SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47459	47487	chr2L	52564	52592	jockey	5	5104	3.5	4.5	4.0	1.0	5133	chr2L	47459	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52592	intron	Cda5 -	chr2L_5_50001	chr2L_50001	RAL-861
9	chr2L	686935	686948	chr2L	695975	695987	roo	4	9040	1.5	4.5	3.0	1.0	9052	chr2L	686935	intron	ds -	chr2L	691461	intron	ds -	chr2L	695987	intron	ds -	chr2L_4_690001	chr2L_690001	RAL-861
14	chr2L	1220128	1220161	chr2L	1227594	1227627	blood	6	7466	6.0	1.0	3.5	1.3	7499	chr2L	1220128	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227627	intron	CG42329 +	chr2L_6_1220001	chr2L_1220001	RAL-861
18	chr2L	1678975	1679002	chr2L	1686440	1686467	blood	6	7464	0.0	2.0	1.0	3.0	7492	chr2L	1678975	intron	chinmo +	chr2L	1682721	intron	chinmo +	chr2L	1686467	intron	chinmo +	chr2L_6_1680001	chr2L_1680001	RAL-861
25	chr2L	2112129	2112146	chr2L	2119773	2119791	opus	4	7645	0.0	1.0	0.5	2.7	7662	chr2L	2112129	intergenic	not near genes	chr2L	2115960	intergenic	not near genes	chr2L	2119791	intergenic	not near genes	chr2L_4_2115001	chr2L_2115001	RAL-861
29	chr2L	2294056	2294073	chr2L	2299245	2299251	copia	4	5194	2.5	1.0	1.8	1.4	5195	chr2L	2294056	intergenic	not near genes	chr2L	2296654	intergenic	not near genes	chr2L	2299251	intergenic	not near genes	chr2L_4_2295001	chr2L_2295001	RAL-861
31	chr2L	2661219	2661228	chr2L	2663043	2663055	I-element	4	1826	2.0	1.0	1.5	1.6	1836	chr2L	2661219	intergenic	not near genes	chr2L	2662137	intergenic	not near genes	chr2L	2663055	intergenic	not near genes	chr2L_4_2660001	chr2L_2660001	RAL-861
37	chr2L	3073032	3073061	chr2L	3078233	3078242	copia	8	5199	0.0	4.0	2.0	2.7	5210	chr2L	3073032	intron	toc -	chr2L	3075637	intron	toc -	chr2L	3078242	intron	toc -	chr2L_8_3075001	chr2L_3075001	RAL-861
42	chr2L	3649786	3649794	chr2L	3654988	3654994	copia	5	5202	0.5	2.0	1.2	2.3	5208	chr2L	3649786	intron	for -	chr2L	3652390	intron	for -	chr2L	3654994	intron	for -	chr2L_5_3650001	chr2L_3650001	RAL-861
54	chr2L	4601730	4601735	chr2L	4609144	4609176	mdg1	4	7430	1.5	4.5	3.0	1.0	7446	chr2L	4601730	intron	dp -	chr2L	4605453	intron	dp -	chr2L	4609176	intron	dp -	chr2L_4_4605001	chr2L_4605001	RAL-861
65	chr2L	5827723	5827729	chr2L	5836718	5836728	roo	5	9000	7.5	3.5	5.5	0.8	9005	chr2L	5827723	intron	TrissinR +	chr2L	5832226	intron	TrissinR +	chr2L	5836728	intron	TrissinR +	chr2L_5_5830001	chr2L_5830001	RAL-861
71	chr2L	6426861	6426883	chr2L	6445121	6445143	roo	9	18259	3.5	2.0	2.8	2.4	18282	chr2L	6426861	3` UTR	CG9527 -	chr2L	6436002	intron	CG9527 -	chr2L	6445143	exon	CG9527 -	chr2L_9_6435001	chr2L_6435001	RAL-861
80	chr2L	7343327	7343335	chr2L	7350443	7350450	roo	4	7116	6.5	1.5	4.0	0.8	7123	chr2L	7343327	intron	Wnt6 +	chr2L	7346888	intron	Wnt6 +	chr2L	7350450	intron	Wnt6 +	chr2L_4_7345001	chr2L_7345001	RAL-861
81	chr2L	7343341	7343358	chr2L	7350441	7350471	roo	5	7110	3.0	1.5	2.2	1.6	7130	chr2L	7343341	intron	Wnt6 +	chr2L	7346906	intron	Wnt6 +	chr2L	7350471	intron	Wnt6 +	chr2L_5_7345001	chr2L_7345001	RAL-861
88	chr2L	7959040	7959071	chr2L	7960451	7960482	pogo	11	1409	3.5	3.5	3.5	2.4	1442	chr2L	7959040	intron	Snoo -	chr2L	7959761	intron	Snoo -	chr2L	7960482	intron	Snoo -	chr2L_11_7955001	chr2L_7955001	RAL-861
89	chr2L	7977092	7977112	chr2L	7984066	7984083	297	6	6972	1.0	3.0	2.0	2.0	6991	chr2L	7977092	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984083	intron,5` UTR	Snoo -,CG7231 +	chr2L_6_7980001	chr2L_7980001	RAL-861
90	chr2L	8013613	8013635	chr2L	8018818	8018838	copia	4	5203	2.5	0.0	1.2	1.8	5225	chr2L	8013613	intron	Tg +	chr2L	8016226	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_4_8015001	chr2L_8015001	RAL-861
92	chr2L	8452418	8452449	chr2L	8461589	8461609	roo	10	9168	4.0	2.0	3.0	2.5	9191	chr2L	8452418	intron	fu12 -	chr2L	8457014	intron	fu12 -	chr2L	8461609	intron	fu12 -	chr2L_10_8455001	chr2L_8455001	RAL-861
96	chr2L	8723125	8723146	chr2L	8731500	8731523	Tirant	5	8377	3.0	3.5	3.2	1.2	8398	chr2L	8723125	intron	raw -	chr2L	8727324	intron	raw -	chr2L	8731523	intron	raw -	chr2L_5_8725001	chr2L_8725001	RAL-861
99	chr2L	9000290	9000309	chr2L	9007800	9007819	roo	7	7510	6.0	2.5	4.2	1.3	7529	chr2L	9000290	intergenic	Try29F +	chr2L	9004054	intergenic	not near genes	chr2L	9007819	intergenic	not near genes	chr2L_7_9000001	chr2L_9000001	RAL-861
102	chr2L	9217971	9217996	chr2L	9222755	9222783	Doc	9	4782	3.5	2.0	2.8	2.4	4812	chr2L	9217971	intron	tai +	chr2L	9220377	intron	tai +	chr2L	9222783	intron	tai +	chr2L_9_9220001	chr2L_9220001	RAL-861
106	chr2L	9393500	9393528	chr2L	9396467	9396495	jockey	6	2963	3.5	5.5	4.5	1.1	2995	chr2L	9393500	intron	Shawl -	chr2L	9394998	intron	Shawl -	chr2L	9396495	intron	Shawl -	chr2L_6_9390001	chr2L_9390001	RAL-861
111	chr2L	9973733	9973756	chr2L	9980851	9980875	HMS-Beagle	6	7116	4.0	5.0	4.5	1.1	7142	chr2L	9973733	intergenic	not near genes	chr2L	9977304	intergenic	not near genes	chr2L	9980875	intergenic	not near genes	chr2L_6_9975001	chr2L_9975001	RAL-861
124	chr2L	10946941	10946975	chr2L	10956156	10956159	roo	6	9203	4.0	4.5	4.2	1.2	9218	chr2L	10946941	intron	dpr2 -	chr2L	10951550	intron	dpr2 -	chr2L	10956159	intron	dpr2 -	chr2L_6_10950001	chr2L_10950001	RAL-861
131	chr2L	11614066	11614085	chr2L	11615547	11615580	hopper2	5	1483	2.5	1.5	2.0	1.7	1514	chr2L	11614066	intron	kek2 +	chr2L	11614823	intron	kek2 +	chr2L	11615580	intron	kek2 +	chr2L_5_11610001	chr2L_11610001	RAL-861
133	chr2L	11713505	11713540	chr2L	11720973	11721007	blood	12	7464	4.0	2.0	3.0	3.0	7502	chr2L	11713505	intergenic	not near genes	chr2L	11717256	intergenic	not near genes	chr2L	11721007	intergenic	CR44143 +	chr2L_12_11715001	chr2L_11715001	RAL-861
145	chr2L	12558321	12558338	chr2L	12565449	12565463	HMS-Beagle	4	7127	1.5	1.0	1.2	1.8	7142	chr2L	12558321	intergenic	not near genes	chr2L	12561892	intergenic	not near genes	chr2L	12565463	intergenic	not near genes	chr2L_4_12560001	chr2L_12560001	RAL-861
146	chr2L	12739172	12739191	chr2L	12743952	12743972	Doc	8	4778	3.5	4.0	3.8	1.7	4800	chr2L	12739172	exon	MRP +	chr2L	12741572	intron	MRP +	chr2L	12743972	intron	MRP +	chr2L_8_12740001	chr2L_12740001	RAL-861
148	chr2L	12791602	12791639	chr2L	12795277	12795280	F-element	9	3665	1.0	3.5	2.2	2.8	3678	chr2L	12791602	intergenic	not near genes	chr2L	12793441	intergenic	not near genes	chr2L	12795280	intergenic	not near genes	chr2L_9_12790001	chr2L_12790001	RAL-861
149	chr2L	12861703	12861730	chr2L	12863169	12863171	hobo	9	1463	1.0	5.5	3.2	2.1	1468	chr2L	12861703	intergenic	not near genes	chr2L	12862437	intergenic	not near genes	chr2L	12863171	intergenic	not near genes	chr2L_9_12860001	chr2L_12860001	RAL-861
150	chr2L	12933850	12933880	chr2L	12941317	12941347	blood	7	7461	2.5	4.5	3.5	1.6	7497	chr2L	12933850	intergenic	not near genes	chr2L	12937598	intergenic	not near genes	chr2L	12941347	intergenic	not near genes	chr2L_7_12935001	chr2L_12935001	RAL-861
157	chr2L	13481462	13481481	chr2L	13482069	13482069	jockey	4	602	2.5	7.5	5.0	0.7	607	chr2L	13481462	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482069	intron	CG42784 +	chr2L_4_13480001	chr2L_13480001	RAL-861
169	chr2L	14803879	14803910	chr2L	14809082	14809113	copia	7	5201	1.5	2.5	2.0	2.3	5234	chr2L	14803879	intergenic	not near genes	chr2L	14806496	intergenic	not near genes	chr2L	14809113	intergenic	not near genes	chr2L_7_14805001	chr2L_14805001	RAL-861
171	chr2L	14889955	14889984	chr2L	14890380	14890409	jockey	9	423	3.0	1.5	2.2	2.8	454	chr2L	14889955	intergenic	not near genes	chr2L	14890182	intergenic	not near genes	chr2L	14890409	intergenic	not near genes	chr2L_9_14890001	chr2L_14890001	RAL-861
181	chr2L	15956025	15956046	chr2L	15957492	15957499	hobo	4	1463	3.5	1.5	2.5	1.1	1474	chr2L	15956025	intron	beat-Ib -	chr2L	15956762	intron	beat-Ib -	chr2L	15957499	intron	beat-Ib -	chr2L_4_15955001	chr2L_15955001	RAL-861
183	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	4	145889	16.5	18.0	17.2	0.2	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_4_16140001	chr2L_16140001	RAL-861
198	chr2L	17273202	17273226	chr2L	17277973	17277992	F-element	7	4775	4.5	2.0	3.2	1.7	4790	chr2L	17273202	intergenic	not near genes	chr2L	17275597	intergenic	not near genes	chr2L	17277992	intergenic	not near genes	chr2L_7_17275001	chr2L_17275001	RAL-861
208	chr2L	17727868	17727880	chr2L	17729335	17729347	hobo	5	1466	2.5	3.5	3.0	1.2	1479	chr2L	17727868	intron	CadN -	chr2L	17728608	intron	CadN -	chr2L	17729347	intron	CadN -	chr2L_5_17725001	chr2L_17725001	RAL-861
210	chr2L	17819940	17819954	chr2L	17825143	17825157	copia	5	5202	0.5	3.5	2.0	1.7	5217	chr2L	17819940	intron	CadN2 -	chr2L	17822548	intron	CadN2 -	chr2L	17825157	intron	CadN2 -	chr2L_5_17820001	chr2L_17820001	RAL-861
212	chr2L	17911971	17911990	chr2L	17914149	17914166	pogo	7	2177	4.5	3.0	3.8	1.5	2195	chr2L	17911971	intergenic	not near genes	chr2L	17913068	intergenic	not near genes	chr2L	17914166	intergenic	CG43271 -	chr2L_7_17910001	chr2L_17910001	RAL-861
216	chr2L	18051874	18051907	chr2L	18061020	18061054	roo	7	9144	2.0	2.0	2.0	2.3	9180	chr2L	18051874	intron	rdo +	chr2L	18056464	intron	rdo +	chr2L	18061054	intron	rdo +	chr2L_7_18055001	chr2L_18055001	RAL-861
220	chr2L	18408024	18408046	chr2L	18412808	18412830	Doc	9	4783	3.0	0.0	1.5	3.6	4806	chr2L	18408024	intergenic	not near genes	chr2L	18410427	intergenic	not near genes	chr2L	18412830	intergenic	not near genes	chr2L_9_18410001	chr2L_18410001	RAL-861
230	chr2L	19345021	19345048	chr2L	19357230	19357253	blood	6	12208	1.0	2.0	1.5	2.4	12232	chr2L	19345021	intron	dnt -	chr2L	19351137	intron	dnt -	chr2L	19357253	intron	dnt -	chr2L_6_19350001	chr2L_19350001	RAL-861
234	chr2L	19620095	19620132	chr2L	19621082	19621112	jockey	12	984	2.5	3.0	2.8	3.2	1017	chr2L	19620095	intron	Lar +	chr2L	19620604	intron	Lar +	chr2L	19621112	intron	Lar +	chr2L_12_19620001	chr2L_19620001	RAL-861
235	chr2L	19652575	19652600	chr2L	19674009	19674009	opus	6	21430	3.0	2.5	2.8	1.6	21434	chr2L	19652575	intron	Lar +	chr2L	19663292	intron	Lar +	chr2L	19674009	intron	Lar +	chr2L_6_19660001	chr2L_19660001	RAL-861
237	chr2L	19703539	19703559	chr2L	19712675	19712695	roo	4	9135	2.0	1.5	1.8	1.4	9156	chr2L	19703539	intron	Lar +	chr2L	19708117	intron	Lar +	chr2L	19712695	intron	Lar +	chr2L_4_19705001	chr2L_19705001	RAL-861
246	chr2L	20272129	20272139	chr2L	20282838	20282850	copia	7	10711	4.0	2.0	3.0	1.8	10721	chr2L	20272129	intergenic	not near genes	chr2L	20277490	intergenic	not near genes	chr2L	20282850	intergenic	not near genes	chr2L_7_20275001	chr2L_20275001	RAL-861
251	chr2L	20576222	20576251	chr2L	20583690	20583718	blood	10	7466	3.0	2.0	2.5	2.9	7496	chr2L	20576222	intergenic	not near genes	chr2L	20579970	intergenic	not near genes	chr2L	20583718	3` UTR	CR44909 -	chr2L_10_20575001	chr2L_20575001	RAL-861
256	chr2L	21020271	21020310	chr2L	21023948	21023980	NOF	16	3674	3.5	2.0	2.8	4.2	3709	chr2L	21020271	intron	CG42238 -	chr2L	21022126	intron	CG42238 -	chr2L	21023980	intron	CG42238 -	chr2L_16_21020001	chr2L_21020001	RAL-861
261	chr2L	21597027	21597061	chr2L	21604771	21604805	roo	5	7740	1.5	2.0	1.8	1.8	7778	chr2L	21597027	intergenic	not near genes	chr2L	21600916	intergenic	not near genes	chr2L	21604805	intergenic	not near genes	chr2L_5_21600001	chr2L_21600001	RAL-861
263	chr2L	21981696	21981715	chr2L	21990861	21990880	roo	6	9164	1.5	8.5	5.0	1.0	9184	chr2L	21981696	exon	CG2528 -	chr2L	21986288	intron	CG2528 -	chr2L	21990880	exon	CG2528 -	chr2L_6_21985001	chr2L_21985001	RAL-861
269	chr2L	22548932	22548938	chr2L	22550157	22550163	1360	4	1225	0.5	4.0	2.2	1.2	1231	chr2L	22548932	intergenic	CG17490 +	chr2L	22549548	intergenic	not near genes	chr2L	22550163	intergenic	CG17493 +	chr2L_4_22545001	chr2L_22545001	RAL-861
270	chr2L	22581971	22581992	chr2L	22583760	22583781	S-element	4	1788	1.5	1.0	1.2	1.8	1810	chr2L	22581971	intron	CG17494 +	chr2L	22582876	intron	CG17494 +	chr2L	22583781	intron	CG17494 +	chr2L_4_22580001	chr2L_22580001	RAL-861
273	chr2R	529323	529351	chr2R	537948	537975	Max-element	8	8620	3.0	4.5	3.8	1.7	8652	chr2R	529323	intron	CG40378 +	chr2R	533649	intron	CG40378 +	chr2R	537975	intron	CG40378 +	chr2R_8_530001	chr2R_530001	RAL-861
274	chr2R	1082376	1082385	chr2R	1087127	1087130	Doc	4	4756	5.5	3.5	4.5	0.7	4754	chr2R	1082376	intron	rl +	chr2R	1084753	intron	rl +	chr2R	1087130	intron	rl +	chr2R_4_1080001	chr2R_1080001	RAL-861
275	chr2R	3144096	3144110	chr2R	3393367	3393388	Doc	4	249276	9.0	8.5	8.8	0.4	249292	chr2R	3144096	intron	CG42596 +	chr2R	3268742	intergenic	not near genes	chr2R	3393388	intergenic	not near genes	chr2R_4_3265001	chr2R_3265001	RAL-861
293	chr2R	5869278	5869301	chr2R	5874353	5874363	flea	10	5072	3.5	2.0	2.8	2.6	5085	chr2R	5869278	intergenic	not near genes	chr2R	5871820	intergenic	not near genes	chr2R	5874363	intergenic	not near genes	chr2R_10_5870001	chr2R_5870001	RAL-861
294	chr2R	6096723	6096752	chr2R	6101921	6101945	BS	5	5192	5.5	6.0	5.8	0.7	5222	chr2R	6096723	intron	EcR -	chr2R	6099334	intron	EcR -	chr2R	6101945	intron	EcR -	chr2R_5_6095001	chr2R_6095001	RAL-861
305	chr2R	7139946	7139956	chr2R	7141436	7141448	hopper2	4	1490	2.5	6.0	4.2	0.8	1502	chr2R	7139946	intergenic	not near genes	chr2R	7140697	intergenic	not near genes	chr2R	7141448	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	RAL-861
306	chr2R	7235830	7235853	chr2R	7240908	7240937	jockey	11	5086	3.5	1.5	2.5	3.1	5107	chr2R	7235830	intergenic	not near genes	chr2R	7238384	intergenic	not near genes	chr2R	7240937	intergenic	not near genes	chr2R_11_7235001	chr2R_7235001	RAL-861
309	chr2R	7815673	7815697	chr2R	7822140	7822166	Burdock	5	6468	2.0	1.5	1.8	1.8	6493	chr2R	7815673	intergenic	CG1882 +	chr2R	7818920	intergenic	not near genes	chr2R	7822166	3` UTR	cathD -	chr2R_5_7815001	chr2R_7815001	RAL-861
310	chr2R	7869199	7869222	chr2R	7873976	7873983	Doc	7	4777	1.0	2.0	1.5	2.8	4784	chr2R	7869199	intron	Dgk -	chr2R	7871591	intron	Dgk -	chr2R	7873983	intron	Dgk -	chr2R_7_7870001	chr2R_7870001	RAL-861
315	chr2R	8330873	8330891	chr2R	8331346	8331354	roo	4	477	1.5	1.0	1.2	1.8	481	chr2R	8330873	intron	pdm3 +	chr2R	8331114	intron	pdm3 +	chr2R	8331354	intron	pdm3 +	chr2R_4_8330001	chr2R_8330001	RAL-861
316	chr2R	8398214	8398242	chr2R	8402994	8403022	Doc	4	4778	4.5	3.5	4.0	0.8	4808	chr2R	8398214	intron	CG2121 -	chr2R	8400618	intron	CG2121 -	chr2R	8403022	intron	CG2121 -	chr2R_4_8400001	chr2R_8400001	RAL-861
327	chr2R	9726623	9726644	chr2R	9734174	9734195	17.6	6	7550	1.5	1.0	1.2	2.7	7572	chr2R	9726623	intron	sqa -	chr2R	9730409	intron	sqa -	chr2R	9734195	intron	sqa -	chr2R_6_9730001	chr2R_9730001	RAL-861
329	chr2R	10005853	10005872	chr2R	10007018	10007036	1360	4	1164	5.0	2.0	3.5	0.9	1183	chr2R	10005853	intron	Pka-R2 -	chr2R	10006444	intron	Pka-R2 -	chr2R	10007036	intron	Pka-R2 -	chr2R_4_10005001	chr2R_10005001	RAL-861
334	chr2R	10585586	10585591	chr2R	10594153	10594174	Tirant	6	8577	2.5	3.0	2.8	1.6	8588	chr2R	10585586	intron	psq +	chr2R	10589880	intron	psq +	chr2R	10594174	intron	psq +	chr2R_6_10585001	chr2R_10585001	RAL-861
336	chr2R	11009814	11009848	chr2R	11018986	11019012	roo	6	9167	1.0	3.5	2.2	1.9	9198	chr2R	11009814	intron	luna -	chr2R	11014413	intron	luna -	chr2R	11019012	intron	luna -	chr2R_6_11010001	chr2R_11010001	RAL-861
340	chr2R	11207820	11207852	chr2R	11208007	11208045	BS	6	192	5.0	3.0	4.0	1.2	225	chr2R	11207820	intron	shn +	chr2R	11207932	intron	shn +	chr2R	11208045	intron	shn +	chr2R_6_11205001	chr2R_11205001	RAL-861
343	chr2R	11415526	11415551	chr2R	11418675	11418690	opus	4	3146	2.0	6.0	4.0	0.8	3164	chr2R	11415526	intron	Drip -	chr2R	11417108	intron	Drip -	chr2R	11418690	intron	Drip -	chr2R_4_11415001	chr2R_11415001	RAL-861
349	chr2R	12481142	12481167	chr2R	12482938	12482970	roo	5	1796	3.5	2.5	3.0	1.2	1828	chr2R	12481142	exon	Dh44-R2 +	chr2R	12482056	intron	Dh44-R2 +	chr2R	12482970	intron	Dh44-R2 +	chr2R_5_12480001	chr2R_12480001	RAL-861
350	chr2R	12789294	12789320	chr2R	12797655	12797683	roo	7	8358	0.5	1.5	1.0	3.5	8389	chr2R	12789294	intron,3` UTR	sca +,CR45137 -	chr2R	12793488	intron,intron	sca +,CR45137 -	chr2R	12797683	intron,3` UTR	sca +,CR45137 -	chr2R_7_12790001	chr2R_12790001	RAL-861
353	chr2R	13136845	13136855	chr2R	13141643	13141653	Doc	4	4798	6.0	3.5	4.8	0.7	4808	chr2R	13136845	exon	Cap-G +	chr2R	13139249	intron	Cap-G +	chr2R	13141653	intron	Cap-G +	chr2R_4_13135001	chr2R_13135001	RAL-861
355	chr2R	13580515	13580525	chr2R	13580865	13580874	jockey	5	349	0.0	5.5	2.8	1.3	359	chr2R	13580515	3` UTR	CG6191 -	chr2R	13580694	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580874	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_5_13580001	chr2R_13580001	RAL-861
358	chr2R	13905605	13905631	chr2R	13907585	13907606	Rt1a	5	1977	4.5	3.0	3.8	1.0	2001	chr2R	13905605	intron	shot -	chr2R	13906606	intron	shot -	chr2R	13907606	intron	shot -	chr2R_5_13905001	chr2R_13905001	RAL-861
363	chr2R	14394234	14394247	chr2R	14399023	14399036	Doc	5	4789	3.5	1.0	2.2	1.6	4802	chr2R	14394234	intergenic	not near genes	chr2R	14396635	intergenic	not near genes	chr2R	14399036	intergenic	not near genes	chr2R_5_14395001	chr2R_14395001	RAL-861
367	chr2R	15004734	15004759	chr2R	15005057	15005088	jockey	5	324	1.0	2.5	1.8	1.8	354	chr2R	15004734	intergenic	not near genes	chr2R	15004911	intergenic	not near genes	chr2R	15005088	intergenic	not near genes	chr2R_5_15000001	chr2R_15000001	RAL-861
368	chr2R	15015455	15015485	chr2R	15022879	15022908	mdg1	12	7422	5.5	1.5	3.5	2.7	7453	chr2R	15015455	intron	hbs +	chr2R	15019182	intron	hbs +	chr2R	15022908	intron	hbs +	chr2R_12_15015001	chr2R_15015001	RAL-861
369	chr2R	15084984	15085012	chr2R	15092032	15092040	297	6	7045	1.0	2.0	1.5	2.4	7056	chr2R	15084984	intergenic	not near genes	chr2R	15088512	intergenic	not near genes	chr2R	15092040	5` UTR	CR44457 +	chr2R_6_15085001	chr2R_15085001	RAL-861
370	chr2R	15119318	15119340	chr2R	15127797	15127820	Tirant	4	8480	6.0	4.0	5.0	0.7	8502	chr2R	15119318	intron	chn +	chr2R	15123569	intron	chn +	chr2R	15127820	intron	chn +	chr2R_4_15120001	chr2R_15120001	RAL-861
386	chr2R	17147256	17147269	chr2R	17152267	17152283	jockey	4	5019	2.5	4.0	3.2	1.0	5027	chr2R	17147256	intergenic	not near genes	chr2R	17149770	intergenic	not near genes	chr2R	17152283	intergenic	not near genes	chr2R_4_17145001	chr2R_17145001	RAL-861
387	chr2R	17236506	17236536	chr2R	17241710	17241740	copia	7	5201	1.0	2.0	1.5	2.8	5234	chr2R	17236506	intron	mbl +	chr2R	17239123	intron	mbl +	chr2R	17241740	intron	mbl +	chr2R_7_17235001	chr2R_17235001	RAL-861
399	chr2R	18575800	18575831	chr2R	18581987	18582019	3S18	7	6186	2.0	3.5	2.8	1.8	6219	chr2R	18575800	intron	GEFmeso -	chr2R	18578910	intron	GEFmeso -	chr2R	18582019	intron	GEFmeso -	chr2R_7_18575001	chr2R_18575001	RAL-861
400	chr2R	18590869	18590890	chr2R	18600017	18600040	roo	6	9150	4.0	3.5	3.8	1.2	9171	chr2R	18590869	intron	GEFmeso -	chr2R	18595454	intron	GEFmeso -	chr2R	18600040	intron	GEFmeso -	chr2R_6_18595001	chr2R_18595001	RAL-861
407	chr2R	19776597	19776626	chr2R	19779920	19779949	jockey	6	3320	2.0	3.0	2.5	1.7	3352	chr2R	19776597	intergenic	not near genes	chr2R	19778273	intergenic	not near genes	chr2R	19779949	intergenic	not near genes	chr2R_6_19775001	chr2R_19775001	RAL-861
409	chr2R	19957428	19957448	chr2R	19962630	19962632	copia	6	5197	4.5	2.5	3.5	1.3	5204	chr2R	19957428	intergenic	CG44623 +	chr2R	19960030	intergenic	not near genes	chr2R	19962632	intergenic	not near genes	chr2R_6_19960001	chr2R_19960001	RAL-861
414	chr2R	20783317	20783333	chr2R	20788089	20788103	F-element	5	4769	0.5	2.0	1.2	2.3	4786	chr2R	20783317	intergenic	not near genes	chr2R	20785710	intergenic	not near genes	chr2R	20788103	intergenic	CG43666 -	chr2R_5_20785001	chr2R_20785001	RAL-861
422	chr2R	21809531	21809558	chr2R	21817771	21817798	roo	6	8237	1.5	4.0	2.8	1.6	8267	chr2R	21809531	intergenic	not near genes	chr2R	21813664	intergenic	not near genes	chr2R	21817798	intergenic	not near genes	chr2R_6_21810001	chr2R_21810001	RAL-861
429	chr2R	22349708	22349726	chr2R	22351472	22351503	jockey	6	1776	1.5	3.0	2.2	1.9	1795	chr2R	22349708	intron	Liprin-gamma -	chr2R	22350606	intron	Liprin-gamma -	chr2R	22351503	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	RAL-861
430	chr2R	22360381	22360406	chr2R	22360813	22360819	jockey	5	426	2.0	1.0	1.5	2.0	438	chr2R	22360381	intron	Liprin-gamma -	chr2R	22360600	intron	Liprin-gamma -	chr2R	22360819	intron	Liprin-gamma -	chr2R_5_22360001	chr2R_22360001	RAL-861
432	chr2R	22525762	22525774	chr2R	22529317	22529329	jockey	6	3554	1.5	2.5	2.0	2.0	3567	chr2R	22525762	intron	px -	chr2R	22527546	intron	px -	chr2R	22529329	intron	px -	chr2R_6_22525001	chr2R_22525001	RAL-861
437	chr2R	22774970	22774996	chr2R	22775389	22775397	jockey	9	417	7.0	3.5	5.2	1.5	427	chr2R	22774970	intron	CG42260 -	chr2R	22775184	intron	CG42260 -	chr2R	22775397	intron	CG42260 -	chr2R_9_22775001	chr2R_22775001	RAL-861
445	chr2R	23402611	23402633	chr2R	23407687	23407700	flea	6	5074	5.0	5.0	5.0	1.0	5089	chr2R	23402611	intergenic	CG3520 -	chr2R	23405156	intergenic	not near genes	chr2R	23407700	intergenic	not near genes	chr2R_6_23405001	chr2R_23405001	RAL-861
458	chr2R	24353445	24353460	chr2R	24361794	24361803	roo	6	8352	2.0	2.0	2.0	2.0	8358	chr2R	24353445	intron,intron	bs +,CR44811 -	chr2R	24357624	intron,intron	bs +,CR44811 -	chr2R	24361803	intron,intron	bs +,CR44811 -	chr2R_6_24355001	chr2R_24355001	RAL-861
461	chr2R	24727883	24727914	chr2R	24735391	24735422	mdg1	10	7507	1.0	2.5	1.8	3.6	7539	chr2R	24727883	intron	Mid1 -	chr2R	24731652	intron	Mid1 -	chr2R	24735422	intron	Mid1 -	chr2R_10_24730001	chr2R_24730001	RAL-861
462	chr2R	24763608	24763644	chr2R	24765584	24765620	G2	10	1970	2.5	6.0	4.2	1.9	2012	chr2R	24763608	exon	CG3894 +	chr2R	24764614	intron	CG3894 +	chr2R	24765620	exon	CG3894 +	chr2R_10_24760001	chr2R_24760001	RAL-861
470	chr3L	110215	110236	chr3L	119382	119403	roo	4	9159	2.0	3.5	2.8	1.1	9188	chr3L	110215	intergenic	not near genes	chr3L	114809	intergenic	not near genes	chr3L	119403	intergenic	not near genes	chr3L_4_110001	chr3L_110001	RAL-861
473	chr3L	402693	402702	chr3L	409746	409755	297	4	7052	8.5	3.0	5.8	0.6	7062	chr3L	402693	intergenic	not near genes	chr3L	406224	intergenic	not near genes	chr3L	409755	intergenic	not near genes	chr3L_4_405001	chr3L_405001	RAL-861
476	chr3L	858010	858032	chr3L	866481	866507	Tirant	6	8470	1.0	4.0	2.5	1.7	8497	chr3L	858010	intergenic	not near genes	chr3L	862258	intergenic	not near genes	chr3L	866507	5` UTR	CG12502 +	chr3L_6_860001	chr3L_860001	RAL-861
478	chr3L	925176	925208	chr3L	932602	932632	mdg1	9	7426	2.0	2.5	2.2	2.8	7456	chr3L	925176	intron	Glut1 +	chr3L	928904	intron	Glut1 +	chr3L	932632	intron	Glut1 +	chr3L_9_925001	chr3L_925001	RAL-861
480	chr3L	939784	939795	chr3L	940891	940908	jockey	6	1116	5.5	5.0	5.2	1.0	1124	chr3L	939784	intron	Glut1 +	chr3L	940346	intron	Glut1 +	chr3L	940908	intron	Glut1 +	chr3L_6_940001	chr3L_940001	RAL-861
485	chr3L	1219595	1219625	chr3L	1227328	1227358	412	14	7731	1.5	2.0	1.8	5.0	7763	chr3L	1219595	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227358	intron	mwh +	chr3L_14_1220001	chr3L_1220001	RAL-861
487	chr3L	1506004	1506014	chr3L	1513601	1513611	17.6	4	7597	6.5	2.0	4.2	0.8	7607	chr3L	1506004	intron,intron	Psa +,cue -	chr3L	1509808	intron,intron	Psa +,cue -	chr3L	1513611	intron,intron	Psa +,cue -	chr3L_4_1505001	chr3L_1505001	RAL-861
488	chr3L	1506024	1506031	chr3L	1513597	1513603	17.6	4	7580	4.0	2.0	3.0	1.0	7579	chr3L	1506024	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513603	intron,intron	Psa +,cue -	chr3L_4_1505001	chr3L_1505001	RAL-861
495	chr3L	2447506	2447538	chr3L	2456662	2456686	roo	9	9151	1.0	5.5	3.2	2.1	9180	chr3L	2447506	intron	CG45186 +	chr3L	2452096	intron	CG45186 +	chr3L	2456686	intron	CG45186 +	chr3L_9_2450001	chr3L_2450001	RAL-861
507	chr3L	3281464	3281475	chr3L	3281931	3281954	Doc	10	485	3.0	2.5	2.8	2.6	490	chr3L	3281464	intron	CG12017 +	chr3L	3281709	intron	CG12017 +	chr3L	3281954	intron	CG12017 +	chr3L_10_3280001	chr3L_3280001	RAL-861
509	chr3L	3475074	3475110	chr3L	3475517	3475550	jockey	12	442	0.5	3.5	2.0	4.0	476	chr3L	3475074	intron	CG42324 +	chr3L	3475312	intron	CG42324 +	chr3L	3475550	intron	CG42324 +	chr3L_12_3475001	chr3L_3475001	RAL-861
510	chr3L	3601302	3601329	chr3L	3606613	3606640	copia	8	5311	5.0	3.5	4.2	1.5	5338	chr3L	3601302	intron	Eip63E +	chr3L	3603971	intron	Eip63E +	chr3L	3606640	intron	Eip63E +	chr3L_8_3600001	chr3L_3600001	RAL-861
522	chr3L	5537734	5537751	chr3L	5538076	5538093	jockey	4	342	1.5	3.5	2.5	1.1	359	chr3L	5537734	intergenic	not near genes	chr3L	5537914	intergenic	CG10625 -	chr3L	5538093	intergenic	CG10625 -	chr3L_4_5535001	chr3L_5535001	RAL-861
525	chr3L	5926319	5926334	chr3L	5926509	5926524	BS	4	190	6.0	5.5	5.8	0.6	205	chr3L	5926319	intron	Vap-33B +	chr3L	5926422	intron	Vap-33B +	chr3L	5926524	intron	Vap-33B +	chr3L_4_5925001	chr3L_5925001	RAL-861
526	chr3L	5926335	5926350	chr3L	5926503	5926540	BS	7	176	2.5	4.0	3.2	1.7	205	chr3L	5926335	intron	Vap-33B +	chr3L	5926438	intron	Vap-33B +	chr3L	5926540	intron	Vap-33B +	chr3L_7_5925001	chr3L_5925001	RAL-861
529	chr3L	6220912	6220941	chr3L	6230064	6230088	roo	7	9151	5.5	2.5	4.0	1.4	9176	chr3L	6220912	5` UTR	pncr008:3L +	chr3L	6225500	intergenic	not near genes	chr3L	6230088	intergenic	not near genes	chr3L_7_6225001	chr3L_6225001	RAL-861
535	chr3L	6887521	6887551	chr3L	6895013	6895040	roo	5	7489	3.0	2.0	2.5	1.4	7519	chr3L	6887521	intergenic	not near genes	chr3L	6891280	intergenic	not near genes	chr3L	6895040	intergenic	not near genes	chr3L_5_6890001	chr3L_6890001	RAL-861
545	chr3L	7377324	7377345	chr3L	7380429	7380442	297	4	3103	1.5	3.5	2.5	1.1	3118	chr3L	7377324	intron	SMSr -	chr3L	7378883	intron	SMSr -	chr3L	7380442	intron	SMSr -	chr3L_4_7375001	chr3L_7375001	RAL-861
550	chr3L	7886518	7886547	chr3L	7889033	7889065	Stalker4	6	2515	0.0	0.5	0.2	5.0	2547	chr3L	7886518	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889065	intron	CG32365 +	chr3L_6_7885001	chr3L_7885001	RAL-861
551	chr3L	7985363	7985394	chr3L	7987691	7987722	NOF	5	2324	2.5	3.0	2.8	1.3	2359	chr3L	7985363	intron	nmo +	chr3L	7986542	intron	nmo +	chr3L	7987722	intron	nmo +	chr3L_5_7985001	chr3L_7985001	RAL-861
556	chr3L	8791272	8791305	chr3L	8796691	8796711	I-element	8	5415	1.5	0.0	0.8	4.4	5439	chr3L	8791272	exon	Fhos +	chr3L	8793992	intron	Fhos +	chr3L	8796711	intron	Fhos +	chr3L_8_8790001	chr3L_8790001	RAL-861
560	chr3L	9076925	9076958	chr3L	9084485	9084518	412	11	7557	3.0	3.5	3.2	2.6	7593	chr3L	9076925	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084518	exon	Tequila +	chr3L_11_9080001	chr3L_9080001	RAL-861
561	chr3L	9130557	9130580	chr3L	9134318	9134341	412	7	3758	4.0	3.5	3.8	1.5	3784	chr3L	9130557	intergenic	bol -	chr3L	9132449	intergenic	not near genes	chr3L	9134341	intergenic	Dhpr +	chr3L_7_9130001	chr3L_9130001	RAL-861
562	chr3L	9164718	9164731	chr3L	9166168	9166198	hobo	4	1456	2.0	1.0	1.5	1.6	1480	chr3L	9164718	intron	Rdl -	chr3L	9165458	intron	Rdl -	chr3L	9166198	intron	Rdl -	chr3L_4_9165001	chr3L_9165001	RAL-861
564	chr3L	9219256	9219272	chr3L	9219911	9219937	jockey	8	656	3.0	1.5	2.2	2.5	681	chr3L	9219256	intergenic	not near genes	chr3L	9219596	intergenic	not near genes	chr3L	9219937	intergenic	not near genes	chr3L_8_9215001	chr3L_9215001	RAL-861
566	chr3L	9270619	9270641	chr3L	9278374	9278376	roo	7	7750	1.5	1.0	1.2	3.2	7757	chr3L	9270619	intron	GluRIB +	chr3L	9274498	intron	GluRIB +	chr3L	9278376	intron	GluRIB +	chr3L_7_9270001	chr3L_9270001	RAL-861
572	chr3L	9575914	9575936	chr3L	9580988	9581013	jockey	4	5076	5.5	2.5	4.0	0.8	5099	chr3L	9575914	intron	CG42673 +	chr3L	9578464	intron	CG42673 +	chr3L	9581013	intron	CG42673 +	chr3L_4_9575001	chr3L_9575001	RAL-861
579	chr3L	10414963	10414972	chr3L	10417330	10417338	Doc	4	2368	1.0	2.5	1.8	1.4	2375	chr3L	10414963	intergenic	CG12362 +	chr3L	10416150	intergenic	not near genes	chr3L	10417338	intergenic	not near genes	chr3L_4_10415001	chr3L_10415001	RAL-861
587	chr3L	11264471	11264498	chr3L	11271418	11271450	17.6	5	6946	1.5	1.5	1.5	2.0	6979	chr3L	11264471	intergenic	not near genes	chr3L	11267960	intergenic	not near genes	chr3L	11271450	intergenic	not near genes	chr3L_5_11265001	chr3L_11265001	RAL-861
588	chr3L	11329696	11329728	chr3L	11332895	11332917	jockey	7	3198	1.0	2.0	1.5	2.8	3221	chr3L	11329696	intergenic	not near genes	chr3L	11331306	intergenic	not near genes	chr3L	11332917	intergenic	not near genes	chr3L_7_11330001	chr3L_11330001	RAL-861
589	chr3L	11564800	11564813	chr3L	11572414	11572429	412	6	7620	1.0	3.0	2.0	2.0	7629	chr3L	11564800	exon	CG33267 +	chr3L	11568614	intron	CG33267 +	chr3L	11572429	exon	CG33267 +	chr3L_6_11565001	chr3L_11565001	RAL-861
591	chr3L	11723086	11723108	chr3L	11727877	11727882	Doc	4	4789	6.0	0.0	3.0	1.0	4796	chr3L	11723086	3` UTR	Bmcp +	chr3L	11725484	intron	Bmcp +	chr3L	11727882	3` UTR	Bmcp +	chr3L_4_11725001	chr3L_11725001	RAL-861
604	chr3L	12874933	12874959	chr3L	12877223	12877251	jockey	8	2292	2.5	1.5	2.0	2.7	2318	chr3L	12874933	intergenic	not near genes	chr3L	12876092	intergenic	not near genes	chr3L	12877251	intergenic	not near genes	chr3L_8_12875001	chr3L_12875001	RAL-861
605	chr3L	12919285	12919302	chr3L	12924756	12924770	Rt1c	4	5470	5.5	2.0	3.8	0.8	5485	chr3L	12919285	intergenic	not near genes	chr3L	12922028	intergenic	not near genes	chr3L	12924770	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-861
609	chr3L	13525175	13525186	chr3L	13532964	13532982	roo	5	7793	2.5	6.5	4.5	0.9	7807	chr3L	13525175	intergenic	not near genes	chr3L	13529078	intergenic	not near genes	chr3L	13532982	intergenic	not near genes	chr3L_5_13525001	chr3L_13525001	RAL-861
613	chr3L	14245568	14245594	chr3L	14245661	14245688	1360	7	94	2.5	2.5	2.5	2.0	120	chr3L	14245568	3` UTR	CR44561 -	chr3L	14245628	3` UTR	CR44561 -	chr3L	14245688	3` UTR	CR44561 -	chr3L_7_14245001	chr3L_14245001	RAL-861
615	chr3L	14295984	14296013	chr3L	14296470	14296499	roo	9	485	3.0	1.0	2.0	3.0	515	chr3L	14295984	intron	fz +	chr3L	14296242	intron	fz +	chr3L	14296499	intron	fz +	chr3L_9_14295001	chr3L_14295001	RAL-861
616	chr3L	14312026	14312057	chr3L	14316836	14316851	X-element	5	4806	2.0	0.5	1.2	2.3	4825	chr3L	14312026	exon	fz +	chr3L	14314438	intron	fz +	chr3L	14316851	intron	fz +	chr3L_5_14310001	chr3L_14310001	RAL-861
617	chr3L	14468458	14468473	chr3L	14473650	14473679	copia	4	5202	1.0	0.5	0.8	2.2	5221	chr3L	14468458	intron	bbg -	chr3L	14471068	intron	bbg -	chr3L	14473679	intron	bbg -	chr3L_4_14470001	chr3L_14470001	RAL-861
623	chr3L	15085053	15085080	chr3L	15086216	15086228	1360	6	1162	2.0	3.0	2.5	1.7	1175	chr3L	15085053	intron	cp309 -	chr3L	15085640	intron	cp309 -	chr3L	15086228	intron	cp309 -	chr3L_6_15085001	chr3L_15085001	RAL-861
633	chr3L	15899228	15899258	chr3L	15899793	15899812	jockey	4	556	1.0	1.5	1.2	1.8	584	chr3L	15899228	intergenic	pHCl -	chr3L	15899520	intergenic	pHCl -	chr3L	15899812	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-861
638	chr3L	16443848	16443875	chr3L	16446188	16446200	Doc	6	2333	0.0	2.0	1.0	3.0	2352	chr3L	16443848	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445024	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446200	intron,intron	CG33158 +,dsx-c73A -	chr3L_6_16445001	chr3L_16445001	RAL-861
640	chr3L	16493983	16493994	chr3L	16494496	16494508	jockey	5	515	12.5	2.5	7.5	0.6	525	chr3L	16493983	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494246	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494508	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_5_16490001	chr3L_16490001	RAL-861
643	chr3L	16616524	16616531	chr3L	16621851	16621854	297	4	5326	1.5	2.5	2.0	1.3	5330	chr3L	16616524	3` UTR	Abl -	chr3L	16619189	3` UTR	Abl -	chr3L	16621854	3` UTR	Abl -	chr3L_4_16615001	chr3L_16615001	RAL-861
646	chr3L	16945731	16945740	chr3L	16954882	16954886	roo	5	9149	6.0	3.0	4.5	0.9	9155	chr3L	16945731	exon	Obp73a +	chr3L	16950308	intergenic	not near genes	chr3L	16954886	5` UTR	Nc73EF +	chr3L_5_16950001	chr3L_16950001	RAL-861
647	chr3L	16945746	16945761	chr3L	16954879	16954907	roo	7	9139	3.5	2.5	3.0	1.8	9161	chr3L	16945746	exon	Obp73a +	chr3L	16950326	intergenic	not near genes	chr3L	16954907	5` UTR	Nc73EF +	chr3L_7_16950001	chr3L_16950001	RAL-861
659	chr3L	18528643	18528660	chr3L	18537790	18537804	roo	5	9153	1.5	0.5	1.0	2.5	9161	chr3L	18528643	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537804	intergenic	not near genes	chr3L_5_18530001	chr3L_18530001	RAL-861
664	chr3L	18772409	18772440	chr3L	18781090	18781121	roo	7	8676	2.0	3.0	2.5	2.0	8712	chr3L	18772409	intron	ftz-f1 -	chr3L	18776765	intron	ftz-f1 -	chr3L	18781121	intron	ftz-f1 -	chr3L_7_18775001	chr3L_18775001	RAL-861
665	chr3L	18833778	18833799	chr3L	18834942	18834963	1360	5	1159	3.0	1.0	2.0	1.7	1185	chr3L	18833778	intron	Indy -	chr3L	18834370	intron	Indy -	chr3L	18834963	intron	Indy -	chr3L_5_18830001	chr3L_18830001	RAL-861
666	chr3L	19008852	19008857	chr3L	19009186	19009195	jockey	4	337	2.0	6.0	4.0	0.8	343	chr3L	19008852	intron	nkd -	chr3L	19009024	intron	nkd -	chr3L	19009195	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-861
669	chr3L	19117040	19117073	chr3L	19124487	19124519	mdg1	10	7440	2.5	1.0	1.8	3.6	7479	chr3L	19117040	intron	CG14082 -	chr3L	19120780	intron	CG14082 -	chr3L	19124519	intron	CG14082 -	chr3L_10_19120001	chr3L_19120001	RAL-861
671	chr3L	19208075	19208092	chr3L	19209434	19209461	Doc	6	1368	3.0	3.0	3.0	1.5	1386	chr3L	19208075	intron	fz2 -	chr3L	19208768	intron	fz2 -	chr3L	19209461	intron	fz2 -	chr3L_6_19205001	chr3L_19205001	RAL-861
674	chr3L	19861820	19861853	chr3L	19863608	19863641	S-element	9	1788	1.0	0.5	0.8	5.0	1821	chr3L	19861820	5` UTR	CR45433 +	chr3L	19862730	intergenic	not near genes	chr3L	19863641	intergenic	not near genes	chr3L_9_19860001	chr3L_19860001	RAL-861
687	chr3L	21014925	21014942	chr3L	21023401	21023423	Tirant	5	8479	4.0	4.0	4.0	1.0	8498	chr3L	21014925	intron	skd -	chr3L	21019174	intron	skd -	chr3L	21023423	intron	skd -	chr3L_5_21015001	chr3L_21015001	RAL-861
689	chr3L	21151868	21151892	chr3L	21156948	21156967	flea	7	5082	2.5	1.5	2.0	2.3	5099	chr3L	21151868	intron	Ac78C -	chr3L	21154418	intron	Ac78C -	chr3L	21156967	intron	Ac78C -	chr3L_7_21150001	chr3L_21150001	RAL-861
697	chr3L	21749318	21749332	chr3L	21754478	21754480	Doc	4	5157	4.5	3.0	3.8	0.8	5162	chr3L	21749318	intron	Syn1 -	chr3L	21751899	intron	Syn1 -	chr3L	21754480	intron	Syn1 -	chr3L_4_21750001	chr3L_21750001	RAL-861
706	chr3L	22555778	22555802	chr3L	22563238	22563242	blood	9	7454	2.5	3.5	3.0	2.2	7464	chr3L	22555778	intergenic	not near genes	chr3L	22559510	intergenic	not near genes	chr3L	22563242	intergenic	not near genes	chr3L_9_22555001	chr3L_22555001	RAL-861
707	chr3L	22577637	22577655	chr3L	22582412	22582428	Doc	6	4783	1.5	4.0	2.8	1.6	4791	chr3L	22577637	intergenic	not near genes	chr3L	22580032	intergenic	not near genes	chr3L	22582428	3` UTR	CG14459 -	chr3L_6_22580001	chr3L_22580001	RAL-861
708	chr3L	22617189	22617221	chr3L	22624640	22624664	blood	7	7450	4.0	3.0	3.5	1.6	7475	chr3L	22617189	intron	CG14459 -	chr3L	22620926	intron	CG14459 -	chr3L	22624664	intron	CG14459 -	chr3L_7_22620001	chr3L_22620001	RAL-861
710	chr3L	22761385	22761419	chr3L	22766819	22766853	Ivk	5	5434	1.0	1.0	1.0	2.5	5468	chr3L	22761385	intron	SPoCk +	chr3L	22764119	intron	SPoCk +	chr3L	22766853	intron	SPoCk +	chr3L_5_22760001	chr3L_22760001	RAL-861
713	chr3L	22865989	22866012	chr3L	22867120	22867145	Doc	5	1129	1.5	1.0	1.2	2.3	1156	chr3L	22865989	intron	CG33170 +	chr3L	22866567	intron	CG33170 +	chr3L	22867145	intron	CG33170 +	chr3L_5_22865001	chr3L_22865001	RAL-861
720	chr3L	24168787	24168819	chr3L	24176114	24176147	ZAM	8	7323	3.5	3.0	3.2	1.9	7360	chr3L	24168787	intron	Snap25 +	chr3L	24172467	intron	Snap25 +	chr3L	24176147	intron	Snap25 +	chr3L_8_24170001	chr3L_24170001	RAL-861
730	chr3R	4753241	4753273	chr3R	4757543	4757549	F-element	7	4298	3.5	5.5	4.5	1.3	4308	chr3R	4753241	intron,intron	atms +,CG44098 -	chr3R	4755395	intron,intron	atms +,CG44098 -	chr3R	4757549	intron,exon	atms +,CG44098 -	chr3R_7_4755001	chr3R_4755001	RAL-861
733	chr3R	4887491	4887511	chr3R	4894868	4894878	rover	5	7371	1.5	5.5	3.5	1.1	7387	chr3R	4887491	intergenic	not near genes	chr3R	4891184	intergenic	not near genes	chr3R	4894878	intergenic	not near genes	chr3R_5_4890001	chr3R_4890001	RAL-861
734	chr3R	5045845	5045867	chr3R	5052947	5052969	HMS-Beagle	4	7102	1.0	0.5	0.8	2.2	7124	chr3R	5045845	intron	CR43635 -	chr3R	5049407	intergenic	not near genes	chr3R	5052969	intergenic	CR45588 -	chr3R_4_5045001	chr3R_5045001	RAL-861
737	chr3R	5746016	5746046	chr3R	5746257	5746286	pogo	7	239	1.5	1.5	1.5	2.8	270	chr3R	5746016	3` UTR	Madm +	chr3R	5746151	3` UTR	Madm +	chr3R	5746286	3` UTR	Madm +	chr3R_7_5745001	chr3R_5745001	RAL-861
738	chr3R	5822380	5822404	chr3R	5823546	5823571	1360	6	1167	4.0	3.5	3.8	1.2	1191	chr3R	5822380	3` UTR	CG2023 -	chr3R	5822976	3` UTR	CG2023 -	chr3R	5823571	3` UTR	CG2023 -	chr3R_6_5820001	chr3R_5820001	RAL-861
741	chr3R	5927565	5927591	chr3R	5927802	5927831	pogo	6	239	1.0	4.0	2.5	1.7	266	chr3R	5927565	intron	CG34113 -	chr3R	5927698	intron	CG34113 -	chr3R	5927831	intron	CG34113 -	chr3R_6_5925001	chr3R_5925001	RAL-861
743	chr3R	6015966	6015992	chr3R	6024443	6024461	Tirant	9	8478	2.0	3.0	2.5	2.6	8495	chr3R	6015966	intergenic	not near genes	chr3R	6020214	intergenic	not near genes	chr3R	6024461	intergenic	not near genes	chr3R_9_6020001	chr3R_6020001	RAL-861
745	chr3R	6158510	6158542	chr3R	6167090	6167125	Tirant	7	8582	5.0	3.0	4.0	1.4	8615	chr3R	6158510	intergenic	not near genes	chr3R	6162818	intergenic	not near genes	chr3R	6167125	intergenic	CG1077 +	chr3R_7_6160001	chr3R_6160001	RAL-861
746	chr3R	6175184	6175201	chr3R	6182451	6182460	HMS-Beagle2	5	7268	0.5	2.5	1.5	2.0	7276	chr3R	6175184	intergenic	Osi1 +	chr3R	6178822	intron	CR45194 +	chr3R	6182460	intergenic	CR45194 +	chr3R_5_6175001	chr3R_6175001	RAL-861
747	chr3R	6206282	6206319	chr3R	6206499	6206536	BS	13	215	2.0	3.5	2.8	3.4	254	chr3R	6206282	exon	Osi24 +	chr3R	6206409	intron	Osi24 +	chr3R	6206536	intron	Osi24 +	chr3R_13_6205001	chr3R_6205001	RAL-861
758	chr3R	7729469	7729492	chr3R	7737407	7737429	Stalker2	4	7936	3.5	5.0	4.2	0.8	7960	chr3R	7729469	intergenic	not near genes	chr3R	7733449	intergenic	not near genes	chr3R	7737429	intergenic	not near genes	chr3R_4_7730001	chr3R_7730001	RAL-861
759	chr3R	7849653	7849677	chr3R	7850818	7850835	1360	7	1160	2.0	1.5	1.8	2.5	1182	chr3R	7849653	intron	CG34384 +	chr3R	7850244	intron	CG34384 +	chr3R	7850835	intron	CG34384 +	chr3R_7_7850001	chr3R_7850001	RAL-861
767	chr3R	8403005	8403040	chr3R	8412171	8412182	roo	14	9160	1.5	3.5	2.5	4.0	9177	chr3R	8403005	intron	CG45263 -	chr3R	8407594	intron	CG45263 -	chr3R	8412182	intron	CG45263 -	chr3R_14_8405001	chr3R_8405001	RAL-861
770	chr3R	8570484	8570507	chr3R	8575120	8575125	HMS-Beagle	8	4634	3.5	8.5	6.0	1.1	4641	chr3R	8570484	intergenic	not near genes	chr3R	8572804	intergenic	not near genes	chr3R	8575125	intergenic	not near genes	chr3R_8_8570001	chr3R_8570001	RAL-861
772	chr3R	8601776	8601786	chr3R	8610929	8610939	roo	5	9153	5.5	3.0	4.2	1.0	9163	chr3R	8601776	intron	5-HT2B +	chr3R	8606358	intron	5-HT2B +	chr3R	8610939	intron	5-HT2B +	chr3R_5_8605001	chr3R_8605001	RAL-861
776	chr3R	8707375	8707386	chr3R	8709795	8709827	jockey	6	2437	3.5	3.0	3.2	1.4	2452	chr3R	8707375	intergenic	not near genes	chr3R	8708601	intergenic	not near genes	chr3R	8709827	intergenic	not near genes	chr3R_6_8705001	chr3R_8705001	RAL-861
779	chr3R	9319574	9319606	chr3R	9320009	9320038	jockey	6	430	3.0	4.5	3.8	1.2	464	chr3R	9319574	intron	CG8861 -	chr3R	9319806	intron	CG8861 -	chr3R	9320038	intron	CG8861 -	chr3R_6_9315001	chr3R_9315001	RAL-861
804	chr3R	11841064	11841093	chr3R	11846249	11846284	BS	4	5190	2.0	1.5	1.8	1.4	5220	chr3R	11841064	intron	CG6959 -	chr3R	11843674	intron	CG6959 -	chr3R	11846284	intron	CG6959 -	chr3R_4_11840001	chr3R_11840001	RAL-861
815	chr3R	13135829	13135859	chr3R	13138004	13138034	pogo	5	2175	2.5	1.0	1.8	1.8	2205	chr3R	13135829	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136932	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138034	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13135001	chr3R_13135001	RAL-861
820	chr3R	13314112	13314128	chr3R	13318880	13318916	Doc	5	4778	1.0	1.0	1.0	2.5	4804	chr3R	13314112	intergenic	not near genes	chr3R	13316514	intergenic	not near genes	chr3R	13318916	intergenic	CG45080 -	chr3R_5_13315001	chr3R_13315001	RAL-861
826	chr3R	14246392	14246413	chr3R	14247887	14247901	jockey	5	1494	6.0	2.5	4.2	1.0	1509	chr3R	14246392	intergenic	not near genes	chr3R	14247146	intergenic	not near genes	chr3R	14247901	intergenic	not near genes	chr3R_5_14245001	chr3R_14245001	RAL-861
837	chr3R	15079811	15079838	chr3R	15080051	15080070	pogo	6	239	0.0	1.0	0.5	4.0	259	chr3R	15079811	3` UTR	CG6966 -	chr3R	15079940	3` UTR	CG6966 -	chr3R	15080070	3` UTR	CG6966 -	chr3R_6_15075001	chr3R_15075001	RAL-861
839	chr3R	15618737	15618764	chr3R	15626211	15626238	blood	5	7474	0.5	3.0	1.8	1.8	7501	chr3R	15618737	intergenic	not near genes	chr3R	15622488	intergenic	not near genes	chr3R	15626238	intergenic	not near genes	chr3R_5_15620001	chr3R_15620001	RAL-861
851	chr3R	16756321	16756353	chr3R	16762512	16762544	diver	6	6191	3.0	1.0	2.0	2.0	6223	chr3R	16756321	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762544	intron	bxd -	chr3R_6_16755001	chr3R_16755001	RAL-861
855	chr3R	17294670	17294696	chr3R	17295098	17295124	BS	4	424	2.5	3.0	2.8	1.1	454	chr3R	17294670	intergenic	not near genes	chr3R	17294897	intergenic	not near genes	chr3R	17295124	intergenic	not near genes	chr3R_4_17290001	chr3R_17290001	RAL-861
858	chr3R	17925877	17925889	chr3R	17927325	17927356	hobo	6	1458	2.5	5.5	4.0	1.2	1479	chr3R	17925877	intron	cpo +	chr3R	17926616	intron	cpo +	chr3R	17927356	intron	cpo +	chr3R_6_17925001	chr3R_17925001	RAL-861
885	chr3R	20266528	20266538	chr3R	20272999	20273009	Burdock	4	6471	1.0	3.5	2.2	1.2	6481	chr3R	20266528	intron	cic +	chr3R	20269768	intron	cic +	chr3R	20273009	intron	cic +	chr3R_4_20265001	chr3R_20265001	RAL-861
897	chr3R	21609007	21609029	chr3R	21611640	21611640	NOF	6	2629	2.5	5.5	4.0	1.2	2633	chr3R	21609007	intron	InR -	chr3R	21610324	intron	InR -	chr3R	21611640	intron	InR -	chr3R_6_21610001	chr3R_21610001	RAL-861
901	chr3R	21761123	21761152	chr3R	21768512	21768520	mdg1	6	7386	3.5	4.0	3.8	1.2	7397	chr3R	21761123	exon	CG42335 +	chr3R	21764822	intron	CG42335 +	chr3R	21768520	exon	CG42335 +	chr3R_6_21760001	chr3R_21760001	RAL-861
911	chr3R	22450547	22450570	chr3R	22453186	22453205	NOF	7	2638	4.5	3.5	4.0	1.4	2658	chr3R	22450547	intron	CG34376 +	chr3R	22451876	intron	CG34376 +	chr3R	22453205	intron	CG34376 +	chr3R_7_22450001	chr3R_22450001	RAL-861
927	chr3R	23684713	23684730	chr3R	23685182	23685195	roo	4	471	0.5	5.0	2.8	1.1	482	chr3R	23684713	intron	CG18754 +	chr3R	23684954	intron	CG18754 +	chr3R	23685195	exon	CG18754 +	chr3R_4_23680001	chr3R_23680001	RAL-861
930	chr3R	24072106	24072114	chr3R	24072531	24072541	jockey	4	432	4.5	7.0	5.8	0.6	435	chr3R	24072106	intron	4EHP -	chr3R	24072324	intron	4EHP -	chr3R	24072541	intron	4EHP -	chr3R_4_24070001	chr3R_24070001	RAL-861
931	chr3R	24076923	24076942	chr3R	24078390	24078409	hobo	7	1466	4.0	6.0	5.0	1.2	1486	chr3R	24076923	intron	4EHP -	chr3R	24077666	intron	4EHP -	chr3R	24078409	intron	4EHP -	chr3R_7_24075001	chr3R_24075001	RAL-861
933	chr3R	24207217	24207236	chr3R	24212293	24212312	flea	5	5076	3.0	2.5	2.8	1.3	5095	chr3R	24207217	intron	twin -	chr3R	24209764	intron	twin -	chr3R	24212312	intron	twin -	chr3R_5_24205001	chr3R_24205001	RAL-861
938	chr3R	24730101	24730124	chr3R	24732474	24732487	Doc	8	2372	3.0	1.0	2.0	2.7	2386	chr3R	24730101	intron	tok +	chr3R	24731294	intron	tok +	chr3R	24732487	intron	tok +	chr3R_8_24730001	chr3R_24730001	RAL-861
951	chr3R	25832692	25832723	chr3R	25841874	25841884	roo	6	9175	3.5	2.5	3.0	1.5	9192	chr3R	25832692	exon	alpha4GT2 +	chr3R	25837288	intron	alpha4GT2 +	chr3R	25841884	exon	alpha4GT2 +	chr3R_6_25835001	chr3R_25835001	RAL-861
961	chr3R	26376322	26376357	chr3R	26385482	26385496	roo	7	9152	1.0	0.5	0.8	3.9	9174	chr3R	26376322	intergenic	not near genes	chr3R	26380909	intergenic	not near genes	chr3R	26385496	intergenic	not near genes	chr3R_7_26380001	chr3R_26380001	RAL-861
965	chr3R	26558328	26558359	chr3R	26565640	26565671	Stalker4	10	7306	1.0	3.0	2.0	3.3	7343	chr3R	26558328	intron	scrib +	chr3R	26562000	intron	scrib +	chr3R	26565671	intron	scrib +	chr3R_10_26560001	chr3R_26560001	RAL-861
967	chr3R	26642728	26642762	chr3R	26643121	26643151	jockey	6	392	2.0	5.0	3.5	1.3	423	chr3R	26642728	intergenic	not near genes	chr3R	26642940	intergenic	not near genes	chr3R	26643151	intergenic	not near genes	chr3R_6_26640001	chr3R_26640001	RAL-861
970	chr3R	26810561	26810586	chr3R	26811046	26811070	roo	5	485	0.5	5.0	2.8	1.3	509	chr3R	26810561	intron	Tl +	chr3R	26810816	intron	Tl +	chr3R	26811070	intron	Tl +	chr3R_5_26810001	chr3R_26810001	RAL-861
973	chr3R	27140519	27140534	chr3R	27148129	27148144	412	5	7610	8.5	5.0	6.8	0.6	7625	chr3R	27140519	intron	CG6051 -	chr3R	27144332	intron	CG6051 -	chr3R	27148144	intron	CG6051 -	chr3R_5_27140001	chr3R_27140001	RAL-861
982	chr3R	28068498	28068519	chr3R	28073933	28073961	I-element	4	5440	0.5	1.0	0.8	2.2	5463	chr3R	28068498	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073961	intron	CG34362 +	chr3R_4_28070001	chr3R_28070001	RAL-861
987	chr3R	28253340	28253355	chr3R	28255847	28255865	jockey	7	2509	4.5	2.0	3.2	1.7	2525	chr3R	28253340	intergenic	not near genes	chr3R	28254602	intergenic	not near genes	chr3R	28255865	intergenic	not near genes	chr3R_7_28250001	chr3R_28250001	RAL-861
991	chr3R	29079383	29079416	chr3R	29080755	29080782	NOF	6	1371	4.5	2.5	3.5	1.3	1399	chr3R	29079383	intron	CG11873 +	chr3R	29080082	intron	CG11873 +	chr3R	29080782	intron	CG11873 +	chr3R_6_29080001	chr3R_29080001	RAL-861
1002	chr3R	29738264	29738297	chr3R	29739731	29739759	hobo	8	1463	2.0	2.0	2.0	2.7	1495	chr3R	29738264	intergenic	CG1969 +,CG7598 +	chr3R	29739012	intron	CG1969 +	chr3R	29739759	5` UTR	CG1969 +	chr3R_8_29735001	chr3R_29735001	RAL-861
1004	chr3R	29882023	29882043	chr3R	29891180	29891198	roo	4	9156	3.0	4.5	3.8	0.8	9175	chr3R	29882023	intron	CG31038 +	chr3R	29886610	intron	CG31038 +	chr3R	29891198	intron	CG31038 +	chr3R_4_29885001	chr3R_29885001	RAL-861
1009	chr3R	30084850	30084877	chr3R	30086315	30086330	hobo	10	1462	1.5	7.5	4.5	1.8	1480	chr3R	30084850	intron	sima +	chr3R	30085590	intron	sima +	chr3R	30086330	intron	sima +	chr3R_10_30085001	chr3R_30085001	RAL-861
1010	chr3R	30317325	30317356	chr3R	30324917	30324941	roo	10	7591	3.0	2.0	2.5	2.9	7616	chr3R	30317325	intron	hdc +	chr3R	30321133	intron	hdc +	chr3R	30324941	intron	hdc +	chr3R_10_30320001	chr3R_30320001	RAL-861
1015	chr3R	30480485	30480488	chr3R	30482948	30482955	jockey	5	2465	4.5	6.0	5.2	0.8	2470	chr3R	30480485	intron	PH4alphaEFB +	chr3R	30481720	intron	PH4alphaEFB +	chr3R	30482955	intron	PH4alphaEFB +	chr3R_5_30480001	chr3R_30480001	RAL-861
1016	chr3R	30480492	30480513	chr3R	30482943	30482981	jockey	14	2465	2.0	3.5	2.8	3.7	2489	chr3R	30480492	intron	PH4alphaEFB +	chr3R	30481736	intron	PH4alphaEFB +	chr3R	30482981	intron	PH4alphaEFB +	chr3R_14_30480001	chr3R_30480001	RAL-861
1020	chr3R	30679517	30679552	chr3R	30686986	30687021	blood	10	7468	3.0	2.0	2.5	2.9	7504	chr3R	30679517	intergenic	not near genes	chr3R	30683269	intergenic	not near genes	chr3R	30687021	intergenic	not near genes	chr3R_10_30680001	chr3R_30680001	RAL-861
1025	chr3R	31074237	31074259	chr3R	31081835	31081857	springer	5	7595	1.0	5.5	3.2	1.2	7620	chr3R	31074237	intron	Sox100B +	chr3R	31078047	intron	Sox100B +	chr3R	31081857	intron	Sox100B +	chr3R_5_31075001	chr3R_31075001	RAL-861
1028	chr3R	31279372	31279408	chr3R	31285563	31285598	diver	5	6189	2.5	1.5	2.0	1.7	6226	chr3R	31279372	intergenic	not near genes	chr3R	31282485	intergenic	not near genes	chr3R	31285598	intergenic	not near genes	chr3R_5_31280001	chr3R_31280001	RAL-861
1030	chr3R	31413087	31413121	chr3R	31418287	31418321	copia	14	5200	1.0	0.5	0.8	7.8	5234	chr3R	31413087	intron	Gprk2 +	chr3R	31415704	intron	Gprk2 +	chr3R	31418321	intron	Gprk2 +	chr3R_14_31415001	chr3R_31415001	RAL-861
1033	chr3R	31691530	31691564	chr3R	31696296	31696327	Doc	7	4764	2.5	6.0	4.2	1.3	4797	chr3R	31691530	intergenic	not near genes	chr3R	31693928	intergenic	not near genes	chr3R	31696327	intergenic	not near genes	chr3R_7_31690001	chr3R_31690001	RAL-861
1035	chr3R	31997991	31998023	chr3R	32005460	32005493	blood	13	7468	2.0	3.5	2.8	3.4	7502	chr3R	31997991	intron	heph -	chr3R	32001742	intron	heph -	chr3R	32005493	intron	heph -	chr3R_13_32000001	chr3R_32000001	RAL-861
1036	chr4	671617	671636	chr4	680187	680206	Tirant	8	8577	6.0	5.0	5.5	1.2	8589	chr4	671617	intron	CG11360 +	chr4	675912	intron	CG11360 +	chr4	680206	intron	CG11360 +	chr4_8_675001	chr4_675001	RAL-861
1037	chrX	428421	428443	chrX	434602	434605	3S18	4	6178	5.5	0.5	3.0	1.0	6184	chrX	428421	intron	CG32816 -	chrX	431513	intron	CG32816 -	chrX	434605	intron	CG32816 -	chrX_4_430001	chrX_430001	RAL-861
1045	chrX	827617	827630	chrX	835409	835422	roo	4	7792	2.5	2.5	2.5	1.1	7805	chrX	827617	intron	CG43867 -	chrX	831520	intron	CG43867 -	chrX	835422	intron	CG43867 -	chrX_4_830001	chrX_830001	RAL-861
1046	chrX	906702	906719	chrX	908491	908508	S-element	7	1788	3.0	3.5	3.2	1.7	1806	chrX	906702	intron	CG43867 -	chrX	907605	intron	CG43867 -	chrX	908508	intron	CG43867 -	chrX_7_905001	chrX_905001	RAL-861
1051	chrX	1518042	1518074	chrX	1523444	1523476	jockey	7	5400	3.5	4.0	3.8	1.5	5434	chrX	1518042	intergenic	inc +	chrX	1520759	intergenic	not near genes	chrX	1523476	intergenic	not near genes	chrX_7_1520001	chrX_1520001	RAL-861
1052	chrX	1627987	1628006	chrX	1635440	1635467	gtwin	6	7464	3.0	1.5	2.2	1.9	7480	chrX	1627987	intron,intron	Mur2B -,br +	chrX	1631727	intron,intron	Mur2B -,br +	chrX	1635467	intron,intron	Mur2B -,br +	chrX_6_1630001	chrX_1630001	RAL-861
1056	chrX	2399838	2399858	chrX	2408188	2408211	roo	7	8350	4.0	3.5	3.8	1.5	8373	chrX	2399838	intergenic	not near genes	chrX	2404024	intergenic	not near genes	chrX	2408211	intergenic	not near genes	chrX_7_2400001	chrX_2400001	RAL-861
1061	chrX	3597554	3597583	chrX	3619721	3619751	roo	5	22164	2.0	1.0	1.5	2.0	22197	chrX	3597554	intron	AstA-R1 +	chrX	3608652	intron	AstA-R1 +	chrX	3619751	intron	AstA-R1 +	chrX_5_3605001	chrX_3605001	RAL-861
1063	chrX	3842323	3842349	chrX	3842564	3842590	pogo	7	241	1.5	2.0	1.8	2.5	267	chrX	3842323	intron	ec +	chrX	3842456	intron	ec +	chrX	3842590	intron	ec +	chrX_7_3840001	chrX_3840001	RAL-861
1067	chrX	4763251	4763283	chrX	4763735	4763770	Stalker4	6	485	4.0	1.5	2.8	1.6	519	chrX	4763251	intergenic	not near genes	chrX	4763510	intergenic	not near genes	chrX	4763770	intergenic	not near genes	chrX_6_4760001	chrX_4760001	RAL-861
1068	chrX	4792385	4792405	chrX	4792815	4792826	jockey	4	429	5.5	2.5	4.0	0.8	441	chrX	4792385	intergenic	not near genes	chrX	4792606	intergenic	not near genes	chrX	4792826	intergenic	not near genes	chrX_4_4790001	chrX_4790001	RAL-861
1070	chrX	5338707	5338724	chrX	5339960	5339976	jockey	4	1253	5.5	2.0	3.8	0.8	1269	chrX	5338707	intergenic	not near genes	chrX	5339342	intergenic	not near genes	chrX	5339976	intergenic	SK +	chrX_4_5335001	chrX_5335001	RAL-861
1075	chrX	5883821	5883838	chrX	5884059	5884078	pogo	5	239	0.5	3.5	2.0	1.7	257	chrX	5883821	intron	CR45668 -	chrX	5883950	intron	CR45668 -	chrX	5884078	intron	CR45668 -	chrX_5_5880001	chrX_5880001	RAL-861
1078	chrX	6335223	6335242	chrX	6337732	6337752	Tirant	7	2510	0.5	6.0	3.2	1.7	2529	chrX	6335223	intergenic	not near genes	chrX	6336488	intergenic	not near genes	chrX	6337752	intergenic	CG3842 +	chrX_7_6335001	chrX_6335001	RAL-861
1079	chrX	6392886	6392895	chrX	6397635	6397660	Doc	7	4760	2.5	5.0	3.8	1.5	4774	chrX	6392886	intergenic	not near genes	chrX	6395273	intergenic	not near genes	chrX	6397660	intergenic	not near genes	chrX_7_6395001	chrX_6395001	RAL-861
1080	chrX	6562828	6562844	chrX	6571301	6571326	Tirant	8	8479	1.5	5.0	3.2	1.9	8498	chrX	6562828	intron	CG34417 +	chrX	6567077	intron	CG34417 +	chrX	6571326	intron	CG34417 +	chrX_8_6565001	chrX_6565001	RAL-861
1081	chrX	7023600	7023633	chrX	7030990	7031023	Tabor	10	7389	4.5	3.5	4.0	2.0	7423	chrX	7023600	intron	CG12541 -	chrX	7027312	intron	CG12541 -	chrX	7031023	intron	CG12541 -	chrX_10_7025001	chrX_7025001	RAL-861
1084	chrX	7702910	7702930	chrX	7703348	7703365	jockey	4	438	3.0	2.0	2.5	1.1	455	chrX	7702910	intron	CHES-1-like -	chrX	7703138	intron	CHES-1-like -	chrX	7703365	intron	CHES-1-like -	chrX_4_7700001	chrX_7700001	RAL-861
1089	chrX	8922334	8922356	chrX	8922767	8922789	jockey	4	426	3.5	2.0	2.8	1.1	455	chrX	8922334	intron	rdgA +	chrX	8922562	intron	rdgA +	chrX	8922789	intron	rdgA +	chrX_4_8920001	chrX_8920001	RAL-861
1090	chrX	8948759	8948786	chrX	8956269	8956291	roo	5	7509	0.0	3.0	1.5	2.0	7532	chrX	8948759	intron	rdgA +	chrX	8952525	intron	rdgA +	chrX	8956291	intron	rdgA +	chrX_5_8950001	chrX_8950001	RAL-861
1094	chrX	9575808	9575824	chrX	9576113	9576117	mdg3	6	308	1.5	1.5	1.5	2.4	309	chrX	9575808	intron,exon	CG32699 -,CG42395 -	chrX	9575962	intron,intron	CG32699 -,CG42395 -	chrX	9576117	intron,intron	CG32699 -,CG42395 -	chrX_6_9575001	chrX_9575001	RAL-861
1101	chrX	10550860	10550887	chrX	10552327	10552354	hobo	9	1466	2.5	3.5	3.0	2.2	1494	chrX	10550860	intron	spri -	chrX	10551607	intron	spri -	chrX	10552354	intron	spri -	chrX_9_10550001	chrX_10550001	RAL-861
1104	chrX	11633416	11633445	chrX	11640470	11640497	297	4	7053	2.5	1.0	1.8	1.4	7081	chrX	11633416	intron	Ptp10D +	chrX	11636956	intron	Ptp10D +	chrX	11640497	intron	Ptp10D +	chrX_4_11635001	chrX_11635001	RAL-861
1110	chrX	13429465	13429486	chrX	13430613	13430618	jockey	4	1140	2.0	1.5	1.8	1.4	1153	chrX	13429465	intergenic	not near genes	chrX	13430042	intergenic	not near genes	chrX	13430618	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-861
1114	chrX	14105021	14105052	chrX	14114172	14114176	roo	5	9142	2.5	3.0	2.8	1.3	9155	chrX	14105021	intergenic	not near genes	chrX	14109598	intergenic	not near genes	chrX	14114176	5` UTR	CR44657 +	chrX_5_14105001	chrX_14105001	RAL-861
1115	chrX	14157598	14157620	chrX	14163248	14163277	297	5	5655	0.0	1.5	0.8	2.8	5679	chrX	14157598	intergenic	not near genes	chrX	14160438	intergenic	not near genes	chrX	14163277	intergenic	not near genes	chrX_5_14160001	chrX_14160001	RAL-861
1117	chrX	14589699	14589706	chrX	14589917	14589944	pogo	4	234	0.0	1.0	0.5	2.7	245	chrX	14589699	intron	CG9413 -	chrX	14589822	intron	CG9413 -	chrX	14589944	intron	CG9413 -	chrX_4_14585001	chrX_14585001	RAL-861
1121	chrX	15413056	15413082	chrX	15417352	15417357	Juan	5	4295	3.5	3.0	3.2	1.2	4301	chrX	15413056	intron	Cngl -	chrX	15415206	intron	Cngl -	chrX	15417357	intron	Cngl -	chrX_5_15415001	chrX_15415001	RAL-861
1136	chrX	19710074	19710104	chrX	19711860	19711890	S-element	4	1786	0.5	2.0	1.2	1.8	1816	chrX	19710074	intron	meso18E -	chrX	19710982	intron	meso18E -	chrX	19711890	intron	meso18E -	chrX_4_19710001	chrX_19710001	RAL-861
1141	chrX	20377327	20377346	chrX	20378794	20378813	hobo	6	1467	2.0	5.5	3.8	1.2	1486	chrX	20377327	intergenic	not near genes	chrX	20378070	intergenic	not near genes	chrX	20378813	intergenic	not near genes	chrX_6_20375001	chrX_20375001	RAL-861
1145	chrX	20836731	20836754	chrX	20844333	20844356	roo	6	7602	0.0	3.0	1.5	2.4	7625	chrX	20836731	intron	shakB -	chrX	20840544	intron	shakB -	chrX	20844356	intron	shakB -	chrX_6_20840001	chrX_20840001	RAL-861
1146	chrX	20940718	20940754	chrX	20942187	20942205	hobo	7	1466	4.0	2.0	3.0	1.8	1487	chrX	20940718	intergenic	not near genes	chrX	20941462	intergenic	not near genes	chrX	20942205	intergenic	not near genes	chrX_7_20940001	chrX_20940001	RAL-861
1147	chrX	21086146	21086162	chrX	21087175	21087175	jockey	4	1025	2.0	2.5	2.2	1.2	1029	chrX	21086146	intergenic	not near genes	chrX	21086660	intergenic	not near genes	chrX	21087175	intergenic	not near genes	chrX_4_21085001	chrX_21085001	RAL-861