SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47459 47487 chr2L 52564 52592 jockey 8 5104 6.5 4.0 5.2 1.3 5133 chr2L 47459 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-884 2 chr2L 125816 125832 chr2L 125963 125979 5 147 2.0 4.0 3.0 1.2 163 chr2L 125816 intron,intron CG11455 +,CG3164 - chr2L 125898 intron,intron CG11455 +,CG3164 - chr2L 125979 intron,intron CG11455 +,CG3164 - chr2L_5_125001 chr2L_125001 RAL-884 3 chr2L 325131 325156 chr2L 325206 325215 4 70 5.0 7.0 6.0 0.6 84 chr2L 325131 intron Plc21C + chr2L 325173 intron Plc21C + chr2L 325215 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-884 4 chr2L 666280 666285 chr2L 666355 666361 4 75 4.5 0.5 2.5 1.1 81 chr2L 666280 intron ds - chr2L 666320 intron ds - chr2L 666361 intron ds - chr2L_4_665001 chr2L_665001 RAL-884 5 chr2L 877849 877861 chr2L 877929 877936 4 79 6.0 3.0 4.5 0.7 87 chr2L 877849 3` UTR,exon CG15824 -,ninaA + chr2L 877892 3` UTR,intron CG15824 -,ninaA + chr2L 877936 3` UTR,intron CG15824 -,ninaA + chr2L_4_875001 chr2L_875001 RAL-884 6 chr2L 953498 953524 chr2L 953581 953609 5 74 2.0 2.5 2.2 1.6 111 chr2L 953498 exon CG4341 + chr2L 953554 intron CG4341 + chr2L 953609 intron CG4341 + chr2L_5_950001 chr2L_950001 RAL-884 7 chr2L 976893 976912 chr2L 984528 984548 roo 9 7636 4.0 4.0 4.0 1.8 7655 chr2L 976893 intergenic not near genes chr2L 980720 intergenic not near genes chr2L 984548 intergenic not near genes chr2L_9_980001 chr2L_980001 RAL-884 8 chr2L 1035575 1035593 chr2L 1035640 1035667 6 74 2.5 3.0 2.8 1.6 92 chr2L 1035575 intron IA-2 - chr2L 1035621 intron IA-2 - chr2L 1035667 intron IA-2 - chr2L_6_1035001 chr2L_1035001 RAL-884 9 chr2L 1126687 1126706 chr2L 1126749 1126781 6 70 2.0 1.5 1.8 2.1 94 chr2L 1126687 intron Pino - chr2L 1126734 intron Pino - chr2L 1126781 intron Pino - chr2L_6_1125001 chr2L_1125001 RAL-884 10 chr2L 1156866 1156870 chr2L 1156965 1156974 4 103 6.0 1.5 3.8 0.8 108 chr2L 1156866 intron capt - chr2L 1156920 intron capt - chr2L 1156974 intron capt - chr2L_4_1155001 chr2L_1155001 RAL-884 11 chr2L 1164250 1164282 chr2L 1164334 1164367 4 84 0.5 1.0 0.8 2.2 117 chr2L 1164250 intergenic IntS14 +,CG5080 - chr2L 1164308 intergenic IntS14 +,CG5080 - chr2L 1164367 intergenic IntS14 +,CG5080 - chr2L_4_1160001 chr2L_1160001 RAL-884 12 chr2L 1220128 1220162 chr2L 1227594 1227627 blood 11 7465 5.0 1.0 3.0 2.8 7499 chr2L 1220128 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_11_1220001 chr2L_1220001 RAL-884 13 chr2L 1289331 1289353 chr2L 1289413 1289435 7 82 6.5 2.5 4.5 1.3 104 chr2L 1289331 intron robo3 + chr2L 1289383 intron robo3 + chr2L 1289435 intron robo3 + chr2L_7_1285001 chr2L_1285001 RAL-884 14 chr2L 1322025 1322055 chr2L 1322114 1322144 6 85 1.5 2.0 1.8 2.1 119 chr2L 1322025 intergenic not near genes chr2L 1322084 intergenic not near genes chr2L 1322144 intergenic not near genes chr2L_6_1320001 chr2L_1320001 RAL-884 15 chr2L 1597295 1597329 chr2L 1597372 1597408 12 76 3.0 4.0 3.5 2.7 113 chr2L 1597295 intron,intron haf +,CG31935 - chr2L 1597352 intron,intron haf +,CG31935 - chr2L 1597408 intron,intron haf +,CG31935 - chr2L_12_1595001 chr2L_1595001 RAL-884 16 chr2L 1699322 1699343 chr2L 1699405 1699432 6 88 2.0 2.0 2.0 2.0 110 chr2L 1699322 3` UTR chinmo + chr2L 1699377 3` UTR chinmo + chr2L 1699432 3` UTR chinmo + chr2L_6_1695001 chr2L_1695001 RAL-884 17 chr2L 1711362 1711384 chr2L 1711683 1711696 mdg3 11 315 3.5 4.5 4.0 2.2 334 chr2L 1711362 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711529 3` UTR frtz - chr2L 1711696 3` UTR frtz - chr2L_11_1710001 chr2L_1710001 RAL-884 18 chr2L 1828402 1828431 chr2L 1828486 1828514 8 84 4.0 3.0 3.5 1.8 112 chr2L 1828402 intergenic not near genes chr2L 1828458 intergenic not near genes chr2L 1828514 intergenic not near genes chr2L_8_1825001 chr2L_1825001 RAL-884 19 chr2L 1883416 1883447 chr2L 1883999 1884026 5 578 0.0 0.0 0.0 5.0 610 chr2L 1883416 intron CG15358 - chr2L 1883721 intron CG15358 - chr2L 1884026 exon CG15358 - chr2L_5_1880001 chr2L_1880001 RAL-884 20 chr2L 2022716 2022743 chr2L 2022792 2022804 5 69 2.5 1.5 2.0 1.7 88 chr2L 2022716 intron CG4238 + chr2L 2022760 intron CG4238 + chr2L 2022804 intron CG4238 + chr2L_5_2020001 chr2L_2020001 RAL-884 21 chr2L 2100377 2100402 chr2L 2109526 2109543 roo 4 9148 3.0 2.5 2.8 1.1 9166 chr2L 2100377 intron dpr3 - chr2L 2104960 intron dpr3 - chr2L 2109543 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-884 22 chr2L 2112130 2112140 chr2L 2119773 2119775 opus 5 7640 3.0 2.5 2.8 1.3 7645 chr2L 2112130 intergenic not near genes chr2L 2115952 intergenic not near genes chr2L 2119775 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-884 23 chr2L 2125510 2125541 chr2L 2125852 2125889 25 345 9.5 36.0 22.8 1.1 379 chr2L 2125510 intergenic not near genes chr2L 2125700 intergenic not near genes chr2L 2125889 intergenic not near genes chr2L_25_2125001 chr2L_2125001 RAL-884 24 chr2L 2392163 2392174 chr2L 2392267 2392284 5 109 0.5 0.5 0.5 3.3 121 chr2L 2392163 intron VGlut + chr2L 2392224 intron VGlut + chr2L 2392284 intron VGlut + chr2L_5_2390001 chr2L_2390001 RAL-884 25 chr2L 2428793 2428816 chr2L 2428891 2428914 8 96 5.0 6.5 5.8 1.2 121 chr2L 2428793 5` UTR dpp + chr2L 2428854 5` UTR dpp + chr2L 2428914 5` UTR dpp + chr2L_8_2425001 chr2L_2425001 RAL-884 26 chr2L 2503719 2503740 chr2L 2504498 2504516 4 776 4.0 6.0 5.0 0.7 797 chr2L 2503719 intergenic not near genes chr2L 2504118 intergenic not near genes chr2L 2504516 intergenic not near genes chr2L_4_2500001 chr2L_2500001 RAL-884 27 chr2L 2698878 2698890 chr2L 2698965 2698977 6 86 3.0 5.0 4.0 1.2 99 chr2L 2698878 intron CG31690 + chr2L 2698928 intron CG31690 + chr2L 2698977 intron CG31690 + chr2L_6_2695001 chr2L_2695001 RAL-884 28 chr2L 2793942 2793966 chr2L 2794021 2794031 5 76 3.5 3.0 3.2 1.2 89 chr2L 2793942 intron Syt1 - chr2L 2793986 intron Syt1 - chr2L 2794031 intron Syt1 - chr2L_5_2790001 chr2L_2790001 RAL-884 29 chr2L 3026215 3026240 chr2L 3026889 3026903 4 666 26.5 29.5 28.0 0.1 688 chr2L 3026215 3` UTR CG3542 + chr2L 3026559 3` UTR CG3605 - chr2L 3026903 exon CG3605 - chr2L_4_3025001 chr2L_3025001 RAL-884 30 chr2L 3073029 3073058 chr2L 3078232 3078261 copia 10 5200 2.5 4.0 3.2 2.4 5232 chr2L 3073029 intron toc - chr2L 3075645 intron toc - chr2L 3078261 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-884 31 chr2L 3130813 3130827 chr2L 3131072 3131082 4 260 1.5 5.0 3.2 1.0 269 chr2L 3130813 intron toc - chr2L 3130948 intron toc - chr2L 3131082 intron toc - chr2L_4_3130001 chr2L_3130001 RAL-884 32 chr2L 3132425 3132434 chr2L 3132570 3132580 4 146 5.0 3.0 4.0 0.8 155 chr2L 3132425 intron toc - chr2L 3132502 intron toc - chr2L 3132580 intron toc - chr2L_4_3130001 chr2L_3130001 RAL-884 33 chr2L 3132438 3132460 chr2L 3132569 3132606 10 136 1.5 2.5 2.0 3.3 168 chr2L 3132438 intron toc - chr2L 3132522 intron toc - chr2L 3132606 intron toc - chr2L_10_3130001 chr2L_3130001 RAL-884 34 chr2L 3192208 3192222 chr2L 3192318 3192333 5 111 3.5 3.0 3.2 1.2 125 chr2L 3192208 exon CG34393 - chr2L 3192270 intron CG34393 - chr2L 3192333 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-884 35 chr2L 3251496 3251524 chr2L 3259061 3259088 springer 10 7562 5.5 3.0 4.2 1.9 7592 chr2L 3251496 intergenic not near genes chr2L 3255292 intergenic not near genes chr2L 3259088 intergenic not near genes chr2L_10_3255001 chr2L_3255001 RAL-884 36 chr2L 3393549 3393575 chr2L 3393658 3393686 8 110 2.0 3.5 2.8 2.1 137 chr2L 3393549 intergenic not near genes chr2L 3393618 intergenic not near genes chr2L 3393686 intergenic not near genes chr2L_8_3390001 chr2L_3390001 RAL-884 37 chr2L 3482152 3482176 chr2L 3482242 3482257 8 86 0.5 0.5 0.5 5.3 105 chr2L 3482152 intron CG15414 - chr2L 3482204 intron CG15414 - chr2L 3482257 intron CG15414 - chr2L_8_3480001 chr2L_3480001 RAL-884 38 chr2L 3582878 3582911 chr2L 3582955 3582988 9 76 0.5 4.0 2.2 2.8 110 chr2L 3582878 intergenic not near genes chr2L 3582933 intergenic not near genes chr2L 3582988 intergenic not near genes chr2L_9_3580001 chr2L_3580001 RAL-884 39 chr2L 3603625 3603652 chr2L 3603721 3603734 6 90 0.0 2.0 1.0 3.0 109 chr2L 3603625 intergenic not near genes chr2L 3603680 intergenic not near genes chr2L 3603734 intergenic odd - chr2L_6_3600001 chr2L_3600001 RAL-884 40 chr2L 3616586 3616593 chr2L 3616663 3616670 6 76 0.0 6.0 3.0 1.5 84 chr2L 3616586 5` UTR CR44310 + chr2L 3616628 5` UTR CR44310 + chr2L 3616670 5` UTR CR44310 + chr2L_6_3615001 chr2L_3615001 RAL-884 41 chr2L 3627891 3627896 chr2L 3627978 3627984 4 88 5.5 3.0 4.2 0.8 93 chr2L 3627891 intron for - chr2L 3627938 intron for - chr2L 3627984 intron for - chr2L_4_3625001 chr2L_3625001 RAL-884 42 chr2L 3627898 3627911 chr2L 3627974 3627999 8 84 3.5 3.0 3.2 1.9 101 chr2L 3627898 intron for - chr2L 3627948 intron for - chr2L 3627999 intron for - chr2L_8_3625001 chr2L_3625001 RAL-884 43 chr2L 3634103 3634138 chr2L 3634185 3634217 7 79 3.5 5.0 4.2 1.3 114 chr2L 3634103 intron for - chr2L 3634160 intron for - chr2L 3634217 intron for - chr2L_7_3630001 chr2L_3630001 RAL-884 44 chr2L 3649796 3649821 chr2L 3654993 3655023 copia 4 5201 1.0 3.5 2.2 1.2 5227 chr2L 3649796 intron for - chr2L 3652410 intron for - chr2L 3655023 intron for - chr2L_4_3650001 chr2L_3650001 RAL-884 45 chr2L 3663311 3663339 chr2L 3663390 3663403 6 76 1.5 2.5 2.0 2.0 92 chr2L 3663311 intron CG34340 + chr2L 3663357 intron CG34340 + chr2L 3663403 intron CG34340 + chr2L_6_3660001 chr2L_3660001 RAL-884 46 chr2L 3831848 3831864 chr2L 3831929 3831945 4 80 3.0 2.5 2.8 1.1 97 chr2L 3831848 intergenic not near genes chr2L 3831896 intergenic not near genes chr2L 3831945 intergenic not near genes chr2L_4_3830001 chr2L_3830001 RAL-884 47 chr2L 3891893 3891921 chr2L 3891977 3891993 8 83 4.0 2.0 3.0 2.0 100 chr2L 3891893 intron capu - chr2L 3891943 intron capu - chr2L 3891993 intron capu - chr2L_8_3890001 chr2L_3890001 RAL-884 48 chr2L 4008274 4008295 chr2L 4008358 4008371 6 83 1.0 2.5 1.8 2.1 97 chr2L 4008274 intergenic CG43773 +,CG43774 + chr2L 4008322 intergenic CG43774 +,CG43773 + chr2L 4008371 intergenic CG43774 +,CG43773 + chr2L_6_4005001 chr2L_4005001 RAL-884 49 chr2L 4066048 4066060 chr2L 4068870 4068879 Juan 4 2823 2.0 3.5 2.8 1.1 2831 chr2L 4066048 intron ed + chr2L 4067464 intron ed + chr2L 4068879 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-884 50 chr2L 4166380 4166409 chr2L 4166463 4166491 4 80 2.5 3.0 2.8 1.1 111 chr2L 4166380 intergenic Or24a - chr2L 4166436 intergenic Or24a - chr2L 4166491 intergenic Or24a - chr2L_4_4165001 chr2L_4165001 RAL-884 51 chr2L 4265667 4265679 chr2L 4265757 4265769 5 90 1.5 2.0 1.8 1.8 102 chr2L 4265667 intergenic not near genes chr2L 4265718 intergenic not near genes chr2L 4265769 intergenic not near genes chr2L_5_4265001 chr2L_4265001 RAL-884 52 chr2L 4270477 4270482 chr2L 4270540 4270543 4 66 3.0 6.0 4.5 0.7 66 chr2L 4270477 intergenic not near genes chr2L 4270510 intergenic not near genes chr2L 4270543 intergenic not near genes chr2L_4_4270001 chr2L_4270001 RAL-884 53 chr2L 4351477 4351501 chr2L 4351553 4351570 8 73 4.0 3.5 3.8 1.7 93 chr2L 4351477 intergenic CR44700 + chr2L 4351524 intergenic CR44700 + chr2L 4351570 intergenic CR44700 + chr2L_8_4350001 chr2L_4350001 RAL-884 54 chr2L 4437210 4437242 chr2L 4437290 4437322 5 79 0.5 3.0 1.8 1.8 112 chr2L 4437210 intron CG15431 - chr2L 4437266 intron CG15431 - chr2L 4437322 intron CG15431 - chr2L_5_4435001 chr2L_4435001 RAL-884 55 chr2L 4601720 4601731 chr2L 4609150 4609172 mdg1 4 7435 2.5 3.5 3.0 1.0 7452 chr2L 4601720 intron dp - chr2L 4605446 intron dp - chr2L 4609172 intron dp - chr2L_4_4605001 chr2L_4605001 RAL-884 56 chr2L 4861223 4861246 chr2L 4861311 4861334 7 88 1.0 2.5 1.8 2.5 111 chr2L 4861223 intron pog + chr2L 4861278 intron pog + chr2L 4861334 intron pog + chr2L_7_4860001 chr2L_4860001 RAL-884 57 chr2L 4918167 4918196 chr2L 4923239 4923269 jockey 4 5073 0.5 2.0 1.2 1.8 5102 chr2L 4918167 intron hoe1 - chr2L 4920718 intron hoe1 - chr2L 4923269 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-884 58 chr2L 5242936 5242936 chr2L 16217660 16217660 4 10974724 17.0 27.0 22.0 0.2 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_4_10730001 chr2L_10730001 RAL-884 59 chr2L 5511325 5511349 chr2L 5511407 5511432 6 82 1.5 0.5 1.0 3.0 107 chr2L 5511325 intergenic not near genes chr2L 5511378 intergenic not near genes chr2L 5511432 intergenic not near genes chr2L_6_5510001 chr2L_5510001 RAL-884 60 chr2L 5634173 5634209 chr2L 5634264 5634282 7 87 4.5 1.5 3.0 1.8 109 chr2L 5634173 intron CG31646 - chr2L 5634228 intron CG31646 - chr2L 5634282 intron CG31646 - chr2L_7_5630001 chr2L_5630001 RAL-884 61 chr2L 5720261 5720288 chr2L 5720348 5720371 5 86 2.0 1.0 1.5 2.0 110 chr2L 5720261 intron CG11149 - chr2L 5720316 intron CG11149 - chr2L 5720371 intron CG11149 - chr2L_5_5720001 chr2L_5720001 RAL-884 62 chr2L 5745287 5745308 chr2L 5745365 5745386 4 77 3.0 1.0 2.0 1.3 99 chr2L 5745287 intron CG11030 + chr2L 5745336 intron CG11030 + chr2L 5745386 intron CG11030 + chr2L_4_5745001 chr2L_5745001 RAL-884 63 chr2L 5805723 5805743 chr2L 5807678 5807693 4 1954 18.0 33.0 25.5 0.2 1970 chr2L 5805723 intron CG11034 + chr2L 5806708 exon CG11034 + chr2L 5807693 exon CG11034 + chr2L_4_5805001 chr2L_5805001 RAL-884 64 chr2L 5816180 5816219 chr2L 5816256 5816295 8 76 1.5 2.5 2.0 2.7 115 chr2L 5816180 intergenic not near genes chr2L 5816238 intergenic not near genes chr2L 5816295 intergenic not near genes chr2L_8_5815001 chr2L_5815001 RAL-884 65 chr2L 5827717 5827740 chr2L 5836725 5836747 roo 8 9007 3.0 3.5 3.2 1.9 9030 chr2L 5827717 intron TrissinR + chr2L 5832232 intron TrissinR + chr2L 5836747 intron TrissinR + chr2L_8_5830001 chr2L_5830001 RAL-884 66 chr2L 5864709 5864723 chr2L 5865073 5865098 5 373 2.0 0.5 1.2 2.3 389 chr2L 5864709 intron rau - chr2L 5864904 intron rau - chr2L 5865098 intron rau - chr2L_5_5860001 chr2L_5860001 RAL-884 67 chr2L 6037042 6037064 chr2L 6037115 6037115 8 71 3.0 1.5 2.2 2.5 73 chr2L 6037042 3` UTR CG9117 - chr2L 6037078 3` UTR CG9117 - chr2L 6037115 3` UTR CG9117 - chr2L_8_6035001 chr2L_6035001 RAL-884 68 chr2L 6050453 6050468 chr2L 6050557 6050560 4 101 1.5 4.0 2.8 1.1 107 chr2L 6050453 intergenic CG12393 +,CG9135 + chr2L 6050506 intergenic CG12393 +,CG9135 + chr2L 6050560 intergenic CG12393 +,CG9135 + chr2L_4_6050001 chr2L_6050001 RAL-884 69 chr2L 6064177 6064192 chr2L 6064262 6064266 4 82 4.5 5.0 4.8 0.7 89 chr2L 6064177 exon Fbw5 - chr2L 6064222 exon Fbw5 - chr2L 6064266 exon Fbw5 - chr2L_4_6060001 chr2L_6060001 RAL-884 70 chr2L 6182092 6182112 chr2L 6182181 6182183 5 85 2.0 3.5 2.8 1.3 91 chr2L 6182092 intron CG34380 + chr2L 6182138 intron CG34380 + chr2L 6182183 intron CG34380 + chr2L_5_6180001 chr2L_6180001 RAL-884 71 chr2L 6242860 6242882 chr2L 6242944 6242966 4 84 1.0 0.0 0.5 2.7 106 chr2L 6242860 intergenic not near genes chr2L 6242913 intergenic not near genes chr2L 6242966 intergenic not near genes chr2L_4_6240001 chr2L_6240001 RAL-884 72 chr2L 6283942 6283973 chr2L 6284053 6284084 5 108 2.0 0.5 1.2 2.3 142 chr2L 6283942 intron Ddr + chr2L 6284013 intron Ddr + chr2L 6284084 intron Ddr + chr2L_5_6280001 chr2L_6280001 RAL-884 73 chr2L 6310876 6310900 chr2L 6310955 6310979 6 78 0.0 2.5 1.2 2.7 103 chr2L 6310876 intron Ddr + chr2L 6310928 intron Ddr + chr2L 6310979 intron Ddr + chr2L_6_6310001 chr2L_6310001 RAL-884 74 chr2L 6426854 6426888 chr2L 6445114 6445130 roo 14 18257 3.5 3.5 3.5 3.1 18276 chr2L 6426854 3` UTR CG9527 - chr2L 6435992 intron CG9527 - chr2L 6445130 exon CG9527 - chr2L_14_6435001 chr2L_6435001 RAL-884 75 chr2L 6463553 6463580 chr2L 6463645 6463668 5 90 5.5 2.5 4.0 1.0 115 chr2L 6463553 exon CG16947 - chr2L 6463610 exon CG16947 - chr2L 6463668 exon CG16947 - chr2L_5_6460001 chr2L_6460001 RAL-884 76 chr2L 6950168 6950191 chr2L 6950373 6950396 7 205 2.5 5.5 4.0 1.4 228 chr2L 6950168 5` UTR Gas41 - chr2L 6950282 intergenic Gas41 -,SA + chr2L 6950396 intergenic SA +,Gas41 - chr2L_7_6950001 chr2L_6950001 RAL-884 77 chr2L 7249644 7249652 chr2L 7249703 7249704 6 64 1.5 1.0 1.2 2.7 60 chr2L 7249644 intergenic Ndae1 - chr2L 7249674 intergenic Ndae1 - chr2L 7249704 intergenic Ndae1 - chr2L_6_7245001 chr2L_7245001 RAL-884 78 chr2L 7343325 7343340 chr2L 7350440 7350443 roo 4 7110 5.5 1.0 3.2 1.0 7118 chr2L 7343325 intron Wnt6 + chr2L 7346884 intron Wnt6 + chr2L 7350443 intron Wnt6 + chr2L_4_7345001 chr2L_7345001 RAL-884 79 chr2L 7493674 7493701 chr2L 7493885 7493912 6 206 2.0 2.0 2.0 2.0 238 chr2L 7493674 intron Ziz - chr2L 7493793 intron Ziz - chr2L 7493912 intron Ziz - chr2L_6_7490001 chr2L_7490001 RAL-884 80 chr2L 7516333 7516353 chr2L 7516447 7516463 5 114 4.5 4.5 4.5 0.9 130 chr2L 7516333 intron RapGAP1 - chr2L 7516398 intron RapGAP1 - chr2L 7516463 intron RapGAP1 - chr2L_5_7515001 chr2L_7515001 RAL-884 81 chr2L 7555219 7555232 chr2L 7555296 7555309 4 77 0.0 4.0 2.0 1.3 90 chr2L 7555219 intron RapGAP1 - chr2L 7555264 intron RapGAP1 - chr2L 7555309 intron RapGAP1 - chr2L_4_7555001 chr2L_7555001 RAL-884 82 chr2L 7653043 7653072 chr2L 7653137 7653166 7 90 2.5 0.0 1.2 3.2 123 chr2L 7653043 intron Slob - chr2L 7653104 intron Slob - chr2L 7653166 intron Slob - chr2L_7_7650001 chr2L_7650001 RAL-884 83 chr2L 7768860 7768881 chr2L 7768927 7768957 5 74 0.0 3.0 1.5 2.0 97 chr2L 7768860 intron CG7191 + chr2L 7768908 intron CG7191 + chr2L 7768957 intron CG7191 + chr2L_5_7765001 chr2L_7765001 RAL-884 84 chr2L 7811231 7811240 chr2L 7811363 7811365 4 130 0.0 4.5 2.2 1.2 134 chr2L 7811231 intergenic LanB1 + chr2L 7811298 intergenic LanB1 + chr2L 7811365 intergenic LanB1 + chr2L_4_7810001 chr2L_7810001 RAL-884 85 chr2L 7867564 7867602 chr2L 7867658 7867696 5 89 1.5 3.0 2.2 1.6 132 chr2L 7867564 intron Proc - chr2L 7867630 intron Proc - chr2L 7867696 intron Proc - chr2L_5_7865001 chr2L_7865001 RAL-884 86 chr2L 7922743 7922775 chr2L 7922824 7922835 9 77 2.0 0.5 1.2 4.1 92 chr2L 7922743 intron Snoo - chr2L 7922789 intron Snoo - chr2L 7922835 intron Snoo - chr2L_9_7920001 chr2L_7920001 RAL-884 87 chr2L 7965876 7965906 chr2L 7965959 7965964 4 70 1.5 1.5 1.5 1.6 88 chr2L 7965876 intron Snoo - chr2L 7965920 intron Snoo - chr2L 7965964 intron Snoo - chr2L_4_7965001 chr2L_7965001 RAL-884 88 chr2L 7977090 7977111 chr2L 7984066 7984078 297 7 6973 2.5 3.5 3.0 1.8 6988 chr2L 7977090 intron Snoo - chr2L 7980584 intron Snoo - chr2L 7984078 intron,5` UTR Snoo -,CG7231 + chr2L_7_7980001 chr2L_7980001 RAL-884 89 chr2L 8018820 8018832 chr2L 8023581 8023616 Doc 5 4778 0.0 1.0 0.5 3.3 4796 chr2L 8018820 intron Tg + chr2L 8021218 intron Tg + chr2L 8023616 intron Tg + chr2L_5_8020001 chr2L_8020001 RAL-884 90 chr2L 8044109 8044128 chr2L 8044174 8044207 7 76 1.5 3.0 2.2 2.2 98 chr2L 8044109 intron CG7466 + chr2L 8044158 intron CG7466 + chr2L 8044207 intron CG7466 + chr2L_7_8040001 chr2L_8040001 RAL-884 91 chr2L 8184918 8184954 chr2L 8185009 8185024 9 87 2.0 0.5 1.2 4.1 106 chr2L 8184918 intron Piezo + chr2L 8184971 intron Piezo + chr2L 8185024 intron Piezo + chr2L_9_8180001 chr2L_8180001 RAL-884 92 chr2L 8244738 8244748 chr2L 8244860 8244870 7 122 1.5 3.0 2.2 2.2 132 chr2L 8244738 intron CG8086 - chr2L 8244804 intron CG8086 - chr2L 8244870 intron CG8086 - chr2L_7_8240001 chr2L_8240001 RAL-884 93 chr2L 8258167 8258199 chr2L 8258263 8258296 6 97 1.0 1.0 1.0 3.0 129 chr2L 8258167 intergenic Btk29A -,mir-2b-1 - chr2L 8258232 intergenic Btk29A -,mir-2b-1 - chr2L 8258296 intergenic Btk29A -,mir-2b-1 - chr2L_6_8255001 chr2L_8255001 RAL-884 94 chr2L 8291497 8291528 chr2L 8291635 8291657 10 136 3.0 2.0 2.5 2.9 160 chr2L 8291497 intron Btk29A - chr2L 8291577 intron Btk29A - chr2L 8291657 intron Btk29A - chr2L_10_8290001 chr2L_8290001 RAL-884 95 chr2L 8323704 8323732 chr2L 8323804 8323831 5 100 1.5 4.5 3.0 1.2 127 chr2L 8323704 intron CG7781 - chr2L 8323768 intron CG7781 - chr2L 8323831 intron CG7781 - chr2L_5_8320001 chr2L_8320001 RAL-884 96 chr2L 8502670 8502687 chr2L 8502754 8502759 10 80 1.0 5.0 3.0 2.5 89 chr2L 8502670 intron Dh31 - chr2L 8502714 intron Dh31 - chr2L 8502759 intron Dh31 - chr2L_10_8500001 chr2L_8500001 RAL-884 97 chr2L 8538171 8538193 chr2L 8538246 8538253 4 71 3.0 0.0 1.5 1.6 82 chr2L 8538171 intron CG17834 + chr2L 8538212 intron CG17834 + chr2L 8538253 intron CG17834 + chr2L_4_8535001 chr2L_8535001 RAL-884 98 chr2L 8558611 8558644 chr2L 8558706 8558738 13 91 2.0 2.5 2.2 4.1 127 chr2L 8558611 intron Sema-1a + chr2L 8558674 intron Sema-1a + chr2L 8558738 intron Sema-1a + chr2L_13_8555001 chr2L_8555001 RAL-884 99 chr2L 8612859 8612868 chr2L 8612936 8612945 6 76 3.0 7.0 5.0 1.0 86 chr2L 8612859 intron Sema-1a + chr2L 8612902 intron Sema-1a + chr2L 8612945 intron Sema-1a + chr2L_6_8610001 chr2L_8610001 RAL-884 100 chr2L 8723113 8723147 chr2L 8731490 8731503 Tirant 14 8372 1.5 3.0 2.2 4.4 8390 chr2L 8723113 intron raw - chr2L 8727308 intron raw - chr2L 8731503 intron raw - chr2L_14_8725001 chr2L_8725001 RAL-884 101 chr2L 9000279 9000309 chr2L 9007789 9007789 roo 8 7506 3.5 1.0 2.2 2.5 7510 chr2L 9000279 intergenic Try29F + chr2L 9004034 intergenic not near genes chr2L 9007789 intergenic not near genes chr2L_8_9000001 chr2L_9000001 RAL-884 102 chr2L 9007813 9007821 chr2L 9007892 9007900 6 77 4.0 0.0 2.0 2.0 87 chr2L 9007813 intergenic not near genes chr2L 9007856 intergenic not near genes chr2L 9007900 intergenic not near genes chr2L_6_9005001 chr2L_9005001 RAL-884 103 chr2L 9023153 9023187 chr2L 9023250 9023283 12 91 4.0 4.0 4.0 2.4 130 chr2L 9023153 intergenic not near genes chr2L 9023218 intergenic not near genes chr2L 9023283 intergenic not near genes chr2L_12_9020001 chr2L_9020001 RAL-884 104 chr2L 9040030 9040060 chr2L 9040117 9040131 8 83 2.5 0.5 1.5 3.2 101 chr2L 9040030 intergenic not near genes chr2L 9040080 intergenic not near genes chr2L 9040131 intergenic not near genes chr2L_8_9040001 chr2L_9040001 RAL-884 105 chr2L 9084336 9084340 chr2L 16217660 16217660 13 7133321 13.5 27.0 20.2 0.6 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_12650001 chr2L_12650001 RAL-884 106 chr2L 9152149 9152176 chr2L 9152228 9152228 5 68 0.5 2.5 1.5 2.0 79 chr2L 9152149 intron CG32982 + chr2L 9152188 intron CG32982 + chr2L 9152228 intron CG32982 + chr2L_5_9150001 chr2L_9150001 RAL-884 107 chr2L 9236284 9236315 chr2L 9236411 9236433 8 126 3.0 2.0 2.5 2.3 149 chr2L 9236284 intron tai + chr2L 9236358 intron tai + chr2L 9236433 intron tai + chr2L_8_9235001 chr2L_9235001 RAL-884 108 chr2L 9251144 9251177 chr2L 9251241 9251269 6 90 4.0 3.5 3.8 1.2 125 chr2L 9251144 intergenic aust -,borr - chr2L 9251206 intergenic aust -,borr - chr2L 9251269 intergenic borr -,aust - chr2L_6_9250001 chr2L_9250001 RAL-884 109 chr2L 9264344 9264381 chr2L 9264444 9264481 7 93 3.0 2.0 2.5 2.0 137 chr2L 9264344 intron Ggamma30A + chr2L 9264412 intron Ggamma30A + chr2L 9264481 intron Ggamma30A + chr2L_7_9260001 chr2L_9260001 RAL-884 110 chr2L 9287347 9287356 chr2L 9287420 9287453 4 86 1.5 1.0 1.2 1.8 106 chr2L 9287347 intron Ggamma30A + chr2L 9287400 intron Ggamma30A + chr2L 9287453 intron Ggamma30A + chr2L_4_9285001 chr2L_9285001 RAL-884 111 chr2L 9297393 9297398 chr2L 9297462 9297475 4 72 4.0 6.0 5.0 0.7 82 chr2L 9297393 3` UTR Ggamma30A + chr2L 9297434 3` UTR Ggamma30A + chr2L 9297475 3` UTR Ggamma30A + chr2L_4_9295001 chr2L_9295001 RAL-884 112 chr2L 9303520 9303548 chr2L 9303600 9303601 6 74 1.0 2.5 1.8 2.1 81 chr2L 9303520 intergenic not near genes chr2L 9303560 intergenic not near genes chr2L 9303601 intergenic not near genes chr2L_6_9300001 chr2L_9300001 RAL-884 113 chr2L 9393504 9393526 chr2L 9396467 9396493 jockey 7 2966 4.5 4.0 4.2 1.3 2989 chr2L 9393504 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396493 intron Shawl - chr2L_7_9390001 chr2L_9390001 RAL-884 114 chr2L 9619500 9619520 chr2L 9619837 9619842 6 334 1.5 2.0 1.8 2.1 342 chr2L 9619500 intron GlcAT-S + chr2L 9619671 intron GlcAT-S + chr2L 9619842 intron GlcAT-S + chr2L_6_9615001 chr2L_9615001 RAL-884 115 chr2L 9679472 9679483 chr2L 9679552 9679563 4 80 2.5 0.0 1.2 1.8 91 chr2L 9679472 intergenic not near genes chr2L 9679518 intergenic not near genes chr2L 9679563 intergenic not near genes chr2L_4_9675001 chr2L_9675001 RAL-884 116 chr2L 10051734 10051753 chr2L 10051814 10051833 9 81 2.5 4.0 3.2 2.1 99 chr2L 10051734 5` UTR CR44874 + chr2L 10051784 5` UTR CR44874 + chr2L 10051833 5` UTR CR44874 + chr2L_9_10050001 chr2L_10050001 RAL-884 117 chr2L 10105300 10105310 chr2L 10105355 10105355 4 62 2.5 4.0 3.2 1.0 55 chr2L 10105300 intron,intron CG44153 -,CG34109 + chr2L 10105328 intron,intron CG44153 -,CG34109 + chr2L 10105355 intron,intron CG44153 -,CG34109 + chr2L_4_10105001 chr2L_10105001 RAL-884 118 chr2L 10156329 10156351 chr2L 10163796 10163818 blood 11 7468 3.0 2.0 2.5 3.1 7489 chr2L 10156329 intron,3` UTR CG44153 -,CG4839 + chr2L 10160074 intron CG44153 - chr2L 10163818 intron CG44153 - chr2L_11_10160001 chr2L_10160001 RAL-884 119 chr2L 10474397 10474406 chr2L 10474467 10474484 5 75 8.0 1.0 4.5 0.9 87 chr2L 10474397 intergenic RluA-1 - chr2L 10474440 intergenic RluA-1 - chr2L 10474484 intergenic RluA-1 - chr2L_5_10470001 chr2L_10470001 RAL-884 120 chr2L 10480312 10480334 chr2L 10480389 10480410 6 77 2.0 0.5 1.2 2.7 98 chr2L 10480312 intron RluA-2 + chr2L 10480361 intron RluA-2 + chr2L 10480410 intron RluA-2 + chr2L_6_10480001 chr2L_10480001 RAL-884 121 chr2L 10495300 10495463 chr2L 10495369 10495548 8 80 1.0 0.0 0.5 5.3 248 chr2L 10495300 intron Myo31DF - chr2L 10495424 intron Myo31DF - chr2L 10495548 intron Myo31DF - chr2L_8_10495001 chr2L_10495001 RAL-884 122 chr2L 10515361 10515385 chr2L 10515454 10515478 4 93 1.5 1.0 1.2 1.8 117 chr2L 10515361 intron,intron CG45083 -,Fatp - chr2L 10515420 intron,intron CG45083 -,Fatp - chr2L 10515478 intron,intron CG45083 -,Fatp - chr2L_4_10515001 chr2L_10515001 RAL-884 123 chr2L 10572709 10572731 chr2L 10572790 10572812 5 81 3.5 1.5 2.5 1.4 103 chr2L 10572709 intron Trim9 + chr2L 10572760 intron Trim9 + chr2L 10572812 intron Trim9 + chr2L_5_10570001 chr2L_10570001 RAL-884 124 chr2L 10580790 10580822 chr2L 10580871 10580900 5 80 2.5 1.0 1.8 1.8 110 chr2L 10580790 intron Trim9 + chr2L 10580845 intron Trim9 + chr2L 10580900 intron Trim9 + chr2L_5_10580001 chr2L_10580001 RAL-884 125 chr2L 10836328 10836365 chr2L 10836409 10836446 9 79 1.0 4.5 2.8 2.4 118 chr2L 10836328 intron Nos - chr2L 10836387 intron Nos - chr2L 10836446 intron Nos - chr2L_9_10835001 chr2L_10835001 RAL-884 126 chr2L 10862864 10862875 chr2L 10864453 10864472 Rt1c 7 1606 3.5 3.5 3.5 1.6 1608 chr2L 10862864 3` UTR CR43807 - chr2L 10863668 intron CR43807 - chr2L 10864472 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-884 127 chr2L 10912988 10912998 chr2L 10913067 10913077 4 79 5.0 6.5 5.8 0.6 89 chr2L 10912988 intergenic not near genes chr2L 10913032 intergenic not near genes chr2L 10913077 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-884 128 chr2L 10946950 10946973 chr2L 10956162 10956188 roo 6 9214 1.5 2.5 2.0 2.0 9238 chr2L 10946950 intron dpr2 - chr2L 10951569 intron dpr2 - chr2L 10956188 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-884 129 chr2L 11083155 11083168 chr2L 11083231 11083245 5 76 2.5 6.5 4.5 0.9 90 chr2L 11083155 intergenic AstCC - chr2L 11083200 intergenic AstCC - chr2L 11083245 intergenic AstCC - chr2L_5_11080001 chr2L_11080001 RAL-884 130 chr2L 11379950 11379968 chr2L 11380032 11380033 4 75 2.0 0.0 1.0 2.0 83 chr2L 11379950 intergenic not near genes chr2L 11379992 intergenic not near genes chr2L 11380033 intergenic not near genes chr2L_4_11375001 chr2L_11375001 RAL-884 131 chr2L 11380610 11380644 chr2L 11380687 11380721 4 73 3.0 1.5 2.2 1.2 111 chr2L 11380610 intergenic not near genes chr2L 11380666 intergenic not near genes chr2L 11380721 intergenic not near genes chr2L_4_11380001 chr2L_11380001 RAL-884 132 chr2L 11418667 11418678 chr2L 11418741 11418757 5 77 4.5 2.5 3.5 1.1 90 chr2L 11418667 intergenic not near genes chr2L 11418712 intergenic not near genes chr2L 11418757 intergenic not near genes chr2L_5_11415001 chr2L_11415001 RAL-884 133 chr2L 11540331 11540356 chr2L 11540487 11540514 4 158 3.5 1.5 2.5 1.1 183 chr2L 11540331 intergenic not near genes chr2L 11540422 intergenic not near genes chr2L 11540514 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-884 134 chr2L 11540610 11540615 chr2L 11548012 11548015 Tabor 5 7402 4.0 1.5 2.8 1.3 7405 chr2L 11540610 intergenic not near genes chr2L 11544312 intergenic not near genes chr2L 11548015 intergenic not near genes chr2L_5_11540001 chr2L_11540001 RAL-884 135 chr2L 11563646 11563665 chr2L 11568841 11568869 copia 5 5201 6.0 4.0 5.0 0.8 5223 chr2L 11563646 intergenic not near genes chr2L 11566258 intergenic not near genes chr2L 11568869 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-884 136 chr2L 11612667 11612695 chr2L 11612754 11612783 9 86 3.5 4.5 4.0 1.8 116 chr2L 11612667 intron kek2 + chr2L 11612725 intron kek2 + chr2L 11612783 intron kek2 + chr2L_9_11610001 chr2L_11610001 RAL-884 137 chr2L 11713515 11713521 chr2L 11720983 11720988 blood 5 7467 5.5 4.5 5.0 0.8 7473 chr2L 11713515 intergenic not near genes chr2L 11717252 intergenic not near genes chr2L 11720988 intergenic CR44143 + chr2L_5_11715001 chr2L_11715001 RAL-884 138 chr2L 11826187 11826197 chr2L 11826263 11826277 5 80 5.0 2.5 3.8 1.0 90 chr2L 11826187 intron Pde1c - chr2L 11826232 intron Pde1c - chr2L 11826277 intron Pde1c - chr2L_5_11825001 chr2L_11825001 RAL-884 139 chr2L 11828439 11828464 chr2L 11828514 11828533 5 74 2.0 2.0 2.0 1.7 94 chr2L 11828439 intron,intron Pde1c -,esc - chr2L 11828486 intron,intron Pde1c -,esc - chr2L 11828533 intron,intron Pde1c -,esc - chr2L_5_11825001 chr2L_11825001 RAL-884 140 chr2L 11910961 11910974 chr2L 11911039 11911047 4 76 4.0 1.5 2.8 1.1 86 chr2L 11910961 intron Pde1c - chr2L 11911004 intron Pde1c - chr2L 11911047 intron Pde1c - chr2L_4_11910001 chr2L_11910001 RAL-884 141 chr2L 12349645 12349665 chr2L 12349727 12349759 5 87 1.5 0.5 1.0 2.5 114 chr2L 12349645 intron bru-2 + chr2L 12349702 intron bru-2 + chr2L 12349759 intron bru-2 + chr2L_5_12345001 chr2L_12345001 RAL-884 142 chr2L 12353967 12353985 chr2L 12354453 12354478 5 488 3.0 3.0 3.0 1.2 511 chr2L 12353967 intron bru-2 + chr2L 12354222 intron bru-2 + chr2L 12354478 intron bru-2 + chr2L_5_12350001 chr2L_12350001 RAL-884 143 chr2L 12426132 12426160 chr2L 12426215 12426232 6 76 4.0 3.5 3.8 1.2 100 chr2L 12426132 exon CG6405 + chr2L 12426182 exon CG6405 + chr2L 12426232 exon CG6405 + chr2L_6_12425001 chr2L_12425001 RAL-884 144 chr2L 12474953 12474958 chr2L 12475130 12475136 4 177 6.5 1.5 4.0 0.8 183 chr2L 12474953 intron bun - chr2L 12475044 intron bun - chr2L 12475136 intron bun - chr2L_4_12475001 chr2L_12475001 RAL-884 145 chr2L 12728934 12728942 chr2L 12729171 12729181 pogo 4 238 2.5 4.0 3.2 1.0 247 chr2L 12728934 intron MRP + chr2L 12729058 intron MRP + chr2L 12729181 intron MRP + chr2L_4_12725001 chr2L_12725001 RAL-884 146 chr2L 12731056 12731089 chr2L 12735823 12735856 F-element 5 4767 4.5 3.0 3.8 1.0 4800 chr2L 12731056 intron MRP + chr2L 12733456 intron MRP + chr2L 12735856 intron MRP + chr2L_5_12730001 chr2L_12730001 RAL-884 147 chr2L 12739177 12739198 chr2L 12743954 12743979 Doc 7 4777 1.5 4.5 3.0 1.8 4802 chr2L 12739177 exon MRP + chr2L 12741578 intron MRP + chr2L 12743979 exon MRP + chr2L_7_12740001 chr2L_12740001 RAL-884 148 chr2L 12751333 12751338 chr2L 12751395 12751421 4 78 1.5 3.5 2.5 1.1 88 chr2L 12751333 intergenic not near genes chr2L 12751377 intergenic not near genes chr2L 12751421 intergenic not near genes chr2L_4_12750001 chr2L_12750001 RAL-884 149 chr2L 12759209 12759237 chr2L 12759301 12759332 7 93 1.0 2.5 1.8 2.5 123 chr2L 12759209 intergenic not near genes chr2L 12759270 intergenic not near genes chr2L 12759332 intergenic not near genes chr2L_7_12755001 chr2L_12755001 RAL-884 150 chr2L 12809196 12809221 chr2L 12809282 12809307 4 86 1.0 1.0 1.0 2.0 111 chr2L 12809196 intergenic not near genes chr2L 12809252 intergenic not near genes chr2L 12809307 intergenic not near genes chr2L_4_12805001 chr2L_12805001 RAL-884 151 chr2L 12861694 12861725 chr2L 12863160 12863183 hobo 18 1465 1.0 2.0 1.5 7.2 1489 chr2L 12861694 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863183 intergenic not near genes chr2L_18_12860001 chr2L_12860001 RAL-884 152 chr2L 12933852 12933864 chr2L 12941318 12941329 blood 8 7466 7.5 1.5 4.5 1.5 7477 chr2L 12933852 intergenic not near genes chr2L 12937590 intergenic not near genes chr2L 12941329 intergenic not near genes chr2L_8_12935001 chr2L_12935001 RAL-884 153 chr2L 12933867 12933880 chr2L 12941317 12941346 blood 7 7458 5.5 1.5 3.5 1.6 7479 chr2L 12933867 intergenic not near genes chr2L 12937606 intergenic not near genes chr2L 12941346 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-884 154 chr2L 13036251 13036257 chr2L 13036492 13036499 X-element 4 241 2.0 1.5 1.8 1.4 248 chr2L 13036251 intron CG9932 - chr2L 13036375 intron CG9932 - chr2L 13036499 intron CG9932 - chr2L_4_13035001 chr2L_13035001 RAL-884 155 chr2L 13139460 13139484 chr2L 13139545 13139572 5 82 1.5 2.5 2.0 1.7 112 chr2L 13139460 intergenic not near genes chr2L 13139516 intergenic not near genes chr2L 13139572 intergenic not near genes chr2L_5_13135001 chr2L_13135001 RAL-884 156 chr2L 13231882 13231913 chr2L 13231993 13232010 9 107 3.5 3.0 3.2 2.1 128 chr2L 13231882 intergenic Prosalpha6T + chr2L 13231946 intergenic Prosalpha6T + chr2L 13232010 intergenic Prosalpha6T + chr2L_9_13230001 chr2L_13230001 RAL-884 157 chr2L 13266378 13266412 chr2L 13266465 13266497 12 79 2.0 3.0 2.5 3.4 119 chr2L 13266378 intron CG44085 + chr2L 13266438 intron CG44085 + chr2L 13266497 intron CG44085 + chr2L_12_13265001 chr2L_13265001 RAL-884 158 chr2L 13351822 13351851 chr2L 13351908 13351921 17 84 3.5 5.0 4.2 3.3 99 chr2L 13351822 exon CG9395 - chr2L 13351872 intron CG9395 - chr2L 13351921 intron CG9395 - chr2L_17_13350001 chr2L_13350001 RAL-884 159 chr2L 13374326 13374355 chr2L 13374411 13374442 10 84 3.5 1.5 2.5 2.9 116 chr2L 13374326 5` UTR CG6565 + chr2L 13374384 5` UTR CG6565 + chr2L 13374442 5` UTR CG6565 + chr2L_10_13370001 chr2L_13370001 RAL-884 160 chr2L 13405650 13405679 chr2L 13410443 13410476 Doc 11 4794 2.0 3.0 2.5 3.1 4826 chr2L 13405650 exon CG7110 + chr2L 13408063 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_11_13405001 chr2L_13405001 RAL-884 161 chr2L 13449465 13449489 chr2L 13456901 13456925 Quasimodo 5 7436 2.5 3.0 2.8 1.3 7460 chr2L 13449465 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453195 intron CG42784 + chr2L 13456925 intron CG42784 + chr2L_5_13450001 chr2L_13450001 RAL-884 162 chr2L 13481450 13481470 chr2L 13482057 13482077 jockey 6 607 3.5 6.5 5.0 1.0 627 chr2L 13481450 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482077 intron CG42784 + chr2L_6_13480001 chr2L_13480001 RAL-884 163 chr2L 13622151 13622169 chr2L 13622242 13622255 5 87 2.5 3.0 2.8 1.3 104 chr2L 13622151 intron kuz + chr2L 13622203 intron kuz + chr2L 13622255 intron kuz + chr2L_5_13620001 chr2L_13620001 RAL-884 164 chr2L 13761808 13761835 chr2L 13762919 13762945 Doc 9 1107 5.0 3.5 4.2 1.7 1137 chr2L 13761808 intron TM9SF4 + chr2L 13762376 intron TM9SF4 + chr2L 13762945 intron TM9SF4 + chr2L_9_13760001 chr2L_13760001 RAL-884 165 chr2L 13800178 13800207 chr2L 13800282 13800309 5 103 1.5 3.0 2.2 1.6 131 chr2L 13800178 intergenic not near genes chr2L 13800244 intergenic not near genes chr2L 13800309 intergenic not near genes chr2L_5_13800001 chr2L_13800001 RAL-884 166 chr2L 13853086 13853114 chr2L 13862236 13862263 roo 4 9150 2.0 4.5 3.2 1.0 9177 chr2L 13853086 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862263 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-884 167 chr2L 13913588 13913599 chr2L 13913701 13913712 4 113 5.5 1.5 3.5 0.9 124 chr2L 13913588 intergenic not near genes chr2L 13913650 intergenic not near genes chr2L 13913712 intergenic not near genes chr2L_4_13910001 chr2L_13910001 RAL-884 168 chr2L 13958920 13958941 chr2L 13959005 13959025 6 85 3.5 1.5 2.5 1.7 105 chr2L 13958920 intron NimA + chr2L 13958972 intron NimA + chr2L 13959025 intron NimA + chr2L_6_13955001 chr2L_13955001 RAL-884 169 chr2L 14017767 14017793 chr2L 14017859 14017885 5 92 3.0 2.5 2.8 1.3 118 chr2L 14017767 intron bgm + chr2L 14017826 intron bgm + chr2L 14017885 intron bgm + chr2L_5_14015001 chr2L_14015001 RAL-884 170 chr2L 14378649 14378673 chr2L 14378728 14378752 7 77 2.5 0.0 1.2 3.2 103 chr2L 14378649 3` UTR ppk - chr2L 14378700 3` UTR ppk - chr2L 14378752 3` UTR ppk - chr2L_7_14375001 chr2L_14375001 RAL-884 171 chr2L 14436327 14436349 chr2L 14436755 14436773 9 426 1.5 4.5 3.0 2.2 446 chr2L 14436327 intergenic not near genes chr2L 14436550 intergenic not near genes chr2L 14436773 intergenic not near genes chr2L_9_14435001 chr2L_14435001 RAL-884 172 chr2L 14588389 14588419 chr2L 14588536 14588573 6 149 0.5 1.5 1.0 3.0 184 chr2L 14588389 intergenic CG42680 - chr2L 14588481 intergenic CG42680 - chr2L 14588573 intergenic CG42680 - chr2L_6_14585001 chr2L_14585001 RAL-884 173 chr2L 14654491 14654522 chr2L 14654717 14654744 7 225 5.5 1.5 3.5 1.6 253 chr2L 14654491 intron osp - chr2L 14654618 intron osp - chr2L 14654744 intron osp - chr2L_7_14650001 chr2L_14650001 RAL-884 174 chr2L 14678357 14678382 chr2L 14678465 14678473 5 103 3.5 4.0 3.8 1.0 116 chr2L 14678357 intron osp - chr2L 14678415 intron osp - chr2L 14678473 intron osp - chr2L_5_14675001 chr2L_14675001 RAL-884 175 chr2L 14840986 14841010 chr2L 14841073 14841087 5 85 0.5 1.0 0.8 2.8 101 chr2L 14840986 3` UTR CR43805 - chr2L 14841036 3` UTR CR43805 - chr2L 14841087 3` UTR CR43805 - chr2L_5_14840001 chr2L_14840001 RAL-884 176 chr2L 14889954 14889988 chr2L 14890378 14890407 jockey 8 421 1.5 4.5 3.0 2.0 453 chr2L 14889954 intergenic not near genes chr2L 14890180 intergenic not near genes chr2L 14890407 intergenic not near genes chr2L_8_14890001 chr2L_14890001 RAL-884 177 chr2L 14923108 14923130 chr2L 14923188 14923210 4 78 2.0 2.5 2.2 1.2 102 chr2L 14923108 intron CG42313 - chr2L 14923159 intron CG42313 - chr2L 14923210 intron CG42313 - chr2L_4_14920001 chr2L_14920001 RAL-884 178 chr2L 15003546 15003570 chr2L 15003630 15003635 6 80 1.0 4.0 2.5 1.7 89 chr2L 15003546 intergenic not near genes chr2L 15003590 intergenic not near genes chr2L 15003635 intergenic not near genes chr2L_6_15000001 chr2L_15000001 RAL-884 179 chr2L 15066577 15066602 chr2L 15066670 15066694 5 92 2.0 0.0 1.0 2.5 117 chr2L 15066577 intron,intron vas +,vig - chr2L 15066636 intron,intron vas +,vig - chr2L 15066694 intron,intron vas +,vig - chr2L_5_15065001 chr2L_15065001 RAL-884 180 chr2L 15139755 15139784 chr2L 15139850 15139855 10 88 3.0 3.5 3.2 2.4 100 chr2L 15139755 intergenic not near genes chr2L 15139805 intergenic not near genes chr2L 15139855 intergenic not near genes chr2L_10_15135001 chr2L_15135001 RAL-884 181 chr2L 15226373 15226394 chr2L 15226446 15226470 4 72 2.5 1.0 1.8 1.4 97 chr2L 15226373 intergenic not near genes chr2L 15226422 intergenic not near genes chr2L 15226470 intergenic not near genes chr2L_4_15225001 chr2L_15225001 RAL-884 182 chr2L 15586414 15586436 chr2L 15593466 15593486 297 7 7051 0.5 2.0 1.2 3.2 7072 chr2L 15586414 intergenic not near genes chr2L 15589950 intergenic not near genes chr2L 15593486 intergenic not near genes chr2L_7_15585001 chr2L_15585001 RAL-884 183 chr2L 15933591 15933605 chr2L 15936113 15936143 6 2530 12.0 10.5 11.2 0.5 2552 chr2L 15933591 intron beat-Ib - chr2L 15934867 intron beat-Ib - chr2L 15936143 intron beat-Ib - chr2L_6_15930001 chr2L_15930001 RAL-884 184 chr2L 15996581 15996609 chr2L 15996700 15996723 7 120 4.5 1.0 2.8 1.8 142 chr2L 15996581 intergenic not near genes chr2L 15996652 intergenic not near genes chr2L 15996723 intergenic not near genes chr2L_7_15995001 chr2L_15995001 RAL-884 185 chr2L 10176023 10176023 chr2L 16071771 16071771 4 5895748 21.0 15.0 18.0 0.2 5895748 chr2L 10176023 intron CG44153 - chr2L 13123897 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_4_13120001 chr2L_13120001 RAL-884 186 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 7 145889 17.5 27.0 22.2 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-884 187 chr2L 16129115 16129136 chr2L 16129218 16129232 4 99 7.0 1.0 4.0 0.8 117 chr2L 16129115 intergenic not near genes chr2L 16129174 intergenic not near genes chr2L 16129232 intergenic not near genes chr2L_4_16125001 chr2L_16125001 RAL-884 188 chr2L 16141164 16141194 chr2L 16146371 16146378 copia 5 5201 1.5 1.0 1.2 2.3 5214 chr2L 16141164 intergenic not near genes chr2L 16143771 intergenic not near genes chr2L 16146378 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-884 189 chr2L 16153744 16153751 chr2L 16160812 16160818 297 5 7067 4.5 2.0 3.2 1.2 7074 chr2L 16153744 intergenic not near genes chr2L 16157281 intergenic not near genes chr2L 16160818 intergenic not near genes chr2L_5_16155001 chr2L_16155001 RAL-884 190 chr2L 16208556 16208559 chr2L 16208615 16208648 5 81 2.0 4.0 3.0 1.2 92 chr2L 16208556 intergenic not near genes chr2L 16208602 intergenic not near genes chr2L 16208648 intergenic not near genes chr2L_5_16205001 chr2L_16205001 RAL-884 191 chr2L 9084336 9084340 chr2L 16217660 16217660 6 7133321 13.5 27.0 20.2 0.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-884 192 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 9 145889 17.5 27.0 22.2 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-884 193 chr2L 16280252 16280283 chr2L 16281420 16281435 1360 7 1165 4.0 5.5 4.8 1.2 1183 chr2L 16280252 intron crp - chr2L 16280844 intron crp - chr2L 16281435 intron crp - chr2L_7_16280001 chr2L_16280001 RAL-884 194 chr2L 16384497 16384524 chr2L 16384586 16384599 9 85 4.0 6.0 5.0 1.5 102 chr2L 16384497 intergenic not near genes chr2L 16384548 intergenic not near genes chr2L 16384599 intergenic not near genes chr2L_9_16380001 chr2L_16380001 RAL-884 195 chr2L 16414133 16414155 chr2L 16414209 16414231 6 73 1.5 2.0 1.8 2.1 98 chr2L 16414133 intron CG5888 - chr2L 16414182 intron CG5888 - chr2L 16414231 intron CG5888 - chr2L_6_16410001 chr2L_16410001 RAL-884 196 chr2L 16616585 16616615 chr2L 16616667 16616680 6 79 2.5 6.5 4.5 1.1 95 chr2L 16616585 intron CG42389 + chr2L 16616632 intron CG42389 + chr2L 16616680 intron CG42389 + chr2L_6_16615001 chr2L_16615001 RAL-884 197 chr2L 16694159 16694163 chr2L 16694213 16694223 4 72 4.0 1.5 2.8 1.1 64 chr2L 16694159 intron grp + chr2L 16694191 intron grp + chr2L 16694223 intron grp + chr2L_4_16690001 chr2L_16690001 RAL-884 198 chr2L 16952690 16952712 chr2L 16952799 16952820 4 109 3.5 2.5 3.0 1.0 130 chr2L 16952690 intergenic not near genes chr2L 16952755 intergenic not near genes chr2L 16952820 intergenic not near genes chr2L_4_16950001 chr2L_16950001 RAL-884 199 chr2L 17005415 17005436 chr2L 17005512 17005532 6 94 2.0 8.0 5.0 1.0 117 chr2L 17005415 intergenic not near genes chr2L 17005474 intergenic not near genes chr2L 17005532 intergenic not near genes chr2L_6_17005001 chr2L_17005001 RAL-884 200 chr2L 17053283 17053309 chr2L 17053690 17053719 7 409 1.0 3.0 2.0 2.3 436 chr2L 17053283 intergenic not near genes chr2L 17053501 intergenic not near genes chr2L 17053719 intergenic not near genes chr2L_7_17050001 chr2L_17050001 RAL-884 201 chr2L 17129842 17129872 chr2L 17129947 17129976 7 102 5.5 3.0 4.2 1.3 134 chr2L 17129842 intergenic not near genes chr2L 17129909 intergenic not near genes chr2L 17129976 intergenic not near genes chr2L_7_17125001 chr2L_17125001 RAL-884 202 chr2L 17273195 17273214 chr2L 17277978 17277997 F-element 4 4783 8.5 4.5 6.5 0.5 4802 chr2L 17273195 intergenic not near genes chr2L 17275596 intergenic not near genes chr2L 17277997 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-884 203 chr2L 17287333 17287352 chr2L 17287580 17287599 4 246 2.0 1.5 1.8 1.4 266 chr2L 17287333 exon CG15140 + chr2L 17287466 3` UTR CG15140 + chr2L 17287599 3` UTR CG15140 + chr2L_4_17285001 chr2L_17285001 RAL-884 204 chr2L 17360026 17360049 chr2L 17360204 17360227 5 173 0.5 0.0 0.2 4.2 201 chr2L 17360026 intergenic not near genes chr2L 17360126 intergenic not near genes chr2L 17360227 intergenic not near genes chr2L_5_17360001 chr2L_17360001 RAL-884 205 chr2L 17425174 17425205 chr2L 17425520 17425541 12 337 5.5 2.0 3.8 2.5 367 chr2L 17425174 intron Dif - chr2L 17425358 intron Dif - chr2L 17425541 intron Dif - chr2L_12_17425001 chr2L_17425001 RAL-884 206 chr2L 17444189 17444211 chr2L 17444299 17444322 4 110 2.5 3.0 2.8 1.1 133 chr2L 17444189 intron dl - chr2L 17444256 intron dl - chr2L 17444322 intron dl - chr2L_4_17440001 chr2L_17440001 RAL-884 207 chr2L 17543603 17543626 chr2L 17543691 17543702 4 88 1.0 1.5 1.2 1.8 99 chr2L 17543603 intergenic not near genes chr2L 17543652 intergenic not near genes chr2L 17543702 intergenic not near genes chr2L_4_17540001 chr2L_17540001 RAL-884 208 chr2L 17606047 17606057 chr2L 17606252 17606257 5 203 3.0 2.0 2.5 1.4 210 chr2L 17606047 intergenic CR44412 - chr2L 17606152 intergenic CR44412 - chr2L 17606257 intergenic CR44412 - chr2L_5_17605001 chr2L_17605001 RAL-884 209 chr2L 17741031 17741050 chr2L 17741105 17741130 6 80 3.0 1.0 2.0 2.0 99 chr2L 17741031 intron CadN - chr2L 17741080 intron CadN - chr2L 17741130 intron CadN - chr2L_6_17740001 chr2L_17740001 RAL-884 210 chr2L 17819929 17819943 chr2L 17825132 17825146 copia 4 5202 2.0 6.5 4.2 0.8 5217 chr2L 17819929 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825146 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-884 211 chr2L 17880594 17880601 chr2L 17880706 17880713 4 111 0.5 2.0 1.2 1.8 119 chr2L 17880594 intergenic not near genes chr2L 17880654 intergenic not near genes chr2L 17880713 intergenic not near genes chr2L_4_17880001 chr2L_17880001 RAL-884 212 chr2L 17911963 17911980 chr2L 17914141 17914152 pogo 4 2176 4.5 2.5 3.5 0.9 2189 chr2L 17911963 intergenic not near genes chr2L 17913058 intergenic not near genes chr2L 17914152 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-884 213 chr2L 17951953 17951972 chr2L 17953419 17953422 hobo 4 1462 0.5 1.0 0.8 2.2 1469 chr2L 17951953 intergenic CR44398 -,CR44397 - chr2L 17952688 intergenic not near genes chr2L 17953422 intergenic not near genes chr2L_4_17950001 chr2L_17950001 RAL-884 214 chr2L 18051877 18051899 chr2L 18061023 18061046 roo 6 9146 4.0 1.0 2.5 1.7 9169 chr2L 18051877 intron rdo + chr2L 18056462 intron rdo + chr2L 18061046 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-884 215 chr2L 18079822 18079841 chr2L 18079908 18079927 4 86 2.0 1.0 1.5 1.6 105 chr2L 18079822 intron Arr1 + chr2L 18079874 intron Arr1 + chr2L 18079927 intron Arr1 + chr2L_4_18075001 chr2L_18075001 RAL-884 216 chr2L 18111242 18111272 chr2L 18111332 18111335 8 85 3.0 3.0 3.0 2.0 93 chr2L 18111242 intergenic not near genes chr2L 18111288 intergenic not near genes chr2L 18111335 intergenic not near genes chr2L_8_18110001 chr2L_18110001 RAL-884 217 chr2L 18154327 18154340 chr2L 18154408 18154427 5 84 4.0 3.5 3.8 1.0 100 chr2L 18154327 exon CG17681 + chr2L 18154377 exon CG17681 + chr2L 18154427 3` UTR CG17681 + chr2L_5_18150001 chr2L_18150001 RAL-884 218 chr2L 18254814 18254828 chr2L 18254914 18254928 4 100 2.5 0.5 1.5 1.6 114 chr2L 18254814 intron CG42750 - chr2L 18254871 intron CG42750 - chr2L 18254928 intron CG42750 - chr2L_4_18250001 chr2L_18250001 RAL-884 219 chr2L 18274042 18274072 chr2L 18274128 18274157 7 86 1.0 3.0 2.0 2.3 115 chr2L 18274042 intron CG42750 - chr2L 18274100 intron CG42750 - chr2L 18274157 intron CG42750 - chr2L_7_18270001 chr2L_18270001 RAL-884 220 chr2L 18334613 18334645 chr2L 18334698 18334710 9 80 2.5 2.5 2.5 2.6 97 chr2L 18334613 intron Fas3 + chr2L 18334662 intron Fas3 + chr2L 18334710 intron Fas3 + chr2L_9_18330001 chr2L_18330001 RAL-884 221 chr2L 18408022 18408052 chr2L 18412806 18412836 Doc 6 4783 4.5 0.5 2.5 1.7 4814 chr2L 18408022 intergenic not near genes chr2L 18410429 intergenic not near genes chr2L 18412836 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-884 222 chr2L 18629370 18629386 chr2L 18629455 18629470 4 85 3.0 0.0 1.5 1.6 100 chr2L 18629370 intron MESR3 + chr2L 18629420 intron MESR3 + chr2L 18629470 intron MESR3 + chr2L_4_18625001 chr2L_18625001 RAL-884 223 chr2L 18812556 18812589 chr2L 18812819 18812849 10 262 3.0 2.5 2.8 2.6 293 chr2L 18812556 intergenic CG17325 +,CG42305 + chr2L 18812702 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812849 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_10_18810001 chr2L_18810001 RAL-884 224 chr2L 18903099 18903120 chr2L 18903196 18903201 6 93 2.0 3.5 2.8 1.6 102 chr2L 18903099 intergenic not near genes chr2L 18903150 intergenic not near genes chr2L 18903201 intergenic not near genes chr2L_6_18900001 chr2L_18900001 RAL-884 225 chr2L 18990310 18990343 chr2L 18990421 18990454 12 109 1.0 1.0 1.0 6.0 144 chr2L 18990310 intergenic CG15170 - chr2L 18990382 intergenic CG15170 - chr2L 18990454 intergenic CG15170 - chr2L_12_18990001 chr2L_18990001 RAL-884 226 chr2L 19142485 19142514 chr2L 19142574 19142584 5 86 7.0 4.5 5.8 0.7 99 chr2L 19142485 intron brat + chr2L 19142534 intron brat + chr2L 19142584 intron brat + chr2L_5_19140001 chr2L_19140001 RAL-884 227 chr2L 19147272 19147293 chr2L 19147387 19147398 7 110 8.5 0.0 4.2 1.3 126 chr2L 19147272 intron brat + chr2L 19147335 intron brat + chr2L 19147398 intron brat + chr2L_7_19145001 chr2L_19145001 RAL-884 228 chr2L 19189968 19189987 chr2L 19190122 19190122 6 151 3.0 2.5 2.8 1.6 154 chr2L 19189968 intergenic pigeon +,drl + chr2L 19190045 intergenic pigeon +,drl + chr2L 19190122 intergenic pigeon +,drl + chr2L_6_19190001 chr2L_19190001 RAL-884 229 chr2L 19237310 19237337 chr2L 19237410 19237417 7 97 0.5 4.5 2.5 2.0 107 chr2L 19237310 intergenic not near genes chr2L 19237364 intergenic not near genes chr2L 19237417 intergenic not near genes chr2L_7_19235001 chr2L_19235001 RAL-884 230 chr2L 19357550 19357567 chr2L 19357635 19357656 9 89 3.5 3.0 3.2 2.1 106 chr2L 19357550 intron dnt - chr2L 19357603 intron dnt - chr2L 19357656 intron dnt - chr2L_9_19355001 chr2L_19355001 RAL-884 231 chr2L 19407728 19407739 chr2L 19407918 19407935 5 195 5.0 3.0 4.0 1.0 207 chr2L 19407728 intron Pax - chr2L 19407832 intron Pax - chr2L 19407935 intron Pax - chr2L_5_19405001 chr2L_19405001 RAL-884 232 chr2L 19441077 19441089 chr2L 19441144 19441166 5 75 3.5 5.5 4.5 0.9 89 chr2L 19441077 intron CG10237 - chr2L 19441122 intron CG10237 - chr2L 19441166 5` UTR CG10237 - chr2L_5_19440001 chr2L_19440001 RAL-884 233 chr2L 19559406 19559413 chr2L 19559472 19559489 6 73 0.0 1.5 0.8 3.3 83 chr2L 19559406 exon Tep5 + chr2L 19559448 exon Tep5 + chr2L 19559489 exon Tep5 + chr2L_6_19555001 chr2L_19555001 RAL-884 234 chr2L 19560837 19560854 chr2L 19560917 19560934 5 79 4.0 2.5 3.2 1.2 97 chr2L 19560837 intron Tep5 + chr2L 19560886 exon Tep5 + chr2L 19560934 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-884 235 chr2L 19561346 19561364 chr2L 19561485 19561505 5 140 2.5 4.0 3.2 1.2 159 chr2L 19561346 exon Tep5 + chr2L 19561426 exon Tep5 + chr2L 19561505 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-884 236 chr2L 19601594 19601599 chr2L 19601648 19601654 5 59 0.5 2.5 1.5 2.0 60 chr2L 19601594 intron,intron Lar +,CR44978 - chr2L 19601624 intron,intron Lar +,CR44978 - chr2L 19601654 intron,intron Lar +,CR44978 - chr2L_5_19600001 chr2L_19600001 RAL-884 237 chr2L 19620109 19620129 chr2L 19621078 19621116 jockey 4 978 2.5 3.0 2.8 1.1 1007 chr2L 19620109 intron Lar + chr2L 19620612 intron Lar + chr2L 19621116 intron Lar + chr2L_4_19620001 chr2L_19620001 RAL-884 238 chr2L 19652574 19652589 chr2L 19674008 19674023 opus 5 21434 4.5 4.5 4.5 0.9 21449 chr2L 19652574 intron Lar + chr2L 19663298 intron Lar + chr2L 19674023 intron Lar + chr2L_5_19660001 chr2L_19660001 RAL-884 239 chr2L 19689066 19689075 chr2L 19689169 19689179 4 104 4.0 4.5 4.2 0.8 113 chr2L 19689066 intron Lar + chr2L 19689122 intron Lar + chr2L 19689179 intron Lar + chr2L_4_19685001 chr2L_19685001 RAL-884 240 chr2L 19697135 19697169 chr2L 19697228 19697261 12 89 2.5 4.0 3.2 2.9 126 chr2L 19697135 intron Lar + chr2L 19697198 intron Lar + chr2L 19697261 intron Lar + chr2L_12_19695001 chr2L_19695001 RAL-884 241 chr2L 19703539 19703565 chr2L 19712670 19712700 roo 10 9131 5.0 2.0 3.5 2.2 9161 chr2L 19703539 intron Lar + chr2L 19708120 intron Lar + chr2L 19712700 intron Lar + chr2L_10_19705001 chr2L_19705001 RAL-884 242 chr2L 19737362 19737371 chr2L 19740829 19740838 1360 4 3466 7.5 5.0 6.2 0.6 3476 chr2L 19737362 intergenic Nf-YB + chr2L 19739100 intergenic not near genes chr2L 19740838 intergenic not near genes chr2L_4_19735001 chr2L_19735001 RAL-884 243 chr2L 19737374 19737379 chr2L 19740828 19740848 1360 5 3462 6.5 5.0 5.8 0.7 3474 chr2L 19737374 intergenic Nf-YB + chr2L 19739111 intergenic not near genes chr2L 19740848 intergenic not near genes chr2L_5_19735001 chr2L_19735001 RAL-884 244 chr2L 19762812 19762837 chr2L 19763054 19763079 pogo 7 241 2.5 2.0 2.2 2.2 267 chr2L 19762812 5` UTR fbp - chr2L 19762946 intron fbp - chr2L 19763079 intron fbp - chr2L_7_19760001 chr2L_19760001 RAL-884 245 chr2L 19773162 19773186 chr2L 19773249 19773268 4 85 5.5 1.5 3.5 0.9 106 chr2L 19773162 intergenic not near genes chr2L 19773215 intergenic not near genes chr2L 19773268 intergenic not near genes chr2L_4_19770001 chr2L_19770001 RAL-884 246 chr2L 20236513 20236540 chr2L 20236585 20236616 6 75 0.5 1.5 1.0 3.0 103 chr2L 20236513 intergenic not near genes chr2L 20236564 intergenic not near genes chr2L 20236616 intergenic not near genes chr2L_6_20235001 chr2L_20235001 RAL-884 247 chr2L 20272123 20272129 chr2L 20282822 20282839 copia 4 10707 2.5 3.0 2.8 1.1 10716 chr2L 20272123 intergenic not near genes chr2L 20277481 intergenic not near genes chr2L 20282839 intergenic not near genes chr2L_4_20275001 chr2L_20275001 RAL-884 248 chr2L 20296518 20296539 chr2L 20296598 20296620 4 80 1.0 3.5 2.2 1.2 102 chr2L 20296518 intergenic CR43414 - chr2L 20296569 intergenic CR43414 - chr2L 20296620 intergenic CR43414 - chr2L_4_20295001 chr2L_20295001 RAL-884 249 chr2L 20303167 20303187 chr2L 20310635 20310655 blood 5 7465 1.5 1.0 1.2 2.3 7488 chr2L 20303167 intergenic not near genes chr2L 20306911 intergenic not near genes chr2L 20310655 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-884 250 chr2L 20368119 20368146 chr2L 20368263 20368295 7 147 3.5 3.0 3.2 1.7 176 chr2L 20368119 intergenic not near genes chr2L 20368207 intergenic not near genes chr2L 20368295 intergenic not near genes chr2L_7_20365001 chr2L_20365001 RAL-884 251 chr2L 20376037 20376037 chr2L 20376969 20376982 6 933 22.0 11.5 16.8 0.3 945 chr2L 20376037 intergenic not near genes chr2L 20376510 intergenic CG16798 - chr2L 20376982 3` UTR CG16798 - chr2L_6_20375001 chr2L_20375001 RAL-884 252 chr2L 20498691 20498708 chr2L 20498790 20498803 4 97 1.0 7.5 4.2 0.8 112 chr2L 20498691 intergenic not near genes chr2L 20498747 intergenic not near genes chr2L 20498803 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-884 253 chr2L 20568667 20568687 chr2L 20569057 20569077 X-element 4 390 2.5 4.0 3.2 1.0 410 chr2L 20568667 intron CR45347 + chr2L 20568872 intron CR45347 + chr2L 20569077 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-884 254 chr2L 20669959 20669992 chr2L 20670039 20670072 5 69 1.0 3.0 2.0 1.7 113 chr2L 20669959 intron CG31678 - chr2L 20670016 intron CG31678 - chr2L 20670072 intron CG31678 - chr2L_5_20670001 chr2L_20670001 RAL-884 255 chr2L 20778233 20778266 chr2L 20778316 20778347 13 81 3.5 5.0 4.2 2.5 114 chr2L 20778233 intron cad + chr2L 20778290 intron cad + chr2L 20778347 intron cad + chr2L_13_20775001 chr2L_20775001 RAL-884 256 chr2L 20840030 20840058 chr2L 20840238 20840270 9 209 2.5 3.0 2.8 2.4 240 chr2L 20840030 intergenic not near genes chr2L 20840150 intergenic not near genes chr2L 20840270 intergenic CG31676 + chr2L_9_20840001 chr2L_20840001 RAL-884 257 chr2L 20901477 20901486 chr2L 20902622 20902649 1360 6 1157 1.0 4.5 2.8 1.6 1172 chr2L 20901477 intron,intron CG43739 -,sky - chr2L 20902063 intron,intron CG43739 -,sky - chr2L 20902649 intron,intron CG43739 -,sky - chr2L_6_20900001 chr2L_20900001 RAL-884 258 chr2L 20906824 20906853 chr2L 20907007 20907011 9 178 2.0 2.5 2.2 2.8 187 chr2L 20906824 intron,intron CG43739 -,sky - chr2L 20906918 intron,intron CG43739 -,sky - chr2L 20907011 intron,intron CG43739 -,sky - chr2L_9_20905001 chr2L_20905001 RAL-884 259 chr2L 20946946 20946953 chr2L 20947033 20947040 5 87 3.5 2.5 3.0 1.2 94 chr2L 20946946 intergenic CR44606 - chr2L 20946993 intergenic CR44606 - chr2L 20947040 intergenic CR44606 - chr2L_5_20945001 chr2L_20945001 RAL-884 260 chr2L 20976656 20976678 chr2L 20981471 20981492 X-element 5 4815 1.5 4.5 3.0 1.2 4836 chr2L 20976656 intron CG42238 - chr2L 20979074 intron CG42238 - chr2L 20981492 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-884 261 chr2L 20984752 20984764 chr2L 20984829 20984835 4 82 4.0 3.0 3.5 0.9 83 chr2L 20984752 intron CG42238 - chr2L 20984794 intron CG42238 - chr2L 20984835 intron CG42238 - chr2L_4_20980001 chr2L_20980001 RAL-884 262 chr2L 20986905 20986919 chr2L 20987242 20987256 5 336 3.5 2.0 2.8 1.3 351 chr2L 20986905 intron CG42238 - chr2L 20987080 intron CG42238 - chr2L 20987256 intron CG42238 - chr2L_5_20985001 chr2L_20985001 RAL-884 263 chr2L 20986923 20986935 chr2L 20987240 20987245 6 323 2.5 2.0 2.2 1.9 322 chr2L 20986923 intron CG42238 - chr2L 20987084 intron CG42238 - chr2L 20987245 intron CG42238 - chr2L_6_20985001 chr2L_20985001 RAL-884 264 chr2L 20991039 20991067 chr2L 20991116 20991145 6 77 2.5 2.0 2.2 1.9 106 chr2L 20991039 intron CG42238 - chr2L 20991092 intron CG42238 - chr2L 20991145 intron CG42238 - chr2L_6_20990001 chr2L_20990001 RAL-884 265 chr2L 21041146 21041163 chr2L 21049401 21049424 Tirant 4 8259 2.0 1.5 1.8 1.4 8278 chr2L 21041146 intron CG42238 - chr2L 21045285 intron CG42238 - chr2L 21049424 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-884 266 chr2L 21074939 21074951 chr2L 21075007 21075029 4 74 1.0 0.5 0.8 2.2 90 chr2L 21074939 intergenic tadr + chr2L 21074984 intergenic tadr + chr2L 21075029 intergenic tadr + chr2L_4_21070001 chr2L_21070001 RAL-884 267 chr2L 21113683 21113716 chr2L 21113776 21113797 11 84 4.5 1.5 3.0 2.8 114 chr2L 21113683 intron Nhe2 + chr2L 21113740 intron Nhe2 + chr2L 21113797 intron Nhe2 + chr2L_11_21110001 chr2L_21110001 RAL-884 268 chr2L 21286605 21286627 chr2L 21286683 21286705 5 78 3.5 2.5 3.0 1.2 100 chr2L 21286605 exon Mio - chr2L 21286655 intron Mio - chr2L 21286705 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-884 269 chr2L 21819336 21819339 chr2L 21819422 21819427 4 87 4.5 4.0 4.2 0.8 91 chr2L 21819336 intergenic CR44786 + chr2L 21819382 intergenic CR44786 + chr2L 21819427 intergenic CR44786 + chr2L_4_21815001 chr2L_21815001 RAL-884 270 chr2L 21898842 21898874 chr2L 21898970 21899002 7 125 3.5 1.5 2.5 2.0 160 chr2L 21898842 intergenic not near genes chr2L 21898922 intergenic not near genes chr2L 21899002 intergenic not near genes chr2L_7_21895001 chr2L_21895001 RAL-884 271 chr2L 21953796 21953823 chr2L 21954697 21954724 6 902 19.0 22.0 20.5 0.3 928 chr2L 21953796 intergenic not near genes chr2L 21954260 intergenic not near genes chr2L 21954724 intergenic not near genes chr2L_6_21950001 chr2L_21950001 RAL-884 272 chr2L 21981692 21981699 chr2L 21990855 21990856 roo 4 9162 4.0 6.5 5.2 0.6 9164 chr2L 21981692 exon CG2528 - chr2L 21986274 intron CG2528 - chr2L 21990856 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-884 273 chr2L 22005767 22005797 chr2L 22005856 22005880 7 83 1.0 1.5 1.2 3.2 113 chr2L 22005767 intergenic not near genes chr2L 22005824 intergenic not near genes chr2L 22005880 intergenic not near genes chr2L_7_22005001 chr2L_22005001 RAL-884 274 chr2L 22548924 22548929 chr2L 22550148 22550154 1360 4 1225 0.5 4.0 2.2 1.2 1230 chr2L 22548924 intergenic CG17490 + chr2L 22549539 intergenic not near genes chr2L 22550154 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-884 275 chr2L 22581971 22581999 chr2L 22583760 22583788 S-element 5 1783 0.5 0.5 0.5 3.3 1817 chr2L 22581971 intron CG17494 + chr2L 22582880 intron CG17494 + chr2L 22583788 intron CG17494 + chr2L_5_22580001 chr2L_22580001 RAL-884 276 chr2L 22679801 22679814 chr2L 22684573 22684585 F-element 5 4771 3.0 4.5 3.8 1.0 4784 chr2L 22679801 intron CG40006 - chr2L 22682193 intron CG40006 - chr2L 22684585 intron CG40006 - chr2L_5_22680001 chr2L_22680001 RAL-884 277 chr2L 22679820 22679831 chr2L 22684566 22684595 F-element 4 4758 3.0 3.0 3.0 1.0 4775 chr2L 22679820 intron CG40006 - chr2L 22682208 intron CG40006 - chr2L 22684595 intron CG40006 - chr2L_4_22680001 chr2L_22680001 RAL-884 278 chr2R 529323 529355 chr2R 537948 537962 Max-element 5 8616 2.0 3.0 2.5 1.4 8639 chr2R 529323 intron CG40378 + chr2R 533642 intron CG40378 + chr2R 537962 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-884 279 chr2R 1082371 1082385 chr2R 1087126 1087152 Doc 6 4760 1.0 3.0 2.0 2.0 4781 chr2R 1082371 intron rl + chr2R 1084762 intron rl + chr2R 1087152 intron rl + chr2R_6_1080001 chr2R_1080001 RAL-884 280 chr2R 2498983 2499002 chr2R 2508130 2508149 roo 5 9145 4.0 1.5 2.8 1.3 9166 chr2R 2498983 intron MFS17 - chr2R 2503566 intron MFS17 - chr2R 2508149 intron MFS17 - chr2R_5_2500001 chr2R_2500001 RAL-884 281 chr2R 2591544 2591557 chr2R 2594218 2594233 roo 4 2674 16.0 12.0 14.0 0.3 2689 chr2R 2591544 intergenic not near genes chr2R 2592888 intergenic not near genes chr2R 2594233 intergenic not near genes chr2R_4_2590001 chr2R_2590001 RAL-884 282 chr2R 3144091 3144107 chr2R 3393369 3393385 Doc 5 249277 9.0 14.0 11.5 0.4 249294 chr2R 3144091 intron CG42596 + chr2R 3268738 intergenic not near genes chr2R 3393385 intergenic not near genes chr2R_5_3265001 chr2R_3265001 RAL-884 283 chr2R 3293753 3293773 chr2R 3293830 3293850 4 76 0.5 1.5 1.0 2.0 97 chr2R 3293753 intergenic not near genes chr2R 3293802 intergenic not near genes chr2R 3293850 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-884 284 chr2R 4604554 4604580 chr2R 4604633 4604646 6 76 3.0 3.0 3.0 1.5 92 chr2R 4604554 intron p120ctn + chr2R 4604600 intron p120ctn + chr2R 4604646 intron p120ctn + chr2R_6_4600001 chr2R_4600001 RAL-884 285 chr2R 4622960 4622988 chr2R 4624110 4624147 1360 9 1153 4.0 3.0 3.5 2.0 1187 chr2R 4622960 intergenic CR44101 - chr2R 4623554 intergenic not near genes chr2R 4624147 intergenic not near genes chr2R_9_4620001 chr2R_4620001 RAL-884 286 chr2R 4624644 4624674 chr2R 4626547 4626563 Bica 15 1902 1.0 1.0 1.0 7.5 1919 chr2R 4624644 intergenic not near genes chr2R 4625604 intergenic not near genes chr2R 4626563 intergenic not near genes chr2R_15_4625001 chr2R_4625001 RAL-884 287 chr2R 4750353 4750370 chr2R 4751498 4751527 1360 6 1151 0.0 2.5 1.2 2.7 1174 chr2R 4750353 intron conu + chr2R 4750940 intron conu + chr2R 4751527 intron conu + chr2R_6_4750001 chr2R_4750001 RAL-884 288 chr2R 4996942 4996977 chr2R 4997018 4997053 10 75 2.5 3.0 2.8 2.6 111 chr2R 4996942 intron Ir41a + chr2R 4996998 intron Ir41a + chr2R 4997053 intron Ir41a + chr2R_10_4995001 chr2R_4995001 RAL-884 289 chr2R 5087185 5087212 chr2R 5087275 5087315 14 96 3.5 4.0 3.8 2.9 130 chr2R 5087185 intergenic not near genes chr2R 5087250 intergenic not near genes chr2R 5087315 intergenic not near genes chr2R_14_5085001 chr2R_5085001 RAL-884 290 chr2R 5209785 5209812 chr2R 5210312 5210338 14 526 3.5 2.0 2.8 3.7 553 chr2R 5209785 intron Nipped-A - chr2R 5210062 intron Nipped-A - chr2R 5210338 intron Nipped-A - chr2R_14_5210001 chr2R_5210001 RAL-884 291 chr2R 5353285 5353308 chr2R 5353363 5353386 4 76 4.0 0.5 2.2 1.2 101 chr2R 5353285 intergenic not near genes chr2R 5353336 intergenic not near genes chr2R 5353386 intergenic not near genes chr2R_4_5350001 chr2R_5350001 RAL-884 292 chr2R 5455773 5455803 chr2R 5455851 5455856 9 74 3.0 2.0 2.5 2.6 83 chr2R 5455773 3` UTR laccase2 + chr2R 5455814 3` UTR laccase2 + chr2R 5455856 3` UTR laccase2 + chr2R_9_5455001 chr2R_5455001 RAL-884 293 chr2R 5472369 5472393 chr2R 5472460 5472465 4 83 2.5 1.0 1.8 1.4 96 chr2R 5472369 intron CG30440 - chr2R 5472417 intron CG30440 - chr2R 5472465 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-884 294 chr2R 5491713 5491746 chr2R 5491853 5491860 12 134 2.0 2.5 2.2 3.8 147 chr2R 5491713 intron CG30440 - chr2R 5491786 intron CG30440 - chr2R 5491860 intron CG30440 - chr2R_12_5490001 chr2R_5490001 RAL-884 295 chr2R 5581397 5581425 chr2R 5627604 5627632 9 46207 0.5 5.5 3.0 2.2 46235 chr2R 5581397 intergenic not near genes chr2R 5604514 exon Fis1 - chr2R 5627632 intergenic not near genes chr2R_9_5600001 chr2R_5600001 RAL-884 296 chr2R 5655897 5655905 chr2R 5655963 5655993 7 82 1.0 1.0 1.0 3.5 96 chr2R 5655897 3` UTR CG1344 + chr2R 5655945 3` UTR CG1344 + chr2R 5655993 3` UTR CG1344 + chr2R_7_5655001 chr2R_5655001 RAL-884 297 chr2R 5790469 5790489 chr2R 5790551 5790574 4 83 0.0 1.0 0.5 2.7 105 chr2R 5790469 intergenic not near genes chr2R 5790522 intergenic not near genes chr2R 5790574 intergenic not near genes chr2R_4_5790001 chr2R_5790001 RAL-884 298 chr2R 5869276 5869309 chr2R 5874351 5874385 flea 8 5070 2.0 2.5 2.2 2.5 5109 chr2R 5869276 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874385 intergenic not near genes chr2R_8_5870001 chr2R_5870001 RAL-884 299 chr2R 5917775 5917795 chr2R 5917850 5917868 8 77 3.0 2.0 2.5 2.3 93 chr2R 5917775 intron CG43366 + chr2R 5917822 intron CG43366 + chr2R 5917868 intron CG43366 + chr2R_8_5915001 chr2R_5915001 RAL-884 300 chr2R 5945806 5945834 chr2R 5945892 5945927 6 86 3.0 3.0 3.0 1.5 121 chr2R 5945806 intergenic not near genes chr2R 5945866 intergenic not near genes chr2R 5945927 intergenic not near genes chr2R_6_5945001 chr2R_5945001 RAL-884 301 chr2R 6033443 6033475 chr2R 6033528 6033531 8 80 1.0 2.5 1.8 2.9 88 chr2R 6033443 intron SCAP - chr2R 6033487 intron SCAP - chr2R 6033531 intron SCAP - chr2R_8_6030001 chr2R_6030001 RAL-884 302 chr2R 6065419 6065443 chr2R 6065498 6065521 4 74 4.5 4.0 4.2 0.8 102 chr2R 6065419 intron CCHa2-R + chr2R 6065470 intron CCHa2-R + chr2R 6065521 intron CCHa2-R + chr2R_4_6065001 chr2R_6065001 RAL-884 303 chr2R 6096726 6096749 chr2R 6101912 6101918 BS 7 5182 3.0 3.5 3.2 1.7 5192 chr2R 6096726 intron EcR - chr2R 6099322 intron EcR - chr2R 6101918 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-884 304 chr2R 6169409 6169423 chr2R 6169488 6169502 5 79 0.0 1.0 0.5 3.3 93 chr2R 6169409 intergenic EcR - chr2R 6169456 intergenic EcR - chr2R 6169502 intergenic EcR - chr2R_5_6165001 chr2R_6165001 RAL-884 305 chr2R 6178684 6178709 chr2R 6178771 6178794 7 85 1.0 1.0 1.0 3.5 110 chr2R 6178684 intergenic not near genes chr2R 6178739 intergenic not near genes chr2R 6178794 intergenic not near genes chr2R_7_6175001 chr2R_6175001 RAL-884 306 chr2R 6194685 6194701 chr2R 6194768 6194783 5 82 3.5 5.0 4.2 1.0 98 chr2R 6194685 intron Ptr - chr2R 6194734 intron Ptr - chr2R 6194783 intron Ptr - chr2R_5_6190001 chr2R_6190001 RAL-884 307 chr2R 6195143 6195173 chr2R 6195219 6195229 11 70 1.0 2.0 1.5 4.4 86 chr2R 6195143 intron Ptr - chr2R 6195186 intron Ptr - chr2R 6195229 intron Ptr - chr2R_11_6195001 chr2R_6195001 RAL-884 308 chr2R 6494531 6494553 chr2R 6499287 6499315 F-element 7 4755 2.0 2.0 2.0 2.3 4784 chr2R 6494531 intergenic not near genes chr2R 6496923 intergenic not near genes chr2R 6499315 intergenic not near genes chr2R_7_6495001 chr2R_6495001 RAL-884 309 chr2R 6500956 6500987 chr2R 6501051 6501082 10 94 4.5 4.0 4.2 1.9 126 chr2R 6500956 intergenic not near genes chr2R 6501019 intergenic not near genes chr2R 6501082 intergenic not near genes chr2R_10_6500001 chr2R_6500001 RAL-884 310 chr2R 6518074 6518101 chr2R 6518158 6518186 5 85 5.5 4.0 4.8 0.9 112 chr2R 6518074 intron jing + chr2R 6518130 intron jing + chr2R 6518186 intron jing + chr2R_5_6515001 chr2R_6515001 RAL-884 311 chr2R 6594049 6594055 chr2R 6594184 6594191 4 136 0.0 3.5 1.8 1.4 142 chr2R 6594049 intron jing + chr2R 6594120 intron jing + chr2R 6594191 intron jing + chr2R_4_6590001 chr2R_6590001 RAL-884 312 chr2R 6597872 6597899 chr2R 6597960 6597987 10 85 5.5 6.0 5.8 1.5 115 chr2R 6597872 intron jing + chr2R 6597930 intron jing + chr2R 6597987 intron jing + chr2R_10_6595001 chr2R_6595001 RAL-884 313 chr2R 6607928 6607948 chr2R 6608030 6608044 4 99 2.0 1.0 1.5 1.6 116 chr2R 6607928 intron jing + chr2R 6607986 intron jing + chr2R 6608044 intron jing + chr2R_4_6605001 chr2R_6605001 RAL-884 314 chr2R 6814862 6814891 chr2R 6819822 6819851 10 4961 26.0 22.0 24.0 0.4 4989 chr2R 6814862 intron koi + chr2R 6817356 3` UTR koi + chr2R 6819851 intergenic not near genes chr2R_10_6815001 chr2R_6815001 RAL-884 315 chr2R 6876228 6876246 chr2R 6876310 6876328 7 82 3.5 3.5 3.5 1.6 100 chr2R 6876228 intron,intron CR44169 +,Spn42Da - chr2R 6876278 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876328 5` UTR,intron CR44169 +,Spn42Da - chr2R_7_6875001 chr2R_6875001 RAL-884 316 chr2R 6964152 6964313 chr2R 6964240 6964390 6 78 0.5 1.0 0.8 3.3 238 chr2R 6964152 intron,intron mim -,CheB42c - chr2R 6964271 intron,intron mim -,CheB42c - chr2R 6964390 intron,intron mim -,CheB42c - chr2R_6_6960001 chr2R_6960001 RAL-884 317 chr2R 7103386 7103413 chr2R 7103455 7103482 4 65 5.5 5.5 5.5 0.6 96 chr2R 7103386 intron esn + chr2R 7103434 intron esn + chr2R 7103482 intron esn + chr2R_4_7100001 chr2R_7100001 RAL-884 318 chr2R 7139944 7139953 chr2R 7141424 7141445 hopper2 5 1486 2.5 8.5 5.5 0.8 1501 chr2R 7139944 intergenic not near genes chr2R 7140694 intergenic not near genes chr2R 7141445 intergenic not near genes chr2R_5_7140001 chr2R_7140001 RAL-884 319 chr2R 7196565 7196596 chr2R 7201340 7201371 F-element 6 4774 1.0 1.0 1.0 3.0 4806 chr2R 7196565 intron pk + chr2R 7198968 intron pk + chr2R 7201371 intron pk + chr2R_6_7195001 chr2R_7195001 RAL-884 320 chr2R 7242591 7242606 chr2R 7242689 7242692 7 95 4.5 0.0 2.2 2.2 101 chr2R 7242591 intergenic Ady43A - chr2R 7242642 intergenic Ady43A - chr2R 7242692 intergenic Ady43A - chr2R_7_7240001 chr2R_7240001 RAL-884 321 chr2R 7272269 7272275 chr2R 7272349 7272357 4 81 0.0 4.0 2.0 1.3 88 chr2R 7272269 intergenic Br140 - chr2R 7272313 3` UTR Br140 - chr2R 7272357 3` UTR Br140 - chr2R_4_7270001 chr2R_7270001 RAL-884 322 chr2R 7417906 7418165 chr2R 7417992 7418244 8 78 4.0 2.0 3.0 2.0 338 chr2R 7417906 intergenic not near genes chr2R 7418075 intergenic not near genes chr2R 7418244 intergenic not near genes chr2R_8_7415001 chr2R_7415001 RAL-884 323 chr2R 7551691 7551717 chr2R 7551778 7551804 8 87 3.5 5.0 4.2 1.5 113 chr2R 7551691 intron Corin + chr2R 7551748 intron Corin + chr2R 7551804 intron Corin + chr2R_8_7550001 chr2R_7550001 RAL-884 324 chr2R 7608411 7608437 chr2R 7613608 7613616 I-element 4 5194 1.0 0.5 0.8 2.2 5205 chr2R 7608411 intron CG1358 - chr2R 7611014 intron CG1358 - chr2R 7613616 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-884 325 chr2R 7815672 7815696 chr2R 7822140 7822158 Burdock 4 6466 2.0 2.0 2.0 1.3 6486 chr2R 7815672 intergenic CG1882 + chr2R 7818915 intergenic not near genes chr2R 7822158 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-884 326 chr2R 7851266 7851292 chr2R 7851344 7851353 9 80 1.0 3.5 2.2 2.8 87 chr2R 7851266 intron Dgk - chr2R 7851310 intron Dgk - chr2R 7851353 intron Dgk - chr2R_9_7850001 chr2R_7850001 RAL-884 327 chr2R 7884197 7884229 chr2R 7884281 7884289 7 79 1.5 2.5 2.0 2.3 92 chr2R 7884197 intron Dgk - chr2R 7884243 intron Dgk - chr2R 7884289 intron Dgk - chr2R_7_7880001 chr2R_7880001 RAL-884 328 chr2R 7901695 7901700 chr2R 7901853 7901866 4 163 5.5 2.0 3.8 0.8 171 chr2R 7901695 intron CG30377 + chr2R 7901780 intron CG30377 + chr2R 7901866 intron CG30377 + chr2R_4_7900001 chr2R_7900001 RAL-884 329 chr2R 8036270 8036281 chr2R 8036336 8036348 4 74 3.5 2.5 3.0 1.0 78 chr2R 8036270 intron Optix + chr2R 8036309 intron Optix + chr2R 8036348 intron Optix + chr2R_4_8035001 chr2R_8035001 RAL-884 330 chr2R 8067077 8067096 chr2R 8067161 8067180 7 83 0.5 3.0 1.8 2.5 103 chr2R 8067077 intron CG17977 - chr2R 8067128 exon CG17977 - chr2R 8067180 exon CG17977 - chr2R_7_8065001 chr2R_8065001 RAL-884 331 chr2R 8076677 8076711 chr2R 8076757 8076790 6 80 3.5 0.5 2.0 2.0 113 chr2R 8076677 intron lig + chr2R 8076734 intron lig + chr2R 8076790 intron lig + chr2R_6_8075001 chr2R_8075001 RAL-884 332 chr2R 8089259 8089280 chr2R 8089339 8089348 4 69 2.0 3.5 2.8 1.1 89 chr2R 8089259 3` UTR sut2 + chr2R 8089304 intergenic sut2 +,sut3 + chr2R 8089348 intergenic sut2 +,sut3 + chr2R_4_8085001 chr2R_8085001 RAL-884 333 chr2R 8209062 8209078 chr2R 8209146 8209162 5 83 3.0 2.5 2.8 1.3 100 chr2R 8209062 intron LRP1 + chr2R 8209112 intron LRP1 + chr2R 8209162 intron LRP1 + chr2R_5_8205001 chr2R_8205001 RAL-884 334 chr2R 8231697 8231724 chr2R 8231773 8231802 11 78 3.0 0.0 1.5 4.4 105 chr2R 8231697 intron dpn - chr2R 8231750 intron dpn - chr2R 8231802 intron dpn - chr2R_11_8230001 chr2R_8230001 RAL-884 335 chr2R 8270373 8270401 chr2R 8270451 8270474 14 75 2.5 1.5 2.0 4.7 101 chr2R 8270373 intergenic not near genes chr2R 8270424 intergenic not near genes chr2R 8270474 intergenic not near genes chr2R_14_8270001 chr2R_8270001 RAL-884 336 chr2R 8330867 8330887 chr2R 8331353 8331373 roo 8 485 1.5 3.5 2.5 2.3 506 chr2R 8330867 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331373 intron pdm3 + chr2R_8_8330001 chr2R_8330001 RAL-884 337 chr2R 8379801 8379816 chr2R 8379881 8379912 5 90 7.5 2.5 5.0 0.8 111 chr2R 8379801 intron pdm3 + chr2R 8379856 intron pdm3 + chr2R 8379912 intron pdm3 + chr2R_5_8375001 chr2R_8375001 RAL-884 338 chr2R 8398214 8398244 chr2R 8402991 8403016 Doc 7 4769 2.0 3.0 2.5 2.0 4802 chr2R 8398214 intron CG2121 - chr2R 8400615 intron CG2121 - chr2R 8403016 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-884 339 chr2R 8524067 8524104 chr2R 8524148 8524183 8 80 2.0 4.0 3.0 2.0 116 chr2R 8524067 intron mtt - chr2R 8524125 intron mtt - chr2R 8524183 intron mtt - chr2R_8_8520001 chr2R_8520001 RAL-884 340 chr2R 8722763 8722776 chr2R 8723004 8723015 pogo 8 239 5.0 0.5 2.8 2.1 252 chr2R 8722763 intron CG14767 - chr2R 8722889 intron CG14767 - chr2R 8723015 intron CG14767 - chr2R_8_8720001 chr2R_8720001 RAL-884 341 chr2R 8722777 8722791 chr2R 8723003 8723022 pogo 7 232 4.0 0.5 2.2 2.2 245 chr2R 8722777 intron CG14767 - chr2R 8722900 intron CG14767 - chr2R 8723022 intron CG14767 - chr2R_7_8720001 chr2R_8720001 RAL-884 342 chr2R 8759761 8759790 chr2R 8759840 8759869 6 75 2.5 4.0 3.2 1.4 108 chr2R 8759761 intergenic CG8740 + chr2R 8759815 intergenic CG8740 + chr2R 8759869 intergenic CG8740 + chr2R_6_8755001 chr2R_8755001 RAL-884 343 chr2R 8789475 8789493 chr2R 8789548 8789582 4 75 4.0 2.5 3.2 1.0 107 chr2R 8789475 intergenic not near genes chr2R 8789528 intergenic not near genes chr2R 8789582 intergenic not near genes chr2R_4_8785001 chr2R_8785001 RAL-884 344 chr2R 8833433 8833442 chr2R 8833507 8833524 5 80 2.5 2.0 2.2 1.6 91 chr2R 8833433 intron sns + chr2R 8833478 intron sns + chr2R 8833524 intron sns + chr2R_5_8830001 chr2R_8830001 RAL-884 345 chr2R 8967425 8967685 chr2R 8967567 8967802 4 138 8.0 1.0 4.5 0.7 377 chr2R 8967425 intron CG8216 - chr2R 8967614 intron CG8216 - chr2R 8967802 intron CG8216 - chr2R_4_8965001 chr2R_8965001 RAL-884 346 chr2R 9016945 9016975 chr2R 9017030 9017042 8 83 2.0 3.5 2.8 2.1 97 chr2R 9016945 5` UTR CG13744 - chr2R 9016994 5` UTR CG13744 - chr2R 9017042 5` UTR CG13744 - chr2R_8_9015001 chr2R_9015001 RAL-884 347 chr2R 9212691 9212726 chr2R 9213177 9213191 roo 5 474 2.0 3.5 2.8 1.3 500 chr2R 9212691 intergenic CR45309 + chr2R 9212941 intergenic CR45309 + chr2R 9213191 5` UTR CR45309 + chr2R_5_9210001 chr2R_9210001 RAL-884 348 chr2R 9461246 9461259 chr2R 9461329 9461348 6 87 3.5 7.0 5.2 1.0 102 chr2R 9461246 intron Camta + chr2R 9461297 intron Camta + chr2R 9461348 intron Camta + chr2R_6_9460001 chr2R_9460001 RAL-884 349 chr2R 9510668 9510698 chr2R 9510783 9510813 5 115 0.0 1.5 0.8 2.8 145 chr2R 9510668 intron brp + chr2R 9510740 intron brp + chr2R 9510813 intron brp + chr2R_5_9510001 chr2R_9510001 RAL-884 350 chr2R 9669139 9669169 chr2R 9669240 9669246 8 91 3.0 3.5 3.2 1.9 107 chr2R 9669139 intron Mmp2 - chr2R 9669192 intron Mmp2 - chr2R 9669246 intron Mmp2 - chr2R_8_9665001 chr2R_9665001 RAL-884 351 chr2R 9746550 9746583 chr2R 9747900 9747918 6 1337 14.5 25.5 20.0 0.3 1368 chr2R 9746550 5` UTR sqa - chr2R 9747234 5` UTR sqa - chr2R 9747918 5` UTR sqa - chr2R_6_9745001 chr2R_9745001 RAL-884 352 chr2R 9871044 9871061 chr2R 9871530 9871547 roo 6 485 3.5 4.0 3.8 1.2 503 chr2R 9871044 intron cbx - chr2R 9871296 intron cbx - chr2R 9871547 intron,5` UTR cbx -,CG18446 + chr2R_6_9870001 chr2R_9870001 RAL-884 353 chr2R 9945452 9945473 chr2R 9945627 9945645 BS 5 178 3.0 1.5 2.2 1.6 193 chr2R 9945452 intron Mef2 - chr2R 9945548 intron Mef2 - chr2R 9945645 intron Mef2 - chr2R_5_9945001 chr2R_9945001 RAL-884 354 chr2R 10005848 10005872 chr2R 10007013 10007030 1360 5 1160 7.0 3.0 5.0 0.8 1182 chr2R 10005848 intron Pka-R2 - chr2R 10006439 intron Pka-R2 - chr2R 10007030 intron Pka-R2 - chr2R_5_10005001 chr2R_10005001 RAL-884 355 chr2R 10055737 10055762 chr2R 10055813 10055838 6 76 2.0 2.0 2.0 2.0 101 chr2R 10055737 intron magu + chr2R 10055788 intron magu + chr2R 10055838 intron magu + chr2R_6_10055001 chr2R_10055001 RAL-884 356 chr2R 10171115 10171141 chr2R 10171199 10171225 4 84 0.5 2.0 1.2 1.8 110 chr2R 10171115 intron KCNQ - chr2R 10171170 intron KCNQ - chr2R 10171225 intron KCNQ - chr2R_4_10170001 chr2R_10170001 RAL-884 357 chr2R 10359122 10359150 chr2R 10359206 10359232 7 82 2.0 1.5 1.8 2.5 110 chr2R 10359122 intron CG42732 - chr2R 10359177 intron CG42732 - chr2R 10359232 intron CG42732 - chr2R_7_10355001 chr2R_10355001 RAL-884 358 chr2R 10387986 10388003 chr2R 10388080 10388100 5 95 0.0 4.5 2.2 1.6 114 chr2R 10387986 intron CG42732 - chr2R 10388043 intron CG42732 - chr2R 10388100 intron CG42732 - chr2R_5_10385001 chr2R_10385001 RAL-884 359 chr2R 10469022 10469055 chr2R 10469148 10469178 11 126 1.5 4.5 3.0 2.8 156 chr2R 10469022 intron CG11777 + chr2R 10469100 intron CG11777 + chr2R 10469178 intron CG11777 + chr2R_11_10465001 chr2R_10465001 RAL-884 360 chr2R 10556379 10556382 chr2R 10556432 10556464 5 73 0.5 6.5 3.5 1.1 85 chr2R 10556379 intergenic not near genes chr2R 10556422 intergenic not near genes chr2R 10556464 intergenic not near genes chr2R_5_10555001 chr2R_10555001 RAL-884 361 chr2R 10574626 10574637 chr2R 10574708 10574719 6 80 4.0 3.0 3.5 1.3 93 chr2R 10574626 intron psq + chr2R 10574672 intron psq + chr2R 10574719 intron psq + chr2R_6_10570001 chr2R_10570001 RAL-884 362 chr2R 10585573 10585591 chr2R 10594149 10594174 Tirant 8 8579 3.5 1.5 2.5 2.3 8601 chr2R 10585573 intron psq + chr2R 10589874 intron psq + chr2R 10594174 intron psq + chr2R_8_10585001 chr2R_10585001 RAL-884 363 chr2R 10790155 10790175 chr2R 10790228 10790263 4 84 2.0 7.5 4.8 0.7 108 chr2R 10790155 intron CG33144 - chr2R 10790209 intron CG33144 - chr2R 10790263 intron CG33144 - chr2R_4_10790001 chr2R_10790001 RAL-884 364 chr2R 10827331 10827359 chr2R 10827419 10827431 11 80 3.5 2.5 3.0 2.8 100 chr2R 10827331 exon CG12325 + chr2R 10827381 3` UTR CG12325 + chr2R 10827431 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_11_10825001 chr2R_10825001 RAL-884 365 chr2R 10922777 10922790 chr2R 10922863 10922865 4 83 0.0 3.0 1.5 1.6 88 chr2R 10922777 intergenic not near genes chr2R 10922821 intergenic not near genes chr2R 10922865 intergenic not near genes chr2R_4_10920001 chr2R_10920001 RAL-884 366 chr2R 10948039 10948062 chr2R 10955581 10955598 17.6 7 7543 0.5 3.0 1.8 2.5 7559 chr2R 10948039 intergenic not near genes chr2R 10951818 intergenic not near genes chr2R 10955598 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-884 367 chr2R 10979668 10979678 chr2R 10980133 10980146 297 5 466 2.0 5.0 3.5 1.1 478 chr2R 10979668 intergenic not near genes chr2R 10979907 intergenic not near genes chr2R 10980146 intergenic not near genes chr2R_5_10975001 chr2R_10975001 RAL-884 368 chr2R 11009817 11009846 chr2R 11018988 11019017 roo 5 9170 2.0 4.0 3.0 1.2 9200 chr2R 11009817 intron luna - chr2R 11014417 intron luna - chr2R 11019017 intron luna - chr2R_5_11010001 chr2R_11010001 RAL-884 369 chr2R 11059668 11059692 chr2R 11059744 11059769 6 77 3.0 4.0 3.5 1.3 101 chr2R 11059668 intron luna - chr2R 11059718 intron luna - chr2R 11059769 intron luna - chr2R_6_11055001 chr2R_11055001 RAL-884 370 chr2R 11067287 11067298 chr2R 11067395 11067420 4 116 2.5 3.5 3.0 1.0 133 chr2R 11067287 intron luna - chr2R 11067354 intron luna - chr2R 11067420 intron luna - chr2R_4_11065001 chr2R_11065001 RAL-884 371 chr2R 11207815 11207853 chr2R 11208006 11208013 BS 12 183 2.0 3.5 2.8 3.2 198 chr2R 11207815 intron shn + chr2R 11207914 intron shn + chr2R 11208013 intron shn + chr2R_12_11205001 chr2R_11205001 RAL-884 372 chr2R 11344145 11344155 chr2R 11344241 11344247 4 95 0.0 4.0 2.0 1.3 102 chr2R 11344145 intergenic alphaTry - chr2R 11344196 intergenic alphaTry - chr2R 11344247 intergenic alphaTry - chr2R_4_11340001 chr2R_11340001 RAL-884 373 chr2R 11472649 11472673 chr2R 11473846 11473870 pogo 7 1194 4.0 4.5 4.2 1.3 1221 chr2R 11472649 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473870 intergenic not near genes chr2R_7_11470001 chr2R_11470001 RAL-884 374 chr2R 11494314 11494605 chr2R 11494397 11494693 6 85 8.0 2.0 5.0 1.0 379 chr2R 11494314 intron inv + chr2R 11494504 intron inv + chr2R 11494693 intron inv + chr2R_6_11490001 chr2R_11490001 RAL-884 375 chr2R 11561961 11561971 chr2R 11562039 11562049 5 77 5.5 11.5 8.5 0.5 88 chr2R 11561961 intergenic not near genes chr2R 11562005 intergenic not near genes chr2R 11562049 intergenic not near genes chr2R_5_11560001 chr2R_11560001 RAL-884 376 chr2R 11605294 11605305 chr2R 11605456 11605472 7 166 1.5 0.0 0.8 3.9 178 chr2R 11605294 intron tou - chr2R 11605383 intron tou - chr2R 11605472 intron tou - chr2R_7_11605001 chr2R_11605001 RAL-884 377 chr2R 11677875 11677896 chr2R 11677953 11677974 5 78 5.5 2.0 3.8 1.0 99 chr2R 11677875 intron,exon Roc2 -,Tret1-2 + chr2R 11677924 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677974 intron,3` UTR Roc2 -,Tret1-2 + chr2R_5_11675001 chr2R_11675001 RAL-884 378 chr2R 12186013 12186037 chr2R 12186105 12186127 4 93 1.5 5.5 3.5 0.9 114 chr2R 12186013 intron Cyp6g1 + chr2R 12186070 intron Cyp6g1 + chr2R 12186127 intron Cyp6g1 + chr2R_4_12185001 chr2R_12185001 RAL-884 379 chr2R 12187471 12187508 chr2R 12190087 12190124 39 2624 159.0 75.0 117.0 0.3 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_39_12185001 chr2R_12185001 RAL-884 380 chr2R 12363380 12363414 chr2R 12363812 12363846 11 430 2.0 4.5 3.2 2.6 466 chr2R 12363380 intergenic CG30043 + chr2R 12363613 intergenic CG30043 + chr2R 12363846 intergenic not near genes chr2R_11_12360001 chr2R_12360001 RAL-884 381 chr2R 12492101 12492122 chr2R 12492185 12492225 4 92 4.0 0.5 2.2 1.2 124 chr2R 12492101 intron fdl - chr2R 12492163 intron fdl - chr2R 12492225 intron fdl - chr2R_4_12490001 chr2R_12490001 RAL-884 382 chr2R 12501707 12501719 chr2R 12503850 12503872 Rt1c 4 2147 2.5 4.5 3.5 0.9 2165 chr2R 12501707 intron fdl - chr2R 12502790 intron fdl - chr2R 12503872 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-884 383 chr2R 12555444 12555458 chr2R 12556147 12556157 4 700 6.5 1.5 4.0 0.8 713 chr2R 12555444 intron fra + chr2R 12555800 intron fra + chr2R 12556157 intron fra + chr2R_4_12555001 chr2R_12555001 RAL-884 384 chr2R 12610722 12610745 chr2R 12610817 12610837 7 93 4.0 4.5 4.2 1.3 115 chr2R 12610722 intron Amph + chr2R 12610780 intron Amph + chr2R 12610837 intron Amph + chr2R_7_12610001 chr2R_12610001 RAL-884 385 chr2R 12726322 12726354 chr2R 12726414 12726441 6 91 5.0 1.5 3.2 1.4 119 chr2R 12726322 intron CG42663 + chr2R 12726382 intron CG42663 + chr2R 12726441 intron CG42663 + chr2R_6_12725001 chr2R_12725001 RAL-884 386 chr2R 12808320 12808337 chr2R 12808415 12808425 5 92 2.5 4.0 3.2 1.2 105 chr2R 12808320 intergenic not near genes chr2R 12808372 intergenic not near genes chr2R 12808425 intergenic not near genes chr2R_5_12805001 chr2R_12805001 RAL-884 387 chr2R 12995387 12995408 chr2R 12995483 12995505 4 97 4.5 4.0 4.2 0.8 118 chr2R 12995387 intergenic not near genes chr2R 12995446 intergenic not near genes chr2R 12995505 intergenic not near genes chr2R_4_12995001 chr2R_12995001 RAL-884 388 chr2R 13123163 13123189 chr2R 13123501 13123527 5 341 4.0 1.0 2.5 1.4 364 chr2R 13123163 exon CG13325 + chr2R 13123345 exon CG13325 + chr2R 13123527 exon CG13325 + chr2R_5_13120001 chr2R_13120001 RAL-884 389 chr2R 13136859 13136864 chr2R 13141634 13141662 Doc 4 4789 8.0 3.5 5.8 0.6 4803 chr2R 13136859 intron Cap-G + chr2R 13139260 intron Cap-G + chr2R 13141662 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-884 390 chr2R 13580512 13580532 chr2R 13580847 13580874 jockey 7 338 0.0 2.5 1.2 3.2 362 chr2R 13580512 3` UTR CG6191 - chr2R 13580693 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580874 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_7_13580001 chr2R_13580001 RAL-884 391 chr2R 13768993 13769009 chr2R 13769079 13769082 5 88 2.5 7.0 4.8 0.9 89 chr2R 13768993 intergenic not near genes chr2R 13769038 intergenic not near genes chr2R 13769082 intergenic not near genes chr2R_5_13765001 chr2R_13765001 RAL-884 392 chr2R 13905601 13905635 chr2R 13907582 13907591 Rt1a 6 1977 2.0 3.0 2.5 1.7 1990 chr2R 13905601 intron shot - chr2R 13906596 intron shot - chr2R 13907591 intron shot - chr2R_6_13905001 chr2R_13905001 RAL-884 393 chr2R 14050851 14050854 chr2R 14050942 14050952 4 95 1.0 11.0 6.0 0.6 101 chr2R 14050851 intron mam + chr2R 14050902 intron mam + chr2R 14050952 intron mam + chr2R_4_14050001 chr2R_14050001 RAL-884 394 chr2R 14277578 14277609 chr2R 14277660 14277691 7 82 2.5 2.5 2.5 2.0 113 chr2R 14277578 5` UTR Ih + chr2R 14277634 5` UTR Ih + chr2R 14277691 5` UTR Ih + chr2R_7_14275001 chr2R_14275001 RAL-884 395 chr2R 14530745 14530775 chr2R 14530827 14530857 12 81 3.0 5.0 4.0 2.4 112 chr2R 14530745 intron ttv + chr2R 14530801 intron ttv + chr2R 14530857 intron ttv + chr2R_12_14530001 chr2R_14530001 RAL-884 396 chr2R 14565565 14565582 chr2R 14565640 14565659 4 74 1.5 3.0 2.2 1.2 94 chr2R 14565565 intron ttv + chr2R 14565612 intron ttv + chr2R 14565659 intron ttv + chr2R_4_14565001 chr2R_14565001 RAL-884 397 chr2R 14606038 14606068 chr2R 14606159 14606186 6 116 2.0 1.5 1.8 2.1 148 chr2R 14606038 exon CG33469 - chr2R 14606112 exon CG33469 - chr2R 14606186 5` UTR CG33469 - chr2R_6_14605001 chr2R_14605001 RAL-884 398 chr2R 14634280 14634309 chr2R 14634367 14634396 6 85 4.0 2.5 3.2 1.4 116 chr2R 14634280 intergenic not near genes chr2R 14634338 intergenic not near genes chr2R 14634396 intergenic not near genes chr2R_6_14630001 chr2R_14630001 RAL-884 399 chr2R 14855030 14855051 chr2R 14855122 14855135 6 90 6.0 0.0 3.0 1.5 105 chr2R 14855030 5` UTR Ciao1 - chr2R 14855082 intergenic Ciao1 -,HPS1 + chr2R 14855135 intergenic Ciao1 -,HPS1 + chr2R_6_14855001 chr2R_14855001 RAL-884 400 chr2R 14911704 14911727 chr2R 14911826 14911828 5 118 2.0 3.0 2.5 1.4 124 chr2R 14911704 intron CG10249 - chr2R 14911766 intron CG10249 - chr2R 14911828 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-884 401 chr2R 15015466 15015475 chr2R 15022888 15022898 mdg1 4 7422 5.0 3.0 4.0 0.8 7432 chr2R 15015466 intron hbs + chr2R 15019182 intron hbs + chr2R 15022898 intron hbs + chr2R_4_15015001 chr2R_15015001 RAL-884 402 chr2R 15027490 15027516 chr2R 15027578 15027600 4 87 1.5 2.5 2.0 1.3 110 chr2R 15027490 intron hbs + chr2R 15027545 intron hbs + chr2R 15027600 intron hbs + chr2R_4_15025001 chr2R_15025001 RAL-884 403 chr2R 15084979 15085008 chr2R 15092028 15092056 297 8 7048 2.5 3.0 2.8 2.1 7077 chr2R 15084979 intergenic not near genes chr2R 15088518 intergenic not near genes chr2R 15092056 5` UTR CR44457 + chr2R_8_15085001 chr2R_15085001 RAL-884 404 chr2R 15137972 15138003 chr2R 15138052 15138085 7 81 1.5 0.5 1.0 3.5 113 chr2R 15137972 intron chn + chr2R 15138028 intron chn + chr2R 15138085 intron chn + chr2R_7_15135001 chr2R_15135001 RAL-884 405 chr2R 15422177 15422194 chr2R 15426702 15426711 5 4519 22.0 20.0 21.0 0.2 4534 chr2R 15422177 exon CG43729 + chr2R 15424444 intron CG43729 + chr2R 15426711 intron CG43729 + chr2R_5_15420001 chr2R_15420001 RAL-884 406 chr2R 15650579 15650604 chr2R 15650655 15650683 11 79 4.0 4.0 4.0 2.2 104 chr2R 15650579 intron CG42524 + chr2R 15650631 intron CG42524 + chr2R 15650683 intron CG42524 + chr2R_11_15650001 chr2R_15650001 RAL-884 407 chr2R 15851173 15851198 chr2R 15859630 15859650 6 8453 23.0 20.0 21.5 0.3 8477 chr2R 15851173 intron tun + chr2R 15855412 intergenic not near genes chr2R 15859650 exon Gpo-1 - chr2R_6_15855001 chr2R_15855001 RAL-884 408 chr2R 15987958 15987970 chr2R 15988037 15988048 5 78 4.0 0.5 2.2 1.6 90 chr2R 15987958 intron,5` UTR Strn-Mlck -,CR45021 + chr2R 15988003 intron,5` UTR Strn-Mlck -,CR45021 + chr2R 15988048 intron,5` UTR Strn-Mlck -,CR45021 + chr2R_5_15985001 chr2R_15985001 RAL-884 409 chr2R 16245418 16245425 chr2R 16245512 16245517 4 93 2.5 1.0 1.8 1.4 99 chr2R 16245418 intron CngA - chr2R 16245468 intron CngA - chr2R 16245517 intron CngA - chr2R_4_16245001 chr2R_16245001 RAL-884 410 chr2R 16489275 16489294 chr2R 16489358 16489378 9 83 2.0 4.5 3.2 2.1 103 chr2R 16489275 intergenic CG33459 + chr2R 16489326 intergenic CG33459 + chr2R 16489378 intergenic CG33459 + chr2R_9_16485001 chr2R_16485001 RAL-884 411 chr2R 16500584 16500616 chr2R 16500677 16500683 5 89 0.5 0.5 0.5 3.3 99 chr2R 16500584 intron Sema-2a + chr2R 16500634 intron Sema-2a + chr2R 16500683 intron Sema-2a + chr2R_5_16500001 chr2R_16500001 RAL-884 412 chr2R 16547022 16547034 chr2R 16547082 16547098 4 65 0.5 0.0 0.2 3.3 76 chr2R 16547022 intergenic not near genes chr2R 16547060 intergenic not near genes chr2R 16547098 intergenic not near genes chr2R_4_16545001 chr2R_16545001 RAL-884 413 chr2R 16571871 16571903 chr2R 16571966 16571998 6 94 1.0 0.0 0.5 4.0 127 chr2R 16571871 intergenic CG4927 + chr2R 16571934 intergenic CG4927 + chr2R 16571998 intergenic CG4927 + chr2R_6_16570001 chr2R_16570001 RAL-884 414 chr2R 16586876 16586905 chr2R 16586954 16586983 4 74 3.5 1.0 2.2 1.2 107 chr2R 16586876 intergenic RpLP2 +,CG8311 - chr2R 16586930 intergenic CG8311 -,RpLP2 + chr2R 16586983 intergenic CG8311 -,RpLP2 + chr2R_4_16585001 chr2R_16585001 RAL-884 415 chr2R 16617059 16617088 chr2R 16617138 16617167 8 79 1.0 3.0 2.0 2.7 108 chr2R 16617059 intron CG5065 + chr2R 16617113 intron CG5065 + chr2R 16617167 intron CG5065 + chr2R_8_16615001 chr2R_16615001 RAL-884 416 chr2R 16705080 16705108 chr2R 16705173 16705198 9 89 5.0 3.0 4.0 1.8 118 chr2R 16705080 intron CG30463 - chr2R 16705139 intron CG30463 - chr2R 16705198 intron CG30463 - chr2R_9_16705001 chr2R_16705001 RAL-884 417 chr2R 16728584 16728614 chr2R 16728770 16728798 4 186 0.5 5.0 2.8 1.1 214 chr2R 16728584 intron CG30463 - chr2R 16728691 intron CG30463 - chr2R 16728798 intron CG30463 - chr2R_4_16725001 chr2R_16725001 RAL-884 418 chr2R 16958966 16958983 chr2R 16959055 16959061 7 91 0.0 5.0 2.5 2.0 95 chr2R 16958966 3` UTR CG9010 - chr2R 16959014 3` UTR CG9010 - chr2R 16959061 3` UTR CG9010 - chr2R_7_16955001 chr2R_16955001 RAL-884 419 chr2R 17142005 17142030 chr2R 17142108 17142134 6 104 6.0 2.0 4.0 1.2 129 chr2R 17142005 intergenic not near genes chr2R 17142070 intergenic not near genes chr2R 17142134 intergenic not near genes chr2R_6_17140001 chr2R_17140001 RAL-884 420 chr2R 17161172 17161202 chr2R 17161257 17161273 4 76 0.5 2.5 1.5 1.6 101 chr2R 17161172 intergenic CG30457 - chr2R 17161222 intergenic CG30457 - chr2R 17161273 intergenic CG30457 - chr2R_4_17160001 chr2R_17160001 RAL-884 421 chr2R 17236513 17236540 chr2R 17241717 17241743 copia 5 5202 1.0 5.5 3.2 1.2 5230 chr2R 17236513 intron mbl + chr2R 17239128 intron mbl + chr2R 17241743 intron mbl + chr2R_5_17235001 chr2R_17235001 RAL-884 422 chr2R 17443775 17443796 chr2R 17443850 17443872 5 76 1.0 1.0 1.0 2.5 97 chr2R 17443775 intron EDTP - chr2R 17443824 intron EDTP - chr2R 17443872 intron EDTP - chr2R_5_17440001 chr2R_17440001 RAL-884 423 chr2R 17616996 17617010 chr2R 17617057 17617086 5 72 4.5 3.0 3.8 1.0 90 chr2R 17616996 intron,3` UTR CG10936 -,CG44403 - chr2R 17617041 intron,3` UTR CG10936 -,CG44403 - chr2R 17617086 intron,3` UTR CG10936 -,CG44403 - chr2R_5_17615001 chr2R_17615001 RAL-884 424 chr2R 17655203 17655230 chr2R 17655276 17655292 4 67 3.5 3.0 3.2 1.0 89 chr2R 17655203 intron CCHa1-R - chr2R 17655248 intron CCHa1-R - chr2R 17655292 intron CCHa1-R - chr2R_4_17655001 chr2R_17655001 RAL-884 425 chr2R 17661369 17661395 chr2R 17661513 17661539 5 142 3.5 5.5 4.5 0.9 170 chr2R 17661369 intron CCHa1-R - chr2R 17661454 intron CCHa1-R - chr2R 17661539 intron CCHa1-R - chr2R_5_17660001 chr2R_17660001 RAL-884 426 chr2R 17784024 17784056 chr2R 17784265 17784280 pogo 9 237 4.5 3.0 3.8 1.9 256 chr2R 17784024 intergenic mir-31a - chr2R 17784152 intergenic mir-31a - chr2R 17784280 intergenic mir-31a - chr2R_9_17780001 chr2R_17780001 RAL-884 427 chr2R 17883537 17883556 chr2R 17883622 17883653 5 94 1.5 2.0 1.8 1.8 116 chr2R 17883537 intron Elk + chr2R 17883595 intron Elk + chr2R 17883653 intron Elk + chr2R_5_17880001 chr2R_17880001 RAL-884 428 chr2R 17898742 17898766 chr2R 17898831 17898836 4 81 2.0 1.0 1.5 1.6 94 chr2R 17898742 intron Elk + chr2R 17898789 intron Elk + chr2R 17898836 intron Elk + chr2R_4_17895001 chr2R_17895001 RAL-884 429 chr2R 17922688 17922691 chr2R 17922808 17922818 4 124 4.5 3.0 3.8 0.8 130 chr2R 17922688 intron Elk + chr2R 17922753 intron Elk + chr2R 17922818 intron Elk + chr2R_4_17920001 chr2R_17920001 RAL-884 430 chr2R 17922692 17922711 chr2R 17922807 17922837 9 123 2.5 3.0 2.8 2.4 145 chr2R 17922692 intron Elk + chr2R 17922764 intron Elk + chr2R 17922837 intron Elk + chr2R_9_17920001 chr2R_17920001 RAL-884 431 chr2R 17974544 17974552 chr2R 17974660 17974680 5 125 7.5 2.0 4.8 0.9 136 chr2R 17974544 intergenic not near genes chr2R 17974612 intergenic not near genes chr2R 17974680 intergenic dpr13 - chr2R_5_17970001 chr2R_17970001 RAL-884 432 chr2R 18127375 18127392 chr2R 18127494 18127511 4 119 2.5 1.0 1.8 1.4 136 chr2R 18127375 intron Spn55B + chr2R 18127443 intron Spn55B + chr2R 18127511 intron Spn55B + chr2R_4_18125001 chr2R_18125001 RAL-884 433 chr2R 18358391 18358411 chr2R 18372603 18372623 roo 5 14212 2.0 0.5 1.2 2.3 14232 chr2R 18358391 intergenic not near genes chr2R 18365507 intergenic not near genes chr2R 18372623 intergenic not near genes chr2R_5_18365001 chr2R_18365001 RAL-884 434 chr2R 18376234 18376246 chr2R 18376369 18376383 6 139 2.5 3.5 3.0 1.5 149 chr2R 18376234 intergenic not near genes chr2R 18376308 intergenic not near genes chr2R 18376383 intergenic not near genes chr2R_6_18375001 chr2R_18375001 RAL-884 435 chr2R 18376734 18376764 chr2R 18376824 18376852 5 90 0.5 5.0 2.8 1.3 118 chr2R 18376734 intergenic not near genes chr2R 18376793 intergenic not near genes chr2R 18376852 intergenic not near genes chr2R_5_18375001 chr2R_18375001 RAL-884 436 chr2R 18408289 18408298 chr2R 18408410 18408419 6 121 10.0 4.0 7.0 0.8 130 chr2R 18408289 exon GstE8 + chr2R 18408354 exon GstE8 + chr2R 18408419 exon GstE8 + chr2R_6_18405001 chr2R_18405001 RAL-884 437 chr2R 18408300 18408310 chr2R 18408405 18408423 4 110 7.5 4.0 5.8 0.6 123 chr2R 18408300 exon GstE8 + chr2R 18408362 exon GstE8 + chr2R 18408423 exon GstE8 + chr2R_4_18405001 chr2R_18405001 RAL-884 438 chr2R 18575812 18575821 chr2R 18581984 18582009 3S18 4 6180 4.0 2.0 3.0 1.0 6197 chr2R 18575812 intron GEFmeso - chr2R 18578910 intron GEFmeso - chr2R 18582009 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-884 439 chr2R 18590871 18590901 chr2R 18600023 18600053 roo 7 9149 0.0 3.5 1.8 2.5 9182 chr2R 18590871 intron GEFmeso - chr2R 18595462 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-884 440 chr2R 18646426 18646433 chr2R 18646557 18646578 4 140 3.0 3.5 3.2 1.0 152 chr2R 18646426 intron SP2637 - chr2R 18646502 intron SP2637 - chr2R 18646578 intron SP2637 - chr2R_4_18645001 chr2R_18645001 RAL-884 441 chr2R 18666501 18666524 chr2R 18666576 18666604 9 75 1.0 4.5 2.8 2.4 103 chr2R 18666501 intergenic not near genes chr2R 18666552 intergenic not near genes chr2R 18666604 intergenic not near genes chr2R_9_18665001 chr2R_18665001 RAL-884 442 chr2R 18785914 18785948 chr2R 18785992 18786027 7 79 3.5 3.0 3.2 1.7 113 chr2R 18785914 intron CG15080 + chr2R 18785970 intron CG15080 + chr2R 18786027 intron CG15080 + chr2R_7_18785001 chr2R_18785001 RAL-884 443 chr2R 18964920 18964953 chr2R 18964996 18965027 6 76 0.5 1.5 1.0 3.0 107 chr2R 18964920 intergenic not near genes chr2R 18964974 intergenic not near genes chr2R 18965027 intergenic not near genes chr2R_6_18960001 chr2R_18960001 RAL-884 444 chr2R 19043767 19043794 chr2R 19043855 19043863 5 83 2.5 5.0 3.8 1.0 96 chr2R 19043767 intergenic not near genes chr2R 19043815 intergenic not near genes chr2R 19043863 intergenic not near genes chr2R_5_19040001 chr2R_19040001 RAL-884 445 chr2R 19072121 19072136 chr2R 19072186 19072192 6 64 4.0 1.5 2.8 1.6 71 chr2R 19072121 intron 5-HT1A + chr2R 19072156 intron 5-HT1A + chr2R 19072192 intron 5-HT1A + chr2R_6_19070001 chr2R_19070001 RAL-884 446 chr2R 19194500 19194529 chr2R 19194892 19194906 10 391 5.0 2.0 3.5 2.2 406 chr2R 19194500 intron hppy + chr2R 19194703 intron hppy + chr2R 19194906 intron hppy + chr2R_10_19190001 chr2R_19190001 RAL-884 447 chr2R 19300965 19300994 chr2R 19301048 19301063 9 81 4.0 7.0 5.5 1.4 98 chr2R 19300965 intron Tab2 + chr2R 19301014 intron Tab2 + chr2R 19301063 intron Tab2 + chr2R_9_19300001 chr2R_19300001 RAL-884 448 chr2R 19331656 19331680 chr2R 19331897 19331921 9 239 2.0 1.5 1.8 3.2 265 chr2R 19331656 intron,intron Rgk1 -,CG34045 + chr2R 19331788 intron,intron Rgk1 -,CG34045 + chr2R 19331921 intron,intron Rgk1 -,CG34045 + chr2R_9_19330001 chr2R_19330001 RAL-884 449 chr2R 19359036 19359068 chr2R 19359118 19359150 9 80 3.5 3.0 3.2 2.1 114 chr2R 19359036 intron CG11961 + chr2R 19359093 intron CG11961 + chr2R 19359150 intron CG11961 + chr2R_9_19355001 chr2R_19355001 RAL-884 450 chr2R 19384016 19384048 chr2R 19384124 19384156 14 104 3.5 3.5 3.5 3.1 140 chr2R 19384016 exon CG10073 + chr2R 19384086 exon CG10073 + chr2R 19384156 intron CG10073 + chr2R_14_19380001 chr2R_19380001 RAL-884 451 chr2R 19585270 19585286 chr2R 19585347 19585364 5 75 2.0 4.5 3.2 1.2 94 chr2R 19585270 intron sm - chr2R 19585317 intron sm - chr2R 19585364 intron sm - chr2R_5_19585001 chr2R_19585001 RAL-884 452 chr2R 19622192 19622212 chr2R 19622276 19622289 6 82 4.5 2.0 3.2 1.4 97 chr2R 19622192 intron sm - chr2R 19622240 intron sm - chr2R 19622289 intron sm - chr2R_6_19620001 chr2R_19620001 RAL-884 453 chr2R 19776615 19776627 chr2R 19779922 19779950 jockey 5 3315 5.5 4.5 5.0 0.8 3335 chr2R 19776615 intergenic not near genes chr2R 19778282 intergenic not near genes chr2R 19779950 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-884 454 chr2R 19857350 19857355 chr2R 19857418 19857440 4 72 3.0 1.0 2.0 1.3 90 chr2R 19857350 intergenic not near genes chr2R 19857395 intergenic not near genes chr2R 19857440 intergenic not near genes chr2R_4_19855001 chr2R_19855001 RAL-884 455 chr2R 20151980 20151986 chr2R 20152051 20152071 4 78 0.5 2.5 1.5 1.6 91 chr2R 20151980 intergenic not near genes chr2R 20152026 intergenic not near genes chr2R 20152071 intergenic not near genes chr2R_4_20150001 chr2R_20150001 RAL-884 456 chr2R 20490550 20490554 chr2R 20490609 20490617 4 67 4.5 2.0 3.2 1.0 67 chr2R 20490550 intergenic CR44643 - chr2R 20490584 intergenic CR44643 - chr2R 20490617 intergenic CR44643 - chr2R_4_20490001 chr2R_20490001 RAL-884 457 chr2R 20523039 20523070 chr2R 20523150 20523177 7 104 2.5 2.0 2.2 2.2 138 chr2R 20523039 intergenic not near genes chr2R 20523108 intergenic not near genes chr2R 20523177 intergenic not near genes chr2R_7_20520001 chr2R_20520001 RAL-884 458 chr2R 20601722 20601746 chr2R 20601807 20601813 5 78 0.0 2.0 1.0 2.5 91 chr2R 20601722 intron bl + chr2R 20601768 intron bl + chr2R 20601813 intron bl + chr2R_5_20600001 chr2R_20600001 RAL-884 459 chr2R 20739466 20739473 chr2R 20744221 20744236 F-element 4 4762 2.0 5.5 3.8 0.8 4770 chr2R 20739466 intron dpr + chr2R 20741851 intron dpr + chr2R 20744236 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-884 460 chr2R 20812256 20812277 chr2R 20812322 20812340 10 76 2.5 2.5 2.5 2.9 84 chr2R 20812256 intergenic not near genes chr2R 20812298 intergenic not near genes chr2R 20812340 intergenic not near genes chr2R_10_20810001 chr2R_20810001 RAL-884 461 chr2R 20865498 20865526 chr2R 20865575 20865603 8 76 5.0 5.5 5.2 1.3 105 chr2R 20865498 intron CG15227 + chr2R 20865550 intron CG15227 + chr2R 20865603 intron CG15227 + chr2R_8_20865001 chr2R_20865001 RAL-884 462 chr2R 20865527 20865533 chr2R 20865574 20865589 4 53 4.0 6.0 5.0 0.7 62 chr2R 20865527 intron CG15227 + chr2R 20865558 intron CG15227 + chr2R 20865589 intron CG15227 + chr2R_4_20865001 chr2R_20865001 RAL-884 463 chr2R 20932187 20932198 chr2R 20932521 20932532 5 332 8.0 6.5 7.2 0.6 345 chr2R 20932187 intron Rx + chr2R 20932360 intron Rx + chr2R 20932532 intron Rx + chr2R_5_20930001 chr2R_20930001 RAL-884 464 chr2R 20932200 20932209 chr2R 20932518 20932539 6 327 6.5 4.5 5.5 0.9 339 chr2R 20932200 intron Rx + chr2R 20932370 intron Rx + chr2R 20932539 intron Rx + chr2R_6_20930001 chr2R_20930001 RAL-884 465 chr2R 21103623 21103648 chr2R 21108217 21108229 7 4586 15.0 19.0 17.0 0.4 4606 chr2R 21103623 intron ktub + chr2R 21105926 intron ktub + chr2R 21108229 intron ktub + chr2R_7_21105001 chr2R_21105001 RAL-884 466 chr2R 21188226 21188234 chr2R 21188303 21188315 5 80 5.0 3.0 4.0 1.0 89 chr2R 21188226 exon tud + chr2R 21188270 intron tud + chr2R 21188315 intron tud + chr2R_5_21185001 chr2R_21185001 RAL-884 467 chr2R 21598989 21599002 chr2R 21599130 21599160 7 149 2.5 4.0 3.2 1.7 171 chr2R 21598989 intergenic not near genes chr2R 21599074 intergenic not near genes chr2R 21599160 intergenic not near genes chr2R_7_21595001 chr2R_21595001 RAL-884 468 chr2R 21605920 21605944 chr2R 21606004 21606028 6 84 2.0 2.0 2.0 2.0 108 chr2R 21605920 3` UTR CG10433 - chr2R 21605974 3` UTR CG10433 - chr2R 21606028 3` UTR CG10433 - chr2R_6_21605001 chr2R_21605001 RAL-884 469 chr2R 21738284 21738306 chr2R 21747444 21747464 roo 5 9156 0.5 5.5 3.0 1.2 9180 chr2R 21738284 intergenic not near genes chr2R 21742874 intergenic not near genes chr2R 21747464 intergenic not near genes chr2R_5_21740001 chr2R_21740001 RAL-884 470 chr2R 21753086 21753117 chr2R 21753571 21753599 roo 7 484 3.5 2.5 3.0 1.8 513 chr2R 21753086 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753599 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-884 471 chr2R 21757229 21757244 chr2R 21757299 21757325 5 76 5.5 1.0 3.2 1.2 96 chr2R 21757229 intergenic Grx-1 + chr2R 21757277 intergenic Grx-1 + chr2R 21757325 intergenic Grx-1 + chr2R_5_21755001 chr2R_21755001 RAL-884 472 chr2R 21805826 21805859 chr2R 21805903 21805933 10 75 2.0 1.0 1.5 4.0 107 chr2R 21805826 intergenic not near genes chr2R 21805880 intergenic not near genes chr2R 21805933 intergenic not near genes chr2R_10_21805001 chr2R_21805001 RAL-884 473 chr2R 21809525 21809558 chr2R 21817765 21817797 roo 5 8240 2.0 5.5 3.8 1.0 8272 chr2R 21809525 intergenic not near genes chr2R 21813661 intergenic not near genes chr2R 21817797 intergenic not near genes chr2R_5_21810001 chr2R_21810001 RAL-884 474 chr2R 21894908 21894919 chr2R 21894965 21894992 4 65 0.0 4.5 2.2 1.2 84 chr2R 21894908 intron Fili + chr2R 21894950 intron Fili + chr2R 21894992 intron Fili + chr2R_4_21890001 chr2R_21890001 RAL-884 475 chr2R 21906279 21906298 chr2R 21906380 21906399 7 101 0.5 1.0 0.8 3.9 120 chr2R 21906279 intron Fili + chr2R 21906339 intron Fili + chr2R 21906399 intron Fili + chr2R_7_21905001 chr2R_21905001 RAL-884 476 chr2R 21997060 21997071 chr2R 21997417 21997431 6 359 1.5 4.0 2.8 1.6 371 chr2R 21997060 intron CG34370 - chr2R 21997246 intron CG34370 - chr2R 21997431 intron CG34370 - chr2R_6_21995001 chr2R_21995001 RAL-884 477 chr2R 22014215 22014230 chr2R 22014274 22014275 7 62 4.5 3.5 4.0 1.4 60 chr2R 22014215 intron CG34370 - chr2R 22014245 intron CG34370 - chr2R 22014275 intron CG34370 - chr2R_7_22010001 chr2R_22010001 RAL-884 478 chr2R 22102115 22102130 chr2R 22102203 22102216 5 86 0.5 2.5 1.5 2.0 101 chr2R 22102115 intergenic not near genes chr2R 22102166 intergenic not near genes chr2R 22102216 intergenic not near genes chr2R_5_22100001 chr2R_22100001 RAL-884 479 chr2R 22113591 22113620 chr2R 22113682 22113711 5 91 3.0 1.0 2.0 1.7 120 chr2R 22113591 intron,5` UTR Vrp1 -,CG30280 + chr2R 22113651 intron,exon Vrp1 -,CG30280 + chr2R 22113711 intron,intron Vrp1 -,CG30280 + chr2R_5_22110001 chr2R_22110001 RAL-884 480 chr2R 22185674 22185706 chr2R 22185772 22185805 8 97 0.0 0.0 0.0 8.0 131 chr2R 22185674 3` UTR MED16 + chr2R 22185740 3` UTR MED16 + chr2R 22185805 3` UTR MED16 + chr2R_8_22185001 chr2R_22185001 RAL-884 481 chr2R 22247555 22247566 chr2R 22247629 22247644 4 77 1.5 3.0 2.2 1.2 89 chr2R 22247555 intron dve + chr2R 22247600 intron dve + chr2R 22247644 intron dve + chr2R_4_22245001 chr2R_22245001 RAL-884 482 chr2R 22324490 22324520 chr2R 22324808 22324838 4 316 2.0 4.0 3.0 1.0 348 chr2R 22324490 intron Gp150 + chr2R 22324664 intron Gp150 + chr2R 22324838 intron Gp150 + chr2R_4_22320001 chr2R_22320001 RAL-884 483 chr2R 22360387 22360399 chr2R 22360820 22360826 jockey 8 432 5.0 1.5 3.2 1.9 439 chr2R 22360387 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360826 intron Liprin-gamma - chr2R_8_22360001 chr2R_22360001 RAL-884 484 chr2R 22364358 22364374 chr2R 22364588 22364618 14 229 23.5 25.5 24.5 0.5 260 chr2R 22364358 intron Liprin-gamma - chr2R 22364488 intron Liprin-gamma - chr2R 22364618 intron Liprin-gamma - chr2R_14_22360001 chr2R_22360001 RAL-884 485 chr2R 22465330 22465348 chr2R 22465511 22465519 BS 4 186 2.5 1.0 1.8 1.4 189 chr2R 22465330 intron CG10384 + chr2R 22465424 intron CG10384 + chr2R 22465519 intron CG10384 + chr2R_4_22465001 chr2R_22465001 RAL-884 486 chr2R 22499861 22499887 chr2R 22499925 22499963 9 72 0.5 2.5 1.5 3.6 102 chr2R 22499861 intron px - chr2R 22499912 intron px - chr2R 22499963 intron px - chr2R_9_22495001 chr2R_22495001 RAL-884 487 chr2R 22525753 22525786 chr2R 22529300 22529300 jockey 4 3542 0.5 2.0 1.2 1.8 3547 chr2R 22525753 intron px - chr2R 22527526 intron px - chr2R 22529300 intron px - chr2R_4_22525001 chr2R_22525001 RAL-884 488 chr2R 22653183 22653215 chr2R 22654886 22654917 17 1697 4.5 1.5 3.0 4.2 1734 chr2R 22653183 3` UTR,intron nsr +,Cyp6d2 - chr2R 22654050 exon Cyp6d2 - chr2R 22654917 exon CG30196 - chr2R_17_22650001 chr2R_22650001 RAL-884 489 chr2R 22757215 22757246 chr2R 22757489 22757520 12 273 5.5 3.0 4.2 2.3 305 chr2R 22757215 intron,intron CG42260 -,CR30267 + chr2R 22757368 intron,intron CG42260 -,CR30267 + chr2R 22757520 intron,intron CG42260 -,CR30267 + chr2R_12_22755001 chr2R_22755001 RAL-884 490 chr2R 22774969 22775000 chr2R 22775388 22775399 jockey 10 416 3.0 4.0 3.5 2.2 430 chr2R 22774969 intron CG42260 - chr2R 22775184 intron CG42260 - chr2R 22775399 intron CG42260 - chr2R_10_22775001 chr2R_22775001 RAL-884 491 chr2R 22834648 22834933 chr2R 22837418 22837674 5 2765 1.5 17.0 9.2 0.5 3026 chr2R 22834648 5` UTR CG12490 + chr2R 22836161 exon CG12490 + chr2R 22837674 intron CG9825 + chr2R_5_22835001 chr2R_22835001 RAL-884 492 chr2R 22968150 22968161 chr2R 22968239 22968249 5 88 2.0 4.0 3.0 1.2 99 chr2R 22968150 intergenic not near genes chr2R 22968200 intergenic not near genes chr2R 22968249 intergenic not near genes chr2R_5_22965001 chr2R_22965001 RAL-884 493 chr2R 22969312 22969326 chr2R 22971562 22971576 5 2253 16.0 18.5 17.2 0.3 2264 chr2R 22969312 intergenic not near genes chr2R 22970444 intergenic not near genes chr2R 22971576 intergenic not near genes chr2R_5_22970001 chr2R_22970001 RAL-884 494 chr2R 23029614 23029635 chr2R 23029691 23029712 6 75 4.5 2.5 3.5 1.3 98 chr2R 23029614 intron,intron twi +,CG42741 - chr2R 23029663 intron,intron twi +,CG42741 - chr2R 23029712 intron,intron twi +,CG42741 - chr2R_6_23025001 chr2R_23025001 RAL-884 495 chr2R 23162031 23162036 chr2R 23162144 23162149 4 113 5.0 3.5 4.2 0.8 118 chr2R 23162031 3` UTR CG9899 + chr2R 23162090 intergenic CG9899 + chr2R 23162149 intergenic CG9899 + chr2R_4_23160001 chr2R_23160001 RAL-884 496 chr2R 23219007 23219024 chr2R 23219246 23219251 4 235 3.0 0.0 1.5 1.6 244 chr2R 23219007 intergenic not near genes chr2R 23219129 intergenic not near genes chr2R 23219251 intergenic not near genes chr2R_4_23215001 chr2R_23215001 RAL-884 497 chr2R 23402611 23402640 chr2R 23407687 23407716 flea 4 5072 2.0 2.5 2.2 1.2 5105 chr2R 23402611 intergenic CG3520 - chr2R 23405164 intergenic not near genes chr2R 23407716 intergenic not near genes chr2R_4_23405001 chr2R_23405001 RAL-884 498 chr2R 23475640 23475655 chr2R 23475729 23475748 6 95 4.0 0.5 2.2 1.9 108 chr2R 23475640 intron CG43795 + chr2R 23475694 intron CG43795 + chr2R 23475748 intron,3` UTR CG43795 +,CG13557 - chr2R_6_23475001 chr2R_23475001 RAL-884 499 chr2R 23607047 23607190 chr2R 23607126 23607283 7 82 3.5 5.0 4.2 1.3 236 chr2R 23607047 intron CG17664 - chr2R 23607165 intron CG17664 - chr2R 23607283 intron CG17664 - chr2R_7_23605001 chr2R_23605001 RAL-884 500 chr2R 23857109 23857138 chr2R 23857195 23857224 10 83 2.0 5.0 3.5 2.2 115 chr2R 23857109 intron bgcn - chr2R 23857166 intron bgcn - chr2R 23857224 exon bgcn - chr2R_10_23855001 chr2R_23855001 RAL-884 501 chr2R 24031382 24031413 chr2R 24031466 24031497 9 81 1.0 2.5 1.8 3.2 115 chr2R 24031382 5` UTR CG30172 - chr2R 24031440 intergenic CG30172 -,Chi - chr2R 24031497 intergenic Chi -,CG30172 - chr2R_9_24030001 chr2R_24030001 RAL-884 502 chr2R 24045872 24045900 chr2R 24045956 24045984 9 76 4.5 1.5 3.0 2.2 112 chr2R 24045872 intron tsr - chr2R 24045928 intron tsr - chr2R 24045984 intron tsr - chr2R_9_24045001 chr2R_24045001 RAL-884 503 chr2R 24147072 24147094 chr2R 24154650 24154659 412 6 7573 5.5 6.0 5.8 0.9 7587 chr2R 24147072 intron Dat + chr2R 24150866 intron Dat + chr2R 24154659 intron Dat + chr2R_6_24150001 chr2R_24150001 RAL-884 504 chr2R 24278323 24278361 chr2R 24278406 24278437 12 77 1.0 4.5 2.8 3.2 114 chr2R 24278323 intron nvy + chr2R 24278380 intron nvy + chr2R 24278437 intron nvy + chr2R_12_24275001 chr2R_24275001 RAL-884 505 chr2R 24323626 24323654 chr2R 24323709 24323747 7 87 4.0 3.5 3.8 1.5 121 chr2R 24323626 intergenic not near genes chr2R 24323686 intergenic not near genes chr2R 24323747 intergenic not near genes chr2R_7_24320001 chr2R_24320001 RAL-884 506 chr2R 24353429 24353457 chr2R 24361788 24361800 roo 8 8359 3.0 4.0 3.5 1.8 8371 chr2R 24353429 intron,intron bs +,CR44811 - chr2R 24357614 intron,intron bs +,CR44811 - chr2R 24361800 intron,intron bs +,CR44811 - chr2R_8_24355001 chr2R_24355001 RAL-884 507 chr2R 24383835 24383857 chr2R 24383915 24383921 8 76 1.0 3.0 2.0 2.7 86 chr2R 24383835 intron mAChR-A - chr2R 24383878 intron mAChR-A - chr2R 24383921 intron mAChR-A - chr2R_8_24380001 chr2R_24380001 RAL-884 508 chr2R 24508415 24508438 chr2R 24508679 24508702 11 261 5.0 2.5 3.8 2.3 287 chr2R 24508415 intergenic not near genes chr2R 24508558 intergenic not near genes chr2R 24508702 intergenic not near genes chr2R_11_24505001 chr2R_24505001 RAL-884 509 chr2R 24520609 24520645 chr2R 24520692 24520726 9 77 3.5 2.0 2.8 2.4 117 chr2R 24520609 exon Ir60d + chr2R 24520668 exon Ir60d + chr2R 24520726 exon Ir60d + chr2R_9_24520001 chr2R_24520001 RAL-884 510 chr2R 24590111 24590145 chr2R 24590203 24590224 10 88 5.0 5.0 5.0 1.7 113 chr2R 24590111 intron pio + chr2R 24590168 intron pio + chr2R 24590224 intron pio + chr2R_10_24590001 chr2R_24590001 RAL-884 511 chr2R 24707716 24707728 chr2R 24707981 24707993 4 265 3.0 2.0 2.5 1.1 277 chr2R 24707716 intron Mid1 - chr2R 24707854 intron Mid1 - chr2R 24707993 intron Mid1 - chr2R_4_24705001 chr2R_24705001 RAL-884 512 chr2R 24722381 24722394 chr2R 24722463 24722476 4 82 0.5 7.5 4.0 0.8 95 chr2R 24722381 intron Mid1 - chr2R 24722428 intron Mid1 - chr2R 24722476 intron Mid1 - chr2R_4_24720001 chr2R_24720001 RAL-884 513 chr2R 24727882 24727916 chr2R 24735390 24735391 mdg1 11 7502 2.5 4.0 3.2 2.6 7509 chr2R 24727882 intron Mid1 - chr2R 24731636 intron Mid1 - chr2R 24735391 intron Mid1 - chr2R_11_24730001 chr2R_24730001 RAL-884 514 chr2R 24763611 24763641 chr2R 24765585 24765595 G2 7 1971 6.0 4.5 5.2 1.1 1984 chr2R 24763611 exon CG3894 + chr2R 24764603 intron CG3894 + chr2R 24765595 exon CG3894 + chr2R_7_24760001 chr2R_24760001 RAL-884 515 chr2R 24805716 24805752 chr2R 24805805 24805834 8 84 2.5 4.5 3.5 1.8 118 chr2R 24805716 intergenic not near genes chr2R 24805775 intergenic not near genes chr2R 24805834 intergenic not near genes chr2R_8_24805001 chr2R_24805001 RAL-884 516 chr2R 24859848 24859863 chr2R 24859931 24859949 4 85 2.0 1.0 1.5 1.6 101 chr2R 24859848 5` UTR CR44829 + chr2R 24859898 5` UTR CR44829 + chr2R 24859949 5` UTR CR44829 + chr2R_4_24855001 chr2R_24855001 RAL-884 517 chr2R 25004891 25004924 chr2R 25004969 25005002 10 75 3.0 1.0 2.0 3.3 111 chr2R 25004891 intron zip - chr2R 25004946 intron zip - chr2R 25005002 intron zip - chr2R_10_25000001 chr2R_25000001 RAL-884 518 chr2R 25014551 25014562 chr2R 25014624 25014637 5 74 6.0 3.0 4.5 0.9 86 chr2R 25014551 intron uzip + chr2R 25014594 intron uzip + chr2R 25014637 intron uzip + chr2R_5_25010001 chr2R_25010001 RAL-884 519 chr2R 25018342 25018371 chr2R 25018440 25018472 9 99 3.5 3.0 3.2 2.1 130 chr2R 25018342 intron uzip + chr2R 25018407 intron uzip + chr2R 25018472 intron uzip + chr2R_9_25015001 chr2R_25015001 RAL-884 520 chr2R 25101286 25101305 chr2R 25101387 25101403 4 101 1.0 2.5 1.8 1.4 117 chr2R 25101286 intron lov - chr2R 25101344 intron lov - chr2R 25101403 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-884 521 chr2R 25122970 25122977 chr2R 25123044 25123055 4 77 3.0 1.5 2.2 1.2 85 chr2R 25122970 intron lov - chr2R 25123012 intron lov - chr2R 25123055 intron lov - chr2R_4_25120001 chr2R_25120001 RAL-884 522 chr2R 25180772 25180793 chr2R 25180849 25180870 5 76 0.5 2.0 1.2 2.3 98 chr2R 25180772 intergenic not near genes chr2R 25180821 intergenic not near genes chr2R 25180870 intergenic not near genes chr2R_5_25180001 chr2R_25180001 RAL-884 523 chr2R 25253449 25253474 chr2R 25253525 25253550 5 72 5.0 3.5 4.2 1.0 101 chr2R 25253449 intron,intron CG9380 -,CG30428 + chr2R 25253500 intron,intron CG9380 -,CG30428 + chr2R 25253550 intron,intron CG9380 -,CG30428 + chr2R_5_25250001 chr2R_25250001 RAL-884 524 chr3L 52912 52933 chr3L 52996 53003 4 80 1.0 1.5 1.2 1.8 91 chr3L 52912 intergenic not near genes chr3L 52958 intergenic not near genes chr3L 53003 intergenic not near genes chr3L_4_50001 chr3L_50001 RAL-884 525 chr3L 68995 69015 chr3L 69070 69102 6 84 3.5 5.0 4.2 1.2 107 chr3L 68995 3` UTR Lsp1gamma + chr3L 69048 intergenic Lsp1gamma +,CR44510 + chr3L 69102 intergenic CR44510 +,Lsp1gamma + chr3L_6_65001 chr3L_65001 RAL-884 526 chr3L 110222 110244 chr3L 119389 119411 roo 4 9166 3.0 8.0 5.5 0.6 9189 chr3L 110222 intergenic not near genes chr3L 114816 intergenic not near genes chr3L 119411 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-884 527 chr3L 402696 402716 chr3L 409745 409769 297 10 7051 2.5 2.0 2.2 3.1 7073 chr3L 402696 intergenic not near genes chr3L 406232 intergenic not near genes chr3L 409769 intergenic not near genes chr3L_10_405001 chr3L_405001 RAL-884 528 chr3L 649711 649736 chr3L 649803 649817 6 84 3.0 3.0 3.0 1.5 106 chr3L 649711 intron Gale + chr3L 649764 intron Gale + chr3L 649817 intron Gale + chr3L_6_645001 chr3L_645001 RAL-884 529 chr3L 665867 665880 chr3L 665949 665963 5 82 5.0 2.0 3.5 1.1 96 chr3L 665867 intergenic not near genes chr3L 665915 intergenic not near genes chr3L 665963 intergenic not near genes chr3L_5_665001 chr3L_665001 RAL-884 530 chr3L 705256 705261 chr3L 705332 705337 4 76 5.5 2.0 3.8 0.8 81 chr3L 705256 intergenic CR44514 + chr3L 705296 intergenic CR44514 + chr3L 705337 5` UTR CR44514 + chr3L_4_705001 chr3L_705001 RAL-884 531 chr3L 843724 843741 chr3L 843805 843822 7 81 7.5 0.0 3.8 1.5 98 chr3L 843724 intergenic Gr61a +,CG13889 + chr3L 843773 intergenic Gr61a +,CG13889 + chr3L 843822 intergenic CG13889 +,Gr61a + chr3L_7_840001 chr3L_840001 RAL-884 532 chr3L 858013 858029 chr3L 866479 866508 Tirant 4 8470 2.0 3.5 2.8 1.1 8495 chr3L 858013 intergenic not near genes chr3L 862260 intergenic not near genes chr3L 866508 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-884 533 chr3L 904242 904257 chr3L 904324 904340 5 81 3.0 2.0 2.5 1.4 98 chr3L 904242 intergenic CG13905 + chr3L 904291 intergenic CG13905 + chr3L 904340 intergenic not near genes chr3L_5_900001 chr3L_900001 RAL-884 534 chr3L 925178 925210 chr3L 932602 932635 mdg1 18 7423 7.0 6.0 6.5 2.4 7457 chr3L 925178 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932635 intron Glut1 + chr3L_18_925001 chr3L_925001 RAL-884 535 chr3L 925092 925104 chr3L 932894 932923 mdg1 9 7808 17.5 16.0 16.8 0.5 7831 chr3L 925092 intron Glut1 + chr3L 929008 intron Glut1 + chr3L 932923 intron Glut1 + chr3L_9_925001 chr3L_925001 RAL-884 536 chr3L 933871 933910 chr3L 933997 934032 8 123 0.0 2.5 1.2 3.6 161 chr3L 933871 intron Glut1 + chr3L 933952 intron Glut1 + chr3L 934032 intron Glut1 + chr3L_8_930001 chr3L_930001 RAL-884 537 chr3L 958317 958340 chr3L 958399 958424 6 80 4.5 3.5 4.0 1.2 107 chr3L 958317 intron Glut1 + chr3L 958370 intron Glut1 + chr3L 958424 intron Glut1 + chr3L_6_955001 chr3L_955001 RAL-884 538 chr3L 1003057 1003077 chr3L 1003134 1003135 8 74 3.0 3.0 3.0 2.0 78 chr3L 1003057 intron trio - chr3L 1003096 intron trio - chr3L 1003135 intron trio - chr3L_8_1000001 chr3L_1000001 RAL-884 539 chr3L 1103997 1104005 chr3L 1104182 1104196 4 189 5.0 3.5 4.2 0.8 199 chr3L 1103997 intergenic not near genes chr3L 1104096 intergenic not near genes chr3L 1104196 intergenic not near genes chr3L_4_1100001 chr3L_1100001 RAL-884 540 chr3L 1109634 1109667 chr3L 1109722 1109725 11 79 1.5 3.0 2.2 3.4 91 chr3L 1109634 intergenic not near genes chr3L 1109680 intergenic not near genes chr3L 1109725 intergenic not near genes chr3L_11_1105001 chr3L_1105001 RAL-884 541 chr3L 1154134 1154144 chr3L 1163279 1163293 roo 4 9148 2.5 1.0 1.8 1.4 9159 chr3L 1154134 intron bab2 - chr3L 1158714 intron bab2 - chr3L 1163293 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-884 542 chr3L 1219597 1219625 chr3L 1227330 1227356 412 9 7731 4.5 5.0 4.8 1.6 7759 chr3L 1219597 intron mwh + chr3L 1223476 intron mwh + chr3L 1227356 intron mwh + chr3L_9_1220001 chr3L_1220001 RAL-884 543 chr3L 1310983 1310991 chr3L 1315843 1315875 18 4867 28.5 36.5 32.5 0.5 4892 chr3L 1310983 exon CG2469 + chr3L 1313429 intergenic CG9186 -,CG9153 + chr3L 1315875 exon CG9153 + chr3L_18_1310001 chr3L_1310001 RAL-884 544 chr3L 1347156 1347192 chr3L 1347241 1347277 8 83 1.5 4.0 2.8 2.1 121 chr3L 1347156 intron Ptp61F - chr3L 1347216 intron Ptp61F - chr3L 1347277 intron Ptp61F - chr3L_8_1345001 chr3L_1345001 RAL-884 545 chr3L 1415780 1415805 chr3L 1415861 1415886 6 78 1.5 6.5 4.0 1.2 106 chr3L 1415780 intron Ptp61F - chr3L 1415833 intron Ptp61F - chr3L 1415886 intron Ptp61F - chr3L_6_1415001 chr3L_1415001 RAL-884 546 chr3L 1463421 1463446 chr3L 1463502 1463508 11 76 5.5 7.5 6.5 1.5 87 chr3L 1463421 intron Ptp61F - chr3L 1463464 intron Ptp61F - chr3L 1463508 intron Ptp61F - chr3L_11_1460001 chr3L_1460001 RAL-884 547 chr3L 1506020 1506030 chr3L 1513606 1513627 17.6 4 7592 4.5 2.5 3.5 0.9 7607 chr3L 1506020 intron,intron Psa +,cue - chr3L 1509824 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-884 548 chr3L 1581167 1581183 chr3L 1581484 1581492 6 320 0.5 3.0 1.8 2.1 325 chr3L 1581167 intron CG13917 + chr3L 1581330 intron CG13917 + chr3L 1581492 intron CG13917 + chr3L_6_1580001 chr3L_1580001 RAL-884 549 chr3L 1993070 1993105 chr3L 1993153 1993188 4 83 1.0 0.5 0.8 2.2 118 chr3L 1993070 intergenic not near genes chr3L 1993129 intergenic not near genes chr3L 1993188 intergenic not near genes chr3L_4_1990001 chr3L_1990001 RAL-884 550 chr3L 2139205 2139227 chr3L 2139286 2139308 12 80 3.5 4.0 3.8 2.5 103 chr3L 2139205 intron zormin - chr3L 2139256 intron zormin - chr3L 2139308 intron zormin - chr3L_12_2135001 chr3L_2135001 RAL-884 551 chr3L 2168773 2168808 chr3L 2168863 2168884 8 88 3.0 3.5 3.2 1.9 111 chr3L 2168773 exon CG15879 - chr3L 2168828 intron CG15879 - chr3L 2168884 intron CG15879 - chr3L_8_2165001 chr3L_2165001 RAL-884 552 chr3L 2187612 2187639 chr3L 2187694 2187722 4 76 2.0 4.0 3.0 1.0 110 chr3L 2187612 exon CG13810 + chr3L 2187667 3` UTR CG13810 + chr3L 2187722 intergenic CG13810 + chr3L_4_2185001 chr3L_2185001 RAL-884 553 chr3L 2331585 2331613 chr3L 2331662 2331673 6 74 2.0 2.0 2.0 2.0 88 chr3L 2331585 intron MsR1 + chr3L 2331629 intron MsR1 + chr3L 2331673 intron MsR1 + chr3L_6_2330001 chr3L_2330001 RAL-884 554 chr3L 2382703 2382718 chr3L 2382785 2382786 6 80 5.0 3.0 4.0 1.2 83 chr3L 2382703 intergenic not near genes chr3L 2382744 intergenic not near genes chr3L 2382786 intergenic not near genes chr3L_6_2380001 chr3L_2380001 RAL-884 555 chr3L 2382723 2382733 chr3L 2382783 2382815 5 78 2.0 2.5 2.2 1.6 92 chr3L 2382723 intergenic not near genes chr3L 2382769 intergenic not near genes chr3L 2382815 intergenic not near genes chr3L_5_2380001 chr3L_2380001 RAL-884 556 chr3L 2447505 2447537 chr3L 2456660 2456680 roo 9 9142 3.5 5.0 4.2 1.7 9175 chr3L 2447505 intron CG45186 + chr3L 2452092 intron CG45186 + chr3L 2456680 intron CG45186 + chr3L_9_2450001 chr3L_2450001 RAL-884 557 chr3L 2517780 2517799 chr3L 2517909 2517936 8 133 7.5 1.5 4.5 1.5 156 chr3L 2517780 intron,5` UTR Spn -,CR45170 + chr3L 2517858 intron,5` UTR Spn -,CR45170 + chr3L 2517936 intron,5` UTR Spn -,CR45170 + chr3L_8_2515001 chr3L_2515001 RAL-884 558 chr3L 2533649 2533684 chr3L 2533731 2533744 8 75 3.0 2.5 2.8 2.1 95 chr3L 2533649 intron Spn - chr3L 2533696 intron Spn - chr3L 2533744 intron Spn - chr3L_8_2530001 chr3L_2530001 RAL-884 559 chr3L 2561530 2561558 chr3L 2561607 2561635 8 76 2.0 1.5 1.8 2.9 105 chr3L 2561530 intron msn - chr3L 2561582 intron msn - chr3L 2561635 intron msn - chr3L_8_2560001 chr3L_2560001 RAL-884 560 chr3L 2683656 2683947 chr3L 2683770 2684023 9 109 6.0 2.0 4.0 1.8 367 chr3L 2683656 intron Fife - chr3L 2683840 intron Fife - chr3L 2684023 intron Fife - chr3L_9_2680001 chr3L_2680001 RAL-884 561 chr3L 2927846 2927870 chr3L 2936121 2936147 Tirant 4 8276 2.5 0.0 1.2 1.8 8301 chr3L 2927846 intron Shab + chr3L 2931996 intron Shab + chr3L 2936147 intron Shab + chr3L_4_2930001 chr3L_2930001 RAL-884 562 chr3L 2966015 2966036 chr3L 2966097 2966118 7 82 1.5 3.0 2.2 2.2 103 chr3L 2966015 intergenic not near genes chr3L 2966066 intergenic not near genes chr3L 2966118 intergenic not near genes chr3L_7_2965001 chr3L_2965001 RAL-884 563 chr3L 3281445 3281456 chr3L 3281941 3281946 Doc 4 494 5.5 4.5 5.0 0.7 501 chr3L 3281445 intron CG12017 + chr3L 3281696 intron CG12017 + chr3L 3281946 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-884 564 chr3L 3281458 3281472 chr3L 3281933 3281968 Doc 9 491 4.5 4.0 4.2 1.7 510 chr3L 3281458 intron CG12017 + chr3L 3281713 intron CG12017 + chr3L 3281968 intron CG12017 + chr3L_9_3280001 chr3L_3280001 RAL-884 565 chr3L 3341268 3341298 chr3L 3341348 3341378 10 80 1.5 3.5 2.5 2.9 110 chr3L 3341268 intron kst + chr3L 3341323 intron kst + chr3L 3341378 intron kst + chr3L_10_3340001 chr3L_3340001 RAL-884 566 chr3L 3475073 3475111 chr3L 3475517 3475545 jockey 11 438 0.0 6.5 3.2 2.6 472 chr3L 3475073 intron CG42324 + chr3L 3475309 intron CG42324 + chr3L 3475545 intron CG42324 + chr3L_11_3475001 chr3L_3475001 RAL-884 567 chr3L 3601308 3601332 chr3L 3606610 3606640 copia 9 5306 1.0 3.0 2.0 3.0 5332 chr3L 3601308 intron Eip63E + chr3L 3603974 intron Eip63E + chr3L 3606640 intron Eip63E + chr3L_9_3600001 chr3L_3600001 RAL-884 568 chr3L 3763757 3763777 chr3L 3763838 3763842 4 73 2.0 0.0 1.0 2.0 85 chr3L 3763757 intron CG32264 - chr3L 3763800 intron CG32264 - chr3L 3763842 intron CG32264 - chr3L_4_3760001 chr3L_3760001 RAL-884 569 chr3L 3793035 3793048 chr3L 3793174 3793187 5 139 0.5 0.5 0.5 3.3 152 chr3L 3793035 intron CG32264 - chr3L 3793111 intron CG32264 - chr3L 3793187 intron CG32264 - chr3L_5_3790001 chr3L_3790001 RAL-884 570 chr3L 3797240 3797266 chr3L 3797321 3797349 4 80 1.5 0.5 1.0 2.0 109 chr3L 3797240 intron CG32264 - chr3L 3797294 intron CG32264 - chr3L 3797349 intron CG32264 - chr3L_4_3795001 chr3L_3795001 RAL-884 571 chr3L 3833739 3833762 chr3L 3833980 3834003 pogo 4 238 2.5 1.0 1.8 1.4 264 chr3L 3833739 intron enc + chr3L 3833871 intron enc + chr3L 3834003 intron enc + chr3L_4_3830001 chr3L_3830001 RAL-884 572 chr3L 3866618 3866634 chr3L 3870028 3870044 7 3410 9.5 16.0 12.8 0.5 3426 chr3L 3866618 intergenic not near genes chr3L 3868331 intergenic not near genes chr3L 3870044 intergenic not near genes chr3L_7_3865001 chr3L_3865001 RAL-884 573 chr3L 3890970 3890993 chr3L 3891043 3891074 6 78 2.0 0.0 1.0 3.0 104 chr3L 3890970 intergenic not near genes chr3L 3891022 intergenic not near genes chr3L 3891074 intergenic not near genes chr3L_6_3890001 chr3L_3890001 RAL-884 574 chr3L 4195149 4195167 chr3L 4195241 4195271 5 96 5.0 4.5 4.8 0.9 122 chr3L 4195149 exon CG43367 + chr3L 4195210 intron CG43367 + chr3L 4195271 intron CG43367 + chr3L_5_4195001 chr3L_4195001 RAL-884 575 chr3L 4303119 4303145 chr3L 4303230 4303256 7 110 1.0 5.0 3.0 1.8 137 chr3L 4303119 intron dyl - chr3L 4303188 intron dyl - chr3L 4303256 intron dyl - chr3L_7_4300001 chr3L_4300001 RAL-884 576 chr3L 4397446 4397469 chr3L 4397573 4397599 4 129 4.0 1.5 2.8 1.1 153 chr3L 4397446 intron slow + chr3L 4397522 intron slow + chr3L 4397599 intron slow + chr3L_4_4395001 chr3L_4395001 RAL-884 577 chr3L 4520804 4520833 chr3L 4520983 4520985 4 161 2.5 0.0 1.2 1.8 181 chr3L 4520804 intron Tie - chr3L 4520894 intron Tie - chr3L 4520985 intron Tie - chr3L_4_4520001 chr3L_4520001 RAL-884 578 chr3L 4604874 4604899 chr3L 4604983 4605009 6 110 3.5 2.0 2.8 1.6 135 chr3L 4604874 intron Src64B - chr3L 4604942 intron Src64B - chr3L 4605009 intron Src64B - chr3L_6_4600001 chr3L_4600001 RAL-884 579 chr3L 4652578 4652600 chr3L 4652661 4652683 7 82 2.5 2.0 2.2 2.2 105 chr3L 4652578 intron axo - chr3L 4652630 intron axo - chr3L 4652683 intron axo - chr3L_7_4650001 chr3L_4650001 RAL-884 580 chr3L 4676822 4676832 chr3L 4676982 4677000 4 162 3.5 2.0 2.8 1.1 178 chr3L 4676822 intron axo - chr3L 4676911 intron axo - chr3L 4677000 intron axo - chr3L_4_4675001 chr3L_4675001 RAL-884 581 chr3L 4748702 4748731 chr3L 4748793 4748798 8 88 3.5 1.0 2.2 2.5 96 chr3L 4748702 intron RhoGEF64C + chr3L 4748750 intron RhoGEF64C + chr3L 4748798 intron RhoGEF64C + chr3L_8_4745001 chr3L_4745001 RAL-884 582 chr3L 4858316 4858335 chr3L 4858402 4858424 5 88 3.5 8.0 5.8 0.7 108 chr3L 4858316 intergenic not near genes chr3L 4858370 intergenic not near genes chr3L 4858424 intergenic not near genes chr3L_5_4855001 chr3L_4855001 RAL-884 583 chr3L 4901136 4901160 chr3L 4907317 4907324 diver 5 6179 0.5 4.5 2.5 1.4 6188 chr3L 4901136 intergenic CG13704 + chr3L 4904230 intergenic not near genes chr3L 4907324 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-884 584 chr3L 4907976 4907989 chr3L 4908052 4908065 5 76 0.5 0.5 0.5 3.3 89 chr3L 4907976 intergenic not near genes chr3L 4908020 intergenic not near genes chr3L 4908065 intergenic not near genes chr3L_5_4905001 chr3L_4905001 RAL-884 585 chr3L 4992923 4992932 chr3L 4993107 4993116 4 184 3.5 3.5 3.5 0.9 193 chr3L 4992923 intron Con - chr3L 4993020 intron Con - chr3L 4993116 intron Con - chr3L_4_4990001 chr3L_4990001 RAL-884 586 chr3L 5013436 5013466 chr3L 5013587 5013597 8 147 1.5 1.5 1.5 3.2 161 chr3L 5013436 intron Con - chr3L 5013516 intron Con - chr3L 5013597 intron Con - chr3L_8_5010001 chr3L_5010001 RAL-884 587 chr3L 5104491 5104505 chr3L 5124625 5124638 5 20134 1.0 3.5 2.2 1.6 20147 chr3L 5104491 intergenic not near genes chr3L 5114564 intergenic not near genes chr3L 5124638 intergenic not near genes chr3L_5_5110001 chr3L_5110001 RAL-884 588 chr3L 5333276 5333307 chr3L 5333708 5333739 8 423 0.0 1.5 0.8 4.4 463 chr3L 5333276 intergenic not near genes chr3L 5333508 intergenic not near genes chr3L 5333739 intergenic not near genes chr3L_8_5330001 chr3L_5330001 RAL-884 589 chr3L 5339826 5339845 chr3L 5340070 5340085 6 242 3.5 1.0 2.2 1.9 259 chr3L 5339826 intergenic not near genes chr3L 5339956 intergenic not near genes chr3L 5340085 intergenic not near genes chr3L_6_5335001 chr3L_5335001 RAL-884 590 chr3L 5388212 5388225 chr3L 5388526 5388549 7 319 7.0 3.0 5.0 1.2 337 chr3L 5388212 intergenic not near genes chr3L 5388380 intergenic not near genes chr3L 5388549 intergenic not near genes chr3L_7_5385001 chr3L_5385001 RAL-884 591 chr3L 5449537 5449562 chr3L 5449616 5449641 4 78 1.0 1.5 1.2 1.8 104 chr3L 5449537 intergenic not near genes chr3L 5449589 intergenic not near genes chr3L 5449641 intergenic not near genes chr3L_4_5445001 chr3L_5445001 RAL-884 592 chr3L 5485052 5485067 chr3L 5485134 5485149 4 82 1.5 2.5 2.0 1.3 97 chr3L 5485052 intergenic not near genes chr3L 5485100 intergenic not near genes chr3L 5485149 intergenic not near genes chr3L_4_5485001 chr3L_5485001 RAL-884 593 chr3L 5486050 5486260 chr3L 5486140 5486328 14 82 3.0 3.0 3.0 3.5 278 chr3L 5486050 intergenic not near genes chr3L 5486189 intergenic not near genes chr3L 5486328 intergenic not near genes chr3L_14_5485001 chr3L_5485001 RAL-884 594 chr3L 5788702 5788742 chr3L 5788783 5788821 6 77 0.0 2.0 1.0 3.0 119 chr3L 5788702 intergenic not near genes chr3L 5788762 intergenic not near genes chr3L 5788821 intergenic not near genes chr3L_6_5785001 chr3L_5785001 RAL-884 595 chr3L 5926321 5926334 chr3L 5926504 5926507 BS 4 179 4.5 4.5 4.5 0.7 186 chr3L 5926321 intron Vap-33B + chr3L 5926414 intron Vap-33B + chr3L 5926507 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-884 596 chr3L 5926339 5926346 chr3L 5926503 5926526 BS 6 177 3.0 4.5 3.8 1.2 187 chr3L 5926339 intron Vap-33B + chr3L 5926432 intron Vap-33B + chr3L 5926526 intron Vap-33B + chr3L_6_5925001 chr3L_5925001 RAL-884 597 chr3L 5926349 5926351 chr3L 5926502 5926506 BS 5 168 2.5 4.5 3.5 1.1 157 chr3L 5926349 intron Vap-33B + chr3L 5926428 intron Vap-33B + chr3L 5926506 intron Vap-33B + chr3L_5_5925001 chr3L_5925001 RAL-884 598 chr3L 5987042 5987160 chr3L 5987122 5987242 9 85 0.0 0.0 0.0 9.0 200 chr3L 5987042 intergenic not near genes chr3L 5987142 intergenic not near genes chr3L 5987242 intergenic not near genes chr3L_9_5985001 chr3L_5985001 RAL-884 599 chr3L 6001679 6001709 chr3L 6004379 6004409 jockey 5 2697 2.0 0.5 1.2 2.3 2730 chr3L 6001679 intron PVRAP + chr3L 6003044 intron PVRAP + chr3L 6004409 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-884 600 chr3L 6008494 6008504 chr3L 6008571 6008582 4 78 1.5 4.0 2.8 1.1 88 chr3L 6008494 intron PVRAP + chr3L 6008538 intron PVRAP + chr3L 6008582 intron PVRAP + chr3L_4_6005001 chr3L_6005001 RAL-884 601 chr3L 6052657 6052667 chr3L 6052733 6052749 4 81 3.5 5.0 4.2 0.8 92 chr3L 6052657 exon Jon65Aii + chr3L 6052703 intron Jon65Aii + chr3L 6052749 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-884 602 chr3L 6185603 6185632 chr3L 6185681 6185710 5 78 2.0 3.5 2.8 1.3 107 chr3L 6185603 exon CG43293 + chr3L 6185656 intron CG43293 + chr3L 6185710 exon CG43293 + chr3L_5_6185001 chr3L_6185001 RAL-884 603 chr3L 6220920 6220945 chr3L 6230067 6230092 roo 6 9150 2.5 6.0 4.2 1.2 9172 chr3L 6220920 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230092 intergenic not near genes chr3L_6_6225001 chr3L_6225001 RAL-884 604 chr3L 6335035 6335043 chr3L 6335490 6335514 297 4 466 0.5 4.0 2.2 1.2 479 chr3L 6335035 intron CG13300 - chr3L 6335274 intron CG13300 - chr3L 6335514 intron CG13300 - chr3L_4_6335001 chr3L_6335001 RAL-884 605 chr3L 6623477 6623503 chr3L 6623573 6623586 5 92 2.5 3.0 2.8 1.3 109 chr3L 6623477 intergenic not near genes chr3L 6623532 intergenic GluRIA + chr3L 6623586 intergenic GluRIA + chr3L_5_6620001 chr3L_6620001 RAL-884 606 chr3L 6668965 6668998 chr3L 6669046 6669079 5 77 1.0 0.0 0.5 3.3 114 chr3L 6668965 intergenic not near genes chr3L 6669022 intergenic not near genes chr3L 6669079 intergenic not near genes chr3L_5_6665001 chr3L_6665001 RAL-884 607 chr3L 6767809 6767835 chr3L 6767901 6767923 7 87 1.0 2.0 1.5 2.8 114 chr3L 6767809 intergenic not near genes chr3L 6767866 intergenic not near genes chr3L 6767923 intergenic not near genes chr3L_7_6765001 chr3L_6765001 RAL-884 608 chr3L 6855935 6855952 chr3L 6860718 6860733 Doc 4 4783 1.5 4.0 2.8 1.1 4798 chr3L 6855935 intergenic not near genes chr3L 6858334 intergenic not near genes chr3L 6860733 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-884 609 chr3L 6934337 6934364 chr3L 6934448 6934475 4 111 1.5 1.5 1.5 1.6 138 chr3L 6934337 exon CG14820 + chr3L 6934406 intron CG14820 + chr3L 6934475 intron CG14820 + chr3L_4_6930001 chr3L_6930001 RAL-884 610 chr3L 7244934 7244964 chr3L 7245025 7245055 6 88 3.0 3.5 3.2 1.4 121 chr3L 7244934 exon mei-P22 + chr3L 7244994 exon mei-P22 + chr3L 7245055 exon mei-P22 + chr3L_6_7240001 chr3L_7240001 RAL-884 611 chr3L 7263332 7263360 chr3L 7263418 7263449 5 84 7.5 0.5 4.0 1.0 117 chr3L 7263332 intron CG14830 - chr3L 7263390 intron CG14830 - chr3L 7263449 intron CG14830 - chr3L_5_7260001 chr3L_7260001 RAL-884 612 chr3L 7276162 7276170 chr3L 7276239 7276247 4 77 2.5 0.5 1.5 1.6 85 chr3L 7276162 intron unc-13-4A - chr3L 7276204 intron unc-13-4A - chr3L 7276247 intron unc-13-4A - chr3L_4_7275001 chr3L_7275001 RAL-884 613 chr3L 7449441 7449456 chr3L 7449518 7449536 4 77 0.5 1.5 1.0 2.0 95 chr3L 7449441 intron CG42458 + chr3L 7449488 intron CG42458 + chr3L 7449536 intron CG42458 + chr3L_4_7445001 chr3L_7445001 RAL-884 614 chr3L 7498756 7498779 chr3L 7503533 7503556 F-element 5 4776 2.0 1.0 1.5 2.0 4800 chr3L 7498756 5` UTR CG8539 - chr3L 7501156 intergenic not near genes chr3L 7503556 intergenic not near genes chr3L_5_7500001 chr3L_7500001 RAL-884 615 chr3L 7505787 7505788 chr3L 7505851 7505876 4 74 17.5 10.0 13.8 0.3 89 chr3L 7505787 exon CG7548 - chr3L 7505832 exon CG7548 - chr3L 7505876 exon CG7548 - chr3L_4_7505001 chr3L_7505001 RAL-884 616 chr3L 7793719 7793742 chr3L 7800767 7800794 297 7 7050 2.5 2.5 2.5 2.0 7075 chr3L 7793719 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800794 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-884 617 chr3L 7801334 7801365 chr3L 7801427 7801458 5 92 3.0 1.0 2.0 1.7 124 chr3L 7801334 intron CG32369 - chr3L 7801396 intron CG32369 - chr3L 7801458 intron CG32369 - chr3L_5_7800001 chr3L_7800001 RAL-884 618 chr3L 7886517 7886545 chr3L 7889035 7889063 Stalker4 6 2517 2.0 1.0 1.5 2.4 2546 chr3L 7886517 intron CG32365 + chr3L 7887790 intron CG32365 + chr3L 7889063 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-884 619 chr3L 7985368 7985394 chr3L 7987693 7987722 NOF 8 2327 3.5 2.5 3.0 2.0 2354 chr3L 7985368 intron nmo + chr3L 7986545 intron nmo + chr3L 7987722 intron nmo + chr3L_8_7985001 chr3L_7985001 RAL-884 620 chr3L 8248310 8248336 chr3L 8248400 8248425 4 84 3.5 2.0 2.8 1.1 115 chr3L 8248310 intron Dscam4 + chr3L 8248368 intron Dscam4 + chr3L 8248425 intron Dscam4 + chr3L_4_8245001 chr3L_8245001 RAL-884 621 chr3L 8295802 8295818 chr3L 8295959 8295976 7 155 3.5 3.5 3.5 1.6 174 chr3L 8295802 intergenic CG7201 - chr3L 8295889 intergenic not near genes chr3L 8295976 intergenic not near genes chr3L_7_8295001 chr3L_8295001 RAL-884 622 chr3L 8498300 8498328 chr3L 8505764 8505795 blood 5 7457 1.0 1.0 1.0 2.5 7495 chr3L 8498300 intron CG43163 - chr3L 8502048 intron CG43163 - chr3L 8505795 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-884 623 chr3L 8643581 8643607 chr3L 8643656 8643683 5 75 1.5 2.0 1.8 1.8 102 chr3L 8643581 3` UTR Cpr66D + chr3L 8643632 intergenic Cpr66D + chr3L 8643683 intergenic Cpr66D + chr3L_5_8640001 chr3L_8640001 RAL-884 624 chr3L 8884403 8884422 chr3L 8884602 8884620 6 197 4.5 0.5 2.5 1.7 217 chr3L 8884403 intron dally + chr3L 8884512 intron dally + chr3L 8884620 intron dally + chr3L_6_8880001 chr3L_8880001 RAL-884 625 chr3L 8928269 8928287 chr3L 8928345 8928345 5 72 2.5 0.5 1.5 2.0 76 chr3L 8928269 intron Tsp66E + chr3L 8928307 intron Tsp66E + chr3L 8928345 intron Tsp66E + chr3L_5_8925001 chr3L_8925001 RAL-884 626 chr3L 8950556 8950581 chr3L 8950650 8950675 6 94 2.5 3.5 3.0 1.5 119 chr3L 8950556 intron,intron CG43783 -,orb2 - chr3L 8950616 intron,intron CG43783 -,orb2 - chr3L 8950675 intron,intron CG43783 -,orb2 - chr3L_6_8950001 chr3L_8950001 RAL-884 627 chr3L 9011133 9011150 chr3L 9011219 9011237 5 87 2.0 1.5 1.8 1.8 104 chr3L 9011133 intergenic not near genes chr3L 9011185 intergenic not near genes chr3L 9011237 intergenic not near genes chr3L_5_9010001 chr3L_9010001 RAL-884 628 chr3L 9076932 9076941 chr3L 9084492 9084500 412 4 7560 7.5 7.5 7.5 0.5 7568 chr3L 9076932 exon Tequila + chr3L 9080716 intron Tequila + chr3L 9084500 exon Tequila + chr3L_4_9080001 chr3L_9080001 RAL-884 629 chr3L 9130556 9130580 chr3L 9134317 9134335 412 6 3759 5.0 1.5 3.2 1.4 3779 chr3L 9130556 intergenic bol - chr3L 9132446 intergenic not near genes chr3L 9134335 intergenic Dhpr + chr3L_6_9130001 chr3L_9130001 RAL-884 630 chr3L 9164706 9164722 chr3L 9166173 9166189 hobo 4 1466 2.5 1.0 1.8 1.4 1483 chr3L 9164706 intron Rdl - chr3L 9165448 intron Rdl - chr3L 9166189 intron Rdl - chr3L_4_9165001 chr3L_9165001 RAL-884 631 chr3L 9359587 9359617 chr3L 9359678 9359708 6 90 0.5 0.5 0.5 4.0 121 chr3L 9359587 3` UTR CG32039 + chr3L 9359648 3` UTR CG32039 + chr3L 9359708 3` UTR CG32039 + chr3L_6_9355001 chr3L_9355001 RAL-884 632 chr3L 9443507 9443536 chr3L 9445298 9445299 S-element 6 1783 1.5 2.5 2.0 2.0 1792 chr3L 9443507 intron CG33926 + chr3L 9444403 intron CG33926 + chr3L 9445299 intron CG33926 + chr3L_6_9440001 chr3L_9440001 RAL-884 633 chr3L 9501703 9501732 chr3L 9502189 9502203 roo 8 484 0.0 3.5 1.8 2.9 500 chr3L 9501703 intron path - chr3L 9501953 intron path - chr3L 9502203 intron path - chr3L_8_9500001 chr3L_9500001 RAL-884 634 chr3L 9510910 9510955 chr3L 9511003 9511033 9 83 0.5 1.5 1.0 4.5 123 chr3L 9510910 intron RpS9 - chr3L 9510972 intron RpS9 - chr3L 9511033 intron RpS9 - chr3L_9_9510001 chr3L_9510001 RAL-884 635 chr3L 9571902 9571937 chr3L 9572250 9572285 jockey 4 346 1.5 0.5 1.0 2.0 383 chr3L 9571902 intron CG42673 + chr3L 9572094 intron CG42673 + chr3L 9572285 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-884 636 chr3L 9575910 9575944 chr3L 9580984 9581019 jockey 9 5076 5.0 4.0 4.5 1.6 5109 chr3L 9575910 intron CG42673 + chr3L 9578464 intron CG42673 + chr3L 9581019 intron CG42673 + chr3L_9_9575001 chr3L_9575001 RAL-884 637 chr3L 9918885 9918894 chr3L 9918980 9918989 4 94 5.0 3.0 4.0 0.8 104 chr3L 9918885 intron CG34356 + chr3L 9918937 intron CG34356 + chr3L 9918989 intron CG34356 + chr3L_4_9915001 chr3L_9915001 RAL-884 638 chr3L 9918895 9918911 chr3L 9918974 9919002 9 91 3.0 2.5 2.8 2.4 107 chr3L 9918895 intron CG34356 + chr3L 9918948 intron CG34356 + chr3L 9919002 intron CG34356 + chr3L_9_9915001 chr3L_9915001 RAL-884 639 chr3L 9951195 9951227 chr3L 9951282 9951314 5 84 1.0 2.5 1.8 1.8 119 chr3L 9951195 intron CG34356 + chr3L 9951254 intron CG34356 + chr3L 9951314 intron CG34356 + chr3L_5_9950001 chr3L_9950001 RAL-884 640 chr3L 10145061 10145079 chr3L 10145230 10145248 5 169 1.5 2.5 2.0 1.7 187 chr3L 10145061 intergenic not near genes chr3L 10145154 intergenic not near genes chr3L 10145248 intergenic not near genes chr3L_5_10145001 chr3L_10145001 RAL-884 641 chr3L 10161435 10161455 chr3L 10161510 10161530 9 75 2.5 4.0 3.2 2.1 95 chr3L 10161435 intron dpr10 - chr3L 10161482 intron dpr10 - chr3L 10161530 intron dpr10 - chr3L_9_10160001 chr3L_10160001 RAL-884 642 chr3L 10223297 10223323 chr3L 10223444 10223474 5 146 3.5 2.0 2.8 1.3 177 chr3L 10223297 intron scramb1 - chr3L 10223386 intron scramb1 - chr3L 10223474 intron scramb1 - chr3L_5_10220001 chr3L_10220001 RAL-884 643 chr3L 10308742 10308753 chr3L 10308819 10308830 4 77 4.0 4.5 4.2 0.8 88 chr3L 10308742 intergenic not near genes chr3L 10308786 intergenic not near genes chr3L 10308830 intergenic not near genes chr3L_4_10305001 chr3L_10305001 RAL-884 644 chr3L 10308754 10308774 chr3L 10308816 10308844 5 66 3.5 4.0 3.8 1.0 90 chr3L 10308754 intergenic not near genes chr3L 10308799 intergenic not near genes chr3L 10308844 intergenic not near genes chr3L_5_10305001 chr3L_10305001 RAL-884 645 chr3L 10314133 10314156 chr3L 10314214 10314235 4 82 1.0 1.5 1.2 1.8 102 chr3L 10314133 intergenic not near genes chr3L 10314184 intergenic not near genes chr3L 10314235 intergenic not near genes chr3L_4_10310001 chr3L_10310001 RAL-884 646 chr3L 10414955 10414979 chr3L 10417309 10417314 Doc 5 2359 0.5 2.0 1.2 2.3 2359 chr3L 10414955 intergenic CG12362 + chr3L 10416134 intergenic not near genes chr3L 10417314 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-884 647 chr3L 10417578 10417592 chr3L 10417647 10417669 6 73 7.5 1.5 4.5 1.1 91 chr3L 10417578 intergenic not near genes chr3L 10417624 intergenic not near genes chr3L 10417669 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-884 648 chr3L 10600458 10600468 chr3L 10600540 10600550 4 82 3.0 0.5 1.8 1.4 92 chr3L 10600458 intergenic not near genes chr3L 10600504 intergenic not near genes chr3L 10600550 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-884 649 chr3L 10912520 10912554 chr3L 10912602 10912637 4 83 0.0 0.0 0.0 4.0 117 chr3L 10912520 intergenic not near genes chr3L 10912578 intergenic not near genes chr3L 10912637 intergenic not near genes chr3L_4_10910001 chr3L_10910001 RAL-884 650 chr3L 10957028 10957035 chr3L 10957083 10957085 5 64 0.0 3.0 1.5 2.0 57 chr3L 10957028 intergenic not near genes chr3L 10957056 intergenic not near genes chr3L 10957085 intergenic not near genes chr3L_5_10955001 chr3L_10955001 RAL-884 651 chr3L 11076038 11076040 chr3L 11082137 11082164 5 6104 11.0 24.0 17.5 0.3 6126 chr3L 11076038 exon CG7839 + chr3L 11079101 3` UTR JIL-1 - chr3L 11082164 exon JIL-1 - chr3L_5_11075001 chr3L_11075001 RAL-884 652 chr3L 11249865 11249878 chr3L 11249948 11249961 4 83 1.5 1.5 1.5 1.6 96 chr3L 11249865 5` UTR CR44717 + chr3L 11249913 5` UTR CR44717 + chr3L 11249961 5` UTR CR44717 + chr3L_4_11245001 chr3L_11245001 RAL-884 653 chr3L 11264473 11264480 chr3L 11271425 11271432 17.6 4 6952 2.5 2.5 2.5 1.1 6959 chr3L 11264473 intergenic not near genes chr3L 11267952 intergenic not near genes chr3L 11271432 intergenic not near genes chr3L_4_11265001 chr3L_11265001 RAL-884 654 chr3L 11432907 11432940 chr3L 11432984 11433019 5 79 1.0 1.0 1.0 2.5 112 chr3L 11432907 intergenic not near genes chr3L 11432963 intergenic not near genes chr3L 11433019 intergenic not near genes chr3L_5_11430001 chr3L_11430001 RAL-884 655 chr3L 11579560 11579581 chr3L 11579665 11579687 7 104 3.0 1.5 2.2 2.2 127 chr3L 11579560 intergenic CG43390 - chr3L 11579624 intergenic CG43390 - chr3L 11579687 intergenic CG43390 - chr3L_7_11575001 chr3L_11575001 RAL-884 656 chr3L 11588749 11588755 chr3L 11588897 11588911 4 154 2.0 4.5 3.2 1.0 162 chr3L 11588749 intergenic not near genes chr3L 11588830 intergenic not near genes chr3L 11588911 intergenic not near genes chr3L_4_11585001 chr3L_11585001 RAL-884 657 chr3L 11715541 11715575 chr3L 11715628 11715647 10 80 2.0 1.0 1.5 4.0 106 chr3L 11715541 intergenic CG14132 - chr3L 11715594 intergenic CG14132 - chr3L 11715647 intergenic CG14132 - chr3L_10_11715001 chr3L_11715001 RAL-884 658 chr3L 11723085 11723109 chr3L 11727880 11727904 Doc 4 4795 2.5 1.5 2.0 1.3 4819 chr3L 11723085 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727904 3` UTR Bmcp + chr3L_4_11725001 chr3L_11725001 RAL-884 659 chr3L 11742580 11742613 chr3L 11742784 11742817 7 199 1.5 1.5 1.5 2.8 237 chr3L 11742580 intron CG6024 - chr3L 11742698 intron CG6024 - chr3L 11742817 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-884 660 chr3L 11744014 11744040 chr3L 11744122 11744148 6 108 3.5 0.0 1.8 2.1 134 chr3L 11744014 exon CG6024 - chr3L 11744081 intron CG6024 - chr3L 11744148 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-884 661 chr3L 11811460 11811487 chr3L 11811534 11811565 5 77 1.5 4.0 2.8 1.3 105 chr3L 11811460 intron CG42255 - chr3L 11811512 intron CG42255 - chr3L 11811565 exon CG42255 - chr3L_5_11810001 chr3L_11810001 RAL-884 662 chr3L 11864556 11864576 chr3L 11865850 11865855 pogo 4 1291 5.0 3.0 4.0 0.8 1299 chr3L 11864556 intron CG44837 - chr3L 11865206 intron CG44837 - chr3L 11865855 intron CG44837 - chr3L_4_11865001 chr3L_11865001 RAL-884 663 chr3L 11872658 11872689 chr3L 11873000 11873028 5 341 2.0 4.5 3.2 1.2 370 chr3L 11872658 intron CG44837 - chr3L 11872843 intron CG44837 - chr3L 11873028 intron CG44837 - chr3L_5_11870001 chr3L_11870001 RAL-884 664 chr3L 12013914 12013926 chr3L 12014004 12014017 4 90 3.0 1.5 2.2 1.2 103 chr3L 12013914 intron rols - chr3L 12013966 intron rols - chr3L 12014017 intron rols - chr3L_4_12010001 chr3L_12010001 RAL-884 665 chr3L 12034890 12034910 chr3L 12034962 12034975 4 72 4.5 2.0 3.2 1.0 85 chr3L 12034890 intron rols - chr3L 12034932 intron rols - chr3L 12034975 intron rols - chr3L_4_12030001 chr3L_12030001 RAL-884 666 chr3L 12300849 12300877 chr3L 12300988 12300995 7 133 1.5 5.0 3.2 1.7 146 chr3L 12300849 intergenic CR44550 + chr3L 12300922 intergenic CR44550 + chr3L 12300995 5` UTR CR44550 + chr3L_7_12300001 chr3L_12300001 RAL-884 667 chr3L 12304103 12304118 chr3L 12304168 12304194 5 69 0.5 7.5 4.0 1.0 91 chr3L 12304103 intergenic not near genes chr3L 12304148 intergenic not near genes chr3L 12304194 intergenic not near genes chr3L_5_12300001 chr3L_12300001 RAL-884 668 chr3L 12319742 12319766 chr3L 12319884 12319899 4 143 5.5 3.5 4.5 0.7 157 chr3L 12319742 intergenic not near genes chr3L 12319820 intergenic not near genes chr3L 12319899 intergenic not near genes chr3L_4_12315001 chr3L_12315001 RAL-884 669 chr3L 12369541 12369569 chr3L 12369631 12369659 6 90 1.5 0.5 1.0 3.0 118 chr3L 12369541 intron Ncc69 - chr3L 12369600 intron Ncc69 - chr3L 12369659 intron Ncc69 - chr3L_6_12365001 chr3L_12365001 RAL-884 670 chr3L 12788417 12788440 chr3L 12788537 12788560 6 119 1.0 1.5 1.2 2.7 143 chr3L 12788417 intron Atg1 - chr3L 12788488 intron Atg1 - chr3L 12788560 exon Atg1 - chr3L_6_12785001 chr3L_12785001 RAL-884 671 chr3L 12919278 12919308 chr3L 12924760 12924772 Rt1c 6 5475 5.5 1.5 3.5 1.3 5494 chr3L 12919278 intergenic not near genes chr3L 12922025 intergenic not near genes chr3L 12924772 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-884 672 chr3L 12928218 12928235 chr3L 12928345 12928362 4 127 2.5 2.0 2.2 1.2 144 chr3L 12928218 intergenic not near genes chr3L 12928290 intergenic not near genes chr3L 12928362 intergenic not near genes chr3L_4_12925001 chr3L_12925001 RAL-884 673 chr3L 12957805 12957813 chr3L 12962287 12962295 copia 6 4482 5.0 5.5 5.2 1.0 4490 chr3L 12957805 intergenic not near genes chr3L 12960050 intergenic not near genes chr3L 12962295 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-884 674 chr3L 12967140 12967152 chr3L 12967224 12967236 4 84 3.0 4.5 3.8 0.8 96 chr3L 12967140 exon Or69a - chr3L 12967188 exon Or69a - chr3L 12967236 exon Or69a - chr3L_4_12965001 chr3L_12965001 RAL-884 675 chr3L 12967156 12967162 chr3L 12967219 12967227 5 74 2.0 4.0 3.0 1.2 71 chr3L 12967156 exon Or69a - chr3L 12967192 exon Or69a - chr3L 12967227 exon Or69a - chr3L_5_12965001 chr3L_12965001 RAL-884 676 chr3L 13007718 13007727 chr3L 13007810 13007819 4 90 0.5 0.5 0.5 2.7 101 chr3L 13007718 3` UTR CG11263 + chr3L 13007768 3` UTR CG11263 + chr3L 13007819 3` UTR CG11263 + chr3L_4_13005001 chr3L_13005001 RAL-884 677 chr3L 13031586 13031607 chr3L 13031672 13031674 5 80 0.5 3.0 1.8 1.8 88 chr3L 13031586 intron CG17672 + chr3L 13031630 intron CG17672 + chr3L 13031674 intron CG17672 + chr3L_5_13030001 chr3L_13030001 RAL-884 678 chr3L 13034474 13034495 chr3L 13034549 13034575 8 68 3.5 5.5 4.5 1.5 101 chr3L 13034474 intron CG17672 + chr3L 13034524 intron CG17672 + chr3L 13034575 intron CG17672 + chr3L_8_13030001 chr3L_13030001 RAL-884 679 chr3L 13110707 13110741 chr3L 13110795 13110811 10 83 2.0 3.5 2.8 2.6 104 chr3L 13110707 intergenic not near genes chr3L 13110759 intergenic not near genes chr3L 13110811 intergenic not near genes chr3L_10_13110001 chr3L_13110001 RAL-884 680 chr3L 13142155 13142174 chr3L 13142267 13142280 4 110 0.5 3.5 2.0 1.3 125 chr3L 13142155 intergenic not near genes chr3L 13142218 intergenic not near genes chr3L 13142280 intergenic not near genes chr3L_4_13140001 chr3L_13140001 RAL-884 681 chr3L 13265189 13265214 chr3L 13265266 13265267 9 75 0.5 2.5 1.5 3.6 78 chr3L 13265189 5` UTR caps + chr3L 13265228 5` UTR caps + chr3L 13265267 5` UTR caps + chr3L_9_13265001 chr3L_13265001 RAL-884 682 chr3L 13267296 13267318 chr3L 13267396 13267415 6 105 2.5 0.5 1.5 2.4 119 chr3L 13267296 intron caps + chr3L 13267356 intron caps + chr3L 13267415 intron caps + chr3L_6_13265001 chr3L_13265001 RAL-884 683 chr3L 13338644 13338655 chr3L 13338713 13338732 4 75 1.5 1.5 1.5 1.6 88 chr3L 13338644 intergenic not near genes chr3L 13338688 intergenic not near genes chr3L 13338732 intergenic not near genes chr3L_4_13335001 chr3L_13335001 RAL-884 684 chr3L 13525154 13525190 chr3L 13532950 13532984 roo 10 7792 4.0 3.5 3.8 2.1 7830 chr3L 13525154 intergenic not near genes chr3L 13529069 intergenic not near genes chr3L 13532984 intergenic not near genes chr3L_10_13525001 chr3L_13525001 RAL-884 685 chr3L 13703660 13703673 chr3L 13703736 13703750 4 76 3.0 1.5 2.2 1.2 90 chr3L 13703660 intron bru-3 - chr3L 13703705 intron bru-3 - chr3L 13703750 intron bru-3 - chr3L_4_13700001 chr3L_13700001 RAL-884 686 chr3L 13754426 13754451 chr3L 13754502 13754528 6 72 2.5 1.5 2.0 2.0 102 chr3L 13754426 intron bru-3 - chr3L 13754477 intron bru-3 - chr3L 13754528 intron bru-3 - chr3L_6_13750001 chr3L_13750001 RAL-884 687 chr3L 13804547 13804573 chr3L 13822831 13822858 roo 6 18285 2.5 1.5 2.0 2.0 18311 chr3L 13804547 intergenic not near genes chr3L 13813702 intergenic not near genes chr3L 13822858 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-884 688 chr3L 13871751 13871761 chr3L 13871811 13871839 5 74 2.5 2.0 2.2 1.6 88 chr3L 13871751 3` UTR dysc - chr3L 13871795 3` UTR dysc - chr3L 13871839 3` UTR dysc - chr3L_5_13870001 chr3L_13870001 RAL-884 689 chr3L 13898231 13898252 chr3L 13898315 13898336 5 82 1.0 0.5 0.8 2.8 105 chr3L 13898231 intron dysc - chr3L 13898284 intron dysc - chr3L 13898336 intron dysc - chr3L_5_13895001 chr3L_13895001 RAL-884 690 chr3L 13901569 13901601 chr3L 13901646 13901652 12 74 2.0 1.5 1.8 4.3 83 chr3L 13901569 intron dysc - chr3L 13901610 intron dysc - chr3L 13901652 intron dysc - chr3L_12_13900001 chr3L_13900001 RAL-884 691 chr3L 13957884 13957905 chr3L 13958077 13958096 9 189 3.0 3.5 3.2 2.1 212 chr3L 13957884 intron CG32137 + chr3L 13957990 intron CG32137 + chr3L 13958096 intron CG32137 + chr3L_9_13955001 chr3L_13955001 RAL-884 692 chr3L 14036678 14036703 chr3L 14036771 14036795 6 93 1.5 3.0 2.2 1.9 117 chr3L 14036678 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036736 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036795 3` UTR pncr014:3L - chr3L_6_14035001 chr3L_14035001 RAL-884 693 chr3L 14118953 14118970 chr3L 14119039 14119056 6 84 3.5 4.0 3.8 1.2 103 chr3L 14118953 intron Sox21b - chr3L 14119004 intron Sox21b - chr3L 14119056 intron Sox21b - chr3L_6_14115001 chr3L_14115001 RAL-884 694 chr3L 14196420 14196445 chr3L 14196505 14196530 6 84 1.0 5.0 3.0 1.5 110 chr3L 14196420 intron nuf + chr3L 14196475 intron nuf + chr3L 14196530 intron nuf + chr3L_6_14195001 chr3L_14195001 RAL-884 695 chr3L 14245570 14245578 chr3L 14245664 14245671 1360 4 93 3.0 1.5 2.2 1.2 101 chr3L 14245570 3` UTR CR44561 - chr3L 14245620 3` UTR CR44561 - chr3L 14245671 3` UTR CR44561 - chr3L_4_14245001 chr3L_14245001 RAL-884 696 chr3L 14267385 14267393 chr3L 14271814 14271833 F-element 4 4435 5.0 2.0 3.5 0.9 4448 chr3L 14267385 intergenic not near genes chr3L 14269609 intergenic not near genes chr3L 14271833 intergenic not near genes chr3L_4_14265001 chr3L_14265001 RAL-884 697 chr3L 14282596 14282602 chr3L 14282676 14282682 4 80 3.5 7.0 5.2 0.6 86 chr3L 14282596 intron fz + chr3L 14282639 intron fz + chr3L 14282682 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-884 698 chr3L 14302936 14302960 chr3L 14303022 14303039 7 82 3.0 3.0 3.0 1.8 103 chr3L 14302936 intron fz + chr3L 14302988 intron fz + chr3L 14303039 intron fz + chr3L_7_14300001 chr3L_14300001 RAL-884 699 chr3L 14312037 14312057 chr3L 14316832 14316856 X-element 6 4797 3.0 2.5 2.8 1.6 4819 chr3L 14312037 exon fz + chr3L 14314446 intron fz + chr3L 14316856 intron fz + chr3L_6_14310001 chr3L_14310001 RAL-884 700 chr3L 14356518 14356551 chr3L 14356598 14356630 10 78 4.5 4.0 4.2 1.9 112 chr3L 14356518 intron fz + chr3L 14356574 intron fz + chr3L 14356630 intron fz + chr3L_10_14355001 chr3L_14355001 RAL-884 701 chr3L 14468449 14468476 chr3L 14473654 14473682 copia 4 5206 0.5 1.0 0.8 2.2 5233 chr3L 14468449 intron bbg - chr3L 14471066 intron bbg - chr3L 14473682 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-884 702 chr3L 14635235 14635254 chr3L 14635333 14635352 6 97 0.0 2.5 1.2 2.7 117 chr3L 14635235 intron dlp + chr3L 14635294 intron dlp + chr3L 14635352 intron dlp + chr3L_6_14635001 chr3L_14635001 RAL-884 703 chr3L 14705710 14705727 chr3L 14709334 14709353 6 3625 20.5 3.5 12.0 0.5 3643 chr3L 14705710 intron,exon ome +,CG13476 + chr3L 14707532 intron ome + chr3L 14709353 intron ome + chr3L_6_14705001 chr3L_14705001 RAL-884 704 chr3L 14721184 14721205 chr3L 14723024 14723033 Rt1c 8 1839 4.5 4.5 4.5 1.5 1849 chr3L 14721184 intron ome + chr3L 14722108 intron ome + chr3L 14723033 intron ome + chr3L_8_14720001 chr3L_14720001 RAL-884 705 chr3L 14729520 14729548 chr3L 14729627 14729660 6 112 1.5 0.0 0.8 3.3 140 chr3L 14729520 intron ome + chr3L 14729590 intron ome + chr3L 14729660 intron ome + chr3L_6_14725001 chr3L_14725001 RAL-884 706 chr3L 14740899 14740923 chr3L 14740988 14741012 5 89 1.5 3.5 2.5 1.4 113 chr3L 14740899 intron ome + chr3L 14740956 intron ome + chr3L 14741012 intron ome + chr3L_5_14740001 chr3L_14740001 RAL-884 707 chr3L 14855583 14855607 chr3L 14855671 14855695 6 88 3.5 3.5 3.5 1.3 112 chr3L 14855583 intron CG17839 + chr3L 14855639 intron CG17839 + chr3L 14855695 intron CG17839 + chr3L_6_14855001 chr3L_14855001 RAL-884 708 chr3L 14922106 14922128 chr3L 14922209 14922236 6 100 2.0 1.0 1.5 2.4 130 chr3L 14922106 intron DCX-EMAP + chr3L 14922171 intron DCX-EMAP + chr3L 14922236 intron DCX-EMAP + chr3L_6_14920001 chr3L_14920001 RAL-884 709 chr3L 15049883 15049899 chr3L 15049951 15049968 5 71 5.5 3.5 4.5 0.9 85 chr3L 15049883 intron,exon Sytbeta -,CG18581 - chr3L 15049926 intron,exon Sytbeta -,CG18581 - chr3L 15049968 intron,exon Sytbeta -,CG18581 - chr3L_5_15045001 chr3L_15045001 RAL-884 710 chr3L 15053428 15053449 chr3L 15053766 15053780 5 336 0.5 2.5 1.5 2.0 352 chr3L 15053428 intron Sytbeta - chr3L 15053604 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053780 intron,3` UTR Sytbeta -,CG18649 - chr3L_5_15050001 chr3L_15050001 RAL-884 711 chr3L 15153874 15153907 chr3L 15154064 15154091 8 186 13.0 17.5 15.2 0.5 217 chr3L 15153874 3` UTR FucTA + chr3L 15153982 3` UTR FucTA + chr3L 15154091 3` UTR FucTA + chr3L_8_15150001 chr3L_15150001 RAL-884 712 chr3L 15353362 15353391 chr3L 15353569 15353598 6 207 0.5 2.0 1.2 2.7 236 chr3L 15353362 intergenic not near genes chr3L 15353480 intergenic not near genes chr3L 15353598 intergenic not near genes chr3L_6_15350001 chr3L_15350001 RAL-884 713 chr3L 15466519 15466548 chr3L 15466603 15466628 6 79 0.0 3.0 1.5 2.4 109 chr3L 15466519 intergenic not near genes chr3L 15466574 intergenic not near genes chr3L 15466628 intergenic not near genes chr3L_6_15465001 chr3L_15465001 RAL-884 714 chr3L 15511305 15511315 chr3L 15511383 15511395 4 80 2.0 4.0 3.0 1.0 90 chr3L 15511305 intron Eip71CD + chr3L 15511350 intron Eip71CD + chr3L 15511395 intron Eip71CD + chr3L_4_15510001 chr3L_15510001 RAL-884 715 chr3L 15541620 15541636 chr3L 15541710 15541727 4 91 4.5 0.0 2.2 1.2 107 chr3L 15541620 intron CrebA + chr3L 15541674 intron CrebA + chr3L 15541727 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-884 716 chr3L 15750716 15750737 chr3L 15750813 15750834 6 96 2.0 2.0 2.0 2.0 118 chr3L 15750716 intergenic not near genes chr3L 15750775 intergenic not near genes chr3L 15750834 intergenic not near genes chr3L_6_15750001 chr3L_15750001 RAL-884 717 chr3L 15756880 15756899 chr3L 15756962 15756981 5 82 8.0 0.0 4.0 1.0 101 chr3L 15756880 intergenic not near genes chr3L 15756930 intergenic not near genes chr3L 15756981 intergenic not near genes chr3L_5_15755001 chr3L_15755001 RAL-884 718 chr3L 15809166 15809198 chr3L 15809250 15809282 9 84 0.0 3.0 1.5 3.6 116 chr3L 15809166 intergenic CG6244 +,CG13445 + chr3L 15809224 intergenic CG13445 +,CG6244 + chr3L 15809282 intergenic CG13445 +,CG6244 + chr3L_9_15805001 chr3L_15805001 RAL-884 719 chr3L 15824869 15824890 chr3L 15824952 15824976 8 83 5.0 3.5 4.2 1.5 107 chr3L 15824869 intron Dcp2 - chr3L 15824922 intron Dcp2 - chr3L 15824976 intron Dcp2 - chr3L_8_15820001 chr3L_15820001 RAL-884 720 chr3L 16162596 16162627 chr3L 16162680 16162711 6 81 2.5 3.0 2.8 1.6 115 chr3L 16162596 intron CG5151 - chr3L 16162654 intron CG5151 - chr3L 16162711 intron CG5151 - chr3L_6_16160001 chr3L_16160001 RAL-884 721 chr3L 16212812 16212840 chr3L 16212903 16212906 6 86 1.0 1.5 1.2 2.7 94 chr3L 16212812 intergenic CG13073 - chr3L 16212859 intergenic CG13073 - chr3L 16212906 intergenic CG13073 - chr3L_6_16210001 chr3L_16210001 RAL-884 722 chr3L 16322826 16322858 chr3L 16322912 16322945 6 84 3.0 5.5 4.2 1.2 119 chr3L 16322826 intergenic not near genes chr3L 16322886 intergenic not near genes chr3L 16322945 intergenic not near genes chr3L_6_16320001 chr3L_16320001 RAL-884 723 chr3L 16528903 16528926 chr3L 16529371 16529381 7 463 3.0 4.0 3.5 1.6 478 chr3L 16528903 intron CG43373 - chr3L 16529142 intron CG43373 - chr3L 16529381 intron CG43373 - chr3L_7_16525001 chr3L_16525001 RAL-884 724 chr3L 16540064 16540085 chr3L 16540152 16540159 4 84 0.5 3.0 1.8 1.4 95 chr3L 16540064 intron CG43373 - chr3L 16540112 intron CG43373 - chr3L 16540159 intron CG43373 - chr3L_4_16540001 chr3L_16540001 RAL-884 725 chr3L 16610687 16610718 chr3L 16610772 16610803 4 83 2.0 2.0 2.0 1.3 116 chr3L 16610687 3` UTR Su(P) - chr3L 16610745 exon Su(P) - chr3L 16610803 exon Su(P) - chr3L_4_16610001 chr3L_16610001 RAL-884 726 chr3L 16616510 16616539 chr3L 16621837 16621867 297 7 5327 1.0 1.0 1.0 3.5 5357 chr3L 16616510 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621867 3` UTR Abl - chr3L_7_16615001 chr3L_16615001 RAL-884 727 chr3L 16684018 16684049 chr3L 16689238 16689270 copia 6 5219 0.5 2.5 1.5 2.4 5252 chr3L 16684018 intron,intron Lasp -,CG43954 - chr3L 16686644 intron,intron Lasp -,CG43954 - chr3L 16689270 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_6_16685001 chr3L_16685001 RAL-884 728 chr3L 16772499 16772513 chr3L 16772586 16772603 5 88 3.0 1.5 2.2 1.6 104 chr3L 16772499 intron Nrt + chr3L 16772551 intron Nrt + chr3L 16772603 intron Nrt + chr3L_5_16770001 chr3L_16770001 RAL-884 729 chr3L 16817877 16817909 chr3L 16818016 16818034 5 132 5.0 4.0 4.5 0.9 157 chr3L 16817877 intron,intron nudC +,CG13024 - chr3L 16817956 intron,intron nudC +,CG13024 - chr3L 16818034 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-884 730 chr3L 16870884 16870896 chr3L 16870975 16870986 4 90 1.0 2.0 1.5 1.6 102 chr3L 16870884 intron Lmpt + chr3L 16870935 intron Lmpt + chr3L 16870986 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-884 731 chr3L 16945727 16945759 chr3L 16954878 16954887 roo 17 9148 2.5 1.0 1.8 6.1 9160 chr3L 16945727 exon Obp73a + chr3L 16950307 intergenic not near genes chr3L 16954887 5` UTR Nc73EF + chr3L_17_16950001 chr3L_16950001 RAL-884 732 chr3L 17034932 17034967 chr3L 17035120 17035120 G2 5 179 0.5 0.5 0.5 3.3 188 chr3L 17034932 intergenic not near genes chr3L 17035026 intergenic not near genes chr3L 17035120 intergenic not near genes chr3L_5_17035001 chr3L_17035001 RAL-884 733 chr3L 17085013 17085036 chr3L 17094162 17094185 roo 4 9148 2.5 3.0 2.8 1.1 9172 chr3L 17085013 intron Rbp6 - chr3L 17089599 intron Rbp6 - chr3L 17094185 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-884 734 chr3L 17272245 17272260 chr3L 17272378 17272389 5 132 3.0 2.5 2.8 1.3 144 chr3L 17272245 intergenic not near genes chr3L 17272317 intergenic not near genes chr3L 17272389 intergenic not near genes chr3L_5_17270001 chr3L_17270001 RAL-884 735 chr3L 17331069 17331097 chr3L 17331159 17331187 6 85 0.0 1.0 0.5 4.0 118 chr3L 17331069 intergenic not near genes chr3L 17331128 intergenic not near genes chr3L 17331187 intergenic not near genes chr3L_6_17330001 chr3L_17330001 RAL-884 736 chr3L 17367438 17367459 chr3L 17367531 17367553 5 94 2.5 2.0 2.2 1.6 115 chr3L 17367438 intergenic CR45688 +,Cad74A - chr3L 17367496 intergenic CR45688 +,Cad74A - chr3L 17367553 intergenic CR45688 +,Cad74A - chr3L_5_17365001 chr3L_17365001 RAL-884 737 chr3L 18000675 18000708 chr3L 18000752 18000784 6 76 2.0 1.5 1.8 2.1 109 chr3L 18000675 intron Eip75B - chr3L 18000730 intron Eip75B - chr3L 18000784 intron Eip75B - chr3L_6_18000001 chr3L_18000001 RAL-884 738 chr3L 18125699 18125723 chr3L 18125811 18125824 6 110 2.0 2.0 2.0 2.0 125 chr3L 18125699 intergenic not near genes chr3L 18125762 intergenic not near genes chr3L 18125824 intergenic not near genes chr3L_6_18125001 chr3L_18125001 RAL-884 739 chr3L 18173955 18173965 chr3L 18174027 18174048 4 76 3.0 2.5 2.8 1.1 93 chr3L 18173955 intron W - chr3L 18174002 intron W - chr3L 18174048 intron W - chr3L_4_18170001 chr3L_18170001 RAL-884 740 chr3L 18383452 18383475 chr3L 18383539 18383562 5 86 3.5 2.5 3.0 1.2 110 chr3L 18383452 intergenic not near genes chr3L 18383507 intergenic not near genes chr3L 18383562 intergenic not near genes chr3L_5_18380001 chr3L_18380001 RAL-884 741 chr3L 18406148 18406152 chr3L 18406211 18406228 4 73 0.5 1.5 1.0 2.0 80 chr3L 18406148 intergenic not near genes chr3L 18406188 intergenic not near genes chr3L 18406228 intergenic not near genes chr3L_4_18405001 chr3L_18405001 RAL-884 742 chr3L 18408734 18408758 chr3L 18408817 18408844 7 85 2.0 1.5 1.8 2.5 110 chr3L 18408734 intergenic not near genes chr3L 18408789 intergenic not near genes chr3L 18408844 intergenic not near genes chr3L_7_18405001 chr3L_18405001 RAL-884 743 chr3L 18528635 18528648 chr3L 18537796 18537809 roo 4 9161 5.5 1.0 3.2 1.0 9174 chr3L 18528635 intergenic not near genes chr3L 18533222 intergenic not near genes chr3L 18537809 intergenic not near genes chr3L_4_18530001 chr3L_18530001 RAL-884 744 chr3L 18546707 18546719 chr3L 18546801 18546813 4 94 3.0 4.0 3.5 0.9 106 chr3L 18546707 intergenic not near genes chr3L 18546760 intergenic not near genes chr3L 18546813 intergenic not near genes chr3L_4_18545001 chr3L_18545001 RAL-884 745 chr3L 18567028 18567053 chr3L 18567113 18567125 4 82 1.0 4.0 2.5 1.1 97 chr3L 18567028 intron AstC-R1 + chr3L 18567076 intron AstC-R1 + chr3L 18567125 intron AstC-R1 + chr3L_4_18565001 chr3L_18565001 RAL-884 746 chr3L 18579573 18579593 chr3L 18579701 18579718 4 125 1.0 2.0 1.5 1.6 145 chr3L 18579573 intergenic not near genes chr3L 18579646 intergenic not near genes chr3L 18579718 intergenic not near genes chr3L_4_18575001 chr3L_18575001 RAL-884 747 chr3L 18593958 18593976 chr3L 18595930 18595944 Doc 5 1975 1.0 0.5 0.8 2.8 1986 chr3L 18593958 intergenic term - chr3L 18594951 intergenic not near genes chr3L 18595944 intergenic CR45389 + chr3L_5_18590001 chr3L_18590001 RAL-884 748 chr3L 18606751 18606776 chr3L 18606949 18606964 7 192 3.0 2.0 2.5 2.0 213 chr3L 18606751 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606858 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606964 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_7_18605001 chr3L_18605001 RAL-884 749 chr3L 18656192 18656219 chr3L 18656267 18656304 7 81 2.5 7.0 4.8 1.2 112 chr3L 18656192 intron MYPT-75D + chr3L 18656248 intron MYPT-75D + chr3L 18656304 intron MYPT-75D + chr3L_7_18655001 chr3L_18655001 RAL-884 750 chr3L 18679391 18679396 chr3L 18689149 18689153 6 9756 23.0 30.0 26.5 0.2 9762 chr3L 18679391 intergenic not near genes chr3L 18684272 3` UTR Cyp12c1 - chr3L 18689153 intergenic not near genes chr3L_6_18680001 chr3L_18680001 RAL-884 751 chr3L 18721772 18721805 chr3L 18721863 18721896 9 89 0.5 1.0 0.8 5.0 124 chr3L 18721772 intergenic CG12477 - chr3L 18721834 intergenic CG12477 - chr3L 18721896 3` UTR CG12477 - chr3L_9_18720001 chr3L_18720001 RAL-884 752 chr3L 18772407 18772439 chr3L 18781087 18781120 roo 9 8681 3.0 4.5 3.8 1.9 8713 chr3L 18772407 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_9_18775001 chr3L_18775001 RAL-884 753 chr3L 18896781 18896790 chr3L 18896899 18896908 5 125 1.0 2.5 1.8 1.8 127 chr3L 18896781 intron CG3902 - chr3L 18896844 intron CG3902 - chr3L 18896908 intron CG3902 - chr3L_5_18895001 chr3L_18895001 RAL-884 754 chr3L 18969549 18969563 chr3L 18969625 18969638 4 76 3.5 3.5 3.5 0.9 89 chr3L 18969549 intergenic not near genes chr3L 18969594 intergenic not near genes chr3L 18969638 intergenic not near genes chr3L_4_18965001 chr3L_18965001 RAL-884 755 chr3L 19063803 19063816 chr3L 19063886 19063899 4 83 5.0 3.0 4.0 0.8 96 chr3L 19063803 intron CG6812 + chr3L 19063851 intron CG6812 + chr3L 19063899 intron CG6812 + chr3L_4_19060001 chr3L_19060001 RAL-884 756 chr3L 19115642 19115664 chr3L 19115814 19115841 BS 4 176 3.5 2.0 2.8 1.1 199 chr3L 19115642 intron CG14082 - chr3L 19115742 intron CG14082 - chr3L 19115841 intron CG14082 - chr3L_4_19115001 chr3L_19115001 RAL-884 757 chr3L 19117045 19117076 chr3L 19124491 19124523 mdg1 8 7443 2.0 4.0 3.0 2.0 7478 chr3L 19117045 intron CG14082 - chr3L 19120784 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_8_19120001 chr3L_19120001 RAL-884 758 chr3L 19133670 19133700 chr3L 19133754 19133773 7 78 1.5 2.0 1.8 2.5 103 chr3L 19133670 intron CG14082 - chr3L 19133722 intron CG14082 - chr3L 19133773 intron CG14082 - chr3L_7_19130001 chr3L_19130001 RAL-884 759 chr3L 19136701 19136733 chr3L 19136919 19136952 5 214 2.0 1.5 1.8 1.8 251 chr3L 19136701 5` UTR CG14082 - chr3L 19136826 intron CG14082 - chr3L 19136952 intron CG14082 - chr3L_5_19135001 chr3L_19135001 RAL-884 760 chr3L 19157328 19157344 chr3L 19157853 19157863 5 521 3.0 2.5 2.8 1.3 535 chr3L 19157328 intron fz2 - chr3L 19157596 intron fz2 - chr3L 19157863 intron fz2 - chr3L_5_19155001 chr3L_19155001 RAL-884 761 chr3L 19157345 19157352 chr3L 19157847 19157877 4 515 3.0 1.5 2.2 1.2 532 chr3L 19157345 intron fz2 - chr3L 19157611 intron fz2 - chr3L 19157877 intron fz2 - chr3L_4_19155001 chr3L_19155001 RAL-884 762 chr3L 19182396 19182420 chr3L 19182476 19182492 8 80 0.5 2.0 1.2 3.6 96 chr3L 19182396 intron fz2 - chr3L 19182444 intron fz2 - chr3L 19182492 intron fz2 - chr3L_8_19180001 chr3L_19180001 RAL-884 763 chr3L 19208063 19208092 chr3L 19209431 19209462 Doc 10 1370 5.5 4.0 4.8 1.7 1399 chr3L 19208063 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209462 intron fz2 - chr3L_10_19205001 chr3L_19205001 RAL-884 764 chr3L 19269816 19269849 chr3L 19270020 19270053 7 193 0.5 2.0 1.2 3.2 237 chr3L 19269816 intron,exon CG14085 +,CG14088 - chr3L 19269934 intron,exon CG14085 +,CG14088 - chr3L 19270053 intron,exon CG14085 +,CG14088 - chr3L_7_19265001 chr3L_19265001 RAL-884 765 chr3L 19417802 19417830 chr3L 19417882 19417910 4 75 2.5 2.5 2.5 1.1 108 chr3L 19417802 intergenic not near genes chr3L 19417856 intergenic not near genes chr3L 19417910 intergenic not near genes chr3L_4_19415001 chr3L_19415001 RAL-884 766 chr3L 19435660 19435670 chr3L 19435733 19435760 7 81 3.5 3.5 3.5 1.6 100 chr3L 19435660 intergenic not near genes chr3L 19435710 intergenic not near genes chr3L 19435760 intergenic not near genes chr3L_7_19435001 chr3L_19435001 RAL-884 767 chr3L 19488116 19488144 chr3L 19488201 19488230 6 81 2.0 2.0 2.0 2.0 114 chr3L 19488116 3` UTR,exon pncr009:3L -,CG32212 + chr3L 19488173 3` UTR,exon pncr009:3L -,CG32212 + chr3L 19488230 3` UTR,exon pncr009:3L -,CG32212 + chr3L_6_19485001 chr3L_19485001 RAL-884 768 chr3L 19666368 19666390 chr3L 19666446 19666467 4 78 1.5 1.5 1.5 1.6 99 chr3L 19666368 intergenic not near genes chr3L 19666418 intergenic not near genes chr3L 19666467 intergenic not near genes chr3L_4_19665001 chr3L_19665001 RAL-884 769 chr3L 19861820 19861852 chr3L 19863608 19863640 S-element 7 1785 2.5 2.5 2.5 2.0 1820 chr3L 19861820 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863640 intergenic not near genes chr3L_7_19860001 chr3L_19860001 RAL-884 770 chr3L 19933536 19933558 chr3L 19934358 19934379 7 821 2.5 0.5 1.5 2.8 843 chr3L 19933536 intergenic CR45678 + chr3L 19933958 5` UTR CR45678 + chr3L 19934379 intergenic CR45678 + chr3L_7_19930001 chr3L_19930001 RAL-884 771 chr3L 19962957 19962979 chr3L 19963035 19963057 5 78 0.0 3.0 1.5 2.0 100 chr3L 19962957 intron Ac76E + chr3L 19963007 intron Ac76E + chr3L 19963057 intron Ac76E + chr3L_5_19960001 chr3L_19960001 RAL-884 772 chr3L 19981204 19981233 chr3L 19981284 19981292 4 74 3.0 1.0 2.0 1.3 88 chr3L 19981204 intergenic CG17732 + chr3L 19981248 intergenic CG17732 + chr3L 19981292 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-884 773 chr3L 20086786 20086819 chr3L 20086864 20086890 7 77 0.0 1.0 0.5 4.7 104 chr3L 20086786 intron sNPF-R - chr3L 20086838 intron sNPF-R - chr3L 20086890 intron sNPF-R - chr3L_7_20085001 chr3L_20085001 RAL-884 774 chr3L 20143078 20143109 chr3L 20143158 20143189 7 78 5.0 0.5 2.8 1.8 111 chr3L 20143078 intergenic not near genes chr3L 20143134 intergenic not near genes chr3L 20143189 intergenic not near genes chr3L_7_20140001 chr3L_20140001 RAL-884 775 chr3L 20148286 20148311 chr3L 20148376 20148398 8 86 4.0 4.0 4.0 1.6 112 chr3L 20148286 intergenic not near genes chr3L 20148342 intergenic not near genes chr3L 20148398 intergenic not near genes chr3L_8_20145001 chr3L_20145001 RAL-884 776 chr3L 20315662 20315684 chr3L 20315741 20315764 12 78 1.0 2.5 1.8 4.3 102 chr3L 20315662 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315713 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315764 3` UTR,intron alphaSnap +,CR43875 - chr3L_12_20315001 chr3L_20315001 RAL-884 777 chr3L 20405576 20405596 chr3L 20405660 20405680 12 80 7.0 7.5 7.2 1.5 104 chr3L 20405576 intergenic not near genes chr3L 20405628 intergenic not near genes chr3L 20405680 intergenic not near genes chr3L_12_20405001 chr3L_20405001 RAL-884 778 chr3L 20405598 20405607 chr3L 20405658 20405691 10 72 4.5 7.0 5.8 1.5 93 chr3L 20405598 intergenic not near genes chr3L 20405644 intergenic not near genes chr3L 20405691 intergenic not near genes chr3L_10_20405001 chr3L_20405001 RAL-884 779 chr3L 20451277 20451292 chr3L 20451518 20451532 5 240 3.0 2.0 2.5 1.4 255 chr3L 20451277 intron CG5199 - chr3L 20451404 intron CG5199 - chr3L 20451532 intron CG5199 - chr3L_5_20450001 chr3L_20450001 RAL-884 780 chr3L 20476770 20476786 chr3L 20484366 20484383 springer 4 7594 3.5 3.5 3.5 0.9 7613 chr3L 20476770 3` UTR isoQC + chr3L 20480576 intergenic not near genes chr3L 20484383 3` UTR ZnT77C - chr3L_4_20480001 chr3L_20480001 RAL-884 781 chr3L 20590077 20590096 chr3L 20590601 20590635 412 4 529 1.5 4.0 2.8 1.1 558 chr3L 20590077 intergenic not near genes chr3L 20590356 intergenic not near genes chr3L 20590635 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-884 782 chr3L 20710758 20710793 chr3L 20710835 20710845 7 73 1.0 1.0 1.0 3.5 87 chr3L 20710758 intergenic not near genes chr3L 20710802 intergenic not near genes chr3L 20710845 intergenic not near genes chr3L_7_20710001 chr3L_20710001 RAL-884 783 chr3L 20849270 20849302 chr3L 20849349 20849381 5 75 0.5 1.5 1.0 2.5 111 chr3L 20849270 intron CG32432 - chr3L 20849326 intron CG32432 - chr3L 20849381 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-884 784 chr3L 20861716 20861740 chr3L 20861799 20861823 6 83 3.0 5.5 4.2 1.2 107 chr3L 20861716 intron CG32432 - chr3L 20861770 intron CG32432 - chr3L 20861823 intron CG32432 - chr3L_6_20860001 chr3L_20860001 RAL-884 785 chr3L 20868716 20868747 chr3L 20868846 20868872 12 126 2.0 4.0 3.0 3.0 156 chr3L 20868716 intron CG32432 - chr3L 20868794 intron CG32432 - chr3L 20868872 intron CG32432 - chr3L_12_20865001 chr3L_20865001 RAL-884 786 chr3L 20890500 20890515 chr3L 20890576 20890588 5 75 1.0 2.5 1.8 1.8 88 chr3L 20890500 intergenic not near genes chr3L 20890544 intergenic not near genes chr3L 20890588 intergenic not near genes chr3L_5_20890001 chr3L_20890001 RAL-884 787 chr3L 20902716 20902727 chr3L 20902775 20902804 4 75 2.5 0.5 1.5 1.6 88 chr3L 20902716 intergenic CR45383 + chr3L 20902760 intergenic CR45383 + chr3L 20902804 intergenic CR45383 + chr3L_4_20900001 chr3L_20900001 RAL-884 788 chr3L 20942578 20942602 chr3L 20942655 20942679 7 76 4.5 2.0 3.2 1.7 101 chr3L 20942578 intron fng - chr3L 20942628 intron fng - chr3L 20942679 intron fng - chr3L_7_20940001 chr3L_20940001 RAL-884 789 chr3L 21014944 21014947 chr3L 21023396 21023414 Tirant 4 8464 4.0 1.5 2.8 1.1 8470 chr3L 21014944 intron skd - chr3L 21019179 intron skd - chr3L 21023414 intron skd - chr3L_4_21015001 chr3L_21015001 RAL-884 790 chr3L 21057147 21057162 chr3L 21057363 21057376 4 215 2.5 3.0 2.8 1.1 229 chr3L 21057147 intron siz + chr3L 21057262 intron siz + chr3L 21057376 intron siz + chr3L_4_21055001 chr3L_21055001 RAL-884 791 chr3L 21082212 21082226 chr3L 21082288 21082304 5 78 3.0 2.0 2.5 1.4 92 chr3L 21082212 intron ko - chr3L 21082258 intron ko - chr3L 21082304 intron ko - chr3L_5_21080001 chr3L_21080001 RAL-884 792 chr3L 21151872 21151895 chr3L 21156955 21156979 flea 5 5083 3.5 3.0 3.2 1.2 5107 chr3L 21151872 intron Ac78C - chr3L 21154426 intron Ac78C - chr3L 21156979 intron Ac78C - chr3L_5_21150001 chr3L_21150001 RAL-884 793 chr3L 21158597 21158630 chr3L 21158673 21158700 11 72 2.0 1.5 1.8 3.9 103 chr3L 21158597 intron Ac78C - chr3L 21158648 intron Ac78C - chr3L 21158700 intron Ac78C - chr3L_11_21155001 chr3L_21155001 RAL-884 794 chr3L 21159508 21159526 chr3L 21159604 21159621 4 95 4.5 5.0 4.8 0.7 113 chr3L 21159508 intron Ac78C - chr3L 21159564 intron Ac78C - chr3L 21159621 intron Ac78C - chr3L_4_21155001 chr3L_21155001 RAL-884 795 chr3L 21243753 21243764 chr3L 21251316 21251327 412 5 7562 1.5 7.5 4.5 0.9 7574 chr3L 21243753 intron Eip78C + chr3L 21247540 intron Eip78C + chr3L 21251327 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-884 796 chr3L 21306150 21306166 chr3L 21315309 21315313 roo 4 9156 4.0 1.0 2.5 1.1 9163 chr3L 21306150 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310732 intron Pc - chr3L 21315313 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-884 797 chr3L 21321091 21321112 chr3L 21321217 21321243 8 129 3.5 2.5 3.0 2.0 152 chr3L 21321091 intron Rab26 + chr3L 21321167 intron Rab26 + chr3L 21321243 intron Rab26 + chr3L_8_21320001 chr3L_21320001 RAL-884 798 chr3L 21415136 21415166 chr3L 21415218 21415249 15 79 3.5 0.5 2.0 5.0 113 chr3L 21415136 intron rgn + chr3L 21415192 intron rgn + chr3L 21415249 intron rgn + chr3L_15_21415001 chr3L_21415001 RAL-884 799 chr3L 21498838 21498870 chr3L 21500474 21500480 1360 7 1632 2.0 6.5 4.2 1.3 1642 chr3L 21498838 intron Glg1 - chr3L 21499659 intron Glg1 - chr3L 21500480 intron Glg1 - chr3L_7_21495001 chr3L_21495001 RAL-884 800 chr3L 21727411 21727433 chr3L 21727495 21727518 4 83 7.5 10.0 8.8 0.4 107 chr3L 21727411 intron CG11247 - chr3L 21727464 intron CG11247 - chr3L 21727518 intron CG11247 - chr3L_4_21725001 chr3L_21725001 RAL-884 801 chr3L 21749326 21749347 chr3L 21754481 21754487 Doc 6 5155 6.5 4.0 5.2 1.0 5161 chr3L 21749326 intron Syn1 - chr3L 21751906 intron Syn1 - chr3L 21754487 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-884 802 chr3L 21905983 21906008 chr3L 21906252 21906262 4 265 5.5 4.0 4.8 0.7 279 chr3L 21905983 intron mub + chr3L 21906122 intron mub + chr3L 21906262 intron mub + chr3L_4_21905001 chr3L_21905001 RAL-884 803 chr3L 22447220 22447231 chr3L 22447291 22447322 4 86 2.0 4.0 3.0 1.0 102 chr3L 22447220 intergenic not near genes chr3L 22447271 intergenic not near genes chr3L 22447322 intergenic not near genes chr3L_4_22445001 chr3L_22445001 RAL-884 804 chr3L 22522697 22522727 chr3L 22522774 22522802 6 76 2.0 3.5 2.8 1.6 105 chr3L 22522697 intergenic not near genes chr3L 22522750 intergenic not near genes chr3L 22522802 intergenic not near genes chr3L_6_22520001 chr3L_22520001 RAL-884 805 chr3L 22617198 22617220 chr3L 22624650 22624672 blood 5 7451 3.0 2.0 2.5 1.4 7474 chr3L 22617198 intron CG14459 - chr3L 22620935 intron CG14459 - chr3L 22624672 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-884 806 chr3L 22668043 22668061 chr3L 22668119 22668127 6 74 11.0 7.5 9.2 0.6 84 chr3L 22668043 3` UTR CR43270 - chr3L 22668085 3` UTR CR43270 - chr3L 22668127 3` UTR CR43270 - chr3L_6_22665001 chr3L_22665001 RAL-884 807 chr3L 22668062 22668077 chr3L 22668116 22668149 7 67 10.0 7.5 8.8 0.7 87 chr3L 22668062 3` UTR CR43270 - chr3L 22668106 3` UTR CR43270 - chr3L 22668149 3` UTR CR43270 - chr3L_7_22665001 chr3L_22665001 RAL-884 808 chr3L 22761415 22761418 chr3L 22766820 22766851 Ivk 4 5420 0.5 1.5 1.0 2.0 5436 chr3L 22761415 intron SPoCk + chr3L 22764133 intron SPoCk + chr3L 22766851 intron SPoCk + chr3L_4_22760001 chr3L_22760001 RAL-884 809 chr3L 22853485 22853723 chr3L 22853548 22853802 10 80 0.0 5.5 2.8 2.6 317 chr3L 22853485 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853644 5` UTR CR43426 + chr3L 22853802 5` UTR CR43426 + chr3L_10_22850001 chr3L_22850001 RAL-884 810 chr3L 22855333 22855350 chr3L 22855409 22855427 6 75 12.0 10.5 11.2 0.5 94 chr3L 22855333 exon CG32459 - chr3L 22855380 exon CG32459 - chr3L 22855427 exon CG32459 - chr3L_6_22855001 chr3L_22855001 RAL-884 811 chr3L 22865985 22866000 chr3L 22867118 22867119 Doc 5 1129 5.0 3.5 4.2 1.0 1134 chr3L 22865985 intron CG33170 + chr3L 22866552 intron CG33170 + chr3L 22867119 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-884 812 chr3L 24012408 24012429 chr3L 24020744 24020770 roo 4 8334 4.0 1.5 2.8 1.1 8362 chr3L 24012408 intergenic not near genes chr3L 24016589 intergenic not near genes chr3L 24020770 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-884 813 chr3L 25464023 25464098 chr3L 25464109 25464196 8 88 4.0 2.5 3.2 1.9 173 chr3L 25464023 intergenic not near genes chr3L 25464110 intergenic not near genes chr3L 25464196 intergenic not near genes chr3L_8_25460001 chr3L_25460001 RAL-884 814 chr3L 27368883 27368910 chr3L 27369428 27369455 5 545 1.0 0.5 0.8 2.8 572 chr3L 27368883 intron Dbp80 + chr3L 27369169 intron Dbp80 + chr3L 27369455 intron Dbp80 + chr3L_5_27365001 chr3L_27365001 RAL-884 815 chr3L 27727646 27727658 chr3L 27728740 27728751 G-element 7 1100 3.0 5.0 4.0 1.4 1105 chr3L 27727646 intergenic not near genes chr3L 27728198 intergenic not near genes chr3L 27728751 intergenic not near genes chr3L_7_27725001 chr3L_27725001 RAL-884 816 chr3R 1443431 1443454 chr3R 1443506 1443507 5 68 0.5 1.0 0.8 2.8 76 chr3R 1443431 intron CG40155 + chr3R 1443469 intron CG40155 + chr3R 1443507 intron CG40155 + chr3R_5_1440001 chr3R_1440001 RAL-884 817 chr3R 1938795 1939083 chr3R 1938905 1939176 4 94 0.0 4.5 2.2 1.2 381 chr3R 1938795 intergenic not near genes chr3R 1938986 intergenic not near genes chr3R 1939176 intergenic not near genes chr3R_4_1935001 chr3R_1935001 RAL-884 818 chr3R 2534136 2534158 chr3R 2541705 2541727 6 7567 12.5 12.0 12.2 0.5 7591 chr3R 2534136 intergenic not near genes chr3R 2537932 intergenic not near genes chr3R 2541727 intergenic not near genes chr3R_6_2535001 chr3R_2535001 RAL-884 819 chr3R 4063809 4063830 chr3R 4069089 4069108 4 5278 5.0 9.0 7.0 0.5 5299 chr3R 4063809 intergenic not near genes chr3R 4066458 intergenic not near genes chr3R 4069108 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-884 820 chr3R 4206069 4206103 chr3R 4211644 4211676 mdg3 5 5574 3.0 1.5 2.2 1.6 5607 chr3R 4206069 intron CG14636 - chr3R 4208872 intron CG14636 - chr3R 4211676 intron CG14636 - chr3R_5_4205001 chr3R_4205001 RAL-884 821 chr3R 4408413 4408442 chr3R 4412708 4412746 Juan 7 4302 1.5 1.0 1.2 3.2 4333 chr3R 4408413 intron CG32944 - chr3R 4410580 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-884 822 chr3R 4609550 4609583 chr3R 4610714 4610723 1360 5 1156 8.0 7.0 7.5 0.6 1173 chr3R 4609550 intergenic not near genes chr3R 4610136 intergenic not near genes chr3R 4610723 intergenic not near genes chr3R_5_4610001 chr3R_4610001 RAL-884 823 chr3R 4681824 4681858 chr3R 4681904 4681938 5 77 5.0 8.0 6.5 0.7 114 chr3R 4681824 intron CG43427 + chr3R 4681881 intron CG43427 + chr3R 4681938 intron CG43427 + chr3R_5_4680001 chr3R_4680001 RAL-884 824 chr3R 4753255 4753272 chr3R 4757551 4757558 F-element 4 4297 4.5 4.5 4.5 0.7 4303 chr3R 4753255 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757558 intron,exon atms +,CG44098 - chr3R_4_4755001 chr3R_4755001 RAL-884 825 chr3R 4759717 4759752 chr3R 4761214 4761249 hopper2 7 1497 4.5 5.5 5.0 1.2 1532 chr3R 4759717 intron,intron atms +,CG44098 - chr3R 4760483 intron,intron atms +,CG44098 - chr3R 4761249 intron,intron atms +,CG44098 - chr3R_7_4760001 chr3R_4760001 RAL-884 826 chr3R 4861573 4861597 chr3R 4861646 4861674 7 76 2.5 1.5 2.0 2.3 101 chr3R 4861573 intron opa + chr3R 4861624 intron opa + chr3R 4861674 intron opa + chr3R_7_4860001 chr3R_4860001 RAL-884 827 chr3R 4885387 4885419 chr3R 4885478 4885480 4 84 6.0 6.5 6.2 0.6 93 chr3R 4885387 intergenic not near genes chr3R 4885434 intergenic not near genes chr3R 4885480 intergenic not near genes chr3R_4_4885001 chr3R_4885001 RAL-884 828 chr3R 4887487 4887512 chr3R 4894864 4894889 rover 4 7371 3.5 3.5 3.5 0.9 7402 chr3R 4887487 intergenic not near genes chr3R 4891188 intergenic not near genes chr3R 4894889 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-884 829 chr3R 4909372 4909385 chr3R 4911964 4911978 4 2588 26.0 15.5 20.8 0.2 2606 chr3R 4909372 exon Gnf1 + chr3R 4910675 5` UTR Cdep + chr3R 4911978 intron Cdep + chr3R_4_4910001 chr3R_4910001 RAL-884 830 chr3R 4966013 4966029 chr3R 4966105 4966121 4 92 1.5 2.5 2.0 1.3 108 chr3R 4966013 intron CG1124 + chr3R 4966067 intron CG1124 + chr3R 4966121 intron CG1124 + chr3R_4_4965001 chr3R_4965001 RAL-884 831 chr3R 5067987 5068007 chr3R 5073504 5073524 mdg3 5 5517 4.0 3.0 3.5 1.1 5537 chr3R 5067987 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073524 intergenic not near genes chr3R_5_5070001 chr3R_5070001 RAL-884 832 chr3R 5206810 5206843 chr3R 5206952 5206957 4 133 9.0 8.5 8.8 0.4 147 chr3R 5206810 intron cno - chr3R 5206884 intron cno - chr3R 5206957 intron cno - chr3R_4_5205001 chr3R_5205001 RAL-884 833 chr3R 5278087 5278121 chr3R 5278168 5278201 9 78 4.5 5.0 4.8 1.6 114 chr3R 5278087 intron mtd - chr3R 5278144 intron mtd - chr3R 5278201 intron mtd - chr3R_9_5275001 chr3R_5275001 RAL-884 834 chr3R 5338398 5338429 chr3R 5343575 5343589 Rt1c 11 5173 3.0 6.0 4.5 2.0 5191 chr3R 5338398 intron mtd - chr3R 5340994 intron mtd - chr3R 5343589 intron mtd - chr3R_11_5340001 chr3R_5340001 RAL-884 835 chr3R 5445959 5445993 chr3R 5452419 5452453 Burdock 5 6460 1.5 0.5 1.0 2.5 6494 chr3R 5445959 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452453 intron CG14669 + chr3R_5_5445001 chr3R_5445001 RAL-884 836 chr3R 5734651 5734680 chr3R 5734740 5734769 5 88 4.0 3.5 3.8 1.0 118 chr3R 5734651 exon CG1239 + chr3R 5734710 3` UTR CG2100 - chr3R 5734769 exon CG2100 - chr3R_5_5730001 chr3R_5730001 RAL-884 837 chr3R 5746015 5746043 chr3R 5746256 5746284 pogo 10 235 2.0 3.0 2.5 2.9 269 chr3R 5746015 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746284 3` UTR Madm + chr3R_10_5745001 chr3R_5745001 RAL-884 838 chr3R 5809119 5809135 chr3R 5809359 5809360 pogo 5 237 2.5 2.5 2.5 1.4 241 chr3R 5809119 3` UTR CG11000 + chr3R 5809240 3` UTR CG11000 + chr3R 5809360 3` UTR CG11000 + chr3R_5_5805001 chr3R_5805001 RAL-884 839 chr3R 5822381 5822411 chr3R 5823547 5823575 1360 6 1166 1.5 3.5 2.5 1.7 1194 chr3R 5822381 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823575 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-884 840 chr3R 5840822 5840848 chr3R 5840909 5840936 5 87 16.0 13.0 14.5 0.3 114 chr3R 5840822 intergenic CG1213 + chr3R 5840879 intergenic CG1213 + chr3R 5840936 intergenic CG1213 + chr3R_5_5840001 chr3R_5840001 RAL-884 841 chr3R 5911016 5911025 chr3R 5911093 5911104 4 79 9.5 8.5 9.0 0.4 88 chr3R 5911016 intron CG34113 - chr3R 5911060 intron CG34113 - chr3R 5911104 intron CG34113 - chr3R_4_5910001 chr3R_5910001 RAL-884 842 chr3R 5927563 5927586 chr3R 5927801 5927826 pogo 10 237 5.0 3.0 4.0 2.0 263 chr3R 5927563 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927826 intron CG34113 - chr3R_10_5925001 chr3R_5925001 RAL-884 843 chr3R 6133133 6133162 chr3R 6133221 6133249 4 87 6.5 10.5 8.5 0.4 116 chr3R 6133133 intergenic not near genes chr3R 6133191 intergenic not near genes chr3R 6133249 intergenic not near genes chr3R_4_6130001 chr3R_6130001 RAL-884 844 chr3R 6158518 6158540 chr3R 6167096 6167120 Tirant 5 8581 4.5 6.0 5.2 0.8 8602 chr3R 6158518 intergenic not near genes chr3R 6162819 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-884 845 chr3R 6175171 6175202 chr3R 6182443 6182469 HMS-Beagle2 5 7271 1.5 1.0 1.2 2.3 7298 chr3R 6175171 intergenic Osi1 + chr3R 6178820 intron CR45194 + chr3R 6182469 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-884 846 chr3R 6510025 6510058 chr3R 6515106 6515139 jockey 4 5077 1.5 0.5 1.0 2.0 5114 chr3R 6510025 intergenic not near genes chr3R 6512582 intergenic not near genes chr3R 6515139 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-884 847 chr3R 6643558 6643578 chr3R 6643660 6643669 4 99 8.0 8.5 8.2 0.4 111 chr3R 6643558 intron CG1315 - chr3R 6643614 intron CG1315 - chr3R 6643669 intron CG1315 - chr3R_4_6640001 chr3R_6640001 RAL-884 848 chr3R 6737501 6737521 chr3R 6739285 6739307 Doc 7 1782 4.0 1.5 2.8 1.8 1806 chr3R 6737501 intron pb - chr3R 6738404 intron pb - chr3R 6739307 intron pb - chr3R_7_6735001 chr3R_6735001 RAL-884 849 chr3R 6958930 6958942 chr3R 6959135 6959152 5 206 4.5 4.0 4.2 1.0 222 chr3R 6958930 intron Antp - chr3R 6959041 intron Antp - chr3R 6959152 intron Antp - chr3R_5_6955001 chr3R_6955001 RAL-884 850 chr3R 7103294 7103318 chr3R 7103359 7103385 6 68 2.5 2.5 2.5 1.7 91 chr3R 7103294 intron Alh - chr3R 7103340 intron Alh - chr3R 7103385 intron Alh - chr3R_6_7100001 chr3R_7100001 RAL-884 851 chr3R 7385586 7385616 chr3R 7385662 7385688 4 73 7.0 6.0 6.5 0.5 102 chr3R 7385586 intergenic not near genes chr3R 7385637 intergenic not near genes chr3R 7385688 intergenic not near genes chr3R_4_7385001 chr3R_7385001 RAL-884 852 chr3R 7447992 7448006 chr3R 7448070 7448084 4 78 4.0 3.5 3.8 0.8 92 chr3R 7447992 intergenic not near genes chr3R 7448038 intergenic not near genes chr3R 7448084 intergenic not near genes chr3R_4_7445001 chr3R_7445001 RAL-884 853 chr3R 7677935 7677943 chr3R 7678030 7678044 7 104 0.5 1.5 1.0 3.5 109 chr3R 7677935 intron Nlg1 + chr3R 7677990 intron Nlg1 + chr3R 7678044 intron Nlg1 + chr3R_7_7675001 chr3R_7675001 RAL-884 854 chr3R 7684941 7684972 chr3R 7685253 7685283 5 311 3.5 11.0 7.2 0.6 342 chr3R 7684941 intron Nlg1 + chr3R 7685112 intron Nlg1 + chr3R 7685283 intron Nlg1 + chr3R_5_7685001 chr3R_7685001 RAL-884 855 chr3R 7793349 7793366 chr3R 7793428 7793445 4 78 2.0 1.0 1.5 1.6 96 chr3R 7793349 3` UTR CG10086 + chr3R 7793397 3` UTR CG10086 + chr3R 7793445 3` UTR CG10086 + chr3R_4_7790001 chr3R_7790001 RAL-884 856 chr3R 7849650 7849668 chr3R 7850817 7850835 1360 4 1167 0.5 3.5 2.0 1.3 1185 chr3R 7849650 intron CG34384 + chr3R 7850242 intron CG34384 + chr3R 7850835 intron CG34384 + chr3R_4_7850001 chr3R_7850001 RAL-884 857 chr3R 7857643 7857666 chr3R 7857726 7857744 7 77 3.5 1.0 2.2 2.2 101 chr3R 7857643 3` UTR CG17816 - chr3R 7857694 3` UTR CG17816 - chr3R 7857744 3` UTR CG17816 - chr3R_7_7855001 chr3R_7855001 RAL-884 858 chr3R 7948446 7948468 chr3R 7948523 7948537 4 74 4.5 3.0 3.8 0.8 91 chr3R 7948446 intron dsx - chr3R 7948492 intron dsx - chr3R 7948537 intron dsx - chr3R_4_7945001 chr3R_7945001 RAL-884 859 chr3R 7955942 7955966 chr3R 7956019 7956043 5 75 11.5 7.5 9.5 0.5 101 chr3R 7955942 intron dsx - chr3R 7955992 intron dsx - chr3R 7956043 intron dsx - chr3R_5_7955001 chr3R_7955001 RAL-884 860 chr3R 8339246 8339247 chr3R 21907534 21907536 8 13568288 14.5 20.0 17.2 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_8_15120001 chr3R_15120001 RAL-884 861 chr3R 8403024 8403039 chr3R 8412176 8412205 roo 8 9162 3.5 4.0 3.8 1.7 9181 chr3R 8403024 intron CG45263 - chr3R 8407614 intron CG45263 - chr3R 8412205 intron CG45263 - chr3R_8_8405001 chr3R_8405001 RAL-884 862 chr3R 8570479 8570500 chr3R 8575115 8575132 HMS-Beagle 7 4634 4.0 2.0 3.0 1.8 4653 chr3R 8570479 intergenic not near genes chr3R 8572806 intergenic not near genes chr3R 8575132 intergenic not near genes chr3R_7_8570001 chr3R_8570001 RAL-884 863 chr3R 8601771 8601796 chr3R 8610919 8610949 roo 7 9143 5.5 6.5 6.0 1.0 9178 chr3R 8601771 intron 5-HT2B + chr3R 8606360 intron 5-HT2B + chr3R 8610949 intron 5-HT2B + chr3R_7_8605001 chr3R_8605001 RAL-884 864 chr3R 8630915 8630931 chr3R 8631021 8631023 4 102 3.5 8.5 6.0 0.6 108 chr3R 8630915 intergenic not near genes chr3R 8630969 intergenic not near genes chr3R 8631023 intergenic not near genes chr3R_4_8630001 chr3R_8630001 RAL-884 865 chr3R 8689605 8689629 chr3R 8689683 8689706 6 75 12.0 11.5 11.8 0.5 101 chr3R 8689605 intergenic not near genes chr3R 8689656 intergenic not near genes chr3R 8689706 intergenic not near genes chr3R_6_8685001 chr3R_8685001 RAL-884 866 chr3R 8917891 8917909 chr3R 8917970 8917989 5 79 2.5 5.5 4.0 1.0 98 chr3R 8917891 intron pyd - chr3R 8917940 intron pyd - chr3R 8917989 intron pyd - chr3R_5_8915001 chr3R_8915001 RAL-884 867 chr3R 9100856 9100886 chr3R 9101164 9101195 6 305 8.5 10.5 9.5 0.6 339 chr3R 9100856 intron pum - chr3R 9101026 intron pum - chr3R 9101195 intron pum - chr3R_6_9100001 chr3R_9100001 RAL-884 868 chr3R 9182478 9182505 chr3R 9182571 9182599 7 93 6.5 5.5 6.0 1.0 121 chr3R 9182478 intron pum - chr3R 9182538 intron pum - chr3R 9182599 intron pum - chr3R_7_9180001 chr3R_9180001 RAL-884 869 chr3R 9319591 9319608 chr3R 9320009 9320032 jockey 6 427 3.0 3.0 3.0 1.5 441 chr3R 9319591 intron CG8861 - chr3R 9319812 intron CG8861 - chr3R 9320032 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-884 870 chr3R 9382821 9382849 chr3R 9382941 9382969 5 123 7.5 2.0 4.8 0.9 148 chr3R 9382821 intron FER - chr3R 9382895 intron FER - chr3R 9382969 intron FER - chr3R_5_9380001 chr3R_9380001 RAL-884 871 chr3R 9823889 9823925 chr3R 9823966 9823997 6 76 3.0 4.5 3.8 1.2 108 chr3R 9823889 intergenic CG34302 -,CR42858 - chr3R 9823943 intergenic CG34302 -,CR42858 - chr3R 9823997 intergenic CG34302 -,CR42858 - chr3R_6_9820001 chr3R_9820001 RAL-884 872 chr3R 9836879 9836893 chr3R 9836967 9836979 6 87 6.0 5.5 5.8 0.9 100 chr3R 9836879 intron Teh1 - chr3R 9836929 intron Teh1 - chr3R 9836979 intron Teh1 - chr3R_6_9835001 chr3R_9835001 RAL-884 873 chr3R 9898788 9899041 chr3R 9898879 9899128 7 88 5.5 6.5 6.0 1.0 340 chr3R 9898788 intron Glut4EF + chr3R 9898958 intron Glut4EF + chr3R 9899128 intron Glut4EF + chr3R_7_9895001 chr3R_9895001 RAL-884 874 chr3R 10073775 10073800 chr3R 10073884 10073908 4 109 1.0 4.5 2.8 1.1 133 chr3R 10073775 intergenic nerfin-2 +,CG5361 - chr3R 10073842 3` UTR CG5361 - chr3R 10073908 exon CG5361 - chr3R_4_10070001 chr3R_10070001 RAL-884 875 chr3R 10683550 10683585 chr3R 10683663 10683694 12 108 1.0 0.0 0.5 8.0 144 chr3R 10683550 intron CR44230 + chr3R 10683622 intron CR44230 + chr3R 10683694 5` UTR CR44230 + chr3R_12_10680001 chr3R_10680001 RAL-884 876 chr3R 10723768 10723791 chr3R 10723860 10723882 4 86 9.5 8.5 9.0 0.4 114 chr3R 10723768 intergenic not near genes chr3R 10723825 intergenic not near genes chr3R 10723882 intergenic not near genes chr3R_4_10720001 chr3R_10720001 RAL-884 877 chr3R 10727648 10727679 chr3R 10727721 10727759 4 73 6.0 8.5 7.2 0.5 111 chr3R 10727648 intergenic not near genes chr3R 10727704 intergenic not near genes chr3R 10727759 intergenic not near genes chr3R_4_10725001 chr3R_10725001 RAL-884 878 chr3R 10919685 10919716 chr3R 10919761 10919778 6 75 3.0 3.0 3.0 1.5 93 chr3R 10919685 intergenic not near genes chr3R 10919732 intergenic not near genes chr3R 10919778 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-884 879 chr3R 10920055 10920077 chr3R 10920132 10920139 7 75 3.0 4.5 3.8 1.5 84 chr3R 10920055 intergenic not near genes chr3R 10920097 intergenic not near genes chr3R 10920139 intergenic not near genes chr3R_7_10920001 chr3R_10920001 RAL-884 880 chr3R 10994002 10994296 chr3R 10994103 10994371 4 83 5.5 4.0 4.8 0.7 369 chr3R 10994002 intron CG34114 + chr3R 10994186 intron CG34114 + chr3R 10994371 intron CG34114 + chr3R_4_10990001 chr3R_10990001 RAL-884 881 chr3R 11078953 11078978 chr3R 11079031 11079053 5 78 6.5 8.0 7.2 0.6 100 chr3R 11078953 intergenic not near genes chr3R 11079003 intergenic not near genes chr3R 11079053 intergenic not near genes chr3R_5_11075001 chr3R_11075001 RAL-884 882 chr3R 11085462 11085492 chr3R 11085536 11085569 8 76 6.0 8.0 7.0 1.0 107 chr3R 11085462 3` UTR CR44940 - chr3R 11085516 intergenic CR44940 - chr3R 11085569 intergenic CR44940 - chr3R_8_11085001 chr3R_11085001 RAL-884 883 chr3R 11102335 11102355 chr3R 11102416 11102436 7 79 6.5 4.5 5.5 1.1 101 chr3R 11102335 intergenic not near genes chr3R 11102386 intergenic not near genes chr3R 11102436 intergenic not near genes chr3R_7_11100001 chr3R_11100001 RAL-884 884 chr3R 11155046 11155068 chr3R 11155123 11155146 4 78 5.0 7.5 6.2 0.6 100 chr3R 11155046 intron Ugt86Dc + chr3R 11155096 intron Ugt86Dc + chr3R 11155146 intron Ugt86Dc + chr3R_4_11155001 chr3R_11155001 RAL-884 885 chr3R 11313232 11313257 chr3R 11313320 11313334 4 86 6.5 6.0 6.2 0.6 102 chr3R 11313232 intergenic not near genes chr3R 11313283 intergenic not near genes chr3R 11313334 intergenic not near genes chr3R_4_11310001 chr3R_11310001 RAL-884 886 chr3R 11342541 11342574 chr3R 11342617 11342645 6 74 8.0 6.0 7.0 0.8 104 chr3R 11342541 intron pros + chr3R 11342593 intron pros + chr3R 11342645 intron pros + chr3R_6_11340001 chr3R_11340001 RAL-884 887 chr3R 11345645 11345671 chr3R 11345744 11345770 4 94 10.0 9.5 9.8 0.4 125 chr3R 11345645 intron pros + chr3R 11345708 intron pros + chr3R 11345770 intron pros + chr3R_4_11345001 chr3R_11345001 RAL-884 888 chr3R 11379234 11379259 chr3R 11388389 11388389 roo 4 9149 2.5 1.0 1.8 1.4 9155 chr3R 11379234 intron pros + chr3R 11383812 intron pros + chr3R 11388389 intron pros + chr3R_4_11380001 chr3R_11380001 RAL-884 889 chr3R 11476958 11476971 chr3R 11477060 11477070 4 101 2.5 3.0 2.8 1.1 112 chr3R 11476958 intergenic not near genes chr3R 11477014 intergenic not near genes chr3R 11477070 intergenic not near genes chr3R_4_11475001 chr3R_11475001 RAL-884 890 chr3R 11571820 11571849 chr3R 11571916 11571945 8 94 10.0 2.5 6.2 1.1 125 chr3R 11571820 intron Mrp4 + chr3R 11571882 intron Mrp4 + chr3R 11571945 intron Mrp4 + chr3R_8_11570001 chr3R_11570001 RAL-884 891 chr3R 11694732 11694755 chr3R 11694824 11694848 7 91 2.5 1.5 2.0 2.3 116 chr3R 11694732 intergenic Fer3 - chr3R 11694790 intergenic Fer3 - chr3R 11694848 intergenic not near genes chr3R_7_11690001 chr3R_11690001 RAL-884 892 chr3R 11734161 11734187 chr3R 11734280 11734290 6 112 4.0 2.5 3.2 1.4 129 chr3R 11734161 intergenic not near genes chr3R 11734226 intergenic not near genes chr3R 11734290 intergenic not near genes chr3R_6_11730001 chr3R_11730001 RAL-884 893 chr3R 11841059 11841099 chr3R 11846250 11846265 BS 13 5184 1.5 1.0 1.2 5.9 5206 chr3R 11841059 intron CG6959 - chr3R 11843662 intron CG6959 - chr3R 11846265 intron CG6959 - chr3R_13_11840001 chr3R_11840001 RAL-884 894 chr3R 12111899 12111924 chr3R 12111975 12111999 4 75 6.5 8.5 7.5 0.5 100 chr3R 12111899 intergenic dpr17 + chr3R 12111949 intergenic not near genes chr3R 12111999 intergenic not near genes chr3R_4_12110001 chr3R_12110001 RAL-884 895 chr3R 12214345 12214371 chr3R 12214430 12214462 4 89 8.5 8.5 8.5 0.4 117 chr3R 12214345 3` UTR CG4848 - chr3R 12214404 3` UTR CG4848 - chr3R 12214462 3` UTR CG4848 - chr3R_4_12210001 chr3R_12210001 RAL-884 896 chr3R 12269182 12269196 chr3R 12269287 12269301 7 104 6.5 15.5 11.0 0.6 119 chr3R 12269182 intron,5` UTR svp +,CR44039 + chr3R 12269242 intron,5` UTR svp +,CR44039 + chr3R 12269301 intron,5` UTR svp +,CR44039 + chr3R_7_12265001 chr3R_12265001 RAL-884 897 chr3R 12282235 12282254 chr3R 12282318 12282337 4 83 15.5 10.5 13.0 0.3 102 chr3R 12282235 intron svp + chr3R 12282286 intron svp + chr3R 12282337 intron svp + chr3R_4_12280001 chr3R_12280001 RAL-884 898 chr3R 12319249 12319260 chr3R 12319349 12319368 4 107 9.5 9.0 9.2 0.4 119 chr3R 12319249 intergenic not near genes chr3R 12319308 intergenic not near genes chr3R 12319368 intergenic not near genes chr3R_4_12315001 chr3R_12315001 RAL-884 899 chr3R 12546453 12546487 chr3R 12546536 12546570 4 78 8.0 7.0 7.5 0.5 117 chr3R 12546453 intron Octbeta3R - chr3R 12546512 intron Octbeta3R - chr3R 12546570 intron Octbeta3R - chr3R_4_12545001 chr3R_12545001 RAL-884 900 chr3R 12766409 12766437 chr3R 12766492 12766513 4 76 5.0 6.5 5.8 0.6 104 chr3R 12766409 intron beat-Vc - chr3R 12766461 intron beat-Vc - chr3R 12766513 intron beat-Vc - chr3R_4_12765001 chr3R_12765001 RAL-884 901 chr3R 12920167 12920183 chr3R 12925360 12925384 copia 7 5197 5.0 5.0 5.0 1.2 5217 chr3R 12920167 intron beat-Vb + chr3R 12922776 intron beat-Vb + chr3R 12925384 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-884 902 chr3R 13143042 13143065 chr3R 13148617 13148619 mdg3 5 5568 3.0 5.0 4.0 1.0 5577 chr3R 13143042 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145830 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148619 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-884 903 chr3R 13195960 13195977 chr3R 13196055 13196072 4 95 9.0 10.5 9.8 0.4 112 chr3R 13195960 intergenic not near genes chr3R 13196016 intergenic not near genes chr3R 13196072 intergenic not near genes chr3R_4_13195001 chr3R_13195001 RAL-884 904 chr3R 13248650 13248674 chr3R 13248749 13248773 5 99 5.0 4.5 4.8 0.9 123 chr3R 13248650 intron Ace - chr3R 13248712 intron Ace - chr3R 13248773 intron Ace - chr3R_5_13245001 chr3R_13245001 RAL-884 905 chr3R 13260737 13260748 chr3R 13260856 13260864 4 122 4.5 5.0 4.8 0.7 127 chr3R 13260737 intron CG11686 + chr3R 13260800 intron CG11686 + chr3R 13260864 intron CG11686 + chr3R_4_13260001 chr3R_13260001 RAL-884 906 chr3R 13323961 13323990 chr3R 13324072 13324101 9 108 8.0 6.0 7.0 1.1 140 chr3R 13323961 intergenic not near genes chr3R 13324031 intergenic not near genes chr3R 13324101 intergenic not near genes chr3R_9_13320001 chr3R_13320001 RAL-884 907 chr3R 13391642 13391658 chr3R 13391720 13391736 4 77 8.5 9.5 9.0 0.4 94 chr3R 13391642 intron CCHa2 - chr3R 13391689 intron CCHa2 - chr3R 13391736 intron CCHa2 - chr3R_4_13390001 chr3R_13390001 RAL-884 908 chr3R 13693028 13693028 chr3R 21907534 21907535 8 8214507 8.5 20.0 14.2 0.5 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_8_17800001 chr3R_17800001 RAL-884 909 chr3R 13749221 13749248 chr3R 13749296 13749322 4 72 4.5 5.5 5.0 0.7 101 chr3R 13749221 intron CG34383 + chr3R 13749272 intron CG34383 + chr3R 13749322 intron CG34383 + chr3R_4_13745001 chr3R_13745001 RAL-884 910 chr3R 13863681 13863712 chr3R 13863769 13863799 6 88 9.5 10.0 9.8 0.6 118 chr3R 13863681 intergenic not near genes chr3R 13863740 intergenic not near genes chr3R 13863799 intergenic not near genes chr3R_6_13860001 chr3R_13860001 RAL-884 911 chr3R 13941421 13941449 chr3R 13941501 13941529 6 78 1.5 1.5 1.5 2.4 108 chr3R 13941421 intergenic not near genes chr3R 13941475 intergenic not near genes chr3R 13941529 intergenic not near genes chr3R_6_13940001 chr3R_13940001 RAL-884 912 chr3R 13994301 13994329 chr3R 13994556 13994583 5 251 2.0 10.5 6.2 0.7 282 chr3R 13994301 intron rdx - chr3R 13994442 intron rdx - chr3R 13994583 intron rdx - chr3R_5_13990001 chr3R_13990001 RAL-884 913 chr3R 14021659 14021677 chr3R 14023472 14023474 S-element 5 1811 1.0 3.5 2.2 1.6 1815 chr3R 14021659 intron rdx - chr3R 14022566 intron rdx - chr3R 14023474 intron rdx - chr3R_5_14020001 chr3R_14020001 RAL-884 914 chr3R 14246415 14246418 chr3R 14247882 14247902 jockey 5 1478 2.5 2.5 2.5 1.4 1487 chr3R 14246415 intergenic not near genes chr3R 14247158 intergenic not near genes chr3R 14247902 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-884 915 chr3R 14327703 14327723 chr3R 14327785 14327805 4 82 5.5 6.0 5.8 0.6 102 chr3R 14327703 3` UTR CG3321 + chr3R 14327754 intergenic CG3321 +,spn-B + chr3R 14327805 intergenic CG3321 +,spn-B + chr3R_4_14325001 chr3R_14325001 RAL-884 916 chr3R 14364060 14364081 chr3R 14364135 14364157 4 74 9.0 4.5 6.8 0.5 97 chr3R 14364060 intron NK7.1 - chr3R 14364108 intron NK7.1 - chr3R 14364157 intron NK7.1 - chr3R_4_14360001 chr3R_14360001 RAL-884 917 chr3R 14486196 14486213 chr3R 14486266 14486277 4 66 10.0 12.0 11.0 0.3 81 chr3R 14486196 intergenic not near genes chr3R 14486236 intergenic not near genes chr3R 14486277 intergenic not near genes chr3R_4_14485001 chr3R_14485001 RAL-884 918 chr3R 14497417 14497435 chr3R 14497497 14497516 4 80 5.0 6.5 5.8 0.6 99 chr3R 14497417 intron CR44177 + chr3R 14497466 intron CR44177 + chr3R 14497516 intron CR44177 + chr3R_4_14495001 chr3R_14495001 RAL-884 919 chr3R 14520441 14520470 chr3R 14520541 14520570 4 100 8.5 8.5 8.5 0.4 129 chr3R 14520441 intron Pde6 - chr3R 14520506 intron Pde6 - chr3R 14520570 intron Pde6 - chr3R_4_14520001 chr3R_14520001 RAL-884 920 chr3R 14560661 14560690 chr3R 14560856 14560885 4 195 0.5 1.0 0.8 2.2 224 chr3R 14560661 intergenic CG14850 + chr3R 14560773 intergenic CG14850 + chr3R 14560885 intergenic CG14850 + chr3R_4_14560001 chr3R_14560001 RAL-884 921 chr3R 14612440 14612471 chr3R 14612559 14612591 4 120 10.5 7.5 9.0 0.4 151 chr3R 14612440 intron CG14853 + chr3R 14612516 intron CG14853 + chr3R 14612591 intron CG14853 + chr3R_4_14610001 chr3R_14610001 RAL-884 922 chr3R 14704410 14704418 chr3R 14704463 14704495 7 69 3.0 3.0 3.0 1.8 85 chr3R 14704410 intron kibra - chr3R 14704452 intron kibra - chr3R 14704495 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-884 923 chr3R 15132062 15132075 chr3R 15135119 15135135 Juan 6 3059 4.0 6.0 5.0 1.0 3073 chr3R 15132062 intergenic CG42788 - chr3R 15133598 intergenic not near genes chr3R 15135135 intergenic CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-884 924 chr3R 15416248 15416278 chr3R 15416328 15416358 4 80 2.0 3.0 2.5 1.1 110 chr3R 15416248 3` UTR Atx2 + chr3R 15416303 3` UTR Atx2 + chr3R 15416358 3` UTR Atx2 + chr3R_4_15415001 chr3R_15415001 RAL-884 925 chr3R 15601163 15601196 chr3R 15608685 15608718 412 11 7517 4.0 3.0 3.5 2.4 7555 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_11_15600001 chr3R_15600001 RAL-884 926 chr3R 15618751 15618763 chr3R 15626203 15626237 blood 6 7470 1.5 1.0 1.2 2.7 7486 chr3R 15618751 intergenic not near genes chr3R 15622494 intergenic not near genes chr3R 15626237 intergenic not near genes chr3R_6_15620001 chr3R_15620001 RAL-884 927 chr3R 15790148 15790294 chr3R 15790242 15790390 27 104 7.5 9.0 8.2 2.9 242 chr3R 15790148 exon c(3)G - chr3R 15790269 exon c(3)G - chr3R 15790390 exon c(3)G - chr3R_27_15790001 chr3R_15790001 RAL-884 928 chr3R 15790384 15790406 chr3R 15790572 15790612 17 192 6.0 15.5 10.8 1.4 228 chr3R 15790384 exon c(3)G - chr3R 15790498 exon c(3)G - chr3R 15790612 exon c(3)G - chr3R_17_15790001 chr3R_15790001 RAL-884 929 chr3R 15790837 15790874 chr3R 15790953 15790990 18 115 17.0 18.0 17.5 1.0 153 chr3R 15790837 exon c(3)G - chr3R 15790914 intron c(3)G - chr3R 15790990 exon c(3)G - chr3R_18_15790001 chr3R_15790001 RAL-884 930 chr3R 15813335 15813356 chr3R 15813410 15813416 6 76 9.0 4.0 6.5 0.8 81 chr3R 15813335 intron alpha-Man-IIb + chr3R 15813376 intron alpha-Man-IIb + chr3R 15813416 intron alpha-Man-IIb + chr3R_6_15810001 chr3R_15810001 RAL-884 931 chr3R 16013129 16013167 chr3R 16013217 16013260 4 90 1.5 3.0 2.2 1.2 131 chr3R 16013129 intron GATAe + chr3R 16013194 intron GATAe + chr3R 16013260 intron GATAe + chr3R_4_16010001 chr3R_16010001 RAL-884 932 chr3R 16472580 16472605 chr3R 16472649 16472665 5 65 6.0 7.5 6.8 0.6 85 chr3R 16472580 intergenic Gyc-89Da + chr3R 16472622 5` UTR Gyc-89Da + chr3R 16472665 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-884 933 chr3R 16756328 16756348 chr3R 16762519 16762535 diver 8 6187 3.0 3.0 3.0 2.0 6207 chr3R 16756328 intron bxd - chr3R 16759432 intron bxd - chr3R 16762535 intron bxd - chr3R_8_16755001 chr3R_16755001 RAL-884 934 chr3R 16860335 16860543 chr3R 16860413 16860666 5 111 1.0 0.0 0.5 3.3 331 chr3R 16860335 intron iab-8 - chr3R 16860500 intron iab-8 - chr3R 16860666 intron iab-8 - chr3R_5_16860001 chr3R_16860001 RAL-884 935 chr3R 16986570 16986581 chr3R 16986659 16986668 4 88 11.5 6.0 8.8 0.4 98 chr3R 16986570 intron CG18622 - chr3R 16986619 intron CG18622 - chr3R 16986668 intron CG18622 - chr3R_4_16985001 chr3R_16985001 RAL-884 936 chr3R 17294660 17294687 chr3R 17295088 17295112 BS 5 427 3.0 0.5 1.8 1.8 452 chr3R 17294660 intergenic not near genes chr3R 17294886 intergenic not near genes chr3R 17295112 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-884 937 chr3R 17301385 17301402 chr3R 17301588 17301605 4 204 7.0 10.5 8.8 0.4 220 chr3R 17301385 intergenic not near genes chr3R 17301495 intergenic not near genes chr3R 17301605 intergenic not near genes chr3R_4_17300001 chr3R_17300001 RAL-884 938 chr3R 17346701 17346719 chr3R 17348264 17348267 F-element 5 1560 2.0 6.5 4.2 1.0 1566 chr3R 17346701 intron beat-IIa - chr3R 17347484 intron beat-IIa - chr3R 17348267 intron beat-IIa - chr3R_5_17345001 chr3R_17345001 RAL-884 939 chr3R 17389054 17389054 chr3R 21907534 21907536 5 4518481 10.0 20.0 15.0 0.3 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-884 940 chr3R 17521579 17521589 chr3R 17521719 17521734 6 151 3.0 6.5 4.8 1.0 155 chr3R 17521579 intergenic not near genes chr3R 17521656 intergenic not near genes chr3R 17521734 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-884 941 chr3R 17524790 17524925 chr3R 17524863 17524990 4 73 4.0 2.5 3.2 1.0 200 chr3R 17524790 intergenic not near genes chr3R 17524890 intergenic not near genes chr3R 17524990 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-884 942 chr3R 17904016 17904025 chr3R 17904096 17904126 4 91 8.0 9.0 8.5 0.4 110 chr3R 17904016 intron Rim - chr3R 17904071 intron Rim - chr3R 17904126 intron Rim - chr3R_4_17900001 chr3R_17900001 RAL-884 943 chr3R 17925862 17925889 chr3R 17927317 17927356 hobo 11 1464 2.0 5.0 3.5 2.4 1494 chr3R 17925862 intron cpo + chr3R 17926609 intron cpo + chr3R 17927356 intron cpo + chr3R_11_17925001 chr3R_17925001 RAL-884 944 chr3R 18025334 18025362 chr3R 18025415 18025442 4 81 3.0 2.0 2.5 1.1 108 chr3R 18025334 3` UTR CG7794 + chr3R 18025388 intergenic CG7794 + chr3R 18025442 intergenic CG7794 + chr3R_4_18025001 chr3R_18025001 RAL-884 945 chr3R 18078165 18078185 chr3R 18078244 18078251 4 75 5.0 4.5 4.8 0.7 86 chr3R 18078165 intergenic not near genes chr3R 18078208 intergenic not near genes chr3R 18078251 intergenic not near genes chr3R_4_18075001 chr3R_18075001 RAL-884 946 chr3R 18338996 18339008 chr3R 18339100 18339112 4 104 1.5 2.0 1.8 1.4 116 chr3R 18338996 intron CG15803 - chr3R 18339054 intron CG15803 - chr3R 18339112 intron CG15803 - chr3R_4_18335001 chr3R_18335001 RAL-884 947 chr3R 18606509 18606531 chr3R 18610740 18610746 F-element 9 4228 1.5 1.0 1.2 4.1 4237 chr3R 18606509 intron,intron qin +,CG14304 - chr3R 18608628 intron,intron qin +,CG14304 - chr3R 18610746 intron,intron qin +,CG14304 - chr3R_9_18605001 chr3R_18605001 RAL-884 948 chr3R 18703292 18703312 chr3R 18703399 18703420 4 108 1.0 2.5 1.8 1.4 128 chr3R 18703292 intergenic not near genes chr3R 18703356 intergenic not near genes chr3R 18703420 intergenic not near genes chr3R_4_18700001 chr3R_18700001 RAL-884 949 chr3R 18766776 18766810 chr3R 18766854 18766881 9 77 7.5 8.5 8.0 1.0 105 chr3R 18766776 intron CG7720 - chr3R 18766828 intron CG7720 - chr3R 18766881 intron CG7720 - chr3R_9_18765001 chr3R_18765001 RAL-884 950 chr3R 18781691 18781715 chr3R 18781767 18781773 4 72 6.0 1.0 3.5 0.9 82 chr3R 18781691 intron CG7720 - chr3R 18781732 intron CG7720 - chr3R 18781773 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-884 951 chr3R 18802129 18802159 chr3R 18802214 18802243 9 82 1.5 4.0 2.8 2.4 114 chr3R 18802129 3` UTR CG18208 - chr3R 18802186 3` UTR CG18208 - chr3R 18802243 3` UTR CG18208 - chr3R_9_18800001 chr3R_18800001 RAL-884 952 chr3R 18812077 18812109 chr3R 18812154 18812187 24 75 3.5 3.0 3.2 5.7 110 chr3R 18812077 intron CG18208 - chr3R 18812132 intron CG18208 - chr3R 18812187 intron CG18208 - chr3R_24_18810001 chr3R_18810001 RAL-884 953 chr3R 18859858 18859886 chr3R 18860097 18860125 8 237 8.5 7.5 8.0 0.9 267 chr3R 18859858 intergenic not near genes chr3R 18859992 intergenic not near genes chr3R 18860125 intergenic not near genes chr3R_8_18855001 chr3R_18855001 RAL-884 954 chr3R 19077223 19077248 chr3R 19077540 19077547 5 313 12.0 11.5 11.8 0.4 324 chr3R 19077223 intron cdi - chr3R 19077385 intron cdi - chr3R 19077547 intron cdi - chr3R_5_19075001 chr3R_19075001 RAL-884 955 chr3R 19113006 19113028 chr3R 19113112 19113134 4 106 4.5 6.0 5.2 0.6 128 chr3R 19113006 intron CG6040 + chr3R 19113070 intron CG6040 + chr3R 19113134 intron CG6040 + chr3R_4_19110001 chr3R_19110001 RAL-884 956 chr3R 19140286 19140300 chr3R 19140715 19140748 4 436 7.5 8.0 7.8 0.5 462 chr3R 19140286 3` UTR Ppcs - chr3R 19140517 3` UTR Ppcs - chr3R 19140748 3` UTR Ppcs - chr3R_4_19140001 chr3R_19140001 RAL-884 957 chr3R 19702323 19702345 chr3R 19702405 19702427 4 82 4.5 2.5 3.5 0.9 104 chr3R 19702323 intergenic not near genes chr3R 19702375 intergenic not near genes chr3R 19702427 intergenic not near genes chr3R_4_19700001 chr3R_19700001 RAL-884 958 chr3R 19953965 19953979 chr3R 19954035 19954044 5 69 10.5 9.5 10.0 0.5 79 chr3R 19953965 intron Hs6st - chr3R 19954004 intron Hs6st - chr3R 19954044 intron Hs6st - chr3R_5_19950001 chr3R_19950001 RAL-884 959 chr3R 20109536 20109568 chr3R 20114742 20114774 copia 6 5206 0.0 0.5 0.2 5.0 5238 chr3R 20109536 intergenic not near genes chr3R 20112155 intergenic not near genes chr3R 20114774 intergenic CG10887 + chr3R_6_20110001 chr3R_20110001 RAL-884 960 chr3R 20155609 20155644 chr3R 20155686 20155721 8 74 9.0 8.5 8.8 0.8 112 chr3R 20155609 intergenic not near genes chr3R 20155665 intergenic not near genes chr3R 20155721 intergenic not near genes chr3R_8_20155001 chr3R_20155001 RAL-884 961 chr3R 20240277 20240303 chr3R 20240626 20240652 4 349 8.5 7.5 8.0 0.4 375 chr3R 20240277 intron Nlg4 + chr3R 20240464 intron Nlg4 + chr3R 20240652 intron Nlg4 + chr3R_4_20240001 chr3R_20240001 RAL-884 962 chr3R 20266521 20266544 chr3R 20272988 20273015 Burdock 4 6466 1.0 1.5 1.2 1.8 6494 chr3R 20266521 intron cic + chr3R 20269768 intron cic + chr3R 20273015 intron cic + chr3R_4_20265001 chr3R_20265001 RAL-884 963 chr3R 20391761 20391774 chr3R 20391857 20391870 4 96 8.5 5.5 7.0 0.5 109 chr3R 20391761 intron Gfrl - chr3R 20391816 intron Gfrl - chr3R 20391870 intron Gfrl - chr3R_4_20390001 chr3R_20390001 RAL-884 964 chr3R 20469288 20469455 chr3R 20469385 20469538 5 91 0.0 0.0 0.0 5.0 250 chr3R 20469288 intron Gfrl - chr3R 20469413 intron Gfrl - chr3R 20469538 intron Gfrl - chr3R_5_20465001 chr3R_20465001 RAL-884 965 chr3R 20687797 20687819 chr3R 20687870 20687884 6 72 14.0 11.0 12.5 0.4 87 chr3R 20687797 intergenic not near genes chr3R 20687840 intergenic not near genes chr3R 20687884 intergenic not near genes chr3R_6_20685001 chr3R_20685001 RAL-884 966 chr3R 20722852 20722883 chr3R 20722979 20723010 5 127 7.5 4.5 6.0 0.7 158 chr3R 20722852 intergenic not near genes chr3R 20722931 intergenic not near genes chr3R 20723010 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-884 967 chr3R 20733760 20733790 chr3R 20733850 20733882 7 89 12.0 10.5 11.2 0.6 122 chr3R 20733760 intergenic not near genes chr3R 20733821 intergenic not near genes chr3R 20733882 intergenic not near genes chr3R_7_20730001 chr3R_20730001 RAL-884 968 chr3R 20764433 20764440 chr3R 20764506 20764536 4 89 5.5 4.0 4.8 0.7 103 chr3R 20764433 intron Syp + chr3R 20764484 intron Syp + chr3R 20764536 intron Syp + chr3R_4_20760001 chr3R_20760001 RAL-884 969 chr3R 21014028 21014043 chr3R 21014106 21014120 4 77 3.5 2.5 3.0 1.0 92 chr3R 21014028 3` UTR Calx + chr3R 21014074 3` UTR Calx + chr3R 21014120 3` UTR Calx + chr3R_4_21010001 chr3R_21010001 RAL-884 970 chr3R 21108041 21108061 chr3R 21108302 21108321 4 260 1.0 1.0 1.0 2.0 280 chr3R 21108041 intergenic Sec15 -,rtet + chr3R 21108181 intergenic Sec15 -,rtet + chr3R 21108321 intergenic rtet +,Sec15 - chr3R_4_21105001 chr3R_21105001 RAL-884 971 chr3R 21155435 21155453 chr3R 21155536 21155554 4 101 8.5 12.0 10.2 0.4 119 chr3R 21155435 intron SNF4Agamma + chr3R 21155494 intron SNF4Agamma + chr3R 21155554 intron SNF4Agamma + chr3R_4_21155001 chr3R_21155001 RAL-884 972 chr3R 21236471 21236504 chr3R 21236547 21236562 7 73 9.5 10.5 10.0 0.6 91 chr3R 21236471 intron e - chr3R 21236516 intron e - chr3R 21236562 intron e - chr3R_7_21235001 chr3R_21235001 RAL-884 973 chr3R 21385694 21385959 chr3R 21385776 21386036 8 74 1.0 0.5 0.8 4.4 342 chr3R 21385694 intergenic not near genes chr3R 21385865 intergenic not near genes chr3R 21386036 intergenic not near genes chr3R_8_21385001 chr3R_21385001 RAL-884 974 chr3R 21472029 21472035 chr3R 21472093 21472115 5 76 1.5 2.5 2.0 1.7 86 chr3R 21472029 intergenic not near genes chr3R 21472072 intergenic not near genes chr3R 21472115 intergenic not near genes chr3R_5_21470001 chr3R_21470001 RAL-884 975 chr3R 21609007 21609042 chr3R 21611641 21611655 NOF 7 2626 3.0 11.0 7.0 0.9 2648 chr3R 21609007 intron InR - chr3R 21610331 intron InR - chr3R 21611655 intron InR - chr3R_7_21610001 chr3R_21610001 RAL-884 976 chr3R 21761134 21761146 chr3R 21768511 21768520 mdg1 4 7384 6.5 4.0 5.2 0.6 7386 chr3R 21761134 exon CG42335 + chr3R 21764827 intron CG42335 + chr3R 21768520 exon CG42335 + chr3R_4_21760001 chr3R_21760001 RAL-884 977 chr3R 21784862 21784879 chr3R 21784960 21784969 4 96 3.5 4.0 3.8 0.8 107 chr3R 21784862 3` UTR,3` UTR CASK -,CRG - chr3R 21784916 3` UTR,3` UTR CASK -,CRG - chr3R 21784969 3` UTR,3` UTR CASK -,CRG - chr3R_4_21780001 chr3R_21780001 RAL-884 978 chr3R 8339246 8339247 chr3R 21907534 21907534 6 13568288 14.5 20.0 17.2 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-884 979 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 10.0 20.0 15.0 0.2 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-884 980 chr3R 21907534 21907534 chr3R 28831799 28831802 13 6924268 25.0 18.0 21.5 0.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_13_25365001 chr3R_25365001 RAL-884 981 chr3R 8339246 8339247 chr3R 21907535 21907535 8 13568288 14.5 20.0 17.2 0.4 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_8_15120001 chr3R_15120001 RAL-884 982 chr3R 21907535 21907535 chr3R 28831801 28831802 30 6924266 25.5 18.0 21.8 1.3 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_30_25365001 chr3R_25365001 RAL-884 983 chr3R 21907536 21907536 chr3R 28831801 28831802 36 6924266 25.0 18.0 21.5 1.6 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_36_25365001 chr3R_25365001 RAL-884 984 chr3R 21927358 21927385 chr3R 21927797 21927819 6 435 7.0 11.5 9.2 0.6 461 chr3R 21927358 intergenic not near genes chr3R 21927588 intergenic not near genes chr3R 21927819 intergenic not near genes chr3R_6_21925001 chr3R_21925001 RAL-884 985 chr3R 22092297 22092326 chr3R 22092375 22092385 5 74 7.5 8.5 8.0 0.6 88 chr3R 22092297 intron CG5778 - chr3R 22092341 intron CG5778 - chr3R 22092385 intron CG5778 - chr3R_5_22090001 chr3R_22090001 RAL-884 986 chr3R 22234684 22234715 chr3R 22236003 22236016 pogo 6 1312 1.0 1.0 1.0 3.0 1332 chr3R 22234684 intron SKIP + chr3R 22235350 intron SKIP + chr3R 22236016 intron SKIP + chr3R_6_22235001 chr3R_22235001 RAL-884 987 chr3R 22292492 22292503 chr3R 22292572 22292583 4 80 11.0 10.5 10.8 0.3 91 chr3R 22292492 intron SKIP + chr3R 22292538 intron SKIP + chr3R 22292583 intron SKIP + chr3R_4_22290001 chr3R_22290001 RAL-884 988 chr3R 22507798 22507813 chr3R 22507871 22507897 4 76 6.5 8.5 7.5 0.5 99 chr3R 22507798 intron Octbeta1R + chr3R 22507848 intron Octbeta1R + chr3R 22507897 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-884 989 chr3R 22769100 22769126 chr3R 22769166 22769203 6 73 1.0 2.5 1.8 2.1 103 chr3R 22769100 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769152 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769203 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_6_22765001 chr3R_22765001 RAL-884 990 chr3R 22825506 22825532 chr3R 22825594 22825611 4 86 8.5 5.0 6.8 0.5 105 chr3R 22825506 3` UTR CR44350 - chr3R 22825558 3` UTR CR44350 - chr3R 22825611 3` UTR CR44350 - chr3R_4_22825001 chr3R_22825001 RAL-884 991 chr3R 22830187 22830200 chr3R 22831127 22831149 4 942 15.5 16.5 16.0 0.2 962 chr3R 22830187 intergenic not near genes chr3R 22830668 intergenic not near genes chr3R 22831149 intergenic not near genes chr3R_4_22830001 chr3R_22830001 RAL-884 992 chr3R 22833354 22833364 chr3R 22833424 22833454 5 83 3.0 2.5 2.8 1.3 100 chr3R 22833354 intergenic not near genes chr3R 22833404 intergenic not near genes chr3R 22833454 intergenic not near genes chr3R_5_22830001 chr3R_22830001 RAL-884 993 chr3R 22880933 22880958 chr3R 22881071 22881096 4 138 1.5 0.5 1.0 2.0 163 chr3R 22880933 intergenic not near genes chr3R 22881014 intergenic not near genes chr3R 22881096 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-884 994 chr3R 22954332 22954362 chr3R 22954408 22954427 5 73 11.5 12.5 12.0 0.4 95 chr3R 22954332 intron klg + chr3R 22954380 intron klg + chr3R 22954427 intron klg + chr3R_5_22950001 chr3R_22950001 RAL-884 995 chr3R 23073657 23073685 chr3R 23073745 23073753 7 83 9.0 6.5 7.8 0.8 96 chr3R 23073657 intron CG13830 - chr3R 23073705 intron CG13830 - chr3R 23073753 intron CG13830 - chr3R_7_23070001 chr3R_23070001 RAL-884 996 chr3R 23171817 23171823 chr3R 23171874 23171902 4 71 8.0 7.0 7.5 0.5 85 chr3R 23171817 intron Irk1 + chr3R 23171860 intron Irk1 + chr3R 23171902 intron Irk1 + chr3R_4_23170001 chr3R_23170001 RAL-884 997 chr3R 23291248 23291274 chr3R 23291334 23291359 6 79 11.5 10.5 11.0 0.5 111 chr3R 23291248 3` UTR pnt - chr3R 23291304 3` UTR pnt - chr3R 23291359 3` UTR pnt - chr3R_6_23290001 chr3R_23290001 RAL-884 998 chr3R 23385589 23385617 chr3R 23385711 23385733 4 120 2.0 1.0 1.5 1.6 144 chr3R 23385589 intergenic not near genes chr3R 23385661 intergenic not near genes chr3R 23385733 intergenic not near genes chr3R_4_23385001 chr3R_23385001 RAL-884 999 chr3R 23556307 23556339 chr3R 23556408 23556442 5 93 9.0 12.0 10.5 0.4 135 chr3R 23556307 5` UTR CG10164 - chr3R 23556374 5` UTR CG10164 - chr3R 23556442 5` UTR CG10164 - chr3R_5_23555001 chr3R_23555001 RAL-884 1000 chr3R 23558398 23558429 chr3R 23560179 23560210 Bari1 7 1781 0.5 2.0 1.2 3.2 1812 chr3R 23558398 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560210 intron beat-IV + chr3R_7_23555001 chr3R_23555001 RAL-884 1001 chr3R 23629833 23629852 chr3R 23629895 23629931 4 66 4.0 4.5 4.2 0.8 98 chr3R 23629833 intron CG31145 - chr3R 23629882 intron CG31145 - chr3R 23629931 intron CG31145 - chr3R_4_23625001 chr3R_23625001 RAL-884 1002 chr3R 24054902 24054926 chr3R 24054982 24054986 4 77 6.0 6.0 6.0 0.6 84 chr3R 24054902 exon,5` UTR CG6000 +,CR44097 + chr3R 24054944 exon,5` UTR CG6000 +,CR44097 + chr3R 24054986 3` UTR,5` UTR CG6000 +,CR44097 + chr3R_4_24050001 chr3R_24050001 RAL-884 1003 chr3R 24072088 24072111 chr3R 24072525 24072548 jockey 6 436 5.0 2.0 3.5 1.3 460 chr3R 24072088 intron 4EHP - chr3R 24072318 intron 4EHP - chr3R 24072548 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-884 1004 chr3R 24207212 24207241 chr3R 24212289 24212317 flea 5 5076 4.0 1.5 2.8 1.3 5105 chr3R 24207212 intron twin - chr3R 24209764 intron twin - chr3R 24212317 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-884 1005 chr3R 24261151 24261187 chr3R 24261238 24261274 10 82 9.0 10.0 9.5 1.0 123 chr3R 24261151 intron jar - chr3R 24261212 intron jar - chr3R 24261274 intron jar - chr3R_10_24260001 chr3R_24260001 RAL-884 1006 chr3R 24434240 24434269 chr3R 24434318 24434327 4 70 2.5 1.5 2.0 1.3 87 chr3R 24434240 intron nAChRalpha1 - chr3R 24434284 intron nAChRalpha1 - chr3R 24434327 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-884 1007 chr3R 24493277 24493298 chr3R 24493503 24493520 BS 7 224 3.0 3.5 3.2 1.7 243 chr3R 24493277 intergenic not near genes chr3R 24493398 intergenic not near genes chr3R 24493520 intergenic not near genes chr3R_7_24490001 chr3R_24490001 RAL-884 1008 chr3R 24927135 24927161 chr3R 24931913 24931936 Doc 4 4778 0.5 1.0 0.8 2.2 4801 chr3R 24927135 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931936 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-884 1009 chr3R 25027553 25027569 chr3R 25027766 25027782 5 211 9.5 7.5 8.5 0.5 229 chr3R 25027553 intron Hr96 + chr3R 25027668 intron Hr96 + chr3R 25027782 intron Hr96 + chr3R_5_25025001 chr3R_25025001 RAL-884 1010 chr3R 25159797 25159816 chr3R 25159927 25159946 5 127 5.0 5.5 5.2 0.8 149 chr3R 25159797 intergenic not near genes chr3R 25159872 intergenic not near genes chr3R 25159946 intergenic not near genes chr3R_5_25155001 chr3R_25155001 RAL-884 1011 chr3R 25512393 25512426 chr3R 25512472 25512503 5 74 7.0 8.5 7.8 0.6 110 chr3R 25512393 intergenic not near genes chr3R 25512448 intergenic not near genes chr3R 25512503 intergenic not near genes chr3R_5_25510001 chr3R_25510001 RAL-884 1012 chr3R 25612913 25612939 chr3R 25612988 25613016 6 74 11.0 14.0 12.5 0.4 103 chr3R 25612913 intron Npl4 - chr3R 25612964 intron Npl4 - chr3R 25613016 intron Npl4 - chr3R_6_25610001 chr3R_25610001 RAL-884 1013 chr3R 25642599 25642621 chr3R 25642679 25642712 4 88 8.5 7.5 8.0 0.4 113 chr3R 25642599 intron jigr1 + chr3R 25642656 intron jigr1 + chr3R 25642712 intron jigr1 + chr3R_4_25640001 chr3R_25640001 RAL-884 1014 chr3R 25669063 25669090 chr3R 25669157 25669181 5 93 4.0 3.5 3.8 1.0 118 chr3R 25669063 intron Lgr3 + chr3R 25669122 intron Lgr3 + chr3R 25669181 intron Lgr3 + chr3R_5_25665001 chr3R_25665001 RAL-884 1015 chr3R 25736747 25736762 chr3R 25736850 25736867 4 106 9.0 15.5 12.2 0.3 120 chr3R 25736747 intron LpR2 - chr3R 25736807 intron LpR2 - chr3R 25736867 intron LpR2 - chr3R_4_25735001 chr3R_25735001 RAL-884 1016 chr3R 25765881 25765907 chr3R 25765958 25765985 4 72 6.0 5.5 5.8 0.6 104 chr3R 25765881 intergenic not near genes chr3R 25765933 intergenic not near genes chr3R 25765985 intergenic not near genes chr3R_4_25765001 chr3R_25765001 RAL-884 1017 chr3R 25832701 25832723 chr3R 25841883 25841905 roo 12 9180 2.5 6.5 4.5 2.2 9204 chr3R 25832701 exon alpha4GT2 + chr3R 25837303 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_12_25835001 chr3R_25835001 RAL-884 1018 chr3R 25864843 25864875 chr3R 25865099 25865133 7 255 7.0 7.5 7.2 0.9 290 chr3R 25864843 intron CG5890 + chr3R 25864988 intron CG5890 + chr3R 25865133 intron CG5890 + chr3R_7_25860001 chr3R_25860001 RAL-884 1019 chr3R 26122462 26122478 chr3R 26122537 26122554 5 74 5.5 4.0 4.8 0.9 92 chr3R 26122462 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122554 intron CG31324 + chr3R_5_26120001 chr3R_26120001 RAL-884 1020 chr3R 26138885 26138900 chr3R 26139432 26139447 4 546 6.5 10.0 8.2 0.4 562 chr3R 26138885 intergenic not near genes chr3R 26139166 intergenic not near genes chr3R 26139447 intergenic not near genes chr3R_4_26135001 chr3R_26135001 RAL-884 1021 chr3R 26239833 26239855 chr3R 26240144 26240166 4 310 10.0 6.5 8.2 0.4 333 chr3R 26239833 intron CR42745 + chr3R 26240000 intron CR42745 + chr3R 26240166 intron CR42745 + chr3R_4_26235001 chr3R_26235001 RAL-884 1022 chr3R 26247250 26247269 chr3R 26247387 26247391 4 132 5.5 4.0 4.8 0.7 141 chr3R 26247250 intron CR42745 + chr3R 26247320 intron CR42745 + chr3R 26247391 intron CR42745 + chr3R_4_26245001 chr3R_26245001 RAL-884 1023 chr3R 26294720 26294749 chr3R 26294798 26294811 7 76 1.5 2.0 1.8 2.5 91 chr3R 26294720 intergenic not near genes chr3R 26294766 intergenic not near genes chr3R 26294811 intergenic not near genes chr3R_7_26290001 chr3R_26290001 RAL-884 1024 chr3R 26339225 26339256 chr3R 26339320 26339324 6 90 6.5 6.0 6.2 0.8 99 chr3R 26339225 intron CG33970 + chr3R 26339274 intron CG33970 + chr3R 26339324 intron CG33970 + chr3R_6_26335001 chr3R_26335001 RAL-884 1025 chr3R 26369020 26369027 chr3R 26369077 26369092 6 71 8.0 6.0 7.0 0.8 72 chr3R 26369020 intergenic not near genes chr3R 26369056 intergenic not near genes chr3R 26369092 intergenic not near genes chr3R_6_26365001 chr3R_26365001 RAL-884 1026 chr3R 26370340 26370360 chr3R 26370424 26370444 6 84 0.5 1.5 1.0 3.0 104 chr3R 26370340 intergenic not near genes chr3R 26370392 intergenic not near genes chr3R 26370444 intergenic not near genes chr3R_6_26370001 chr3R_26370001 RAL-884 1027 chr3R 26376354 26376358 chr3R 26385501 26385518 roo 4 9149 3.5 0.5 2.0 1.3 9164 chr3R 26376354 intergenic not near genes chr3R 26380936 intergenic not near genes chr3R 26385518 intergenic not near genes chr3R_4_26380001 chr3R_26380001 RAL-884 1028 chr3R 26546009 26546022 chr3R 26546189 26546203 4 181 3.5 7.5 5.5 0.6 194 chr3R 26546009 intron scrib + chr3R 26546106 intron scrib + chr3R 26546203 intron scrib + chr3R_4_26545001 chr3R_26545001 RAL-884 1029 chr3R 26558335 26558361 chr3R 26565638 26565659 Stalker4 9 7303 4.0 4.0 4.0 1.8 7324 chr3R 26558335 intron scrib + chr3R 26561997 intron scrib + chr3R 26565659 intron scrib + chr3R_9_26560001 chr3R_26560001 RAL-884 1030 chr3R 26642731 26642756 chr3R 26643124 26643150 jockey 6 393 4.5 2.5 3.5 1.3 419 chr3R 26642731 intergenic not near genes chr3R 26642940 intergenic not near genes chr3R 26643150 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-884 1031 chr3R 26665008 26665022 chr3R 26665082 26665085 4 74 10.0 14.0 12.0 0.3 77 chr3R 26665008 intron beat-VII - chr3R 26665046 intron beat-VII - chr3R 26665085 intron beat-VII - chr3R_4_26665001 chr3R_26665001 RAL-884 1032 chr3R 26685859 26685892 chr3R 26686039 26686072 5 177 6.0 7.0 6.5 0.7 213 chr3R 26685859 intergenic not near genes chr3R 26685966 intergenic not near genes chr3R 26686072 intergenic not near genes chr3R_5_26685001 chr3R_26685001 RAL-884 1033 chr3R 26703498 26703528 chr3R 26703624 26703649 5 122 6.5 7.5 7.0 0.6 151 chr3R 26703498 intron amon - chr3R 26703574 intron amon - chr3R 26703649 intron amon - chr3R_5_26700001 chr3R_26700001 RAL-884 1034 chr3R 26767393 26767394 chr3R 26767442 26767472 4 65 8.5 8.0 8.2 0.4 79 chr3R 26767393 intergenic not near genes chr3R 26767432 intergenic not near genes chr3R 26767472 intergenic not near genes chr3R_4_26765001 chr3R_26765001 RAL-884 1035 chr3R 26810557 26810584 chr3R 26811036 26811051 roo 6 473 1.5 4.5 3.0 1.5 494 chr3R 26810557 intron Tl + chr3R 26810804 intron Tl + chr3R 26811051 intron Tl + chr3R_6_26810001 chr3R_26810001 RAL-884 1036 chr3R 27019529 27019542 chr3R 27019606 27019613 4 83 10.0 11.5 10.8 0.3 84 chr3R 27019529 intron,exon RYa-R +,CG17191 - chr3R 27019571 intron,exon RYa-R +,CG17191 - chr3R 27019613 intron,exon RYa-R +,CG17191 - chr3R_4_27015001 chr3R_27015001 RAL-884 1037 chr3R 27028722 27028749 chr3R 27028800 27028828 10 77 3.0 1.0 2.0 3.3 106 chr3R 27028722 intron RYa-R + chr3R 27028775 intron RYa-R + chr3R 27028828 intron RYa-R + chr3R_10_27025001 chr3R_27025001 RAL-884 1038 chr3R 27140515 27140547 chr3R 27148124 27148157 412 17 7605 5.0 1.5 3.2 4.0 7642 chr3R 27140515 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148157 intron CG6051 - chr3R_17_27140001 chr3R_27140001 RAL-884 1039 chr3R 27342799 27342822 chr3R 27351377 27351403 Tirant 11 8580 2.5 4.5 3.5 2.4 8604 chr3R 27342799 intron CG42534 + chr3R 27347101 intron CG42534 + chr3R 27351403 intron CG42534 + chr3R_11_27345001 chr3R_27345001 RAL-884 1040 chr3R 27530562 27530584 chr3R 27530682 27530703 4 116 4.5 5.5 5.0 0.7 141 chr3R 27530562 intron CG12885 + chr3R 27530632 intron CG12885 + chr3R 27530703 intron CG12885 + chr3R_4_27530001 chr3R_27530001 RAL-884 1041 chr3R 27648599 27648870 chr3R 27648677 27648947 11 69 10.5 6.0 8.2 1.2 348 chr3R 27648599 intron tau - chr3R 27648773 intron tau - chr3R 27648947 intron tau - chr3R_11_27645001 chr3R_27645001 RAL-884 1042 chr3R 27706785 27706809 chr3R 27706851 27706885 4 70 5.0 3.5 4.2 0.8 100 chr3R 27706785 intergenic CG12428 -,CG12877 + chr3R 27706835 intergenic CG12428 -,CG12877 + chr3R 27706885 intergenic CG12428 -,CG12877 + chr3R_4_27705001 chr3R_27705001 RAL-884 1043 chr3R 27721491 27721506 chr3R 27721554 27721562 5 65 9.5 12.0 10.8 0.4 71 chr3R 27721491 intergenic not near genes chr3R 27721526 intergenic not near genes chr3R 27721562 intergenic not near genes chr3R_5_27720001 chr3R_27720001 RAL-884 1044 chr3R 27721914 27721933 chr3R 27722000 27722004 5 87 11.5 7.5 9.5 0.5 90 chr3R 27721914 intergenic not near genes chr3R 27721959 intergenic not near genes chr3R 27722004 intergenic not near genes chr3R_5_27720001 chr3R_27720001 RAL-884 1045 chr3R 27725567 27725584 chr3R 27731009 27731026 I-element 6 5442 3.5 2.0 2.8 1.6 5459 chr3R 27725567 intergenic not near genes chr3R 27728296 intergenic not near genes chr3R 27731026 intergenic not near genes chr3R_6_27725001 chr3R_27725001 RAL-884 1046 chr3R 27799939 27799963 chr3R 27800021 27800045 5 77 1.5 1.5 1.5 2.0 106 chr3R 27799939 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800045 intron CG34353 - chr3R_5_27795001 chr3R_27795001 RAL-884 1047 chr3R 27862958 27862978 chr3R 27868263 27868283 Transpac 5 5305 1.5 1.5 1.5 2.0 5325 chr3R 27862958 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868283 intron CG34353 - chr3R_5_27865001 chr3R_27865001 RAL-884 1048 chr3R 27875708 27875723 chr3R 27882754 27882778 297 8 7051 2.0 2.0 2.0 2.7 7070 chr3R 27875708 intron CG34353 - chr3R 27879243 intron CG34353 - chr3R 27882778 intron CG34353 - chr3R_8_27875001 chr3R_27875001 RAL-884 1049 chr3R 27893705 27893730 chr3R 27893812 27893839 5 109 8.5 7.0 7.8 0.6 134 chr3R 27893705 intron CG34353 - chr3R 27893772 intron CG34353 - chr3R 27893839 intron CG34353 - chr3R_5_27890001 chr3R_27890001 RAL-884 1050 chr3R 28054463 28054472 chr3R 28054520 28054548 8 73 2.0 2.0 2.0 2.7 85 chr3R 28054463 intron CG34362 + chr3R 28054506 intron CG34362 + chr3R 28054548 intron CG34362 + chr3R_8_28050001 chr3R_28050001 RAL-884 1051 chr3R 28068493 28068526 chr3R 28073935 28073961 I-element 11 5440 2.0 2.5 2.2 3.4 5468 chr3R 28068493 intron CG34362 + chr3R 28071227 intron CG34362 + chr3R 28073961 intron CG34362 + chr3R_11_28070001 chr3R_28070001 RAL-884 1052 chr3R 28152342 28152362 chr3R 28152419 28152426 4 70 5.5 4.5 5.0 0.7 84 chr3R 28152342 intron CG34354 + chr3R 28152384 intron CG34354 + chr3R 28152426 intron CG34354 + chr3R_4_28150001 chr3R_28150001 RAL-884 1053 chr3R 28223261 28223279 chr3R 28223347 28223350 4 82 7.0 8.5 7.8 0.5 89 chr3R 28223261 intron CG34354 + chr3R 28223306 intron CG34354 + chr3R 28223350 intron CG34354 + chr3R_4_28220001 chr3R_28220001 RAL-884 1054 chr3R 28253344 28253361 chr3R 28255854 28255871 jockey 5 2509 2.0 5.0 3.5 1.1 2527 chr3R 28253344 intergenic not near genes chr3R 28254608 intergenic not near genes chr3R 28255871 intergenic not near genes chr3R_5_28250001 chr3R_28250001 RAL-884 1055 chr3R 28345648 28345666 chr3R 28345724 28345729 5 67 1.0 2.5 1.8 1.8 81 chr3R 28345648 intergenic Moca-cyp + chr3R 28345688 intergenic not near genes chr3R 28345729 intergenic not near genes chr3R_5_28345001 chr3R_28345001 RAL-884 1056 chr3R 28390117 28390138 chr3R 28390193 28390216 4 76 13.5 15.0 14.2 0.3 99 chr3R 28390117 intergenic not near genes chr3R 28390166 intergenic not near genes chr3R 28390216 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-884 1057 chr3R 28393713 28393731 chr3R 28393813 28393831 4 100 1.0 2.0 1.5 1.6 118 chr3R 28393713 intergenic not near genes chr3R 28393772 intergenic not near genes chr3R 28393831 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-884 1058 chr3R 28407722 28407736 chr3R 28407790 28407821 4 79 7.5 8.5 8.0 0.4 99 chr3R 28407722 intergenic not near genes chr3R 28407772 intergenic not near genes chr3R 28407821 intergenic not near genes chr3R_4_28405001 chr3R_28405001 RAL-884 1059 chr3R 28478495 28478523 chr3R 28478571 28478594 4 75 5.0 6.5 5.8 0.6 99 chr3R 28478495 intergenic not near genes chr3R 28478544 intergenic not near genes chr3R 28478594 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-884 1060 chr3R 28479016 28479167 chr3R 28479090 28479249 5 85 0.5 3.5 2.0 1.7 233 chr3R 28479016 intergenic not near genes chr3R 28479132 intergenic not near genes chr3R 28479249 intergenic not near genes chr3R_5_28475001 chr3R_28475001 RAL-884 1061 chr3R 28546964 28546985 chr3R 28547070 28547088 4 102 8.0 7.5 7.8 0.5 124 chr3R 28546964 intergenic not near genes chr3R 28547026 intergenic not near genes chr3R 28547088 intergenic not near genes chr3R_4_28545001 chr3R_28545001 RAL-884 1062 chr3R 28758284 28758310 chr3R 28763901 28763901 roo 4 5610 1.5 0.5 1.0 2.0 5617 chr3R 28758284 intergenic aqrs - chr3R 28761092 intergenic not near genes chr3R 28763901 intergenic not near genes chr3R_4_28760001 chr3R_28760001 RAL-884 1063 chr3R 21907534 21907536 chr3R 28831801 28831802 81 6924266 25.0 18.0 21.5 3.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_81_25365001 chr3R_25365001 RAL-884 1064 chr3R 21907534 21907536 chr3R 29013340 29013340 6 7105805 25.0 12.0 18.5 0.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_6_25460001 chr3R_25460001 RAL-884 1065 chr3R 29237247 29237284 chr3R 29239267 29239270 6 2015 12.5 2.0 7.2 0.7 2023 chr3R 29237247 exon CG11951 - chr3R 29238258 intron CG11951 - chr3R 29239270 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-884 1066 chr3R 29256272 29256295 chr3R 29256352 29256370 6 79 7.5 8.0 7.8 0.7 98 chr3R 29256272 intergenic CG45544 +,stg - chr3R 29256321 intergenic CG45544 + chr3R 29256370 intergenic CG45544 + chr3R_6_29255001 chr3R_29255001 RAL-884 1067 chr3R 29406616 29406646 chr3R 29407902 29407912 jockey 8 1274 2.5 2.5 2.5 2.3 1296 chr3R 29406616 intron Ptp99A + chr3R 29407264 intron Ptp99A + chr3R 29407912 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-884 1068 chr3R 29538058 29538179 chr3R 29538134 29538259 4 74 7.0 7.5 7.2 0.5 201 chr3R 29538058 intergenic not near genes chr3R 29538158 intergenic not near genes chr3R 29538259 intergenic not near genes chr3R_4_29535001 chr3R_29535001 RAL-884 1069 chr3R 29590391 29590398 chr3R 29590484 29590491 4 93 9.0 10.0 9.5 0.4 100 chr3R 29590391 intron CG31041 - chr3R 29590441 intron CG31041 - chr3R 29590491 intron CG31041 - chr3R_4_29590001 chr3R_29590001 RAL-884 1070 chr3R 29590399 29590402 chr3R 29590476 29590495 4 86 8.5 9.0 8.8 0.4 96 chr3R 29590399 intron CG31041 - chr3R 29590447 intron CG31041 - chr3R 29590495 intron CG31041 - chr3R_4_29590001 chr3R_29590001 RAL-884 1071 chr3R 29773899 29773907 chr3R 29773970 29773998 5 87 3.0 0.0 1.5 2.0 99 chr3R 29773899 intron kay + chr3R 29773948 intron kay + chr3R 29773998 intron kay + chr3R_5_29770001 chr3R_29770001 RAL-884 1072 chr3R 29854827 29854860 chr3R 29854906 29854938 5 78 5.5 7.0 6.2 0.7 111 chr3R 29854827 3` UTR dgt1 - chr3R 29854882 exon dgt1 - chr3R 29854938 exon dgt1 - chr3R_5_29850001 chr3R_29850001 RAL-884 1073 chr3R 29968776 29968782 chr3R 29968960 29968966 4 184 11.0 7.5 9.2 0.4 190 chr3R 29968776 intron TkR99D - chr3R 29968871 intron TkR99D - chr3R 29968966 intron TkR99D - chr3R_4_29965001 chr3R_29965001 RAL-884 1074 chr3R 30032162 30032180 chr3R 30032239 30032259 4 78 1.0 1.5 1.2 1.8 97 chr3R 30032162 intron Axn + chr3R 30032210 intron Axn + chr3R 30032259 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-884 1075 chr3R 30084850 30084885 chr3R 30086316 30086352 hobo 18 1463 0.5 4.0 2.2 5.6 1502 chr3R 30084850 intron sima + chr3R 30085601 intron sima + chr3R 30086352 intron sima + chr3R_18_30085001 chr3R_30085001 RAL-884 1076 chr3R 30124961 30124980 chr3R 30125036 30125056 5 73 2.0 2.5 2.2 1.6 95 chr3R 30124961 intergenic CG45073 - chr3R 30125008 intergenic CG45073 - chr3R 30125056 intergenic CG45073 - chr3R_5_30125001 chr3R_30125001 RAL-884 1077 chr3R 30267998 30268263 chr3R 30268084 30268342 5 80 3.5 10.5 7.0 0.6 344 chr3R 30267998 intergenic not near genes chr3R 30268170 intergenic not near genes chr3R 30268342 intergenic not near genes chr3R_5_30265001 chr3R_30265001 RAL-884 1078 chr3R 30307122 30307151 chr3R 30307200 30307232 5 76 5.5 6.0 5.8 0.7 110 chr3R 30307122 intron hdc + chr3R 30307177 intron hdc + chr3R 30307232 intron hdc + chr3R_5_30305001 chr3R_30305001 RAL-884 1079 chr3R 30480475 30480513 chr3R 30482943 30482981 jockey 9 2464 2.0 5.5 3.8 1.9 2506 chr3R 30480475 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482981 intron PH4alphaEFB + chr3R_9_30480001 chr3R_30480001 RAL-884 1080 chr3R 30485040 30485068 chr3R 30485116 30485144 7 73 1.0 0.5 0.8 3.9 104 chr3R 30485040 intron PH4alphaEFB + chr3R 30485092 intron PH4alphaEFB + chr3R 30485144 intron PH4alphaEFB + chr3R_7_30485001 chr3R_30485001 RAL-884 1081 chr3R 30549016 30549039 chr3R 30549108 30549131 5 90 5.0 8.0 6.5 0.7 115 chr3R 30549016 intron tmod + chr3R 30549074 intron tmod + chr3R 30549131 intron tmod + chr3R_5_30545001 chr3R_30545001 RAL-884 1082 chr3R 30627630 30627639 chr3R 30627686 30627719 5 67 2.5 4.5 3.5 1.1 89 chr3R 30627630 exon CG2267 - chr3R 30627674 exon CG2267 - chr3R 30627719 exon CG2267 - chr3R_5_30625001 chr3R_30625001 RAL-884 1083 chr3R 30679517 30679552 chr3R 30686986 30687021 blood 9 7469 3.5 2.5 3.0 2.2 7504 chr3R 30679517 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_9_30680001 chr3R_30680001 RAL-884 1084 chr3R 30818827 30818842 chr3R 30820376 30820407 1360 4 1557 5.0 2.0 3.5 0.9 1580 chr3R 30818827 intron cindr + chr3R 30819617 intron cindr + chr3R 30820407 intron cindr + chr3R_4_30815001 chr3R_30815001 RAL-884 1085 chr3R 30850256 30850266 chr3R 30850347 30850358 4 91 6.5 5.5 6.0 0.6 102 chr3R 30850256 intergenic not near genes chr3R 30850307 intergenic not near genes chr3R 30850358 intergenic not near genes chr3R_4_30850001 chr3R_30850001 RAL-884 1086 chr3R 30900527 30900540 chr3R 30900607 30900608 5 76 10.0 6.0 8.0 0.6 81 chr3R 30900527 3` UTR Cyp4c3 + chr3R 30900568 3` UTR Cyp4c3 + chr3R 30900608 3` UTR Cyp4c3 + chr3R_5_30900001 chr3R_30900001 RAL-884 1087 chr3R 30900541 30900548 chr3R 30900601 30900617 4 72 7.0 6.0 6.5 0.5 76 chr3R 30900541 3` UTR Cyp4c3 + chr3R 30900579 3` UTR Cyp4c3 + chr3R 30900617 3` UTR Cyp4c3 + chr3R_4_30900001 chr3R_30900001 RAL-884 1088 chr3R 30921221 30921252 chr3R 30921300 30921331 8 78 9.0 5.0 7.0 1.0 110 chr3R 30921221 intron Ptx1 + chr3R 30921276 intron Ptx1 + chr3R 30921331 intron Ptx1 + chr3R_8_30920001 chr3R_30920001 RAL-884 1089 chr3R 31042114 31042144 chr3R 31042201 31042230 11 86 3.0 2.5 2.8 2.9 116 chr3R 31042114 intron CanA1 + chr3R 31042172 intron CanA1 + chr3R 31042230 intron CanA1 + chr3R_11_31040001 chr3R_31040001 RAL-884 1090 chr3R 31278156 31278182 chr3R 31278233 31278256 6 77 3.5 6.0 4.8 1.0 100 chr3R 31278156 intergenic not near genes chr3R 31278206 intergenic not near genes chr3R 31278256 intergenic not near genes chr3R_6_31275001 chr3R_31275001 RAL-884 1091 chr3R 31279372 31279408 chr3R 31285563 31285564 diver 8 6186 3.0 2.0 2.5 2.3 6192 chr3R 31279372 intergenic not near genes chr3R 31282468 intergenic not near genes chr3R 31285564 intergenic not near genes chr3R_8_31280001 chr3R_31280001 RAL-884 1092 chr3R 31413101 31413123 chr3R 31418288 31418319 copia 6 5194 3.0 3.0 3.0 1.5 5218 chr3R 31413101 intron Gprk2 + chr3R 31415710 intron Gprk2 + chr3R 31418319 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 RAL-884 1093 chr3R 31435361 31435391 chr3R 31435513 31435541 8 151 0.5 3.5 2.0 2.7 180 chr3R 31435361 intron Gprk2 + chr3R 31435451 intron Gprk2 + chr3R 31435541 intron Gprk2 + chr3R_8_31435001 chr3R_31435001 RAL-884 1094 chr3R 31442279 31442296 chr3R 31442364 31442381 5 85 3.5 6.0 4.8 0.9 102 chr3R 31442279 intron Gprk2 + chr3R 31442330 intron Gprk2 + chr3R 31442381 intron Gprk2 + chr3R_5_31440001 chr3R_31440001 RAL-884 1095 chr3R 31539348 31539356 chr3R 31539433 31539441 4 84 1.0 5.0 3.0 1.0 93 chr3R 31539348 intergenic not near genes chr3R 31539394 intergenic not near genes chr3R 31539441 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-884 1096 chr3R 31539868 31539885 chr3R 31539952 31539970 8 84 3.0 4.5 3.8 1.7 102 chr3R 31539868 intergenic not near genes chr3R 31539919 intergenic not near genes chr3R 31539970 intergenic not near genes chr3R_8_31535001 chr3R_31535001 RAL-884 1097 chr3R 31691533 31691563 chr3R 31696297 31696328 Doc 11 4761 3.0 7.0 5.0 1.8 4795 chr3R 31691533 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696328 intergenic not near genes chr3R_11_31690001 chr3R_31690001 RAL-884 1098 chr3R 31699721 31699752 chr3R 31699802 31699827 4 76 1.0 4.0 2.5 1.1 106 chr3R 31699721 intergenic not near genes chr3R 31699774 intergenic not near genes chr3R 31699827 intergenic not near genes chr3R_4_31695001 chr3R_31695001 RAL-884 1099 chr3R 31808807 31808831 chr3R 31808926 31808931 4 114 1.5 0.5 1.0 2.0 124 chr3R 31808807 intron CG11576 - chr3R 31808869 intron CG11576 - chr3R 31808931 intron CG11576 - chr3R_4_31805001 chr3R_31805001 RAL-884 1100 chr3R 31829390 31829409 chr3R 31829466 31829478 5 74 5.0 4.5 4.8 0.9 88 chr3R 31829390 intron RhoGAP100F + chr3R 31829434 intron RhoGAP100F + chr3R 31829478 intron RhoGAP100F + chr3R_5_31825001 chr3R_31825001 RAL-884 1101 chr3R 31829410 31829415 chr3R 31829455 31829487 4 66 3.5 3.0 3.2 1.0 77 chr3R 31829410 intron RhoGAP100F + chr3R 31829448 intron RhoGAP100F + chr3R 31829487 intron RhoGAP100F + chr3R_4_31825001 chr3R_31825001 RAL-884 1102 chr3R 31858767 31858783 chr3R 31858829 31858868 4 74 3.0 1.5 2.2 1.2 101 chr3R 31858767 intron heph - chr3R 31858818 intron heph - chr3R 31858868 intron heph - chr3R_4_31855001 chr3R_31855001 RAL-884 1103 chr3R 31874857 31874879 chr3R 31874922 31874955 8 66 3.0 3.0 3.0 2.0 98 chr3R 31874857 intron heph - chr3R 31874906 intron heph - chr3R 31874955 intron heph - chr3R_8_31870001 chr3R_31870001 RAL-884 1104 chr3R 31885673 31885706 chr3R 31885750 31885783 10 77 3.5 3.0 3.2 2.4 110 chr3R 31885673 intron heph - chr3R 31885728 intron heph - chr3R 31885783 intron heph - chr3R_10_31885001 chr3R_31885001 RAL-884 1105 chr3R 31998003 31998019 chr3R 32005464 32005489 blood 5 7468 2.0 3.5 2.8 1.3 7486 chr3R 31998003 intron heph - chr3R 32001746 intron heph - chr3R 32005489 intron heph - chr3R_5_32000001 chr3R_32000001 RAL-884 1106 chr4 671607 671637 chr4 680186 680212 Tirant 7 8579 3.5 5.5 4.5 1.3 8605 chr4 671607 intron CG11360 + chr4 675910 intron CG11360 + chr4 680212 intron CG11360 + chr4_7_675001 chr4_675001 RAL-884 1107 chrX 201048 201069 chrX 201121 201147 5 75 0.5 3.5 2.0 1.7 99 chrX 201048 intergenic not near genes chrX 201098 intergenic not near genes chrX 201147 intergenic not near genes chrX_5_200001 chrX_200001 RAL-884 1108 chrX 367038 367070 chrX 367135 367167 4 92 1.0 1.0 1.0 2.0 129 chrX 367038 intron,5` UTR CG32816 -,yar + chrX 367102 intron CG32816 - chrX 367167 intron CG32816 - chrX_4_365001 chrX_365001 RAL-884 1109 chrX 617983 617999 chrX 618063 618079 6 80 2.0 4.0 3.0 1.5 96 chrX 617983 intron CG13366 - chrX 618031 intron CG13366 - chrX 618079 intron CG13366 - chrX_6_615001 chrX_615001 RAL-884 1110 chrX 670264 670290 chrX 670344 670369 5 80 0.0 1.0 0.5 3.3 105 chrX 670264 intergenic not near genes chrX 670316 intergenic not near genes chrX 670369 intergenic not near genes chrX_5_670001 chrX_670001 RAL-884 1111 chrX 680840 680868 chrX 680923 680949 6 76 3.5 3.5 3.5 1.3 109 chrX 680840 intergenic not near genes chrX 680894 intergenic not near genes chrX 680949 intergenic not near genes chrX_6_680001 chrX_680001 RAL-884 1112 chrX 706812 706824 chrX 707162 707188 7 357 0.5 2.5 1.5 2.8 376 chrX 706812 intron sdk + chrX 707000 intron sdk + chrX 707188 intron sdk + chrX_7_705001 chrX_705001 RAL-884 1113 chrX 718333 718359 chrX 718413 718439 5 80 3.0 1.5 2.2 1.6 106 chrX 718333 intron sdk + chrX 718386 intron sdk + chrX 718439 intron sdk + chrX_5_715001 chrX_715001 RAL-884 1114 chrX 806784 806812 chrX 806878 806908 7 90 3.0 2.0 2.5 2.0 124 chrX 806784 intron Sec22 + chrX 806846 intron Sec22 + chrX 806908 intron Sec22 + chrX_7_805001 chrX_805001 RAL-884 1115 chrX 826391 826410 chrX 826552 826571 6 160 1.5 2.5 2.0 2.0 180 chrX 826391 intron CG43867 - chrX 826481 intron CG43867 - chrX 826571 intron CG43867 - chrX_6_825001 chrX_825001 RAL-884 1116 chrX 827604 827630 chrX 835396 835413 roo 6 7790 1.5 0.0 0.8 3.3 7809 chrX 827604 intron CG43867 - chrX 831508 intron CG43867 - chrX 835413 intron CG43867 - chrX_6_830001 chrX_830001 RAL-884 1117 chrX 906705 906727 chrX 908493 908516 S-element 5 1783 3.5 6.0 4.8 0.9 1811 chrX 906705 intron CG43867 - chrX 907610 intron CG43867 - chrX 908516 intron CG43867 - chrX_5_905001 chrX_905001 RAL-884 1118 chrX 1253737 1253755 chrX 1253819 1253837 6 80 5.5 4.0 4.8 1.0 100 chrX 1253737 intron Atf3 - chrX 1253787 intron Atf3 - chrX 1253837 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-884 1119 chrX 1357777 1357803 chrX 1367947 1367964 Doc 5 10168 2.0 0.5 1.2 2.3 10187 chrX 1357777 intergenic png - chrX 1362870 intergenic not near genes chrX 1367964 intergenic not near genes chrX_5_1360001 chrX_1360001 RAL-884 1120 chrX 1518034 1518074 chrX 1523435 1523476 jockey 4 5399 2.5 2.5 2.5 1.1 5442 chrX 1518034 intergenic inc + chrX 1520755 intergenic not near genes chrX 1523476 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-884 1121 chrX 2095943 2095952 chrX 2096019 2096024 4 74 5.0 1.0 3.0 1.0 81 chrX 2095943 intron csw + chrX 2095984 intron csw + chrX 2096024 intron csw + chrX_4_2095001 chrX_2095001 RAL-884 1122 chrX 2146656 2146686 chrX 2146746 2146779 5 90 0.5 3.0 1.8 1.8 123 chrX 2146656 intron Pgd + chrX 2146718 intron Pgd + chrX 2146779 intron Pgd + chrX_5_2145001 chrX_2145001 RAL-884 1123 chrX 2578812 2578844 chrX 2578903 2578936 8 88 4.0 2.5 3.2 1.9 124 chrX 2578812 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578936 intergenic Vha36-3 -,Pdfr + chrX_8_2575001 chrX_2575001 RAL-884 1124 chrX 2610385 2610390 chrX 2617502 2617507 HMS-Beagle 4 7117 4.0 1.5 2.8 1.1 7122 chrX 2610385 intergenic CG8636 - chrX 2613946 intergenic not near genes chrX 2617507 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-884 1125 chrX 2664391 2664420 chrX 2665537 2665565 1360 6 1143 0.5 2.5 1.5 2.4 1174 chrX 2664391 intron sgg + chrX 2664978 intron sgg + chrX 2665565 intron sgg + chrX_6_2660001 chrX_2660001 RAL-884 1126 chrX 2684346 2684379 chrX 2684490 2684522 9 142 0.5 1.5 1.0 4.5 176 chrX 2684346 intergenic not near genes chrX 2684434 intergenic not near genes chrX 2684522 intergenic not near genes chrX_9_2680001 chrX_2680001 RAL-884 1127 chrX 2844908 2844927 chrX 2852318 2852333 mdg1 4 7408 1.5 2.5 2.0 1.3 7425 chrX 2844908 intron kirre + chrX 2848620 intron kirre + chrX 2852333 intron kirre + chrX_4_2845001 chrX_2845001 RAL-884 1128 chrX 2888117 2888147 chrX 2888194 2888207 7 74 1.5 2.5 2.0 2.3 90 chrX 2888117 intron kirre + chrX 2888162 intron kirre + chrX 2888207 intron kirre + chrX_7_2885001 chrX_2885001 RAL-884 1129 chrX 3038740 3038758 chrX 3038826 3038846 6 83 1.5 2.5 2.0 2.0 106 chrX 3038740 intron kirre + chrX 3038793 intron kirre + chrX 3038846 intron kirre + chrX_6_3035001 chrX_3035001 RAL-884 1130 chrX 3408989 3409018 chrX 3409063 3409091 5 76 2.0 2.0 2.0 1.7 102 chrX 3408989 intron,intron CR44999 +,CG12535 - chrX 3409040 intron,intron CR44999 +,CG12535 - chrX 3409091 intron,intron CR44999 +,CG12535 - chrX_5_3405001 chrX_3405001 RAL-884 1131 chrX 3415017 3415047 chrX 3421202 3421210 3S18 10 6181 0.5 1.0 0.8 5.6 6193 chrX 3415017 intron,intron CR44999 +,CG12535 - chrX 3418114 intron,intron CR44999 +,CG12535 - chrX 3421210 intron,intron CR44999 +,CG12535 - chrX_10_3415001 chrX_3415001 RAL-884 1132 chrX 3493105 3493119 chrX 3502260 3502277 roo 4 9153 3.0 2.0 2.5 1.1 9172 chrX 3493105 intron,intron CR44999 +,Gas8 - chrX 3497691 intron,intron CR44999 +,Gas8 - chrX 3502277 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-884 1133 chrX 3513757 3513785 chrX 3513840 3513868 8 83 4.0 0.5 2.2 2.5 111 chrX 3513757 intron,intron CR44999 +,CG32791 - chrX 3513812 intron,intron CR44999 +,CG32791 - chrX 3513868 intron,intron CR44999 +,CG32791 - chrX_8_3510001 chrX_3510001 RAL-884 1134 chrX 3597549 3597580 chrX 3619717 3619748 roo 7 22165 1.5 2.0 1.8 2.5 22199 chrX 3597549 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619748 intron AstA-R1 + chrX_7_3605001 chrX_3605001 RAL-884 1135 chrX 3620467 3620495 chrX 3620559 3620586 5 90 1.5 1.5 1.5 2.0 119 chrX 3620467 intron AstA-R1 + chrX 3620526 intron AstA-R1 + chrX 3620586 intron AstA-R1 + chrX_5_3620001 chrX_3620001 RAL-884 1136 chrX 3630543 3630572 chrX 3630619 3630625 6 70 2.0 1.5 1.8 2.1 82 chrX 3630543 intron AstA-R1 + chrX 3630584 intron AstA-R1 + chrX 3630625 intron AstA-R1 + chrX_6_3630001 chrX_3630001 RAL-884 1137 chrX 3657421 3657436 chrX 3657500 3657516 4 80 3.0 4.0 3.5 0.9 95 chrX 3657421 intron AstA-R1 + chrX 3657468 intron AstA-R1 + chrX 3657516 intron AstA-R1 + chrX_4_3655001 chrX_3655001 RAL-884 1138 chrX 3881272 3881305 chrX 3881411 3881444 5 139 1.0 2.0 1.5 2.0 172 chrX 3881272 intron VhaAC39-1 + chrX 3881358 intron VhaAC39-1 + chrX 3881444 intron VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-884 1139 chrX 4157898 4157918 chrX 4164936 4164955 297 4 7039 2.5 2.0 2.2 1.2 7057 chrX 4157898 intron Fas2 - chrX 4161426 intron Fas2 - chrX 4164955 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-884 1140 chrX 4415311 4415336 chrX 4415387 4415412 7 75 1.5 1.5 1.5 2.8 101 chrX 4415311 intron,intron CR32773 -,bi + chrX 4415362 intron,intron CR32773 -,bi + chrX 4415412 intron,intron CR32773 -,bi + chrX_7_4415001 chrX_4415001 RAL-884 1141 chrX 4731813 4731835 chrX 4736906 4736919 jockey 6 5087 5.5 3.0 4.2 1.2 5106 chrX 4731813 intergenic not near genes chrX 4734366 intergenic not near genes chrX 4736919 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-884 1142 chrX 4827976 4827998 chrX 4835347 4835363 Stalker4 6 7369 3.5 3.5 3.5 1.3 7387 chrX 4827976 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835363 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-884 1143 chrX 5206310 5206324 chrX 5206581 5206597 5 271 1.0 4.0 2.5 1.4 287 chrX 5206310 intron,intron CG15465 +,rg + chrX 5206454 intron,intron CG15465 +,rg + chrX 5206597 intron,intron CG15465 +,rg + chrX_5_5205001 chrX_5205001 RAL-884 1144 chrX 5345402 5345427 chrX 5345513 5345538 5 110 0.5 4.5 2.5 1.4 136 chrX 5345402 intron SK + chrX 5345470 intron SK + chrX 5345538 intron SK + chrX_5_5345001 chrX_5345001 RAL-884 1145 chrX 5798870 5798883 chrX 5799032 5799043 4 159 0.0 6.5 3.2 1.0 173 chrX 5798870 intergenic not near genes chrX 5798956 intergenic not near genes chrX 5799043 intergenic not near genes chrX_4_5795001 chrX_5795001 RAL-884 1146 chrX 5884169 5884186 chrX 5884410 5884425 pogo 7 239 2.0 2.0 2.0 2.3 256 chrX 5884169 intron CR45668 - chrX 5884297 intron CR45668 - chrX 5884425 intron CR45668 - chrX_7_5880001 chrX_5880001 RAL-884 1147 chrX 6118713 6118733 chrX 6118781 6118804 11 74 0.5 3.5 2.0 3.7 91 chrX 6118713 intron Ca-alpha1T - chrX 6118758 intron Ca-alpha1T - chrX 6118804 intron Ca-alpha1T - chrX_11_6115001 chrX_6115001 RAL-884 1148 chrX 6179582 6179612 chrX 6179661 6179686 6 76 1.5 2.0 1.8 2.1 104 chrX 6179582 intron Ca-alpha1T - chrX 6179634 intron Ca-alpha1T - chrX 6179686 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-884 1149 chrX 6335226 6335242 chrX 6337726 6337731 Tirant 6 2504 0.0 5.5 2.8 1.6 2505 chrX 6335226 intergenic not near genes chrX 6336478 intergenic not near genes chrX 6337731 intergenic CG3842 + chrX_6_6335001 chrX_6335001 RAL-884 1150 chrX 6605477 6605509 chrX 6608499 6608531 Burdock 5 3017 0.5 2.5 1.5 2.0 3054 chrX 6605477 intron pigs + chrX 6607004 intron pigs + chrX 6608531 intron pigs + chrX_5_6605001 chrX_6605001 RAL-884 1151 chrX 6681158 6681304 chrX 6683112 6683269 4 1958 10.0 10.5 10.2 0.4 2111 chrX 6681158 exon l(1)G0255 + chrX 6682214 intron CG4095 + chrX 6683269 exon CG4095 + chrX_4_6680001 chrX_6680001 RAL-884 1152 chrX 6687897 6687920 chrX 6688046 6688067 4 144 8.5 14.5 11.5 0.3 170 chrX 6687897 exon CG3184 - chrX 6687982 exon CG3184 - chrX 6688067 exon CG3184 - chrX_4_6685001 chrX_6685001 RAL-884 1153 chrX 6686913 6686947 chrX 6689546 6689580 5 2637 15.0 22.0 18.5 0.3 2667 chrX 6686913 3` UTR Pink1 + chrX 6688246 exon CG3184 - chrX 6689580 3` UTR CG14442 - chrX_5_6685001 chrX_6685001 RAL-884 1154 chrX 6897567 6897704 chrX 6897645 6897795 10 91 2.0 2.5 2.2 3.1 228 chrX 6897567 intergenic not near genes chrX 6897681 intergenic not near genes chrX 6897795 intergenic not near genes chrX_10_6895001 chrX_6895001 RAL-884 1155 chrX 6976487 6976524 chrX 6976583 6976620 8 95 2.5 4.0 3.2 1.9 133 chrX 6976487 intron ogre - chrX 6976554 intron ogre - chrX 6976620 intron ogre - chrX_8_6975001 chrX_6975001 RAL-884 1156 chrX 7125250 7125271 chrX 7134408 7134430 roo 4 9158 1.0 2.5 1.8 1.4 9180 chrX 7125250 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134430 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-884 1157 chrX 7274808 7274830 chrX 7275012 7275034 8 203 1.0 2.0 1.5 3.2 226 chrX 7274808 intron CR44357 - chrX 7274921 intron CR44357 - chrX 7275034 intron CR44357 - chrX_8_7270001 chrX_7270001 RAL-884 1158 chrX 7702915 7702940 chrX 7703335 7703356 jockey 4 428 0.5 3.0 1.8 1.4 441 chrX 7702915 intron CHES-1-like - chrX 7703136 intron CHES-1-like - chrX 7703356 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-884 1159 chrX 7845735 7845758 chrX 7847215 7847246 hopper2 5 1483 2.5 1.5 2.0 1.7 1511 chrX 7845735 intergenic not near genes chrX 7846490 intergenic not near genes chrX 7847246 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-884 1160 chrX 8092289 8092322 chrX 8092374 8092394 4 82 1.5 1.0 1.2 1.8 105 chrX 8092289 intron Ubc-E2H - chrX 8092342 intron Ubc-E2H - chrX 8092394 intron Ubc-E2H - chrX_4_8090001 chrX_8090001 RAL-884 1161 chrX 8536761 8536778 chrX 8536835 8536854 5 73 3.5 4.0 3.8 1.0 93 chrX 8536761 intron Nrg + chrX 8536808 intron Nrg + chrX 8536854 intron Nrg + chrX_5_8535001 chrX_8535001 RAL-884 1162 chrX 8585394 8585427 chrX 8585518 8585555 9 125 2.0 3.0 2.5 2.6 161 chrX 8585394 intron CG12065 + chrX 8585474 intron CG12065 + chrX 8585555 intron CG12065 + chrX_9_8585001 chrX_8585001 RAL-884 1163 chrX 8605311 8605335 chrX 8605388 8605412 4 72 3.5 3.5 3.5 0.9 101 chrX 8605311 exon Caf1-180 - chrX 8605362 exon Caf1-180 - chrX 8605412 exon Caf1-180 - chrX_4_8605001 chrX_8605001 RAL-884 1164 chrX 8885673 8885698 chrX 8885773 8885798 4 100 2.5 1.0 1.8 1.4 125 chrX 8885673 intron Moe - chrX 8885736 intron Moe - chrX 8885798 intron Moe - chrX_4_8885001 chrX_8885001 RAL-884 1165 chrX 8922334 8922350 chrX 8922768 8922775 jockey 5 432 3.0 1.0 2.0 1.7 441 chrX 8922334 intron rdgA + chrX 8922554 intron rdgA + chrX 8922775 intron rdgA + chrX_5_8920001 chrX_8920001 RAL-884 1166 chrX 8922355 8922361 chrX 8922758 8922795 jockey 7 426 2.0 1.0 1.5 2.8 440 chrX 8922355 intron rdgA + chrX 8922575 intron rdgA + chrX 8922795 intron rdgA + chrX_7_8920001 chrX_8920001 RAL-884 1167 chrX 8948764 8948789 chrX 8956266 8956292 roo 4 7506 1.0 0.5 0.8 2.2 7528 chrX 8948764 intron rdgA + chrX 8952528 intron rdgA + chrX 8956292 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-884 1168 chrX 9062746 9062756 chrX 9062817 9062834 4 76 1.0 0.5 0.8 2.2 88 chrX 9062746 intron CG15365 - chrX 9062790 intron CG15365 - chrX 9062834 intron CG15365 - chrX_4_9060001 chrX_9060001 RAL-884 1169 chrX 9575799 9575818 chrX 9576122 9576142 mdg3 4 322 4.5 3.5 4.0 0.8 343 chrX 9575799 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576142 intron,5` UTR CG32699 -,CG42395 - chrX_4_9575001 chrX_9575001 RAL-884 1170 chrX 9668722 9668747 chrX 9668800 9668823 4 78 2.0 3.0 2.5 1.1 101 chrX 9668722 3` UTR nej - chrX 9668772 3` UTR nej - chrX 9668823 3` UTR nej - chrX_4_9665001 chrX_9665001 RAL-884 1171 chrX 9791864 9791891 chrX 9791961 9791966 9 92 1.0 3.5 2.2 2.8 102 chrX 9791864 intron CG32698 + chrX 9791915 intron CG32698 + chrX 9791966 intron CG32698 + chrX_9_9790001 chrX_9790001 RAL-884 1172 chrX 10154284 10154304 chrX 10154360 10154380 6 76 3.0 0.5 1.8 2.1 96 chrX 10154284 intron,intron CR44894 -,CG12645 + chrX 10154332 intron,intron CR44894 -,CG12645 + chrX 10154380 intron,intron CR44894 -,CG12645 + chrX_6_10150001 chrX_10150001 RAL-884 1173 chrX 10550334 10550364 chrX 10550410 10550442 8 74 3.0 0.5 1.8 2.9 108 chrX 10550334 intron spri - chrX 10550388 intron spri - chrX 10550442 intron spri - chrX_8_10550001 chrX_10550001 RAL-884 1174 chrX 10550861 10550881 chrX 10552328 10552332 hobo 5 1463 4.0 3.5 3.8 1.0 1471 chrX 10550861 intron spri - chrX 10551596 intron spri - chrX 10552332 intron spri - chrX_5_10550001 chrX_10550001 RAL-884 1175 chrX 11268575 11268587 chrX 11270054 11270070 hopper2 4 1486 2.5 0.0 1.2 1.8 1495 chrX 11268575 intron CG44422 - chrX 11269322 intron CG44422 - chrX 11270070 intron CG44422 - chrX_4_11265001 chrX_11265001 RAL-884 1176 chrX 11464801 11464829 chrX 11464879 11464908 4 78 1.5 1.5 1.5 1.6 107 chrX 11464801 intron CG43155 + chrX 11464854 intron CG43155 + chrX 11464908 intron CG43155 + chrX_4_11460001 chrX_11460001 RAL-884 1177 chrX 11499108 11499141 chrX 11499185 11499189 4 69 3.5 2.5 3.0 1.0 81 chrX 11499108 intron Drak + chrX 11499148 intron Drak + chrX 11499189 intron Drak + chrX_4_11495001 chrX_11495001 RAL-884 1178 chrX 11633419 11633426 chrX 11640473 11640480 297 4 7054 4.5 2.5 3.5 0.9 7061 chrX 11633419 intron Ptp10D + chrX 11636950 intron Ptp10D + chrX 11640480 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-884 1179 chrX 11719869 11719894 chrX 11719949 11719973 5 79 1.0 0.5 0.8 2.8 104 chrX 11719869 3` UTR prtp + chrX 11719921 intergenic prtp +,Tango10 + chrX 11719973 intergenic prtp +,Tango10 + chrX_5_11715001 chrX_11715001 RAL-884 1180 chrX 12038087 12038118 chrX 12038281 12038311 7 190 1.5 2.0 1.8 2.5 224 chrX 12038087 intergenic not near genes chrX 12038199 intergenic not near genes chrX 12038311 intergenic not near genes chrX_7_12035001 chrX_12035001 RAL-884 1181 chrX 12094044 12094058 chrX 12094128 12094147 4 85 2.0 1.5 1.8 1.4 103 chrX 12094044 intron,intron CR43960 +,Ten-a + chrX 12094096 intron,intron CR43960 +,Ten-a + chrX 12094147 intron,intron CR43960 +,Ten-a + chrX_4_12090001 chrX_12090001 RAL-884 1182 chrX 12250602 12250612 chrX 12250680 12250690 4 78 2.5 0.5 1.5 1.6 88 chrX 12250602 intron Ten-a + chrX 12250646 intron Ten-a + chrX 12250690 intron Ten-a + chrX_4_12250001 chrX_12250001 RAL-884 1183 chrX 12350780 12350805 chrX 12350861 12350869 4 76 3.5 0.5 2.0 1.3 89 chrX 12350780 intergenic not near genes chrX 12350824 intergenic not near genes chrX 12350869 intergenic not near genes chrX_4_12350001 chrX_12350001 RAL-884 1184 chrX 12670637 12670665 chrX 12670718 12670720 8 77 1.0 4.5 2.8 2.1 83 chrX 12670637 intron Tis11 + chrX 12670678 intron Tis11 + chrX 12670720 intron Tis11 + chrX_8_12670001 chrX_12670001 RAL-884 1185 chrX 12752285 12752303 chrX 12752372 12752389 6 86 2.0 1.0 1.5 2.4 104 chrX 12752285 5` UTR CR44619 + chrX 12752337 5` UTR CR44619 + chrX 12752389 5` UTR CR44619 + chrX_6_12750001 chrX_12750001 RAL-884 1186 chrX 12971707 12971721 chrX 12971766 12971777 4 59 1.5 1.0 1.2 1.8 70 chrX 12971707 intron,exon CR43636 -,CG15721 + chrX 12971742 intron,exon CR43636 -,CG15721 + chrX 12971777 intron,exon CR43636 -,CG15721 + chrX_4_12970001 chrX_12970001 RAL-884 1187 chrX 13161703 13161725 chrX 13161780 13161802 4 77 1.5 0.5 1.0 2.0 99 chrX 13161703 3` UTR CG12096 + chrX 13161752 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161802 3` UTR,3` UTR CG12096 +,CG34411 - chrX_4_13160001 chrX_13160001 RAL-884 1188 chrX 13374845 13374855 chrX 13374918 13374935 4 77 5.5 1.5 3.5 0.9 90 chrX 13374845 intron CG1640 + chrX 13374890 intron CG1640 + chrX 13374935 intron CG1640 + chrX_4_13370001 chrX_13370001 RAL-884 1189 chrX 13429468 13429495 chrX 13430616 13430620 jockey 4 1142 1.0 3.5 2.2 1.2 1152 chrX 13429468 intergenic not near genes chrX 13430044 intergenic not near genes chrX 13430620 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-884 1190 chrX 13843368 13843403 chrX 13843445 13843474 4 62 2.0 1.0 1.5 1.6 106 chrX 13843368 intron AMPdeam - chrX 13843421 intron AMPdeam - chrX 13843474 intron AMPdeam - chrX_4_13840001 chrX_13840001 RAL-884 1191 chrX 13908799 13908810 chrX 13908876 13908888 4 78 2.0 5.5 3.8 0.8 89 chrX 13908799 intron mamo - chrX 13908844 intron mamo - chrX 13908888 intron mamo - chrX_4_13905001 chrX_13905001 RAL-884 1192 chrX 14561603 14561626 chrX 14562121 14562134 7 520 2.0 3.0 2.5 2.0 531 chrX 14561603 intergenic not near genes chrX 14561868 intergenic not near genes chrX 14562134 intergenic not near genes chrX_7_14560001 chrX_14560001 RAL-884 1193 chrX 14589693 14589708 chrX 14589923 14589949 pogo 5 239 1.0 1.0 1.0 2.5 256 chrX 14589693 intron CG9413 - chrX 14589821 intron CG9413 - chrX 14589949 intron CG9413 - chrX_5_14585001 chrX_14585001 RAL-884 1194 chrX 14636467 14636490 chrX 14641908 14641931 I-element 7 5434 1.0 4.5 2.8 1.8 5464 chrX 14636467 intron NetA - chrX 14639199 intron NetA - chrX 14641931 intron NetA - chrX_7_14635001 chrX_14635001 RAL-884 1195 chrX 14767943 14767975 chrX 14768023 14768054 4 80 2.5 0.0 1.2 1.8 111 chrX 14767943 intergenic not near genes chrX 14767998 intergenic not near genes chrX 14768054 intergenic not near genes chrX_4_14765001 chrX_14765001 RAL-884 1196 chrX 14778031 14778057 chrX 14782826 14782853 Doc 6 4792 0.5 2.0 1.2 2.7 4822 chrX 14778031 intergenic CG5347 + chrX 14780442 intergenic not near genes chrX 14782853 intergenic Ag5r2 - chrX_6_14780001 chrX_14780001 RAL-884 1197 chrX 15248273 15248283 chrX 15248338 15248359 4 68 2.0 2.0 2.0 1.3 86 chrX 15248273 intergenic not near genes chrX 15248316 intergenic not near genes chrX 15248359 intergenic not near genes chrX_4_15245001 chrX_15245001 RAL-884 1198 chrX 15413053 15413086 chrX 15417355 15417369 Juan 7 4291 3.0 1.5 2.2 2.2 4316 chrX 15413053 intron Cngl - chrX 15415211 intron Cngl - chrX 15417369 intron Cngl - chrX_7_15415001 chrX_15415001 RAL-884 1199 chrX 15421933 15421952 chrX 15423444 15423463 pogo 5 1511 2.5 1.0 1.8 1.8 1530 chrX 15421933 intron Cngl - chrX 15422698 intron Cngl - chrX 15423463 intron Cngl - chrX_5_15420001 chrX_15420001 RAL-884 1200 chrX 15519798 15519824 chrX 15519875 15519877 6 71 0.5 1.5 1.0 3.0 79 chrX 15519798 intron Ac13E - chrX 15519838 intron Ac13E - chrX 15519877 intron Ac13E - chrX_6_15515001 chrX_15515001 RAL-884 1201 chrX 15678046 15678055 chrX 15678114 15678132 4 75 5.0 2.5 3.8 0.8 86 chrX 15678046 intergenic CG12708 + chrX 15678089 intergenic CG12708 + chrX 15678132 intergenic CG12708 + chrX_4_15675001 chrX_15675001 RAL-884 1202 chrX 16365067 16365093 chrX 16365149 16365175 4 78 2.5 3.5 3.0 1.0 108 chrX 16365067 intron nonA + chrX 16365121 intron nonA + chrX 16365175 intron nonA + chrX_4_16365001 chrX_16365001 RAL-884 1203 chrX 16492645 16492676 chrX 16498222 16498247 mdg3 4 5576 2.5 1.5 2.0 1.3 5602 chrX 16492645 intron para - chrX 16495446 intron para - chrX 16498247 intron para - chrX_4_16495001 chrX_16495001 RAL-884 1204 chrX 16623486 16623511 chrX 16623571 16623575 4 80 0.5 0.0 0.2 3.3 89 chrX 16623486 intergenic not near genes chrX 16623530 intergenic Rok - chrX 16623575 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-884 1205 chrX 16689635 16689653 chrX 16689711 16689717 4 70 1.0 1.5 1.2 1.8 82 chrX 16689635 intron Sep4 - chrX 16689676 intron Sep4 - chrX 16689717 intron Sep4 - chrX_4_16685001 chrX_16685001 RAL-884 1206 chrX 16833210 16833221 chrX 16833295 16833306 4 85 2.0 0.0 1.0 2.0 96 chrX 16833210 intron CG13004 - chrX 16833258 intron CG13004 - chrX 16833306 intron CG13004 - chrX_4_16830001 chrX_16830001 RAL-884 1207 chrX 17282886 17282912 chrX 17282954 17282966 6 68 4.0 0.0 2.0 2.0 80 chrX 17282886 intron CG5445 + chrX 17282926 5` UTR CG5445 + chrX 17282966 5` UTR CG5445 + chrX_6_17280001 chrX_17280001 RAL-884 1208 chrX 17556013 17556045 chrX 17556140 17556171 8 126 0.5 0.0 0.2 6.7 158 chrX 17556013 intron CG43658 - chrX 17556092 intron CG43658 - chrX 17556171 intron CG43658 - chrX_8_17555001 chrX_17555001 RAL-884 1209 chrX 17587397 17587400 chrX 17587470 17587482 4 79 0.5 2.0 1.2 1.8 85 chrX 17587397 intron CG12991 + chrX 17587440 intron CG12991 + chrX 17587482 intron CG12991 + chrX_4_17585001 chrX_17585001 RAL-884 1210 chrX 17680898 17680922 chrX 17680967 17680976 8 68 1.0 1.5 1.2 3.6 78 chrX 17680898 intron chas - chrX 17680937 intron chas - chrX 17680976 intron chas - chrX_8_17680001 chrX_17680001 RAL-884 1211 chrX 18126601 18126834 chrX 18126724 18126906 5 85 0.5 0.0 0.2 4.2 305 chrX 18126601 intron CG32553 - chrX 18126754 intron CG32553 - chrX 18126906 intron CG32553 - chrX_5_18125001 chrX_18125001 RAL-884 1212 chrX 18344692 18344726 chrX 18344782 18344816 5 85 0.5 1.5 1.0 2.5 124 chrX 18344692 intron CG6123 - chrX 18344754 intron CG6123 - chrX 18344816 intron CG6123 - chrX_5_18340001 chrX_18340001 RAL-884 1213 chrX 18412805 18412835 chrX 18412905 18412935 4 98 2.0 4.5 3.2 1.0 130 chrX 18412805 intergenic not near genes chrX 18412870 intergenic not near genes chrX 18412935 intergenic not near genes chrX_4_18410001 chrX_18410001 RAL-884 1214 chrX 18512035 18512039 chrX 18512105 18512128 4 80 1.0 3.0 2.0 1.3 93 chrX 18512035 intron Ggt-1 - chrX 18512082 5` UTR Ggt-1 - chrX 18512128 5` UTR Ggt-1 - chrX_4_18510001 chrX_18510001 RAL-884 1215 chrX 18645034 18645046 chrX 18645121 18645133 4 89 1.0 2.5 1.8 1.4 99 chrX 18645034 intron Rip11 - chrX 18645084 intron Rip11 - chrX 18645133 intron Rip11 - chrX_4_18645001 chrX_18645001 RAL-884 1216 chrX 18832269 18832296 chrX 18832352 18832388 4 89 1.0 0.5 0.8 2.2 119 chrX 18832269 intergenic CG7101 +,Pvf1 + chrX 18832328 intergenic CG7101 +,Pvf1 + chrX 18832388 intergenic CG7101 +,Pvf1 + chrX_4_18830001 chrX_18830001 RAL-884 1217 chrX 19014382 19014392 chrX 19014440 19014455 4 63 2.5 2.5 2.5 1.1 73 chrX 19014382 intron CG43759 + chrX 19014418 intron CG43759 + chrX 19014455 intron CG43759 + chrX_4_19010001 chrX_19010001 RAL-884 1218 chrX 19060407 19060430 chrX 19065187 19065214 Doc 5 4782 1.0 2.5 1.8 1.8 4807 chrX 19060407 intron CG14190 + chrX 19062810 intron CG14190 + chrX 19065214 intron CG14190 + chrX_5_19060001 chrX_19060001 RAL-884 1219 chrX 19084099 19084121 chrX 19084217 19084224 4 115 0.0 1.0 0.5 2.7 125 chrX 19084099 intergenic CR45503 + chrX 19084162 intergenic CR45503 + chrX 19084224 intergenic CR45503 + chrX_4_19080001 chrX_19080001 RAL-884 1220 chrX 19099654 19099686 chrX 19099737 19099768 5 83 1.0 1.0 1.0 2.5 114 chrX 19099654 intergenic not near genes chrX 19099711 intergenic not near genes chrX 19099768 intergenic not near genes chrX_5_19095001 chrX_19095001 RAL-884 1221 chrX 13057298 13057300 chrX 19242812 19242814 5 6185514 4.5 4.0 4.2 1.0 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_5_16150001 chrX_16150001 RAL-884 1222 chrX 19320233 19320243 chrX 19320321 19320331 4 88 4.0 3.5 3.8 0.8 98 chrX 19320233 intron out - chrX 19320282 intron out - chrX 19320331 intron out - chrX_4_19320001 chrX_19320001 RAL-884 1223 chrX 19320245 19320254 chrX 19320319 19320342 6 85 2.0 3.5 2.8 1.6 97 chrX 19320245 intron out - chrX 19320294 intron out - chrX 19320342 intron out - chrX_6_19320001 chrX_19320001 RAL-884 1224 chrX 19325815 19325837 chrX 19326257 19326264 4 438 2.0 4.0 3.0 1.0 449 chrX 19325815 intergenic not near genes chrX 19326040 intergenic not near genes chrX 19326264 intergenic not near genes chrX_4_19325001 chrX_19325001 RAL-884 1225 chrX 19461147 19461157 chrX 19461243 19461253 4 96 2.0 0.5 1.2 1.8 106 chrX 19461147 intron kek5 + chrX 19461200 intron kek5 + chrX 19461253 intron kek5 + chrX_4_19460001 chrX_19460001 RAL-884 1226 chrX 19472130 19472145 chrX 19472698 19472710 jockey 4 566 3.5 4.5 4.0 0.8 580 chrX 19472130 intergenic kek5 + chrX 19472420 intergenic not near genes chrX 19472710 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-884 1227 chrX 19710081 19710098 chrX 19711862 19711884 S-element 8 1778 3.0 3.0 3.0 2.0 1803 chrX 19710081 intron meso18E - chrX 19710982 intron meso18E - chrX 19711884 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-884 1228 chrX 19822834 19822864 chrX 19823001 19823031 10 166 0.0 2.5 1.2 4.5 197 chrX 19822834 intergenic not near genes chrX 19822932 intergenic skpE - chrX 19823031 intergenic skpE - chrX_10_19820001 chrX_19820001 RAL-884 1229 chrX 19985296 19985299 chrX 19985378 19985381 4 81 1.5 3.0 2.2 1.2 85 chrX 19985296 intergenic not near genes chrX 19985338 intergenic not near genes chrX 19985381 intergenic not near genes chrX_4_19985001 chrX_19985001 RAL-884 1230 chrX 20041551 20041566 chrX 20041617 20041646 5 74 2.0 4.0 3.0 1.2 95 chrX 20041551 intron Dop2R - chrX 20041598 intron Dop2R - chrX 20041646 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-884 1231 chrX 20386597 20386622 chrX 20386923 20386936 4 320 3.5 3.5 3.5 0.9 339 chrX 20386597 intergenic not near genes chrX 20386766 intergenic not near genes chrX 20386936 intergenic not near genes chrX_4_20385001 chrX_20385001 RAL-884 1232 chrX 20443176 20443193 chrX 20443252 20443269 5 75 4.0 0.5 2.2 1.6 93 chrX 20443176 exon CG1695 + chrX 20443222 intron CG1695 + chrX 20443269 intron CG1695 + chrX_5_20440001 chrX_20440001 RAL-884 1233 chrX 20634429 20634445 chrX 20634514 20634524 4 83 4.0 1.0 2.5 1.1 95 chrX 20634429 intergenic not near genes chrX 20634476 intergenic not near genes chrX 20634524 intergenic not near genes chrX_4_20630001 chrX_20630001 RAL-884 1234 chrX 20940726 20940751 chrX 20942195 20942219 hobo 8 1467 4.0 2.5 3.2 1.9 1493 chrX 20940726 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942219 intergenic not near genes chrX_8_20940001 chrX_20940001 RAL-884 1235 chrX 21029166 21029180 chrX 21029381 21029392 4 213 1.5 4.0 2.8 1.1 226 chrX 21029166 3` UTR CG1529 - chrX 21029279 3` UTR CG1529 - chrX 21029392 3` UTR CG1529 - chrX_4_21025001 chrX_21025001 RAL-884 1236 chrX 21088050 21088072 chrX 21088178 21088197 5 125 1.5 0.0 0.8 2.8 147 chrX 21088050 intergenic not near genes chrX 21088124 intergenic not near genes chrX 21088197 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-884 1237 chrX 21275165 21275189 chrX 21275243 21275267 5 78 0.5 2.5 1.5 2.0 102 chrX 21275165 intron CG32521 - chrX 21275216 intron CG32521 - chrX 21275267 intron CG32521 - chrX_5_21275001 chrX_21275001 RAL-884 1238 chrX 21358079 21358093 chrX 21358159 21358173 4 80 1.0 0.5 0.8 2.2 94 chrX 21358079 intergenic sol +,Sep1 + chrX 21358126 intergenic Sep1 +,sol + chrX 21358173 intergenic Sep1 +,sol + chrX_4_21355001 chrX_21355001 RAL-884 1239 chrX 21428352 21428368 chrX 21428528 21428539 5 182 2.0 3.0 2.5 1.4 187 chrX 21428352 intron CG42343 - chrX 21428446 intron CG42343 - chrX 21428539 intron CG42343 - chrX_5_21425001 chrX_21425001 RAL-884 1240 chrX 21474408 21474435 chrX 21474773 21474779 1731 9 363 3.5 2.0 2.8 2.4 371 chrX 21474408 intergenic not near genes chrX 21474594 intergenic not near genes chrX 21474779 intergenic not near genes chrX_9_21470001 chrX_21470001 RAL-884 1241 chrX 21500569 21500589 chrX 21500770 21500790 4 201 0.0 3.0 1.5 1.6 221 chrX 21500569 intron CR45082 - chrX 21500680 intron CR45082 - chrX 21500790 intron CR45082 - chrX_4_21500001 chrX_21500001 RAL-884 1242 chrX 21516987 21517019 chrX 21517066 21517084 7 71 0.5 5.0 2.8 1.8 97 chrX 21516987 intron CR45082 - chrX 21517036 intron CR45082 - chrX 21517084 intron CR45082 - chrX_7_21515001 chrX_21515001 RAL-884 1243 chrX 21565414 21565432 chrX 21565492 21565501 5 76 0.5 1.0 0.8 2.8 87 chrX 21565414 intergenic not near genes chrX 21565458 intergenic not near genes chrX 21565501 intergenic not near genes chrX_5_21565001 chrX_21565001 RAL-884 1244 chrX 22448274 22448295 chrX 22448413 22448434 6 135 0.5 0.5 0.5 4.0 160 chrX 22448274 intron CG14615 - chrX 22448354 intron CG14615 - chrX 22448434 intron CG14615 - chrX_6_22445001 chrX_22445001 RAL-884 1245 chrX 22677304 22677327 chrX 22677513 22677536 6 205 0.0 1.5 0.8 3.3 232 chrX 22677304 intron CR44997 + chrX 22677420 intron CR44997 + chrX 22677536 intron CR44997 + chrX_6_22675001 chrX_22675001 RAL-884 1246 chrX 22771520 22771535 chrX 22774796 22774821 297 4 3286 3.5 3.0 3.2 1.0 3301 chrX 22771520 intron CR44997 + chrX 22773170 intron CR44997 + chrX 22774821 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-884 1247 chrX 22967509 22967512 chrX 23154686 23154689 diver 4 187177 2.5 3.5 3.0 1.0 187180 chrX 22967509 intergenic not near genes chrX 23061099 intergenic not near genes chrX 23154689 intergenic not near genes chrX_4_23060001 chrX_23060001 RAL-884 1248 chrX 22996323 22996337 chrX 23003555 23003569 roo 4 7232 3.0 1.5 2.2 1.2 7246 chrX 22996323 intron,intron stnA -,stnB - chrX 22999946 intron,intron stnA -,stnB - chrX 23003569 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-884 1249 chrY 975809 975819 chrY 975871 975898 6 90 140.5 171.5 156.0 0.0 89 chrY 975809 intergenic not near genes chrY 975854 intergenic not near genes chrY 975898 intergenic not near genes chrY_6_975001 chrY_975001 RAL-884