SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47462	47485	chr2L	52564	52590	jockey	7	5104	4.5	1.5	3.0	1.8	5128	chr2L	47462	intron	Cda5 -	chr2L	50026	intron	Cda5 -	chr2L	52590	intron	Cda5 -	chr2L_7_50001	chr2L_50001	RAL-852
7	chr2L	686922	686950	chr2L	695962	695990	roo	4	9040	0.5	1.5	1.0	2.0	9068	chr2L	686922	intron	ds -	chr2L	691456	intron	ds -	chr2L	695990	intron	ds -	chr2L_4_690001	chr2L_690001	RAL-852
10	chr2L	976880	976913	chr2L	984516	984549	roo	6	7636	0.0	2.5	1.2	2.7	7669	chr2L	976880	intergenic	not near genes	chr2L	980714	intergenic	not near genes	chr2L	984549	intergenic	not near genes	chr2L_6_980001	chr2L_980001	RAL-852
25	chr2L	4066040	4066062	chr2L	4068864	4068887	Juan	4	2824	1.0	0.5	0.8	2.2	2847	chr2L	4066040	intron	ed +	chr2L	4067464	intron	ed +	chr2L	4068887	intron	ed +	chr2L_4_4065001	chr2L_4065001	RAL-852
29	chr2L	4181295	4181302	chr2L	4183927	4183930	Burdock	5	2630	3.5	5.0	4.2	1.0	2635	chr2L	4181295	intergenic	not near genes	chr2L	4182612	intergenic	not near genes	chr2L	4183930	intergenic	not near genes	chr2L_5_4180001	chr2L_4180001	RAL-852
32	chr2L	4601702	4601733	chr2L	4609143	4609174	mdg1	7	7441	2.0	3.5	2.8	1.8	7472	chr2L	4601702	intron	dp -	chr2L	4605438	intron	dp -	chr2L	4609174	intron	dp -	chr2L_7_4605001	chr2L_4605001	RAL-852
46	chr2L	6363149	6363169	chr2L	6366071	6366091	Burdock	4	2921	2.5	0.0	1.2	1.8	2942	chr2L	6363149	intergenic	not near genes	chr2L	6364620	intergenic	not near genes	chr2L	6366091	intergenic	not near genes	chr2L_4_6360001	chr2L_6360001	RAL-852
57	chr2L	8452424	8452451	chr2L	8461595	8461622	roo	6	9171	1.0	1.5	1.2	2.7	9198	chr2L	8452424	intron	fu12 -	chr2L	8457023	intron	fu12 -	chr2L	8461622	intron	fu12 -	chr2L_6_8455001	chr2L_8455001	RAL-852
67	chr2L	9217970	9217993	chr2L	9222757	9222779	Doc	7	4787	1.0	2.0	1.5	2.8	4809	chr2L	9217970	intron	tai +	chr2L	9220374	intron	tai +	chr2L	9222779	intron	tai +	chr2L_7_9220001	chr2L_9220001	RAL-852
77	chr2L	10862840	10862876	chr2L	10864454	10864490	Rt1c	7	1614	0.0	2.5	1.2	3.2	1650	chr2L	10862840	3` UTR	CR43807 -	chr2L	10863665	intron	CR43807 -	chr2L	10864490	3` UTR	CR43807 -	chr2L_7_10860001	chr2L_10860001	RAL-852
79	chr2L	10946949	10946977	chr2L	10956164	10956191	roo	8	9215	2.5	3.0	2.8	2.1	9242	chr2L	10946949	intron	dpr2 -	chr2L	10951570	intron	dpr2 -	chr2L	10956191	intron	dpr2 -	chr2L_8_10950001	chr2L_10950001	RAL-852
80	chr2L	11563636	11563670	chr2L	11568840	11568874	copia	4	5204	1.0	2.0	1.5	1.6	5238	chr2L	11563636	intergenic	not near genes	chr2L	11566255	intergenic	not near genes	chr2L	11568874	intergenic	not near genes	chr2L_4_11565001	chr2L_11565001	RAL-852
82	chr2L	12067329	12067359	chr2L	12074381	12074411	297	5	7052	1.0	0.5	0.8	2.8	7082	chr2L	12067329	intergenic	not near genes	chr2L	12070870	intergenic	not near genes	chr2L	12074411	intergenic	not near genes	chr2L_5_12070001	chr2L_12070001	RAL-852
87	chr2L	12861699	12861728	chr2L	12863166	12863193	hobo	7	1467	0.5	1.0	0.8	3.9	1494	chr2L	12861699	intergenic	not near genes	chr2L	12862446	intergenic	not near genes	chr2L	12863193	intergenic	not near genes	chr2L_7_12860001	chr2L_12860001	RAL-852
88	chr2L	12894025	12894048	chr2L	12895492	12895515	hobo	4	1467	1.0	1.0	1.0	2.0	1490	chr2L	12894025	intergenic	not near genes	chr2L	12894770	intergenic	not near genes	chr2L	12895515	intergenic	not near genes	chr2L_4_12890001	chr2L_12890001	RAL-852
89	chr2L	12933859	12933866	chr2L	12941326	12941331	blood	4	7466	4.5	3.5	4.0	0.8	7472	chr2L	12933859	intergenic	not near genes	chr2L	12937595	intergenic	not near genes	chr2L	12941331	intergenic	not near genes	chr2L_4_12935001	chr2L_12935001	RAL-852
93	chr2L	13405657	13405674	chr2L	13410454	13410471	Doc	8	4797	4.0	1.5	2.8	2.1	4814	chr2L	13405657	exon	CG7110 +	chr2L	13408064	intron	CG7110 +	chr2L	13410471	intron	CG7110 +	chr2L_8_13405001	chr2L_13405001	RAL-852
97	chr2L	13761815	13761830	chr2L	13762925	13762941	Doc	4	1111	1.5	2.0	1.8	1.4	1126	chr2L	13761815	intron	TM9SF4 +	chr2L	13762378	intron	TM9SF4 +	chr2L	13762941	intron	TM9SF4 +	chr2L_4_13760001	chr2L_13760001	RAL-852
98	chr2L	13853098	13853105	chr2L	13862248	13862255	roo	4	9150	2.0	3.0	2.5	1.1	9157	chr2L	13853098	intron	CenG1A +	chr2L	13857676	intron	CenG1A +	chr2L	13862255	intron	CenG1A +	chr2L_4_13855001	chr2L_13855001	RAL-852
107	chr2L	14642580	14642599	chr2L	14651743	14651762	roo	4	9163	1.0	1.0	1.0	2.0	9182	chr2L	14642580	intron	osp -	chr2L	14647171	intron	osp -	chr2L	14651762	intron	osp -	chr2L_4_14645001	chr2L_14645001	RAL-852
108	chr2L	14803878	14803911	chr2L	14809081	14809114	copia	6	5203	0.5	1.0	0.8	3.3	5236	chr2L	14803878	intergenic	not near genes	chr2L	14806496	intergenic	not near genes	chr2L	14809114	intergenic	not near genes	chr2L_6_14805001	chr2L_14805001	RAL-852
112	chr2L	15446056	15446078	chr2L	15453525	15453547	blood	6	7469	2.5	0.0	1.2	2.7	7491	chr2L	15446056	intergenic	not near genes	chr2L	15449802	intergenic	not near genes	chr2L	15453547	intergenic	not near genes	chr2L_6_15445001	chr2L_15445001	RAL-852
117	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	10	145889	11.5	7.0	9.2	1.0	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-852
118	chr2L	16141175	16141195	chr2L	16146382	16146402	copia	4	5206	1.0	1.0	1.0	2.0	5227	chr2L	16141175	intergenic	not near genes	chr2L	16143788	intergenic	not near genes	chr2L	16146402	intergenic	not near genes	chr2L_4_16140001	chr2L_16140001	RAL-852
120	chr2L	16071770	16071771	chr2L	16217660	16217660	copia	8	145889	11.5	7.0	9.2	0.8	145890	chr2L	16071770	intron	beat-Ia +	chr2L	16144715	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	RAL-852
150	chr2L	19652569	19652586	chr2L	19674005	19674022	opus	4	21436	2.0	2.0	2.0	1.3	21453	chr2L	19652569	intron	Lar +	chr2L	19663296	intron	Lar +	chr2L	19674022	intron	Lar +	chr2L_4_19660001	chr2L_19660001	RAL-852
151	chr2L	19703537	19703564	chr2L	19712673	19712693	roo	5	9135	2.0	1.0	1.5	2.0	9156	chr2L	19703537	intron	Lar +	chr2L	19708115	intron	Lar +	chr2L	19712693	intron	Lar +	chr2L_5_19705001	chr2L_19705001	RAL-852
152	chr2L	19737354	19737384	chr2L	19740820	19740853	1360	10	3468	1.0	0.0	0.5	6.7	3499	chr2L	19737354	intergenic	Nf-YB +	chr2L	19739104	intergenic	not near genes	chr2L	19740853	intergenic	not near genes	chr2L_10_19735001	chr2L_19735001	RAL-852
153	chr2L	19762808	19762834	chr2L	19763050	19763076	pogo	4	242	1.0	0.5	0.8	2.2	268	chr2L	19762808	5` UTR	fbp -	chr2L	19762942	intron	fbp -	chr2L	19763076	intron	fbp -	chr2L_4_19760001	chr2L_19760001	RAL-852
160	chr2L	20272115	20272142	chr2L	20282826	20282852	copia	7	10711	2.0	1.5	1.8	2.5	10737	chr2L	20272115	intergenic	not near genes	chr2L	20277484	intergenic	not near genes	chr2L	20282852	intergenic	not near genes	chr2L_7_20275001	chr2L_20275001	RAL-852
161	chr2L	20372241	20372245	chr2L	20372475	20372479	pogo	4	234	1.0	4.0	2.5	1.1	238	chr2L	20372241	intergenic	Ugt37a1 -	chr2L	20372360	intergenic	Ugt37a1 -	chr2L	20372479	exon	Ugt37a1 -	chr2L_4_20370001	chr2L_20370001	RAL-852
163	chr2L	20576221	20576251	chr2L	20583689	20583719	blood	6	7468	1.5	1.0	1.2	2.7	7498	chr2L	20576221	intergenic	not near genes	chr2L	20579970	intergenic	not near genes	chr2L	20583719	3` UTR	CR44909 -	chr2L_6_20575001	chr2L_20575001	RAL-852
169	chr2L	21020276	21020311	chr2L	21023953	21023988	NOF	5	3677	2.0	2.0	2.0	1.7	3712	chr2L	21020276	intron	CG42238 -	chr2L	21022132	intron	CG42238 -	chr2L	21023988	intron	CG42238 -	chr2L_5_21020001	chr2L_21020001	RAL-852
170	chr2L	21041138	21041166	chr2L	21049399	21049427	Tirant	4	8261	0.0	2.5	1.2	1.8	8289	chr2L	21041138	intron	CG42238 -	chr2L	21045282	intron	CG42238 -	chr2L	21049427	intron	CG42238 -	chr2L_4_21045001	chr2L_21045001	RAL-852
175	chr2L	21691829	21691857	chr2L	21698299	21698327	Burdock	6	6470	1.0	0.0	0.5	4.0	6498	chr2L	21691829	intron	CG31619 +	chr2L	21695078	intron	CG31619 +	chr2L	21698327	intron	CG31619 +	chr2L_6_21695001	chr2L_21695001	RAL-852
177	chr2L	21981686	21981708	chr2L	21990851	21990869	roo	4	9164	1.5	1.0	1.2	1.8	9183	chr2L	21981686	exon	CG2528 -	chr2L	21986278	intron	CG2528 -	chr2L	21990869	exon	CG2528 -	chr2L_4_21985001	chr2L_21985001	RAL-852
179	chr2L	22548929	22548944	chr2L	22550154	22550169	1360	4	1225	0.0	4.0	2.0	1.3	1240	chr2L	22548929	intergenic	CG17490 +	chr2L	22549549	intergenic	not near genes	chr2L	22550169	intergenic	CG17493 +	chr2L_4_22545001	chr2L_22545001	RAL-852
181	chr2L	22716448	22716476	chr2L	22717849	22717877	INE-1	4	1401	1.5	0.5	1.0	2.0	1429	chr2L	22716448	intron	CG40006 -	chr2L	22717162	intron	CG40006 -	chr2L	22717877	intron	CG40006 -	chr2L_4_22715001	chr2L_22715001	RAL-852
182	chr2L	22776440	22776448	chr2L	22778229	22778236	S-element	4	1789	0.5	3.5	2.0	1.3	1796	chr2L	22776440	intergenic	not near genes	chr2L	22777338	intergenic	not near genes	chr2L	22778236	intergenic	not near genes	chr2L_4_22775001	chr2L_22775001	RAL-852
183	chr2R	529331	529357	chr2R	537953	537982	Max-element	6	8624	0.5	0.5	0.5	4.0	8651	chr2R	529331	intron	CG40378 +	chr2R	533656	intron	CG40378 +	chr2R	537982	intron	CG40378 +	chr2R_6_530001	chr2R_530001	RAL-852
184	chr2R	552774	552788	chr2R	553992	554006	1360	5	1218	2.5	2.0	2.2	1.6	1232	chr2R	552774	intron	CG40378 +	chr2R	553390	intron	CG40378 +	chr2R	554006	intron	CG40378 +	chr2R_5_550001	chr2R_550001	RAL-852
194	chr2R	5869282	5869308	chr2R	5874357	5874384	flea	4	5076	2.5	3.5	3.0	1.0	5102	chr2R	5869282	intergenic	not near genes	chr2R	5871833	intergenic	not near genes	chr2R	5874384	intergenic	not near genes	chr2R_4_5870001	chr2R_5870001	RAL-852
197	chr2R	5902157	5902185	chr2R	5909716	5909744	17.6	4	7559	2.0	1.0	1.5	1.6	7587	chr2R	5902157	intron	CG43366 +	chr2R	5905950	intron	CG43366 +	chr2R	5909744	intron	CG43366 +	chr2R_4_5905001	chr2R_5905001	RAL-852
201	chr2R	6096719	6096731	chr2R	6101916	6101928	BS	4	5197	3.0	2.5	2.8	1.1	5209	chr2R	6096719	intron	EcR -	chr2R	6099324	intron	EcR -	chr2R	6101928	intron	EcR -	chr2R_4_6095001	chr2R_6095001	RAL-852
209	chr2R	7209850	7209869	chr2R	7217597	7217617	roo	4	7747	1.5	3.0	2.2	1.2	7767	chr2R	7209850	intron	pk +	chr2R	7213734	intron	pk +	chr2R	7217617	intron	pk +	chr2R_4_7210001	chr2R_7210001	RAL-852
212	chr2R	7869194	7869221	chr2R	7873979	7874004	Doc	6	4784	3.5	2.5	3.0	1.5	4810	chr2R	7869194	intron	Dgk -	chr2R	7871599	intron	Dgk -	chr2R	7874004	intron	Dgk -	chr2R_6_7870001	chr2R_7870001	RAL-852
219	chr2R	8566031	8566065	chr2R	8566983	8567011	1360	4	949	1.0	0.0	0.5	2.7	980	chr2R	8566031	5` UTR	Cyp6a14 -	chr2R	8566521	5` UTR	Cyp6a14 -	chr2R	8567011	5` UTR	Cyp6a14 -	chr2R_4_8565001	chr2R_8565001	RAL-852
226	chr2R	9480077	9480100	chr2R	9490608	9490631	roo	5	10531	2.0	0.5	1.2	2.3	10554	chr2R	9480077	intergenic	not near genes	chr2R	9485354	intergenic	not near genes	chr2R	9490631	intergenic	not near genes	chr2R_5_9485001	chr2R_9485001	RAL-852
229	chr2R	10176880	10176910	chr2R	10186047	10186077	roo	5	9166	0.5	0.5	0.5	3.3	9197	chr2R	10176880	intron	KCNQ -	chr2R	10181478	intron	KCNQ -	chr2R	10186077	intron	KCNQ -	chr2R_5_10180001	chr2R_10180001	RAL-852
241	chr2R	11297625	11297649	chr2R	11301946	11301970	flea	6	4321	0.5	2.0	1.2	2.7	4345	chr2R	11297625	intergenic	CG42336 -	chr2R	11299798	intergenic	not near genes	chr2R	11301970	5` UTR	CG7741 +	chr2R_6_11295001	chr2R_11295001	RAL-852
243	chr2R	11415529	11415550	chr2R	11418677	11418698	opus	4	3148	1.5	3.5	2.5	1.1	3169	chr2R	11415529	intron	Drip -	chr2R	11417114	intron	Drip -	chr2R	11418698	intron	Drip -	chr2R_4_11415001	chr2R_11415001	RAL-852
244	chr2R	11472658	11472677	chr2R	11473851	11473873	pogo	5	1196	1.5	2.5	2.0	1.7	1215	chr2R	11472658	intergenic	not near genes	chr2R	11473266	intergenic	not near genes	chr2R	11473873	intergenic	not near genes	chr2R_5_11470001	chr2R_11470001	RAL-852
249	chr2R	12789293	12789311	chr2R	12797656	12797673	roo	4	8362	1.0	1.0	1.0	2.0	8380	chr2R	12789293	intron,3` UTR	sca +,CR45137 -	chr2R	12793483	intron,intron	sca +,CR45137 -	chr2R	12797673	intron,3` UTR	sca +,CR45137 -	chr2R_4_12790001	chr2R_12790001	RAL-852
250	chr2R	12819448	12819465	chr2R	12824520	12824538	jockey	4	5073	1.0	3.0	2.0	1.3	5090	chr2R	12819448	intergenic	not near genes	chr2R	12821993	intergenic	not near genes	chr2R	12824538	intergenic	not near genes	chr2R_4_12820001	chr2R_12820001	RAL-852
252	chr2R	13136841	13136869	chr2R	13141639	13141666	Doc	8	4798	0.5	0.0	0.2	6.7	4825	chr2R	13136841	exon	Cap-G +	chr2R	13139254	intron	Cap-G +	chr2R	13141666	intron	Cap-G +	chr2R_8_13135001	chr2R_13135001	RAL-852
256	chr2R	13580498	13580531	chr2R	13580848	13580880	jockey	4	350	0.0	1.0	0.5	2.7	382	chr2R	13580498	3` UTR	CG6191 -	chr2R	13580689	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580880	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_4_13580001	chr2R_13580001	RAL-852
264	chr2R	14889216	14889234	chr2R	14897823	14897842	Max-element	4	8608	2.5	0.0	1.2	1.8	8626	chr2R	14889216	intergenic	Cyp6a8 -	chr2R	14893529	intergenic	not near genes	chr2R	14897842	intergenic	not near genes	chr2R_4_14890001	chr2R_14890001	RAL-852
266	chr2R	15015469	15015480	chr2R	15022888	15022904	mdg1	6	7423	1.0	2.5	1.8	2.1	7435	chr2R	15015469	intron	hbs +	chr2R	15019186	intron	hbs +	chr2R	15022904	intron	hbs +	chr2R_6_15015001	chr2R_15015001	RAL-852
278	chr2R	17147246	17147270	chr2R	17152272	17152301	jockey	5	5030	1.5	0.5	1.0	2.5	5055	chr2R	17147246	intergenic	not near genes	chr2R	17149774	intergenic	not near genes	chr2R	17152301	intergenic	not near genes	chr2R_5_17145001	chr2R_17145001	RAL-852
280	chr2R	17236513	17236539	chr2R	17241716	17241743	copia	8	5202	0.5	1.5	1.0	4.0	5230	chr2R	17236513	intron	mbl +	chr2R	17239128	intron	mbl +	chr2R	17241743	intron	mbl +	chr2R_8_17235001	chr2R_17235001	RAL-852
292	chr2R	18575808	18575824	chr2R	18581995	18582011	3S18	4	6188	0.0	2.5	1.2	1.8	6203	chr2R	18575808	intron	GEFmeso -	chr2R	18578910	intron	GEFmeso -	chr2R	18582011	intron	GEFmeso -	chr2R_4_18575001	chr2R_18575001	RAL-852
293	chr2R	18590866	18590894	chr2R	18600018	18600044	roo	4	9152	2.0	0.0	1.0	2.0	9178	chr2R	18590866	intron	GEFmeso -	chr2R	18595455	intron	GEFmeso -	chr2R	18600044	intron	GEFmeso -	chr2R_4_18595001	chr2R_18595001	RAL-852
299	chr2R	19776595	19776621	chr2R	19779918	19779943	jockey	4	3323	0.0	0.5	0.2	3.3	3348	chr2R	19776595	intergenic	not near genes	chr2R	19778269	intergenic	not near genes	chr2R	19779943	intergenic	not near genes	chr2R_4_19775001	chr2R_19775001	RAL-852
300	chr2R	19914845	19914866	chr2R	19922257	19922278	mdg1	4	7412	1.0	2.0	1.5	1.6	7433	chr2R	19914845	intergenic	not near genes	chr2R	19918562	intergenic	not near genes	chr2R	19922278	intergenic	not near genes	chr2R_4_19915001	chr2R_19915001	RAL-852
301	chr2R	19957437	19957449	chr2R	19962638	19962651	copia	4	5202	0.0	0.5	0.2	3.3	5214	chr2R	19957437	intergenic	CG44623 +	chr2R	19960044	intergenic	not near genes	chr2R	19962651	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	RAL-852
311	chr2R	20739444	20739477	chr2R	20744212	20744239	F-element	4	4764	0.5	2.0	1.2	1.8	4795	chr2R	20739444	intron	dpr +	chr2R	20741842	intron	dpr +	chr2R	20744239	intron	dpr +	chr2R_4_20740001	chr2R_20740001	RAL-852
314	chr2R	21753083	21753116	chr2R	21753568	21753601	roo	5	485	2.5	1.5	2.0	1.7	518	chr2R	21753083	intergenic	not near genes	chr2R	21753342	intergenic	not near genes	chr2R	21753601	intergenic	not near genes	chr2R_5_21750001	chr2R_21750001	RAL-852
319	chr2R	22349691	22349719	chr2R	22351475	22351503	jockey	4	1784	1.5	1.0	1.2	1.8	1812	chr2R	22349691	intron	Liprin-gamma -	chr2R	22350597	intron	Liprin-gamma -	chr2R	22351503	intron	Liprin-gamma -	chr2R_4_22350001	chr2R_22350001	RAL-852
322	chr2R	22525768	22525785	chr2R	22529327	22529343	jockey	5	3558	1.0	1.5	1.2	2.3	3575	chr2R	22525768	intron	px -	chr2R	22527556	intron	px -	chr2R	22529343	intron	px -	chr2R_5_22525001	chr2R_22525001	RAL-852
324	chr2R	22774966	22774992	chr2R	22775384	22775411	jockey	6	419	0.5	0.5	0.5	4.0	445	chr2R	22774966	intron	CG42260 -	chr2R	22775188	intron	CG42260 -	chr2R	22775411	intron	CG42260 -	chr2R_6_22775001	chr2R_22775001	RAL-852
332	chr2R	23529575	23529596	chr2R	23537151	23537166	412	4	7574	1.5	1.5	1.5	1.6	7591	chr2R	23529575	intron	bw -	chr2R	23533370	intron	bw -	chr2R	23537166	exon	bw -	chr2R_4_23530001	chr2R_23530001	RAL-852
335	chr2R	23914321	23914330	chr2R	23921944	23921954	412	5	7623	0.5	1.5	1.0	2.5	7633	chr2R	23914321	exon	kcc +	chr2R	23918138	intron	kcc +	chr2R	23921954	intron	kcc +	chr2R_5_23915001	chr2R_23915001	RAL-852
337	chr2R	24147067	24147088	chr2R	24154645	24154666	412	5	7577	1.0	3.0	2.0	1.7	7599	chr2R	24147067	intron	Dat +	chr2R	24150866	intron	Dat +	chr2R	24154666	intron	Dat +	chr2R_5_24150001	chr2R_24150001	RAL-852
338	chr2R	24177242	24177257	chr2R	24184727	24184742	412	6	7485	4.0	1.5	2.8	1.6	7500	chr2R	24177242	3` UTR	Nop60B +	chr2R	24180992	intron	Nop60B +	chr2R	24184742	3` UTR	Nop60B +	chr2R_6_24180001	chr2R_24180001	RAL-852
339	chr2R	24353427	24353462	chr2R	24361788	24361824	roo	7	8362	1.0	1.0	1.0	3.5	8397	chr2R	24353427	intron,intron	bs +,CR44811 -	chr2R	24357626	intron,intron	bs +,CR44811 -	chr2R	24361824	intron,intron	bs +,CR44811 -	chr2R_7_24355001	chr2R_24355001	RAL-852
344	chr2R	24727890	24727918	chr2R	24735398	24735426	mdg1	6	7508	1.0	5.0	3.0	1.5	7536	chr2R	24727890	intron	Mid1 -	chr2R	24731658	intron	Mid1 -	chr2R	24735426	intron	Mid1 -	chr2R_6_24730001	chr2R_24730001	RAL-852
345	chr2R	24763613	24763641	chr2R	24765588	24765617	G2	6	1976	2.5	3.0	2.8	1.6	2004	chr2R	24763613	exon	CG3894 +	chr2R	24764615	intron	CG3894 +	chr2R	24765617	exon	CG3894 +	chr2R_6_24760001	chr2R_24760001	RAL-852
360	chr3L	402694	402717	chr3L	409746	409770	297	12	7052	6.0	5.5	5.8	1.8	7076	chr3L	402694	intergenic	not near genes	chr3L	406232	intergenic	not near genes	chr3L	409770	intergenic	not near genes	chr3L_12_405001	chr3L_405001	RAL-852
380	chr3L	2447505	2447536	chr3L	2456661	2456692	roo	4	9156	2.0	2.0	2.0	1.3	9187	chr3L	2447505	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456692	intron	CG45186 +	chr3L_4_2450001	chr3L_2450001	RAL-852
390	chr3L	3281436	3281461	chr3L	3281932	3281957	Doc	9	496	2.5	2.0	2.2	2.8	521	chr3L	3281436	intron	CG12017 +	chr3L	3281696	intron	CG12017 +	chr3L	3281957	intron	CG12017 +	chr3L_9_3280001	chr3L_3280001	RAL-852
391	chr3L	3475079	3475101	chr3L	3475523	3475545	jockey	4	444	2.0	0.0	1.0	2.0	466	chr3L	3475079	intron	CG42324 +	chr3L	3475312	intron	CG42324 +	chr3L	3475545	intron	CG42324 +	chr3L_4_3475001	chr3L_3475001	RAL-852
406	chr3L	4901136	4901155	chr3L	4907326	4907345	diver	5	6190	2.0	3.0	2.5	1.4	6209	chr3L	4901136	intergenic	CG13704 +	chr3L	4904240	intergenic	not near genes	chr3L	4907345	intergenic	not near genes	chr3L_5_4900001	chr3L_4900001	RAL-852
416	chr3L	5910033	5910057	chr3L	5910274	5910298	pogo	5	241	1.5	1.5	1.5	2.0	265	chr3L	5910033	intron	CG13288 +	chr3L	5910166	intron	CG13288 +	chr3L	5910298	intron	CG13288 +	chr3L_5_5910001	chr3L_5910001	RAL-852
417	chr3L	6001682	6001714	chr3L	6004382	6004414	jockey	4	2700	2.0	0.0	1.0	2.0	2732	chr3L	6001682	intron	PVRAP +	chr3L	6003048	intron	PVRAP +	chr3L	6004414	intron	PVRAP +	chr3L_4_6000001	chr3L_6000001	RAL-852
420	chr3L	6220917	6220947	chr3L	6230069	6230096	roo	9	9152	1.0	0.5	0.8	5.0	9179	chr3L	6220917	5` UTR	pncr008:3L +	chr3L	6225506	intergenic	not near genes	chr3L	6230096	intergenic	not near genes	chr3L_9_6225001	chr3L_6225001	RAL-852
443	chr3L	8481784	8481802	chr3L	8490940	8490960	roo	5	9158	1.0	3.0	2.0	1.7	9176	chr3L	8481784	intron	CG43163 -	chr3L	8486372	intron	CG43163 -	chr3L	8490960	intron	CG43163 -	chr3L_5_8485001	chr3L_8485001	RAL-852
444	chr3L	8498308	8498325	chr3L	8505775	8505792	blood	4	7467	0.0	0.0	0.0	4.0	7484	chr3L	8498308	intron	CG43163 -	chr3L	8502050	intron	CG43163 -	chr3L	8505792	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	RAL-852
449	chr3L	9130562	9130581	chr3L	9134323	9134341	412	5	3760	2.0	1.0	1.5	2.0	3779	chr3L	9130562	intergenic	bol -	chr3L	9132452	intergenic	not near genes	chr3L	9134341	intergenic	Dhpr +	chr3L_5_9130001	chr3L_9130001	RAL-852
450	chr3L	9164699	9164726	chr3L	9166166	9166192	hobo	4	1466	1.5	1.5	1.5	1.6	1493	chr3L	9164699	intron	Rdl -	chr3L	9165446	intron	Rdl -	chr3L	9166192	intron	Rdl -	chr3L_4_9165001	chr3L_9165001	RAL-852
455	chr3L	9571909	9571935	chr3L	9572257	9572283	jockey	7	348	0.5	2.5	1.5	2.8	374	chr3L	9571909	intron	CG42673 +	chr3L	9572096	intron	CG42673 +	chr3L	9572283	intron	CG42673 +	chr3L_7_9570001	chr3L_9570001	RAL-852
464	chr3L	11087063	11087080	chr3L	11088850	11088869	S-element	4	1788	0.5	1.0	0.8	2.2	1806	chr3L	11087063	intron	JIL-1 -	chr3L	11087966	intron	JIL-1 -	chr3L	11088869	intron	JIL-1 -	chr3L_4_11085001	chr3L_11085001	RAL-852
466	chr3L	11277465	11277475	chr3L	11278456	11278470	Rt1a	4	994	2.0	2.5	2.2	1.2	1005	chr3L	11277465	intergenic	not near genes	chr3L	11277968	intergenic	not near genes	chr3L	11278470	intergenic	not near genes	chr3L_4_11275001	chr3L_11275001	RAL-852
468	chr3L	11564799	11564813	chr3L	11572424	11572438	412	4	7625	1.5	3.0	2.2	1.2	7639	chr3L	11564799	exon	CG33267 +	chr3L	11568618	intron	CG33267 +	chr3L	11572438	exon	CG33267 +	chr3L_4_11565001	chr3L_11565001	RAL-852
471	chr3L	11723088	11723115	chr3L	11727883	11727910	Doc	6	4795	2.0	0.5	1.2	2.7	4822	chr3L	11723088	3` UTR	Bmcp +	chr3L	11725499	intron	Bmcp +	chr3L	11727910	3` UTR	Bmcp +	chr3L_6_11725001	chr3L_11725001	RAL-852
475	chr3L	11864561	11864582	chr3L	11865856	11865877	pogo	6	1294	2.0	4.0	3.0	1.5	1316	chr3L	11864561	intron	CG44837 -	chr3L	11865219	intron	CG44837 -	chr3L	11865877	intron	CG44837 -	chr3L_6_11865001	chr3L_11865001	RAL-852
487	chr3L	13525164	13525175	chr3L	13532960	13532969	roo	4	7795	2.5	3.5	3.0	1.0	7805	chr3L	13525164	intergenic	not near genes	chr3L	13529066	intergenic	not near genes	chr3L	13532969	intergenic	not near genes	chr3L_4_13525001	chr3L_13525001	RAL-852
493	chr3L	14245571	14245584	chr3L	14245665	14245676	1360	5	93	1.5	2.0	1.8	1.8	105	chr3L	14245571	3` UTR	CR44561 -	chr3L	14245624	3` UTR	CR44561 -	chr3L	14245676	3` UTR	CR44561 -	chr3L_5_14245001	chr3L_14245001	RAL-852
494	chr3L	14295982	14296012	chr3L	14296468	14296497	roo	9	485	2.5	1.5	2.0	3.0	515	chr3L	14295982	intron	fz +	chr3L	14296240	intron	fz +	chr3L	14296497	intron	fz +	chr3L_9_14295001	chr3L_14295001	RAL-852
497	chr3L	14514694	14514696	chr3L	22908066	22908066	Stalker2	4	8393371	6.5	11.0	8.8	0.4	8393372	chr3L	14514694	intron	bbg -	chr3L	18711380	intergenic	not near genes	chr3L	22908066	intergenic	not near genes	chr3L_4_18710001	chr3L_18710001	RAL-852
499	chr3L	14721181	14721201	chr3L	14723024	14723043	Rt1c	4	1842	2.0	1.0	1.5	1.6	1862	chr3L	14721181	intron	ome +	chr3L	14722112	intron	ome +	chr3L	14723043	intron	ome +	chr3L_4_14720001	chr3L_14720001	RAL-852
503	chr3L	15085048	15085066	chr3L	15086214	15086232	1360	4	1166	0.5	0.5	0.5	2.7	1184	chr3L	15085048	intron	cp309 -	chr3L	15085640	intron	cp309 -	chr3L	15086232	intron	cp309 -	chr3L_4_15085001	chr3L_15085001	RAL-852
509	chr3L	15899232	15899257	chr3L	15899792	15899823	jockey	4	564	1.0	1.5	1.2	1.8	591	chr3L	15899232	intergenic	pHCl -	chr3L	15899528	intergenic	pHCl -	chr3L	15899823	intergenic	sff -	chr3L_4_15895001	chr3L_15895001	RAL-852
510	chr3L	15929202	15929227	chr3L	15938349	15938374	roo	7	9147	0.5	1.5	1.0	3.5	9172	chr3L	15929202	intron	Pka-C3 -	chr3L	15933788	intron	Pka-C3 -	chr3L	15938374	intron	Pka-C3 -	chr3L_7_15930001	chr3L_15930001	RAL-852
512	chr3L	16184103	16184141	chr3L	16188922	16188957	X-element	9	4818	1.5	0.0	0.8	5.0	4854	chr3L	16184103	intergenic	not near genes	chr3L	16186530	intergenic	not near genes	chr3L	16188957	intergenic	not near genes	chr3L_9_16185001	chr3L_16185001	RAL-852
514	chr3L	16443850	16443877	chr3L	16446188	16446217	Doc	7	2338	1.5	2.0	1.8	2.5	2367	chr3L	16443850	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445034	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446217	intron,intron	CG33158 +,dsx-c73A -	chr3L_7_16445001	chr3L_16445001	RAL-852
518	chr3L	16616508	16616543	chr3L	16621836	16621871	297	12	5328	1.0	0.5	0.8	6.7	5363	chr3L	16616508	3` UTR	Abl -	chr3L	16619190	3` UTR	Abl -	chr3L	16621871	3` UTR	Abl -	chr3L_12_16615001	chr3L_16615001	RAL-852
522	chr3L	17085003	17085032	chr3L	17094152	17094181	roo	6	9149	1.0	1.0	1.0	3.0	9178	chr3L	17085003	intron	Rbp6 -	chr3L	17089592	intron	Rbp6 -	chr3L	17094181	intron	Rbp6 -	chr3L_6_17085001	chr3L_17085001	RAL-852
530	chr3L	18047714	18047739	chr3L	18056771	18056793	roo	4	9056	0.5	1.5	1.0	2.0	9079	chr3L	18047714	intron	Eip75B -	chr3L	18052254	intron	Eip75B -	chr3L	18056793	intron	Eip75B -	chr3L_4_18050001	chr3L_18050001	RAL-852
533	chr3L	18528629	18528658	chr3L	18537790	18537819	roo	7	9161	1.5	1.5	1.5	2.8	9190	chr3L	18528629	intergenic	not near genes	chr3L	18533224	intergenic	not near genes	chr3L	18537819	intergenic	not near genes	chr3L_7_18530001	chr3L_18530001	RAL-852
536	chr3L	18772418	18772437	chr3L	18781099	18781118	roo	5	8681	0.0	0.5	0.2	4.2	8700	chr3L	18772418	intron	ftz-f1 -	chr3L	18776768	intron	ftz-f1 -	chr3L	18781118	intron	ftz-f1 -	chr3L_5_18775001	chr3L_18775001	RAL-852
543	chr3L	19208057	19208088	chr3L	19209431	19209462	Doc	6	1372	1.0	0.5	0.8	3.3	1405	chr3L	19208057	intron	fz2 -	chr3L	19208760	intron	fz2 -	chr3L	19209462	intron	fz2 -	chr3L_6_19205001	chr3L_19205001	RAL-852
552	chr3L	20257332	20257357	chr3L	20258452	20258477	pogo	4	1120	1.5	2.5	2.0	1.3	1145	chr3L	20257332	intron	rdgC +	chr3L	20257904	intron	rdgC +	chr3L	20258477	intron	rdgC +	chr3L_4_20255001	chr3L_20255001	RAL-852
555	chr3L	20476759	20476785	chr3L	20484358	20484384	springer	6	7599	0.5	2.0	1.2	2.7	7625	chr3L	20476759	3` UTR	isoQC +	chr3L	20480572	intergenic	not near genes	chr3L	20484384	3` UTR	ZnT77C -	chr3L_6_20480001	chr3L_20480001	RAL-852
557	chr3L	21151862	21151895	chr3L	21156946	21156979	flea	7	5084	0.5	0.5	0.5	4.7	5117	chr3L	21151862	intron	Ac78C -	chr3L	21154420	intron	Ac78C -	chr3L	21156979	intron	Ac78C -	chr3L_7_21150001	chr3L_21150001	RAL-852
558	chr3L	21749317	21749344	chr3L	21754477	21754504	Doc	4	5160	1.5	1.0	1.2	1.8	5187	chr3L	21749317	intron	Syn1 -	chr3L	21751910	intron	Syn1 -	chr3L	21754504	intron	Syn1 -	chr3L_4_21750001	chr3L_21750001	RAL-852
571	chr3L	22577638	22577651	chr3L	22582426	22582439	Doc	4	4788	1.0	4.0	2.5	1.1	4801	chr3L	22577638	intergenic	not near genes	chr3L	22580038	intergenic	not near genes	chr3L	22582439	3` UTR	CG14459 -	chr3L_4_22580001	chr3L_22580001	RAL-852
572	chr3L	22617195	22617215	chr3L	22624647	22624667	blood	4	7452	1.5	3.0	2.2	1.2	7472	chr3L	22617195	intron	CG14459 -	chr3L	22620931	intron	CG14459 -	chr3L	22624667	intron	CG14459 -	chr3L_4_22620001	chr3L_22620001	RAL-852
573	chr3L	22865988	22866007	chr3L	22867121	22867140	Doc	4	1133	2.5	1.0	1.8	1.4	1152	chr3L	22865988	intron	CG33170 +	chr3L	22866564	intron	CG33170 +	chr3L	22867140	intron	CG33170 +	chr3L_4_22865001	chr3L_22865001	RAL-852
575	chr3L	22989861	22989886	chr3L	22996835	22996860	297	6	6973	1.0	1.0	1.0	3.0	6999	chr3L	22989861	intergenic	not near genes	chr3L	22993360	intergenic	not near genes	chr3L	22996860	intergenic	not near genes	chr3L_6_22990001	chr3L_22990001	RAL-852
579	chr3L	25628500	25628526	chr3L	25633270	25633296	F-element	6	4770	0.5	2.0	1.2	2.7	4796	chr3L	25628500	intron	CG41343 -	chr3L	25630898	intron	CG41343 -	chr3L	25633296	intron	CG41343 -	chr3L_6_25630001	chr3L_25630001	RAL-852
587	chr3R	4609545	4609574	chr3R	4610709	4610738	1360	9	1164	1.5	1.0	1.2	4.1	1193	chr3R	4609545	intergenic	not near genes	chr3R	4610142	intergenic	not near genes	chr3R	4610738	intergenic	not near genes	chr3R_9_4610001	chr3R_4610001	RAL-852
588	chr3R	4753240	4753271	chr3R	4757543	4757574	F-element	8	4302	1.0	1.0	1.0	4.0	4334	chr3R	4753240	intron,intron	atms +,CG44098 -	chr3R	4755407	intron,intron	atms +,CG44098 -	chr3R	4757574	intron,exon	atms +,CG44098 -	chr3R_8_4755001	chr3R_4755001	RAL-852
589	chr3R	4759723	4759749	chr3R	4761219	4761246	hopper2	6	1496	1.0	5.0	3.0	1.5	1523	chr3R	4759723	intron,intron	atms +,CG44098 -	chr3R	4760484	intron,intron	atms +,CG44098 -	chr3R	4761246	intron,intron	atms +,CG44098 -	chr3R_6_4760001	chr3R_4760001	RAL-852
594	chr3R	5045845	5045869	chr3R	5052947	5052971	HMS-Beagle	7	7102	2.5	2.0	2.2	2.2	7126	chr3R	5045845	intron	CR43635 -	chr3R	5049408	intergenic	not near genes	chr3R	5052971	intergenic	CR45588 -	chr3R_7_5045001	chr3R_5045001	RAL-852
599	chr3R	5338402	5338419	chr3R	5343574	5343596	Rt1c	4	5176	3.5	3.0	3.2	1.0	5194	chr3R	5338402	intron	mtd -	chr3R	5340999	intron	mtd -	chr3R	5343596	intron	mtd -	chr3R_4_5340001	chr3R_5340001	RAL-852
602	chr3R	5822382	5822410	chr3R	5823549	5823577	1360	6	1167	1.5	3.0	2.2	1.9	1195	chr3R	5822382	3` UTR	CG2023 -	chr3R	5822980	3` UTR	CG2023 -	chr3R	5823577	3` UTR	CG2023 -	chr3R_6_5820001	chr3R_5820001	RAL-852
603	chr3R	5927563	5927589	chr3R	5927801	5927829	pogo	8	239	1.5	1.5	1.5	3.2	266	chr3R	5927563	intron	CG34113 -	chr3R	5927696	intron	CG34113 -	chr3R	5927829	intron	CG34113 -	chr3R_8_5925001	chr3R_5925001	RAL-852
608	chr3R	6206288	6206316	chr3R	6206505	6206533	BS	9	217	0.0	1.0	0.5	6.0	245	chr3R	6206288	exon	Osi24 +	chr3R	6206410	intron	Osi24 +	chr3R	6206533	intron	Osi24 +	chr3R_9_6205001	chr3R_6205001	RAL-852
610	chr3R	6737501	6737532	chr3R	6739288	6739319	Doc	10	1786	1.5	1.5	1.5	4.0	1818	chr3R	6737501	intron	pb -	chr3R	6738410	intron	pb -	chr3R	6739319	intron	pb -	chr3R_10_6735001	chr3R_6735001	RAL-852
619	chr3R	7729467	7729494	chr3R	7737404	7737432	Stalker2	4	7938	0.5	0.5	0.5	2.7	7965	chr3R	7729467	intergenic	not near genes	chr3R	7733450	intergenic	not near genes	chr3R	7737432	intergenic	not near genes	chr3R_4_7730001	chr3R_7730001	RAL-852
624	chr3R	8403007	8403036	chr3R	8412171	8412201	roo	8	9166	2.0	1.0	1.5	3.2	9194	chr3R	8403007	intron	CG45263 -	chr3R	8407604	intron	CG45263 -	chr3R	8412201	intron	CG45263 -	chr3R_8_8405001	chr3R_8405001	RAL-852
626	chr3R	8570477	8570510	chr3R	8575112	8575146	HMS-Beagle	4	4636	2.0	0.5	1.2	1.8	4669	chr3R	8570477	intergenic	not near genes	chr3R	8572812	intergenic	not near genes	chr3R	8575146	intergenic	not near genes	chr3R_4_8570001	chr3R_8570001	RAL-852
635	chr3R	9319572	9319606	chr3R	9320007	9320041	jockey	7	434	1.0	4.0	2.5	2.0	469	chr3R	9319572	intron	CG8861 -	chr3R	9319806	intron	CG8861 -	chr3R	9320041	intron	CG8861 -	chr3R_7_9315001	chr3R_9315001	RAL-852
651	chr3R	11379236	11379267	chr3R	11388391	11388422	roo	4	9154	2.0	0.5	1.2	1.8	9186	chr3R	11379236	intron	pros +	chr3R	11383829	intron	pros +	chr3R	11388422	intron	pros +	chr3R_4_11380001	chr3R_11380001	RAL-852
653	chr3R	12022890	12022912	chr3R	12025067	12025089	pogo	6	2177	1.5	3.0	2.2	1.9	2199	chr3R	12022890	intergenic	not near genes	chr3R	12023990	intergenic	not near genes	chr3R	12025089	intergenic	not near genes	chr3R_6_12020001	chr3R_12020001	RAL-852
673	chr3R	14180818	14180837	chr3R	14185583	14185601	F-element	4	4765	3.0	1.0	2.0	1.3	4783	chr3R	14180818	intron	Dop1R1 -	chr3R	14183210	intron	Dop1R1 -	chr3R	14185601	intron	Dop1R1 -	chr3R_4_14180001	chr3R_14180001	RAL-852
675	chr3R	14246391	14246416	chr3R	14247887	14247912	jockey	5	1496	3.0	1.0	2.0	1.7	1521	chr3R	14246391	intergenic	not near genes	chr3R	14247152	intergenic	not near genes	chr3R	14247912	intergenic	not near genes	chr3R_5_14245001	chr3R_14245001	RAL-852
685	chr3R	15132064	15132087	chr3R	15135123	15135147	Juan	6	3060	2.0	3.0	2.5	1.7	3083	chr3R	15132064	intergenic	CG42788 -	chr3R	15133606	intergenic	not near genes	chr3R	15135147	3` UTR	CG6912 -	chr3R_6_15130001	chr3R_15130001	RAL-852
690	chr3R	15601163	15601194	chr3R	15608685	15608716	412	10	7522	1.5	1.5	1.5	4.0	7553	chr3R	15601163	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608716	intergenic	not near genes	chr3R_10_15600001	chr3R_15600001	RAL-852
691	chr3R	15618752	15618757	chr3R	15626226	15626231	blood	4	7474	0.5	2.0	1.2	1.8	7479	chr3R	15618752	intergenic	not near genes	chr3R	15622492	intergenic	not near genes	chr3R	15626231	intergenic	not near genes	chr3R_4_15620001	chr3R_15620001	RAL-852
711	chr3R	18331781	18331790	chr3R	18333275	18333283	hopper2	4	1494	1.5	0.5	1.0	2.0	1502	chr3R	18331781	3` UTR	CG15803 -	chr3R	18332532	intron	CG15803 -	chr3R	18333283	3` UTR	CG15803 -	chr3R_4_18330001	chr3R_18330001	RAL-852
714	chr3R	18606502	18606524	chr3R	18610734	18610756	F-element	4	4232	2.0	0.5	1.2	1.8	4254	chr3R	18606502	intron,intron	qin +,CG14304 -	chr3R	18608629	intron,intron	qin +,CG14304 -	chr3R	18610756	intron,intron	qin +,CG14304 -	chr3R_4_18605001	chr3R_18605001	RAL-852
730	chr3R	20266516	20266531	chr3R	20272987	20273002	Burdock	5	6471	1.0	0.5	0.8	2.8	6486	chr3R	20266516	intron	cic +	chr3R	20269759	intron	cic +	chr3R	20273002	intron	cic +	chr3R_5_20265001	chr3R_20265001	RAL-852
734	chr3R	21141680	21141704	chr3R	21150161	21150185	Tirant	6	8480	0.5	2.0	1.2	2.7	8505	chr3R	21141680	intron	SNF4Agamma +	chr3R	21145932	intron	SNF4Agamma +	chr3R	21150185	intron	SNF4Agamma +	chr3R_6_21145001	chr3R_21145001	RAL-852
736	chr3R	21761126	21761154	chr3R	21768518	21768546	mdg1	5	7392	3.0	2.5	2.8	1.3	7420	chr3R	21761126	exon	CG42335 +	chr3R	21764836	intron	CG42335 +	chr3R	21768546	exon	CG42335 +	chr3R_5_21760001	chr3R_21760001	RAL-852
750	chr3R	22239491	22239501	chr3R	22248550	22248561	roo	4	9060	2.0	0.0	1.0	2.0	9070	chr3R	22239491	intron	SKIP +	chr3R	22244026	intron	SKIP +	chr3R	22248561	intron	SKIP +	chr3R_4_22240001	chr3R_22240001	RAL-852
751	chr3R	22450542	22450576	chr3R	22453182	22453216	NOF	7	2640	2.0	1.0	1.5	2.8	2674	chr3R	22450542	intron	CG34376 +	chr3R	22451879	intron	CG34376 +	chr3R	22453216	intron	CG34376 +	chr3R_7_22450001	chr3R_22450001	RAL-852
761	chr3R	23684698	23684724	chr3R	23685182	23685209	roo	5	485	0.5	1.0	0.8	2.8	511	chr3R	23684698	exon	CG18754 +	chr3R	23684954	intron	CG18754 +	chr3R	23685209	exon	CG18754 +	chr3R_5_23680001	chr3R_23680001	RAL-852
763	chr3R	24076942	24076948	chr3R	24078409	24078414	hobo	4	1467	2.5	3.0	2.8	1.1	1472	chr3R	24076942	intron	4EHP -	chr3R	24077678	intron	4EHP -	chr3R	24078414	intron	4EHP -	chr3R_4_24075001	chr3R_24075001	RAL-852
766	chr3R	24730097	24730116	chr3R	24732475	24732488	Doc	4	2374	1.0	0.0	0.5	2.7	2391	chr3R	24730097	intron	tok +	chr3R	24731292	intron	tok +	chr3R	24732488	intron	tok +	chr3R_4_24730001	chr3R_24730001	RAL-852
776	chr3R	25832696	25832722	chr3R	25841876	25841904	roo	4	9182	2.5	3.0	2.8	1.1	9208	chr3R	25832696	exon	alpha4GT2 +	chr3R	25837300	intron	alpha4GT2 +	chr3R	25841904	exon	alpha4GT2 +	chr3R_4_25835001	chr3R_25835001	RAL-852
788	chr3R	27342793	27342824	chr3R	27351372	27351400	Tirant	6	8580	1.5	1.0	1.2	2.7	8607	chr3R	27342793	intron	CG42534 +	chr3R	27347096	intron	CG42534 +	chr3R	27351400	intron	CG42534 +	chr3R_6_27345001	chr3R_27345001	RAL-852
795	chr3R	27725564	27725590	chr3R	27731005	27731032	I-element	5	5442	1.5	1.0	1.2	2.3	5468	chr3R	27725564	intergenic	not near genes	chr3R	27728298	intergenic	not near genes	chr3R	27731032	intergenic	not near genes	chr3R_5_27725001	chr3R_27725001	RAL-852
798	chr3R	27856762	27856784	chr3R	27858245	27858267	hopper2	6	1483	1.5	2.0	1.8	2.1	1505	chr3R	27856762	intron	CG34353 -	chr3R	27857514	intron	CG34353 -	chr3R	27858267	intron	CG34353 -	chr3R_6_27855001	chr3R_27855001	RAL-852
799	chr3R	27862963	27862980	chr3R	27868266	27868285	Transpac	4	5304	1.0	0.0	0.5	2.7	5322	chr3R	27862963	intron	CG34353 -	chr3R	27865624	intron	CG34353 -	chr3R	27868285	intron	CG34353 -	chr3R_4_27865001	chr3R_27865001	RAL-852
800	chr3R	27875703	27875713	chr3R	27882758	27882768	297	5	7055	4.5	3.0	3.8	1.0	7065	chr3R	27875703	intron	CG34353 -	chr3R	27879236	intron	CG34353 -	chr3R	27882768	intron	CG34353 -	chr3R_5_27875001	chr3R_27875001	RAL-852
805	chr3R	28302103	28302130	chr3R	28302541	28302569	jockey	5	439	3.0	1.5	2.2	1.6	466	chr3R	28302103	intergenic	not near genes	chr3R	28302336	intergenic	not near genes	chr3R	28302569	intergenic	not near genes	chr3R_5_28300001	chr3R_28300001	RAL-852
817	chr3R	29079403	29079410	chr3R	29080775	29080782	NOF	4	1372	0.5	1.5	1.0	2.0	1379	chr3R	29079403	intron	CG11873 +	chr3R	29080092	intron	CG11873 +	chr3R	29080782	intron	CG11873 +	chr3R_4_29080001	chr3R_29080001	RAL-852
819	chr3R	29406614	29406644	chr3R	29407900	29407929	jockey	8	1286	2.5	0.5	1.5	3.2	1315	chr3R	29406614	intron	Ptp99A +	chr3R	29407272	intron	Ptp99A +	chr3R	29407929	intron	Ptp99A +	chr3R_8_29405001	chr3R_29405001	RAL-852
825	chr3R	29882017	29882048	chr3R	29891174	29891205	roo	9	9157	2.0	0.0	1.0	4.5	9188	chr3R	29882017	intron	CG31038 +	chr3R	29886611	intron	CG31038 +	chr3R	29891205	intron	CG31038 +	chr3R_9_29885001	chr3R_29885001	RAL-852
830	chr3R	30238759	30238778	chr3R	30239923	30239942	1360	4	1164	1.5	0.0	0.8	2.2	1183	chr3R	30238759	intergenic	not near genes	chr3R	30239350	intergenic	not near genes	chr3R	30239942	intergenic	not near genes	chr3R_4_30235001	chr3R_30235001	RAL-852
832	chr3R	30480487	30480510	chr3R	30482955	30482978	jockey	6	2468	1.5	1.5	1.5	2.4	2491	chr3R	30480487	intron	PH4alphaEFB +	chr3R	30481732	intron	PH4alphaEFB +	chr3R	30482978	intron	PH4alphaEFB +	chr3R_6_30480001	chr3R_30480001	RAL-852
836	chr3R	30679520	30679546	chr3R	30686989	30687015	blood	6	7469	0.0	0.0	0.0	6.0	7495	chr3R	30679520	intergenic	not near genes	chr3R	30683268	intergenic	not near genes	chr3R	30687015	intergenic	not near genes	chr3R_6_30680001	chr3R_30680001	RAL-852
839	chr3R	31279379	31279394	chr3R	31285570	31285583	diver	4	6190	3.5	4.0	3.8	0.8	6204	chr3R	31279379	intergenic	not near genes	chr3R	31282481	intergenic	not near genes	chr3R	31285583	intergenic	not near genes	chr3R_4_31280001	chr3R_31280001	RAL-852
840	chr3R	31413099	31413119	chr3R	31418299	31418319	copia	6	5200	0.5	0.0	0.2	5.0	5220	chr3R	31413099	intron	Gprk2 +	chr3R	31415709	intron	Gprk2 +	chr3R	31418319	intron	Gprk2 +	chr3R_6_31415001	chr3R_31415001	RAL-852
843	chr3R	31691532	31691555	chr3R	31696298	31696321	Doc	6	4766	1.5	4.5	3.0	1.5	4789	chr3R	31691532	intergenic	not near genes	chr3R	31693926	intergenic	not near genes	chr3R	31696321	intergenic	not near genes	chr3R_6_31690001	chr3R_31690001	RAL-852
848	chrX	318471	318496	chrX	323557	323582	flea	5	5086	1.5	1.5	1.5	2.0	5111	chrX	318471	intron,intron	CG3777 +,CG32816 -	chrX	321026	intron,intron	CG3777 +,CG32816 -	chrX	323582	intron,intron	CG3777 +,CG32816 -	chrX_5_320001	chrX_320001	RAL-852
853	chrX	906703	906731	chrX	908492	908520	S-element	6	1789	1.5	4.5	3.0	1.5	1817	chrX	906703	intron	CG43867 -	chrX	907612	intron	CG43867 -	chrX	908520	intron	CG43867 -	chrX_6_905001	chrX_905001	RAL-852
856	chrX	1357777	1357797	chrX	1367947	1367967	Doc	4	10170	2.0	0.5	1.2	1.8	10190	chrX	1357777	intergenic	png -	chrX	1362872	intergenic	not near genes	chrX	1367967	intergenic	not near genes	chrX_4_1360001	chrX_1360001	RAL-852
857	chrX	1954892	1954910	chrX	1962831	1962850	Stalker2	4	7940	0.5	0.5	0.5	2.7	7958	chrX	1954892	intron	Hr4 +	chrX	1958871	intron	Hr4 +	chrX	1962850	intron	Hr4 +	chrX_4_1955001	chrX_1955001	RAL-852
861	chrX	2844915	2844927	chrX	2852325	2852337	mdg1	4	7410	1.0	1.5	1.2	1.8	7422	chrX	2844915	intron	kirre +	chrX	2848626	intron	kirre +	chrX	2852337	intron	kirre +	chrX_4_2845001	chrX_2845001	RAL-852
863	chrX	3058022	3058037	chrX	3058263	3058278	pogo	4	241	0.5	0.0	0.2	3.3	256	chrX	3058022	intron	kirre +	chrX	3058150	intron	kirre +	chrX	3058278	intron	kirre +	chrX_4_3055001	chrX_3055001	RAL-852
867	chrX	3597552	3597578	chrX	3619720	3619746	roo	7	22168	0.0	0.0	0.0	7.0	22194	chrX	3597552	intron	AstA-R1 +	chrX	3608649	intron	AstA-R1 +	chrX	3619746	intron	AstA-R1 +	chrX_7_3605001	chrX_3605001	RAL-852
869	chrX	3842329	3842347	chrX	3842570	3842588	pogo	6	241	1.0	1.0	1.0	3.0	259	chrX	3842329	intron	ec +	chrX	3842458	intron	ec +	chrX	3842588	intron	ec +	chrX_6_3840001	chrX_3840001	RAL-852
871	chrX	3986868	3986894	chrX	3994501	3994527	412	7	7633	1.5	2.5	2.0	2.3	7659	chrX	3986868	intergenic	not near genes	chrX	3990698	intergenic	not near genes	chrX	3994527	intergenic	not near genes	chrX_7_3990001	chrX_3990001	RAL-852
874	chrX	4157902	4157917	chrX	4164955	4164970	297	4	7053	0.5	1.5	1.0	2.0	7068	chrX	4157902	intron	Fas2 -	chrX	4161436	intron	Fas2 -	chrX	4164970	intron	Fas2 -	chrX_4_4160001	chrX_4160001	RAL-852
878	chrX	4827978	4827993	chrX	4835349	4835362	Stalker4	5	7369	3.5	1.0	2.2	1.6	7384	chrX	4827978	intergenic	not near genes	chrX	4831670	intergenic	not near genes	chrX	4835362	intergenic	not near genes	chrX_5_4830001	chrX_4830001	RAL-852
879	chrX	5096274	5096301	chrX	5103839	5103866	springer	4	7565	1.0	1.5	1.2	1.8	7592	chrX	5096274	intron,intron	CG15465 +,rg +	chrX	5100070	intron,intron	CG15465 +,rg +	chrX	5103866	intron,intron	CG15465 +,rg +	chrX_4_5100001	chrX_5100001	RAL-852
880	chrX	5338709	5338729	chrX	5339962	5339982	jockey	5	1251	0.5	0.0	0.2	4.2	1273	chrX	5338709	intergenic	not near genes	chrX	5339346	intergenic	not near genes	chrX	5339982	intergenic	SK +	chrX_5_5335001	chrX_5335001	RAL-852
881	chrX	5884166	5884184	chrX	5884407	5884424	pogo	4	240	2.5	0.5	1.5	1.6	258	chrX	5884166	intron	CR45668 -	chrX	5884295	intron	CR45668 -	chrX	5884424	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-852
884	chrX	6171585	6171607	chrX	6179016	6179040	Quasimodo	4	7432	1.5	0.5	1.0	2.0	7455	chrX	6171585	intron	Ca-alpha1T -	chrX	6175312	intron	Ca-alpha1T -	chrX	6179040	intron	Ca-alpha1T -	chrX_4_6175001	chrX_6175001	RAL-852
885	chrX	6392871	6392899	chrX	6397636	6397664	Doc	4	4764	2.5	0.0	1.2	1.8	4793	chrX	6392871	intergenic	not near genes	chrX	6395268	intergenic	not near genes	chrX	6397664	intergenic	not near genes	chrX_4_6395001	chrX_6395001	RAL-852
886	chrX	6562820	6562849	chrX	6571301	6571331	Tirant	8	8482	2.5	0.5	1.5	3.2	8511	chrX	6562820	intron	CG34417 +	chrX	6567076	intron	CG34417 +	chrX	6571331	intron	CG34417 +	chrX_8_6565001	chrX_6565001	RAL-852
887	chrX	7023599	7023627	chrX	7030989	7031017	Tabor	7	7390	2.5	1.0	1.8	2.5	7418	chrX	7023599	intron	CG12541 -	chrX	7027308	intron	CG12541 -	chrX	7031017	intron	CG12541 -	chrX_7_7025001	chrX_7025001	RAL-852
890	chrX	7125252	7125275	chrX	7134410	7134434	roo	5	9158	1.0	0.0	0.5	3.3	9182	chrX	7125252	intergenic	not near genes	chrX	7129843	intergenic	not near genes	chrX	7134434	intergenic	not near genes	chrX_5_7125001	chrX_7125001	RAL-852
891	chrX	7702904	7702924	chrX	7703343	7703360	jockey	5	438	1.5	1.0	1.2	2.3	456	chrX	7702904	intron	CHES-1-like -	chrX	7703132	intron	CHES-1-like -	chrX	7703360	intron	CHES-1-like -	chrX_5_7700001	chrX_7700001	RAL-852
899	chrX	8922326	8922362	chrX	8922760	8922796	jockey	5	434	1.0	1.0	1.0	2.5	470	chrX	8922326	intron	rdgA +	chrX	8922561	intron	rdgA +	chrX	8922796	intron	rdgA +	chrX_5_8920001	chrX_8920001	RAL-852
901	chrX	9508132	9508166	chrX	9509650	9509682	jockey	5	1517	2.0	1.0	1.5	2.0	1550	chrX	9508132	intron	CG32700 -	chrX	9508907	intron	CG32700 -	chrX	9509682	intron	CG32700 -	chrX_5_9505001	chrX_9505001	RAL-852
902	chrX	9575801	9575812	chrX	9576120	9576135	mdg3	5	321	1.5	3.0	2.2	1.6	334	chrX	9575801	intron,exon	CG32699 -,CG42395 -	chrX	9575968	intron,intron	CG32699 -,CG42395 -	chrX	9576135	intron,5` UTR	CG32699 -,CG42395 -	chrX_5_9575001	chrX_9575001	RAL-852
910	chrX	10138222	10138240	chrX	10145725	10145744	412	4	7504	1.0	1.5	1.2	1.8	7522	chrX	10138222	intron,intron	RhoU +,CR44894 -	chrX	10141983	intron,intron	RhoU +,CR44894 -	chrX	10145744	intron,intron	RhoU +,CR44894 -	chrX_4_10140001	chrX_10140001	RAL-852
917	chrX	10550857	10550886	chrX	10552324	10552353	hobo	4	1467	1.5	0.0	0.8	2.2	1496	chrX	10550857	intron	spri -	chrX	10551605	intron	spri -	chrX	10552353	intron	spri -	chrX_4_10550001	chrX_10550001	RAL-852
918	chrX	10686050	10686081	chrX	10691187	10691218	roo	5	5137	0.5	1.5	1.0	2.5	5168	chrX	10686050	intron	X11Lbeta +	chrX	10688634	intron	X11Lbeta +	chrX	10691218	intron	X11Lbeta +	chrX_5_10685001	chrX_10685001	RAL-852
922	chrX	11268568	11268589	chrX	11270061	11270082	hopper2	4	1493	1.5	2.0	1.8	1.4	1514	chrX	11268568	intron	CG44422 -	chrX	11269325	intron	CG44422 -	chrX	11270082	intron	CG44422 -	chrX_4_11265001	chrX_11265001	RAL-852
930	chrX	14636459	14636484	chrX	14641900	14641925	I-element	6	5440	2.0	0.0	1.0	3.0	5466	chrX	14636459	intron	NetA -	chrX	14639192	intron	NetA -	chrX	14641925	intron	NetA -	chrX_6_14635001	chrX_14635001	RAL-852
932	chrX	14778035	14778054	chrX	14782831	14782851	Doc	4	4797	1.0	4.0	2.5	1.1	4816	chrX	14778035	intergenic	CG5347 +	chrX	14780443	intergenic	not near genes	chrX	14782851	intergenic	Ag5r2 -	chrX_4_14780001	chrX_14780001	RAL-852
941	chrX	16492660	16492676	chrX	16498237	16498253	mdg3	5	5577	1.0	1.5	1.2	2.3	5593	chrX	16492660	intron	para -	chrX	16495456	intron	para -	chrX	16498253	intron	para -	chrX_5_16495001	chrX_16495001	RAL-852
947	chrX	18429509	18429519	chrX	18434820	18434830	Transpac	5	5311	0.0	3.5	1.8	1.8	5321	chrX	18429509	intergenic	not near genes	chrX	18432170	intergenic	not near genes	chrX	18434830	intergenic	not near genes	chrX_5_18430001	chrX_18430001	RAL-852
949	chrX	18957078	18957103	chrX	18965741	18965766	roo	5	8663	0.0	1.5	0.8	2.8	8688	chrX	18957078	intron	CG43759 +	chrX	18961422	intron	CG43759 +	chrX	18965766	intron	CG43759 +	chrX_5_18960001	chrX_18960001	RAL-852
951	chrX	19136553	19136583	chrX	19143473	19143501	412	5	6919	0.0	0.5	0.2	4.2	6948	chrX	19136553	intergenic	not near genes	chrX	19140027	intergenic	not near genes	chrX	19143501	3` UTR	RhoGAP18B -	chrX_5_19140001	chrX_19140001	RAL-852
954	chrX	19356990	19357016	chrX	19358431	19358457	NOF	8	1441	2.5	1.5	2.0	2.7	1467	chrX	19356990	intron	kek5 +	chrX	19357724	intron	kek5 +	chrX	19358457	intron	kek5 +	chrX_8_19355001	chrX_19355001	RAL-852
955	chrX	19380177	19380182	chrX	19380418	19380423	pogo	4	241	0.5	2.0	1.2	1.8	246	chrX	19380177	intron	kek5 +	chrX	19380300	intron	kek5 +	chrX	19380423	intron	kek5 +	chrX_4_19380001	chrX_19380001	RAL-852
959	chrX	19710074	19710103	chrX	19711860	19711885	S-element	8	1785	1.0	1.5	1.2	3.6	1811	chrX	19710074	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711885	intron	meso18E -	chrX_8_19710001	chrX_19710001	RAL-852
969	chrX	20836734	20836751	chrX	20844332	20844353	roo	6	7601	0.5	0.5	0.5	4.0	7619	chrX	20836734	intron	shakB -	chrX	20840544	intron	shakB -	chrX	20844353	intron	shakB -	chrX_6_20840001	chrX_20840001	RAL-852
970	chrX	20940717	20940746	chrX	20942186	20942215	hobo	4	1469	1.5	0.0	0.8	2.2	1498	chrX	20940717	intergenic	not near genes	chrX	20941466	intergenic	not near genes	chrX	20942215	intergenic	not near genes	chrX_4_20940001	chrX_20940001	RAL-852
971	chrX	21458694	21458719	chrX	21464130	21464155	Ivk	4	5436	0.0	0.5	0.2	3.3	5461	chrX	21458694	intergenic	not near genes	chrX	21461424	intergenic	not near genes	chrX	21464155	intergenic	not near genes	chrX_4_21460001	chrX_21460001	RAL-852
972	chrX	21474404	21474434	chrX	21474769	21474800	1731	6	366	1.5	1.0	1.2	2.7	396	chrX	21474404	intergenic	not near genes	chrX	21474602	intergenic	not near genes	chrX	21474800	intergenic	not near genes	chrX_6_21470001	chrX_21470001	RAL-852
978	chrX	22697495	22697515	chrX	22701792	22701812	Juan	7	4297	1.0	2.5	1.8	2.5	4317	chrX	22697495	intron	CR44997 +	chrX	22699654	intron	CR44997 +	chrX	22701812	intron	CR44997 +	chrX_7_22695001	chrX_22695001	RAL-852
979	chrX	22771511	22771537	chrX	22774801	22774828	297	4	3290	1.0	1.0	1.0	2.0	3317	chrX	22771511	intron	CR44997 +	chrX	22773170	intron	CR44997 +	chrX	22774828	intron	CR44997 +	chrX_4_22770001	chrX_22770001	RAL-852
981	chrX	22967391	22967407	chrX	23154542	23154558	diver	4	187151	0.5	3.0	1.8	1.4	187167	chrX	22967391	intergenic	not near genes	chrX	23060974	intergenic	not near genes	chrX	23154558	intergenic	not near genes	chrX_4_23060001	chrX_23060001	RAL-852