SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47457 47479 chr2L 52562 52584 jockey 8 5105 5.5 3.5 4.5 1.5 5127 chr2L 47457 intron Cda5 - chr2L 50020 intron Cda5 - chr2L 52584 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-859 2 chr2L 325133 325152 chr2L 325207 325229 4 76 2.5 4.5 3.5 0.9 96 chr2L 325133 intron Plc21C + chr2L 325181 intron Plc21C + chr2L 325229 intron Plc21C + chr2L_4_325001 chr2L_325001 RAL-859 3 chr2L 347885 347916 chr2L 355385 355416 blood 6 7500 2.5 3.0 2.8 1.6 7531 chr2L 347885 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355416 3` UTR Plc21C + chr2L_6_350001 chr2L_350001 RAL-859 4 chr2L 590620 590649 chr2L 590721 590750 6 101 1.5 0.5 1.0 3.0 130 chr2L 590620 intron Gsc - chr2L 590685 intron Gsc - chr2L 590750 intron Gsc - chr2L_6_590001 chr2L_590001 RAL-859 5 chr2L 609297 609326 chr2L 609413 609442 14 115 2.5 2.5 2.5 4.0 145 chr2L 609297 intergenic CR43649 - chr2L 609370 intergenic CR43649 - chr2L 609442 intergenic CR43649 - chr2L_14_605001 chr2L_605001 RAL-859 6 chr2L 686918 686940 chr2L 695958 695980 roo 7 9040 1.5 3.0 2.2 2.2 9062 chr2L 686918 intron ds - chr2L 691449 intron ds - chr2L 695980 intron ds - chr2L_7_690001 chr2L_690001 RAL-859 7 chr2L 748204 748229 chr2L 748283 748308 13 79 4.5 5.0 4.8 2.2 104 chr2L 748204 intergenic not near genes chr2L 748256 intergenic not near genes chr2L 748308 intergenic not near genes chr2L_13_745001 chr2L_745001 RAL-859 8 chr2L 764554 764567 chr2L 764654 764667 5 100 1.5 1.0 1.2 2.3 113 chr2L 764554 intergenic not near genes chr2L 764610 intergenic not near genes chr2L 764667 intergenic not near genes chr2L_5_760001 chr2L_760001 RAL-859 9 chr2L 770463 770493 chr2L 772244 772274 Bari1 11 1781 2.0 2.5 2.2 3.4 1811 chr2L 770463 intergenic not near genes chr2L 771368 intergenic not near genes chr2L 772274 intergenic CR44614 + chr2L_11_770001 chr2L_770001 RAL-859 10 chr2L 795262 795285 chr2L 795372 795393 7 109 3.0 0.0 1.5 2.8 131 chr2L 795262 intergenic not near genes chr2L 795328 intergenic not near genes chr2L 795393 intergenic not near genes chr2L_7_795001 chr2L_795001 RAL-859 11 chr2L 826905 826933 chr2L 826984 827012 16 79 2.5 1.5 2.0 5.3 107 chr2L 826905 intron dock + chr2L 826958 intron dock + chr2L 827012 intron dock + chr2L_16_825001 chr2L_825001 RAL-859 12 chr2L 877853 877863 chr2L 877934 877944 5 81 5.0 1.0 3.0 1.2 91 chr2L 877853 3` UTR,exon CG15824 -,ninaA + chr2L 877898 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_5_875001 chr2L_875001 RAL-859 13 chr2L 941746 941779 chr2L 941873 941905 13 127 0.5 0.0 0.2 10.8 159 chr2L 941746 intron CG4341 + chr2L 941826 intron CG4341 + chr2L 941905 intron CG4341 + chr2L_13_940001 chr2L_940001 RAL-859 14 chr2L 964555 964574 chr2L 964639 964658 6 84 1.5 3.0 2.2 1.9 103 chr2L 964555 intergenic not near genes chr2L 964606 intergenic not near genes chr2L 964658 intergenic not near genes chr2L_6_960001 chr2L_960001 RAL-859 15 chr2L 976877 976911 chr2L 984513 984547 roo 9 7636 2.0 1.5 1.8 3.2 7670 chr2L 976877 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_9_980001 chr2L_980001 RAL-859 16 chr2L 1030606 1030621 chr2L 1030934 1030950 5 328 4.5 1.0 2.8 1.3 344 chr2L 1030606 intron IA-2 - chr2L 1030778 intron IA-2 - chr2L 1030950 intron IA-2 - chr2L_5_1030001 chr2L_1030001 RAL-859 17 chr2L 1074060 1074093 chr2L 1074140 1074173 12 80 1.0 1.0 1.0 6.0 113 chr2L 1074060 intron S - chr2L 1074116 intron S - chr2L 1074173 intron S - chr2L_12_1070001 chr2L_1070001 RAL-859 18 chr2L 1121136 1121160 chr2L 1121223 1121247 8 87 3.0 3.5 3.2 1.9 111 chr2L 1121136 intron Pino - chr2L 1121192 intron Pino - chr2L 1121247 intron Pino - chr2L_8_1120001 chr2L_1120001 RAL-859 19 chr2L 1156858 1156870 chr2L 1156963 1156974 5 105 5.0 1.0 3.0 1.2 116 chr2L 1156858 intron capt - chr2L 1156916 intron capt - chr2L 1156974 intron capt - chr2L_5_1155001 chr2L_1155001 RAL-859 20 chr2L 1220128 1220156 chr2L 1227594 1227622 blood 7 7466 2.0 1.0 1.5 2.8 7494 chr2L 1220128 intron CG42329 + chr2L 1223875 intron CG42329 + chr2L 1227622 intron CG42329 + chr2L_7_1220001 chr2L_1220001 RAL-859 21 chr2L 1261142 1261260 chr2L 1261223 1261341 6 81 0.0 0.0 0.0 6.0 199 chr2L 1261142 intron robo3 + chr2L 1261242 intron robo3 + chr2L 1261341 intron robo3 + chr2L_6_1260001 chr2L_1260001 RAL-859 22 chr2L 1512631 1512663 chr2L 1512890 1512922 6 258 1.0 1.0 1.0 3.0 291 chr2L 1512631 intergenic not near genes chr2L 1512776 intergenic not near genes chr2L 1512922 intergenic not near genes chr2L_6_1510001 chr2L_1510001 RAL-859 23 chr2L 1570685 1570719 chr2L 1573557 1573591 F-element 6 2872 1.5 3.0 2.2 1.9 2906 chr2L 1570685 intron haf + chr2L 1572138 intron haf + chr2L 1573591 intron haf + chr2L_6_1570001 chr2L_1570001 RAL-859 24 chr2L 1647951 1647980 chr2L 1648104 1648133 7 153 1.5 1.5 1.5 2.8 182 chr2L 1647951 intergenic not near genes chr2L 1648042 intergenic not near genes chr2L 1648133 intergenic not near genes chr2L_7_1645001 chr2L_1645001 RAL-859 25 chr2L 1711363 1711379 chr2L 1711687 1711703 mdg3 5 324 4.5 2.5 3.5 1.1 340 chr2L 1711363 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711533 3` UTR frtz - chr2L 1711703 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-859 26 chr2L 1721827 1721835 chr2L 1721911 1721919 4 84 0.0 3.5 1.8 1.4 92 chr2L 1721827 intron Rim2 - chr2L 1721873 intron Rim2 - chr2L 1721919 intron Rim2 - chr2L_4_1720001 chr2L_1720001 RAL-859 27 chr2L 1724806 1724838 chr2L 1724888 1724920 6 82 1.5 1.0 1.2 2.7 114 chr2L 1724806 3` UTR Eno - chr2L 1724863 3` UTR Eno - chr2L 1724920 3` UTR Eno - chr2L_6_1720001 chr2L_1720001 RAL-859 28 chr2L 1880468 1880483 chr2L 1884660 1884676 6 4192 19.0 23.0 21.0 0.3 4208 chr2L 1880468 5` UTR CG31663 - chr2L 1882572 exon CG15358 - chr2L 1884676 5` UTR CG7337 + chr2L_6_1880001 chr2L_1880001 RAL-859 29 chr2L 2100379 2100401 chr2L 2109529 2109552 roo 5 9151 4.0 3.0 3.5 1.1 9173 chr2L 2100379 intron dpr3 - chr2L 2104966 intron dpr3 - chr2L 2109552 intron dpr3 - chr2L_5_2100001 chr2L_2100001 RAL-859 30 chr2L 2112120 2112140 chr2L 2119782 2119802 opus 6 7662 0.0 4.0 2.0 2.0 7682 chr2L 2112120 intergenic not near genes chr2L 2115961 intergenic not near genes chr2L 2119802 intergenic not near genes chr2L_6_2115001 chr2L_2115001 RAL-859 31 chr2L 2262310 2262334 chr2L 2262387 2262411 10 77 2.0 0.0 1.0 5.0 101 chr2L 2262310 intergenic not near genes chr2L 2262360 intergenic not near genes chr2L 2262411 intergenic not near genes chr2L_10_2260001 chr2L_2260001 RAL-859 32 chr2L 2294046 2294064 chr2L 2299251 2299269 copia 4 5204 3.5 3.0 3.2 1.0 5223 chr2L 2294046 intergenic not near genes chr2L 2296658 intergenic not near genes chr2L 2299269 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-859 33 chr2L 2299329 2299364 chr2L 2299407 2299442 18 78 2.5 0.5 1.5 7.2 113 chr2L 2299329 intergenic not near genes chr2L 2299386 intergenic not near genes chr2L 2299442 intergenic not near genes chr2L_18_2295001 chr2L_2295001 RAL-859 34 chr2L 2317601 2317620 chr2L 2317678 2317697 4 77 8.0 3.0 5.5 0.6 96 chr2L 2317601 intron,intron CG9967 -,eys + chr2L 2317649 intron,intron CG9967 -,eys + chr2L 2317697 intron,intron CG9967 -,eys + chr2L_4_2315001 chr2L_2315001 RAL-859 35 chr2L 2503729 2503739 chr2L 2504508 2504517 4 779 2.0 2.0 2.0 1.3 788 chr2L 2503729 intergenic not near genes chr2L 2504123 intergenic not near genes chr2L 2504517 intergenic not near genes chr2L_4_2500001 chr2L_2500001 RAL-859 36 chr2L 2553645 2553662 chr2L 2553735 2553749 4 89 2.0 3.0 2.5 1.1 104 chr2L 2553645 intergenic not near genes chr2L 2553697 intergenic not near genes chr2L 2553749 intergenic not near genes chr2L_4_2550001 chr2L_2550001 RAL-859 37 chr2L 2661196 2661229 chr2L 2663034 2663067 I-element 4 1837 1.5 1.5 1.5 1.6 1871 chr2L 2661196 intergenic not near genes chr2L 2662132 intergenic not near genes chr2L 2663067 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-859 38 chr2L 2698867 2698891 chr2L 2698953 2698978 6 87 0.5 0.5 0.5 4.0 111 chr2L 2698867 intron CG31690 + chr2L 2698922 intron CG31690 + chr2L 2698978 intron CG31690 + chr2L_6_2695001 chr2L_2695001 RAL-859 39 chr2L 2772611 2772622 chr2L 2779195 2779205 297 4 6584 2.5 3.5 3.0 1.0 6594 chr2L 2772611 3` UTR Syt1 - chr2L 2775908 intron Syt1 - chr2L 2779205 3` UTR Syt1 - chr2L_4_2775001 chr2L_2775001 RAL-859 40 chr2L 2864343 2864364 chr2L 2864604 2864625 4 261 2.5 0.0 1.2 1.8 282 chr2L 2864343 intron CG2991 + chr2L 2864484 intron CG2991 + chr2L 2864625 intron CG2991 + chr2L_4_2860001 chr2L_2860001 RAL-859 41 chr2L 2909908 2909922 chr2L 2909992 2910006 6 84 4.5 1.5 3.0 1.5 98 chr2L 2909908 intron lilli + chr2L 2909957 intron lilli + chr2L 2910006 intron lilli + chr2L_6_2905001 chr2L_2905001 RAL-859 42 chr2L 2937420 2937451 chr2L 2937496 2937527 7 77 2.0 2.5 2.2 2.2 107 chr2L 2937420 intron lilli + chr2L 2937474 intron lilli + chr2L 2937527 intron lilli + chr2L_7_2935001 chr2L_2935001 RAL-859 43 chr2L 2938965 2938997 chr2L 2939378 2939411 6 414 0.0 3.0 1.5 2.4 446 chr2L 2938965 intron lilli + chr2L 2939188 intron lilli + chr2L 2939411 intron lilli + chr2L_6_2935001 chr2L_2935001 RAL-859 44 chr2L 3008915 3008923 chr2L 3009024 3009032 4 109 1.0 3.0 2.0 1.3 117 chr2L 3008915 intron CG17265 + chr2L 3008974 intron CG17265 + chr2L 3009032 intron CG17265 + chr2L_4_3005001 chr2L_3005001 RAL-859 45 chr2L 3073030 3073064 chr2L 3078232 3078267 copia 10 5203 3.0 2.5 2.8 2.6 5237 chr2L 3073030 intron toc - chr2L 3075648 intron toc - chr2L 3078267 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-859 46 chr2L 3108871 3108897 chr2L 3108948 3108974 8 77 1.5 0.0 0.8 4.4 103 chr2L 3108871 intron toc - chr2L 3108922 intron toc - chr2L 3108974 intron toc - chr2L_8_3105001 chr2L_3105001 RAL-859 47 chr2L 3186470 3186500 chr2L 3186556 3186584 6 86 1.5 1.0 1.2 2.7 114 chr2L 3186470 intron CG34393 - chr2L 3186527 intron CG34393 - chr2L 3186584 intron CG34393 - chr2L_6_3185001 chr2L_3185001 RAL-859 48 chr2L 3251504 3251524 chr2L 3259069 3259089 springer 4 7564 2.0 3.0 2.5 1.1 7585 chr2L 3251504 intergenic not near genes chr2L 3255296 intergenic not near genes chr2L 3259089 intergenic not near genes chr2L_4_3255001 chr2L_3255001 RAL-859 49 chr2L 3312084 3312114 chr2L 3312189 3312219 7 105 0.0 0.0 0.0 7.0 135 chr2L 3312084 intron CG3277 + chr2L 3312152 intron CG3277 + chr2L 3312219 intron CG3277 + chr2L_7_3310001 chr2L_3310001 RAL-859 50 chr2L 3323263 3323284 chr2L 3323370 3323391 9 107 1.0 3.5 2.2 2.8 128 chr2L 3323263 intergenic CG8837 + chr2L 3323327 intergenic CG8837 + chr2L 3323391 intergenic CG8837 + chr2L_9_3320001 chr2L_3320001 RAL-859 51 chr2L 3397351 3397373 chr2L 3397493 3397514 8 142 4.5 3.0 3.8 1.7 163 chr2L 3397351 3` UTR CR44792 - chr2L 3397432 3` UTR CR44792 - chr2L 3397514 3` UTR CR44792 - chr2L_8_3395001 chr2L_3395001 RAL-859 52 chr2L 3459348 3459363 chr2L 3462468 3462483 4 3120 23.0 18.5 20.8 0.2 3135 chr2L 3459348 exon Sec5 + chr2L 3460916 exon CG3246 - chr2L 3462483 3` UTR msl-2 - chr2L_4_3460001 chr2L_3460001 RAL-859 53 chr2L 3497843 3497869 chr2L 3497921 3497947 10 78 1.0 1.0 1.0 5.0 104 chr2L 3497843 intron tim - chr2L 3497895 intron tim - chr2L 3497947 intron tim - chr2L_10_3495001 chr2L_3495001 RAL-859 54 chr2L 3549651 3549676 chr2L 3549754 3549776 12 102 1.0 1.0 1.0 6.0 125 chr2L 3549651 intergenic not near genes chr2L 3549714 intergenic not near genes chr2L 3549776 intergenic not near genes chr2L_12_3545001 chr2L_3545001 RAL-859 55 chr2L 3557016 3557047 chr2L 3557098 3557129 9 82 0.5 2.5 1.5 3.6 113 chr2L 3557016 intergenic not near genes chr2L 3557072 intergenic not near genes chr2L 3557129 intergenic not near genes chr2L_9_3555001 chr2L_3555001 RAL-859 56 chr2L 3582882 3582903 chr2L 3582958 3582980 6 77 1.0 3.0 2.0 2.0 98 chr2L 3582882 intergenic not near genes chr2L 3582931 intergenic not near genes chr2L 3582980 intergenic not near genes chr2L_6_3580001 chr2L_3580001 RAL-859 57 chr2L 3603627 3603652 chr2L 3603723 3603748 6 95 3.0 2.0 2.5 1.7 121 chr2L 3603627 intergenic not near genes chr2L 3603688 intergenic not near genes chr2L 3603748 intergenic odd - chr2L_6_3600001 chr2L_3600001 RAL-859 58 chr2L 3634101 3634136 chr2L 3634183 3634218 9 82 2.5 4.0 3.2 2.1 117 chr2L 3634101 intron for - chr2L 3634160 intron for - chr2L 3634218 intron for - chr2L_9_3630001 chr2L_3630001 RAL-859 59 chr2L 3784811 3784827 chr2L 3785670 3785686 4 859 1.0 7.5 4.2 0.8 875 chr2L 3784811 intergenic CG31960 + chr2L 3785248 exon CG31960 + chr2L 3785686 intergenic CG31958 +,CG31960 + chr2L_4_3785001 chr2L_3785001 RAL-859 60 chr2L 3831837 3831864 chr2L 3831918 3831945 6 81 1.5 1.0 1.2 2.7 108 chr2L 3831837 intergenic not near genes chr2L 3831891 intergenic not near genes chr2L 3831945 intergenic not near genes chr2L_6_3830001 chr2L_3830001 RAL-859 61 chr2L 3950084 3950097 chr2L 3950160 3950173 4 76 2.0 1.5 1.8 1.4 89 chr2L 3950084 intron fred - chr2L 3950128 intron fred - chr2L 3950173 intron fred - chr2L_4_3950001 chr2L_3950001 RAL-859 62 chr2L 4011339 4011358 chr2L 4011416 4011435 6 77 3.5 2.0 2.8 1.6 96 chr2L 4011339 intergenic not near genes chr2L 4011387 intergenic not near genes chr2L 4011435 intergenic not near genes chr2L_6_4010001 chr2L_4010001 RAL-859 63 chr2L 4066041 4066063 chr2L 4068866 4068888 Juan 5 2825 2.5 4.0 3.2 1.2 2847 chr2L 4066041 intron ed + chr2L 4067464 intron ed + chr2L 4068888 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-859 64 chr2L 4150629 4150656 chr2L 4150709 4150736 6 79 0.5 1.5 1.0 3.0 107 chr2L 4150629 exon CG2955 + chr2L 4150682 exon CG2955 + chr2L 4150736 exon CG2955 + chr2L_6_4150001 chr2L_4150001 RAL-859 65 chr2L 4152251 4152252 chr2L 16217660 16217660 7 12065408 9.0 11.5 10.2 0.6 12065409 chr2L 4152251 intergenic not near genes chr2L 10184956 exon Sur - chr2L 16217660 intergenic not near genes chr2L_7_10180001 chr2L_10180001 RAL-859 66 chr2L 4155608 4155630 chr2L 4155849 4155871 4 241 0.0 1.5 0.8 2.2 263 chr2L 4155608 intergenic not near genes chr2L 4155740 intergenic not near genes chr2L 4155871 intergenic not near genes chr2L_4_4155001 chr2L_4155001 RAL-859 67 chr2L 4181297 4181305 chr2L 4183929 4183937 Burdock 5 2632 1.5 5.0 3.2 1.2 2640 chr2L 4181297 intergenic not near genes chr2L 4182617 intergenic not near genes chr2L 4183937 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-859 68 chr2L 4244397 4244413 chr2L 4244764 4244780 5 367 8.0 4.0 6.0 0.7 383 chr2L 4244397 intergenic not near genes chr2L 4244588 intergenic not near genes chr2L 4244780 intergenic not near genes chr2L_5_4240001 chr2L_4240001 RAL-859 69 chr2L 4265659 4265673 chr2L 4265749 4265763 6 90 5.0 0.0 2.5 1.7 104 chr2L 4265659 intergenic not near genes chr2L 4265711 intergenic not near genes chr2L 4265763 intergenic not near genes chr2L_6_4265001 chr2L_4265001 RAL-859 70 chr2L 4351473 4351497 chr2L 4351549 4351573 5 76 5.0 0.0 2.5 1.4 100 chr2L 4351473 intergenic CR44700 + chr2L 4351523 intergenic CR44700 + chr2L 4351573 intergenic CR44700 + chr2L_5_4350001 chr2L_4350001 RAL-859 71 chr2L 4366902 4366934 chr2L 4367235 4367265 8 333 1.5 2.5 2.0 2.7 363 chr2L 4366902 intron Traf4 + chr2L 4367084 intron Traf4 + chr2L 4367265 intron Traf4 + chr2L_8_4365001 chr2L_4365001 RAL-859 72 chr2L 4601710 4601737 chr2L 4609151 4609178 mdg1 7 7441 2.0 3.5 2.8 1.8 7468 chr2L 4601710 intron dp - chr2L 4605444 intron dp - chr2L 4609178 intron dp - chr2L_7_4605001 chr2L_4605001 RAL-859 73 chr2L 4621804 4621824 chr2L 4621878 4621906 6 80 0.0 1.5 0.8 3.3 102 chr2L 4621804 intergenic not near genes chr2L 4621855 intergenic not near genes chr2L 4621906 intergenic not near genes chr2L_6_4620001 chr2L_4620001 RAL-859 74 chr2L 4720627 4720645 chr2L 4720710 4720728 5 83 6.0 1.0 3.5 1.1 101 chr2L 4720627 3` UTR CG34351 + chr2L 4720678 3` UTR CG34351 + chr2L 4720728 3` UTR CG34351 + chr2L_5_4720001 chr2L_4720001 RAL-859 75 chr2L 4748695 4748722 chr2L 4748774 4748801 5 79 2.0 2.0 2.0 1.7 106 chr2L 4748695 intron CG15630 - chr2L 4748748 intron CG15630 - chr2L 4748801 intron CG15630 - chr2L_5_4745001 chr2L_4745001 RAL-859 76 chr2L 4841078 4841102 chr2L 4841154 4841178 8 76 3.5 4.5 4.0 1.6 100 chr2L 4841078 intron CG12194 + chr2L 4841128 intron CG12194 + chr2L 4841178 exon CG12194 + chr2L_8_4840001 chr2L_4840001 RAL-859 77 chr2L 4878542 4878574 chr2L 4878625 4878657 6 83 1.5 3.0 2.2 1.9 115 chr2L 4878542 3` UTR Cf2 - chr2L 4878600 3` UTR Cf2 - chr2L 4878657 3` UTR Cf2 - chr2L_6_4875001 chr2L_4875001 RAL-859 78 chr2L 4879142 4879176 chr2L 4880376 4880410 13 1234 18.5 17.0 17.8 0.7 1268 chr2L 4879142 exon Cf2 - chr2L 4879776 intron Cf2 - chr2L 4880410 exon Cf2 - chr2L_13_4875001 chr2L_4875001 RAL-859 79 chr2L 4880421 4880450 chr2L 4881215 4881245 9 794 12.0 13.5 12.8 0.7 824 chr2L 4880421 exon Cf2 - chr2L 4880833 intron Cf2 - chr2L 4881245 exon Cf2 - chr2L_9_4880001 chr2L_4880001 RAL-859 80 chr2L 4886880 4886914 chr2L 4886974 4887007 4 94 2.5 3.5 3.0 1.0 127 chr2L 4886880 intergenic not near genes chr2L 4886944 intergenic not near genes chr2L 4887007 intergenic not near genes chr2L_4_4885001 chr2L_4885001 RAL-859 81 chr2L 4917318 4917345 chr2L 4917408 4917435 6 90 0.5 2.0 1.2 2.7 117 chr2L 4917318 intron hoe1 - chr2L 4917376 intron hoe1 - chr2L 4917435 intron hoe1 - chr2L_6_4915001 chr2L_4915001 RAL-859 82 chr2L 4918166 4918198 chr2L 4923239 4923271 jockey 10 5073 3.5 2.5 3.0 2.5 5105 chr2L 4918166 intron hoe1 - chr2L 4920718 intron hoe1 - chr2L 4923271 intron hoe1 - chr2L_10_4920001 chr2L_4920001 RAL-859 83 chr2L 4953524 4953543 chr2L 4953765 4953784 pogo 5 241 1.5 2.0 1.8 1.8 260 chr2L 4953524 intergenic Jon25Bii - chr2L 4953654 intergenic not near genes chr2L 4953784 intergenic Jon25Bi - chr2L_5_4950001 chr2L_4950001 RAL-859 84 chr2L 5120973 5121005 chr2L 5121067 5121097 7 93 3.0 3.0 3.0 1.8 124 chr2L 5120973 intron Msp300 + chr2L 5121035 intron Msp300 + chr2L 5121097 intron Msp300 + chr2L_7_5120001 chr2L_5120001 RAL-859 85 chr2L 5242936 5242937 chr2L 16217660 16217661 9 10974724 15.5 11.5 13.5 0.6 10974725 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217661 intergenic not near genes chr2L_9_10730001 chr2L_10730001 RAL-859 86 chr2L 5516659 5516680 chr2L 5516738 5516759 4 79 1.0 2.0 1.5 1.6 100 chr2L 5516659 intergenic not near genes chr2L 5516709 intergenic not near genes chr2L 5516759 intergenic not near genes chr2L_4_5515001 chr2L_5515001 RAL-859 87 chr2L 5518625 5518651 chr2L 5518747 5518774 8 122 4.5 2.5 3.5 1.8 149 chr2L 5518625 exon CG14020 + chr2L 5518700 exon CG14020 + chr2L 5518774 exon CG14020 + chr2L_8_5515001 chr2L_5515001 RAL-859 88 chr2L 5634173 5634178 chr2L 5634264 5634269 5 91 6.5 1.5 4.0 1.0 96 chr2L 5634173 intron CG31646 - chr2L 5634221 intron CG31646 - chr2L 5634269 intron CG31646 - chr2L_5_5630001 chr2L_5630001 RAL-859 89 chr2L 5695868 5695884 chr2L 5695960 5695976 6 92 4.5 3.5 4.0 1.2 108 chr2L 5695868 intergenic not near genes chr2L 5695922 intergenic not near genes chr2L 5695976 intergenic not near genes chr2L_6_5695001 chr2L_5695001 RAL-859 90 chr2L 5758347 5758368 chr2L 5758590 5758611 5 242 1.0 3.5 2.2 1.6 264 chr2L 5758347 intron CG11030 + chr2L 5758479 intron CG11030 + chr2L 5758611 intron CG11030 + chr2L_5_5755001 chr2L_5755001 RAL-859 91 chr2L 5819649 5819684 chr2L 5819736 5819771 6 86 1.0 2.0 1.5 2.4 122 chr2L 5819649 intergenic not near genes chr2L 5819710 intergenic not near genes chr2L 5819771 intergenic not near genes chr2L_6_5815001 chr2L_5815001 RAL-859 92 chr2L 5904464 5904475 chr2L 5904544 5904555 4 80 1.5 0.0 0.8 2.2 91 chr2L 5904464 intron CG9021 - chr2L 5904510 intron CG9021 - chr2L 5904555 intron CG9021 - chr2L_4_5900001 chr2L_5900001 RAL-859 93 chr2L 5946714 5946745 chr2L 5946797 5946828 4 83 1.0 2.5 1.8 1.4 114 chr2L 5946714 intron Gpdh + chr2L 5946771 intron Gpdh + chr2L 5946828 intron Gpdh + chr2L_4_5945001 chr2L_5945001 RAL-859 94 chr2L 5962271 5962305 chr2L 5962347 5962380 8 76 1.0 1.0 1.0 4.0 109 chr2L 5962271 intergenic not near genes chr2L 5962326 intergenic not near genes chr2L 5962380 intergenic not near genes chr2L_8_5960001 chr2L_5960001 RAL-859 95 chr2L 5970662 5970694 chr2L 5970828 5970861 12 167 3.5 3.5 3.5 2.7 199 chr2L 5970662 3` UTR,exon CR43465 -,Ucp4B + chr2L 5970762 3` UTR,3` UTR CR43465 -,Ucp4B + chr2L 5970861 3` UTR,3` UTR CR43465 -,Ucp4B + chr2L_12_5970001 chr2L_5970001 RAL-859 96 chr2L 6070899 6070923 chr2L 6070988 6071012 4 88 0.0 4.0 2.0 1.3 113 chr2L 6070899 intergenic Kr-h2 +,CG9154 - chr2L 6070956 intergenic Kr-h2 +,CG9154 - chr2L 6071012 5` UTR Kr-h2 + chr2L_4_6070001 chr2L_6070001 RAL-859 97 chr2L 6253618 6253633 chr2L 6253694 6253709 6 76 2.5 1.0 1.8 2.1 91 chr2L 6253618 intron Ddr + chr2L 6253664 intron Ddr + chr2L 6253709 intron Ddr + chr2L_6_6250001 chr2L_6250001 RAL-859 98 chr2L 6363151 6363183 chr2L 6366077 6366106 Burdock 9 2924 3.0 2.0 2.5 2.6 2955 chr2L 6363151 intergenic not near genes chr2L 6364628 intergenic not near genes chr2L 6366106 intergenic not near genes chr2L_9_6360001 chr2L_6360001 RAL-859 99 chr2L 6426853 6426885 chr2L 6445113 6445145 roo 5 18260 5.0 2.5 3.8 1.0 18292 chr2L 6426853 3` UTR CG9527 - chr2L 6435999 intron CG9527 - chr2L 6445145 exon CG9527 - chr2L_5_6435001 chr2L_6435001 RAL-859 100 chr2L 6454314 6454338 chr2L 6454619 6454642 4 305 4.0 3.5 3.8 0.8 328 chr2L 6454314 intron retm - chr2L 6454478 intron retm - chr2L 6454642 intron retm - chr2L_4_6450001 chr2L_6450001 RAL-859 101 chr2L 6462258 6462284 chr2L 6462336 6462362 4 78 2.0 2.5 2.2 1.2 104 chr2L 6462258 intron CG16947 - chr2L 6462310 intron CG16947 - chr2L 6462362 intron CG16947 - chr2L_4_6460001 chr2L_6460001 RAL-859 102 chr2L 6598121 6598149 chr2L 6599078 6599105 5 956 3.0 1.5 2.2 1.6 984 chr2L 6598121 intron CG11319 - chr2L 6598613 intron CG11319 - chr2L 6599105 intron CG11319 - chr2L_5_6595001 chr2L_6595001 RAL-859 103 chr2L 6626884 6626919 chr2L 6626969 6627004 8 85 3.5 3.0 3.2 1.9 120 chr2L 6626884 intron Oatp26F - chr2L 6626944 intron Oatp26F - chr2L 6627004 intron Oatp26F - chr2L_8_6625001 chr2L_6625001 RAL-859 104 chr2L 6716609 6716629 chr2L 6716699 6716719 6 90 1.5 6.0 3.8 1.2 110 chr2L 6716609 intergenic AkhR - chr2L 6716664 intergenic AkhR - chr2L 6716719 intergenic not near genes chr2L_6_6715001 chr2L_6715001 RAL-859 105 chr2L 6740743 6740761 chr2L 6740830 6740848 4 87 0.0 7.0 3.5 0.9 105 chr2L 6740743 intergenic not near genes chr2L 6740796 intergenic not near genes chr2L 6740848 intergenic not near genes chr2L_4_6740001 chr2L_6740001 RAL-859 106 chr2L 6771987 6772014 chr2L 6772073 6772100 4 86 2.5 3.0 2.8 1.1 113 chr2L 6771987 intron CG11321 - chr2L 6772044 intron CG11321 - chr2L 6772100 intron CG11321 - chr2L_4_6770001 chr2L_6770001 RAL-859 107 chr2L 6799535 6799571 chr2L 6799623 6799659 4 88 0.5 1.0 0.8 2.2 124 chr2L 6799535 5` UTR CR43610 + chr2L 6799597 5` UTR CR43610 + chr2L 6799659 intergenic CR43610 +,CG17376 - chr2L_4_6795001 chr2L_6795001 RAL-859 108 chr2L 6876139 6876173 chr2L 6883830 6883864 diver 6 7688 1.0 3.5 2.2 1.9 7725 chr2L 6876139 intron Nlg2 + chr2L 6880002 intron Nlg2 + chr2L 6883864 intron Nlg2 + chr2L_6_6880001 chr2L_6880001 RAL-859 109 chr2L 6891450 6891472 chr2L 6891548 6891570 7 98 1.0 2.0 1.5 2.8 120 chr2L 6891450 intron Nlg2 + chr2L 6891510 intron Nlg2 + chr2L 6891570 intron Nlg2 + chr2L_7_6890001 chr2L_6890001 RAL-859 110 chr2L 7030089 7030109 chr2L 7030170 7030190 4 81 1.0 2.5 1.8 1.4 101 chr2L 7030089 intergenic Rab30 - chr2L 7030140 intergenic Rab30 - chr2L 7030190 intergenic Rab30 - chr2L_4_7030001 chr2L_7030001 RAL-859 111 chr2L 7077358 7077383 chr2L 7077435 7077460 6 77 1.5 2.0 1.8 2.1 102 chr2L 7077358 intron Pvf2 - chr2L 7077409 intron Pvf2 - chr2L 7077460 intron Pvf2 - chr2L_6_7075001 chr2L_7075001 RAL-859 112 chr2L 7217236 7217266 chr2L 7217341 7217371 7 105 1.0 0.0 0.5 4.7 135 chr2L 7217236 intron CG13784 - chr2L 7217304 intron CG13784 - chr2L 7217371 intron CG13784 - chr2L_7_7215001 chr2L_7215001 RAL-859 113 chr2L 7325911 7325949 chr2L 7325995 7326034 7 85 2.0 1.5 1.8 2.5 123 chr2L 7325911 intergenic not near genes chr2L 7325972 intergenic not near genes chr2L 7326034 intergenic not near genes chr2L_7_7325001 chr2L_7325001 RAL-859 114 chr2L 7343326 7343356 chr2L 7350442 7350471 roo 5 7115 1.5 3.5 2.5 1.4 7145 chr2L 7343326 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350471 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-859 115 chr2L 7375806 7375821 chr2L 7375919 7375932 5 113 2.5 1.5 2.0 1.7 126 chr2L 7375806 exon Wnt10 + chr2L 7375869 intron Wnt10 + chr2L 7375932 intron Wnt10 + chr2L_5_7375001 chr2L_7375001 RAL-859 116 chr2L 7502738 7502764 chr2L 7502814 7502838 11 76 3.0 2.5 2.8 2.9 100 chr2L 7502738 intron RapGAP1 - chr2L 7502788 intron RapGAP1 - chr2L 7502838 intron RapGAP1 - chr2L_11_7500001 chr2L_7500001 RAL-859 117 chr2L 7555218 7555233 chr2L 7555295 7555310 6 77 0.0 3.0 1.5 2.4 92 chr2L 7555218 intron RapGAP1 - chr2L 7555264 intron RapGAP1 - chr2L 7555310 intron RapGAP1 - chr2L_6_7555001 chr2L_7555001 RAL-859 118 chr2L 7562183 7562188 chr2L 7562263 7562268 4 80 1.0 1.5 1.2 1.8 85 chr2L 7562183 intron RapGAP1 - chr2L 7562226 intron RapGAP1 - chr2L 7562268 intron RapGAP1 - chr2L_4_7560001 chr2L_7560001 RAL-859 119 chr2L 7567488 7567509 chr2L 7567565 7567586 5 77 2.5 2.5 2.5 1.4 98 chr2L 7567488 intron RapGAP1 - chr2L 7567537 intron RapGAP1 - chr2L 7567586 intron RapGAP1 - chr2L_5_7565001 chr2L_7565001 RAL-859 120 chr2L 7650029 7650037 chr2L 7650105 7650112 7 76 2.5 0.0 1.2 3.2 83 chr2L 7650029 intron Slob - chr2L 7650070 intron Slob - chr2L 7650112 intron Slob - chr2L_7_7650001 chr2L_7650001 RAL-859 121 chr2L 7704713 7704727 chr2L 7704851 7704865 7 138 5.0 2.0 3.5 1.6 152 chr2L 7704713 intron Tep3 + chr2L 7704789 intron Tep3 + chr2L 7704865 intron Tep3 + chr2L_7_7700001 chr2L_7700001 RAL-859 122 chr2L 7748692 7748706 chr2L 7748789 7748803 5 97 0.0 2.0 1.0 2.5 111 chr2L 7748692 intergenic not near genes chr2L 7748748 intergenic not near genes chr2L 7748803 intergenic not near genes chr2L_5_7745001 chr2L_7745001 RAL-859 123 chr2L 7766630 7766639 chr2L 7766704 7766715 4 75 4.0 0.0 2.0 1.3 85 chr2L 7766630 intergenic not near genes chr2L 7766672 intergenic not near genes chr2L 7766715 intergenic not near genes chr2L_4_7765001 chr2L_7765001 RAL-859 124 chr2L 7770084 7770100 chr2L 7770215 7770231 4 131 1.0 2.0 1.5 1.6 147 chr2L 7770084 intron CG7191 + chr2L 7770158 intron CG7191 + chr2L 7770231 intron CG7191 + chr2L_4_7770001 chr2L_7770001 RAL-859 125 chr2L 7959041 7959054 chr2L 7960451 7960465 pogo 6 1411 3.5 1.0 2.2 1.9 1424 chr2L 7959041 intron Snoo - chr2L 7959753 intron Snoo - chr2L 7960465 intron Snoo - chr2L_6_7955001 chr2L_7955001 RAL-859 126 chr2L 7973069 7973100 chr2L 7973209 7973241 8 141 1.0 2.0 1.5 3.2 172 chr2L 7973069 intron Snoo - chr2L 7973155 intron Snoo - chr2L 7973241 intron Snoo - chr2L_8_7970001 chr2L_7970001 RAL-859 127 chr2L 7977093 7977111 chr2L 7984068 7984086 297 4 6975 3.0 1.0 2.0 1.3 6993 chr2L 7977093 intron Snoo - chr2L 7980590 intron Snoo - chr2L 7984086 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-859 128 chr2L 8013613 8013632 chr2L 8018818 8018837 copia 6 5204 1.5 0.0 0.8 3.3 5224 chr2L 8013613 intron Tg + chr2L 8016225 intron Tg + chr2L 8018837 intron Tg + chr2L_6_8015001 chr2L_8015001 RAL-859 129 chr2L 8033032 8033052 chr2L 8033125 8033146 12 92 2.5 3.0 2.8 3.2 114 chr2L 8033032 intron,intron CG7367 -,Cka + chr2L 8033089 intron,intron CG7367 -,Cka + chr2L 8033146 intron,intron CG7367 -,Cka + chr2L_12_8030001 chr2L_8030001 RAL-859 130 chr2L 8085303 8085324 chr2L 8085493 8085514 5 190 2.0 4.0 3.0 1.2 211 chr2L 8085303 intron Bsg + chr2L 8085408 intron Bsg + chr2L 8085514 intron Bsg + chr2L_5_8085001 chr2L_8085001 RAL-859 131 chr2L 8089682 8089714 chr2L 8105690 8105721 8 16008 8.0 12.5 10.2 0.7 16039 chr2L 8089682 exon Bsg + chr2L 8097702 intron Bsg + chr2L 8105721 exon Bsg + chr2L_8_8095001 chr2L_8095001 RAL-859 132 chr2L 8105762 8105792 chr2L 8106844 8106875 6 1083 9.0 14.5 11.8 0.5 1113 chr2L 8105762 exon Bsg + chr2L 8106318 intron Bsg + chr2L 8106875 exon Bsg + chr2L_6_8105001 chr2L_8105001 RAL-859 133 chr2L 8106949 8107151 chr2L 8107067 8107268 20 117 22.0 16.0 19.0 1.0 319 chr2L 8106949 exon Bsg + chr2L 8107108 exon Bsg + chr2L 8107268 exon Bsg + chr2L_20_8105001 chr2L_8105001 RAL-859 134 chr2L 8107396 8107419 chr2L 8107758 8107781 4 362 15.5 11.0 13.2 0.3 385 chr2L 8107396 exon Bsg + chr2L 8107588 intron Bsg + chr2L 8107781 exon Bsg + chr2L_4_8105001 chr2L_8105001 RAL-859 135 chr2L 8167711 8167739 chr2L 8167790 8167818 7 78 1.0 2.5 1.8 2.5 107 chr2L 8167711 intron Piezo + chr2L 8167764 intron Piezo + chr2L 8167818 intron Piezo + chr2L_7_8165001 chr2L_8165001 RAL-859 136 chr2L 8285416 8285426 chr2L 8285507 8285517 5 91 3.5 1.5 2.5 1.4 101 chr2L 8285416 intron Btk29A - chr2L 8285466 intron Btk29A - chr2L 8285517 intron Btk29A - chr2L_5_8285001 chr2L_8285001 RAL-859 137 chr2L 8286297 8286321 chr2L 8286384 8286408 8 87 3.5 2.5 3.0 2.0 111 chr2L 8286297 intron Btk29A - chr2L 8286352 intron Btk29A - chr2L 8286408 intron Btk29A - chr2L_8_8285001 chr2L_8285001 RAL-859 138 chr2L 8336936 8336967 chr2L 8337015 8337046 5 78 0.0 0.5 0.2 4.2 110 chr2L 8336936 intergenic not near genes chr2L 8336991 intergenic not near genes chr2L 8337046 intergenic not near genes chr2L_5_8335001 chr2L_8335001 RAL-859 139 chr2L 8345107 8345119 chr2L 8345189 8345201 4 82 3.0 2.0 2.5 1.1 94 chr2L 8345107 intergenic CR45371 - chr2L 8345154 intergenic CR45371 - chr2L 8345201 intergenic CR45371 - chr2L_4_8345001 chr2L_8345001 RAL-859 140 chr2L 8452426 8452447 chr2L 8461597 8461618 roo 4 9171 3.5 4.0 3.8 0.8 9192 chr2L 8452426 intron fu12 - chr2L 8457022 intron fu12 - chr2L 8461618 intron fu12 - chr2L_4_8455001 chr2L_8455001 RAL-859 141 chr2L 8498204 8498227 chr2L 8498285 8498308 7 81 2.5 3.5 3.0 1.8 104 chr2L 8498204 intron Dh31 - chr2L 8498256 intron Dh31 - chr2L 8498308 intron Dh31 - chr2L_7_8495001 chr2L_8495001 RAL-859 142 chr2L 8505158 8505181 chr2L 8505258 8505281 5 100 2.0 3.0 2.5 1.4 123 chr2L 8505158 intron Dh31 - chr2L 8505220 intron Dh31 - chr2L 8505281 intron Dh31 - chr2L_5_8505001 chr2L_8505001 RAL-859 143 chr2L 8723116 8723139 chr2L 8731493 8731516 Tirant 6 8377 4.0 2.0 3.0 1.5 8400 chr2L 8723116 intron raw - chr2L 8727316 intron raw - chr2L 8731516 intron raw - chr2L_6_8725001 chr2L_8725001 RAL-859 144 chr2L 8799799 8799830 chr2L 8799915 8799946 9 116 3.0 1.5 2.2 2.8 147 chr2L 8799799 intergenic not near genes chr2L 8799872 intergenic not near genes chr2L 8799946 intergenic not near genes chr2L_9_8795001 chr2L_8795001 RAL-859 145 chr2L 8857983 8858014 chr2L 8858061 8858091 9 77 3.0 2.5 2.8 2.4 108 chr2L 8857983 intergenic not near genes chr2L 8858037 intergenic not near genes chr2L 8858091 intergenic not near genes chr2L_9_8855001 chr2L_8855001 RAL-859 146 chr2L 8976230 8976249 chr2L 8976322 8976340 4 92 2.5 2.5 2.5 1.1 110 chr2L 8976230 intergenic not near genes chr2L 8976285 intergenic not near genes chr2L 8976340 intergenic not near genes chr2L_4_8975001 chr2L_8975001 RAL-859 147 chr2L 8993215 8993238 chr2L 8993316 8993339 9 101 20.0 18.5 19.2 0.4 124 chr2L 8993215 exon CG9555 + chr2L 8993277 exon CG9555 + chr2L 8993339 3` UTR CG9555 + chr2L_9_8990001 chr2L_8990001 RAL-859 148 chr2L 9000288 9000308 chr2L 9007798 9007818 roo 8 7510 5.5 5.0 5.2 1.3 7530 chr2L 9000288 intergenic Try29F + chr2L 9004053 intergenic not near genes chr2L 9007818 intergenic not near genes chr2L_8_9000001 chr2L_9000001 RAL-859 149 chr2L 9084337 9084340 chr2L 16217660 16217660 8 7133321 8.0 11.5 9.8 0.7 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-859 150 chr2L 9095571 9095596 chr2L 9095658 9095683 9 87 2.0 3.0 2.5 2.6 112 chr2L 9095571 intergenic not near genes chr2L 9095627 intergenic not near genes chr2L 9095683 intergenic not near genes chr2L_9_9095001 chr2L_9095001 RAL-859 151 chr2L 9217971 9218002 chr2L 9222758 9222789 Doc 10 4787 2.5 2.5 2.5 2.9 4818 chr2L 9217971 intron tai + chr2L 9220380 intron tai + chr2L 9222789 intron tai + chr2L_10_9220001 chr2L_9220001 RAL-859 152 chr2L 9251153 9251177 chr2L 9251250 9251274 8 97 0.5 4.5 2.5 2.3 121 chr2L 9251153 intergenic aust -,borr - chr2L 9251214 intergenic aust -,borr - chr2L 9251274 intergenic borr -,aust - chr2L_8_9250001 chr2L_9250001 RAL-859 153 chr2L 9264346 9264377 chr2L 9264446 9264477 8 100 0.5 0.0 0.2 6.7 131 chr2L 9264346 intron Ggamma30A + chr2L 9264412 intron Ggamma30A + chr2L 9264477 intron Ggamma30A + chr2L_8_9260001 chr2L_9260001 RAL-859 154 chr2L 9287325 9287348 chr2L 9287422 9287445 5 97 2.0 2.0 2.0 1.7 120 chr2L 9287325 intron Ggamma30A + chr2L 9287385 intron Ggamma30A + chr2L 9287445 intron Ggamma30A + chr2L_5_9285001 chr2L_9285001 RAL-859 155 chr2L 9297378 9297402 chr2L 9297455 9297478 8 77 1.0 3.0 2.0 2.7 100 chr2L 9297378 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297478 3` UTR Ggamma30A + chr2L_8_9295001 chr2L_9295001 RAL-859 156 chr2L 9391583 9391609 chr2L 9391693 9391719 5 110 1.5 2.5 2.0 1.7 136 chr2L 9391583 intron Shawl - chr2L 9391651 intron Shawl - chr2L 9391719 intron Shawl - chr2L_5_9390001 chr2L_9390001 RAL-859 157 chr2L 9393499 9393531 chr2L 9396465 9396498 jockey 9 2967 2.0 1.0 1.5 3.6 2999 chr2L 9393499 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396498 intron Shawl - chr2L_9_9390001 chr2L_9390001 RAL-859 158 chr2L 9506424 9506450 chr2L 9506574 9506600 6 150 3.0 2.0 2.5 1.7 176 chr2L 9506424 intron CG33298 + chr2L 9506512 intron CG33298 + chr2L 9506600 intron CG33298 + chr2L_6_9505001 chr2L_9505001 RAL-859 159 chr2L 9593355 9593391 chr2L 9593437 9593473 11 82 1.5 5.0 3.2 2.6 118 chr2L 9593355 intergenic not near genes chr2L 9593414 intergenic not near genes chr2L 9593473 intergenic not near genes chr2L_11_9590001 chr2L_9590001 RAL-859 160 chr2L 9809690 9809718 chr2L 9809971 9809999 6 281 2.0 2.5 2.2 1.9 309 chr2L 9809690 intron nAChRalpha6 - chr2L 9809844 intron nAChRalpha6 - chr2L 9809999 intron nAChRalpha6 - chr2L_6_9805001 chr2L_9805001 RAL-859 161 chr2L 9843211 9843228 chr2L 9843292 9843309 6 81 0.0 0.0 0.0 6.0 98 chr2L 9843211 intron nAChRalpha6 - chr2L 9843260 intron nAChRalpha6 - chr2L 9843309 intron nAChRalpha6 - chr2L_6_9840001 chr2L_9840001 RAL-859 162 chr2L 9943368 9943385 chr2L 9943448 9943465 5 80 0.5 1.5 1.0 2.5 97 chr2L 9943368 intron CG5853 - chr2L 9943416 intron CG5853 - chr2L 9943465 intron CG5853 - chr2L_5_9940001 chr2L_9940001 RAL-859 163 chr2L 9973725 9973758 chr2L 9980843 9980877 HMS-Beagle 7 7117 3.5 4.0 3.8 1.5 7152 chr2L 9973725 intergenic not near genes chr2L 9977301 intergenic not near genes chr2L 9980877 intergenic not near genes chr2L_7_9975001 chr2L_9975001 RAL-859 164 chr2L 9991180 9991211 chr2L 9991284 9991314 11 103 2.0 3.0 2.5 3.1 134 chr2L 9991180 intron bib + chr2L 9991247 intron bib + chr2L 9991314 intron bib + chr2L_11_9990001 chr2L_9990001 RAL-859 165 chr2L 10040849 10040879 chr2L 10041032 10041062 12 182 2.0 4.0 3.0 3.0 213 chr2L 10040849 intergenic not near genes chr2L 10040956 intergenic not near genes chr2L 10041062 intergenic not near genes chr2L_12_10040001 chr2L_10040001 RAL-859 166 chr2L 10051728 10051748 chr2L 10051813 10051833 6 85 6.0 1.0 3.5 1.3 105 chr2L 10051728 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051833 5` UTR CR44874 + chr2L_6_10050001 chr2L_10050001 RAL-859 167 chr2L 10152104 10152134 chr2L 10152463 10152493 7 358 2.5 5.0 3.8 1.5 389 chr2L 10152104 intron,intron CG44153 -,CG4839 + chr2L 10152298 intron,intron CG44153 -,CG4839 + chr2L 10152493 intron,intron CG44153 -,CG4839 + chr2L_7_10150001 chr2L_10150001 RAL-859 168 chr2L 10156321 10156352 chr2L 10163791 10163822 blood 11 7470 3.0 2.0 2.5 3.1 7501 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163822 intron CG44153 - chr2L_11_10160001 chr2L_10160001 RAL-859 169 chr2L 10554325 10554352 chr2L 10554408 10554435 5 83 0.5 1.0 0.8 2.8 110 chr2L 10554325 intron Trim9 + chr2L 10554380 intron Trim9 + chr2L 10554435 intron Trim9 + chr2L_5_10550001 chr2L_10550001 RAL-859 170 chr2L 10571958 10571984 chr2L 10572087 10572112 5 129 3.5 3.0 3.2 1.2 154 chr2L 10571958 intron Trim9 + chr2L 10572035 intron Trim9 + chr2L 10572112 intron Trim9 + chr2L_5_10570001 chr2L_10570001 RAL-859 171 chr2L 10572703 10572735 chr2L 10572784 10572816 10 81 1.0 3.0 2.0 3.3 113 chr2L 10572703 intron Trim9 + chr2L 10572760 intron Trim9 + chr2L 10572816 intron Trim9 + chr2L_10_10570001 chr2L_10570001 RAL-859 172 chr2L 10580790 10580817 chr2L 10580871 10580898 4 80 4.0 1.5 2.8 1.1 108 chr2L 10580790 intron Trim9 + chr2L 10580844 intron Trim9 + chr2L 10580898 intron Trim9 + chr2L_4_10580001 chr2L_10580001 RAL-859 173 chr2L 10592840 10592875 chr2L 10600502 10600536 opus 5 7662 1.0 2.0 1.5 2.0 7696 chr2L 10592840 intron Trim9 + chr2L 10596688 intron Trim9 + chr2L 10600536 intron Trim9 + chr2L_5_10595001 chr2L_10595001 RAL-859 174 chr2L 10606634 10606662 chr2L 10606755 10606781 5 120 0.5 3.0 1.8 1.8 147 chr2L 10606634 intron Trim9 + chr2L 10606708 intron Trim9 + chr2L 10606781 intron Trim9 + chr2L_5_10605001 chr2L_10605001 RAL-859 175 chr2L 10656591 10656608 chr2L 10656667 10656684 4 76 1.5 1.0 1.2 1.8 93 chr2L 10656591 intergenic not near genes chr2L 10656638 intergenic not near genes chr2L 10656684 intergenic not near genes chr2L_4_10655001 chr2L_10655001 RAL-859 176 chr2L 10673742 10673766 chr2L 10673824 10673848 5 82 2.0 3.0 2.5 1.4 106 chr2L 10673742 intergenic not near genes chr2L 10673795 intergenic not near genes chr2L 10673848 intergenic not near genes chr2L_5_10670001 chr2L_10670001 RAL-859 177 chr2L 10715075 10715101 chr2L 10715151 10715176 7 76 1.5 1.5 1.5 2.8 101 chr2L 10715075 intergenic not near genes chr2L 10715126 intergenic not near genes chr2L 10715176 intergenic not near genes chr2L_7_10715001 chr2L_10715001 RAL-859 178 chr2L 10850153 10850175 chr2L 10850248 10850270 6 95 0.0 3.0 1.5 2.4 117 chr2L 10850153 5` UTR,5` UTR porin -,CG43129 + chr2L 10850212 5` UTR,5` UTR porin -,CG43129 + chr2L 10850270 5` UTR,intron porin -,CG43129 + chr2L_6_10850001 chr2L_10850001 RAL-859 179 chr2L 10862846 10862875 chr2L 10864458 10864489 Rt1c 10 1614 1.5 5.5 3.5 2.2 1643 chr2L 10862846 3` UTR CR43807 - chr2L 10863668 intron CR43807 - chr2L 10864489 3` UTR CR43807 - chr2L_10_10860001 chr2L_10860001 RAL-859 180 chr2L 10912988 10913001 chr2L 10913067 10913080 4 79 4.0 1.0 2.5 1.1 92 chr2L 10912988 intergenic not near genes chr2L 10913034 intergenic not near genes chr2L 10913080 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-859 181 chr2L 10946951 10946975 chr2L 10956166 10956190 roo 10 9214 3.5 7.0 5.2 1.6 9239 chr2L 10946951 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956190 intron dpr2 - chr2L_10_10950001 chr2L_10950001 RAL-859 182 chr2L 11292377 11292401 chr2L 11292459 11292483 5 82 2.5 2.5 2.5 1.4 106 chr2L 11292377 intergenic not near genes chr2L 11292430 intergenic not near genes chr2L 11292483 intergenic not near genes chr2L_5_11290001 chr2L_11290001 RAL-859 183 chr2L 11380611 11380643 chr2L 11380688 11380720 4 77 2.5 1.0 1.8 1.4 109 chr2L 11380611 intergenic not near genes chr2L 11380666 intergenic not near genes chr2L 11380720 intergenic not near genes chr2L_4_11380001 chr2L_11380001 RAL-859 184 chr2L 11540589 11540614 chr2L 11547991 11548016 Tabor 8 7402 1.0 1.5 1.2 3.6 7427 chr2L 11540589 intergenic not near genes chr2L 11544302 intergenic not near genes chr2L 11548016 intergenic not near genes chr2L_8_11540001 chr2L_11540001 RAL-859 185 chr2L 11563650 11563670 chr2L 11568854 11568874 copia 7 5203 1.0 1.5 1.2 3.2 5224 chr2L 11563650 intergenic not near genes chr2L 11566262 intergenic not near genes chr2L 11568874 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-859 186 chr2L 11614051 11614064 chr2L 11615546 11615559 hopper2 5 1495 4.0 1.5 2.8 1.3 1508 chr2L 11614051 intron kek2 + chr2L 11614805 intron kek2 + chr2L 11615559 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-859 187 chr2L 11713505 11713540 chr2L 11720973 11721008 blood 12 7468 1.5 2.5 2.0 4.0 7503 chr2L 11713505 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721008 intergenic CR44143 + chr2L_12_11715001 chr2L_11715001 RAL-859 188 chr2L 11723095 11723126 chr2L 11723176 11723207 5 81 1.5 2.0 1.8 1.8 112 chr2L 11723095 intergenic not near genes chr2L 11723151 intergenic not near genes chr2L 11723207 intergenic not near genes chr2L_5_11720001 chr2L_11720001 RAL-859 189 chr2L 12132736 12132746 chr2L 12132822 12132831 4 86 0.0 2.0 1.0 2.0 95 chr2L 12132736 intron rho-6 - chr2L 12132784 intron rho-6 - chr2L 12132831 intron rho-6 - chr2L_4_12130001 chr2L_12130001 RAL-859 190 chr2L 12233740 12233768 chr2L 12233818 12233846 7 77 2.5 2.5 2.5 2.0 106 chr2L 12233740 intron aret + chr2L 12233793 intron aret + chr2L 12233846 intron aret + chr2L_7_12230001 chr2L_12230001 RAL-859 191 chr2L 12234032 12234051 chr2L 12234126 12234146 7 95 2.0 1.5 1.8 2.5 114 chr2L 12234032 intron aret + chr2L 12234089 intron aret + chr2L 12234146 intron aret + chr2L_7_12230001 chr2L_12230001 RAL-859 192 chr2L 12305419 12305434 chr2L 12305507 12305522 8 88 3.5 3.5 3.5 1.8 103 chr2L 12305419 intron aret + chr2L 12305470 intron aret + chr2L 12305522 intron aret + chr2L_8_12305001 chr2L_12305001 RAL-859 193 chr2L 12349635 12349654 chr2L 12349729 12349748 4 94 1.5 1.5 1.5 1.6 113 chr2L 12349635 intron bru-2 + chr2L 12349692 intron bru-2 + chr2L 12349748 intron bru-2 + chr2L_4_12345001 chr2L_12345001 RAL-859 194 chr2L 12366867 12366890 chr2L 12366953 12366976 5 86 0.5 2.0 1.2 2.3 109 chr2L 12366867 intron bru-2 + chr2L 12366922 intron bru-2 + chr2L 12366976 intron bru-2 + chr2L_5_12365001 chr2L_12365001 RAL-859 195 chr2L 12426137 12426161 chr2L 12426220 12426243 10 82 3.5 4.5 4.0 2.0 106 chr2L 12426137 exon CG6405 + chr2L 12426190 exon CG6405 + chr2L 12426243 exon CG6405 + chr2L_10_12425001 chr2L_12425001 RAL-859 196 chr2L 12487884 12487918 chr2L 12487965 12487997 9 81 3.0 2.5 2.8 2.4 113 chr2L 12487884 intron bun - chr2L 12487940 intron bun - chr2L 12487997 intron bun - chr2L_9_12485001 chr2L_12485001 RAL-859 197 chr2L 12529247 12529447 chr2L 12529380 12529521 6 85 0.5 1.0 0.8 3.3 274 chr2L 12529247 intron bun - chr2L 12529384 intron bun - chr2L 12529521 intron bun - chr2L_6_12525001 chr2L_12525001 RAL-859 198 chr2L 12558336 12558353 chr2L 12565465 12565482 HMS-Beagle 4 7129 1.0 4.5 2.8 1.1 7146 chr2L 12558336 intergenic not near genes chr2L 12561909 intergenic not near genes chr2L 12565482 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-859 199 chr2L 12731066 12731090 chr2L 12735833 12735856 F-element 12 4767 2.0 2.0 2.0 4.0 4790 chr2L 12731066 intron MRP + chr2L 12733461 intron MRP + chr2L 12735856 intron MRP + chr2L_12_12730001 chr2L_12730001 RAL-859 200 chr2L 12739174 12739202 chr2L 12743955 12743983 Doc 4 4781 3.0 3.5 3.2 1.0 4809 chr2L 12739174 exon MRP + chr2L 12741578 intron MRP + chr2L 12743983 exon MRP + chr2L_4_12740001 chr2L_12740001 RAL-859 201 chr2L 12751311 12751341 chr2L 12751393 12751424 8 82 2.0 1.5 1.8 2.9 113 chr2L 12751311 intergenic not near genes chr2L 12751368 intergenic not near genes chr2L 12751424 intergenic not near genes chr2L_8_12750001 chr2L_12750001 RAL-859 202 chr2L 12791603 12791630 chr2L 12795278 12795305 F-element 7 3675 3.0 2.5 2.8 1.8 3702 chr2L 12791603 intergenic not near genes chr2L 12793454 intergenic not near genes chr2L 12795305 intergenic not near genes chr2L_7_12790001 chr2L_12790001 RAL-859 203 chr2L 12848456 12848464 chr2L 12848544 12848551 5 87 0.0 10.5 5.2 0.8 95 chr2L 12848456 intergenic not near genes chr2L 12848504 intergenic not near genes chr2L 12848551 intergenic not near genes chr2L_5_12845001 chr2L_12845001 RAL-859 204 chr2L 12855298 12855324 chr2L 12855383 12855409 6 85 0.0 1.0 0.5 4.0 111 chr2L 12855298 intergenic not near genes chr2L 12855354 intergenic not near genes chr2L 12855409 intergenic not near genes chr2L_6_12855001 chr2L_12855001 RAL-859 205 chr2L 12861697 12861723 chr2L 12863164 12863188 hobo 4 1466 3.0 3.0 3.0 1.0 1491 chr2L 12861697 intergenic not near genes chr2L 12862442 intergenic not near genes chr2L 12863188 intergenic not near genes chr2L_4_12860001 chr2L_12860001 RAL-859 206 chr2L 12890756 12890771 chr2L 12890843 12890857 4 87 0.0 3.0 1.5 1.6 101 chr2L 12890756 intergenic not near genes chr2L 12890806 intergenic not near genes chr2L 12890857 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-859 207 chr2L 12894016 12894053 chr2L 12895482 12895520 hobo 7 1465 4.0 3.5 3.8 1.5 1504 chr2L 12894016 intergenic not near genes chr2L 12894768 intergenic not near genes chr2L 12895520 intergenic not near genes chr2L_7_12890001 chr2L_12890001 RAL-859 208 chr2L 12905482 12905496 chr2L 12905565 12905580 4 84 2.5 1.0 1.8 1.4 98 chr2L 12905482 intergenic not near genes chr2L 12905531 intergenic not near genes chr2L 12905580 intergenic not near genes chr2L_4_12905001 chr2L_12905001 RAL-859 209 chr2L 12933853 12933881 chr2L 12941320 12941348 blood 11 7467 2.0 5.0 3.5 2.4 7495 chr2L 12933853 intergenic not near genes chr2L 12937600 intergenic not near genes chr2L 12941348 intergenic not near genes chr2L_11_12935001 chr2L_12935001 RAL-859 210 chr2L 13273865 13273879 chr2L 13273939 13273956 5 75 1.0 5.5 3.2 1.2 91 chr2L 13273865 exon CG44085 + chr2L 13273910 exon CG44085 + chr2L 13273956 exon CG44085 + chr2L_5_13270001 chr2L_13270001 RAL-859 211 chr2L 13321902 13321932 chr2L 13321991 13322021 8 89 1.0 3.5 2.2 2.5 119 chr2L 13321902 intron CG43778 - chr2L 13321962 intron CG43778 - chr2L 13322021 intron CG43778 - chr2L_8_13320001 chr2L_13320001 RAL-859 212 chr2L 13323156 13323177 chr2L 13324161 13324183 7 1006 0.5 3.5 2.0 2.3 1027 chr2L 13323156 intron CG43778 - chr2L 13323670 intron CG43778 - chr2L 13324183 intron CG43778 - chr2L_7_13320001 chr2L_13320001 RAL-859 213 chr2L 13341780 13341802 chr2L 13342393 13342415 6 613 2.5 1.5 2.0 2.0 635 chr2L 13341780 intergenic not near genes chr2L 13342098 intergenic not near genes chr2L 13342415 intergenic not near genes chr2L_6_13340001 chr2L_13340001 RAL-859 214 chr2L 13405649 13405679 chr2L 13410444 13410476 Doc 6 4797 4.5 3.0 3.8 1.2 4827 chr2L 13405649 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_6_13405001 chr2L_13405001 RAL-859 215 chr2L 13481449 13481462 chr2L 13482055 13482069 jockey 7 607 6.0 2.5 4.2 1.3 620 chr2L 13481449 intron CG42784 + chr2L 13481759 intron CG42784 + chr2L 13482069 intron CG42784 + chr2L_7_13480001 chr2L_13480001 RAL-859 216 chr2L 13609543 13609569 chr2L 13609705 13609733 6 164 1.0 1.0 1.0 3.0 190 chr2L 13609543 intron kuz + chr2L 13609638 intron kuz + chr2L 13609733 intron kuz + chr2L_6_13605001 chr2L_13605001 RAL-859 217 chr2L 13622135 13622168 chr2L 13622234 13622267 8 99 1.5 0.5 1.0 4.0 132 chr2L 13622135 intron kuz + chr2L 13622201 intron kuz + chr2L 13622267 intron kuz + chr2L_8_13620001 chr2L_13620001 RAL-859 218 chr2L 13680431 13680456 chr2L 13680833 13680860 8 404 3.0 0.5 1.8 2.9 429 chr2L 13680431 intron CG31814 - chr2L 13680646 intron CG31814 - chr2L 13680860 intron CG31814 - chr2L_8_13680001 chr2L_13680001 RAL-859 219 chr2L 13752805 13752829 chr2L 13752923 13752947 8 117 3.0 3.0 3.0 2.0 142 chr2L 13752805 intron,intron CR44846 +,TM9SF4 + chr2L 13752876 intron,intron CR44846 +,TM9SF4 + chr2L 13752947 intron,intron CR44846 +,TM9SF4 + chr2L_8_13750001 chr2L_13750001 RAL-859 220 chr2L 13761812 13761831 chr2L 13762923 13762941 Doc 7 1111 4.5 3.5 4.0 1.4 1129 chr2L 13761812 intron TM9SF4 + chr2L 13762376 intron TM9SF4 + chr2L 13762941 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-859 221 chr2L 13913589 13913603 chr2L 13913702 13913716 7 113 4.0 2.0 3.0 1.8 127 chr2L 13913589 intergenic not near genes chr2L 13913652 intergenic not near genes chr2L 13913716 intergenic not near genes chr2L_7_13910001 chr2L_13910001 RAL-859 222 chr2L 13944410 13944434 chr2L 13944530 13944554 5 120 0.0 0.5 0.2 4.2 144 chr2L 13944410 intron Ance-3 + chr2L 13944482 intron Ance-3 + chr2L 13944554 intron Ance-3 + chr2L_5_13940001 chr2L_13940001 RAL-859 223 chr2L 13949715 13949733 chr2L 13949866 13949884 6 151 2.0 4.0 3.0 1.5 169 chr2L 13949715 intron Ance-3 + chr2L 13949800 intron Ance-3 + chr2L 13949884 intron Ance-3 + chr2L_6_13945001 chr2L_13945001 RAL-859 224 chr2L 13988281 13988304 chr2L 13988368 13988391 4 87 1.0 2.0 1.5 1.6 110 chr2L 13988281 intron rk - chr2L 13988336 intron rk - chr2L 13988391 intron rk - chr2L_4_13985001 chr2L_13985001 RAL-859 225 chr2L 14079157 14079191 chr2L 14079694 14079728 8 536 1.0 2.5 1.8 2.9 571 chr2L 14079157 intron nAChRalpha5 + chr2L 14079442 intron nAChRalpha5 + chr2L 14079728 intron nAChRalpha5 + chr2L_8_14075001 chr2L_14075001 RAL-859 226 chr2L 14222313 14222328 chr2L 14222399 14222415 7 87 0.5 1.5 1.0 3.5 102 chr2L 14222313 intron Dyrk2 - chr2L 14222364 intron Dyrk2 - chr2L 14222415 intron Dyrk2 - chr2L_7_14220001 chr2L_14220001 RAL-859 227 chr2L 14236241 14236254 chr2L 14236338 14236350 5 97 3.5 0.0 1.8 1.8 109 chr2L 14236241 5` UTR CR44728 + chr2L 14236296 5` UTR CR44728 + chr2L 14236350 intergenic CR44728 + chr2L_5_14235001 chr2L_14235001 RAL-859 228 chr2L 14358388 14358396 chr2L 14358482 14358490 4 94 0.0 3.0 1.5 1.6 102 chr2L 14358388 intergenic Rab14 + chr2L 14358439 intergenic Rab14 + chr2L 14358490 intergenic Rab14 + chr2L_4_14355001 chr2L_14355001 RAL-859 229 chr2L 14378649 14378678 chr2L 14378728 14378757 8 79 2.5 0.0 1.2 3.6 108 chr2L 14378649 3` UTR ppk - chr2L 14378703 3` UTR ppk - chr2L 14378757 3` UTR ppk - chr2L_8_14375001 chr2L_14375001 RAL-859 230 chr2L 14396202 14396229 chr2L 14398958 14398985 5 2756 9.5 12.5 11.0 0.4 2783 chr2L 14396202 intron elB - chr2L 14397594 intron elB - chr2L 14398985 intron elB - chr2L_5_14395001 chr2L_14395001 RAL-859 231 chr2L 14396029 14396057 chr2L 14399138 14399166 7 3109 10.0 21.0 15.5 0.4 3137 chr2L 14396029 intron elB - chr2L 14397598 intron elB - chr2L 14399166 intron elB - chr2L_7_14395001 chr2L_14395001 RAL-859 232 chr2L 14524618 14524651 chr2L 14525116 14525149 6 498 1.5 1.0 1.2 2.7 531 chr2L 14524618 intron CG33648 + chr2L 14524884 intron CG33648 + chr2L 14525149 exon CG33648 + chr2L_6_14520001 chr2L_14520001 RAL-859 233 chr2L 14554168 14554195 chr2L 14554245 14554272 9 77 3.0 1.5 2.2 2.8 104 chr2L 14554168 intergenic not near genes chr2L 14554220 intergenic not near genes chr2L 14554272 intergenic not near genes chr2L_9_14550001 chr2L_14550001 RAL-859 234 chr2L 14588384 14588416 chr2L 14588536 14588569 8 154 2.5 1.0 1.8 2.9 185 chr2L 14588384 intergenic CG42680 - chr2L 14588476 intergenic CG42680 - chr2L 14588569 intergenic CG42680 - chr2L_8_14585001 chr2L_14585001 RAL-859 235 chr2L 14642579 14642603 chr2L 14651742 14651766 roo 9 9163 2.5 3.5 3.0 2.2 9187 chr2L 14642579 intron osp - chr2L 14647172 intron osp - chr2L 14651766 intron osp - chr2L_9_14645001 chr2L_14645001 RAL-859 236 chr2L 14721607 14721631 chr2L 14721685 14721709 5 78 2.0 3.5 2.8 1.3 102 chr2L 14721607 intergenic not near genes chr2L 14721658 intergenic not near genes chr2L 14721709 intergenic not near genes chr2L_5_14720001 chr2L_14720001 RAL-859 237 chr2L 14771831 14771848 chr2L 14771914 14771930 7 83 0.0 1.0 0.5 4.7 99 chr2L 14771831 intergenic not near genes chr2L 14771880 intergenic not near genes chr2L 14771930 intergenic not near genes chr2L_7_14770001 chr2L_14770001 RAL-859 238 chr2L 14839753 14839771 chr2L 14839829 14839847 5 76 2.0 1.5 1.8 1.8 94 chr2L 14839753 intergenic not near genes chr2L 14839800 intergenic not near genes chr2L 14839847 intergenic not near genes chr2L_5_14835001 chr2L_14835001 RAL-859 239 chr2L 14840975 14841000 chr2L 14841062 14841087 7 87 0.5 1.0 0.8 3.9 112 chr2L 14840975 3` UTR CR43805 - chr2L 14841031 3` UTR CR43805 - chr2L 14841087 3` UTR CR43805 - chr2L_7_14840001 chr2L_14840001 RAL-859 240 chr2L 14889952 14889988 chr2L 14890377 14890413 jockey 7 425 2.5 2.0 2.2 2.2 461 chr2L 14889952 intergenic not near genes chr2L 14890182 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_7_14890001 chr2L_14890001 RAL-859 241 chr2L 14901519 14901549 chr2L 14901618 14901647 8 99 3.5 4.5 4.0 1.6 128 chr2L 14901519 intergenic not near genes chr2L 14901583 intergenic not near genes chr2L 14901647 intergenic not near genes chr2L_8_14900001 chr2L_14900001 RAL-859 242 chr2L 14920039 14920058 chr2L 14920118 14920137 8 79 2.0 3.5 2.8 2.1 98 chr2L 14920039 intron CG42313 - chr2L 14920088 intron CG42313 - chr2L 14920137 intron CG42313 - chr2L_8_14920001 chr2L_14920001 RAL-859 243 chr2L 15004190 15004195 chr2L 15004278 15004283 4 88 2.5 2.5 2.5 1.1 93 chr2L 15004190 intergenic not near genes chr2L 15004236 intergenic not near genes chr2L 15004283 intergenic not near genes chr2L_4_15000001 chr2L_15000001 RAL-859 244 chr2L 15211117 15211133 chr2L 15211195 15211210 5 77 2.5 4.0 3.2 1.2 93 chr2L 15211117 intergenic not near genes chr2L 15211164 intergenic not near genes chr2L 15211210 intergenic not near genes chr2L_5_15210001 chr2L_15210001 RAL-859 245 chr2L 15446049 15446083 chr2L 15453518 15453552 blood 8 7469 2.5 1.5 2.0 2.7 7503 chr2L 15446049 intergenic not near genes chr2L 15449800 intergenic not near genes chr2L 15453552 intergenic not near genes chr2L_8_15445001 chr2L_15445001 RAL-859 246 chr2L 15586410 15586442 chr2L 15593462 15593494 297 7 7052 0.5 1.5 1.0 3.5 7084 chr2L 15586410 intergenic not near genes chr2L 15589952 intergenic not near genes chr2L 15593494 intergenic not near genes chr2L_7_15585001 chr2L_15585001 RAL-859 247 chr2L 15790188 15790207 chr2L 15790264 15790282 7 76 0.5 1.0 0.8 3.9 94 chr2L 15790188 intergenic CG18109 + chr2L 15790235 intergenic CG18109 + chr2L 15790282 intergenic CG18109 + chr2L_7_15790001 chr2L_15790001 RAL-859 248 chr2L 15823352 15823371 chr2L 15823428 15823447 5 76 2.0 0.0 1.0 2.5 95 chr2L 15823352 intergenic CR44601 - chr2L 15823400 intergenic CR44601 - chr2L 15823447 intergenic not near genes chr2L_5_15820001 chr2L_15820001 RAL-859 249 chr2L 15870281 15870302 chr2L 15870450 15870471 4 169 1.0 2.0 1.5 1.6 190 chr2L 15870281 intergenic not near genes chr2L 15870376 intergenic not near genes chr2L 15870471 intergenic not near genes chr2L_4_15870001 chr2L_15870001 RAL-859 250 chr2L 15956023 15956047 chr2L 15957490 15957513 hobo 8 1467 4.5 1.0 2.8 2.1 1490 chr2L 15956023 intron beat-Ib - chr2L 15956768 intron beat-Ib - chr2L 15957513 intron beat-Ib - chr2L_8_15955001 chr2L_15955001 RAL-859 251 chr2L 14672881 14672885 chr2L 16071771 16071771 5 1398888 3.5 13.0 8.2 0.5 1398890 chr2L 14672881 intron osp - chr2L 15372326 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_5_15370001 chr2L_15370001 RAL-859 252 chr2L 16071771 16071771 chr2L 16217660 16217661 copia 13 145889 14.5 11.5 13.0 0.9 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_13_16140001 chr2L_16140001 RAL-859 253 chr2L 16141168 16141196 chr2L 16146375 16146403 copia 4 5207 0.5 4.0 2.2 1.2 5235 chr2L 16141168 intergenic not near genes chr2L 16143786 intergenic not near genes chr2L 16146403 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-859 254 chr2L 16146699 16146721 chr2L 16146780 16146803 6 81 3.5 2.5 3.0 1.5 104 chr2L 16146699 intergenic not near genes chr2L 16146751 intergenic not near genes chr2L 16146803 intergenic not near genes chr2L_6_16145001 chr2L_16145001 RAL-859 255 chr2L 16153734 16153744 chr2L 16160788 16160798 297 6 7054 4.0 3.5 3.8 1.2 7064 chr2L 16153734 intergenic not near genes chr2L 16157266 intergenic not near genes chr2L 16160798 intergenic not near genes chr2L_6_16155001 chr2L_16155001 RAL-859 256 chr2L 16197117 16197145 chr2L 16197793 16197821 5 676 3.0 2.0 2.5 1.4 704 chr2L 16197117 intergenic not near genes chr2L 16197469 intergenic not near genes chr2L 16197821 intergenic not near genes chr2L_5_16195001 chr2L_16195001 RAL-859 257 chr2L 7862104 7862104 chr2L 16217660 16217660 4 8355556 11.0 11.5 11.2 0.3 8355556 chr2L 7862104 intergenic not near genes chr2L 12039882 exon CG6766 - chr2L 16217660 intergenic not near genes chr2L_4_12035001 chr2L_12035001 RAL-859 258 chr2L 9084336 9084340 chr2L 16217660 16217660 17 7133321 8.0 11.5 9.8 1.6 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_17_12650001 chr2L_12650001 RAL-859 259 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 7 145889 14.5 11.5 13.0 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-859 260 chr2L 16217660 16217660 chr2L 18622718 18622719 6 2405059 11.0 11.0 11.0 0.5 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-859 261 chr2L 16224804 16224914 chr2L 16224914 16225055 9 113 0.0 0.0 0.0 9.0 251 chr2L 16224804 intergenic not near genes chr2L 16224930 intergenic not near genes chr2L 16225055 intergenic not near genes chr2L_9_16220001 chr2L_16220001 RAL-859 262 chr2L 16226192 16226207 chr2L 16226279 16226294 5 87 1.5 3.0 2.2 1.6 102 chr2L 16226192 intergenic not near genes chr2L 16226243 intergenic not near genes chr2L 16226294 intergenic not near genes chr2L_5_16225001 chr2L_16225001 RAL-859 263 chr2L 16243694 16243847 chr2L 16243777 16243942 8 87 1.0 0.5 0.8 4.4 248 chr2L 16243694 exon CG42818 + chr2L 16243818 exon CG42818 + chr2L 16243942 exon CG42818 + chr2L_8_16240001 chr2L_16240001 RAL-859 264 chr2L 16254895 16254915 chr2L 16255154 16255171 4 258 0.0 1.0 0.5 2.7 276 chr2L 16254895 intron PRL-1 - chr2L 16255033 intron PRL-1 - chr2L 16255171 intron PRL-1 - chr2L_4_16255001 chr2L_16255001 RAL-859 265 chr2L 16280257 16280284 chr2L 16281428 16281455 1360 11 1170 2.0 5.0 3.5 2.4 1198 chr2L 16280257 intron crp - chr2L 16280856 intron crp - chr2L 16281455 intron crp - chr2L_11_16280001 chr2L_16280001 RAL-859 266 chr2L 16504997 16505010 chr2L 16505107 16505120 7 110 0.0 2.0 1.0 3.5 123 chr2L 16504997 intron Tpr2 + chr2L 16505058 intron Tpr2 + chr2L 16505120 intron Tpr2 + chr2L_7_16505001 chr2L_16505001 RAL-859 267 chr2L 16511963 16511986 chr2L 16519076 16519100 HMS-Beagle 4 7114 1.0 4.5 2.8 1.1 7137 chr2L 16511963 intron CG5953 - chr2L 16515532 intron CG5953 - chr2L 16519100 intron CG5953 - chr2L_4_16515001 chr2L_16515001 RAL-859 268 chr2L 16721340 16721371 chr2L 16721429 16721458 7 89 0.5 1.0 0.8 3.9 118 chr2L 16721340 intron Cyt-c-p + chr2L 16721399 intron Cyt-c-p + chr2L 16721458 intron Cyt-c-p + chr2L_7_16720001 chr2L_16720001 RAL-859 269 chr2L 16958106 16958130 chr2L 16962894 16962918 Doc 4 4788 1.0 3.0 2.0 1.3 4812 chr2L 16958106 intergenic not near genes chr2L 16960512 intergenic not near genes chr2L 16962918 intergenic not near genes chr2L_4_16960001 chr2L_16960001 RAL-859 270 chr2L 16995518 16995549 chr2L 16995598 16995629 12 80 2.0 1.5 1.8 4.3 111 chr2L 16995518 intergenic not near genes chr2L 16995574 intergenic not near genes chr2L 16995629 intergenic not near genes chr2L_12_16995001 chr2L_16995001 RAL-859 271 chr2L 17000124 17000144 chr2L 17000246 17000266 6 122 4.0 2.5 3.2 1.4 142 chr2L 17000124 intergenic not near genes chr2L 17000195 intergenic not near genes chr2L 17000266 intergenic not near genes chr2L_6_17000001 chr2L_17000001 RAL-859 272 chr2L 17120848 17120868 chr2L 17120926 17120947 4 79 2.0 2.0 2.0 1.3 99 chr2L 17120848 intergenic not near genes chr2L 17120898 intergenic not near genes chr2L 17120947 intergenic not near genes chr2L_4_17120001 chr2L_17120001 RAL-859 273 chr2L 17167582 17167596 chr2L 17167823 17167837 pogo 5 241 1.0 2.5 1.8 1.8 255 chr2L 17167582 intron,intron CG34106 +,beat-IIIa + chr2L 17167710 intron,intron CG34106 +,beat-IIIa + chr2L 17167837 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-859 274 chr2L 17273190 17273223 chr2L 17277973 17278006 F-element 13 4783 5.0 1.5 3.2 3.1 4816 chr2L 17273190 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278006 intergenic not near genes chr2L_13_17275001 chr2L_17275001 RAL-859 275 chr2L 17303436 17303464 chr2L 17303614 17303637 8 177 1.5 0.5 1.0 4.0 201 chr2L 17303436 intergenic not near genes chr2L 17303536 intergenic not near genes chr2L 17303637 intergenic not near genes chr2L_8_17300001 chr2L_17300001 RAL-859 276 chr2L 17327912 17327929 chr2L 17327998 17328015 10 86 3.5 3.5 3.5 2.2 103 chr2L 17327912 intergenic not near genes chr2L 17327964 intergenic not near genes chr2L 17328015 intergenic not near genes chr2L_10_17325001 chr2L_17325001 RAL-859 277 chr2L 17360027 17360036 chr2L 17360205 17360214 6 178 1.5 0.0 0.8 3.3 187 chr2L 17360027 intergenic not near genes chr2L 17360120 intergenic not near genes chr2L 17360214 intergenic not near genes chr2L_6_17360001 chr2L_17360001 RAL-859 278 chr2L 17399883 17399910 chr2L 17400163 17400188 5 279 2.0 2.0 2.0 1.7 305 chr2L 17399883 intron CLIP-190 + chr2L 17400036 intron CLIP-190 + chr2L 17400188 intron CLIP-190 + chr2L_5_17400001 chr2L_17400001 RAL-859 279 chr2L 17424261 17424286 chr2L 17424419 17424444 5 158 2.5 0.5 1.5 2.0 183 chr2L 17424261 intron Dif - chr2L 17424352 intron Dif - chr2L 17424444 intron Dif - chr2L_5_17420001 chr2L_17420001 RAL-859 280 chr2L 17575379 17575387 chr2L 17578640 17578648 4 3261 20.0 25.0 22.5 0.2 3269 chr2L 17575379 3` UTR CR45358 - chr2L 17577014 intergenic not near genes chr2L 17578648 intergenic not near genes chr2L_4_17575001 chr2L_17575001 RAL-859 281 chr2L 17664651 17664675 chr2L 17664756 17664779 5 105 3.5 0.5 2.0 1.7 128 chr2L 17664651 intron CadN - chr2L 17664715 intron CadN - chr2L 17664779 intron CadN - chr2L_5_17660001 chr2L_17660001 RAL-859 282 chr2L 17680994 17681022 chr2L 17681069 17681098 6 76 1.0 0.0 0.5 4.0 104 chr2L 17680994 intron CadN - chr2L 17681046 intron CadN - chr2L 17681098 intron CadN - chr2L_6_17680001 chr2L_17680001 RAL-859 283 chr2L 17773184 17773200 chr2L 17773340 17773357 6 157 2.0 5.0 3.5 1.3 173 chr2L 17773184 intron CadN - chr2L 17773270 intron CadN - chr2L 17773357 intron CadN - chr2L_6_17770001 chr2L_17770001 RAL-859 284 chr2L 17792952 17792975 chr2L 17793308 17793331 4 356 4.0 6.0 5.0 0.7 379 chr2L 17792952 intron,5` UTR CadN2 -,CR43419 + chr2L 17793142 intron,5` UTR CadN2 -,CR43419 + chr2L 17793331 intron,5` UTR CadN2 -,CR43419 + chr2L_4_17790001 chr2L_17790001 RAL-859 285 chr2L 17795313 17795342 chr2L 17795417 17795446 7 104 0.5 1.0 0.8 3.9 133 chr2L 17795313 intron CadN2 - chr2L 17795380 intron CadN2 - chr2L 17795446 intron CadN2 - chr2L_7_17795001 chr2L_17795001 RAL-859 286 chr2L 17819920 17819955 chr2L 17825123 17825155 copia 4 5202 2.5 3.0 2.8 1.1 5235 chr2L 17819920 intron CadN2 - chr2L 17822538 intron CadN2 - chr2L 17825155 intron CadN2 - chr2L_4_17820001 chr2L_17820001 RAL-859 287 chr2L 17880006 17880025 chr2L 17880093 17880112 6 87 2.5 1.0 1.8 2.1 106 chr2L 17880006 intergenic not near genes chr2L 17880059 intergenic not near genes chr2L 17880112 intergenic not near genes chr2L_6_17880001 chr2L_17880001 RAL-859 288 chr2L 17891465 17891490 chr2L 17891543 17891568 8 78 1.0 2.0 1.5 3.2 103 chr2L 17891465 intergenic not near genes chr2L 17891516 intergenic not near genes chr2L 17891568 intergenic not near genes chr2L_8_17890001 chr2L_17890001 RAL-859 289 chr2L 17944417 17944452 chr2L 17944580 17944614 4 162 1.0 2.0 1.5 1.6 197 chr2L 17944417 intergenic not near genes chr2L 17944516 intergenic not near genes chr2L 17944614 intergenic not near genes chr2L_4_17940001 chr2L_17940001 RAL-859 290 chr2L 17951948 17951980 chr2L 17953415 17953447 hobo 5 1467 1.5 4.0 2.8 1.3 1499 chr2L 17951948 intergenic CR44398 -,CR44397 - chr2L 17952698 intergenic not near genes chr2L 17953447 intergenic not near genes chr2L_5_17950001 chr2L_17950001 RAL-859 291 chr2L 18020740 18020774 chr2L 18020827 18020861 6 87 1.5 2.5 2.0 2.0 121 chr2L 18020740 intron rdo + chr2L 18020800 intron rdo + chr2L 18020861 intron rdo + chr2L_6_18020001 chr2L_18020001 RAL-859 292 chr2L 18026981 18027015 chr2L 18027321 18027354 5 340 1.0 4.5 2.8 1.3 373 chr2L 18026981 5` UTR rdo + chr2L 18027168 intron rdo + chr2L 18027354 intron rdo + chr2L_5_18025001 chr2L_18025001 RAL-859 293 chr2L 18051873 18051907 chr2L 18061020 18061054 roo 5 9147 1.5 1.0 1.2 2.3 9181 chr2L 18051873 intron rdo + chr2L 18056464 intron rdo + chr2L 18061054 intron rdo + chr2L_5_18055001 chr2L_18055001 RAL-859 294 chr2L 18111244 18111259 chr2L 18111335 18111350 4 91 4.0 1.5 2.8 1.1 106 chr2L 18111244 intergenic not near genes chr2L 18111297 intergenic not near genes chr2L 18111350 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-859 295 chr2L 18283116 18283136 chr2L 18283192 18283212 7 75 0.5 2.0 1.2 3.2 96 chr2L 18283116 intergenic not near genes chr2L 18283164 intergenic not near genes chr2L 18283212 intergenic not near genes chr2L_7_18280001 chr2L_18280001 RAL-859 296 chr2L 16217660 16217660 chr2L 18331925 18331928 F-element 6 2114268 11.0 2.5 6.8 0.8 2114268 chr2L 16217660 intergenic not near genes chr2L 17274794 intergenic not near genes chr2L 18331928 intron Fas3 + chr2L_6_17270001 chr2L_17270001 RAL-859 297 chr2L 18408034 18408052 chr2L 18412818 18412836 Doc 5 4784 0.5 4.0 2.2 1.6 4802 chr2L 18408034 intergenic not near genes chr2L 18410435 intergenic not near genes chr2L 18412836 intergenic not near genes chr2L_5_18410001 chr2L_18410001 RAL-859 298 chr2L 16217660 16217660 chr2L 18622718 18622719 10 2405058 11.0 11.0 11.0 0.8 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_10_17420001 chr2L_17420001 RAL-859 299 chr2L 18790284 18790319 chr2L 18791104 18791139 14 820 17.0 20.0 18.5 0.7 855 chr2L 18790284 intron ham - chr2L 18790712 intron ham - chr2L 18791139 intron ham - chr2L_14_18790001 chr2L_18790001 RAL-859 300 chr2L 18812525 18812552 chr2L 18812836 18812862 8 312 0.0 4.0 2.0 2.7 337 chr2L 18812525 intergenic CG17325 +,CG42305 + chr2L 18812694 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812862 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_8_18810001 chr2L_18810001 RAL-859 301 chr2L 18876863 18876884 chr2L 18876941 18876962 8 78 1.0 1.5 1.2 3.6 99 chr2L 18876863 intron tup - chr2L 18876912 intron tup - chr2L 18876962 intron tup - chr2L_8_18875001 chr2L_18875001 RAL-859 302 chr2L 18903095 18903124 chr2L 18903192 18903221 5 96 2.0 3.5 2.8 1.3 126 chr2L 18903095 intergenic not near genes chr2L 18903158 intergenic not near genes chr2L 18903221 intergenic not near genes chr2L_5_18900001 chr2L_18900001 RAL-859 303 chr2L 18990312 18990343 chr2L 18990423 18990453 7 111 5.0 2.0 3.5 1.6 141 chr2L 18990312 intergenic CG15170 - chr2L 18990382 intergenic CG15170 - chr2L 18990453 intergenic CG15170 - chr2L_7_18990001 chr2L_18990001 RAL-859 304 chr2L 19024096 19024097 chr2L 21768291 21768293 9 2744196 15.0 11.5 13.2 0.6 2744197 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768293 intron CG31612 - chr2L_9_20395001 chr2L_20395001 RAL-859 305 chr2L 19142487 19142512 chr2L 19142577 19142602 6 90 1.5 1.0 1.2 2.7 115 chr2L 19142487 intron brat + chr2L 19142544 intron brat + chr2L 19142602 intron brat + chr2L_6_19140001 chr2L_19140001 RAL-859 306 chr2L 19147383 19147402 chr2L 19154418 19154437 297 5 7035 0.0 6.0 3.0 1.2 7054 chr2L 19147383 intron brat + chr2L 19150910 intron brat + chr2L 19154437 intron brat + chr2L_5_19150001 chr2L_19150001 RAL-859 307 chr2L 19189968 19190001 chr2L 19190122 19190154 10 154 2.0 4.0 3.0 2.5 186 chr2L 19189968 intergenic pigeon +,drl + chr2L 19190061 intergenic pigeon +,drl + chr2L 19190154 intergenic drl +,pigeon + chr2L_10_19190001 chr2L_19190001 RAL-859 308 chr2L 19199670 19199706 chr2L 19199747 19199782 9 77 2.0 4.5 3.2 2.1 112 chr2L 19199670 intron drl + chr2L 19199726 intron drl + chr2L 19199782 intron drl + chr2L_9_19195001 chr2L_19195001 RAL-859 309 chr2L 19209614 19209634 chr2L 19209699 19209719 5 85 2.5 2.5 2.5 1.4 105 chr2L 19209614 intergenic not near genes chr2L 19209666 intergenic not near genes chr2L 19209719 intergenic not near genes chr2L_5_19205001 chr2L_19205001 RAL-859 310 chr2L 19241057 19241084 chr2L 19241136 19241162 4 79 1.0 0.5 0.8 2.2 105 chr2L 19241057 intergenic not near genes chr2L 19241110 intergenic not near genes chr2L 19241162 intergenic not near genes chr2L_4_19240001 chr2L_19240001 RAL-859 311 chr2L 19345031 19345040 chr2L 19357240 19357249 blood 7 12209 1.0 1.5 1.2 3.2 12218 chr2L 19345031 intron dnt - chr2L 19351140 intron dnt - chr2L 19357249 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-859 312 chr2L 19357547 19357566 chr2L 19357637 19357656 8 90 2.0 3.5 2.8 2.1 109 chr2L 19357547 intron dnt - chr2L 19357602 intron dnt - chr2L 19357656 intron dnt - chr2L_8_19355001 chr2L_19355001 RAL-859 313 chr2L 19374492 19374516 chr2L 19374600 19374625 5 109 2.5 2.0 2.2 1.6 133 chr2L 19374492 intergenic not near genes chr2L 19374558 intergenic not near genes chr2L 19374625 intergenic not near genes chr2L_5_19370001 chr2L_19370001 RAL-859 314 chr2L 19378344 19378372 chr2L 19378427 19378455 8 83 2.5 5.5 4.0 1.6 111 chr2L 19378344 intergenic not near genes chr2L 19378400 intergenic not near genes chr2L 19378455 intergenic not near genes chr2L_8_19375001 chr2L_19375001 RAL-859 315 chr2L 19384401 19384416 chr2L 19384525 19384541 5 124 4.0 3.5 3.8 1.0 140 chr2L 19384401 exon fon - chr2L 19384471 exon fon - chr2L 19384541 exon fon - chr2L_5_19380001 chr2L_19380001 RAL-859 316 chr2L 19405619 19405629 chr2L 19405709 19405719 6 90 3.0 2.0 2.5 1.7 100 chr2L 19405619 intron Pax - chr2L 19405669 intron Pax - chr2L 19405719 intron Pax - chr2L_6_19405001 chr2L_19405001 RAL-859 317 chr2L 19407716 19407740 chr2L 19407913 19407937 9 197 4.5 3.0 3.8 1.9 221 chr2L 19407716 intron Pax - chr2L 19407826 intron Pax - chr2L 19407937 intron Pax - chr2L_9_19405001 chr2L_19405001 RAL-859 318 chr2L 19597271 19597306 chr2L 19597504 19597539 10 233 4.0 2.0 3.0 2.5 268 chr2L 19597271 intron Lar + chr2L 19597405 intron Lar + chr2L 19597539 intron Lar + chr2L_10_19595001 chr2L_19595001 RAL-859 319 chr2L 19620097 19620131 chr2L 19621085 19621113 jockey 8 988 2.0 5.0 3.5 1.8 1016 chr2L 19620097 intron Lar + chr2L 19620605 intron Lar + chr2L 19621113 intron Lar + chr2L_8_19620001 chr2L_19620001 RAL-859 320 chr2L 19638544 19638572 chr2L 19638631 19638660 10 88 1.5 0.5 1.0 5.0 116 chr2L 19638544 intron Lar + chr2L 19638602 intron Lar + chr2L 19638660 intron Lar + chr2L_10_19635001 chr2L_19635001 RAL-859 321 chr2L 19652570 19652590 chr2L 19674006 19674025 opus 7 21436 4.5 1.0 2.8 1.8 21455 chr2L 19652570 intron Lar + chr2L 19663298 intron Lar + chr2L 19674025 intron Lar + chr2L_7_19660001 chr2L_19660001 RAL-859 322 chr2L 19703541 19703557 chr2L 19712677 19712693 roo 6 9136 5.5 4.0 4.8 1.0 9152 chr2L 19703541 intron Lar + chr2L 19708117 intron Lar + chr2L 19712693 intron Lar + chr2L_6_19705001 chr2L_19705001 RAL-859 323 chr2L 19737354 19737388 chr2L 19740823 19740857 1360 8 3469 2.0 3.0 2.5 2.3 3503 chr2L 19737354 intergenic Nf-YB + chr2L 19739106 intergenic not near genes chr2L 19740857 intergenic not near genes chr2L_8_19735001 chr2L_19735001 RAL-859 324 chr2L 19773162 19773190 chr2L 19773249 19773277 6 87 1.5 0.5 1.0 3.0 115 chr2L 19773162 intergenic not near genes chr2L 19773220 intergenic not near genes chr2L 19773277 intergenic not near genes chr2L_6_19770001 chr2L_19770001 RAL-859 325 chr2L 19837278 19837307 chr2L 19837358 19837383 8 79 1.5 5.5 3.5 1.8 105 chr2L 19837278 intron sick + chr2L 19837330 intron sick + chr2L 19837383 intron sick + chr2L_8_19835001 chr2L_19835001 RAL-859 326 chr2L 19878987 19879015 chr2L 19879196 19879224 14 209 3.0 3.5 3.2 3.3 237 chr2L 19878987 intron sick + chr2L 19879106 intron sick + chr2L 19879224 intron sick + chr2L_14_19875001 chr2L_19875001 RAL-859 327 chr2L 19994652 19994677 chr2L 19994732 19994755 5 80 3.0 2.0 2.5 1.4 103 chr2L 19994652 intron CG43861 - chr2L 19994704 intron CG43861 - chr2L 19994755 intron CG43861 - chr2L_5_19990001 chr2L_19990001 RAL-859 328 chr2L 20005870 20005898 chr2L 20010946 20010974 flea 4 5076 2.5 4.0 3.2 1.0 5104 chr2L 20005870 intron CG43861 - chr2L 20008422 intron CG43861 - chr2L 20010974 intron CG43861 - chr2L_4_20005001 chr2L_20005001 RAL-859 329 chr2L 20057053 20057076 chr2L 20057131 20057154 7 78 1.5 1.0 1.2 3.2 101 chr2L 20057053 intergenic not near genes chr2L 20057104 intergenic not near genes chr2L 20057154 intergenic not near genes chr2L_7_20055001 chr2L_20055001 RAL-859 330 chr2L 20078883 20078913 chr2L 20078960 20078990 12 76 3.5 1.5 2.5 3.4 107 chr2L 20078883 intron neb + chr2L 20078936 intron neb + chr2L 20078990 intron neb + chr2L_12_20075001 chr2L_20075001 RAL-859 331 chr2L 20269620 20269631 chr2L 20269843 20269854 6 223 2.0 4.5 3.2 1.4 234 chr2L 20269620 intergenic not near genes chr2L 20269737 intergenic not near genes chr2L 20269854 intergenic not near genes chr2L_6_20265001 chr2L_20265001 RAL-859 332 chr2L 20272117 20272139 chr2L 20282828 20282850 copia 6 10711 3.0 3.0 3.0 1.5 10733 chr2L 20272117 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282850 intergenic not near genes chr2L_6_20275001 chr2L_20275001 RAL-859 333 chr2L 20300000 20300021 chr2L 20300088 20300109 6 88 3.5 2.5 3.0 1.5 109 chr2L 20300000 intergenic not near genes chr2L 20300054 intergenic not near genes chr2L 20300109 intergenic not near genes chr2L_6_20300001 chr2L_20300001 RAL-859 334 chr2L 20303165 20303194 chr2L 20310633 20310662 blood 6 7468 0.0 1.0 0.5 4.0 7497 chr2L 20303165 intergenic not near genes chr2L 20306914 intergenic not near genes chr2L 20310662 intergenic not near genes chr2L_6_20305001 chr2L_20305001 RAL-859 335 chr2L 20392949 20392979 chr2L 20393041 20393071 6 92 0.5 0.0 0.2 5.0 122 chr2L 20392949 intron CG10947 - chr2L 20393010 intron CG10947 - chr2L 20393071 intron CG10947 - chr2L_6_20390001 chr2L_20390001 RAL-859 336 chr2L 20396807 20396830 chr2L 20396883 20396906 8 76 1.5 0.5 1.0 4.0 99 chr2L 20396807 intron CG10947 - chr2L 20396856 intron CG10947 - chr2L 20396906 intron CG10947 - chr2L_8_20395001 chr2L_20395001 RAL-859 337 chr2L 20400367 20400385 chr2L 20400486 20400504 6 118 3.0 2.0 2.5 1.7 137 chr2L 20400367 intron CG10947 - chr2L 20400436 intron CG10947 - chr2L 20400504 intron CG10947 - chr2L_6_20400001 chr2L_20400001 RAL-859 338 chr2L 20498688 20498707 chr2L 20498787 20498806 5 99 4.0 3.0 3.5 1.1 118 chr2L 20498688 intergenic not near genes chr2L 20498747 intergenic not near genes chr2L 20498806 intergenic not near genes chr2L_5_20495001 chr2L_20495001 RAL-859 339 chr2L 20576221 20576241 chr2L 20583689 20583709 blood 8 7468 5.0 2.5 3.8 1.7 7488 chr2L 20576221 intergenic not near genes chr2L 20579965 intergenic not near genes chr2L 20583709 3` UTR CR44909 - chr2L_8_20575001 chr2L_20575001 RAL-859 340 chr2L 20601789 20601812 chr2L 20601867 20601890 4 78 1.5 1.0 1.2 1.8 101 chr2L 20601789 intron CR44909 - chr2L 20601840 intron CR44909 - chr2L 20601890 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-859 341 chr2L 20602723 20602744 chr2L 20602810 20602832 7 87 0.5 2.5 1.5 2.8 109 chr2L 20602723 intron CR44909 - chr2L 20602778 intron CR44909 - chr2L 20602832 intron CR44909 - chr2L_7_20600001 chr2L_20600001 RAL-859 342 chr2L 20804704 20804731 chr2L 20804789 20804816 6 85 2.0 0.5 1.2 2.7 112 chr2L 20804704 intron CG9328 + chr2L 20804760 intron CG9328 + chr2L 20804816 intron CG9328 + chr2L_6_20800001 chr2L_20800001 RAL-859 343 chr2L 20862583 20862590 chr2L 20862680 20862687 4 97 0.0 3.0 1.5 1.6 104 chr2L 20862583 intergenic not near genes chr2L 20862635 intergenic not near genes chr2L 20862687 intergenic not near genes chr2L_4_20860001 chr2L_20860001 RAL-859 344 chr2L 20891535 20891545 chr2L 20896635 20896646 jockey 6 5101 1.5 1.0 1.2 2.7 5111 chr2L 20891535 intron,intron CG43739 -,sky - chr2L 20894090 intron,intron CG43739 -,sky - chr2L 20896646 intron,intron CG43739 -,sky - chr2L_6_20890001 chr2L_20890001 RAL-859 345 chr2L 20967928 20967960 chr2L 20968021 20968053 8 92 3.0 2.5 2.8 2.1 125 chr2L 20967928 intron CG42238 - chr2L 20967990 intron CG42238 - chr2L 20968053 intron CG42238 - chr2L_8_20965001 chr2L_20965001 RAL-859 346 chr2L 20976652 20976678 chr2L 20981467 20981493 X-element 4 4815 4.0 1.5 2.8 1.1 4841 chr2L 20976652 intron CG42238 - chr2L 20979072 intron CG42238 - chr2L 20981493 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-859 347 chr2L 20984605 20984640 chr2L 20984684 20984721 9 80 2.0 5.0 3.5 2.0 116 chr2L 20984605 intron CG42238 - chr2L 20984663 intron CG42238 - chr2L 20984721 intron CG42238 - chr2L_9_20980001 chr2L_20980001 RAL-859 348 chr2L 21020272 21020309 chr2L 21023949 21023986 NOF 8 3677 2.5 1.5 2.0 2.7 3714 chr2L 21020272 intron CG42238 - chr2L 21022129 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-859 349 chr2L 21041137 21041167 chr2L 21049398 21049428 Tirant 12 8261 1.0 3.5 2.2 3.8 8291 chr2L 21041137 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049428 intron CG42238 - chr2L_12_21045001 chr2L_21045001 RAL-859 350 chr2L 21119284 21119313 chr2L 21119367 21119397 12 84 2.5 1.0 1.8 4.3 113 chr2L 21119284 intron Nhe2 + chr2L 21119340 intron Nhe2 + chr2L 21119397 intron Nhe2 + chr2L_12_21115001 chr2L_21115001 RAL-859 351 chr2L 21284055 21284078 chr2L 21284528 21284551 11 472 3.0 4.5 3.8 2.3 496 chr2L 21284055 intergenic not near genes chr2L 21284303 intergenic not near genes chr2L 21284551 intergenic not near genes chr2L_11_21280001 chr2L_21280001 RAL-859 352 chr2L 21285634 21285669 chr2L 21285732 21285767 12 98 0.5 2.5 1.5 4.8 133 chr2L 21285634 intergenic Mio - chr2L 21285700 intergenic Mio - chr2L 21285767 intergenic Mio - chr2L_12_21285001 chr2L_21285001 RAL-859 353 chr2L 21286603 21286633 chr2L 21286681 21286711 5 78 1.0 1.0 1.0 2.5 108 chr2L 21286603 exon Mio - chr2L 21286657 intron Mio - chr2L 21286711 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-859 354 chr2L 21307472 21307489 chr2L 21307554 21307571 4 82 3.0 1.5 2.2 1.2 99 chr2L 21307472 intron Mio - chr2L 21307522 intron Mio - chr2L 21307571 intron Mio - chr2L_4_21305001 chr2L_21305001 RAL-859 355 chr2L 21347559 21347579 chr2L 21355026 21355051 blood 5 7471 3.0 0.5 1.8 1.8 7492 chr2L 21347559 intron Tsp39D + chr2L 21351305 intron Tsp39D + chr2L 21355051 intron Tsp39D + chr2L_5_21350001 chr2L_21350001 RAL-859 356 chr2L 21381199 21381224 chr2L 21381302 21381327 6 102 1.5 1.5 1.5 2.4 128 chr2L 21381199 intron nrv3 + chr2L 21381263 intron nrv3 + chr2L 21381327 intron nrv3 + chr2L_6_21380001 chr2L_21380001 RAL-859 357 chr2L 21396598 21396622 chr2L 21396833 21396857 4 235 3.5 3.5 3.5 0.9 259 chr2L 21396598 intergenic not near genes chr2L 21396728 intergenic not near genes chr2L 21396857 intergenic not near genes chr2L_4_21395001 chr2L_21395001 RAL-859 358 chr2L 21597033 21597063 chr2L 21604776 21604807 roo 8 7743 1.5 0.5 1.0 4.0 7774 chr2L 21597033 intergenic not near genes chr2L 21600920 intergenic not near genes chr2L 21604807 intergenic not near genes chr2L_8_21600001 chr2L_21600001 RAL-859 359 chr2L 21745263 21745280 chr2L 21745353 21745370 5 90 0.0 2.0 1.0 2.5 107 chr2L 21745263 intron step - chr2L 21745316 intron step - chr2L 21745370 intron step - chr2L_5_21745001 chr2L_21745001 RAL-859 360 chr2L 21771984 21772014 chr2L 21772063 21772093 6 79 1.5 2.0 1.8 2.1 109 chr2L 21771984 intron CG31612 - chr2L 21772038 intron CG31612 - chr2L 21772093 intron CG31612 - chr2L_6_21770001 chr2L_21770001 RAL-859 361 chr2L 21819335 21819357 chr2L 21819421 21819445 8 88 0.0 3.5 1.8 2.9 110 chr2L 21819335 intergenic CR44786 + chr2L 21819390 intergenic CR44786 + chr2L 21819445 intergenic CR44786 + chr2L_8_21815001 chr2L_21815001 RAL-859 362 chr2L 21824133 21824156 chr2L 21824220 21824243 6 86 0.0 1.5 0.8 3.3 110 chr2L 21824133 intergenic not near genes chr2L 21824188 intergenic not near genes chr2L 21824243 intergenic not near genes chr2L_6_21820001 chr2L_21820001 RAL-859 363 chr2L 21901419 21901447 chr2L 21901495 21901525 4 77 0.0 2.5 1.2 1.8 106 chr2L 21901419 intergenic not near genes chr2L 21901472 intergenic not near genes chr2L 21901525 intergenic not near genes chr2L_4_21900001 chr2L_21900001 RAL-859 364 chr2L 21981690 21981716 chr2L 21990854 21990879 roo 6 9164 2.0 5.0 3.5 1.3 9189 chr2L 21981690 exon CG2528 - chr2L 21986284 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_6_21985001 chr2L_21985001 RAL-859 365 chr2L 22054870 22054890 chr2L 22055228 22055248 5 358 0.5 0.0 0.2 4.2 378 chr2L 22054870 intergenic not near genes chr2L 22055059 intergenic not near genes chr2L 22055248 intergenic not near genes chr2L_5_22055001 chr2L_22055001 RAL-859 366 chr2L 22192022 22192051 chr2L 22192111 22192140 7 88 4.0 1.0 2.5 2.0 118 chr2L 22192022 intron Ir40a - chr2L 22192081 intron Ir40a - chr2L 22192140 intron Ir40a - chr2L_7_22190001 chr2L_22190001 RAL-859 367 chr2L 22212141 22212162 chr2L 22212688 22212709 4 547 0.5 3.0 1.8 1.4 568 chr2L 22212141 intron Ir40a - chr2L 22212425 intron Ir40a - chr2L 22212709 intron Ir40a - chr2L_4_22210001 chr2L_22210001 RAL-859 368 chr2L 22215908 22215934 chr2L 22215994 22216020 4 86 5.0 2.0 3.5 0.9 112 chr2L 22215908 intergenic not near genes chr2L 22215964 intergenic not near genes chr2L 22216020 intergenic not near genes chr2L_4_22215001 chr2L_22215001 RAL-859 369 chr2L 22239431 22239461 chr2L 22239512 22239542 12 81 2.5 1.0 1.8 4.3 111 chr2L 22239431 3` UTR CR43765 - chr2L 22239486 3` UTR CR43765 - chr2L 22239542 3` UTR CR43765 - chr2L_12_22235001 chr2L_22235001 RAL-859 370 chr2L 22258611 22258638 chr2L 22260735 22260762 G6 4 2124 4.5 1.5 3.0 1.0 2151 chr2L 22258611 intergenic Tif-IA + chr2L 22259686 intergenic not near genes chr2L 22260762 intergenic not near genes chr2L_4_22255001 chr2L_22255001 RAL-859 371 chr2L 22294359 22294371 chr2L 22294447 22294459 4 88 2.0 2.0 2.0 1.3 100 chr2L 22294359 intergenic not near genes chr2L 22294409 intergenic not near genes chr2L 22294459 intergenic not near genes chr2L_4_22290001 chr2L_22290001 RAL-859 372 chr2L 22357057 22357084 chr2L 22357203 22357230 7 146 1.0 2.0 1.5 2.8 173 chr2L 22357057 intron CG17018 + chr2L 22357144 intron CG17018 + chr2L 22357230 intron CG17018 + chr2L_7_22355001 chr2L_22355001 RAL-859 373 chr2L 22558388 22558418 chr2L 22558698 22558729 7 311 3.0 1.5 2.2 2.2 341 chr2L 22558388 intergenic not near genes chr2L 22558558 intergenic not near genes chr2L 22558729 intergenic not near genes chr2L_7_22555001 chr2L_22555001 RAL-859 374 chr2L 22581979 22582002 chr2L 22583768 22583791 S-element 4 1789 1.5 0.5 1.0 2.0 1812 chr2L 22581979 intron CG17494 + chr2L 22582885 intron CG17494 + chr2L 22583791 intron CG17494 + chr2L_4_22580001 chr2L_22580001 RAL-859 375 chr2L 22716446 22716452 chr2L 22717847 22717850 INE-1 4 1400 4.0 1.0 2.5 1.1 1404 chr2L 22716446 intron CG40006 - chr2L 22717148 intron CG40006 - chr2L 22717850 intron CG40006 - chr2L_4_22715001 chr2L_22715001 RAL-859 376 chr2L 22776423 22776451 chr2L 22778212 22778239 S-element 7 1789 1.0 1.5 1.2 3.2 1816 chr2L 22776423 intergenic not near genes chr2L 22777331 intergenic not near genes chr2L 22778239 intergenic not near genes chr2L_7_22775001 chr2L_22775001 RAL-859 377 chr2L 22985612 22985640 chr2L 22985718 22985747 5 107 2.5 1.0 1.8 1.8 135 chr2L 22985612 intron cta + chr2L 22985680 intron cta + chr2L 22985747 intron cta + chr2L_5_22985001 chr2L_22985001 RAL-859 378 chr2R 529325 529354 chr2R 537950 537979 Max-element 4 8625 1.0 3.5 2.2 1.2 8654 chr2R 529325 intron CG40378 + chr2R 533652 intron CG40378 + chr2R 537979 intron CG40378 + chr2R_4_530001 chr2R_530001 RAL-859 379 chr2R 552760 552786 chr2R 553977 554001 1360 4 1217 2.0 2.5 2.2 1.2 1241 chr2R 552760 intron CG40378 + chr2R 553380 intron CG40378 + chr2R 554001 intron CG40378 + chr2R_4_550001 chr2R_550001 RAL-859 380 chr2R 1149272 1149276 chr2R 1149439 1149443 5 167 1.5 0.0 0.8 2.8 171 chr2R 1149272 intergenic not near genes chr2R 1149358 intergenic not near genes chr2R 1149443 intergenic not near genes chr2R_5_1145001 chr2R_1145001 RAL-859 381 chr2R 1365864 1365892 chr2R 1365976 1366004 14 112 2.5 2.0 2.2 4.4 140 chr2R 1365864 intron l(2)41Ab + chr2R 1365934 intron l(2)41Ab + chr2R 1366004 intron l(2)41Ab + chr2R_14_1365001 chr2R_1365001 RAL-859 382 chr2R 2015134 2015165 chr2R 2015211 2015242 8 77 3.0 1.5 2.2 2.5 108 chr2R 2015134 intron CG17684 - chr2R 2015188 intron CG17684 - chr2R 2015242 intron CG17684 - chr2R_8_2015001 chr2R_2015001 RAL-859 383 chr2R 2498982 2499017 chr2R 2508129 2508164 roo 7 9147 1.0 1.5 1.2 3.2 9182 chr2R 2498982 intron MFS17 - chr2R 2503573 intron MFS17 - chr2R 2508164 intron MFS17 - chr2R_7_2500001 chr2R_2500001 RAL-859 384 chr2R 2508312 2508325 chr2R 2508450 2508463 4 138 2.5 2.5 2.5 1.1 151 chr2R 2508312 intron MFS17 - chr2R 2508388 intron MFS17 - chr2R 2508463 intron MFS17 - chr2R_4_2505001 chr2R_2505001 RAL-859 385 chr2R 2746920 2746950 chr2R 2746998 2747028 5 78 2.5 1.0 1.8 1.8 108 chr2R 2746920 intergenic not near genes chr2R 2746974 intergenic not near genes chr2R 2747028 intergenic not near genes chr2R_5_2745001 chr2R_2745001 RAL-859 386 chr2R 3144093 3144110 chr2R 3393371 3393388 Doc 4 249278 9.0 3.5 6.2 0.6 249295 chr2R 3144093 intron CG42596 + chr2R 3268740 intergenic not near genes chr2R 3393388 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-859 387 chr2R 3291952 3292099 chr2R 3915121 3915260 4 623167 7.0 13.5 10.2 0.4 623308 chr2R 3291952 intergenic not near genes chr2R 3603606 intergenic not near genes chr2R 3915260 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-859 388 chr2R 4312952 4312975 chr2R 4313036 4313059 8 84 2.5 4.5 3.5 1.8 107 chr2R 4312952 intergenic not near genes chr2R 4313006 intergenic not near genes chr2R 4313059 intergenic not near genes chr2R_8_4310001 chr2R_4310001 RAL-859 389 chr2R 4602860 4602874 chr2R 4603215 4603229 6 355 0.5 4.0 2.2 1.9 369 chr2R 4602860 intron p120ctn + chr2R 4603044 intron p120ctn + chr2R 4603229 intron p120ctn + chr2R_6_4600001 chr2R_4600001 RAL-859 390 chr2R 4622976 4622980 chr2R 4624135 4624139 1360 5 1159 1.5 4.0 2.8 1.3 1163 chr2R 4622976 intergenic CR44101 - chr2R 4623558 intergenic not near genes chr2R 4624139 intergenic not near genes chr2R_5_4620001 chr2R_4620001 RAL-859 391 chr2R 4624639 4624674 chr2R 4626544 4626579 Bica 7 1905 2.5 2.0 2.2 2.2 1940 chr2R 4624639 intergenic not near genes chr2R 4625609 intergenic not near genes chr2R 4626579 intergenic not near genes chr2R_7_4625001 chr2R_4625001 RAL-859 392 chr2R 4750345 4750370 chr2R 4751502 4751526 1360 4 1156 3.0 5.0 4.0 0.8 1181 chr2R 4750345 intron conu + chr2R 4750936 intron conu + chr2R 4751526 intron conu + chr2R_4_4750001 chr2R_4750001 RAL-859 393 chr2R 4970244 4970272 chr2R 4970320 4970348 7 76 4.0 2.5 3.2 1.7 104 chr2R 4970244 intron Ir41a + chr2R 4970296 intron Ir41a + chr2R 4970348 intron Ir41a + chr2R_7_4970001 chr2R_4970001 RAL-859 394 chr2R 5009177 5009206 chr2R 5009253 5009283 8 77 1.5 1.5 1.5 3.2 106 chr2R 5009177 intron Ir41a + chr2R 5009230 intron Ir41a + chr2R 5009283 intron Ir41a + chr2R_8_5005001 chr2R_5005001 RAL-859 395 chr2R 5019288 5019310 chr2R 5019374 5019396 4 86 0.0 3.0 1.5 1.6 108 chr2R 5019288 intron Ir41a + chr2R 5019342 intron Ir41a + chr2R 5019396 intron Ir41a + chr2R_4_5015001 chr2R_5015001 RAL-859 396 chr2R 5040749 5040765 chr2R 5041239 5041255 7 490 0.0 0.5 0.2 5.8 506 chr2R 5040749 intergenic not near genes chr2R 5041002 intergenic not near genes chr2R 5041255 intergenic not near genes chr2R_7_5040001 chr2R_5040001 RAL-859 397 chr2R 5075227 5075245 chr2R 5075355 5075372 5 128 5.0 0.0 2.5 1.4 145 chr2R 5075227 intergenic not near genes chr2R 5075300 intergenic not near genes chr2R 5075372 intergenic not near genes chr2R_5_5075001 chr2R_5075001 RAL-859 398 chr2R 5125255 5125276 chr2R 5125573 5125594 4 318 0.5 2.0 1.2 1.8 339 chr2R 5125255 intron gus - chr2R 5125424 intron gus - chr2R 5125594 intron gus - chr2R_4_5125001 chr2R_5125001 RAL-859 399 chr2R 5237352 5237373 chr2R 5237433 5237455 5 82 2.5 0.0 1.2 2.3 103 chr2R 5237352 intron Nipped-A - chr2R 5237404 intron Nipped-A - chr2R 5237455 intron Nipped-A - chr2R_5_5235001 chr2R_5235001 RAL-859 400 chr2R 5266121 5266154 chr2R 5266204 5266237 22 83 24.0 35.5 29.8 0.7 116 chr2R 5266121 intron d4 + chr2R 5266179 intron d4 + chr2R 5266237 intron d4 + chr2R_22_5265001 chr2R_5265001 RAL-859 401 chr2R 5417992 5418024 chr2R 5420624 5420656 Burdock 6 2632 1.0 0.0 0.5 4.0 2664 chr2R 5417992 intron laccase2 + chr2R 5419324 intron laccase2 + chr2R 5420656 intron laccase2 + chr2R_6_5415001 chr2R_5415001 RAL-859 402 chr2R 5472370 5472394 chr2R 5472464 5472488 7 94 2.0 2.5 2.2 2.2 118 chr2R 5472370 intron CG30440 - chr2R 5472429 intron CG30440 - chr2R 5472488 intron CG30440 - chr2R_7_5470001 chr2R_5470001 RAL-859 403 chr2R 5611801 5611832 chr2R 5611905 5611935 13 104 0.5 0.5 0.5 8.7 134 chr2R 5611801 intergenic CG17508 + chr2R 5611868 intergenic CG17508 + chr2R 5611935 intergenic CG17508 + chr2R_13_5610001 chr2R_5610001 RAL-859 404 chr2R 5693497 5693521 chr2R 5693585 5693610 9 89 1.5 0.5 1.0 4.5 113 chr2R 5693497 intergenic not near genes chr2R 5693554 intergenic not near genes chr2R 5693610 intergenic not near genes chr2R_9_5690001 chr2R_5690001 RAL-859 405 chr2R 5710672 5710684 chr2R 5710749 5710761 4 77 2.0 5.0 3.5 0.9 89 chr2R 5710672 intron ap - chr2R 5710716 intron ap - chr2R 5710761 intron ap - chr2R_4_5710001 chr2R_5710001 RAL-859 406 chr2R 5779246 5779280 chr2R 5779469 5779503 11 223 1.5 1.5 1.5 4.4 257 chr2R 5779246 intron ZnT41F - chr2R 5779374 intron ZnT41F - chr2R 5779503 intron ZnT41F - chr2R_11_5775001 chr2R_5775001 RAL-859 407 chr2R 5826804 5826822 chr2R 5827022 5827040 6 218 2.0 6.0 4.0 1.2 236 chr2R 5826804 intron dpr12 + chr2R 5826922 intron dpr12 + chr2R 5827040 intron dpr12 + chr2R_6_5825001 chr2R_5825001 RAL-859 408 chr2R 5840760 5840780 chr2R 5840842 5840863 7 83 1.5 2.0 1.8 2.5 103 chr2R 5840760 intron dpr12 + chr2R 5840812 intron dpr12 + chr2R 5840863 intron dpr12 + chr2R_7_5840001 chr2R_5840001 RAL-859 409 chr2R 5859983 5860012 chr2R 5860095 5860124 6 112 2.5 3.5 3.0 1.5 141 chr2R 5859983 3` UTR dpr12 + chr2R 5860054 3` UTR dpr12 + chr2R 5860124 3` UTR dpr12 + chr2R_6_5860001 chr2R_5860001 RAL-859 410 chr2R 5861287 5861319 chr2R 5861408 5861440 9 121 0.5 1.5 1.0 4.5 153 chr2R 5861287 intergenic dpr12 + chr2R 5861364 intergenic not near genes chr2R 5861440 intergenic not near genes chr2R_9_5860001 chr2R_5860001 RAL-859 411 chr2R 5869275 5869299 chr2R 5874359 5874383 flea 6 5084 2.5 4.0 3.2 1.4 5108 chr2R 5869275 intergenic not near genes chr2R 5871829 intergenic not near genes chr2R 5874383 intergenic not near genes chr2R_6_5870001 chr2R_5870001 RAL-859 412 chr2R 5878939 5878954 chr2R 5879019 5879034 5 79 3.5 2.0 2.8 1.3 95 chr2R 5878939 intergenic CG44438 - chr2R 5878986 intergenic CG44438 - chr2R 5879034 intergenic CG44438 - chr2R_5_5875001 chr2R_5875001 RAL-859 413 chr2R 5902163 5902185 chr2R 5909722 5909744 17.6 4 7558 1.5 5.0 3.2 1.0 7581 chr2R 5902163 intron CG43366 + chr2R 5905954 intron CG43366 + chr2R 5909744 intron CG43366 + chr2R_4_5905001 chr2R_5905001 RAL-859 414 chr2R 5947936 5947964 chr2R 5948087 5948115 8 151 1.5 0.0 0.8 4.4 179 chr2R 5947936 intergenic not near genes chr2R 5948026 intergenic not near genes chr2R 5948115 intergenic not near genes chr2R_8_5945001 chr2R_5945001 RAL-859 415 chr2R 5948922 5948946 chr2R 5949452 5949476 6 530 3.5 4.5 4.0 1.2 554 chr2R 5948922 intergenic not near genes chr2R 5949199 intergenic not near genes chr2R 5949476 intergenic not near genes chr2R_6_5945001 chr2R_5945001 RAL-859 416 chr2R 6033452 6033474 chr2R 6033537 6033558 5 85 1.0 2.0 1.5 2.0 106 chr2R 6033452 intron SCAP - chr2R 6033505 intron SCAP - chr2R 6033558 intron SCAP - chr2R_5_6030001 chr2R_6030001 RAL-859 417 chr2R 6050304 6050318 chr2R 6050397 6050411 5 93 2.5 0.0 1.2 2.3 107 chr2R 6050304 intergenic CG34212 - chr2R 6050358 intergenic CG34212 - chr2R 6050411 intergenic CG34212 - chr2R_5_6050001 chr2R_6050001 RAL-859 418 chr2R 6096721 6096750 chr2R 6101918 6101948 BS 9 5197 3.0 5.0 4.0 1.8 5227 chr2R 6096721 intron EcR - chr2R 6099334 intron EcR - chr2R 6101948 intron EcR - chr2R_9_6095001 chr2R_6095001 RAL-859 419 chr2R 6126942 6126962 chr2R 6127050 6127070 7 108 4.0 3.5 3.8 1.5 128 chr2R 6126942 intron EcR - chr2R 6127006 intron EcR - chr2R 6127070 intron EcR - chr2R_7_6125001 chr2R_6125001 RAL-859 420 chr2R 6168196 6168217 chr2R 6168278 6168299 5 82 2.0 1.0 1.5 2.0 103 chr2R 6168196 intron EcR - chr2R 6168248 intron EcR - chr2R 6168299 intron EcR - chr2R_5_6165001 chr2R_6165001 RAL-859 421 chr2R 6178123 6178141 chr2R 6178249 6178267 5 126 1.0 1.0 1.0 2.5 144 chr2R 6178123 intergenic not near genes chr2R 6178195 intergenic not near genes chr2R 6178267 intergenic not near genes chr2R_5_6175001 chr2R_6175001 RAL-859 422 chr2R 6494526 6494552 chr2R 6499288 6499314 F-element 4 4762 2.0 1.0 1.5 1.6 4788 chr2R 6494526 intergenic not near genes chr2R 6496920 intergenic not near genes chr2R 6499314 intergenic not near genes chr2R_4_6495001 chr2R_6495001 RAL-859 423 chr2R 6699593 6699623 chr2R 6699678 6699708 9 85 2.0 1.0 1.5 3.6 115 chr2R 6699593 intergenic Rab2 + chr2R 6699650 intergenic Rab2 + chr2R 6699708 intergenic Rab2 + chr2R_9_6695001 chr2R_6695001 RAL-859 424 chr2R 6797077 6797109 chr2R 6797170 6797201 12 93 1.5 1.0 1.2 5.5 124 chr2R 6797077 5` UTR Epac - chr2R 6797139 5` UTR Epac - chr2R 6797201 5` UTR Epac - chr2R_12_6795001 chr2R_6795001 RAL-859 425 chr2R 6822403 6822434 chr2R 6822478 6822511 6 76 5.5 2.5 4.0 1.2 108 chr2R 6822403 3` UTR CR44442 - chr2R 6822457 3` UTR CR44442 - chr2R 6822511 3` UTR CR44442 - chr2R_6_6820001 chr2R_6820001 RAL-859 426 chr2R 6831414 6831439 chr2R 6831780 6831807 8 368 4.0 2.5 3.2 1.9 393 chr2R 6831414 intron,exon CG15236 +,CG34215 - chr2R 6831610 intron,exon CG15236 +,CG34215 - chr2R 6831807 intron CG15236 + chr2R_8_6830001 chr2R_6830001 RAL-859 427 chr2R 7035781 7035794 chr2R 7035888 7035899 5 107 1.5 4.0 2.8 1.3 118 chr2R 7035781 intron Tsp42Ei + chr2R 7035840 intron Tsp42Ei + chr2R 7035899 intron Tsp42Ei + chr2R_5_7035001 chr2R_7035001 RAL-859 428 chr2R 7129197 7129228 chr2R 7132867 7132899 13 3671 26.0 26.0 26.0 0.5 3702 chr2R 7129197 exon Cyp9b1 - chr2R 7131048 exon Cyp9b2 - chr2R 7132899 intergenic not near genes chr2R_13_7130001 chr2R_7130001 RAL-859 429 chr2R 7186336 7186350 chr2R 7186505 7186519 4 169 0.5 1.0 0.8 2.2 183 chr2R 7186336 intron pk + chr2R 7186428 intron pk + chr2R 7186519 intron pk + chr2R_4_7185001 chr2R_7185001 RAL-859 430 chr2R 7196571 7196591 chr2R 7201346 7201366 F-element 6 4775 3.0 2.0 2.5 1.7 4795 chr2R 7196571 intron pk + chr2R 7198968 intron pk + chr2R 7201366 intron pk + chr2R_6_7195001 chr2R_7195001 RAL-859 431 chr2R 7235817 7235851 chr2R 7240909 7240943 jockey 11 5091 1.0 1.5 1.2 5.0 5126 chr2R 7235817 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240943 intergenic not near genes chr2R_11_7235001 chr2R_7235001 RAL-859 432 chr2R 7417911 7418168 chr2R 7417997 7418247 14 81 1.0 3.0 2.0 4.7 336 chr2R 7417911 intergenic not near genes chr2R 7418079 intergenic not near genes chr2R 7418247 intergenic not near genes chr2R_14_7415001 chr2R_7415001 RAL-859 433 chr2R 7529058 7529083 chr2R 7529144 7529170 10 86 2.5 2.5 2.5 2.9 112 chr2R 7529058 intron Drat - chr2R 7529114 intron Drat - chr2R 7529170 intron Drat - chr2R_10_7525001 chr2R_7525001 RAL-859 434 chr2R 7608412 7608435 chr2R 7613614 7613638 I-element 7 5203 1.0 2.5 1.8 2.5 5226 chr2R 7608412 intron CG1358 - chr2R 7611025 intron CG1358 - chr2R 7613638 intron CG1358 - chr2R_7_7610001 chr2R_7610001 RAL-859 435 chr2R 7642872 7642889 chr2R 7642952 7642969 5 79 2.5 4.5 3.5 1.1 97 chr2R 7642872 intron CG43340 + chr2R 7642920 intron CG43340 + chr2R 7642969 intron CG43340 + chr2R_5_7640001 chr2R_7640001 RAL-859 436 chr2R 7750796 7750807 chr2R 7750877 7750888 4 80 6.0 4.0 5.0 0.7 92 chr2R 7750796 intron,intron CG30497 -,CG45093 - chr2R 7750842 intron,intron CG30497 -,CG45093 - chr2R 7750888 intron,intron CG30497 -,CG45093 - chr2R_4_7750001 chr2R_7750001 RAL-859 437 chr2R 7815672 7815701 chr2R 7822141 7822170 Burdock 6 6469 3.5 2.5 3.0 1.5 6498 chr2R 7815672 intergenic CG1882 + chr2R 7818921 intergenic not near genes chr2R 7822170 3` UTR cathD - chr2R_6_7815001 chr2R_7815001 RAL-859 438 chr2R 7869188 7869217 chr2R 7873974 7874003 Doc 6 4786 3.0 2.0 2.5 1.7 4815 chr2R 7869188 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874003 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-859 439 chr2R 7999578 7999592 chr2R 7999660 7999675 6 83 0.0 0.0 0.0 6.0 97 chr2R 7999578 intergenic not near genes chr2R 7999626 intergenic not near genes chr2R 7999675 intergenic not near genes chr2R_6_7995001 chr2R_7995001 RAL-859 440 chr2R 8014440 8014455 chr2R 8014525 8014540 5 85 0.5 1.5 1.0 2.5 100 chr2R 8014440 intergenic not near genes chr2R 8014490 intergenic not near genes chr2R 8014540 intergenic not near genes chr2R_5_8010001 chr2R_8010001 RAL-859 441 chr2R 8015647 8015684 chr2R 8017670 8017707 14 2023 1.0 4.0 2.5 4.0 2060 chr2R 8015647 intergenic mir-4981 + chr2R 8016677 intergenic not near genes chr2R 8017707 intergenic not near genes chr2R_14_8015001 chr2R_8015001 RAL-859 442 chr2R 8089253 8089286 chr2R 8089339 8089372 6 86 1.0 2.0 1.5 2.4 119 chr2R 8089253 3` UTR sut2 + chr2R 8089312 intergenic sut2 +,sut3 + chr2R 8089372 intergenic sut2 +,sut3 + chr2R_6_8085001 chr2R_8085001 RAL-859 443 chr2R 8157902 8157911 chr2R 8157989 8157997 4 87 4.5 2.0 3.2 1.0 95 chr2R 8157902 5` UTR CR44068 + chr2R 8157950 5` UTR CR44068 + chr2R 8157997 5` UTR CR44068 + chr2R_4_8155001 chr2R_8155001 RAL-859 444 chr2R 8160937 8160949 chr2R 8161026 8161037 1360 6 89 3.0 7.5 5.2 1.0 100 chr2R 8160937 intron CG8708 - chr2R 8160987 intron CG8708 - chr2R 8161037 intron CG8708 - chr2R_6_8160001 chr2R_8160001 RAL-859 445 chr2R 8185665 8185670 chr2R 8185755 8185760 4 90 0.5 6.5 3.5 0.9 95 chr2R 8185665 intron LRP1 + chr2R 8185712 intron LRP1 + chr2R 8185760 intron LRP1 + chr2R_4_8185001 chr2R_8185001 RAL-859 446 chr2R 8186407 8186439 chr2R 8186715 8186747 9 308 2.0 2.5 2.2 2.8 340 chr2R 8186407 intron LRP1 + chr2R 8186577 intron LRP1 + chr2R 8186747 intron LRP1 + chr2R_9_8185001 chr2R_8185001 RAL-859 447 chr2R 8236038 8236048 chr2R 8236119 8236129 5 81 1.0 1.5 1.2 2.3 91 chr2R 8236038 intergenic not near genes chr2R 8236084 intergenic not near genes chr2R 8236129 intergenic not near genes chr2R_5_8235001 chr2R_8235001 RAL-859 448 chr2R 8330872 8330894 chr2R 8331358 8331380 roo 6 486 2.5 2.5 2.5 1.7 508 chr2R 8330872 intron pdm3 + chr2R 8331126 intron pdm3 + chr2R 8331380 intron pdm3 + chr2R_6_8330001 chr2R_8330001 RAL-859 449 chr2R 8398206 8398239 chr2R 8402986 8403020 Doc 6 4781 4.5 2.5 3.5 1.3 4814 chr2R 8398206 intron CG2121 - chr2R 8400613 intron CG2121 - chr2R 8403020 intron CG2121 - chr2R_6_8400001 chr2R_8400001 RAL-859 450 chr2R 8452035 8452058 chr2R 8452117 8452141 5 83 2.0 1.5 1.8 1.8 106 chr2R 8452035 intergenic Mal-A1 - chr2R 8452088 intergenic Mal-A1 - chr2R 8452141 intergenic Mal-A1 - chr2R_5_8450001 chr2R_8450001 RAL-859 451 chr2R 8536202 8536229 chr2R 8536434 8536458 5 231 0.5 0.5 0.5 3.3 256 chr2R 8536202 intergenic not near genes chr2R 8536330 intergenic not near genes chr2R 8536458 intergenic not near genes chr2R_5_8535001 chr2R_8535001 RAL-859 452 chr2R 8612580 8612596 chr2R 8612657 8612673 5 77 2.5 2.0 2.2 1.6 93 chr2R 8612580 intron CG8642 - chr2R 8612626 intron CG8642 - chr2R 8612673 intron CG8642 - chr2R_5_8610001 chr2R_8610001 RAL-859 453 chr2R 8615774 8615807 chr2R 8615887 8615920 15 113 1.0 4.0 2.5 4.3 146 chr2R 8615774 intron Cirl + chr2R 8615847 intron Cirl + chr2R 8615920 5` UTR Cirl + chr2R_15_8615001 chr2R_8615001 RAL-859 454 chr2R 8635926 8635932 chr2R 8636003 8636010 4 78 0.0 3.5 1.8 1.4 84 chr2R 8635926 intergenic not near genes chr2R 8635968 intergenic not near genes chr2R 8636010 intergenic not near genes chr2R_4_8635001 chr2R_8635001 RAL-859 455 chr2R 8722767 8722783 chr2R 8723008 8723021 pogo 8 240 5.5 5.0 5.2 1.3 254 chr2R 8722767 intron CG14767 - chr2R 8722894 intron CG14767 - chr2R 8723021 intron CG14767 - chr2R_8_8720001 chr2R_8720001 RAL-859 456 chr2R 8777926 8777946 chr2R 8784130 8784150 diver 6 6204 0.5 0.5 0.5 4.0 6224 chr2R 8777926 intergenic not near genes chr2R 8781038 intergenic not near genes chr2R 8784150 intergenic not near genes chr2R_6_8780001 chr2R_8780001 RAL-859 457 chr2R 8816242 8816276 chr2R 8816366 8816400 12 124 1.5 3.5 2.5 3.4 158 chr2R 8816242 intron sns + chr2R 8816321 intron sns + chr2R 8816400 intron sns + chr2R_12_8815001 chr2R_8815001 RAL-859 458 chr2R 8982207 8982214 chr2R 8982286 8982293 5 79 3.0 2.0 2.5 1.4 86 chr2R 8982207 intron CG8213 - chr2R 8982250 intron CG8213 - chr2R 8982293 intron CG8213 - chr2R_5_8980001 chr2R_8980001 RAL-859 459 chr2R 9010907 9010933 chr2R 9011116 9011143 7 210 4.5 2.5 3.5 1.6 236 chr2R 9010907 intron CG8172 - chr2R 9011025 intron CG8172 - chr2R 9011143 intron CG8172 - chr2R_7_9010001 chr2R_9010001 RAL-859 460 chr2R 9110150 9110168 chr2R 9110239 9110257 4 89 0.5 1.5 1.0 2.0 107 chr2R 9110150 intergenic Pmm45A - chr2R 9110204 intergenic Pmm45A - chr2R 9110257 intergenic not near genes chr2R_4_9110001 chr2R_9110001 RAL-859 461 chr2R 9151300 9151333 chr2R 9157770 9157803 Burdock 11 6470 1.0 1.0 1.0 5.5 6503 chr2R 9151300 exon CG30345 + chr2R 9154552 intergenic not near genes chr2R 9157803 intergenic CG8008 - chr2R_11_9150001 chr2R_9150001 RAL-859 462 chr2R 9212693 9212726 chr2R 9213179 9213212 roo 10 485 2.0 2.0 2.0 3.3 519 chr2R 9212693 intergenic CR45309 + chr2R 9212952 intergenic CR45309 + chr2R 9213212 5` UTR CR45309 + chr2R_10_9210001 chr2R_9210001 RAL-859 463 chr2R 9230223 9230240 chr2R 9230303 9230320 9 80 3.5 1.0 2.2 2.8 97 chr2R 9230223 intron hig - chr2R 9230272 intron hig - chr2R 9230320 exon hig - chr2R_9_9230001 chr2R_9230001 RAL-859 464 chr2R 9368135 9368152 chr2R 9368210 9368228 7 75 0.5 0.0 0.2 5.8 93 chr2R 9368135 intron CG13954 - chr2R 9368182 intron CG13954 - chr2R 9368228 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-859 465 chr2R 9408228 9408250 chr2R 9408311 9408333 6 83 0.5 2.0 1.2 2.7 105 chr2R 9408228 intron wun - chr2R 9408280 intron wun - chr2R 9408333 intron wun - chr2R_6_9405001 chr2R_9405001 RAL-859 466 chr2R 9480078 9480106 chr2R 9490609 9490636 roo 7 10531 2.5 2.0 2.2 2.2 10558 chr2R 9480078 intergenic not near genes chr2R 9485357 intergenic not near genes chr2R 9490636 intergenic not near genes chr2R_7_9485001 chr2R_9485001 RAL-859 467 chr2R 9535612 9535641 chr2R 9535755 9535784 7 143 2.0 4.0 3.0 1.8 172 chr2R 9535612 intron brp + chr2R 9535698 intron brp + chr2R 9535784 intron brp + chr2R_7_9535001 chr2R_9535001 RAL-859 468 chr2R 9726618 9726643 chr2R 9734169 9734196 17.6 7 7551 1.5 2.0 1.8 2.5 7578 chr2R 9726618 intron sqa - chr2R 9730407 intron sqa - chr2R 9734196 intron sqa - chr2R_7_9730001 chr2R_9730001 RAL-859 469 chr2R 9777545 9777573 chr2R 9777686 9777715 5 142 2.5 0.0 1.2 2.3 170 chr2R 9777545 intron CG1688 - chr2R 9777630 intron CG1688 - chr2R 9777715 intron CG1688 - chr2R_5_9775001 chr2R_9775001 RAL-859 470 chr2R 9790078 9790108 chr2R 9790153 9790185 9 77 4.0 5.5 4.8 1.6 107 chr2R 9790078 intron,5` UTR CG1688 -,CR44208 + chr2R 9790132 intron,5` UTR CG1688 -,CR44208 + chr2R 9790185 intron,5` UTR CG1688 -,CR44208 + chr2R_9_9790001 chr2R_9790001 RAL-859 471 chr2R 9950311 9950322 chr2R 9950388 9950399 4 77 0.0 4.5 2.2 1.2 88 chr2R 9950311 intron Mef2 - chr2R 9950355 intron Mef2 - chr2R 9950399 intron Mef2 - chr2R_4_9950001 chr2R_9950001 RAL-859 472 chr2R 10005562 10005577 chr2R 10005659 10005674 7 97 5.5 1.0 3.2 1.7 112 chr2R 10005562 intron Pka-R2 - chr2R 10005618 intron Pka-R2 - chr2R 10005674 intron Pka-R2 - chr2R_7_10005001 chr2R_10005001 RAL-859 473 chr2R 10005850 10005883 chr2R 10007014 10007047 1360 10 1164 1.0 3.5 2.2 3.1 1197 chr2R 10005850 intron Pka-R2 - chr2R 10006448 intron Pka-R2 - chr2R 10007047 intron Pka-R2 - chr2R_10_10005001 chr2R_10005001 RAL-859 474 chr2R 10107186 10107212 chr2R 10107273 10107299 6 87 2.5 2.0 2.2 1.9 113 chr2R 10107186 intron 14-3-3zeta + chr2R 10107242 intron 14-3-3zeta + chr2R 10107299 intron 14-3-3zeta + chr2R_6_10105001 chr2R_10105001 RAL-859 475 chr2R 10132202 10132218 chr2R 10132282 10132298 5 80 0.5 3.0 1.8 1.8 96 chr2R 10132202 intron gem + chr2R 10132250 intron gem + chr2R 10132298 intron gem + chr2R_5_10130001 chr2R_10130001 RAL-859 476 chr2R 10176890 10176912 chr2R 10186054 10186079 roo 8 9166 0.5 1.0 0.8 4.4 9189 chr2R 10176890 intron KCNQ - chr2R 10181484 intron KCNQ - chr2R 10186079 intron KCNQ - chr2R_8_10180001 chr2R_10180001 RAL-859 477 chr2R 10387980 10387996 chr2R 10388077 10388092 4 97 0.0 2.5 1.2 1.8 112 chr2R 10387980 intron CG42732 - chr2R 10388036 intron CG42732 - chr2R 10388092 intron CG42732 - chr2R_4_10385001 chr2R_10385001 RAL-859 478 chr2R 10411803 10411834 chr2R 10411885 10411916 7 82 4.0 2.5 3.2 1.7 113 chr2R 10411803 intron CG42732 - chr2R 10411860 intron CG42732 - chr2R 10411916 intron CG42732 - chr2R_7_10410001 chr2R_10410001 RAL-859 479 chr2R 10429022 10429046 chr2R 10429099 10429123 4 77 1.0 0.0 0.5 2.7 101 chr2R 10429022 intergenic not near genes chr2R 10429072 intergenic not near genes chr2R 10429123 intergenic not near genes chr2R_4_10425001 chr2R_10425001 RAL-859 480 chr2R 10454099 10454129 chr2R 10454176 10454206 8 77 3.0 4.5 3.8 1.7 107 chr2R 10454099 intron,intron Galphao +,Cyp49a1 - chr2R 10454152 intron,intron Galphao +,Cyp49a1 - chr2R 10454206 intron,intron Galphao +,Cyp49a1 - chr2R_8_10450001 chr2R_10450001 RAL-859 481 chr2R 10562188 10562219 chr2R 10562276 10562307 7 88 1.5 1.0 1.2 3.2 119 chr2R 10562188 exon psq + chr2R 10562248 intron psq + chr2R 10562307 intron psq + chr2R_7_10560001 chr2R_10560001 RAL-859 482 chr2R 10574630 10574647 chr2R 10574712 10574729 4 82 2.5 4.5 3.5 0.9 99 chr2R 10574630 intron psq + chr2R 10574680 intron psq + chr2R 10574729 intron psq + chr2R_4_10570001 chr2R_10570001 RAL-859 483 chr2R 10622358 10622379 chr2R 10637122 10637144 mdg1 6 14765 0.5 3.0 1.8 2.1 14786 chr2R 10622358 intron CG11883 + chr2R 10629751 intron CG11883 + chr2R 10637144 intron CG11883 + chr2R_6_10625001 chr2R_10625001 RAL-859 484 chr2R 10827339 10827359 chr2R 10827426 10827447 6 88 2.5 4.0 3.2 1.4 108 chr2R 10827339 exon CG12325 + chr2R 10827393 3` UTR CG12325 + chr2R 10827447 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_6_10825001 chr2R_10825001 RAL-859 485 chr2R 10948024 10948057 chr2R 10955575 10955608 17.6 5 7551 1.0 2.0 1.5 2.0 7584 chr2R 10948024 intergenic not near genes chr2R 10951816 intergenic not near genes chr2R 10955608 intergenic not near genes chr2R_5_10950001 chr2R_10950001 RAL-859 486 chr2R 11009820 11009837 chr2R 11018992 11019011 roo 7 9174 1.0 1.5 1.2 3.2 9191 chr2R 11009820 intron luna - chr2R 11014416 intron luna - chr2R 11019011 intron luna - chr2R_7_11010001 chr2R_11010001 RAL-859 487 chr2R 11019876 11019908 chr2R 11024942 11024974 jockey 6 5066 0.5 2.0 1.2 2.7 5098 chr2R 11019876 intron luna - chr2R 11022425 intron luna - chr2R 11024974 intron luna - chr2R_6_11020001 chr2R_11020001 RAL-859 488 chr2R 11032657 11032662 chr2R 11032751 11032756 4 94 2.0 1.0 1.5 1.6 99 chr2R 11032657 intron luna - chr2R 11032706 intron luna - chr2R 11032756 intron luna - chr2R_4_11030001 chr2R_11030001 RAL-859 489 chr2R 11102867 11102892 chr2R 11102949 11102974 5 82 4.0 0.0 2.0 1.7 107 chr2R 11102867 intron luna - chr2R 11102920 intron luna - chr2R 11102974 intron luna - chr2R_5_11100001 chr2R_11100001 RAL-859 490 chr2R 11207816 11207846 chr2R 11208008 11208037 BS 6 192 1.5 1.5 1.5 2.4 221 chr2R 11207816 intron shn + chr2R 11207926 intron shn + chr2R 11208037 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-859 491 chr2R 11415527 11415544 chr2R 11418674 11418693 opus 6 3148 3.0 5.5 4.2 1.2 3166 chr2R 11415527 intron Drip - chr2R 11417110 intron Drip - chr2R 11418693 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-859 492 chr2R 11472649 11472678 chr2R 11473846 11473875 pogo 15 1197 3.5 1.0 2.2 4.7 1226 chr2R 11472649 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_15_11470001 chr2R_11470001 RAL-859 493 chr2R 11636406 11636436 chr2R 11636484 11636514 6 77 3.0 0.5 1.8 2.1 108 chr2R 11636406 intron CG9005 - chr2R 11636460 intron CG9005 - chr2R 11636514 intron CG9005 - chr2R_6_11635001 chr2R_11635001 RAL-859 494 chr2R 11670835 11670865 chr2R 11670932 11670960 13 98 2.5 4.5 3.5 2.9 125 chr2R 11670835 intron,intron Roc2 -,Tret1-1 + chr2R 11670898 intron,intron Roc2 -,Tret1-1 + chr2R 11670960 intron,intron Roc2 -,Tret1-1 + chr2R_13_11670001 chr2R_11670001 RAL-859 495 chr2R 11826885 11826895 chr2R 11826997 11827007 4 112 2.0 0.5 1.2 1.8 122 chr2R 11826885 3` UTR CG13192 + chr2R 11826946 3` UTR CG13192 + chr2R 11827007 3` UTR CG13192 + chr2R_4_11825001 chr2R_11825001 RAL-859 496 chr2R 8518781 8518804 chr2R 12066175 12066198 8 3547394 2.5 6.0 4.2 1.5 3547417 chr2R 8518781 intron mtt - chr2R 10292490 intron CAP + chr2R 12066198 intron CG8888 - chr2R_8_10290001 chr2R_10290001 RAL-859 497 chr2R 12120414 12120433 chr2R 12120496 12120515 6 82 1.5 4.0 2.8 1.6 101 chr2R 12120414 intergenic not near genes chr2R 12120464 intergenic not near genes chr2R 12120515 intergenic not near genes chr2R_6_12120001 chr2R_12120001 RAL-859 498 chr2R 12124837 12124855 chr2R 12124919 12124939 6 84 2.0 1.5 1.8 2.1 102 chr2R 12124837 intergenic not near genes chr2R 12124888 intergenic not near genes chr2R 12124939 intergenic not near genes chr2R_6_12120001 chr2R_12120001 RAL-859 499 chr2R 12186006 12186035 chr2R 12186101 12186129 8 95 2.0 1.0 1.5 3.2 123 chr2R 12186006 intron Cyp6g1 + chr2R 12186068 intron Cyp6g1 + chr2R 12186129 intron Cyp6g1 + chr2R_8_12185001 chr2R_12185001 RAL-859 500 chr2R 12187471 12187507 chr2R 12190087 12190123 52 2617 99.5 68.0 83.8 0.6 2652 chr2R 12187471 exon Cyp6g1 + chr2R 12188797 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_52_12185001 chr2R_12185001 RAL-859 501 chr2R 12217575 12217589 chr2R 12217656 12217670 6 81 3.5 2.5 3.0 1.5 95 chr2R 12217575 intergenic not near genes chr2R 12217622 intergenic not near genes chr2R 12217670 intergenic not near genes chr2R_6_12215001 chr2R_12215001 RAL-859 502 chr2R 12240762 12240770 chr2R 12240838 12240846 5 76 2.0 0.0 1.0 2.5 84 chr2R 12240762 3` UTR CG13170 + chr2R 12240804 3` UTR CG13170 + chr2R 12240846 intergenic CG13170 +,CG43315 + chr2R_5_12240001 chr2R_12240001 RAL-859 503 chr2R 12377501 12377532 chr2R 12377623 12377654 8 122 3.0 2.0 2.5 2.3 153 chr2R 12377501 intergenic Cpr49Aa + chr2R 12377578 intergenic Cpr49Aa + chr2R 12377654 intergenic Cpr49Aa + chr2R_8_12375001 chr2R_12375001 RAL-859 504 chr2R 12460187 12460213 chr2R 12460428 12460454 8 241 0.5 0.0 0.2 6.7 267 chr2R 12460187 intron Lac + chr2R 12460320 intron Lac + chr2R 12460454 intron Lac + chr2R_8_12460001 chr2R_12460001 RAL-859 505 chr2R 12481138 12481167 chr2R 12482939 12482970 roo 6 1802 2.0 0.5 1.2 2.7 1832 chr2R 12481138 exon Dh44-R2 + chr2R 12482054 intron Dh44-R2 + chr2R 12482970 intron Dh44-R2 + chr2R_6_12480001 chr2R_12480001 RAL-859 506 chr2R 12501691 12501723 chr2R 12503853 12503885 Rt1c 6 2162 3.5 2.5 3.0 1.5 2194 chr2R 12501691 intron fdl - chr2R 12502788 intron fdl - chr2R 12503885 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-859 507 chr2R 12510742 12510764 chr2R 12510823 12510845 4 81 1.5 3.0 2.2 1.2 103 chr2R 12510742 intergenic vis - chr2R 12510794 intergenic vis - chr2R 12510845 intergenic vis - chr2R_4_12510001 chr2R_12510001 RAL-859 508 chr2R 12535840 12535863 chr2R 12535921 12535944 5 81 4.0 1.0 2.5 1.4 104 chr2R 12535840 intron fra + chr2R 12535892 intron fra + chr2R 12535944 intron fra + chr2R_5_12535001 chr2R_12535001 RAL-859 509 chr2R 12539589 12539603 chr2R 12539939 12539954 6 351 0.5 0.5 0.5 4.0 365 chr2R 12539589 intron fra + chr2R 12539772 intron fra + chr2R 12539954 intron fra + chr2R_6_12535001 chr2R_12535001 RAL-859 510 chr2R 12707517 12707546 chr2R 12715883 12715912 roo 8 8366 0.0 3.0 1.5 3.2 8395 chr2R 12707517 intron CG42663 + chr2R 12711714 intron CG42663 + chr2R 12715912 intron CG42663 + chr2R_8_12710001 chr2R_12710001 RAL-859 511 chr2R 12773917 12773954 chr2R 12774000 12774037 9 83 1.5 1.5 1.5 3.6 120 chr2R 12773917 intergenic not near genes chr2R 12773977 intergenic not near genes chr2R 12774037 intergenic not near genes chr2R_9_12770001 chr2R_12770001 RAL-859 512 chr2R 12789295 12789322 chr2R 12797657 12797685 roo 9 8362 0.5 3.0 1.8 3.2 8390 chr2R 12789295 intron,3` UTR sca +,CR45137 - chr2R 12793490 intron,intron sca +,CR45137 - chr2R 12797685 intron,3` UTR sca +,CR45137 - chr2R_9_12790001 chr2R_12790001 RAL-859 513 chr2R 12819451 12819475 chr2R 12824520 12824543 jockey 5 5069 2.5 1.5 2.0 1.7 5092 chr2R 12819451 intergenic not near genes chr2R 12821997 intergenic not near genes chr2R 12824543 intergenic not near genes chr2R_5_12820001 chr2R_12820001 RAL-859 514 chr2R 12897470 12897484 chr2R 12897561 12897575 4 91 0.5 2.0 1.2 1.8 105 chr2R 12897470 intron vg + chr2R 12897522 intron vg + chr2R 12897575 intron vg + chr2R_4_12895001 chr2R_12895001 RAL-859 515 chr2R 12993315 12993349 chr2R 12993400 12993434 4 85 2.0 0.0 1.0 2.0 119 chr2R 12993315 intergenic not near genes chr2R 12993374 intergenic not near genes chr2R 12993434 intergenic CG33798 + chr2R_4_12990001 chr2R_12990001 RAL-859 516 chr2R 13078759 13078788 chr2R 13078855 13078885 7 97 2.0 1.0 1.5 2.8 126 chr2R 13078759 intron Drl-2 - chr2R 13078822 intron Drl-2 - chr2R 13078885 intron Drl-2 - chr2R_7_13075001 chr2R_13075001 RAL-859 517 chr2R 13136848 13136870 chr2R 13141646 13141668 Doc 13 4798 3.5 5.0 4.2 2.5 4820 chr2R 13136848 exon Cap-G + chr2R 13139258 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_13_13135001 chr2R_13135001 RAL-859 518 chr2R 13167434 13167460 chr2R 13167528 13167554 6 94 0.5 0.0 0.2 5.0 120 chr2R 13167434 intron GLaz - chr2R 13167494 intron GLaz - chr2R 13167554 intron GLaz - chr2R_6_13165001 chr2R_13165001 RAL-859 519 chr2R 13403924 13403936 chr2R 13404009 13404021 4 85 2.0 3.0 2.5 1.1 97 chr2R 13403924 intergenic not near genes chr2R 13403972 intergenic not near genes chr2R 13404021 intergenic not near genes chr2R_4_13400001 chr2R_13400001 RAL-859 520 chr2R 13431488 13431519 chr2R 13431567 13431598 5 79 1.5 2.0 1.8 1.8 110 chr2R 13431488 intron CG42321 - chr2R 13431543 intron CG42321 - chr2R 13431598 intron CG42321 - chr2R_5_13430001 chr2R_13430001 RAL-859 521 chr2R 13438861 13438892 chr2R 13440179 13440210 11 1318 6.5 27.0 16.8 0.6 1349 chr2R 13438861 5` UTR CG42321 - chr2R 13439536 3` UTR cnn - chr2R 13440210 exon cnn - chr2R_11_13435001 chr2R_13435001 RAL-859 522 chr2R 13580505 13580532 chr2R 13580855 13580882 jockey 8 349 0.5 5.5 3.0 2.0 377 chr2R 13580505 3` UTR CG6191 - chr2R 13580694 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580882 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_8_13580001 chr2R_13580001 RAL-859 523 chr2R 13790329 13790332 chr2R 13790405 13790408 4 76 4.0 0.0 2.0 1.3 79 chr2R 13790329 intergenic not near genes chr2R 13790368 intergenic not near genes chr2R 13790408 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-859 524 chr2R 13793152 13793159 chr2R 13793227 13793235 4 75 5.5 2.0 3.8 0.8 83 chr2R 13793152 intergenic not near genes chr2R 13793194 intergenic not near genes chr2R 13793235 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-859 525 chr2R 13888764 13888789 chr2R 13888841 13888866 8 77 1.0 0.0 0.5 5.3 102 chr2R 13888764 intron shot - chr2R 13888815 intron shot - chr2R 13888866 intron shot - chr2R_8_13885001 chr2R_13885001 RAL-859 526 chr2R 13905603 13905624 chr2R 13907585 13907604 Rt1a 9 1982 5.0 2.0 3.5 2.0 2001 chr2R 13905603 intron shot - chr2R 13906604 intron shot - chr2R 13907604 intron shot - chr2R_9_13905001 chr2R_13905001 RAL-859 527 chr2R 13925875 13925893 chr2R 13926028 13926047 7 154 4.0 4.0 4.0 1.4 172 chr2R 13925875 intron shot - chr2R 13925961 intron shot - chr2R 13926047 intron shot - chr2R_7_13925001 chr2R_13925001 RAL-859 528 chr2R 14000230 14000258 chr2R 14000458 14000486 5 228 2.5 1.5 2.0 1.7 256 chr2R 14000230 intron mam + chr2R 14000358 intron mam + chr2R 14000486 intron mam + chr2R_5_14000001 chr2R_14000001 RAL-859 529 chr2R 14036512 14036528 chr2R 14036734 14036750 5 222 2.5 1.5 2.0 1.7 238 chr2R 14036512 intron mam + chr2R 14036631 intron mam + chr2R 14036750 intron mam + chr2R_5_14035001 chr2R_14035001 RAL-859 530 chr2R 14142447 14142468 chr2R 14142537 14142558 4 90 1.0 1.0 1.0 2.0 111 chr2R 14142447 intergenic not near genes chr2R 14142502 intergenic not near genes chr2R 14142558 intergenic not near genes chr2R_4_14140001 chr2R_14140001 RAL-859 531 chr2R 14400524 14400550 chr2R 14400603 14400629 8 79 1.5 2.5 2.0 2.7 105 chr2R 14400524 intergenic not near genes chr2R 14400576 intergenic not near genes chr2R 14400629 intergenic not near genes chr2R_8_14400001 chr2R_14400001 RAL-859 532 chr2R 14467308 14467327 chr2R 14476465 14476484 roo 6 9158 0.5 1.5 1.0 3.0 9176 chr2R 14467308 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476484 5` UTR CR44462 + chr2R_6_14470001 chr2R_14470001 RAL-859 533 chr2R 14489221 14489250 chr2R 14489315 14489342 5 94 3.0 1.0 2.0 1.7 121 chr2R 14489221 intron L + chr2R 14489282 intron L + chr2R 14489342 intron L + chr2R_5_14485001 chr2R_14485001 RAL-859 534 chr2R 14497386 14497418 chr2R 14498552 14498584 1360 4 1165 0.5 3.0 1.8 1.4 1198 chr2R 14497386 3` UTR Cpsf160 - chr2R 14497985 intron Cpsf160 - chr2R 14498584 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-859 535 chr2R 14507674 14507686 chr2R 14507760 14507771 5 85 1.5 3.0 2.2 1.6 97 chr2R 14507674 exon Asx + chr2R 14507722 exon Asx + chr2R 14507771 exon Asx + chr2R_5_14505001 chr2R_14505001 RAL-859 536 chr2R 14565561 14565577 chr2R 14565638 14565654 10 77 4.5 0.0 2.2 3.1 93 chr2R 14565561 intron ttv + chr2R 14565608 intron ttv + chr2R 14565654 intron ttv + chr2R_10_14565001 chr2R_14565001 RAL-859 537 chr2R 14729979 14729989 chr2R 14730063 14730073 4 84 1.5 3.5 2.5 1.1 94 chr2R 14729979 intergenic not near genes chr2R 14730026 intergenic not near genes chr2R 14730073 intergenic not near genes chr2R_4_14730001 chr2R_14730001 RAL-859 538 chr2R 14733394 14733624 chr2R 14733481 14733703 9 86 0.5 0.5 0.5 6.0 309 chr2R 14733394 intergenic not near genes chr2R 14733548 intergenic not near genes chr2R 14733703 intergenic not near genes chr2R_9_14730001 chr2R_14730001 RAL-859 539 chr2R 14748298 14748307 chr2R 14748378 14748387 4 80 1.5 2.0 1.8 1.4 89 chr2R 14748298 intergenic AttA + chr2R 14748342 intergenic AttA + chr2R 14748387 intergenic AttA + chr2R_4_14745001 chr2R_14745001 RAL-859 540 chr2R 14889208 14889227 chr2R 14897816 14897835 Max-element 6 8608 3.0 0.0 1.5 2.4 8627 chr2R 14889208 intergenic Cyp6a8 - chr2R 14893522 intergenic not near genes chr2R 14897835 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-859 541 chr2R 14911701 14911725 chr2R 14911824 14911848 4 123 2.0 3.0 2.5 1.1 147 chr2R 14911701 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911848 intron CG10249 - chr2R_4_14910001 chr2R_14910001 RAL-859 542 chr2R 14922143 14922167 chr2R 14922219 14922243 11 76 3.0 0.0 1.5 4.4 100 chr2R 14922143 intron CG10249 - chr2R 14922193 intron CG10249 - chr2R 14922243 intron CG10249 - chr2R_11_14920001 chr2R_14920001 RAL-859 543 chr2R 14934455 14934467 chr2R 14934543 14934555 5 88 3.5 0.0 1.8 1.8 100 chr2R 14934455 intron CG10253 - chr2R 14934505 intron CG10253 - chr2R 14934555 intron CG10253 - chr2R_5_14930001 chr2R_14930001 RAL-859 544 chr2R 14997355 14997384 chr2R 14997844 14997873 8 489 2.0 0.0 1.0 4.0 518 chr2R 14997355 intergenic not near genes chr2R 14997614 intergenic not near genes chr2R 14997873 intergenic not near genes chr2R_8_14995001 chr2R_14995001 RAL-859 545 chr2R 15004725 15004759 chr2R 15005054 15005088 jockey 13 329 4.0 1.0 2.5 3.7 363 chr2R 15004725 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005088 intergenic not near genes chr2R_13_15000001 chr2R_15000001 RAL-859 546 chr2R 15015465 15015485 chr2R 15022889 15022909 mdg1 4 7424 1.5 3.0 2.2 1.2 7444 chr2R 15015465 intron hbs + chr2R 15019187 intron hbs + chr2R 15022909 intron hbs + chr2R_4_15015001 chr2R_15015001 RAL-859 547 chr2R 15084977 15085009 chr2R 15092026 15092058 297 7 7049 4.0 4.0 4.0 1.4 7081 chr2R 15084977 intergenic not near genes chr2R 15088518 intergenic not near genes chr2R 15092058 5` UTR CR44457 + chr2R_7_15085001 chr2R_15085001 RAL-859 548 chr2R 15119318 15119351 chr2R 15127799 15127832 Tirant 5 8481 2.5 2.0 2.2 1.6 8514 chr2R 15119318 intron chn + chr2R 15123575 intron chn + chr2R 15127832 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-859 549 chr2R 15133484 15133505 chr2R 15133562 15133584 9 79 3.5 1.5 2.5 2.6 100 chr2R 15133484 intron chn + chr2R 15133534 intron chn + chr2R 15133584 intron chn + chr2R_9_15130001 chr2R_15130001 RAL-859 550 chr2R 15137967 15138003 chr2R 15138047 15138083 7 81 0.0 0.0 0.0 7.0 116 chr2R 15137967 intron chn + chr2R 15138025 intron chn + chr2R 15138083 intron chn + chr2R_7_15135001 chr2R_15135001 RAL-859 551 chr2R 15196096 15196125 chr2R 15196192 15196221 9 96 5.0 2.5 3.8 1.9 125 chr2R 15196096 intergenic not near genes chr2R 15196158 intergenic not near genes chr2R 15196221 intergenic not near genes chr2R_9_15195001 chr2R_15195001 RAL-859 552 chr2R 15230385 15230391 chr2R 15231096 15231102 4 711 8.5 1.0 4.8 0.7 717 chr2R 15230385 intron,5` UTR Fs -,CR44370 + chr2R 15230744 intron,5` UTR Fs -,CR44370 + chr2R 15231102 intron,5` UTR Fs -,CR44370 + chr2R_4_15230001 chr2R_15230001 RAL-859 553 chr2R 15293830 15293858 chr2R 15293906 15293933 8 76 2.0 1.0 1.5 3.2 103 chr2R 15293830 intron Trpm - chr2R 15293882 intron Trpm - chr2R 15293933 intron Trpm - chr2R_8_15290001 chr2R_15290001 RAL-859 554 chr2R 15296161 15296172 chr2R 15296243 15296255 4 82 2.5 2.5 2.5 1.1 94 chr2R 15296161 intron Trpm - chr2R 15296208 intron Trpm - chr2R 15296255 intron Trpm - chr2R_4_15295001 chr2R_15295001 RAL-859 555 chr2R 15645678 15645699 chr2R 15645773 15645795 8 96 3.0 0.0 1.5 3.2 117 chr2R 15645678 intron CG42524 + chr2R 15645736 intron CG42524 + chr2R 15645795 intron CG42524 + chr2R_8_15645001 chr2R_15645001 RAL-859 556 chr2R 15697896 15697922 chr2R 15697977 15698003 4 81 0.5 0.0 0.2 3.3 107 chr2R 15697896 exon CG33462 + chr2R 15697950 3` UTR CG33462 + chr2R 15698003 3` UTR CG33462 + chr2R_4_15695001 chr2R_15695001 RAL-859 557 chr2R 15740482 15740516 chr2R 15740560 15740594 9 78 1.5 4.5 3.0 2.2 112 chr2R 15740482 intron CG30089 + chr2R 15740538 intron CG30089 + chr2R 15740594 intron CG30089 + chr2R_9_15740001 chr2R_15740001 RAL-859 558 chr2R 16054951 16054959 chr2R 16055034 16055042 6 83 6.5 4.5 5.5 0.9 91 chr2R 16054951 intron CG8405 + chr2R 16054996 intron CG8405 + chr2R 16055042 intron CG8405 + chr2R_6_16050001 chr2R_16050001 RAL-859 559 chr2R 16225857 16225883 chr2R 16225944 16225969 4 87 0.5 1.5 1.0 2.0 112 chr2R 16225857 intron CG15706 - chr2R 16225913 intron CG15706 - chr2R 16225969 intron CG15706 - chr2R_4_16225001 chr2R_16225001 RAL-859 560 chr2R 16245415 16245430 chr2R 16245509 16245523 5 93 0.0 0.5 0.2 4.2 108 chr2R 16245415 intron CngA - chr2R 16245469 intron CngA - chr2R 16245523 intron CngA - chr2R_5_16245001 chr2R_16245001 RAL-859 561 chr2R 16503875 16503903 chr2R 16503965 16503993 6 90 0.5 2.5 1.5 2.4 118 chr2R 16503875 intron Sema-2a + chr2R 16503934 intron Sema-2a + chr2R 16503993 intron Sema-2a + chr2R_6_16500001 chr2R_16500001 RAL-859 562 chr2R 16518051 16518067 chr2R 16518127 16518143 4 76 2.0 1.0 1.5 1.6 92 chr2R 16518051 intron Sema-2a + chr2R 16518097 intron Sema-2a + chr2R 16518143 intron Sema-2a + chr2R_4_16515001 chr2R_16515001 RAL-859 563 chr2R 16547018 16547034 chr2R 16547098 16547113 10 80 0.0 0.0 0.0 10.0 95 chr2R 16547018 intergenic not near genes chr2R 16547066 intergenic not near genes chr2R 16547113 intergenic not near genes chr2R_10_16545001 chr2R_16545001 RAL-859 564 chr2R 16552054 16552078 chr2R 16552141 16552167 8 88 2.0 3.0 2.5 2.3 113 chr2R 16552054 intergenic Syn2 + chr2R 16552110 intergenic Syn2 + chr2R 16552167 intergenic Syn2 + chr2R_8_16550001 chr2R_16550001 RAL-859 565 chr2R 16571878 16571903 chr2R 16571973 16571998 4 95 0.5 3.0 1.8 1.4 120 chr2R 16571878 intergenic CG4927 + chr2R 16571938 intergenic CG4927 + chr2R 16571998 intergenic CG4927 + chr2R_4_16570001 chr2R_16570001 RAL-859 566 chr2R 16617056 16617079 chr2R 16617136 16617158 4 79 1.0 1.0 1.0 2.0 102 chr2R 16617056 intron CG5065 + chr2R 16617107 intron CG5065 + chr2R 16617158 intron CG5065 + chr2R_4_16615001 chr2R_16615001 RAL-859 567 chr2R 16737141 16737165 chr2R 16737241 16737265 9 100 2.5 1.5 2.0 3.0 124 chr2R 16737141 3` UTR CG43104 - chr2R 16737203 3` UTR CG43104 - chr2R 16737265 exon CG43104 - chr2R_9_16735001 chr2R_16735001 RAL-859 568 chr2R 16775659 16775674 chr2R 16775926 16775941 7 267 1.5 3.5 2.5 2.0 282 chr2R 16775659 3` UTR Arp53D + chr2R 16775800 intergenic Arp53D + chr2R 16775941 intergenic Arp53D + chr2R_7_16775001 chr2R_16775001 RAL-859 569 chr2R 16869972 16870002 chr2R 16870051 16870081 5 79 3.5 0.0 1.8 1.8 109 chr2R 16869972 intron CG6426 + chr2R 16870026 intron CG6426 + chr2R 16870081 intron CG6426 + chr2R_5_16870001 chr2R_16870001 RAL-859 570 chr2R 16910230 16910235 chr2R 16910329 16910334 4 99 4.0 2.5 3.2 1.0 104 chr2R 16910230 intergenic not near genes chr2R 16910282 intergenic not near genes chr2R 16910334 intergenic not near genes chr2R_4_16910001 chr2R_16910001 RAL-859 571 chr2R 17236508 17236538 chr2R 17241712 17241742 copia 9 5204 1.5 4.0 2.8 2.4 5234 chr2R 17236508 intron mbl + chr2R 17239125 intron mbl + chr2R 17241742 intron mbl + chr2R_9_17235001 chr2R_17235001 RAL-859 572 chr2R 17393793 17393824 chr2R 17393891 17393922 12 98 1.5 0.5 1.0 6.0 129 chr2R 17393793 intergenic not near genes chr2R 17393858 intergenic not near genes chr2R 17393922 intergenic not near genes chr2R_12_17390001 chr2R_17390001 RAL-859 573 chr2R 17395304 17395314 chr2R 17395382 17395392 4 78 2.0 4.0 3.0 1.0 88 chr2R 17395304 intron Sip1 + chr2R 17395348 intron Sip1 + chr2R 17395392 intron Sip1 + chr2R_4_17395001 chr2R_17395001 RAL-859 574 chr2R 17459006 17459038 chr2R 17459091 17459123 7 85 2.5 2.5 2.5 2.0 117 chr2R 17459006 intron CG14478 + chr2R 17459064 intron CG14478 + chr2R 17459123 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-859 575 chr2R 17461302 17461318 chr2R 17461459 17461476 6 158 1.0 2.5 1.8 2.1 174 chr2R 17461302 intron CG14478 + chr2R 17461389 intron CG14478 + chr2R 17461476 intron CG14478 + chr2R_6_17460001 chr2R_17460001 RAL-859 576 chr2R 17500674 17500689 chr2R 17500749 17500765 5 76 0.0 2.0 1.0 2.5 91 chr2R 17500674 intergenic not near genes chr2R 17500720 intergenic not near genes chr2R 17500765 intergenic not near genes chr2R_5_17500001 chr2R_17500001 RAL-859 577 chr2R 17612591 17612623 chr2R 17612671 17612704 13 81 1.0 4.5 2.8 3.4 113 chr2R 17612591 intron CG10936 - chr2R 17612648 intron CG10936 - chr2R 17612704 intron CG10936 - chr2R_13_17610001 chr2R_17610001 RAL-859 578 chr2R 17637842 17637856 chr2R 17637922 17637936 4 80 0.5 2.0 1.2 1.8 94 chr2R 17637842 intron CG10936 - chr2R 17637889 intron CG10936 - chr2R 17637936 intron CG10936 - chr2R_4_17635001 chr2R_17635001 RAL-859 579 chr2R 17784026 17784057 chr2R 17784266 17784298 pogo 6 240 4.0 5.5 4.8 1.0 272 chr2R 17784026 intergenic mir-31a - chr2R 17784162 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-859 580 chr2R 17852922 17852959 chr2R 17853013 17853050 10 91 0.5 1.5 1.0 5.0 128 chr2R 17852922 intron olf186-F + chr2R 17852986 intron olf186-F + chr2R 17853050 intron olf186-F + chr2R_10_17850001 chr2R_17850001 RAL-859 581 chr2R 17918167 17918196 chr2R 17918244 17918270 5 76 3.5 2.5 3.0 1.2 103 chr2R 17918167 intron Elk + chr2R 17918218 intron Elk + chr2R 17918270 intron Elk + chr2R_5_17915001 chr2R_17915001 RAL-859 582 chr2R 17966163 17966175 chr2R 17966239 17966253 5 78 1.5 4.0 2.8 1.3 90 chr2R 17966163 intergenic not near genes chr2R 17966208 intergenic not near genes chr2R 17966253 intergenic not near genes chr2R_5_17965001 chr2R_17965001 RAL-859 583 chr2R 17981674 17981697 chr2R 17981763 17981785 4 89 1.0 1.5 1.2 1.8 111 chr2R 17981674 intron dpr13 - chr2R 17981730 intron dpr13 - chr2R 17981785 intron dpr13 - chr2R_4_17980001 chr2R_17980001 RAL-859 584 chr2R 17982924 17982948 chr2R 17983009 17983033 6 85 2.0 3.5 2.8 1.6 109 chr2R 17982924 intron dpr13 - chr2R 17982978 intron dpr13 - chr2R 17983033 intron dpr13 - chr2R_6_17980001 chr2R_17980001 RAL-859 585 chr2R 18033635 18033661 chr2R 18033765 18033792 5 131 3.5 1.5 2.5 1.4 157 chr2R 18033635 intergenic not near genes chr2R 18033714 intergenic not near genes chr2R 18033792 intergenic not near genes chr2R_5_18030001 chr2R_18030001 RAL-859 586 chr2R 18045675 18045691 chr2R 18046027 18046043 jockey 4 352 3.0 1.5 2.2 1.2 368 chr2R 18045675 intergenic not near genes chr2R 18045859 intergenic not near genes chr2R 18046043 intergenic CG5767 - chr2R_4_18045001 chr2R_18045001 RAL-859 587 chr2R 18075975 18076001 chr2R 18076068 18076095 9 94 1.5 2.0 1.8 3.2 120 chr2R 18075975 intron CG34386 + chr2R 18076035 intron CG34386 + chr2R 18076095 intron CG34386 + chr2R_9_18075001 chr2R_18075001 RAL-859 588 chr2R 18224595 18224623 chr2R 18224675 18224704 5 81 3.5 3.0 3.2 1.2 109 chr2R 18224595 intergenic not near genes chr2R 18224650 intergenic not near genes chr2R 18224704 intergenic not near genes chr2R_5_18220001 chr2R_18220001 RAL-859 589 chr2R 18226676 18226703 chr2R 18227094 18227125 5 422 0.5 1.0 0.8 2.8 449 chr2R 18226676 intergenic CR45310 + chr2R 18226900 5` UTR CR45310 + chr2R 18227125 5` UTR CR45310 + chr2R_5_18225001 chr2R_18225001 RAL-859 590 chr2R 18308282 18308316 chr2R 18308388 18308422 5 106 2.5 2.5 2.5 1.4 140 chr2R 18308282 intron sbb - chr2R 18308352 intron sbb - chr2R 18308422 intron sbb - chr2R_5_18305001 chr2R_18305001 RAL-859 591 chr2R 18358389 18358420 chr2R 18372600 18372632 roo 7 14212 0.5 0.0 0.2 5.8 14243 chr2R 18358389 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372632 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-859 592 chr2R 18405756 18405775 chr2R 18405837 18405852 4 80 2.0 4.0 3.0 1.0 96 chr2R 18405756 intergenic GstE6 +,GstE5 + chr2R 18405804 intergenic GstE6 +,GstE5 + chr2R 18405852 intergenic GstE6 + chr2R_4_18405001 chr2R_18405001 RAL-859 593 chr2R 18408285 18408311 chr2R 18408406 18408432 10 121 4.0 3.5 3.8 2.1 147 chr2R 18408285 exon GstE8 + chr2R 18408358 exon GstE8 + chr2R 18408432 exon GstE8 + chr2R_10_18405001 chr2R_18405001 RAL-859 594 chr2R 18438864 18438894 chr2R 18438950 18438980 12 86 2.0 1.5 1.8 4.3 116 chr2R 18438864 intron CG30118 - chr2R 18438922 intron CG30118 - chr2R 18438980 intron CG30118 - chr2R_12_18435001 chr2R_18435001 RAL-859 595 chr2R 18479051 18479086 chr2R 18479130 18479165 8 79 1.5 2.5 2.0 2.7 114 chr2R 18479051 intron CG30116 - chr2R 18479108 intron CG30116 - chr2R 18479165 intron CG30116 - chr2R_8_18475001 chr2R_18475001 RAL-859 596 chr2R 18487846 18487853 chr2R 18495315 18495323 blood 4 7470 0.0 3.5 1.8 1.4 7477 chr2R 18487846 intron CG30116 - chr2R 18491584 intron CG30116 - chr2R 18495323 intron CG30116 - chr2R_4_18490001 chr2R_18490001 RAL-859 597 chr2R 18575795 18575830 chr2R 18581983 18582018 3S18 8 6188 4.5 2.5 3.5 1.8 6223 chr2R 18575795 intron GEFmeso - chr2R 18578906 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_8_18575001 chr2R_18575001 RAL-859 598 chr2R 18590867 18590901 chr2R 18600019 18600053 roo 5 9152 1.5 4.0 2.8 1.3 9186 chr2R 18590867 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600053 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-859 599 chr2R 18646413 18646432 chr2R 18646558 18646577 4 145 2.0 2.5 2.2 1.2 164 chr2R 18646413 intron SP2637 - chr2R 18646495 intron SP2637 - chr2R 18646577 intron SP2637 - chr2R_4_18645001 chr2R_18645001 RAL-859 600 chr2R 18713236 18713268 chr2R 18713313 18713345 9 77 2.0 1.0 1.5 3.6 109 chr2R 18713236 intergenic not near genes chr2R 18713290 intergenic not near genes chr2R 18713345 intergenic not near genes chr2R_9_18710001 chr2R_18710001 RAL-859 601 chr2R 18815260 18815291 chr2R 18815396 18815427 7 136 1.0 2.5 1.8 2.5 167 chr2R 18815260 5` UTR,5` UTR CG15096 -,CR43418 + chr2R 18815344 5` UTR,5` UTR CG15096 -,CR43418 + chr2R 18815427 5` UTR,5` UTR CG15096 -,CR43418 + chr2R_7_18815001 chr2R_18815001 RAL-859 602 chr2R 19012938 19012962 chr2R 19013032 19013054 11 94 3.5 4.0 3.8 2.3 116 chr2R 19012938 intergenic not near genes chr2R 19012996 intergenic not near genes chr2R 19013054 intergenic not near genes chr2R_11_19010001 chr2R_19010001 RAL-859 603 chr2R 19168744 19168753 chr2R 19168825 19168834 5 81 4.0 1.0 2.5 1.4 90 chr2R 19168744 intron CG10737 + chr2R 19168789 intron CG10737 + chr2R 19168834 intron CG10737 + chr2R_5_19165001 chr2R_19165001 RAL-859 604 chr2R 19203323 19203334 chr2R 19203739 19203750 4 416 15.0 20.0 17.5 0.2 427 chr2R 19203323 intron hppy + chr2R 19203536 intron hppy + chr2R 19203750 intron hppy + chr2R_4_19200001 chr2R_19200001 RAL-859 605 chr2R 19234844 19234862 chr2R 19234926 19234944 7 82 3.5 3.0 3.2 1.7 100 chr2R 19234844 intron cora + chr2R 19234894 intron cora + chr2R 19234944 intron cora + chr2R_7_19230001 chr2R_19230001 RAL-859 606 chr2R 19281540 19281546 chr2R 19281620 19281626 4 80 4.0 7.5 5.8 0.6 86 chr2R 19281540 3` UTR CG11906 - chr2R 19281583 3` UTR CG11906 - chr2R 19281626 exon CG11906 - chr2R_4_19280001 chr2R_19280001 RAL-859 607 chr2R 19300963 19300993 chr2R 19301046 19301077 8 83 1.5 1.5 1.5 3.2 114 chr2R 19300963 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301077 intron Tab2 + chr2R_8_19300001 chr2R_19300001 RAL-859 608 chr2R 19536467 19536498 chr2R 19536549 19536580 7 82 1.5 2.5 2.0 2.3 113 chr2R 19536467 intron sm - chr2R 19536524 intron sm - chr2R 19536580 intron sm - chr2R_7_19535001 chr2R_19535001 RAL-859 609 chr2R 19549625 19549645 chr2R 19549706 19549726 4 81 1.5 2.0 1.8 1.4 101 chr2R 19549625 intron sm - chr2R 19549676 intron sm - chr2R 19549726 intron sm - chr2R_4_19545001 chr2R_19545001 RAL-859 610 chr2R 19652872 19652891 chr2R 19653233 19653253 6 363 4.5 3.5 4.0 1.2 381 chr2R 19652872 3` UTR CR44212 - chr2R 19653062 intergenic CR44212 -,CR44213 + chr2R 19653253 intergenic CR44213 +,CR44212 - chr2R_6_19650001 chr2R_19650001 RAL-859 611 chr2R 19776598 19776628 chr2R 19779919 19779951 jockey 11 3322 1.5 2.5 2.0 3.7 3353 chr2R 19776598 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779951 intergenic not near genes chr2R_11_19775001 chr2R_19775001 RAL-859 612 chr2R 19957428 19957463 chr2R 19962630 19962664 copia 9 5202 0.5 0.5 0.5 6.0 5236 chr2R 19957428 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962664 intergenic not near genes chr2R_9_19960001 chr2R_19960001 RAL-859 613 chr2R 20009496 20009527 chr2R 20009575 20009605 8 79 1.0 3.0 2.0 2.7 109 chr2R 20009496 intergenic not near genes chr2R 20009550 intergenic not near genes chr2R 20009605 intergenic not near genes chr2R_8_20005001 chr2R_20005001 RAL-859 614 chr2R 20069236 20069252 chr2R 20071875 20071891 opus 5 2639 0.5 1.0 0.8 2.8 2655 chr2R 20069236 intergenic not near genes chr2R 20070564 intergenic not near genes chr2R 20071891 intergenic not near genes chr2R_5_20070001 chr2R_20070001 RAL-859 615 chr2R 20080600 20080624 chr2R 20080677 20080700 4 77 0.0 1.0 0.5 2.7 100 chr2R 20080600 intergenic not near genes chr2R 20080650 intergenic not near genes chr2R 20080700 intergenic not near genes chr2R_4_20080001 chr2R_20080001 RAL-859 616 chr2R 20125734 20125746 chr2R 20125810 20125822 4 76 1.0 3.0 2.0 1.3 88 chr2R 20125734 intergenic not near genes chr2R 20125778 intergenic not near genes chr2R 20125822 intergenic not near genes chr2R_4_20125001 chr2R_20125001 RAL-859 617 chr2R 20265460 20265491 chr2R 20276769 20276799 9 11309 32.0 24.5 28.2 0.3 11339 chr2R 20265460 exon CG8908 + chr2R 20271130 intergenic CG8908 + chr2R 20276799 exon CG9143 - chr2R_9_20270001 chr2R_20270001 RAL-859 618 chr2R 20346662 20346696 chr2R 20346768 20346802 9 106 2.0 3.0 2.5 2.6 140 chr2R 20346662 intergenic CG16741 + chr2R 20346732 intergenic CG16741 + chr2R 20346802 intergenic CG16741 + chr2R_9_20345001 chr2R_20345001 RAL-859 619 chr2R 20383215 20383228 chr2R 20383298 20383311 5 83 3.0 0.5 1.8 1.8 96 chr2R 20383215 intergenic not near genes chr2R 20383263 intergenic not near genes chr2R 20383311 intergenic not near genes chr2R_5_20380001 chr2R_20380001 RAL-859 620 chr2R 20395172 20395192 chr2R 20395250 20395270 4 78 2.0 1.0 1.5 1.6 98 chr2R 20395172 intergenic not near genes chr2R 20395221 intergenic not near genes chr2R 20395270 intergenic not near genes chr2R_4_20395001 chr2R_20395001 RAL-859 621 chr2R 20405082 20405092 chr2R 20405168 20405178 4 86 0.5 2.5 1.5 1.6 96 chr2R 20405082 intergenic not near genes chr2R 20405130 intergenic not near genes chr2R 20405178 intergenic not near genes chr2R_4_20405001 chr2R_20405001 RAL-859 622 chr2R 20414486 20414507 chr2R 20414568 20414590 12 83 2.5 2.0 2.2 3.8 104 chr2R 20414486 intergenic not near genes chr2R 20414538 intergenic not near genes chr2R 20414590 intergenic not near genes chr2R_12_20410001 chr2R_20410001 RAL-859 623 chr2R 20432483 20432502 chr2R 20432579 20432598 5 95 1.5 2.0 1.8 1.8 115 chr2R 20432483 intron CG12484 + chr2R 20432540 intron CG12484 + chr2R 20432598 intron CG12484 + chr2R_5_20430001 chr2R_20430001 RAL-859 624 chr2R 20506218 20506242 chr2R 20506323 20506348 5 106 3.5 5.5 4.5 0.9 130 chr2R 20506218 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506283 3` UTR,5` UTR CR44644 -,CR44645 + chr2R 20506348 3` UTR,5` UTR CR44644 -,CR44645 + chr2R_5_20505001 chr2R_20505001 RAL-859 625 chr2R 20601721 20601752 chr2R 20601806 20601837 9 85 0.0 3.0 1.5 3.6 116 chr2R 20601721 intron bl + chr2R 20601779 intron bl + chr2R 20601837 intron bl + chr2R_9_20600001 chr2R_20600001 RAL-859 626 chr2R 20783311 20783328 chr2R 20788083 20788100 F-element 9 4772 2.0 1.0 1.5 3.6 4789 chr2R 20783311 intergenic not near genes chr2R 20785706 intergenic not near genes chr2R 20788100 intergenic CG43666 - chr2R_9_20785001 chr2R_20785001 RAL-859 627 chr2R 20962907 20962916 chr2R 20963005 20963014 5 98 7.0 3.0 5.0 0.8 107 chr2R 20962907 intergenic not near genes chr2R 20962960 intergenic not near genes chr2R 20963014 intergenic not near genes chr2R_5_20960001 chr2R_20960001 RAL-859 628 chr2R 21117469 21117492 chr2R 21117825 21117848 6 356 1.0 2.0 1.5 2.4 379 chr2R 21117469 intron ktub + chr2R 21117658 intron ktub + chr2R 21117848 intron ktub + chr2R_6_21115001 chr2R_21115001 RAL-859 629 chr2R 21592845 21592855 chr2R 21592927 21592938 6 82 8.5 7.0 7.8 0.7 93 chr2R 21592845 intergenic not near genes chr2R 21592892 intergenic not near genes chr2R 21592938 intergenic not near genes chr2R_6_21590001 chr2R_21590001 RAL-859 630 chr2R 21700159 21700182 chr2R 21700245 21700268 7 86 1.5 4.5 3.0 1.8 109 chr2R 21700159 intron HmgZ - chr2R 21700214 intron HmgZ - chr2R 21700268 intron HmgZ - chr2R_7_21700001 chr2R_21700001 RAL-859 631 chr2R 21738275 21738308 chr2R 21747435 21747467 roo 4 9160 1.5 0.0 0.8 2.2 9192 chr2R 21738275 intergenic not near genes chr2R 21742871 intergenic not near genes chr2R 21747467 intergenic not near genes chr2R_4_21740001 chr2R_21740001 RAL-859 632 chr2R 21753084 21753117 chr2R 21753569 21753602 roo 11 485 2.5 2.0 2.2 3.4 518 chr2R 21753084 intergenic not near genes chr2R 21753343 intergenic not near genes chr2R 21753602 intergenic not near genes chr2R_11_21750001 chr2R_21750001 RAL-859 633 chr2R 21777271 21777427 chr2R 21777353 21777510 21 82 3.0 3.0 3.0 5.2 239 chr2R 21777271 intergenic not near genes chr2R 21777390 intergenic not near genes chr2R 21777510 intergenic not near genes chr2R_21_21775001 chr2R_21775001 RAL-859 634 chr2R 21809528 21809558 chr2R 21817765 21817798 roo 11 8239 1.5 4.0 2.8 2.9 8270 chr2R 21809528 intergenic not near genes chr2R 21813663 intergenic not near genes chr2R 21817798 intergenic not near genes chr2R_11_21810001 chr2R_21810001 RAL-859 635 chr2R 21857347 21857365 chr2R 21857438 21857455 4 91 4.0 2.0 3.0 1.0 108 chr2R 21857347 intergenic not near genes chr2R 21857401 intergenic not near genes chr2R 21857455 intergenic not near genes chr2R_4_21855001 chr2R_21855001 RAL-859 636 chr2R 21894886 21894919 chr2R 21894964 21894995 5 76 1.5 1.5 1.5 2.0 109 chr2R 21894886 intron Fili + chr2R 21894940 intron Fili + chr2R 21894995 intron Fili + chr2R_5_21890001 chr2R_21890001 RAL-859 637 chr2R 22040154 22040186 chr2R 22040235 22040265 4 80 3.0 2.0 2.5 1.1 111 chr2R 22040154 intergenic not near genes chr2R 22040210 intergenic not near genes chr2R 22040265 intergenic not near genes chr2R_4_22040001 chr2R_22040001 RAL-859 638 chr2R 22185677 22185708 chr2R 22185776 22185807 4 99 2.0 0.0 1.0 2.0 130 chr2R 22185677 3` UTR MED16 + chr2R 22185742 3` UTR MED16 + chr2R 22185807 3` UTR MED16 + chr2R_4_22185001 chr2R_22185001 RAL-859 639 chr2R 22189445 22189461 chr2R 22189572 22189588 4 127 3.0 1.5 2.2 1.2 143 chr2R 22189445 3` UTR Vps35 + chr2R 22189516 3` UTR Vps35 + chr2R 22189588 3` UTR Vps35 + chr2R_4_22185001 chr2R_22185001 RAL-859 640 chr2R 22206597 22206603 chr2R 22209505 22209511 4 2908 18.0 5.0 11.5 0.3 2914 chr2R 22206597 exon CG3290 - chr2R 22208054 intergenic CG3290 -,CG3264 - chr2R 22209511 intron CG3264 - chr2R_4_22205001 chr2R_22205001 RAL-859 641 chr2R 22248850 22248874 chr2R 22248927 22248951 8 77 1.5 3.5 2.5 2.3 101 chr2R 22248850 intron dve + chr2R 22248900 intron dve + chr2R 22248951 intron dve + chr2R_8_22245001 chr2R_22245001 RAL-859 642 chr2R 22290080 22290104 chr2R 22290164 22290188 5 84 0.5 1.5 1.0 2.5 108 chr2R 22290080 intergenic not near genes chr2R 22290134 intergenic not near genes chr2R 22290188 intergenic not near genes chr2R_5_22290001 chr2R_22290001 RAL-859 643 chr2R 22349690 22349718 chr2R 22351474 22351501 jockey 12 1783 1.0 1.0 1.0 6.0 1811 chr2R 22349690 intron Liprin-gamma - chr2R 22350596 intron Liprin-gamma - chr2R 22351501 intron Liprin-gamma - chr2R_12_22350001 chr2R_22350001 RAL-859 644 chr2R 22441113 22441136 chr2R 22441197 22441220 7 84 3.5 3.5 3.5 1.6 107 chr2R 22441113 intergenic not near genes chr2R 22441166 intergenic not near genes chr2R 22441220 intergenic not near genes chr2R_7_22440001 chr2R_22440001 RAL-859 645 chr2R 22460386 22460406 chr2R 22460465 22460485 6 79 1.5 4.0 2.8 1.6 99 chr2R 22460386 intron CG10384 + chr2R 22460436 intron CG10384 + chr2R 22460485 intron CG10384 + chr2R_6_22460001 chr2R_22460001 RAL-859 646 chr2R 22525746 22525785 chr2R 22529301 22529340 jockey 11 3555 1.5 4.0 2.8 2.9 3594 chr2R 22525746 intron px - chr2R 22527543 intron px - chr2R 22529340 intron px - chr2R_11_22525001 chr2R_22525001 RAL-859 647 chr2R 22549436 22549472 chr2R 22549521 22549557 11 85 1.0 2.0 1.5 4.4 121 chr2R 22549436 intron px - chr2R 22549496 intron px - chr2R 22549557 intron px - chr2R_11_22545001 chr2R_22545001 RAL-859 648 chr2R 22580439 22580445 chr2R 22586583 22586589 diver 4 6144 2.5 1.5 2.0 1.3 6150 chr2R 22580439 intron dnr1 - chr2R 22583514 intron dnr1 - chr2R 22586589 intron dnr1 - chr2R_4_22580001 chr2R_22580001 RAL-859 649 chr2R 22623451 22623481 chr2R 22623591 22623621 11 140 3.0 2.5 2.8 2.9 170 chr2R 22623451 intron CG33143 + chr2R 22623536 intron CG33143 + chr2R 22623621 intron CG33143 + chr2R_11_22620001 chr2R_22620001 RAL-859 650 chr2R 22725591 22725605 chr2R 22725672 22725687 6 82 2.5 3.5 3.0 1.5 96 chr2R 22725591 intron jbug - chr2R 22725639 intron jbug - chr2R 22725687 intron jbug - chr2R_6_22725001 chr2R_22725001 RAL-859 651 chr2R 22756573 22756585 chr2R 22756650 22756662 9 77 4.0 4.0 4.0 1.8 89 chr2R 22756573 intron,intron CG42260 -,CR30267 + chr2R 22756618 intron,intron CG42260 -,CR30267 + chr2R 22756662 intron,intron CG42260 -,CR30267 + chr2R_9_22755001 chr2R_22755001 RAL-859 652 chr2R 22774969 22775002 chr2R 22775388 22775421 jockey 17 419 2.0 4.0 3.0 4.2 452 chr2R 22774969 intron CG42260 - chr2R 22775195 intron CG42260 - chr2R 22775421 intron CG42260 - chr2R_17_22775001 chr2R_22775001 RAL-859 653 chr2R 22789822 22789849 chr2R 22790113 22790140 9 290 2.5 1.0 1.8 3.2 318 chr2R 22789822 intron CG42260 - chr2R 22789981 intron CG42260 - chr2R 22790140 intron CG42260 - chr2R_9_22785001 chr2R_22785001 RAL-859 654 chr2R 22907415 22907445 chr2R 22907500 22907530 13 85 3.0 3.5 3.2 3.1 115 chr2R 22907415 intron nahoda + chr2R 22907472 intron nahoda + chr2R 22907530 intron nahoda + chr2R_13_22905001 chr2R_22905001 RAL-859 655 chr2R 22909425 22909452 chr2R 22909564 22909591 8 139 2.0 0.0 1.0 4.0 166 chr2R 22909425 intron nahoda + chr2R 22909508 intron nahoda + chr2R 22909591 intron nahoda + chr2R_8_22905001 chr2R_22905001 RAL-859 656 chr2R 22941825 22941855 chr2R 22941903 22941934 5 78 0.0 3.0 1.5 2.0 109 chr2R 22941825 intergenic CG42694 + chr2R 22941880 5` UTR CG42694 + chr2R 22941934 5` UTR CG42694 + chr2R_5_22940001 chr2R_22940001 RAL-859 657 chr2R 22957053 22957061 chr2R 22957132 22957140 4 79 3.5 2.5 3.0 1.0 87 chr2R 22957053 intergenic CR44780 - chr2R 22957096 intergenic CR44780 - chr2R 22957140 intergenic CR44780 - chr2R_4_22955001 chr2R_22955001 RAL-859 658 chr2R 23052310 23052319 chr2R 23052598 23052607 5 288 3.5 5.0 4.2 1.0 297 chr2R 23052310 intergenic not near genes chr2R 23052458 intergenic not near genes chr2R 23052607 intergenic not near genes chr2R_5_23050001 chr2R_23050001 RAL-859 659 chr2R 23061759 23061782 chr2R 23061833 23061858 7 75 0.0 2.0 1.0 3.5 99 chr2R 23061759 3` UTR l(2)06496 - chr2R 23061808 3` UTR l(2)06496 - chr2R 23061858 3` UTR l(2)06496 - chr2R_7_23060001 chr2R_23060001 RAL-859 660 chr2R 23175038 23175068 chr2R 23175115 23175145 10 77 1.5 3.0 2.2 3.1 107 chr2R 23175038 intron CG34371 - chr2R 23175092 intron CG34371 - chr2R 23175145 intron CG34371 - chr2R_10_23175001 chr2R_23175001 RAL-859 661 chr2R 23190030 23190046 chr2R 23190110 23190125 5 80 4.0 0.0 2.0 1.7 95 chr2R 23190030 intron CG34371 - chr2R 23190078 intron CG34371 - chr2R 23190125 intron CG34371 - chr2R_5_23190001 chr2R_23190001 RAL-859 662 chr2R 23217207 23217240 chr2R 23217321 23217354 10 114 3.0 1.5 2.2 3.1 147 chr2R 23217207 intergenic not near genes chr2R 23217280 intergenic not near genes chr2R 23217354 intergenic not near genes chr2R_10_23215001 chr2R_23215001 RAL-859 663 chr2R 23219010 23219024 chr2R 23219249 23219263 4 239 2.0 0.0 1.0 2.0 253 chr2R 23219010 intergenic not near genes chr2R 23219136 intergenic not near genes chr2R 23219263 intergenic not near genes chr2R_4_23215001 chr2R_23215001 RAL-859 664 chr2R 23350514 23350542 chr2R 23350641 23350669 17 127 2.5 2.0 2.2 5.3 155 chr2R 23350514 intergenic not near genes chr2R 23350592 intergenic not near genes chr2R 23350669 intergenic not near genes chr2R_17_23350001 chr2R_23350001 RAL-859 665 chr2R 23356278 23356309 chr2R 23356367 23356398 8 89 2.0 6.0 4.0 1.6 120 chr2R 23356278 3` UTR Rpi + chr2R 23356338 3` UTR Rpi + chr2R 23356398 3` UTR,3` UTR Rpi +,CG3500 - chr2R_8_23355001 chr2R_23355001 RAL-859 666 chr2R 23422644 23422675 chr2R 23422724 23422755 16 80 3.5 2.0 2.8 4.2 111 chr2R 23422644 intron CG9815 - chr2R 23422700 intron CG9815 - chr2R 23422755 intron CG9815 - chr2R_16_23420001 chr2R_23420001 RAL-859 667 chr2R 23423743 23423770 chr2R 23423901 23423928 4 158 1.0 2.5 1.8 1.4 185 chr2R 23423743 intron CG9815 - chr2R 23423836 intron CG9815 - chr2R 23423928 intron CG9815 - chr2R_4_23420001 chr2R_23420001 RAL-859 668 chr2R 23463393 23463417 chr2R 23463472 23463496 6 78 3.0 3.5 3.2 1.4 103 chr2R 23463393 intron CG43795 + chr2R 23463444 intron CG43795 + chr2R 23463496 intron CG43795 + chr2R_6_23460001 chr2R_23460001 RAL-859 669 chr2R 23508924 23508943 chr2R 23509041 23509060 5 117 1.5 2.5 2.0 1.7 136 chr2R 23508924 intergenic not near genes chr2R 23508992 intergenic not near genes chr2R 23509060 intergenic not near genes chr2R_5_23505001 chr2R_23505001 RAL-859 670 chr2R 23520051 23520083 chr2R 23520143 23520175 15 92 5.0 3.5 4.2 2.9 124 chr2R 23520051 3` UTR RabX1 - chr2R 23520113 3` UTR RabX1 - chr2R 23520175 3` UTR RabX1 - chr2R_15_23520001 chr2R_23520001 RAL-859 671 chr2R 23529580 23529606 chr2R 23537155 23537181 412 7 7575 1.5 5.0 3.2 1.7 7601 chr2R 23529580 intron bw - chr2R 23533380 intron bw - chr2R 23537181 exon bw - chr2R_7_23530001 chr2R_23530001 RAL-859 672 chr2R 23563894 23563921 chr2R 23563974 23564001 10 80 1.5 4.0 2.8 2.6 107 chr2R 23563894 3` UTR Pi3K59F + chr2R 23563948 3` UTR Pi3K59F + chr2R 23564001 3` UTR,5` UTR Pi3K59F +,CG30184 + chr2R_10_23560001 chr2R_23560001 RAL-859 673 chr2R 23568420 23568437 chr2R 23568521 23568538 6 101 4.0 0.5 2.2 1.9 118 chr2R 23568420 intron apt + chr2R 23568479 intron apt + chr2R 23568538 intron apt + chr2R_6_23565001 chr2R_23565001 RAL-859 674 chr2R 23594835 23594869 chr2R 23595052 23595086 7 216 2.0 1.5 1.8 2.5 251 chr2R 23594835 intron apt + chr2R 23594960 intron apt + chr2R 23595086 intron apt + chr2R_7_23590001 chr2R_23590001 RAL-859 675 chr2R 23607036 23607190 chr2R 23607117 23607283 7 83 3.0 4.5 3.8 1.5 247 chr2R 23607036 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607283 intron CG17664 - chr2R_7_23605001 chr2R_23605001 RAL-859 676 chr2R 23653973 23654003 chr2R 23654050 23654077 7 76 2.5 1.0 1.8 2.5 104 chr2R 23653973 3` UTR retn + chr2R 23654025 3` UTR retn + chr2R 23654077 3` UTR retn + chr2R_7_23650001 chr2R_23650001 RAL-859 677 chr2R 23724940 23724966 chr2R 23725057 23725085 5 118 0.0 1.5 0.8 2.8 145 chr2R 23724940 intron Sesn + chr2R 23725012 intron Sesn + chr2R 23725085 intron Sesn + chr2R_5_23725001 chr2R_23725001 RAL-859 678 chr2R 23784470 23784507 chr2R 23784548 23784585 10 78 1.5 2.0 1.8 3.6 115 chr2R 23784470 intron CG9850 - chr2R 23784528 intron CG9850 - chr2R 23784585 intron CG9850 - chr2R_10_23780001 chr2R_23780001 RAL-859 679 chr2R 23914312 23914328 chr2R 23921934 23921951 412 7 7623 3.5 4.0 3.8 1.5 7639 chr2R 23914312 exon kcc + chr2R 23918132 intron kcc + chr2R 23921951 intron kcc + chr2R_7_23915001 chr2R_23915001 RAL-859 680 chr2R 24031381 24031407 chr2R 24031465 24031491 7 84 2.5 1.5 2.0 2.3 110 chr2R 24031381 5` UTR CG30172 - chr2R 24031436 intergenic CG30172 -,Chi - chr2R 24031491 intergenic Chi -,CG30172 - chr2R_7_24030001 chr2R_24030001 RAL-859 681 chr2R 24045876 24045898 chr2R 24045960 24045982 7 84 2.0 2.5 2.2 2.2 106 chr2R 24045876 intron tsr - chr2R 24045929 intron tsr - chr2R 24045982 intron tsr - chr2R_7_24045001 chr2R_24045001 RAL-859 682 chr2R 24147070 24147085 chr2R 24154648 24154662 412 8 7578 5.5 2.5 4.0 1.6 7592 chr2R 24147070 intron Dat + chr2R 24150866 intron Dat + chr2R 24154662 intron Dat + chr2R_8_24150001 chr2R_24150001 RAL-859 683 chr2R 24177237 24177269 chr2R 24184722 24184754 412 7 7485 2.0 4.0 3.0 1.8 7517 chr2R 24177237 3` UTR Nop60B + chr2R 24180996 intron Nop60B + chr2R 24184754 3` UTR Nop60B + chr2R_7_24180001 chr2R_24180001 RAL-859 684 chr2R 24303522 24303535 chr2R 24303601 24303613 4 78 3.5 1.5 2.5 1.1 91 chr2R 24303522 intergenic not near genes chr2R 24303568 intergenic not near genes chr2R 24303613 intergenic not near genes chr2R_4_24300001 chr2R_24300001 RAL-859 685 chr2R 24321135 24321148 chr2R 24321233 24321246 5 98 4.0 2.0 3.0 1.2 111 chr2R 24321135 intergenic not near genes chr2R 24321190 intergenic not near genes chr2R 24321246 intergenic not near genes chr2R_5_24320001 chr2R_24320001 RAL-859 686 chr2R 24353427 24353461 chr2R 24361789 24361823 roo 11 8362 0.5 1.5 1.0 5.5 8396 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357625 intron,intron bs +,CR44811 - chr2R 24361823 intron,intron bs +,CR44811 - chr2R_11_24355001 chr2R_24355001 RAL-859 687 chr2R 24383833 24383856 chr2R 24383910 24383937 8 80 1.5 2.0 1.8 2.9 104 chr2R 24383833 intron mAChR-A - chr2R 24383885 intron mAChR-A - chr2R 24383937 exon mAChR-A - chr2R_8_24380001 chr2R_24380001 RAL-859 688 chr2R 24430809 24430837 chr2R 24430890 24430918 7 81 2.0 1.0 1.5 2.8 109 chr2R 24430809 intergenic CG15873 - chr2R 24430864 intergenic CG15873 -,Pgam5-2 - chr2R 24430918 intergenic CG15873 -,Pgam5-2 - chr2R_7_24430001 chr2R_24430001 RAL-859 689 chr2R 24590118 24590144 chr2R 24590210 24590236 14 92 3.0 5.5 4.2 2.7 118 chr2R 24590118 intron pio + chr2R 24590177 intron pio + chr2R 24590236 intron pio + chr2R_14_24590001 chr2R_24590001 RAL-859 690 chr2R 24591519 24591546 chr2R 24591595 24591622 8 76 1.5 1.0 1.2 3.6 103 chr2R 24591519 intron pio + chr2R 24591570 intron pio + chr2R 24591622 intron pio + chr2R_8_24590001 chr2R_24590001 RAL-859 691 chr2R 24689727 24689756 chr2R 24689816 24689845 8 88 4.0 2.5 3.2 1.9 118 chr2R 24689727 intergenic not near genes chr2R 24689786 intergenic not near genes chr2R 24689845 intergenic not near genes chr2R_8_24685001 chr2R_24685001 RAL-859 692 chr2R 24727887 24727917 chr2R 24735394 24735425 mdg1 12 7508 2.0 5.0 3.5 2.7 7538 chr2R 24727887 intron Mid1 - chr2R 24731656 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_12_24730001 chr2R_24730001 RAL-859 693 chr2R 24763609 24763637 chr2R 24765585 24765613 G2 10 1976 2.5 3.5 3.0 2.5 2004 chr2R 24763609 exon CG3894 + chr2R 24764611 intron CG3894 + chr2R 24765613 exon CG3894 + chr2R_10_24760001 chr2R_24760001 RAL-859 694 chr2R 24859841 24859865 chr2R 24859927 24859950 5 86 3.5 1.0 2.2 1.6 109 chr2R 24859841 5` UTR CR44829 + chr2R 24859896 5` UTR CR44829 + chr2R 24859950 5` UTR CR44829 + chr2R_5_24855001 chr2R_24855001 RAL-859 695 chr2R 24884053 24884074 chr2R 24884134 24884156 5 82 1.5 3.0 2.2 1.6 103 chr2R 24884053 intron NKAIN + chr2R 24884104 intron NKAIN + chr2R 24884156 intron NKAIN + chr2R_5_24880001 chr2R_24880001 RAL-859 696 chr2R 24897922 24897950 chr2R 24898003 24898031 8 81 3.0 4.5 3.8 1.7 109 chr2R 24897922 intron,3` UTR NaCP60E +,Tpc2 - chr2R 24897976 intron,3` UTR NaCP60E +,Tpc2 - chr2R 24898031 intron,3` UTR NaCP60E +,Tpc2 - chr2R_8_24895001 chr2R_24895001 RAL-859 697 chr2R 25004897 25004922 chr2R 25004975 25005000 6 78 2.0 2.5 2.2 1.9 103 chr2R 25004897 intron zip - chr2R 25004948 intron zip - chr2R 25005000 intron zip - chr2R_6_25000001 chr2R_25000001 RAL-859 698 chr2R 25014545 25014573 chr2R 25014621 25014649 8 76 2.5 1.5 2.0 2.7 104 chr2R 25014545 intron uzip + chr2R 25014597 intron uzip + chr2R 25014649 intron uzip + chr2R_8_25010001 chr2R_25010001 RAL-859 699 chr2R 25018340 25018375 chr2R 25018439 25018476 9 101 2.5 4.5 3.5 2.0 136 chr2R 25018340 intron uzip + chr2R 25018408 intron uzip + chr2R 25018476 intron uzip + chr2R_9_25015001 chr2R_25015001 RAL-859 700 chr2R 25022644 25022664 chr2R 25022728 25022748 4 84 2.5 2.5 2.5 1.1 104 chr2R 25022644 intron uzip + chr2R 25022696 intron uzip + chr2R 25022748 intron uzip + chr2R_4_25020001 chr2R_25020001 RAL-859 701 chr2R 25061999 25062011 chr2R 25062074 25062090 6 78 4.0 3.0 3.5 1.3 91 chr2R 25061999 5` UTR gsb + chr2R 25062044 5` UTR gsb + chr2R 25062090 5` UTR gsb + chr2R_6_25060001 chr2R_25060001 RAL-859 702 chr2R 25080306 25080334 chr2R 25080676 25080704 6 370 1.5 0.5 1.0 3.0 398 chr2R 25080306 intron gol - chr2R 25080505 intron gol - chr2R 25080704 intron gol - chr2R_6_25080001 chr2R_25080001 RAL-859 703 chr2R 25081606 25081633 chr2R 25082701 25082729 12 1096 2.0 2.5 2.2 3.8 1123 chr2R 25081606 intron gol - chr2R 25082168 intron gol - chr2R 25082729 intron gol - chr2R_12_25080001 chr2R_25080001 RAL-859 704 chr2R 25101284 25101302 chr2R 25101386 25101404 8 102 1.0 2.0 1.5 3.2 120 chr2R 25101284 intron lov - chr2R 25101344 intron lov - chr2R 25101404 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-859 705 chr2R 25122961 25122990 chr2R 25123040 25123068 6 79 1.5 1.0 1.2 2.7 107 chr2R 25122961 intron lov - chr2R 25123014 intron lov - chr2R 25123068 intron lov - chr2R_6_25120001 chr2R_25120001 RAL-859 706 chr2R 25141665 25141684 chr2R 25159355 25159374 roo 4 17690 2.5 5.5 4.0 0.8 17709 chr2R 25141665 intergenic not near genes chr2R 25150520 intergenic not near genes chr2R 25159374 intergenic not near genes chr2R_4_25150001 chr2R_25150001 RAL-859 707 chr2R 25176895 25176927 chr2R 25177162 25177194 5 267 2.0 1.0 1.5 2.0 299 chr2R 25176895 intergenic Peb - chr2R 25177044 intergenic Peb - chr2R 25177194 intergenic Peb - chr2R_5_25175001 chr2R_25175001 RAL-859 708 chr2R 25181101 25181136 chr2R 25181198 25181233 10 97 1.0 2.5 1.8 3.6 132 chr2R 25181101 intergenic not near genes chr2R 25181167 intergenic not near genes chr2R 25181233 intergenic not near genes chr2R_10_25180001 chr2R_25180001 RAL-859 709 chr2R 25193345 25193358 chr2R 25193487 25193499 4 142 2.0 0.5 1.2 1.8 154 chr2R 25193345 intron CG9380 - chr2R 25193422 intron CG9380 - chr2R 25193499 intron CG9380 - chr2R_4_25190001 chr2R_25190001 RAL-859 710 chr2R 25253445 25253475 chr2R 25253521 25253549 4 76 1.0 2.0 1.5 1.6 104 chr2R 25253445 intron,intron CG9380 -,CG30428 + chr2R 25253497 intron,intron CG9380 -,CG30428 + chr2R 25253549 intron,intron CG9380 -,CG30428 + chr2R_4_25250001 chr2R_25250001 RAL-859 711 chr3L 87064 87083 chr3L 87346 87365 4 282 1.0 1.0 1.0 2.0 301 chr3L 87064 intergenic not near genes chr3L 87214 intergenic not near genes chr3L 87365 intergenic not near genes chr3L_4_85001 chr3L_85001 RAL-859 712 chr3L 108950 108981 chr3L 109029 109060 5 79 2.0 5.0 3.5 1.1 110 chr3L 108950 intergenic not near genes chr3L 109005 intergenic not near genes chr3L 109060 intergenic not near genes chr3L_5_105001 chr3L_105001 RAL-859 713 chr3L 110223 110237 chr3L 119390 119404 roo 5 9167 2.5 4.0 3.2 1.2 9181 chr3L 110223 intergenic not near genes chr3L 114814 intergenic not near genes chr3L 119404 intergenic not near genes chr3L_5_110001 chr3L_110001 RAL-859 714 chr3L 315674 315699 chr3L 315754 315781 7 81 3.5 5.5 4.5 1.3 107 chr3L 315674 intron fwd - chr3L 315728 intron fwd - chr3L 315781 intron fwd - chr3L_7_315001 chr3L_315001 RAL-859 715 chr3L 390957 390985 chr3L 391063 391091 12 106 4.0 1.5 2.8 3.2 134 chr3L 390957 intron trh - chr3L 391024 intron trh - chr3L 391091 intron trh - chr3L_12_390001 chr3L_390001 RAL-859 716 chr3L 402689 402713 chr3L 409742 409766 297 11 7053 6.0 3.0 4.5 2.0 7077 chr3L 402689 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409766 intergenic not near genes chr3L_11_405001 chr3L_405001 RAL-859 717 chr3L 416132 416165 chr3L 416220 416253 8 88 4.5 2.0 3.2 1.9 121 chr3L 416132 intergenic not near genes chr3L 416192 intergenic not near genes chr3L 416253 intergenic not near genes chr3L_8_415001 chr3L_415001 RAL-859 718 chr3L 428198 428210 chr3L 428319 428331 4 121 2.0 0.0 1.0 2.0 133 chr3L 428198 intergenic not near genes chr3L 428264 intergenic not near genes chr3L 428331 intergenic not near genes chr3L_4_425001 chr3L_425001 RAL-859 719 chr3L 563970 564002 chr3L 564149 564178 8 179 2.0 4.5 3.2 1.9 208 chr3L 563970 intron hipk + chr3L 564074 intron hipk + chr3L 564178 intron hipk + chr3L_8_560001 chr3L_560001 RAL-859 720 chr3L 606893 606919 chr3L 606969 606998 4 77 0.0 0.0 0.0 4.0 105 chr3L 606893 intergenic Reg-2 - chr3L 606946 intergenic Reg-2 - chr3L 606998 intergenic Reg-2 - chr3L_4_605001 chr3L_605001 RAL-859 721 chr3L 642468 642499 chr3L 642559 642588 9 91 3.0 1.0 2.0 3.0 120 chr3L 642468 5` UTR CR43334 + chr3L 642528 5` UTR CR43334 + chr3L 642588 5` UTR CR43334 + chr3L_9_640001 chr3L_640001 RAL-859 722 chr3L 651388 651422 chr3L 651476 651510 16 88 2.5 3.0 2.8 4.2 122 chr3L 651388 intergenic Gale +,CG3402 - chr3L 651449 intergenic CG3402 -,Gale + chr3L 651510 intergenic CG3402 -,Gale + chr3L_16_650001 chr3L_650001 RAL-859 723 chr3L 732827 732833 chr3L 733049 733055 4 222 3.0 2.5 2.8 1.1 228 chr3L 732827 intergenic not near genes chr3L 732941 intergenic not near genes chr3L 733055 intergenic not near genes chr3L_4_730001 chr3L_730001 RAL-859 724 chr3L 789920 789934 chr3L 790398 790412 roo 6 478 0.5 0.0 0.2 5.0 492 chr3L 789920 intergenic not near genes chr3L 790166 intergenic not near genes chr3L 790412 intergenic not near genes chr3L_6_790001 chr3L_790001 RAL-859 725 chr3L 857998 858028 chr3L 866478 866509 Tirant 7 8481 1.5 1.5 1.5 2.8 8511 chr3L 857998 intergenic not near genes chr3L 862254 intergenic not near genes chr3L 866509 5` UTR CG12502 + chr3L_7_860001 chr3L_860001 RAL-859 726 chr3L 901423 901447 chr3L 901504 901529 5 83 0.5 2.5 1.5 2.0 106 chr3L 901423 intergenic not near genes chr3L 901476 intergenic not near genes chr3L 901529 intergenic not near genes chr3L_5_900001 chr3L_900001 RAL-859 727 chr3L 906840 906861 chr3L 906916 906935 9 75 4.5 2.5 3.5 2.0 95 chr3L 906840 intergenic not near genes chr3L 906888 intergenic not near genes chr3L 906935 intergenic not near genes chr3L_9_905001 chr3L_905001 RAL-859 728 chr3L 925176 925209 chr3L 932602 932634 mdg1 10 7426 1.0 2.5 1.8 3.6 7458 chr3L 925176 intron Glut1 + chr3L 928905 intron Glut1 + chr3L 932634 intron Glut1 + chr3L_10_925001 chr3L_925001 RAL-859 729 chr3L 933917 933943 chr3L 934020 934046 8 103 2.0 2.0 2.0 2.7 129 chr3L 933917 intron Glut1 + chr3L 933982 intron Glut1 + chr3L 934046 intron Glut1 + chr3L_8_930001 chr3L_930001 RAL-859 730 chr3L 939772 939799 chr3L 940892 940920 jockey 6 1121 6.0 2.0 4.0 1.2 1148 chr3L 939772 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940920 intron Glut1 + chr3L_6_940001 chr3L_940001 RAL-859 731 chr3L 958314 958341 chr3L 958398 958425 7 84 5.0 3.0 4.0 1.4 111 chr3L 958314 intron Glut1 + chr3L 958370 intron Glut1 + chr3L 958425 intron Glut1 + chr3L_7_955001 chr3L_955001 RAL-859 732 chr3L 1021604 1021624 chr3L 1021680 1021700 6 75 1.0 2.0 1.5 2.4 96 chr3L 1021604 intron trio - chr3L 1021652 intron trio - chr3L 1021700 intron trio - chr3L_6_1020001 chr3L_1020001 RAL-859 733 chr3L 1031577 1031613 chr3L 1031653 1031688 8 75 1.5 1.5 1.5 3.2 111 chr3L 1031577 intron trio - chr3L 1031632 intron trio - chr3L 1031688 intron trio - chr3L_8_1030001 chr3L_1030001 RAL-859 734 chr3L 1040548 1040578 chr3L 1040632 1040662 8 84 4.0 2.0 3.0 2.0 114 chr3L 1040548 intron bab1 - chr3L 1040605 intron bab1 - chr3L 1040662 intron bab1 - chr3L_8_1040001 chr3L_1040001 RAL-859 735 chr3L 1109640 1109662 chr3L 1109726 1109750 6 88 1.5 2.5 2.0 2.0 110 chr3L 1109640 intergenic not near genes chr3L 1109695 intergenic not near genes chr3L 1109750 intergenic not near genes chr3L_6_1105001 chr3L_1105001 RAL-859 736 chr3L 1145243 1145265 chr3L 1145320 1145343 5 78 1.5 0.0 0.8 2.8 100 chr3L 1145243 intron bab2 - chr3L 1145293 intron bab2 - chr3L 1145343 intron bab2 - chr3L_5_1145001 chr3L_1145001 RAL-859 737 chr3L 1371683 1371697 chr3L 1371867 1371881 6 184 1.5 2.0 1.8 2.1 198 chr3L 1371683 intron,intron Ptp61F -,ru + chr3L 1371782 intron,intron Ptp61F -,ru + chr3L 1371881 intron,intron Ptp61F -,ru + chr3L_6_1370001 chr3L_1370001 RAL-859 738 chr3L 1463419 1463444 chr3L 1463500 1463525 12 81 2.5 8.0 5.2 1.9 106 chr3L 1463419 intron Ptp61F - chr3L 1463472 intron Ptp61F - chr3L 1463525 intron Ptp61F - chr3L_12_1460001 chr3L_1460001 RAL-859 739 chr3L 1477391 1477404 chr3L 1477481 1477494 8 90 2.5 0.0 1.2 3.6 103 chr3L 1477391 intron stet - chr3L 1477442 intron stet - chr3L 1477494 intron stet - chr3L_8_1475001 chr3L_1475001 RAL-859 740 chr3L 1505996 1506031 chr3L 1513592 1513628 17.6 8 7597 3.5 2.5 3.0 2.0 7632 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513628 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 RAL-859 741 chr3L 1571481 1571489 chr3L 1571566 1571574 4 85 1.5 5.5 3.5 0.9 93 chr3L 1571481 intron CG12004 + chr3L 1571528 intron CG12004 + chr3L 1571574 intron CG12004 + chr3L_4_1570001 chr3L_1570001 RAL-859 742 chr3L 1581160 1581181 chr3L 1581492 1581515 12 334 0.0 4.0 2.0 4.0 355 chr3L 1581160 intron CG13917 + chr3L 1581338 intron CG13917 + chr3L 1581515 intron CG13917 + chr3L_12_1580001 chr3L_1580001 RAL-859 743 chr3L 1817568 1817597 chr3L 1817653 1817682 7 85 1.5 2.0 1.8 2.5 114 chr3L 1817568 intron GV1 + chr3L 1817625 intron GV1 + chr3L 1817682 intron GV1 + chr3L_7_1815001 chr3L_1815001 RAL-859 744 chr3L 1922451 1922461 chr3L 1922528 1922539 5 78 13.0 5.0 9.0 0.5 88 chr3L 1922451 intron Dbx + chr3L 1922495 intron Dbx + chr3L 1922539 intron Dbx + chr3L_5_1920001 chr3L_1920001 RAL-859 745 chr3L 2163966 2164108 chr3L 2164063 2164255 6 139 0.0 0.0 0.0 6.0 289 chr3L 2163966 intergenic CG15822 - chr3L 2164110 intergenic CG15822 - chr3L 2164255 intergenic CG15822 - chr3L_6_2160001 chr3L_2160001 RAL-859 746 chr3L 2168776 2168798 chr3L 2168867 2168889 4 90 3.0 1.0 2.0 1.3 113 chr3L 2168776 exon CG15879 - chr3L 2168832 intron CG15879 - chr3L 2168889 intron CG15879 - chr3L_4_2165001 chr3L_2165001 RAL-859 747 chr3L 2199811 2199814 chr3L 2199887 2199890 4 76 0.0 3.0 1.5 1.6 79 chr3L 2199811 intergenic not near genes chr3L 2199850 intergenic not near genes chr3L 2199890 intergenic not near genes chr3L_4_2195001 chr3L_2195001 RAL-859 748 chr3L 2321163 2321193 chr3L 2321240 2321269 5 77 2.5 2.0 2.2 1.6 106 chr3L 2321163 intergenic not near genes chr3L 2321216 intergenic not near genes chr3L 2321269 intergenic not near genes chr3L_5_2320001 chr3L_2320001 RAL-859 749 chr3L 2331598 2331611 chr3L 2331669 2331688 5 76 1.5 2.5 2.0 1.7 90 chr3L 2331598 intron MsR1 + chr3L 2331643 intron MsR1 + chr3L 2331688 intron MsR1 + chr3L_5_2330001 chr3L_2330001 RAL-859 750 chr3L 2447512 2447535 chr3L 2456667 2456691 roo 7 9155 2.5 4.5 3.5 1.6 9179 chr3L 2447512 intron CG45186 + chr3L 2452102 intron CG45186 + chr3L 2456691 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-859 751 chr3L 2493844 2493847 chr3L 2493932 2493935 4 88 1.5 3.5 2.5 1.1 91 chr3L 2493844 intron CG45186 + chr3L 2493890 intron CG45186 + chr3L 2493935 intron CG45186 + chr3L_4_2490001 chr3L_2490001 RAL-859 752 chr3L 2515402 2515430 chr3L 2515484 2515512 6 82 2.0 3.0 2.5 1.7 110 chr3L 2515402 intron Spn - chr3L 2515457 intron Spn - chr3L 2515512 intron Spn - chr3L_6_2515001 chr3L_2515001 RAL-859 753 chr3L 2533648 2533680 chr3L 2533730 2533761 6 81 4.0 2.5 3.2 1.4 113 chr3L 2533648 intron Spn - chr3L 2533704 intron Spn - chr3L 2533761 intron Spn - chr3L_6_2530001 chr3L_2530001 RAL-859 754 chr3L 2561529 2561560 chr3L 2561606 2561636 7 77 2.0 3.0 2.5 2.0 107 chr3L 2561529 intron msn - chr3L 2561582 intron msn - chr3L 2561636 intron msn - chr3L_7_2560001 chr3L_2560001 RAL-859 755 chr3L 2581901 2581908 chr3L 2581995 2582002 4 94 4.0 1.5 2.8 1.1 101 chr3L 2581901 intron msn - chr3L 2581952 intron msn - chr3L 2582002 intron msn - chr3L_4_2580001 chr3L_2580001 RAL-859 756 chr3L 2707926 2707961 chr3L 2708013 2708048 17 87 2.0 2.0 2.0 5.7 122 chr3L 2707926 intron Fife - chr3L 2707987 intron Fife - chr3L 2708048 intron Fife - chr3L_17_2705001 chr3L_2705001 RAL-859 757 chr3L 2927839 2927870 chr3L 2936116 2936147 Tirant 8 8276 2.5 0.5 1.5 3.2 8308 chr3L 2927839 intron Shab + chr3L 2931993 intron Shab + chr3L 2936147 intron Shab + chr3L_8_2930001 chr3L_2930001 RAL-859 758 chr3L 3027607 3027630 chr3L 3028608 3028631 8 1001 1.5 2.5 2.0 2.7 1024 chr3L 3027607 intergenic not near genes chr3L 3028119 intergenic not near genes chr3L 3028631 intergenic not near genes chr3L_8_3025001 chr3L_3025001 RAL-859 759 chr3L 3040323 3040335 chr3L 3042112 3042124 S-element 4 1789 4.0 1.0 2.5 1.1 1801 chr3L 3040323 3` UTR CG2162 + chr3L 3041224 intergenic not near genes chr3L 3042124 intergenic Jafrac2 + chr3L_4_3040001 chr3L_3040001 RAL-859 760 chr3L 3061284 3061316 chr3L 3069866 3069899 Tirant 10 8583 2.0 1.5 1.8 3.6 8615 chr3L 3061284 intron CG32486 - chr3L 3065592 intron CG32486 - chr3L 3069899 intron CG32486 - chr3L_10_3065001 chr3L_3065001 RAL-859 761 chr3L 3075916 3075950 chr3L 3075989 3076026 8 76 2.5 4.0 3.2 1.9 110 chr3L 3075916 intron CG11486 + chr3L 3075971 intron CG11486 + chr3L 3076026 intron CG11486 + chr3L_8_3075001 chr3L_3075001 RAL-859 762 chr3L 3246886 3246901 chr3L 3246975 3246990 6 89 0.0 3.0 1.5 2.4 104 chr3L 3246886 intergenic not near genes chr3L 3246938 intergenic not near genes chr3L 3246990 intergenic not near genes chr3L_6_3245001 chr3L_3245001 RAL-859 763 chr3L 3252347 3252364 chr3L 3252423 3252440 5 76 0.0 0.0 0.0 5.0 93 chr3L 3252347 5` UTR CR43626 + chr3L 3252394 5` UTR CR43626 + chr3L 3252440 5` UTR CR43626 + chr3L_5_3250001 chr3L_3250001 RAL-859 764 chr3L 3281439 3281473 chr3L 3281935 3281966 Doc 20 495 4.0 8.0 6.0 2.9 527 chr3L 3281439 intron CG12017 + chr3L 3281702 intron CG12017 + chr3L 3281966 intron CG12017 + chr3L_20_3280001 chr3L_3280001 RAL-859 765 chr3L 3436303 3436312 chr3L 3436382 3436391 4 79 1.5 5.0 3.2 1.0 88 chr3L 3436303 intron eIF5B - chr3L 3436347 intron eIF5B - chr3L 3436391 intron eIF5B - chr3L_4_3435001 chr3L_3435001 RAL-859 766 chr3L 3470156 3470189 chr3L 3470232 3470265 5 76 0.0 0.5 0.2 4.2 109 chr3L 3470156 intron CG14971 - chr3L 3470210 intron CG14971 - chr3L 3470265 intron CG14971 - chr3L_5_3470001 chr3L_3470001 RAL-859 767 chr3L 3475072 3475101 chr3L 3475516 3475545 jockey 10 444 1.5 1.5 1.5 4.0 473 chr3L 3475072 intron CG42324 + chr3L 3475308 intron CG42324 + chr3L 3475545 intron CG42324 + chr3L_10_3475001 chr3L_3475001 RAL-859 768 chr3L 3484374 3484405 chr3L 3484550 3484581 8 176 0.0 0.5 0.2 6.7 207 chr3L 3484374 intron,exon CG42324 +,CG43074 - chr3L 3484478 intron,exon CG42324 +,CG43074 - chr3L 3484581 intron,exon CG42324 +,CG43074 - chr3L_8_3480001 chr3L_3480001 RAL-859 769 chr3L 3601299 3601326 chr3L 3606610 3606636 copia 7 5311 1.5 3.0 2.2 2.2 5337 chr3L 3601299 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606636 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-859 770 chr3L 3627235 3627259 chr3L 3627340 3627364 4 105 0.5 3.0 1.8 1.4 129 chr3L 3627235 intron dar1 + chr3L 3627300 intron dar1 + chr3L 3627364 intron dar1 + chr3L_4_3625001 chr3L_3625001 RAL-859 771 chr3L 3783270 3783285 chr3L 3783347 3783362 4 77 0.5 0.5 0.5 2.7 92 chr3L 3783270 intron CG32264 - chr3L 3783316 intron CG32264 - chr3L 3783362 intron CG32264 - chr3L_4_3780001 chr3L_3780001 RAL-859 772 chr3L 3890975 3890988 chr3L 3891056 3891068 5 81 1.5 0.0 0.8 2.8 93 chr3L 3890975 intergenic not near genes chr3L 3891022 intergenic not near genes chr3L 3891068 intergenic not near genes chr3L_5_3890001 chr3L_3890001 RAL-859 773 chr3L 3921395 3921423 chr3L 3921656 3921683 6 263 1.5 4.0 2.8 1.6 288 chr3L 3921395 intron Eip63F-1 - chr3L 3921539 intron Eip63F-1 - chr3L 3921683 intron Eip63F-1 - chr3L_6_3920001 chr3L_3920001 RAL-859 774 chr3L 4032862 4032887 chr3L 4032953 4032978 11 91 4.5 2.0 3.2 2.6 116 chr3L 4032862 exon,5` UTR Gr64d +,Gr64e + chr3L 4032920 exon,5` UTR Gr64d +,Gr64e + chr3L 4032978 exon,5` UTR Gr64d +,Gr64e + chr3L_11_4030001 chr3L_4030001 RAL-859 775 chr3L 4146818 4146836 chr3L 4146900 4146918 5 82 0.0 1.5 0.8 2.8 100 chr3L 4146818 intergenic not near genes chr3L 4146868 intergenic not near genes chr3L 4146918 intergenic not near genes chr3L_5_4145001 chr3L_4145001 RAL-859 776 chr3L 4195139 4195170 chr3L 4195243 4195274 6 104 3.0 3.0 3.0 1.5 135 chr3L 4195139 exon CG43367 + chr3L 4195206 intron CG43367 + chr3L 4195274 intron CG43367 + chr3L_6_4195001 chr3L_4195001 RAL-859 777 chr3L 4858313 4858327 chr3L 4858394 4858416 8 89 3.0 5.0 4.0 1.6 103 chr3L 4858313 intergenic not near genes chr3L 4858364 intergenic not near genes chr3L 4858416 intergenic not near genes chr3L_8_4855001 chr3L_4855001 RAL-859 778 chr3L 4901128 4901160 chr3L 4907318 4907351 diver 6 6190 3.0 2.0 2.5 1.7 6223 chr3L 4901128 intergenic CG13704 + chr3L 4904240 intergenic not near genes chr3L 4907351 intergenic not near genes chr3L_6_4900001 chr3L_4900001 RAL-859 779 chr3L 4926093 4926120 chr3L 4926172 4926199 7 79 2.0 1.5 1.8 2.5 106 chr3L 4926093 intergenic not near genes chr3L 4926146 intergenic not near genes chr3L 4926199 intergenic not near genes chr3L_7_4925001 chr3L_4925001 RAL-859 780 chr3L 4958415 4958446 chr3L 4958503 4958534 8 88 1.0 2.0 1.5 3.2 119 chr3L 4958415 intron Con - chr3L 4958474 intron Con - chr3L 4958534 intron Con - chr3L_8_4955001 chr3L_4955001 RAL-859 781 chr3L 5034162 5034191 chr3L 5043314 5043343 roo 5 9152 1.5 3.5 2.5 1.4 9181 chr3L 5034162 intron Con - chr3L 5038752 intron Con - chr3L 5043343 intron Con - chr3L_5_5035001 chr3L_5035001 RAL-859 782 chr3L 5104485 5104504 chr3L 5124619 5124638 6 20134 2.0 4.0 3.0 1.5 20153 chr3L 5104485 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124638 intergenic not near genes chr3L_6_5110001 chr3L_5110001 RAL-859 783 chr3L 5229043 5229048 chr3L 5229463 5229469 4 421 1.5 1.5 1.5 1.6 426 chr3L 5229043 intron shep - chr3L 5229256 intron shep - chr3L 5229469 intron shep - chr3L_4_5225001 chr3L_5225001 RAL-859 784 chr3L 5427360 5427384 chr3L 5427965 5427989 6 605 1.5 0.5 1.0 3.0 629 chr3L 5427360 intron CG34391 + chr3L 5427674 intron CG34391 + chr3L 5427989 intron CG34391 + chr3L_6_5425001 chr3L_5425001 RAL-859 785 chr3L 5482944 5483094 chr3L 5483152 5483203 6 132 0.0 0.0 0.0 6.0 259 chr3L 5482944 exon CG4835 + chr3L 5483074 exon CG4835 + chr3L 5483203 exon CG4835 + chr3L_6_5480001 chr3L_5480001 RAL-859 786 chr3L 5521504 5521516 chr3L 5521593 5521605 6 89 4.5 2.0 3.2 1.4 101 chr3L 5521504 intron Lkr - chr3L 5521554 intron Lkr - chr3L 5521605 intron Lkr - chr3L_6_5520001 chr3L_5520001 RAL-859 787 chr3L 5537725 5537752 chr3L 5538067 5538094 jockey 6 342 0.5 2.5 1.5 2.4 369 chr3L 5537725 intergenic not near genes chr3L 5537910 intergenic CG10625 - chr3L 5538094 intergenic CG10625 - chr3L_6_5535001 chr3L_5535001 RAL-859 788 chr3L 5726881 5726893 chr3L 5726988 5727000 8 107 2.5 4.5 3.5 1.8 119 chr3L 5726881 intron sif + chr3L 5726940 intron sif + chr3L 5727000 intron sif + chr3L_8_5725001 chr3L_5725001 RAL-859 789 chr3L 5910038 5910061 chr3L 5910279 5910302 pogo 4 241 3.0 4.5 3.8 0.8 264 chr3L 5910038 intron CG13288 + chr3L 5910170 intron CG13288 + chr3L 5910302 intron CG13288 + chr3L_4_5910001 chr3L_5910001 RAL-859 790 chr3L 5926317 5926346 chr3L 5926507 5926536 BS 10 190 4.0 4.0 4.0 2.0 219 chr3L 5926317 intron Vap-33B + chr3L 5926426 intron Vap-33B + chr3L 5926536 intron Vap-33B + chr3L_10_5925001 chr3L_5925001 RAL-859 791 chr3L 5940079 5940113 chr3L 5940171 5940205 15 91 3.0 1.5 2.2 4.7 126 chr3L 5940079 intron CG33993 - chr3L 5940142 intron CG33993 - chr3L 5940205 intron CG33993 - chr3L_15_5940001 chr3L_5940001 RAL-859 792 chr3L 6001684 6001714 chr3L 6004384 6004414 jockey 5 2700 0.5 1.5 1.0 2.5 2730 chr3L 6001684 intron PVRAP + chr3L 6003049 intron PVRAP + chr3L 6004414 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-859 793 chr3L 6040368 6040391 chr3L 6042724 6042747 Doc 6 2356 2.0 1.5 1.8 2.1 2379 chr3L 6040368 intergenic Jon65Aiv + chr3L 6041558 intergenic not near genes chr3L 6042747 intergenic not near genes chr3L_6_6040001 chr3L_6040001 RAL-859 794 chr3L 6052144 6052148 chr3L 6052228 6052234 4 85 0.0 2.0 1.0 2.0 90 chr3L 6052144 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052189 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052234 intergenic Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-859 795 chr3L 6052648 6052667 chr3L 6052722 6052752 5 82 3.0 2.0 2.5 1.4 104 chr3L 6052648 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052752 exon Jon65Aii + chr3L_5_6050001 chr3L_6050001 RAL-859 796 chr3L 6388850 6388853 chr3L 6388944 6388948 4 95 3.5 2.0 2.8 1.1 98 chr3L 6388850 intergenic not near genes chr3L 6388899 intergenic not near genes chr3L 6388948 intergenic not near genes chr3L_4_6385001 chr3L_6385001 RAL-859 797 chr3L 6405661 6405689 chr3L 6432125 6432153 roo 10 26464 1.0 2.0 1.5 4.0 26492 chr3L 6405661 intron CG42747 + chr3L 6418907 intron CG42747 + chr3L 6432153 intron CG42747 + chr3L_10_6415001 chr3L_6415001 RAL-859 798 chr3L 6562836 6562866 chr3L 6562916 6562946 5 80 1.0 0.5 0.8 2.8 110 chr3L 6562836 intron CG18769 + chr3L 6562891 intron CG18769 + chr3L 6562946 intron CG18769 + chr3L_5_6560001 chr3L_6560001 RAL-859 799 chr3L 6652090 6652110 chr3L 6652168 6652188 5 78 3.5 3.5 3.5 1.1 98 chr3L 6652090 intergenic not near genes chr3L 6652139 intergenic not near genes chr3L 6652188 intergenic not near genes chr3L_5_6650001 chr3L_6650001 RAL-859 800 chr3L 6657441 6657475 chr3L 6657593 6657627 14 152 1.5 2.0 1.8 5.0 186 chr3L 6657441 intergenic not near genes chr3L 6657534 intergenic not near genes chr3L 6657627 intergenic not near genes chr3L_14_6655001 chr3L_6655001 RAL-859 801 chr3L 6781127 6781138 chr3L 6783140 6783151 Doc 6 2013 3.0 0.0 1.5 2.4 2024 chr3L 6781127 intergenic not near genes chr3L 6782139 intergenic not near genes chr3L 6783151 intergenic not near genes chr3L_6_6780001 chr3L_6780001 RAL-859 802 chr3L 6868731 6868741 chr3L 6868809 6868819 5 78 1.0 3.0 2.0 1.7 88 chr3L 6868731 intergenic not near genes chr3L 6868775 intergenic not near genes chr3L 6868819 intergenic not near genes chr3L_5_6865001 chr3L_6865001 RAL-859 803 chr3L 6887515 6887545 chr3L 6895007 6895037 roo 10 7492 4.5 0.5 2.5 2.9 7522 chr3L 6887515 intergenic not near genes chr3L 6891276 intergenic not near genes chr3L 6895037 intergenic not near genes chr3L_10_6890001 chr3L_6890001 RAL-859 804 chr3L 7022022 7022052 chr3L 7022230 7022260 7 208 0.0 2.0 1.0 3.5 238 chr3L 7022022 intron Mp + chr3L 7022141 intron Mp + chr3L 7022260 intron Mp + chr3L_7_7020001 chr3L_7020001 RAL-859 805 chr3L 7033172 7033201 chr3L 7033251 7033281 9 80 1.0 2.5 1.8 3.2 109 chr3L 7033172 intron Mp + chr3L 7033226 intron Mp + chr3L 7033281 intron Mp + chr3L_9_7030001 chr3L_7030001 RAL-859 806 chr3L 7112590 7112611 chr3L 7112677 7112698 4 87 2.0 3.0 2.5 1.1 108 chr3L 7112590 intron form3 + chr3L 7112644 intron form3 + chr3L 7112698 intron form3 + chr3L_4_7110001 chr3L_7110001 RAL-859 807 chr3L 7150894 7150902 chr3L 7150970 7150978 4 76 0.0 3.0 1.5 1.6 84 chr3L 7150894 intron corn - chr3L 7150936 intron corn - chr3L 7150978 intron corn - chr3L_4_7150001 chr3L_7150001 RAL-859 808 chr3L 7175040 7175060 chr3L 7175270 7175290 10 230 1.0 3.5 2.2 3.1 250 chr3L 7175040 intron Dscam2 - chr3L 7175165 intron Dscam2 - chr3L 7175290 intron Dscam2 - chr3L_10_7175001 chr3L_7175001 RAL-859 809 chr3L 7244932 7244957 chr3L 7245024 7245049 12 92 1.5 2.0 1.8 4.3 117 chr3L 7244932 exon mei-P22 + chr3L 7244990 exon mei-P22 + chr3L 7245049 exon mei-P22 + chr3L_12_7240001 chr3L_7240001 RAL-859 810 chr3L 7285332 7285354 chr3L 7285443 7285466 7 112 2.0 0.0 1.0 3.5 134 chr3L 7285332 intron unc-13-4A - chr3L 7285399 intron unc-13-4A - chr3L 7285466 intron unc-13-4A - chr3L_7_7285001 chr3L_7285001 RAL-859 811 chr3L 7310267 7310300 chr3L 7310353 7310386 9 86 0.0 2.0 1.0 4.5 119 chr3L 7310267 intron unc-13-4A - chr3L 7310326 intron unc-13-4A - chr3L 7310386 intron unc-13-4A - chr3L_9_7310001 chr3L_7310001 RAL-859 812 chr3L 7358294 7358326 chr3L 7359578 7359610 8 1284 11.0 18.5 14.8 0.5 1316 chr3L 7358294 exon pst - chr3L 7358952 exon pst - chr3L 7359610 intron pst - chr3L_8_7355001 chr3L_7355001 RAL-859 813 chr3L 7377330 7377339 chr3L 7380435 7380444 297 4 3105 1.0 1.5 1.2 1.8 3114 chr3L 7377330 intron SMSr - chr3L 7378887 intron SMSr - chr3L 7380444 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-859 814 chr3L 7408218 7408242 chr3L 7408300 7408325 5 83 1.0 2.0 1.5 2.0 107 chr3L 7408218 intergenic CR44525 - chr3L 7408272 intergenic CR44525 - chr3L 7408325 intergenic CR44525 - chr3L_5_7405001 chr3L_7405001 RAL-859 815 chr3L 7462951 7462954 chr3L 7463059 7463062 4 108 0.0 2.0 1.0 2.0 111 chr3L 7462951 intergenic not near genes chr3L 7463006 intergenic not near genes chr3L 7463062 intergenic not near genes chr3L_4_7460001 chr3L_7460001 RAL-859 816 chr3L 7488866 7488878 chr3L 7488947 7488959 4 81 0.5 1.5 1.0 2.0 93 chr3L 7488866 intergenic not near genes chr3L 7488912 intergenic not near genes chr3L 7488959 intergenic not near genes chr3L_4_7485001 chr3L_7485001 RAL-859 817 chr3L 7560354 7560378 chr3L 7560593 7560617 8 239 2.5 4.5 3.5 1.8 263 chr3L 7560354 intergenic CG14837 - chr3L 7560486 intergenic CG14837 - chr3L 7560617 intergenic not near genes chr3L_8_7560001 chr3L_7560001 RAL-859 818 chr3L 7576211 7576237 chr3L 7576298 7576325 7 88 2.0 1.5 1.8 2.5 114 chr3L 7576211 intergenic not near genes chr3L 7576268 intergenic not near genes chr3L 7576325 intergenic not near genes chr3L_7_7575001 chr3L_7575001 RAL-859 819 chr3L 7581623 7581655 chr3L 7581707 7581739 9 83 1.5 1.5 1.5 3.6 116 chr3L 7581623 intergenic not near genes chr3L 7581681 intergenic not near genes chr3L 7581739 intergenic not near genes chr3L_9_7580001 chr3L_7580001 RAL-859 820 chr3L 7707527 7707531 chr3L 7707610 7707614 4 83 4.0 3.0 3.5 0.9 87 chr3L 7707527 intron,intron CG32373 +,Ank2 - chr3L 7707570 intron,intron CG32373 +,Ank2 - chr3L 7707614 intron,intron CG32373 +,Ank2 - chr3L_4_7705001 chr3L_7705001 RAL-859 821 chr3L 7749470 7749471 chr3L 11777678 11777678 5 4028208 9.5 6.0 7.8 0.6 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9760001 chr3L_9760001 RAL-859 822 chr3L 7793716 7793732 chr3L 7800768 7800784 297 6 7052 4.0 2.0 3.0 1.5 7068 chr3L 7793716 intron CG32369 - chr3L 7797250 intron CG32369 - chr3L 7800784 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-859 823 chr3L 7869665 7869674 chr3L 7869745 7869754 5 80 1.5 3.5 2.5 1.4 89 chr3L 7869665 exon CG32365 + chr3L 7869710 exon CG32365 + chr3L 7869754 exon CG32365 + chr3L_5_7865001 chr3L_7865001 RAL-859 824 chr3L 7886529 7886544 chr3L 7889047 7889062 Stalker4 6 2518 0.0 4.5 2.2 1.9 2533 chr3L 7886529 intron CG32365 + chr3L 7887796 intron CG32365 + chr3L 7889062 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-859 825 chr3L 7985367 7985387 chr3L 7987695 7987715 NOF 8 2328 6.0 4.5 5.2 1.3 2348 chr3L 7985367 intron nmo + chr3L 7986541 intron nmo + chr3L 7987715 intron nmo + chr3L_8_7985001 chr3L_7985001 RAL-859 826 chr3L 8076681 8076709 chr3L 8076763 8076792 10 83 2.0 1.5 1.8 3.6 111 chr3L 8076681 intron Ect4 + chr3L 8076736 intron Ect4 + chr3L 8076792 intron Ect4 + chr3L_10_8075001 chr3L_8075001 RAL-859 827 chr3L 8165973 8165994 chr3L 8166057 8166078 4 84 1.0 1.5 1.2 1.8 105 chr3L 8165973 intergenic CG13675 - chr3L 8166026 intergenic not near genes chr3L 8166078 intergenic not near genes chr3L_4_8165001 chr3L_8165001 RAL-859 828 chr3L 8295792 8295813 chr3L 8295950 8295971 5 158 2.0 3.5 2.8 1.3 179 chr3L 8295792 intergenic CG7201 - chr3L 8295882 intergenic not near genes chr3L 8295971 intergenic not near genes chr3L_5_8295001 chr3L_8295001 RAL-859 829 chr3L 8317591 8317596 chr3L 22908066 22908066 4 14590471 0.0 11.0 5.5 0.6 14590475 chr3L 8317591 intergenic not near genes chr3L 15612828 5` UTR CG13449 - chr3L 22908066 intergenic not near genes chr3L_4_15610001 chr3L_15610001 RAL-859 830 chr3L 8481784 8481806 chr3L 8490939 8490965 roo 8 9158 1.0 2.5 1.8 2.9 9181 chr3L 8481784 intron CG43163 - chr3L 8486374 intron CG43163 - chr3L 8490965 intron CG43163 - chr3L_8_8485001 chr3L_8485001 RAL-859 831 chr3L 8498296 8498327 chr3L 8505763 8505794 blood 4 7467 4.0 2.0 3.0 1.0 7498 chr3L 8498296 intron CG43163 - chr3L 8502045 intron CG43163 - chr3L 8505794 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-859 832 chr3L 8791278 8791292 chr3L 8796698 8796712 I-element 4 5420 3.5 0.0 1.8 1.4 5434 chr3L 8791278 exon Fhos + chr3L 8793995 intron Fhos + chr3L 8796712 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-859 833 chr3L 8826778 8826793 chr3L 8826895 8826911 5 118 2.5 2.0 2.2 1.6 133 chr3L 8826778 intergenic not near genes chr3L 8826844 intergenic not near genes chr3L 8826911 intergenic not near genes chr3L_5_8825001 chr3L_8825001 RAL-859 834 chr3L 9013691 9013691 chr3L 18417066 18417066 5 9403375 14.5 15.0 14.8 0.3 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-859 835 chr3L 9024502 9024529 chr3L 9024582 9024609 6 80 1.0 0.5 0.8 3.3 107 chr3L 9024502 intergenic not near genes chr3L 9024556 intergenic not near genes chr3L 9024609 intergenic not near genes chr3L_6_9020001 chr3L_9020001 RAL-859 836 chr3L 9076926 9076956 chr3L 9084486 9084516 412 6 7560 2.5 3.5 3.0 1.5 7590 chr3L 9076926 exon Tequila + chr3L 9080721 intron Tequila + chr3L 9084516 exon Tequila + chr3L_6_9080001 chr3L_9080001 RAL-859 837 chr3L 9130559 9130582 chr3L 9134318 9134343 412 8 3760 4.0 2.0 3.0 2.0 3784 chr3L 9130559 intergenic bol - chr3L 9132451 intergenic not near genes chr3L 9134343 intergenic Dhpr + chr3L_8_9130001 chr3L_9130001 RAL-859 838 chr3L 9164697 9164730 chr3L 9166161 9166197 hobo 7 1466 0.0 1.5 0.8 3.9 1500 chr3L 9164697 intron Rdl - chr3L 9165447 intron Rdl - chr3L 9166197 intron Rdl - chr3L_7_9165001 chr3L_9165001 RAL-859 839 chr3L 9219245 9219263 chr3L 9219917 9219934 jockey 7 671 6.5 4.0 5.2 1.1 689 chr3L 9219245 intergenic not near genes chr3L 9219590 intergenic not near genes chr3L 9219934 intergenic not near genes chr3L_7_9215001 chr3L_9215001 RAL-859 840 chr3L 9279905 9279928 chr3L 9279988 9280012 5 84 0.5 1.0 0.8 2.8 107 chr3L 9279905 intron GluRIB + chr3L 9279958 intron GluRIB + chr3L 9280012 intron GluRIB + chr3L_5_9275001 chr3L_9275001 RAL-859 841 chr3L 9403642 9403674 chr3L 9403737 9403769 13 95 2.5 2.5 2.5 3.7 127 chr3L 9403642 intergenic not near genes chr3L 9403706 intergenic not near genes chr3L 9403769 intergenic not near genes chr3L_13_9400001 chr3L_9400001 RAL-859 842 chr3L 9502610 9502624 chr3L 9502695 9502705 4 84 3.0 1.0 2.0 1.3 95 chr3L 9502610 intron path - chr3L 9502658 intron path - chr3L 9502705 intron path - chr3L_4_9500001 chr3L_9500001 RAL-859 843 chr3L 9510947 9510954 chr3L 9511025 9511033 5 79 0.0 10.5 5.2 0.8 86 chr3L 9510947 intron RpS9 - chr3L 9510990 intron RpS9 - chr3L 9511033 intron RpS9 - chr3L_5_9510001 chr3L_9510001 RAL-859 844 chr3L 9571901 9571923 chr3L 9572249 9572271 jockey 7 348 3.0 1.0 2.0 2.3 370 chr3L 9571901 intron CG42673 + chr3L 9572086 intron CG42673 + chr3L 9572271 intron CG42673 + chr3L_7_9570001 chr3L_9570001 RAL-859 845 chr3L 9575907 9575941 chr3L 9580985 9581016 jockey 11 5078 3.0 2.0 2.5 3.1 5109 chr3L 9575907 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581016 intron CG42673 + chr3L_11_9575001 chr3L_9575001 RAL-859 846 chr3L 9637863 9637886 chr3L 9637945 9637968 6 82 3.5 5.0 4.2 1.2 105 chr3L 9637863 intron fry - chr3L 9637916 intron fry - chr3L 9637968 intron fry - chr3L_6_9635001 chr3L_9635001 RAL-859 847 chr3L 9639034 9639055 chr3L 9639119 9639140 5 85 0.0 1.5 0.8 2.8 106 chr3L 9639034 intron fry - chr3L 9639087 intron fry - chr3L 9639140 intron fry - chr3L_5_9635001 chr3L_9635001 RAL-859 848 chr3L 9775389 9775396 chr3L 9775749 9775756 5 360 0.0 5.5 2.8 1.3 367 chr3L 9775389 intron CG8177 + chr3L 9775572 intron CG8177 + chr3L 9775756 intron CG8177 + chr3L_5_9775001 chr3L_9775001 RAL-859 849 chr3L 9795319 9795345 chr3L 9795406 9795432 5 87 2.5 1.0 1.8 1.8 113 chr3L 9795319 intron Zasp67 - chr3L 9795376 intron Zasp67 - chr3L 9795432 intron Zasp67 - chr3L_5_9795001 chr3L_9795001 RAL-859 850 chr3L 9848514 9848542 chr3L 9848590 9848618 4 76 1.5 0.0 0.8 2.2 104 chr3L 9848514 intron RasGAP1 - chr3L 9848566 intron RasGAP1 - chr3L 9848618 intron RasGAP1 - chr3L_4_9845001 chr3L_9845001 RAL-859 851 chr3L 9907882 9907894 chr3L 9907958 9907971 4 77 6.5 2.0 4.2 0.8 89 chr3L 9907882 intergenic CG34356 + chr3L 9907926 intergenic CG34356 + chr3L 9907971 intergenic CG34356 + chr3L_4_9905001 chr3L_9905001 RAL-859 852 chr3L 9918880 9918906 chr3L 9918975 9919001 5 95 2.5 1.5 2.0 1.7 121 chr3L 9918880 intron CG34356 + chr3L 9918940 intron CG34356 + chr3L 9919001 intron CG34356 + chr3L_5_9915001 chr3L_9915001 RAL-859 853 chr3L 9951195 9951222 chr3L 9951282 9951309 6 87 1.0 3.5 2.2 1.9 114 chr3L 9951195 intron CG34356 + chr3L 9951252 intron CG34356 + chr3L 9951309 intron CG34356 + chr3L_6_9950001 chr3L_9950001 RAL-859 854 chr3L 10003159 10003179 chr3L 10003256 10003276 8 97 1.5 1.0 1.2 3.6 117 chr3L 10003159 intron dpr6 + chr3L 10003218 intron dpr6 + chr3L 10003276 intron dpr6 + chr3L_8_10000001 chr3L_10000001 RAL-859 855 chr3L 10011590 10011621 chr3L 10011672 10011703 11 82 3.0 2.0 2.5 3.1 113 chr3L 10011590 intron dpr6 + chr3L 10011646 intron dpr6 + chr3L 10011703 intron dpr6 + chr3L_11_10010001 chr3L_10010001 RAL-859 856 chr3L 10041010 10041039 chr3L 10041081 10041116 10 76 3.0 2.0 2.5 2.9 106 chr3L 10041010 exon dpr6 + chr3L 10041063 intron dpr6 + chr3L 10041116 intron dpr6 + chr3L_10_10040001 chr3L_10040001 RAL-859 857 chr3L 10095549 10095560 chr3L 10095745 10095756 4 196 2.5 0.0 1.2 1.8 207 chr3L 10095549 intron dpr6 + chr3L 10095652 intron dpr6 + chr3L 10095756 intron,3` UTR dpr6 +,CG42825 - chr3L_4_10095001 chr3L_10095001 RAL-859 858 chr3L 10191284 10191315 chr3L 10191395 10191426 13 111 2.0 2.0 2.0 4.3 142 chr3L 10191284 intron ect - chr3L 10191355 intron ect - chr3L 10191426 intron ect - chr3L_13_10190001 chr3L_10190001 RAL-859 859 chr3L 10219237 10219258 chr3L 10219334 10219355 9 97 3.0 1.5 2.2 2.8 118 chr3L 10219237 exon CG32055 - chr3L 10219296 exon CG32055 - chr3L 10219355 exon CG32055 - chr3L_9_10215001 chr3L_10215001 RAL-859 860 chr3L 10298674 10298696 chr3L 10298761 10298783 4 87 0.0 1.0 0.5 2.7 109 chr3L 10298674 intergenic not near genes chr3L 10298728 intergenic not near genes chr3L 10298783 intergenic not near genes chr3L_4_10295001 chr3L_10295001 RAL-859 861 chr3L 10308739 10308772 chr3L 10308816 10308849 9 77 3.0 2.0 2.5 2.6 110 chr3L 10308739 intergenic not near genes chr3L 10308794 intergenic not near genes chr3L 10308849 intergenic not near genes chr3L_9_10305001 chr3L_10305001 RAL-859 862 chr3L 10310355 10310378 chr3L 10310452 10310475 4 97 4.0 2.5 3.2 1.0 120 chr3L 10310355 intergenic not near genes chr3L 10310415 intergenic not near genes chr3L 10310475 intergenic not near genes chr3L_4_10310001 chr3L_10310001 RAL-859 863 chr3L 10357789 10357816 chr3L 10357870 10357901 5 84 1.0 2.0 1.5 2.0 112 chr3L 10357789 intron CR44327 + chr3L 10357845 intron CR44327 + chr3L 10357901 intron CR44327 + chr3L_5_10355001 chr3L_10355001 RAL-859 864 chr3L 10414938 10414974 chr3L 10417310 10417346 Doc 7 2372 1.0 2.5 1.8 2.5 2408 chr3L 10414938 intergenic CG12362 + chr3L 10416142 intergenic not near genes chr3L 10417346 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-859 865 chr3L 10417579 10417603 chr3L 10417656 10417680 7 77 2.5 4.0 3.2 1.7 101 chr3L 10417579 intergenic not near genes chr3L 10417630 intergenic not near genes chr3L 10417680 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-859 866 chr3L 10450702 10450709 chr3L 10450782 10450789 4 80 0.0 2.5 1.2 1.8 87 chr3L 10450702 intergenic not near genes chr3L 10450746 intergenic not near genes chr3L 10450789 intergenic not near genes chr3L_4_10450001 chr3L_10450001 RAL-859 867 chr3L 10470251 10470276 chr3L 10470335 10470360 7 85 1.5 3.0 2.2 2.2 109 chr3L 10470251 intergenic not near genes chr3L 10470306 intergenic not near genes chr3L 10470360 intergenic not near genes chr3L_7_10470001 chr3L_10470001 RAL-859 868 chr3L 10502050 10502074 chr3L 10502146 10502170 6 96 1.0 1.0 1.0 3.0 120 chr3L 10502050 intron A2bp1 + chr3L 10502110 intron A2bp1 + chr3L 10502170 intron A2bp1 + chr3L_6_10500001 chr3L_10500001 RAL-859 869 chr3L 10509485 10509514 chr3L 10509613 10509641 6 128 1.5 1.0 1.2 2.7 156 chr3L 10509485 intron A2bp1 + chr3L 10509563 intron A2bp1 + chr3L 10509641 intron A2bp1 + chr3L_6_10505001 chr3L_10505001 RAL-859 870 chr3L 10610214 10610235 chr3L 10610291 10610312 4 77 2.5 3.5 3.0 1.0 98 chr3L 10610214 intergenic not near genes chr3L 10610263 intergenic not near genes chr3L 10610312 intergenic not near genes chr3L_4_10610001 chr3L_10610001 RAL-859 871 chr3L 10611306 10611335 chr3L 10611381 10611411 5 76 2.5 1.0 1.8 1.8 105 chr3L 10611306 intergenic not near genes chr3L 10611358 intergenic not near genes chr3L 10611411 intergenic not near genes chr3L_5_10610001 chr3L_10610001 RAL-859 872 chr3L 10628363 10628398 chr3L 10628522 10628555 7 159 2.0 3.5 2.8 1.8 192 chr3L 10628363 exon CG14151 - chr3L 10628459 5` UTR CG14151 - chr3L 10628555 intergenic CG14151 - chr3L_7_10625001 chr3L_10625001 RAL-859 873 chr3L 10653345 10653359 chr3L 10653430 10653444 5 85 1.5 1.5 1.5 2.0 99 chr3L 10653345 intron CG32066 - chr3L 10653394 intron CG32066 - chr3L 10653444 intron CG32066 - chr3L_5_10650001 chr3L_10650001 RAL-859 874 chr3L 10654128 10654151 chr3L 10654213 10654238 7 86 3.0 0.0 1.5 2.8 110 chr3L 10654128 intron CG32066 - chr3L 10654183 intron CG32066 - chr3L 10654238 intron CG32066 - chr3L_7_10650001 chr3L_10650001 RAL-859 875 chr3L 10658076 10658210 chr3L 10658153 10658337 5 106 0.5 0.5 0.5 3.3 261 chr3L 10658076 intron CG32066 - chr3L 10658206 intron CG32066 - chr3L 10658337 intron CG32066 - chr3L_5_10655001 chr3L_10655001 RAL-859 876 chr3L 10778819 10778834 chr3L 10778895 10778910 4 76 0.0 4.0 2.0 1.3 91 chr3L 10778819 intergenic not near genes chr3L 10778864 intergenic not near genes chr3L 10778910 intergenic not near genes chr3L_4_10775001 chr3L_10775001 RAL-859 877 chr3L 10889235 10889261 chr3L 10889313 10889341 9 79 1.0 4.0 2.5 2.6 106 chr3L 10889235 intergenic not near genes chr3L 10889288 intergenic not near genes chr3L 10889341 intergenic not near genes chr3L_9_10885001 chr3L_10885001 RAL-859 878 chr3L 10914321 10914331 chr3L 10914402 10914412 5 81 0.0 0.0 0.0 5.0 91 chr3L 10914321 intergenic not near genes chr3L 10914366 intergenic not near genes chr3L 10914412 intergenic not near genes chr3L_5_10910001 chr3L_10910001 RAL-859 879 chr3L 10956456 10956465 chr3L 10956574 10956583 4 118 3.0 4.0 3.5 0.9 127 chr3L 10956456 intergenic not near genes chr3L 10956520 intergenic not near genes chr3L 10956583 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-859 880 chr3L 10957009 10957033 chr3L 10957085 10957108 12 76 2.0 1.5 1.8 4.3 99 chr3L 10957009 intergenic not near genes chr3L 10957058 intergenic not near genes chr3L 10957108 intergenic not near genes chr3L_12_10955001 chr3L_10955001 RAL-859 881 chr3L 10958217 10958232 chr3L 10958299 10958313 4 82 1.5 0.5 1.0 2.0 96 chr3L 10958217 intergenic not near genes chr3L 10958265 intergenic not near genes chr3L 10958313 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-859 882 chr3L 11087064 11087089 chr3L 11088851 11088878 S-element 7 1789 1.0 2.0 1.5 2.8 1814 chr3L 11087064 intron JIL-1 - chr3L 11087971 intron JIL-1 - chr3L 11088878 intron JIL-1 - chr3L_7_11085001 chr3L_11085001 RAL-859 883 chr3L 11105296 11105328 chr3L 11107007 11107039 X-element 7 1711 1.0 2.5 1.8 2.5 1743 chr3L 11105296 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107039 exon CG32073 - chr3L_7_11105001 chr3L_11105001 RAL-859 884 chr3L 11277460 11277483 chr3L 11278453 11278476 Rt1a 9 994 1.0 5.5 3.2 2.1 1016 chr3L 11277460 intergenic not near genes chr3L 11277968 intergenic not near genes chr3L 11278476 intergenic not near genes chr3L_9_11275001 chr3L_11275001 RAL-859 885 chr3L 11329691 11329723 chr3L 11332896 11332928 jockey 9 3204 2.5 3.0 2.8 2.4 3237 chr3L 11329691 intergenic not near genes chr3L 11331310 intergenic not near genes chr3L 11332928 intergenic not near genes chr3L_9_11330001 chr3L_11330001 RAL-859 886 chr3L 11339647 11339655 chr3L 11339724 11339732 5 77 1.5 1.5 1.5 2.0 85 chr3L 11339647 intergenic not near genes chr3L 11339690 intergenic not near genes chr3L 11339732 intergenic not near genes chr3L_5_11335001 chr3L_11335001 RAL-859 887 chr3L 11383968 11383997 chr3L 11384047 11384075 13 78 3.5 3.5 3.5 2.9 107 chr3L 11383968 3` UTR CR42755 - chr3L 11384022 3` UTR CR42755 - chr3L 11384075 3` UTR CR42755 - chr3L_13_11380001 chr3L_11380001 RAL-859 888 chr3L 11474620 11474659 chr3L 11474709 11474748 7 89 3.5 0.0 1.8 2.5 128 chr3L 11474620 intergenic Vha16-2 + chr3L 11474684 intergenic Vha16-2 + chr3L 11474748 intergenic Vha16-2 + chr3L_7_11470001 chr3L_11470001 RAL-859 889 chr3L 11564790 11564812 chr3L 11572414 11572437 412 4 7625 2.5 5.0 3.8 0.8 7647 chr3L 11564790 exon CG33267 + chr3L 11568614 intron CG33267 + chr3L 11572437 exon CG33267 + chr3L_4_11565001 chr3L_11565001 RAL-859 890 chr3L 11678094 11678123 chr3L 11678181 11678210 5 87 1.5 1.5 1.5 2.0 116 chr3L 11678094 intron CG32085 - chr3L 11678152 intron CG32085 - chr3L 11678210 intron CG32085 - chr3L_5_11675001 chr3L_11675001 RAL-859 891 chr3L 11723084 11723101 chr3L 11727877 11727896 Doc 7 4795 3.5 2.0 2.8 1.8 4812 chr3L 11723084 3` UTR Bmcp + chr3L 11725490 intron Bmcp + chr3L 11727896 3` UTR Bmcp + chr3L_7_11725001 chr3L_11725001 RAL-859 892 chr3L 11729680 11729692 chr3L 11729756 11729768 7 76 5.0 0.5 2.8 1.8 88 chr3L 11729680 exon CG32088 + chr3L 11729724 intron CG32088 + chr3L 11729768 intron CG32088 + chr3L_7_11725001 chr3L_11725001 RAL-859 893 chr3L 11744011 11744035 chr3L 11744119 11744143 9 108 5.5 0.0 2.8 2.4 132 chr3L 11744011 exon CG6024 - chr3L 11744077 intron CG6024 - chr3L 11744143 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-859 894 chr3L 7749470 7749471 chr3L 11777678 11777678 5 4028208 9.5 6.0 7.8 0.6 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_9760001 chr3L_9760001 RAL-859 895 chr3L 11864554 11864577 chr3L 11865849 11865871 pogo 7 1295 1.0 4.5 2.8 1.8 1317 chr3L 11864554 intron CG44837 - chr3L 11865212 intron CG44837 - chr3L 11865871 intron CG44837 - chr3L_7_11865001 chr3L_11865001 RAL-859 896 chr3L 11872244 11872269 chr3L 11872341 11872364 4 96 1.5 2.0 1.8 1.4 120 chr3L 11872244 intron CG44837 - chr3L 11872304 intron CG44837 - chr3L 11872364 intron CG44837 - chr3L_4_11870001 chr3L_11870001 RAL-859 897 chr3L 12013917 12013936 chr3L 12014008 12014027 10 91 2.0 3.0 2.5 2.9 110 chr3L 12013917 intron rols - chr3L 12013972 intron rols - chr3L 12014027 intron rols - chr3L_10_12010001 chr3L_12010001 RAL-859 898 chr3L 12052720 12052733 chr3L 12052809 12052822 8 89 4.0 4.0 4.0 1.6 102 chr3L 12052720 intron rols - chr3L 12052771 intron rols - chr3L 12052822 intron rols - chr3L_8_12050001 chr3L_12050001 RAL-859 899 chr3L 12158775 12158809 chr3L 12160245 12160279 13 1470 46.5 27.0 36.8 0.3 1504 chr3L 12158775 intron CG9760 - chr3L 12159527 exon CG9760 - chr3L 12160279 intron CG9760 - chr3L_13_12155001 chr3L_12155001 RAL-859 900 chr3L 12156439 12156459 chr3L 12160324 12160345 9 3885 9.5 16.5 13.0 0.6 3906 chr3L 12156439 3` UTR Nrx-IV + chr3L 12158392 intron CG9760 - chr3L 12160345 intron CG9760 - chr3L_9_12155001 chr3L_12155001 RAL-859 901 chr3L 12170791 12170823 chr3L 12170873 12170905 7 82 0.5 1.0 0.8 3.9 114 chr3L 12170791 intron Rh7 - chr3L 12170848 intron Rh7 - chr3L 12170905 intron Rh7 - chr3L_7_12170001 chr3L_12170001 RAL-859 902 chr3L 12304092 12304110 chr3L 12304167 12304186 6 75 4.0 5.5 4.8 1.0 94 chr3L 12304092 intergenic not near genes chr3L 12304139 intergenic not near genes chr3L 12304186 intergenic not near genes chr3L_6_12300001 chr3L_12300001 RAL-859 903 chr3L 12326752 12326775 chr3L 12326828 12326851 6 76 4.0 4.0 4.0 1.2 99 chr3L 12326752 intergenic not near genes chr3L 12326802 intergenic not near genes chr3L 12326851 intergenic not near genes chr3L_6_12325001 chr3L_12325001 RAL-859 904 chr3L 12335389 12335414 chr3L 12335467 12335493 10 78 3.5 3.0 3.2 2.4 104 chr3L 12335389 exon CG32105 + chr3L 12335441 3` UTR CG32105 + chr3L 12335493 3` UTR CG32105 + chr3L_10_12335001 chr3L_12335001 RAL-859 905 chr3L 12353922 12353950 chr3L 12354010 12354039 11 88 0.5 1.5 1.0 5.5 117 chr3L 12353922 intergenic not near genes chr3L 12353980 intergenic not near genes chr3L 12354039 intergenic not near genes chr3L_11_12350001 chr3L_12350001 RAL-859 906 chr3L 12622716 12622740 chr3L 12622797 12622821 7 81 2.5 2.5 2.5 2.0 105 chr3L 12622716 intergenic not near genes chr3L 12622768 intergenic not near genes chr3L 12622821 intergenic not near genes chr3L_7_12620001 chr3L_12620001 RAL-859 907 chr3L 12626152 12626159 chr3L 12626261 12626268 4 109 0.5 0.5 0.5 2.7 116 chr3L 12626152 intergenic not near genes chr3L 12626210 intergenic not near genes chr3L 12626268 intergenic not near genes chr3L_4_12625001 chr3L_12625001 RAL-859 908 chr3L 11777676 11777678 chr3L 12638625 12638625 4 860948 5.0 13.0 9.0 0.4 860949 chr3L 11777676 intron,intron Pi3K68D -,CG14131 + chr3L 12208150 intron app - chr3L 12638625 intron CR32111 + chr3L_4_12205001 chr3L_12205001 RAL-859 909 chr3L 12647952 12647976 chr3L 12648027 12648052 4 76 3.0 0.5 1.8 1.4 100 chr3L 12647952 5` UTR CR32111 + chr3L 12648002 5` UTR CR32111 + chr3L 12648052 5` UTR CR32111 + chr3L_4_12645001 chr3L_12645001 RAL-859 910 chr3L 12662030 12662042 chr3L 12662138 12662152 6 109 0.5 1.5 1.0 3.0 122 chr3L 12662030 5` UTR CR44552 + chr3L 12662091 5` UTR CR44552 + chr3L 12662152 5` UTR CR44552 + chr3L_6_12660001 chr3L_12660001 RAL-859 911 chr3L 12874943 12874960 chr3L 12877234 12877252 jockey 4 2292 1.0 1.0 1.0 2.0 2309 chr3L 12874943 intergenic not near genes chr3L 12876098 intergenic not near genes chr3L 12877252 intergenic not near genes chr3L_4_12875001 chr3L_12875001 RAL-859 912 chr3L 12894809 12894824 chr3L 12894887 12894899 4 77 7.5 7.5 7.5 0.5 90 chr3L 12894809 intergenic CG14118 + chr3L 12894854 intergenic CG14118 + chr3L 12894899 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-859 913 chr3L 12919276 12919305 chr3L 12924749 12924778 Rt1c 10 5472 1.5 1.5 1.5 4.0 5502 chr3L 12919276 intergenic not near genes chr3L 12922027 intergenic not near genes chr3L 12924778 intergenic not near genes chr3L_10_12920001 chr3L_12920001 RAL-859 914 chr3L 12978761 12978783 chr3L 12978840 12978862 5 79 2.0 0.0 1.0 2.5 101 chr3L 12978761 intergenic not near genes chr3L 12978812 intergenic not near genes chr3L 12978862 intergenic not near genes chr3L_5_12975001 chr3L_12975001 RAL-859 915 chr3L 13010957 13010992 chr3L 13011086 13011121 11 129 3.5 1.5 2.5 3.1 164 chr3L 13010957 exon CG11261 - chr3L 13011039 exon CG11261 - chr3L 13011121 exon CG11261 - chr3L_11_13010001 chr3L_13010001 RAL-859 916 chr3L 13074046 13074072 chr3L 13074179 13074203 8 132 2.0 2.0 2.0 2.7 157 chr3L 13074046 intergenic not near genes chr3L 13074124 intergenic not near genes chr3L 13074203 intergenic not near genes chr3L_8_13070001 chr3L_13070001 RAL-859 917 chr3L 13128062 13128082 chr3L 13128235 13128253 5 173 3.5 4.5 4.0 1.0 191 chr3L 13128062 intergenic not near genes chr3L 13128158 intergenic not near genes chr3L 13128253 intergenic not near genes chr3L_5_13125001 chr3L_13125001 RAL-859 918 chr3L 13142139 13142160 chr3L 13142224 13142245 6 85 2.0 2.0 2.0 2.0 106 chr3L 13142139 intergenic not near genes chr3L 13142192 intergenic not near genes chr3L 13142245 intergenic not near genes chr3L_6_13140001 chr3L_13140001 RAL-859 919 chr3L 13161774 13161788 chr3L 13161850 13161864 5 76 3.0 3.0 3.0 1.2 90 chr3L 13161774 intergenic not near genes chr3L 13161819 intergenic not near genes chr3L 13161864 intergenic not near genes chr3L_5_13160001 chr3L_13160001 RAL-859 920 chr3L 13223217 13223242 chr3L 13223291 13223318 4 74 0.0 1.5 0.8 2.2 101 chr3L 13223217 intergenic not near genes chr3L 13223268 intergenic not near genes chr3L 13223318 intergenic not near genes chr3L_4_13220001 chr3L_13220001 RAL-859 921 chr3L 13245101 13245119 chr3L 13245232 13245250 5 132 3.5 3.5 3.5 1.1 149 chr3L 13245101 intron caps + chr3L 13245176 intron caps + chr3L 13245250 intron caps + chr3L_5_13245001 chr3L_13245001 RAL-859 922 chr3L 13267288 13267302 chr3L 13267400 13267415 7 113 3.5 0.5 2.0 2.3 127 chr3L 13267288 intron caps + chr3L 13267352 intron caps + chr3L 13267415 intron caps + chr3L_7_13265001 chr3L_13265001 RAL-859 923 chr3L 13311792 13311807 chr3L 13311870 13311885 4 78 1.5 0.5 1.0 2.0 93 chr3L 13311792 intergenic not near genes chr3L 13311838 intergenic not near genes chr3L 13311885 intergenic not near genes chr3L_4_13310001 chr3L_13310001 RAL-859 924 chr3L 13317791 13317822 chr3L 13317881 13317912 7 90 1.5 0.5 1.0 3.5 121 chr3L 13317791 intergenic not near genes chr3L 13317852 intergenic not near genes chr3L 13317912 intergenic not near genes chr3L_7_13315001 chr3L_13315001 RAL-859 925 chr3L 13400527 13400546 chr3L 13400603 13400622 5 76 1.0 1.5 1.2 2.3 95 chr3L 13400527 intron sens - chr3L 13400574 intron sens - chr3L 13400622 intron sens - chr3L_5_13400001 chr3L_13400001 RAL-859 926 chr3L 13432289 13432323 chr3L 13432388 13432422 14 99 0.0 2.0 1.0 7.0 133 chr3L 13432289 intron CG10713 - chr3L 13432356 intron CG10713 - chr3L 13432422 intron CG10713 - chr3L_14_13430001 chr3L_13430001 RAL-859 927 chr3L 13525158 13525182 chr3L 13532954 13532978 roo 6 7796 4.0 1.5 2.8 1.6 7820 chr3L 13525158 intergenic not near genes chr3L 13529068 intergenic not near genes chr3L 13532978 intergenic not near genes chr3L_6_13525001 chr3L_13525001 RAL-859 928 chr3L 13629536 13629549 chr3L 13629647 13629660 5 111 1.5 4.5 3.0 1.2 124 chr3L 13629536 intron bru-3 - chr3L 13629598 intron bru-3 - chr3L 13629660 intron bru-3 - chr3L_5_13625001 chr3L_13625001 RAL-859 929 chr3L 13701556 13701589 chr3L 13701679 13701712 12 123 1.5 0.5 1.0 6.0 156 chr3L 13701556 intron bru-3 - chr3L 13701634 intron bru-3 - chr3L 13701712 intron bru-3 - chr3L_12_13700001 chr3L_13700001 RAL-859 930 chr3L 13774638 13774655 chr3L 13774724 13774736 4 84 3.5 2.5 3.0 1.0 98 chr3L 13774638 intron bru-3 - chr3L 13774687 intron bru-3 - chr3L 13774736 intron bru-3 - chr3L_4_13770001 chr3L_13770001 RAL-859 931 chr3L 13804544 13804577 chr3L 13822830 13822863 roo 8 18286 2.5 2.5 2.5 2.3 18319 chr3L 13804544 intergenic not near genes chr3L 13813704 intergenic not near genes chr3L 13822863 intergenic not near genes chr3L_8_13810001 chr3L_13810001 RAL-859 932 chr3L 13920422 13920432 chr3L 13920502 13920512 4 80 1.5 1.0 1.2 1.8 90 chr3L 13920422 intron Rgl - chr3L 13920467 intron Rgl - chr3L 13920512 intron Rgl - chr3L_4_13920001 chr3L_13920001 RAL-859 933 chr3L 13988733 13988765 chr3L 13990342 13990375 7 1609 6.0 14.5 10.2 0.6 1642 chr3L 13988733 intron CG17364 - chr3L 13989554 intron CG17364 - chr3L 13990375 intron CG17364 - chr3L_7_13985001 chr3L_13985001 RAL-859 934 chr3L 14076080 14076103 chr3L 14076158 14076182 4 79 1.0 1.0 1.0 2.0 102 chr3L 14076080 3` UTR,intron Pex1 +,btl + chr3L 14076131 intron btl + chr3L 14076182 intron btl + chr3L_4_14075001 chr3L_14075001 RAL-859 935 chr3L 14141754 14141759 chr3L 14141844 14141849 4 90 3.0 3.0 3.0 1.0 95 chr3L 14141754 intergenic not near genes chr3L 14141802 intergenic not near genes chr3L 14141849 intergenic not near genes chr3L_4_14140001 chr3L_14140001 RAL-859 936 chr3L 14175372 14175377 chr3L 14175520 14175525 4 148 0.5 1.0 0.8 2.2 153 chr3L 14175372 intergenic D - chr3L 14175448 intergenic D - chr3L 14175525 intergenic D - chr3L_4_14175001 chr3L_14175001 RAL-859 937 chr3L 14194727 14194735 chr3L 14194803 14194811 4 76 1.0 1.5 1.2 1.8 84 chr3L 14194727 intron nuf + chr3L 14194769 intron nuf + chr3L 14194811 intron nuf + chr3L_4_14190001 chr3L_14190001 RAL-859 938 chr3L 14196415 14196444 chr3L 14196500 14196529 6 85 1.0 1.5 1.2 2.7 114 chr3L 14196415 intron nuf + chr3L 14196472 intron nuf + chr3L 14196529 intron nuf + chr3L_6_14195001 chr3L_14195001 RAL-859 939 chr3L 14216213 14216236 chr3L 14216347 14216371 9 135 3.5 3.0 3.2 2.1 158 chr3L 14216213 intron nuf + chr3L 14216292 intron nuf + chr3L 14216371 intron nuf + chr3L_9_14215001 chr3L_14215001 RAL-859 940 chr3L 14223326 14223342 chr3L 14223441 14223457 4 114 2.5 5.0 3.8 0.8 131 chr3L 14223326 intron nuf + chr3L 14223392 intron nuf + chr3L 14223457 intron nuf + chr3L_4_14220001 chr3L_14220001 RAL-859 941 chr3L 14250843 14250865 chr3L 14250928 14250954 6 88 2.0 2.5 2.2 1.9 111 chr3L 14250843 intergenic not near genes chr3L 14250898 intergenic not near genes chr3L 14250954 intergenic not near genes chr3L_6_14250001 chr3L_14250001 RAL-859 942 chr3L 14282599 14282602 chr3L 14282678 14282682 4 80 0.0 7.5 3.8 0.8 83 chr3L 14282599 intron fz + chr3L 14282640 intron fz + chr3L 14282682 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-859 943 chr3L 14295980 14296004 chr3L 14296466 14296490 roo 7 486 3.0 2.5 2.8 1.8 510 chr3L 14295980 intron fz + chr3L 14296235 intron fz + chr3L 14296490 intron fz + chr3L_7_14295001 chr3L_14295001 RAL-859 944 chr3L 14309585 14309614 chr3L 14309670 14309699 6 85 0.0 2.5 1.2 2.7 114 chr3L 14309585 intron fz + chr3L 14309642 intron fz + chr3L 14309699 intron fz + chr3L_6_14305001 chr3L_14305001 RAL-859 945 chr3L 14356519 14356552 chr3L 14356598 14356632 10 80 3.0 2.0 2.5 2.9 113 chr3L 14356519 intron fz + chr3L 14356576 intron fz + chr3L 14356632 intron fz + chr3L_10_14355001 chr3L_14355001 RAL-859 946 chr3L 14399183 14399193 chr3L 14399271 14399282 5 88 2.0 0.0 1.0 2.5 99 chr3L 14399183 intergenic not near genes chr3L 14399232 intergenic not near genes chr3L 14399282 intergenic not near genes chr3L_5_14395001 chr3L_14395001 RAL-859 947 chr3L 14411863 14411899 chr3L 14411942 14411978 6 79 1.5 2.0 1.8 2.1 115 chr3L 14411863 intron CG3919 + chr3L 14411920 intron CG3919 + chr3L 14411978 intron CG3919 + chr3L_6_14410001 chr3L_14410001 RAL-859 948 chr3L 14417546 14417577 chr3L 14417637 14417668 8 91 1.5 0.5 1.0 4.0 122 chr3L 14417546 intron bbg - chr3L 14417607 intron bbg - chr3L 14417668 intron bbg - chr3L_8_14415001 chr3L_14415001 RAL-859 949 chr3L 14439213 14439242 chr3L 14439375 14439405 8 163 0.5 1.5 1.0 4.0 192 chr3L 14439213 intron bbg - chr3L 14439309 intron bbg - chr3L 14439405 intron bbg - chr3L_8_14435001 chr3L_14435001 RAL-859 950 chr3L 14467125 14467154 chr3L 14467213 14467242 9 88 3.5 3.5 3.5 2.0 117 chr3L 14467125 intron bbg - chr3L 14467184 intron bbg - chr3L 14467242 intron bbg - chr3L_9_14465001 chr3L_14465001 RAL-859 951 chr3L 14468447 14468468 chr3L 14473653 14473674 copia 5 5206 2.0 2.5 2.2 1.6 5227 chr3L 14468447 intron bbg - chr3L 14471060 intron bbg - chr3L 14473674 intron bbg - chr3L_5_14470001 chr3L_14470001 RAL-859 952 chr3L 14486018 14486029 chr3L 14486099 14486110 6 81 3.0 0.5 1.8 2.1 92 chr3L 14486018 intron bbg - chr3L 14486064 intron bbg - chr3L 14486110 intron bbg - chr3L_6_14485001 chr3L_14485001 RAL-859 953 chr3L 14565743 14565769 chr3L 14565834 14565860 6 91 3.0 1.5 2.2 1.9 117 chr3L 14565743 intergenic not near genes chr3L 14565802 intergenic not near genes chr3L 14565860 intergenic not near genes chr3L_6_14565001 chr3L_14565001 RAL-859 954 chr3L 14585607 14585628 chr3L 14585684 14585706 9 78 3.0 2.0 2.5 2.6 99 chr3L 14585607 intron HGTX - chr3L 14585656 intron HGTX - chr3L 14585706 intron HGTX - chr3L_9_14585001 chr3L_14585001 RAL-859 955 chr3L 14741143 14741165 chr3L 14741220 14741243 6 78 0.5 1.0 0.8 3.3 100 chr3L 14741143 intron ome + chr3L 14741193 intron ome + chr3L 14741243 intron ome + chr3L_6_14740001 chr3L_14740001 RAL-859 956 chr3L 14861814 14861833 chr3L 14861893 14861913 8 80 2.0 4.0 3.0 2.0 99 chr3L 14861814 intron CG17839 + chr3L 14861864 intron CG17839 + chr3L 14861913 intron CG17839 + chr3L_8_14860001 chr3L_14860001 RAL-859 957 chr3L 14912672 14912704 chr3L 14915246 14915278 7 2575 18.0 28.0 23.0 0.3 2606 chr3L 14912672 intron DCX-EMAP + chr3L 14913975 intron DCX-EMAP + chr3L 14915278 intron DCX-EMAP + chr3L_7_14910001 chr3L_14910001 RAL-859 958 chr3L 14918500 14918523 chr3L 14918586 14918610 4 86 0.5 1.5 1.0 2.0 110 chr3L 14918500 intron DCX-EMAP + chr3L 14918555 intron DCX-EMAP + chr3L 14918610 intron DCX-EMAP + chr3L_4_14915001 chr3L_14915001 RAL-859 959 chr3L 15048119 15048138 chr3L 15048483 15048502 4 364 15.5 14.5 15.0 0.2 383 chr3L 15048119 intron Sytbeta - chr3L 15048310 intron Sytbeta - chr3L 15048502 intron Sytbeta - chr3L_4_15045001 chr3L_15045001 RAL-859 960 chr3L 15085049 15085070 chr3L 15086215 15086236 1360 5 1166 3.0 1.5 2.2 1.6 1187 chr3L 15085049 intron cp309 - chr3L 15085642 intron cp309 - chr3L 15086236 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-859 961 chr3L 15257435 15257447 chr3L 15257648 15257660 9 213 0.5 0.5 0.5 6.0 225 chr3L 15257435 intergenic not near genes chr3L 15257548 intergenic not near genes chr3L 15257660 intergenic not near genes chr3L_9_15255001 chr3L_15255001 RAL-859 962 chr3L 15295768 15295801 chr3L 15298611 15298644 gypsy5 7 2843 4.0 1.5 2.8 1.8 2876 chr3L 15295768 intergenic not near genes chr3L 15297206 intergenic not near genes chr3L 15298644 intergenic Best4 + chr3L_7_15295001 chr3L_15295001 RAL-859 963 chr3L 15328586 15328609 chr3L 15328671 15328694 4 85 0.5 1.5 1.0 2.0 108 chr3L 15328586 intergenic not near genes chr3L 15328640 intergenic not near genes chr3L 15328694 intergenic not near genes chr3L_4_15325001 chr3L_15325001 RAL-859 964 chr3L 15633189 15633208 chr3L 15633269 15633288 5 80 1.5 0.0 0.8 2.8 99 chr3L 15633189 intron comm3 - chr3L 15633238 intron comm3 - chr3L 15633288 intron comm3 - chr3L_5_15630001 chr3L_15630001 RAL-859 965 chr3L 15641247 15641268 chr3L 15641327 15641348 7 80 0.0 1.0 0.5 4.7 101 chr3L 15641247 intron comm3 - chr3L 15641298 intron comm3 - chr3L 15641348 intron comm3 - chr3L_7_15640001 chr3L_15640001 RAL-859 966 chr3L 15658472 15658491 chr3L 15658561 15658580 4 88 2.5 2.5 2.5 1.1 108 chr3L 15658472 intergenic Eig71Eg +,Eig71Eh - chr3L 15658526 intergenic Eig71Eg +,Eig71Eh - chr3L 15658580 intergenic Eig71Eh -,Eig71Eg + chr3L_4_15655001 chr3L_15655001 RAL-859 967 chr3L 15803237 15803256 chr3L 15803381 15803399 5 143 3.0 0.5 1.8 1.8 162 chr3L 15803237 intergenic not near genes chr3L 15803318 intergenic not near genes chr3L 15803399 intergenic not near genes chr3L_5_15800001 chr3L_15800001 RAL-859 968 chr3L 15832254 15832284 chr3L 15832335 15832365 6 81 2.5 2.5 2.5 1.7 111 chr3L 15832254 intergenic CG12713 +,dbo + chr3L 15832310 intergenic CG12713 +,dbo + chr3L 15832365 intergenic CG12713 +,dbo + chr3L_6_15830001 chr3L_15830001 RAL-859 969 chr3L 15871601 15871615 chr3L 15871685 15871699 5 84 0.0 0.0 0.0 5.0 98 chr3L 15871601 intron pHCl - chr3L 15871650 intron pHCl - chr3L 15871699 intron pHCl - chr3L_5_15870001 chr3L_15870001 RAL-859 970 chr3L 15899227 15899258 chr3L 15899794 15899823 jockey 7 566 2.5 4.0 3.2 1.7 596 chr3L 15899227 intergenic pHCl - chr3L 15899525 intergenic pHCl - chr3L 15899823 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-859 971 chr3L 15929194 15929218 chr3L 15938341 15938365 roo 4 9147 1.0 1.5 1.2 1.8 9171 chr3L 15929194 intron Pka-C3 - chr3L 15933780 intron Pka-C3 - chr3L 15938365 intron Pka-C3 - chr3L_4_15930001 chr3L_15930001 RAL-859 972 chr3L 15948754 15948777 chr3L 15948837 15948860 5 83 1.0 2.5 1.8 1.8 106 chr3L 15948754 intron Pka-C3 - chr3L 15948807 intron Pka-C3 - chr3L 15948860 intron Pka-C3 - chr3L_5_15945001 chr3L_15945001 RAL-859 973 chr3L 16072657 16072679 chr3L 16072795 16072817 10 138 2.0 4.0 3.0 2.5 160 chr3L 16072657 intron Mbs + chr3L 16072737 intron Mbs + chr3L 16072817 intron Mbs + chr3L_10_16070001 chr3L_16070001 RAL-859 974 chr3L 16158809 16158829 chr3L 16158894 16158914 8 85 0.0 2.0 1.0 4.0 105 chr3L 16158809 intron CG5151 - chr3L 16158862 intron CG5151 - chr3L 16158914 intron CG5151 - chr3L_8_16155001 chr3L_16155001 RAL-859 975 chr3L 16281476 16281488 chr3L 16281587 16281601 4 110 2.5 7.0 4.8 0.7 125 chr3L 16281476 exon CG13049 - chr3L 16281538 exon CG13049 - chr3L 16281601 exon CG13049 - chr3L_4_16280001 chr3L_16280001 RAL-859 976 chr3L 16322823 16322847 chr3L 16322912 16322937 13 90 2.5 2.0 2.2 4.1 114 chr3L 16322823 intergenic not near genes chr3L 16322880 intergenic not near genes chr3L 16322937 intergenic not near genes chr3L_13_16320001 chr3L_16320001 RAL-859 977 chr3L 16443848 16443865 chr3L 16446188 16446205 Doc 6 2339 2.5 3.5 3.0 1.5 2357 chr3L 16443848 intron,intron CG33158 +,dsx-c73A - chr3L 16445026 intron,intron CG33158 +,dsx-c73A - chr3L 16446205 intron,intron CG33158 +,dsx-c73A - chr3L_6_16445001 chr3L_16445001 RAL-859 978 chr3L 16493974 16493998 chr3L 16494491 16494515 jockey 9 516 5.0 2.0 3.5 2.0 541 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494244 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494515 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_9_16490001 chr3L_16490001 RAL-859 979 chr3L 16509400 16509423 chr3L 16509551 16509574 5 151 2.5 2.0 2.2 1.6 174 chr3L 16509400 intron CG43373 - chr3L 16509487 intron CG43373 - chr3L 16509574 intron CG43373 - chr3L_5_16505001 chr3L_16505001 RAL-859 980 chr3L 16533569 16533580 chr3L 16533680 16533691 4 111 0.5 2.5 1.5 1.6 122 chr3L 16533569 intron CG43373 - chr3L 16533630 intron CG43373 - chr3L 16533691 intron CG43373 - chr3L_4_16530001 chr3L_16530001 RAL-859 981 chr3L 16536350 16536370 chr3L 16536441 16536462 8 92 3.0 1.0 2.0 2.7 112 chr3L 16536350 intron CG43373 - chr3L 16536406 intron CG43373 - chr3L 16536462 intron CG43373 - chr3L_8_16535001 chr3L_16535001 RAL-859 982 chr3L 16616511 16616540 chr3L 16621839 16621868 297 8 5328 2.5 0.5 1.5 3.2 5357 chr3L 16616511 3` UTR Abl - chr3L 16619190 3` UTR Abl - chr3L 16621868 3` UTR Abl - chr3L_8_16615001 chr3L_16615001 RAL-859 983 chr3L 16760849 16760882 chr3L 16760985 16761018 13 137 0.0 2.5 1.2 5.9 169 chr3L 16760849 intergenic not near genes chr3L 16760934 intergenic not near genes chr3L 16761018 intergenic not near genes chr3L_13_16760001 chr3L_16760001 RAL-859 984 chr3L 16808051 16808072 chr3L 16808125 16808148 5 76 0.5 0.0 0.2 4.2 97 chr3L 16808051 intron nudC + chr3L 16808100 intron nudC + chr3L 16808148 intron nudC + chr3L_5_16805001 chr3L_16805001 RAL-859 985 chr3L 16818748 16818774 chr3L 16818824 16818850 9 76 3.0 1.5 2.2 2.8 102 chr3L 16818748 intron,intron nudC +,CG13024 - chr3L 16818799 intron,intron nudC +,CG13024 - chr3L 16818850 intron,intron nudC +,CG13024 - chr3L_9_16815001 chr3L_16815001 RAL-859 986 chr3L 16861028 16861047 chr3L 16861130 16861149 4 102 1.5 3.0 2.2 1.2 121 chr3L 16861028 intron,exon Rh4 -,CG13029 + chr3L 16861088 intron,intron Rh4 -,CG13029 + chr3L 16861149 intron,intron Rh4 -,CG13029 + chr3L_4_16860001 chr3L_16860001 RAL-859 987 chr3L 16945732 16945760 chr3L 16954880 16954913 roo 9 9151 5.0 0.5 2.8 2.4 9181 chr3L 16945732 exon Obp73a + chr3L 16950322 intergenic not near genes chr3L 16954913 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-859 988 chr3L 17026789 17026822 chr3L 17026870 17026903 8 81 1.0 3.5 2.2 2.5 114 chr3L 17026789 exon Fit2 + chr3L 17026846 3` UTR Fit2 + chr3L 17026903 3` UTR Fit2 + chr3L_8_17025001 chr3L_17025001 RAL-859 989 chr3L 17027172 17027187 chr3L 17027264 17027279 6 92 1.0 2.0 1.5 2.4 107 chr3L 17027172 intergenic Fit2 +,CG7730 + chr3L 17027226 intergenic Fit2 +,CG7730 + chr3L 17027279 intergenic Fit2 +,CG7730 + chr3L_6_17025001 chr3L_17025001 RAL-859 990 chr3L 17071896 17071923 chr3L 17071976 17072003 9 80 2.0 3.0 2.5 2.6 107 chr3L 17071896 intron Rbp6 - chr3L 17071950 intron Rbp6 - chr3L 17072003 intron Rbp6 - chr3L_9_17070001 chr3L_17070001 RAL-859 991 chr3L 17085002 17085029 chr3L 17094151 17094178 roo 10 9149 3.5 2.5 3.0 2.5 9176 chr3L 17085002 intron Rbp6 - chr3L 17089590 intron Rbp6 - chr3L 17094178 intron Rbp6 - chr3L_10_17085001 chr3L_17085001 RAL-859 992 chr3L 17117116 17117125 chr3L 17117201 17117210 5 85 0.0 3.0 1.5 2.0 94 chr3L 17117116 intron Rbp6 - chr3L 17117163 intron Rbp6 - chr3L 17117210 intron Rbp6 - chr3L_5_17115001 chr3L_17115001 RAL-859 993 chr3L 17149165 17149182 chr3L 17149246 17149263 7 81 5.0 0.0 2.5 2.0 98 chr3L 17149165 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149263 intron Rbp6 - chr3L_7_17145001 chr3L_17145001 RAL-859 994 chr3L 17510734 17510766 chr3L 17510818 17510850 16 83 0.5 2.0 1.2 7.3 116 chr3L 17510734 exon Oatp74D + chr3L 17510792 intron Oatp74D + chr3L 17510850 intron Oatp74D + chr3L_16_17510001 chr3L_17510001 RAL-859 995 chr3L 17592788 17592816 chr3L 17592879 17592907 5 91 1.0 1.0 1.0 2.5 119 chr3L 17592788 intron Eip74EF - chr3L 17592848 intron Eip74EF - chr3L 17592907 intron Eip74EF - chr3L_5_17590001 chr3L_17590001 RAL-859 996 chr3L 17644586 17644620 chr3L 17644662 17644696 10 76 1.0 2.5 1.8 3.6 110 chr3L 17644586 intron Pep - chr3L 17644641 intron Pep - chr3L 17644696 intron Pep - chr3L_10_17640001 chr3L_17640001 RAL-859 997 chr3L 17659723 17659759 chr3L 17659800 17659836 6 77 0.5 1.0 0.8 3.3 113 chr3L 17659723 intergenic Crtc - chr3L 17659780 intergenic Crtc - chr3L 17659836 3` UTR Crtc - chr3L_6_17655001 chr3L_17655001 RAL-859 998 chr3L 17702355 17702385 chr3L 17702439 17702467 4 84 0.5 2.0 1.2 1.8 112 chr3L 17702355 intron Ccn + chr3L 17702411 intron Ccn + chr3L 17702467 intron Ccn + chr3L_4_17700001 chr3L_17700001 RAL-859 999 chr3L 17743421 17743442 chr3L 17743504 17743525 7 83 6.0 3.0 4.5 1.3 104 chr3L 17743421 intron Ccn + chr3L 17743473 intron Ccn + chr3L 17743525 intron Ccn + chr3L_7_17740001 chr3L_17740001 RAL-859 1000 chr3L 17773211 17773238 chr3L 17773308 17773335 5 97 2.5 3.0 2.8 1.3 124 chr3L 17773211 intergenic not near genes chr3L 17773273 intergenic not near genes chr3L 17773335 intergenic not near genes chr3L_5_17770001 chr3L_17770001 RAL-859 1001 chr3L 17782356 17782376 chr3L 17782632 17782652 5 275 1.5 2.5 2.0 1.7 296 chr3L 17782356 intergenic not near genes chr3L 17782504 intergenic not near genes chr3L 17782652 intergenic not near genes chr3L_5_17780001 chr3L_17780001 RAL-859 1002 chr3L 17799820 17799834 chr3L 17801607 17801621 S-element 5 1787 0.5 1.5 1.0 2.5 1801 chr3L 17799820 intron NUCB1 - chr3L 17800720 intron NUCB1 - chr3L 17801621 intron NUCB1 - chr3L_5_17800001 chr3L_17800001 RAL-859 1003 chr3L 17827285 17827317 chr3L 17827376 17827408 10 91 1.5 3.0 2.2 3.1 123 chr3L 17827285 intron Grd + chr3L 17827346 intron Grd + chr3L 17827408 intron Grd + chr3L_10_17825001 chr3L_17825001 RAL-859 1004 chr3L 17906590 17906607 chr3L 17906690 17906708 4 100 1.5 2.5 2.0 1.3 118 chr3L 17906590 intron Prestin - chr3L 17906649 intron Prestin - chr3L 17906708 intron Prestin - chr3L_4_17905001 chr3L_17905001 RAL-859 1005 chr3L 17918370 17918401 chr3L 17921173 17921203 opus 4 2803 1.5 0.5 1.0 2.0 2833 chr3L 17918370 intergenic not near genes chr3L 17919786 intergenic not near genes chr3L 17921203 intergenic not near genes chr3L_4_17915001 chr3L_17915001 RAL-859 1006 chr3L 17991569 17991588 chr3L 17991647 17991666 4 78 0.5 1.0 0.8 2.2 97 chr3L 17991569 intron Eip75B - chr3L 17991618 intron Eip75B - chr3L 17991666 intron Eip75B - chr3L_4_17990001 chr3L_17990001 RAL-859 1007 chr3L 18021354 18021384 chr3L 18021446 18021476 11 92 2.5 2.0 2.2 3.4 122 chr3L 18021354 intron Eip75B - chr3L 18021415 intron Eip75B - chr3L 18021476 intron Eip75B - chr3L_11_18020001 chr3L_18020001 RAL-859 1008 chr3L 18042240 18042508 chr3L 18042318 18042586 10 78 1.5 2.5 2.0 3.3 346 chr3L 18042240 intron Eip75B - chr3L 18042413 intron Eip75B - chr3L 18042586 intron Eip75B - chr3L_10_18040001 chr3L_18040001 RAL-859 1009 chr3L 18047709 18047741 chr3L 18056765 18056798 roo 6 9056 1.0 2.0 1.5 2.4 9089 chr3L 18047709 intron Eip75B - chr3L 18052254 intron Eip75B - chr3L 18056798 intron Eip75B - chr3L_6_18050001 chr3L_18050001 RAL-859 1010 chr3L 18119659 18119679 chr3L 18119757 18119777 6 98 0.0 2.0 1.0 3.0 118 chr3L 18119659 intron CG7341 + chr3L 18119718 intron CG7341 + chr3L 18119777 intron CG7341 + chr3L_6_18115001 chr3L_18115001 RAL-859 1011 chr3L 18154080 18154100 chr3L 18154164 18154184 5 84 1.0 3.5 2.2 1.6 104 chr3L 18154080 intergenic CG7330 + chr3L 18154132 intergenic CG7330 + chr3L 18154184 intergenic CG7330 + chr3L_5_18150001 chr3L_18150001 RAL-859 1012 chr3L 18221105 18221120 chr3L 18221186 18221201 5 80 0.0 0.0 0.0 5.0 96 chr3L 18221105 intergenic not near genes chr3L 18221153 intergenic not near genes chr3L 18221201 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-859 1013 chr3L 18528627 18528655 chr3L 18537787 18537816 roo 4 9161 1.5 0.5 1.0 2.0 9189 chr3L 18528627 intergenic not near genes chr3L 18533222 intergenic not near genes chr3L 18537816 intergenic not near genes chr3L_4_18530001 chr3L_18530001 RAL-859 1014 chr3L 18546701 18546733 chr3L 18546795 18546827 9 94 1.0 1.5 1.2 4.1 126 chr3L 18546701 intergenic not near genes chr3L 18546764 intergenic not near genes chr3L 18546827 intergenic not near genes chr3L_9_18545001 chr3L_18545001 RAL-859 1015 chr3L 18567025 18567054 chr3L 18567111 18567140 5 86 2.5 4.0 3.2 1.2 115 chr3L 18567025 intron AstC-R1 + chr3L 18567082 intron AstC-R1 + chr3L 18567140 intron AstC-R1 + chr3L_5_18565001 chr3L_18565001 RAL-859 1016 chr3L 18579564 18579596 chr3L 18579692 18579723 7 128 3.5 3.0 3.2 1.7 159 chr3L 18579564 intergenic not near genes chr3L 18579644 intergenic not near genes chr3L 18579723 intergenic not near genes chr3L_7_18575001 chr3L_18575001 RAL-859 1017 chr3L 18593950 18593982 chr3L 18595930 18595962 Doc 6 1980 2.5 0.0 1.2 2.7 2012 chr3L 18593950 intergenic term - chr3L 18594956 intergenic not near genes chr3L 18595962 intergenic CR45389 + chr3L_6_18590001 chr3L_18590001 RAL-859 1018 chr3L 18638574 18638609 chr3L 18638668 18638703 7 94 1.0 1.5 1.2 3.2 129 chr3L 18638574 intron MYPT-75D + chr3L 18638638 intron MYPT-75D + chr3L 18638703 intron MYPT-75D + chr3L_7_18635001 chr3L_18635001 RAL-859 1019 chr3L 18656184 18656213 chr3L 18656269 18656298 12 84 3.0 4.0 3.5 2.7 114 chr3L 18656184 intron MYPT-75D + chr3L 18656241 intron MYPT-75D + chr3L 18656298 intron MYPT-75D + chr3L_12_18655001 chr3L_18655001 RAL-859 1020 chr3L 18721782 18721806 chr3L 18721873 18721897 4 91 1.5 3.0 2.2 1.2 115 chr3L 18721782 intergenic CG12477 - chr3L 18721840 intergenic CG12477 - chr3L 18721897 3` UTR CG12477 - chr3L_4_18720001 chr3L_18720001 RAL-859 1021 chr3L 18725267 18725297 chr3L 18725573 18725602 4 306 1.0 3.5 2.2 1.2 335 chr3L 18725267 intergenic not near genes chr3L 18725434 intergenic not near genes chr3L 18725602 intergenic not near genes chr3L_4_18725001 chr3L_18725001 RAL-859 1022 chr3L 18772410 18772439 chr3L 18781091 18781120 roo 15 8681 2.5 1.5 2.0 5.0 8710 chr3L 18772410 intron ftz-f1 - chr3L 18776765 intron ftz-f1 - chr3L 18781120 intron ftz-f1 - chr3L_15_18775001 chr3L_18775001 RAL-859 1023 chr3L 18843872 18843879 chr3L 18843969 18843977 5 98 3.5 0.5 2.0 1.7 105 chr3L 18843872 intron Indy - chr3L 18843924 intron Indy - chr3L 18843977 intron Indy - chr3L_5_18840001 chr3L_18840001 RAL-859 1024 chr3L 18868964 18868996 chr3L 18869045 18869077 5 81 1.5 1.0 1.2 2.3 113 chr3L 18868964 3` UTR Dysb + chr3L 18869020 3` UTR Dysb + chr3L 18869077 3` UTR Dysb + chr3L_5_18865001 chr3L_18865001 RAL-859 1025 chr3L 18933092 18933127 chr3L 18933177 18933212 6 85 0.5 0.5 0.5 4.0 120 chr3L 18933092 intron CG32204 - chr3L 18933152 intron CG32204 - chr3L 18933212 intron CG32204 - chr3L_6_18930001 chr3L_18930001 RAL-859 1026 chr3L 19008848 19008862 chr3L 19009186 19009200 jockey 6 338 5.0 3.5 4.2 1.2 352 chr3L 19008848 intron nkd - chr3L 19009024 intron nkd - chr3L 19009200 intron nkd - chr3L_6_19005001 chr3L_19005001 RAL-859 1027 chr3L 19115634 19115668 chr3L 19115814 19115848 BS 7 180 1.5 1.5 1.5 2.8 214 chr3L 19115634 intron CG14082 - chr3L 19115741 intron CG14082 - chr3L 19115848 intron CG14082 - chr3L_7_19115001 chr3L_19115001 RAL-859 1028 chr3L 19117048 19117075 chr3L 19124494 19124522 mdg1 6 7447 3.5 3.5 3.5 1.3 7474 chr3L 19117048 intron CG14082 - chr3L 19120785 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-859 1029 chr3L 19208057 19208089 chr3L 19209430 19209463 Doc 8 1374 3.0 1.0 2.0 2.7 1406 chr3L 19208057 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209463 intron fz2 - chr3L_8_19205001 chr3L_19205001 RAL-859 1030 chr3L 19219753 19219771 chr3L 19219829 19219847 4 76 1.5 0.0 0.8 2.2 94 chr3L 19219753 intron fz2 - chr3L 19219800 intron fz2 - chr3L 19219847 intron fz2 - chr3L_4_19215001 chr3L_19215001 RAL-859 1031 chr3L 19262215 19262242 chr3L 19262296 19262324 6 82 1.0 2.0 1.5 2.4 109 chr3L 19262215 3` UTR Bet1 + chr3L 19262270 3` UTR,3` UTR Bet1 +,Max - chr3L 19262324 3` UTR,3` UTR Bet1 +,Max - chr3L_6_19260001 chr3L_19260001 RAL-859 1032 chr3L 19269820 19269849 chr3L 19270024 19270053 8 204 0.5 6.0 3.2 1.9 233 chr3L 19269820 intron,exon CG14085 +,CG14088 - chr3L 19269936 intron,exon CG14085 +,CG14088 - chr3L 19270053 intron,exon CG14085 +,CG14088 - chr3L_8_19265001 chr3L_19265001 RAL-859 1033 chr3L 19265220 19265253 chr3L 19272802 19272835 16 7582 32.0 21.5 26.8 0.6 7615 chr3L 19265220 3` UTR,exon CG42374 +,CG9666 + chr3L 19269028 intergenic CG9629 -,CG14085 + chr3L 19272835 exon CG14085 + chr3L_16_19265001 chr3L_19265001 RAL-859 1034 chr3L 19430405 19430432 chr3L 19430479 19430510 6 77 0.0 1.5 0.8 3.3 105 chr3L 19430405 intergenic not near genes chr3L 19430458 intergenic not near genes chr3L 19430510 intergenic not near genes chr3L_6_19430001 chr3L_19430001 RAL-859 1035 chr3L 19439174 19439204 chr3L 19439253 19439283 6 79 1.5 1.0 1.2 2.7 109 chr3L 19439174 intergenic not near genes chr3L 19439228 intergenic not near genes chr3L 19439283 intergenic not near genes chr3L_6_19435001 chr3L_19435001 RAL-859 1036 chr3L 19464319 19464319 chr3L 19464395 19464396 4 77 6.0 0.0 3.0 1.0 77 chr3L 19464319 exon CG14095 - chr3L 19464358 exon CG14095 - chr3L 19464396 exon CG14095 - chr3L_4_19460001 chr3L_19460001 RAL-859 1037 chr3L 19488476 19488494 chr3L 19488558 19488576 4 82 5.0 1.5 3.2 1.0 100 chr3L 19488476 intergenic pncr009:3L -,CG32212 + chr3L 19488526 intergenic pncr009:3L -,CG32212 + chr3L 19488576 intergenic pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-859 1038 chr3L 19527931 19527956 chr3L 19528010 19528035 5 79 2.0 3.5 2.8 1.3 104 chr3L 19527931 intergenic not near genes chr3L 19527983 intergenic not near genes chr3L 19528035 intergenic not near genes chr3L_5_19525001 chr3L_19525001 RAL-859 1039 chr3L 19544235 19544265 chr3L 19544311 19544341 8 76 2.5 0.5 1.5 3.2 106 chr3L 19544235 intergenic CG9279 -,l(3)76BDr - chr3L 19544288 intergenic l(3)76BDr -,CG9279 - chr3L 19544341 intergenic l(3)76BDr -,CG9279 - chr3L_8_19540001 chr3L_19540001 RAL-859 1040 chr3L 19848502 19848535 chr3L 19857692 19857725 roo 8 9190 2.5 1.5 2.0 2.7 9223 chr3L 19848502 intron Papss + chr3L 19853114 intron Papss + chr3L 19857725 intron Papss + chr3L_8_19850001 chr3L_19850001 RAL-859 1041 chr3L 19861824 19861851 chr3L 19863612 19863639 S-element 4 1788 3.5 2.5 3.0 1.0 1815 chr3L 19861824 5` UTR CR45433 + chr3L 19862732 intergenic not near genes chr3L 19863639 intergenic not near genes chr3L_4_19860001 chr3L_19860001 RAL-859 1042 chr3L 20100465 20100498 chr3L 20100546 20100579 6 81 2.5 1.5 2.0 2.0 114 chr3L 20100465 intron CG14186 - chr3L 20100522 intron CG14186 - chr3L 20100579 intron CG14186 - chr3L_6_20100001 chr3L_20100001 RAL-859 1043 chr3L 20113670 20113683 chr3L 20122927 20122940 roo 4 9257 1.0 2.0 1.5 1.6 9270 chr3L 20113670 intergenic not near genes chr3L 20118305 intergenic not near genes chr3L 20122940 intergenic not near genes chr3L_4_20115001 chr3L_20115001 RAL-859 1044 chr3L 20148285 20148317 chr3L 20148375 20148407 10 90 1.5 2.0 1.8 3.6 122 chr3L 20148285 intergenic not near genes chr3L 20148346 intergenic not near genes chr3L 20148407 intergenic not near genes chr3L_10_20145001 chr3L_20145001 RAL-859 1045 chr3L 20256637 20256666 chr3L 20256746 20256776 8 110 2.5 1.0 1.8 2.9 139 chr3L 20256637 exon rdgC + chr3L 20256706 intron rdgC + chr3L 20256776 intron rdgC + chr3L_8_20255001 chr3L_20255001 RAL-859 1046 chr3L 20264314 20264337 chr3L 20264399 20264423 7 86 2.0 2.0 2.0 2.3 109 chr3L 20264314 3` UTR rdgC + chr3L 20264368 3` UTR rdgC + chr3L 20264423 3` UTR rdgC + chr3L_7_20260001 chr3L_20260001 RAL-859 1047 chr3L 20386945 20386969 chr3L 20387047 20387071 7 102 1.5 2.5 2.0 2.3 126 chr3L 20386945 intron fbl + chr3L 20387008 intron fbl + chr3L 20387071 intron fbl + chr3L_7_20385001 chr3L_20385001 RAL-859 1048 chr3L 20406288 20406296 chr3L 20409875 20409883 4 3586 14.0 9.0 11.5 0.3 3595 chr3L 20406288 intergenic not near genes chr3L 20408086 exon CG13248 - chr3L 20409883 intron CG13248 - chr3L_4_20405001 chr3L_20405001 RAL-859 1049 chr3L 20444123 20444151 chr3L 20444210 20444238 4 87 1.0 1.0 1.0 2.0 115 chr3L 20444123 intron CG5910 + chr3L 20444180 intron CG5910 + chr3L 20444238 intron CG5910 + chr3L_4_20440001 chr3L_20440001 RAL-859 1050 chr3L 20462586 20462599 chr3L 20462667 20462678 5 80 2.0 3.0 2.5 1.4 92 chr3L 20462586 intron atk - chr3L 20462632 intron atk - chr3L 20462678 intron atk - chr3L_5_20460001 chr3L_20460001 RAL-859 1051 chr3L 20476754 20476781 chr3L 20484351 20484380 springer 7 7599 2.0 2.5 2.2 2.2 7626 chr3L 20476754 3` UTR isoQC + chr3L 20480567 intergenic not near genes chr3L 20484380 3` UTR ZnT77C - chr3L_7_20480001 chr3L_20480001 RAL-859 1052 chr3L 20563793 20563827 chr3L 20563878 20563912 15 84 2.0 2.0 2.0 5.0 119 chr3L 20563793 intergenic not near genes chr3L 20563852 intergenic not near genes chr3L 20563912 intergenic not near genes chr3L_15_20560001 chr3L_20560001 RAL-859 1053 chr3L 20590063 20590096 chr3L 20590602 20590635 412 10 538 4.0 3.5 3.8 2.1 572 chr3L 20590063 intergenic not near genes chr3L 20590349 intergenic not near genes chr3L 20590635 intergenic not near genes chr3L_10_20590001 chr3L_20590001 RAL-859 1054 chr3L 20603430 20603460 chr3L 20603521 20603551 5 91 1.0 0.0 0.5 3.3 121 chr3L 20603430 intron knrl - chr3L 20603490 intron knrl - chr3L 20603551 intron knrl - chr3L_5_20600001 chr3L_20600001 RAL-859 1055 chr3L 20624612 20624637 chr3L 20624698 20624722 7 86 2.0 1.5 1.8 2.5 110 chr3L 20624612 intergenic CR44684 - chr3L 20624667 intergenic CR44684 - chr3L 20624722 intergenic CR44684 - chr3L_7_20620001 chr3L_20620001 RAL-859 1056 chr3L 20668448 20668470 chr3L 20668525 20668546 11 77 3.5 2.0 2.8 2.9 98 chr3L 20668448 intergenic not near genes chr3L 20668497 intergenic not near genes chr3L 20668546 intergenic not near genes chr3L_11_20665001 chr3L_20665001 RAL-859 1057 chr3L 20710758 20710784 chr3L 20710834 20710861 4 76 0.5 0.5 0.5 2.7 103 chr3L 20710758 intergenic not near genes chr3L 20710810 intergenic not near genes chr3L 20710861 intergenic not near genes chr3L_4_20710001 chr3L_20710001 RAL-859 1058 chr3L 20733827 20733840 chr3L 20733913 20733923 4 85 1.5 1.5 1.5 1.6 96 chr3L 20733827 intron CG13252 + chr3L 20733875 intron CG13252 + chr3L 20733923 intron CG13252 + chr3L_4_20730001 chr3L_20730001 RAL-859 1059 chr3L 20849271 20849301 chr3L 20849350 20849380 6 79 2.0 2.5 2.2 1.9 109 chr3L 20849271 intron CG32432 - chr3L 20849326 intron CG32432 - chr3L 20849380 intron CG32432 - chr3L_6_20845001 chr3L_20845001 RAL-859 1060 chr3L 20863607 20863625 chr3L 20863798 20863815 7 191 3.0 2.5 2.8 1.8 208 chr3L 20863607 intron CG32432 - chr3L 20863711 intron CG32432 - chr3L 20863815 intron CG32432 - chr3L_7_20860001 chr3L_20860001 RAL-859 1061 chr3L 20864644 20864676 chr3L 20864725 20864757 7 81 2.5 1.5 2.0 2.3 113 chr3L 20864644 intron CG32432 - chr3L 20864700 intron CG32432 - chr3L 20864757 intron CG32432 - chr3L_7_20860001 chr3L_20860001 RAL-859 1062 chr3L 20890490 20890522 chr3L 20890565 20890598 7 76 2.0 0.5 1.2 3.2 108 chr3L 20890490 intergenic not near genes chr3L 20890544 intergenic not near genes chr3L 20890598 intergenic not near genes chr3L_7_20890001 chr3L_20890001 RAL-859 1063 chr3L 20890911 20890943 chr3L 20891016 20891048 6 104 2.0 1.0 1.5 2.4 137 chr3L 20890911 intergenic not near genes chr3L 20890980 intergenic not near genes chr3L 20891048 intergenic not near genes chr3L_6_20890001 chr3L_20890001 RAL-859 1064 chr3L 20913748 20913782 chr3L 20913830 20913864 11 82 1.5 2.0 1.8 3.9 116 chr3L 20913748 intergenic CR43930 - chr3L 20913806 intergenic CR43930 - chr3L 20913864 intergenic CR43930 - chr3L_11_20910001 chr3L_20910001 RAL-859 1065 chr3L 21014921 21014938 chr3L 21023402 21023416 Tirant 6 8480 1.5 2.5 2.0 2.0 8495 chr3L 21014921 intron skd - chr3L 21019168 intron skd - chr3L 21023416 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-859 1066 chr3L 21057139 21057159 chr3L 21057355 21057375 5 216 0.5 0.5 0.5 3.3 236 chr3L 21057139 intron siz + chr3L 21057257 intron siz + chr3L 21057375 intron siz + chr3L_5_21055001 chr3L_21055001 RAL-859 1067 chr3L 21067954 21067977 chr3L 21068034 21068057 8 80 5.0 4.5 4.8 1.4 103 chr3L 21067954 intron siz + chr3L 21068006 intron siz + chr3L 21068057 intron siz + chr3L_8_21065001 chr3L_21065001 RAL-859 1068 chr3L 21082213 21082240 chr3L 21082291 21082318 6 78 1.0 3.0 2.0 2.0 105 chr3L 21082213 intron ko - chr3L 21082266 intron ko - chr3L 21082318 intron ko - chr3L_6_21080001 chr3L_21080001 RAL-859 1069 chr3L 21151863 21151892 chr3L 21156947 21156976 flea 7 5084 3.0 1.5 2.2 2.2 5113 chr3L 21151863 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156976 intron Ac78C - chr3L_7_21150001 chr3L_21150001 RAL-859 1070 chr3L 21275700 21275723 chr3L 21275947 21275970 6 247 2.0 1.0 1.5 2.4 270 chr3L 21275700 intron AcCoAS - chr3L 21275835 intron AcCoAS - chr3L 21275970 intron AcCoAS - chr3L_6_21275001 chr3L_21275001 RAL-859 1071 chr3L 21284943 21284972 chr3L 21285020 21285049 12 77 2.5 1.0 1.8 4.3 106 chr3L 21284943 intron CG12974 - chr3L 21284996 intron CG12974 - chr3L 21285049 intron CG12974 - chr3L_12_21280001 chr3L_21280001 RAL-859 1072 chr3L 21459870 21459880 chr3L 21459948 21459957 5 78 2.0 2.5 2.2 1.6 87 chr3L 21459870 intergenic not near genes chr3L 21459914 intergenic not near genes chr3L 21459957 intergenic not near genes chr3L_5_21455001 chr3L_21455001 RAL-859 1073 chr3L 21466125 21466134 chr3L 21466201 21466211 8 77 3.0 1.0 2.0 2.7 86 chr3L 21466125 intergenic not near genes chr3L 21466168 intergenic not near genes chr3L 21466211 intergenic not near genes chr3L_8_21465001 chr3L_21465001 RAL-859 1074 chr3L 21498837 21498865 chr3L 21500468 21500501 1360 8 1635 1.0 2.5 1.8 2.9 1664 chr3L 21498837 intron Glg1 - chr3L 21499669 intron Glg1 - chr3L 21500501 intron Glg1 - chr3L_8_21495001 chr3L_21495001 RAL-859 1075 chr3L 21649779 21649798 chr3L 21650003 21650022 10 224 2.0 2.0 2.0 3.3 243 chr3L 21649779 intron CG43980 + chr3L 21649900 intron CG43980 + chr3L 21650022 intron CG43980 + chr3L_10_21645001 chr3L_21645001 RAL-859 1076 chr3L 21736351 21736373 chr3L 21736552 21736574 8 201 0.0 4.5 2.2 2.5 223 chr3L 21736351 intergenic CR43888 + chr3L 21736462 intergenic CR43888 + chr3L 21736574 intergenic CR43888 + chr3L_8_21735001 chr3L_21735001 RAL-859 1077 chr3L 21749315 21749350 chr3L 21754475 21754509 Doc 7 5160 2.0 2.5 2.2 2.2 5194 chr3L 21749315 intron Syn1 - chr3L 21751912 intron Syn1 - chr3L 21754509 intron Syn1 - chr3L_7_21750001 chr3L_21750001 RAL-859 1078 chr3L 21769057 21769075 chr3L 21769144 21769162 4 87 1.0 2.5 1.8 1.4 105 chr3L 21769057 intron,intron Syn1 -,CG42689 + chr3L 21769110 intron,intron Syn1 -,CG42689 + chr3L 21769162 intron,intron Syn1 -,CG42689 + chr3L_4_21765001 chr3L_21765001 RAL-859 1079 chr3L 21776672 21776867 chr3L 21776758 21776971 5 97 3.0 1.0 2.0 1.7 299 chr3L 21776672 intron,intron CG42689 +,CG42552 + chr3L 21776822 intron,intron CG42689 +,CG42552 + chr3L 21776971 exon,intron CG42689 +,CG42552 + chr3L_5_21775001 chr3L_21775001 RAL-859 1080 chr3L 21886384 21886420 chr3L 21886466 21886503 4 83 2.0 0.0 1.0 2.0 119 chr3L 21886384 intron,intron mub +,CR43878 - chr3L 21886444 intron,intron mub +,CR43878 - chr3L 21886503 intron,intron mub +,CR43878 - chr3L_4_21885001 chr3L_21885001 RAL-859 1081 chr3L 21950339 21950352 chr3L 21950415 21950429 7 77 3.5 5.0 4.2 1.3 90 chr3L 21950339 exon CG7448 + chr3L 21950384 exon CG7448 + chr3L 21950429 intron CG7448 + chr3L_7_21950001 chr3L_21950001 RAL-859 1082 chr3L 21994438 21994454 chr3L 21994519 21994535 5 81 2.0 1.5 1.8 1.8 97 chr3L 21994438 intergenic not near genes chr3L 21994486 intergenic not near genes chr3L 21994535 intergenic not near genes chr3L_5_21990001 chr3L_21990001 RAL-859 1083 chr3L 22008856 22008880 chr3L 22008932 22008957 10 77 5.5 6.0 5.8 1.5 101 chr3L 22008856 intergenic not near genes chr3L 22008906 intergenic not near genes chr3L 22008957 intergenic not near genes chr3L_10_22005001 chr3L_22005001 RAL-859 1084 chr3L 22099686 22099709 chr3L 22105871 22105895 3S18 11 6186 4.0 3.5 3.8 2.3 6209 chr3L 22099686 intergenic not near genes chr3L 22102790 intergenic not near genes chr3L 22105895 intergenic not near genes chr3L_11_22100001 chr3L_22100001 RAL-859 1085 chr3L 22130504 22130521 chr3L 22130650 22130667 4 146 0.5 3.0 1.8 1.4 163 chr3L 22130504 intergenic not near genes chr3L 22130586 intergenic not near genes chr3L 22130667 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-859 1086 chr3L 22169456 22169488 chr3L 22169549 22169581 11 93 1.5 1.0 1.2 5.0 125 chr3L 22169456 intron olf413 + chr3L 22169518 intron olf413 + chr3L 22169581 intron olf413 + chr3L_11_22165001 chr3L_22165001 RAL-859 1087 chr3L 22271136 22271156 chr3L 22271263 22271283 7 127 2.5 3.0 2.8 1.8 147 chr3L 22271136 intron Csp + chr3L 22271210 intron Csp + chr3L 22271283 intron Csp + chr3L_7_22270001 chr3L_22270001 RAL-859 1088 chr3L 22275647 22275672 chr3L 22275842 22275867 6 195 2.0 3.5 2.8 1.6 220 chr3L 22275647 intron srpk79D + chr3L 22275757 intron srpk79D + chr3L 22275867 intron srpk79D + chr3L_6_22275001 chr3L_22275001 RAL-859 1089 chr3L 22328066 22328092 chr3L 22328164 22328191 9 98 2.5 3.5 3.0 2.2 125 chr3L 22328066 intron Ten-m - chr3L 22328128 intron Ten-m - chr3L 22328191 intron Ten-m - chr3L_9_22325001 chr3L_22325001 RAL-859 1090 chr3L 22447207 22447232 chr3L 22447296 22447323 9 91 1.5 2.5 2.0 3.0 116 chr3L 22447207 intergenic not near genes chr3L 22447265 intergenic not near genes chr3L 22447323 intergenic not near genes chr3L_9_22445001 chr3L_22445001 RAL-859 1091 chr3L 22450265 22450296 chr3L 22450366 22450397 11 100 2.0 1.0 1.5 4.4 132 chr3L 22450265 intergenic not near genes chr3L 22450331 intergenic not near genes chr3L 22450397 intergenic not near genes chr3L_11_22450001 chr3L_22450001 RAL-859 1092 chr3L 22477055 22477085 chr3L 22477146 22477176 4 91 0.5 3.0 1.8 1.4 121 chr3L 22477055 intergenic not near genes chr3L 22477116 intergenic not near genes chr3L 22477176 intergenic not near genes chr3L_4_22475001 chr3L_22475001 RAL-859 1093 chr3L 22514766 22514797 chr3L 22514933 22514964 8 167 1.5 1.5 1.5 3.2 198 chr3L 22514766 intergenic not near genes chr3L 22514865 intergenic not near genes chr3L 22514964 intergenic not near genes chr3L_8_22510001 chr3L_22510001 RAL-859 1094 chr3L 22555773 22555800 chr3L 22563243 22563270 blood 8 7469 2.0 1.5 1.8 2.9 7497 chr3L 22555773 intergenic not near genes chr3L 22559522 intergenic not near genes chr3L 22563270 intergenic not near genes chr3L_8_22555001 chr3L_22555001 RAL-859 1095 chr3L 22577627 22577644 chr3L 22582415 22582432 Doc 6 4788 4.5 4.5 4.5 1.1 4805 chr3L 22577627 intergenic not near genes chr3L 22580030 intergenic not near genes chr3L 22582432 3` UTR CG14459 - chr3L_6_22580001 chr3L_22580001 RAL-859 1096 chr3L 22617193 22617206 chr3L 22624645 22624658 blood 10 7452 5.5 3.0 4.2 1.9 7465 chr3L 22617193 intron CG14459 - chr3L 22620926 intron CG14459 - chr3L 22624658 intron CG14459 - chr3L_10_22620001 chr3L_22620001 RAL-859 1097 chr3L 22761387 22761413 chr3L 22766820 22766847 Ivk 5 5434 3.0 3.0 3.0 1.2 5460 chr3L 22761387 intron SPoCk + chr3L 22764117 intron SPoCk + chr3L 22766847 intron SPoCk + chr3L_5_22760001 chr3L_22760001 RAL-859 1098 chr3L 22786073 22786098 chr3L 22788510 22788535 5 2437 12.0 17.5 14.8 0.3 2462 chr3L 22786073 3` UTR SPoCk + chr3L 22787304 3` UTR SPoCk + chr3L 22788535 exon CG14448 + chr3L_5_22785001 chr3L_22785001 RAL-859 1099 chr3L 22853471 22853715 chr3L 22853558 22853801 20 86 1.0 5.0 3.0 5.0 330 chr3L 22853471 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853801 5` UTR CR43426 + chr3L_20_22850001 chr3L_22850001 RAL-859 1100 chr3L 19220632 19220638 chr3L 22908066 22908066 6 3687432 16.0 11.0 13.5 0.4 3687434 chr3L 19220632 intron fz2 - chr3L 21064349 intron siz + chr3L 22908066 intergenic not near genes chr3L_6_21060001 chr3L_21060001 RAL-859 1101 chr3L 19220633 19220636 chr3L 22908067 22908067 6 3687432 16.0 11.0 13.5 0.4 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_6_21060001 chr3L_21060001 RAL-859 1102 chr3L 22980575 22980596 chr3L 22980660 22980681 10 84 5.0 1.0 3.0 2.5 106 chr3L 22980575 intergenic not near genes chr3L 22980628 intergenic not near genes chr3L 22980681 intergenic not near genes chr3L_10_22980001 chr3L_22980001 RAL-859 1103 chr3L 22989879 22989887 chr3L 22996853 22996861 297 4 6974 2.0 2.0 2.0 1.3 6982 chr3L 22989879 intergenic not near genes chr3L 22993370 intergenic not near genes chr3L 22996861 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-859 1104 chr3L 23182260 23182294 chr3L 23182374 23182408 10 114 3.5 4.5 4.0 2.0 148 chr3L 23182260 intron CG34031 + chr3L 23182334 intron CG34031 + chr3L 23182408 intron CG34031 + chr3L_10_23180001 chr3L_23180001 RAL-859 1105 chr3L 24149551 24149574 chr3L 24149651 24149675 7 101 2.0 1.5 1.8 2.5 124 chr3L 24149551 intron Snap25 + chr3L 24149613 intron Snap25 + chr3L 24149675 intron Snap25 + chr3L_7_24145001 chr3L_24145001 RAL-859 1106 chr3L 24168789 24168816 chr3L 24176116 24176144 ZAM 7 7328 3.0 3.0 3.0 1.8 7355 chr3L 24168789 intron Snap25 + chr3L 24172466 intron Snap25 + chr3L 24176144 intron Snap25 + chr3L_7_24170001 chr3L_24170001 RAL-859 1107 chr3L 25331640 25331650 chr3L 25331730 25331739 6 90 1.5 2.0 1.8 2.1 99 chr3L 25331640 intergenic not near genes chr3L 25331690 intergenic not near genes chr3L 25331739 intergenic not near genes chr3L_6_25330001 chr3L_25330001 RAL-859 1108 chr3L 26290092 26290130 chr3L 26290263 26290300 4 171 1.5 2.0 1.8 1.4 208 chr3L 26290092 intergenic not near genes chr3L 26290196 intergenic not near genes chr3L 26290300 intergenic not near genes chr3L_4_26290001 chr3L_26290001 RAL-859 1109 chr3R 2534136 2534167 chr3R 2541705 2541736 8 7569 6.0 9.5 7.8 0.9 7600 chr3R 2534136 intergenic not near genes chr3R 2537936 intergenic not near genes chr3R 2541736 intergenic not near genes chr3R_8_2535001 chr3R_2535001 RAL-859 1110 chr3R 4206069 4206094 chr3R 4211644 4211669 mdg3 4 5575 2.0 1.5 1.8 1.4 5600 chr3R 4206069 intron CG14636 - chr3R 4208869 intron CG14636 - chr3R 4211669 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-859 1111 chr3R 4366761 4366790 chr3R 4375144 4375173 roo 7 8383 2.5 3.0 2.8 1.8 8412 chr3R 4366761 3` UTR CG1090 + chr3R 4370967 intergenic not near genes chr3R 4375173 5` UTR CR44922 + chr3R_7_4370001 chr3R_4370001 RAL-859 1112 chr3R 4408413 4408442 chr3R 4412717 4412743 Juan 7 4303 1.5 3.0 2.2 2.2 4330 chr3R 4408413 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412743 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-859 1113 chr3R 4576538 4576557 chr3R 4576654 4576673 4 116 1.5 2.5 2.0 1.3 135 chr3R 4576538 intergenic not near genes chr3R 4576606 intergenic not near genes chr3R 4576673 intergenic not near genes chr3R_4_4575001 chr3R_4575001 RAL-859 1114 chr3R 4609545 4609582 chr3R 4610709 4610746 1360 12 1164 2.0 3.0 2.5 3.4 1201 chr3R 4609545 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610746 intergenic not near genes chr3R_12_4610001 chr3R_4610001 RAL-859 1115 chr3R 4733679 4733704 chr3R 4733801 4733828 5 124 2.5 2.0 2.2 1.6 149 chr3R 4733679 intergenic not near genes chr3R 4733754 intergenic not near genes chr3R 4733828 intergenic not near genes chr3R_5_4730001 chr3R_4730001 RAL-859 1116 chr3R 4753249 4753269 chr3R 4757552 4757572 F-element 7 4302 4.5 6.0 5.2 1.1 4323 chr3R 4753249 intron,intron atms +,CG44098 - chr3R 4755410 intron,intron atms +,CG44098 - chr3R 4757572 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-859 1117 chr3R 4796117 4796148 chr3R 4796240 4796271 7 123 2.5 4.0 3.2 1.7 154 chr3R 4796117 intron ctrip - chr3R 4796194 intron ctrip - chr3R 4796271 intron ctrip - chr3R_7_4795001 chr3R_4795001 RAL-859 1118 chr3R 4861570 4861598 chr3R 4861651 4861679 11 81 3.0 5.5 4.2 2.1 109 chr3R 4861570 intron opa + chr3R 4861624 intron opa + chr3R 4861679 intron opa + chr3R_11_4860001 chr3R_4860001 RAL-859 1119 chr3R 4887482 4887506 chr3R 4894858 4894883 rover 5 7376 0.5 2.0 1.2 2.3 7401 chr3R 4887482 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894883 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-859 1120 chr3R 4922348 4922362 chr3R 4922426 4922441 6 79 0.5 1.5 1.0 3.0 93 chr3R 4922348 intron Cdep + chr3R 4922394 intron Cdep + chr3R 4922441 intron Cdep + chr3R_6_4920001 chr3R_4920001 RAL-859 1121 chr3R 4943612 4943621 chr3R 4943717 4943726 5 105 5.0 3.0 4.0 1.0 114 chr3R 4943612 intron Cdep + chr3R 4943669 intron Cdep + chr3R 4943726 intron Cdep + chr3R_5_4940001 chr3R_4940001 RAL-859 1122 chr3R 4966011 4966033 chr3R 4966101 4966125 8 92 1.0 2.5 1.8 2.9 114 chr3R 4966011 intron CG1124 + chr3R 4966068 intron CG1124 + chr3R 4966125 intron CG1124 + chr3R_8_4965001 chr3R_4965001 RAL-859 1123 chr3R 5045845 5045858 chr3R 5052947 5052960 HMS-Beagle 5 7102 3.5 1.5 2.5 1.4 7115 chr3R 5045845 intron CR43635 - chr3R 5049402 intergenic not near genes chr3R 5052960 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-859 1124 chr3R 5067985 5068005 chr3R 5073502 5073522 mdg3 7 5517 4.0 1.0 2.5 2.0 5537 chr3R 5067985 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073522 intergenic not near genes chr3R_7_5070001 chr3R_5070001 RAL-859 1125 chr3R 5088679 5088715 chr3R 5088764 5088800 9 85 2.5 1.5 2.0 3.0 121 chr3R 5088679 intergenic not near genes chr3R 5088740 intergenic not near genes chr3R 5088800 intergenic not near genes chr3R_9_5085001 chr3R_5085001 RAL-859 1126 chr3R 5107205 5107236 chr3R 5107371 5107402 6 166 1.0 1.0 1.0 3.0 197 chr3R 5107205 intergenic not near genes chr3R 5107304 intergenic not near genes chr3R 5107402 intergenic not near genes chr3R_6_5105001 chr3R_5105001 RAL-859 1127 chr3R 5136150 5136169 chr3R 5136240 5136259 6 90 6.5 2.5 4.5 1.1 109 chr3R 5136150 intergenic not near genes chr3R 5136204 intergenic not near genes chr3R 5136259 intergenic not near genes chr3R_6_5135001 chr3R_5135001 RAL-859 1128 chr3R 5158143 5158175 chr3R 5158236 5158267 10 93 1.5 5.0 3.2 2.4 124 chr3R 5158143 intron dpr16 + chr3R 5158205 intron dpr16 + chr3R 5158267 intron dpr16 + chr3R_10_5155001 chr3R_5155001 RAL-859 1129 chr3R 5278087 5278121 chr3R 5278168 5278201 9 81 1.0 3.5 2.2 2.8 114 chr3R 5278087 intron mtd - chr3R 5278144 intron mtd - chr3R 5278201 intron mtd - chr3R_9_5275001 chr3R_5275001 RAL-859 1130 chr3R 5292400 5292434 chr3R 5292477 5292511 9 77 2.5 3.5 3.0 2.2 111 chr3R 5292400 intron mtd - chr3R 5292456 intron mtd - chr3R 5292511 intron mtd - chr3R_9_5290001 chr3R_5290001 RAL-859 1131 chr3R 5315835 5315871 chr3R 5315922 5315955 13 86 2.5 1.0 1.8 4.6 120 chr3R 5315835 intron mtd - chr3R 5315895 intron mtd - chr3R 5315955 intron mtd - chr3R_13_5315001 chr3R_5315001 RAL-859 1132 chr3R 5338397 5338429 chr3R 5343574 5343606 Rt1c 18 5177 4.0 4.0 4.0 3.6 5209 chr3R 5338397 intron mtd - chr3R 5341002 intron mtd - chr3R 5343606 intron mtd - chr3R_18_5340001 chr3R_5340001 RAL-859 1133 chr3R 5445963 5445992 chr3R 5452423 5452452 Burdock 6 6460 2.0 1.5 1.8 2.1 6489 chr3R 5445963 intron CG14669 + chr3R 5449208 intron CG14669 + chr3R 5452452 intron CG14669 + chr3R_6_5445001 chr3R_5445001 RAL-859 1134 chr3R 5712085 5712108 chr3R 5712173 5712195 6 88 2.5 1.5 2.0 2.0 110 chr3R 5712085 3` UTR plx + chr3R 5712140 3` UTR plx + chr3R 5712195 3` UTR plx + chr3R_6_5710001 chr3R_5710001 RAL-859 1135 chr3R 5746017 5746046 chr3R 5746258 5746287 pogo 6 241 3.5 4.0 3.8 1.2 270 chr3R 5746017 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746287 3` UTR Madm + chr3R_6_5745001 chr3R_5745001 RAL-859 1136 chr3R 5747011 5747048 chr3R 5753202 5753239 diver 7 6191 1.5 2.5 2.0 2.3 6228 chr3R 5747011 intergenic Madm + chr3R 5750125 intergenic not near genes chr3R 5753239 intergenic CG2091 - chr3R_7_5750001 chr3R_5750001 RAL-859 1137 chr3R 5772377 5772404 chr3R 5772535 5772562 9 158 0.5 1.5 1.0 4.5 185 chr3R 5772377 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772562 intron CG2082 - chr3R_9_5770001 chr3R_5770001 RAL-859 1138 chr3R 5809119 5809144 chr3R 5809360 5809385 pogo 6 241 0.0 2.0 1.0 3.0 266 chr3R 5809119 3` UTR CG11000 + chr3R 5809252 3` UTR CG11000 + chr3R 5809385 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-859 1139 chr3R 5822383 5822412 chr3R 5823550 5823579 1360 7 1167 0.0 1.0 0.5 4.7 1196 chr3R 5822383 3` UTR CG2023 - chr3R 5822981 3` UTR CG2023 - chr3R 5823579 3` UTR CG2023 - chr3R_7_5820001 chr3R_5820001 RAL-859 1140 chr3R 5880791 5880820 chr3R 5881137 5881166 9 346 2.5 1.5 2.0 3.0 375 chr3R 5880791 intron CG34113 - chr3R 5880978 intron CG34113 - chr3R 5881166 intron CG34113 - chr3R_9_5880001 chr3R_5880001 RAL-859 1141 chr3R 5895956 5895989 chr3R 5896170 5896203 4 214 1.0 1.0 1.0 2.0 247 chr3R 5895956 intron CG34113 - chr3R 5896080 intron CG34113 - chr3R 5896203 intron CG34113 - chr3R_4_5895001 chr3R_5895001 RAL-859 1142 chr3R 5896966 5896997 chr3R 5897325 5897356 5 359 1.0 1.5 1.2 2.3 390 chr3R 5896966 intron CG34113 - chr3R 5897161 intron CG34113 - chr3R 5897356 intron CG34113 - chr3R_5_5895001 chr3R_5895001 RAL-859 1143 chr3R 5927565 5927586 chr3R 5927805 5927826 pogo 7 240 3.0 1.5 2.2 2.2 261 chr3R 5927565 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927826 intron CG34113 - chr3R_7_5925001 chr3R_5925001 RAL-859 1144 chr3R 6015960 6015995 chr3R 6024441 6024476 Tirant 8 8479 0.5 2.5 1.5 3.2 8516 chr3R 6015960 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-859 1145 chr3R 6104359 6104388 chr3R 6104481 6104510 11 122 3.0 0.5 1.8 3.9 151 chr3R 6104359 intron CR44929 - chr3R 6104434 intron CR44929 - chr3R 6104510 intron CR44929 - chr3R_11_6100001 chr3R_6100001 RAL-859 1146 chr3R 6121164 6121187 chr3R 6121382 6121404 BS 4 218 0.0 1.5 0.8 2.2 240 chr3R 6121164 intergenic not near genes chr3R 6121284 intergenic not near genes chr3R 6121404 intergenic not near genes chr3R_4_6120001 chr3R_6120001 RAL-859 1147 chr3R 6158515 6158542 chr3R 6167095 6167125 Tirant 5 8582 3.0 2.5 2.8 1.3 8610 chr3R 6158515 intergenic not near genes chr3R 6162820 intergenic not near genes chr3R 6167125 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-859 1148 chr3R 6175190 6175201 chr3R 6182462 6182473 HMS-Beagle2 4 7272 3.5 1.5 2.5 1.1 7283 chr3R 6175190 intergenic Osi1 + chr3R 6178832 intron CR45194 + chr3R 6182473 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-859 1149 chr3R 6194950 6194980 chr3R 6195030 6195060 13 80 2.0 3.5 2.8 3.4 110 chr3R 6194950 3` UTR NPFR + chr3R 6195005 3` UTR NPFR + chr3R 6195060 3` UTR NPFR + chr3R_13_6195001 chr3R_6195001 RAL-859 1150 chr3R 6199208 6199237 chr3R 6201033 6201063 7 1825 15.5 20.5 18.0 0.4 1855 chr3R 6199208 5` UTR Osi24 + chr3R 6200136 intron Osi24 + chr3R 6201063 intron Osi24 + chr3R_7_6200001 chr3R_6200001 RAL-859 1151 chr3R 6334788 6334809 chr3R 6334886 6334907 5 98 0.0 2.0 1.0 2.5 119 chr3R 6334788 intergenic not near genes chr3R 6334848 intergenic not near genes chr3R 6334907 intergenic Osi19 + chr3R_5_6330001 chr3R_6330001 RAL-859 1152 chr3R 6484061 6484090 chr3R 6484154 6484183 7 93 2.0 0.5 1.2 3.2 122 chr3R 6484061 intron CG15186 + chr3R 6484122 intron CG15186 + chr3R 6484183 intron CG15186 + chr3R_7_6480001 chr3R_6480001 RAL-859 1153 chr3R 6496669 6496685 chr3R 6496757 6496773 5 88 2.5 4.0 3.2 1.2 104 chr3R 6496669 intergenic not near genes chr3R 6496721 intergenic not near genes chr3R 6496773 intergenic not near genes chr3R_5_6495001 chr3R_6495001 RAL-859 1154 chr3R 6510024 6510055 chr3R 6515105 6515134 jockey 7 5081 2.0 3.5 2.8 1.8 5110 chr3R 6510024 intergenic not near genes chr3R 6512579 intergenic not near genes chr3R 6515134 intergenic not near genes chr3R_7_6510001 chr3R_6510001 RAL-859 1155 chr3R 6519112 6519136 chr3R 6519219 6519244 4 108 2.5 1.0 1.8 1.4 132 chr3R 6519112 intergenic not near genes chr3R 6519178 intergenic not near genes chr3R 6519244 intergenic not near genes chr3R_4_6515001 chr3R_6515001 RAL-859 1156 chr3R 6610047 6610060 chr3R 6610199 6610212 7 152 3.5 1.0 2.2 2.2 165 chr3R 6610047 intergenic not near genes chr3R 6610130 intergenic not near genes chr3R 6610212 intergenic not near genes chr3R_7_6610001 chr3R_6610001 RAL-859 1157 chr3R 6624262 6624279 chr3R 6624344 6624361 4 82 2.5 0.5 1.5 1.6 99 chr3R 6624262 intergenic not near genes chr3R 6624312 intergenic not near genes chr3R 6624361 intergenic not near genes chr3R_4_6620001 chr3R_6620001 RAL-859 1158 chr3R 6639911 6639920 chr3R 6639989 6639998 4 77 4.5 0.0 2.2 1.2 87 chr3R 6639911 intergenic not near genes chr3R 6639954 intergenic not near genes chr3R 6639998 intergenic not near genes chr3R_4_6635001 chr3R_6635001 RAL-859 1159 chr3R 6655762 6655796 chr3R 6656034 6656068 11 272 2.5 2.0 2.2 3.4 306 chr3R 6655762 exon Taf1 + chr3R 6655915 3` UTR Taf1 + chr3R 6656068 intergenic Taf1 +,CG1307 - chr3R_11_6655001 chr3R_6655001 RAL-859 1160 chr3R 6663606 6663632 chr3R 6663686 6663712 6 80 3.0 1.5 2.2 1.9 106 chr3R 6663606 intron lab - chr3R 6663659 intron lab - chr3R 6663712 intron lab - chr3R_6_6660001 chr3R_6660001 RAL-859 1161 chr3R 6670566 6670603 chr3R 6670675 6670712 11 109 0.5 1.5 1.0 5.5 146 chr3R 6670566 intron lab - chr3R 6670639 intron lab - chr3R 6670712 intron lab - chr3R_11_6670001 chr3R_6670001 RAL-859 1162 chr3R 6737497 6737532 chr3R 6739284 6739317 Doc 9 1786 2.0 1.5 1.8 3.2 1820 chr3R 6737497 intron pb - chr3R 6738407 intron pb - chr3R 6739317 intron pb - chr3R_9_6735001 chr3R_6735001 RAL-859 1163 chr3R 6741005 6741023 chr3R 6741088 6741106 4 82 1.5 0.5 1.0 2.0 101 chr3R 6741005 intron pb - chr3R 6741056 intron pb - chr3R 6741106 intron pb - chr3R_4_6740001 chr3R_6740001 RAL-859 1164 chr3R 6819631 6819656 chr3R 6819715 6819740 5 84 1.0 2.0 1.5 2.0 109 chr3R 6819631 intergenic not near genes chr3R 6819686 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R 6819740 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R_5_6815001 chr3R_6815001 RAL-859 1165 chr3R 6914738 6914773 chr3R 6914839 6914874 9 101 2.5 5.5 4.0 1.8 136 chr3R 6914738 intron Antp - chr3R 6914806 intron Antp - chr3R 6914874 intron Antp - chr3R_9_6910001 chr3R_6910001 RAL-859 1166 chr3R 6958930 6958954 chr3R 6959141 6959163 9 211 1.5 2.5 2.0 3.0 233 chr3R 6958930 intron Antp - chr3R 6959046 intron Antp - chr3R 6959163 intron Antp - chr3R_9_6955001 chr3R_6955001 RAL-859 1167 chr3R 7092791 7092817 chr3R 7093355 7093381 8 564 1.0 4.5 2.8 2.1 590 chr3R 7092791 3` UTR CR43685 - chr3R 7093086 intron CR43685 - chr3R 7093381 3` UTR CR43685 - chr3R_8_7090001 chr3R_7090001 RAL-859 1168 chr3R 7126515 7126528 chr3R 7126610 7126622 4 95 1.5 2.0 1.8 1.4 107 chr3R 7126515 3` UTR CG10068 - chr3R 7126568 3` UTR CG10068 - chr3R 7126622 3` UTR CG10068 - chr3R_4_7125001 chr3R_7125001 RAL-859 1169 chr3R 7173678 7173706 chr3R 7173758 7173786 8 80 1.5 0.5 1.0 4.0 108 chr3R 7173678 intron sas + chr3R 7173732 intron sas + chr3R 7173786 intron sas + chr3R_8_7170001 chr3R_7170001 RAL-859 1170 chr3R 7402179 7402205 chr3R 7402284 7402311 4 105 0.5 2.0 1.2 1.8 132 chr3R 7402179 intergenic not near genes chr3R 7402245 intergenic not near genes chr3R 7402311 intergenic not near genes chr3R_4_7400001 chr3R_7400001 RAL-859 1171 chr3R 7404947 7404970 chr3R 7405023 7405046 4 76 0.0 0.0 0.0 4.0 99 chr3R 7404947 intergenic not near genes chr3R 7404996 intergenic not near genes chr3R 7405046 intergenic not near genes chr3R_4_7400001 chr3R_7400001 RAL-859 1172 chr3R 7621553 7621561 chr3R 7621643 7621650 4 90 2.5 5.5 4.0 0.8 97 chr3R 7621553 intron CG34127 - chr3R 7621602 intron CG34127 - chr3R 7621650 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-859 1173 chr3R 7639792 7639813 chr3R 7639933 7639954 4 141 0.5 5.0 2.8 1.1 162 chr3R 7639792 intergenic CG34127 - chr3R 7639873 intergenic CG34127 - chr3R 7639954 intergenic not near genes chr3R_4_7635001 chr3R_7635001 RAL-859 1174 chr3R 7660785 7660800 chr3R 7660875 7660886 7 89 3.5 1.5 2.5 2.0 101 chr3R 7660785 intron Nlg1 + chr3R 7660836 intron Nlg1 + chr3R 7660886 intron Nlg1 + chr3R_7_7660001 chr3R_7660001 RAL-859 1175 chr3R 7694575 7694608 chr3R 7713636 7713669 invader3 5 19061 1.5 2.5 2.0 1.7 19094 chr3R 7694575 3` UTR Nlg1 + chr3R 7704122 intergenic not near genes chr3R 7713669 intergenic not near genes chr3R_5_7700001 chr3R_7700001 RAL-859 1176 chr3R 7729470 7729489 chr3R 7737408 7737427 Stalker2 5 7938 3.5 3.0 3.2 1.2 7957 chr3R 7729470 intergenic not near genes chr3R 7733448 intergenic not near genes chr3R 7737427 intergenic not near genes chr3R_5_7730001 chr3R_7730001 RAL-859 1177 chr3R 7809920 7809949 chr3R 7809999 7810028 8 79 3.5 2.0 2.8 2.1 108 chr3R 7809920 5` UTR CG2993 - chr3R 7809974 5` UTR CG2993 - chr3R 7810028 intergenic CG2993 - chr3R_8_7805001 chr3R_7805001 RAL-859 1178 chr3R 8013890 8013914 chr3R 8022854 8022878 5 8964 24.5 28.0 26.2 0.2 8988 chr3R 8013890 exon Pbp95 + chr3R 8018384 exon CG2747 - chr3R 8022878 exon CG2747 - chr3R_5_8015001 chr3R_8015001 RAL-859 1179 chr3R 8090273 8090292 chr3R 8090450 8090469 6 177 1.5 2.5 2.0 2.0 196 chr3R 8090273 5` UTR CR44330 + chr3R 8090371 intergenic CR44330 + chr3R 8090469 intergenic CR44330 + chr3R_6_8090001 chr3R_8090001 RAL-859 1180 chr3R 8094412 8094441 chr3R 8099717 8099746 Transpac 6 5305 3.0 4.0 3.5 1.3 5334 chr3R 8094412 intron CG7900 + chr3R 8097079 intron CG7900 + chr3R 8099746 intron CG7900 + chr3R_6_8095001 chr3R_8095001 RAL-859 1181 chr3R 8207558 8207587 chr3R 8208402 8208431 F-element 8 844 0.5 2.0 1.2 3.6 873 chr3R 8207558 intergenic not near genes chr3R 8207994 intergenic not near genes chr3R 8208431 intergenic not near genes chr3R_8_8205001 chr3R_8205001 RAL-859 1182 chr3R 8339243 8339246 chr3R 21907534 21907535 7 13568289 6.0 16.5 11.2 0.6 13568292 chr3R 8339243 intergenic not near genes chr3R 15123389 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-859 1183 chr3R 8339247 8339247 chr3R 21907535 21907536 6 13568288 6.0 16.5 11.2 0.5 13568289 chr3R 8339247 intergenic not near genes chr3R 15123392 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-859 1184 chr3R 8375136 8375164 chr3R 8375220 8375248 10 84 2.0 3.0 2.5 2.9 112 chr3R 8375136 intron CG45263 - chr3R 8375192 intron CG45263 - chr3R 8375248 intron CG45263 - chr3R_10_8375001 chr3R_8375001 RAL-859 1185 chr3R 8403024 8403040 chr3R 8412190 8412202 roo 6 9165 3.0 7.0 5.0 1.0 9178 chr3R 8403024 intron CG45263 - chr3R 8407613 intron CG45263 - chr3R 8412202 intron CG45263 - chr3R_6_8405001 chr3R_8405001 RAL-859 1186 chr3R 8472023 8472052 chr3R 8472376 8472403 7 353 1.5 1.5 1.5 2.8 380 chr3R 8472023 intron CG45263 - chr3R 8472213 intron CG45263 - chr3R 8472403 intron CG45263 - chr3R_7_8470001 chr3R_8470001 RAL-859 1187 chr3R 8552366 8552402 chr3R 8552446 8552482 7 80 2.0 3.5 2.8 1.8 116 chr3R 8552366 intergenic Or85d + chr3R 8552424 intergenic Or85d + chr3R 8552482 intergenic Or85d + chr3R_7_8550001 chr3R_8550001 RAL-859 1188 chr3R 8614793 8614813 chr3R 8614996 8615016 7 203 0.5 2.0 1.2 3.2 223 chr3R 8614793 intron 5-HT2B + chr3R 8614904 intron 5-HT2B + chr3R 8615016 intron 5-HT2B + chr3R_7_8610001 chr3R_8610001 RAL-859 1189 chr3R 8621545 8621555 chr3R 8621622 8621630 4 76 3.5 1.5 2.5 1.1 85 chr3R 8621545 intron 5-HT2B + chr3R 8621588 intron 5-HT2B + chr3R 8621630 intron 5-HT2B + chr3R_4_8620001 chr3R_8620001 RAL-859 1190 chr3R 8639691 8639716 chr3R 8639773 8639797 8 81 1.0 3.0 2.0 2.7 106 chr3R 8639691 intergenic not near genes chr3R 8639744 intergenic not near genes chr3R 8639797 intergenic not near genes chr3R_8_8635001 chr3R_8635001 RAL-859 1191 chr3R 8758473 8758485 chr3R 8758564 8758576 5 91 4.5 0.0 2.2 1.6 103 chr3R 8758473 intron,intron CG11768 -,CG34135 - chr3R 8758524 intron,intron CG11768 -,CG34135 - chr3R 8758576 intron,intron CG11768 -,CG34135 - chr3R_5_8755001 chr3R_8755001 RAL-859 1192 chr3R 8979890 8979913 chr3R 8979973 8979996 4 83 2.0 3.0 2.5 1.1 106 chr3R 8979890 intergenic not near genes chr3R 8979943 intergenic not near genes chr3R 8979996 intergenic not near genes chr3R_4_8975001 chr3R_8975001 RAL-859 1193 chr3R 9043743 9043763 chr3R 9043831 9043851 4 88 1.5 2.0 1.8 1.4 108 chr3R 9043743 intron Nmdmc - chr3R 9043797 intron Nmdmc - chr3R 9043851 intron Nmdmc - chr3R_4_9040001 chr3R_9040001 RAL-859 1194 chr3R 9082049 9082068 chr3R 9082143 9082162 6 94 2.5 3.5 3.0 1.5 113 chr3R 9082049 intron pum - chr3R 9082106 intron pum - chr3R 9082162 intron pum - chr3R_6_9080001 chr3R_9080001 RAL-859 1195 chr3R 9108867 9108883 chr3R 9108943 9108958 4 76 1.0 1.0 1.0 2.0 91 chr3R 9108867 intron pum - chr3R 9108912 intron pum - chr3R 9108958 intron pum - chr3R_4_9105001 chr3R_9105001 RAL-859 1196 chr3R 9118876 9118898 chr3R 9119233 9119254 5 356 2.5 1.5 2.0 1.7 378 chr3R 9118876 intron pum - chr3R 9119065 intron pum - chr3R 9119254 intron pum - chr3R_5_9115001 chr3R_9115001 RAL-859 1197 chr3R 9141141 9141169 chr3R 9141225 9141253 8 84 0.0 2.5 1.2 3.6 112 chr3R 9141141 intron pum - chr3R 9141197 intron pum - chr3R 9141253 intron pum - chr3R_8_9140001 chr3R_9140001 RAL-859 1198 chr3R 9204262 9204280 chr3R 9204349 9204365 6 86 3.5 3.5 3.5 1.3 103 chr3R 9204262 intron pum - chr3R 9204314 intron pum - chr3R 9204365 intron pum - chr3R_6_9200001 chr3R_9200001 RAL-859 1199 chr3R 9278784 9278816 chr3R 9284044 9284076 Rt1a 7 5260 0.0 4.0 2.0 2.3 5292 chr3R 9278784 intergenic not near genes chr3R 9281430 intergenic not near genes chr3R 9284076 intergenic not near genes chr3R_7_9280001 chr3R_9280001 RAL-859 1200 chr3R 9361816 9361847 chr3R 9362057 9362088 pogo 7 241 4.0 0.5 2.2 2.2 272 chr3R 9361816 3` UTR CG45050 + chr3R 9361952 3` UTR CG45050 + chr3R 9362088 3` UTR CG45050 + chr3R_7_9360001 chr3R_9360001 RAL-859 1201 chr3R 9390546 9390564 chr3R 9390630 9390648 9 84 1.0 1.5 1.2 4.1 102 chr3R 9390546 intron FER - chr3R 9390597 intron FER - chr3R 9390648 intron FER - chr3R_9_9390001 chr3R_9390001 RAL-859 1202 chr3R 9425898 9425905 chr3R 9426071 9426076 6 173 4.5 3.0 3.8 1.2 178 chr3R 9425898 intron ps + chr3R 9425987 intron ps + chr3R 9426076 intron ps + chr3R_6_9425001 chr3R_9425001 RAL-859 1203 chr3R 9524023 9524047 chr3R 9524111 9524135 8 88 0.5 2.5 1.5 3.2 112 chr3R 9524023 intron CG8176 + chr3R 9524079 intron CG8176 + chr3R 9524135 intron CG8176 + chr3R_8_9520001 chr3R_9520001 RAL-859 1204 chr3R 9549049 9549057 chr3R 9549153 9549162 5 105 4.0 4.5 4.2 1.0 113 chr3R 9549049 intron,3` UTR mura -,CR42549 - chr3R 9549106 intron,3` UTR mura -,CR42549 - chr3R 9549162 intron,3` UTR mura -,CR42549 - chr3R_5_9545001 chr3R_9545001 RAL-859 1205 chr3R 9620956 9620956 chr3R 21907534 21907536 4 12286580 4.0 16.5 10.2 0.4 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-859 1206 chr3R 9699973 9700004 chr3R 9700062 9700093 1360 8 89 2.5 0.5 1.5 3.2 120 chr3R 9699973 intron Unc-115a - chr3R 9700033 intron Unc-115a - chr3R 9700093 intron Unc-115a - chr3R_8_9700001 chr3R_9700001 RAL-859 1207 chr3R 9898788 9898818 chr3R 9898879 9898910 4 92 1.5 3.0 2.2 1.2 122 chr3R 9898788 intron Glut4EF + chr3R 9898849 intron Glut4EF + chr3R 9898910 intron Glut4EF + chr3R_4_9895001 chr3R_9895001 RAL-859 1208 chr3R 10140429 10140466 chr3R 10140519 10140557 6 90 0.5 0.0 0.2 5.0 128 chr3R 10140429 3` UTR TAF1B - chr3R 10140493 3` UTR TAF1B - chr3R 10140557 3` UTR TAF1B - chr3R_6_10140001 chr3R_10140001 RAL-859 1209 chr3R 10255381 10255383 chr3R 10260821 10260823 I-element 5 5440 4.0 3.0 3.5 1.1 5442 chr3R 10255381 exon Sirt6 - chr3R 10258102 intron Sirt6 - chr3R 10260823 exon Sirt6 - chr3R_5_10255001 chr3R_10255001 RAL-859 1210 chr3R 10270256 10270283 chr3R 10270333 10270357 7 76 1.5 3.5 2.5 2.0 101 chr3R 10270256 intron CG43143 + chr3R 10270306 intron CG43143 + chr3R 10270357 intron CG43143 + chr3R_7_10270001 chr3R_10270001 RAL-859 1211 chr3R 10275558 10275574 chr3R 10275635 10275651 4 77 0.5 1.5 1.0 2.0 93 chr3R 10275558 intron CG43143 + chr3R 10275604 intron CG43143 + chr3R 10275651 intron CG43143 + chr3R_4_10275001 chr3R_10275001 RAL-859 1212 chr3R 10593429 10593462 chr3R 10593516 10593547 4 85 2.0 0.0 1.0 2.0 118 chr3R 10593429 intron hth - chr3R 10593488 intron hth - chr3R 10593547 intron hth - chr3R_4_10590001 chr3R_10590001 RAL-859 1213 chr3R 10661550 10661573 chr3R 10661641 10661664 7 90 1.5 0.5 1.0 3.5 114 chr3R 10661550 intergenic not near genes chr3R 10661607 intergenic not near genes chr3R 10661664 intergenic not near genes chr3R_7_10660001 chr3R_10660001 RAL-859 1214 chr3R 10730498 10730504 chr3R 10730593 10730599 5 95 2.0 1.0 1.5 2.0 101 chr3R 10730498 intergenic not near genes chr3R 10730548 intergenic not near genes chr3R 10730599 intergenic not near genes chr3R_5_10730001 chr3R_10730001 RAL-859 1215 chr3R 10730994 10731016 chr3R 10731160 10731182 4 166 1.5 1.0 1.2 1.8 188 chr3R 10730994 intergenic not near genes chr3R 10731088 intergenic not near genes chr3R 10731182 intergenic not near genes chr3R_4_10730001 chr3R_10730001 RAL-859 1216 chr3R 10732839 10732870 chr3R 10732924 10732955 10 84 3.0 2.0 2.5 2.9 116 chr3R 10732839 intergenic not near genes chr3R 10732897 intergenic not near genes chr3R 10732955 intergenic not near genes chr3R_10_10730001 chr3R_10730001 RAL-859 1217 chr3R 10900457 10900476 chr3R 10900530 10900551 8 76 2.0 2.5 2.2 2.5 94 chr3R 10900457 intergenic not near genes chr3R 10900504 intergenic not near genes chr3R 10900551 intergenic not near genes chr3R_8_10900001 chr3R_10900001 RAL-859 1218 chr3R 10919688 10919708 chr3R 10919765 10919785 4 78 4.0 1.0 2.5 1.1 97 chr3R 10919688 intergenic not near genes chr3R 10919736 intergenic not near genes chr3R 10919785 intergenic not near genes chr3R_4_10915001 chr3R_10915001 RAL-859 1219 chr3R 10920050 10920075 chr3R 10920126 10920153 6 78 2.0 1.5 1.8 2.1 103 chr3R 10920050 intergenic not near genes chr3R 10920102 intergenic not near genes chr3R 10920153 intergenic not near genes chr3R_6_10920001 chr3R_10920001 RAL-859 1220 chr3R 10957863 10957885 chr3R 10963252 10963274 Rt1c 5 5389 3.5 2.5 3.0 1.2 5411 chr3R 10957863 intergenic not near genes chr3R 10960568 intergenic not near genes chr3R 10963274 intergenic not near genes chr3R_5_10960001 chr3R_10960001 RAL-859 1221 chr3R 11048575 11048607 chr3R 11048659 11048691 4 84 0.5 0.5 0.5 2.7 116 chr3R 11048575 3` UTR CG34114 + chr3R 11048633 3` UTR CG34114 + chr3R 11048691 3` UTR CG34114 + chr3R_4_11045001 chr3R_11045001 RAL-859 1222 chr3R 11085466 11085484 chr3R 11085543 11085561 5 77 0.0 1.5 0.8 2.8 95 chr3R 11085466 3` UTR CR44940 - chr3R 11085514 intergenic CR44940 - chr3R 11085561 intergenic CR44940 - chr3R_5_11085001 chr3R_11085001 RAL-859 1223 chr3R 11102687 11102704 chr3R 11102776 11102789 4 88 3.5 2.0 2.8 1.1 102 chr3R 11102687 intergenic not near genes chr3R 11102738 intergenic not near genes chr3R 11102789 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-859 1224 chr3R 11263408 11263429 chr3R 11263492 11263513 5 84 1.5 3.0 2.2 1.6 105 chr3R 11263408 intergenic not near genes chr3R 11263460 intergenic not near genes chr3R 11263513 intergenic not near genes chr3R_5_11260001 chr3R_11260001 RAL-859 1225 chr3R 11379234 11379263 chr3R 11388389 11388418 roo 6 9155 2.0 2.0 2.0 2.0 9184 chr3R 11379234 intron pros + chr3R 11383826 intron pros + chr3R 11388418 intron pros + chr3R_6_11380001 chr3R_11380001 RAL-859 1226 chr3R 11475930 11475939 chr3R 11477529 11477537 4 1599 1.0 3.0 2.0 1.3 1607 chr3R 11475930 intergenic not near genes chr3R 11476734 intergenic not near genes chr3R 11477537 intergenic not near genes chr3R_4_11475001 chr3R_11475001 RAL-859 1227 chr3R 11557778 11557795 chr3R 11557856 11557873 7 78 0.5 2.5 1.5 2.8 95 chr3R 11557778 5` UTR CG10898 + chr3R 11557826 5` UTR CG10898 + chr3R 11557873 5` UTR CG10898 + chr3R_7_11555001 chr3R_11555001 RAL-859 1228 chr3R 11664791 11664821 chr3R 11664883 11664913 10 92 2.0 1.5 1.8 3.6 122 chr3R 11664791 intron CG42327 + chr3R 11664852 intron CG42327 + chr3R 11664913 intron CG42327 + chr3R_10_11660001 chr3R_11660001 RAL-859 1229 chr3R 11710208 11710223 chr3R 11710286 11710301 9 78 8.5 2.0 5.2 1.5 93 chr3R 11710208 intergenic not near genes chr3R 11710254 intergenic not near genes chr3R 11710301 intergenic not near genes chr3R_9_11710001 chr3R_11710001 RAL-859 1230 chr3R 11723528 11723545 chr3R 11723609 11723626 8 80 0.5 3.5 2.0 2.7 98 chr3R 11723528 intron CG12594 + chr3R 11723577 intron CG12594 + chr3R 11723626 intron CG12594 + chr3R_8_11720001 chr3R_11720001 RAL-859 1231 chr3R 11841060 11841086 chr3R 11846251 11846277 BS 6 5191 5.5 3.0 4.2 1.2 5217 chr3R 11841060 intron CG6959 - chr3R 11843668 intron CG6959 - chr3R 11846277 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-859 1232 chr3R 11853434 11853473 chr3R 11853583 11853620 9 147 1.0 4.0 2.5 2.6 186 chr3R 11853434 intron CG6959 - chr3R 11853527 intron CG6959 - chr3R 11853620 intron CG6959 - chr3R_9_11850001 chr3R_11850001 RAL-859 1233 chr3R 11853769 11853801 chr3R 11853874 11853906 9 105 1.0 2.5 1.8 3.2 137 chr3R 11853769 intron CG6959 - chr3R 11853838 intron CG6959 - chr3R 11853906 intron CG6959 - chr3R_9_11850001 chr3R_11850001 RAL-859 1234 chr3R 11920975 11920998 chr3R 11921072 11921095 10 96 3.5 3.5 3.5 2.2 120 chr3R 11920975 intron Cad87A - chr3R 11921035 intron Cad87A - chr3R 11921095 intron Cad87A - chr3R_10_11920001 chr3R_11920001 RAL-859 1235 chr3R 12022886 12022914 chr3R 12025062 12025091 pogo 10 2177 4.0 2.0 3.0 2.5 2205 chr3R 12022886 intergenic not near genes chr3R 12023988 intergenic not near genes chr3R 12025091 intergenic not near genes chr3R_10_12020001 chr3R_12020001 RAL-859 1236 chr3R 12029932 12029945 chr3R 12030019 12030031 4 86 2.5 2.5 2.5 1.1 99 chr3R 12029932 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12029982 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12030031 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R_4_12025001 chr3R_12025001 RAL-859 1237 chr3R 12082000 12082030 chr3R 12082076 12082106 4 76 3.0 2.0 2.5 1.1 106 chr3R 12082000 intron CG14741 - chr3R 12082053 intron CG14741 - chr3R 12082106 intron CG14741 - chr3R_4_12080001 chr3R_12080001 RAL-859 1238 chr3R 12111899 12111922 chr3R 12111975 12111998 7 76 0.0 2.5 1.2 3.2 99 chr3R 12111899 intergenic dpr17 + chr3R 12111948 intergenic not near genes chr3R 12111998 intergenic not near genes chr3R_7_12110001 chr3R_12110001 RAL-859 1239 chr3R 12154045 12154062 chr3R 12154471 12154488 4 426 9.5 13.5 11.5 0.3 443 chr3R 12154045 intron dpr15 - chr3R 12154266 intron dpr15 - chr3R 12154488 intron dpr15 - chr3R_4_12150001 chr3R_12150001 RAL-859 1240 chr3R 12183186 12183207 chr3R 12183272 12183293 4 86 1.0 0.5 0.8 2.2 107 chr3R 12183186 intergenic not near genes chr3R 12183240 intergenic not near genes chr3R 12183293 intergenic not near genes chr3R_4_12180001 chr3R_12180001 RAL-859 1241 chr3R 12267855 12267885 chr3R 12267935 12267965 6 80 1.5 1.0 1.2 2.7 110 chr3R 12267855 intron svp + chr3R 12267910 intron svp + chr3R 12267965 intron svp + chr3R_6_12265001 chr3R_12265001 RAL-859 1242 chr3R 12344134 12344158 chr3R 12344211 12344235 6 77 0.0 1.5 0.8 3.3 101 chr3R 12344134 intergenic not near genes chr3R 12344184 intergenic not near genes chr3R 12344235 intergenic not near genes chr3R_6_12340001 chr3R_12340001 RAL-859 1243 chr3R 12404995 12405008 chr3R 12405217 12405230 5 222 5.0 1.0 3.0 1.2 235 chr3R 12404995 intron Cyp9f2 - chr3R 12405112 intron Cyp9f2 - chr3R 12405230 intron Cyp9f2 - chr3R_5_12405001 chr3R_12405001 RAL-859 1244 chr3R 12555131 12555148 chr3R 12555295 12555311 4 164 3.5 3.5 3.5 0.9 180 chr3R 12555131 intron Octbeta2R - chr3R 12555221 intron Octbeta2R - chr3R 12555311 intron Octbeta2R - chr3R_4_12555001 chr3R_12555001 RAL-859 1245 chr3R 12619889 12619907 chr3R 12619972 12619990 6 83 4.5 2.5 3.5 1.3 101 chr3R 12619889 intergenic CR44942 - chr3R 12619940 intergenic not near genes chr3R 12619990 intergenic not near genes chr3R_6_12615001 chr3R_12615001 RAL-859 1246 chr3R 12706463 12706496 chr3R 12715775 12715808 13 9312 31.5 18.5 25.0 0.5 9345 chr3R 12706463 exon mus308 - chr3R 12711136 exon mus308 - chr3R 12715808 intron Men - chr3R_13_12710001 chr3R_12710001 RAL-859 1247 chr3R 12733475 12733507 chr3R 12733551 12733584 12 77 3.0 2.0 2.5 3.4 109 chr3R 12733475 intergenic not near genes chr3R 12733530 intergenic not near genes chr3R 12733584 intergenic not near genes chr3R_12_12730001 chr3R_12730001 RAL-859 1248 chr3R 12787940 12787947 chr3R 12788023 12788030 4 83 1.0 1.0 1.0 2.0 90 chr3R 12787940 intergenic not near genes chr3R 12787985 intergenic not near genes chr3R 12788030 intergenic not near genes chr3R_4_12785001 chr3R_12785001 RAL-859 1249 chr3R 12866494 12866509 chr3R 12866645 12866660 5 151 3.0 2.0 2.5 1.4 166 chr3R 12866494 intergenic not near genes chr3R 12866577 intergenic not near genes chr3R 12866660 intergenic not near genes chr3R_5_12865001 chr3R_12865001 RAL-859 1250 chr3R 12920150 12920186 chr3R 12925353 12925389 copia 9 5203 1.5 1.0 1.2 4.1 5239 chr3R 12920150 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925389 intron beat-Vb + chr3R_9_12920001 chr3R_12920001 RAL-859 1251 chr3R 13045790 13045803 chr3R 13053026 13053039 7 7236 38.0 39.0 38.5 0.2 7249 chr3R 13045790 exon Hsc70-2 + chr3R 13049414 3` UTR CG7966 - chr3R 13053039 intron pic + chr3R_7_13045001 chr3R_13045001 RAL-859 1252 chr3R 13073983 13074005 chr3R 13074062 13074084 5 79 2.0 2.0 2.0 1.7 101 chr3R 13073983 intron sim + chr3R 13074034 intron sim + chr3R 13074084 exon sim + chr3R_5_13070001 chr3R_13070001 RAL-859 1253 chr3R 13120774 13120799 chr3R 13120851 13120876 11 77 1.0 3.5 2.2 3.4 102 chr3R 13120774 intron timeout + chr3R 13120825 intron timeout + chr3R 13120876 intron timeout + chr3R_11_13120001 chr3R_13120001 RAL-859 1254 chr3R 13123121 13123126 chr3R 13123200 13123205 4 78 1.5 4.5 3.0 1.0 84 chr3R 13123121 intron,3` UTR timeout +,2mit - chr3R 13123163 intron,3` UTR timeout +,2mit - chr3R 13123205 intron,3` UTR timeout +,2mit - chr3R_4_13120001 chr3R_13120001 RAL-859 1255 chr3R 13143043 13143058 chr3R 13148619 13148634 mdg3 5 5575 2.5 5.5 4.0 1.0 5591 chr3R 13143043 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145838 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148634 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-859 1256 chr3R 13164536 13164566 chr3R 13165617 13165647 8 1080 17.5 8.5 13.0 0.6 1111 chr3R 13164536 intergenic not near genes chr3R 13165092 intergenic not near genes chr3R 13165647 intergenic not near genes chr3R_8_13165001 chr3R_13165001 RAL-859 1257 chr3R 13163304 13163323 chr3R 13165917 13165936 6 2613 22.5 15.0 18.8 0.3 2632 chr3R 13163304 exon timeout + chr3R 13164620 intergenic not near genes chr3R 13165936 intergenic not near genes chr3R_6_13160001 chr3R_13160001 RAL-859 1258 chr3R 13173445 13173466 chr3R 13173527 13173548 5 82 1.5 1.0 1.2 2.3 103 chr3R 13173445 intergenic not near genes chr3R 13173496 intergenic not near genes chr3R 13173548 intergenic not near genes chr3R_5_13170001 chr3R_13170001 RAL-859 1259 chr3R 13195956 13195984 chr3R 13196051 13196078 12 95 2.5 1.0 1.8 4.3 122 chr3R 13195956 intergenic not near genes chr3R 13196017 intergenic not near genes chr3R 13196078 intergenic not near genes chr3R_12_13195001 chr3R_13195001 RAL-859 1260 chr3R 13352056 13352067 chr3R 13352184 13352195 4 128 6.5 0.0 3.2 1.0 139 chr3R 13352056 intergenic not near genes chr3R 13352126 intergenic not near genes chr3R 13352195 intergenic not near genes chr3R_4_13350001 chr3R_13350001 RAL-859 1261 chr3R 13417884 13417905 chr3R 13417961 13417982 4 77 3.5 0.5 2.0 1.3 98 chr3R 13417884 intergenic not near genes chr3R 13417933 intergenic not near genes chr3R 13417982 intergenic not near genes chr3R_4_13415001 chr3R_13415001 RAL-859 1262 chr3R 13526498 13526517 chr3R 13526582 13526601 6 84 1.0 3.0 2.0 2.0 103 chr3R 13526498 intergenic not near genes chr3R 13526550 intergenic not near genes chr3R 13526601 intergenic not near genes chr3R_6_13525001 chr3R_13525001 RAL-859 1263 chr3R 13609561 13609571 chr3R 13609655 13609665 5 94 0.0 1.0 0.5 3.3 104 chr3R 13609561 intergenic CG9759 - chr3R 13609613 intergenic CG9759 - chr3R 13609665 intergenic CG9759 - chr3R_5_13605001 chr3R_13605001 RAL-859 1264 chr3R 13672940 13672977 chr3R 13673018 13673055 10 78 1.5 3.0 2.2 3.1 115 chr3R 13672940 intron Task6 - chr3R 13672998 intron Task6 - chr3R 13673055 intron Task6 - chr3R_10_13670001 chr3R_13670001 RAL-859 1265 chr3R 13692799 13692815 chr3R 13692877 13692893 4 78 2.0 5.0 3.5 0.9 94 chr3R 13692799 3` UTR flfl + chr3R 13692846 3` UTR flfl + chr3R 13692893 3` UTR flfl + chr3R_4_13690001 chr3R_13690001 RAL-859 1266 chr3R 13693025 13693028 chr3R 21907535 21907536 10 8214508 7.5 16.5 12.0 0.8 8214511 chr3R 13693025 3` UTR flfl + chr3R 17800280 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_10_17800001 chr3R_17800001 RAL-859 1267 chr3R 13765259 13765282 chr3R 13765343 13765366 5 84 0.5 3.5 2.0 1.7 107 chr3R 13765259 intergenic CG9312 + chr3R 13765312 intergenic CG9312 + chr3R 13765366 intergenic CG9312 + chr3R_5_13765001 chr3R_13765001 RAL-859 1268 chr3R 13782052 13782089 chr3R 13782133 13782170 5 81 1.5 2.5 2.0 1.7 118 chr3R 13782052 exon CG9286 + chr3R 13782111 intergenic CG9286 +,Dip-B + chr3R 13782170 intergenic CG9286 +,Dip-B + chr3R_5_13780001 chr3R_13780001 RAL-859 1269 chr3R 13863681 13863716 chr3R 13863769 13863804 8 88 1.5 3.0 2.2 2.5 123 chr3R 13863681 intergenic not near genes chr3R 13863742 intergenic not near genes chr3R 13863804 intergenic not near genes chr3R_8_13860001 chr3R_13860001 RAL-859 1270 chr3R 13948231 13948257 chr3R 13948309 13948335 6 78 0.5 0.5 0.5 4.0 104 chr3R 13948231 intergenic CG31517 + chr3R 13948283 intergenic CG31517 + chr3R 13948335 intergenic CG31517 + chr3R_6_13945001 chr3R_13945001 RAL-859 1271 chr3R 14014279 14014282 chr3R 14014411 14014413 4 132 6.0 0.0 3.0 1.0 134 chr3R 14014279 intron rdx - chr3R 14014346 intron rdx - chr3R 14014413 intron rdx - chr3R_4_14010001 chr3R_14010001 RAL-859 1272 chr3R 14021640 14021661 chr3R 14023465 14023485 S-element 4 1825 2.5 2.5 2.5 1.1 1845 chr3R 14021640 intron rdx - chr3R 14022562 intron rdx - chr3R 14023485 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-859 1273 chr3R 14049015 14049043 chr3R 14049095 14049123 4 80 2.0 1.5 1.8 1.4 108 chr3R 14049015 intergenic not near genes chr3R 14049069 intergenic not near genes chr3R 14049123 intergenic not near genes chr3R_4_14045001 chr3R_14045001 RAL-859 1274 chr3R 14077632 14077648 chr3R 14077709 14077724 4 77 2.0 0.5 1.2 1.8 92 chr3R 14077632 intron foxo + chr3R 14077678 intron foxo + chr3R 14077724 intron foxo + chr3R_4_14075001 chr3R_14075001 RAL-859 1275 chr3R 14117442 14117471 chr3R 14117518 14117547 8 76 3.5 2.0 2.8 2.1 105 chr3R 14117442 intron Kif19A - chr3R 14117494 intron Kif19A - chr3R 14117547 intron Kif19A - chr3R_8_14115001 chr3R_14115001 RAL-859 1276 chr3R 14174960 14174992 chr3R 14175047 14175079 11 86 2.5 4.0 3.2 2.6 119 chr3R 14174960 3` UTR Dop1R1 - chr3R 14175020 3` UTR Dop1R1 - chr3R 14175079 3` UTR Dop1R1 - chr3R_11_14175001 chr3R_14175001 RAL-859 1277 chr3R 14246392 14246417 chr3R 14247888 14247913 jockey 5 1496 3.5 2.0 2.8 1.3 1521 chr3R 14246392 intergenic not near genes chr3R 14247152 intergenic not near genes chr3R 14247913 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-859 1278 chr3R 14374453 14374479 chr3R 14374539 14374564 9 86 0.5 1.0 0.8 5.0 111 chr3R 14374453 intergenic not near genes chr3R 14374508 intergenic not near genes chr3R 14374564 intergenic not near genes chr3R_9_14370001 chr3R_14370001 RAL-859 1279 chr3R 14436694 14436719 chr3R 14436770 14436796 8 76 2.0 1.5 1.8 2.9 102 chr3R 14436694 intron cv-c - chr3R 14436745 intron cv-c - chr3R 14436796 intron cv-c - chr3R_8_14435001 chr3R_14435001 RAL-859 1280 chr3R 14478541 14478569 chr3R 14478647 14478675 5 106 2.0 5.5 3.8 1.0 134 chr3R 14478541 intron cv-c - chr3R 14478608 intron cv-c - chr3R 14478675 intron cv-c - chr3R_5_14475001 chr3R_14475001 RAL-859 1281 chr3R 14551694 14551722 chr3R 14555204 14555232 8 3510 17.5 15.0 16.2 0.5 3538 chr3R 14551694 intron Pde6 - chr3R 14553463 intron Pde6 - chr3R 14555232 intron Pde6 - chr3R_8_14550001 chr3R_14550001 RAL-859 1282 chr3R 14631264 14631286 chr3R 14631342 14631364 8 77 1.0 0.5 0.8 4.4 100 chr3R 14631264 intron,intron CG7886 -,Cad88C + chr3R 14631314 intron,intron CG7886 -,Cad88C + chr3R 14631364 intron,intron CG7886 -,Cad88C + chr3R_8_14630001 chr3R_14630001 RAL-859 1283 chr3R 14662316 14662337 chr3R 14662395 14662418 9 81 3.5 2.5 3.0 2.2 102 chr3R 14662316 exon Rad17 - chr3R 14662367 intron Rad17 - chr3R 14662418 exon Rad17 - chr3R_9_14660001 chr3R_14660001 RAL-859 1284 chr3R 14704382 14704414 chr3R 14704459 14704491 10 77 2.0 2.0 2.0 3.3 109 chr3R 14704382 intron kibra - chr3R 14704436 intron kibra - chr3R 14704491 intron kibra - chr3R_10_14700001 chr3R_14700001 RAL-859 1285 chr3R 14779080 14779095 chr3R 14779160 14779175 5 80 1.5 4.0 2.8 1.3 95 chr3R 14779080 intron jvl + chr3R 14779128 intron jvl + chr3R 14779175 intron jvl + chr3R_5_14775001 chr3R_14775001 RAL-859 1286 chr3R 14787135 14787140 chr3R 14787549 14787554 4 414 6.5 1.0 3.8 0.8 419 chr3R 14787135 intron jvl + chr3R 14787344 intron jvl + chr3R 14787554 intron jvl + chr3R_4_14785001 chr3R_14785001 RAL-859 1287 chr3R 14795664 14795692 chr3R 14795749 14795777 5 85 1.5 2.0 1.8 1.8 113 chr3R 14795664 3` UTR jvl + chr3R 14795720 3` UTR jvl + chr3R 14795777 3` UTR jvl + chr3R_5_14795001 chr3R_14795001 RAL-859 1288 chr3R 14796302 14796329 chr3R 14796451 14796478 5 149 1.0 0.5 0.8 2.8 176 chr3R 14796302 intergenic CG14855 +,jvl + chr3R 14796390 5` UTR CG14855 + chr3R 14796478 5` UTR CG14855 + chr3R_5_14795001 chr3R_14795001 RAL-859 1289 chr3R 14851471 14851504 chr3R 14851608 14851640 4 137 2.0 1.0 1.5 1.6 169 chr3R 14851471 intron btsz - chr3R 14851556 intron btsz - chr3R 14851640 intron btsz - chr3R_4_14850001 chr3R_14850001 RAL-859 1290 chr3R 14927238 14927264 chr3R 14927336 14927361 6 98 1.5 1.0 1.2 2.7 123 chr3R 14927238 intergenic not near genes chr3R 14927300 intergenic not near genes chr3R 14927361 intergenic not near genes chr3R_6_14925001 chr3R_14925001 RAL-859 1291 chr3R 14994587 14994609 chr3R 14994676 14994698 8 89 4.5 2.5 3.5 1.8 111 chr3R 14994587 intergenic not near genes chr3R 14994642 intergenic not near genes chr3R 14994698 intergenic not near genes chr3R_8_14990001 chr3R_14990001 RAL-859 1292 chr3R 15041428 15041457 chr3R 15045196 15045225 Doc 5 3768 1.0 2.0 1.5 2.0 3797 chr3R 15041428 intergenic not near genes chr3R 15043326 intergenic not near genes chr3R 15045225 intergenic not near genes chr3R_5_15040001 chr3R_15040001 RAL-859 1293 chr3R 15079809 15079833 chr3R 15080050 15080072 pogo 5 241 2.5 2.5 2.5 1.4 263 chr3R 15079809 3` UTR CG6966 - chr3R 15079940 3` UTR CG6966 - chr3R 15080072 3` UTR CG6966 - chr3R_5_15075001 chr3R_15075001 RAL-859 1294 chr3R 15127780 15127798 chr3R 15127860 15127878 4 80 1.5 0.5 1.0 2.0 98 chr3R 15127780 intron CG42788 - chr3R 15127829 intron CG42788 - chr3R 15127878 intron CG42788 - chr3R_4_15125001 chr3R_15125001 RAL-859 1295 chr3R 15160567 15160584 chr3R 15160665 15160682 7 98 1.0 2.5 1.8 2.5 115 chr3R 15160567 intron Gyc88E + chr3R 15160624 intron Gyc88E + chr3R 15160682 intron Gyc88E + chr3R_7_15160001 chr3R_15160001 RAL-859 1296 chr3R 15302227 15302245 chr3R 15302313 15302331 4 86 3.5 1.0 2.2 1.2 104 chr3R 15302227 intron Tm1 + chr3R 15302279 intron Tm1 + chr3R 15302331 intron Tm1 + chr3R_4_15300001 chr3R_15300001 RAL-859 1297 chr3R 15320395 15320422 chr3R 15320638 15320665 9 243 1.0 1.0 1.0 4.5 270 chr3R 15320395 5` UTR CG44040 + chr3R 15320530 exon CG44040 + chr3R 15320665 3` UTR CG44040 + chr3R_9_15320001 chr3R_15320001 RAL-859 1298 chr3R 15569460 15569485 chr3R 15569561 15569587 5 102 0.0 2.0 1.0 2.5 127 chr3R 15569460 intergenic not near genes chr3R 15569524 intergenic not near genes chr3R 15569587 intergenic not near genes chr3R_5_15565001 chr3R_15565001 RAL-859 1299 chr3R 15594661 15594676 chr3R 15594744 15594758 5 83 0.0 4.0 2.0 1.7 97 chr3R 15594661 intergenic not near genes chr3R 15594710 intergenic not near genes chr3R 15594758 intergenic not near genes chr3R_5_15590001 chr3R_15590001 RAL-859 1300 chr3R 15601168 15601196 chr3R 15608688 15608718 412 7 7522 3.5 1.5 2.5 2.0 7550 chr3R 15601168 intergenic not near genes chr3R 15604943 intergenic not near genes chr3R 15608718 intergenic not near genes chr3R_7_15600001 chr3R_15600001 RAL-859 1301 chr3R 15734195 15734207 chr3R 15734286 15734298 4 91 1.0 5.0 3.0 1.0 103 chr3R 15734195 intergenic not near genes chr3R 15734246 intergenic not near genes chr3R 15734298 intergenic not near genes chr3R_4_15730001 chr3R_15730001 RAL-859 1302 chr3R 15868942 15868956 chr3R 15869021 15869036 4 80 0.5 0.0 0.2 3.3 94 chr3R 15868942 intron CG31183 - chr3R 15868989 intron CG31183 - chr3R 15869036 intron CG31183 - chr3R_4_15865001 chr3R_15865001 RAL-859 1303 chr3R 16048851 16048881 chr3R 16048941 16048971 8 90 2.0 2.5 2.2 2.5 120 chr3R 16048851 intron ird5 - chr3R 16048911 intron ird5 - chr3R 16048971 intron ird5 - chr3R_8_16045001 chr3R_16045001 RAL-859 1304 chr3R 16165016 16165029 chr3R 16165099 16165112 5 83 2.0 2.0 2.0 1.7 96 chr3R 16165016 intron CG6006 + chr3R 16165064 intron CG6006 + chr3R 16165112 intron CG6006 + chr3R_5_16165001 chr3R_16165001 RAL-859 1305 chr3R 16189414 16189439 chr3R 16189817 16189842 invader4 5 403 2.5 1.0 1.8 1.8 428 chr3R 16189414 intron sra + chr3R 16189628 intron sra + chr3R 16189842 intron sra + chr3R_5_16185001 chr3R_16185001 RAL-859 1306 chr3R 16472579 16472599 chr3R 16472653 16472674 4 75 6.0 7.0 6.5 0.5 95 chr3R 16472579 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472674 5` UTR Gyc-89Da + chr3R_4_16470001 chr3R_16470001 RAL-859 1307 chr3R 16522479 16522511 chr3R 16523922 16523955 4 1443 13.5 16.0 14.8 0.3 1476 chr3R 16522479 intron CG42342 + chr3R 16523217 intron CG42342 + chr3R 16523955 intron CG42342 + chr3R_4_16520001 chr3R_16520001 RAL-859 1308 chr3R 16695245 16695260 chr3R 16695343 16695358 4 98 0.5 0.5 0.5 2.7 113 chr3R 16695245 intron Ubx - chr3R 16695302 intron Ubx - chr3R 16695358 intron Ubx - chr3R_4_16695001 chr3R_16695001 RAL-859 1309 chr3R 16756324 16756350 chr3R 16762515 16762541 diver 7 6191 2.0 1.0 1.5 2.8 6217 chr3R 16756324 intron bxd - chr3R 16759432 intron bxd - chr3R 16762541 intron bxd - chr3R_7_16755001 chr3R_16755001 RAL-859 1310 chr3R 16836966 16836988 chr3R 16837295 16837317 5 329 2.5 1.5 2.0 1.7 351 chr3R 16836966 intron iab-8 - chr3R 16837142 intron iab-8 - chr3R 16837317 intron iab-8 - chr3R_5_16835001 chr3R_16835001 RAL-859 1311 chr3R 17123253 17123284 chr3R 17123622 17123652 6 368 3.5 2.5 3.0 1.5 399 chr3R 17123253 intron cher - chr3R 17123452 intron cher - chr3R 17123652 intron cher - chr3R_6_17120001 chr3R_17120001 RAL-859 1312 chr3R 17175944 17175976 chr3R 17176023 17176055 5 78 1.0 1.0 1.0 2.5 111 chr3R 17175944 intron Mur89F - chr3R 17176000 intron Mur89F - chr3R 17176055 intron Mur89F - chr3R_5_17175001 chr3R_17175001 RAL-859 1313 chr3R 17214024 17214045 chr3R 17214100 17214121 4 76 1.5 2.5 2.0 1.3 97 chr3R 17214024 intergenic not near genes chr3R 17214072 intergenic not near genes chr3R 17214121 intergenic not near genes chr3R_4_17210001 chr3R_17210001 RAL-859 1314 chr3R 17242667 17242696 chr3R 17242749 17242778 8 82 0.0 3.0 1.5 3.2 111 chr3R 17242667 intron beat-IIb - chr3R 17242722 intron beat-IIb - chr3R 17242778 intron beat-IIb - chr3R_8_17240001 chr3R_17240001 RAL-859 1315 chr3R 17268674 17268702 chr3R 17268796 17268824 7 122 2.0 1.5 1.8 2.5 150 chr3R 17268674 intergenic not near genes chr3R 17268749 intergenic not near genes chr3R 17268824 intergenic not near genes chr3R_7_17265001 chr3R_17265001 RAL-859 1316 chr3R 17290446 17290468 chr3R 17290532 17290554 7 86 1.0 2.0 1.5 2.8 108 chr3R 17290446 intergenic not near genes chr3R 17290500 intergenic not near genes chr3R 17290554 intergenic not near genes chr3R_7_17290001 chr3R_17290001 RAL-859 1317 chr3R 17294671 17294699 chr3R 17295099 17295127 BS 9 428 2.5 2.5 2.5 2.6 456 chr3R 17294671 intergenic not near genes chr3R 17294899 intergenic not near genes chr3R 17295127 intergenic not near genes chr3R_9_17290001 chr3R_17290001 RAL-859 1318 chr3R 17346246 17346247 chr3R 21907534 21907536 4 4561288 12.0 16.5 14.2 0.3 4561290 chr3R 17346246 intron beat-IIa - chr3R 19626891 intron CG6231 - chr3R 21907536 intergenic CG6678 + chr3R_4_19625001 chr3R_19625001 RAL-859 1319 chr3R 17355490 17355521 chr3R 17355568 17355599 8 77 2.5 2.5 2.5 2.3 109 chr3R 17355490 intron beat-IIa - chr3R 17355544 intron beat-IIa - chr3R 17355599 intron beat-IIa - chr3R_8_17355001 chr3R_17355001 RAL-859 1320 chr3R 17461204 17461232 chr3R 17461286 17461311 5 81 1.0 2.0 1.5 2.0 107 chr3R 17461204 intergenic not near genes chr3R 17461258 intergenic not near genes chr3R 17461311 intergenic not near genes chr3R_5_17460001 chr3R_17460001 RAL-859 1321 chr3R 17587209 17587239 chr3R 17587392 17587420 9 183 2.5 4.5 3.5 2.0 211 chr3R 17587209 intergenic not near genes chr3R 17587314 intergenic not near genes chr3R 17587420 intergenic not near genes chr3R_9_17585001 chr3R_17585001 RAL-859 1322 chr3R 17655867 17655892 chr3R 17655953 17655974 8 85 1.0 3.5 2.2 2.5 107 chr3R 17655867 intron CG14322 + chr3R 17655920 intron CG14322 + chr3R 17655974 intron CG14322 + chr3R_8_17655001 chr3R_17655001 RAL-859 1323 chr3R 17899098 17899107 chr3R 17899176 17899185 4 78 2.0 1.5 1.8 1.4 87 chr3R 17899098 intron Rim - chr3R 17899142 intron Rim - chr3R 17899185 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-859 1324 chr3R 17925852 17925885 chr3R 17927319 17927352 hobo 9 1467 6.0 2.0 4.0 1.8 1500 chr3R 17925852 intron cpo + chr3R 17926602 intron cpo + chr3R 17927352 intron cpo + chr3R_9_17925001 chr3R_17925001 RAL-859 1325 chr3R 18041754 18041778 chr3R 18041831 18041855 7 77 0.0 0.0 0.0 7.0 101 chr3R 18041754 intergenic not near genes chr3R 18041804 intergenic not near genes chr3R 18041855 intergenic not near genes chr3R_7_18040001 chr3R_18040001 RAL-859 1326 chr3R 18103844 18103861 chr3R 18103927 18103944 4 83 4.5 0.0 2.2 1.2 100 chr3R 18103844 intron sr + chr3R 18103894 intron sr + chr3R 18103944 intron sr + chr3R_4_18100001 chr3R_18100001 RAL-859 1327 chr3R 18209776 18209792 chr3R 18209851 18209869 8 76 1.5 1.0 1.2 3.6 93 chr3R 18209776 intron CG7985 + chr3R 18209822 intron CG7985 + chr3R 18209869 intron CG7985 + chr3R_8_18205001 chr3R_18205001 RAL-859 1328 chr3R 18299270 18299296 chr3R 18302638 18302664 8 3368 16.0 19.5 17.8 0.4 3394 chr3R 18299270 5` UTR Dlc90F + chr3R 18300967 exon CG18600 - chr3R 18302664 exon CG7126 - chr3R_8_18300001 chr3R_18300001 RAL-859 1329 chr3R 18394472 18394501 chr3R 18394549 18394577 11 77 2.5 1.5 2.0 3.7 105 chr3R 18394472 intron Vha100-2 - chr3R 18394524 intron Vha100-2 - chr3R 18394577 intron Vha100-2 - chr3R_11_18390001 chr3R_18390001 RAL-859 1330 chr3R 18485438 18485462 chr3R 18485540 18485564 4 101 0.0 0.0 0.0 4.0 126 chr3R 18485438 intron fru - chr3R 18485501 intron fru - chr3R 18485564 intron fru - chr3R_4_18485001 chr3R_18485001 RAL-859 1331 chr3R 18501593 18501627 chr3R 18501673 18501708 6 80 2.0 4.0 3.0 1.5 115 chr3R 18501593 intron fru - chr3R 18501650 intron fru - chr3R 18501708 intron fru - chr3R_6_18500001 chr3R_18500001 RAL-859 1332 chr3R 18606511 18606524 chr3R 18610743 18610756 F-element 5 4232 3.0 6.0 4.5 0.9 4245 chr3R 18606511 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610756 intron,intron qin +,CG14304 - chr3R_5_18605001 chr3R_18605001 RAL-859 1333 chr3R 18622790 18622805 chr3R 18622866 18622881 6 76 3.0 0.0 1.5 2.4 91 chr3R 18622790 intron qin + chr3R 18622836 intron qin + chr3R 18622881 intron qin + chr3R_6_18620001 chr3R_18620001 RAL-859 1334 chr3R 18766779 18766806 chr3R 18766857 18766884 5 78 0.5 2.5 1.5 2.0 105 chr3R 18766779 intron CG7720 - chr3R 18766832 intron CG7720 - chr3R 18766884 intron CG7720 - chr3R_5_18765001 chr3R_18765001 RAL-859 1335 chr3R 18785869 18785893 chr3R 18785945 18785970 8 77 3.0 1.5 2.2 2.5 101 chr3R 18785869 intron CG7720 - chr3R 18785920 intron CG7720 - chr3R 18785970 intron CG7720 - chr3R_8_18785001 chr3R_18785001 RAL-859 1336 chr3R 18808473 18808499 chr3R 18808550 18808576 6 76 2.0 0.5 1.2 2.7 103 chr3R 18808473 intron CG18208 - chr3R 18808524 intron CG18208 - chr3R 18808576 intron CG18208 - chr3R_6_18805001 chr3R_18805001 RAL-859 1337 chr3R 18812074 18812108 chr3R 18812152 18812186 10 78 3.0 2.0 2.5 2.9 112 chr3R 18812074 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812186 intron CG18208 - chr3R_10_18810001 chr3R_18810001 RAL-859 1338 chr3R 18828235 18828257 chr3R 18828401 18828423 4 166 2.0 3.0 2.5 1.1 188 chr3R 18828235 intron CG18208 - chr3R 18828329 intron CG18208 - chr3R 18828423 intron CG18208 - chr3R_4_18825001 chr3R_18825001 RAL-859 1339 chr3R 18910821 18910835 chr3R 18910897 18910911 4 76 7.0 2.0 4.5 0.7 90 chr3R 18910821 intergenic EndoA +,CG14291 - chr3R 18910866 intergenic EndoA +,CG14291 - chr3R 18910911 intergenic CG14291 -,EndoA + chr3R_4_18910001 chr3R_18910001 RAL-859 1340 chr3R 19003215 19003244 chr3R 19003421 19003451 5 207 4.5 2.0 3.2 1.2 236 chr3R 19003215 intron gukh + chr3R 19003333 intron gukh + chr3R 19003451 intron gukh + chr3R_5_19000001 chr3R_19000001 RAL-859 1341 chr3R 19140263 19140301 chr3R 19140711 19140749 14 448 2.0 3.5 2.8 3.7 486 chr3R 19140263 3` UTR Ppcs - chr3R 19140506 3` UTR Ppcs - chr3R 19140749 3` UTR Ppcs - chr3R_14_19140001 chr3R_19140001 RAL-859 1342 chr3R 19340395 19340426 chr3R 19340472 19340503 7 77 2.5 1.0 1.8 2.5 108 chr3R 19340395 intergenic not near genes chr3R 19340449 intergenic not near genes chr3R 19340503 intergenic not near genes chr3R_7_19340001 chr3R_19340001 RAL-859 1343 chr3R 19427182 19427215 chr3R 19428287 19428320 5 1105 0.5 0.5 0.5 3.3 1138 chr3R 19427182 intron CG31221 + chr3R 19427751 intron CG31221 + chr3R 19428320 intron CG31221 + chr3R_5_19425001 chr3R_19425001 RAL-859 1344 chr3R 19492747 19492769 chr3R 19492822 19492848 6 78 1.5 5.5 3.5 1.3 101 chr3R 19492747 intron Dys + chr3R 19492798 intron Dys + chr3R 19492848 intron Dys + chr3R_6_19490001 chr3R_19490001 RAL-859 1345 chr3R 19602761 19602793 chr3R 19602838 19602871 6 78 3.0 2.0 2.5 1.7 110 chr3R 19602761 intergenic CG7333 + chr3R 19602816 intergenic CG7333 + chr3R 19602871 intergenic CG7333 + chr3R_6_19600001 chr3R_19600001 RAL-859 1346 chr3R 19674689 19674717 chr3R 19675103 19675131 4 414 1.5 2.0 1.8 1.4 442 chr3R 19674689 intron Naam + chr3R 19674910 intron Naam + chr3R 19675131 intron Naam + chr3R_4_19670001 chr3R_19670001 RAL-859 1347 chr3R 19702321 19702353 chr3R 19702403 19702434 8 82 1.5 2.0 1.8 2.9 113 chr3R 19702321 intergenic not near genes chr3R 19702378 intergenic not near genes chr3R 19702434 intergenic not near genes chr3R_8_19700001 chr3R_19700001 RAL-859 1348 chr3R 19718904 19718934 chr3R 19718984 19719014 5 80 0.0 1.5 0.8 2.8 110 chr3R 19718904 intergenic not near genes chr3R 19718959 intergenic not near genes chr3R 19719014 intergenic not near genes chr3R_5_19715001 chr3R_19715001 RAL-859 1349 chr3R 19723545 19723559 chr3R 19723705 19723715 5 160 2.5 1.5 2.0 1.7 170 chr3R 19723545 intergenic not near genes chr3R 19723630 intergenic not near genes chr3R 19723715 intergenic not near genes chr3R_5_19720001 chr3R_19720001 RAL-859 1350 chr3R 19793894 19793925 chr3R 19793987 19794018 4 93 3.0 2.5 2.8 1.1 124 chr3R 19793894 intergenic bnl - chr3R 19793956 intergenic bnl - chr3R 19794018 intergenic bnl - chr3R_4_19790001 chr3R_19790001 RAL-859 1351 chr3R 19908288 19908300 chr3R 19908372 19908384 4 84 0.0 4.0 2.0 1.3 96 chr3R 19908288 intron RhoGAP92B + chr3R 19908336 intron RhoGAP92B + chr3R 19908384 intron RhoGAP92B + chr3R_4_19905001 chr3R_19905001 RAL-859 1352 chr3R 19957273 19957298 chr3R 19957348 19957373 9 75 2.5 2.0 2.2 2.8 100 chr3R 19957273 intron Hs6st - chr3R 19957323 intron Hs6st - chr3R 19957373 intron Hs6st - chr3R_9_19955001 chr3R_19955001 RAL-859 1353 chr3R 20008826 20008851 chr3R 20008907 20008932 6 81 3.0 3.0 3.0 1.5 106 chr3R 20008826 intergenic MED25 +,Hs6st - chr3R 20008879 intergenic MED25 +,Hs6st - chr3R 20008932 intergenic MED25 +,Hs6st - chr3R_6_20005001 chr3R_20005001 RAL-859 1354 chr3R 20060631 20060657 chr3R 20060713 20060739 10 82 3.5 2.0 2.8 2.6 108 chr3R 20060631 intergenic not near genes chr3R 20060685 intergenic not near genes chr3R 20060739 intergenic not near genes chr3R_10_20060001 chr3R_20060001 RAL-859 1355 chr3R 20076971 20076980 chr3R 20077047 20077056 4 76 2.0 3.5 2.8 1.1 85 chr3R 20076971 intergenic not near genes chr3R 20077014 intergenic not near genes chr3R 20077056 intergenic not near genes chr3R_4_20075001 chr3R_20075001 RAL-859 1356 chr3R 20109546 20109568 chr3R 20114752 20114774 copia 6 5206 3.0 3.5 3.2 1.4 5228 chr3R 20109546 intergenic not near genes chr3R 20112160 intergenic not near genes chr3R 20114774 intergenic CG10887 + chr3R_6_20110001 chr3R_20110001 RAL-859 1357 chr3R 20188185 20188202 chr3R 20188334 20188351 7 148 3.5 2.5 3.0 1.8 166 chr3R 20188185 intergenic not near genes chr3R 20188268 intergenic not near genes chr3R 20188351 intergenic not near genes chr3R_7_20185001 chr3R_20185001 RAL-859 1358 chr3R 20205562 20205595 chr3R 20205684 20205717 6 122 0.0 0.5 0.2 5.0 155 chr3R 20205562 intron Nlg4 + chr3R 20205640 intron Nlg4 + chr3R 20205717 intron Nlg4 + chr3R_6_20205001 chr3R_20205001 RAL-859 1359 chr3R 20209820 20209834 chr3R 20209906 20209920 6 86 1.5 4.5 3.0 1.5 100 chr3R 20209820 intron Nlg4 + chr3R 20209870 intron Nlg4 + chr3R 20209920 intron Nlg4 + chr3R_6_20205001 chr3R_20205001 RAL-859 1360 chr3R 20245286 20245304 chr3R 20248895 20248914 F-element 5 3610 0.0 2.0 1.0 2.5 3628 chr3R 20245286 3` UTR Nlg4 + chr3R 20247100 intergenic not near genes chr3R 20248914 intergenic not near genes chr3R_5_20245001 chr3R_20245001 RAL-859 1361 chr3R 20252227 20252249 chr3R 20252304 20252327 4 78 1.5 1.5 1.5 1.6 100 chr3R 20252227 intergenic not near genes chr3R 20252277 intergenic cic + chr3R 20252327 intergenic cic + chr3R_4_20250001 chr3R_20250001 RAL-859 1362 chr3R 20266514 20266540 chr3R 20272985 20273011 Burdock 5 6471 0.0 4.0 2.0 1.7 6497 chr3R 20266514 intron cic + chr3R 20269762 intron cic + chr3R 20273011 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-859 1363 chr3R 20282276 20282300 chr3R 20282352 20282376 4 76 0.0 3.0 1.5 1.6 100 chr3R 20282276 intron cic + chr3R 20282326 intron cic + chr3R 20282376 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-859 1364 chr3R 20312876 20312885 chr3R 20312962 20312971 5 86 1.5 3.5 2.5 1.4 95 chr3R 20312876 intron CG42668 + chr3R 20312924 intron CG42668 + chr3R 20312971 intron CG42668 + chr3R_5_20310001 chr3R_20310001 RAL-859 1365 chr3R 20330997 20331032 chr3R 20331483 20331518 roo 6 486 0.5 2.5 1.5 2.4 521 chr3R 20330997 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331518 intergenic not near genes chr3R_6_20330001 chr3R_20330001 RAL-859 1366 chr3R 20465614 20465643 chr3R 20465716 20465745 4 102 0.5 2.5 1.5 1.6 131 chr3R 20465614 intron Gfrl - chr3R 20465680 intron Gfrl - chr3R 20465745 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-859 1367 chr3R 20469295 20469312 chr3R 20469393 20469411 5 99 0.0 0.0 0.0 5.0 116 chr3R 20469295 intron Gfrl - chr3R 20469353 intron Gfrl - chr3R 20469411 intron Gfrl - chr3R_5_20465001 chr3R_20465001 RAL-859 1368 chr3R 20512351 20512371 chr3R 20512434 20512451 9 82 2.0 2.5 2.2 2.8 100 chr3R 20512351 5` UTR CG4288 - chr3R 20512401 5` UTR CG4288 - chr3R 20512451 5` UTR CG4288 - chr3R_9_20510001 chr3R_20510001 RAL-859 1369 chr3R 20564149 20564156 chr3R 20564502 20564509 4 353 1.5 7.5 4.5 0.7 360 chr3R 20564149 intron CG5191 + chr3R 20564329 intron CG5191 + chr3R 20564509 intron CG5191 + chr3R_4_20560001 chr3R_20560001 RAL-859 1370 chr3R 20703483 20703513 chr3R 20703877 20703907 9 394 1.0 1.5 1.2 4.1 424 chr3R 20703483 intron Oamb - chr3R 20703695 intron Oamb - chr3R 20703907 intron Oamb - chr3R_9_20700001 chr3R_20700001 RAL-859 1371 chr3R 20707744 20707768 chr3R 20707959 20707981 6 215 2.0 1.0 1.5 2.4 237 chr3R 20707744 intron Oamb - chr3R 20707862 intron Oamb - chr3R 20707981 intron Oamb - chr3R_6_20705001 chr3R_20705001 RAL-859 1372 chr3R 20716812 20716840 chr3R 20717149 20717176 8 337 3.5 2.5 3.0 2.0 364 chr3R 20716812 intergenic not near genes chr3R 20716994 intergenic not near genes chr3R 20717176 intergenic not near genes chr3R_8_20715001 chr3R_20715001 RAL-859 1373 chr3R 20733761 20733795 chr3R 20733852 20733887 9 92 2.5 2.0 2.2 2.8 126 chr3R 20733761 intergenic not near genes chr3R 20733824 intergenic not near genes chr3R 20733887 intergenic not near genes chr3R_9_20730001 chr3R_20730001 RAL-859 1374 chr3R 20764422 20764434 chr3R 20764518 20764530 4 96 1.0 3.5 2.2 1.2 108 chr3R 20764422 intron Syp + chr3R 20764476 intron Syp + chr3R 20764530 intron Syp + chr3R_4_20760001 chr3R_20760001 RAL-859 1375 chr3R 20771704 20771727 chr3R 20771785 20771805 6 80 0.0 1.5 0.8 3.3 101 chr3R 20771704 intron,intron Syp +,Takl1 - chr3R 20771754 intron,intron Syp +,Takl1 - chr3R 20771805 intron,exon Syp +,Takl1 - chr3R_6_20770001 chr3R_20770001 RAL-859 1376 chr3R 20787446 20787457 chr3R 20787535 20787548 4 90 4.0 3.0 3.5 0.9 102 chr3R 20787446 intron Syp + chr3R 20787497 intron Syp + chr3R 20787548 intron Syp + chr3R_4_20785001 chr3R_20785001 RAL-859 1377 chr3R 20870258 20870284 chr3R 20870343 20870369 6 85 2.0 3.5 2.8 1.6 111 chr3R 20870258 intergenic not near genes chr3R 20870314 intergenic not near genes chr3R 20870369 intergenic not near genes chr3R_6_20870001 chr3R_20870001 RAL-859 1378 chr3R 20878390 20878399 chr3R 20878476 20878485 4 86 1.0 0.0 0.5 2.7 95 chr3R 20878390 intergenic CR44048 -,TotZ + chr3R 20878438 3` UTR CR44048 - chr3R 20878485 3` UTR CR44048 - chr3R_4_20875001 chr3R_20875001 RAL-859 1379 chr3R 21014011 21014033 chr3R 21014089 21014111 7 78 2.5 3.0 2.8 1.8 100 chr3R 21014011 3` UTR Calx + chr3R 21014061 3` UTR Calx + chr3R 21014111 3` UTR Calx + chr3R_7_21010001 chr3R_21010001 RAL-859 1380 chr3R 21020410 21020428 chr3R 21020486 21020504 6 76 2.0 2.0 2.0 2.0 94 chr3R 21020410 3` UTR Rlip + chr3R 21020457 3` UTR Rlip + chr3R 21020504 3` UTR Rlip + chr3R_6_21020001 chr3R_21020001 RAL-859 1381 chr3R 21074806 21074828 chr3R 21075027 21075049 6 220 0.5 4.0 2.2 1.9 243 chr3R 21074806 intron dmrt93B + chr3R 21074928 intron dmrt93B + chr3R 21075049 intron dmrt93B + chr3R_6_21070001 chr3R_21070001 RAL-859 1382 chr3R 21141684 21141705 chr3R 21150165 21150186 Tirant 4 8481 1.0 0.5 0.8 2.2 8502 chr3R 21141684 intron SNF4Agamma + chr3R 21145935 intron SNF4Agamma + chr3R 21150186 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-859 1383 chr3R 21154549 21154582 chr3R 21154754 21154797 5 213 2.5 0.0 1.2 2.3 248 chr3R 21154549 intron SNF4Agamma + chr3R 21154673 intron SNF4Agamma + chr3R 21154797 intron SNF4Agamma + chr3R_5_21150001 chr3R_21150001 RAL-859 1384 chr3R 21193955 21193978 chr3R 21194081 21194103 4 126 4.0 0.5 2.2 1.2 148 chr3R 21193955 intron SNF4Agamma + chr3R 21194029 intron SNF4Agamma + chr3R 21194103 intron SNF4Agamma + chr3R_4_21190001 chr3R_21190001 RAL-859 1385 chr3R 21200108 21200136 chr3R 21200239 21200267 10 131 2.5 0.5 1.5 4.0 159 chr3R 21200108 intron SNF4Agamma + chr3R 21200188 intron SNF4Agamma + chr3R 21200267 intron SNF4Agamma + chr3R_10_21200001 chr3R_21200001 RAL-859 1386 chr3R 21385692 21385962 chr3R 21385774 21386039 15 78 2.5 0.0 1.2 6.8 347 chr3R 21385692 intergenic not near genes chr3R 21385866 intergenic not near genes chr3R 21386039 intergenic not near genes chr3R_15_21385001 chr3R_21385001 RAL-859 1387 chr3R 21442847 21442866 chr3R 21442930 21442950 6 84 2.5 4.0 3.2 1.4 103 chr3R 21442847 intron lbe - chr3R 21442898 intron lbe - chr3R 21442950 intron lbe - chr3R_6_21440001 chr3R_21440001 RAL-859 1388 chr3R 21582997 21583018 chr3R 21583098 21583118 6 101 0.5 4.5 2.5 1.7 121 chr3R 21582997 intron InR - chr3R 21583058 intron InR - chr3R 21583118 intron InR - chr3R_6_21580001 chr3R_21580001 RAL-859 1389 chr3R 21586436 21586452 chr3R 21586520 21586536 6 83 2.5 2.5 2.5 1.7 100 chr3R 21586436 intron InR - chr3R 21586486 intron InR - chr3R 21586536 intron InR - chr3R_6_21585001 chr3R_21585001 RAL-859 1390 chr3R 21600252 21600273 chr3R 21600330 21600351 8 78 0.0 3.5 1.8 2.9 99 chr3R 21600252 intron InR - chr3R 21600302 intron InR - chr3R 21600351 intron InR - chr3R_8_21600001 chr3R_21600001 RAL-859 1391 chr3R 21609007 21609042 chr3R 21611641 21611676 NOF 6 2634 1.5 2.5 2.0 2.0 2669 chr3R 21609007 intron InR - chr3R 21610342 intron InR - chr3R 21611676 intron InR - chr3R_6_21610001 chr3R_21610001 RAL-859 1392 chr3R 21761121 21761146 chr3R 21768513 21768537 mdg1 8 7389 3.0 2.0 2.5 2.3 7416 chr3R 21761121 exon CG42335 + chr3R 21764829 intron CG42335 + chr3R 21768537 exon CG42335 + chr3R_8_21760001 chr3R_21760001 RAL-859 1393 chr3R 8339246 8339246 chr3R 21907534 21907534 8 13568288 6.0 16.5 11.2 0.7 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_8_15120001 chr3R_15120001 RAL-859 1394 chr3R 13104419 13104420 chr3R 21907534 21907534 5 8803114 13.0 16.5 14.8 0.3 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_5_17505001 chr3R_17505001 RAL-859 1395 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 6.0 16.5 11.2 0.3 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-859 1396 chr3R 21337428 21337429 chr3R 21907534 21907534 11 570105 6.0 16.5 11.2 0.9 570106 chr3R 21337428 intron CG16791 - chr3R 21622481 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_11_21620001 chr3R_21620001 RAL-859 1397 chr3R 21907534 21907534 chr3R 24389465 24389465 6 2481931 16.5 12.0 14.2 0.4 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_6_23145001 chr3R_23145001 RAL-859 1398 chr3R 21907534 21907534 chr3R 28831801 28831802 27 6924268 16.5 15.5 16.0 1.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_27_25365001 chr3R_25365001 RAL-859 1399 chr3R 8339246 8339247 chr3R 21907535 21907535 5 13568288 6.0 16.5 11.2 0.4 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-859 1400 chr3R 9620956 9620956 chr3R 21907535 21907535 5 12286579 4.0 16.5 10.2 0.4 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-859 1401 chr3R 13104419 13104420 chr3R 21907535 21907535 4 8803115 13.0 16.5 14.8 0.3 8803116 chr3R 13104419 intron timeout + chr3R 17505977 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-859 1402 chr3R 17389054 17389054 chr3R 21907535 21907535 7 4518481 6.0 16.5 11.2 0.6 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_7_19645001 chr3R_19645001 RAL-859 1403 chr3R 19457915 19457922 chr3R 21907535 21907535 5 2449617 9.5 16.5 13.0 0.4 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_5_20680001 chr3R_20680001 RAL-859 1404 chr3R 21907535 21907535 chr3R 28831801 28831802 69 6924266 17.5 15.5 16.5 3.9 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_69_25365001 chr3R_25365001 RAL-859 1405 chr3R 21907536 21907536 chr3R 28831801 28831806 65 6924266 17.5 15.5 16.5 3.7 6924270 chr3R 21907536 intergenic CG6678 + chr3R 25369671 intron Fur1 - chr3R 28831806 intron WASp - chr3R_65_25365001 chr3R_25365001 RAL-859 1406 chr3R 21907536 21907536 chr3R 29013337 29013340 5 7105803 17.5 14.5 16.0 0.3 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-859 1407 chr3R 21924010 21924046 chr3R 21924099 21924132 5 89 1.0 3.5 2.2 1.6 122 chr3R 21924010 intergenic not near genes chr3R 21924071 intergenic not near genes chr3R 21924132 intergenic not near genes chr3R_5_21920001 chr3R_21920001 RAL-859 1408 chr3R 21952136 21952155 chr3R 21952221 21952240 5 85 1.5 2.0 1.8 1.8 104 chr3R 21952136 intron Eip93F + chr3R 21952188 intron Eip93F + chr3R 21952240 intron Eip93F + chr3R_5_21950001 chr3R_21950001 RAL-859 1409 chr3R 22040141 22040161 chr3R 22040318 22040338 7 177 2.5 1.0 1.8 2.5 197 chr3R 22040141 intergenic not near genes chr3R 22040240 intergenic not near genes chr3R 22040338 intergenic not near genes chr3R_7_22040001 chr3R_22040001 RAL-859 1410 chr3R 22055559 22055588 chr3R 22055748 22055777 13 189 1.0 1.5 1.2 5.9 218 chr3R 22055559 intron how + chr3R 22055668 intron how + chr3R 22055777 intron how + chr3R_13_22055001 chr3R_22055001 RAL-859 1411 chr3R 22060006 22060038 chr3R 22060189 22060221 6 184 0.5 2.0 1.2 2.7 215 chr3R 22060006 intron how + chr3R 22060114 intron how + chr3R 22060221 intron how + chr3R_6_22060001 chr3R_22060001 RAL-859 1412 chr3R 22108364 22108387 chr3R 22108595 22108616 8 231 0.5 3.5 2.0 2.7 252 chr3R 22108364 intron CG5778 - chr3R 22108490 intron CG5778 - chr3R 22108616 intron CG5778 - chr3R_8_22105001 chr3R_22105001 RAL-859 1413 chr3R 22117422 22117439 chr3R 22117498 22117515 6 76 3.5 3.0 3.2 1.4 93 chr3R 22117422 intergenic Ir94b -,Ir94c - chr3R 22117468 intergenic Ir94c -,Ir94b - chr3R 22117515 intergenic Ir94c -,Ir94b - chr3R_6_22115001 chr3R_22115001 RAL-859 1414 chr3R 22153581 22153603 chr3R 22153661 22153683 10 79 2.0 3.0 2.5 2.9 102 chr3R 22153581 intron SKIP + chr3R 22153632 intron SKIP + chr3R 22153683 intron SKIP + chr3R_10_22150001 chr3R_22150001 RAL-859 1415 chr3R 22234692 22234713 chr3R 22236011 22236032 pogo 9 1319 0.5 1.5 1.0 4.5 1340 chr3R 22234692 intron SKIP + chr3R 22235362 intron SKIP + chr3R 22236032 intron SKIP + chr3R_9_22235001 chr3R_22235001 RAL-859 1416 chr3R 22346188 22346196 chr3R 22346274 22346282 4 86 2.0 1.5 1.8 1.4 94 chr3R 22346188 intergenic not near genes chr3R 22346235 intergenic not near genes chr3R 22346282 intergenic not near genes chr3R_4_22345001 chr3R_22345001 RAL-859 1417 chr3R 22450543 22450576 chr3R 22453183 22453216 NOF 4 2640 1.5 1.0 1.2 1.8 2673 chr3R 22450543 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453216 intron CG34376 + chr3R_4_22450001 chr3R_22450001 RAL-859 1418 chr3R 22538445 22538474 chr3R 22538530 22538559 9 84 0.5 4.0 2.2 2.8 114 chr3R 22538445 intron CG5326 - chr3R 22538502 intron CG5326 - chr3R 22538559 intron CG5326 - chr3R_9_22535001 chr3R_22535001 RAL-859 1419 chr3R 22684208 22684235 chr3R 22684283 22684311 6 75 2.0 2.0 2.0 2.0 103 chr3R 22684208 intergenic not near genes chr3R 22684260 intergenic not near genes chr3R 22684311 intergenic not near genes chr3R_6_22680001 chr3R_22680001 RAL-859 1420 chr3R 22769090 22769121 chr3R 22769167 22769198 14 77 2.0 2.5 2.2 4.4 108 chr3R 22769090 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769144 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769198 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_14_22765001 chr3R_22765001 RAL-859 1421 chr3R 22794505 22794537 chr3R 22794582 22794614 10 77 1.0 2.0 1.5 4.0 109 chr3R 22794505 intergenic CG7029 + chr3R 22794560 intergenic not near genes chr3R 22794614 intergenic not near genes chr3R_10_22790001 chr3R_22790001 RAL-859 1422 chr3R 22797758 22797936 chr3R 22797844 22798032 16 90 0.0 0.0 0.0 16.0 274 chr3R 22797758 intergenic not near genes chr3R 22797895 intergenic not near genes chr3R 22798032 intergenic not near genes chr3R_16_22795001 chr3R_22795001 RAL-859 1423 chr3R 22880602 22880613 chr3R 22880679 22880690 4 77 2.0 6.0 4.0 0.8 88 chr3R 22880602 intergenic not near genes chr3R 22880646 intergenic not near genes chr3R 22880690 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-859 1424 chr3R 22880941 22880960 chr3R 22881079 22881098 4 138 1.5 1.5 1.5 1.6 157 chr3R 22880941 intergenic not near genes chr3R 22881020 intergenic not near genes chr3R 22881098 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-859 1425 chr3R 22889014 22889038 chr3R 22889091 22889115 7 77 2.0 3.0 2.5 2.0 101 chr3R 22889014 intergenic not near genes chr3R 22889064 intergenic not near genes chr3R 22889115 intergenic not near genes chr3R_7_22885001 chr3R_22885001 RAL-859 1426 chr3R 23070659 23070662 chr3R 23070738 23070742 5 80 2.5 0.0 1.2 2.3 83 chr3R 23070659 3` UTR CG13830 - chr3R 23070700 3` UTR CG13830 - chr3R 23070742 3` UTR CG13830 - chr3R_5_23070001 chr3R_23070001 RAL-859 1427 chr3R 23090406 23090437 chr3R 23090487 23090520 11 82 2.0 4.0 3.0 2.8 114 chr3R 23090406 intron CG13830 - chr3R 23090463 intron CG13830 - chr3R 23090520 intron CG13830 - chr3R_11_23090001 chr3R_23090001 RAL-859 1428 chr3R 23140310 23140332 chr3R 23140392 23140414 4 82 0.5 1.5 1.0 2.0 104 chr3R 23140310 intron hh - chr3R 23140362 intron hh - chr3R 23140414 intron hh - chr3R_4_23140001 chr3R_23140001 RAL-859 1429 chr3R 23168060 23168076 chr3R 23168130 23168156 4 78 2.5 3.5 3.0 1.0 96 chr3R 23168060 intergenic Irk1 + chr3R 23168108 intergenic Irk1 + chr3R 23168156 intergenic Irk1 + chr3R_4_23165001 chr3R_23165001 RAL-859 1430 chr3R 23211986 23211992 chr3R 23212063 23212070 4 78 2.0 3.5 2.8 1.1 84 chr3R 23211986 intron cnc - chr3R 23212028 intron cnc - chr3R 23212070 intron cnc - chr3R_4_23210001 chr3R_23210001 RAL-859 1431 chr3R 23335437 23335465 chr3R 23335514 23335543 10 77 3.5 3.0 3.2 2.4 106 chr3R 23335437 intron pnt - chr3R 23335490 intron pnt - chr3R 23335543 intron pnt - chr3R_10_23335001 chr3R_23335001 RAL-859 1432 chr3R 23385588 23385618 chr3R 23385710 23385740 7 122 1.0 2.0 1.5 2.8 152 chr3R 23385588 intergenic not near genes chr3R 23385664 intergenic not near genes chr3R 23385740 intergenic not near genes chr3R_7_23385001 chr3R_23385001 RAL-859 1433 chr3R 23421980 23422010 chr3R 23422065 23422095 6 84 1.0 2.0 1.5 2.4 115 chr3R 23421980 intron CG4374 - chr3R 23422038 intron CG4374 - chr3R 23422095 intron CG4374 - chr3R_6_23420001 chr3R_23420001 RAL-859 1434 chr3R 23476108 23476124 chr3R 23476186 23476202 4 78 3.5 1.5 2.5 1.1 94 chr3R 23476108 intergenic not near genes chr3R 23476155 intergenic not near genes chr3R 23476202 intergenic not near genes chr3R_4_23475001 chr3R_23475001 RAL-859 1435 chr3R 23497963 23497974 chr3R 23498047 23498058 4 84 2.0 3.0 2.5 1.1 95 chr3R 23497963 intergenic not near genes chr3R 23498010 intergenic not near genes chr3R 23498058 intergenic not near genes chr3R_4_23495001 chr3R_23495001 RAL-859 1436 chr3R 23558398 23558429 chr3R 23560179 23560210 Bari1 4 1781 1.0 1.5 1.2 1.8 1812 chr3R 23558398 intron beat-IV + chr3R 23559304 intron beat-IV + chr3R 23560210 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-859 1437 chr3R 23564446 23564476 chr3R 23564590 23564619 8 144 2.5 4.0 3.2 1.9 173 chr3R 23564446 intron beat-IV + chr3R 23564532 intron beat-IV + chr3R 23564619 intron beat-IV + chr3R_8_23560001 chr3R_23560001 RAL-859 1438 chr3R 23572751 23572775 chr3R 23572871 23572895 8 120 1.0 3.5 2.2 2.5 144 chr3R 23572751 intron beat-IV + chr3R 23572823 intron beat-IV + chr3R 23572895 intron beat-IV + chr3R_8_23570001 chr3R_23570001 RAL-859 1439 chr3R 23639930 23639955 chr3R 23640236 23640261 4 306 2.5 1.0 1.8 1.4 331 chr3R 23639930 intron CG31145 - chr3R 23640096 intron CG31145 - chr3R 23640261 intron CG31145 - chr3R_4_23640001 chr3R_23640001 RAL-859 1440 chr3R 23684696 23684727 chr3R 23685182 23685211 roo 15 484 4.5 4.5 4.5 2.7 515 chr3R 23684696 exon CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685211 exon CG18754 + chr3R_15_23680001 chr3R_23680001 RAL-859 1441 chr3R 23688483 23688497 chr3R 23688574 23688586 5 91 2.0 3.5 2.8 1.3 103 chr3R 23688483 intergenic SPE + chr3R 23688534 intergenic SPE +,CG10254 - chr3R 23688586 intergenic CG10254 -,SPE + chr3R_5_23685001 chr3R_23685001 RAL-859 1442 chr3R 23835417 23835436 chr3R 23844567 23844585 roo 7 9150 1.0 3.0 2.0 2.3 9168 chr3R 23835417 intron CG34355 + chr3R 23840001 intron CG34355 + chr3R 23844585 intron CG34355 + chr3R_7_23840001 chr3R_23840001 RAL-859 1443 chr3R 23846120 23846138 chr3R 23846205 23846223 4 85 2.0 2.5 2.2 1.2 103 chr3R 23846120 intron CG34355 + chr3R 23846172 intron CG34355 + chr3R 23846223 intron CG34355 + chr3R_4_23845001 chr3R_23845001 RAL-859 1444 chr3R 23884295 23884324 chr3R 23884378 23884408 7 84 4.0 2.0 3.0 1.8 113 chr3R 23884295 intron Pli - chr3R 23884352 intron Pli - chr3R 23884408 intron Pli - chr3R_7_23880001 chr3R_23880001 RAL-859 1445 chr3R 23944913 23944934 chr3R 23944998 23945019 8 85 1.5 5.0 3.2 1.9 106 chr3R 23944913 intron CG12268 - chr3R 23944966 intron CG12268 - chr3R 23945019 exon CG12268 - chr3R_8_23940001 chr3R_23940001 RAL-859 1446 chr3R 23949053 23949062 chr3R 23949129 23949139 4 77 2.0 1.5 1.8 1.4 86 chr3R 23949053 intergenic not near genes chr3R 23949096 intergenic not near genes chr3R 23949139 intergenic not near genes chr3R_4_23945001 chr3R_23945001 RAL-859 1447 chr3R 24072085 24072102 chr3R 24072523 24072540 jockey 9 438 8.5 0.0 4.2 1.7 455 chr3R 24072085 intron 4EHP - chr3R 24072312 intron 4EHP - chr3R 24072540 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-859 1448 chr3R 24076916 24076948 chr3R 24078383 24078415 hobo 13 1467 4.5 4.0 4.2 2.5 1499 chr3R 24076916 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078415 intron 4EHP - chr3R_13_24075001 chr3R_24075001 RAL-859 1449 chr3R 24100629 24100654 chr3R 24100719 24100744 5 90 1.0 2.5 1.8 1.8 115 chr3R 24100629 intron 4EHP - chr3R 24100686 intron 4EHP - chr3R 24100744 intron 4EHP - chr3R_5_24100001 chr3R_24100001 RAL-859 1450 chr3R 21907534 21907535 chr3R 24389465 24389465 13 2481930 17.5 12.0 14.8 0.8 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_13_23145001 chr3R_23145001 RAL-859 1451 chr3R 24392593 24392627 chr3R 24392691 24392724 13 98 1.0 0.5 0.8 7.2 131 chr3R 24392593 intergenic CG13616 + chr3R 24392658 intergenic CG13616 + chr3R 24392724 intergenic CG13616 + chr3R_13_24390001 chr3R_24390001 RAL-859 1452 chr3R 24433346 24433374 chr3R 24433491 24433519 5 145 2.0 2.0 2.0 1.7 173 chr3R 24433346 intron nAChRalpha1 - chr3R 24433432 intron nAChRalpha1 - chr3R 24433519 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-859 1453 chr3R 24493276 24493307 chr3R 24493504 24493536 BS 7 229 2.0 2.5 2.2 2.2 260 chr3R 24493276 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493536 intergenic not near genes chr3R_7_24490001 chr3R_24490001 RAL-859 1454 chr3R 24667615 24667632 chr3R 24667692 24667707 4 76 2.5 0.0 1.2 1.8 92 chr3R 24667615 intron slo + chr3R 24667661 intron slo + chr3R 24667707 intron slo + chr3R_4_24665001 chr3R_24665001 RAL-859 1455 chr3R 24670160 24670199 chr3R 24670244 24670283 11 84 1.0 1.0 1.0 5.5 123 chr3R 24670160 intron slo + chr3R 24670222 intron slo + chr3R 24670283 intron slo + chr3R_11_24670001 chr3R_24670001 RAL-859 1456 chr3R 24671221 24671229 chr3R 24671297 24671306 6 77 3.5 1.0 2.2 1.9 85 chr3R 24671221 intron slo + chr3R 24671264 intron slo + chr3R 24671306 intron slo + chr3R_6_24670001 chr3R_24670001 RAL-859 1457 chr3R 24730090 24730118 chr3R 24732468 24732496 Doc 6 2378 3.5 0.5 2.0 2.0 2406 chr3R 24730090 intron tok + chr3R 24731293 intron tok + chr3R 24732496 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-859 1458 chr3R 24785080 24785111 chr3R 24785156 24785187 8 76 1.5 3.0 2.2 2.5 107 chr3R 24785080 3` UTR CG5805 - chr3R 24785134 3` UTR CG5805 - chr3R 24785187 3` UTR CG5805 - chr3R_8_24785001 chr3R_24785001 RAL-859 1459 chr3R 24789984 24790007 chr3R 24790129 24790152 4 145 2.5 4.0 3.2 1.0 168 chr3R 24789984 intron,5` UTR Ets96B +,CG13634 - chr3R 24790068 intron,5` UTR Ets96B +,CG13634 - chr3R 24790152 intron Ets96B + chr3R_4_24790001 chr3R_24790001 RAL-859 1460 chr3R 24842101 24842130 chr3R 24842187 24842216 7 86 2.0 1.0 1.5 2.8 115 chr3R 24842101 5` UTR Esp + chr3R 24842158 5` UTR Esp + chr3R 24842216 5` UTR Esp + chr3R_7_24840001 chr3R_24840001 RAL-859 1461 chr3R 24845991 24846026 chr3R 24846081 24846116 11 90 2.0 2.0 2.0 3.7 125 chr3R 24845991 intron Esp + chr3R 24846054 intron Esp + chr3R 24846116 intron Esp + chr3R_11_24845001 chr3R_24845001 RAL-859 1462 chr3R 24927132 24927152 chr3R 24931922 24931943 Doc 5 4791 2.5 1.5 2.0 1.7 4811 chr3R 24927132 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931943 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-859 1463 chr3R 25008205 25008222 chr3R 25008282 25008294 5 76 5.5 2.5 4.0 1.0 89 chr3R 25008205 intron tnc + chr3R 25008250 intron tnc + chr3R 25008294 intron tnc + chr3R_5_25005001 chr3R_25005001 RAL-859 1464 chr3R 25072761 25072791 chr3R 25072853 25072883 8 92 1.5 2.0 1.8 2.9 122 chr3R 25072761 3` UTR CG9996 - chr3R 25072822 3` UTR CG9996 - chr3R 25072883 3` UTR CG9996 - chr3R_8_25070001 chr3R_25070001 RAL-859 1465 chr3R 25209601 25209607 chr3R 25209682 25209689 5 82 1.0 4.5 2.8 1.3 88 chr3R 25209601 intron CG13654 + chr3R 25209645 intron CG13654 + chr3R 25209689 intron CG13654 + chr3R_5_25205001 chr3R_25205001 RAL-859 1466 chr3R 25352481 25352504 chr3R 25352626 25352649 4 145 3.0 4.5 3.8 0.8 168 chr3R 25352481 intron Fur1 - chr3R 25352565 intron Fur1 - chr3R 25352649 intron Fur1 - chr3R_4_25350001 chr3R_25350001 RAL-859 1467 chr3R 25368484 25368504 chr3R 25368602 25368622 4 118 1.0 4.0 2.5 1.1 138 chr3R 25368484 intron Fur1 - chr3R 25368553 intron Fur1 - chr3R 25368622 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-859 1468 chr3R 25448037 25448061 chr3R 25448150 25448174 7 113 2.0 4.0 3.0 1.8 137 chr3R 25448037 intron Fur1 - chr3R 25448106 intron Fur1 - chr3R 25448174 intron Fur1 - chr3R_7_25445001 chr3R_25445001 RAL-859 1469 chr3R 25465056 25465065 chr3R 25465132 25465142 4 77 3.5 0.5 2.0 1.3 86 chr3R 25465056 intron Fur1 - chr3R 25465099 intron Fur1 - chr3R 25465142 intron Fur1 - chr3R_4_25465001 chr3R_25465001 RAL-859 1470 chr3R 25573077 25573103 chr3R 25573159 25573187 6 84 2.0 1.5 1.8 2.1 110 chr3R 25573077 intron msi + chr3R 25573132 intron msi + chr3R 25573187 intron msi + chr3R_6_25570001 chr3R_25570001 RAL-859 1471 chr3R 25573657 25573673 chr3R 25573749 25573764 6 91 2.0 2.0 2.0 2.0 107 chr3R 25573657 intron msi + chr3R 25573710 intron msi + chr3R 25573764 intron msi + chr3R_6_25570001 chr3R_25570001 RAL-859 1472 chr3R 25689125 25689162 chr3R 25689233 25689270 12 108 3.0 1.5 2.2 3.8 145 chr3R 25689125 intergenic not near genes chr3R 25689198 intergenic not near genes chr3R 25689270 intergenic not near genes chr3R_12_25685001 chr3R_25685001 RAL-859 1473 chr3R 25725827 25725861 chr3R 25734987 25735021 roo 6 9160 0.5 0.5 0.5 4.0 9194 chr3R 25725827 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735021 intron LpR2 - chr3R_6_25730001 chr3R_25730001 RAL-859 1474 chr3R 25782017 25782049 chr3R 25782093 25782125 9 76 2.0 1.5 1.8 3.2 108 chr3R 25782017 intergenic not near genes chr3R 25782071 intergenic not near genes chr3R 25782125 intergenic not near genes chr3R_9_25780001 chr3R_25780001 RAL-859 1475 chr3R 25789211 25789237 chr3R 25789289 25789313 9 78 4.0 3.0 3.5 2.0 102 chr3R 25789211 exon CG31380 - chr3R 25789262 exon CG31380 - chr3R 25789313 exon CG31380 - chr3R_9_25785001 chr3R_25785001 RAL-859 1476 chr3R 25832702 25832724 chr3R 25841883 25841905 roo 6 9181 2.5 4.0 3.2 1.4 9203 chr3R 25832702 exon alpha4GT2 + chr3R 25837304 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_6_25835001 chr3R_25835001 RAL-859 1477 chr3R 25861836 25861849 chr3R 25861913 25861926 6 77 2.0 2.0 2.0 2.0 90 chr3R 25861836 intron CG5890 + chr3R 25861881 intron CG5890 + chr3R 25861926 intron CG5890 + chr3R_6_25860001 chr3R_25860001 RAL-859 1478 chr3R 25927506 25927521 chr3R 25927588 25927603 4 82 4.0 2.0 3.0 1.0 97 chr3R 25927506 intron CCAP-R - chr3R 25927554 intron CCAP-R - chr3R 25927603 intron CCAP-R - chr3R_4_25925001 chr3R_25925001 RAL-859 1479 chr3R 25962059 25962076 chr3R 25962155 25962172 7 96 2.0 3.5 2.8 1.8 113 chr3R 25962059 intron boss + chr3R 25962116 intron boss + chr3R 25962172 intron boss + chr3R_7_25960001 chr3R_25960001 RAL-859 1480 chr3R 26166650 26166666 chr3R 26166743 26166759 5 93 3.0 2.5 2.8 1.3 109 chr3R 26166650 intergenic not near genes chr3R 26166704 intergenic not near genes chr3R 26166759 intergenic not near genes chr3R_5_26165001 chr3R_26165001 RAL-859 1481 chr3R 26193335 26193361 chr3R 26193417 26193442 4 82 1.5 1.0 1.2 1.8 107 chr3R 26193335 intergenic not near genes chr3R 26193388 intergenic not near genes chr3R 26193442 intergenic not near genes chr3R_4_26190001 chr3R_26190001 RAL-859 1482 chr3R 26294716 26294741 chr3R 26294794 26294819 4 78 2.5 2.5 2.5 1.1 103 chr3R 26294716 intergenic not near genes chr3R 26294768 intergenic not near genes chr3R 26294819 intergenic not near genes chr3R_4_26290001 chr3R_26290001 RAL-859 1483 chr3R 26376324 26376355 chr3R 26385484 26385515 roo 9 9160 3.0 0.5 1.8 3.2 9191 chr3R 26376324 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385515 intergenic not near genes chr3R_9_26380001 chr3R_26380001 RAL-859 1484 chr3R 26529349 26529368 chr3R 26529432 26529451 6 83 2.5 1.5 2.0 2.0 102 chr3R 26529349 intron plum - chr3R 26529400 intron plum - chr3R 26529451 intron plum - chr3R_6_26525001 chr3R_26525001 RAL-859 1485 chr3R 26542044 26542075 chr3R 26542135 26542166 12 91 2.5 1.0 1.8 4.3 122 chr3R 26542044 intron scrib + chr3R 26542105 intron scrib + chr3R 26542166 intron scrib + chr3R_12_26540001 chr3R_26540001 RAL-859 1486 chr3R 26607741 26607765 chr3R 26607816 26607841 5 76 2.5 2.0 2.2 1.6 100 chr3R 26607741 5` UTR CR44951 + chr3R 26607791 5` UTR CR44951 + chr3R 26607841 5` UTR CR44951 + chr3R_5_26605001 chr3R_26605001 RAL-859 1487 chr3R 26642730 26642760 chr3R 26643123 26643153 jockey 4 393 2.0 2.0 2.0 1.3 423 chr3R 26642730 intergenic not near genes chr3R 26642942 intergenic not near genes chr3R 26643153 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-859 1488 chr3R 26734028 26734051 chr3R 26734112 26734135 7 84 1.5 0.5 1.0 3.5 107 chr3R 26734028 intergenic not near genes chr3R 26734082 intergenic not near genes chr3R 26734135 intergenic not near genes chr3R_7_26730001 chr3R_26730001 RAL-859 1489 chr3R 26770241 26770256 chr3R 26770317 26770333 8 77 4.5 2.0 3.2 1.9 92 chr3R 26770241 intergenic CR45563 + chr3R 26770287 intergenic CR45563 + chr3R 26770333 intergenic not near genes chr3R_8_26770001 chr3R_26770001 RAL-859 1490 chr3R 26789604 26789619 chr3R 26789683 26789698 4 79 0.0 0.0 0.0 4.0 94 chr3R 26789604 intergenic not near genes chr3R 26789651 intergenic not near genes chr3R 26789698 intergenic not near genes chr3R_4_26785001 chr3R_26785001 RAL-859 1491 chr3R 26796138 26796167 chr3R 26796323 26796350 9 185 1.5 2.0 1.8 3.2 212 chr3R 26796138 intergenic not near genes chr3R 26796244 intergenic not near genes chr3R 26796350 intergenic not near genes chr3R_9_26795001 chr3R_26795001 RAL-859 1492 chr3R 26923338 26923363 chr3R 26923677 26923704 5 340 2.5 2.5 2.5 1.4 366 chr3R 26923338 intron sda + chr3R 26923521 intron sda + chr3R 26923704 intron sda + chr3R_5_26920001 chr3R_26920001 RAL-859 1493 chr3R 27043319 27043342 chr3R 27043409 27043432 6 90 0.5 3.0 1.8 2.1 113 chr3R 27043319 intron RYa-R + chr3R 27043376 intron RYa-R + chr3R 27043432 intron RYa-R + chr3R_6_27040001 chr3R_27040001 RAL-859 1494 chr3R 27133520 27133545 chr3R 27133637 27133662 10 117 1.0 1.0 1.0 5.0 142 chr3R 27133520 intron CG6051 - chr3R 27133591 intron CG6051 - chr3R 27133662 intron CG6051 - chr3R_10_27130001 chr3R_27130001 RAL-859 1495 chr3R 27140514 27140538 chr3R 27148124 27148147 412 5 7610 2.0 2.0 2.0 1.7 7633 chr3R 27140514 intron CG6051 - chr3R 27144330 intron CG6051 - chr3R 27148147 intron CG6051 - chr3R_5_27140001 chr3R_27140001 RAL-859 1496 chr3R 27195588 27195612 chr3R 27195674 27195698 7 86 3.0 2.5 2.8 1.8 110 chr3R 27195588 intergenic not near genes chr3R 27195643 intergenic not near genes chr3R 27195698 intergenic not near genes chr3R_7_27195001 chr3R_27195001 RAL-859 1497 chr3R 27335950 27335965 chr3R 27336030 27336045 6 80 0.0 0.0 0.0 6.0 95 chr3R 27335950 intergenic not near genes chr3R 27335998 intergenic not near genes chr3R 27336045 intergenic not near genes chr3R_6_27335001 chr3R_27335001 RAL-859 1498 chr3R 27342796 27342824 chr3R 27351377 27351405 Tirant 6 8580 2.5 4.0 3.2 1.4 8609 chr3R 27342796 intron CG42534 + chr3R 27347100 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_6_27345001 chr3R_27345001 RAL-859 1499 chr3R 27445260 27445272 chr3R 27445337 27445349 4 77 0.0 6.0 3.0 1.0 89 chr3R 27445260 intergenic not near genes chr3R 27445304 intergenic not near genes chr3R 27445349 intergenic not near genes chr3R_4_27445001 chr3R_27445001 RAL-859 1500 chr3R 27470884 27470911 chr3R 27470997 27471024 7 113 1.5 3.0 2.2 2.2 140 chr3R 27470884 intergenic not near genes chr3R 27470954 intergenic not near genes chr3R 27471024 intergenic not near genes chr3R_7_27470001 chr3R_27470001 RAL-859 1501 chr3R 27492378 27492400 chr3R 27492465 27492487 6 87 2.5 0.5 1.5 2.4 109 chr3R 27492378 intergenic not near genes chr3R 27492432 intergenic not near genes chr3R 27492487 intergenic not near genes chr3R_6_27490001 chr3R_27490001 RAL-859 1502 chr3R 27517436 27517460 chr3R 27517541 27517565 14 105 3.0 4.0 3.5 3.1 129 chr3R 27517436 intergenic CG13972 - chr3R 27517500 intergenic CG13972 - chr3R 27517565 intergenic CG13972 - chr3R_14_27515001 chr3R_27515001 RAL-859 1503 chr3R 27595059 27595084 chr3R 27595142 27595167 6 83 2.0 3.0 2.5 1.7 108 chr3R 27595059 intron CG5639 - chr3R 27595113 intron CG5639 - chr3R 27595167 intron CG5639 - chr3R_6_27595001 chr3R_27595001 RAL-859 1504 chr3R 27627085 27627114 chr3R 27627187 27627216 5 102 1.0 2.0 1.5 2.0 131 chr3R 27627085 intron Tusp + chr3R 27627150 intron Tusp + chr3R 27627216 intron Tusp + chr3R_5_27625001 chr3R_27625001 RAL-859 1505 chr3R 27679937 27679965 chr3R 27680060 27680088 9 123 3.0 2.5 2.8 2.4 151 chr3R 27679937 exon CG12883 + chr3R 27680012 3` UTR CG12883 + chr3R 27680088 3` UTR CG12883 + chr3R_9_27680001 chr3R_27680001 RAL-859 1506 chr3R 27705368 27705388 chr3R 27705448 27705468 5 80 1.5 3.5 2.5 1.4 100 chr3R 27705368 exon CG12428 - chr3R 27705418 intron CG12428 - chr3R 27705468 exon CG12428 - chr3R_5_27705001 chr3R_27705001 RAL-859 1507 chr3R 27725564 27725596 chr3R 27731006 27731038 I-element 6 5442 2.5 3.5 3.0 1.5 5474 chr3R 27725564 intergenic not near genes chr3R 27728301 intergenic not near genes chr3R 27731038 intergenic not near genes chr3R_6_27725001 chr3R_27725001 RAL-859 1508 chr3R 27731198 27731230 chr3R 27731278 27731311 11 80 4.0 4.0 4.0 2.2 113 chr3R 27731198 intergenic not near genes chr3R 27731254 intergenic not near genes chr3R 27731311 intergenic not near genes chr3R_11_27730001 chr3R_27730001 RAL-859 1509 chr3R 27748000 27748019 chr3R 27748078 27748097 4 78 3.0 3.5 3.2 1.0 97 chr3R 27748000 3` UTR Ets98B + chr3R 27748048 3` UTR Ets98B + chr3R 27748097 3` UTR Ets98B + chr3R_4_27745001 chr3R_27745001 RAL-859 1510 chr3R 27779277 27779289 chr3R 27779354 27779366 7 77 3.0 2.5 2.8 1.8 89 chr3R 27779277 exon CG34353 - chr3R 27779322 intron CG34353 - chr3R 27779366 intron CG34353 - chr3R_7_27775001 chr3R_27775001 RAL-859 1511 chr3R 27862952 27862979 chr3R 27868257 27868284 Transpac 6 5305 3.0 1.5 2.2 1.9 5332 chr3R 27862952 intron CG34353 - chr3R 27865618 intron CG34353 - chr3R 27868284 intron CG34353 - chr3R_6_27865001 chr3R_27865001 RAL-859 1512 chr3R 27875704 27875733 chr3R 27882759 27882788 297 4 7054 2.5 3.5 3.0 1.0 7084 chr3R 27875704 intron CG34353 - chr3R 27879246 intron CG34353 - chr3R 27882788 intron CG34353 - chr3R_4_27875001 chr3R_27875001 RAL-859 1513 chr3R 28039992 28040005 chr3R 28040074 28040088 8 83 1.0 3.5 2.2 2.5 96 chr3R 28039992 intron CG34362 + chr3R 28040040 intron CG34362 + chr3R 28040088 intron CG34362 + chr3R_8_28040001 chr3R_28040001 RAL-859 1514 chr3R 28054444 28054473 chr3R 28054519 28054549 7 76 1.0 2.5 1.8 2.5 105 chr3R 28054444 intron CG34362 + chr3R 28054496 intron CG34362 + chr3R 28054549 intron CG34362 + chr3R_7_28050001 chr3R_28050001 RAL-859 1515 chr3R 28068493 28068522 chr3R 28073935 28073964 I-element 5 5442 1.5 2.5 2.0 1.7 5471 chr3R 28068493 intron CG34362 + chr3R 28071228 intron CG34362 + chr3R 28073964 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-859 1516 chr3R 28173669 28173704 chr3R 28181099 28181134 mdg1 7 7430 2.0 2.0 2.0 2.3 7465 chr3R 28173669 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181134 intron CG34354 + chr3R_7_28175001 chr3R_28175001 RAL-859 1517 chr3R 28253337 28253366 chr3R 28255847 28255876 jockey 8 2510 3.0 3.5 3.2 1.9 2539 chr3R 28253337 intergenic not near genes chr3R 28254606 intergenic not near genes chr3R 28255876 intergenic not near genes chr3R_8_28250001 chr3R_28250001 RAL-859 1518 chr3R 28330292 28330323 chr3R 28330535 28330566 15 243 1.0 2.5 1.8 5.4 274 chr3R 28330292 intron larp - chr3R 28330429 intron larp - chr3R 28330566 intron larp - chr3R_15_28330001 chr3R_28330001 RAL-859 1519 chr3R 28407705 28407740 chr3R 28407791 28407826 8 86 1.0 3.0 2.0 2.7 121 chr3R 28407705 intergenic not near genes chr3R 28407766 intergenic not near genes chr3R 28407826 intergenic not near genes chr3R_8_28405001 chr3R_28405001 RAL-859 1520 chr3R 28424174 28424202 chr3R 28424263 28424291 10 89 3.5 2.5 3.0 2.5 117 chr3R 28424174 intron beat-VI + chr3R 28424232 intron beat-VI + chr3R 28424291 intron beat-VI + chr3R_10_28420001 chr3R_28420001 RAL-859 1521 chr3R 28441982 28442008 chr3R 28442077 28442102 7 94 1.5 3.0 2.2 2.2 120 chr3R 28441982 intron beat-VI + chr3R 28442042 intron beat-VI + chr3R 28442102 intron beat-VI + chr3R_7_28440001 chr3R_28440001 RAL-859 1522 chr3R 28484353 28484375 chr3R 28486270 28486292 38 1917 37.0 72.0 54.5 0.7 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_38_28485001 chr3R_28485001 RAL-859 1523 chr3R 28594118 28594129 chr3R 28594197 28594208 5 79 2.5 3.5 3.0 1.2 90 chr3R 28594118 5` UTR CR43440 + chr3R 28594163 5` UTR CR43440 + chr3R 28594208 5` UTR CR43440 + chr3R_5_28590001 chr3R_28590001 RAL-859 1524 chr3R 28616484 28616501 chr3R 28616578 28616595 5 94 1.0 2.0 1.5 2.0 111 chr3R 28616484 intron CG10011 - chr3R 28616540 intron CG10011 - chr3R 28616595 intron CG10011 - chr3R_5_28615001 chr3R_28615001 RAL-859 1525 chr3R 28792872 28792904 chr3R 28797967 28797999 jockey 7 5094 3.0 3.0 3.0 1.8 5127 chr3R 28792872 intergenic not near genes chr3R 28795436 intergenic not near genes chr3R 28797999 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-859 1526 chr3R 28811573 28811598 chr3R 28811718 28811744 6 146 1.5 0.5 1.0 3.0 171 chr3R 28811573 intergenic wdn - chr3R 28811658 intergenic wdn -,CG1646 + chr3R 28811744 intergenic CG1646 +,wdn - chr3R_6_28810001 chr3R_28810001 RAL-859 1527 chr3R 21907534 21907536 chr3R 28831798 28831802 100 6924266 17.5 16.0 16.8 5.6 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_100_25365001 chr3R_25365001 RAL-859 1528 chr3R 21907535 21907536 chr3R 28970250 28970250 4 7062714 17.5 14.0 15.8 0.2 7062715 chr3R 21907535 intergenic CG6678 + chr3R 25438892 intron Fur1 - chr3R 28970250 5` UTR CG14521 - chr3R_4_25435001 chr3R_25435001 RAL-859 1529 chr3R 28992773 28992790 chr3R 28992851 28992868 8 78 4.5 4.0 4.2 1.5 95 chr3R 28992773 intergenic wat - chr3R 28992820 intergenic wat - chr3R 28992868 intergenic wat - chr3R_8_28990001 chr3R_28990001 RAL-859 1530 chr3R 21907534 21907536 chr3R 29013340 29013340 10 7105805 17.5 14.0 15.8 0.6 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_10_25460001 chr3R_25460001 RAL-859 1531 chr3R 29059381 29059392 chr3R 29059475 29059487 5 95 2.5 3.5 3.0 1.2 106 chr3R 29059381 3` UTR Cul5 - chr3R 29059434 3` UTR Cul5 - chr3R 29059487 3` UTR Cul5 - chr3R_5_29055001 chr3R_29055001 RAL-859 1532 chr3R 29213067 29213085 chr3R 29213150 29213168 7 83 2.5 4.5 3.5 1.6 101 chr3R 29213067 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213168 intergenic not near genes chr3R_7_29210001 chr3R_29210001 RAL-859 1533 chr3R 29237254 29237282 chr3R 29239275 29239303 5 2020 15.5 5.0 10.2 0.4 2049 chr3R 29237254 exon CG11951 - chr3R 29238278 intron CG11951 - chr3R 29239303 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-859 1534 chr3R 29240319 29240500 chr3R 29240403 29240584 4 84 0.5 0.0 0.2 3.3 265 chr3R 29240319 5` UTR CG31427 - chr3R 29240452 intergenic CG31427 -,CG31445 - chr3R 29240584 3` UTR CG31445 - chr3R_4_29240001 chr3R_29240001 RAL-859 1535 chr3R 29281266 29281291 chr3R 29281348 29281373 8 82 2.5 5.0 3.8 1.7 107 chr3R 29281266 intergenic not near genes chr3R 29281320 intergenic not near genes chr3R 29281373 intergenic not near genes chr3R_8_29280001 chr3R_29280001 RAL-859 1536 chr3R 29389482 29389510 chr3R 29389562 29389590 10 79 1.5 2.5 2.0 3.3 108 chr3R 29389482 intron Ptp99A + chr3R 29389536 intron Ptp99A + chr3R 29389590 intron Ptp99A + chr3R_10_29385001 chr3R_29385001 RAL-859 1537 chr3R 29402980 29403005 chr3R 29403075 29403098 6 95 0.5 0.5 0.5 4.0 118 chr3R 29402980 intron Ptp99A + chr3R 29403039 intron Ptp99A + chr3R 29403098 intron Ptp99A + chr3R_6_29400001 chr3R_29400001 RAL-859 1538 chr3R 29406622 29406639 chr3R 29407905 29407925 jockey 8 1285 2.5 2.5 2.5 2.3 1303 chr3R 29406622 intron Ptp99A + chr3R 29407274 intron Ptp99A + chr3R 29407925 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-859 1539 chr3R 29449357 29449390 chr3R 29449435 29449468 9 78 1.5 1.0 1.2 4.1 111 chr3R 29449357 intron Ptp99A + chr3R 29449412 intron Ptp99A + chr3R 29449468 intron Ptp99A + chr3R_9_29445001 chr3R_29445001 RAL-859 1540 chr3R 29472013 29472033 chr3R 29472106 29472126 6 93 1.5 2.0 1.8 2.1 113 chr3R 29472013 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472126 intron Ptp99A + chr3R_6_29470001 chr3R_29470001 RAL-859 1541 chr3R 29498900 29498934 chr3R 29499030 29499064 9 130 1.5 2.0 1.8 3.2 164 chr3R 29498900 3` UTR CG2010 + chr3R 29498982 intergenic Trc8 -,CG2010 + chr3R 29499064 3` UTR Trc8 - chr3R_9_29495001 chr3R_29495001 RAL-859 1542 chr3R 29505917 29505926 chr3R 29505994 29506003 5 77 2.5 6.5 4.5 0.9 86 chr3R 29505917 intergenic not near genes chr3R 29505960 intergenic not near genes chr3R 29506003 intergenic not near genes chr3R_5_29505001 chr3R_29505001 RAL-859 1543 chr3R 29606092 29606117 chr3R 29606199 29606224 5 107 1.5 3.0 2.2 1.6 132 chr3R 29606092 intron alph + chr3R 29606158 intron alph + chr3R 29606224 intron alph + chr3R_5_29605001 chr3R_29605001 RAL-859 1544 chr3R 29621072 29621077 chr3R 29621158 29621163 4 86 2.5 8.0 5.2 0.6 91 chr3R 29621072 intergenic CG1907 + chr3R 29621118 intergenic CG1907 + chr3R 29621163 intergenic CG1907 + chr3R_4_29620001 chr3R_29620001 RAL-859 1545 chr3R 29623600 29623622 chr3R 29623684 29623706 7 84 1.5 2.5 2.0 2.3 106 chr3R 29623600 intergenic not near genes chr3R 29623653 intergenic not near genes chr3R 29623706 intergenic not near genes chr3R_7_29620001 chr3R_29620001 RAL-859 1546 chr3R 29643823 29643850 chr3R 29643915 29643942 15 92 2.0 2.5 2.2 4.7 119 chr3R 29643823 intron Dop1R2 - chr3R 29643882 intron Dop1R2 - chr3R 29643942 intron Dop1R2 - chr3R_15_29640001 chr3R_29640001 RAL-859 1547 chr3R 29708559 29708585 chr3R 29708637 29708663 7 78 1.0 2.5 1.8 2.5 104 chr3R 29708559 intergenic not near genes chr3R 29708611 intergenic not near genes chr3R 29708663 intergenic not near genes chr3R_7_29705001 chr3R_29705001 RAL-859 1548 chr3R 29738274 29738299 chr3R 29739741 29739766 hobo 11 1467 1.5 5.0 3.2 2.6 1492 chr3R 29738274 5` UTR CG1969 + chr3R 29739020 intron CG1969 + chr3R 29739766 5` UTR CG1969 + chr3R_11_29735001 chr3R_29735001 RAL-859 1549 chr3R 29758937 29758971 chr3R 29759014 29759049 14 78 3.0 3.0 3.0 3.5 112 chr3R 29758937 3` UTR CR44953 - chr3R 29758993 3` UTR CR44953 - chr3R 29759049 intergenic CR44953 - chr3R_14_29755001 chr3R_29755001 RAL-859 1550 chr3R 29760361 29760387 chr3R 29761562 29761588 pogo 5 1201 2.0 0.5 1.2 2.3 1227 chr3R 29760361 intergenic not near genes chr3R 29760974 intergenic not near genes chr3R 29761588 intergenic not near genes chr3R_5_29760001 chr3R_29760001 RAL-859 1551 chr3R 29826720 29826746 chr3R 29826814 29826840 6 94 1.5 3.5 2.5 1.7 120 chr3R 29826720 intergenic not near genes chr3R 29826780 intergenic Atg16 - chr3R 29826840 intergenic Atg16 - chr3R_6_29825001 chr3R_29825001 RAL-859 1552 chr3R 29882021 29882047 chr3R 29891178 29891204 roo 5 9157 5.0 3.0 4.0 1.0 9183 chr3R 29882021 intron CG31038 + chr3R 29886612 intron CG31038 + chr3R 29891204 intron CG31038 + chr3R_5_29885001 chr3R_29885001 RAL-859 1553 chr3R 29968767 29968793 chr3R 29968951 29968977 10 184 1.5 3.0 2.2 3.1 210 chr3R 29968767 intron TkR99D - chr3R 29968872 intron TkR99D - chr3R 29968977 intron TkR99D - chr3R_10_29965001 chr3R_29965001 RAL-859 1554 chr3R 29986069 29986092 chr3R 29986150 29986173 8 81 4.0 0.5 2.2 2.5 104 chr3R 29986069 exon CG7896 + chr3R 29986121 intron CG7896 + chr3R 29986173 intron CG7896 + chr3R_8_29985001 chr3R_29985001 RAL-859 1555 chr3R 30075568 30075588 chr3R 30075657 30075677 5 89 2.5 1.0 1.8 1.8 109 chr3R 30075568 intron sima + chr3R 30075622 intron sima + chr3R 30075677 intron sima + chr3R_5_30075001 chr3R_30075001 RAL-859 1556 chr3R 30084862 30084882 chr3R 30086329 30086347 hobo 6 1467 1.0 4.0 2.5 1.7 1485 chr3R 30084862 intron sima + chr3R 30085604 intron sima + chr3R 30086347 intron sima + chr3R_6_30085001 chr3R_30085001 RAL-859 1557 chr3R 30156868 30156896 chr3R 30156947 30156975 13 79 1.5 2.5 2.0 4.3 107 chr3R 30156868 intron CG11498 - chr3R 30156922 intron CG11498 - chr3R 30156975 intron CG11498 - chr3R_13_30155001 chr3R_30155001 RAL-859 1558 chr3R 30175695 30175720 chr3R 30175781 30175806 9 86 2.5 1.0 1.8 3.2 111 chr3R 30175695 intergenic CG1983 - chr3R 30175750 intergenic CG1983 - chr3R 30175806 3` UTR CG1983 - chr3R_9_30175001 chr3R_30175001 RAL-859 1559 chr3R 30253691 30253706 chr3R 30253802 30253817 7 111 4.5 3.0 3.8 1.5 126 chr3R 30253691 exon CG18404 + chr3R 30253754 intron CG18404 + chr3R 30253817 intron CG18404 + chr3R_7_30250001 chr3R_30250001 RAL-859 1560 chr3R 30307117 30307154 chr3R 30307198 30307234 8 80 0.5 1.5 1.0 4.0 117 chr3R 30307117 intron hdc + chr3R 30307176 intron hdc + chr3R 30307234 intron hdc + chr3R_8_30305001 chr3R_30305001 RAL-859 1561 chr3R 30396238 30396248 chr3R 30404504 30404513 roo 4 8266 1.5 5.5 3.5 0.9 8275 chr3R 30396238 intergenic not near genes chr3R 30400376 intergenic not near genes chr3R 30404513 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-859 1562 chr3R 30473688 30473703 chr3R 30473804 30473819 6 116 3.0 2.0 2.5 1.7 131 chr3R 30473688 intron PH4alphaEFB + chr3R 30473754 intron PH4alphaEFB + chr3R 30473819 intron PH4alphaEFB + chr3R_6_30470001 chr3R_30470001 RAL-859 1563 chr3R 30480472 30480511 chr3R 30482940 30482979 jockey 13 2468 3.0 1.5 2.2 4.1 2507 chr3R 30480472 intron PH4alphaEFB + chr3R 30481726 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_13_30480001 chr3R_30480001 RAL-859 1564 chr3R 30536499 30536521 chr3R 30536580 30536600 6 80 3.0 0.0 1.5 2.4 101 chr3R 30536499 intron tmod + chr3R 30536550 intron tmod + chr3R 30536600 intron tmod + chr3R_6_30535001 chr3R_30535001 RAL-859 1565 chr3R 30539805 30539836 chr3R 30539882 30539913 5 77 2.5 0.5 1.5 2.0 108 chr3R 30539805 intron tmod + chr3R 30539859 intron tmod + chr3R 30539913 intron tmod + chr3R_5_30535001 chr3R_30535001 RAL-859 1566 chr3R 30643057 30643088 chr3R 30643153 30643183 7 96 1.5 0.0 0.8 3.9 126 chr3R 30643057 intergenic not near genes chr3R 30643120 intergenic not near genes chr3R 30643183 intergenic not near genes chr3R_7_30640001 chr3R_30640001 RAL-859 1567 chr3R 30679519 30679549 chr3R 30686988 30687017 blood 6 7469 3.0 2.0 2.5 1.7 7498 chr3R 30679519 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687017 intergenic not near genes chr3R_6_30680001 chr3R_30680001 RAL-859 1568 chr3R 30689521 30689548 chr3R 30689600 30689627 6 79 2.0 3.0 2.5 1.7 106 chr3R 30689521 intergenic not near genes chr3R 30689574 intergenic not near genes chr3R 30689627 intergenic not near genes chr3R_6_30685001 chr3R_30685001 RAL-859 1569 chr3R 30818814 30818843 chr3R 30820379 30820408 1360 4 1565 0.5 1.5 1.0 2.0 1594 chr3R 30818814 intron cindr + chr3R 30819611 intron cindr + chr3R 30820408 intron cindr + chr3R_4_30815001 chr3R_30815001 RAL-859 1570 chr3R 30955720 30955747 chr3R 30955803 30955831 9 84 2.0 1.5 1.8 3.2 111 chr3R 30955720 intergenic not near genes chr3R 30955776 intergenic not near genes chr3R 30955831 intergenic not near genes chr3R_9_30955001 chr3R_30955001 RAL-859 1571 chr3R 30973138 30973167 chr3R 30973299 30973328 7 161 0.5 5.0 2.8 1.8 190 chr3R 30973138 intron 5-HT7 - chr3R 30973233 intron 5-HT7 - chr3R 30973328 intron 5-HT7 - chr3R_7_30970001 chr3R_30970001 RAL-859 1572 chr3R 30982603 30982630 chr3R 30982695 30982722 8 92 3.0 1.5 2.2 2.5 119 chr3R 30982603 intron 5-HT7 - chr3R 30982662 intron 5-HT7 - chr3R 30982722 intron 5-HT7 - chr3R_8_30980001 chr3R_30980001 RAL-859 1573 chr3R 31024168 31024194 chr3R 31024245 31024271 4 77 0.5 0.5 0.5 2.7 103 chr3R 31024168 intergenic not near genes chr3R 31024220 intergenic not near genes chr3R 31024271 intergenic not near genes chr3R_4_31020001 chr3R_31020001 RAL-859 1574 chr3R 31042111 31042141 chr3R 31042197 31042227 6 87 2.5 0.5 1.5 2.4 116 chr3R 31042111 intron CanA1 + chr3R 31042169 intron CanA1 + chr3R 31042227 intron CanA1 + chr3R_6_31040001 chr3R_31040001 RAL-859 1575 chr3R 31069643 31069676 chr3R 31069738 31069771 8 95 2.0 2.5 2.2 2.5 128 chr3R 31069643 intron Sox100B + chr3R 31069707 intron Sox100B + chr3R 31069771 intron Sox100B + chr3R_8_31065001 chr3R_31065001 RAL-859 1576 chr3R 31074229 31074256 chr3R 31081827 31081854 springer 5 7598 2.5 3.0 2.8 1.3 7625 chr3R 31074229 intron Sox100B + chr3R 31078042 intron Sox100B + chr3R 31081854 intron Sox100B + chr3R_5_31075001 chr3R_31075001 RAL-859 1577 chr3R 31105223 31105243 chr3R 31105480 31105500 7 257 3.5 3.0 3.2 1.7 277 chr3R 31105223 intergenic not near genes chr3R 31105362 intergenic not near genes chr3R 31105500 intergenic not near genes chr3R_7_31105001 chr3R_31105001 RAL-859 1578 chr3R 31109791 31109793 chr3R 31109868 31109870 4 77 2.0 3.5 2.8 1.1 79 chr3R 31109791 intergenic not near genes chr3R 31109830 intergenic not near genes chr3R 31109870 intergenic not near genes chr3R_4_31105001 chr3R_31105001 RAL-859 1579 chr3R 31279377 31279402 chr3R 31285564 31285593 diver 6 6190 1.5 1.5 1.5 2.4 6216 chr3R 31279377 intergenic not near genes chr3R 31282485 intergenic not near genes chr3R 31285593 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-859 1580 chr3R 31413088 31413103 chr3R 31418288 31418303 copia 5 5200 3.5 0.5 2.0 1.7 5215 chr3R 31413088 intron Gprk2 + chr3R 31415696 intron Gprk2 + chr3R 31418303 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-859 1581 chr3R 31422545 31422556 chr3R 31422633 31422647 4 90 0.5 1.5 1.0 2.0 102 chr3R 31422545 intron Gprk2 + chr3R 31422596 intron Gprk2 + chr3R 31422647 intron Gprk2 + chr3R_4_31420001 chr3R_31420001 RAL-859 1582 chr3R 31426879 31426911 chr3R 31426971 31427003 6 92 1.0 3.0 2.0 2.0 124 chr3R 31426879 intron Gprk2 + chr3R 31426941 intron Gprk2 + chr3R 31427003 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-859 1583 chr3R 31435367 31435388 chr3R 31435519 31435540 5 152 2.0 2.0 2.0 1.7 173 chr3R 31435367 intron Gprk2 + chr3R 31435454 intron Gprk2 + chr3R 31435540 intron Gprk2 + chr3R_5_31435001 chr3R_31435001 RAL-859 1584 chr3R 31442273 31442296 chr3R 31442358 31442381 9 85 2.0 3.0 2.5 2.6 108 chr3R 31442273 intron Gprk2 + chr3R 31442327 intron Gprk2 + chr3R 31442381 intron Gprk2 + chr3R_9_31440001 chr3R_31440001 RAL-859 1585 chr3R 31448603 31448620 chr3R 31448679 31448696 6 76 3.5 1.5 2.5 1.7 93 chr3R 31448603 intron Gprk2 + chr3R 31448650 intron Gprk2 + chr3R 31448696 intron Gprk2 + chr3R_6_31445001 chr3R_31445001 RAL-859 1586 chr3R 31539346 31539356 chr3R 31539431 31539440 4 85 1.5 5.0 3.2 1.0 94 chr3R 31539346 intergenic not near genes chr3R 31539393 intergenic not near genes chr3R 31539440 intergenic not near genes chr3R_4_31535001 chr3R_31535001 RAL-859 1587 chr3R 31637884 31637892 chr3R 31637972 31637980 5 88 2.0 5.0 3.5 1.1 96 chr3R 31637884 intron kek6 + chr3R 31637932 intron kek6 + chr3R 31637980 intron kek6 + chr3R_5_31635001 chr3R_31635001 RAL-859 1588 chr3R 31670617 31670638 chr3R 31670711 31670731 9 94 1.5 2.5 2.0 3.0 114 chr3R 31670617 intron CG1815 + chr3R 31670674 intron CG1815 + chr3R 31670731 intron CG1815 + chr3R_9_31670001 chr3R_31670001 RAL-859 1589 chr3R 31691530 31691556 chr3R 31696296 31696322 Doc 12 4766 4.5 4.5 4.5 2.2 4792 chr3R 31691530 intergenic not near genes chr3R 31693926 intergenic not near genes chr3R 31696322 intergenic not near genes chr3R_12_31690001 chr3R_31690001 RAL-859 1590 chr3R 31699723 31699746 chr3R 31699805 31699828 6 81 3.0 3.0 3.0 1.5 105 chr3R 31699723 intergenic not near genes chr3R 31699776 intergenic not near genes chr3R 31699828 intergenic not near genes chr3R_6_31695001 chr3R_31695001 RAL-859 1591 chr3R 31831538 31831561 chr3R 31831617 31831637 13 79 2.0 5.5 3.8 2.7 99 chr3R 31831538 intron RhoGAP100F + chr3R 31831588 intron RhoGAP100F + chr3R 31831637 intron RhoGAP100F + chr3R_13_31830001 chr3R_31830001 RAL-859 1592 chr3R 31865048 31865064 chr3R 31865138 31865155 6 90 0.0 3.5 1.8 2.1 107 chr3R 31865048 intron heph - chr3R 31865102 intron heph - chr3R 31865155 exon heph - chr3R_6_31865001 chr3R_31865001 RAL-859 1593 chr3R 31870660 31870686 chr3R 31870751 31870777 6 91 2.5 3.0 2.8 1.6 117 chr3R 31870660 intron heph - chr3R 31870718 intron heph - chr3R 31870777 intron heph - chr3R_6_31870001 chr3R_31870001 RAL-859 1594 chr3R 31925688 31925719 chr3R 31925764 31925795 9 76 1.5 1.0 1.2 4.1 107 chr3R 31925688 intron heph - chr3R 31925742 intron heph - chr3R 31925795 intron heph - chr3R_9_31925001 chr3R_31925001 RAL-859 1595 chr3R 31949505 31949538 chr3R 31949591 31949624 11 85 1.0 0.5 0.8 6.1 119 chr3R 31949505 intron heph - chr3R 31949564 intron heph - chr3R 31949624 intron heph - chr3R_11_31945001 chr3R_31945001 RAL-859 1596 chr3R 31991112 31991131 chr3R 31991191 31991210 4 79 1.0 1.5 1.2 1.8 98 chr3R 31991112 intron heph - chr3R 31991161 intron heph - chr3R 31991210 intron heph - chr3R_4_31990001 chr3R_31990001 RAL-859 1597 chr3R 31997992 31998025 chr3R 32005462 32005495 blood 9 7470 2.5 1.5 2.0 3.0 7503 chr3R 31997992 intron heph - chr3R 32001744 intron heph - chr3R 32005495 intron heph - chr3R_9_32000001 chr3R_32000001 RAL-859 1598 chr3R 32022324 32022355 chr3R 32022426 32022457 9 101 2.5 3.0 2.8 2.4 133 chr3R 32022324 5` UTR CR45557 + chr3R 32022390 5` UTR CR45557 + chr3R 32022457 5` UTR CR45557 + chr3R_9_32020001 chr3R_32020001 RAL-859 1599 chr4 319987 320020 chr4 328163 328196 Stalker2 5 8176 2.0 0.5 1.2 2.3 8209 chr4 319987 3` UTR CG32850 + chr4 324092 intron CG32850 + chr4 328196 3` UTR,3` UTR CG32850 +,PMCA - chr4_5_320001 chr4_320001 RAL-859 1600 chr4 671614 671636 chr4 680196 680219 Tirant 5 8583 1.5 4.5 3.0 1.2 8605 chr4 671614 intron CG11360 + chr4 675916 intron CG11360 + chr4 680219 intron CG11360 + chr4_5_675001 chr4_675001 RAL-859 1601 chr4 694908 694934 chr4 694989 695015 5 81 0.5 2.5 1.5 2.0 107 chr4 694908 intron myo - chr4 694962 intron myo - chr4 695015 intron myo - chr4_5_690001 chr4_690001 RAL-859 1602 chr4 847096 847123 chr4 847291 847318 4 194 1.0 1.0 1.0 2.0 222 chr4 847096 intergenic not near genes chr4 847207 intergenic not near genes chr4 847318 intergenic not near genes chr4_4_845001 chr4_845001 RAL-859 1603 chr4 1171951 1171970 chr4 1172216 1172235 8 265 3.5 3.5 3.5 1.8 284 chr4 1171951 intergenic not near genes chr4 1172093 intergenic pho - chr4 1172235 intergenic pho - chr4_8_1170001 chr4_1170001 RAL-859 1604 chrX 318470 318499 chrX 323556 323585 flea 6 5086 2.0 0.5 1.2 2.7 5115 chrX 318470 intron,intron CG3777 +,CG32816 - chrX 321028 intron,intron CG3777 +,CG32816 - chrX 323585 intron,intron CG3777 +,CG32816 - chrX_6_320001 chrX_320001 RAL-859 1605 chrX 325631 325642 chrX 325716 325726 4 85 1.0 1.5 1.2 1.8 95 chrX 325631 intron,intron CG3777 +,CG32816 - chrX 325678 intron,intron CG3777 +,CG32816 - chrX 325726 intron,intron CG3777 +,CG32816 - chrX_4_325001 chrX_325001 RAL-859 1606 chrX 428416 428452 chrX 434601 434636 3S18 7 6185 4.5 1.0 2.8 1.8 6220 chrX 428416 intron CG32816 - chrX 431526 intron CG32816 - chrX 434636 intron CG32816 - chrX_7_430001 chrX_430001 RAL-859 1607 chrX 440995 441024 chrX 441073 441102 6 78 2.0 2.0 2.0 2.0 107 chrX 440995 intron CG32816 - chrX 441048 intron CG32816 - chrX 441102 intron CG32816 - chrX_6_440001 chrX_440001 RAL-859 1608 chrX 450377 450392 chrX 450455 450470 4 78 1.0 3.5 2.2 1.2 93 chrX 450377 intron CG32816 - chrX 450424 intron CG32816 - chrX 450470 intron CG32816 - chrX_4_450001 chrX_450001 RAL-859 1609 chrX 551422 551452 chrX 558983 559014 412 14 7562 1.5 3.0 2.2 4.4 7592 chrX 551422 intron Appl + chrX 555218 intron Appl + chrX 559014 intron Appl + chrX_14_555001 chrX_555001 RAL-859 1610 chrX 802301 802320 chrX 802376 802397 8 76 4.5 3.5 4.0 1.6 96 chrX 802301 exon CG13359 - chrX 802349 exon CG13359 - chrX 802397 exon CG13359 - chrX_8_800001 chrX_800001 RAL-859 1611 chrX 827607 827630 chrX 835399 835422 roo 4 7792 1.5 4.0 2.8 1.1 7815 chrX 827607 intron CG43867 - chrX 831514 intron CG43867 - chrX 835422 intron CG43867 - chrX_4_830001 chrX_830001 RAL-859 1612 chrX 906701 906734 chrX 908490 908523 S-element 8 1789 2.5 4.5 3.5 1.8 1822 chrX 906701 intron CG43867 - chrX 907612 intron CG43867 - chrX 908523 intron CG43867 - chrX_8_905001 chrX_905001 RAL-859 1613 chrX 1163309 1163319 chrX 1163387 1163397 4 78 2.5 4.0 3.2 1.0 88 chrX 1163309 intergenic CG34320 - chrX 1163353 intergenic CG34320 - chrX 1163397 intergenic CG34320 - chrX_4_1160001 chrX_1160001 RAL-859 1614 chrX 1200051 1200065 chrX 1200127 1200143 4 78 0.5 1.5 1.0 2.0 92 chrX 1200051 intron CG14625 + chrX 1200097 intron CG14625 + chrX 1200143 intron CG14625 + chrX_4_1200001 chrX_1200001 RAL-859 1615 chrX 1253739 1253759 chrX 1253821 1253841 8 82 3.0 2.5 2.8 2.1 102 chrX 1253739 intron Atf3 - chrX 1253790 intron Atf3 - chrX 1253841 intron Atf3 - chrX_8_1250001 chrX_1250001 RAL-859 1616 chrX 1392801 1392821 chrX 1392917 1392937 8 116 2.0 4.0 3.0 2.0 136 chrX 1392801 3` UTR CG32813 + chrX 1392869 intergenic CG32813 +,CG11448 + chrX 1392937 intergenic CG32813 +,CG11448 + chrX_8_1390001 chrX_1390001 RAL-859 1617 chrX 1440095 1440128 chrX 1440196 1440229 9 100 2.5 3.0 2.8 2.4 134 chrX 1440095 exon futsch + chrX 1440162 exon futsch + chrX 1440229 exon futsch + chrX_9_1440001 chrX_1440001 RAL-859 1618 chrX 1518039 1518060 chrX 1523441 1523462 jockey 4 5402 3.5 2.0 2.8 1.1 5423 chrX 1518039 intergenic inc + chrX 1520750 intergenic not near genes chrX 1523462 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-859 1619 chrX 1954886 1954918 chrX 1962826 1962855 Stalker2 8 7940 0.5 0.5 0.5 5.3 7969 chrX 1954886 intron Hr4 + chrX 1958870 intron Hr4 + chrX 1962855 intron Hr4 + chrX_8_1955001 chrX_1955001 RAL-859 1620 chrX 2023959 2023983 chrX 2024082 2024106 6 123 11.0 7.5 9.2 0.6 147 chrX 2023959 3` UTR,3` UTR east +,Actn - chrX 2024032 3` UTR,3` UTR east +,Actn - chrX 2024106 3` UTR,3` UTR east +,Actn - chrX_6_2020001 chrX_2020001 RAL-859 1621 chrX 2020862 2020896 chrX 2025581 2025615 7 4719 21.0 14.5 17.8 0.4 4753 chrX 2020862 exon east + chrX 2023238 3` UTR east + chrX 2025615 exon Actn - chrX_7_2020001 chrX_2020001 RAL-859 1622 chrX 2069371 2069402 chrX 2069471 2069502 8 100 1.5 1.0 1.2 3.6 131 chrX 2069371 intron,exon CG4199 -,CG4194 + chrX 2069436 intron,3` UTR CG4199 -,CG4194 + chrX 2069502 intron,3` UTR CG4199 -,CG4194 + chrX_8_2065001 chrX_2065001 RAL-859 1623 chrX 2399838 2399862 chrX 2408191 2408214 roo 5 8352 3.0 0.0 1.5 2.0 8376 chrX 2399838 intergenic not near genes chrX 2404026 intergenic not near genes chrX 2408214 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-859 1624 chrX 2578826 2578843 chrX 2578918 2578935 5 92 3.0 2.5 2.8 1.3 109 chrX 2578826 intergenic Pdfr +,Vha36-3 - chrX 2578880 intergenic Vha36-3 -,Pdfr + chrX 2578935 intergenic Vha36-3 -,Pdfr + chrX_5_2575001 chrX_2575001 RAL-859 1625 chrX 2664386 2664420 chrX 2665532 2665566 1360 9 1146 1.5 2.5 2.0 3.0 1180 chrX 2664386 intron sgg + chrX 2664976 intron sgg + chrX 2665566 intron sgg + chrX_9_2660001 chrX_2660001 RAL-859 1626 chrX 2803497 2803512 chrX 2803640 2803652 7 142 4.0 0.5 2.2 2.2 155 chrX 2803497 intron kirre + chrX 2803574 intron kirre + chrX 2803652 intron kirre + chrX_7_2800001 chrX_2800001 RAL-859 1627 chrX 2844898 2844927 chrX 2852308 2852337 mdg1 4 7410 2.0 0.0 1.0 2.0 7439 chrX 2844898 intron kirre + chrX 2848618 intron kirre + chrX 2852337 intron kirre + chrX_4_2845001 chrX_2845001 RAL-859 1628 chrX 2879026 2879056 chrX 2879113 2879142 9 87 1.5 0.5 1.0 4.5 116 chrX 2879026 intron kirre + chrX 2879084 intron kirre + chrX 2879142 intron kirre + chrX_9_2875001 chrX_2875001 RAL-859 1629 chrX 2888113 2888142 chrX 2888191 2888220 7 78 2.5 2.0 2.2 2.2 107 chrX 2888113 intron kirre + chrX 2888166 intron kirre + chrX 2888220 intron kirre + chrX_7_2885001 chrX_2885001 RAL-859 1630 chrX 3058021 3058046 chrX 3058262 3058287 pogo 4 241 2.0 1.0 1.5 1.6 266 chrX 3058021 intron kirre + chrX 3058154 intron kirre + chrX 3058287 intron kirre + chrX_4_3055001 chrX_3055001 RAL-859 1631 chrX 3075636 3075646 chrX 3080943 3080953 Transpac 4 5307 0.0 0.0 0.0 4.0 5317 chrX 3075636 intron kirre + chrX 3078294 intron kirre + chrX 3080953 intron kirre + chrX_4_3075001 chrX_3075001 RAL-859 1632 chrX 3107233 3107233 chrX 16983076 16983077 4 13875844 1.0 8.0 4.5 0.7 13875844 chrX 3107233 intron kirre + chrX 10045155 intron,3` UTR Cht6 +,CR45185 - chrX 16983077 intron CG45002 - chrX_4_10045001 chrX_10045001 RAL-859 1633 chrX 3107752 3107780 chrX 3107841 3107869 5 89 0.5 1.0 0.8 2.8 117 chrX 3107752 intron kirre + chrX 3107810 intron kirre + chrX 3107869 intron kirre + chrX_5_3105001 chrX_3105001 RAL-859 1634 chrX 3203468 3203492 chrX 3203666 3203691 9 199 4.0 1.0 2.5 2.6 223 chrX 3203468 intron dnc + chrX 3203580 intron dnc + chrX 3203691 intron dnc + chrX_9_3200001 chrX_3200001 RAL-859 1635 chrX 3206018 3206031 chrX 3206098 3206111 5 80 14.0 11.0 12.5 0.4 93 chrX 3206018 intron dnc + chrX 3206064 intron dnc + chrX 3206111 intron dnc + chrX_5_3205001 chrX_3205001 RAL-859 1636 chrX 3218516 3218537 chrX 3227665 3227686 roo 4 9149 1.0 1.0 1.0 2.0 9170 chrX 3218516 intron dnc + chrX 3223101 intron dnc + chrX 3227686 intron dnc + chrX_4_3220001 chrX_3220001 RAL-859 1637 chrX 3306066 3306351 chrX 3306177 3306432 8 107 5.0 3.0 4.0 1.6 366 chrX 3306066 intron dnc + chrX 3306249 intron dnc + chrX 3306432 intron dnc + chrX_8_3305001 chrX_3305001 RAL-859 1638 chrX 3398146 3398378 chrX 3398227 3398455 7 80 1.0 3.0 2.0 2.3 309 chrX 3398146 intron,intron CR44999 +,CG12535 - chrX 3398300 intron,intron CR44999 +,CG12535 - chrX 3398455 intron,intron CR44999 +,CG12535 - chrX_7_3395001 chrX_3395001 RAL-859 1639 chrX 3415017 3415051 chrX 3421202 3421236 3S18 4 6185 0.5 1.0 0.8 2.2 6219 chrX 3415017 intron,intron CR44999 +,CG12535 - chrX 3418126 intron,intron CR44999 +,CG12535 - chrX 3421236 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-859 1640 chrX 3493092 3493125 chrX 3502250 3502284 roo 5 9159 1.5 0.5 1.0 2.5 9192 chrX 3493092 intron,intron CR44999 +,Gas8 - chrX 3497688 intron,intron CR44999 +,Gas8 - chrX 3502284 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-859 1641 chrX 3597551 3597572 chrX 3619719 3619740 roo 8 22168 5.0 3.0 4.0 1.6 22189 chrX 3597551 intron AstA-R1 + chrX 3608646 intron AstA-R1 + chrX 3619740 intron AstA-R1 + chrX_8_3605001 chrX_3605001 RAL-859 1642 chrX 3726766 3726794 chrX 3730163 3730191 NOF 5 3397 0.5 0.5 0.5 3.3 3425 chrX 3726766 intron tlk + chrX 3728478 intron tlk + chrX 3730191 intron tlk + chrX_5_3725001 chrX_3725001 RAL-859 1643 chrX 3866112 3866129 chrX 3866190 3866207 5 78 0.5 2.5 1.5 2.0 95 chrX 3866112 intron yin - chrX 3866160 intron yin - chrX 3866207 intron yin - chrX_5_3865001 chrX_3865001 RAL-859 1644 chrX 3922135 3922160 chrX 3922410 3922435 5 275 0.0 3.0 1.5 2.0 300 chrX 3922135 intron CG42541 - chrX 3922285 intron CG42541 - chrX 3922435 intron CG42541 - chrX_5_3920001 chrX_3920001 RAL-859 1645 chrX 3986862 3986888 chrX 3994495 3994521 412 6 7633 1.0 1.5 1.2 2.7 7659 chrX 3986862 intergenic not near genes chrX 3990692 intergenic not near genes chrX 3994521 intergenic not near genes chrX_6_3990001 chrX_3990001 RAL-859 1646 chrX 4115223 4115236 chrX 4115302 4115315 4 79 2.0 2.5 2.2 1.2 92 chrX 4115223 intron Tip60 - chrX 4115269 intron Tip60 - chrX 4115315 intron Tip60 - chrX_4_4115001 chrX_4115001 RAL-859 1647 chrX 4132672 4132692 chrX 4132840 4132860 4 168 0.5 2.5 1.5 1.6 188 chrX 4132672 3` UTR GlcAT-I + chrX 4132766 3` UTR GlcAT-I + chrX 4132860 intergenic Fas2 -,GlcAT-I + chrX_4_4130001 chrX_4130001 RAL-859 1648 chrX 4157896 4157914 chrX 4164949 4164967 297 6 7053 3.0 2.5 2.8 1.6 7071 chrX 4157896 intron Fas2 - chrX 4161432 intron Fas2 - chrX 4164967 intron Fas2 - chrX_6_4160001 chrX_4160001 RAL-859 1649 chrX 4324392 4324413 chrX 4324469 4324490 4 76 1.0 4.0 2.5 1.1 98 chrX 4324392 intron norpA + chrX 4324441 intron norpA + chrX 4324490 intron norpA + chrX_4_4320001 chrX_4320001 RAL-859 1650 chrX 4396989 4397011 chrX 4397074 4397094 6 85 0.5 4.0 2.2 1.9 105 chrX 4396989 intron CR32773 - chrX 4397042 intron CR32773 - chrX 4397094 intron CR32773 - chrX_6_4395001 chrX_4395001 RAL-859 1651 chrX 4613543 4613573 chrX 4613633 4613663 8 90 3.0 1.5 2.2 2.5 120 chrX 4613543 intergenic not near genes chrX 4613603 intergenic not near genes chrX 4613663 intergenic not near genes chrX_8_4610001 chrX_4610001 RAL-859 1652 chrX 4700395 4700425 chrX 4700738 4700768 jockey 9 343 1.5 1.0 1.2 4.1 373 chrX 4700395 3` UTR ctp + chrX 4700582 3` UTR ctp + chrX 4700768 3` UTR ctp + chrX_9_4700001 chrX_4700001 RAL-859 1653 chrX 4723579 4723586 chrX 4723659 4723665 4 80 2.5 5.0 3.8 0.8 86 chrX 4723579 intron Proc-R + chrX 4723622 intron Proc-R + chrX 4723665 intron Proc-R + chrX_4_4720001 chrX_4720001 RAL-859 1654 chrX 4792382 4792403 chrX 4792815 4792836 jockey 4 433 2.0 4.0 3.0 1.0 454 chrX 4792382 intergenic not near genes chrX 4792609 intergenic not near genes chrX 4792836 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-859 1655 chrX 5096276 5096306 chrX 5103841 5103871 springer 7 7565 1.5 1.0 1.2 3.2 7595 chrX 5096276 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103871 intron,intron CG15465 +,rg + chrX_7_5100001 chrX_5100001 RAL-859 1656 chrX 5131402 5131427 chrX 5131483 5131508 4 81 4.0 3.0 3.5 0.9 106 chrX 5131402 intron,intron CG15465 +,rg + chrX 5131455 intron,intron CG15465 +,rg + chrX 5131508 intron,intron CG15465 +,rg + chrX_4_5130001 chrX_5130001 RAL-859 1657 chrX 5134796 5134829 chrX 5134897 5134930 9 101 1.5 4.5 3.0 2.2 134 chrX 5134796 intron,intron CG15465 +,rg + chrX 5134863 intron,intron CG15465 +,rg + chrX 5134930 intron,intron CG15465 +,rg + chrX_9_5130001 chrX_5130001 RAL-859 1658 chrX 5220393 5220413 chrX 5220634 5220654 5 241 0.0 0.5 0.2 4.2 261 chrX 5220393 intron,intron CG15465 +,rg + chrX 5220524 intron,intron CG15465 +,rg + chrX 5220654 intron,intron CG15465 +,rg + chrX_5_5220001 chrX_5220001 RAL-859 1659 chrX 5480545 5480562 chrX 5480623 5480640 6 78 2.5 2.0 2.2 1.9 95 chrX 5480545 intron SPR + chrX 5480592 intron SPR + chrX 5480640 intron SPR + chrX_6_5480001 chrX_5480001 RAL-859 1660 chrX 5481065 5481087 chrX 5485033 5485054 I-element 4 3968 0.0 3.0 1.5 1.6 3989 chrX 5481065 intron SPR + chrX 5483060 intron SPR + chrX 5485054 intron SPR + chrX_4_5480001 chrX_5480001 RAL-859 1661 chrX 5714154 5714183 chrX 5714231 5714260 7 77 1.5 1.0 1.2 3.2 106 chrX 5714154 intron CG33080 - chrX 5714207 intron CG33080 - chrX 5714260 intron CG33080 - chrX_7_5710001 chrX_5710001 RAL-859 1662 chrX 5804979 5804999 chrX 5805188 5805208 6 209 21.0 17.0 19.0 0.3 229 chrX 5804979 exon Cpr5C + chrX 5805094 exon Cpr5C + chrX 5805208 exon Cpr5C + chrX_6_5805001 chrX_5805001 RAL-859 1663 chrX 5883660 5883814 chrX 5883772 5884055 10 151 1.0 1.0 1.0 5.0 395 chrX 5883660 intron CR45668 - chrX 5883858 intron CR45668 - chrX 5884055 intron CR45668 - chrX_10_5880001 chrX_5880001 RAL-859 1664 chrX 5884163 5884191 chrX 5884404 5884432 pogo 4 241 2.5 2.0 2.2 1.2 269 chrX 5884163 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884432 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-859 1665 chrX 5886447 5886478 chrX 5886717 5886748 7 269 1.0 1.5 1.2 3.2 301 chrX 5886447 intron CR45668 - chrX 5886598 intron CR45668 - chrX 5886748 intron CR45668 - chrX_7_5885001 chrX_5885001 RAL-859 1666 chrX 6306554 6306578 chrX 6306629 6306655 5 76 2.0 1.5 1.8 1.8 101 chrX 6306554 3` UTR CG3823 + chrX 6306604 3` UTR CG3823 + chrX 6306655 3` UTR CG3823 + chrX_5_6305001 chrX_6305001 RAL-859 1667 chrX 6335220 6335240 chrX 6337730 6337750 Tirant 5 2510 0.0 4.5 2.2 1.6 2530 chrX 6335220 intergenic not near genes chrX 6336485 intergenic not near genes chrX 6337750 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-859 1668 chrX 6392881 6392903 chrX 6397646 6397668 Doc 7 4765 4.0 2.5 3.2 1.7 4787 chrX 6392881 intergenic not near genes chrX 6395274 intergenic not near genes chrX 6397668 intergenic not near genes chrX_7_6395001 chrX_6395001 RAL-859 1669 chrX 6473492 6473522 chrX 6473729 6473759 5 237 4.0 0.5 2.2 1.6 267 chrX 6473492 intron CG42340 - chrX 6473626 intron CG42340 - chrX 6473759 intron CG42340 - chrX_5_6470001 chrX_6470001 RAL-859 1670 chrX 6562816 6562851 chrX 6571298 6571333 Tirant 6 8482 4.0 2.5 3.2 1.4 8517 chrX 6562816 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571333 intron CG34417 + chrX_6_6565001 chrX_6565001 RAL-859 1671 chrX 6859565 6859574 chrX 6859978 6859987 4 413 3.0 0.0 1.5 1.6 422 chrX 6859565 intron CG14434 - chrX 6859776 intron CG14434 - chrX 6859987 intron CG14434 - chrX_4_6855001 chrX_6855001 RAL-859 1672 chrX 6979536 6979556 chrX 6979978 6979998 6 441 1.0 2.5 1.8 2.1 462 chrX 6979536 intron ogre - chrX 6979767 intron ogre - chrX 6979998 intron ogre - chrX_6_6975001 chrX_6975001 RAL-859 1673 chrX 6989502 6989534 chrX 6989589 6989621 4 87 1.0 2.0 1.5 1.6 119 chrX 6989502 intron ogre - chrX 6989562 intron ogre - chrX 6989621 intron ogre - chrX_4_6985001 chrX_6985001 RAL-859 1674 chrX 7023604 7023626 chrX 7030993 7031016 Tabor 9 7390 3.0 3.5 3.2 2.1 7412 chrX 7023604 intron CG12541 - chrX 7027310 intron CG12541 - chrX 7031016 intron CG12541 - chrX_9_7025001 chrX_7025001 RAL-859 1675 chrX 7125246 7125263 chrX 7134404 7134421 roo 4 9158 2.5 1.5 2.0 1.3 9175 chrX 7125246 intergenic not near genes chrX 7129834 intergenic not near genes chrX 7134421 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-859 1676 chrX 7346841 7346869 chrX 7346920 7346948 8 79 0.5 3.0 1.8 2.9 107 chrX 7346841 intron,intron,3` UTR CR44357 -,CG1677 -,CG15034 - chrX 7346894 intron,intron,3` UTR CR44357 -,CG1677 -,CG15034 - chrX 7346948 intron,intron,3` UTR CR44357 -,CG1677 -,CG15034 - chrX_8_7345001 chrX_7345001 RAL-859 1677 chrX 7570636 7570665 chrX 7570770 7570799 5 134 1.0 1.0 1.0 2.5 163 chrX 7570636 intergenic not near genes chrX 7570718 intergenic not near genes chrX 7570799 intergenic not near genes chrX_5_7570001 chrX_7570001 RAL-859 1678 chrX 7702905 7702936 chrX 7703344 7703375 jockey 8 439 1.5 2.5 2.0 2.7 470 chrX 7702905 intron CHES-1-like - chrX 7703140 intron CHES-1-like - chrX 7703375 intron CHES-1-like - chrX_8_7700001 chrX_7700001 RAL-859 1679 chrX 7832440 7832465 chrX 7832529 7832554 6 89 0.0 2.0 1.0 3.0 114 chrX 7832440 intron CG1402 + chrX 7832497 intron CG1402 + chrX 7832554 intron CG1402 + chrX_6_7830001 chrX_7830001 RAL-859 1680 chrX 7845729 7845757 chrX 7847218 7847247 hopper2 7 1490 2.5 1.0 1.8 2.5 1518 chrX 7845729 intergenic not near genes chrX 7846488 intergenic not near genes chrX 7847247 intergenic not near genes chrX_7_7845001 chrX_7845001 RAL-859 1681 chrX 7881851 7881877 chrX 7881933 7881959 5 82 1.5 1.0 1.2 2.3 108 chrX 7881851 intergenic Ir7f -,Ir7e - chrX 7881905 intergenic Ir7f -,Ir7e - chrX 7881959 3` UTR Ir7f - chrX_5_7880001 chrX_7880001 RAL-859 1682 chrX 8031427 8031455 chrX 8035736 8035764 Juan 10 4309 2.0 2.5 2.2 3.1 4337 chrX 8031427 intergenic not near genes chrX 8033596 intergenic not near genes chrX 8035764 3` UTR CG2233 - chrX_10_8030001 chrX_8030001 RAL-859 1683 chrX 8364846 8364874 chrX 8365243 8365271 BS 8 397 1.0 1.5 1.2 3.6 425 chrX 8364846 intron nAChRalpha3 - chrX 8365058 intron nAChRalpha3 - chrX 8365271 intron nAChRalpha3 - chrX_8_8365001 chrX_8365001 RAL-859 1684 chrX 8513091 8513125 chrX 8513358 8513392 7 267 0.5 0.5 0.5 4.7 301 chrX 8513091 intron CG33181 + chrX 8513242 intron CG33181 + chrX 8513392 intron CG33181 + chrX_7_8510001 chrX_8510001 RAL-859 1685 chrX 8726180 8726209 chrX 8726277 8726306 5 97 1.5 0.0 0.8 2.8 126 chrX 8726180 intergenic CR43297 + chrX 8726243 intergenic CR43297 + chrX 8726306 intergenic CR43297 + chrX_5_8725001 chrX_8725001 RAL-859 1686 chrX 8744291 8744312 chrX 8744443 8744463 4 151 1.5 3.0 2.2 1.2 172 chrX 8744291 intergenic not near genes chrX 8744377 intergenic not near genes chrX 8744463 intergenic not near genes chrX_4_8740001 chrX_8740001 RAL-859 1687 chrX 8922342 8922363 chrX 8922776 8922797 jockey 8 434 3.5 4.5 4.0 1.6 455 chrX 8922342 intron rdgA + chrX 8922570 intron rdgA + chrX 8922797 intron rdgA + chrX_8_8920001 chrX_8920001 RAL-859 1688 chrX 9273025 9273044 chrX 9273106 9273125 6 81 0.0 1.0 0.5 4.0 100 chrX 9273025 intergenic Cfp1 -,CG16892 + chrX 9273075 intergenic Cfp1 -,CG16892 + chrX 9273125 intergenic Cfp1 -,CG16892 + chrX_6_9270001 chrX_9270001 RAL-859 1689 chrX 9473265 9473277 chrX 9473367 9473379 4 102 2.0 4.0 3.0 1.0 114 chrX 9473265 intron mgl - chrX 9473322 intron mgl - chrX 9473379 intron mgl - chrX_4_9470001 chrX_9470001 RAL-859 1690 chrX 9527929 9527946 chrX 9528004 9528022 4 76 2.5 1.0 1.8 1.4 93 chrX 9527929 intron CG32700 - chrX 9527976 intron CG32700 - chrX 9528022 intron CG32700 - chrX_4_9525001 chrX_9525001 RAL-859 1691 chrX 9575791 9575824 chrX 9576115 9576148 mdg3 7 323 2.5 4.5 3.5 1.6 357 chrX 9575791 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_7_9575001 chrX_9575001 RAL-859 1692 chrX 10369107 10369119 chrX 10369274 10369286 4 167 2.5 1.5 2.0 1.3 179 chrX 10369107 intron CG17841 + chrX 10369196 intron CG17841 + chrX 10369286 intron CG17841 + chrX_4_10365001 chrX_10365001 RAL-859 1693 chrX 10392161 10392190 chrX 10392240 10392269 5 77 2.5 2.5 2.5 1.4 108 chrX 10392161 intron flw + chrX 10392215 intron flw + chrX 10392269 intron flw + chrX_5_10390001 chrX_10390001 RAL-859 1694 chrX 10453077 10453103 chrX 10453268 10453294 5 191 0.0 1.0 0.5 3.3 217 chrX 10453077 intron CG32683 - chrX 10453186 intron CG32683 - chrX 10453294 intron CG32683 - chrX_5_10450001 chrX_10450001 RAL-859 1695 chrX 10550349 10550366 chrX 10550427 10550444 4 78 2.0 3.0 2.5 1.1 95 chrX 10550349 intron spri - chrX 10550396 intron spri - chrX 10550444 intron spri - chrX_4_10550001 chrX_10550001 RAL-859 1696 chrX 10550859 10550887 chrX 10552325 10552354 hobo 10 1467 2.0 4.5 3.2 2.4 1495 chrX 10550859 intron spri - chrX 10551606 intron spri - chrX 10552354 intron spri - chrX_10_10550001 chrX_10550001 RAL-859 1697 chrX 10669762 10669792 chrX 10669849 10669879 7 87 3.0 1.5 2.2 2.2 117 chrX 10669762 intron X11Lbeta + chrX 10669820 intron X11Lbeta + chrX 10669879 intron X11Lbeta + chrX_7_10665001 chrX_10665001 RAL-859 1698 chrX 10686052 10686080 chrX 10691189 10691216 roo 7 5137 1.0 1.5 1.2 3.2 5164 chrX 10686052 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691216 intron X11Lbeta + chrX_7_10685001 chrX_10685001 RAL-859 1699 chrX 10719130 10719149 chrX 10719214 10719233 5 84 0.0 3.5 1.8 1.8 103 chrX 10719130 intron CG32676 - chrX 10719182 intron CG32676 - chrX 10719233 intron CG32676 - chrX_5_10715001 chrX_10715001 RAL-859 1700 chrX 10772679 10772690 chrX 10772762 10772772 Tirant 5 83 1.5 2.5 2.0 1.7 93 chrX 10772679 intron CG15211 + chrX 10772726 intron CG15211 + chrX 10772772 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-859 1701 chrX 11194451 11194462 chrX 11201872 11201881 gypsy5 5 7420 2.5 6.5 4.5 0.9 7430 chrX 11194451 intergenic not near genes chrX 11198166 intergenic not near genes chrX 11201881 intergenic CG11106 + chrX_5_11195001 chrX_11195001 RAL-859 1702 chrX 11312077 11312088 chrX 11319430 11319441 Stalker2 4 7353 1.0 0.5 0.8 2.2 7364 chrX 11312077 intergenic not near genes chrX 11315759 intergenic not near genes chrX 11319441 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-859 1703 chrX 11554860 11554888 chrX 11555277 11555305 4 416 7.5 13.0 10.2 0.4 445 chrX 11554860 3` UTR Drak + chrX 11555082 3` UTR CG1572 - chrX 11555305 3` UTR CG1572 - chrX_4_11555001 chrX_11555001 RAL-859 1704 chrX 11633416 11633442 chrX 11640470 11640494 297 8 7054 2.5 0.5 1.5 3.2 7078 chrX 11633416 intron Ptp10D + chrX 11636955 intron Ptp10D + chrX 11640494 intron Ptp10D + chrX_8_11635001 chrX_11635001 RAL-859 1705 chrX 11684869 11684900 chrX 11684995 11685026 5 126 1.5 1.5 1.5 2.0 157 chrX 11684869 intron bif + chrX 11684948 intron bif + chrX 11685026 intron bif + chrX_5_11680001 chrX_11680001 RAL-859 1706 chrX 11690120 11690126 chrX 11690204 11690210 5 84 1.0 3.5 2.2 1.6 90 chrX 11690120 intron bif + chrX 11690165 intron bif + chrX 11690210 intron bif + chrX_5_11690001 chrX_11690001 RAL-859 1707 chrX 11719870 11719892 chrX 11719950 11719972 5 80 1.0 1.0 1.0 2.5 102 chrX 11719870 3` UTR prtp + chrX 11719921 intergenic prtp +,Tango10 + chrX 11719972 intergenic prtp +,Tango10 + chrX_5_11715001 chrX_11715001 RAL-859 1708 chrX 11922367 11922378 chrX 11922500 11922511 4 133 2.0 2.5 2.2 1.2 144 chrX 11922367 exon Sclp - chrX 11922439 intron Sclp - chrX 11922511 intron Sclp - chrX_4_11920001 chrX_11920001 RAL-859 1709 chrX 11936575 11936585 chrX 11936674 11936682 5 99 0.0 2.5 1.2 2.3 107 chrX 11936575 intron cac - chrX 11936628 intron cac - chrX 11936682 intron cac - chrX_5_11935001 chrX_11935001 RAL-859 1710 chrX 12094034 12094059 chrX 12094125 12094150 7 92 4.0 0.5 2.2 2.2 116 chrX 12094034 intron,intron CR43960 +,Ten-a + chrX 12094092 intron,intron CR43960 +,Ten-a + chrX 12094150 intron,intron CR43960 +,Ten-a + chrX_7_12090001 chrX_12090001 RAL-859 1711 chrX 12301958 12301987 chrX 12303263 12303292 X-element 4 1306 3.5 2.5 3.0 1.0 1334 chrX 12301958 intron Ten-a + chrX 12302625 intron Ten-a + chrX 12303292 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-859 1712 chrX 12350776 12350805 chrX 12350857 12350886 5 81 2.0 0.0 1.0 2.5 110 chrX 12350776 intergenic not near genes chrX 12350831 intergenic not near genes chrX 12350886 intergenic not near genes chrX_5_12350001 chrX_12350001 RAL-859 1713 chrX 12392799 12392829 chrX 12392880 12392910 7 81 2.5 2.0 2.2 2.2 111 chrX 12392799 intergenic not near genes chrX 12392854 intergenic not near genes chrX 12392910 intergenic not near genes chrX_7_12390001 chrX_12390001 RAL-859 1714 chrX 12422643 12422654 chrX 12422985 12422996 5 341 1.5 0.5 1.0 2.5 353 chrX 12422643 intergenic not near genes chrX 12422820 intergenic not near genes chrX 12422996 intergenic not near genes chrX_5_12420001 chrX_12420001 RAL-859 1715 chrX 12859054 12859083 chrX 12859132 12859161 8 78 1.0 3.5 2.2 2.5 107 chrX 12859054 intron Pde9 - chrX 12859108 intron Pde9 - chrX 12859161 intron Pde9 - chrX_8_12855001 chrX_12855001 RAL-859 1716 chrX 12917887 12917911 chrX 12917980 12918004 5 93 3.0 0.0 1.5 2.0 117 chrX 12917887 intron fne + chrX 12917946 intron fne + chrX 12918004 intron fne + chrX_5_12915001 chrX_12915001 RAL-859 1717 chrX 12930597 12930605 chrX 12937713 12937721 HMS-Beagle 5 7115 1.5 5.5 3.5 1.1 7124 chrX 12930597 intron fne + chrX 12934159 intron fne + chrX 12937721 intron fne + chrX_5_12930001 chrX_12930001 RAL-859 1718 chrX 13085105 13085120 chrX 13085184 13085200 5 80 2.5 1.5 2.0 1.7 95 chrX 13085105 intron hep - chrX 13085152 intron hep - chrX 13085200 intron hep - chrX_5_13085001 chrX_13085001 RAL-859 1719 chrX 13161704 13161721 chrX 13161781 13161798 5 77 1.0 5.0 3.0 1.2 94 chrX 13161704 3` UTR CG12096 + chrX 13161751 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161798 3` UTR,3` UTR CG12096 +,CG34411 - chrX_5_13160001 chrX_13160001 RAL-859 1720 chrX 13369669 13369703 chrX 13369833 13369867 6 162 1.5 1.5 1.5 2.4 198 chrX 13369669 intron dmrt11E + chrX 13369768 intron dmrt11E + chrX 13369867 intron dmrt11E + chrX_6_13365001 chrX_13365001 RAL-859 1721 chrX 13403024 13403040 chrX 13403151 13403167 X-element 5 127 3.0 3.0 3.0 1.2 143 chrX 13403024 intergenic CG12725 - chrX 13403096 intergenic CG12725 - chrX 13403167 intergenic CG12725 - chrX_5_13400001 chrX_13400001 RAL-859 1722 chrX 13429469 13429496 chrX 13430617 13430645 jockey 5 1149 0.0 2.0 1.0 2.5 1176 chrX 13429469 intergenic not near genes chrX 13430057 intergenic not near genes chrX 13430645 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-859 1723 chrX 13442141 13442163 chrX 13442232 13442254 4 91 1.5 0.5 1.0 2.0 113 chrX 13442141 intergenic not near genes chrX 13442198 intergenic not near genes chrX 13442254 intergenic not near genes chrX_4_13440001 chrX_13440001 RAL-859 1724 chrX 13463646 13463673 chrX 13469223 13469249 mdg3 5 5577 2.5 0.0 1.2 2.3 5603 chrX 13463646 intron Neto + chrX 13466448 intron Neto + chrX 13469249 intron Neto + chrX_5_13465001 chrX_13465001 RAL-859 1725 chrX 13563420 13563441 chrX 13563500 13563521 5 80 0.5 0.5 0.5 3.3 101 chrX 13563420 intergenic CG32633 +,Tango13 + chrX 13563470 intergenic CG32633 +,Tango13 + chrX 13563521 intergenic CG32633 +,Tango13 + chrX_5_13560001 chrX_13560001 RAL-859 1726 chrX 13632169 13632186 chrX 13632439 13632455 4 270 2.0 1.5 1.8 1.4 286 chrX 13632169 intron NFAT + chrX 13632312 intron NFAT + chrX 13632455 intron NFAT + chrX_4_13630001 chrX_13630001 RAL-859 1727 chrX 13789082 13789096 chrX 13789176 13789190 5 93 1.5 3.5 2.5 1.4 108 chrX 13789082 intron inaE + chrX 13789136 intron inaE + chrX 13789190 intron inaE + chrX_5_13785001 chrX_13785001 RAL-859 1728 chrX 13935515 13935526 chrX 13935598 13935609 6 83 4.0 4.5 4.2 1.2 94 chrX 13935515 intron mamo - chrX 13935562 intron mamo - chrX 13935609 intron mamo - chrX_6_13935001 chrX_13935001 RAL-859 1729 chrX 14105020 14105048 chrX 14114171 14114199 roo 7 9151 1.0 2.5 1.8 2.5 9179 chrX 14105020 intergenic not near genes chrX 14109610 intergenic not near genes chrX 14114199 5` UTR CR44657 + chrX_7_14105001 chrX_14105001 RAL-859 1730 chrX 14484974 14484996 chrX 14485063 14485084 4 89 0.0 1.0 0.5 2.7 110 chrX 14484974 intergenic not near genes chrX 14485029 intergenic not near genes chrX 14485084 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-859 1731 chrX 14527857 14527875 chrX 14527952 14527970 4 94 1.0 1.5 1.2 1.8 113 chrX 14527857 intergenic not near genes chrX 14527914 intergenic not near genes chrX 14527970 intergenic not near genes chrX_4_14525001 chrX_14525001 RAL-859 1732 chrX 14560271 14560298 chrX 14560355 14560382 7 84 4.0 2.5 3.2 1.7 111 chrX 14560271 intergenic not near genes chrX 14560326 intergenic not near genes chrX 14560382 intergenic not near genes chrX_7_14560001 chrX_14560001 RAL-859 1733 chrX 14636463 14636490 chrX 14641900 14641931 I-element 6 5440 0.5 0.5 0.5 4.0 5468 chrX 14636463 intron NetA - chrX 14639197 intron NetA - chrX 14641931 intron NetA - chrX_6_14635001 chrX_14635001 RAL-859 1734 chrX 14813739 14813767 chrX 14813817 14813845 10 78 1.0 2.0 1.5 4.0 106 chrX 14813739 intron rut - chrX 14813792 intron rut - chrX 14813845 intron rut - chrX_10_14810001 chrX_14810001 RAL-859 1735 chrX 14818763 14818794 chrX 14823967 14823998 copia 5 5203 1.0 2.5 1.8 1.8 5235 chrX 14818763 intron rut - chrX 14821380 intron rut - chrX 14823998 intron rut - chrX_5_14820001 chrX_14820001 RAL-859 1736 chrX 14936859 14936891 chrX 14946116 14946148 roo 6 9257 3.0 0.0 1.5 2.4 9289 chrX 14936859 intron pdgy - chrX 14941504 intron pdgy - chrX 14946148 intron pdgy - chrX_6_14940001 chrX_14940001 RAL-859 1737 chrX 15110615 15110648 chrX 15110695 15110728 11 80 2.0 0.0 1.0 5.5 113 chrX 15110615 exon Rab3-GEF + chrX 15110672 intron Rab3-GEF + chrX 15110728 intron Rab3-GEF + chrX_11_15110001 chrX_15110001 RAL-859 1738 chrX 15202067 15202086 chrX 15202173 15202191 4 106 2.0 1.5 1.8 1.4 124 chrX 15202067 intergenic not near genes chrX 15202129 intergenic not near genes chrX 15202191 intergenic not near genes chrX_4_15200001 chrX_15200001 RAL-859 1739 chrX 15248268 15248293 chrX 15248344 15248369 5 76 1.0 1.0 1.0 2.5 101 chrX 15248268 intergenic not near genes chrX 15248318 intergenic not near genes chrX 15248369 intergenic not near genes chrX_5_15245001 chrX_15245001 RAL-859 1740 chrX 15273729 15273738 chrX 15274896 15274905 1360 6 1167 2.0 4.5 3.2 1.4 1176 chrX 15273729 intergenic not near genes chrX 15274317 intergenic not near genes chrX 15274905 intergenic not near genes chrX_6_15270001 chrX_15270001 RAL-859 1741 chrX 15277639 15277669 chrX 15277724 15277753 5 85 0.5 1.5 1.0 2.5 114 chrX 15277639 intergenic not near genes chrX 15277696 intergenic not near genes chrX 15277753 intergenic not near genes chrX_5_15275001 chrX_15275001 RAL-859 1742 chrX 15413056 15413087 chrX 15417358 15417388 Juan 9 4302 0.5 0.0 0.2 7.5 4332 chrX 15413056 intron Cngl - chrX 15415222 intron Cngl - chrX 15417388 intron Cngl - chrX_9_15415001 chrX_15415001 RAL-859 1743 chrX 15519800 15519829 chrX 15519878 15519907 8 78 1.0 1.5 1.2 3.6 107 chrX 15519800 intron Ac13E - chrX 15519854 intron Ac13E - chrX 15519907 intron Ac13E - chrX_8_15515001 chrX_15515001 RAL-859 1744 chrX 15666215 15666229 chrX 15666289 15666306 4 76 4.0 2.5 3.2 1.0 91 chrX 15666215 intergenic not near genes chrX 15666260 intergenic not near genes chrX 15666306 intergenic not near genes chrX_4_15665001 chrX_15665001 RAL-859 1745 chrX 15678045 15678068 chrX 15678122 15678145 4 77 1.0 4.0 2.5 1.1 100 chrX 15678045 intergenic CG12708 + chrX 15678095 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_4_15675001 chrX_15675001 RAL-859 1746 chrX 15749659 15749674 chrX 15749762 15749777 5 103 1.5 3.0 2.2 1.6 118 chrX 15749659 intron CG8239 + chrX 15749718 intron CG8239 + chrX 15749777 intron CG8239 + chrX_5_15745001 chrX_15745001 RAL-859 1747 chrX 16282006 16282039 chrX 16282082 16282115 8 76 0.0 1.5 0.8 4.4 109 chrX 16282006 intron eas + chrX 16282060 intron eas + chrX 16282115 intron eas + chrX_8_16280001 chrX_16280001 RAL-859 1748 chrX 16308933 16308941 chrX 16309015 16309023 4 82 0.0 4.0 2.0 1.3 90 chrX 16308933 intergenic CR45485 +,CG9914 - chrX 16308978 intergenic CR45485 +,CG9914 - chrX 16309023 intergenic CR45485 +,CG9914 - chrX_4_16305001 chrX_16305001 RAL-859 1749 chrX 16407185 16407213 chrX 16407262 16407290 4 77 0.0 1.5 0.8 2.2 105 chrX 16407185 intron CG4301 + chrX 16407238 intron CG4301 + chrX 16407290 intron CG4301 + chrX_4_16405001 chrX_16405001 RAL-859 1750 chrX 16492644 16492678 chrX 16498221 16498255 mdg3 6 5577 1.5 2.5 2.0 2.0 5611 chrX 16492644 intron para - chrX 16495450 intron para - chrX 16498255 intron para - chrX_6_16495001 chrX_16495001 RAL-859 1751 chrX 16513903 16513932 chrX 16514000 16514029 14 97 5.5 2.5 4.0 2.8 126 chrX 16513903 exon para - chrX 16513966 intron para - chrX 16514029 exon para - chrX_14_16510001 chrX_16510001 RAL-859 1752 chrX 16623481 16623496 chrX 16623567 16623581 4 86 3.5 0.0 1.8 1.4 100 chrX 16623481 intergenic not near genes chrX 16623531 intergenic Rok - chrX 16623581 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-859 1753 chrX 16650935 16650957 chrX 16651012 16651034 4 77 1.0 0.5 0.8 2.2 99 chrX 16650935 intergenic CG32573 +,CG42512 + chrX 16650984 intergenic CG32573 +,CG42512 + chrX 16651034 intergenic CG32573 +,CG42512 + chrX_4_16650001 chrX_16650001 RAL-859 1754 chrX 16689621 16689645 chrX 16689707 16689727 5 84 1.5 0.0 0.8 2.8 106 chrX 16689621 intron Sep4 - chrX 16689674 intron Sep4 - chrX 16689727 intron Sep4 - chrX_5_16685001 chrX_16685001 RAL-859 1755 chrX 16785275 16785307 chrX 16785379 16785411 5 104 0.5 2.5 1.5 2.0 136 chrX 16785275 3` UTR CG9609 - chrX 16785343 3` UTR CG9609 - chrX 16785411 3` UTR CG9609 - chrX_5_16785001 chrX_16785001 RAL-859 1756 chrX 16841408 16841422 chrX 16841485 16841500 4 78 2.5 1.5 2.0 1.3 92 chrX 16841408 exon RSG7 - chrX 16841454 intron RSG7 - chrX 16841500 intron RSG7 - chrX_4_16840001 chrX_16840001 RAL-859 1757 chrX 17011975 17011995 chrX 17012057 17012078 8 83 4.0 1.5 2.8 2.1 103 chrX 17011975 intron CG45002 - chrX 17012026 intron CG45002 - chrX 17012078 intron CG45002 - chrX_8_17010001 chrX_17010001 RAL-859 1758 chrX 17061566 17061598 chrX 17061689 17061721 6 123 1.0 1.0 1.0 3.0 155 chrX 17061566 intron CG45002 - chrX 17061644 intron CG45002 - chrX 17061721 intron CG45002 - chrX_6_17060001 chrX_17060001 RAL-859 1759 chrX 17316366 17316389 chrX 17316450 17316473 5 84 0.5 0.0 0.2 4.2 107 chrX 17316366 intron B-H2 + chrX 17316420 intron B-H2 + chrX 17316473 intron B-H2 + chrX_5_17315001 chrX_17315001 RAL-859 1760 chrX 17352591 17352621 chrX 17352694 17352724 6 103 0.0 2.5 1.2 2.7 133 chrX 17352591 intergenic not near genes chrX 17352658 intergenic not near genes chrX 17352724 intergenic not near genes chrX_6_17350001 chrX_17350001 RAL-859 1761 chrX 17457580 17457605 chrX 17457663 17457686 8 83 1.5 3.0 2.2 2.5 106 chrX 17457580 3` UTR CG43658 - chrX 17457633 3` UTR CG43658 - chrX 17457686 3` UTR CG43658 - chrX_8_17455001 chrX_17455001 RAL-859 1762 chrX 17556942 17556959 chrX 17557441 17557458 mdg1 5 499 3.0 2.0 2.5 1.4 516 chrX 17556942 intron CG43658 - chrX 17557200 intron CG43658 - chrX 17557458 intron CG43658 - chrX_5_17555001 chrX_17555001 RAL-859 1763 chrX 17766361 17766369 chrX 17766456 17766467 5 97 4.5 2.5 3.5 1.1 106 chrX 17766361 intergenic not near genes chrX 17766414 intergenic not near genes chrX 17766467 intergenic not near genes chrX_5_17765001 chrX_17765001 RAL-859 1764 chrX 17792780 17792814 chrX 17796381 17796414 flea 9 3601 0.5 1.0 0.8 5.0 3634 chrX 17792780 intron OdsH + chrX 17794597 intron OdsH + chrX 17796414 intron OdsH + chrX_9_17790001 chrX_17790001 RAL-859 1765 chrX 18003454 18003485 chrX 18003536 18003567 11 82 1.0 1.0 1.0 5.5 113 chrX 18003454 intron Sh - chrX 18003510 intron Sh - chrX 18003567 intron Sh - chrX_11_18000001 chrX_18000001 RAL-859 1766 chrX 18020820 18020835 chrX 18020907 18020921 4 87 4.5 3.0 3.8 0.8 101 chrX 18020820 intron Sh - chrX 18020870 intron Sh - chrX 18020921 intron Sh - chrX_4_18020001 chrX_18020001 RAL-859 1767 chrX 18040432 18040461 chrX 18040520 18040549 5 88 0.5 1.0 0.8 2.8 117 chrX 18040432 intron Sh - chrX 18040490 intron Sh - chrX 18040549 intron Sh - chrX_5_18040001 chrX_18040001 RAL-859 1768 chrX 18126602 18126830 chrX 18126724 18126907 9 107 2.0 3.0 2.5 2.6 305 chrX 18126602 intron CG32553 - chrX 18126754 intron CG32553 - chrX 18126907 intron CG32553 - chrX_9_18125001 chrX_18125001 RAL-859 1769 chrX 18194075 18194100 chrX 18194610 18194635 BS 8 535 1.5 5.0 3.2 1.9 560 chrX 18194075 intron Frq2 + chrX 18194355 intron Frq2 + chrX 18194635 intron Frq2 + chrX_8_18190001 chrX_18190001 RAL-859 1770 chrX 18429492 18429522 chrX 18434803 18434833 Transpac 6 5311 4.0 1.0 2.5 1.7 5341 chrX 18429492 intergenic not near genes chrX 18432162 intergenic not near genes chrX 18434833 intergenic not near genes chrX_6_18430001 chrX_18430001 RAL-859 1771 chrX 18467230 18467257 chrX 18467394 18467420 7 164 1.5 1.0 1.2 3.2 190 chrX 18467230 intron CG32547 - chrX 18467325 intron CG32547 - chrX 18467420 intron CG32547 - chrX_7_18465001 chrX_18465001 RAL-859 1772 chrX 18486112 18486136 chrX 18486201 18486225 8 89 0.5 2.0 1.2 3.6 113 chrX 18486112 exon psh - chrX 18486168 intron psh - chrX 18486225 intron psh - chrX_8_18485001 chrX_18485001 RAL-859 1773 chrX 18543108 18543114 chrX 18543191 18543197 4 83 4.0 2.0 3.0 1.0 89 chrX 18543108 intron Bx + chrX 18543152 intron Bx + chrX 18543197 intron Bx + chrX_4_18540001 chrX_18540001 RAL-859 1774 chrX 18558776 18558791 chrX 18558858 18558873 4 82 0.0 2.0 1.0 2.0 97 chrX 18558776 intron Bx + chrX 18558824 intron Bx + chrX 18558873 intron Bx + chrX_4_18555001 chrX_18555001 RAL-859 1775 chrX 18896524 18896543 chrX 18896633 18896654 6 110 1.5 2.0 1.8 2.1 130 chrX 18896524 3` UTR CG7349 + chrX 18896589 intergenic CG7349 + chrX 18896654 intergenic CG7349 + chrX_6_18895001 chrX_18895001 RAL-859 1776 chrX 18957076 18957099 chrX 18965738 18965762 roo 5 8663 0.5 0.5 0.5 3.3 8686 chrX 18957076 intron CG43759 + chrX 18961419 intron CG43759 + chrX 18965762 intron CG43759 + chrX_5_18960001 chrX_18960001 RAL-859 1777 chrX 19060417 19060430 chrX 19065201 19065214 Doc 4 4784 2.5 2.5 2.5 1.1 4797 chrX 19060417 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065214 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-859 1778 chrX 19071249 19071285 chrX 19071326 19071362 7 77 3.5 2.0 2.8 1.8 113 chrX 19071249 intergenic not near genes chrX 19071306 intergenic not near genes chrX 19071362 intergenic not near genes chrX_7_19070001 chrX_19070001 RAL-859 1779 chrX 19106831 19106842 chrX 19106904 19106917 5 75 3.0 2.0 2.5 1.4 86 chrX 19106831 intergenic not near genes chrX 19106874 intergenic not near genes chrX 19106917 intergenic not near genes chrX_5_19105001 chrX_19105001 RAL-859 1780 chrX 19136558 19136579 chrX 19143478 19143496 412 4 6919 1.5 3.0 2.2 1.2 6938 chrX 19136558 intergenic not near genes chrX 19140027 intergenic not near genes chrX 19143496 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-859 1781 chrX 19185558 19185566 chrX 19185654 19185662 5 96 0.0 4.5 2.2 1.6 104 chrX 19185558 intron CG33253 + chrX 19185610 intron CG33253 + chrX 19185662 intron CG33253 + chrX_5_19185001 chrX_19185001 RAL-859 1782 chrX 13057298 13057300 chrX 19242812 19242814 14 6185514 7.0 5.0 6.0 2.0 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_14_16150001 chrX_16150001 RAL-859 1783 chrX 19356994 19357014 chrX 19358434 19358454 NOF 6 1441 1.0 1.0 1.0 3.0 1460 chrX 19356994 intron kek5 + chrX 19357724 intron kek5 + chrX 19358454 intron kek5 + chrX_6_19355001 chrX_19355001 RAL-859 1784 chrX 19380155 19380188 chrX 19380396 19380429 pogo 9 241 0.5 1.0 0.8 5.0 274 chrX 19380155 intron kek5 + chrX 19380292 intron kek5 + chrX 19380429 intron kek5 + chrX_9_19380001 chrX_19380001 RAL-859 1785 chrX 19472119 19472153 chrX 19472689 19472719 jockey 4 569 0.5 2.0 1.2 1.8 600 chrX 19472119 intergenic kek5 + chrX 19472419 intergenic not near genes chrX 19472719 intergenic not near genes chrX_4_19470001 chrX_19470001 RAL-859 1786 chrX 19710073 19710099 chrX 19711859 19711885 S-element 8 1786 2.0 3.5 2.8 2.1 1812 chrX 19710073 intron meso18E - chrX 19710979 intron meso18E - chrX 19711885 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-859 1787 chrX 19784803 19784831 chrX 19784883 19784911 7 79 1.5 2.5 2.0 2.3 108 chrX 19784803 intergenic not near genes chrX 19784857 intergenic not near genes chrX 19784911 intergenic not near genes chrX_7_19780001 chrX_19780001 RAL-859 1788 chrX 19822827 19822852 chrX 19822994 19823018 11 167 6.0 3.0 4.5 2.0 191 chrX 19822827 intergenic not near genes chrX 19822922 intergenic skpE - chrX 19823018 intergenic skpE - chrX_11_19820001 chrX_19820001 RAL-859 1789 chrX 19827354 19827380 chrX 19827432 19827458 4 78 0.0 1.0 0.5 2.7 104 chrX 19827354 intergenic not near genes chrX 19827406 intergenic not near genes chrX 19827458 intergenic not near genes chrX_4_19825001 chrX_19825001 RAL-859 1790 chrX 19881457 19881476 chrX 19881538 19881557 5 81 1.5 1.0 1.2 2.3 100 chrX 19881457 intron Hers + chrX 19881507 intron Hers + chrX 19881557 intron Hers + chrX_5_19880001 chrX_19880001 RAL-859 1791 chrX 19884102 19884120 chrX 19884178 19884192 4 75 2.0 1.5 1.8 1.4 90 chrX 19884102 intron Hers + chrX 19884147 intron Hers + chrX 19884192 intron Hers + chrX_4_19880001 chrX_19880001 RAL-859 1792 chrX 19897382 19897408 chrX 19897459 19897485 4 77 0.5 2.5 1.5 1.6 103 chrX 19897382 intron Hers + chrX 19897434 intron Hers + chrX 19897485 intron Hers + chrX_4_19895001 chrX_19895001 RAL-859 1793 chrX 19983862 19983880 chrX 19983942 19983960 4 80 2.0 0.5 1.2 1.8 98 chrX 19983862 intergenic not near genes chrX 19983911 intergenic not near genes chrX 19983960 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-859 1794 chrX 20041533 20041559 chrX 20041613 20041639 4 80 0.0 1.0 0.5 2.7 106 chrX 20041533 intron Dop2R - chrX 20041586 intron Dop2R - chrX 20041639 intron Dop2R - chrX_4_20040001 chrX_20040001 RAL-859 1795 chrX 20046638 20046659 chrX 20046720 20046741 8 82 5.0 4.0 4.5 1.5 103 chrX 20046638 intron Dop2R - chrX 20046690 intron Dop2R - chrX 20046741 intron Dop2R - chrX_8_20045001 chrX_20045001 RAL-859 1796 chrX 20052787 20052813 chrX 20052871 20052897 8 84 1.0 0.0 0.5 5.3 110 chrX 20052787 intron Dop2R - chrX 20052842 intron Dop2R - chrX 20052897 intron Dop2R - chrX_8_20050001 chrX_20050001 RAL-859 1797 chrX 20069267 20069295 chrX 20069400 20069428 4 133 0.5 3.0 1.8 1.4 161 chrX 20069267 intergenic not near genes chrX 20069348 intergenic not near genes chrX 20069428 intergenic not near genes chrX_4_20065001 chrX_20065001 RAL-859 1798 chrX 20082751 20082776 chrX 20082834 20082859 9 83 3.0 1.5 2.2 2.8 108 chrX 20082751 intergenic not near genes chrX 20082805 intergenic not near genes chrX 20082859 intergenic not near genes chrX_9_20080001 chrX_20080001 RAL-859 1799 chrX 20126896 20126909 chrX 20126975 20126988 5 79 2.0 1.0 1.5 2.0 92 chrX 20126896 intergenic not near genes chrX 20126942 intergenic not near genes chrX 20126988 intergenic not near genes chrX_5_20125001 chrX_20125001 RAL-859 1800 chrX 20271506 20271528 chrX 20271598 20271620 6 92 2.0 0.0 1.0 3.0 114 chrX 20271506 intergenic not near genes chrX 20271563 intergenic not near genes chrX 20271620 intergenic not near genes chrX_6_20270001 chrX_20270001 RAL-859 1801 chrX 20312882 20312910 chrX 20312958 20312987 6 78 2.5 1.5 2.0 2.0 105 chrX 20312882 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20312987 intron CG1504 - chrX_6_20310001 chrX_20310001 RAL-859 1802 chrX 20377326 20377349 chrX 20378792 20378815 hobo 6 1466 3.0 2.5 2.8 1.6 1489 chrX 20377326 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378815 intergenic not near genes chrX_6_20375001 chrX_20375001 RAL-859 1803 chrX 20387283 20387297 chrX 20387381 20387393 4 96 1.5 3.0 2.2 1.2 110 chrX 20387283 intergenic not near genes chrX 20387338 intergenic not near genes chrX 20387393 intergenic not near genes chrX_4_20385001 chrX_20385001 RAL-859 1804 chrX 20447120 20447139 chrX 20447201 20447219 4 80 3.5 2.5 3.0 1.0 99 chrX 20447120 intergenic CG42578 + chrX 20447170 intergenic CG42578 + chrX 20447219 intergenic not near genes chrX_4_20445001 chrX_20445001 RAL-859 1805 chrX 20504128 20504153 chrX 20505645 20505673 transib2 5 1520 3.0 1.5 2.2 1.6 1545 chrX 20504128 intron RhoGAP19D - chrX 20504900 intron RhoGAP19D - chrX 20505673 intron RhoGAP19D - chrX_5_20500001 chrX_20500001 RAL-859 1806 chrX 20516994 20517002 chrX 20517090 20517108 6 103 2.5 3.5 3.0 1.5 114 chrX 20516994 exon Tak1 - chrX 20517051 exon Tak1 - chrX 20517108 exon Tak1 - chrX_6_20515001 chrX_20515001 RAL-859 1807 chrX 20528602 20528631 chrX 20528950 20528979 9 348 1.5 0.0 0.8 5.0 377 chrX 20528602 intergenic not near genes chrX 20528790 intergenic not near genes chrX 20528979 intergenic not near genes chrX_9_20525001 chrX_20525001 RAL-859 1808 chrX 20710417 20710431 chrX 20710494 20710508 6 76 0.0 2.0 1.0 3.0 91 chrX 20710417 intergenic not near genes chrX 20710462 intergenic not near genes chrX 20710508 intergenic not near genes chrX_6_20710001 chrX_20710001 RAL-859 1809 chrX 20874816 20874827 chrX 20874903 20874914 4 87 3.0 2.0 2.5 1.1 98 chrX 20874816 intron shakB - chrX 20874865 intron shakB - chrX 20874914 intron shakB - chrX_4_20870001 chrX_20870001 RAL-859 1810 chrX 20940725 20940745 chrX 20942194 20942213 hobo 8 1469 4.0 1.5 2.8 2.1 1488 chrX 20940725 intergenic not near genes chrX 20941469 intergenic not near genes chrX 20942213 intergenic not near genes chrX_8_20940001 chrX_20940001 RAL-859 1811 chrX 21042555 21042591 chrX 21045340 21045376 9 2785 20.0 21.0 20.5 0.4 2821 chrX 21042555 exon Mgstl + chrX 21043966 exon,3` UTR Mgstl +,CR44431 - chrX 21045376 intron Cbs + chrX_9_21040001 chrX_21040001 RAL-859 1812 chrX 21076343 21076356 chrX 21076422 21076435 4 79 0.0 0.5 0.2 3.3 92 chrX 21076343 intron bves + chrX 21076389 intron bves + chrX 21076435 intron bves + chrX_4_21075001 chrX_21075001 RAL-859 1813 chrX 21086130 21086166 chrX 21087158 21087195 jockey 9 1029 1.0 3.5 2.2 2.8 1065 chrX 21086130 intergenic not near genes chrX 21086662 intergenic not near genes chrX 21087195 intergenic not near genes chrX_9_21085001 chrX_21085001 RAL-859 1814 chrX 21089150 21089172 chrX 21089244 21089266 6 94 1.0 1.5 1.2 2.7 116 chrX 21089150 intergenic not near genes chrX 21089208 intergenic not near genes chrX 21089266 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-859 1815 chrX 21092652 21092685 chrX 21092730 21092763 7 77 5.5 1.5 3.5 1.6 111 chrX 21092652 intergenic not near genes chrX 21092708 intergenic not near genes chrX 21092763 intergenic not near genes chrX_7_21090001 chrX_21090001 RAL-859 1816 chrX 21253286 21253303 chrX 21253363 21253379 6 77 3.0 3.0 3.0 1.5 93 chrX 21253286 intron CG32521 - chrX 21253332 intron CG32521 - chrX 21253379 intron CG32521 - chrX_6_21250001 chrX_21250001 RAL-859 1817 chrX 21328122 21328142 chrX 21328233 21328253 6 111 1.0 0.5 0.8 3.3 131 chrX 21328122 3` UTR CG1486 + chrX 21328188 intergenic CG1486 +,tty - chrX 21328253 intergenic CG1486 +,tty - chrX_6_21325001 chrX_21325001 RAL-859 1818 chrX 21458699 21458714 chrX 21464133 21464150 Ivk 5 5436 4.0 3.5 3.8 1.0 5451 chrX 21458699 intergenic not near genes chrX 21461424 intergenic not near genes chrX 21464150 intergenic not near genes chrX_5_21460001 chrX_21460001 RAL-859 1819 chrX 21668258 21668282 chrX 21668343 21668367 6 85 12.5 9.5 11.0 0.5 109 chrX 21668258 intergenic not near genes chrX 21668312 intergenic not near genes chrX 21668367 intergenic not near genes chrX_6_21665001 chrX_21665001 RAL-859 1820 chrX 22584338 22584363 chrX 22584429 22584454 7 91 2.0 0.5 1.2 3.2 116 chrX 22584338 intron Cda4 - chrX 22584396 intron Cda4 - chrX 22584454 intron Cda4 - chrX_7_22580001 chrX_22580001 RAL-859 1821 chrX 22585504 22585526 chrX 22585587 22585609 4 83 2.0 2.5 2.2 1.2 105 chrX 22585504 intron Cda4 - chrX 22585556 intron Cda4 - chrX 22585609 intron Cda4 - chrX_4_22585001 chrX_22585001 RAL-859 1822 chrX 22620505 22620518 chrX 22626773 22626786 297 4 6268 2.5 1.0 1.8 1.4 6281 chrX 22620505 intron Cda4 - chrX 22623646 intron Cda4 - chrX 22626786 intron Cda4 - chrX_4_22620001 chrX_22620001 RAL-859 1823 chrX 22697500 22697520 chrX 22701797 22701817 Juan 4 4297 2.0 2.0 2.0 1.3 4317 chrX 22697500 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701817 intron CR44997 + chrX_4_22695001 chrX_22695001 RAL-859 1824 chrX 22771506 22771536 chrX 22774797 22774827 297 4 3291 2.5 0.5 1.5 1.6 3321 chrX 22771506 intron CR44997 + chrX 22773166 intron CR44997 + chrX 22774827 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-859 1825 chrX 22824228 22824441 chrX 22824354 22824574 6 130 1.0 0.5 0.8 3.3 346 chrX 22824228 intergenic fog - chrX 22824401 3` UTR fog - chrX 22824574 3` UTR fog - chrX_6_22820001 chrX_22820001 RAL-859 1826 chrX 22992392 22992430 chrX 22992523 22992561 9 131 2.0 0.0 1.0 4.5 169 chrX 22992392 intron,intron stnA -,stnB - chrX 22992476 intron,intron stnA -,stnB - chrX 22992561 intron,intron stnA -,stnB - chrX_9_22990001 chrX_22990001 RAL-859 1827 chrX 22892368 22892374 chrX 23039012 23039018 5 146644 2.5 5.5 4.0 1.0 146650 chrX 22892368 intergenic not near genes chrX 22965693 intergenic not near genes chrX 23039018 intron CG12061 + chrX_5_22965001 chrX_22965001 RAL-859 1828 chrY 975794 975817 chrY 975874 975894 8 104 101.0 105.5 103.2 0.1 100 chrY 975794 intergenic not near genes chrY 975844 intergenic not near genes chrY 975894 intergenic not near genes chrY_8_975001 chrY_975001 RAL-859 1829 chrY 1419912 1419923 chrY 1420165 1420177 4 254 6.0 3.5 4.8 0.7 265 chrY 1419912 intergenic not near genes chrY 1420044 intergenic not near genes chrY 1420177 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-859