SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47471 47489 chr2L 52562 52594 jockey 6 5096 4.0 6.0 5.0 1.0 5123 chr2L 47471 intron Cda5 - chr2L 50032 intron Cda5 - chr2L 52594 intron Cda5 - chr2L_6_50001 chr2L_50001 RAL-879 2 chr2L 263300 263315 chr2L 263445 263460 7 142 3.0 4.5 3.8 1.5 160 chr2L 263300 intron,3` UTR CG3645 -,CG17075 - chr2L 263380 intron,3` UTR CG3645 -,CG17075 - chr2L 263460 intron,3` UTR CG3645 -,CG17075 - chr2L_7_260001 chr2L_260001 RAL-879 3 chr2L 544827 544860 chr2L 544910 544943 10 80 1.5 3.0 2.2 3.1 116 chr2L 544827 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544885 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544943 3` UTR Ets21C - chr2L_10_540001 chr2L_540001 RAL-879 4 chr2L 668434 668463 chr2L 668514 668525 6 75 1.5 3.5 2.5 1.7 91 chr2L 668434 intron ds - chr2L 668480 intron ds - chr2L 668525 intron ds - chr2L_6_665001 chr2L_665001 RAL-879 5 chr2L 686934 686951 chr2L 695956 695970 roo 5 9028 2.5 3.5 3.0 1.2 9036 chr2L 686934 intron ds - chr2L 691452 intron ds - chr2L 695970 intron ds - chr2L_5_690001 chr2L_690001 RAL-879 6 chr2L 763537 763549 chr2L 763605 763611 6 71 2.5 5.0 3.8 1.2 74 chr2L 763537 intergenic not near genes chr2L 763574 intergenic not near genes chr2L 763611 intergenic not near genes chr2L_6_760001 chr2L_760001 RAL-879 7 chr2L 877840 877866 chr2L 877921 877940 7 77 5.0 1.5 3.2 1.7 100 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877890 3` UTR,intron CG15824 -,ninaA + chr2L 877940 3` UTR,intron CG15824 -,ninaA + chr2L_7_875001 chr2L_875001 RAL-879 8 chr2L 922463 922489 chr2L 922544 922567 6 75 1.5 3.0 2.2 1.9 104 chr2L 922463 intergenic CG4341 + chr2L 922515 intergenic CG4341 + chr2L 922567 intergenic CG4341 + chr2L_6_920001 chr2L_920001 RAL-879 9 chr2L 976886 976907 chr2L 984520 984543 roo 4 7635 2.0 1.5 1.8 1.4 7657 chr2L 976886 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984543 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-879 10 chr2L 996724 996741 chr2L 1005818 1005836 roo 4 9094 1.0 1.0 1.0 2.0 9112 chr2L 996724 intergenic not near genes chr2L 1001280 intergenic not near genes chr2L 1005836 intergenic not near genes chr2L_4_1000001 chr2L_1000001 RAL-879 11 chr2L 1035576 1035593 chr2L 1035634 1035669 9 70 2.5 3.5 3.0 2.2 93 chr2L 1035576 intron IA-2 - chr2L 1035622 intron IA-2 - chr2L 1035669 intron IA-2 - chr2L_9_1035001 chr2L_1035001 RAL-879 12 chr2L 1220136 1220151 chr2L 1227602 1227615 blood 4 7465 5.0 3.5 4.2 0.8 7479 chr2L 1220136 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227615 intron CG42329 + chr2L_4_1220001 chr2L_1220001 RAL-879 13 chr2L 1678992 1679010 chr2L 1686443 1686475 blood 6 7458 0.0 2.0 1.0 3.0 7483 chr2L 1678992 intron chinmo + chr2L 1682734 intron chinmo + chr2L 1686475 intron chinmo + chr2L_6_1680001 chr2L_1680001 RAL-879 14 chr2L 1711356 1711367 chr2L 1711680 1711691 mdg3 4 324 7.5 6.0 6.8 0.5 335 chr2L 1711356 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711524 3` UTR frtz - chr2L 1711691 3` UTR frtz - chr2L_4_1710001 chr2L_1710001 RAL-879 15 chr2L 1711368 1711385 chr2L 1711678 1711708 mdg3 7 314 4.5 5.5 5.0 1.2 340 chr2L 1711368 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711538 3` UTR frtz - chr2L 1711708 3` UTR frtz - chr2L_7_1710001 chr2L_1710001 RAL-879 16 chr2L 1828401 1828432 chr2L 1828485 1828505 8 80 2.5 1.5 2.0 2.7 104 chr2L 1828401 intergenic not near genes chr2L 1828453 intergenic not near genes chr2L 1828505 intergenic not near genes chr2L_8_1825001 chr2L_1825001 RAL-879 17 chr2L 1915345 1915372 chr2L 1915774 1915795 7 426 0.5 4.5 2.5 2.0 450 chr2L 1915345 intron CG7337 + chr2L 1915570 intron CG7337 + chr2L 1915795 intron CG7337 + chr2L_7_1915001 chr2L_1915001 RAL-879 18 chr2L 2075529 2075543 chr2L 2075599 2075603 5 75 1.5 1.5 1.5 2.0 74 chr2L 2075529 intron dpr3 - chr2L 2075566 intron dpr3 - chr2L 2075603 intron dpr3 - chr2L_5_2075001 chr2L_2075001 RAL-879 19 chr2L 2100389 2100403 chr2L 2109526 2109543 roo 5 9141 1.0 2.0 1.5 2.0 9154 chr2L 2100389 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109543 intron dpr3 - chr2L_5_2100001 chr2L_2100001 RAL-879 20 chr2L 2112142 2112146 chr2L 2119773 2119802 opus 5 7641 2.0 7.0 4.5 0.9 7660 chr2L 2112142 intergenic not near genes chr2L 2115972 intergenic not near genes chr2L 2119802 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-879 21 chr2L 2260812 2260823 chr2L 2260897 2260909 7 85 7.0 2.0 4.5 1.3 97 chr2L 2260812 intergenic not near genes chr2L 2260860 intergenic not near genes chr2L 2260909 intergenic not near genes chr2L_7_2260001 chr2L_2260001 RAL-879 22 chr2L 2260825 2260837 chr2L 2260889 2260915 5 80 3.5 1.0 2.2 1.6 90 chr2L 2260825 intergenic not near genes chr2L 2260870 intergenic not near genes chr2L 2260915 intergenic not near genes chr2L_5_2260001 chr2L_2260001 RAL-879 23 chr2L 2428784 2428820 chr2L 2428883 2428894 13 92 3.0 3.5 3.2 3.1 110 chr2L 2428784 5` UTR dpp + chr2L 2428839 5` UTR dpp + chr2L 2428894 5` UTR dpp + chr2L_13_2425001 chr2L_2425001 RAL-879 24 chr2L 2449423 2449448 chr2L 2449594 2449600 5 167 2.5 2.5 2.5 1.4 177 chr2L 2449423 intron dpp + chr2L 2449512 intron dpp + chr2L 2449600 intron dpp + chr2L_5_2445001 chr2L_2445001 RAL-879 25 chr2L 2499926 2499961 chr2L 2500026 2500045 4 88 1.5 2.0 1.8 1.4 119 chr2L 2499926 intergenic not near genes chr2L 2499986 intergenic not near genes chr2L 2500045 intergenic not near genes chr2L_4_2495001 chr2L_2495001 RAL-879 26 chr2L 2667628 2667653 chr2L 2667707 2667731 5 75 5.0 4.0 4.5 0.9 103 chr2L 2667628 intergenic not near genes chr2L 2667680 intergenic not near genes chr2L 2667731 intergenic not near genes chr2L_5_2665001 chr2L_2665001 RAL-879 27 chr2L 2772616 2772630 chr2L 2779198 2779212 297 4 6582 1.0 0.5 0.8 2.2 6596 chr2L 2772616 3` UTR Syt1 - chr2L 2775914 intron Syt1 - chr2L 2779212 3` UTR Syt1 - chr2L_4_2775001 chr2L_2775001 RAL-879 28 chr2L 2793951 2793968 chr2L 2794028 2794034 7 75 4.0 4.0 4.0 1.4 83 chr2L 2793951 intron Syt1 - chr2L 2793992 intron Syt1 - chr2L 2794034 intron Syt1 - chr2L_7_2790001 chr2L_2790001 RAL-879 29 chr2L 2895686 2895717 chr2L 2895772 2895781 9 79 3.0 4.0 3.5 2.0 95 chr2L 2895686 intron lilli + chr2L 2895734 intron lilli + chr2L 2895781 intron lilli + chr2L_9_2895001 chr2L_2895001 RAL-879 30 chr2L 3073035 3073065 chr2L 3078234 3078251 copia 7 5191 2.5 4.0 3.2 1.7 5216 chr2L 3073035 intron toc - chr2L 3075643 intron toc - chr2L 3078251 intron toc - chr2L_7_3075001 chr2L_3075001 RAL-879 31 chr2L 3108874 3108897 chr2L 3108951 3108974 6 74 1.0 0.0 0.5 4.0 100 chr2L 3108874 intron toc - chr2L 3108924 intron toc - chr2L 3108974 intron toc - chr2L_6_3105001 chr2L_3105001 RAL-879 32 chr2L 3172079 3172104 chr2L 3172174 3172191 10 92 3.0 9.0 6.0 1.4 112 chr2L 3172079 intergenic not near genes chr2L 3172135 intergenic not near genes chr2L 3172191 intergenic not near genes chr2L_10_3170001 chr2L_3170001 RAL-879 33 chr2L 3251505 3251525 chr2L 3259070 3259072 springer 4 7558 2.0 4.5 3.2 1.0 7567 chr2L 3251505 intergenic not near genes chr2L 3255288 intergenic not near genes chr2L 3259072 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-879 34 chr2L 3291237 3291268 chr2L 3291317 3291339 8 71 1.5 1.0 1.2 3.6 102 chr2L 3291237 intergenic CG9664 - chr2L 3291288 3` UTR CG9664 - chr2L 3291339 3` UTR CG9664 - chr2L_8_3290001 chr2L_3290001 RAL-879 35 chr2L 3312627 3312631 chr2L 3312707 3312711 4 80 5.5 2.5 4.0 0.8 84 chr2L 3312627 intron CG3277 + chr2L 3312669 intron CG3277 + chr2L 3312711 intron CG3277 + chr2L_4_3310001 chr2L_3310001 RAL-879 36 chr2L 3523034 3523047 chr2L 3523145 3523160 7 112 2.0 3.0 2.5 2.0 126 chr2L 3523034 exon Sr-CIV - chr2L 3523097 intron Sr-CIV - chr2L 3523160 exon Sr-CIV - chr2L_7_3520001 chr2L_3520001 RAL-879 37 chr2L 3627885 3627901 chr2L 3627971 3627989 5 87 6.0 3.5 4.8 0.9 104 chr2L 3627885 intron for - chr2L 3627937 intron for - chr2L 3627989 intron for - chr2L_5_3625001 chr2L_3625001 RAL-879 38 chr2L 3820658 3820687 chr2L 3820985 3820996 9 322 2.0 2.5 2.2 2.8 338 chr2L 3820658 intergenic not near genes chr2L 3820827 intergenic not near genes chr2L 3820996 intergenic not near genes chr2L_9_3820001 chr2L_3820001 RAL-879 39 chr2L 3891664 3891925 chr2L 3891715 3891984 19 74 2.0 1.0 1.5 7.6 320 chr2L 3891664 intron capu - chr2L 3891824 intron capu - chr2L 3891984 intron capu - chr2L_19_3890001 chr2L_3890001 RAL-879 40 chr2L 3906036 3906066 chr2L 3906182 3906212 8 139 2.0 2.0 2.0 2.7 176 chr2L 3906036 intron fred - chr2L 3906124 intron fred - chr2L 3906212 intron fred - chr2L_8_3905001 chr2L_3905001 RAL-879 41 chr2L 4066059 4066064 chr2L 4068860 4068889 Juan 4 2819 2.0 3.0 2.5 1.1 2830 chr2L 4066059 intron ed + chr2L 4067474 intron ed + chr2L 4068889 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-879 42 chr2L 4159411 4159439 chr2L 4159611 4159637 5 197 3.0 1.5 2.2 1.6 226 chr2L 4159411 intergenic not near genes chr2L 4159524 intergenic not near genes chr2L 4159637 intergenic not near genes chr2L_5_4155001 chr2L_4155001 RAL-879 43 chr2L 4166377 4166407 chr2L 4166459 4166488 8 77 1.5 2.0 1.8 2.9 111 chr2L 4166377 intergenic Or24a - chr2L 4166432 intergenic Or24a - chr2L 4166488 intergenic Or24a - chr2L_8_4165001 chr2L_4165001 RAL-879 44 chr2L 4317889 4317909 chr2L 4317961 4317987 4 70 2.5 2.0 2.2 1.2 98 chr2L 4317889 intron tutl + chr2L 4317938 intron tutl + chr2L 4317987 intron tutl + chr2L_4_4315001 chr2L_4315001 RAL-879 45 chr2L 4351495 4351502 chr2L 4351548 4351557 4 57 2.0 4.5 3.2 1.0 62 chr2L 4351495 intergenic CR44700 + chr2L 4351526 intergenic CR44700 + chr2L 4351557 intergenic CR44700 + chr2L_4_4350001 chr2L_4350001 RAL-879 46 chr2L 4601704 4601734 chr2L 4609145 4609155 mdg1 6 7428 4.0 4.0 4.0 1.2 7451 chr2L 4601704 intron dp - chr2L 4605430 intron dp - chr2L 4609155 intron dp - chr2L_6_4605001 chr2L_4605001 RAL-879 47 chr2L 4819495 4819518 chr2L 4819617 4819622 6 114 2.0 3.5 2.8 1.6 127 chr2L 4819495 intergenic not near genes chr2L 4819558 intergenic not near genes chr2L 4819622 intergenic not near genes chr2L_6_4815001 chr2L_4815001 RAL-879 48 chr2L 4918166 4918198 chr2L 4923239 4923271 jockey 4 5073 2.5 3.0 2.8 1.1 5105 chr2L 4918166 intron hoe1 - chr2L 4920718 intron hoe1 - chr2L 4923271 intron hoe1 - chr2L_4_4920001 chr2L_4920001 RAL-879 49 chr2L 4997949 4997985 chr2L 4998036 4998059 12 77 4.5 2.5 3.5 2.7 110 chr2L 4997949 intron Rtnl1 - chr2L 4998004 intron Rtnl1 - chr2L 4998059 intron Rtnl1 - chr2L_12_4995001 chr2L_4995001 RAL-879 50 chr2L 5240975 5241005 chr2L 5241053 5241067 4 74 0.5 0.0 0.2 3.3 92 chr2L 5240975 intron tkv - chr2L 5241021 intron tkv - chr2L 5241067 intron tkv - chr2L_4_5240001 chr2L_5240001 RAL-879 51 chr2L 5827726 5827729 chr2L 5836729 5836737 roo 4 9006 4.5 3.5 4.0 0.8 9011 chr2L 5827726 intron TrissinR + chr2L 5832232 intron TrissinR + chr2L 5836737 intron TrissinR + chr2L_4_5830001 chr2L_5830001 RAL-879 52 chr2L 5827730 5827737 chr2L 5836718 5836732 roo 7 8998 3.0 3.5 3.2 1.7 9002 chr2L 5827730 intron TrissinR + chr2L 5832231 intron TrissinR + chr2L 5836732 intron TrissinR + chr2L_7_5830001 chr2L_5830001 RAL-879 53 chr2L 5989034 5989057 chr2L 5989110 5989131 4 72 2.5 1.0 1.8 1.4 97 chr2L 5989034 intergenic ifc +,lid - chr2L 5989082 intergenic ifc +,lid - chr2L 5989131 intergenic lid -,ifc + chr2L_4_5985001 chr2L_5985001 RAL-879 54 chr2L 5993339 5993355 chr2L 5993430 5993446 4 89 3.5 4.5 4.0 0.8 107 chr2L 5993339 exon lid - chr2L 5993392 intron lid - chr2L 5993446 intron lid - chr2L_4_5990001 chr2L_5990001 RAL-879 55 chr2L 6037034 6037061 chr2L 6037112 6037133 4 76 3.0 3.5 3.2 1.0 99 chr2L 6037034 3` UTR CG9117 - chr2L 6037084 3` UTR CG9117 - chr2L 6037133 exon CG9117 - chr2L_4_6035001 chr2L_6035001 RAL-879 56 chr2L 6070896 6070924 chr2L 6070985 6070986 4 73 1.0 0.0 0.5 2.7 90 chr2L 6070896 intergenic Kr-h2 +,CG9154 - chr2L 6070941 intergenic Kr-h2 +,CG9154 - chr2L 6070986 intergenic Kr-h2 +,CG9154 - chr2L_4_6070001 chr2L_6070001 RAL-879 57 chr2L 6185446 6185470 chr2L 6185518 6185546 5 72 3.0 2.5 2.8 1.3 100 chr2L 6185446 intron CG34380 + chr2L 6185496 intron CG34380 + chr2L 6185546 intron CG34380 + chr2L_5_6185001 chr2L_6185001 RAL-879 58 chr2L 6318738 6318756 chr2L 6318892 6318901 6 152 3.5 2.5 3.0 1.5 163 chr2L 6318738 intron Ddr + chr2L 6318820 intron Ddr + chr2L 6318901 intron Ddr + chr2L_6_6315001 chr2L_6315001 RAL-879 59 chr2L 6426855 6426887 chr2L 6445115 6445147 roo 10 18255 3.5 4.0 3.8 2.1 18292 chr2L 6426855 3` UTR CG9527 - chr2L 6436001 intron CG9527 - chr2L 6445147 exon CG9527 - chr2L_10_6435001 chr2L_6435001 RAL-879 60 chr2L 6458592 6458610 chr2L 6458660 6458690 5 68 2.0 2.0 2.0 1.7 98 chr2L 6458592 3` UTR frj + chr2L 6458641 3` UTR frj + chr2L 6458690 3` UTR frj + chr2L_5_6455001 chr2L_6455001 RAL-879 61 chr2L 6598133 6598147 chr2L 6599073 6599088 5 947 3.0 2.0 2.5 1.4 955 chr2L 6598133 intron CG11319 - chr2L 6598610 intron CG11319 - chr2L 6599088 intron CG11319 - chr2L_5_6595001 chr2L_6595001 RAL-879 62 chr2L 6626901 6626916 chr2L 6626986 6626987 4 81 4.0 3.5 3.8 0.8 86 chr2L 6626901 intron Oatp26F - chr2L 6626944 intron Oatp26F - chr2L 6626987 intron Oatp26F - chr2L_4_6625001 chr2L_6625001 RAL-879 63 chr2L 6655527 6655547 chr2L 6655889 6655908 5 361 3.0 5.0 4.0 1.0 381 chr2L 6655527 exon CG31633 - chr2L 6655718 exon CG31633 - chr2L 6655908 exon CG31633 - chr2L_5_6655001 chr2L_6655001 RAL-879 64 chr2L 6744567 6744585 chr2L 6744652 6744671 4 86 2.5 2.0 2.2 1.2 104 chr2L 6744567 intron CG11221 + chr2L 6744619 intron CG11221 + chr2L 6744671 intron,3` UTR CG11221 +,CG31910 - chr2L_4_6740001 chr2L_6740001 RAL-879 65 chr2L 6772006 6772019 chr2L 6772071 6772087 4 69 4.0 4.0 4.0 0.8 81 chr2L 6772006 intron CG11321 - chr2L 6772046 intron CG11321 - chr2L 6772087 intron CG11321 - chr2L_4_6770001 chr2L_6770001 RAL-879 66 chr2L 6783403 6783415 chr2L 6783491 6783504 4 88 10.5 4.0 7.2 0.5 101 chr2L 6783403 intron nrv1 - chr2L 6783454 intron nrv1 - chr2L 6783504 intron nrv1 - chr2L_4_6780001 chr2L_6780001 RAL-879 67 chr2L 6799555 6799568 chr2L 6799636 6799636 4 79 1.5 1.5 1.5 1.6 81 chr2L 6799555 5` UTR CR43610 + chr2L 6799596 5` UTR CR43610 + chr2L 6799636 intergenic CR43610 +,CG17376 - chr2L_4_6795001 chr2L_6795001 RAL-879 68 chr2L 6876778 6876806 chr2L 6882968 6882971 diver 4 6180 5.0 5.5 5.2 0.6 6193 chr2L 6876778 intron Nlg2 + chr2L 6879874 intron Nlg2 + chr2L 6882971 intron Nlg2 + chr2L_4_6875001 chr2L_6875001 RAL-879 69 chr2L 7325920 7325935 chr2L 7325998 7326005 4 78 4.5 1.0 2.8 1.1 85 chr2L 7325920 intergenic not near genes chr2L 7325962 intergenic not near genes chr2L 7326005 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-879 70 chr2L 7336906 7336914 chr2L 7336989 7336994 4 81 4.0 4.0 4.0 0.8 88 chr2L 7336906 intron Wnt6 + chr2L 7336950 intron Wnt6 + chr2L 7336994 intron Wnt6 + chr2L_4_7335001 chr2L_7335001 RAL-879 71 chr2L 7555217 7555232 chr2L 7555294 7555298 4 72 3.0 3.5 3.2 1.0 81 chr2L 7555217 intron RapGAP1 - chr2L 7555258 intron RapGAP1 - chr2L 7555298 intron RapGAP1 - chr2L_4_7555001 chr2L_7555001 RAL-879 72 chr2L 7579895 7579923 chr2L 7579977 7580005 9 78 1.5 2.0 1.8 3.2 110 chr2L 7579895 intergenic not near genes chr2L 7579950 intergenic not near genes chr2L 7580005 intergenic not near genes chr2L_9_7575001 chr2L_7575001 RAL-879 73 chr2L 7629187 7629192 chr2L 7629244 7629269 4 69 0.5 2.5 1.5 1.6 82 chr2L 7629187 intergenic not near genes chr2L 7629228 intergenic not near genes chr2L 7629269 intergenic not near genes chr2L_4_7625001 chr2L_7625001 RAL-879 74 chr2L 7668622 7668654 chr2L 7668725 7668752 5 100 1.5 3.5 2.5 1.4 130 chr2L 7668622 intron,intron Slob -,Myo28B1 + chr2L 7668687 intron,intron Slob -,Myo28B1 + chr2L 7668752 intron,intron Slob -,Myo28B1 + chr2L_5_7665001 chr2L_7665001 RAL-879 75 chr2L 7959050 7959073 chr2L 7960452 7960467 pogo 7 1404 2.5 0.0 1.2 3.2 1417 chr2L 7959050 intron Snoo - chr2L 7959758 intron Snoo - chr2L 7960467 intron Snoo - chr2L_7_7955001 chr2L_7955001 RAL-879 76 chr2L 7977097 7977110 chr2L 7984073 7984079 297 4 6974 3.0 4.0 3.5 0.9 6982 chr2L 7977097 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984079 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-879 77 chr2L 8044106 8044128 chr2L 8044175 8044207 5 72 2.5 3.0 2.8 1.3 101 chr2L 8044106 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044207 intron CG7466 + chr2L_5_8040001 chr2L_8040001 RAL-879 78 chr2L 8244738 8244745 chr2L 8244860 8244867 4 122 1.0 3.5 2.2 1.2 129 chr2L 8244738 intron CG8086 - chr2L 8244802 intron CG8086 - chr2L 8244867 intron CG8086 - chr2L_4_8240001 chr2L_8240001 RAL-879 79 chr2L 8285019 8285037 chr2L 8285095 8285108 4 72 1.0 0.5 0.8 2.2 89 chr2L 8285019 intron Btk29A - chr2L 8285064 intron Btk29A - chr2L 8285108 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-879 80 chr2L 8286170 8286193 chr2L 8286247 8286270 4 72 2.0 2.0 2.0 1.3 100 chr2L 8286170 intron Btk29A - chr2L 8286220 intron Btk29A - chr2L 8286270 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-879 81 chr2L 8452420 8452449 chr2L 8461589 8461594 roo 7 9164 3.0 4.0 3.5 1.6 9174 chr2L 8452420 intron fu12 - chr2L 8457007 intron fu12 - chr2L 8461594 intron fu12 - chr2L_7_8455001 chr2L_8455001 RAL-879 82 chr2L 8614249 8614276 chr2L 8614327 8614340 4 72 1.5 3.5 2.5 1.1 91 chr2L 8614249 intron Sema-1a + chr2L 8614294 intron Sema-1a + chr2L 8614340 intron Sema-1a + chr2L_4_8610001 chr2L_8610001 RAL-879 83 chr2L 8629024 8629031 chr2L 8629080 8629115 5 75 1.0 2.0 1.5 2.0 91 chr2L 8629024 intron Sema-1a + chr2L 8629070 intron Sema-1a + chr2L 8629115 intron Sema-1a + chr2L_5_8625001 chr2L_8625001 RAL-879 84 chr2L 8719213 8719235 chr2L 8719286 8719308 5 75 1.5 2.0 1.8 1.8 95 chr2L 8719213 intron raw - chr2L 8719260 intron raw - chr2L 8719308 intron raw - chr2L_5_8715001 chr2L_8715001 RAL-879 85 chr2L 8902458 8902485 chr2L 8902597 8902632 4 141 0.5 1.0 0.8 2.2 174 chr2L 8902458 intron CG34398 + chr2L 8902545 intron CG34398 + chr2L 8902632 intron CG34398 + chr2L_4_8900001 chr2L_8900001 RAL-879 86 chr2L 9000288 9000305 chr2L 9007788 9007815 roo 8 7505 5.5 3.0 4.2 1.5 7527 chr2L 9000288 intergenic Try29F + chr2L 9004052 intergenic not near genes chr2L 9007815 intergenic not near genes chr2L_8_9000001 chr2L_9000001 RAL-879 87 chr2L 9068174 9068207 chr2L 9068251 9068284 4 77 3.0 1.5 2.2 1.2 110 chr2L 9068174 intron CG31708 - chr2L 9068229 intron CG31708 - chr2L 9068284 intron CG31708 - chr2L_4_9065001 chr2L_9065001 RAL-879 88 chr2L 9084339 9084339 chr2L 16217659 16217660 4 7133321 15.5 23.0 19.2 0.2 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-879 89 chr2L 9095585 9095598 chr2L 9095661 9095683 4 83 2.0 3.0 2.5 1.1 98 chr2L 9095585 intergenic not near genes chr2L 9095634 intergenic not near genes chr2L 9095683 intergenic not near genes chr2L_4_9095001 chr2L_9095001 RAL-879 90 chr2L 9128587 9128604 chr2L 9128677 9128686 5 86 1.0 4.0 2.5 1.4 99 chr2L 9128587 intron CG32982 + chr2L 9128636 intron CG32982 + chr2L 9128686 intron CG32982 + chr2L_5_9125001 chr2L_9125001 RAL-879 91 chr2L 9217984 9218003 chr2L 9222755 9222790 Doc 4 4783 2.0 0.0 1.0 2.0 4806 chr2L 9217984 intron tai + chr2L 9220387 intron tai + chr2L 9222790 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-879 92 chr2L 9251164 9251176 chr2L 9251244 9251248 5 85 5.0 5.5 5.2 0.8 84 chr2L 9251164 intergenic aust -,borr - chr2L 9251206 intergenic aust -,borr - chr2L 9251248 intergenic aust -,borr - chr2L_5_9250001 chr2L_9250001 RAL-879 93 chr2L 9297389 9297401 chr2L 9297456 9297478 7 72 4.0 4.5 4.2 1.3 89 chr2L 9297389 3` UTR Ggamma30A + chr2L 9297434 3` UTR Ggamma30A + chr2L 9297478 3` UTR Ggamma30A + chr2L_7_9295001 chr2L_9295001 RAL-879 94 chr2L 9304350 9304520 chr2L 9304434 9304579 5 75 1.0 1.0 1.0 2.5 229 chr2L 9304350 intergenic CR42844 - chr2L 9304464 3` UTR CR42844 - chr2L 9304579 3` UTR CR42844 - chr2L_5_9300001 chr2L_9300001 RAL-879 95 chr2L 9493250 9493259 chr2L 9493334 9493343 4 84 5.0 4.5 4.8 0.7 93 chr2L 9493250 intron Gdi - chr2L 9493296 intron Gdi - chr2L 9493343 intron Gdi - chr2L_4_9490001 chr2L_9490001 RAL-879 96 chr2L 9509344 9509351 chr2L 9509407 9509432 4 77 0.5 0.0 0.2 3.3 88 chr2L 9509344 intron CG33298 + chr2L 9509388 intron CG33298 + chr2L 9509432 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-879 97 chr2L 9843817 9843831 chr2L 9843896 9843910 4 79 4.0 2.0 3.0 1.0 93 chr2L 9843817 intron nAChRalpha6 - chr2L 9843864 intron nAChRalpha6 - chr2L 9843910 intron nAChRalpha6 - chr2L_4_9840001 chr2L_9840001 RAL-879 98 chr2L 9973732 9973755 chr2L 9980847 9980860 HMS-Beagle 9 7111 3.5 6.0 4.8 1.6 7128 chr2L 9973732 intergenic not near genes chr2L 9977296 intergenic not near genes chr2L 9980860 intergenic not near genes chr2L_9_9975001 chr2L_9975001 RAL-879 99 chr2L 9986351 9986379 chr2L 9986445 9986457 5 87 3.0 3.5 3.2 1.2 106 chr2L 9986351 intron bib + chr2L 9986404 intron bib + chr2L 9986457 intron bib + chr2L_5_9985001 chr2L_9985001 RAL-879 100 chr2L 10105282 10105313 chr2L 10105356 10105389 6 74 2.0 2.5 2.2 1.9 107 chr2L 10105282 intron,intron CG44153 -,CG34109 + chr2L 10105336 intron,intron CG44153 -,CG34109 + chr2L 10105389 intron,intron CG44153 -,CG34109 + chr2L_6_10105001 chr2L_10105001 RAL-879 101 chr2L 10474402 10474409 chr2L 10474464 10474469 4 71 2.5 2.5 2.5 1.1 67 chr2L 10474402 intergenic RluA-1 - chr2L 10474436 intergenic RluA-1 - chr2L 10474469 intergenic RluA-1 - chr2L_4_10470001 chr2L_10470001 RAL-879 102 chr2L 10480328 10480336 chr2L 10480405 10480414 4 76 2.5 0.5 1.5 1.6 86 chr2L 10480328 intron RluA-2 + chr2L 10480371 intron RluA-2 + chr2L 10480414 intron RluA-2 + chr2L_4_10480001 chr2L_10480001 RAL-879 103 chr2L 10580804 10580818 chr2L 10580879 10580889 4 77 1.5 4.5 3.0 1.0 85 chr2L 10580804 intron Trim9 + chr2L 10580846 intron Trim9 + chr2L 10580889 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-879 104 chr2L 10628363 10628385 chr2L 10628514 10628529 4 149 4.5 2.5 3.5 0.9 166 chr2L 10628363 intergenic Trim9 + chr2L 10628446 intergenic Trim9 + chr2L 10628529 intergenic Trim9 + chr2L_4_10625001 chr2L_10625001 RAL-879 105 chr2L 10628388 10628393 chr2L 10628513 10628526 4 140 4.0 2.0 3.0 1.0 138 chr2L 10628388 intergenic Trim9 + chr2L 10628457 intergenic Trim9 + chr2L 10628526 intergenic Trim9 + chr2L_4_10625001 chr2L_10625001 RAL-879 106 chr2L 10631221 10631238 chr2L 10631345 10631370 4 130 1.5 0.0 0.8 2.2 149 chr2L 10631221 intron CG7329 - chr2L 10631296 intron CG7329 - chr2L 10631370 intron CG7329 - chr2L_4_10630001 chr2L_10630001 RAL-879 107 chr2L 10640638 10640671 chr2L 10640727 10640760 10 87 3.5 2.0 2.8 2.6 122 chr2L 10640638 exon CG31872 + chr2L 10640699 exon CG31872 + chr2L 10640760 exon CG31872 + chr2L_10_10640001 chr2L_10640001 RAL-879 108 chr2L 10673747 10673770 chr2L 10673829 10673849 5 81 2.0 1.0 1.5 2.0 102 chr2L 10673747 intergenic not near genes chr2L 10673798 intergenic not near genes chr2L 10673849 intergenic not near genes chr2L_5_10670001 chr2L_10670001 RAL-879 109 chr2L 10862868 10862881 chr2L 10864462 10864478 Rt1c 6 1598 5.0 6.5 5.8 0.9 1610 chr2L 10862868 3` UTR CR43807 - chr2L 10863673 intron CR43807 - chr2L 10864478 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-879 110 chr2L 10946943 10946975 chr2L 10956158 10956178 roo 6 9207 1.5 7.5 4.5 1.1 9235 chr2L 10946943 intron dpr2 - chr2L 10951560 intron dpr2 - chr2L 10956178 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-879 111 chr2L 11070539 11070571 chr2L 11070617 11070647 7 77 2.0 2.5 2.2 2.2 108 chr2L 11070539 intergenic CG14915 + chr2L 11070593 intergenic CG14915 + chr2L 11070647 intergenic CG14915 + chr2L_7_11070001 chr2L_11070001 RAL-879 112 chr2L 11084672 11084697 chr2L 11084807 11084830 4 134 4.0 1.5 2.8 1.1 158 chr2L 11084672 intron AstCC - chr2L 11084751 intron AstCC - chr2L 11084830 exon AstCC - chr2L_4_11080001 chr2L_11080001 RAL-879 113 chr2L 11312335 11312346 chr2L 11312418 11312420 4 80 4.0 4.0 4.0 0.8 85 chr2L 11312335 intergenic not near genes chr2L 11312378 intergenic not near genes chr2L 11312420 intergenic not near genes chr2L_4_11310001 chr2L_11310001 RAL-879 114 chr2L 11563637 11563668 chr2L 11568841 11568872 copia 8 5200 2.5 1.0 1.8 2.9 5235 chr2L 11563637 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568872 intergenic not near genes chr2L_8_11565001 chr2L_11565001 RAL-879 115 chr2L 11612670 11612696 chr2L 11612758 11612784 7 84 3.5 3.5 3.5 1.6 114 chr2L 11612670 intron kek2 + chr2L 11612727 intron kek2 + chr2L 11612784 intron kek2 + chr2L_7_11610001 chr2L_11610001 RAL-879 116 chr2L 11642291 11642296 chr2L 11642360 11642379 4 76 5.5 6.0 5.8 0.6 88 chr2L 11642291 intergenic not near genes chr2L 11642335 intergenic not near genes chr2L 11642379 intergenic not near genes chr2L_4_11640001 chr2L_11640001 RAL-879 117 chr2L 11713510 11713539 chr2L 11720974 11721007 blood 9 7460 1.5 3.0 2.2 2.8 7497 chr2L 11713510 intergenic not near genes chr2L 11717258 intergenic not near genes chr2L 11721007 intergenic CR44143 + chr2L_9_11715001 chr2L_11715001 RAL-879 118 chr2L 11729497 11729522 chr2L 11729580 11729580 7 77 2.5 1.5 2.0 2.3 83 chr2L 11729497 intergenic not near genes chr2L 11729538 intergenic not near genes chr2L 11729580 intergenic not near genes chr2L_7_11725001 chr2L_11725001 RAL-879 119 chr2L 11770607 11770621 chr2L 11770694 11770707 4 86 5.5 2.0 3.8 0.8 100 chr2L 11770607 intergenic not near genes chr2L 11770657 intergenic not near genes chr2L 11770707 intergenic not near genes chr2L_4_11770001 chr2L_11770001 RAL-879 120 chr2L 11820432 11820462 chr2L 11820511 11820543 11 79 0.5 3.0 1.8 3.9 111 chr2L 11820432 intron Pde1c - chr2L 11820488 intron Pde1c - chr2L 11820543 intron Pde1c - chr2L_11_11820001 chr2L_11820001 RAL-879 121 chr2L 11922518 11922524 chr2L 11922610 11922618 4 104 2.5 4.0 3.2 1.0 100 chr2L 11922518 intron Pde1c - chr2L 11922568 intron Pde1c - chr2L 11922618 intron Pde1c - chr2L_4_11920001 chr2L_11920001 RAL-879 122 chr2L 11953797 11953825 chr2L 11953880 11953896 5 76 5.0 3.5 4.2 1.0 99 chr2L 11953797 3` UTR CR43314 - chr2L 11953846 3` UTR CR43314 - chr2L 11953896 3` UTR CR43314 - chr2L_5_11950001 chr2L_11950001 RAL-879 123 chr2L 12022087 12022114 chr2L 12022762 12022788 7 672 3.5 3.0 3.2 1.7 701 chr2L 12022087 intergenic not near genes chr2L 12022438 intergenic not near genes chr2L 12022788 intergenic not near genes chr2L_7_12020001 chr2L_12020001 RAL-879 124 chr2L 12123873 12123901 chr2L 12124084 12124107 9 207 3.5 6.0 4.8 1.6 234 chr2L 12123873 intron CG17211 + chr2L 12123990 intron CG17211 + chr2L 12124107 intron CG17211 + chr2L_9_12120001 chr2L_12120001 RAL-879 125 chr2L 12365794 12365804 chr2L 12365934 12365934 5 143 1.5 3.5 2.5 1.4 140 chr2L 12365794 intron bru-2 + chr2L 12365864 intron bru-2 + chr2L 12365934 intron bru-2 + chr2L_5_12365001 chr2L_12365001 RAL-879 126 chr2L 12487906 12487915 chr2L 12487967 12487996 4 74 3.0 4.0 3.5 0.9 90 chr2L 12487906 intron bun - chr2L 12487951 intron bun - chr2L 12487996 intron bun - chr2L_4_12485001 chr2L_12485001 RAL-879 127 chr2L 12529258 12529448 chr2L 12529381 12529523 5 84 1.0 1.0 1.0 2.5 265 chr2L 12529258 intron bun - chr2L 12529390 intron bun - chr2L 12529523 intron bun - chr2L_5_12525001 chr2L_12525001 RAL-879 128 chr2L 12682874 12682906 chr2L 12682953 12682980 10 73 4.0 4.0 4.0 2.0 106 chr2L 12682874 intron pdm2 + chr2L 12682927 intron pdm2 + chr2L 12682980 intron pdm2 + chr2L_10_12680001 chr2L_12680001 RAL-879 129 chr2L 12736687 12736706 chr2L 12736763 12736782 6 73 3.0 6.5 4.8 1.0 95 chr2L 12736687 intron MRP + chr2L 12736734 intron MRP + chr2L 12736782 intron MRP + chr2L_6_12735001 chr2L_12735001 RAL-879 130 chr2L 12739182 12739202 chr2L 12743962 12743983 Doc 7 4780 2.5 5.5 4.0 1.4 4801 chr2L 12739182 exon MRP + chr2L 12741582 intron MRP + chr2L 12743983 exon MRP + chr2L_7_12740001 chr2L_12740001 RAL-879 131 chr2L 12751313 12751340 chr2L 12751396 12751405 7 77 1.5 3.5 2.5 2.0 92 chr2L 12751313 intergenic not near genes chr2L 12751359 intergenic not near genes chr2L 12751405 intergenic not near genes chr2L_7_12750001 chr2L_12750001 RAL-879 132 chr2L 12861701 12861730 chr2L 12863159 12863174 hobo 13 1459 2.0 3.5 2.8 3.4 1473 chr2L 12861701 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863174 intergenic not near genes chr2L_13_12860001 chr2L_12860001 RAL-879 133 chr2L 12933853 12933865 chr2L 12941319 12941328 blood 6 7464 7.0 3.0 5.0 1.0 7475 chr2L 12933853 intergenic not near genes chr2L 12937590 intergenic not near genes chr2L 12941328 intergenic not near genes chr2L_6_12935001 chr2L_12935001 RAL-879 134 chr2L 12933871 12933883 chr2L 12941315 12941346 blood 7 7450 2.0 2.0 2.0 2.3 7475 chr2L 12933871 intergenic not near genes chr2L 12937608 intergenic not near genes chr2L 12941346 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-879 135 chr2L 13231882 13231911 chr2L 13231993 13232022 5 111 1.0 2.5 1.8 1.8 140 chr2L 13231882 intergenic Prosalpha6T + chr2L 13231952 intergenic Prosalpha6T + chr2L 13232022 intergenic Prosalpha6T + chr2L_5_13230001 chr2L_13230001 RAL-879 136 chr2L 13761822 13761828 chr2L 13762908 13762939 Doc 5 1102 6.5 3.5 5.0 0.8 1117 chr2L 13761822 intron TM9SF4 + chr2L 13762380 intron TM9SF4 + chr2L 13762939 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-879 137 chr2L 13800176 13800203 chr2L 13800280 13800295 7 100 1.0 4.0 2.5 2.0 119 chr2L 13800176 intergenic not near genes chr2L 13800236 intergenic not near genes chr2L 13800295 intergenic not near genes chr2L_7_13800001 chr2L_13800001 RAL-879 138 chr2L 14173869 14173886 chr2L 14173950 14173970 8 83 3.0 4.5 3.8 1.7 101 chr2L 14173869 intron CG43333 - chr2L 14173920 intron CG43333 - chr2L 14173970 intron CG43333 - chr2L_8_14170001 chr2L_14170001 RAL-879 139 chr2L 14369146 14369156 chr2L 14369239 14369271 4 109 1.0 0.5 0.8 2.2 125 chr2L 14369146 intergenic not near genes chr2L 14369208 intergenic not near genes chr2L 14369271 intergenic not near genes chr2L_4_14365001 chr2L_14365001 RAL-879 140 chr2L 14564200 14564212 chr2L 14564276 14564288 4 73 3.0 3.0 3.0 1.0 88 chr2L 14564200 intergenic CG3473 - chr2L 14564244 intergenic not near genes chr2L 14564288 intergenic not near genes chr2L_4_14560001 chr2L_14560001 RAL-879 141 chr2L 14564217 14564229 chr2L 14564271 14564275 7 53 2.5 2.5 2.5 2.0 58 chr2L 14564217 intergenic CG3473 - chr2L 14564246 intergenic not near genes chr2L 14564275 intergenic not near genes chr2L_7_14560001 chr2L_14560001 RAL-879 142 chr2L 14611947 14611969 chr2L 14612026 14612034 4 74 2.0 8.0 5.0 0.7 87 chr2L 14611947 intron osp - chr2L 14611990 intron osp - chr2L 14612034 intron osp - chr2L_4_14610001 chr2L_14610001 RAL-879 143 chr2L 14642587 14642604 chr2L 14651737 14651752 roo 5 9156 0.5 3.0 1.8 1.8 9165 chr2L 14642587 intron osp - chr2L 14647170 intron osp - chr2L 14651752 intron osp - chr2L_5_14645001 chr2L_14645001 RAL-879 144 chr2L 14661643 14661648 chr2L 14661695 14661712 4 64 1.0 2.5 1.8 1.4 69 chr2L 14661643 intron osp - chr2L 14661678 intron osp - chr2L 14661712 intron osp - chr2L_4_14660001 chr2L_14660001 RAL-879 145 chr2L 14708469 14708494 chr2L 14708574 14708593 4 98 5.5 2.5 4.0 0.8 124 chr2L 14708469 intergenic not near genes chr2L 14708531 intergenic not near genes chr2L 14708593 intergenic not near genes chr2L_4_14705001 chr2L_14705001 RAL-879 146 chr2L 14803879 14803912 chr2L 14809082 14809111 copia 5 5199 2.0 3.5 2.8 1.3 5232 chr2L 14803879 intergenic not near genes chr2L 14806495 intergenic not near genes chr2L 14809111 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-879 147 chr2L 14930327 14930353 chr2L 14930402 14930424 8 73 2.5 1.5 2.0 2.7 97 chr2L 14930327 intron,3` UTR CG42313 -,CG3491 + chr2L 14930376 intron,3` UTR CG42313 -,CG3491 + chr2L 14930424 intron,3` UTR CG42313 -,CG3491 + chr2L_8_14930001 chr2L_14930001 RAL-879 148 chr2L 14984384 14984388 chr2L 14991985 14991990 opus 4 7602 3.5 2.5 3.0 1.0 7606 chr2L 14984384 intron mol - chr2L 14988187 intron mol - chr2L 14991990 intron mol - chr2L_4_14985001 chr2L_14985001 RAL-879 149 chr2L 15031554 15031587 chr2L 15031794 15031820 11 235 3.0 4.5 3.8 2.3 266 chr2L 15031554 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031687 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031820 intron GABA-B-R1 + chr2L_11_15030001 chr2L_15030001 RAL-879 150 chr2L 15187020 15187035 chr2L 15187205 15187216 6 191 1.0 3.0 2.0 2.0 196 chr2L 15187020 intron CG4168 - chr2L 15187118 intron CG4168 - chr2L 15187216 intron CG4168 - chr2L_6_15185001 chr2L_15185001 RAL-879 151 chr2L 15586420 15586441 chr2L 15593472 15593475 297 5 7046 2.0 1.0 1.5 2.0 7055 chr2L 15586420 intergenic not near genes chr2L 15589948 intergenic not near genes chr2L 15593475 intergenic not near genes chr2L_5_15585001 chr2L_15585001 RAL-879 152 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 13 145889 12.5 22.5 17.5 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_16140001 chr2L_16140001 RAL-879 153 chr2L 16098924 16098930 chr2L 16099010 16099018 5 86 2.5 1.0 1.8 1.8 94 chr2L 16098924 intergenic not near genes chr2L 16098971 intergenic not near genes chr2L 16099018 intergenic not near genes chr2L_5_16095001 chr2L_16095001 RAL-879 154 chr2L 16141171 16141179 chr2L 16146378 16146386 copia 4 5207 3.0 2.5 2.8 1.1 5215 chr2L 16141171 intergenic not near genes chr2L 16143778 intergenic not near genes chr2L 16146386 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-879 155 chr2L 16150697 16150725 chr2L 16150775 16150799 6 78 1.5 4.5 3.0 1.5 102 chr2L 16150697 intergenic not near genes chr2L 16150748 intergenic not near genes chr2L 16150799 intergenic not near genes chr2L_6_16150001 chr2L_16150001 RAL-879 156 chr2L 9084336 9084340 chr2L 16217660 16217660 5 7133322 15.5 22.5 19.0 0.2 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-879 157 chr2L 16071768 16071771 chr2L 16217660 16217660 copia 7 145889 12.5 22.5 17.5 0.4 145892 chr2L 16071768 intron beat-Ia + chr2L 16144714 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-879 158 chr2L 16229503 16229513 chr2L 16229969 16229978 4 464 3.5 1.5 2.5 1.1 475 chr2L 16229503 intergenic not near genes chr2L 16229740 intergenic not near genes chr2L 16229978 intergenic not near genes chr2L_4_16225001 chr2L_16225001 RAL-879 159 chr2L 16254905 16254917 chr2L 16255151 16255151 4 249 4.0 2.5 3.2 1.0 246 chr2L 16254905 intron PRL-1 - chr2L 16255028 intron PRL-1 - chr2L 16255151 intron PRL-1 - chr2L_4_16255001 chr2L_16255001 RAL-879 160 chr2L 16280255 16280286 chr2L 16281426 16281457 1360 8 1162 3.0 5.0 4.0 1.6 1202 chr2L 16280255 intron crp - chr2L 16280856 intron crp - chr2L 16281457 intron crp - chr2L_8_16280001 chr2L_16280001 RAL-879 161 chr2L 16762396 16762415 chr2L 16762472 16762496 10 77 2.5 4.5 3.5 2.2 100 chr2L 16762396 intergenic not near genes chr2L 16762446 intergenic not near genes chr2L 16762496 intergenic not near genes chr2L_10_16760001 chr2L_16760001 RAL-879 162 chr2L 16867029 16867039 chr2L 16867123 16867134 4 93 2.5 3.0 2.8 1.1 105 chr2L 16867029 intergenic not near genes chr2L 16867082 intergenic not near genes chr2L 16867134 intergenic not near genes chr2L_4_16865001 chr2L_16865001 RAL-879 163 chr2L 16934491 16934523 chr2L 16934838 16934870 4 341 2.5 1.5 2.0 1.3 379 chr2L 16934491 intergenic not near genes chr2L 16934680 intergenic not near genes chr2L 16934870 intergenic not near genes chr2L_4_16930001 chr2L_16930001 RAL-879 164 chr2L 17273195 17273227 chr2L 17277972 17278003 F-element 8 4775 2.5 2.5 2.5 2.3 4808 chr2L 17273195 intergenic not near genes chr2L 17275599 intergenic not near genes chr2L 17278003 intergenic not near genes chr2L_8_17275001 chr2L_17275001 RAL-879 165 chr2L 17327909 17327928 chr2L 17327995 17328014 8 85 6.5 5.0 5.8 1.2 105 chr2L 17327909 intergenic not near genes chr2L 17327962 intergenic not near genes chr2L 17328014 intergenic not near genes chr2L_8_17325001 chr2L_17325001 RAL-879 166 chr2L 17380465 17380483 chr2L 17380717 17380738 4 255 1.5 1.5 1.5 1.6 273 chr2L 17380465 intron Lrch - chr2L 17380602 intron Lrch - chr2L 17380738 intron Lrch - chr2L_4_17380001 chr2L_17380001 RAL-879 167 chr2L 17466426 17466457 chr2L 17466519 17466550 14 88 0.0 3.0 1.5 5.6 124 chr2L 17466426 intron BicD - chr2L 17466488 intron BicD - chr2L 17466550 intron BicD - chr2L_14_17465001 chr2L_17465001 RAL-879 168 chr2L 17595505 17595527 chr2L 17595583 17595605 7 75 3.0 4.0 3.5 1.6 100 chr2L 17595505 intron Sytalpha + chr2L 17595555 intron Sytalpha + chr2L 17595605 intron Sytalpha + chr2L_7_17595001 chr2L_17595001 RAL-879 169 chr2L 18020754 18020773 chr2L 18020839 18020859 7 86 0.5 6.5 3.5 1.6 105 chr2L 18020754 intron rdo + chr2L 18020806 intron rdo + chr2L 18020859 intron rdo + chr2L_7_18020001 chr2L_18020001 RAL-879 170 chr2L 18051878 18051908 chr2L 18061021 18061036 roo 7 9136 2.5 1.5 2.0 2.3 9158 chr2L 18051878 intron rdo + chr2L 18056457 intron rdo + chr2L 18061036 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-879 171 chr2L 18225792 18225828 chr2L 18226420 18226442 7 619 1.0 3.0 2.0 2.3 650 chr2L 18225792 intron CG42750 - chr2L 18226117 intron CG42750 - chr2L 18226442 intron CG42750 - chr2L_7_18225001 chr2L_18225001 RAL-879 172 chr2L 18344637 18344650 chr2L 18344710 18344717 6 80 2.5 4.0 3.2 1.4 80 chr2L 18344637 intron Fas3 + chr2L 18344677 intron Fas3 + chr2L 18344717 intron Fas3 + chr2L_6_18340001 chr2L_18340001 RAL-879 173 chr2L 18408028 18408057 chr2L 18412808 18412811 Doc 4 4770 2.5 1.0 1.8 1.4 4783 chr2L 18408028 intergenic not near genes chr2L 18410420 intergenic not near genes chr2L 18412811 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-879 174 chr2L 18790283 18790290 chr2L 18791111 18791139 11 829 19.0 22.5 20.8 0.5 856 chr2L 18790283 intron ham - chr2L 18790711 intron ham - chr2L 18791139 intron ham - chr2L_11_18790001 chr2L_18790001 RAL-879 175 chr2L 19121045 19121072 chr2L 19121120 19121123 6 63 1.5 2.0 1.8 2.1 78 chr2L 19121045 intergenic l(2)37Cc - chr2L 19121084 intergenic l(2)37Cc - chr2L 19121123 intergenic l(2)37Cc - chr2L_6_19120001 chr2L_19120001 RAL-879 176 chr2L 19182976 19183004 chr2L 19183055 19183059 7 75 1.5 3.0 2.2 2.2 83 chr2L 19182976 intergenic CR17567 -,CG42688 - chr2L 19183018 intergenic CR17567 -,CG42688 - chr2L 19183059 intergenic CR17567 -,CG42688 - chr2L_7_19180001 chr2L_19180001 RAL-879 177 chr2L 19183355 19183370 chr2L 19183435 19183450 4 80 1.0 2.5 1.8 1.4 95 chr2L 19183355 intron CR17567 - chr2L 19183402 3` UTR CR17567 - chr2L 19183450 3` UTR CR17567 - chr2L_4_19180001 chr2L_19180001 RAL-879 178 chr2L 19246108 19246137 chr2L 19246191 19246195 4 74 4.5 3.5 4.0 0.8 87 chr2L 19246108 intergenic not near genes chr2L 19246152 intergenic not near genes chr2L 19246195 intergenic not near genes chr2L_4_19245001 chr2L_19245001 RAL-879 179 chr2L 19486892 19486916 chr2L 19486959 19486984 4 73 0.5 2.5 1.5 1.6 92 chr2L 19486892 intergenic CG13084 + chr2L 19486938 intergenic CG13084 + chr2L 19486984 intergenic CG13084 + chr2L_4_19485001 chr2L_19485001 RAL-879 180 chr2L 19562544 19562558 chr2L 19562614 19562637 4 72 0.0 1.5 0.8 2.2 93 chr2L 19562544 intron Tep5 + chr2L 19562590 intron Tep5 + chr2L 19562637 exon Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-879 181 chr2L 19620112 19620131 chr2L 19621085 19621105 jockey 8 978 5.0 6.5 5.8 1.2 993 chr2L 19620112 intron Lar + chr2L 19620608 intron Lar + chr2L 19621105 intron Lar + chr2L_8_19620001 chr2L_19620001 RAL-879 182 chr2L 19703535 19703566 chr2L 19712671 19712702 roo 6 9132 4.5 1.5 3.0 1.5 9167 chr2L 19703535 intron Lar + chr2L 19708118 intron Lar + chr2L 19712702 intron Lar + chr2L_6_19705001 chr2L_19705001 RAL-879 183 chr2L 19791157 19791181 chr2L 19791245 19791264 6 86 4.5 7.5 6.0 0.9 107 chr2L 19791157 intron CdGAPr - chr2L 19791210 intron CdGAPr - chr2L 19791264 intron CdGAPr - chr2L_6_19790001 chr2L_19790001 RAL-879 184 chr2L 19856392 19856426 chr2L 19856637 19856657 6 234 2.5 5.0 3.8 1.2 265 chr2L 19856392 intron sick + chr2L 19856524 intron sick + chr2L 19856657 intron sick + chr2L_6_19855001 chr2L_19855001 RAL-879 185 chr2L 19871564 19871571 chr2L 19871627 19871641 4 70 3.0 2.0 2.5 1.1 77 chr2L 19871564 intron sick + chr2L 19871602 intron sick + chr2L 19871641 intron sick + chr2L_4_19870001 chr2L_19870001 RAL-879 186 chr2L 19994646 19994660 chr2L 19994825 19994840 6 184 1.5 4.5 3.0 1.5 194 chr2L 19994646 intron CG43861 - chr2L 19994743 intron CG43861 - chr2L 19994840 intron CG43861 - chr2L_6_19990001 chr2L_19990001 RAL-879 187 chr2L 20041444 20041463 chr2L 20041518 20041536 9 76 4.5 4.0 4.2 1.7 92 chr2L 20041444 intron sNPF + chr2L 20041490 intron sNPF + chr2L 20041536 intron sNPF + chr2L_9_20040001 chr2L_20040001 RAL-879 188 chr2L 20085466 20085497 chr2L 20085558 20085582 8 91 3.5 5.5 4.5 1.5 116 chr2L 20085466 intron neb + chr2L 20085524 intron neb + chr2L 20085582 intron neb + chr2L_8_20085001 chr2L_20085001 RAL-879 189 chr2L 20127487 20127516 chr2L 20127714 20127738 5 223 4.0 2.0 3.0 1.2 251 chr2L 20127487 intergenic not near genes chr2L 20127612 intergenic not near genes chr2L 20127738 intergenic not near genes chr2L_5_20125001 chr2L_20125001 RAL-879 190 chr2L 20310889 20310919 chr2L 20310969 20310998 4 76 0.5 4.5 2.5 1.1 109 chr2L 20310889 intergenic spir + chr2L 20310944 intergenic spir + chr2L 20310998 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-879 191 chr2L 20376076 20376098 chr2L 20376192 20376215 6 116 2.5 3.0 2.8 1.6 139 chr2L 20376076 intergenic not near genes chr2L 20376146 intergenic not near genes chr2L 20376215 intergenic not near genes chr2L_6_20375001 chr2L_20375001 RAL-879 192 chr2L 20597099 20597117 chr2L 20597166 20597171 4 59 2.0 6.0 4.0 0.8 72 chr2L 20597099 intron CR44909 - chr2L 20597135 intron CR44909 - chr2L 20597171 intron CR44909 - chr2L_4_20595001 chr2L_20595001 RAL-879 193 chr2L 20611245 20611265 chr2L 20611333 20611335 4 83 0.0 4.5 2.2 1.2 90 chr2L 20611245 intron CR44909 - chr2L 20611290 intron CR44909 - chr2L 20611335 intron CR44909 - chr2L_4_20610001 chr2L_20610001 RAL-879 194 chr2L 20715154 20715168 chr2L 20715377 20715378 6 224 3.5 2.5 3.0 1.5 224 chr2L 20715154 intergenic not near genes chr2L 20715266 intergenic not near genes chr2L 20715378 intergenic not near genes chr2L_6_20715001 chr2L_20715001 RAL-879 195 chr2L 20814829 20814856 chr2L 20817526 20817553 6 2699 28.5 8.5 18.5 0.3 2724 chr2L 20814829 exon CG33322 - chr2L 20816191 5` UTR CG33322 - chr2L 20817553 intergenic CheB38a -,CheB38b - chr2L_6_20815001 chr2L_20815001 RAL-879 196 chr2L 20821499 20821518 chr2L 20821647 20821666 5 145 3.0 2.5 2.8 1.3 167 chr2L 20821499 intergenic not near genes chr2L 20821582 intergenic not near genes chr2L 20821666 intergenic not near genes chr2L_5_20820001 chr2L_20820001 RAL-879 197 chr2L 20901471 20901489 chr2L 20902634 20902653 1360 5 1162 0.5 5.5 3.0 1.2 1182 chr2L 20901471 intron,intron CG43739 -,sky - chr2L 20902062 intron,intron CG43739 -,sky - chr2L 20902653 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 RAL-879 198 chr2L 21041136 21041166 chr2L 21049397 21049427 Tirant 7 8256 1.5 3.0 2.2 2.2 8291 chr2L 21041136 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049427 intron CG42238 - chr2L_7_21045001 chr2L_21045001 RAL-879 199 chr2L 21781865 21781897 chr2L 21781953 21781968 8 82 3.0 4.5 3.8 1.7 103 chr2L 21781865 intron CG31612 - chr2L 21781916 intron CG31612 - chr2L 21781968 intron CG31612 - chr2L_8_21780001 chr2L_21780001 RAL-879 200 chr2L 21806230 21806256 chr2L 21806333 21806345 6 100 2.0 0.5 1.2 2.7 115 chr2L 21806230 intergenic not near genes chr2L 21806288 intergenic not near genes chr2L 21806345 intergenic not near genes chr2L_6_21805001 chr2L_21805001 RAL-879 201 chr2L 21981685 21981699 chr2L 21990850 21990864 roo 4 9164 4.0 2.5 3.2 1.0 9179 chr2L 21981685 exon CG2528 - chr2L 21986274 intron CG2528 - chr2L 21990864 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-879 202 chr2L 22212149 22212163 chr2L 22212694 22212709 4 546 0.5 1.0 0.8 2.2 560 chr2L 22212149 intron Ir40a - chr2L 22212429 intron Ir40a - chr2L 22212709 intron Ir40a - chr2L_4_22210001 chr2L_22210001 RAL-879 203 chr2L 22258636 22258644 chr2L 22260740 22260768 G6 4 2112 3.0 3.0 3.0 1.0 2132 chr2L 22258636 intergenic Tif-IA + chr2L 22259702 intergenic not near genes chr2L 22260768 intergenic not near genes chr2L_4_22255001 chr2L_22255001 RAL-879 204 chr2L 22674067 22674090 chr2L 22674144 22674159 4 73 3.0 0.5 1.8 1.4 92 chr2L 22674067 intron CG40006 - chr2L 22674113 intron CG40006 - chr2L 22674159 intron CG40006 - chr2L_4_22670001 chr2L_22670001 RAL-879 205 chr2L 22679805 22679832 chr2L 22684564 22684583 F-element 9 4759 3.0 3.0 3.0 2.2 4778 chr2L 22679805 intron CG40006 - chr2L 22682194 intron CG40006 - chr2L 22684583 intron CG40006 - chr2L_9_22680001 chr2L_22680001 RAL-879 206 chr2L 22695056 22695078 chr2L 22695134 22695148 4 78 11.0 13.5 12.2 0.3 92 chr2L 22695056 intron CG40006 - chr2L 22695102 intron CG40006 - chr2L 22695148 intron CG40006 - chr2L_4_22695001 chr2L_22695001 RAL-879 207 chr2R 3292655 3292677 chr2R 3292730 3292737 4 72 7.5 6.5 7.0 0.5 82 chr2R 3292655 intergenic not near genes chr2R 3292696 intergenic not near genes chr2R 3292737 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-879 208 chr2R 4312952 4313124 chr2R 4313036 4313198 5 85 2.5 1.5 2.0 1.7 246 chr2R 4312952 intergenic not near genes chr2R 4313075 intergenic not near genes chr2R 4313198 intergenic not near genes chr2R_5_4310001 chr2R_4310001 RAL-879 209 chr2R 4518102 4518134 chr2R 4522238 4522274 9 4130 12.0 18.0 15.0 0.6 4172 chr2R 4518102 intergenic not near genes chr2R 4520188 intergenic not near genes chr2R 4522274 intergenic not near genes chr2R_9_4520001 chr2R_4520001 RAL-879 210 chr2R 4621316 4621345 chr2R 4621856 4621864 12 532 3.0 1.5 2.2 3.8 548 chr2R 4621316 3` UTR CR44101 - chr2R 4621590 3` UTR CR44101 - chr2R 4621864 3` UTR CR44101 - chr2R_12_4620001 chr2R_4620001 RAL-879 211 chr2R 4622968 4622986 chr2R 4624114 4624141 1360 6 1148 4.5 4.0 4.2 1.2 1173 chr2R 4622968 intergenic CR44101 - chr2R 4623554 intergenic not near genes chr2R 4624141 intergenic not near genes chr2R_6_4620001 chr2R_4620001 RAL-879 212 chr2R 4624647 4624669 chr2R 4626550 4626560 Bica 7 1902 5.5 3.5 4.5 1.3 1913 chr2R 4624647 intergenic not near genes chr2R 4625604 intergenic not near genes chr2R 4626560 intergenic not near genes chr2R_7_4625001 chr2R_4625001 RAL-879 213 chr2R 4838874 4838904 chr2R 4840397 4840406 transib2 6 1519 2.0 3.5 2.8 1.6 1532 chr2R 4838874 intergenic not near genes chr2R 4839640 intergenic not near genes chr2R 4840406 intergenic not near genes chr2R_6_4835001 chr2R_4835001 RAL-879 214 chr2R 4933373 4933392 chr2R 4933921 4933956 8 557 1.0 3.0 2.0 2.7 583 chr2R 4933373 intron Ir41a + chr2R 4933664 intron Ir41a + chr2R 4933956 intron Ir41a + chr2R_8_4930001 chr2R_4930001 RAL-879 215 chr2R 5664294 5664315 chr2R 5664360 5664395 9 78 2.0 2.5 2.2 2.8 101 chr2R 5664294 5` UTR CR45472 + chr2R 5664344 intron CR45472 + chr2R 5664395 intron CR45472 + chr2R_9_5660001 chr2R_5660001 RAL-879 216 chr2R 5861303 5861321 chr2R 5861409 5861442 7 110 2.5 4.0 3.2 1.7 139 chr2R 5861303 intergenic dpr12 + chr2R 5861372 intergenic not near genes chr2R 5861442 intergenic not near genes chr2R_7_5860001 chr2R_5860001 RAL-879 217 chr2R 5869288 5869300 chr2R 5874364 5874376 flea 6 5076 6.0 5.0 5.5 0.9 5088 chr2R 5869288 intergenic not near genes chr2R 5871832 intergenic not near genes chr2R 5874376 intergenic not near genes chr2R_6_5870001 chr2R_5870001 RAL-879 218 chr2R 5876884 5876900 chr2R 5876972 5876985 8 93 1.0 2.5 1.8 2.9 101 chr2R 5876884 intergenic not near genes chr2R 5876934 intergenic not near genes chr2R 5876985 intergenic not near genes chr2R_8_5875001 chr2R_5875001 RAL-879 219 chr2R 5878942 5878955 chr2R 5879003 5879009 5 70 2.0 0.5 1.2 2.3 67 chr2R 5878942 intergenic CG44438 - chr2R 5878976 intergenic CG44438 - chr2R 5879009 intergenic CG44438 - chr2R_5_5875001 chr2R_5875001 RAL-879 220 chr2R 6096724 6096750 chr2R 6101917 6101939 BS 5 5191 6.5 4.5 5.5 0.8 5215 chr2R 6096724 intron EcR - chr2R 6099332 intron EcR - chr2R 6101939 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-879 221 chr2R 6129325 6129353 chr2R 6129403 6129431 6 78 1.5 1.5 1.5 2.4 106 chr2R 6129325 intron EcR - chr2R 6129378 intron EcR - chr2R 6129431 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-879 222 chr2R 6168197 6168228 chr2R 6168279 6168310 5 80 1.5 0.0 0.8 2.8 113 chr2R 6168197 intron EcR - chr2R 6168254 intron EcR - chr2R 6168310 intron EcR - chr2R_5_6165001 chr2R_6165001 RAL-879 223 chr2R 6541088 6541106 chr2R 6541164 6541182 8 75 0.0 6.0 3.0 2.0 94 chr2R 6541088 intron jing + chr2R 6541135 intron jing + chr2R 6541182 intron jing + chr2R_8_6540001 chr2R_6540001 RAL-879 224 chr2R 6552001 6552024 chr2R 6552095 6552125 5 93 2.0 3.0 2.5 1.4 124 chr2R 6552001 intron jing + chr2R 6552063 intron jing + chr2R 6552125 intron jing + chr2R_5_6550001 chr2R_6550001 RAL-879 225 chr2R 6633209 6633230 chr2R 6633274 6633307 4 73 1.0 0.0 0.5 2.7 98 chr2R 6633209 intergenic Vha16-1 -,Trap1 - chr2R 6633258 intergenic Vha16-1 -,Trap1 - chr2R 6633307 intergenic Vha16-1 -,Trap1 - chr2R_4_6630001 chr2R_6630001 RAL-879 226 chr2R 6646800 6646825 chr2R 6647071 6647098 5 267 2.0 1.5 1.8 1.8 298 chr2R 6646800 intergenic not near genes chr2R 6646949 intergenic not near genes chr2R 6647098 intergenic not near genes chr2R_5_6645001 chr2R_6645001 RAL-879 227 chr2R 6846305 6846323 chr2R 6846637 6846652 5 328 1.0 4.5 2.8 1.3 347 chr2R 6846305 intergenic not near genes chr2R 6846478 intergenic not near genes chr2R 6846652 intergenic not near genes chr2R_5_6845001 chr2R_6845001 RAL-879 228 chr2R 6857098 6857115 chr2R 6857201 6857220 8 106 2.0 3.5 2.8 2.1 122 chr2R 6857098 intergenic not near genes chr2R 6857159 intergenic not near genes chr2R 6857220 intergenic not near genes chr2R_8_6855001 chr2R_6855001 RAL-879 229 chr2R 6962450 6962476 chr2R 6962807 6962808 9 348 3.0 2.5 2.8 2.4 358 chr2R 6962450 intron,intron mim -,CheB42c - chr2R 6962629 intron,intron mim -,CheB42c - chr2R 6962808 intron,intron mim -,CheB42c - chr2R_9_6960001 chr2R_6960001 RAL-879 230 chr2R 7113953 7113969 chr2R 7114099 7114113 7 153 5.0 4.5 4.8 1.2 160 chr2R 7113953 intron esn + chr2R 7114033 intron esn + chr2R 7114113 intron esn + chr2R_7_7110001 chr2R_7110001 RAL-879 231 chr2R 7235825 7235837 chr2R 7240916 7240921 jockey 4 5087 6.0 3.5 4.8 0.7 5096 chr2R 7235825 intergenic not near genes chr2R 7238373 intergenic not near genes chr2R 7240921 intergenic not near genes chr2R_4_7235001 chr2R_7235001 RAL-879 232 chr2R 7235841 7235852 chr2R 7240913 7240944 jockey 6 5088 4.0 2.5 3.2 1.4 5103 chr2R 7235841 intergenic not near genes chr2R 7238392 intergenic not near genes chr2R 7240944 intergenic not near genes chr2R_6_7235001 chr2R_7235001 RAL-879 233 chr2R 7306564 7306594 chr2R 7306642 7306672 9 74 3.0 3.5 3.2 2.1 108 chr2R 7306564 intergenic not near genes chr2R 7306618 intergenic not near genes chr2R 7306672 intergenic not near genes chr2R_9_7305001 chr2R_7305001 RAL-879 234 chr2R 7353403 7353419 chr2R 7353492 7353525 4 96 2.0 0.5 1.2 1.8 122 chr2R 7353403 intron Dscam1 - chr2R 7353464 intron Dscam1 - chr2R 7353525 intron Dscam1 - chr2R_4_7350001 chr2R_7350001 RAL-879 235 chr2R 7371052 7371064 chr2R 7371127 7371157 8 86 0.0 2.0 1.0 4.0 105 chr2R 7371052 intron Dscam1 - chr2R 7371104 intron Dscam1 - chr2R 7371157 intron Dscam1 - chr2R_8_7370001 chr2R_7370001 RAL-879 236 chr2R 7405407 7405422 chr2R 7405660 7405693 6 258 1.0 1.0 1.0 3.0 286 chr2R 7405407 intron Eaf - chr2R 7405550 intron Eaf - chr2R 7405693 intron Eaf - chr2R_6_7405001 chr2R_7405001 RAL-879 237 chr2R 7551693 7551706 chr2R 7551784 7551796 5 91 5.5 5.0 5.2 0.8 103 chr2R 7551693 intron Corin + chr2R 7551744 intron Corin + chr2R 7551796 intron Corin + chr2R_5_7550001 chr2R_7550001 RAL-879 238 chr2R 7551716 7551718 chr2R 7551776 7551809 4 74 2.5 4.5 3.5 0.9 93 chr2R 7551716 intron Corin + chr2R 7551762 intron Corin + chr2R 7551809 intron Corin + chr2R_4_7550001 chr2R_7550001 RAL-879 239 chr2R 7760295 7760307 chr2R 7760431 7760433 5 133 2.0 7.5 4.8 0.9 138 chr2R 7760295 intron,intron CG30497 -,CG45093 - chr2R 7760364 intron,intron CG30497 -,CG45093 - chr2R 7760433 intron,intron CG30497 -,CG45093 - chr2R_5_7760001 chr2R_7760001 RAL-879 240 chr2R 7842214 7842227 chr2R 7842283 7842306 6 74 3.5 3.5 3.5 1.3 92 chr2R 7842214 intron Dgk - chr2R 7842260 intron Dgk - chr2R 7842306 intron Dgk - chr2R_6_7840001 chr2R_7840001 RAL-879 241 chr2R 7869196 7869219 chr2R 7873974 7873989 Doc 4 4775 4.0 2.0 3.0 1.0 4793 chr2R 7869196 intron Dgk - chr2R 7871592 intron Dgk - chr2R 7873989 intron Dgk - chr2R_4_7870001 chr2R_7870001 RAL-879 242 chr2R 7916425 7916458 chr2R 7916510 7916543 5 77 4.5 4.5 4.5 0.9 118 chr2R 7916425 5` UTR CG12159 - chr2R 7916484 intergenic CG12159 -,Cul1 + chr2R 7916543 intergenic CG12159 -,Cul1 + chr2R_5_7915001 chr2R_7915001 RAL-879 243 chr2R 8067068 8067098 chr2R 8067147 8067175 6 81 1.0 2.0 1.5 2.4 107 chr2R 8067068 intron CG17977 - chr2R 8067122 intron CG17977 - chr2R 8067175 exon CG17977 - chr2R_6_8065001 chr2R_8065001 RAL-879 244 chr2R 8076683 8076710 chr2R 8076757 8076789 7 76 2.0 0.5 1.2 3.2 106 chr2R 8076683 intron lig + chr2R 8076736 intron lig + chr2R 8076789 intron lig + chr2R_7_8075001 chr2R_8075001 RAL-879 245 chr2R 8089263 8089277 chr2R 8089344 8089363 6 83 2.5 2.5 2.5 1.7 100 chr2R 8089263 3` UTR sut2 + chr2R 8089313 intergenic sut2 +,sut3 + chr2R 8089363 intergenic sut2 +,sut3 + chr2R_6_8085001 chr2R_8085001 RAL-879 246 chr2R 8209062 8209087 chr2R 8209139 8209152 7 78 3.5 0.0 1.8 2.5 90 chr2R 8209062 intron LRP1 + chr2R 8209107 intron LRP1 + chr2R 8209152 intron LRP1 + chr2R_7_8205001 chr2R_8205001 RAL-879 247 chr2R 8242006 8242038 chr2R 8242095 8242101 8 80 2.5 4.0 3.2 1.9 95 chr2R 8242006 3` UTR CR44276 - chr2R 8242054 intergenic CR44276 -,CR44445 - chr2R 8242101 intergenic CR44276 -,CR44445 - chr2R_8_8240001 chr2R_8240001 RAL-879 248 chr2R 8330880 8330886 chr2R 8331361 8331371 roo 4 484 3.5 3.5 3.5 0.9 491 chr2R 8330880 intron pdm3 + chr2R 8331126 intron pdm3 + chr2R 8331371 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-879 249 chr2R 8379791 8379816 chr2R 8379885 8379903 4 90 7.5 4.0 5.8 0.6 112 chr2R 8379791 intron pdm3 + chr2R 8379847 intron pdm3 + chr2R 8379903 intron pdm3 + chr2R_4_8375001 chr2R_8375001 RAL-879 250 chr2R 8403441 8403450 chr2R 8403524 8403532 4 82 2.0 1.0 1.5 1.6 91 chr2R 8403441 intron CG2121 - chr2R 8403486 intron CG2121 - chr2R 8403532 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-879 251 chr2R 8615773 8615809 chr2R 8615885 8615922 5 110 1.0 0.5 0.8 2.8 149 chr2R 8615773 intron Cirl + chr2R 8615848 intron Cirl + chr2R 8615922 5` UTR Cirl + chr2R_5_8615001 chr2R_8615001 RAL-879 252 chr2R 8658253 8658265 chr2R 8658305 8658340 5 60 1.0 0.5 0.8 2.8 87 chr2R 8658253 intron ptc + chr2R 8658296 intron ptc + chr2R 8658340 intron ptc + chr2R_5_8655001 chr2R_8655001 RAL-879 253 chr2R 8722764 8722792 chr2R 8723005 8723033 pogo 5 236 2.0 1.0 1.5 2.0 269 chr2R 8722764 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723033 intron CG14767 - chr2R_5_8720001 chr2R_8720001 RAL-879 254 chr2R 9212698 9212711 chr2R 9213183 9213197 roo 4 486 5.0 5.0 5.0 0.7 499 chr2R 9212698 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213197 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-879 255 chr2R 9330886 9330912 chr2R 9330979 9331005 5 93 0.0 1.0 0.5 3.3 119 chr2R 9330886 intron,intron CG13739 -,CG13954 - chr2R 9330946 intron,intron CG13739 -,CG13954 - chr2R 9331005 intron,intron CG13739 -,CG13954 - chr2R_5_9330001 chr2R_9330001 RAL-879 256 chr2R 9347718 9347722 chr2R 9347794 9347831 4 93 1.5 1.0 1.2 1.8 113 chr2R 9347718 intron,intron,3` UTR CG13739 -,CG13954 -,Or45a + chr2R 9347774 intron,intron,3` UTR CG13739 -,CG13954 -,Or45a + chr2R 9347831 intron,intron,3` UTR CG13739 -,CG13954 -,Or45a + chr2R_4_9345001 chr2R_9345001 RAL-879 257 chr2R 9561826 9561850 chr2R 9561914 9561933 6 87 0.5 1.5 1.0 3.0 107 chr2R 9561826 3` UTR,intron CR45281 -,CG1809 + chr2R 9561880 3` UTR,intron CR45281 -,CG1809 + chr2R 9561933 3` UTR,intron CR45281 -,CG1809 + chr2R_6_9560001 chr2R_9560001 RAL-879 258 chr2R 9687254 9687268 chr2R 9687322 9687350 4 78 2.0 1.5 1.8 1.4 96 chr2R 9687254 intergenic not near genes chr2R 9687302 intergenic not near genes chr2R 9687350 intergenic not near genes chr2R_4_9685001 chr2R_9685001 RAL-879 259 chr2R 9945454 9945473 chr2R 9945630 9945640 BS 6 179 4.0 2.5 3.2 1.4 186 chr2R 9945454 intron Mef2 - chr2R 9945547 intron Mef2 - chr2R 9945640 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-879 260 chr2R 9975920 9975945 chr2R 9976032 9976055 5 110 4.0 1.0 2.5 1.4 135 chr2R 9975920 intergenic not near genes chr2R 9975988 intergenic not near genes chr2R 9976055 intergenic not near genes chr2R_5_9975001 chr2R_9975001 RAL-879 261 chr2R 10005846 10005884 chr2R 10007011 10007029 1360 11 1159 5.0 5.5 5.2 1.8 1183 chr2R 10005846 intron Pka-R2 - chr2R 10006438 intron Pka-R2 - chr2R 10007029 intron Pka-R2 - chr2R_11_10005001 chr2R_10005001 RAL-879 262 chr2R 10023162 10023194 chr2R 10023244 10023272 8 79 0.5 1.0 0.8 4.4 110 chr2R 10023162 intron Pka-R2 - chr2R 10023217 intron Pka-R2 - chr2R 10023272 intron Pka-R2 - chr2R_8_10020001 chr2R_10020001 RAL-879 263 chr2R 10132206 10132214 chr2R 10132270 10132294 5 72 1.5 2.0 1.8 1.8 88 chr2R 10132206 intron gem + chr2R 10132250 intron gem + chr2R 10132294 intron gem + chr2R_5_10130001 chr2R_10130001 RAL-879 264 chr2R 10417407 10417410 chr2R 10417532 10417553 4 129 7.0 2.5 4.8 0.7 146 chr2R 10417407 intergenic CG42732 - chr2R 10417480 intergenic CG42732 - chr2R 10417553 intergenic not near genes chr2R_4_10415001 chr2R_10415001 RAL-879 265 chr2R 10469020 10469054 chr2R 10469146 10469157 10 118 3.0 2.0 2.5 2.9 137 chr2R 10469020 intron CG11777 + chr2R 10469088 intron CG11777 + chr2R 10469157 intron CG11777 + chr2R_10_10465001 chr2R_10465001 RAL-879 266 chr2R 10644074 10644087 chr2R 10644152 10644165 4 78 0.0 1.5 0.8 2.2 91 chr2R 10644074 intron Git - chr2R 10644120 intron Git - chr2R 10644165 intron Git - chr2R_4_10640001 chr2R_10640001 RAL-879 267 chr2R 10922783 10922791 chr2R 10922869 10922877 4 85 0.0 1.5 0.8 2.2 94 chr2R 10922783 intergenic not near genes chr2R 10922830 intergenic not near genes chr2R 10922877 intergenic not near genes chr2R_4_10920001 chr2R_10920001 RAL-879 268 chr2R 11009828 11009844 chr2R 11018988 11018993 roo 4 9160 4.0 4.5 4.2 0.8 9165 chr2R 11009828 intron luna - chr2R 11014410 intron luna - chr2R 11018993 intron luna - chr2R_4_11010001 chr2R_11010001 RAL-879 269 chr2R 11119715 11119729 chr2R 11119834 11119858 5 122 0.5 0.5 0.5 3.3 143 chr2R 11119715 3` UTR Cyp12d1-p - chr2R 11119786 3` UTR Cyp12d1-p - chr2R 11119858 3` UTR Cyp12d1-p - chr2R_5_11115001 chr2R_11115001 RAL-879 270 chr2R 11207821 11207852 chr2R 11208007 11208016 BS 9 182 6.0 3.5 4.8 1.6 195 chr2R 11207821 intron shn + chr2R 11207918 intron shn + chr2R 11208016 intron shn + chr2R_9_11205001 chr2R_11205001 RAL-879 271 chr2R 11415533 11415549 chr2R 11418681 11418698 opus 4 3146 3.5 10.0 6.8 0.5 3165 chr2R 11415533 intron Drip - chr2R 11417116 intron Drip - chr2R 11418698 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-879 272 chr2R 11472650 11472679 chr2R 11473847 11473849 pogo 6 1189 4.5 1.0 2.8 1.6 1199 chr2R 11472650 intergenic not near genes chr2R 11473250 intergenic not near genes chr2R 11473849 intergenic not near genes chr2R_6_11470001 chr2R_11470001 RAL-879 273 chr2R 11494323 11494619 chr2R 11494405 11494694 8 83 3.5 1.5 2.5 2.3 371 chr2R 11494323 intron inv + chr2R 11494508 intron inv + chr2R 11494694 intron inv + chr2R_8_11490001 chr2R_11490001 RAL-879 274 chr2R 11494629 11494634 chr2R 11494694 11494723 4 74 1.5 2.5 2.0 1.3 94 chr2R 11494629 intron inv + chr2R 11494676 intron inv + chr2R 11494723 intron inv + chr2R_4_11490001 chr2R_11490001 RAL-879 275 chr2R 11667390 11667396 chr2R 11667474 11667490 5 92 1.5 1.5 1.5 2.0 100 chr2R 11667390 intron,intron Roc2 -,Tret1-1 + chr2R 11667440 intron,intron Roc2 -,Tret1-1 + chr2R 11667490 intron,intron Roc2 -,Tret1-1 + chr2R_5_11665001 chr2R_11665001 RAL-879 276 chr2R 12124834 12124852 chr2R 12124913 12124918 5 79 1.5 1.0 1.2 2.3 84 chr2R 12124834 intergenic not near genes chr2R 12124876 intergenic not near genes chr2R 12124918 intergenic not near genes chr2R_5_12120001 chr2R_12120001 RAL-879 277 chr2R 12187473 12187482 chr2R 12190090 12190124 24 2627 81.5 71.0 76.2 0.3 2651 chr2R 12187473 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_24_12185001 chr2R_12185001 RAL-879 278 chr2R 12363395 12363414 chr2R 12363827 12363846 7 431 4.5 7.0 5.8 1.0 451 chr2R 12363395 intergenic CG30043 + chr2R 12363620 intergenic CG30043 + chr2R 12363846 intergenic not near genes chr2R_7_12360001 chr2R_12360001 RAL-879 279 chr2R 12501712 12501726 chr2R 12503853 12503863 Rt1c 5 2142 0.5 6.5 3.5 1.1 2151 chr2R 12501712 intron fdl - chr2R 12502788 intron fdl - chr2R 12503863 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-879 280 chr2R 12555443 12555476 chr2R 12556145 12556156 8 694 5.0 2.5 3.8 1.7 713 chr2R 12555443 intron fra + chr2R 12555800 intron fra + chr2R 12556156 intron fra + chr2R_8_12555001 chr2R_12555001 RAL-879 281 chr2R 12627487 12627500 chr2R 12627579 12627586 4 90 0.5 4.0 2.2 1.2 99 chr2R 12627487 intron CG17760 + chr2R 12627536 intron CG17760 + chr2R 12627586 intron CG17760 + chr2R_4_12625001 chr2R_12625001 RAL-879 282 chr2R 12789306 12789326 chr2R 12797656 12797687 roo 4 8349 3.5 3.0 3.2 1.0 8381 chr2R 12789306 intron,3` UTR sca +,CR45137 - chr2R 12793496 intron,intron sca +,CR45137 - chr2R 12797687 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-879 283 chr2R 12834167 12834176 chr2R 12834249 12834259 4 82 2.0 2.5 2.2 1.2 92 chr2R 12834167 intergenic not near genes chr2R 12834213 intergenic not near genes chr2R 12834259 intergenic not near genes chr2R_4_12830001 chr2R_12830001 RAL-879 284 chr2R 12951680 12951693 chr2R 12951755 12951774 4 78 1.0 3.5 2.2 1.2 94 chr2R 12951680 intron,intron CG44251 -,CG44250 - chr2R 12951727 intron,intron CG44251 -,CG44250 - chr2R 12951774 intron,intron CG44251 -,CG44250 - chr2R_4_12950001 chr2R_12950001 RAL-879 285 chr2R 13136833 13136858 chr2R 13141631 13141639 Doc 9 4795 3.5 3.0 3.2 2.1 4806 chr2R 13136833 exon Cap-G + chr2R 13139236 intron Cap-G + chr2R 13141639 intron Cap-G + chr2R_9_13135001 chr2R_13135001 RAL-879 286 chr2R 13243390 13243402 chr2R 13243463 13243483 5 73 2.0 3.5 2.8 1.3 93 chr2R 13243390 intergenic not near genes chr2R 13243436 intergenic not near genes chr2R 13243483 intergenic not near genes chr2R_5_13240001 chr2R_13240001 RAL-879 287 chr2R 13348992 13349006 chr2R 13349070 13349087 4 77 0.5 0.0 0.2 3.3 95 chr2R 13348992 intron CR44206 - chr2R 13349040 intron CR44206 - chr2R 13349087 intron CR44206 - chr2R_4_13345001 chr2R_13345001 RAL-879 288 chr2R 13431488 13431515 chr2R 13431567 13431594 5 72 2.0 1.5 1.8 1.8 106 chr2R 13431488 intron CG42321 - chr2R 13431541 intron CG42321 - chr2R 13431594 intron CG42321 - chr2R_5_13430001 chr2R_13430001 RAL-879 289 chr2R 13432943 13432969 chr2R 13433019 13433045 4 70 1.5 1.5 1.5 1.6 102 chr2R 13432943 intron CG42321 - chr2R 13432994 intron CG42321 - chr2R 13433045 intron,5` UTR CG42321 -,CG30065 + chr2R_4_13430001 chr2R_13430001 RAL-879 290 chr2R 13439109 13439226 chr2R 13439224 13439291 6 104 0.0 0.0 0.0 6.0 182 chr2R 13439109 intergenic CG42321 -,cnn - chr2R 13439200 intergenic cnn -,CG42321 - chr2R 13439291 intergenic cnn -,CG42321 - chr2R_6_13435001 chr2R_13435001 RAL-879 291 chr2R 13566258 13566280 chr2R 13566338 13566360 4 79 6.0 0.0 3.0 1.0 102 chr2R 13566258 intergenic not near genes chr2R 13566309 intergenic not near genes chr2R 13566360 intergenic not near genes chr2R_4_13565001 chr2R_13565001 RAL-879 292 chr2R 13632310 13632332 chr2R 13632398 13632416 4 87 6.0 5.5 5.8 0.6 106 chr2R 13632310 intron fas + chr2R 13632363 intron fas + chr2R 13632416 intron fas + chr2R_4_13630001 chr2R_13630001 RAL-879 293 chr2R 13694643 13694655 chr2R 13694703 13694726 4 67 0.5 1.0 0.8 2.2 83 chr2R 13694643 intron fas + chr2R 13694684 intron fas + chr2R 13694726 intron fas + chr2R_4_13690001 chr2R_13690001 RAL-879 294 chr2R 13798940 13798959 chr2R 13799012 13799026 4 72 1.5 2.0 1.8 1.4 86 chr2R 13798940 intron Cpr50Cb + chr2R 13798983 intron Cpr50Cb + chr2R 13799026 intron Cpr50Cb + chr2R_4_13795001 chr2R_13795001 RAL-879 295 chr2R 13925860 13925872 chr2R 13926025 13926048 6 172 3.5 1.5 2.5 1.7 188 chr2R 13925860 intron shot - chr2R 13925954 intron shot - chr2R 13926048 intron shot - chr2R_6_13925001 chr2R_13925001 RAL-879 296 chr2R 13993279 13993308 chr2R 13993358 13993367 4 69 3.5 2.5 3.0 1.0 88 chr2R 13993279 intron mam + chr2R 13993323 intron mam + chr2R 13993367 intron mam + chr2R_4_13990001 chr2R_13990001 RAL-879 297 chr2R 14393873 14393893 chr2R 14393957 14393963 6 81 3.0 5.0 4.0 1.2 90 chr2R 14393873 intergenic not near genes chr2R 14393918 intergenic not near genes chr2R 14393963 intergenic not near genes chr2R_6_14390001 chr2R_14390001 RAL-879 298 chr2R 14497390 14497416 chr2R 14498556 14498580 1360 4 1164 3.0 1.5 2.2 1.2 1190 chr2R 14497390 3` UTR Cpsf160 - chr2R 14497985 intron Cpsf160 - chr2R 14498580 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-879 299 chr2R 14539156 14539184 chr2R 14539385 14539413 5 226 1.0 1.0 1.0 2.5 257 chr2R 14539156 intron ttv + chr2R 14539284 intron ttv + chr2R 14539413 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-879 300 chr2R 14565558 14565589 chr2R 14565635 14565666 6 74 4.5 0.5 2.5 1.7 108 chr2R 14565558 intron ttv + chr2R 14565612 intron ttv + chr2R 14565666 intron ttv + chr2R_6_14565001 chr2R_14565001 RAL-879 301 chr2R 14637038 14637046 chr2R 14637139 14637147 4 101 1.0 0.5 0.8 2.2 109 chr2R 14637038 intergenic not near genes chr2R 14637092 intergenic not near genes chr2R 14637147 intergenic not near genes chr2R_4_14635001 chr2R_14635001 RAL-879 302 chr2R 14855059 14855065 chr2R 14855128 14855138 4 81 3.5 2.0 2.8 1.1 79 chr2R 14855059 intergenic Ciao1 -,HPS1 + chr2R 14855098 intergenic Ciao1 -,HPS1 + chr2R 14855138 intergenic Ciao1 -,HPS1 + chr2R_4_14855001 chr2R_14855001 RAL-879 303 chr2R 14889208 14889236 chr2R 14897816 14897828 Max-element 5 8603 2.5 0.5 1.5 2.0 8620 chr2R 14889208 intergenic Cyp6a8 - chr2R 14893518 intergenic not near genes chr2R 14897828 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-879 304 chr2R 14911714 14911725 chr2R 14911836 14911845 5 122 3.0 4.0 3.5 1.1 131 chr2R 14911714 intron CG10249 - chr2R 14911780 intron CG10249 - chr2R 14911845 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-879 305 chr2R 14979769 14979792 chr2R 14979840 14979859 5 73 3.0 1.5 2.2 1.6 90 chr2R 14979769 3` UTR ckn + chr2R 14979814 3` UTR ckn + chr2R 14979859 3` UTR ckn + chr2R_5_14975001 chr2R_14975001 RAL-879 306 chr2R 15015461 15015478 chr2R 15022885 15022902 mdg1 7 7423 4.0 4.0 4.0 1.4 7441 chr2R 15015461 intron hbs + chr2R 15019182 intron hbs + chr2R 15022902 intron hbs + chr2R_7_15015001 chr2R_15015001 RAL-879 307 chr2R 15065627 15065648 chr2R 15065693 15065699 5 64 2.5 3.0 2.8 1.3 72 chr2R 15065627 intergenic not near genes chr2R 15065663 intergenic not near genes chr2R 15065699 intergenic not near genes chr2R_5_15065001 chr2R_15065001 RAL-879 308 chr2R 15072879 15072900 chr2R 15073005 15073027 4 124 5.0 2.0 3.5 0.9 148 chr2R 15072879 intergenic not near genes chr2R 15072953 intergenic not near genes chr2R 15073027 intergenic not near genes chr2R_4_15070001 chr2R_15070001 RAL-879 309 chr2R 15095393 15095399 chr2R 15095440 15095475 6 65 5.0 3.5 4.2 1.2 82 chr2R 15095393 intergenic not near genes chr2R 15095434 intergenic not near genes chr2R 15095475 intergenic not near genes chr2R_6_15095001 chr2R_15095001 RAL-879 310 chr2R 15119322 15119351 chr2R 15127798 15127798 Tirant 5 8469 2.5 4.5 3.5 1.1 8476 chr2R 15119322 intron chn + chr2R 15123560 intron chn + chr2R 15127798 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-879 311 chr2R 15235064 15235086 chr2R 15235178 15235184 5 101 4.0 1.5 2.8 1.3 120 chr2R 15235064 intron Fs - chr2R 15235124 intron Fs - chr2R 15235184 intron Fs - chr2R_5_15235001 chr2R_15235001 RAL-879 312 chr2R 15293634 15293641 chr2R 15293721 15293733 5 90 4.5 5.5 5.0 0.8 99 chr2R 15293634 intron Trpm - chr2R 15293684 intron Trpm - chr2R 15293733 intron Trpm - chr2R_5_15290001 chr2R_15290001 RAL-879 313 chr2R 15330203 15330241 chr2R 15330337 15330362 8 130 1.0 0.5 0.8 4.4 159 chr2R 15330203 intergenic CR44371 - chr2R 15330282 intergenic CR44371 - chr2R 15330362 intergenic CR44371 - chr2R_8_15330001 chr2R_15330001 RAL-879 314 chr2R 15655986 15656002 chr2R 15656066 15656082 4 77 2.5 2.5 2.5 1.1 96 chr2R 15655986 intron CG42524 + chr2R 15656034 intron CG42524 + chr2R 15656082 intron CG42524 + chr2R_4_15655001 chr2R_15655001 RAL-879 315 chr2R 15700239 15700267 chr2R 15700351 15700370 5 105 2.0 4.0 3.0 1.2 131 chr2R 15700239 intron,5` UTR CG30080 -,CG42662 - chr2R 15700304 intron,5` UTR CG30080 -,CG42662 - chr2R 15700370 intron,5` UTR CG30080 -,CG42662 - chr2R_5_15700001 chr2R_15700001 RAL-879 316 chr2R 15833521 15833556 chr2R 15833608 15833614 5 77 0.0 1.5 0.8 2.8 93 chr2R 15833521 intron,intron tun +,Poxn - chr2R 15833568 intron,intron tun +,Poxn - chr2R 15833614 intron,intron tun +,Poxn - chr2R_5_15830001 chr2R_15830001 RAL-879 317 chr2R 16214966 16214988 chr2R 16215589 16215602 4 622 3.0 1.0 2.0 1.3 636 chr2R 16214966 intron mrj - chr2R 16215284 intron mrj - chr2R 16215602 intron mrj - chr2R_4_16215001 chr2R_16215001 RAL-879 318 chr2R 16388342 16388363 chr2R 16388791 16388793 4 444 3.5 4.0 3.8 0.8 451 chr2R 16388342 intron Sema-2b + chr2R 16388568 intron Sema-2b + chr2R 16388793 intron Sema-2b + chr2R_4_16385001 chr2R_16385001 RAL-879 319 chr2R 16410761 16410768 chr2R 16410840 16410847 4 79 5.5 0.0 2.8 1.1 86 chr2R 16410761 intron Sema-2b + chr2R 16410804 intron Sema-2b + chr2R 16410847 intron Sema-2b + chr2R_4_16410001 chr2R_16410001 RAL-879 320 chr2R 16410769 16410790 chr2R 16410839 16410841 7 71 1.5 0.0 0.8 3.9 72 chr2R 16410769 intron Sema-2b + chr2R 16410805 intron Sema-2b + chr2R 16410841 intron Sema-2b + chr2R_7_16410001 chr2R_16410001 RAL-879 321 chr2R 16539644 16539670 chr2R 16544846 16544849 copia 4 5200 1.5 1.0 1.2 1.8 5205 chr2R 16539644 intergenic not near genes chr2R 16542246 intergenic not near genes chr2R 16544849 intergenic not near genes chr2R_4_16540001 chr2R_16540001 RAL-879 322 chr2R 16618726 16618742 chr2R 16618786 16618818 4 67 3.0 1.5 2.2 1.2 92 chr2R 16618726 intron CG5065 + chr2R 16618772 intron CG5065 + chr2R 16618818 5` UTR CG5065 + chr2R_4_16615001 chr2R_16615001 RAL-879 323 chr2R 16705088 16705102 chr2R 16705176 16705177 8 89 4.0 5.0 4.5 1.5 89 chr2R 16705088 intron CG30463 - chr2R 16705132 intron CG30463 - chr2R 16705177 intron CG30463 - chr2R_8_16705001 chr2R_16705001 RAL-879 324 chr2R 16737140 16737165 chr2R 16737240 16737264 6 97 7.0 4.0 5.5 0.9 124 chr2R 16737140 3` UTR CG43104 - chr2R 16737202 3` UTR CG43104 - chr2R 16737264 exon CG43104 - chr2R_6_16735001 chr2R_16735001 RAL-879 325 chr2R 17147243 17147269 chr2R 17152274 17152299 jockey 8 5030 2.5 4.5 3.5 1.8 5056 chr2R 17147243 intergenic not near genes chr2R 17149771 intergenic not near genes chr2R 17152299 intergenic not near genes chr2R_8_17145001 chr2R_17145001 RAL-879 326 chr2R 17250396 17250416 chr2R 17250470 17250490 4 72 1.5 0.5 1.0 2.0 94 chr2R 17250396 intron mbl + chr2R 17250443 intron mbl + chr2R 17250490 intron mbl + chr2R_4_17250001 chr2R_17250001 RAL-879 327 chr2R 17443784 17443799 chr2R 17443859 17443875 4 76 1.5 1.0 1.2 1.8 91 chr2R 17443784 intron EDTP - chr2R 17443830 intron EDTP - chr2R 17443875 intron EDTP - chr2R_4_17440001 chr2R_17440001 RAL-879 328 chr2R 17459030 17459038 chr2R 17459115 17459123 4 85 2.5 4.5 3.5 0.9 93 chr2R 17459030 intron CG14478 + chr2R 17459076 intron CG14478 + chr2R 17459123 intron CG14478 + chr2R_4_17455001 chr2R_17455001 RAL-879 329 chr2R 17478852 17478865 chr2R 17478911 17478913 6 60 1.5 2.5 2.0 2.0 61 chr2R 17478852 3` UTR,intron CG43110 -,veil + chr2R 17478882 3` UTR,intron CG43110 -,veil + chr2R 17478913 3` UTR,intron CG43110 -,veil + chr2R_6_17475001 chr2R_17475001 RAL-879 330 chr2R 17616982 17617010 chr2R 17617057 17617058 10 69 4.5 1.0 2.8 2.6 76 chr2R 17616982 intron,3` UTR CG10936 -,CG44403 - chr2R 17617020 intron,3` UTR CG10936 -,CG44403 - chr2R 17617058 intron,3` UTR CG10936 -,CG44403 - chr2R_10_17615001 chr2R_17615001 RAL-879 331 chr2R 17653231 17653256 chr2R 17653314 17653342 7 85 4.5 4.5 4.5 1.3 111 chr2R 17653231 intron CCHa1-R - chr2R 17653286 intron CCHa1-R - chr2R 17653342 intron CCHa1-R - chr2R_7_17650001 chr2R_17650001 RAL-879 332 chr2R 17997077 17997097 chr2R 17997176 17997196 10 98 18.0 10.0 14.0 0.7 119 chr2R 17997077 intron dpr13 - chr2R 17997136 intron dpr13 - chr2R 17997196 intron dpr13 - chr2R_10_17995001 chr2R_17995001 RAL-879 333 chr2R 18142920 18142922 chr2R 18143124 18143161 4 222 11.0 3.5 7.2 0.5 241 chr2R 18142920 intron,5` UTR pAbp +,snoRNA:Psi18S-1347a + chr2R 18143040 intron,5` UTR pAbp +,snoRNA:Psi18S-1347b + chr2R 18143161 intron pAbp + chr2R_4_18140001 chr2R_18140001 RAL-879 334 chr2R 18171513 18171520 chr2R 18171634 18171657 4 130 2.5 0.0 1.2 1.8 144 chr2R 18171513 intron Dgp-1 - chr2R 18171585 intron Dgp-1 - chr2R 18171657 intron Dgp-1 - chr2R_4_18170001 chr2R_18170001 RAL-879 335 chr2R 18308299 18308319 chr2R 18308397 18308423 10 100 3.0 4.0 3.5 2.2 124 chr2R 18308299 intron sbb - chr2R 18308361 intron sbb - chr2R 18308423 intron sbb - chr2R_10_18305001 chr2R_18305001 RAL-879 336 chr2R 18401403 18401436 chr2R 18401540 18401573 5 135 2.5 1.0 1.8 1.8 170 chr2R 18401403 exon GstE3 + chr2R 18401488 intergenic GstE3 + chr2R 18401573 intergenic GstE3 + chr2R_5_18400001 chr2R_18400001 RAL-879 337 chr2R 18402106 18402122 chr2R 18402185 18402186 5 75 4.0 1.5 2.8 1.3 80 chr2R 18402106 intergenic not near genes chr2R 18402146 intergenic not near genes chr2R 18402186 intergenic not near genes chr2R_5_18400001 chr2R_18400001 RAL-879 338 chr2R 18486844 18486880 chr2R 18487106 18487142 11 256 2.0 2.0 2.0 3.7 298 chr2R 18486844 intron CG30116 - chr2R 18486993 intron CG30116 - chr2R 18487142 intron CG30116 - chr2R_11_18485001 chr2R_18485001 RAL-879 339 chr2R 18528218 18528221 chr2R 18528282 18528291 4 68 1.5 2.0 1.8 1.4 73 chr2R 18528218 intron CG10924 + chr2R 18528254 intron CG10924 + chr2R 18528291 intron CG10924 + chr2R_4_18525001 chr2R_18525001 RAL-879 340 chr2R 18575802 18575829 chr2R 18581986 18582004 3S18 8 6180 4.5 3.0 3.8 1.7 6202 chr2R 18575802 intron GEFmeso - chr2R 18578903 intron GEFmeso - chr2R 18582004 intron GEFmeso - chr2R_8_18575001 chr2R_18575001 RAL-879 341 chr2R 18590889 18590900 chr2R 18600023 18600023 roo 7 9138 3.5 4.0 3.8 1.5 9134 chr2R 18590889 intron GEFmeso - chr2R 18595456 intron GEFmeso - chr2R 18600023 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-879 342 chr2R 18670276 18670286 chr2R 18670373 18670379 4 95 5.5 6.5 6.0 0.6 103 chr2R 18670276 intron edl - chr2R 18670328 intron edl - chr2R 18670379 intron edl - chr2R_4_18670001 chr2R_18670001 RAL-879 343 chr2R 18670287 18670299 chr2R 18670367 18670378 7 82 4.5 5.5 5.0 1.2 91 chr2R 18670287 intron edl - chr2R 18670332 intron edl - chr2R 18670378 intron edl - chr2R_7_18670001 chr2R_18670001 RAL-879 344 chr2R 18782209 18782226 chr2R 18782289 18782301 4 76 1.0 0.0 0.5 2.7 92 chr2R 18782209 intergenic not near genes chr2R 18782255 intergenic not near genes chr2R 18782301 intergenic not near genes chr2R_4_18780001 chr2R_18780001 RAL-879 345 chr2R 18808162 18808177 chr2R 18808238 18808246 6 71 3.0 2.5 2.8 1.6 84 chr2R 18808162 intergenic CG15096 - chr2R 18808204 intergenic CG15096 - chr2R 18808246 intergenic CG15096 - chr2R_6_18805001 chr2R_18805001 RAL-879 346 chr2R 18855205 18855218 chr2R 18855269 18855297 6 71 3.5 5.5 4.5 1.1 92 chr2R 18855205 intergenic Jheh1 - chr2R 18855251 intergenic Jheh1 - chr2R 18855297 intergenic Jheh1 -,Jheh2 - chr2R_6_18855001 chr2R_18855001 RAL-879 347 chr2R 18953171 18953191 chr2R 18953244 18953278 4 83 3.5 0.5 2.0 1.3 107 chr2R 18953171 intron sano + chr2R 18953224 intron sano + chr2R 18953278 intron sano + chr2R_4_18950001 chr2R_18950001 RAL-879 348 chr2R 19015440 19015461 chr2R 19015528 19015549 6 88 2.0 8.0 5.0 1.0 109 chr2R 19015440 intergenic not near genes chr2R 19015494 intergenic not near genes chr2R 19015549 intergenic not near genes chr2R_6_19015001 chr2R_19015001 RAL-879 349 chr2R 19168388 19168408 chr2R 19168465 19168497 6 79 1.5 4.0 2.8 1.6 109 chr2R 19168388 intron CG10737 + chr2R 19168442 intron CG10737 + chr2R 19168497 intron CG10737 + chr2R_6_19165001 chr2R_19165001 RAL-879 350 chr2R 19300970 19300994 chr2R 19301043 19301050 5 70 1.0 2.0 1.5 2.0 80 chr2R 19300970 intron Tab2 + chr2R 19301010 intron Tab2 + chr2R 19301050 intron Tab2 + chr2R_5_19300001 chr2R_19300001 RAL-879 351 chr2R 19331247 19331267 chr2R 19331312 19331321 5 64 6.5 3.0 4.8 0.9 74 chr2R 19331247 intron,intron Rgk1 -,CG34045 + chr2R 19331284 intron,intron Rgk1 -,CG34045 + chr2R 19331321 intron,intron Rgk1 -,CG34045 + chr2R_5_19330001 chr2R_19330001 RAL-879 352 chr2R 19373707 19373716 chr2R 19373865 19373885 9 164 4.0 4.0 4.0 1.8 178 chr2R 19373707 intergenic CG9416 - chr2R 19373796 intergenic CG9416 - chr2R 19373885 intergenic CG9416 - chr2R_9_19370001 chr2R_19370001 RAL-879 353 chr2R 19776619 19776627 chr2R 19779926 19779950 jockey 5 3315 2.0 4.5 3.2 1.2 3331 chr2R 19776619 intergenic not near genes chr2R 19778284 intergenic not near genes chr2R 19779950 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-879 354 chr2R 19957455 19957463 chr2R 19962630 19962647 copia 4 5177 5.5 1.5 3.5 0.9 5192 chr2R 19957455 intergenic CG44623 + chr2R 19960051 intergenic not near genes chr2R 19962647 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-879 355 chr2R 20031007 20031020 chr2R 20031082 20031097 6 81 3.5 3.0 3.2 1.4 90 chr2R 20031007 intergenic not near genes chr2R 20031052 intergenic not near genes chr2R 20031097 intergenic not near genes chr2R_6_20030001 chr2R_20030001 RAL-879 356 chr2R 20031909 20031940 chr2R 20032004 20032036 5 92 0.5 2.5 1.5 2.0 127 chr2R 20031909 intergenic not near genes chr2R 20031972 intergenic not near genes chr2R 20032036 intergenic not near genes chr2R_5_20030001 chr2R_20030001 RAL-879 357 chr2R 20069267 20069277 chr2R 20071874 20071876 opus 5 2612 3.5 3.5 3.5 1.1 2609 chr2R 20069267 intergenic not near genes chr2R 20070572 intergenic not near genes chr2R 20071876 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-879 358 chr2R 20080601 20080617 chr2R 20080677 20080693 4 74 0.0 4.0 2.0 1.3 92 chr2R 20080601 intergenic not near genes chr2R 20080647 intergenic not near genes chr2R 20080693 intergenic not near genes chr2R_4_20080001 chr2R_20080001 RAL-879 359 chr2R 20118884 20118901 chr2R 20118963 20118968 4 76 3.5 2.0 2.8 1.1 84 chr2R 20118884 intergenic not near genes chr2R 20118926 intergenic not near genes chr2R 20118968 intergenic not near genes chr2R_4_20115001 chr2R_20115001 RAL-879 360 chr2R 20422046 20422053 chr2R 20422107 20422137 5 72 0.5 2.0 1.2 2.3 91 chr2R 20422046 intergenic not near genes chr2R 20422092 intergenic not near genes chr2R 20422137 intergenic not near genes chr2R_5_20420001 chr2R_20420001 RAL-879 361 chr2R 20424418 20424452 chr2R 20424499 20424509 6 74 2.0 4.0 3.0 1.5 91 chr2R 20424418 5` UTR CG12484 + chr2R 20424464 5` UTR CG12484 + chr2R 20424509 5` UTR CG12484 + chr2R_6_20420001 chr2R_20420001 RAL-879 362 chr2R 20528764 20528781 chr2R 20528936 20528955 5 173 5.0 8.0 6.5 0.7 191 chr2R 20528764 exon CG30151 - chr2R 20528860 exon CG30151 - chr2R 20528955 exon CG30151 - chr2R_5_20525001 chr2R_20525001 RAL-879 363 chr2R 20739443 20739477 chr2R 20744208 20744245 F-element 6 4764 4.5 2.0 3.2 1.4 4802 chr2R 20739443 intron dpr + chr2R 20741844 intron dpr + chr2R 20744245 intron dpr + chr2R_6_20740001 chr2R_20740001 RAL-879 364 chr2R 21117472 21117493 chr2R 21117828 21117849 4 354 1.5 2.5 2.0 1.3 377 chr2R 21117472 intron ktub + chr2R 21117660 intron ktub + chr2R 21117849 intron ktub + chr2R_4_21115001 chr2R_21115001 RAL-879 365 chr2R 21253839 21253847 chr2R 21253911 21253944 5 81 1.5 5.0 3.2 1.2 105 chr2R 21253839 intergenic not near genes chr2R 21253892 intergenic not near genes chr2R 21253944 intergenic not near genes chr2R_5_21250001 chr2R_21250001 RAL-879 366 chr2R 21408384 21408408 chr2R 21408468 21408497 5 81 1.0 0.0 0.5 3.3 113 chr2R 21408384 intron Sdc - chr2R 21408440 intron Sdc - chr2R 21408497 intron Sdc - chr2R_5_21405001 chr2R_21405001 RAL-879 367 chr2R 21505780 21505796 chr2R 21505846 21505876 6 78 0.5 3.5 2.0 2.0 96 chr2R 21505780 intron MESK2 + chr2R 21505828 intron MESK2 + chr2R 21505876 intron MESK2 + chr2R_6_21505001 chr2R_21505001 RAL-879 368 chr2R 21753087 21753117 chr2R 21753572 21753595 roo 6 478 3.0 4.5 3.8 1.2 508 chr2R 21753087 intergenic not near genes chr2R 21753341 intergenic not near genes chr2R 21753595 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-879 369 chr2R 21841481 21841501 chr2R 21841566 21841576 4 82 1.5 2.0 1.8 1.4 95 chr2R 21841481 intergenic not near genes chr2R 21841528 intergenic not near genes chr2R 21841576 intergenic not near genes chr2R_4_21840001 chr2R_21840001 RAL-879 370 chr2R 21857346 21857371 chr2R 21857437 21857462 6 87 4.0 2.5 3.2 1.4 116 chr2R 21857346 intergenic not near genes chr2R 21857404 intergenic not near genes chr2R 21857462 intergenic not near genes chr2R_6_21855001 chr2R_21855001 RAL-879 371 chr2R 21906289 21906301 chr2R 21906376 21906402 4 94 2.0 1.5 1.8 1.4 113 chr2R 21906289 intron Fili + chr2R 21906346 intron Fili + chr2R 21906402 intron Fili + chr2R_4_21905001 chr2R_21905001 RAL-879 372 chr2R 22003093 22003122 chr2R 22003174 22003202 7 78 2.0 1.0 1.5 2.8 109 chr2R 22003093 intron CG34370 - chr2R 22003148 intron CG34370 - chr2R 22003202 intron CG34370 - chr2R_7_22000001 chr2R_22000001 RAL-879 373 chr2R 22312776 22312804 chr2R 22312902 22312918 7 123 2.5 0.0 1.2 3.2 142 chr2R 22312776 intergenic CR44758 + chr2R 22312847 intergenic CR44758 + chr2R 22312918 5` UTR CR44758 + chr2R_7_22310001 chr2R_22310001 RAL-879 374 chr2R 22349705 22349726 chr2R 22351473 22351495 jockey 7 1774 3.5 2.0 2.8 1.8 1790 chr2R 22349705 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351495 intron Liprin-gamma - chr2R_7_22350001 chr2R_22350001 RAL-879 375 chr2R 22377812 22377839 chr2R 22377898 22377906 5 77 3.0 1.5 2.2 1.6 94 chr2R 22377812 3` UTR Rtf1 + chr2R 22377859 3` UTR Rtf1 + chr2R 22377906 3` UTR Rtf1 + chr2R_5_22375001 chr2R_22375001 RAL-879 376 chr2R 22525772 22525787 chr2R 22529313 22529318 jockey 5 3543 2.5 2.0 2.2 1.6 3546 chr2R 22525772 intron px - chr2R 22527545 intron px - chr2R 22529318 intron px - chr2R_5_22525001 chr2R_22525001 RAL-879 377 chr2R 22659508 22659532 chr2R 22659583 22659610 7 73 4.0 3.5 3.8 1.5 102 chr2R 22659508 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R 22659559 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R 22659610 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R_7_22655001 chr2R_22655001 RAL-879 378 chr2R 22666604 22666617 chr2R 22666682 22666692 4 78 3.0 1.0 2.0 1.3 88 chr2R 22666604 3` UTR,intron CR45269 -,CR42868 + chr2R 22666648 5` UTR CR42868 + chr2R 22666692 5` UTR CR42868 + chr2R_4_22665001 chr2R_22665001 RAL-879 379 chr2R 22723239 22723263 chr2R 22723315 22723339 5 73 0.5 1.5 1.0 2.5 100 chr2R 22723239 intron jbug - chr2R 22723289 intron jbug - chr2R 22723339 intron jbug - chr2R_5_22720001 chr2R_22720001 RAL-879 380 chr2R 22941832 22941854 chr2R 22941907 22941909 4 68 1.5 2.0 1.8 1.4 77 chr2R 22941832 intergenic CG42694 + chr2R 22941870 intergenic CG42694 + chr2R 22941909 5` UTR CG42694 + chr2R_4_22940001 chr2R_22940001 RAL-879 381 chr2R 22971505 22971531 chr2R 22971581 22971609 8 73 0.5 5.5 3.0 2.0 104 chr2R 22971505 intergenic not near genes chr2R 22971557 intergenic not near genes chr2R 22971609 intergenic not near genes chr2R_8_22970001 chr2R_22970001 RAL-879 382 chr2R 23356277 23356310 chr2R 23356366 23356399 8 84 3.5 5.5 4.5 1.5 122 chr2R 23356277 3` UTR Rpi + chr2R 23356338 3` UTR Rpi + chr2R 23356399 3` UTR,3` UTR Rpi +,CG3500 - chr2R_8_23355001 chr2R_23355001 RAL-879 383 chr2R 23427769 23427793 chr2R 23427910 23427931 5 139 2.0 4.0 3.0 1.2 162 chr2R 23427769 intron CG9815 - chr2R 23427850 intron CG9815 - chr2R 23427931 intron CG9815 - chr2R_5_23425001 chr2R_23425001 RAL-879 384 chr2R 23481665 23481673 chr2R 23481737 23481752 5 78 0.5 3.0 1.8 1.8 87 chr2R 23481665 intron CG43795 + chr2R 23481708 intron CG43795 + chr2R 23481752 intron CG43795 + chr2R_5_23480001 chr2R_23480001 RAL-879 385 chr2R 23508923 23508939 chr2R 23509040 23509056 5 117 2.5 0.5 1.5 2.0 133 chr2R 23508923 intergenic not near genes chr2R 23508990 intergenic not near genes chr2R 23509056 intergenic not near genes chr2R_5_23505001 chr2R_23505001 RAL-879 386 chr2R 23563892 23563913 chr2R 23563972 23563983 5 74 4.0 4.0 4.0 1.0 91 chr2R 23563892 3` UTR Pi3K59F + chr2R 23563938 3` UTR Pi3K59F + chr2R 23563983 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_5_23560001 chr2R_23560001 RAL-879 387 chr2R 23784472 23784506 chr2R 23784548 23784549 9 68 2.5 2.5 2.5 2.6 77 chr2R 23784472 intron CG9850 - chr2R 23784510 intron CG9850 - chr2R 23784549 intron CG9850 - chr2R_9_23780001 chr2R_23780001 RAL-879 388 chr2R 23986531 23986548 chr2R 23986592 23986628 6 70 2.0 1.5 1.8 2.1 97 chr2R 23986531 intron Phm - chr2R 23986580 intron Phm - chr2R 23986628 intron,5` UTR Phm -,CG30178 + chr2R_6_23985001 chr2R_23985001 RAL-879 389 chr2R 24177250 24177267 chr2R 24184734 24184752 412 4 7484 2.5 5.5 4.0 0.8 7502 chr2R 24177250 3` UTR Nop60B + chr2R 24181001 intron Nop60B + chr2R 24184752 3` UTR Nop60B + chr2R_4_24180001 chr2R_24180001 RAL-879 390 chr2R 24292841 24292853 chr2R 24292917 24292926 4 76 4.0 3.0 3.5 0.9 85 chr2R 24292841 intergenic not near genes chr2R 24292884 intergenic not near genes chr2R 24292926 intergenic not near genes chr2R_4_24290001 chr2R_24290001 RAL-879 391 chr2R 24353429 24353455 chr2R 24361791 24361800 roo 8 8359 3.5 4.5 4.0 1.6 8371 chr2R 24353429 intron,intron bs +,CR44811 - chr2R 24357614 intron,intron bs +,CR44811 - chr2R 24361800 intron,intron bs +,CR44811 - chr2R_8_24355001 chr2R_24355001 RAL-879 392 chr2R 24548921 24548948 chr2R 24549005 24549014 6 77 3.0 2.0 2.5 1.7 93 chr2R 24548921 intron,intron CG4622 -,ITP + chr2R 24548968 intron,intron CG4622 -,ITP + chr2R 24549014 intron,intron CG4622 -,ITP + chr2R_6_24545001 chr2R_24545001 RAL-879 393 chr2R 24647588 24647617 chr2R 24655145 24655174 412 7 7552 5.5 3.5 4.5 1.3 7586 chr2R 24647588 intergenic not near genes chr2R 24651381 intergenic not near genes chr2R 24655174 intergenic not near genes chr2R_7_24650001 chr2R_24650001 RAL-879 394 chr2R 24690020 24690044 chr2R 24690116 24690140 5 94 1.5 1.5 1.5 2.0 120 chr2R 24690020 intergenic not near genes chr2R 24690080 intergenic not near genes chr2R 24690140 intergenic not near genes chr2R_5_24690001 chr2R_24690001 RAL-879 395 chr2R 24727893 24727911 chr2R 24735401 24735402 mdg1 7 7503 3.0 4.0 3.5 1.6 7509 chr2R 24727893 intron Mid1 - chr2R 24731648 intron Mid1 - chr2R 24735402 intron Mid1 - chr2R_7_24730001 chr2R_24730001 RAL-879 396 chr2R 24763609 24763643 chr2R 24765585 24765619 G2 12 1969 3.5 4.0 3.8 2.5 2010 chr2R 24763609 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765619 exon CG3894 + chr2R_12_24760001 chr2R_24760001 RAL-879 397 chr2R 24848653 24848688 chr2R 24848737 24848772 8 81 1.0 2.5 1.8 2.9 119 chr2R 24848653 intergenic CG3650 + chr2R 24848712 intergenic CG3650 + chr2R 24848772 intergenic CG3650 + chr2R_8_24845001 chr2R_24845001 RAL-879 398 chr2R 25081607 25081627 chr2R 25082700 25082706 5 1090 8.0 5.0 6.5 0.7 1099 chr2R 25081607 intron gol - chr2R 25082156 intron gol - chr2R 25082706 intron gol - chr2R_5_25080001 chr2R_25080001 RAL-879 399 chr2R 25101276 25101307 chr2R 25101377 25101383 9 97 1.5 1.5 1.5 3.6 107 chr2R 25101276 intron lov - chr2R 25101330 intron lov - chr2R 25101383 intron lov - chr2R_9_25100001 chr2R_25100001 RAL-879 400 chr3L 41454 41462 chr3L 41606 41621 4 157 2.0 2.5 2.2 1.2 167 chr3L 41454 intergenic not near genes chr3L 41538 intergenic not near genes chr3L 41621 intergenic not near genes chr3L_4_40001 chr3L_40001 RAL-879 401 chr3L 68992 69014 chr3L 69079 69099 5 86 2.5 4.5 3.5 1.1 107 chr3L 68992 3` UTR Lsp1gamma + chr3L 69046 intergenic Lsp1gamma +,CR44510 + chr3L 69099 intergenic CR44510 +,Lsp1gamma + chr3L_5_65001 chr3L_65001 RAL-879 402 chr3L 470942 470947 chr3L 471152 471156 4 212 2.5 5.0 3.8 0.8 214 chr3L 470942 intron klar - chr3L 471049 intron klar - chr3L 471156 intron klar - chr3L_4_470001 chr3L_470001 RAL-879 403 chr3L 524761 524774 chr3L 524828 524856 4 73 0.0 0.0 0.0 4.0 95 chr3L 524761 intron klar - chr3L 524808 intron klar - chr3L 524856 intron klar - chr3L_4_520001 chr3L_520001 RAL-879 404 chr3L 559523 559548 chr3L 559912 559918 4 381 3.5 0.5 2.0 1.3 395 chr3L 559523 intron hipk + chr3L 559720 intron hipk + chr3L 559918 intron hipk + chr3L_4_555001 chr3L_555001 RAL-879 405 chr3L 651396 651424 chr3L 651474 651492 8 77 1.5 4.5 3.0 2.0 96 chr3L 651396 intergenic Gale +,CG3402 - chr3L 651444 intergenic CG3402 -,Gale + chr3L 651492 intergenic CG3402 -,Gale + chr3L_8_650001 chr3L_650001 RAL-879 406 chr3L 925175 925210 chr3L 932601 932617 mdg1 8 7422 2.0 5.0 3.5 1.8 7442 chr3L 925175 intron Glut1 + chr3L 928896 intron Glut1 + chr3L 932617 intron Glut1 + chr3L_8_925001 chr3L_925001 RAL-879 407 chr3L 933910 933939 chr3L 934013 934042 7 100 2.0 2.0 2.0 2.3 132 chr3L 933910 intron Glut1 + chr3L 933976 intron Glut1 + chr3L 934042 intron Glut1 + chr3L_7_930001 chr3L_930001 RAL-879 408 chr3L 939771 939803 chr3L 940892 940908 jockey 8 1116 3.5 1.5 2.5 2.3 1137 chr3L 939771 intron Glut1 + chr3L 940340 intron Glut1 + chr3L 940908 intron Glut1 + chr3L_8_940001 chr3L_940001 RAL-879 409 chr3L 1031582 1031612 chr3L 1031651 1031660 4 66 1.5 1.0 1.2 1.8 78 chr3L 1031582 intron trio - chr3L 1031621 intron trio - chr3L 1031660 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-879 410 chr3L 1040549 1040574 chr3L 1040632 1040658 6 83 4.5 1.5 3.0 1.5 109 chr3L 1040549 intron bab1 - chr3L 1040604 intron bab1 - chr3L 1040658 intron bab1 - chr3L_6_1040001 chr3L_1040001 RAL-879 411 chr3L 1154129 1154157 chr3L 1163279 1163301 roo 5 9149 1.0 1.5 1.2 2.3 9172 chr3L 1154129 intron bab2 - chr3L 1158715 intron bab2 - chr3L 1163301 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-879 412 chr3L 1219605 1219623 chr3L 1227329 1227339 412 4 7722 2.5 4.0 3.2 1.0 7734 chr3L 1219605 intron mwh + chr3L 1223472 intron mwh + chr3L 1227339 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-879 413 chr3L 1315033 1315053 chr3L 1315098 1315117 4 62 26.0 25.0 25.5 0.2 84 chr3L 1315033 exon CG9153 + chr3L 1315075 exon CG9153 + chr3L 1315117 exon CG9153 + chr3L_4_1315001 chr3L_1315001 RAL-879 414 chr3L 1310985 1311004 chr3L 1315845 1315873 12 4867 39.0 44.5 41.8 0.3 4888 chr3L 1310985 exon CG2469 + chr3L 1313429 intergenic CG9186 -,CG9153 + chr3L 1315873 exon CG9153 + chr3L_12_1310001 chr3L_1310001 RAL-879 415 chr3L 1347175 1347193 chr3L 1347243 1347277 7 71 2.5 3.5 3.0 1.8 102 chr3L 1347175 intron Ptp61F - chr3L 1347226 intron Ptp61F - chr3L 1347277 intron Ptp61F - chr3L_7_1345001 chr3L_1345001 RAL-879 416 chr3L 1415780 1415791 chr3L 1415862 1415871 4 80 3.0 6.0 4.5 0.7 91 chr3L 1415780 intron Ptp61F - chr3L 1415826 intron Ptp61F - chr3L 1415871 intron Ptp61F - chr3L_4_1415001 chr3L_1415001 RAL-879 417 chr3L 1569527 1569532 chr3L 1569602 1569603 4 74 1.5 7.0 4.2 0.8 76 chr3L 1569527 5` UTR CG12004 + chr3L 1569565 intron CG12004 + chr3L 1569603 intron CG12004 + chr3L_4_1565001 chr3L_1565001 RAL-879 418 chr3L 1810030 1810068 chr3L 1810203 1810239 4 171 1.0 1.0 1.0 2.0 209 chr3L 1810030 intergenic not near genes chr3L 1810134 intergenic GV1 + chr3L 1810239 intergenic GV1 + chr3L_4_1810001 chr3L_1810001 RAL-879 419 chr3L 1991121 1991152 chr3L 1991196 1991219 5 75 1.0 2.0 1.5 2.0 98 chr3L 1991121 intergenic not near genes chr3L 1991170 intergenic not near genes chr3L 1991219 intergenic not near genes chr3L_5_1990001 chr3L_1990001 RAL-879 420 chr3L 2168783 2168805 chr3L 2168874 2168896 5 91 1.5 3.5 2.5 1.4 113 chr3L 2168783 exon CG15879 - chr3L 2168840 intron CG15879 - chr3L 2168896 intron CG15879 - chr3L_5_2165001 chr3L_2165001 RAL-879 421 chr3L 2282989 2283015 chr3L 2283064 2283067 4 67 5.0 2.5 3.8 0.8 78 chr3L 2282989 5` UTR MsR2 + chr3L 2283028 5` UTR MsR2 + chr3L 2283067 5` UTR MsR2 + chr3L_4_2280001 chr3L_2280001 RAL-879 422 chr3L 2308004 2308034 chr3L 2308110 2308125 4 96 5.5 5.0 5.2 0.6 121 chr3L 2308004 intergenic not near genes chr3L 2308064 intergenic not near genes chr3L 2308125 intergenic not near genes chr3L_4_2305001 chr3L_2305001 RAL-879 423 chr3L 2447530 2447535 chr3L 2456661 2456691 roo 4 9140 3.0 3.0 3.0 1.0 9161 chr3L 2447530 intron CG45186 + chr3L 2452110 intron CG45186 + chr3L 2456691 intron CG45186 + chr3L_4_2450001 chr3L_2450001 RAL-879 424 chr3L 2505411 2505431 chr3L 2505496 2505514 4 84 1.5 0.5 1.0 2.0 103 chr3L 2505411 3` UTR Spn - chr3L 2505462 3` UTR Spn - chr3L 2505514 3` UTR Spn - chr3L_4_2505001 chr3L_2505001 RAL-879 425 chr3L 2523535 2523540 chr3L 2523588 2523620 4 72 3.5 2.5 3.0 1.0 85 chr3L 2523535 intron Spn - chr3L 2523578 intron Spn - chr3L 2523620 intron Spn - chr3L_4_2520001 chr3L_2520001 RAL-879 426 chr3L 2533671 2533678 chr3L 2533728 2533740 5 67 7.5 3.0 5.2 0.8 69 chr3L 2533671 intron Spn - chr3L 2533706 intron Spn - chr3L 2533740 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-879 427 chr3L 2561535 2561559 chr3L 2561606 2561635 4 68 1.0 2.5 1.8 1.4 100 chr3L 2561535 intron msn - chr3L 2561585 intron msn - chr3L 2561635 intron msn - chr3L_4_2560001 chr3L_2560001 RAL-879 428 chr3L 2626413 2626445 chr3L 2626537 2626542 6 115 4.0 1.0 2.5 1.7 129 chr3L 2626413 intron Pxn - chr3L 2626478 intron Pxn - chr3L 2626542 intron Pxn - chr3L_6_2625001 chr3L_2625001 RAL-879 429 chr3L 2683948 2683963 chr3L 2684024 2684039 4 75 2.0 2.5 2.2 1.2 91 chr3L 2683948 intron Fife - chr3L 2683994 intron Fife - chr3L 2684039 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-879 430 chr3L 2698523 2698559 chr3L 2698607 2698643 8 80 2.0 1.5 1.8 2.9 120 chr3L 2698523 intron Fife - chr3L 2698583 intron Fife - chr3L 2698643 intron Fife - chr3L_8_2695001 chr3L_2695001 RAL-879 431 chr3L 2795732 2795745 chr3L 2795849 2795868 4 120 1.0 3.0 2.0 1.3 136 chr3L 2795732 intron CG43444 - chr3L 2795800 intron CG43444 - chr3L 2795868 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-879 432 chr3L 2854482 2854500 chr3L 2854558 2854578 5 77 5.5 3.5 4.5 0.9 96 chr3L 2854482 intron CG43444 - chr3L 2854530 intron CG43444 - chr3L 2854578 intron CG43444 - chr3L_5_2850001 chr3L_2850001 RAL-879 433 chr3L 2899577 2899606 chr3L 2899688 2899718 13 111 0.5 4.5 2.5 3.7 141 chr3L 2899577 intron Shab + chr3L 2899648 intron Shab + chr3L 2899718 intron Shab + chr3L_13_2895001 chr3L_2895001 RAL-879 434 chr3L 2966019 2966028 chr3L 2966101 2966107 6 80 2.5 4.0 3.2 1.4 88 chr3L 2966019 intergenic not near genes chr3L 2966063 intergenic not near genes chr3L 2966107 intergenic not near genes chr3L_6_2965001 chr3L_2965001 RAL-879 435 chr3L 3075925 3075951 chr3L 3075986 3076009 8 63 5.0 5.5 5.2 1.3 84 chr3L 3075925 intron CG11486 + chr3L 3075967 intron CG11486 + chr3L 3076009 intron CG11486 + chr3L_8_3075001 chr3L_3075001 RAL-879 436 chr3L 3125787 3125800 chr3L 3125864 3125878 6 79 1.5 4.5 3.0 1.5 91 chr3L 3125787 intron prominin-like - chr3L 3125832 intron prominin-like - chr3L 3125878 intron prominin-like - chr3L_6_3125001 chr3L_3125001 RAL-879 437 chr3L 3165354 3165381 chr3L 3165431 3165461 8 79 3.5 1.5 2.5 2.3 107 chr3L 3165354 intron,intron Asciz -,CG32280 + chr3L 3165408 intron,intron Asciz -,CG32280 + chr3L 3165461 intron,intron Asciz -,CG32280 + chr3L_8_3165001 chr3L_3165001 RAL-879 438 chr3L 3281436 3281476 chr3L 3281931 3281971 Doc 7 486 1.0 1.0 1.0 3.5 535 chr3L 3281436 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281971 intron CG12017 + chr3L_7_3280001 chr3L_3280001 RAL-879 439 chr3L 3314135 3314171 chr3L 3314269 3314279 17 122 8.5 10.0 9.2 1.7 144 chr3L 3314135 intergenic ZnT63C +,Drsl2 + chr3L 3314207 intergenic Drsl2 +,ZnT63C + chr3L 3314279 intergenic Drsl2 +,ZnT63C + chr3L_17_3310001 chr3L_3310001 RAL-879 440 chr3L 3335728 3335756 chr3L 3335872 3335887 6 136 4.5 2.0 3.2 1.4 159 chr3L 3335728 exon Drsl1 - chr3L 3335808 intergenic Drsl1 -,Drsl6 - chr3L 3335887 intergenic Drsl1 -,Drsl6 - chr3L_6_3335001 chr3L_3335001 RAL-879 441 chr3L 3437769 3437805 chr3L 3437852 3437880 5 81 2.5 2.5 2.5 1.4 111 chr3L 3437769 intron eIF5B - chr3L 3437824 intron eIF5B - chr3L 3437880 intron eIF5B - chr3L_5_3435001 chr3L_3435001 RAL-879 442 chr3L 3475088 3475110 chr3L 3475516 3475554 jockey 7 435 1.0 2.0 1.5 2.8 466 chr3L 3475088 intron CG42324 + chr3L 3475321 intron CG42324 + chr3L 3475554 intron CG42324 + chr3L_7_3475001 chr3L_3475001 RAL-879 443 chr3L 3573168 3573192 chr3L 3573251 3573275 4 83 5.5 2.0 3.8 0.8 107 chr3L 3573168 intron Eip63E + chr3L 3573222 intron Eip63E + chr3L 3573275 intron Eip63E + chr3L_4_3570001 chr3L_3570001 RAL-879 444 chr3L 3619401 3619426 chr3L 3619495 3619514 4 89 0.5 0.0 0.2 3.3 113 chr3L 3619401 intergenic not near genes chr3L 3619458 intergenic not near genes chr3L 3619514 intergenic not near genes chr3L_4_3615001 chr3L_3615001 RAL-879 445 chr3L 3833739 3833765 chr3L 3833979 3833993 pogo 8 234 2.0 0.5 1.2 3.6 254 chr3L 3833739 intron enc + chr3L 3833866 intron enc + chr3L 3833993 intron enc + chr3L_8_3830001 chr3L_3830001 RAL-879 446 chr3L 4342429 4342438 chr3L 4342490 4342490 5 61 2.5 2.5 2.5 1.4 61 chr3L 4342429 intron Cip4 - chr3L 4342460 intron Cip4 - chr3L 4342490 intron Cip4 - chr3L_5_4340001 chr3L_4340001 RAL-879 447 chr3L 4607270 4607290 chr3L 4607359 4607365 5 87 2.5 2.5 2.5 1.4 95 chr3L 4607270 intron Src64B - chr3L 4607318 intron Src64B - chr3L 4607365 intron Src64B - chr3L_5_4605001 chr3L_4605001 RAL-879 448 chr3L 4775855 4775880 chr3L 4775941 4775950 6 84 1.0 2.5 1.8 2.1 95 chr3L 4775855 intron RhoGEF64C + chr3L 4775902 intron RhoGEF64C + chr3L 4775950 intron RhoGEF64C + chr3L_6_4775001 chr3L_4775001 RAL-879 449 chr3L 4837091 4837104 chr3L 4837180 4837205 5 97 4.0 2.0 3.0 1.2 114 chr3L 4837091 intergenic not near genes chr3L 4837148 intergenic not near genes chr3L 4837205 intergenic not near genes chr3L_5_4835001 chr3L_4835001 RAL-879 450 chr3L 4901132 4901161 chr3L 4907319 4907344 diver 4 6186 0.5 0.5 0.5 2.7 6212 chr3L 4901132 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907344 intergenic not near genes chr3L_4_4900001 chr3L_4900001 RAL-879 451 chr3L 4930696 4930716 chr3L 4930792 4930803 5 92 2.5 4.0 3.2 1.2 107 chr3L 4930696 intron CR43627 - chr3L 4930750 intron CR43627 - chr3L 4930803 intron CR43627 - chr3L_5_4930001 chr3L_4930001 RAL-879 452 chr3L 5034161 5034190 chr3L 5043310 5043321 roo 6 9147 1.5 1.0 1.2 2.7 9160 chr3L 5034161 intron Con - chr3L 5038741 intron Con - chr3L 5043321 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-879 453 chr3L 5675189 5675207 chr3L 5675280 5675300 4 90 8.0 5.0 6.5 0.5 111 chr3L 5675189 exon sif + chr3L 5675244 intron sif + chr3L 5675300 intron sif + chr3L_4_5675001 chr3L_5675001 RAL-879 454 chr3L 5675210 5675218 chr3L 5675279 5675298 4 85 5.5 5.0 5.2 0.6 88 chr3L 5675210 intron sif + chr3L 5675254 intron sif + chr3L 5675298 intron sif + chr3L_4_5675001 chr3L_5675001 RAL-879 455 chr3L 5926329 5926347 chr3L 5926503 5926518 BS 6 176 4.0 3.5 3.8 1.2 189 chr3L 5926329 intron Vap-33B + chr3L 5926424 intron Vap-33B + chr3L 5926518 intron Vap-33B + chr3L_6_5925001 chr3L_5925001 RAL-879 456 chr3L 6001690 6001696 chr3L 6004379 6004396 jockey 4 2697 5.5 0.5 3.0 1.0 2706 chr3L 6001690 intron PVRAP + chr3L 6003043 intron PVRAP + chr3L 6004396 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-879 457 chr3L 6022261 6022272 chr3L 6022322 6022354 7 69 1.5 4.0 2.8 1.8 93 chr3L 6022261 intron PVRAP + chr3L 6022308 intron PVRAP + chr3L 6022354 intron PVRAP + chr3L_7_6020001 chr3L_6020001 RAL-879 458 chr3L 6040280 6040304 chr3L 6040352 6040380 4 75 1.0 1.0 1.0 2.0 100 chr3L 6040280 intergenic Jon65Aiv + chr3L 6040330 intergenic Jon65Aiv + chr3L 6040380 intergenic Jon65Aiv + chr3L_4_6040001 chr3L_6040001 RAL-879 459 chr3L 6159869 6159897 chr3L 6159959 6159987 8 82 0.5 1.0 0.8 4.4 118 chr3L 6159869 intergenic not near genes chr3L 6159928 intergenic not near genes chr3L 6159987 intergenic not near genes chr3L_8_6155001 chr3L_6155001 RAL-879 460 chr3L 6220931 6220942 chr3L 6230065 6230094 roo 6 9140 5.5 5.5 5.5 0.9 9163 chr3L 6220931 5` UTR pncr008:3L + chr3L 6225512 intergenic not near genes chr3L 6230094 intergenic not near genes chr3L_6_6225001 chr3L_6225001 RAL-879 461 chr3L 6405676 6405687 chr3L 6432126 6432151 roo 5 26456 0.5 0.5 0.5 3.3 26475 chr3L 6405676 intron CG42747 + chr3L 6418914 intron CG42747 + chr3L 6432151 intron CG42747 + chr3L_5_6415001 chr3L_6415001 RAL-879 462 chr3L 6620532 6620546 chr3L 6621055 6621070 Rt1c 4 521 3.0 9.5 6.2 0.6 538 chr3L 6620532 intergenic not near genes chr3L 6620801 intergenic not near genes chr3L 6621070 intergenic not near genes chr3L_4_6620001 chr3L_6620001 RAL-879 463 chr3L 6652082 6652109 chr3L 6652157 6652173 5 73 2.5 3.0 2.8 1.3 91 chr3L 6652082 intergenic not near genes chr3L 6652128 intergenic not near genes chr3L 6652173 intergenic not near genes chr3L_5_6650001 chr3L_6650001 RAL-879 464 chr3L 6806511 6806535 chr3L 6806592 6806622 4 81 1.5 1.0 1.2 1.8 111 chr3L 6806511 intergenic not near genes chr3L 6806566 intergenic not near genes chr3L 6806622 intergenic not near genes chr3L_4_6805001 chr3L_6805001 RAL-879 465 chr3L 6974515 6974522 chr3L 6974607 6974623 4 98 0.0 6.5 3.2 1.0 108 chr3L 6974515 intron Galphai - chr3L 6974569 intron Galphai - chr3L 6974623 intron Galphai - chr3L_4_6970001 chr3L_6970001 RAL-879 466 chr3L 7033172 7033176 chr3L 7033252 7033254 4 80 9.0 4.5 6.8 0.5 82 chr3L 7033172 intron Mp + chr3L 7033213 intron Mp + chr3L 7033254 intron Mp + chr3L_4_7030001 chr3L_7030001 RAL-879 467 chr3L 7033185 7033205 chr3L 7033250 7033283 9 71 3.0 4.0 3.5 2.0 98 chr3L 7033185 intron Mp + chr3L 7033234 intron Mp + chr3L 7033283 intron Mp + chr3L_9_7030001 chr3L_7030001 RAL-879 468 chr3L 7112602 7112615 chr3L 7112670 7112700 9 78 1.0 2.5 1.8 3.2 98 chr3L 7112602 intron form3 + chr3L 7112651 intron form3 + chr3L 7112700 intron form3 + chr3L_9_7110001 chr3L_7110001 RAL-879 469 chr3L 7285453 7285477 chr3L 7285527 7285555 7 73 2.5 2.0 2.2 2.2 102 chr3L 7285453 intron unc-13-4A - chr3L 7285504 intron unc-13-4A - chr3L 7285555 intron unc-13-4A - chr3L_7_7285001 chr3L_7285001 RAL-879 470 chr3L 7308189 7308219 chr3L 7308265 7308295 9 74 2.5 2.5 2.5 2.6 106 chr3L 7308189 intron unc-13-4A - chr3L 7308242 intron unc-13-4A - chr3L 7308295 intron unc-13-4A - chr3L_9_7305001 chr3L_7305001 RAL-879 471 chr3L 7377326 7377348 chr3L 7380420 7380440 297 4 3093 1.0 2.0 1.5 1.6 3114 chr3L 7377326 intron SMSr - chr3L 7378883 intron SMSr - chr3L 7380440 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-879 472 chr3L 7749470 7749471 chr3L 11777678 11777678 6 4028207 7.5 14.0 10.8 0.5 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_9760001 chr3L_9760001 RAL-879 473 chr3L 7760086 7760113 chr3L 7760162 7760189 6 75 2.0 0.5 1.2 2.7 103 chr3L 7760086 intergenic Hn + chr3L 7760138 intergenic Hn + chr3L 7760189 intergenic Hn + chr3L_6_7760001 chr3L_7760001 RAL-879 474 chr3L 7793710 7793744 chr3L 7800762 7800796 297 6 7051 0.5 2.0 1.2 2.7 7086 chr3L 7793710 intron CG32369 - chr3L 7797253 intron CG32369 - chr3L 7800796 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-879 475 chr3L 7903065 7903092 chr3L 7903147 7903153 5 74 0.5 3.0 1.8 1.8 88 chr3L 7903065 intron pbl - chr3L 7903109 intron pbl - chr3L 7903153 intron pbl - chr3L_5_7900001 chr3L_7900001 RAL-879 476 chr3L 7985372 7985394 chr3L 7987700 7987707 NOF 5 2325 0.0 6.5 3.2 1.2 2335 chr3L 7985372 intron nmo + chr3L 7986540 intron nmo + chr3L 7987707 intron nmo + chr3L_5_7985001 chr3L_7985001 RAL-879 477 chr3L 8295790 8295824 chr3L 8295948 8295961 13 152 3.0 2.5 2.8 3.4 171 chr3L 8295790 intergenic CG7201 - chr3L 8295876 intergenic not near genes chr3L 8295961 intergenic not near genes chr3L_13_8295001 chr3L_8295001 RAL-879 478 chr3L 8579869 8579877 chr3L 8579929 8579951 6 64 2.0 1.0 1.5 2.4 82 chr3L 8579869 intron CG43078 + chr3L 8579910 intron CG43078 + chr3L 8579951 intron CG43078 + chr3L_6_8575001 chr3L_8575001 RAL-879 479 chr3L 8824570 8824592 chr3L 8824657 8824680 6 84 3.5 1.5 2.5 1.7 110 chr3L 8824570 intergenic not near genes chr3L 8824625 intergenic not near genes chr3L 8824680 intergenic not near genes chr3L_6_8820001 chr3L_8820001 RAL-879 480 chr3L 9003944 9003976 chr3L 9004029 9004061 12 77 2.0 2.0 2.0 4.0 117 chr3L 9003944 intergenic not near genes chr3L 9004002 intergenic not near genes chr3L 9004061 intergenic not near genes chr3L_12_9000001 chr3L_9000001 RAL-879 481 chr3L 9024508 9024536 chr3L 9024585 9024615 5 79 1.0 1.5 1.2 2.3 107 chr3L 9024508 intergenic not near genes chr3L 9024562 intergenic not near genes chr3L 9024615 intergenic not near genes chr3L_5_9020001 chr3L_9020001 RAL-879 482 chr3L 9076928 9076958 chr3L 9084487 9084497 412 9 7555 5.0 4.0 4.5 1.6 7569 chr3L 9076928 exon Tequila + chr3L 9080712 intron Tequila + chr3L 9084497 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-879 483 chr3L 9348465 9348487 chr3L 9348967 9348974 8 498 4.0 0.5 2.2 2.5 509 chr3L 9348465 intergenic PGRP-LC + chr3L 9348720 intergenic PGRP-LC + chr3L 9348974 intergenic not near genes chr3L_8_9345001 chr3L_9345001 RAL-879 484 chr3L 9501716 9501730 chr3L 9502184 9502216 roo 8 480 4.0 2.5 3.2 1.9 500 chr3L 9501716 intron path - chr3L 9501966 intron path - chr3L 9502216 intron path - chr3L_8_9500001 chr3L_9500001 RAL-879 485 chr3L 9575921 9575949 chr3L 9580985 9580995 jockey 10 5063 1.0 4.5 2.8 2.6 5074 chr3L 9575921 intron CG42673 + chr3L 9578458 intron CG42673 + chr3L 9580995 intron CG42673 + chr3L_10_9575001 chr3L_9575001 RAL-879 486 chr3L 9761141 9761169 chr3L 9761279 9761308 8 130 2.5 3.0 2.8 2.1 167 chr3L 9761141 5` UTR CR45407 + chr3L 9761224 5` UTR CR45407 + chr3L 9761308 5` UTR CR45407 + chr3L_8_9760001 chr3L_9760001 RAL-879 487 chr3L 9834764 9834780 chr3L 9834837 9834840 6 77 2.5 1.5 2.0 2.0 76 chr3L 9834764 3` UTR I-2 - chr3L 9834802 3` UTR I-2 - chr3L 9834840 3` UTR I-2 - chr3L_6_9830001 chr3L_9830001 RAL-879 488 chr3L 10191288 10191315 chr3L 10191396 10191426 5 106 3.0 3.5 3.2 1.2 138 chr3L 10191288 intron ect - chr3L 10191357 intron ect - chr3L 10191426 intron ect - chr3L_5_10190001 chr3L_10190001 RAL-879 489 chr3L 10219783 10219809 chr3L 10220295 10220319 8 509 3.0 4.0 3.5 1.8 536 chr3L 10219783 exon CG32055 - chr3L 10220051 exon CG32055 - chr3L 10220319 intergenic CG32055 -,scramb1 - chr3L_8_10220001 chr3L_10220001 RAL-879 490 chr3L 10308761 10308771 chr3L 10308830 10308848 7 74 3.5 4.0 3.8 1.5 87 chr3L 10308761 intergenic not near genes chr3L 10308804 intergenic not near genes chr3L 10308848 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-879 491 chr3L 10372728 10372751 chr3L 10374615 10374643 4 1890 9.0 11.0 10.0 0.4 1915 chr3L 10372728 intergenic not near genes chr3L 10373686 intergenic not near genes chr3L 10374643 intergenic not near genes chr3L_4_10370001 chr3L_10370001 RAL-879 492 chr3L 10480228 10480243 chr3L 10480558 10480576 4 331 0.0 3.5 1.8 1.4 348 chr3L 10480228 intergenic not near genes chr3L 10480402 intergenic not near genes chr3L 10480576 intergenic not near genes chr3L_4_10480001 chr3L_10480001 RAL-879 493 chr3L 10762852 10762864 chr3L 10762913 10762922 4 61 2.5 0.5 1.5 1.6 70 chr3L 10762852 intergenic not near genes chr3L 10762887 intergenic not near genes chr3L 10762922 intergenic not near genes chr3L_4_10760001 chr3L_10760001 RAL-879 494 chr3L 11105299 11105327 chr3L 11107010 11107024 X-element 4 1703 2.0 1.5 1.8 1.4 1725 chr3L 11105299 intergenic not near genes chr3L 11106162 intergenic not near genes chr3L 11107024 3` UTR CG32073 - chr3L_4_11105001 chr3L_11105001 RAL-879 495 chr3L 11127929 11127953 chr3L 11128031 11128055 7 100 3.5 1.0 2.2 2.2 126 chr3L 11127929 intron CG42575 + chr3L 11127992 intron CG42575 + chr3L 11128055 intron CG42575 + chr3L_7_11125001 chr3L_11125001 RAL-879 496 chr3L 11135779 11135806 chr3L 11135863 11135891 7 81 0.0 4.0 2.0 2.3 112 chr3L 11135779 intergenic CG32082 +,CG14143 + chr3L 11135835 intergenic CG32082 +,CG14143 + chr3L 11135891 intergenic CG32082 +,CG14143 + chr3L_7_11135001 chr3L_11135001 RAL-879 497 chr3L 11263660 11263681 chr3L 11263760 11263782 5 98 4.0 0.0 2.0 1.7 122 chr3L 11263660 intergenic not near genes chr3L 11263721 intergenic not near genes chr3L 11263782 intergenic not near genes chr3L_5_11260001 chr3L_11260001 RAL-879 498 chr3L 11276265 11276283 chr3L 11276337 11276361 5 76 1.5 1.0 1.2 2.3 96 chr3L 11276265 intergenic not near genes chr3L 11276313 intergenic not near genes chr3L 11276361 intergenic not near genes chr3L_5_11275001 chr3L_11275001 RAL-879 499 chr3L 11290624 11290657 chr3L 11290947 11290966 12 318 1.5 1.5 1.5 4.8 342 chr3L 11290624 intron CG6175 - chr3L 11290795 intron CG6175 - chr3L 11290966 intron CG6175 - chr3L_12_11290001 chr3L_11290001 RAL-879 500 chr3L 11431204 11431217 chr3L 11431422 11431429 4 220 1.0 2.5 1.8 1.4 225 chr3L 11431204 intergenic not near genes chr3L 11431316 intergenic not near genes chr3L 11431429 intergenic not near genes chr3L_4_11430001 chr3L_11430001 RAL-879 501 chr3L 11564800 11564813 chr3L 11572407 11572434 412 4 7617 0.5 3.5 2.0 1.3 7634 chr3L 11564800 exon CG33267 + chr3L 11568617 intron CG33267 + chr3L 11572434 exon CG33267 + chr3L_4_11565001 chr3L_11565001 RAL-879 502 chr3L 11588733 11588746 chr3L 11588889 11588896 7 154 2.0 3.0 2.5 2.0 163 chr3L 11588733 intergenic not near genes chr3L 11588814 intergenic not near genes chr3L 11588896 intergenic not near genes chr3L_7_11585001 chr3L_11585001 RAL-879 503 chr3L 11588748 11588758 chr3L 11588888 11588897 4 147 1.5 2.5 2.0 1.3 149 chr3L 11588748 intergenic not near genes chr3L 11588822 intergenic not near genes chr3L 11588897 intergenic not near genes chr3L_4_11585001 chr3L_11585001 RAL-879 504 chr3L 11653839 11653856 chr3L 11653902 11653909 4 66 1.5 2.5 2.0 1.3 70 chr3L 11653839 intron CG32085 - chr3L 11653874 intron CG32085 - chr3L 11653909 intron CG32085 - chr3L_4_11650001 chr3L_11650001 RAL-879 505 chr3L 11729696 11729705 chr3L 11729752 11729781 4 66 2.0 1.5 1.8 1.4 85 chr3L 11729696 intron CG32088 + chr3L 11729738 intron CG32088 + chr3L 11729781 exon CG32088 + chr3L_4_11725001 chr3L_11725001 RAL-879 506 chr3L 11740147 11740155 chr3L 11740229 11740234 4 83 6.5 5.0 5.8 0.6 87 chr3L 11740147 intron CG6024 - chr3L 11740190 intron CG6024 - chr3L 11740234 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-879 507 chr3L 11744030 11744037 chr3L 11744119 11744126 4 93 2.5 0.5 1.5 1.6 96 chr3L 11744030 intron CG6024 - chr3L 11744078 intron CG6024 - chr3L 11744126 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-879 508 chr3L 11811457 11811486 chr3L 11811535 11811564 4 78 2.0 2.5 2.2 1.2 107 chr3L 11811457 intron CG42255 - chr3L 11811510 intron CG42255 - chr3L 11811564 exon CG42255 - chr3L_4_11810001 chr3L_11810001 RAL-879 509 chr3L 11850145 11850168 chr3L 11850237 11850263 4 90 4.0 0.0 2.0 1.3 118 chr3L 11850145 intergenic not near genes chr3L 11850204 intergenic CG44837 - chr3L 11850263 intergenic CG44837 - chr3L_4_11850001 chr3L_11850001 RAL-879 510 chr3L 11854859 11854891 chr3L 11854960 11854992 4 101 0.5 1.0 0.8 2.2 133 chr3L 11854859 exon CG44837 - chr3L 11854926 intron CG44837 - chr3L 11854992 intron CG44837 - chr3L_4_11850001 chr3L_11850001 RAL-879 511 chr3L 12013921 12013938 chr3L 12014004 12014013 6 82 2.0 2.5 2.2 1.9 92 chr3L 12013921 intron rols - chr3L 12013967 intron rols - chr3L 12014013 intron rols - chr3L_6_12010001 chr3L_12010001 RAL-879 512 chr3L 12066377 12066398 chr3L 12066613 12066623 6 230 1.5 4.5 3.0 1.5 246 chr3L 12066377 intergenic not near genes chr3L 12066500 intergenic not near genes chr3L 12066623 intergenic not near genes chr3L_6_12065001 chr3L_12065001 RAL-879 513 chr3L 12300849 12300881 chr3L 12300984 12301020 5 133 4.0 6.5 5.2 0.8 171 chr3L 12300849 intergenic CR44550 + chr3L 12300934 intergenic CR44550 + chr3L 12301020 5` UTR CR44550 + chr3L_5_12300001 chr3L_12300001 RAL-879 514 chr3L 12304091 12304118 chr3L 12304167 12304192 7 74 1.5 4.5 3.0 1.8 101 chr3L 12304091 intergenic not near genes chr3L 12304142 intergenic not near genes chr3L 12304192 intergenic not near genes chr3L_7_12300001 chr3L_12300001 RAL-879 515 chr3L 12317425 12317452 chr3L 12317523 12317548 5 99 3.0 2.0 2.5 1.4 123 chr3L 12317425 intergenic not near genes chr3L 12317486 intergenic not near genes chr3L 12317548 intergenic not near genes chr3L_5_12315001 chr3L_12315001 RAL-879 516 chr3L 12369534 12369564 chr3L 12369624 12369654 7 84 0.5 2.0 1.2 3.2 120 chr3L 12369534 intron Ncc69 - chr3L 12369594 intron Ncc69 - chr3L 12369654 intron Ncc69 - chr3L_7_12365001 chr3L_12365001 RAL-879 517 chr3L 12874947 12874961 chr3L 12877218 12877253 jockey 4 2284 0.0 1.5 0.8 2.2 2306 chr3L 12874947 intergenic not near genes chr3L 12876100 intergenic not near genes chr3L 12877253 intergenic not near genes chr3L_4_12875001 chr3L_12875001 RAL-879 518 chr3L 12896240 12896256 chr3L 12896317 12896326 5 70 5.0 3.5 4.2 1.0 86 chr3L 12896240 intergenic not near genes chr3L 12896283 intergenic not near genes chr3L 12896326 intergenic not near genes chr3L_5_12895001 chr3L_12895001 RAL-879 519 chr3L 12919294 12919308 chr3L 12924739 12924777 Rt1c 9 5457 3.0 4.0 3.5 2.0 5483 chr3L 12919294 intergenic not near genes chr3L 12922036 intergenic not near genes chr3L 12924777 intergenic not near genes chr3L_9_12920001 chr3L_12920001 RAL-879 520 chr3L 12957797 12957816 chr3L 12962279 12962298 copia 5 4477 3.0 4.0 3.5 1.1 4501 chr3L 12957797 intergenic not near genes chr3L 12960048 intergenic not near genes chr3L 12962298 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-879 521 chr3L 13182453 13182464 chr3L 13182531 13182532 4 76 5.5 3.0 4.2 0.8 79 chr3L 13182453 intergenic not near genes chr3L 13182492 intergenic not near genes chr3L 13182532 intergenic not near genes chr3L_4_13180001 chr3L_13180001 RAL-879 522 chr3L 13267283 13267317 chr3L 13267395 13267397 5 97 0.5 1.5 1.0 2.5 114 chr3L 13267283 intron caps + chr3L 13267340 intron caps + chr3L 13267397 intron caps + chr3L_5_13265001 chr3L_13265001 RAL-879 523 chr3L 13804549 13804577 chr3L 13822833 13822844 roo 4 18276 1.5 1.0 1.2 1.8 18295 chr3L 13804549 intergenic not near genes chr3L 13813696 intergenic not near genes chr3L 13822844 intergenic not near genes chr3L_4_13810001 chr3L_13810001 RAL-879 524 chr3L 13866767 13866772 chr3L 13868452 13868458 4 1683 18.5 9.5 14.0 0.3 1691 chr3L 13866767 5` UTR CG8745 - chr3L 13867612 3` UTR dysc - chr3L 13868458 3` UTR dysc - chr3L_4_13865001 chr3L_13865001 RAL-879 525 chr3L 13911568 13911589 chr3L 13911769 13911791 6 197 0.5 2.5 1.5 2.4 223 chr3L 13911568 intron Rgl - chr3L 13911680 intron Rgl - chr3L 13911791 intron Rgl - chr3L_6_13910001 chr3L_13910001 RAL-879 526 chr3L 14059491 14059526 chr3L 14059586 14059625 4 96 2.0 0.0 1.0 2.0 134 chr3L 14059491 intron CG32138 + chr3L 14059558 intron CG32138 + chr3L 14059625 intron CG32138 + chr3L_4_14055001 chr3L_14055001 RAL-879 527 chr3L 14076294 14076314 chr3L 14076371 14076392 4 77 0.5 2.0 1.2 1.8 98 chr3L 14076294 intron btl + chr3L 14076343 intron btl + chr3L 14076392 intron btl + chr3L_4_14075001 chr3L_14075001 RAL-879 528 chr3L 14245574 14245590 chr3L 14245660 14245677 1360 7 91 6.5 1.5 4.0 1.4 103 chr3L 14245574 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245677 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-879 529 chr3L 14295995 14296016 chr3L 14296470 14296502 roo 5 479 1.5 2.5 2.0 1.7 507 chr3L 14295995 intron fz + chr3L 14296248 intron fz + chr3L 14296502 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-879 530 chr3L 14324321 14324330 chr3L 14324411 14324420 4 90 5.5 3.5 4.5 0.7 99 chr3L 14324321 intron,intron fz +,CR45025 - chr3L 14324370 intron,intron fz +,CR45025 - chr3L 14324420 intron,intron fz +,CR45025 - chr3L_4_14320001 chr3L_14320001 RAL-879 531 chr3L 14324335 14324346 chr3L 14324410 14324420 5 84 3.0 3.5 3.2 1.2 85 chr3L 14324335 intron,intron fz +,CR45025 - chr3L 14324378 intron,intron fz +,CR45025 - chr3L 14324420 intron,intron fz +,CR45025 - chr3L_5_14320001 chr3L_14320001 RAL-879 532 chr3L 14331465 14331482 chr3L 14331548 14331548 4 77 3.5 1.0 2.2 1.2 83 chr3L 14331465 intron fz + chr3L 14331506 intron fz + chr3L 14331548 intron fz + chr3L_4_14330001 chr3L_14330001 RAL-879 533 chr3L 14332209 14332227 chr3L 14332320 14332343 6 120 3.0 1.5 2.2 1.9 134 chr3L 14332209 intron fz + chr3L 14332276 intron fz + chr3L 14332343 intron fz + chr3L_6_14330001 chr3L_14330001 RAL-879 534 chr3L 14394603 14394613 chr3L 14394905 14394919 4 306 0.5 6.0 3.2 1.0 316 chr3L 14394603 intergenic not near genes chr3L 14394761 intergenic not near genes chr3L 14394919 intergenic not near genes chr3L_4_14390001 chr3L_14390001 RAL-879 535 chr3L 14599399 14599410 chr3L 14599457 14599476 5 60 2.0 5.0 3.5 1.1 77 chr3L 14599399 5` UTR HGTX - chr3L 14599438 5` UTR HGTX - chr3L 14599476 5` UTR HGTX - chr3L_5_14595001 chr3L_14595001 RAL-879 536 chr3L 14633386 14633398 chr3L 14633477 14633482 4 94 1.5 0.5 1.0 2.0 96 chr3L 14633386 intron dlp + chr3L 14633434 intron dlp + chr3L 14633482 intron dlp + chr3L_4_14630001 chr3L_14630001 RAL-879 537 chr3L 14721182 14721207 chr3L 14723025 14723042 Rt1c 6 1840 5.0 4.5 4.8 1.0 1860 chr3L 14721182 intron ome + chr3L 14722112 intron ome + chr3L 14723042 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-879 538 chr3L 14725618 14725624 chr3L 14728594 14728615 Doc 4 2988 2.0 3.5 2.8 1.1 2997 chr3L 14725618 intron ome + chr3L 14727116 intron ome + chr3L 14728615 intron ome + chr3L_4_14725001 chr3L_14725001 RAL-879 539 chr3L 14840376 14840392 chr3L 14840465 14840491 5 96 1.0 3.5 2.2 1.6 115 chr3L 14840376 intron CG17839 + chr3L 14840434 intron CG17839 + chr3L 14840491 intron CG17839 + chr3L_5_14840001 chr3L_14840001 RAL-879 540 chr3L 14922108 14922128 chr3L 14922211 14922233 4 104 2.0 0.0 1.0 2.0 125 chr3L 14922108 intron DCX-EMAP + chr3L 14922170 intron DCX-EMAP + chr3L 14922233 intron DCX-EMAP + chr3L_4_14920001 chr3L_14920001 RAL-879 541 chr3L 14993473 14993495 chr3L 14993565 14993590 5 95 6.0 2.5 4.2 1.0 117 chr3L 14993473 intron Zip71B + chr3L 14993532 intron Zip71B + chr3L 14993590 intron Zip71B + chr3L_5_14990001 chr3L_14990001 RAL-879 542 chr3L 15085058 15085082 chr3L 15086223 15086248 1360 5 1155 2.5 3.0 2.8 1.3 1190 chr3L 15085058 intron cp309 - chr3L 15085653 intron cp309 - chr3L 15086248 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-879 543 chr3L 15151224 15151235 chr3L 15151404 15151419 4 181 1.0 0.5 0.8 2.2 195 chr3L 15151224 intron FucTA + chr3L 15151322 intron FucTA + chr3L 15151419 intron FucTA + chr3L_4_15150001 chr3L_15150001 RAL-879 544 chr3L 15179870 15179889 chr3L 15179941 15179968 5 76 2.0 7.5 4.8 0.9 98 chr3L 15179870 intergenic not near genes chr3L 15179919 intergenic not near genes chr3L 15179968 intergenic not near genes chr3L_5_15175001 chr3L_15175001 RAL-879 545 chr3L 15466038 15466134 chr3L 15466120 15466226 7 91 0.0 0.0 0.0 7.0 188 chr3L 15466038 intergenic not near genes chr3L 15466132 intergenic not near genes chr3L 15466226 intergenic not near genes chr3L_7_15465001 chr3L_15465001 RAL-879 546 chr3L 15482436 15482444 chr3L 15482510 15482536 4 81 2.5 2.0 2.2 1.2 100 chr3L 15482436 intergenic not near genes chr3L 15482486 intergenic not near genes chr3L 15482536 intergenic not near genes chr3L_4_15480001 chr3L_15480001 RAL-879 547 chr3L 15809189 15809197 chr3L 15809249 15809281 4 78 1.5 2.0 1.8 1.4 92 chr3L 15809189 intergenic CG13445 +,CG6244 + chr3L 15809235 intergenic CG13445 +,CG6244 + chr3L 15809281 intergenic CG13445 +,CG6244 + chr3L_4_15805001 chr3L_15805001 RAL-879 548 chr3L 15948765 15948778 chr3L 15948828 15948829 6 61 3.0 3.0 3.0 1.5 64 chr3L 15948765 intron Pka-C3 - chr3L 15948797 intron Pka-C3 - chr3L 15948829 intron Pka-C3 - chr3L_6_15945001 chr3L_15945001 RAL-879 549 chr3L 16212812 16212838 chr3L 16212903 16212922 5 88 0.5 0.0 0.2 4.2 110 chr3L 16212812 intergenic CG13073 - chr3L 16212867 intergenic CG13073 - chr3L 16212922 intergenic CG13073 - chr3L_5_16210001 chr3L_16210001 RAL-879 550 chr3L 16493991 16494010 chr3L 16494493 16494511 jockey 11 509 10.5 8.0 9.2 1.1 520 chr3L 16493991 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494251 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494511 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_11_16490001 chr3L_16490001 RAL-879 551 chr3L 16514971 16514990 chr3L 16515756 16515774 5 789 1.0 4.5 2.8 1.3 803 chr3L 16514971 intron CG43373 - chr3L 16515372 intron CG43373 - chr3L 16515774 intron CG43373 - chr3L_5_16515001 chr3L_16515001 RAL-879 552 chr3L 16520617 16520631 chr3L 16520746 16520758 4 128 2.5 3.5 3.0 1.0 141 chr3L 16520617 intron CG43373 - chr3L 16520688 intron CG43373 - chr3L 16520758 intron CG43373 - chr3L_4_16520001 chr3L_16520001 RAL-879 553 chr3L 16540052 16540086 chr3L 16540140 16540171 6 86 0.5 2.0 1.2 2.7 119 chr3L 16540052 intron CG43373 - chr3L 16540112 intron CG43373 - chr3L 16540171 intron CG43373 - chr3L_6_16540001 chr3L_16540001 RAL-879 554 chr3L 16563409 16563439 chr3L 16564873 16564882 7 1455 12.0 21.0 16.5 0.4 1473 chr3L 16563409 intergenic Mipp1 - chr3L 16564146 exon Mipp1 - chr3L 16564882 exon Mipp1 - chr3L_7_16560001 chr3L_16560001 RAL-879 555 chr3L 16616511 16616539 chr3L 16621839 16621851 297 6 5321 1.0 3.5 2.2 1.9 5340 chr3L 16616511 3` UTR Abl - chr3L 16619181 3` UTR Abl - chr3L 16621851 3` UTR Abl - chr3L_6_16615001 chr3L_16615001 RAL-879 556 chr3L 16635783 16635788 chr3L 16635844 16635852 4 71 4.5 3.5 4.0 0.8 69 chr3L 16635783 intron Abl - chr3L 16635818 intron Abl - chr3L 16635852 intron Abl - chr3L_4_16635001 chr3L_16635001 RAL-879 557 chr3L 16808050 16808070 chr3L 16808126 16808132 4 72 1.0 0.0 0.5 2.7 82 chr3L 16808050 intron nudC + chr3L 16808091 intron nudC + chr3L 16808132 intron nudC + chr3L_4_16805001 chr3L_16805001 RAL-879 558 chr3L 16818756 16818768 chr3L 16818825 16818833 4 68 5.0 4.5 4.8 0.7 77 chr3L 16818756 intron,intron nudC +,CG13024 - chr3L 16818794 intron,intron nudC +,CG13024 - chr3L 16818833 intron,intron nudC +,CG13024 - chr3L_4_16815001 chr3L_16815001 RAL-879 559 chr3L 16870876 16870898 chr3L 16870963 16870989 7 89 1.0 2.0 1.5 2.8 113 chr3L 16870876 intron Lmpt + chr3L 16870932 intron Lmpt + chr3L 16870989 intron Lmpt + chr3L_7_16870001 chr3L_16870001 RAL-879 560 chr3L 16873357 16873364 chr3L 16873458 16873469 4 103 4.0 5.5 4.8 0.7 112 chr3L 16873357 intron Lmpt + chr3L 16873413 intron Lmpt + chr3L 16873469 intron Lmpt + chr3L_4_16870001 chr3L_16870001 RAL-879 561 chr3L 17034941 17034965 chr3L 17035121 17035153 G2 4 180 2.0 0.0 1.0 2.0 212 chr3L 17034941 intergenic not near genes chr3L 17035047 intergenic not near genes chr3L 17035153 intergenic not near genes chr3L_4_17035001 chr3L_17035001 RAL-879 562 chr3L 17120654 17120685 chr3L 17120730 17120734 7 71 1.0 2.0 1.5 2.8 80 chr3L 17120654 intron Rbp6 - chr3L 17120694 intron Rbp6 - chr3L 17120734 intron Rbp6 - chr3L_7_17120001 chr3L_17120001 RAL-879 563 chr3L 17146966 17146982 chr3L 17147033 17147048 4 68 2.0 1.0 1.5 1.6 82 chr3L 17146966 intron Rbp6 - chr3L 17147007 intron Rbp6 - chr3L 17147048 intron Rbp6 - chr3L_4_17145001 chr3L_17145001 RAL-879 564 chr3L 17272245 17272263 chr3L 17272378 17272396 4 129 2.5 3.5 3.0 1.0 151 chr3L 17272245 intergenic not near genes chr3L 17272320 intergenic not near genes chr3L 17272396 intergenic not near genes chr3L_4_17270001 chr3L_17270001 RAL-879 565 chr3L 17517003 17517006 chr3L 17524547 17524563 412 4 7550 4.0 8.0 6.0 0.6 7560 chr3L 17517003 intron CG7564 + chr3L 17520783 intron CG7564 + chr3L 17524563 3` UTR CG7564 + chr3L_4_17520001 chr3L_17520001 RAL-879 566 chr3L 17758034 17758060 chr3L 17758110 17758136 5 73 1.0 1.5 1.2 2.3 102 chr3L 17758034 intron,intron Adgf-A -,Msi - chr3L 17758085 intron,intron Adgf-A -,Msi - chr3L 17758136 intron,intron,5` UTR Adgf-A -,Msi -,CG32182 + chr3L_5_17755001 chr3L_17755001 RAL-879 567 chr3L 17790458 17790626 chr3L 17790594 17790891 6 178 0.5 1.5 1.0 3.0 433 chr3L 17790458 intergenic not near genes chr3L 17790674 intergenic CG42815 - chr3L 17790891 intergenic CG42815 - chr3L_6_17790001 chr3L_17790001 RAL-879 568 chr3L 17999789 17999802 chr3L 17999853 17999866 5 67 0.5 0.0 0.2 4.2 77 chr3L 17999789 intron Eip75B - chr3L 17999828 intron Eip75B - chr3L 17999866 intron Eip75B - chr3L_5_17995001 chr3L_17995001 RAL-879 569 chr3L 18106268 18106282 chr3L 18106385 18106400 4 116 3.0 0.0 1.5 1.6 132 chr3L 18106268 intergenic CG13698 -,mRpS26 + chr3L 18106334 intergenic CG13698 -,mRpS26 + chr3L 18106400 intergenic mRpS26 +,CG13698 - chr3L_4_18105001 chr3L_18105001 RAL-879 570 chr3L 18118212 18118239 chr3L 18118290 18118317 7 78 1.5 0.0 0.8 3.9 105 chr3L 18118212 3` UTR,intron CG32195 +,CG7341 + chr3L 18118264 3` UTR,intron CG32195 +,CG7341 + chr3L 18118317 3` UTR,intron CG32195 +,CG7341 + chr3L_7_18115001 chr3L_18115001 RAL-879 571 chr3L 18119664 18119678 chr3L 18119745 18119776 5 94 0.0 3.5 1.8 1.8 112 chr3L 18119664 intron CG7341 + chr3L 18119720 intron CG7341 + chr3L 18119776 intron CG7341 + chr3L_5_18115001 chr3L_18115001 RAL-879 572 chr3L 18223173 18223189 chr3L 18223256 18223261 5 81 1.5 1.5 1.5 2.0 88 chr3L 18223173 intergenic not near genes chr3L 18223217 intergenic not near genes chr3L 18223261 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-879 573 chr3L 18772414 18772438 chr3L 18781088 18781114 roo 5 8674 4.0 1.5 2.8 1.3 8700 chr3L 18772414 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781114 intron ftz-f1 - chr3L_5_18775001 chr3L_18775001 RAL-879 574 chr3L 18833794 18833812 chr3L 18834946 18834976 1360 5 1158 0.5 3.5 2.0 1.7 1182 chr3L 18833794 intron Indy - chr3L 18834385 intron Indy - chr3L 18834976 intron Indy - chr3L_5_18830001 chr3L_18830001 RAL-879 575 chr3L 19008846 19008875 chr3L 19009184 19009205 jockey 8 333 3.5 10.0 6.8 1.0 359 chr3L 19008846 intron nkd - chr3L 19009026 intron nkd - chr3L 19009205 intron nkd - chr3L_8_19005001 chr3L_19005001 RAL-879 576 chr3L 19208063 19208079 chr3L 19209430 19209451 Doc 4 1370 3.0 4.5 3.8 0.8 1388 chr3L 19208063 intron fz2 - chr3L 19208757 intron fz2 - chr3L 19209451 intron fz2 - chr3L_4_19205001 chr3L_19205001 RAL-879 577 chr3L 19452127 19452146 chr3L 19452293 19452305 4 164 3.5 1.0 2.2 1.2 178 chr3L 19452127 intergenic not near genes chr3L 19452216 intergenic not near genes chr3L 19452305 intergenic not near genes chr3L_4_19450001 chr3L_19450001 RAL-879 578 chr3L 19664326 19664346 chr3L 19664400 19664427 4 79 2.5 1.5 2.0 1.3 101 chr3L 19664326 intergenic tey - chr3L 19664376 intergenic tey - chr3L 19664427 intergenic tey - chr3L_4_19660001 chr3L_19660001 RAL-879 579 chr3L 19861823 19861851 chr3L 19863611 19863620 S-element 7 1781 4.0 1.5 2.8 1.8 1797 chr3L 19861823 5` UTR CR45433 + chr3L 19862722 intergenic not near genes chr3L 19863620 intergenic not near genes chr3L_7_19860001 chr3L_19860001 RAL-879 580 chr3L 19940723 19940745 chr3L 19940811 19940835 6 86 1.0 4.5 2.8 1.6 112 chr3L 19940723 intron Ac76E + chr3L 19940779 intron Ac76E + chr3L 19940835 intron Ac76E + chr3L_6_19940001 chr3L_19940001 RAL-879 581 chr3L 19961284 19961298 chr3L 19961495 19961509 5 208 5.0 5.0 5.0 0.8 225 chr3L 19961284 intron Ac76E + chr3L 19961396 intron Ac76E + chr3L 19961509 intron Ac76E + chr3L_5_19960001 chr3L_19960001 RAL-879 582 chr3L 20056268 20056287 chr3L 20056358 20056377 6 89 3.0 5.0 4.0 1.2 109 chr3L 20056268 intergenic not near genes chr3L 20056322 intergenic not near genes chr3L 20056377 intergenic not near genes chr3L_6_20055001 chr3L_20055001 RAL-879 583 chr3L 20096269 20096279 chr3L 20096376 20096387 4 108 2.0 2.5 2.2 1.2 118 chr3L 20096269 intergenic not near genes chr3L 20096328 intergenic not near genes chr3L 20096387 intergenic not near genes chr3L_4_20095001 chr3L_20095001 RAL-879 584 chr3L 20257333 20257352 chr3L 20258453 20258472 pogo 5 1116 0.5 2.5 1.5 2.0 1139 chr3L 20257333 intron rdgC + chr3L 20257902 intron rdgC + chr3L 20258472 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-879 585 chr3L 20257354 20257362 chr3L 20258452 20258482 pogo 5 1108 0.5 2.0 1.2 2.3 1128 chr3L 20257354 intron rdgC + chr3L 20257918 intron rdgC + chr3L 20258482 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-879 586 chr3L 20349721 20349739 chr3L 20349792 20349819 7 81 4.0 1.5 2.8 1.8 98 chr3L 20349721 intron eRF1 + chr3L 20349770 intron eRF1 + chr3L 20349819 intron eRF1 + chr3L_7_20345001 chr3L_20345001 RAL-879 587 chr3L 20487665 20487674 chr3L 20488115 20488125 INE-1 5 450 5.5 1.5 3.5 1.1 460 chr3L 20487665 intron ZnT77C - chr3L 20487895 intron ZnT77C - chr3L 20488125 intron ZnT77C - chr3L_5_20485001 chr3L_20485001 RAL-879 588 chr3L 20624612 20624644 chr3L 20624696 20624704 8 80 2.5 4.5 3.5 1.8 92 chr3L 20624612 intergenic CR44684 - chr3L 20624658 intergenic CR44684 - chr3L 20624704 intergenic CR44684 - chr3L_8_20620001 chr3L_20620001 RAL-879 589 chr3L 20710762 20710789 chr3L 20710834 20710864 5 75 1.5 3.0 2.2 1.6 102 chr3L 20710762 intergenic not near genes chr3L 20710813 intergenic not near genes chr3L 20710864 intergenic not near genes chr3L_5_20710001 chr3L_20710001 RAL-879 590 chr3L 21014923 21014946 chr3L 21023396 21023405 Tirant 8 8470 3.0 4.0 3.5 1.8 8482 chr3L 21014923 intron skd - chr3L 21019164 intron skd - chr3L 21023405 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-879 591 chr3L 21151862 21151893 chr3L 21156946 21156977 flea 8 5081 1.5 0.0 0.8 4.4 5115 chr3L 21151862 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156977 intron Ac78C - chr3L_8_21150001 chr3L_21150001 RAL-879 592 chr3L 21160976 21160995 chr3L 21161057 21161069 13 86 3.0 1.0 2.0 4.3 93 chr3L 21160976 5` UTR Ac78C - chr3L 21161022 intron Ac78C - chr3L 21161069 intron Ac78C - chr3L_13_21160001 chr3L_21160001 RAL-879 593 chr3L 21406997 21407023 chr3L 21407074 21407094 6 75 1.5 2.0 1.8 2.1 97 chr3L 21406997 intron rgn + chr3L 21407046 intron rgn + chr3L 21407094 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-879 594 chr3L 21415153 21415162 chr3L 21415236 21415244 4 82 4.0 7.5 5.8 0.6 91 chr3L 21415153 intron rgn + chr3L 21415198 intron rgn + chr3L 21415244 intron rgn + chr3L_4_21415001 chr3L_21415001 RAL-879 595 chr3L 21415541 21415561 chr3L 21415606 21415639 8 73 2.0 1.5 1.8 2.9 98 chr3L 21415541 intron rgn + chr3L 21415590 intron rgn + chr3L 21415639 intron rgn + chr3L_8_21415001 chr3L_21415001 RAL-879 596 chr3L 21739348 21739376 chr3L 21739435 21739454 11 85 1.0 1.5 1.2 5.0 106 chr3L 21739348 intergenic CG14566 - chr3L 21739401 intergenic CG14566 - chr3L 21739454 intergenic CG14566 - chr3L_11_21735001 chr3L_21735001 RAL-879 597 chr3L 21905492 21905513 chr3L 21905590 21905614 7 96 3.5 4.5 4.0 1.4 122 chr3L 21905492 intron mub + chr3L 21905553 intron mub + chr3L 21905614 intron mub + chr3L_7_21905001 chr3L_21905001 RAL-879 598 chr3L 21966498 21966506 chr3L 21966555 21966588 5 74 2.5 3.5 3.0 1.2 90 chr3L 21966498 intron CS-2 + chr3L 21966543 intron CS-2 + chr3L 21966588 intron CS-2 + chr3L_5_21965001 chr3L_21965001 RAL-879 599 chr3L 21970802 21970837 chr3L 21970893 21970919 8 82 1.0 4.5 2.8 2.1 117 chr3L 21970802 intergenic not near genes chr3L 21970860 intergenic not near genes chr3L 21970919 intergenic not near genes chr3L_8_21970001 chr3L_21970001 RAL-879 600 chr3L 22008855 22008881 chr3L 22008924 22008946 11 63 3.5 2.5 3.0 2.8 91 chr3L 22008855 intergenic not near genes chr3L 22008900 intergenic not near genes chr3L 22008946 intergenic not near genes chr3L_11_22005001 chr3L_22005001 RAL-879 601 chr3L 22099697 22099703 chr3L 22105867 22105889 3S18 4 6179 2.5 2.0 2.2 1.2 6192 chr3L 22099697 intergenic not near genes chr3L 22102793 intergenic not near genes chr3L 22105889 intergenic not near genes chr3L_4_22100001 chr3L_22100001 RAL-879 602 chr3L 22169457 22169489 chr3L 22169546 22169573 6 86 3.0 2.5 2.8 1.6 116 chr3L 22169457 intron olf413 + chr3L 22169515 intron olf413 + chr3L 22169573 intron olf413 + chr3L_6_22165001 chr3L_22165001 RAL-879 603 chr3L 22477053 22477085 chr3L 22477144 22477173 8 81 1.0 2.5 1.8 2.9 120 chr3L 22477053 intergenic not near genes chr3L 22477113 intergenic not near genes chr3L 22477173 intergenic not near genes chr3L_8_22475001 chr3L_22475001 RAL-879 604 chr3L 22487121 22487153 chr3L 22487214 22487242 8 87 4.5 3.0 3.8 1.7 121 chr3L 22487121 intergenic not near genes chr3L 22487182 intergenic not near genes chr3L 22487242 intergenic not near genes chr3L_8_22485001 chr3L_22485001 RAL-879 605 chr3L 22555769 22555791 chr3L 22563239 22563239 blood 4 7461 1.0 1.0 1.0 2.0 7470 chr3L 22555769 intergenic not near genes chr3L 22559504 intergenic not near genes chr3L 22563239 intergenic not near genes chr3L_4_22555001 chr3L_22555001 RAL-879 606 chr3L 22577625 22577638 chr3L 22582402 22582422 Doc 5 4784 5.5 3.5 4.5 0.9 4797 chr3L 22577625 intergenic not near genes chr3L 22580024 intergenic not near genes chr3L 22582422 3` UTR CG14459 - chr3L_5_22580001 chr3L_22580001 RAL-879 607 chr3L 22617190 22617222 chr3L 22624642 22624643 blood 4 7444 1.5 1.5 1.5 1.6 7453 chr3L 22617190 intron CG14459 - chr3L 22620916 intron CG14459 - chr3L 22624643 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-879 608 chr3L 22675626 22675637 chr3L 22675711 22675713 6 86 4.5 1.5 3.0 1.5 87 chr3L 22675626 intron CG14457 + chr3L 22675670 intron CG14457 + chr3L 22675713 intron CG14457 + chr3L_6_22675001 chr3L_22675001 RAL-879 609 chr3L 22761385 22761418 chr3L 22766819 22766852 Ivk 10 5430 0.5 4.0 2.2 3.1 5467 chr3L 22761385 intron SPoCk + chr3L 22764118 intron SPoCk + chr3L 22766852 intron SPoCk + chr3L_10_22760001 chr3L_22760001 RAL-879 610 chr3L 22853482 22853723 chr3L 22853552 22853798 7 80 2.0 4.0 3.0 1.8 316 chr3L 22853482 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853640 5` UTR CR43426 + chr3L 22853798 5` UTR CR43426 + chr3L_7_22850001 chr3L_22850001 RAL-879 611 chr3L 22865989 22866011 chr3L 22867116 22867143 Doc 7 1124 3.5 2.5 3.0 1.8 1154 chr3L 22865989 intron CG33170 + chr3L 22866566 intron CG33170 + chr3L 22867143 intron CG33170 + chr3L_7_22865001 chr3L_22865001 RAL-879 612 chr3L 22901100 22901129 chr3L 22903994 22904003 6 2877 14.0 18.5 16.2 0.3 2903 chr3L 22901100 intergenic not near genes chr3L 22902552 exon BoYb + chr3L 22904003 exon BoYb + chr3L_6_22900001 chr3L_22900001 RAL-879 613 chr3L 22909018 22909052 chr3L 22909109 22909132 6 86 1.0 3.5 2.2 1.9 114 chr3L 22909018 intergenic CR45661 + chr3L 22909075 intergenic CR45661 + chr3L 22909132 intergenic CR45661 + chr3L_6_22905001 chr3L_22905001 RAL-879 614 chr3L 23182260 23182294 chr3L 23182374 23182407 5 106 2.0 3.5 2.8 1.3 147 chr3L 23182260 intron CG34031 + chr3L 23182334 intron CG34031 + chr3L 23182407 intron CG34031 + chr3L_5_23180001 chr3L_23180001 RAL-879 615 chr3L 23470371 23470391 chr3L 23470621 23470636 4 248 3.0 4.0 3.5 0.9 265 chr3L 23470371 intergenic not near genes chr3L 23470504 intergenic not near genes chr3L 23470636 intergenic not near genes chr3L_4_23470001 chr3L_23470001 RAL-879 616 chr3L 24168789 24168817 chr3L 24176115 24176120 ZAM 8 7315 4.5 4.0 4.2 1.5 7331 chr3L 24168789 intron Snap25 + chr3L 24172454 intron Snap25 + chr3L 24176120 intron Snap25 + chr3L_8_24170001 chr3L_24170001 RAL-879 617 chr3R 1521175 1521183 chr3R 1521240 1521267 5 74 6.5 6.0 6.2 0.7 92 chr3R 1521175 intergenic not near genes chr3R 1521221 intergenic not near genes chr3R 1521267 intergenic not near genes chr3R_5_1520001 chr3R_1520001 RAL-879 618 chr3R 4161539 4161569 chr3R 4161616 4161620 6 69 1.0 1.5 1.2 2.7 81 chr3R 4161539 3` UTR CG40198 - chr3R 4161580 3` UTR CG40198 - chr3R 4161620 exon CG40198 - chr3R_6_4160001 chr3R_4160001 RAL-879 619 chr3R 4408414 4408427 chr3R 4412712 4412717 Juan 4 4299 6.0 1.5 3.8 0.8 4303 chr3R 4408414 intron CG32944 - chr3R 4410566 intron CG32944 - chr3R 4412717 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-879 620 chr3R 4682762 4682783 chr3R 4682832 4682857 5 75 4.0 3.0 3.5 1.1 95 chr3R 4682762 intron CG43427 + chr3R 4682810 intron CG43427 + chr3R 4682857 intron CG43427 + chr3R_5_4680001 chr3R_4680001 RAL-879 621 chr3R 4753254 4753278 chr3R 4757538 4757558 F-element 12 4290 4.0 4.5 4.2 2.3 4304 chr3R 4753254 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757558 intron,exon atms +,CG44098 - chr3R_12_4755001 chr3R_4755001 RAL-879 622 chr3R 4769162 4769188 chr3R 4769240 4769266 5 77 2.5 2.0 2.2 1.6 104 chr3R 4769162 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_5_4765001 chr3R_4765001 RAL-879 623 chr3R 4861571 4861591 chr3R 4861651 4861669 4 76 2.0 4.0 3.0 1.0 98 chr3R 4861571 intron opa + chr3R 4861620 intron opa + chr3R 4861669 intron opa + chr3R_4_4860001 chr3R_4860001 RAL-879 624 chr3R 4887489 4887511 chr3R 4894865 4894879 rover 4 7370 1.0 3.5 2.2 1.2 7390 chr3R 4887489 intergenic not near genes chr3R 4891184 intergenic not near genes chr3R 4894879 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-879 625 chr3R 4966005 4966035 chr3R 4966096 4966127 4 89 0.0 3.5 1.8 1.4 122 chr3R 4966005 intron CG1124 + chr3R 4966066 intron CG1124 + chr3R 4966127 intron CG1124 + chr3R_4_4965001 chr3R_4965001 RAL-879 626 chr3R 5045856 5045870 chr3R 5052946 5052951 HMS-Beagle 4 7090 4.0 1.5 2.8 1.1 7095 chr3R 5045856 intron CR43635 - chr3R 5049404 intergenic not near genes chr3R 5052951 intergenic CR45588 - chr3R_4_5045001 chr3R_5045001 RAL-879 627 chr3R 5067991 5068008 chr3R 5073508 5073516 mdg3 4 5514 2.0 4.5 3.2 1.0 5525 chr3R 5067991 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073516 intergenic not near genes chr3R_4_5070001 chr3R_5070001 RAL-879 628 chr3R 5191365 5191379 chr3R 5191646 5191674 6 290 23.5 19.5 21.5 0.3 309 chr3R 5191365 intron cno - chr3R 5191520 intron cno - chr3R 5191674 intron cno - chr3R_6_5190001 chr3R_5190001 RAL-879 629 chr3R 5338408 5338425 chr3R 5343583 5343594 Rt1c 4 5174 4.0 4.5 4.2 0.8 5186 chr3R 5338408 intron mtd - chr3R 5341001 intron mtd - chr3R 5343594 intron mtd - chr3R_4_5340001 chr3R_5340001 RAL-879 630 chr3R 5347629 5347648 chr3R 5347697 5347724 7 74 3.5 3.5 3.5 1.6 95 chr3R 5347629 intron mtd - chr3R 5347676 intron mtd - chr3R 5347724 intron mtd - chr3R_7_5345001 chr3R_5345001 RAL-879 631 chr3R 5385980 5386001 chr3R 5386147 5386155 6 163 6.0 4.0 5.0 1.0 175 chr3R 5385980 intron kkv - chr3R 5386068 intron kkv - chr3R 5386155 intron kkv - chr3R_6_5385001 chr3R_5385001 RAL-879 632 chr3R 5463914 5463930 chr3R 5464033 5464062 6 124 3.5 5.5 4.5 1.1 148 chr3R 5463914 intron PEK - chr3R 5463988 intron PEK - chr3R 5464062 intron PEK - chr3R_6_5460001 chr3R_5460001 RAL-879 633 chr3R 5515136 5515157 chr3R 5515213 5515234 6 75 2.5 2.0 2.2 1.9 98 chr3R 5515136 intron Nmdar1 - chr3R 5515185 intron Nmdar1 - chr3R 5515234 intron Nmdar1 - chr3R_6_5515001 chr3R_5515001 RAL-879 634 chr3R 5746014 5746046 chr3R 5746254 5746264 pogo 10 236 3.0 5.0 4.0 2.0 250 chr3R 5746014 3` UTR Madm + chr3R 5746139 3` UTR Madm + chr3R 5746264 3` UTR Madm + chr3R_10_5745001 chr3R_5745001 RAL-879 635 chr3R 5763055 5763064 chr3R 5763146 5763153 4 90 2.5 4.0 3.2 1.0 98 chr3R 5763055 intron CG2082 - chr3R 5763104 intron CG2082 - chr3R 5763153 intron CG2082 - chr3R_4_5760001 chr3R_5760001 RAL-879 636 chr3R 5772382 5772407 chr3R 5772539 5772543 7 152 1.5 3.5 2.5 2.0 161 chr3R 5772382 intron CG2082 - chr3R 5772462 intron CG2082 - chr3R 5772543 intron CG2082 - chr3R_7_5770001 chr3R_5770001 RAL-879 637 chr3R 5809114 5809142 chr3R 5809354 5809383 pogo 6 241 2.5 5.0 3.8 1.2 269 chr3R 5809114 3` UTR CG11000 + chr3R 5809248 3` UTR CG11000 + chr3R 5809383 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-879 638 chr3R 5840839 5840852 chr3R 5840909 5840941 5 74 6.0 3.5 4.8 0.9 102 chr3R 5840839 intergenic CG1213 + chr3R 5840890 intergenic CG1213 + chr3R 5840941 intergenic CG1213 + chr3R_5_5840001 chr3R_5840001 RAL-879 639 chr3R 5882679 5882696 chr3R 5882835 5882851 5 155 2.0 2.5 2.2 1.6 172 chr3R 5882679 intron CG34113 - chr3R 5882765 intron CG34113 - chr3R 5882851 intron CG34113 - chr3R_5_5880001 chr3R_5880001 RAL-879 640 chr3R 6048452 6048477 chr3R 6048535 6048545 6 78 2.5 3.0 2.8 1.6 93 chr3R 6048452 intergenic not near genes chr3R 6048498 intergenic not near genes chr3R 6048545 intergenic not near genes chr3R_6_6045001 chr3R_6045001 RAL-879 641 chr3R 6206290 6206318 chr3R 6206496 6206517 BS 9 204 6.0 3.5 4.8 1.6 227 chr3R 6206290 exon Osi24 + chr3R 6206404 intron Osi24 + chr3R 6206517 intron Osi24 + chr3R_9_6205001 chr3R_6205001 RAL-879 642 chr3R 6415229 6415252 chr3R 6415325 6415333 5 90 2.0 2.0 2.0 1.7 104 chr3R 6415229 intron gpp + chr3R 6415281 intron gpp + chr3R 6415333 intron gpp + chr3R_5_6415001 chr3R_6415001 RAL-879 643 chr3R 6737497 6737523 chr3R 6739284 6739304 Doc 5 1783 2.5 2.5 2.5 1.4 1807 chr3R 6737497 intron pb - chr3R 6738400 intron pb - chr3R 6739304 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-879 644 chr3R 6773754 6773766 chr3R 6773834 6773848 4 80 8.5 6.0 7.2 0.5 94 chr3R 6773754 intron CR42721 + chr3R 6773801 intron CR42721 + chr3R 6773848 intron CR42721 + chr3R_4_6770001 chr3R_6770001 RAL-879 645 chr3R 6991183 6991199 chr3R 6991257 6991263 5 72 5.0 1.5 3.2 1.2 80 chr3R 6991183 intron Antp - chr3R 6991223 intron Antp - chr3R 6991263 intron Antp - chr3R_5_6990001 chr3R_6990001 RAL-879 646 chr3R 7092793 7092807 chr3R 7093352 7093357 7 560 3.5 3.0 3.2 1.7 564 chr3R 7092793 3` UTR CR43685 - chr3R 7093075 intron CR43685 - chr3R 7093357 3` UTR CR43685 - chr3R_7_7090001 chr3R_7090001 RAL-879 647 chr3R 7092810 7092816 chr3R 7093350 7093356 6 546 3.0 3.0 3.0 1.5 546 chr3R 7092810 3` UTR CR43685 - chr3R 7093083 intron CR43685 - chr3R 7093356 3` UTR CR43685 - chr3R_6_7090001 chr3R_7090001 RAL-879 648 chr3R 7103289 7103318 chr3R 7103364 7103371 5 64 2.5 2.0 2.2 1.6 82 chr3R 7103289 intron Alh - chr3R 7103330 intron Alh - chr3R 7103371 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-879 649 chr3R 7167395 7167408 chr3R 7167492 7167505 5 93 5.0 6.0 5.5 0.8 110 chr3R 7167395 intron sas + chr3R 7167450 intron sas + chr3R 7167505 intron sas + chr3R_5_7165001 chr3R_7165001 RAL-879 650 chr3R 7448001 7448012 chr3R 7448072 7448090 5 76 4.5 6.0 5.2 0.8 89 chr3R 7448001 intergenic not near genes chr3R 7448046 intergenic not near genes chr3R 7448090 intergenic not near genes chr3R_5_7445001 chr3R_7445001 RAL-879 651 chr3R 7655003 7655038 chr3R 7655085 7655085 9 75 1.5 4.0 2.8 2.4 82 chr3R 7655003 intergenic not near genes chr3R 7655044 intergenic not near genes chr3R 7655085 intergenic not near genes chr3R_9_7655001 chr3R_7655001 RAL-879 652 chr3R 7884665 7884700 chr3R 7884743 7884763 10 65 1.5 1.0 1.2 4.5 98 chr3R 7884665 intron CG17816 - chr3R 7884714 intron CG17816 - chr3R 7884763 intron CG17816 - chr3R_10_7880001 chr3R_7880001 RAL-879 653 chr3R 8094413 8094431 chr3R 8099718 8099736 Transpac 6 5304 4.0 1.0 2.5 1.7 5323 chr3R 8094413 intron CG7900 + chr3R 8097074 intron CG7900 + chr3R 8099736 intron CG7900 + chr3R_6_8095001 chr3R_8095001 RAL-879 654 chr3R 8339246 8339246 chr3R 21907534 21907536 6 13568288 14.0 21.5 17.8 0.3 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-879 655 chr3R 8339247 8339247 chr3R 21907534 21907536 6 13568288 14.0 21.5 17.8 0.3 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-879 656 chr3R 8552366 8552400 chr3R 8552446 8552473 11 68 0.5 3.5 2.0 3.7 107 chr3R 8552366 intergenic Or85d + chr3R 8552420 intergenic Or85d + chr3R 8552473 intergenic Or85d + chr3R_11_8550001 chr3R_8550001 RAL-879 657 chr3R 8570477 8570508 chr3R 8575113 8575119 HMS-Beagle 4 4628 4.0 2.0 3.0 1.0 4642 chr3R 8570477 intergenic not near genes chr3R 8572798 intergenic not near genes chr3R 8575119 intergenic not near genes chr3R_4_8570001 chr3R_8570001 RAL-879 658 chr3R 8601771 8601790 chr3R 8610917 8610942 roo 7 9148 4.5 1.0 2.8 1.8 9171 chr3R 8601771 intron 5-HT2B + chr3R 8606356 intron 5-HT2B + chr3R 8610942 intron 5-HT2B + chr3R_7_8605001 chr3R_8605001 RAL-879 659 chr3R 8685299 8685315 chr3R 8685399 8685415 4 100 2.0 2.0 2.0 1.3 116 chr3R 8685299 intron CR44937 - chr3R 8685357 intron CR44937 - chr3R 8685415 intron CR44937 - chr3R_4_8685001 chr3R_8685001 RAL-879 660 chr3R 8707368 8707385 chr3R 8709794 8709823 jockey 4 2428 6.5 3.0 4.8 0.7 2455 chr3R 8707368 intergenic not near genes chr3R 8708596 intergenic not near genes chr3R 8709823 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-879 661 chr3R 9036375 9036407 chr3R 9036453 9036478 5 77 5.0 0.5 2.8 1.3 103 chr3R 9036375 intron neur - chr3R 9036426 intron neur - chr3R 9036478 intron neur - chr3R_5_9035001 chr3R_9035001 RAL-879 662 chr3R 9083148 9083174 chr3R 9083227 9083236 13 77 0.5 2.5 1.5 5.2 88 chr3R 9083148 intron pum - chr3R 9083192 intron pum - chr3R 9083236 intron pum - chr3R_13_9080001 chr3R_9080001 RAL-879 663 chr3R 9101847 9101867 chr3R 9101945 9101952 5 94 0.0 5.0 2.5 1.4 105 chr3R 9101847 intron pum - chr3R 9101900 intron pum - chr3R 9101952 intron pum - chr3R_5_9100001 chr3R_9100001 RAL-879 664 chr3R 9141165 9141191 chr3R 9141248 9141270 6 80 2.0 5.0 3.5 1.3 105 chr3R 9141165 intron pum - chr3R 9141218 intron pum - chr3R 9141270 intron pum - chr3R_6_9140001 chr3R_9140001 RAL-879 665 chr3R 9317664 9317671 chr3R 9317756 9317762 6 91 0.0 3.0 1.5 2.4 98 chr3R 9317664 intron CG8861 - chr3R 9317713 intron CG8861 - chr3R 9317762 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-879 666 chr3R 9319582 9319596 chr3R 9320005 9320031 jockey 5 430 3.0 1.5 2.2 1.6 449 chr3R 9319582 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320031 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-879 667 chr3R 9425424 9425433 chr3R 9425503 9425511 5 79 5.5 4.5 5.0 0.8 87 chr3R 9425424 intron ps + chr3R 9425468 intron ps + chr3R 9425511 intron ps + chr3R_5_9425001 chr3R_9425001 RAL-879 668 chr3R 9699976 9699998 chr3R 9700065 9700076 1360 5 83 4.0 3.0 3.5 1.1 100 chr3R 9699976 intron Unc-115a - chr3R 9700026 intron Unc-115a - chr3R 9700076 intron Unc-115a - chr3R_5_9700001 chr3R_9700001 RAL-879 669 chr3R 9824511 9824534 chr3R 9824755 9824782 10 243 3.5 3.0 3.2 2.4 271 chr3R 9824511 3` UTR CR42858 - chr3R 9824646 3` UTR CR42858 - chr3R 9824782 intron CR42858 - chr3R_10_9820001 chr3R_9820001 RAL-879 670 chr3R 9836870 9836897 chr3R 9836958 9836984 6 82 3.5 3.5 3.5 1.3 114 chr3R 9836870 intron Teh1 - chr3R 9836927 intron Teh1 - chr3R 9836984 intron Teh1 - chr3R_6_9835001 chr3R_9835001 RAL-879 671 chr3R 9898795 9898811 chr3R 9898885 9898892 4 88 3.0 2.0 2.5 1.1 97 chr3R 9898795 intron Glut4EF + chr3R 9898844 intron Glut4EF + chr3R 9898892 intron Glut4EF + chr3R_4_9895001 chr3R_9895001 RAL-879 672 chr3R 10085954 10085966 chr3R 10086251 10086252 4 293 3.5 5.5 4.5 0.7 298 chr3R 10085954 intron CR45054 + chr3R 10086103 intron CR45054 + chr3R 10086252 intron CR45054 + chr3R_4_10085001 chr3R_10085001 RAL-879 673 chr3R 10085971 10085980 chr3R 10086248 10086261 4 278 3.0 4.5 3.8 0.8 290 chr3R 10085971 intron CR45054 + chr3R 10086116 intron CR45054 + chr3R 10086261 intron CR45054 + chr3R_4_10085001 chr3R_10085001 RAL-879 674 chr3R 10417478 10417504 chr3R 10417811 10417823 6 326 4.0 0.5 2.2 1.9 345 chr3R 10417478 intergenic not near genes chr3R 10417650 intergenic not near genes chr3R 10417823 intergenic not near genes chr3R_6_10415001 chr3R_10415001 RAL-879 675 chr3R 10505223 10505236 chr3R 10505546 10505552 4 323 8.5 2.0 5.2 0.6 329 chr3R 10505223 intergenic not near genes chr3R 10505388 intergenic not near genes chr3R 10505552 intergenic not near genes chr3R_4_10505001 chr3R_10505001 RAL-879 676 chr3R 10505238 10505247 chr3R 10505541 10505545 5 312 6.0 1.5 3.8 1.0 307 chr3R 10505238 intergenic not near genes chr3R 10505392 intergenic not near genes chr3R 10505545 intergenic not near genes chr3R_5_10505001 chr3R_10505001 RAL-879 677 chr3R 10531868 10531899 chr3R 10531948 10531949 5 74 3.5 2.5 3.0 1.2 81 chr3R 10531868 intron hth - chr3R 10531908 intron hth - chr3R 10531949 intron hth - chr3R_5_10530001 chr3R_10530001 RAL-879 678 chr3R 10745424 10745435 chr3R 10745511 10745522 5 85 5.5 1.0 3.2 1.2 98 chr3R 10745424 intron TkR86C - chr3R 10745473 intron TkR86C - chr3R 10745522 intron TkR86C - chr3R_5_10745001 chr3R_10745001 RAL-879 679 chr3R 10919684 10919710 chr3R 10919761 10919787 4 78 4.0 3.0 3.5 0.9 103 chr3R 10919684 intergenic not near genes chr3R 10919736 intergenic not near genes chr3R 10919787 intergenic not near genes chr3R_4_10915001 chr3R_10915001 RAL-879 680 chr3R 11085477 11085492 chr3R 11085537 11085568 5 69 0.5 2.0 1.2 2.3 91 chr3R 11085477 3` UTR CR44940 - chr3R 11085522 intergenic CR44940 - chr3R 11085568 intergenic CR44940 - chr3R_5_11085001 chr3R_11085001 RAL-879 681 chr3R 11181868 11181884 chr3R 11181983 11182012 5 118 2.5 2.5 2.5 1.4 144 chr3R 11181868 intergenic not near genes chr3R 11181940 intergenic not near genes chr3R 11182012 intergenic not near genes chr3R_5_11180001 chr3R_11180001 RAL-879 682 chr3R 11694724 11694756 chr3R 11694817 11694828 4 86 0.0 0.5 0.2 3.3 104 chr3R 11694724 intergenic Fer3 - chr3R 11694776 intergenic Fer3 - chr3R 11694828 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-879 683 chr3R 11695744 11695768 chr3R 11695825 11695843 5 75 1.5 6.0 3.8 1.0 99 chr3R 11695744 intergenic not near genes chr3R 11695794 intergenic not near genes chr3R 11695843 intergenic not near genes chr3R_5_11695001 chr3R_11695001 RAL-879 684 chr3R 11708631 11708662 chr3R 11708839 11708854 4 198 2.0 3.0 2.5 1.1 223 chr3R 11708631 intergenic not near genes chr3R 11708742 intergenic not near genes chr3R 11708854 intergenic not near genes chr3R_4_11705001 chr3R_11705001 RAL-879 685 chr3R 11834167 11834198 chr3R 11834250 11834265 8 73 3.0 3.5 3.2 1.9 98 chr3R 11834167 intron CG6959 - chr3R 11834216 intron CG6959 - chr3R 11834265 intron CG6959 - chr3R_8_11830001 chr3R_11830001 RAL-879 686 chr3R 11841061 11841101 chr3R 11846252 11846275 BS 7 5186 3.0 1.0 2.0 2.3 5214 chr3R 11841061 intron CG6959 - chr3R 11843668 intron CG6959 - chr3R 11846275 intron CG6959 - chr3R_7_11840001 chr3R_11840001 RAL-879 687 chr3R 12369212 12369238 chr3R 12369329 12369330 6 109 0.5 0.0 0.2 5.0 118 chr3R 12369212 5` UTR GstD1 - chr3R 12369271 intergenic GstD1 - chr3R 12369330 intergenic GstD1 - chr3R_6_12365001 chr3R_12365001 RAL-879 688 chr3R 12546456 12546485 chr3R 12546539 12546564 6 80 3.0 3.5 3.2 1.4 108 chr3R 12546456 intron Octbeta3R - chr3R 12546510 intron Octbeta3R - chr3R 12546564 intron Octbeta3R - chr3R_6_12545001 chr3R_12545001 RAL-879 689 chr3R 12720726 12720761 chr3R 12720896 12720904 10 162 3.5 2.5 3.0 2.5 178 chr3R 12720726 intron Men - chr3R 12720815 intron Men - chr3R 12720904 intron Men - chr3R_10_12720001 chr3R_12720001 RAL-879 690 chr3R 12735821 12735830 chr3R 12735893 12735898 5 82 0.5 0.0 0.2 4.2 77 chr3R 12735821 intergenic not near genes chr3R 12735860 intergenic not near genes chr3R 12735898 intergenic not near genes chr3R_5_12735001 chr3R_12735001 RAL-879 691 chr3R 12766410 12766436 chr3R 12766493 12766508 6 75 5.0 2.0 3.5 1.3 98 chr3R 12766410 intron beat-Vc - chr3R 12766459 intron beat-Vc - chr3R 12766508 intron beat-Vc - chr3R_6_12765001 chr3R_12765001 RAL-879 692 chr3R 12866492 12866514 chr3R 12866643 12866665 9 151 3.5 3.5 3.5 2.0 173 chr3R 12866492 intergenic not near genes chr3R 12866578 intergenic not near genes chr3R 12866665 intergenic not near genes chr3R_9_12865001 chr3R_12865001 RAL-879 693 chr3R 12885108 12885131 chr3R 12885213 12885238 4 105 1.5 0.0 0.8 2.2 130 chr3R 12885108 intergenic not near genes chr3R 12885173 intergenic not near genes chr3R 12885238 intergenic not near genes chr3R_4_12885001 chr3R_12885001 RAL-879 694 chr3R 12920174 12920182 chr3R 12925359 12925377 copia 7 5190 2.0 3.0 2.5 2.0 5203 chr3R 12920174 intron beat-Vb + chr3R 12922776 intron beat-Vb + chr3R 12925377 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-879 695 chr3R 12947292 12947318 chr3R 12947453 12947477 4 156 2.5 0.5 1.5 1.6 185 chr3R 12947292 intergenic not near genes chr3R 12947384 intergenic not near genes chr3R 12947477 intergenic not near genes chr3R_4_12945001 chr3R_12945001 RAL-879 696 chr3R 13067850 13067866 chr3R 13067930 13067945 5 79 1.5 2.5 2.0 1.7 95 chr3R 13067850 intron sim + chr3R 13067898 intron sim + chr3R 13067945 intron sim + chr3R_5_13065001 chr3R_13065001 RAL-879 697 chr3R 13138330 13138351 chr3R 13138411 13138436 5 82 1.5 1.5 1.5 2.0 106 chr3R 13138330 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138383 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138436 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-879 698 chr3R 13143041 13143065 chr3R 13148617 13148641 mdg3 5 5572 2.5 7.0 4.8 0.9 5600 chr3R 13143041 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145841 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148641 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-879 699 chr3R 13484841 13484864 chr3R 13484934 13484946 7 91 3.5 6.0 4.8 1.2 105 chr3R 13484841 intergenic not near genes chr3R 13484894 intergenic not near genes chr3R 13484946 intergenic not near genes chr3R_7_13480001 chr3R_13480001 RAL-879 700 chr3R 13525172 13525201 chr3R 13525259 13525265 10 78 1.5 2.5 2.0 3.3 93 chr3R 13525172 intergenic not near genes chr3R 13525218 intergenic not near genes chr3R 13525265 intergenic not near genes chr3R_10_13525001 chr3R_13525001 RAL-879 701 chr3R 13606707 13606734 chr3R 13606850 13606881 5 145 3.0 1.0 2.0 1.7 174 chr3R 13606707 intergenic CG9759 - chr3R 13606794 intergenic CG9759 - chr3R 13606881 intergenic CG9759 - chr3R_5_13605001 chr3R_13605001 RAL-879 702 chr3R 13672944 13672965 chr3R 13673022 13673027 5 74 3.0 0.0 1.5 2.0 83 chr3R 13672944 intron Task6 - chr3R 13672986 intron Task6 - chr3R 13673027 intron Task6 - chr3R_5_13670001 chr3R_13670001 RAL-879 703 chr3R 13692795 13692817 chr3R 13692862 13692890 4 74 4.5 3.5 4.0 0.8 95 chr3R 13692795 3` UTR flfl + chr3R 13692842 3` UTR flfl + chr3R 13692890 3` UTR flfl + chr3R_4_13690001 chr3R_13690001 RAL-879 704 chr3R 13693028 13693028 chr3R 21907534 21907535 8 8214506 8.0 21.5 14.8 0.5 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_8_17800001 chr3R_17800001 RAL-879 705 chr3R 13994319 13994324 chr3R 13994572 13994577 4 252 2.0 2.0 2.0 1.3 258 chr3R 13994319 intron rdx - chr3R 13994448 intron rdx - chr3R 13994577 intron rdx - chr3R_4_13990001 chr3R_13990001 RAL-879 706 chr3R 14021652 14021677 chr3R 14023466 14023491 S-element 4 1815 6.0 1.5 3.8 0.8 1839 chr3R 14021652 intron rdx - chr3R 14022572 intron rdx - chr3R 14023491 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-879 707 chr3R 14067144 14067156 chr3R 14067223 14067234 4 78 5.5 0.5 3.0 1.0 90 chr3R 14067144 exon foxo + chr3R 14067189 intron foxo + chr3R 14067234 intron foxo + chr3R_4_14065001 chr3R_14065001 RAL-879 708 chr3R 14077637 14077653 chr3R 14077714 14077729 4 77 2.0 3.0 2.5 1.1 92 chr3R 14077637 intron foxo + chr3R 14077683 intron foxo + chr3R 14077729 intron foxo + chr3R_4_14075001 chr3R_14075001 RAL-879 709 chr3R 14098683 14098707 chr3R 14098759 14098772 7 66 3.0 4.0 3.5 1.6 89 chr3R 14098683 intergenic not near genes chr3R 14098728 intergenic not near genes chr3R 14098772 intergenic not near genes chr3R_7_14095001 chr3R_14095001 RAL-879 710 chr3R 14169849 14169883 chr3R 14169930 14169957 7 73 0.5 3.0 1.8 2.5 108 chr3R 14169849 3` UTR Dop1R1 - chr3R 14169903 3` UTR Dop1R1 - chr3R 14169957 3` UTR Dop1R1 - chr3R_7_14165001 chr3R_14165001 RAL-879 711 chr3R 14194426 14194454 chr3R 14203575 14203598 roo 4 9145 3.0 1.0 2.0 1.3 9172 chr3R 14194426 intron Dop1R1 - chr3R 14199012 intron Dop1R1 - chr3R 14203598 intron Dop1R1 - chr3R_4_14195001 chr3R_14195001 RAL-879 712 chr3R 14220133 14220162 chr3R 14220220 14220249 7 82 5.5 3.5 4.5 1.3 116 chr3R 14220133 exon CG31326 - chr3R 14220191 exon CG31326 - chr3R 14220249 intergenic CG31326 -,CG33109 - chr3R_7_14220001 chr3R_14220001 RAL-879 713 chr3R 14364061 14364092 chr3R 14364136 14364163 4 68 3.5 2.0 2.8 1.1 102 chr3R 14364061 intron NK7.1 - chr3R 14364112 intron NK7.1 - chr3R 14364163 intron NK7.1 - chr3R_4_14360001 chr3R_14360001 RAL-879 714 chr3R 14455892 14455919 chr3R 14456002 14456025 5 108 3.0 3.0 3.0 1.2 133 chr3R 14455892 intron cv-c - chr3R 14455958 intron cv-c - chr3R 14456025 intron cv-c - chr3R_5_14455001 chr3R_14455001 RAL-879 715 chr3R 14546786 14546815 chr3R 14546868 14546871 6 78 2.5 2.5 2.5 1.7 85 chr3R 14546786 intron Pde6 - chr3R 14546828 intron Pde6 - chr3R 14546871 intron Pde6 - chr3R_6_14545001 chr3R_14545001 RAL-879 716 chr3R 14631261 14631276 chr3R 14631338 14631354 4 77 5.0 6.0 5.5 0.6 93 chr3R 14631261 intron,intron CG7886 -,Cad88C + chr3R 14631308 intron,intron CG7886 -,Cad88C + chr3R 14631354 intron,intron CG7886 -,Cad88C + chr3R_4_14630001 chr3R_14630001 RAL-879 717 chr3R 14664879 14664896 chr3R 14664956 14664956 4 72 2.0 1.0 1.5 1.6 77 chr3R 14664879 intergenic Meltrin -,BigH1 + chr3R 14664918 3` UTR Meltrin - chr3R 14664956 3` UTR Meltrin - chr3R_4_14660001 chr3R_14660001 RAL-879 718 chr3R 14898485 14898501 chr3R 14898598 14898621 4 114 3.0 3.0 3.0 1.0 136 chr3R 14898485 intergenic Nup93-2 -,CG3817 + chr3R 14898553 intergenic Nup93-2 -,CG3817 + chr3R 14898621 intergenic CG3817 +,Nup93-2 - chr3R_4_14895001 chr3R_14895001 RAL-879 719 chr3R 15132055 15132078 chr3R 15135115 15135135 Juan 5 3059 5.0 3.0 4.0 1.0 3080 chr3R 15132055 intergenic CG42788 - chr3R 15133595 intergenic not near genes chr3R 15135135 intergenic CG6912 - chr3R_5_15130001 chr3R_15130001 RAL-879 720 chr3R 15286987 15286987 chr3R 21907534 21907536 4 6620548 17.5 21.5 19.5 0.2 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-879 721 chr3R 15416272 15416284 chr3R 15416327 15416360 6 68 1.5 3.5 2.5 1.7 88 chr3R 15416272 3` UTR Atx2 + chr3R 15416316 3` UTR Atx2 + chr3R 15416360 3` UTR Atx2 + chr3R_6_15415001 chr3R_15415001 RAL-879 722 chr3R 15571256 15571494 chr3R 15571348 15571585 10 93 6.0 3.0 4.5 1.8 329 chr3R 15571256 intergenic not near genes chr3R 15571420 intergenic not near genes chr3R 15571585 intergenic not near genes chr3R_10_15570001 chr3R_15570001 RAL-879 723 chr3R 15601188 15601196 chr3R 15608696 15608717 412 5 7516 3.5 7.0 5.2 0.8 7529 chr3R 15601188 intergenic not near genes chr3R 15604952 intergenic not near genes chr3R 15608717 intergenic not near genes chr3R_5_15600001 chr3R_15600001 RAL-879 724 chr3R 15639362 15639367 chr3R 15639624 15639646 4 268 0.5 4.0 2.2 1.2 284 chr3R 15639362 intergenic not near genes chr3R 15639504 intergenic not near genes chr3R 15639646 intergenic not near genes chr3R_4_15635001 chr3R_15635001 RAL-879 725 chr3R 15709639 15709654 chr3R 15709763 15709763 4 122 2.5 1.5 2.0 1.3 124 chr3R 15709639 intergenic not near genes chr3R 15709701 intergenic not near genes chr3R 15709763 intergenic not near genes chr3R_4_15705001 chr3R_15705001 RAL-879 726 chr3R 16128446 16128467 chr3R 16128520 16128521 9 72 2.0 2.0 2.0 3.0 75 chr3R 16128446 intron Sb + chr3R 16128484 intron Sb + chr3R 16128521 intron Sb + chr3R_9_16125001 chr3R_16125001 RAL-879 727 chr3R 16246523 16246557 chr3R 16246599 16246633 6 72 0.0 5.0 2.5 1.7 110 chr3R 16246523 intron tara + chr3R 16246578 intron tara + chr3R 16246633 intron tara + chr3R_6_16245001 chr3R_16245001 RAL-879 728 chr3R 16538408 16538420 chr3R 16538563 16538565 5 151 1.5 0.5 1.0 2.5 157 chr3R 16538408 intron CG42342 + chr3R 16538486 intron CG42342 + chr3R 16538565 intron CG42342 + chr3R_5_16535001 chr3R_16535001 RAL-879 729 chr3R 16547158 16547192 chr3R 16547244 16547248 7 79 1.0 1.0 1.0 3.5 90 chr3R 16547158 intron CG42342 + chr3R 16547203 intron CG42342 + chr3R 16547248 intron CG42342 + chr3R_7_16545001 chr3R_16545001 RAL-879 730 chr3R 16725799 16725813 chr3R 16725872 16725872 6 70 2.0 4.5 3.2 1.4 73 chr3R 16725799 intron Ubx - chr3R 16725836 intron Ubx - chr3R 16725872 intron Ubx - chr3R_6_16725001 chr3R_16725001 RAL-879 731 chr3R 16756321 16756340 chr3R 16762512 16762515 diver 4 6187 4.5 3.0 3.8 0.8 6194 chr3R 16756321 intron bxd - chr3R 16759418 intron bxd - chr3R 16762515 intron bxd - chr3R_4_16755001 chr3R_16755001 RAL-879 732 chr3R 16889960 16889990 chr3R 16890037 16890048 4 71 0.5 1.5 1.0 2.0 88 chr3R 16889960 intron iab-8 - chr3R 16890004 intron iab-8 - chr3R 16890048 intron iab-8 - chr3R_4_16890001 chr3R_16890001 RAL-879 733 chr3R 17065573 17065597 chr3R 17065845 17065847 6 267 2.0 3.5 2.8 1.6 274 chr3R 17065573 intron Dad + chr3R 17065710 intron Dad + chr3R 17065847 intron Dad + chr3R_6_17065001 chr3R_17065001 RAL-879 734 chr3R 17461207 17461230 chr3R 17461287 17461300 4 78 0.5 0.5 0.5 2.7 93 chr3R 17461207 intergenic not near genes chr3R 17461254 intergenic not near genes chr3R 17461300 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-879 735 chr3R 17645704 17645724 chr3R 17645833 17645853 6 128 1.5 2.0 1.8 2.1 149 chr3R 17645704 intergenic CG43175 + chr3R 17645778 intergenic not near genes chr3R 17645853 intergenic not near genes chr3R_6_17645001 chr3R_17645001 RAL-879 736 chr3R 17925853 17925889 chr3R 17927320 17927324 hobo 11 1458 4.5 6.5 5.5 1.7 1471 chr3R 17925853 intron cpo + chr3R 17926588 intron cpo + chr3R 17927324 intron cpo + chr3R_11_17925001 chr3R_17925001 RAL-879 737 chr3R 18322805 18322814 chr3R 18323443 18323468 8 643 31.0 36.0 33.5 0.2 663 chr3R 18322805 intron CG31235 - chr3R 18323136 intron CG31235 - chr3R 18323468 intron CG31235 - chr3R_8_18320001 chr3R_18320001 RAL-879 738 chr3R 18537241 18537263 chr3R 18537325 18537347 7 80 2.5 2.5 2.5 2.0 106 chr3R 18537241 intron fru - chr3R 18537294 intron fru - chr3R 18537347 intron fru - chr3R_7_18535001 chr3R_18535001 RAL-879 739 chr3R 18606506 18606531 chr3R 18610738 18610763 F-element 6 4228 3.0 2.5 2.8 1.6 4257 chr3R 18606506 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610763 intron,intron qin +,CG14304 - chr3R_6_18605001 chr3R_18605001 RAL-879 740 chr3R 18781589 18781717 chr3R 18781671 18781787 7 75 2.5 1.5 2.0 2.3 198 chr3R 18781589 intron CG7720 - chr3R 18781688 intron CG7720 - chr3R 18781787 intron CG7720 - chr3R_7_18780001 chr3R_18780001 RAL-879 741 chr3R 18812076 18812108 chr3R 18812154 18812170 10 72 4.0 5.5 4.8 1.7 94 chr3R 18812076 intron CG18208 - chr3R 18812123 intron CG18208 - chr3R 18812170 intron CG18208 - chr3R_10_18810001 chr3R_18810001 RAL-879 742 chr3R 19201277 19201308 chr3R 19201362 19201378 6 77 0.0 3.0 1.5 2.4 101 chr3R 19201277 intergenic CG31475 + chr3R 19201328 intergenic CG31475 + chr3R 19201378 intergenic CG31475 + chr3R_6_19200001 chr3R_19200001 RAL-879 743 chr3R 19340401 19340425 chr3R 19340475 19340484 4 72 1.0 2.5 1.8 1.4 83 chr3R 19340401 intergenic not near genes chr3R 19340442 intergenic not near genes chr3R 19340484 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-879 744 chr3R 19533385 19533395 chr3R 19533454 19533471 4 73 5.5 6.0 5.8 0.6 86 chr3R 19533385 intron Dys + chr3R 19533428 intron Dys + chr3R 19533471 intron Dys + chr3R_4_19530001 chr3R_19530001 RAL-879 745 chr3R 19533398 19533404 chr3R 19533447 19533449 5 64 4.5 5.0 4.8 0.9 51 chr3R 19533398 intron Dys + chr3R 19533424 intron Dys + chr3R 19533449 intron Dys + chr3R_5_19530001 chr3R_19530001 RAL-879 746 chr3R 20041112 20041148 chr3R 20041213 20041244 4 92 1.0 1.0 1.0 2.0 132 chr3R 20041112 intron CG17193 - chr3R 20041178 intron CG17193 - chr3R 20041244 intron CG17193 - chr3R_4_20040001 chr3R_20040001 RAL-879 747 chr3R 20194836 20194856 chr3R 20196913 20196924 5 2079 7.5 21.5 14.5 0.3 2088 chr3R 20194836 intergenic not near genes chr3R 20195880 intergenic not near genes chr3R 20196924 intergenic not near genes chr3R_5_20195001 chr3R_20195001 RAL-879 748 chr3R 20195227 20195249 chr3R 20195313 20195322 4 81 3.0 4.0 3.5 0.9 95 chr3R 20195227 intergenic not near genes chr3R 20195274 intergenic not near genes chr3R 20195322 intergenic not near genes chr3R_4_20195001 chr3R_20195001 RAL-879 749 chr3R 20195251 20195257 chr3R 20195312 20195317 7 68 1.0 4.0 2.5 2.0 66 chr3R 20195251 intergenic not near genes chr3R 20195284 intergenic not near genes chr3R 20195317 intergenic not near genes chr3R_7_20195001 chr3R_20195001 RAL-879 750 chr3R 20197113 20197147 chr3R 20197190 20197212 10 71 5.5 4.0 4.8 1.7 99 chr3R 20197113 intergenic not near genes chr3R 20197162 intergenic not near genes chr3R 20197212 intergenic not near genes chr3R_10_20195001 chr3R_20195001 RAL-879 751 chr3R 20194513 20194532 chr3R 20197796 20197832 8 3288 13.5 23.0 18.2 0.4 3319 chr3R 20194513 intergenic not near genes chr3R 20196172 intergenic not near genes chr3R 20197832 intergenic not near genes chr3R_8_20195001 chr3R_20195001 RAL-879 752 chr3R 20256850 20256870 chr3R 20256926 20256948 4 75 0.0 1.5 0.8 2.2 98 chr3R 20256850 intron cic + chr3R 20256899 intron cic + chr3R 20256948 intron cic + chr3R_4_20255001 chr3R_20255001 RAL-879 753 chr3R 20266525 20266540 chr3R 20272991 20273009 Burdock 4 6468 2.5 4.5 3.5 0.9 6484 chr3R 20266525 intron cic + chr3R 20269767 intron cic + chr3R 20273009 intron cic + chr3R_4_20265001 chr3R_20265001 RAL-879 754 chr3R 20424437 20424459 chr3R 20426607 20426628 5 2169 18.5 10.5 14.5 0.3 2191 chr3R 20424437 intron Gfrl - chr3R 20425532 intron Gfrl - chr3R 20426628 intron Gfrl - chr3R_5_20425001 chr3R_20425001 RAL-879 755 chr3R 20450906 20450935 chr3R 20450995 20451007 5 83 4.0 3.5 3.8 1.0 101 chr3R 20450906 intron Gfrl - chr3R 20450956 intron Gfrl - chr3R 20451007 intron Gfrl - chr3R_5_20450001 chr3R_20450001 RAL-879 756 chr3R 20596195 20596214 chr3R 20596282 20596291 7 79 0.0 1.0 0.5 4.7 96 chr3R 20596195 intron bon + chr3R 20596243 intron bon + chr3R 20596291 intron bon + chr3R_7_20595001 chr3R_20595001 RAL-879 757 chr3R 20722853 20722875 chr3R 20722980 20722982 5 119 2.0 2.5 2.2 1.6 129 chr3R 20722853 intergenic not near genes chr3R 20722918 intergenic not near genes chr3R 20722982 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-879 758 chr3R 20870252 20870283 chr3R 20870334 20870361 7 78 2.5 2.5 2.5 2.0 109 chr3R 20870252 intergenic not near genes chr3R 20870306 intergenic not near genes chr3R 20870361 intergenic not near genes chr3R_7_20870001 chr3R_20870001 RAL-879 759 chr3R 20953383 20953400 chr3R 20953511 20953533 8 137 2.0 1.5 1.8 2.9 150 chr3R 20953383 intron Atpalpha + chr3R 20953458 intron Atpalpha + chr3R 20953533 intron Atpalpha + chr3R_8_20950001 chr3R_20950001 RAL-879 760 chr3R 21041099 21041124 chr3R 21041252 21041270 6 151 3.5 1.5 2.5 1.7 171 chr3R 21041099 exon Dhc93AB - chr3R 21041184 intron Dhc93AB - chr3R 21041270 intron Dhc93AB - chr3R_6_21040001 chr3R_21040001 RAL-879 761 chr3R 21074808 21074831 chr3R 21075018 21075051 6 212 0.0 0.5 0.2 5.0 243 chr3R 21074808 intron dmrt93B + chr3R 21074930 intron dmrt93B + chr3R 21075051 intron dmrt93B + chr3R_6_21070001 chr3R_21070001 RAL-879 762 chr3R 21163261 21163278 chr3R 21163339 21163351 6 76 0.0 5.0 2.5 1.7 90 chr3R 21163261 intron SNF4Agamma + chr3R 21163306 intron SNF4Agamma + chr3R 21163351 intron SNF4Agamma + chr3R_6_21160001 chr3R_21160001 RAL-879 763 chr3R 21240455 21240476 chr3R 21240543 21240556 5 88 1.5 0.0 0.8 2.8 101 chr3R 21240455 intergenic not near genes chr3R 21240506 intergenic not near genes chr3R 21240556 intergenic not near genes chr3R_5_21240001 chr3R_21240001 RAL-879 764 chr3R 21295332 21295350 chr3R 21295420 21295440 6 92 2.0 1.0 1.5 2.4 108 chr3R 21295332 intergenic not near genes chr3R 21295386 intergenic not near genes chr3R 21295440 intergenic not near genes chr3R_6_21295001 chr3R_21295001 RAL-879 765 chr3R 21366644 21366671 chr3R 21366841 21366858 5 193 2.5 2.0 2.2 1.6 214 chr3R 21366644 intron,5` UTR,5` UTR,5` UTR,5` UTR,5` UTR,exon,3` UTR mod(mdg4) -,pre-mod(mdg4)-AD +,pre-mod(mdg4)-AE +,pre-mod(mdg4)-U +,pre-mod(mdg4)-V +,pre-mod(mdg4)-W +,pre-mod(mdg4)-X +,pre-mod(mdg4)-Y + chr3R 21366751 intron,5` UTR,5` UTR,5` UTR,5` UTR,5` UTR,3` UTR,3` UTR mod(mdg4) -,pre-mod(mdg4)-AD +,pre-mod(mdg4)-AE +,pre-mod(mdg4)-U +,pre-mod(mdg4)-V +,pre-mod(mdg4)-W +,pre-mod(mdg4)-X +,pre-mod(mdg4)-Y + chr3R 21366858 intron,intron,5` UTR,intron,intron,5` UTR,intron,intron mod(mdg4) -,pre-mod(mdg4)-AD +,pre-mod(mdg4)-AE +,pre-mod(mdg4)-U +,pre-mod(mdg4)-V +,pre-mod(mdg4)-W +,pre-mod(mdg4)-X +,pre-mod(mdg4)-Y + chr3R_5_21365001 chr3R_21365001 RAL-879 766 chr3R 21761129 21761150 chr3R 21768512 21768536 mdg1 10 7385 2.5 4.0 3.2 2.4 7407 chr3R 21761129 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768536 exon CG42335 + chr3R_10_21760001 chr3R_21760001 RAL-879 767 chr3R 21784874 21784891 chr3R 21784957 21784972 6 91 1.5 0.0 0.8 3.3 98 chr3R 21784874 3` UTR,3` UTR CASK -,CRG - chr3R 21784923 3` UTR,3` UTR CASK -,CRG - chr3R 21784972 3` UTR,3` UTR CASK -,CRG - chr3R_6_21780001 chr3R_21780001 RAL-879 768 chr3R 21800495 21800520 chr3R 21800574 21800574 7 71 1.0 3.0 2.0 2.3 79 chr3R 21800495 intron CASK - chr3R 21800534 intron CASK - chr3R 21800574 intron CASK - chr3R_7_21800001 chr3R_21800001 RAL-879 769 chr3R 21824971 21824989 chr3R 21825049 21825079 7 80 3.0 2.5 2.8 1.8 108 chr3R 21824971 intergenic not near genes chr3R 21825025 intergenic not near genes chr3R 21825079 intergenic not near genes chr3R_7_21825001 chr3R_21825001 RAL-879 770 chr3R 21907534 21907534 chr3R 28831801 28831802 22 6924268 22.0 21.0 21.5 1.0 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-879 771 chr3R 8339246 8339247 chr3R 21907535 21907535 7 13568289 14.0 22.0 18.0 0.4 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-879 772 chr3R 20177844 20177845 chr3R 21907535 21907535 5 1729690 7.0 22.0 14.5 0.3 1729691 chr3R 20177844 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_5_21040001 chr3R_21040001 RAL-879 773 chr3R 21907535 21907535 chr3R 28831799 28831802 22 6924266 21.5 21.0 21.2 1.0 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-879 774 chr3R 21907536 21907536 chr3R 28831801 28831803 23 6924266 21.5 21.0 21.2 1.0 6924267 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831803 intron WASp - chr3R_23_25365001 chr3R_25365001 RAL-879 775 chr3R 22099684 22099688 chr3R 22099789 22099808 4 112 4.0 2.0 3.0 1.0 124 chr3R 22099684 intron CG5778 - chr3R 22099746 intron CG5778 - chr3R 22099808 intron CG5778 - chr3R_4_22095001 chr3R_22095001 RAL-879 776 chr3R 22108366 22108391 chr3R 22108584 22108623 5 217 1.0 3.0 2.0 1.7 257 chr3R 22108366 intron CG5778 - chr3R 22108494 intron CG5778 - chr3R 22108623 intron CG5778 - chr3R_5_22105001 chr3R_22105001 RAL-879 777 chr3R 22272355 22272371 chr3R 22272437 22272450 8 82 4.0 3.0 3.5 1.8 95 chr3R 22272355 intron SKIP + chr3R 22272402 intron SKIP + chr3R 22272450 intron SKIP + chr3R_8_22270001 chr3R_22270001 RAL-879 778 chr3R 22339576 22339600 chr3R 22339660 22339689 8 82 3.0 5.0 4.0 1.6 113 chr3R 22339576 intron CG5388 - chr3R 22339632 intron CG5388 - chr3R 22339689 intron CG5388 - chr3R_8_22335001 chr3R_22335001 RAL-879 779 chr3R 22450560 22450577 chr3R 22453185 22453217 NOF 5 2630 5.0 4.0 4.5 0.9 2657 chr3R 22450560 intron CG34376 + chr3R 22451888 intron CG34376 + chr3R 22453217 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-879 780 chr3R 22507803 22507815 chr3R 22507870 22507870 6 70 1.5 3.5 2.5 1.7 67 chr3R 22507803 intron Octbeta1R + chr3R 22507836 intron Octbeta1R + chr3R 22507870 intron Octbeta1R + chr3R_6_22505001 chr3R_22505001 RAL-879 781 chr3R 22538455 22538473 chr3R 22538529 22538558 9 82 5.5 4.0 4.8 1.6 103 chr3R 22538455 intron CG5326 - chr3R 22538506 intron CG5326 - chr3R 22538558 intron CG5326 - chr3R_9_22535001 chr3R_22535001 RAL-879 782 chr3R 22797764 22797778 chr3R 22797850 22797862 4 83 3.5 0.0 1.8 1.4 98 chr3R 22797764 intergenic not near genes chr3R 22797813 intergenic not near genes chr3R 22797862 intergenic not near genes chr3R_4_22795001 chr3R_22795001 RAL-879 783 chr3R 22797781 22797937 chr3R 22797849 22798008 7 81 0.0 0.0 0.0 7.0 227 chr3R 22797781 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798008 intergenic not near genes chr3R_7_22795001 chr3R_22795001 RAL-879 784 chr3R 22867439 22867465 chr3R 22867567 22867596 8 120 4.5 3.5 4.0 1.6 157 chr3R 22867439 intergenic not near genes chr3R 22867518 intergenic not near genes chr3R 22867596 intergenic not near genes chr3R_8_22865001 chr3R_22865001 RAL-879 785 chr3R 22880950 22880959 chr3R 22881079 22881097 4 136 0.5 1.0 0.8 2.2 147 chr3R 22880950 intergenic not near genes chr3R 22881024 intergenic not near genes chr3R 22881097 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-879 786 chr3R 22881203 22881227 chr3R 22884899 22884902 Doc 4 3695 1.5 0.5 1.0 2.0 3699 chr3R 22881203 intergenic not near genes chr3R 22883052 intergenic not near genes chr3R 22884902 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-879 787 chr3R 22927698 22927728 chr3R 22927777 22927787 8 72 1.5 3.5 2.5 2.3 89 chr3R 22927698 intron klg + chr3R 22927742 intron klg + chr3R 22927787 intron klg + chr3R_8_22925001 chr3R_22925001 RAL-879 788 chr3R 22993505 22993527 chr3R 22993640 22993662 6 134 3.0 4.0 3.5 1.3 157 chr3R 22993505 intron Nha2 - chr3R 22993584 intron Nha2 - chr3R 22993662 intron Nha2 - chr3R_6_22990001 chr3R_22990001 RAL-879 789 chr3R 22993529 22993537 chr3R 22993639 22993649 4 118 2.0 4.0 3.0 1.0 120 chr3R 22993529 intron Nha2 - chr3R 22993589 intron Nha2 - chr3R 22993649 intron Nha2 - chr3R_4_22990001 chr3R_22990001 RAL-879 790 chr3R 23073662 23073686 chr3R 23073743 23073769 8 83 1.0 1.5 1.2 3.6 107 chr3R 23073662 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073769 intron CG13830 - chr3R_8_23070001 chr3R_23070001 RAL-879 791 chr3R 23114173 23114199 chr3R 23114243 23114272 6 68 1.5 2.5 2.0 2.0 99 chr3R 23114173 3` UTR Rassf - chr3R 23114222 3` UTR Rassf - chr3R 23114272 3` UTR Rassf - chr3R_6_23110001 chr3R_23110001 RAL-879 792 chr3R 23291253 23291283 chr3R 23291339 23291353 5 82 5.0 3.5 4.2 1.0 100 chr3R 23291253 3` UTR pnt - chr3R 23291303 3` UTR pnt - chr3R 23291353 3` UTR pnt - chr3R_5_23290001 chr3R_23290001 RAL-879 793 chr3R 23572758 23572775 chr3R 23572877 23572889 5 116 2.0 4.0 3.0 1.2 131 chr3R 23572758 intron beat-IV + chr3R 23572824 intron beat-IV + chr3R 23572889 intron beat-IV + chr3R_5_23570001 chr3R_23570001 RAL-879 794 chr3R 23572778 23572780 chr3R 23572873 23572899 5 111 2.0 3.0 2.5 1.4 121 chr3R 23572778 intron beat-IV + chr3R 23572838 intron beat-IV + chr3R 23572899 intron beat-IV + chr3R_5_23570001 chr3R_23570001 RAL-879 795 chr3R 23626343 23626354 chr3R 23626420 23626453 8 89 2.5 4.0 3.2 1.9 110 chr3R 23626343 intron CG31145 - chr3R 23626398 intron CG31145 - chr3R 23626453 intron CG31145 - chr3R_8_23625001 chr3R_23625001 RAL-879 796 chr3R 23783476 23783498 chr3R 23783578 23783600 5 98 2.0 0.0 1.0 2.5 124 chr3R 23783476 intron mbc + chr3R 23783538 intron mbc + chr3R 23783600 intron mbc + chr3R_5_23780001 chr3R_23780001 RAL-879 797 chr3R 23835414 23835432 chr3R 23844564 23844582 roo 6 9148 1.5 1.0 1.2 2.7 9168 chr3R 23835414 intron CG34355 + chr3R 23839998 intron CG34355 + chr3R 23844582 intron CG34355 + chr3R_6_23835001 chr3R_23835001 RAL-879 798 chr3R 24011670 24011679 chr3R 24011753 24011760 4 82 2.5 4.5 3.5 0.9 90 chr3R 24011670 intron KrT95D - chr3R 24011715 intron KrT95D - chr3R 24011760 intron KrT95D - chr3R_4_24010001 chr3R_24010001 RAL-879 799 chr3R 24072098 24072107 chr3R 24072521 24072525 jockey 4 424 4.5 0.5 2.5 1.1 427 chr3R 24072098 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072525 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-879 800 chr3R 24074567 24074583 chr3R 24074643 24074659 7 75 5.5 1.0 3.2 1.7 92 chr3R 24074567 intron 4EHP - chr3R 24074613 intron 4EHP - chr3R 24074659 intron 4EHP - chr3R_7_24070001 chr3R_24070001 RAL-879 801 chr3R 24110563 24110598 chr3R 24110649 24110677 9 83 1.5 2.5 2.0 3.0 114 chr3R 24110563 intron CG13605 - chr3R 24110620 intron CG13605 - chr3R 24110677 intron CG13605 - chr3R_9_24110001 chr3R_24110001 RAL-879 802 chr3R 24199761 24199770 chr3R 24199818 24199832 5 64 2.5 2.5 2.5 1.4 71 chr3R 24199761 intron twin - chr3R 24199796 intron twin - chr3R 24199832 intron twin - chr3R_5_24195001 chr3R_24195001 RAL-879 803 chr3R 24426287 24426312 chr3R 24426544 24426568 10 255 4.5 4.0 4.2 1.9 281 chr3R 24426287 intron nAChRalpha1 - chr3R 24426428 intron nAChRalpha1 - chr3R 24426568 intron nAChRalpha1 - chr3R_10_24425001 chr3R_24425001 RAL-879 804 chr3R 24444184 24444208 chr3R 24444341 24444348 5 152 1.5 2.0 1.8 1.8 164 chr3R 24444184 intron nAChRalpha1 - chr3R 24444266 intron nAChRalpha1 - chr3R 24444348 intron nAChRalpha1 - chr3R_5_24440001 chr3R_24440001 RAL-879 805 chr3R 24670183 24670191 chr3R 24670268 24670274 4 84 3.0 1.5 2.2 1.2 91 chr3R 24670183 intron slo + chr3R 24670228 intron slo + chr3R 24670274 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-879 806 chr3R 24730109 24730125 chr3R 24732469 24732469 Doc 8 2364 2.0 1.5 1.8 2.9 2360 chr3R 24730109 intron tok + chr3R 24731289 intron tok + chr3R 24732469 intron tok + chr3R_8_24730001 chr3R_24730001 RAL-879 807 chr3R 24912498 24912505 chr3R 24912566 24912568 4 70 1.0 3.0 2.0 1.3 70 chr3R 24912498 intergenic CR44267 + chr3R 24912533 intergenic CR44267 + chr3R 24912568 intergenic CR44267 + chr3R_4_24910001 chr3R_24910001 RAL-879 808 chr3R 24927121 24927157 chr3R 24931912 24931925 Doc 4 4785 1.0 2.0 1.5 1.6 4804 chr3R 24927121 intergenic Trf4-2 + chr3R 24929523 intergenic not near genes chr3R 24931925 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-879 809 chr3R 24987125 24987139 chr3R 24987578 24987590 4 455 3.5 1.5 2.5 1.1 465 chr3R 24987125 intron tnc + chr3R 24987358 intron tnc + chr3R 24987590 intron tnc + chr3R_4_24985001 chr3R_24985001 RAL-879 810 chr3R 25004899 25004911 chr3R 25004982 25004989 6 82 6.0 5.5 5.8 0.9 90 chr3R 25004899 intron tnc + chr3R 25004944 intron tnc + chr3R 25004989 intron tnc + chr3R_6_25000001 chr3R_25000001 RAL-879 811 chr3R 25027545 25027568 chr3R 25027749 25027781 6 208 1.0 4.5 2.8 1.6 236 chr3R 25027545 intron Hr96 + chr3R 25027663 intron Hr96 + chr3R 25027781 intron Hr96 + chr3R_6_25025001 chr3R_25025001 RAL-879 812 chr3R 25526265 25526285 chr3R 25526331 25526357 5 62 0.5 3.0 1.8 1.8 92 chr3R 25526265 intron msi + chr3R 25526311 intron msi + chr3R 25526357 intron msi + chr3R_5_25525001 chr3R_25525001 RAL-879 813 chr3R 25832707 25832716 chr3R 25841872 25841881 roo 4 9170 5.5 3.0 4.2 0.8 9174 chr3R 25832707 exon alpha4GT2 + chr3R 25837294 intron alpha4GT2 + chr3R 25841881 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-879 814 chr3R 25864842 25864875 chr3R 25865100 25865132 13 252 6.0 1.0 3.5 2.9 290 chr3R 25864842 intron CG5890 + chr3R 25864987 intron CG5890 + chr3R 25865132 intron CG5890 + chr3R_13_25860001 chr3R_25860001 RAL-879 815 chr3R 26301836 26301856 chr3R 26301917 26301922 4 77 1.5 2.0 1.8 1.4 86 chr3R 26301836 intergenic not near genes chr3R 26301879 intergenic not near genes chr3R 26301922 intergenic not near genes chr3R_4_26300001 chr3R_26300001 RAL-879 816 chr3R 26642734 26642757 chr3R 26643125 26643136 jockey 5 383 2.0 2.0 2.0 1.7 402 chr3R 26642734 intergenic not near genes chr3R 26642935 intergenic not near genes chr3R 26643136 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-879 817 chr3R 26770243 26770273 chr3R 26770318 26770350 10 73 0.5 3.0 1.8 3.6 107 chr3R 26770243 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770350 intergenic not near genes chr3R_10_26770001 chr3R_26770001 RAL-879 818 chr3R 27071422 27071441 chr3R 27071728 27071733 5 302 1.5 0.0 0.8 2.8 311 chr3R 27071422 intergenic not near genes chr3R 27071578 intergenic not near genes chr3R 27071733 intergenic not near genes chr3R_5_27070001 chr3R_27070001 RAL-879 819 chr3R 27140521 27140546 chr3R 27148123 27148139 412 8 7604 5.5 3.5 4.5 1.5 7618 chr3R 27140521 intron CG6051 - chr3R 27144330 intron CG6051 - chr3R 27148139 intron CG6051 - chr3R_8_27140001 chr3R_27140001 RAL-879 820 chr3R 27254282 27254311 chr3R 27254403 27254432 11 115 4.5 1.5 3.0 2.8 150 chr3R 27254282 intron TfIIA-L + chr3R 27254357 intron TfIIA-L + chr3R 27254432 intron TfIIA-L + chr3R_11_27250001 chr3R_27250001 RAL-879 821 chr3R 27393770 27393784 chr3R 27393837 27393850 6 73 1.5 1.5 1.5 2.4 80 chr3R 27393770 intron side - chr3R 27393810 intron side - chr3R 27393850 intron side - chr3R_6_27390001 chr3R_27390001 RAL-879 822 chr3R 27470895 27470913 chr3R 27470998 27471025 5 108 2.5 4.0 3.2 1.2 130 chr3R 27470895 intergenic not near genes chr3R 27470960 intergenic not near genes chr3R 27471025 intergenic not near genes chr3R_5_27470001 chr3R_27470001 RAL-879 823 chr3R 27595070 27595076 chr3R 27595135 27595159 4 78 5.5 3.0 4.2 0.8 89 chr3R 27595070 intron CG5639 - chr3R 27595114 intron CG5639 - chr3R 27595159 intron CG5639 - chr3R_4_27595001 chr3R_27595001 RAL-879 824 chr3R 27705370 27705392 chr3R 27705436 27705472 7 72 1.0 3.0 2.0 2.3 102 chr3R 27705370 exon CG12428 - chr3R 27705421 intron CG12428 - chr3R 27705472 exon CG12428 - chr3R_7_27705001 chr3R_27705001 RAL-879 825 chr3R 27856772 27856792 chr3R 27858250 27858275 hopper2 5 1482 3.0 6.0 4.5 0.9 1503 chr3R 27856772 intron CG34353 - chr3R 27857524 intron CG34353 - chr3R 27858275 intron CG34353 - chr3R_5_27855001 chr3R_27855001 RAL-879 826 chr3R 28012943 28012978 chr3R 28013164 28013199 4 217 2.5 3.0 2.8 1.1 256 chr3R 28012943 intergenic not near genes chr3R 28013071 intergenic not near genes chr3R 28013199 intergenic not near genes chr3R_4_28010001 chr3R_28010001 RAL-879 827 chr3R 28035497 28035514 chr3R 28035574 28035577 4 73 0.0 5.5 2.8 1.1 80 chr3R 28035497 intron CG34362 + chr3R 28035537 intron CG34362 + chr3R 28035577 intron CG34362 + chr3R_4_28035001 chr3R_28035001 RAL-879 828 chr3R 28068493 28068530 chr3R 28073935 28073954 I-element 8 5433 0.0 2.5 1.2 3.6 5461 chr3R 28068493 intron CG34362 + chr3R 28071224 intron CG34362 + chr3R 28073954 intron CG34362 + chr3R_8_28070001 chr3R_28070001 RAL-879 829 chr3R 28172961 28172991 chr3R 28173118 28173148 6 157 2.0 2.5 2.2 1.9 187 chr3R 28172961 intron CG34354 + chr3R 28173054 intron CG34354 + chr3R 28173148 intron CG34354 + chr3R_6_28170001 chr3R_28170001 RAL-879 830 chr3R 28173677 28173702 chr3R 28181101 28181132 mdg1 5 7429 0.0 0.5 0.2 4.2 7455 chr3R 28173677 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181132 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-879 831 chr3R 28223267 28223277 chr3R 28223353 28223362 4 84 1.0 0.0 0.5 2.7 95 chr3R 28223267 intron CG34354 + chr3R 28223314 intron CG34354 + chr3R 28223362 intron CG34354 + chr3R_4_28220001 chr3R_28220001 RAL-879 832 chr3R 28253348 28253372 chr3R 28255847 28255879 jockey 11 2501 1.0 4.5 2.8 2.9 2531 chr3R 28253348 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255879 intergenic not near genes chr3R_11_28250001 chr3R_28250001 RAL-879 833 chr3R 28380812 28380823 chr3R 28381026 28381026 5 216 2.5 2.0 2.2 1.6 214 chr3R 28380812 intergenic not near genes chr3R 28380919 intergenic not near genes chr3R 28381026 intergenic not near genes chr3R_5_28380001 chr3R_28380001 RAL-879 834 chr3R 28407705 28407737 chr3R 28407788 28407823 8 84 2.5 4.5 3.5 1.8 118 chr3R 28407705 intergenic not near genes chr3R 28407764 intergenic not near genes chr3R 28407823 intergenic not near genes chr3R_8_28405001 chr3R_28405001 RAL-879 835 chr3R 28478434 28478436 chr3R 28478496 28478514 4 67 2.5 0.5 1.5 1.6 80 chr3R 28478434 intergenic not near genes chr3R 28478474 intergenic not near genes chr3R 28478514 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-879 836 chr3R 28484353 28484374 chr3R 28486277 28486292 11 1921 39.5 54.5 47.0 0.2 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_11_28485001 chr3R_28485001 RAL-879 837 chr3R 28633194 28633223 chr3R 28633274 28633286 6 74 0.5 2.5 1.5 2.4 92 chr3R 28633194 intron CG10011 - chr3R 28633240 intron CG10011 - chr3R 28633286 intron CG10011 - chr3R_6_28630001 chr3R_28630001 RAL-879 838 chr3R 28688192 28688224 chr3R 28688345 28688377 7 150 2.5 5.0 3.8 1.5 185 chr3R 28688192 intron CG9990 + chr3R 28688284 intron CG9990 + chr3R 28688377 intron CG9990 + chr3R_7_28685001 chr3R_28685001 RAL-879 839 chr3R 28739477 28739507 chr3R 28739567 28739597 4 84 1.5 4.5 3.0 1.0 120 chr3R 28739477 intron AstA-R2 - chr3R 28739537 intron AstA-R2 - chr3R 28739597 intron AstA-R2 - chr3R_4_28735001 chr3R_28735001 RAL-879 840 chr3R 28763914 28763919 chr3R 28771334 28771362 Stalker4 5 7435 0.0 0.0 0.0 5.0 7448 chr3R 28763914 intergenic not near genes chr3R 28767638 intergenic not near genes chr3R 28771362 intergenic not near genes chr3R_5_28765001 chr3R_28765001 RAL-879 841 chr3R 28802053 28802075 chr3R 28802120 28802155 4 72 1.5 2.0 1.8 1.4 102 chr3R 28802053 intergenic not near genes chr3R 28802104 intergenic not near genes chr3R 28802155 intergenic not near genes chr3R_4_28800001 chr3R_28800001 RAL-879 842 chr3R 21907534 21907536 chr3R 28831801 28831803 76 6924267 21.5 21.0 21.2 3.4 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_76_25365001 chr3R_25365001 RAL-879 843 chr3R 28989912 28989919 chr3R 28990086 28990093 4 174 4.5 2.0 3.2 1.0 181 chr3R 28989912 intergenic not near genes chr3R 28990002 intergenic not near genes chr3R 28990093 intergenic not near genes chr3R_4_28990001 chr3R_28990001 RAL-879 844 chr3R 21907534 21907536 chr3R 29013340 29013340 5 7105805 21.5 14.0 17.8 0.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-879 845 chr3R 29079387 29079402 chr3R 29080752 29080755 NOF 4 1362 4.5 3.5 4.0 0.8 1368 chr3R 29079387 intron CG11873 + chr3R 29080071 intron CG11873 + chr3R 29080755 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-879 846 chr3R 29213074 29213089 chr3R 29213154 29213158 6 79 5.0 7.0 6.0 0.9 84 chr3R 29213074 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213158 intergenic not near genes chr3R_6_29210001 chr3R_29210001 RAL-879 847 chr3R 29237252 29237267 chr3R 29239273 29239288 4 2021 17.5 7.0 12.2 0.3 2036 chr3R 29237252 exon CG11951 - chr3R 29238270 intron CG11951 - chr3R 29239288 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-879 848 chr3R 29237271 29237283 chr3R 29239270 29239299 5 2007 19.5 6.5 13.0 0.4 2028 chr3R 29237271 exon CG11951 - chr3R 29238285 intron CG11951 - chr3R 29239299 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-879 849 chr3R 29406611 29406649 chr3R 29407896 29407917 jockey 5 1275 4.0 2.5 3.2 1.2 1306 chr3R 29406611 intron Ptp99A + chr3R 29407264 intron Ptp99A + chr3R 29407917 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-879 850 chr3R 29627286 29627314 chr3R 29627696 29627700 6 404 2.0 2.0 2.0 2.0 414 chr3R 29627286 intergenic not near genes chr3R 29627493 intergenic not near genes chr3R 29627700 intergenic not near genes chr3R_6_29625001 chr3R_29625001 RAL-879 851 chr3R 29758941 29758970 chr3R 29759014 29759048 12 69 5.0 1.5 3.2 2.9 107 chr3R 29758941 3` UTR CR44953 - chr3R 29758994 3` UTR CR44953 - chr3R 29759048 intergenic CR44953 - chr3R_12_29755001 chr3R_29755001 RAL-879 852 chr3R 29773875 29773900 chr3R 29773966 29773983 4 89 6.0 2.5 4.2 0.8 108 chr3R 29773875 intron kay + chr3R 29773929 intron kay + chr3R 29773983 intron kay + chr3R_4_29770001 chr3R_29770001 RAL-879 853 chr3R 29831834 29831841 chr3R 29831896 29831912 5 77 1.0 3.0 2.0 1.7 78 chr3R 29831834 intron Atg16 - chr3R 29831873 intron Atg16 - chr3R 29831912 intron Atg16 - chr3R_5_29830001 chr3R_29830001 RAL-879 854 chr3R 29854832 29854852 chr3R 29854912 29854928 4 75 2.5 4.5 3.5 0.9 96 chr3R 29854832 3` UTR dgt1 - chr3R 29854880 exon dgt1 - chr3R 29854928 exon dgt1 - chr3R_4_29850001 chr3R_29850001 RAL-879 855 chr3R 29882030 29882050 chr3R 29891187 29891207 roo 5 9157 1.5 5.5 3.5 1.1 9177 chr3R 29882030 intron CG31038 + chr3R 29886618 intron CG31038 + chr3R 29891207 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-879 856 chr3R 30077914 30077940 chr3R 30078001 30078025 4 85 3.0 4.0 3.5 0.9 111 chr3R 30077914 intron sima + chr3R 30077970 intron sima + chr3R 30078025 intron sima + chr3R_4_30075001 chr3R_30075001 RAL-879 857 chr3R 30084854 30084861 chr3R 30086321 30086326 hobo 4 1466 5.5 4.0 4.8 0.7 1472 chr3R 30084854 intron sima + chr3R 30085590 intron sima + chr3R 30086326 intron sima + chr3R_4_30085001 chr3R_30085001 RAL-879 858 chr3R 30084865 30084883 chr3R 30086314 30086350 hobo 12 1455 1.0 3.5 2.2 3.8 1485 chr3R 30084865 intron sima + chr3R 30085608 intron sima + chr3R 30086350 intron sima + chr3R_12_30085001 chr3R_30085001 RAL-879 859 chr3R 30088614 30088641 chr3R 30088699 30088712 6 82 0.5 0.5 0.5 4.0 98 chr3R 30088614 intron sima + chr3R 30088663 intron sima + chr3R 30088712 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-879 860 chr3R 30147552 30147572 chr3R 30147634 30147644 7 75 2.0 5.0 3.5 1.6 92 chr3R 30147552 intron AdoR - chr3R 30147598 intron AdoR - chr3R 30147644 intron AdoR - chr3R_7_30145001 chr3R_30145001 RAL-879 861 chr3R 30480475 30480506 chr3R 30482942 30482974 jockey 11 2464 5.0 4.5 4.8 1.9 2499 chr3R 30480475 intron PH4alphaEFB + chr3R 30481724 intron PH4alphaEFB + chr3R 30482974 intron PH4alphaEFB + chr3R_11_30480001 chr3R_30480001 RAL-879 862 chr3R 30480508 30480512 chr3R 30482941 30482961 jockey 4 2453 3.5 4.5 4.0 0.8 2453 chr3R 30480508 intron PH4alphaEFB + chr3R 30481734 intron PH4alphaEFB + chr3R 30482961 intron PH4alphaEFB + chr3R_4_30480001 chr3R_30480001 RAL-879 863 chr3R 30485053 30485069 chr3R 30485128 30485136 4 74 2.5 3.0 2.8 1.1 83 chr3R 30485053 intron PH4alphaEFB + chr3R 30485094 intron PH4alphaEFB + chr3R 30485136 intron PH4alphaEFB + chr3R_4_30485001 chr3R_30485001 RAL-879 864 chr3R 30592504 30592533 chr3R 30592613 30592618 5 105 4.5 3.5 4.0 1.0 114 chr3R 30592504 intergenic CG2246 - chr3R 30592561 intergenic CG2246 - chr3R 30592618 intergenic CG2246 - chr3R_5_30590001 chr3R_30590001 RAL-879 865 chr3R 30627624 30627637 chr3R 30627682 30627712 9 62 2.0 4.5 3.2 2.1 88 chr3R 30627624 exon CG2267 - chr3R 30627668 exon CG2267 - chr3R 30627712 exon CG2267 - chr3R_9_30625001 chr3R_30625001 RAL-879 866 chr3R 31042111 31042143 chr3R 31042198 31042204 10 78 1.0 1.0 1.0 5.0 93 chr3R 31042111 intron CanA1 + chr3R 31042158 intron CanA1 + chr3R 31042204 intron CanA1 + chr3R_10_31040001 chr3R_31040001 RAL-879 867 chr3R 31062657 31062676 chr3R 31062738 31062757 6 79 2.0 3.5 2.8 1.6 100 chr3R 31062657 intergenic not near genes chr3R 31062707 intergenic not near genes chr3R 31062757 intergenic not near genes chr3R_6_31060001 chr3R_31060001 RAL-879 868 chr3R 31105217 31105248 chr3R 31105474 31105477 6 248 2.0 2.5 2.2 1.9 260 chr3R 31105217 intergenic not near genes chr3R 31105347 intergenic not near genes chr3R 31105477 intergenic not near genes chr3R_6_31105001 chr3R_31105001 RAL-879 869 chr3R 31137155 31137178 chr3R 31137235 31137257 7 75 1.0 0.0 0.5 4.7 102 chr3R 31137155 intron Gycbeta100B + chr3R 31137206 intron Gycbeta100B + chr3R 31137257 intron Gycbeta100B + chr3R_7_31135001 chr3R_31135001 RAL-879 870 chr3R 31156485 31156511 chr3R 31156565 31156584 5 77 4.0 2.0 3.0 1.2 99 chr3R 31156485 intron Gycbeta100B + chr3R 31156534 intron Gycbeta100B + chr3R 31156584 intron Gycbeta100B + chr3R_5_31155001 chr3R_31155001 RAL-879 871 chr3R 31165137 31165164 chr3R 31165272 31165290 8 129 3.5 3.5 3.5 1.8 153 chr3R 31165137 intron,intron Gycbeta100B +,stops - chr3R 31165214 intron,intron Gycbeta100B +,stops - chr3R 31165290 intron,intron Gycbeta100B +,stops - chr3R_8_31165001 chr3R_31165001 RAL-879 872 chr3R 31279401 31279409 chr3R 31285562 31285591 diver 4 6175 3.0 6.0 4.5 0.7 6190 chr3R 31279401 intergenic not near genes chr3R 31282496 intergenic not near genes chr3R 31285591 intergenic not near genes chr3R_4_31280001 chr3R_31280001 RAL-879 873 chr3R 31413112 31413123 chr3R 31418292 31418323 copia 7 5193 1.0 2.0 1.5 2.8 5211 chr3R 31413112 intron Gprk2 + chr3R 31415718 intron Gprk2 + chr3R 31418323 intron Gprk2 + chr3R_7_31415001 chr3R_31415001 RAL-879 874 chr3R 31426891 31426914 chr3R 31426975 31427004 7 88 3.0 3.0 3.0 1.8 113 chr3R 31426891 intron Gprk2 + chr3R 31426948 intron Gprk2 + chr3R 31427004 intron Gprk2 + chr3R_7_31425001 chr3R_31425001 RAL-879 875 chr3R 31435375 31435391 chr3R 31435513 31435534 4 141 0.0 3.0 1.5 1.6 159 chr3R 31435375 intron Gprk2 + chr3R 31435454 intron Gprk2 + chr3R 31435534 intron Gprk2 + chr3R_4_31435001 chr3R_31435001 RAL-879 876 chr3R 31450759 31450779 chr3R 31450953 31450960 4 186 26.0 19.5 22.8 0.2 201 chr3R 31450759 intron Gprk2 + chr3R 31450860 intron Gprk2 + chr3R 31450960 intron Gprk2 + chr3R_4_31450001 chr3R_31450001 RAL-879 877 chr3R 31453234 31453249 chr3R 31453297 31453325 6 65 3.5 4.0 3.8 1.2 91 chr3R 31453234 intron Gprk2 + chr3R 31453280 intron Gprk2 + chr3R 31453325 exon Gprk2 + chr3R_6_31450001 chr3R_31450001 RAL-879 878 chr3R 31501335 31501350 chr3R 31501462 31501478 4 128 1.5 3.5 2.5 1.1 143 chr3R 31501335 intron mey + chr3R 31501406 intron mey + chr3R 31501478 intron mey + chr3R_4_31500001 chr3R_31500001 RAL-879 879 chr3R 31637876 31637890 chr3R 31637957 31637960 4 82 4.0 5.0 4.5 0.7 84 chr3R 31637876 intron kek6 + chr3R 31637918 intron kek6 + chr3R 31637960 intron kek6 + chr3R_4_31635001 chr3R_31635001 RAL-879 880 chr3R 31691532 31691560 chr3R 31696296 31696298 Doc 9 4751 4.0 6.5 5.2 1.5 4766 chr3R 31691532 intergenic not near genes chr3R 31693915 intergenic not near genes chr3R 31696298 intergenic not near genes chr3R_9_31690001 chr3R_31690001 RAL-879 881 chr3R 31762849 31762870 chr3R 31762926 31762927 6 72 5.5 5.0 5.2 1.0 78 chr3R 31762849 intergenic CG2150 - chr3R 31762888 intergenic CG2150 - chr3R 31762927 intergenic CG2150 - chr3R_6_31760001 chr3R_31760001 RAL-879 882 chr3R 31866414 31866436 chr3R 31866490 31866512 4 77 0.0 0.5 0.2 3.3 98 chr3R 31866414 exon heph - chr3R 31866463 intron heph - chr3R 31866512 intron heph - chr3R_4_31865001 chr3R_31865001 RAL-879 883 chr3R 31930574 31930589 chr3R 31930642 31930665 6 73 3.0 2.5 2.8 1.6 91 chr3R 31930574 intron heph - chr3R 31930620 intron heph - chr3R 31930665 intron heph - chr3R_6_31930001 chr3R_31930001 RAL-879 884 chr3R 31997994 31998018 chr3R 32005460 32005462 blood 6 7461 4.5 3.0 3.8 1.2 7468 chr3R 31997994 intron heph - chr3R 32001728 intron heph - chr3R 32005462 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-879 885 chr3R 32034276 32034292 chr3R 32034343 32034375 7 76 3.5 4.0 3.8 1.5 99 chr3R 32034276 intergenic not near genes chr3R 32034326 intergenic not near genes chr3R 32034375 intergenic not near genes chr3R_7_32030001 chr3R_32030001 RAL-879 886 chr3R 32039629 32039663 chr3R 32039706 32039728 4 64 1.5 1.0 1.2 1.8 99 chr3R 32039629 3` UTR CG2053 + chr3R 32039678 3` UTR CG2053 + chr3R 32039728 3` UTR CG2053 + chr3R_4_32035001 chr3R_32035001 RAL-879 887 chr4 671606 671629 chr4 680189 680202 Tirant 5 8581 4.0 2.5 3.2 1.2 8596 chr4 671606 intron CG11360 + chr4 675904 intron CG11360 + chr4 680202 intron CG11360 + chr4_5_675001 chr4_675001 RAL-879 888 chr4 959640 959651 chr4 959804 959830 5 170 4.0 2.0 3.0 1.2 190 chr4 959640 intergenic CR44030 +,CR45201 - chr4 959735 5` UTR CR44030 + chr4 959830 5` UTR CR44030 + chr4_5_955001 chr4_955001 RAL-879 889 chrX 367036 367071 chrX 367133 367168 5 93 1.0 1.5 1.2 2.3 132 chrX 367036 intron,5` UTR CG32816 -,yar + chrX 367102 intron CG32816 - chrX 367168 intron CG32816 - chrX_5_365001 chrX_365001 RAL-879 890 chrX 449896 449921 chrX 449993 450016 5 97 1.5 1.5 1.5 2.0 120 chrX 449896 intron CG32816 - chrX 449956 intron CG32816 - chrX 450016 intron CG32816 - chrX_5_445001 chrX_445001 RAL-879 891 chrX 547639 547666 chrX 547878 547903 6 234 3.0 2.0 2.5 1.7 264 chrX 547639 intron Appl + chrX 547771 intron Appl + chrX 547903 intron Appl + chrX_6_545001 chrX_545001 RAL-879 892 chrX 551421 551453 chrX 558983 559006 412 4 7559 3.5 1.5 2.5 1.1 7585 chrX 551421 intron Appl + chrX 555214 intron Appl + chrX 559006 intron Appl + chrX_4_555001 chrX_555001 RAL-879 893 chrX 667660 667682 chrX 667729 667766 4 72 0.5 0.0 0.2 3.3 106 chrX 667660 intergenic not near genes chrX 667713 intergenic not near genes chrX 667766 intergenic not near genes chrX_4_665001 chrX_665001 RAL-879 894 chrX 670268 670297 chrX 670348 670377 7 73 1.0 3.5 2.2 2.2 109 chrX 670268 intergenic not near genes chrX 670322 intergenic not near genes chrX 670377 intergenic not near genes chrX_7_670001 chrX_670001 RAL-879 895 chrX 680846 680852 chrX 680929 680932 5 81 4.0 3.5 3.8 1.0 86 chrX 680846 intergenic not near genes chrX 680889 intergenic not near genes chrX 680932 intergenic not near genes chrX_5_680001 chrX_680001 RAL-879 896 chrX 802302 802314 chrX 802379 802385 4 73 2.5 7.5 5.0 0.7 83 chrX 802302 exon CG13359 - chrX 802344 exon CG13359 - chrX 802385 exon CG13359 - chrX_4_800001 chrX_800001 RAL-879 897 chrX 827612 827631 chrX 835392 835404 roo 4 7779 3.0 3.5 3.2 1.0 7792 chrX 827612 intron CG43867 - chrX 831508 intron CG43867 - chrX 835404 intron CG43867 - chrX_4_830001 chrX_830001 RAL-879 898 chrX 906703 906720 chrX 908492 908509 S-element 4 1787 1.5 2.5 2.0 1.3 1806 chrX 906703 intron CG43867 - chrX 907606 intron CG43867 - chrX 908509 intron CG43867 - chrX_4_905001 chrX_905001 RAL-879 899 chrX 1253742 1253759 chrX 1253823 1253827 4 77 4.5 6.0 5.2 0.6 85 chrX 1253742 intron Atf3 - chrX 1253784 intron Atf3 - chrX 1253827 intron Atf3 - chrX_4_1250001 chrX_1250001 RAL-879 900 chrX 1518035 1518061 chrX 1523437 1523463 jockey 5 5400 5.5 6.0 5.8 0.7 5428 chrX 1518035 intergenic inc + chrX 1520749 intergenic not near genes chrX 1523463 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-879 901 chrX 1554526 1554544 chrX 1554664 1554684 6 143 21.5 16.5 19.0 0.3 158 chrX 1554526 exon Mur2B - chrX 1554605 intron Mur2B - chrX 1554684 exon Mur2B - chrX_6_1550001 chrX_1550001 RAL-879 902 chrX 1627974 1628002 chrX 1635442 1635469 gtwin 6 7460 1.5 4.5 3.0 1.5 7495 chrX 1627974 intron,intron Mur2B -,br + chrX 1631722 intron,intron Mur2B -,br + chrX 1635469 intron,intron Mur2B -,br + chrX_6_1630001 chrX_1630001 RAL-879 903 chrX 1674855 1674879 chrX 1674931 1674935 5 70 6.0 1.0 3.5 1.1 80 chrX 1674855 3` UTR CG32809 - chrX 1674895 3` UTR CG32809 - chrX 1674935 3` UTR CG32809 - chrX_5_1670001 chrX_1670001 RAL-879 904 chrX 2397928 2397936 chrX 2398000 2398010 5 75 3.0 0.0 1.5 2.0 82 chrX 2397928 intergenic not near genes chrX 2397969 intergenic not near genes chrX 2398010 intergenic not near genes chrX_5_2395001 chrX_2395001 RAL-879 905 chrX 2635378 2635400 chrX 2635486 2635503 4 102 2.0 3.5 2.8 1.1 125 chrX 2635378 intron sgg + chrX 2635440 intron sgg + chrX 2635503 intron sgg + chrX_4_2635001 chrX_2635001 RAL-879 906 chrX 3031502 3031526 chrX 3032039 3032060 5 528 22.0 10.0 16.0 0.3 558 chrX 3031502 intron kirre + chrX 3031781 intron kirre + chrX 3032060 intron kirre + chrX_5_3030001 chrX_3030001 RAL-879 907 chrX 3408991 3409015 chrX 3409063 3409092 6 75 0.5 3.0 1.8 2.1 101 chrX 3408991 intron,intron CR44999 +,CG12535 - chrX 3409042 intron,intron CR44999 +,CG12535 - chrX 3409092 intron,intron CR44999 +,CG12535 - chrX_6_3405001 chrX_3405001 RAL-879 908 chrX 3493100 3493111 chrX 3502249 3502266 roo 4 9153 0.5 2.0 1.2 1.8 9166 chrX 3493100 intron,intron CR44999 +,Gas8 - chrX 3497683 intron,intron CR44999 +,Gas8 - chrX 3502266 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-879 909 chrX 3597564 3597583 chrX 3619717 3619748 roo 5 22160 2.0 1.0 1.5 2.0 22184 chrX 3597564 intron AstA-R1 + chrX 3608656 intron AstA-R1 + chrX 3619748 intron AstA-R1 + chrX_5_3605001 chrX_3605001 RAL-879 910 chrX 3629853 3629874 chrX 3629935 3629959 4 84 0.0 1.0 0.5 2.7 106 chrX 3629853 intron AstA-R1 + chrX 3629906 intron AstA-R1 + chrX 3629959 intron AstA-R1 + chrX_4_3625001 chrX_3625001 RAL-879 911 chrX 3630546 3630572 chrX 3630622 3630648 7 73 0.0 3.0 1.5 2.8 102 chrX 3630546 intron AstA-R1 + chrX 3630597 intron AstA-R1 + chrX 3630648 intron AstA-R1 + chrX_7_3630001 chrX_3630001 RAL-879 912 chrX 3726761 3726792 chrX 3730158 3730183 NOF 7 3388 3.0 3.0 3.0 1.8 3422 chrX 3726761 intron tlk + chrX 3728472 intron tlk + chrX 3730183 intron tlk + chrX_7_3725001 chrX_3725001 RAL-879 913 chrX 3881274 3881290 chrX 3881408 3881429 5 135 5.0 1.0 3.0 1.2 155 chrX 3881274 intron VhaAC39-1 + chrX 3881352 intron VhaAC39-1 + chrX 3881429 intron VhaAC39-1 + chrX_5_3880001 chrX_3880001 RAL-879 914 chrX 3986866 3986892 chrX 3994498 3994503 412 6 7628 3.0 1.5 2.2 1.9 7637 chrX 3986866 intergenic not near genes chrX 3990684 intergenic not near genes chrX 3994503 intergenic not near genes chrX_6_3990001 chrX_3990001 RAL-879 915 chrX 4361446 4361465 chrX 4361525 4361542 4 78 1.0 0.0 0.5 2.7 96 chrX 4361446 intron norpA + chrX 4361494 intron norpA + chrX 4361542 intron norpA + chrX_4_4360001 chrX_4360001 RAL-879 916 chrX 4731815 4731848 chrX 4736908 4736912 jockey 8 5089 4.5 5.5 5.0 1.3 5097 chrX 4731815 intergenic not near genes chrX 4734364 intergenic not near genes chrX 4736912 intergenic not near genes chrX_8_4730001 chrX_4730001 RAL-879 917 chrX 4899617 4899636 chrX 4899686 4899712 5 72 1.5 0.0 0.8 2.8 95 chrX 4899617 intron CG42594 + chrX 4899664 intron CG42594 + chrX 4899712 intron CG42594 + chrX_5_4895001 chrX_4895001 RAL-879 918 chrX 4931347 4931378 chrX 4931441 4931457 7 87 22.0 18.5 20.2 0.3 110 chrX 4931347 intron CG44774 - chrX 4931402 intron CG44774 - chrX 4931457 intron CG44774 - chrX_7_4930001 chrX_4930001 RAL-879 919 chrX 5096277 5096304 chrX 5103838 5103869 springer 7 7563 2.5 3.5 3.0 1.8 7592 chrX 5096277 intron,intron CG15465 +,rg + chrX 5100073 intron,intron CG15465 +,rg + chrX 5103869 intron,intron CG15465 +,rg + chrX_7_5100001 chrX_5100001 RAL-879 920 chrX 5220418 5220424 chrX 5220634 5220635 4 216 0.5 5.5 3.0 1.0 217 chrX 5220418 intron,intron CG15465 +,rg + chrX 5220526 intron,intron CG15465 +,rg + chrX 5220635 intron,intron CG15465 +,rg + chrX_4_5220001 chrX_5220001 RAL-879 921 chrX 5450199 5450216 chrX 5450586 5450619 5 396 1.5 1.0 1.2 2.3 420 chrX 5450199 intron SPR + chrX 5450409 intron SPR + chrX 5450619 intron SPR + chrX_5_5450001 chrX_5450001 RAL-879 922 chrX 6118708 6118731 chrX 6118790 6118813 4 82 1.5 4.5 3.0 1.0 105 chrX 6118708 intron Ca-alpha1T - chrX 6118760 intron Ca-alpha1T - chrX 6118813 intron Ca-alpha1T - chrX_4_6115001 chrX_6115001 RAL-879 923 chrX 6335212 6335237 chrX 6337722 6337746 Tirant 7 2507 0.5 1.5 1.0 3.5 2534 chrX 6335212 intergenic not near genes chrX 6336479 intergenic not near genes chrX 6337746 intergenic CG3842 + chrX_7_6335001 chrX_6335001 RAL-879 924 chrX 6392887 6392897 chrX 6397630 6397646 Doc 6 4750 4.5 4.0 4.2 1.2 4759 chrX 6392887 intergenic not near genes chrX 6395266 intergenic not near genes chrX 6397646 intergenic not near genes chrX_6_6395001 chrX_6395001 RAL-879 925 chrX 6445318 6445336 chrX 6451063 6451091 297 4 5750 1.0 0.5 0.8 2.2 5773 chrX 6445318 intron CG42340 - chrX 6448204 intron CG42340 - chrX 6451091 intron CG42340 - chrX_4_6445001 chrX_6445001 RAL-879 926 chrX 6737527 6737538 chrX 6737606 6737612 6 79 4.5 4.0 4.2 1.2 85 chrX 6737527 intron CG3168 - chrX 6737570 intron CG3168 - chrX 6737612 intron CG3168 - chrX_6_6735001 chrX_6735001 RAL-879 927 chrX 6737541 6737549 chrX 6737602 6737610 4 66 2.5 2.0 2.2 1.2 69 chrX 6737541 intron CG3168 - chrX 6737576 intron CG3168 - chrX 6737610 intron CG3168 - chrX_4_6735001 chrX_6735001 RAL-879 928 chrX 6934782 6934799 chrX 6936080 6936096 5 1298 23.5 18.5 21.0 0.2 1314 chrX 6934782 intron CG14431 + chrX 6935439 intron CG14431 + chrX 6936096 intron CG14431 + chrX_5_6935001 chrX_6935001 RAL-879 929 chrX 7023599 7023633 chrX 7030989 7031023 Tabor 5 7387 3.5 3.0 3.2 1.2 7424 chrX 7023599 intron CG12541 - chrX 7027311 intron CG12541 - chrX 7031023 intron CG12541 - chrX_5_7025001 chrX_7025001 RAL-879 930 chrX 7784236 7784250 chrX 7784537 7784538 jockey 6 297 5.0 8.0 6.5 0.8 302 chrX 7784236 intergenic not near genes chrX 7784387 intergenic not near genes chrX 7784538 intergenic not near genes chrX_6_7780001 chrX_7780001 RAL-879 931 chrX 7832440 7832464 chrX 7832529 7832553 7 86 3.0 4.0 3.5 1.6 113 chrX 7832440 intron CG1402 + chrX 7832496 intron CG1402 + chrX 7832553 intron CG1402 + chrX_7_7830001 chrX_7830001 RAL-879 932 chrX 8730455 8730472 chrX 8730527 8730537 5 72 0.5 3.5 2.0 1.7 82 chrX 8730455 intergenic not near genes chrX 8730496 intergenic not near genes chrX 8730537 intergenic not near genes chrX_5_8730001 chrX_8730001 RAL-879 933 chrX 8913520 8913540 chrX 8913629 8913634 5 103 4.5 1.5 3.0 1.2 114 chrX 8913520 intron rdgA + chrX 8913577 intron rdgA + chrX 8913634 intron rdgA + chrX_5_8910001 chrX_8910001 RAL-879 934 chrX 9129507 9129512 chrX 9129572 9129598 4 75 3.0 5.0 4.0 0.8 91 chrX 9129507 intron fend - chrX 9129552 intron fend - chrX 9129598 intron fend - chrX_4_9125001 chrX_9125001 RAL-879 935 chrX 9391575 9391599 chrX 9391721 9391735 4 143 2.0 1.5 1.8 1.4 160 chrX 9391575 intron mgl - chrX 9391655 intron mgl - chrX 9391735 intron mgl - chrX_4_9390001 chrX_9390001 RAL-879 936 chrX 9465765 9465794 chrX 9466110 9466111 7 335 2.5 2.5 2.5 2.0 346 chrX 9465765 intron mgl - chrX 9465938 intron mgl - chrX 9466111 intron mgl - chrX_7_9465001 chrX_9465001 RAL-879 937 chrX 9508157 9508161 chrX 9509646 9509679 jockey 4 1510 0.0 2.0 1.0 2.0 1522 chrX 9508157 intron CG32700 - chrX 9508918 intron CG32700 - chrX 9509679 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-879 938 chrX 9599172 9599202 chrX 9599250 9599279 4 76 1.5 1.5 1.5 1.6 107 chrX 9599172 intergenic not near genes chrX 9599226 intergenic not near genes chrX 9599279 intergenic not near genes chrX_4_9595001 chrX_9595001 RAL-879 939 chrX 10027177 10027200 chrX 10027246 10027276 5 72 2.0 3.5 2.8 1.3 99 chrX 10027177 intron Cht6 + chrX 10027226 intron Cht6 + chrX 10027276 intron Cht6 + chrX_5_10025001 chrX_10025001 RAL-879 940 chrX 10550855 10550888 chrX 10552322 10552337 hobo 5 1462 2.5 2.5 2.5 1.4 1482 chrX 10550855 intron spri - chrX 10551596 intron spri - chrX 10552337 intron spri - chrX_5_10550001 chrX_10550001 RAL-879 941 chrX 10686049 10686084 chrX 10691185 10691221 roo 4 5134 2.5 1.5 2.0 1.3 5172 chrX 10686049 intron X11Lbeta + chrX 10688635 intron X11Lbeta + chrX 10691221 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-879 942 chrX 10739538 10739553 chrX 10739604 10739633 5 76 4.5 1.0 2.8 1.3 95 chrX 10739538 intron CG32676 - chrX 10739586 intron CG32676 - chrX 10739633 intron CG32676 - chrX_5_10735001 chrX_10735001 RAL-879 943 chrX 11633426 11633443 chrX 11640480 11640497 297 4 7054 0.0 3.5 1.8 1.4 7071 chrX 11633426 intron Ptp10D + chrX 11636962 intron Ptp10D + chrX 11640497 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-879 944 chrX 11692328 11692348 chrX 11692395 11692431 6 72 2.0 2.0 2.0 2.0 103 chrX 11692328 intron bif + chrX 11692380 intron bif + chrX 11692431 intron bif + chrX_6_11690001 chrX_11690001 RAL-879 945 chrX 11804679 11804687 chrX 11804783 11804791 4 104 1.0 2.5 1.8 1.4 112 chrX 11804679 intron Hsc70-3 - chrX 11804735 intron Hsc70-3 - chrX 11804791 intron Hsc70-3 - chrX_4_11800001 chrX_11800001 RAL-879 946 chrX 12094043 12094066 chrX 12094131 12094140 5 85 1.5 1.5 1.5 2.0 97 chrX 12094043 intron,intron CR43960 +,Ten-a + chrX 12094092 intron,intron CR43960 +,Ten-a + chrX 12094140 intron,intron CR43960 +,Ten-a + chrX_5_12090001 chrX_12090001 RAL-879 947 chrX 12392812 12392829 chrX 12392877 12392883 5 69 2.0 3.0 2.5 1.4 71 chrX 12392812 intergenic not near genes chrX 12392848 intergenic not near genes chrX 12392883 intergenic not near genes chrX_5_12390001 chrX_12390001 RAL-879 948 chrX 12532659 12532669 chrX 12532795 12532799 5 140 2.0 0.0 1.0 2.5 140 chrX 12532659 intron CG43921 - chrX 12532729 intron CG43921 - chrX 12532799 intron CG43921 - chrX_5_12530001 chrX_12530001 RAL-879 949 chrX 12752286 12752306 chrX 12752365 12752393 4 85 2.5 5.0 3.8 0.8 107 chrX 12752286 5` UTR CR44619 + chrX 12752340 5` UTR CR44619 + chrX 12752393 5` UTR CR44619 + chrX_4_12750001 chrX_12750001 RAL-879 950 chrX 12953903 12953927 chrX 12954040 12954045 4 133 0.0 1.5 0.8 2.2 142 chrX 12953903 intron hec - chrX 12953974 intron hec - chrX 12954045 intron hec - chrX_4_12950001 chrX_12950001 RAL-879 951 chrX 12971711 12971725 chrX 12971767 12971788 4 60 3.0 6.5 4.8 0.7 77 chrX 12971711 intron,exon CR43636 -,CG15721 + chrX 12971750 intron,exon CR43636 -,CG15721 + chrX 12971788 intron,exon CR43636 -,CG15721 + chrX_4_12970001 chrX_12970001 RAL-879 952 chrX 14105027 14105055 chrX 14114178 14114204 roo 7 9147 5.0 2.5 3.8 1.5 9177 chrX 14105027 intergenic not near genes chrX 14109616 intergenic not near genes chrX 14114204 5` UTR CR44657 + chrX_7_14105001 chrX_14105001 RAL-879 953 chrX 14487843 14487853 chrX 14487916 14487940 4 76 1.0 0.5 0.8 2.2 97 chrX 14487843 intergenic not near genes chrX 14487892 intergenic not near genes chrX 14487940 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-879 954 chrX 14636480 14636493 chrX 14641896 14641934 I-element 5 5426 3.0 3.0 3.0 1.2 5454 chrX 14636480 intron NetA - chrX 14639207 intron NetA - chrX 14641934 intron NetA - chrX_5_14635001 chrX_14635001 RAL-879 955 chrX 15373665 15373676 chrX 15373757 15373768 4 91 1.0 0.5 0.8 2.2 103 chrX 15373665 intron acj6 - chrX 15373716 intron acj6 - chrX 15373768 intron acj6 - chrX_4_15370001 chrX_15370001 RAL-879 956 chrX 15435696 15435704 chrX 15436111 15436112 rover 4 422 0.5 4.5 2.5 1.1 416 chrX 15435696 intron Cngl - chrX 15435904 intron Cngl - chrX 15436112 intron Cngl - chrX_4_15435001 chrX_15435001 RAL-879 957 chrX 15591183 15591203 chrX 15591249 15591257 5 60 0.0 0.0 0.0 5.0 74 chrX 15591183 intron CG9220 - chrX 15591220 intron CG9220 - chrX 15591257 intron CG9220 - chrX_5_15590001 chrX_15590001 RAL-879 958 chrX 16785290 16785296 chrX 16785394 16785400 4 104 1.5 3.0 2.2 1.2 110 chrX 16785290 3` UTR CG9609 - chrX 16785345 3` UTR CG9609 - chrX 16785400 3` UTR CG9609 - chrX_4_16785001 chrX_16785001 RAL-879 959 chrX 16808372 16808401 chrX 16808559 16808593 7 182 1.0 0.0 0.5 4.7 221 chrX 16808372 3` UTR,exon CR44053 -,ppk28 + chrX 16808482 3` UTR,3` UTR CR44053 -,ppk28 + chrX 16808593 3` UTR CR44053 - chrX_7_16805001 chrX_16805001 RAL-879 960 chrX 17122645 17122656 chrX 17122728 17122746 5 86 3.0 1.5 2.2 1.6 101 chrX 17122645 intron CG5004 + chrX 17122696 intron CG5004 + chrX 17122746 intron CG5004 + chrX_5_17120001 chrX_17120001 RAL-879 961 chrX 17282882 17282913 chrX 17282954 17282978 14 68 2.5 0.5 1.5 5.6 96 chrX 17282882 intron CG5445 + chrX 17282930 5` UTR CG5445 + chrX 17282978 intron CG5445 + chrX_14_17280001 chrX_17280001 RAL-879 962 chrX 17352606 17352619 chrX 17352694 17352700 5 94 0.5 2.0 1.2 2.3 94 chrX 17352606 intergenic not near genes chrX 17352653 intergenic not near genes chrX 17352700 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-879 963 chrX 18194085 18194095 chrX 18194606 18194630 BS 5 531 0.0 2.0 1.0 2.5 545 chrX 18194085 intron Frq2 + chrX 18194358 intron Frq2 + chrX 18194630 intron Frq2 + chrX_5_18190001 chrX_18190001 RAL-879 964 chrX 18230526 18230530 chrX 18235214 18235232 4 4695 24.0 22.0 23.0 0.2 4706 chrX 18230526 intergenic not near genes chrX 18232879 intergenic not near genes chrX 18235232 intergenic not near genes chrX_4_18230001 chrX_18230001 RAL-879 965 chrX 18245700 18245718 chrX 18246035 18246041 4 331 4.0 3.0 3.5 0.9 341 chrX 18245700 intergenic not near genes chrX 18245870 intergenic not near genes chrX 18246041 intergenic not near genes chrX_4_18245001 chrX_18245001 RAL-879 966 chrX 18427398 18427406 chrX 18427791 18427810 5 405 2.5 0.0 1.2 2.3 412 chrX 18427398 intergenic CG42323 + chrX 18427604 intergenic not near genes chrX 18427810 intergenic not near genes chrX_5_18425001 chrX_18425001 RAL-879 967 chrX 18749627 18749629 chrX 18749708 18749708 4 82 6.0 4.0 5.0 0.7 81 chrX 18749627 intergenic not near genes chrX 18749668 intergenic not near genes chrX 18749708 intergenic not near genes chrX_4_18745001 chrX_18745001 RAL-879 968 chrX 19109122 19109136 chrX 19109306 19109319 4 184 1.5 1.0 1.2 1.8 197 chrX 19109122 intergenic not near genes chrX 19109220 intergenic not near genes chrX 19109319 intergenic not near genes chrX_4_19105001 chrX_19105001 RAL-879 969 chrX 19240219 19240242 chrX 19240305 19240328 4 84 1.0 2.0 1.5 1.6 109 chrX 19240219 intron CG14196 - chrX 19240274 intron CG14196 - chrX 19240328 intron CG14196 - chrX_4_19240001 chrX_19240001 RAL-879 970 chrX 13057298 13057300 chrX 19242813 19242814 4 6185514 3.0 1.0 2.0 1.3 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_4_16150001 chrX_16150001 RAL-879 971 chrX 19500578 19500590 chrX 19500635 19500666 5 70 3.0 0.5 1.8 1.8 88 chrX 19500578 intron,intron CG14200 +,Pfrx + chrX 19500622 intron,intron CG14200 +,Pfrx + chrX 19500666 intron,intron CG14200 +,Pfrx + chrX_5_19500001 chrX_19500001 RAL-879 972 chrX 19593956 19593975 chrX 19594041 19594060 5 84 3.5 4.0 3.8 1.0 104 chrX 19593956 exon CG14205 + chrX 19594008 intron CG14205 + chrX 19594060 intron CG14205 + chrX_5_19590001 chrX_19590001 RAL-879 973 chrX 19983867 19983899 chrX 19983947 19983960 5 72 2.5 2.0 2.2 1.6 93 chrX 19983867 intergenic not near genes chrX 19983914 intergenic not near genes chrX 19983960 intergenic not near genes chrX_5_19980001 chrX_19980001 RAL-879 974 chrX 20105197 20105207 chrX 20105301 20105324 4 107 17.0 23.5 20.2 0.2 127 chrX 20105197 intergenic not near genes chrX 20105260 intergenic not near genes chrX 20105324 intergenic not near genes chrX_4_20105001 chrX_20105001 RAL-879 975 chrX 20105195 20105226 chrX 20105327 20105334 4 118 18.5 18.0 18.2 0.2 139 chrX 20105195 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105334 intergenic not near genes chrX_4_20105001 chrX_20105001 RAL-879 976 chrX 20122559 20122570 chrX 20122647 20122664 4 95 2.0 4.5 3.2 1.0 105 chrX 20122559 exon CG34331 + chrX 20122612 exon CG34331 + chrX 20122664 exon CG34331 + chrX_4_20120001 chrX_20120001 RAL-879 977 chrX 20312881 20312908 chrX 20312959 20312986 7 74 2.0 2.5 2.2 2.2 105 chrX 20312881 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20312986 intron CG1504 - chrX_7_20310001 chrX_20310001 RAL-879 978 chrX 20531763 20531792 chrX 20531862 20531873 4 94 1.0 0.5 0.8 2.2 110 chrX 20531763 intergenic not near genes chrX 20531818 intergenic not near genes chrX 20531873 intergenic not near genes chrX_4_20530001 chrX_20530001 RAL-879 979 chrX 20769799 20769828 chrX 20769882 20769911 4 77 2.0 3.5 2.8 1.1 112 chrX 20769799 3` UTR shakB - chrX 20769855 3` UTR shakB - chrX 20769911 3` UTR shakB - chrX_4_20765001 chrX_20765001 RAL-879 980 chrX 20940719 20940743 chrX 20942188 20942212 hobo 5 1464 2.0 1.0 1.5 2.0 1493 chrX 20940719 intergenic not near genes chrX 20941466 intergenic not near genes chrX 20942212 intergenic not near genes chrX_5_20940001 chrX_20940001 RAL-879 981 chrX 20940745 20940756 chrX 20942186 20942203 hobo 7 1452 1.0 1.0 1.0 3.5 1458 chrX 20940745 intergenic not near genes chrX 20941474 intergenic not near genes chrX 20942203 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-879 982 chrX 21086129 21086161 chrX 21087157 21087189 jockey 10 1021 2.5 1.5 2.0 3.3 1060 chrX 21086129 intergenic not near genes chrX 21086659 intergenic not near genes chrX 21087189 intergenic not near genes chrX_10_21085001 chrX_21085001 RAL-879 983 chrX 21403846 21403868 chrX 21403925 21403938 4 74 3.5 5.5 4.5 0.7 92 chrX 21403846 intergenic not near genes chrX 21403892 intergenic not near genes chrX 21403938 intergenic not near genes chrX_4_21400001 chrX_21400001 RAL-879 984 chrX 21474407 21474434 chrX 21474770 21474782 1731 4 361 3.0 2.0 2.5 1.1 375 chrX 21474407 intergenic not near genes chrX 21474594 intergenic not near genes chrX 21474782 intergenic not near genes chrX_4_21470001 chrX_21470001 RAL-879 985 chrX 21517006 21517018 chrX 21517068 21517079 6 72 3.5 6.0 4.8 1.0 73 chrX 21517006 intron CR45082 - chrX 21517042 intron CR45082 - chrX 21517079 intron CR45082 - chrX_6_21515001 chrX_21515001 RAL-879 986 chrX 22677305 22677325 chrX 22677500 22677520 5 198 2.0 2.0 2.0 1.7 215 chrX 22677305 intron CR44997 + chrX 22677412 intron CR44997 + chrX 22677520 intron CR44997 + chrX_5_22675001 chrX_22675001 RAL-879 987 chrX 22697494 22697520 chrX 22701791 22701793 Juan 6 4292 2.0 2.5 2.2 1.9 4299 chrX 22697494 intron CR44997 + chrX 22699644 intron CR44997 + chrX 22701793 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-879 988 chrX 22737259 22737282 chrX 22746698 22746720 INE-1 4 9437 2.0 2.5 2.2 1.2 9461 chrX 22737259 intron CR44997 + chrX 22741990 intron CR44997 + chrX 22746720 intron CR44997 + chrX_4_22740001 chrX_22740001 RAL-879 989 chrX 22737283 22737292 chrX 22746697 22746718 INE-1 7 9424 1.5 2.5 2.0 2.3 9435 chrX 22737283 intron CR44997 + chrX 22742000 intron CR44997 + chrX 22746718 intron CR44997 + chrX_7_22740001 chrX_22740001 RAL-879 990 chrX 22982838 22982873 chrX 22983021 22983053 10 176 2.0 1.0 1.5 4.0 215 chrX 22982838 intron,intron stnA -,stnB - chrX 22982946 intron,intron stnA -,stnB - chrX 22983053 intron,intron stnA -,stnB - chrX_10_22980001 chrX_22980001 RAL-879 991 chrY 975791 975817 chrY 975871 975955 6 97 83.0 94.5 88.8 0.1 164 chrY 975791 intergenic not near genes chrY 975873 intergenic not near genes chrY 975955 intergenic not near genes chrY_6_975001 chrY_975001 RAL-879