SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47459 47487 chr2L 52564 52592 jockey 5 5104 3.5 4.5 4.0 1.0 5133 chr2L 47459 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_5_50001 chr2L_50001 RAL-861 2 chr2L 259495 259514 chr2L 259758 259777 6 262 3.5 3.5 3.5 1.3 282 chr2L 259495 intron CG3645 - chr2L 259636 intron CG3645 - chr2L 259777 intron CG3645 - chr2L_6_255001 chr2L_255001 RAL-861 3 chr2L 325135 325154 chr2L 325194 325231 6 70 5.5 4.0 4.8 1.0 96 chr2L 325135 intron Plc21C + chr2L 325183 intron Plc21C + chr2L 325231 intron Plc21C + chr2L_6_325001 chr2L_325001 RAL-861 4 chr2L 371449 371450 chr2L 371527 371529 4 79 1.0 2.5 1.8 1.4 80 chr2L 371449 intergenic not near genes chr2L 371489 intergenic not near genes chr2L 371529 intergenic not near genes chr2L_4_370001 chr2L_370001 RAL-861 5 chr2L 436893 436904 chr2L 436970 436981 4 77 1.0 2.0 1.5 1.6 88 chr2L 436893 intron ex + chr2L 436937 intron ex + chr2L 436981 intron ex + chr2L_4_435001 chr2L_435001 RAL-861 6 chr2L 477819 477850 chr2L 477905 477905 9 78 2.0 1.5 1.8 3.2 86 chr2L 477819 intron,exon ush +,cbt - chr2L 477862 intron,exon ush +,cbt - chr2L 477905 intron,exon ush +,cbt - chr2L_9_475001 chr2L_475001 RAL-861 7 chr2L 590624 590637 chr2L 590722 590738 4 98 2.5 4.5 3.5 0.9 114 chr2L 590624 intron Gsc - chr2L 590681 intron Gsc - chr2L 590738 intron Gsc - chr2L_4_590001 chr2L_590001 RAL-861 8 chr2L 628495 628519 chr2L 628619 628643 7 122 2.0 2.0 2.0 2.3 148 chr2L 628495 intergenic CR45369 +,CG2839 + chr2L 628569 intergenic CR45369 +,CG2839 + chr2L 628643 intergenic CR45369 +,CG2839 + chr2L_7_625001 chr2L_625001 RAL-861 9 chr2L 686935 686948 chr2L 695975 695987 roo 4 9040 1.5 4.5 3.0 1.0 9052 chr2L 686935 intron ds - chr2L 691461 intron ds - chr2L 695987 intron ds - chr2L_4_690001 chr2L_690001 RAL-861 10 chr2L 763597 763629 chr2L 763673 763695 5 70 2.0 1.0 1.5 2.0 98 chr2L 763597 intergenic not near genes chr2L 763646 intergenic not near genes chr2L 763695 intergenic not near genes chr2L_5_760001 chr2L_760001 RAL-861 11 chr2L 795270 795281 chr2L 795380 795390 5 109 2.5 0.5 1.5 2.0 120 chr2L 795270 intergenic not near genes chr2L 795330 intergenic not near genes chr2L 795390 intergenic not near genes chr2L_5_795001 chr2L_795001 RAL-861 12 chr2L 1035557 1035592 chr2L 1035634 1035669 11 74 4.5 3.0 3.8 2.3 112 chr2L 1035557 intron IA-2 - chr2L 1035613 intron IA-2 - chr2L 1035669 intron IA-2 - chr2L_11_1035001 chr2L_1035001 RAL-861 13 chr2L 1126679 1126705 chr2L 1126747 1126779 6 68 1.0 1.5 1.2 2.7 100 chr2L 1126679 intron Pino - chr2L 1126729 intron Pino - chr2L 1126779 intron Pino - chr2L_6_1125001 chr2L_1125001 RAL-861 14 chr2L 1220128 1220161 chr2L 1227594 1227627 blood 6 7466 6.0 1.0 3.5 1.3 7499 chr2L 1220128 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-861 15 chr2L 1318852 1318869 chr2L 1318986 1318990 4 131 1.5 1.0 1.2 1.8 138 chr2L 1318852 intergenic not near genes chr2L 1318921 intergenic not near genes chr2L 1318990 intergenic not near genes chr2L_4_1315001 chr2L_1315001 RAL-861 16 chr2L 1482014 1482030 chr2L 1482094 1482110 5 80 3.0 1.0 2.0 1.7 96 chr2L 1482014 intergenic not near genes chr2L 1482062 intergenic not near genes chr2L 1482110 intergenic not near genes chr2L_5_1480001 chr2L_1480001 RAL-861 17 chr2L 1622812 1622841 chr2L 1622898 1622927 7 81 1.0 3.0 2.0 2.3 115 chr2L 1622812 3` UTR CR44603 - chr2L 1622870 3` UTR CR44603 - chr2L 1622927 3` UTR CR44603 - chr2L_7_1620001 chr2L_1620001 RAL-861 18 chr2L 1678975 1679002 chr2L 1686440 1686467 blood 6 7464 0.0 2.0 1.0 3.0 7492 chr2L 1678975 intron chinmo + chr2L 1682721 intron chinmo + chr2L 1686467 intron chinmo + chr2L_6_1680001 chr2L_1680001 RAL-861 19 chr2L 1721828 1721835 chr2L 1721912 1721919 4 84 1.0 3.0 2.0 1.3 91 chr2L 1721828 intron Rim2 - chr2L 1721874 intron Rim2 - chr2L 1721919 intron Rim2 - chr2L_4_1720001 chr2L_1720001 RAL-861 20 chr2L 1721840 1721850 chr2L 1721909 1721933 4 76 0.5 2.5 1.5 1.6 93 chr2L 1721840 intron Rim2 - chr2L 1721886 intron Rim2 - chr2L 1721933 intron Rim2 - chr2L_4_1720001 chr2L_1720001 RAL-861 21 chr2L 1920795 1920825 chr2L 1920872 1920909 6 80 0.5 1.0 0.8 3.3 114 chr2L 1920795 intron CG7337 + chr2L 1920852 intron CG7337 + chr2L 1920909 intron CG7337 + chr2L_6_1920001 chr2L_1920001 RAL-861 22 chr2L 1948622 1948658 chr2L 1948729 1948765 4 105 0.0 0.0 0.0 4.0 143 chr2L 1948622 intergenic not near genes chr2L 1948694 intergenic not near genes chr2L 1948765 intergenic not near genes chr2L_4_1945001 chr2L_1945001 RAL-861 23 chr2L 2068812 2068840 chr2L 2068991 2069024 8 183 1.5 2.0 1.8 2.9 212 chr2L 2068812 intron dpr3 - chr2L 2068918 intron dpr3 - chr2L 2069024 intron dpr3 - chr2L_8_2065001 chr2L_2065001 RAL-861 24 chr2L 2097057 2097073 chr2L 2097305 2097321 6 245 1.0 1.0 1.0 3.0 264 chr2L 2097057 intron dpr3 - chr2L 2097189 intron dpr3 - chr2L 2097321 intron dpr3 - chr2L_6_2095001 chr2L_2095001 RAL-861 25 chr2L 2112129 2112146 chr2L 2119773 2119791 opus 4 7645 0.0 1.0 0.5 2.7 7662 chr2L 2112129 intergenic not near genes chr2L 2115960 intergenic not near genes chr2L 2119791 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-861 26 chr2L 2236201 2236232 chr2L 2236280 2236283 4 71 2.5 0.5 1.5 1.6 82 chr2L 2236201 intron Sec24CD - chr2L 2236242 intron Sec24CD - chr2L 2236283 intron Sec24CD - chr2L_4_2235001 chr2L_2235001 RAL-861 27 chr2L 2260809 2260834 chr2L 2260895 2260918 7 85 4.5 2.0 3.2 1.7 109 chr2L 2260809 intergenic not near genes chr2L 2260864 intergenic not near genes chr2L 2260918 intergenic not near genes chr2L_7_2260001 chr2L_2260001 RAL-861 28 chr2L 2290601 2290616 chr2L 2290661 2290692 4 65 1.0 2.5 1.8 1.4 91 chr2L 2290601 exon robl22E - chr2L 2290646 intron robl22E - chr2L 2290692 intron robl22E - chr2L_4_2290001 chr2L_2290001 RAL-861 29 chr2L 2294056 2294073 chr2L 2299245 2299251 copia 4 5194 2.5 1.0 1.8 1.4 5195 chr2L 2294056 intergenic not near genes chr2L 2296654 intergenic not near genes chr2L 2299251 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-861 30 chr2L 2462715 2462734 chr2L 2462848 2462865 4 132 1.5 3.5 2.5 1.1 150 chr2L 2462715 intergenic not near genes chr2L 2462790 intergenic not near genes chr2L 2462865 intergenic not near genes chr2L_4_2460001 chr2L_2460001 RAL-861 31 chr2L 2661219 2661228 chr2L 2663043 2663055 I-element 4 1826 2.0 1.0 1.5 1.6 1836 chr2L 2661219 intergenic not near genes chr2L 2662137 intergenic not near genes chr2L 2663055 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-861 32 chr2L 2698868 2698895 chr2L 2698955 2698980 6 84 2.0 1.5 1.8 2.1 112 chr2L 2698868 intron CG31690 + chr2L 2698924 intron CG31690 + chr2L 2698980 intron CG31690 + chr2L_6_2695001 chr2L_2695001 RAL-861 33 chr2L 2804241 2804272 chr2L 2804326 2804361 13 86 2.5 2.0 2.2 4.1 120 chr2L 2804241 intergenic not near genes chr2L 2804301 intergenic not near genes chr2L 2804361 intergenic not near genes chr2L_13_2800001 chr2L_2800001 RAL-861 34 chr2L 2895699 2895718 chr2L 2895772 2895801 7 82 0.5 2.0 1.2 3.2 102 chr2L 2895699 intron lilli + chr2L 2895750 intron lilli + chr2L 2895801 intron lilli + chr2L_7_2895001 chr2L_2895001 RAL-861 35 chr2L 2937435 2937445 chr2L 2937512 2937514 4 75 1.5 5.5 3.5 0.9 79 chr2L 2937435 intron lilli + chr2L 2937474 intron lilli + chr2L 2937514 intron lilli + chr2L_4_2935001 chr2L_2935001 RAL-861 36 chr2L 3008906 3008939 chr2L 3009015 3009047 8 106 1.5 1.5 1.5 3.2 141 chr2L 3008906 intron CG17265 + chr2L 3008976 intron CG17265 + chr2L 3009047 intron CG17265 + chr2L_8_3005001 chr2L_3005001 RAL-861 37 chr2L 3073032 3073061 chr2L 3078233 3078242 copia 8 5199 0.0 4.0 2.0 2.7 5210 chr2L 3073032 intron toc - chr2L 3075637 intron toc - chr2L 3078242 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-861 38 chr2L 3108882 3108895 chr2L 3108944 3108972 6 69 1.0 2.5 1.8 2.1 90 chr2L 3108882 intron toc - chr2L 3108927 intron toc - chr2L 3108972 intron toc - chr2L_6_3105001 chr2L_3105001 RAL-861 39 chr2L 3291247 3291266 chr2L 3291326 3291328 5 75 2.0 6.0 4.0 1.0 81 chr2L 3291247 3` UTR CG9664 - chr2L 3291288 3` UTR CG9664 - chr2L 3291328 3` UTR CG9664 - chr2L_5_3290001 chr2L_3290001 RAL-861 40 chr2L 3603625 3603653 chr2L 3603721 3603749 9 94 2.0 0.5 1.2 4.1 124 chr2L 3603625 intergenic not near genes chr2L 3603687 intergenic not near genes chr2L 3603749 intergenic odd - chr2L_9_3600001 chr2L_3600001 RAL-861 41 chr2L 3634104 3634130 chr2L 3634186 3634188 9 77 2.5 2.5 2.5 2.6 84 chr2L 3634104 intron for - chr2L 3634146 intron for - chr2L 3634188 intron for - chr2L_9_3630001 chr2L_3630001 RAL-861 42 chr2L 3649786 3649794 chr2L 3654988 3654994 copia 5 5202 0.5 2.0 1.2 2.3 5208 chr2L 3649786 intron for - chr2L 3652390 intron for - chr2L 3654994 intron for - chr2L_5_3650001 chr2L_3650001 RAL-861 43 chr2L 3673291 3673313 chr2L 3673391 3673411 4 97 0.0 0.5 0.2 3.3 120 chr2L 3673291 exon CG34340 + chr2L 3673351 intron CG34340 + chr2L 3673411 intron CG34340 + chr2L_4_3670001 chr2L_3670001 RAL-861 44 chr2L 3891896 3891926 chr2L 3891977 3892011 4 82 2.0 4.0 3.0 1.0 115 chr2L 3891896 intron capu - chr2L 3891954 intron capu - chr2L 3892011 intron capu - chr2L_4_3890001 chr2L_3890001 RAL-861 45 chr2L 4062274 4062294 chr2L 4062351 4062371 8 77 3.5 3.0 3.2 1.9 97 chr2L 4062274 intron ed + chr2L 4062322 intron ed + chr2L 4062371 intron ed + chr2L_8_4060001 chr2L_4060001 RAL-861 46 chr2L 4120568 4120580 chr2L 4120737 4120749 7 168 2.5 7.5 5.0 1.2 181 chr2L 4120568 exon Sr-CIII + chr2L 4120658 exon Sr-CIII + chr2L 4120749 exon Sr-CIII + chr2L_7_4120001 chr2L_4120001 RAL-861 47 chr2L 4138129 4138153 chr2L 4138209 4138223 6 75 3.0 3.0 3.0 1.5 94 chr2L 4138129 intergenic not near genes chr2L 4138176 intergenic not near genes chr2L 4138223 intergenic not near genes chr2L_6_4135001 chr2L_4135001 RAL-861 48 chr2L 4150626 4150652 chr2L 4150706 4150727 4 76 2.5 2.0 2.2 1.2 101 chr2L 4150626 exon CG2955 + chr2L 4150676 exon CG2955 + chr2L 4150727 exon CG2955 + chr2L_4_4150001 chr2L_4150001 RAL-861 49 chr2L 4262077 4262103 chr2L 4262153 4262154 12 74 3.0 6.0 4.5 2.2 77 chr2L 4262077 intergenic not near genes chr2L 4262116 intergenic not near genes chr2L 4262154 intergenic not near genes chr2L_12_4260001 chr2L_4260001 RAL-861 50 chr2L 4270716 4270745 chr2L 4270906 4270936 5 186 2.0 1.0 1.5 2.0 220 chr2L 4270716 intergenic not near genes chr2L 4270826 intergenic not near genes chr2L 4270936 intergenic not near genes chr2L_5_4270001 chr2L_4270001 RAL-861 51 chr2L 4275084 4275093 chr2L 4275166 4275176 4 83 1.0 3.0 2.0 1.3 92 chr2L 4275084 intergenic not near genes chr2L 4275130 intergenic not near genes chr2L 4275176 intergenic not near genes chr2L_4_4275001 chr2L_4275001 RAL-861 52 chr2L 4351472 4351497 chr2L 4351548 4351573 10 75 5.0 1.0 3.0 2.5 101 chr2L 4351472 intergenic CR44700 + chr2L 4351522 intergenic CR44700 + chr2L 4351573 intergenic CR44700 + chr2L_10_4350001 chr2L_4350001 RAL-861 53 chr2L 4356635 4356658 chr2L 4356714 4356729 4 76 2.5 3.0 2.8 1.1 94 chr2L 4356635 intergenic not near genes chr2L 4356682 intergenic not near genes chr2L 4356729 intergenic not near genes chr2L_4_4355001 chr2L_4355001 RAL-861 54 chr2L 4601730 4601735 chr2L 4609144 4609176 mdg1 4 7430 1.5 4.5 3.0 1.0 7446 chr2L 4601730 intron dp - chr2L 4605453 intron dp - chr2L 4609176 intron dp - chr2L_4_4605001 chr2L_4605001 RAL-861 55 chr2L 4803891 4803901 chr2L 4803975 4803985 5 83 2.5 4.0 3.2 1.2 94 chr2L 4803891 intergenic not near genes chr2L 4803938 intergenic not near genes chr2L 4803985 intergenic not near genes chr2L_5_4800001 chr2L_4800001 RAL-861 56 chr2L 4803902 4803913 chr2L 4803967 4803972 4 68 2.5 3.0 2.8 1.1 70 chr2L 4803902 intergenic not near genes chr2L 4803937 intergenic not near genes chr2L 4803972 intergenic not near genes chr2L_4_4800001 chr2L_4800001 RAL-861 57 chr2L 4819496 4819514 chr2L 4819615 4819636 6 120 1.0 2.0 1.5 2.4 140 chr2L 4819496 intergenic not near genes chr2L 4819566 intergenic not near genes chr2L 4819636 intergenic not near genes chr2L_6_4815001 chr2L_4815001 RAL-861 58 chr2L 5120978 5121006 chr2L 5121067 5121099 8 91 3.0 5.5 4.2 1.5 121 chr2L 5120978 intron Msp300 + chr2L 5121038 intron Msp300 + chr2L 5121099 intron Msp300 + chr2L_8_5120001 chr2L_5120001 RAL-861 59 chr2L 5238920 5238945 chr2L 5239005 5239030 5 85 3.0 0.5 1.8 1.8 110 chr2L 5238920 intron tkv - chr2L 5238975 intron tkv - chr2L 5239030 intron tkv - chr2L_5_5235001 chr2L_5235001 RAL-861 60 chr2L 5298254 5298278 chr2L 5298347 5298371 6 92 1.0 0.5 0.8 3.3 117 chr2L 5298254 intron vri + chr2L 5298312 intron vri + chr2L 5298371 intron vri + chr2L_6_5295001 chr2L_5295001 RAL-861 61 chr2L 5475154 5475164 chr2L 5475259 5475266 6 104 1.5 4.5 3.0 1.5 112 chr2L 5475154 intergenic not near genes chr2L 5475210 intergenic not near genes chr2L 5475266 intergenic not near genes chr2L_6_5475001 chr2L_5475001 RAL-861 62 chr2L 5500057 5500075 chr2L 5500143 5500161 8 86 2.5 1.5 2.0 2.7 104 chr2L 5500057 intergenic not near genes chr2L 5500109 intergenic not near genes chr2L 5500161 intergenic not near genes chr2L_8_5500001 chr2L_5500001 RAL-861 63 chr2L 5582195 5582228 chr2L 5582270 5582288 6 73 1.0 2.0 1.5 2.4 93 chr2L 5582195 intergenic not near genes chr2L 5582242 intergenic not near genes chr2L 5582288 intergenic not near genes chr2L_6_5580001 chr2L_5580001 RAL-861 64 chr2L 5780906 5780935 chr2L 5781011 5781030 9 103 3.5 1.0 2.2 2.8 124 chr2L 5780906 intron CG9171 - chr2L 5780968 intron CG9171 - chr2L 5781030 intron CG9171 - chr2L_9_5780001 chr2L_5780001 RAL-861 65 chr2L 5827723 5827729 chr2L 5836718 5836728 roo 5 9000 7.5 3.5 5.5 0.8 9005 chr2L 5827723 intron TrissinR + chr2L 5832226 intron TrissinR + chr2L 5836728 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-861 66 chr2L 5942030 5942055 chr2L 5942122 5942147 5 92 1.5 3.5 2.5 1.4 117 chr2L 5942030 5` UTR CR45289 + chr2L 5942088 5` UTR CR45289 + chr2L 5942147 5` UTR CR45289 + chr2L_5_5940001 chr2L_5940001 RAL-861 67 chr2L 5993337 5993359 chr2L 5993428 5993450 7 90 1.0 3.5 2.2 2.2 113 chr2L 5993337 exon lid - chr2L 5993394 intron lid - chr2L 5993450 intron lid - chr2L_7_5990001 chr2L_5990001 RAL-861 68 chr2L 6050440 6050466 chr2L 6050544 6050570 5 104 1.0 0.0 0.5 3.3 130 chr2L 6050440 intergenic CG12393 +,CG9135 + chr2L 6050505 intergenic CG12393 +,CG9135 + chr2L 6050570 intergenic CG12393 +,CG9135 + chr2L_5_6050001 chr2L_6050001 RAL-861 69 chr2L 6054892 6054926 chr2L 6055138 6055173 9 244 4.5 2.0 3.2 2.1 281 chr2L 6054892 intron CG13995 + chr2L 6055032 intron CG13995 + chr2L 6055173 intron CG13995 + chr2L_9_6055001 chr2L_6055001 RAL-861 70 chr2L 6308317 6308344 chr2L 6308400 6308427 5 83 2.0 2.0 2.0 1.7 110 chr2L 6308317 intron Ddr + chr2L 6308372 intron Ddr + chr2L 6308427 intron,3` UTR Ddr +,CG43922 - chr2L_5_6305001 chr2L_6305001 RAL-861 71 chr2L 6426861 6426883 chr2L 6445121 6445143 roo 9 18259 3.5 2.0 2.8 2.4 18282 chr2L 6426861 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445143 exon CG9527 - chr2L_9_6435001 chr2L_6435001 RAL-861 72 chr2L 6544374 6544393 chr2L 6544462 6544485 7 87 3.0 1.5 2.2 2.2 111 chr2L 6544374 intron eya - chr2L 6544430 intron eya - chr2L 6544485 intron eya - chr2L_7_6540001 chr2L_6540001 RAL-861 73 chr2L 6579880 6579903 chr2L 6579965 6579988 5 84 1.5 1.5 1.5 2.0 108 chr2L 6579880 intron CG11319 - chr2L 6579934 intron CG11319 - chr2L 6579988 intron CG11319 - chr2L_5_6575001 chr2L_6575001 RAL-861 74 chr2L 6771984 6772022 chr2L 6772071 6772085 8 79 0.5 1.0 0.8 4.4 101 chr2L 6771984 intron CG11321 - chr2L 6772034 intron CG11321 - chr2L 6772085 intron CG11321 - chr2L_8_6770001 chr2L_6770001 RAL-861 75 chr2L 6799543 6799564 chr2L 6799631 6799649 5 84 1.0 1.0 1.0 2.5 106 chr2L 6799543 5` UTR CR43610 + chr2L 6799596 5` UTR CR43610 + chr2L 6799649 intergenic CR43610 +,CG17376 - chr2L_5_6795001 chr2L_6795001 RAL-861 76 chr2L 7217245 7217252 chr2L 7217350 7217357 4 105 5.5 4.0 4.8 0.7 112 chr2L 7217245 intron CG13784 - chr2L 7217301 intron CG13784 - chr2L 7217357 intron CG13784 - chr2L_4_7215001 chr2L_7215001 RAL-861 77 chr2L 7217262 7217268 chr2L 7217349 7217373 6 98 2.5 4.0 3.2 1.4 111 chr2L 7217262 intron CG13784 - chr2L 7217318 intron CG13784 - chr2L 7217373 intron CG13784 - chr2L_6_7215001 chr2L_7215001 RAL-861 78 chr2L 7301298 7301326 chr2L 7301381 7301409 4 83 1.0 2.5 1.8 1.4 111 chr2L 7301298 intergenic not near genes chr2L 7301354 intergenic not near genes chr2L 7301409 intergenic not near genes chr2L_4_7300001 chr2L_7300001 RAL-861 79 chr2L 7325933 7325949 chr2L 7326014 7326023 4 78 3.0 1.0 2.0 1.3 90 chr2L 7325933 intergenic not near genes chr2L 7325978 intergenic not near genes chr2L 7326023 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-861 80 chr2L 7343327 7343335 chr2L 7350443 7350450 roo 4 7116 6.5 1.5 4.0 0.8 7123 chr2L 7343327 intron Wnt6 + chr2L 7346888 intron Wnt6 + chr2L 7350450 intron Wnt6 + chr2L_4_7345001 chr2L_7345001 RAL-861 81 chr2L 7343341 7343358 chr2L 7350441 7350471 roo 5 7110 3.0 1.5 2.2 1.6 7130 chr2L 7343341 intron Wnt6 + chr2L 7346906 intron Wnt6 + chr2L 7350471 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-861 82 chr2L 7351054 7351078 chr2L 7351156 7351181 4 102 2.0 3.0 2.5 1.1 127 chr2L 7351054 intron Wnt6 + chr2L 7351118 intron Wnt6 + chr2L 7351181 intron Wnt6 + chr2L_4_7350001 chr2L_7350001 RAL-861 83 chr2L 7436203 7436218 chr2L 7436291 7436306 4 86 1.0 2.5 1.8 1.4 103 chr2L 7436203 intergenic not near genes chr2L 7436254 intergenic not near genes chr2L 7436306 intergenic not near genes chr2L_4_7435001 chr2L_7435001 RAL-861 84 chr2L 7516339 7516359 chr2L 7516447 7516458 7 112 2.0 1.5 1.8 2.5 119 chr2L 7516339 intron RapGAP1 - chr2L 7516398 intron RapGAP1 - chr2L 7516458 intron RapGAP1 - chr2L_7_7515001 chr2L_7515001 RAL-861 85 chr2L 7555745 7555761 chr2L 7555828 7555844 4 83 2.0 4.0 3.0 1.0 99 chr2L 7555745 intron RapGAP1 - chr2L 7555794 intron RapGAP1 - chr2L 7555844 intron RapGAP1 - chr2L_4_7555001 chr2L_7555001 RAL-861 86 chr2L 7567510 7567538 chr2L 7567603 7567610 4 85 1.0 1.5 1.2 1.8 100 chr2L 7567510 intron RapGAP1 - chr2L 7567560 intron RapGAP1 - chr2L 7567610 intron RapGAP1 - chr2L_4_7565001 chr2L_7565001 RAL-861 87 chr2L 7867566 7867596 chr2L 7867660 7867688 4 94 4.0 1.5 2.8 1.1 122 chr2L 7867566 intron Proc - chr2L 7867627 intron Proc - chr2L 7867688 intron Proc - chr2L_4_7865001 chr2L_7865001 RAL-861 88 chr2L 7959040 7959071 chr2L 7960451 7960482 pogo 11 1409 3.5 3.5 3.5 2.4 1442 chr2L 7959040 intron Snoo - chr2L 7959761 intron Snoo - chr2L 7960482 intron Snoo - chr2L_11_7955001 chr2L_7955001 RAL-861 89 chr2L 7977092 7977112 chr2L 7984066 7984083 297 6 6972 1.0 3.0 2.0 2.0 6991 chr2L 7977092 intron Snoo - chr2L 7980588 intron Snoo - chr2L 7984083 intron,5` UTR Snoo -,CG7231 + chr2L_6_7980001 chr2L_7980001 RAL-861 90 chr2L 8013613 8013635 chr2L 8018818 8018838 copia 4 5203 2.5 0.0 1.2 1.8 5225 chr2L 8013613 intron Tg + chr2L 8016226 intron Tg + chr2L 8018838 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-861 91 chr2L 8184918 8184955 chr2L 8185009 8185046 7 87 2.0 2.5 2.2 2.2 128 chr2L 8184918 intron Piezo + chr2L 8184982 intron Piezo + chr2L 8185046 intron Piezo + chr2L_7_8180001 chr2L_8180001 RAL-861 92 chr2L 8452418 8452449 chr2L 8461589 8461609 roo 10 9168 4.0 2.0 3.0 2.5 9191 chr2L 8452418 intron fu12 - chr2L 8457014 intron fu12 - chr2L 8461609 intron fu12 - chr2L_10_8455001 chr2L_8455001 RAL-861 93 chr2L 8502659 8502690 chr2L 8502743 8502771 7 78 3.5 2.0 2.8 1.8 112 chr2L 8502659 intron Dh31 - chr2L 8502715 intron Dh31 - chr2L 8502771 intron Dh31 - chr2L_7_8500001 chr2L_8500001 RAL-861 94 chr2L 8575905 8575926 chr2L 8576286 8576312 12 383 2.5 1.5 2.0 4.0 407 chr2L 8575905 intron Sema-1a + chr2L 8576108 intron Sema-1a + chr2L 8576312 intron Sema-1a + chr2L_12_8575001 chr2L_8575001 RAL-861 95 chr2L 8604976 8604998 chr2L 8605074 8605096 6 97 1.5 3.5 2.5 1.7 120 chr2L 8604976 intron Sema-1a + chr2L 8605036 intron Sema-1a + chr2L 8605096 intron Sema-1a + chr2L_6_8605001 chr2L_8605001 RAL-861 96 chr2L 8723125 8723146 chr2L 8731500 8731523 Tirant 5 8377 3.0 3.5 3.2 1.2 8398 chr2L 8723125 intron raw - chr2L 8727324 intron raw - chr2L 8731523 intron raw - chr2L_5_8725001 chr2L_8725001 RAL-861 97 chr2L 8934095 8934109 chr2L 8934168 8934187 4 75 3.0 6.0 4.5 0.7 92 chr2L 8934095 5` UTR Tsp29Fa + chr2L 8934141 5` UTR Tsp29Fa + chr2L 8934187 5` UTR Tsp29Fa + chr2L_4_8930001 chr2L_8930001 RAL-861 98 chr2L 8997263 8997294 chr2L 8997626 8997658 5 365 10.0 21.0 15.5 0.3 395 chr2L 8997263 5` UTR alien - chr2L 8997460 intergenic alien -,CG18661 + chr2L 8997658 5` UTR CG18661 + chr2L_5_8995001 chr2L_8995001 RAL-861 99 chr2L 9000290 9000309 chr2L 9007800 9007819 roo 7 7510 6.0 2.5 4.2 1.3 7529 chr2L 9000290 intergenic Try29F + chr2L 9004054 intergenic not near genes chr2L 9007819 intergenic not near genes chr2L_7_9000001 chr2L_9000001 RAL-861 100 chr2L 9084337 9084340 chr2L 16217660 16217660 5 7133322 12.5 18.0 15.2 0.3 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12650001 chr2L_12650001 RAL-861 101 chr2L 9192734 9192748 chr2L 9192851 9192865 4 116 2.0 1.0 1.5 1.6 131 chr2L 9192734 intron tai + chr2L 9192800 intron tai + chr2L 9192865 intron tai + chr2L_4_9190001 chr2L_9190001 RAL-861 102 chr2L 9217971 9217996 chr2L 9222755 9222783 Doc 9 4782 3.5 2.0 2.8 2.4 4812 chr2L 9217971 intron tai + chr2L 9220377 intron tai + chr2L 9222783 intron tai + chr2L_9_9220001 chr2L_9220001 RAL-861 103 chr2L 9264343 9264381 chr2L 9264443 9264481 9 97 3.0 0.0 1.5 3.6 138 chr2L 9264343 intron Ggamma30A + chr2L 9264412 intron Ggamma30A + chr2L 9264481 intron Ggamma30A + chr2L_9_9260001 chr2L_9260001 RAL-861 104 chr2L 9297377 9297401 chr2L 9297454 9297478 5 77 3.5 2.0 2.8 1.3 101 chr2L 9297377 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297478 3` UTR Ggamma30A + chr2L_5_9295001 chr2L_9295001 RAL-861 105 chr2L 9355528 9355548 chr2L 9356180 9356190 4 652 1.5 1.0 1.2 1.8 662 chr2L 9355528 intergenic not near genes chr2L 9355859 intergenic not near genes chr2L 9356190 intergenic not near genes chr2L_4_9355001 chr2L_9355001 RAL-861 106 chr2L 9393500 9393528 chr2L 9396467 9396495 jockey 6 2963 3.5 5.5 4.5 1.1 2995 chr2L 9393500 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396495 intron Shawl - chr2L_6_9390001 chr2L_9390001 RAL-861 107 chr2L 9454978 9454999 chr2L 9455080 9455101 4 102 1.5 0.5 1.0 2.0 123 chr2L 9454978 intron numb + chr2L 9455040 intron numb + chr2L 9455101 intron numb + chr2L_4_9455001 chr2L_9455001 RAL-861 108 chr2L 9457073 9457103 chr2L 9457147 9457180 11 73 4.5 2.5 3.5 2.4 107 chr2L 9457073 intron numb + chr2L 9457126 intron numb + chr2L 9457180 intron numb + chr2L_11_9455001 chr2L_9455001 RAL-861 109 chr2L 9508753 9508767 chr2L 9508851 9508883 4 108 4.5 4.0 4.2 0.8 130 chr2L 9508753 intron CG33298 + chr2L 9508818 intron CG33298 + chr2L 9508883 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-861 110 chr2L 9855935 9855960 chr2L 9856233 9856239 4 290 3.5 2.0 2.8 1.1 304 chr2L 9855935 intron nAChRalpha6 - chr2L 9856087 intron nAChRalpha6 - chr2L 9856239 intron nAChRalpha6 - chr2L_4_9855001 chr2L_9855001 RAL-861 111 chr2L 9973733 9973756 chr2L 9980851 9980875 HMS-Beagle 6 7116 4.0 5.0 4.5 1.1 7142 chr2L 9973733 intergenic not near genes chr2L 9977304 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_6_9975001 chr2L_9975001 RAL-861 112 chr2L 9986351 9986373 chr2L 9986446 9986468 5 94 1.0 5.0 3.0 1.2 117 chr2L 9986351 intron bib + chr2L 9986410 intron bib + chr2L 9986468 intron bib + chr2L_5_9985001 chr2L_9985001 RAL-861 113 chr2L 10039113 10039135 chr2L 10039334 10039356 7 221 3.5 2.5 3.0 1.8 243 chr2L 10039113 intergenic obst-B + chr2L 10039234 intergenic obst-B + chr2L 10039356 intergenic obst-B + chr2L_7_10035001 chr2L_10035001 RAL-861 114 chr2L 10087476 10087485 chr2L 10087553 10087560 4 76 3.5 6.5 5.0 0.7 84 chr2L 10087476 intron CG44153 - chr2L 10087518 intron CG44153 - chr2L 10087560 intron CG44153 - chr2L_4_10085001 chr2L_10085001 RAL-861 115 chr2L 10105281 10105294 chr2L 10105357 10105370 4 73 4.0 2.0 3.0 1.0 89 chr2L 10105281 intron,intron CG44153 -,CG34109 + chr2L 10105326 intron,intron CG44153 -,CG34109 + chr2L 10105370 intron,intron CG44153 -,CG34109 + chr2L_4_10105001 chr2L_10105001 RAL-861 116 chr2L 10153203 10153237 chr2L 10153281 10153316 6 75 2.5 2.5 2.5 1.7 113 chr2L 10153203 intron,exon CG44153 -,CG4839 + chr2L 10153260 intron,intron CG44153 -,CG4839 + chr2L 10153316 intron,intron CG44153 -,CG4839 + chr2L_6_10150001 chr2L_10150001 RAL-861 117 chr2L 10155200 10155214 chr2L 10155286 10155300 4 86 5.0 0.5 2.8 1.1 100 chr2L 10155200 intron,exon CG44153 -,CG4839 + chr2L 10155250 intron,3` UTR CG44153 -,CG4839 + chr2L 10155300 intron,3` UTR CG44153 -,CG4839 + chr2L_4_10155001 chr2L_10155001 RAL-861 118 chr2L 10258919 10258945 chr2L 10259019 10259047 8 101 1.5 4.5 3.0 2.0 128 chr2L 10258919 intron Pten - chr2L 10258983 intron Pten - chr2L 10259047 exon Pten - chr2L_8_10255001 chr2L_10255001 RAL-861 119 chr2L 10579050 10579077 chr2L 10579139 10579167 4 90 1.0 1.5 1.2 1.8 117 chr2L 10579050 intron Trim9 + chr2L 10579108 intron Trim9 + chr2L 10579167 intron Trim9 + chr2L_4_10575001 chr2L_10575001 RAL-861 120 chr2L 10591215 10591245 chr2L 10591548 10591578 7 331 3.0 0.5 1.8 2.5 363 chr2L 10591215 intron Trim9 + chr2L 10591396 intron Trim9 + chr2L 10591578 intron Trim9 + chr2L_7_10590001 chr2L_10590001 RAL-861 121 chr2L 10640639 10640671 chr2L 10640728 10640739 11 85 4.5 2.5 3.5 2.4 100 chr2L 10640639 exon CG31872 + chr2L 10640689 exon CG31872 + chr2L 10640739 exon CG31872 + chr2L_11_10640001 chr2L_10640001 RAL-861 122 chr2L 10798768 10798793 chr2L 10798848 10798873 8 77 3.0 2.0 2.5 2.3 105 chr2L 10798768 intron CG31869 - chr2L 10798820 intron CG31869 - chr2L 10798873 intron CG31869 - chr2L_8_10795001 chr2L_10795001 RAL-861 123 chr2L 10875009 10875027 chr2L 10875083 10875109 6 80 1.5 2.0 1.8 2.1 100 chr2L 10875009 intergenic not near genes chr2L 10875059 intergenic not near genes chr2L 10875109 intergenic not near genes chr2L_6_10875001 chr2L_10875001 RAL-861 124 chr2L 10946941 10946975 chr2L 10956156 10956159 roo 6 9203 4.0 4.5 4.2 1.2 9218 chr2L 10946941 intron dpr2 - chr2L 10951550 intron dpr2 - chr2L 10956159 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-861 125 chr2L 11001873 11001902 chr2L 11010715 11010749 14 8846 17.0 28.5 22.8 0.6 8876 chr2L 11001873 intergenic lectin-33A +,aub - chr2L 11006311 exon Nup154 + chr2L 11010749 3` UTR,exon Nup154 +,Art8 - chr2L_14_11005001 chr2L_11005001 RAL-861 126 chr2L 11169022 11169029 chr2L 11169265 11169281 5 250 4.5 5.0 4.8 0.9 259 chr2L 11169022 intron Ca-beta - chr2L 11169152 intron Ca-beta - chr2L 11169281 intron Ca-beta - chr2L_5_11165001 chr2L_11165001 RAL-861 127 chr2L 11303072 11303085 chr2L 11303137 11303166 5 77 3.0 0.5 1.8 1.8 94 chr2L 11303072 intergenic not near genes chr2L 11303119 intergenic not near genes chr2L 11303166 intergenic not near genes chr2L_5_11300001 chr2L_11300001 RAL-861 128 chr2L 11413290 11413320 chr2L 11413414 11413444 4 121 3.5 0.5 2.0 1.3 154 chr2L 11413290 intergenic not near genes chr2L 11413367 intergenic not near genes chr2L 11413444 intergenic not near genes chr2L_4_11410001 chr2L_11410001 RAL-861 129 chr2L 11491132 11491158 chr2L 11491211 11491228 5 77 1.0 0.0 0.5 3.3 96 chr2L 11491132 intergenic not near genes chr2L 11491180 intergenic not near genes chr2L 11491228 intergenic not near genes chr2L_5_11490001 chr2L_11490001 RAL-861 130 chr2L 11612663 11612684 chr2L 11612750 11612772 9 87 4.0 4.5 4.2 1.7 109 chr2L 11612663 intron kek2 + chr2L 11612718 intron kek2 + chr2L 11612772 intron kek2 + chr2L_9_11610001 chr2L_11610001 RAL-861 131 chr2L 11614066 11614085 chr2L 11615547 11615580 hopper2 5 1483 2.5 1.5 2.0 1.7 1514 chr2L 11614066 intron kek2 + chr2L 11614823 intron kek2 + chr2L 11615580 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-861 132 chr2L 11657980 11658003 chr2L 11658065 11658088 5 80 2.0 5.0 3.5 1.1 108 chr2L 11657980 3` UTR CG43167 + chr2L 11658034 intergenic CG43167 + chr2L 11658088 intergenic CG43167 + chr2L_5_11655001 chr2L_11655001 RAL-861 133 chr2L 11713505 11713540 chr2L 11720973 11721007 blood 12 7464 4.0 2.0 3.0 3.0 7502 chr2L 11713505 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721007 intergenic CR44143 + chr2L_12_11715001 chr2L_11715001 RAL-861 134 chr2L 11770597 11770621 chr2L 11770684 11770708 11 87 2.5 0.0 1.2 5.0 111 chr2L 11770597 intergenic not near genes chr2L 11770652 intergenic not near genes chr2L 11770708 intergenic not near genes chr2L_11_11770001 chr2L_11770001 RAL-861 135 chr2L 11845081 11845092 chr2L 11845499 11845510 4 418 1.5 4.0 2.8 1.1 429 chr2L 11845081 intron Pde1c - chr2L 11845296 intron Pde1c - chr2L 11845510 intron Pde1c - chr2L_4_11845001 chr2L_11845001 RAL-861 136 chr2L 11910955 11910984 chr2L 11911033 11911061 10 77 3.0 2.0 2.5 2.9 106 chr2L 11910955 intron Pde1c - chr2L 11911008 intron Pde1c - chr2L 11911061 intron Pde1c - chr2L_10_11910001 chr2L_11910001 RAL-861 137 chr2L 11941722 11941742 chr2L 11941838 11941857 6 114 1.5 0.5 1.0 3.0 135 chr2L 11941722 intergenic not near genes chr2L 11941790 intergenic not near genes chr2L 11941857 intergenic not near genes chr2L_6_11940001 chr2L_11940001 RAL-861 138 chr2L 12087133 12087165 chr2L 12087482 12087508 14 344 4.0 3.0 3.5 3.1 375 chr2L 12087133 5` UTR CR44593 + chr2L 12087320 5` UTR CR44593 + chr2L 12087508 5` UTR CR44593 + chr2L_14_12085001 chr2L_12085001 RAL-861 139 chr2L 12153934 12153954 chr2L 12154010 12154031 5 74 4.5 0.5 2.5 1.4 97 chr2L 12153934 exon CG31760 + chr2L 12153982 intron CG31760 + chr2L 12154031 intron CG31760 + chr2L_5_12150001 chr2L_12150001 RAL-861 140 chr2L 12305423 12305438 chr2L 12305511 12305525 4 88 3.0 6.0 4.5 0.7 102 chr2L 12305423 intron aret + chr2L 12305474 intron aret + chr2L 12305525 intron aret + chr2L_4_12305001 chr2L_12305001 RAL-861 141 chr2L 12387918 12387950 chr2L 12388021 12388043 6 97 3.5 2.5 3.0 1.5 125 chr2L 12387918 intron bru-2 + chr2L 12387980 intron bru-2 + chr2L 12388043 intron bru-2 + chr2L_6_12385001 chr2L_12385001 RAL-861 142 chr2L 12487884 12487920 chr2L 12487965 12488001 8 80 0.5 2.0 1.2 3.6 117 chr2L 12487884 intron bun - chr2L 12487942 intron bun - chr2L 12488001 intron bun - chr2L_8_12485001 chr2L_12485001 RAL-861 143 chr2L 12506015 12506030 chr2L 12506091 12506106 4 76 0.5 2.5 1.5 1.6 91 chr2L 12506015 intron bun - chr2L 12506060 intron bun - chr2L 12506106 intron bun - chr2L_4_12505001 chr2L_12505001 RAL-861 144 chr2L 12529236 12529266 chr2L 12529388 12529418 4 152 1.0 1.5 1.2 1.8 182 chr2L 12529236 intron bun - chr2L 12529327 intron bun - chr2L 12529418 intron bun - chr2L_4_12525001 chr2L_12525001 RAL-861 145 chr2L 12558321 12558338 chr2L 12565449 12565463 HMS-Beagle 4 7127 1.5 1.0 1.2 1.8 7142 chr2L 12558321 intergenic not near genes chr2L 12561892 intergenic not near genes chr2L 12565463 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-861 146 chr2L 12739172 12739191 chr2L 12743952 12743972 Doc 8 4778 3.5 4.0 3.8 1.7 4800 chr2L 12739172 exon MRP + chr2L 12741572 intron MRP + chr2L 12743972 intron MRP + chr2L_8_12740001 chr2L_12740001 RAL-861 147 chr2L 12751324 12751340 chr2L 12751406 12751412 6 81 2.0 6.0 4.0 1.2 88 chr2L 12751324 intergenic not near genes chr2L 12751368 intergenic not near genes chr2L 12751412 intergenic not near genes chr2L_6_12750001 chr2L_12750001 RAL-861 148 chr2L 12791602 12791639 chr2L 12795277 12795280 F-element 9 3665 1.0 3.5 2.2 2.8 3678 chr2L 12791602 intergenic not near genes chr2L 12793441 intergenic not near genes chr2L 12795280 intergenic not near genes chr2L_9_12790001 chr2L_12790001 RAL-861 149 chr2L 12861703 12861730 chr2L 12863169 12863171 hobo 9 1463 1.0 5.5 3.2 2.1 1468 chr2L 12861703 intergenic not near genes chr2L 12862437 intergenic not near genes chr2L 12863171 intergenic not near genes chr2L_9_12860001 chr2L_12860001 RAL-861 150 chr2L 12933850 12933880 chr2L 12941317 12941347 blood 7 7461 2.5 4.5 3.5 1.6 7497 chr2L 12933850 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941347 intergenic not near genes chr2L_7_12935001 chr2L_12935001 RAL-861 151 chr2L 12965193 12965216 chr2L 12965273 12965296 8 78 1.5 6.5 4.0 1.6 103 chr2L 12965193 intergenic not near genes chr2L 12965244 intergenic not near genes chr2L 12965296 intergenic not near genes chr2L_8_12965001 chr2L_12965001 RAL-861 152 chr2L 13035427 13035445 chr2L 13035602 13035634 8 183 2.0 1.0 1.5 3.2 207 chr2L 13035427 intron CG9932 - chr2L 13035530 intron CG9932 - chr2L 13035634 intron CG9932 - chr2L_8_13035001 chr2L_13035001 RAL-861 153 chr2L 13204319 13204335 chr2L 13204417 13204424 4 95 4.5 5.0 4.8 0.7 105 chr2L 13204319 intron Pect + chr2L 13204372 intron Pect + chr2L 13204424 intron Pect + chr2L_4_13200001 chr2L_13200001 RAL-861 154 chr2L 13266396 13266412 chr2L 13266471 13266500 7 78 3.0 5.0 4.0 1.4 104 chr2L 13266396 intron CG44085 + chr2L 13266448 intron CG44085 + chr2L 13266500 intron CG44085 + chr2L_7_13265001 chr2L_13265001 RAL-861 155 chr2L 13351821 13351843 chr2L 13351906 13351929 6 86 2.0 3.0 2.5 1.7 108 chr2L 13351821 exon CG9395 - chr2L 13351875 intron CG9395 - chr2L 13351929 exon CG9395 - chr2L_6_13350001 chr2L_13350001 RAL-861 156 chr2L 13425036 13425062 chr2L 13425124 13425150 6 87 7.5 0.5 4.0 1.2 114 chr2L 13425036 intron CG42784 + chr2L 13425093 intron CG42784 + chr2L 13425150 intron CG42784 + chr2L_6_13425001 chr2L_13425001 RAL-861 157 chr2L 13481462 13481481 chr2L 13482069 13482069 jockey 4 602 2.5 7.5 5.0 0.7 607 chr2L 13481462 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482069 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-861 158 chr2L 13622137 13622168 chr2L 13622235 13622249 8 89 2.5 1.5 2.0 2.7 112 chr2L 13622137 intron kuz + chr2L 13622193 intron kuz + chr2L 13622249 intron kuz + chr2L_8_13620001 chr2L_13620001 RAL-861 159 chr2L 13622169 13622171 chr2L 13622234 13622251 4 75 2.5 1.5 2.0 1.3 82 chr2L 13622169 intron kuz + chr2L 13622210 intron kuz + chr2L 13622251 intron kuz + chr2L_4_13620001 chr2L_13620001 RAL-861 160 chr2L 13692156 13692182 chr2L 13692232 13692258 5 76 1.5 1.5 1.5 2.0 102 chr2L 13692156 intron CG31814 - chr2L 13692207 intron CG31814 - chr2L 13692258 intron CG31814 - chr2L_5_13690001 chr2L_13690001 RAL-861 161 chr2L 14017766 14017796 chr2L 14017858 14017888 5 92 1.5 3.0 2.2 1.6 122 chr2L 14017766 intron bgm + chr2L 14017827 intron bgm + chr2L 14017888 intron bgm + chr2L_5_14015001 chr2L_14015001 RAL-861 162 chr2L 14369129 14369160 chr2L 14369245 14369276 4 115 0.5 3.0 1.8 1.4 147 chr2L 14369129 intergenic not near genes chr2L 14369202 intergenic not near genes chr2L 14369276 intergenic not near genes chr2L_4_14365001 chr2L_14365001 RAL-861 163 chr2L 14564197 14564230 chr2L 14564271 14564279 12 68 3.5 0.5 2.0 4.0 82 chr2L 14564197 intergenic CG3473 - chr2L 14564238 intergenic not near genes chr2L 14564279 intergenic not near genes chr2L_12_14560001 chr2L_14560001 RAL-861 164 chr2L 14588381 14588417 chr2L 14588535 14588564 7 153 3.5 3.5 3.5 1.6 183 chr2L 14588381 intergenic CG42680 - chr2L 14588472 intergenic CG42680 - chr2L 14588564 intergenic CG42680 - chr2L_7_14585001 chr2L_14585001 RAL-861 165 chr2L 14707209 14707240 chr2L 14707328 14707356 8 118 4.0 6.5 5.2 1.3 147 chr2L 14707209 intergenic not near genes chr2L 14707282 intergenic not near genes chr2L 14707356 intergenic not near genes chr2L_8_14705001 chr2L_14705001 RAL-861 166 chr2L 14707584 14707620 chr2L 14708589 14708622 6 1001 0.5 10.0 5.2 1.0 1038 chr2L 14707584 intergenic not near genes chr2L 14708103 intergenic not near genes chr2L 14708622 intergenic not near genes chr2L_6_14705001 chr2L_14705001 RAL-861 167 chr2L 14706735 14706737 chr2L 14708997 14709026 6 2269 13.0 16.0 14.5 0.4 2291 chr2L 14706735 intergenic not near genes chr2L 14707880 intergenic not near genes chr2L 14709026 intergenic not near genes chr2L_6_14705001 chr2L_14705001 RAL-861 168 chr2L 14787102 14787115 chr2L 14787246 14787261 4 146 1.0 1.5 1.2 1.8 159 chr2L 14787102 intergenic not near genes chr2L 14787182 intergenic not near genes chr2L 14787261 intergenic not near genes chr2L_4_14785001 chr2L_14785001 RAL-861 169 chr2L 14803879 14803910 chr2L 14809082 14809113 copia 7 5201 1.5 2.5 2.0 2.3 5234 chr2L 14803879 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809113 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-861 170 chr2L 14838570 14838603 chr2L 14838649 14838682 9 78 2.5 4.5 3.5 2.0 112 chr2L 14838570 intergenic not near genes chr2L 14838626 intergenic not near genes chr2L 14838682 intergenic not near genes chr2L_9_14835001 chr2L_14835001 RAL-861 171 chr2L 14889955 14889984 chr2L 14890380 14890409 jockey 9 423 3.0 1.5 2.2 2.8 454 chr2L 14889955 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890409 intergenic not near genes chr2L_9_14890001 chr2L_14890001 RAL-861 172 chr2L 15026020 15026052 chr2L 15026101 15026133 9 79 4.5 4.5 4.5 1.6 113 chr2L 15026020 exon GABA-B-R1 + chr2L 15026076 intron GABA-B-R1 + chr2L 15026133 intron GABA-B-R1 + chr2L_9_15025001 chr2L_15025001 RAL-861 173 chr2L 15031556 15031582 chr2L 15031793 15031819 7 234 3.0 1.5 2.2 2.2 263 chr2L 15031556 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031688 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031819 intron GABA-B-R1 + chr2L_7_15030001 chr2L_15030001 RAL-861 174 chr2L 15044707 15044738 chr2L 15044783 15044798 8 71 1.0 0.0 0.5 5.3 91 chr2L 15044707 intergenic ck - chr2L 15044752 intergenic ck - chr2L 15044798 intergenic ck - chr2L_8_15040001 chr2L_15040001 RAL-861 175 chr2L 15078071 15078102 chr2L 15078156 15078190 4 87 0.5 0.5 0.5 2.7 119 chr2L 15078071 intron CG15270 + chr2L 15078130 intron CG15270 + chr2L 15078190 intron CG15270 + chr2L_4_15075001 chr2L_15075001 RAL-861 176 chr2L 15175270 15175287 chr2L 15175380 15175396 5 109 0.5 5.0 2.8 1.3 126 chr2L 15175270 intron CG4168 - chr2L 15175333 intron CG4168 - chr2L 15175396 intron CG4168 - chr2L_5_15175001 chr2L_15175001 RAL-861 177 chr2L 15510934 15510961 chr2L 15511028 15511055 4 92 1.5 3.5 2.5 1.1 121 chr2L 15510934 intergenic not near genes chr2L 15510994 intergenic not near genes chr2L 15511055 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-861 178 chr2L 15913642 15913656 chr2L 15913715 15913736 6 80 2.5 4.0 3.2 1.4 94 chr2L 15913642 intron beat-Ib - chr2L 15913689 intron beat-Ib - chr2L 15913736 intron beat-Ib - chr2L_6_15910001 chr2L_15910001 RAL-861 179 chr2L 15913657 15913666 chr2L 15913711 15913734 4 64 1.5 3.5 2.5 1.1 77 chr2L 15913657 intron beat-Ib - chr2L 15913696 intron beat-Ib - chr2L 15913734 intron beat-Ib - chr2L_4_15910001 chr2L_15910001 RAL-861 180 chr2L 15947758 15947771 chr2L 15948373 15948393 4 621 1.5 2.0 1.8 1.4 635 chr2L 15947758 intron beat-Ib - chr2L 15948076 intron beat-Ib - chr2L 15948393 intron beat-Ib - chr2L_4_15945001 chr2L_15945001 RAL-861 181 chr2L 15956025 15956046 chr2L 15957492 15957499 hobo 4 1463 3.5 1.5 2.5 1.1 1474 chr2L 15956025 intron beat-Ib - chr2L 15956762 intron beat-Ib - chr2L 15957499 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-861 182 chr2L 15960854 15960861 chr2L 15961152 15961162 4 305 4.5 1.5 3.0 1.0 308 chr2L 15960854 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961008 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961162 intron,5` UTR beat-Ib -,CR43803 + chr2L_4_15960001 chr2L_15960001 RAL-861 183 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 16.5 18.0 17.2 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-861 184 chr2L 16098938 16098949 chr2L 16099026 16099037 4 88 2.5 2.0 2.2 1.2 99 chr2L 16098938 intergenic not near genes chr2L 16098988 intergenic not near genes chr2L 16099037 intergenic not near genes chr2L_4_16095001 chr2L_16095001 RAL-861 185 chr2L 16150824 16150842 chr2L 16150888 16150920 6 76 3.0 3.5 3.2 1.4 96 chr2L 16150824 intergenic not near genes chr2L 16150872 intergenic not near genes chr2L 16150920 intergenic not near genes chr2L_6_16150001 chr2L_16150001 RAL-861 186 chr2L 9084336 9084340 chr2L 16217660 16217660 9 7133322 12.5 18.0 15.2 0.6 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_9_12650001 chr2L_12650001 RAL-861 187 chr2L 16243222 16243372 chr2L 16243299 16243445 7 75 1.5 1.0 1.2 3.2 223 chr2L 16243222 exon CG42818 + chr2L 16243334 exon CG42818 + chr2L 16243445 exon CG42818 + chr2L_7_16240001 chr2L_16240001 RAL-861 188 chr2L 16264007 16264013 chr2L 16264098 16264101 4 89 4.0 3.0 3.5 0.9 94 chr2L 16264007 3` UTR crp - chr2L 16264054 3` UTR crp - chr2L 16264101 3` UTR crp - chr2L_4_16260001 chr2L_16260001 RAL-861 189 chr2L 16363942 16363971 chr2L 16364188 16364217 4 246 0.0 0.0 0.0 4.0 275 chr2L 16363942 intergenic not near genes chr2L 16364080 intergenic not near genes chr2L 16364217 intergenic not near genes chr2L_4_16360001 chr2L_16360001 RAL-861 190 chr2L 16432598 16432618 chr2L 16432695 16432715 5 97 0.0 3.5 1.8 1.8 117 chr2L 16432598 intron CG5888 - chr2L 16432656 intron CG5888 - chr2L 16432715 intron CG5888 - chr2L_5_16430001 chr2L_16430001 RAL-861 191 chr2L 16443988 16444021 chr2L 16444065 16444097 8 77 2.0 0.0 1.0 4.0 109 chr2L 16443988 intron CG5888 - chr2L 16444042 intron CG5888 - chr2L 16444097 intron CG5888 - chr2L_8_16440001 chr2L_16440001 RAL-861 192 chr2L 16487899 16487928 chr2L 16488009 16488035 6 107 0.0 2.0 1.0 3.0 136 chr2L 16487899 intergenic CG4580 + chr2L 16487967 intergenic CG4580 + chr2L 16488035 intergenic CG4580 + chr2L_6_16485001 chr2L_16485001 RAL-861 193 chr2L 16492731 16492755 chr2L 16492822 16492848 5 88 1.5 2.0 1.8 1.8 117 chr2L 16492731 intron Tpr2 + chr2L 16492790 intron Tpr2 + chr2L 16492848 intron Tpr2 + chr2L_5_16490001 chr2L_16490001 RAL-861 194 chr2L 16694132 16694162 chr2L 16694218 16694226 15 81 4.0 2.5 3.2 3.6 94 chr2L 16694132 intron grp + chr2L 16694179 intron grp + chr2L 16694226 intron grp + chr2L_15_16690001 chr2L_16690001 RAL-861 195 chr2L 17000119 17000144 chr2L 17000241 17000266 4 122 3.0 3.5 3.2 1.0 147 chr2L 17000119 intergenic not near genes chr2L 17000192 intergenic not near genes chr2L 17000266 intergenic not near genes chr2L_4_17000001 chr2L_17000001 RAL-861 196 chr2L 17101909 17101912 chr2L 17101986 17101988 4 76 3.0 2.5 2.8 1.1 79 chr2L 17101909 intergenic not near genes chr2L 17101948 intergenic not near genes chr2L 17101988 intergenic not near genes chr2L_4_17100001 chr2L_17100001 RAL-861 197 chr2L 17184806 17184834 chr2L 17185104 17185108 7 293 3.0 2.5 2.8 1.8 302 chr2L 17184806 intergenic not near genes chr2L 17184957 intergenic not near genes chr2L 17185108 intergenic not near genes chr2L_7_17180001 chr2L_17180001 RAL-861 198 chr2L 17273202 17273226 chr2L 17277973 17277992 F-element 7 4775 4.5 2.0 3.2 1.7 4790 chr2L 17273202 intergenic not near genes chr2L 17275597 intergenic not near genes chr2L 17277992 intergenic not near genes chr2L_7_17275001 chr2L_17275001 RAL-861 199 chr2L 17300900 17300909 chr2L 17301142 17301151 4 242 1.0 1.5 1.2 1.8 251 chr2L 17300900 intergenic not near genes chr2L 17301026 intergenic not near genes chr2L 17301151 intergenic not near genes chr2L_4_17300001 chr2L_17300001 RAL-861 200 chr2L 17303439 17303461 chr2L 17303617 17303620 7 174 4.5 1.5 3.0 1.8 181 chr2L 17303439 intergenic not near genes chr2L 17303530 intergenic not near genes chr2L 17303620 intergenic not near genes chr2L_7_17300001 chr2L_17300001 RAL-861 201 chr2L 17360028 17360049 chr2L 17360206 17360227 7 175 1.0 0.0 0.5 4.7 199 chr2L 17360028 intergenic not near genes chr2L 17360128 intergenic not near genes chr2L 17360227 intergenic not near genes chr2L_7_17360001 chr2L_17360001 RAL-861 202 chr2L 17377288 17377314 chr2L 17377381 17377385 11 92 2.0 2.0 2.0 3.7 97 chr2L 17377288 intron Lrch - chr2L 17377336 intron Lrch - chr2L 17377385 intron Lrch - chr2L_11_17375001 chr2L_17375001 RAL-861 203 chr2L 17432643 17432667 chr2L 17432712 17432720 5 66 2.0 3.5 2.8 1.3 77 chr2L 17432643 intron Dif - chr2L 17432682 intron Dif - chr2L 17432720 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-861 204 chr2L 17517860 17517879 chr2L 17517943 17517962 6 82 1.0 3.0 2.0 2.0 102 chr2L 17517860 intron Dhc36C + chr2L 17517911 intron Dhc36C + chr2L 17517962 intron Dhc36C + chr2L_6_17515001 chr2L_17515001 RAL-861 205 chr2L 17692949 17692963 chr2L 17693063 17693076 6 113 4.5 0.5 2.5 1.7 127 chr2L 17692949 intron CadN - chr2L 17693012 intron CadN - chr2L 17693076 intron CadN - chr2L_6_17690001 chr2L_17690001 RAL-861 206 chr2L 17703653 17703681 chr2L 17703737 17703759 8 84 3.0 0.0 1.5 3.2 106 chr2L 17703653 intron CadN - chr2L 17703706 intron CadN - chr2L 17703759 intron CadN - chr2L_8_17700001 chr2L_17700001 RAL-861 207 chr2L 17709117 17709150 chr2L 17709201 17709234 5 78 0.5 1.0 0.8 2.8 117 chr2L 17709117 intron CadN - chr2L 17709176 intron CadN - chr2L 17709234 intron CadN - chr2L_5_17705001 chr2L_17705001 RAL-861 208 chr2L 17727868 17727880 chr2L 17729335 17729347 hobo 5 1466 2.5 3.5 3.0 1.2 1479 chr2L 17727868 intron CadN - chr2L 17728608 intron CadN - chr2L 17729347 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-861 209 chr2L 17741967 17741989 chr2L 17742035 17742045 5 62 2.5 2.0 2.2 1.6 78 chr2L 17741967 intron CadN - chr2L 17742006 intron CadN - chr2L 17742045 intron CadN - chr2L_5_17740001 chr2L_17740001 RAL-861 210 chr2L 17819940 17819954 chr2L 17825143 17825157 copia 5 5202 0.5 3.5 2.0 1.7 5217 chr2L 17819940 intron CadN2 - chr2L 17822548 intron CadN2 - chr2L 17825157 intron CadN2 - chr2L_5_17820001 chr2L_17820001 RAL-861 211 chr2L 17897226 17897253 chr2L 17897298 17897314 7 73 2.5 3.0 2.8 1.8 88 chr2L 17897226 intergenic not near genes chr2L 17897270 intergenic not near genes chr2L 17897314 intergenic not near genes chr2L_7_17895001 chr2L_17895001 RAL-861 212 chr2L 17911971 17911990 chr2L 17914149 17914166 pogo 7 2177 4.5 3.0 3.8 1.5 2195 chr2L 17911971 intergenic not near genes chr2L 17913068 intergenic not near genes chr2L 17914166 intergenic CG43271 - chr2L_7_17910001 chr2L_17910001 RAL-861 213 chr2L 17933529 17933558 chr2L 17933920 17933948 9 391 1.5 2.5 2.0 3.0 419 chr2L 17933529 intergenic not near genes chr2L 17933738 intergenic not near genes chr2L 17933948 intergenic not near genes chr2L_9_17930001 chr2L_17930001 RAL-861 214 chr2L 17943352 17943384 chr2L 17943620 17943645 9 267 2.5 1.5 2.0 3.0 293 chr2L 17943352 intergenic not near genes chr2L 17943498 intergenic not near genes chr2L 17943645 intergenic not near genes chr2L_9_17940001 chr2L_17940001 RAL-861 215 chr2L 17943898 17943912 chr2L 17944001 17944011 5 102 4.0 2.5 3.2 1.2 113 chr2L 17943898 intergenic not near genes chr2L 17943954 intergenic not near genes chr2L 17944011 intergenic not near genes chr2L_5_17940001 chr2L_17940001 RAL-861 216 chr2L 18051874 18051907 chr2L 18061020 18061054 roo 7 9144 2.0 2.0 2.0 2.3 9180 chr2L 18051874 intron rdo + chr2L 18056464 intron rdo + chr2L 18061054 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-861 217 chr2L 18111251 18111269 chr2L 18111339 18111343 5 84 1.0 2.0 1.5 2.0 92 chr2L 18111251 intergenic not near genes chr2L 18111297 intergenic not near genes chr2L 18111343 intergenic not near genes chr2L_5_18110001 chr2L_18110001 RAL-861 218 chr2L 18255481 18255515 chr2L 18255566 18255600 9 81 2.0 4.5 3.2 2.1 119 chr2L 18255481 intron CG42750 - chr2L 18255540 intron CG42750 - chr2L 18255600 intron CG42750 - chr2L_9_18255001 chr2L_18255001 RAL-861 219 chr2L 18286423 18286449 chr2L 18286516 18286542 5 92 0.0 2.0 1.0 2.5 119 chr2L 18286423 intergenic not near genes chr2L 18286482 intergenic not near genes chr2L 18286542 intergenic not near genes chr2L_5_18285001 chr2L_18285001 RAL-861 220 chr2L 18408024 18408046 chr2L 18412808 18412830 Doc 9 4783 3.0 0.0 1.5 3.6 4806 chr2L 18408024 intergenic not near genes chr2L 18410427 intergenic not near genes chr2L 18412830 intergenic not near genes chr2L_9_18410001 chr2L_18410001 RAL-861 221 chr2L 18440053 18440349 chr2L 18440319 18440455 7 150 0.5 0.5 0.5 4.7 402 chr2L 18440053 intergenic not near genes chr2L 18440254 intergenic not near genes chr2L 18440455 intergenic not near genes chr2L_7_18440001 chr2L_18440001 RAL-861 222 chr2L 18584767 18584778 chr2L 18584852 18584863 4 85 3.0 2.0 2.5 1.1 96 chr2L 18584767 intron Pde11 - chr2L 18584815 intron Pde11 - chr2L 18584863 intron Pde11 - chr2L_4_18580001 chr2L_18580001 RAL-861 223 chr2L 18629389 18629404 chr2L 18629457 18629466 4 73 0.5 2.5 1.5 1.6 77 chr2L 18629389 intron MESR3 + chr2L 18629428 intron MESR3 + chr2L 18629466 intron MESR3 + chr2L_4_18625001 chr2L_18625001 RAL-861 224 chr2L 18629129 18629155 chr2L 18629947 18629958 5 805 25.0 18.0 21.5 0.2 829 chr2L 18629129 intron MESR3 + chr2L 18629544 intron MESR3 + chr2L 18629958 intron MESR3 + chr2L_5_18625001 chr2L_18625001 RAL-861 225 chr2L 18656472 18656504 chr2L 18656726 18656758 14 247 2.5 3.5 3.0 3.5 286 chr2L 18656472 intron MESR3 + chr2L 18656615 intron MESR3 + chr2L 18656758 intron MESR3 + chr2L_14_18655001 chr2L_18655001 RAL-861 226 chr2L 18791073 18791086 chr2L 18791152 18791164 6 78 4.0 1.0 2.5 1.7 91 chr2L 18791073 intron ham - chr2L 18791118 intron ham - chr2L 18791164 intron ham - chr2L_6_18790001 chr2L_18790001 RAL-861 227 chr2L 18812562 18812590 chr2L 18812825 18812853 13 262 4.5 6.0 5.2 2.1 291 chr2L 18812562 intergenic CG17325 +,CG42305 + chr2L 18812708 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812853 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_13_18810001 chr2L_18810001 RAL-861 228 chr2L 18990313 18990341 chr2L 18990423 18990448 6 108 2.0 1.0 1.5 2.4 135 chr2L 18990313 intergenic CG15170 - chr2L 18990380 intergenic CG15170 - chr2L 18990448 intergenic CG15170 - chr2L_6_18990001 chr2L_18990001 RAL-861 229 chr2L 19337580 19337598 chr2L 19338129 19338165 6 558 3.0 2.0 2.5 1.7 585 chr2L 19337580 intergenic not near genes chr2L 19337872 intergenic not near genes chr2L 19338165 intergenic not near genes chr2L_6_19335001 chr2L_19335001 RAL-861 230 chr2L 19345021 19345048 chr2L 19357230 19357253 blood 6 12208 1.0 2.0 1.5 2.4 12232 chr2L 19345021 intron dnt - chr2L 19351137 intron dnt - chr2L 19357253 intron dnt - chr2L_6_19350001 chr2L_19350001 RAL-861 231 chr2L 19380510 19380527 chr2L 19380587 19380607 4 79 1.5 1.0 1.2 1.8 97 chr2L 19380510 intergenic CG17350 + chr2L 19380558 intergenic CG17350 + chr2L 19380607 intergenic CG17350 + chr2L_4_19380001 chr2L_19380001 RAL-861 232 chr2L 19562543 19562561 chr2L 19562623 19562640 6 78 0.5 5.0 2.8 1.6 97 chr2L 19562543 intron Tep5 + chr2L 19562592 intron Tep5 + chr2L 19562640 exon Tep5 + chr2L_6_19560001 chr2L_19560001 RAL-861 233 chr2L 19601574 19601600 chr2L 19601651 19601677 5 77 0.5 1.5 1.0 2.5 103 chr2L 19601574 intron,intron Lar +,CR44978 - chr2L 19601626 intron,intron Lar +,CR44978 - chr2L 19601677 intron,intron Lar +,CR44978 - chr2L_5_19600001 chr2L_19600001 RAL-861 234 chr2L 19620095 19620132 chr2L 19621082 19621112 jockey 12 984 2.5 3.0 2.8 3.2 1017 chr2L 19620095 intron Lar + chr2L 19620604 intron Lar + chr2L 19621112 intron Lar + chr2L_12_19620001 chr2L_19620001 RAL-861 235 chr2L 19652575 19652600 chr2L 19674009 19674009 opus 6 21430 3.0 2.5 2.8 1.6 21434 chr2L 19652575 intron Lar + chr2L 19663292 intron Lar + chr2L 19674009 intron Lar + chr2L_6_19660001 chr2L_19660001 RAL-861 236 chr2L 19689063 19689083 chr2L 19689167 19689187 6 104 2.5 3.5 3.0 1.5 124 chr2L 19689063 intron Lar + chr2L 19689125 intron Lar + chr2L 19689187 intron Lar + chr2L_6_19685001 chr2L_19685001 RAL-861 237 chr2L 19703539 19703559 chr2L 19712675 19712695 roo 4 9135 2.0 1.5 1.8 1.4 9156 chr2L 19703539 intron Lar + chr2L 19708117 intron Lar + chr2L 19712695 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-861 238 chr2L 19837276 19837298 chr2L 19837356 19837378 14 78 5.0 4.0 4.5 2.5 102 chr2L 19837276 intron sick + chr2L 19837327 intron sick + chr2L 19837378 intron sick + chr2L_14_19835001 chr2L_19835001 RAL-861 239 chr2L 19846248 19846269 chr2L 19846328 19846350 6 80 1.0 3.5 2.2 1.9 102 chr2L 19846248 intron sick + chr2L 19846299 intron sick + chr2L 19846350 intron sick + chr2L_6_19845001 chr2L_19845001 RAL-861 240 chr2L 19865422 19865450 chr2L 19865508 19865525 4 83 1.5 1.5 1.5 1.6 103 chr2L 19865422 intron sick + chr2L 19865474 intron sick + chr2L 19865525 intron sick + chr2L_4_19865001 chr2L_19865001 RAL-861 241 chr2L 19878992 19879019 chr2L 19879201 19879228 6 208 1.5 3.0 2.2 1.9 236 chr2L 19878992 intron sick + chr2L 19879110 intron sick + chr2L 19879228 intron sick + chr2L_6_19875001 chr2L_19875001 RAL-861 242 chr2L 19902339 19902368 chr2L 19902465 19902488 5 125 1.5 6.5 4.0 1.0 149 chr2L 19902339 intron sick + chr2L 19902414 intron sick + chr2L 19902488 intron sick + chr2L_5_19900001 chr2L_19900001 RAL-861 243 chr2L 20085478 20085495 chr2L 20085570 20085587 9 92 2.0 5.0 3.5 2.0 109 chr2L 20085478 intron neb + chr2L 20085532 intron neb + chr2L 20085587 intron neb + chr2L_9_20085001 chr2L_20085001 RAL-861 244 chr2L 20124327 20124355 chr2L 20124405 20124416 6 74 1.5 0.0 0.8 3.3 89 chr2L 20124327 intergenic not near genes chr2L 20124372 intergenic not near genes chr2L 20124416 intergenic not near genes chr2L_6_20120001 chr2L_20120001 RAL-861 245 chr2L 20271262 20271271 chr2L 20271345 20271353 5 81 5.0 9.5 7.2 0.6 91 chr2L 20271262 intergenic not near genes chr2L 20271308 intergenic not near genes chr2L 20271353 intergenic not near genes chr2L_5_20270001 chr2L_20270001 RAL-861 246 chr2L 20272129 20272139 chr2L 20282838 20282850 copia 7 10711 4.0 2.0 3.0 1.8 10721 chr2L 20272129 intergenic not near genes chr2L 20277490 intergenic not near genes chr2L 20282850 intergenic not near genes chr2L_7_20275001 chr2L_20275001 RAL-861 247 chr2L 20296515 20296541 chr2L 20296596 20296622 8 79 1.0 2.5 1.8 2.9 107 chr2L 20296515 intergenic CR43414 - chr2L 20296568 intergenic CR43414 - chr2L 20296622 intergenic CR43414 - chr2L_8_20295001 chr2L_20295001 RAL-861 248 chr2L 20298830 20298854 chr2L 20298913 20298937 8 82 1.0 4.0 2.5 2.3 107 chr2L 20298830 intergenic not near genes chr2L 20298884 intergenic not near genes chr2L 20298937 intergenic not near genes chr2L_8_20295001 chr2L_20295001 RAL-861 249 chr2L 20310879 20310917 chr2L 20310959 20310996 4 79 0.0 2.5 1.2 1.8 117 chr2L 20310879 intergenic spir + chr2L 20310938 intergenic spir + chr2L 20310996 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-861 250 chr2L 20498691 20498705 chr2L 20498790 20498804 4 98 3.0 4.5 3.8 0.8 113 chr2L 20498691 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498804 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-861 251 chr2L 20576222 20576251 chr2L 20583690 20583718 blood 10 7466 3.0 2.0 2.5 2.9 7496 chr2L 20576222 intergenic not near genes chr2L 20579970 intergenic not near genes chr2L 20583718 3` UTR CR44909 - chr2L_10_20575001 chr2L_20575001 RAL-861 252 chr2L 20623920 20623945 chr2L 20623999 20624020 5 78 1.5 2.5 2.0 1.7 100 chr2L 20623920 intron CR44909 - chr2L 20623970 intron CR44909 - chr2L 20624020 intron CR44909 - chr2L_5_20620001 chr2L_20620001 RAL-861 253 chr2L 20804711 20804733 chr2L 20804791 20804818 5 84 5.0 1.0 3.0 1.2 107 chr2L 20804711 intron CG9328 + chr2L 20804764 intron CG9328 + chr2L 20804818 intron CG9328 + chr2L_5_20800001 chr2L_20800001 RAL-861 254 chr2L 20967929 20967959 chr2L 20968022 20968052 9 89 3.5 5.0 4.2 1.7 123 chr2L 20967929 intron CG42238 - chr2L 20967990 intron CG42238 - chr2L 20968052 intron CG42238 - chr2L_9_20965001 chr2L_20965001 RAL-861 255 chr2L 20984614 20984637 chr2L 20984684 20984718 7 78 0.5 3.5 2.0 2.3 104 chr2L 20984614 intron CG42238 - chr2L 20984666 intron CG42238 - chr2L 20984718 intron CG42238 - chr2L_7_20980001 chr2L_20980001 RAL-861 256 chr2L 21020271 21020310 chr2L 21023948 21023980 NOF 16 3674 3.5 2.0 2.8 4.2 3709 chr2L 21020271 intron CG42238 - chr2L 21022126 intron CG42238 - chr2L 21023980 intron CG42238 - chr2L_16_21020001 chr2L_21020001 RAL-861 257 chr2L 21196180 21196195 chr2L 21196300 21196303 9 122 1.5 2.5 2.0 3.0 123 chr2L 21196180 intron Ret - chr2L 21196242 intron Ret - chr2L 21196303 intron Ret - chr2L_9_21195001 chr2L_21195001 RAL-861 258 chr2L 21284060 21284085 chr2L 21284525 21284557 10 466 2.5 4.0 3.2 2.4 497 chr2L 21284060 intergenic not near genes chr2L 21284308 intergenic not near genes chr2L 21284557 intergenic not near genes chr2L_10_21280001 chr2L_21280001 RAL-861 259 chr2L 21285645 21285669 chr2L 21285742 21285762 7 93 4.0 5.0 4.5 1.3 117 chr2L 21285645 intergenic Mio - chr2L 21285704 intergenic Mio - chr2L 21285762 intergenic Mio - chr2L_7_21285001 chr2L_21285001 RAL-861 260 chr2L 21286604 21286632 chr2L 21286682 21286691 5 74 2.0 0.5 1.2 2.3 87 chr2L 21286604 exon Mio - chr2L 21286648 intron Mio - chr2L 21286691 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-861 261 chr2L 21597027 21597061 chr2L 21604771 21604805 roo 5 7740 1.5 2.0 1.8 1.8 7778 chr2L 21597027 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604805 intergenic not near genes chr2L_5_21600001 chr2L_21600001 RAL-861 262 chr2L 21859332 21859342 chr2L 21859403 21859404 4 72 4.5 2.0 3.2 1.0 72 chr2L 21859332 intron CR44917 + chr2L 21859368 intron CR44917 + chr2L 21859404 intron CR44917 + chr2L_4_21855001 chr2L_21855001 RAL-861 263 chr2L 21981696 21981715 chr2L 21990861 21990880 roo 6 9164 1.5 8.5 5.0 1.0 9184 chr2L 21981696 exon CG2528 - chr2L 21986288 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_6_21985001 chr2L_21985001 RAL-861 264 chr2L 22025827 22025841 chr2L 22025906 22025911 4 77 2.5 2.0 2.2 1.2 84 chr2L 22025827 intergenic tio + chr2L 22025869 intergenic tio + chr2L 22025911 intergenic tio + chr2L_4_22025001 chr2L_22025001 RAL-861 265 chr2L 22035208 22035232 chr2L 22035284 22035285 5 72 1.5 4.0 2.8 1.3 77 chr2L 22035208 intergenic not near genes chr2L 22035246 intergenic not near genes chr2L 22035285 intergenic not near genes chr2L_5_22035001 chr2L_22035001 RAL-861 266 chr2L 22179545 22179576 chr2L 22179619 22179653 13 72 0.5 4.5 2.5 3.7 108 chr2L 22179545 intron CG3635 + chr2L 22179599 intron CG3635 + chr2L 22179653 intron CG3635 + chr2L_13_22175001 chr2L_22175001 RAL-861 267 chr2L 22215908 22215925 chr2L 22215993 22216006 4 84 5.0 3.0 4.0 0.8 98 chr2L 22215908 intergenic not near genes chr2L 22215957 intergenic not near genes chr2L 22216006 intergenic not near genes chr2L_4_22215001 chr2L_22215001 RAL-861 268 chr2L 22239430 22239460 chr2L 22239510 22239540 11 75 3.5 1.5 2.5 3.1 110 chr2L 22239430 3` UTR CR43765 - chr2L 22239485 3` UTR CR43765 - chr2L 22239540 3` UTR CR43765 - chr2L_11_22235001 chr2L_22235001 RAL-861 269 chr2L 22548932 22548938 chr2L 22550157 22550163 1360 4 1225 0.5 4.0 2.2 1.2 1231 chr2L 22548932 intergenic CG17490 + chr2L 22549548 intergenic not near genes chr2L 22550163 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-861 270 chr2L 22581971 22581992 chr2L 22583760 22583781 S-element 4 1788 1.5 1.0 1.2 1.8 1810 chr2L 22581971 intron CG17494 + chr2L 22582876 intron CG17494 + chr2L 22583781 intron CG17494 + chr2L_4_22580001 chr2L_22580001 RAL-861 271 chr2L 171941 171943 chr2L 23165295 23165296 4 22993354 9.5 6.5 8.0 0.4 22993355 chr2L 171941 intron spen + chr2L 11668618 intergenic not near genes chr2L 23165296 intron CG12567 - chr2L_4_11665001 chr2L_11665001 RAL-861 272 chr2L 23181405 23181424 chr2L 23181514 23181533 4 109 1.0 2.0 1.5 1.6 128 chr2L 23181405 intergenic not near genes chr2L 23181469 intergenic not near genes chr2L 23181533 intergenic not near genes chr2L_4_23180001 chr2L_23180001 RAL-861 273 chr2R 529323 529351 chr2R 537948 537975 Max-element 8 8620 3.0 4.5 3.8 1.7 8652 chr2R 529323 intron CG40378 + chr2R 533649 intron CG40378 + chr2R 537975 intron CG40378 + chr2R_8_530001 chr2R_530001 RAL-861 274 chr2R 1082376 1082385 chr2R 1087127 1087130 Doc 4 4756 5.5 3.5 4.5 0.7 4754 chr2R 1082376 intron rl + chr2R 1084753 intron rl + chr2R 1087130 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-861 275 chr2R 3144096 3144110 chr2R 3393367 3393388 Doc 4 249276 9.0 8.5 8.8 0.4 249292 chr2R 3144096 intron CG42596 + chr2R 3268742 intergenic not near genes chr2R 3393388 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-861 276 chr2R 4580585 4580616 chr2R 4580791 4580822 8 206 0.0 4.5 2.2 2.5 237 chr2R 4580585 intergenic not near genes chr2R 4580704 intergenic not near genes chr2R 4580822 intergenic not near genes chr2R_8_4580001 chr2R_4580001 RAL-861 277 chr2R 4898816 4898850 chr2R 4898930 4898943 8 109 4.0 4.5 4.2 1.5 127 chr2R 4898816 intron CG44102 - chr2R 4898880 intron CG44102 - chr2R 4898943 intron CG44102 - chr2R_8_4895001 chr2R_4895001 RAL-861 278 chr2R 4900524 4900544 chr2R 4900629 4900635 6 102 6.0 1.0 3.5 1.3 111 chr2R 4900524 intron CG44102 - chr2R 4900580 intron CG44102 - chr2R 4900635 intron CG44102 - chr2R_6_4900001 chr2R_4900001 RAL-861 279 chr2R 4916111 4916140 chr2R 4916195 4916224 6 84 0.0 3.5 1.8 2.1 113 chr2R 4916111 intergenic not near genes chr2R 4916168 intergenic not near genes chr2R 4916224 intergenic not near genes chr2R_6_4915001 chr2R_4915001 RAL-861 280 chr2R 4940963 4940979 chr2R 4943412 4943428 4 2446 10.0 18.0 14.0 0.3 2465 chr2R 4940963 intron Ir41a + chr2R 4942196 intron Ir41a + chr2R 4943428 intron Ir41a + chr2R_4_4940001 chr2R_4940001 RAL-861 281 chr2R 4973752 4973769 chr2R 4973836 4973863 6 92 4.5 2.0 3.2 1.4 111 chr2R 4973752 intron Ir41a + chr2R 4973808 intron Ir41a + chr2R 4973863 intron Ir41a + chr2R_6_4970001 chr2R_4970001 RAL-861 282 chr2R 5019293 5019307 chr2R 5019379 5019390 4 85 2.0 4.0 3.0 1.0 97 chr2R 5019293 intron Ir41a + chr2R 5019342 intron Ir41a + chr2R 5019390 intron Ir41a + chr2R_4_5015001 chr2R_5015001 RAL-861 283 chr2R 5043808 5043837 chr2R 5043899 5043930 5 93 3.5 1.5 2.5 1.4 122 chr2R 5043808 intergenic not near genes chr2R 5043869 intergenic not near genes chr2R 5043930 intergenic not near genes chr2R_5_5040001 chr2R_5040001 RAL-861 284 chr2R 5075223 5075252 chr2R 5075351 5075364 12 126 3.5 0.0 1.8 4.3 141 chr2R 5075223 intergenic not near genes chr2R 5075294 intergenic not near genes chr2R 5075364 intergenic not near genes chr2R_12_5075001 chr2R_5075001 RAL-861 285 chr2R 5075354 5075368 chr2R 5075770 5075783 6 416 0.0 4.0 2.0 2.0 429 chr2R 5075354 intergenic not near genes chr2R 5075568 intergenic not near genes chr2R 5075783 intergenic not near genes chr2R_6_5075001 chr2R_5075001 RAL-861 286 chr2R 5080802 5080811 chr2R 5080889 5080902 4 90 1.5 3.0 2.2 1.2 100 chr2R 5080802 intergenic not near genes chr2R 5080852 intergenic not near genes chr2R 5080902 intergenic not near genes chr2R_4_5080001 chr2R_5080001 RAL-861 287 chr2R 5175890 5175904 chr2R 5175960 5175977 8 76 3.5 2.5 3.0 2.0 87 chr2R 5175890 intergenic not near genes chr2R 5175934 intergenic not near genes chr2R 5175977 intergenic not near genes chr2R_8_5175001 chr2R_5175001 RAL-861 288 chr2R 5455783 5455806 chr2R 5455852 5455883 6 73 4.5 5.0 4.8 1.0 100 chr2R 5455783 3` UTR laccase2 + chr2R 5455833 3` UTR laccase2 + chr2R 5455883 3` UTR laccase2 + chr2R_6_5455001 chr2R_5455001 RAL-861 289 chr2R 5472375 5472392 chr2R 5472470 5472486 6 94 2.5 2.5 2.5 1.7 111 chr2R 5472375 intron CG30440 - chr2R 5472430 intron CG30440 - chr2R 5472486 intron CG30440 - chr2R_6_5470001 chr2R_5470001 RAL-861 290 chr2R 5603195 5603205 chr2R 5603277 5603287 4 82 2.5 0.5 1.5 1.6 92 chr2R 5603195 intergenic Fis1 - chr2R 5603241 intergenic Fis1 - chr2R 5603287 intergenic Fis1 - chr2R_4_5600001 chr2R_5600001 RAL-861 291 chr2R 5772546 5772747 chr2R 5772598 5772860 4 98 1.0 3.5 2.2 1.2 314 chr2R 5772546 3` UTR Gp210 + chr2R 5772703 3` UTR Gp210 + chr2R 5772860 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-861 292 chr2R 5861287 5861318 chr2R 5861407 5861421 9 115 3.0 3.5 3.2 2.1 134 chr2R 5861287 intergenic dpr12 + chr2R 5861354 intergenic not near genes chr2R 5861421 intergenic not near genes chr2R_9_5860001 chr2R_5860001 RAL-861 293 chr2R 5869278 5869301 chr2R 5874353 5874363 flea 10 5072 3.5 2.0 2.8 2.6 5085 chr2R 5869278 intergenic not near genes chr2R 5871820 intergenic not near genes chr2R 5874363 intergenic not near genes chr2R_10_5870001 chr2R_5870001 RAL-861 294 chr2R 6096723 6096752 chr2R 6101921 6101945 BS 5 5192 5.5 6.0 5.8 0.7 5222 chr2R 6096723 intron EcR - chr2R 6099334 intron EcR - chr2R 6101945 intron EcR - chr2R_5_6095001 chr2R_6095001 RAL-861 295 chr2R 6194685 6194696 chr2R 6194768 6194779 4 83 5.5 4.0 4.8 0.7 94 chr2R 6194685 intron Ptr - chr2R 6194732 intron Ptr - chr2R 6194779 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-861 296 chr2R 6530546 6530568 chr2R 6530678 6530701 4 133 2.0 0.5 1.2 1.8 155 chr2R 6530546 intron jing + chr2R 6530624 intron jing + chr2R 6530701 intron jing + chr2R_4_6530001 chr2R_6530001 RAL-861 297 chr2R 6555629 6555663 chr2R 6555706 6555740 10 73 2.0 2.0 2.0 3.3 111 chr2R 6555629 intron jing + chr2R 6555684 intron jing + chr2R 6555740 intron jing + chr2R_10_6555001 chr2R_6555001 RAL-861 298 chr2R 6587506 6587520 chr2R 6587584 6587598 6 78 6.0 3.0 4.5 1.1 92 chr2R 6587506 intron jing + chr2R 6587552 intron jing + chr2R 6587598 intron jing + chr2R_6_6585001 chr2R_6585001 RAL-861 299 chr2R 6712587 6712600 chr2R 6712684 6712697 5 97 5.5 2.0 3.8 1.0 110 chr2R 6712587 intron,intron CG3409 -,CG45092 - chr2R 6712642 intron,intron CG3409 -,CG45092 - chr2R 6712697 intron,intron CG3409 -,CG45092 - chr2R_5_6710001 chr2R_6710001 RAL-861 300 chr2R 6846310 6846328 chr2R 6846387 6846405 4 77 2.0 3.0 2.5 1.1 95 chr2R 6846310 intergenic not near genes chr2R 6846358 intergenic not near genes chr2R 6846405 intergenic not near genes chr2R_4_6845001 chr2R_6845001 RAL-861 301 chr2R 6978856 6978880 chr2R 6979123 6979137 4 265 1.0 2.0 1.5 1.6 281 chr2R 6978856 intron vimar - chr2R 6978996 intron vimar - chr2R 6979137 intron vimar - chr2R_4_6975001 chr2R_6975001 RAL-861 302 chr2R 7052043 7052070 chr2R 7052115 7052127 11 74 5.0 1.5 3.2 2.6 84 chr2R 7052043 intergenic lbm + chr2R 7052085 intergenic lbm + chr2R 7052127 intergenic lbm + chr2R_11_7050001 chr2R_7050001 RAL-861 303 chr2R 7091209 7091234 chr2R 7091291 7091313 4 76 0.5 0.5 0.5 2.7 104 chr2R 7091209 intron esn + chr2R 7091261 intron esn + chr2R 7091313 intron esn + chr2R_4_7090001 chr2R_7090001 RAL-861 304 chr2R 7101624 7101648 chr2R 7101707 7101742 11 91 4.5 1.0 2.8 2.9 118 chr2R 7101624 intron esn + chr2R 7101683 intron esn + chr2R 7101742 intron esn + chr2R_11_7100001 chr2R_7100001 RAL-861 305 chr2R 7139946 7139956 chr2R 7141436 7141448 hopper2 4 1490 2.5 6.0 4.2 0.8 1502 chr2R 7139946 intergenic not near genes chr2R 7140697 intergenic not near genes chr2R 7141448 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-861 306 chr2R 7235830 7235853 chr2R 7240908 7240937 jockey 11 5086 3.5 1.5 2.5 3.1 5107 chr2R 7235830 intergenic not near genes chr2R 7238384 intergenic not near genes chr2R 7240937 intergenic not near genes chr2R_11_7235001 chr2R_7235001 RAL-861 307 chr2R 7642340 7642354 chr2R 7642504 7642520 11 164 5.0 2.5 3.8 2.3 180 chr2R 7642340 intron CG43340 + chr2R 7642430 intron CG43340 + chr2R 7642520 intron CG43340 + chr2R_11_7640001 chr2R_7640001 RAL-861 308 chr2R 7642875 7642892 chr2R 7642955 7642972 4 79 2.5 3.5 3.0 1.0 97 chr2R 7642875 intron CG43340 + chr2R 7642924 intron CG43340 + chr2R 7642972 intron CG43340 + chr2R_4_7640001 chr2R_7640001 RAL-861 309 chr2R 7815673 7815697 chr2R 7822140 7822166 Burdock 5 6468 2.0 1.5 1.8 1.8 6493 chr2R 7815673 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822166 3` UTR cathD - chr2R_5_7815001 chr2R_7815001 RAL-861 310 chr2R 7869199 7869222 chr2R 7873976 7873983 Doc 7 4777 1.0 2.0 1.5 2.8 4784 chr2R 7869199 intron Dgk - chr2R 7871591 intron Dgk - chr2R 7873983 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-861 311 chr2R 7916428 7916457 chr2R 7916513 7916542 5 84 1.5 4.5 3.0 1.2 114 chr2R 7916428 5` UTR CG12159 - chr2R 7916485 intergenic CG12159 -,Cul1 + chr2R 7916542 intergenic CG12159 -,Cul1 + chr2R_5_7915001 chr2R_7915001 RAL-861 312 chr2R 8015670 8015680 chr2R 8017674 8017702 4 2018 1.5 2.5 2.0 1.3 2032 chr2R 8015670 intergenic mir-4981 + chr2R 8016686 intergenic not near genes chr2R 8017702 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-861 313 chr2R 8067063 8067095 chr2R 8067147 8067156 9 79 0.5 3.0 1.8 3.2 93 chr2R 8067063 intron CG17977 - chr2R 8067110 intron CG17977 - chr2R 8067156 exon CG17977 - chr2R_9_8065001 chr2R_8065001 RAL-861 314 chr2R 8089266 8089288 chr2R 8089344 8089374 9 83 2.0 0.0 1.0 4.5 108 chr2R 8089266 3` UTR sut2 + chr2R 8089320 intergenic sut2 +,sut3 + chr2R 8089374 intergenic sut2 +,sut3 + chr2R_9_8085001 chr2R_8085001 RAL-861 315 chr2R 8330873 8330891 chr2R 8331346 8331354 roo 4 477 1.5 1.0 1.2 1.8 481 chr2R 8330873 intron pdm3 + chr2R 8331114 intron pdm3 + chr2R 8331354 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-861 316 chr2R 8398214 8398242 chr2R 8402994 8403022 Doc 4 4778 4.5 3.5 4.0 0.8 4808 chr2R 8398214 intron CG2121 - chr2R 8400618 intron CG2121 - chr2R 8403022 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-861 317 chr2R 8413384 8413393 chr2R 8414099 8414115 4 718 21.0 14.5 17.8 0.2 731 chr2R 8413384 intergenic not near genes chr2R 8413750 intergenic not near genes chr2R 8414115 intergenic not near genes chr2R_4_8410001 chr2R_8410001 RAL-861 318 chr2R 8508761 8508786 chr2R 8508844 8508869 5 83 2.0 8.0 5.0 0.8 108 chr2R 8508761 intron mtt - chr2R 8508815 intron mtt - chr2R 8508869 intron mtt - chr2R_5_8505001 chr2R_8505001 RAL-861 319 chr2R 8654001 8654020 chr2R 8654080 8654107 5 85 3.0 3.5 3.2 1.2 106 chr2R 8654001 intron ptc + chr2R 8654054 intron ptc + chr2R 8654107 intron ptc + chr2R_5_8650001 chr2R_8650001 RAL-861 320 chr2R 8790657 8790671 chr2R 8791137 8791154 4 482 3.5 1.0 2.2 1.2 497 chr2R 8790657 intergenic not near genes chr2R 8790906 intergenic not near genes chr2R 8791154 intergenic not near genes chr2R_4_8790001 chr2R_8790001 RAL-861 321 chr2R 9052709 9052724 chr2R 9052790 9052801 5 80 0.0 2.5 1.2 2.3 92 chr2R 9052709 intron CG13743 - chr2R 9052755 intron CG13743 - chr2R 9052801 intron CG13743 - chr2R_5_9050001 chr2R_9050001 RAL-861 322 chr2R 9230224 9230243 chr2R 9230304 9230316 7 78 1.0 2.0 1.5 2.8 92 chr2R 9230224 intron hig - chr2R 9230270 intron hig - chr2R 9230316 exon hig - chr2R_7_9230001 chr2R_9230001 RAL-861 323 chr2R 9368130 9368145 chr2R 9368202 9368206 4 69 6.5 0.0 3.2 1.0 76 chr2R 9368130 intron CG13954 - chr2R 9368168 intron CG13954 - chr2R 9368206 intron CG13954 - chr2R_4_9365001 chr2R_9365001 RAL-861 324 chr2R 9412087 9412095 chr2R 9412192 9412206 4 109 2.5 1.0 1.8 1.4 119 chr2R 9412087 intron wun - chr2R 9412146 intron wun - chr2R 9412206 intron wun - chr2R_4_9410001 chr2R_9410001 RAL-861 325 chr2R 9412096 9412111 chr2R 9412183 9412204 4 93 1.0 0.5 0.8 2.2 108 chr2R 9412096 intron wun - chr2R 9412150 intron wun - chr2R 9412204 intron wun - chr2R_4_9410001 chr2R_9410001 RAL-861 326 chr2R 9510665 9510698 chr2R 9510781 9510814 7 116 0.5 0.5 0.5 4.7 149 chr2R 9510665 intron brp + chr2R 9510740 intron brp + chr2R 9510814 intron brp + chr2R_7_9510001 chr2R_9510001 RAL-861 327 chr2R 9726623 9726644 chr2R 9734174 9734195 17.6 6 7550 1.5 1.0 1.2 2.7 7572 chr2R 9726623 intron sqa - chr2R 9730409 intron sqa - chr2R 9734195 intron sqa - chr2R_6_9730001 chr2R_9730001 RAL-861 328 chr2R 9950297 9950309 chr2R 9950374 9950386 4 77 3.5 1.5 2.5 1.1 89 chr2R 9950297 intron Mef2 - chr2R 9950342 intron Mef2 - chr2R 9950386 intron Mef2 - chr2R_4_9950001 chr2R_9950001 RAL-861 329 chr2R 10005853 10005872 chr2R 10007018 10007036 1360 4 1164 5.0 2.0 3.5 0.9 1183 chr2R 10005853 intron Pka-R2 - chr2R 10006444 intron Pka-R2 - chr2R 10007036 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-861 330 chr2R 10132203 10132219 chr2R 10132274 10132299 4 78 0.0 1.5 0.8 2.2 96 chr2R 10132203 intron gem + chr2R 10132251 intron gem + chr2R 10132299 intron gem + chr2R_4_10130001 chr2R_10130001 RAL-861 331 chr2R 10169553 10169563 chr2R 10169618 10169624 7 70 1.5 1.0 1.2 3.2 71 chr2R 10169553 intron KCNQ - chr2R 10169588 intron KCNQ - chr2R 10169624 intron KCNQ - chr2R_7_10165001 chr2R_10165001 RAL-861 332 chr2R 10469027 10469049 chr2R 10469153 10469175 14 124 2.5 4.0 3.2 3.3 148 chr2R 10469027 intron CG11777 + chr2R 10469101 intron CG11777 + chr2R 10469175 intron CG11777 + chr2R_14_10465001 chr2R_10465001 RAL-861 333 chr2R 10551073 10551174 chr2R 10551164 10551265 4 97 0.0 0.0 0.0 4.0 192 chr2R 10551073 intergenic not near genes chr2R 10551169 intergenic not near genes chr2R 10551265 intergenic not near genes chr2R_4_10550001 chr2R_10550001 RAL-861 334 chr2R 10585586 10585591 chr2R 10594153 10594174 Tirant 6 8577 2.5 3.0 2.8 1.6 8588 chr2R 10585586 intron psq + chr2R 10589880 intron psq + chr2R 10594174 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-861 335 chr2R 10790150 10790177 chr2R 10790238 10790265 10 84 2.0 6.5 4.2 1.9 115 chr2R 10790150 intron CG33144 - chr2R 10790208 intron CG33144 - chr2R 10790265 intron CG33144 - chr2R_10_10790001 chr2R_10790001 RAL-861 336 chr2R 11009814 11009848 chr2R 11018986 11019012 roo 6 9167 1.0 3.5 2.2 1.9 9198 chr2R 11009814 intron luna - chr2R 11014413 intron luna - chr2R 11019012 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-861 337 chr2R 11161102 11161135 chr2R 11161357 11161391 12 251 2.5 4.5 3.5 2.7 289 chr2R 11161102 intron,intron CG13229 -,shn + chr2R 11161246 intron,intron CG13229 -,shn + chr2R 11161391 intron,intron CG13229 -,shn + chr2R_12_11160001 chr2R_11160001 RAL-861 338 chr2R 11168067 11168076 chr2R 11168148 11168151 6 80 5.5 4.5 5.0 1.0 84 chr2R 11168067 intron,intron CG13229 -,shn + chr2R 11168109 intron,intron CG13229 -,shn + chr2R 11168151 intron,intron CG13229 -,shn + chr2R_6_11165001 chr2R_11165001 RAL-861 339 chr2R 11168078 11168096 chr2R 11168147 11168177 9 76 3.5 4.5 4.0 1.8 99 chr2R 11168078 intron,intron CG13229 -,shn + chr2R 11168128 intron,intron CG13229 -,shn + chr2R 11168177 intron,intron CG13229 -,shn + chr2R_9_11165001 chr2R_11165001 RAL-861 340 chr2R 11207820 11207852 chr2R 11208007 11208045 BS 6 192 5.0 3.0 4.0 1.2 225 chr2R 11207820 intron shn + chr2R 11207932 intron shn + chr2R 11208045 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-861 341 chr2R 11249188 11249190 chr2R 11249297 11249311 4 120 1.5 0.0 0.8 2.2 123 chr2R 11249188 intergenic CG43112 + chr2R 11249250 intergenic CG43112 + chr2R 11249311 intergenic CG43112 + chr2R_4_11245001 chr2R_11245001 RAL-861 342 chr2R 11344146 11344159 chr2R 11344242 11344255 5 96 0.0 0.5 0.2 4.2 109 chr2R 11344146 intergenic alphaTry - chr2R 11344200 intergenic alphaTry - chr2R 11344255 intergenic alphaTry - chr2R_5_11340001 chr2R_11340001 RAL-861 343 chr2R 11415526 11415551 chr2R 11418675 11418690 opus 4 3146 2.0 6.0 4.0 0.8 3164 chr2R 11415526 intron Drip - chr2R 11417108 intron Drip - chr2R 11418690 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-861 344 chr2R 11822981 11823004 chr2R 11823058 11823078 5 76 0.0 1.5 0.8 2.8 97 chr2R 11822981 intergenic not near genes chr2R 11823030 intergenic not near genes chr2R 11823078 intergenic not near genes chr2R_5_11820001 chr2R_11820001 RAL-861 345 chr2R 11826889 11826920 chr2R 11827001 11827032 5 111 1.5 0.5 1.0 2.5 143 chr2R 11826889 3` UTR CG13192 + chr2R 11826960 3` UTR CG13192 + chr2R 11827032 3` UTR CG13192 + chr2R_5_11825001 chr2R_11825001 RAL-861 346 chr2R 12120421 12120430 chr2R 12120492 12120511 4 78 2.5 3.0 2.8 1.1 90 chr2R 12120421 intergenic not near genes chr2R 12120466 intergenic not near genes chr2R 12120511 intergenic not near genes chr2R_4_12120001 chr2R_12120001 RAL-861 347 chr2R 12187471 12187508 chr2R 12190087 12190124 43 2623 143.0 93.0 118.0 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_43_12185001 chr2R_12185001 RAL-861 348 chr2R 12385346 12385370 chr2R 12385427 12385450 6 81 0.5 1.5 1.0 3.0 104 chr2R 12385346 intergenic not near genes chr2R 12385398 intergenic not near genes chr2R 12385450 intergenic not near genes chr2R_6_12385001 chr2R_12385001 RAL-861 349 chr2R 12481142 12481167 chr2R 12482938 12482970 roo 5 1796 3.5 2.5 3.0 1.2 1828 chr2R 12481142 exon Dh44-R2 + chr2R 12482056 intron Dh44-R2 + chr2R 12482970 intron Dh44-R2 + chr2R_5_12480001 chr2R_12480001 RAL-861 350 chr2R 12789294 12789320 chr2R 12797655 12797683 roo 7 8358 0.5 1.5 1.0 3.5 8389 chr2R 12789294 intron,3` UTR sca +,CR45137 - chr2R 12793488 intron,intron sca +,CR45137 - chr2R 12797683 intron,3` UTR sca +,CR45137 - chr2R_7_12790001 chr2R_12790001 RAL-861 351 chr2R 12808321 12808334 chr2R 12808416 12808429 5 94 5.0 2.0 3.5 1.1 108 chr2R 12808321 intergenic not near genes chr2R 12808375 intergenic not near genes chr2R 12808429 intergenic not near genes chr2R_5_12805001 chr2R_12805001 RAL-861 352 chr2R 12808335 12808346 chr2R 12808413 12808441 5 89 2.5 1.5 2.0 1.7 106 chr2R 12808335 intergenic not near genes chr2R 12808388 intergenic not near genes chr2R 12808441 intergenic not near genes chr2R_5_12805001 chr2R_12805001 RAL-861 353 chr2R 13136845 13136855 chr2R 13141643 13141653 Doc 4 4798 6.0 3.5 4.8 0.7 4808 chr2R 13136845 exon Cap-G + chr2R 13139249 intron Cap-G + chr2R 13141653 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-861 354 chr2R 13431493 13431513 chr2R 13431572 13431592 4 79 2.0 0.5 1.2 1.8 99 chr2R 13431493 intron CG42321 - chr2R 13431542 intron CG42321 - chr2R 13431592 intron CG42321 - chr2R_4_13430001 chr2R_13430001 RAL-861 355 chr2R 13580515 13580525 chr2R 13580865 13580874 jockey 5 349 0.0 5.5 2.8 1.3 359 chr2R 13580515 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580874 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_5_13580001 chr2R_13580001 RAL-861 356 chr2R 13590000 13590025 chr2R 13590100 13590129 15 101 18.0 20.5 19.2 0.7 129 chr2R 13590000 intron,intron CG6191 -,CG45088 - chr2R 13590064 intron,intron CG6191 -,CG45088 - chr2R 13590129 intron,intron CG6191 -,CG45088 - chr2R_15_13590001 chr2R_13590001 RAL-861 357 chr2R 13799434 13799455 chr2R 13799520 13799540 5 83 2.0 2.0 2.0 1.7 106 chr2R 13799434 intron Cpr50Cb + chr2R 13799487 intron Cpr50Cb + chr2R 13799540 intron Cpr50Cb + chr2R_5_13795001 chr2R_13795001 RAL-861 358 chr2R 13905605 13905631 chr2R 13907585 13907606 Rt1a 5 1977 4.5 3.0 3.8 1.0 2001 chr2R 13905605 intron shot - chr2R 13906606 intron shot - chr2R 13907606 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-861 359 chr2R 13925871 13925879 chr2R 13926025 13926033 4 154 2.5 0.5 1.5 1.6 162 chr2R 13925871 intron shot - chr2R 13925952 intron shot - chr2R 13926033 intron shot - chr2R_4_13925001 chr2R_13925001 RAL-861 360 chr2R 14284926 14284946 chr2R 14285333 14285336 4 402 2.0 0.0 1.0 2.0 410 chr2R 14284926 intron Ih + chr2R 14285131 intron Ih + chr2R 14285336 intron Ih + chr2R_4_14285001 chr2R_14285001 RAL-861 361 chr2R 14381057 14381081 chr2R 14381382 14381406 8 325 1.0 3.5 2.2 2.5 349 chr2R 14381057 intron Dh44-R1 + chr2R 14381232 intron Dh44-R1 + chr2R 14381406 intron Dh44-R1 + chr2R_8_14380001 chr2R_14380001 RAL-861 362 chr2R 14393876 14393899 chr2R 14393959 14393983 6 84 2.5 4.0 3.2 1.4 107 chr2R 14393876 intergenic not near genes chr2R 14393930 intergenic not near genes chr2R 14393983 intergenic not near genes chr2R_6_14390001 chr2R_14390001 RAL-861 363 chr2R 14394234 14394247 chr2R 14399023 14399036 Doc 5 4789 3.5 1.0 2.2 1.6 4802 chr2R 14394234 intergenic not near genes chr2R 14396635 intergenic not near genes chr2R 14399036 intergenic not near genes chr2R_5_14395001 chr2R_14395001 RAL-861 364 chr2R 14820908 14820928 chr2R 14820993 14821015 4 86 2.0 5.0 3.5 0.9 107 chr2R 14820908 intergenic not near genes chr2R 14820962 intergenic not near genes chr2R 14821015 intergenic not near genes chr2R_4_14820001 chr2R_14820001 RAL-861 365 chr2R 14873702 14873717 chr2R 14875206 14875214 5 1507 2.5 0.5 1.5 2.0 1512 chr2R 14873702 intergenic Cyp6a22 +,Cyp6a17 + chr2R 14874458 exon Cyp6a17 + chr2R 14875214 exon Cyp6a17 + chr2R_5_14870001 chr2R_14870001 RAL-861 366 chr2R 14917242 14917269 chr2R 14917331 14917340 6 87 1.5 1.5 1.5 2.4 98 chr2R 14917242 intron CG10249 - chr2R 14917291 intron CG10249 - chr2R 14917340 intron CG10249 - chr2R_6_14915001 chr2R_14915001 RAL-861 367 chr2R 15004734 15004759 chr2R 15005057 15005088 jockey 5 324 1.0 2.5 1.8 1.8 354 chr2R 15004734 intergenic not near genes chr2R 15004911 intergenic not near genes chr2R 15005088 intergenic not near genes chr2R_5_15000001 chr2R_15000001 RAL-861 368 chr2R 15015455 15015485 chr2R 15022879 15022908 mdg1 12 7422 5.5 1.5 3.5 2.7 7453 chr2R 15015455 intron hbs + chr2R 15019182 intron hbs + chr2R 15022908 intron hbs + chr2R_12_15015001 chr2R_15015001 RAL-861 369 chr2R 15084984 15085012 chr2R 15092032 15092040 297 6 7045 1.0 2.0 1.5 2.4 7056 chr2R 15084984 intergenic not near genes chr2R 15088512 intergenic not near genes chr2R 15092040 5` UTR CR44457 + chr2R_6_15085001 chr2R_15085001 RAL-861 370 chr2R 15119318 15119340 chr2R 15127797 15127820 Tirant 4 8480 6.0 4.0 5.0 0.7 8502 chr2R 15119318 intron chn + chr2R 15123569 intron chn + chr2R 15127820 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-861 371 chr2R 15137971 15137983 chr2R 15138051 15138056 4 78 4.0 0.0 2.0 1.3 85 chr2R 15137971 intron chn + chr2R 15138014 intron chn + chr2R 15138056 intron chn + chr2R_4_15135001 chr2R_15135001 RAL-861 372 chr2R 15295710 15295736 chr2R 15295835 15295861 12 122 3.5 2.0 2.8 3.2 151 chr2R 15295710 intron Trpm - chr2R 15295786 intron Trpm - chr2R 15295861 intron Trpm - chr2R_12_15295001 chr2R_15295001 RAL-861 373 chr2R 15408480 15408496 chr2R 15408573 15408597 6 96 1.5 5.0 3.2 1.4 117 chr2R 15408480 intron CG43729 + chr2R 15408538 intron CG43729 + chr2R 15408597 intron CG43729 + chr2R_6_15405001 chr2R_15405001 RAL-861 374 chr2R 15648906 15648917 chr2R 15648985 15649010 5 95 2.0 1.5 1.8 1.8 104 chr2R 15648906 intron CG42524 + chr2R 15648958 intron CG42524 + chr2R 15649010 intron CG42524 + chr2R_5_15645001 chr2R_15645001 RAL-861 375 chr2R 15833522 15833558 chr2R 15833609 15833628 9 84 1.5 4.0 2.8 2.4 106 chr2R 15833522 intron,intron tun +,Poxn - chr2R 15833575 intron,intron tun +,Poxn - chr2R 15833628 intron,intron tun +,Poxn - chr2R_9_15830001 chr2R_15830001 RAL-861 376 chr2R 16039375 16039401 chr2R 16039458 16039484 6 80 2.0 2.5 2.2 1.9 109 chr2R 16039375 intron SP2353 + chr2R 16039430 intron SP2353 + chr2R 16039484 intron SP2353 + chr2R_6_16035001 chr2R_16035001 RAL-861 377 chr2R 16380125 16380153 chr2R 16380223 16380251 6 98 2.0 0.0 1.0 3.0 126 chr2R 16380125 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380188 3` UTR CR45317 - chr2R 16380251 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_6_16380001 chr2R_16380001 RAL-861 378 chr2R 16442895 16442903 chr2R 16442976 16442984 5 81 0.5 1.5 1.0 2.5 89 chr2R 16442895 intergenic CG4409 + chr2R 16442940 intergenic CG4409 + chr2R 16442984 intergenic CG4409 + chr2R_5_16440001 chr2R_16440001 RAL-861 379 chr2R 16617066 16617088 chr2R 16617139 16617167 6 78 2.0 0.5 1.2 2.7 101 chr2R 16617066 intron CG5065 + chr2R 16617116 intron CG5065 + chr2R 16617167 intron CG5065 + chr2R_6_16615001 chr2R_16615001 RAL-861 380 chr2R 16681306 16681321 chr2R 16681382 16681397 6 76 4.5 0.0 2.2 1.9 91 chr2R 16681306 intron CG30463 - chr2R 16681352 intron CG30463 - chr2R 16681397 intron CG30463 - chr2R_6_16680001 chr2R_16680001 RAL-861 381 chr2R 16683945 16683954 chr2R 16684288 16684305 5 353 4.0 2.0 3.0 1.2 360 chr2R 16683945 intron CG30463 - chr2R 16684125 intron CG30463 - chr2R 16684305 intron CG30463 - chr2R_5_16680001 chr2R_16680001 RAL-861 382 chr2R 16684508 16684528 chr2R 16686041 16686061 4 1533 18.5 7.5 13.0 0.3 1553 chr2R 16684508 intron CG30463 - chr2R 16685284 intron CG30463 - chr2R 16686061 intron CG30463 - chr2R_4_16685001 chr2R_16685001 RAL-861 383 chr2R 16702002 16702028 chr2R 16702089 16702098 4 82 4.0 1.0 2.5 1.1 96 chr2R 16702002 intron CG30463 - chr2R 16702050 intron CG30463 - chr2R 16702098 intron CG30463 - chr2R_4_16700001 chr2R_16700001 RAL-861 384 chr2R 16737139 16737166 chr2R 16737236 16737266 9 97 4.0 7.5 5.8 1.3 127 chr2R 16737139 3` UTR CG43104 - chr2R 16737202 3` UTR CG43104 - chr2R 16737266 exon CG43104 - chr2R_9_16735001 chr2R_16735001 RAL-861 385 chr2R 16914586 16914597 chr2R 16914672 16914678 4 84 4.5 1.5 3.0 1.0 92 chr2R 16914586 intergenic not near genes chr2R 16914632 intergenic not near genes chr2R 16914678 intergenic not near genes chr2R_4_16910001 chr2R_16910001 RAL-861 386 chr2R 17147256 17147269 chr2R 17152267 17152283 jockey 4 5019 2.5 4.0 3.2 1.0 5027 chr2R 17147256 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152283 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-861 387 chr2R 17236506 17236536 chr2R 17241710 17241740 copia 7 5201 1.0 2.0 1.5 2.8 5234 chr2R 17236506 intron mbl + chr2R 17239123 intron mbl + chr2R 17241740 intron mbl + chr2R_7_17235001 chr2R_17235001 RAL-861 388 chr2R 17522105 17522136 chr2R 17522182 17522215 11 80 14.5 10.5 12.5 0.8 110 chr2R 17522105 intron Patronin - chr2R 17522160 intron Patronin - chr2R 17522215 intron Patronin - chr2R_11_17520001 chr2R_17520001 RAL-861 389 chr2R 17627753 17627783 chr2R 17628075 17628110 7 323 2.0 4.0 3.0 1.8 357 chr2R 17627753 intron CG10936 - chr2R 17627932 intron CG10936 - chr2R 17628110 intron CG10936 - chr2R_7_17625001 chr2R_17625001 RAL-861 390 chr2R 17793797 17793825 chr2R 17793956 17793981 10 158 0.5 2.0 1.2 4.5 184 chr2R 17793797 5` UTR Dhit + chr2R 17793889 5` UTR Dhit + chr2R 17793981 5` UTR Dhit + chr2R_10_17790001 chr2R_17790001 RAL-861 391 chr2R 17835036 17835063 chr2R 17835128 17835156 6 91 2.5 4.0 3.2 1.4 120 chr2R 17835036 intron grh + chr2R 17835096 intron grh + chr2R 17835156 intron grh + chr2R_6_17835001 chr2R_17835001 RAL-861 392 chr2R 17852923 17852950 chr2R 17853014 17853040 4 86 4.0 1.0 2.5 1.1 117 chr2R 17852923 intron olf186-F + chr2R 17852982 intron olf186-F + chr2R 17853040 intron olf186-F + chr2R_4_17850001 chr2R_17850001 RAL-861 393 chr2R 17918166 17918192 chr2R 17918243 17918268 4 75 2.5 2.0 2.2 1.2 102 chr2R 17918166 intron Elk + chr2R 17918217 intron Elk + chr2R 17918268 intron Elk + chr2R_4_17915001 chr2R_17915001 RAL-861 394 chr2R 17961463 17961484 chr2R 17961743 17961771 5 282 1.0 3.0 2.0 1.7 308 chr2R 17961463 intergenic not near genes chr2R 17961617 intergenic not near genes chr2R 17961771 intergenic not near genes chr2R_5_17960001 chr2R_17960001 RAL-861 395 chr2R 18308285 18308319 chr2R 18308391 18308418 5 103 3.0 4.0 3.5 1.1 133 chr2R 18308285 intron sbb - chr2R 18308352 intron sbb - chr2R 18308418 intron sbb - chr2R_5_18305001 chr2R_18305001 RAL-861 396 chr2R 18408285 18408304 chr2R 18408406 18408421 10 118 9.5 6.5 8.0 1.1 136 chr2R 18408285 exon GstE8 + chr2R 18408353 exon GstE8 + chr2R 18408421 exon GstE8 + chr2R_10_18405001 chr2R_18405001 RAL-861 397 chr2R 18455831 18455858 chr2R 18456122 18456149 10 289 4.0 4.5 4.2 1.9 318 chr2R 18455831 intergenic not near genes chr2R 18455990 intergenic not near genes chr2R 18456149 intergenic CG30116 - chr2R_10_18455001 chr2R_18455001 RAL-861 398 chr2R 18486846 18486872 chr2R 18487108 18487114 7 258 2.5 3.0 2.8 1.8 268 chr2R 18486846 intron CG30116 - chr2R 18486980 intron CG30116 - chr2R 18487114 intron CG30116 - chr2R_7_18485001 chr2R_18485001 RAL-861 399 chr2R 18575800 18575831 chr2R 18581987 18582019 3S18 7 6186 2.0 3.5 2.8 1.8 6219 chr2R 18575800 intron GEFmeso - chr2R 18578910 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-861 400 chr2R 18590869 18590890 chr2R 18600017 18600040 roo 6 9150 4.0 3.5 3.8 1.2 9171 chr2R 18590869 intron GEFmeso - chr2R 18595454 intron GEFmeso - chr2R 18600040 intron GEFmeso - chr2R_6_18595001 chr2R_18595001 RAL-861 401 chr2R 18692906 18692917 chr2R 18692989 18693004 5 85 2.5 1.5 2.0 1.7 98 chr2R 18692906 intron Sik3 + chr2R 18692955 intron Sik3 + chr2R 18693004 intron Sik3 + chr2R_5_18690001 chr2R_18690001 RAL-861 402 chr2R 18713240 18713271 chr2R 18713315 18713338 6 74 3.0 1.5 2.2 1.9 98 chr2R 18713240 intergenic not near genes chr2R 18713289 intergenic not near genes chr2R 18713338 intergenic not near genes chr2R_6_18710001 chr2R_18710001 RAL-861 403 chr2R 19012938 19012969 chr2R 19013032 19013055 7 86 3.0 4.5 3.8 1.5 117 chr2R 19012938 intergenic not near genes chr2R 19012996 intergenic not near genes chr2R 19013055 intergenic not near genes chr2R_7_19010001 chr2R_19010001 RAL-861 404 chr2R 19203318 19203318 chr2R 19203741 19203751 5 423 13.0 24.5 18.8 0.3 433 chr2R 19203318 intron hppy + chr2R 19203534 intron hppy + chr2R 19203751 intron hppy + chr2R_5_19200001 chr2R_19200001 RAL-861 405 chr2R 19542276 19542286 chr2R 19542364 19542374 5 87 0.5 5.5 3.0 1.2 98 chr2R 19542276 intron sm - chr2R 19542325 intron sm - chr2R 19542374 intron sm - chr2R_5_19540001 chr2R_19540001 RAL-861 406 chr2R 19542289 19542299 chr2R 19542357 19542385 6 78 0.5 4.0 2.2 1.9 96 chr2R 19542289 intron sm - chr2R 19542337 intron sm - chr2R 19542385 intron sm - chr2R_6_19540001 chr2R_19540001 RAL-861 407 chr2R 19776597 19776626 chr2R 19779920 19779949 jockey 6 3320 2.0 3.0 2.5 1.7 3352 chr2R 19776597 intergenic not near genes chr2R 19778273 intergenic not near genes chr2R 19779949 intergenic not near genes chr2R_6_19775001 chr2R_19775001 RAL-861 408 chr2R 19909470 19909506 chr2R 19909549 19909567 13 74 4.0 3.5 3.8 2.7 97 chr2R 19909470 intergenic CR44573 - chr2R 19909518 intergenic CR44573 - chr2R 19909567 intergenic CR44573 - chr2R_13_19905001 chr2R_19905001 RAL-861 409 chr2R 19957428 19957448 chr2R 19962630 19962632 copia 6 5197 4.5 2.5 3.5 1.3 5204 chr2R 19957428 intergenic CG44623 + chr2R 19960030 intergenic not near genes chr2R 19962632 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-861 410 chr2R 20326759 20326791 chr2R 20326836 20326844 8 72 4.5 1.5 3.0 2.0 85 chr2R 20326759 5` UTR MED8 - chr2R 20326802 5` UTR MED8 - chr2R 20326844 intergenic MED8 -,CG8929 + chr2R_8_20325001 chr2R_20325001 RAL-861 411 chr2R 20410711 20410731 chr2R 20410794 20410813 7 80 3.0 2.0 2.5 2.0 102 chr2R 20410711 intergenic not near genes chr2R 20410762 intergenic not near genes chr2R 20410813 intergenic not near genes chr2R_7_20410001 chr2R_20410001 RAL-861 412 chr2R 20441056 20441076 chr2R 20441143 20441163 4 87 4.5 3.0 3.8 0.8 107 chr2R 20441056 intron CG12484 + chr2R 20441110 intron CG12484 + chr2R 20441163 intron CG12484 + chr2R_4_20440001 chr2R_20440001 RAL-861 413 chr2R 20523050 20523066 chr2R 20523152 20523163 11 107 3.5 3.5 3.5 2.4 113 chr2R 20523050 intergenic not near genes chr2R 20523106 intergenic not near genes chr2R 20523163 intergenic not near genes chr2R_11_20520001 chr2R_20520001 RAL-861 414 chr2R 20783317 20783333 chr2R 20788089 20788103 F-element 5 4769 0.5 2.0 1.2 2.3 4786 chr2R 20783317 intergenic not near genes chr2R 20785710 intergenic not near genes chr2R 20788103 intergenic CG43666 - chr2R_5_20785001 chr2R_20785001 RAL-861 415 chr2R 20812244 20812274 chr2R 20812323 20812353 8 79 4.5 3.0 3.8 1.7 109 chr2R 20812244 intergenic not near genes chr2R 20812298 intergenic not near genes chr2R 20812353 intergenic not near genes chr2R_8_20810001 chr2R_20810001 RAL-861 416 chr2R 20838058 20838084 chr2R 20838139 20838165 4 81 0.0 2.5 1.2 1.8 107 chr2R 20838058 intron CR44667 + chr2R 20838112 intron CR44667 + chr2R 20838165 intron CR44667 + chr2R_4_20835001 chr2R_20835001 RAL-861 417 chr2R 20848935 20848960 chr2R 20849021 20849046 5 82 2.5 2.5 2.5 1.4 111 chr2R 20848935 exon CG17999 - chr2R 20848990 intron CG17999 - chr2R 20849046 intron CG17999 - chr2R_5_20845001 chr2R_20845001 RAL-861 418 chr2R 21056684 21056695 chr2R 21056765 21056776 4 79 6.5 3.0 4.8 0.7 92 chr2R 21056684 5` UTR shg - chr2R 21056730 5` UTR shg - chr2R 21056776 5` UTR shg - chr2R_4_21055001 chr2R_21055001 RAL-861 419 chr2R 21056709 21056717 chr2R 21056764 21056798 5 71 4.5 2.5 3.5 1.1 89 chr2R 21056709 5` UTR shg - chr2R 21056754 5` UTR shg - chr2R 21056798 5` UTR shg - chr2R_5_21055001 chr2R_21055001 RAL-861 420 chr2R 21642013 21642029 chr2R 21642082 21642099 4 74 1.5 3.5 2.5 1.1 86 chr2R 21642013 intergenic not near genes chr2R 21642056 intergenic not near genes chr2R 21642099 intergenic not near genes chr2R_4_21640001 chr2R_21640001 RAL-861 421 chr2R 21660544 21660561 chr2R 21660677 21660694 6 131 7.5 1.5 4.5 1.1 150 chr2R 21660544 intergenic pirk - chr2R 21660619 intergenic pirk - chr2R 21660694 intergenic pirk - chr2R_6_21660001 chr2R_21660001 RAL-861 422 chr2R 21809531 21809558 chr2R 21817771 21817798 roo 6 8237 1.5 4.0 2.8 1.6 8267 chr2R 21809531 intergenic not near genes chr2R 21813664 intergenic not near genes chr2R 21817798 intergenic not near genes chr2R_6_21810001 chr2R_21810001 RAL-861 423 chr2R 21880605 21880627 chr2R 21880703 21880726 10 98 2.0 3.0 2.5 2.9 121 chr2R 21880605 intron Fili + chr2R 21880666 intron Fili + chr2R 21880726 intron Fili + chr2R_10_21880001 chr2R_21880001 RAL-861 424 chr2R 21919876 21919907 chr2R 21919961 21919995 7 85 1.5 1.0 1.2 3.2 119 chr2R 21919876 intron Fili + chr2R 21919936 intron Fili + chr2R 21919995 intron Fili + chr2R_7_21915001 chr2R_21915001 RAL-861 425 chr2R 21932272 21932280 chr2R 21932335 21932358 6 74 3.0 4.5 3.8 1.2 86 chr2R 21932272 intron Fili + chr2R 21932315 intron Fili + chr2R 21932358 intron Fili + chr2R_6_21930001 chr2R_21930001 RAL-861 426 chr2R 22003096 22003108 chr2R 22003181 22003190 5 83 3.0 2.5 2.8 1.3 94 chr2R 22003096 intron CG34370 - chr2R 22003143 intron CG34370 - chr2R 22003190 intron CG34370 - chr2R_5_22000001 chr2R_22000001 RAL-861 427 chr2R 22033828 22033860 chr2R 22033913 22033939 6 84 0.0 5.5 2.8 1.6 111 chr2R 22033828 intron CG34370 - chr2R 22033884 intron CG34370 - chr2R 22033939 intron CG34370 - chr2R_6_22030001 chr2R_22030001 RAL-861 428 chr2R 22189451 22189476 chr2R 22189578 22189596 6 122 2.5 3.0 2.8 1.6 145 chr2R 22189451 3` UTR Vps35 + chr2R 22189524 3` UTR Vps35 + chr2R 22189596 3` UTR Vps35 + chr2R_6_22185001 chr2R_22185001 RAL-861 429 chr2R 22349708 22349726 chr2R 22351472 22351503 jockey 6 1776 1.5 3.0 2.2 1.9 1795 chr2R 22349708 intron Liprin-gamma - chr2R 22350606 intron Liprin-gamma - chr2R 22351503 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-861 430 chr2R 22360381 22360406 chr2R 22360813 22360819 jockey 5 426 2.0 1.0 1.5 2.0 438 chr2R 22360381 intron Liprin-gamma - chr2R 22360600 intron Liprin-gamma - chr2R 22360819 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-861 431 chr2R 22370154 22370187 chr2R 22370277 22370310 7 127 21.5 15.5 18.5 0.4 156 chr2R 22370154 intron Liprin-gamma - chr2R 22370232 intron Liprin-gamma - chr2R 22370310 intron Liprin-gamma - chr2R_7_22370001 chr2R_22370001 RAL-861 432 chr2R 22525762 22525774 chr2R 22529317 22529329 jockey 6 3554 1.5 2.5 2.0 2.0 3567 chr2R 22525762 intron px - chr2R 22527546 intron px - chr2R 22529329 intron px - chr2R_6_22525001 chr2R_22525001 RAL-861 433 chr2R 22594763 22594776 chr2R 22650679 22650679 4 55911 5.5 18.0 11.8 0.3 55916 chr2R 22594763 exon CG3927 + chr2R 22622721 intron CG33143 + chr2R 22650679 exon nsr + chr2R_4_22620001 chr2R_22620001 RAL-861 434 chr2R 22623458 22623482 chr2R 22623598 22623622 6 135 4.5 7.5 6.0 0.9 164 chr2R 22623458 intron CG33143 + chr2R 22623540 intron CG33143 + chr2R 22623622 intron CG33143 + chr2R_6_22620001 chr2R_22620001 RAL-861 435 chr2R 22679745 22679785 chr2R 22679822 22679859 18 70 3.0 2.5 2.8 4.7 114 chr2R 22679745 intergenic not near genes chr2R 22679802 intergenic not near genes chr2R 22679859 intergenic not near genes chr2R_18_22675001 chr2R_22675001 RAL-861 436 chr2R 22774206 22774230 chr2R 22774509 22774537 9 305 2.5 2.5 2.5 2.6 331 chr2R 22774206 intron CG42260 - chr2R 22774372 intron CG42260 - chr2R 22774537 intron CG42260 - chr2R_9_22770001 chr2R_22770001 RAL-861 437 chr2R 22774970 22774996 chr2R 22775389 22775397 jockey 9 417 7.0 3.5 5.2 1.5 427 chr2R 22774970 intron CG42260 - chr2R 22775184 intron CG42260 - chr2R 22775397 intron CG42260 - chr2R_9_22775001 chr2R_22775001 RAL-861 438 chr2R 22907423 22907434 chr2R 22907495 22907527 4 78 2.5 3.5 3.0 1.0 104 chr2R 22907423 intron nahoda + chr2R 22907475 intron nahoda + chr2R 22907527 intron nahoda + chr2R_4_22905001 chr2R_22905001 RAL-861 439 chr2R 22941820 22941855 chr2R 22941899 22941934 5 78 0.0 0.5 0.2 4.2 114 chr2R 22941820 intergenic CG42694 + chr2R 22941877 5` UTR CG42694 + chr2R 22941934 5` UTR CG42694 + chr2R_5_22940001 chr2R_22940001 RAL-861 440 chr2R 22952432 22952465 chr2R 22952612 22952618 8 176 6.0 2.5 4.2 1.5 186 chr2R 22952432 intron CR32835 - chr2R 22952525 intron CR32835 - chr2R 22952618 intron CR32835 - chr2R_8_22950001 chr2R_22950001 RAL-861 441 chr2R 23155716 23155739 chr2R 23155842 23155865 6 126 3.0 0.5 1.8 2.1 149 chr2R 23155716 intron CG9899 + chr2R 23155790 intron CG9899 + chr2R 23155865 intron CG9899 + chr2R_6_23155001 chr2R_23155001 RAL-861 442 chr2R 23186585 23186594 chr2R 23186655 23186671 4 75 0.5 2.0 1.2 1.8 86 chr2R 23186585 intron CG34371 - chr2R 23186628 intron CG34371 - chr2R 23186671 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-861 443 chr2R 23348810 23348817 chr2R 23348890 23348897 4 80 4.0 4.5 4.2 0.8 87 chr2R 23348810 intergenic not near genes chr2R 23348854 intergenic not near genes chr2R 23348897 intergenic not near genes chr2R_4_23345001 chr2R_23345001 RAL-861 444 chr2R 23351936 23351942 chr2R 23352022 23352028 4 86 2.5 4.0 3.2 1.0 92 chr2R 23351936 exon CG34210 + chr2R 23351982 3` UTR CG34210 + chr2R 23352028 3` UTR CG34210 + chr2R_4_23350001 chr2R_23350001 RAL-861 445 chr2R 23402611 23402633 chr2R 23407687 23407700 flea 6 5074 5.0 5.0 5.0 1.0 5089 chr2R 23402611 intergenic CG3520 - chr2R 23405156 intergenic not near genes chr2R 23407700 intergenic not near genes chr2R_6_23405001 chr2R_23405001 RAL-861 446 chr2R 23410104 23410115 chr2R 23410570 23410590 5 472 4.0 0.5 2.2 1.6 486 chr2R 23410104 intergenic not near genes chr2R 23410347 intergenic not near genes chr2R 23410590 intergenic not near genes chr2R_5_23410001 chr2R_23410001 RAL-861 447 chr2R 23402542 23402562 chr2R 23413980 23414001 4 11438 6.5 19.5 13.0 0.3 11459 chr2R 23402542 intergenic CG3520 - chr2R 23408272 intergenic not near genes chr2R 23414001 intron CG9812 - chr2R_4_23405001 chr2R_23405001 RAL-861 448 chr2R 23487451 23487474 chr2R 23487533 23487555 7 81 2.0 3.5 2.8 1.8 104 chr2R 23487451 intron CG43795 + chr2R 23487503 intron CG43795 + chr2R 23487555 intron CG43795 + chr2R_7_23485001 chr2R_23485001 RAL-861 449 chr2R 23567026 23567048 chr2R 23567111 23567140 8 91 3.5 3.5 3.5 1.8 114 chr2R 23567026 intron apt + chr2R 23567083 intron apt + chr2R 23567140 intron apt + chr2R_8_23565001 chr2R_23565001 RAL-861 450 chr2R 23641615 23641639 chr2R 23641763 23641788 8 146 1.0 1.0 1.0 4.0 173 chr2R 23641615 intron retn + chr2R 23641702 intron retn + chr2R 23641788 intron retn + chr2R_8_23640001 chr2R_23640001 RAL-861 451 chr2R 23713889 23713917 chr2R 23713982 23713985 7 87 1.0 4.0 2.5 2.0 96 chr2R 23713889 intergenic Sesn + chr2R 23713937 5` UTR Sesn + chr2R 23713985 5` UTR Sesn + chr2R_7_23710001 chr2R_23710001 RAL-861 452 chr2R 23744764 23744794 chr2R 23744843 23744873 9 78 2.5 4.0 3.2 2.1 109 chr2R 23744764 intron egl - chr2R 23744818 intron egl - chr2R 23744873 intron egl - chr2R_9_23740001 chr2R_23740001 RAL-861 453 chr2R 23986534 23986548 chr2R 23986596 23986628 4 75 1.0 0.5 0.8 2.2 94 chr2R 23986534 intron Phm - chr2R 23986581 intron Phm - chr2R 23986628 intron,5` UTR Phm -,CG30178 + chr2R_4_23985001 chr2R_23985001 RAL-861 454 chr2R 24031394 24031412 chr2R 24031471 24031479 4 78 2.0 2.0 2.0 1.3 85 chr2R 24031394 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031479 intergenic CG30172 -,Chi - chr2R_4_24030001 chr2R_24030001 RAL-861 455 chr2R 24166908 24166932 chr2R 24166994 24167008 7 85 0.0 3.0 1.5 2.8 100 chr2R 24166908 intron CG3328 + chr2R 24166958 intron CG3328 + chr2R 24167008 intron CG3328 + chr2R_7_24165001 chr2R_24165001 RAL-861 456 chr2R 24278322 24278361 chr2R 24278406 24278426 9 79 0.5 5.0 2.8 2.4 104 chr2R 24278322 intron nvy + chr2R 24278374 intron nvy + chr2R 24278426 intron nvy + chr2R_9_24275001 chr2R_24275001 RAL-861 457 chr2R 24291946 24291973 chr2R 24292078 24292106 5 133 3.0 2.0 2.5 1.4 160 chr2R 24291946 intergenic not near genes chr2R 24292026 intergenic not near genes chr2R 24292106 intergenic not near genes chr2R_5_24290001 chr2R_24290001 RAL-861 458 chr2R 24353445 24353460 chr2R 24361794 24361803 roo 6 8352 2.0 2.0 2.0 2.0 8358 chr2R 24353445 intron,intron bs +,CR44811 - chr2R 24357624 intron,intron bs +,CR44811 - chr2R 24361803 intron,intron bs +,CR44811 - chr2R_6_24355001 chr2R_24355001 RAL-861 459 chr2R 24553645 24553666 chr2R 24553728 24553760 12 83 2.5 2.5 2.5 3.4 115 chr2R 24553645 intron,intron CG4622 -,ITP + chr2R 24553702 intron,intron CG4622 -,ITP + chr2R 24553760 intron,intron CG4622 -,ITP + chr2R_12_24550001 chr2R_24550001 RAL-861 460 chr2R 24719799 24719826 chr2R 24719908 24719938 13 109 3.0 7.0 5.0 2.2 139 chr2R 24719799 intron Mid1 - chr2R 24719868 intron Mid1 - chr2R 24719938 intron Mid1 - chr2R_13_24715001 chr2R_24715001 RAL-861 461 chr2R 24727883 24727914 chr2R 24735391 24735422 mdg1 10 7507 1.0 2.5 1.8 3.6 7539 chr2R 24727883 intron Mid1 - chr2R 24731652 intron Mid1 - chr2R 24735422 intron Mid1 - chr2R_10_24730001 chr2R_24730001 RAL-861 462 chr2R 24763608 24763644 chr2R 24765584 24765620 G2 10 1970 2.5 6.0 4.2 1.9 2012 chr2R 24763608 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765620 exon CG3894 + chr2R_10_24760001 chr2R_24760001 RAL-861 463 chr2R 24798409 24798416 chr2R 24798739 24798749 5 332 6.0 4.5 5.2 0.8 340 chr2R 24798409 intron CG12849 + chr2R 24798579 exon CG12849 + chr2R 24798749 intergenic CG3611 +,CG12849 + chr2R_5_24795001 chr2R_24795001 RAL-861 464 chr2R 24859843 24859867 chr2R 24859929 24859934 5 81 1.0 0.5 0.8 2.8 91 chr2R 24859843 5` UTR CR44829 + chr2R 24859888 5` UTR CR44829 + chr2R 24859934 5` UTR CR44829 + chr2R_5_24855001 chr2R_24855001 RAL-861 465 chr2R 24884053 24884078 chr2R 24884135 24884159 6 80 1.5 0.5 1.0 3.0 106 chr2R 24884053 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884159 intron NKAIN + chr2R_6_24880001 chr2R_24880001 RAL-861 466 chr2R 25014542 25014575 chr2R 25014618 25014628 9 70 3.0 5.0 4.0 1.8 86 chr2R 25014542 intron uzip + chr2R 25014585 intron uzip + chr2R 25014628 intron uzip + chr2R_9_25010001 chr2R_25010001 RAL-861 467 chr2R 25018345 25018373 chr2R 25018440 25018474 8 99 2.5 1.0 1.8 2.9 129 chr2R 25018345 intron uzip + chr2R 25018410 intron uzip + chr2R 25018474 intron uzip + chr2R_8_25015001 chr2R_25015001 RAL-861 468 chr2R 25022643 25022673 chr2R 25022727 25022757 5 81 0.5 1.5 1.0 2.5 114 chr2R 25022643 intron uzip + chr2R 25022700 intron uzip + chr2R 25022757 intron uzip + chr2R_5_25020001 chr2R_25020001 RAL-861 469 chr3L 106005 106026 chr3L 106134 106155 4 124 2.5 2.0 2.2 1.2 150 chr3L 106005 intergenic not near genes chr3L 106080 intergenic not near genes chr3L 106155 intergenic not near genes chr3L_4_105001 chr3L_105001 RAL-861 470 chr3L 110215 110236 chr3L 119382 119403 roo 4 9159 2.0 3.5 2.8 1.1 9188 chr3L 110215 intergenic not near genes chr3L 114809 intergenic not near genes chr3L 119403 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-861 471 chr3L 165678 165709 chr3L 165816 165845 9 137 1.0 3.5 2.2 2.8 167 chr3L 165678 intron p130CAS + chr3L 165762 intron p130CAS + chr3L 165845 intron p130CAS + chr3L_9_165001 chr3L_165001 RAL-861 472 chr3L 390956 390986 chr3L 391061 391092 9 103 3.0 2.0 2.5 2.6 136 chr3L 390956 intron trh - chr3L 391024 intron trh - chr3L 391092 intron trh - chr3L_9_390001 chr3L_390001 RAL-861 473 chr3L 402693 402702 chr3L 409746 409755 297 4 7052 8.5 3.0 5.8 0.6 7062 chr3L 402693 intergenic not near genes chr3L 406224 intergenic not near genes chr3L 409755 intergenic not near genes chr3L_4_405001 chr3L_405001 RAL-861 474 chr3L 563969 564000 chr3L 564148 564176 8 178 3.0 4.0 3.5 1.8 207 chr3L 563969 intron hipk + chr3L 564072 intron hipk + chr3L 564176 intron hipk + chr3L_8_560001 chr3L_560001 RAL-861 475 chr3L 843720 843747 chr3L 843801 843819 4 78 3.5 0.0 1.8 1.4 99 chr3L 843720 intergenic Gr61a +,CG13889 + chr3L 843770 intergenic Gr61a +,CG13889 + chr3L 843819 intergenic CG13889 +,Gr61a + chr3L_4_840001 chr3L_840001 RAL-861 476 chr3L 858010 858032 chr3L 866481 866507 Tirant 6 8470 1.0 4.0 2.5 1.7 8497 chr3L 858010 intergenic not near genes chr3L 862258 intergenic not near genes chr3L 866507 5` UTR CG12502 + chr3L_6_860001 chr3L_860001 RAL-861 477 chr3L 899994 900012 chr3L 900074 900094 4 82 0.0 1.5 0.8 2.2 100 chr3L 899994 intergenic not near genes chr3L 900044 intergenic not near genes chr3L 900094 intergenic not near genes chr3L_4_900001 chr3L_900001 RAL-861 478 chr3L 925176 925208 chr3L 932602 932632 mdg1 9 7426 2.0 2.5 2.2 2.8 7456 chr3L 925176 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932632 intron Glut1 + chr3L_9_925001 chr3L_925001 RAL-861 479 chr3L 933889 933905 chr3L 934019 934037 4 132 0.0 3.0 1.5 1.6 148 chr3L 933889 intron Glut1 + chr3L 933963 intron Glut1 + chr3L 934037 intron Glut1 + chr3L_4_930001 chr3L_930001 RAL-861 480 chr3L 939784 939795 chr3L 940891 940908 jockey 6 1116 5.5 5.0 5.2 1.0 1124 chr3L 939784 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940908 intron Glut1 + chr3L_6_940001 chr3L_940001 RAL-861 481 chr3L 1003055 1003068 chr3L 1003132 1003145 5 77 5.0 3.5 4.2 1.0 90 chr3L 1003055 intron trio - chr3L 1003100 intron trio - chr3L 1003145 intron trio - chr3L_5_1000001 chr3L_1000001 RAL-861 482 chr3L 1015137 1015169 chr3L 1015225 1015255 7 86 2.5 1.5 2.0 2.3 118 chr3L 1015137 intron trio - chr3L 1015196 intron trio - chr3L 1015255 intron trio - chr3L_7_1015001 chr3L_1015001 RAL-861 483 chr3L 1040554 1040581 chr3L 1040636 1040660 6 80 1.5 2.0 1.8 2.1 106 chr3L 1040554 intron bab1 - chr3L 1040607 intron bab1 - chr3L 1040660 intron bab1 - chr3L_6_1040001 chr3L_1040001 RAL-861 484 chr3L 1109639 1109667 chr3L 1109726 1109753 5 87 1.0 3.0 2.0 1.7 114 chr3L 1109639 intergenic not near genes chr3L 1109696 intergenic not near genes chr3L 1109753 intergenic not near genes chr3L_5_1105001 chr3L_1105001 RAL-861 485 chr3L 1219595 1219625 chr3L 1227328 1227358 412 14 7731 1.5 2.0 1.8 5.0 7763 chr3L 1219595 intron mwh + chr3L 1223476 intron mwh + chr3L 1227358 intron mwh + chr3L_14_1220001 chr3L_1220001 RAL-861 486 chr3L 1415778 1415807 chr3L 1415860 1415889 5 77 3.0 2.5 2.8 1.3 111 chr3L 1415778 intron Ptp61F - chr3L 1415834 intron Ptp61F - chr3L 1415889 intron Ptp61F - chr3L_5_1415001 chr3L_1415001 RAL-861 487 chr3L 1506004 1506014 chr3L 1513601 1513611 17.6 4 7597 6.5 2.0 4.2 0.8 7607 chr3L 1506004 intron,intron Psa +,cue - chr3L 1509808 intron,intron Psa +,cue - chr3L 1513611 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-861 488 chr3L 1506024 1506031 chr3L 1513597 1513603 17.6 4 7580 4.0 2.0 3.0 1.0 7579 chr3L 1506024 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513603 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-861 489 chr3L 1536650 1536663 chr3L 1536771 1536786 4 124 2.5 2.5 2.5 1.1 136 chr3L 1536650 5` UTR CG12091 - chr3L 1536718 5` UTR CG12091 - chr3L 1536786 5` UTR CG12091 - chr3L_4_1535001 chr3L_1535001 RAL-861 490 chr3L 2033438 2033455 chr3L 2033523 2033539 7 82 2.0 4.0 3.0 1.8 101 chr3L 2033438 intergenic not near genes chr3L 2033488 intergenic not near genes chr3L 2033539 intergenic not near genes chr3L_7_2030001 chr3L_2030001 RAL-861 491 chr3L 2168771 2168808 chr3L 2168862 2168899 4 89 1.0 0.5 0.8 2.2 128 chr3L 2168771 exon CG15879 - chr3L 2168835 intron CG15879 - chr3L 2168899 intron CG15879 - chr3L_4_2165001 chr3L_2165001 RAL-861 492 chr3L 2308004 2308027 chr3L 2308108 2308133 7 105 3.5 2.5 3.0 1.8 129 chr3L 2308004 intergenic not near genes chr3L 2308068 intergenic not near genes chr3L 2308133 intergenic not near genes chr3L_7_2305001 chr3L_2305001 RAL-861 493 chr3L 2321163 2321193 chr3L 2321239 2321259 4 73 1.0 4.5 2.8 1.1 96 chr3L 2321163 intergenic not near genes chr3L 2321211 intergenic not near genes chr3L 2321259 intergenic not near genes chr3L_4_2320001 chr3L_2320001 RAL-861 494 chr3L 2380343 2380369 chr3L 2380420 2380425 5 71 2.5 3.0 2.8 1.3 82 chr3L 2380343 intergenic not near genes chr3L 2380384 intergenic not near genes chr3L 2380425 intergenic not near genes chr3L_5_2380001 chr3L_2380001 RAL-861 495 chr3L 2447506 2447538 chr3L 2456662 2456686 roo 9 9151 1.0 5.5 3.2 2.1 9180 chr3L 2447506 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456686 intron CG45186 + chr3L_9_2450001 chr3L_2450001 RAL-861 496 chr3L 2533664 2533679 chr3L 2533729 2533761 6 76 3.0 2.5 2.8 1.6 97 chr3L 2533664 intron Spn - chr3L 2533712 intron Spn - chr3L 2533761 intron Spn - chr3L_6_2530001 chr3L_2530001 RAL-861 497 chr3L 2561532 2561559 chr3L 2561609 2561636 4 74 1.0 0.5 0.8 2.2 104 chr3L 2561532 intron msn - chr3L 2561584 intron msn - chr3L 2561636 intron msn - chr3L_4_2560001 chr3L_2560001 RAL-861 498 chr3L 2626410 2626439 chr3L 2626534 2626563 7 124 2.0 1.0 1.5 2.8 153 chr3L 2626410 intron Pxn - chr3L 2626486 intron Pxn - chr3L 2626563 intron Pxn - chr3L_7_2625001 chr3L_2625001 RAL-861 499 chr3L 2668128 2668142 chr3L 2668208 2668225 6 80 1.5 5.0 3.2 1.4 97 chr3L 2668128 intron Fife - chr3L 2668176 intron Fife - chr3L 2668225 intron Fife - chr3L_6_2665001 chr3L_2665001 RAL-861 500 chr3L 2683951 2683970 chr3L 2684027 2684046 4 72 1.5 1.5 1.5 1.6 95 chr3L 2683951 intron Fife - chr3L 2683998 intron Fife - chr3L 2684046 intron Fife - chr3L_4_2680001 chr3L_2680001 RAL-861 501 chr3L 2700903 2700921 chr3L 2701059 2701059 4 152 2.5 2.5 2.5 1.1 156 chr3L 2700903 intron Fife - chr3L 2700981 intron Fife - chr3L 2701059 intron Fife - chr3L_4_2700001 chr3L_2700001 RAL-861 502 chr3L 2731518 2731552 chr3L 2731599 2731624 10 78 3.0 1.5 2.2 3.1 106 chr3L 2731518 intron Mrtf - chr3L 2731571 intron Mrtf - chr3L 2731624 intron Mrtf - chr3L_10_2730001 chr3L_2730001 RAL-861 503 chr3L 2854482 2854503 chr3L 2854557 2854581 5 72 4.0 1.5 2.8 1.3 99 chr3L 2854482 intron CG43444 - chr3L 2854532 intron CG43444 - chr3L 2854581 intron CG43444 - chr3L_5_2850001 chr3L_2850001 RAL-861 504 chr3L 2900512 2900538 chr3L 2900589 2900615 6 77 1.0 7.5 4.2 1.2 103 chr3L 2900512 intron Shab + chr3L 2900564 intron Shab + chr3L 2900615 intron Shab + chr3L_6_2900001 chr3L_2900001 RAL-861 505 chr3L 3084479 3084511 chr3L 3084560 3084593 5 82 1.5 1.5 1.5 2.0 114 chr3L 3084479 intron CG11486 + chr3L 3084536 intron CG11486 + chr3L 3084593 intron CG11486 + chr3L_5_3080001 chr3L_3080001 RAL-861 506 chr3L 3259632 3259830 chr3L 3259725 3259930 5 95 0.0 5.5 2.8 1.3 298 chr3L 3259632 intron ckd + chr3L 3259781 intron ckd + chr3L 3259930 intron ckd + chr3L_5_3255001 chr3L_3255001 RAL-861 507 chr3L 3281464 3281475 chr3L 3281931 3281954 Doc 10 485 3.0 2.5 2.8 2.6 490 chr3L 3281464 intron CG12017 + chr3L 3281709 intron CG12017 + chr3L 3281954 intron CG12017 + chr3L_10_3280001 chr3L_3280001 RAL-861 508 chr3L 3307775 3307806 chr3L 3308288 3308318 5 512 0.5 1.5 1.0 2.5 543 chr3L 3307775 intron ZnT63C + chr3L 3308046 intron ZnT63C + chr3L 3308318 intron ZnT63C + chr3L_5_3305001 chr3L_3305001 RAL-861 509 chr3L 3475074 3475110 chr3L 3475517 3475550 jockey 12 442 0.5 3.5 2.0 4.0 476 chr3L 3475074 intron CG42324 + chr3L 3475312 intron CG42324 + chr3L 3475550 intron CG42324 + chr3L_12_3475001 chr3L_3475001 RAL-861 510 chr3L 3601302 3601329 chr3L 3606613 3606640 copia 8 5311 5.0 3.5 4.2 1.5 5338 chr3L 3601302 intron Eip63E + chr3L 3603971 intron Eip63E + chr3L 3606640 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-861 511 chr3L 4058842 4058870 chr3L 4058922 4058950 7 78 2.0 1.5 1.8 2.5 108 chr3L 4058842 3` UTR CG1136 + chr3L 4058896 3` UTR CG1136 + chr3L 4058950 3` UTR CG1136 + chr3L_7_4055001 chr3L_4055001 RAL-861 512 chr3L 4412869 4412898 chr3L 4412947 4412977 9 79 2.5 4.5 3.5 2.0 108 chr3L 4412869 intron DOR + chr3L 4412923 intron DOR + chr3L 4412977 intron DOR + chr3L_9_4410001 chr3L_4410001 RAL-861 513 chr3L 4477580 4477604 chr3L 4478156 4478182 6 576 20.5 23.5 22.0 0.3 602 chr3L 4477580 intergenic not near genes chr3L 4477881 intergenic not near genes chr3L 4478182 intergenic not near genes chr3L_6_4475001 chr3L_4475001 RAL-861 514 chr3L 4607277 4607290 chr3L 4607368 4607381 4 91 0.5 1.0 0.8 2.2 104 chr3L 4607277 intron Src64B - chr3L 4607329 intron Src64B - chr3L 4607381 intron Src64B - chr3L_4_4605001 chr3L_4605001 RAL-861 515 chr3L 4797967 4797990 chr3L 4798047 4798070 8 76 6.0 2.0 4.0 1.6 103 chr3L 4797967 intergenic not near genes chr3L 4798018 intergenic not near genes chr3L 4798070 intergenic not near genes chr3L_8_4795001 chr3L_4795001 RAL-861 516 chr3L 4858308 4858314 chr3L 4858397 4858404 5 89 5.0 9.5 7.2 0.6 96 chr3L 4858308 intergenic not near genes chr3L 4858356 intergenic not near genes chr3L 4858404 intergenic not near genes chr3L_5_4855001 chr3L_4855001 RAL-861 517 chr3L 4858325 4858337 chr3L 4858391 4858425 5 81 2.0 5.5 3.8 1.0 100 chr3L 4858325 intergenic not near genes chr3L 4858375 intergenic not near genes chr3L 4858425 intergenic not near genes chr3L_5_4855001 chr3L_4855001 RAL-861 518 chr3L 4862018 4862043 chr3L 4862107 4862142 13 97 3.5 3.0 3.2 3.1 124 chr3L 4862018 intron CG17150 + chr3L 4862080 intron CG17150 + chr3L 4862142 intron CG17150 + chr3L_13_4860001 chr3L_4860001 RAL-861 519 chr3L 5212254 5212269 chr3L 5212325 5212328 5 76 2.0 1.5 1.8 1.8 74 chr3L 5212254 intron shep - chr3L 5212291 intron shep - chr3L 5212328 intron shep - chr3L_5_5210001 chr3L_5210001 RAL-861 520 chr3L 5434699 5434716 chr3L 5434775 5434793 4 77 2.5 3.0 2.8 1.1 94 chr3L 5434699 intron CG34391 + chr3L 5434746 intron CG34391 + chr3L 5434793 intron CG34391 + chr3L_4_5430001 chr3L_5430001 RAL-861 521 chr3L 5482951 5483091 chr3L 5483159 5483208 10 133 1.0 0.5 0.8 5.6 257 chr3L 5482951 exon CG4835 + chr3L 5483080 exon CG4835 + chr3L 5483208 exon CG4835 + chr3L_10_5480001 chr3L_5480001 RAL-861 522 chr3L 5537734 5537751 chr3L 5538076 5538093 jockey 4 342 1.5 3.5 2.5 1.1 359 chr3L 5537734 intergenic not near genes chr3L 5537914 intergenic CG10625 - chr3L 5538093 intergenic CG10625 - chr3L_4_5535001 chr3L_5535001 RAL-861 523 chr3L 5701564 5701597 chr3L 5701645 5701678 9 78 4.5 2.0 3.2 2.1 114 chr3L 5701564 intron sif + chr3L 5701621 intron sif + chr3L 5701678 intron sif + chr3L_9_5700001 chr3L_5700001 RAL-861 524 chr3L 5727182 5727198 chr3L 5727655 5727669 4 472 2.0 3.0 2.5 1.1 487 chr3L 5727182 intron sif + chr3L 5727426 intron sif + chr3L 5727669 intron sif + chr3L_4_5725001 chr3L_5725001 RAL-861 525 chr3L 5926319 5926334 chr3L 5926509 5926524 BS 4 190 6.0 5.5 5.8 0.6 205 chr3L 5926319 intron Vap-33B + chr3L 5926422 intron Vap-33B + chr3L 5926524 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-861 526 chr3L 5926335 5926350 chr3L 5926503 5926540 BS 7 176 2.5 4.0 3.2 1.7 205 chr3L 5926335 intron Vap-33B + chr3L 5926438 intron Vap-33B + chr3L 5926540 intron Vap-33B + chr3L_7_5925001 chr3L_5925001 RAL-861 527 chr3L 6022241 6022272 chr3L 6022324 6022351 6 80 2.0 2.5 2.2 1.9 110 chr3L 6022241 intron PVRAP + chr3L 6022296 intron PVRAP + chr3L 6022351 intron PVRAP + chr3L_6_6020001 chr3L_6020001 RAL-861 528 chr3L 6052613 6052626 chr3L 6052747 6052761 5 134 2.0 6.0 4.0 1.0 148 chr3L 6052613 exon Jon65Aii + chr3L 6052687 intron Jon65Aii + chr3L 6052761 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-861 529 chr3L 6220912 6220941 chr3L 6230064 6230088 roo 7 9151 5.5 2.5 4.0 1.4 9176 chr3L 6220912 5` UTR pncr008:3L + chr3L 6225500 intergenic not near genes chr3L 6230088 intergenic not near genes chr3L_7_6225001 chr3L_6225001 RAL-861 530 chr3L 6442231 6442259 chr3L 6442314 6442330 6 84 0.5 1.0 0.8 3.3 99 chr3L 6442231 intron CG42747 + chr3L 6442280 intron CG42747 + chr3L 6442330 intron CG42747 + chr3L_6_6440001 chr3L_6440001 RAL-861 531 chr3L 6529674 6529679 chr3L 6529741 6529746 4 70 2.5 1.0 1.8 1.4 72 chr3L 6529674 intron sfl + chr3L 6529710 intron sfl + chr3L 6529746 intron sfl + chr3L_4_6525001 chr3L_6525001 RAL-861 532 chr3L 6537308 6537337 chr3L 6537396 6537408 10 84 3.0 3.0 3.0 2.5 100 chr3L 6537308 intron sfl + chr3L 6537358 intron sfl + chr3L 6537408 intron sfl + chr3L_10_6535001 chr3L_6535001 RAL-861 533 chr3L 6632414 6632429 chr3L 6632501 6632516 5 86 5.0 2.5 3.8 1.0 102 chr3L 6632414 intron GluRIA + chr3L 6632465 intron GluRIA + chr3L 6632516 intron GluRIA + chr3L_5_6630001 chr3L_6630001 RAL-861 534 chr3L 6632430 6632447 chr3L 6632500 6632534 5 78 3.5 2.0 2.8 1.3 104 chr3L 6632430 intron GluRIA + chr3L 6632482 intron GluRIA + chr3L 6632534 intron GluRIA + chr3L_5_6630001 chr3L_6630001 RAL-861 535 chr3L 6887521 6887551 chr3L 6895013 6895040 roo 5 7489 3.0 2.0 2.5 1.4 7519 chr3L 6887521 intergenic not near genes chr3L 6891280 intergenic not near genes chr3L 6895040 intergenic not near genes chr3L_5_6890001 chr3L_6890001 RAL-861 536 chr3L 6963565 6963600 chr3L 6963649 6963685 10 82 4.5 7.0 5.8 1.5 120 chr3L 6963565 intron sgl - chr3L 6963625 intron sgl - chr3L 6963685 intron sgl - chr3L_10_6960001 chr3L_6960001 RAL-861 537 chr3L 6974507 6974523 chr3L 6974608 6974624 4 100 4.5 6.5 5.5 0.6 117 chr3L 6974507 intron Galphai - chr3L 6974566 intron Galphai - chr3L 6974624 intron Galphai - chr3L_4_6970001 chr3L_6970001 RAL-861 538 chr3L 7090027 7090056 chr3L 7090103 7090137 4 75 2.0 1.5 1.8 1.4 110 chr3L 7090027 intergenic not near genes chr3L 7090082 intergenic not near genes chr3L 7090137 intergenic not near genes chr3L_4_7090001 chr3L_7090001 RAL-861 539 chr3L 7100449 7100462 chr3L 7100517 7100539 4 74 1.0 2.0 1.5 1.6 90 chr3L 7100449 intron form3 + chr3L 7100494 intron form3 + chr3L 7100539 intron form3 + chr3L_4_7100001 chr3L_7100001 RAL-861 540 chr3L 7112596 7112604 chr3L 7112683 7112691 4 87 1.5 3.0 2.2 1.2 95 chr3L 7112596 intron form3 + chr3L 7112644 intron form3 + chr3L 7112691 intron form3 + chr3L_4_7110001 chr3L_7110001 RAL-861 541 chr3L 7150875 7150899 chr3L 7150951 7150975 6 76 1.5 2.0 1.8 2.1 100 chr3L 7150875 intron corn - chr3L 7150925 intron corn - chr3L 7150975 intron corn - chr3L_6_7150001 chr3L_7150001 RAL-861 542 chr3L 7227378 7227396 chr3L 7227513 7227519 5 131 1.5 2.0 1.8 1.8 141 chr3L 7227378 intergenic not near genes chr3L 7227448 intergenic not near genes chr3L 7227519 intergenic not near genes chr3L_5_7225001 chr3L_7225001 RAL-861 543 chr3L 7285328 7285459 chr3L 7285439 7285537 6 106 2.5 0.0 1.2 2.7 209 chr3L 7285328 intron unc-13-4A - chr3L 7285432 intron unc-13-4A - chr3L 7285537 intron unc-13-4A - chr3L_6_7285001 chr3L_7285001 RAL-861 544 chr3L 7358312 7358324 chr3L 7359578 7359608 8 1275 17.5 16.0 16.8 0.4 1296 chr3L 7358312 exon pst - chr3L 7358960 exon pst - chr3L 7359608 intron pst - chr3L_8_7355001 chr3L_7355001 RAL-861 545 chr3L 7377324 7377345 chr3L 7380429 7380442 297 4 3103 1.5 3.5 2.5 1.1 3118 chr3L 7377324 intron SMSr - chr3L 7378883 intron SMSr - chr3L 7380442 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-861 546 chr3L 7572295 7572313 chr3L 7572382 7572400 6 86 2.0 6.0 4.0 1.2 105 chr3L 7572295 intergenic not near genes chr3L 7572348 intergenic not near genes chr3L 7572400 intergenic not near genes chr3L_6_7570001 chr3L_7570001 RAL-861 547 chr3L 7574241 7574244 chr3L 7574303 7574303 4 70 1.5 1.0 1.2 1.8 62 chr3L 7574241 intergenic not near genes chr3L 7574272 intergenic not near genes chr3L 7574303 intergenic not near genes chr3L_4_7570001 chr3L_7570001 RAL-861 548 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028207 6.0 19.0 12.5 0.3 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-861 549 chr3L 7883751 7883778 chr3L 7883908 7883917 8 154 1.5 0.5 1.0 4.0 166 chr3L 7883751 intron CG32365 + chr3L 7883834 intron CG32365 + chr3L 7883917 intron CG32365 + chr3L_8_7880001 chr3L_7880001 RAL-861 550 chr3L 7886518 7886547 chr3L 7889033 7889065 Stalker4 6 2515 0.0 0.5 0.2 5.0 2547 chr3L 7886518 intron CG32365 + chr3L 7887792 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-861 551 chr3L 7985363 7985394 chr3L 7987691 7987722 NOF 5 2324 2.5 3.0 2.8 1.3 2359 chr3L 7985363 intron nmo + chr3L 7986542 intron nmo + chr3L 7987722 intron nmo + chr3L_5_7985001 chr3L_7985001 RAL-861 552 chr3L 8041561 8041571 chr3L 8041638 8041649 4 77 7.5 2.5 5.0 0.7 88 chr3L 8041561 intron nmo + chr3L 8041605 intron nmo + chr3L 8041649 intron nmo + chr3L_4_8040001 chr3L_8040001 RAL-861 553 chr3L 8208132 8208146 chr3L 8208264 8208278 4 132 8.5 4.0 6.2 0.6 146 chr3L 8208132 intergenic not near genes chr3L 8208205 intergenic not near genes chr3L 8208278 intergenic not near genes chr3L_4_8205001 chr3L_8205001 RAL-861 554 chr3L 8295799 8295825 chr3L 8295954 8295961 4 147 3.0 4.0 3.5 0.9 162 chr3L 8295799 intergenic CG7201 - chr3L 8295880 intergenic not near genes chr3L 8295961 intergenic not near genes chr3L_4_8295001 chr3L_8295001 RAL-861 555 chr3L 8392759 8392784 chr3L 8392843 8392869 6 83 4.0 4.5 4.2 1.2 110 chr3L 8392759 intergenic Jon66Cii -,Jon66Ci + chr3L 8392814 intergenic Jon66Cii -,Jon66Ci + chr3L 8392869 exon Jon66Cii - chr3L_6_8390001 chr3L_8390001 RAL-861 556 chr3L 8791272 8791305 chr3L 8796691 8796711 I-element 8 5415 1.5 0.0 0.8 4.4 5439 chr3L 8791272 exon Fhos + chr3L 8793992 intron Fhos + chr3L 8796711 intron Fhos + chr3L_8_8790001 chr3L_8790001 RAL-861 557 chr3L 8950546 8950578 chr3L 8950640 8950672 6 94 4.0 4.5 4.2 1.2 126 chr3L 8950546 intron,intron CG43783 -,orb2 - chr3L 8950609 intron,intron CG43783 -,orb2 - chr3L 8950672 intron,intron CG43783 -,orb2 - chr3L_6_8950001 chr3L_8950001 RAL-861 558 chr3L 9003952 9003973 chr3L 9004035 9004057 5 83 2.5 0.5 1.5 2.0 105 chr3L 9003952 intergenic not near genes chr3L 9004004 intergenic not near genes chr3L 9004057 intergenic not near genes chr3L_5_9000001 chr3L_9000001 RAL-861 559 chr3L 9013689 9013691 chr3L 18417066 18417066 4 9403376 26.5 10.0 18.2 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-861 560 chr3L 9076925 9076958 chr3L 9084485 9084518 412 11 7557 3.0 3.5 3.2 2.6 7593 chr3L 9076925 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084518 exon Tequila + chr3L_11_9080001 chr3L_9080001 RAL-861 561 chr3L 9130557 9130580 chr3L 9134318 9134341 412 7 3758 4.0 3.5 3.8 1.5 3784 chr3L 9130557 intergenic bol - chr3L 9132449 intergenic not near genes chr3L 9134341 intergenic Dhpr + chr3L_7_9130001 chr3L_9130001 RAL-861 562 chr3L 9164718 9164731 chr3L 9166168 9166198 hobo 4 1456 2.0 1.0 1.5 1.6 1480 chr3L 9164718 intron Rdl - chr3L 9165458 intron Rdl - chr3L 9166198 intron Rdl - chr3L_4_9165001 chr3L_9165001 RAL-861 563 chr3L 9191873 9191893 chr3L 9191963 9191980 7 87 4.5 3.0 3.8 1.5 107 chr3L 9191873 intergenic not near genes chr3L 9191926 intergenic not near genes chr3L 9191980 intergenic not near genes chr3L_7_9190001 chr3L_9190001 RAL-861 564 chr3L 9219256 9219272 chr3L 9219911 9219937 jockey 8 656 3.0 1.5 2.2 2.5 681 chr3L 9219256 intergenic not near genes chr3L 9219596 intergenic not near genes chr3L 9219937 intergenic not near genes chr3L_8_9215001 chr3L_9215001 RAL-861 565 chr3L 9237498 9237519 chr3L 9237576 9237587 4 75 0.5 0.0 0.2 3.3 89 chr3L 9237498 intergenic not near genes chr3L 9237542 intergenic not near genes chr3L 9237587 intergenic not near genes chr3L_4_9235001 chr3L_9235001 RAL-861 566 chr3L 9270619 9270641 chr3L 9278374 9278376 roo 7 7750 1.5 1.0 1.2 3.2 7757 chr3L 9270619 intron GluRIB + chr3L 9274498 intron GluRIB + chr3L 9278376 intron GluRIB + chr3L_7_9270001 chr3L_9270001 RAL-861 567 chr3L 9290045 9290072 chr3L 9290120 9290134 4 72 1.0 0.0 0.5 2.7 89 chr3L 9290045 intergenic not near genes chr3L 9290090 intergenic not near genes chr3L 9290134 intergenic not near genes chr3L_4_9290001 chr3L_9290001 RAL-861 568 chr3L 9318824 9318845 chr3L 9318920 9318931 4 94 4.0 3.0 3.5 0.9 107 chr3L 9318824 intergenic not near genes chr3L 9318878 intergenic not near genes chr3L 9318931 intergenic not near genes chr3L_4_9315001 chr3L_9315001 RAL-861 569 chr3L 9493612 9493644 chr3L 9493689 9493689 6 72 2.5 3.0 2.8 1.6 77 chr3L 9493612 intergenic not near genes chr3L 9493650 intergenic not near genes chr3L 9493689 intergenic not near genes chr3L_6_9490001 chr3L_9490001 RAL-861 570 chr3L 9502635 9502638 chr3L 9502700 9502717 4 75 0.0 0.5 0.2 3.3 82 chr3L 9502635 intron path - chr3L 9502676 intron path - chr3L 9502717 intron path - chr3L_4_9500001 chr3L_9500001 RAL-861 571 chr3L 9519668 9519682 chr3L 9519738 9519774 4 87 3.0 3.5 3.2 1.0 106 chr3L 9519668 intron CG33700 - chr3L 9519721 intron CG33700 - chr3L 9519774 intron CG33700 - chr3L_4_9515001 chr3L_9515001 RAL-861 572 chr3L 9575914 9575936 chr3L 9580988 9581013 jockey 4 5076 5.5 2.5 4.0 0.8 5099 chr3L 9575914 intron CG42673 + chr3L 9578464 intron CG42673 + chr3L 9581013 intron CG42673 + chr3L_4_9575001 chr3L_9575001 RAL-861 573 chr3L 9637879 9637887 chr3L 9637938 9637969 4 72 2.0 1.5 1.8 1.4 90 chr3L 9637879 intron fry - chr3L 9637924 intron fry - chr3L 9637969 intron fry - chr3L_4_9635001 chr3L_9635001 RAL-861 574 chr3L 10003154 10003174 chr3L 10003251 10003271 4 97 0.5 0.5 0.5 2.7 117 chr3L 10003154 intron dpr6 + chr3L 10003212 intron dpr6 + chr3L 10003271 intron dpr6 + chr3L_4_10000001 chr3L_10000001 RAL-861 575 chr3L 10219239 10219263 chr3L 10219336 10219359 5 96 5.5 2.5 4.0 1.0 120 chr3L 10219239 exon CG32055 - chr3L 10219299 exon CG32055 - chr3L 10219359 exon CG32055 - chr3L_5_10215001 chr3L_10215001 RAL-861 576 chr3L 10248972 10249131 chr3L 10249049 10249181 5 72 0.5 0.0 0.2 4.2 209 chr3L 10248972 intergenic CR44540 - chr3L 10249076 intergenic CR44540 - chr3L 10249181 intergenic not near genes chr3L_5_10245001 chr3L_10245001 RAL-861 577 chr3L 10308760 10308771 chr3L 10308837 10308847 5 77 1.5 7.5 4.5 0.9 87 chr3L 10308760 intergenic not near genes chr3L 10308804 intergenic not near genes chr3L 10308847 intergenic not near genes chr3L_5_10305001 chr3L_10305001 RAL-861 578 chr3L 10381722 10381744 chr3L 10381806 10381829 4 84 0.5 2.5 1.5 1.6 107 chr3L 10381722 intergenic not near genes chr3L 10381776 intergenic not near genes chr3L 10381829 intergenic not near genes chr3L_4_10380001 chr3L_10380001 RAL-861 579 chr3L 10414963 10414972 chr3L 10417330 10417338 Doc 4 2368 1.0 2.5 1.8 1.4 2375 chr3L 10414963 intergenic CG12362 + chr3L 10416150 intergenic not near genes chr3L 10417338 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-861 580 chr3L 10417572 10417599 chr3L 10417645 10417657 6 69 3.5 2.5 3.0 1.5 85 chr3L 10417572 intergenic not near genes chr3L 10417614 intergenic not near genes chr3L 10417657 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-861 581 chr3L 10469929 10469952 chr3L 10470005 10470010 5 71 1.5 2.5 2.0 1.7 81 chr3L 10469929 intergenic not near genes chr3L 10469970 intergenic not near genes chr3L 10470010 intergenic not near genes chr3L_5_10465001 chr3L_10465001 RAL-861 582 chr3L 10476581 10476599 chr3L 10476668 10476671 4 82 5.5 2.5 4.0 0.8 90 chr3L 10476581 intergenic not near genes chr3L 10476626 intergenic not near genes chr3L 10476671 intergenic not near genes chr3L_4_10475001 chr3L_10475001 RAL-861 583 chr3L 10600460 10600468 chr3L 10600542 10600550 4 80 0.5 1.5 1.0 2.0 90 chr3L 10600460 intergenic not near genes chr3L 10600505 intergenic not near genes chr3L 10600550 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-861 584 chr3L 10762830 10762864 chr3L 10762914 10762948 5 80 3.0 3.5 3.2 1.2 118 chr3L 10762830 intergenic not near genes chr3L 10762889 intergenic not near genes chr3L 10762948 intergenic not near genes chr3L_5_10760001 chr3L_10760001 RAL-861 585 chr3L 11135777 11135793 chr3L 11135862 11135863 4 80 2.5 2.5 2.5 1.1 86 chr3L 11135777 intergenic CG32082 +,CG14143 + chr3L 11135820 intergenic CG32082 +,CG14143 + chr3L 11135863 intergenic CG32082 +,CG14143 + chr3L_4_11135001 chr3L_11135001 RAL-861 586 chr3L 11245106 11245121 chr3L 11245183 11245190 5 84 1.5 3.5 2.5 1.4 84 chr3L 11245106 intergenic not near genes chr3L 11245148 intergenic not near genes chr3L 11245190 intergenic not near genes chr3L_5_11245001 chr3L_11245001 RAL-861 587 chr3L 11264471 11264498 chr3L 11271418 11271450 17.6 5 6946 1.5 1.5 1.5 2.0 6979 chr3L 11264471 intergenic not near genes chr3L 11267960 intergenic not near genes chr3L 11271450 intergenic not near genes chr3L_5_11265001 chr3L_11265001 RAL-861 588 chr3L 11329696 11329728 chr3L 11332895 11332917 jockey 7 3198 1.0 2.0 1.5 2.8 3221 chr3L 11329696 intergenic not near genes chr3L 11331306 intergenic not near genes chr3L 11332917 intergenic not near genes chr3L_7_11330001 chr3L_11330001 RAL-861 589 chr3L 11564800 11564813 chr3L 11572414 11572429 412 6 7620 1.0 3.0 2.0 2.0 7629 chr3L 11564800 exon CG33267 + chr3L 11568614 intron CG33267 + chr3L 11572429 exon CG33267 + chr3L_6_11565001 chr3L_11565001 RAL-861 590 chr3L 11579558 11579585 chr3L 11579664 11579689 11 105 1.5 2.0 1.8 3.9 131 chr3L 11579558 intergenic CG43390 - chr3L 11579624 intergenic CG43390 - chr3L 11579689 intergenic CG43390 - chr3L_11_11575001 chr3L_11575001 RAL-861 591 chr3L 11723086 11723108 chr3L 11727877 11727882 Doc 4 4789 6.0 0.0 3.0 1.0 4796 chr3L 11723086 3` UTR Bmcp + chr3L 11725484 intron Bmcp + chr3L 11727882 3` UTR Bmcp + chr3L_4_11725001 chr3L_11725001 RAL-861 592 chr3L 11744027 11744037 chr3L 11744120 11744144 4 104 6.0 0.5 3.2 1.0 117 chr3L 11744027 exon CG6024 - chr3L 11744086 intron CG6024 - chr3L 11744144 intron CG6024 - chr3L_4_11740001 chr3L_11740001 RAL-861 593 chr3L 11849344 11849351 chr3L 11849444 11849450 4 99 2.0 4.0 3.0 1.0 106 chr3L 11849344 intergenic not near genes chr3L 11849397 intergenic not near genes chr3L 11849450 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-861 594 chr3L 12066389 12066401 chr3L 12066609 12066619 4 224 4.5 4.5 4.5 0.7 230 chr3L 12066389 intergenic not near genes chr3L 12066504 intergenic not near genes chr3L 12066619 intergenic not near genes chr3L_4_12065001 chr3L_12065001 RAL-861 595 chr3L 12151667 12151681 chr3L 12151744 12151758 4 77 9.5 10.5 10.0 0.4 91 chr3L 12151667 intron Nrx-IV + chr3L 12151712 intron Nrx-IV + chr3L 12151758 intron Nrx-IV + chr3L_4_12150001 chr3L_12150001 RAL-861 596 chr3L 12255194 12255200 chr3L 12255279 12255281 4 84 5.0 3.5 4.2 0.8 87 chr3L 12255194 intron app - chr3L 12255238 intron app - chr3L 12255281 intron app - chr3L_4_12255001 chr3L_12255001 RAL-861 597 chr3L 12304100 12304115 chr3L 12304167 12304191 4 73 2.5 4.5 3.5 0.9 91 chr3L 12304100 intergenic not near genes chr3L 12304146 intergenic not near genes chr3L 12304191 intergenic not near genes chr3L_4_12300001 chr3L_12300001 RAL-861 598 chr3L 12353939 12353949 chr3L 12354014 12354030 4 80 1.0 1.5 1.2 1.8 91 chr3L 12353939 intergenic not near genes chr3L 12353984 intergenic not near genes chr3L 12354030 intergenic not near genes chr3L_4_12350001 chr3L_12350001 RAL-861 599 chr3L 12369552 12369568 chr3L 12369624 12369658 4 107 1.0 0.5 0.8 2.2 106 chr3L 12369552 intron Ncc69 - chr3L 12369605 intron Ncc69 - chr3L 12369658 intron Ncc69 - chr3L_4_12365001 chr3L_12365001 RAL-861 600 chr3L 12378590 12378601 chr3L 12378745 12378755 5 162 6.5 7.5 7.0 0.6 165 chr3L 12378590 intron Ncc69 - chr3L 12378672 intron Ncc69 - chr3L 12378755 intron Ncc69 - chr3L_5_12375001 chr3L_12375001 RAL-861 601 chr3L 12488412 12488440 chr3L 12488539 12488566 9 127 1.5 1.5 1.5 3.6 154 chr3L 12488412 intron CG10660 - chr3L 12488489 intron CG10660 - chr3L 12488566 exon CG10660 - chr3L_9_12485001 chr3L_12485001 RAL-861 602 chr3L 12493891 12493916 chr3L 12493984 12494009 8 92 1.5 2.0 1.8 2.9 118 chr3L 12493891 intron CG10657 - chr3L 12493950 intron CG10657 - chr3L 12494009 intron CG10657 - chr3L_8_12490001 chr3L_12490001 RAL-861 603 chr3L 12578048 12578072 chr3L 12578136 12578160 4 88 0.0 0.0 0.0 4.0 112 chr3L 12578048 intergenic not near genes chr3L 12578104 intergenic not near genes chr3L 12578160 intergenic not near genes chr3L_4_12575001 chr3L_12575001 RAL-861 604 chr3L 12874933 12874959 chr3L 12877223 12877251 jockey 8 2292 2.5 1.5 2.0 2.7 2318 chr3L 12874933 intergenic not near genes chr3L 12876092 intergenic not near genes chr3L 12877251 intergenic not near genes chr3L_8_12875001 chr3L_12875001 RAL-861 605 chr3L 12919285 12919302 chr3L 12924756 12924770 Rt1c 4 5470 5.5 2.0 3.8 0.8 5485 chr3L 12919285 intergenic not near genes chr3L 12922028 intergenic not near genes chr3L 12924770 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-861 606 chr3L 12955135 12955161 chr3L 12955210 12955237 8 76 1.5 2.5 2.0 2.7 102 chr3L 12955135 intergenic CG10752 - chr3L 12955186 intergenic not near genes chr3L 12955237 intergenic not near genes chr3L_8_12955001 chr3L_12955001 RAL-861 607 chr3L 13257264 13257277 chr3L 13257347 13257360 5 82 6.0 8.0 7.0 0.6 96 chr3L 13257264 intron caps + chr3L 13257312 intron caps + chr3L 13257360 intron caps + chr3L_5_13255001 chr3L_13255001 RAL-861 608 chr3L 13361968 13361983 chr3L 13362062 13362077 4 94 5.0 3.5 4.2 0.8 109 chr3L 13361968 intergenic not near genes chr3L 13362022 intergenic not near genes chr3L 13362077 intergenic not near genes chr3L_4_13360001 chr3L_13360001 RAL-861 609 chr3L 13525175 13525186 chr3L 13532964 13532982 roo 5 7793 2.5 6.5 4.5 0.9 7807 chr3L 13525175 intergenic not near genes chr3L 13529078 intergenic not near genes chr3L 13532982 intergenic not near genes chr3L_5_13525001 chr3L_13525001 RAL-861 610 chr3L 13559960 13559995 chr3L 13560046 13560081 5 86 4.5 5.0 4.8 0.9 121 chr3L 13559960 intron bru-3 - chr3L 13560020 intron bru-3 - chr3L 13560081 intron bru-3 - chr3L_5_13560001 chr3L_13560001 RAL-861 611 chr3L 14185156 14185166 chr3L 14185232 14185242 4 75 6.5 3.0 4.8 0.7 86 chr3L 14185156 intergenic not near genes chr3L 14185199 intergenic not near genes chr3L 14185242 intergenic not near genes chr3L_4_14185001 chr3L_14185001 RAL-861 612 chr3L 14196436 14196446 chr3L 14196521 14196531 4 85 6.5 9.0 7.8 0.5 95 chr3L 14196436 intron nuf + chr3L 14196484 intron nuf + chr3L 14196531 intron nuf + chr3L_4_14195001 chr3L_14195001 RAL-861 613 chr3L 14245568 14245594 chr3L 14245661 14245688 1360 7 94 2.5 2.5 2.5 2.0 120 chr3L 14245568 3` UTR CR44561 - chr3L 14245628 3` UTR CR44561 - chr3L 14245688 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-861 614 chr3L 14282586 14282603 chr3L 14282666 14282680 5 79 4.0 4.5 4.2 1.0 94 chr3L 14282586 intron fz + chr3L 14282633 intron fz + chr3L 14282680 intron fz + chr3L_5_14280001 chr3L_14280001 RAL-861 615 chr3L 14295984 14296013 chr3L 14296470 14296499 roo 9 485 3.0 1.0 2.0 3.0 515 chr3L 14295984 intron fz + chr3L 14296242 intron fz + chr3L 14296499 intron fz + chr3L_9_14295001 chr3L_14295001 RAL-861 616 chr3L 14312026 14312057 chr3L 14316836 14316851 X-element 5 4806 2.0 0.5 1.2 2.3 4825 chr3L 14312026 exon fz + chr3L 14314438 intron fz + chr3L 14316851 intron fz + chr3L_5_14310001 chr3L_14310001 RAL-861 617 chr3L 14468458 14468473 chr3L 14473650 14473679 copia 4 5202 1.0 0.5 0.8 2.2 5221 chr3L 14468458 intron bbg - chr3L 14471068 intron bbg - chr3L 14473679 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-861 618 chr3L 14486018 14486024 chr3L 14486099 14486104 4 122 5.5 0.0 2.8 1.1 86 chr3L 14486018 intron bbg - chr3L 14486061 intron bbg - chr3L 14486104 intron bbg - chr3L_4_14485001 chr3L_14485001 RAL-861 619 chr3L 14585606 14585633 chr3L 14585683 14585711 7 73 4.0 4.0 4.0 1.4 105 chr3L 14585606 intron HGTX - chr3L 14585658 intron HGTX - chr3L 14585711 intron HGTX - chr3L_7_14585001 chr3L_14585001 RAL-861 620 chr3L 14640685 14640709 chr3L 14640770 14640792 6 82 9.5 4.5 7.0 0.8 107 chr3L 14640685 intron dlp + chr3L 14640738 intron dlp + chr3L 14640792 intron dlp + chr3L_6_14640001 chr3L_14640001 RAL-861 621 chr3L 14683028 14683052 chr3L 14683141 14683163 7 108 3.5 3.5 3.5 1.6 135 chr3L 14683028 intron ome + chr3L 14683096 intron ome + chr3L 14683163 intron ome + chr3L_7_14680001 chr3L_14680001 RAL-861 622 chr3L 14843263 14843294 chr3L 14843340 14843354 4 72 1.5 5.0 3.2 1.0 91 chr3L 14843263 intron CG17839 + chr3L 14843308 intron CG17839 + chr3L 14843354 intron CG17839 + chr3L_4_14840001 chr3L_14840001 RAL-861 623 chr3L 15085053 15085080 chr3L 15086216 15086228 1360 6 1162 2.0 3.0 2.5 1.7 1175 chr3L 15085053 intron cp309 - chr3L 15085640 intron cp309 - chr3L 15086228 intron cp309 - chr3L_6_15085001 chr3L_15085001 RAL-861 624 chr3L 15418503 15418529 chr3L 15418589 15418593 5 81 3.5 2.0 2.8 1.3 90 chr3L 15418503 intergenic not near genes chr3L 15418548 intergenic not near genes chr3L 15418593 intergenic not near genes chr3L_5_15415001 chr3L_15415001 RAL-861 625 chr3L 15444650 15444685 chr3L 15444743 15444776 16 86 3.0 2.5 2.8 4.2 126 chr3L 15444650 intergenic not near genes chr3L 15444713 intergenic not near genes chr3L 15444776 intergenic not near genes chr3L_16_15440001 chr3L_15440001 RAL-861 626 chr3L 15460282 15460303 chr3L 15460560 15460586 4 280 9.0 11.5 10.2 0.4 304 chr3L 15460282 intergenic not near genes chr3L 15460434 intergenic not near genes chr3L 15460586 intergenic not near genes chr3L_4_15460001 chr3L_15460001 RAL-861 627 chr3L 15541616 15541636 chr3L 15541707 15541723 5 90 1.5 0.5 1.0 2.5 107 chr3L 15541616 intron CrebA + chr3L 15541670 intron CrebA + chr3L 15541723 intron CrebA + chr3L_5_15540001 chr3L_15540001 RAL-861 628 chr3L 15691415 15691445 chr3L 15691497 15691527 4 77 1.0 1.5 1.2 1.8 112 chr3L 15691415 intron CG34451 - chr3L 15691471 intron CG34451 - chr3L 15691527 intron CG34451 - chr3L_4_15690001 chr3L_15690001 RAL-861 629 chr3L 15754590 15754618 chr3L 15754673 15754683 4 78 1.0 3.0 2.0 1.3 93 chr3L 15754590 intergenic not near genes chr3L 15754636 intergenic not near genes chr3L 15754683 intergenic not near genes chr3L_4_15750001 chr3L_15750001 RAL-861 630 chr3L 15773851 15773877 chr3L 15773931 15773957 12 75 6.0 5.0 5.5 1.8 106 chr3L 15773851 intergenic not near genes chr3L 15773904 intergenic not near genes chr3L 15773957 intergenic not near genes chr3L_12_15770001 chr3L_15770001 RAL-861 631 chr3L 15834994 15835016 chr3L 15835149 15835155 4 151 6.5 8.0 7.2 0.5 161 chr3L 15834994 intron CG18081 - chr3L 15835074 intron CG18081 - chr3L 15835155 intron CG18081 - chr3L_4_15835001 chr3L_15835001 RAL-861 632 chr3L 15895742 15895772 chr3L 15895854 15895883 8 109 4.5 2.5 3.5 1.8 141 chr3L 15895742 intron pHCl - chr3L 15895812 intron pHCl - chr3L 15895883 intron pHCl - chr3L_8_15895001 chr3L_15895001 RAL-861 633 chr3L 15899228 15899258 chr3L 15899793 15899812 jockey 4 556 1.0 1.5 1.2 1.8 584 chr3L 15899228 intergenic pHCl - chr3L 15899520 intergenic pHCl - chr3L 15899812 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-861 634 chr3L 16151494 16151521 chr3L 16151670 16151704 4 174 2.5 2.5 2.5 1.1 210 chr3L 16151494 intron CG5151 - chr3L 16151599 intron CG5151 - chr3L 16151704 intron CG5151 - chr3L_4_16150001 chr3L_16150001 RAL-861 635 chr3L 16162603 16162625 chr3L 16162687 16162692 4 80 6.0 5.0 5.5 0.6 89 chr3L 16162603 intron CG5151 - chr3L 16162648 intron CG5151 - chr3L 16162692 intron CG5151 - chr3L_4_16160001 chr3L_16160001 RAL-861 636 chr3L 16198409 16198422 chr3L 16206740 16206753 4 8332 12.0 11.0 11.5 0.3 8344 chr3L 16198409 intron CG33687 + chr3L 16202581 intergenic not near genes chr3L 16206753 intergenic not near genes chr3L_4_16200001 chr3L_16200001 RAL-861 637 chr3L 16236351 16236369 chr3L 16236466 16236484 4 113 1.5 1.0 1.2 1.8 133 chr3L 16236351 3` UTR l(3)72Dp + chr3L 16236418 3` UTR l(3)72Dp + chr3L 16236484 3` UTR l(3)72Dp + chr3L_4_16235001 chr3L_16235001 RAL-861 638 chr3L 16443848 16443875 chr3L 16446188 16446200 Doc 6 2333 0.0 2.0 1.0 3.0 2352 chr3L 16443848 intron,intron CG33158 +,dsx-c73A - chr3L 16445024 intron,intron CG33158 +,dsx-c73A - chr3L 16446200 intron,intron CG33158 +,dsx-c73A - chr3L_6_16445001 chr3L_16445001 RAL-861 639 chr3L 16450025 16450050 chr3L 16450104 16450135 4 83 0.0 1.5 0.8 2.2 110 chr3L 16450025 intron,intron CG33158 +,dsx-c73A - chr3L 16450080 intron,intron CG33158 +,dsx-c73A - chr3L 16450135 intron,intron CG33158 +,dsx-c73A - chr3L_4_16450001 chr3L_16450001 RAL-861 640 chr3L 16493983 16493994 chr3L 16494496 16494508 jockey 5 515 12.5 2.5 7.5 0.6 525 chr3L 16493983 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494246 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494508 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_5_16490001 chr3L_16490001 RAL-861 641 chr3L 16540056 16540086 chr3L 16540141 16540167 7 80 1.0 1.5 1.2 3.2 111 chr3L 16540056 intron CG43373 - chr3L 16540112 intron CG43373 - chr3L 16540167 intron CG43373 - chr3L_7_16540001 chr3L_16540001 RAL-861 642 chr3L 16559062 16559088 chr3L 16559146 16559155 6 78 0.5 4.0 2.2 1.9 93 chr3L 16559062 intergenic not near genes chr3L 16559108 intergenic not near genes chr3L 16559155 intergenic not near genes chr3L_6_16555001 chr3L_16555001 RAL-861 643 chr3L 16616524 16616531 chr3L 16621851 16621854 297 4 5326 1.5 2.5 2.0 1.3 5330 chr3L 16616524 3` UTR Abl - chr3L 16619189 3` UTR Abl - chr3L 16621854 3` UTR Abl - chr3L_4_16615001 chr3L_16615001 RAL-861 644 chr3L 16808040 16808072 chr3L 16808116 16808148 7 76 0.5 0.0 0.2 5.8 108 chr3L 16808040 intron nudC + chr3L 16808094 intron nudC + chr3L 16808148 intron nudC + chr3L_7_16805001 chr3L_16805001 RAL-861 645 chr3L 16861030 16861051 chr3L 16861129 16861153 7 100 2.0 4.0 3.0 1.8 123 chr3L 16861030 intron,exon Rh4 -,CG13029 + chr3L 16861092 intron,intron Rh4 -,CG13029 + chr3L 16861153 intron,exon Rh4 -,CG13029 + chr3L_7_16860001 chr3L_16860001 RAL-861 646 chr3L 16945731 16945740 chr3L 16954882 16954886 roo 5 9149 6.0 3.0 4.5 0.9 9155 chr3L 16945731 exon Obp73a + chr3L 16950308 intergenic not near genes chr3L 16954886 5` UTR Nc73EF + chr3L_5_16950001 chr3L_16950001 RAL-861 647 chr3L 16945746 16945761 chr3L 16954879 16954907 roo 7 9139 3.5 2.5 3.0 1.8 9161 chr3L 16945746 exon Obp73a + chr3L 16950326 intergenic not near genes chr3L 16954907 5` UTR Nc73EF + chr3L_7_16950001 chr3L_16950001 RAL-861 648 chr3L 17149168 17149181 chr3L 17149249 17149262 5 81 2.5 0.0 1.2 2.3 94 chr3L 17149168 intron Rbp6 - chr3L 17149215 intron Rbp6 - chr3L 17149262 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-861 649 chr3L 17155871 17155895 chr3L 17156035 17156045 9 160 2.5 3.0 2.8 2.4 174 chr3L 17155871 intron Rbp6 - chr3L 17155958 intron Rbp6 - chr3L 17156045 intron Rbp6 - chr3L_9_17155001 chr3L_17155001 RAL-861 650 chr3L 17395951 17395971 chr3L 17396051 17396069 4 100 2.0 0.5 1.2 1.8 118 chr3L 17395951 intergenic blot - chr3L 17396010 intergenic blot - chr3L 17396069 3` UTR blot - chr3L_4_17395001 chr3L_17395001 RAL-861 651 chr3L 17510746 17510765 chr3L 17510830 17510849 7 83 1.5 2.5 2.0 2.3 103 chr3L 17510746 exon Oatp74D + chr3L 17510798 intron Oatp74D + chr3L 17510849 intron Oatp74D + chr3L_7_17510001 chr3L_17510001 RAL-861 652 chr3L 17535811 17535844 chr3L 17535925 17535955 7 112 1.5 2.5 2.0 2.3 144 chr3L 17535811 intron Nedd4 + chr3L 17535883 intron Nedd4 + chr3L 17535955 intron Nedd4 + chr3L_7_17535001 chr3L_17535001 RAL-861 653 chr3L 17646014 17646033 chr3L 17646180 17646212 7 169 20.5 26.5 23.5 0.3 198 chr3L 17646014 exon CG43085 - chr3L 17646113 exon CG43085 - chr3L 17646212 exon CG43085 - chr3L_7_17645001 chr3L_17645001 RAL-861 654 chr3L 17924919 17924939 chr3L 17924984 17925018 5 74 1.0 0.5 0.8 2.8 99 chr3L 17924919 intergenic not near genes chr3L 17924968 intergenic not near genes chr3L 17925018 intergenic not near genes chr3L_5_17920001 chr3L_17920001 RAL-861 655 chr3L 18092781 18092801 chr3L 18092896 18092916 4 115 0.5 0.0 0.2 3.3 135 chr3L 18092781 intron CG13698 - chr3L 18092848 intron CG13698 - chr3L 18092916 intron CG13698 - chr3L_4_18090001 chr3L_18090001 RAL-861 656 chr3L 18106253 18106278 chr3L 18106371 18106397 8 118 1.5 1.0 1.2 3.6 144 chr3L 18106253 intergenic CG13698 -,mRpS26 + chr3L 18106325 intergenic CG13698 -,mRpS26 + chr3L 18106397 intergenic mRpS26 +,CG13698 - chr3L_8_18105001 chr3L_18105001 RAL-861 657 chr3L 9013690 9013692 chr3L 18417066 18417066 6 9403375 26.5 10.0 18.2 0.3 9403376 chr3L 9013690 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_6_13715001 chr3L_13715001 RAL-861 658 chr3L 18511892 18511901 chr3L 18511978 18511990 6 88 2.0 2.5 2.2 1.9 98 chr3L 18511892 intergenic not near genes chr3L 18511941 intergenic not near genes chr3L 18511990 intergenic not near genes chr3L_6_18510001 chr3L_18510001 RAL-861 659 chr3L 18528643 18528660 chr3L 18537790 18537804 roo 5 9153 1.5 0.5 1.0 2.5 9161 chr3L 18528643 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537804 intergenic not near genes chr3L_5_18530001 chr3L_18530001 RAL-861 660 chr3L 18538629 18538657 chr3L 18539122 18539150 5 491 0.5 1.5 1.0 2.5 521 chr3L 18538629 intergenic not near genes chr3L 18538890 intergenic not near genes chr3L 18539150 intergenic not near genes chr3L_5_18535001 chr3L_18535001 RAL-861 661 chr3L 18581336 18581363 chr3L 18581413 18581440 5 77 1.5 2.0 1.8 1.8 104 chr3L 18581336 intergenic not near genes chr3L 18581388 intergenic not near genes chr3L 18581440 intergenic not near genes chr3L_5_18580001 chr3L_18580001 RAL-861 662 chr3L 18656186 18656207 chr3L 18656270 18656292 9 82 3.5 2.0 2.8 2.4 106 chr3L 18656186 intron MYPT-75D + chr3L 18656239 intron MYPT-75D + chr3L 18656292 intron MYPT-75D + chr3L_9_18655001 chr3L_18655001 RAL-861 663 chr3L 18738661 18738693 chr3L 18738749 18738781 4 88 1.0 2.0 1.5 1.6 120 chr3L 18738661 intergenic not near genes chr3L 18738721 intergenic not near genes chr3L 18738781 intergenic not near genes chr3L_4_18735001 chr3L_18735001 RAL-861 664 chr3L 18772409 18772440 chr3L 18781090 18781121 roo 7 8676 2.0 3.0 2.5 2.0 8712 chr3L 18772409 intron ftz-f1 - chr3L 18776765 intron ftz-f1 - chr3L 18781121 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-861 665 chr3L 18833778 18833799 chr3L 18834942 18834963 1360 5 1159 3.0 1.0 2.0 1.7 1185 chr3L 18833778 intron Indy - chr3L 18834370 intron Indy - chr3L 18834963 intron Indy - chr3L_5_18830001 chr3L_18830001 RAL-861 666 chr3L 19008852 19008857 chr3L 19009186 19009195 jockey 4 337 2.0 6.0 4.0 0.8 343 chr3L 19008852 intron nkd - chr3L 19009024 intron nkd - chr3L 19009195 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-861 667 chr3L 19009992 19009999 chr3L 19010104 19010132 5 124 4.5 1.5 3.0 1.2 140 chr3L 19009992 intron nkd - chr3L 19010062 intron nkd - chr3L 19010132 intron nkd - chr3L_5_19010001 chr3L_19010001 RAL-861 668 chr3L 19025933 19025970 chr3L 19026017 19026036 5 80 3.5 0.5 2.0 1.7 103 chr3L 19025933 intron nkd - chr3L 19025984 intron nkd - chr3L 19026036 intron nkd - chr3L_5_19025001 chr3L_19025001 RAL-861 669 chr3L 19117040 19117073 chr3L 19124487 19124519 mdg1 10 7440 2.5 1.0 1.8 3.6 7479 chr3L 19117040 intron CG14082 - chr3L 19120780 intron CG14082 - chr3L 19124519 intron CG14082 - chr3L_10_19120001 chr3L_19120001 RAL-861 670 chr3L 19190073 19190104 chr3L 19190150 19190155 8 71 3.5 2.5 3.0 2.0 82 chr3L 19190073 intron fz2 - chr3L 19190114 intron fz2 - chr3L 19190155 intron fz2 - chr3L_8_19190001 chr3L_19190001 RAL-861 671 chr3L 19208075 19208092 chr3L 19209434 19209461 Doc 6 1368 3.0 3.0 3.0 1.5 1386 chr3L 19208075 intron fz2 - chr3L 19208768 intron fz2 - chr3L 19209461 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-861 672 chr3L 19244127 19244139 chr3L 19244190 19244214 4 74 2.0 2.5 2.2 1.2 87 chr3L 19244127 intergenic not near genes chr3L 19244170 intergenic not near genes chr3L 19244214 intergenic not near genes chr3L_4_19240001 chr3L_19240001 RAL-861 673 chr3L 19390724 19390759 chr3L 19390822 19390844 4 95 4.5 2.5 3.5 0.9 120 chr3L 19390724 intron CG32206 - chr3L 19390784 intron CG32206 - chr3L 19390844 intron CG32206 - chr3L_4_19390001 chr3L_19390001 RAL-861 674 chr3L 19861820 19861853 chr3L 19863608 19863641 S-element 9 1788 1.0 0.5 0.8 5.0 1821 chr3L 19861820 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863641 intergenic not near genes chr3L_9_19860001 chr3L_19860001 RAL-861 675 chr3L 19933537 19933558 chr3L 19934358 19934380 10 819 3.5 1.0 2.2 3.1 843 chr3L 19933537 intergenic CR45678 + chr3L 19933958 5` UTR CR45678 + chr3L 19934380 intergenic CR45678 + chr3L_10_19930001 chr3L_19930001 RAL-861 676 chr3L 19962958 19962977 chr3L 19963036 19963054 4 77 2.0 2.5 2.2 1.2 96 chr3L 19962958 intron Ac76E + chr3L 19963006 intron Ac76E + chr3L 19963054 intron Ac76E + chr3L_4_19960001 chr3L_19960001 RAL-861 677 chr3L 19981206 19981236 chr3L 19981286 19981316 4 80 1.0 1.0 1.0 2.0 110 chr3L 19981206 intergenic CG17732 + chr3L 19981261 intergenic CG17732 + chr3L 19981316 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-861 678 chr3L 20038819 20038853 chr3L 20038997 20038999 4 170 1.0 0.0 0.5 2.7 180 chr3L 20038819 intergenic not near genes chr3L 20038909 intergenic not near genes chr3L 20038999 intergenic not near genes chr3L_4_20035001 chr3L_20035001 RAL-861 679 chr3L 20081754 20081767 chr3L 20081837 20081850 5 82 2.5 2.0 2.2 1.6 96 chr3L 20081754 intron sNPF-R - chr3L 20081802 intron sNPF-R - chr3L 20081850 intron sNPF-R - chr3L_5_20080001 chr3L_20080001 RAL-861 680 chr3L 20148284 20148313 chr3L 20148374 20148403 8 87 3.5 1.5 2.5 2.3 119 chr3L 20148284 intergenic not near genes chr3L 20148344 intergenic not near genes chr3L 20148403 intergenic not near genes chr3L_8_20145001 chr3L_20145001 RAL-861 681 chr3L 20283378 20283412 chr3L 20283458 20283473 5 76 2.0 1.5 1.8 1.8 95 chr3L 20283378 intron gogo - chr3L 20283426 intron gogo - chr3L 20283473 intron gogo - chr3L_5_20280001 chr3L_20280001 RAL-861 682 chr3L 20283702 20283733 chr3L 20283783 20283790 10 76 2.0 2.0 2.0 3.3 88 chr3L 20283702 intron gogo - chr3L 20283746 intron gogo - chr3L 20283790 intron gogo - chr3L_10_20280001 chr3L_20280001 RAL-861 683 chr3L 20386940 20386963 chr3L 20387042 20387050 4 98 2.5 1.5 2.0 1.3 110 chr3L 20386940 intron fbl + chr3L 20386995 intron fbl + chr3L 20387050 intron fbl + chr3L_4_20385001 chr3L_20385001 RAL-861 684 chr3L 20536306 20536342 chr3L 20536387 20536420 6 77 0.0 1.5 0.8 3.3 114 chr3L 20536306 intron Rcd2 - chr3L 20536363 intron Rcd2 - chr3L 20536420 intron Rcd2 - chr3L_6_20535001 chr3L_20535001 RAL-861 685 chr3L 20553129 20553164 chr3L 20553216 20553251 11 84 3.5 1.0 2.2 3.4 122 chr3L 20553129 intergenic not near genes chr3L 20553190 intergenic not near genes chr3L 20553251 intergenic not near genes chr3L_11_20550001 chr3L_20550001 RAL-861 686 chr3L 20594809 20594831 chr3L 20594908 20594930 4 98 2.0 1.5 1.8 1.4 121 chr3L 20594809 intergenic not near genes chr3L 20594870 intergenic not near genes chr3L 20594930 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-861 687 chr3L 21014925 21014942 chr3L 21023401 21023423 Tirant 5 8479 4.0 4.0 4.0 1.0 8498 chr3L 21014925 intron skd - chr3L 21019174 intron skd - chr3L 21023423 intron skd - chr3L_5_21015001 chr3L_21015001 RAL-861 688 chr3L 21082210 21082237 chr3L 21082288 21082315 6 77 0.0 0.5 0.2 5.0 105 chr3L 21082210 intron ko - chr3L 21082262 intron ko - chr3L 21082315 intron ko - chr3L_6_21080001 chr3L_21080001 RAL-861 689 chr3L 21151868 21151892 chr3L 21156948 21156967 flea 7 5082 2.5 1.5 2.0 2.3 5099 chr3L 21151868 intron Ac78C - chr3L 21154418 intron Ac78C - chr3L 21156967 intron Ac78C - chr3L_7_21150001 chr3L_21150001 RAL-861 690 chr3L 21158521 21158545 chr3L 21158658 21158665 4 133 0.0 3.0 1.5 1.6 144 chr3L 21158521 intron Ac78C - chr3L 21158593 intron Ac78C - chr3L 21158665 intron Ac78C - chr3L_4_21155001 chr3L_21155001 RAL-861 691 chr3L 21161428 21161454 chr3L 21161507 21161533 6 78 1.5 2.5 2.0 2.0 105 chr3L 21161428 intron Ac78C - chr3L 21161480 intron Ac78C - chr3L 21161533 intron Ac78C - chr3L_6_21160001 chr3L_21160001 RAL-861 692 chr3L 21251536 21251563 chr3L 21251618 21251626 5 79 5.0 4.0 4.5 0.9 90 chr3L 21251536 intron Eip78C + chr3L 21251581 intron Eip78C + chr3L 21251626 intron Eip78C + chr3L_5_21250001 chr3L_21250001 RAL-861 693 chr3L 21412749 21412782 chr3L 21412820 21412852 4 74 1.5 3.5 2.5 1.1 103 chr3L 21412749 intron rgn + chr3L 21412800 intron rgn + chr3L 21412852 intron rgn + chr3L_4_21410001 chr3L_21410001 RAL-861 694 chr3L 21637326 21637334 chr3L 21637413 21637421 5 87 2.5 3.5 3.0 1.2 95 chr3L 21637326 intron CG32444 + chr3L 21637374 intron CG32444 + chr3L 21637421 intron CG32444 + chr3L_5_21635001 chr3L_21635001 RAL-861 695 chr3L 21637341 21637350 chr3L 21637411 21637437 5 79 1.5 3.0 2.2 1.6 96 chr3L 21637341 intron CG32444 + chr3L 21637389 intron CG32444 + chr3L 21637437 intron CG32444 + chr3L_5_21635001 chr3L_21635001 RAL-861 696 chr3L 21671061 21671084 chr3L 21671206 21671229 7 145 4.0 1.5 2.8 1.8 168 chr3L 21671061 intergenic not near genes chr3L 21671145 intergenic not near genes chr3L 21671229 intergenic not near genes chr3L_7_21670001 chr3L_21670001 RAL-861 697 chr3L 21749318 21749332 chr3L 21754478 21754480 Doc 4 5157 4.5 3.0 3.8 0.8 5162 chr3L 21749318 intron Syn1 - chr3L 21751899 intron Syn1 - chr3L 21754480 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-861 698 chr3L 21799938 21799961 chr3L 21800023 21800046 7 80 3.5 0.5 2.0 2.3 108 chr3L 21799938 intergenic not near genes chr3L 21799992 intergenic not near genes chr3L 21800046 intergenic not near genes chr3L_7_21795001 chr3L_21795001 RAL-861 699 chr3L 21836736 21836760 chr3L 21836814 21836846 4 82 0.5 0.0 0.2 3.3 110 chr3L 21836736 3` UTR P5CDh1 - chr3L 21836791 3` UTR P5CDh1 - chr3L 21836846 3` UTR P5CDh1 - chr3L_4_21835001 chr3L_21835001 RAL-861 700 chr3L 21871638 21871659 chr3L 21871705 21871718 5 66 3.5 1.0 2.2 1.6 80 chr3L 21871638 intron mub + chr3L 21871678 intron mub + chr3L 21871718 intron mub + chr3L_5_21870001 chr3L_21870001 RAL-861 701 chr3L 21950333 21950355 chr3L 21950409 21950432 7 75 3.0 6.5 4.8 1.2 99 chr3L 21950333 exon CG7448 + chr3L 21950382 exon CG7448 + chr3L 21950432 intron CG7448 + chr3L_7_21950001 chr3L_21950001 RAL-861 702 chr3L 22207348 22207357 chr3L 22207439 22207448 4 90 3.5 0.5 2.0 1.3 100 chr3L 22207348 intron olf413 + chr3L 22207398 intron olf413 + chr3L 22207448 intron olf413 + chr3L_4_22205001 chr3L_22205001 RAL-861 703 chr3L 22447198 22447214 chr3L 22447289 22447305 5 91 4.5 2.0 3.2 1.2 107 chr3L 22447198 intergenic not near genes chr3L 22447252 intergenic not near genes chr3L 22447305 intergenic not near genes chr3L_5_22445001 chr3L_22445001 RAL-861 704 chr3L 22507125 22507155 chr3L 22507209 22507238 7 86 2.0 2.5 2.2 2.2 113 chr3L 22507125 intergenic not near genes chr3L 22507182 intergenic not near genes chr3L 22507238 intergenic not near genes chr3L_7_22505001 chr3L_22505001 RAL-861 705 chr3L 22522700 22522716 chr3L 22522776 22522793 8 77 3.5 2.5 3.0 2.0 93 chr3L 22522700 intergenic not near genes chr3L 22522746 intergenic not near genes chr3L 22522793 intergenic not near genes chr3L_8_22520001 chr3L_22520001 RAL-861 706 chr3L 22555778 22555802 chr3L 22563238 22563242 blood 9 7454 2.5 3.5 3.0 2.2 7464 chr3L 22555778 intergenic not near genes chr3L 22559510 intergenic not near genes chr3L 22563242 intergenic not near genes chr3L_9_22555001 chr3L_22555001 RAL-861 707 chr3L 22577637 22577655 chr3L 22582412 22582428 Doc 6 4783 1.5 4.0 2.8 1.6 4791 chr3L 22577637 intergenic not near genes chr3L 22580032 intergenic not near genes chr3L 22582428 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-861 708 chr3L 22617189 22617221 chr3L 22624640 22624664 blood 7 7450 4.0 3.0 3.5 1.6 7475 chr3L 22617189 intron CG14459 - chr3L 22620926 intron CG14459 - chr3L 22624664 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-861 709 chr3L 22756398 22756429 chr3L 22756475 22756505 4 77 2.0 3.5 2.8 1.1 107 chr3L 22756398 intron SPoCk + chr3L 22756452 intron SPoCk + chr3L 22756505 intron SPoCk + chr3L_4_22755001 chr3L_22755001 RAL-861 710 chr3L 22761385 22761419 chr3L 22766819 22766853 Ivk 5 5434 1.0 1.0 1.0 2.5 5468 chr3L 22761385 intron SPoCk + chr3L 22764119 intron SPoCk + chr3L 22766853 intron SPoCk + chr3L_5_22760001 chr3L_22760001 RAL-861 711 chr3L 22838600 22838619 chr3L 22838681 22838700 5 81 4.5 4.5 4.5 0.9 100 chr3L 22838600 intergenic CG11226 + chr3L 22838650 intergenic CG11226 + chr3L 22838700 intergenic not near genes chr3L_5_22835001 chr3L_22835001 RAL-861 712 chr3L 22853461 22853723 chr3L 22853548 22853793 8 84 2.0 3.0 2.5 2.3 332 chr3L 22853461 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853627 5` UTR CR43426 + chr3L 22853793 5` UTR CR43426 + chr3L_8_22850001 chr3L_22850001 RAL-861 713 chr3L 22865989 22866012 chr3L 22867120 22867145 Doc 5 1129 1.5 1.0 1.2 2.3 1156 chr3L 22865989 intron CG33170 + chr3L 22866567 intron CG33170 + chr3L 22867145 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-861 714 chr3L 22980589 22980599 chr3L 22980666 22980684 5 83 2.5 1.5 2.0 1.7 95 chr3L 22980589 intergenic not near genes chr3L 22980636 intergenic not near genes chr3L 22980684 intergenic not near genes chr3L_5_22980001 chr3L_22980001 RAL-861 715 chr3L 23251951 23251977 chr3L 23252067 23252094 4 116 4.0 2.5 3.2 1.0 143 chr3L 23251951 intron nAChRalpha4 + chr3L 23252022 intron nAChRalpha4 + chr3L 23252094 intron nAChRalpha4 + chr3L_4_23250001 chr3L_23250001 RAL-861 716 chr3L 23428241 23428254 chr3L 23428321 23428334 7 78 6.0 2.5 4.2 1.3 93 chr3L 23428241 intergenic not near genes chr3L 23428288 intergenic not near genes chr3L 23428334 intergenic not near genes chr3L_7_23425001 chr3L_23425001 RAL-861 717 chr3L 23428255 23428264 chr3L 23428319 23428320 4 69 5.5 2.0 3.8 0.8 65 chr3L 23428255 intergenic not near genes chr3L 23428288 intergenic not near genes chr3L 23428320 intergenic not near genes chr3L_4_23425001 chr3L_23425001 RAL-861 718 chr3L 23468026 23468044 chr3L 23468112 23468130 4 80 8.5 8.5 8.5 0.4 104 chr3L 23468026 intergenic not near genes chr3L 23468078 intergenic not near genes chr3L 23468130 intergenic not near genes chr3L_4_23465001 chr3L_23465001 RAL-861 719 chr3L 23485864 23485889 chr3L 23485942 23485966 6 78 1.0 1.0 1.0 3.0 102 chr3L 23485864 intergenic not near genes chr3L 23485915 intergenic not near genes chr3L 23485966 intergenic not near genes chr3L_6_23485001 chr3L_23485001 RAL-861 720 chr3L 24168787 24168819 chr3L 24176114 24176147 ZAM 8 7323 3.5 3.0 3.2 1.9 7360 chr3L 24168787 intron Snap25 + chr3L 24172467 intron Snap25 + chr3L 24176147 intron Snap25 + chr3L_8_24170001 chr3L_24170001 RAL-861 721 chr3L 25464021 25464095 chr3L 25464108 25464190 7 87 2.5 2.0 2.2 2.2 169 chr3L 25464021 intergenic not near genes chr3L 25464106 intergenic not near genes chr3L 25464190 intergenic not near genes chr3L_7_25460001 chr3L_25460001 RAL-861 722 chr3L 25513587 25513609 chr3L 25513662 25513679 5 72 1.0 1.5 1.2 2.3 92 chr3L 25513587 intron CG41343 - chr3L 25513633 intron CG41343 - chr3L 25513679 intron CG41343 - chr3L_5_25510001 chr3L_25510001 RAL-861 723 chr3L 25514872 25514904 chr3L 25514961 25514996 6 91 1.5 1.5 1.5 2.4 124 chr3L 25514872 intron CG41343 - chr3L 25514934 intron CG41343 - chr3L 25514996 intron CG41343 - chr3L_6_25510001 chr3L_25510001 RAL-861 724 chr3L 25627822 25627836 chr3L 25627905 25627922 5 84 2.5 3.5 3.0 1.2 100 chr3L 25627822 intron CG41343 - chr3L 25627872 intron CG41343 - chr3L 25627922 intron CG41343 - chr3L_5_25625001 chr3L_25625001 RAL-861 725 chr3L 27390434 27390706 chr3L 27390637 27390767 4 101 25.5 19.5 22.5 0.2 333 chr3L 27390434 intron Dbp80 + chr3L 27390600 intron Dbp80 + chr3L 27390767 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-861 726 chr3R 2534150 2534158 chr3R 2541712 2541727 7 7568 15.0 27.5 21.2 0.3 7577 chr3R 2534150 intergenic not near genes chr3R 2537938 intergenic not near genes chr3R 2541727 intergenic not near genes chr3R_7_2535001 chr3R_2535001 RAL-861 727 chr3R 2534161 2534165 chr3R 2541702 2541734 5 7552 13.5 26.0 19.8 0.2 7573 chr3R 2534161 intergenic not near genes chr3R 2537948 intergenic not near genes chr3R 2541734 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-861 728 chr3R 4682766 4682785 chr3R 4683164 4683182 5 397 1.0 1.5 1.2 2.3 416 chr3R 4682766 intron CG43427 + chr3R 4682974 intron CG43427 + chr3R 4683182 intron CG43427 + chr3R_5_4680001 chr3R_4680001 RAL-861 729 chr3R 4722350 4722373 chr3R 4722484 4722510 4 134 1.0 1.5 1.2 1.8 160 chr3R 4722350 intron Nep2 - chr3R 4722430 intron Nep2 - chr3R 4722510 intron Nep2 - chr3R_4_4720001 chr3R_4720001 RAL-861 730 chr3R 4753241 4753273 chr3R 4757543 4757549 F-element 7 4298 3.5 5.5 4.5 1.3 4308 chr3R 4753241 intron,intron atms +,CG44098 - chr3R 4755395 intron,intron atms +,CG44098 - chr3R 4757549 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-861 731 chr3R 4846357 4846381 chr3R 4846434 4846459 5 77 3.0 2.5 2.8 1.3 102 chr3R 4846357 intergenic not near genes chr3R 4846408 intergenic not near genes chr3R 4846459 intergenic not near genes chr3R_5_4845001 chr3R_4845001 RAL-861 732 chr3R 4861571 4861598 chr3R 4861650 4861679 11 76 2.5 2.5 2.5 3.1 108 chr3R 4861571 intron opa + chr3R 4861625 intron opa + chr3R 4861679 intron opa + chr3R_11_4860001 chr3R_4860001 RAL-861 733 chr3R 4887491 4887511 chr3R 4894868 4894878 rover 5 7371 1.5 5.5 3.5 1.1 7387 chr3R 4887491 intergenic not near genes chr3R 4891184 intergenic not near genes chr3R 4894878 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-861 734 chr3R 5045845 5045867 chr3R 5052947 5052969 HMS-Beagle 4 7102 1.0 0.5 0.8 2.2 7124 chr3R 5045845 intron CR43635 - chr3R 5049407 intergenic not near genes chr3R 5052969 intergenic CR45588 - chr3R_4_5045001 chr3R_5045001 RAL-861 735 chr3R 5183094 5183122 chr3R 5183181 5183211 9 86 2.0 3.5 2.8 2.4 117 chr3R 5183094 intron cno - chr3R 5183152 intron cno - chr3R 5183211 intron cno - chr3R_9_5180001 chr3R_5180001 RAL-861 736 chr3R 5278090 5278123 chr3R 5278171 5278204 11 76 5.0 2.5 3.8 2.3 114 chr3R 5278090 intron mtd - chr3R 5278147 intron mtd - chr3R 5278204 intron mtd - chr3R_11_5275001 chr3R_5275001 RAL-861 737 chr3R 5746016 5746046 chr3R 5746257 5746286 pogo 7 239 1.5 1.5 1.5 2.8 270 chr3R 5746016 3` UTR Madm + chr3R 5746151 3` UTR Madm + chr3R 5746286 3` UTR Madm + chr3R_7_5745001 chr3R_5745001 RAL-861 738 chr3R 5822380 5822404 chr3R 5823546 5823571 1360 6 1167 4.0 3.5 3.8 1.2 1191 chr3R 5822380 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823571 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-861 739 chr3R 5840820 5840852 chr3R 5840909 5840919 13 83 3.5 4.5 4.0 2.6 99 chr3R 5840820 intergenic CG1213 + chr3R 5840870 intergenic CG1213 + chr3R 5840919 intergenic CG1213 + chr3R_13_5840001 chr3R_5840001 RAL-861 740 chr3R 5890100 5890125 chr3R 5890458 5890483 4 358 1.5 3.5 2.5 1.1 383 chr3R 5890100 intron CG34113 - chr3R 5890292 intron CG34113 - chr3R 5890483 intron CG34113 - chr3R_4_5890001 chr3R_5890001 RAL-861 741 chr3R 5927565 5927591 chr3R 5927802 5927831 pogo 6 239 1.0 4.0 2.5 1.7 266 chr3R 5927565 intron CG34113 - chr3R 5927698 intron CG34113 - chr3R 5927831 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-861 742 chr3R 5989335 5989369 chr3R 5989418 5989452 7 82 1.5 2.0 1.8 2.5 117 chr3R 5989335 5` UTR CR44927 + chr3R 5989394 5` UTR CR44927 + chr3R 5989452 5` UTR CR44927 + chr3R_7_5985001 chr3R_5985001 RAL-861 743 chr3R 6015966 6015992 chr3R 6024443 6024461 Tirant 9 8478 2.0 3.0 2.5 2.6 8495 chr3R 6015966 intergenic not near genes chr3R 6020214 intergenic not near genes chr3R 6024461 intergenic not near genes chr3R_9_6020001 chr3R_6020001 RAL-861 744 chr3R 6141933 6141950 chr3R 6141998 6142027 4 70 2.5 3.5 3.0 1.0 94 chr3R 6141933 intergenic not near genes chr3R 6141980 intergenic not near genes chr3R 6142027 intergenic not near genes chr3R_4_6140001 chr3R_6140001 RAL-861 745 chr3R 6158510 6158542 chr3R 6167090 6167125 Tirant 7 8582 5.0 3.0 4.0 1.4 8615 chr3R 6158510 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167125 intergenic CG1077 + chr3R_7_6160001 chr3R_6160001 RAL-861 746 chr3R 6175184 6175201 chr3R 6182451 6182460 HMS-Beagle2 5 7268 0.5 2.5 1.5 2.0 7276 chr3R 6175184 intergenic Osi1 + chr3R 6178822 intron CR45194 + chr3R 6182460 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-861 747 chr3R 6206282 6206319 chr3R 6206499 6206536 BS 13 215 2.0 3.5 2.8 3.4 254 chr3R 6206282 exon Osi24 + chr3R 6206409 intron Osi24 + chr3R 6206536 intron Osi24 + chr3R_13_6205001 chr3R_6205001 RAL-861 748 chr3R 6550323 6550349 chr3R 6550403 6550430 5 80 2.0 2.5 2.2 1.6 107 chr3R 6550323 intron dpr11 - chr3R 6550376 intron dpr11 - chr3R 6550430 intron dpr11 - chr3R_5_6550001 chr3R_6550001 RAL-861 749 chr3R 6842788 6842813 chr3R 6842871 6842886 5 81 0.0 2.5 1.2 2.3 98 chr3R 6842788 intron Scr - chr3R 6842837 intron Scr - chr3R 6842886 intron Scr - chr3R_5_6840001 chr3R_6840001 RAL-861 750 chr3R 7092781 7092817 chr3R 7093345 7093365 17 560 0.5 1.0 0.8 9.4 584 chr3R 7092781 3` UTR CR43685 - chr3R 7093073 intron CR43685 - chr3R 7093365 3` UTR CR43685 - chr3R_17_7090001 chr3R_7090001 RAL-861 751 chr3R 7103283 7103319 chr3R 7103359 7103382 7 70 4.5 2.0 3.2 1.7 99 chr3R 7103283 intron Alh - chr3R 7103332 intron Alh - chr3R 7103382 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-861 752 chr3R 7210604 7210613 chr3R 7210690 7210699 4 84 0.5 4.5 2.5 1.1 95 chr3R 7210604 intergenic not near genes chr3R 7210652 intergenic not near genes chr3R 7210699 intergenic not near genes chr3R_4_7210001 chr3R_7210001 RAL-861 753 chr3R 7447993 7448011 chr3R 7448069 7448089 5 78 1.0 2.0 1.5 2.0 96 chr3R 7447993 intergenic not near genes chr3R 7448041 intergenic not near genes chr3R 7448089 intergenic not near genes chr3R_5_7445001 chr3R_7445001 RAL-861 754 chr3R 7589808 7589828 chr3R 7589914 7589948 10 115 2.0 3.5 2.8 2.6 140 chr3R 7589808 intron CG34127 - chr3R 7589878 intron CG34127 - chr3R 7589948 intron CG34127 - chr3R_10_7585001 chr3R_7585001 RAL-861 755 chr3R 7619979 7619993 chr3R 7620062 7620081 4 87 1.5 3.5 2.5 1.1 102 chr3R 7619979 intron CG34127 - chr3R 7620030 intron CG34127 - chr3R 7620081 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-861 756 chr3R 7655010 7655033 chr3R 7655087 7655110 8 81 1.5 2.5 2.0 2.7 100 chr3R 7655010 intergenic not near genes chr3R 7655060 intergenic not near genes chr3R 7655110 intergenic not near genes chr3R_8_7655001 chr3R_7655001 RAL-861 757 chr3R 7677923 7677944 chr3R 7678036 7678056 4 113 0.5 1.5 1.0 2.0 133 chr3R 7677923 intron Nlg1 + chr3R 7677990 intron Nlg1 + chr3R 7678056 intron Nlg1 + chr3R_4_7675001 chr3R_7675001 RAL-861 758 chr3R 7729469 7729492 chr3R 7737407 7737429 Stalker2 4 7936 3.5 5.0 4.2 0.8 7960 chr3R 7729469 intergenic not near genes chr3R 7733449 intergenic not near genes chr3R 7737429 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-861 759 chr3R 7849653 7849677 chr3R 7850818 7850835 1360 7 1160 2.0 1.5 1.8 2.5 1182 chr3R 7849653 intron CG34384 + chr3R 7850244 intron CG34384 + chr3R 7850835 intron CG34384 + chr3R_7_7850001 chr3R_7850001 RAL-861 760 chr3R 7857654 7857672 chr3R 7857737 7857755 6 82 2.5 5.0 3.8 1.2 101 chr3R 7857654 3` UTR CG17816 - chr3R 7857704 3` UTR CG17816 - chr3R 7857755 3` UTR CG17816 - chr3R_6_7855001 chr3R_7855001 RAL-861 761 chr3R 7883132 7883150 chr3R 7883210 7883226 5 77 3.0 1.5 2.2 1.6 94 chr3R 7883132 intron CG17816 - chr3R 7883179 intron CG17816 - chr3R 7883226 intron CG17816 - chr3R_5_7880001 chr3R_7880001 RAL-861 762 chr3R 8107391 8107419 chr3R 8107525 8107535 6 130 3.0 2.5 2.8 1.6 144 chr3R 8107391 intron puc + chr3R 8107463 intron puc + chr3R 8107535 intron puc + chr3R_6_8105001 chr3R_8105001 RAL-861 763 chr3R 8213032 8213039 chr3R 8213099 8213116 4 75 2.5 1.0 1.8 1.4 84 chr3R 8213032 intergenic not near genes chr3R 8213074 intergenic not near genes chr3R 8213116 intergenic not near genes chr3R_4_8210001 chr3R_8210001 RAL-861 764 chr3R 8255507 8255541 chr3R 8255596 8255630 7 85 1.0 3.5 2.2 2.2 123 chr3R 8255507 intron mtg + chr3R 8255568 intron mtg + chr3R 8255630 intron mtg + chr3R_7_8255001 chr3R_8255001 RAL-861 765 chr3R 8339246 8339246 chr3R 21907534 21907536 5 13568289 12.0 14.0 13.0 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-861 766 chr3R 8376369 8376400 chr3R 8376766 8376797 5 399 16.0 11.5 13.8 0.3 428 chr3R 8376369 intron CG45263 - chr3R 8376583 intron CG45263 - chr3R 8376797 intron CG45263 - chr3R_5_8375001 chr3R_8375001 RAL-861 767 chr3R 8403005 8403040 chr3R 8412171 8412182 roo 14 9160 1.5 3.5 2.5 4.0 9177 chr3R 8403005 intron CG45263 - chr3R 8407594 intron CG45263 - chr3R 8412182 intron CG45263 - chr3R_14_8405001 chr3R_8405001 RAL-861 768 chr3R 8478090 8478105 chr3R 8478166 8478181 6 78 0.5 2.0 1.2 2.7 91 chr3R 8478090 intergenic CG45263 - chr3R 8478136 intergenic not near genes chr3R 8478181 intergenic not near genes chr3R_6_8475001 chr3R_8475001 RAL-861 769 chr3R 8538347 8538367 chr3R 8538430 8538435 6 79 0.5 8.0 4.2 1.2 88 chr3R 8538347 intergenic not near genes chr3R 8538391 intergenic not near genes chr3R 8538435 intergenic not near genes chr3R_6_8535001 chr3R_8535001 RAL-861 770 chr3R 8570484 8570507 chr3R 8575120 8575125 HMS-Beagle 8 4634 3.5 8.5 6.0 1.1 4641 chr3R 8570484 intergenic not near genes chr3R 8572804 intergenic not near genes chr3R 8575125 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-861 771 chr3R 8575927 8575942 chr3R 8576009 8576025 5 81 5.5 4.5 5.0 0.8 98 chr3R 8575927 intergenic not near genes chr3R 8575976 intergenic not near genes chr3R 8576025 intergenic not near genes chr3R_5_8575001 chr3R_8575001 RAL-861 772 chr3R 8601776 8601786 chr3R 8610929 8610939 roo 5 9153 5.5 3.0 4.2 1.0 9163 chr3R 8601776 intron 5-HT2B + chr3R 8606358 intron 5-HT2B + chr3R 8610939 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-861 773 chr3R 8614799 8614813 chr3R 8614989 8615014 8 197 0.5 3.5 2.0 2.7 215 chr3R 8614799 intron 5-HT2B + chr3R 8614906 intron 5-HT2B + chr3R 8615014 intron 5-HT2B + chr3R_8_8610001 chr3R_8610001 RAL-861 774 chr3R 8621541 8621561 chr3R 8621618 8621628 4 74 5.0 3.0 4.0 0.8 87 chr3R 8621541 intron 5-HT2B + chr3R 8621584 intron 5-HT2B + chr3R 8621628 intron 5-HT2B + chr3R_4_8620001 chr3R_8620001 RAL-861 775 chr3R 8636932 8636965 chr3R 8637235 8637268 10 297 1.5 3.0 2.2 3.1 336 chr3R 8636932 intergenic not near genes chr3R 8637100 intergenic not near genes chr3R 8637268 intergenic not near genes chr3R_10_8635001 chr3R_8635001 RAL-861 776 chr3R 8707375 8707386 chr3R 8709795 8709827 jockey 6 2437 3.5 3.0 3.2 1.4 2452 chr3R 8707375 intergenic not near genes chr3R 8708601 intergenic not near genes chr3R 8709827 intergenic not near genes chr3R_6_8705001 chr3R_8705001 RAL-861 777 chr3R 9082059 9082073 chr3R 9082144 9082150 5 85 2.0 1.5 1.8 1.8 91 chr3R 9082059 intron pum - chr3R 9082104 intron pum - chr3R 9082150 intron pum - chr3R_5_9080001 chr3R_9080001 RAL-861 778 chr3R 9204250 9204265 chr3R 9204337 9204338 4 82 4.0 1.5 2.8 1.1 88 chr3R 9204250 intron pum - chr3R 9204294 intron pum - chr3R 9204338 intron pum - chr3R_4_9200001 chr3R_9200001 RAL-861 779 chr3R 9319574 9319606 chr3R 9320009 9320038 jockey 6 430 3.0 4.5 3.8 1.2 464 chr3R 9319574 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320038 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-861 780 chr3R 9382827 9382844 chr3R 9382952 9382967 4 124 1.0 2.5 1.8 1.4 140 chr3R 9382827 intron FER - chr3R 9382897 intron FER - chr3R 9382967 intron FER - chr3R_4_9380001 chr3R_9380001 RAL-861 781 chr3R 9853178 9853209 chr3R 9853284 9853294 4 98 3.5 1.0 2.2 1.2 116 chr3R 9853178 intron Teh1 - chr3R 9853236 intron Teh1 - chr3R 9853294 intron Teh1 - chr3R_4_9850001 chr3R_9850001 RAL-861 782 chr3R 9898789 9898818 chr3R 9898881 9898910 7 89 2.0 0.5 1.2 3.2 121 chr3R 9898789 intron Glut4EF + chr3R 9898850 intron Glut4EF + chr3R 9898910 intron Glut4EF + chr3R_7_9895001 chr3R_9895001 RAL-861 783 chr3R 10073799 10073804 chr3R 10073888 10073913 4 104 1.0 2.0 1.5 1.6 114 chr3R 10073799 intergenic CG5361 -,nerfin-2 + chr3R 10073856 3` UTR CG5361 - chr3R 10073913 exon CG5361 - chr3R_4_10070001 chr3R_10070001 RAL-861 784 chr3R 10401906 10401922 chr3R 10402089 10402091 5 183 1.5 5.0 3.2 1.2 185 chr3R 10401906 exon mthl11 + chr3R 10401998 intron mthl11 + chr3R 10402091 exon mthl11 + chr3R_5_10400001 chr3R_10400001 RAL-861 785 chr3R 10430686 10430701 chr3R 10430775 10430790 4 88 5.5 3.5 4.5 0.7 104 chr3R 10430686 intergenic not near genes chr3R 10430738 intergenic not near genes chr3R 10430790 intergenic not near genes chr3R_4_10430001 chr3R_10430001 RAL-861 786 chr3R 10458594 10458621 chr3R 10458679 10458706 4 84 4.5 2.0 3.2 1.0 112 chr3R 10458594 intergenic not near genes chr3R 10458650 intergenic not near genes chr3R 10458706 intergenic not near genes chr3R_4_10455001 chr3R_10455001 RAL-861 787 chr3R 10507258 10507281 chr3R 10507335 10507368 6 84 3.0 2.5 2.8 1.6 110 chr3R 10507258 intergenic hth - chr3R 10507313 intergenic hth - chr3R 10507368 intergenic hth - chr3R_6_10505001 chr3R_10505001 RAL-861 788 chr3R 10563133 10563160 chr3R 10563212 10563239 6 80 1.5 0.5 1.0 3.0 106 chr3R 10563133 intron hth - chr3R 10563186 intron hth - chr3R 10563239 intron hth - chr3R_6_10560001 chr3R_10560001 RAL-861 789 chr3R 10723762 10723794 chr3R 10723854 10723886 6 91 1.5 0.5 1.0 3.0 124 chr3R 10723762 intergenic not near genes chr3R 10723824 intergenic not near genes chr3R 10723886 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-861 790 chr3R 10727642 10727679 chr3R 10727722 10727759 8 78 1.5 2.5 2.0 2.7 117 chr3R 10727642 intergenic not near genes chr3R 10727700 intergenic not near genes chr3R 10727759 intergenic not near genes chr3R_8_10725001 chr3R_10725001 RAL-861 791 chr3R 10745432 10745453 chr3R 10745511 10745540 4 84 1.5 4.0 2.8 1.1 108 chr3R 10745432 intron TkR86C - chr3R 10745486 intron TkR86C - chr3R 10745540 intron TkR86C - chr3R_4_10745001 chr3R_10745001 RAL-861 792 chr3R 10919687 10919715 chr3R 10919765 10919793 6 78 2.5 1.5 2.0 2.0 106 chr3R 10919687 intergenic not near genes chr3R 10919740 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-861 793 chr3R 10963572 10963586 chr3R 10963655 10963680 4 91 1.0 0.5 0.8 2.2 108 chr3R 10963572 intergenic not near genes chr3R 10963626 intergenic not near genes chr3R 10963680 intergenic not near genes chr3R_4_10960001 chr3R_10960001 RAL-861 794 chr3R 10987277 10987306 chr3R 10988144 10988153 7 859 2.0 2.0 2.0 2.3 876 chr3R 10987277 intron CG34114 + chr3R 10987715 intron CG34114 + chr3R 10988153 intron CG34114 + chr3R_7_10985001 chr3R_10985001 RAL-861 795 chr3R 11073641 11073662 chr3R 11073873 11073896 5 234 3.5 2.0 2.8 1.3 255 chr3R 11073641 intergenic not near genes chr3R 11073768 intergenic not near genes chr3R 11073896 intergenic not near genes chr3R_5_11070001 chr3R_11070001 RAL-861 796 chr3R 11085461 11085486 chr3R 11085538 11085562 6 77 0.0 2.0 1.0 3.0 101 chr3R 11085461 3` UTR CR44940 - chr3R 11085512 intergenic CR44940 - chr3R 11085562 intergenic CR44940 - chr3R_6_11085001 chr3R_11085001 RAL-861 797 chr3R 11149888 11149890 chr3R 11149984 11149984 5 96 4.0 4.0 4.0 1.0 96 chr3R 11149888 intergenic not near genes chr3R 11149936 intergenic not near genes chr3R 11149984 intergenic not near genes chr3R_5_11145001 chr3R_11145001 RAL-861 798 chr3R 11151436 11151444 chr3R 11151588 11151596 4 152 6.0 3.0 4.5 0.7 160 chr3R 11151436 3` UTR Ugt86Di - chr3R 11151516 3` UTR Ugt86Di - chr3R 11151596 3` UTR Ugt86Di - chr3R_4_11150001 chr3R_11150001 RAL-861 799 chr3R 11174605 11174614 chr3R 11175315 11175328 5 713 11.5 15.0 13.2 0.4 723 chr3R 11174605 exon Ugt86Dj - chr3R 11174966 intron Ugt86Dj - chr3R 11175328 exon Ugt86Dj - chr3R_5_11170001 chr3R_11170001 RAL-861 800 chr3R 11294466 11294495 chr3R 11294777 11294806 7 307 3.0 2.5 2.8 1.8 340 chr3R 11294466 intron CR31386 - chr3R 11294636 intron CR31386 - chr3R 11294806 intron CR31386 - chr3R_7_11290001 chr3R_11290001 RAL-861 801 chr3R 11518822 11518848 chr3R 11518907 11518939 7 88 3.0 2.5 2.8 1.8 117 chr3R 11518822 intergenic not near genes chr3R 11518880 intergenic not near genes chr3R 11518939 intergenic not near genes chr3R_7_11515001 chr3R_11515001 RAL-861 802 chr3R 11694732 11694747 chr3R 11694825 11694831 5 91 1.5 4.5 3.0 1.2 99 chr3R 11694732 intergenic Fer3 - chr3R 11694782 intergenic Fer3 - chr3R 11694831 intergenic not near genes chr3R_5_11690001 chr3R_11690001 RAL-861 803 chr3R 11734162 11734175 chr3R 11734281 11734294 5 119 3.0 2.0 2.5 1.4 132 chr3R 11734162 intergenic not near genes chr3R 11734228 intergenic not near genes chr3R 11734294 intergenic not near genes chr3R_5_11730001 chr3R_11730001 RAL-861 804 chr3R 11841064 11841093 chr3R 11846249 11846284 BS 4 5190 2.0 1.5 1.8 1.4 5220 chr3R 11841064 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846284 intron CG6959 - chr3R_4_11840001 chr3R_11840001 RAL-861 805 chr3R 11916437 11916454 chr3R 11916508 11916533 4 77 2.0 2.0 2.0 1.3 96 chr3R 11916437 intron Cad87A - chr3R 11916485 intron Cad87A - chr3R 11916533 intron Cad87A - chr3R_4_11915001 chr3R_11915001 RAL-861 806 chr3R 11945383 11945402 chr3R 11945481 11945499 5 98 2.5 2.0 2.2 1.6 116 chr3R 11945383 intron Cad87A - chr3R 11945441 intron Cad87A - chr3R 11945499 intron Cad87A - chr3R_5_11945001 chr3R_11945001 RAL-861 807 chr3R 11971446 11971455 chr3R 11971535 11971545 4 84 7.5 8.0 7.8 0.5 99 chr3R 11971446 3` UTR GC1 + chr3R 11971496 3` UTR GC1 + chr3R 11971545 3` UTR GC1 + chr3R_4_11970001 chr3R_11970001 RAL-861 808 chr3R 12082000 12082025 chr3R 12082074 12082101 8 73 2.5 2.0 2.2 2.5 101 chr3R 12082000 intron CG14741 - chr3R 12082050 intron CG14741 - chr3R 12082101 intron CG14741 - chr3R_8_12080001 chr3R_12080001 RAL-861 809 chr3R 12111901 12111923 chr3R 12111975 12111999 7 74 0.0 2.0 1.0 3.5 98 chr3R 12111901 intergenic dpr17 + chr3R 12111950 intergenic not near genes chr3R 12111999 intergenic not near genes chr3R_7_12110001 chr3R_12110001 RAL-861 810 chr3R 12180044 12180061 chr3R 12180129 12180147 5 85 4.5 2.5 3.5 1.1 103 chr3R 12180044 intergenic not near genes chr3R 12180096 intergenic not near genes chr3R 12180147 intergenic not near genes chr3R_5_12180001 chr3R_12180001 RAL-861 811 chr3R 12748977 12748990 chr3R 12749070 12749083 4 93 1.5 4.0 2.8 1.1 106 chr3R 12748977 intron beat-Vc - chr3R 12749030 intron beat-Vc - chr3R 12749083 intron beat-Vc - chr3R_4_12745001 chr3R_12745001 RAL-861 812 chr3R 12763124 12763145 chr3R 12763201 12763220 4 76 0.0 0.0 0.0 4.0 96 chr3R 12763124 intron beat-Vc - chr3R 12763172 intron beat-Vc - chr3R 12763220 intron beat-Vc - chr3R_4_12760001 chr3R_12760001 RAL-861 813 chr3R 13067099 13067126 chr3R 13067175 13067202 4 76 0.0 1.5 0.8 2.2 103 chr3R 13067099 intron sim + chr3R 13067150 intron sim + chr3R 13067202 intron sim + chr3R_4_13065001 chr3R_13065001 RAL-861 814 chr3R 13120776 13120796 chr3R 13120851 13120859 4 72 2.0 3.0 2.5 1.1 83 chr3R 13120776 intron timeout + chr3R 13120818 intron timeout + chr3R 13120859 intron timeout + chr3R_4_13120001 chr3R_13120001 RAL-861 815 chr3R 13135829 13135859 chr3R 13138004 13138034 pogo 5 2175 2.5 1.0 1.8 1.8 2205 chr3R 13135829 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136932 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138034 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-861 816 chr3R 13205424 13205442 chr3R 13205491 13205523 6 78 3.0 5.0 4.0 1.2 99 chr3R 13205424 intergenic not near genes chr3R 13205474 intergenic not near genes chr3R 13205523 intergenic not near genes chr3R_6_13205001 chr3R_13205001 RAL-861 817 chr3R 13206656 13206676 chr3R 13206892 13206913 7 236 2.5 3.0 2.8 1.8 257 chr3R 13206656 intergenic not near genes chr3R 13206784 intergenic not near genes chr3R 13206913 intergenic not near genes chr3R_7_13205001 chr3R_13205001 RAL-861 818 chr3R 13274227 13274249 chr3R 13274303 13274325 5 71 1.0 4.5 2.8 1.3 98 chr3R 13274227 intergenic not near genes chr3R 13274276 intergenic not near genes chr3R 13274325 intergenic not near genes chr3R_5_13270001 chr3R_13270001 RAL-861 819 chr3R 13276999 13277017 chr3R 13277087 13277106 7 87 5.0 4.0 4.5 1.3 107 chr3R 13276999 intergenic not near genes chr3R 13277052 intergenic not near genes chr3R 13277106 intergenic not near genes chr3R_7_13275001 chr3R_13275001 RAL-861 820 chr3R 13314112 13314128 chr3R 13318880 13318916 Doc 5 4778 1.0 1.0 1.0 2.5 4804 chr3R 13314112 intergenic not near genes chr3R 13316514 intergenic not near genes chr3R 13318916 intergenic CG45080 - chr3R_5_13315001 chr3R_13315001 RAL-861 821 chr3R 13380723 13380749 chr3R 13380809 13380837 8 85 3.0 2.0 2.5 2.3 114 chr3R 13380723 exon CG8870 + chr3R 13380780 exon CG8870 + chr3R 13380837 intron CG8870 + chr3R_8_13380001 chr3R_13380001 RAL-861 822 chr3R 13672941 13672977 chr3R 13673019 13673036 6 74 0.0 2.0 1.0 3.0 95 chr3R 13672941 intron Task6 - chr3R 13672988 intron Task6 - chr3R 13673036 intron Task6 - chr3R_6_13670001 chr3R_13670001 RAL-861 823 chr3R 13948237 13948258 chr3R 13948315 13948336 4 78 1.5 0.0 0.8 2.2 99 chr3R 13948237 intergenic CG31517 + chr3R 13948286 intergenic CG31517 + chr3R 13948336 intergenic CG31517 + chr3R_4_13945001 chr3R_13945001 RAL-861 824 chr3R 14067141 14067153 chr3R 14067220 14067232 5 79 3.0 1.0 2.0 1.7 91 chr3R 14067141 exon foxo + chr3R 14067186 intron foxo + chr3R 14067232 intron foxo + chr3R_5_14065001 chr3R_14065001 RAL-861 825 chr3R 14161456 14161485 chr3R 14161546 14161575 5 87 1.0 5.0 3.0 1.2 119 chr3R 14161456 intergenic not near genes chr3R 14161516 intergenic not near genes chr3R 14161575 intergenic not near genes chr3R_5_14160001 chr3R_14160001 RAL-861 826 chr3R 14246392 14246413 chr3R 14247887 14247901 jockey 5 1494 6.0 2.5 4.2 1.0 1509 chr3R 14246392 intergenic not near genes chr3R 14247146 intergenic not near genes chr3R 14247901 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-861 827 chr3R 14364070 14364092 chr3R 14364135 14364166 5 72 4.0 2.5 3.2 1.2 96 chr3R 14364070 intron NK7.1 - chr3R 14364118 intron NK7.1 - chr3R 14364166 intron NK7.1 - chr3R_5_14360001 chr3R_14360001 RAL-861 828 chr3R 14384633 14384635 chr3R 14384707 14384715 4 81 0.5 0.5 0.5 2.7 82 chr3R 14384633 intergenic not near genes chr3R 14384674 intergenic not near genes chr3R 14384715 intergenic not near genes chr3R_4_14380001 chr3R_14380001 RAL-861 829 chr3R 14514479 14514506 chr3R 14514561 14514591 7 84 2.5 1.5 2.0 2.3 112 chr3R 14514479 3` UTR Pde6 - chr3R 14514535 3` UTR Pde6 - chr3R 14514591 3` UTR Pde6 - chr3R_7_14510001 chr3R_14510001 RAL-861 830 chr3R 14579348 14579384 chr3R 14579437 14579473 11 87 0.5 1.0 0.8 6.1 125 chr3R 14579348 intron stumps + chr3R 14579410 intron stumps + chr3R 14579473 intron stumps + chr3R_11_14575001 chr3R_14575001 RAL-861 831 chr3R 14608470 14608477 chr3R 14608562 14608569 4 92 1.0 2.0 1.5 1.6 99 chr3R 14608470 intergenic stumps + chr3R 14608520 intergenic stumps + chr3R 14608569 intergenic stumps + chr3R_4_14605001 chr3R_14605001 RAL-861 832 chr3R 14963220 14963240 chr3R 14963297 14963317 5 75 4.0 2.0 3.0 1.2 97 chr3R 14963220 intergenic not near genes chr3R 14963268 intergenic not near genes chr3R 14963317 intergenic not near genes chr3R_5_14960001 chr3R_14960001 RAL-861 833 chr3R 15002404 15002406 chr3R 15002503 15002504 5 99 0.0 2.0 1.0 2.5 100 chr3R 15002404 intergenic not near genes chr3R 15002454 intergenic not near genes chr3R 15002504 intergenic not near genes chr3R_5_15000001 chr3R_15000001 RAL-861 834 chr3R 15037007 15037026 chr3R 15037087 15037110 6 81 3.5 2.5 3.0 1.5 103 chr3R 15037007 intergenic RpL10Aa + chr3R 15037058 intergenic RpL10Aa + chr3R 15037110 intergenic RpL10Aa + chr3R_6_15035001 chr3R_15035001 RAL-861 835 chr3R 15049468 15049488 chr3R 15049592 15049614 8 124 4.0 5.5 4.8 1.4 146 chr3R 15049468 intergenic not near genes chr3R 15049541 intergenic not near genes chr3R 15049614 intergenic not near genes chr3R_8_15045001 chr3R_15045001 RAL-861 836 chr3R 15075239 15075253 chr3R 15075323 15075328 4 82 1.0 0.5 0.8 2.2 89 chr3R 15075239 intron dpr9 - chr3R 15075284 intron dpr9 - chr3R 15075328 intron dpr9 - chr3R_4_15075001 chr3R_15075001 RAL-861 837 chr3R 15079811 15079838 chr3R 15080051 15080070 pogo 6 239 0.0 1.0 0.5 4.0 259 chr3R 15079811 3` UTR CG6966 - chr3R 15079940 3` UTR CG6966 - chr3R 15080070 3` UTR CG6966 - chr3R_6_15075001 chr3R_15075001 RAL-861 838 chr3R 15302229 15302258 chr3R 15302313 15302326 5 72 4.0 2.0 3.0 1.2 97 chr3R 15302229 intron Tm1 + chr3R 15302278 intron Tm1 + chr3R 15302326 intron Tm1 + chr3R_5_15300001 chr3R_15300001 RAL-861 839 chr3R 15618737 15618764 chr3R 15626211 15626238 blood 5 7474 0.5 3.0 1.8 1.8 7501 chr3R 15618737 intergenic not near genes chr3R 15622488 intergenic not near genes chr3R 15626238 intergenic not near genes chr3R_5_15620001 chr3R_15620001 RAL-861 840 chr3R 15753314 15753335 chr3R 15753390 15753415 5 79 2.0 3.0 2.5 1.4 101 chr3R 15753314 intergenic not near genes chr3R 15753364 intergenic not near genes chr3R 15753415 intergenic not near genes chr3R_5_15750001 chr3R_15750001 RAL-861 841 chr3R 15790141 15790291 chr3R 15790249 15790390 5 109 3.0 7.0 5.0 0.8 249 chr3R 15790141 exon c(3)G - chr3R 15790266 exon c(3)G - chr3R 15790390 exon c(3)G - chr3R_5_15790001 chr3R_15790001 RAL-861 842 chr3R 15790837 15790872 chr3R 15790953 15790988 5 113 9.0 8.0 8.5 0.5 151 chr3R 15790837 exon c(3)G - chr3R 15790912 intron c(3)G - chr3R 15790988 exon c(3)G - chr3R_5_15790001 chr3R_15790001 RAL-861 843 chr3R 15811503 15811529 chr3R 15811740 15811769 4 239 4.0 4.5 4.2 0.8 266 chr3R 15811503 intron alpha-Man-IIb + chr3R 15811636 intron alpha-Man-IIb + chr3R 15811769 intron,3` UTR alpha-Man-IIb +,CR45211 - chr3R_4_15810001 chr3R_15810001 RAL-861 844 chr3R 15899932 15899949 chr3R 15900231 15900259 8 306 3.5 1.0 2.2 2.5 327 chr3R 15899932 intron glob1 - chr3R 15900096 intron glob1 - chr3R 15900259 intron glob1 - chr3R_8_15900001 chr3R_15900001 RAL-861 845 chr3R 15937423 15937447 chr3R 15937510 15937533 4 84 5.5 1.0 3.2 1.0 110 chr3R 15937423 intron Sap47 + chr3R 15937478 intron Sap47 + chr3R 15937533 intron Sap47 + chr3R_4_15935001 chr3R_15935001 RAL-861 846 chr3R 16284892 16284919 chr3R 16284968 16284997 12 75 3.5 2.5 3.0 3.0 105 chr3R 16284892 intron gish + chr3R 16284944 intron gish + chr3R 16284997 intron gish + chr3R_12_16280001 chr3R_16280001 RAL-861 847 chr3R 16298889 16298899 chr3R 16298974 16298983 4 84 0.0 2.5 1.2 1.8 94 chr3R 16298889 intron gish + chr3R 16298936 intron gish + chr3R 16298983 intron gish + chr3R_4_16295001 chr3R_16295001 RAL-861 848 chr3R 16374309 16374321 chr3R 16374425 16374438 4 114 1.5 3.0 2.2 1.2 129 chr3R 16374309 intergenic ss - chr3R 16374374 intergenic ss - chr3R 16374438 3` UTR ss - chr3R_4_16370001 chr3R_16370001 RAL-861 849 chr3R 16663613 16663638 chr3R 16663687 16663700 8 74 4.5 3.0 3.8 1.7 87 chr3R 16663613 intron Ubx - chr3R 16663656 intron Ubx - chr3R 16663700 intron Ubx - chr3R_8_16660001 chr3R_16660001 RAL-861 850 chr3R 16731932 16731945 chr3R 16732012 16732019 4 78 1.0 1.0 1.0 2.0 87 chr3R 16731932 intron Ubx - chr3R 16731976 intron Ubx - chr3R 16732019 intron Ubx - chr3R_4_16730001 chr3R_16730001 RAL-861 851 chr3R 16756321 16756353 chr3R 16762512 16762544 diver 6 6191 3.0 1.0 2.0 2.0 6223 chr3R 16756321 intron bxd - chr3R 16759432 intron bxd - chr3R 16762544 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-861 852 chr3R 16779440 16779467 chr3R 16779524 16779551 9 81 1.0 3.0 2.0 3.0 111 chr3R 16779440 intergenic not near genes chr3R 16779496 intergenic not near genes chr3R 16779551 intergenic not near genes chr3R_9_16775001 chr3R_16775001 RAL-861 853 chr3R 16820265 16820272 chr3R 16820353 16820366 4 92 1.0 0.0 0.5 2.7 101 chr3R 16820265 intron abd-A - chr3R 16820316 intron abd-A - chr3R 16820366 intron abd-A - chr3R_4_16820001 chr3R_16820001 RAL-861 854 chr3R 17194412 17194429 chr3R 17194491 17194500 5 77 1.5 2.5 2.0 1.7 88 chr3R 17194412 intron Mur89F - chr3R 17194456 intron Mur89F - chr3R 17194500 intron Mur89F - chr3R_5_17190001 chr3R_17190001 RAL-861 855 chr3R 17294670 17294696 chr3R 17295098 17295124 BS 4 424 2.5 3.0 2.8 1.1 454 chr3R 17294670 intergenic not near genes chr3R 17294897 intergenic not near genes chr3R 17295124 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-861 856 chr3R 17497985 17497992 chr3R 17498071 17498078 4 86 4.0 2.0 3.0 1.0 93 chr3R 17497985 intron Dscam3 - chr3R 17498032 intron Dscam3 - chr3R 17498078 intron Dscam3 - chr3R_4_17495001 chr3R_17495001 RAL-861 857 chr3R 17845207 17845220 chr3R 17845269 17845269 7 66 2.0 4.5 3.2 1.7 62 chr3R 17845207 intron tinc + chr3R 17845238 intron tinc + chr3R 17845269 intron tinc + chr3R_7_17845001 chr3R_17845001 RAL-861 858 chr3R 17925877 17925889 chr3R 17927325 17927356 hobo 6 1458 2.5 5.5 4.0 1.2 1479 chr3R 17925877 intron cpo + chr3R 17926616 intron cpo + chr3R 17927356 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-861 859 chr3R 18112367 18112393 chr3R 18112472 18112498 4 106 0.5 1.0 0.8 2.2 131 chr3R 18112367 intron sr + chr3R 18112432 intron sr + chr3R 18112498 intron sr + chr3R_4_18110001 chr3R_18110001 RAL-861 860 chr3R 18342036 18342042 chr3R 18342093 18342120 4 69 0.5 1.5 1.0 2.0 84 chr3R 18342036 intron CG15803 - chr3R 18342078 intron CG15803 - chr3R 18342120 intron CG15803 - chr3R_4_18340001 chr3R_18340001 RAL-861 861 chr3R 18376197 18376213 chr3R 18376294 18376323 5 105 6.5 2.0 4.2 1.0 126 chr3R 18376197 5` UTR CR44946 + chr3R 18376260 5` UTR CR44946 + chr3R 18376323 5` UTR CR44946 + chr3R_5_18375001 chr3R_18375001 RAL-861 862 chr3R 18622791 18622806 chr3R 18622867 18622871 4 73 4.0 1.0 2.5 1.1 80 chr3R 18622791 intron qin + chr3R 18622831 intron qin + chr3R 18622871 intron qin + chr3R_4_18620001 chr3R_18620001 RAL-861 863 chr3R 18802130 18802159 chr3R 18802215 18802226 6 80 1.0 2.0 1.5 2.4 96 chr3R 18802130 3` UTR CG18208 - chr3R 18802178 3` UTR CG18208 - chr3R 18802226 3` UTR CG18208 - chr3R_6_18800001 chr3R_18800001 RAL-861 864 chr3R 18812077 18812104 chr3R 18812155 18812182 11 75 3.5 4.0 3.8 2.3 105 chr3R 18812077 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812182 intron CG18208 - chr3R_11_18810001 chr3R_18810001 RAL-861 865 chr3R 18860128 18860150 chr3R 18860214 18860215 4 81 3.0 0.0 1.5 1.6 87 chr3R 18860128 intergenic not near genes chr3R 18860172 intergenic not near genes chr3R 18860215 intergenic not near genes chr3R_4_18860001 chr3R_18860001 RAL-861 866 chr3R 18965202 18965229 chr3R 18965395 18965422 6 191 0.5 2.0 1.2 2.7 220 chr3R 18965202 intron,intron CG42613 +,CG43732 + chr3R 18965312 intron,intron CG42613 +,CG43732 + chr3R 18965422 intron,intron CG42613 +,CG43732 + chr3R_6_18965001 chr3R_18965001 RAL-861 867 chr3R 19013021 19013048 chr3R 19013105 19013132 6 80 3.5 2.0 2.8 1.6 111 chr3R 19013021 intron gukh + chr3R 19013076 intron gukh + chr3R 19013132 intron gukh + chr3R_6_19010001 chr3R_19010001 RAL-861 868 chr3R 19033925 19033957 chr3R 19034003 19034005 8 71 2.5 2.0 2.2 2.5 80 chr3R 19033925 intron CG6026 + chr3R 19033965 intron CG6026 + chr3R 19034005 intron CG6026 + chr3R_8_19030001 chr3R_19030001 RAL-861 869 chr3R 19140269 19140282 chr3R 19140717 19140730 5 446 4.0 4.0 4.0 1.0 461 chr3R 19140269 3` UTR Ppcs - chr3R 19140500 3` UTR Ppcs - chr3R 19140730 3` UTR Ppcs - chr3R_5_19140001 chr3R_19140001 RAL-861 870 chr3R 19140283 19140298 chr3R 19140714 19140746 7 441 1.5 4.0 2.8 1.8 463 chr3R 19140283 3` UTR Ppcs - chr3R 19140514 3` UTR Ppcs - chr3R 19140746 3` UTR Ppcs - chr3R_7_19140001 chr3R_19140001 RAL-861 871 chr3R 19148734 19148762 chr3R 19148817 19148845 8 82 3.0 2.0 2.5 2.3 111 chr3R 19148734 3` UTR CG5835 - chr3R 19148790 3` UTR CG5835 - chr3R 19148845 3` UTR CG5835 - chr3R_8_19145001 chr3R_19145001 RAL-861 872 chr3R 19290551 19290573 chr3R 19290622 19290649 5 75 2.5 3.5 3.0 1.2 98 chr3R 19290551 intergenic not near genes chr3R 19290600 intergenic not near genes chr3R 19290649 intergenic not near genes chr3R_5_19290001 chr3R_19290001 RAL-861 873 chr3R 19435512 19435543 chr3R 19435788 19435818 8 273 2.0 5.0 3.5 1.8 306 chr3R 19435512 intron CG31221 + chr3R 19435665 intron CG31221 + chr3R 19435818 intron CG31221 + chr3R_8_19435001 chr3R_19435001 RAL-861 874 chr3R 19502206 19502232 chr3R 19502275 19502280 5 66 3.0 1.0 2.0 1.7 74 chr3R 19502206 intron Dys + chr3R 19502243 intron Dys + chr3R 19502280 intron Dys + chr3R_5_19500001 chr3R_19500001 RAL-861 875 chr3R 19532213 19532249 chr3R 19532287 19532324 12 72 5.0 3.5 4.2 2.3 111 chr3R 19532213 intron Dys + chr3R 19532268 intron Dys + chr3R 19532324 intron Dys + chr3R_12_19530001 chr3R_19530001 RAL-861 876 chr3R 19550068 19550086 chr3R 19550177 19550194 6 107 8.0 3.0 5.5 0.9 126 chr3R 19550068 intron Dys + chr3R 19550131 intron Dys + chr3R 19550194 intron Dys + chr3R_6_19550001 chr3R_19550001 RAL-861 877 chr3R 19550088 19550098 chr3R 19550175 19550207 4 103 2.5 3.0 2.8 1.1 119 chr3R 19550088 intron Dys + chr3R 19550148 intron Dys + chr3R 19550207 intron Dys + chr3R_4_19550001 chr3R_19550001 RAL-861 878 chr3R 19702327 19702353 chr3R 19702409 19702435 6 82 3.0 4.0 3.5 1.3 108 chr3R 19702327 intergenic not near genes chr3R 19702381 intergenic not near genes chr3R 19702435 intergenic not near genes chr3R_6_19700001 chr3R_19700001 RAL-861 879 chr3R 19943879 19943902 chr3R 19943959 19943982 11 77 3.5 0.5 2.0 3.7 103 chr3R 19943879 intron Hs6st - chr3R 19943930 intron Hs6st - chr3R 19943982 intron Hs6st - chr3R_11_19940001 chr3R_19940001 RAL-861 880 chr3R 20008822 20008854 chr3R 20008903 20008935 5 80 0.5 3.5 2.0 1.7 113 chr3R 20008822 intergenic MED25 +,Hs6st - chr3R 20008878 intergenic MED25 +,Hs6st - chr3R 20008935 intergenic MED25 +,Hs6st - chr3R_5_20005001 chr3R_20005001 RAL-861 881 chr3R 20060634 20060654 chr3R 20060714 20060721 5 79 2.5 1.5 2.0 1.7 87 chr3R 20060634 intergenic not near genes chr3R 20060678 intergenic not near genes chr3R 20060721 intergenic not near genes chr3R_5_20060001 chr3R_20060001 RAL-861 882 chr3R 20077038 20077066 chr3R 20077124 20077152 4 86 1.0 1.5 1.2 1.8 114 chr3R 20077038 intergenic not near genes chr3R 20077095 intergenic not near genes chr3R 20077152 intergenic not near genes chr3R_4_20075001 chr3R_20075001 RAL-861 883 chr3R 20124566 20124602 chr3R 20124653 20124689 9 82 0.5 1.0 0.8 5.0 123 chr3R 20124566 intergenic not near genes chr3R 20124628 intergenic not near genes chr3R 20124689 intergenic not near genes chr3R_9_20120001 chr3R_20120001 RAL-861 884 chr3R 20195688 20195721 chr3R 20195765 20195793 8 70 1.0 3.0 2.0 2.7 105 chr3R 20195688 intergenic not near genes chr3R 20195740 intergenic not near genes chr3R 20195793 intergenic not near genes chr3R_8_20195001 chr3R_20195001 RAL-861 885 chr3R 20266528 20266538 chr3R 20272999 20273009 Burdock 4 6471 1.0 3.5 2.2 1.2 6481 chr3R 20266528 intron cic + chr3R 20269768 intron cic + chr3R 20273009 intron cic + chr3R_4_20265001 chr3R_20265001 RAL-861 886 chr3R 20411221 20411245 chr3R 20411436 20411460 6 215 0.0 3.0 1.5 2.4 239 chr3R 20411221 intron Gfrl - chr3R 20411340 intron Gfrl - chr3R 20411460 intron Gfrl - chr3R_6_20410001 chr3R_20410001 RAL-861 887 chr3R 20433101 20433121 chr3R 20433191 20433210 4 88 0.5 0.0 0.2 3.3 109 chr3R 20433101 intron Gfrl - chr3R 20433156 intron Gfrl - chr3R 20433210 intron Gfrl - chr3R_4_20430001 chr3R_20430001 RAL-861 888 chr3R 20595610 20595637 chr3R 20595820 20595827 5 202 1.5 1.0 1.2 2.3 217 chr3R 20595610 intron bon + chr3R 20595718 intron bon + chr3R 20595827 intron bon + chr3R_5_20595001 chr3R_20595001 RAL-861 889 chr3R 20722860 20722868 chr3R 20722987 20722994 5 126 5.0 1.5 3.2 1.2 134 chr3R 20722860 intergenic not near genes chr3R 20722927 intergenic not near genes chr3R 20722994 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-861 890 chr3R 20735011 20735047 chr3R 20735093 20735123 11 76 1.5 3.0 2.2 3.4 112 chr3R 20735011 intergenic not near genes chr3R 20735067 intergenic not near genes chr3R 20735123 intergenic cdc2c + chr3R_11_20735001 chr3R_20735001 RAL-861 891 chr3R 21014024 21014045 chr3R 21014088 21014123 8 74 1.0 1.0 1.0 4.0 99 chr3R 21014024 3` UTR Calx + chr3R 21014074 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_8_21010001 chr3R_21010001 RAL-861 892 chr3R 21186029 21186050 chr3R 21186127 21186150 6 96 6.5 1.5 4.0 1.2 121 chr3R 21186029 intron SNF4Agamma + chr3R 21186090 intron SNF4Agamma + chr3R 21186150 intron SNF4Agamma + chr3R_6_21185001 chr3R_21185001 RAL-861 893 chr3R 21287650 21287674 chr3R 21288002 21288025 7 347 1.5 2.0 1.8 2.5 375 chr3R 21287650 intron SIFaR - chr3R 21287838 intron SIFaR - chr3R 21288025 intron SIFaR - chr3R_7_21285001 chr3R_21285001 RAL-861 894 chr3R 21330813 21330829 chr3R 21330890 21330919 4 82 2.0 1.5 1.8 1.4 106 chr3R 21330813 intron CG16791 - chr3R 21330866 intron CG16791 - chr3R 21330919 intron CG16791 - chr3R_4_21330001 chr3R_21330001 RAL-861 895 chr3R 21494690 21494706 chr3R 21494770 21494772 6 75 1.0 1.5 1.2 2.7 82 chr3R 21494690 intergenic not near genes chr3R 21494731 intergenic not near genes chr3R 21494772 intergenic not near genes chr3R_6_21490001 chr3R_21490001 RAL-861 896 chr3R 21505222 21505247 chr3R 21505304 21505327 5 81 2.5 1.0 1.8 1.8 105 chr3R 21505222 intron C15 + chr3R 21505274 intron C15 + chr3R 21505327 intron C15 + chr3R_5_21505001 chr3R_21505001 RAL-861 897 chr3R 21609007 21609029 chr3R 21611640 21611640 NOF 6 2629 2.5 5.5 4.0 1.2 2633 chr3R 21609007 intron InR - chr3R 21610324 intron InR - chr3R 21611640 intron InR - chr3R_6_21610001 chr3R_21610001 RAL-861 898 chr3R 21631130 21631159 chr3R 21631531 21631563 8 402 2.0 1.5 1.8 2.9 433 chr3R 21631130 intron E2f - chr3R 21631346 intron E2f - chr3R 21631563 intron E2f - chr3R_8_21630001 chr3R_21630001 RAL-861 899 chr3R 21633243 21633274 chr3R 21633489 21633520 9 243 1.0 3.0 2.0 3.0 277 chr3R 21633243 intron E2f - chr3R 21633382 intron E2f - chr3R 21633520 intron E2f - chr3R_9_21630001 chr3R_21630001 RAL-861 900 chr3R 21644660 21644683 chr3R 21644843 21644866 7 181 2.0 4.0 3.0 1.8 206 chr3R 21644660 intron E2f - chr3R 21644763 intron E2f - chr3R 21644866 intron E2f - chr3R_7_21640001 chr3R_21640001 RAL-861 901 chr3R 21761123 21761152 chr3R 21768512 21768520 mdg1 6 7386 3.5 4.0 3.8 1.2 7397 chr3R 21761123 exon CG42335 + chr3R 21764822 intron CG42335 + chr3R 21768520 exon CG42335 + chr3R_6_21760001 chr3R_21760001 RAL-861 902 chr3R 21907534 21907534 chr3R 28831801 28831802 21 6924268 13.5 16.5 15.0 1.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_21_25365001 chr3R_25365001 RAL-861 903 chr3R 17389054 17389054 chr3R 21907535 21907535 4 4518481 9.0 14.0 11.5 0.3 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-861 904 chr3R 21907535 21907535 chr3R 28831801 28831803 27 6924266 13.0 16.5 14.8 1.7 6924268 chr3R 21907535 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831803 intron WASp - chr3R_27_25365001 chr3R_25365001 RAL-861 905 chr3R 9620954 9620956 chr3R 21907536 21907536 4 12286581 9.0 13.5 11.2 0.3 12286582 chr3R 9620954 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-861 906 chr3R 21907536 21907536 chr3R 28831801 28831802 26 6924266 13.5 16.5 15.0 1.6 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-861 907 chr3R 21952133 21952163 chr3R 21952218 21952248 6 80 1.0 0.0 0.5 4.0 115 chr3R 21952133 intron Eip93F + chr3R 21952190 intron Eip93F + chr3R 21952248 intron Eip93F + chr3R_6_21950001 chr3R_21950001 RAL-861 908 chr3R 21958614 21958632 chr3R 21958694 21958714 4 84 3.5 0.5 2.0 1.3 100 chr3R 21958614 intron Eip93F + chr3R 21958664 intron Eip93F + chr3R 21958714 intron Eip93F + chr3R_4_21955001 chr3R_21955001 RAL-861 909 chr3R 22116413 22116432 chr3R 22116780 22116799 6 362 0.5 0.5 0.5 4.0 386 chr3R 22116413 exon Ir94b - chr3R 22116606 exon Ir94b - chr3R 22116799 exon Ir94b - chr3R_6_22115001 chr3R_22115001 RAL-861 910 chr3R 22292474 22292502 chr3R 22292551 22292582 5 75 3.0 1.0 2.0 1.7 108 chr3R 22292474 intron SKIP + chr3R 22292528 intron SKIP + chr3R 22292582 intron SKIP + chr3R_5_22290001 chr3R_22290001 RAL-861 911 chr3R 22450547 22450570 chr3R 22453186 22453205 NOF 7 2638 4.5 3.5 4.0 1.4 2658 chr3R 22450547 intron CG34376 + chr3R 22451876 intron CG34376 + chr3R 22453205 intron CG34376 + chr3R_7_22450001 chr3R_22450001 RAL-861 912 chr3R 22492387 22492409 chr3R 22492465 22492490 4 80 2.5 2.5 2.5 1.1 103 chr3R 22492387 intergenic CG7045 + chr3R 22492438 intergenic CG7045 + chr3R 22492490 intergenic CG7045 +,CG7046 + chr3R_4_22490001 chr3R_22490001 RAL-861 913 chr3R 22538444 22538464 chr3R 22538528 22538549 4 85 1.0 1.5 1.2 1.8 105 chr3R 22538444 intron CG5326 - chr3R 22538496 intron CG5326 - chr3R 22538549 intron CG5326 - chr3R_4_22535001 chr3R_22535001 RAL-861 914 chr3R 22769093 22769126 chr3R 22769169 22769199 9 73 2.5 1.0 1.8 3.2 106 chr3R 22769093 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769146 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769199 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_9_22765001 chr3R_22765001 RAL-861 915 chr3R 22797761 22797936 chr3R 22797843 22798032 9 85 0.5 0.0 0.2 7.5 271 chr3R 22797761 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798032 intergenic not near genes chr3R_9_22795001 chr3R_22795001 RAL-861 916 chr3R 22888196 22888210 chr3R 22888468 22888481 6 269 5.5 1.5 3.5 1.3 285 chr3R 22888196 intergenic not near genes chr3R 22888338 intergenic not near genes chr3R 22888481 intergenic not near genes chr3R_6_22885001 chr3R_22885001 RAL-861 917 chr3R 22919165 22919189 chr3R 22919262 22919275 5 93 2.5 3.0 2.8 1.3 110 chr3R 22919165 intron klg + chr3R 22919220 intron klg + chr3R 22919275 intron klg + chr3R_5_22915001 chr3R_22915001 RAL-861 918 chr3R 22927868 22927901 chr3R 22927963 22927996 5 90 3.0 6.0 4.5 0.9 128 chr3R 22927868 intron klg + chr3R 22927932 intron klg + chr3R 22927996 intron klg + chr3R_5_22925001 chr3R_22925001 RAL-861 919 chr3R 22990351 22990385 chr3R 22990605 22990614 10 250 3.0 2.0 2.5 2.9 263 chr3R 22990351 intron,exon Nha2 -,Or94b + chr3R 22990482 intron,intron Nha2 -,Or94b + chr3R 22990614 intron Nha2 - chr3R_10_22990001 chr3R_22990001 RAL-861 920 chr3R 23016197 23016225 chr3R 23016274 23016302 7 76 3.0 0.0 1.5 2.8 105 chr3R 23016197 intergenic not near genes chr3R 23016250 intergenic not near genes chr3R 23016302 intergenic not near genes chr3R_7_23015001 chr3R_23015001 RAL-861 921 chr3R 23182687 23182706 chr3R 23182770 23182789 4 83 0.0 0.5 0.2 3.3 102 chr3R 23182687 intron Irk1 + chr3R 23182738 intron Irk1 + chr3R 23182789 intron Irk1 + chr3R_4_23180001 chr3R_23180001 RAL-861 922 chr3R 23342639 23342667 chr3R 23342774 23342802 11 133 2.5 4.0 3.2 2.6 163 chr3R 23342639 intron pnt - chr3R 23342720 intron pnt - chr3R 23342802 intron pnt - chr3R_11_23340001 chr3R_23340001 RAL-861 923 chr3R 23557877 23557896 chr3R 23557955 23557974 9 75 2.5 4.0 3.2 2.1 97 chr3R 23557877 intron beat-IV + chr3R 23557926 intron beat-IV + chr3R 23557974 intron beat-IV + chr3R_9_23555001 chr3R_23555001 RAL-861 924 chr3R 23608572 23608606 chr3R 23608698 23608731 10 124 4.0 4.0 4.0 2.0 159 chr3R 23608572 intron CG31145 - chr3R 23608652 intron CG31145 - chr3R 23608731 exon CG31145 - chr3R_10_23605001 chr3R_23605001 RAL-861 925 chr3R 23667905 23667917 chr3R 23675135 23675157 5 7235 30.5 20.5 25.5 0.2 7252 chr3R 23667905 intron CG31145 - chr3R 23671531 intergenic not near genes chr3R 23675157 intergenic not near genes chr3R_5_23670001 chr3R_23670001 RAL-861 926 chr3R 23676069 23676077 chr3R 23676145 23676148 5 75 0.5 3.0 1.8 1.8 79 chr3R 23676069 intergenic not near genes chr3R 23676108 intergenic not near genes chr3R 23676148 intergenic not near genes chr3R_5_23675001 chr3R_23675001 RAL-861 927 chr3R 23684713 23684730 chr3R 23685182 23685195 roo 4 471 0.5 5.0 2.8 1.1 482 chr3R 23684713 intron CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685195 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-861 928 chr3R 23820637 23820666 chr3R 23820721 23820750 9 83 4.0 1.0 2.5 2.6 113 chr3R 23820637 5` UTR CG34355 + chr3R 23820694 5` UTR CG34355 + chr3R 23820750 5` UTR CG34355 + chr3R_9_23820001 chr3R_23820001 RAL-861 929 chr3R 23944912 23944935 chr3R 23944997 23945020 7 85 3.0 3.5 3.2 1.7 108 chr3R 23944912 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945020 exon CG12268 - chr3R_7_23940001 chr3R_23940001 RAL-861 930 chr3R 24072106 24072114 chr3R 24072531 24072541 jockey 4 432 4.5 7.0 5.8 0.6 435 chr3R 24072106 intron 4EHP - chr3R 24072324 intron 4EHP - chr3R 24072541 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-861 931 chr3R 24076923 24076942 chr3R 24078390 24078409 hobo 7 1466 4.0 6.0 5.0 1.2 1486 chr3R 24076923 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078409 intron 4EHP - chr3R_7_24075001 chr3R_24075001 RAL-861 932 chr3R 24100475 24100615 chr3R 24100570 24100839 6 136 2.0 2.5 2.2 1.9 364 chr3R 24100475 intron 4EHP - chr3R 24100657 intron 4EHP - chr3R 24100839 intron 4EHP - chr3R_6_24100001 chr3R_24100001 RAL-861 933 chr3R 24207217 24207236 chr3R 24212293 24212312 flea 5 5076 3.0 2.5 2.8 1.3 5095 chr3R 24207217 intron twin - chr3R 24209764 intron twin - chr3R 24212312 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-861 934 chr3R 24624375 24624394 chr3R 24624464 24624478 4 88 1.0 4.0 2.5 1.1 103 chr3R 24624375 intron Syx18 - chr3R 24624426 intron Syx18 - chr3R 24624478 exon Syx18 - chr3R_4_24620001 chr3R_24620001 RAL-861 935 chr3R 24670170 24670192 chr3R 24670247 24670276 5 82 1.0 0.0 0.5 3.3 106 chr3R 24670170 intron slo + chr3R 24670223 intron slo + chr3R 24670276 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-861 936 chr3R 24671233 24671253 chr3R 24671296 24671307 6 66 2.0 4.0 3.0 1.5 74 chr3R 24671233 intron slo + chr3R 24671270 intron slo + chr3R 24671307 intron slo + chr3R_6_24670001 chr3R_24670001 RAL-861 937 chr3R 24728339 24728353 chr3R 24728510 24728526 5 171 4.0 1.5 2.8 1.3 187 chr3R 24728339 intron tok + chr3R 24728432 intron tok + chr3R 24728526 intron tok + chr3R_5_24725001 chr3R_24725001 RAL-861 938 chr3R 24730101 24730124 chr3R 24732474 24732487 Doc 8 2372 3.0 1.0 2.0 2.7 2386 chr3R 24730101 intron tok + chr3R 24731294 intron tok + chr3R 24732487 intron tok + chr3R_8_24730001 chr3R_24730001 RAL-861 939 chr3R 24893483 24893489 chr3R 24893561 24893569 4 79 1.0 1.0 1.0 2.0 86 chr3R 24893483 intron CG31121 - chr3R 24893526 intron CG31121 - chr3R 24893569 intron CG31121 - chr3R_4_24890001 chr3R_24890001 RAL-861 940 chr3R 24957484 24957499 chr3R 24957564 24957578 5 79 6.0 1.5 3.8 1.0 94 chr3R 24957484 intergenic not near genes chr3R 24957531 intergenic not near genes chr3R 24957578 intergenic not near genes chr3R_5_24955001 chr3R_24955001 RAL-861 941 chr3R 24957501 24957512 chr3R 24957563 24957571 5 68 3.0 1.5 2.2 1.6 70 chr3R 24957501 intergenic not near genes chr3R 24957536 intergenic not near genes chr3R 24957571 intergenic not near genes chr3R_5_24955001 chr3R_24955001 RAL-861 942 chr3R 25277678 25277700 chr3R 25277775 25277797 8 96 0.0 2.0 1.0 4.0 119 chr3R 25277678 intergenic CG10513 - chr3R 25277738 intergenic not near genes chr3R 25277797 intergenic not near genes chr3R_8_25275001 chr3R_25275001 RAL-861 943 chr3R 25302683 25302708 chr3R 25302932 25302957 9 245 2.5 5.0 3.8 1.9 274 chr3R 25302683 exon CG31370 + chr3R 25302820 exon CG31370 + chr3R 25302957 exon CG31370 + chr3R_9_25300001 chr3R_25300001 RAL-861 944 chr3R 25329003 25329008 chr3R 25329469 25329487 4 476 5.5 3.5 4.5 0.7 484 chr3R 25329003 intron CHKov1 - chr3R 25329245 5` UTR CHKov1 - chr3R 25329487 intergenic CHKov2 -,CHKov1 - chr3R_4_25325001 chr3R_25325001 RAL-861 945 chr3R 25368478 25368502 chr3R 25368596 25368620 7 115 1.0 0.0 0.5 4.7 142 chr3R 25368478 intron Fur1 - chr3R 25368549 intron Fur1 - chr3R 25368620 intron Fur1 - chr3R_7_25365001 chr3R_25365001 RAL-861 946 chr3R 25377106 25377120 chr3R 25377370 25377382 5 265 3.5 5.0 4.2 1.0 276 chr3R 25377106 intron Fur1 - chr3R 25377244 intron Fur1 - chr3R 25377382 intron Fur1 - chr3R_5_25375001 chr3R_25375001 RAL-861 947 chr3R 25422067 25422094 chr3R 25422148 25422152 4 71 1.5 1.5 1.5 1.6 85 chr3R 25422067 intron Fur1 - chr3R 25422110 intron Fur1 - chr3R 25422152 intron Fur1 - chr3R_4_25420001 chr3R_25420001 RAL-861 948 chr3R 25689125 25689164 chr3R 25689233 25689262 10 103 1.0 2.0 1.5 4.0 137 chr3R 25689125 intergenic not near genes chr3R 25689194 intergenic not near genes chr3R 25689262 intergenic not near genes chr3R_10_25685001 chr3R_25685001 RAL-861 949 chr3R 25765889 25765912 chr3R 25765957 25765965 9 69 1.5 3.0 2.2 2.8 76 chr3R 25765889 intergenic not near genes chr3R 25765927 intergenic not near genes chr3R 25765965 intergenic not near genes chr3R_9_25765001 chr3R_25765001 RAL-861 950 chr3R 25801268 25801291 chr3R 25802252 25802271 6 983 1.0 3.5 2.2 1.9 1003 chr3R 25801268 intergenic not near genes chr3R 25801770 intergenic not near genes chr3R 25802271 intergenic not near genes chr3R_6_25800001 chr3R_25800001 RAL-861 951 chr3R 25832692 25832723 chr3R 25841874 25841884 roo 6 9175 3.5 2.5 3.0 1.5 9192 chr3R 25832692 exon alpha4GT2 + chr3R 25837288 intron alpha4GT2 + chr3R 25841884 exon alpha4GT2 + chr3R_6_25835001 chr3R_25835001 RAL-861 952 chr3R 26015699 26015730 chr3R 26015786 26015800 7 83 4.0 1.5 2.8 1.8 101 chr3R 26015699 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R 26015750 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R 26015800 3` UTR,5` UTR Kaz-m1 +,CR45040 + chr3R_7_26015001 chr3R_26015001 RAL-861 953 chr3R 26093846 26093863 chr3R 26093923 26093941 5 77 4.0 3.5 3.8 1.0 95 chr3R 26093846 intron dys - chr3R 26093894 intron dys - chr3R 26093941 intron dys - chr3R_5_26090001 chr3R_26090001 RAL-861 954 chr3R 26104077 26104099 chr3R 26105157 26105178 6 1082 17.0 8.5 12.8 0.4 1101 chr3R 26104077 intergenic not near genes chr3R 26104628 intergenic not near genes chr3R 26105178 intergenic not near genes chr3R_6_26100001 chr3R_26100001 RAL-861 955 chr3R 26126268 26126291 chr3R 26126373 26126396 8 102 3.0 2.0 2.5 2.3 128 chr3R 26126268 intron CG31324 + chr3R 26126332 intron CG31324 + chr3R 26126396 intron CG31324 + chr3R_8_26125001 chr3R_26125001 RAL-861 956 chr3R 26166172 26166201 chr3R 26166258 26166286 4 85 2.5 1.5 2.0 1.3 114 chr3R 26166172 intergenic not near genes chr3R 26166229 intergenic not near genes chr3R 26166286 intergenic not near genes chr3R_4_26165001 chr3R_26165001 RAL-861 957 chr3R 26265827 26265848 chr3R 26265915 26265936 6 86 0.0 3.0 1.5 2.4 109 chr3R 26265827 intron CG6154 + chr3R 26265882 intron CG6154 + chr3R 26265936 intron CG6154 + chr3R_6_26265001 chr3R_26265001 RAL-861 958 chr3R 26292107 26292141 chr3R 26292185 26292202 7 76 1.5 2.5 2.0 2.3 95 chr3R 26292107 intergenic not near genes chr3R 26292154 intergenic not near genes chr3R 26292202 intergenic not near genes chr3R_7_26290001 chr3R_26290001 RAL-861 959 chr3R 26314657 26314678 chr3R 26314802 26314823 4 144 2.0 1.5 1.8 1.4 166 chr3R 26314657 intergenic not near genes chr3R 26314740 intergenic not near genes chr3R 26314823 intergenic not near genes chr3R_4_26310001 chr3R_26310001 RAL-861 960 chr3R 26325684 26325710 chr3R 26325772 26325797 11 86 3.0 2.5 2.8 2.9 113 chr3R 26325684 intron CG33970 + chr3R 26325740 intron CG33970 + chr3R 26325797 intron CG33970 + chr3R_11_26325001 chr3R_26325001 RAL-861 961 chr3R 26376322 26376357 chr3R 26385482 26385496 roo 7 9152 1.0 0.5 0.8 3.9 9174 chr3R 26376322 intergenic not near genes chr3R 26380909 intergenic not near genes chr3R 26385496 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-861 962 chr3R 26425876 26425909 chr3R 26425959 26425993 7 80 3.5 1.0 2.2 2.2 117 chr3R 26425876 intron CR31084 + chr3R 26425934 intron CR31084 + chr3R 26425993 intron CR31084 + chr3R_7_26425001 chr3R_26425001 RAL-861 963 chr3R 26450531 26450541 chr3R 26450617 26450639 4 95 1.5 0.0 0.8 2.2 108 chr3R 26450531 exon Hex-t1 + chr3R 26450585 3` UTR Hex-t1 + chr3R 26450639 intergenic Hex-t2 +,Hex-t1 + chr3R_4_26450001 chr3R_26450001 RAL-861 964 chr3R 26553213 26553240 chr3R 26553717 26553725 9 496 1.5 2.5 2.0 3.0 512 chr3R 26553213 intron scrib + chr3R 26553469 intron scrib + chr3R 26553725 intron scrib + chr3R_9_26550001 chr3R_26550001 RAL-861 965 chr3R 26558328 26558359 chr3R 26565640 26565671 Stalker4 10 7306 1.0 3.0 2.0 3.3 7343 chr3R 26558328 intron scrib + chr3R 26562000 intron scrib + chr3R 26565671 intron scrib + chr3R_10_26560001 chr3R_26560001 RAL-861 966 chr3R 26607739 26607754 chr3R 26607815 26607830 4 76 7.5 2.0 4.8 0.7 91 chr3R 26607739 5` UTR CR44951 + chr3R 26607784 5` UTR CR44951 + chr3R 26607830 5` UTR CR44951 + chr3R_4_26605001 chr3R_26605001 RAL-861 967 chr3R 26642728 26642762 chr3R 26643121 26643151 jockey 6 392 2.0 5.0 3.5 1.3 423 chr3R 26642728 intergenic not near genes chr3R 26642940 intergenic not near genes chr3R 26643151 intergenic not near genes chr3R_6_26640001 chr3R_26640001 RAL-861 968 chr3R 26660657 26660673 chr3R 26660731 26660756 5 81 3.0 3.5 3.2 1.2 99 chr3R 26660657 intron beat-VII - chr3R 26660706 intron beat-VII - chr3R 26660756 intron beat-VII - chr3R_5_26660001 chr3R_26660001 RAL-861 969 chr3R 26770245 26770271 chr3R 26770318 26770345 7 70 1.5 2.5 2.0 2.3 100 chr3R 26770245 intergenic CR45563 + chr3R 26770295 intergenic CR45563 + chr3R 26770345 intergenic not near genes chr3R_7_26770001 chr3R_26770001 RAL-861 970 chr3R 26810561 26810586 chr3R 26811046 26811070 roo 5 485 0.5 5.0 2.8 1.3 509 chr3R 26810561 intron Tl + chr3R 26810816 intron Tl + chr3R 26811070 intron Tl + chr3R_5_26810001 chr3R_26810001 RAL-861 971 chr3R 26854781 26854807 chr3R 26855287 26855314 5 505 2.5 4.0 3.2 1.2 533 chr3R 26854781 intron Lerp - chr3R 26855048 intron Lerp - chr3R 26855314 intron Lerp - chr3R_5_26855001 chr3R_26855001 RAL-861 972 chr3R 26857885 26857908 chr3R 26857972 26857979 5 81 3.5 3.5 3.5 1.1 94 chr3R 26857885 intron Lerp - chr3R 26857932 intron Lerp - chr3R 26857979 intron Lerp - chr3R_5_26855001 chr3R_26855001 RAL-861 973 chr3R 27140519 27140534 chr3R 27148129 27148144 412 5 7610 8.5 5.0 6.8 0.6 7625 chr3R 27140519 intron CG6051 - chr3R 27144332 intron CG6051 - chr3R 27148144 intron CG6051 - chr3R_5_27140001 chr3R_27140001 RAL-861 974 chr3R 27241401 27241425 chr3R 27244706 27244725 5 3303 26.5 26.0 26.2 0.2 3324 chr3R 27241401 exon CG17991 + chr3R 27243063 exon CG18766 - chr3R 27244725 intron CG18766 - chr3R_5_27240001 chr3R_27240001 RAL-861 975 chr3R 27300873 27300877 chr3R 27300956 27300969 6 89 2.0 3.5 2.8 1.6 96 chr3R 27300873 intron CG3339 - chr3R 27300921 intron CG3339 - chr3R 27300969 intron CG3339 - chr3R_6_27300001 chr3R_27300001 RAL-861 976 chr3R 27393675 27393704 chr3R 27393957 27393986 9 281 3.0 2.5 2.8 2.4 311 chr3R 27393675 intron side - chr3R 27393830 intron side - chr3R 27393986 intron side - chr3R_9_27390001 chr3R_27390001 RAL-861 977 chr3R 27492384 27492402 chr3R 27492471 27492472 5 83 1.0 1.0 1.0 2.5 88 chr3R 27492384 intergenic not near genes chr3R 27492428 intergenic not near genes chr3R 27492472 intergenic not near genes chr3R_5_27490001 chr3R_27490001 RAL-861 978 chr3R 27595054 27595076 chr3R 27595136 27595159 9 82 4.0 3.0 3.5 2.0 105 chr3R 27595054 intron CG5639 - chr3R 27595106 intron CG5639 - chr3R 27595159 intron CG5639 - chr3R_9_27595001 chr3R_27595001 RAL-861 979 chr3R 27619725 27619729 chr3R 27619818 27619844 6 107 2.0 3.5 2.8 1.6 119 chr3R 27619725 intron Tusp + chr3R 27619784 intron Tusp + chr3R 27619844 intron Tusp + chr3R_6_27615001 chr3R_27615001 RAL-861 980 chr3R 27799941 27799962 chr3R 27800023 27800029 4 74 1.0 1.0 1.0 2.0 88 chr3R 27799941 intron CG34353 - chr3R 27799985 intron CG34353 - chr3R 27800029 intron CG34353 - chr3R_4_27795001 chr3R_27795001 RAL-861 981 chr3R 28035491 28035515 chr3R 28035568 28035592 5 75 0.0 3.5 1.8 1.8 101 chr3R 28035491 intron CG34362 + chr3R 28035542 intron CG34362 + chr3R 28035592 intron CG34362 + chr3R_5_28035001 chr3R_28035001 RAL-861 982 chr3R 28068498 28068519 chr3R 28073933 28073961 I-element 4 5440 0.5 1.0 0.8 2.2 5463 chr3R 28068498 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073961 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-861 983 chr3R 28102593 28102598 chr3R 28102812 28102836 4 231 4.0 5.5 4.8 0.7 243 chr3R 28102593 intergenic not near genes chr3R 28102714 intergenic not near genes chr3R 28102836 intergenic not near genes chr3R_4_28100001 chr3R_28100001 RAL-861 984 chr3R 28118591 28118881 chr3R 28118707 28118962 17 108 1.5 0.5 1.0 8.5 371 chr3R 28118591 intergenic not near genes chr3R 28118776 intergenic not near genes chr3R 28118962 intergenic not near genes chr3R_17_28115001 chr3R_28115001 RAL-861 985 chr3R 28130076 28130094 chr3R 28130190 28130202 5 113 2.5 1.0 1.8 1.8 126 chr3R 28130076 intergenic not near genes chr3R 28130139 intergenic not near genes chr3R 28130202 intergenic not near genes chr3R_5_28130001 chr3R_28130001 RAL-861 986 chr3R 28169856 28169876 chr3R 28170029 28170062 6 182 2.0 0.5 1.2 2.7 206 chr3R 28169856 intron CG34354 + chr3R 28169959 intron CG34354 + chr3R 28170062 intron CG34354 + chr3R_6_28165001 chr3R_28165001 RAL-861 987 chr3R 28253340 28253355 chr3R 28255847 28255865 jockey 7 2509 4.5 2.0 3.2 1.7 2525 chr3R 28253340 intergenic not near genes chr3R 28254602 intergenic not near genes chr3R 28255865 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-861 988 chr3R 28276675 28276700 chr3R 28276762 28276787 6 84 1.0 2.0 1.5 2.4 112 chr3R 28276675 intergenic not near genes chr3R 28276731 intergenic not near genes chr3R 28276787 intergenic not near genes chr3R_6_28275001 chr3R_28275001 RAL-861 989 chr3R 28425188 28425216 chr3R 28425266 28425294 11 74 0.5 3.0 1.8 3.9 106 chr3R 28425188 intron beat-VI + chr3R 28425241 intron beat-VI + chr3R 28425294 intron beat-VI + chr3R_11_28425001 chr3R_28425001 RAL-861 990 chr3R 21907534 21907536 chr3R 28831798 28831802 62 6924266 13.5 17.5 15.5 3.8 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_62_25365001 chr3R_25365001 RAL-861 991 chr3R 29079383 29079416 chr3R 29080755 29080782 NOF 6 1371 4.5 2.5 3.5 1.3 1399 chr3R 29079383 intron CG11873 + chr3R 29080082 intron CG11873 + chr3R 29080782 intron CG11873 + chr3R_6_29080001 chr3R_29080001 RAL-861 992 chr3R 29213060 29213091 chr3R 29213143 29213172 9 82 2.0 5.5 3.8 1.9 112 chr3R 29213060 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213172 intergenic not near genes chr3R_9_29210001 chr3R_29210001 RAL-861 993 chr3R 29237248 29237261 chr3R 29239269 29239282 5 2020 19.0 5.0 12.0 0.4 2034 chr3R 29237248 exon CG11951 - chr3R 29238265 intron CG11951 - chr3R 29239282 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-861 994 chr3R 29257574 29257593 chr3R 29257827 29257831 4 249 0.0 0.0 0.0 4.0 257 chr3R 29257574 intergenic CG45544 + chr3R 29257702 intergenic CG45544 + chr3R 29257831 intergenic CG45544 + chr3R_4_29255001 chr3R_29255001 RAL-861 995 chr3R 29329173 29329191 chr3R 29329515 29329534 4 342 2.0 1.0 1.5 1.6 361 chr3R 29329173 intergenic not near genes chr3R 29329354 intergenic not near genes chr3R 29329534 intergenic not near genes chr3R_4_29325001 chr3R_29325001 RAL-861 996 chr3R 29340597 29340611 chr3R 29340674 29340688 5 77 1.5 3.0 2.2 1.6 91 chr3R 29340597 intergenic not near genes chr3R 29340642 intergenic not near genes chr3R 29340688 intergenic not near genes chr3R_5_29340001 chr3R_29340001 RAL-861 997 chr3R 29384848 29384877 chr3R 29384972 29385001 5 122 2.5 1.5 2.0 1.7 153 chr3R 29384848 intron Ptp99A + chr3R 29384924 intron Ptp99A + chr3R 29385001 intron Ptp99A + chr3R_5_29380001 chr3R_29380001 RAL-861 998 chr3R 29472013 29472027 chr3R 29472103 29472116 4 91 7.0 3.5 5.2 0.6 103 chr3R 29472013 intron Ptp99A + chr3R 29472064 intron Ptp99A + chr3R 29472116 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-861 999 chr3R 29539444 29539457 chr3R 29539507 29539533 5 71 2.0 0.0 1.0 2.5 89 chr3R 29539444 intergenic not near genes chr3R 29539488 intergenic not near genes chr3R 29539533 intergenic not near genes chr3R_5_29535001 chr3R_29535001 RAL-861 1000 chr3R 29590377 29590391 chr3R 29590467 29590484 7 93 4.0 2.5 3.2 1.7 107 chr3R 29590377 intron CG31041 - chr3R 29590430 intron CG31041 - chr3R 29590484 intron CG31041 - chr3R_7_29590001 chr3R_29590001 RAL-861 1001 chr3R 29627560 29627592 chr3R 29627651 29627664 4 80 2.0 1.0 1.5 1.6 104 chr3R 29627560 intergenic not near genes chr3R 29627612 intergenic not near genes chr3R 29627664 intergenic not near genes chr3R_4_29625001 chr3R_29625001 RAL-861 1002 chr3R 29738264 29738297 chr3R 29739731 29739759 hobo 8 1463 2.0 2.0 2.0 2.7 1495 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739012 intron CG1969 + chr3R 29739759 5` UTR CG1969 + chr3R_8_29735001 chr3R_29735001 RAL-861 1003 chr3R 29769702 29769718 chr3R 29769766 29769787 4 73 1.5 2.5 2.0 1.3 85 chr3R 29769702 intron kay + chr3R 29769744 intron kay + chr3R 29769787 intron kay + chr3R_4_29765001 chr3R_29765001 RAL-861 1004 chr3R 29882023 29882043 chr3R 29891180 29891198 roo 4 9156 3.0 4.5 3.8 0.8 9175 chr3R 29882023 intron CG31038 + chr3R 29886610 intron CG31038 + chr3R 29891198 intron CG31038 + chr3R_4_29885001 chr3R_29885001 RAL-861 1005 chr3R 29950575 29950599 chr3R 29950652 29950668 5 70 3.5 3.5 3.5 1.1 93 chr3R 29950575 intergenic TkR99D - chr3R 29950622 intergenic TkR99D - chr3R 29950668 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-861 1006 chr3R 29963479 29963506 chr3R 29963581 29963608 9 101 0.0 2.0 1.0 4.5 129 chr3R 29963479 intron TkR99D - chr3R 29963544 intron TkR99D - chr3R 29963608 intron TkR99D - chr3R_9_29960001 chr3R_29960001 RAL-861 1007 chr3R 30051301 30051307 chr3R 30051380 30051386 5 79 1.5 0.5 1.0 2.5 85 chr3R 30051301 intron,intron CG15528 -,CR44046 + chr3R 30051344 intron,intron CG15528 -,CR44046 + chr3R 30051386 intron,intron CG15528 -,CR44046 + chr3R_5_30050001 chr3R_30050001 RAL-861 1008 chr3R 30074503 30074534 chr3R 30075009 30075024 9 502 2.5 0.5 1.5 3.6 521 chr3R 30074503 intron sima + chr3R 30074764 intron sima + chr3R 30075024 intron sima + chr3R_9_30070001 chr3R_30070001 RAL-861 1009 chr3R 30084850 30084877 chr3R 30086315 30086330 hobo 10 1462 1.5 7.5 4.5 1.8 1480 chr3R 30084850 intron sima + chr3R 30085590 intron sima + chr3R 30086330 intron sima + chr3R_10_30085001 chr3R_30085001 RAL-861 1010 chr3R 30317325 30317356 chr3R 30324917 30324941 roo 10 7591 3.0 2.0 2.5 2.9 7616 chr3R 30317325 intron hdc + chr3R 30321133 intron hdc + chr3R 30324941 intron hdc + chr3R_10_30320001 chr3R_30320001 RAL-861 1011 chr3R 30330500 30330525 chr3R 30330576 30330580 6 74 2.5 3.0 2.8 1.6 80 chr3R 30330500 intron hdc + chr3R 30330540 intron hdc + chr3R 30330580 intron hdc + chr3R_6_30330001 chr3R_30330001 RAL-861 1012 chr3R 23457295 23457308 chr3R 30410909 30410942 5 6953621 25.0 10.0 17.5 0.3 6953647 chr3R 23457295 intron CG4374 - chr3R 26934118 intron sda + chr3R 30410942 intergenic not near genes chr3R_5_26930001 chr3R_26930001 RAL-861 1013 chr3R 30440691 30440720 chr3R 30440950 30440979 9 258 3.5 4.5 4.0 1.8 288 chr3R 30440691 intron CG15537 - chr3R 30440835 intron CG15537 - chr3R 30440979 intron CG15537 - chr3R_9_30440001 chr3R_30440001 RAL-861 1014 chr3R 30471905 30471918 chr3R 30471977 30471979 4 71 0.5 5.5 3.0 1.0 74 chr3R 30471905 intron PH4alphaEFB + chr3R 30471942 intron PH4alphaEFB + chr3R 30471979 intron PH4alphaEFB + chr3R_4_30470001 chr3R_30470001 RAL-861 1015 chr3R 30480485 30480488 chr3R 30482948 30482955 jockey 5 2465 4.5 6.0 5.2 0.8 2470 chr3R 30480485 intron PH4alphaEFB + chr3R 30481720 intron PH4alphaEFB + chr3R 30482955 intron PH4alphaEFB + chr3R_5_30480001 chr3R_30480001 RAL-861 1016 chr3R 30480492 30480513 chr3R 30482943 30482981 jockey 14 2465 2.0 3.5 2.8 3.7 2489 chr3R 30480492 intron PH4alphaEFB + chr3R 30481736 intron PH4alphaEFB + chr3R 30482981 intron PH4alphaEFB + chr3R_14_30480001 chr3R_30480001 RAL-861 1017 chr3R 30495189 30495191 chr3R 30495288 30495308 4 111 3.0 3.0 3.0 1.0 119 chr3R 30495189 intron PH4alphaMP - chr3R 30495248 intron PH4alphaMP - chr3R 30495308 intron PH4alphaMP - chr3R_4_30495001 chr3R_30495001 RAL-861 1018 chr3R 30592508 30592538 chr3R 30592613 30592648 10 105 1.5 2.5 2.0 3.3 140 chr3R 30592508 intergenic CG2246 - chr3R 30592578 intergenic CG2246 - chr3R 30592648 intergenic CG2246 - chr3R_10_30590001 chr3R_30590001 RAL-861 1019 chr3R 30627608 30627637 chr3R 30627686 30627717 12 77 7.5 4.5 6.0 1.7 109 chr3R 30627608 exon CG2267 - chr3R 30627662 exon CG2267 - chr3R 30627717 exon CG2267 - chr3R_12_30625001 chr3R_30625001 RAL-861 1020 chr3R 30679517 30679552 chr3R 30686986 30687021 blood 10 7468 3.0 2.0 2.5 2.9 7504 chr3R 30679517 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_10_30680001 chr3R_30680001 RAL-861 1021 chr3R 30690167 30690186 chr3R 30690251 30690267 7 82 2.5 6.0 4.2 1.3 100 chr3R 30690167 intergenic Spn100A + chr3R 30690217 intergenic Spn100A + chr3R 30690267 intergenic Spn100A + chr3R_7_30690001 chr3R_30690001 RAL-861 1022 chr3R 30900538 30900569 chr3R 30901671 30901703 6 1132 2.5 0.5 1.5 2.4 1165 chr3R 30900538 3` UTR Cyp4c3 + chr3R 30901120 intron CG33483 - chr3R 30901703 intron CG33483 - chr3R_6_30900001 chr3R_30900001 RAL-861 1023 chr3R 31042116 31042144 chr3R 31042203 31042214 7 82 2.5 4.5 3.5 1.6 98 chr3R 31042116 intron CanA1 + chr3R 31042165 intron CanA1 + chr3R 31042214 intron CanA1 + chr3R_7_31040001 chr3R_31040001 RAL-861 1024 chr3R 31067043 31067049 chr3R 31067160 31067176 5 123 2.0 2.5 2.2 1.6 133 chr3R 31067043 intron Sox100B + chr3R 31067110 intron Sox100B + chr3R 31067176 intron Sox100B + chr3R_5_31065001 chr3R_31065001 RAL-861 1025 chr3R 31074237 31074259 chr3R 31081835 31081857 springer 5 7595 1.0 5.5 3.2 1.2 7620 chr3R 31074237 intron Sox100B + chr3R 31078047 intron Sox100B + chr3R 31081857 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-861 1026 chr3R 31146761 31146777 chr3R 31146837 31146846 6 75 2.0 7.5 4.8 1.0 85 chr3R 31146761 intron Gycbeta100B + chr3R 31146804 intron Gycbeta100B + chr3R 31146846 intron Gycbeta100B + chr3R_6_31145001 chr3R_31145001 RAL-861 1027 chr3R 31274377 31274393 chr3R 31274455 31274470 4 77 2.5 8.0 5.2 0.6 93 chr3R 31274377 intergenic not near genes chr3R 31274424 intergenic not near genes chr3R 31274470 intergenic not near genes chr3R_4_31270001 chr3R_31270001 RAL-861 1028 chr3R 31279372 31279408 chr3R 31285563 31285598 diver 5 6189 2.5 1.5 2.0 1.7 6226 chr3R 31279372 intergenic not near genes chr3R 31282485 intergenic not near genes chr3R 31285598 intergenic not near genes chr3R_5_31280001 chr3R_31280001 RAL-861 1029 chr3R 31348068 31348091 chr3R 31348144 31348168 7 77 3.0 5.0 4.0 1.4 100 chr3R 31348068 intron CG34347 + chr3R 31348118 intron CG34347 + chr3R 31348168 intron CG34347 + chr3R_7_31345001 chr3R_31345001 RAL-861 1030 chr3R 31413087 31413121 chr3R 31418287 31418321 copia 14 5200 1.0 0.5 0.8 7.8 5234 chr3R 31413087 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418321 intron Gprk2 + chr3R_14_31415001 chr3R_31415001 RAL-861 1031 chr3R 31426883 31426912 chr3R 31426975 31426986 4 87 4.0 3.0 3.5 0.9 103 chr3R 31426883 intron Gprk2 + chr3R 31426934 intron Gprk2 + chr3R 31426986 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 RAL-861 1032 chr3R 31630063 31630086 chr3R 31630168 31630180 5 103 3.5 4.0 3.8 1.0 117 chr3R 31630063 intron kek6 + chr3R 31630122 intron kek6 + chr3R 31630180 intron kek6 + chr3R_5_31630001 chr3R_31630001 RAL-861 1033 chr3R 31691530 31691564 chr3R 31696296 31696327 Doc 7 4764 2.5 6.0 4.2 1.3 4797 chr3R 31691530 intergenic not near genes chr3R 31693928 intergenic not near genes chr3R 31696327 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-861 1034 chr3R 31915505 31915518 chr3R 31915589 31915624 7 100 2.5 1.0 1.8 2.5 119 chr3R 31915505 intron heph - chr3R 31915564 intron heph - chr3R 31915624 intron heph - chr3R_7_31915001 chr3R_31915001 RAL-861 1035 chr3R 31997991 31998023 chr3R 32005460 32005493 blood 13 7468 2.0 3.5 2.8 3.4 7502 chr3R 31997991 intron heph - chr3R 32001742 intron heph - chr3R 32005493 intron heph - chr3R_13_32000001 chr3R_32000001 RAL-861 1036 chr4 671617 671636 chr4 680187 680206 Tirant 8 8577 6.0 5.0 5.5 1.2 8589 chr4 671617 intron CG11360 + chr4 675912 intron CG11360 + chr4 680206 intron CG11360 + chr4_8_675001 chr4_675001 RAL-861 1037 chrX 428421 428443 chrX 434602 434605 3S18 4 6178 5.5 0.5 3.0 1.0 6184 chrX 428421 intron CG32816 - chrX 431513 intron CG32816 - chrX 434605 intron CG32816 - chrX_4_430001 chrX_430001 RAL-861 1038 chrX 494603 494638 chrX 494695 494728 5 91 1.0 2.0 1.5 2.0 125 chrX 494603 intergenic CG17778 + chrX 494666 5` UTR CG17778 + chrX 494728 intron CG17778 + chrX_5_490001 chrX_490001 RAL-861 1039 chrX 547630 547662 chrX 547874 547889 9 238 2.5 2.5 2.5 2.6 259 chrX 547630 intron Appl + chrX 547760 intron Appl + chrX 547889 intron Appl + chrX_9_545001 chrX_545001 RAL-861 1040 chrX 561572 561604 chrX 561668 561675 5 87 0.5 3.0 1.8 1.8 103 chrX 561572 intron Appl + chrX 561624 intron Appl + chrX 561675 intron Appl + chrX_5_560001 chrX_560001 RAL-861 1041 chrX 670268 670282 chrX 670347 670358 7 78 0.5 0.5 0.5 4.7 90 chrX 670268 intergenic not near genes chrX 670313 intergenic not near genes chrX 670358 intergenic not near genes chrX_7_670001 chrX_670001 RAL-861 1042 chrX 680841 680868 chrX 680924 680942 8 77 0.5 3.0 1.8 2.9 101 chrX 680841 intergenic not near genes chrX 680892 intergenic not near genes chrX 680942 intergenic not near genes chrX_8_680001 chrX_680001 RAL-861 1043 chrX 695313 695324 chrX 695371 695400 6 72 1.0 2.0 1.5 2.4 87 chrX 695313 intron sdk + chrX 695356 intron sdk + chrX 695400 intron sdk + chrX_6_695001 chrX_695001 RAL-861 1044 chrX 802304 802321 chrX 802372 802398 9 70 0.5 3.5 2.0 3.0 94 chrX 802304 exon CG13359 - chrX 802351 exon CG13359 - chrX 802398 exon CG13359 - chrX_9_800001 chrX_800001 RAL-861 1045 chrX 827617 827630 chrX 835409 835422 roo 4 7792 2.5 2.5 2.5 1.1 7805 chrX 827617 intron CG43867 - chrX 831520 intron CG43867 - chrX 835422 intron CG43867 - chrX_4_830001 chrX_830001 RAL-861 1046 chrX 906702 906719 chrX 908491 908508 S-element 7 1788 3.0 3.5 3.2 1.7 1806 chrX 906702 intron CG43867 - chrX 907605 intron CG43867 - chrX 908508 intron CG43867 - chrX_7_905001 chrX_905001 RAL-861 1047 chrX 1053118 1053119 chrX 16983077 16983077 4 15929958 13.5 9.0 11.2 0.3 15929959 chrX 1053118 intron CR44779 + chrX 9018098 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-861 1048 chrX 1205535 1205557 chrX 1205615 1205621 5 76 0.5 4.0 2.2 1.6 86 chrX 1205535 intergenic CG11381 + chrX 1205578 intergenic CG11381 + chrX 1205621 intergenic CG11381 + chrX_5_1205001 chrX_1205001 RAL-861 1049 chrX 1402263 1402286 chrX 1402621 1402644 5 357 3.5 3.0 3.2 1.2 381 chrX 1402263 intergenic not near genes chrX 1402454 intergenic not near genes chrX 1402644 intergenic not near genes chrX_5_1400001 chrX_1400001 RAL-861 1050 chrX 1428597 1428626 chrX 1428679 1428712 6 85 0.5 5.5 3.0 1.5 115 chrX 1428597 intron futsch + chrX 1428654 intron futsch + chrX 1428712 intron futsch + chrX_6_1425001 chrX_1425001 RAL-861 1051 chrX 1518042 1518074 chrX 1523444 1523476 jockey 7 5400 3.5 4.0 3.8 1.5 5434 chrX 1518042 intergenic inc + chrX 1520759 intergenic not near genes chrX 1523476 intergenic not near genes chrX_7_1520001 chrX_1520001 RAL-861 1052 chrX 1627987 1628006 chrX 1635440 1635467 gtwin 6 7464 3.0 1.5 2.2 1.9 7480 chrX 1627987 intron,intron Mur2B -,br + chrX 1631727 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_6_1630001 chrX_1630001 RAL-861 1053 chrX 1674859 1674877 chrX 1674935 1674949 4 73 2.0 1.5 1.8 1.4 90 chrX 1674859 3` UTR CG32809 - chrX 1674904 3` UTR CG32809 - chrX 1674949 3` UTR CG32809 - chrX_4_1670001 chrX_1670001 RAL-861 1054 chrX 1790632 1790643 chrX 1790699 1790720 4 73 3.0 6.0 4.5 0.7 88 chrX 1790632 intron CG42666 + chrX 1790676 intron CG42666 + chrX 1790720 intron CG42666 + chrX_4_1790001 chrX_1790001 RAL-861 1055 chrX 2146656 2146687 chrX 2146748 2146780 8 88 2.0 2.5 2.2 2.5 124 chrX 2146656 intron Pgd + chrX 2146718 intron Pgd + chrX 2146780 intron Pgd + chrX_8_2145001 chrX_2145001 RAL-861 1056 chrX 2399838 2399858 chrX 2408188 2408211 roo 7 8350 4.0 3.5 3.8 1.5 8373 chrX 2399838 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408211 intergenic not near genes chrX_7_2400001 chrX_2400001 RAL-861 1057 chrX 2578814 2578844 chrX 2578906 2578936 6 92 3.0 3.0 3.0 1.5 122 chrX 2578814 intergenic Pdfr +,Vha36-3 - chrX 2578875 intergenic Vha36-3 -,Pdfr + chrX 2578936 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-861 1058 chrX 2694427 2694447 chrX 2694505 2694518 4 74 2.5 1.0 1.8 1.4 91 chrX 2694427 3` UTR CG2658 - chrX 2694472 3` UTR CG2658 - chrX 2694518 3` UTR CG2658 - chrX_4_2690001 chrX_2690001 RAL-861 1059 chrX 2803506 2803523 chrX 2803638 2803664 4 140 1.5 2.0 1.8 1.4 158 chrX 2803506 intron kirre + chrX 2803585 intron kirre + chrX 2803664 intron kirre + chrX_4_2800001 chrX_2800001 RAL-861 1060 chrX 2972032 2972042 chrX 2972172 2972181 4 140 2.0 2.5 2.2 1.2 149 chrX 2972032 intron,intron kirre +,rst - chrX 2972106 intron,intron kirre +,rst - chrX 2972181 intron,intron kirre +,rst - chrX_4_2970001 chrX_2970001 RAL-861 1061 chrX 3597554 3597583 chrX 3619721 3619751 roo 5 22164 2.0 1.0 1.5 2.0 22197 chrX 3597554 intron AstA-R1 + chrX 3608652 intron AstA-R1 + chrX 3619751 intron AstA-R1 + chrX_5_3605001 chrX_3605001 RAL-861 1062 chrX 3636191 3636211 chrX 3637124 3637144 7 931 3.5 3.5 3.5 1.6 953 chrX 3636191 intron AstA-R1 + chrX 3636668 intron AstA-R1 + chrX 3637144 intron AstA-R1 + chrX_7_3635001 chrX_3635001 RAL-861 1063 chrX 3842323 3842349 chrX 3842564 3842590 pogo 7 241 1.5 2.0 1.8 2.5 267 chrX 3842323 intron ec + chrX 3842456 intron ec + chrX 3842590 intron ec + chrX_7_3840001 chrX_3840001 RAL-861 1064 chrX 3881272 3881302 chrX 3881411 3881441 11 137 1.0 0.5 0.8 6.1 169 chrX 3881272 intron VhaAC39-1 + chrX 3881356 intron VhaAC39-1 + chrX 3881441 intron VhaAC39-1 + chrX_11_3880001 chrX_3880001 RAL-861 1065 chrX 3891148 3891174 chrX 3891265 3891288 5 114 2.0 4.5 3.2 1.2 140 chrX 3891148 intergenic CG42541 - chrX 3891218 intergenic CG42541 - chrX 3891288 intergenic CG42541 - chrX_5_3890001 chrX_3890001 RAL-861 1066 chrX 4396986 4397003 chrX 4397061 4397082 4 80 3.5 5.0 4.2 0.8 96 chrX 4396986 intron CR32773 - chrX 4397034 intron CR32773 - chrX 4397082 intron CR32773 - chrX_4_4395001 chrX_4395001 RAL-861 1067 chrX 4763251 4763283 chrX 4763735 4763770 Stalker4 6 485 4.0 1.5 2.8 1.6 519 chrX 4763251 intergenic not near genes chrX 4763510 intergenic not near genes chrX 4763770 intergenic not near genes chrX_6_4760001 chrX_4760001 RAL-861 1068 chrX 4792385 4792405 chrX 4792815 4792826 jockey 4 429 5.5 2.5 4.0 0.8 441 chrX 4792385 intergenic not near genes chrX 4792606 intergenic not near genes chrX 4792826 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-861 1069 chrX 4816514 4816544 chrX 4817318 4817328 5 794 3.0 1.0 2.0 1.7 814 chrX 4816514 intergenic not near genes chrX 4816921 intergenic not near genes chrX 4817328 intergenic not near genes chrX_5_4815001 chrX_4815001 RAL-861 1070 chrX 5338707 5338724 chrX 5339960 5339976 jockey 4 1253 5.5 2.0 3.8 0.8 1269 chrX 5338707 intergenic not near genes chrX 5339342 intergenic not near genes chrX 5339976 intergenic SK + chrX_4_5335001 chrX_5335001 RAL-861 1071 chrX 5350302 5350311 chrX 5350411 5350419 4 108 4.5 3.5 4.0 0.8 117 chrX 5350302 intron SK + chrX 5350360 intron SK + chrX 5350419 intron SK + chrX_4_5350001 chrX_5350001 RAL-861 1072 chrX 5377295 5377330 chrX 5377375 5377411 9 72 2.0 1.5 1.8 3.2 116 chrX 5377295 intron SK + chrX 5377353 intron SK + chrX 5377411 intron SK + chrX_9_5375001 chrX_5375001 RAL-861 1073 chrX 5473591 5473620 chrX 5473666 5473696 6 73 0.5 1.0 0.8 3.3 105 chrX 5473591 intron SPR + chrX 5473644 intron SPR + chrX 5473696 intron SPR + chrX_6_5470001 chrX_5470001 RAL-861 1074 chrX 5725042 5725056 chrX 5725135 5725152 5 99 3.5 0.0 1.8 1.8 110 chrX 5725042 intron CG32758 - chrX 5725097 intron CG32758 - chrX 5725152 intron CG32758 - chrX_5_5725001 chrX_5725001 RAL-861 1075 chrX 5883821 5883838 chrX 5884059 5884078 pogo 5 239 0.5 3.5 2.0 1.7 257 chrX 5883821 intron CR45668 - chrX 5883950 intron CR45668 - chrX 5884078 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-861 1076 chrX 6312197 6312221 chrX 6312279 6312284 5 78 0.5 3.0 1.8 1.8 87 chrX 6312197 intron CG15894 + chrX 6312240 intron CG15894 + chrX 6312284 intron CG15894 + chrX_5_6310001 chrX_6310001 RAL-861 1077 chrX 6314443 6314449 chrX 6314497 6314497 4 58 2.0 3.0 2.5 1.1 54 chrX 6314443 intron CG15894 + chrX 6314470 intron CG15894 + chrX 6314497 intron CG15894 + chrX_4_6310001 chrX_6310001 RAL-861 1078 chrX 6335223 6335242 chrX 6337732 6337752 Tirant 7 2510 0.5 6.0 3.2 1.7 2529 chrX 6335223 intergenic not near genes chrX 6336488 intergenic not near genes chrX 6337752 intergenic CG3842 + chrX_7_6335001 chrX_6335001 RAL-861 1079 chrX 6392886 6392895 chrX 6397635 6397660 Doc 7 4760 2.5 5.0 3.8 1.5 4774 chrX 6392886 intergenic not near genes chrX 6395273 intergenic not near genes chrX 6397660 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-861 1080 chrX 6562828 6562844 chrX 6571301 6571326 Tirant 8 8479 1.5 5.0 3.2 1.9 8498 chrX 6562828 intron CG34417 + chrX 6567077 intron CG34417 + chrX 6571326 intron CG34417 + chrX_8_6565001 chrX_6565001 RAL-861 1081 chrX 7023600 7023633 chrX 7030990 7031023 Tabor 10 7389 4.5 3.5 4.0 2.0 7423 chrX 7023600 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031023 intron CG12541 - chrX_10_7025001 chrX_7025001 RAL-861 1082 chrX 7072841 7072858 chrX 7073386 7073389 6 544 2.5 2.0 2.2 1.9 548 chrX 7072841 intergenic CG4607 + chrX 7073115 intergenic CG4607 + chrX 7073389 intergenic not near genes chrX_6_7070001 chrX_7070001 RAL-861 1083 chrX 7570644 7570655 chrX 7570775 7570787 5 133 1.0 1.0 1.0 2.5 143 chrX 7570644 intergenic not near genes chrX 7570716 intergenic not near genes chrX 7570787 intergenic not near genes chrX_5_7570001 chrX_7570001 RAL-861 1084 chrX 7702910 7702930 chrX 7703348 7703365 jockey 4 438 3.0 2.0 2.5 1.1 455 chrX 7702910 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703365 intron CHES-1-like - chrX_4_7700001 chrX_7700001 RAL-861 1085 chrX 7832434 7832461 chrX 7832523 7832525 4 83 1.5 0.5 1.0 2.0 91 chrX 7832434 intron CG1402 + chrX 7832480 intron CG1402 + chrX 7832525 intron CG1402 + chrX_4_7830001 chrX_7830001 RAL-861 1086 chrX 8513098 8513124 chrX 8513365 8513390 4 263 1.0 3.5 2.2 1.2 292 chrX 8513098 intron CG33181 + chrX 8513244 intron CG33181 + chrX 8513390 intron CG33181 + chrX_4_8510001 chrX_8510001 RAL-861 1087 chrX 8726184 8726196 chrX 8726279 8726293 4 96 1.5 1.5 1.5 1.6 109 chrX 8726184 intergenic CR43297 + chrX 8726238 intergenic CR43297 + chrX 8726293 intergenic CR43297 + chrX_4_8725001 chrX_8725001 RAL-861 1088 chrX 8888642 8888658 chrX 8888719 8888734 5 77 2.5 1.0 1.8 1.8 92 chrX 8888642 intron Moe - chrX 8888688 intron Moe - chrX 8888734 intron Moe - chrX_5_8885001 chrX_8885001 RAL-861 1089 chrX 8922334 8922356 chrX 8922767 8922789 jockey 4 426 3.5 2.0 2.8 1.1 455 chrX 8922334 intron rdgA + chrX 8922562 intron rdgA + chrX 8922789 intron rdgA + chrX_4_8920001 chrX_8920001 RAL-861 1090 chrX 8948759 8948786 chrX 8956269 8956291 roo 5 7509 0.0 3.0 1.5 2.0 7532 chrX 8948759 intron rdgA + chrX 8952525 intron rdgA + chrX 8956291 intron rdgA + chrX_5_8950001 chrX_8950001 RAL-861 1091 chrX 9337950 9337968 chrX 9338042 9338057 4 91 0.5 1.0 0.8 2.2 107 chrX 9337950 intron CG34449 - chrX 9338004 intron CG34449 - chrX 9338057 exon CG34449 - chrX_4_9335001 chrX_9335001 RAL-861 1092 chrX 9439128 9439140 chrX 9439320 9439332 4 192 1.0 2.0 1.5 1.6 204 chrX 9439128 intron mgl - chrX 9439230 intron mgl - chrX 9439332 intron mgl - chrX_4_9435001 chrX_9435001 RAL-861 1093 chrX 9473853 9473883 chrX 9474088 9474109 5 229 1.0 2.0 1.5 2.0 256 chrX 9473853 intron mgl - chrX 9473981 intron mgl - chrX 9474109 intron mgl - chrX_5_9470001 chrX_9470001 RAL-861 1094 chrX 9575808 9575824 chrX 9576113 9576117 mdg3 6 308 1.5 1.5 1.5 2.4 309 chrX 9575808 intron,exon CG32699 -,CG42395 - chrX 9575962 intron,intron CG32699 -,CG42395 - chrX 9576117 intron,intron CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-861 1095 chrX 9791862 9791892 chrX 9791959 9791989 4 96 1.0 0.5 0.8 2.2 127 chrX 9791862 intron CG32698 + chrX 9791926 intron CG32698 + chrX 9791989 intron CG32698 + chrX_4_9790001 chrX_9790001 RAL-861 1096 chrX 9837871 9837892 chrX 9837945 9837969 6 76 3.0 4.0 3.5 1.3 98 chrX 9837871 intron CG32698 + chrX 9837920 intron CG32698 + chrX 9837969 intron CG32698 + chrX_6_9835001 chrX_9835001 RAL-861 1097 chrX 9923399 9923421 chrX 9923485 9923512 5 90 1.5 3.5 2.5 1.4 113 chrX 9923399 intergenic not near genes chrX 9923456 intergenic not near genes chrX 9923512 intergenic not near genes chrX_5_9920001 chrX_9920001 RAL-861 1098 chrX 10147438 10147460 chrX 10147519 10147541 5 78 3.0 4.0 3.5 1.1 103 chrX 10147438 intron,intron RhoU +,CR44894 - chrX 10147490 intron,intron RhoU +,CR44894 - chrX 10147541 intron,intron RhoU +,CR44894 - chrX_5_10145001 chrX_10145001 RAL-861 1099 chrX 10367190 10367208 chrX 10367299 10367316 7 108 2.0 3.5 2.8 1.8 126 chrX 10367190 exon CG32679 - chrX 10367253 intron CG32679 - chrX 10367316 intron CG32679 - chrX_7_10365001 chrX_10365001 RAL-861 1100 chrX 10446685 10446706 chrX 10446767 10446782 5 80 3.0 2.0 2.5 1.4 97 chrX 10446685 intron CG32683 - chrX 10446734 intron CG32683 - chrX 10446782 intron CG32683 - chrX_5_10445001 chrX_10445001 RAL-861 1101 chrX 10550860 10550887 chrX 10552327 10552354 hobo 9 1466 2.5 3.5 3.0 2.2 1494 chrX 10550860 intron spri - chrX 10551607 intron spri - chrX 10552354 intron spri - chrX_9_10550001 chrX_10550001 RAL-861 1102 chrX 10811879 10811891 chrX 10811956 10811983 5 87 3.5 1.0 2.2 1.6 104 chrX 10811879 intron Imp - chrX 10811931 intron Imp - chrX 10811983 intron Imp - chrX_5_10810001 chrX_10810001 RAL-861 1103 chrX 10933935 10933943 chrX 10934023 10934031 5 88 2.5 4.0 3.2 1.2 96 chrX 10933935 intron Myo10A + chrX 10933983 intron Myo10A + chrX 10934031 intron Myo10A + chrX_5_10930001 chrX_10930001 RAL-861 1104 chrX 11633416 11633445 chrX 11640470 11640497 297 4 7053 2.5 1.0 1.8 1.4 7081 chrX 11633416 intron Ptp10D + chrX 11636956 intron Ptp10D + chrX 11640497 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-861 1105 chrX 12094041 12094066 chrX 12094133 12094158 5 87 2.0 0.5 1.2 2.3 117 chrX 12094041 intron,intron CR43960 +,Ten-a + chrX 12094100 intron,intron CR43960 +,Ten-a + chrX 12094158 intron,intron CR43960 +,Ten-a + chrX_5_12090001 chrX_12090001 RAL-861 1106 chrX 12350774 12350787 chrX 12350855 12350868 5 81 4.0 0.5 2.2 1.6 94 chrX 12350774 intergenic not near genes chrX 12350821 intergenic not near genes chrX 12350868 intergenic not near genes chrX_5_12350001 chrX_12350001 RAL-861 1107 chrX 12537555 12537569 chrX 12537631 12537645 4 76 0.0 1.5 0.8 2.2 90 chrX 12537555 intron CG43921 - chrX 12537600 intron CG43921 - chrX 12537645 intron CG43921 - chrX_4_12535001 chrX_12535001 RAL-861 1108 chrX 13061358 13061374 chrX 13061469 13061477 6 109 1.5 3.5 2.5 1.7 119 chrX 13061358 intron rad + chrX 13061418 intron rad + chrX 13061477 intron rad + chrX_6_13060001 chrX_13060001 RAL-861 1109 chrX 13172350 13172381 chrX 13172425 13172457 10 71 1.5 0.5 1.0 5.0 107 chrX 13172350 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172457 intron CG34411 - chrX_10_13170001 chrX_13170001 RAL-861 1110 chrX 13429465 13429486 chrX 13430613 13430618 jockey 4 1140 2.0 1.5 1.8 1.4 1153 chrX 13429465 intergenic not near genes chrX 13430042 intergenic not near genes chrX 13430618 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-861 1111 chrX 13569957 13569971 chrX 13570044 13570057 6 87 0.0 0.0 0.0 6.0 100 chrX 13569957 intron Tango13 + chrX 13570007 intron Tango13 + chrX 13570057 intron Tango13 + chrX_6_13570001 chrX_13570001 RAL-861 1112 chrX 13754425 13754461 chrX 13754521 13754552 5 91 1.0 2.0 1.5 2.0 127 chrX 13754425 intron Pdcd4 - chrX 13754488 intron Pdcd4 - chrX 13754552 intron Pdcd4 - chrX_5_13750001 chrX_13750001 RAL-861 1113 chrX 13943276 13943302 chrX 13943367 13943393 4 90 0.0 4.0 2.0 1.3 117 chrX 13943276 intron mamo - chrX 13943334 intron mamo - chrX 13943393 intron mamo - chrX_4_13940001 chrX_13940001 RAL-861 1114 chrX 14105021 14105052 chrX 14114172 14114176 roo 5 9142 2.5 3.0 2.8 1.3 9155 chrX 14105021 intergenic not near genes chrX 14109598 intergenic not near genes chrX 14114176 5` UTR CR44657 + chrX_5_14105001 chrX_14105001 RAL-861 1115 chrX 14157598 14157620 chrX 14163248 14163277 297 5 5655 0.0 1.5 0.8 2.8 5679 chrX 14157598 intergenic not near genes chrX 14160438 intergenic not near genes chrX 14163277 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-861 1116 chrX 14531361 14531379 chrX 14531450 14531452 6 86 0.5 1.0 0.8 3.3 91 chrX 14531361 intergenic not near genes chrX 14531406 intergenic not near genes chrX 14531452 intergenic not near genes chrX_6_14530001 chrX_14530001 RAL-861 1117 chrX 14589699 14589706 chrX 14589917 14589944 pogo 4 234 0.0 1.0 0.5 2.7 245 chrX 14589699 intron CG9413 - chrX 14589822 intron CG9413 - chrX 14589944 intron CG9413 - chrX_4_14585001 chrX_14585001 RAL-861 1118 chrX 14861926 14861957 chrX 14862140 14862171 6 217 5.0 12.0 8.5 0.6 245 chrX 14861926 intron Flo2 + chrX 14862048 intron Flo2 + chrX 14862171 intron Flo2 + chrX_6_14860001 chrX_14860001 RAL-861 1119 chrX 14897819 14897851 chrX 14897903 14897935 5 83 1.0 1.5 1.2 2.3 116 chrX 14897819 intron Flo2 + chrX 14897877 intron Flo2 + chrX 14897935 intron Flo2 + chrX_5_14895001 chrX_14895001 RAL-861 1120 chrX 15276661 15276674 chrX 15276755 15276767 4 92 2.5 3.5 3.0 1.0 106 chrX 15276661 intergenic not near genes chrX 15276714 intergenic not near genes chrX 15276767 intergenic not near genes chrX_4_15275001 chrX_15275001 RAL-861 1121 chrX 15413056 15413082 chrX 15417352 15417357 Juan 5 4295 3.5 3.0 3.2 1.2 4301 chrX 15413056 intron Cngl - chrX 15415206 intron Cngl - chrX 15417357 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-861 1122 chrX 15678039 15678064 chrX 15678115 15678141 8 72 0.5 2.5 1.5 3.2 102 chrX 15678039 intergenic CG12708 + chrX 15678090 intergenic CG12708 + chrX 15678141 intergenic CG12708 + chrX_8_15675001 chrX_15675001 RAL-861 1123 chrX 15681396 15681426 chrX 15681478 15681485 10 80 2.0 1.0 1.5 4.0 89 chrX 15681396 intergenic not near genes chrX 15681440 intergenic not near genes chrX 15681485 intergenic not near genes chrX_10_15680001 chrX_15680001 RAL-861 1124 chrX 16111818 16111828 chrX 16111907 16111917 4 89 3.0 1.5 2.2 1.2 99 chrX 16111818 intergenic not near genes chrX 16111868 intergenic not near genes chrX 16111917 intergenic not near genes chrX_4_16110001 chrX_16110001 RAL-861 1125 chrX 16529425 16529442 chrX 16529536 16529553 6 111 0.0 2.5 1.2 2.7 128 chrX 16529425 intron para - chrX 16529489 intron para - chrX 16529553 intron para - chrX_6_16525001 chrX_16525001 RAL-861 1126 chrX 16689639 16689654 chrX 16689710 16689719 6 77 2.0 1.5 1.8 2.1 80 chrX 16689639 intron Sep4 - chrX 16689679 intron Sep4 - chrX 16689719 intron Sep4 - chrX_6_16685001 chrX_16685001 RAL-861 1127 chrX 17011966 17012000 chrX 17012049 17012083 6 82 2.0 3.5 2.8 1.6 117 chrX 17011966 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012083 intron CG45002 - chrX_6_17010001 chrX_17010001 RAL-861 1128 chrX 17061575 17061594 chrX 17061691 17061715 6 117 5.5 1.5 3.5 1.3 140 chrX 17061575 intron CG45002 - chrX 17061645 intron CG45002 - chrX 17061715 intron CG45002 - chrX_6_17060001 chrX_17060001 RAL-861 1129 chrX 17545016 17545025 chrX 17545098 17545104 4 81 2.5 4.0 3.2 1.0 88 chrX 17545016 intron CG43658 - chrX 17545060 intron CG43658 - chrX 17545104 intron CG43658 - chrX_4_17545001 chrX_17545001 RAL-861 1130 chrX 17615898 17615911 chrX 17616005 17616018 4 107 3.0 1.0 2.0 1.3 120 chrX 17615898 intergenic not near genes chrX 17615958 intergenic not near genes chrX 17616018 intergenic not near genes chrX_4_17615001 chrX_17615001 RAL-861 1131 chrX 17680890 17680923 chrX 17680966 17681000 9 74 2.0 1.5 1.8 3.2 110 chrX 17680890 intron chas - chrX 17680945 intron chas - chrX 17681000 intron chas - chrX_9_17680001 chrX_17680001 RAL-861 1132 chrX 13057298 13057300 chrX 19242812 19242814 5 6185514 4.5 3.5 4.0 1.0 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_5_16150001 chrX_16150001 RAL-861 1133 chrX 19500558 19500728 chrX 19500635 19500815 7 76 0.5 1.5 1.0 3.5 257 chrX 19500558 intron,intron CG14200 +,Pfrx + chrX 19500686 intron,intron CG14200 +,Pfrx + chrX 19500815 intron,intron CG14200 +,Pfrx + chrX_7_19500001 chrX_19500001 RAL-861 1134 chrX 19576559 19576586 chrX 19576637 19576663 8 77 0.5 1.5 1.0 4.0 104 chrX 19576559 intron Tao - chrX 19576611 intron Tao - chrX 19576663 intron Tao - chrX_8_19575001 chrX_19575001 RAL-861 1135 chrX 19593949 19593973 chrX 19594034 19594058 10 85 2.0 4.5 3.2 2.4 109 chrX 19593949 exon CG14205 + chrX 19594004 intron CG14205 + chrX 19594058 intron CG14205 + chrX_10_19590001 chrX_19590001 RAL-861 1136 chrX 19710074 19710104 chrX 19711860 19711890 S-element 4 1786 0.5 2.0 1.2 1.8 1816 chrX 19710074 intron meso18E - chrX 19710982 intron meso18E - chrX 19711890 intron meso18E - chrX_4_19710001 chrX_19710001 RAL-861 1137 chrX 19751227 19751258 chrX 19751308 19751340 9 77 2.0 2.5 2.2 2.8 113 chrX 19751227 intron Pmp70 + chrX 19751284 intron Pmp70 + chrX 19751340 intron Pmp70 + chrX_9_19750001 chrX_19750001 RAL-861 1138 chrX 20105198 20105230 chrX 20105301 20105333 6 106 23.5 22.5 23.0 0.2 135 chrX 20105198 intergenic not near genes chrX 20105266 intergenic not near genes chrX 20105333 intergenic not near genes chrX_6_20105001 chrX_20105001 RAL-861 1139 chrX 20144845 20144857 chrX 20145015 20145026 5 170 6.5 2.5 4.5 0.9 181 chrX 20144845 intergenic not near genes chrX 20144936 intergenic not near genes chrX 20145026 intergenic not near genes chrX_5_20140001 chrX_20140001 RAL-861 1140 chrX 20374112 20374126 chrX 20374187 20374202 4 76 0.0 5.0 2.5 1.1 90 chrX 20374112 intergenic not near genes chrX 20374157 intergenic not near genes chrX 20374202 intergenic not near genes chrX_4_20370001 chrX_20370001 RAL-861 1141 chrX 20377327 20377346 chrX 20378794 20378813 hobo 6 1467 2.0 5.5 3.8 1.2 1486 chrX 20377327 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378813 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-861 1142 chrX 20384198 20384228 chrX 20384310 20384328 6 108 0.5 3.0 1.8 2.1 130 chrX 20384198 intergenic not near genes chrX 20384263 intergenic not near genes chrX 20384328 intergenic not near genes chrX_6_20380001 chrX_20380001 RAL-861 1143 chrX 20517246 20517255 chrX 20517332 20517340 4 86 0.0 0.0 0.0 4.0 94 chrX 20517246 intron Tak1 - chrX 20517293 intron Tak1 - chrX 20517340 intron Tak1 - chrX_4_20515001 chrX_20515001 RAL-861 1144 chrX 20583723 20583753 chrX 20583894 20583924 5 170 1.5 0.0 0.8 2.8 201 chrX 20583723 intergenic not near genes chrX 20583824 intergenic not near genes chrX 20583924 intergenic not near genes chrX_5_20580001 chrX_20580001 RAL-861 1145 chrX 20836731 20836754 chrX 20844333 20844356 roo 6 7602 0.0 3.0 1.5 2.4 7625 chrX 20836731 intron shakB - chrX 20840544 intron shakB - chrX 20844356 intron shakB - chrX_6_20840001 chrX_20840001 RAL-861 1146 chrX 20940718 20940754 chrX 20942187 20942205 hobo 7 1466 4.0 2.0 3.0 1.8 1487 chrX 20940718 intergenic not near genes chrX 20941462 intergenic not near genes chrX 20942205 intergenic not near genes chrX_7_20940001 chrX_20940001 RAL-861 1147 chrX 21086146 21086162 chrX 21087175 21087175 jockey 4 1025 2.0 2.5 2.2 1.2 1029 chrX 21086146 intergenic not near genes chrX 21086660 intergenic not near genes chrX 21087175 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-861 1148 chrX 21516992 21517021 chrX 21517071 21517100 10 77 3.5 3.0 3.2 2.4 108 chrX 21516992 intron CR45082 - chrX 21517046 intron CR45082 - chrX 21517100 intron CR45082 - chrX_10_21515001 chrX_21515001 RAL-861 1149 chrX 21668260 21668279 chrX 21668345 21668364 8 82 9.0 7.5 8.2 0.9 104 chrX 21668260 intergenic not near genes chrX 21668312 intergenic not near genes chrX 21668364 intergenic not near genes chrX_8_21665001 chrX_21665001 RAL-861 1150 chrX 22478882 22478892 chrX 22479015 22479025 4 133 0.5 2.0 1.2 1.8 143 chrX 22478882 intron CG12576 - chrX 22478954 intron CG12576 - chrX 22479025 intron CG12576 - chrX_4_22475001 chrX_22475001 RAL-861 1151 chrX 22602605 22602634 chrX 22602835 22602845 6 226 0.0 1.5 0.8 3.3 240 chrX 22602605 intron Cda4 - chrX 22602725 intron Cda4 - chrX 22602845 intron Cda4 - chrX_6_22600001 chrX_22600001 RAL-861 1152 chrX 22798777 22798793 chrX 22798893 22798910 5 116 1.5 0.0 0.8 2.8 133 chrX 22798777 intergenic not near genes chrX 22798844 intergenic not near genes chrX 22798910 intergenic not near genes chrX_5_22795001 chrX_22795001 RAL-861 1153 chrX 22895736 22895752 chrX 22895852 22895863 5 116 4.0 2.0 3.0 1.2 127 chrX 22895736 intergenic not near genes chrX 22895800 intergenic not near genes chrX 22895863 intergenic not near genes chrX_5_22895001 chrX_22895001 RAL-861 1154 chrY 311344 311345 chrY 311461 311462 4 117 0.0 3.0 1.5 1.6 118 chrY 311344 intergenic not near genes chrY 311403 intergenic not near genes chrY 311462 intergenic not near genes chrY_4_310001 chrY_310001 RAL-861 1155 chrY 975805 975820 chrY 975871 975962 6 92 92.5 108.0 100.2 0.1 157 chrY 975805 intergenic not near genes chrY 975884 intergenic not near genes chrY 975962 intergenic not near genes chrY_6_975001 chrY_975001 RAL-861