genes chr3L 4908022 intergenic not near genes chr3L 4908065 intergenic not near genes chr3L_5_4905001 chr3L_4905001 RAL-88 733 chr3L 5034162 5034188 chr3L 5043314 5043340 roo 6 9152 1.0 2.0 1.5 2.4 9178 chr3L 5034162 intron Con - chr3L 5038751 intron Con - chr3L 5043340 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-88 734 chr3L 5104488 5104502 chr3L 5124622 5124636 4 20134 3.0 1.0 2.0 1.3 20148 chr3L 5104488 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124636 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-88 735 chr3L 5212240 5212270 chr3L 5212321 5212353 7 82 2.0 3.0 2.5 2.0 113 chr3L 5212240 intron shep - chr3L 5212296 intron shep - chr3L 5212353 intron shep - chr3L_7_5210001 chr3L_5210001 RAL-88 736 chr3L 5299155 5299186 chr3L 5306591 5306622 Quasimodo 4 7436 0.5 1.0 0.8 2.2 7467 chr3L 5299155 intergenic not near genes chr3L 5302888 intergenic not near genes chr3L 5306622 intergenic not near genes chr3L_4_5300001 chr3L_5300001 RAL-88 737 chr3L 5376756 5376775 chr3L 5376842 5376862 6 86 2.0 5.5 3.8 1.2 106 chr3L 5376756 intergenic not near genes chr3L 5376809 intergenic not near genes chr3L 5376862 intergenic not near genes chr3L_6_5375001 chr3L_5375001 RAL-88 738 chr3L 5572141 5572154 chr3L 5572248 5572262 4 109 1.5 10.0 5.8 0.6 121 chr3L 5572141 intron Msr-110 - chr3L 5572202 intron Msr-110 - chr3L 5572262 intron Msr-110 - chr3L_4_5570001 chr3L_5570001 RAL-88 739 chr3L 5667627 5667640 chr3L 5667707 5667717 6 79 3.5 0.0 1.8 2.1 90 chr3L 5667627 intron sif + chr3L 5667672 intron sif + chr3L 5667717 intron sif + chr3L_6_5665001 chr3L_5665001 RAL-88 740 chr3L 5683264 5683282 chr3L 5683351 5683369 4 86 4.5 3.5 4.0 0.8 105 chr3L 5683264 intron sif + chr3L 5683316 intron sif + chr3L 5683369 intron sif + chr3L_4_5680001 chr3L_5680001 RAL-88 741 chr3L 5809955 5809990 chr3L 5810031 5810066 7 75 3.0 2.5 2.8 1.8 111 chr3L 5809955 intron S6k - chr3L 5810010 intron S6k - chr3L 5810066 intron S6k - chr3L_7_5810001 chr3L_5810001 RAL-88 742 chr3L 5926339 5926348 chr3L 5926503 5926538 BS 4 176 3.5 3.0 3.2 1.0 199 chr3L 5926339 intron Vap-33B + chr3L 5926438 intron Vap-33B + chr3L 5926538 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-88 743 chr3L 6001682 6001716 chr3L 6004380 6004416 jockey 5 2700 1.0 0.0 0.5 3.3 2734 chr3L 6001682 intron PVRAP + chr3L 6003049 intron PVRAP + chr3L 6004416 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-88 744 chr3L 6040374 6040388 chr3L 6042730 6042744 Doc 4 2356 2.5 2.0 2.2 1.2 2370 chr3L 6040374 intergenic Jon65Aiv + chr3L 6041559 intergenic not near genes chr3L 6042744 intergenic not near genes chr3L_4_6040001 chr3L_6040001 RAL-88 745 chr3L 6046854 6046877 chr3L 6046975 6046995 10 120 0.0 1.0 0.5 6.7 141 chr3L 6046854 intergenic not near genes chr3L 6046924 intergenic not near genes chr3L 6046995 intergenic not near genes chr3L_10_6045001 chr3L_6045001 RAL-88 746 chr3L 6052140 6052149 chr3L 6052226 6052235 4 86 2.0 0.5 1.2 1.8 95 chr3L 6052140 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052188 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052235 intergenic Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-88 747 chr3L 6058223 6058252 chr3L 6058306 6058335 5 83 0.0 0.0 0.0 5.0 112 chr3L 6058223 intergenic not near genes chr3L 6058279 intergenic not near genes chr3L 6058335 intergenic not near genes chr3L_5_6055001 chr3L_6055001 RAL-88 748 chr3L 6220919 6220945 chr3L 6230071 6230095 roo 8 9151 6.0 6.5 6.2 1.1 9176 chr3L 6220919 5` UTR pncr008:3L + chr3L 6225507 intergenic not near genes chr3L 6230095 intergenic not near genes chr3L_8_6225001 chr3L_6225001 RAL-88 749 chr3L 6335014 6335041 chr3L 6335485 6335502 297 5 469 2.5 3.5 3.0 1.2 488 chr3L 6335014 intron CG13300 - chr3L 6335258 intron CG13300 - chr3L 6335502 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-88 750 chr3L 6652083 6652106 chr3L 6652160 6652184 4 78 1.0 4.5 2.8 1.1 101 chr3L 6652083 intergenic not near genes chr3L 6652134 intergenic not near genes chr3L 6652184 intergenic not near genes chr3L_4_6650001 chr3L_6650001 RAL-88 751 chr3L 6706424 6706454 chr3L 6706503 6706533 8 79 2.0 1.5 1.8 2.9 109 chr3L 6706424 intron CG8519 + chr3L 6706478 intron CG8519 + chr3L 6706533 intron CG8519 + chr3L_8_6705001 chr3L_6705001 RAL-88 752 chr3L 6798656 6798676 chr3L 6798930 6798949 10 274 1.0 4.0 2.5 2.9 293 chr3L 6798656 intergenic not near genes chr3L 6798802 intergenic not near genes chr3L 6798949 intergenic not near genes chr3L_10_6795001 chr3L_6795001 RAL-88 753 chr3L 6855935 6855951 chr3L 6860719 6860735 Doc 6 4784 3.0 5.0 4.0 1.2 4800 chr3L 6855935 intergenic not near genes chr3L 6858335 intergenic not near genes chr3L 6860735 intergenic not near genes chr3L_6_6855001 chr3L_6855001 RAL-88 754 chr3L 6887516 6887545 chr3L 6895008 6895037 roo 9 7492 4.0 0.5 2.2 2.8 7521 chr3L 6887516 intergenic not near genes chr3L 6891276 intergenic not near genes chr3L 6895037 intergenic not near genes chr3L_9_6890001 chr3L_6890001 RAL-88 755 chr3L 6897672 6897685 chr3L 6897761 6897774 5 89 0.5 2.0 1.2 2.3 102 chr3L 6897672 intergenic not near genes chr3L 6897723 intergenic not near genes chr3L 6897774 intergenic not near genes chr3L_5_6895001 chr3L_6895001 RAL-88 756 chr3L 6909571 6909595 chr3L 6909716 6909751 11 153 4.5 4.5 4.5 2.0 180 chr3L 6909571 intergenic not near genes chr3L 6909661 intergenic not near genes chr3L 6909751 intergenic not near genes chr3L_11_6905001 chr3L_6905001 RAL-88 757 chr3L 6934343 6934364 chr3L 6934454 6934474 4 111 1.5 1.5 1.5 1.6 131 chr3L 6934343 exon CG14820 + chr3L 6934408 intron CG14820 + chr3L 6934474 intron CG14820 + chr3L_4_6930001 chr3L_6930001 RAL-88 758 chr3L 6974506 6974521 chr3L 6974607 6974622 5 101 0.0 5.5 2.8 1.3 116 chr3L 6974506 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974622 intron Galphai - chr3L_5_6970001 chr3L_6970001 RAL-88 759 chr3L 7090025 7090057 chr3L 7090106 7090123 5 78 3.0 1.0 2.0 1.7 98 chr3L 7090025 intergenic not near genes chr3L 7090074 intergenic not near genes chr3L 7090123 intergenic not near genes chr3L_5_7090001 chr3L_7090001 RAL-88 760 chr3L 7100434 7100464 chr3L 7100521 7100551 4 86 0.5 5.5 3.0 1.0 117 chr3L 7100434 intron form3 + chr3L 7100492 intron form3 + chr3L 7100551 intron form3 + chr3L_4_7100001 chr3L_7100001 RAL-88 761 chr3L 7150741 7150900 chr3L 7150866 7150976 8 94 0.0 0.0 0.0 8.0 235 chr3L 7150741 intron corn - chr3L 7150858 intron corn - chr3L 7150976 intron corn - chr3L_8_7150001 chr3L_7150001 RAL-88 762 chr3L 7244934 7244958 chr3L 7245021 7245050 7 90 4.0 0.5 2.2 2.2 116 chr3L 7244934 exon mei-P22 + chr3L 7244992 exon mei-P22 + chr3L 7245050 exon mei-P22 + chr3L_7_7240001 chr3L_7240001 RAL-88 763 chr3L 7404512 7404539 chr3L 7404731 7404759 7 220 2.5 1.5 2.0 2.3 247 chr3L 7404512 intergenic CG8560 - chr3L 7404636 intergenic CG8560 - chr3L 7404759 intergenic not near genes chr3L_7_7400001 chr3L_7400001 RAL-88 764 chr3L 7436119 7436147 chr3L 7436200 7436227 5 80 1.0 3.0 2.0 1.7 108 chr3L 7436119 intron CG42458 + chr3L 7436173 intron CG42458 + chr3L 7436227 intron CG42458 + chr3L_5_7435001 chr3L_7435001 RAL-88 765 chr3L 7572286 7572314 chr3L 7572370 7572401 14 85 2.5 3.0 2.8 3.7 115 chr3L 7572286 intergenic not near genes chr3L 7572344 intergenic not near genes chr3L 7572401 intergenic not near genes chr3L_14_7570001 chr3L_7570001 RAL-88 766 chr3L 7591159 7591176 chr3L 7591236 7591242 7 84 5.5 3.0 4.2 1.3 83 chr3L 7591159 intergenic CG7716 - chr3L 7591200 intergenic CG7716 - chr3L 7591242 intergenic CG7716 - chr3L_7_7590001 chr3L_7590001 RAL-88 767 chr3L 7659964 7659993 chr3L 7660040 7660070 12 72 5.0 3.0 4.0 2.4 106 chr3L 7659964 intron,exon,3` UTR CG32373 +,Ank2 -,CG44195 - chr3L 7660017 intron,exon,3` UTR CG32373 +,Ank2 -,CG44195 - chr3L 7660070 intron,exon,3` UTR CG32373 +,Ank2 -,CG44195 - chr3L_12_7660001 chr3L_7660001 RAL-88 768 chr3L 7719877 7719890 chr3L 7720272 7720287 8 396 0.5 3.0 1.8 2.9 410 chr3L 7719877 intron,intron CG32373 +,CG12262 + chr3L 7720082 intron,exon CG32373 +,CG12262 + chr3L 7720287 intron,exon CG32373 +,CG12262 + chr3L_8_7720001 chr3L_7720001 RAL-88 769 chr3L 7749470 7749471 chr3L 11777678 11777678 5 4028208 8.0 7.5 7.8 0.6 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9760001 chr3L_9760001 RAL-88 770 chr3L 7760081 7760109 chr3L 7760157 7760157 6 71 1.5 2.0 1.8 2.1 76 chr3L 7760081 intergenic Hn + chr3L 7760119 intergenic Hn + chr3L 7760157 intergenic Hn + chr3L_6_7760001 chr3L_7760001 RAL-88 771 chr3L 7793712 7793743 chr3L 7800764 7800795 297 5 7052 2.5 2.5 2.5 1.4 7083 chr3L 7793712 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800795 intron CG32369 - chr3L_5_7795001 chr3L_7795001 RAL-88 772 chr3L 7801338 7801367 chr3L 7801431 7801440 9 90 2.5 1.0 1.8 3.2 102 chr3L 7801338 intron CG32369 - chr3L 7801389 intron CG32369 - chr3L 7801440 intron CG32369 - chr3L_9_7800001 chr3L_7800001 RAL-88 773 chr3L 7886516 7886546 chr3L 7889034 7889064 Stalker4 5 2518 1.0 2.0 1.5 2.0 2548 chr3L 7886516 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889064 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-88 774 chr3L 7985379 7985392 chr3L 7987708 7987721 NOF 4 2329 2.0 5.5 3.8 0.8 2342 chr3L 7985379 intron nmo + chr3L 7986550 intron nmo + chr3L 7987721 intron nmo + chr3L_4_7985001 chr3L_7985001 RAL-88 775 chr3L 8295802 8295825 chr3L 8295960 8295983 8 158 2.5 7.5 5.0 1.3 181 chr3L 8295802 intergenic CG7201 - chr3L 8295892 intergenic not near genes chr3L 8295983 intergenic not near genes chr3L_8_8295001 chr3L_8295001 RAL-88 776 chr3L 8298274 8298286 chr3L 8298350 8298362 7 75 3.0 3.5 3.2 1.7 88 chr3L 8298274 3` UTR Rab19 + chr3L 8298318 3` UTR Rab19 + chr3L 8298362 3` UTR Rab19 + chr3L_7_8295001 chr3L_8295001 RAL-88 777 chr3L 8498305 8498328 chr3L 8505772 8505795 blood 4 7466 1.0 2.5 1.8 1.4 7490 chr3L 8498305 intron CG43163 - chr3L 8502050 intron CG43163 - chr3L 8505795 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-88 778 chr3L 8551741 8551773 chr3L 8551823 8551856 9 82 0.5 1.0 0.8 5.0 115 chr3L 8551741 intron rhea + chr3L 8551798 intron rhea + chr3L 8551856 intron rhea + chr3L_9_8550001 chr3L_8550001 RAL-88 779 chr3L 8765613 8765637 chr3L 8765712 8765734 6 98 2.0 2.0 2.0 2.0 121 chr3L 8765613 intron Fhos + chr3L 8765674 intron Fhos + chr3L 8765734 intron Fhos + chr3L_6_8765001 chr3L_8765001 RAL-88 780 chr3L 8784402 8784422 chr3L 8784477 8784494 6 74 2.0 0.5 1.2 2.7 92 chr3L 8784402 intron Fhos + chr3L 8784448 intron Fhos + chr3L 8784494 intron Fhos + chr3L_6_8780001 chr3L_8780001 RAL-88 781 chr3L 8838631 8838859 chr3L 8838707 8838953 15 86 0.0 1.5 0.8 8.3 322 chr3L 8838631 intron,exon dally +,CG32026 + chr3L 8838792 intron,3` UTR dally +,CG32026 + chr3L 8838953 intron dally + chr3L_15_8835001 chr3L_8835001 RAL-88 782 chr3L 9003944 9003976 chr3L 9004029 9004061 6 85 0.5 1.5 1.0 3.0 117 chr3L 9003944 intergenic not near genes chr3L 9004002 intergenic not near genes chr3L 9004061 intergenic not near genes chr3L_6_9000001 chr3L_9000001 RAL-88 783 chr3L 9076941 9076958 chr3L 9084491 9084518 412 6 7557 2.5 3.5 3.0 1.5 7577 chr3L 9076941 exon Tequila + chr3L 9080730 intron Tequila + chr3L 9084518 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-88 784 chr3L 9086780 9086788 chr3L 9086881 9086893 6 107 3.5 1.5 2.5 1.7 113 chr3L 9086780 exon Tequila + chr3L 9086836 exon Tequila + chr3L 9086893 exon Tequila + chr3L_6_9085001 chr3L_9085001 RAL-88 785 chr3L 9115243 9115268 chr3L 9115326 9115351 10 82 0.5 1.5 1.0 5.0 108 chr3L 9115243 intron bol - chr3L 9115297 intron bol - chr3L 9115351 intron bol - chr3L_10_9115001 chr3L_9115001 RAL-88 786 chr3L 9129441 9129468 chr3L 9129554 9129581 6 112 1.5 3.5 2.5 1.7 140 chr3L 9129441 intron bol - chr3L 9129511 intron bol - chr3L 9129581 intron bol - chr3L_6_9125001 chr3L_9125001 RAL-88 787 chr3L 9130559 9130580 chr3L 9134320 9134341 412 5 3761 2.0 4.5 3.2 1.2 3782 chr3L 9130559 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134341 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-88 788 chr3L 9164701 9164725 chr3L 9166168 9166192 hobo 5 1467 1.0 1.0 1.0 2.5 1491 chr3L 9164701 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166192 intron Rdl - chr3L_5_9165001 chr3L_9165001 RAL-88 789 chr3L 9172272 9172298 chr3L 9172353 9172378 7 82 3.5 2.0 2.8 1.8 106 chr3L 9172272 intron Rdl - chr3L 9172325 intron Rdl - chr3L 9172378 intron Rdl - chr3L_7_9170001 chr3L_9170001 RAL-88 790 chr3L 9183640 9183650 chr3L 9183710 9183736 6 78 0.5 5.5 3.0 1.5 96 chr3L 9183640 intergenic not near genes chr3L 9183688 intergenic not near genes chr3L 9183736 intergenic not near genes chr3L_6_9180001 chr3L_9180001 RAL-88 791 chr3L 9219244 9219277 chr3L 9219916 9219927 jockey 12 667 4.0 3.0 3.5 2.7 683 chr3L 9219244 intergenic not near genes chr3L 9219586 intergenic not near genes chr3L 9219927 intergenic not near genes chr3L_12_9215001 chr3L_9215001 RAL-88 792 chr3L 9270618 9270650 chr3L 9278373 9278399 roo 8 7753 1.0 2.0 1.5 3.2 7781 chr3L 9270618 intron GluRIB + chr3L 9274508 intron GluRIB + chr3L 9278399 exon GluRIB + chr3L_8_9270001 chr3L_9270001 RAL-88 793 chr3L 9290052 9290063 chr3L 9290128 9290139 4 76 0.0 0.0 0.0 4.0 87 chr3L 9290052 intergenic not near genes chr3L 9290096 intergenic not near genes chr3L 9290139 intergenic not near genes chr3L_4_9290001 chr3L_9290001 RAL-88 794 chr3L 9359594 9359624 chr3L 9359685 9359715 6 91 0.0 0.5 0.2 5.0 121 chr3L 9359594 3` UTR CG32039 + chr3L 9359654 3` UTR CG32039 + chr3L 9359715 3` UTR CG32039 + chr3L_6_9355001 chr3L_9355001 RAL-88 795 chr3L 9567981 9568008 chr3L 9568063 9568082 11 80 0.0 3.0 1.5 4.4 101 chr3L 9567981 intron CG42673 + chr3L 9568032 intron CG42673 + chr3L 9568082 intron CG42673 + chr3L_11_9565001 chr3L_9565001 RAL-88 796 chr3L 9575906 9575937 chr3L 9580983 9581015 jockey 12 5078 4.0 3.0 3.5 2.7 5109 chr3L 9575906 intron CG42673 + chr3L 9578460 intron CG42673 + chr3L 9581015 intron CG42673 + chr3L_12_9575001 chr3L_9575001 RAL-88 797 chr3L 9596780 9596794 chr3L 9596859 9596873 4 79 0.0 5.0 2.5 1.1 93 chr3L 9596780 intergenic CG42673 + chr3L 9596826 intergenic CG42673 + chr3L 9596873 intergenic CG42673 + chr3L_4_9595001 chr3L_9595001 RAL-88 798 chr3L 9637853 9637880 chr3L 9637935 9637962 7 81 3.5 1.5 2.5 2.0 109 chr3L 9637853 intron fry - chr3L 9637908 intron fry - chr3L 9637962 intron fry - chr3L_7_9635001 chr3L_9635001 RAL-88 799 chr3L 9639042 9639062 chr3L 9639127 9639147 4 85 0.0 2.5 1.2 1.8 105 chr3L 9639042 intron fry - chr3L 9639094 intron fry - chr3L 9639147 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-88 800 chr3L 9676180 9676214 chr3L 9676270 9676304 6 89 1.0 0.0 0.5 4.0 124 chr3L 9676180 intron fry - chr3L 9676242 intron fry - chr3L 9676304 intron fry - chr3L_6_9675001 chr3L_9675001 RAL-88 801 chr3L 9775385 9775397 chr3L 9775745 9775756 4 360 0.0 5.5 2.8 1.1 371 chr3L 9775385 intron CG8177 + chr3L 9775570 intron CG8177 + chr3L 9775756 intron CG8177 + chr3L_4_9775001 chr3L_9775001 RAL-88 802 chr3L 9829053 9829079 chr3L 9829135 9829159 6 80 3.0 4.5 3.8 1.2 106 chr3L 9829053 intron CG43897 + chr3L 9829106 intron CG43897 + chr3L 9829159 intron CG43897 + chr3L_6_9825001 chr3L_9825001 RAL-88 803 chr3L 9834754 9834779 chr3L 9834845 9834871 7 91 0.0 5.5 2.8 1.8 117 chr3L 9834754 3` UTR I-2 - chr3L 9834812 3` UTR I-2 - chr3L 9834871 3` UTR I-2 - chr3L_7_9830001 chr3L_9830001 RAL-88 804 chr3L 9929685 9929692 chr3L 9938455 9938471 roo 4 8774 2.0 4.5 3.2 1.0 8786 chr3L 9929685 intron CG34356 + chr3L 9934078 intron CG34356 + chr3L 9938471 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-88 805 chr3L 9951687 9951710 chr3L 9951774 9951796 7 86 5.0 3.0 4.0 1.4 109 chr3L 9951687 intron CG34356 + chr3L 9951742 intron CG34356 + chr3L 9951796 intron CG34356 + chr3L_7_9950001 chr3L_9950001 RAL-88 806 chr3L 9980264 9980292 chr3L 9980354 9980382 5 88 3.5 3.5 3.5 1.1 118 chr3L 9980264 intron dpr6 + chr3L 9980323 intron dpr6 + chr3L 9980382 intron dpr6 + chr3L_5_9980001 chr3L_9980001 RAL-88 807 chr3L 10020884 10020913 chr3L 10020977 10021006 11 92 3.0 4.0 3.5 2.4 122 chr3L 10020884 intron dpr6 + chr3L 10020945 intron dpr6 + chr3L 10021006 intron dpr6 + chr3L_11_10020001 chr3L_10020001 RAL-88 808 chr3L 10118770 10118780 chr3L 10118866 10118885 6 107 4.0 1.0 2.5 1.7 115 chr3L 10118770 intron dpr6 + chr3L 10118828 intron dpr6 + chr3L 10118885 intron dpr6 + chr3L_6_10115001 chr3L_10115001 RAL-88 809 chr3L 10127741 10127759 chr3L 10127815 10127826 6 74 3.0 0.5 1.8 2.1 85 chr3L 10127741 intron dpr6 + chr3L 10127784 intron dpr6 + chr3L 10127826 intron dpr6 + chr3L_6_10125001 chr3L_10125001 RAL-88 810 chr3L 10127760 10127767 chr3L 10127812 10127834 4 63 2.0 0.5 1.2 1.8 74 chr3L 10127760 intron dpr6 + chr3L 10127797 intron dpr6 + chr3L 10127834 intron dpr6 + chr3L_4_10125001 chr3L_10125001 RAL-88 811 chr3L 10214741 10214829 chr3L 10214828 10214930 7 100 0.0 0.0 0.0 7.0 189 chr3L 10214741 intergenic not near genes chr3L 10214836 intergenic not near genes chr3L 10214930 intergenic not near genes chr3L_7_10210001 chr3L_10210001 RAL-88 812 chr3L 10222744 10222777 chr3L 10222824 10222857 4 80 0.0 1.5 0.8 2.2 113 chr3L 10222744 intron scramb1 - chr3L 10222800 intron scramb1 - chr3L 10222857 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-88 813 chr3L 10250343 10250361 chr3L 10250433 10250452 8 88 0.5 5.0 2.8 2.1 109 chr3L 10250343 intergenic not near genes chr3L 10250398 intergenic not near genes chr3L 10250452 intergenic not near genes chr3L_8_10250001 chr3L_10250001 RAL-88 814 chr3L 10298671 10298692 chr3L 10298758 10298778 7 87 0.5 2.0 1.2 3.2 107 chr3L 10298671 intergenic not near genes chr3L 10298724 intergenic not near genes chr3L 10298778 intergenic not near genes chr3L_7_10295001 chr3L_10295001 RAL-88 815 chr3L 10300059 10300061 chr3L 10300151 10300153 4 92 2.0 2.0 2.0 1.3 94 chr3L 10300059 intergenic not near genes chr3L 10300106 intergenic not near genes chr3L 10300153 intergenic not near genes chr3L_4_10300001 chr3L_10300001 RAL-88 816 chr3L 10308741 10308772 chr3L 10308818 10308849 16 76 4.5 0.5 2.5 4.6 108 chr3L 10308741 intergenic not near genes chr3L 10308795 intergenic not near genes chr3L 10308849 intergenic not near genes chr3L_16_10305001 chr3L_10305001 RAL-88 817 chr3L 10348653 10348670 chr3L 10348769 10348787 6 116 2.0 0.0 1.0 3.0 134 chr3L 10348653 intron CR44327 + chr3L 10348720 intron CR44327 + chr3L 10348787 intron CR44327 + chr3L_6_10345001 chr3L_10345001 RAL-88 818 chr3L 10414950 10414971 chr3L 10417321 10417342 Doc 6 2370 1.0 1.0 1.0 3.0 2392 chr3L 10414950 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417342 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-88 819 chr3L 10417569 10417604 chr3L 10417645 10417678 17 76 5.0 2.5 3.8 3.5 109 chr3L 10417569 intergenic not near genes chr3L 10417624 intergenic not near genes chr3L 10417678 intergenic not near genes chr3L_17_10415001 chr3L_10415001 RAL-88 820 chr3L 10551462 10551489 chr3L 10551549 10551576 5 87 0.5 1.0 0.8 2.8 114 chr3L 10551462 intron A2bp1 + chr3L 10551519 intron A2bp1 + chr3L 10551576 intron A2bp1 + chr3L_5_10550001 chr3L_10550001 RAL-88 821 chr3L 10600458 10600465 chr3L 10600540 10600547 4 82 2.5 1.0 1.8 1.4 89 chr3L 10600458 intergenic not near genes chr3L 10600502 intergenic not near genes chr3L 10600547 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-88 822 chr3L 10613179 10613194 chr3L 10613474 10613489 6 295 0.0 1.0 0.5 4.0 310 chr3L 10613179 intergenic not near genes chr3L 10613334 intergenic not near genes chr3L 10613489 intergenic not near genes chr3L_6_10610001 chr3L_10610001 RAL-88 823 chr3L 10658084 10658206 chr3L 10658160 10658333 9 105 0.5 0.5 0.5 6.0 249 chr3L 10658084 intron CG32066 - chr3L 10658208 intron CG32066 - chr3L 10658333 intron CG32066 - chr3L_9_10655001 chr3L_10655001 RAL-88 824 chr3L 10790783 10790799 chr3L 10790880 10790896 5 97 1.0 2.0 1.5 2.0 113 chr3L 10790783 intergenic not near genes chr3L 10790840 intergenic not near genes chr3L 10790896 intergenic not near genes chr3L_5_10790001 chr3L_10790001 RAL-88 825 chr3L 11020312 11020341 chr3L 11020393 11020422 6 81 3.5 0.0 1.8 2.1 110 chr3L 11020312 intergenic not near genes chr3L 11020367 intergenic not near genes chr3L 11020422 intergenic not near genes chr3L_6_11020001 chr3L_11020001 RAL-88 826 chr3L 11083501 11083535 chr3L 11083599 11083633 8 98 1.5 1.5 1.5 3.2 132 chr3L 11083501 intron JIL-1 - chr3L 11083567 intron JIL-1 - chr3L 11083633 intron JIL-1 - chr3L_8_11080001 chr3L_11080001 RAL-88 827 chr3L 11087061 11087090 chr3L 11088850 11088879 S-element 8 1789 0.0 2.0 1.0 4.0 1818 chr3L 11087061 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088879 intron JIL-1 - chr3L_8_11085001 chr3L_11085001 RAL-88 828 chr3L 11135777 11135800 chr3L 11135859 11135885 4 84 0.5 4.5 2.5 1.1 108 chr3L 11135777 intergenic CG32082 +,CG14143 + chr3L 11135831 intergenic CG32082 +,CG14143 + chr3L 11135885 intergenic CG32082 +,CG14143 + chr3L_4_11135001 chr3L_11135001 RAL-88 829 chr3L 11264466 11264490 chr3L 11271414 11271442 17.6 6 6951 3.0 2.5 2.8 1.6 6976 chr3L 11264466 intergenic not near genes chr3L 11267954 intergenic not near genes chr3L 11271442 intergenic not near genes chr3L_6_11265001 chr3L_11265001 RAL-88 830 chr3L 11277457 11277465 chr3L 11278452 11278459 Rt1a 4 995 1.5 2.5 2.0 1.3 1002 chr3L 11277457 intergenic not near genes chr3L 11277958 intergenic not near genes chr3L 11278459 intergenic not near genes chr3L_4_11275001 chr3L_11275001 RAL-88 831 chr3L 11277466 11277485 chr3L 11278451 11278476 Rt1a 7 990 1.5 2.5 2.0 2.3 1010 chr3L 11277466 intergenic not near genes chr3L 11277971 intergenic not near genes chr3L 11278476 intergenic not near genes chr3L_7_11275001 chr3L_11275001 RAL-88 832 chr3L 11279749 11279751 chr3L 11279798 11279814 5 57 1.5 1.0 1.2 2.3 65 chr3L 11279749 intergenic not near genes chr3L 11279782 intergenic not near genes chr3L 11279814 intergenic not near genes chr3L_5_11275001 chr3L_11275001 RAL-88 833 chr3L 11329694 11329717 chr3L 11332899 11332917 jockey 4 3204 9.0 5.0 7.0 0.5 3223 chr3L 11329694 intergenic not near genes chr3L 11331306 intergenic not near genes chr3L 11332917 intergenic not near genes chr3L_4_11330001 chr3L_11330001 RAL-88 834 chr3L 11340526 11340548 chr3L 11340648 11340672 6 122 2.0 2.0 2.0 2.0 146 chr3L 11340526 intergenic not near genes chr3L 11340599 intergenic not near genes chr3L 11340672 intergenic not near genes chr3L_6_11340001 chr3L_11340001 RAL-88 835 chr3L 11435561 11435589 chr3L 11435730 11435758 5 169 2.5 0.0 1.2 2.3 197 chr3L 11435561 intergenic CG6149 -,CR44548 + chr3L 11435660 5` UTR CR44548 + chr3L 11435758 5` UTR CR44548 + chr3L_5_11435001 chr3L_11435001 RAL-88 836 chr3L 11564792 11564813 chr3L 11572417 11572438 412 7 7625 1.5 5.0 3.2 1.7 7646 chr3L 11564792 exon CG33267 + chr3L 11568615 intron CG33267 + chr3L 11572438 exon CG33267 + chr3L_7_11565001 chr3L_11565001 RAL-88 837 chr3L 11579556 11579584 chr3L 11579662 11579690 5 106 2.5 1.0 1.8 1.8 134 chr3L 11579556 intergenic CG43390 - chr3L 11579623 intergenic CG43390 - chr3L 11579690 intergenic CG43390 - chr3L_5_11575001 chr3L_11575001 RAL-88 838 chr3L 11611131 11611143 chr3L 11611634 11611635 4 499 4.5 4.5 4.5 0.7 504 chr3L 11611131 exon Muc68Ca - chr3L 11611383 exon Muc68Ca - chr3L 11611635 exon Muc68Ca - chr3L_4_11610001 chr3L_11610001 RAL-88 839 chr3L 11744014 11744039 chr3L 11744122 11744145 6 107 2.5 0.0 1.2 2.7 131 chr3L 11744014 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744145 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-88 840 chr3L 11757918 11757927 chr3L 11758015 11758023 5 97 4.5 0.0 2.2 1.6 105 chr3L 11757918 intron CG6024 - chr3L 11757970 intron CG6024 - chr3L 11758023 intron CG6024 - chr3L_5_11755001 chr3L_11755001 RAL-88 841 chr3L 11854868 11854887 chr3L 11854969 11854987 10 101 1.5 3.0 2.2 3.1 119 chr3L 11854868 exon CG44837 - chr3L 11854928 intron CG44837 - chr3L 11854987 intron CG44837 - chr3L_10_11850001 chr3L_11850001 RAL-88 842 chr3L 11868165 11868197 chr3L 11868241 11868273 11 75 3.5 0.0 1.8 3.9 108 chr3L 11868165 intron CG44837 - chr3L 11868219 intron CG44837 - chr3L 11868273 intron CG44837 - chr3L_11_11865001 chr3L_11865001 RAL-88 843 chr3L 11961209 11961224 chr3L 11961294 11961321 7 89 3.0 3.0 3.0 1.8 112 chr3L 11961209 exon prc - chr3L 11961265 exon prc - chr3L 11961321 exon prc - chr3L_7_11960001 chr3L_11960001 RAL-88 844 chr3L 12013916 12013938 chr3L 12014007 12014029 5 91 3.5 2.0 2.8 1.3 113 chr3L 12013916 intron rols - chr3L 12013972 intron rols - chr3L 12014029 intron rols - chr3L_5_12010001 chr3L_12010001 RAL-88 845 chr3L 12052714 12052738 chr3L 12052803 12052827 6 89 3.0 2.0 2.5 1.7 113 chr3L 12052714 intron rols - chr3L 12052770 intron rols - chr3L 12052827 intron rols - chr3L_6_12050001 chr3L_12050001 RAL-88 846 chr3L 12170813 12170820 chr3L 12170893 12170902 4 81 0.5 1.5 1.0 2.0 89 chr3L 12170813 intron Rh7 - chr3L 12170858 intron Rh7 - chr3L 12170902 intron Rh7 - chr3L_4_12170001 chr3L_12170001 RAL-88 847 chr3L 12203778 12203804 chr3L 12203856 12203882 6 78 3.0 2.0 2.5 1.7 104 chr3L 12203778 5` UTR Adk1 - chr3L 12203830 5` UTR Adk1 - chr3L 12203882 5` UTR Adk1 - chr3L_6_12200001 chr3L_12200001 RAL-88 848 chr3L 12317430 12317453 chr3L 12317519 12317553 8 98 1.5 2.5 2.0 2.7 123 chr3L 12317430 intergenic not near genes chr3L 12317492 intergenic not near genes chr3L 12317553 intergenic not near genes chr3L_8_12315001 chr3L_12315001 RAL-88 849 chr3L 12353934 12353945 chr3L 12354018 12354034 7 88 2.0 4.0 3.0 1.8 100 chr3L 12353934 intergenic not near genes chr3L 12353984 intergenic not near genes chr3L 12354034 intergenic not near genes chr3L_7_12350001 chr3L_12350001 RAL-88 850 chr3L 12369534 12369564 chr3L 12369624 12369654 7 90 0.5 0.5 0.5 4.7 120 chr3L 12369534 intron Ncc69 - chr3L 12369594 intron Ncc69 - chr3L 12369654 intron Ncc69 - chr3L_7_12365001 chr3L_12365001 RAL-88 851 chr3L 12411031 12411064 chr3L 12411141 12411174 11 110 2.0 1.5 1.8 3.9 143 chr3L 12411031 intron CG32103 - chr3L 12411102 intron CG32103 - chr3L 12411174 intron CG32103 - chr3L_11_12410001 chr3L_12410001 RAL-88 852 chr3L 12440448 12440464 chr3L 12440548 12440562 6 99 5.0 5.0 5.0 1.0 114 chr3L 12440448 intergenic not near genes chr3L 12440505 intergenic not near genes chr3L 12440562 intergenic not near genes chr3L_6_12440001 chr3L_12440001 RAL-88 853 chr3L 12446271 12446299 chr3L 12446349 12446376 5 77 2.5 3.5 3.0 1.2 105 chr3L 12446271 intergenic not near genes chr3L 12446324 intergenic not near genes chr3L 12446376 intergenic not near genes chr3L_5_12445001 chr3L_12445001 RAL-88 854 chr3L 12478575 12478599 chr3L 12478674 12478693 4 98 1.0 2.5 1.8 1.4 118 chr3L 12478575 intron CG10663 - chr3L 12478634 intron CG10663 - chr3L 12478693 intron CG10663 - chr3L_4_12475001 chr3L_12475001 RAL-88 855 chr3L 12647955 12647977 chr3L 12648031 12648052 4 76 2.5 0.5 1.5 1.6 97 chr3L 12647955 5` UTR CR32111 + chr3L 12648004 5` UTR CR32111 + chr3L 12648052 5` UTR CR32111 + chr3L_4_12645001 chr3L_12645001 RAL-88 856 chr3L 12868032 12868054 chr3L 12868116 12868140 4 86 1.0 3.0 2.0 1.3 108 chr3L 12868032 intergenic not near genes chr3L 12868086 intergenic not near genes chr3L 12868140 intergenic not near genes chr3L_4_12865001 chr3L_12865001 RAL-88 857 chr3L 12874927 12874952 chr3L 12877219 12877244 jockey 5 2292 1.5 1.5 1.5 2.0 2317 chr3L 12874927 intergenic not near genes chr3L 12876086 intergenic not near genes chr3L 12877244 intergenic not near genes chr3L_5_12875001 chr3L_12875001 RAL-88 858 chr3L 12894806 12894822 chr3L 12894884 12894899 6 78 7.0 5.0 6.0 0.9 93 chr3L 12894806 intergenic CG14118 + chr3L 12894852 intergenic CG14118 + chr3L 12894899 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 RAL-88 859 chr3L 12919281 12919312 chr3L 12924753 12924775 Rt1c 8 5468 4.5 4.5 4.5 1.5 5494 chr3L 12919281 intergenic not near genes chr3L 12922028 intergenic not near genes chr3L 12924775 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-88 860 chr3L 12957792 12957804 chr3L 12962266 12962278 copia 5 4474 4.0 2.0 3.0 1.2 4486 chr3L 12957792 intergenic not near genes chr3L 12960035 intergenic not near genes chr3L 12962278 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-88 861 chr3L 12977748 12977774 chr3L 12977848 12977877 8 102 2.0 1.0 1.5 3.2 129 chr3L 12977748 intergenic not near genes chr3L 12977812 intergenic not near genes chr3L 12977877 intergenic not near genes chr3L_8_12975001 chr3L_12975001 RAL-88 862 chr3L 12978521 12978548 chr3L 12978603 12978632 4 82 0.0 1.5 0.8 2.2 111 chr3L 12978521 intergenic not near genes chr3L 12978576 intergenic not near genes chr3L 12978632 intergenic not near genes chr3L_4_12975001 chr3L_12975001 RAL-88 863 chr3L 13064646 13064657 chr3L 13064727 13064747 4 87 3.0 5.5 4.2 0.8 101 chr3L 13064646 intergenic not near genes chr3L 13064696 intergenic not near genes chr3L 13064747 intergenic not near genes chr3L_4_13060001 chr3L_13060001 RAL-88 864 chr3L 13095822 13095838 chr3L 13095910 13095926 4 88 0.5 0.0 0.2 3.3 104 chr3L 13095822 intergenic not near genes chr3L 13095874 intergenic not near genes chr3L 13095926 intergenic not near genes chr3L_4_13095001 chr3L_13095001 RAL-88 865 chr3L 13144116 13144146 chr3L 13144192 13144223 5 76 0.0 1.0 0.5 3.3 107 chr3L 13144116 intergenic not near genes chr3L 13144170 intergenic not near genes chr3L 13144223 intergenic not near genes chr3L_5_13140001 chr3L_13140001 RAL-88 866 chr3L 13206237 13206260 chr3L 13206318 13206341 7 82 3.0 3.0 3.0 1.8 104 chr3L 13206237 intergenic not near genes chr3L 13206289 intergenic not near genes chr3L 13206341 intergenic not near genes chr3L_7_13205001 chr3L_13205001 RAL-88 867 chr3L 13254069 13254101 chr3L 13254195 13254227 10 125 2.5 4.5 3.5 2.2 158 chr3L 13254069 intron caps + chr3L 13254148 intron caps + chr3L 13254227 intron caps + chr3L_10_13250001 chr3L_13250001 RAL-88 868 chr3L 13267284 13267307 chr3L 13267396 13267420 8 113 6.0 0.5 3.2 1.9 136 chr3L 13267284 intron caps + chr3L 13267352 intron caps + chr3L 13267420 intron caps + chr3L_8_13265001 chr3L_13265001 RAL-88 869 chr3L 13525164 13525182 chr3L 13532959 13532978 roo 5 7795 2.0 3.0 2.5 1.4 7814 chr3L 13525164 intergenic not near genes chr3L 13529071 intergenic not near genes chr3L 13532978 intergenic not near genes chr3L_5_13525001 chr3L_13525001 RAL-88 870 chr3L 13626690 13626720 chr3L 13626773 13626804 8 84 3.5 2.0 2.8 2.1 114 chr3L 13626690 intron bru-3 - chr3L 13626747 intron bru-3 - chr3L 13626804 intron bru-3 - chr3L_8_13625001 chr3L_13625001 RAL-88 871 chr3L 13629531 13629542 chr3L 13629640 13629653 5 111 4.5 6.5 5.5 0.8 122 chr3L 13629531 intron bru-3 - chr3L 13629592 intron bru-3 - chr3L 13629653 intron bru-3 - chr3L_5_13625001 chr3L_13625001 RAL-88 872 chr3L 13633414 13633443 chr3L 13633768 13633793 7 353 0.0 1.0 0.5 4.7 379 chr3L 13633414 intron bru-3 - chr3L 13633604 intron bru-3 - chr3L 13633793 intron bru-3 - chr3L_7_13630001 chr3L_13630001 RAL-88 873 chr3L 13648890 13648920 chr3L 13648978 13649010 14 88 2.0 4.0 3.0 3.5 120 chr3L 13648890 intron bru-3 - chr3L 13648950 intron bru-3 - chr3L 13649010 intron bru-3 - chr3L_14_13645001 chr3L_13645001 RAL-88 874 chr3L 13774637 13774669 chr3L 13774723 13774755 14 85 1.0 1.0 1.0 7.0 118 chr3L 13774637 intron bru-3 - chr3L 13774696 intron bru-3 - chr3L 13774755 intron bru-3 - chr3L_14_13770001 chr3L_13770001 RAL-88 875 chr3L 13804545 13804577 chr3L 13822829 13822863 roo 5 18286 1.5 1.0 1.2 2.3 18318 chr3L 13804545 intergenic not near genes chr3L 13813704 intergenic not near genes chr3L 13822863 intergenic not near genes chr3L_5_13810001 chr3L_13810001 RAL-88 876 chr3L 13833975 13834007 chr3L 13834087 13834121 4 108 2.0 1.0 1.5 1.6 146 chr3L 13833975 intergenic not near genes chr3L 13834048 intergenic not near genes chr3L 13834121 intergenic not near genes chr3L_4_13830001 chr3L_13830001 RAL-88 877 chr3L 13838939 13838955 chr3L 13839158 13839174 4 216 1.0 1.0 1.0 2.0 235 chr3L 13838939 intergenic not near genes chr3L 13839056 intergenic not near genes chr3L 13839174 intergenic not near genes chr3L_4_13835001 chr3L_13835001 RAL-88 878 chr3L 13947496 13947525 chr3L 13947576 13947605 9 80 1.0 1.0 1.0 4.5 109 chr3L 13947496 intron CG32137 + chr3L 13947550 intron CG32137 + chr3L 13947605 intron CG32137 + chr3L_9_13945001 chr3L_13945001 RAL-88 879 chr3L 14356520 14356549 chr3L 14356598 14356629 12 78 2.0 1.5 1.8 4.3 109 chr3L 14356520 intron fz + chr3L 14356574 intron fz + chr3L 14356629 intron fz + chr3L_12_14355001 chr3L_14355001 RAL-88 880 chr3L 14358691 14358697 chr3L 14358770 14358776 5 79 4.0 0.0 2.0 1.7 85 chr3L 14358691 intron fz + chr3L 14358734 intron fz + chr3L 14358776 intron fz + chr3L_5_14355001 chr3L_14355001 RAL-88 881 chr3L 14468450 14468471 chr3L 14473656 14473665 copia 4 5203 3.5 1.0 2.2 1.2 5215 chr3L 14468450 intron bbg - chr3L 14471058 intron bbg - chr3L 14473665 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-88 882 chr3L 14693306 14693325 chr3L 14693588 14693606 6 282 1.0 4.0 2.5 1.7 300 chr3L 14693306 intron ome + chr3L 14693456 intron ome + chr3L 14693606 intron ome + chr3L_6_14690001 chr3L_14690001 RAL-88 883 chr3L 14924181 14924198 chr3L 14924989 14925009 5 809 3.5 0.5 2.0 1.7 828 chr3L 14924181 intron DCX-EMAP + chr3L 14924595 intron DCX-EMAP + chr3L 14925009 intron DCX-EMAP + chr3L_5_14920001 chr3L_14920001 RAL-88 884 chr3L 15017715 15017748 chr3L 15017820 15017853 4 105 2.5 1.0 1.8 1.4 138 chr3L 15017715 intron Sytbeta - chr3L 15017784 intron Sytbeta - chr3L 15017853 intron Sytbeta - chr3L_4_15015001 chr3L_15015001 RAL-88 885 chr3L 15085050 15085081 chr3L 15086216 15086246 1360 5 1165 1.5 1.5 1.5 2.0 1196 chr3L 15085050 intron cp309 - chr3L 15085648 intron cp309 - chr3L 15086246 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-88 886 chr3L 15278209 15278229 chr3L 15278304 15278324 4 94 5.5 3.0 4.2 0.8 115 chr3L 15278209 intergenic not near genes chr3L 15278266 intergenic not near genes chr3L 15278324 intergenic not near genes chr3L_4_15275001 chr3L_15275001 RAL-88 887 chr3L 15369248 15369267 chr3L 15369367 15369386 7 119 4.5 2.0 3.2 1.7 138 chr3L 15369248 intergenic not near genes chr3L 15369317 intergenic not near genes chr3L 15369386 intergenic not near genes chr3L_7_15365001 chr3L_15365001 RAL-88 888 chr3L 15381160 15381186 chr3L 15381473 15381499 7 313 2.0 0.5 1.2 3.2 339 chr3L 15381160 intergenic not near genes chr3L 15381330 intergenic not near genes chr3L 15381499 intergenic not near genes chr3L_7_15380001 chr3L_15380001 RAL-88 889 chr3L 15384958 15384988 chr3L 15385086 15385106 6 126 0.5 1.0 0.8 3.3 148 chr3L 15384958 intergenic not near genes chr3L 15385032 intergenic not near genes chr3L 15385106 intergenic not near genes chr3L_6_15385001 chr3L_15385001 RAL-88 890 chr3L 15406023 15406051 chr3L 15406106 15406134 8 81 2.5 1.5 2.0 2.7 111 chr3L 15406023 intergenic not near genes chr3L 15406078 intergenic not near genes chr3L 15406134 intergenic not near genes chr3L_8_15405001 chr3L_15405001 RAL-88 891 chr3L 15423764 15423778 chr3L 15426608 15426622 opus 4 2844 1.0 4.0 2.5 1.1 2858 chr3L 15423764 intergenic not near genes chr3L 15425193 intergenic not near genes chr3L 15426622 intergenic not near genes chr3L_4_15425001 chr3L_15425001 RAL-88 892 chr3L 15896097 15896111 chr3L 15896186 15896200 5 88 3.0 0.5 1.8 1.8 103 chr3L 15896097 intron pHCl - chr3L 15896148 intron pHCl - chr3L 15896200 intron pHCl - chr3L_5_15895001 chr3L_15895001 RAL-88 893 chr3L 15899233 15899252 chr3L 15899791 15899793 jockey 4 557 1.5 4.5 3.0 1.0 560 chr3L 15899233 intergenic pHCl - chr3L 15899513 intergenic pHCl - chr3L 15899793 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-88 894 chr3L 16149201 16149232 chr3L 16149290 16149321 6 88 1.0 0.5 0.8 3.3 120 chr3L 16149201 intron CG5151 - chr3L 16149261 intron CG5151 - chr3L 16149321 intron CG5151 - chr3L_6_16145001 chr3L_16145001 RAL-88 895 chr3L 16184107 16184139 chr3L 16188926 16188957 X-element 10 4819 1.0 3.0 2.0 3.3 4850 chr3L 16184107 intergenic not near genes chr3L 16186532 intergenic not near genes chr3L 16188957 intergenic not near genes chr3L_10_16185001 chr3L_16185001 RAL-88 896 chr3L 16194337 16194356 chr3L 16194423 16194439 6 82 4.5 7.0 5.8 0.9 102 chr3L 16194337 intergenic not near genes chr3L 16194388 intergenic not near genes chr3L 16194439 intergenic not near genes chr3L_6_16190001 chr3L_16190001 RAL-88 897 chr3L 16437066 16437104 chr3L 16437145 16437190 9 84 1.0 0.0 0.5 6.0 124 chr3L 16437066 intron,intron CG33158 +,dsx-c73A - chr3L 16437128 intron,intron CG33158 +,dsx-c73A - chr3L 16437190 intron,intron CG33158 +,dsx-c73A - chr3L_9_16435001 chr3L_16435001 RAL-88 898 chr3L 16443860 16443877 chr3L 16446200 16446217 Doc 4 2340 1.0 5.0 3.0 1.0 2357 chr3L 16443860 intron,intron CG33158 +,dsx-c73A - chr3L 16445038 intron,intron CG33158 +,dsx-c73A - chr3L 16446217 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-88 899 chr3L 16450019 16450053 chr3L 16450104 16450138 4 85 0.5 2.5 1.5 1.6 119 chr3L 16450019 intron,intron CG33158 +,dsx-c73A - chr3L 16450078 intron,intron CG33158 +,dsx-c73A - chr3L 16450138 intron,intron CG33158 +,dsx-c73A - chr3L_4_16450001 chr3L_16450001 RAL-88 900 chr3L 16457537 16457553 chr3L 16457632 16457648 4 95 3.0 2.0 2.5 1.1 111 chr3L 16457537 intron CG33158 + chr3L 16457592 intron CG33158 + chr3L 16457648 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-88 901 chr3L 16462735 16462765 chr3L 16462829 16462856 4 93 0.0 1.0 0.5 2.7 121 chr3L 16462735 intron CG33158 + chr3L 16462796 intron CG33158 + chr3L 16462856 intron CG33158 + chr3L_4_16460001 chr3L_16460001 RAL-88 902 chr3L 16493976 16494013 chr3L 16494492 16494529 jockey 12 515 2.0 4.0 3.0 3.0 553 chr3L 16493976 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494529 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_12_16490001 chr3L_16490001 RAL-88 903 chr3L 16498529 16498550 chr3L 16498637 16498658 4 108 2.0 0.0 1.0 2.0 129 chr3L 16498529 intron,exon CG43373 -,st + chr3L 16498594 intron,intron CG43373 -,st + chr3L 16498658 intron,intron CG43373 -,st + chr3L_4_16495001 chr3L_16495001 RAL-88 904 chr3L 16786992 16786999 chr3L 16787052 16787075 5 73 0.0 3.0 1.5 2.0 83 chr3L 16786992 intergenic Int6 - chr3L 16787034 intergenic Int6 - chr3L 16787075 intergenic Int6 -,CG9674 - chr3L_5_16785001 chr3L_16785001 RAL-88 905 chr3L 16818747 16818779 chr3L 16818823 16818855 8 76 0.0 1.5 0.8 4.4 108 chr3L 16818747 intron,intron nudC +,CG13024 - chr3L 16818801 intron,intron nudC +,CG13024 - chr3L 16818855 intron,intron nudC +,CG13024 - chr3L_8_16815001 chr3L_16815001 RAL-88 906 chr3L 16845021 16845040 chr3L 16845134 16845152 4 112 4.0 1.0 2.5 1.1 131 chr3L 16845021 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845086 intergenic CG9669 -,CG9715 + chr3L 16845152 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-88 907 chr3L 16869583 16869599 chr3L 16869660 16869682 4 81 3.0 1.5 2.2 1.2 99 chr3L 16869583 intron Lmpt + chr3L 16869632 intron Lmpt + chr3L 16869682 intron Lmpt + chr3L_4_16865001 chr3L_16865001 RAL-88 908 chr3L 16886955 16886969 chr3L 16887033 16887047 4 78 0.0 2.0 1.0 2.0 92 chr3L 16886955 intron Lmpt + chr3L 16887001 intron Lmpt + chr3L 16887047 intron Lmpt + chr3L_4_16885001 chr3L_16885001 RAL-88 909 chr3L 16945729 16945757 chr3L 16954882 16954910 roo 8 9148 5.0 3.5 4.2 1.5 9181 chr3L 16945729 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954910 5` UTR Nc73EF + chr3L_8_16950001 chr3L_16950001 RAL-88 910 chr3L 17085014 17085036 chr3L 17094163 17094185 roo 5 9149 2.0 2.5 2.2 1.6 9171 chr3L 17085014 intron Rbp6 - chr3L 17089600 intron Rbp6 - chr3L 17094185 intron Rbp6 - chr3L_5_17085001 chr3L_17085001 RAL-88 911 chr3L 17113873 17113891 chr3L 17113957 17113976 8 84 5.5 1.5 3.5 1.8 103 chr3L 17113873 intron Rbp6 - chr3L 17113924 intron Rbp6 - chr3L 17113976 intron Rbp6 - chr3L_8_17110001 chr3L_17110001 RAL-88 912 chr3L 17120653 17120679 chr3L 17120729 17120755 5 76 3.5 3.5 3.5 1.1 102 chr3L 17120653 intron Rbp6 - chr3L 17120704 intron Rbp6 - chr3L 17120755 intron Rbp6 - chr3L_5_17120001 chr3L_17120001 RAL-88 913 chr3L 17149175 17149185 chr3L 17149256 17149266 5 81 1.0 0.0 0.5 3.3 91 chr3L 17149175 intron Rbp6 - chr3L 17149220 intron Rbp6 - chr3L 17149266 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-88 914 chr3L 17153894 17153920 chr3L 17154139 17154165 11 244 2.0 0.5 1.2 5.0 271 chr3L 17153894 intron Rbp6 - chr3L 17154030 intron Rbp6 - chr3L 17154165 intron Rbp6 - chr3L_11_17150001 chr3L_17150001 RAL-88 915 chr3L 17309089 17309103 chr3L 17309154 17309186 6 78 1.5 3.5 2.5 1.7 97 chr3L 17309089 intergenic not near genes chr3L 17309138 intergenic not near genes chr3L 17309186 intergenic not near genes chr3L_6_17305001 chr3L_17305001 RAL-88 916 chr3L 17367438 17367460 chr3L 17367532 17367554 4 94 1.5 2.5 2.0 1.3 116 chr3L 17367438 intergenic CR45688 +,Cad74A - chr3L 17367496 intergenic CR45688 +,Cad74A - chr3L 17367554 intergenic CR45688 +,Cad74A - chr3L_4_17365001 chr3L_17365001 RAL-88 917 chr3L 17510732 17510759 chr3L 17510816 17510843 7 84 3.5 1.0 2.2 2.2 111 chr3L 17510732 exon Oatp74D + chr3L 17510788 intron Oatp74D + chr3L 17510843 intron Oatp74D + chr3L_7_17510001 chr3L_17510001 RAL-88 918 chr3L 17516979 17517010 chr3L 17524536 17524568 412 12 7556 1.0 2.0 1.5 4.8 7589 chr3L 17516979 intron CG7564 + chr3L 17520774 intron CG7564 + chr3L 17524568 3` UTR CG7564 + chr3L_12_17520001 chr3L_17520001 RAL-88 919 chr3L 17789844 17789877 chr3L 17789920 17789953 5 76 0.0 0.5 0.2 4.2 109 chr3L 17789844 intergenic not near genes chr3L 17789898 intergenic not near genes chr3L 17789953 intergenic not near genes chr3L_5_17785001 chr3L_17785001 RAL-88 920 chr3L 17918373 17918401 chr3L 17921175 17921204 opus 4 2802 2.5 2.5 2.5 1.1 2831 chr3L 17918373 intergenic not near genes chr3L 17919788 intergenic not near genes chr3L 17921204 intergenic not near genes chr3L_4_17915001 chr3L_17915001 RAL-88 921 chr3L 17957054 17957080 chr3L 17957143 17957170 10 90 2.0 2.0 2.0 3.3 116 chr3L 17957054 intron Eip75B - chr3L 17957112 intron Eip75B - chr3L 17957170 intron Eip75B - chr3L_10_17955001 chr3L_17955001 RAL-88 922 chr3L 17968136 17968169 chr3L 17968217 17968250 4 80 0.5 1.5 1.0 2.0 114 chr3L 17968136 intron Eip75B - chr3L 17968193 intron Eip75B - chr3L 17968250 intron Eip75B - chr3L_4_17965001 chr3L_17965001 RAL-88 923 chr3L 17991574 17991588 chr3L 17991652 17991666 6 78 3.5 5.0 4.2 1.2 92 chr3L 17991574 intron Eip75B - chr3L 17991620 intron Eip75B - chr3L 17991666 intron Eip75B - chr3L_6_17990001 chr3L_17990001 RAL-88 924 chr3L 18000672 18000707 chr3L 18000749 18000784 7 77 2.0 4.0 3.0 1.8 112 chr3L 18000672 intron Eip75B - chr3L 18000728 intron Eip75B - chr3L 18000784 intron Eip75B - chr3L_7_18000001 chr3L_18000001 RAL-88 925 chr3L 18092134 18092142 chr3L 18092216 18092224 4 81 0.0 2.5 1.2 1.8 90 chr3L 18092134 intron CG13698 - chr3L 18092179 intron CG13698 - chr3L 18092224 intron CG13698 - chr3L_4_18090001 chr3L_18090001 RAL-88 926 chr3L 18135698 18135705 chr3L 18135789 18135796 4 91 2.5 0.0 1.2 1.8 98 chr3L 18135698 intergenic CR44669 - chr3L 18135747 intergenic CR44669 - chr3L 18135796 3` UTR CR44669 - chr3L_4_18135001 chr3L_18135001 RAL-88 927 chr3L 18175823 18175838 chr3L 18176058 18176077 4 238 0.5 1.5 1.0 2.0 254 chr3L 18175823 intron W - chr3L 18175950 intron W - chr3L 18176077 intron W - chr3L_4_18175001 chr3L_18175001 RAL-88 928 chr3L 18225283 18225303 chr3L 18225359 18225379 6 76 0.0 0.0 0.0 6.0 96 chr3L 18225283 intergenic not near genes chr3L 18225331 intergenic not near genes chr3L 18225379 intergenic not near genes chr3L_6_18225001 chr3L_18225001 RAL-88 929 chr3L 18248952 18248981 chr3L 18249050 18249079 5 98 0.5 3.0 1.8 1.8 127 chr3L 18248952 intergenic not near genes chr3L 18249016 intergenic not near genes chr3L 18249079 intergenic not near genes chr3L_5_18245001 chr3L_18245001 RAL-88 930 chr3L 18420067 18420094 chr3L 18420149 18420178 6 83 1.0 2.5 1.8 2.1 111 chr3L 18420067 intergenic not near genes chr3L 18420122 intergenic not near genes chr3L 18420178 intergenic not near genes chr3L_6_18420001 chr3L_18420001 RAL-88 931 chr3L 18579566 18579600 chr3L 18579694 18579728 4 128 1.0 2.5 1.8 1.4 162 chr3L 18579566 intergenic not near genes chr3L 18579647 intergenic not near genes chr3L 18579728 intergenic not near genes chr3L_4_18575001 chr3L_18575001 RAL-88 932 chr3L 18656183 18656211 chr3L 18656267 18656295 7 85 3.5 3.0 3.2 1.7 112 chr3L 18656183 intron MYPT-75D + chr3L 18656239 intron MYPT-75D + chr3L 18656295 intron MYPT-75D + chr3L_7_18655001 chr3L_18655001 RAL-88 933 chr3L 18721771 18721802 chr3L 18721861 18721893 8 90 4.5 1.0 2.8 2.1 122 chr3L 18721771 intergenic CG12477 - chr3L 18721832 intergenic CG12477 - chr3L 18721893 3` UTR CG12477 - chr3L_8_18720001 chr3L_18720001 RAL-88 934 chr3L 18738666 18738692 chr3L 18738754 18738779 6 88 1.0 2.5 1.8 2.1 113 chr3L 18738666 intergenic not near genes chr3L 18738722 intergenic not near genes chr3L 18738779 intergenic not near genes chr3L_6_18735001 chr3L_18735001 RAL-88 935 chr3L 18772409 18772427 chr3L 18781090 18781105 roo 4 8680 3.5 3.0 3.2 1.0 8696 chr3L 18772409 intron ftz-f1 - chr3L 18776757 intron ftz-f1 - chr3L 18781105 intron ftz-f1 - chr3L_4_18775001 chr3L_18775001 RAL-88 936 chr3L 18857014 18857019 chr3L 18857096 18857101 4 82 1.0 4.5 2.8 1.1 87 chr3L 18857014 5` UTR CR45388 + chr3L 18857058 5` UTR CR45388 + chr3L 18857101 5` UTR CR45388 + chr3L_4_18855001 chr3L_18855001 RAL-88 937 chr3L 18935834 18935865 chr3L 18935923 18935954 4 89 0.5 0.5 0.5 2.7 120 chr3L 18935834 intron CG32204 - chr3L 18935894 intron CG32204 - chr3L 18935954 intron CG32204 - chr3L_4_18935001 chr3L_18935001 RAL-88 938 chr3L 19008860 19008870 chr3L 19009195 19009208 jockey 5 337 2.0 6.5 4.2 1.0 348 chr3L 19008860 intron nkd - chr3L 19009034 intron nkd - chr3L 19009208 intron nkd - chr3L_5_19005001 chr3L_19005001 RAL-88 939 chr3L 19115641 19115667 chr3L 19115821 19115847 BS 7 180 3.0 2.5 2.8 1.8 206 chr3L 19115641 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115847 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-88 940 chr3L 19117042 19117076 chr3L 19124488 19124523 mdg1 9 7446 1.0 2.5 1.8 3.2 7481 chr3L 19117042 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_9_19120001 chr3L_19120001 RAL-88 941 chr3L 19182385 19182418 chr3L 19182466 19182499 7 81 0.0 2.5 1.2 3.2 114 chr3L 19182385 intron fz2 - chr3L 19182442 intron fz2 - chr3L 19182499 intron fz2 - chr3L_7_19180001 chr3L_19180001 RAL-88 942 chr3L 19208056 19208086 chr3L 19209430 19209455 Doc 10 1373 2.5 3.5 3.0 2.5 1399 chr3L 19208056 intron fz2 - chr3L 19208756 intron fz2 - chr3L 19209455 intron fz2 - chr3L_10_19205001 chr3L_19205001 RAL-88 943 chr3L 19269816 19269849 chr3L 19270020 19270053 11 200 3.0 6.0 4.5 2.0 237 chr3L 19269816 intron,exon CG14085 +,CG14088 - chr3L 19269934 intron,exon CG14085 +,CG14088 - chr3L 19270053 intron,exon CG14085 +,CG14088 - chr3L_11_19265001 chr3L_19265001 RAL-88 944 chr3L 19267485 19267501 chr3L 19284395 19284410 4 16910 21.0 19.5 20.2 0.2 16925 chr3L 19267485 exon CG9629 - chr3L 19275948 5` UTR CG14086 + chr3L 19284410 exon Gbs-76A - chr3L_4_19275001 chr3L_19275001 RAL-88 945 chr3L 19325403 19325432 chr3L 19325480 19325490 5 73 2.0 5.5 3.8 1.0 87 chr3L 19325403 intron pip - chr3L 19325446 intron pip - chr3L 19325490 intron pip - chr3L_5_19325001 chr3L_19325001 RAL-88 946 chr3L 19417803 19417818 chr3L 19417883 19417891 8 78 5.0 2.0 3.5 1.8 88 chr3L 19417803 intergenic not near genes chr3L 19417847 intergenic not near genes chr3L 19417891 intergenic not near genes chr3L_8_19415001 chr3L_19415001 RAL-88 947 chr3L 19426750 19426781 chr3L 19426828 19426859 14 76 3.5 4.0 3.8 2.9 109 chr3L 19426750 intergenic not near genes chr3L 19426804 intergenic not near genes chr3L 19426859 intergenic not near genes chr3L_14_19425001 chr3L_19425001 RAL-88 948 chr3L 19487703 19487733 chr3L 19487783 19487813 9 79 4.0 4.5 4.2 1.7 110 chr3L 19487703 3` UTR,5` UTR pncr009:3L -,CG32212 + chr3L 19487758 3` UTR,5` UTR pncr009:3L -,CG32212 + chr3L 19487813 intron,5` UTR pncr009:3L -,CG32212 + chr3L_9_19485001 chr3L_19485001 RAL-88 949 chr3L 19493902 19493930 chr3L 19494260 19494288 10 358 1.5 2.5 2.0 3.3 386 chr3L 19493902 intron CG9449 - chr3L 19494095 intron CG9449 - chr3L 19494288 intron CG9449 - chr3L_10_19490001 chr3L_19490001 RAL-88 950 chr3L 19495922 19495941 chr3L 19496274 19496294 6 352 1.5 2.0 1.8 2.1 372 chr3L 19495922 intron CG9449 - chr3L 19496108 intron CG9449 - chr3L 19496294 intron CG9449 - chr3L_6_19495001 chr3L_19495001 RAL-88 951 chr3L 19845744 19845764 chr3L 19845831 19845851 6 87 2.5 2.5 2.5 1.7 107 chr3L 19845744 intron Papss + chr3L 19845798 intron Papss + chr3L 19845851 intron Papss + chr3L_6_19845001 chr3L_19845001 RAL-88 952 chr3L 19848506 19848533 chr3L 19857695 19857723 roo 11 9190 4.0 5.0 4.5 2.0 9217 chr3L 19848506 intron Papss + chr3L 19853114 intron Papss + chr3L 19857723 intron Papss + chr3L_11_19850001 chr3L_19850001 RAL-88 953 chr3L 19861823 19861853 chr3L 19863611 19863641 S-element 5 1788 2.5 4.0 3.2 1.2 1818 chr3L 19861823 5` UTR CR45433 + chr3L 19862732 intergenic not near genes chr3L 19863641 intergenic not near genes chr3L_5_19860001 chr3L_19860001 RAL-88 954 chr3L 19961281 19961300 chr3L 19961492 19961511 6 211 3.0 3.5 3.2 1.4 230 chr3L 19961281 intron Ac76E + chr3L 19961396 intron Ac76E + chr3L 19961511 intron Ac76E + chr3L_6_19960001 chr3L_19960001 RAL-88 955 chr3L 19981212 19981236 chr3L 19981292 19981315 7 79 1.5 2.0 1.8 2.5 103 chr3L 19981212 intergenic CG17732 + chr3L 19981264 intergenic CG17732 + chr3L 19981315 intergenic CG17732 + chr3L_7_19980001 chr3L_19980001 RAL-88 956 chr3L 20038820 20038851 chr3L 20038998 20039028 4 178 1.5 1.0 1.2 1.8 208 chr3L 20038820 intergenic not near genes chr3L 20038924 intergenic not near genes chr3L 20039028 intergenic not near genes chr3L_4_20035001 chr3L_20035001 RAL-88 957 chr3L 20057562 20057585 chr3L 20057674 20057698 5 112 3.0 1.5 2.2 1.6 136 chr3L 20057562 intergenic not near genes chr3L 20057630 intergenic not near genes chr3L 20057698 intergenic not near genes chr3L_5_20055001 chr3L_20055001 RAL-88 958 chr3L 20081752 20081767 chr3L 20081835 20081850 6 83 1.0 1.5 1.2 2.7 98 chr3L 20081752 intron sNPF-R - chr3L 20081801 intron sNPF-R - chr3L 20081850 intron sNPF-R - chr3L_6_20080001 chr3L_20080001 RAL-88 959 chr3L 20113475 20113506 chr3L 20113570 20113601 4 95 1.0 0.0 0.5 2.7 126 chr3L 20113475 intergenic not near genes chr3L 20113538 intergenic not near genes chr3L 20113601 intergenic not near genes chr3L_4_20110001 chr3L_20110001 RAL-88 960 chr3L 20143080 20143108 chr3L 20143160 20143188 7 80 3.0 3.5 3.2 1.7 108 chr3L 20143080 intergenic not near genes chr3L 20143134 intergenic not near genes chr3L 20143188 intergenic not near genes chr3L_7_20140001 chr3L_20140001 RAL-88 961 chr3L 20257338 20257358 chr3L 20258458 20258478 pogo 5 1120 1.5 3.0 2.2 1.6 1140 chr3L 20257338 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258478 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-88 962 chr3L 20283676 20283698 chr3L 20283760 20283781 4 84 1.5 2.5 2.0 1.3 105 chr3L 20283676 intron gogo - chr3L 20283728 intron gogo - chr3L 20283781 intron gogo - chr3L_4_20280001 chr3L_20280001 RAL-88 963 chr3L 20476752 20476777 chr3L 20484351 20484367 springer 4 7597 1.0 2.5 1.8 1.4 7615 chr3L 20476752 3` UTR isoQC + chr3L 20480560 intergenic not near genes chr3L 20484367 3` UTR ZnT77C - chr3L_4_20480001 chr3L_20480001 RAL-88 964 chr3L 20821300 20821310 chr3L 20824740 20824779 NOF 4 3462 2.0 0.5 1.2 1.8 3479 chr3L 20821300 intron Pka-R1 + chr3L 20823040 intron Pka-R1 + chr3L 20824779 intron Pka-R1 + chr3L_4_20820001 chr3L_20820001 RAL-88 965 chr3L 20939303 20939321 chr3L 20939384 20939402 4 81 6.0 5.5 5.8 0.6 99 chr3L 20939303 intron fng - chr3L 20939352 intron fng - chr3L 20939402 intron fng - chr3L_4_20935001 chr3L_20935001 RAL-88 966 chr3L 21014917 21014943 chr3L 21023394 21023411 Tirant 5 8476 1.5 2.5 2.0 1.7 8494 chr3L 21014917 intron skd - chr3L 21019164 intron skd - chr3L 21023411 intron skd - chr3L_5_21015001 chr3L_21015001 RAL-88 967 chr3L 21057143 21057162 chr3L 21057359 21057378 4 216 7.0 3.5 5.2 0.6 235 chr3L 21057143 intron siz + chr3L 21057260 intron siz + chr3L 21057378 intron siz + chr3L_4_21055001 chr3L_21055001 RAL-88 968 chr3L 21082210 21082240 chr3L 21082288 21082318 14 78 1.0 1.0 1.0 7.0 108 chr3L 21082210 intron ko - chr3L 21082264 intron ko - chr3L 21082318 intron ko - chr3L_14_21080001 chr3L_21080001 RAL-88 969 chr3L 21130570 21130600 chr3L 21130764 21130794 5 194 5.0 4.5 4.8 0.9 224 chr3L 21130570 intron ko - chr3L 21130682 intron ko - chr3L 21130794 intron ko - chr3L_5_21130001 chr3L_21130001 RAL-88 970 chr3L 21160963 21160993 chr3L 21161058 21161088 6 96 7.0 5.0 6.0 0.9 125 chr3L 21160963 5` UTR Ac78C - chr3L 21161026 intron Ac78C - chr3L 21161088 intron Ac78C - chr3L_6_21160001 chr3L_21160001 RAL-88 971 chr3L 21362850 21362884 chr3L 21362934 21362968 5 84 6.5 3.5 5.0 0.8 118 chr3L 21362850 intergenic not near genes chr3L 21362909 intergenic not near genes chr3L 21362968 intergenic not near genes chr3L_5_21360001 chr3L_21360001 RAL-88 972 chr3L 21395144 21395177 chr3L 21395232 21395265 5 88 7.0 3.5 5.2 0.8 121 chr3L 21395144 intron rgn + chr3L 21395204 intron rgn + chr3L 21395265 intron rgn + chr3L_5_21395001 chr3L_21395001 RAL-88 973 chr3L 21498834 21498858 chr3L 21500470 21500494 1360 7 1633 2.5 5.0 3.8 1.5 1660 chr3L 21498834 intron Glg1 - chr3L 21499664 intron Glg1 - chr3L 21500494 intron Glg1 - chr3L_7_21495001 chr3L_21495001 RAL-88 974 chr3L 21749317 21749337 chr3L 21754474 21754495 Doc 5 5159 4.5 1.0 2.8 1.3 5178 chr3L 21749317 intron Syn1 - chr3L 21751906 intron Syn1 - chr3L 21754495 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-88 975 chr3L 21787612 21787635 chr3L 21787690 21787712 5 78 8.5 9.0 8.8 0.5 100 chr3L 21787612 intergenic not near genes chr3L 21787662 intergenic not near genes chr3L 21787712 intergenic not near genes chr3L_5_21785001 chr3L_21785001 RAL-88 976 chr3L 21799940 21799966 chr3L 21800025 21800051 4 85 9.5 9.0 9.2 0.4 111 chr3L 21799940 intergenic not near genes chr3L 21799996 intergenic not near genes chr3L 21800051 intergenic not near genes chr3L_4_21795001 chr3L_21795001 RAL-88 977 chr3L 21872425 21872448 chr3L 21872504 21872527 5 79 3.0 5.0 4.0 1.0 102 chr3L 21872425 intron mub + chr3L 21872476 intron mub + chr3L 21872527 intron mub + chr3L_5_21870001 chr3L_21870001 RAL-88 978 chr3L 21886392 21886410 chr3L 21886475 21886491 4 82 10.0 6.5 8.2 0.4 99 chr3L 21886392 intron,intron mub +,CR43878 - chr3L 21886442 intron,intron mub +,CR43878 - chr3L 21886491 intron,intron mub +,CR43878 - chr3L_4_21885001 chr3L_21885001 RAL-88 979 chr3L 21950335 21950355 chr3L 21950412 21950432 6 76 10.0 11.5 10.8 0.5 97 chr3L 21950335 exon CG7448 + chr3L 21950384 exon CG7448 + chr3L 21950432 intron CG7448 + chr3L_6_21950001 chr3L_21950001 RAL-88 980 chr3L 21994437 21994469 chr3L 21994518 21994550 9 81 0.5 3.0 1.8 3.2 113 chr3L 21994437 intergenic not near genes chr3L 21994494 intergenic not near genes chr3L 21994550 intergenic not near genes chr3L_9_21990001 chr3L_21990001 RAL-88 981 chr3L 22006839 22006855 chr3L 22006925 22006941 4 86 1.5 1.0 1.2 1.8 102 chr3L 22006839 intergenic not near genes chr3L 22006890 intergenic not near genes chr3L 22006941 intergenic not near genes chr3L_4_22005001 chr3L_22005001 RAL-88 982 chr3L 22038669 22038694 chr3L 22039231 22039260 5 562 9.0 6.5 7.8 0.6 591 chr3L 22038669 intron Oct-TyrR + chr3L 22038964 intron Oct-TyrR + chr3L 22039260 intron Oct-TyrR + chr3L_5_22035001 chr3L_22035001 RAL-88 983 chr3L 22046192 22046215 chr3L 22046295 22046318 7 103 2.0 4.5 3.2 1.7 126 chr3L 22046192 intron Oct-TyrR + chr3L 22046255 intron Oct-TyrR + chr3L 22046318 intron Oct-TyrR + chr3L_7_22045001 chr3L_22045001 RAL-88 984 chr3L 22169454 22169487 chr3L 22169546 22169574 5 92 6.5 10.0 8.2 0.5 120 chr3L 22169454 intron olf413 + chr3L 22169514 intron olf413 + chr3L 22169574 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-88 985 chr3L 22447206 22447211 chr3L 22447296 22447302 4 90 3.5 3.0 3.2 1.0 96 chr3L 22447206 intergenic not near genes chr3L 22447254 intergenic not near genes chr3L 22447302 intergenic not near genes chr3L_4_22445001 chr3L_22445001 RAL-88 986 chr3L 22507124 22507150 chr3L 22507211 22507222 5 81 5.5 7.5 6.5 0.7 98 chr3L 22507124 intergenic not near genes chr3L 22507173 intergenic not near genes chr3L 22507222 intergenic not near genes chr3L_5_22505001 chr3L_22505001 RAL-88 987 chr3L 22570425 22570454 chr3L 22570569 22570598 8 144 1.5 3.0 2.2 2.5 173 chr3L 22570425 intergenic not near genes chr3L 22570512 intergenic not near genes chr3L 22570598 intergenic not near genes chr3L_8_22570001 chr3L_22570001 RAL-88 988 chr3L 22577626 22577650 chr3L 22582402 22582438 Doc 10 4783 3.0 3.0 3.0 2.5 4812 chr3L 22577626 intergenic not near genes chr3L 22580032 intergenic not near genes chr3L 22582438 3` UTR CG14459 - chr3L_10_22580001 chr3L_22580001 RAL-88 989 chr3L 22617194 22617216 chr3L 22624645 22624668 blood 7 7451 3.5 2.5 3.0 1.8 7474 chr3L 22617194 intron CG14459 - chr3L 22620931 intron CG14459 - chr3L 22624668 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-88 990 chr3L 22652319 22652351 chr3L 22652457 22652489 5 138 8.5 9.5 9.0 0.5 170 chr3L 22652319 exon CG33772 - chr3L 22652404 intron CG33772 - chr3L 22652489 exon CG33772 - chr3L_5_22650001 chr3L_22650001 RAL-88 991 chr3L 22674431 22674458 chr3L 22674509 22674530 4 76 6.0 6.0 6.0 0.6 99 chr3L 22674431 intron CG14457 + chr3L 22674480 intron CG14457 + chr3L 22674530 intron CG14457 + chr3L_4_22670001 chr3L_22670001 RAL-88 992 chr3L 22761402 22761410 chr3L 22766836 22766844 Ivk 4 5433 1.0 4.5 2.8 1.1 5442 chr3L 22761402 intron SPoCk + chr3L 22764123 intron SPoCk + chr3L 22766844 intron SPoCk + chr3L_4_22760001 chr3L_22760001 RAL-88 993 chr3L 22786065 22786094 chr3L 22788504 22788531 7 2440 8.0 17.0 12.5 0.5 2466 chr3L 22786065 3` UTR SPoCk + chr3L 22787298 3` UTR SPoCk + chr3L 22788531 exon CG14448 + chr3L_7_22785001 chr3L_22785001 RAL-88 994 chr3L 22838603 22838617 chr3L 22838682 22838698 5 80 6.5 7.0 6.8 0.6 95 chr3L 22838603 intergenic CG11226 + chr3L 22838650 intergenic CG11226 + chr3L 22838698 intergenic not near genes chr3L_5_22835001 chr3L_22835001 RAL-88 995 chr3L 22853462 22853716 chr3L 22853549 22853802 16 86 1.0 4.5 2.8 4.2 340 chr3L 22853462 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853632 5` UTR CR43426 + chr3L 22853802 5` UTR CR43426 + chr3L_16_22850001 chr3L_22850001 RAL-88 996 chr3L 22865995 22866013 chr3L 22867128 22867146 Doc 4 1133 3.5 5.0 4.2 0.8 1151 chr3L 22865995 intron CG33170 + chr3L 22866570 intron CG33170 + chr3L 22867146 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-88 997 chr3L 22909034 22909047 chr3L 22909125 22909138 4 91 9.5 9.0 9.2 0.4 104 chr3L 22909034 intergenic CR45661 + chr3L 22909086 intergenic CR45661 + chr3L 22909138 intergenic CR45661 + chr3L_4_22905001 chr3L_22905001 RAL-88 998 chr3L 23004921 23004928 chr3L 23005228 23005245 4 319 1.5 2.0 1.8 1.4 324 chr3L 23004921 intron nrm + chr3L 23005083 intron nrm + chr3L 23005245 intron nrm + chr3L_4_23005001 chr3L_23005001 RAL-88 999 chr3L 23096071 23096108 chr3L 23096154 23096190 8 80 0.5 1.0 0.8 4.4 119 chr3L 23096071 intergenic not near genes chr3L 23096130 intergenic not near genes chr3L 23096190 intergenic not near genes chr3L_8_23095001 chr3L_23095001 RAL-88 1000 chr3L 23251941 23251977 chr3L 23252058 23252072 7 113 2.5 2.5 2.5 2.0 131 chr3L 23251941 intron nAChRalpha4 + chr3L 23252006 intron nAChRalpha4 + chr3L 23252072 intron nAChRalpha4 + chr3L_7_23250001 chr3L_23250001 RAL-88 1001 chr3L 23428238 23428269 chr3L 23428318 23428349 4 77 1.0 2.5 1.8 1.4 111 chr3L 23428238 intergenic not near genes chr3L 23428294 intergenic not near genes chr3L 23428349 intergenic not near genes chr3L_4_23425001 chr3L_23425001 RAL-88 1002 chr3L 23449718 23449730 chr3L 23449776 23449805 7 72 11.5 12.0 11.8 0.5 87 chr3L 23449718 intergenic not near genes chr3L 23449762 intergenic not near genes chr3L 23449805 intergenic not near genes chr3L_7_23445001 chr3L_23445001 RAL-88 1003 chr3L 24009666 24009682 chr3L 24009848 24009864 4 182 8.0 3.0 5.5 0.6 198 chr3L 24009666 intergenic CR40053 - chr3L 24009765 intergenic CR40053 - chr3L 24009864 intergenic CR40053 - chr3L_4_24005001 chr3L_24005001 RAL-88 1004 chr3L 24021278 24021306 chr3L 24022435 24022463 1360 6 1156 1.0 0.0 0.5 4.0 1185 chr3L 24021278 intergenic not near genes chr3L 24021870 intergenic not near genes chr3L 24022463 intergenic not near genes chr3L_6_24020001 chr3L_24020001 RAL-88 1005 chr3L 24168793 24168806 chr3L 24176116 24176131 ZAM 6 7320 5.0 3.0 4.0 1.2 7338 chr3L 24168793 intron Snap25 + chr3L 24172462 intron Snap25 + chr3L 24176131 intron Snap25 + chr3L_6_24170001 chr3L_24170001 RAL-88 1006 chr3L 25464033 25464095 chr3L 25464120 25464193 8 90 4.0 4.0 4.0 1.6 160 chr3L 25464033 intergenic not near genes chr3L 25464113 intergenic not near genes chr3L 25464193 intergenic not near genes chr3L_8_25460001 chr3L_25460001 RAL-88 1007 chr3L 25627823 25627829 chr3L 25627909 25627914 4 85 0.5 1.0 0.8 2.2 91 chr3L 25627823 intron CG41343 - chr3L 25627868 intron CG41343 - chr3L 25627914 intron CG41343 - chr3L_4_25625001 chr3L_25625001 RAL-88 1008 chr3L 25842479 25842496 chr3L 25842564 25842582 4 84 2.5 2.0 2.2 1.2 103 chr3L 25842479 intron CG40178 - chr3L 25842530 intron CG40178 - chr3L 25842582 intron CG40178 - chr3L_4_25840001 chr3L_25840001 RAL-88 1009 chr3L 25886870 25886897 chr3L 25887271 25887299 5 402 5.5 3.0 4.2 1.0 429 chr3L 25886870 intron CG40178 - chr3L 25887084 intron CG40178 - chr3L 25887299 intron CG40178 - chr3L_5_25885001 chr3L_25885001 RAL-88 1010 chr3L 24948771 24948772 chr3L 25934974 25935001 diver2 4 986212 14.0 15.0 14.5 0.3 986230 chr3L 24948771 intergenic not near genes chr3L 25441886 intergenic not near genes chr3L 25935001 intron CG40178 - chr3L_4_25440001 chr3L_25440001 RAL-88 1011 chr3L 26009430 26009454 chr3L 26009521 26009530 5 86 1.5 0.0 0.8 2.8 100 chr3L 26009430 intron CG40178 - chr3L 26009480 intron CG40178 - chr3L 26009530 intron CG40178 - chr3L_5_26005001 chr3L_26005001 RAL-88 1012 chr3L 26694937 26694958 chr3L 26695006 26695008 5 72 0.0 0.5 0.2 4.2 71 chr3L 26694937 intergenic not near genes chr3L 26694972 intergenic not near genes chr3L 26695008 intergenic not near genes chr3L_5_26690001 chr3L_26690001 RAL-88 1013 chr3L 27167948 27167982 chr3L 27168067 27168071 7 107 1.0 2.5 1.8 2.5 123 chr3L 27167948 intergenic not near genes chr3L 27168010 intergenic not near genes chr3L 27168071 intergenic not near genes chr3L_7_27165001 chr3L_27165001 RAL-88 1014 chr3L 27284246 27284281 chr3L 27284352 27284386 4 100 11.0 12.0 11.5 0.3 140 chr3L 27284246 intron Dbp80 + chr3L 27284316 intron Dbp80 + chr3L 27284386 intron Dbp80 + chr3L_4_27280001 chr3L_27280001 RAL-88 1015 chr3L 27727639 27727661 chr3L 27728744 27728757 G-element 6 1104 5.5 2.0 3.8 1.2 1118 chr3L 27727639 intergenic not near genes chr3L 27728198 intergenic not near genes chr3L 27728757 intergenic not near genes chr3L_6_27725001 chr3L_27725001 RAL-88 1016 chr3R 4206073 4206099 chr3R 4211648 4211674 mdg3 7 5574 2.5 1.0 1.8 2.5 5601 chr3R 4206073 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211674 intron CG14636 - chr3R_7_4205001 chr3R_4205001 RAL-88 1017 chr3R 4408408 4408443 chr3R 4412712 4412747 Juan 4 4304 1.5 0.5 1.0 2.0 4339 chr3R 4408408 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412747 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-88 1018 chr3R 4609546 4609569 chr3R 4610710 4610732 1360 6 1164 14.5 4.5 9.5 0.6 1186 chr3R 4609546 intergenic not near genes chr3R 4610139 intergenic not near genes chr3R 4610732 intergenic not near genes chr3R_6_4610001 chr3R_4610001 RAL-88 1019 chr3R 4625324 4625347 chr3R 4625710 4625733 5 386 7.5 7.5 7.5 0.6 409 chr3R 4625324 intron 5-HT2A + chr3R 4625528 intron 5-HT2A + chr3R 4625733 intron 5-HT2A + chr3R_5_4625001 chr3R_4625001 RAL-88 1020 chr3R 4769164 4769190 chr3R 4769242 4769266 7 78 9.5 7.5 8.5 0.7 102 chr3R 4769164 intron,intron atms +,CG44098 - chr3R 4769215 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_7_4765001 chr3R_4765001 RAL-88 1021 chr3R 4861574 4861596 chr3R 4861654 4861668 5 77 8.5 9.5 9.0 0.5 94 chr3R 4861574 intron opa + chr3R 4861621 intron opa + chr3R 4861668 intron opa + chr3R_5_4860001 chr3R_4860001 RAL-88 1022 chr3R 4887478 4887509 chr3R 4894854 4894883 rover 6 7375 4.5 3.5 4.0 1.2 7405 chr3R 4887478 intergenic not near genes chr3R 4891180 intergenic not near genes chr3R 4894883 intergenic not near genes chr3R_6_4890001 chr3R_4890001 RAL-88 1023 chr3R 4904877 4904891 chr3R 18214682 18214692 4 13309804 11.0 4.5 7.8 0.5 13309815 chr3R 4904877 intergenic not near genes chr3R 11559784 3` UTR CG10898 + chr3R 18214692 3` UTR CG7985 + chr3R_4_11555001 chr3R_11555001 RAL-88 1024 chr3R 4966004 4966034 chr3R 4966096 4966126 4 92 1.5 0.5 1.0 2.0 122 chr3R 4966004 intron CG1124 + chr3R 4966065 intron CG1124 + chr3R 4966126 intron CG1124 + chr3R_4_4965001 chr3R_4965001 RAL-88 1025 chr3R 5045852 5045874 chr3R 5052954 5052975 HMS-Beagle 5 7102 2.0 1.5 1.8 1.8 7123 chr3R 5045852 intron CR43635 - chr3R 5049414 intergenic not near genes chr3R 5052975 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-88 1026 chr3R 5067982 5068012 chr3R 5073499 5073529 mdg3 10 5517 0.5 2.0 1.2 4.5 5547 chr3R 5067982 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073529 intergenic not near genes chr3R_10_5070001 chr3R_5070001 RAL-88 1027 chr3R 5088680 5088712 chr3R 5088765 5088796 5 83 12.0 10.0 11.0 0.4 116 chr3R 5088680 intergenic not near genes chr3R 5088738 intergenic not near genes chr3R 5088796 intergenic not near genes chr3R_5_5085001 chr3R_5085001 RAL-88 1028 chr3R 5131341 5131374 chr3R 5131419 5131451 7 78 1.5 2.5 2.0 2.3 110 chr3R 5131341 intergenic not near genes chr3R 5131396 intergenic not near genes chr3R 5131451 intergenic not near genes chr3R_7_5130001 chr3R_5130001 RAL-88 1029 chr3R 5143189 5143218 chr3R 5143341 5143348 4 146 1.5 1.0 1.2 1.8 159 chr3R 5143189 intergenic not near genes chr3R 5143268 intergenic not near genes chr3R 5143348 intergenic not near genes chr3R_4_5140001 chr3R_5140001 RAL-88 1030 chr3R 5278105 5278109 chr3R 5278179 5278190 4 79 4.0 6.0 5.0 0.7 85 chr3R 5278105 intron mtd - chr3R 5278148 intron mtd - chr3R 5278190 intron mtd - chr3R_4_5275001 chr3R_5275001 RAL-88 1031 chr3R 5278110 5278123 chr3R 5278178 5278204 6 78 2.5 6.0 4.2 1.2 94 chr3R 5278110 intron mtd - chr3R 5278157 intron mtd - chr3R 5278204 intron mtd - chr3R_6_5275001 chr3R_5275001 RAL-88 1032 chr3R 5289266 5289286 chr3R 5289341 5289374 6 84 2.5 3.5 3.0 1.5 108 chr3R 5289266 intron mtd - chr3R 5289320 intron mtd - chr3R 5289374 intron mtd - chr3R_6_5285001 chr3R_5285001 RAL-88 1033 chr3R 5338407 5338428 chr3R 5343583 5343605 Rt1c 8 5176 1.0 4.0 2.5 2.3 5198 chr3R 5338407 intron mtd - chr3R 5341006 intron mtd - chr3R 5343605 intron mtd - chr3R_8_5340001 chr3R_5340001 RAL-88 1034 chr3R 5385973 5386002 chr3R 5386144 5386172 8 171 2.5 3.5 3.0 2.0 199 chr3R 5385973 intron kkv - chr3R 5386072 intron kkv - chr3R 5386172 intron kkv - chr3R_8_5385001 chr3R_5385001 RAL-88 1035 chr3R 5712093 5712115 chr3R 5712181 5712203 5 87 6.0 4.5 5.2 0.8 110 chr3R 5712093 3` UTR plx + chr3R 5712148 3` UTR plx + chr3R 5712203 3` UTR plx + chr3R_5_5710001 chr3R_5710001 RAL-88 1036 chr3R 5746027 5746046 chr3R 5746268 5746287 pogo 7 241 1.0 6.5 3.8 1.5 260 chr3R 5746027 3` UTR Madm + chr3R 5746157 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_7_5745001 chr3R_5745001 RAL-88 1037 chr3R 5747022 5747026 chr3R 5753213 5753217 diver 4 6191 2.0 0.5 1.2 1.8 6195 chr3R 5747022 intergenic Madm + chr3R 5750120 intergenic not near genes chr3R 5753217 intergenic CG2091 - chr3R_4_5750001 chr3R_5750001 RAL-88 1038 chr3R 5809123 5809143 chr3R 5809356 5809377 pogo 7 239 2.5 2.5 2.5 2.0 254 chr3R 5809123 3` UTR CG11000 + chr3R 5809250 3` UTR CG11000 + chr3R 5809377 3` UTR CG11000 + chr3R_7_5805001 chr3R_5805001 RAL-88 1039 chr3R 5822385 5822403 chr3R 5823552 5823570 1360 8 1167 4.0 4.0 4.0 1.6 1185 chr3R 5822385 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823570 3` UTR CG2023 - chr3R_8_5820001 chr3R_5820001 RAL-88 1040 chr3R 5927559 5927590 chr3R 5927799 5927829 pogo 8 240 2.5 2.5 2.5 2.3 270 chr3R 5927559 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927829 intron CG34113 - chr3R_8_5925001 chr3R_5925001 RAL-88 1041 chr3R 6006329 6006358 chr3R 6006414 6006438 5 83 6.5 4.0 5.2 0.8 109 chr3R 6006329 intron Rm62 - chr3R 6006384 intron Rm62 - chr3R 6006438 intron Rm62 - chr3R_5_6005001 chr3R_6005001 RAL-88 1042 chr3R 6015966 6015993 chr3R 6024444 6024474 Tirant 8 8480 2.5 3.0 2.8 2.1 8508 chr3R 6015966 intergenic not near genes chr3R 6020220 intergenic not near genes chr3R 6024474 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-88 1043 chr3R 6043640 6043654 chr3R 6043860 6043876 4 220 7.5 6.5 7.0 0.5 236 chr3R 6043640 intergenic not near genes chr3R 6043758 intergenic not near genes chr3R 6043876 intergenic not near genes chr3R_4_6040001 chr3R_6040001 RAL-88 1044 chr3R 6048453 6048465 chr3R 6048535 6048546 5 82 11.5 14.5 13.0 0.4 93 chr3R 6048453 intergenic not near genes chr3R 6048500 intergenic not near genes chr3R 6048546 intergenic not near genes chr3R_5_6045001 chr3R_6045001 RAL-88 1045 chr3R 6141917 6141952 chr3R 6141994 6142006 8 72 8.0 11.0 9.5 0.8 89 chr3R 6141917 intergenic not near genes chr3R 6141962 intergenic not near genes chr3R 6142006 intergenic not near genes chr3R_8_6140001 chr3R_6140001 RAL-88 1046 chr3R 6158514 6158541 chr3R 6167091 6167124 Tirant 5 8582 3.0 4.0 3.5 1.1 8610 chr3R 6158514 intergenic not near genes chr3R 6162819 intergenic not near genes chr3R 6167124 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-88 1047 chr3R 6175171 6175201 chr3R 6182443 6182469 HMS-Beagle2 8 7272 2.0 2.0 2.0 2.7 7298 chr3R 6175171 intergenic Osi1 + chr3R 6178820 intron CR45194 + chr3R 6182469 intergenic CR45194 + chr3R_8_6175001 chr3R_6175001 RAL-88 1048 chr3R 6191169 6191200 chr3R 6191248 6191280 5 79 6.5 5.5 6.0 0.7 111 chr3R 6191169 intron NPFR + chr3R 6191224 intron NPFR + chr3R 6191280 intron NPFR + chr3R_5_6190001 chr3R_6190001 RAL-88 1049 chr3R 6206287 6206319 chr3R 6206498 6206528 BS 4 214 6.0 3.0 4.5 0.7 241 chr3R 6206287 exon Osi24 + chr3R 6206408 intron Osi24 + chr3R 6206528 intron Osi24 + chr3R_4_6205001 chr3R_6205001 RAL-88 1050 chr3R 6538211 6538232 chr3R 6538309 6538330 4 97 9.0 7.5 8.2 0.4 119 chr3R 6538211 intron dpr11 - chr3R 6538270 intron dpr11 - chr3R 6538330 exon dpr11 - chr3R_4_6535001 chr3R_6535001 RAL-88 1051 chr3R 6551118 6551136 chr3R 6551212 6551230 7 94 8.0 11.5 9.8 0.6 112 chr3R 6551118 intron dpr11 - chr3R 6551174 intron dpr11 - chr3R 6551230 intron dpr11 - chr3R_7_6550001 chr3R_6550001 RAL-88 1052 chr3R 6737497 6737532 chr3R 6739284 6739319 Doc 4 1787 1.5 1.5 1.5 1.6 1822 chr3R 6737497 intron pb - chr3R 6738408 intron pb - chr3R 6739319 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-88 1053 chr3R 6914738 6914773 chr3R 6914839 6914874 10 100 7.5 9.0 8.2 1.1 136 chr3R 6914738 intron Antp - chr3R 6914806 intron Antp - chr3R 6914874 intron Antp - chr3R_10_6910001 chr3R_6910001 RAL-88 1054 chr3R 6947386 6947404 chr3R 6947484 6947503 7 98 3.5 4.0 3.8 1.5 117 chr3R 6947386 intron Antp - chr3R 6947444 intron Antp - chr3R 6947503 intron Antp - chr3R_7_6945001 chr3R_6945001 RAL-88 1055 chr3R 7030717 7030730 chr3R 7030791 7030799 4 74 1.5 4.0 2.8 1.1 82 chr3R 7030717 intergenic not near genes chr3R 7030758 intergenic not near genes chr3R 7030799 intergenic not near genes chr3R_4_7030001 chr3R_7030001 RAL-88 1056 chr3R 7103283 7103317 chr3R 7103359 7103391 10 73 10.0 7.5 8.8 1.0 108 chr3R 7103283 intron Alh - chr3R 7103337 intron Alh - chr3R 7103391 intron Alh - chr3R_10_7100001 chr3R_7100001 RAL-88 1057 chr3R 7302298 7302320 chr3R 7302390 7302412 5 92 6.0 6.0 6.0 0.7 114 chr3R 7302298 intron rn - chr3R 7302355 intron rn - chr3R 7302412 intron rn - chr3R_5_7300001 chr3R_7300001 RAL-88 1058 chr3R 7356215 7356238 chr3R 7356308 7356331 5 93 6.5 8.0 7.2 0.6 116 chr3R 7356215 intergenic not near genes chr3R 7356273 intergenic not near genes chr3R 7356331 intergenic not near genes chr3R_5_7355001 chr3R_7355001 RAL-88 1059 chr3R 7655005 7655040 chr3R 7655087 7655121 6 81 10.5 8.5 9.5 0.6 116 chr3R 7655005 intergenic not near genes chr3R 7655063 intergenic not near genes chr3R 7655121 intergenic not near genes chr3R_6_7655001 chr3R_7655001 RAL-88 1060 chr3R 7677916 7677944 chr3R 7678029 7678057 11 111 1.0 2.0 1.5 4.4 141 chr3R 7677916 intron Nlg1 + chr3R 7677986 intron Nlg1 + chr3R 7678057 intron Nlg1 + chr3R_11_7675001 chr3R_7675001 RAL-88 1061 chr3R 7729475 7729486 chr3R 7737413 7737424 Stalker2 4 7938 2.5 4.0 3.2 1.0 7949 chr3R 7729475 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737424 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-88 1062 chr3R 7746472 7746493 chr3R 7746565 7746588 5 95 7.5 4.5 6.0 0.7 116 chr3R 7746472 intergenic not near genes chr3R 7746530 intergenic not near genes chr3R 7746588 intergenic not near genes chr3R_5_7745001 chr3R_7745001 RAL-88 1063 chr3R 7948464 7948467 chr3R 7948534 7948544 4 73 1.5 4.5 3.0 1.0 80 chr3R 7948464 intron dsx - chr3R 7948504 intron dsx - chr3R 7948544 intron dsx - chr3R_4_7945001 chr3R_7945001 RAL-88 1064 chr3R 7965313 7965341 chr3R 7965398 7965429 7 87 3.5 1.0 2.2 2.2 116 chr3R 7965313 intron dsx - chr3R 7965371 intron dsx - chr3R 7965429 intron dsx - chr3R_7_7965001 chr3R_7965001 RAL-88 1065 chr3R 8090271 8090303 chr3R 8090448 8090479 4 177 1.5 1.5 1.5 1.6 208 chr3R 8090271 5` UTR CR44330 + chr3R 8090375 intergenic CR44330 + chr3R 8090479 intergenic CR44330 + chr3R_4_8090001 chr3R_8090001 RAL-88 1066 chr3R 8207556 8207576 chr3R 8208398 8208421 F-element 4 843 3.0 4.5 3.8 0.8 865 chr3R 8207556 intergenic not near genes chr3R 8207988 intergenic not near genes chr3R 8208421 intergenic not near genes chr3R_4_8205001 chr3R_8205001 RAL-88 1067 chr3R 8253799 8253832 chr3R 8254051 8254085 4 252 9.5 6.0 7.8 0.5 286 chr3R 8253799 intron mtg + chr3R 8253942 intron mtg + chr3R 8254085 intron mtg + chr3R_4_8250001 chr3R_8250001 RAL-88 1068 chr3R 8326552 8326572 chr3R 8326649 8326651 4 86 3.5 6.0 4.8 0.7 99 chr3R 8326552 intron Poxm - chr3R 8326602 intron Poxm - chr3R 8326651 intron Poxm - chr3R_4_8325001 chr3R_8325001 RAL-88 1069 chr3R 8339246 8339247 chr3R 21907534 21907536 10 13568289 19.5 13.5 16.5 0.6 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 RAL-88 1070 chr3R 8403005 8403040 chr3R 8412171 8412206 roo 11 9165 3.5 2.5 3.0 2.8 9201 chr3R 8403005 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-88 1071 chr3R 8541343 8541363 chr3R 8541423 8541441 4 80 6.5 7.0 6.8 0.5 98 chr3R 8541343 intergenic not near genes chr3R 8541392 intergenic not near genes chr3R 8541441 intergenic not near genes chr3R_4_8540001 chr3R_8540001 RAL-88 1072 chr3R 8552367 8552392 chr3R 8552446 8552469 6 79 7.0 7.0 7.0 0.8 102 chr3R 8552367 intergenic Or85d + chr3R 8552418 intergenic Or85d + chr3R 8552469 intergenic Or85d + chr3R_6_8550001 chr3R_8550001 RAL-88 1073 chr3R 8554549 8554794 chr3R 8554673 8554877 6 118 5.5 5.0 5.2 1.0 328 chr3R 8554549 intergenic not near genes chr3R 8554713 intergenic not near genes chr3R 8554877 intergenic not near genes chr3R_6_8550001 chr3R_8550001 RAL-88 1074 chr3R 8570476 8570508 chr3R 8575112 8575144 HMS-Beagle 9 4635 3.0 3.5 3.2 2.1 4668 chr3R 8570476 intergenic not near genes chr3R 8572810 intergenic not near genes chr3R 8575144 intergenic not near genes chr3R_9_8570001 chr3R_8570001 RAL-88 1075 chr3R 8601767 8601799 chr3R 8610920 8610952 roo 4 9152 1.5 1.5 1.5 1.6 9185 chr3R 8601767 intron 5-HT2B + chr3R 8606360 intron 5-HT2B + chr3R 8610952 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-88 1076 chr3R 8614792 8614820 chr3R 8614995 8615016 7 202 6.0 8.5 7.2 0.9 224 chr3R 8614792 intron 5-HT2B + chr3R 8614904 intron 5-HT2B + chr3R 8615016 intron 5-HT2B + chr3R_7_8610001 chr3R_8610001 RAL-88 1077 chr3R 8636934 8636964 chr3R 8637235 8637267 12 302 3.0 3.5 3.2 2.9 333 chr3R 8636934 intergenic not near genes chr3R 8637100 intergenic not near genes chr3R 8637267 intergenic not near genes chr3R_12_8635001 chr3R_8635001 RAL-88 1078 chr3R 8707360 8707387 chr3R 8709801 8709828 jockey 4 2440 4.5 5.0 4.8 0.7 2468 chr3R 8707360 intergenic not near genes chr3R 8708594 intergenic not near genes chr3R 8709828 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-88 1079 chr3R 9036377 9036407 chr3R 9036455 9036485 4 78 2.5 0.5 1.5 1.6 108 chr3R 9036377 intron neur - chr3R 9036431 intron neur - chr3R 9036485 intron neur - chr3R_4_9035001 chr3R_9035001 RAL-88 1080 chr3R 9083141 9083170 chr3R 9083225 9083245 15 83 1.5 3.0 2.2 4.7 104 chr3R 9083141 intron pum - chr3R 9083193 intron pum - chr3R 9083245 intron pum - chr3R_15_9080001 chr3R_9080001 RAL-88 1081 chr3R 9141143 9141163 chr3R 9141227 9141247 5 84 0.5 4.5 2.5 1.4 104 chr3R 9141143 intron pum - chr3R 9141195 intron pum - chr3R 9141247 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-88 1082 chr3R 9143041 9143051 chr3R 9143182 9143191 5 140 0.5 4.0 2.2 1.6 150 chr3R 9143041 intron pum - chr3R 9143116 intron pum - chr3R 9143191 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-88 1083 chr3R 9204250 9204280 chr3R 9204337 9204366 11 85 2.5 3.5 3.0 2.8 116 chr3R 9204250 intron pum - chr3R 9204308 intron pum - chr3R 9204366 intron pum - chr3R_11_9200001 chr3R_9200001 RAL-88 1084 chr3R 9319581 9319599 chr3R 9320016 9320034 jockey 7 435 4.5 1.0 2.8 1.8 453 chr3R 9319581 intron CG8861 - chr3R 9319808 intron CG8861 - chr3R 9320034 intron CG8861 - chr3R_7_9315001 chr3R_9315001 RAL-88 1085 chr3R 9382815 9382848 chr3R 9382940 9382973 11 124 3.5 0.0 1.8 3.9 158 chr3R 9382815 intron FER - chr3R 9382894 intron FER - chr3R 9382973 intron FER - chr3R_11_9380001 chr3R_9380001 RAL-88 1086 chr3R 9560789 9560804 chr3R 9560871 9560886 8 82 4.5 4.0 4.2 1.5 97 chr3R 9560789 intron MBD-like + chr3R 9560838 intron MBD-like + chr3R 9560886 intron MBD-like + chr3R_8_9560001 chr3R_9560001 RAL-88 1087 chr3R 9648895 9648919 chr3R 9648981 9649005 4 86 2.5 2.0 2.2 1.2 110 chr3R 9648895 intron Dh44 + chr3R 9648950 intron Dh44 + chr3R 9649005 exon Dh44 + chr3R_4_9645001 chr3R_9645001 RAL-88 1088 chr3R 9702264 9702293 chr3R 9702340 9702365 4 74 1.5 2.5 2.0 1.3 101 chr3R 9702264 intron Unc-115a - chr3R 9702314 intron Unc-115a - chr3R 9702365 intron Unc-115a - chr3R_4_9700001 chr3R_9700001 RAL-88 1089 chr3R 9913116 9913148 chr3R 9913438 9913472 18 321 1.5 2.0 1.8 6.4 356 chr3R 9913116 intron Glut4EF + chr3R 9913294 intron Glut4EF + chr3R 9913472 intron Glut4EF + chr3R_18_9910001 chr3R_9910001 RAL-88 1090 chr3R 10181842 10181851 chr3R 10182128 10182140 4 288 5.0 1.5 3.2 1.0 298 chr3R 10181842 intron CG12814 - chr3R 10181991 intron CG12814 - chr3R 10182140 intron CG12814 - chr3R_4_10180001 chr3R_10180001 RAL-88 1091 chr3R 10231784 10231812 chr3R 10237360 10237389 mdg3 4 5577 0.5 2.0 1.2 1.8 5605 chr3R 10231784 intron CG42795 + chr3R 10234586 intron CG42795 + chr3R 10237389 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-88 1092 chr3R 10306955 10306981 chr3R 10312214 10312240 7 5259 23.5 7.0 15.2 0.4 5285 chr3R 10306955 exon CG43143 + chr3R 10309598 exon CG6293 - chr3R 10312240 3` UTR Bruce - chr3R_7_10305001 chr3R_10305001 RAL-88 1093 chr3R 10512368 10512395 chr3R 10512475 10512502 4 107 2.0 4.0 3.0 1.0 134 chr3R 10512368 intron hth - chr3R 10512435 intron hth - chr3R 10512502 intron hth - chr3R_4_10510001 chr3R_10510001 RAL-88 1094 chr3R 10531871 10531894 chr3R 10531952 10531975 7 79 3.5 1.0 2.2 2.2 104 chr3R 10531871 intron hth - chr3R 10531923 intron hth - chr3R 10531975 intron hth - chr3R_7_10530001 chr3R_10530001 RAL-88 1095 chr3R 10563460 10563488 chr3R 10563557 10563584 4 97 3.5 4.5 4.0 0.8 124 chr3R 10563460 intron hth - chr3R 10563522 intron hth - chr3R 10563584 intron hth - chr3R_4_10560001 chr3R_10560001 RAL-88 1096 chr3R 10683555 10683586 chr3R 10683668 10683698 5 112 1.5 5.0 3.2 1.2 143 chr3R 10683555 intron CR44230 + chr3R 10683626 intron CR44230 + chr3R 10683698 5` UTR CR44230 + chr3R_5_10680001 chr3R_10680001 RAL-88 1097 chr3R 10727646 10727679 chr3R 10727726 10727759 10 79 1.5 4.5 3.0 2.5 113 chr3R 10727646 intergenic not near genes chr3R 10727702 intergenic not near genes chr3R 10727759 intergenic not near genes chr3R_10_10725001 chr3R_10725001 RAL-88 1098 chr3R 10734982 10735018 chr3R 10735111 10735147 11 129 1.5 1.5 1.5 4.4 165 chr3R 10734982 intergenic tomboy20 - chr3R 10735064 intergenic tomboy20 - chr3R 10735147 intergenic tomboy20 - chr3R_11_10735001 chr3R_10735001 RAL-88 1099 chr3R 10804179 10804199 chr3R 10811711 10811731 17.6 5 7532 1.5 2.0 1.8 1.8 7552 chr3R 10804179 intergenic CG14692 - chr3R 10807955 intergenic not near genes chr3R 10811731 3` UTR CG14693 - chr3R_5_10805001 chr3R_10805001 RAL-88 1100 chr3R 10870864 10870897 chr3R 10870944 10870978 10 81 4.5 4.0 4.2 1.9 114 chr3R 10870864 intergenic Fdh -,Tsp86D + chr3R 10870921 3` UTR Fdh - chr3R 10870978 3` UTR Fdh - chr3R_10_10870001 chr3R_10870001 RAL-88 1101 chr3R 10901756 10901785 chr3R 10902005 10902034 7 250 0.5 3.0 1.8 2.5 278 chr3R 10901756 intergenic not near genes chr3R 10901895 intergenic not near genes chr3R 10902034 intergenic not near genes chr3R_7_10900001 chr3R_10900001 RAL-88 1102 chr3R 10919688 10919718 chr3R 10919765 10919796 10 78 0.5 2.5 1.5 4.0 108 chr3R 10919688 intergenic not near genes chr3R 10919742 intergenic not near genes chr3R 10919796 intergenic not near genes chr3R_10_10915001 chr3R_10915001 RAL-88 1103 chr3R 10920047 10920077 chr3R 10920124 10920155 6 78 2.5 2.0 2.2 1.9 108 chr3R 10920047 intergenic not near genes chr3R 10920101 intergenic not near genes chr3R 10920155 intergenic not near genes chr3R_6_10920001 chr3R_10920001 RAL-88 1104 chr3R 10940720 10940732 chr3R 10940809 10940821 5 89 2.0 0.5 1.2 2.3 101 chr3R 10940720 intergenic not near genes chr3R 10940770 intergenic not near genes chr3R 10940821 intergenic not near genes chr3R_5_10940001 chr3R_10940001 RAL-88 1105 chr3R 11059000 11059032 chr3R 11059114 11059140 8 112 0.5 2.5 1.5 3.2 140 chr3R 11059000 intergenic not near genes chr3R 11059070 intergenic not near genes chr3R 11059140 intergenic not near genes chr3R_8_11055001 chr3R_11055001 RAL-88 1106 chr3R 11059438 11059473 chr3R 11059514 11059549 4 76 0.5 3.0 1.8 1.4 111 chr3R 11059438 intergenic not near genes chr3R 11059494 intergenic not near genes chr3R 11059549 intergenic not near genes chr3R_4_11055001 chr3R_11055001 RAL-88 1107 chr3R 11085468 11085490 chr3R 11085545 11085567 5 77 0.0 3.0 1.5 2.0 99 chr3R 11085468 3` UTR CR44940 - chr3R 11085518 intergenic CR44940 - chr3R 11085567 intergenic CR44940 - chr3R_5_11085001 chr3R_11085001 RAL-88 1108 chr3R 11085773 11085801 chr3R 11086068 11086095 7 295 3.0 2.0 2.5 2.0 322 chr3R 11085773 intergenic CR44940 - chr3R 11085934 intergenic CR44940 - chr3R 11086095 intergenic not near genes chr3R_7_11085001 chr3R_11085001 RAL-88 1109 chr3R 11151127 11151146 chr3R 11151316 11151341 4 192 5.0 2.0 3.5 0.9 214 chr3R 11151127 3` UTR Ugt86Di - chr3R 11151234 3` UTR Ugt86Di - chr3R 11151341 3` UTR Ugt86Di - chr3R_4_11150001 chr3R_11150001 RAL-88 1110 chr3R 11197993 11198018 chr3R 11198090 11198117 5 96 4.0 1.0 2.5 1.4 124 chr3R 11197993 intron cu + chr3R 11198055 intron cu + chr3R 11198117 intron cu + chr3R_5_11195001 chr3R_11195001 RAL-88 1111 chr3R 11242252 11242282 chr3R 11242341 11242371 6 89 1.5 2.5 2.0 2.0 119 chr3R 11242252 3` UTR CG17734 - chr3R 11242312 3` UTR CG17734 - chr3R 11242371 3` UTR CG17734 - chr3R_6_11240001 chr3R_11240001 RAL-88 1112 chr3R 11379234 11379269 chr3R 11388389 11388422 roo 7 9155 2.0 2.0 2.0 2.3 9188 chr3R 11379234 intron pros + chr3R 11383828 intron pros + chr3R 11388422 intron pros + chr3R_7_11380001 chr3R_11380001 RAL-88 1113 chr3R 11694726 11694745 chr3R 11694817 11694838 5 93 0.0 2.0 1.0 2.5 112 chr3R 11694726 intergenic Fer3 - chr3R 11694782 intergenic Fer3 - chr3R 11694838 intergenic not near genes chr3R_5_11690001 chr3R_11690001 RAL-88 1114 chr3R 11734161 11734190 chr3R 11734279 11734306 15 118 3.0 2.0 2.5 4.3 145 chr3R 11734161 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734306 intergenic not near genes chr3R_15_11730001 chr3R_11730001 RAL-88 1115 chr3R 11841077 11841095 chr3R 11846266 11846284 BS 5 5190 3.5 5.5 4.5 0.9 5207 chr3R 11841077 intron CG6959 - chr3R 11843680 intron CG6959 - chr3R 11846284 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-88 1116 chr3R 11853437 11853468 chr3R 11853586 11853613 7 147 1.0 4.0 2.5 2.0 176 chr3R 11853437 intron CG6959 - chr3R 11853525 intron CG6959 - chr3R 11853613 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-88 1117 chr3R 11853773 11853796 chr3R 11853876 11853900 6 104 1.5 3.5 2.5 1.7 127 chr3R 11853773 intron CG6959 - chr3R 11853836 intron CG6959 - chr3R 11853900 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-88 1118 chr3R 11919304 11919335 chr3R 11919390 11919397 5 82 5.0 2.0 3.5 1.1 93 chr3R 11919304 intron Cad87A - chr3R 11919350 intron Cad87A - chr3R 11919397 intron Cad87A - chr3R_5_11915001 chr3R_11915001 RAL-88 1119 chr3R 11945387 11945403 chr3R 11945482 11945500 4 96 3.0 1.5 2.2 1.2 113 chr3R 11945387 intron Cad87A - chr3R 11945444 intron Cad87A - chr3R 11945500 intron Cad87A - chr3R_4_11945001 chr3R_11945001 RAL-88 1120 chr3R 11994995 11995015 chr3R 11995075 11995095 4 80 8.0 1.5 4.8 0.7 100 chr3R 11994995 exon Tk - chr3R 11995045 exon Tk - chr3R 11995095 exon Tk - chr3R_4_11995001 chr3R_11995001 RAL-88 1121 chr3R 12022885 12022908 chr3R 12025062 12025082 pogo 6 2175 2.5 2.0 2.2 1.9 2197 chr3R 12022885 intergenic not near genes chr3R 12023984 intergenic not near genes chr3R 12025082 intergenic not near genes chr3R_6_12020001 chr3R_12020001 RAL-88 1122 chr3R 12037332 12037344 chr3R 12037591 12037602 4 259 0.0 4.0 2.0 1.3 270 chr3R 12037332 intergenic not near genes chr3R 12037467 intergenic not near genes chr3R 12037602 intergenic not near genes chr3R_4_12035001 chr3R_12035001 RAL-88 1123 chr3R 12082000 12082029 chr3R 12082076 12082105 8 75 1.0 1.5 1.2 3.6 105 chr3R 12082000 intron CG14741 - chr3R 12082052 intron CG14741 - chr3R 12082105 intron CG14741 - chr3R_8_12080001 chr3R_12080001 RAL-88 1124 chr3R 12111901 12111922 chr3R 12111977 12111998 8 76 0.0 3.5 1.8 2.9 97 chr3R 12111901 intergenic dpr17 + chr3R 12111950 intergenic not near genes chr3R 12111998 intergenic not near genes chr3R_8_12110001 chr3R_12110001 RAL-88 1125 chr3R 12154028 12154061 chr3R 12154458 12154487 4 428 15.0 16.0 15.5 0.2 459 chr3R 12154028 intron dpr15 - chr3R 12154258 intron dpr15 - chr3R 12154487 intron dpr15 - chr3R_4_12150001 chr3R_12150001 RAL-88 1126 chr3R 12267858 12267883 chr3R 12267938 12267963 4 80 1.5 1.0 1.2 1.8 105 chr3R 12267858 intron svp + chr3R 12267910 intron svp + chr3R 12267963 intron svp + chr3R_4_12265001 chr3R_12265001 RAL-88 1127 chr3R 12274045 12274078 chr3R 12274130 12274154 11 76 2.0 1.0 1.5 4.4 109 chr3R 12274045 intron svp + chr3R 12274100 intron svp + chr3R 12274154 intron svp + chr3R_11_12270001 chr3R_12270001 RAL-88 1128 chr3R 12733475 12733496 chr3R 12733551 12733572 4 76 2.0 1.0 1.5 1.6 97 chr3R 12733475 intergenic not near genes chr3R 12733524 intergenic not near genes chr3R 12733572 intergenic not near genes chr3R_4_12730001 chr3R_12730001 RAL-88 1129 chr3R 12880120 12880150 chr3R 12880196 12880226 7 76 9.0 9.0 9.0 0.7 106 chr3R 12880120 intergenic not near genes chr3R 12880173 intergenic not near genes chr3R 12880226 intergenic not near genes chr3R_7_12880001 chr3R_12880001 RAL-88 1130 chr3R 12883802 12883811 chr3R 12883921 12883925 4 118 8.0 5.0 6.5 0.5 123 chr3R 12883802 intergenic not near genes chr3R 12883864 intergenic not near genes chr3R 12883925 intergenic not near genes chr3R_4_12880001 chr3R_12880001 RAL-88 1131 chr3R 13104419 13104420 chr3R 21907535 21907536 7 8803116 15.5 13.5 14.5 0.5 8803117 chr3R 13104419 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_7_17505001 chr3R_17505001 RAL-88 1132 chr3R 13120771 13120796 chr3R 13120847 13120873 9 76 4.0 1.0 2.5 2.6 102 chr3R 13120771 intron timeout + chr3R 13120822 intron timeout + chr3R 13120873 intron timeout + chr3R_9_13120001 chr3R_13120001 RAL-88 1133 chr3R 13135829 13135855 chr3R 13138004 13138030 pogo 7 2175 3.0 2.5 2.8 1.8 2201 chr3R 13135829 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136930 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138030 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13135001 chr3R_13135001 RAL-88 1134 chr3R 13143039 13143063 chr3R 13148615 13148639 mdg3 8 5573 2.0 3.5 2.8 2.1 5600 chr3R 13143039 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145839 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148639 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_8_13145001 chr3R_13145001 RAL-88 1135 chr3R 13194099 13194110 chr3R 13194688 13194699 4 589 5.0 6.5 5.8 0.6 600 chr3R 13194099 intergenic not near genes chr3R 13194399 intergenic not near genes chr3R 13194699 intergenic not near genes chr3R_4_13190001 chr3R_13190001 RAL-88 1136 chr3R 13195955 13195982 chr3R 13196050 13196077 5 95 13.0 7.0 10.0 0.5 122 chr3R 13195955 intergenic not near genes chr3R 13196016 intergenic not near genes chr3R 13196077 intergenic not near genes chr3R_5_13195001 chr3R_13195001 RAL-88 1137 chr3R 13205418 13205441 chr3R 13205493 13205522 10 80 8.0 11.5 9.8 0.9 104 chr3R 13205418 intergenic not near genes chr3R 13205470 intergenic not near genes chr3R 13205522 intergenic not near genes chr3R_10_13205001 chr3R_13205001 RAL-88 1138 chr3R 13206653 13206680 chr3R 13206889 13206916 8 236 6.0 1.5 3.8 1.7 263 chr3R 13206653 intergenic not near genes chr3R 13206784 intergenic not near genes chr3R 13206916 intergenic not near genes chr3R_8_13205001 chr3R_13205001 RAL-88 1139 chr3R 13276991 13277010 chr3R 13277080 13277099 6 88 7.0 5.0 6.0 0.9 108 chr3R 13276991 intergenic not near genes chr3R 13277045 intergenic not near genes chr3R 13277099 intergenic not near genes chr3R_6_13275001 chr3R_13275001 RAL-88 1140 chr3R 13380722 13380744 chr3R 13380810 13380832 4 88 6.5 10.5 8.5 0.4 110 chr3R 13380722 exon CG8870 + chr3R 13380777 exon CG8870 + chr3R 13380832 intron CG8870 + chr3R_4_13380001 chr3R_13380001 RAL-88 1141 chr3R 13603071 13603077 chr3R 13603161 13603168 4 91 4.0 6.0 5.0 0.7 97 chr3R 13603071 intergenic not near genes chr3R 13603120 intergenic not near genes chr3R 13603168 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-88 1142 chr3R 13693027 13693028 chr3R 21907534 21907536 18 8214507 7.5 13.5 10.5 1.6 8214509 chr3R 13693027 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_18_17800001 chr3R_17800001 RAL-88 1143 chr3R 13916316 13916341 chr3R 13916401 13916426 6 84 5.5 5.0 5.2 1.0 110 chr3R 13916316 intergenic not near genes chr3R 13916371 intergenic not near genes chr3R 13916426 intergenic not near genes chr3R_6_13915001 chr3R_13915001 RAL-88 1144 chr3R 14161456 14161486 chr3R 14161547 14161576 10 91 0.5 4.5 2.5 2.9 120 chr3R 14161456 intergenic not near genes chr3R 14161516 intergenic not near genes chr3R 14161576 intergenic not near genes chr3R_10_14160001 chr3R_14160001 RAL-88 1145 chr3R 14193730 14193760 chr3R 14193808 14193838 9 78 5.0 1.5 3.2 2.1 108 chr3R 14193730 intron Dop1R1 - chr3R 14193784 intron Dop1R1 - chr3R 14193838 intron Dop1R1 - chr3R_9_14190001 chr3R_14190001 RAL-88 1146 chr3R 14246393 14246418 chr3R 14247887 14247913 jockey 8 1492 3.0 1.5 2.2 2.5 1520 chr3R 14246393 intergenic not near genes chr3R 14247153 intergenic not near genes chr3R 14247913 intergenic not near genes chr3R_8_14245001 chr3R_14245001 RAL-88 1147 chr3R 14331395 14331405 chr3R 14331494 14331504 5 98 2.0 3.0 2.5 1.4 109 chr3R 14331395 intron NK7.1 - chr3R 14331450 intron NK7.1 - chr3R 14331504 intron NK7.1 - chr3R_5_14330001 chr3R_14330001 RAL-88 1148 chr3R 14364064 14364091 chr3R 14364138 14364155 10 71 2.5 3.0 2.8 2.6 91 chr3R 14364064 intron NK7.1 - chr3R 14364110 intron NK7.1 - chr3R 14364155 intron NK7.1 - chr3R_10_14360001 chr3R_14360001 RAL-88 1149 chr3R 14386020 14386041 chr3R 14386096 14386111 6 78 0.0 2.5 1.2 2.7 91 chr3R 14386020 intergenic not near genes chr3R 14386066 intergenic not near genes chr3R 14386111 intergenic not near genes chr3R_6_14385001 chr3R_14385001 RAL-88 1150 chr3R 14400750 14401047 chr3R 14400905 14401131 6 132 5.5 4.0 4.8 1.0 381 chr3R 14400750 intron cv-c - chr3R 14400940 intron cv-c - chr3R 14401131 intron cv-c - chr3R_6_14400001 chr3R_14400001 RAL-88 1151 chr3R 14401053 14401074 chr3R 14401136 14401158 7 84 3.0 3.0 3.0 1.8 105 chr3R 14401053 intron cv-c - chr3R 14401106 intron cv-c - chr3R 14401158 intron cv-c - chr3R_7_14400001 chr3R_14400001 RAL-88 1152 chr3R 14549805 14549827 chr3R 14549881 14549902 7 75 3.0 2.0 2.5 2.0 97 chr3R 14549805 intron Pde6 - chr3R 14549854 intron Pde6 - chr3R 14549902 intron Pde6 - chr3R_7_14545001 chr3R_14545001 RAL-88 1153 chr3R 14577958 14577973 chr3R 14578074 14578089 5 116 5.0 4.0 4.5 0.9 131 chr3R 14577958 intron stumps + chr3R 14578024 intron stumps + chr3R 14578089 intron stumps + chr3R_5_14575001 chr3R_14575001 RAL-88 1154 chr3R 14612446 14612470 chr3R 14612566 14612590 4 120 4.0 0.0 2.0 1.3 144 chr3R 14612446 intron CG14853 + chr3R 14612518 intron CG14853 + chr3R 14612590 intron CG14853 + chr3R_4_14610001 chr3R_14610001 RAL-88 1155 chr3R 14662322 14662340 chr3R 14662402 14662419 8 80 3.5 2.5 3.0 2.0 97 chr3R 14662322 intron Rad17 - chr3R 14662370 intron Rad17 - chr3R 14662419 exon Rad17 - chr3R_8_14660001 chr3R_14660001 RAL-88 1156 chr3R 14704388 14704417 chr3R 14704464 14704485 7 75 0.0 3.0 1.5 2.8 97 chr3R 14704388 intron kibra - chr3R 14704436 intron kibra - chr3R 14704485 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-88 1157 chr3R 14784877 14784898 chr3R 14784953 14784975 7 77 2.5 5.0 3.8 1.5 98 chr3R 14784877 intron jvl + chr3R 14784926 intron jvl + chr3R 14784975 intron jvl + chr3R_7_14780001 chr3R_14780001 RAL-88 1158 chr3R 15026330 15026347 chr3R 15026416 15026433 4 86 3.5 5.0 4.2 0.8 103 chr3R 15026330 intergenic not near genes chr3R 15026382 intergenic not near genes chr3R 15026433 intergenic not near genes chr3R_4_15025001 chr3R_15025001 RAL-88 1159 chr3R 15048344 15048377 chr3R 15048466 15048499 12 122 3.0 2.5 2.8 3.2 155 chr3R 15048344 intergenic not near genes chr3R 15048422 intergenic not near genes chr3R 15048499 intergenic not near genes chr3R_12_15045001 chr3R_15045001 RAL-88 1160 chr3R 15079824 15079836 chr3R 15080065 15080077 pogo 4 240 0.5 0.5 0.5 2.7 253 chr3R 15079824 3` UTR CG6966 - chr3R 15079950 3` UTR CG6966 - chr3R 15080077 3` UTR CG6966 - chr3R_4_15075001 chr3R_15075001 RAL-88 1161 chr3R 15132059 15132080 chr3R 15135119 15135139 Juan 7 3059 5.5 4.0 4.8 1.2 3080 chr3R 15132059 intergenic CG42788 - chr3R 15133599 intergenic not near genes chr3R 15135139 3` UTR CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-88 1162 chr3R 15162549 15162563 chr3R 15167315 15167331 F-element 4 4768 2.5 0.0 1.2 1.8 4782 chr3R 15162549 intron Gyc88E + chr3R 15164940 intron Gyc88E + chr3R 15167331 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-88 1163 chr3R 15286987 15286988 chr3R 21907534 21907536 12 6620548 11.0 13.5 12.2 0.9 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_12_18595001 chr3R_18595001 RAL-88 1164 chr3R 15416249 15416284 chr3R 15416327 15416335 8 76 2.0 2.0 2.0 2.7 86 chr3R 15416249 3` UTR Atx2 + chr3R 15416292 3` UTR Atx2 + chr3R 15416335 3` UTR Atx2 + chr3R_8_15415001 chr3R_15415001 RAL-88 1165 chr3R 15505626 15505653 chr3R 15505702 15505709 6 73 1.0 3.5 2.2 1.9 83 chr3R 15505626 intergenic not near genes chr3R 15505668 intergenic not near genes chr3R 15505709 intergenic not near genes chr3R_6_15505001 chr3R_15505001 RAL-88 1166 chr3R 15601163 15601196 chr3R 15608685 15608718 412 10 7520 5.0 3.5 4.2 1.9 7555 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_10_15600001 chr3R_15600001 RAL-88 1167 chr3R 15691181 15691331 chr3R 15691286 15691417 7 92 0.0 0.0 0.0 7.0 236 chr3R 15691181 intergenic not near genes chr3R 15691299 intergenic not near genes chr3R 15691417 intergenic not near genes chr3R_7_15690001 chr3R_15690001 RAL-88 1168 chr3R 15773922 15773936 chr3R 15775224 15775238 7 1303 5.5 20.0 12.8 0.5 1316 chr3R 15773922 intergenic CR45206 -,CG4525 + chr3R 15774580 3` UTR,exon CR45206 -,CG4525 + chr3R 15775238 intron,3` UTR CG4525 +,CR45207 - chr3R_7_15770001 chr3R_15770001 RAL-88 1169 chr3R 15790143 15790282 chr3R 15790246 15790400 9 113 3.5 5.0 4.2 1.7 257 chr3R 15790143 exon c(3)G - chr3R 15790272 exon c(3)G - chr3R 15790400 exon c(3)G - chr3R_9_15790001 chr3R_15790001 RAL-88 1170 chr3R 15790381 15790404 chr3R 15790587 15790609 8 202 5.5 14.0 9.8 0.7 228 chr3R 15790381 exon c(3)G - chr3R 15790495 exon c(3)G - chr3R 15790609 exon c(3)G - chr3R_8_15790001 chr3R_15790001 RAL-88 1171 chr3R 15790844 15790854 chr3R 15790960 15790970 4 116 8.5 10.5 9.5 0.4 126 chr3R 15790844 exon c(3)G - chr3R 15790907 intron c(3)G - chr3R 15790970 exon c(3)G - chr3R_4_15790001 chr3R_15790001 RAL-88 1172 chr3R 15844107 15844137 chr3R 15844205 15844235 4 98 1.0 0.0 0.5 2.7 128 chr3R 15844107 3` UTR spn-E + chr3R 15844171 3` UTR spn-E + chr3R 15844235 3` UTR spn-E + chr3R_4_15840001 chr3R_15840001 RAL-88 1173 chr3R 15892660 15892684 chr3R 15892732 15892765 6 79 1.0 1.0 1.0 3.0 105 chr3R 15892660 intron CG14877 - chr3R 15892712 intron CG14877 - chr3R 15892765 intron CG14877 - chr3R_6_15890001 chr3R_15890001 RAL-88 1174 chr3R 15942683 15942698 chr3R 15943062 15943077 4 379 1.0 7.0 4.0 0.8 394 chr3R 15942683 intron Sap47 + chr3R 15942880 intron Sap47 + chr3R 15943077 intron Sap47 + chr3R_4_15940001 chr3R_15940001 RAL-88 1175 chr3R 16028420 16028427 chr3R 16028509 16028519 5 91 0.0 1.5 0.8 2.8 99 chr3R 16028420 intron pnr + chr3R 16028470 intron pnr + chr3R 16028519 intron pnr + chr3R_5_16025001 chr3R_16025001 RAL-88 1176 chr3R 16035090 16035098 chr3R 16035200 16035208 4 110 3.5 1.0 2.2 1.2 118 chr3R 16035090 intron pnr + chr3R 16035149 intron pnr + chr3R 16035208 intron pnr + chr3R_4_16035001 chr3R_16035001 RAL-88 1177 chr3R 16110952 16110965 chr3R 16111023 16111039 8 75 6.5 6.5 6.5 1.1 87 chr3R 16110952 intergenic not near genes chr3R 16110996 intergenic not near genes chr3R 16111039 intergenic not near genes chr3R_8_16110001 chr3R_16110001 RAL-88 1178 chr3R 16195557 16195577 chr3R 16195778 16195798 5 220 1.0 0.0 0.5 3.3 241 chr3R 16195557 intron sra + chr3R 16195678 intron sra + chr3R 16195798 intron sra + chr3R_5_16195001 chr3R_16195001 RAL-88 1179 chr3R 16225090 16225119 chr3R 16225175 16225204 4 84 1.5 2.0 1.8 1.4 114 chr3R 16225090 intergenic not near genes chr3R 16225147 intergenic not near genes chr3R 16225204 intergenic tara + chr3R_4_16225001 chr3R_16225001 RAL-88 1180 chr3R 16472579 16472593 chr3R 16472655 16472664 4 74 5.0 3.5 4.2 0.8 85 chr3R 16472579 intergenic Gyc-89Da + chr3R 16472622 5` UTR Gyc-89Da + chr3R 16472664 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-88 1181 chr3R 16601403 16601434 chr3R 16601495 16601526 4 92 1.5 0.5 1.0 2.0 123 chr3R 16601403 intron CG10345 - chr3R 16601464 intron CG10345 - chr3R 16601526 intron CG10345 - chr3R_4_16600001 chr3R_16600001 RAL-88 1182 chr3R 16708595 16708613 chr3R 16708771 16708789 4 176 0.5 1.5 1.0 2.0 194 chr3R 16708595 intron Ubx - chr3R 16708692 intron Ubx - chr3R 16708789 intron Ubx - chr3R_4_16705001 chr3R_16705001 RAL-88 1183 chr3R 16756336 16756352 chr3R 16762525 16762535 diver 11 6189 2.0 3.5 2.8 2.9 6199 chr3R 16756336 intron bxd - chr3R 16759436 intron bxd - chr3R 16762535 intron bxd - chr3R_11_16755001 chr3R_16755001 RAL-88 1184 chr3R 17012963 17012981 chr3R 17013039 17013057 4 76 1.0 1.5 1.2 1.8 94 chr3R 17012963 intergenic CG8907 + chr3R 17013010 intergenic CG8907 + chr3R 17013057 intergenic not near genes chr3R_4_17010001 chr3R_17010001 RAL-88 1185 chr3R 17184736 17184749 chr3R 17184812 17184825 5 76 1.0 2.5 1.8 1.8 89 chr3R 17184736 intron Mur89F - chr3R 17184780 intron Mur89F - chr3R 17184825 intron Mur89F - chr3R_5_17180001 chr3R_17180001 RAL-88 1186 chr3R 17268678 17268691 chr3R 17268799 17268811 5 121 1.0 3.0 2.0 1.7 133 chr3R 17268678 intergenic not near genes chr3R 17268744 intergenic not near genes chr3R 17268811 intergenic not near genes chr3R_5_17265001 chr3R_17265001 RAL-88 1187 chr3R 17294668 17294698 chr3R 17295096 17295126 BS 11 428 2.5 2.0 2.2 3.4 458 chr3R 17294668 intergenic not near genes chr3R 17294897 intergenic not near genes chr3R 17295126 intergenic not near genes chr3R_11_17290001 chr3R_17290001 RAL-88 1188 chr3R 17346698 17346714 chr3R 17348261 17348272 F-element 4 1562 0.5 4.5 2.5 1.1 1574 chr3R 17346698 intron beat-IIa - chr3R 17347485 intron beat-IIa - chr3R 17348272 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-88 1189 chr3R 17353451 17353475 chr3R 17353528 17353552 4 77 1.5 0.5 1.0 2.0 101 chr3R 17353451 intron beat-IIa - chr3R 17353502 intron beat-IIa - chr3R 17353552 intron beat-IIa - chr3R_4_17350001 chr3R_17350001 RAL-88 1190 chr3R 17394442 17394451 chr3R 17394606 17394611 5 163 3.5 4.0 3.8 1.0 169 chr3R 17394442 intron CREG - chr3R 17394526 intron CREG - chr3R 17394611 5` UTR CREG - chr3R_5_17390001 chr3R_17390001 RAL-88 1191 chr3R 17461202 17461227 chr3R 17461284 17461309 8 81 2.5 3.0 2.8 2.1 107 chr3R 17461202 intergenic not near genes chr3R 17461256 intergenic not near genes chr3R 17461309 intergenic not near genes chr3R_8_17460001 chr3R_17460001 RAL-88 1192 chr3R 17504829 17504844 chr3R 17504989 17505005 6 160 4.0 4.0 4.0 1.2 176 chr3R 17504829 intron Dscam3 - chr3R 17504917 intron Dscam3 - chr3R 17505005 intron Dscam3 - chr3R_6_17500001 chr3R_17500001 RAL-88 1193 chr3R 17517638 17517651 chr3R 17517772 17517785 5 134 3.5 1.5 2.5 1.4 147 chr3R 17517638 intergenic not near genes chr3R 17517712 intergenic CR44349 - chr3R 17517785 intergenic CR44349 - chr3R_5_17515001 chr3R_17515001 RAL-88 1194 chr3R 17521570 17521584 chr3R 17521726 17521744 7 159 0.0 9.0 4.5 1.3 174 chr3R 17521570 intergenic not near genes chr3R 17521657 intergenic not near genes chr3R 17521744 intergenic not near genes chr3R_7_17520001 chr3R_17520001 RAL-88 1195 chr3R 17522033 17522229 chr3R 17522110 17522317 7 81 2.0 3.5 2.8 1.8 284 chr3R 17522033 intergenic not near genes chr3R 17522175 intergenic not near genes chr3R 17522317 intergenic not near genes chr3R_7_17520001 chr3R_17520001 RAL-88 1196 chr3R 17849809 17849836 chr3R 17849986 17850010 4 176 2.5 1.0 1.8 1.4 201 chr3R 17849809 intron tinc + chr3R 17849910 intron tinc + chr3R 17850010 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-88 1197 chr3R 17884749 17884780 chr3R 17884836 17884867 10 86 2.5 2.5 2.5 2.9 118 chr3R 17884749 intron Rim - chr3R 17884808 intron Rim - chr3R 17884867 intron Rim - chr3R_10_17880001 chr3R_17880001 RAL-88 1198 chr3R 17901314 17901319 chr3R 17901389 17901391 4 75 1.5 1.5 1.5 1.6 77 chr3R 17901314 intron Rim - chr3R 17901352 intron Rim - chr3R 17901391 intron Rim - chr3R_4_17900001 chr3R_17900001 RAL-88 1199 chr3R 17925858 17925889 chr3R 17927325 17927356 hobo 5 1467 3.0 5.5 4.2 1.0 1498 chr3R 17925858 intron cpo + chr3R 17926607 intron cpo + chr3R 17927356 intron cpo + chr3R_5_17925001 chr3R_17925001 RAL-88 1200 chr3R 18041759 18041775 chr3R 18041836 18041851 5 75 0.0 0.5 0.2 4.2 92 chr3R 18041759 intergenic not near genes chr3R 18041805 intergenic not near genes chr3R 18041851 intergenic not near genes chr3R_5_18040001 chr3R_18040001 RAL-88 1201 chr3R 18235219 18235245 chr3R 18235395 18235421 6 175 1.5 0.5 1.0 3.0 202 chr3R 18235219 intergenic not near genes chr3R 18235320 intergenic not near genes chr3R 18235421 intergenic not near genes chr3R_6_18235001 chr3R_18235001 RAL-88 1202 chr3R 18379625 18379655 chr3R 18379931 18379961 6 306 2.0 0.0 1.0 3.0 336 chr3R 18379625 intron CG7675 - chr3R 18379793 intron CG7675 - chr3R 18379961 intron CG7675 - chr3R_6_18375001 chr3R_18375001 RAL-88 1203 chr3R 18464325 18464341 chr3R 18464464 18464480 8 139 0.0 4.5 2.2 2.5 155 chr3R 18464325 intron fru - chr3R 18464402 intron fru - chr3R 18464480 intron fru - chr3R_8_18460001 chr3R_18460001 RAL-88 1204 chr3R 18501593 18501628 chr3R 18501674 18501708 6 80 1.5 2.0 1.8 2.1 115 chr3R 18501593 intron fru - chr3R 18501650 intron fru - chr3R 18501708 intron fru - chr3R_6_18500001 chr3R_18500001 RAL-88 1205 chr3R 18537520 18537533 chr3R 18537597 18537612 4 79 3.5 1.5 2.5 1.1 92 chr3R 18537520 intron fru - chr3R 18537566 intron fru - chr3R 18537612 intron fru - chr3R_4_18535001 chr3R_18535001 RAL-88 1206 chr3R 18618268 18618294 chr3R 18618353 18618379 7 85 1.5 2.0 1.8 2.5 111 chr3R 18618268 intron,intron qin +,CG14304 - chr3R 18618324 intron,intron qin +,CG14304 - chr3R 18618379 intron,intron qin +,CG14304 - chr3R_7_18615001 chr3R_18615001 RAL-88 1207 chr3R 18695766 18695773 chr3R 18695850 18695857 5 84 5.0 0.0 2.5 1.4 91 chr3R 18695766 3` UTR CG34282 + chr3R 18695812 intergenic CG34282 + chr3R 18695857 intergenic CG34282 + chr3R_5_18695001 chr3R_18695001 RAL-88 1208 chr3R 18766788 18766806 chr3R 18766866 18766884 6 78 1.5 2.0 1.8 2.1 96 chr3R 18766788 intron CG7720 - chr3R 18766836 intron CG7720 - chr3R 18766884 intron CG7720 - chr3R_6_18765001 chr3R_18765001 RAL-88 1209 chr3R 18781697 18781722 chr3R 18781769 18781797 9 73 2.5 2.5 2.5 2.6 100 chr3R 18781697 intron CG7720 - chr3R 18781747 intron CG7720 - chr3R 18781797 intron CG7720 - chr3R_9_18780001 chr3R_18780001 RAL-88 1210 chr3R 18785866 18785898 chr3R 18785943 18785975 8 77 1.5 2.0 1.8 2.9 109 chr3R 18785866 intron CG7720 - chr3R 18785920 intron CG7720 - chr3R 18785975 intron CG7720 - chr3R_8_18785001 chr3R_18785001 RAL-88 1211 chr3R 18791497 18791517 chr3R 18791576 18791596 8 76 2.5 1.5 2.0 2.7 99 chr3R 18791497 intron CG7720 - chr3R 18791546 intron CG7720 - chr3R 18791596 intron CG7720 - chr3R_8_18790001 chr3R_18790001 RAL-88 1212 chr3R 18812074 18812109 chr3R 18812152 18812187 16 78 3.5 3.0 3.2 3.8 113 chr3R 18812074 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812187 intron CG18208 - chr3R_16_18810001 chr3R_18810001 RAL-88 1213 chr3R 18885931 18885962 chr3R 18886012 18886043 6 80 3.0 1.0 2.0 2.0 112 chr3R 18885931 intergenic not near genes chr3R 18885987 intergenic not near genes chr3R 18886043 intergenic not near genes chr3R_6_18885001 chr3R_18885001 RAL-88 1214 chr3R 18986586 18986615 chr3R 18986666 18986695 6 80 2.5 2.0 2.2 1.9 109 chr3R 18986586 intron gukh + chr3R 18986640 intron gukh + chr3R 18986695 intron gukh + chr3R_6_18985001 chr3R_18985001 RAL-88 1215 chr3R 19078120 19078130 chr3R 19078210 19078221 4 91 6.5 1.0 3.8 0.8 101 chr3R 19078120 intron cdi - chr3R 19078170 intron cdi - chr3R 19078221 intron cdi - chr3R_4_19075001 chr3R_19075001 RAL-88 1216 chr3R 19136408 19136419 chr3R 19139794 19139806 Bari1 4 3387 36.0 6.0 21.0 0.2 3398 chr3R 19136408 exon Cyp12a4 + chr3R 19138107 intergenic not near genes chr3R 19139806 3` UTR Ppcs - chr3R_4_19135001 chr3R_19135001 RAL-88 1217 chr3R 19140265 19140300 chr3R 19140711 19140747 13 445 4.0 5.0 4.5 2.4 482 chr3R 19140265 3` UTR Ppcs - chr3R 19140506 3` UTR Ppcs - chr3R 19140747 3` UTR Ppcs - chr3R_13_19140001 chr3R_19140001 RAL-88 1218 chr3R 19143034 19143063 chr3R 19143120 19143149 11 83 4.0 1.5 2.8 2.9 115 chr3R 19143034 intron Ppcs - chr3R 19143092 intron Ppcs - chr3R 19143149 intron Ppcs - chr3R_11_19140001 chr3R_19140001 RAL-88 1219 chr3R 19490444 19490466 chr3R 19490533 19490549 8 88 3.0 5.0 4.0 1.6 105 chr3R 19490444 intron,intron Dys +,CG15025 - chr3R 19490496 intron,intron Dys +,CG15025 - chr3R 19490549 intron,intron Dys +,CG15025 - chr3R_8_19490001 chr3R_19490001 RAL-88 1220 chr3R 19505934 19505966 chr3R 19506033 19506065 8 99 4.0 1.0 2.5 2.3 131 chr3R 19505934 exon Dys + chr3R 19506000 intron Dys + chr3R 19506065 intron Dys + chr3R_8_19505001 chr3R_19505001 RAL-88 1221 chr3R 19681600 19681630 chr3R 19681690 19681721 8 91 2.0 2.0 2.0 2.7 121 chr3R 19681600 intron Naam + chr3R 19681660 intron Naam + chr3R 19681721 intron Naam + chr3R_8_19680001 chr3R_19680001 RAL-88 1222 chr3R 19683254 19683268 chr3R 19683406 19683421 4 152 5.0 1.5 3.2 1.0 167 chr3R 19683254 intron Naam + chr3R 19683338 intron Naam + chr3R 19683421 intron Naam + chr3R_4_19680001 chr3R_19680001 RAL-88 1223 chr3R 19702322 19702354 chr3R 19702404 19702408 9 77 2.5 2.0 2.2 2.8 86 chr3R 19702322 intergenic not near genes chr3R 19702365 intergenic not near genes chr3R 19702408 intergenic not near genes chr3R_9_19700001 chr3R_19700001 RAL-88 1224 chr3R 19783013 19783041 chr3R 19783124 19783158 6 116 4.0 1.5 2.8 1.6 145 chr3R 19783013 exon CG11407 + chr3R 19783086 3` UTR CG11407 + chr3R 19783158 intergenic CG11407 +,CG11453 + chr3R_6_19780001 chr3R_19780001 RAL-88 1225 chr3R 20059471 20059496 chr3R 20059550 20059576 7 80 2.5 2.5 2.5 2.0 105 chr3R 20059471 intron CG4390 - chr3R 20059524 intron CG4390 - chr3R 20059576 exon CG4390 - chr3R_7_20055001 chr3R_20055001 RAL-88 1226 chr3R 20077042 20077065 chr3R 20077128 20077151 13 85 1.5 1.0 1.2 5.9 109 chr3R 20077042 intergenic not near genes chr3R 20077096 intergenic not near genes chr3R 20077151 intergenic not near genes chr3R_13_20075001 chr3R_20075001 RAL-88 1227 chr3R 20109537 20109567 chr3R 20114743 20114769 copia 4 5205 2.0 1.5 1.8 1.4 5232 chr3R 20109537 intergenic not near genes chr3R 20112153 intergenic not near genes chr3R 20114769 intergenic CG10887 + chr3R_4_20110001 chr3R_20110001 RAL-88 1228 chr3R 20137598 20137627 chr3R 20137688 20137712 8 89 4.5 1.0 2.8 2.1 114 chr3R 20137598 intergenic not near genes chr3R 20137655 intergenic not near genes chr3R 20137712 intergenic not near genes chr3R_8_20135001 chr3R_20135001 RAL-88 1229 chr3R 20151304 20151334 chr3R 20151435 20151465 7 131 0.0 1.5 0.8 3.9 161 chr3R 20151304 intergenic not near genes chr3R 20151384 intergenic not near genes chr3R 20151465 intergenic not near genes chr3R_7_20150001 chr3R_20150001 RAL-88 1230 chr3R 20156703 20156721 chr3R 20165870 20165891 roo 6 9169 2.0 2.0 2.0 2.0 9188 chr3R 20156703 intergenic not near genes chr3R 20161297 intergenic not near genes chr3R 20165891 intergenic not near genes chr3R_6_20160001 chr3R_20160001 RAL-88 1231 chr3R 20205405 20205595 chr3R 20205522 20205716 12 117 1.0 1.5 1.2 5.5 311 chr3R 20205405 intron Nlg4 + chr3R 20205560 intron Nlg4 + chr3R 20205716 intron Nlg4 + chr3R_12_20205001 chr3R_20205001 RAL-88 1232 chr3R 20242579 20242604 chr3R 20242682 20242707 7 103 1.5 0.0 0.8 3.9 128 chr3R 20242579 intron Nlg4 + chr3R 20242643 intron Nlg4 + chr3R 20242707 intron Nlg4 + chr3R_7_20240001 chr3R_20240001 RAL-88 1233 chr3R 20266516 20266542 chr3R 20272987 20273012 Burdock 9 6471 1.0 0.5 0.8 5.0 6496 chr3R 20266516 intron cic + chr3R 20269764 intron cic + chr3R 20273012 intron cic + chr3R_9_20265001 chr3R_20265001 RAL-88 1234 chr3R 20282276 20282298 chr3R 20282352 20282374 4 75 0.5 0.5 0.5 2.7 98 chr3R 20282276 intron cic + chr3R 20282325 intron cic + chr3R 20282374 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-88 1235 chr3R 20331007 20331020 chr3R 20331493 20331506 roo 4 486 1.5 1.5 1.5 1.6 499 chr3R 20331007 intergenic Sirt2 + chr3R 20331256 intergenic Sirt2 + chr3R 20331506 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-88 1236 chr3R 20469301 20469313 chr3R 20469397 20469411 4 98 0.0 0.0 0.0 4.0 110 chr3R 20469301 intron Gfrl - chr3R 20469356 intron Gfrl - chr3R 20469411 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-88 1237 chr3R 20686966 20686987 chr3R 20687400 20687422 6 435 0.0 0.5 0.2 5.0 456 chr3R 20686966 intergenic not near genes chr3R 20687194 intergenic not near genes chr3R 20687422 intergenic not near genes chr3R_6_20685001 chr3R_20685001 RAL-88 1238 chr3R 20703484 20703515 chr3R 20703878 20703909 6 394 0.5 2.5 1.5 2.4 425 chr3R 20703484 intron Oamb - chr3R 20703696 intron Oamb - chr3R 20703909 intron Oamb - chr3R_6_20700001 chr3R_20700001 RAL-88 1239 chr3R 20716811 20716838 chr3R 20717147 20717175 13 336 5.0 4.0 4.5 2.4 364 chr3R 20716811 intergenic not near genes chr3R 20716993 intergenic not near genes chr3R 20717175 intergenic not near genes chr3R_13_20715001 chr3R_20715001 RAL-88 1240 chr3R 20733763 20733774 chr3R 20733855 20733866 7 92 9.0 3.0 6.0 1.0 103 chr3R 20733763 intergenic not near genes chr3R 20733814 intergenic not near genes chr3R 20733866 intergenic not near genes chr3R_7_20730001 chr3R_20730001 RAL-88 1241 chr3R 20764419 20764444 chr3R 20764515 20764540 8 94 2.5 5.5 4.0 1.6 121 chr3R 20764419 intron Syp + chr3R 20764480 intron Syp + chr3R 20764540 intron Syp + chr3R_8_20760001 chr3R_20760001 RAL-88 1242 chr3R 20771704 20771725 chr3R 20771785 20771800 5 78 0.0 2.5 1.2 2.3 96 chr3R 20771704 intron,intron Syp +,Takl1 - chr3R 20771752 intron,intron Syp +,Takl1 - chr3R 20771800 intron,exon Syp +,Takl1 - chr3R_5_20770001 chr3R_20770001 RAL-88 1243 chr3R 20787437 20787456 chr3R 20787528 20787547 7 91 0.5 3.5 2.0 2.3 110 chr3R 20787437 intron Syp + chr3R 20787492 intron Syp + chr3R 20787547 intron Syp + chr3R_7_20785001 chr3R_20785001 RAL-88 1244 chr3R 20854492 20854513 chr3R 20859274 20859303 Doc 4 4788 4.5 3.5 4.0 0.8 4811 chr3R 20854492 intron Ir93a - chr3R 20856898 intron Ir93a - chr3R 20859303 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-88 1245 chr3R 20870250 20870284 chr3R 20870335 20870369 9 85 2.0 2.5 2.2 2.8 119 chr3R 20870250 intergenic not near genes chr3R 20870310 intergenic not near genes chr3R 20870369 intergenic not near genes chr3R_9_20870001 chr3R_20870001 RAL-88 1246 chr3R 21108038 21108062 chr3R 21108299 21108323 7 261 2.5 0.5 1.5 2.8 285 chr3R 21108038 intergenic Sec15 -,rtet + chr3R 21108180 intergenic Sec15 -,rtet + chr3R 21108323 intergenic rtet +,Sec15 - chr3R_7_21105001 chr3R_21105001 RAL-88 1247 chr3R 21141679 21141706 chr3R 21150154 21150186 Tirant 8 8475 3.0 3.0 3.0 2.0 8507 chr3R 21141679 intron SNF4Agamma + chr3R 21145932 intron SNF4Agamma + chr3R 21150186 intron SNF4Agamma + chr3R_8_21145001 chr3R_21145001 RAL-88 1248 chr3R 21161704 21161723 chr3R 21161788 21161807 7 84 1.0 2.5 1.8 2.5 103 chr3R 21161704 intron SNF4Agamma + chr3R 21161756 intron SNF4Agamma + chr3R 21161807 intron SNF4Agamma + chr3R_7_21160001 chr3R_21160001 RAL-88 1249 chr3R 21462866 21462893 chr3R 21463078 21463107 5 214 0.5 1.0 0.8 2.8 241 chr3R 21462866 intergenic not near genes chr3R 21462986 intergenic not near genes chr3R 21463107 intergenic not near genes chr3R_5_21460001 chr3R_21460001 RAL-88 1250 chr3R 21761121 21761153 chr3R 21768513 21768527 mdg1 4 7386 3.0 3.5 3.2 1.0 7406 chr3R 21761121 exon CG42335 + chr3R 21764824 intron CG42335 + chr3R 21768527 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-88 1251 chr3R 21836536 21836569 chr3R 21836628 21836655 7 91 0.0 3.0 1.5 2.8 119 chr3R 21836536 intergenic not near genes chr3R 21836596 intergenic not near genes chr3R 21836655 intergenic not near genes chr3R_7_21835001 chr3R_21835001 RAL-88 1252 chr3R 17389054 17389054 chr3R 21907534 21907534 5 4518480 9.5 13.5 11.5 0.4 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-88 1253 chr3R 21907534 21907534 chr3R 28831801 28831802 14 6924268 13.0 13.0 13.0 1.0 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_14_25365001 chr3R_25365001 RAL-88 1254 chr3R 8339246 8339247 chr3R 21907535 21907535 4 13568288 19.5 13.5 16.5 0.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-88 1255 chr3R 21907535 21907535 chr3R 28831801 28831802 16 6924266 13.0 13.0 13.0 1.1 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_16_25365001 chr3R_25365001 RAL-88 1256 chr3R 21907536 21907536 chr3R 28831801 28831802 20 6924266 13.0 13.0 13.0 1.4 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_20_25365001 chr3R_25365001 RAL-88 1257 chr3R 21985229 21985258 chr3R 21985334 21985363 4 105 0.5 0.0 0.2 3.3 134 chr3R 21985229 intron Eip93F + chr3R 21985296 intron Eip93F + chr3R 21985363 intron Eip93F + chr3R_4_21985001 chr3R_21985001 RAL-88 1258 chr3R 22044845 22044869 chr3R 22044922 22044946 6 77 1.0 2.5 1.8 2.1 101 chr3R 22044845 intron how + chr3R 22044896 intron how + chr3R 22044946 intron how + chr3R_6_22040001 chr3R_22040001 RAL-88 1259 chr3R 22160141 22160174 chr3R 22160239 22160272 9 97 2.0 3.5 2.8 2.4 131 chr3R 22160141 intron SKIP + chr3R 22160206 intron SKIP + chr3R 22160272 intron SKIP + chr3R_9_22160001 chr3R_22160001 RAL-88 1260 chr3R 22234708 22234714 chr3R 22236014 22236032 pogo 4 1315 1.5 2.5 2.0 1.3 1324 chr3R 22234708 intron SKIP + chr3R 22235370 intron SKIP + chr3R 22236032 intron SKIP + chr3R_4_22235001 chr3R_22235001 RAL-88 1261 chr3R 22272360 22272370 chr3R 22272441 22272452 7 82 2.0 3.5 2.8 1.8 92 chr3R 22272360 intron SKIP + chr3R 22272406 intron SKIP + chr3R 22272452 intron SKIP + chr3R_7_22270001 chr3R_22270001 RAL-88 1262 chr3R 22330606 22330625 chr3R 22332320 22332334 6 1710 12.0 24.0 18.0 0.3 1728 chr3R 22330606 intergenic CG7080 +,CG33721 + chr3R 22331470 exon CG33721 + chr3R 22332334 exon CG13862 + chr3R_6_22330001 chr3R_22330001 RAL-88 1263 chr3R 22337786 22337810 chr3R 22337889 22337912 7 102 4.5 0.0 2.2 2.2 126 chr3R 22337786 intron CG5388 - chr3R 22337849 intron CG5388 - chr3R 22337912 intron CG5388 - chr3R_7_22335001 chr3R_22335001 RAL-88 1264 chr3R 22450539 22450577 chr3R 22453179 22453217 NOF 11 2638 2.0 3.0 2.5 3.1 2678 chr3R 22450539 intron CG34376 + chr3R 22451878 intron CG34376 + chr3R 22453217 intron CG34376 + chr3R_11_22450001 chr3R_22450001 RAL-88 1265 chr3R 22538444 22538473 chr3R 22538529 22538558 10 85 1.5 2.0 1.8 3.6 114 chr3R 22538444 intron CG5326 - chr3R 22538501 intron CG5326 - chr3R 22538558 intron CG5326 - chr3R_10_22535001 chr3R_22535001 RAL-88 1266 chr3R 22794283 22794300 chr3R 22794509 22794526 4 226 1.5 2.5 2.0 1.3 243 chr3R 22794283 intergenic CG7029 + chr3R 22794404 intergenic CG7029 + chr3R 22794526 intergenic CG7029 + chr3R_4_22790001 chr3R_22790001 RAL-88 1267 chr3R 22796891 22796916 chr3R 22796984 22797009 9 93 2.5 1.5 2.0 3.0 118 chr3R 22796891 intergenic not near genes chr3R 22796950 intergenic not near genes chr3R 22797009 intergenic not near genes chr3R_9_22795001 chr3R_22795001 RAL-88 1268 chr3R 22803439 22803468 chr3R 22803630 22803657 6 191 3.0 2.5 2.8 1.6 218 chr3R 22803439 intergenic not near genes chr3R 22803548 intergenic not near genes chr3R 22803657 intergenic not near genes chr3R_6_22800001 chr3R_22800001 RAL-88 1269 chr3R 22827414 22827449 chr3R 22827490 22827525 8 74 4.5 3.0 3.8 1.7 111 chr3R 22827414 intergenic CR44350 - chr3R 22827470 intergenic CR44350 - chr3R 22827525 intergenic CR44350 - chr3R_8_22825001 chr3R_22825001 RAL-88 1270 chr3R 22836268 22836288 chr3R 22836756 22836777 6 488 2.5 6.0 4.2 1.2 509 chr3R 22836268 intergenic not near genes chr3R 22836522 intergenic not near genes chr3R 22836777 intergenic not near genes chr3R_6_22835001 chr3R_22835001 RAL-88 1271 chr3R 22847531 22847537 chr3R 22848025 22848030 5 494 2.5 5.0 3.8 1.0 499 chr3R 22847531 intergenic not near genes chr3R 22847780 intergenic not near genes chr3R 22848030 intergenic not near genes chr3R_5_22845001 chr3R_22845001 RAL-88 1272 chr3R 22871437 22871457 chr3R 22871568 22871590 9 132 2.5 0.0 1.2 4.1 153 chr3R 22871437 intergenic not near genes chr3R 22871514 intergenic not near genes chr3R 22871590 intergenic not near genes chr3R_9_22870001 chr3R_22870001 RAL-88 1273 chr3R 22881211 22881216 chr3R 22884917 22884921 Doc 4 3706 1.5 3.0 2.2 1.2 3710 chr3R 22881211 intergenic not near genes chr3R 22883066 intergenic not near genes chr3R 22884921 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-88 1274 chr3R 22971247 22971268 chr3R 22971336 22971361 6 93 2.0 2.5 2.2 1.9 114 chr3R 22971247 intergenic not near genes chr3R 22971304 intergenic not near genes chr3R 22971361 intergenic not near genes chr3R_6_22970001 chr3R_22970001 RAL-88 1275 chr3R 23064176 23064205 chr3R 23064285 23064314 10 109 3.0 4.0 3.5 2.2 138 chr3R 23064176 exon CG17111 - chr3R 23064245 intron CG17111 - chr3R 23064314 exon CG17111 - chr3R_10_23060001 chr3R_23060001 RAL-88 1276 chr3R 23073656 23073682 chr3R 23073745 23073770 4 88 5.5 3.0 4.2 0.8 114 chr3R 23073656 intron CG13830 - chr3R 23073713 intron CG13830 - chr3R 23073770 intron CG13830 - chr3R_4_23070001 chr3R_23070001 RAL-88 1277 chr3R 23079054 23079085 chr3R 23079174 23079205 4 120 1.5 2.0 1.8 1.4 151 chr3R 23079054 intron CG13830 - chr3R 23079130 intron CG13830 - chr3R 23079205 intron CG13830 - chr3R_4_23075001 chr3R_23075001 RAL-88 1278 chr3R 23086121 23086140 chr3R 23086250 23086271 4 130 1.0 6.5 3.8 0.8 150 chr3R 23086121 intron CG13830 - chr3R 23086196 intron CG13830 - chr3R 23086271 intron CG13830 - chr3R_4_23085001 chr3R_23085001 RAL-88 1279 chr3R 23100157 23100437 chr3R 23100242 23100509 11 82 2.0 3.5 2.8 2.9 352 chr3R 23100157 intron,exon CG13830 -,CG6738 + chr3R 23100333 intron,exon CG13830 -,CG6738 + chr3R 23100509 intron,exon CG13830 -,CG6738 + chr3R_11_23100001 chr3R_23100001 RAL-88 1280 chr3R 23241272 23241305 chr3R 23241355 23241369 10 79 3.5 2.0 2.8 2.6 97 chr3R 23241272 intron CG4467 - chr3R 23241320 intron CG4467 - chr3R 23241369 intron CG4467 - chr3R_10_23240001 chr3R_23240001 RAL-88 1281 chr3R 23335437 23335458 chr3R 23335515 23335536 5 78 2.0 2.0 2.0 1.7 99 chr3R 23335437 intron pnt - chr3R 23335486 intron pnt - chr3R 23335536 intron pnt - chr3R_5_23335001 chr3R_23335001 RAL-88 1282 chr3R 23360182 23360213 chr3R 23360258 23360289 6 76 0.0 1.5 0.8 3.3 107 chr3R 23360182 3` UTR RpS3 + chr3R 23360236 intergenic RpS3 + chr3R 23360289 intergenic RpS3 + chr3R_6_23360001 chr3R_23360001 RAL-88 1283 chr3R 23421976 23422007 chr3R 23422060 23422092 6 83 4.0 2.5 3.2 1.4 116 chr3R 23421976 intron CG4374 - chr3R 23422034 intron CG4374 - chr3R 23422092 intron CG4374 - chr3R_6_23420001 chr3R_23420001 RAL-88 1284 chr3R 23558406 23558428 chr3R 23560187 23560209 Bari1 6 1781 0.5 2.5 1.5 2.4 1803 chr3R 23558406 intron beat-IV + chr3R 23559308 intron beat-IV + chr3R 23560209 intron beat-IV + chr3R_6_23555001 chr3R_23555001 RAL-88 1285 chr3R 23684698 23684728 chr3R 23685184 23685192 roo 8 479 2.5 3.0 2.8 2.1 494 chr3R 23684698 exon CG18754 + chr3R 23684945 intron CG18754 + chr3R 23685192 exon CG18754 + chr3R_8_23680001 chr3R_23680001 RAL-88 1286 chr3R 23835409 23835436 chr3R 23844559 23844586 roo 6 9150 3.0 1.0 2.0 2.0 9177 chr3R 23835409 intron CG34355 + chr3R 23839998 intron CG34355 + chr3R 23844586 intron CG34355 + chr3R_6_23835001 chr3R_23835001 RAL-88 1287 chr3R 23888083 23888106 chr3R 23888169 23888192 4 86 2.0 1.0 1.5 1.6 109 chr3R 23888083 intron Pli - chr3R 23888138 intron Pli - chr3R 23888192 intron Pli - chr3R_4_23885001 chr3R_23885001 RAL-88 1288 chr3R 23915273 23915308 chr3R 23915364 23915392 7 89 1.0 4.0 2.5 2.0 119 chr3R 23915273 intron sba - chr3R 23915332 intron sba - chr3R 23915392 intron sba - chr3R_7_23915001 chr3R_23915001 RAL-88 1289 chr3R 23944911 23944935 chr3R 23944996 23945020 8 85 3.0 3.0 3.0 2.0 109 chr3R 23944911 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_8_23940001 chr3R_23940001 RAL-88 1290 chr3R 24025579 24025597 chr3R 24025658 24025663 4 76 2.5 2.5 2.5 1.1 84 chr3R 24025579 intron KrT95D - chr3R 24025621 intron KrT95D - chr3R 24025663 intron KrT95D - chr3R_4_24025001 chr3R_24025001 RAL-88 1291 chr3R 24072085 24072099 chr3R 24072522 24072536 jockey 4 438 5.0 0.0 2.5 1.1 451 chr3R 24072085 intron 4EHP - chr3R 24072310 intron 4EHP - chr3R 24072536 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-88 1292 chr3R 24076916 24076942 chr3R 24078383 24078408 hobo 7 1466 5.0 3.5 4.2 1.3 1492 chr3R 24076916 intron 4EHP - chr3R 24077662 intron 4EHP - chr3R 24078408 intron 4EHP - chr3R_7_24075001 chr3R_24075001 RAL-88 1293 chr3R 24207218 24207247 chr3R 24212294 24212320 flea 8 5075 3.0 7.0 5.0 1.3 5102 chr3R 24207218 intron twin - chr3R 24209769 intron twin - chr3R 24212320 intron twin - chr3R_8_24205001 chr3R_24205001 RAL-88 1294 chr3R 24376290 24376296 chr3R 24376384 24376390 5 94 5.0 2.5 3.8 1.0 100 chr3R 24376290 intergenic not near genes chr3R 24376340 intergenic not near genes chr3R 24376390 intergenic CG33342 + chr3R_5_24375001 chr3R_24375001 RAL-88 1295 chr3R 21907535 21907536 chr3R 24389465 24389465 5 2481930 13.0 8.5 10.8 0.4 2481930 chr3R 21907535 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_5_23145001 chr3R_23145001 RAL-88 1296 chr3R 24433481 24433495 chr3R 24433560 24433574 6 78 1.0 3.5 2.2 1.9 93 chr3R 24433481 intron nAChRalpha1 - chr3R 24433528 intron nAChRalpha1 - chr3R 24433574 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-88 1297 chr3R 24527803 24527818 chr3R 24527894 24527909 4 90 1.5 2.0 1.8 1.4 106 chr3R 24527803 intergenic CG6607 +,CG13618 + chr3R 24527856 intergenic CG6607 +,CG13618 + chr3R 24527909 intergenic CG6607 +,CG13618 + chr3R_4_24525001 chr3R_24525001 RAL-88 1298 chr3R 24667608 24667629 chr3R 24667685 24667706 4 77 0.0 0.0 0.0 4.0 98 chr3R 24667608 intron slo + chr3R 24667657 intron slo + chr3R 24667706 intron slo + chr3R_4_24665001 chr3R_24665001 RAL-88 1299 chr3R 24671223 24671249 chr3R 24671299 24671315 7 70 2.0 1.5 1.8 2.5 92 chr3R 24671223 intron slo + chr3R 24671269 intron slo + chr3R 24671315 intron slo + chr3R_7_24670001 chr3R_24670001 RAL-88 1300 chr3R 24730103 24730119 chr3R 24732472 24732491 Doc 5 2371 3.5 0.5 2.0 1.7 2388 chr3R 24730103 intron tok + chr3R 24731297 intron tok + chr3R 24732491 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-88 1301 chr3R 24785093 24785111 chr3R 24785169 24785187 6 74 0.5 4.0 2.2 1.9 94 chr3R 24785093 3` UTR CG5805 - chr3R 24785140 3` UTR CG5805 - chr3R 24785187 3` UTR CG5805 - chr3R_6_24785001 chr3R_24785001 RAL-88 1302 chr3R 24927131 24927154 chr3R 24931921 24931945 Doc 11 4790 3.0 4.0 3.5 2.4 4814 chr3R 24927131 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931945 intergenic CG11771 + chr3R_11_24925001 chr3R_24925001 RAL-88 1303 chr3R 25268059 25268066 chr3R 25272650 25272655 5 4591 7.5 15.0 11.2 0.4 4596 chr3R 25268059 intron CR45214 - chr3R 25270357 exon,5` UTR CG11889 +,CG11891 + chr3R 25272655 3` UTR,exon CG11889 +,CG11891 + chr3R_5_25270001 chr3R_25270001 RAL-88 1304 chr3R 25465055 25465059 chr3R 25465132 25465136 5 77 2.5 0.0 1.2 2.3 81 chr3R 25465055 intron Fur1 - chr3R 25465096 intron Fur1 - chr3R 25465136 intron Fur1 - chr3R_5_25465001 chr3R_25465001 RAL-88 1305 chr3R 25470700 25470716 chr3R 25470820 25470836 7 120 3.5 2.0 2.8 1.8 136 chr3R 25470700 intron Fur1 - chr3R 25470768 intron Fur1 - chr3R 25470836 intron Fur1 - chr3R_7_25470001 chr3R_25470001 RAL-88 1306 chr3R 25594059 25594075 chr3R 25594245 25594262 5 187 2.0 2.0 2.0 1.7 203 chr3R 25594059 intron,intron msi +,ymp - chr3R 25594160 intron,intron msi +,ymp - chr3R 25594262 intron,intron msi +,ymp - chr3R_5_25590001 chr3R_25590001 RAL-88 1307 chr3R 25689131 25689164 chr3R 25689239 25689272 12 107 4.0 5.0 4.5 2.2 141 chr3R 25689131 intergenic not near genes chr3R 25689202 intergenic not near genes chr3R 25689272 intergenic not near genes chr3R_12_25685001 chr3R_25685001 RAL-88 1308 chr3R 25782021 25782046 chr3R 25782094 25782122 11 72 5.5 1.0 3.2 2.6 101 chr3R 25782021 intergenic not near genes chr3R 25782072 intergenic not near genes chr3R 25782122 intergenic not near genes chr3R_11_25780001 chr3R_25780001 RAL-88 1309 chr3R 25832699 25832718 chr3R 25841881 25841900 roo 11 9182 4.0 1.5 2.8 2.9 9201 chr3R 25832699 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841900 exon alpha4GT2 + chr3R_11_25835001 chr3R_25835001 RAL-88 1310 chr3R 25843635 25843663 chr3R 25843765 25843793 5 130 1.0 0.0 0.5 3.3 158 chr3R 25843635 intergenic CR45653 + chr3R 25843714 intergenic CR45653 + chr3R 25843793 intergenic CR45653 + chr3R_5_25840001 chr3R_25840001 RAL-88 1311 chr3R 26108824 26108831 chr3R 26117407 26117414 Tirant 4 8582 2.0 0.0 1.0 2.0 8590 chr3R 26108824 5` UTR CG31324 + chr3R 26113119 intron CG31324 + chr3R 26117414 intron CG31324 + chr3R_4_26110001 chr3R_26110001 RAL-88 1312 chr3R 26166176 26166196 chr3R 26166262 26166271 6 84 1.5 2.5 2.0 2.0 95 chr3R 26166176 intergenic not near genes chr3R 26166224 intergenic not near genes chr3R 26166271 intergenic not near genes chr3R_6_26165001 chr3R_26165001 RAL-88 1313 chr3R 26235492 26235504 chr3R 26235574 26235582 5 81 1.5 3.0 2.2 1.6 90 chr3R 26235492 5` UTR CR42745 + chr3R 26235537 5` UTR CR42745 + chr3R 26235582 5` UTR CR42745 + chr3R_5_26235001 chr3R_26235001 RAL-88 1314 chr3R 26241251 26241275 chr3R 26241342 26241366 5 91 2.5 1.0 1.8 1.8 115 chr3R 26241251 intron CR42745 + chr3R 26241308 intron CR42745 + chr3R 26241366 intron CR42745 + chr3R_5_26240001 chr3R_26240001 RAL-88 1315 chr3R 26294721 26294750 chr3R 26294798 26294828 14 76 3.5 3.5 3.5 3.1 107 chr3R 26294721 intergenic not near genes chr3R 26294774 intergenic not near genes chr3R 26294828 intergenic not near genes chr3R_14_26290001 chr3R_26290001 RAL-88 1316 chr3R 26298661 26298677 chr3R 26299152 26299187 5 506 14.0 14.5 14.2 0.3 526 chr3R 26298661 intergenic not near genes chr3R 26298924 intergenic not near genes chr3R 26299187 intergenic not near genes chr3R_5_26295001 chr3R_26295001 RAL-88 1317 chr3R 26368430 26368439 chr3R 26369059 26369070 4 631 4.0 1.5 2.8 1.1 640 chr3R 26368430 intergenic not near genes chr3R 26368750 intergenic not near genes chr3R 26369070 intergenic not near genes chr3R_4_26365001 chr3R_26365001 RAL-88 1318 chr3R 26368442 26368460 chr3R 26369057 26369092 9 628 2.0 1.5 1.8 3.2 650 chr3R 26368442 intergenic not near genes chr3R 26368767 intergenic not near genes chr3R 26369092 intergenic not near genes chr3R_9_26365001 chr3R_26365001 RAL-88 1319 chr3R 26376323 26376352 chr3R 26385483 26385512 roo 8 9158 3.5 0.0 1.8 2.9 9189 chr3R 26376323 intergenic not near genes chr3R 26380918 intergenic not near genes chr3R 26385512 intergenic not near genes chr3R_8_26380001 chr3R_26380001 RAL-88 1320 chr3R 26482358 26482390 chr3R 26482434 26482468 5 75 2.5 2.0 2.2 1.6 110 chr3R 26482358 intron plum - chr3R 26482413 intron plum - chr3R 26482468 intron plum - chr3R_5_26480001 chr3R_26480001 RAL-88 1321 chr3R 26547537 26547545 chr3R 26547642 26547651 4 106 3.5 8.5 6.0 0.6 114 chr3R 26547537 intron scrib + chr3R 26547594 intron scrib + chr3R 26547651 intron scrib + chr3R_4_26545001 chr3R_26545001 RAL-88 1322 chr3R 26558337 26558361 chr3R 26565648 26565673 Stalker4 4 7310 2.0 3.5 2.8 1.1 7336 chr3R 26558337 intron scrib + chr3R 26562005 intron scrib + chr3R 26565673 intron scrib + chr3R_4_26560001 chr3R_26560001 RAL-88 1323 chr3R 26642729 26642758 chr3R 26643122 26643152 jockey 6 394 3.0 1.5 2.2 1.9 423 chr3R 26642729 intergenic not near genes chr3R 26642940 intergenic not near genes chr3R 26643152 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-88 1324 chr3R 26660647 26660669 chr3R 26660730 26660745 6 82 5.5 2.5 4.0 1.2 98 chr3R 26660647 intron beat-VII - chr3R 26660696 intron beat-VII - chr3R 26660745 intron beat-VII - chr3R_6_26660001 chr3R_26660001 RAL-88 1325 chr3R 26710829 26710854 chr3R 26710913 26710938 5 84 1.5 1.5 1.5 2.0 109 chr3R 26710829 intron amon - chr3R 26710884 intron amon - chr3R 26710938 intron amon - chr3R_5_26710001 chr3R_26710001 RAL-88 1326 chr3R 26770240 26770273 chr3R 26770317 26770350 9 76 1.5 1.5 1.5 3.6 110 chr3R 26770240 intergenic CR45563 + chr3R 26770295 intergenic CR45563 + chr3R 26770350 intergenic not near genes chr3R_9_26770001 chr3R_26770001 RAL-88 1327 chr3R 26810553 26810578 chr3R 26811038 26811063 roo 7 485 4.5 4.5 4.5 1.3 510 chr3R 26810553 intron Tl + chr3R 26810808 intron Tl + chr3R 26811063 intron Tl + chr3R_7_26810001 chr3R_26810001 RAL-88 1328 chr3R 27019509 27019531 chr3R 27019605 27019617 5 94 4.0 3.5 3.8 1.0 108 chr3R 27019509 intron,exon RYa-R +,CG17191 - chr3R 27019563 intron,exon RYa-R +,CG17191 - chr3R 27019617 intron,exon RYa-R +,CG17191 - chr3R_5_27015001 chr3R_27015001 RAL-88 1329 chr3R 27028725 27028749 chr3R 27028804 27028828 7 79 1.0 3.0 2.0 2.3 103 chr3R 27028725 intron RYa-R + chr3R 27028776 intron RYa-R + chr3R 27028828 intron RYa-R + chr3R_7_27025001 chr3R_27025001 RAL-88 1330 chr3R 27107161 27107186 chr3R 27107385 27107410 10 223 0.5 4.0 2.2 3.1 249 chr3R 27107161 intergenic not near genes chr3R 27107286 intergenic not near genes chr3R 27107410 intergenic not near genes chr3R_10_27105001 chr3R_27105001 RAL-88 1331 chr3R 27140515 27140548 chr3R 27148124 27148158 412 18 7609 3.0 4.0 3.5 4.0 7643 chr3R 27140515 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_18_27140001 chr3R_27140001 RAL-88 1332 chr3R 27156727 27156734 chr3R 27156781 27156809 4 70 2.5 0.0 1.2 1.8 82 chr3R 27156727 intron Men-b + chr3R 27156768 intron Men-b + chr3R 27156809 intron Men-b + chr3R_4_27155001 chr3R_27155001 RAL-88 1333 chr3R 27218335 27218368 chr3R 27218415 27218423 13 77 2.0 1.5 1.8 4.6 88 chr3R 27218335 intergenic CR34006 - chr3R 27218379 intergenic CR34006 - chr3R 27218423 intergenic CR34006 - chr3R_13_27215001 chr3R_27215001 RAL-88 1334 chr3R 27218711 27218736 chr3R 27218797 27218822 7 86 0.5 3.0 1.8 2.5 111 chr3R 27218711 intergenic not near genes chr3R 27218766 intergenic not near genes chr3R 27218822 intergenic not near genes chr3R_7_27215001 chr3R_27215001 RAL-88 1335 chr3R 27327426 27327452 chr3R 27327505 27327531 5 79 3.0 2.0 2.5 1.4 105 chr3R 27327426 intergenic not near genes chr3R 27327478 intergenic not near genes chr3R 27327531 intergenic not near genes chr3R_5_27325001 chr3R_27325001 RAL-88 1336 chr3R 27329474 27329492 chr3R 27329551 27329569 5 77 3.0 2.0 2.5 1.4 95 chr3R 27329474 intergenic CG3330 - chr3R 27329522 intergenic CG3330 - chr3R 27329569 intergenic CG3330 - chr3R_5_27325001 chr3R_27325001 RAL-88 1337 chr3R 27342795 27342824 chr3R 27351376 27351405 Tirant 9 8579 2.0 2.5 2.2 2.8 8610 chr3R 27342795 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_9_27345001 chr3R_27345001 RAL-88 1338 chr3R 27397243 27397248 chr3R 27397319 27397323 4 75 0.5 4.5 2.5 1.1 80 chr3R 27397243 intron side - chr3R 27397283 intron side - chr3R 27397323 intron side - chr3R_4_27395001 chr3R_27395001 RAL-88 1339 chr3R 27479162 27479186 chr3R 27479269 27479297 7 108 1.0 2.0 1.5 2.8 135 chr3R 27479162 exon Cyp6a18 + chr3R 27479230 exon Cyp6a18 + chr3R 27479297 exon Cyp6a18 + chr3R_7_27475001 chr3R_27475001 RAL-88 1340 chr3R 27594737 27594771 chr3R 27594822 27594854 7 84 2.0 2.5 2.2 2.2 117 chr3R 27594737 intron CG5639 - chr3R 27594796 intron CG5639 - chr3R 27594854 intron CG5639 - chr3R_7_27590001 chr3R_27590001 RAL-88 1341 chr3R 27718586 27718600 chr3R 27718664 27718679 5 77 3.0 3.5 3.2 1.2 93 chr3R 27718586 intergenic not near genes chr3R 27718632 intergenic not near genes chr3R 27718679 intergenic not near genes chr3R_5_27715001 chr3R_27715001 RAL-88 1342 chr3R 27779268 27779285 chr3R 27779348 27779365 4 80 3.0 5.0 4.0 0.8 97 chr3R 27779268 exon CG34353 - chr3R 27779316 intron CG34353 - chr3R 27779365 intron CG34353 - chr3R_4_27775001 chr3R_27775001 RAL-88 1343 chr3R 27799944 27799962 chr3R 27800026 27800044 5 81 3.5 2.0 2.8 1.3 100 chr3R 27799944 intron CG34353 - chr3R 27799994 intron CG34353 - chr3R 27800044 intron CG34353 - chr3R_5_27795001 chr3R_27795001 RAL-88 1344 chr3R 27856765 27856793 chr3R 27858248 27858275 hopper2 6 1483 1.5 5.0 3.2 1.4 1510 chr3R 27856765 intron CG34353 - chr3R 27857520 intron CG34353 - chr3R 27858275 intron CG34353 - chr3R_6_27855001 chr3R_27855001 RAL-88 1345 chr3R 27860855 27860881 chr3R 27861264 27861290 11 409 4.0 5.0 4.5 2.0 435 chr3R 27860855 intron CG34353 - chr3R 27861072 intron CG34353 - chr3R 27861290 intron CG34353 - chr3R_11_27860001 chr3R_27860001 RAL-88 1346 chr3R 27875702 27875727 chr3R 27882757 27882782 297 7 7055 3.5 4.0 3.8 1.5 7080 chr3R 27875702 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882782 intron CG34353 - chr3R_7_27875001 chr3R_27875001 RAL-88 1347 chr3R 27886447 27886481 chr3R 27886557 27886582 4 108 0.0 2.0 1.0 2.0 135 chr3R 27886447 intron CG34353 - chr3R 27886514 intron CG34353 - chr3R 27886582 intron CG34353 - chr3R_4_27885001 chr3R_27885001 RAL-88 1348 chr3R 28054442 28054475 chr3R 28054518 28054551 8 76 3.0 4.0 3.5 1.8 109 chr3R 28054442 intron CG34362 + chr3R 28054496 intron CG34362 + chr3R 28054551 intron CG34362 + chr3R_8_28050001 chr3R_28050001 RAL-88 1349 chr3R 28068491 28068524 chr3R 28073933 28073966 I-element 10 5441 2.0 3.5 2.8 2.6 5475 chr3R 28068491 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073966 intron CG34362 + chr3R_10_28070001 chr3R_28070001 RAL-88 1350 chr3R 28080729 28080746 chr3R 28080819 28080836 4 90 5.0 2.0 3.5 0.9 107 chr3R 28080729 intron CG34362 + chr3R 28080782 intron CG34362 + chr3R 28080836 intron CG34362 + chr3R_4_28080001 chr3R_28080001 RAL-88 1351 chr3R 28126738 28126760 chr3R 28126824 28126846 5 86 2.0 3.5 2.8 1.3 108 chr3R 28126738 intergenic not near genes chr3R 28126792 intergenic not near genes chr3R 28126846 intergenic not near genes chr3R_5_28125001 chr3R_28125001 RAL-88 1352 chr3R 28131436 28131440 chr3R 28131617 28131622 4 182 1.5 0.5 1.0 2.0 186 chr3R 28131436 intergenic not near genes chr3R 28131529 intergenic not near genes chr3R 28131622 intergenic not near genes chr3R_4_28130001 chr3R_28130001 RAL-88 1353 chr3R 28144274 28144293 chr3R 28144365 28144380 6 90 1.0 1.5 1.2 2.7 106 chr3R 28144274 intergenic not near genes chr3R 28144327 intergenic not near genes chr3R 28144380 intergenic not near genes chr3R_6_28140001 chr3R_28140001 RAL-88 1354 chr3R 28173674 28173699 chr3R 28181104 28181129 mdg1 5 7430 1.5 1.0 1.2 2.3 7455 chr3R 28173674 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181129 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-88 1355 chr3R 28253349 28253356 chr3R 28255848 28255866 jockey 4 2507 1.5 1.0 1.2 1.8 2517 chr3R 28253349 intergenic not near genes chr3R 28254608 intergenic not near genes chr3R 28255866 intergenic not near genes chr3R_4_28250001 chr3R_28250001 RAL-88 1356 chr3R 28282987 28283016 chr3R 28283616 28283645 6 629 2.0 1.0 1.5 2.4 658 chr3R 28282987 exon CG34436 + chr3R 28283316 exon CG34436 + chr3R 28283645 intergenic CG34437 +,CG34436 + chr3R_6_28280001 chr3R_28280001 RAL-88 1357 chr3R 28390114 28390136 chr3R 28390192 28390213 4 78 5.0 3.5 4.2 0.8 99 chr3R 28390114 intergenic not near genes chr3R 28390164 intergenic not near genes chr3R 28390213 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-88 1358 chr3R 28390137 28390147 chr3R 28390189 28390225 5 71 3.0 3.0 3.0 1.2 88 chr3R 28390137 intergenic not near genes chr3R 28390181 intergenic not near genes chr3R 28390225 intergenic not near genes chr3R_5_28390001 chr3R_28390001 RAL-88 1359 chr3R 28393698 28393732 chr3R 28393798 28393832 7 100 1.5 2.0 1.8 2.5 134 chr3R 28393698 intergenic not near genes chr3R 28393765 intergenic not near genes chr3R 28393832 intergenic not near genes chr3R_7_28390001 chr3R_28390001 RAL-88 1360 chr3R 28410981 28411006 chr3R 28411073 28411098 6 92 1.0 3.0 2.0 2.0 117 chr3R 28410981 intergenic not near genes chr3R 28411040 intergenic not near genes chr3R 28411098 intergenic not near genes chr3R_6_28410001 chr3R_28410001 RAL-88 1361 chr3R 28424172 28424203 chr3R 28424260 28424290 8 88 1.0 2.5 1.8 2.9 118 chr3R 28424172 intron beat-VI + chr3R 28424231 intron beat-VI + chr3R 28424290 intron beat-VI + chr3R_8_28420001 chr3R_28420001 RAL-88 1362 chr3R 28478425 28478440 chr3R 28478505 28478520 7 80 3.5 3.0 3.2 1.7 95 chr3R 28478425 intergenic not near genes chr3R 28478472 intergenic not near genes chr3R 28478520 intergenic not near genes chr3R_7_28475001 chr3R_28475001 RAL-88 1363 chr3R 28479147 28479168 chr3R 28479230 28479251 7 82 1.0 0.5 0.8 3.9 104 chr3R 28479147 intergenic not near genes chr3R 28479199 intergenic not near genes chr3R 28479251 intergenic not near genes chr3R_7_28475001 chr3R_28475001 RAL-88 1364 chr3R 28484353 28484374 chr3R 28486270 28486291 28 1918 21.5 46.0 33.8 0.8 1938 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486291 intergenic CG1894 + chr3R_28_28485001 chr3R_28485001 RAL-88 1365 chr3R 28666485 28666515 chr3R 28666632 28666663 8 147 6.5 5.0 5.8 1.2 178 chr3R 28666485 intergenic not near genes chr3R 28666574 intergenic not near genes chr3R 28666663 intergenic not near genes chr3R_8_28665001 chr3R_28665001 RAL-88 1366 chr3R 28792878 28792899 chr3R 28797971 28797994 jockey 6 5094 2.5 4.0 3.2 1.4 5116 chr3R 28792878 intergenic not near genes chr3R 28795436 intergenic not near genes chr3R 28797994 intergenic not near genes chr3R_6_28795001 chr3R_28795001 RAL-88 1367 chr3R 21907534 21907536 chr3R 28831799 28831801 38 6924266 13.0 11.5 12.2 2.9 6924267 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831801 intron WASp - chr3R_38_25365001 chr3R_25365001 RAL-88 1368 chr3R 21907534 21907536 chr3R 28831802 28831802 29 6924267 13.0 13.0 13.0 2.1 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_29_25365001 chr3R_25365001 RAL-88 1369 chr3R 28938133 28938152 chr3R 28938216 28938240 5 87 2.0 1.5 1.8 1.8 107 chr3R 28938133 intron CG14521 - chr3R 28938186 intron CG14521 - chr3R 28938240 intron CG14521 - chr3R_5_28935001 chr3R_28935001 RAL-88 1370 chr3R 28952708 28952718 chr3R 28953286 28953299 8 580 3.5 2.0 2.8 2.1 591 chr3R 28952708 intron CG14521 - chr3R 28953004 intron CG14521 - chr3R 28953299 intron CG14521 - chr3R_8_28950001 chr3R_28950001 RAL-88 1371 chr3R 29054246 29054276 chr3R 29054331 29054361 9 85 0.0 2.0 1.0 4.5 115 chr3R 29054246 intergenic CG11843 +,CG11842 + chr3R 29054304 intergenic CG11843 +,CG11842 + chr3R 29054361 5` UTR CG11843 + chr3R_9_29050001 chr3R_29050001 RAL-88 1372 chr3R 29128472 29128498 chr3R 29128576 29128602 7 104 1.5 3.5 2.5 2.0 130 chr3R 29128472 intergenic dgt6 -,CG11880 + chr3R 29128537 intergenic dgt6 -,CG11880 + chr3R 29128602 3` UTR dgt6 - chr3R_7_29125001 chr3R_29125001 RAL-88 1373 chr3R 29156222 29156243 chr3R 29156305 29156327 5 84 3.0 2.0 2.5 1.4 105 chr3R 29156222 intron Rpn2 + chr3R 29156274 intron Rpn2 + chr3R 29156327 exon Rpn2 + chr3R_5_29155001 chr3R_29155001 RAL-88 1374 chr3R 29213065 29213091 chr3R 29213148 29213174 6 83 1.0 5.0 3.0 1.5 109 chr3R 29213065 intergenic not near genes chr3R 29213120 intergenic not near genes chr3R 29213174 intergenic not near genes chr3R_6_29210001 chr3R_29210001 RAL-88 1375 chr3R 29237267 29237282 chr3R 29239287 29239303 6 2020 6.0 7.5 6.8 0.8 2036 chr3R 29237267 exon CG11951 - chr3R 29238285 intron CG11951 - chr3R 29239303 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-88 1376 chr3R 29406630 29406646 chr3R 29407916 29407930 jockey 9 1286 3.0 4.5 3.8 1.9 1300 chr3R 29406630 intron Ptp99A + chr3R 29407280 intron Ptp99A + chr3R 29407930 intron Ptp99A + chr3R_9_29405001 chr3R_29405001 RAL-88 1377 chr3R 29432774 29432802 chr3R 29432848 29432879 8 74 2.0 2.0 2.0 2.7 105 chr3R 29432774 intron Ptp99A + chr3R 29432826 intron Ptp99A + chr3R 29432879 intron Ptp99A + chr3R_8_29430001 chr3R_29430001 RAL-88 1378 chr3R 29449359 29449384 chr3R 29449437 29449462 7 78 1.5 3.0 2.2 2.2 103 chr3R 29449359 intron Ptp99A + chr3R 29449410 intron Ptp99A + chr3R 29449462 intron Ptp99A + chr3R_7_29445001 chr3R_29445001 RAL-88 1379 chr3R 29453756 29453781 chr3R 29453832 29453857 6 76 0.0 3.5 1.8 2.1 101 chr3R 29453756 intron Ptp99A + chr3R 29453806 intron Ptp99A + chr3R 29453857 intron Ptp99A + chr3R_6_29450001 chr3R_29450001 RAL-88 1380 chr3R 29472011 29472036 chr3R 29472100 29472129 15 91 3.5 0.0 1.8 5.4 118 chr3R 29472011 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472129 intron Ptp99A + chr3R_15_29470001 chr3R_29470001 RAL-88 1381 chr3R 29546757 29546783 chr3R 29546832 29546859 5 74 3.0 3.0 3.0 1.2 102 chr3R 29546757 intergenic not near genes chr3R 29546808 intergenic not near genes chr3R 29546859 intergenic not near genes chr3R_5_29545001 chr3R_29545001 RAL-88 1382 chr3R 29573585 29573606 chr3R 29573895 29573921 9 313 1.5 3.5 2.5 2.6 336 chr3R 29573585 intergenic not near genes chr3R 29573753 intergenic not near genes chr3R 29573921 intergenic not near genes chr3R_9_29570001 chr3R_29570001 RAL-88 1383 chr3R 29581554 29581568 chr3R 29581635 29581646 8 81 3.0 1.5 2.2 2.5 92 chr3R 29581554 intergenic not near genes chr3R 29581600 intergenic not near genes chr3R 29581646 intergenic not near genes chr3R_8_29580001 chr3R_29580001 RAL-88 1384 chr3R 29622691 29622722 chr3R 29622876 29622907 6 185 0.5 0.5 0.5 4.0 216 chr3R 29622691 intergenic not near genes chr3R 29622799 intergenic not near genes chr3R 29622907 intergenic not near genes chr3R_6_29620001 chr3R_29620001 RAL-88 1385 chr3R 29645829 29645856 chr3R 29645910 29645925 7 79 2.5 1.5 2.0 2.3 96 chr3R 29645829 intron Dop1R2 - chr3R 29645877 intron Dop1R2 - chr3R 29645925 intron Dop1R2 - chr3R_7_29645001 chr3R_29645001 RAL-88 1386 chr3R 29667968 29667995 chr3R 29668065 29668092 7 97 2.0 2.5 2.2 2.2 124 chr3R 29667968 intron ppk20 - chr3R 29668030 exon ppk20 - chr3R 29668092 exon ppk20 - chr3R_7_29665001 chr3R_29665001 RAL-88 1387 chr3R 29670812 29670833 chr3R 29670885 29670909 8 70 2.5 3.5 3.0 2.0 97 chr3R 29670812 exon ppk30 + chr3R 29670860 exon ppk30 + chr3R 29670909 3` UTR ppk30 + chr3R_8_29670001 chr3R_29670001 RAL-88 1388 chr3R 29738263 29738296 chr3R 29739730 29739763 hobo 11 1467 3.0 2.5 2.8 2.9 1500 chr3R 29738263 intergenic CG1969 +,CG7598 + chr3R 29739013 intron CG1969 + chr3R 29739763 5` UTR CG1969 + chr3R_11_29735001 chr3R_29735001 RAL-88 1389 chr3R 29758951 29758969 chr3R 29759026 29759047 4 77 1.0 4.0 2.5 1.1 96 chr3R 29758951 3` UTR CR44953 - chr3R 29758999 3` UTR CR44953 - chr3R 29759047 intergenic CR44953 - chr3R_4_29755001 chr3R_29755001 RAL-88 1390 chr3R 29760371 29760390 chr3R 29761572 29761586 pogo 6 1200 0.5 0.0 0.2 5.0 1215 chr3R 29760371 intergenic not near genes chr3R 29760978 intergenic not near genes chr3R 29761586 intergenic not near genes chr3R_6_29760001 chr3R_29760001 RAL-88 1391 chr3R 29882020 29882053 chr3R 29891177 29891209 roo 7 9157 3.0 5.0 4.0 1.4 9189 chr3R 29882020 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_7_29885001 chr3R_29885001 RAL-88 1392 chr3R 29923642 29923670 chr3R 29925247 29925275 5 1605 8.5 8.0 8.2 0.5 1633 chr3R 29923642 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924458 exon Jon99Cii - chr3R 29925275 3` UTR Jon99Ci - chr3R_5_29920001 chr3R_29920001 RAL-88 1393 chr3R 29950585 29950594 chr3R 29950654 29950670 5 75 3.5 2.5 3.0 1.2 85 chr3R 29950585 intergenic TkR99D - chr3R 29950628 intergenic TkR99D - chr3R 29950670 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-88 1394 chr3R 29963489 29963508 chr3R 29963591 29963610 4 101 2.5 7.5 5.0 0.7 121 chr3R 29963489 intron TkR99D - chr3R 29963550 intron TkR99D - chr3R 29963610 intron TkR99D - chr3R_4_29960001 chr3R_29960001 RAL-88 1395 chr3R 30084853 30084882 chr3R 30086319 30086349 hobo 6 1467 2.5 4.0 3.2 1.4 1496 chr3R 30084853 intron sima + chr3R 30085601 intron sima + chr3R 30086349 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-88 1396 chr3R 30156867 30156899 chr3R 30156946 30156978 11 78 1.5 3.0 2.2 3.4 111 chr3R 30156867 intron CG11498 - chr3R 30156922 intron CG11498 - chr3R 30156978 intron CG11498 - chr3R_11_30155001 chr3R_30155001 RAL-88 1397 chr3R 30175697 30175713 chr3R 30175783 30175799 4 86 0.5 1.0 0.8 2.2 102 chr3R 30175697 intergenic CG1983 - chr3R 30175748 intergenic CG1983 - chr3R 30175799 3` UTR CG1983 - chr3R_4_30175001 chr3R_30175001 RAL-88 1398 chr3R 30210662 30210673 chr3R 30210740 30210753 5 79 0.0 5.0 2.5 1.4 91 chr3R 30210662 intergenic CecA1 +,Anp + chr3R 30210708 intergenic CecA1 +,Anp + chr3R 30210753 intergenic CecA1 +,Anp + chr3R_5_30210001 chr3R_30210001 RAL-88 1399 chr3R 30246326 30246336 chr3R 30246405 30246415 4 78 0.0 4.0 2.0 1.3 89 chr3R 30246326 intron CG9733 - chr3R 30246370 intron CG9733 - chr3R 30246415 intron CG9733 - chr3R_4_30245001 chr3R_30245001 RAL-88 1400 chr3R 30264472 30264505 chr3R 30264658 30264690 8 186 2.0 1.0 1.5 3.2 218 chr3R 30264472 intergenic not near genes chr3R 30264581 intergenic not near genes chr3R 30264690 intergenic not near genes chr3R_8_30260001 chr3R_30260001 RAL-88 1401 chr3R 30269642 30269666 chr3R 30269725 30269744 7 82 0.0 0.5 0.2 5.8 102 chr3R 30269642 intergenic not near genes chr3R 30269693 intergenic not near genes chr3R 30269744 intergenic not near genes chr3R_7_30265001 chr3R_30265001 RAL-88 1402 chr3R 30317326 30317343 chr3R 30324918 30324935 roo 5 7592 1.0 3.0 2.0 1.7 7609 chr3R 30317326 intron hdc + chr3R 30321130 intron hdc + chr3R 30324935 intron hdc + chr3R_5_30320001 chr3R_30320001 RAL-88 1403 chr3R 30396219 30396246 chr3R 30404485 30404512 roo 6 8266 1.5 3.5 2.5 1.7 8293 chr3R 30396219 intergenic not near genes chr3R 30400366 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_6_30400001 chr3R_30400001 RAL-88 1404 chr3R 30456401 30456420 chr3R 30456481 30456500 6 80 0.5 1.5 1.0 3.0 99 chr3R 30456401 intergenic CG2224 - chr3R 30456450 3` UTR CG2224 - chr3R 30456500 3` UTR CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-88 1405 chr3R 30458014 30458047 chr3R 30458094 30458127 6 80 2.0 0.5 1.2 2.7 113 chr3R 30458014 intron CG2224 - chr3R 30458070 intron CG2224 - chr3R 30458127 intron CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-88 1406 chr3R 30480474 30480511 chr3R 30482940 30482979 jockey 7 2466 4.0 3.0 3.5 1.6 2505 chr3R 30480474 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_7_30480001 chr3R_30480001 RAL-88 1407 chr3R 30485043 30485070 chr3R 30485119 30485142 8 76 2.5 3.0 2.8 2.1 99 chr3R 30485043 intron PH4alphaEFB + chr3R 30485092 intron PH4alphaEFB + chr3R 30485142 intron PH4alphaEFB + chr3R_8_30485001 chr3R_30485001 RAL-88 1408 chr3R 30627608 30627632 chr3R 30627682 30627702 4 74 4.0 5.5 4.8 0.7 94 chr3R 30627608 exon CG2267 - chr3R 30627655 exon CG2267 - chr3R 30627702 exon CG2267 - chr3R_4_30625001 chr3R_30625001 RAL-88 1409 chr3R 30679519 30679552 chr3R 30686987 30687021 blood 12 7469 2.0 3.5 2.8 3.2 7502 chr3R 30679519 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_12_30680001 chr3R_30680001 RAL-88 1410 chr3R 30778731 30778752 chr3R 30778826 30778839 5 93 3.5 2.5 3.0 1.2 108 chr3R 30778731 intron zfh1 + chr3R 30778785 intron zfh1 + chr3R 30778839 intron zfh1 + chr3R_5_30775001 chr3R_30775001 RAL-88 1411 chr3R 30818810 30818838 chr3R 30820374 30820398 1360 9 1563 1.0 2.5 1.8 3.2 1588 chr3R 30818810 intron cindr + chr3R 30819604 intron cindr + chr3R 30820398 intron cindr + chr3R_9_30815001 chr3R_30815001 RAL-88 1412 chr3R 30900519 30900551 chr3R 30900599 30900631 4 80 5.5 2.5 4.0 0.8 112 chr3R 30900519 exon Cyp4c3 + chr3R 30900575 3` UTR Cyp4c3 + chr3R 30900631 3` UTR Cyp4c3 + chr3R_4_30900001 chr3R_30900001 RAL-88 1413 chr3R 30954088 30954113 chr3R 30954358 30954383 10 270 1.0 5.5 3.2 2.4 295 chr3R 30954088 intergenic not near genes chr3R 30954236 intergenic not near genes chr3R 30954383 intergenic not near genes chr3R_10_30950001 chr3R_30950001 RAL-88 1414 chr3R 30973134 30973162 chr3R 30973295 30973323 9 161 3.5 3.0 3.2 2.1 189 chr3R 30973134 intron 5-HT7 - chr3R 30973228 intron 5-HT7 - chr3R 30973323 intron 5-HT7 - chr3R_9_30970001 chr3R_30970001 RAL-88 1415 chr3R 31074231 31074252 chr3R 31081829 31081844 springer 6 7597 5.0 0.0 2.5 1.7 7613 chr3R 31074231 intron Sox100B + chr3R 31078038 intron Sox100B + chr3R 31081844 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-88 1416 chr3R 31279373 31279403 chr3R 31285564 31285590 diver 5 6179 4.5 1.0 2.8 1.3 6217 chr3R 31279373 intergenic not near genes chr3R 31282482 intergenic not near genes chr3R 31285590 intergenic not near genes chr3R_5_31280001 chr3R_31280001 RAL-88 1417 chr3R 31321571 31321598 chr3R 31322240 31322267 7 668 2.0 2.5 2.2 2.2 696 chr3R 31321571 intron CG34347 + chr3R 31321919 intron CG34347 + chr3R 31322267 intron CG34347 + chr3R_7_31320001 chr3R_31320001 RAL-88 1418 chr3R 31346717 31346748 chr3R 31346794 31346827 6 78 3.0 2.0 2.5 1.7 110 chr3R 31346717 intron CG34347 + chr3R 31346772 intron CG34347 + chr3R 31346827 intron CG34347 + chr3R_6_31345001 chr3R_31345001 RAL-88 1419 chr3R 31413087 31413121 chr3R 31418287 31418321 copia 18 5200 2.5 0.0 1.2 8.2 5234 chr3R 31413087 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418321 intron Gprk2 + chr3R_18_31415001 chr3R_31415001 RAL-88 1420 chr3R 31538578 31538604 chr3R 31538888 31538915 6 311 3.0 5.0 4.0 1.2 337 chr3R 31538578 intergenic not near genes chr3R 31538746 intergenic not near genes chr3R 31538915 intergenic not near genes chr3R_6_31535001 chr3R_31535001 RAL-88 1421 chr3R 31558951 31558967 chr3R 31559017 31559045 7 69 3.0 3.5 3.2 1.7 94 chr3R 31558951 intron nyo + chr3R 31558998 intron nyo + chr3R 31559045 intron nyo + chr3R_7_31555001 chr3R_31555001 RAL-88 1422 chr3R 31599781 31599808 chr3R 31599866 31599891 9 78 3.5 3.0 3.2 2.1 110 chr3R 31599781 intron CycG - chr3R 31599836 intron CycG - chr3R 31599891 intron CycG - chr3R_9_31595001 chr3R_31595001 RAL-88 1423 chr3R 31691531 31691563 chr3R 31696297 31696304 Doc 9 4760 0.5 7.0 3.8 1.9 4773 chr3R 31691531 intergenic not near genes chr3R 31693918 intergenic not near genes chr3R 31696304 intergenic not near genes chr3R_9_31690001 chr3R_31690001 RAL-88 1424 chr3R 31858196 31858205 chr3R 31858299 31858307 6 103 0.0 4.0 2.0 2.0 111 chr3R 31858196 intron heph - chr3R 31858252 intron heph - chr3R 31858307 intron heph - chr3R_6_31855001 chr3R_31855001 RAL-88 1425 chr3R 31929832 31929852 chr3R 31929959 31929984 7 131 0.5 4.0 2.2 2.2 152 chr3R 31929832 intron heph - chr3R 31929908 intron heph - chr3R 31929984 intron heph - chr3R_7_31925001 chr3R_31925001 RAL-88 1426 chr3R 31930877 31930889 chr3R 31930978 31930987 4 100 0.0 0.0 0.0 4.0 110 chr3R 31930877 intron heph - chr3R 31930932 intron heph - chr3R 31930987 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-88 1427 chr3R 31931194 31931214 chr3R 31931277 31931297 5 83 2.0 1.5 1.8 1.8 103 chr3R 31931194 intron heph - chr3R 31931246 intron heph - chr3R 31931297 intron heph - chr3R_5_31930001 chr3R_31930001 RAL-88 1428 chr3R 31957958 31957978 chr3R 31958045 31958065 5 87 1.0 1.5 1.2 2.3 107 chr3R 31957958 intron heph - chr3R 31958012 intron heph - chr3R 31958065 intron heph - chr3R_5_31955001 chr3R_31955001 RAL-88 1429 chr3R 31961790 31961818 chr3R 31961873 31961901 6 83 3.0 2.0 2.5 1.7 111 chr3R 31961790 intron heph - chr3R 31961846 intron heph - chr3R 31961901 intron heph - chr3R_6_31960001 chr3R_31960001 RAL-88 1430 chr4 959633 959653 chr4 959812 959832 5 179 1.0 2.5 1.8 1.8 199 chr4 959633 intergenic CR44030 +,CR45201 - chr4 959732 5` UTR CR44030 + chr4 959832 5` UTR CR44030 + chr4_5_955001 chr4_955001 RAL-88 1431 chr4 1032499 1032524 chr4 1032607 1032631 4 108 0.0 0.0 0.0 4.0 132 chr4 1032499 intron ATPsyn-beta + chr4 1032565 intron ATPsyn-beta + chr4 1032631 intron ATPsyn-beta + chr4_4_1030001 chr4_1030001 RAL-88 1432 chrX 272949 272975 chrX 273031 273057 8 82 3.0 0.5 1.8 2.9 108 chrX 272949 intron ewg - chrX 273003 intron ewg - chrX 273057 intron ewg - chrX_8_270001 chrX_270001 RAL-88 1433 chrX 367037 367065 chrX 367134 367158 6 96 1.5 1.0 1.2 2.7 121 chrX 367037 intron,5` UTR CG32816 -,yar + chrX 367098 intron CG32816 - chrX 367158 intron CG32816 - chrX_6_365001 chrX_365001 RAL-88 1434 chrX 428416 428440 chrX 434601 434625 3S18 4 6185 1.5 1.0 1.2 1.8 6209 chrX 428416 intron CG32816 - chrX 431520 intron CG32816 - chrX 434625 intron CG32816 - chrX_4_430001 chrX_430001 RAL-88 1435 chrX 440999 441025 chrX 441077 441103 10 78 2.0 5.5 3.8 2.1 104 chrX 440999 intron CG32816 - chrX 441051 intron CG32816 - chrX 441103 intron CG32816 - chrX_10_440001 chrX_440001 RAL-88 1436 chrX 443498 443514 chrX 443580 443596 8 82 3.5 3.0 3.2 1.9 98 chrX 443498 intron CG32816 - chrX 443547 intron CG32816 - chrX 443596 intron CG32816 - chrX_8_440001 chrX_440001 RAL-88 1437 chrX 450365 450391 chrX 450443 450469 4 78 0.5 2.0 1.2 1.8 104 chrX 450365 intron CG32816 - chrX 450417 intron CG32816 - chrX 450469 intron CG32816 - chrX_4_450001 chrX_450001 RAL-88 1438 chrX 602816 602848 chrX 602916 602948 14 99 3.0 2.0 2.5 4.0 132 chrX 602816 intron CG13366 - chrX 602882 intron CG13366 - chrX 602948 intron CG13366 - chrX_14_600001 chrX_600001 RAL-88 1439 chrX 677432 677445 chrX 677520 677548 5 101 2.5 4.5 3.5 1.1 116 chrX 677432 intergenic not near genes chrX 677490 intergenic not near genes chrX 677548 intergenic not near genes chrX_5_675001 chrX_675001 RAL-88 1440 chrX 802287 802318 chrX 802364 802368 12 73 3.0 2.0 2.5 3.4 81 chrX 802287 exon CG13359 - chrX 802328 exon CG13359 - chrX 802368 exon CG13359 - chrX_12_800001 chrX_800001 RAL-88 1441 chrX 827607 827635 chrX 835399 835427 roo 5 7792 2.0 3.0 2.5 1.4 7820 chrX 827607 intron CG43867 - chrX 831517 intron CG43867 - chrX 835427 intron CG43867 - chrX_5_830001 chrX_830001 RAL-88 1442 chrX 906714 906733 chrX 908503 908522 S-element 9 1788 2.0 2.5 2.2 2.8 1808 chrX 906714 intron CG43867 - chrX 907618 intron CG43867 - chrX 908522 intron CG43867 - chrX_9_905001 chrX_905001 RAL-88 1443 chrX 1051069 1051082 chrX 1051147 1051160 6 78 6.5 2.0 4.2 1.2 91 chrX 1051069 intron CR44779 + chrX 1051114 intron CR44779 + chrX 1051160 intron CR44779 + chrX_6_1050001 chrX_1050001 RAL-88 1444 chrX 1053117 1053123 chrX 16983076 16983076 4 15929958 8.5 6.5 7.5 0.5 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-88 1445 chrX 1954887 1954918 chrX 1962825 1962831 Stalker2 6 7926 3.5 1.5 2.5 1.7 7944 chrX 1954887 intron Hr4 + chrX 1958859 intron Hr4 + chrX 1962831 intron Hr4 + chrX_6_1955001 chrX_1955001 RAL-88 1446 chrX 2146677 2146687 chrX 2146768 2146776 6 91 2.0 2.5 2.2 1.9 99 chrX 2146677 intron Pgd + chrX 2146726 intron Pgd + chrX 2146776 intron Pgd + chrX_6_2145001 chrX_2145001 RAL-88 1447 chrX 2349218 2349249 chrX 2349313 2349343 13 94 1.0 2.5 1.8 4.6 125 chrX 2349218 exon ptr - chrX 2349280 intron ptr - chrX 2349343 exon ptr - chrX_13_2345001 chrX_2345001 RAL-88 1448 chrX 2397923 2397936 chrX 2398017 2398030 7 94 0.5 3.0 1.8 2.5 107 chrX 2397923 intergenic not near genes chrX 2397976 intergenic not near genes chrX 2398030 intergenic not near genes chrX_7_2395001 chrX_2395001 RAL-88 1449 chrX 2399847 2399867 chrX 2408199 2408215 roo 6 8349 2.0 1.0 1.5 2.4 8368 chrX 2399847 intergenic not near genes chrX 2404031 intergenic not near genes chrX 2408215 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-88 1450 chrX 2568202 2568223 chrX 2568448 2568470 7 247 4.5 3.5 4.0 1.4 268 chrX 2568202 intron Pdfr + chrX 2568336 intron Pdfr + chrX 2568470 intron Pdfr + chrX_7_2565001 chrX_2565001 RAL-88 1451 chrX 2578817 2578842 chrX 2578909 2578934 5 92 3.5 1.0 2.2 1.6 117 chrX 2578817 intergenic Pdfr +,Vha36-3 - chrX 2578876 intergenic Vha36-3 -,Pdfr + chrX 2578934 intergenic Vha36-3 -,Pdfr + chrX_5_2575001 chrX_2575001 RAL-88 1452 chrX 2844896 2844933 chrX 2852306 2852343 mdg1 9 7409 0.5 1.5 1.0 4.5 7447 chrX 2844896 intron kirre + chrX 2848620 intron kirre + chrX 2852343 intron kirre + chrX_9_2845001 chrX_2845001 RAL-88 1453 chrX 2888113 2888138 chrX 2888191 2888216 6 78 3.0 2.0 2.5 1.7 103 chrX 2888113 intron kirre + chrX 2888164 intron kirre + chrX 2888216 intron kirre + chrX_6_2885001 chrX_2885001 RAL-88 1454 chrX 2912172 2912172 chrX 16983076 16983077 4 14070905 15.5 6.5 11.0 0.3 14070905 chrX 2912172 intron kirre + chrX 9947624 intergenic not near genes chrX 16983077 intron CG45002 - chrX_4_9945001 chrX_9945001 RAL-88 1455 chrX 2932230 2932245 chrX 2932313 2932328 7 83 2.5 1.5 2.0 2.3 98 chrX 2932230 intron,exon kirre +,CG32793 + chrX 2932279 intron,exon kirre +,CG32793 + chrX 2932328 intron,exon kirre +,CG32793 + chrX_7_2930001 chrX_2930001 RAL-88 1456 chrX 2983280 2983294 chrX 2983617 2983631 4 337 1.0 2.0 1.5 1.6 351 chrX 2983280 intron kirre + chrX 2983456 intron kirre + chrX 2983631 intron kirre + chrX_4_2980001 chrX_2980001 RAL-88 1457 chrX 3058036 3058044 chrX 3058277 3058285 pogo 4 241 2.0 2.5 2.2 1.2 249 chrX 3058036 intron kirre + chrX 3058160 intron kirre + chrX 3058285 intron kirre + chrX_4_3055001 chrX_3055001 RAL-88 1458 chrX 3107758 3107775 chrX 3107847 3107863 7 89 1.0 0.5 0.8 3.9 105 chrX 3107758 intron kirre + chrX 3107810 intron kirre + chrX 3107863 intron kirre + chrX_7_3105001 chrX_3105001 RAL-88 1459 chrX 3275526 3275560 chrX 3275612 3275647 8 87 2.5 1.5 2.0 2.7 121 chrX 3275526 intron dnc + chrX 3275586 intron dnc + chrX 3275647 intron dnc + chrX_8_3275001 chrX_3275001 RAL-88 1460 chrX 3306352 3306365 chrX 3306434 3306446 4 82 2.0 0.0 1.0 2.0 94 chrX 3306352 intron dnc + chrX 3306399 intron dnc + chrX 3306446 intron dnc + chrX_4_3305001 chrX_3305001 RAL-88 1461 chrX 3323035 3323056 chrX 3323116 3323137 5 79 1.5 1.5 1.5 2.0 102 chrX 3323035 intron,intron dnc +,CR44886 - chrX 3323086 intron,intron dnc +,CR44886 - chrX 3323137 intron,intron dnc +,CR44886 - chrX_5_3320001 chrX_3320001 RAL-88 1462 chrX 3415018 3415051 chrX 3421203 3421236 3S18 6 6185 2.0 2.5 2.2 1.9 6218 chrX 3415018 intron,intron CR44999 +,CG12535 - chrX 3418127 intron,intron CR44999 +,CG12535 - chrX 3421236 intron,intron CR44999 +,CG12535 - chrX_6_3415001 chrX_3415001 RAL-88 1463 chrX 3493094 3493125 chrX 3502253 3502284 roo 5 9158 1.0 1.0 1.0 2.5 9190 chrX 3493094 intron,intron CR44999 +,Gas8 - chrX 3497689 intron,intron CR44999 +,Gas8 - chrX 3502284 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-88 1464 chrX 3513760 3513790 chrX 3513843 3513872 9 82 1.0 0.5 0.8 5.0 112 chrX 3513760 intron,intron CR44999 +,CG32791 - chrX 3513816 intron,intron CR44999 +,CG32791 - chrX 3513872 intron,intron CR44999 +,CG32791 - chrX_9_3510001 chrX_3510001 RAL-88 1465 chrX 3597556 3597583 chrX 3619724 3619749 roo 8 22168 1.0 4.5 2.8 2.1 22193 chrX 3597556 intron AstA-R1 + chrX 3608652 intron AstA-R1 + chrX 3619749 intron AstA-R1 + chrX_8_3605001 chrX_3605001 RAL-88 1466 chrX 3639473 3639501 chrX 3639551 3639559 7 74 3.5 2.0 2.8 1.8 86 chrX 3639473 intron AstA-R1 + chrX 3639516 intron AstA-R1 + chrX 3639559 intron AstA-R1 + chrX_7_3635001 chrX_3635001 RAL-88 1467 chrX 3842329 3842349 chrX 3842570 3842580 pogo 4 238 2.5 2.0 2.2 1.2 251 chrX 3842329 intron ec + chrX 3842454 intron ec + chrX 3842580 intron ec + chrX_4_3840001 chrX_3840001 RAL-88 1468 chrX 3881271 3881305 chrX 3881410 3881444 7 139 1.5 1.0 1.2 3.2 173 chrX 3881271 intron VhaAC39-1 + chrX 3881358 intron VhaAC39-1 + chrX 3881444 intron VhaAC39-1 + chrX_7_3880001 chrX_3880001 RAL-88 1469 chrX 4047469 4047500 chrX 4047581 4047609 9 110 2.5 2.0 2.2 2.8 140 chrX 4047469 intergenic CR45482 - chrX 4047539 intergenic CR45482 - chrX 4047609 3` UTR CR45482 - chrX_9_4045001 chrX_4045001 RAL-88 1470 chrX 4148805 4148836 chrX 4148897 4148927 12 90 2.5 2.5 2.5 3.4 122 chrX 4148805 intron Fas2 - chrX 4148866 intron Fas2 - chrX 4148927 intron Fas2 - chrX_12_4145001 chrX_4145001 RAL-88 1471 chrX 4157912 4157923 chrX 4164965 4164973 297 7 7051 3.5 1.5 2.5 2.0 7061 chrX 4157912 intron Fas2 - chrX 4161442 intron Fas2 - chrX 4164973 intron Fas2 - chrX_7_4160001 chrX_4160001 RAL-88 1472 chrX 4262764 4262788 chrX 4262863 4262886 10 98 1.0 3.0 2.0 3.3 122 chrX 4262764 intergenic not near genes chrX 4262825 intergenic not near genes chrX 4262886 intergenic not near genes chrX_10_4260001 chrX_4260001 RAL-88 1473 chrX 4276479 4276510 chrX 4276558 4276589 7 78 2.0 3.0 2.5 2.0 110 chrX 4276479 intergenic CG15577 - chrX 4276534 3` UTR CG15577 - chrX 4276589 3` UTR CG15577 - chrX_7_4275001 chrX_4275001 RAL-88 1474 chrX 4296120 4296145 chrX 4296195 4296219 5 75 1.0 3.0 2.0 1.7 99 chrX 4296120 intergenic not near genes chrX 4296170 intergenic not near genes chrX 4296219 intergenic not near genes chrX_5_4295001 chrX_4295001 RAL-88 1475 chrX 4324393 4324410 chrX 4324470 4324487 4 77 1.5 2.0 1.8 1.4 94 chrX 4324393 intron norpA + chrX 4324440 intron norpA + chrX 4324487 intron norpA + chrX_4_4320001 chrX_4320001 RAL-88 1476 chrX 4436459 4436483 chrX 4436535 4436537 4 70 3.0 0.0 1.5 1.6 78 chrX 4436459 intron,intron CR32773 -,bi + chrX 4436498 intron,intron CR32773 -,bi + chrX 4436537 intron,intron CR32773 -,bi + chrX_4_4435001 chrX_4435001 RAL-88 1477 chrX 4660821 4660849 chrX 4660920 4660948 5 99 2.0 0.0 1.0 2.5 127 chrX 4660821 intron CG3009 - chrX 4660884 intron CG3009 - chrX 4660948 intron CG3009 - chrX_5_4660001 chrX_4660001 RAL-88 1478 chrX 4723576 4723585 chrX 4723656 4723665 5 80 2.5 4.5 3.5 1.1 89 chrX 4723576 intron Proc-R + chrX 4723620 intron Proc-R + chrX 4723665 intron Proc-R + chrX_5_4720001 chrX_4720001 RAL-88 1479 chrX 4744800 4744810 chrX 4744885 4744895 4 85 2.5 3.0 2.8 1.1 95 chrX 4744800 intergenic not near genes chrX 4744848 intergenic not near genes chrX 4744895 intergenic not near genes chrX_4_4740001 chrX_4740001 RAL-88 1480 chrX 4827992 4827997 chrX 4835339 4835368 Stalker4 4 7360 2.0 1.5 1.8 1.4 7376 chrX 4827992 intergenic not near genes chrX 4831680 intergenic not near genes chrX 4835368 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-88 1481 chrX 4931350 4931372 chrX 4931444 4931465 4 94 2.0 0.5 1.2 1.8 115 chrX 4931350 intron CG44774 - chrX 4931408 intron CG44774 - chrX 4931465 intron CG44774 - chrX_4_4930001 chrX_4930001 RAL-88 1482 chrX 5134799 5134828 chrX 5134900 5134928 15 101 1.0 1.0 1.0 7.5 129 chrX 5134799 intron,intron CG15465 +,rg + chrX 5134864 intron,intron CG15465 +,rg + chrX 5134928 intron,intron CG15465 +,rg + chrX_15_5130001 chrX_5130001 RAL-88 1483 chrX 5206301 5206331 chrX 5206574 5206601 12 272 0.5 4.5 2.5 3.4 300 chrX 5206301 intron,intron CG15465 +,rg + chrX 5206451 intron,intron CG15465 +,rg + chrX 5206601 intron,intron CG15465 +,rg + chrX_12_5205001 chrX_5205001 RAL-88 1484 chrX 5338707 5338729 chrX 5339960 5339982 jockey 4 1253 2.0 2.0 2.0 1.3 1275 chrX 5338707 intergenic not near genes chrX 5339344 intergenic not near genes chrX 5339982 intergenic SK + chrX_4_5335001 chrX_5335001 RAL-88 1485 chrX 5345398 5345420 chrX 5345508 5345530 4 110 0.0 2.0 1.0 2.0 132 chrX 5345398 intron SK + chrX 5345464 intron SK + chrX 5345530 intron SK + chrX_4_5345001 chrX_5345001 RAL-88 1486 chrX 5786575 5786603 chrX 5786658 5786686 9 82 1.5 1.0 1.2 4.1 111 chrX 5786575 intron CG42699 + chrX 5786630 intron CG42699 + chrX 5786686 intron CG42699 + chrX_9_5785001 chrX_5785001 RAL-88 1487 chrX 5792577 5792744 chrX 5792705 5792798 4 76 3.5 1.0 2.2 1.2 221 chrX 5792577 exon CG12239 + chrX 5792688 exon CG12239 + chrX 5792798 exon CG12239 + chrX_4_5790001 chrX_5790001 RAL-88 1488 chrX 5798864 5798889 chrX 5799024 5799051 5 161 1.0 2.0 1.5 2.0 187 chrX 5798864 intergenic not near genes chrX 5798958 intergenic not near genes chrX 5799051 intergenic not near genes chrX_5_5795001 chrX_5795001 RAL-88 1489 chrX 5884166 5884183 chrX 5884407 5884424 pogo 6 241 3.0 1.5 2.2 1.9 258 chrX 5884166 intron CR45668 - chrX 5884295 intron CR45668 - chrX 5884424 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-88 1490 chrX 5896990 5897007 chrX 5897130 5897148 6 141 2.5 1.0 1.8 2.1 158 chrX 5896990 intron CR45668 - chrX 5897069 intron CR45668 - chrX 5897148 intron CR45668 - chrX_6_5895001 chrX_5895001 RAL-88 1491 chrX 6118706 6118721 chrX 6118786 6118803 6 82 2.5 2.5 2.5 1.7 97 chrX 6118706 intron Ca-alpha1T - chrX 6118754 intron Ca-alpha1T - chrX 6118803 intron Ca-alpha1T - chrX_6_6115001 chrX_6115001 RAL-88 1492 chrX 6171584 6171610 chrX 6179015 6179043 Quasimodo 7 7432 4.0 2.5 3.2 1.7 7459 chrX 6171584 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179043 intron Ca-alpha1T - chrX_7_6175001 chrX_6175001 RAL-88 1493 chrX 6335224 6335243 chrX 6337734 6337748 Tirant 5 2509 0.0 1.0 0.5 3.3 2524 chrX 6335224 intergenic not near genes chrX 6336486 intergenic not near genes chrX 6337748 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-88 1494 chrX 6392870 6392895 chrX 6397635 6397660 Doc 7 4763 2.5 2.0 2.2 2.2 4790 chrX 6392870 intergenic not near genes chrX 6395265 intergenic not near genes chrX 6397660 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-88 1495 chrX 6562819 6562845 chrX 6571300 6571323 Tirant 6 8480 0.0 1.0 0.5 4.0 8504 chrX 6562819 intron CG34417 + chrX 6567071 intron CG34417 + chrX 6571323 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-88 1496 chrX 6758630 6758663 chrX 6758706 6758739 7 76 2.5 1.0 1.8 2.5 109 chrX 6758630 intron,3` UTR CG14438 +,CR43496 - chrX 6758684 intron,3` UTR CG14438 +,CR43496 - chrX 6758739 intron,3` UTR CG14438 +,CR43496 - chrX_7_6755001 chrX_6755001 RAL-88 1497 chrX 6897588 6897696 chrX 6897666 6897806 4 94 2.0 2.0 2.0 1.3 218 chrX 6897588 intergenic not near genes chrX 6897697 intergenic not near genes chrX 6897806 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-88 1498 chrX 7023605 7023629 chrX 7030995 7031017 Tabor 5 7390 3.0 4.0 3.5 1.1 7412 chrX 7023605 intron CG12541 - chrX 7027311 intron CG12541 - chrX 7031017 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-88 1499 chrX 7125246 7125272 chrX 7134405 7134431 roo 5 9159 2.0 3.0 2.5 1.4 9185 chrX 7125246 intergenic not near genes chrX 7129838 intergenic not near genes chrX 7134431 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-88 1500 chrX 7268367 7268400 chrX 7268445 7268477 8 78 1.5 2.0 1.8 2.9 110 chrX 7268367 intron CR44357 - chrX 7268422 intron CR44357 - chrX 7268477 intron CR44357 - chrX_8_7265001 chrX_7265001 RAL-88 1501 chrX 7506410 7506430 chrX 10114574 10114593 7 2608163 9.0 1.0 5.0 1.2 2608183 chrX 7506410 intergenic not near genes chrX 8810502 intergenic not near genes chrX 10114593 intron,3` UTR RhoU +,CR44894 - chrX_7_8810001 chrX_8810001 RAL-88 1502 chrX 7702515 7702519 chrX 7702604 7702611 4 91 0.0 3.0 1.5 1.6 96 chrX 7702515 intron CHES-1-like - chrX 7702563 intron CHES-1-like - chrX 7702611 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-88 1503 chrX 7720559 7720571 chrX 7720638 7720653 5 80 4.0 2.0 3.0 1.2 94 chrX 7720559 intergenic not near genes chrX 7720606 intergenic not near genes chrX 7720653 intergenic not near genes chrX_5_7720001 chrX_7720001 RAL-88 1504 chrX 7784236 7784240 chrX 7784537 7784542 jockey 5 301 3.5 2.5 3.0 1.2 306 chrX 7784236 intergenic not near genes chrX 7784389 intergenic not near genes chrX 7784542 intergenic not near genes chrX_5_7780001 chrX_7780001 RAL-88 1505 chrX 7808281 7808305 chrX 7808359 7808383 11 77 2.5 2.0 2.2 3.4 102 chrX 7808281 intergenic not near genes chrX 7808332 intergenic not near genes chrX 7808383 intergenic not near genes chrX_11_7805001 chrX_7805001 RAL-88 1506 chrX 7845728 7845759 chrX 7847218 7847246 hopper2 10 1490 0.5 3.0 1.8 3.6 1518 chrX 7845728 intergenic not near genes chrX 7846487 intergenic not near genes chrX 7847246 intergenic not near genes chrX_10_7845001 chrX_7845001 RAL-88 1507 chrX 8031430 8031441 chrX 8035739 8035750 Juan 4 4309 3.0 4.0 3.5 0.9 4320 chrX 8031430 intergenic not near genes chrX 8033590 intergenic not near genes chrX 8035750 3` UTR CG2233 - chrX_4_8030001 chrX_8030001 RAL-88 1508 chrX 8085578 8085598 chrX 8085664 8085684 6 85 2.0 1.5 1.8 2.1 106 chrX 8085578 intron,5` UTR CG2256 -,CR45535 + chrX 8085631 intron,5` UTR CG2256 -,CR45535 + chrX 8085684 intron,5` UTR CG2256 -,CR45535 + chrX_6_8085001 chrX_8085001 RAL-88 1509 chrX 8730449 8730465 chrX 8730525 8730541 7 76 0.0 1.5 0.8 3.9 92 chrX 8730449 intergenic not near genes chrX 8730495 intergenic not near genes chrX 8730541 intergenic not near genes chrX_7_8730001 chrX_8730001 RAL-88 1510 chrX 8744292 8744315 chrX 8744444 8744467 8 152 1.0 3.0 2.0 2.7 175 chrX 8744292 intergenic not near genes chrX 8744380 intergenic not near genes chrX 8744467 intergenic not near genes chrX_8_8740001 chrX_8740001 RAL-88 1511 chrX 8922326 8922359 chrX 8922760 8922793 jockey 8 433 3.0 5.0 4.0 1.6 467 chrX 8922326 intron rdgA + chrX 8922560 intron rdgA + chrX 8922793 intron rdgA + chrX_8_8920001 chrX_8920001 RAL-88 1512 chrX 8948760 8948791 chrX 8956270 8956299 roo 4 7510 0.5 0.0 0.2 3.3 7539 chrX 8948760 intron rdgA + chrX 8952530 intron rdgA + chrX 8956299 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-88 1513 chrX 9210851 9210859 chrX 9210927 9210934 4 76 6.5 2.0 4.2 0.8 83 chrX 9210851 5` UTR CG12119 - chrX 9210892 intergenic CG12119 - chrX 9210934 intergenic CG12119 - chrX_4_9210001 chrX_9210001 RAL-88 1514 chrX 9508147 9508167 chrX 9509664 9509685 jockey 4 1518 1.5 5.0 3.2 1.0 1538 chrX 9508147 intron CG32700 - chrX 9508916 intron CG32700 - chrX 9509685 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-88 1515 chrX 9575789 9575822 chrX 9576113 9576144 mdg3 7 320 3.5 1.5 2.5 2.0 355 chrX 9575789 intron,exon CG32699 -,CG42395 - chrX 9575966 intron,intron CG32699 -,CG42395 - chrX 9576144 intron,5` UTR CG32699 -,CG42395 - chrX_7_9575001 chrX_9575001 RAL-88 1516 chrX 9791864 9791894 chrX 9791960 9791991 5 97 1.0 2.5 1.8 1.8 127 chrX 9791864 intron CG32698 + chrX 9791928 intron CG32698 + chrX 9791991 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-88 1517 chrX 10138229 10138245 chrX 10145733 10145749 412 4 7504 1.0 4.5 2.8 1.1 7520 chrX 10138229 intron,intron RhoU +,CR44894 - chrX 10141989 intron,intron RhoU +,CR44894 - chrX 10145749 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-88 1518 chrX 10550343 10550367 chrX 10550421 10550445 4 78 0.5 1.5 1.0 2.0 102 chrX 10550343 intron spri - chrX 10550394 intron spri - chrX 10550445 intron spri - chrX_4_10550001 chrX_10550001 RAL-88 1519 chrX 10550855 10550863 chrX 10552320 10552330 hobo 4 1466 5.5 1.5 3.5 0.9 1475 chrX 10550855 intron spri - chrX 10551592 intron spri - chrX 10552330 intron spri - chrX_4_10550001 chrX_10550001 RAL-88 1520 chrX 10578131 10578155 chrX 10578224 10578248 4 93 2.5 1.0 1.8 1.4 117 chrX 10578131 intron spri - chrX 10578190 intron spri - chrX 10578248 exon spri - chrX_4_10575001 chrX_10575001 RAL-88 1521 chrX 10686048 10686080 chrX 10691185 10691216 roo 7 5137 0.5 1.5 1.0 3.5 5168 chrX 10686048 intron X11Lbeta + chrX 10688632 intron X11Lbeta + chrX 10691216 intron X11Lbeta + chrX_7_10685001 chrX_10685001 RAL-88 1522 chrX 10772682 10772696 chrX 10772764 10772779 Tirant 7 83 2.0 2.5 2.2 2.2 97 chrX 10772682 intron CG15211 + chrX 10772730 intron CG15211 + chrX 10772779 intron CG15211 + chrX_7_10770001 chrX_10770001 RAL-88 1523 chrX 10811868 10811891 chrX 10811960 10811981 9 90 4.0 3.0 3.5 2.0 113 chrX 10811868 intron Imp - chrX 10811924 intron Imp - chrX 10811981 intron Imp - chrX_9_10810001 chrX_10810001 RAL-88 1524 chrX 10933924 10933944 chrX 10934011 10934032 6 88 1.0 2.0 1.5 2.4 108 chrX 10933924 intron Myo10A + chrX 10933978 intron Myo10A + chrX 10934032 intron Myo10A + chrX_6_10930001 chrX_10930001 RAL-88 1525 chrX 11312057 11312086 chrX 11319409 11319415 Stalker2 4 7347 2.0 0.5 1.2 1.8 7358 chrX 11312057 intergenic not near genes chrX 11315736 intergenic not near genes chrX 11319415 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-88 1526 chrX 11633424 11633448 chrX 11640478 11640502 297 4 7054 1.5 3.5 2.5 1.1 7078 chrX 11633424 intron Ptp10D + chrX 11636963 intron Ptp10D + chrX 11640502 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-88 1527 chrX 11719869 11719877 chrX 11719949 11719957 4 80 1.5 1.0 1.2 1.8 88 chrX 11719869 3` UTR prtp + chrX 11719913 intergenic prtp +,Tango10 + chrX 11719957 intergenic prtp +,Tango10 + chrX_4_11715001 chrX_11715001 RAL-88 1528 chrX 11922364 11922370 chrX 11922497 11922503 4 133 4.0 2.5 3.2 1.0 139 chrX 11922364 exon Sclp - chrX 11922434 intron Sclp - chrX 11922503 intron Sclp - chrX_4_11920001 chrX_11920001 RAL-88 1529 chrX 11940118 11940146 chrX 11940197 11940202 5 75 2.5 2.0 2.2 1.6 84 chrX 11940118 intron cac - chrX 11940160 intron cac - chrX 11940202 intron cac - chrX_5_11940001 chrX_11940001 RAL-88 1530 chrX 12043833 12043860 chrX 12043922 12043949 4 89 0.5 1.0 0.8 2.2 116 chrX 12043833 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043891 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043949 5` UTR,5` UTR CR43960 +,Ten-a + chrX_4_12040001 chrX_12040001 RAL-88 1531 chrX 12094036 12094056 chrX 12094128 12094148 5 90 0.5 1.0 0.8 2.8 112 chrX 12094036 intron,intron CR43960 +,Ten-a + chrX 12094092 intron,intron CR43960 +,Ten-a + chrX 12094148 intron,intron CR43960 +,Ten-a + chrX_5_12090001 chrX_12090001 RAL-88 1532 chrX 12168153 12168164 chrX 12173595 12173604 I-element 4 5440 2.0 3.5 2.8 1.1 5451 chrX 12168153 intron Ten-a + chrX 12170878 intron Ten-a + chrX 12173604 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-88 1533 chrX 12176750 12176766 chrX 12176825 12176840 9 75 0.0 5.5 2.8 2.4 90 chrX 12176750 intron,3` UTR Ten-a +,CG1924 - chrX 12176795 intron,3` UTR Ten-a +,CG1924 - chrX 12176840 intron,3` UTR Ten-a +,CG1924 - chrX_9_12175001 chrX_12175001 RAL-88 1534 chrX 12250416 12250432 chrX 12250492 12250513 7 79 1.0 3.0 2.0 2.3 97 chrX 12250416 intron Ten-a + chrX 12250464 intron Ten-a + chrX 12250513 intron Ten-a + chrX_7_12250001 chrX_12250001 RAL-88 1535 chrX 12752293 12752310 chrX 12752380 12752397 4 87 1.5 3.5 2.5 1.1 104 chrX 12752293 5` UTR CR44619 + chrX 12752345 5` UTR CR44619 + chrX 12752397 5` UTR CR44619 + chrX_4_12750001 chrX_12750001 RAL-88 1536 chrX 12823193 12823212 chrX 12823270 12823289 4 77 0.5 0.0 0.2 3.3 96 chrX 12823193 intron Pde9 - chrX 12823241 intron Pde9 - chrX 12823289 intron Pde9 - chrX_4_12820001 chrX_12820001 RAL-88 1537 chrX 12960764 12960793 chrX 12960844 12960874 5 81 2.0 0.0 1.0 2.5 110 chrX 12960764 3` UTR CG32642 + chrX 12960819 intergenic CG32642 + chrX 12960874 intergenic CG32642 + chrX_5_12960001 chrX_12960001 RAL-88 1538 chrX 13146598 13146629 chrX 13146686 13146717 5 88 0.0 0.5 0.2 4.2 119 chrX 13146598 intron CG32645 + chrX 13146658 intron CG32645 + chrX 13146717 intron CG32645 + chrX_5_13145001 chrX_13145001 RAL-88 1539 chrX 13172353 13172382 chrX 13172426 13172458 10 76 1.5 2.5 2.0 3.3 105 chrX 13172353 exon CG34411 - chrX 13172406 intron CG34411 - chrX 13172458 intron CG34411 - chrX_10_13170001 chrX_13170001 RAL-88 1540 chrX 13563418 13563447 chrX 13563498 13563527 5 80 0.5 1.0 0.8 2.8 109 chrX 13563418 intergenic CG32633 +,Tango13 + chrX 13563472 intergenic CG32633 +,Tango13 + chrX 13563527 intergenic CG32633 +,Tango13 + chrX_5_13560001 chrX_13560001 RAL-88 1541 chrX 13821471 13821475 chrX 13821548 13821551 4 76 1.0 4.5 2.8 1.1 80 chrX 13821471 intron Clic - chrX 13821511 intron Clic - chrX 13821551 intron Clic - chrX_4_13820001 chrX_13820001 RAL-88 1542 chrX 13843366 13843404 chrX 13843443 13843478 5 76 3.5 0.5 2.0 1.7 112 chrX 13843366 intron AMPdeam - chrX 13843422 intron AMPdeam - chrX 13843478 intron AMPdeam - chrX_5_13840001 chrX_13840001 RAL-88 1543 chrX 13934287 13934320 chrX 13934370 13934403 6 83 1.0 1.0 1.0 3.0 116 chrX 13934287 intron mamo - chrX 13934345 intron mamo - chrX 13934403 intron mamo - chrX_6_13930001 chrX_13930001 RAL-88 1544 chrX 13937984 13938008 chrX 13941254 13941279 I-element 4 3270 1.5 0.5 1.0 2.0 3295 chrX 13937984 intron mamo - chrX 13939632 intron mamo - chrX 13941279 intron mamo - chrX_4_13935001 chrX_13935001 RAL-88 1545 chrX 13943272 13943300 chrX 13943363 13943390 9 90 0.0 3.5 1.8 3.2 118 chrX 13943272 intron mamo - chrX 13943331 intron mamo - chrX 13943390 intron mamo - chrX_9_13940001 chrX_13940001 RAL-88 1546 chrX 13975874 13975904 chrX 13975951 13975981 4 76 0.0 3.0 1.5 1.6 107 chrX 13975874 intron mamo - chrX 13975928 intron mamo - chrX 13975981 intron mamo - chrX_4_13975001 chrX_13975001 RAL-88 1547 chrX 14087825 14087843 chrX 14088125 14088155 7 309 3.0 1.5 2.2 2.2 330 chrX 14087825 intergenic not near genes chrX 14087990 intergenic not near genes chrX 14088155 intergenic not near genes chrX_7_14085001 chrX_14085001 RAL-88 1548 chrX 14105022 14105056 chrX 14114171 14114182 roo 9 9145 1.5 3.0 2.2 2.8 9160 chrX 14105022 intergenic not near genes chrX 14109602 intergenic not near genes chrX 14114182 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-88 1549 chrX 14254366 14254380 chrX 14254445 14254461 9 81 1.5 2.0 1.8 3.2 95 chrX 14254366 intron mud + chrX 14254414 intron mud + chrX 14254461 intron mud + chrX_9_14250001 chrX_14250001 RAL-88 1550 chrX 14318361 14318382 chrX 14318461 14318482 5 100 1.0 4.5 2.8 1.3 121 chrX 14318361 intergenic not near genes chrX 14318422 intergenic not near genes chrX 14318482 intergenic not near genes chrX_5_14315001 chrX_14315001 RAL-88 1551 chrX 14340275 14340306 chrX 14340376 14340407 7 100 3.5 0.0 1.8 2.5 132 chrX 14340275 intron dpr8 + chrX 14340341 intron dpr8 + chrX 14340407 intron dpr8 + chrX_7_14340001 chrX_14340001 RAL-88 1552 chrX 14484848 14484986 chrX 14484944 14485075 4 91 0.0 0.0 0.0 4.0 227 chrX 14484848 intergenic not near genes chrX 14484962 intergenic not near genes chrX 14485075 intergenic not near genes chrX_4_14480001 chrX_14480001 RAL-88 1553 chrX 14636483 14636489 chrX 14641906 14641930 I-element 5 5437 4.5 1.5 3.0 1.2 5447 chrX 14636483 intron NetA - chrX 14639206 intron NetA - chrX 14641930 intron NetA - chrX_5_14635001 chrX_14635001 RAL-88 1554 chrX 14778028 14778061 chrX 14782825 14782858 Doc 5 4797 1.5 1.5 1.5 2.0 4830 chrX 14778028 intergenic CG5347 + chrX 14780443 intergenic not near genes chrX 14782858 intergenic Ag5r2 - chrX_5_14780001 chrX_14780001 RAL-88 1555 chrX 14818765 14818797 chrX 14823966 14823987 copia 6 5200 2.5 2.5 2.5 1.7 5222 chrX 14818765 intron rut - chrX 14821376 intron rut - chrX 14823987 intron rut - chrX_6_14820001 chrX_14820001 RAL-88 1556 chrX 14883321 14883353 chrX 14883407 14883439 14 83 2.0 1.0 1.5 5.6 118 chrX 14883321 intron Flo2 + chrX 14883380 intron Flo2 + chrX 14883439 intron Flo2 + chrX_14_14880001 chrX_14880001 RAL-88 1557 chrX 14936861 14936887 chrX 14946118 14946144 roo 6 9257 1.0 1.5 1.2 2.7 9283 chrX 14936861 intron pdgy - chrX 14941502 intron pdgy - chrX 14946144 intron pdgy - chrX_6_14940001 chrX_14940001 RAL-88 1558 chrX 14968084 14968089 chrX 14968163 14968167 4 79 0.0 2.5 1.2 1.8 83 chrX 14968084 intron eag + chrX 14968126 intron eag + chrX 14968167 intron eag + chrX_4_14965001 chrX_14965001 RAL-88 1559 chrX 14981705 14981738 chrX 14981784 14981817 5 79 1.0 0.0 0.5 3.3 112 chrX 14981705 intron eag + chrX 14981761 intron eag + chrX 14981817 intron eag + chrX_5_14980001 chrX_14980001 RAL-88 1560 chrX 15110617 15110648 chrX 15110697 15110727 11 77 2.5 2.0 2.2 3.4 110 chrX 15110617 exon Rab3-GEF + chrX 15110672 intron Rab3-GEF + chrX 15110727 intron Rab3-GEF + chrX_11_15110001 chrX_15110001 RAL-88 1561 chrX 15256497 15256531 chrX 15256685 15256719 5 188 1.5 1.0 1.2 2.3 222 chrX 15256497 intergenic not near genes chrX 15256608 intergenic not near genes chrX 15256719 intergenic not near genes chrX_5_15255001 chrX_15255001 RAL-88 1562 chrX 15273714 15273737 chrX 15274869 15274902 1360 5 1157 5.5 2.0 3.8 1.0 1188 chrX 15273714 intergenic not near genes chrX 15274308 intergenic not near genes chrX 15274902 intergenic not near genes chrX_5_15270001 chrX_15270001 RAL-88 1563 chrX 15413053 15413083 chrX 15417351 15417384 Juan 6 4300 2.5 0.0 1.2 2.7 4331 chrX 15413053 intron Cngl - chrX 15415218 intron Cngl - chrX 15417384 intron Cngl - chrX_6_15415001 chrX_15415001 RAL-88 1564 chrX 15435688 15435705 chrX 15436121 15436137 rover 7 433 0.5 6.0 3.2 1.7 449 chrX 15435688 intron Cngl - chrX 15435912 intron Cngl - chrX 15436137 intron Cngl - chrX_7_15435001 chrX_15435001 RAL-88 1565 chrX 15531272 15531301 chrX 15531623 15531652 8 347 3.0 2.0 2.5 2.3 380 chrX 15531272 intron Ac13E - chrX 15531462 intron Ac13E - chrX 15531652 intron Ac13E - chrX_8_15530001 chrX_15530001 RAL-88 1566 chrX 15678048 15678068 chrX 15678119 15678141 10 75 1.0 3.5 2.2 3.1 93 chrX 15678048 intergenic CG12708 + chrX 15678094 intergenic CG12708 + chrX 15678141 intergenic CG12708 + chrX_10_15675001 chrX_15675001 RAL-88 1567 chrX 15954059 15954077 chrX 15954148 15954165 4 89 3.5 1.0 2.2 1.2 106 chrX 15954059 intron mmd - chrX 15954112 intron mmd - chrX 15954165 intron mmd - chrX_4_15950001 chrX_15950001 RAL-88 1568 chrX 16329435 16329443 chrX 16329518 16329520 4 82 0.0 7.5 3.8 0.8 85 chrX 16329435 intron CG9919 - chrX 16329478 intron CG9919 - chrX 16329520 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-88 1569 chrX 16492644 16492677 chrX 16498221 16498254 mdg3 8 5577 0.5 2.5 1.5 3.2 5610 chrX 16492644 intron para - chrX 16495449 intron para - chrX 16498254 intron para - chrX_8_16495001 chrX_16495001 RAL-88 1570 chrX 16650934 16650949 chrX 16651011 16651026 5 77 2.0 0.0 1.0 2.5 92 chrX 16650934 intergenic CG32573 +,CG42512 + chrX 16650980 intergenic CG32573 +,CG42512 + chrX 16651026 intergenic CG32573 +,CG42512 + chrX_5_16650001 chrX_16650001 RAL-88 1571 chrX 16833206 16833221 chrX 16833288 16833306 5 84 5.0 0.0 2.5 1.4 100 chrX 16833206 intron CG13004 - chrX 16833256 intron CG13004 - chrX 16833306 intron CG13004 - chrX_5_16830001 chrX_16830001 RAL-88 1572 chrX 16936005 16936024 chrX 16936423 16936442 jockey 6 418 0.5 0.5 0.5 4.0 437 chrX 16936005 intron CG4928 + chrX 16936224 intron CG4928 + chrX 16936442 intron CG4928 + chrX_6_16935001 chrX_16935001 RAL-88 1573 chrX 16951331 16951355 chrX 16951411 16951434 4 80 1.5 2.5 2.0 1.3 103 chrX 16951331 exon RhoGAP15B + chrX 16951382 exon RhoGAP15B + chrX 16951434 exon RhoGAP15B + chrX_4_16950001 chrX_16950001 RAL-88 1574 chrX 17011971 17011995 chrX 17012053 17012077 8 82 0.5 5.5 3.0 2.0 106 chrX 17011971 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012077 intron CG45002 - chrX_8_17010001 chrX_17010001 RAL-88 1575 chrX 17122639 17122671 chrX 17122730 17122760 8 91 2.0 1.0 1.5 3.2 121 chrX 17122639 intron CG5004 + chrX 17122700 intron CG5004 + chrX 17122760 intron CG5004 + chrX_8_17120001 chrX_17120001 RAL-88 1576 chrX 17178400 17178425 chrX 17178485 17178496 7 84 2.0 0.0 1.0 3.5 96 chrX 17178400 5` UTR baz + chrX 17178448 5` UTR baz + chrX 17178496 5` UTR baz + chrX_7_17175001 chrX_17175001 RAL-88 1577 chrX 17234260 17234286 chrX 17234354 17234383 4 94 1.0 0.0 0.5 2.7 123 chrX 17234260 intron f + chrX 17234322 intron f + chrX 17234383 intron f + chrX_4_17230001 chrX_17230001 RAL-88 1578 chrX 17352596 17352622 chrX 17352695 17352725 5 102 0.0 1.5 0.8 2.8 129 chrX 17352596 intergenic not near genes chrX 17352660 intergenic not near genes chrX 17352725 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-88 1579 chrX 17435776 17435784 chrX 17435852 17435860 4 76 0.0 6.5 3.2 1.0 84 chrX 17435776 intron CG12994 - chrX 17435818 intron CG12994 - chrX 17435860 intron CG12994 - chrX_4_17435001 chrX_17435001 RAL-88 1580 chrX 17545003 17545030 chrX 17545085 17545112 9 81 2.5 1.5 2.0 3.0 109 chrX 17545003 intron CG43658 - chrX 17545058 intron CG43658 - chrX 17545112 intron CG43658 - chrX_9_17545001 chrX_17545001 RAL-88 1581 chrX 17680888 17680924 chrX 17680965 17680984 13 74 0.5 2.0 1.2 5.9 96 chrX 17680888 intron chas - chrX 17680936 intron chas - chrX 17680984 intron chas - chrX_13_17680001 chrX_17680001 RAL-88 1582 chrX 17792949 17792982 chrX 17796247 17796278 flea 5 3297 3.5 4.5 4.0 1.0 3329 chrX 17792949 intron OdsH + chrX 17794614 intron OdsH + chrX 17796278 intron OdsH + chrX_5_17790001 chrX_17790001 RAL-88 1583 chrX 17881480 17881500 chrX 17881679 17881699 9 198 1.5 0.0 0.8 5.0 219 chrX 17881480 intron mnb - chrX 17881590 intron mnb - chrX 17881699 intron mnb - chrX_9_17880001 chrX_17880001 RAL-88 1584 chrX 17911854 17911869 chrX 17911941 17911957 4 88 1.0 0.5 0.8 2.2 103 chrX 17911854 intron CG6847 + chrX 17911906 intron CG6847 + chrX 17911957 intron CG6847 + chrX_4_17910001 chrX_17910001 RAL-88 1585 chrX 18194066 18194091 chrX 18194601 18194626 BS 6 535 2.5 1.5 2.0 2.0 560 chrX 18194066 intron Frq2 + chrX 18194346 intron Frq2 + chrX 18194626 intron Frq2 + chrX_6_18190001 chrX_18190001 RAL-88 1586 chrX 18281548 18281583 chrX 18281630 18281664 8 80 2.5 2.0 2.2 2.5 116 chrX 18281548 intron upd3 + chrX 18281606 intron upd3 + chrX 18281664 intron upd3 + chrX_8_18280001 chrX_18280001 RAL-88 1587 chrX 18429492 18429527 chrX 18434803 18434838 Transpac 8 5311 1.0 2.5 1.8 2.9 5346 chrX 18429492 intergenic not near genes chrX 18432165 intergenic not near genes chrX 18434838 intergenic not near genes chrX_8_18430001 chrX_18430001 RAL-88 1588 chrX 18555395 18555406 chrX 18556917 18556928 transib2 4 1522 0.0 1.5 0.8 2.2 1533 chrX 18555395 intron Bx + chrX 18556162 intron Bx + chrX 18556928 intron Bx + chrX_4_18555001 chrX_18555001 RAL-88 1589 chrX 18645015 18645046 chrX 18645113 18645144 4 98 1.5 2.0 1.8 1.4 129 chrX 18645015 intron Rip11 - chrX 18645080 intron Rip11 - chrX 18645144 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-88 1590 chrX 18896520 18896541 chrX 18896631 18896652 5 110 0.0 2.5 1.2 2.3 132 chrX 18896520 3` UTR CG7349 + chrX 18896586 intergenic CG7349 + chrX 18896652 intergenic CG7349 + chrX_5_18895001 chrX_18895001 RAL-88 1591 chrX 19004729 19004762 chrX 19004824 19004857 6 95 0.5 3.0 1.8 2.1 128 chrX 19004729 intron CG43759 + chrX 19004793 intron CG43759 + chrX 19004857 intron CG43759 + chrX_6_19000001 chrX_19000001 RAL-88 1592 chrX 19048237 19048255 chrX 19048324 19048344 6 89 1.0 4.0 2.5 1.7 107 chrX 19048237 intergenic not near genes chrX 19048290 intergenic not near genes chrX 19048344 intergenic not near genes chrX_6_19045001 chrX_19045001 RAL-88 1593 chrX 19060415 19060438 chrX 19065199 19065222 Doc 5 4784 1.0 3.5 2.2 1.6 4807 chrX 19060415 intron CG14190 + chrX 19062818 intron CG14190 + chrX 19065222 intron CG14190 + chrX_5_19060001 chrX_19060001 RAL-88 1594 chrX 19099663 19099685 chrX 19099746 19099767 6 83 1.0 3.0 2.0 2.0 104 chrX 19099663 intergenic not near genes chrX 19099715 intergenic not near genes chrX 19099767 intergenic not near genes chrX_6_19095001 chrX_19095001 RAL-88 1595 chrX 19119698 19119714 chrX 19119784 19119800 4 86 1.0 1.0 1.0 2.0 102 chrX 19119698 intergenic not near genes chrX 19119749 intergenic not near genes chrX 19119800 intergenic not near genes chrX_4_19115001 chrX_19115001 RAL-88 1596 chrX 19124435 19124451 chrX 19124522 19124539 4 88 2.0 0.0 1.0 2.0 104 chrX 19124435 intergenic CG15882 - chrX 19124487 intergenic CG15882 - chrX 19124539 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-88 1597 chrX 19125693 19125720 chrX 19125822 19125849 5 128 0.5 3.5 2.0 1.7 156 chrX 19125693 intron tgy - chrX 19125771 intron tgy - chrX 19125849 intron tgy - chrX_5_19125001 chrX_19125001 RAL-88 1598 chrX 19131969 19132001 chrX 19132052 19132084 7 83 2.0 5.0 3.5 1.6 115 chrX 19131969 intergenic not near genes chrX 19132026 intergenic not near genes chrX 19132084 intergenic not near genes chrX_7_19130001 chrX_19130001 RAL-88 1599 chrX 19136557 19136582 chrX 19143476 19143494 412 4 6917 0.5 2.0 1.2 1.8 6937 chrX 19136557 intergenic not near genes chrX 19140026 intergenic not near genes chrX 19143494 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-88 1600 chrX 19170594 19170602 chrX 19170671 19170679 5 76 6.5 7.0 6.8 0.6 85 chrX 19170594 5` UTR Inx5 - chrX 19170636 5` UTR Inx5 - chrX 19170679 5` UTR Inx5 - chrX_5_19170001 chrX_19170001 RAL-88 1601 chrX 19356986 19357017 chrX 19358427 19358458 NOF 4 1441 2.5 0.5 1.5 1.6 1472 chrX 19356986 intron kek5 + chrX 19357722 intron kek5 + chrX 19358458 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-88 1602 chrX 19472137 19472154 chrX 19472706 19472724 jockey 8 569 2.0 4.0 3.0 2.0 587 chrX 19472137 intergenic kek5 + chrX 19472430 intergenic not near genes chrX 19472724 intergenic not near genes chrX_8_19470001 chrX_19470001 RAL-88 1603 chrX 19593946 19593975 chrX 19594031 19594060 7 85 4.0 3.5 3.8 1.5 114 chrX 19593946 exon CG14205 + chrX 19594003 intron CG14205 + chrX 19594060 intron CG14205 + chrX_7_19590001 chrX_19590001 RAL-88 1604 chrX 19662033 19662052 chrX 19662256 19662275 6 223 1.5 1.0 1.2 2.7 242 chrX 19662033 intron CG14223 - chrX 19662154 intron CG14223 - chrX 19662275 intron CG14223 - chrX_6_19660001 chrX_19660001 RAL-88 1605 chrX 19710073 19710099 chrX 19711858 19711885 S-element 8 1785 1.5 3.0 2.2 2.5 1812 chrX 19710073 intron meso18E - chrX 19710979 intron meso18E - chrX 19711885 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-88 1606 chrX 19849813 19849842 chrX 19850131 19850161 8 318 1.5 1.5 1.5 3.2 348 chrX 19849813 intron pico - chrX 19849987 intron pico - chrX 19850161 intron pico - chrX_8_19845001 chrX_19845001 RAL-88 1607 chrX 19881456 19881481 chrX 19881537 19881545 4 76 1.5 0.0 0.8 2.2 89 chrX 19881456 intron Hers + chrX 19881500 intron Hers + chrX 19881545 intron Hers + chrX_4_19880001 chrX_19880001 RAL-88 1608 chrX 19983865 19983900 chrX 19983944 19983980 6 80 0.5 0.0 0.2 5.0 115 chrX 19983865 intergenic not near genes chrX 19983922 intergenic not near genes chrX 19983980 intergenic not near genes chrX_6_19980001 chrX_19980001 RAL-88 1609 chrX 20105200 20105227 chrX 20105307 20105330 5 104 24.0 21.5 22.8 0.2 130 chrX 20105200 intergenic not near genes chrX 20105265 intergenic not near genes chrX 20105330 intergenic not near genes chrX_5_20105001 chrX_20105001 RAL-88 1610 chrX 20312891 20312911 chrX 20312967 20312989 7 78 3.0 2.0 2.5 2.0 98 chrX 20312891 intron CG1504 - chrX 20312940 intron CG1504 - chrX 20312989 intron CG1504 - chrX_7_20310001 chrX_20310001 RAL-88 1611 chrX 20359138 20359170 chrX 20359215 20359248 6 77 1.0 2.5 1.8 2.1 110 chrX 20359138 intergenic not near genes chrX 20359193 intergenic not near genes chrX 20359248 intergenic not near genes chrX_6_20355001 chrX_20355001 RAL-88 1612 chrX 20369319 20369330 chrX 20369403 20369413 4 84 1.0 1.5 1.2 1.8 94 chrX 20369319 intergenic not near genes chrX 20369366 intergenic not near genes chrX 20369413 intergenic not near genes chrX_4_20365001 chrX_20365001 RAL-88 1613 chrX 20377326 20377347 chrX 20378793 20378814 hobo 11 1465 5.5 6.0 5.8 1.6 1488 chrX 20377326 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378814 intergenic not near genes chrX_11_20375001 chrX_20375001 RAL-88 1614 chrX 20531764 20531798 chrX 20531861 20531894 4 97 1.5 1.0 1.2 1.8 130 chrX 20531764 intergenic not near genes chrX 20531829 intergenic not near genes chrX 20531894 intergenic not near genes chrX_4_20530001 chrX_20530001 RAL-88 1615 chrX 20570776 20570788 chrX 20570861 20570873 4 84 1.0 1.0 1.0 2.0 97 chrX 20570776 intergenic not near genes chrX 20570824 intergenic not near genes chrX 20570873 intergenic not near genes chrX_4_20570001 chrX_20570001 RAL-88 1616 chrX 20710413 20710432 chrX 20710489 20710509 6 77 0.0 1.0 0.5 4.0 96 chrX 20710413 intergenic not near genes chrX 20710461 intergenic not near genes chrX 20710509 intergenic not near genes chrX_6_20710001 chrX_20710001 RAL-88 1617 chrX 20915045 20915073 chrX 20915216 20915244 6 171 4.0 1.0 2.5 1.7 199 chrX 20915045 intron shakB - chrX 20915144 intron shakB - chrX 20915244 intron shakB - chrX_6_20915001 chrX_20915001 RAL-88 1618 chrX 20940719 20940752 chrX 20942188 20942208 hobo 5 1465 2.5 1.5 2.0 1.7 1489 chrX 20940719 intergenic not near genes chrX 20941464 intergenic not near genes chrX 20942208 intergenic not near genes chrX_5_20940001 chrX_20940001 RAL-88 1619 chrX 20948481 20948497 chrX 20948556 20948575 4 77 2.5 1.0 1.8 1.4 94 chrX 20948481 intergenic not near genes chrX 20948528 intergenic not near genes chrX 20948575 intergenic not near genes chrX_4_20945001 chrX_20945001 RAL-88 1620 chrX 20971853 20971878 chrX 20972443 20972455 6 590 2.5 0.0 1.2 2.7 602 chrX 20971853 intergenic not near genes chrX 20972154 intergenic not near genes chrX 20972455 intergenic not near genes chrX_6_20970001 chrX_20970001 RAL-88 1621 chrX 21008659 21008682 chrX 21008745 21008769 4 86 0.0 0.0 0.0 4.0 110 chrX 21008659 intergenic not near genes chrX 21008714 intergenic not near genes chrX 21008769 intergenic not near genes chrX_4_21005001 chrX_21005001 RAL-88 1622 chrX 21086130 21086158 chrX 21087159 21087187 jockey 5 1029 1.5 1.5 1.5 2.0 1057 chrX 21086130 intergenic not near genes chrX 21086658 intergenic not near genes chrX 21087187 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-88 1623 chrX 21088042 21088075 chrX 21088174 21088207 5 129 2.0 1.5 1.8 1.8 165 chrX 21088042 intergenic not near genes chrX 21088124 intergenic not near genes chrX 21088207 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-88 1624 chrX 21253299 21253308 chrX 21253363 21253385 5 72 4.5 7.0 5.8 0.7 86 chrX 21253299 intron CG32521 - chrX 21253342 intron CG32521 - chrX 21253385 intron CG32521 - chrX_5_21250001 chrX_21250001 RAL-88 1625 chrX 21419713 21419735 chrX 21419802 21419824 5 88 1.0 4.5 2.8 1.3 111 chrX 21419713 intergenic not near genes chrX 21419768 intergenic not near genes chrX 21419824 intergenic not near genes chrX_5_21415001 chrX_21415001 RAL-88 1626 chrX 21458697 21458722 chrX 21464133 21464158 Ivk 6 5436 1.0 1.5 1.2 2.7 5461 chrX 21458697 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464158 intergenic not near genes chrX_6_21460001 chrX_21460001 RAL-88 1627 chrX 21474411 21474428 chrX 21474775 21474794 1731 7 365 0.5 1.5 1.0 3.5 383 chrX 21474411 intergenic not near genes chrX 21474602 intergenic not near genes chrX 21474794 intergenic not near genes chrX_7_21470001 chrX_21470001 RAL-88 1628 chrX 21565412 21565439 chrX 21565490 21565497 4 73 0.5 2.0 1.2 1.8 85 chrX 21565412 intergenic not near genes chrX 21565454 intergenic not near genes chrX 21565497 intergenic not near genes chrX_4_21565001 chrX_21565001 RAL-88 1629 chrX 22448272 22448291 chrX 22448410 22448418 6 136 1.0 1.0 1.0 3.0 146 chrX 22448272 intron CG14615 - chrX 22448345 intron CG14615 - chrX 22448418 intron CG14615 - chrX_6_22445001 chrX_22445001 RAL-88 1630 chrX 22478886 22478893 chrX 22479019 22479025 4 132 0.0 3.5 1.8 1.4 139 chrX 22478886 intron CG12576 - chrX 22478956 intron CG12576 - chrX 22479025 intron CG12576 - chrX_4_22475001 chrX_22475001 RAL-88 1631 chrX 22522629 22522657 chrX 22525449 22525477 NOF 4 2818 3.0 0.0 1.5 1.6 2848 chrX 22522629 intron CG17600 + chrX 22524053 intron CG17600 + chrX 22525477 intron CG17600 + chrX_4_22520001 chrX_22520001 RAL-88 1632 chrX 22610516 22610541 chrX 22610806 22610831 6 290 0.0 1.0 0.5 4.0 315 chrX 22610516 intron Cda4 - chrX 22610674 intron Cda4 - chrX 22610831 exon Cda4 - chrX_6_22610001 chrX_22610001 RAL-88 1633 chrX 22697496 22697520 chrX 22701793 22701817 Juan 5 4297 3.5 3.0 3.2 1.2 4321 chrX 22697496 intron CR44997 + chrX 22699656 intron CR44997 + chrX 22701817 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-88 1634 chrX 22771504 22771536 chrX 22774795 22774827 297 4 3291 0.5 1.5 1.0 2.0 3323 chrX 22771504 intron CR44997 + chrX 22773166 intron CR44997 + chrX 22774827 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-88 1635 chrY 311343 311345 chrY 311459 311462 4 117 1.0 2.0 1.5 1.6 119 chrY 311343 intergenic not near genes chrY 311402 intergenic not near genes chrY 311462 intergenic not near genes chrY_4_310001 chrY_310001 RAL-88 1636 chrY 975796 975826 chrY 975876 975933 5 85 115.5 130.0 122.8 0.0 137 chrY 975796 intergenic not near genes chrY 975864 intergenic not near genes chrY 975933 intergenic not near genes chrY_5_975001 chrY_975001 RAL-88