SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47460 47487 chr2L 52565 52592 jockey 8 5105 2.0 2.0 2.0 2.7 5132 chr2L 47460 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52592 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-85 2 chr2L 139591 139607 chr2L 140048 140064 4 457 11.0 6.0 8.5 0.4 473 chr2L 139591 intron,exon,5` UTR CG11455 +,CG31975 -,CG31976 - chr2L 139828 intron,exon,5` UTR CG11455 +,CG31975 -,CG31976 - chr2L 140064 intron,intron,intron CG11455 +,CG31975 -,CG31976 - chr2L_4_135001 chr2L_135001 RAL-85 3 chr2L 286728 286763 chr2L 286806 286841 11 78 10.5 13.0 11.8 0.9 113 chr2L 286728 intron CG3625 - chr2L 286784 intron CG3625 - chr2L 286841 intron CG3625 - chr2L_11_285001 chr2L_285001 RAL-85 4 chr2L 297692 297719 chr2L 297791 297819 4 100 2.5 10.0 6.2 0.6 127 chr2L 297692 intergenic Pi3K21B +,Hop + chr2L 297756 intergenic Pi3K21B +,Hop + chr2L 297819 intergenic Pi3K21B +,Hop + chr2L_4_295001 chr2L_295001 RAL-85 5 chr2L 325133 325149 chr2L 325205 325226 5 74 3.0 2.5 2.8 1.3 93 chr2L 325133 intron Plc21C + chr2L 325180 intron Plc21C + chr2L 325226 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-85 6 chr2L 371449 371456 chr2L 371528 371535 4 79 1.5 2.0 1.8 1.4 86 chr2L 371449 intergenic not near genes chr2L 371492 intergenic not near genes chr2L 371535 intergenic not near genes chr2L_4_370001 chr2L_370001 RAL-85 7 chr2L 597170 597178 chr2L 597296 597314 7 122 19.0 19.0 19.0 0.3 144 chr2L 597170 intergenic not near genes chr2L 597242 intergenic not near genes chr2L 597314 intergenic not near genes chr2L_7_595001 chr2L_595001 RAL-85 8 chr2L 763596 763630 chr2L 763672 763706 11 76 8.0 6.0 7.0 1.4 110 chr2L 763596 intergenic not near genes chr2L 763651 intergenic not near genes chr2L 763706 intergenic not near genes chr2L_11_760001 chr2L_760001 RAL-85 9 chr2L 764559 764577 chr2L 764659 764677 4 100 0.5 4.0 2.2 1.2 118 chr2L 764559 intergenic not near genes chr2L 764618 intergenic not near genes chr2L 764677 intergenic not near genes chr2L_4_760001 chr2L_760001 RAL-85 10 chr2L 770463 770494 chr2L 772244 772263 Bari1 8 1776 5.0 5.5 5.2 1.3 1800 chr2L 770463 intergenic not near genes chr2L 771363 intergenic not near genes chr2L 772263 intergenic CR44614 + chr2L_8_770001 chr2L_770001 RAL-85 11 chr2L 877845 877862 chr2L 877926 877943 4 81 13.0 14.0 13.5 0.3 98 chr2L 877845 3` UTR,exon CG15824 -,ninaA + chr2L 877894 3` UTR,intron CG15824 -,ninaA + chr2L 877943 3` UTR,intron CG15824 -,ninaA + chr2L_4_875001 chr2L_875001 RAL-85 12 chr2L 931631 931662 chr2L 931710 931741 9 79 5.0 3.0 4.0 1.8 110 chr2L 931631 intron CG4341 + chr2L 931686 intron CG4341 + chr2L 931741 intron CG4341 + chr2L_9_930001 chr2L_930001 RAL-85 13 chr2L 935381 935405 chr2L 935465 935489 4 84 5.5 4.0 4.8 0.7 108 chr2L 935381 intron CG4341 + chr2L 935435 intron CG4341 + chr2L 935489 intron CG4341 + chr2L_4_935001 chr2L_935001 RAL-85 14 chr2L 1126679 1126700 chr2L 1126755 1126776 11 75 9.0 11.5 10.2 1.0 97 chr2L 1126679 intron Pino - chr2L 1126728 intron Pino - chr2L 1126776 intron Pino - chr2L_11_1125001 chr2L_1125001 RAL-85 15 chr2L 1215323 1215573 chr2L 1215435 1215649 10 87 5.5 15.0 10.2 0.9 326 chr2L 1215323 intergenic CR45346 - chr2L 1215486 intergenic CR45346 - chr2L 1215649 intergenic CR45346 - chr2L_10_1215001 chr2L_1215001 RAL-85 16 chr2L 1220132 1220153 chr2L 1227598 1227619 blood 6 7466 4.0 0.5 2.2 1.9 7487 chr2L 1220132 intron CG42329 + chr2L 1223876 intron CG42329 + chr2L 1227619 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-85 17 chr2L 1244413 1244429 chr2L 1244490 1244506 4 77 4.0 3.5 3.8 0.8 93 chr2L 1244413 intergenic not near genes chr2L 1244460 intergenic not near genes chr2L 1244506 intergenic not near genes chr2L_4_1240001 chr2L_1240001 RAL-85 18 chr2L 1261135 1261257 chr2L 1261217 1261335 8 78 0.0 0.0 0.0 8.0 200 chr2L 1261135 intron robo3 + chr2L 1261235 intron robo3 + chr2L 1261335 intron robo3 + chr2L_8_1260001 chr2L_1260001 RAL-85 19 chr2L 1312869 1312902 chr2L 1312955 1312955 5 80 1.5 2.5 2.0 1.7 86 chr2L 1312869 intergenic not near genes chr2L 1312912 intergenic not near genes chr2L 1312955 intergenic not near genes chr2L_5_1310001 chr2L_1310001 RAL-85 20 chr2L 1320290 1320311 chr2L 1320367 1320387 5 77 6.5 9.5 8.0 0.6 97 chr2L 1320290 intergenic not near genes chr2L 1320338 intergenic not near genes chr2L 1320387 intergenic not near genes chr2L_5_1320001 chr2L_1320001 RAL-85 21 chr2L 1332884 1332912 chr2L 1332972 1333001 4 89 4.0 6.0 5.0 0.7 117 chr2L 1332884 intergenic not near genes chr2L 1332942 intergenic not near genes chr2L 1333001 intergenic not near genes chr2L_4_1330001 chr2L_1330001 RAL-85 22 chr2L 1370253 1370274 chr2L 1370417 1370439 6 165 15.5 15.0 15.2 0.4 186 chr2L 1370253 intergenic not near genes chr2L 1370346 intergenic not near genes chr2L 1370439 intergenic not near genes chr2L_6_1370001 chr2L_1370001 RAL-85 23 chr2L 1570686 1570717 chr2L 1573558 1573589 F-element 5 2872 1.0 5.0 3.0 1.2 2903 chr2L 1570686 intron haf + chr2L 1572138 intron haf + chr2L 1573589 intron haf + chr2L_5_1570001 chr2L_1570001 RAL-85 24 chr2L 1687038 1687061 chr2L 1687114 1687139 6 77 7.0 11.0 9.0 0.6 101 chr2L 1687038 intron chinmo + chr2L 1687088 intron chinmo + chr2L 1687139 intron chinmo + chr2L_6_1685001 chr2L_1685001 RAL-85 25 chr2L 1711354 1711386 chr2L 1711678 1711710 mdg3 9 324 3.5 5.0 4.2 1.7 356 chr2L 1711354 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711710 3` UTR frtz - chr2L_9_1710001 chr2L_1710001 RAL-85 26 chr2L 1795462 1795477 chr2L 1795550 1795557 4 86 4.5 5.5 5.0 0.7 95 chr2L 1795462 intergenic not near genes chr2L 1795510 intergenic not near genes chr2L 1795557 intergenic not near genes chr2L_4_1795001 chr2L_1795001 RAL-85 27 chr2L 1883434 1883444 chr2L 1884014 1884023 4 580 0.0 2.0 1.0 2.0 589 chr2L 1883434 intron CG15358 - chr2L 1883728 intron CG15358 - chr2L 1884023 exon CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-85 28 chr2L 1994587 1994606 chr2L 1994816 1994836 6 230 9.5 4.0 6.8 0.8 249 chr2L 1994587 intergenic not near genes chr2L 1994712 intergenic not near genes chr2L 1994836 intergenic not near genes chr2L_6_1990001 chr2L_1990001 RAL-85 29 chr2L 1995687 1995706 chr2L 1995780 1995783 4 88 5.5 6.5 6.0 0.6 96 chr2L 1995687 intergenic not near genes chr2L 1995735 intergenic not near genes chr2L 1995783 intergenic not near genes chr2L_4_1995001 chr2L_1995001 RAL-85 30 chr2L 2100375 2100405 chr2L 2109526 2109556 roo 14 9151 1.5 2.5 2.0 4.7 9181 chr2L 2100375 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109556 intron dpr3 - chr2L_14_2100001 chr2L_2100001 RAL-85 31 chr2L 2112113 2112146 chr2L 2119775 2119808 opus 10 7661 1.5 5.0 3.2 2.4 7695 chr2L 2112113 intergenic not near genes chr2L 2115960 intergenic not near genes chr2L 2119808 intergenic not near genes chr2L_10_2115001 chr2L_2115001 RAL-85 32 chr2L 2207665 2207696 chr2L 2207746 2207777 5 79 11.5 11.5 11.5 0.4 112 chr2L 2207665 exon CG33124 - chr2L 2207721 exon CG33124 - chr2L 2207777 exon CG33124 - chr2L_5_2205001 chr2L_2205001 RAL-85 33 chr2L 2294042 2294067 chr2L 2299245 2299272 copia 4 5203 5.5 3.0 4.2 0.8 5230 chr2L 2294042 intergenic not near genes chr2L 2296657 intergenic not near genes chr2L 2299272 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-85 34 chr2L 2552739 2552766 chr2L 2552819 2552846 5 80 9.0 5.0 7.0 0.6 107 chr2L 2552739 exon CG3515 - chr2L 2552792 5` UTR CG3515 - chr2L 2552846 intergenic CG3515 - chr2L_5_2550001 chr2L_2550001 RAL-85 35 chr2L 2637227 2637262 chr2L 2637325 2637360 5 98 14.0 12.5 13.2 0.4 133 chr2L 2637227 intergenic not near genes chr2L 2637294 intergenic not near genes chr2L 2637360 intergenic not near genes chr2L_5_2635001 chr2L_2635001 RAL-85 36 chr2L 2661199 2661234 chr2L 2663037 2663072 I-element 8 1837 1.0 2.5 1.8 2.9 1873 chr2L 2661199 intergenic not near genes chr2L 2662136 intergenic not near genes chr2L 2663072 intergenic not near genes chr2L_8_2660001 chr2L_2660001 RAL-85 37 chr2L 2667632 2667658 chr2L 2667711 2667737 8 78 2.5 4.5 3.5 1.8 105 chr2L 2667632 intergenic not near genes chr2L 2667684 intergenic not near genes chr2L 2667737 intergenic not near genes chr2L_8_2665001 chr2L_2665001 RAL-85 38 chr2L 2701980 2702015 chr2L 2702068 2702102 4 84 8.0 12.0 10.0 0.4 122 chr2L 2701980 intron CG31690 + chr2L 2702041 intron CG31690 + chr2L 2702102 intron CG31690 + chr2L_4_2700001 chr2L_2700001 RAL-85 39 chr2L 2713511 2713545 chr2L 2713610 2713643 12 99 6.5 4.0 5.2 1.9 132 chr2L 2713511 intron CG31690 + chr2L 2713577 intron CG31690 + chr2L 2713643 intron CG31690 + chr2L_12_2710001 chr2L_2710001 RAL-85 40 chr2L 2975668 2975677 chr2L 2978973 2978982 4 3305 34.5 28.0 31.2 0.1 3314 chr2L 2975668 exon CG9641 - chr2L 2977325 exon CG3165 + chr2L 2978982 exon CG9643 - chr2L_4_2975001 chr2L_2975001 RAL-85 41 chr2L 3140522 3140540 chr2L 3140601 3140618 4 79 7.5 2.5 5.0 0.7 96 chr2L 3140522 intron toc - chr2L 3140570 intron toc - chr2L 3140618 intron toc - chr2L_4_3140001 chr2L_3140001 RAL-85 42 chr2L 3147281 3147303 chr2L 3147358 3147380 9 77 10.5 15.5 13.0 0.6 99 chr2L 3147281 3` UTR Mad - chr2L 3147330 3` UTR Mad - chr2L 3147380 3` UTR Mad - chr2L_9_3145001 chr2L_3145001 RAL-85 43 chr2L 3192211 3192242 chr2L 3192322 3192351 13 110 0.5 3.0 1.8 4.6 140 chr2L 3192211 exon CG34393 - chr2L 3192281 intron CG34393 - chr2L 3192351 intron CG34393 - chr2L_13_3190001 chr2L_3190001 RAL-85 44 chr2L 3291245 3291258 chr2L 3291325 3291338 4 80 3.5 8.5 6.0 0.6 93 chr2L 3291245 3` UTR CG9664 - chr2L 3291292 3` UTR CG9664 - chr2L 3291338 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-85 45 chr2L 3355429 3355449 chr2L 3355508 3355528 5 79 3.0 4.5 3.8 1.0 99 chr2L 3355429 intergenic not near genes chr2L 3355478 intergenic not near genes chr2L 3355528 intergenic not near genes chr2L_5_3355001 chr2L_3355001 RAL-85 46 chr2L 3482162 3482183 chr2L 3482252 3482273 5 90 3.5 5.0 4.2 1.0 111 chr2L 3482162 intron CG15414 - chr2L 3482218 intron CG15414 - chr2L 3482273 intron CG15414 - chr2L_5_3480001 chr2L_3480001 RAL-85 47 chr2L 3494424 3494457 chr2L 3494547 3494562 12 120 6.0 11.0 8.5 1.3 138 chr2L 3494424 3` UTR tim - chr2L 3494493 3` UTR tim - chr2L 3494562 3` UTR tim - chr2L_12_3490001 chr2L_3490001 RAL-85 48 chr2L 3508365 3508374 chr2L 3508443 3508452 4 78 0.0 3.0 1.5 1.6 87 chr2L 3508365 intergenic CR45299 +,tim - chr2L 3508408 intergenic CR45299 +,tim - chr2L 3508452 intergenic CR45299 +,tim - chr2L_4_3505001 chr2L_3505001 RAL-85 49 chr2L 3532157 3532174 chr2L 3532234 3532252 4 78 10.0 12.0 11.0 0.3 95 chr2L 3532157 intron Che-13 + chr2L 3532204 intron Che-13 + chr2L 3532252 intron Che-13 + chr2L_4_3530001 chr2L_3530001 RAL-85 50 chr2L 3891891 3891923 chr2L 3891976 3892008 4 85 6.0 5.5 5.8 0.6 117 chr2L 3891891 intron capu - chr2L 3891950 intron capu - chr2L 3892008 intron capu - chr2L_4_3890001 chr2L_3890001 RAL-85 51 chr2L 3926016 3926039 chr2L 3926115 3926137 7 99 4.5 4.5 4.5 1.3 121 chr2L 3926016 intron fred - chr2L 3926076 intron fred - chr2L 3926137 intron fred - chr2L_7_3925001 chr2L_3925001 RAL-85 52 chr2L 3999184 3999210 chr2L 3999266 3999293 5 82 10.5 10.0 10.2 0.4 109 chr2L 3999184 intergenic not near genes chr2L 3999238 intergenic not near genes chr2L 3999293 intergenic not near genes chr2L_5_3995001 chr2L_3995001 RAL-85 53 chr2L 4166386 4166411 chr2L 4166469 4166494 5 83 1.0 3.0 2.0 1.7 108 chr2L 4166386 intergenic Or24a - chr2L 4166440 intergenic Or24a - chr2L 4166494 intergenic Or24a - chr2L_5_4165001 chr2L_4165001 RAL-85 54 chr2L 4293928 4293944 chr2L 4294002 4294003 4 74 6.5 7.5 7.0 0.5 75 chr2L 4293928 intron tutl + chr2L 4293966 intron tutl + chr2L 4294003 intron tutl + chr2L_4_4290001 chr2L_4290001 RAL-85 55 chr2L 4309793 4309816 chr2L 4309878 4309901 4 85 7.5 8.0 7.8 0.5 108 chr2L 4309793 intron tutl + chr2L 4309847 intron tutl + chr2L 4309901 intron tutl + chr2L_4_4305001 chr2L_4305001 RAL-85 56 chr2L 4317883 4317912 chr2L 4317961 4317990 6 78 2.0 2.0 2.0 2.0 107 chr2L 4317883 intron tutl + chr2L 4317936 intron tutl + chr2L 4317990 intron tutl + chr2L_6_4315001 chr2L_4315001 RAL-85 57 chr2L 4342265 4342275 chr2L 4342362 4342372 4 97 1.5 5.0 3.2 1.0 107 chr2L 4342265 intron Atet + chr2L 4342318 intron Atet + chr2L 4342372 intron Atet + chr2L_4_4340001 chr2L_4340001 RAL-85 58 chr2L 4351477 4351502 chr2L 4351553 4351578 5 76 0.5 1.5 1.0 2.5 101 chr2L 4351477 intergenic CR44700 + chr2L 4351528 intergenic CR44700 + chr2L 4351578 intergenic CR44700 + chr2L_5_4350001 chr2L_4350001 RAL-85 59 chr2L 4439002 4439029 chr2L 4439088 4439114 5 86 5.0 7.5 6.2 0.7 112 chr2L 4439002 intron CG15431 - chr2L 4439058 intron CG15431 - chr2L 4439114 5` UTR CG15431 - chr2L_5_4435001 chr2L_4435001 RAL-85 60 chr2L 4601703 4601736 chr2L 4609144 4609177 mdg1 17 7440 2.5 2.0 2.2 5.3 7474 chr2L 4601703 intron dp - chr2L 4605440 intron dp - chr2L 4609177 intron dp - chr2L_17_4605001 chr2L_4605001 RAL-85 61 chr2L 4770120 4770137 chr2L 4770203 4770220 4 83 7.5 7.0 7.2 0.5 100 chr2L 4770120 intron CG15630 - chr2L 4770170 intron CG15630 - chr2L 4770220 intron CG15630 - chr2L_4_4770001 chr2L_4770001 RAL-85 62 chr2L 4819495 4819517 chr2L 4819618 4819640 7 121 1.0 3.0 2.0 2.3 145 chr2L 4819495 intergenic not near genes chr2L 4819568 intergenic not near genes chr2L 4819640 intergenic not near genes chr2L_7_4815001 chr2L_4815001 RAL-85 63 chr2L 4841069 4841104 chr2L 4841145 4841178 16 74 5.0 2.5 3.8 3.3 109 chr2L 4841069 intron CG12194 + chr2L 4841124 intron CG12194 + chr2L 4841178 exon CG12194 + chr2L_16_4840001 chr2L_4840001 RAL-85 64 chr2L 5120977 5121006 chr2L 5121071 5121100 6 94 6.0 7.0 6.5 0.8 123 chr2L 5120977 intron Msp300 + chr2L 5121038 intron Msp300 + chr2L 5121100 intron Msp300 + chr2L_6_5120001 chr2L_5120001 RAL-85 65 chr2L 5278159 5278192 chr2L 5278243 5278260 7 82 15.5 10.5 13.0 0.5 101 chr2L 5278159 exon Bsg25D - chr2L 5278210 5` UTR Bsg25D - chr2L 5278260 5` UTR Bsg25D - chr2L_7_5275001 chr2L_5275001 RAL-85 66 chr2L 5338487 5338498 chr2L 5338601 5338613 4 115 2.0 3.0 2.5 1.1 126 chr2L 5338487 intergenic fusl - chr2L 5338550 intergenic fusl - chr2L 5338613 intergenic not near genes chr2L_4_5335001 chr2L_5335001 RAL-85 67 chr2L 5455679 5455705 chr2L 5455758 5455783 11 78 12.0 5.5 8.8 1.1 104 chr2L 5455679 intergenic not near genes chr2L 5455731 intergenic not near genes chr2L 5455783 intergenic not near genes chr2L_11_5455001 chr2L_5455001 RAL-85 68 chr2L 5500041 5500073 chr2L 5500127 5500159 7 86 3.5 1.0 2.2 2.2 118 chr2L 5500041 intergenic not near genes chr2L 5500100 intergenic not near genes chr2L 5500159 intergenic not near genes chr2L_7_5500001 chr2L_5500001 RAL-85 69 chr2L 5758348 5758369 chr2L 5758590 5758611 5 243 7.5 14.5 11.0 0.4 263 chr2L 5758348 intron CG11030 + chr2L 5758480 intron CG11030 + chr2L 5758611 intron CG11030 + chr2L_5_5755001 chr2L_5755001 RAL-85 70 chr2L 5839101 5839156 chr2L 5839177 5839399 9 133 3.0 2.5 2.8 2.4 298 chr2L 5839101 intron TrissinR + chr2L 5839250 intron TrissinR + chr2L 5839399 intron TrissinR + chr2L_9_5835001 chr2L_5835001 RAL-85 71 chr2L 5942025 5942044 chr2L 5942117 5942136 5 92 10.5 10.5 10.5 0.4 111 chr2L 5942025 5` UTR CR45289 + chr2L 5942080 5` UTR CR45289 + chr2L 5942136 5` UTR CR45289 + chr2L_5_5940001 chr2L_5940001 RAL-85 72 chr2L 5993332 5993352 chr2L 5993423 5993443 6 91 9.0 9.5 9.2 0.6 111 chr2L 5993332 exon lid - chr2L 5993388 intron lid - chr2L 5993443 intron lid - chr2L_6_5990001 chr2L_5990001 RAL-85 73 chr2L 6074428 6074452 chr2L 6074559 6074585 4 133 14.5 15.5 15.0 0.2 157 chr2L 6074428 3` UTR CR43801 - chr2L 6074506 3` UTR CR43801 - chr2L 6074585 3` UTR CR43801 - chr2L_4_6070001 chr2L_6070001 RAL-85 74 chr2L 6103226 6103244 chr2L 6103303 6103321 5 77 10.5 12.0 11.2 0.4 95 chr2L 6103226 intron stai + chr2L 6103274 intron stai + chr2L 6103321 intron stai + chr2L_5_6100001 chr2L_6100001 RAL-85 75 chr2L 6130768 6130782 chr2L 6130853 6130867 5 85 6.0 2.5 4.2 1.0 99 chr2L 6130768 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130818 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130867 intergenic CG9222 +,CG42730 -,tectonic - chr2L_5_6130001 chr2L_6130001 RAL-85 76 chr2L 6129927 6129953 chr2L 6137615 6137641 6 7688 13.0 14.5 13.8 0.4 7714 chr2L 6129927 exon,5` UTR CG42730 -,tectonic - chr2L 6133784 intergenic CR45719 - chr2L 6137641 intergenic not near genes chr2L_6_6130001 chr2L_6130001 RAL-85 77 chr2L 6185441 6185471 chr2L 6185518 6185549 5 78 8.0 8.5 8.2 0.5 108 chr2L 6185441 intron CG34380 + chr2L 6185495 intron CG34380 + chr2L 6185549 intron CG34380 + chr2L_5_6185001 chr2L_6185001 RAL-85 78 chr2L 6261993 6262002 chr2L 6262069 6262078 4 76 7.5 3.5 5.5 0.6 85 chr2L 6261993 intron Ddr + chr2L 6262036 intron Ddr + chr2L 6262078 intron Ddr + chr2L_4_6260001 chr2L_6260001 RAL-85 79 chr2L 6300564 6300584 chr2L 6300650 6300670 5 86 4.5 6.5 5.5 0.8 106 chr2L 6300564 intron Ddr + chr2L 6300617 intron Ddr + chr2L 6300670 intron Ddr + chr2L_5_6300001 chr2L_6300001 RAL-85 80 chr2L 6363155 6363166 chr2L 6366081 6366092 Burdock 4 2925 3.5 7.5 5.5 0.6 2937 chr2L 6363155 intergenic not near genes chr2L 6364624 intergenic not near genes chr2L 6366092 intergenic not near genes chr2L_4_6360001 chr2L_6360001 RAL-85 81 chr2L 6426853 6426888 chr2L 6445113 6445148 roo 8 18260 2.5 5.5 4.0 1.6 18295 chr2L 6426853 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_8_6435001 chr2L_6435001 RAL-85 82 chr2L 6589976 6590120 chr2L 6590118 6590198 5 116 6.0 4.0 5.0 0.8 222 chr2L 6589976 intron CG11319 - chr2L 6590087 intron CG11319 - chr2L 6590198 intron CG11319 - chr2L_5_6590001 chr2L_6590001 RAL-85 83 chr2L 6596218 6596243 chr2L 6596389 6596418 5 174 4.0 7.5 5.8 0.7 200 chr2L 6596218 intron CG11319 - chr2L 6596318 intron CG11319 - chr2L 6596418 intron CG11319 - chr2L_5_6595001 chr2L_6595001 RAL-85 84 chr2L 6677656 6677676 chr2L 6677739 6677759 5 83 4.5 3.0 3.8 1.0 103 chr2L 6677656 intergenic CG11329 -,Nhe3 - chr2L 6677708 intergenic CG11329 -,Nhe3 - chr2L 6677759 intergenic Nhe3 -,CG11329 - chr2L_5_6675001 chr2L_6675001 RAL-85 85 chr2L 6694638 6694667 chr2L 6694714 6694743 7 76 6.5 8.5 7.5 0.8 105 chr2L 6694638 intron Tsp - chr2L 6694690 intron Tsp - chr2L 6694743 intron Tsp - chr2L_7_6690001 chr2L_6690001 RAL-85 86 chr2L 6771987 6772021 chr2L 6772074 6772084 5 78 11.5 11.5 11.5 0.4 97 chr2L 6771987 intron CG11321 - chr2L 6772036 intron CG11321 - chr2L 6772084 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-85 87 chr2L 6774124 6774144 chr2L 6774205 6774220 5 80 8.0 6.0 7.0 0.6 96 chr2L 6774124 5` UTR CG17378 + chr2L 6774172 5` UTR CG17378 + chr2L 6774220 5` UTR CG17378 + chr2L_5_6770001 chr2L_6770001 RAL-85 88 chr2L 6812021 6812043 chr2L 6812225 6812246 5 204 2.5 6.0 4.2 1.0 225 chr2L 6812021 intergenic not near genes chr2L 6812134 intergenic not near genes chr2L 6812246 intergenic CR44081 + chr2L_5_6810001 chr2L_6810001 RAL-85 89 chr2L 6833386 6833409 chr2L 6833473 6833495 4 86 3.5 3.5 3.5 0.9 109 chr2L 6833386 intron sens-2 + chr2L 6833440 intron sens-2 + chr2L 6833495 intron sens-2 + chr2L_4_6830001 chr2L_6830001 RAL-85 90 chr2L 6850384 6850408 chr2L 6850467 6850514 4 89 1.5 1.5 1.5 1.6 130 chr2L 6850384 intergenic not near genes chr2L 6850449 intergenic not near genes chr2L 6850514 intergenic not near genes chr2L_4_6850001 chr2L_6850001 RAL-85 91 chr2L 6876776 6876804 chr2L 6882967 6882992 diver 7 6188 2.5 2.5 2.5 2.0 6216 chr2L 6876776 intron Nlg2 + chr2L 6879884 intron Nlg2 + chr2L 6882992 intron Nlg2 + chr2L_7_6875001 chr2L_6875001 RAL-85 92 chr2L 7293890 7293912 chr2L 7293967 7293987 4 76 10.0 14.0 12.0 0.3 97 chr2L 7293890 intergenic not near genes chr2L 7293938 intergenic not near genes chr2L 7293987 intergenic not near genes chr2L_4_7290001 chr2L_7290001 RAL-85 93 chr2L 7343326 7343355 chr2L 7350441 7350471 roo 19 7116 3.0 3.5 3.2 4.5 7145 chr2L 7343326 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350471 intron Wnt6 + chr2L_19_7345001 chr2L_7345001 RAL-85 94 chr2L 7399317 7399331 chr2L 7399690 7399704 4 373 1.0 2.5 1.8 1.4 387 chr2L 7399317 intergenic not near genes chr2L 7399510 intergenic not near genes chr2L 7399704 intergenic not near genes chr2L_4_7395001 chr2L_7395001 RAL-85 95 chr2L 7513773 7513786 chr2L 7513850 7513863 4 77 1.0 1.5 1.2 1.8 90 chr2L 7513773 intron RapGAP1 - chr2L 7513818 intron RapGAP1 - chr2L 7513863 intron RapGAP1 - chr2L_4_7510001 chr2L_7510001 RAL-85 96 chr2L 7517800 7518024 chr2L 7517891 7518101 4 82 2.5 4.0 3.2 1.0 301 chr2L 7517800 intron RapGAP1 - chr2L 7517950 intron RapGAP1 - chr2L 7518101 intron RapGAP1 - chr2L_4_7515001 chr2L_7515001 RAL-85 97 chr2L 7676892 7676912 chr2L 7676978 7677001 8 88 11.0 11.0 11.0 0.7 109 chr2L 7676892 intron Myo28B1 + chr2L 7676946 intron Myo28B1 + chr2L 7677001 intron Myo28B1 + chr2L_8_7675001 chr2L_7675001 RAL-85 98 chr2L 7768851 7768881 chr2L 7768927 7768951 5 75 1.5 4.0 2.8 1.3 100 chr2L 7768851 intron CG7191 + chr2L 7768901 intron CG7191 + chr2L 7768951 intron CG7191 + chr2L_5_7765001 chr2L_7765001 RAL-85 99 chr2L 7922743 7922772 chr2L 7922823 7922853 9 81 1.0 0.5 0.8 5.0 110 chr2L 7922743 intron Snoo - chr2L 7922798 intron Snoo - chr2L 7922853 intron Snoo - chr2L_9_7920001 chr2L_7920001 RAL-85 100 chr2L 8044074 8044117 chr2L 8044174 8044196 7 90 1.0 0.5 0.8 3.9 122 chr2L 8044074 intron CG7466 + chr2L 8044135 intron CG7466 + chr2L 8044196 intron CG7466 + chr2L_7_8040001 chr2L_8040001 RAL-85 101 chr2L 8167144 8167177 chr2L 8167235 8167266 5 90 5.0 5.0 5.0 0.8 122 chr2L 8167144 intron Piezo + chr2L 8167205 intron Piezo + chr2L 8167266 intron Piezo + chr2L_5_8165001 chr2L_8165001 RAL-85 102 chr2L 8238419 8238431 chr2L 8238497 8238508 4 78 10.5 9.0 9.8 0.4 89 chr2L 8238419 intron Pvr - chr2L 8238464 intron Pvr - chr2L 8238508 intron Pvr - chr2L_4_8235001 chr2L_8235001 RAL-85 103 chr2L 8270004 8270018 chr2L 8270086 8270100 4 81 8.5 7.0 7.8 0.5 96 chr2L 8270004 intron Btk29A - chr2L 8270052 intron Btk29A - chr2L 8270100 intron Btk29A - chr2L_4_8270001 chr2L_8270001 RAL-85 104 chr2L 8586289 8586314 chr2L 8586365 8586391 8 75 13.0 12.0 12.5 0.6 102 chr2L 8586289 intron Sema-1a + chr2L 8586340 intron Sema-1a + chr2L 8586391 intron Sema-1a + chr2L_8_8585001 chr2L_8585001 RAL-85 105 chr2L 8652404 8652416 chr2L 8652488 8652499 4 84 3.5 1.5 2.5 1.1 95 chr2L 8652404 intron Sema-1a + chr2L 8652452 intron Sema-1a + chr2L 8652499 intron Sema-1a + chr2L_4_8650001 chr2L_8650001 RAL-85 106 chr2L 8723134 8723148 chr2L 8731511 8731525 Tirant 6 8376 2.0 5.0 3.5 1.3 8391 chr2L 8723134 intron raw - chr2L 8727330 intron raw - chr2L 8731525 intron raw - chr2L_6_8725001 chr2L_8725001 RAL-85 107 chr2L 8940002 8940016 chr2L 8943023 8943036 5 3021 8.0 11.5 9.8 0.5 3034 chr2L 8940002 exon CG9510 - chr2L 8941519 exon CG9510 - chr2L 8943036 exon CG9515 - chr2L_5_8940001 chr2L_8940001 RAL-85 108 chr2L 9000283 9000310 chr2L 9007793 9007820 roo 6 7509 4.0 0.5 2.2 1.9 7537 chr2L 9000283 intergenic Try29F + chr2L 9004052 intergenic not near genes chr2L 9007820 intergenic not near genes chr2L_6_9000001 chr2L_9000001 RAL-85 109 chr2L 9025817 9025854 chr2L 9025901 9025938 12 84 16.0 14.0 15.0 0.8 121 chr2L 9025817 intron,3` UTR CG9582 -,CR44352 - chr2L 9025878 intron,3` UTR CG9582 -,CR44352 - chr2L 9025938 intron,3` UTR CG9582 -,CR44352 - chr2L_12_9025001 chr2L_9025001 RAL-85 110 chr2L 9047322 9047327 chr2L 9047403 9047409 4 82 4.0 5.0 4.5 0.7 87 chr2L 9047322 intergenic not near genes chr2L 9047366 intergenic not near genes chr2L 9047409 intergenic not near genes chr2L_4_9045001 chr2L_9045001 RAL-85 111 chr2L 9084336 9084340 chr2L 16217660 16217660 16 7133322 14.0 16.0 15.0 1.0 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_16_12650001 chr2L_12650001 RAL-85 112 chr2L 9092012 9092046 chr2L 9092104 9092131 5 91 10.5 7.0 8.8 0.5 119 chr2L 9092012 intergenic not near genes chr2L 9092072 intergenic not near genes chr2L 9092131 intergenic not near genes chr2L_5_9090001 chr2L_9090001 RAL-85 113 chr2L 9251150 9251179 chr2L 9251247 9251276 8 94 0.0 6.5 3.2 1.9 126 chr2L 9251150 intergenic aust -,borr - chr2L 9251213 intergenic aust -,borr - chr2L 9251276 intergenic borr -,aust - chr2L_8_9250001 chr2L_9250001 RAL-85 114 chr2L 9273170 9273191 chr2L 9273253 9273271 5 82 12.0 13.0 12.5 0.4 101 chr2L 9273170 intron Ggamma30A + chr2L 9273220 intron Ggamma30A + chr2L 9273271 intron Ggamma30A + chr2L_5_9270001 chr2L_9270001 RAL-85 115 chr2L 9274193 9274225 chr2L 9274272 9274305 7 79 10.5 9.0 9.8 0.6 112 chr2L 9274193 intron Ggamma30A + chr2L 9274249 intron Ggamma30A + chr2L 9274305 intron Ggamma30A + chr2L_7_9270001 chr2L_9270001 RAL-85 116 chr2L 9285034 9285041 chr2L 9285110 9285117 5 76 10.0 9.5 9.8 0.5 83 chr2L 9285034 intron Ggamma30A + chr2L 9285076 intron Ggamma30A + chr2L 9285117 intron Ggamma30A + chr2L_5_9285001 chr2L_9285001 RAL-85 117 chr2L 9297389 9297403 chr2L 9297466 9297480 5 76 7.0 7.0 7.0 0.6 91 chr2L 9297389 3` UTR Ggamma30A + chr2L 9297434 3` UTR Ggamma30A + chr2L 9297480 3` UTR Ggamma30A + chr2L_5_9295001 chr2L_9295001 RAL-85 118 chr2L 9352863 9352890 chr2L 9352945 9352972 5 82 5.5 7.0 6.2 0.7 109 chr2L 9352863 intergenic not near genes chr2L 9352918 intergenic not near genes chr2L 9352972 intergenic not near genes chr2L_5_9350001 chr2L_9350001 RAL-85 119 chr2L 9393503 9393527 chr2L 9396470 9396494 jockey 5 2967 2.0 1.0 1.5 2.0 2991 chr2L 9393503 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396494 intron Shawl - chr2L_5_9390001 chr2L_9390001 RAL-85 120 chr2L 9450012 9450032 chr2L 9450102 9450109 4 87 9.0 5.0 7.0 0.5 97 chr2L 9450012 intron numb + chr2L 9450060 intron numb + chr2L 9450109 intron numb + chr2L_4_9450001 chr2L_9450001 RAL-85 121 chr2L 9456933 9456958 chr2L 9457014 9457039 8 81 0.5 1.5 1.0 4.0 106 chr2L 9456933 intron numb + chr2L 9456986 intron numb + chr2L 9457039 intron numb + chr2L_8_9455001 chr2L_9455001 RAL-85 122 chr2L 9593356 9593393 chr2L 9593437 9593472 5 81 11.5 11.5 11.5 0.4 116 chr2L 9593356 intergenic not near genes chr2L 9593414 intergenic not near genes chr2L 9593472 intergenic not near genes chr2L_5_9590001 chr2L_9590001 RAL-85 123 chr2L 9686352 9686379 chr2L 9686436 9686463 7 83 12.5 10.0 11.2 0.6 111 chr2L 9686352 intron Pka-C1 - chr2L 9686408 intron Pka-C1 - chr2L 9686463 intron Pka-C1 - chr2L_7_9685001 chr2L_9685001 RAL-85 124 chr2L 9973727 9973759 chr2L 9980846 9980878 HMS-Beagle 16 7118 6.5 6.0 6.2 2.2 7151 chr2L 9973727 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980878 intergenic not near genes chr2L_16_9975001 chr2L_9975001 RAL-85 125 chr2L 10023076 10023102 chr2L 10023161 10023187 9 80 9.0 10.0 9.5 0.9 111 chr2L 10023076 intergenic not near genes chr2L 10023132 intergenic not near genes chr2L 10023187 intergenic not near genes chr2L_9_10020001 chr2L_10020001 RAL-85 126 chr2L 10045414 10045438 chr2L 10045494 10045516 4 80 3.5 6.0 4.8 0.7 102 chr2L 10045414 intergenic not near genes chr2L 10045465 intergenic not near genes chr2L 10045516 intergenic not near genes chr2L_4_10045001 chr2L_10045001 RAL-85 127 chr2L 10051724 10051752 chr2L 10051809 10051837 15 84 6.5 9.0 7.8 1.7 113 chr2L 10051724 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051837 5` UTR CR44874 + chr2L_15_10050001 chr2L_10050001 RAL-85 128 chr2L 10133047 10133085 chr2L 10133128 10133163 8 80 3.5 5.0 4.2 1.5 116 chr2L 10133047 intron CG44153 - chr2L 10133105 intron CG44153 - chr2L 10133163 intron CG44153 - chr2L_8_10130001 chr2L_10130001 RAL-85 129 chr2L 10152088 10152112 chr2L 10152175 10152199 4 87 10.0 13.0 11.5 0.3 111 chr2L 10152088 intron,intron CG44153 -,CG4839 + chr2L 10152144 intron,intron CG44153 -,CG4839 + chr2L 10152199 intron,intron CG44153 -,CG4839 + chr2L_4_10150001 chr2L_10150001 RAL-85 130 chr2L 10156321 10156355 chr2L 10163791 10163825 blood 11 7470 2.5 3.0 2.8 2.9 7504 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160073 intron CG44153 - chr2L 10163825 intron CG44153 - chr2L_11_10160001 chr2L_10160001 RAL-85 131 chr2L 10603231 10603257 chr2L 10603334 10603360 6 103 7.0 6.0 6.5 0.8 129 chr2L 10603231 intron Trim9 + chr2L 10603296 intron Trim9 + chr2L 10603360 intron Trim9 + chr2L_6_10600001 chr2L_10600001 RAL-85 132 chr2L 10603834 10603861 chr2L 10603965 10603992 11 130 12.0 11.5 11.8 0.9 158 chr2L 10603834 intron Trim9 + chr2L 10603913 intron Trim9 + chr2L 10603992 intron Trim9 + chr2L_11_10600001 chr2L_10600001 RAL-85 133 chr2L 10640643 10640669 chr2L 10640732 10640758 10 89 13.5 13.5 13.5 0.7 115 chr2L 10640643 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640758 exon CG31872 + chr2L_10_10640001 chr2L_10640001 RAL-85 134 chr2L 10653264 10653291 chr2L 10653360 10653387 8 96 10.0 11.5 10.8 0.7 123 chr2L 10653264 exon CG17098 + chr2L 10653326 intron CG17098 + chr2L 10653387 intron CG17098 + chr2L_8_10650001 chr2L_10650001 RAL-85 135 chr2L 10862843 10862876 chr2L 10864457 10864490 Rt1c 12 1615 2.0 4.0 3.0 3.0 1647 chr2L 10862843 3` UTR CR43807 - chr2L 10863666 intron CR43807 - chr2L 10864490 3` UTR CR43807 - chr2L_12_10860001 chr2L_10860001 RAL-85 136 chr2L 10946949 10946977 chr2L 10956164 10956191 roo 12 9215 5.5 7.5 6.5 1.6 9242 chr2L 10946949 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956191 intron dpr2 - chr2L_12_10950001 chr2L_10950001 RAL-85 137 chr2L 11248574 11248589 chr2L 11248656 11248672 6 81 9.5 3.5 6.5 0.8 98 chr2L 11248574 intron ab + chr2L 11248623 intron ab + chr2L 11248672 intron ab + chr2L_6_11245001 chr2L_11245001 RAL-85 138 chr2L 11315268 11315272 chr2L 11317672 11317676 G2 4 2404 2.5 2.5 2.5 1.1 2408 chr2L 11315268 intergenic not near genes chr2L 11316472 intergenic not near genes chr2L 11317676 intergenic not near genes chr2L_4_11315001 chr2L_11315001 RAL-85 139 chr2L 11380492 11380643 chr2L 11380615 11380720 8 109 3.0 1.0 2.0 2.7 228 chr2L 11380492 intergenic not near genes chr2L 11380606 intergenic not near genes chr2L 11380720 intergenic not near genes chr2L_8_11380001 chr2L_11380001 RAL-85 140 chr2L 11418655 11418688 chr2L 11418734 11418766 12 79 10.0 11.0 10.5 1.0 111 chr2L 11418655 intergenic not near genes chr2L 11418710 intergenic not near genes chr2L 11418766 intergenic not near genes chr2L_12_11415001 chr2L_11415001 RAL-85 141 chr2L 11491130 11491158 chr2L 11491211 11491239 8 78 4.5 4.5 4.5 1.5 109 chr2L 11491130 intergenic not near genes chr2L 11491184 intergenic not near genes chr2L 11491239 intergenic not near genes chr2L_8_11490001 chr2L_11490001 RAL-85 142 chr2L 11562199 11562219 chr2L 11562281 11562297 4 81 10.5 11.0 10.8 0.3 98 chr2L 11562199 intergenic CR44495 + chr2L 11562248 intergenic CR44495 + chr2L 11562297 intergenic CR44495 + chr2L_4_11560001 chr2L_11560001 RAL-85 143 chr2L 11563640 11563666 chr2L 11568841 11568869 copia 5 5203 3.5 3.0 3.2 1.2 5229 chr2L 11563640 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568869 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-85 144 chr2L 11614052 11614079 chr2L 11615547 11615548 hopper2 5 1488 3.0 3.5 3.2 1.2 1496 chr2L 11614052 intron kek2 + chr2L 11614800 intron kek2 + chr2L 11615548 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-85 145 chr2L 11684389 11684410 chr2L 11684626 11684641 6 236 5.0 7.5 6.2 0.8 252 chr2L 11684389 intergenic not near genes chr2L 11684515 intergenic not near genes chr2L 11684641 intergenic not near genes chr2L_6_11680001 chr2L_11680001 RAL-85 146 chr2L 11713512 11713530 chr2L 11720980 11720998 blood 4 7468 3.5 1.0 2.2 1.2 7486 chr2L 11713512 intergenic not near genes chr2L 11717255 intergenic not near genes chr2L 11720998 intergenic CR44143 + chr2L_4_11715001 chr2L_11715001 RAL-85 147 chr2L 11725226 11725251 chr2L 11725309 11725334 6 83 6.0 7.5 6.8 0.8 108 chr2L 11725226 intergenic not near genes chr2L 11725280 intergenic not near genes chr2L 11725334 intergenic not near genes chr2L_6_11725001 chr2L_11725001 RAL-85 148 chr2L 11750327 11750338 chr2L 11750613 11750623 4 286 9.5 3.0 6.2 0.6 296 chr2L 11750327 intergenic not near genes chr2L 11750475 intergenic not near genes chr2L 11750623 intergenic not near genes chr2L_4_11750001 chr2L_11750001 RAL-85 149 chr2L 11892797 11892819 chr2L 11892888 11892911 5 90 9.0 10.5 9.8 0.5 114 chr2L 11892797 intron Pde1c - chr2L 11892854 intron Pde1c - chr2L 11892911 intron Pde1c - chr2L_5_11890001 chr2L_11890001 RAL-85 150 chr2L 11906708 11906738 chr2L 11908867 11908897 11 2159 5.0 8.0 6.5 1.5 2189 chr2L 11906708 intron Pde1c - chr2L 11907802 intron Pde1c - chr2L 11908897 intron Pde1c - chr2L_11_11905001 chr2L_11905001 RAL-85 151 chr2L 12151894 12151924 chr2L 12151989 12152019 8 95 10.0 8.5 9.2 0.8 125 chr2L 12151894 intron CG31760 + chr2L 12151956 intron CG31760 + chr2L 12152019 intron CG31760 + chr2L_8_12150001 chr2L_12150001 RAL-85 152 chr2L 12357835 12357865 chr2L 12357942 12357972 5 107 7.5 6.0 6.8 0.6 137 chr2L 12357835 intron,exon bru-2 +,CG17010 + chr2L 12357904 intron,3` UTR bru-2 +,CG17010 + chr2L 12357972 intron bru-2 + chr2L_5_12355001 chr2L_12355001 RAL-85 153 chr2L 12529237 12529261 chr2L 12529389 12529413 5 152 1.5 2.5 2.0 1.7 176 chr2L 12529237 intron bun - chr2L 12529325 intron bun - chr2L 12529413 intron bun - chr2L_5_12525001 chr2L_12525001 RAL-85 154 chr2L 12693844 12693860 chr2L 12693921 12693937 4 77 8.5 2.5 5.5 0.6 93 chr2L 12693844 3` UTR CG6153 + chr2L 12693890 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693937 3` UTR,3` UTR CG6153 +,CG5780 - chr2L_4_12690001 chr2L_12690001 RAL-85 155 chr2L 12695439 12695464 chr2L 12695542 12695565 8 100 11.5 5.0 8.2 0.9 126 chr2L 12695439 exon PICK1 + chr2L 12695502 exon PICK1 + chr2L 12695565 intron PICK1 + chr2L_8_12695001 chr2L_12695001 RAL-85 156 chr2L 12728929 12728945 chr2L 12729169 12729185 pogo 4 241 0.5 7.0 3.8 0.8 256 chr2L 12728929 intron MRP + chr2L 12729057 intron MRP + chr2L 12729185 exon MRP + chr2L_4_12725001 chr2L_12725001 RAL-85 157 chr2L 12739172 12739198 chr2L 12743953 12743979 Doc 11 4781 4.0 2.0 3.0 2.8 4807 chr2L 12739172 exon MRP + chr2L 12741576 intron MRP + chr2L 12743979 exon MRP + chr2L_11_12740001 chr2L_12740001 RAL-85 158 chr2L 12861699 12861730 chr2L 12863166 12863179 hobo 6 1464 3.5 5.5 4.5 1.1 1480 chr2L 12861699 intergenic not near genes chr2L 12862439 intergenic not near genes chr2L 12863179 intergenic not near genes chr2L_6_12860001 chr2L_12860001 RAL-85 159 chr2L 12868242 12868269 chr2L 12868328 12868355 8 85 9.5 8.5 9.0 0.8 113 chr2L 12868242 intergenic not near genes chr2L 12868298 intergenic not near genes chr2L 12868355 intergenic not near genes chr2L_8_12865001 chr2L_12865001 RAL-85 160 chr2L 12894026 12894049 chr2L 12895491 12895508 hobo 6 1462 6.0 5.0 5.5 0.9 1482 chr2L 12894026 intergenic not near genes chr2L 12894767 intergenic not near genes chr2L 12895508 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-85 161 chr2L 12933854 12933881 chr2L 12941321 12941348 blood 10 7466 4.5 4.5 4.5 1.8 7494 chr2L 12933854 intergenic not near genes chr2L 12937601 intergenic not near genes chr2L 12941348 intergenic not near genes chr2L_10_12935001 chr2L_12935001 RAL-85 162 chr2L 12949280 12949285 chr2L 12949344 12949378 6 86 13.0 13.5 13.2 0.4 98 chr2L 12949280 intergenic not near genes chr2L 12949329 intergenic not near genes chr2L 12949378 intergenic not near genes chr2L_6_12945001 chr2L_12945001 RAL-85 163 chr2L 12955887 12955899 chr2L 12956084 12956084 5 195 9.0 14.5 11.8 0.4 197 chr2L 12955887 intergenic not near genes chr2L 12955986 intergenic not near genes chr2L 12956084 intergenic not near genes chr2L_5_12955001 chr2L_12955001 RAL-85 164 chr2L 13248126 13248142 chr2L 13248233 13248249 4 107 9.5 10.0 9.8 0.4 123 chr2L 13248126 intron CG16820 + chr2L 13248188 intron CG16820 + chr2L 13248249 intron CG16820 + chr2L_4_13245001 chr2L_13245001 RAL-85 165 chr2L 13405648 13405678 chr2L 13410445 13410475 Doc 8 4797 3.0 0.5 1.8 2.9 4827 chr2L 13405648 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410475 intron CG7110 + chr2L_8_13405001 chr2L_13405001 RAL-85 166 chr2L 13435446 13435471 chr2L 13435549 13435579 4 106 8.0 5.5 6.8 0.5 133 chr2L 13435446 intron CG42784 + chr2L 13435512 intron CG42784 + chr2L 13435579 intron CG42784 + chr2L_4_13435001 chr2L_13435001 RAL-85 167 chr2L 13449461 13449470 chr2L 13456897 13456906 Quasimodo 4 7436 2.0 1.0 1.5 1.6 7445 chr2L 13449461 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453184 intron CG42784 + chr2L 13456906 intron CG42784 + chr2L_4_13450001 chr2L_13450001 RAL-85 168 chr2L 13481451 13481475 chr2L 13482058 13482082 jockey 9 607 4.0 3.5 3.8 1.9 631 chr2L 13481451 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482082 intron CG42784 + chr2L_9_13480001 chr2L_13480001 RAL-85 169 chr2L 13546777 13546806 chr2L 13546860 13546889 8 82 9.5 9.5 9.5 0.8 112 chr2L 13546777 intron B4 - chr2L 13546833 intron B4 - chr2L 13546889 intron B4 - chr2L_8_13545001 chr2L_13545001 RAL-85 170 chr2L 13622206 13622235 chr2L 13622310 13622339 7 104 7.5 7.0 7.2 0.9 133 chr2L 13622206 intron kuz + chr2L 13622272 intron kuz + chr2L 13622339 intron kuz + chr2L_7_13620001 chr2L_13620001 RAL-85 171 chr2L 13693022 13693040 chr2L 13693098 13693114 4 76 9.5 10.5 10.0 0.4 92 chr2L 13693022 intron CG31814 - chr2L 13693068 intron CG31814 - chr2L 13693114 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-85 172 chr2L 13693159 13693170 chr2L 13693553 13693564 5 394 12.5 14.0 13.2 0.4 405 chr2L 13693159 intron CG31814 - chr2L 13693362 intron CG31814 - chr2L 13693564 intron CG31814 - chr2L_5_13690001 chr2L_13690001 RAL-85 173 chr2L 13699554 13699584 chr2L 13699631 13699660 6 75 18.0 20.5 19.2 0.3 106 chr2L 13699554 intron CG31814 - chr2L 13699607 intron CG31814 - chr2L 13699660 intron CG31814 - chr2L_6_13695001 chr2L_13695001 RAL-85 174 chr2L 13719638 13719645 chr2L 13719825 13719832 4 187 14.0 15.5 14.8 0.3 194 chr2L 13719638 intergenic not near genes chr2L 13719735 intergenic not near genes chr2L 13719832 intergenic not near genes chr2L_4_13715001 chr2L_13715001 RAL-85 175 chr2L 13754708 13754723 chr2L 13755254 13755269 6 546 2.0 7.0 4.5 1.1 561 chr2L 13754708 intron,intron CR44846 +,TM9SF4 + chr2L 13754988 intron,intron CR44846 +,TM9SF4 + chr2L 13755269 intron,intron CR44846 +,TM9SF4 + chr2L_6_13750001 chr2L_13750001 RAL-85 176 chr2L 13761797 13761833 chr2L 13762908 13762931 Doc 8 1109 3.0 1.5 2.2 2.5 1134 chr2L 13761797 intron TM9SF4 + chr2L 13762364 intron TM9SF4 + chr2L 13762931 intron TM9SF4 + chr2L_8_13760001 chr2L_13760001 RAL-85 177 chr2L 14149735 14149751 chr2L 14149812 14149828 6 77 0.5 1.0 0.8 3.3 93 chr2L 14149735 intron CG17341 + chr2L 14149782 intron CG17341 + chr2L 14149828 intron CG17341 + chr2L_6_14145001 chr2L_14145001 RAL-85 178 chr2L 14335662 14335663 chr2L 14337034 14337059 4 1390 11.5 8.0 9.8 0.4 1397 chr2L 14335662 intron CG33090 + chr2L 14336360 intron CG33090 + chr2L 14337059 intron CG33090 + chr2L_4_14335001 chr2L_14335001 RAL-85 179 chr2L 14451772 14451805 chr2L 14452009 14452042 5 237 16.5 14.0 15.2 0.3 270 chr2L 14451772 intergenic not near genes chr2L 14451907 intergenic not near genes chr2L 14452042 intergenic not near genes chr2L_5_14450001 chr2L_14450001 RAL-85 180 chr2L 14502347 14502377 chr2L 14502436 14502466 7 88 8.5 7.5 8.0 0.8 119 chr2L 14502347 intergenic not near genes chr2L 14502406 intergenic not near genes chr2L 14502466 intergenic not near genes chr2L_7_14500001 chr2L_14500001 RAL-85 181 chr2L 14588389 14588409 chr2L 14588543 14588563 4 154 1.0 2.5 1.8 1.4 174 chr2L 14588389 intergenic CG42680 - chr2L 14588476 intergenic CG42680 - chr2L 14588563 intergenic CG42680 - chr2L_4_14585001 chr2L_14585001 RAL-85 182 chr2L 14595424 14595437 chr2L 14595515 14595528 4 91 9.5 10.5 10.0 0.4 104 chr2L 14595424 intergenic not near genes chr2L 14595476 intergenic not near genes chr2L 14595528 intergenic not near genes chr2L_4_14595001 chr2L_14595001 RAL-85 183 chr2L 14619956 14619981 chr2L 14620197 14620221 5 240 6.5 11.0 8.8 0.5 265 chr2L 14619956 intron osp - chr2L 14620088 intron osp - chr2L 14620221 intron osp - chr2L_5_14620001 chr2L_14620001 RAL-85 184 chr2L 14641408 14641437 chr2L 14641487 14641516 4 78 5.5 5.5 5.5 0.6 108 chr2L 14641408 intron osp - chr2L 14641462 intron osp - chr2L 14641516 intron osp - chr2L_4_14640001 chr2L_14640001 RAL-85 185 chr2L 14657031 14657045 chr2L 14657108 14657124 4 78 5.5 5.0 5.2 0.6 93 chr2L 14657031 intron osp - chr2L 14657078 intron osp - chr2L 14657124 intron osp - chr2L_4_14655001 chr2L_14655001 RAL-85 186 chr2L 14803880 14803913 chr2L 14809083 14809116 copia 12 5203 3.0 2.5 2.8 3.2 5236 chr2L 14803880 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809116 intergenic not near genes chr2L_12_14805001 chr2L_14805001 RAL-85 187 chr2L 15127772 15127792 chr2L 15127858 15127878 5 84 15.5 20.0 17.8 0.3 106 chr2L 15127772 intergenic not near genes chr2L 15127825 intergenic not near genes chr2L 15127878 intergenic not near genes chr2L_5_15125001 chr2L_15125001 RAL-85 188 chr2L 15226369 15226392 chr2L 15226445 15226467 6 76 1.5 2.0 1.8 2.1 98 chr2L 15226369 intergenic not near genes chr2L 15226418 intergenic not near genes chr2L 15226467 intergenic not near genes chr2L_6_15225001 chr2L_15225001 RAL-85 189 chr2L 15282705 15282735 chr2L 15283046 15283077 7 339 12.0 6.0 9.0 0.7 372 chr2L 15282705 intergenic not near genes chr2L 15282891 intergenic not near genes chr2L 15283077 intergenic not near genes chr2L_7_15280001 chr2L_15280001 RAL-85 190 chr2L 15446051 15446069 chr2L 15453520 15453538 blood 4 7469 2.0 0.0 1.0 2.0 7487 chr2L 15446051 intergenic not near genes chr2L 15449794 intergenic not near genes chr2L 15453538 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-85 191 chr2L 15469855 15469882 chr2L 15469947 15469978 5 95 8.0 10.0 9.0 0.5 123 chr2L 15469855 intergenic CR45353 - chr2L 15469916 intergenic CR45353 - chr2L 15469978 intergenic CR45353 - chr2L_5_15465001 chr2L_15465001 RAL-85 192 chr2L 15527439 15527458 chr2L 15527516 15527532 4 77 1.0 4.0 2.5 1.1 93 chr2L 15527439 intergenic not near genes chr2L 15527486 intergenic not near genes chr2L 15527532 intergenic not near genes chr2L_4_15525001 chr2L_15525001 RAL-85 193 chr2L 15544371 15544388 chr2L 15544453 15544471 5 83 14.0 9.5 11.8 0.4 100 chr2L 15544371 intergenic not near genes chr2L 15544421 intergenic not near genes chr2L 15544471 intergenic not near genes chr2L_5_15540001 chr2L_15540001 RAL-85 194 chr2L 15887717 15887745 chr2L 15887850 15887878 6 133 1.5 2.0 1.8 2.1 161 chr2L 15887717 intergenic not near genes chr2L 15887798 intergenic not near genes chr2L 15887878 intergenic not near genes chr2L_6_15885001 chr2L_15885001 RAL-85 195 chr2L 15906192 15906209 chr2L 15906281 15906298 6 87 1.5 2.0 1.8 2.1 106 chr2L 15906192 intron beat-Ib - chr2L 15906245 intron beat-Ib - chr2L 15906298 intron beat-Ib - chr2L_6_15905001 chr2L_15905001 RAL-85 196 chr2L 15944973 15945002 chr2L 15945060 15945089 8 85 10.0 14.5 12.2 0.6 116 chr2L 15944973 intron beat-Ib - chr2L 15945031 intron beat-Ib - chr2L 15945089 intron beat-Ib - chr2L_8_15945001 chr2L_15945001 RAL-85 197 chr2L 15956023 15956045 chr2L 15957490 15957512 hobo 4 1467 6.0 1.5 3.8 0.8 1489 chr2L 15956023 intron beat-Ib - chr2L 15956768 intron beat-Ib - chr2L 15957512 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-85 198 chr2L 15977825 15977835 chr2L 15977902 15977912 4 77 13.0 12.0 12.5 0.3 87 chr2L 15977825 intergenic not near genes chr2L 15977868 intergenic not near genes chr2L 15977912 intergenic not near genes chr2L_4_15975001 chr2L_15975001 RAL-85 199 chr2L 16021829 16021858 chr2L 16021912 16021940 7 79 9.0 8.0 8.5 0.7 111 chr2L 16021829 intron beat-Ic + chr2L 16021884 intron beat-Ic + chr2L 16021940 intron beat-Ic + chr2L_7_16020001 chr2L_16020001 RAL-85 200 chr2L 16069273 16069297 chr2L 16069352 16069378 5 81 4.5 10.0 7.2 0.6 105 chr2L 16069273 intron beat-Ia + chr2L 16069326 intron beat-Ia + chr2L 16069378 intron beat-Ia + chr2L_5_16065001 chr2L_16065001 RAL-85 201 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 19.0 16.0 17.5 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-85 202 chr2L 16141165 16141192 chr2L 16146372 16146399 copia 4 5207 0.5 1.5 1.0 2.0 5234 chr2L 16141165 intergenic not near genes chr2L 16143782 intergenic not near genes chr2L 16146399 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-85 203 chr2L 16195916 16195922 chr2L 16195993 16195999 4 77 12.0 11.0 11.5 0.3 83 chr2L 16195916 3` UTR CR44735 - chr2L 16195958 3` UTR CR44735 - chr2L 16195999 3` UTR CR44735 - chr2L_4_16195001 chr2L_16195001 RAL-85 204 chr2L 9084336 9084340 chr2L 16217660 16217660 15 7133321 14.0 16.0 15.0 0.9 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_12650001 chr2L_12650001 RAL-85 205 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 4 145889 19.0 16.0 17.5 0.2 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-85 206 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405059 14.0 15.5 14.8 0.3 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-85 207 chr2L 16280264 16280283 chr2L 16281425 16281454 1360 9 1167 2.0 4.5 3.2 2.1 1190 chr2L 16280264 intron crp - chr2L 16280859 intron crp - chr2L 16281454 intron crp - chr2L_9_16280001 chr2L_16280001 RAL-85 208 chr2L 16432505 16432513 chr2L 16432591 16432599 4 86 6.5 5.0 5.8 0.6 94 chr2L 16432505 intron CG5888 - chr2L 16432552 intron CG5888 - chr2L 16432599 intron CG5888 - chr2L_4_16430001 chr2L_16430001 RAL-85 209 chr2L 16443995 16444011 chr2L 16444072 16444088 4 77 2.5 2.5 2.5 1.1 93 chr2L 16443995 intron CG5888 - chr2L 16444042 intron CG5888 - chr2L 16444088 intron CG5888 - chr2L_4_16440001 chr2L_16440001 RAL-85 210 chr2L 16694134 16694148 chr2L 16694219 16694233 5 86 10.5 13.0 11.8 0.4 99 chr2L 16694134 intron grp + chr2L 16694184 intron grp + chr2L 16694233 intron grp + chr2L_5_16690001 chr2L_16690001 RAL-85 211 chr2L 17000124 17000149 chr2L 17000246 17000271 5 122 5.0 8.5 6.8 0.6 147 chr2L 17000124 intergenic not near genes chr2L 17000198 intergenic not near genes chr2L 17000271 intergenic not near genes chr2L_5_17000001 chr2L_17000001 RAL-85 212 chr2L 17053282 17053307 chr2L 17053692 17053716 4 410 3.0 3.5 3.2 1.0 434 chr2L 17053282 intergenic not near genes chr2L 17053499 intergenic not near genes chr2L 17053716 intergenic not near genes chr2L_4_17050001 chr2L_17050001 RAL-85 213 chr2L 17088843 17088866 chr2L 17088927 17088950 7 84 7.0 5.5 6.2 1.0 107 chr2L 17088843 3` UTR CG12620 + chr2L 17088896 3` UTR CG12620 + chr2L 17088950 3` UTR CG12620 + chr2L_7_17085001 chr2L_17085001 RAL-85 214 chr2L 17122786 17122808 chr2L 17122871 17122893 4 85 7.0 5.0 6.0 0.6 107 chr2L 17122786 intergenic not near genes chr2L 17122840 intergenic CG31784 - chr2L 17122893 intergenic CG31784 - chr2L_4_17120001 chr2L_17120001 RAL-85 215 chr2L 17273200 17273225 chr2L 17277983 17278008 F-element 12 4783 2.5 3.5 3.0 3.0 4808 chr2L 17273200 intergenic not near genes chr2L 17275604 intergenic not near genes chr2L 17278008 intergenic not near genes chr2L_12_17275001 chr2L_17275001 RAL-85 216 chr2L 17344880 17344901 chr2L 17344957 17344978 4 77 1.5 2.5 2.0 1.3 98 chr2L 17344880 intergenic not near genes chr2L 17344929 intergenic not near genes chr2L 17344978 intergenic not near genes chr2L_4_17340001 chr2L_17340001 RAL-85 217 chr2L 17555277 17555300 chr2L 17559808 17559831 5 4531 17.0 10.0 13.5 0.3 4554 chr2L 17555277 exon CG7094 - chr2L 17557554 intergenic not near genes chr2L 17559831 intergenic not near genes chr2L_5_17555001 chr2L_17555001 RAL-85 218 chr2L 17605837 17605863 chr2L 17605914 17605941 4 78 4.5 6.5 5.5 0.6 104 chr2L 17605837 intergenic not near genes chr2L 17605889 intergenic not near genes chr2L 17605941 intergenic not near genes chr2L_4_17605001 chr2L_17605001 RAL-85 219 chr2L 17610370 17610388 chr2L 17611181 17611199 7 811 22.0 21.5 21.8 0.3 829 chr2L 17610370 intergenic not near genes chr2L 17610784 intergenic not near genes chr2L 17611199 intergenic not near genes chr2L_7_17610001 chr2L_17610001 RAL-85 220 chr2L 17727869 17727874 chr2L 17729336 17729341 hobo 4 1467 2.0 2.0 2.0 1.3 1472 chr2L 17727869 intron CadN - chr2L 17728605 intron CadN - chr2L 17729341 intron CadN - chr2L_4_17725001 chr2L_17725001 RAL-85 221 chr2L 17867431 17867457 chr2L 17867717 17867743 10 286 4.5 9.0 6.8 1.3 312 chr2L 17867431 intron CadN2 - chr2L 17867587 intron CadN2 - chr2L 17867743 intron CadN2 - chr2L_10_17865001 chr2L_17865001 RAL-85 222 chr2L 17880005 17880030 chr2L 17880092 17880117 4 87 1.5 4.5 3.0 1.0 112 chr2L 17880005 intergenic not near genes chr2L 17880061 intergenic not near genes chr2L 17880117 intergenic not near genes chr2L_4_17880001 chr2L_17880001 RAL-85 223 chr2L 17944416 17944443 chr2L 17944579 17944606 5 163 5.5 3.5 4.5 0.9 190 chr2L 17944416 intergenic not near genes chr2L 17944511 intergenic not near genes chr2L 17944606 intergenic not near genes chr2L_5_17940001 chr2L_17940001 RAL-85 224 chr2L 18087622 18087650 chr2L 18087806 18087834 5 184 3.0 4.5 3.8 1.0 212 chr2L 18087622 intergenic not near genes chr2L 18087728 intergenic not near genes chr2L 18087834 intergenic not near genes chr2L_5_18085001 chr2L_18085001 RAL-85 225 chr2L 18235077 18235087 chr2L 18235190 18235219 4 127 11.5 8.5 10.0 0.4 142 chr2L 18235077 intron CG42750 - chr2L 18235148 intron CG42750 - chr2L 18235219 intron CG42750 - chr2L_4_18235001 chr2L_18235001 RAL-85 226 chr2L 18274045 18274075 chr2L 18274127 18274161 6 85 2.0 3.0 2.5 1.7 116 chr2L 18274045 intron CG42750 - chr2L 18274103 intron CG42750 - chr2L 18274161 intron CG42750 - chr2L_6_18270001 chr2L_18270001 RAL-85 227 chr2L 18344924 18344934 chr2L 18345033 18345048 4 112 7.0 9.5 8.2 0.4 124 chr2L 18344924 intron Fas3 + chr2L 18344986 intron Fas3 + chr2L 18345048 intron Fas3 + chr2L_4_18340001 chr2L_18340001 RAL-85 228 chr2L 18408031 18408055 chr2L 18412815 18412839 Doc 5 4784 2.0 0.0 1.0 2.5 4808 chr2L 18408031 intergenic not near genes chr2L 18410435 intergenic not near genes chr2L 18412839 intergenic not near genes chr2L_5_18410001 chr2L_18410001 RAL-85 229 chr2L 18442348 18442370 chr2L 18442427 18442449 10 79 0.5 2.0 1.2 4.5 101 chr2L 18442348 3` UTR RpS26 - chr2L 18442398 3` UTR RpS26 - chr2L 18442449 3` UTR RpS26 - chr2L_10_18440001 chr2L_18440001 RAL-85 230 chr2L 18444537 18444552 chr2L 18444620 18444635 6 83 7.0 9.0 8.0 0.7 98 chr2L 18444537 3` UTR ncm - chr2L 18444586 3` UTR ncm - chr2L 18444635 3` UTR ncm - chr2L_6_18440001 chr2L_18440001 RAL-85 231 chr2L 18570689 18570707 chr2L 18570784 18570802 5 95 5.0 7.5 6.2 0.7 113 chr2L 18570689 intron Pde11 - chr2L 18570746 intron Pde11 - chr2L 18570802 intron Pde11 - chr2L_5_18570001 chr2L_18570001 RAL-85 232 chr2L 18812562 18812581 chr2L 18812825 18812844 4 263 2.0 9.5 5.8 0.6 282 chr2L 18812562 intergenic CG17325 +,CG42305 + chr2L 18812703 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812844 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_4_18810001 chr2L_18810001 RAL-85 233 chr2L 18886938 18886956 chr2L 18887287 18887305 5 349 8.0 12.0 10.0 0.5 367 chr2L 18886938 intergenic not near genes chr2L 18887122 intergenic not near genes chr2L 18887305 intergenic not near genes chr2L_5_18885001 chr2L_18885001 RAL-85 234 chr2L 18901486 18901508 chr2L 18901565 18901588 5 79 8.0 8.5 8.2 0.5 102 chr2L 18901486 intergenic not near genes chr2L 18901537 intergenic not near genes chr2L 18901588 intergenic not near genes chr2L_5_18900001 chr2L_18900001 RAL-85 235 chr2L 18981395 18981417 chr2L 18981478 18981500 7 83 14.5 14.0 14.2 0.5 105 chr2L 18981395 intron Swip-1 - chr2L 18981448 intron Swip-1 - chr2L 18981500 intron Swip-1 - chr2L_7_18980001 chr2L_18980001 RAL-85 236 chr2L 19102360 19102379 chr2L 19102436 19102452 4 75 9.5 15.0 12.2 0.3 92 chr2L 19102360 intron,5` UTR,3` UTR Lim3 -,CG17344 +,CG43731 + chr2L 19102406 intron,exon,3` UTR Lim3 -,CG17344 +,CG43731 + chr2L 19102452 intron,exon,3` UTR Lim3 -,CG17344 +,CG43731 + chr2L_4_19100001 chr2L_19100001 RAL-85 237 chr2L 19147379 19147399 chr2L 19154414 19154433 297 4 7035 0.5 1.5 1.0 2.0 7054 chr2L 19147379 intron brat + chr2L 19150906 intron brat + chr2L 19154433 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-85 238 chr2L 19357547 19357569 chr2L 19357637 19357659 7 90 0.0 2.0 1.0 3.5 112 chr2L 19357547 intron dnt - chr2L 19357603 intron dnt - chr2L 19357659 intron dnt - chr2L_7_19355001 chr2L_19355001 RAL-85 239 chr2L 19372717 19372745 chr2L 19372799 19372827 4 82 2.0 0.0 1.0 2.0 110 chr2L 19372717 intergenic CG17349 + chr2L 19372772 intergenic CG17349 + chr2L 19372827 intergenic CG17349 + chr2L_4_19370001 chr2L_19370001 RAL-85 240 chr2L 19407733 19407739 chr2L 19407930 19407935 4 197 4.5 9.0 6.8 0.5 202 chr2L 19407733 intron Pax - chr2L 19407834 intron Pax - chr2L 19407935 intron Pax - chr2L_4_19405001 chr2L_19405001 RAL-85 241 chr2L 19441065 19441073 chr2L 19441142 19441150 6 77 5.0 2.5 3.8 1.2 85 chr2L 19441065 intron CG10237 - chr2L 19441108 intron CG10237 - chr2L 19441150 intron CG10237 - chr2L_6_19440001 chr2L_19440001 RAL-85 242 chr2L 19597278 19597303 chr2L 19597511 19597536 8 233 13.0 5.5 9.2 0.8 258 chr2L 19597278 intron Lar + chr2L 19597407 intron Lar + chr2L 19597536 intron Lar + chr2L_8_19595001 chr2L_19595001 RAL-85 243 chr2L 19620092 19620129 chr2L 19621081 19621118 jockey 13 987 4.5 3.5 4.0 2.6 1026 chr2L 19620092 intron Lar + chr2L 19620605 intron Lar + chr2L 19621118 intron Lar + chr2L_13_19620001 chr2L_19620001 RAL-85 244 chr2L 19689056 19689090 chr2L 19689160 19689194 7 104 1.5 1.0 1.2 3.2 138 chr2L 19689056 intron Lar + chr2L 19689125 intron Lar + chr2L 19689194 intron Lar + chr2L_7_19685001 chr2L_19685001 RAL-85 245 chr2L 19697136 19697169 chr2L 19697229 19697262 7 93 6.5 9.0 7.8 0.8 126 chr2L 19697136 intron Lar + chr2L 19697199 intron Lar + chr2L 19697262 intron Lar + chr2L_7_19695001 chr2L_19695001 RAL-85 246 chr2L 19703541 19703559 chr2L 19712677 19712695 roo 4 9136 5.5 5.5 5.5 0.6 9154 chr2L 19703541 intron Lar + chr2L 19708118 intron Lar + chr2L 19712695 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-85 247 chr2L 19737359 19737380 chr2L 19740826 19740841 1360 7 3467 4.0 4.5 4.2 1.3 3482 chr2L 19737359 intergenic Nf-YB + chr2L 19739100 intergenic not near genes chr2L 19740841 intergenic not near genes chr2L_7_19735001 chr2L_19735001 RAL-85 248 chr2L 19762811 19762839 chr2L 19763053 19763081 pogo 5 242 3.5 1.5 2.5 1.4 270 chr2L 19762811 5` UTR fbp - chr2L 19762946 intron fbp - chr2L 19763081 intron fbp - chr2L_5_19760001 chr2L_19760001 RAL-85 249 chr2L 19837281 19837302 chr2L 19837361 19837382 5 80 9.5 9.0 9.2 0.5 101 chr2L 19837281 intron sick + chr2L 19837332 intron sick + chr2L 19837382 intron sick + chr2L_5_19835001 chr2L_19835001 RAL-85 250 chr2L 19846246 19846274 chr2L 19846327 19846355 6 81 0.5 2.0 1.2 2.7 109 chr2L 19846246 intron sick + chr2L 19846300 intron sick + chr2L 19846355 intron sick + chr2L_6_19845001 chr2L_19845001 RAL-85 251 chr2L 19848532 19848548 chr2L 19848642 19848657 6 110 11.0 10.0 10.5 0.5 125 chr2L 19848532 intron sick + chr2L 19848594 intron sick + chr2L 19848657 intron sick + chr2L_6_19845001 chr2L_19845001 RAL-85 252 chr2L 19871002 19871033 chr2L 19871560 19871595 8 559 12.5 6.0 9.2 0.8 593 chr2L 19871002 intron sick + chr2L 19871298 intron sick + chr2L 19871595 intron sick + chr2L_8_19870001 chr2L_19870001 RAL-85 253 chr2L 19902335 19902367 chr2L 19902460 19902493 7 126 9.0 6.0 7.5 0.8 158 chr2L 19902335 intron sick + chr2L 19902414 intron sick + chr2L 19902493 intron sick + chr2L_7_19900001 chr2L_19900001 RAL-85 254 chr2L 19911290 19911315 chr2L 19911378 19911403 6 88 6.5 9.0 7.8 0.7 113 chr2L 19911290 intron,3` UTR sick +,CR43097 - chr2L 19911346 intron,3` UTR sick +,CR43097 - chr2L 19911403 intron,3` UTR sick +,CR43097 - chr2L_6_19910001 chr2L_19910001 RAL-85 255 chr2L 19964836 19964867 chr2L 19964922 19964953 8 85 14.0 13.5 13.8 0.5 117 chr2L 19964836 intron CG10680 + chr2L 19964894 exon CG10680 + chr2L 19964953 exon CG10680 + chr2L_8_19960001 chr2L_19960001 RAL-85 256 chr2L 19994653 19994687 chr2L 19994733 19994756 5 76 8.0 6.0 7.0 0.6 103 chr2L 19994653 intron CG43861 - chr2L 19994704 intron CG43861 - chr2L 19994756 intron CG43861 - chr2L_5_19990001 chr2L_19990001 RAL-85 257 chr2L 20041442 20041462 chr2L 20041527 20041547 6 82 13.0 15.0 14.0 0.4 105 chr2L 20041442 intron sNPF + chr2L 20041494 intron sNPF + chr2L 20041547 intron sNPF + chr2L_6_20040001 chr2L_20040001 RAL-85 258 chr2L 20296509 20296536 chr2L 20296590 20296617 8 80 0.5 1.0 0.8 4.4 108 chr2L 20296509 intergenic CR43414 - chr2L 20296563 intergenic CR43414 - chr2L 20296617 intergenic CR43414 - chr2L_8_20295001 chr2L_20295001 RAL-85 259 chr2L 20299428 20299443 chr2L 20299546 20299566 4 122 8.5 12.0 10.2 0.4 138 chr2L 20299428 intergenic not near genes chr2L 20299497 intergenic not near genes chr2L 20299566 intergenic not near genes chr2L_4_20295001 chr2L_20295001 RAL-85 260 chr2L 20322638 20322648 chr2L 20322721 20322731 5 83 5.0 9.0 7.0 0.6 93 chr2L 20322638 intron spir + chr2L 20322684 intron spir + chr2L 20322731 intron spir + chr2L_5_20320001 chr2L_20320001 RAL-85 261 chr2L 20370874 20370901 chr2L 20371074 20371096 5 198 5.5 6.5 6.0 0.7 222 chr2L 20370874 intergenic not near genes chr2L 20370985 intergenic not near genes chr2L 20371096 intergenic not near genes chr2L_5_20370001 chr2L_20370001 RAL-85 262 chr2L 20372854 20372878 chr2L 20372933 20372957 8 79 11.5 12.0 11.8 0.6 103 chr2L 20372854 exon Ugt37a1 - chr2L 20372906 exon Ugt37a1 - chr2L 20372957 exon Ugt37a1 - chr2L_8_20370001 chr2L_20370001 RAL-85 263 chr2L 20382343 20382374 chr2L 20382578 20382608 7 232 9.0 6.0 7.5 0.8 265 chr2L 20382343 5` UTR CG16798 - chr2L 20382476 intergenic CG16798 - chr2L 20382608 intergenic CG16798 - chr2L_7_20380001 chr2L_20380001 RAL-85 264 chr2L 20568662 20568674 chr2L 20569052 20569057 X-element 4 388 1.5 1.5 1.5 1.6 395 chr2L 20568662 intron CR45347 + chr2L 20568860 intron CR45347 + chr2L 20569057 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-85 265 chr2L 20932805 20932822 chr2L 20932904 20932916 4 98 13.5 16.5 15.0 0.2 111 chr2L 20932805 exon CG9270 - chr2L 20932860 exon CG9270 - chr2L 20932916 exon CG9270 - chr2L_4_20930001 chr2L_20930001 RAL-85 266 chr2L 20984736 20984770 chr2L 20984828 20984862 9 90 2.5 0.5 1.5 3.6 126 chr2L 20984736 intron CG42238 - chr2L 20984799 intron CG42238 - chr2L 20984862 intron CG42238 - chr2L_9_20980001 chr2L_20980001 RAL-85 267 chr2L 21020275 21020311 chr2L 21023951 21023988 NOF 9 3677 2.0 3.0 2.5 2.6 3713 chr2L 21020275 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21023988 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-85 268 chr2L 21041150 21041168 chr2L 21049411 21049429 Tirant 6 8261 0.5 3.5 2.0 2.0 8279 chr2L 21041150 intron CG42238 - chr2L 21045290 intron CG42238 - chr2L 21049429 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-85 269 chr2L 21199230 21199250 chr2L 21199307 21199326 5 76 7.5 7.5 7.5 0.6 96 chr2L 21199230 intergenic CG31624 -,Ret - chr2L 21199278 3` UTR CG31624 - chr2L 21199326 3` UTR CG31624 - chr2L_5_21195001 chr2L_21195001 RAL-85 270 chr2L 21246514 21246536 chr2L 21246609 21246630 5 95 8.5 11.5 10.0 0.5 116 chr2L 21246514 intron Hr39 + chr2L 21246572 intron Hr39 + chr2L 21246630 intron Hr39 + chr2L_5_21245001 chr2L_21245001 RAL-85 271 chr2L 21327802 21327813 chr2L 21327881 21327905 4 89 5.5 5.5 5.5 0.6 103 chr2L 21327802 intergenic not near genes chr2L 21327854 intergenic not near genes chr2L 21327905 intergenic not near genes chr2L_4_21325001 chr2L_21325001 RAL-85 272 chr2L 21981688 21981706 chr2L 21990851 21990871 roo 5 9165 3.0 7.5 5.2 0.8 9183 chr2L 21981688 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990871 exon CG2528 - chr2L_5_21985001 chr2L_21985001 RAL-85 273 chr2L 22774484 22774514 chr2L 22774564 22774594 8 75 11.0 11.5 11.2 0.7 110 chr2L 22774484 intergenic not near genes chr2L 22774539 intergenic not near genes chr2L 22774594 intergenic not near genes chr2L_8_22770001 chr2L_22770001 RAL-85 274 chr2L 22983945 22983971 chr2L 22984021 22984047 5 75 2.0 0.5 1.2 2.3 102 chr2L 22983945 intron cta + chr2L 22983996 intron cta + chr2L 22984047 intron cta + chr2L_5_22980001 chr2L_22980001 RAL-85 275 chr2L 23006694 23006707 chr2L 23007001 23007014 Osvaldo 5 307 13.0 7.0 10.0 0.5 320 chr2L 23006694 intron Cht3 - chr2L 23006854 intron Cht3 - chr2L 23007014 intron Cht3 - chr2L_5_23005001 chr2L_23005001 RAL-85 276 chr2L 23168855 23168864 chr2L 23168931 23168931 4 74 9.5 1.5 5.5 0.6 76 chr2L 23168855 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168893 intron,5` UTR CG12567 -,mir-2490 + chr2L 23168931 intron CG12567 - chr2L_4_23165001 chr2L_23165001 RAL-85 277 chr2L 23241848 23241857 chr2L 23241928 23241934 4 79 9.5 5.5 7.5 0.5 86 chr2L 23241848 intergenic not near genes chr2L 23241891 intergenic not near genes chr2L 23241934 intergenic not near genes chr2L_4_23240001 chr2L_23240001 RAL-85 278 chr2R 529322 529354 chr2R 537947 537979 Max-element 5 8623 1.5 1.5 1.5 2.0 8657 chr2R 529322 intron CG40378 + chr2R 533650 intron CG40378 + chr2R 537979 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-85 279 chr2R 1082367 1082385 chr2R 1087143 1087161 Doc 6 4776 5.5 2.5 4.0 1.2 4794 chr2R 1082367 intron rl + chr2R 1084764 intron rl + chr2R 1087161 intron rl + chr2R_6_1080001 chr2R_1080001 RAL-85 280 chr2R 1365863 1365873 chr2R 1365975 1365985 4 112 4.5 2.0 3.2 1.0 122 chr2R 1365863 intron l(2)41Ab + chr2R 1365924 intron l(2)41Ab + chr2R 1365985 intron l(2)41Ab + chr2R_4_1365001 chr2R_1365001 RAL-85 281 chr2R 1732862 1732874 chr2R 1733009 1733021 4 147 3.5 5.5 4.5 0.7 159 chr2R 1732862 intron CG41520 + chr2R 1732942 intron CG41520 + chr2R 1733021 intron CG41520 + chr2R_4_1730001 chr2R_1730001 RAL-85 282 chr2R 3587242 3587266 chr2R 3587319 3587343 6 77 4.0 9.0 6.5 0.8 101 chr2R 3587242 intergenic not near genes chr2R 3587292 intergenic not near genes chr2R 3587343 intergenic not near genes chr2R_6_3585001 chr2R_3585001 RAL-85 283 chr2R 4622950 4622982 chr2R 4624109 4624141 1360 9 1158 5.5 1.5 3.5 2.0 1191 chr2R 4622950 intergenic CR44101 - chr2R 4623546 intergenic not near genes chr2R 4624141 intergenic not near genes chr2R_9_4620001 chr2R_4620001 RAL-85 284 chr2R 4783424 4783449 chr2R 4783502 4783526 12 78 10.5 14.0 12.2 0.9 102 chr2R 4783424 intergenic not near genes chr2R 4783475 intergenic not near genes chr2R 4783526 intergenic not near genes chr2R_12_4780001 chr2R_4780001 RAL-85 285 chr2R 4970740 4970746 chr2R 4970818 4970824 5 78 17.5 12.5 15.0 0.3 84 chr2R 4970740 intron Ir41a + chr2R 4970782 intron Ir41a + chr2R 4970824 intron Ir41a + chr2R_5_4970001 chr2R_4970001 RAL-85 286 chr2R 5028514 5028538 chr2R 5028705 5028721 8 190 6.5 1.0 3.8 1.7 207 chr2R 5028514 intergenic not near genes chr2R 5028618 intergenic not near genes chr2R 5028721 intergenic not near genes chr2R_8_5025001 chr2R_5025001 RAL-85 287 chr2R 5256758 5256786 chr2R 5256846 5256873 7 88 10.5 11.0 10.8 0.6 115 chr2R 5256758 intergenic not near genes chr2R 5256816 intergenic not near genes chr2R 5256873 intergenic not near genes chr2R_7_5255001 chr2R_5255001 RAL-85 288 chr2R 5421533 5421544 chr2R 5421615 5421626 4 82 24.0 17.0 20.5 0.2 93 chr2R 5421533 intron laccase2 + chr2R 5421580 intron laccase2 + chr2R 5421626 intron laccase2 + chr2R_4_5420001 chr2R_5420001 RAL-85 289 chr2R 5472365 5472378 chr2R 5472460 5472473 5 95 10.0 6.0 8.0 0.6 108 chr2R 5472365 intron CG30440 - chr2R 5472419 intron CG30440 - chr2R 5472473 intron CG30440 - chr2R_5_5470001 chr2R_5470001 RAL-85 290 chr2R 5476353 5476385 chr2R 5476897 5476929 6 544 12.0 9.0 10.5 0.5 576 chr2R 5476353 intron CG30440 - chr2R 5476641 intron CG30440 - chr2R 5476929 intron CG30440 - chr2R_6_5475001 chr2R_5475001 RAL-85 291 chr2R 5869274 5869308 chr2R 5874350 5874384 flea 6 5076 1.5 1.0 1.2 2.7 5110 chr2R 5869274 intergenic not near genes chr2R 5871829 intergenic not near genes chr2R 5874384 intergenic not near genes chr2R_6_5870001 chr2R_5870001 RAL-85 292 chr2R 5917773 5917804 chr2R 5917852 5917883 9 79 5.5 7.0 6.2 1.2 110 chr2R 5917773 intron CG43366 + chr2R 5917828 intron CG43366 + chr2R 5917883 intron CG43366 + chr2R_9_5915001 chr2R_5915001 RAL-85 293 chr2R 5932800 5932809 chr2R 5932879 5932888 4 79 11.0 9.0 10.0 0.4 88 chr2R 5932800 intergenic not near genes chr2R 5932844 intergenic not near genes chr2R 5932888 intergenic not near genes chr2R_4_5930001 chr2R_5930001 RAL-85 294 chr2R 5947934 5947960 chr2R 5948085 5948110 6 151 10.5 2.0 6.2 0.8 176 chr2R 5947934 intergenic not near genes chr2R 5948022 intergenic not near genes chr2R 5948110 intergenic not near genes chr2R_6_5945001 chr2R_5945001 RAL-85 295 chr2R 6016670 6016704 chr2R 6016974 6017011 6 306 3.0 3.5 3.2 1.4 341 chr2R 6016670 intergenic not near genes chr2R 6016840 intergenic not near genes chr2R 6017011 intergenic not near genes chr2R_6_6015001 chr2R_6015001 RAL-85 296 chr2R 6053072 6053097 chr2R 6053223 6053245 6 150 7.5 7.5 7.5 0.7 173 chr2R 6053072 intron CCHa2-R + chr2R 6053158 intron CCHa2-R + chr2R 6053245 intron CCHa2-R + chr2R_6_6050001 chr2R_6050001 RAL-85 297 chr2R 6065753 6065782 chr2R 6065865 6065893 10 111 3.5 2.0 2.8 2.6 140 chr2R 6065753 intron CCHa2-R + chr2R 6065823 intron CCHa2-R + chr2R 6065893 exon CCHa2-R + chr2R_10_6065001 chr2R_6065001 RAL-85 298 chr2R 6076739 6076763 chr2R 6076835 6076859 5 96 4.5 4.0 4.2 1.0 120 chr2R 6076739 intergenic CG7849 +,CG7845 - chr2R 6076799 intergenic CG7849 +,CG7845 - chr2R 6076859 intergenic CG7849 +,CG7845 - chr2R_5_6075001 chr2R_6075001 RAL-85 299 chr2R 6096714 6096751 chr2R 6101911 6101945 BS 16 5193 4.5 3.5 4.0 3.2 5231 chr2R 6096714 intron EcR - chr2R 6099330 intron EcR - chr2R 6101945 intron EcR - chr2R_16_6095001 chr2R_6095001 RAL-85 300 chr2R 6194687 6194703 chr2R 6194770 6194786 4 83 5.0 6.0 5.5 0.6 99 chr2R 6194687 intron Ptr - chr2R 6194736 intron Ptr - chr2R 6194786 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-85 301 chr2R 6236216 6236242 chr2R 6236303 6236323 7 86 14.0 9.0 11.5 0.6 107 chr2R 6236216 intron bin3 + chr2R 6236270 intron bin3 + chr2R 6236323 intron bin3 + chr2R_7_6235001 chr2R_6235001 RAL-85 302 chr2R 6494526 6494551 chr2R 6499288 6499314 F-element 6 4762 2.5 1.5 2.0 2.0 4788 chr2R 6494526 intergenic not near genes chr2R 6496920 intergenic not near genes chr2R 6499314 intergenic not near genes chr2R_6_6495001 chr2R_6495001 RAL-85 303 chr2R 6532916 6532935 chr2R 6533022 6533041 4 106 13.5 16.5 15.0 0.2 125 chr2R 6532916 intron,3` UTR jing +,CR43905 - chr2R 6532978 intron,3` UTR jing +,CR43905 - chr2R 6533041 intron,3` UTR jing +,CR43905 - chr2R_4_6530001 chr2R_6530001 RAL-85 304 chr2R 6546718 6546736 chr2R 6546818 6546836 4 100 3.0 3.0 3.0 1.0 118 chr2R 6546718 intron jing + chr2R 6546777 intron jing + chr2R 6546836 intron jing + chr2R_4_6545001 chr2R_6545001 RAL-85 305 chr2R 6592229 6592244 chr2R 6592349 6592366 5 120 19.0 13.0 16.0 0.3 137 chr2R 6592229 intron jing + chr2R 6592298 intron jing + chr2R 6592366 intron jing + chr2R_5_6590001 chr2R_6590001 RAL-85 306 chr2R 6806793 6806819 chr2R 6806878 6806904 5 83 7.5 9.5 8.5 0.5 111 chr2R 6806793 intergenic not near genes chr2R 6806848 intergenic not near genes chr2R 6806904 intergenic not near genes chr2R_5_6805001 chr2R_6805001 RAL-85 307 chr2R 6962470 6962478 chr2R 6962827 6962835 4 357 2.0 6.5 4.2 0.8 365 chr2R 6962470 intron,intron mim -,CheB42c - chr2R 6962652 intron,intron mim -,CheB42c - chr2R 6962835 intron,intron mim -,CheB42c - chr2R_4_6960001 chr2R_6960001 RAL-85 308 chr2R 7209848 7209858 chr2R 7217596 7217606 roo 4 7748 0.0 1.0 0.5 2.7 7758 chr2R 7209848 intron pk + chr2R 7213727 intron pk + chr2R 7217606 intron pk + chr2R_4_7210001 chr2R_7210001 RAL-85 309 chr2R 7235819 7235852 chr2R 7240911 7240944 jockey 12 5092 2.5 4.5 3.5 2.7 5125 chr2R 7235819 intergenic not near genes chr2R 7238382 intergenic not near genes chr2R 7240944 intergenic not near genes chr2R_12_7235001 chr2R_7235001 RAL-85 310 chr2R 7250725 7250753 chr2R 7250824 7250852 8 97 9.5 9.5 9.5 0.8 127 chr2R 7250725 intergenic Gadd45 + chr2R 7250788 intergenic Gadd45 + chr2R 7250852 intergenic Gadd45 + chr2R_8_7250001 chr2R_7250001 RAL-85 311 chr2R 7278316 7278322 chr2R 7278544 7278558 4 234 3.0 7.0 5.0 0.7 242 chr2R 7278316 intergenic Br140 -,Incenp + chr2R 7278437 intergenic Incenp +,Br140 - chr2R 7278558 intergenic Incenp +,Br140 - chr2R_4_7275001 chr2R_7275001 RAL-85 312 chr2R 7283674 7283691 chr2R 7283874 7283891 4 200 5.0 7.0 6.0 0.6 217 chr2R 7283674 5` UTR pwn + chr2R 7283782 intron pwn + chr2R 7283891 intron pwn + chr2R_4_7280001 chr2R_7280001 RAL-85 313 chr2R 7310765 7310793 chr2R 7310845 7310875 6 82 8.5 8.5 8.5 0.6 110 chr2R 7310765 intergenic not near genes chr2R 7310820 intergenic not near genes chr2R 7310875 intergenic not near genes chr2R_6_7310001 chr2R_7310001 RAL-85 314 chr2R 7371757 7371780 chr2R 7371861 7371884 4 104 0.5 6.5 3.5 0.9 127 chr2R 7371757 intron Dscam1 - chr2R 7371820 intron Dscam1 - chr2R 7371884 intron Dscam1 - chr2R_4_7370001 chr2R_7370001 RAL-85 315 chr2R 7417905 7418162 chr2R 7417991 7418241 4 84 1.0 0.0 0.5 2.7 336 chr2R 7417905 intergenic not near genes chr2R 7418073 intergenic not near genes chr2R 7418241 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-85 316 chr2R 7434893 7434918 chr2R 7439194 7439219 Juan 5 4301 0.5 2.0 1.2 2.3 4326 chr2R 7434893 intergenic so + chr2R 7437056 intergenic not near genes chr2R 7439219 intergenic not near genes chr2R_5_7435001 chr2R_7435001 RAL-85 317 chr2R 7471988 7472012 chr2R 7472066 7472082 8 78 2.5 2.5 2.5 2.3 94 chr2R 7471988 intron Aldh-III - chr2R 7472035 intron Aldh-III - chr2R 7472082 intron Aldh-III - chr2R_8_7470001 chr2R_7470001 RAL-85 318 chr2R 7608412 7608434 chr2R 7613615 7613637 I-element 6 5202 1.5 2.5 2.0 2.0 5225 chr2R 7608412 intron CG1358 - chr2R 7611024 intron CG1358 - chr2R 7613637 intron CG1358 - chr2R_6_7610001 chr2R_7610001 RAL-85 319 chr2R 7656166 7656184 chr2R 7657311 7657329 5 1145 23.5 29.5 26.5 0.2 1163 chr2R 7656166 exon CG30491 + chr2R 7656748 3` UTR CG30491 + chr2R 7657329 intron CG30495 + chr2R_5_7655001 chr2R_7655001 RAL-85 320 chr2R 7851264 7851285 chr2R 7851349 7851371 6 86 7.5 7.5 7.5 0.7 107 chr2R 7851264 intron Dgk - chr2R 7851318 intron Dgk - chr2R 7851371 intron Dgk - chr2R_6_7850001 chr2R_7850001 RAL-85 321 chr2R 7869188 7869214 chr2R 7873974 7874000 Doc 4 4786 2.5 1.5 2.0 1.3 4812 chr2R 7869188 intron Dgk - chr2R 7871594 intron Dgk - chr2R 7874000 intron Dgk - chr2R_4_7870001 chr2R_7870001 RAL-85 322 chr2R 8015653 8015680 chr2R 8017672 8017703 7 2022 3.5 6.0 4.8 1.2 2050 chr2R 8015653 intergenic mir-4981 + chr2R 8016678 intergenic not near genes chr2R 8017703 intergenic not near genes chr2R_7_8015001 chr2R_8015001 RAL-85 323 chr2R 8089255 8089286 chr2R 8089341 8089372 7 86 0.0 1.0 0.5 4.7 117 chr2R 8089255 3` UTR sut2 + chr2R 8089314 intergenic sut2 +,sut3 + chr2R 8089372 intergenic sut2 +,sut3 + chr2R_7_8085001 chr2R_8085001 RAL-85 324 chr2R 8105934 8105961 chr2R 8106025 8106051 6 90 7.5 8.0 7.8 0.7 117 chr2R 8105934 5` UTR Cul4 - chr2R 8105992 intron Cul4 - chr2R 8106051 5` UTR Cul4 - chr2R_6_8105001 chr2R_8105001 RAL-85 325 chr2R 8160934 8160953 chr2R 8161024 8161043 1360 8 90 8.5 9.5 9.0 0.8 109 chr2R 8160934 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161043 intron CG8708 - chr2R_8_8160001 chr2R_8160001 RAL-85 326 chr2R 8249561 8249594 chr2R 8249643 8249676 4 82 1.5 0.5 1.0 2.0 115 chr2R 8249561 5` UTR CG44439 - chr2R 8249618 intergenic CG44439 - chr2R 8249676 intergenic CG44439 - chr2R_4_8245001 chr2R_8245001 RAL-85 327 chr2R 8261626 8261663 chr2R 8261713 8261750 11 87 7.0 7.0 7.0 1.4 124 chr2R 8261626 intergenic CG2291 - chr2R 8261688 intergenic CG2291 - chr2R 8261750 intergenic CG2291 - chr2R_11_8260001 chr2R_8260001 RAL-85 328 chr2R 8277637 8277667 chr2R 8277730 8277761 7 95 14.0 11.5 12.8 0.5 124 chr2R 8277637 5` UTR CR44280 + chr2R 8277699 5` UTR CR44280 + chr2R 8277761 5` UTR CR44280 + chr2R_7_8275001 chr2R_8275001 RAL-85 329 chr2R 8321873 8321885 chr2R 8321984 8321996 9 110 10.0 12.0 11.0 0.8 123 chr2R 8321873 intergenic not near genes chr2R 8321934 intergenic not near genes chr2R 8321996 intergenic not near genes chr2R_9_8320001 chr2R_8320001 RAL-85 330 chr2R 8398219 8398241 chr2R 8402997 8403022 Doc 6 4780 4.5 2.5 3.5 1.3 4803 chr2R 8398219 intron CG2121 - chr2R 8400620 intron CG2121 - chr2R 8403022 intron CG2121 - chr2R_6_8400001 chr2R_8400001 RAL-85 331 chr2R 8565383 8565407 chr2R 8565462 8565485 7 78 11.0 15.0 13.0 0.5 102 chr2R 8565383 exon Cyp6a14 - chr2R 8565434 exon Cyp6a14 - chr2R 8565485 exon Cyp6a14 - chr2R_7_8565001 chr2R_8565001 RAL-85 332 chr2R 8566033 8566061 chr2R 8566985 8567007 1360 5 950 1.5 0.5 1.0 2.5 974 chr2R 8566033 5` UTR Cyp6a14 - chr2R 8566520 5` UTR Cyp6a14 - chr2R 8567007 5` UTR Cyp6a14 - chr2R_5_8565001 chr2R_8565001 RAL-85 333 chr2R 8722770 8722793 chr2R 8723011 8723034 pogo 6 240 3.5 6.5 5.0 1.0 264 chr2R 8722770 intron CG14767 - chr2R 8722902 intron CG14767 - chr2R 8723034 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-85 334 chr2R 8764121 8764132 chr2R 8764270 8764281 5 149 5.5 17.5 11.5 0.4 160 chr2R 8764121 intergenic not near genes chr2R 8764201 intergenic not near genes chr2R 8764281 intergenic not near genes chr2R_5_8760001 chr2R_8760001 RAL-85 335 chr2R 9031983 9032012 chr2R 9032061 9032090 6 78 1.5 1.5 1.5 2.4 107 chr2R 9031983 intergenic not near genes chr2R 9032036 intergenic not near genes chr2R 9032090 intergenic not near genes chr2R_6_9030001 chr2R_9030001 RAL-85 336 chr2R 9052712 9052727 chr2R 9052792 9052808 5 81 7.5 6.0 6.8 0.6 96 chr2R 9052712 intron CG13743 - chr2R 9052760 intron CG13743 - chr2R 9052808 intron CG13743 - chr2R_5_9050001 chr2R_9050001 RAL-85 337 chr2R 9055437 9055466 chr2R 9055565 9055586 10 127 10.5 13.0 11.8 0.8 149 chr2R 9055437 intron CG13743 - chr2R 9055512 intron CG13743 - chr2R 9055586 intron CG13743 - chr2R_10_9055001 chr2R_9055001 RAL-85 338 chr2R 9151305 9151313 chr2R 9157775 9157783 Burdock 4 6470 7.5 0.5 4.0 0.8 6478 chr2R 9151305 3` UTR CG30345 + chr2R 9154544 intergenic not near genes chr2R 9157783 intergenic CG8008 - chr2R_4_9150001 chr2R_9150001 RAL-85 339 chr2R 9165415 9165459 chr2R 9171758 9171795 4 6338 1.0 12.0 6.5 0.5 6380 chr2R 9165415 intergenic Rad51C +,CG8046 - chr2R 9168605 intron Rme-8 - chr2R 9171795 intron Rme-8 - chr2R_4_9165001 chr2R_9165001 RAL-85 340 chr2R 9212692 9212723 chr2R 9213178 9213209 roo 13 483 5.5 4.5 5.0 2.2 517 chr2R 9212692 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213209 5` UTR CR45309 + chr2R_13_9210001 chr2R_9210001 RAL-85 341 chr2R 9230226 9230236 chr2R 9230306 9230315 4 80 5.5 4.0 4.8 0.7 89 chr2R 9230226 intron hig - chr2R 9230270 intron hig - chr2R 9230315 exon hig - chr2R_4_9230001 chr2R_9230001 RAL-85 342 chr2R 9279012 9279043 chr2R 9279113 9279145 6 101 8.0 6.5 7.2 0.7 133 chr2R 9279012 intron Pkn - chr2R 9279078 intron Pkn - chr2R 9279145 intron Pkn - chr2R_6_9275001 chr2R_9275001 RAL-85 343 chr2R 9368130 9368151 chr2R 9368206 9368226 11 75 2.0 0.0 1.0 5.5 96 chr2R 9368130 intron CG13954 - chr2R 9368178 intron CG13954 - chr2R 9368226 intron CG13954 - chr2R_11_9365001 chr2R_9365001 RAL-85 344 chr2R 9378111 9378142 chr2R 9378191 9378224 6 82 13.0 16.5 14.8 0.4 113 chr2R 9378111 intron CG13954 - chr2R 9378168 intron CG13954 - chr2R 9378224 intron CG13954 - chr2R_6_9375001 chr2R_9375001 RAL-85 345 chr2R 9461240 9461251 chr2R 9461329 9461340 5 89 7.0 10.5 8.8 0.5 100 chr2R 9461240 intron Camta + chr2R 9461290 intron Camta + chr2R 9461340 intron Camta + chr2R_5_9460001 chr2R_9460001 RAL-85 346 chr2R 9500458 9500483 chr2R 9500522 9500559 6 73 7.5 8.5 8.0 0.7 101 chr2R 9500458 intron Wnt2 + chr2R 9500508 intron Wnt2 + chr2R 9500559 intron Wnt2 + chr2R_6_9500001 chr2R_9500001 RAL-85 347 chr2R 9510664 9510698 chr2R 9510780 9510814 11 116 11.0 9.0 10.0 1.0 150 chr2R 9510664 intron brp + chr2R 9510739 intron brp + chr2R 9510814 intron brp + chr2R_11_9510001 chr2R_9510001 RAL-85 348 chr2R 9550471 9550493 chr2R 9550557 9550580 4 87 7.0 6.0 6.5 0.5 109 chr2R 9550471 intergenic not near genes chr2R 9550526 intergenic not near genes chr2R 9550580 intergenic not near genes chr2R_4_9550001 chr2R_9550001 RAL-85 349 chr2R 9778179 9778215 chr2R 9778270 9778306 5 91 0.0 2.0 1.0 2.5 127 chr2R 9778179 intron CG1688 - chr2R 9778242 intron CG1688 - chr2R 9778306 intron CG1688 - chr2R_5_9775001 chr2R_9775001 RAL-85 350 chr2R 9871042 9871074 chr2R 9871524 9871560 roo 10 485 1.0 2.0 1.5 4.0 518 chr2R 9871042 intron cbx - chr2R 9871301 intron cbx - chr2R 9871560 intron,5` UTR cbx -,CG18446 + chr2R_10_9870001 chr2R_9870001 RAL-85 351 chr2R 9925913 9925929 chr2R 9926027 9926043 7 114 5.0 2.0 3.5 1.6 130 chr2R 9925913 intron Mef2 - chr2R 9925978 intron Mef2 - chr2R 9926043 intron Mef2 - chr2R_7_9925001 chr2R_9925001 RAL-85 352 chr2R 9945429 9945455 chr2R 9945625 9945651 BS 8 196 5.5 0.0 2.8 2.1 222 chr2R 9945429 intron Mef2 - chr2R 9945540 intron Mef2 - chr2R 9945651 intron Mef2 - chr2R_8_9945001 chr2R_9945001 RAL-85 353 chr2R 10005847 10005880 chr2R 10007012 10007045 1360 14 1164 6.5 6.0 6.2 1.9 1198 chr2R 10005847 intron Pka-R2 - chr2R 10006446 intron Pka-R2 - chr2R 10007045 intron Pka-R2 - chr2R_14_10005001 chr2R_10005001 RAL-85 354 chr2R 10040919 10040935 chr2R 10041001 10041017 4 82 0.0 0.5 0.2 3.3 98 chr2R 10040919 intron oys - chr2R 10040968 intron oys - chr2R 10041017 intron oys - chr2R_4_10040001 chr2R_10040001 RAL-85 355 chr2R 10186340 10186363 chr2R 10186429 10186452 7 89 2.0 4.0 3.0 1.8 112 chr2R 10186340 intron KCNQ - chr2R 10186396 intron KCNQ - chr2R 10186452 intron KCNQ - chr2R_7_10185001 chr2R_10185001 RAL-85 356 chr2R 10190442 10190465 chr2R 10190524 10190548 6 78 3.0 4.0 3.5 1.3 106 chr2R 10190442 intron KCNQ - chr2R 10190495 intron KCNQ - chr2R 10190548 intron KCNQ - chr2R_6_10190001 chr2R_10190001 RAL-85 357 chr2R 10216205 10216224 chr2R 10216283 10216302 6 78 0.0 2.0 1.0 3.0 97 chr2R 10216205 intron,intron CG12912 -,Hr46 - chr2R 10216254 intron,intron CG12912 -,Hr46 - chr2R 10216302 intron,intron CG12912 -,Hr46 - chr2R_6_10215001 chr2R_10215001 RAL-85 358 chr2R 10289683 10289708 chr2R 10289810 10289833 8 126 2.0 5.0 3.5 1.8 150 chr2R 10289683 intron CAP + chr2R 10289758 intron CAP + chr2R 10289833 intron CAP + chr2R_8_10285001 chr2R_10285001 RAL-85 359 chr2R 10319718 10319739 chr2R 10319810 10319831 6 92 4.5 2.5 3.5 1.3 113 chr2R 10319718 intron Ndg + chr2R 10319774 intron Ndg + chr2R 10319831 intron Ndg + chr2R_6_10315001 chr2R_10315001 RAL-85 360 chr2R 10352673 10352700 chr2R 10352750 10352777 8 77 1.0 2.0 1.5 3.2 104 chr2R 10352673 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352725 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352777 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_8_10350001 chr2R_10350001 RAL-85 361 chr2R 10454097 10454122 chr2R 10454174 10454198 6 77 2.0 1.5 1.8 2.1 101 chr2R 10454097 intron,intron Galphao +,Cyp49a1 - chr2R 10454148 intron,intron Galphao +,Cyp49a1 - chr2R 10454198 intron,intron Galphao +,Cyp49a1 - chr2R_6_10450001 chr2R_10450001 RAL-85 362 chr2R 10585574 10585591 chr2R 10594157 10594174 Tirant 6 8583 1.5 2.5 2.0 2.0 8600 chr2R 10585574 intron psq + chr2R 10589874 intron psq + chr2R 10594174 intron psq + chr2R_6_10585001 chr2R_10585001 RAL-85 363 chr2R 10761557 10761578 chr2R 10761711 10761732 9 154 3.0 4.0 3.5 2.0 175 chr2R 10761557 intron,5` UTR CG33144 -,CR43605 + chr2R 10761644 intron,5` UTR CG33144 -,CR43605 + chr2R 10761732 intron CG33144 - chr2R_9_10760001 chr2R_10760001 RAL-85 364 chr2R 10796715 10796736 chr2R 10796814 10796834 5 99 4.0 3.0 3.5 1.1 119 chr2R 10796715 intron CG33144 - chr2R 10796774 intron CG33144 - chr2R 10796834 intron CG33144 - chr2R_5_10795001 chr2R_10795001 RAL-85 365 chr2R 10948038 10948048 chr2R 10955589 10955598 17.6 5 7551 5.0 9.5 7.2 0.6 7560 chr2R 10948038 intergenic not near genes chr2R 10951818 intergenic not near genes chr2R 10955598 intergenic not near genes chr2R_5_10950001 chr2R_10950001 RAL-85 366 chr2R 10960311 10960338 chr2R 10960445 10960472 5 133 8.5 8.0 8.2 0.5 161 chr2R 10960311 intergenic not near genes chr2R 10960392 intergenic not near genes chr2R 10960472 intergenic not near genes chr2R_5_10960001 chr2R_10960001 RAL-85 367 chr2R 11009812 11009848 chr2R 11018986 11019022 roo 9 9171 2.0 1.5 1.8 3.2 9210 chr2R 11009812 intron luna - chr2R 11014417 intron luna - chr2R 11019022 intron luna - chr2R_9_11010001 chr2R_11010001 RAL-85 368 chr2R 11019876 11019895 chr2R 11024942 11024956 jockey 5 5064 4.5 2.5 3.5 1.1 5080 chr2R 11019876 intron luna - chr2R 11022416 intron luna - chr2R 11024956 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-85 369 chr2R 11034296 11034317 chr2R 11034504 11034525 6 208 13.5 11.0 12.2 0.5 229 chr2R 11034296 intron luna - chr2R 11034410 intron luna - chr2R 11034525 intron luna - chr2R_6_11030001 chr2R_11030001 RAL-85 370 chr2R 11071566 11071591 chr2R 11071670 11071696 4 105 7.0 7.5 7.2 0.5 130 chr2R 11071566 intron luna - chr2R 11071631 intron luna - chr2R 11071696 intron luna - chr2R_4_11070001 chr2R_11070001 RAL-85 371 chr2R 11161098 11161111 chr2R 11161354 11161366 4 256 13.0 5.0 9.0 0.4 268 chr2R 11161098 intron,intron CG13229 -,shn + chr2R 11161232 intron,intron CG13229 -,shn + chr2R 11161366 intron,intron CG13229 -,shn + chr2R_4_11160001 chr2R_11160001 RAL-85 372 chr2R 11207813 11207830 chr2R 11208005 11208022 BS 10 193 7.5 0.5 4.0 2.0 209 chr2R 11207813 intron shn + chr2R 11207918 intron shn + chr2R 11208022 intron shn + chr2R_10_11205001 chr2R_11205001 RAL-85 373 chr2R 11366164 11366178 chr2R 11366243 11366257 4 79 7.0 3.0 5.0 0.7 93 chr2R 11366164 intergenic not near genes chr2R 11366210 intergenic CG13204 + chr2R 11366257 intergenic CG13204 + chr2R_4_11365001 chr2R_11365001 RAL-85 374 chr2R 11392423 11392449 chr2R 11392509 11392535 9 86 1.5 3.5 2.5 2.6 112 chr2R 11392423 intron sprt - chr2R 11392479 intron sprt - chr2R 11392535 intron sprt - chr2R_9_11390001 chr2R_11390001 RAL-85 375 chr2R 11415519 11415534 chr2R 11418667 11418683 opus 4 3149 2.0 3.0 2.5 1.1 3164 chr2R 11415519 intron Drip - chr2R 11417101 intron Drip - chr2R 11418683 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-85 376 chr2R 11472648 11472673 chr2R 11473845 11473869 pogo 7 1197 3.5 1.0 2.2 2.2 1221 chr2R 11472648 intergenic not near genes chr2R 11473258 intergenic not near genes chr2R 11473869 intergenic not near genes chr2R_7_11470001 chr2R_11470001 RAL-85 377 chr2R 11485117 11485147 chr2R 11485195 11485229 11 80 3.5 3.5 3.5 2.4 112 chr2R 11485117 intron inv + chr2R 11485173 intron inv + chr2R 11485229 intron inv + chr2R_11_11485001 chr2R_11485001 RAL-85 378 chr2R 11668030 11668048 chr2R 11668300 11668323 5 274 2.5 2.0 2.2 1.6 293 chr2R 11668030 intron,intron Roc2 -,Tret1-1 + chr2R 11668176 intron,intron Roc2 -,Tret1-1 + chr2R 11668323 intron,intron Roc2 -,Tret1-1 + chr2R_5_11665001 chr2R_11665001 RAL-85 379 chr2R 11677871 11677897 chr2R 11677949 11677975 5 78 1.5 1.0 1.2 2.3 104 chr2R 11677871 intron,exon Roc2 -,Tret1-2 + chr2R 11677923 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677975 intron,3` UTR Roc2 -,Tret1-2 + chr2R_5_11675001 chr2R_11675001 RAL-85 380 chr2R 11719836 11719863 chr2R 11720027 11720054 4 190 3.5 2.0 2.8 1.1 218 chr2R 11719836 intron pyr + chr2R 11719945 intron pyr + chr2R 11720054 intron pyr + chr2R_4_11715001 chr2R_11715001 RAL-85 381 chr2R 11822977 11823003 chr2R 11823054 11823080 7 77 3.0 2.5 2.8 1.8 103 chr2R 11822977 intergenic not near genes chr2R 11823028 intergenic not near genes chr2R 11823080 intergenic not near genes chr2R_7_11820001 chr2R_11820001 RAL-85 382 chr2R 11932726 11932744 chr2R 11932997 11933014 4 271 0.5 1.5 1.0 2.0 288 chr2R 11932726 intergenic not near genes chr2R 11932870 intergenic not near genes chr2R 11933014 intergenic not near genes chr2R_4_11930001 chr2R_11930001 RAL-85 383 chr2R 8518780 8518803 chr2R 12066181 12066198 10 3547395 7.0 12.0 9.5 1.0 3547418 chr2R 8518780 intron mtt - chr2R 10292489 intron CAP + chr2R 12066198 intron CG8888 - chr2R_10_10290001 chr2R_10290001 RAL-85 384 chr2R 12093952 12093965 chr2R 12094065 12094078 4 111 0.0 2.0 1.0 2.0 126 chr2R 12093952 intron jeb - chr2R 12094015 intron jeb - chr2R 12094078 intron jeb - chr2R_4_12090001 chr2R_12090001 RAL-85 385 chr2R 12124832 12124855 chr2R 12124916 12124939 6 84 3.5 5.0 4.2 1.2 107 chr2R 12124832 intergenic not near genes chr2R 12124886 intergenic not near genes chr2R 12124939 intergenic not near genes chr2R_6_12120001 chr2R_12120001 RAL-85 386 chr2R 12187471 12187508 chr2R 12190088 12190124 55 2619 127.5 92.5 110.0 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_55_12185001 chr2R_12185001 RAL-85 387 chr2R 12363395 12363416 chr2R 12363827 12363847 6 432 0.5 0.0 0.2 5.0 452 chr2R 12363395 intergenic CG30043 + chr2R 12363621 intergenic CG30043 + chr2R 12363847 intergenic not near genes chr2R_6_12360001 chr2R_12360001 RAL-85 388 chr2R 12481158 12481170 chr2R 12482939 12482954 roo 8 1791 1.5 4.0 2.8 2.1 1796 chr2R 12481158 exon Dh44-R2 + chr2R 12482056 intron Dh44-R2 + chr2R 12482954 intron Dh44-R2 + chr2R_8_12480001 chr2R_12480001 RAL-85 389 chr2R 12501693 12501727 chr2R 12503855 12503889 Rt1c 15 2158 3.5 5.5 4.5 2.7 2196 chr2R 12501693 intron fdl - chr2R 12502791 intron fdl - chr2R 12503889 intron fdl - chr2R_15_12500001 chr2R_12500001 RAL-85 390 chr2R 12536130 12536149 chr2R 12536288 12536307 6 158 6.0 3.0 4.5 1.1 177 chr2R 12536130 intron fra + chr2R 12536218 intron fra + chr2R 12536307 intron fra + chr2R_6_12535001 chr2R_12535001 RAL-85 391 chr2R 12643810 12643819 chr2R 12643887 12643896 4 77 0.5 5.0 2.8 1.1 86 chr2R 12643810 intron CG8785 - chr2R 12643853 intron CG8785 - chr2R 12643896 exon CG8785 - chr2R_4_12640001 chr2R_12640001 RAL-85 392 chr2R 12739136 12739155 chr2R 12739208 12739231 8 75 2.5 2.0 2.2 2.5 95 chr2R 12739136 intron CG42663 + chr2R 12739184 intron CG42663 + chr2R 12739231 intron CG42663 + chr2R_8_12735001 chr2R_12735001 RAL-85 393 chr2R 12789299 12789326 chr2R 12797662 12797689 roo 6 8363 1.5 4.5 3.0 1.5 8390 chr2R 12789299 intron,3` UTR sca +,CR45137 - chr2R 12793494 intron,intron sca +,CR45137 - chr2R 12797689 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-85 394 chr2R 13089753 13089773 chr2R 13089863 13089883 8 108 4.0 5.0 4.5 1.5 130 chr2R 13089753 intergenic not near genes chr2R 13089818 intergenic not near genes chr2R 13089883 intergenic not near genes chr2R_8_13085001 chr2R_13085001 RAL-85 395 chr2R 13136845 13136867 chr2R 13141643 13141665 Doc 15 4797 4.0 4.5 4.2 2.9 4820 chr2R 13136845 exon Cap-G + chr2R 13139255 intron Cap-G + chr2R 13141665 intron Cap-G + chr2R_15_13135001 chr2R_13135001 RAL-85 396 chr2R 13249574 13249596 chr2R 13249663 13249685 5 89 0.0 0.0 0.0 5.0 111 chr2R 13249574 intron CG4712 - chr2R 13249630 intron CG4712 - chr2R 13249685 intron CG4712 - chr2R_5_13245001 chr2R_13245001 RAL-85 397 chr2R 13309660 13309672 chr2R 13309778 13309790 5 118 2.0 0.0 1.0 2.5 130 chr2R 13309660 intergenic not near genes chr2R 13309725 intergenic not near genes chr2R 13309790 intergenic not near genes chr2R_5_13305001 chr2R_13305001 RAL-85 398 chr2R 13359476 13359507 chr2R 13360139 13360170 6 663 2.0 4.5 3.2 1.4 694 chr2R 13359476 intergenic not near genes chr2R 13359823 intergenic not near genes chr2R 13360170 intergenic not near genes chr2R_6_13355001 chr2R_13355001 RAL-85 399 chr2R 13498959 13498983 chr2R 13499053 13499068 6 92 1.5 1.5 1.5 2.4 109 chr2R 13498959 intron drk - chr2R 13499014 intron drk - chr2R 13499068 intron drk - chr2R_6_13495001 chr2R_13495001 RAL-85 400 chr2R 13580509 13580530 chr2R 13580855 13580880 jockey 6 349 0.0 4.5 2.2 1.9 371 chr2R 13580509 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580880 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_6_13580001 chr2R_13580001 RAL-85 401 chr2R 13634150 13634172 chr2R 13634237 13634239 5 83 1.5 4.5 3.0 1.2 89 chr2R 13634150 intron fas + chr2R 13634194 intron fas + chr2R 13634239 intron fas + chr2R_5_13630001 chr2R_13630001 RAL-85 402 chr2R 13642060 13642091 chr2R 13642137 13642168 5 70 2.0 1.5 1.8 1.8 108 chr2R 13642060 intron fas + chr2R 13642114 intron fas + chr2R 13642168 intron fas + chr2R_5_13640001 chr2R_13640001 RAL-85 403 chr2R 13721213 13721227 chr2R 13721287 13721301 4 77 6.5 5.5 6.0 0.6 88 chr2R 13721213 intron fas + chr2R 13721257 intron fas + chr2R 13721301 intron fas + chr2R_4_13720001 chr2R_13720001 RAL-85 404 chr2R 13768985 13769008 chr2R 13769084 13769107 4 99 2.0 4.5 3.2 1.0 122 chr2R 13768985 intergenic not near genes chr2R 13769046 intergenic not near genes chr2R 13769107 intergenic not near genes chr2R_4_13765001 chr2R_13765001 RAL-85 405 chr2R 13793156 13793161 chr2R 13793229 13793234 5 74 5.0 3.5 4.2 1.0 78 chr2R 13793156 intergenic not near genes chr2R 13793195 intergenic not near genes chr2R 13793234 intergenic not near genes chr2R_5_13790001 chr2R_13790001 RAL-85 406 chr2R 13905603 13905633 chr2R 13907585 13907615 Rt1a 10 1982 3.0 3.5 3.2 2.4 2012 chr2R 13905603 intron shot - chr2R 13906609 intron shot - chr2R 13907615 intron shot - chr2R_10_13905001 chr2R_13905001 RAL-85 407 chr2R 14042314 14042327 chr2R 14042396 14042409 4 82 1.0 2.5 1.8 1.4 95 chr2R 14042314 intron mam + chr2R 14042362 intron mam + chr2R 14042409 intron mam + chr2R_4_14040001 chr2R_14040001 RAL-85 408 chr2R 14222417 14222446 chr2R 14222512 14222541 12 92 4.0 3.0 3.5 2.7 124 chr2R 14222417 intron CG8468 + chr2R 14222479 intron CG8468 + chr2R 14222541 intron CG8468 + chr2R_12_14220001 chr2R_14220001 RAL-85 409 chr2R 14393866 14393899 chr2R 14393951 14393984 17 85 3.5 2.5 3.0 4.2 118 chr2R 14393866 intergenic not near genes chr2R 14393925 intergenic not near genes chr2R 14393984 intergenic not near genes chr2R_17_14390001 chr2R_14390001 RAL-85 410 chr2R 14467306 14467327 chr2R 14476464 14476485 roo 10 9157 0.5 3.0 1.8 3.6 9179 chr2R 14467306 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_10_14470001 chr2R_14470001 RAL-85 411 chr2R 14536239 14536259 chr2R 14536369 14536389 5 130 1.0 0.0 0.5 3.3 150 chr2R 14536239 intron ttv + chr2R 14536314 intron ttv + chr2R 14536389 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-85 412 chr2R 14566450 14566476 chr2R 14566537 14566563 5 87 1.5 3.0 2.2 1.6 113 chr2R 14566450 intron ttv + chr2R 14566506 intron ttv + chr2R 14566563 intron ttv + chr2R_5_14565001 chr2R_14565001 RAL-85 413 chr2R 14567003 14567014 chr2R 14567086 14567096 4 83 4.5 0.5 2.5 1.1 93 chr2R 14567003 intron ttv + chr2R 14567050 intron ttv + chr2R 14567096 intron ttv + chr2R_4_14565001 chr2R_14565001 RAL-85 414 chr2R 14737634 14737642 chr2R 14737717 14737726 4 84 4.0 4.0 4.0 0.8 92 chr2R 14737634 3` UTR CR43428 - chr2R 14737680 3` UTR CR43428 - chr2R 14737726 3` UTR CR43428 - chr2R_4_14735001 chr2R_14735001 RAL-85 415 chr2R 14855038 14855046 chr2R 14855130 14855138 4 92 5.5 1.5 3.5 0.9 100 chr2R 14855038 5` UTR Ciao1 - chr2R 14855088 intergenic Ciao1 -,HPS1 + chr2R 14855138 intergenic Ciao1 -,HPS1 + chr2R_4_14855001 chr2R_14855001 RAL-85 416 chr2R 14917851 14917875 chr2R 14917933 14917960 9 85 3.0 2.5 2.8 2.4 109 chr2R 14917851 intron CG10249 - chr2R 14917906 intron CG10249 - chr2R 14917960 intron CG10249 - chr2R_9_14915001 chr2R_14915001 RAL-85 417 chr2R 14922144 14922173 chr2R 14922217 14922249 9 75 4.0 1.5 2.8 2.4 105 chr2R 14922144 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922249 intron CG10249 - chr2R_9_14920001 chr2R_14920001 RAL-85 418 chr2R 14985451 14985477 chr2R 14985527 14985553 9 75 3.0 0.5 1.8 3.2 102 chr2R 14985451 intron pcs + chr2R 14985502 intron pcs + chr2R 14985553 intron pcs + chr2R_9_14985001 chr2R_14985001 RAL-85 419 chr2R 15004731 15004749 chr2R 15005060 15005078 jockey 6 329 0.0 1.5 0.8 3.3 347 chr2R 15004731 intergenic not near genes chr2R 15004904 intergenic not near genes chr2R 15005078 intergenic not near genes chr2R_6_15000001 chr2R_15000001 RAL-85 420 chr2R 15015463 15015485 chr2R 15022887 15022909 mdg1 7 7424 2.5 5.5 4.0 1.4 7446 chr2R 15015463 intron hbs + chr2R 15019186 intron hbs + chr2R 15022909 intron hbs + chr2R_7_15015001 chr2R_15015001 RAL-85 421 chr2R 15027488 15027520 chr2R 15027576 15027591 14 84 5.0 2.0 3.5 3.1 103 chr2R 15027488 intron hbs + chr2R 15027540 intron hbs + chr2R 15027591 intron hbs + chr2R_14_15025001 chr2R_15025001 RAL-85 422 chr2R 15119316 15119347 chr2R 15127797 15127828 Tirant 11 8481 5.5 8.0 6.8 1.4 8512 chr2R 15119316 intron chn + chr2R 15123572 intron chn + chr2R 15127828 intron chn + chr2R_11_15120001 chr2R_15120001 RAL-85 423 chr2R 15500962 15500994 chr2R 15501040 15501072 10 76 6.0 4.5 5.2 1.6 110 chr2R 15500962 exon Ir52a + chr2R 15501017 exon Ir52a + chr2R 15501072 exon Ir52a + chr2R_10_15500001 chr2R_15500001 RAL-85 424 chr2R 15685363 15685382 chr2R 15685466 15685485 6 103 5.5 2.0 3.8 1.2 122 chr2R 15685363 intron,exon Ranbp11 +,CG30082 - chr2R 15685424 intron,intron Ranbp11 +,CG30082 - chr2R 15685485 intron,intron Ranbp11 +,CG30082 - chr2R_6_15685001 chr2R_15685001 RAL-85 425 chr2R 15696521 15696549 chr2R 15696644 15696672 8 123 1.5 2.0 1.8 2.9 151 chr2R 15696521 intergenic CG33461 +,CG33462 + chr2R 15696596 intergenic CG33461 +,CG33462 + chr2R 15696672 intergenic CG33462 +,CG33461 + chr2R_8_15695001 chr2R_15695001 RAL-85 426 chr2R 15833527 15833553 chr2R 15833613 15833640 6 87 3.0 2.5 2.8 1.6 113 chr2R 15833527 intron,intron tun +,Poxn - chr2R 15833584 intron,intron tun +,Poxn - chr2R 15833640 intron,intron tun +,Poxn - chr2R_6_15830001 chr2R_15830001 RAL-85 427 chr2R 15930380 15930387 chr2R 15930457 15930457 4 75 11.0 0.0 5.5 0.6 77 chr2R 15930380 intron bdg - chr2R 15930418 intron bdg - chr2R 15930457 intron bdg - chr2R_4_15930001 chr2R_15930001 RAL-85 428 chr2R 16119886 16119921 chr2R 16120010 16120035 13 122 3.5 2.0 2.8 3.4 149 chr2R 16119886 5` UTR Jhe + chr2R 16119960 intron Jhe + chr2R 16120035 intron Jhe + chr2R_13_16115001 chr2R_16115001 RAL-85 429 chr2R 16372824 16372837 chr2R 16372961 16372980 4 143 5.0 4.5 4.8 0.7 156 chr2R 16372824 intergenic not near genes chr2R 16372902 intergenic not near genes chr2R 16372980 intergenic not near genes chr2R_4_16370001 chr2R_16370001 RAL-85 430 chr2R 16449952 16449969 chr2R 16450131 16450148 5 179 4.5 2.5 3.5 1.1 196 chr2R 16449952 intergenic not near genes chr2R 16450050 intergenic not near genes chr2R 16450148 intergenic not near genes chr2R_5_16450001 chr2R_16450001 RAL-85 431 chr2R 16775652 16775672 chr2R 16775913 16775936 5 263 0.0 1.0 0.5 3.3 284 chr2R 16775652 3` UTR Arp53D + chr2R 16775794 intergenic Arp53D + chr2R 16775936 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-85 432 chr2R 16902761 16902784 chr2R 16902882 16902905 4 120 3.5 2.0 2.8 1.1 144 chr2R 16902761 intergenic not near genes chr2R 16902833 intergenic not near genes chr2R 16902905 intergenic not near genes chr2R_4_16900001 chr2R_16900001 RAL-85 433 chr2R 16910231 16910245 chr2R 16910329 16910343 7 98 2.5 3.5 3.0 1.8 112 chr2R 16910231 intergenic not near genes chr2R 16910287 intergenic not near genes chr2R 16910343 intergenic not near genes chr2R_7_16910001 chr2R_16910001 RAL-85 434 chr2R 16983622 16983656 chr2R 16983703 16983736 6 81 0.0 3.5 1.8 2.1 114 chr2R 16983622 intron Cbp53E + chr2R 16983679 intron Cbp53E + chr2R 16983736 intron Cbp53E + chr2R_6_16980001 chr2R_16980001 RAL-85 435 chr2R 17147246 17147269 chr2R 17152277 17152300 jockey 7 5030 1.0 2.0 1.5 2.8 5054 chr2R 17147246 intergenic not near genes chr2R 17149773 intergenic not near genes chr2R 17152300 intergenic not near genes chr2R_7_17145001 chr2R_17145001 RAL-85 436 chr2R 17157065 17157098 chr2R 17157168 17157201 8 102 1.5 2.0 1.8 2.9 136 chr2R 17157065 3` UTR,3` UTR CG17290 +,CG17287 - chr2R 17157133 3` UTR CG17287 - chr2R 17157201 exon CG17287 - chr2R_8_17155001 chr2R_17155001 RAL-85 437 chr2R 17236508 17236539 chr2R 17241712 17241743 copia 6 5204 2.0 4.0 3.0 1.5 5235 chr2R 17236508 intron mbl + chr2R 17239126 intron mbl + chr2R 17241743 intron mbl + chr2R_6_17235001 chr2R_17235001 RAL-85 438 chr2R 17290848 17290881 chr2R 17291024 17291055 11 176 2.5 1.5 2.0 3.7 207 chr2R 17290848 intron mbl + chr2R 17290952 intron mbl + chr2R 17291055 intron mbl + chr2R_11_17290001 chr2R_17290001 RAL-85 439 chr2R 17377245 17377275 chr2R 17377329 17377351 9 83 0.5 1.0 0.8 5.0 106 chr2R 17377245 3` UTR mbl + chr2R 17377298 3` UTR mbl + chr2R 17377351 3` UTR mbl + chr2R_9_17375001 chr2R_17375001 RAL-85 440 chr2R 17383953 17383977 chr2R 17384041 17384065 9 88 2.0 1.0 1.5 3.6 112 chr2R 17383953 intergenic not near genes chr2R 17384009 intergenic not near genes chr2R 17384065 intergenic not near genes chr2R_9_17380001 chr2R_17380001 RAL-85 441 chr2R 17443784 17443803 chr2R 17443860 17443879 4 76 0.5 1.0 0.8 2.2 95 chr2R 17443784 intron EDTP - chr2R 17443832 intron EDTP - chr2R 17443879 intron EDTP - chr2R_4_17440001 chr2R_17440001 RAL-85 442 chr2R 17627750 17627778 chr2R 17628077 17628105 7 327 2.5 2.5 2.5 2.0 355 chr2R 17627750 intron CG10936 - chr2R 17627928 intron CG10936 - chr2R 17628105 intron CG10936 - chr2R_7_17625001 chr2R_17625001 RAL-85 443 chr2R 17784025 17784054 chr2R 17784266 17784295 pogo 18 241 5.5 7.0 6.2 2.5 270 chr2R 17784025 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784295 intergenic mir-31a - chr2R_18_17780001 chr2R_17780001 RAL-85 444 chr2R 17846780 17846814 chr2R 17846864 17846898 14 83 3.0 4.0 3.5 3.1 118 chr2R 17846780 intron,5` UTR olf186-F +,olf186-M + chr2R 17846839 intron,5` UTR olf186-F +,olf186-M + chr2R 17846898 intron,5` UTR olf186-F +,olf186-M + chr2R_14_17845001 chr2R_17845001 RAL-85 445 chr2R 17991319 17991341 chr2R 17991404 17991427 11 85 3.0 7.5 5.2 1.8 108 chr2R 17991319 intron dpr13 - chr2R 17991373 intron dpr13 - chr2R 17991427 intron dpr13 - chr2R_11_17990001 chr2R_17990001 RAL-85 446 chr2R 18308290 18308307 chr2R 18308395 18308413 4 106 2.0 5.5 3.8 0.8 123 chr2R 18308290 intron sbb - chr2R 18308352 intron sbb - chr2R 18308413 intron sbb - chr2R_4_18305001 chr2R_18305001 RAL-85 447 chr2R 18486844 18486878 chr2R 18487106 18487140 15 261 3.5 3.0 3.2 3.6 296 chr2R 18486844 intron CG30116 - chr2R 18486992 intron CG30116 - chr2R 18487140 intron CG30116 - chr2R_15_18485001 chr2R_18485001 RAL-85 448 chr2R 18528195 18528212 chr2R 18528279 18528297 4 84 3.5 5.5 4.5 0.7 102 chr2R 18528195 intron CG10924 + chr2R 18528246 intron CG10924 + chr2R 18528297 intron CG10924 + chr2R_4_18525001 chr2R_18525001 RAL-85 449 chr2R 18548735 18548764 chr2R 18548831 18548860 6 96 1.5 3.0 2.2 1.9 125 chr2R 18548735 3` UTR Rgk2 + chr2R 18548798 3` UTR Rgk2 + chr2R 18548860 3` UTR Rgk2 + chr2R_6_18545001 chr2R_18545001 RAL-85 450 chr2R 18575796 18575825 chr2R 18581984 18582013 3S18 9 6187 3.0 2.5 2.8 2.4 6217 chr2R 18575796 intron GEFmeso - chr2R 18578904 intron GEFmeso - chr2R 18582013 intron GEFmeso - chr2R_9_18575001 chr2R_18575001 RAL-85 451 chr2R 18585803 18585819 chr2R 18585881 18585896 5 78 9.5 2.0 5.8 0.7 93 chr2R 18585803 intron GEFmeso - chr2R 18585850 intron GEFmeso - chr2R 18585896 intron GEFmeso - chr2R_5_18585001 chr2R_18585001 RAL-85 452 chr2R 18590865 18590901 chr2R 18600017 18600053 roo 8 9152 3.5 4.0 3.8 1.7 9188 chr2R 18590865 intron GEFmeso - chr2R 18595459 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_8_18595001 chr2R_18595001 RAL-85 453 chr2R 18604417 18604452 chr2R 18604503 18604538 20 86 2.0 1.5 1.8 7.1 121 chr2R 18604417 intron GEFmeso - chr2R 18604478 intron GEFmeso - chr2R 18604538 intron GEFmeso - chr2R_20_18600001 chr2R_18600001 RAL-85 454 chr2R 18692900 18692920 chr2R 18692987 18693007 9 86 4.0 3.0 3.5 2.0 107 chr2R 18692900 intron Sik3 + chr2R 18692954 intron Sik3 + chr2R 18693007 intron Sik3 + chr2R_9_18690001 chr2R_18690001 RAL-85 455 chr2R 18713240 18713269 chr2R 18713317 18713346 7 77 2.0 0.5 1.2 3.2 106 chr2R 18713240 intergenic not near genes chr2R 18713293 intergenic not near genes chr2R 18713346 intergenic not near genes chr2R_7_18710001 chr2R_18710001 RAL-85 456 chr2R 18714919 18714945 chr2R 18715368 18715394 12 449 2.0 1.0 1.5 4.8 475 chr2R 18714919 intergenic not near genes chr2R 18715156 intergenic not near genes chr2R 18715394 intergenic not near genes chr2R_12_18715001 chr2R_18715001 RAL-85 457 chr2R 18926507 18926525 chr2R 18926594 18926612 4 87 1.0 0.5 0.8 2.2 105 chr2R 18926507 intron sano + chr2R 18926560 intron sano + chr2R 18926612 intron sano + chr2R_4_18925001 chr2R_18925001 RAL-85 458 chr2R 18953161 18953181 chr2R 18953248 18953267 4 87 1.5 0.5 1.0 2.0 106 chr2R 18953161 intron sano + chr2R 18953214 intron sano + chr2R 18953267 intron sano + chr2R_4_18950001 chr2R_18950001 RAL-85 459 chr2R 19007106 19007133 chr2R 19007206 19007229 9 96 4.5 1.5 3.0 2.2 123 chr2R 19007106 intron tn + chr2R 19007168 intron tn + chr2R 19007229 intron tn + chr2R_9_19005001 chr2R_19005001 RAL-85 460 chr2R 19010763 19010770 chr2R 19010887 19010893 4 124 5.0 5.0 5.0 0.7 130 chr2R 19010763 intergenic not near genes chr2R 19010828 intergenic not near genes chr2R 19010893 intergenic not near genes chr2R_4_19010001 chr2R_19010001 RAL-85 461 chr2R 19012935 19012968 chr2R 19013029 19013062 15 93 3.0 1.5 2.2 4.7 127 chr2R 19012935 intergenic not near genes chr2R 19012998 intergenic not near genes chr2R 19013062 intergenic not near genes chr2R_15_19010001 chr2R_19010001 RAL-85 462 chr2R 19177872 19177899 chr2R 19177951 19177978 9 78 2.5 1.5 2.0 3.0 106 chr2R 19177872 3` UTR CG10737 + chr2R 19177925 3` UTR CG10737 + chr2R 19177978 3` UTR CG10737 + chr2R_9_19175001 chr2R_19175001 RAL-85 463 chr2R 19183346 19183374 chr2R 19183422 19183450 10 76 2.0 2.0 2.0 3.3 104 chr2R 19183346 intron hppy + chr2R 19183398 intron hppy + chr2R 19183450 intron hppy + chr2R_10_19180001 chr2R_19180001 RAL-85 464 chr2R 19321616 19321631 chr2R 19321693 19321708 4 77 0.0 1.0 0.5 2.7 92 chr2R 19321616 intron Rgk1 - chr2R 19321662 intron Rgk1 - chr2R 19321708 intron Rgk1 - chr2R_4_19320001 chr2R_19320001 RAL-85 465 chr2R 19331233 19331264 chr2R 19331313 19331344 14 80 4.5 5.0 4.8 2.4 111 chr2R 19331233 intron,intron Rgk1 -,CG34045 + chr2R 19331288 intron,intron Rgk1 -,CG34045 + chr2R 19331344 intron,intron Rgk1 -,CG34045 + chr2R_14_19330001 chr2R_19330001 RAL-85 466 chr2R 19373683 19373712 chr2R 19373864 19373889 11 180 5.5 3.5 4.5 2.0 206 chr2R 19373683 5` UTR CG9416 - chr2R 19373786 intergenic CG9416 - chr2R 19373889 intergenic CG9416 - chr2R_11_19370001 chr2R_19370001 RAL-85 467 chr2R 19533568 19533586 chr2R 19533636 19533662 8 74 2.5 7.0 4.8 1.4 94 chr2R 19533568 intron sm - chr2R 19533615 intron sm - chr2R 19533662 intron sm - chr2R_8_19530001 chr2R_19530001 RAL-85 468 chr2R 19535102 19535131 chr2R 19535318 19535348 4 216 3.0 4.0 3.5 0.9 246 chr2R 19535102 intron sm - chr2R 19535225 intron sm - chr2R 19535348 intron sm - chr2R_4_19535001 chr2R_19535001 RAL-85 469 chr2R 19776592 19776626 chr2R 19779915 19779949 jockey 6 3323 3.0 3.5 3.2 1.4 3357 chr2R 19776592 intergenic not near genes chr2R 19778270 intergenic not near genes chr2R 19779949 intergenic not near genes chr2R_6_19775001 chr2R_19775001 RAL-85 470 chr2R 19816084 19816110 chr2R 19816197 19816223 6 113 0.0 0.0 0.0 6.0 139 chr2R 19816084 3` UTR Obp56h + chr2R 19816154 3` UTR Obp56h + chr2R 19816223 intergenic Obp56h + chr2R_6_19815001 chr2R_19815001 RAL-85 471 chr2R 19897106 19897125 chr2R 19897180 19897211 10 83 4.5 3.5 4.0 2.0 105 chr2R 19897106 intergenic CR44572 - chr2R 19897158 intergenic CR44572 - chr2R 19897211 intergenic CR44572 - chr2R_10_19895001 chr2R_19895001 RAL-85 472 chr2R 19904202 19904232 chr2R 19904282 19904312 8 78 1.0 2.0 1.5 3.2 110 chr2R 19904202 intergenic not near genes chr2R 19904257 intergenic not near genes chr2R 19904312 intergenic not near genes chr2R_8_19900001 chr2R_19900001 RAL-85 473 chr2R 19914850 19914873 chr2R 19922262 19922285 mdg1 6 7412 2.5 4.0 3.2 1.4 7435 chr2R 19914850 intergenic not near genes chr2R 19918568 intergenic not near genes chr2R 19922285 intergenic not near genes chr2R_6_19915001 chr2R_19915001 RAL-85 474 chr2R 19957429 19957464 chr2R 19962631 19962665 copia 8 5202 4.0 2.5 3.2 1.9 5236 chr2R 19957429 intergenic CG44623 + chr2R 19960047 intergenic not near genes chr2R 19962665 intergenic not near genes chr2R_8_19960001 chr2R_19960001 RAL-85 475 chr2R 19967500 19967526 chr2R 19967678 19967705 7 176 0.0 6.0 3.0 1.8 205 chr2R 19967500 intergenic not near genes chr2R 19967602 intergenic not near genes chr2R 19967705 intergenic not near genes chr2R_7_19965001 chr2R_19965001 RAL-85 476 chr2R 20016031 20016055 chr2R 20016116 20016140 6 85 2.0 0.0 1.0 3.0 109 chr2R 20016031 intergenic CR44630 - chr2R 20016086 intergenic CR44630 - chr2R 20016140 intergenic CR44630 - chr2R_6_20015001 chr2R_20015001 RAL-85 477 chr2R 20382334 20382353 chr2R 20382419 20382438 8 85 2.0 2.0 2.0 2.7 104 chr2R 20382334 intergenic not near genes chr2R 20382386 intergenic not near genes chr2R 20382438 intergenic not near genes chr2R_8_20380001 chr2R_20380001 RAL-85 478 chr2R 20600419 20600453 chr2R 20600511 20600542 7 90 0.5 2.0 1.2 3.2 123 chr2R 20600419 intron bl + chr2R 20600480 intron bl + chr2R 20600542 intron bl + chr2R_7_20600001 chr2R_20600001 RAL-85 479 chr2R 20739444 20739477 chr2R 20744208 20744244 F-element 8 4767 3.0 6.5 4.8 1.4 4800 chr2R 20739444 intron dpr + chr2R 20741844 intron dpr + chr2R 20744244 intron dpr + chr2R_8_20740001 chr2R_20740001 RAL-85 480 chr2R 21043653 21043685 chr2R 21043738 21043792 6 100 3.0 0.0 1.5 2.4 139 chr2R 21043653 intergenic not near genes chr2R 21043722 intergenic not near genes chr2R 21043792 intergenic not near genes chr2R_6_21040001 chr2R_21040001 RAL-85 481 chr2R 21056684 21056719 chr2R 21056765 21056800 13 80 2.5 1.0 1.8 4.6 116 chr2R 21056684 5` UTR shg - chr2R 21056742 5` UTR shg - chr2R 21056800 5` UTR shg - chr2R_13_21055001 chr2R_21055001 RAL-85 482 chr2R 21059730 21059761 chr2R 21059876 21059907 5 146 1.0 3.5 2.2 1.6 177 chr2R 21059730 3` UTR cpa + chr2R 21059818 3` UTR,3` UTR cpa +,CG15653 - chr2R 21059907 exon CG15653 - chr2R_5_21055001 chr2R_21055001 RAL-85 483 chr2R 21079326 21079352 chr2R 21079402 21079428 13 76 3.0 2.5 2.8 3.4 102 chr2R 21079326 intron Treh + chr2R 21079377 intron Treh + chr2R 21079428 intron Treh + chr2R_13_21075001 chr2R_21075001 RAL-85 484 chr2R 21110789 21110820 chr2R 21110882 21110913 15 93 3.5 3.0 3.2 3.6 124 chr2R 21110789 intron ktub + chr2R 21110851 intron ktub + chr2R 21110913 intron ktub + chr2R_15_21110001 chr2R_21110001 RAL-85 485 chr2R 21151116 21151135 chr2R 21153749 21153768 opus 7 2633 4.5 2.0 3.2 1.7 2652 chr2R 21151116 intron CG30389 - chr2R 21152442 intron CG30389 - chr2R 21153768 intron CG30389 - chr2R_7_21150001 chr2R_21150001 RAL-85 486 chr2R 21642010 21642025 chr2R 21642087 21642100 5 78 4.0 2.5 3.2 1.2 90 chr2R 21642010 intergenic not near genes chr2R 21642055 intergenic not near genes chr2R 21642100 intergenic not near genes chr2R_5_21640001 chr2R_21640001 RAL-85 487 chr2R 21700154 21700185 chr2R 21700240 21700271 12 85 3.0 1.5 2.2 3.8 117 chr2R 21700154 intron HmgZ - chr2R 21700212 intron HmgZ - chr2R 21700271 intron HmgZ - chr2R_12_21700001 chr2R_21700001 RAL-85 488 chr2R 21738278 21738307 chr2R 21747437 21747448 roo 9 9157 3.0 3.0 3.0 2.2 9170 chr2R 21738278 intergenic not near genes chr2R 21742863 intergenic not near genes chr2R 21747448 intergenic not near genes chr2R_9_21740001 chr2R_21740001 RAL-85 489 chr2R 21906279 21906300 chr2R 21906380 21906401 6 101 2.5 2.5 2.5 1.7 122 chr2R 21906279 intron Fili + chr2R 21906340 intron Fili + chr2R 21906401 intron Fili + chr2R_6_21905001 chr2R_21905001 RAL-85 490 chr2R 21982264 21982283 chr2R 21982408 21982439 4 153 1.5 3.0 2.2 1.2 175 chr2R 21982264 intergenic not near genes chr2R 21982352 intergenic not near genes chr2R 21982439 intergenic not near genes chr2R_4_21980001 chr2R_21980001 RAL-85 491 chr2R 22001710 22001741 chr2R 22001916 22001946 8 205 2.0 2.5 2.2 2.5 236 chr2R 22001710 intron CG34370 - chr2R 22001828 intron CG34370 - chr2R 22001946 intron CG34370 - chr2R_8_22000001 chr2R_22000001 RAL-85 492 chr2R 22014208 22014233 chr2R 22014284 22014308 14 76 2.0 4.5 3.2 3.3 100 chr2R 22014208 intron CG34370 - chr2R 22014258 intron CG34370 - chr2R 22014308 intron CG34370 - chr2R_14_22010001 chr2R_22010001 RAL-85 493 chr2R 22072689 22072709 chr2R 22072774 22072794 9 85 3.0 5.0 4.0 1.8 105 chr2R 22072689 intron CG11474 - chr2R 22072742 intron CG11474 - chr2R 22072794 intron CG11474 - chr2R_9_22070001 chr2R_22070001 RAL-85 494 chr2R 22120538 22120567 chr2R 22120631 22120660 9 86 2.0 3.0 2.5 2.6 122 chr2R 22120538 intron Vrp1 - chr2R 22120599 intron Vrp1 - chr2R 22120660 intron Vrp1 - chr2R_9_22120001 chr2R_22120001 RAL-85 495 chr2R 22292072 22292107 chr2R 22292159 22292194 10 87 2.0 4.5 3.2 2.4 122 chr2R 22292072 5` UTR CR43422 + chr2R 22292133 5` UTR CR43422 + chr2R 22292194 5` UTR CR43422 + chr2R_10_22290001 chr2R_22290001 RAL-85 496 chr2R 22349694 22349721 chr2R 22351478 22351505 jockey 6 1784 2.0 1.5 1.8 2.1 1811 chr2R 22349694 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351505 intron Liprin-gamma - chr2R_6_22350001 chr2R_22350001 RAL-85 497 chr2R 22377805 22377817 chr2R 22377891 22377903 4 86 5.5 1.0 3.2 1.0 98 chr2R 22377805 3` UTR Rtf1 + chr2R 22377854 3` UTR Rtf1 + chr2R 22377903 3` UTR Rtf1 + chr2R_4_22375001 chr2R_22375001 RAL-85 498 chr2R 22460381 22460399 chr2R 22460460 22460478 6 79 1.0 3.0 2.0 2.0 97 chr2R 22460381 intron CG10384 + chr2R 22460430 intron CG10384 + chr2R 22460478 intron CG10384 + chr2R_6_22460001 chr2R_22460001 RAL-85 499 chr2R 22525754 22525784 chr2R 22529309 22529339 jockey 5 3554 1.0 2.0 1.5 2.0 3585 chr2R 22525754 intron px - chr2R 22527546 intron px - chr2R 22529339 intron px - chr2R_5_22525001 chr2R_22525001 RAL-85 500 chr2R 22574171 22574188 chr2R 22574251 22574268 5 80 2.0 4.0 3.0 1.2 97 chr2R 22574171 intron dnr1 - chr2R 22574220 intron dnr1 - chr2R 22574268 intron dnr1 - chr2R_5_22570001 chr2R_22570001 RAL-85 501 chr2R 22620832 22620858 chr2R 22620932 22620958 10 100 0.0 1.5 0.8 5.6 126 chr2R 22620832 5` UTR CG33143 + chr2R 22620895 5` UTR CG33143 + chr2R 22620958 5` UTR CG33143 + chr2R_10_22620001 chr2R_22620001 RAL-85 502 chr2R 22623808 22623821 chr2R 22623903 22623916 5 95 2.5 1.5 2.0 1.7 108 chr2R 22623808 intron CG33143 + chr2R 22623862 intron CG33143 + chr2R 22623916 intron CG33143 + chr2R_5_22620001 chr2R_22620001 RAL-85 503 chr2R 22773762 22773795 chr2R 22773845 22773878 12 83 2.0 2.0 2.0 4.0 116 chr2R 22773762 intron CG42260 - chr2R 22773820 intron CG42260 - chr2R 22773878 intron CG42260 - chr2R_12_22770001 chr2R_22770001 RAL-85 504 chr2R 22774965 22774999 chr2R 22775384 22775409 jockey 10 417 3.5 0.5 2.0 3.3 444 chr2R 22774965 intron CG42260 - chr2R 22775187 intron CG42260 - chr2R 22775409 intron CG42260 - chr2R_10_22775001 chr2R_22775001 RAL-85 505 chr2R 22909523 22909550 chr2R 22909761 22909787 16 238 3.0 5.0 4.0 3.2 264 chr2R 22909523 intron nahoda + chr2R 22909655 intron nahoda + chr2R 22909787 intron nahoda + chr2R_16_22905001 chr2R_22905001 RAL-85 506 chr2R 22988311 22988318 chr2R 22988392 22988399 4 79 4.5 2.5 3.5 0.9 88 chr2R 22988311 intron twi + chr2R 22988355 intron twi + chr2R 22988399 intron twi + chr2R_4_22985001 chr2R_22985001 RAL-85 507 chr2R 23061772 23061780 chr2R 23061866 23061874 5 94 2.0 2.5 2.2 1.6 102 chr2R 23061772 3` UTR l(2)06496 - chr2R 23061823 3` UTR l(2)06496 - chr2R 23061874 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-85 508 chr2R 23134838 23134851 chr2R 23134921 23134931 5 81 1.5 5.0 3.2 1.2 93 chr2R 23134838 intergenic not near genes chr2R 23134884 intergenic not near genes chr2R 23134931 intergenic not near genes chr2R_5_23130001 chr2R_23130001 RAL-85 509 chr2R 23315387 23315393 chr2R 23315559 23315565 4 172 0.0 2.5 1.2 1.8 178 chr2R 23315387 intergenic not near genes chr2R 23315476 intergenic not near genes chr2R 23315565 intergenic not near genes chr2R_4_23315001 chr2R_23315001 RAL-85 510 chr2R 23411062 23411070 chr2R 23411144 23411152 4 82 2.5 0.0 1.2 1.8 90 chr2R 23411062 intergenic not near genes chr2R 23411107 intergenic not near genes chr2R 23411152 intergenic not near genes chr2R_4_23410001 chr2R_23410001 RAL-85 511 chr2R 23429209 23429234 chr2R 23429434 23429459 8 224 2.5 1.5 2.0 2.7 250 chr2R 23429209 intron CG9815 - chr2R 23429334 intron CG9815 - chr2R 23429459 intron CG9815 - chr2R_8_23425001 chr2R_23425001 RAL-85 512 chr2R 23437230 23437244 chr2R 23437307 23437318 7 76 5.0 1.5 3.2 1.7 88 chr2R 23437230 intergenic not near genes chr2R 23437274 intergenic not near genes chr2R 23437318 intergenic not near genes chr2R_7_23435001 chr2R_23435001 RAL-85 513 chr2R 23529586 23529606 chr2R 23537162 23537182 412 5 7575 2.5 5.5 4.0 1.0 7596 chr2R 23529586 intron bw - chr2R 23533384 intron bw - chr2R 23537182 exon bw - chr2R_5_23530001 chr2R_23530001 RAL-85 514 chr2R 23607035 23607047 chr2R 23607116 23607128 5 81 4.0 1.0 2.5 1.4 93 chr2R 23607035 intron CG17664 - chr2R 23607082 intron CG17664 - chr2R 23607128 intron CG17664 - chr2R_5_23605001 chr2R_23605001 RAL-85 515 chr2R 23887539 23887565 chr2R 23887626 23887652 4 87 0.5 1.0 0.8 2.2 113 chr2R 23887539 intron CG5597 + chr2R 23887596 intron CG5597 + chr2R 23887652 intron CG5597 + chr2R_4_23885001 chr2R_23885001 RAL-85 516 chr2R 23914301 23914321 chr2R 23921923 23921945 412 9 7624 4.5 5.0 4.8 1.6 7644 chr2R 23914301 exon kcc + chr2R 23918123 intron kcc + chr2R 23921945 intron kcc + chr2R_9_23915001 chr2R_23915001 RAL-85 517 chr2R 23914323 23914331 chr2R 23921922 23921955 412 6 7615 3.5 4.5 4.0 1.2 7632 chr2R 23914323 exon kcc + chr2R 23918139 intron kcc + chr2R 23921955 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-85 518 chr2R 24031380 24031412 chr2R 24031464 24031496 6 84 1.5 0.5 1.0 3.0 116 chr2R 24031380 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031496 intergenic Chi -,CG30172 - chr2R_6_24030001 chr2R_24030001 RAL-85 519 chr2R 24147068 24147098 chr2R 24154646 24154676 412 10 7578 5.0 4.5 4.8 1.7 7608 chr2R 24147068 intron Dat + chr2R 24150872 intron Dat + chr2R 24154676 intron Dat + chr2R_10_24150001 chr2R_24150001 RAL-85 520 chr2R 24278319 24278359 chr2R 24278403 24278435 19 80 0.5 4.0 2.2 5.9 116 chr2R 24278319 intron nvy + chr2R 24278377 intron nvy + chr2R 24278435 intron nvy + chr2R_19_24275001 chr2R_24275001 RAL-85 521 chr2R 24303523 24303535 chr2R 24303601 24303601 4 72 6.0 4.5 5.2 0.6 78 chr2R 24303523 intergenic not near genes chr2R 24303562 intergenic not near genes chr2R 24303601 intergenic not near genes chr2R_4_24300001 chr2R_24300001 RAL-85 522 chr2R 24320178 24320203 chr2R 24320282 24320307 6 104 2.5 2.5 2.5 1.7 129 chr2R 24320178 intergenic not near genes chr2R 24320242 intergenic not near genes chr2R 24320307 intergenic not near genes chr2R_6_24320001 chr2R_24320001 RAL-85 523 chr2R 24430924 24430947 chr2R 24431012 24431035 4 88 0.0 2.5 1.2 1.8 111 chr2R 24430924 intergenic CG15873 -,Pgam5-2 - chr2R 24430980 intergenic CG15873 -,Pgam5-2 - chr2R 24431035 intergenic Pgam5-2 -,CG15873 - chr2R_4_24430001 chr2R_24430001 RAL-85 524 chr2R 24590097 24590146 chr2R 24590205 24590236 4 92 0.0 4.5 2.2 1.2 139 chr2R 24590097 intron pio + chr2R 24590166 intron pio + chr2R 24590236 intron pio + chr2R_4_24590001 chr2R_24590001 RAL-85 525 chr2R 24647589 24647615 chr2R 24655145 24655172 412 6 7557 3.0 4.5 3.8 1.2 7583 chr2R 24647589 intergenic not near genes chr2R 24651380 intergenic not near genes chr2R 24655172 intergenic not near genes chr2R_6_24650001 chr2R_24650001 RAL-85 526 chr2R 24727886 24727917 chr2R 24735394 24735425 mdg1 13 7505 3.0 4.0 3.5 2.9 7539 chr2R 24727886 intron Mid1 - chr2R 24731656 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_13_24730001 chr2R_24730001 RAL-85 527 chr2R 24737151 24737174 chr2R 24737269 24737294 11 119 4.0 5.0 4.5 2.0 143 chr2R 24737151 intergenic Mid1 - chr2R 24737222 intergenic not near genes chr2R 24737294 intergenic not near genes chr2R_11_24735001 chr2R_24735001 RAL-85 528 chr2R 24739647 24739676 chr2R 24739723 24739752 4 76 2.5 4.0 3.2 1.0 105 chr2R 24739647 intergenic CR44828 - chr2R 24739700 intergenic CR44828 - chr2R 24739752 intergenic CR44828 - chr2R_4_24735001 chr2R_24735001 RAL-85 529 chr2R 24763611 24763644 chr2R 24765585 24765620 G2 18 1975 4.5 4.5 4.5 3.3 2009 chr2R 24763611 exon CG3894 + chr2R 24764616 intron CG3894 + chr2R 24765620 exon CG3894 + chr2R_18_24760001 chr2R_24760001 RAL-85 530 chr2R 24800322 24800360 chr2R 24800406 24800444 10 78 6.0 3.5 4.8 1.7 122 chr2R 24800322 3` UTR CG3611 + chr2R 24800383 3` UTR CG3611 + chr2R 24800444 3` UTR CG3611 + chr2R_10_24800001 chr2R_24800001 RAL-85 531 chr2R 25078986 25079015 chr2R 25079114 25079142 4 128 1.5 1.0 1.2 1.8 156 chr2R 25078986 intron gol - chr2R 25079064 intron gol - chr2R 25079142 intron gol - chr2R_4_25075001 chr2R_25075001 RAL-85 532 chr2R 25135275 25135297 chr2R 25135360 25135382 8 85 2.5 2.0 2.2 2.5 107 chr2R 25135275 intron lov - chr2R 25135328 intron lov - chr2R 25135382 intron lov - chr2R_8_25135001 chr2R_25135001 RAL-85 533 chr3L 27164 27195 chr3L 27323 27354 5 159 2.0 0.0 1.0 2.5 190 chr3L 27164 intergenic not near genes chr3L 27259 intergenic not near genes chr3L 27354 intergenic not near genes chr3L_5_25001 chr3L_25001 RAL-85 534 chr3L 51383 51414 chr3L 51481 51512 6 98 2.5 1.0 1.8 2.1 129 chr3L 51383 intergenic not near genes chr3L 51448 intergenic not near genes chr3L 51512 intergenic not near genes chr3L_6_50001 chr3L_50001 RAL-85 535 chr3L 110213 110243 chr3L 119380 119410 roo 6 9167 1.5 1.0 1.2 2.7 9197 chr3L 110213 intergenic not near genes chr3L 114812 intergenic not near genes chr3L 119410 intergenic not near genes chr3L_6_110001 chr3L_110001 RAL-85 536 chr3L 155784 155812 chr3L 155861 155889 5 77 0.5 0.0 0.2 4.2 105 chr3L 155784 intron p130CAS + chr3L 155836 intron p130CAS + chr3L 155889 intron p130CAS + chr3L_5_155001 chr3L_155001 RAL-85 537 chr3L 402689 402707 chr3L 409742 409760 297 9 7053 9.5 3.5 6.5 1.2 7071 chr3L 402689 intergenic not near genes chr3L 406224 intergenic not near genes chr3L 409760 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-85 538 chr3L 470925 470951 chr3L 471152 471178 12 227 2.5 7.0 4.8 2.1 253 chr3L 470925 intron klar - chr3L 471052 intron klar - chr3L 471178 intron klar - chr3L_12_470001 chr3L_470001 RAL-85 539 chr3L 705896 705931 chr3L 705992 706027 5 96 0.5 0.0 0.2 4.2 131 chr3L 705896 intergenic CG13895 -,CR44514 + chr3L 705962 3` UTR CG13895 - chr3L 706027 3` UTR CG13895 - chr3L_5_705001 chr3L_705001 RAL-85 540 chr3L 789925 789947 chr3L 790410 790432 roo 4 485 0.5 4.0 2.2 1.2 507 chr3L 789925 intergenic not near genes chr3L 790178 intergenic not near genes chr3L 790432 intergenic not near genes chr3L_4_790001 chr3L_790001 RAL-85 541 chr3L 858005 858031 chr3L 866485 866512 Tirant 5 8477 4.5 2.5 3.5 1.1 8507 chr3L 858005 intergenic not near genes chr3L 862258 intergenic not near genes chr3L 866512 5` UTR CG12502 + chr3L_5_860001 chr3L_860001 RAL-85 542 chr3L 875660 875693 chr3L 875746 875780 11 84 2.5 4.0 3.2 2.6 120 chr3L 875660 intron CG32479 + chr3L 875720 intron CG32479 + chr3L 875780 intron CG32479 + chr3L_11_875001 chr3L_875001 RAL-85 543 chr3L 939783 939800 chr3L 940904 940921 jockey 5 1121 3.5 4.0 3.8 1.0 1138 chr3L 939783 intron Glut1 + chr3L 940352 intron Glut1 + chr3L 940921 intron Glut1 + chr3L_5_940001 chr3L_940001 RAL-85 544 chr3L 1015026 1015054 chr3L 1015138 1015166 9 112 4.0 6.0 5.0 1.5 140 chr3L 1015026 intron trio - chr3L 1015096 intron trio - chr3L 1015166 intron trio - chr3L_9_1015001 chr3L_1015001 RAL-85 545 chr3L 1031575 1031610 chr3L 1031651 1031674 10 71 3.0 3.0 3.0 2.5 99 chr3L 1031575 intron trio - chr3L 1031624 intron trio - chr3L 1031674 intron trio - chr3L_10_1030001 chr3L_1030001 RAL-85 546 chr3L 1040556 1040577 chr3L 1040640 1040661 4 84 1.5 2.5 2.0 1.3 105 chr3L 1040556 intron bab1 - chr3L 1040608 intron bab1 - chr3L 1040661 intron bab1 - chr3L_4_1040001 chr3L_1040001 RAL-85 547 chr3L 1047354 1047380 chr3L 1055164 1055192 412 5 7812 0.5 3.5 2.0 1.7 7838 chr3L 1047354 intron bab1 - chr3L 1051273 intron bab1 - chr3L 1055192 intron bab1 - chr3L_5_1050001 chr3L_1050001 RAL-85 548 chr3L 1095032 1095051 chr3L 1095113 1095124 6 80 1.0 1.5 1.2 2.7 92 chr3L 1095032 intron bab1 - chr3L 1095078 intron bab1 - chr3L 1095124 intron bab1 - chr3L_6_1095001 chr3L_1095001 RAL-85 549 chr3L 1145243 1145264 chr3L 1145322 1145343 4 79 1.0 1.0 1.0 2.0 100 chr3L 1145243 intron bab2 - chr3L 1145293 intron bab2 - chr3L 1145343 intron bab2 - chr3L_4_1145001 chr3L_1145001 RAL-85 550 chr3L 1154132 1154160 chr3L 1163282 1163308 roo 4 9150 0.5 0.5 0.5 2.7 9176 chr3L 1154132 intron bab2 - chr3L 1158720 intron bab2 - chr3L 1163308 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-85 551 chr3L 1219594 1219622 chr3L 1227327 1227327 412 8 7729 5.5 3.0 4.2 1.5 7733 chr3L 1219594 intron mwh + chr3L 1223460 intron mwh + chr3L 1227327 intron mwh + chr3L_8_1220001 chr3L_1220001 RAL-85 552 chr3L 1415775 1415808 chr3L 1415855 1415887 11 81 1.5 4.5 3.0 2.8 112 chr3L 1415775 intron Ptp61F - chr3L 1415831 intron Ptp61F - chr3L 1415887 intron Ptp61F - chr3L_11_1415001 chr3L_1415001 RAL-85 553 chr3L 1506006 1506030 chr3L 1513603 1513627 17.6 5 7596 3.0 4.0 3.5 1.1 7621 chr3L 1506006 intron,intron Psa +,cue - chr3L 1509816 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_5_1505001 chr3L_1505001 RAL-85 554 chr3L 1571244 1571483 chr3L 1571325 1571568 5 83 1.5 3.0 2.2 1.6 324 chr3L 1571244 intron CG12004 + chr3L 1571406 intron CG12004 + chr3L 1571568 intron CG12004 + chr3L_5_1570001 chr3L_1570001 RAL-85 555 chr3L 1661565 1661593 chr3L 1661648 1661676 11 83 4.5 2.0 3.2 2.6 111 chr3L 1661565 exon CG7971 - chr3L 1661620 intron CG7971 - chr3L 1661676 intron CG7971 - chr3L_11_1660001 chr3L_1660001 RAL-85 556 chr3L 1684026 1684035 chr3L 1684103 1684113 4 77 0.5 2.0 1.2 1.8 87 chr3L 1684026 intron CG7991 + chr3L 1684070 intron CG7991 + chr3L 1684113 intron CG7991 + chr3L_4_1680001 chr3L_1680001 RAL-85 557 chr3L 1754689 1754720 chr3L 1754808 1754839 8 119 2.5 1.5 2.0 2.7 150 chr3L 1754689 intron Cht2 - chr3L 1754764 intron Cht2 - chr3L 1754839 intron Cht2 - chr3L_8_1750001 chr3L_1750001 RAL-85 558 chr3L 1924963 1924972 chr3L 1925101 1925110 6 138 6.5 2.5 4.5 1.1 147 chr3L 1924963 exon Dbx + chr3L 1925036 intron Dbx + chr3L 1925110 intron Dbx + chr3L_6_1925001 chr3L_1925001 RAL-85 559 chr3L 2139206 2139228 chr3L 2139287 2139309 7 81 3.5 2.0 2.8 1.8 103 chr3L 2139206 intron zormin - chr3L 2139258 intron zormin - chr3L 2139309 intron zormin - chr3L_7_2135001 chr3L_2135001 RAL-85 560 chr3L 2168773 2168807 chr3L 2168864 2168872 6 87 3.0 2.0 2.5 1.7 99 chr3L 2168773 exon CG15879 - chr3L 2168822 intron CG15879 - chr3L 2168872 intron CG15879 - chr3L_6_2165001 chr3L_2165001 RAL-85 561 chr3L 2308009 2308025 chr3L 2308113 2308131 5 106 2.0 2.0 2.0 1.7 122 chr3L 2308009 intergenic not near genes chr3L 2308070 intergenic not near genes chr3L 2308131 intergenic not near genes chr3L_5_2305001 chr3L_2305001 RAL-85 562 chr3L 2321171 2321193 chr3L 2321248 2321270 7 77 3.0 4.5 3.8 1.5 99 chr3L 2321171 intergenic not near genes chr3L 2321220 intergenic not near genes chr3L 2321270 intergenic not near genes chr3L_7_2320001 chr3L_2320001 RAL-85 563 chr3L 2331581 2331605 chr3L 2331658 2331682 8 77 3.0 0.5 1.8 2.9 101 chr3L 2331581 intron MsR1 + chr3L 2331632 intron MsR1 + chr3L 2331682 intron MsR1 + chr3L_8_2330001 chr3L_2330001 RAL-85 564 chr3L 2360722 2360736 chr3L 2360911 2360940 7 201 2.5 3.5 3.0 1.8 218 chr3L 2360722 exon CG13801 + chr3L 2360831 exon CG13801 + chr3L 2360940 exon CG13801 + chr3L_7_2360001 chr3L_2360001 RAL-85 565 chr3L 2411336 2411343 chr3L 2411416 2411423 6 80 0.5 2.0 1.2 2.7 87 chr3L 2411336 intron CG45186 + chr3L 2411380 intron CG45186 + chr3L 2411423 intron CG45186 + chr3L_6_2410001 chr3L_2410001 RAL-85 566 chr3L 2447505 2447526 chr3L 2456661 2456678 roo 7 9155 6.5 5.5 6.0 1.0 9173 chr3L 2447505 intron CG45186 + chr3L 2452092 intron CG45186 + chr3L 2456678 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-85 567 chr3L 2483616 2483627 chr3L 2483875 2483885 4 259 2.0 0.5 1.2 1.8 269 chr3L 2483616 intron CG45186 + chr3L 2483750 intron CG45186 + chr3L 2483885 intron CG45186 + chr3L_4_2480001 chr3L_2480001 RAL-85 568 chr3L 2561534 2561544 chr3L 2561611 2561620 4 77 1.0 1.0 1.0 2.0 86 chr3L 2561534 intron msn - chr3L 2561577 intron msn - chr3L 2561620 intron msn - chr3L_4_2560001 chr3L_2560001 RAL-85 569 chr3L 2731516 2731545 chr3L 2731598 2731626 8 82 4.0 1.0 2.5 2.3 110 chr3L 2731516 intron Mrtf - chr3L 2731571 intron Mrtf - chr3L 2731626 intron Mrtf - chr3L_8_2730001 chr3L_2730001 RAL-85 570 chr3L 2854480 2854496 chr3L 2854558 2854574 11 77 2.0 4.5 3.2 2.6 94 chr3L 2854480 intron CG43444 - chr3L 2854527 intron CG43444 - chr3L 2854574 intron CG43444 - chr3L_11_2850001 chr3L_2850001 RAL-85 571 chr3L 3050899 3050925 chr3L 3050986 3051012 9 87 0.5 1.5 1.0 4.5 113 chr3L 3050899 intron CG32485 + chr3L 3050956 intron CG32485 + chr3L 3051012 exon CG32485 + chr3L_9_3050001 chr3L_3050001 RAL-85 572 chr3L 3061297 3061311 chr3L 3069880 3069894 Tirant 4 8582 3.0 4.5 3.8 0.8 8597 chr3L 3061297 intron CG32486 - chr3L 3065596 intron CG32486 - chr3L 3069894 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-85 573 chr3L 3281443 3281474 chr3L 3281933 3281970 Doc 14 495 6.0 5.5 5.8 2.1 527 chr3L 3281443 intron CG12017 + chr3L 3281706 intron CG12017 + chr3L 3281970 intron CG12017 + chr3L_14_3280001 chr3L_3280001 RAL-85 574 chr3L 3475084 3475109 chr3L 3475528 3475549 jockey 10 444 3.5 7.5 5.5 1.5 465 chr3L 3475084 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475549 intron CG42324 + chr3L_10_3475001 chr3L_3475001 RAL-85 575 chr3L 3495811 3495843 chr3L 3495901 3495934 9 91 2.5 2.0 2.2 2.8 123 chr3L 3495811 intron CG42324 + chr3L 3495872 intron CG42324 + chr3L 3495934 intron CG42324 + chr3L_9_3495001 chr3L_3495001 RAL-85 576 chr3L 3585599 3585626 chr3L 3585691 3585718 8 92 0.0 3.0 1.5 3.2 119 chr3L 3585599 intron Eip63E + chr3L 3585658 intron Eip63E + chr3L 3585718 intron Eip63E + chr3L_8_3585001 chr3L_3585001 RAL-85 577 chr3L 3601298 3601327 chr3L 3606609 3606638 copia 4 5311 3.5 1.0 2.2 1.2 5340 chr3L 3601298 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606638 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-85 578 chr3L 3763756 3763762 chr3L 3763837 3763843 4 81 7.0 0.0 3.5 0.9 87 chr3L 3763756 intron CG32264 - chr3L 3763800 intron CG32264 - chr3L 3763843 intron CG32264 - chr3L_4_3760001 chr3L_3760001 RAL-85 579 chr3L 3792924 3792947 chr3L 3793000 3793023 6 76 1.0 2.5 1.8 2.1 99 chr3L 3792924 intron CG32264 - chr3L 3792974 intron CG32264 - chr3L 3793023 intron CG32264 - chr3L_6_3790001 chr3L_3790001 RAL-85 580 chr3L 3815051 3815077 chr3L 3815132 3815158 7 81 1.5 1.0 1.2 3.2 107 chr3L 3815051 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815104 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815158 intron,intron Scsalpha +,CR43932 - chr3L_7_3815001 chr3L_3815001 RAL-85 581 chr3L 3914184 3914206 chr3L 3914269 3914291 6 85 3.5 4.0 3.8 1.2 107 chr3L 3914184 intron Eip63F-1 - chr3L 3914238 intron Eip63F-1 - chr3L 3914291 intron Eip63F-1 - chr3L_6_3910001 chr3L_3910001 RAL-85 582 chr3L 3921398 3921408 chr3L 3921662 3921672 5 264 3.0 4.5 3.8 1.0 274 chr3L 3921398 intron Eip63F-1 - chr3L 3921535 intron Eip63F-1 - chr3L 3921672 intron Eip63F-1 - chr3L_5_3920001 chr3L_3920001 RAL-85 583 chr3L 3922801 3922820 chr3L 3922895 3922914 6 94 2.0 0.0 1.0 3.0 113 chr3L 3922801 intron Eip63F-1 - chr3L 3922858 intron Eip63F-1 - chr3L 3922914 intron Eip63F-1 - chr3L_6_3920001 chr3L_3920001 RAL-85 584 chr3L 4015738 4015767 chr3L 4015821 4015850 5 83 1.0 1.0 1.0 2.5 112 chr3L 4015738 intergenic not near genes chr3L 4015794 intergenic not near genes chr3L 4015850 intergenic not near genes chr3L_5_4015001 chr3L_4015001 RAL-85 585 chr3L 4195144 4195173 chr3L 4195241 4195248 9 99 1.0 4.0 2.5 2.6 104 chr3L 4195144 exon CG43367 + chr3L 4195196 intron CG43367 + chr3L 4195248 intron CG43367 + chr3L_9_4195001 chr3L_4195001 RAL-85 586 chr3L 4519429 4519447 chr3L 4519505 4519524 5 77 3.0 0.0 1.5 2.0 95 chr3L 4519429 intron Tie - chr3L 4519476 intron Tie - chr3L 4519524 intron Tie - chr3L_5_4515001 chr3L_4515001 RAL-85 587 chr3L 4580306 4580329 chr3L 4580391 4580415 4 86 3.0 1.5 2.2 1.2 109 chr3L 4580306 intron CG42540 + chr3L 4580360 intron CG42540 + chr3L 4580415 intron CG42540 + chr3L_4_4580001 chr3L_4580001 RAL-85 588 chr3L 4668400 4668404 chr3L 4668774 4668778 4 374 0.5 0.5 0.5 2.7 378 chr3L 4668400 intron axo - chr3L 4668589 intron axo - chr3L 4668778 intron axo - chr3L_4_4665001 chr3L_4665001 RAL-85 589 chr3L 4748703 4748730 chr3L 4748794 4748821 8 90 4.0 2.5 3.2 1.9 118 chr3L 4748703 intron RhoGEF64C + chr3L 4748762 intron RhoGEF64C + chr3L 4748821 intron RhoGEF64C + chr3L_8_4745001 chr3L_4745001 RAL-85 590 chr3L 4896180 4896210 chr3L 4896262 4896292 13 80 2.5 3.0 2.8 3.4 112 chr3L 4896180 intergenic CG17150 + chr3L 4896236 intergenic CG17150 + chr3L 4896292 intergenic not near genes chr3L_13_4895001 chr3L_4895001 RAL-85 591 chr3L 4901128 4901157 chr3L 4907318 4907347 diver 5 6190 1.0 1.5 1.2 2.3 6219 chr3L 4901128 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907347 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-85 592 chr3L 5034163 5034172 chr3L 5043315 5043318 roo 5 9151 2.0 0.5 1.2 2.3 9155 chr3L 5034163 intron Con - chr3L 5038740 intron Con - chr3L 5043318 intron Con - chr3L_5_5035001 chr3L_5035001 RAL-85 593 chr3L 5212240 5212251 chr3L 5212323 5212330 4 82 8.5 4.0 6.2 0.6 90 chr3L 5212240 intron shep - chr3L 5212285 intron shep - chr3L 5212330 intron shep - chr3L_4_5210001 chr3L_5210001 RAL-85 594 chr3L 5212252 5212265 chr3L 5212322 5212348 7 78 4.5 4.0 4.2 1.3 96 chr3L 5212252 intron shep - chr3L 5212300 intron shep - chr3L 5212348 intron shep - chr3L_7_5210001 chr3L_5210001 RAL-85 595 chr3L 5245375 5245402 chr3L 5245457 5245484 8 82 3.0 5.5 4.2 1.5 109 chr3L 5245375 intron shep - chr3L 5245430 intron shep - chr3L 5245484 intron shep - chr3L_8_5245001 chr3L_5245001 RAL-85 596 chr3L 5387666 5387697 chr3L 5387922 5387954 8 255 0.5 4.5 2.5 2.3 288 chr3L 5387666 intergenic not near genes chr3L 5387810 intergenic not near genes chr3L 5387954 intergenic not near genes chr3L_8_5385001 chr3L_5385001 RAL-85 597 chr3L 5482941 5483096 chr3L 5483150 5483180 14 138 2.0 0.5 1.2 6.4 239 chr3L 5482941 exon CG4835 + chr3L 5483060 exon CG4835 + chr3L 5483180 exon CG4835 + chr3L_14_5480001 chr3L_5480001 RAL-85 598 chr3L 5498415 5498432 chr3L 5498492 5498509 4 77 0.5 3.5 2.0 1.3 94 chr3L 5498415 exon blanks - chr3L 5498462 exon blanks - chr3L 5498509 exon blanks - chr3L_4_5495001 chr3L_5495001 RAL-85 599 chr3L 5910032 5910059 chr3L 5910273 5910300 pogo 5 241 0.0 2.5 1.2 2.3 268 chr3L 5910032 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910300 intron CG13288 + chr3L_5_5910001 chr3L_5910001 RAL-85 600 chr3L 5926316 5926351 chr3L 5926506 5926510 13 183 2.5 5.0 3.8 2.7 194 chr3L 5926316 intron Vap-33B + chr3L 5926413 intron Vap-33B + chr3L 5926510 intron Vap-33B + chr3L_13_5925001 chr3L_5925001 RAL-85 601 chr3L 5988953 5988983 chr3L 5989042 5989072 7 89 3.5 3.5 3.5 1.6 119 chr3L 5988953 intergenic not near genes chr3L 5989012 intergenic not near genes chr3L 5989072 intergenic not near genes chr3L_7_5985001 chr3L_5985001 RAL-85 602 chr3L 5992594 5992621 chr3L 5992696 5992723 7 102 3.5 0.0 1.8 2.5 129 chr3L 5992594 intergenic not near genes chr3L 5992658 intergenic not near genes chr3L 5992723 intergenic not near genes chr3L_7_5990001 chr3L_5990001 RAL-85 603 chr3L 5992712 5992727 chr3L 5993100 5993115 9 388 0.0 7.5 3.8 1.9 403 chr3L 5992712 intergenic not near genes chr3L 5992914 intergenic not near genes chr3L 5993115 intergenic not near genes chr3L_9_5990001 chr3L_5990001 RAL-85 604 chr3L 6052652 6052667 chr3L 6052737 6052752 6 85 8.0 8.5 8.2 0.7 100 chr3L 6052652 exon Jon65Aii + chr3L 6052702 intron Jon65Aii + chr3L 6052752 exon Jon65Aii + chr3L_6_6050001 chr3L_6050001 RAL-85 605 chr3L 6124339 6124524 chr3L 6124499 6124628 5 110 4.5 13.5 9.0 0.5 289 chr3L 6124339 exon l(3)mbn - chr3L 6124484 exon l(3)mbn - chr3L 6124628 exon l(3)mbn - chr3L_5_6120001 chr3L_6120001 RAL-85 606 chr3L 6159869 6159892 chr3L 6159959 6159982 5 90 4.0 1.0 2.5 1.4 113 chr3L 6159869 intergenic not near genes chr3L 6159926 intergenic not near genes chr3L 6159982 intergenic not near genes chr3L_5_6155001 chr3L_6155001 RAL-85 607 chr3L 6220916 6220948 chr3L 6230068 6230100 roo 8 9152 1.0 1.0 1.0 4.0 9184 chr3L 6220916 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_8_6225001 chr3L_6225001 RAL-85 608 chr3L 6623482 6623507 chr3L 6623577 6623603 9 96 1.0 3.5 2.2 2.8 121 chr3L 6623482 intergenic not near genes chr3L 6623542 intergenic GluRIA + chr3L 6623603 intergenic GluRIA + chr3L_9_6620001 chr3L_6620001 RAL-85 609 chr3L 6760938 6760948 chr3L 6761009 6761025 7 73 3.5 4.0 3.8 1.5 87 chr3L 6760938 intron CG32392 - chr3L 6760982 intron CG32392 - chr3L 6761025 intron CG32392 - chr3L_7_6760001 chr3L_6760001 RAL-85 610 chr3L 6760949 6760962 chr3L 6761007 6761033 5 70 2.0 3.5 2.8 1.3 84 chr3L 6760949 intron CG32392 - chr3L 6760991 intron CG32392 - chr3L 6761033 intron CG32392 - chr3L_5_6760001 chr3L_6760001 RAL-85 611 chr3L 6855920 6855948 chr3L 6860703 6860726 Doc 5 4782 3.5 3.0 3.2 1.2 4806 chr3L 6855920 intergenic not near genes chr3L 6858323 intergenic not near genes chr3L 6860726 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-85 612 chr3L 6974502 6974521 chr3L 6974603 6974622 6 101 0.0 6.0 3.0 1.5 120 chr3L 6974502 intron Galphai - chr3L 6974562 intron Galphai - chr3L 6974622 intron Galphai - chr3L_6_6970001 chr3L_6970001 RAL-85 613 chr3L 7033173 7033202 chr3L 7033251 7033282 20 78 5.0 4.0 4.5 3.6 109 chr3L 7033173 intron Mp + chr3L 7033228 intron Mp + chr3L 7033282 intron Mp + chr3L_20_7030001 chr3L_7030001 RAL-85 614 chr3L 7150875 7150884 chr3L 7150951 7150960 4 76 3.5 1.5 2.5 1.1 85 chr3L 7150875 intron corn - chr3L 7150918 intron corn - chr3L 7150960 intron corn - chr3L_4_7150001 chr3L_7150001 RAL-85 615 chr3L 7175037 7175060 chr3L 7175267 7175290 9 230 3.5 1.0 2.2 2.8 253 chr3L 7175037 intron Dscam2 - chr3L 7175164 intron Dscam2 - chr3L 7175290 intron Dscam2 - chr3L_9_7175001 chr3L_7175001 RAL-85 616 chr3L 7355716 7355746 chr3L 7363624 7363654 10 7908 28.5 30.0 29.2 0.3 7938 chr3L 7355716 exon CTCF - chr3L 7359685 exon pst - chr3L 7363654 exon Sec63 + chr3L_10_7355001 chr3L_7355001 RAL-85 617 chr3L 7377321 7377349 chr3L 7380426 7380454 297 5 3105 0.0 2.5 1.2 2.3 3133 chr3L 7377321 intron SMSr - chr3L 7378888 intron SMSr - chr3L 7380454 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-85 618 chr3L 7393129 7393162 chr3L 7393300 7393336 4 173 1.0 0.0 0.5 2.7 207 chr3L 7393129 intron CG8563 + chr3L 7393232 intron CG8563 + chr3L 7393336 intron CG8563 + chr3L_4_7390001 chr3L_7390001 RAL-85 619 chr3L 7491653 7491687 chr3L 7491775 7491808 8 118 1.5 0.5 1.0 4.0 155 chr3L 7491653 intergenic Cyp316a1 + chr3L 7491730 intergenic Cyp316a1 + chr3L 7491808 intergenic Cyp316a1 + chr3L_8_7490001 chr3L_7490001 RAL-85 620 chr3L 7576212 7576226 chr3L 7576300 7576314 6 88 3.5 2.5 3.0 1.5 102 chr3L 7576212 intergenic not near genes chr3L 7576263 intergenic not near genes chr3L 7576314 intergenic not near genes chr3L_6_7575001 chr3L_7575001 RAL-85 621 chr3L 7711826 7711855 chr3L 7711902 7711931 7 72 1.5 2.0 1.8 2.5 105 chr3L 7711826 intron,intron CG32373 +,Ank2 - chr3L 7711878 intron,intron CG32373 +,Ank2 - chr3L 7711931 intron,intron CG32373 +,Ank2 - chr3L_7_7710001 chr3L_7710001 RAL-85 622 chr3L 7749470 7749471 chr3L 11777678 11777678 6 4028208 4.5 6.5 5.5 0.9 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_9760001 chr3L_9760001 RAL-85 623 chr3L 7793711 7793741 chr3L 7800763 7800793 297 4 7052 0.5 1.0 0.8 2.2 7082 chr3L 7793711 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800793 intron CG32369 - chr3L_4_7795001 chr3L_7795001 RAL-85 624 chr3L 7886514 7886540 chr3L 7889031 7889058 Stalker4 8 2517 1.0 2.5 1.8 2.9 2544 chr3L 7886514 intron CG32365 + chr3L 7887786 intron CG32365 + chr3L 7889058 intron CG32365 + chr3L_8_7885001 chr3L_7885001 RAL-85 625 chr3L 8157492 8157510 chr3L 8157637 8157655 5 145 1.0 0.5 0.8 2.8 163 chr3L 8157492 intron CG42445 - chr3L 8157574 intron CG42445 - chr3L 8157655 intron CG42445 - chr3L_5_8155001 chr3L_8155001 RAL-85 626 chr3L 8226978 8226996 chr3L 8227212 8227231 7 231 2.5 3.5 3.0 1.8 253 chr3L 8226978 intergenic not near genes chr3L 8227104 intergenic not near genes chr3L 8227231 intergenic not near genes chr3L_7_8225001 chr3L_8225001 RAL-85 627 chr3L 8295789 8295825 chr3L 8295947 8295983 5 158 3.0 3.0 3.0 1.2 194 chr3L 8295789 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295983 intergenic not near genes chr3L_5_8295001 chr3L_8295001 RAL-85 628 chr3L 8481793 8481806 chr3L 8490937 8490965 roo 10 9155 2.0 2.5 2.2 3.1 9172 chr3L 8481793 intron CG43163 - chr3L 8486379 intron CG43163 - chr3L 8490965 intron CG43163 - chr3L_10_8485001 chr3L_8485001 RAL-85 629 chr3L 8791281 8791297 chr3L 8796701 8796717 I-element 7 5420 5.0 3.0 4.0 1.4 5436 chr3L 8791281 exon Fhos + chr3L 8793999 intron Fhos + chr3L 8796717 intron Fhos + chr3L_7_8790001 chr3L_8790001 RAL-85 630 chr3L 8799945 8799972 chr3L 8800021 8800035 15 74 5.0 3.5 4.2 2.9 90 chr3L 8799945 exon CG13310 - chr3L 8799990 exon CG13310 - chr3L 8800035 intron CG13310 - chr3L_15_8795001 chr3L_8795001 RAL-85 631 chr3L 8826780 8826802 chr3L 8826898 8826920 4 118 3.5 0.5 2.0 1.3 140 chr3L 8826780 intergenic not near genes chr3L 8826850 intergenic not near genes chr3L 8826920 intergenic not near genes chr3L_4_8825001 chr3L_8825001 RAL-85 632 chr3L 9003955 9003977 chr3L 9004039 9004062 6 85 2.0 1.5 1.8 2.1 107 chr3L 9003955 intergenic not near genes chr3L 9004008 intergenic not near genes chr3L 9004062 intergenic not near genes chr3L_6_9000001 chr3L_9000001 RAL-85 633 chr3L 9024511 9024530 chr3L 9024590 9024610 5 80 0.0 1.5 0.8 2.8 99 chr3L 9024511 intergenic not near genes chr3L 9024560 intergenic not near genes chr3L 9024610 intergenic not near genes chr3L_5_9020001 chr3L_9020001 RAL-85 634 chr3L 9076927 9076959 chr3L 9084487 9084519 412 14 7558 5.5 3.0 4.2 2.7 7592 chr3L 9076927 exon Tequila + chr3L 9080723 intron Tequila + chr3L 9084519 exon Tequila + chr3L_14_9080001 chr3L_9080001 RAL-85 635 chr3L 9117494 9117525 chr3L 9117574 9117605 10 80 3.0 4.0 3.5 2.2 111 chr3L 9117494 intron bol - chr3L 9117550 intron bol - chr3L 9117605 intron bol - chr3L_10_9115001 chr3L_9115001 RAL-85 636 chr3L 9130556 9130581 chr3L 9134317 9134342 412 13 3760 3.0 4.0 3.5 2.9 3786 chr3L 9130556 intergenic bol - chr3L 9132449 intergenic not near genes chr3L 9134342 intergenic Dhpr + chr3L_13_9130001 chr3L_9130001 RAL-85 637 chr3L 9217718 9217725 chr3L 9218242 9218253 4 526 2.5 5.0 3.8 0.8 535 chr3L 9217718 intergenic not near genes chr3L 9217986 intergenic not near genes chr3L 9218253 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-85 638 chr3L 9219247 9219281 chr3L 9219916 9219916 jockey 12 668 5.0 7.0 6.0 1.7 669 chr3L 9219247 intergenic not near genes chr3L 9219582 intergenic not near genes chr3L 9219916 intergenic not near genes chr3L_12_9215001 chr3L_9215001 RAL-85 639 chr3L 9421522 9421546 chr3L 9421612 9421636 14 90 8.0 6.5 7.2 1.7 114 chr3L 9421522 intron CG3967 - chr3L 9421579 intron CG3967 - chr3L 9421636 intron CG3967 - chr3L_14_9420001 chr3L_9420001 RAL-85 640 chr3L 9575919 9575937 chr3L 9580987 9581015 jockey 7 5076 4.5 2.0 3.2 1.7 5096 chr3L 9575919 intron CG42673 + chr3L 9578467 intron CG42673 + chr3L 9581015 intron CG42673 + chr3L_7_9575001 chr3L_9575001 RAL-85 641 chr3L 9637852 9637886 chr3L 9637934 9637968 7 82 2.0 0.0 1.0 3.5 116 chr3L 9637852 intron fry - chr3L 9637910 intron fry - chr3L 9637968 intron fry - chr3L_7_9635001 chr3L_9635001 RAL-85 642 chr3L 9646467 9646477 chr3L 9646592 9646602 5 125 5.5 0.0 2.8 1.3 135 chr3L 9646467 intron,intron fry -,CG33696 + chr3L 9646534 intron,intron fry -,CG33696 + chr3L 9646602 intron,intron fry -,CG33696 + chr3L_5_9645001 chr3L_9645001 RAL-85 643 chr3L 9871193 9871223 chr3L 9871289 9871319 5 91 1.0 2.5 1.8 1.8 126 chr3L 9871193 intergenic not near genes chr3L 9871256 intergenic not near genes chr3L 9871319 intergenic not near genes chr3L_5_9870001 chr3L_9870001 RAL-85 644 chr3L 9918894 9918907 chr3L 9918989 9919002 5 95 4.0 7.5 5.8 0.7 108 chr3L 9918894 intron CG34356 + chr3L 9918948 intron CG34356 + chr3L 9919002 intron CG34356 + chr3L_5_9915001 chr3L_9915001 RAL-85 645 chr3L 9951201 9951230 chr3L 9951288 9951317 7 87 2.5 3.5 3.0 1.8 116 chr3L 9951201 intron CG34356 + chr3L 9951259 intron CG34356 + chr3L 9951317 intron CG34356 + chr3L_7_9950001 chr3L_9950001 RAL-85 646 chr3L 10127749 10127771 chr3L 10127814 10127823 9 71 5.0 2.0 3.5 2.0 74 chr3L 10127749 intron dpr6 + chr3L 10127786 intron dpr6 + chr3L 10127823 intron dpr6 + chr3L_9_10125001 chr3L_10125001 RAL-85 647 chr3L 10161431 10161461 chr3L 10161510 10161540 5 77 0.0 4.0 2.0 1.7 109 chr3L 10161431 intron dpr10 - chr3L 10161486 intron dpr10 - chr3L 10161540 intron dpr10 - chr3L_5_10160001 chr3L_10160001 RAL-85 648 chr3L 10219779 10219811 chr3L 10220291 10220322 7 511 2.5 3.5 3.0 1.8 543 chr3L 10219779 exon CG32055 - chr3L 10220050 exon CG32055 - chr3L 10220322 intergenic CG32055 -,scramb1 - chr3L_7_10220001 chr3L_10220001 RAL-85 649 chr3L 10308754 10308776 chr3L 10308831 10308853 6 77 2.0 5.5 3.8 1.2 99 chr3L 10308754 intergenic not near genes chr3L 10308804 intergenic not near genes chr3L 10308853 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-85 650 chr3L 10316057 10316084 chr3L 10316168 10316193 6 110 0.5 0.0 0.2 5.0 136 chr3L 10316057 intergenic not near genes chr3L 10316125 intergenic not near genes chr3L 10316193 intergenic not near genes chr3L_6_10315001 chr3L_10315001 RAL-85 651 chr3L 10348669 10348675 chr3L 10348785 10348792 4 117 2.0 0.0 1.0 2.0 123 chr3L 10348669 intron CR44327 + chr3L 10348730 intron CR44327 + chr3L 10348792 intron CR44327 + chr3L_4_10345001 chr3L_10345001 RAL-85 652 chr3L 10373050 10373075 chr3L 10375982 10376008 4 2932 12.5 7.5 10.0 0.4 2958 chr3L 10373050 intergenic not near genes chr3L 10374529 intergenic not near genes chr3L 10376008 intergenic not near genes chr3L_4_10370001 chr3L_10370001 RAL-85 653 chr3L 10414947 10414976 chr3L 10417319 10417348 Doc 5 2372 0.5 0.5 0.5 3.3 2401 chr3L 10414947 intergenic CG12362 + chr3L 10416148 intergenic not near genes chr3L 10417348 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-85 654 chr3L 10417569 10417606 chr3L 10417646 10417683 11 76 4.5 2.0 3.2 2.6 114 chr3L 10417569 intergenic not near genes chr3L 10417626 intergenic not near genes chr3L 10417683 intergenic not near genes chr3L_11_10415001 chr3L_10415001 RAL-85 655 chr3L 10448413 10448431 chr3L 10448709 10448727 7 296 2.5 4.0 3.2 1.7 314 chr3L 10448413 intergenic not near genes chr3L 10448570 intergenic not near genes chr3L 10448727 intergenic not near genes chr3L_7_10445001 chr3L_10445001 RAL-85 656 chr3L 10509482 10509506 chr3L 10509608 10509635 8 127 3.5 2.0 2.8 2.1 153 chr3L 10509482 intron A2bp1 + chr3L 10509558 intron A2bp1 + chr3L 10509635 intron A2bp1 + chr3L_8_10505001 chr3L_10505001 RAL-85 657 chr3L 10654134 10654154 chr3L 10654218 10654239 6 84 1.0 0.5 0.8 3.3 105 chr3L 10654134 intron CG32066 - chr3L 10654186 intron CG32066 - chr3L 10654239 intron CG32066 - chr3L_6_10650001 chr3L_10650001 RAL-85 658 chr3L 10762830 10762848 chr3L 10762914 10762932 5 83 6.0 4.5 5.2 0.8 102 chr3L 10762830 intergenic not near genes chr3L 10762881 intergenic not near genes chr3L 10762932 intergenic not near genes chr3L_5_10760001 chr3L_10760001 RAL-85 659 chr3L 10956458 10956469 chr3L 10956576 10956586 5 117 1.0 4.0 2.5 1.4 128 chr3L 10956458 intergenic not near genes chr3L 10956522 intergenic not near genes chr3L 10956586 intergenic not near genes chr3L_5_10955001 chr3L_10955001 RAL-85 660 chr3L 11087064 11087087 chr3L 11088850 11088876 S-element 7 1788 5.0 2.0 3.5 1.6 1812 chr3L 11087064 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088876 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 RAL-85 661 chr3L 11097501 11097530 chr3L 11097578 11097607 4 77 3.5 1.5 2.5 1.1 106 chr3L 11097501 intron,3` UTR pncr011:3L +,CG6272 - chr3L 11097554 intron,3` UTR pncr011:3L +,CG6272 - chr3L 11097607 intron,3` UTR pncr011:3L +,CG6272 - chr3L_4_11095001 chr3L_11095001 RAL-85 662 chr3L 11105299 11105316 chr3L 11107010 11107026 X-element 4 1711 1.5 4.0 2.8 1.1 1727 chr3L 11105299 intergenic not near genes chr3L 11106162 intergenic not near genes chr3L 11107026 3` UTR CG32073 - chr3L_4_11105001 chr3L_11105001 RAL-85 663 chr3L 11135777 11135806 chr3L 11135862 11135891 6 85 0.0 4.0 2.0 2.0 114 chr3L 11135777 intergenic CG32082 +,CG14143 + chr3L 11135834 intergenic CG32082 +,CG14143 + chr3L 11135891 intergenic CG32082 +,CG14143 + chr3L_6_11135001 chr3L_11135001 RAL-85 664 chr3L 11239594 11239615 chr3L 11239682 11239702 4 88 4.0 1.0 2.5 1.1 108 chr3L 11239594 intergenic not near genes chr3L 11239648 intergenic not near genes chr3L 11239702 intergenic not near genes chr3L_4_11235001 chr3L_11235001 RAL-85 665 chr3L 11329689 11329727 chr3L 11332894 11332932 jockey 10 3195 2.0 4.5 3.2 2.4 3243 chr3L 11329689 intergenic not near genes chr3L 11331310 intergenic not near genes chr3L 11332932 intergenic not near genes chr3L_10_11330001 chr3L_11330001 RAL-85 666 chr3L 11385599 11385628 chr3L 11385844 11385870 11 244 3.0 2.0 2.5 3.1 271 chr3L 11385599 intergenic not near genes chr3L 11385734 intergenic not near genes chr3L 11385870 intergenic not near genes chr3L_11_11385001 chr3L_11385001 RAL-85 667 chr3L 11456697 11456732 chr3L 11456782 11456817 6 85 1.0 1.0 1.0 3.0 120 chr3L 11456697 intergenic CG12289 - chr3L 11456757 intergenic CG12289 - chr3L 11456817 intergenic CG12289 - chr3L_6_11455001 chr3L_11455001 RAL-85 668 chr3L 11495062 11495086 chr3L 11516198 11516222 roo 7 21136 30.5 22.0 26.2 0.3 21160 chr3L 11495062 exon chrb + chr3L 11505642 intergenic not near genes chr3L 11516222 intron CG7512 + chr3L_7_11505001 chr3L_11505001 RAL-85 669 chr3L 11549587 11549609 chr3L 11549813 11549834 6 226 3.5 1.0 2.2 1.9 247 chr3L 11549587 intron Mob2 - chr3L 11549710 intron Mob2 - chr3L 11549834 intron Mob2 - chr3L_6_11545001 chr3L_11545001 RAL-85 670 chr3L 11587919 11587954 chr3L 11587995 11588030 9 76 1.5 1.5 1.5 3.6 111 chr3L 11587919 intergenic rt - chr3L 11587974 intergenic rt - chr3L 11588030 intergenic rt - chr3L_9_11585001 chr3L_11585001 RAL-85 671 chr3L 11590766 11590777 chr3L 11590848 11590855 4 80 0.0 2.5 1.2 1.8 89 chr3L 11590766 intergenic CG33268 - chr3L 11590810 intergenic CG33268 - chr3L 11590855 intergenic CG33268 - chr3L_4_11590001 chr3L_11590001 RAL-85 672 chr3L 11676799 11676812 chr3L 11676881 11676890 8 81 5.0 2.5 3.8 1.7 91 chr3L 11676799 intron CG32085 - chr3L 11676844 intron CG32085 - chr3L 11676890 intron CG32085 - chr3L_8_11675001 chr3L_11675001 RAL-85 673 chr3L 11676814 11676831 chr3L 11676877 11676913 4 77 2.0 1.5 1.8 1.4 99 chr3L 11676814 intron CG32085 - chr3L 11676864 intron CG32085 - chr3L 11676913 intron CG32085 - chr3L_4_11675001 chr3L_11675001 RAL-85 674 chr3L 11740141 11740154 chr3L 11740239 11740250 10 97 9.0 10.0 9.5 1.0 109 chr3L 11740141 intron CG6024 - chr3L 11740196 intron CG6024 - chr3L 11740250 intron CG6024 - chr3L_10_11740001 chr3L_11740001 RAL-85 675 chr3L 11744014 11744038 chr3L 11744122 11744146 7 108 6.0 0.0 3.0 1.8 132 chr3L 11744014 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744146 intron CG6024 - chr3L_7_11740001 chr3L_11740001 RAL-85 676 chr3L 11847916 11847945 chr3L 11847999 11848025 9 83 2.0 1.5 1.8 3.2 109 chr3L 11847916 intergenic CG12521 - chr3L 11847970 intergenic CG12521 - chr3L 11848025 intergenic CG12521 - chr3L_9_11845001 chr3L_11845001 RAL-85 677 chr3L 11849341 11849352 chr3L 11849441 11849452 5 100 2.5 2.0 2.2 1.6 111 chr3L 11849341 intergenic not near genes chr3L 11849396 intergenic not near genes chr3L 11849452 intergenic not near genes chr3L_5_11845001 chr3L_11845001 RAL-85 678 chr3L 11943500 11943518 chr3L 11943600 11943619 4 100 0.5 0.5 0.5 2.7 119 chr3L 11943500 intergenic Rpt4R +,CG5883 - chr3L 11943560 intergenic Rpt4R +,CG5883 - chr3L 11943619 intergenic CG5883 -,Rpt4R + chr3L_4_11940001 chr3L_11940001 RAL-85 679 chr3L 12013915 12013932 chr3L 12014006 12014023 6 91 2.5 3.5 3.0 1.5 108 chr3L 12013915 intron rols - chr3L 12013969 intron rols - chr3L 12014023 intron rols - chr3L_6_12010001 chr3L_12010001 RAL-85 680 chr3L 12052729 12052736 chr3L 12052818 12052825 4 89 0.0 5.0 2.5 1.1 96 chr3L 12052729 intron rols - chr3L 12052777 intron rols - chr3L 12052825 intron rols - chr3L_4_12050001 chr3L_12050001 RAL-85 681 chr3L 12105971 12106003 chr3L 12106058 12106090 13 87 4.0 4.5 4.2 2.5 119 chr3L 12105971 intergenic not near genes chr3L 12106030 intergenic not near genes chr3L 12106090 intergenic not near genes chr3L_13_12105001 chr3L_12105001 RAL-85 682 chr3L 12158783 12158808 chr3L 12160254 12160279 9 1471 39.0 28.0 33.5 0.3 1496 chr3L 12158783 intron CG9760 - chr3L 12159531 exon CG9760 - chr3L 12160279 intron CG9760 - chr3L_9_12155001 chr3L_12155001 RAL-85 683 chr3L 12156429 12156459 chr3L 12160315 12160344 8 3886 8.5 24.0 16.2 0.5 3915 chr3L 12156429 3` UTR Nrx-IV + chr3L 12158386 intron CG9760 - chr3L 12160344 intron CG9760 - chr3L_8_12155001 chr3L_12155001 RAL-85 684 chr3L 12304090 12304114 chr3L 12304166 12304190 7 74 3.0 6.5 4.8 1.2 100 chr3L 12304090 intergenic not near genes chr3L 12304140 intergenic not near genes chr3L 12304190 intergenic not near genes chr3L_7_12300001 chr3L_12300001 RAL-85 685 chr3L 12353924 12353953 chr3L 12354011 12354042 9 88 3.0 4.0 3.5 2.0 118 chr3L 12353924 intergenic not near genes chr3L 12353983 intergenic not near genes chr3L 12354042 intergenic not near genes chr3L_9_12350001 chr3L_12350001 RAL-85 686 chr3L 12675306 12675315 chr3L 12675387 12675396 6 81 5.5 2.0 3.8 1.2 90 chr3L 12675306 intergenic not near genes chr3L 12675351 intergenic not near genes chr3L 12675396 intergenic not near genes chr3L_6_12675001 chr3L_12675001 RAL-85 687 chr3L 12720328 12720359 chr3L 12720413 12720443 4 85 0.5 0.5 0.5 2.7 115 chr3L 12720328 intergenic not near genes chr3L 12720386 intergenic not near genes chr3L 12720443 intergenic not near genes chr3L_4_12720001 chr3L_12720001 RAL-85 688 chr3L 12894808 12894816 chr3L 12894877 12894894 8 76 5.5 5.5 5.5 1.2 86 chr3L 12894808 intergenic CG14118 + chr3L 12894851 intergenic CG14118 + chr3L 12894894 intergenic CG14118 + chr3L_8_12890001 chr3L_12890001 RAL-85 689 chr3L 12919283 12919307 chr3L 12924749 12924777 Rt1c 14 5470 4.5 2.0 3.2 3.3 5494 chr3L 12919283 intergenic not near genes chr3L 12922030 intergenic not near genes chr3L 12924777 intergenic not near genes chr3L_14_12920001 chr3L_12920001 RAL-85 690 chr3L 12950102 12950123 chr3L 12950178 12950192 4 74 3.5 1.0 2.2 1.2 90 chr3L 12950102 intergenic not near genes chr3L 12950147 intergenic not near genes chr3L 12950192 intergenic not near genes chr3L_4_12950001 chr3L_12950001 RAL-85 691 chr3L 12957795 12957820 chr3L 12962277 12962302 copia 5 4482 0.5 2.0 1.2 2.3 4507 chr3L 12957795 intergenic not near genes chr3L 12960048 intergenic not near genes chr3L 12962302 intergenic not near genes chr3L_5_12960001 chr3L_12960001 RAL-85 692 chr3L 12977758 12977774 chr3L 12977861 12977877 5 103 1.0 5.5 3.2 1.2 119 chr3L 12977758 intergenic not near genes chr3L 12977818 intergenic not near genes chr3L 12977877 intergenic not near genes chr3L_5_12975001 chr3L_12975001 RAL-85 693 chr3L 13007694 13007948 chr3L 13007773 13008032 6 78 0.5 1.5 1.0 3.0 338 chr3L 13007694 exon CG11263 + chr3L 13007863 3` UTR CG11263 + chr3L 13008032 intergenic CG11263 +,CG14117 + chr3L_6_13005001 chr3L_13005001 RAL-85 694 chr3L 13073135 13073148 chr3L 13073332 13073345 6 197 5.5 2.0 3.8 1.2 210 chr3L 13073135 intergenic not near genes chr3L 13073240 intergenic not near genes chr3L 13073345 intergenic not near genes chr3L_6_13070001 chr3L_13070001 RAL-85 695 chr3L 13171389 13171400 chr3L 13171468 13171478 5 78 2.5 2.5 2.5 1.4 89 chr3L 13171389 intergenic not near genes chr3L 13171434 intergenic not near genes chr3L 13171478 intergenic not near genes chr3L_5_13170001 chr3L_13170001 RAL-85 696 chr3L 13313988 13314025 chr3L 13314114 13314151 5 126 0.0 4.0 2.0 1.7 163 chr3L 13313988 intergenic not near genes chr3L 13314070 intergenic not near genes chr3L 13314151 intergenic not near genes chr3L_5_13310001 chr3L_13310001 RAL-85 697 chr3L 13338343 13338366 chr3L 13338458 13338481 4 115 0.0 0.5 0.2 3.3 138 chr3L 13338343 intergenic not near genes chr3L 13338412 intergenic not near genes chr3L 13338481 intergenic not near genes chr3L_4_13335001 chr3L_13335001 RAL-85 698 chr3L 13525158 13525185 chr3L 13532954 13532981 roo 4 7796 2.5 3.0 2.8 1.1 7823 chr3L 13525158 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532981 intergenic not near genes chr3L_4_13525001 chr3L_13525001 RAL-85 699 chr3L 13626692 13626718 chr3L 13626776 13626802 5 84 1.5 2.5 2.0 1.7 110 chr3L 13626692 intron bru-3 - chr3L 13626747 intron bru-3 - chr3L 13626802 intron bru-3 - chr3L_5_13625001 chr3L_13625001 RAL-85 700 chr3L 13633414 13633437 chr3L 13633767 13633790 14 354 3.5 4.0 3.8 2.9 376 chr3L 13633414 intron bru-3 - chr3L 13633602 intron bru-3 - chr3L 13633790 intron bru-3 - chr3L_14_13630001 chr3L_13630001 RAL-85 701 chr3L 13648887 13648920 chr3L 13648976 13649010 7 90 2.5 2.5 2.5 2.0 123 chr3L 13648887 intron bru-3 - chr3L 13648948 intron bru-3 - chr3L 13649010 intron bru-3 - chr3L_7_13645001 chr3L_13645001 RAL-85 702 chr3L 13714148 13714170 chr3L 13714229 13714251 4 81 2.0 0.5 1.2 1.8 103 chr3L 13714148 intron bru-3 - chr3L 13714200 intron bru-3 - chr3L 13714251 intron bru-3 - chr3L_4_13710001 chr3L_13710001 RAL-85 703 chr3L 13766910 13766921 chr3L 13767008 13767019 4 98 0.5 1.0 0.8 2.2 109 chr3L 13766910 intron bru-3 - chr3L 13766964 intron bru-3 - chr3L 13767019 intron bru-3 - chr3L_4_13765001 chr3L_13765001 RAL-85 704 chr3L 13862730 13862762 chr3L 13862809 13862841 12 78 3.0 3.5 3.2 2.9 111 chr3L 13862730 intron CG8745 - chr3L 13862786 intron CG8745 - chr3L 13862841 intron CG8745 - chr3L_12_13860001 chr3L_13860001 RAL-85 705 chr3L 13925566 13925579 chr3L 13925647 13925660 5 81 1.5 1.0 1.2 2.3 94 chr3L 13925566 intergenic Rgl -,CG8833 - chr3L 13925613 intergenic CG8833 -,Rgl - chr3L 13925660 intergenic CG8833 -,Rgl - chr3L_5_13925001 chr3L_13925001 RAL-85 706 chr3L 14119010 14119044 chr3L 14119106 14119140 14 96 4.0 2.0 3.0 3.5 130 chr3L 14119010 intron Sox21b - chr3L 14119075 intron Sox21b - chr3L 14119140 intron Sox21b - chr3L_14_14115001 chr3L_14115001 RAL-85 707 chr3L 14245568 14245591 chr3L 14245662 14245685 1360 7 94 4.5 2.5 3.5 1.6 117 chr3L 14245568 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245685 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-85 708 chr3L 14282589 14282606 chr3L 14282669 14282683 4 79 4.0 5.0 4.5 0.7 94 chr3L 14282589 intron fz + chr3L 14282636 intron fz + chr3L 14282683 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-85 709 chr3L 14295980 14296016 chr3L 14296466 14296502 roo 11 485 3.5 1.0 2.2 3.4 522 chr3L 14295980 intron fz + chr3L 14296241 intron fz + chr3L 14296502 intron fz + chr3L_11_14295001 chr3L_14295001 RAL-85 710 chr3L 14326979 14326997 chr3L 14327115 14327133 4 136 0.5 4.0 2.2 1.2 154 chr3L 14326979 intron fz + chr3L 14327056 intron fz + chr3L 14327133 intron fz + chr3L_4_14325001 chr3L_14325001 RAL-85 711 chr3L 14356518 14356550 chr3L 14356598 14356630 13 80 1.0 4.5 2.8 3.4 112 chr3L 14356518 intron fz + chr3L 14356574 intron fz + chr3L 14356630 intron fz + chr3L_13_14355001 chr3L_14355001 RAL-85 712 chr3L 14370023 14370044 chr3L 14370104 14370119 4 80 3.5 0.5 2.0 1.3 96 chr3L 14370023 intergenic CG13481 - chr3L 14370071 intergenic CG13481 - chr3L 14370119 intergenic CG13481 - chr3L_4_14370001 chr3L_14370001 RAL-85 713 chr3L 14375174 14375208 chr3L 14375254 14375287 4 80 2.0 2.5 2.2 1.2 113 chr3L 14375174 intergenic not near genes chr3L 14375230 intergenic not near genes chr3L 14375287 intergenic not near genes chr3L_4_14375001 chr3L_14375001 RAL-85 714 chr3L 14693541 14693574 chr3L 14693640 14693673 11 99 4.0 1.5 2.8 2.9 132 chr3L 14693541 intron ome + chr3L 14693607 intron ome + chr3L 14693673 intron ome + chr3L_11_14690001 chr3L_14690001 RAL-85 715 chr3L 14721183 14721203 chr3L 14723023 14723046 Rt1c 6 1842 6.5 5.0 5.8 0.9 1863 chr3L 14721183 intron ome + chr3L 14722114 intron ome + chr3L 14723046 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-85 716 chr3L 14729514 14729548 chr3L 14729627 14729661 6 113 0.5 0.0 0.2 5.0 147 chr3L 14729514 intron ome + chr3L 14729588 intron ome + chr3L 14729661 intron ome + chr3L_6_14725001 chr3L_14725001 RAL-85 717 chr3L 15261900 15261918 chr3L 15262001 15262019 10 101 3.5 4.0 3.8 2.1 119 chr3L 15261900 intergenic not near genes chr3L 15261960 intergenic not near genes chr3L 15262019 intergenic not near genes chr3L_10_15260001 chr3L_15260001 RAL-85 718 chr3L 15290486 15290503 chr3L 15290565 15290582 5 78 3.5 1.0 2.2 1.6 96 chr3L 15290486 intergenic not near genes chr3L 15290534 intergenic not near genes chr3L 15290582 intergenic not near genes chr3L_5_15290001 chr3L_15290001 RAL-85 719 chr3L 15348123 15348141 chr3L 15348281 15348299 6 158 2.0 1.5 1.8 2.1 176 chr3L 15348123 intergenic not near genes chr3L 15348211 intergenic not near genes chr3L 15348299 intergenic not near genes chr3L_6_15345001 chr3L_15345001 RAL-85 720 chr3L 15382675 15382706 chr3L 15382811 15382842 7 136 1.5 2.0 1.8 2.5 167 chr3L 15382675 intergenic not near genes chr3L 15382758 intergenic not near genes chr3L 15382842 intergenic not near genes chr3L_7_15380001 chr3L_15380001 RAL-85 721 chr3L 15444649 15444681 chr3L 15444743 15444775 18 92 4.5 2.0 3.2 4.3 126 chr3L 15444649 intergenic not near genes chr3L 15444712 intergenic not near genes chr3L 15444775 intergenic not near genes chr3L_18_15440001 chr3L_15440001 RAL-85 722 chr3L 15482415 15482439 chr3L 15482507 15482531 7 92 2.5 1.0 1.8 2.5 116 chr3L 15482415 intergenic not near genes chr3L 15482473 intergenic not near genes chr3L 15482531 intergenic not near genes chr3L_7_15480001 chr3L_15480001 RAL-85 723 chr3L 15541620 15541636 chr3L 15541711 15541727 4 91 4.0 0.5 2.2 1.2 107 chr3L 15541620 intron CrebA + chr3L 15541674 intron CrebA + chr3L 15541727 intron CrebA + chr3L_4_15540001 chr3L_15540001 RAL-85 724 chr3L 15742962 15742990 chr3L 15743123 15743150 4 160 3.0 0.0 1.5 1.6 188 chr3L 15742962 intergenic not near genes chr3L 15743056 intergenic not near genes chr3L 15743150 intergenic not near genes chr3L_4_15740001 chr3L_15740001 RAL-85 725 chr3L 15746063 15746094 chr3L 15746139 15746170 6 76 0.0 2.0 1.0 3.0 107 chr3L 15746063 intergenic not near genes chr3L 15746116 intergenic not near genes chr3L 15746170 intergenic not near genes chr3L_6_15745001 chr3L_15745001 RAL-85 726 chr3L 15899234 15899263 chr3L 15899786 15899823 jockey 12 559 1.5 4.0 2.8 3.2 589 chr3L 15899234 intergenic pHCl - chr3L 15899528 intergenic pHCl - chr3L 15899823 intergenic sff - chr3L_12_15895001 chr3L_15895001 RAL-85 727 chr3L 16015840 16015856 chr3L 16015918 16015934 4 77 2.0 0.0 1.0 2.0 94 chr3L 16015840 intergenic not near genes chr3L 16015887 intergenic not near genes chr3L 16015934 intergenic not near genes chr3L_4_16015001 chr3L_16015001 RAL-85 728 chr3L 16072325 16072346 chr3L 16072406 16072427 5 81 1.0 2.5 1.8 1.8 102 chr3L 16072325 intron Mbs + chr3L 16072376 intron Mbs + chr3L 16072427 intron Mbs + chr3L_5_16070001 chr3L_16070001 RAL-85 729 chr3L 16180348 16180362 chr3L 16180450 16180464 5 102 2.0 1.5 1.8 1.8 116 chr3L 16180348 intergenic not near genes chr3L 16180406 intergenic not near genes chr3L 16180464 intergenic not near genes chr3L_5_16180001 chr3L_16180001 RAL-85 730 chr3L 16184106 16184138 chr3L 16188925 16188957 X-element 4 4818 0.0 1.0 0.5 2.7 4851 chr3L 16184106 intergenic not near genes chr3L 16186532 intergenic not near genes chr3L 16188957 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-85 731 chr3L 16258387 16258417 chr3L 16258473 16258503 5 84 3.0 1.0 2.0 1.7 116 chr3L 16258387 intergenic not near genes chr3L 16258445 intergenic not near genes chr3L 16258503 intergenic not near genes chr3L_5_16255001 chr3L_16255001 RAL-85 732 chr3L 16443867 16443878 chr3L 16446207 16446218 Doc 4 2340 0.5 2.0 1.2 1.8 2351 chr3L 16443867 intron,intron CG33158 +,dsx-c73A - chr3L 16445042 intron,intron CG33158 +,dsx-c73A - chr3L 16446218 intron,intron CG33158 +,dsx-c73A - chr3L_4_16445001 chr3L_16445001 RAL-85 733 chr3L 16493991 16494007 chr3L 16494507 16494520 jockey 4 516 0.5 2.0 1.2 1.8 529 chr3L 16493991 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494256 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494520 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_4_16490001 chr3L_16490001 RAL-85 734 chr3L 16509401 16509411 chr3L 16509552 16509562 4 151 3.0 1.5 2.2 1.2 161 chr3L 16509401 intron CG43373 - chr3L 16509482 intron CG43373 - chr3L 16509562 intron CG43373 - chr3L_4_16505001 chr3L_16505001 RAL-85 735 chr3L 16520617 16520634 chr3L 16520746 16520763 4 129 0.5 2.0 1.2 1.8 146 chr3L 16520617 intron CG43373 - chr3L 16520690 intron CG43373 - chr3L 16520763 intron CG43373 - chr3L_4_16520001 chr3L_16520001 RAL-85 736 chr3L 16817877 16817905 chr3L 16818017 16818045 6 140 4.0 3.0 3.5 1.3 168 chr3L 16817877 intron,intron nudC +,CG13024 - chr3L 16817961 intron,intron nudC +,CG13024 - chr3L 16818045 intron,intron nudC +,CG13024 - chr3L_6_16815001 chr3L_16815001 RAL-85 737 chr3L 16926170 16926201 chr3L 16926378 16926409 13 207 0.5 4.0 2.2 4.1 239 chr3L 16926170 intron CG13023 - chr3L 16926290 intron CG13023 - chr3L 16926409 intron CG13023 - chr3L_13_16925001 chr3L_16925001 RAL-85 738 chr3L 16933485 16933520 chr3L 16933740 16933774 10 254 6.5 6.0 6.2 1.4 289 chr3L 16933485 intron CG11905 - chr3L 16933630 intron CG11905 - chr3L 16933774 intron CG11905 - chr3L_10_16930001 chr3L_16930001 RAL-85 739 chr3L 16945728 16945754 chr3L 16954881 16954907 roo 13 9151 10.5 3.0 6.8 1.7 9179 chr3L 16945728 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954907 5` UTR Nc73EF + chr3L_13_16950001 chr3L_16950001 RAL-85 740 chr3L 16945756 16945761 chr3L 16954879 16954914 roo 5 9147 7.5 3.0 5.2 0.8 9158 chr3L 16945756 exon Obp73a + chr3L 16950335 intergenic not near genes chr3L 16954914 5` UTR Nc73EF + chr3L_5_16950001 chr3L_16950001 RAL-85 741 chr3L 17085014 17085033 chr3L 17094163 17094182 roo 5 9149 0.5 1.0 0.8 2.8 9168 chr3L 17085014 intron Rbp6 - chr3L 17089598 intron Rbp6 - chr3L 17094182 intron Rbp6 - chr3L_5_17085001 chr3L_17085001 RAL-85 742 chr3L 17113873 17113900 chr3L 17113958 17113985 10 85 4.0 6.5 5.2 1.6 112 chr3L 17113873 intron Rbp6 - chr3L 17113929 intron Rbp6 - chr3L 17113985 intron Rbp6 - chr3L_10_17110001 chr3L_17110001 RAL-85 743 chr3L 17412722 17412744 chr3L 17414652 17414674 4 1929 3.0 2.0 2.5 1.1 1952 chr3L 17412722 intron blot - chr3L 17413698 intron blot - chr3L 17414674 intron blot - chr3L_4_17410001 chr3L_17410001 RAL-85 744 chr3L 17412745 17412747 chr3L 17414651 17414677 4 1921 3.0 2.0 2.5 1.1 1932 chr3L 17412745 intron blot - chr3L 17413711 intron blot - chr3L 17414677 intron blot - chr3L_4_17410001 chr3L_17410001 RAL-85 745 chr3L 17498103 17498114 chr3L 17498180 17498191 6 77 1.5 2.5 2.0 2.0 88 chr3L 17498103 intron Oatp74D + chr3L 17498147 intron Oatp74D + chr3L 17498191 intron Oatp74D + chr3L_6_17495001 chr3L_17495001 RAL-85 746 chr3L 17516994 17517012 chr3L 17524536 17524570 412 5 7555 1.0 5.5 3.2 1.2 7576 chr3L 17516994 intron CG7564 + chr3L 17520782 intron CG7564 + chr3L 17524570 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-85 747 chr3L 17535821 17535846 chr3L 17535935 17535953 14 111 3.0 6.0 4.5 2.5 132 chr3L 17535821 intron Nedd4 + chr3L 17535887 intron Nedd4 + chr3L 17535953 intron Nedd4 + chr3L_14_17535001 chr3L_17535001 RAL-85 748 chr3L 18008833 18008864 chr3L 18008937 18008968 19 103 3.5 3.5 3.5 4.2 135 chr3L 18008833 intron Eip75B - chr3L 18008900 intron Eip75B - chr3L 18008968 intron Eip75B - chr3L_19_18005001 chr3L_18005001 RAL-85 749 chr3L 18146789 18146807 chr3L 18147221 18147239 10 431 3.5 5.5 4.5 1.8 450 chr3L 18146789 intergenic not near genes chr3L 18147014 intergenic not near genes chr3L 18147239 intergenic not near genes chr3L_10_18145001 chr3L_18145001 RAL-85 750 chr3L 18607071 18607075 chr3L 18607150 18607157 4 81 9.0 4.0 6.5 0.5 86 chr3L 18607071 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18607114 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18607157 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_4_18605001 chr3L_18605001 RAL-85 751 chr3L 18607076 18607098 chr3L 18607149 18607177 5 78 5.5 4.0 4.8 0.9 101 chr3L 18607076 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18607126 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18607177 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_5_18605001 chr3L_18605001 RAL-85 752 chr3L 18656182 18656215 chr3L 18656267 18656300 16 85 5.5 4.0 4.8 2.8 118 chr3L 18656182 intron MYPT-75D + chr3L 18656241 intron MYPT-75D + chr3L 18656300 intron MYPT-75D + chr3L_16_18655001 chr3L_18655001 RAL-85 753 chr3L 18721773 18721805 chr3L 18721864 18721896 6 91 1.5 0.5 1.0 3.0 123 chr3L 18721773 intergenic CG12477 - chr3L 18721834 intergenic CG12477 - chr3L 18721896 3` UTR CG12477 - chr3L_6_18720001 chr3L_18720001 RAL-85 754 chr3L 18772407 18772441 chr3L 18781088 18781122 roo 8 8681 2.0 2.5 2.2 2.5 8715 chr3L 18772407 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781122 intron ftz-f1 - chr3L_8_18775001 chr3L_18775001 RAL-85 755 chr3L 18942864 18942876 chr3L 18942971 18942989 5 112 3.5 3.5 3.5 1.1 125 chr3L 18942864 intron CG32204 - chr3L 18942926 intron CG32204 - chr3L 18942989 intron CG32204 - chr3L_5_18940001 chr3L_18940001 RAL-85 756 chr3L 19029458 19029480 chr3L 19029555 19029581 8 101 4.5 4.5 4.5 1.5 123 chr3L 19029458 intron nkd - chr3L 19029520 intron nkd - chr3L 19029581 intron nkd - chr3L_8_19025001 chr3L_19025001 RAL-85 757 chr3L 19082039 19082071 chr3L 19082141 19082173 12 102 3.0 3.0 3.0 3.0 134 chr3L 19082039 intron Mkp3 - chr3L 19082106 intron Mkp3 - chr3L 19082173 intron Mkp3 - chr3L_12_19080001 chr3L_19080001 RAL-85 758 chr3L 19115643 19115677 chr3L 19115818 19115829 BS 7 171 3.5 3.0 3.2 1.7 186 chr3L 19115643 intron CG14082 - chr3L 19115736 intron CG14082 - chr3L 19115829 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-85 759 chr3L 19117042 19117071 chr3L 19124487 19124518 mdg1 14 7443 5.0 1.5 3.2 3.3 7476 chr3L 19117042 intron CG14082 - chr3L 19120780 intron CG14082 - chr3L 19124518 intron CG14082 - chr3L_14_19120001 chr3L_19120001 RAL-85 760 chr3L 19182393 19182416 chr3L 19182474 19182497 6 81 0.0 2.0 1.0 3.0 104 chr3L 19182393 intron fz2 - chr3L 19182445 intron fz2 - chr3L 19182497 intron fz2 - chr3L_6_19180001 chr3L_19180001 RAL-85 761 chr3L 19208056 19208092 chr3L 19209430 19209464 Doc 11 1373 2.5 5.0 3.8 2.3 1408 chr3L 19208056 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209464 intron fz2 - chr3L_11_19205001 chr3L_19205001 RAL-85 762 chr3L 19244113 19244130 chr3L 19244191 19244207 11 78 4.5 7.0 5.8 1.6 94 chr3L 19244113 intergenic not near genes chr3L 19244160 intergenic not near genes chr3L 19244207 intergenic not near genes chr3L_11_19240001 chr3L_19240001 RAL-85 763 chr3L 19263251 19263259 chr3L 19263410 19263420 4 161 0.5 2.5 1.5 1.6 169 chr3L 19263251 intron Max - chr3L 19263336 intron Max - chr3L 19263420 exon Max - chr3L_4_19260001 chr3L_19260001 RAL-85 764 chr3L 19274199 19274208 chr3L 19274278 19274287 4 79 1.0 1.0 1.0 2.0 88 chr3L 19274199 intergenic CG14085 + chr3L 19274243 intergenic CG14085 + chr3L 19274287 intergenic CG14085 + chr3L_4_19270001 chr3L_19270001 RAL-85 765 chr3L 19423071 19423084 chr3L 19423144 19423160 6 82 3.0 4.0 3.5 1.3 89 chr3L 19423071 3` UTR CR32205 - chr3L 19423116 3` UTR CR32205 - chr3L 19423160 3` UTR CR32205 - chr3L_6_19420001 chr3L_19420001 RAL-85 766 chr3L 19434768 19434786 chr3L 19434842 19434865 4 78 0.5 1.5 1.0 2.0 97 chr3L 19434768 intergenic not near genes chr3L 19434816 intergenic not near genes chr3L 19434865 intergenic not near genes chr3L_4_19430001 chr3L_19430001 RAL-85 767 chr3L 19527926 19527950 chr3L 19528005 19528029 6 79 2.5 1.5 2.0 2.0 103 chr3L 19527926 intergenic not near genes chr3L 19527978 intergenic not near genes chr3L 19528029 intergenic not near genes chr3L_6_19525001 chr3L_19525001 RAL-85 768 chr3L 19848509 19848533 chr3L 19857699 19857723 roo 5 9190 0.0 4.0 2.0 1.7 9214 chr3L 19848509 intron Papss + chr3L 19853116 intron Papss + chr3L 19857723 intron Papss + chr3L_5_19850001 chr3L_19850001 RAL-85 769 chr3L 19861822 19861852 chr3L 19863608 19863640 S-element 4 1788 0.5 0.5 0.5 2.7 1818 chr3L 19861822 5` UTR CR45433 + chr3L 19862731 intergenic not near genes chr3L 19863640 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-85 770 chr3L 19925393 19925412 chr3L 19925528 19925547 4 135 3.0 2.0 2.5 1.1 154 chr3L 19925393 intron Grasp65 + chr3L 19925470 intron Grasp65 + chr3L 19925547 exon Grasp65 + chr3L_4_19925001 chr3L_19925001 RAL-85 771 chr3L 19961260 19961383 chr3L 19961337 19961445 17 77 0.0 0.0 0.0 17.0 185 chr3L 19961260 intron Ac76E + chr3L 19961352 intron Ac76E + chr3L 19961445 intron Ac76E + chr3L_17_19960001 chr3L_19960001 RAL-85 772 chr3L 19981206 19981212 chr3L 19981286 19981292 4 80 2.5 0.0 1.2 1.8 86 chr3L 19981206 intergenic CG17732 + chr3L 19981249 intergenic CG17732 + chr3L 19981292 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-85 773 chr3L 20081749 20081760 chr3L 20081832 20081843 5 83 1.0 1.0 1.0 2.5 94 chr3L 20081749 intron sNPF-R - chr3L 20081796 intron sNPF-R - chr3L 20081843 intron sNPF-R - chr3L_5_20080001 chr3L_20080001 RAL-85 774 chr3L 20143091 20143116 chr3L 20143169 20143195 6 80 1.5 1.0 1.2 2.7 104 chr3L 20143091 intergenic not near genes chr3L 20143143 intergenic not near genes chr3L 20143195 intergenic not near genes chr3L_6_20140001 chr3L_20140001 RAL-85 775 chr3L 20148286 20148318 chr3L 20148376 20148408 7 90 1.5 3.5 2.5 2.0 122 chr3L 20148286 intergenic not near genes chr3L 20148347 intergenic not near genes chr3L 20148408 intergenic not near genes chr3L_7_20145001 chr3L_20145001 RAL-85 776 chr3L 20156169 20156191 chr3L 20156291 20156313 9 122 3.0 3.0 3.0 2.2 144 chr3L 20156169 intron CG42674 - chr3L 20156241 intron CG42674 - chr3L 20156313 intron CG42674 - chr3L_9_20155001 chr3L_20155001 RAL-85 777 chr3L 20262797 20262829 chr3L 20262909 20262933 18 109 3.5 3.0 3.2 4.3 136 chr3L 20262797 exon rdgC + chr3L 20262865 intron rdgC + chr3L 20262933 intron rdgC + chr3L_18_20260001 chr3L_20260001 RAL-85 778 chr3L 20345611 20345639 chr3L 20345691 20345720 12 81 2.5 2.5 2.5 3.4 109 chr3L 20345611 intergenic Rbbp5 - chr3L 20345666 intergenic Rbbp5 - chr3L 20345720 intergenic Rbbp5 - chr3L_12_20345001 chr3L_20345001 RAL-85 779 chr3L 20431589 20431624 chr3L 20431742 20431777 17 153 4.5 3.0 3.8 3.5 188 chr3L 20431589 exon Las - chr3L 20431683 intron Las - chr3L 20431777 intron Las - chr3L_17_20430001 chr3L_20430001 RAL-85 780 chr3L 20590068 20590097 chr3L 20590602 20590636 412 9 538 1.5 6.5 4.0 1.8 568 chr3L 20590068 intergenic not near genes chr3L 20590352 intergenic not near genes chr3L 20590636 intergenic not near genes chr3L_9_20590001 chr3L_20590001 RAL-85 781 chr3L 21014915 21014947 chr3L 21023396 21023426 Tirant 8 8479 3.5 3.5 3.5 1.8 8511 chr3L 21014915 intron skd - chr3L 21019170 intron skd - chr3L 21023426 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-85 782 chr3L 21082222 21082237 chr3L 21082300 21082315 6 78 1.0 4.5 2.8 1.6 93 chr3L 21082222 intron ko - chr3L 21082268 intron ko - chr3L 21082315 intron ko - chr3L_6_21080001 chr3L_21080001 RAL-85 783 chr3L 21160972 21160993 chr3L 21161068 21161088 5 96 2.5 5.5 4.0 1.0 116 chr3L 21160972 5` UTR Ac78C - chr3L 21161030 intron Ac78C - chr3L 21161088 intron Ac78C - chr3L_5_21160001 chr3L_21160001 RAL-85 784 chr3L 21243747 21243765 chr3L 21251310 21251328 412 6 7560 4.5 4.0 4.2 1.2 7581 chr3L 21243747 intron Eip78C + chr3L 21247538 intron Eip78C + chr3L 21251328 intron Eip78C + chr3L_6_21245001 chr3L_21245001 RAL-85 785 chr3L 21260410 21260438 chr3L 21260523 21260551 12 112 1.5 4.5 3.0 3.0 141 chr3L 21260410 intron Eip78C + chr3L 21260480 intron Eip78C + chr3L 21260551 intron Eip78C + chr3L_12_21260001 chr3L_21260001 RAL-85 786 chr3L 21274218 21274235 chr3L 21274389 21274406 7 171 1.0 5.0 3.0 1.8 188 chr3L 21274218 intron AcCoAS - chr3L 21274312 intron AcCoAS - chr3L 21274406 intron AcCoAS - chr3L_7_21270001 chr3L_21270001 RAL-85 787 chr3L 21301733 21301763 chr3L 21301819 21301849 5 85 3.5 2.5 3.0 1.2 116 chr3L 21301733 5` UTR CR45432 + chr3L 21301791 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301849 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_5_21300001 chr3L_21300001 RAL-85 788 chr3L 21415136 21415165 chr3L 21415219 21415248 8 82 2.0 1.5 1.8 2.9 112 chr3L 21415136 intron rgn + chr3L 21415192 intron rgn + chr3L 21415248 intron rgn + chr3L_8_21415001 chr3L_21415001 RAL-85 789 chr3L 21498835 21498870 chr3L 21500470 21500506 1360 8 1635 1.5 4.5 3.0 2.0 1671 chr3L 21498835 intron Glg1 - chr3L 21499670 intron Glg1 - chr3L 21500506 intron Glg1 - chr3L_8_21495001 chr3L_21495001 RAL-85 790 chr3L 21637325 21637354 chr3L 21637411 21637441 4 87 3.0 2.5 2.8 1.1 116 chr3L 21637325 intron CG32444 + chr3L 21637383 intron CG32444 + chr3L 21637441 intron CG32444 + chr3L_4_21635001 chr3L_21635001 RAL-85 791 chr3L 21699261 21699280 chr3L 21699542 21699561 4 281 2.0 2.0 2.0 1.3 300 chr3L 21699261 intron CG32447 - chr3L 21699411 intron CG32447 - chr3L 21699561 intron CG32447 - chr3L_4_21695001 chr3L_21695001 RAL-85 792 chr3L 21749314 21749336 chr3L 21754474 21754496 Doc 5 5160 5.5 5.5 5.5 0.8 5182 chr3L 21749314 intron Syn1 - chr3L 21751905 intron Syn1 - chr3L 21754496 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-85 793 chr3L 21767049 21767070 chr3L 21767130 21767151 4 81 1.0 2.5 1.8 1.4 102 chr3L 21767049 intron Syn1 - chr3L 21767100 intron Syn1 - chr3L 21767151 intron Syn1 - chr3L_4_21765001 chr3L_21765001 RAL-85 794 chr3L 21776673 21776696 chr3L 21776760 21776783 5 87 1.0 1.5 1.2 2.3 110 chr3L 21776673 intron,intron CG42689 +,CG42552 + chr3L 21776728 intron,intron CG42689 +,CG42552 + chr3L 21776783 intron,intron CG42689 +,CG42552 + chr3L_5_21775001 chr3L_21775001 RAL-85 795 chr3L 21966479 21966506 chr3L 21966562 21966589 4 83 3.5 8.0 5.8 0.6 110 chr3L 21966479 intron CS-2 + chr3L 21966534 intron CS-2 + chr3L 21966589 intron CS-2 + chr3L_4_21965001 chr3L_21965001 RAL-85 796 chr3L 21998498 21998526 chr3L 21998616 21998644 5 118 2.0 3.0 2.5 1.4 146 chr3L 21998498 intergenic not near genes chr3L 21998571 intergenic not near genes chr3L 21998644 intergenic not near genes chr3L_5_21995001 chr3L_21995001 RAL-85 797 chr3L 22010177 22010181 chr3L 22010258 22010270 4 87 3.0 5.0 4.0 0.8 93 chr3L 22010177 intergenic not near genes chr3L 22010224 intergenic not near genes chr3L 22010270 intergenic not near genes chr3L_4_22010001 chr3L_22010001 RAL-85 798 chr3L 22046186 22046214 chr3L 22046289 22046317 6 103 0.0 2.5 1.2 2.7 131 chr3L 22046186 intron Oct-TyrR + chr3L 22046252 intron Oct-TyrR + chr3L 22046317 intron Oct-TyrR + chr3L_6_22045001 chr3L_22045001 RAL-85 799 chr3L 22271132 22271150 chr3L 22271259 22271277 7 127 2.5 1.5 2.0 2.3 145 chr3L 22271132 intron Csp + chr3L 22271204 intron Csp + chr3L 22271277 intron Csp + chr3L_7_22270001 chr3L_22270001 RAL-85 800 chr3L 22328633 22328662 chr3L 22328744 22328773 9 109 2.0 4.5 3.2 2.1 140 chr3L 22328633 intron Ten-m - chr3L 22328703 intron Ten-m - chr3L 22328773 intron Ten-m - chr3L_9_22325001 chr3L_22325001 RAL-85 801 chr3L 22339020 22339051 chr3L 22339471 22339502 5 451 4.5 3.0 3.8 1.0 482 chr3L 22339020 intron Ten-m - chr3L 22339261 intron Ten-m - chr3L 22339502 intron Ten-m - chr3L_5_22335001 chr3L_22335001 RAL-85 802 chr3L 22450265 22450300 chr3L 22450366 22450401 5 101 2.5 4.0 3.2 1.2 136 chr3L 22450265 intergenic not near genes chr3L 22450333 intergenic not near genes chr3L 22450401 intergenic not near genes chr3L_5_22450001 chr3L_22450001 RAL-85 803 chr3L 22477054 22477084 chr3L 22477145 22477175 5 91 0.5 5.0 2.8 1.3 121 chr3L 22477054 intergenic not near genes chr3L 22477114 intergenic not near genes chr3L 22477175 intergenic not near genes chr3L_5_22475001 chr3L_22475001 RAL-85 804 chr3L 22514772 22514800 chr3L 22514939 22514967 6 167 3.0 3.0 3.0 1.5 195 chr3L 22514772 intergenic not near genes chr3L 22514870 intergenic not near genes chr3L 22514967 intergenic not near genes chr3L_6_22510001 chr3L_22510001 RAL-85 805 chr3L 22577624 22577649 chr3L 22582412 22582437 Doc 10 4787 4.5 8.5 6.5 1.3 4813 chr3L 22577624 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_10_22580001 chr3L_22580001 RAL-85 806 chr3L 22617190 22617218 chr3L 22624642 22624670 blood 7 7450 3.0 1.0 2.0 2.3 7480 chr3L 22617190 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624670 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-85 807 chr3L 22639852 22639872 chr3L 22640110 22640130 5 258 7.0 6.5 6.8 0.6 278 chr3L 22639852 intergenic not near genes chr3L 22639991 intergenic not near genes chr3L 22640130 intergenic not near genes chr3L_5_22635001 chr3L_22635001 RAL-85 808 chr3L 22678075 22678111 chr3L 22678167 22678172 21 84 3.5 4.0 3.8 4.4 97 chr3L 22678075 intron CG14457 + chr3L 22678124 intron CG14457 + chr3L 22678172 intron CG14457 + chr3L_21_22675001 chr3L_22675001 RAL-85 809 chr3L 22732468 22732493 chr3L 22732549 22732574 8 81 0.0 4.0 2.0 2.7 106 chr3L 22732468 intron CG11367 + chr3L 22732521 intron CG11367 + chr3L 22732574 intron CG11367 + chr3L_8_22730001 chr3L_22730001 RAL-85 810 chr3L 22848771 22848797 chr3L 22848936 22848962 5 165 1.0 0.5 0.8 2.8 191 chr3L 22848771 intergenic not near genes chr3L 22848866 intergenic not near genes chr3L 22848962 intergenic not near genes chr3L_5_22845001 chr3L_22845001 RAL-85 811 chr3L 22897199 22897226 chr3L 22897282 22897309 14 82 4.0 4.5 4.2 2.7 110 chr3L 22897199 intergenic not near genes chr3L 22897254 intergenic not near genes chr3L 22897309 intergenic not near genes chr3L_14_22895001 chr3L_22895001 RAL-85 812 chr3L 22966427 22966452 chr3L 22966651 22966676 11 223 4.0 3.0 3.5 2.4 249 chr3L 22966427 intergenic not near genes chr3L 22966552 intergenic not near genes chr3L 22966676 intergenic not near genes chr3L_11_22965001 chr3L_22965001 RAL-85 813 chr3L 22989864 22989894 chr3L 22996838 22996868 297 4 6974 2.0 1.5 1.8 1.4 7004 chr3L 22989864 intergenic not near genes chr3L 22993366 intergenic not near genes chr3L 22996868 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-85 814 chr3L 23042224 23042257 chr3L 23048977 23049010 gypsy6 14 6753 4.5 4.5 4.5 2.5 6786 chr3L 23042224 intergenic not near genes chr3L 23045617 intergenic not near genes chr3L 23049010 intergenic not near genes chr3L_14_23045001 chr3L_23045001 RAL-85 815 chr3L 23088290 23088314 chr3L 23088368 23088395 6 81 2.0 1.0 1.5 2.4 105 chr3L 23088290 intergenic not near genes chr3L 23088342 intergenic not near genes chr3L 23088395 intergenic not near genes chr3L_6_23085001 chr3L_23085001 RAL-85 816 chr3L 23182824 23182831 chr3L 23182900 23182907 4 76 7.0 3.5 5.2 0.6 83 chr3L 23182824 intron CG34031 + chr3L 23182866 intron CG34031 + chr3L 23182907 intron CG34031 + chr3L_4_23180001 chr3L_23180001 RAL-85 817 chr3L 23285627 23285659 chr3L 23286307 23286339 6 680 1.0 0.5 0.8 3.3 712 chr3L 23285627 3` UTR nAChRalpha4 + chr3L 23285983 3` UTR nAChRalpha4 + chr3L 23286339 3` UTR nAChRalpha4 + chr3L_6_23285001 chr3L_23285001 RAL-85 818 chr3L 23288276 23288298 chr3L 23288955 23288977 INE-1 7 679 0.5 1.5 1.0 3.5 701 chr3L 23288276 intergenic not near genes chr3L 23288626 intergenic not near genes chr3L 23288977 intergenic not near genes chr3L_7_23285001 chr3L_23285001 RAL-85 819 chr3L 23450102 23450133 chr3L 23450604 23450635 11 502 4.5 4.0 4.2 2.1 533 chr3L 23450102 intergenic not near genes chr3L 23450368 intergenic not near genes chr3L 23450635 intergenic not near genes chr3L_11_23450001 chr3L_23450001 RAL-85 820 chr3L 23875525 23875553 chr3L 23875606 23875613 7 78 2.0 3.0 2.5 2.0 88 chr3L 23875525 intron CG40470 - chr3L 23875569 intron CG40470 - chr3L 23875613 intron CG40470 - chr3L_7_23875001 chr3L_23875001 RAL-85 821 chr3L 24168791 24168797 chr3L 24176119 24176125 ZAM 4 7328 14.5 7.5 11.0 0.3 7334 chr3L 24168791 intron Snap25 + chr3L 24172458 intron Snap25 + chr3L 24176125 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-85 822 chr3L 24168802 24168821 chr3L 24176114 24176147 ZAM 6 7322 6.5 7.0 6.8 0.8 7345 chr3L 24168802 intron Snap25 + chr3L 24172474 intron Snap25 + chr3L 24176147 intron Snap25 + chr3L_6_24170001 chr3L_24170001 RAL-85 823 chr3L 27365400 27365421 chr3L 27365704 27365734 4 310 4.0 1.0 2.5 1.1 334 chr3L 27365400 intron Dbp80 + chr3L 27365567 intron Dbp80 + chr3L 27365734 intron Dbp80 + chr3L_4_27365001 chr3L_27365001 RAL-85 824 chr3L 27390701 27390710 chr3L 27390779 27390789 4 78 29.0 27.0 28.0 0.1 88 chr3L 27390701 intron Dbp80 + chr3L 27390745 intron Dbp80 + chr3L 27390789 intron Dbp80 + chr3L_4_27390001 chr3L_27390001 RAL-85 825 chr3R 2534137 2534155 chr3R 2541706 2541724 6 7569 14.5 13.5 14.0 0.4 7587 chr3R 2534137 intergenic not near genes chr3R 2537930 intergenic not near genes chr3R 2541724 intergenic not near genes chr3R_6_2535001 chr3R_2535001 RAL-85 826 chr3R 2534156 2534164 chr3R 2541701 2541732 12 7565 12.0 13.0 12.5 0.9 7576 chr3R 2534156 intergenic not near genes chr3R 2537944 intergenic not near genes chr3R 2541732 intergenic not near genes chr3R_12_2535001 chr3R_2535001 RAL-85 827 chr3R 4063813 4063829 chr3R 4069093 4069109 5 5278 8.5 6.5 7.5 0.6 5296 chr3R 4063813 intergenic not near genes chr3R 4066461 intergenic not near genes chr3R 4069109 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-85 828 chr3R 4161538 4161561 chr3R 4161615 4161638 6 77 2.5 1.0 1.8 2.1 100 chr3R 4161538 3` UTR CG40198 - chr3R 4161588 3` UTR CG40198 - chr3R 4161638 exon CG40198 - chr3R_6_4160001 chr3R_4160001 RAL-85 829 chr3R 4408410 4408427 chr3R 4412714 4412731 Juan 4 4304 1.0 1.5 1.2 1.8 4321 chr3R 4408410 intron CG32944 - chr3R 4410570 intron CG32944 - chr3R 4412731 intron CG32944 - chr3R_4_4410001 chr3R_4410001 RAL-85 830 chr3R 4534608 4534638 chr3R 4534706 4534736 5 98 1.0 1.0 1.0 2.5 128 chr3R 4534608 intron CG34357 - chr3R 4534672 intron CG34357 - chr3R 4534736 intron CG34357 - chr3R_5_4530001 chr3R_4530001 RAL-85 831 chr3R 4609558 4609581 chr3R 4610721 4610745 1360 12 1164 1.5 1.5 1.5 4.8 1187 chr3R 4609558 intergenic not near genes chr3R 4610152 intergenic not near genes chr3R 4610745 intergenic not near genes chr3R_12_4610001 chr3R_4610001 RAL-85 832 chr3R 4683179 4683207 chr3R 4684938 4684966 S-element 6 1759 2.0 4.0 3.0 1.5 1787 chr3R 4683179 intron CG43427 + chr3R 4684072 intron CG43427 + chr3R 4684966 intron CG43427 + chr3R_6_4680001 chr3R_4680001 RAL-85 833 chr3R 4753242 4753266 chr3R 4757545 4757569 F-element 9 4303 4.0 7.0 5.5 1.4 4327 chr3R 4753242 intron,intron atms +,CG44098 - chr3R 4755406 intron,intron atms +,CG44098 - chr3R 4757569 intron,exon atms +,CG44098 - chr3R_9_4755001 chr3R_4755001 RAL-85 834 chr3R 4769158 4769186 chr3R 4769236 4769264 7 78 2.0 1.5 1.8 2.5 106 chr3R 4769158 intron,intron atms +,CG44098 - chr3R 4769211 intron,intron atms +,CG44098 - chr3R 4769264 intron,intron atms +,CG44098 - chr3R_7_4765001 chr3R_4765001 RAL-85 835 chr3R 4784518 4784549 chr3R 4791391 4791422 6 6874 27.0 36.0 31.5 0.2 6904 chr3R 4784518 exon CG17387 - chr3R 4787970 exon ctrip - chr3R 4791422 exon ctrip - chr3R_6_4785001 chr3R_4785001 RAL-85 836 chr3R 4851829 4851839 chr3R 4858389 4858399 5 6560 9.0 25.5 17.2 0.3 6570 chr3R 4851829 intergenic not near genes chr3R 4855114 intron opa + chr3R 4858399 intron opa + chr3R_5_4855001 chr3R_4855001 RAL-85 837 chr3R 4887479 4887508 chr3R 4894856 4894885 rover 6 7376 2.0 3.5 2.8 1.6 7406 chr3R 4887479 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894885 intergenic not near genes chr3R_6_4890001 chr3R_4890001 RAL-85 838 chr3R 4922342 4922361 chr3R 4922421 4922440 9 79 5.0 3.0 4.0 1.8 98 chr3R 4922342 intron Cdep + chr3R 4922391 intron Cdep + chr3R 4922440 intron Cdep + chr3R_9_4920001 chr3R_4920001 RAL-85 839 chr3R 5045845 5045868 chr3R 5052947 5052970 HMS-Beagle 5 7101 3.0 1.0 2.0 1.7 7125 chr3R 5045845 intron CR43635 - chr3R 5049408 intergenic not near genes chr3R 5052970 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-85 840 chr3R 5191375 5191398 chr3R 5191651 5191674 11 277 29.0 24.5 26.8 0.4 299 chr3R 5191375 intron cno - chr3R 5191524 intron cno - chr3R 5191674 intron cno - chr3R_11_5190001 chr3R_5190001 RAL-85 841 chr3R 5278089 5278123 chr3R 5278170 5278204 12 81 3.0 3.0 3.0 3.0 115 chr3R 5278089 intron mtd - chr3R 5278146 intron mtd - chr3R 5278204 intron mtd - chr3R_12_5275001 chr3R_5275001 RAL-85 842 chr3R 5338396 5338425 chr3R 5343573 5343600 Rt1c 8 5177 3.0 6.0 4.5 1.5 5204 chr3R 5338396 intron mtd - chr3R 5340998 intron mtd - chr3R 5343600 intron mtd - chr3R_8_5340001 chr3R_5340001 RAL-85 843 chr3R 5367146 5367178 chr3R 5367272 5367289 6 115 1.0 2.5 1.8 2.1 143 chr3R 5367146 intron Cerk - chr3R 5367218 intron Cerk - chr3R 5367289 intron Cerk - chr3R_6_5365001 chr3R_5365001 RAL-85 844 chr3R 5385985 5386007 chr3R 5386156 5386178 7 171 4.0 6.0 5.0 1.2 193 chr3R 5385985 intron kkv - chr3R 5386082 intron kkv - chr3R 5386178 intron kkv - chr3R_7_5385001 chr3R_5385001 RAL-85 845 chr3R 5445977 5445994 chr3R 5452437 5452454 Burdock 4 6460 0.0 3.0 1.5 1.6 6477 chr3R 5445977 intron CG14669 + chr3R 5449216 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_4_5445001 chr3R_5445001 RAL-85 846 chr3R 5746016 5746045 chr3R 5746257 5746286 pogo 5 241 4.0 2.0 3.0 1.2 270 chr3R 5746016 3` UTR Madm + chr3R 5746151 3` UTR Madm + chr3R 5746286 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-85 847 chr3R 5772390 5772406 chr3R 5772548 5772564 4 158 1.5 5.5 3.5 0.9 174 chr3R 5772390 intron CG2082 - chr3R 5772477 intron CG2082 - chr3R 5772564 intron CG2082 - chr3R_4_5770001 chr3R_5770001 RAL-85 848 chr3R 5809112 5809139 chr3R 5809353 5809378 pogo 10 240 3.5 1.5 2.5 2.9 266 chr3R 5809112 3` UTR CG11000 + chr3R 5809245 3` UTR CG11000 + chr3R 5809378 3` UTR CG11000 + chr3R_10_5805001 chr3R_5805001 RAL-85 849 chr3R 5822378 5822412 chr3R 5823545 5823579 1360 5 1167 1.5 3.5 2.5 1.4 1201 chr3R 5822378 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823579 3` UTR CG2023 - chr3R_5_5820001 chr3R_5820001 RAL-85 850 chr3R 5840821 5840853 chr3R 5840910 5840942 11 89 3.0 1.0 2.0 3.7 121 chr3R 5840821 intergenic CG1213 + chr3R 5840882 intergenic CG1213 + chr3R 5840942 intergenic CG1213 + chr3R_11_5840001 chr3R_5840001 RAL-85 851 chr3R 5927573 5927590 chr3R 5927799 5927830 pogo 6 238 1.5 3.5 2.5 1.7 257 chr3R 5927573 intron CG34113 - chr3R 5927702 intron CG34113 - chr3R 5927830 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-85 852 chr3R 5931849 5931883 chr3R 5931924 5931959 12 75 2.5 2.0 2.2 3.8 110 chr3R 5931849 intron CG34113 - chr3R 5931904 intron CG34113 - chr3R 5931959 intron CG34113 - chr3R_12_5930001 chr3R_5930001 RAL-85 853 chr3R 5968177 5968197 chr3R 5968257 5968277 8 80 3.5 2.5 3.0 2.0 100 chr3R 5968177 intergenic not near genes chr3R 5968227 intergenic not near genes chr3R 5968277 intergenic not near genes chr3R_8_5965001 chr3R_5965001 RAL-85 854 chr3R 6015963 6015995 chr3R 6024444 6024476 Tirant 12 8480 4.5 4.0 4.2 2.3 8513 chr3R 6015963 intergenic not near genes chr3R 6020220 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_12_6020001 chr3R_6020001 RAL-85 855 chr3R 6033334 6033359 chr3R 6033414 6033441 11 80 1.5 3.0 2.2 3.4 107 chr3R 6033334 intergenic not near genes chr3R 6033388 intergenic not near genes chr3R 6033441 intergenic not near genes chr3R_11_6030001 chr3R_6030001 RAL-85 856 chr3R 6035143 6035179 chr3R 6035223 6035259 18 79 4.5 2.5 3.5 4.0 116 chr3R 6035143 intergenic not near genes chr3R 6035201 intergenic not near genes chr3R 6035259 intergenic not near genes chr3R_18_6035001 chr3R_6035001 RAL-85 857 chr3R 6141915 6141951 chr3R 6141992 6142028 21 76 2.5 4.5 3.5 4.7 113 chr3R 6141915 intergenic not near genes chr3R 6141972 intergenic not near genes chr3R 6142028 intergenic not near genes chr3R_21_6140001 chr3R_6140001 RAL-85 858 chr3R 6158510 6158529 chr3R 6167093 6167112 Tirant 5 8582 5.5 4.0 4.8 0.9 8602 chr3R 6158510 intergenic not near genes chr3R 6162811 intergenic not near genes chr3R 6167112 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-85 859 chr3R 6191167 6191193 chr3R 6191247 6191273 5 80 1.0 1.5 1.2 2.3 106 chr3R 6191167 intron NPFR + chr3R 6191220 intron NPFR + chr3R 6191273 intron NPFR + chr3R_5_6190001 chr3R_6190001 RAL-85 860 chr3R 6192640 6192664 chr3R 6192725 6192749 10 85 2.5 2.0 2.2 3.1 109 chr3R 6192640 exon NPFR + chr3R 6192694 intron NPFR + chr3R 6192749 intron NPFR + chr3R_10_6190001 chr3R_6190001 RAL-85 861 chr3R 6206281 6206317 chr3R 6206498 6206534 BS 9 217 5.5 3.5 4.5 1.6 253 chr3R 6206281 exon Osi24 + chr3R 6206408 intron Osi24 + chr3R 6206534 intron Osi24 + chr3R_9_6205001 chr3R_6205001 RAL-85 862 chr3R 6316775 6316812 chr3R 6316868 6316905 13 93 0.5 4.0 2.2 4.1 130 chr3R 6316775 intron Osi17 + chr3R 6316840 intron Osi17 + chr3R 6316905 intron Osi17 + chr3R_13_6315001 chr3R_6315001 RAL-85 863 chr3R 6412915 6412933 chr3R 6412991 6413010 5 75 2.5 3.5 3.0 1.2 95 chr3R 6412915 intron gpp + chr3R 6412962 intron gpp + chr3R 6413010 intron gpp + chr3R_5_6410001 chr3R_6410001 RAL-85 864 chr3R 6639909 6639928 chr3R 6639987 6640006 7 78 2.5 0.0 1.2 3.2 97 chr3R 6639909 intergenic not near genes chr3R 6639958 intergenic not near genes chr3R 6640006 intergenic not near genes chr3R_7_6635001 chr3R_6635001 RAL-85 865 chr3R 6737503 6737530 chr3R 6739290 6739317 Doc 9 1785 3.0 3.5 3.2 2.1 1814 chr3R 6737503 intron pb - chr3R 6738410 intron pb - chr3R 6739317 intron pb - chr3R_9_6735001 chr3R_6735001 RAL-85 866 chr3R 6804201 6804227 chr3R 6804310 6804330 5 108 1.0 2.5 1.8 1.8 129 chr3R 6804201 intergenic not near genes chr3R 6804266 intergenic not near genes chr3R 6804330 intergenic not near genes chr3R_5_6800001 chr3R_6800001 RAL-85 867 chr3R 6918188 6918213 chr3R 6918289 6918308 4 106 1.5 1.5 1.5 1.6 120 chr3R 6918188 intron Antp - chr3R 6918248 intron Antp - chr3R 6918308 intron Antp - chr3R_4_6915001 chr3R_6915001 RAL-85 868 chr3R 6961186 6961203 chr3R 6961265 6961282 5 79 2.5 2.0 2.2 1.6 96 chr3R 6961186 intron Antp - chr3R 6961234 intron Antp - chr3R 6961282 intron Antp - chr3R_5_6960001 chr3R_6960001 RAL-85 869 chr3R 7026870 7026891 chr3R 7026940 7026977 7 84 2.5 2.0 2.2 2.2 107 chr3R 7026870 intergenic not near genes chr3R 7026924 intergenic not near genes chr3R 7026977 intergenic not near genes chr3R_7_7025001 chr3R_7025001 RAL-85 870 chr3R 7373004 7373022 chr3R 7373074 7373081 4 71 3.5 1.5 2.5 1.1 77 chr3R 7373004 intergenic not near genes chr3R 7373042 intergenic not near genes chr3R 7373081 intergenic not near genes chr3R_4_7370001 chr3R_7370001 RAL-85 871 chr3R 7385589 7385611 chr3R 7385658 7385687 10 73 4.0 6.5 5.2 1.6 98 chr3R 7385589 intergenic not near genes chr3R 7385638 intergenic not near genes chr3R 7385687 intergenic not near genes chr3R_10_7385001 chr3R_7385001 RAL-85 872 chr3R 7447995 7448012 chr3R 7448073 7448090 5 78 3.0 2.0 2.5 1.4 95 chr3R 7447995 intergenic not near genes chr3R 7448042 intergenic not near genes chr3R 7448090 intergenic not near genes chr3R_5_7445001 chr3R_7445001 RAL-85 873 chr3R 7677936 7677943 chr3R 7678049 7678056 4 113 0.0 1.0 0.5 2.7 120 chr3R 7677936 intron Nlg1 + chr3R 7677996 intron Nlg1 + chr3R 7678056 intron Nlg1 + chr3R_4_7675001 chr3R_7675001 RAL-85 874 chr3R 7746467 7746500 chr3R 7746562 7746595 10 95 3.0 3.0 3.0 2.5 128 chr3R 7746467 intergenic not near genes chr3R 7746531 intergenic not near genes chr3R 7746595 intergenic not near genes chr3R_10_7745001 chr3R_7745001 RAL-85 875 chr3R 7857640 7857673 chr3R 7857723 7857756 5 82 1.5 1.5 1.5 2.0 116 chr3R 7857640 3` UTR CG17816 - chr3R 7857698 3` UTR CG17816 - chr3R 7857756 3` UTR CG17816 - chr3R_5_7855001 chr3R_7855001 RAL-85 876 chr3R 7883146 7883158 chr3R 7883223 7883236 4 78 1.0 1.0 1.0 2.0 90 chr3R 7883146 intron CG17816 - chr3R 7883191 intron CG17816 - chr3R 7883236 intron CG17816 - chr3R_4_7880001 chr3R_7880001 RAL-85 877 chr3R 7948446 7948467 chr3R 7948522 7948544 6 73 2.0 1.0 1.5 2.4 98 chr3R 7948446 intron dsx - chr3R 7948495 intron dsx - chr3R 7948544 intron dsx - chr3R_6_7945001 chr3R_7945001 RAL-85 878 chr3R 8090284 8090304 chr3R 8090461 8090481 4 177 1.5 2.0 1.8 1.4 197 chr3R 8090284 5` UTR CR44330 + chr3R 8090382 intergenic CR44330 + chr3R 8090481 intergenic CR44330 + chr3R_4_8090001 chr3R_8090001 RAL-85 879 chr3R 8101775 8101793 chr3R 8104859 8104877 G2 6 3084 2.5 4.0 3.2 1.4 3102 chr3R 8101775 exon CG7900 + chr3R 8103326 intron CG7900 + chr3R 8104877 3` UTR CG7900 + chr3R_6_8100001 chr3R_8100001 RAL-85 880 chr3R 8207563 8207582 chr3R 8208398 8208427 F-element 7 841 3.5 2.0 2.8 1.8 864 chr3R 8207563 intergenic not near genes chr3R 8207995 intergenic not near genes chr3R 8208427 intergenic not near genes chr3R_7_8205001 chr3R_8205001 RAL-85 881 chr3R 8339241 8339247 chr3R 21907534 21907536 10 13568289 11.5 16.0 13.8 0.7 13568295 chr3R 8339241 intergenic not near genes chr3R 15123388 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 RAL-85 882 chr3R 8403012 8403040 chr3R 8412177 8412206 roo 19 9166 2.5 6.5 4.5 3.5 9194 chr3R 8403012 intron CG45263 - chr3R 8407609 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_19_8405001 chr3R_8405001 RAL-85 883 chr3R 8460261 8460269 chr3R 8460334 8460346 4 75 5.5 7.0 6.2 0.6 85 chr3R 8460261 intron CG45263 - chr3R 8460304 intron CG45263 - chr3R 8460346 intron CG45263 - chr3R_4_8460001 chr3R_8460001 RAL-85 884 chr3R 8538347 8538360 chr3R 8538430 8538443 4 83 4.0 5.5 4.8 0.7 96 chr3R 8538347 intergenic not near genes chr3R 8538395 intergenic not near genes chr3R 8538443 intergenic not near genes chr3R_4_8535001 chr3R_8535001 RAL-85 885 chr3R 8570481 8570511 chr3R 8575117 8575146 HMS-Beagle 8 4636 3.5 2.0 2.8 2.1 4665 chr3R 8570481 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575146 intergenic not near genes chr3R_8_8570001 chr3R_8570001 RAL-85 886 chr3R 8575926 8575958 chr3R 8576009 8576039 12 83 2.5 5.0 3.8 2.5 113 chr3R 8575926 intergenic not near genes chr3R 8575982 intergenic not near genes chr3R 8576039 intergenic not near genes chr3R_12_8575001 chr3R_8575001 RAL-85 887 chr3R 8601771 8601800 chr3R 8610924 8610953 roo 9 9153 3.5 3.5 3.5 2.0 9182 chr3R 8601771 intron 5-HT2B + chr3R 8606362 intron 5-HT2B + chr3R 8610953 intron 5-HT2B + chr3R_9_8605001 chr3R_8605001 RAL-85 888 chr3R 8614792 8614816 chr3R 8614995 8615019 13 202 0.0 3.5 1.8 4.6 227 chr3R 8614792 intron 5-HT2B + chr3R 8614906 intron 5-HT2B + chr3R 8615019 intron 5-HT2B + chr3R_13_8610001 chr3R_8610001 RAL-85 889 chr3R 8621541 8621551 chr3R 8621618 8621628 6 77 5.5 4.0 4.8 1.0 87 chr3R 8621541 intron 5-HT2B + chr3R 8621584 intron 5-HT2B + chr3R 8621628 intron 5-HT2B + chr3R_6_8620001 chr3R_8620001 RAL-85 890 chr3R 8636933 8636964 chr3R 8637236 8637267 13 303 1.5 2.5 2.0 4.3 334 chr3R 8636933 intergenic not near genes chr3R 8637100 intergenic not near genes chr3R 8637267 intergenic not near genes chr3R_13_8635001 chr3R_8635001 RAL-85 891 chr3R 8707361 8707387 chr3R 8709802 8709828 jockey 11 2440 1.5 4.5 3.0 2.8 2467 chr3R 8707361 intergenic not near genes chr3R 8708594 intergenic not near genes chr3R 8709828 intergenic not near genes chr3R_11_8705001 chr3R_8705001 RAL-85 892 chr3R 8745751 8745780 chr3R 8745861 8745891 5 111 0.0 0.0 0.0 5.0 140 chr3R 8745751 intron CG9801 - chr3R 8745821 intron CG9801 - chr3R 8745891 intron CG9801 - chr3R_5_8745001 chr3R_8745001 RAL-85 893 chr3R 9171925 9171947 chr3R 9172290 9172312 4 365 1.5 1.5 1.5 1.6 387 chr3R 9171925 intron pum - chr3R 9172118 intron pum - chr3R 9172312 intron pum - chr3R_4_9170001 chr3R_9170001 RAL-85 894 chr3R 9204254 9204278 chr3R 9204341 9204365 9 85 7.0 5.0 6.0 1.3 111 chr3R 9204254 intron pum - chr3R 9204310 intron pum - chr3R 9204365 intron pum - chr3R_9_9200001 chr3R_9200001 RAL-85 895 chr3R 9278779 9278810 chr3R 9284039 9284067 Rt1a 9 5258 0.0 3.0 1.5 3.6 5288 chr3R 9278779 intergenic not near genes chr3R 9281423 intergenic not near genes chr3R 9284067 intergenic not near genes chr3R_9_9280001 chr3R_9280001 RAL-85 896 chr3R 9300041 9300071 chr3R 9300125 9300155 4 84 2.0 1.0 1.5 1.6 114 chr3R 9300041 intron CG8861 - chr3R 9300098 intron CG8861 - chr3R 9300155 intron CG8861 - chr3R_4_9300001 chr3R_9300001 RAL-85 897 chr3R 9304527 9304537 chr3R 9311814 9311824 Stalker4 7 7287 7.0 1.0 4.0 1.4 7297 chr3R 9304527 intron CG8861 - chr3R 9308176 intron CG8861 - chr3R 9311824 intron CG8861 - chr3R_7_9305001 chr3R_9305001 RAL-85 898 chr3R 9319575 9319609 chr3R 9320010 9320044 jockey 5 435 0.5 2.0 1.2 2.3 469 chr3R 9319575 intron CG8861 - chr3R 9319810 intron CG8861 - chr3R 9320044 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-85 899 chr3R 9382823 9382836 chr3R 9382948 9382961 4 125 3.0 3.0 3.0 1.0 138 chr3R 9382823 intron FER - chr3R 9382892 intron FER - chr3R 9382961 intron FER - chr3R_4_9380001 chr3R_9380001 RAL-85 900 chr3R 9601478 9601493 chr3R 9601595 9601611 4 118 1.5 0.5 1.0 2.0 133 chr3R 9601478 intron CG8312 + chr3R 9601544 intron CG8312 + chr3R 9601611 intron CG8312 + chr3R_4_9600001 chr3R_9600001 RAL-85 901 chr3R 9702259 9702289 chr3R 9702335 9702361 8 75 2.5 4.0 3.2 1.9 102 chr3R 9702259 intron Unc-115a - chr3R 9702310 intron Unc-115a - chr3R 9702361 intron Unc-115a - chr3R_8_9700001 chr3R_9700001 RAL-85 902 chr3R 9891469 9891491 chr3R 9891608 9891631 4 139 0.0 0.0 0.0 4.0 162 chr3R 9891469 intron Glut4EF + chr3R 9891550 intron Glut4EF + chr3R 9891631 intron Glut4EF + chr3R_4_9890001 chr3R_9890001 RAL-85 903 chr3R 9898787 9898796 chr3R 9898879 9898884 4 91 4.5 2.0 3.2 1.0 97 chr3R 9898787 intron Glut4EF + chr3R 9898836 intron Glut4EF + chr3R 9898884 intron Glut4EF + chr3R_4_9895001 chr3R_9895001 RAL-85 904 chr3R 9936873 9936912 chr3R 9936949 9936988 16 75 3.0 8.0 5.5 2.5 115 chr3R 9936873 intron Glut4EF + chr3R 9936930 intron Glut4EF + chr3R 9936988 intron Glut4EF + chr3R_16_9935001 chr3R_9935001 RAL-85 905 chr3R 9937599 9937614 chr3R 9937675 9937693 10 78 7.5 4.5 6.0 1.4 94 chr3R 9937599 intron Glut4EF + chr3R 9937646 intron Glut4EF + chr3R 9937693 intron Glut4EF + chr3R_10_9935001 chr3R_9935001 RAL-85 906 chr3R 10282056 10282086 chr3R 10282167 10282197 13 111 3.5 1.0 2.2 4.1 141 chr3R 10282056 intron CG43143 + chr3R 10282126 intron CG43143 + chr3R 10282197 intron CG43143 + chr3R_13_10280001 chr3R_10280001 RAL-85 907 chr3R 10531871 10531900 chr3R 10531952 10531981 7 81 1.5 2.0 1.8 2.5 110 chr3R 10531871 intron hth - chr3R 10531926 intron hth - chr3R 10531981 intron hth - chr3R_7_10530001 chr3R_10530001 RAL-85 908 chr3R 10632276 10632288 chr3R 10633892 10633904 5 1616 6.0 9.5 7.8 0.6 1628 chr3R 10632276 intergenic not near genes chr3R 10633090 intergenic not near genes chr3R 10633904 intergenic not near genes chr3R_5_10630001 chr3R_10630001 RAL-85 909 chr3R 10646105 10646139 chr3R 10646256 10646290 8 151 0.5 1.5 1.0 4.0 185 chr3R 10646105 intergenic CR44018 + chr3R 10646198 intergenic CR44018 + chr3R 10646290 intergenic not near genes chr3R_8_10645001 chr3R_10645001 RAL-85 910 chr3R 10723764 10723794 chr3R 10723855 10723886 9 92 2.5 1.5 2.0 3.0 122 chr3R 10723764 intergenic not near genes chr3R 10723825 intergenic not near genes chr3R 10723886 intergenic not near genes chr3R_9_10720001 chr3R_10720001 RAL-85 911 chr3R 10727642 10727677 chr3R 10727722 10727757 13 80 5.0 4.0 4.5 2.4 115 chr3R 10727642 intergenic not near genes chr3R 10727700 intergenic not near genes chr3R 10727757 intergenic not near genes chr3R_13_10725001 chr3R_10725001 RAL-85 912 chr3R 10745424 10745455 chr3R 10745511 10745542 13 87 2.0 3.5 2.8 3.4 118 chr3R 10745424 intron TkR86C - chr3R 10745483 intron TkR86C - chr3R 10745542 intron TkR86C - chr3R_13_10745001 chr3R_10745001 RAL-85 913 chr3R 10868601 10868623 chr3R 10868672 10868674 8 71 3.0 3.0 3.0 2.0 73 chr3R 10868601 5` UTR SelR - chr3R 10868638 5` UTR SelR - chr3R 10868674 intergenic SelR -,Tsp86D + chr3R_8_10865001 chr3R_10865001 RAL-85 914 chr3R 10904916 10904936 chr3R 10905120 10905139 4 204 1.5 4.5 3.0 1.0 223 chr3R 10904916 intergenic not near genes chr3R 10905028 intergenic not near genes chr3R 10905139 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-85 915 chr3R 10906832 10906856 chr3R 10906908 10906931 6 75 1.5 2.5 2.0 2.0 99 chr3R 10906832 intergenic not near genes chr3R 10906882 intergenic not near genes chr3R 10906931 intergenic not near genes chr3R_6_10905001 chr3R_10905001 RAL-85 916 chr3R 10919684 10919716 chr3R 10919762 10919794 12 78 4.0 0.5 2.2 3.8 110 chr3R 10919684 intergenic not near genes chr3R 10919739 intergenic not near genes chr3R 10919794 intergenic not near genes chr3R_12_10915001 chr3R_10915001 RAL-85 917 chr3R 10957863 10957884 chr3R 10963252 10963272 Rt1c 5 5389 4.0 6.0 5.0 0.8 5409 chr3R 10957863 intergenic not near genes chr3R 10960568 intergenic not near genes chr3R 10963272 intergenic not near genes chr3R_5_10960001 chr3R_10960001 RAL-85 918 chr3R 10971488 10971513 chr3R 10971579 10971604 7 91 1.5 3.5 2.5 2.0 116 chr3R 10971488 intergenic not near genes chr3R 10971546 intergenic not near genes chr3R 10971604 intergenic not near genes chr3R_7_10970001 chr3R_10970001 RAL-85 919 chr3R 11043093 11043122 chr3R 11043199 11043228 5 106 1.0 3.0 2.0 1.7 135 chr3R 11043093 intron CG34114 + chr3R 11043160 intron CG34114 + chr3R 11043228 intron CG34114 + chr3R_5_11040001 chr3R_11040001 RAL-85 920 chr3R 11087434 11087467 chr3R 11087510 11087543 16 75 0.5 2.0 1.2 7.3 109 chr3R 11087434 intergenic not near genes chr3R 11087488 intergenic not near genes chr3R 11087543 intergenic not near genes chr3R_16_11085001 chr3R_11085001 RAL-85 921 chr3R 11099661 11099681 chr3R 11099793 11099813 5 131 4.0 3.5 3.8 1.0 152 chr3R 11099661 intergenic not near genes chr3R 11099737 intergenic not near genes chr3R 11099813 intergenic not near genes chr3R_5_11095001 chr3R_11095001 RAL-85 922 chr3R 11102329 11102355 chr3R 11102410 11102436 13 81 4.0 5.5 4.8 2.2 107 chr3R 11102329 intergenic not near genes chr3R 11102382 intergenic not near genes chr3R 11102436 intergenic not near genes chr3R_13_11100001 chr3R_11100001 RAL-85 923 chr3R 11151127 11151153 chr3R 11151317 11151348 8 192 1.0 2.0 1.5 3.2 221 chr3R 11151127 3` UTR Ugt86Di - chr3R 11151238 3` UTR Ugt86Di - chr3R 11151348 3` UTR Ugt86Di - chr3R_8_11150001 chr3R_11150001 RAL-85 924 chr3R 11197984 11198012 chr3R 11198083 11198111 5 99 4.5 3.0 3.8 1.0 127 chr3R 11197984 intron cu + chr3R 11198048 intron cu + chr3R 11198111 intron cu + chr3R_5_11195001 chr3R_11195001 RAL-85 925 chr3R 11220287 11220312 chr3R 11220406 11220431 4 119 1.0 2.0 1.5 1.6 144 chr3R 11220287 3` UTR CG6693 - chr3R 11220359 3` UTR CG6693 - chr3R 11220431 3` UTR CG6693 - chr3R_4_11220001 chr3R_11220001 RAL-85 926 chr3R 11285906 11285933 chr3R 11286092 11286119 7 186 1.0 1.0 1.0 3.5 213 chr3R 11285906 intron CR31386 - chr3R 11286012 intron CR31386 - chr3R 11286119 intron CR31386 - chr3R_7_11285001 chr3R_11285001 RAL-85 927 chr3R 11303084 11303093 chr3R 11303164 11303173 4 80 8.0 2.5 5.2 0.6 89 chr3R 11303084 intron CR31386 - chr3R 11303128 intron CR31386 - chr3R 11303173 intron CR31386 - chr3R_4_11300001 chr3R_11300001 RAL-85 928 chr3R 11303097 11303111 chr3R 11303161 11303191 7 77 4.5 1.5 3.0 1.8 94 chr3R 11303097 intron CR31386 - chr3R 11303144 intron CR31386 - chr3R 11303191 intron CR31386 - chr3R_7_11300001 chr3R_11300001 RAL-85 929 chr3R 11342543 11342574 chr3R 11342619 11342650 5 76 1.5 2.5 2.0 1.7 107 chr3R 11342543 intron pros + chr3R 11342596 intron pros + chr3R 11342650 intron pros + chr3R_5_11340001 chr3R_11340001 RAL-85 930 chr3R 11417645 11417675 chr3R 11422209 11422239 12 4565 38.0 30.5 34.2 0.3 4594 chr3R 11417645 exon CG6723 - chr3R 11419942 exon ninaG - chr3R 11422239 5` UTR CG5270 + chr3R_12_11415001 chr3R_11415001 RAL-85 931 chr3R 11443682 11443712 chr3R 11443773 11443804 9 91 1.5 3.0 2.2 2.8 122 chr3R 11443682 intron,intron sals -,CG17230 + chr3R 11443743 intron,intron sals -,CG17230 + chr3R 11443804 intron,intron sals -,CG17230 + chr3R_9_11440001 chr3R_11440001 RAL-85 932 chr3R 11461270 11461303 chr3R 11461350 11461383 7 80 1.5 1.5 1.5 2.8 113 chr3R 11461270 intron CG17230 + chr3R 11461326 intron CG17230 + chr3R 11461383 intron CG17230 + chr3R_7_11460001 chr3R_11460001 RAL-85 933 chr3R 11481704 11481719 chr3R 11481802 11481817 9 97 3.0 2.5 2.8 2.4 113 chr3R 11481704 intergenic not near genes chr3R 11481760 intergenic not near genes chr3R 11481817 intergenic not near genes chr3R_9_11480001 chr3R_11480001 RAL-85 934 chr3R 11734162 11734187 chr3R 11734281 11734306 8 116 3.5 2.5 3.0 2.0 144 chr3R 11734162 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734306 intergenic not near genes chr3R_8_11730001 chr3R_11730001 RAL-85 935 chr3R 11740434 11740444 chr3R 11743541 11743573 20 3108 25.5 53.0 39.2 0.5 3139 chr3R 11740434 exon Blm - chr3R 11742004 5` UTR CG14722 + chr3R 11743573 exon CG14722 + chr3R_20_11740001 chr3R_11740001 RAL-85 936 chr3R 11841061 11841097 chr3R 11846252 11846288 BS 6 5191 2.5 2.0 2.2 1.9 5227 chr3R 11841061 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846288 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-85 937 chr3R 11853440 11853470 chr3R 11853589 11853617 4 147 0.5 3.0 1.8 1.4 177 chr3R 11853440 intron CG6959 - chr3R 11853528 intron CG6959 - chr3R 11853617 intron CG6959 - chr3R_4_11850001 chr3R_11850001 RAL-85 938 chr3R 11853770 11853802 chr3R 11853874 11853907 6 105 0.5 2.0 1.2 2.7 137 chr3R 11853770 intron CG6959 - chr3R 11853838 intron CG6959 - chr3R 11853907 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-85 939 chr3R 11909363 11909395 chr3R 11909439 11909475 9 74 3.5 3.5 3.5 2.0 112 chr3R 11909363 intron Cad87A - chr3R 11909419 intron Cad87A - chr3R 11909475 intron Cad87A - chr3R_9_11905001 chr3R_11905001 RAL-85 940 chr3R 12080873 12080898 chr3R 12080949 12080976 6 78 2.5 4.0 3.2 1.4 103 chr3R 12080873 intron CG14741 - chr3R 12080924 intron CG14741 - chr3R 12080976 intron CG14741 - chr3R_6_12080001 chr3R_12080001 RAL-85 941 chr3R 12097249 12097273 chr3R 12097353 12097377 7 104 1.5 4.5 3.0 1.8 128 chr3R 12097249 intron dpr17 + chr3R 12097313 intron dpr17 + chr3R 12097377 intron dpr17 + chr3R_7_12095001 chr3R_12095001 RAL-85 942 chr3R 12102871 12102880 chr3R 12102972 12102981 4 101 4.0 7.0 5.5 0.6 110 chr3R 12102871 intron dpr17 + chr3R 12102926 intron dpr17 + chr3R 12102981 intron dpr17 + chr3R_4_12100001 chr3R_12100001 RAL-85 943 chr3R 12111893 12111914 chr3R 12111969 12111990 8 76 1.0 1.5 1.2 3.6 97 chr3R 12111893 intergenic dpr17 + chr3R 12111942 intergenic not near genes chr3R 12111990 intergenic not near genes chr3R_8_12110001 chr3R_12110001 RAL-85 944 chr3R 12175018 12175040 chr3R 12175383 12175399 4 364 3.0 2.0 2.5 1.1 381 chr3R 12175018 intergenic not near genes chr3R 12175208 intergenic not near genes chr3R 12175399 intergenic not near genes chr3R_4_12175001 chr3R_12175001 RAL-85 945 chr3R 12202305 12202319 chr3R 12202414 12202428 7 109 0.0 6.5 3.2 1.7 123 chr3R 12202305 intergenic not near genes chr3R 12202366 intergenic not near genes chr3R 12202428 intergenic not near genes chr3R_7_12200001 chr3R_12200001 RAL-85 946 chr3R 12321040 12321073 chr3R 12321128 12321161 11 88 1.5 3.0 2.2 3.4 121 chr3R 12321040 intergenic not near genes chr3R 12321100 intergenic not near genes chr3R 12321161 intergenic not near genes chr3R_11_12320001 chr3R_12320001 RAL-85 947 chr3R 12364730 12364751 chr3R 12364890 12364911 9 160 2.0 5.0 3.5 2.0 181 chr3R 12364730 intergenic GstD10 -,Tim17a1 - chr3R 12364820 3` UTR GstD10 - chr3R 12364911 3` UTR GstD10 - chr3R_9_12360001 chr3R_12360001 RAL-85 948 chr3R 12602395 12602418 chr3R 12602473 12602496 8 77 4.5 4.5 4.5 1.5 101 chr3R 12602395 intergenic not near genes chr3R 12602446 intergenic not near genes chr3R 12602496 intergenic not near genes chr3R_8_12600001 chr3R_12600001 RAL-85 949 chr3R 12706466 12706469 chr3R 12715778 12715781 4 9312 35.5 22.5 29.0 0.1 9315 chr3R 12706466 exon mus308 - chr3R 12711124 exon mus308 - chr3R 12715781 intron Men - chr3R_4_12710001 chr3R_12710001 RAL-85 950 chr3R 12758124 12758155 chr3R 12758218 12758249 6 94 1.0 2.0 1.5 2.4 125 chr3R 12758124 intron beat-Vc - chr3R 12758186 intron beat-Vc - chr3R 12758249 intron beat-Vc - chr3R_6_12755001 chr3R_12755001 RAL-85 951 chr3R 12876952 12876978 chr3R 12877035 12877061 6 83 2.5 0.5 1.5 2.4 109 chr3R 12876952 intergenic not near genes chr3R 12877006 intergenic not near genes chr3R 12877061 intergenic not near genes chr3R_6_12875001 chr3R_12875001 RAL-85 952 chr3R 12920151 12920178 chr3R 12925354 12925381 copia 5 5203 3.0 3.0 3.0 1.2 5230 chr3R 12920151 intron beat-Vb + chr3R 12922766 intron beat-Vb + chr3R 12925381 intron beat-Vb + chr3R_5_12920001 chr3R_12920001 RAL-85 953 chr3R 12943976 12944003 chr3R 12944063 12944090 5 87 1.0 1.5 1.2 2.3 114 chr3R 12943976 intergenic not near genes chr3R 12944033 intergenic not near genes chr3R 12944090 intergenic not near genes chr3R_5_12940001 chr3R_12940001 RAL-85 954 chr3R 12952278 12952316 chr3R 12952403 12952441 7 121 5.0 3.0 4.0 1.4 163 chr3R 12952278 intron grsm - chr3R 12952360 intron grsm - chr3R 12952441 intron grsm - chr3R_7_12950001 chr3R_12950001 RAL-85 955 chr3R 12999115 12999147 chr3R 12999193 12999225 6 78 2.0 1.0 1.5 2.4 110 chr3R 12999115 intron CG7518 + chr3R 12999170 intron CG7518 + chr3R 12999225 intron CG7518 + chr3R_6_12995001 chr3R_12995001 RAL-85 956 chr3R 13143045 13143065 chr3R 13148618 13148634 mdg3 4 5573 4.0 3.5 3.8 0.8 5589 chr3R 13143045 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148634 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13145001 chr3R_13145001 RAL-85 957 chr3R 13151366 13151393 chr3R 13151492 13151514 4 120 0.5 3.0 1.8 1.4 148 chr3R 13151366 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151440 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151514 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13150001 chr3R_13150001 RAL-85 958 chr3R 13195951 13195982 chr3R 13196046 13196077 16 94 2.5 4.0 3.2 3.8 126 chr3R 13195951 intergenic not near genes chr3R 13196014 intergenic not near genes chr3R 13196077 intergenic not near genes chr3R_16_13195001 chr3R_13195001 RAL-85 959 chr3R 13205419 13205441 chr3R 13205492 13205522 12 80 4.0 3.0 3.5 2.7 103 chr3R 13205419 intergenic not near genes chr3R 13205470 intergenic not near genes chr3R 13205522 intergenic not near genes chr3R_12_13205001 chr3R_13205001 RAL-85 960 chr3R 13234906 13234934 chr3R 13235002 13235030 12 94 4.0 4.5 4.2 2.3 124 chr3R 13234906 intron Ace - chr3R 13234968 intron Ace - chr3R 13235030 intron Ace - chr3R_12_13230001 chr3R_13230001 RAL-85 961 chr3R 13237682 13237711 chr3R 13237766 13237796 8 85 3.5 4.0 3.8 1.7 114 chr3R 13237682 intron Ace - chr3R 13237739 intron Ace - chr3R 13237796 intron Ace - chr3R_8_13235001 chr3R_13235001 RAL-85 962 chr3R 13248657 13248680 chr3R 13248756 13248779 4 99 0.0 1.0 0.5 2.7 122 chr3R 13248657 intron Ace - chr3R 13248718 intron Ace - chr3R 13248779 intron Ace - chr3R_4_13245001 chr3R_13245001 RAL-85 963 chr3R 13274214 13274248 chr3R 13274292 13274327 11 79 1.0 3.0 2.0 3.7 113 chr3R 13274214 intergenic not near genes chr3R 13274270 intergenic not near genes chr3R 13274327 intergenic not near genes chr3R_11_13270001 chr3R_13270001 RAL-85 964 chr3R 13323958 13323989 chr3R 13324069 13324100 12 111 0.0 6.0 3.0 3.0 142 chr3R 13323958 intergenic not near genes chr3R 13324029 intergenic not near genes chr3R 13324100 intergenic not near genes chr3R_12_13320001 chr3R_13320001 RAL-85 965 chr3R 13378836 13378864 chr3R 13378927 13378954 4 91 2.0 0.5 1.2 1.8 118 chr3R 13378836 intron CG9813 - chr3R 13378895 intron CG9813 - chr3R 13378954 intron CG9813 - chr3R_4_13375001 chr3R_13375001 RAL-85 966 chr3R 13391270 13391301 chr3R 13391357 13391388 7 87 3.0 2.5 2.8 1.8 118 chr3R 13391270 intron CCHa2 - chr3R 13391329 intron CCHa2 - chr3R 13391388 intron CCHa2 - chr3R_7_13390001 chr3R_13390001 RAL-85 967 chr3R 13401349 13401373 chr3R 13401434 13401457 15 82 2.5 2.0 2.2 4.7 108 chr3R 13401349 intron CG9796 - chr3R 13401403 intron CG9796 - chr3R 13401457 intron CG9796 - chr3R_15_13400001 chr3R_13400001 RAL-85 968 chr3R 13470846 13470871 chr3R 13471175 13471200 6 329 3.0 2.0 2.5 1.7 354 chr3R 13470846 intergenic not near genes chr3R 13471023 intergenic not near genes chr3R 13471200 intergenic not near genes chr3R_6_13470001 chr3R_13470001 RAL-85 969 chr3R 13617679 13617710 chr3R 13617783 13617817 4 106 1.0 0.5 0.8 2.2 138 chr3R 13617679 intergenic CR45680 - chr3R 13617748 intergenic CR45680 - chr3R 13617817 3` UTR CR45680 - chr3R_4_13615001 chr3R_13615001 RAL-85 970 chr3R 13626054 13626079 chr3R 13626150 13626175 6 96 1.5 0.5 1.0 3.0 121 chr3R 13626054 intergenic not near genes chr3R 13626114 intergenic not near genes chr3R 13626175 intergenic not near genes chr3R_6_13625001 chr3R_13625001 RAL-85 971 chr3R 13693028 13693028 chr3R 21907534 21907536 7 8214507 4.0 16.0 10.0 0.6 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_7_17800001 chr3R_17800001 RAL-85 972 chr3R 13743275 13743286 chr3R 13743352 13743361 6 77 2.0 4.5 3.2 1.4 86 chr3R 13743275 intron CG34383 + chr3R 13743318 intron CG34383 + chr3R 13743361 intron CG34383 + chr3R_6_13740001 chr3R_13740001 RAL-85 973 chr3R 13863683 13863712 chr3R 13863771 13863800 8 88 3.0 3.5 3.2 1.9 117 chr3R 13863683 intergenic not near genes chr3R 13863742 intergenic not near genes chr3R 13863800 intergenic not near genes chr3R_8_13860001 chr3R_13860001 RAL-85 974 chr3R 14021649 14021670 chr3R 14023466 14023487 S-element 5 1817 1.5 1.0 1.2 2.3 1838 chr3R 14021649 intron rdx - chr3R 14022568 intron rdx - chr3R 14023487 intron rdx - chr3R_5_14020001 chr3R_14020001 RAL-85 975 chr3R 14062845 14062872 chr3R 14062922 14062949 4 77 2.0 0.5 1.2 1.8 104 chr3R 14062845 intron foxo + chr3R 14062897 intron foxo + chr3R 14062949 intron foxo + chr3R_4_14060001 chr3R_14060001 RAL-85 976 chr3R 14083398 14083422 chr3R 14083499 14083523 5 101 1.5 0.0 0.8 2.8 125 chr3R 14083398 intron foxo + chr3R 14083460 intron foxo + chr3R 14083523 intron foxo + chr3R_5_14080001 chr3R_14080001 RAL-85 977 chr3R 14246413 14246417 chr3R 14247882 14247913 jockey 4 1482 2.5 3.0 2.8 1.1 1500 chr3R 14246413 intergenic not near genes chr3R 14247163 intergenic not near genes chr3R 14247913 intergenic not near genes chr3R_4_14245001 chr3R_14245001 RAL-85 978 chr3R 14339617 14339643 chr3R 14339763 14339789 6 146 1.0 2.0 1.5 2.4 172 chr3R 14339617 intron NK7.1 - chr3R 14339703 intron NK7.1 - chr3R 14339789 intron NK7.1 - chr3R_6_14335001 chr3R_14335001 RAL-85 979 chr3R 14364059 14364089 chr3R 14364135 14364165 8 75 1.5 2.5 2.0 2.7 106 chr3R 14364059 intron NK7.1 - chr3R 14364112 intron NK7.1 - chr3R 14364165 intron NK7.1 - chr3R_8_14360001 chr3R_14360001 RAL-85 980 chr3R 14426047 14426077 chr3R 14426151 14426181 6 104 2.0 1.0 1.5 2.4 134 chr3R 14426047 intron cv-c - chr3R 14426114 intron cv-c - chr3R 14426181 intron cv-c - chr3R_6_14425001 chr3R_14425001 RAL-85 981 chr3R 14440741 14440754 chr3R 14440817 14440830 4 76 0.0 3.0 1.5 1.6 89 chr3R 14440741 intron cv-c - chr3R 14440786 intron cv-c - chr3R 14440830 intron cv-c - chr3R_4_14440001 chr3R_14440001 RAL-85 982 chr3R 14458900 14459078 chr3R 14458980 14459217 16 118 2.0 0.5 1.2 7.3 317 chr3R 14458900 intron cv-c - chr3R 14459058 intron cv-c - chr3R 14459217 intron cv-c - chr3R_16_14455001 chr3R_14455001 RAL-85 983 chr3R 14549811 14549831 chr3R 14549887 14549907 4 75 1.5 3.5 2.5 1.1 96 chr3R 14549811 intron Pde6 - chr3R 14549859 intron Pde6 - chr3R 14549907 intron Pde6 - chr3R_4_14545001 chr3R_14545001 RAL-85 984 chr3R 14704391 14704412 chr3R 14704468 14704488 9 77 1.0 4.5 2.8 2.4 97 chr3R 14704391 intron kibra - chr3R 14704440 intron kibra - chr3R 14704488 intron kibra - chr3R_9_14700001 chr3R_14700001 RAL-85 985 chr3R 14842567 14842594 chr3R 14842650 14842678 8 83 2.0 1.5 1.8 2.9 111 chr3R 14842567 intron btsz - chr3R 14842622 intron btsz - chr3R 14842678 intron btsz - chr3R_8_14840001 chr3R_14840001 RAL-85 986 chr3R 14934645 14934674 chr3R 14934951 14934957 5 302 7.0 3.5 5.2 0.8 312 chr3R 14934645 intergenic not near genes chr3R 14934801 intergenic not near genes chr3R 14934957 intergenic not near genes chr3R_5_14930001 chr3R_14930001 RAL-85 987 chr3R 14954807 14954837 chr3R 14955019 14955049 4 212 1.0 1.5 1.2 1.8 242 chr3R 14954807 intergenic not near genes chr3R 14954928 intergenic not near genes chr3R 14955049 intergenic not near genes chr3R_4_14950001 chr3R_14950001 RAL-85 988 chr3R 14955105 14955123 chr3R 14955535 14955553 5 430 1.5 4.5 3.0 1.2 448 chr3R 14955105 intergenic not near genes chr3R 14955329 intergenic not near genes chr3R 14955553 intergenic not near genes chr3R_5_14955001 chr3R_14955001 RAL-85 989 chr3R 15026330 15026344 chr3R 15026416 15026430 7 86 4.0 2.5 3.2 1.7 100 chr3R 15026330 intergenic not near genes chr3R 15026380 intergenic not near genes chr3R 15026430 intergenic not near genes chr3R_7_15025001 chr3R_15025001 RAL-85 990 chr3R 15084158 15084177 chr3R 15084290 15084309 4 132 0.5 1.5 1.0 2.0 151 chr3R 15084158 intron CG6966 - chr3R 15084234 intron CG6966 - chr3R 15084309 intron CG6966 - chr3R_4_15080001 chr3R_15080001 RAL-85 991 chr3R 15114919 15114939 chr3R 15114996 15115016 4 72 0.5 1.0 0.8 2.2 97 chr3R 15114919 intron CG42788 - chr3R 15114968 intron CG42788 - chr3R 15115016 intron CG42788 - chr3R_4_15110001 chr3R_15110001 RAL-85 992 chr3R 15155772 15155800 chr3R 15156084 15156112 5 312 4.0 1.0 2.5 1.4 340 chr3R 15155772 intron Gyc88E + chr3R 15155942 intron Gyc88E + chr3R 15156112 intron Gyc88E + chr3R_5_15155001 chr3R_15155001 RAL-85 993 chr3R 15184535 15184568 chr3R 15184617 15184650 16 82 3.5 5.5 4.5 2.9 115 chr3R 15184535 intron Gyc88E + chr3R 15184592 intron Gyc88E + chr3R 15184650 intron Gyc88E + chr3R_16_15180001 chr3R_15180001 RAL-85 994 chr3R 15286987 15286988 chr3R 21907534 21907536 6 6620548 10.0 16.0 13.0 0.4 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_6_18595001 chr3R_18595001 RAL-85 995 chr3R 15419275 15419308 chr3R 15419392 15419425 11 117 4.5 5.5 5.0 1.8 150 chr3R 15419275 intergenic not near genes chr3R 15419350 intergenic not near genes chr3R 15419425 intergenic not near genes chr3R_11_15415001 chr3R_15415001 RAL-85 996 chr3R 15426453 15426488 chr3R 15426562 15426596 10 109 2.5 0.5 1.5 4.0 143 chr3R 15426453 intron CG6118 - chr3R 15426524 intron CG6118 - chr3R 15426596 intron CG6118 - chr3R_10_15425001 chr3R_15425001 RAL-85 997 chr3R 15499249 15499267 chr3R 15499326 15499344 5 77 1.5 4.0 2.8 1.3 95 chr3R 15499249 intergenic not near genes chr3R 15499296 intergenic not near genes chr3R 15499344 intergenic not near genes chr3R_5_15495001 chr3R_15495001 RAL-85 998 chr3R 15571247 15571496 chr3R 15571354 15571587 17 103 2.0 5.5 3.8 3.5 340 chr3R 15571247 intergenic not near genes chr3R 15571417 intergenic not near genes chr3R 15571587 intergenic not near genes chr3R_17_15570001 chr3R_15570001 RAL-85 999 chr3R 15601165 15601196 chr3R 15608687 15608718 412 7 7522 3.0 2.0 2.5 2.0 7553 chr3R 15601165 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_7_15600001 chr3R_15600001 RAL-85 1000 chr3R 15639339 15639366 chr3R 15639625 15639652 8 286 2.5 1.5 2.0 2.7 313 chr3R 15639339 intergenic not near genes chr3R 15639496 intergenic not near genes chr3R 15639652 intergenic not near genes chr3R_8_15635001 chr3R_15635001 RAL-85 1001 chr3R 15950164 15950186 chr3R 15950242 15950264 7 78 2.5 4.0 3.2 1.7 100 chr3R 15950164 intron Sap47 + chr3R 15950214 intron,3` UTR Sap47 +,CG31088 - chr3R 15950264 intron,exon Sap47 +,CG31088 - chr3R_7_15950001 chr3R_15950001 RAL-85 1002 chr3R 16073445 16073471 chr3R 16073549 16073575 7 104 1.5 0.0 0.8 3.9 130 chr3R 16073445 intron Mhcl - chr3R 16073510 intron Mhcl - chr3R 16073575 intron Mhcl - chr3R_7_16070001 chr3R_16070001 RAL-85 1003 chr3R 16472582 16472601 chr3R 16472656 16472656 8 71 4.5 8.0 6.2 1.1 74 chr3R 16472582 intergenic Gyc-89Da + chr3R 16472619 5` UTR Gyc-89Da + chr3R 16472656 5` UTR Gyc-89Da + chr3R_8_16470001 chr3R_16470001 RAL-85 1004 chr3R 16667082 16667109 chr3R 16667161 16667191 11 82 1.5 1.5 1.5 4.4 109 chr3R 16667082 intron Ubx - chr3R 16667136 intron Ubx - chr3R 16667191 intron Ubx - chr3R_11_16665001 chr3R_16665001 RAL-85 1005 chr3R 16671508 16671537 chr3R 16671592 16671623 6 85 3.0 4.0 3.5 1.3 115 chr3R 16671508 intron Ubx - chr3R 16671566 intron Ubx - chr3R 16671623 intron Ubx - chr3R_6_16670001 chr3R_16670001 RAL-85 1006 chr3R 16756318 16756354 chr3R 16762508 16762544 diver 13 6191 2.5 2.0 2.2 4.1 6226 chr3R 16756318 intron bxd - chr3R 16759431 intron bxd - chr3R 16762544 intron bxd - chr3R_13_16755001 chr3R_16755001 RAL-85 1007 chr3R 17022331 17022358 chr3R 17022410 17022434 13 78 2.0 3.0 2.5 3.7 103 chr3R 17022331 intron Pxd + chr3R 17022382 intron Pxd + chr3R 17022434 intron Pxd + chr3R_13_17020001 chr3R_17020001 RAL-85 1008 chr3R 17294671 17294692 chr3R 17295095 17295120 BS 6 427 4.0 1.5 2.8 1.6 449 chr3R 17294671 intergenic not near genes chr3R 17294896 intergenic not near genes chr3R 17295120 intergenic not near genes chr3R_6_17290001 chr3R_17290001 RAL-85 1009 chr3R 17346247 17346247 chr3R 21907534 21907535 4 4561288 15.0 16.0 15.5 0.2 4561288 chr3R 17346247 intron beat-IIa - chr3R 19626891 intron CG6231 - chr3R 21907535 intergenic CG6678 + chr3R_4_19625001 chr3R_19625001 RAL-85 1010 chr3R 17346700 17346711 chr3R 17348263 17348274 F-element 4 1563 0.0 1.0 0.5 2.7 1574 chr3R 17346700 intron beat-IIa - chr3R 17347487 intron beat-IIa - chr3R 17348274 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-85 1011 chr3R 17348725 17348754 chr3R 17348814 17348842 12 88 2.0 5.0 3.5 2.7 117 chr3R 17348725 intron beat-IIa - chr3R 17348784 intron beat-IIa - chr3R 17348842 intron beat-IIa - chr3R_12_17345001 chr3R_17345001 RAL-85 1012 chr3R 17350784 17350790 chr3R 17350900 17350903 4 115 2.5 3.0 2.8 1.1 119 chr3R 17350784 intron beat-IIa - chr3R 17350844 intron beat-IIa - chr3R 17350903 intron beat-IIa - chr3R_4_17350001 chr3R_17350001 RAL-85 1013 chr3R 17394439 17394466 chr3R 17394603 17394629 5 162 5.5 4.0 4.8 0.9 190 chr3R 17394439 intron CREG - chr3R 17394534 intron CREG - chr3R 17394629 5` UTR CREG - chr3R_5_17390001 chr3R_17390001 RAL-85 1014 chr3R 17461201 17461216 chr3R 17461283 17461297 4 82 0.5 3.5 2.0 1.3 96 chr3R 17461201 intergenic not near genes chr3R 17461249 intergenic not near genes chr3R 17461297 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-85 1015 chr3R 17497963 17497985 chr3R 17498049 17498071 9 86 1.5 1.0 1.2 4.1 108 chr3R 17497963 intron Dscam3 - chr3R 17498017 intron Dscam3 - chr3R 17498071 intron Dscam3 - chr3R_9_17495001 chr3R_17495001 RAL-85 1016 chr3R 17521570 17521579 chr3R 17521730 17521739 4 158 1.5 4.5 3.0 1.0 169 chr3R 17521570 intergenic not near genes chr3R 17521654 intergenic not near genes chr3R 17521739 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-85 1017 chr3R 17521580 17521582 chr3R 17521724 17521742 4 156 1.5 3.0 2.2 1.2 162 chr3R 17521580 intergenic not near genes chr3R 17521661 intergenic not near genes chr3R 17521742 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-85 1018 chr3R 17591301 17591322 chr3R 17591728 17591758 F-element 8 430 3.0 2.0 2.5 2.3 457 chr3R 17591301 intergenic not near genes chr3R 17591530 intergenic not near genes chr3R 17591758 intergenic not near genes chr3R_8_17590001 chr3R_17590001 RAL-85 1019 chr3R 17845212 17845217 chr3R 17845289 17845294 4 77 6.5 5.5 6.0 0.6 82 chr3R 17845212 intron tinc + chr3R 17845253 intron tinc + chr3R 17845294 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-85 1020 chr3R 17925856 17925889 chr3R 17927323 17927356 hobo 13 1465 4.5 8.5 6.5 1.7 1500 chr3R 17925856 intron cpo + chr3R 17926606 intron cpo + chr3R 17927356 intron cpo + chr3R_13_17925001 chr3R_17925001 RAL-85 1021 chr3R 18006448 18006463 chr3R 18006535 18006550 7 87 3.0 11.5 7.2 0.9 102 chr3R 18006448 intron cpo + chr3R 18006499 intron cpo + chr3R 18006550 intron cpo + chr3R_7_18005001 chr3R_18005001 RAL-85 1022 chr3R 18108243 18108268 chr3R 18108337 18108363 6 95 1.5 1.0 1.2 2.7 120 chr3R 18108243 intron sr + chr3R 18108303 intron sr + chr3R 18108363 intron sr + chr3R_6_18105001 chr3R_18105001 RAL-85 1023 chr3R 18114831 18114848 chr3R 18114906 18114923 4 74 1.0 2.0 1.5 1.6 92 chr3R 18114831 intron sr + chr3R 18114877 intron sr + chr3R 18114923 intron sr + chr3R_4_18110001 chr3R_18110001 RAL-85 1024 chr3R 18206080 18206113 chr3R 18206165 18206179 21 84 4.0 3.0 3.5 4.7 99 chr3R 18206080 intron CG7985 + chr3R 18206130 intron CG7985 + chr3R 18206179 intron CG7985 + chr3R_21_18205001 chr3R_18205001 RAL-85 1025 chr3R 18235229 18235243 chr3R 18235405 18235419 4 176 2.0 1.0 1.5 1.6 190 chr3R 18235229 intergenic not near genes chr3R 18235324 intergenic not near genes chr3R 18235419 intergenic not near genes chr3R_4_18235001 chr3R_18235001 RAL-85 1026 chr3R 18276115 18276133 chr3R 18276194 18276196 12 77 5.0 4.0 4.5 2.2 81 chr3R 18276115 intron eIF-1A + chr3R 18276156 intron eIF-1A + chr3R 18276196 intron eIF-1A + chr3R_12_18275001 chr3R_18275001 RAL-85 1027 chr3R 18670381 18670408 chr3R 18670473 18670501 5 93 4.5 0.5 2.5 1.4 120 chr3R 18670381 intron CG7702 + chr3R 18670441 intron CG7702 + chr3R 18670501 intron CG7702 + chr3R_5_18670001 chr3R_18670001 RAL-85 1028 chr3R 18720307 18720334 chr3R 18720403 18720430 9 95 4.5 4.5 4.5 1.6 123 chr3R 18720307 intron Cha + chr3R 18720368 intron Cha + chr3R 18720430 intron Cha + chr3R_9_18720001 chr3R_18720001 RAL-85 1029 chr3R 18766781 18766802 chr3R 18766859 18766880 11 78 2.0 5.5 3.8 2.3 99 chr3R 18766781 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766880 intron CG7720 - chr3R_11_18765001 chr3R_18765001 RAL-85 1030 chr3R 18808480 18808506 chr3R 18808550 18808583 7 75 0.5 3.0 1.8 2.5 103 chr3R 18808480 intron CG18208 - chr3R 18808532 intron CG18208 - chr3R 18808583 intron CG18208 - chr3R_7_18805001 chr3R_18805001 RAL-85 1031 chr3R 18812074 18812107 chr3R 18812152 18812185 17 78 5.5 3.0 4.2 3.3 111 chr3R 18812074 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_17_18810001 chr3R_18810001 RAL-85 1032 chr3R 18839812 18839838 chr3R 18839896 18839922 12 84 2.0 5.0 3.5 2.7 110 chr3R 18839812 intron CG18208 - chr3R 18839867 intron CG18208 - chr3R 18839922 intron CG18208 - chr3R_12_18835001 chr3R_18835001 RAL-85 1033 chr3R 19207387 19207415 chr3R 19207475 19207485 6 84 0.5 2.0 1.2 2.7 98 chr3R 19207387 intergenic not near genes chr3R 19207436 intergenic not near genes chr3R 19207485 intergenic not near genes chr3R_6_19205001 chr3R_19205001 RAL-85 1034 chr3R 19327299 19327328 chr3R 19327377 19327406 4 78 0.0 0.0 0.0 4.0 107 chr3R 19327299 3` UTR CR44175 - chr3R 19327352 3` UTR CR44175 - chr3R 19327406 intron CR44175 - chr3R_4_19325001 chr3R_19325001 RAL-85 1035 chr3R 19490443 19490458 chr3R 19490526 19490547 8 88 6.0 3.0 4.5 1.5 104 chr3R 19490443 intron,intron Dys +,CG15025 - chr3R 19490495 intron,intron Dys +,CG15025 - chr3R 19490547 intron,intron Dys +,CG15025 - chr3R_8_19490001 chr3R_19490001 RAL-85 1036 chr3R 19505941 19505968 chr3R 19506035 19506067 7 98 3.0 2.5 2.8 1.8 126 chr3R 19505941 intron Dys + chr3R 19506004 intron Dys + chr3R 19506067 intron Dys + chr3R_7_19505001 chr3R_19505001 RAL-85 1037 chr3R 19683511 19683545 chr3R 19683656 19683689 14 142 4.0 3.5 3.8 2.9 178 chr3R 19683511 intron Naam + chr3R 19683600 intron Naam + chr3R 19683689 intron Naam + chr3R_14_19680001 chr3R_19680001 RAL-85 1038 chr3R 19859974 19859995 chr3R 19860043 19860076 17 78 2.0 1.0 1.5 6.8 102 chr3R 19859974 intron Ire1 - chr3R 19860025 intron Ire1 - chr3R 19860076 intron Ire1 - chr3R_17_19860001 chr3R_19860001 RAL-85 1039 chr3R 19945972 19946001 chr3R 19946075 19946104 8 103 2.5 1.0 1.8 2.9 132 chr3R 19945972 intron Hs6st - chr3R 19946038 intron Hs6st - chr3R 19946104 intron Hs6st - chr3R_8_19945001 chr3R_19945001 RAL-85 1040 chr3R 20008835 20008847 chr3R 20008916 20008928 4 81 0.0 5.5 2.8 1.1 93 chr3R 20008835 intergenic MED25 +,Hs6st - chr3R 20008882 intergenic MED25 +,Hs6st - chr3R 20008928 intergenic MED25 +,Hs6st - chr3R_4_20005001 chr3R_20005001 RAL-85 1041 chr3R 20041113 20041147 chr3R 20041215 20041248 4 100 3.5 0.5 2.0 1.3 135 chr3R 20041113 intron CG17193 - chr3R 20041180 intron CG17193 - chr3R 20041248 intron CG17193 - chr3R_4_20040001 chr3R_20040001 RAL-85 1042 chr3R 20109547 20109570 chr3R 20114753 20114776 copia 5 5206 1.0 2.0 1.5 2.0 5229 chr3R 20109547 intergenic not near genes chr3R 20112162 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-85 1043 chr3R 20205565 20205594 chr3R 20205687 20205716 5 122 0.5 1.0 0.8 2.8 151 chr3R 20205565 intron Nlg4 + chr3R 20205640 intron Nlg4 + chr3R 20205716 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-85 1044 chr3R 20308986 20309015 chr3R 20309062 20309091 7 75 1.0 3.5 2.2 2.2 105 chr3R 20308986 intergenic CG42668 + chr3R 20309038 intergenic CG42668 + chr3R 20309091 intergenic CG42668 + chr3R_7_20305001 chr3R_20305001 RAL-85 1045 chr3R 20489012 20489024 chr3R 20489088 20489100 4 76 2.0 0.0 1.0 2.0 88 chr3R 20489012 intergenic not near genes chr3R 20489056 intergenic not near genes chr3R 20489100 intergenic not near genes chr3R_4_20485001 chr3R_20485001 RAL-85 1046 chr3R 20512344 20512351 chr3R 20512427 20512434 4 82 7.0 3.5 5.2 0.6 90 chr3R 20512344 5` UTR CG4288 - chr3R 20512389 5` UTR CG4288 - chr3R 20512434 5` UTR CG4288 - chr3R_4_20510001 chr3R_20510001 RAL-85 1047 chr3R 20594484 20594513 chr3R 20594574 20594603 4 90 1.5 0.0 0.8 2.2 119 chr3R 20594484 intron bon + chr3R 20594544 intron bon + chr3R 20594603 intron bon + chr3R_4_20590001 chr3R_20590001 RAL-85 1048 chr3R 20767506 20767539 chr3R 20767595 20767605 6 90 2.5 1.5 2.0 2.0 99 chr3R 20767506 intron Syp + chr3R 20767556 intron Syp + chr3R 20767605 intron Syp + chr3R_6_20765001 chr3R_20765001 RAL-85 1049 chr3R 20769580 20769599 chr3R 20769705 20769725 11 125 0.5 2.0 1.2 5.0 145 chr3R 20769580 intron Syp + chr3R 20769652 intron Syp + chr3R 20769725 intron Syp + chr3R_11_20765001 chr3R_20765001 RAL-85 1050 chr3R 20787439 20787457 chr3R 20787529 20787548 7 91 5.0 1.0 3.0 1.8 109 chr3R 20787439 intron Syp + chr3R 20787494 intron Syp + chr3R 20787548 intron Syp + chr3R_7_20785001 chr3R_20785001 RAL-85 1051 chr3R 20806963 20806988 chr3R 20807083 20807108 4 120 0.5 1.0 0.8 2.2 145 chr3R 20806963 3` UTR Syp + chr3R 20807036 3` UTR Syp + chr3R 20807108 3` UTR Syp + chr3R_4_20805001 chr3R_20805001 RAL-85 1052 chr3R 20900544 20900560 chr3R 20900625 20900641 4 81 1.0 1.5 1.2 1.8 97 chr3R 20900544 intergenic not near genes chr3R 20900592 intergenic not near genes chr3R 20900641 intergenic not near genes chr3R_4_20900001 chr3R_20900001 RAL-85 1053 chr3R 20938904 20938939 chr3R 20938991 20939016 12 84 3.0 6.0 4.5 2.2 112 chr3R 20938904 intron CG31191 - chr3R 20938960 intron CG31191 - chr3R 20939016 intron CG31191 - chr3R_12_20935001 chr3R_20935001 RAL-85 1054 chr3R 21141672 21141706 chr3R 21150153 21150185 Tirant 11 8478 3.5 4.0 3.8 2.3 8513 chr3R 21141672 intron SNF4Agamma + chr3R 21145928 intron SNF4Agamma + chr3R 21150185 intron SNF4Agamma + chr3R_11_21145001 chr3R_21145001 RAL-85 1055 chr3R 21385697 21385963 chr3R 21385779 21386040 13 77 2.0 0.5 1.2 5.9 343 chr3R 21385697 intergenic not near genes chr3R 21385868 intergenic not near genes chr3R 21386040 intergenic not near genes chr3R_13_21385001 chr3R_21385001 RAL-85 1056 chr3R 21586686 21586705 chr3R 21586785 21586804 6 99 4.0 1.5 2.8 1.6 118 chr3R 21586686 intron InR - chr3R 21586745 intron InR - chr3R 21586804 intron InR - chr3R_6_21585001 chr3R_21585001 RAL-85 1057 chr3R 21761118 21761153 chr3R 21768509 21768545 mdg1 16 7390 3.0 2.0 2.5 4.6 7427 chr3R 21761118 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768545 exon CG42335 + chr3R_16_21760001 chr3R_21760001 RAL-85 1058 chr3R 8339246 8339246 chr3R 21907534 21907534 5 13568288 11.5 16.0 13.8 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-85 1059 chr3R 21907534 21907534 chr3R 28831802 28831802 4 6924268 17.0 22.0 19.5 0.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_4_25365001 chr3R_25365001 RAL-85 1060 chr3R 8339246 8339247 chr3R 21907535 21907535 7 13568288 11.5 15.5 13.5 0.5 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-85 1061 chr3R 17346247 17346247 chr3R 21907535 21907535 4 4561288 15.0 15.5 15.2 0.2 4561288 chr3R 17346247 intron beat-IIa - chr3R 19626891 intron CG6231 - chr3R 21907535 intergenic CG6678 + chr3R_4_19625001 chr3R_19625001 RAL-85 1062 chr3R 21907535 21907535 chr3R 28831801 28831802 10 6924266 17.0 22.0 19.5 0.5 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_10_25365001 chr3R_25365001 RAL-85 1063 chr3R 21907536 21907536 chr3R 28831801 28831802 6 6924266 17.5 22.0 19.8 0.3 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_6_25365001 chr3R_25365001 RAL-85 1064 chr3R 21983155 21983170 chr3R 21983236 21983252 8 81 3.0 7.5 5.2 1.3 97 chr3R 21983155 intron Eip93F + chr3R 21983204 intron Eip93F + chr3R 21983252 intron Eip93F + chr3R_8_21980001 chr3R_21980001 RAL-85 1065 chr3R 22272350 22272370 chr3R 22272432 22272452 4 82 2.0 3.5 2.8 1.1 102 chr3R 22272350 intron SKIP + chr3R 22272401 intron SKIP + chr3R 22272452 intron SKIP + chr3R_4_22270001 chr3R_22270001 RAL-85 1066 chr3R 22322590 22322615 chr3R 22322686 22322710 7 98 2.0 2.0 2.0 2.3 120 chr3R 22322590 intron CG34377 - chr3R 22322650 intron CG34377 - chr3R 22322710 intron CG34377 - chr3R_7_22320001 chr3R_22320001 RAL-85 1067 chr3R 22336095 22336124 chr3R 22336189 22336218 6 94 1.0 0.5 0.8 3.3 123 chr3R 22336095 intron CG5388 - chr3R 22336156 intron CG5388 - chr3R 22336218 intron CG5388 - chr3R_6_22335001 chr3R_22335001 RAL-85 1068 chr3R 22450544 22450579 chr3R 22453184 22453219 NOF 15 2640 3.0 7.0 5.0 2.5 2675 chr3R 22450544 intron CG34376 + chr3R 22451882 intron CG34376 + chr3R 22453219 intron CG34376 + chr3R_15_22450001 chr3R_22450001 RAL-85 1069 chr3R 22597375 22597395 chr3R 22597452 22597471 4 76 4.0 0.0 2.0 1.3 96 chr3R 22597375 intron Efa6 + chr3R 22597423 intron Efa6 + chr3R 22597471 intron Efa6 + chr3R_4_22595001 chr3R_22595001 RAL-85 1070 chr3R 22797762 22797930 chr3R 22797848 22798026 17 90 0.0 0.0 0.0 17.0 264 chr3R 22797762 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798026 intergenic not near genes chr3R_17_22795001 chr3R_22795001 RAL-85 1071 chr3R 22860151 22860174 chr3R 22860243 22860266 9 92 0.5 3.0 1.8 3.2 115 chr3R 22860151 intergenic not near genes chr3R 22860208 intergenic not near genes chr3R 22860266 intergenic not near genes chr3R_9_22860001 chr3R_22860001 RAL-85 1072 chr3R 22867441 22867465 chr3R 22867570 22867595 16 130 5.5 4.0 4.8 2.8 154 chr3R 22867441 intergenic not near genes chr3R 22867518 intergenic not near genes chr3R 22867595 intergenic not near genes chr3R_16_22865001 chr3R_22865001 RAL-85 1073 chr3R 22893724 22893747 chr3R 22894204 22894206 10 477 8.5 2.5 5.5 1.5 482 chr3R 22893724 intergenic not near genes chr3R 22893965 intergenic not near genes chr3R 22894206 intergenic not near genes chr3R_10_22890001 chr3R_22890001 RAL-85 1074 chr3R 22911172 22911202 chr3R 22911268 22911298 7 96 4.5 2.0 3.2 1.7 126 chr3R 22911172 intron klg + chr3R 22911235 intron klg + chr3R 22911298 intron klg + chr3R_7_22910001 chr3R_22910001 RAL-85 1075 chr3R 22919155 22919188 chr3R 22919252 22919284 10 96 2.0 5.5 3.8 2.1 129 chr3R 22919155 intron klg + chr3R 22919220 intron klg + chr3R 22919284 intron klg + chr3R_10_22915001 chr3R_22915001 RAL-85 1076 chr3R 22971246 22971273 chr3R 22971340 22971367 7 93 2.0 4.0 3.0 1.8 121 chr3R 22971246 intergenic not near genes chr3R 22971306 intergenic not near genes chr3R 22971367 intergenic not near genes chr3R_7_22970001 chr3R_22970001 RAL-85 1077 chr3R 22993505 22993538 chr3R 22993640 22993673 5 135 2.0 3.0 2.5 1.4 168 chr3R 22993505 intron Nha2 - chr3R 22993589 intron Nha2 - chr3R 22993673 intron Nha2 - chr3R_5_22990001 chr3R_22990001 RAL-85 1078 chr3R 23064172 23064203 chr3R 23064281 23064312 14 109 3.0 2.5 2.8 3.7 140 chr3R 23064172 exon CG17111 - chr3R 23064242 intron CG17111 - chr3R 23064312 exon CG17111 - chr3R_14_23060001 chr3R_23060001 RAL-85 1079 chr3R 23067125 23067148 chr3R 23067228 23067240 6 99 9.0 2.0 5.5 0.9 115 chr3R 23067125 5` UTR CG17111 - chr3R 23067182 5` UTR CG17111 - chr3R 23067240 5` UTR CG17111 - chr3R_6_23065001 chr3R_23065001 RAL-85 1080 chr3R 23090408 23090434 chr3R 23090490 23090517 9 83 1.5 4.5 3.0 2.2 109 chr3R 23090408 intron CG13830 - chr3R 23090462 intron CG13830 - chr3R 23090517 intron CG13830 - chr3R_9_23090001 chr3R_23090001 RAL-85 1081 chr3R 23091260 23091282 chr3R 23091345 23091367 6 85 4.0 0.5 2.2 1.9 107 chr3R 23091260 intron CG13830 - chr3R 23091314 intron CG13830 - chr3R 23091367 intron CG13830 - chr3R_6_23090001 chr3R_23090001 RAL-85 1082 chr3R 23145165 23145194 chr3R 23145242 23145271 13 76 2.5 3.5 3.0 3.2 106 chr3R 23145165 intergenic not near genes chr3R 23145218 intergenic not near genes chr3R 23145271 intergenic not near genes chr3R_13_23145001 chr3R_23145001 RAL-85 1083 chr3R 23291248 23291282 chr3R 23291334 23291368 10 85 2.0 4.5 3.2 2.4 120 chr3R 23291248 3` UTR pnt - chr3R 23291308 3` UTR pnt - chr3R 23291368 exon pnt - chr3R_10_23290001 chr3R_23290001 RAL-85 1084 chr3R 23335439 23335464 chr3R 23335517 23335540 6 76 2.0 2.0 2.0 2.0 101 chr3R 23335439 intron pnt - chr3R 23335490 intron pnt - chr3R 23335540 intron pnt - chr3R_6_23335001 chr3R_23335001 RAL-85 1085 chr3R 23497961 23497976 chr3R 23498045 23498060 6 84 4.0 4.5 4.2 1.2 99 chr3R 23497961 intergenic not near genes chr3R 23498010 intergenic not near genes chr3R 23498060 intergenic not near genes chr3R_6_23495001 chr3R_23495001 RAL-85 1086 chr3R 23684696 23684719 chr3R 23685182 23685192 roo 11 480 6.5 6.5 6.5 1.5 496 chr3R 23684696 exon CG18754 + chr3R 23684944 intron CG18754 + chr3R 23685192 exon CG18754 + chr3R_11_23680001 chr3R_23680001 RAL-85 1087 chr3R 23684724 23684730 chr3R 23685181 23685183 roo 4 468 5.0 6.0 5.5 0.6 459 chr3R 23684724 intron CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685183 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-85 1088 chr3R 23688476 23688482 chr3R 23688567 23688572 4 90 6.0 5.0 5.5 0.6 96 chr3R 23688476 intergenic SPE + chr3R 23688524 intergenic SPE +,CG10254 - chr3R 23688572 intergenic SPE +,CG10254 - chr3R_4_23685001 chr3R_23685001 RAL-85 1089 chr3R 23688483 23688503 chr3R 23688564 23688594 10 89 2.5 3.5 3.0 2.5 111 chr3R 23688483 intergenic SPE + chr3R 23688538 intergenic SPE +,CG10254 - chr3R 23688594 intergenic CG10254 -,SPE + chr3R_10_23685001 chr3R_23685001 RAL-85 1090 chr3R 23937617 23937639 chr3R 23937715 23937737 5 98 2.0 3.0 2.5 1.4 120 chr3R 23937617 exon Gdh - chr3R 23937677 intron Gdh - chr3R 23937737 exon Gdh - chr3R_5_23935001 chr3R_23935001 RAL-85 1091 chr3R 23944913 23944935 chr3R 23944998 23945019 5 85 4.0 7.0 5.5 0.8 106 chr3R 23944913 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945019 exon CG12268 - chr3R_5_23940001 chr3R_23940001 RAL-85 1092 chr3R 24072084 24072116 chr3R 24072522 24072554 jockey 12 436 5.0 7.0 6.0 1.7 470 chr3R 24072084 intron 4EHP - chr3R 24072319 intron 4EHP - chr3R 24072554 intron 4EHP - chr3R_12_24070001 chr3R_24070001 RAL-85 1093 chr3R 24076924 24076946 chr3R 24078391 24078413 hobo 5 1467 4.5 5.5 5.0 0.8 1489 chr3R 24076924 intron 4EHP - chr3R 24077668 intron 4EHP - chr3R 24078413 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-85 1094 chr3R 24466467 24466489 chr3R 24466544 24466567 6 78 0.5 1.0 0.8 3.3 100 chr3R 24466467 intergenic not near genes chr3R 24466517 intergenic not near genes chr3R 24466567 intergenic not near genes chr3R_6_24465001 chr3R_24465001 RAL-85 1095 chr3R 24730091 24730121 chr3R 24732469 24732476 Doc 12 2372 3.5 0.5 2.0 4.0 2385 chr3R 24730091 intron tok + chr3R 24731284 intron tok + chr3R 24732476 intron tok + chr3R_12_24730001 chr3R_24730001 RAL-85 1096 chr3R 24743047 24743058 chr3R 24743132 24743143 5 85 2.0 3.0 2.5 1.4 96 chr3R 24743047 intron tok + chr3R 24743095 intron tok + chr3R 24743143 intron tok + chr3R_5_24740001 chr3R_24740001 RAL-85 1097 chr3R 24927125 24927155 chr3R 24931916 24931946 Doc 8 4791 2.0 0.0 1.0 4.0 4821 chr3R 24927125 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931946 intergenic CG11771 + chr3R_8_24925001 chr3R_24925001 RAL-85 1098 chr3R 24974913 24974935 chr3R 24974992 24975014 8 79 3.0 6.0 4.5 1.5 101 chr3R 24974913 intergenic not near genes chr3R 24974964 intergenic not near genes chr3R 24975014 intergenic not near genes chr3R_8_24970001 chr3R_24970001 RAL-85 1099 chr3R 25203344 25203364 chr3R 25203474 25203493 5 130 4.5 1.0 2.8 1.3 149 chr3R 25203344 intron,intron Cad96Ca -,CG13654 + chr3R 25203418 intron,intron Cad96Ca -,CG13654 + chr3R 25203493 intron,intron Cad96Ca -,CG13654 + chr3R_5_25200001 chr3R_25200001 RAL-85 1100 chr3R 25296171 25296196 chr3R 25296252 25296277 10 81 0.5 1.0 0.8 5.6 106 chr3R 25296171 3` UTR CG31097 - chr3R 25296224 3` UTR CG31097 - chr3R 25296277 3` UTR CG31097 - chr3R_10_25295001 chr3R_25295001 RAL-85 1101 chr3R 25612910 25612943 chr3R 25612987 25613020 13 77 2.5 5.0 3.8 2.7 110 chr3R 25612910 intron Npl4 - chr3R 25612965 intron Npl4 - chr3R 25613020 intron Npl4 - chr3R_13_25610001 chr3R_25610001 RAL-85 1102 chr3R 25673653 25673681 chr3R 25673782 25673798 7 128 2.5 1.5 2.0 2.3 145 chr3R 25673653 intron Lgr3 + chr3R 25673726 intron Lgr3 + chr3R 25673798 intron Lgr3 + chr3R_7_25670001 chr3R_25670001 RAL-85 1103 chr3R 25689127 25689154 chr3R 25689235 25689261 7 108 1.5 3.5 2.5 2.0 134 chr3R 25689127 intergenic not near genes chr3R 25689194 intergenic not near genes chr3R 25689261 intergenic not near genes chr3R_7_25685001 chr3R_25685001 RAL-85 1104 chr3R 25801266 25801290 chr3R 25802250 25802274 4 984 2.0 4.5 3.2 1.0 1008 chr3R 25801266 intergenic not near genes chr3R 25801770 intergenic not near genes chr3R 25802274 intergenic not near genes chr3R_4_25800001 chr3R_25800001 RAL-85 1105 chr3R 25832695 25832723 chr3R 25841877 25841905 roo 13 9181 5.0 6.0 5.5 2.0 9210 chr3R 25832695 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_13_25835001 chr3R_25835001 RAL-85 1106 chr3R 25847702 25847722 chr3R 25847866 25847885 5 164 2.0 2.5 2.2 1.6 183 chr3R 25847702 intergenic CR45656 -,CR45657 + chr3R 25847794 intergenic CR45656 -,CR45657 + chr3R 25847885 intergenic CR45657 +,CR45656 - chr3R_5_25845001 chr3R_25845001 RAL-85 1107 chr3R 26122467 26122476 chr3R 26122543 26122543 4 74 3.5 3.0 3.2 1.0 76 chr3R 26122467 intron CG31324 + chr3R 26122505 intron CG31324 + chr3R 26122543 intron CG31324 + chr3R_4_26120001 chr3R_26120001 RAL-85 1108 chr3R 26235490 26235522 chr3R 26235572 26235604 10 78 2.5 5.5 4.0 2.0 114 chr3R 26235490 5` UTR CR42745 + chr3R 26235547 5` UTR CR42745 + chr3R 26235604 5` UTR CR42745 + chr3R_10_26235001 chr3R_26235001 RAL-85 1109 chr3R 26285904 26285930 chr3R 26286002 26286027 12 97 2.5 3.5 3.0 3.0 123 chr3R 26285904 intergenic not near genes chr3R 26285966 intergenic not near genes chr3R 26286027 intergenic not near genes chr3R_12_26285001 chr3R_26285001 RAL-85 1110 chr3R 26294715 26294750 chr3R 26294793 26294828 4 78 0.5 1.5 1.0 2.0 113 chr3R 26294715 intergenic not near genes chr3R 26294772 intergenic not near genes chr3R 26294828 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-85 1111 chr3R 26312288 26312309 chr3R 26313033 26313054 12 745 5.0 2.0 3.5 2.7 766 chr3R 26312288 intergenic not near genes chr3R 26312671 intergenic not near genes chr3R 26313054 intergenic not near genes chr3R_12_26310001 chr3R_26310001 RAL-85 1112 chr3R 26325683 26325710 chr3R 26325770 26325798 13 86 2.5 7.0 4.8 2.2 115 chr3R 26325683 intron CG33970 + chr3R 26325740 intron CG33970 + chr3R 26325798 intron CG33970 + chr3R_13_26325001 chr3R_26325001 RAL-85 1113 chr3R 26376335 26376350 chr3R 26385493 26385510 roo 5 9160 1.5 0.0 0.8 2.8 9175 chr3R 26376335 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385510 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-85 1114 chr3R 26482358 26482384 chr3R 26482434 26482462 14 77 6.0 3.5 4.8 2.4 104 chr3R 26482358 intron plum - chr3R 26482410 intron plum - chr3R 26482462 intron plum - chr3R_14_26480001 chr3R_26480001 RAL-85 1115 chr3R 26558328 26558359 chr3R 26565641 26565671 Stalker4 8 7311 2.0 4.0 3.0 2.0 7343 chr3R 26558328 intron scrib + chr3R 26562000 intron scrib + chr3R 26565671 intron scrib + chr3R_8_26560001 chr3R_26560001 RAL-85 1116 chr3R 26642747 26642762 chr3R 26643141 26643156 jockey 5 394 1.5 0.5 1.0 2.5 409 chr3R 26642747 intergenic not near genes chr3R 26642952 intergenic not near genes chr3R 26643156 intergenic not near genes chr3R_5_26640001 chr3R_26640001 RAL-85 1117 chr3R 26770242 26770272 chr3R 26770319 26770349 7 77 1.0 2.5 1.8 2.5 107 chr3R 26770242 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770349 intergenic not near genes chr3R_7_26770001 chr3R_26770001 RAL-85 1118 chr3R 26810556 26810586 chr3R 26811041 26811071 roo 6 485 2.0 5.5 3.8 1.2 515 chr3R 26810556 intron Tl + chr3R 26810814 intron Tl + chr3R 26811071 intron Tl + chr3R_6_26810001 chr3R_26810001 RAL-85 1119 chr3R 26845587 26845607 chr3R 26845667 26845674 11 79 3.5 8.0 5.8 1.6 87 chr3R 26845587 intron Lerp - chr3R 26845630 intron Lerp - chr3R 26845674 intron Lerp - chr3R_11_26845001 chr3R_26845001 RAL-85 1120 chr3R 27133526 27133545 chr3R 27133643 27133662 5 117 1.0 1.0 1.0 2.5 136 chr3R 27133526 intron CG6051 - chr3R 27133594 intron CG6051 - chr3R 27133662 intron CG6051 - chr3R_5_27130001 chr3R_27130001 RAL-85 1121 chr3R 27140513 27140547 chr3R 27148123 27148157 412 16 7610 4.5 3.5 4.0 3.2 7644 chr3R 27140513 intron CG6051 - chr3R 27144335 intron CG6051 - chr3R 27148157 intron CG6051 - chr3R_16_27140001 chr3R_27140001 RAL-85 1122 chr3R 27300861 27300864 chr3R 27300952 27300956 5 92 3.0 4.0 3.5 1.1 95 chr3R 27300861 intron CG3339 - chr3R 27300908 intron CG3339 - chr3R 27300956 intron CG3339 - chr3R_5_27300001 chr3R_27300001 RAL-85 1123 chr3R 27300865 27300874 chr3R 27300951 27300964 6 90 1.0 3.5 2.2 1.9 99 chr3R 27300865 intron CG3339 - chr3R 27300914 intron CG3339 - chr3R 27300964 intron CG3339 - chr3R_6_27300001 chr3R_27300001 RAL-85 1124 chr3R 27315992 27316012 chr3R 27316068 27316088 8 76 5.0 4.0 4.5 1.5 96 chr3R 27315992 intron CG3339 - chr3R 27316040 intron CG3339 - chr3R 27316088 exon CG3339 - chr3R_8_27315001 chr3R_27315001 RAL-85 1125 chr3R 27377471 27377502 chr3R 27377558 27377590 7 88 4.0 1.0 2.5 2.0 119 chr3R 27377471 3` UTR side - chr3R 27377530 3` UTR side - chr3R 27377590 3` UTR side - chr3R_7_27375001 chr3R_27375001 RAL-85 1126 chr3R 27393751 27393784 chr3R 27393835 27393868 12 84 2.0 1.0 1.5 4.8 117 chr3R 27393751 intron side - chr3R 27393810 intron side - chr3R 27393868 intron side - chr3R_12_27390001 chr3R_27390001 RAL-85 1127 chr3R 27578480 27578515 chr3R 27578570 27578580 17 88 4.5 4.5 4.5 3.1 100 chr3R 27578480 intron wdb - chr3R 27578530 intron wdb - chr3R 27578580 intron wdb - chr3R_17_27575001 chr3R_27575001 RAL-85 1128 chr3R 27779274 27779284 chr3R 27779354 27779364 5 80 4.0 11.5 7.8 0.6 90 chr3R 27779274 exon CG34353 - chr3R 27779319 intron CG34353 - chr3R 27779364 intron CG34353 - chr3R_5_27775001 chr3R_27775001 RAL-85 1129 chr3R 27856763 27856793 chr3R 27858246 27858276 hopper2 4 1483 1.5 1.5 1.5 1.6 1513 chr3R 27856763 intron CG34353 - chr3R 27857520 intron CG34353 - chr3R 27858276 intron CG34353 - chr3R_4_27855001 chr3R_27855001 RAL-85 1130 chr3R 27862952 27862975 chr3R 27868257 27868280 Transpac 7 5305 1.5 0.5 1.0 3.5 5328 chr3R 27862952 intron CG34353 - chr3R 27865616 intron CG34353 - chr3R 27868280 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-85 1131 chr3R 27871053 27871088 chr3R 27871154 27871189 11 100 4.0 3.0 3.5 2.4 136 chr3R 27871053 intron CG34353 - chr3R 27871121 intron CG34353 - chr3R 27871189 intron CG34353 - chr3R_11_27870001 chr3R_27870001 RAL-85 1132 chr3R 27875704 27875729 chr3R 27882759 27882784 297 5 7055 3.0 3.0 3.0 1.2 7080 chr3R 27875704 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882784 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-85 1133 chr3R 28017960 28017975 chr3R 28018048 28018066 15 90 4.0 5.0 4.5 2.7 106 chr3R 28017960 intergenic not near genes chr3R 28018013 intergenic not near genes chr3R 28018066 intergenic not near genes chr3R_15_28015001 chr3R_28015001 RAL-85 1134 chr3R 28035488 28035515 chr3R 28035565 28035592 4 77 0.5 3.0 1.8 1.4 104 chr3R 28035488 intron CG34362 + chr3R 28035540 intron CG34362 + chr3R 28035592 intron CG34362 + chr3R_4_28035001 chr3R_28035001 RAL-85 1135 chr3R 28068504 28068521 chr3R 28073946 28073963 I-element 7 5442 1.0 3.5 2.2 2.2 5459 chr3R 28068504 intron CG34362 + chr3R 28071234 intron CG34362 + chr3R 28073963 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-85 1136 chr3R 28103322 28103360 chr3R 28103415 28103453 12 93 2.5 3.0 2.8 3.2 131 chr3R 28103322 intergenic not near genes chr3R 28103388 intergenic not near genes chr3R 28103453 intergenic not near genes chr3R_12_28100001 chr3R_28100001 RAL-85 1137 chr3R 28173676 28173701 chr3R 28181106 28181131 mdg1 6 7430 1.0 1.5 1.2 2.7 7455 chr3R 28173676 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181131 intron CG34354 + chr3R_6_28175001 chr3R_28175001 RAL-85 1138 chr3R 28231022 28231051 chr3R 28231100 28231128 4 78 1.5 2.0 1.8 1.4 106 chr3R 28231022 intron CG34354 + chr3R 28231075 intron CG34354 + chr3R 28231128 intron CG34354 + chr3R_4_28230001 chr3R_28230001 RAL-85 1139 chr3R 28253348 28253372 chr3R 28255858 28255881 jockey 9 2510 2.5 4.5 3.5 2.0 2533 chr3R 28253348 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255881 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-85 1140 chr3R 28305650 28305679 chr3R 28305865 28305897 6 217 1.5 2.5 2.0 2.0 247 chr3R 28305650 intergenic not near genes chr3R 28305774 intergenic not near genes chr3R 28305897 intergenic not near genes chr3R_6_28305001 chr3R_28305001 RAL-85 1141 chr3R 28352513 28352545 chr3R 28352853 28352885 11 340 5.0 4.5 4.8 1.9 372 chr3R 28352513 exon Or98b + chr3R 28352699 exon Or98b + chr3R 28352885 exon Or98b + chr3R_11_28350001 chr3R_28350001 RAL-85 1142 chr3R 28393061 28393077 chr3R 28393375 28393387 4 313 0.5 4.0 2.2 1.2 326 chr3R 28393061 intergenic not near genes chr3R 28393224 intergenic not near genes chr3R 28393387 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-85 1143 chr3R 28478423 28478445 chr3R 28478499 28478526 12 79 3.5 2.0 2.8 3.2 103 chr3R 28478423 intergenic not near genes chr3R 28478474 intergenic not near genes chr3R 28478526 intergenic not near genes chr3R_12_28475001 chr3R_28475001 RAL-85 1144 chr3R 28484353 28484374 chr3R 28486270 28486291 9 1917 10.5 32.0 21.2 0.4 1938 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486291 intergenic CG1894 + chr3R_9_28485001 chr3R_28485001 RAL-85 1145 chr3R 28626192 28626222 chr3R 28626292 28626322 11 100 1.0 3.5 2.2 3.4 130 chr3R 28626192 intron CG10011 - chr3R 28626257 intron CG10011 - chr3R 28626322 intron CG10011 - chr3R_11_28625001 chr3R_28625001 RAL-85 1146 chr3R 28736882 28736898 chr3R 28737100 28737116 5 218 8.5 2.0 5.2 0.8 234 chr3R 28736882 intergenic AstA-R2 - chr3R 28736999 intergenic AstA-R2 - chr3R 28737116 3` UTR AstA-R2 - chr3R_5_28735001 chr3R_28735001 RAL-85 1147 chr3R 28748016 28748037 chr3R 28748098 28748116 7 81 6.0 7.5 6.8 0.9 100 chr3R 28748016 intergenic CG10000 - chr3R 28748066 intergenic CG10000 - chr3R 28748116 intergenic CG10000 - chr3R_7_28745001 chr3R_28745001 RAL-85 1148 chr3R 28792870 28792894 chr3R 28797965 28797989 jockey 5 5094 3.0 4.0 3.5 1.1 5119 chr3R 28792870 intergenic not near genes chr3R 28795430 intergenic not near genes chr3R 28797989 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-85 1149 chr3R 21907534 21907536 chr3R 28831801 28831802 33 6924266 17.5 22.0 19.8 1.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_33_25365001 chr3R_25365001 RAL-85 1150 chr3R 29237250 29237283 chr3R 29239269 29239302 10 2020 22.0 6.5 14.2 0.7 2052 chr3R 29237250 exon CG11951 - chr3R 29238276 intron CG11951 - chr3R 29239302 exon CG31427 - chr3R_10_29235001 chr3R_29235001 RAL-85 1151 chr3R 29239238 29239250 chr3R 29245529 29245541 4 6291 6.5 26.5 16.5 0.2 6303 chr3R 29239238 exon CG31427 - chr3R 29242390 exon CG31445 - chr3R 29245541 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-85 1152 chr3R 29236316 29236337 chr3R 29245563 29245594 8 9256 57.5 33.0 45.2 0.2 9278 chr3R 29236316 exon CG11951 - chr3R 29240955 exon CG31445 - chr3R 29245594 exon SP1029 - chr3R_8_29240001 chr3R_29240001 RAL-85 1153 chr3R 29351733 29351750 chr3R 29351818 29351835 7 85 3.5 3.0 3.2 1.7 102 chr3R 29351733 intergenic not near genes chr3R 29351784 intergenic not near genes chr3R 29351835 intergenic not near genes chr3R_7_29350001 chr3R_29350001 RAL-85 1154 chr3R 29406628 29406639 chr3R 29407896 29407925 jockey 6 1279 4.5 2.0 3.2 1.4 1297 chr3R 29406628 intron Ptp99A + chr3R 29407276 intron Ptp99A + chr3R 29407925 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-85 1155 chr3R 29429789 29429806 chr3R 29429866 29429884 5 78 1.5 1.0 1.2 2.3 95 chr3R 29429789 intron Ptp99A + chr3R 29429836 intron Ptp99A + chr3R 29429884 intron Ptp99A + chr3R_5_29425001 chr3R_29425001 RAL-85 1156 chr3R 29436393 29436423 chr3R 29436474 29436504 6 81 5.0 2.0 3.5 1.3 111 chr3R 29436393 intron Ptp99A + chr3R 29436448 intron Ptp99A + chr3R 29436504 intron Ptp99A + chr3R_6_29435001 chr3R_29435001 RAL-85 1157 chr3R 29472021 29472037 chr3R 29472113 29472130 11 92 3.0 6.0 4.5 2.0 109 chr3R 29472021 intron Ptp99A + chr3R 29472076 intron Ptp99A + chr3R 29472130 intron Ptp99A + chr3R_11_29470001 chr3R_29470001 RAL-85 1158 chr3R 29606937 29606961 chr3R 29607015 29607029 5 74 1.0 0.0 0.5 3.3 92 chr3R 29606937 intron alph + chr3R 29606983 intron alph + chr3R 29607029 intron alph + chr3R_5_29605001 chr3R_29605001 RAL-85 1159 chr3R 29738270 29738300 chr3R 29739734 29739767 hobo 9 1466 3.5 3.5 3.5 2.0 1497 chr3R 29738270 intergenic CG1969 +,CG7598 + chr3R 29739018 intron CG1969 + chr3R 29739767 5` UTR CG1969 + chr3R_9_29735001 chr3R_29735001 RAL-85 1160 chr3R 29882021 29882042 chr3R 29891178 29891199 roo 6 9157 4.0 2.5 3.2 1.4 9178 chr3R 29882021 intron CG31038 + chr3R 29886610 intron CG31038 + chr3R 29891199 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-85 1161 chr3R 29953467 29953472 chr3R 29953526 29953553 4 72 5.0 3.5 4.2 0.8 86 chr3R 29953467 exon TkR99D - chr3R 29953510 intron TkR99D - chr3R 29953553 intron TkR99D - chr3R_4_29950001 chr3R_29950001 RAL-85 1162 chr3R 29966066 29966070 chr3R 29966142 29966147 5 77 3.5 11.0 7.2 0.6 81 chr3R 29966066 intron TkR99D - chr3R 29966106 intron TkR99D - chr3R 29966147 intron TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-85 1163 chr3R 30009024 30009039 chr3R 30009100 30009115 6 76 5.5 6.0 5.8 0.9 91 chr3R 30009024 intron,exon Nlp +,CG7912 - chr3R 30009070 intron,5` UTR Nlp +,CG7912 - chr3R 30009115 intron,5` UTR Nlp +,CG7912 - chr3R_6_30005001 chr3R_30005001 RAL-85 1164 chr3R 30032161 30032172 chr3R 30032240 30032251 6 78 4.0 0.5 2.2 1.9 90 chr3R 30032161 intron Axn + chr3R 30032206 intron Axn + chr3R 30032251 intron Axn + chr3R_6_30030001 chr3R_30030001 RAL-85 1165 chr3R 30077902 30077934 chr3R 30077989 30078021 7 87 1.5 1.0 1.2 3.2 119 chr3R 30077902 intron sima + chr3R 30077962 intron sima + chr3R 30078021 intron sima + chr3R_7_30075001 chr3R_30075001 RAL-85 1166 chr3R 30082990 30083021 chr3R 30083066 30083096 6 76 1.0 1.0 1.0 3.0 106 chr3R 30082990 intron sima + chr3R 30083043 intron sima + chr3R 30083096 intron sima + chr3R_6_30080001 chr3R_30080001 RAL-85 1167 chr3R 30084867 30084879 chr3R 30086334 30086346 hobo 6 1467 0.5 2.5 1.5 2.4 1479 chr3R 30084867 intron sima + chr3R 30085606 intron sima + chr3R 30086346 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-85 1168 chr3R 30147543 30147573 chr3R 30147623 30147655 13 81 2.0 2.0 2.0 4.3 112 chr3R 30147543 intron AdoR - chr3R 30147599 intron AdoR - chr3R 30147655 intron AdoR - chr3R_13_30145001 chr3R_30145001 RAL-85 1169 chr3R 30156866 30156899 chr3R 30156945 30156978 13 79 1.5 5.0 3.2 3.1 112 chr3R 30156866 intron CG11498 - chr3R 30156922 intron CG11498 - chr3R 30156978 intron CG11498 - chr3R_13_30155001 chr3R_30155001 RAL-85 1170 chr3R 30171814 30171836 chr3R 30171927 30171953 4 116 16.0 8.5 12.2 0.3 139 chr3R 30171814 3` UTR Mlc2 - chr3R 30171884 3` UTR Mlc2 - chr3R 30171953 3` UTR Mlc2 - chr3R_4_30170001 chr3R_30170001 RAL-85 1171 chr3R 30224653 30224673 chr3R 30224731 30224751 4 78 1.0 3.5 2.2 1.2 98 chr3R 30224653 intergenic not near genes chr3R 30224702 intergenic not near genes chr3R 30224751 intergenic not near genes chr3R_4_30220001 chr3R_30220001 RAL-85 1172 chr3R 30262577 30262607 chr3R 30262674 30262704 12 97 2.5 1.0 1.8 4.3 127 chr3R 30262577 intergenic not near genes chr3R 30262640 intergenic not near genes chr3R 30262704 intergenic not near genes chr3R_12_30260001 chr3R_30260001 RAL-85 1173 chr3R 30300730 30300744 chr3R 30300811 30300825 8 81 5.0 7.0 6.0 1.1 95 chr3R 30300730 intron hdc + chr3R 30300778 intron hdc + chr3R 30300825 intron hdc + chr3R_8_30300001 chr3R_30300001 RAL-85 1174 chr3R 30458029 30458047 chr3R 30458109 30458127 5 80 1.0 1.5 1.2 2.3 98 chr3R 30458029 intron CG2224 - chr3R 30458078 intron CG2224 - chr3R 30458127 intron CG2224 - chr3R_5_30455001 chr3R_30455001 RAL-85 1175 chr3R 30480476 30480507 chr3R 30482944 30482975 jockey 8 2468 6.0 4.5 5.2 1.3 2499 chr3R 30480476 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482975 intron PH4alphaEFB + chr3R_8_30480001 chr3R_30480001 RAL-85 1176 chr3R 30549015 30549039 chr3R 30549107 30549131 7 92 1.5 2.0 1.8 2.5 116 chr3R 30549015 intron tmod + chr3R 30549073 intron tmod + chr3R 30549131 intron tmod + chr3R_7_30545001 chr3R_30545001 RAL-85 1177 chr3R 30627606 30627635 chr3R 30627686 30627715 11 77 2.0 4.5 3.2 2.6 109 chr3R 30627606 exon CG2267 - chr3R 30627660 exon CG2267 - chr3R 30627715 exon CG2267 - chr3R_11_30625001 chr3R_30625001 RAL-85 1178 chr3R 30679519 30679551 chr3R 30686988 30687020 blood 6 7468 2.0 5.0 3.5 1.3 7501 chr3R 30679519 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687020 intergenic not near genes chr3R_6_30680001 chr3R_30680001 RAL-85 1179 chr3R 30818821 30818842 chr3R 30820386 30820407 1360 4 1565 1.5 1.0 1.2 1.8 1586 chr3R 30818821 intron cindr + chr3R 30819614 intron cindr + chr3R 30820407 intron cindr + chr3R_4_30815001 chr3R_30815001 RAL-85 1180 chr3R 30900521 30900556 chr3R 30900601 30900636 8 80 2.0 1.5 1.8 2.9 115 chr3R 30900521 exon Cyp4c3 + chr3R 30900578 3` UTR Cyp4c3 + chr3R 30900636 3` UTR Cyp4c3 + chr3R_8_30900001 chr3R_30900001 RAL-85 1181 chr3R 30921233 30921252 chr3R 30921313 30921332 7 80 2.5 4.5 3.5 1.6 99 chr3R 30921233 intron Ptx1 + chr3R 30921282 intron Ptx1 + chr3R 30921332 intron Ptx1 + chr3R_7_30920001 chr3R_30920001 RAL-85 1182 chr3R 30973135 30973164 chr3R 30973296 30973325 6 161 1.0 2.5 1.8 2.1 190 chr3R 30973135 intron 5-HT7 - chr3R 30973230 intron 5-HT7 - chr3R 30973325 intron 5-HT7 - chr3R_6_30970001 chr3R_30970001 RAL-85 1183 chr3R 31087107 31087124 chr3R 31087613 31087636 6 508 5.0 6.0 5.5 0.9 529 chr3R 31087107 intergenic not near genes chr3R 31087372 intergenic not near genes chr3R 31087636 intergenic not near genes chr3R_6_31085001 chr3R_31085001 RAL-85 1184 chr3R 31156480 31156512 chr3R 31156562 31156594 14 82 3.0 2.5 2.8 3.7 114 chr3R 31156480 intron Gycbeta100B + chr3R 31156537 intron Gycbeta100B + chr3R 31156594 intron Gycbeta100B + chr3R_14_31155001 chr3R_31155001 RAL-85 1185 chr3R 31245783 31245802 chr3R 31245859 31245889 5 83 2.0 4.5 3.2 1.2 106 chr3R 31245783 intron qless - chr3R 31245836 intron qless - chr3R 31245889 intron qless - chr3R_5_31245001 chr3R_31245001 RAL-85 1186 chr3R 31279388 31279407 chr3R 31285579 31285598 diver 9 6190 3.0 3.5 3.2 2.1 6210 chr3R 31279388 intergenic not near genes chr3R 31282493 intergenic not near genes chr3R 31285598 intergenic not near genes chr3R_9_31280001 chr3R_31280001 RAL-85 1187 chr3R 31413091 31413123 chr3R 31418291 31418323 copia 7 5199 2.5 1.0 1.8 2.5 5232 chr3R 31413091 intron Gprk2 + chr3R 31415707 intron Gprk2 + chr3R 31418323 intron Gprk2 + chr3R_7_31415001 chr3R_31415001 RAL-85 1188 chr3R 31431111 31431119 chr3R 31431195 31431202 4 84 6.5 2.0 4.2 0.8 91 chr3R 31431111 intron Gprk2 + chr3R 31431156 intron Gprk2 + chr3R 31431202 intron Gprk2 + chr3R_4_31430001 chr3R_31430001 RAL-85 1189 chr3R 31442275 31442293 chr3R 31442360 31442378 7 85 3.5 3.0 3.2 1.7 103 chr3R 31442275 intron Gprk2 + chr3R 31442326 intron Gprk2 + chr3R 31442378 intron Gprk2 + chr3R_7_31440001 chr3R_31440001 RAL-85 1190 chr3R 31516969 31516998 chr3R 31517111 31517140 15 142 4.5 3.0 3.8 3.1 171 chr3R 31516969 intergenic not near genes chr3R 31517054 intergenic not near genes chr3R 31517140 intergenic not near genes chr3R_15_31515001 chr3R_31515001 RAL-85 1191 chr3R 31530816 31530847 chr3R 31531143 31531174 9 325 3.0 4.0 3.5 2.0 358 chr3R 31530816 intergenic not near genes chr3R 31530995 intergenic not near genes chr3R 31531174 intergenic not near genes chr3R_9_31530001 chr3R_31530001 RAL-85 1192 chr3R 31538497 31538517 chr3R 31538575 31538595 4 78 3.0 0.5 1.8 1.4 98 chr3R 31538497 intergenic not near genes chr3R 31538546 intergenic not near genes chr3R 31538595 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-85 1193 chr3R 31637877 31637893 chr3R 31637965 31637981 4 88 1.0 3.5 2.2 1.2 104 chr3R 31637877 intron kek6 + chr3R 31637929 intron kek6 + chr3R 31637981 intron kek6 + chr3R_4_31635001 chr3R_31635001 RAL-85 1194 chr3R 31670615 31670630 chr3R 31670709 31670724 4 94 1.0 3.0 2.0 1.3 109 chr3R 31670615 intron CG1815 + chr3R 31670670 intron CG1815 + chr3R 31670724 intron CG1815 + chr3R_4_31670001 chr3R_31670001 RAL-85 1195 chr3R 31691530 31691560 chr3R 31696296 31696304 Doc 14 4759 4.5 6.0 5.2 2.3 4774 chr3R 31691530 intergenic not near genes chr3R 31693917 intergenic not near genes chr3R 31696304 intergenic not near genes chr3R_14_31690001 chr3R_31690001 RAL-85 1196 chr3R 31699723 31699747 chr3R 31699803 31699828 8 80 4.0 5.5 4.8 1.4 105 chr3R 31699723 intergenic not near genes chr3R 31699776 intergenic not near genes chr3R 31699828 intergenic not near genes chr3R_8_31695001 chr3R_31695001 RAL-85 1197 chr3R 31831541 31831566 chr3R 31831620 31831645 12 79 5.5 4.5 5.0 2.0 104 chr3R 31831541 intron RhoGAP100F + chr3R 31831593 intron RhoGAP100F + chr3R 31831645 intron RhoGAP100F + chr3R_12_31830001 chr3R_31830001 RAL-85 1198 chr3R 31870653 31870679 chr3R 31870744 31870770 7 91 2.0 5.5 3.8 1.5 117 chr3R 31870653 intron heph - chr3R 31870712 intron heph - chr3R 31870770 intron heph - chr3R_7_31870001 chr3R_31870001 RAL-85 1199 chr3R 31925692 31925719 chr3R 31925768 31925795 6 76 2.5 3.0 2.8 1.6 103 chr3R 31925692 intron heph - chr3R 31925744 intron heph - chr3R 31925795 intron heph - chr3R_6_31925001 chr3R_31925001 RAL-85 1200 chr3R 31949502 31949527 chr3R 31949588 31949602 6 84 4.5 2.0 3.2 1.4 100 chr3R 31949502 intron heph - chr3R 31949552 intron heph - chr3R 31949602 intron heph - chr3R_6_31945001 chr3R_31945001 RAL-85 1201 chr3R 31997998 31998024 chr3R 32005468 32005494 blood 6 7470 1.0 4.5 2.8 1.6 7496 chr3R 31997998 intron heph - chr3R 32001746 intron heph - chr3R 32005494 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-85 1202 chr3R 32022334 32022355 chr3R 32022436 32022457 11 102 1.5 4.0 2.8 2.9 123 chr3R 32022334 5` UTR CR45557 + chr3R 32022396 5` UTR CR45557 + chr3R 32022457 5` UTR CR45557 + chr3R_11_32020001 chr3R_32020001 RAL-85 1203 chr4 76494 76508 chr4 81937 81951 I-element 5 5443 2.0 0.0 1.0 2.5 5457 chr4 76494 intron pan + chr4 79222 intron pan + chr4 81951 intron pan + chr4_5_75001 chr4_75001 RAL-85 1204 chr4 671615 671638 chr4 680198 680221 Tirant 8 8583 1.5 4.0 2.8 2.1 8606 chr4 671615 intron CG11360 + chr4 675918 intron CG11360 + chr4 680221 intron CG11360 + chr4_8_675001 chr4_675001 RAL-85 1205 chr4 959623 959657 chr4 959802 959836 5 179 1.0 0.5 0.8 2.8 213 chr4 959623 intergenic CR44030 +,CR45201 - chr4 959730 5` UTR CR44030 + chr4 959836 5` UTR CR44030 + chr4_5_955001 chr4_955001 RAL-85 1206 chrX 551420 551454 chrX 558982 559016 412 9 7562 4.5 1.5 3.0 2.2 7596 chrX 551420 intron Appl + chrX 555218 intron Appl + chrX 559016 intron Appl + chrX_9_555001 chrX_555001 RAL-85 1207 chrX 602812 602841 chrX 602912 602941 8 100 3.0 1.0 2.0 2.7 129 chrX 602812 intron CG13366 - chrX 602876 intron CG13366 - chrX 602941 intron CG13366 - chrX_8_600001 chrX_600001 RAL-85 1208 chrX 680840 680868 chrX 680923 680951 8 83 3.5 2.0 2.8 2.1 111 chrX 680840 intergenic not near genes chrX 680896 intergenic not near genes chrX 680951 intergenic not near genes chrX_8_680001 chrX_680001 RAL-85 1209 chrX 706810 706827 chrX 707174 707191 8 364 0.0 6.0 3.0 2.0 381 chrX 706810 intron sdk + chrX 707000 intron sdk + chrX 707191 intron sdk + chrX_8_705001 chrX_705001 RAL-85 1210 chrX 778126 778155 chrX 778216 778245 9 90 7.0 1.0 4.0 1.8 119 chrX 778126 intron fz3 + chrX 778186 intron fz3 + chrX 778245 intron fz3 + chrX_9_775001 chrX_775001 RAL-85 1211 chrX 868499 868518 chrX 868575 868593 5 76 2.0 7.0 4.5 0.9 94 chrX 868499 intron CG43867 - chrX 868546 intron CG43867 - chrX 868593 intron CG43867 - chrX_5_865001 chrX_865001 RAL-85 1212 chrX 906702 906720 chrX 908491 908509 S-element 12 1788 2.0 5.5 3.8 2.5 1807 chrX 906702 intron CG43867 - chrX 907606 intron CG43867 - chrX 908509 intron CG43867 - chrX_12_905001 chrX_905001 RAL-85 1213 chrX 1024450 1024465 chrX 1024532 1024547 7 82 1.5 3.0 2.2 2.2 97 chrX 1024450 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1024498 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1024547 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX_7_1020001 chrX_1020001 RAL-85 1214 chrX 1169753 1169789 chrX 1169838 1169870 20 84 1.0 2.5 1.8 7.1 117 chrX 1169753 intergenic not near genes chrX 1169812 intergenic not near genes chrX 1169870 intergenic not near genes chrX_20_1165001 chrX_1165001 RAL-85 1215 chrX 1253730 1253755 chrX 1253812 1253837 6 82 4.5 2.0 3.2 1.4 107 chrX 1253730 intron Atf3 - chrX 1253784 intron Atf3 - chrX 1253837 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-85 1216 chrX 1308122 1308146 chrX 1308206 1308230 11 84 1.0 1.5 1.2 5.0 108 chrX 1308122 intron DAAM - chrX 1308176 intron DAAM - chrX 1308230 intron DAAM - chrX_11_1305001 chrX_1305001 RAL-85 1217 chrX 1518038 1518059 chrX 1523440 1523461 jockey 5 5399 4.0 3.0 3.5 1.1 5423 chrX 1518038 intergenic inc + chrX 1520750 intergenic not near genes chrX 1523461 intergenic not near genes chrX_5_1520001 chrX_1520001 RAL-85 1218 chrX 1627983 1628003 chrX 1635451 1635455 gtwin 7 7466 2.0 2.0 2.0 2.3 7472 chrX 1627983 intron,intron Mur2B -,br + chrX 1631719 intron,intron Mur2B -,br + chrX 1635455 intron,intron Mur2B -,br + chrX_7_1630001 chrX_1630001 RAL-85 1219 chrX 1954885 1954915 chrX 1962825 1962849 Stalker2 4 7934 2.5 2.5 2.5 1.1 7964 chrX 1954885 intron Hr4 + chrX 1958867 intron Hr4 + chrX 1962849 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-85 1220 chrX 2146653 2146682 chrX 2146745 2146775 12 91 3.5 4.5 4.0 2.4 122 chrX 2146653 intron Pgd + chrX 2146714 intron Pgd + chrX 2146775 intron Pgd + chrX_12_2145001 chrX_2145001 RAL-85 1221 chrX 2397923 2397935 chrX 2398017 2398024 4 93 2.5 0.0 1.2 1.8 101 chrX 2397923 intergenic not near genes chrX 2397974 intergenic not near genes chrX 2398024 intergenic not near genes chrX_4_2395001 chrX_2395001 RAL-85 1222 chrX 2399841 2399859 chrX 2408194 2408205 roo 4 8351 6.0 0.0 3.0 1.0 8364 chrX 2399841 intergenic not near genes chrX 2404023 intergenic not near genes chrX 2408205 intergenic not near genes chrX_4_2400001 chrX_2400001 RAL-85 1223 chrX 2578815 2578827 chrX 2578919 2578931 4 104 4.5 1.5 3.0 1.0 116 chrX 2578815 intergenic Pdfr +,Vha36-3 - chrX 2578873 intergenic Vha36-3 -,Pdfr + chrX 2578931 intergenic Vha36-3 -,Pdfr + chrX_4_2575001 chrX_2575001 RAL-85 1224 chrX 2803500 2803517 chrX 2803643 2803659 5 143 3.0 1.0 2.0 1.7 159 chrX 2803500 intron kirre + chrX 2803580 intron kirre + chrX 2803659 intron kirre + chrX_5_2800001 chrX_2800001 RAL-85 1225 chrX 2972032 2972045 chrX 2972172 2972185 4 140 1.5 4.5 3.0 1.0 153 chrX 2972032 intron,intron kirre +,rst - chrX 2972108 intron,intron kirre +,rst - chrX 2972185 intron,intron kirre +,rst - chrX_4_2970001 chrX_2970001 RAL-85 1226 chrX 3109445 3109465 chrX 3109522 3109542 5 77 1.0 2.0 1.5 2.0 97 chrX 3109445 intron kirre + chrX 3109494 intron kirre + chrX 3109542 intron kirre + chrX_5_3105001 chrX_3105001 RAL-85 1227 chrX 3120080 3120098 chrX 3120147 3120173 8 73 0.0 2.0 1.0 4.0 93 chrX 3120080 intron kirre + chrX 3120126 intron kirre + chrX 3120173 intron kirre + chrX_8_3120001 chrX_3120001 RAL-85 1228 chrX 3203463 3203495 chrX 3203661 3203694 9 198 1.5 1.5 1.5 3.6 231 chrX 3203463 intron dnc + chrX 3203578 intron dnc + chrX 3203694 intron dnc + chrX_9_3200001 chrX_3200001 RAL-85 1229 chrX 3493095 3493117 chrX 3502254 3502276 roo 5 9159 2.5 2.0 2.2 1.6 9181 chrX 3493095 intron,intron CR44999 +,Gas8 - chrX 3497686 intron,intron CR44999 +,Gas8 - chrX 3502276 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-85 1230 chrX 3597568 3597580 chrX 3619736 3619748 roo 6 22168 3.0 3.5 3.2 1.4 22180 chrX 3597568 intron AstA-R1 + chrX 3608658 intron AstA-R1 + chrX 3619748 intron AstA-R1 + chrX_6_3605001 chrX_3605001 RAL-85 1231 chrX 3630545 3630574 chrX 3630621 3630650 8 76 1.5 1.5 1.5 3.2 105 chrX 3630545 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630650 intron AstA-R1 + chrX_8_3630001 chrX_3630001 RAL-85 1232 chrX 3703714 3703727 chrX 3703802 3703815 4 88 0.5 0.5 0.5 2.7 101 chrX 3703714 intergenic CR45102 + chrX 3703764 intergenic CR45102 + chrX 3703815 intergenic not near genes chrX_4_3700001 chrX_3700001 RAL-85 1233 chrX 3726767 3726795 chrX 3730164 3730192 NOF 4 3397 1.0 1.0 1.0 2.0 3425 chrX 3726767 intron tlk + chrX 3728480 intron tlk + chrX 3730192 intron tlk + chrX_4_3725001 chrX_3725001 RAL-85 1234 chrX 3881271 3881292 chrX 3881407 3881431 9 139 3.0 0.5 1.8 3.2 160 chrX 3881271 intron VhaAC39-1 + chrX 3881351 intron VhaAC39-1 + chrX 3881431 intron VhaAC39-1 + chrX_9_3880001 chrX_3880001 RAL-85 1235 chrX 3986861 3986895 chrX 3994494 3994528 412 6 7632 2.5 2.0 2.2 1.9 7667 chrX 3986861 intergenic not near genes chrX 3990694 intergenic not near genes chrX 3994528 intergenic not near genes chrX_6_3990001 chrX_3990001 RAL-85 1236 chrX 4047470 4047496 chrX 4047583 4047606 9 113 4.5 2.0 3.2 2.1 136 chrX 4047470 intergenic CR45482 - chrX 4047538 intergenic CR45482 - chrX 4047606 3` UTR CR45482 - chrX_9_4045001 chrX_4045001 RAL-85 1237 chrX 4048504 4048517 chrX 4048580 4048593 5 75 0.5 2.0 1.2 2.3 89 chrX 4048504 3` UTR CR45482 - chrX 4048548 3` UTR CR45482 - chrX 4048593 3` UTR CR45482 - chrX_5_4045001 chrX_4045001 RAL-85 1238 chrX 4157890 4157920 chrX 4164925 4164955 297 4 7035 3.0 1.0 2.0 1.3 7065 chrX 4157890 intron Fas2 - chrX 4161422 intron Fas2 - chrX 4164955 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-85 1239 chrX 4525337 4525359 chrX 4525433 4525455 9 96 3.0 4.5 3.8 1.9 118 chrX 4525337 intron CR32773 - chrX 4525396 intron CR32773 - chrX 4525455 intron CR32773 - chrX_9_4525001 chrX_4525001 RAL-85 1240 chrX 4638650 4638661 chrX 4638784 4638798 5 136 3.5 2.5 3.0 1.2 148 chrX 4638650 exon pon + chrX 4638724 3` UTR pon + chrX 4638798 3` UTR pon + chrX_5_4635001 chrX_4635001 RAL-85 1241 chrX 4693762 4693780 chrX 4693855 4693875 5 94 0.5 1.5 1.0 2.5 113 chrX 4693762 intron ctp + chrX 4693818 intron ctp + chrX 4693875 intron ctp + chrX_5_4690001 chrX_4690001 RAL-85 1242 chrX 4763250 4763266 chrX 4763738 4763754 Stalker4 5 488 3.5 1.5 2.5 1.4 504 chrX 4763250 intergenic not near genes chrX 4763502 intergenic not near genes chrX 4763754 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-85 1243 chrX 4792388 4792398 chrX 4792821 4792831 jockey 4 433 3.5 6.5 5.0 0.7 443 chrX 4792388 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792831 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-85 1244 chrX 4827988 4828001 chrX 4835340 4835372 Stalker4 6 7363 2.5 2.0 2.2 1.9 7384 chrX 4827988 intergenic not near genes chrX 4831680 intergenic not near genes chrX 4835372 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-85 1245 chrX 4885772 4885807 chrX 4885865 4885900 11 87 1.5 3.0 2.2 3.4 128 chrX 4885772 intron CG42594 + chrX 4885836 intron CG42594 + chrX 4885900 intron CG42594 + chrX_11_4885001 chrX_4885001 RAL-85 1246 chrX 5220392 5220423 chrX 5220633 5220646 4 236 0.0 2.5 1.2 1.8 254 chrX 5220392 intron,intron CG15465 +,rg + chrX 5220519 intron,intron CG15465 +,rg + chrX 5220646 intron,intron CG15465 +,rg + chrX_4_5220001 chrX_5220001 RAL-85 1247 chrX 5345446 5345466 chrX 5345558 5345578 4 112 1.5 0.5 1.0 2.0 132 chrX 5345446 intron SK + chrX 5345512 intron SK + chrX 5345578 intron SK + chrX_4_5345001 chrX_5345001 RAL-85 1248 chrX 5349282 5349306 chrX 5349359 5349383 8 77 1.0 1.5 1.2 3.6 101 chrX 5349282 intron SK + chrX 5349332 intron SK + chrX 5349383 intron SK + chrX_8_5345001 chrX_5345001 RAL-85 1249 chrX 5435164 5435173 chrX 5435244 5435253 4 80 7.5 5.0 6.2 0.6 89 chrX 5435164 intron CR44471 + chrX 5435208 intron CR44471 + chrX 5435253 intron CR44471 + chrX_4_5435001 chrX_5435001 RAL-85 1250 chrX 5473585 5473612 chrX 5473661 5473682 5 75 1.5 1.5 1.5 2.0 97 chrX 5473585 intron SPR + chrX 5473634 intron SPR + chrX 5473682 intron SPR + chrX_5_5470001 chrX_5470001 RAL-85 1251 chrX 5725043 5725058 chrX 5725140 5725161 8 102 1.5 0.5 1.0 4.0 118 chrX 5725043 intron CG32758 - chrX 5725102 intron CG32758 - chrX 5725161 intron CG32758 - chrX_8_5725001 chrX_5725001 RAL-85 1252 chrX 5786576 5786604 chrX 5786659 5786687 5 83 3.0 0.5 1.8 1.8 111 chrX 5786576 intron CG42699 + chrX 5786632 intron CG42699 + chrX 5786687 intron CG42699 + chrX_5_5785001 chrX_5785001 RAL-85 1253 chrX 5792569 5792752 chrX 5792703 5792817 4 95 6.0 1.0 3.5 0.9 248 chrX 5792569 exon CG12239 + chrX 5792693 exon CG12239 + chrX 5792817 exon CG12239 + chrX_4_5790001 chrX_5790001 RAL-85 1254 chrX 5883812 5883827 chrX 5884053 5884068 pogo 5 241 2.5 2.0 2.2 1.6 256 chrX 5883812 intron CR45668 - chrX 5883940 intron CR45668 - chrX 5884068 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-85 1255 chrX 6037551 6037582 chrX 6037734 6037765 7 183 1.0 0.5 0.8 3.9 214 chrX 6037551 intron rux - chrX 6037658 intron rux - chrX 6037765 5` UTR rux - chrX_7_6035001 chrX_6035001 RAL-85 1256 chrX 6041102 6041119 chrX 6041184 6041201 4 82 0.0 2.0 1.0 2.0 99 chrX 6041102 intron CG5937 + chrX 6041152 intron CG5937 + chrX 6041201 intron CG5937 + chrX_4_6040001 chrX_6040001 RAL-85 1257 chrX 6320058 6320074 chrX 6320166 6320182 6 108 1.5 3.5 2.5 1.7 124 chrX 6320058 intron CG15894 + chrX 6320120 intron CG15894 + chrX 6320182 intron CG15894 + chrX_6_6320001 chrX_6320001 RAL-85 1258 chrX 6335218 6335231 chrX 6337728 6337741 Tirant 4 2510 0.0 1.5 0.8 2.2 2523 chrX 6335218 intergenic not near genes chrX 6336480 intergenic not near genes chrX 6337741 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-85 1259 chrX 6374698 6374726 chrX 6374839 6374867 6 138 3.0 0.0 1.5 2.4 169 chrX 6374698 intergenic not near genes chrX 6374782 intergenic not near genes chrX 6374867 intergenic not near genes chrX_6_6370001 chrX_6370001 RAL-85 1260 chrX 6392879 6392897 chrX 6397644 6397662 Doc 5 4765 3.0 5.5 4.2 1.0 4783 chrX 6392879 intergenic not near genes chrX 6395270 intergenic not near genes chrX 6397662 intergenic not near genes chrX_5_6395001 chrX_6395001 RAL-85 1261 chrX 6457435 6457445 chrX 6457516 6457526 5 81 8.5 2.5 5.5 0.8 91 chrX 6457435 intron CG42340 - chrX 6457480 intron CG42340 - chrX 6457526 intron CG42340 - chrX_5_6455001 chrX_6455001 RAL-85 1262 chrX 6525983 6526015 chrX 6526071 6526101 5 87 3.0 0.5 1.8 1.8 118 chrX 6525983 3` UTR CG3918 + chrX 6526042 3` UTR CG3918 + chrX 6526101 3` UTR CG3918 + chrX_5_6525001 chrX_6525001 RAL-85 1263 chrX 6562824 6562847 chrX 6571302 6571318 Tirant 8 8480 1.5 4.5 3.0 2.0 8494 chrX 6562824 intron CG34417 + chrX 6567071 intron CG34417 + chrX 6571318 intron CG34417 + chrX_8_6565001 chrX_6565001 RAL-85 1264 chrX 6681157 6681166 chrX 6683112 6683121 4 1956 15.0 16.5 15.8 0.2 1964 chrX 6681157 exon l(1)G0255 + chrX 6682139 intron CG4095 + chrX 6683121 exon CG4095 + chrX_4_6680001 chrX_6680001 RAL-85 1265 chrX 6897567 6897707 chrX 6897645 6897815 11 101 2.0 2.0 2.0 3.7 248 chrX 6897567 intergenic not near genes chrX 6897691 intergenic not near genes chrX 6897815 intergenic not near genes chrX_11_6895001 chrX_6895001 RAL-85 1266 chrX 6927687 6927717 chrX 6927819 6927830 6 129 2.0 1.5 1.8 2.1 143 chrX 6927687 intron CG14431 + chrX 6927758 intron CG14431 + chrX 6927830 intron CG14431 + chrX_6_6925001 chrX_6925001 RAL-85 1267 chrX 7023604 7023628 chrX 7030991 7031018 Tabor 7 7389 4.0 1.0 2.5 2.0 7414 chrX 7023604 intron CG12541 - chrX 7027311 intron CG12541 - chrX 7031018 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-85 1268 chrX 7125247 7125266 chrX 7134406 7134425 roo 4 9158 1.0 2.5 1.8 1.4 9178 chrX 7125247 intergenic not near genes chrX 7129836 intergenic not near genes chrX 7134425 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-85 1269 chrX 7488025 7488048 chrX 7488151 7488164 13 126 3.0 6.0 4.5 2.4 139 chrX 7488025 5` UTR CR45534 + chrX 7488094 5` UTR CR45534 + chrX 7488164 5` UTR CR45534 + chrX_13_7485001 chrX_7485001 RAL-85 1270 chrX 7702897 7702922 chrX 7703336 7703361 jockey 6 439 2.5 1.0 1.8 2.1 464 chrX 7702897 intron CHES-1-like - chrX 7703129 intron CHES-1-like - chrX 7703361 intron CHES-1-like - chrX_6_7700001 chrX_7700001 RAL-85 1271 chrX 7845742 7845746 chrX 7847233 7847237 hopper2 4 1491 5.0 2.5 3.8 0.8 1495 chrX 7845742 intergenic not near genes chrX 7846490 intergenic not near genes chrX 7847237 intergenic not near genes chrX_4_7845001 chrX_7845001 RAL-85 1272 chrX 7863212 7863223 chrX 7863295 7863305 5 83 10.5 0.0 5.2 0.8 93 chrX 7863212 intergenic not near genes chrX 7863258 intergenic not near genes chrX 7863305 intergenic not near genes chrX_5_7860001 chrX_7860001 RAL-85 1273 chrX 8092285 8092310 chrX 8092370 8092395 6 85 1.5 0.5 1.0 3.0 110 chrX 8092285 intron Ubc-E2H - chrX 8092340 intron Ubc-E2H - chrX 8092395 intron Ubc-E2H - chrX_6_8090001 chrX_8090001 RAL-85 1274 chrX 8227143 8227159 chrX 8227230 8227248 4 89 4.0 3.0 3.5 0.9 105 chrX 8227143 intron sdt + chrX 8227196 intron sdt + chrX 8227248 intron sdt + chrX_4_8225001 chrX_8225001 RAL-85 1275 chrX 8302367 8302382 chrX 8302464 8302477 5 97 1.5 8.0 4.8 0.9 110 chrX 8302367 intron nAChRalpha3 - chrX 8302422 intron nAChRalpha3 - chrX 8302477 intron nAChRalpha3 - chrX_5_8300001 chrX_8300001 RAL-85 1276 chrX 8371152 8371163 chrX 8371314 8371321 7 160 3.5 0.0 1.8 2.5 169 chrX 8371152 intergenic not near genes chrX 8371236 intergenic not near genes chrX 8371321 intergenic not near genes chrX_7_8370001 chrX_8370001 RAL-85 1277 chrX 8730449 8730464 chrX 8730525 8730540 7 76 0.0 4.5 2.2 2.2 91 chrX 8730449 intergenic not near genes chrX 8730494 intergenic not near genes chrX 8730540 intergenic not near genes chrX_7_8730001 chrX_8730001 RAL-85 1278 chrX 8922326 8922357 chrX 8922760 8922791 jockey 11 434 4.0 2.0 3.0 2.8 465 chrX 8922326 intron rdgA + chrX 8922558 intron rdgA + chrX 8922791 intron rdgA + chrX_11_8920001 chrX_8920001 RAL-85 1279 chrX 9337941 9337972 chrX 9338033 9338033 11 89 2.0 4.5 3.2 2.6 92 chrX 9337941 intron CG34449 - chrX 9337987 intron CG34449 - chrX 9338033 intron CG34449 - chrX_11_9335001 chrX_9335001 RAL-85 1280 chrX 9353176 9353196 chrX 9354190 9354213 10 1016 1.5 1.5 1.5 4.0 1037 chrX 9353176 intron CG34449 - chrX 9353694 intron CG34449 - chrX 9354213 intron CG34449 - chrX_10_9350001 chrX_9350001 RAL-85 1281 chrX 9463873 9463888 chrX 9464081 9464098 6 210 1.5 2.5 2.0 2.0 225 chrX 9463873 intron mgl - chrX 9463986 intron mgl - chrX 9464098 intron mgl - chrX_6_9460001 chrX_9460001 RAL-85 1282 chrX 9543403 9543423 chrX 9543482 9543502 4 79 0.0 2.0 1.0 2.0 99 chrX 9543403 intron CG32700 - chrX 9543452 intron CG32700 - chrX 9543502 intron CG32700 - chrX_4_9540001 chrX_9540001 RAL-85 1283 chrX 9575789 9575824 chrX 9576113 9576148 mdg3 18 324 3.5 3.0 3.2 4.3 359 chrX 9575789 intron,exon CG32699 -,CG42395 - chrX 9575968 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_18_9575001 chrX_9575001 RAL-85 1284 chrX 9617006 9617037 chrX 9617085 9617093 6 71 1.5 0.0 0.8 3.3 87 chrX 9617006 intron CG42797 + chrX 9617050 intron CG42797 + chrX 9617093 intron CG42797 + chrX_6_9615001 chrX_9615001 RAL-85 1285 chrX 9965422 9965453 chrX 9965523 9965554 16 101 4.5 4.0 4.2 3.1 132 chrX 9965422 exon CG1889 + chrX 9965488 intron CG1889 + chrX 9965554 intron CG1889 + chrX_16_9965001 chrX_9965001 RAL-85 1286 chrX 10138218 10138231 chrX 10145722 10145735 412 4 7504 3.5 2.5 3.0 1.0 7517 chrX 10138218 intron,intron RhoU +,CR44894 - chrX 10141976 intron,intron RhoU +,CR44894 - chrX 10145735 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-85 1287 chrX 10282173 10282186 chrX 10282278 10282291 4 105 0.0 5.0 2.5 1.1 118 chrX 10282173 intron alpha-Man-I - chrX 10282232 intron alpha-Man-I - chrX 10282291 intron alpha-Man-I - chrX_4_10280001 chrX_10280001 RAL-85 1288 chrX 10287164 10287197 chrX 10287254 10287287 7 90 0.5 0.0 0.2 5.8 123 chrX 10287164 intron alpha-Man-I - chrX 10287226 intron alpha-Man-I - chrX 10287287 intron alpha-Man-I - chrX_7_10285001 chrX_10285001 RAL-85 1289 chrX 10330425 10330673 chrX 10330855 10330888 5 303 9.0 7.0 8.0 0.6 463 chrX 10330425 exon CG15306 - chrX 10330656 exon CG15306 - chrX 10330888 exon CG15306 - chrX_5_10330001 chrX_10330001 RAL-85 1290 chrX 10550334 10550359 chrX 10550412 10550437 7 78 1.5 0.5 1.0 3.5 103 chrX 10550334 intron spri - chrX 10550386 intron spri - chrX 10550437 intron spri - chrX_7_10550001 chrX_10550001 RAL-85 1291 chrX 10550856 10550886 chrX 10552323 10552353 hobo 14 1466 1.5 4.0 2.8 3.7 1497 chrX 10550856 intron spri - chrX 10551604 intron spri - chrX 10552353 intron spri - chrX_14_10550001 chrX_10550001 RAL-85 1292 chrX 10686069 10686083 chrX 10691206 10691214 roo 4 5136 0.5 1.0 0.8 2.2 5145 chrX 10686069 intron X11Lbeta + chrX 10688642 intron X11Lbeta + chrX 10691214 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-85 1293 chrX 10772674 10772689 chrX 10772757 10772772 Tirant 4 83 3.5 0.5 2.0 1.3 98 chrX 10772674 intron CG15211 + chrX 10772723 intron CG15211 + chrX 10772772 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-85 1294 chrX 11034302 11034313 chrX 11034632 11034643 5 330 0.5 2.0 1.2 2.3 341 chrX 11034302 intron CG42339 - chrX 11034472 intron CG42339 - chrX 11034643 intron CG42339 - chrX_5_11030001 chrX_11030001 RAL-85 1295 chrX 11312059 11312093 chrX 11319412 11319439 Stalker2 14 7351 4.5 5.0 4.8 2.4 7380 chrX 11312059 intergenic not near genes chrX 11315749 intergenic not near genes chrX 11319439 intergenic not near genes chrX_14_11315001 chrX_11315001 RAL-85 1296 chrX 11464800 11464829 chrX 11464879 11464908 4 79 2.5 0.5 1.5 1.6 108 chrX 11464800 intron CG43155 + chrX 11464854 intron CG43155 + chrX 11464908 intron CG43155 + chrX_4_11460001 chrX_11460001 RAL-85 1297 chrX 11786602 11786627 chrX 11786705 11786725 5 103 3.5 1.0 2.2 1.6 123 chrX 11786602 intergenic not near genes chrX 11786664 intergenic not near genes chrX 11786725 intergenic not near genes chrX_5_11785001 chrX_11785001 RAL-85 1298 chrX 11936572 11936584 chrX 11936671 11936683 5 99 0.0 4.5 2.2 1.6 111 chrX 11936572 intron cac - chrX 11936628 intron cac - chrX 11936683 intron cac - chrX_5_11935001 chrX_11935001 RAL-85 1299 chrX 12041236 12041263 chrX 12041668 12041699 13 433 3.0 6.0 4.5 2.4 463 chrX 12041236 intergenic not near genes chrX 12041468 intergenic not near genes chrX 12041699 intergenic not near genes chrX_13_12040001 chrX_12040001 RAL-85 1300 chrX 12043841 12043858 chrX 12043929 12043947 4 88 0.5 1.0 0.8 2.2 106 chrX 12043841 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043894 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043947 5` UTR,5` UTR CR43960 +,Ten-a + chrX_4_12040001 chrX_12040001 RAL-85 1301 chrX 12073747 12073776 chrX 12074021 12074048 6 274 1.5 2.5 2.0 2.0 301 chrX 12073747 intron,intron CR43960 +,Ten-a + chrX 12073898 intron,intron CR43960 +,Ten-a + chrX 12074048 intron,intron CR43960 +,Ten-a + chrX_6_12070001 chrX_12070001 RAL-85 1302 chrX 12082778 12082813 chrX 12082950 12082985 9 171 3.5 1.5 2.5 2.6 207 chrX 12082778 intron,intron CR43960 +,Ten-a + chrX 12082882 intron,intron CR43960 +,Ten-a + chrX 12082985 intron,intron CR43960 +,Ten-a + chrX_9_12080001 chrX_12080001 RAL-85 1303 chrX 12094035 12094068 chrX 12094127 12094160 9 91 2.0 1.0 1.5 3.6 125 chrX 12094035 intron,intron CR43960 +,Ten-a + chrX 12094098 intron,intron CR43960 +,Ten-a + chrX 12094160 intron,intron CR43960 +,Ten-a + chrX_9_12090001 chrX_12090001 RAL-85 1304 chrX 12168142 12168166 chrX 12173584 12173606 I-element 4 5442 2.5 1.5 2.0 1.3 5464 chrX 12168142 intron Ten-a + chrX 12170874 intron Ten-a + chrX 12173606 intron Ten-a + chrX_4_12170001 chrX_12170001 RAL-85 1305 chrX 12176738 12176767 chrX 12176812 12176843 13 76 2.5 3.0 2.8 3.4 105 chrX 12176738 intron,3` UTR Ten-a +,CG1924 - chrX 12176790 intron,3` UTR Ten-a +,CG1924 - chrX 12176843 intron,3` UTR Ten-a +,CG1924 - chrX_13_12175001 chrX_12175001 RAL-85 1306 chrX 12370003 12370029 chrX 12370220 12370246 9 217 2.5 2.0 2.2 2.8 243 chrX 12370003 intergenic not near genes chrX 12370124 intergenic not near genes chrX 12370246 intergenic not near genes chrX_9_12370001 chrX_12370001 RAL-85 1307 chrX 12375491 12375503 chrX 12375589 12375601 6 98 2.5 4.0 3.2 1.4 110 chrX 12375491 intergenic Ir11a - chrX 12375546 intergenic Ir11a - chrX 12375601 exon Ir11a - chrX_6_12375001 chrX_12375001 RAL-85 1308 chrX 12557157 12557165 chrX 12557233 12557241 8 76 4.0 6.5 5.2 1.3 84 chrX 12557157 intron CG43921 - chrX 12557199 intron CG43921 - chrX 12557241 intron CG43921 - chrX_8_12555001 chrX_12555001 RAL-85 1309 chrX 13106261 13106275 chrX 13106345 13106359 7 84 2.0 2.0 2.0 2.3 98 chrX 13106261 intron CG43313 - chrX 13106310 intron CG43313 - chrX 13106359 intron CG43313 - chrX_7_13105001 chrX_13105001 RAL-85 1310 chrX 13172355 13172381 chrX 13172431 13172457 10 76 0.5 1.5 1.0 5.0 102 chrX 13172355 exon CG34411 - chrX 13172406 intron CG34411 - chrX 13172457 intron CG34411 - chrX_10_13170001 chrX_13170001 RAL-85 1311 chrX 13485700 13485719 chrX 13485791 13485795 4 87 4.0 2.5 3.2 1.0 95 chrX 13485700 intron Neto + chrX 13485748 intron Neto + chrX 13485795 intron Neto + chrX_4_13485001 chrX_13485001 RAL-85 1312 chrX 13559937 13559968 chrX 13560022 13560053 11 85 2.5 2.0 2.2 3.4 116 chrX 13559937 intergenic not near genes chrX 13559995 intergenic not near genes chrX 13560053 intergenic not near genes chrX_11_13555001 chrX_13555001 RAL-85 1313 chrX 13937984 13938000 chrX 13941253 13941271 I-element 4 3270 1.0 0.5 0.8 2.2 3287 chrX 13937984 intron mamo - chrX 13939628 intron mamo - chrX 13941271 intron mamo - chrX_4_13935001 chrX_13935001 RAL-85 1314 chrX 14105034 14105052 chrX 14114177 14114203 roo 7 9149 3.0 3.5 3.2 1.7 9169 chrX 14105034 intergenic not near genes chrX 14109618 intergenic not near genes chrX 14114203 5` UTR CR44657 + chrX_7_14105001 chrX_14105001 RAL-85 1315 chrX 14131491 14131514 chrX 14131572 14131595 8 81 4.0 5.0 4.5 1.5 104 chrX 14131491 intergenic not near genes chrX 14131543 intergenic not near genes chrX 14131595 intergenic not near genes chrX_8_14130001 chrX_14130001 RAL-85 1316 chrX 14333310 14333316 chrX 14333369 14333384 4 65 0.0 4.0 2.0 1.3 74 chrX 14333310 intron dpr8 + chrX 14333347 intron dpr8 + chrX 14333384 intron dpr8 + chrX_4_14330001 chrX_14330001 RAL-85 1317 chrX 14353465 14353468 chrX 14353528 14353549 4 76 2.5 4.0 3.2 1.0 84 chrX 14353465 intron dpr8 + chrX 14353507 intron dpr8 + chrX 14353549 intron dpr8 + chrX_4_14350001 chrX_14350001 RAL-85 1318 chrX 14371807 14371838 chrX 14371887 14371918 7 80 2.0 0.0 1.0 3.5 111 chrX 14371807 intron dpr8 + chrX 14371862 intron dpr8 + chrX 14371918 intron dpr8 + chrX_7_14370001 chrX_14370001 RAL-85 1319 chrX 14818764 14818798 chrX 14823967 14824002 copia 6 5204 2.0 0.0 1.0 3.0 5238 chrX 14818764 intron rut - chrX 14821383 intron rut - chrX 14824002 intron rut - chrX_6_14820001 chrX_14820001 RAL-85 1320 chrX 14825359 14825377 chrX 14825436 14825451 7 76 5.5 3.0 4.2 1.3 92 chrX 14825359 intron rut - chrX 14825405 intron rut - chrX 14825451 intron rut - chrX_7_14825001 chrX_14825001 RAL-85 1321 chrX 14936860 14936889 chrX 14946117 14946146 roo 6 9257 1.0 2.5 1.8 2.1 9286 chrX 14936860 intron pdgy - chrX 14941503 intron pdgy - chrX 14946146 intron pdgy - chrX_6_14940001 chrX_14940001 RAL-85 1322 chrX 14952440 14952452 chrX 14952608 14952620 4 168 5.0 3.5 4.2 0.8 180 chrX 14952440 intron,3` UTR pdgy -,CR44831 - chrX 14952530 intron,3` UTR pdgy -,CR44831 - chrX 14952620 intron,3` UTR pdgy -,CR44831 - chrX_4_14950001 chrX_14950001 RAL-85 1323 chrX 14968085 14968099 chrX 14968164 14968178 4 79 0.5 1.5 1.0 2.0 93 chrX 14968085 intron eag + chrX 14968132 intron eag + chrX 14968178 intron eag + chrX_4_14965001 chrX_14965001 RAL-85 1324 chrX 15358638 15358660 chrX 15358714 15358736 5 76 2.0 2.0 2.0 1.7 98 chrX 15358638 intron acj6 - chrX 15358687 intron acj6 - chrX 15358736 intron acj6 - chrX_5_15355001 chrX_15355001 RAL-85 1325 chrX 15369846 15369859 chrX 15369929 15369942 6 83 2.0 1.5 1.8 2.1 96 chrX 15369846 intron acj6 - chrX 15369894 intron acj6 - chrX 15369942 intron acj6 - chrX_6_15365001 chrX_15365001 RAL-85 1326 chrX 15413049 15413079 chrX 15417350 15417381 Juan 11 4302 5.0 1.5 3.2 2.6 4332 chrX 15413049 intron Cngl - chrX 15415215 intron Cngl - chrX 15417381 intron Cngl - chrX_11_15415001 chrX_15415001 RAL-85 1327 chrX 15529284 15529289 chrX 15529363 15529370 4 80 2.0 4.5 3.2 1.0 86 chrX 15529284 intron Ac13E - chrX 15529327 intron Ac13E - chrX 15529370 intron Ac13E - chrX_4_15525001 chrX_15525001 RAL-85 1328 chrX 15678052 15678068 chrX 15678129 15678145 5 77 0.5 4.0 2.2 1.6 93 chrX 15678052 intergenic CG12708 + chrX 15678098 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-85 1329 chrX 16329436 16329446 chrX 16329519 16329529 5 83 0.0 7.5 3.8 1.0 93 chrX 16329436 intron CG9919 - chrX 16329482 intron CG9919 - chrX 16329529 exon CG9919 - chrX_5_16325001 chrX_16325001 RAL-85 1330 chrX 16529427 16529437 chrX 16529538 16529548 4 111 0.5 2.0 1.2 1.8 121 chrX 16529427 intron para - chrX 16529488 intron para - chrX 16529548 intron para - chrX_4_16525001 chrX_16525001 RAL-85 1331 chrX 16570876 16570900 chrX 16570956 16570979 4 80 1.0 0.0 0.5 2.7 103 chrX 16570876 intron CanA-14F - chrX 16570928 intron CanA-14F - chrX 16570979 intron CanA-14F - chrX_4_16570001 chrX_16570001 RAL-85 1332 chrX 16689634 16689650 chrX 16689711 16689736 11 80 2.0 2.0 2.0 3.7 102 chrX 16689634 intron Sep4 - chrX 16689685 intron Sep4 - chrX 16689736 intron Sep4 - chrX_11_16685001 chrX_16685001 RAL-85 1333 chrX 16690451 16690477 chrX 16690530 16690550 4 76 2.5 2.5 2.5 1.1 99 chrX 16690451 intron Sep4 - chrX 16690500 intron Sep4 - chrX 16690550 intron Sep4 - chrX_4_16690001 chrX_16690001 RAL-85 1334 chrX 16870088 16870095 chrX 16870168 16870177 4 82 2.0 1.5 1.8 1.4 89 chrX 16870088 intron CG13003 - chrX 16870132 intron CG13003 - chrX 16870177 intron CG13003 - chrX_4_16870001 chrX_16870001 RAL-85 1335 chrX 17011777 17011999 chrX 17011853 17012082 20 78 3.0 2.0 2.5 5.7 305 chrX 17011777 intron CG45002 - chrX 17011930 intron CG45002 - chrX 17012082 intron CG45002 - chrX_20_17010001 chrX_17010001 RAL-85 1336 chrX 17319551 17319576 chrX 17319640 17319656 6 88 2.0 4.5 3.2 1.4 105 chrX 17319551 intron B-H2 + chrX 17319604 intron B-H2 + chrX 17319656 intron B-H2 + chrX_6_17315001 chrX_17315001 RAL-85 1337 chrX 17352591 17352623 chrX 17352694 17352726 7 103 0.0 0.5 0.2 5.8 135 chrX 17352591 intergenic not near genes chrX 17352658 intergenic not near genes chrX 17352726 intergenic not near genes chrX_7_17350001 chrX_17350001 RAL-85 1338 chrX 17373370 17373393 chrX 17373468 17373491 5 98 0.5 1.0 0.8 2.8 121 chrX 17373370 intergenic not near genes chrX 17373430 intergenic not near genes chrX 17373491 intergenic not near genes chrX_5_17370001 chrX_17370001 RAL-85 1339 chrX 17556950 17556966 chrX 17557443 17557444 mdg1 4 486 2.5 4.5 3.5 0.9 494 chrX 17556950 intron CG43658 - chrX 17557197 intron CG43658 - chrX 17557444 intron CG43658 - chrX_4_17555001 chrX_17555001 RAL-85 1340 chrX 17680893 17680922 chrX 17680970 17680998 7 75 2.0 3.5 2.8 1.8 105 chrX 17680893 intron chas - chrX 17680946 intron chas - chrX 17680998 intron chas - chrX_7_17680001 chrX_17680001 RAL-85 1341 chrX 17740375 17740403 chrX 17740450 17740478 6 75 3.5 4.5 4.0 1.2 103 chrX 17740375 intron CG42684 + chrX 17740426 intron CG42684 + chrX 17740478 intron CG42684 + chrX_6_17740001 chrX_17740001 RAL-85 1342 chrX 18093660 18093692 chrX 18093866 18093899 10 206 2.5 2.5 2.5 2.9 239 chrX 18093660 5` UTR RhoGAP16F + chrX 18093780 5` UTR RhoGAP16F + chrX 18093899 5` UTR RhoGAP16F + chrX_10_18090001 chrX_18090001 RAL-85 1343 chrX 18122825 18122848 chrX 18122901 18122913 8 75 2.5 1.0 1.8 2.9 88 chrX 18122825 5` UTR CR45606 + chrX 18122869 5` UTR CR45606 + chrX 18122913 5` UTR CR45606 + chrX_8_18120001 chrX_18120001 RAL-85 1344 chrX 18126609 18126828 chrX 18126732 18126905 9 87 0.5 0.5 0.5 6.0 296 chrX 18126609 intron CG32553 - chrX 18126757 intron CG32553 - chrX 18126905 intron CG32553 - chrX_9_18125001 chrX_18125001 RAL-85 1345 chrX 18490044 18490057 chrX 18490199 18490212 6 154 3.5 5.0 4.2 1.2 168 chrX 18490044 intergenic CG15046 - chrX 18490128 intergenic not near genes chrX 18490212 intergenic not near genes chrX_6_18490001 chrX_18490001 RAL-85 1346 chrX 18558776 18558802 chrX 18558858 18558883 4 82 0.0 0.5 0.2 3.3 107 chrX 18558776 intron Bx + chrX 18558830 intron Bx + chrX 18558883 intron Bx + chrX_4_18555001 chrX_18555001 RAL-85 1347 chrX 18645016 18645042 chrX 18645114 18645140 7 98 2.0 0.5 1.2 3.2 124 chrX 18645016 intron Rip11 - chrX 18645078 intron Rip11 - chrX 18645140 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-85 1348 chrX 18896909 18896935 chrX 18896986 18897012 6 77 8.0 4.5 6.2 0.8 103 chrX 18896909 intergenic CG7349 + chrX 18896960 intergenic CG7349 + chrX 18897012 intergenic CG7349 + chrX_6_18895001 chrX_18895001 RAL-85 1349 chrX 18947501 18947533 chrX 18947594 18947626 6 93 1.0 1.0 1.0 3.0 125 chrX 18947501 intron CG43759 + chrX 18947564 intron CG43759 + chrX 18947626 intron CG43759 + chrX_6_18945001 chrX_18945001 RAL-85 1350 chrX 19014359 19014387 chrX 19014438 19014466 7 79 1.5 2.5 2.0 2.3 107 chrX 19014359 intron CG43759 + chrX 19014412 intron CG43759 + chrX 19014466 intron CG43759 + chrX_7_19010001 chrX_19010001 RAL-85 1351 chrX 19020608 19020620 chrX 19020686 19020698 4 78 1.0 0.0 0.5 2.7 90 chrX 19020608 intron CG43759 + chrX 19020653 intron CG43759 + chrX 19020698 intron CG43759 + chrX_4_19020001 chrX_19020001 RAL-85 1352 chrX 19060420 19060437 chrX 19065204 19065221 Doc 4 4784 1.5 1.5 1.5 1.6 4801 chrX 19060420 intron CG14190 + chrX 19062820 intron CG14190 + chrX 19065221 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-85 1353 chrX 19106827 19106843 chrX 19106903 19106918 5 76 2.0 1.5 1.8 1.8 91 chrX 19106827 intergenic not near genes chrX 19106872 intergenic not near genes chrX 19106918 intergenic not near genes chrX_5_19105001 chrX_19105001 RAL-85 1354 chrX 19380169 19380182 chrX 19380411 19380424 pogo 5 242 2.5 2.0 2.2 1.6 255 chrX 19380169 intron kek5 + chrX 19380296 intron kek5 + chrX 19380424 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-85 1355 chrX 19472124 19472154 chrX 19472694 19472724 jockey 6 570 1.0 2.5 1.8 2.1 600 chrX 19472124 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472724 intergenic not near genes chrX_6_19470001 chrX_19470001 RAL-85 1356 chrX 19500561 19500746 chrX 19500638 19500833 6 80 0.0 0.0 0.0 6.0 272 chrX 19500561 intron,intron CG14200 +,Pfrx + chrX 19500697 intron,intron CG14200 +,Pfrx + chrX 19500833 intron,intron CG14200 +,Pfrx + chrX_6_19500001 chrX_19500001 RAL-85 1357 chrX 19593946 19593970 chrX 19594031 19594055 7 85 5.0 5.0 5.0 1.2 109 chrX 19593946 exon CG14205 + chrX 19594000 intron CG14205 + chrX 19594055 intron CG14205 + chrX_7_19590001 chrX_19590001 RAL-85 1358 chrX 19662034 19662054 chrX 19662257 19662277 7 223 1.0 4.5 2.8 1.8 243 chrX 19662034 intron CG14223 - chrX 19662156 intron CG14223 - chrX 19662277 intron CG14223 - chrX_7_19660001 chrX_19660001 RAL-85 1359 chrX 19710075 19710095 chrX 19711861 19711880 S-element 5 1786 2.5 3.5 3.0 1.2 1805 chrX 19710075 intron meso18E - chrX 19710978 intron meso18E - chrX 19711880 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-85 1360 chrX 20020067 20020099 chrX 20020150 20020182 7 83 3.5 1.0 2.2 2.2 115 chrX 20020067 intron Dop2R - chrX 20020124 intron Dop2R - chrX 20020182 intron Dop2R - chrX_7_20020001 chrX_20020001 RAL-85 1361 chrX 20105198 20105229 chrX 20105304 20105332 11 104 32.0 30.5 31.2 0.3 134 chrX 20105198 intergenic not near genes chrX 20105265 intergenic not near genes chrX 20105332 intergenic not near genes chrX_11_20105001 chrX_20105001 RAL-85 1362 chrX 20369319 20369335 chrX 20369403 20369419 7 84 1.5 2.0 1.8 2.5 100 chrX 20369319 intergenic not near genes chrX 20369369 intergenic not near genes chrX 20369419 intergenic not near genes chrX_7_20365001 chrX_20365001 RAL-85 1363 chrX 20377327 20377349 chrX 20378794 20378816 hobo 6 1467 2.5 6.5 4.5 1.1 1489 chrX 20377327 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378816 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-85 1364 chrX 20384270 20384287 chrX 20384353 20384370 5 83 0.0 4.0 2.0 1.7 100 chrX 20384270 intergenic not near genes chrX 20384320 intergenic not near genes chrX 20384370 intergenic not near genes chrX_5_20380001 chrX_20380001 RAL-85 1365 chrX 20443169 20443191 chrX 20443245 20443267 5 76 2.0 0.5 1.2 2.3 98 chrX 20443169 exon CG1695 + chrX 20443218 intron CG1695 + chrX 20443267 intron CG1695 + chrX_5_20440001 chrX_20440001 RAL-85 1366 chrX 20940719 20940756 chrX 20942188 20942225 hobo 16 1469 1.5 3.5 2.5 4.6 1506 chrX 20940719 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942225 intergenic not near genes chrX_16_20940001 chrX_20940001 RAL-85 1367 chrX 20981025 20981057 chrX 20981128 20981160 5 103 0.5 1.5 1.0 2.5 135 chrX 20981025 intergenic not near genes chrX 20981092 intergenic not near genes chrX 20981160 intergenic not near genes chrX_5_20980001 chrX_20980001 RAL-85 1368 chrX 21065086 21065113 chrX 21065166 21065193 10 80 1.0 5.5 3.2 2.4 107 chrX 21065086 intron,intron bves +,CG32512 - chrX 21065140 intron,intron bves +,CG32512 - chrX 21065193 intron,intron bves +,CG32512 - chrX_10_21065001 chrX_21065001 RAL-85 1369 chrX 21221304 21221326 chrX 21221434 21221456 4 130 2.0 4.5 3.2 1.0 152 chrX 21221304 intron CG32521 - chrX 21221380 intron CG32521 - chrX 21221456 intron CG32521 - chrX_4_21220001 chrX_21220001 RAL-85 1370 chrX 21345122 21345145 chrX 21345203 21345225 12 81 2.5 3.5 3.0 3.0 103 chrX 21345122 intergenic fliI +,dod + chrX 21345174 intergenic fliI +,dod + chrX 21345225 intergenic dod +,fliI + chrX_12_21345001 chrX_21345001 RAL-85 1371 chrX 21458696 21458722 chrX 21464132 21464158 Ivk 4 5436 0.5 1.5 1.0 2.0 5462 chrX 21458696 intergenic not near genes chrX 21461427 intergenic not near genes chrX 21464158 intergenic not near genes chrX_4_21460001 chrX_21460001 RAL-85 1372 chrX 21507325 21507351 chrX 21507415 21507441 11 87 1.0 0.5 0.8 6.1 116 chrX 21507325 intron CR45082 - chrX 21507383 intron CR45082 - chrX 21507441 intron CR45082 - chrX_11_21505001 chrX_21505001 RAL-85 1373 chrX 21594056 21594066 chrX 21594479 21594488 5 423 2.5 5.5 4.0 1.0 432 chrX 21594056 intergenic not near genes chrX 21594272 intergenic not near genes chrX 21594488 intergenic not near genes chrX_5_21590001 chrX_21590001 RAL-85 1374 chrX 22660566 22660596 chrX 22660650 22660680 7 84 5.0 2.0 3.5 1.6 114 chrX 22660566 intron CR44997 + chrX 22660623 intron CR44997 + chrX 22660680 intron CR44997 + chrX_7_22660001 chrX_22660001 RAL-85 1375 chrX 22677300 22677327 chrX 22677509 22677535 9 209 1.0 1.0 1.0 4.5 235 chrX 22677300 intron CR44997 + chrX 22677418 intron CR44997 + chrX 22677535 intron CR44997 + chrX_9_22675001 chrX_22675001 RAL-85 1376 chrX 22697495 22697524 chrX 22701792 22701821 Juan 4 4297 1.5 1.0 1.2 1.8 4326 chrX 22697495 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701821 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-85 1377 chrX 22996313 22996329 chrX 23003547 23003562 roo 6 7234 4.0 1.0 2.5 1.7 7249 chrX 22996313 intron,intron stnA -,stnB - chrX 22999938 intron,intron stnA -,stnB - chrX 23003562 intron,intron stnA -,stnB - chrX_6_22995001 chrX_22995001 RAL-85 1378 chrX 23009220 23009244 chrX 23009891 23009915 14 670 1.5 5.0 3.2 3.3 695 chrX 23009220 5` UTR,exon CR45009 +,FucTC - chrX 23009568 intron FucTC - chrX 23009915 exon FucTC - chrX_14_23005001 chrX_23005001 RAL-85 1379 chrY 975792 975816 chrY 975871 975896 5 96 126.5 146.5 136.5 0.0 104 chrY 975792 intergenic not near genes chrY 975844 intergenic not near genes chrY 975896 intergenic not near genes chrY_5_975001 chrY_975001 RAL-85