SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47462 47485 chr2L 52564 52590 jockey 7 5104 4.5 1.5 3.0 1.8 5128 chr2L 47462 intron Cda5 - chr2L 50026 intron Cda5 - chr2L 52590 intron Cda5 - chr2L_7_50001 chr2L_50001 RAL-852 2 chr2L 62029 62046 chr2L 62286 62303 5 257 14.0 11.0 12.5 0.4 274 chr2L 62029 intron Cda5 - chr2L 62166 intron Cda5 - chr2L 62303 intron Cda5 - chr2L_5_60001 chr2L_60001 RAL-852 3 chr2L 79836 79860 chr2L 80180 80204 9 343 1.0 5.0 3.0 2.2 368 chr2L 79836 intergenic not near genes chr2L 80020 intergenic not near genes chr2L 80204 intergenic not near genes chr2L_9_80001 chr2L_80001 RAL-852 4 chr2L 89730 89745 chr2L 89807 89821 4 76 2.5 2.5 2.5 1.1 91 chr2L 89730 intergenic not near genes chr2L 89776 intergenic not near genes chr2L 89821 intergenic not near genes chr2L_4_85001 chr2L_85001 RAL-852 5 chr2L 297691 297704 chr2L 297791 297804 4 99 0.5 0.5 0.5 2.7 113 chr2L 297691 intergenic Pi3K21B +,Hop + chr2L 297748 intergenic Pi3K21B +,Hop + chr2L 297804 intergenic Pi3K21B +,Hop + chr2L_4_295001 chr2L_295001 RAL-852 6 chr2L 467360 467489 chr2L 467459 467578 7 92 2.0 2.0 2.0 2.3 218 chr2L 467360 intron CG4297 - chr2L 467469 intron CG4297 - chr2L 467578 intron CG4297 - chr2L_7_465001 chr2L_465001 RAL-852 7 chr2L 686922 686950 chr2L 695962 695990 roo 4 9040 0.5 1.5 1.0 2.0 9068 chr2L 686922 intron ds - chr2L 691456 intron ds - chr2L 695990 intron ds - chr2L_4_690001 chr2L_690001 RAL-852 8 chr2L 764554 764576 chr2L 764653 764676 5 100 1.0 0.5 0.8 2.8 122 chr2L 764554 intergenic not near genes chr2L 764615 intergenic not near genes chr2L 764676 intergenic not near genes chr2L_5_760001 chr2L_760001 RAL-852 9 chr2L 922473 922490 chr2L 922554 922571 4 81 2.0 2.0 2.0 1.3 98 chr2L 922473 intergenic CG4341 + chr2L 922522 intergenic CG4341 + chr2L 922571 intergenic CG4341 + chr2L_4_920001 chr2L_920001 RAL-852 10 chr2L 976880 976913 chr2L 984516 984549 roo 6 7636 0.0 2.5 1.2 2.7 7669 chr2L 976880 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984549 intergenic not near genes chr2L_6_980001 chr2L_980001 RAL-852 11 chr2L 1458253 1458262 chr2L 1458330 1458338 5 77 3.5 4.0 3.8 1.0 85 chr2L 1458253 intergenic not near genes chr2L 1458296 intergenic not near genes chr2L 1458338 intergenic not near genes chr2L_5_1455001 chr2L_1455001 RAL-852 12 chr2L 1721825 1721846 chr2L 1721909 1721930 7 84 0.0 0.5 0.2 5.8 105 chr2L 1721825 intron Rim2 - chr2L 1721878 intron Rim2 - chr2L 1721930 intron Rim2 - chr2L_7_1720001 chr2L_1720001 RAL-852 13 chr2L 2125516 2125543 chr2L 2125858 2125885 4 342 2.0 17.5 9.8 0.4 369 chr2L 2125516 intergenic not near genes chr2L 2125700 intergenic not near genes chr2L 2125885 intergenic not near genes chr2L_4_2125001 chr2L_2125001 RAL-852 14 chr2L 2303505 2303527 chr2L 2303588 2303610 6 82 1.5 1.5 1.5 2.4 105 chr2L 2303505 intergenic not near genes chr2L 2303558 intergenic not near genes chr2L 2303610 intergenic not near genes chr2L_6_2300001 chr2L_2300001 RAL-852 15 chr2L 2667631 2667644 chr2L 2667710 2667721 5 78 3.0 1.0 2.0 1.7 90 chr2L 2667631 intergenic not near genes chr2L 2667676 intergenic not near genes chr2L 2667721 intergenic not near genes chr2L_5_2665001 chr2L_2665001 RAL-852 16 chr2L 2713518 2713549 chr2L 2713616 2713648 8 98 3.5 3.5 3.5 1.8 130 chr2L 2713518 intron CG31690 + chr2L 2713583 intron CG31690 + chr2L 2713648 intron CG31690 + chr2L_8_2710001 chr2L_2710001 RAL-852 17 chr2L 2723119 2723145 chr2L 2723196 2723223 6 78 1.5 2.5 2.0 2.0 104 chr2L 2723119 intergenic not near genes chr2L 2723171 intergenic not near genes chr2L 2723223 intergenic not near genes chr2L_6_2720001 chr2L_2720001 RAL-852 18 chr2L 3078513 3078533 chr2L 3078801 3078821 8 288 2.0 3.5 2.8 2.1 308 chr2L 3078513 intron toc - chr2L 3078667 intron toc - chr2L 3078821 intron toc - chr2L_8_3075001 chr2L_3075001 RAL-852 19 chr2L 3108881 3108898 chr2L 3108958 3108975 4 77 0.0 0.5 0.2 3.3 94 chr2L 3108881 intron toc - chr2L 3108928 intron toc - chr2L 3108975 intron toc - chr2L_4_3105001 chr2L_3105001 RAL-852 20 chr2L 3147274 3147301 chr2L 3147350 3147377 7 77 3.0 1.0 2.0 2.3 103 chr2L 3147274 3` UTR Mad - chr2L 3147326 3` UTR Mad - chr2L 3147377 3` UTR Mad - chr2L_7_3145001 chr2L_3145001 RAL-852 21 chr2L 3291240 3291265 chr2L 3291320 3291345 6 80 0.0 1.5 0.8 3.3 105 chr2L 3291240 intergenic CG9664 - chr2L 3291292 3` UTR CG9664 - chr2L 3291345 3` UTR CG9664 - chr2L_6_3290001 chr2L_3290001 RAL-852 22 chr2L 3312081 3312103 chr2L 3312186 3312208 4 105 0.0 0.0 0.0 4.0 127 chr2L 3312081 intron CG3277 + chr2L 3312144 intron CG3277 + chr2L 3312208 intron CG3277 + chr2L_4_3310001 chr2L_3310001 RAL-852 23 chr2L 3575430 3575449 chr2L 3575543 3575562 7 112 1.5 2.0 1.8 2.5 132 chr2L 3575430 5` UTR CR43822 + chr2L 3575496 5` UTR CR43822 + chr2L 3575562 5` UTR CR43822 + chr2L_7_3575001 chr2L_3575001 RAL-852 24 chr2L 3686029 3686048 chr2L 3686117 3686136 7 88 0.0 1.5 0.8 3.9 107 chr2L 3686029 intron CG34340 + chr2L 3686082 intron CG34340 + chr2L 3686136 intron CG34340 + chr2L_7_3685001 chr2L_3685001 RAL-852 25 chr2L 4066040 4066062 chr2L 4068864 4068887 Juan 4 2824 1.0 0.5 0.8 2.2 2847 chr2L 4066040 intron ed + chr2L 4067464 intron ed + chr2L 4068887 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-852 26 chr2L 4125247 4125275 chr2L 4125352 4125380 6 105 2.0 0.0 1.0 3.0 133 chr2L 4125247 intergenic not near genes chr2L 4125314 intergenic not near genes chr2L 4125380 intergenic not near genes chr2L_6_4125001 chr2L_4125001 RAL-852 27 chr2L 4150630 4150656 chr2L 4150710 4150735 6 80 0.0 0.0 0.0 6.0 105 chr2L 4150630 exon CG2955 + chr2L 4150682 exon CG2955 + chr2L 4150735 exon CG2955 + chr2L_6_4150001 chr2L_4150001 RAL-852 28 chr2L 4160507 4160531 chr2L 4160918 4160942 5 410 1.0 0.5 0.8 2.8 435 chr2L 4160507 intergenic not near genes chr2L 4160724 intergenic not near genes chr2L 4160942 intergenic not near genes chr2L_5_4160001 chr2L_4160001 RAL-852 29 chr2L 4181295 4181302 chr2L 4183927 4183930 Burdock 5 2630 3.5 5.0 4.2 1.0 2635 chr2L 4181295 intergenic not near genes chr2L 4182612 intergenic not near genes chr2L 4183930 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-852 30 chr2L 4184500 4184505 chr2L 4184819 4184824 6 319 0.0 2.5 1.2 2.7 324 chr2L 4184500 intergenic not near genes chr2L 4184662 intergenic not near genes chr2L 4184824 intergenic not near genes chr2L_6_4180001 chr2L_4180001 RAL-852 31 chr2L 4575117 4575138 chr2L 4575197 4575218 6 80 1.0 3.0 2.0 2.0 101 chr2L 4575117 intron dp - chr2L 4575168 intron dp - chr2L 4575218 intron dp - chr2L_6_4575001 chr2L_4575001 RAL-852 32 chr2L 4601702 4601733 chr2L 4609143 4609174 mdg1 7 7441 2.0 3.5 2.8 1.8 7472 chr2L 4601702 intron dp - chr2L 4605438 intron dp - chr2L 4609174 intron dp - chr2L_7_4605001 chr2L_4605001 RAL-852 33 chr2L 4869730 4869754 chr2L 4870240 4870264 5 510 1.5 0.0 0.8 2.8 534 chr2L 4869730 intron pog + chr2L 4869997 intron pog + chr2L 4870264 intron pog + chr2L_5_4865001 chr2L_4865001 RAL-852 34 chr2L 4991626 4991645 chr2L 4991702 4991720 4 75 4.0 1.0 2.5 1.1 94 chr2L 4991626 3` UTR CG34126 + chr2L 4991673 3` UTR CG34126 + chr2L 4991720 3` UTR CG34126 + chr2L_4_4990001 chr2L_4990001 RAL-852 35 chr2L 5206815 5206837 chr2L 5209761 5209782 4 2945 8.5 9.0 8.8 0.4 2967 chr2L 5206815 3` UTR Msp300 + chr2L 5208298 exon Cyp28d2 + chr2L 5209782 intergenic Cyp28d2 + chr2L_4_5205001 chr2L_5205001 RAL-852 36 chr2L 5242936 5242936 chr2L 16217660 16217661 6 10974724 8.5 7.0 7.8 0.7 10974725 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217661 intergenic not near genes chr2L_6_10730001 chr2L_10730001 RAL-852 37 chr2L 5248799 5248824 chr2L 5248933 5248958 4 134 2.5 0.0 1.2 1.8 159 chr2L 5248799 intron tkv - chr2L 5248878 intron tkv - chr2L 5248958 intron tkv - chr2L_4_5245001 chr2L_5245001 RAL-852 38 chr2L 5433845 5433876 chr2L 5433925 5433956 4 80 0.0 0.5 0.2 3.3 111 chr2L 5433845 3` UTR CR43715 - chr2L 5433900 3` UTR CR43715 - chr2L 5433956 3` UTR CR43715 - chr2L_4_5430001 chr2L_5430001 RAL-852 39 chr2L 5672171 5672190 chr2L 5672252 5672271 4 81 0.5 1.0 0.8 2.2 100 chr2L 5672171 intergenic not near genes chr2L 5672221 intergenic not near genes chr2L 5672271 intergenic not near genes chr2L_4_5670001 chr2L_5670001 RAL-852 40 chr2L 5878757 5878785 chr2L 5878833 5878861 8 76 0.5 2.0 1.2 3.6 104 chr2L 5878757 intron rau - chr2L 5878809 intron rau - chr2L 5878861 intron rau - chr2L_8_5875001 chr2L_5875001 RAL-852 41 chr2L 5887608 5887620 chr2L 5887689 5887701 4 81 2.0 1.0 1.5 1.6 93 chr2L 5887608 3` UTR CR44577 - chr2L 5887654 3` UTR CR44577 - chr2L 5887701 3` UTR CR44577 - chr2L_4_5885001 chr2L_5885001 RAL-852 42 chr2L 5962275 5962291 chr2L 5962351 5962367 5 76 2.0 1.0 1.5 2.0 92 chr2L 5962275 intergenic not near genes chr2L 5962321 intergenic not near genes chr2L 5962367 intergenic not near genes chr2L_5_5960001 chr2L_5960001 RAL-852 43 chr2L 5993331 5993357 chr2L 5993420 5993448 6 91 2.0 1.5 1.8 2.1 117 chr2L 5993331 exon lid - chr2L 5993390 intron lid - chr2L 5993448 intron lid - chr2L_6_5990001 chr2L_5990001 RAL-852 44 chr2L 6001751 6001778 chr2L 6001828 6001854 4 77 1.0 0.5 0.8 2.2 103 chr2L 6001751 3` UTR Tsp26A + chr2L 6001802 3` UTR Tsp26A + chr2L 6001854 3` UTR Tsp26A + chr2L_4_6000001 chr2L_6000001 RAL-852 45 chr2L 6025558 6025581 chr2L 6025645 6025668 7 87 2.5 2.5 2.5 2.0 110 chr2L 6025558 intergenic CG9109 - chr2L 6025613 intergenic CG9109 - chr2L 6025668 intergenic CG9109 - chr2L_7_6025001 chr2L_6025001 RAL-852 46 chr2L 6363149 6363169 chr2L 6366071 6366091 Burdock 4 2921 2.5 0.0 1.2 1.8 2942 chr2L 6363149 intergenic not near genes chr2L 6364620 intergenic not near genes chr2L 6366091 intergenic not near genes chr2L_4_6360001 chr2L_6360001 RAL-852 47 chr2L 6470664 6470697 chr2L 6470757 6470787 6 92 2.0 0.0 1.0 3.0 123 chr2L 6470664 intron mmy - chr2L 6470726 intron mmy - chr2L 6470787 intron mmy - chr2L_6_6470001 chr2L_6470001 RAL-852 48 chr2L 6626885 6626911 chr2L 6626970 6626995 5 85 0.0 1.5 0.8 2.8 110 chr2L 6626885 intron Oatp26F - chr2L 6626940 intron Oatp26F - chr2L 6626995 intron Oatp26F - chr2L_5_6625001 chr2L_6625001 RAL-852 49 chr2L 6969279 6969306 chr2L 6969359 6969386 8 80 1.5 1.0 1.2 3.6 107 chr2L 6969279 3` UTR snRNP-U1-70K - chr2L 6969332 3` UTR snRNP-U1-70K - chr2L 6969386 3` UTR snRNP-U1-70K - chr2L_8_6965001 chr2L_6965001 RAL-852 50 chr2L 7023221 7023240 chr2L 7023408 7023427 11 187 1.5 3.0 2.2 3.4 206 chr2L 7023221 intron ade3 - chr2L 7023324 intron ade3 - chr2L 7023427 intron ade3 - chr2L_11_7020001 chr2L_7020001 RAL-852 51 chr2L 7044528 7044545 chr2L 7044644 7044661 4 116 1.5 0.0 0.8 2.2 133 chr2L 7044528 intron milt + chr2L 7044594 intron milt + chr2L 7044661 intron milt + chr2L_4_7040001 chr2L_7040001 RAL-852 52 chr2L 7675243 7675263 chr2L 7675327 7675347 4 84 1.0 1.5 1.2 1.8 104 chr2L 7675243 intron Myo28B1 + chr2L 7675295 intron Myo28B1 + chr2L 7675347 intron Myo28B1 + chr2L_4_7675001 chr2L_7675001 RAL-852 53 chr2L 7922743 7922774 chr2L 7922824 7922855 4 81 0.5 1.5 1.0 2.0 112 chr2L 7922743 intron Snoo - chr2L 7922799 intron Snoo - chr2L 7922855 intron Snoo - chr2L_4_7920001 chr2L_7920001 RAL-852 54 chr2L 8044104 8044120 chr2L 8044183 8044199 4 79 0.5 0.5 0.5 2.7 95 chr2L 8044104 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044199 intron CG7466 + chr2L_4_8040001 chr2L_8040001 RAL-852 55 chr2L 8184919 8184951 chr2L 8185009 8185042 8 91 2.0 2.5 2.2 2.5 123 chr2L 8184919 intron Piezo + chr2L 8184980 intron Piezo + chr2L 8185042 intron Piezo + chr2L_8_8180001 chr2L_8180001 RAL-852 56 chr2L 8244731 8244746 chr2L 8244853 8244868 5 122 2.0 4.5 3.2 1.2 137 chr2L 8244731 intron CG8086 - chr2L 8244800 intron CG8086 - chr2L 8244868 intron CG8086 - chr2L_5_8240001 chr2L_8240001 RAL-852 57 chr2L 8452424 8452451 chr2L 8461595 8461622 roo 6 9171 1.0 1.5 1.2 2.7 9198 chr2L 8452424 intron fu12 - chr2L 8457023 intron fu12 - chr2L 8461622 intron fu12 - chr2L_6_8455001 chr2L_8455001 RAL-852 58 chr2L 8502659 8502671 chr2L 8502743 8502755 5 84 3.5 1.0 2.2 1.6 96 chr2L 8502659 intron Dh31 - chr2L 8502707 intron Dh31 - chr2L 8502755 intron Dh31 - chr2L_5_8500001 chr2L_8500001 RAL-852 59 chr2L 8538165 8538178 chr2L 8538241 8538254 4 76 1.5 0.0 0.8 2.2 89 chr2L 8538165 intron CG17834 + chr2L 8538210 intron CG17834 + chr2L 8538254 intron CG17834 + chr2L_4_8535001 chr2L_8535001 RAL-852 60 chr2L 8612819 8612843 chr2L 8613043 8613068 7 224 3.0 3.5 3.2 1.7 249 chr2L 8612819 intron Sema-1a + chr2L 8612944 intron Sema-1a + chr2L 8613068 intron Sema-1a + chr2L_7_8610001 chr2L_8610001 RAL-852 61 chr2L 8676186 8676212 chr2L 8676383 8676409 5 197 3.0 1.0 2.0 1.7 223 chr2L 8676186 exon Glt + chr2L 8676298 exon Glt + chr2L 8676409 exon Glt + chr2L_5_8675001 chr2L_8675001 RAL-852 62 chr2L 8695838 8695850 chr2L 8695960 8695972 4 122 1.5 1.0 1.2 1.8 134 chr2L 8695838 intron Hnf4 - chr2L 8695905 intron Hnf4 - chr2L 8695972 intron Hnf4 - chr2L_4_8695001 chr2L_8695001 RAL-852 63 chr2L 8795020 8795034 chr2L 8795107 8795123 5 89 4.0 1.5 2.8 1.3 103 chr2L 8795020 intergenic not near genes chr2L 8795072 intergenic not near genes chr2L 8795123 intergenic not near genes chr2L_5_8795001 chr2L_8795001 RAL-852 64 chr2L 8993217 8993239 chr2L 8993318 8993340 5 101 17.0 14.5 15.8 0.3 123 chr2L 8993217 exon CG9555 + chr2L 8993278 exon CG9555 + chr2L 8993340 3` UTR CG9555 + chr2L_5_8990001 chr2L_8990001 RAL-852 65 chr2L 9084336 9084340 chr2L 16217660 16217660 14 7133321 6.5 7.0 6.8 1.8 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_12650001 chr2L_12650001 RAL-852 66 chr2L 9092016 9092034 chr2L 9092106 9092126 5 91 0.0 1.0 0.5 3.3 110 chr2L 9092016 intergenic not near genes chr2L 9092071 intergenic not near genes chr2L 9092126 intergenic not near genes chr2L_5_9090001 chr2L_9090001 RAL-852 67 chr2L 9217970 9217993 chr2L 9222757 9222779 Doc 7 4787 1.0 2.0 1.5 2.8 4809 chr2L 9217970 intron tai + chr2L 9220374 intron tai + chr2L 9222779 intron tai + chr2L_7_9220001 chr2L_9220001 RAL-852 68 chr2L 9264342 9264382 chr2L 9264442 9264481 4 100 2.0 2.0 2.0 1.3 139 chr2L 9264342 intron Ggamma30A + chr2L 9264412 intron Ggamma30A + chr2L 9264481 intron Ggamma30A + chr2L_4_9260001 chr2L_9260001 RAL-852 69 chr2L 9474789 9474800 chr2L 9474883 9474894 4 94 1.0 1.0 1.0 2.0 105 chr2L 9474789 intergenic not near genes chr2L 9474842 intergenic not near genes chr2L 9474894 intergenic not near genes chr2L_4_9470001 chr2L_9470001 RAL-852 70 chr2L 9509825 9509841 chr2L 9509906 9509922 5 81 0.0 7.5 3.8 1.0 97 chr2L 9509825 intron CG33298 + chr2L 9509874 intron CG33298 + chr2L 9509922 intron CG33298 + chr2L_5_9505001 chr2L_9505001 RAL-852 71 chr2L 9657188 9657202 chr2L 9657268 9657283 4 79 2.5 2.0 2.2 1.2 95 chr2L 9657188 exon CG33299 + chr2L 9657236 3` UTR CG33299 + chr2L 9657283 3` UTR CG33299 + chr2L_4_9655001 chr2L_9655001 RAL-852 72 chr2L 9986361 9986384 chr2L 9986456 9986479 5 95 1.5 2.5 2.0 1.7 118 chr2L 9986361 intron bib + chr2L 9986420 intron bib + chr2L 9986479 intron bib + chr2L_5_9985001 chr2L_9985001 RAL-852 73 chr2L 10095633 10095656 chr2L 10095712 10095736 5 80 0.0 4.0 2.0 1.7 103 chr2L 10095633 intron CG44153 - chr2L 10095684 intron CG44153 - chr2L 10095736 intron CG44153 - chr2L_5_10095001 chr2L_10095001 RAL-852 74 chr2L 10123380 10123389 chr2L 10123712 10123721 6 332 2.5 3.5 3.0 1.5 341 chr2L 10123380 intron,intron CG44153 -,CG34109 + chr2L 10123550 intron,intron CG44153 -,CG34109 + chr2L 10123721 intron,intron CG44153 -,CG34109 + chr2L_6_10120001 chr2L_10120001 RAL-852 75 chr2L 10153210 10153218 chr2L 10153289 10153295 4 78 1.0 1.5 1.2 1.8 85 chr2L 10153210 intron,exon CG44153 -,CG4839 + chr2L 10153252 intron,intron CG44153 -,CG4839 + chr2L 10153295 intron,intron CG44153 -,CG4839 + chr2L_4_10150001 chr2L_10150001 RAL-852 76 chr2L 10574556 10574566 chr2L 10574875 10574885 4 320 1.5 1.0 1.2 1.8 329 chr2L 10574556 intron Trim9 + chr2L 10574720 intron Trim9 + chr2L 10574885 intron Trim9 + chr2L_4_10570001 chr2L_10570001 RAL-852 77 chr2L 10862840 10862876 chr2L 10864454 10864490 Rt1c 7 1614 0.0 2.5 1.2 3.2 1650 chr2L 10862840 3` UTR CR43807 - chr2L 10863665 intron CR43807 - chr2L 10864490 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-852 78 chr2L 10873056 10873081 chr2L 10873135 10873161 5 79 1.5 2.0 1.8 1.8 105 chr2L 10873056 intergenic not near genes chr2L 10873108 intergenic not near genes chr2L 10873161 intergenic not near genes chr2L_5_10870001 chr2L_10870001 RAL-852 79 chr2L 10946949 10946977 chr2L 10956164 10956191 roo 8 9215 2.5 3.0 2.8 2.1 9242 chr2L 10946949 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956191 intron dpr2 - chr2L_8_10950001 chr2L_10950001 RAL-852 80 chr2L 11563636 11563670 chr2L 11568840 11568874 copia 4 5204 1.0 2.0 1.5 1.6 5238 chr2L 11563636 intergenic not near genes chr2L 11566255 intergenic not near genes chr2L 11568874 intergenic not near genes chr2L_4_11565001 chr2L_11565001 RAL-852 81 chr2L 11723099 11723120 chr2L 11723180 11723201 5 80 2.0 2.0 2.0 1.7 102 chr2L 11723099 intergenic not near genes chr2L 11723150 intergenic not near genes chr2L 11723201 intergenic not near genes chr2L_5_11720001 chr2L_11720001 RAL-852 82 chr2L 12067329 12067359 chr2L 12074381 12074411 297 5 7052 1.0 0.5 0.8 2.8 7082 chr2L 12067329 intergenic not near genes chr2L 12070870 intergenic not near genes chr2L 12074411 intergenic not near genes chr2L_5_12070001 chr2L_12070001 RAL-852 83 chr2L 12305409 12305438 chr2L 12305497 12305526 8 88 1.5 1.5 1.5 3.2 117 chr2L 12305409 intron aret + chr2L 12305468 intron aret + chr2L 12305526 intron aret + chr2L_8_12305001 chr2L_12305001 RAL-852 84 chr2L 12445316 12445346 chr2L 12445408 12445438 6 92 1.0 1.0 1.0 3.0 122 chr2L 12445316 intron Oatp33Ea - chr2L 12445377 intron Oatp33Ea - chr2L 12445438 intron Oatp33Ea - chr2L_6_12445001 chr2L_12445001 RAL-852 85 chr2L 12487888 12487917 chr2L 12487969 12487997 6 81 3.0 4.0 3.5 1.3 109 chr2L 12487888 intron bun - chr2L 12487942 intron bun - chr2L 12487997 intron bun - chr2L_6_12485001 chr2L_12485001 RAL-852 86 chr2L 12751315 12751338 chr2L 12751398 12751421 5 83 1.0 3.0 2.0 1.7 106 chr2L 12751315 intergenic not near genes chr2L 12751368 intergenic not near genes chr2L 12751421 intergenic not near genes chr2L_5_12750001 chr2L_12750001 RAL-852 87 chr2L 12861699 12861728 chr2L 12863166 12863193 hobo 7 1467 0.5 1.0 0.8 3.9 1494 chr2L 12861699 intergenic not near genes chr2L 12862446 intergenic not near genes chr2L 12863193 intergenic not near genes chr2L_7_12860001 chr2L_12860001 RAL-852 88 chr2L 12894025 12894048 chr2L 12895492 12895515 hobo 4 1467 1.0 1.0 1.0 2.0 1490 chr2L 12894025 intergenic not near genes chr2L 12894770 intergenic not near genes chr2L 12895515 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-852 89 chr2L 12933859 12933866 chr2L 12941326 12941331 blood 4 7466 4.5 3.5 4.0 0.8 7472 chr2L 12933859 intergenic not near genes chr2L 12937595 intergenic not near genes chr2L 12941331 intergenic not near genes chr2L_4_12935001 chr2L_12935001 RAL-852 90 chr2L 13139454 13139489 chr2L 13139542 13139576 7 88 1.0 1.0 1.0 3.5 122 chr2L 13139454 intergenic not near genes chr2L 13139515 intergenic not near genes chr2L 13139576 intergenic not near genes chr2L_7_13135001 chr2L_13135001 RAL-852 91 chr2L 13152237 13152249 chr2L 13152315 13152327 8 77 2.0 1.0 1.5 3.2 90 chr2L 13152237 intergenic not near genes chr2L 13152282 intergenic not near genes chr2L 13152327 intergenic not near genes chr2L_8_13150001 chr2L_13150001 RAL-852 92 chr2L 13321897 13321932 chr2L 13321986 13322021 5 89 2.0 2.0 2.0 1.7 124 chr2L 13321897 intron CG43778 - chr2L 13321959 intron CG43778 - chr2L 13322021 intron CG43778 - chr2L_5_13320001 chr2L_13320001 RAL-852 93 chr2L 13405657 13405674 chr2L 13410454 13410471 Doc 8 4797 4.0 1.5 2.8 2.1 4814 chr2L 13405657 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410471 intron CG7110 + chr2L_8_13405001 chr2L_13405001 RAL-852 94 chr2L 13590966 13590990 chr2L 13591065 13591089 4 98 1.0 0.5 0.8 2.2 123 chr2L 13590966 intron kuz + chr2L 13591028 intron kuz + chr2L 13591089 intron kuz + chr2L_4_13590001 chr2L_13590001 RAL-852 95 chr2L 13715280 13715306 chr2L 13715407 13715433 8 125 0.5 2.5 1.5 3.2 153 chr2L 13715280 intron CG31814 - chr2L 13715356 intron CG31814 - chr2L 13715433 intron CG31814 - chr2L_8_13715001 chr2L_13715001 RAL-852 96 chr2L 13744267 13744291 chr2L 13744434 13744458 6 167 1.5 2.5 2.0 2.0 191 chr2L 13744267 intergenic not near genes chr2L 13744362 intergenic not near genes chr2L 13744458 intergenic not near genes chr2L_6_13740001 chr2L_13740001 RAL-852 97 chr2L 13761815 13761830 chr2L 13762925 13762941 Doc 4 1111 1.5 2.0 1.8 1.4 1126 chr2L 13761815 intron TM9SF4 + chr2L 13762378 intron TM9SF4 + chr2L 13762941 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-852 98 chr2L 13853098 13853105 chr2L 13862248 13862255 roo 4 9150 2.0 3.0 2.5 1.1 9157 chr2L 13853098 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862255 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-852 99 chr2L 13913592 13913600 chr2L 13913705 13913713 5 113 4.5 3.5 4.0 1.0 121 chr2L 13913592 intergenic not near genes chr2L 13913652 intergenic not near genes chr2L 13913713 intergenic not near genes chr2L_5_13910001 chr2L_13910001 RAL-852 100 chr2L 14078790 14078815 chr2L 14078875 14078901 5 86 1.0 2.5 1.8 1.8 111 chr2L 14078790 intron nAChRalpha5 + chr2L 14078846 intron nAChRalpha5 + chr2L 14078901 intron nAChRalpha5 + chr2L_5_14075001 chr2L_14075001 RAL-852 101 chr2L 14160694 14160719 chr2L 14160780 14160805 8 86 1.0 1.5 1.2 3.6 111 chr2L 14160694 intergenic CG17341 +,CG43332 - chr2L 14160750 intergenic CG17341 +,CG43332 - chr2L 14160805 intergenic CG17341 +,CG43332 - chr2L_8_14160001 chr2L_14160001 RAL-852 102 chr2L 14180067 14180089 chr2L 14180142 14180165 8 76 3.0 1.0 2.0 2.7 98 chr2L 14180067 intron CG43333 - chr2L 14180116 intron CG43333 - chr2L 14180165 intron CG43333 - chr2L_8_14180001 chr2L_14180001 RAL-852 103 chr2L 14271121 14271144 chr2L 14271202 14271225 7 81 2.5 0.0 1.2 3.2 104 chr2L 14271121 intron wb + chr2L 14271173 intron wb + chr2L 14271225 intron wb + chr2L_7_14270001 chr2L_14270001 RAL-852 104 chr2L 14333914 14333927 chr2L 14334014 14334027 5 100 0.5 1.5 1.0 2.5 113 chr2L 14333914 intergenic ms(2)34Fe +,CG33090 + chr2L 14333970 intergenic ms(2)34Fe +,CG33090 + chr2L 14334027 intergenic CG33090 +,ms(2)34Fe + chr2L_5_14330001 chr2L_14330001 RAL-852 105 chr2L 14369123 14369161 chr2L 14369239 14369277 8 116 1.0 1.5 1.2 3.6 154 chr2L 14369123 intergenic not near genes chr2L 14369200 intergenic not near genes chr2L 14369277 intergenic not near genes chr2L_8_14365001 chr2L_14365001 RAL-852 106 chr2L 14588383 14588418 chr2L 14588537 14588572 5 154 0.5 0.5 0.5 3.3 189 chr2L 14588383 intergenic CG42680 - chr2L 14588478 intergenic CG42680 - chr2L 14588572 intergenic CG42680 - chr2L_5_14585001 chr2L_14585001 RAL-852 107 chr2L 14642580 14642599 chr2L 14651743 14651762 roo 4 9163 1.0 1.0 1.0 2.0 9182 chr2L 14642580 intron osp - chr2L 14647171 intron osp - chr2L 14651762 intron osp - chr2L_4_14645001 chr2L_14645001 RAL-852 108 chr2L 14803878 14803911 chr2L 14809081 14809114 copia 6 5203 0.5 1.0 0.8 3.3 5236 chr2L 14803878 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809114 intergenic not near genes chr2L_6_14805001 chr2L_14805001 RAL-852 109 chr2L 15003546 15003566 chr2L 15003630 15003650 4 84 1.0 1.0 1.0 2.0 104 chr2L 15003546 intergenic not near genes chr2L 15003598 intergenic not near genes chr2L 15003650 intergenic not near genes chr2L_4_15000001 chr2L_15000001 RAL-852 110 chr2L 15078070 15078099 chr2L 15078158 15078187 4 88 0.0 0.5 0.2 3.3 117 chr2L 15078070 intron CG15270 + chr2L 15078128 intron CG15270 + chr2L 15078187 intron CG15270 + chr2L_4_15075001 chr2L_15075001 RAL-852 111 chr2L 15385021 15385041 chr2L 15385207 15385227 4 186 2.0 2.5 2.2 1.2 206 chr2L 15385021 intergenic not near genes chr2L 15385124 intergenic not near genes chr2L 15385227 intergenic not near genes chr2L_4_15385001 chr2L_15385001 RAL-852 112 chr2L 15446056 15446078 chr2L 15453525 15453547 blood 6 7469 2.5 0.0 1.2 2.7 7491 chr2L 15446056 intergenic not near genes chr2L 15449802 intergenic not near genes chr2L 15453547 intergenic not near genes chr2L_6_15445001 chr2L_15445001 RAL-852 113 chr2L 15500828 15500858 chr2L 15500904 15500932 4 76 0.5 0.5 0.5 2.7 104 chr2L 15500828 intron lace + chr2L 15500880 intron lace + chr2L 15500932 intron lace + chr2L_4_15500001 chr2L_15500001 RAL-852 114 chr2L 15510942 15510947 chr2L 15511036 15511041 4 94 2.5 1.5 2.0 1.3 99 chr2L 15510942 intergenic not near genes chr2L 15510992 intergenic not near genes chr2L 15511041 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-852 115 chr2L 15643893 15643911 chr2L 15645973 15645991 5 2081 8.0 19.0 13.5 0.3 2098 chr2L 15643893 intergenic CG4587 - chr2L 15644942 3` UTR CG4587 - chr2L 15645991 3` UTR CG4587 - chr2L_5_15640001 chr2L_15640001 RAL-852 116 chr2L 15906184 15906212 chr2L 15906269 15906301 4 88 0.0 1.0 0.5 2.7 117 chr2L 15906184 intron beat-Ib - chr2L 15906242 intron beat-Ib - chr2L 15906301 intron beat-Ib - chr2L_4_15905001 chr2L_15905001 RAL-852 117 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 11.5 7.0 9.2 1.0 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-852 118 chr2L 16141175 16141195 chr2L 16146382 16146402 copia 4 5206 1.0 1.0 1.0 2.0 5227 chr2L 16141175 intergenic not near genes chr2L 16143788 intergenic not near genes chr2L 16146402 intergenic not near genes chr2L_4_16140001 chr2L_16140001 RAL-852 119 chr2L 9084337 9084340 chr2L 16217660 16217660 14 7133320 6.5 7.0 6.8 1.8 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_12650001 chr2L_12650001 RAL-852 120 chr2L 16071770 16071771 chr2L 16217660 16217660 copia 8 145889 11.5 7.0 9.2 0.8 145890 chr2L 16071770 intron beat-Ia + chr2L 16144715 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_16140001 chr2L_16140001 RAL-852 121 chr2L 16217660 16217660 chr2L 18622718 18622719 6 2405059 8.0 11.0 9.5 0.6 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_6_17420001 chr2L_17420001 RAL-852 122 chr2L 16572209 16572242 chr2L 16572302 16572335 6 93 1.5 1.5 1.5 2.4 126 chr2L 16572209 intron CG42389 + chr2L 16572272 intron CG42389 + chr2L 16572335 intron CG42389 + chr2L_6_16570001 chr2L_16570001 RAL-852 123 chr2L 16694140 16694163 chr2L 16694222 16694249 4 84 2.5 4.0 3.2 1.0 109 chr2L 16694140 intron grp + chr2L 16694194 intron grp + chr2L 16694249 intron grp + chr2L_4_16690001 chr2L_16690001 RAL-852 124 chr2L 16715512 16715532 chr2L 16715592 16715611 8 80 2.5 0.5 1.5 3.2 99 chr2L 16715512 intron CG31808 - chr2L 16715562 intron CG31808 - chr2L 16715611 intron CG31808 - chr2L_8_16715001 chr2L_16715001 RAL-852 125 chr2L 17069255 17069275 chr2L 17069332 17069352 6 77 0.5 0.0 0.2 5.0 97 chr2L 17069255 intergenic not near genes chr2L 17069304 intergenic not near genes chr2L 17069352 intergenic not near genes chr2L_6_17065001 chr2L_17065001 RAL-852 126 chr2L 17158727 17158762 chr2L 17158829 17158864 8 101 2.0 1.0 1.5 3.2 137 chr2L 17158727 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158796 intron,intron CG34106 +,beat-IIIa + chr2L 17158864 intron,intron CG34106 +,beat-IIIa + chr2L_8_17155001 chr2L_17155001 RAL-852 127 chr2L 17260881 17260906 chr2L 17260964 17260989 4 83 0.0 0.0 0.0 4.0 108 chr2L 17260881 intergenic beat-IIIc - chr2L 17260935 intergenic beat-IIIc - chr2L 17260989 intergenic beat-IIIc - chr2L_4_17260001 chr2L_17260001 RAL-852 128 chr2L 17278556 17278582 chr2L 17278639 17278665 4 83 0.0 1.5 0.8 2.2 109 chr2L 17278556 intergenic not near genes chr2L 17278610 intergenic not near genes chr2L 17278665 intergenic not near genes chr2L_4_17275001 chr2L_17275001 RAL-852 129 chr2L 17461010 17461025 chr2L 17461119 17461134 7 108 1.5 0.5 1.0 3.5 124 chr2L 17461010 3` UTR BicD - chr2L 17461072 3` UTR BicD - chr2L 17461134 3` UTR BicD - chr2L_7_17460001 chr2L_17460001 RAL-852 130 chr2L 17503238 17503250 chr2L 17503315 17503327 4 77 2.5 3.0 2.8 1.1 89 chr2L 17503238 intron Dhc36C + chr2L 17503282 intron Dhc36C + chr2L 17503327 intron Dhc36C + chr2L_4_17500001 chr2L_17500001 RAL-852 131 chr2L 17867429 17867449 chr2L 17867715 17867735 6 286 1.0 2.5 1.8 2.1 306 chr2L 17867429 intron CadN2 - chr2L 17867582 intron CadN2 - chr2L 17867735 intron CadN2 - chr2L_6_17865001 chr2L_17865001 RAL-852 132 chr2L 17989997 17990025 chr2L 17990073 17990100 10 76 1.0 1.5 1.2 4.5 103 chr2L 17989997 intergenic Prosbeta5R2 + chr2L 17990048 intergenic Prosbeta5R2 + chr2L 17990100 intergenic Prosbeta5R2 + chr2L_10_17990001 chr2L_17990001 RAL-852 133 chr2L 18111249 18111262 chr2L 18111340 18111353 4 91 1.5 2.5 2.0 1.3 104 chr2L 18111249 intergenic not near genes chr2L 18111301 intergenic not near genes chr2L 18111353 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-852 134 chr2L 18143469 18143489 chr2L 18143549 18143569 7 79 1.0 1.5 1.2 3.2 100 chr2L 18143469 intron Socs36E - chr2L 18143519 intron Socs36E - chr2L 18143569 intron Socs36E - chr2L_7_18140001 chr2L_18140001 RAL-852 135 chr2L 18274052 18274070 chr2L 18274138 18274154 4 85 3.0 0.5 1.8 1.4 102 chr2L 18274052 intron CG42750 - chr2L 18274103 intron CG42750 - chr2L 18274154 intron CG42750 - chr2L_4_18270001 chr2L_18270001 RAL-852 136 chr2L 18291528 18291560 chr2L 18291626 18291658 6 97 1.0 0.0 0.5 4.0 130 chr2L 18291528 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291593 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291658 intergenic CR44693 +,CG43362 -,CR44696 - chr2L_6_18290001 chr2L_18290001 RAL-852 137 chr2L 16217660 16217660 chr2L 18622718 18622719 9 2405059 8.0 11.0 9.5 0.9 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_9_17420001 chr2L_17420001 RAL-852 138 chr2L 18816739 18816760 chr2L 18816870 18816890 5 131 3.0 1.0 2.0 1.7 151 chr2L 18816739 intergenic not near genes chr2L 18816814 intergenic not near genes chr2L 18816890 intergenic not near genes chr2L_5_18815001 chr2L_18815001 RAL-852 139 chr2L 18898410 18898423 chr2L 18898482 18898505 5 80 2.0 0.0 1.0 2.5 95 chr2L 18898410 intergenic not near genes chr2L 18898458 intergenic not near genes chr2L 18898505 intergenic not near genes chr2L_5_18895001 chr2L_18895001 RAL-852 140 chr2L 19228403 19228431 chr2L 19228609 19228637 5 205 1.5 1.0 1.2 2.3 234 chr2L 19228403 intergenic not near genes chr2L 19228520 intergenic not near genes chr2L 19228637 intergenic not near genes chr2L_5_19225001 chr2L_19225001 RAL-852 141 chr2L 19266175 19266200 chr2L 19266342 19266366 5 166 2.5 2.0 2.2 1.6 191 chr2L 19266175 intergenic not near genes chr2L 19266270 intergenic not near genes chr2L 19266366 intergenic not near genes chr2L_5_19265001 chr2L_19265001 RAL-852 142 chr2L 19271571 19271604 chr2L 19271668 19271701 6 97 3.0 1.5 2.2 1.9 130 chr2L 19271571 3` UTR CR44190 - chr2L 19271636 3` UTR CR44190 - chr2L 19271701 3` UTR CR44190 - chr2L_6_19270001 chr2L_19270001 RAL-852 143 chr2L 19357545 19357567 chr2L 19357635 19357657 6 90 2.5 2.0 2.2 1.9 112 chr2L 19357545 intron dnt - chr2L 19357601 intron dnt - chr2L 19357657 intron dnt - chr2L_6_19355001 chr2L_19355001 RAL-852 144 chr2L 19380518 19380527 chr2L 19380598 19380607 4 80 2.0 0.5 1.2 1.8 89 chr2L 19380518 intergenic CG17350 + chr2L 19380562 intergenic CG17350 + chr2L 19380607 intergenic CG17350 + chr2L_4_19380001 chr2L_19380001 RAL-852 145 chr2L 19411746 19411761 chr2L 19412066 19412081 4 320 0.0 4.0 2.0 1.3 335 chr2L 19411746 intron Pax - chr2L 19411914 intron Pax - chr2L 19412081 intron Pax - chr2L_4_19410001 chr2L_19410001 RAL-852 146 chr2L 19437521 19437528 chr2L 19437613 19437620 4 92 0.5 0.0 0.2 3.3 99 chr2L 19437521 intron CG10237 - chr2L 19437570 intron CG10237 - chr2L 19437620 intron CG10237 - chr2L_4_19435001 chr2L_19435001 RAL-852 147 chr2L 19453793 19453817 chr2L 19453907 19453931 5 114 1.0 0.5 0.8 2.8 138 chr2L 19453793 intergenic Top2 -,CG10026 + chr2L 19453862 intergenic Top2 -,CG10026 + chr2L 19453931 intergenic CG10026 +,Top2 - chr2L_5_19450001 chr2L_19450001 RAL-852 148 chr2L 19560003 19560039 chr2L 19560256 19560291 7 252 0.5 2.5 1.5 2.8 288 chr2L 19560003 exon Tep5 + chr2L 19560147 exon Tep5 + chr2L 19560291 intron Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-852 149 chr2L 19613844 19613865 chr2L 19613998 19614019 4 154 1.0 2.0 1.5 1.6 175 chr2L 19613844 intron Lar + chr2L 19613932 intron Lar + chr2L 19614019 intron Lar + chr2L_4_19610001 chr2L_19610001 RAL-852 150 chr2L 19652569 19652586 chr2L 19674005 19674022 opus 4 21436 2.0 2.0 2.0 1.3 21453 chr2L 19652569 intron Lar + chr2L 19663296 intron Lar + chr2L 19674022 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-852 151 chr2L 19703537 19703564 chr2L 19712673 19712693 roo 5 9135 2.0 1.0 1.5 2.0 9156 chr2L 19703537 intron Lar + chr2L 19708115 intron Lar + chr2L 19712693 intron Lar + chr2L_5_19705001 chr2L_19705001 RAL-852 152 chr2L 19737354 19737384 chr2L 19740820 19740853 1360 10 3468 1.0 0.0 0.5 6.7 3499 chr2L 19737354 intergenic Nf-YB + chr2L 19739104 intergenic not near genes chr2L 19740853 intergenic not near genes chr2L_10_19735001 chr2L_19735001 RAL-852 153 chr2L 19762808 19762834 chr2L 19763050 19763076 pogo 4 242 1.0 0.5 0.8 2.2 268 chr2L 19762808 5` UTR fbp - chr2L 19762942 intron fbp - chr2L 19763076 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-852 154 chr2L 19772346 19772367 chr2L 19772437 19772462 5 93 0.5 2.0 1.2 2.3 116 chr2L 19772346 intergenic not near genes chr2L 19772404 intergenic not near genes chr2L 19772462 intergenic not near genes chr2L_5_19770001 chr2L_19770001 RAL-852 155 chr2L 19823265 19823298 chr2L 19823346 19823386 5 87 1.5 0.0 0.8 2.8 121 chr2L 19823265 intron sick + chr2L 19823326 intron sick + chr2L 19823386 intron sick + chr2L_5_19820001 chr2L_19820001 RAL-852 156 chr2L 19911295 19911322 chr2L 19911383 19911410 6 88 0.5 3.0 1.8 2.1 115 chr2L 19911295 intron,3` UTR sick +,CR43097 - chr2L 19911352 intron,3` UTR sick +,CR43097 - chr2L 19911410 intron,3` UTR sick +,CR43097 - chr2L_6_19910001 chr2L_19910001 RAL-852 157 chr2L 20032670 20032702 chr2L 20032749 20032781 6 78 1.5 2.0 1.8 2.1 111 chr2L 20032670 intron sNPF + chr2L 20032726 intron sNPF + chr2L 20032781 intron sNPF + chr2L_6_20030001 chr2L_20030001 RAL-852 158 chr2L 20036539 20036550 chr2L 20036623 20036634 5 84 0.5 1.0 0.8 2.8 95 chr2L 20036539 intron sNPF + chr2L 20036586 intron sNPF + chr2L 20036634 intron sNPF + chr2L_5_20035001 chr2L_20035001 RAL-852 159 chr2L 20084857 20084887 chr2L 20084970 20085000 6 113 1.5 1.5 1.5 2.4 143 chr2L 20084857 intron,5` UTR neb +,fok - chr2L 20084928 intron,5` UTR neb +,fok - chr2L 20085000 intron,5` UTR neb +,fok - chr2L_6_20080001 chr2L_20080001 RAL-852 160 chr2L 20272115 20272142 chr2L 20282826 20282852 copia 7 10711 2.0 1.5 1.8 2.5 10737 chr2L 20272115 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282852 intergenic not near genes chr2L_7_20275001 chr2L_20275001 RAL-852 161 chr2L 20372241 20372245 chr2L 20372475 20372479 pogo 4 234 1.0 4.0 2.5 1.1 238 chr2L 20372241 intergenic Ugt37a1 - chr2L 20372360 intergenic Ugt37a1 - chr2L 20372479 exon Ugt37a1 - chr2L_4_20370001 chr2L_20370001 RAL-852 162 chr2L 20396807 20396828 chr2L 20396883 20396903 4 76 2.0 1.0 1.5 1.6 96 chr2L 20396807 intron CG10947 - chr2L 20396855 intron CG10947 - chr2L 20396903 intron CG10947 - chr2L_4_20395001 chr2L_20395001 RAL-852 163 chr2L 20576221 20576251 chr2L 20583689 20583719 blood 6 7468 1.5 1.0 1.2 2.7 7498 chr2L 20576221 intergenic not near genes chr2L 20579970 intergenic not near genes chr2L 20583719 3` UTR CR44909 - chr2L_6_20575001 chr2L_20575001 RAL-852 164 chr2L 20602726 20602745 chr2L 20602814 20602833 4 88 1.5 1.0 1.2 1.8 107 chr2L 20602726 intron CR44909 - chr2L 20602780 intron CR44909 - chr2L 20602833 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-852 165 chr2L 20668689 20668720 chr2L 20668765 20668795 4 76 1.5 3.5 2.5 1.1 106 chr2L 20668689 intron CG31678 - chr2L 20668742 intron CG31678 - chr2L 20668795 intron CG31678 - chr2L_4_20665001 chr2L_20665001 RAL-852 166 chr2L 20715158 20715178 chr2L 20715394 20715415 6 237 0.5 2.5 1.5 2.4 257 chr2L 20715158 intergenic not near genes chr2L 20715286 intergenic not near genes chr2L 20715415 intergenic not near genes chr2L_6_20715001 chr2L_20715001 RAL-852 167 chr2L 20817985 20818015 chr2L 20818063 20818093 7 78 3.0 1.0 2.0 2.3 108 chr2L 20817985 exon CheB38a - chr2L 20818039 intron CheB38a - chr2L 20818093 exon CheB38a - chr2L_7_20815001 chr2L_20815001 RAL-852 168 chr2L 20967082 20967103 chr2L 20967167 20967189 4 86 0.5 3.0 1.8 1.4 107 chr2L 20967082 3` UTR CG42238 - chr2L 20967136 3` UTR CG42238 - chr2L 20967189 3` UTR CG42238 - chr2L_4_20965001 chr2L_20965001 RAL-852 169 chr2L 21020276 21020311 chr2L 21023953 21023988 NOF 5 3677 2.0 2.0 2.0 1.7 3712 chr2L 21020276 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21023988 intron CG42238 - chr2L_5_21020001 chr2L_21020001 RAL-852 170 chr2L 21041138 21041166 chr2L 21049399 21049427 Tirant 4 8261 0.0 2.5 1.2 1.8 8289 chr2L 21041138 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049427 intron CG42238 - chr2L_4_21045001 chr2L_21045001 RAL-852 171 chr2L 21081635 21081655 chr2L 21081768 21081788 5 134 3.0 0.5 1.8 1.8 153 chr2L 21081635 exon CG33511 - chr2L 21081712 exon CG33511 - chr2L 21081788 exon CG33511 - chr2L_5_21080001 chr2L_21080001 RAL-852 172 chr2L 21085061 21085081 chr2L 21085386 21085406 5 325 2.5 1.5 2.0 1.7 345 chr2L 21085061 exon CG33509 - chr2L 21085234 exon CG33509 - chr2L 21085406 exon CG33509 - chr2L_5_21085001 chr2L_21085001 RAL-852 173 chr2L 21091815 21091831 chr2L 21091901 21091914 4 85 1.0 1.5 1.2 1.8 99 chr2L 21091815 intron CG14397 + chr2L 21091864 intron CG14397 + chr2L 21091914 intron CG14397 + chr2L_4_21090001 chr2L_21090001 RAL-852 174 chr2L 21294214 21294238 chr2L 21294355 21294377 4 140 4.0 1.5 2.8 1.1 163 chr2L 21294214 intron,intron Mio -,Gr39a + chr2L 21294296 intron,intron Mio -,Gr39a + chr2L 21294377 intron,intron Mio -,Gr39a + chr2L_4_21290001 chr2L_21290001 RAL-852 175 chr2L 21691829 21691857 chr2L 21698299 21698327 Burdock 6 6470 1.0 0.0 0.5 4.0 6498 chr2L 21691829 intron CG31619 + chr2L 21695078 intron CG31619 + chr2L 21698327 intron CG31619 + chr2L_6_21695001 chr2L_21695001 RAL-852 176 chr2L 21824136 21824154 chr2L 21824223 21824241 4 87 0.5 0.0 0.2 3.3 105 chr2L 21824136 intergenic not near genes chr2L 21824188 intergenic not near genes chr2L 21824241 intergenic not near genes chr2L_4_21820001 chr2L_21820001 RAL-852 177 chr2L 21981686 21981708 chr2L 21990851 21990869 roo 4 9164 1.5 1.0 1.2 1.8 9183 chr2L 21981686 exon CG2528 - chr2L 21986278 intron CG2528 - chr2L 21990869 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-852 178 chr2L 22239430 22239455 chr2L 22239510 22239536 4 81 1.0 3.5 2.2 1.2 106 chr2L 22239430 3` UTR CR43765 - chr2L 22239483 3` UTR CR43765 - chr2L 22239536 3` UTR CR43765 - chr2L_4_22235001 chr2L_22235001 RAL-852 179 chr2L 22548929 22548944 chr2L 22550154 22550169 1360 4 1225 0.0 4.0 2.0 1.3 1240 chr2L 22548929 intergenic CG17490 + chr2L 22549549 intergenic not near genes chr2L 22550169 intergenic CG17493 + chr2L_4_22545001 chr2L_22545001 RAL-852 180 chr2L 22558391 22558424 chr2L 22558702 22558735 12 311 2.0 0.5 1.2 5.5 344 chr2L 22558391 intergenic not near genes chr2L 22558563 intergenic not near genes chr2L 22558735 intergenic not near genes chr2L_12_22555001 chr2L_22555001 RAL-852 181 chr2L 22716448 22716476 chr2L 22717849 22717877 INE-1 4 1401 1.5 0.5 1.0 2.0 1429 chr2L 22716448 intron CG40006 - chr2L 22717162 intron CG40006 - chr2L 22717877 intron CG40006 - chr2L_4_22715001 chr2L_22715001 RAL-852 182 chr2L 22776440 22776448 chr2L 22778229 22778236 S-element 4 1789 0.5 3.5 2.0 1.3 1796 chr2L 22776440 intergenic not near genes chr2L 22777338 intergenic not near genes chr2L 22778236 intergenic not near genes chr2L_4_22775001 chr2L_22775001 RAL-852 183 chr2R 529331 529357 chr2R 537953 537982 Max-element 6 8624 0.5 0.5 0.5 4.0 8651 chr2R 529331 intron CG40378 + chr2R 533656 intron CG40378 + chr2R 537982 intron CG40378 + chr2R_6_530001 chr2R_530001 RAL-852 184 chr2R 552774 552788 chr2R 553992 554006 1360 5 1218 2.5 2.0 2.2 1.6 1232 chr2R 552774 intron CG40378 + chr2R 553390 intron CG40378 + chr2R 554006 intron CG40378 + chr2R_5_550001 chr2R_550001 RAL-852 185 chr2R 2015137 2015159 chr2R 2015214 2015236 5 77 0.5 1.5 1.0 2.5 99 chr2R 2015137 intron CG17684 - chr2R 2015186 intron CG17684 - chr2R 2015236 intron CG17684 - chr2R_5_2015001 chr2R_2015001 RAL-852 186 chr2R 3818931 3818932 chr2R 3819047 3819048 4 116 4.0 0.5 2.2 1.2 117 chr2R 3818931 intergenic not near genes chr2R 3818990 intergenic not near genes chr2R 3819048 intergenic not near genes chr2R_4_3815001 chr2R_3815001 RAL-852 187 chr2R 4312953 4312986 chr2R 4313037 4313069 8 84 1.5 1.5 1.5 3.2 116 chr2R 4312953 intergenic not near genes chr2R 4313011 intergenic not near genes chr2R 4313069 intergenic not near genes chr2R_8_4310001 chr2R_4310001 RAL-852 188 chr2R 4634155 4634171 chr2R 4634234 4634248 4 78 1.0 0.5 0.8 2.2 93 chr2R 4634155 intergenic not near genes chr2R 4634202 intergenic not near genes chr2R 4634248 intergenic not near genes chr2R_4_4630001 chr2R_4630001 RAL-852 189 chr2R 4970250 4970272 chr2R 4970326 4970348 6 76 1.5 5.0 3.2 1.4 98 chr2R 4970250 intron Ir41a + chr2R 4970299 intron Ir41a + chr2R 4970348 intron Ir41a + chr2R_6_4970001 chr2R_4970001 RAL-852 190 chr2R 5009179 5009197 chr2R 5009257 5009269 6 76 0.5 1.5 1.0 3.0 90 chr2R 5009179 intron Ir41a + chr2R 5009224 intron Ir41a + chr2R 5009269 intron Ir41a + chr2R_6_5005001 chr2R_5005001 RAL-852 191 chr2R 5075354 5075372 chr2R 5075764 5075788 5 415 0.0 1.0 0.5 3.3 434 chr2R 5075354 intergenic not near genes chr2R 5075571 intergenic not near genes chr2R 5075788 intergenic not near genes chr2R_5_5075001 chr2R_5075001 RAL-852 192 chr2R 5266120 5266152 chr2R 5266203 5266234 10 82 11.5 19.5 15.5 0.6 114 chr2R 5266120 intron d4 + chr2R 5266177 intron d4 + chr2R 5266234 intron d4 + chr2R_10_5265001 chr2R_5265001 RAL-852 193 chr2R 5820677 5820708 chr2R 5820771 5820802 8 93 2.0 2.0 2.0 2.7 125 chr2R 5820677 intron dpr12 + chr2R 5820740 intron dpr12 + chr2R 5820802 intron dpr12 + chr2R_8_5820001 chr2R_5820001 RAL-852 194 chr2R 5869282 5869308 chr2R 5874357 5874384 flea 4 5076 2.5 3.5 3.0 1.0 5102 chr2R 5869282 intergenic not near genes chr2R 5871833 intergenic not near genes chr2R 5874384 intergenic not near genes chr2R_4_5870001 chr2R_5870001 RAL-852 195 chr2R 5876866 5876901 chr2R 5876968 5876999 5 101 2.5 3.5 3.0 1.2 133 chr2R 5876866 intergenic not near genes chr2R 5876932 intergenic not near genes chr2R 5876999 intergenic not near genes chr2R_5_5875001 chr2R_5875001 RAL-852 196 chr2R 5878928 5878958 chr2R 5879007 5879037 8 79 0.5 3.0 1.8 2.9 109 chr2R 5878928 intergenic CG44438 - chr2R 5878982 intergenic CG44438 - chr2R 5879037 intergenic CG44438 - chr2R_8_5875001 chr2R_5875001 RAL-852 197 chr2R 5902157 5902185 chr2R 5909716 5909744 17.6 4 7559 2.0 1.0 1.5 1.6 7587 chr2R 5902157 intron CG43366 + chr2R 5905950 intron CG43366 + chr2R 5909744 intron CG43366 + chr2R_4_5905001 chr2R_5905001 RAL-852 198 chr2R 5991937 5991966 chr2R 5992024 5992054 4 88 1.5 0.5 1.0 2.0 117 chr2R 5991937 intron Src42A + chr2R 5991996 intron Src42A + chr2R 5992054 intron Src42A + chr2R_4_5990001 chr2R_5990001 RAL-852 199 chr2R 6025013 6025194 chr2R 6025130 6025402 6 163 0.5 0.5 0.5 4.0 389 chr2R 6025013 intergenic not near genes chr2R 6025208 intergenic not near genes chr2R 6025402 intergenic not near genes chr2R_6_6025001 chr2R_6025001 RAL-852 200 chr2R 6065749 6065782 chr2R 6065861 6065894 5 111 0.5 2.0 1.2 2.3 145 chr2R 6065749 intron CCHa2-R + chr2R 6065822 intron CCHa2-R + chr2R 6065894 exon CCHa2-R + chr2R_5_6065001 chr2R_6065001 RAL-852 201 chr2R 6096719 6096731 chr2R 6101916 6101928 BS 4 5197 3.0 2.5 2.8 1.1 5209 chr2R 6096719 intron EcR - chr2R 6099324 intron EcR - chr2R 6101928 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-852 202 chr2R 6129325 6129358 chr2R 6129403 6129436 7 78 0.0 0.5 0.2 5.8 111 chr2R 6129325 intron EcR - chr2R 6129380 intron EcR - chr2R 6129436 intron EcR - chr2R_7_6125001 chr2R_6125001 RAL-852 203 chr2R 6532664 6532677 chr2R 6532775 6532783 4 110 1.5 1.0 1.2 1.8 119 chr2R 6532664 intron,3` UTR jing +,CR43905 - chr2R 6532724 intron,3` UTR jing +,CR43905 - chr2R 6532783 intron,3` UTR jing +,CR43905 - chr2R_4_6530001 chr2R_6530001 RAL-852 204 chr2R 6600995 6601016 chr2R 6601074 6601094 8 79 1.5 2.5 2.0 2.7 99 chr2R 6600995 intron jing + chr2R 6601044 intron jing + chr2R 6601094 intron jing + chr2R_8_6600001 chr2R_6600001 RAL-852 205 chr2R 6608795 6608804 chr2R 6611249 6611261 5 2456 10.0 11.0 10.5 0.4 2466 chr2R 6608795 intron jing + chr2R 6610028 intron jing + chr2R 6611261 intron jing + chr2R_5_6610001 chr2R_6610001 RAL-852 206 chr2R 6794742 6794763 chr2R 6794824 6794845 5 82 1.5 3.0 2.2 1.6 103 chr2R 6794742 intron Epac - chr2R 6794794 intron Epac - chr2R 6794845 intron Epac - chr2R_5_6790001 chr2R_6790001 RAL-852 207 chr2R 6898310 6898335 chr2R 6898653 6898678 4 342 2.5 0.0 1.2 1.8 368 chr2R 6898310 intron CG30158 + chr2R 6898494 intron CG30158 + chr2R 6898678 intron CG30158 + chr2R_4_6895001 chr2R_6895001 RAL-852 208 chr2R 7067967 7067992 chr2R 7068051 7068076 5 84 2.0 0.0 1.0 2.5 109 chr2R 7067967 intergenic CG12836 + chr2R 7068022 intergenic CG12836 + chr2R 7068076 intergenic CG12836 + chr2R_5_7065001 chr2R_7065001 RAL-852 209 chr2R 7209850 7209869 chr2R 7217597 7217617 roo 4 7747 1.5 3.0 2.2 1.2 7767 chr2R 7209850 intron pk + chr2R 7213734 intron pk + chr2R 7217617 intron pk + chr2R_4_7210001 chr2R_7210001 RAL-852 210 chr2R 7529060 7529076 chr2R 7529146 7529163 7 87 1.0 1.5 1.2 3.2 103 chr2R 7529060 intron Drat - chr2R 7529112 intron Drat - chr2R 7529163 intron Drat - chr2R_7_7525001 chr2R_7525001 RAL-852 211 chr2R 7642873 7642888 chr2R 7642953 7642968 5 80 0.0 3.0 1.5 2.0 95 chr2R 7642873 intron CG43340 + chr2R 7642920 intron CG43340 + chr2R 7642968 intron CG43340 + chr2R_5_7640001 chr2R_7640001 RAL-852 212 chr2R 7869194 7869221 chr2R 7873979 7874004 Doc 6 4784 3.5 2.5 3.0 1.5 4810 chr2R 7869194 intron Dgk - chr2R 7871599 intron Dgk - chr2R 7874004 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-852 213 chr2R 7916427 7916457 chr2R 7916510 7916542 7 85 1.0 0.0 0.5 4.7 115 chr2R 7916427 5` UTR CG12159 - chr2R 7916484 intergenic CG12159 -,Cul1 + chr2R 7916542 intergenic CG12159 -,Cul1 + chr2R_7_7915001 chr2R_7915001 RAL-852 214 chr2R 8015671 8015682 chr2R 8017694 8017705 4 2023 0.5 2.0 1.2 1.8 2034 chr2R 8015671 intergenic mir-4981 + chr2R 8016688 intergenic not near genes chr2R 8017705 intergenic not near genes chr2R_4_8015001 chr2R_8015001 RAL-852 215 chr2R 8067067 8067096 chr2R 8067151 8067180 4 84 0.5 2.0 1.2 1.8 113 chr2R 8067067 intron CG17977 - chr2R 8067124 intron CG17977 - chr2R 8067180 exon CG17977 - chr2R_4_8065001 chr2R_8065001 RAL-852 216 chr2R 8089255 8089271 chr2R 8089340 8089357 7 86 0.5 1.0 0.8 3.9 102 chr2R 8089255 3` UTR sut2 + chr2R 8089306 intergenic sut2 +,sut3 + chr2R 8089357 intergenic sut2 +,sut3 + chr2R_7_8085001 chr2R_8085001 RAL-852 217 chr2R 8151608 8151632 chr2R 8151688 8151712 4 80 0.5 1.0 0.8 2.2 104 chr2R 8151608 intron,intron Lpin -,kermit - chr2R 8151660 intron,intron Lpin -,kermit - chr2R 8151712 intron,intron Lpin -,kermit - chr2R_4_8150001 chr2R_8150001 RAL-852 218 chr2R 8241936 8241967 chr2R 8242020 8242050 8 84 1.5 2.5 2.0 2.7 114 chr2R 8241936 3` UTR CR44276 - chr2R 8241993 3` UTR CR44276 - chr2R 8242050 intergenic CR44276 -,CR44445 - chr2R_8_8240001 chr2R_8240001 RAL-852 219 chr2R 8566031 8566065 chr2R 8566983 8567011 1360 4 949 1.0 0.0 0.5 2.7 980 chr2R 8566031 5` UTR Cyp6a14 - chr2R 8566521 5` UTR Cyp6a14 - chr2R 8567011 5` UTR Cyp6a14 - chr2R_4_8565001 chr2R_8565001 RAL-852 220 chr2R 8849244 8849265 chr2R 8849321 8849343 4 78 1.5 2.0 1.8 1.4 99 chr2R 8849244 intron sns + chr2R 8849294 intron sns + chr2R 8849343 intron sns + chr2R_4_8845001 chr2R_8845001 RAL-852 221 chr2R 8967419 8967454 chr2R 8967566 8967601 6 146 0.0 1.0 0.5 4.0 182 chr2R 8967419 intron CG8216 - chr2R 8967510 intron CG8216 - chr2R 8967601 intron CG8216 - chr2R_6_8965001 chr2R_8965001 RAL-852 222 chr2R 9052733 9052739 chr2R 9052814 9052819 5 81 0.0 6.5 3.2 1.2 86 chr2R 9052733 intron CG13743 - chr2R 9052776 intron CG13743 - chr2R 9052819 intron CG13743 - chr2R_5_9050001 chr2R_9050001 RAL-852 223 chr2R 9065913 9065945 chr2R 9065995 9066027 7 82 3.0 0.0 1.5 2.8 114 chr2R 9065913 intron ana + chr2R 9065970 intron ana + chr2R 9066027 intron ana + chr2R_7_9065001 chr2R_9065001 RAL-852 224 chr2R 9206097 9206132 chr2R 9206180 9206215 7 83 0.5 3.5 2.0 2.3 118 chr2R 9206097 exon CG8027 - chr2R 9206156 exon CG8027 - chr2R 9206215 exon CG8027 - chr2R_7_9205001 chr2R_9205001 RAL-852 225 chr2R 9378109 9378129 chr2R 9378191 9378211 4 81 2.5 2.0 2.2 1.2 102 chr2R 9378109 intron CG13954 - chr2R 9378160 intron CG13954 - chr2R 9378211 intron CG13954 - chr2R_4_9375001 chr2R_9375001 RAL-852 226 chr2R 9480077 9480100 chr2R 9490608 9490631 roo 5 10531 2.0 0.5 1.2 2.3 10554 chr2R 9480077 intergenic not near genes chr2R 9485354 intergenic not near genes chr2R 9490631 intergenic not near genes chr2R_5_9485001 chr2R_9485001 RAL-852 227 chr2R 9605831 9605851 chr2R 9605938 9605958 5 107 0.0 0.5 0.2 4.2 127 chr2R 9605831 3` UTR CR44285 - chr2R 9605894 intergenic CR44285 -,GstT1 +,CG1902 + chr2R 9605958 intergenic GstT1 +,CR44285 -,CG1902 + chr2R_5_9605001 chr2R_9605001 RAL-852 228 chr2R 10017648 10017681 chr2R 10017727 10017760 4 79 0.0 1.5 0.8 2.2 112 chr2R 10017648 intron Pka-R2 - chr2R 10017704 intron Pka-R2 - chr2R 10017760 intron Pka-R2 - chr2R_4_10015001 chr2R_10015001 RAL-852 229 chr2R 10176880 10176910 chr2R 10186047 10186077 roo 5 9166 0.5 0.5 0.5 3.3 9197 chr2R 10176880 intron KCNQ - chr2R 10181478 intron KCNQ - chr2R 10186077 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-852 230 chr2R 10313332 10313344 chr2R 10313420 10313432 5 88 2.0 4.5 3.2 1.2 100 chr2R 10313332 intergenic not near genes chr2R 10313382 intergenic not near genes chr2R 10313432 intergenic Ndg + chr2R_5_10310001 chr2R_10310001 RAL-852 231 chr2R 10429021 10429034 chr2R 10429098 10429110 5 77 1.5 0.5 1.0 2.5 89 chr2R 10429021 intergenic not near genes chr2R 10429066 intergenic not near genes chr2R 10429110 intergenic not near genes chr2R_5_10425001 chr2R_10425001 RAL-852 232 chr2R 10454097 10454125 chr2R 10454174 10454202 9 77 3.0 1.0 2.0 3.0 105 chr2R 10454097 intron,intron Galphao +,Cyp49a1 - chr2R 10454150 intron,intron Galphao +,Cyp49a1 - chr2R 10454202 intron,intron Galphao +,Cyp49a1 - chr2R_9_10450001 chr2R_10450001 RAL-852 233 chr2R 10476467 10476496 chr2R 10476547 10476575 4 79 1.0 0.0 0.5 2.7 108 chr2R 10476467 intron whd - chr2R 10476521 intron whd - chr2R 10476575 intron whd - chr2R_4_10475001 chr2R_10475001 RAL-852 234 chr2R 10657049 10657065 chr2R 10657133 10657152 6 86 0.0 5.0 2.5 1.7 103 chr2R 10657049 intron CR44452 - chr2R 10657100 3` UTR CR44452 - chr2R 10657152 3` UTR CR44452 - chr2R_6_10655001 chr2R_10655001 RAL-852 235 chr2R 10771005 10771027 chr2R 10771086 10771108 5 81 0.5 2.5 1.5 2.0 103 chr2R 10771005 intron CG33144 - chr2R 10771056 intron CG33144 - chr2R 10771108 intron CG33144 - chr2R_5_10770001 chr2R_10770001 RAL-852 236 chr2R 11064716 11064737 chr2R 11064799 11064820 4 82 0.0 1.0 0.5 2.7 104 chr2R 11064716 intron luna - chr2R 11064768 intron luna - chr2R 11064820 intron luna - chr2R_4_11060001 chr2R_11060001 RAL-852 237 chr2R 11071559 11071585 chr2R 11071663 11071690 6 105 0.5 1.0 0.8 3.3 131 chr2R 11071559 intron luna - chr2R 11071624 intron luna - chr2R 11071690 intron luna - chr2R_6_11070001 chr2R_11070001 RAL-852 238 chr2R 11102869 11102889 chr2R 11102951 11102971 4 82 0.5 0.0 0.2 3.3 102 chr2R 11102869 intron luna - chr2R 11102920 intron luna - chr2R 11102971 intron luna - chr2R_4_11100001 chr2R_11100001 RAL-852 239 chr2R 11168065 11168095 chr2R 11168146 11168176 7 81 2.0 2.5 2.2 2.2 111 chr2R 11168065 intron,intron CG13229 -,shn + chr2R 11168120 intron,intron CG13229 -,shn + chr2R 11168176 intron,intron CG13229 -,shn + chr2R_7_11165001 chr2R_11165001 RAL-852 240 chr2R 11202122 11202149 chr2R 11202216 11202242 6 94 1.0 1.0 1.0 3.0 120 chr2R 11202122 intron shn + chr2R 11202182 intron shn + chr2R 11202242 intron shn + chr2R_6_11200001 chr2R_11200001 RAL-852 241 chr2R 11297625 11297649 chr2R 11301946 11301970 flea 6 4321 0.5 2.0 1.2 2.7 4345 chr2R 11297625 intergenic CG42336 - chr2R 11299798 intergenic not near genes chr2R 11301970 5` UTR CG7741 + chr2R_6_11295001 chr2R_11295001 RAL-852 242 chr2R 11393514 11393535 chr2R 11393607 11393628 4 93 3.5 1.5 2.5 1.1 114 chr2R 11393514 intron sprt - chr2R 11393571 intron sprt - chr2R 11393628 intron sprt - chr2R_4_11390001 chr2R_11390001 RAL-852 243 chr2R 11415529 11415550 chr2R 11418677 11418698 opus 4 3148 1.5 3.5 2.5 1.1 3169 chr2R 11415529 intron Drip - chr2R 11417114 intron Drip - chr2R 11418698 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-852 244 chr2R 11472658 11472677 chr2R 11473851 11473873 pogo 5 1196 1.5 2.5 2.0 1.7 1215 chr2R 11472658 intergenic not near genes chr2R 11473266 intergenic not near genes chr2R 11473873 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-852 245 chr2R 11561431 11561455 chr2R 11561516 11561539 7 85 1.5 1.5 1.5 2.8 108 chr2R 11561431 intergenic not near genes chr2R 11561485 intergenic not near genes chr2R 11561539 intergenic not near genes chr2R_7_11560001 chr2R_11560001 RAL-852 246 chr2R 11822980 11822996 chr2R 11823057 11823073 4 77 2.0 0.0 1.0 2.0 93 chr2R 11822980 intergenic not near genes chr2R 11823026 intergenic not near genes chr2R 11823073 intergenic not near genes chr2R_4_11820001 chr2R_11820001 RAL-852 247 chr2R 12506574 12506580 chr2R 12506650 12506656 4 76 0.5 3.5 2.0 1.3 82 chr2R 12506574 intron fdl - chr2R 12506615 intron fdl - chr2R 12506656 intron fdl - chr2R_4_12505001 chr2R_12505001 RAL-852 248 chr2R 12700811 12700849 chr2R 12700905 12700943 12 93 1.5 0.0 0.8 6.7 132 chr2R 12700811 3` UTR wuc + chr2R 12700877 intergenic wuc + chr2R 12700943 intergenic wuc + chr2R_12_12700001 chr2R_12700001 RAL-852 249 chr2R 12789293 12789311 chr2R 12797656 12797673 roo 4 8362 1.0 1.0 1.0 2.0 8380 chr2R 12789293 intron,3` UTR sca +,CR45137 - chr2R 12793483 intron,intron sca +,CR45137 - chr2R 12797673 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-852 250 chr2R 12819448 12819465 chr2R 12824520 12824538 jockey 4 5073 1.0 3.0 2.0 1.3 5090 chr2R 12819448 intergenic not near genes chr2R 12821993 intergenic not near genes chr2R 12824538 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-852 251 chr2R 12834159 12834192 chr2R 12834242 12834275 6 83 1.5 1.0 1.2 2.7 116 chr2R 12834159 intergenic not near genes chr2R 12834217 intergenic not near genes chr2R 12834275 intergenic not near genes chr2R_6_12830001 chr2R_12830001 RAL-852 252 chr2R 13136841 13136869 chr2R 13141639 13141666 Doc 8 4798 0.5 0.0 0.2 6.7 4825 chr2R 13136841 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141666 intron Cap-G + chr2R_8_13135001 chr2R_13135001 RAL-852 253 chr2R 13167426 13167462 chr2R 13167520 13167556 5 94 0.0 0.0 0.0 5.0 130 chr2R 13167426 intron GLaz - chr2R 13167491 intron GLaz - chr2R 13167556 intron GLaz - chr2R_5_13165001 chr2R_13165001 RAL-852 254 chr2R 13439112 13439117 chr2R 13439227 13439232 4 115 3.0 1.0 2.0 1.3 120 chr2R 13439112 intergenic CG42321 -,cnn - chr2R 13439172 intergenic CG42321 -,cnn - chr2R 13439232 intergenic cnn -,CG42321 - chr2R_4_13435001 chr2R_13435001 RAL-852 255 chr2R 13566263 13566284 chr2R 13566343 13566364 4 80 1.0 0.0 0.5 2.7 101 chr2R 13566263 intergenic not near genes chr2R 13566314 intergenic not near genes chr2R 13566364 intergenic not near genes chr2R_4_13565001 chr2R_13565001 RAL-852 256 chr2R 13580498 13580531 chr2R 13580848 13580880 jockey 4 350 0.0 1.0 0.5 2.7 382 chr2R 13580498 3` UTR CG6191 - chr2R 13580689 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580880 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-852 257 chr2R 13768988 13769005 chr2R 13769087 13769104 5 99 1.0 2.0 1.5 2.0 116 chr2R 13768988 intergenic not near genes chr2R 13769046 intergenic not near genes chr2R 13769104 intergenic not near genes chr2R_5_13765001 chr2R_13765001 RAL-852 258 chr2R 14249586 14249618 chr2R 14249685 14249717 9 99 2.0 1.0 1.5 3.6 131 chr2R 14249586 exon Mdr50 + chr2R 14249652 exon Mdr50 + chr2R 14249717 exon Mdr50 + chr2R_9_14245001 chr2R_14245001 RAL-852 259 chr2R 14386439 14386459 chr2R 14386526 14386546 4 87 0.0 1.0 0.5 2.7 107 chr2R 14386439 intergenic not near genes chr2R 14386492 intergenic not near genes chr2R 14386546 intergenic not near genes chr2R_4_14385001 chr2R_14385001 RAL-852 260 chr2R 14601891 14601926 chr2R 14601969 14602002 4 77 2.5 0.5 1.5 1.6 111 chr2R 14601891 3` UTR Blos1 + chr2R 14601946 3` UTR Blos1 + chr2R 14602002 3` UTR Blos1 + chr2R_4_14600001 chr2R_14600001 RAL-852 261 chr2R 14748867 14748882 chr2R 14748966 14748981 5 99 1.5 0.0 0.8 2.8 114 chr2R 14748867 intergenic AttB + chr2R 14748924 intergenic AttB + chr2R 14748981 intergenic AttB + chr2R_5_14745001 chr2R_14745001 RAL-852 262 chr2R 14820923 14820933 chr2R 14820995 14821010 7 76 1.0 3.0 2.0 2.3 87 chr2R 14820923 intergenic not near genes chr2R 14820966 intergenic not near genes chr2R 14821010 intergenic not near genes chr2R_7_14820001 chr2R_14820001 RAL-852 263 chr2R 14850058 14850088 chr2R 14850161 14850194 4 105 10.0 13.5 11.8 0.3 136 chr2R 14850058 exon SMC2 - chr2R 14850126 intron SMC2 - chr2R 14850194 exon SMC2 - chr2R_4_14850001 chr2R_14850001 RAL-852 264 chr2R 14889216 14889234 chr2R 14897823 14897842 Max-element 4 8608 2.5 0.0 1.2 1.8 8626 chr2R 14889216 intergenic Cyp6a8 - chr2R 14893529 intergenic not near genes chr2R 14897842 intergenic not near genes chr2R_4_14890001 chr2R_14890001 RAL-852 265 chr2R 14922149 14922165 chr2R 14922225 14922241 4 76 2.0 2.0 2.0 1.3 92 chr2R 14922149 intron CG10249 - chr2R 14922195 intron CG10249 - chr2R 14922241 intron CG10249 - chr2R_4_14920001 chr2R_14920001 RAL-852 266 chr2R 15015469 15015480 chr2R 15022888 15022904 mdg1 6 7423 1.0 2.5 1.8 2.1 7435 chr2R 15015469 intron hbs + chr2R 15019186 intron hbs + chr2R 15022904 intron hbs + chr2R_6_15015001 chr2R_15015001 RAL-852 267 chr2R 15137969 15138004 chr2R 15138049 15138086 5 81 0.5 0.0 0.2 4.2 117 chr2R 15137969 intron chn + chr2R 15138028 intron chn + chr2R 15138086 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-852 268 chr2R 15183047 15183066 chr2R 15183138 15183157 9 91 4.0 1.5 2.8 2.4 110 chr2R 15183047 intron igl + chr2R 15183102 intron igl + chr2R 15183157 intron igl + chr2R_9_15180001 chr2R_15180001 RAL-852 269 chr2R 15655981 15656013 chr2R 15656060 15656093 4 80 0.5 0.5 0.5 2.7 112 chr2R 15655981 intron CG42524 + chr2R 15656037 intron CG42524 + chr2R 15656093 intron CG42524 + chr2R_4_15655001 chr2R_15655001 RAL-852 270 chr2R 15675113 15675136 chr2R 15675190 15675213 4 77 1.5 1.0 1.2 1.8 100 chr2R 15675113 intron fus - chr2R 15675163 intron fus - chr2R 15675213 intron fus - chr2R_4_15675001 chr2R_15675001 RAL-852 271 chr2R 15700024 15700273 chr2R 15700114 15700365 6 91 1.0 0.5 0.8 3.3 341 chr2R 15700024 intron,5` UTR CG30080 -,CG42662 - chr2R 15700194 intron,5` UTR CG30080 -,CG42662 - chr2R 15700365 intron,5` UTR CG30080 -,CG42662 - chr2R_6_15700001 chr2R_15700001 RAL-852 272 chr2R 15810387 15810393 chr2R 15810466 15810468 4 78 1.5 2.0 1.8 1.4 81 chr2R 15810387 intron,intron Zasp52 -,tun + chr2R 15810428 intron,intron Zasp52 -,tun + chr2R 15810468 intron,intron Zasp52 -,tun + chr2R_4_15810001 chr2R_15810001 RAL-852 273 chr2R 16256155 16256174 chr2R 16256255 16256269 4 96 9.0 4.5 6.8 0.5 114 chr2R 16256155 intron CngA - chr2R 16256212 intron CngA - chr2R 16256269 intron CngA - chr2R_4_16255001 chr2R_16255001 RAL-852 274 chr2R 16470069 16470098 chr2R 16471068 16471096 4 999 1.0 2.0 1.5 1.6 1027 chr2R 16470069 intergenic not near genes chr2R 16470582 intergenic not near genes chr2R 16471096 intergenic not near genes chr2R_4_16470001 chr2R_16470001 RAL-852 275 chr2R 16723921 16723939 chr2R 16724001 16724019 4 80 1.5 0.0 0.8 2.2 98 chr2R 16723921 intron CG30463 - chr2R 16723970 intron CG30463 - chr2R 16724019 intron CG30463 - chr2R_4_16720001 chr2R_16720001 RAL-852 276 chr2R 16775653 16775672 chr2R 16775917 16775936 4 264 0.0 3.5 1.8 1.4 283 chr2R 16775653 3` UTR Arp53D + chr2R 16775794 intergenic Arp53D + chr2R 16775936 intergenic Arp53D + chr2R_4_16775001 chr2R_16775001 RAL-852 277 chr2R 17048622 17048654 chr2R 17048700 17048733 4 79 1.0 0.5 0.8 2.2 111 chr2R 17048622 3` UTR CG9642 + chr2R 17048678 3` UTR CG9642 + chr2R 17048733 3` UTR CG9642 + chr2R_4_17045001 chr2R_17045001 RAL-852 278 chr2R 17147246 17147270 chr2R 17152272 17152301 jockey 5 5030 1.5 0.5 1.0 2.5 5055 chr2R 17147246 intergenic not near genes chr2R 17149774 intergenic not near genes chr2R 17152301 intergenic not near genes chr2R_5_17145001 chr2R_17145001 RAL-852 279 chr2R 17221902 17221921 chr2R 17222094 17222113 4 192 3.5 1.0 2.2 1.2 211 chr2R 17221902 intron mbl + chr2R 17222008 intron mbl + chr2R 17222113 intron mbl + chr2R_4_17220001 chr2R_17220001 RAL-852 280 chr2R 17236513 17236539 chr2R 17241716 17241743 copia 8 5202 0.5 1.5 1.0 4.0 5230 chr2R 17236513 intron mbl + chr2R 17239128 intron mbl + chr2R 17241743 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-852 281 chr2R 17282746 17282773 chr2R 17282868 17282894 8 121 0.0 2.5 1.2 3.6 148 chr2R 17282746 intron mbl + chr2R 17282820 intron mbl + chr2R 17282894 intron mbl + chr2R_8_17280001 chr2R_17280001 RAL-852 282 chr2R 17335705 17335732 chr2R 17335809 17335836 5 104 0.5 1.0 0.8 2.8 131 chr2R 17335705 intron mbl + chr2R 17335770 intron mbl + chr2R 17335836 intron mbl + chr2R_5_17335001 chr2R_17335001 RAL-852 283 chr2R 17500679 17500689 chr2R 17500755 17500765 5 76 0.0 1.0 0.5 3.3 86 chr2R 17500679 intergenic not near genes chr2R 17500722 intergenic not near genes chr2R 17500765 intergenic not near genes chr2R_5_17500001 chr2R_17500001 RAL-852 284 chr2R 17512028 17512056 chr2R 17512140 17512168 7 110 1.5 0.5 1.0 3.5 140 chr2R 17512028 intron CG4847 + chr2R 17512098 intron CG4847 + chr2R 17512168 intron CG4847 + chr2R_7_17510001 chr2R_17510001 RAL-852 285 chr2R 17997165 17997191 chr2R 17997237 17997273 4 80 2.5 0.5 1.5 1.6 108 chr2R 17997165 intron dpr13 - chr2R 17997219 intron dpr13 - chr2R 17997273 intron dpr13 - chr2R_4_17995001 chr2R_17995001 RAL-852 286 chr2R 18216432 18216447 chr2R 18216514 18216531 5 83 0.0 1.5 0.8 2.8 99 chr2R 18216432 intergenic not near genes chr2R 18216482 intergenic not near genes chr2R 18216531 intergenic not near genes chr2R_5_18215001 chr2R_18215001 RAL-852 287 chr2R 18308284 18308313 chr2R 18308390 18308419 4 106 0.5 1.0 0.8 2.2 135 chr2R 18308284 intron sbb - chr2R 18308352 intron sbb - chr2R 18308419 intron sbb - chr2R_4_18305001 chr2R_18305001 RAL-852 288 chr2R 18396092 18396114 chr2R 18396174 18396196 5 82 1.5 0.0 0.8 2.8 104 chr2R 18396092 intergenic not near genes chr2R 18396144 intergenic GstE10 - chr2R 18396196 intergenic GstE10 - chr2R_5_18395001 chr2R_18395001 RAL-852 289 chr2R 18447120 18447152 chr2R 18454705 18454737 5 7586 8.0 3.5 5.8 0.7 7617 chr2R 18447120 5` UTR,exon CG30120 +,CG5189 + chr2R 18450928 5` UTR Prp19 - chr2R 18454737 intergenic CG17669 - chr2R_5_18450001 chr2R_18450001 RAL-852 290 chr2R 18526602 18526619 chr2R 18526681 18526701 5 81 2.0 2.5 2.2 1.6 99 chr2R 18526602 intergenic CG43066 + chr2R 18526652 intergenic CG43066 + chr2R 18526701 intergenic CG43066 + chr2R_5_18525001 chr2R_18525001 RAL-852 291 chr2R 18524104 18524121 chr2R 18526782 18526799 4 2678 14.5 8.5 11.5 0.3 2695 chr2R 18524104 intron CG43066 + chr2R 18525452 3` UTR CG43066 + chr2R 18526799 intergenic CG43066 + chr2R_4_18525001 chr2R_18525001 RAL-852 292 chr2R 18575808 18575824 chr2R 18581995 18582011 3S18 4 6188 0.0 2.5 1.2 1.8 6203 chr2R 18575808 intron GEFmeso - chr2R 18578910 intron GEFmeso - chr2R 18582011 intron GEFmeso - chr2R_4_18575001 chr2R_18575001 RAL-852 293 chr2R 18590866 18590894 chr2R 18600018 18600044 roo 4 9152 2.0 0.0 1.0 2.0 9178 chr2R 18590866 intron GEFmeso - chr2R 18595455 intron GEFmeso - chr2R 18600044 intron GEFmeso - chr2R_4_18595001 chr2R_18595001 RAL-852 294 chr2R 18888201 18888234 chr2R 18888387 18888418 6 185 0.5 0.0 0.2 5.0 217 chr2R 18888201 intron sano + chr2R 18888310 intron sano + chr2R 18888418 intron sano + chr2R_6_18885001 chr2R_18885001 RAL-852 295 chr2R 18989032 18989042 chr2R 18989110 18989119 4 78 1.0 2.0 1.5 1.6 87 chr2R 18989032 intron tn + chr2R 18989076 intron tn + chr2R 18989119 intron tn + chr2R_4_18985001 chr2R_18985001 RAL-852 296 chr2R 19284449 19284471 chr2R 19284529 19284552 4 80 0.0 2.0 1.0 2.0 103 chr2R 19284449 intergenic CG10476 -,CG11906 - chr2R 19284500 intergenic CG10476 - chr2R 19284552 exon CG10476 - chr2R_4_19280001 chr2R_19280001 RAL-852 297 chr2R 19359038 19359071 chr2R 19359121 19359154 6 83 0.0 0.5 0.2 5.0 116 chr2R 19359038 intron CG11961 + chr2R 19359096 intron CG11961 + chr2R 19359154 intron CG11961 + chr2R_6_19355001 chr2R_19355001 RAL-852 298 chr2R 19535567 19535599 chr2R 19535651 19535683 11 84 1.5 1.5 1.5 4.4 116 chr2R 19535567 intron sm - chr2R 19535625 intron sm - chr2R 19535683 intron sm - chr2R_11_19535001 chr2R_19535001 RAL-852 299 chr2R 19776595 19776621 chr2R 19779918 19779943 jockey 4 3323 0.0 0.5 0.2 3.3 3348 chr2R 19776595 intergenic not near genes chr2R 19778269 intergenic not near genes chr2R 19779943 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-852 300 chr2R 19914845 19914866 chr2R 19922257 19922278 mdg1 4 7412 1.0 2.0 1.5 1.6 7433 chr2R 19914845 intergenic not near genes chr2R 19918562 intergenic not near genes chr2R 19922278 intergenic not near genes chr2R_4_19915001 chr2R_19915001 RAL-852 301 chr2R 19957437 19957449 chr2R 19962638 19962651 copia 4 5202 0.0 0.5 0.2 3.3 5214 chr2R 19957437 intergenic CG44623 + chr2R 19960044 intergenic not near genes chr2R 19962651 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-852 302 chr2R 19967825 19967853 chr2R 19967921 19967948 11 95 3.0 6.0 4.5 2.0 123 chr2R 19967825 intergenic not near genes chr2R 19967886 intergenic not near genes chr2R 19967948 intergenic not near genes chr2R_11_19965001 chr2R_19965001 RAL-852 303 chr2R 20280811 20280836 chr2R 20281053 20281078 6 242 12.0 14.0 13.0 0.4 267 chr2R 20280811 intron CG9090 - chr2R 20280944 intron CG9090 - chr2R 20281078 5` UTR CG9090 - chr2R_6_20280001 chr2R_20280001 RAL-852 304 chr2R 20321243 20321257 chr2R 20321334 20321348 4 90 2.0 3.0 2.5 1.1 105 chr2R 20321243 intron CG8920 + chr2R 20321296 intron CG8920 + chr2R 20321348 intron CG8920 + chr2R_4_20320001 chr2R_20320001 RAL-852 305 chr2R 20394560 20394577 chr2R 20395062 20395078 4 502 1.5 2.5 2.0 1.3 518 chr2R 20394560 intergenic not near genes chr2R 20394819 intergenic not near genes chr2R 20395078 intergenic not near genes chr2R_4_20390001 chr2R_20390001 RAL-852 306 chr2R 20454798 20454830 chr2R 20454879 20454911 5 81 0.5 0.5 0.5 3.3 113 chr2R 20454798 intron CG12484 + chr2R 20454854 intron CG12484 + chr2R 20454911 intron CG12484 + chr2R_5_20450001 chr2R_20450001 RAL-852 307 chr2R 20468863 20468889 chr2R 20468947 20468972 5 84 1.5 0.0 0.8 2.8 109 chr2R 20468863 exon CG12484 + chr2R 20468918 intron CG12484 + chr2R 20468972 intron CG12484 + chr2R_5_20465001 chr2R_20465001 RAL-852 308 chr2R 20684093 20684099 chr2R 20684180 20684186 4 87 2.0 3.0 2.5 1.1 93 chr2R 20684093 intergenic not near genes chr2R 20684140 intergenic not near genes chr2R 20684186 intergenic not near genes chr2R_4_20680001 chr2R_20680001 RAL-852 309 chr2R 20690760 20690786 chr2R 20690836 20690862 11 76 0.0 2.0 1.0 5.5 102 chr2R 20690760 intergenic not near genes chr2R 20690811 intergenic not near genes chr2R 20690862 intergenic not near genes chr2R_11_20690001 chr2R_20690001 RAL-852 310 chr2R 20725050 20725074 chr2R 20725170 20725196 8 121 1.5 0.5 1.0 4.0 146 chr2R 20725050 intron dpr + chr2R 20725123 intron dpr + chr2R 20725196 intron dpr + chr2R_8_20725001 chr2R_20725001 RAL-852 311 chr2R 20739444 20739477 chr2R 20744212 20744239 F-element 4 4764 0.5 2.0 1.2 1.8 4795 chr2R 20739444 intron dpr + chr2R 20741842 intron dpr + chr2R 20744239 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-852 312 chr2R 21175632 21175653 chr2R 21175918 21175942 6 286 10.5 11.0 10.8 0.5 310 chr2R 21175632 exon Pu + chr2R 21175787 intron Pu + chr2R 21175942 intron Pu + chr2R_6_21175001 chr2R_21175001 RAL-852 313 chr2R 21721377 21721404 chr2R 21721816 21721842 7 439 4.0 1.5 2.8 1.8 465 chr2R 21721377 intron LBR + chr2R 21721610 intron LBR + chr2R 21721842 intron LBR + chr2R_7_21720001 chr2R_21720001 RAL-852 314 chr2R 21753083 21753116 chr2R 21753568 21753601 roo 5 485 2.5 1.5 2.0 1.7 518 chr2R 21753083 intergenic not near genes chr2R 21753342 intergenic not near genes chr2R 21753601 intergenic not near genes chr2R_5_21750001 chr2R_21750001 RAL-852 315 chr2R 21772226 21772247 chr2R 21772307 21772328 4 81 1.0 1.5 1.2 1.8 102 chr2R 21772226 intergenic not near genes chr2R 21772277 intergenic not near genes chr2R 21772328 intergenic not near genes chr2R_4_21770001 chr2R_21770001 RAL-852 316 chr2R 21857348 21857366 chr2R 21857439 21857450 8 89 2.0 4.0 3.0 2.0 102 chr2R 21857348 intergenic not near genes chr2R 21857399 intergenic not near genes chr2R 21857450 intergenic not near genes chr2R_8_21855001 chr2R_21855001 RAL-852 317 chr2R 21886134 21886157 chr2R 21886213 21886236 5 79 1.5 0.0 0.8 2.8 102 chr2R 21886134 intron Fili + chr2R 21886185 intron Fili + chr2R 21886236 intron Fili + chr2R_5_21885001 chr2R_21885001 RAL-852 318 chr2R 22035551 22035560 chr2R 22035637 22035647 4 87 1.0 1.0 1.0 2.0 96 chr2R 22035551 intron,3` UTR CG34370 -,CG9308 + chr2R 22035599 intron,3` UTR CG34370 -,CG9308 + chr2R 22035647 intron,3` UTR CG34370 -,CG9308 + chr2R_4_22035001 chr2R_22035001 RAL-852 319 chr2R 22349691 22349719 chr2R 22351475 22351503 jockey 4 1784 1.5 1.0 1.2 1.8 1812 chr2R 22349691 intron Liprin-gamma - chr2R 22350597 intron Liprin-gamma - chr2R 22351503 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-852 320 chr2R 22460381 22460403 chr2R 22460460 22460482 8 79 1.5 2.5 2.0 2.7 101 chr2R 22460381 intron CG10384 + chr2R 22460432 intron CG10384 + chr2R 22460482 intron CG10384 + chr2R_8_22460001 chr2R_22460001 RAL-852 321 chr2R 22499858 22499879 chr2R 22499934 22499955 8 76 0.0 0.5 0.2 6.7 97 chr2R 22499858 intron px - chr2R 22499906 intron px - chr2R 22499955 intron px - chr2R_8_22495001 chr2R_22495001 RAL-852 322 chr2R 22525768 22525785 chr2R 22529327 22529343 jockey 5 3558 1.0 1.5 1.2 2.3 3575 chr2R 22525768 intron px - chr2R 22527556 intron px - chr2R 22529343 intron px - chr2R_5_22525001 chr2R_22525001 RAL-852 323 chr2R 22599155 22599187 chr2R 22599250 22599282 4 95 2.0 1.0 1.5 1.6 127 chr2R 22599155 intron CG4269 + chr2R 22599218 intron CG4269 + chr2R 22599282 intron CG4269 + chr2R_4_22595001 chr2R_22595001 RAL-852 324 chr2R 22774966 22774992 chr2R 22775384 22775411 jockey 6 419 0.5 0.5 0.5 4.0 445 chr2R 22774966 intron CG42260 - chr2R 22775188 intron CG42260 - chr2R 22775411 intron CG42260 - chr2R_6_22775001 chr2R_22775001 RAL-852 325 chr2R 22775489 22775517 chr2R 22775578 22775606 5 89 2.0 1.5 1.8 1.8 117 chr2R 22775489 intron CG42260 - chr2R 22775548 intron CG42260 - chr2R 22775606 intron CG42260 - chr2R_5_22775001 chr2R_22775001 RAL-852 326 chr2R 22835369 22835397 chr2R 22835445 22835472 9 75 0.5 3.0 1.8 3.2 103 chr2R 22835369 exon CG12490 + chr2R 22835420 exon CG12490 + chr2R 22835472 exon CG12490 + chr2R_9_22835001 chr2R_22835001 RAL-852 327 chr2R 22945056 22945082 chr2R 22945170 22945196 7 114 1.5 0.5 1.0 3.5 140 chr2R 22945056 exon CG42694 + chr2R 22945126 3` UTR CG42694 + chr2R 22945196 intergenic CG42694 + chr2R_7_22945001 chr2R_22945001 RAL-852 328 chr2R 23175040 23175062 chr2R 23175116 23175139 4 76 1.0 0.5 0.8 2.2 99 chr2R 23175040 intron CG34371 - chr2R 23175090 intron CG34371 - chr2R 23175139 intron CG34371 - chr2R_4_23175001 chr2R_23175001 RAL-852 329 chr2R 23421085 23421119 chr2R 23421164 23421198 7 79 2.5 1.0 1.8 2.5 113 chr2R 23421085 intergenic CG9815 - chr2R 23421142 intergenic CG9815 - chr2R 23421198 intergenic CG9815 - chr2R_7_23420001 chr2R_23420001 RAL-852 330 chr2R 23487456 23487469 chr2R 23487537 23487550 4 82 2.0 1.5 1.8 1.4 94 chr2R 23487456 intron CG43795 + chr2R 23487503 intron CG43795 + chr2R 23487550 intron CG43795 + chr2R_4_23485001 chr2R_23485001 RAL-852 331 chr2R 23508920 23508936 chr2R 23509037 23509053 4 117 2.5 0.5 1.5 1.6 133 chr2R 23508920 intergenic not near genes chr2R 23508986 intergenic not near genes chr2R 23509053 intergenic not near genes chr2R_4_23505001 chr2R_23505001 RAL-852 332 chr2R 23529575 23529596 chr2R 23537151 23537166 412 4 7574 1.5 1.5 1.5 1.6 7591 chr2R 23529575 intron bw - chr2R 23533370 intron bw - chr2R 23537166 exon bw - chr2R_4_23530001 chr2R_23530001 RAL-852 333 chr2R 23636719 23636742 chr2R 23636797 23636820 5 78 2.0 1.5 1.8 1.8 101 chr2R 23636719 intron retn + chr2R 23636770 intron retn + chr2R 23636820 intron retn + chr2R_5_23635001 chr2R_23635001 RAL-852 334 chr2R 23758325 23758356 chr2R 23758401 23758427 8 75 1.5 4.0 2.8 2.1 102 chr2R 23758325 intron CG9850 - chr2R 23758376 intron CG9850 - chr2R 23758427 intron CG9850 - chr2R_8_23755001 chr2R_23755001 RAL-852 335 chr2R 23914321 23914330 chr2R 23921944 23921954 412 5 7623 0.5 1.5 1.0 2.5 7633 chr2R 23914321 exon kcc + chr2R 23918138 intron kcc + chr2R 23921954 intron kcc + chr2R_5_23915001 chr2R_23915001 RAL-852 336 chr2R 24008426 24008441 chr2R 24008512 24008527 6 86 2.5 6.0 4.2 1.2 101 chr2R 24008426 intron Unc-89 - chr2R 24008476 intron Unc-89 - chr2R 24008527 intron Unc-89 - chr2R_6_24005001 chr2R_24005001 RAL-852 337 chr2R 24147067 24147088 chr2R 24154645 24154666 412 5 7577 1.0 3.0 2.0 1.7 7599 chr2R 24147067 intron Dat + chr2R 24150866 intron Dat + chr2R 24154666 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-852 338 chr2R 24177242 24177257 chr2R 24184727 24184742 412 6 7485 4.0 1.5 2.8 1.6 7500 chr2R 24177242 3` UTR Nop60B + chr2R 24180992 intron Nop60B + chr2R 24184742 3` UTR Nop60B + chr2R_6_24180001 chr2R_24180001 RAL-852 339 chr2R 24353427 24353462 chr2R 24361788 24361824 roo 7 8362 1.0 1.0 1.0 3.5 8397 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357626 intron,intron bs +,CR44811 - chr2R 24361824 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-852 340 chr2R 24435614 24435645 chr2R 24435710 24435740 7 96 0.5 1.5 1.0 3.5 126 chr2R 24435614 intergenic not near genes chr2R 24435677 intergenic not near genes chr2R 24435740 intergenic not near genes chr2R_7_24435001 chr2R_24435001 RAL-852 341 chr2R 24687637 24687659 chr2R 24687722 24687741 6 83 2.0 2.0 2.0 2.0 104 chr2R 24687637 intergenic Mmp1 - chr2R 24687689 intergenic Mmp1 - chr2R 24687741 intergenic Mmp1 - chr2R_6_24685001 chr2R_24685001 RAL-852 342 chr2R 24718457 24718486 chr2R 24718539 24718568 4 82 1.0 1.5 1.2 1.8 111 chr2R 24718457 intron Mid1 - chr2R 24718512 intron Mid1 - chr2R 24718568 intron Mid1 - chr2R_4_24715001 chr2R_24715001 RAL-852 343 chr2R 24719806 24719826 chr2R 24719918 24719938 4 111 2.0 2.5 2.2 1.2 132 chr2R 24719806 intron Mid1 - chr2R 24719872 intron Mid1 - chr2R 24719938 intron Mid1 - chr2R_4_24715001 chr2R_24715001 RAL-852 344 chr2R 24727890 24727918 chr2R 24735398 24735426 mdg1 6 7508 1.0 5.0 3.0 1.5 7536 chr2R 24727890 intron Mid1 - chr2R 24731658 intron Mid1 - chr2R 24735426 intron Mid1 - chr2R_6_24730001 chr2R_24730001 RAL-852 345 chr2R 24763613 24763641 chr2R 24765588 24765617 G2 6 1976 2.5 3.0 2.8 1.6 2004 chr2R 24763613 exon CG3894 + chr2R 24764615 intron CG3894 + chr2R 24765617 exon CG3894 + chr2R_6_24760001 chr2R_24760001 RAL-852 346 chr2R 24884053 24884066 chr2R 24884135 24884148 4 82 2.0 2.0 2.0 1.3 95 chr2R 24884053 intron NKAIN + chr2R 24884100 intron NKAIN + chr2R 24884148 intron NKAIN + chr2R_4_24880001 chr2R_24880001 RAL-852 347 chr2R 25004891 25004919 chr2R 25004969 25004993 8 77 2.0 2.0 2.0 2.7 102 chr2R 25004891 intron zip - chr2R 25004942 intron zip - chr2R 25004993 intron zip - chr2R_8_25000001 chr2R_25000001 RAL-852 348 chr2R 25014544 25014576 chr2R 25014620 25014652 10 75 0.5 1.5 1.0 5.0 108 chr2R 25014544 intron uzip + chr2R 25014598 intron uzip + chr2R 25014652 intron uzip + chr2R_10_25010001 chr2R_25010001 RAL-852 349 chr2R 25018346 25018368 chr2R 25018447 25018468 8 101 2.0 2.5 2.2 2.5 122 chr2R 25018346 intron uzip + chr2R 25018407 intron uzip + chr2R 25018468 intron uzip + chr2R_8_25015001 chr2R_25015001 RAL-852 350 chr2R 25022645 25022662 chr2R 25022729 25022746 4 84 1.5 1.0 1.2 1.8 101 chr2R 25022645 intron uzip + chr2R 25022696 intron uzip + chr2R 25022746 intron uzip + chr2R_4_25020001 chr2R_25020001 RAL-852 351 chr2R 25080306 25080337 chr2R 25080676 25080707 8 370 1.0 1.0 1.0 4.0 401 chr2R 25080306 intron gol - chr2R 25080506 intron gol - chr2R 25080707 intron gol - chr2R_8_25080001 chr2R_25080001 RAL-852 352 chr2R 25081610 25081633 chr2R 25082705 25082729 5 1096 0.5 1.5 1.0 2.5 1119 chr2R 25081610 intron gol - chr2R 25082170 intron gol - chr2R 25082729 intron gol - chr2R_5_25080001 chr2R_25080001 RAL-852 353 chr2R 25101287 25101309 chr2R 25101389 25101410 5 102 2.5 1.5 2.0 1.7 123 chr2R 25101287 intron lov - chr2R 25101348 intron lov - chr2R 25101410 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-852 354 chr2R 25122977 25122993 chr2R 25123056 25123072 5 79 1.5 1.0 1.2 2.3 95 chr2R 25122977 intron lov - chr2R 25123024 intron lov - chr2R 25123072 intron lov - chr2R_5_25120001 chr2R_25120001 RAL-852 355 chr2R 25253444 25253467 chr2R 25253520 25253543 5 76 1.0 1.0 1.0 2.5 99 chr2R 25253444 intron,intron CG9380 -,CG30428 + chr2R 25253494 intron,intron CG9380 -,CG30428 + chr2R 25253543 intron,intron CG9380 -,CG30428 + chr2R_5_25250001 chr2R_25250001 RAL-852 356 chr3L 93802 93822 chr3L 93883 93903 5 81 1.5 5.0 3.2 1.2 101 chr3L 93802 intergenic not near genes chr3L 93852 intergenic not near genes chr3L 93903 intergenic not near genes chr3L_5_90001 chr3L_90001 RAL-852 357 chr3L 106006 106014 chr3L 106135 106143 5 129 2.0 3.0 2.5 1.4 137 chr3L 106006 intergenic not near genes chr3L 106074 intergenic not near genes chr3L 106143 intergenic not near genes chr3L_5_105001 chr3L_105001 RAL-852 358 chr3L 165680 165704 chr3L 165818 165842 4 138 3.5 2.0 2.8 1.1 162 chr3L 165680 intron p130CAS + chr3L 165761 intron p130CAS + chr3L 165842 intron p130CAS + chr3L_4_165001 chr3L_165001 RAL-852 359 chr3L 376128 376146 chr3L 376207 376225 5 79 2.0 1.5 1.8 1.8 97 chr3L 376128 intron trh - chr3L 376176 intron trh - chr3L 376225 intron trh - chr3L_5_375001 chr3L_375001 RAL-852 360 chr3L 402694 402717 chr3L 409746 409770 297 12 7052 6.0 5.5 5.8 1.8 7076 chr3L 402694 intergenic not near genes chr3L 406232 intergenic not near genes chr3L 409770 intergenic not near genes chr3L_12_405001 chr3L_405001 RAL-852 361 chr3L 467596 467624 chr3L 467673 467701 5 77 1.0 6.5 3.8 1.0 105 chr3L 467596 intron klar - chr3L 467648 intron klar - chr3L 467701 intron klar - chr3L_5_465001 chr3L_465001 RAL-852 362 chr3L 535046 535075 chr3L 535128 535157 5 82 1.5 1.5 1.5 2.0 111 chr3L 535046 intron klar - chr3L 535102 intron klar - chr3L 535157 intron klar - chr3L_5_535001 chr3L_535001 RAL-852 363 chr3L 651388 651424 chr3L 651475 651512 11 88 1.0 1.5 1.2 5.0 124 chr3L 651388 intergenic Gale +,CG3402 - chr3L 651450 intergenic CG3402 -,Gale + chr3L 651512 intergenic CG3402 -,Gale + chr3L_11_650001 chr3L_650001 RAL-852 364 chr3L 705249 705258 chr3L 705325 705334 4 76 1.5 0.0 0.8 2.2 85 chr3L 705249 intergenic CR44514 + chr3L 705292 intergenic CR44514 + chr3L 705334 5` UTR CR44514 + chr3L_4_705001 chr3L_705001 RAL-852 365 chr3L 705899 705915 chr3L 705995 706011 5 96 3.5 3.0 3.2 1.2 112 chr3L 705899 intergenic CG13895 -,CR44514 + chr3L 705955 3` UTR CG13895 - chr3L 706011 3` UTR CG13895 - chr3L_5_705001 chr3L_705001 RAL-852 366 chr3L 1003055 1003066 chr3L 1003132 1003142 5 77 3.5 2.0 2.8 1.3 87 chr3L 1003055 intron trio - chr3L 1003098 intron trio - chr3L 1003142 intron trio - chr3L_5_1000001 chr3L_1000001 RAL-852 367 chr3L 1015027 1015046 chr3L 1015138 1015157 4 111 2.5 1.5 2.0 1.3 130 chr3L 1015027 intron trio - chr3L 1015092 intron trio - chr3L 1015157 intron trio - chr3L_4_1015001 chr3L_1015001 RAL-852 368 chr3L 1109637 1109650 chr3L 1109725 1109738 5 88 0.5 0.5 0.5 3.3 101 chr3L 1109637 intergenic not near genes chr3L 1109688 intergenic not near genes chr3L 1109738 intergenic not near genes chr3L_5_1105001 chr3L_1105001 RAL-852 369 chr3L 1374431 1374444 chr3L 1374508 1374521 4 77 3.0 1.0 2.0 1.3 90 chr3L 1374431 intron,intron Ptp61F -,ru + chr3L 1374476 intron,intron Ptp61F -,ru + chr3L 1374521 intron,intron Ptp61F -,ru + chr3L_4_1370001 chr3L_1370001 RAL-852 370 chr3L 1600187 1600189 chr3L 11777678 11777678 4 10177490 2.0 10.0 6.0 0.6 10177491 chr3L 1600187 3` UTR CG13917 + chr3L 6688932 intergenic SP1173 - chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_6685001 chr3L_6685001 RAL-852 371 chr3L 1662900 1662917 chr3L 1662976 1662993 4 76 0.5 0.5 0.5 2.7 93 chr3L 1662900 intron CG7971 - chr3L 1662946 intron CG7971 - chr3L 1662993 intron CG7971 - chr3L_4_1660001 chr3L_1660001 RAL-852 372 chr3L 1729184 1729213 chr3L 1729274 1729303 5 89 1.0 1.0 1.0 2.5 119 chr3L 1729184 intron drpr - chr3L 1729244 intron drpr - chr3L 1729303 intron drpr - chr3L_5_1725001 chr3L_1725001 RAL-852 373 chr3L 1922456 1922464 chr3L 1922534 1922542 4 78 4.0 2.5 3.2 1.0 86 chr3L 1922456 intron Dbx + chr3L 1922499 intron Dbx + chr3L 1922542 intron Dbx + chr3L_4_1920001 chr3L_1920001 RAL-852 374 chr3L 1923008 1923023 chr3L 1923098 1923113 4 90 2.0 2.0 2.0 1.3 105 chr3L 1923008 intron Dbx + chr3L 1923060 intron Dbx + chr3L 1923113 intron Dbx + chr3L_4_1920001 chr3L_1920001 RAL-852 375 chr3L 1993075 1993105 chr3L 1993158 1993188 7 83 1.0 0.5 0.8 3.9 113 chr3L 1993075 intergenic not near genes chr3L 1993132 intergenic not near genes chr3L 1993188 intergenic not near genes chr3L_7_1990001 chr3L_1990001 RAL-852 376 chr3L 2139210 2139224 chr3L 2139290 2139305 4 81 3.0 2.0 2.5 1.1 95 chr3L 2139210 intron zormin - chr3L 2139258 intron zormin - chr3L 2139305 intron zormin - chr3L_4_2135001 chr3L_2135001 RAL-852 377 chr3L 2282991 2283023 chr3L 2283066 2283099 4 76 1.5 1.0 1.2 1.8 108 chr3L 2282991 5` UTR MsR2 + chr3L 2283045 5` UTR MsR2 + chr3L 2283099 5` UTR MsR2 + chr3L_4_2280001 chr3L_2280001 RAL-852 378 chr3L 2293393 2293417 chr3L 2293473 2293497 7 80 2.5 1.0 1.8 2.5 104 chr3L 2293393 intron MsR2 + chr3L 2293445 intron MsR2 + chr3L 2293497 intron MsR2 + chr3L_7_2290001 chr3L_2290001 RAL-852 379 chr3L 2331582 2331600 chr3L 2331659 2331677 4 77 2.5 1.0 1.8 1.4 95 chr3L 2331582 intron MsR1 + chr3L 2331630 intron MsR1 + chr3L 2331677 intron MsR1 + chr3L_4_2330001 chr3L_2330001 RAL-852 380 chr3L 2447505 2447536 chr3L 2456661 2456692 roo 4 9156 2.0 2.0 2.0 1.3 9187 chr3L 2447505 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456692 intron CG45186 + chr3L_4_2450001 chr3L_2450001 RAL-852 381 chr3L 2459143 2459161 chr3L 2459304 2459322 7 161 0.5 0.5 0.5 4.7 179 chr3L 2459143 intron CG45186 + chr3L 2459232 intron CG45186 + chr3L 2459322 intron CG45186 + chr3L_7_2455001 chr3L_2455001 RAL-852 382 chr3L 2492318 2492330 chr3L 2492409 2492417 4 90 0.0 0.5 0.2 3.3 99 chr3L 2492318 intron,3` UTR CG45186 +,CG1146 + chr3L 2492368 intron,3` UTR CG45186 +,CG1146 + chr3L 2492417 intron,3` UTR CG45186 +,CG1146 + chr3L_4_2490001 chr3L_2490001 RAL-852 383 chr3L 2493822 2493842 chr3L 2493900 2493918 6 78 3.0 0.5 1.8 2.1 96 chr3L 2493822 intron CG45186 + chr3L 2493870 intron CG45186 + chr3L 2493918 intron CG45186 + chr3L_6_2490001 chr3L_2490001 RAL-852 384 chr3L 2548305 2548333 chr3L 2548389 2548417 5 84 1.5 0.5 1.0 2.5 112 chr3L 2548305 intron Spn - chr3L 2548361 intron Spn - chr3L 2548417 intron Spn - chr3L_5_2545001 chr3L_2545001 RAL-852 385 chr3L 2683946 2683975 chr3L 2684022 2684051 7 76 2.0 0.0 1.0 3.5 105 chr3L 2683946 intron Fife - chr3L 2683998 intron Fife - chr3L 2684051 intron Fife - chr3L_7_2680001 chr3L_2680001 RAL-852 386 chr3L 2719539 2719555 chr3L 2719641 2719656 5 102 2.5 1.0 1.8 1.8 117 chr3L 2719539 3` UTR Mrtf - chr3L 2719598 3` UTR Mrtf - chr3L 2719656 3` UTR Mrtf - chr3L_5_2715001 chr3L_2715001 RAL-852 387 chr3L 2904458 2904475 chr3L 2904542 2904559 6 84 3.0 1.5 2.2 1.9 101 chr3L 2904458 intron Shab + chr3L 2904508 intron Shab + chr3L 2904559 intron Shab + chr3L_6_2900001 chr3L_2900001 RAL-852 388 chr3L 3050902 3050921 chr3L 3050989 3051008 5 87 1.0 1.0 1.0 2.5 106 chr3L 3050902 intron CG32485 + chr3L 3050955 intron CG32485 + chr3L 3051008 exon CG32485 + chr3L_5_3050001 chr3L_3050001 RAL-852 389 chr3L 3102823 3102847 chr3L 3102909 3102933 5 84 1.5 3.5 2.5 1.4 110 chr3L 3102823 intron Cht7 - chr3L 3102878 intron Cht7 - chr3L 3102933 intron Cht7 - chr3L_5_3100001 chr3L_3100001 RAL-852 390 chr3L 3281436 3281461 chr3L 3281932 3281957 Doc 9 496 2.5 2.0 2.2 2.8 521 chr3L 3281436 intron CG12017 + chr3L 3281696 intron CG12017 + chr3L 3281957 intron CG12017 + chr3L_9_3280001 chr3L_3280001 RAL-852 391 chr3L 3475079 3475101 chr3L 3475523 3475545 jockey 4 444 2.0 0.0 1.0 2.0 466 chr3L 3475079 intron CG42324 + chr3L 3475312 intron CG42324 + chr3L 3475545 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-852 392 chr3L 3484419 3484440 chr3L 3484496 3484517 5 77 1.0 1.5 1.2 2.3 98 chr3L 3484419 intron,intron CG42324 +,CG43074 - chr3L 3484468 intron,exon CG42324 +,CG43074 - chr3L 3484517 intron,intron CG42324 +,CG43074 - chr3L_5_3480001 chr3L_3480001 RAL-852 393 chr3L 3494199 3494208 chr3L 3494276 3494285 4 77 0.0 2.0 1.0 2.0 86 chr3L 3494199 intron CG42324 + chr3L 3494242 intron CG42324 + chr3L 3494285 intron CG42324 + chr3L_4_3490001 chr3L_3490001 RAL-852 394 chr3L 3573168 3573186 chr3L 3573251 3573269 4 83 1.0 1.0 1.0 2.0 101 chr3L 3573168 intron Eip63E + chr3L 3573218 intron Eip63E + chr3L 3573269 intron Eip63E + chr3L_4_3570001 chr3L_3570001 RAL-852 395 chr3L 3672993 3673027 chr3L 3673100 3673134 8 107 2.5 1.5 2.0 2.7 141 chr3L 3672993 intergenic not near genes chr3L 3673064 intergenic not near genes chr3L 3673134 intergenic not near genes chr3L_8_3670001 chr3L_3670001 RAL-852 396 chr3L 3815052 3815080 chr3L 3815133 3815161 7 81 0.5 1.0 0.8 3.9 109 chr3L 3815052 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815106 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815161 intron,intron Scsalpha +,CR43932 - chr3L_7_3815001 chr3L_3815001 RAL-852 397 chr3L 3939888 3939914 chr3L 3940399 3940426 8 512 1.5 3.5 2.5 2.3 538 chr3L 3939888 intron CG12766 - chr3L 3940157 intergenic CG12766 -,CR43916 + chr3L 3940426 intergenic CR43916 +,CG12766 - chr3L_8_3940001 chr3L_3940001 RAL-852 398 chr3L 4015737 4015766 chr3L 4015820 4015849 5 83 0.5 1.0 0.8 2.8 112 chr3L 4015737 intergenic not near genes chr3L 4015793 intergenic not near genes chr3L 4015849 intergenic not near genes chr3L_5_4015001 chr3L_4015001 RAL-852 399 chr3L 4064254 4064280 chr3L 4064332 4064357 5 77 1.0 1.5 1.2 2.3 103 chr3L 4064254 3` UTR,3` UTR dib +,wit - chr3L 4064306 3` UTR,3` UTR dib +,wit - chr3L 4064357 3` UTR,3` UTR dib +,wit - chr3L_5_4060001 chr3L_4060001 RAL-852 400 chr3L 4270957 4270979 chr3L 4271032 4271057 4 78 0.5 2.0 1.2 1.8 100 chr3L 4270957 intron CG1273 + chr3L 4271007 intron CG1273 + chr3L 4271057 intron CG1273 + chr3L_4_4270001 chr3L_4270001 RAL-852 401 chr3L 4516834 4516857 chr3L 4516911 4516934 4 77 1.5 1.0 1.2 1.8 100 chr3L 4516834 intron Tie - chr3L 4516884 intron Tie - chr3L 4516934 intron Tie - chr3L_4_4515001 chr3L_4515001 RAL-852 402 chr3L 4652573 4652592 chr3L 4652656 4652674 5 83 1.0 1.0 1.0 2.5 101 chr3L 4652573 intron axo - chr3L 4652624 intron axo - chr3L 4652674 intron axo - chr3L_5_4650001 chr3L_4650001 RAL-852 403 chr3L 4775843 4775881 chr3L 4775931 4775969 7 87 1.5 2.5 2.0 2.3 126 chr3L 4775843 intron RhoGEF64C + chr3L 4775906 intron RhoGEF64C + chr3L 4775969 intron RhoGEF64C + chr3L_7_4775001 chr3L_4775001 RAL-852 404 chr3L 4840411 4840421 chr3L 4840519 4840530 4 109 0.5 1.5 1.0 2.0 119 chr3L 4840411 intergenic CG13707 - chr3L 4840470 intergenic CG13707 - chr3L 4840530 intergenic CG13707 - chr3L_4_4840001 chr3L_4840001 RAL-852 405 chr3L 4858301 4858336 chr3L 4858391 4858423 5 88 2.0 2.0 2.0 1.7 122 chr3L 4858301 intergenic not near genes chr3L 4858362 intergenic not near genes chr3L 4858423 intergenic not near genes chr3L_5_4855001 chr3L_4855001 RAL-852 406 chr3L 4901136 4901155 chr3L 4907326 4907345 diver 5 6190 2.0 3.0 2.5 1.4 6209 chr3L 4901136 intergenic CG13704 + chr3L 4904240 intergenic not near genes chr3L 4907345 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-852 407 chr3L 5096138 5096171 chr3L 5096366 5096399 5 228 1.0 1.0 1.0 2.5 261 chr3L 5096138 intergenic not near genes chr3L 5096268 intergenic not near genes chr3L 5096399 intergenic not near genes chr3L_5_5095001 chr3L_5095001 RAL-852 408 chr3L 5104490 5104511 chr3L 5124623 5124645 4 20134 1.0 1.0 1.0 2.0 20155 chr3L 5104490 intergenic not near genes chr3L 5114568 intergenic not near genes chr3L 5124645 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-852 409 chr3L 5164637 5164669 chr3L 5164713 5164745 8 74 1.5 1.0 1.2 3.6 108 chr3L 5164637 intron shep - chr3L 5164691 intron shep - chr3L 5164745 intron shep - chr3L_8_5160001 chr3L_5160001 RAL-852 410 chr3L 5250076 5250081 chr3L 5250153 5250158 4 78 0.0 0.0 0.0 4.0 82 chr3L 5250076 intron shep - chr3L 5250117 intron shep - chr3L 5250158 intron shep - chr3L_4_5250001 chr3L_5250001 RAL-852 411 chr3L 5520503 5520528 chr3L 5520587 5520612 6 84 0.0 0.0 0.0 6.0 109 chr3L 5520503 intron Lkr - chr3L 5520558 intron Lkr - chr3L 5520612 intron Lkr - chr3L_6_5520001 chr3L_5520001 RAL-852 412 chr3L 5521508 5521521 chr3L 5521597 5521610 4 89 1.0 1.0 1.0 2.0 102 chr3L 5521508 intron Lkr - chr3L 5521559 intron Lkr - chr3L 5521610 intron Lkr - chr3L_4_5520001 chr3L_5520001 RAL-852 413 chr3L 5667629 5667642 chr3L 5667708 5667722 8 80 1.0 0.0 0.5 5.3 93 chr3L 5667629 intron sif + chr3L 5667676 intron sif + chr3L 5667722 intron sif + chr3L_8_5665001 chr3L_5665001 RAL-852 414 chr3L 5727178 5727192 chr3L 5727651 5727665 4 472 0.0 0.0 0.0 4.0 487 chr3L 5727178 intron sif + chr3L 5727422 intron sif + chr3L 5727665 intron sif + chr3L_4_5725001 chr3L_5725001 RAL-852 415 chr3L 5855570 5855572 chr3L 22908066 22908067 4 17052496 0.0 11.0 5.5 0.6 17052497 chr3L 5855570 intergenic not near genes chr3L 14381818 intergenic CG43120 + chr3L 22908067 intergenic not near genes chr3L_4_14380001 chr3L_14380001 RAL-852 416 chr3L 5910033 5910057 chr3L 5910274 5910298 pogo 5 241 1.5 1.5 1.5 2.0 265 chr3L 5910033 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910298 intron CG13288 + chr3L_5_5910001 chr3L_5910001 RAL-852 417 chr3L 6001682 6001714 chr3L 6004382 6004414 jockey 4 2700 2.0 0.0 1.0 2.0 2732 chr3L 6001682 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004414 intron PVRAP + chr3L_4_6000001 chr3L_6000001 RAL-852 418 chr3L 6052656 6052678 chr3L 6052741 6052763 4 85 2.0 8.0 5.0 0.7 107 chr3L 6052656 exon Jon65Aii + chr3L 6052710 intron Jon65Aii + chr3L 6052763 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-852 419 chr3L 6116701 6116727 chr3L 6116785 6116811 4 84 1.0 1.0 1.0 2.0 110 chr3L 6116701 intron Ets65A + chr3L 6116756 intron Ets65A + chr3L 6116811 intron Ets65A + chr3L_4_6115001 chr3L_6115001 RAL-852 420 chr3L 6220917 6220947 chr3L 6230069 6230096 roo 9 9152 1.0 0.5 0.8 5.0 9179 chr3L 6220917 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230096 intergenic not near genes chr3L_9_6225001 chr3L_6225001 RAL-852 421 chr3L 6267315 6267329 chr3L 6267402 6267415 4 87 2.0 2.5 2.2 1.2 100 chr3L 6267315 intergenic not near genes chr3L 6267365 intergenic not near genes chr3L 6267415 intergenic not near genes chr3L_4_6265001 chr3L_6265001 RAL-852 422 chr3L 6528859 6528875 chr3L 6528994 6529009 5 135 2.5 0.5 1.5 2.0 150 chr3L 6528859 intron sfl + chr3L 6528934 intron sfl + chr3L 6529009 intron sfl + chr3L_5_6525001 chr3L_6525001 RAL-852 423 chr3L 6635884 6635901 chr3L 6635975 6635992 5 91 0.0 0.5 0.2 4.2 108 chr3L 6635884 intergenic not near genes chr3L 6635938 intergenic not near genes chr3L 6635992 intergenic not near genes chr3L_5_6635001 chr3L_6635001 RAL-852 424 chr3L 6652079 6652110 chr3L 6652156 6652187 7 78 0.0 2.5 1.2 3.2 108 chr3L 6652079 intergenic not near genes chr3L 6652133 intergenic not near genes chr3L 6652187 intergenic not near genes chr3L_7_6650001 chr3L_6650001 RAL-852 425 chr3L 6675748 6675772 chr3L 6675893 6675917 7 145 0.5 0.5 0.5 4.7 169 chr3L 6675748 intergenic not near genes chr3L 6675832 intergenic not near genes chr3L 6675917 intergenic not near genes chr3L_7_6675001 chr3L_6675001 RAL-852 426 chr3L 6694259 6694275 chr3L 6694341 6694357 6 83 3.0 0.0 1.5 2.4 98 chr3L 6694259 intron SP1173 - chr3L 6694308 intron SP1173 - chr3L 6694357 intron SP1173 - chr3L_6_6690001 chr3L_6690001 RAL-852 427 chr3L 7079607 7079635 chr3L 7079684 7079712 4 77 0.0 0.0 0.0 4.0 105 chr3L 7079607 intergenic not near genes chr3L 7079660 intergenic not near genes chr3L 7079712 intergenic not near genes chr3L_4_7075001 chr3L_7075001 RAL-852 428 chr3L 7112595 7112615 chr3L 7112681 7112702 5 87 0.0 1.0 0.5 3.3 107 chr3L 7112595 intron form3 + chr3L 7112648 intron form3 + chr3L 7112702 intron form3 + chr3L_5_7110001 chr3L_7110001 RAL-852 429 chr3L 7198633 7198649 chr3L 7198733 7198750 5 100 0.5 1.0 0.8 2.8 117 chr3L 7198633 intergenic not near genes chr3L 7198692 intergenic not near genes chr3L 7198750 intergenic not near genes chr3L_5_7195001 chr3L_7195001 RAL-852 430 chr3L 7209389 7209406 chr3L 7209470 7209487 4 80 2.0 1.5 1.8 1.4 98 chr3L 7209389 intergenic not near genes chr3L 7209438 intergenic not near genes chr3L 7209487 intergenic not near genes chr3L_4_7205001 chr3L_7205001 RAL-852 431 chr3L 7225542 7225572 chr3L 7225635 7225665 9 92 3.0 1.5 2.2 2.8 123 chr3L 7225542 intergenic not near genes chr3L 7225604 intergenic not near genes chr3L 7225665 intergenic not near genes chr3L_9_7225001 chr3L_7225001 RAL-852 432 chr3L 7285453 7285478 chr3L 7285531 7285556 4 78 3.0 1.5 2.2 1.2 103 chr3L 7285453 intron unc-13-4A - chr3L 7285504 intron unc-13-4A - chr3L 7285556 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-852 433 chr3L 7375925 7375943 chr3L 7376000 7376019 4 76 0.5 1.0 0.8 2.2 94 chr3L 7375925 intron SMSr - chr3L 7375972 intron SMSr - chr3L 7376019 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-852 434 chr3L 7475226 7475251 chr3L 7475306 7475331 5 79 1.5 1.0 1.2 2.3 105 chr3L 7475226 intergenic CG43292 + chr3L 7475278 intergenic CG43292 + chr3L 7475331 intergenic CG43292 + chr3L_5_7475001 chr3L_7475001 RAL-852 435 chr3L 7485837 7485856 chr3L 7486172 7486191 4 335 1.0 3.0 2.0 1.3 354 chr3L 7485837 intergenic mthl6 + chr3L 7486014 5` UTR mthl6 + chr3L 7486191 exon mthl6 + chr3L_4_7485001 chr3L_7485001 RAL-852 436 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 4.0 10.0 7.0 0.5 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-852 437 chr3L 7801333 7801357 chr3L 7801426 7801450 5 93 2.5 0.0 1.2 2.3 117 chr3L 7801333 intron CG32369 - chr3L 7801392 intron CG32369 - chr3L 7801450 intron CG32369 - chr3L_5_7800001 chr3L_7800001 RAL-852 438 chr3L 7971850 7971880 chr3L 7971930 7971960 6 80 1.0 0.0 0.5 4.0 110 chr3L 7971850 3` UTR RNaseX25 + chr3L 7971905 3` UTR RNaseX25 + chr3L 7971960 3` UTR RNaseX25 + chr3L_6_7970001 chr3L_7970001 RAL-852 439 chr3L 7995958 7995976 chr3L 7996066 7996080 4 107 1.0 0.0 0.5 2.7 122 chr3L 7995958 intron nmo + chr3L 7996019 intron nmo + chr3L 7996080 intron nmo + chr3L_4_7995001 chr3L_7995001 RAL-852 440 chr3L 8075365 8075389 chr3L 8075451 8075475 4 86 1.0 0.5 0.8 2.2 110 chr3L 8075365 intron Ect4 + chr3L 8075420 intron Ect4 + chr3L 8075475 intron Ect4 + chr3L_4_8075001 chr3L_8075001 RAL-852 441 chr3L 8295799 8295817 chr3L 8295957 8295975 4 158 0.5 2.0 1.2 1.8 176 chr3L 8295799 intergenic CG7201 - chr3L 8295887 intergenic not near genes chr3L 8295975 intergenic not near genes chr3L_4_8295001 chr3L_8295001 RAL-852 442 chr3L 8317596 8317596 chr3L 22908066 22908067 11 14590470 0.0 11.0 5.5 1.7 14590471 chr3L 8317596 intergenic not near genes chr3L 15612832 intergenic CG13449 -,comm3 - chr3L 22908067 intergenic not near genes chr3L_11_15610001 chr3L_15610001 RAL-852 443 chr3L 8481784 8481802 chr3L 8490940 8490960 roo 5 9158 1.0 3.0 2.0 1.7 9176 chr3L 8481784 intron CG43163 - chr3L 8486372 intron CG43163 - chr3L 8490960 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-852 444 chr3L 8498308 8498325 chr3L 8505775 8505792 blood 4 7467 0.0 0.0 0.0 4.0 7484 chr3L 8498308 intron CG43163 - chr3L 8502050 intron CG43163 - chr3L 8505792 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-852 445 chr3L 8950573 8950583 chr3L 8950666 8950677 5 93 1.5 2.5 2.0 1.7 104 chr3L 8950573 intron,intron CG43783 -,orb2 - chr3L 8950625 intron,intron CG43783 -,orb2 - chr3L 8950677 intron,intron CG43783 -,orb2 - chr3L_5_8950001 chr3L_8950001 RAL-852 446 chr3L 9086910 9086931 chr3L 9086991 9087014 6 82 3.0 2.5 2.8 1.6 104 chr3L 9086910 exon Tequila + chr3L 9086962 exon Tequila + chr3L 9087014 exon Tequila + chr3L_6_9085001 chr3L_9085001 RAL-852 447 chr3L 9091167 9091198 chr3L 9091244 9091274 5 77 0.5 2.0 1.2 2.3 107 chr3L 9091167 exon Tequila + chr3L 9091220 exon Tequila + chr3L 9091274 exon Tequila + chr3L_5_9090001 chr3L_9090001 RAL-852 448 chr3L 9129440 9129466 chr3L 9129553 9129578 8 113 1.5 0.5 1.0 4.0 138 chr3L 9129440 intron bol - chr3L 9129509 intron bol - chr3L 9129578 intron bol - chr3L_8_9125001 chr3L_9125001 RAL-852 449 chr3L 9130562 9130581 chr3L 9134323 9134341 412 5 3760 2.0 1.0 1.5 2.0 3779 chr3L 9130562 intergenic bol - chr3L 9132452 intergenic not near genes chr3L 9134341 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-852 450 chr3L 9164699 9164726 chr3L 9166166 9166192 hobo 4 1466 1.5 1.5 1.5 1.6 1493 chr3L 9164699 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166192 intron Rdl - chr3L_4_9165001 chr3L_9165001 RAL-852 451 chr3L 9191878 9191896 chr3L 9191966 9191986 6 90 2.5 1.0 1.8 2.1 108 chr3L 9191878 intergenic not near genes chr3L 9191932 intergenic not near genes chr3L 9191986 intergenic not near genes chr3L_6_9190001 chr3L_9190001 RAL-852 452 chr3L 9242142 9242162 chr3L 9242231 9242251 7 89 1.5 1.5 1.5 2.8 109 chr3L 9242142 intergenic not near genes chr3L 9242196 intergenic not near genes chr3L 9242251 intergenic not near genes chr3L_7_9240001 chr3L_9240001 RAL-852 453 chr3L 9307796 9307796 chr3L 22908066 22908067 4 13600270 9.0 11.0 10.0 0.4 13600271 chr3L 9307796 intergenic not near genes chr3L 16107932 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_4_16105001 chr3L_16105001 RAL-852 454 chr3L 9559403 9559409 chr3L 9559533 9559543 4 134 1.5 4.5 3.0 1.0 140 chr3L 9559403 intron CG42673 + chr3L 9559473 intron CG42673 + chr3L 9559543 intron CG42673 + chr3L_4_9555001 chr3L_9555001 RAL-852 455 chr3L 9571909 9571935 chr3L 9572257 9572283 jockey 7 348 0.5 2.5 1.5 2.8 374 chr3L 9571909 intron CG42673 + chr3L 9572096 intron CG42673 + chr3L 9572283 intron CG42673 + chr3L_7_9570001 chr3L_9570001 RAL-852 456 chr3L 9635581 9635607 chr3L 9635658 9635684 8 77 0.0 0.0 0.0 8.0 103 chr3L 9635581 intron fry - chr3L 9635632 intron fry - chr3L 9635684 exon fry - chr3L_8_9635001 chr3L_9635001 RAL-852 457 chr3L 9918880 9918905 chr3L 9918975 9918998 8 95 2.0 1.0 1.5 3.2 118 chr3L 9918880 intron CG34356 + chr3L 9918939 intron CG34356 + chr3L 9918998 intron CG34356 + chr3L_8_9915001 chr3L_9915001 RAL-852 458 chr3L 10003154 10003181 chr3L 10003249 10003278 5 97 1.5 1.5 1.5 2.0 124 chr3L 10003154 intron dpr6 + chr3L 10003216 intron dpr6 + chr3L 10003278 intron dpr6 + chr3L_5_10000001 chr3L_10000001 RAL-852 459 chr3L 10127741 10127773 chr3L 10127818 10127848 10 76 1.5 0.0 0.8 5.6 107 chr3L 10127741 intron dpr6 + chr3L 10127794 intron dpr6 + chr3L 10127848 intron dpr6 + chr3L_10_10125001 chr3L_10125001 RAL-852 460 chr3L 10310350 10310364 chr3L 10310447 10310460 5 97 4.0 1.5 2.8 1.3 110 chr3L 10310350 intergenic not near genes chr3L 10310405 intergenic not near genes chr3L 10310460 intergenic not near genes chr3L_5_10310001 chr3L_10310001 RAL-852 461 chr3L 10402140 10402171 chr3L 10402218 10402251 6 78 1.5 1.5 1.5 2.4 111 chr3L 10402140 intergenic not near genes chr3L 10402196 intergenic not near genes chr3L 10402251 intergenic not near genes chr3L_6_10400001 chr3L_10400001 RAL-852 462 chr3L 10450696 10450706 chr3L 10450776 10450785 4 80 0.0 2.0 1.0 2.0 89 chr3L 10450696 intergenic not near genes chr3L 10450740 intergenic not near genes chr3L 10450785 intergenic not near genes chr3L_4_10450001 chr3L_10450001 RAL-852 463 chr3L 10658078 10658098 chr3L 10658154 10658175 7 76 0.0 0.5 0.2 5.8 97 chr3L 10658078 intron CG32066 - chr3L 10658126 intron CG32066 - chr3L 10658175 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-852 464 chr3L 11087063 11087080 chr3L 11088850 11088869 S-element 4 1788 0.5 1.0 0.8 2.2 1806 chr3L 11087063 intron JIL-1 - chr3L 11087966 intron JIL-1 - chr3L 11088869 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-852 465 chr3L 11107649 11107673 chr3L 11107934 11107959 4 286 1.5 1.5 1.5 1.6 310 chr3L 11107649 intergenic CG32073 - chr3L 11107804 intergenic CG32073 -,CG12522 + chr3L 11107959 intergenic CG12522 +,CG32073 - chr3L_4_11105001 chr3L_11105001 RAL-852 466 chr3L 11277465 11277475 chr3L 11278456 11278470 Rt1a 4 994 2.0 2.5 2.2 1.2 1005 chr3L 11277465 intergenic not near genes chr3L 11277968 intergenic not near genes chr3L 11278470 intergenic not near genes chr3L_4_11275001 chr3L_11275001 RAL-852 467 chr3L 11454227 11454240 chr3L 11454308 11454322 4 82 1.0 1.5 1.2 1.8 95 chr3L 11454227 intergenic not near genes chr3L 11454274 intergenic not near genes chr3L 11454322 intergenic not near genes chr3L_4_11450001 chr3L_11450001 RAL-852 468 chr3L 11564799 11564813 chr3L 11572424 11572438 412 4 7625 1.5 3.0 2.2 1.2 7639 chr3L 11564799 exon CG33267 + chr3L 11568618 intron CG33267 + chr3L 11572438 exon CG33267 + chr3L_4_11565001 chr3L_11565001 RAL-852 469 chr3L 11579555 11579581 chr3L 11579661 11579687 6 106 1.0 3.5 2.2 1.9 132 chr3L 11579555 intergenic CG43390 - chr3L 11579621 intergenic CG43390 - chr3L 11579687 intergenic CG43390 - chr3L_6_11575001 chr3L_11575001 RAL-852 470 chr3L 11666262 11666284 chr3L 11666416 11666435 4 152 0.0 1.0 0.5 2.7 173 chr3L 11666262 intron CG32085 - chr3L 11666348 intron CG32085 - chr3L 11666435 intron CG32085 - chr3L_4_11665001 chr3L_11665001 RAL-852 471 chr3L 11723088 11723115 chr3L 11727883 11727910 Doc 6 4795 2.0 0.5 1.2 2.7 4822 chr3L 11723088 3` UTR Bmcp + chr3L 11725499 intron Bmcp + chr3L 11727910 3` UTR Bmcp + chr3L_6_11725001 chr3L_11725001 RAL-852 472 chr3L 11744011 11744041 chr3L 11744119 11744149 6 108 1.5 0.0 0.8 3.3 138 chr3L 11744011 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_6_11740001 chr3L_11740001 RAL-852 473 chr3L 11756516 11756546 chr3L 11756602 11756632 6 86 1.0 3.0 2.0 2.0 116 chr3L 11756516 intron CG6024 - chr3L 11756574 intron CG6024 - chr3L 11756632 intron CG6024 - chr3L_6_11755001 chr3L_11755001 RAL-852 474 chr3L 11816800 11816813 chr3L 11816901 11816914 5 100 2.5 3.0 2.8 1.3 114 chr3L 11816800 3` UTR CG5946 - chr3L 11816857 3` UTR CG5946 - chr3L 11816914 3` UTR CG5946 - chr3L_5_11815001 chr3L_11815001 RAL-852 475 chr3L 11864561 11864582 chr3L 11865856 11865877 pogo 6 1294 2.0 4.0 3.0 1.5 1316 chr3L 11864561 intron CG44837 - chr3L 11865219 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-852 476 chr3L 12019328 12019345 chr3L 12019441 12019458 4 113 1.5 0.5 1.0 2.0 130 chr3L 12019328 intron rols - chr3L 12019393 intron rols - chr3L 12019458 intron rols - chr3L_4_12015001 chr3L_12015001 RAL-852 477 chr3L 12062603 12062633 chr3L 12062679 12062709 4 76 1.0 0.5 0.8 2.2 106 chr3L 12062603 intron rols - chr3L 12062656 intron rols - chr3L 12062709 intron rols - chr3L_4_12060001 chr3L_12060001 RAL-852 478 chr3L 12089102 12089112 chr3L 12089182 12089192 4 80 0.0 2.0 1.0 2.0 90 chr3L 12089102 3` UTR CG17154 + chr3L 12089147 3` UTR CG17154 + chr3L 12089192 3` UTR CG17154 + chr3L_4_12085001 chr3L_12085001 RAL-852 479 chr3L 12100387 12100408 chr3L 12100489 12100506 4 101 3.0 1.0 2.0 1.3 119 chr3L 12100387 intergenic not near genes chr3L 12100446 intergenic not near genes chr3L 12100506 intergenic not near genes chr3L_4_12100001 chr3L_12100001 RAL-852 480 chr3L 12312493 12312508 chr3L 12312570 12312586 5 78 1.5 2.5 2.0 1.7 93 chr3L 12312493 intergenic not near genes chr3L 12312540 intergenic not near genes chr3L 12312586 intergenic not near genes chr3L_5_12310001 chr3L_12310001 RAL-852 481 chr3L 12369548 12369569 chr3L 12369638 12369659 6 89 0.5 2.0 1.2 2.7 111 chr3L 12369548 intron Ncc69 - chr3L 12369604 intron Ncc69 - chr3L 12369659 intron Ncc69 - chr3L_6_12365001 chr3L_12365001 RAL-852 482 chr3L 12460318 12460344 chr3L 12460395 12460421 4 77 0.0 1.0 0.5 2.7 103 chr3L 12460318 intergenic not near genes chr3L 12460370 intergenic not near genes chr3L 12460421 intergenic not near genes chr3L_4_12460001 chr3L_12460001 RAL-852 483 chr3L 11777678 11777678 chr3L 12638619 12638625 6 860943 8.5 4.0 6.2 0.8 860947 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 12208152 intron app - chr3L 12638625 intron CR32111 + chr3L_6_12205001 chr3L_12205001 RAL-852 484 chr3L 13009862 13009862 chr3L 22908066 22908067 6 9898204 4.0 11.0 7.5 0.7 9898205 chr3L 13009862 intron CG11261 - chr3L 17958964 intron Eip75B - chr3L 22908067 intergenic not near genes chr3L_6_17955001 chr3L_17955001 RAL-852 485 chr3L 13045985 13046022 chr3L 13046152 13046189 7 167 1.0 1.5 1.2 3.2 204 chr3L 13045985 intron Syx13 + chr3L 13046087 intron Syx13 + chr3L 13046189 intron Syx13 + chr3L_7_13045001 chr3L_13045001 RAL-852 486 chr3L 13432297 13432317 chr3L 13432396 13432416 4 99 0.5 1.0 0.8 2.2 119 chr3L 13432297 intron CG10713 - chr3L 13432356 intron CG10713 - chr3L 13432416 intron CG10713 - chr3L_4_13430001 chr3L_13430001 RAL-852 487 chr3L 13525164 13525175 chr3L 13532960 13532969 roo 4 7795 2.5 3.5 3.0 1.0 7805 chr3L 13525164 intergenic not near genes chr3L 13529066 intergenic not near genes chr3L 13532969 intergenic not near genes chr3L_4_13525001 chr3L_13525001 RAL-852 488 chr3L 13535908 13535938 chr3L 13535984 13536012 8 76 1.0 0.0 0.5 5.3 104 chr3L 13535908 intergenic not near genes chr3L 13535960 intergenic not near genes chr3L 13536012 intergenic not near genes chr3L_8_13535001 chr3L_13535001 RAL-852 489 chr3L 13789778 13789791 chr3L 13789860 13789873 4 82 3.0 2.0 2.5 1.1 95 chr3L 13789778 intron bru-3 - chr3L 13789826 intron bru-3 - chr3L 13789873 intron bru-3 - chr3L_4_13785001 chr3L_13785001 RAL-852 490 chr3L 13941628 13941649 chr3L 13941722 13941741 4 93 0.5 1.5 1.0 2.0 113 chr3L 13941628 intron CG32137 + chr3L 13941684 intron CG32137 + chr3L 13941741 intron CG32137 + chr3L_4_13940001 chr3L_13940001 RAL-852 491 chr3L 13994943 13994973 chr3L 13995017 13995050 8 76 2.5 0.5 1.5 3.2 107 chr3L 13994943 exon 26-29-p + chr3L 13994996 exon 26-29-p + chr3L 13995050 exon 26-29-p + chr3L_8_13990001 chr3L_13990001 RAL-852 492 chr3L 14144262 14144282 chr3L 14144338 14144358 4 74 1.0 0.0 0.5 2.7 96 chr3L 14144262 intergenic not near genes chr3L 14144310 intergenic not near genes chr3L 14144358 intergenic not near genes chr3L_4_14140001 chr3L_14140001 RAL-852 493 chr3L 14245571 14245584 chr3L 14245665 14245676 1360 5 93 1.5 2.0 1.8 1.8 105 chr3L 14245571 3` UTR CR44561 - chr3L 14245624 3` UTR CR44561 - chr3L 14245676 3` UTR CR44561 - chr3L_5_14245001 chr3L_14245001 RAL-852 494 chr3L 14295982 14296012 chr3L 14296468 14296497 roo 9 485 2.5 1.5 2.0 3.0 515 chr3L 14295982 intron fz + chr3L 14296240 intron fz + chr3L 14296497 intron fz + chr3L_9_14295001 chr3L_14295001 RAL-852 495 chr3L 14439216 14439245 chr3L 14439378 14439408 4 163 1.0 0.0 0.5 2.7 192 chr3L 14439216 intron bbg - chr3L 14439312 intron bbg - chr3L 14439408 intron bbg - chr3L_4_14435001 chr3L_14435001 RAL-852 496 chr3L 14487621 14487625 chr3L 14487697 14487701 5 75 2.5 0.0 1.2 2.3 80 chr3L 14487621 intron bbg - chr3L 14487661 intron bbg - chr3L 14487701 intron bbg - chr3L_5_14485001 chr3L_14485001 RAL-852 497 chr3L 14514694 14514696 chr3L 22908066 22908066 Stalker2 4 8393371 6.5 11.0 8.8 0.4 8393372 chr3L 14514694 intron bbg - chr3L 18711380 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-852 498 chr3L 14531218 14531244 chr3L 14531331 14531357 4 112 0.0 0.0 0.0 4.0 139 chr3L 14531218 intron bbg - chr3L 14531288 intron bbg - chr3L 14531357 intron bbg - chr3L_4_14530001 chr3L_14530001 RAL-852 499 chr3L 14721181 14721201 chr3L 14723024 14723043 Rt1c 4 1842 2.0 1.0 1.5 1.6 1862 chr3L 14721181 intron ome + chr3L 14722112 intron ome + chr3L 14723043 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-852 500 chr3L 14809414 14809441 chr3L 14809659 14809686 5 245 0.0 2.5 1.2 2.3 272 chr3L 14809414 intron CG17839 + chr3L 14809550 intron CG17839 + chr3L 14809686 intron CG17839 + chr3L_5_14805001 chr3L_14805001 RAL-852 501 chr3L 14893658 14893681 chr3L 14893742 14893766 5 85 1.0 0.0 0.5 3.3 108 chr3L 14893658 intergenic CG34245 - chr3L 14893712 intergenic CG34245 - chr3L 14893766 3` UTR CG34245 - chr3L_5_14890001 chr3L_14890001 RAL-852 502 chr3L 14922116 14922125 chr3L 14922224 14922233 4 108 0.0 2.5 1.2 1.8 117 chr3L 14922116 intron DCX-EMAP + chr3L 14922174 intron DCX-EMAP + chr3L 14922233 intron DCX-EMAP + chr3L_4_14920001 chr3L_14920001 RAL-852 503 chr3L 15085048 15085066 chr3L 15086214 15086232 1360 4 1166 0.5 0.5 0.5 2.7 1184 chr3L 15085048 intron cp309 - chr3L 15085640 intron cp309 - chr3L 15086232 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-852 504 chr3L 15177341 15177353 chr3L 15177426 15177438 4 84 2.0 0.5 1.2 1.8 97 chr3L 15177341 intergenic not near genes chr3L 15177390 intergenic not near genes chr3L 15177438 intergenic not near genes chr3L_4_15175001 chr3L_15175001 RAL-852 505 chr3L 15326315 15326349 chr3L 15326398 15326432 6 83 0.5 0.5 0.5 4.0 117 chr3L 15326315 intergenic not near genes chr3L 15326374 intergenic not near genes chr3L 15326432 intergenic not near genes chr3L_6_15325001 chr3L_15325001 RAL-852 506 chr3L 15358370 15358395 chr3L 15358501 15358526 5 131 1.5 1.0 1.2 2.3 156 chr3L 15358370 intergenic not near genes chr3L 15358448 intergenic not near genes chr3L 15358526 intergenic not near genes chr3L_5_15355001 chr3L_15355001 RAL-852 507 chr3L 15463456 15463493 chr3L 15463546 15463579 5 89 1.0 1.5 1.2 2.3 123 chr3L 15463456 intergenic not near genes chr3L 15463518 intergenic not near genes chr3L 15463579 intergenic not near genes chr3L_5_15460001 chr3L_15460001 RAL-852 508 chr3L 15756880 15756904 chr3L 15756963 15756986 5 82 2.0 0.0 1.0 2.5 106 chr3L 15756880 intergenic not near genes chr3L 15756933 intergenic not near genes chr3L 15756986 intergenic not near genes chr3L_5_15755001 chr3L_15755001 RAL-852 509 chr3L 15899232 15899257 chr3L 15899792 15899823 jockey 4 564 1.0 1.5 1.2 1.8 591 chr3L 15899232 intergenic pHCl - chr3L 15899528 intergenic pHCl - chr3L 15899823 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-852 510 chr3L 15929202 15929227 chr3L 15938349 15938374 roo 7 9147 0.5 1.5 1.0 3.5 9172 chr3L 15929202 intron Pka-C3 - chr3L 15933788 intron Pka-C3 - chr3L 15938374 intron Pka-C3 - chr3L_7_15930001 chr3L_15930001 RAL-852 511 chr3L 16102266 16102295 chr3L 16102351 16102380 10 85 2.5 2.0 2.2 3.1 114 chr3L 16102266 exon CG5414 + chr3L 16102323 intron CG5414 + chr3L 16102380 intron CG5414 + chr3L_10_16100001 chr3L_16100001 RAL-852 512 chr3L 16184103 16184141 chr3L 16188922 16188957 X-element 9 4818 1.5 0.0 0.8 5.0 4854 chr3L 16184103 intergenic not near genes chr3L 16186530 intergenic not near genes chr3L 16188957 intergenic not near genes chr3L_9_16185001 chr3L_16185001 RAL-852 513 chr3L 16241896 16241919 chr3L 16241980 16242003 4 84 2.5 1.5 2.0 1.3 107 chr3L 16241896 intergenic not near genes chr3L 16241950 intergenic not near genes chr3L 16242003 intergenic not near genes chr3L_4_16240001 chr3L_16240001 RAL-852 514 chr3L 16443850 16443877 chr3L 16446188 16446217 Doc 7 2338 1.5 2.0 1.8 2.5 2367 chr3L 16443850 intron,intron CG33158 +,dsx-c73A - chr3L 16445034 intron,intron CG33158 +,dsx-c73A - chr3L 16446217 intron,intron CG33158 +,dsx-c73A - chr3L_7_16445001 chr3L_16445001 RAL-852 515 chr3L 16503645 16503654 chr3L 16503718 16503728 4 75 0.5 0.5 0.5 2.7 83 chr3L 16503645 intron CG43373 - chr3L 16503686 intron CG43373 - chr3L 16503728 intron CG43373 - chr3L_4_16500001 chr3L_16500001 RAL-852 516 chr3L 16540054 16540088 chr3L 16540142 16540176 4 88 0.5 3.5 2.0 1.3 122 chr3L 16540054 intron CG43373 - chr3L 16540115 intron CG43373 - chr3L 16540176 intron CG43373 - chr3L_4_16540001 chr3L_16540001 RAL-852 517 chr3L 16610688 16610716 chr3L 16610773 16610801 5 85 2.0 1.5 1.8 1.8 113 chr3L 16610688 3` UTR Su(P) - chr3L 16610744 exon Su(P) - chr3L 16610801 exon Su(P) - chr3L_5_16610001 chr3L_16610001 RAL-852 518 chr3L 16616508 16616543 chr3L 16621836 16621871 297 12 5328 1.0 0.5 0.8 6.7 5363 chr3L 16616508 3` UTR Abl - chr3L 16619190 3` UTR Abl - chr3L 16621871 3` UTR Abl - chr3L_12_16615001 chr3L_16615001 RAL-852 519 chr3L 16786974 16786993 chr3L 16787050 16787069 5 76 0.0 1.0 0.5 3.3 95 chr3L 16786974 intergenic Int6 - chr3L 16787022 intergenic Int6 - chr3L 16787069 intergenic Int6 - chr3L_5_16785001 chr3L_16785001 RAL-852 520 chr3L 16802429 16802463 chr3L 16803617 16803649 9 1186 8.5 11.5 10.0 0.8 1220 chr3L 16802429 intron CG9674 - chr3L 16803039 intron CG9674 - chr3L 16803649 intron CG9674 - chr3L_9_16800001 chr3L_16800001 RAL-852 521 chr3L 16807809 16808054 chr3L 16807888 16808130 5 78 1.5 0.0 0.8 2.8 321 chr3L 16807809 intron nudC + chr3L 16807970 intron nudC + chr3L 16808130 intron nudC + chr3L_5_16805001 chr3L_16805001 RAL-852 522 chr3L 17085003 17085032 chr3L 17094152 17094181 roo 6 9149 1.0 1.0 1.0 3.0 9178 chr3L 17085003 intron Rbp6 - chr3L 17089592 intron Rbp6 - chr3L 17094181 intron Rbp6 - chr3L_6_17085001 chr3L_17085001 RAL-852 523 chr3L 17120655 17120670 chr3L 17120731 17120746 5 76 1.5 1.5 1.5 2.0 91 chr3L 17120655 intron Rbp6 - chr3L 17120700 intron Rbp6 - chr3L 17120746 intron Rbp6 - chr3L_5_17120001 chr3L_17120001 RAL-852 524 chr3L 17510745 17510763 chr3L 17510829 17510847 4 84 1.5 1.5 1.5 1.6 102 chr3L 17510745 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510847 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-852 525 chr3L 17535815 17535839 chr3L 17535929 17535946 4 112 0.5 1.5 1.0 2.0 131 chr3L 17535815 intron Nedd4 + chr3L 17535880 intron Nedd4 + chr3L 17535946 intron Nedd4 + chr3L_4_17535001 chr3L_17535001 RAL-852 526 chr3L 17758033 17758065 chr3L 17758109 17758137 8 75 1.5 1.5 1.5 3.2 104 chr3L 17758033 intron,intron Adgf-A -,Msi - chr3L 17758085 intron,intron Adgf-A -,Msi - chr3L 17758137 intron,intron,5` UTR Adgf-A -,Msi -,CG32182 + chr3L_8_17755001 chr3L_17755001 RAL-852 527 chr3L 17837623 17837654 chr3L 17837711 17837742 9 88 1.0 1.5 1.2 4.1 119 chr3L 17837623 exon Grd + chr3L 17837682 intron Grd + chr3L 17837742 exon Grd + chr3L_9_17835001 chr3L_17835001 RAL-852 528 chr3L 18006220 18006245 chr3L 18006344 18006369 4 124 1.5 2.5 2.0 1.3 149 chr3L 18006220 intron Eip75B - chr3L 18006294 intron Eip75B - chr3L 18006369 intron Eip75B - chr3L_4_18005001 chr3L_18005001 RAL-852 529 chr3L 18045026 18045047 chr3L 18045102 18045123 5 75 0.0 2.5 1.2 2.3 97 chr3L 18045026 intron Eip75B - chr3L 18045074 intron Eip75B - chr3L 18045123 intron Eip75B - chr3L_5_18045001 chr3L_18045001 RAL-852 530 chr3L 18047714 18047739 chr3L 18056771 18056793 roo 4 9056 0.5 1.5 1.0 2.0 9079 chr3L 18047714 intron Eip75B - chr3L 18052254 intron Eip75B - chr3L 18056793 intron Eip75B - chr3L_4_18050001 chr3L_18050001 RAL-852 531 chr3L 18134621 18134645 chr3L 18134758 18134782 4 137 0.5 1.0 0.8 2.2 161 chr3L 18134621 intergenic not near genes chr3L 18134702 intergenic not near genes chr3L 18134782 intergenic not near genes chr3L_4_18130001 chr3L_18130001 RAL-852 532 chr3L 18408733 18408754 chr3L 18408819 18408840 5 86 1.0 1.5 1.2 2.3 107 chr3L 18408733 intergenic not near genes chr3L 18408786 intergenic not near genes chr3L 18408840 intergenic not near genes chr3L_5_18405001 chr3L_18405001 RAL-852 533 chr3L 18528629 18528658 chr3L 18537790 18537819 roo 7 9161 1.5 1.5 1.5 2.8 9190 chr3L 18528629 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537819 intergenic not near genes chr3L_7_18530001 chr3L_18530001 RAL-852 534 chr3L 18615915 18615935 chr3L 18616013 18616032 8 98 0.0 1.5 0.8 4.4 117 chr3L 18615915 intron,intron CG13380 -,CG4174 - chr3L 18615974 intron,intron CG13380 -,CG4174 - chr3L 18616032 3` UTR,5` UTR CG13380 -,CG4174 - chr3L_8_18615001 chr3L_18615001 RAL-852 535 chr3L 18645304 18645314 chr3L 18645403 18645413 4 99 0.5 1.0 0.8 2.2 109 chr3L 18645304 intron MYPT-75D + chr3L 18645358 intron MYPT-75D + chr3L 18645413 intron MYPT-75D + chr3L_4_18645001 chr3L_18645001 RAL-852 536 chr3L 18772418 18772437 chr3L 18781099 18781118 roo 5 8681 0.0 0.5 0.2 4.2 8700 chr3L 18772418 intron ftz-f1 - chr3L 18776768 intron ftz-f1 - chr3L 18781118 intron ftz-f1 - chr3L_5_18775001 chr3L_18775001 RAL-852 537 chr3L 18941176 18941208 chr3L 18941287 18941319 5 111 2.5 1.5 2.0 1.7 143 chr3L 18941176 intron CG32204 - chr3L 18941248 intron CG32204 - chr3L 18941319 intron CG32204 - chr3L_5_18940001 chr3L_18940001 RAL-852 538 chr3L 18972395 18972412 chr3L 18972470 18972488 5 76 2.0 2.0 2.0 1.7 93 chr3L 18972395 intergenic not near genes chr3L 18972442 intergenic not near genes chr3L 18972488 intergenic not near genes chr3L_5_18970001 chr3L_18970001 RAL-852 539 chr3L 19082036 19082058 chr3L 19082138 19082160 5 101 3.0 0.5 1.8 1.8 124 chr3L 19082036 intron Mkp3 - chr3L 19082098 intron Mkp3 - chr3L 19082160 intron Mkp3 - chr3L_5_19080001 chr3L_19080001 RAL-852 540 chr3L 19100459 19100484 chr3L 19101122 19101147 5 663 6.0 11.0 8.5 0.5 688 chr3L 19100459 intergenic Gem2 - chr3L 19100803 intergenic Gem2 - chr3L 19101147 intergenic not near genes chr3L_5_19100001 chr3L_19100001 RAL-852 541 chr3L 19131683 19131703 chr3L 19131780 19131799 6 96 2.5 2.5 2.5 1.7 116 chr3L 19131683 intron CG14082 - chr3L 19131741 intron CG14082 - chr3L 19131799 intron CG14082 - chr3L_6_19130001 chr3L_19130001 RAL-852 542 chr3L 19187314 19187340 chr3L 19187448 19187473 7 134 1.5 1.5 1.5 2.8 159 chr3L 19187314 intron fz2 - chr3L 19187394 intron fz2 - chr3L 19187473 intron fz2 - chr3L_7_19185001 chr3L_19185001 RAL-852 543 chr3L 19208057 19208088 chr3L 19209431 19209462 Doc 6 1372 1.0 0.5 0.8 3.3 1405 chr3L 19208057 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209462 intron fz2 - chr3L_6_19205001 chr3L_19205001 RAL-852 544 chr3L 19220633 19220634 chr3L 22908067 22908067 4 3687434 6.5 11.0 8.8 0.4 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-852 545 chr3L 19262210 19262237 chr3L 19262292 19262319 7 82 0.5 2.5 1.5 2.8 109 chr3L 19262210 3` UTR Bet1 + chr3L 19262264 3` UTR,3` UTR Bet1 +,Max - chr3L 19262319 3` UTR,3` UTR Bet1 +,Max - chr3L_7_19260001 chr3L_19260001 RAL-852 546 chr3L 19527924 19527953 chr3L 19528003 19528032 6 79 1.0 0.5 0.8 3.3 108 chr3L 19527924 intergenic not near genes chr3L 19527978 intergenic not near genes chr3L 19528032 intergenic not near genes chr3L_6_19525001 chr3L_19525001 RAL-852 547 chr3L 19781200 19781225 chr3L 19781290 19781315 5 90 0.5 0.0 0.2 4.2 115 chr3L 19781200 intron,intron CG42637 -,Gyc76C - chr3L 19781258 intron,intron CG42637 -,Gyc76C - chr3L 19781315 intron,intron CG42637 -,Gyc76C - chr3L_5_19780001 chr3L_19780001 RAL-852 548 chr3L 19792362 19792370 chr3L 19792457 19792465 4 95 2.0 0.0 1.0 2.0 103 chr3L 19792362 intron,intron CG42637 -,Gyc76C - chr3L 19792414 intron,intron CG42637 -,Gyc76C - chr3L 19792465 intron,intron CG42637 -,Gyc76C - chr3L_4_19790001 chr3L_19790001 RAL-852 549 chr3L 19949761 19949782 chr3L 19949839 19949860 4 78 2.5 0.5 1.5 1.6 99 chr3L 19949761 intron Ac76E + chr3L 19949810 intron Ac76E + chr3L 19949860 intron Ac76E + chr3L_4_19945001 chr3L_19945001 RAL-852 550 chr3L 19961262 19961377 chr3L 19961338 19961453 8 78 0.0 0.0 0.0 8.0 191 chr3L 19961262 intron Ac76E + chr3L 19961358 intron Ac76E + chr3L 19961453 intron Ac76E + chr3L_8_19960001 chr3L_19960001 RAL-852 551 chr3L 19981207 19981221 chr3L 19981287 19981301 4 80 2.0 1.0 1.5 1.6 94 chr3L 19981207 intergenic CG17732 + chr3L 19981254 intergenic CG17732 + chr3L 19981301 intergenic CG17732 + chr3L_4_19980001 chr3L_19980001 RAL-852 552 chr3L 20257332 20257357 chr3L 20258452 20258477 pogo 4 1120 1.5 2.5 2.0 1.3 1145 chr3L 20257332 intron rdgC + chr3L 20257904 intron rdgC + chr3L 20258477 intron rdgC + chr3L_4_20255001 chr3L_20255001 RAL-852 553 chr3L 20283676 20283708 chr3L 20283760 20283791 4 84 0.5 1.0 0.8 2.2 115 chr3L 20283676 intron gogo - chr3L 20283734 intron gogo - chr3L 20283791 intron gogo - chr3L_4_20280001 chr3L_20280001 RAL-852 554 chr3L 20345605 20345640 chr3L 20345686 20345720 5 81 2.0 1.5 1.8 1.8 115 chr3L 20345605 intergenic Rbbp5 - chr3L 20345662 intergenic Rbbp5 - chr3L 20345720 intergenic Rbbp5 - chr3L_5_20345001 chr3L_20345001 RAL-852 555 chr3L 20476759 20476785 chr3L 20484358 20484384 springer 6 7599 0.5 2.0 1.2 2.7 7625 chr3L 20476759 3` UTR isoQC + chr3L 20480572 intergenic not near genes chr3L 20484384 3` UTR ZnT77C - chr3L_6_20480001 chr3L_20480001 RAL-852 556 chr3L 20913755 20913779 chr3L 20913837 20913861 7 81 0.5 2.0 1.2 3.2 106 chr3L 20913755 intergenic CR43930 - chr3L 20913808 intergenic CR43930 - chr3L 20913861 intergenic CR43930 - chr3L_7_20910001 chr3L_20910001 RAL-852 557 chr3L 21151862 21151895 chr3L 21156946 21156979 flea 7 5084 0.5 0.5 0.5 4.7 5117 chr3L 21151862 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21156979 intron Ac78C - chr3L_7_21150001 chr3L_21150001 RAL-852 558 chr3L 21749317 21749344 chr3L 21754477 21754504 Doc 4 5160 1.5 1.0 1.2 1.8 5187 chr3L 21749317 intron Syn1 - chr3L 21751910 intron Syn1 - chr3L 21754504 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-852 559 chr3L 21794275 21794303 chr3L 21794391 21794419 5 117 1.0 1.5 1.2 2.3 144 chr3L 21794275 intergenic not near genes chr3L 21794347 intergenic not near genes chr3L 21794419 intergenic not near genes chr3L_5_21790001 chr3L_21790001 RAL-852 560 chr3L 21872493 21872524 chr3L 21872723 21872754 4 230 1.5 2.0 1.8 1.4 261 chr3L 21872493 intron mub + chr3L 21872624 intron mub + chr3L 21872754 intron mub + chr3L_4_21870001 chr3L_21870001 RAL-852 561 chr3L 21891150 21891176 chr3L 21891259 21891284 9 109 2.5 1.5 2.0 3.0 134 chr3L 21891150 intron mub + chr3L 21891217 intron mub + chr3L 21891284 intron mub + chr3L_9_21890001 chr3L_21890001 RAL-852 562 chr3L 21905489 21905508 chr3L 21905587 21905610 4 101 1.5 1.5 1.5 1.6 121 chr3L 21905489 intron mub + chr3L 21905550 intron mub + chr3L 21905610 intron mub + chr3L_4_21905001 chr3L_21905001 RAL-852 563 chr3L 22033693 22033714 chr3L 22033771 22033792 4 78 2.5 1.5 2.0 1.3 99 chr3L 22033693 intergenic not near genes chr3L 22033742 intergenic not near genes chr3L 22033792 intergenic not near genes chr3L_4_22030001 chr3L_22030001 RAL-852 564 chr3L 22232576 22232594 chr3L 22232679 22232697 4 103 1.5 0.0 0.8 2.2 121 chr3L 22232576 intron olf413 + chr3L 22232636 intron olf413 + chr3L 22232697 intron olf413 + chr3L_4_22230001 chr3L_22230001 RAL-852 565 chr3L 22255900 22255936 chr3L 22255979 22256016 11 80 2.0 1.5 1.8 3.9 116 chr3L 22255900 intergenic not near genes chr3L 22255958 intergenic not near genes chr3L 22256016 intergenic not near genes chr3L_11_22255001 chr3L_22255001 RAL-852 566 chr3L 22270010 22270011 chr3L 22908066 22908066 4 638056 3.5 11.0 7.2 0.5 638056 chr3L 22270010 intron Csp + chr3L 22589038 intron CG14459 - chr3L 22908066 intergenic not near genes chr3L_4_22585001 chr3L_22585001 RAL-852 567 chr3L 22358394 22358411 chr3L 22358480 22358497 5 86 3.5 5.0 4.2 1.0 103 chr3L 22358394 intron Ten-m - chr3L 22358446 intron Ten-m - chr3L 22358497 intron Ten-m - chr3L_5_22355001 chr3L_22355001 RAL-852 568 chr3L 22413877 22413896 chr3L 22413957 22413979 4 83 0.0 2.5 1.2 1.8 102 chr3L 22413877 intergenic not near genes chr3L 22413928 intergenic not near genes chr3L 22413979 intergenic not near genes chr3L_4_22410001 chr3L_22410001 RAL-852 569 chr3L 22475981 22476006 chr3L 22476317 22476342 5 336 1.0 1.0 1.0 2.5 361 chr3L 22475981 intergenic CG11425 + chr3L 22476162 intergenic CG11425 + chr3L 22476342 intergenic not near genes chr3L_5_22475001 chr3L_22475001 RAL-852 570 chr3L 22501832 22501857 chr3L 22501913 22501938 5 80 1.5 1.5 1.5 2.0 106 chr3L 22501832 exon CG43312 + chr3L 22501885 exon CG43312 + chr3L 22501938 exon CG43312 + chr3L_5_22500001 chr3L_22500001 RAL-852 571 chr3L 22577638 22577651 chr3L 22582426 22582439 Doc 4 4788 1.0 4.0 2.5 1.1 4801 chr3L 22577638 intergenic not near genes chr3L 22580038 intergenic not near genes chr3L 22582439 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-852 572 chr3L 22617195 22617215 chr3L 22624647 22624667 blood 4 7452 1.5 3.0 2.2 1.2 7472 chr3L 22617195 intron CG14459 - chr3L 22620931 intron CG14459 - chr3L 22624667 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-852 573 chr3L 22865988 22866007 chr3L 22867121 22867140 Doc 4 1133 2.5 1.0 1.8 1.4 1152 chr3L 22865988 intron CG33170 + chr3L 22866564 intron CG33170 + chr3L 22867140 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-852 574 chr3L 22924952 22924975 chr3L 22925025 22925053 5 76 1.0 0.0 0.5 3.3 101 chr3L 22924952 intergenic not near genes chr3L 22925002 intergenic not near genes chr3L 22925053 intergenic not near genes chr3L_5_22925001 chr3L_22925001 RAL-852 575 chr3L 22989861 22989886 chr3L 22996835 22996860 297 6 6973 1.0 1.0 1.0 3.0 6999 chr3L 22989861 intergenic not near genes chr3L 22993360 intergenic not near genes chr3L 22996860 intergenic not near genes chr3L_6_22990001 chr3L_22990001 RAL-852 576 chr3L 23289706 23289718 chr3L 23290248 23290260 5 542 3.0 2.0 2.5 1.4 554 chr3L 23289706 intergenic not near genes chr3L 23289983 intergenic not near genes chr3L 23290260 intergenic not near genes chr3L_5_23285001 chr3L_23285001 RAL-852 577 chr3L 25464029 25464085 chr3L 25464113 25464182 4 91 1.0 1.0 1.0 2.0 153 chr3L 25464029 intergenic not near genes chr3L 25464106 intergenic not near genes chr3L 25464182 intergenic not near genes chr3L_4_25460001 chr3L_25460001 RAL-852 578 chr3L 25513578 25513608 chr3L 25513657 25513687 4 79 1.5 0.5 1.0 2.0 109 chr3L 25513578 intron CG41343 - chr3L 25513632 intron CG41343 - chr3L 25513687 intron CG41343 - chr3L_4_25510001 chr3L_25510001 RAL-852 579 chr3L 25628500 25628526 chr3L 25633270 25633296 F-element 6 4770 0.5 2.0 1.2 2.7 4796 chr3L 25628500 intron CG41343 - chr3L 25630898 intron CG41343 - chr3L 25633296 intron CG41343 - chr3L_6_25630001 chr3L_25630001 RAL-852 580 chr3L 25842480 25842498 chr3L 25842565 25842584 4 86 1.5 1.0 1.2 1.8 104 chr3L 25842480 intron CG40178 - chr3L 25842532 intron CG40178 - chr3L 25842584 intron CG40178 - chr3L_4_25840001 chr3L_25840001 RAL-852 581 chr3L 26694928 26694956 chr3L 26695008 26695036 5 78 1.5 0.5 1.0 2.5 108 chr3L 26694928 intergenic not near genes chr3L 26694982 intergenic not near genes chr3L 26695036 intergenic not near genes chr3L_5_26690001 chr3L_26690001 RAL-852 582 chr3L 27368879 27368903 chr3L 27369423 27369448 4 545 2.0 1.0 1.5 1.6 569 chr3L 27368879 intron Dbp80 + chr3L 27369164 intron Dbp80 + chr3L 27369448 intron Dbp80 + chr3L_4_27365001 chr3L_27365001 RAL-852 583 chr3R 1443442 1443456 chr3R 1443518 1443530 4 75 0.0 0.0 0.0 4.0 88 chr3R 1443442 intron CG40155 + chr3R 1443486 intron CG40155 + chr3R 1443530 intron CG40155 + chr3R_4_1440001 chr3R_1440001 RAL-852 584 chr3R 2534155 2534162 chr3R 2541713 2541731 4 7566 6.0 12.0 9.0 0.4 7576 chr3R 2534155 intergenic not near genes chr3R 2537943 intergenic not near genes chr3R 2541731 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-852 585 chr3R 3877478 3877504 chr3R 3877618 3877645 6 140 1.5 1.5 1.5 2.4 167 chr3R 3877478 intergenic not near genes chr3R 3877562 intergenic not near genes chr3R 3877645 intergenic not near genes chr3R_6_3875001 chr3R_3875001 RAL-852 586 chr3R 4063812 4063828 chr3R 4069092 4069108 5 5280 1.0 5.0 3.0 1.2 5296 chr3R 4063812 intergenic not near genes chr3R 4066460 intergenic not near genes chr3R 4069108 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-852 587 chr3R 4609545 4609574 chr3R 4610709 4610738 1360 9 1164 1.5 1.0 1.2 4.1 1193 chr3R 4609545 intergenic not near genes chr3R 4610142 intergenic not near genes chr3R 4610738 intergenic not near genes chr3R_9_4610001 chr3R_4610001 RAL-852 588 chr3R 4753240 4753271 chr3R 4757543 4757574 F-element 8 4302 1.0 1.0 1.0 4.0 4334 chr3R 4753240 intron,intron atms +,CG44098 - chr3R 4755407 intron,intron atms +,CG44098 - chr3R 4757574 intron,exon atms +,CG44098 - chr3R_8_4755001 chr3R_4755001 RAL-852 589 chr3R 4759723 4759749 chr3R 4761219 4761246 hopper2 6 1496 1.0 5.0 3.0 1.5 1523 chr3R 4759723 intron,intron atms +,CG44098 - chr3R 4760484 intron,intron atms +,CG44098 - chr3R 4761246 intron,intron atms +,CG44098 - chr3R_6_4760001 chr3R_4760001 RAL-852 590 chr3R 4769165 4769187 chr3R 4769243 4769265 9 78 0.5 2.5 1.5 3.6 100 chr3R 4769165 intron,intron atms +,CG44098 - chr3R 4769215 intron,intron atms +,CG44098 - chr3R 4769265 intron,intron atms +,CG44098 - chr3R_9_4765001 chr3R_4765001 RAL-852 591 chr3R 4861566 4861596 chr3R 4861647 4861677 10 80 4.0 2.0 3.0 2.5 111 chr3R 4861566 intron opa + chr3R 4861622 intron opa + chr3R 4861677 intron opa + chr3R_10_4860001 chr3R_4860001 RAL-852 592 chr3R 4896293 4896322 chr3R 4896386 4896415 6 93 0.5 1.0 0.8 3.3 122 chr3R 4896293 intergenic CR45580 + chr3R 4896354 intergenic CR45580 + chr3R 4896415 intergenic CR45580 + chr3R_6_4895001 chr3R_4895001 RAL-852 593 chr3R 4942144 4942158 chr3R 4942240 4942254 4 96 0.0 2.5 1.2 1.8 110 chr3R 4942144 intron Cdep + chr3R 4942199 intron Cdep + chr3R 4942254 intron Cdep + chr3R_4_4940001 chr3R_4940001 RAL-852 594 chr3R 5045845 5045869 chr3R 5052947 5052971 HMS-Beagle 7 7102 2.5 2.0 2.2 2.2 7126 chr3R 5045845 intron CR43635 - chr3R 5049408 intergenic not near genes chr3R 5052971 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-852 595 chr3R 5105556 5105574 chr3R 5105639 5105657 4 82 0.5 1.0 0.8 2.2 101 chr3R 5105556 intergenic not near genes chr3R 5105606 intergenic not near genes chr3R 5105657 intergenic not near genes chr3R_4_5105001 chr3R_5105001 RAL-852 596 chr3R 5170271 5170298 chr3R 5170372 5170399 6 101 2.5 2.5 2.5 1.7 128 chr3R 5170271 intergenic dpr16 + chr3R 5170335 intergenic dpr16 + chr3R 5170399 intergenic dpr16 + chr3R_6_5170001 chr3R_5170001 RAL-852 597 chr3R 5198969 5198989 chr3R 5199165 5199185 5 196 3.0 0.5 1.8 1.8 216 chr3R 5198969 intron cno - chr3R 5199077 intron cno - chr3R 5199185 intron cno - chr3R_5_5195001 chr3R_5195001 RAL-852 598 chr3R 5318753 5318783 chr3R 5318829 5318861 10 78 1.0 2.5 1.8 3.6 108 chr3R 5318753 intron mtd - chr3R 5318807 intron mtd - chr3R 5318861 intron mtd - chr3R_10_5315001 chr3R_5315001 RAL-852 599 chr3R 5338402 5338419 chr3R 5343574 5343596 Rt1c 4 5176 3.5 3.0 3.2 1.0 5194 chr3R 5338402 intron mtd - chr3R 5340999 intron mtd - chr3R 5343596 intron mtd - chr3R_4_5340001 chr3R_5340001 RAL-852 600 chr3R 5453328 5453344 chr3R 5453441 5453455 4 112 2.0 2.0 2.0 1.3 127 chr3R 5453328 intron CG14669 + chr3R 5453392 intron CG14669 + chr3R 5453455 intron CG14669 + chr3R_4_5450001 chr3R_5450001 RAL-852 601 chr3R 5626458 5626495 chr3R 5626549 5626586 8 90 2.5 2.5 2.5 2.3 128 chr3R 5626458 intergenic not near genes chr3R 5626522 intergenic not near genes chr3R 5626586 intergenic not near genes chr3R_8_5625001 chr3R_5625001 RAL-852 602 chr3R 5822382 5822410 chr3R 5823549 5823577 1360 6 1167 1.5 3.0 2.2 1.9 1195 chr3R 5822382 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823577 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-852 603 chr3R 5927563 5927589 chr3R 5927801 5927829 pogo 8 239 1.5 1.5 1.5 3.2 266 chr3R 5927563 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927829 intron CG34113 - chr3R_8_5925001 chr3R_5925001 RAL-852 604 chr3R 5988951 5988980 chr3R 5989033 5989062 4 82 2.0 1.5 1.8 1.4 111 chr3R 5988951 intergenic CR44927 + chr3R 5989006 intergenic CR44927 + chr3R 5989062 intergenic CR44927 + chr3R_4_5985001 chr3R_5985001 RAL-852 605 chr3R 6035146 6035180 chr3R 6035225 6035257 7 79 0.5 2.0 1.2 3.2 111 chr3R 6035146 intergenic not near genes chr3R 6035202 intergenic not near genes chr3R 6035257 intergenic not near genes chr3R_7_6035001 chr3R_6035001 RAL-852 606 chr3R 6112024 6112056 chr3R 6112264 6112294 5 240 1.5 2.5 2.0 1.7 270 chr3R 6112024 exon Obp83g - chr3R 6112159 intron Obp83g - chr3R 6112294 5` UTR Obp83g - chr3R_5_6110001 chr3R_6110001 RAL-852 607 chr3R 6203967 6203988 chr3R 6204099 6204120 6 132 2.0 1.0 1.5 2.4 153 chr3R 6203967 intron Osi24 + chr3R 6204044 intron Osi24 + chr3R 6204120 intron Osi24 + chr3R_6_6200001 chr3R_6200001 RAL-852 608 chr3R 6206288 6206316 chr3R 6206505 6206533 BS 9 217 0.0 1.0 0.5 6.0 245 chr3R 6206288 exon Osi24 + chr3R 6206410 intron Osi24 + chr3R 6206533 intron Osi24 + chr3R_9_6205001 chr3R_6205001 RAL-852 609 chr3R 6571732 6571749 chr3R 6571818 6571833 4 85 1.0 3.0 2.0 1.3 101 chr3R 6571732 intron dpr11 - chr3R 6571782 intron dpr11 - chr3R 6571833 intron dpr11 - chr3R_4_6570001 chr3R_6570001 RAL-852 610 chr3R 6737501 6737532 chr3R 6739288 6739319 Doc 10 1786 1.5 1.5 1.5 4.0 1818 chr3R 6737501 intron pb - chr3R 6738410 intron pb - chr3R 6739319 intron pb - chr3R_10_6735001 chr3R_6735001 RAL-852 611 chr3R 6784146 6784175 chr3R 6784311 6784341 7 166 0.0 1.0 0.5 4.7 195 chr3R 6784146 intergenic not near genes chr3R 6784244 intergenic not near genes chr3R 6784341 intergenic not near genes chr3R_7_6780001 chr3R_6780001 RAL-852 612 chr3R 6961181 6961204 chr3R 6961260 6961283 6 79 0.5 1.5 1.0 3.0 102 chr3R 6961181 intron Antp - chr3R 6961232 intron Antp - chr3R 6961283 intron Antp - chr3R_6_6960001 chr3R_6960001 RAL-852 613 chr3R 7092796 7092815 chr3R 7093359 7093379 6 564 2.0 1.5 1.8 2.1 583 chr3R 7092796 3` UTR CR43685 - chr3R 7093088 intron CR43685 - chr3R 7093379 3` UTR CR43685 - chr3R_6_7090001 chr3R_7090001 RAL-852 614 chr3R 7103295 7103309 chr3R 7103371 7103384 4 76 0.5 1.5 1.0 2.0 89 chr3R 7103295 intron Alh - chr3R 7103340 intron Alh - chr3R 7103384 intron Alh - chr3R_4_7100001 chr3R_7100001 RAL-852 615 chr3R 7366215 7366226 chr3R 7366822 7366832 6 607 0.0 3.5 1.8 2.1 617 chr3R 7366215 3` UTR,3` UTR Mst84Da +,MstProx - chr3R 7366524 exon MstProx - chr3R 7366832 exon MstProx - chr3R_6_7365001 chr3R_7365001 RAL-852 616 chr3R 7415975 7416013 chr3R 7416121 7416159 5 146 1.0 1.5 1.2 2.3 184 chr3R 7415975 intergenic not near genes chr3R 7416067 intergenic not near genes chr3R 7416159 intergenic not near genes chr3R_5_7415001 chr3R_7415001 RAL-852 617 chr3R 7447384 7447402 chr3R 7447707 7447725 4 322 2.5 1.0 1.8 1.4 341 chr3R 7447384 intergenic not near genes chr3R 7447554 intergenic not near genes chr3R 7447725 intergenic not near genes chr3R_4_7445001 chr3R_7445001 RAL-852 618 chr3R 7613274 7613299 chr3R 7614494 7614521 4 1222 9.0 6.0 7.5 0.5 1247 chr3R 7613274 intron CG34127 - chr3R 7613898 intron CG34127 - chr3R 7614521 intron CG34127 - chr3R_4_7610001 chr3R_7610001 RAL-852 619 chr3R 7729467 7729494 chr3R 7737404 7737432 Stalker2 4 7938 0.5 0.5 0.5 2.7 7965 chr3R 7729467 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737432 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-852 620 chr3R 7857640 7857673 chr3R 7857723 7857756 8 83 1.5 0.5 1.0 4.0 116 chr3R 7857640 3` UTR CG17816 - chr3R 7857698 3` UTR CG17816 - chr3R 7857756 3` UTR CG17816 - chr3R_8_7855001 chr3R_7855001 RAL-852 621 chr3R 8040650 8040674 chr3R 8040734 8040758 6 84 1.0 0.0 0.5 4.0 108 chr3R 8040650 intergenic not near genes chr3R 8040704 intergenic not near genes chr3R 8040758 intergenic CG43060 + chr3R_6_8040001 chr3R_8040001 RAL-852 622 chr3R 8310050 8310085 chr3R 8310169 8310201 7 118 3.0 1.0 2.0 2.3 151 chr3R 8310050 5` UTR CG11693 - chr3R 8310126 intron CG11693 - chr3R 8310201 intron CG11693 - chr3R_7_8310001 chr3R_8310001 RAL-852 623 chr3R 8339246 8339247 chr3R 21907534 21907536 11 13568288 11.0 12.0 11.5 0.9 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-852 624 chr3R 8403007 8403036 chr3R 8412171 8412201 roo 8 9166 2.0 1.0 1.5 3.2 9194 chr3R 8403007 intron CG45263 - chr3R 8407604 intron CG45263 - chr3R 8412201 intron CG45263 - chr3R_8_8405001 chr3R_8405001 RAL-852 625 chr3R 8541339 8541369 chr3R 8541420 8541450 14 80 2.0 3.0 2.5 4.0 111 chr3R 8541339 intergenic not near genes chr3R 8541394 intergenic not near genes chr3R 8541450 intergenic not near genes chr3R_14_8540001 chr3R_8540001 RAL-852 626 chr3R 8570477 8570510 chr3R 8575112 8575146 HMS-Beagle 4 4636 2.0 0.5 1.2 1.8 4669 chr3R 8570477 intergenic not near genes chr3R 8572812 intergenic not near genes chr3R 8575146 intergenic not near genes chr3R_4_8570001 chr3R_8570001 RAL-852 627 chr3R 8638063 8638082 chr3R 8638174 8638193 6 111 1.0 0.0 0.5 4.0 130 chr3R 8638063 intergenic not near genes chr3R 8638128 intergenic not near genes chr3R 8638193 intergenic not near genes chr3R_6_8635001 chr3R_8635001 RAL-852 628 chr3R 8740246 8740275 chr3R 8740335 8740364 8 89 1.0 1.5 1.2 3.6 118 chr3R 8740246 intron CG9801 - chr3R 8740305 intron CG9801 - chr3R 8740364 intron CG9801 - chr3R_8_8740001 chr3R_8740001 RAL-852 629 chr3R 8756289 8756316 chr3R 8756365 8756392 5 76 0.5 1.0 0.8 2.8 103 chr3R 8756289 intron,intron CG11768 -,CG34135 - chr3R 8756340 intron,intron CG11768 -,CG34135 - chr3R 8756392 intron,intron CG11768 -,CG34135 - chr3R_5_8755001 chr3R_8755001 RAL-852 630 chr3R 8880616 8880646 chr3R 8880947 8880977 6 331 0.0 0.5 0.2 5.0 361 chr3R 8880616 intron pyd - chr3R 8880796 intron pyd - chr3R 8880977 intron pyd - chr3R_6_8880001 chr3R_8880001 RAL-852 631 chr3R 8960578 8960601 chr3R 8960655 8960678 4 77 0.5 2.0 1.2 1.8 100 chr3R 8960578 intron CG11966 - chr3R 8960628 intron CG11966 - chr3R 8960678 intron CG11966 - chr3R_4_8960001 chr3R_8960001 RAL-852 632 chr3R 9101838 9101870 chr3R 9101935 9101968 9 98 2.0 0.5 1.2 4.1 130 chr3R 9101838 intron pum - chr3R 9101903 intron pum - chr3R 9101968 intron pum - chr3R_9_9100001 chr3R_9100001 RAL-852 633 chr3R 9149682 9149706 chr3R 9149761 9149786 4 80 1.0 2.0 1.5 1.6 104 chr3R 9149682 intron pum - chr3R 9149734 intron pum - chr3R 9149786 intron pum - chr3R_4_9145001 chr3R_9145001 RAL-852 634 chr3R 9166475 9166487 chr3R 9166895 9166907 5 420 1.0 3.0 2.0 1.7 432 chr3R 9166475 intron pum - chr3R 9166691 intron pum - chr3R 9166907 intron pum - chr3R_5_9165001 chr3R_9165001 RAL-852 635 chr3R 9319572 9319606 chr3R 9320007 9320041 jockey 7 434 1.0 4.0 2.5 2.0 469 chr3R 9319572 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320041 intron CG8861 - chr3R_7_9315001 chr3R_9315001 RAL-852 636 chr3R 9601469 9601483 chr3R 9601587 9601601 4 118 4.0 1.0 2.5 1.1 132 chr3R 9601469 intron CG8312 + chr3R 9601535 intron CG8312 + chr3R 9601601 intron CG8312 + chr3R_4_9600001 chr3R_9600001 RAL-852 637 chr3R 9881813 9881824 chr3R 9882031 9882044 4 220 0.5 2.5 1.5 1.6 231 chr3R 9881813 intron Glut4EF + chr3R 9881928 intron Glut4EF + chr3R 9882044 intron Glut4EF + chr3R_4_9880001 chr3R_9880001 RAL-852 638 chr3R 10042666 10042699 chr3R 10042744 10042779 5 79 1.5 0.5 1.0 2.5 113 chr3R 10042666 intron Mical - chr3R 10042722 intron Mical - chr3R 10042779 intron Mical - chr3R_5_10040001 chr3R_10040001 RAL-852 639 chr3R 10395657 10395685 chr3R 10395738 10395766 6 80 0.5 1.0 0.8 3.3 109 chr3R 10395657 intron cwo + chr3R 10395712 intron cwo + chr3R 10395766 intron cwo + chr3R_6_10395001 chr3R_10395001 RAL-852 640 chr3R 10417477 10417495 chr3R 10417812 10417830 4 334 4.0 0.0 2.0 1.3 353 chr3R 10417477 intergenic not near genes chr3R 10417654 intergenic not near genes chr3R 10417830 intergenic not near genes chr3R_4_10415001 chr3R_10415001 RAL-852 641 chr3R 10904911 10904936 chr3R 10905114 10905139 4 203 0.5 1.5 1.0 2.0 228 chr3R 10904911 intergenic not near genes chr3R 10905025 intergenic not near genes chr3R 10905139 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-852 642 chr3R 10919685 10919713 chr3R 10919763 10919791 4 78 3.0 1.0 2.0 1.3 106 chr3R 10919685 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919791 intergenic not near genes chr3R_4_10915001 chr3R_10915001 RAL-852 643 chr3R 10920043 10920074 chr3R 10920121 10920152 4 78 1.0 1.5 1.2 1.8 109 chr3R 10920043 intergenic not near genes chr3R 10920098 intergenic not near genes chr3R 10920152 intergenic not near genes chr3R_4_10920001 chr3R_10920001 RAL-852 644 chr3R 10963567 10963587 chr3R 10963661 10963681 7 94 2.0 1.5 1.8 2.5 114 chr3R 10963567 intergenic not near genes chr3R 10963624 intergenic not near genes chr3R 10963681 intergenic not near genes chr3R_7_10960001 chr3R_10960001 RAL-852 645 chr3R 10977707 10977732 chr3R 10977784 10977809 6 77 3.0 0.5 1.8 2.1 102 chr3R 10977707 intron CG34114 + chr3R 10977758 intron CG34114 + chr3R 10977809 intron CG34114 + chr3R_6_10975001 chr3R_10975001 RAL-852 646 chr3R 11085468 11085491 chr3R 11085545 11085564 4 76 0.0 0.0 0.0 4.0 96 chr3R 11085468 3` UTR CR44940 - chr3R 11085516 intergenic CR44940 - chr3R 11085564 intergenic CR44940 - chr3R_4_11085001 chr3R_11085001 RAL-852 647 chr3R 11102327 11102344 chr3R 11102408 11102420 4 79 2.0 2.0 2.0 1.3 93 chr3R 11102327 intergenic not near genes chr3R 11102374 intergenic not near genes chr3R 11102420 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-852 648 chr3R 11197991 11198015 chr3R 11198090 11198114 5 99 1.5 0.0 0.8 2.8 123 chr3R 11197991 intron cu + chr3R 11198052 intron cu + chr3R 11198114 intron cu + chr3R_5_11195001 chr3R_11195001 RAL-852 649 chr3R 11242261 11242283 chr3R 11242348 11242372 5 88 2.0 2.5 2.2 1.6 111 chr3R 11242261 3` UTR CG17734 - chr3R 11242316 3` UTR CG17734 - chr3R 11242372 3` UTR CG17734 - chr3R_5_11240001 chr3R_11240001 RAL-852 650 chr3R 11271417 11271444 chr3R 11271495 11271521 10 78 0.5 2.0 1.2 4.5 104 chr3R 11271417 3` UTR CR31386 - chr3R 11271469 3` UTR CR31386 - chr3R 11271521 3` UTR CR31386 - chr3R_10_11270001 chr3R_11270001 RAL-852 651 chr3R 11379236 11379267 chr3R 11388391 11388422 roo 4 9154 2.0 0.5 1.2 1.8 9186 chr3R 11379236 intron pros + chr3R 11383829 intron pros + chr3R 11388422 intron pros + chr3R_4_11380001 chr3R_11380001 RAL-852 652 chr3R 11570388 11570407 chr3R 11570470 11570489 6 82 1.5 0.0 0.8 3.3 101 chr3R 11570388 intron Mrp4 + chr3R 11570438 intron Mrp4 + chr3R 11570489 intron Mrp4 + chr3R_6_11570001 chr3R_11570001 RAL-852 653 chr3R 12022890 12022912 chr3R 12025067 12025089 pogo 6 2177 1.5 3.0 2.2 1.9 2199 chr3R 12022890 intergenic not near genes chr3R 12023990 intergenic not near genes chr3R 12025089 intergenic not near genes chr3R_6_12020001 chr3R_12020001 RAL-852 654 chr3R 12039140 12039163 chr3R 12039349 12039372 6 209 2.0 1.5 1.8 2.1 232 chr3R 12039140 intergenic not near genes chr3R 12039256 intergenic not near genes chr3R 12039372 intergenic not near genes chr3R_6_12035001 chr3R_12035001 RAL-852 655 chr3R 12111891 12111924 chr3R 12111967 12112000 5 76 1.5 1.5 1.5 2.0 109 chr3R 12111891 intergenic dpr17 + chr3R 12111946 intergenic not near genes chr3R 12112000 intergenic not near genes chr3R_5_12110001 chr3R_12110001 RAL-852 656 chr3R 12257440 12257460 chr3R 12257515 12257536 4 76 2.0 0.0 1.0 2.0 96 chr3R 12257440 intergenic not near genes chr3R 12257488 intergenic not near genes chr3R 12257536 intergenic not near genes chr3R_4_12255001 chr3R_12255001 RAL-852 657 chr3R 12267859 12267888 chr3R 12267937 12267968 4 79 0.5 0.0 0.2 3.3 109 chr3R 12267859 intron svp + chr3R 12267914 intron svp + chr3R 12267968 intron svp + chr3R_4_12265001 chr3R_12265001 RAL-852 658 chr3R 12406497 12406519 chr3R 12406581 12406603 6 83 0.5 2.0 1.2 2.7 106 chr3R 12406497 intergenic CG5167 +,Cyp9f2 - chr3R 12406550 5` UTR CG5167 + chr3R 12406603 5` UTR CG5167 + chr3R_6_12405001 chr3R_12405001 RAL-852 659 chr3R 12546460 12546487 chr3R 12546543 12546570 6 83 2.0 1.5 1.8 2.1 110 chr3R 12546460 intron Octbeta3R - chr3R 12546515 intron Octbeta3R - chr3R 12546570 intron Octbeta3R - chr3R_6_12545001 chr3R_12545001 RAL-852 660 chr3R 12706468 12706498 chr3R 12715780 12715810 7 9312 20.5 14.5 17.5 0.4 9342 chr3R 12706468 exon mus308 - chr3R 12711139 exon mus308 - chr3R 12715810 intron Men - chr3R_7_12710001 chr3R_12710001 RAL-852 661 chr3R 12748971 12748983 chr3R 12749064 12749076 4 93 1.5 2.0 1.8 1.4 105 chr3R 12748971 intron beat-Vc - chr3R 12749024 intron beat-Vc - chr3R 12749076 intron beat-Vc - chr3R_4_12745001 chr3R_12745001 RAL-852 662 chr3R 12827577 12827607 chr3R 12827673 12827702 6 96 1.5 2.0 1.8 2.1 125 chr3R 12827577 intergenic not near genes chr3R 12827640 intergenic not near genes chr3R 12827702 intergenic not near genes chr3R_6_12825001 chr3R_12825001 RAL-852 663 chr3R 13067835 13067871 chr3R 13067915 13067951 4 80 1.0 0.5 0.8 2.2 116 chr3R 13067835 intron sim + chr3R 13067893 intron sim + chr3R 13067951 intron sim + chr3R_4_13065001 chr3R_13065001 RAL-852 664 chr3R 13104419 13104420 chr3R 21907534 21907534 14 8803115 6.5 12.0 9.2 1.4 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_14_17505001 chr3R_17505001 RAL-852 665 chr3R 13555688 13555705 chr3R 13555766 13555783 7 77 0.5 0.0 0.2 5.8 95 chr3R 13555688 intergenic not near genes chr3R 13555736 intergenic not near genes chr3R 13555783 intergenic not near genes chr3R_7_13555001 chr3R_13555001 RAL-852 666 chr3R 13577509 13577542 chr3R 13577619 13577652 4 110 1.0 0.5 0.8 2.2 143 chr3R 13577509 intergenic not near genes chr3R 13577580 intergenic not near genes chr3R 13577652 intergenic not near genes chr3R_4_13575001 chr3R_13575001 RAL-852 667 chr3R 13672950 13672972 chr3R 13673028 13673049 6 78 0.5 4.0 2.2 1.9 99 chr3R 13672950 intron Task6 - chr3R 13673000 intron Task6 - chr3R 13673049 intron Task6 - chr3R_6_13670001 chr3R_13670001 RAL-852 668 chr3R 13693028 13693028 chr3R 21907534 21907536 17 8214507 5.0 12.0 8.5 1.8 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_17_17800001 chr3R_17800001 RAL-852 669 chr3R 13863704 13863716 chr3R 13863792 13863804 4 88 1.5 1.5 1.5 1.6 100 chr3R 13863704 intergenic not near genes chr3R 13863754 intergenic not near genes chr3R 13863804 intergenic not near genes chr3R_4_13860001 chr3R_13860001 RAL-852 670 chr3R 13921059 13921085 chr3R 13921136 13921162 6 77 1.5 1.0 1.2 2.7 103 chr3R 13921059 intergenic not near genes chr3R 13921110 intergenic not near genes chr3R 13921162 intergenic not near genes chr3R_6_13920001 chr3R_13920001 RAL-852 671 chr3R 14166683 14166701 chr3R 14167328 14167346 5 645 1.5 2.5 2.0 1.7 663 chr3R 14166683 3` UTR Dop1R1 - chr3R 14167014 3` UTR Dop1R1 - chr3R 14167346 3` UTR Dop1R1 - chr3R_5_14165001 chr3R_14165001 RAL-852 672 chr3R 14174963 14174981 chr3R 14175049 14175068 4 86 1.0 3.0 2.0 1.3 105 chr3R 14174963 3` UTR Dop1R1 - chr3R 14175016 3` UTR Dop1R1 - chr3R 14175068 3` UTR Dop1R1 - chr3R_4_14175001 chr3R_14175001 RAL-852 673 chr3R 14180818 14180837 chr3R 14185583 14185601 F-element 4 4765 3.0 1.0 2.0 1.3 4783 chr3R 14180818 intron Dop1R1 - chr3R 14183210 intron Dop1R1 - chr3R 14185601 intron Dop1R1 - chr3R_4_14180001 chr3R_14180001 RAL-852 674 chr3R 14236564 14236585 chr3R 14236683 14236703 5 118 1.0 0.5 0.8 2.8 139 chr3R 14236564 3` UTR CG43291 - chr3R 14236634 3` UTR CG43291 - chr3R 14236703 exon CG43291 - chr3R_5_14235001 chr3R_14235001 RAL-852 675 chr3R 14246391 14246416 chr3R 14247887 14247912 jockey 5 1496 3.0 1.0 2.0 1.7 1521 chr3R 14246391 intergenic not near genes chr3R 14247152 intergenic not near genes chr3R 14247912 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-852 676 chr3R 14364066 14364091 chr3R 14364140 14364165 6 75 1.0 0.5 0.8 3.3 99 chr3R 14364066 intron NK7.1 - chr3R 14364116 intron NK7.1 - chr3R 14364165 intron NK7.1 - chr3R_6_14360001 chr3R_14360001 RAL-852 677 chr3R 14440725 14440738 chr3R 14440801 14440814 5 76 0.5 0.0 0.2 4.2 89 chr3R 14440725 intron cv-c - chr3R 14440770 intron cv-c - chr3R 14440814 intron cv-c - chr3R_5_14440001 chr3R_14440001 RAL-852 678 chr3R 14507501 14507527 chr3R 14507584 14507610 5 83 2.5 2.5 2.5 1.4 109 chr3R 14507501 intron CR44177 + chr3R 14507556 intron CR44177 + chr3R 14507610 intron CR44177 + chr3R_5_14505001 chr3R_14505001 RAL-852 679 chr3R 14686230 14686252 chr3R 14686610 14686625 5 379 2.5 2.5 2.5 1.4 395 chr3R 14686230 intron Meltrin - chr3R 14686428 intron Meltrin - chr3R 14686625 intron Meltrin - chr3R_5_14685001 chr3R_14685001 RAL-852 680 chr3R 14704382 14704418 chr3R 14704459 14704495 4 77 0.5 0.5 0.5 2.7 113 chr3R 14704382 intron kibra - chr3R 14704438 intron kibra - chr3R 14704495 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-852 681 chr3R 14840949 14840971 chr3R 14841035 14841056 8 86 0.5 2.0 1.2 3.6 107 chr3R 14840949 intron btsz - chr3R 14841002 intron btsz - chr3R 14841056 intron btsz - chr3R_8_14840001 chr3R_14840001 RAL-852 682 chr3R 14911568 14911596 chr3R 14911673 14911702 6 106 0.5 0.5 0.5 4.0 134 chr3R 14911568 intergenic not near genes chr3R 14911635 intergenic not near genes chr3R 14911702 intergenic not near genes chr3R_6_14910001 chr3R_14910001 RAL-852 683 chr3R 14973592 14973617 chr3R 14974081 14974106 4 488 0.5 1.5 1.0 2.0 514 chr3R 14973592 intergenic not near genes chr3R 14973849 intergenic not near genes chr3R 14974106 intergenic not near genes chr3R_4_14970001 chr3R_14970001 RAL-852 684 chr3R 15006861 15006882 chr3R 15007240 15007261 5 379 2.5 2.0 2.2 1.6 400 chr3R 15006861 intergenic not near genes chr3R 15007061 intergenic not near genes chr3R 15007261 intergenic not near genes chr3R_5_15005001 chr3R_15005001 RAL-852 685 chr3R 15132064 15132087 chr3R 15135123 15135147 Juan 6 3060 2.0 3.0 2.5 1.7 3083 chr3R 15132064 intergenic CG42788 - chr3R 15133606 intergenic not near genes chr3R 15135147 3` UTR CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-852 686 chr3R 15320400 15320421 chr3R 15320642 15320664 5 243 1.0 1.0 1.0 2.5 264 chr3R 15320400 5` UTR CG44040 + chr3R 15320532 exon CG44040 + chr3R 15320664 3` UTR CG44040 + chr3R_5_15320001 chr3R_15320001 RAL-852 687 chr3R 15406153 15406170 chr3R 15406232 15406251 5 80 1.5 1.0 1.2 2.3 98 chr3R 15406153 intron CG6125 - chr3R 15406202 intron CG6125 - chr3R 15406251 intron CG6125 - chr3R_5_15405001 chr3R_15405001 RAL-852 688 chr3R 15407877 15407897 chr3R 15408093 15408113 5 216 0.5 0.0 0.2 4.2 236 chr3R 15407877 intergenic not near genes chr3R 15407995 intergenic not near genes chr3R 15408113 intergenic not near genes chr3R_5_15405001 chr3R_15405001 RAL-852 689 chr3R 15416265 15416277 chr3R 15416345 15416357 4 80 0.0 2.0 1.0 2.0 92 chr3R 15416265 3` UTR Atx2 + chr3R 15416311 3` UTR Atx2 + chr3R 15416357 3` UTR Atx2 + chr3R_4_15415001 chr3R_15415001 RAL-852 690 chr3R 15601163 15601194 chr3R 15608685 15608716 412 10 7522 1.5 1.5 1.5 4.0 7553 chr3R 15601163 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_10_15600001 chr3R_15600001 RAL-852 691 chr3R 15618752 15618757 chr3R 15626226 15626231 blood 4 7474 0.5 2.0 1.2 1.8 7479 chr3R 15618752 intergenic not near genes chr3R 15622492 intergenic not near genes chr3R 15626231 intergenic not near genes chr3R_4_15620001 chr3R_15620001 RAL-852 692 chr3R 15921929 15921949 chr3R 15922180 15922200 4 252 10.0 10.5 10.2 0.4 271 chr3R 15921929 intron CG4221 + chr3R 15922064 intron CG4221 + chr3R 15922200 intron CG4221 + chr3R_4_15920001 chr3R_15920001 RAL-852 693 chr3R 16225090 16225114 chr3R 16225175 16225199 4 85 0.5 1.0 0.8 2.2 109 chr3R 16225090 intergenic not near genes chr3R 16225144 intergenic not near genes chr3R 16225199 intergenic tara + chr3R_4_16225001 chr3R_16225001 RAL-852 694 chr3R 16246523 16246554 chr3R 16246599 16246629 5 75 0.0 0.0 0.0 5.0 106 chr3R 16246523 intron tara + chr3R 16246576 intron tara + chr3R 16246629 intron tara + chr3R_5_16245001 chr3R_16245001 RAL-852 695 chr3R 16499556 16499571 chr3R 16499640 16499656 5 85 0.0 2.0 1.0 2.5 100 chr3R 16499556 intron decay - chr3R 16499606 intron decay - chr3R 16499656 intron decay - chr3R_5_16495001 chr3R_16495001 RAL-852 696 chr3R 16538243 16538277 chr3R 16538791 16538825 6 548 0.5 1.5 1.0 3.0 582 chr3R 16538243 intron CG42342 + chr3R 16538534 intron CG42342 + chr3R 16538825 intron CG42342 + chr3R_6_16535001 chr3R_16535001 RAL-852 697 chr3R 16555338 16555363 chr3R 16555431 16555455 4 92 1.5 1.0 1.2 1.8 117 chr3R 16555338 intron CG42342 + chr3R 16555396 intron CG42342 + chr3R 16555455 intron CG42342 + chr3R_4_16555001 chr3R_16555001 RAL-852 698 chr3R 16782015 16782044 chr3R 16782096 16782125 4 81 0.5 0.5 0.5 2.7 110 chr3R 16782015 intergenic not near genes chr3R 16782070 intergenic not near genes chr3R 16782125 intergenic not near genes chr3R_4_16780001 chr3R_16780001 RAL-852 699 chr3R 17120508 17120532 chr3R 17120733 17120757 5 225 2.0 2.5 2.2 1.6 249 chr3R 17120508 intron,exon cher -,CG34278 + chr3R 17120632 intron,exon cher -,CG34278 + chr3R 17120757 intron,3` UTR cher -,CG34278 + chr3R_5_17120001 chr3R_17120001 RAL-852 700 chr3R 17348726 17348749 chr3R 17348815 17348838 6 89 1.5 1.5 1.5 2.4 112 chr3R 17348726 intron beat-IIa - chr3R 17348782 intron beat-IIa - chr3R 17348838 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-852 701 chr3R 17394440 17394463 chr3R 17394604 17394627 5 164 4.5 1.5 3.0 1.2 187 chr3R 17394440 intron CREG - chr3R 17394534 intron CREG - chr3R 17394627 5` UTR CREG - chr3R_5_17390001 chr3R_17390001 RAL-852 702 chr3R 17432820 17432854 chr3R 17433000 17433034 7 180 0.0 2.0 1.0 3.5 214 chr3R 17432820 intron CG5873 + chr3R 17432927 intron CG5873 + chr3R 17433034 intron CG5873 + chr3R_7_17430001 chr3R_17430001 RAL-852 703 chr3R 17507449 17507473 chr3R 17507527 17507551 4 78 2.0 0.5 1.2 1.8 102 chr3R 17507449 intergenic not near genes chr3R 17507500 intergenic not near genes chr3R 17507551 intergenic not near genes chr3R_4_17505001 chr3R_17505001 RAL-852 704 chr3R 17658458 17658493 chr3R 17658644 17658677 10 186 0.5 0.5 0.5 6.7 219 chr3R 17658458 intron CG14322 + chr3R 17658568 intron CG14322 + chr3R 17658677 intron CG14322 + chr3R_10_17655001 chr3R_17655001 RAL-852 705 chr3R 17739181 17739209 chr3R 17739263 17739291 6 81 2.0 0.5 1.2 2.7 110 chr3R 17739181 intron TyrRII + chr3R 17739236 intron TyrRII + chr3R 17739291 intron TyrRII + chr3R_6_17735001 chr3R_17735001 RAL-852 706 chr3R 17871537 17871547 chr3R 17878696 17878706 5 7159 15.5 14.0 14.8 0.3 7169 chr3R 17871537 3` UTR tinc + chr3R 17875122 3` UTR Rim - chr3R 17878706 intron Rim - chr3R_5_17875001 chr3R_17875001 RAL-852 707 chr3R 17953264 17953289 chr3R 17953393 17953418 6 129 2.5 0.5 1.5 2.4 154 chr3R 17953264 intron cpo + chr3R 17953341 intron cpo + chr3R 17953418 intron cpo + chr3R_6_17950001 chr3R_17950001 RAL-852 708 chr3R 18085526 18085543 chr3R 18085884 18085902 4 358 0.5 1.5 1.0 2.0 376 chr3R 18085526 intergenic not near genes chr3R 18085714 intergenic not near genes chr3R 18085902 intergenic not near genes chr3R_4_18085001 chr3R_18085001 RAL-852 709 chr3R 18143445 18143582 chr3R 18143520 18143671 4 79 0.5 1.0 0.8 2.2 226 chr3R 18143445 intergenic not near genes chr3R 18143558 intergenic not near genes chr3R 18143671 intergenic not near genes chr3R_4_18140001 chr3R_18140001 RAL-852 710 chr3R 18235408 18235437 chr3R 18235490 18235518 5 82 0.5 2.5 1.5 2.0 110 chr3R 18235408 intergenic not near genes chr3R 18235463 intergenic not near genes chr3R 18235518 intergenic not near genes chr3R_5_18235001 chr3R_18235001 RAL-852 711 chr3R 18331781 18331790 chr3R 18333275 18333283 hopper2 4 1494 1.5 0.5 1.0 2.0 1502 chr3R 18331781 3` UTR CG15803 - chr3R 18332532 intron CG15803 - chr3R 18333283 3` UTR CG15803 - chr3R_4_18330001 chr3R_18330001 RAL-852 712 chr3R 18379626 18379658 chr3R 18379932 18379964 5 306 2.0 1.0 1.5 2.0 338 chr3R 18379626 intron CG7675 - chr3R 18379795 intron CG7675 - chr3R 18379964 intron CG7675 - chr3R_5_18375001 chr3R_18375001 RAL-852 713 chr3R 18438410 18438431 chr3R 18438489 18438509 7 79 0.5 1.0 0.8 3.9 99 chr3R 18438410 intron fru - chr3R 18438460 intron fru - chr3R 18438509 intron fru - chr3R_7_18435001 chr3R_18435001 RAL-852 714 chr3R 18606502 18606524 chr3R 18610734 18610756 F-element 4 4232 2.0 0.5 1.2 1.8 4254 chr3R 18606502 intron,intron qin +,CG14304 - chr3R 18608629 intron,intron qin +,CG14304 - chr3R 18610756 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-852 715 chr3R 18703043 18703063 chr3R 18703120 18703140 6 77 1.0 2.0 1.5 2.4 97 chr3R 18703043 intergenic not near genes chr3R 18703092 intergenic not near genes chr3R 18703140 intergenic not near genes chr3R_6_18700001 chr3R_18700001 RAL-852 716 chr3R 18720322 18720342 chr3R 18720418 18720438 6 96 0.0 3.0 1.5 2.4 116 chr3R 18720322 intron Cha + chr3R 18720380 intron Cha + chr3R 18720438 intron Cha + chr3R_6_18720001 chr3R_18720001 RAL-852 717 chr3R 18766776 18766802 chr3R 18766854 18766880 7 77 0.5 2.0 1.2 3.2 104 chr3R 18766776 intron CG7720 - chr3R 18766828 intron CG7720 - chr3R 18766880 intron CG7720 - chr3R_7_18765001 chr3R_18765001 RAL-852 718 chr3R 18781699 18781724 chr3R 18781775 18781791 4 74 1.0 0.5 0.8 2.2 92 chr3R 18781699 intron CG7720 - chr3R 18781745 intron CG7720 - chr3R 18781791 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-852 719 chr3R 18812088 18812108 chr3R 18812166 18812185 7 77 1.0 2.5 1.8 2.5 97 chr3R 18812088 intron CG18208 - chr3R 18812136 intron CG18208 - chr3R 18812185 intron CG18208 - chr3R_7_18810001 chr3R_18810001 RAL-852 720 chr3R 18825409 18825433 chr3R 18825572 18825596 6 163 0.0 1.5 0.8 3.3 187 chr3R 18825409 intron CG18208 - chr3R 18825502 intron CG18208 - chr3R 18825596 intron CG18208 - chr3R_6_18825001 chr3R_18825001 RAL-852 721 chr3R 19140271 19140294 chr3R 19140717 19140742 4 446 1.0 2.5 1.8 1.4 471 chr3R 19140271 3` UTR Ppcs - chr3R 19140506 3` UTR Ppcs - chr3R 19140742 3` UTR Ppcs - chr3R_4_19140001 chr3R_19140001 RAL-852 722 chr3R 19191268 19191301 chr3R 19191390 19191423 8 122 1.0 0.5 0.8 4.4 155 chr3R 19191268 intron CG31475 + chr3R 19191346 intron CG31475 + chr3R 19191423 intron CG31475 + chr3R_8_19190001 chr3R_19190001 RAL-852 723 chr3R 19474894 19474900 chr3R 19475134 19475140 4 240 0.0 0.0 0.0 4.0 246 chr3R 19474894 intron Dys + chr3R 19475017 intron Dys + chr3R 19475140 intron Dys + chr3R_4_19475001 chr3R_19475001 RAL-852 724 chr3R 19490438 19490469 chr3R 19490527 19490558 6 89 1.0 2.5 1.8 2.1 120 chr3R 19490438 intron,exon Dys +,CG15025 - chr3R 19490498 intron,intron Dys +,CG15025 - chr3R 19490558 intron,intron Dys +,CG15025 - chr3R_6_19490001 chr3R_19490001 RAL-852 725 chr3R 19505932 19505965 chr3R 19506031 19506064 7 99 0.5 0.0 0.2 5.8 132 chr3R 19505932 exon Dys + chr3R 19505998 intron Dys + chr3R 19506064 intron Dys + chr3R_7_19505001 chr3R_19505001 RAL-852 726 chr3R 19570308 19570336 chr3R 19570384 19570411 5 75 2.5 0.5 1.5 2.0 103 chr3R 19570308 intron Dys + chr3R 19570360 intron Dys + chr3R 19570411 intron Dys + chr3R_5_19570001 chr3R_19570001 RAL-852 727 chr3R 19604686 19604710 chr3R 19604818 19604843 6 133 1.5 2.0 1.8 2.1 157 chr3R 19604686 exon CG7342 + chr3R 19604764 intron CG7342 + chr3R 19604843 intron CG7342 + chr3R_6_19600001 chr3R_19600001 RAL-852 728 chr3R 19965021 19965044 chr3R 19965110 19965133 4 87 1.5 0.5 1.0 2.0 112 chr3R 19965021 intron Hs6st - chr3R 19965077 intron Hs6st - chr3R 19965133 intron Hs6st - chr3R_4_19965001 chr3R_19965001 RAL-852 729 chr3R 20201353 20201380 chr3R 20201439 20201466 4 86 0.5 1.0 0.8 2.2 113 chr3R 20201353 intergenic not near genes chr3R 20201410 intergenic not near genes chr3R 20201466 intergenic not near genes chr3R_4_20200001 chr3R_20200001 RAL-852 730 chr3R 20266516 20266531 chr3R 20272987 20273002 Burdock 5 6471 1.0 0.5 0.8 2.8 6486 chr3R 20266516 intron cic + chr3R 20269759 intron cic + chr3R 20273002 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-852 731 chr3R 20282280 20282310 chr3R 20282356 20282386 4 76 0.0 2.0 1.0 2.0 106 chr3R 20282280 intron cic + chr3R 20282333 intron cic + chr3R 20282386 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-852 732 chr3R 20406485 20406517 chr3R 20406583 20406614 5 98 0.0 0.0 0.0 5.0 129 chr3R 20406485 intron Gfrl - chr3R 20406550 intron Gfrl - chr3R 20406614 intron,3` UTR Gfrl -,CG4335 - chr3R_5_20405001 chr3R_20405001 RAL-852 733 chr3R 20467080 20467114 chr3R 20467156 20467188 5 75 2.0 1.0 1.5 2.0 108 chr3R 20467080 intron Gfrl - chr3R 20467134 intron Gfrl - chr3R 20467188 intron Gfrl - chr3R_5_20465001 chr3R_20465001 RAL-852 734 chr3R 21141680 21141704 chr3R 21150161 21150185 Tirant 6 8480 0.5 2.0 1.2 2.7 8505 chr3R 21141680 intron SNF4Agamma + chr3R 21145932 intron SNF4Agamma + chr3R 21150185 intron SNF4Agamma + chr3R_6_21145001 chr3R_21145001 RAL-852 735 chr3R 21151805 21151818 chr3R 21152196 21152209 5 391 1.5 2.5 2.0 1.7 404 chr3R 21151805 intron SNF4Agamma + chr3R 21152007 intron SNF4Agamma + chr3R 21152209 intron SNF4Agamma + chr3R_5_21150001 chr3R_21150001 RAL-852 736 chr3R 21761126 21761154 chr3R 21768518 21768546 mdg1 5 7392 3.0 2.5 2.8 1.3 7420 chr3R 21761126 exon CG42335 + chr3R 21764836 intron CG42335 + chr3R 21768546 exon CG42335 + chr3R_5_21760001 chr3R_21760001 RAL-852 737 chr3R 21800492 21800517 chr3R 21800577 21800602 7 85 2.5 1.5 2.0 2.3 110 chr3R 21800492 intron CASK - chr3R 21800547 intron CASK - chr3R 21800602 intron CASK - chr3R_7_21800001 chr3R_21800001 RAL-852 738 chr3R 21853669 21853670 chr3R 21907534 21907534 4 53866 6.5 12.0 9.2 0.4 53865 chr3R 21853669 intron glec - chr3R 21880602 exon,3` UTR P5CDh2 +,CR45046 - chr3R 21907534 intergenic CG6678 + chr3R_4_21880001 chr3R_21880001 RAL-852 739 chr3R 8339246 8339247 chr3R 21907534 21907534 9 13568288 11.0 12.0 11.5 0.7 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-852 740 chr3R 17389054 17389054 chr3R 21907534 21907534 8 4518480 2.5 12.0 7.2 1.0 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_8_19645001 chr3R_19645001 RAL-852 741 chr3R 21337429 21337429 chr3R 21907534 21907534 6 570105 4.5 12.0 8.2 0.7 570105 chr3R 21337429 intron CG16791 - chr3R 21622482 intron E2f - chr3R 21907534 intergenic CG6678 + chr3R_6_21620001 chr3R_21620001 RAL-852 742 chr3R 21907534 21907534 chr3R 28831799 28831804 18 6924268 12.5 5.5 9.0 1.8 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_18_25365001 chr3R_25365001 RAL-852 743 chr3R 8339246 8339247 chr3R 21907535 21907535 10 13568288 11.0 11.5 11.2 0.8 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 RAL-852 744 chr3R 9620954 9620959 chr3R 21907535 21907535 9 12286579 0.0 11.5 5.8 1.3 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_9_15760001 chr3R_15760001 RAL-852 745 chr3R 21907535 21907535 chr3R 28831801 28831802 58 6924266 12.5 5.5 9.0 5.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_58_25365001 chr3R_25365001 RAL-852 746 chr3R 9620956 9620959 chr3R 21907536 21907536 4 12286579 0.0 11.5 5.8 0.6 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-852 747 chr3R 21907536 21907536 chr3R 28831798 28831802 51 6924266 12.5 5.5 9.0 5.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_51_25365001 chr3R_25365001 RAL-852 748 chr3R 21907536 21907536 chr3R 29013337 29013340 8 7105804 12.5 8.0 10.2 0.7 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_8_25460001 chr3R_25460001 RAL-852 749 chr3R 22179089 22179123 chr3R 22179166 22179200 5 77 1.0 1.0 1.0 2.5 111 chr3R 22179089 intron SKIP + chr3R 22179144 intron SKIP + chr3R 22179200 intron SKIP + chr3R_5_22175001 chr3R_22175001 RAL-852 750 chr3R 22239491 22239501 chr3R 22248550 22248561 roo 4 9060 2.0 0.0 1.0 2.0 9070 chr3R 22239491 intron SKIP + chr3R 22244026 intron SKIP + chr3R 22248561 intron SKIP + chr3R_4_22240001 chr3R_22240001 RAL-852 751 chr3R 22450542 22450576 chr3R 22453182 22453216 NOF 7 2640 2.0 1.0 1.5 2.8 2674 chr3R 22450542 intron CG34376 + chr3R 22451879 intron CG34376 + chr3R 22453216 intron CG34376 + chr3R_7_22450001 chr3R_22450001 RAL-852 752 chr3R 22769092 22769115 chr3R 22769168 22769192 4 76 1.0 2.0 1.5 1.6 100 chr3R 22769092 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769142 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769192 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_4_22765001 chr3R_22765001 RAL-852 753 chr3R 22804674 22804699 chr3R 22804751 22804777 6 78 1.0 1.5 1.2 2.7 103 chr3R 22804674 intron CG7031 + chr3R 22804726 intron CG7031 + chr3R 22804777 exon CG7031 + chr3R_6_22800001 chr3R_22800001 RAL-852 754 chr3R 22842396 22842418 chr3R 22842494 22842517 4 98 2.5 2.5 2.5 1.1 121 chr3R 22842396 intergenic not near genes chr3R 22842456 intergenic not near genes chr3R 22842517 intergenic not near genes chr3R_4_22840001 chr3R_22840001 RAL-852 755 chr3R 22919158 22919186 chr3R 22919255 22919283 7 96 2.5 1.0 1.8 2.5 125 chr3R 22919158 intron klg + chr3R 22919220 intron klg + chr3R 22919283 intron klg + chr3R_7_22915001 chr3R_22915001 RAL-852 756 chr3R 23064191 23064198 chr3R 23064300 23064307 4 109 2.5 3.5 3.0 1.0 116 chr3R 23064191 exon CG17111 - chr3R 23064249 intron CG17111 - chr3R 23064307 exon CG17111 - chr3R_4_23060001 chr3R_23060001 RAL-852 757 chr3R 23064876 23064902 chr3R 23064967 23064993 4 91 0.0 1.0 0.5 2.7 117 chr3R 23064876 intron CG17111 - chr3R 23064934 intron CG17111 - chr3R 23064993 intron CG17111 - chr3R_4_23060001 chr3R_23060001 RAL-852 758 chr3R 23073652 23073680 chr3R 23073741 23073769 9 89 3.0 1.0 2.0 3.0 117 chr3R 23073652 intron CG13830 - chr3R 23073710 intron CG13830 - chr3R 23073769 intron CG13830 - chr3R_9_23070001 chr3R_23070001 RAL-852 759 chr3R 23090404 23090419 chr3R 23090486 23090502 5 83 2.5 1.5 2.0 1.7 98 chr3R 23090404 intron CG13830 - chr3R 23090453 intron CG13830 - chr3R 23090502 intron CG13830 - chr3R_5_23090001 chr3R_23090001 RAL-852 760 chr3R 23662852 23662868 chr3R 23662977 23662993 4 125 2.5 2.0 2.2 1.2 141 chr3R 23662852 intron CG31145 - chr3R 23662922 intron CG31145 - chr3R 23662993 intron CG31145 - chr3R_4_23660001 chr3R_23660001 RAL-852 761 chr3R 23684698 23684724 chr3R 23685182 23685209 roo 5 485 0.5 1.0 0.8 2.8 511 chr3R 23684698 exon CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685209 exon CG18754 + chr3R_5_23680001 chr3R_23680001 RAL-852 762 chr3R 23944911 23944931 chr3R 23944996 23945015 6 85 0.0 2.0 1.0 3.0 104 chr3R 23944911 intron CG12268 - chr3R 23944963 intron CG12268 - chr3R 23945015 intron CG12268 - chr3R_6_23940001 chr3R_23940001 RAL-852 763 chr3R 24076942 24076948 chr3R 24078409 24078414 hobo 4 1467 2.5 3.0 2.8 1.1 1472 chr3R 24076942 intron 4EHP - chr3R 24077678 intron 4EHP - chr3R 24078414 intron 4EHP - chr3R_4_24075001 chr3R_24075001 RAL-852 764 chr3R 21907534 21907535 chr3R 24389465 24389465 13 2481930 12.5 5.5 9.0 1.3 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_13_23145001 chr3R_23145001 RAL-852 765 chr3R 24434247 24434263 chr3R 24434325 24434340 4 78 1.0 2.5 1.8 1.4 93 chr3R 24434247 intron nAChRalpha1 - chr3R 24434294 intron nAChRalpha1 - chr3R 24434340 intron nAChRalpha1 - chr3R_4_24430001 chr3R_24430001 RAL-852 766 chr3R 24730097 24730116 chr3R 24732475 24732488 Doc 4 2374 1.0 0.0 0.5 2.7 2391 chr3R 24730097 intron tok + chr3R 24731292 intron tok + chr3R 24732488 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-852 767 chr3R 24912495 24912508 chr3R 24912576 24912590 4 82 1.5 1.5 1.5 1.6 95 chr3R 24912495 intergenic CR44267 + chr3R 24912542 intergenic CR44267 + chr3R 24912590 intergenic CR44267 + chr3R_4_24910001 chr3R_24910001 RAL-852 768 chr3R 25004906 25004918 chr3R 25004989 25005001 4 83 0.0 2.0 1.0 2.0 95 chr3R 25004906 intron tnc + chr3R 25004954 intron tnc + chr3R 25005001 intron tnc + chr3R_4_25000001 chr3R_25000001 RAL-852 769 chr3R 25064989 25065016 chr3R 25065071 25065097 5 82 0.0 2.0 1.0 2.5 108 chr3R 25064989 exon veli - chr3R 25065043 intron veli - chr3R 25065097 intron veli - chr3R_5_25065001 chr3R_25065001 RAL-852 770 chr3R 25072761 25072794 chr3R 25072853 25072886 7 92 0.0 2.5 1.2 3.2 125 chr3R 25072761 3` UTR CG9996 - chr3R 25072824 3` UTR CG9996 - chr3R 25072886 3` UTR CG9996 - chr3R_7_25070001 chr3R_25070001 RAL-852 771 chr3R 25386829 25386852 chr3R 25389053 25389076 4 2224 1.5 3.0 2.2 1.2 2247 chr3R 25386829 intron Fur1 - chr3R 25387952 intron Fur1 - chr3R 25389076 intron Fur1 - chr3R_4_25385001 chr3R_25385001 RAL-852 772 chr3R 25652315 25652345 chr3R 25652392 25652422 7 77 0.5 1.0 0.8 3.9 107 chr3R 25652315 intergenic not near genes chr3R 25652368 intergenic not near genes chr3R 25652422 intergenic not near genes chr3R_7_25650001 chr3R_25650001 RAL-852 773 chr3R 25689132 25689154 chr3R 25689240 25689262 6 108 1.5 2.0 1.8 2.1 130 chr3R 25689132 intergenic not near genes chr3R 25689197 intergenic not near genes chr3R 25689262 intergenic not near genes chr3R_6_25685001 chr3R_25685001 RAL-852 774 chr3R 25694196 25694228 chr3R 25694296 25694328 10 100 1.0 2.5 1.8 3.6 132 chr3R 25694196 intergenic not near genes chr3R 25694262 intergenic not near genes chr3R 25694328 intergenic not near genes chr3R_10_25690001 chr3R_25690001 RAL-852 775 chr3R 25738631 25738665 chr3R 25738719 25738753 5 88 1.0 1.0 1.0 2.5 122 chr3R 25738631 intron LpR2 - chr3R 25738692 intron LpR2 - chr3R 25738753 intron LpR2 - chr3R_5_25735001 chr3R_25735001 RAL-852 776 chr3R 25832696 25832722 chr3R 25841876 25841904 roo 4 9182 2.5 3.0 2.8 1.1 9208 chr3R 25832696 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841904 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-852 777 chr3R 25936414 25936446 chr3R 25936514 25936546 9 100 1.0 2.0 1.5 3.6 132 chr3R 25936414 intron CCAP-R - chr3R 25936480 intron CCAP-R - chr3R 25936546 intron CCAP-R - chr3R_9_25935001 chr3R_25935001 RAL-852 778 chr3R 26140542 26140547 chr3R 26140655 26140660 4 113 1.0 2.0 1.5 1.6 118 chr3R 26140542 intergenic not near genes chr3R 26140601 intergenic not near genes chr3R 26140660 intergenic not near genes chr3R_4_26140001 chr3R_26140001 RAL-852 779 chr3R 26144460 26144478 chr3R 26144538 26144556 7 78 0.5 0.5 0.5 4.7 96 chr3R 26144460 intergenic not near genes chr3R 26144508 intergenic not near genes chr3R 26144556 intergenic not near genes chr3R_7_26140001 chr3R_26140001 RAL-852 780 chr3R 26166173 26166208 chr3R 26166259 26166294 11 86 1.0 0.5 0.8 6.1 121 chr3R 26166173 intergenic not near genes chr3R 26166234 intergenic not near genes chr3R 26166294 intergenic not near genes chr3R_11_26165001 chr3R_26165001 RAL-852 781 chr3R 26235487 26235519 chr3R 26235569 26235601 5 81 1.0 1.0 1.0 2.5 114 chr3R 26235487 5` UTR CR42745 + chr3R 26235544 5` UTR CR42745 + chr3R 26235601 5` UTR CR42745 + chr3R_5_26235001 chr3R_26235001 RAL-852 782 chr3R 26292105 26292139 chr3R 26292185 26292219 6 80 1.0 1.0 1.0 3.0 114 chr3R 26292105 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292219 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-852 783 chr3R 26607738 26607769 chr3R 26607814 26607845 4 76 1.5 0.5 1.0 2.0 107 chr3R 26607738 5` UTR CR44951 + chr3R 26607792 5` UTR CR44951 + chr3R 26607845 5` UTR CR44951 + chr3R_4_26605001 chr3R_26605001 RAL-852 784 chr3R 26617036 26617065 chr3R 26617179 26617208 4 143 1.0 1.0 1.0 2.0 172 chr3R 26617036 intergenic not near genes chr3R 26617122 intergenic not near genes chr3R 26617208 intergenic not near genes chr3R_4_26615001 chr3R_26615001 RAL-852 785 chr3R 26697289 26697319 chr3R 26697377 26697408 7 89 0.0 0.5 0.2 5.8 119 chr3R 26697289 intergenic amon - chr3R 26697348 intergenic amon - chr3R 26697408 intergenic amon - chr3R_7_26695001 chr3R_26695001 RAL-852 786 chr3R 26960738 26960752 chr3R 26960826 26960840 4 88 5.0 2.5 3.8 0.8 102 chr3R 26960738 intergenic Tsp97E - chr3R 26960789 intergenic Tsp97E - chr3R 26960840 intergenic Tsp97E - chr3R_4_26960001 chr3R_26960001 RAL-852 787 chr3R 27027693 27027703 chr3R 27027775 27027784 5 82 2.0 2.5 2.2 1.6 91 chr3R 27027693 intron RYa-R + chr3R 27027738 intron RYa-R + chr3R 27027784 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-852 788 chr3R 27342793 27342824 chr3R 27351372 27351400 Tirant 6 8580 1.5 1.0 1.2 2.7 8607 chr3R 27342793 intron CG42534 + chr3R 27347096 intron CG42534 + chr3R 27351400 intron CG42534 + chr3R_6_27345001 chr3R_27345001 RAL-852 789 chr3R 27385687 27385716 chr3R 27385958 27385980 5 269 2.0 0.5 1.2 2.3 293 chr3R 27385687 intron side - chr3R 27385834 intron side - chr3R 27385980 intron side - chr3R_5_27385001 chr3R_27385001 RAL-852 790 chr3R 27494328 27494351 chr3R 27494447 27494470 5 118 1.0 1.0 1.0 2.5 142 chr3R 27494328 intergenic not near genes chr3R 27494399 intergenic not near genes chr3R 27494470 intergenic not near genes chr3R_5_27490001 chr3R_27490001 RAL-852 791 chr3R 27574109 27574132 chr3R 27574506 27574531 5 398 1.0 0.5 0.8 2.8 422 chr3R 27574109 intron wdb - chr3R 27574320 intron wdb - chr3R 27574531 intron wdb - chr3R_5_27570001 chr3R_27570001 RAL-852 792 chr3R 27622820 27622851 chr3R 27622907 27622936 11 87 1.0 2.0 1.5 4.4 116 chr3R 27622820 intron Tusp + chr3R 27622878 intron Tusp + chr3R 27622936 intron Tusp + chr3R_11_27620001 chr3R_27620001 RAL-852 793 chr3R 27627094 27627117 chr3R 27627192 27627217 4 100 0.0 0.5 0.2 3.3 123 chr3R 27627094 intron Tusp + chr3R 27627156 intron Tusp + chr3R 27627217 intron Tusp + chr3R_4_27625001 chr3R_27625001 RAL-852 794 chr3R 27648597 27648869 chr3R 27648676 27648945 8 78 1.5 0.0 0.8 4.4 348 chr3R 27648597 intron tau - chr3R 27648771 intron tau - chr3R 27648945 intron tau - chr3R_8_27645001 chr3R_27645001 RAL-852 795 chr3R 27725564 27725590 chr3R 27731005 27731032 I-element 5 5442 1.5 1.0 1.2 2.3 5468 chr3R 27725564 intergenic not near genes chr3R 27728298 intergenic not near genes chr3R 27731032 intergenic not near genes chr3R_5_27725001 chr3R_27725001 RAL-852 796 chr3R 27779273 27779287 chr3R 27779350 27779364 7 77 3.5 2.5 3.0 1.8 91 chr3R 27779273 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779364 intron CG34353 - chr3R_7_27775001 chr3R_27775001 RAL-852 797 chr3R 27786875 27786887 chr3R 27787018 27787031 4 143 1.0 1.5 1.2 1.8 156 chr3R 27786875 intron CG34353 - chr3R 27786953 intron CG34353 - chr3R 27787031 intron CG34353 - chr3R_4_27785001 chr3R_27785001 RAL-852 798 chr3R 27856762 27856784 chr3R 27858245 27858267 hopper2 6 1483 1.5 2.0 1.8 2.1 1505 chr3R 27856762 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858267 intron CG34353 - chr3R_6_27855001 chr3R_27855001 RAL-852 799 chr3R 27862963 27862980 chr3R 27868266 27868285 Transpac 4 5304 1.0 0.0 0.5 2.7 5322 chr3R 27862963 intron CG34353 - chr3R 27865624 intron CG34353 - chr3R 27868285 intron CG34353 - chr3R_4_27865001 chr3R_27865001 RAL-852 800 chr3R 27875703 27875713 chr3R 27882758 27882768 297 5 7055 4.5 3.0 3.8 1.0 7065 chr3R 27875703 intron CG34353 - chr3R 27879236 intron CG34353 - chr3R 27882768 intron CG34353 - chr3R_5_27875001 chr3R_27875001 RAL-852 801 chr3R 27953370 27953380 chr3R 27953502 27953512 4 132 2.5 1.5 2.0 1.3 142 chr3R 27953370 intron CG4951 - chr3R 27953441 intron CG4951 - chr3R 27953512 exon CG4951 - chr3R_4_27950001 chr3R_27950001 RAL-852 802 chr3R 28106354 28106377 chr3R 28106441 28106464 7 86 2.5 1.5 2.0 2.3 110 chr3R 28106354 intergenic not near genes chr3R 28106409 intergenic not near genes chr3R 28106464 intergenic not near genes chr3R_7_28105001 chr3R_28105001 RAL-852 803 chr3R 28209294 28209301 chr3R 28209481 28209488 4 187 0.5 2.5 1.5 1.6 194 chr3R 28209294 intron CG34354 + chr3R 28209391 intron CG34354 + chr3R 28209488 intron CG34354 + chr3R_4_28205001 chr3R_28205001 RAL-852 804 chr3R 28282991 28283019 chr3R 28283620 28283648 8 629 1.0 2.5 1.8 2.9 657 chr3R 28282991 exon CG34436 + chr3R 28283320 exon CG34436 + chr3R 28283648 intergenic CG34437 +,CG34436 + chr3R_8_28280001 chr3R_28280001 RAL-852 805 chr3R 28302103 28302130 chr3R 28302541 28302569 jockey 5 439 3.0 1.5 2.2 1.6 466 chr3R 28302103 intergenic not near genes chr3R 28302336 intergenic not near genes chr3R 28302569 intergenic not near genes chr3R_5_28300001 chr3R_28300001 RAL-852 806 chr3R 28407708 28407732 chr3R 28407794 28407817 7 86 3.0 3.5 3.2 1.7 109 chr3R 28407708 intergenic not near genes chr3R 28407762 intergenic not near genes chr3R 28407817 intergenic not near genes chr3R_7_28405001 chr3R_28405001 RAL-852 807 chr3R 28478421 28478447 chr3R 28478502 28478527 4 80 0.5 3.0 1.8 1.4 106 chr3R 28478421 intergenic not near genes chr3R 28478474 intergenic not near genes chr3R 28478527 intergenic not near genes chr3R_4_28475001 chr3R_28475001 RAL-852 808 chr3R 28479155 28479164 chr3R 28479238 28479246 5 83 0.0 2.0 1.0 2.5 91 chr3R 28479155 intergenic not near genes chr3R 28479200 intergenic not near genes chr3R 28479246 intergenic not near genes chr3R_5_28475001 chr3R_28475001 RAL-852 809 chr3R 28484353 28484375 chr3R 28486270 28486292 20 1917 23.5 29.5 26.5 0.7 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_20_28485001 chr3R_28485001 RAL-852 810 chr3R 28616478 28616501 chr3R 28616572 28616595 5 94 3.0 1.0 2.0 1.7 117 chr3R 28616478 intron CG10011 - chr3R 28616536 intron CG10011 - chr3R 28616595 intron CG10011 - chr3R_5_28615001 chr3R_28615001 RAL-852 811 chr3R 28830885 28830907 chr3R 28830963 28830985 4 78 1.0 0.5 0.8 2.2 100 chr3R 28830885 intron WASp - chr3R 28830935 intron WASp - chr3R 28830985 intron WASp - chr3R_4_28830001 chr3R_28830001 RAL-852 812 chr3R 21907535 21907536 chr3R 28831798 28831798 4 6924263 12.5 5.5 9.0 0.4 6924263 chr3R 21907535 intergenic CG6678 + chr3R 25369666 intron Fur1 - chr3R 28831798 intron WASp - chr3R_4_25365001 chr3R_25365001 RAL-852 813 chr3R 21907534 21907536 chr3R 28831799 28831802 113 6924266 12.5 5.5 9.0 11.3 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_113_25365001 chr3R_25365001 RAL-852 814 chr3R 29009961 29009984 chr3R 29010067 29010088 4 105 0.5 1.5 1.0 2.0 127 chr3R 29009961 intron wat - chr3R 29010024 intron wat - chr3R 29010088 intron wat - chr3R_4_29010001 chr3R_29010001 RAL-852 815 chr3R 21907534 21907534 chr3R 29013339 29013340 7 7105805 12.5 8.5 10.5 0.6 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_7_25460001 chr3R_25460001 RAL-852 816 chr3R 29032743 29032763 chr3R 29032820 29032840 5 77 0.5 0.0 0.2 4.2 97 chr3R 29032743 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032792 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032840 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_5_29030001 chr3R_29030001 RAL-852 817 chr3R 29079403 29079410 chr3R 29080775 29080782 NOF 4 1372 0.5 1.5 1.0 2.0 1379 chr3R 29079403 intron CG11873 + chr3R 29080092 intron CG11873 + chr3R 29080782 intron CG11873 + chr3R_4_29080001 chr3R_29080001 RAL-852 818 chr3R 29237254 29237283 chr3R 29239275 29239304 6 2021 7.5 2.5 5.0 1.0 2050 chr3R 29237254 exon CG11951 - chr3R 29238279 intron CG11951 - chr3R 29239304 exon CG31427 - chr3R_6_29235001 chr3R_29235001 RAL-852 819 chr3R 29406614 29406644 chr3R 29407900 29407929 jockey 8 1286 2.5 0.5 1.5 3.2 1315 chr3R 29406614 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407929 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-852 820 chr3R 29447290 29447312 chr3R 29447373 29447395 5 83 1.5 3.0 2.2 1.6 105 chr3R 29447290 intron Ptp99A + chr3R 29447342 intron Ptp99A + chr3R 29447395 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-852 821 chr3R 29449356 29449391 chr3R 29449433 29449469 4 77 0.5 0.0 0.2 3.3 113 chr3R 29449356 intron Ptp99A + chr3R 29449412 intron Ptp99A + chr3R 29449469 intron Ptp99A + chr3R_4_29445001 chr3R_29445001 RAL-852 822 chr3R 29498910 29498930 chr3R 29499040 29499059 5 130 0.5 0.0 0.2 4.2 149 chr3R 29498910 3` UTR CG2010 + chr3R 29498984 intergenic Trc8 -,CG2010 + chr3R 29499059 3` UTR Trc8 - chr3R_5_29495001 chr3R_29495001 RAL-852 823 chr3R 29590375 29590391 chr3R 29590468 29590483 7 93 2.0 1.5 1.8 2.5 108 chr3R 29590375 intron CG31041 - chr3R 29590429 intron CG31041 - chr3R 29590483 intron CG31041 - chr3R_7_29590001 chr3R_29590001 RAL-852 824 chr3R 29627582 29627710 chr3R 29627672 29627820 6 103 1.5 1.5 1.5 2.4 238 chr3R 29627582 intergenic not near genes chr3R 29627701 intergenic not near genes chr3R 29627820 intergenic not near genes chr3R_6_29625001 chr3R_29625001 RAL-852 825 chr3R 29882017 29882048 chr3R 29891174 29891205 roo 9 9157 2.0 0.0 1.0 4.5 9188 chr3R 29882017 intron CG31038 + chr3R 29886611 intron CG31038 + chr3R 29891205 intron CG31038 + chr3R_9_29885001 chr3R_29885001 RAL-852 826 chr3R 29950581 29950596 chr3R 29950658 29950669 7 76 0.5 2.5 1.5 2.8 88 chr3R 29950581 intergenic TkR99D - chr3R 29950625 intergenic TkR99D - chr3R 29950669 intergenic TkR99D - chr3R_7_29950001 chr3R_29950001 RAL-852 827 chr3R 29959271 29959299 chr3R 29959350 29959375 6 78 1.0 1.0 1.0 3.0 104 chr3R 29959271 intron TkR99D - chr3R 29959323 intron TkR99D - chr3R 29959375 intron TkR99D - chr3R_6_29955001 chr3R_29955001 RAL-852 828 chr3R 30147852 30147870 chr3R 30147938 30147956 4 86 0.0 2.0 1.0 2.0 104 chr3R 30147852 intron AdoR - chr3R 30147904 intron AdoR - chr3R 30147956 intron AdoR - chr3R_4_30145001 chr3R_30145001 RAL-852 829 chr3R 30170774 30170784 chr3R 30170861 30170870 5 86 2.0 2.0 2.0 1.7 96 chr3R 30170774 intron CG31028 - chr3R 30170822 intron CG31028 - chr3R 30170870 intron CG31028 - chr3R_5_30170001 chr3R_30170001 RAL-852 830 chr3R 30238759 30238778 chr3R 30239923 30239942 1360 4 1164 1.5 0.0 0.8 2.2 1183 chr3R 30238759 intergenic not near genes chr3R 30239350 intergenic not near genes chr3R 30239942 intergenic not near genes chr3R_4_30235001 chr3R_30235001 RAL-852 831 chr3R 30330499 30330523 chr3R 30330579 30330603 5 79 2.0 1.0 1.5 2.0 104 chr3R 30330499 intron hdc + chr3R 30330551 intron hdc + chr3R 30330603 intron hdc + chr3R_5_30330001 chr3R_30330001 RAL-852 832 chr3R 30480487 30480510 chr3R 30482955 30482978 jockey 6 2468 1.5 1.5 1.5 2.4 2491 chr3R 30480487 intron PH4alphaEFB + chr3R 30481732 intron PH4alphaEFB + chr3R 30482978 intron PH4alphaEFB + chr3R_6_30480001 chr3R_30480001 RAL-852 833 chr3R 30498422 30498434 chr3R 30498622 30498634 5 200 0.0 1.5 0.8 2.8 212 chr3R 30498422 intron PH4alphaNE1 - chr3R 30498528 intron PH4alphaNE1 - chr3R 30498634 intron PH4alphaNE1 - chr3R_5_30495001 chr3R_30495001 RAL-852 834 chr3R 30627605 30627638 chr3R 30627685 30627718 9 79 1.5 0.5 1.0 4.5 113 chr3R 30627605 exon CG2267 - chr3R 30627662 exon CG2267 - chr3R 30627718 exon CG2267 - chr3R_9_30625001 chr3R_30625001 RAL-852 835 chr3R 30636403 30636424 chr3R 30636484 30636505 7 81 1.5 1.5 1.5 2.8 102 chr3R 30636403 intergenic not near genes chr3R 30636454 intergenic not near genes chr3R 30636505 intergenic not near genes chr3R_7_30635001 chr3R_30635001 RAL-852 836 chr3R 30679520 30679546 chr3R 30686989 30687015 blood 6 7469 0.0 0.0 0.0 6.0 7495 chr3R 30679520 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687015 intergenic not near genes chr3R_6_30680001 chr3R_30680001 RAL-852 837 chr3R 31042109 31042131 chr3R 31042196 31042218 4 87 3.5 1.5 2.5 1.1 109 chr3R 31042109 intron CanA1 + chr3R 31042164 intron CanA1 + chr3R 31042218 intron CanA1 + chr3R_4_31040001 chr3R_31040001 RAL-852 838 chr3R 31069661 31069676 chr3R 31069755 31069770 4 94 1.0 2.0 1.5 1.6 109 chr3R 31069661 intron Sox100B + chr3R 31069716 intron Sox100B + chr3R 31069770 intron Sox100B + chr3R_4_31065001 chr3R_31065001 RAL-852 839 chr3R 31279379 31279394 chr3R 31285570 31285583 diver 4 6190 3.5 4.0 3.8 0.8 6204 chr3R 31279379 intergenic not near genes chr3R 31282481 intergenic not near genes chr3R 31285583 intergenic not near genes chr3R_4_31280001 chr3R_31280001 RAL-852 840 chr3R 31413099 31413119 chr3R 31418299 31418319 copia 6 5200 0.5 0.0 0.2 5.0 5220 chr3R 31413099 intron Gprk2 + chr3R 31415709 intron Gprk2 + chr3R 31418319 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 RAL-852 841 chr3R 31426896 31426910 chr3R 31426988 31427002 4 92 0.0 2.5 1.2 1.8 106 chr3R 31426896 intron Gprk2 + chr3R 31426949 intron Gprk2 + chr3R 31427002 intron Gprk2 + chr3R_4_31425001 chr3R_31425001 RAL-852 842 chr3R 31516978 31516996 chr3R 31517120 31517138 4 142 5.5 2.5 4.0 0.8 160 chr3R 31516978 intergenic not near genes chr3R 31517058 intergenic not near genes chr3R 31517138 intergenic not near genes chr3R_4_31515001 chr3R_31515001 RAL-852 843 chr3R 31691532 31691555 chr3R 31696298 31696321 Doc 6 4766 1.5 4.5 3.0 1.5 4789 chr3R 31691532 intergenic not near genes chr3R 31693926 intergenic not near genes chr3R 31696321 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-852 844 chr3R 31699723 31699740 chr3R 31699804 31699822 7 81 3.5 1.0 2.2 2.2 99 chr3R 31699723 intergenic not near genes chr3R 31699772 intergenic not near genes chr3R 31699822 intergenic not near genes chr3R_7_31695001 chr3R_31695001 RAL-852 845 chr3R 31976545 31976566 chr3R 31976826 31976846 4 281 0.0 1.5 0.8 2.2 301 chr3R 31976545 intron heph - chr3R 31976696 intron heph - chr3R 31976846 intron heph - chr3R_4_31975001 chr3R_31975001 RAL-852 846 chr3R 32043356 32043388 chr3R 32043535 32043567 7 180 9.0 11.5 10.2 0.6 211 chr3R 32043356 intergenic not near genes chr3R 32043462 intergenic not near genes chr3R 32043567 intergenic not near genes chr3R_7_32040001 chr3R_32040001 RAL-852 847 chr4 959624 959657 chr4 959803 959835 5 178 0.5 0.5 0.5 3.3 211 chr4 959624 intergenic CR44030 +,CR45201 - chr4 959730 5` UTR CR44030 + chr4 959835 5` UTR CR44030 + chr4_5_955001 chr4_955001 RAL-852 848 chrX 318471 318496 chrX 323557 323582 flea 5 5086 1.5 1.5 1.5 2.0 5111 chrX 318471 intron,intron CG3777 +,CG32816 - chrX 321026 intron,intron CG3777 +,CG32816 - chrX 323582 intron,intron CG3777 +,CG32816 - chrX_5_320001 chrX_320001 RAL-852 849 chrX 617978 618005 chrX 618058 618085 7 80 0.5 1.5 1.0 3.5 107 chrX 617978 intron CG13366 - chrX 618032 intron CG13366 - chrX 618085 intron CG13366 - chrX_7_615001 chrX_615001 RAL-852 850 chrX 667647 667672 chrX 667731 667756 5 84 1.5 0.0 0.8 2.8 109 chrX 667647 intergenic not near genes chrX 667702 intergenic not near genes chrX 667756 intergenic not near genes chrX_5_665001 chrX_665001 RAL-852 851 chrX 670269 670297 chrX 670349 670377 4 80 0.0 0.0 0.0 4.0 108 chrX 670269 intergenic not near genes chrX 670323 intergenic not near genes chrX 670377 intergenic not near genes chrX_4_670001 chrX_670001 RAL-852 852 chrX 706807 706827 chrX 707171 707187 4 363 0.0 2.0 1.0 2.0 380 chrX 706807 intron sdk + chrX 706997 intron sdk + chrX 707187 intron sdk + chrX_4_705001 chrX_705001 RAL-852 853 chrX 906703 906731 chrX 908492 908520 S-element 6 1789 1.5 4.5 3.0 1.5 1817 chrX 906703 intron CG43867 - chrX 907612 intron CG43867 - chrX 908520 intron CG43867 - chrX_6_905001 chrX_905001 RAL-852 854 chrX 1053117 1053123 chrX 16983076 16983076 4 15929957 10.0 6.0 8.0 0.4 15929959 chrX 1053117 intron CR44779 + chrX 9018096 intron,intron rdgA +,CR43836 - chrX 16983076 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-852 855 chrX 1309548 1309567 chrX 1309631 1309651 4 82 0.5 1.0 0.8 2.2 103 chrX 1309548 intron DAAM - chrX 1309600 intron DAAM - chrX 1309651 intron DAAM - chrX_4_1305001 chrX_1305001 RAL-852 856 chrX 1357777 1357797 chrX 1367947 1367967 Doc 4 10170 2.0 0.5 1.2 1.8 10190 chrX 1357777 intergenic png - chrX 1362872 intergenic not near genes chrX 1367967 intergenic not near genes chrX_4_1360001 chrX_1360001 RAL-852 857 chrX 1954892 1954910 chrX 1962831 1962850 Stalker2 4 7940 0.5 0.5 0.5 2.7 7958 chrX 1954892 intron Hr4 + chrX 1958871 intron Hr4 + chrX 1962850 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-852 858 chrX 2098609 2098636 chrX 2098686 2098715 7 77 2.5 1.0 1.8 2.5 106 chrX 2098609 intron csw + chrX 2098662 intron csw + chrX 2098715 intron csw + chrX_7_2095001 chrX_2095001 RAL-852 859 chrX 2535825 2535853 chrX 2535900 2535929 5 76 1.5 2.5 2.0 1.7 104 chrX 2535825 intron trol - chrX 2535877 intron trol - chrX 2535929 intron trol - chrX_5_2535001 chrX_2535001 RAL-852 860 chrX 2578811 2578844 chrX 2578903 2578936 7 92 0.5 0.5 0.5 4.7 125 chrX 2578811 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578936 intergenic Vha36-3 -,Pdfr + chrX_7_2575001 chrX_2575001 RAL-852 861 chrX 2844915 2844927 chrX 2852325 2852337 mdg1 4 7410 1.0 1.5 1.2 1.8 7422 chrX 2844915 intron kirre + chrX 2848626 intron kirre + chrX 2852337 intron kirre + chrX_4_2845001 chrX_2845001 RAL-852 862 chrX 2888115 2888144 chrX 2888193 2888222 7 78 1.0 0.0 0.5 4.7 107 chrX 2888115 intron kirre + chrX 2888168 intron kirre + chrX 2888222 intron kirre + chrX_7_2885001 chrX_2885001 RAL-852 863 chrX 3058022 3058037 chrX 3058263 3058278 pogo 4 241 0.5 0.0 0.2 3.3 256 chrX 3058022 intron kirre + chrX 3058150 intron kirre + chrX 3058278 intron kirre + chrX_4_3055001 chrX_3055001 RAL-852 864 chrX 3197765 3197782 chrX 3197878 3197895 4 113 2.5 1.0 1.8 1.4 130 chrX 3197765 intron dnc + chrX 3197830 intron dnc + chrX 3197895 intron dnc + chrX_4_3195001 chrX_3195001 RAL-852 865 chrX 3214136 3214167 chrX 3214257 3214288 4 120 0.5 0.0 0.2 3.3 152 chrX 3214136 intron dnc + chrX 3214212 intron dnc + chrX 3214288 intron dnc + chrX_4_3210001 chrX_3210001 RAL-852 866 chrX 3326138 3326165 chrX 3326530 3326559 5 394 3.0 2.0 2.5 1.4 421 chrX 3326138 intron,intron dnc +,CR44886 - chrX 3326348 intron,intron dnc +,CR44886 - chrX 3326559 intron,intron dnc +,CR44886 - chrX_5_3325001 chrX_3325001 RAL-852 867 chrX 3597552 3597578 chrX 3619720 3619746 roo 7 22168 0.0 0.0 0.0 7.0 22194 chrX 3597552 intron AstA-R1 + chrX 3608649 intron AstA-R1 + chrX 3619746 intron AstA-R1 + chrX_7_3605001 chrX_3605001 RAL-852 868 chrX 3629850 3629879 chrX 3629935 3629964 5 85 1.5 1.5 1.5 2.0 114 chrX 3629850 intron AstA-R1 + chrX 3629907 intron AstA-R1 + chrX 3629964 intron AstA-R1 + chrX_5_3625001 chrX_3625001 RAL-852 869 chrX 3842329 3842347 chrX 3842570 3842588 pogo 6 241 1.0 1.0 1.0 3.0 259 chrX 3842329 intron ec + chrX 3842458 intron ec + chrX 3842588 intron ec + chrX_6_3840001 chrX_3840001 RAL-852 870 chrX 3866109 3866134 chrX 3866186 3866212 9 78 0.5 1.0 0.8 5.0 103 chrX 3866109 intron yin - chrX 3866160 intron yin - chrX 3866212 intron yin - chrX_9_3865001 chrX_3865001 RAL-852 871 chrX 3986868 3986894 chrX 3994501 3994527 412 7 7633 1.5 2.5 2.0 2.3 7659 chrX 3986868 intergenic not near genes chrX 3990698 intergenic not near genes chrX 3994527 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-852 872 chrX 4047472 4047500 chrX 4047585 4047613 7 113 0.5 2.5 1.5 2.8 141 chrX 4047472 intergenic CR45482 - chrX 4047542 intergenic CR45482 - chrX 4047613 3` UTR CR45482 - chrX_7_4045001 chrX_4045001 RAL-852 873 chrX 4101885 4101896 chrX 4101965 4101976 5 79 0.5 2.0 1.2 2.3 91 chrX 4101885 exon CG15375 + chrX 4101930 exon CG15375 + chrX 4101976 exon CG15375 + chrX_5_4100001 chrX_4100001 RAL-852 874 chrX 4157902 4157917 chrX 4164955 4164970 297 4 7053 0.5 1.5 1.0 2.0 7068 chrX 4157902 intron Fas2 - chrX 4161436 intron Fas2 - chrX 4164970 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-852 875 chrX 4263616 4263629 chrX 4263703 4263716 5 87 1.0 0.5 0.8 2.8 100 chrX 4263616 intergenic not near genes chrX 4263666 intergenic not near genes chrX 4263716 intergenic not near genes chrX_5_4260001 chrX_4260001 RAL-852 876 chrX 4396990 4397004 chrX 4397074 4397089 5 85 1.0 2.0 1.5 2.0 99 chrX 4396990 intron CR32773 - chrX 4397040 intron CR32773 - chrX 4397089 intron CR32773 - chrX_5_4395001 chrX_4395001 RAL-852 877 chrX 4827649 4827677 chrX 4827730 4827759 8 82 1.0 0.5 0.8 4.4 110 chrX 4827649 intergenic not near genes chrX 4827704 intergenic not near genes chrX 4827759 intergenic not near genes chrX_8_4825001 chrX_4825001 RAL-852 878 chrX 4827978 4827993 chrX 4835349 4835362 Stalker4 5 7369 3.5 1.0 2.2 1.6 7384 chrX 4827978 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835362 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-852 879 chrX 5096274 5096301 chrX 5103839 5103866 springer 4 7565 1.0 1.5 1.2 1.8 7592 chrX 5096274 intron,intron CG15465 +,rg + chrX 5100070 intron,intron CG15465 +,rg + chrX 5103866 intron,intron CG15465 +,rg + chrX_4_5100001 chrX_5100001 RAL-852 880 chrX 5338709 5338729 chrX 5339962 5339982 jockey 5 1251 0.5 0.0 0.2 4.2 1273 chrX 5338709 intergenic not near genes chrX 5339346 intergenic not near genes chrX 5339982 intergenic SK + chrX_5_5335001 chrX_5335001 RAL-852 881 chrX 5884166 5884184 chrX 5884407 5884424 pogo 4 240 2.5 0.5 1.5 1.6 258 chrX 5884166 intron CR45668 - chrX 5884295 intron CR45668 - chrX 5884424 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-852 882 chrX 6003291 6003309 chrX 6003372 6003390 6 81 0.0 3.0 1.5 2.4 99 chrX 6003291 intron CR44498 + chrX 6003340 intron CR44498 + chrX 6003390 intron CR44498 + chrX_6_6000001 chrX_6000001 RAL-852 883 chrX 6118697 6118731 chrX 6118779 6118813 4 82 1.0 1.5 1.2 1.8 116 chrX 6118697 intron Ca-alpha1T - chrX 6118755 intron Ca-alpha1T - chrX 6118813 intron Ca-alpha1T - chrX_4_6115001 chrX_6115001 RAL-852 884 chrX 6171585 6171607 chrX 6179016 6179040 Quasimodo 4 7432 1.5 0.5 1.0 2.0 7455 chrX 6171585 intron Ca-alpha1T - chrX 6175312 intron Ca-alpha1T - chrX 6179040 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-852 885 chrX 6392871 6392899 chrX 6397636 6397664 Doc 4 4764 2.5 0.0 1.2 1.8 4793 chrX 6392871 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397664 intergenic not near genes chrX_4_6395001 chrX_6395001 RAL-852 886 chrX 6562820 6562849 chrX 6571301 6571331 Tirant 8 8482 2.5 0.5 1.5 3.2 8511 chrX 6562820 intron CG34417 + chrX 6567076 intron CG34417 + chrX 6571331 intron CG34417 + chrX_8_6565001 chrX_6565001 RAL-852 887 chrX 7023599 7023627 chrX 7030989 7031017 Tabor 7 7390 2.5 1.0 1.8 2.5 7418 chrX 7023599 intron CG12541 - chrX 7027308 intron CG12541 - chrX 7031017 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-852 888 chrX 7069802 7069835 chrX 7069882 7069915 4 80 0.5 0.5 0.5 2.7 113 chrX 7069802 5` UTR CG4607 + chrX 7069858 5` UTR CG4607 + chrX 7069915 5` UTR CG4607 + chrX_4_7065001 chrX_7065001 RAL-852 889 chrX 7123031 7123058 chrX 7123190 7123217 5 159 1.5 3.0 2.2 1.6 186 chrX 7123031 intergenic not near genes chrX 7123124 intergenic not near genes chrX 7123217 intergenic not near genes chrX_5_7120001 chrX_7120001 RAL-852 890 chrX 7125252 7125275 chrX 7134410 7134434 roo 5 9158 1.0 0.0 0.5 3.3 9182 chrX 7125252 intergenic not near genes chrX 7129843 intergenic not near genes chrX 7134434 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-852 891 chrX 7702904 7702924 chrX 7703343 7703360 jockey 5 438 1.5 1.0 1.2 2.3 456 chrX 7702904 intron CHES-1-like - chrX 7703132 intron CHES-1-like - chrX 7703360 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-852 892 chrX 7737160 7737168 chrX 7737242 7737250 4 82 1.0 0.0 0.5 2.7 90 chrX 7737160 5` UTR Tom40 + chrX 7737205 intron Tom40 + chrX 7737250 intron Tom40 + chrX_4_7735001 chrX_7735001 RAL-852 893 chrX 7967246 7967268 chrX 7967327 7967349 7 81 2.0 1.0 1.5 2.8 103 chrX 7967246 intron,intron sws -,sn + chrX 7967298 intron,intron sws -,sn + chrX 7967349 intron,intron sws -,sn + chrX_7_7965001 chrX_7965001 RAL-852 894 chrX 8092286 8092312 chrX 8092370 8092397 5 85 0.5 0.0 0.2 4.2 111 chrX 8092286 intron Ubc-E2H - chrX 8092342 intron Ubc-E2H - chrX 8092397 intron Ubc-E2H - chrX_5_8090001 chrX_8090001 RAL-852 895 chrX 8179987 8180012 chrX 8185113 8185138 4 5126 7.5 3.5 5.5 0.6 5151 chrX 8179987 intron sdt + chrX 8182562 intron sdt + chrX 8185138 intron sdt + chrX_4_8180001 chrX_8180001 RAL-852 896 chrX 8305189 8305214 chrX 8305270 8305294 4 81 0.0 2.0 1.0 2.0 105 chrX 8305189 intron nAChRalpha3 - chrX 8305242 intron nAChRalpha3 - chrX 8305294 intron nAChRalpha3 - chrX_4_8305001 chrX_8305001 RAL-852 897 chrX 8330952 8330979 chrX 8331041 8331068 8 88 0.5 3.5 2.0 2.7 116 chrX 8330952 intron nAChRalpha3 - chrX 8331010 intron nAChRalpha3 - chrX 8331068 intron nAChRalpha3 - chrX_8_8330001 chrX_8330001 RAL-852 898 chrX 8675210 8675228 chrX 8675296 8675314 4 86 3.5 1.5 2.5 1.1 104 chrX 8675210 intergenic not near genes chrX 8675262 intergenic not near genes chrX 8675314 intergenic not near genes chrX_4_8675001 chrX_8675001 RAL-852 899 chrX 8922326 8922362 chrX 8922760 8922796 jockey 5 434 1.0 1.0 1.0 2.5 470 chrX 8922326 intron rdgA + chrX 8922561 intron rdgA + chrX 8922796 intron rdgA + chrX_5_8920001 chrX_8920001 RAL-852 900 chrX 9337940 9337960 chrX 9338032 9338052 4 92 3.0 0.5 1.8 1.4 112 chrX 9337940 intron CG34449 - chrX 9337996 intron CG34449 - chrX 9338052 exon CG34449 - chrX_4_9335001 chrX_9335001 RAL-852 901 chrX 9508132 9508166 chrX 9509650 9509682 jockey 5 1517 2.0 1.0 1.5 2.0 1550 chrX 9508132 intron CG32700 - chrX 9508907 intron CG32700 - chrX 9509682 intron CG32700 - chrX_5_9505001 chrX_9505001 RAL-852 902 chrX 9575801 9575812 chrX 9576120 9576135 mdg3 5 321 1.5 3.0 2.2 1.6 334 chrX 9575801 intron,exon CG32699 -,CG42395 - chrX 9575968 intron,intron CG32699 -,CG42395 - chrX 9576135 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-852 903 chrX 9599172 9599190 chrX 9599250 9599268 6 78 1.5 2.0 1.8 2.1 96 chrX 9599172 intergenic not near genes chrX 9599220 intergenic not near genes chrX 9599268 intergenic not near genes chrX_6_9595001 chrX_9595001 RAL-852 904 chrX 9773365 9773378 chrX 9773447 9773460 4 82 1.0 1.5 1.2 1.8 95 chrX 9773365 intergenic not near genes chrX 9773412 intergenic not near genes chrX 9773460 intergenic not near genes chrX_4_9770001 chrX_9770001 RAL-852 905 chrX 9783048 9783247 chrX 9783128 9783324 6 78 3.0 1.5 2.2 1.9 276 chrX 9783048 intergenic CG32698 + chrX 9783186 intergenic CG32698 + chrX 9783324 5` UTR CG32698 + chrX_6_9780001 chrX_9780001 RAL-852 906 chrX 9784174 9784207 chrX 9784362 9784394 5 188 1.0 1.0 1.0 2.5 220 chrX 9784174 intron CG32698 + chrX 9784284 intron CG32698 + chrX 9784394 intron CG32698 + chrX_5_9780001 chrX_9780001 RAL-852 907 chrX 9791876 9791893 chrX 9791973 9791990 5 97 1.0 2.5 1.8 1.8 114 chrX 9791876 intron CG32698 + chrX 9791933 intron CG32698 + chrX 9791990 intron CG32698 + chrX_5_9790001 chrX_9790001 RAL-852 908 chrX 9794785 9794793 chrX 9794863 9794871 6 78 1.5 1.5 1.5 2.4 86 chrX 9794785 intron CG32698 + chrX 9794828 intron CG32698 + chrX 9794871 intron CG32698 + chrX_6_9790001 chrX_9790001 RAL-852 909 chrX 10035449 10035461 chrX 10035535 10035547 4 86 0.5 4.0 2.2 1.2 98 chrX 10035449 exon Cht6 + chrX 10035498 exon Cht6 + chrX 10035547 exon Cht6 + chrX_4_10035001 chrX_10035001 RAL-852 910 chrX 10138222 10138240 chrX 10145725 10145744 412 4 7504 1.0 1.5 1.2 1.8 7522 chrX 10138222 intron,intron RhoU +,CR44894 - chrX 10141983 intron,intron RhoU +,CR44894 - chrX 10145744 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-852 911 chrX 10202591 10202604 chrX 10202822 10202836 4 232 0.5 3.0 1.8 1.4 245 chrX 10202591 intron CR44894 - chrX 10202714 intron CR44894 - chrX 10202836 intron CR44894 - chrX_4_10200001 chrX_10200001 RAL-852 912 chrX 10259201 10259220 chrX 10259286 10259305 5 84 3.5 3.5 3.5 1.1 104 chrX 10259201 5` UTR,intron Hk -,CR43959 + chrX 10259253 5` UTR,intron Hk -,CR43959 + chrX 10259305 5` UTR,intron Hk -,CR43959 + chrX_5_10255001 chrX_10255001 RAL-852 913 chrX 10361719 10361730 chrX 10361816 10361827 6 97 1.5 1.5 1.5 2.4 108 chrX 10361719 intron l(1)G0289 - chrX 10361773 intron l(1)G0289 - chrX 10361827 intron l(1)G0289 - chrX_6_10360001 chrX_10360001 RAL-852 914 chrX 10431341 10431355 chrX 10431421 10431435 4 80 1.0 0.0 0.5 2.7 94 chrX 10431341 intron CG32683 - chrX 10431388 intron CG32683 - chrX 10431435 intron CG32683 - chrX_4_10430001 chrX_10430001 RAL-852 915 chrX 10543798 10543825 chrX 10543918 10543945 4 119 1.5 2.0 1.8 1.4 147 chrX 10543798 intron spri - chrX 10543872 intron spri - chrX 10543945 intron spri - chrX_4_10540001 chrX_10540001 RAL-852 916 chrX 10550337 10550364 chrX 10550415 10550442 5 78 0.5 1.5 1.0 2.5 105 chrX 10550337 intron spri - chrX 10550390 intron spri - chrX 10550442 intron spri - chrX_5_10550001 chrX_10550001 RAL-852 917 chrX 10550857 10550886 chrX 10552324 10552353 hobo 4 1467 1.5 0.0 0.8 2.2 1496 chrX 10550857 intron spri - chrX 10551605 intron spri - chrX 10552353 intron spri - chrX_4_10550001 chrX_10550001 RAL-852 918 chrX 10686050 10686081 chrX 10691187 10691218 roo 5 5137 0.5 1.5 1.0 2.5 5168 chrX 10686050 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691218 intron X11Lbeta + chrX_5_10685001 chrX_10685001 RAL-852 919 chrX 10803033 10803045 chrX 10803118 10803130 5 85 1.5 1.5 1.5 2.0 97 chrX 10803033 intron Imp - chrX 10803082 intron Imp - chrX 10803130 intron Imp - chrX_5_10800001 chrX_10800001 RAL-852 920 chrX 10824127 10824154 chrX 10824261 10824288 4 134 0.5 1.0 0.8 2.2 161 chrX 10824127 intergenic CR45624 + chrX 10824208 intergenic CR45624 + chrX 10824288 5` UTR CR45624 + chrX_4_10820001 chrX_10820001 RAL-852 921 chrX 10933919 10933943 chrX 10934007 10934031 7 88 0.5 1.5 1.0 3.5 112 chrX 10933919 intron Myo10A + chrX 10933975 intron Myo10A + chrX 10934031 intron Myo10A + chrX_7_10930001 chrX_10930001 RAL-852 922 chrX 11268568 11268589 chrX 11270061 11270082 hopper2 4 1493 1.5 2.0 1.8 1.4 1514 chrX 11268568 intron CG44422 - chrX 11269325 intron CG44422 - chrX 11270082 intron CG44422 - chrX_4_11265001 chrX_11265001 RAL-852 923 chrX 11651216 11651229 chrX 11651307 11651320 4 91 1.5 1.5 1.5 1.6 104 chrX 11651216 intron Ptp10D + chrX 11651268 intron Ptp10D + chrX 11651320 intron Ptp10D + chrX_4_11650001 chrX_11650001 RAL-852 924 chrX 12375491 12375503 chrX 12375588 12375593 4 96 1.0 0.5 0.8 2.2 102 chrX 12375491 intergenic Ir11a - chrX 12375542 intergenic Ir11a - chrX 12375593 intergenic Ir11a - chrX_4_12375001 chrX_12375001 RAL-852 925 chrX 13161703 13161723 chrX 13161780 13161800 6 77 0.5 0.5 0.5 4.0 97 chrX 13161703 3` UTR CG12096 + chrX 13161752 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161800 3` UTR,3` UTR CG12096 +,CG34411 - chrX_6_13160001 chrX_13160001 RAL-852 926 chrX 13172350 13172380 chrX 13172425 13172455 5 75 0.0 1.0 0.5 3.3 105 chrX 13172350 exon CG34411 - chrX 13172402 intron CG34411 - chrX 13172455 intron CG34411 - chrX_5_13170001 chrX_13170001 RAL-852 927 chrX 13708786 13708814 chrX 13709970 13709997 7 1184 10.5 7.0 8.8 0.7 1211 chrX 13708786 intron,intron CG9940 -,NnaD + chrX 13709392 intron,intron CG9940 -,NnaD + chrX 13709997 intron,exon CG9940 -,NnaD + chrX_7_13705001 chrX_13705001 RAL-852 928 chrX 13990893 13990920 chrX 13990968 13990996 4 76 1.5 1.0 1.2 1.8 103 chrX 13990893 5` UTR CR44655 + chrX 13990944 5` UTR CR44655 + chrX 13990996 5` UTR CR44655 + chrX_4_13990001 chrX_13990001 RAL-852 929 chrX 14508599 14508616 chrX 14508698 14508716 7 100 2.5 0.5 1.5 2.8 117 chrX 14508599 intergenic not near genes chrX 14508658 intergenic not near genes chrX 14508716 intergenic not near genes chrX_7_14505001 chrX_14505001 RAL-852 930 chrX 14636459 14636484 chrX 14641900 14641925 I-element 6 5440 2.0 0.0 1.0 3.0 5466 chrX 14636459 intron NetA - chrX 14639192 intron NetA - chrX 14641925 intron NetA - chrX_6_14635001 chrX_14635001 RAL-852 931 chrX 14767947 14767976 chrX 14768027 14768056 4 80 1.5 0.0 0.8 2.2 109 chrX 14767947 intergenic not near genes chrX 14768002 intergenic not near genes chrX 14768056 intergenic not near genes chrX_4_14765001 chrX_14765001 RAL-852 932 chrX 14778035 14778054 chrX 14782831 14782851 Doc 4 4797 1.0 4.0 2.5 1.1 4816 chrX 14778035 intergenic CG5347 + chrX 14780443 intergenic not near genes chrX 14782851 intergenic Ag5r2 - chrX_4_14780001 chrX_14780001 RAL-852 933 chrX 14869911 14869932 chrX 14870053 14870074 5 142 2.0 2.0 2.0 1.7 163 chrX 14869911 intron,intron Flo2 +,CG9518 - chrX 14869992 intron,intron Flo2 +,CG9518 - chrX 14870074 intron,intron Flo2 +,CG9518 - chrX_5_14865001 chrX_14865001 RAL-852 934 chrX 14960399 14960418 chrX 14960540 14960559 6 141 1.0 0.5 0.8 3.3 160 chrX 14960399 intron eag + chrX 14960479 intron eag + chrX 14960559 intron eag + chrX_6_14960001 chrX_14960001 RAL-852 935 chrX 15277634 15277650 chrX 15277719 15277735 5 85 1.5 0.5 1.0 2.5 101 chrX 15277634 intergenic not near genes chrX 15277684 intergenic not near genes chrX 15277735 intergenic not near genes chrX_5_15275001 chrX_15275001 RAL-852 936 chrX 15536700 15536710 chrX 15536777 15536786 5 75 7.5 4.5 6.0 0.7 86 chrX 15536700 intron Ac13E - chrX 15536743 intron Ac13E - chrX 15536786 intron Ac13E - chrX_5_15535001 chrX_15535001 RAL-852 937 chrX 15543273 15543294 chrX 15543354 15543376 4 80 0.0 1.0 0.5 2.7 103 chrX 15543273 intron Ac13E - chrX 15543324 intron Ac13E - chrX 15543376 intron Ac13E - chrX_4_15540001 chrX_15540001 RAL-852 938 chrX 15678046 15678065 chrX 15678123 15678142 6 75 0.5 2.0 1.2 2.7 96 chrX 15678046 intergenic CG12708 + chrX 15678094 intergenic CG12708 + chrX 15678142 intergenic CG12708 + chrX_6_15675001 chrX_15675001 RAL-852 939 chrX 15969490 15969500 chrX 15969707 15969717 4 217 1.0 0.0 0.5 2.7 227 chrX 15969490 intron mmd - chrX 15969604 intron mmd - chrX 15969717 intron mmd - chrX_4_15965001 chrX_15965001 RAL-852 940 chrX 16329434 16329444 chrX 16329515 16329527 4 82 0.0 4.0 2.0 1.3 93 chrX 16329434 intron CG9919 - chrX 16329480 intron CG9919 - chrX 16329527 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-852 941 chrX 16492660 16492676 chrX 16498237 16498253 mdg3 5 5577 1.0 1.5 1.2 2.3 5593 chrX 16492660 intron para - chrX 16495456 intron para - chrX 16498253 intron para - chrX_5_16495001 chrX_16495001 RAL-852 942 chrX 17011734 17011997 chrX 17011880 17012080 5 108 2.0 2.5 2.2 1.6 346 chrX 17011734 intron CG45002 - chrX 17011907 intron CG45002 - chrX 17012080 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-852 943 chrX 17061570 17061594 chrX 17061692 17061716 5 122 0.5 2.0 1.2 2.3 146 chrX 17061570 intron CG45002 - chrX 17061643 intron CG45002 - chrX 17061716 intron CG45002 - chrX_5_17060001 chrX_17060001 RAL-852 944 chrX 17680898 17680907 chrX 17680975 17680984 5 77 2.0 0.5 1.2 2.3 86 chrX 17680898 intron chas - chrX 17680941 intron chas - chrX 17680984 intron chas - chrX_5_17680001 chrX_17680001 RAL-852 945 chrX 17965712 17965738 chrX 17965789 17965815 4 77 2.0 0.0 1.0 2.0 103 chrX 17965712 intron Sh - chrX 17965764 intron Sh - chrX 17965815 intron Sh - chrX_4_17965001 chrX_17965001 RAL-852 946 chrX 17968894 17968920 chrX 17969012 17969038 4 118 0.5 0.5 0.5 2.7 144 chrX 17968894 intron Sh - chrX 17968966 intron Sh - chrX 17969038 intron Sh - chrX_4_17965001 chrX_17965001 RAL-852 947 chrX 18429509 18429519 chrX 18434820 18434830 Transpac 5 5311 0.0 3.5 1.8 1.8 5321 chrX 18429509 intergenic not near genes chrX 18432170 intergenic not near genes chrX 18434830 intergenic not near genes chrX_5_18430001 chrX_18430001 RAL-852 948 chrX 18896909 18896931 chrX 18896986 18897008 5 77 1.5 2.0 1.8 1.8 99 chrX 18896909 intergenic CG7349 + chrX 18896958 intergenic CG7349 + chrX 18897008 intergenic CG7349 + chrX_5_18895001 chrX_18895001 RAL-852 949 chrX 18957078 18957103 chrX 18965741 18965766 roo 5 8663 0.0 1.5 0.8 2.8 8688 chrX 18957078 intron CG43759 + chrX 18961422 intron CG43759 + chrX 18965766 intron CG43759 + chrX_5_18960001 chrX_18960001 RAL-852 950 chrX 19125693 19125713 chrX 19125819 19125840 6 128 0.5 2.5 1.5 2.4 147 chrX 19125693 intron tgy - chrX 19125766 intron tgy - chrX 19125840 intron tgy - chrX_6_19125001 chrX_19125001 RAL-852 951 chrX 19136553 19136583 chrX 19143473 19143501 412 5 6919 0.0 0.5 0.2 4.2 6948 chrX 19136553 intergenic not near genes chrX 19140027 intergenic not near genes chrX 19143501 3` UTR RhoGAP18B - chrX_5_19140001 chrX_19140001 RAL-852 952 chrX 19176214 19176229 chrX 19176298 19176313 4 84 1.0 3.0 2.0 1.3 99 chrX 19176214 3` UTR CG7556 - chrX 19176264 3` UTR CG7556 - chrX 19176313 3` UTR CG7556 - chrX_4_19175001 chrX_19175001 RAL-852 953 chrX 13057298 13057300 chrX 19242813 19242814 14 6185514 6.5 3.5 5.0 2.3 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_14_16150001 chrX_16150001 RAL-852 954 chrX 19356990 19357016 chrX 19358431 19358457 NOF 8 1441 2.5 1.5 2.0 2.7 1467 chrX 19356990 intron kek5 + chrX 19357724 intron kek5 + chrX 19358457 intron kek5 + chrX_8_19355001 chrX_19355001 RAL-852 955 chrX 19380177 19380182 chrX 19380418 19380423 pogo 4 241 0.5 2.0 1.2 1.8 246 chrX 19380177 intron kek5 + chrX 19380300 intron kek5 + chrX 19380423 intron kek5 + chrX_4_19380001 chrX_19380001 RAL-852 956 chrX 19500564 19500736 chrX 19500639 19500823 12 82 0.0 1.5 0.8 6.7 259 chrX 19500564 intron,intron CG14200 +,Pfrx + chrX 19500694 intron,intron CG14200 +,Pfrx + chrX 19500823 intron,intron CG14200 +,Pfrx + chrX_12_19500001 chrX_19500001 RAL-852 957 chrX 19576559 19576591 chrX 19576635 19576669 6 78 1.0 1.5 1.2 2.7 110 chrX 19576559 intron Tao - chrX 19576614 intron Tao - chrX 19576669 intron Tao - chrX_6_19575001 chrX_19575001 RAL-852 958 chrX 19593959 19593974 chrX 19594044 19594059 5 85 2.0 4.0 3.0 1.2 100 chrX 19593959 exon CG14205 + chrX 19594009 intron CG14205 + chrX 19594059 intron CG14205 + chrX_5_19590001 chrX_19590001 RAL-852 959 chrX 19710074 19710103 chrX 19711860 19711885 S-element 8 1785 1.0 1.5 1.2 3.6 1811 chrX 19710074 intron meso18E - chrX 19710980 intron meso18E - chrX 19711885 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-852 960 chrX 19822834 19822862 chrX 19822998 19823029 9 167 1.5 1.5 1.5 3.6 195 chrX 19822834 intergenic not near genes chrX 19822932 intergenic skpE - chrX 19823029 intergenic skpE - chrX_9_19820001 chrX_19820001 RAL-852 961 chrX 19881453 19881482 chrX 19881534 19881562 4 80 0.5 1.0 0.8 2.2 109 chrX 19881453 intron Hers + chrX 19881508 intron Hers + chrX 19881562 intron Hers + chrX_4_19880001 chrX_19880001 RAL-852 962 chrX 19897392 19897415 chrX 19897468 19897492 5 77 2.5 1.5 2.0 1.7 100 chrX 19897392 intron Hers + chrX 19897442 intron Hers + chrX 19897492 intron Hers + chrX_5_19895001 chrX_19895001 RAL-852 963 chrX 20041532 20041556 chrX 20041612 20041636 5 80 1.5 1.5 1.5 2.0 104 chrX 20041532 intron Dop2R - chrX 20041584 intron Dop2R - chrX 20041636 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-852 964 chrX 20262884 20262908 chrX 20262993 20263017 5 106 1.0 1.5 1.2 2.3 133 chrX 20262884 intergenic not near genes chrX 20262950 intergenic not near genes chrX 20263017 intergenic not near genes chrX_5_20260001 chrX_20260001 RAL-852 965 chrX 20312883 20312900 chrX 20312961 20312978 4 78 1.0 0.5 0.8 2.2 95 chrX 20312883 intron CG1504 - chrX 20312930 intron CG1504 - chrX 20312978 intron CG1504 - chrX_4_20310001 chrX_20310001 RAL-852 966 chrX 20528615 20528622 chrX 20528963 20528970 5 348 1.0 2.0 1.5 2.0 355 chrX 20528615 intergenic not near genes chrX 20528792 intergenic not near genes chrX 20528970 intergenic not near genes chrX_5_20525001 chrX_20525001 RAL-852 967 chrX 20546553 20546566 chrX 20546719 20546732 4 166 0.0 1.0 0.5 2.7 179 chrX 20546553 intron RunxB + chrX 20546642 intron RunxB + chrX 20546732 intron RunxB + chrX_4_20545001 chrX_20545001 RAL-852 968 chrX 20578087 20578112 chrX 20578166 20578191 5 79 1.0 2.0 1.5 2.0 104 chrX 20578087 intergenic not near genes chrX 20578139 intergenic not near genes chrX 20578191 intergenic not near genes chrX_5_20575001 chrX_20575001 RAL-852 969 chrX 20836734 20836751 chrX 20844332 20844353 roo 6 7601 0.5 0.5 0.5 4.0 7619 chrX 20836734 intron shakB - chrX 20840544 intron shakB - chrX 20844353 intron shakB - chrX_6_20840001 chrX_20840001 RAL-852 970 chrX 20940717 20940746 chrX 20942186 20942215 hobo 4 1469 1.5 0.0 0.8 2.2 1498 chrX 20940717 intergenic not near genes chrX 20941466 intergenic not near genes chrX 20942215 intergenic not near genes chrX_4_20940001 chrX_20940001 RAL-852 971 chrX 21458694 21458719 chrX 21464130 21464155 Ivk 4 5436 0.0 0.5 0.2 3.3 5461 chrX 21458694 intergenic not near genes chrX 21461424 intergenic not near genes chrX 21464155 intergenic not near genes chrX_4_21460001 chrX_21460001 RAL-852 972 chrX 21474404 21474434 chrX 21474769 21474800 1731 6 366 1.5 1.0 1.2 2.7 396 chrX 21474404 intergenic not near genes chrX 21474602 intergenic not near genes chrX 21474800 intergenic not near genes chrX_6_21470001 chrX_21470001 RAL-852 973 chrX 21500562 21500589 chrX 21500763 21500790 4 200 0.0 3.0 1.5 1.6 228 chrX 21500562 intron CR45082 - chrX 21500676 intron CR45082 - chrX 21500790 intron CR45082 - chrX_4_21500001 chrX_21500001 RAL-852 974 chrX 21516994 21517015 chrX 21517073 21517094 5 79 2.0 3.5 2.8 1.3 100 chrX 21516994 intron CR45082 - chrX 21517044 intron CR45082 - chrX 21517094 intron CR45082 - chrX_5_21515001 chrX_21515001 RAL-852 975 chrX 21668256 21668290 chrX 21668340 21668375 4 84 0.5 1.0 0.8 2.2 119 chrX 21668256 intergenic not near genes chrX 21668316 intergenic not near genes chrX 21668375 intergenic not near genes chrX_4_21665001 chrX_21665001 RAL-852 976 chrX 22492490 22492515 chrX 22493001 22493028 6 512 0.5 2.0 1.2 2.7 538 chrX 22492490 intron l(1)G0196 + chrX 22492759 intron l(1)G0196 + chrX 22493028 intron l(1)G0196 + chrX_6_22490001 chrX_22490001 RAL-852 977 chrX 22677297 22677325 chrX 22677505 22677529 4 207 0.5 0.5 0.5 2.7 232 chrX 22677297 intron CR44997 + chrX 22677413 intron CR44997 + chrX 22677529 intron CR44997 + chrX_4_22675001 chrX_22675001 RAL-852 978 chrX 22697495 22697515 chrX 22701792 22701812 Juan 7 4297 1.0 2.5 1.8 2.5 4317 chrX 22697495 intron CR44997 + chrX 22699654 intron CR44997 + chrX 22701812 intron CR44997 + chrX_7_22695001 chrX_22695001 RAL-852 979 chrX 22771511 22771537 chrX 22774801 22774828 297 4 3290 1.0 1.0 1.0 2.0 3317 chrX 22771511 intron CR44997 + chrX 22773170 intron CR44997 + chrX 22774828 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-852 980 chrX 22922516 22922550 chrX 22922596 22922627 4 79 1.5 2.0 1.8 1.4 111 chrX 22922516 intergenic not near genes chrX 22922572 intergenic not near genes chrX 22922627 intergenic not near genes chrX_4_22920001 chrX_22920001 RAL-852 981 chrX 22967391 22967407 chrX 23154542 23154558 diver 4 187151 0.5 3.0 1.8 1.4 187167 chrX 22967391 intergenic not near genes chrX 23060974 intergenic not near genes chrX 23154558 intergenic not near genes chrX_4_23060001 chrX_23060001 RAL-852 982 chrX 22992395 22992427 chrX 22992526 22992558 4 131 0.0 1.5 0.8 2.2 163 chrX 22992395 intron,intron stnA -,stnB - chrX 22992476 intron,intron stnA -,stnB - chrX 22992558 intron,intron stnA -,stnB - chrX_4_22990001 chrX_22990001 RAL-852 983 chrY 975598 975818 chrY 975715 975898 5 87 56.5 40.5 48.5 0.1 300 chrY 975598 intergenic not near genes chrY 975748 intergenic not near genes chrY 975898 intergenic not near genes chrY_5_975001 chrY_975001 RAL-852