SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
2	chr2L	47425	47484	chr2L	52580	52582	jockey	23	5152	8.5	17.5	13.0	1.6	5157	chr2L	47425	intron	Cda5 -	chr2L	50004	intron	Cda5 -	chr2L	52582	intron	Cda5 -	chr2L_23_50001	chr2L_50001	RAL-850
11	chr2L	347847	347896	chr2L	355397	355446	blood	24	7550	8.0	4.5	6.2	3.3	7599	chr2L	347847	3` UTR	Plc21C +	chr2L	351646	intron	Plc21C +	chr2L	355446	3` UTR	Plc21C +	chr2L_24_350001	chr2L_350001	RAL-850
18	chr2L	686920	686925	chr2L	696010	696015	roo	4	9090	8.5	8.0	8.2	0.4	9095	chr2L	686920	intron	ds -	chr2L	691468	intron	ds -	chr2L	696015	intron	ds -	chr2L_4_690001	chr2L_690001	RAL-850
19	chr2L	686926	686941	chr2L	695976	696031	roo	7	9084	6.5	5.5	6.0	1.0	9105	chr2L	686926	intron	ds -	chr2L	691478	intron	ds -	chr2L	696031	intron	ds -	chr2L_7_690001	chr2L_690001	RAL-850
22	chr2L	770429	770450	chr2L	772260	772276	Bari1	10	1830	20.5	13.0	16.8	0.6	1847	chr2L	770429	intergenic	not near genes	chr2L	771352	intergenic	not near genes	chr2L	772276	intergenic	CR44614 +	chr2L_10_770001	chr2L_770001	RAL-850
23	chr2L	770453	770481	chr2L	772251	772306	Bari1	14	1818	14.0	12.0	13.0	1.0	1853	chr2L	770453	intergenic	not near genes	chr2L	771380	intergenic	not near genes	chr2L	772306	intergenic	CR44614 +	chr2L_14_770001	chr2L_770001	RAL-850
27	chr2L	976831	976910	chr2L	984517	984596	roo	22	7686	8.5	7.5	8.0	2.4	7765	chr2L	976831	intergenic	not near genes	chr2L	980714	intergenic	not near genes	chr2L	984596	intergenic	not near genes	chr2L_22_980001	chr2L_980001	RAL-850
28	chr2L	996676	996721	chr2L	1005821	1005866	roo	13	9144	7.5	5.5	6.5	1.7	9190	chr2L	996676	intergenic	not near genes	chr2L	1001271	intergenic	not near genes	chr2L	1005866	intergenic	not near genes	chr2L_13_1000001	chr2L_1000001	RAL-850
37	chr2L	1220087	1220157	chr2L	1227603	1227673	blood	25	7516	12.0	9.5	10.8	2.1	7586	chr2L	1220087	intron	CG42329 +	chr2L	1223880	intron	CG42329 +	chr2L	1227673	intron	CG42329 +	chr2L_25_1220001	chr2L_1220001	RAL-850
41	chr2L	1301749	1301753	chr2L	1302336	1302340	gypsy	4	587	0.0	16.5	8.2	0.4	591	chr2L	1301749	intergenic	not near genes	chr2L	1302044	intergenic	not near genes	chr2L	1302340	intergenic	not near genes	chr2L_4_1300001	chr2L_1300001	RAL-850
47	chr2L	1570662	1570711	chr2L	1573570	1573633	F-element	23	2921	11.0	10.0	10.5	2.0	2971	chr2L	1570662	intron	haf +	chr2L	1572148	intron	haf +	chr2L	1573633	intron	haf +	chr2L_23_1570001	chr2L_1570001	RAL-850
53	chr2L	1678932	1678950	chr2L	1686447	1686464	blood	5	7515	22.5	8.0	15.2	0.3	7532	chr2L	1678932	intron	chinmo +	chr2L	1682698	intron	chinmo +	chr2L	1686464	intron	chinmo +	chr2L_5_1680001	chr2L_1680001	RAL-850
54	chr2L	1678953	1678998	chr2L	1686443	1686513	blood	25	7512	6.5	7.0	6.8	3.2	7560	chr2L	1678953	intron	chinmo +	chr2L	1682733	intron	chinmo +	chr2L	1686513	intron	chinmo +	chr2L_25_1680001	chr2L_1680001	RAL-850
55	chr2L	1711311	1711336	chr2L	1711685	1711710	mdg3	11	372	17.5	14.5	16.0	0.6	399	chr2L	1711311	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711510	3` UTR	frtz -	chr2L	1711710	3` UTR	frtz -	chr2L_11_1710001	chr2L_1710001	RAL-850
56	chr2L	1711342	1711380	chr2L	1711683	1711754	mdg3	18	362	8.5	14.0	11.2	1.5	412	chr2L	1711342	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711548	3` UTR	frtz -	chr2L	1711754	exon	frtz -	chr2L_18_1710001	chr2L_1710001	RAL-850
64	chr2L	2100388	2100403	chr2L	2109550	2109550	roo	7	9166	12.0	10.0	11.0	0.6	9162	chr2L	2100388	intron	dpr3 -	chr2L	2104969	intron	dpr3 -	chr2L	2109550	intron	dpr3 -	chr2L_7_2100001	chr2L_2100001	RAL-850
65	chr2L	2112071	2112140	chr2L	2119777	2119838	opus	15	7702	6.0	11.5	8.8	1.5	7767	chr2L	2112071	intergenic	not near genes	chr2L	2115954	intergenic	not near genes	chr2L	2119838	intergenic	not near genes	chr2L_15_2115001	chr2L_2115001	RAL-850
69	chr2L	2294024	2294070	chr2L	2299245	2299304	copia	18	5242	8.5	12.0	10.2	1.6	5280	chr2L	2294024	intergenic	not near genes	chr2L	2296664	intergenic	not near genes	chr2L	2299304	intergenic	not near genes	chr2L_18_2295001	chr2L_2295001	RAL-850
80	chr2L	2565495	2565563	chr2L	2571613	2571681	297	12	6118	7.5	7.0	7.2	1.5	6186	chr2L	2565495	exon	Cyp309a2 -	chr2L	2568588	intron	Cyp309a2 -	chr2L	2571681	exon	Cyp309a2 -	chr2L_12_2565001	chr2L_2565001	RAL-850
83	chr2L	2661158	2661172	chr2L	2663046	2663049	I-element	4	1884	22.5	8.5	15.5	0.2	1891	chr2L	2661158	intergenic	not near genes	chr2L	2662104	intergenic	not near genes	chr2L	2663049	intergenic	not near genes	chr2L_4_2660001	chr2L_2660001	RAL-850
84	chr2L	2661178	2661227	chr2L	2663031	2663085	I-element	21	1861	9.0	4.5	6.8	2.7	1907	chr2L	2661178	intergenic	not near genes	chr2L	2662132	intergenic	not near genes	chr2L	2663085	intergenic	not near genes	chr2L_21_2660001	chr2L_2660001	RAL-850
90	chr2L	2772578	2772617	chr2L	2779212	2779251	297	9	6634	11.5	17.0	14.2	0.6	6673	chr2L	2772578	3` UTR	Syt1 -	chr2L	2775914	intron	Syt1 -	chr2L	2779251	3` UTR	Syt1 -	chr2L_9_2775001	chr2L_2775001	RAL-850
101	chr2L	2933263	2933325	chr2L	2935490	2935544	pogo	30	2223	7.0	11.5	9.2	2.9	2281	chr2L	2933263	intron	lilli +	chr2L	2934404	intron	lilli +	chr2L	2935544	intron	lilli +	chr2L_30_2930001	chr2L_2930001	RAL-850
103	chr2L	3072989	3073054	chr2L	3078242	3078304	copia	27	5253	7.0	10.5	8.8	2.8	5315	chr2L	3072989	intron	toc -	chr2L	3075646	intron	toc -	chr2L	3078304	intron	toc -	chr2L_27_3075001	chr2L_3075001	RAL-850
107	chr2L	3202693	3202741	chr2L	3210170	3210220	mdg1	17	7479	10.5	0.0	5.2	2.7	7527	chr2L	3202693	intergenic	not near genes	chr2L	3206456	intergenic	not near genes	chr2L	3210220	intergenic	CR45336 +	chr2L_17_3205001	chr2L_3205001	RAL-850
108	chr2L	3251464	3251515	chr2L	3259079	3259130	springer	20	7614	7.0	6.0	6.5	2.7	7666	chr2L	3251464	intergenic	not near genes	chr2L	3255297	intergenic	not near genes	chr2L	3259130	intergenic	not near genes	chr2L_20_3255001	chr2L_3255001	RAL-850
114	chr2L	3388552	3388628	chr2L	3388843	3388919	pogo	24	291	6.0	8.5	7.2	2.9	367	chr2L	3388552	intergenic	CG42460 -	chr2L	3388736	intergenic	CG42460 -	chr2L	3388919	intergenic	CG42460 -,CR44791 +	chr2L_24_3385001	chr2L_3385001	RAL-850
123	chr2L	3649754	3649760	chr2L	3655006	3655012	copia	4	5252	0.0	11.5	5.8	0.6	5258	chr2L	3649754	intron	for -	chr2L	3652383	intron	for -	chr2L	3655012	intron	for -	chr2L_4_3650001	chr2L_3650001	RAL-850
124	chr2L	3649763	3649807	chr2L	3655005	3655059	copia	16	5250	0.0	11.5	5.8	2.4	5296	chr2L	3649763	intron	for -	chr2L	3652411	intron	for -	chr2L	3655059	intron	for -	chr2L_16_3650001	chr2L_3650001	RAL-850
140	chr2L	4066012	4066051	chr2L	4068873	4068926	Juan	18	2872	9.5	11.0	10.2	1.6	2914	chr2L	4066012	intron	ed +	chr2L	4067469	intron	ed +	chr2L	4068926	intron	ed +	chr2L_18_4065001	chr2L_4065001	RAL-850
150	chr2L	4601664	4601726	chr2L	4609155	4609217	mdg1	33	7490	11.0	10.0	10.5	2.9	7553	chr2L	4601664	intron	dp -	chr2L	4605440	intron	dp -	chr2L	4609217	intron	dp -	chr2L_33_4605001	chr2L_4605001	RAL-850
153	chr2L	4661795	4661851	chr2L	4669425	4669466	opus	13	7627	5.5	14.5	10.0	1.2	7671	chr2L	4661795	intergenic	not near genes	chr2L	4665630	intergenic	not near genes	chr2L	4669466	intergenic	not near genes	chr2L_13_4665001	chr2L_4665001	RAL-850
161	chr2L	4918128	4918200	chr2L	4923251	4923361	jockey	28	5155	2.5	0.0	1.2	12.7	5233	chr2L	4918128	intron	hoe1 -	chr2L	4920744	intron	hoe1 -	chr2L	4923361	intron	hoe1 -	chr2L_28_4920001	chr2L_4920001	RAL-850
163	chr2L	4953464	4953490	chr2L	4953755	4953771	pogo	8	290	18.0	2.0	10.0	0.7	307	chr2L	4953464	intergenic	Jon25Bii -	chr2L	4953618	intergenic	Jon25Bii -	chr2L	4953771	intergenic	not near genes	chr2L_8_4950001	chr2L_4950001	RAL-850
171	chr2L	5342730	5342792	chr2L	5345160	5345222	Doc	22	2430	8.5	5.0	6.8	2.8	2492	chr2L	5342730	intergenic	CG12512 -	chr2L	5343976	intergenic	not near genes	chr2L	5345222	intergenic	not near genes	chr2L_22_5340001	chr2L_5340001	RAL-850
185	chr2L	5827685	5827735	chr2L	5836727	5836793	roo	17	9057	9.0	6.5	7.8	1.9	9108	chr2L	5827685	intron	TrissinR +	chr2L	5832239	intron	TrissinR +	chr2L	5836793	intron	TrissinR +	chr2L_17_5830001	chr2L_5830001	RAL-850
204	chr2L	6363106	6363119	chr2L	6366082	6366095	Burdock	8	2975	23.0	5.5	14.2	0.5	2989	chr2L	6363106	intergenic	not near genes	chr2L	6364600	intergenic	not near genes	chr2L	6366095	intergenic	not near genes	chr2L_8_6360001	chr2L_6360001	RAL-850
205	chr2L	6363124	6363180	chr2L	6366079	6366151	Burdock	31	2971	8.0	3.5	5.8	4.6	3027	chr2L	6363124	intergenic	not near genes	chr2L	6364638	intergenic	not near genes	chr2L	6366151	intergenic	not near genes	chr2L_31_6360001	chr2L_6360001	RAL-850
207	chr2L	6426817	6426883	chr2L	6445127	6445161	roo	35	18308	7.5	9.5	8.5	3.7	18344	chr2L	6426817	3` UTR	CG9527 -	chr2L	6435989	intron	CG9527 -	chr2L	6445161	exon	CG9527 -	chr2L_35_6435001	chr2L_6435001	RAL-850
222	chr2L	6876759	6876771	chr2L	6882979	6883011	diver	7	6231	22.0	8.5	15.2	0.4	6252	chr2L	6876759	intron	Nlg2 +	chr2L	6879885	intron	Nlg2 +	chr2L	6883011	intron	Nlg2 +	chr2L_7_6875001	chr2L_6875001	RAL-850
223	chr2L	6876772	6876809	chr2L	6882968	6882998	diver	15	6221	14.5	5.0	9.8	1.4	6226	chr2L	6876772	intron	Nlg2 +	chr2L	6879885	intron	Nlg2 +	chr2L	6882998	intron	Nlg2 +	chr2L_15_6875001	chr2L_6875001	RAL-850
237	chr2L	7343296	7343347	chr2L	7350447	7350482	roo	22	7158	6.0	8.0	7.0	2.8	7186	chr2L	7343296	intron	Wnt6 +	chr2L	7346889	intron	Wnt6 +	chr2L	7350482	intron	Wnt6 +	chr2L_22_7345001	chr2L_7345001	RAL-850
248	chr2L	7579162	7579231	chr2L	7579403	7579460	BS	15	235	4.5	0.5	2.5	4.3	298	chr2L	7579162	intergenic	RapGAP1 -	chr2L	7579311	intergenic	RapGAP1 -	chr2L	7579460	intergenic	RapGAP1 -	chr2L_15_7575001	chr2L_7575001	RAL-850
263	chr2L	7958994	7959058	chr2L	7960455	7960512	pogo	24	1460	5.0	7.5	6.2	3.3	1518	chr2L	7958994	intron	Snoo -	chr2L	7959753	intron	Snoo -	chr2L	7960512	intron	Snoo -	chr2L_24_7955001	chr2L_7955001	RAL-850
267	chr2L	7977043	7977112	chr2L	7984068	7984101	297	10	7017	5.0	6.5	5.8	1.5	7058	chr2L	7977043	intron	Snoo -	chr2L	7980572	intron	Snoo -	chr2L	7984101	intron,5` UTR	Snoo -,CG7231 +	chr2L_10_7980001	chr2L_7980001	RAL-850
269	chr2L	8013570	8013581	chr2L	8018825	8018836	copia	7	5255	16.0	0.0	8.0	0.8	5266	chr2L	8013570	intron	Tg +	chr2L	8016203	intron	Tg +	chr2L	8018836	intron	Tg +	chr2L_7_8015001	chr2L_8015001	RAL-850
270	chr2L	8013595	8013643	chr2L	8023581	8023629	copia	18	9986	6.0	6.5	6.2	2.5	10034	chr2L	8013595	intron	Tg +	chr2L	8018612	intron	Tg +	chr2L	8023629	intron	Tg +	chr2L_18_8015001	chr2L_8015001	RAL-850
283	chr2L	8452381	8452441	chr2L	8461602	8461644	roo	24	9220	19.0	16.0	17.5	1.3	9263	chr2L	8452381	intron	fu12 -	chr2L	8457012	intron	fu12 -	chr2L	8461644	intron	fu12 -	chr2L_24_8455001	chr2L_8455001	RAL-850
288	chr2L	8594426	8594487	chr2L	8601530	8601591	297	13	7104	8.0	7.5	7.8	1.5	7165	chr2L	8594426	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598008	intron	Sema-1a +	chr2L	8601591	intron	Sema-1a +	chr2L_13_8595001	chr2L_8595001	RAL-850
290	chr2L	8723076	8723138	chr2L	8731496	8731565	Tirant	33	8424	9.5	10.0	9.8	3.1	8489	chr2L	8723076	intron	raw -	chr2L	8727320	intron	raw -	chr2L	8731565	intron	raw -	chr2L_33_8725001	chr2L_8725001	RAL-850
302	chr2L	9000238	9000309	chr2L	9007798	9007801	roo	35	7556	10.0	12.0	11.0	2.9	7563	chr2L	9000238	intergenic	Try29F +	chr2L	9004020	intergenic	not near genes	chr2L	9007801	intergenic	not near genes	chr2L_35_9000001	chr2L_9000001	RAL-850
309	chr2L	9217928	9217992	chr2L	9222765	9222829	Doc	31	4836	7.5	9.5	8.5	3.3	4901	chr2L	9217928	intron	tai +	chr2L	9220378	intron	tai +	chr2L	9222829	intron	tai +	chr2L_31_9220001	chr2L_9220001	RAL-850
323	chr2L	9393450	9393517	chr2L	9396467	9396523	jockey	27	3015	6.0	10.5	8.2	2.9	3073	chr2L	9393450	intron	Shawl -	chr2L	9394986	intron	Shawl -	chr2L	9396523	intron	Shawl -	chr2L_27_9390001	chr2L_9390001	RAL-850
336	chr2L	9973692	9973759	chr2L	9980861	9980880	HMS-Beagle	34	7166	10.0	16.0	13.0	2.4	7188	chr2L	9973692	intergenic	not near genes	chr2L	9977286	intergenic	not near genes	chr2L	9980880	intergenic	not near genes	chr2L_34_9975001	chr2L_9975001	RAL-850
344	chr2L	10138141	10138186	chr2L	10143435	10143480	Rt1c	16	5291	10.5	15.5	13.0	1.1	5339	chr2L	10138141	intron	CG44153 -	chr2L	10140810	intron	CG44153 -	chr2L	10143480	intron	CG44153 -	chr2L_16_10140001	chr2L_10140001	RAL-850
346	chr2L	10156278	10156346	chr2L	10163798	10163866	blood	26	7517	7.5	7.5	7.5	3.1	7588	chr2L	10156278	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160072	intron	CG44153 -	chr2L	10163866	intron	CG44153 -	chr2L_26_10160001	chr2L_10160001	RAL-850
365	chr2L	10592808	10592831	chr2L	10600520	10600543	opus	5	7712	8.5	9.0	8.8	0.5	7735	chr2L	10592808	intron	Trim9 +	chr2L	10596676	intron	Trim9 +	chr2L	10600543	intron	Trim9 +	chr2L_5_10595001	chr2L_10595001	RAL-850
366	chr2L	10592833	10592869	chr2L	10600505	10600581	opus	18	7710	6.0	7.0	6.5	2.4	7748	chr2L	10592833	intron	Trim9 +	chr2L	10596707	intron	Trim9 +	chr2L	10600581	intron	Trim9 +	chr2L_18_10595001	chr2L_10595001	RAL-850
382	chr2L	10862807	10862858	chr2L	10864464	10864521	Rt1c	16	1653	16.5	12.5	14.5	1.0	1714	chr2L	10862807	3` UTR	CR43807 -	chr2L	10863664	intron	CR43807 -	chr2L	10864521	3` UTR	CR43807 -	chr2L_16_10860001	chr2L_10860001	RAL-850
383	chr2L	10862859	10862867	chr2L	10864452	10864531	Rt1c	7	1644	15.0	10.0	12.5	0.5	1672	chr2L	10862859	3` UTR	CR43807 -	chr2L	10863695	intron	CR43807 -	chr2L	10864531	3` UTR	CR43807 -	chr2L_7_10860001	chr2L_10860001	RAL-850
384	chr2L	10876534	10876568	chr2L	10883640	10883674	297	5	7106	7.5	13.0	10.2	0.4	7140	chr2L	10876534	intergenic	not near genes	chr2L	10880104	intergenic	not near genes	chr2L	10883674	intergenic	not near genes	chr2L_5_10880001	chr2L_10880001	RAL-850
387	chr2L	10946920	10946972	chr2L	10956175	10956180	roo	21	9259	13.5	13.0	13.2	1.5	9260	chr2L	10946920	intron	dpr2 -	chr2L	10951550	intron	dpr2 -	chr2L	10956180	intron	dpr2 -	chr2L_21_10950001	chr2L_10950001	RAL-850
395	chr2L	11315218	11315271	chr2L	11317672	11317714	G2	21	2450	6.0	6.0	6.0	3.0	2496	chr2L	11315218	intergenic	not near genes	chr2L	11316466	intergenic	not near genes	chr2L	11317714	intergenic	not near genes	chr2L_21_11315001	chr2L_11315001	RAL-850
403	chr2L	11540543	11540606	chr2L	11547995	11548058	Tabor	13	7452	10.0	6.5	8.2	1.4	7515	chr2L	11540543	intergenic	not near genes	chr2L	11544300	intergenic	not near genes	chr2L	11548058	intergenic	not near genes	chr2L_13_11540001	chr2L_11540001	RAL-850
404	chr2L	11563595	11563658	chr2L	11568849	11568912	copia	18	5252	7.5	9.0	8.2	2.0	5317	chr2L	11563595	intergenic	not near genes	chr2L	11566254	intergenic	not near genes	chr2L	11568912	intergenic	not near genes	chr2L_18_11565001	chr2L_11565001	RAL-850
405	chr2L	11614011	11614034	chr2L	11615556	11615558	hopper2	4	1540	18.0	9.0	13.5	0.3	1547	chr2L	11614011	intron	kek2 +	chr2L	11614784	intron	kek2 +	chr2L	11615558	intron	kek2 +	chr2L_4_11610001	chr2L_11610001	RAL-850
406	chr2L	11614043	11614085	chr2L	11615545	11615565	hopper2	25	1520	6.5	6.5	6.5	3.3	1522	chr2L	11614043	intron	kek2 +	chr2L	11614804	intron	kek2 +	chr2L	11615565	intron	kek2 +	chr2L_25_11610001	chr2L_11610001	RAL-850
410	chr2L	11713464	11713539	chr2L	11720982	11721031	blood	32	7511	7.0	10.0	8.5	3.4	7567	chr2L	11713464	intergenic	not near genes	chr2L	11717248	intergenic	not near genes	chr2L	11721031	intergenic	CR44143 +	chr2L_32_11715001	chr2L_11715001	RAL-850
416	chr2L	12067287	12067339	chr2L	12074389	12074441	297	18	7102	12.0	7.5	9.8	1.7	7154	chr2L	12067287	intergenic	not near genes	chr2L	12070864	intergenic	not near genes	chr2L	12074441	intergenic	not near genes	chr2L_18_12070001	chr2L_12070001	RAL-850
435	chr2L	12558277	12558343	chr2L	12565456	12565522	HMS-Beagle	27	7177	7.5	8.5	8.0	3.0	7245	chr2L	12558277	intergenic	not near genes	chr2L	12561900	intergenic	not near genes	chr2L	12565522	intergenic	not near genes	chr2L_27_12560001	chr2L_12560001	RAL-850
443	chr2L	12731018	12731081	chr2L	12735835	12735897	F-element	20	4817	4.0	8.0	6.0	2.9	4879	chr2L	12731018	intron	MRP +	chr2L	12733458	intron	MRP +	chr2L	12735897	intron	MRP +	chr2L_20_12730001	chr2L_12730001	RAL-850
444	chr2L	12739132	12739138	chr2L	12743963	12743969	Doc	6	4831	18.0	12.5	15.2	0.4	4837	chr2L	12739132	exon	MRP +	chr2L	12741550	intron	MRP +	chr2L	12743969	intron	MRP +	chr2L_6_12740001	chr2L_12740001	RAL-850
445	chr2L	12739144	12739195	chr2L	12743959	12744026	Doc	22	4830	6.5	12.0	9.2	2.2	4882	chr2L	12739144	exon	MRP +	chr2L	12741585	intron	MRP +	chr2L	12744026	exon	MRP +	chr2L_22_12740001	chr2L_12740001	RAL-850
447	chr2L	12763781	12763869	chr2L	12764043	12764131	BS	11	261	0.0	0.0	0.0	11.0	350	chr2L	12763781	intergenic	not near genes	chr2L	12763956	intergenic	not near genes	chr2L	12764131	intergenic	not near genes	chr2L_11_12760001	chr2L_12760001	RAL-850
448	chr2L	12781761	12781811	chr2L	12789261	12789311	Quasimodo	11	7500	14.5	7.0	10.8	0.9	7550	chr2L	12781761	intergenic	not near genes	chr2L	12785536	intergenic	not near genes	chr2L	12789311	intergenic	not near genes	chr2L_11_12785001	chr2L_12785001	RAL-850
449	chr2L	12791569	12791579	chr2L	12795294	12795304	F-element	5	3725	15.5	14.5	15.0	0.3	3735	chr2L	12791569	intergenic	not near genes	chr2L	12793436	intergenic	not near genes	chr2L	12795304	intergenic	not near genes	chr2L_5_12790001	chr2L_12790001	RAL-850
450	chr2L	12791585	12791625	chr2L	12795279	12795350	F-element	19	3718	6.5	10.5	8.5	2.0	3765	chr2L	12791585	intergenic	not near genes	chr2L	12793468	intergenic	not near genes	chr2L	12795350	intergenic	not near genes	chr2L_19_12790001	chr2L_12790001	RAL-850
453	chr2L	12861657	12861726	chr2L	12863174	12863236	hobo	30	1513	9.5	14.5	12.0	2.3	1579	chr2L	12861657	intergenic	not near genes	chr2L	12862446	intergenic	not near genes	chr2L	12863236	intergenic	not near genes	chr2L_30_12860001	chr2L_12860001	RAL-850
454	chr2L	12893999	12894024	chr2L	12895504	12895541	hobo	10	1512	12.5	14.0	13.2	0.7	1542	chr2L	12893999	intergenic	not near genes	chr2L	12894770	intergenic	not near genes	chr2L	12895541	intergenic	not near genes	chr2L_10_12890001	chr2L_12890001	RAL-850
455	chr2L	12894031	12894048	chr2L	12895488	12895507	hobo	9	1488	8.0	10.5	9.2	0.9	1476	chr2L	12894031	intergenic	not near genes	chr2L	12894769	intergenic	not near genes	chr2L	12895507	intergenic	not near genes	chr2L_9_12890001	chr2L_12890001	RAL-850
457	chr2L	12933807	12933818	chr2L	12941324	12941335	blood	9	7517	29.5	9.5	19.5	0.4	7528	chr2L	12933807	intergenic	not near genes	chr2L	12937571	intergenic	not near genes	chr2L	12941335	intergenic	not near genes	chr2L_9_12935001	chr2L_12935001	RAL-850
458	chr2L	12933819	12933881	chr2L	12941321	12941369	blood	34	7512	12.5	8.5	10.5	3.0	7550	chr2L	12933819	intergenic	not near genes	chr2L	12937594	intergenic	not near genes	chr2L	12941369	intergenic	not near genes	chr2L_34_12935001	chr2L_12935001	RAL-850
463	chr2L	13241915	13241925	chr2L	13244349	13244357	BS	7	2434	18.5	8.0	13.2	0.5	2442	chr2L	13241915	5` UTR	CR45330 +	chr2L	13243136	intron	CR45330 +	chr2L	13244357	5` UTR	CR45330 +	chr2L_7_13240001	chr2L_13240001	RAL-850
466	chr2L	13405621	13405669	chr2L	13410453	13410516	Doc	33	4845	9.0	15.0	12.0	2.5	4895	chr2L	13405621	exon	CG7110 +	chr2L	13408068	intron	CG7110 +	chr2L	13410516	exon	CG7110 +	chr2L_33_13405001	chr2L_13405001	RAL-850
472	chr2L	13449416	13449490	chr2L	13456902	13456976	Quasimodo	22	7486	7.5	11.5	9.5	2.1	7560	chr2L	13449416	intron,intron	CG42784 +,Hsp60D -	chr2L	13453196	intron	CG42784 +	chr2L	13456976	intron	CG42784 +	chr2L_22_13450001	chr2L_13450001	RAL-850
473	chr2L	13481414	13481447	chr2L	13482071	13482104	jockey	14	656	20.0	16.0	18.0	0.7	690	chr2L	13481414	intron	CG42784 +	chr2L	13481759	intron	CG42784 +	chr2L	13482104	intron	CG42784 +	chr2L_14_13480001	chr2L_13480001	RAL-850
474	chr2L	13481448	13481464	chr2L	13482068	13482121	jockey	10	652	16.0	15.0	15.5	0.6	673	chr2L	13481448	intron	CG42784 +	chr2L	13481784	intron	CG42784 +	chr2L	13482121	intron	CG42784 +	chr2L_10_13480001	chr2L_13480001	RAL-850
486	chr2L	13761770	13761822	chr2L	13762931	13762983	Doc	16	1159	12.5	11.5	12.0	1.2	1213	chr2L	13761770	intron	TM9SF4 +	chr2L	13762376	intron	TM9SF4 +	chr2L	13762983	intron	TM9SF4 +	chr2L_16_13760001	chr2L_13760001	RAL-850
488	chr2L	13853048	13853118	chr2L	13862248	13862328	roo	36	9202	8.5	0.5	4.5	6.5	9280	chr2L	13853048	intron	CenG1A +	chr2L	13857688	intron	CenG1A +	chr2L	13862328	intron	CenG1A +	chr2L_36_13855001	chr2L_13855001	RAL-850
514	chr2L	14618868	14618887	chr2L	14619299	14619318	jockey	10	431	8.0	6.5	7.2	1.2	450	chr2L	14618868	intron,3` UTR,3` UTR	osp -,Adh +,Adhr +	chr2L	14619093	intron	osp -	chr2L	14619318	intron	osp -	chr2L_10_14615001	chr2L_14615001	RAL-850
516	chr2L	14642531	14642592	chr2L	14651744	14651805	roo	22	9212	9.5	11.5	10.5	1.9	9274	chr2L	14642531	intron	osp -	chr2L	14647168	intron	osp -	chr2L	14651805	intron	osp -	chr2L_22_14645001	chr2L_14645001	RAL-850
523	chr2L	14803836	14803905	chr2L	14809084	14809158	copia	36	5252	8.0	8.5	8.2	3.9	5322	chr2L	14803836	intergenic	not near genes	chr2L	14806497	intergenic	not near genes	chr2L	14809158	intergenic	not near genes	chr2L_36_14805001	chr2L_14805001	RAL-850
527	chr2L	14889908	14889968	chr2L	14890383	14890443	jockey	29	475	10.0	5.0	7.5	3.4	535	chr2L	14889908	intergenic	not near genes	chr2L	14890176	intergenic	not near genes	chr2L	14890443	intergenic	not near genes	chr2L_29_14890001	chr2L_14890001	RAL-850
529	chr2L	14984348	14984401	chr2L	14991987	14992053	opus	12	7647	7.5	7.0	7.2	1.5	7705	chr2L	14984348	intron	mol -	chr2L	14988200	intron	mol -	chr2L	14992053	intron	mol -	chr2L_12_14985001	chr2L_14985001	RAL-850
544	chr2L	15446006	15446074	chr2L	15453525	15453593	blood	24	7517	9.5	1.5	5.5	3.7	7587	chr2L	15446006	intergenic	not near genes	chr2L	15449800	intergenic	not near genes	chr2L	15453593	intergenic	not near genes	chr2L_24_15445001	chr2L_15445001	RAL-850
550	chr2L	15586362	15586435	chr2L	15593464	15593535	297	16	7100	5.5	4.5	5.0	2.7	7173	chr2L	15586362	intergenic	not near genes	chr2L	15589948	intergenic	not near genes	chr2L	15593535	intergenic	not near genes	chr2L_16_15585001	chr2L_15585001	RAL-850
555	chr2L	15826847	15826893	chr2L	15829291	15829334	Tabor	12	2442	2.5	10.0	6.2	1.7	2487	chr2L	15826847	intergenic	not near genes	chr2L	15828090	intergenic	not near genes	chr2L	15829334	intergenic	not near genes	chr2L_12_15825001	chr2L_15825001	RAL-850
560	chr2L	15955981	15956045	chr2L	15957498	15957562	hobo	24	1516	8.5	12.0	10.2	2.1	1581	chr2L	15955981	intron	beat-Ib -	chr2L	15956772	intron	beat-Ib -	chr2L	15957562	intron	beat-Ib -	chr2L_24_15955001	chr2L_15955001	RAL-850
563	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	23	145889	33.5	33.5	33.5	0.7	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_23_16140001	chr2L_16140001	RAL-850
565	chr2L	16141140	16141186	chr2L	16146377	16146443	copia	18	5256	9.0	11.5	10.2	1.6	5303	chr2L	16141140	intergenic	not near genes	chr2L	16143792	intergenic	not near genes	chr2L	16146443	intergenic	not near genes	chr2L_18_16140001	chr2L_16140001	RAL-850
566	chr2L	16153692	16153749	chr2L	16160810	16160867	297	25	7117	7.5	8.0	7.8	2.8	7175	chr2L	16153692	intergenic	not near genes	chr2L	16157280	intergenic	not near genes	chr2L	16160867	intergenic	not near genes	chr2L_25_16155001	chr2L_16155001	RAL-850
568	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	25	145889	33.5	33.5	33.5	0.7	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_25_16140001	chr2L_16140001	RAL-850
569	chr2L	16280236	16280284	chr2L	16281437	16281465	1360	18	1212	7.5	13.0	10.2	1.6	1229	chr2L	16280236	intron	crp -	chr2L	16280850	intron	crp -	chr2L	16281465	intron	crp -	chr2L_18_16280001	chr2L_16280001	RAL-850
574	chr2L	16511935	16511994	chr2L	16519112	16519171	HMS-Beagle	23	7177	7.5	5.5	6.5	3.1	7236	chr2L	16511935	intron	CG5953 -	chr2L	16515553	intron	CG5953 -	chr2L	16519171	intron	CG5953 -	chr2L_23_16515001	chr2L_16515001	RAL-850
584	chr2L	16958066	16958126	chr2L	16962904	16962964	Doc	24	4838	7.5	10.0	8.8	2.4	4898	chr2L	16958066	intergenic	not near genes	chr2L	16960515	intergenic	not near genes	chr2L	16962964	intergenic	not near genes	chr2L_24_16960001	chr2L_16960001	RAL-850
597	chr2L	17167520	17167589	chr2L	17167811	17167880	pogo	24	291	11.5	11.0	11.2	2.0	360	chr2L	17167520	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167700	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167880	intron,intron	CG34106 +,beat-IIIa +	chr2L_24_17165001	chr2L_17165001	RAL-850
598	chr2L	17199120	17199179	chr2L	17200637	17200696	hobo	15	1516	10.0	3.0	6.5	2.0	1576	chr2L	17199120	intron	beat-IIIc -	chr2L	17199908	intron	beat-IIIc -	chr2L	17200696	intron	beat-IIIc -	chr2L_15_17195001	chr2L_17195001	RAL-850
602	chr2L	17273152	17273213	chr2L	17277985	17278046	F-element	26	4828	6.0	7.0	6.5	3.5	4894	chr2L	17273152	intergenic	not near genes	chr2L	17275599	intergenic	not near genes	chr2L	17278046	intergenic	not near genes	chr2L_26_17275001	chr2L_17275001	RAL-850
608	chr2L	17432026	17432046	chr2L	17432183	17432203	1360	9	157	0.0	14.0	7.0	1.1	177	chr2L	17432026	intron	Dif -	chr2L	17432114	intron	Dif -	chr2L	17432203	intron	Dif -	chr2L_9_17430001	chr2L_17430001	RAL-850
613	chr2L	17687467	17687520	chr2L	17692262	17692315	F-element	27	4794	6.0	8.5	7.2	3.3	4848	chr2L	17687467	intron	CadN -	chr2L	17689891	intron	CadN -	chr2L	17692315	intron	CadN -	chr2L_27_17685001	chr2L_17685001	RAL-850
615	chr2L	17727822	17727867	chr2L	17729339	17729384	hobo	18	1514	7.5	12.5	10.0	1.6	1562	chr2L	17727822	intron	CadN -	chr2L	17728603	intron	CadN -	chr2L	17729384	intron	CadN -	chr2L_18_17725001	chr2L_17725001	RAL-850
618	chr2L	17819882	17819944	chr2L	17825130	17825197	copia	25	5252	10.5	8.5	9.5	2.4	5315	chr2L	17819882	intron	CadN2 -	chr2L	17822540	intron	CadN2 -	chr2L	17825197	intron	CadN2 -	chr2L_25_17820001	chr2L_17820001	RAL-850
621	chr2L	17911919	17911983	chr2L	17914147	17914211	pogo	18	2227	9.5	9.5	9.5	1.7	2292	chr2L	17911919	intergenic	not near genes	chr2L	17913065	intergenic	not near genes	chr2L	17914211	intergenic	CG43271 -	chr2L_18_17910001	chr2L_17910001	RAL-850
623	chr2L	17951901	17951978	chr2L	17953411	17953472	hobo	23	1516	5.5	8.5	7.0	2.9	1571	chr2L	17951901	intergenic	CR44398 -,CR44397 -	chr2L	17952686	intergenic	not near genes	chr2L	17953472	intergenic	not near genes	chr2L_23_17950001	chr2L_17950001	RAL-850
625	chr2L	18051831	18051898	chr2L	18061028	18061083	roo	24	9191	9.5	9.0	9.2	2.4	9252	chr2L	18051831	intron	rdo +	chr2L	18056457	intron	rdo +	chr2L	18061083	intron	rdo +	chr2L_24_18055001	chr2L_18055001	RAL-850
634	chr2L	18407984	18408051	chr2L	18412818	18412893	Doc	10	4834	8.5	0.5	4.5	1.8	4909	chr2L	18407984	intergenic	not near genes	chr2L	18410438	intergenic	not near genes	chr2L	18412893	intergenic	not near genes	chr2L_10_18410001	chr2L_18410001	RAL-850
655	chr2L	19147258	19147281	chr2L	19154405	19154428	297	6	7146	10.0	6.0	8.0	0.7	7170	chr2L	19147258	intron	brat +	chr2L	19150843	intron	brat +	chr2L	19154428	intron	brat +	chr2L_6_19150001	chr2L_19150001	RAL-850
656	chr2L	19147285	19147392	chr2L	19154404	19154477	297	9	7109	0.0	5.5	2.8	2.4	7192	chr2L	19147285	intron	brat +	chr2L	19150881	intron	brat +	chr2L	19154477	intron	brat +	chr2L_9_19150001	chr2L_19150001	RAL-850
660	chr2L	19344968	19345035	chr2L	19357227	19357294	blood	14	12258	9.5	10.0	9.8	1.3	12326	chr2L	19344968	intron	dnt -	chr2L	19351131	intron	dnt -	chr2L	19357294	intron	dnt -	chr2L_14_19350001	chr2L_19350001	RAL-850
680	chr2L	19652525	19652592	chr2L	19674011	19674078	opus	32	21486	12.5	11.5	12.0	2.5	21553	chr2L	19652525	intron	Lar +	chr2L	19663302	intron	Lar +	chr2L	19674078	intron	Lar +	chr2L_32_19660001	chr2L_19660001	RAL-850
682	chr2L	19703497	19703561	chr2L	19712683	19712747	roo	38	9185	10.5	9.5	10.0	3.5	9250	chr2L	19703497	intron	Lar +	chr2L	19708122	intron	Lar +	chr2L	19712747	intron	Lar +	chr2L_38_19705001	chr2L_19705001	RAL-850
684	chr2L	19737308	19737383	chr2L	19740827	19740902	1360	28	3510	4.5	9.0	6.8	3.6	3594	chr2L	19737308	intergenic	Nf-YB +	chr2L	19739105	intergenic	not near genes	chr2L	19740902	intergenic	not near genes	chr2L_28_19735001	chr2L_19735001	RAL-850
685	chr2L	19762763	19762829	chr2L	19763055	19763121	pogo	18	291	11.0	10.5	10.8	1.5	358	chr2L	19762763	exon	fbp -	chr2L	19762942	intron	fbp -	chr2L	19763121	intron	fbp -	chr2L_18_19760001	chr2L_19760001	RAL-850
696	chr2L	20005831	20005893	chr2L	20010957	20011019	flea	26	5126	12.0	15.0	13.5	1.8	5188	chr2L	20005831	intron	CG43861 -	chr2L	20008425	intron	CG43861 -	chr2L	20011019	intron	CG43861 -	chr2L_26_20005001	chr2L_20005001	RAL-850
703	chr2L	20272074	20272100	chr2L	20282835	20282861	copia	11	10761	12.0	11.0	11.5	0.9	10787	chr2L	20272074	intergenic	not near genes	chr2L	20277468	intergenic	not near genes	chr2L	20282861	intergenic	not near genes	chr2L_11_20275001	chr2L_20275001	RAL-850
704	chr2L	20272101	20272136	chr2L	20282826	20282897	copia	18	10759	7.5	9.0	8.2	2.0	10796	chr2L	20272101	intergenic	not near genes	chr2L	20277499	intergenic	not near genes	chr2L	20282897	intergenic	not near genes	chr2L_18_20275001	chr2L_20275001	RAL-850
708	chr2L	20303159	20303184	chr2L	20310677	20310701	blood	6	7518	1.5	16.0	8.8	0.6	7542	chr2L	20303159	intergenic	not near genes	chr2L	20306930	intergenic	not near genes	chr2L	20310701	intergenic	not near genes	chr2L_6_20305001	chr2L_20305001	RAL-850
711	chr2L	20372190	20372197	chr2L	20372479	20372488	pogo	6	291	28.0	15.0	21.5	0.3	298	chr2L	20372190	intergenic	Ugt37a1 -	chr2L	20372339	intergenic	Ugt37a1 -	chr2L	20372488	exon	Ugt37a1 -	chr2L_6_20370001	chr2L_20370001	RAL-850
712	chr2L	20372198	20372248	chr2L	20372478	20372539	pogo	24	290	12.0	15.0	13.5	1.7	341	chr2L	20372198	intergenic	Ugt37a1 -	chr2L	20372368	intergenic	Ugt37a1 -	chr2L	20372539	exon	Ugt37a1 -	chr2L_24_20370001	chr2L_20370001	RAL-850
719	chr2L	20568611	20568684	chr2L	20569051	20569124	X-element	24	439	7.0	6.0	6.5	3.2	513	chr2L	20568611	intron	CR45347 +	chr2L	20568868	intron	CR45347 +	chr2L	20569124	intron	CR45347 +	chr2L_24_20565001	chr2L_20565001	RAL-850
720	chr2L	20576176	20576194	chr2L	20583694	20583712	blood	7	7518	16.0	6.5	11.2	0.6	7536	chr2L	20576176	intergenic	CR45347 +	chr2L	20579944	intergenic	not near genes	chr2L	20583712	3` UTR	CR44909 -	chr2L_7_20575001	chr2L_20575001	RAL-850
721	chr2L	20576196	20576246	chr2L	20583693	20583758	blood	26	7516	6.5	6.5	6.5	3.5	7562	chr2L	20576196	intergenic	CR45347 +	chr2L	20579977	intergenic	not near genes	chr2L	20583758	3` UTR	CR44909 -	chr2L_26_20575001	chr2L_20575001	RAL-850
732	chr2L	20835765	20835828	chr2L	20836532	20836595	Quasimodo	23	767	7.0	10.5	8.8	2.3	830	chr2L	20835765	5` UTR	Oseg5 -	chr2L	20836180	intergenic	Oseg5 -,Spn38F -	chr2L	20836595	intergenic	Spn38F -	chr2L_23_20835001	chr2L_20835001	RAL-850
736	chr2L	20891494	20891535	chr2L	20896645	20896657	jockey	16	5148	8.0	12.5	10.2	1.4	5163	chr2L	20891494	intron,intron	CG43739 -,sky -	chr2L	20894076	intron,intron	CG43739 -,sky -	chr2L	20896657	intron,intron	CG43739 -,sky -	chr2L_16_20890001	chr2L_20890001	RAL-850
737	chr2L	20891537	20891546	chr2L	20896635	20896697	jockey	5	5140	6.5	11.5	9.0	0.5	5160	chr2L	20891537	intron,intron	CG43739 -,sky -	chr2L	20894117	intron,intron	CG43739 -,sky -	chr2L	20896697	intron,intron	CG43739 -,sky -	chr2L_5_20890001	chr2L_20890001	RAL-850
741	chr2L	20976606	20976662	chr2L	20981471	20981527	X-element	20	4864	7.5	12.5	10.0	1.8	4921	chr2L	20976606	intron	CG42238 -	chr2L	20979066	intron	CG42238 -	chr2L	20981527	intron	CG42238 -	chr2L_20_20975001	chr2L_20975001	RAL-850
744	chr2L	21020237	21020301	chr2L	21023964	21024023	NOF	21	3723	4.0	10.5	7.2	2.6	3786	chr2L	21020237	intron	CG42238 -	chr2L	21022130	intron	CG42238 -	chr2L	21024023	intron	CG42238 -	chr2L_21_21020001	chr2L_21020001	RAL-850
745	chr2L	21041095	21041158	chr2L	21049406	21049469	Tirant	24	8308	10.5	13.5	12.0	1.8	8374	chr2L	21041095	intron	CG42238 -	chr2L	21045282	intron	CG42238 -	chr2L	21049469	intron	CG42238 -	chr2L_24_21045001	chr2L_21045001	RAL-850
750	chr2L	21347542	21347570	chr2L	21355054	21355092	blood	14	7521	9.0	5.0	7.0	1.8	7550	chr2L	21347542	intron	Tsp39D +	chr2L	21351317	intron	Tsp39D +	chr2L	21355092	intron	Tsp39D +	chr2L_14_21350001	chr2L_21350001	RAL-850
751	chr2L	21596990	21597030	chr2L	21604784	21604824	roo	7	7792	14.0	10.0	12.0	0.5	7834	chr2L	21596990	intergenic	not near genes	chr2L	21600907	intergenic	not near genes	chr2L	21604824	intergenic	not near genes	chr2L_7_21600001	chr2L_21600001	RAL-850
752	chr2L	21691792	21691813	chr2L	21698312	21698331	Burdock	6	6520	9.5	1.0	5.2	1.0	6539	chr2L	21691792	intron	CG31619 +	chr2L	21695062	intron	CG31619 +	chr2L	21698331	intron	CG31619 +	chr2L_6_21695001	chr2L_21695001	RAL-850
759	chr2L	21981639	21981711	chr2L	21990853	21990889	roo	26	9211	10.5	10.5	10.5	2.3	9250	chr2L	21981639	exon	CG2528 -	chr2L	21986264	intron	CG2528 -	chr2L	21990889	exon	CG2528 -	chr2L_26_21985001	chr2L_21985001	RAL-850
765	chr2L	22082206	22082210	chr2L	22082347	22082351	INE-1	6	141	3.5	14.5	9.0	0.6	145	chr2L	22082206	intergenic	not near genes	chr2L	22082278	intergenic	not near genes	chr2L	22082351	intergenic	not near genes	chr2L_6_22080001	chr2L_22080001	RAL-850
774	chr2L	22258572	22258635	chr2L	22260746	22260809	G6	24	2173	9.5	10.5	10.0	2.2	2237	chr2L	22258572	intergenic	Tif-IA +	chr2L	22259690	intergenic	not near genes	chr2L	22260809	intergenic	not near genes	chr2L_24_22255001	chr2L_22255001	RAL-850
776	chr2L	22548885	22548929	chr2L	22550132	22550204	1360	12	1257	0.0	8.5	4.2	2.3	1319	chr2L	22548885	intergenic	CG17490 +	chr2L	22549544	intergenic	not near genes	chr2L	22550204	intergenic	CG17493 +	chr2L_12_22545001	chr2L_22545001	RAL-850
777	chr2L	22581928	22581995	chr2L	22583767	22583834	S-element	21	1839	10.0	8.5	9.2	2.1	1906	chr2L	22581928	intron	CG17494 +	chr2L	22582881	intron	CG17494 +	chr2L	22583834	intron	CG17494 +	chr2L_21_22580001	chr2L_22580001	RAL-850
779	chr2L	22776381	22776449	chr2L	22778220	22778288	S-element	21	1839	3.5	4.5	4.0	4.2	1907	chr2L	22776381	intergenic	not near genes	chr2L	22777334	intergenic	not near genes	chr2L	22778288	intergenic	not near genes	chr2L_21_22775001	chr2L_22775001	RAL-850
780	chr2L	23174909	23174941	chr2L	23175889	23175921	INE-1	13	980	39.0	69.5	54.2	0.2	1012	chr2L	23174909	intergenic	CG12567 -	chr2L	23175415	intergenic	not near genes	chr2L	23175921	intergenic	not near genes	chr2L_13_23175001	chr2L_23175001	RAL-850
783	chr2R	529316	529338	chr2R	537991	538012	Max-element	8	8674	6.5	8.5	7.5	0.9	8696	chr2R	529316	intron	CG40378 +	chr2R	533664	intron	CG40378 +	chr2R	538012	intron	CG40378 +	chr2R_8_530001	chr2R_530001	RAL-850
784	chr2R	1082366	1082368	chr2R	1087192	1087194	Doc	5	4826	15.5	27.0	21.2	0.2	4828	chr2R	1082366	intron	rl +	chr2R	1084780	intron	rl +	chr2R	1087194	intron	rl +	chr2R_5_1080001	chr2R_1080001	RAL-850
786	chr2R	1516564	1516603	chr2R	1521342	1521381	1731	44	4777	66.5	50.0	58.2	0.7	4817	chr2R	1516564	exon	Maf1 -	chr2R	1518972	intron	Maf1 -	chr2R	1521381	5` UTR	Maf1 -	chr2R_44_1515001	chr2R_1515001	RAL-850
788	chr2R	2498947	2499002	chr2R	2508144	2508199	roo	19	9194	6.5	7.5	7.0	2.4	9252	chr2R	2498947	intron	MFS17 -	chr2R	2503573	intron	MFS17 -	chr2R	2508199	intron	MFS17 -	chr2R_19_2500001	chr2R_2500001	RAL-850
789	chr2R	1373053	1373070	chr2R	2589301	2589325	Cr1a	4	1216250	22.0	29.0	25.5	0.2	1216272	chr2R	1373053	intron	l(2)41Ab +	chr2R	1981189	intron	CG17684 -	chr2R	2589325	intergenic	not near genes	chr2R_4_1980001	chr2R_1980001	RAL-850
790	chr2R	2591485	2591507	chr2R	2594211	2594233	roo	7	2726	47.0	33.5	40.2	0.2	2748	chr2R	2591485	intergenic	not near genes	chr2R	2592859	intergenic	not near genes	chr2R	2594233	intergenic	not near genes	chr2R_7_2590001	chr2R_2590001	RAL-850
791	chr2R	3144044	3144108	chr2R	3393366	3393436	Doc	16	249327	25.0	37.5	31.2	0.5	249392	chr2R	3144044	intron	CG42596 +	chr2R	3268740	intergenic	not near genes	chr2R	3393436	intergenic	not near genes	chr2R_16_3265001	chr2R_3265001	RAL-850
793	chr2R	3532574	3532629	chr2R	3536067	3536122	Doc	7	3493	1.0	4.5	2.8	1.8	3548	chr2R	3532574	intergenic	not near genes	chr2R	3534348	intergenic	not near genes	chr2R	3536122	intergenic	not near genes	chr2R_7_3530001	chr2R_3530001	RAL-850
794	chr2R	4141910	4141918	chr2R	4150694	4150702	Dm88	4	8784	22.0	23.0	22.5	0.2	8792	chr2R	4141910	intergenic	not near genes	chr2R	4146306	intergenic	not near genes	chr2R	4150702	intergenic	not near genes	chr2R_4_4145001	chr2R_4145001	RAL-850
796	chr2R	4605678	4605688	chr2R	4605848	4605866	diver2	6	175	14.5	12.5	13.5	0.4	188	chr2R	4605678	intron	p120ctn +	chr2R	4605772	intron	p120ctn +	chr2R	4605866	intron	p120ctn +	chr2R_6_4605001	chr2R_4605001	RAL-850
797	chr2R	4622922	4622978	chr2R	4624125	4624187	1360	24	1207	6.0	11.5	8.8	2.4	1265	chr2R	4622922	intergenic	CR44101 -	chr2R	4623554	intergenic	not near genes	chr2R	4624187	intergenic	not near genes	chr2R_24_4620001	chr2R_4620001	RAL-850
799	chr2R	4750302	4750367	chr2R	4751509	4751530	1360	11	1201	3.5	8.0	5.8	1.6	1228	chr2R	4750302	intron	conu +	chr2R	4750916	intron	conu +	chr2R	4751530	intron	conu +	chr2R_11_4750001	chr2R_4750001	RAL-850
813	chr2R	5417950	5418016	chr2R	5420631	5420697	Burdock	23	2682	6.0	11.5	8.8	2.3	2747	chr2R	5417950	intron	laccase2 +	chr2R	5419324	intron	laccase2 +	chr2R	5420697	intron	laccase2 +	chr2R_23_5415001	chr2R_5415001	RAL-850
828	chr2R	5869234	5869299	chr2R	5874360	5874425	flea	30	5126	10.5	9.0	9.8	2.8	5191	chr2R	5869234	intergenic	not near genes	chr2R	5871830	intergenic	not near genes	chr2R	5874425	intergenic	not near genes	chr2R_30_5870001	chr2R_5870001	RAL-850
831	chr2R	5902113	5902184	chr2R	5909722	5909793	17.6	11	7609	6.0	9.0	7.5	1.3	7680	chr2R	5902113	5` UTR	CG43366 +	chr2R	5905953	intron	CG43366 +	chr2R	5909793	intron	CG43366 +	chr2R_11_5905001	chr2R_5905001	RAL-850
835	chr2R	5994414	5994453	chr2R	5994553	5994586	INE-1	17	139	10.0	8.0	9.0	1.7	172	chr2R	5994414	intron	Src42A +	chr2R	5994500	intron	Src42A +	chr2R	5994586	intron	Src42A +	chr2R_17_5990001	chr2R_5990001	RAL-850
839	chr2R	6096675	6096749	chr2R	6101923	6101947	BS	26	5232	12.5	13.5	13.0	1.9	5272	chr2R	6096675	intron	EcR -	chr2R	6099311	intron	EcR -	chr2R	6101947	intron	EcR -	chr2R_26_6095001	chr2R_6095001	RAL-850
848	chr2R	6494491	6494554	chr2R	6499303	6499329	F-element	14	4809	7.0	2.0	4.5	2.5	4838	chr2R	6494491	intergenic	not near genes	chr2R	6496910	intergenic	not near genes	chr2R	6499329	intergenic	not near genes	chr2R_14_6495001	chr2R_6495001	RAL-850
851	chr2R	6579735	6579778	chr2R	6584871	6584914	flea	17	5136	10.0	12.0	11.0	1.4	5179	chr2R	6579735	intron	jing +	chr2R	6582324	intron	jing +	chr2R	6584914	intron	jing +	chr2R_17_6580001	chr2R_6580001	RAL-850
852	chr2R	6579783	6579798	chr2R	6584862	6584934	flea	11	5130	4.5	9.0	6.8	1.4	5151	chr2R	6579783	intron	jing +	chr2R	6582358	intron	jing +	chr2R	6584934	intron	jing +	chr2R_11_6580001	chr2R_6580001	RAL-850
858	chr2R	6952125	6952141	chr2R	6959755	6959771	opus	6	7630	18.5	7.0	12.8	0.4	7646	chr2R	6952125	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955948	intron,intron	mim -,CheB42c -	chr2R	6959771	intron,intron	mim -,CheB42c -	chr2R_6_6955001	chr2R_6955001	RAL-850
859	chr2R	6952146	6952182	chr2R	6959750	6959812	opus	16	7628	10.0	6.5	8.2	1.7	7666	chr2R	6952146	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955979	intron,intron	mim -,CheB42c -	chr2R	6959812	intron,intron	mim -,CheB42c -	chr2R_16_6955001	chr2R_6955001	RAL-850
861	chr2R	7139858	7139946	chr2R	7141412	7141456	hopper2	7	1545	1.5	7.5	4.5	1.3	1598	chr2R	7139858	intergenic	not near genes	chr2R	7140657	intergenic	not near genes	chr2R	7141456	intergenic	not near genes	chr2R_7_7140001	chr2R_7140001	RAL-850
863	chr2R	7196531	7196587	chr2R	7201356	7201412	F-element	17	4825	8.0	7.0	7.5	2.0	4881	chr2R	7196531	intron	pk +	chr2R	7198972	intron	pk +	chr2R	7201412	intron	pk +	chr2R_17_7195001	chr2R_7195001	RAL-850
864	chr2R	7209845	7209867	chr2R	7217643	7217665	roo	17	7798	8.0	26.0	17.0	0.9	7820	chr2R	7209845	intron	pk +	chr2R	7213755	intron	pk +	chr2R	7217665	intron	pk +	chr2R_17_7210001	chr2R_7210001	RAL-850
865	chr2R	7235776	7235836	chr2R	7240918	7240942	jockey	22	5137	13.0	5.0	9.0	2.2	5166	chr2R	7235776	intergenic	not near genes	chr2R	7238359	intergenic	not near genes	chr2R	7240942	intergenic	not near genes	chr2R_22_7235001	chr2R_7235001	RAL-850
866	chr2R	7235840	7235847	chr2R	7240912	7240934	jockey	4	5094	10.0	4.5	7.2	0.5	5094	chr2R	7235840	intergenic	not near genes	chr2R	7238387	intergenic	not near genes	chr2R	7240934	intergenic	not near genes	chr2R_4_7235001	chr2R_7235001	RAL-850
875	chr2R	7434856	7434898	chr2R	7439207	7439249	Juan	18	4351	12.0	19.0	15.5	1.1	4393	chr2R	7434856	3` UTR	so +	chr2R	7437052	intergenic	not near genes	chr2R	7439249	intergenic	not near genes	chr2R_18_7435001	chr2R_7435001	RAL-850
876	chr2R	7608366	7608425	chr2R	7613619	7613676	I-element	28	5251	8.5	9.5	9.0	2.8	5310	chr2R	7608366	intron	CG1358 -	chr2R	7611021	intron	CG1358 -	chr2R	7613676	intron	CG1358 -	chr2R_28_7610001	chr2R_7610001	RAL-850
886	chr2R	7815632	7815691	chr2R	7822149	7822210	Burdock	20	6519	12.0	6.0	9.0	2.0	6578	chr2R	7815632	intergenic	CG1882 +	chr2R	7818921	intergenic	not near genes	chr2R	7822210	3` UTR	cathD -	chr2R_20_7815001	chr2R_7815001	RAL-850
887	chr2R	7869148	7869207	chr2R	7873984	7874043	Doc	22	4835	9.5	15.5	12.5	1.6	4895	chr2R	7869148	intron	Dgk -	chr2R	7871596	intron	Dgk -	chr2R	7874043	intron	Dgk -	chr2R_22_7870001	chr2R_7870001	RAL-850
897	chr2R	8160885	8160938	chr2R	8161025	8161068	1360	24	138	12.5	24.0	18.2	1.2	183	chr2R	8160885	exon	CG8708 -	chr2R	8160976	intron	CG8708 -	chr2R	8161068	intron	CG8708 -	chr2R_24_8160001	chr2R_8160001	RAL-850
905	chr2R	8330825	8330882	chr2R	8331361	8331418	roo	25	536	7.0	12.0	9.5	2.4	593	chr2R	8330825	intron	pdm3 +	chr2R	8331122	intron	pdm3 +	chr2R	8331418	intron	pdm3 +	chr2R_25_8330001	chr2R_8330001	RAL-850
906	chr2R	8398168	8398209	chr2R	8402999	8403011	Doc	14	4826	15.5	10.5	13.0	1.0	4843	chr2R	8398168	intron	CG2121 -	chr2R	8400590	intron	CG2121 -	chr2R	8403011	intron	CG2121 -	chr2R_14_8400001	chr2R_8400001	RAL-850
907	chr2R	8398213	8398235	chr2R	8402997	8403066	Doc	12	4825	10.0	10.0	10.0	1.1	4853	chr2R	8398213	intron	CG2121 -	chr2R	8400640	intron	CG2121 -	chr2R	8403066	intron	CG2121 -	chr2R_12_8400001	chr2R_8400001	RAL-850
908	chr2R	8416267	8416276	chr2R	8417141	8417150	I-element	4	874	16.0	11.5	13.8	0.3	883	chr2R	8416267	intergenic	not near genes	chr2R	8416708	intergenic	CG43296 -	chr2R	8417150	intergenic	CG43296 -	chr2R_4_8415001	chr2R_8415001	RAL-850
914	chr2R	8490562	8490571	chr2R	8492337	8492346	Rt1c	4	1775	22.0	15.0	18.5	0.2	1784	chr2R	8490562	intron	mtt -	chr2R	8491454	intron	mtt -	chr2R	8492346	intron	mtt -	chr2R_4_8490001	chr2R_8490001	RAL-850
915	chr2R	8566016	8566064	chr2R	8567012	8567060	1360	19	994	6.5	17.5	12.0	1.5	1044	chr2R	8566016	5` UTR	Cyp6a14 -	chr2R	8566538	5` UTR	Cyp6a14 -	chr2R	8567060	5` UTR	Cyp6a14 -	chr2R_19_8565001	chr2R_8565001	RAL-850
918	chr2R	8722719	8722732	chr2R	8723010	8723020	pogo	6	290	17.5	11.5	14.5	0.4	301	chr2R	8722719	intron	CG14767 -	chr2R	8722870	intron	CG14767 -	chr2R	8723020	intron	CG14767 -	chr2R_6_8720001	chr2R_8720001	RAL-850
919	chr2R	8722734	8722789	chr2R	8723008	8723049	pogo	39	280	5.5	11.0	8.2	4.2	315	chr2R	8722734	intron	CG14767 -	chr2R	8722892	intron	CG14767 -	chr2R	8723049	intron	CG14767 -	chr2R_39_8720001	chr2R_8720001	RAL-850
921	chr2R	8777874	8777945	chr2R	8784128	8784199	diver	20	6253	4.0	8.5	6.2	2.8	6325	chr2R	8777874	intergenic	not near genes	chr2R	8781036	intergenic	not near genes	chr2R	8784199	intergenic	not near genes	chr2R_20_8780001	chr2R_8780001	RAL-850
929	chr2R	9151261	9151319	chr2R	9157781	9157839	Burdock	17	6520	14.5	10.0	12.2	1.3	6578	chr2R	9151261	exon	CG30345 +	chr2R	9154550	intergenic	not near genes	chr2R	9157839	intergenic	CG8008 -	chr2R_17_9150001	chr2R_9150001	RAL-850
932	chr2R	9212659	9212703	chr2R	9213195	9213220	roo	13	534	13.0	5.0	9.0	1.3	561	chr2R	9212659	intergenic	CR45309 +	chr2R	9212940	intergenic	CR45309 +	chr2R	9213220	5` UTR	CR45309 +	chr2R_13_9210001	chr2R_9210001	RAL-850
941	chr2R	9480040	9480074	chr2R	9490621	9490655	roo	14	10580	11.5	6.0	8.8	1.4	10615	chr2R	9480040	intergenic	not near genes	chr2R	9485348	intergenic	not near genes	chr2R	9490655	intergenic	not near genes	chr2R_14_9485001	chr2R_9485001	RAL-850
950	chr2R	9726573	9726629	chr2R	9734176	9734232	17.6	10	7603	10.0	7.5	8.8	1.0	7659	chr2R	9726573	intron	sqa -	chr2R	9730402	intron	sqa -	chr2R	9734232	intron	sqa -	chr2R_10_9730001	chr2R_9730001	RAL-850
952	chr2R	9871023	9871060	chr2R	9871544	9871556	roo	16	529	0.5	9.0	4.8	2.8	533	chr2R	9871023	intron	cbx -	chr2R	9871290	intron	cbx -	chr2R	9871556	intron,5` UTR	cbx -,CG18446 +	chr2R_16_9870001	chr2R_9870001	RAL-850
953	chr2R	9871062	9871072	chr2R	9871543	9871548	roo	10	515	0.5	9.0	4.8	1.7	486	chr2R	9871062	intron	cbx -	chr2R	9871305	intron	cbx -	chr2R	9871548	intron,5` UTR	cbx -,CG18446 +	chr2R_10_9870001	chr2R_9870001	RAL-850
955	chr2R	9945403	9945464	chr2R	9945649	9945710	BS	23	245	8.0	6.0	7.0	2.9	307	chr2R	9945403	intron	Mef2 -	chr2R	9945556	intron	Mef2 -	chr2R	9945710	intron	Mef2 -	chr2R_23_9945001	chr2R_9945001	RAL-850
958	chr2R	10005807	10005814	chr2R	10007022	10007029	1360	4	1215	20.5	12.0	16.2	0.2	1222	chr2R	10005807	intron	Pka-R2 -	chr2R	10006418	intron	Pka-R2 -	chr2R	10007029	intron	Pka-R2 -	chr2R_4_10005001	chr2R_10005001	RAL-850
959	chr2R	10005817	10005832	chr2R	10007017	10007039	1360	13	1212	18.5	10.5	14.5	0.8	1222	chr2R	10005817	intron	Pka-R2 -	chr2R	10006428	intron	Pka-R2 -	chr2R	10007039	intron	Pka-R2 -	chr2R_13_10005001	chr2R_10005001	RAL-850
960	chr2R	10005839	10005878	chr2R	10007014	10007068	1360	19	1199	8.0	10.0	9.0	1.9	1229	chr2R	10005839	intron	Pka-R2 -	chr2R	10006454	intron	Pka-R2 -	chr2R	10007068	intron	Pka-R2 -	chr2R_19_10005001	chr2R_10005001	RAL-850
968	chr2R	10176840	10176904	chr2R	10186052	10186121	roo	34	9216	8.0	10.0	9.0	3.4	9281	chr2R	10176840	intron	KCNQ -	chr2R	10181480	intron	KCNQ -	chr2R	10186121	intron	KCNQ -	chr2R_34_10180001	chr2R_10180001	RAL-850
987	chr2R	10585511	10585583	chr2R	10594144	10594201	Tirant	6	8621	5.0	5.0	5.0	1.0	8690	chr2R	10585511	intron	psq +	chr2R	10589856	intron	psq +	chr2R	10594201	intron	psq +	chr2R_6_10585001	chr2R_10585001	RAL-850
1000	chr2R	10948013	10948052	chr2R	10955612	10955652	17.6	14	7599	2.0	17.0	9.5	1.3	7639	chr2R	10948013	intergenic	not near genes	chr2R	10951832	intergenic	not near genes	chr2R	10955652	intergenic	not near genes	chr2R_14_10950001	chr2R_10950001	RAL-850
1002	chr2R	10979626	10979681	chr2R	10980126	10980199	297	16	511	6.0	7.0	6.5	2.1	573	chr2R	10979626	intergenic	not near genes	chr2R	10979912	intergenic	not near genes	chr2R	10980199	intergenic	not near genes	chr2R_16_10975001	chr2R_10975001	RAL-850
1003	chr2R	11009774	11009840	chr2R	11018998	11019059	roo	30	9221	10.5	13.5	12.0	2.3	9285	chr2R	11009774	intron	luna -	chr2R	11014416	intron	luna -	chr2R	11019059	intron	luna -	chr2R_30_11010001	chr2R_11010001	RAL-850
1004	chr2R	11019837	11019894	chr2R	11024951	11025010	jockey	17	5113	7.0	5.5	6.2	2.4	5173	chr2R	11019837	intron	luna -	chr2R	11022424	intron	luna -	chr2R	11025010	intron	luna -	chr2R_17_11020001	chr2R_11020001	RAL-850
1012	chr2R	11207782	11207835	chr2R	11208025	11208071	BS	22	242	11.5	12.0	11.8	1.7	289	chr2R	11207782	intron	shn +	chr2R	11207926	intron	shn +	chr2R	11208071	intron	shn +	chr2R_22_11205001	chr2R_11205001	RAL-850
1014	chr2R	11297583	11297592	chr2R	11301954	11301963	flea	5	4371	24.0	13.0	18.5	0.3	4380	chr2R	11297583	intergenic	CG42336 -	chr2R	11299773	intergenic	not near genes	chr2R	11301963	5` UTR	CG7741 +	chr2R_5_11295001	chr2R_11295001	RAL-850
1015	chr2R	11297593	11297615	chr2R	11301949	11301954	flea	16	4363	16.0	12.0	14.0	1.1	4361	chr2R	11297593	intergenic	CG42336 -	chr2R	11299774	intergenic	not near genes	chr2R	11301954	5` UTR	CG7741 +	chr2R_16_11295001	chr2R_11295001	RAL-850
1016	chr2R	11297616	11297639	chr2R	11301942	11302010	flea	10	4362	12.5	9.5	11.0	0.8	4394	chr2R	11297616	intergenic	CG42336 -	chr2R	11299813	intergenic	not near genes	chr2R	11302010	5` UTR	CG7741 +	chr2R_10_11295001	chr2R_11295001	RAL-850
1023	chr2R	11415476	11415504	chr2R	11418675	11418691	opus	11	3196	13.0	14.5	13.8	0.7	3215	chr2R	11415476	intron	Drip -	chr2R	11417084	intron	Drip -	chr2R	11418691	intron	Drip -	chr2R_11_11415001	chr2R_11415001	RAL-850
1024	chr2R	11415505	11415544	chr2R	11418672	11418743	opus	14	3196	6.0	14.0	10.0	1.3	3238	chr2R	11415505	intron	Drip -	chr2R	11417124	intron	Drip -	chr2R	11418743	intron	Drip -	chr2R_14_11415001	chr2R_11415001	RAL-850
1027	chr2R	11472605	11472676	chr2R	11473852	11473923	pogo	38	1245	11.0	10.5	10.8	3.2	1318	chr2R	11472605	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473923	intergenic	not near genes	chr2R_38_11470001	chr2R_11470001	RAL-850
1059	chr2R	12481144	12481151	chr2R	12482981	12483005	roo	5	1843	9.0	18.5	13.8	0.3	1861	chr2R	12481144	exon	Dh44-R2 +	chr2R	12482074	intron	Dh44-R2 +	chr2R	12483005	intron	Dh44-R2 +	chr2R_5_12480001	chr2R_12480001	RAL-850
1060	chr2R	12481156	12481165	chr2R	12482954	12482960	roo	8	1823	8.0	12.0	10.0	0.7	1804	chr2R	12481156	exon	Dh44-R2 +	chr2R	12482058	intron	Dh44-R2 +	chr2R	12482960	intron	Dh44-R2 +	chr2R_8_12480001	chr2R_12480001	RAL-850
1061	chr2R	12501651	12501659	chr2R	12503863	12503870	Rt1c	4	2212	31.5	11.5	21.5	0.2	2219	chr2R	12501651	intron	fdl -	chr2R	12502760	intron	fdl -	chr2R	12503870	intron	fdl -	chr2R_4_12500001	chr2R_12500001	RAL-850
1062	chr2R	12501660	12501722	chr2R	12503859	12503886	Rt1c	23	2200	13.0	11.0	12.0	1.8	2226	chr2R	12501660	intron	fdl -	chr2R	12502773	intron	fdl -	chr2R	12503886	intron	fdl -	chr2R_23_12500001	chr2R_12500001	RAL-850
1072	chr2R	12707475	12707548	chr2R	12715889	12715964	roo	18	8416	8.0	2.0	5.0	3.0	8489	chr2R	12707475	intron	CG42663 +	chr2R	12711720	intron	CG42663 +	chr2R	12715964	intron	CG42663 +	chr2R_18_12710001	chr2R_12710001	RAL-850
1076	chr2R	12789271	12789288	chr2R	12797673	12797675	roo	6	8406	12.5	10.5	11.5	0.5	8404	chr2R	12789271	intron,3` UTR	sca +,CR45137 -	chr2R	12793473	intron,intron	sca +,CR45137 -	chr2R	12797675	intron,3` UTR	sca +,CR45137 -	chr2R_6_12790001	chr2R_12790001	RAL-850
1077	chr2R	12789292	12789327	chr2R	12797671	12797708	roo	21	8396	8.5	10.5	9.5	2.0	8416	chr2R	12789292	intron,3` UTR	sca +,CR45137 -	chr2R	12793500	intron,intron	sca +,CR45137 -	chr2R	12797708	intron,3` UTR	sca +,CR45137 -	chr2R_21_12790001	chr2R_12790001	RAL-850
1078	chr2R	12819403	12819469	chr2R	12824532	12824596	jockey	27	5126	11.5	11.0	11.2	2.2	5193	chr2R	12819403	intergenic	not near genes	chr2R	12822000	intergenic	not near genes	chr2R	12824596	intergenic	not near genes	chr2R_27_12820001	chr2R_12820001	RAL-850
1079	chr2R	12856963	12856967	chr2R	12868317	12868321	accord	5	11354	24.0	14.0	19.0	0.2	11358	chr2R	12856963	intron	CG17574 -	chr2R	12862642	intron	CG17574 -	chr2R	12868321	intron,intron	CG17574 -,CR45140 +	chr2R_5_12860001	chr2R_12860001	RAL-850
1080	chr2R	12856970	12856979	chr2R	12868324	12868333	accord	5	11354	24.0	13.0	18.5	0.3	11363	chr2R	12856970	intron	CG17574 -	chr2R	12862652	intron	CG17574 -	chr2R	12868333	intron,intron	CG17574 -,CR45140 +	chr2R_5_12860001	chr2R_12860001	RAL-850
1087	chr2R	13136800	13136864	chr2R	13141648	13141687	Doc	30	4846	10.5	13.0	11.8	2.3	4887	chr2R	13136800	exon	Cap-G +	chr2R	13139244	intron	Cap-G +	chr2R	13141687	intron	Cap-G +	chr2R_30_13135001	chr2R_13135001	RAL-850
1099	chr2R	13580485	13580502	chr2R	13580885	13580901	jockey	12	399	0.0	13.5	6.8	1.5	416	chr2R	13580485	3` UTR	CG6191 -	chr2R	13580693	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580901	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_12_13580001	chr2R_13580001	RAL-850
1100	chr2R	13580506	13580521	chr2R	13580851	13580921	jockey	10	386	0.0	6.0	3.0	2.5	415	chr2R	13580506	3` UTR	CG6191 -	chr2R	13580714	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580921	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_10_13580001	chr2R_13580001	RAL-850
1111	chr2R	13728095	13728155	chr2R	13735802	13735862	opus	21	7707	5.5	8.0	6.8	2.7	7767	chr2R	13728095	intron	fas +	chr2R	13731978	intron	fas +	chr2R	13735862	intron	fas +	chr2R_21_13730001	chr2R_13730001	RAL-850
1115	chr2R	13839537	13839557	chr2R	13839687	13839707	INE-1	6	150	10.0	3.5	6.8	0.8	170	chr2R	13839537	intergenic	CG6347 +	chr2R	13839622	intergenic	CG6347 +,CG6357 +	chr2R	13839707	intergenic	CG6347 +,CG6357 +	chr2R_6_13835001	chr2R_13835001	RAL-850
1117	chr2R	13905567	13905620	chr2R	13907599	13907652	Rt1a	25	2029	13.5	15.5	14.5	1.6	2085	chr2R	13905567	intron	shot -	chr2R	13906610	intron	shot -	chr2R	13907652	intron	shot -	chr2R_25_13905001	chr2R_13905001	RAL-850
1133	chr2R	14394189	14394198	chr2R	14399028	14399037	Doc	4	4839	26.0	7.0	16.5	0.2	4848	chr2R	14394189	intergenic	not near genes	chr2R	14396613	intergenic	not near genes	chr2R	14399037	intergenic	not near genes	chr2R_4_14395001	chr2R_14395001	RAL-850
1135	chr2R	14467243	14467316	chr2R	14476445	14476518	roo	29	9199	9.0	7.5	8.2	3.2	9275	chr2R	14467243	intergenic	not near genes	chr2R	14471880	intergenic	not near genes	chr2R	14476518	5` UTR	CR44462 +	chr2R_29_14470001	chr2R_14470001	RAL-850
1136	chr2R	14497347	14497407	chr2R	14498561	14498623	1360	36	1215	9.0	8.5	8.8	3.7	1276	chr2R	14497347	3` UTR	Cpsf160 -	chr2R	14497985	intron	Cpsf160 -	chr2R	14498623	3` UTR	Cpsf160 -	chr2R_36_14495001	chr2R_14495001	RAL-850
1155	chr2R	14889168	14889241	chr2R	14897826	14897891	Max-element	33	8654	13.5	0.0	6.8	4.2	8723	chr2R	14889168	intergenic	Cyp6a8 -	chr2R	14893530	intergenic	not near genes	chr2R	14897891	intergenic	not near genes	chr2R_33_14890001	chr2R_14890001	RAL-850
1167	chr2R	15015422	15015436	chr2R	15022894	15022908	mdg1	4	7472	15.0	6.0	10.5	0.3	7486	chr2R	15015422	intron	hbs +	chr2R	15019165	intron	hbs +	chr2R	15022908	intron	hbs +	chr2R_4_15015001	chr2R_15015001	RAL-850
1168	chr2R	15015444	15015483	chr2R	15022885	15022957	mdg1	13	7470	8.0	4.5	6.2	1.8	7513	chr2R	15015444	intron	hbs +	chr2R	15019200	intron	hbs +	chr2R	15022957	intron	hbs +	chr2R_13_15015001	chr2R_15015001	RAL-850
1171	chr2R	15084938	15084989	chr2R	15092037	15092088	297	14	7096	10.5	8.0	9.2	1.4	7150	chr2R	15084938	intergenic	not near genes	chr2R	15088513	intergenic	not near genes	chr2R	15092088	5` UTR	CR44457 +	chr2R_14_15085001	chr2R_15085001	RAL-850
1172	chr2R	15119271	15119344	chr2R	15127802	15127857	Tirant	23	8523	10.5	5.5	8.0	2.6	8586	chr2R	15119271	intron	chn +	chr2R	15123564	intron	chn +	chr2R	15127857	intron	chn +	chr2R_23_15120001	chr2R_15120001	RAL-850
1180	chr2R	15340650	15340663	chr2R	15349283	15349295	Tirant	10	8633	16.5	8.5	12.5	0.7	8645	chr2R	15340650	intron	unc-5 +	chr2R	15344972	intron	unc-5 +	chr2R	15349295	intron	unc-5 +	chr2R_10_15340001	chr2R_15340001	RAL-850
1195	chr2R	16061687	16061706	chr2R	16064370	16064389	Burdock	12	2683	16.5	9.0	12.8	0.9	2702	chr2R	16061687	intergenic	not near genes	chr2R	16063038	intergenic	not near genes	chr2R	16064389	intergenic	not near genes	chr2R_12_16060001	chr2R_16060001	RAL-850
1200	chr2R	16539600	16539655	chr2R	16544859	16544914	copia	20	5258	9.5	9.0	9.2	2.0	5314	chr2R	16539600	intergenic	not near genes	chr2R	16542257	intergenic	not near genes	chr2R	16544914	intergenic	not near genes	chr2R_20_16540001	chr2R_16540001	RAL-850
1221	chr2R	17147209	17147259	chr2R	17152287	17152340	jockey	14	5079	8.0	13.0	10.5	1.2	5131	chr2R	17147209	intergenic	not near genes	chr2R	17149774	intergenic	not near genes	chr2R	17152340	intergenic	not near genes	chr2R_14_17145001	chr2R_17145001	RAL-850
1223	chr2R	17176369	17176384	chr2R	17182609	17182624	diver	7	6240	0.0	20.0	10.0	0.6	6255	chr2R	17176369	intergenic	not near genes	chr2R	17179496	intergenic	not near genes	chr2R	17182624	intergenic	not near genes	chr2R_7_17175001	chr2R_17175001	RAL-850
1224	chr2R	17236465	17236518	chr2R	17241719	17241772	copia	23	5252	9.5	7.0	8.2	2.5	5307	chr2R	17236465	intron	mbl +	chr2R	17239118	intron	mbl +	chr2R	17241772	intron	mbl +	chr2R_23_17235001	chr2R_17235001	RAL-850
1234	chr2R	17485876	17485944	chr2R	17490688	17490754	F-element	21	4811	9.5	12.0	10.8	1.8	4878	chr2R	17485876	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488315	intron	NT5E-2 +	chr2R	17490754	intron	NT5E-2 +	chr2R_21_17485001	chr2R_17485001	RAL-850
1240	chr2R	17782322	17782386	chr2R	17783575	17783639	pogo	14	1253	3.0	6.5	4.8	2.4	1317	chr2R	17782322	intergenic	CG33981 -,fab1 -	chr2R	17782980	intergenic	not near genes	chr2R	17783639	intergenic	mir-31a -	chr2R_14_17780001	chr2R_17780001	RAL-850
1241	chr2R	17783982	17784052	chr2R	17784273	17784313	pogo	41	286	14.0	13.0	13.5	2.8	331	chr2R	17783982	intergenic	mir-31a -	chr2R	17784148	intergenic	mir-31a -	chr2R	17784313	intergenic	mir-31a -	chr2R_41_17780001	chr2R_17780001	RAL-850
1250	chr2R	18045626	18045697	chr2R	18046028	18046099	jockey	19	402	7.5	6.0	6.8	2.4	473	chr2R	18045626	intergenic	not near genes	chr2R	18045862	intergenic	not near genes	chr2R	18046099	intergenic	CG5767 -	chr2R_19_18045001	chr2R_18045001	RAL-850
1252	chr2R	18111647	18111698	chr2R	18115565	18115616	F-element	19	3918	9.0	10.5	9.8	1.8	3969	chr2R	18111647	intergenic	not near genes	chr2R	18113632	intergenic	not near genes	chr2R	18115616	intergenic	not near genes	chr2R_19_18110001	chr2R_18110001	RAL-850
1261	chr2R	18358350	18358409	chr2R	18372612	18372671	roo	23	14262	13.0	12.5	12.8	1.7	14321	chr2R	18358350	intergenic	not near genes	chr2R	18365510	intergenic	not near genes	chr2R	18372671	intergenic	not near genes	chr2R_23_18365001	chr2R_18365001	RAL-850
1266	chr2R	18487788	18487828	chr2R	18495289	18495329	blood	15	7500	9.0	7.0	8.0	1.7	7541	chr2R	18487788	intron	CG30116 -	chr2R	18491558	intron	CG30116 -	chr2R	18495329	intron	CG30116 -	chr2R_15_18490001	chr2R_18490001	RAL-850
1269	chr2R	18575750	18575810	chr2R	18581988	18582006	3S18	10	6232	13.0	9.5	11.2	0.8	6256	chr2R	18575750	intron	GEFmeso -	chr2R	18578878	intron	GEFmeso -	chr2R	18582006	intron	GEFmeso -	chr2R_10_18575001	chr2R_18575001	RAL-850
1270	chr2R	18575811	18575825	chr2R	18581983	18582063	3S18	26	6211	10.0	9.0	9.5	2.5	6252	chr2R	18575811	intron	GEFmeso -	chr2R	18578937	intron	GEFmeso -	chr2R	18582063	intron	GEFmeso -	chr2R_26_18575001	chr2R_18575001	RAL-850
1271	chr2R	18590822	18590901	chr2R	18600024	18600063	roo	28	9196	7.5	12.0	9.8	2.6	9241	chr2R	18590822	intron	GEFmeso -	chr2R	18595442	intron	GEFmeso -	chr2R	18600063	intron	GEFmeso -	chr2R_28_18595001	chr2R_18595001	RAL-850
1302	chr2R	19715813	19715855	chr2R	19723332	19723373	blood	14	7518	11.0	14.0	12.5	1.0	7560	chr2R	19715813	intergenic	not near genes	chr2R	19719593	intergenic	not near genes	chr2R	19723373	intergenic	not near genes	chr2R_14_19715001	chr2R_19715001	RAL-850
1303	chr2R	19776555	19776565	chr2R	19779923	19779938	jockey	8	3372	25.5	11.0	18.2	0.4	3383	chr2R	19776555	intergenic	not near genes	chr2R	19778246	intergenic	not near genes	chr2R	19779938	intergenic	not near genes	chr2R_8_19775001	chr2R_19775001	RAL-850
1304	chr2R	19776567	19776613	chr2R	19779919	19779986	jockey	26	3370	16.5	10.0	13.2	1.8	3419	chr2R	19776567	intergenic	not near genes	chr2R	19778276	intergenic	not near genes	chr2R	19779986	intergenic	not near genes	chr2R_26_19775001	chr2R_19775001	RAL-850
1307	chr2R	19914809	19914862	chr2R	19922271	19922319	mdg1	10	7462	8.5	10.5	9.5	1.0	7510	chr2R	19914809	intergenic	not near genes	chr2R	19918564	intergenic	not near genes	chr2R	19922319	intergenic	not near genes	chr2R_10_19915001	chr2R_19915001	RAL-850
1308	chr2R	19957383	19957459	chr2R	19962636	19962704	copia	12	5246	4.0	5.5	4.8	2.1	5321	chr2R	19957383	intergenic	CG44623 +	chr2R	19960044	intergenic	not near genes	chr2R	19962704	intergenic	not near genes	chr2R_12_19960001	chr2R_19960001	RAL-850
1311	chr2R	20069190	20069246	chr2R	20071878	20071928	opus	17	2687	0.0	8.5	4.2	3.3	2738	chr2R	20069190	intergenic	not near genes	chr2R	20070559	intergenic	not near genes	chr2R	20071928	intergenic	not near genes	chr2R_17_20070001	chr2R_20070001	RAL-850
1322	chr2R	20368472	20368496	chr2R	20377709	20377733	roo	9	9235	8.5	10.5	9.5	0.9	9261	chr2R	20368472	intergenic	not near genes	chr2R	20373102	intergenic	not near genes	chr2R	20377733	intergenic	not near genes	chr2R_9_20370001	chr2R_20370001	RAL-850
1343	chr2R	20739406	20739459	chr2R	20744224	20744247	F-element	15	4812	13.5	9.0	11.2	1.2	4841	chr2R	20739406	intron	dpr +	chr2R	20741826	intron	dpr +	chr2R	20744247	intron	dpr +	chr2R_15_20740001	chr2R_20740001	RAL-850
1347	chr2R	20783262	20783322	chr2R	20788084	20788144	F-element	22	4819	10.5	9.0	9.8	2.0	4882	chr2R	20783262	intergenic	not near genes	chr2R	20785703	intergenic	not near genes	chr2R	20788144	intergenic	CG43666 -	chr2R_22_20785001	chr2R_20785001	RAL-850
1356	chr2R	21151101	21151146	chr2R	21153763	21153829	opus	15	2676	1.0	11.0	6.0	2.1	2728	chr2R	21151101	intron	CG30389 -	chr2R	21152465	intron	CG30389 -	chr2R	21153829	intron	CG30389 -	chr2R_15_21150001	chr2R_21150001	RAL-850
1370	chr2R	21738240	21738280	chr2R	21747450	21747478	roo	10	9199	9.0	10.5	9.8	0.9	9238	chr2R	21738240	intergenic	not near genes	chr2R	21742859	intergenic	not near genes	chr2R	21747478	intergenic	not near genes	chr2R_10_21740001	chr2R_21740001	RAL-850
1371	chr2R	21738284	21738303	chr2R	21747440	21747513	roo	9	9181	4.0	8.0	6.0	1.3	9229	chr2R	21738284	intergenic	not near genes	chr2R	21742898	intergenic	not near genes	chr2R	21747513	intergenic	not near genes	chr2R_9_21740001	chr2R_21740001	RAL-850
1372	chr2R	21753040	21753117	chr2R	21753575	21753606	roo	42	533	9.0	7.0	8.0	4.7	566	chr2R	21753040	intergenic	not near genes	chr2R	21753323	intergenic	not near genes	chr2R	21753606	intergenic	not near genes	chr2R_42_21750001	chr2R_21750001	RAL-850
1375	chr2R	21809484	21809544	chr2R	21817774	21817812	roo	30	8289	8.0	13.0	10.5	2.6	8328	chr2R	21809484	intergenic	not near genes	chr2R	21813648	intergenic	not near genes	chr2R	21817812	intergenic	not near genes	chr2R_30_21810001	chr2R_21810001	RAL-850
1394	chr2R	22349651	22349720	chr2R	22351485	22351519	jockey	22	1830	13.5	8.5	11.0	1.8	1868	chr2R	22349651	intron	Liprin-gamma -	chr2R	22350585	intron	Liprin-gamma -	chr2R	22351519	intron	Liprin-gamma -	chr2R_22_22350001	chr2R_22350001	RAL-850
1395	chr2R	22360339	22360346	chr2R	22360822	22360828	jockey	4	483	19.5	6.5	13.0	0.3	489	chr2R	22360339	intron	Liprin-gamma -	chr2R	22360584	intron	Liprin-gamma -	chr2R	22360828	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	RAL-850
1401	chr2R	22525706	22525779	chr2R	22529311	22529339	jockey	31	3602	6.5	8.0	7.2	3.8	3633	chr2R	22525706	intron	px -	chr2R	22527522	intron	px -	chr2R	22529339	intron	px -	chr2R_31_22525001	chr2R_22525001	RAL-850
1409	chr2R	22580387	22580444	chr2R	22586581	22586638	diver	21	6194	10.0	9.0	9.5	2.0	6251	chr2R	22580387	intron	dnr1 -	chr2R	22583512	intron	dnr1 -	chr2R	22586638	intron	dnr1 -	chr2R_21_22580001	chr2R_22580001	RAL-850
1416	chr2R	22729419	22729466	chr2R	22729667	22729724	INE-1	21	256	11.0	10.0	10.5	1.8	305	chr2R	22729419	intron	jbug -	chr2R	22729572	intron	jbug -	chr2R	22729724	intron	jbug -	chr2R_21_22725001	chr2R_22725001	RAL-850
1421	chr2R	22774917	22774987	chr2R	22775386	22775456	jockey	28	468	9.5	6.0	7.8	3.2	539	chr2R	22774917	intron	CG42260 -	chr2R	22775186	intron	CG42260 -	chr2R	22775456	intron	CG42260 -	chr2R_28_22775001	chr2R_22775001	RAL-850
1422	chr2R	22842989	22843043	chr2R	22845001	22845055	flea	8	2012	10.0	9.0	9.5	0.8	2066	chr2R	22842989	intergenic	CG9826 +	chr2R	22844022	intergenic	not near genes	chr2R	22845055	intergenic	not near genes	chr2R_8_22840001	chr2R_22840001	RAL-850
1442	chr2R	23402586	23402603	chr2R	23407683	23407700	flea	8	5097	5.5	10.0	7.8	0.9	5114	chr2R	23402586	intergenic	CG3520 -	chr2R	23405143	intergenic	not near genes	chr2R	23407700	intergenic	not near genes	chr2R_8_23405001	chr2R_23405001	RAL-850
1448	chr2R	23529525	23529543	chr2R	23537151	23537169	412	6	7626	17.5	8.5	13.0	0.4	7644	chr2R	23529525	exon	bw -	chr2R	23533347	intron	bw -	chr2R	23537169	exon	bw -	chr2R_6_23530001	chr2R_23530001	RAL-850
1449	chr2R	23529548	23529586	chr2R	23537149	23537196	412	26	7609	7.5	8.5	8.0	2.9	7648	chr2R	23529548	intron	bw -	chr2R	23533372	intron	bw -	chr2R	23537196	exon	bw -	chr2R_26_23530001	chr2R_23530001	RAL-850
1461	chr2R	23914253	23914328	chr2R	23921927	23921984	412	29	7671	8.0	10.0	9.0	2.9	7731	chr2R	23914253	exon	kcc +	chr2R	23918118	intron	kcc +	chr2R	23921984	exon	kcc +	chr2R_29_23915001	chr2R_23915001	RAL-850
1465	chr2R	24147029	24147086	chr2R	24154657	24154714	412	12	7622	6.0	11.0	8.5	1.3	7685	chr2R	24147029	intron	Dat +	chr2R	24150872	intron	Dat +	chr2R	24154714	intron	Dat +	chr2R_12_24150001	chr2R_24150001	RAL-850
1466	chr2R	24177191	24177254	chr2R	24184726	24184789	412	25	7534	13.0	3.0	8.0	2.8	7598	chr2R	24177191	3` UTR	Nop60B +	chr2R	24180990	intron	Nop60B +	chr2R	24184789	3` UTR	Nop60B +	chr2R_25_24180001	chr2R_24180001	RAL-850
1471	chr2R	24353377	24353427	chr2R	24361788	24361829	roo	10	8411	11.5	8.5	10.0	0.9	8452	chr2R	24353377	intron,intron	bs +,CR44811 -	chr2R	24357603	intron,intron	bs +,CR44811 -	chr2R	24361829	intron,intron	bs +,CR44811 -	chr2R_10_24355001	chr2R_24355001	RAL-850
1476	chr2R	24647525	24647534	chr2R	24655146	24655147	412	5	7619	17.0	8.5	12.8	0.4	7622	chr2R	24647525	intergenic	not near genes	chr2R	24651336	intergenic	not near genes	chr2R	24655147	intergenic	not near genes	chr2R_5_24650001	chr2R_24650001	RAL-850
1477	chr2R	24647535	24647605	chr2R	24655145	24655212	412	18	7619	0.5	8.0	4.2	3.5	7677	chr2R	24647535	intergenic	not near genes	chr2R	24651374	intergenic	not near genes	chr2R	24655212	intergenic	not near genes	chr2R_18_24650001	chr2R_24650001	RAL-850
1479	chr2R	24727848	24727863	chr2R	24735396	24735400	mdg1	7	7547	29.0	12.0	20.5	0.3	7552	chr2R	24727848	intron	Mid1 -	chr2R	24731624	intron	Mid1 -	chr2R	24735400	intron	Mid1 -	chr2R_7_24730001	chr2R_24730001	RAL-850
1480	chr2R	24727866	24727913	chr2R	24735395	24735453	mdg1	31	7546	11.5	12.0	11.8	2.4	7587	chr2R	24727866	intron	Mid1 -	chr2R	24731660	intron	Mid1 -	chr2R	24735453	intron	Mid1 -	chr2R_31_24730001	chr2R_24730001	RAL-850
1481	chr2R	24763573	24763583	chr2R	24765595	24765603	G2	4	2021	18.0	14.0	16.0	0.2	2030	chr2R	24763573	exon	CG3894 +	chr2R	24764588	intron	CG3894 +	chr2R	24765603	exon	CG3894 +	chr2R_4_24760001	chr2R_24760001	RAL-850
1482	chr2R	24763586	24763597	chr2R	24765591	24765623	G2	9	2013	14.0	13.0	13.5	0.6	2037	chr2R	24763586	exon	CG3894 +	chr2R	24764604	intron	CG3894 +	chr2R	24765623	exon	CG3894 +	chr2R_9_24760001	chr2R_24760001	RAL-850
1483	chr2R	24763599	24763638	chr2R	24765590	24765632	G2	20	2016	10.5	12.5	11.5	1.6	2033	chr2R	24763599	exon	CG3894 +	chr2R	24764616	intron	CG3894 +	chr2R	24765632	exon	CG3894 +	chr2R_20_24760001	chr2R_24760001	RAL-850
1494	chr2R	25141621	25141676	chr2R	25159361	25159416	roo	22	17740	8.0	9.5	8.8	2.2	17795	chr2R	25141621	intergenic	not near genes	chr2R	25150518	intergenic	not near genes	chr2R	25159416	intergenic	not near genes	chr2R_22_25150001	chr2R_25150001	RAL-850
1499	chr3L	110169	110236	chr3L	119386	119453	roo	32	9217	11.0	8.0	9.5	3.0	9284	chr3L	110169	intergenic	not near genes	chr3L	114811	intergenic	not near genes	chr3L	119453	intergenic	not near genes	chr3L_32_110001	chr3L_110001	RAL-850
1503	chr3L	402653	402698	chr3L	409756	409801	297	23	7099	16.0	10.5	13.2	1.6	7148	chr3L	402653	intergenic	not near genes	chr3L	406227	intergenic	not near genes	chr3L	409801	intergenic	not near genes	chr3L_23_405001	chr3L_405001	RAL-850
1504	chr3L	402699	402710	chr3L	409750	409813	297	10	7096	11.5	10.0	10.8	0.8	7114	chr3L	402699	intergenic	not near genes	chr3L	406256	intergenic	not near genes	chr3L	409813	intergenic	not near genes	chr3L_10_405001	chr3L_405001	RAL-850
1513	chr3L	789863	789947	chr3L	790398	790483	roo	15	534	0.5	0.0	0.2	12.5	620	chr3L	789863	intergenic	not near genes	chr3L	790173	intergenic	not near genes	chr3L	790483	intergenic	not near genes	chr3L_15_790001	chr3L_790001	RAL-850
1517	chr3L	857963	858026	chr3L	866483	866557	Tirant	30	8518	12.5	8.0	10.2	2.7	8594	chr3L	857963	intergenic	not near genes	chr3L	862260	intergenic	not near genes	chr3L	866557	5` UTR	CG12502 +	chr3L_30_860001	chr3L_860001	RAL-850
1521	chr3L	925132	925198	chr3L	932608	932674	mdg1	24	7473	8.5	3.5	6.0	3.4	7542	chr3L	925132	intron	Glut1 +	chr3L	928903	intron	Glut1 +	chr3L	932674	intron	Glut1 +	chr3L_24_925001	chr3L_925001	RAL-850
1523	chr3L	939737	939740	chr3L	940908	940911	jockey	5	1171	20.0	11.5	15.8	0.3	1174	chr3L	939737	intron	Glut1 +	chr3L	940324	intron	Glut1 +	chr3L	940911	intron	Glut1 +	chr3L_5_940001	chr3L_940001	RAL-850
1524	chr3L	939745	939795	chr3L	940905	940933	jockey	21	1168	11.0	11.5	11.2	1.7	1188	chr3L	939745	intron	Glut1 +	chr3L	940339	intron	Glut1 +	chr3L	940933	intron	Glut1 +	chr3L_21_940001	chr3L_940001	RAL-850
1529	chr3L	1047320	1047380	chr3L	1055169	1055234	412	13	7839	7.0	5.5	6.2	1.8	7914	chr3L	1047320	intron	bab1 -	chr3L	1051277	intron	bab1 -	chr3L	1055234	intron	bab1 -	chr3L_13_1050001	chr3L_1050001	RAL-850
1531	chr3L	1154080	1154159	chr3L	1163283	1163333	roo	27	9197	8.0	8.0	8.0	3.0	9253	chr3L	1154080	intron	bab2 -	chr3L	1158706	intron	bab2 -	chr3L	1163333	intron	bab2 -	chr3L_27_1155001	chr3L_1155001	RAL-850
1535	chr3L	1219562	1219619	chr3L	1227327	1227377	412	26	7772	8.0	11.0	9.5	2.5	7815	chr3L	1219562	intron	mwh +	chr3L	1223470	intron	mwh +	chr3L	1227377	intron	mwh +	chr3L_26_1220001	chr3L_1220001	RAL-850
1545	chr3L	1424757	1424766	chr3L	1430025	1430063	Rt1a	7	5294	0.0	12.0	6.0	1.0	5306	chr3L	1424757	intron	Ptp61F -	chr3L	1427410	intron	Ptp61F -	chr3L	1430063	intron	Ptp61F -	chr3L_7_1425001	chr3L_1425001	RAL-850
1546	chr3L	1485691	1485743	chr3L	1486908	1486918	1360	19	1209	12.5	26.0	19.2	0.9	1227	chr3L	1485691	intron	stet -	chr3L	1486304	intron	stet -	chr3L	1486918	intron	stet -	chr3L_19_1485001	chr3L_1485001	RAL-850
1547	chr3L	1505958	1506021	chr3L	1513601	1513668	17.6	23	7645	10.0	9.0	9.5	2.2	7710	chr3L	1505958	intron,intron	Psa +,cue -	chr3L	1509813	intron,intron	Psa +,cue -	chr3L	1513668	intron,intron	Psa +,cue -	chr3L_23_1505001	chr3L_1505001	RAL-850
1555	chr3L	1740814	1740880	chr3L	1741107	1741127	pogo	22	287	12.5	12.0	12.2	1.7	313	chr3L	1740814	intron	Gk +	chr3L	1740970	intron	Gk +	chr3L	1741127	intron	Gk +	chr3L_22_1740001	chr3L_1740001	RAL-850
1565	chr3L	2108210	2108273	chr3L	2113464	2113527	copia	23	5254	7.0	11.5	9.2	2.3	5317	chr3L	2108210	intron	sls -	chr3L	2110868	intron	sls -	chr3L	2113527	intron	sls -	chr3L_23_2110001	chr3L_2110001	RAL-850
1578	chr3L	2447462	2447472	chr3L	2456668	2456673	roo	4	9205	15.0	14.5	14.8	0.3	9211	chr3L	2447462	intron	CG45186 +	chr3L	2452068	intron	CG45186 +	chr3L	2456673	intron	CG45186 +	chr3L_4_2450001	chr3L_2450001	RAL-850
1579	chr3L	2447474	2447532	chr3L	2456665	2456732	roo	26	9200	6.5	14.0	10.2	2.3	9258	chr3L	2447474	intron	CG45186 +	chr3L	2452103	intron	CG45186 +	chr3L	2456732	intron	CG45186 +	chr3L_26_2450001	chr3L_2450001	RAL-850
1587	chr3L	2751413	2751454	chr3L	2755758	2755799	F-element	18	4345	5.0	10.0	7.5	2.1	4386	chr3L	2751413	intron	Mrtf -	chr3L	2753606	intron	Mrtf -	chr3L	2755799	intron	Mrtf -	chr3L_18_2750001	chr3L_2750001	RAL-850
1595	chr3L	2927795	2927859	chr3L	2936122	2936151	Tirant	27	8325	10.0	6.5	8.2	2.9	8356	chr3L	2927795	intron	Shab +	chr3L	2931973	intron	Shab +	chr3L	2936151	intron	Shab +	chr3L_27_2930001	chr3L_2930001	RAL-850
1596	chr3L	2966686	2966731	chr3L	2974160	2974211	mdg1	6	7477	8.5	4.0	6.2	0.8	7525	chr3L	2966686	intergenic	not near genes	chr3L	2970448	intergenic	not near genes	chr3L	2974211	intergenic	not near genes	chr3L_6_2970001	chr3L_2970001	RAL-850
1598	chr3L	3040278	3040350	chr3L	3042117	3042189	S-element	21	1838	8.0	4.0	6.0	3.0	1911	chr3L	3040278	3` UTR	CG2162 +	chr3L	3041234	intergenic	not near genes	chr3L	3042189	intergenic	Jafrac2 +	chr3L_21_3040001	chr3L_3040001	RAL-850
1599	chr3L	3051700	3051750	chr3L	3051992	3052045	pogo	13	293	13.5	10.0	11.8	1.0	345	chr3L	3051700	3` UTR	CG32485 +	chr3L	3051872	intergenic	CG32485 +	chr3L	3052045	intergenic	CG32485 +,CG1271 +	chr3L_13_3050001	chr3L_3050001	RAL-850
1600	chr3L	3061252	3061313	chr3L	3069868	3069914	Tirant	16	8614	6.0	4.5	5.2	2.6	8662	chr3L	3061252	intron	CG32486 -	chr3L	3065583	intron	CG32486 -	chr3L	3069914	intron	CG32486 -	chr3L_16_3065001	chr3L_3065001	RAL-850
1605	chr3L	3281404	3281419	chr3L	3281945	3281948	Doc	4	540	26.5	17.0	21.8	0.2	544	chr3L	3281404	intron	CG12017 +	chr3L	3281676	intron	CG12017 +	chr3L	3281948	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	RAL-850
1606	chr3L	3281421	3281449	chr3L	3281940	3281995	Doc	19	535	14.5	16.0	15.2	1.2	574	chr3L	3281421	intron	CG12017 +	chr3L	3281708	intron	CG12017 +	chr3L	3281995	intron	CG12017 +	chr3L_19_3280001	chr3L_3280001	RAL-850
1607	chr3L	3281454	3281468	chr3L	3281934	3282014	Doc	17	533	11.5	12.5	12.0	1.3	560	chr3L	3281454	intron	CG12017 +	chr3L	3281734	intron	CG12017 +	chr3L	3282014	intron	CG12017 +	chr3L_17_3280001	chr3L_3280001	RAL-850
1613	chr3L	3475025	3475085	chr3L	3475520	3475564	jockey	8	490	7.0	8.5	7.8	0.9	539	chr3L	3475025	intron	CG42324 +	chr3L	3475294	intron	CG42324 +	chr3L	3475564	intron	CG42324 +	chr3L_8_3475001	chr3L_3475001	RAL-850
1620	chr3L	3601258	3601322	chr3L	3606619	3606683	copia	21	5360	7.5	9.0	8.2	2.3	5425	chr3L	3601258	intron	Eip63E +	chr3L	3603970	intron	Eip63E +	chr3L	3606683	intron	Eip63E +	chr3L_21_3600001	chr3L_3600001	RAL-850
1627	chr3L	3833738	3833770	chr3L	3834029	3834061	pogo	7	291	7.0	8.0	7.5	0.8	323	chr3L	3833738	intron	enc +	chr3L	3833900	intron	enc +	chr3L	3834061	intron	enc +	chr3L_7_3830001	chr3L_3830001	RAL-850
1641	chr3L	4328695	4328753	chr3L	4336243	4336301	412	23	7548	6.0	9.0	7.5	2.7	7606	chr3L	4328695	intron	Cip4 -	chr3L	4332498	intron	Cip4 -	chr3L	4336301	exon	Cip4 -	chr3L_23_4330001	chr3L_4330001	RAL-850
1649	chr3L	4901089	4901146	chr3L	4907329	4907386	diver	17	6239	11.0	12.5	11.8	1.3	6297	chr3L	4901089	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907386	intergenic	not near genes	chr3L_17_4900001	chr3L_4900001	RAL-850
1653	chr3L	5034116	5034184	chr3L	5043318	5043386	roo	20	9202	5.0	6.5	5.8	2.9	9270	chr3L	5034116	intron	Con -	chr3L	5038751	intron	Con -	chr3L	5043386	intron	Con -	chr3L_20_5035001	chr3L_5035001	RAL-850
1654	chr3L	5045410	5045476	chr3L	5050241	5050307	Doc	13	4831	10.0	8.0	9.0	1.3	4897	chr3L	5045410	5` UTR	Con -	chr3L	5047858	intron	Con -	chr3L	5050307	intron	Con -	chr3L_13_5045001	chr3L_5045001	RAL-850
1661	chr3L	5299124	5299174	chr3L	5306600	5306650	Quasimodo	4	7476	2.5	0.0	1.2	1.8	7526	chr3L	5299124	intergenic	not near genes	chr3L	5302887	intergenic	not near genes	chr3L	5306650	intergenic	not near genes	chr3L_4_5300001	chr3L_5300001	RAL-850
1666	chr3L	5458065	5458092	chr3L	5466716	5466716	Max-element	8	8648	5.5	14.0	9.8	0.7	8651	chr3L	5458065	intergenic	not near genes	chr3L	5462390	intergenic	not near genes	chr3L	5466716	intergenic	not near genes	chr3L_8_5460001	chr3L_5460001	RAL-850
1670	chr3L	5537687	5537744	chr3L	5538079	5538136	jockey	29	391	9.0	13.0	11.0	2.4	449	chr3L	5537687	intergenic	not near genes	chr3L	5537912	intergenic	CG10625 -	chr3L	5538136	intergenic	CG10625 -	chr3L_29_5535001	chr3L_5535001	RAL-850
1675	chr3L	5909991	5910057	chr3L	5910282	5910348	pogo	38	291	11.0	9.5	10.2	3.4	357	chr3L	5909991	intron	CG13288 +	chr3L	5910170	intron	CG13288 +	chr3L	5910348	intron	CG13288 +	chr3L_38_5910001	chr3L_5910001	RAL-850
1676	chr3L	5926271	5926342	chr3L	5926511	5926584	BS	19	231	8.0	8.0	8.0	2.1	313	chr3L	5926271	intron	Vap-33B +	chr3L	5926428	intron	Vap-33B +	chr3L	5926584	intron	Vap-33B +	chr3L_19_5925001	chr3L_5925001	RAL-850
1679	chr3L	6001639	6001717	chr3L	6004389	6004467	jockey	18	2750	5.0	0.0	2.5	5.1	2828	chr3L	6001639	intron	PVRAP +	chr3L	6003053	intron	PVRAP +	chr3L	6004467	intron	PVRAP +	chr3L_18_6000001	chr3L_6000001	RAL-850
1680	chr3L	6040316	6040374	chr3L	6042722	6042780	Doc	24	2405	10.5	8.0	9.2	2.4	2464	chr3L	6040316	intergenic	Jon65Aiv +	chr3L	6041548	intergenic	not near genes	chr3L	6042780	intergenic	not near genes	chr3L_24_6040001	chr3L_6040001	RAL-850
1687	chr3L	6220875	6220935	chr3L	6230077	6230137	roo	33	9201	8.5	8.5	8.5	3.5	9262	chr3L	6220875	5` UTR	pncr008:3L +	chr3L	6225506	intergenic	not near genes	chr3L	6230137	intergenic	not near genes	chr3L_33_6225001	chr3L_6225001	RAL-850
1688	chr3L	6220936	6220941	chr3L	6230068	6230143	roo	4	9184	7.5	7.5	7.5	0.5	9207	chr3L	6220936	5` UTR	pncr008:3L +	chr3L	6225540	intergenic	not near genes	chr3L	6230143	intergenic	not near genes	chr3L_4_6225001	chr3L_6225001	RAL-850
1690	chr3L	6334966	6335029	chr3L	6335487	6335550	297	28	517	9.5	9.0	9.2	2.7	584	chr3L	6334966	intron	CG13300 -	chr3L	6335258	intron	CG13300 -	chr3L	6335550	intron	CG13300 -	chr3L_28_6335001	chr3L_6335001	RAL-850
1692	chr3L	6405619	6405678	chr3L	6432133	6432192	roo	16	26514	9.5	7.0	8.2	1.7	26573	chr3L	6405619	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432192	intron	CG42747 +	chr3L_16_6415001	chr3L_6415001	RAL-850
1700	chr3L	6620563	6620602	chr3L	6621053	6621066	Rt1c	23	487	5.0	21.0	13.0	1.6	503	chr3L	6620563	intergenic	not near genes	chr3L	6620814	intergenic	not near genes	chr3L	6621066	intergenic	not near genes	chr3L_23_6620001	chr3L_6620001	RAL-850
1704	chr3L	6781077	6781152	chr3L	6783140	6783212	Doc	12	2060	5.0	0.0	2.5	3.4	2135	chr3L	6781077	intergenic	not near genes	chr3L	6782144	intergenic	not near genes	chr3L	6783212	intergenic	not near genes	chr3L_12_6780001	chr3L_6780001	RAL-850
1709	chr3L	6855885	6855946	chr3L	6860719	6860780	Doc	26	4829	4.5	11.0	7.8	3.0	4895	chr3L	6855885	intergenic	not near genes	chr3L	6858332	intergenic	not near genes	chr3L	6860780	intergenic	not near genes	chr3L_26_6855001	chr3L_6855001	RAL-850
1711	chr3L	6887476	6887537	chr3L	6895018	6895079	roo	21	7541	8.0	8.0	8.0	2.3	7603	chr3L	6887476	intergenic	not near genes	chr3L	6891278	intergenic	not near genes	chr3L	6895079	intergenic	not near genes	chr3L_21_6890001	chr3L_6890001	RAL-850
1717	chr3L	6994846	6994914	chr3L	6995497	6995574	BS	6	656	1.5	3.5	2.5	1.7	728	chr3L	6994846	intergenic	bin +	chr3L	6995210	intergenic	not near genes	chr3L	6995574	intergenic	not near genes	chr3L_6_6995001	chr3L_6995001	RAL-850
1725	chr3L	7129912	7129977	chr3L	7130154	7130218	BS	14	242	0.5	10.5	5.5	2.2	306	chr3L	7129912	intergenic	CG15829 +	chr3L	7130065	intergenic	CG15829 +	chr3L	7130218	intergenic	not near genes	chr3L_14_7130001	chr3L_7130001	RAL-850
1736	chr3L	7377271	7377341	chr3L	7380425	7380496	297	37	3155	6.5	15.5	11.0	3.1	3225	chr3L	7377271	intron	SMSr -	chr3L	7378884	intron	SMSr -	chr3L	7380496	intron	SMSr -	chr3L_37_7375001	chr3L_7375001	RAL-850
1743	chr3L	7498699	7498746	chr3L	7503555	7503602	F-element	15	4856	6.5	9.0	7.8	1.7	4903	chr3L	7498699	5` UTR	CG8539 -	chr3L	7501150	intergenic	not near genes	chr3L	7503602	intergenic	not near genes	chr3L_15_7500001	chr3L_7500001	RAL-850
1756	chr3L	7793670	7793734	chr3L	7800772	7800836	297	30	7102	11.0	11.0	11.0	2.5	7166	chr3L	7793670	intron	CG32369 -	chr3L	7797253	intron	CG32369 -	chr3L	7800836	intron	CG32369 -	chr3L_30_7795001	chr3L_7795001	RAL-850
1759	chr3L	7886457	7886527	chr3L	7889029	7889095	Stalker4	16	2569	2.0	6.0	4.0	3.2	2638	chr3L	7886457	intron	CG32365 +	chr3L	7887776	intron	CG32365 +	chr3L	7889095	intron	CG32365 +	chr3L_16_7885001	chr3L_7885001	RAL-850
1760	chr3L	7916785	7916853	chr3L	7926006	7926074	roo	19	9221	8.5	10.5	9.5	1.8	9289	chr3L	7916785	3` UTR	syd -	chr3L	7921430	intron	syd -	chr3L	7926074	3` UTR	syd -	chr3L_19_7920001	chr3L_7920001	RAL-850
1762	chr3L	7985332	7985387	chr3L	7987700	7987765	NOF	19	2377	8.5	8.0	8.2	2.1	2433	chr3L	7985332	intron	nmo +	chr3L	7986548	intron	nmo +	chr3L	7987765	intron	nmo +	chr3L_19_7985001	chr3L_7985001	RAL-850
1771	chr3L	8233543	8233583	chr3L	8238853	8238895	Rt1a	26	5310	7.5	14.5	11.0	2.2	5352	chr3L	8233543	intron	CG7213 -	chr3L	8236219	intron	CG7213 -	chr3L	8238895	intron,intron	CG7213 -,Dscam4 +	chr3L_26_8235001	chr3L_8235001	RAL-850
1776	chr3L	8481739	8481798	chr3L	8490933	8491007	roo	19	9190	15.5	6.5	11.0	1.6	9268	chr3L	8481739	intron	CG43163 -	chr3L	8486373	intron	CG43163 -	chr3L	8491007	intron	CG43163 -	chr3L_19_8485001	chr3L_8485001	RAL-850
1777	chr3L	8498258	8498321	chr3L	8505775	8505838	blood	27	7517	6.0	7.0	6.5	3.6	7580	chr3L	8498258	intron	CG43163 -	chr3L	8502048	intron	CG43163 -	chr3L	8505838	intron	CG43163 -	chr3L_27_8500001	chr3L_8500001	RAL-850
1779	chr3L	8791231	8791304	chr3L	8796701	8796773	I-element	21	5467	10.5	0.0	5.2	3.4	5542	chr3L	8791231	exon	Fhos +	chr3L	8794002	intron	Fhos +	chr3L	8796773	intron	Fhos +	chr3L_21_8790001	chr3L_8790001	RAL-850
1788	chr3L	9076889	9076945	chr3L	9084499	9084555	412	26	7607	12.5	10.5	11.5	2.1	7666	chr3L	9076889	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084555	exon	Tequila +	chr3L_26_9080001	chr3L_9080001	RAL-850
1790	chr3L	9130510	9130533	chr3L	9134321	9134344	412	8	3811	19.5	8.5	14.0	0.5	3834	chr3L	9130510	intergenic	bol -	chr3L	9132427	intergenic	not near genes	chr3L	9134344	intergenic	Dhpr +	chr3L_8_9130001	chr3L_9130001	RAL-850
1791	chr3L	9130548	9130577	chr3L	9134320	9134388	412	13	3802	9.5	8.5	9.0	1.3	3840	chr3L	9130548	intergenic	bol -	chr3L	9132468	intergenic	not near genes	chr3L	9134388	intergenic	Dhpr +	chr3L_13_9130001	chr3L_9130001	RAL-850
1793	chr3L	9164656	9164677	chr3L	9166173	9166194	hobo	9	1517	14.0	0.5	7.2	1.1	1538	chr3L	9164656	intron	Rdl -	chr3L	9165425	intron	Rdl -	chr3L	9166194	intron	Rdl -	chr3L_9_9165001	chr3L_9165001	RAL-850
1794	chr3L	9219216	9219221	chr3L	9219924	9219943	jockey	4	718	20.0	14.0	17.0	0.2	727	chr3L	9219216	intergenic	not near genes	chr3L	9219580	intergenic	not near genes	chr3L	9219943	intergenic	not near genes	chr3L_4_9215001	chr3L_9215001	RAL-850
1795	chr3L	9219222	9219225	chr3L	9219923	9219947	jockey	7	715	20.0	13.0	16.5	0.4	725	chr3L	9219222	intergenic	not near genes	chr3L	9219584	intergenic	not near genes	chr3L	9219947	intergenic	not near genes	chr3L_7_9215001	chr3L_9215001	RAL-850
1796	chr3L	9219234	9219246	chr3L	9219932	9219968	jockey	9	712	14.5	15.5	15.0	0.6	734	chr3L	9219234	intergenic	not near genes	chr3L	9219601	intergenic	not near genes	chr3L	9219968	intergenic	not near genes	chr3L_9_9215001	chr3L_9215001	RAL-850
1797	chr3L	9219249	9219274	chr3L	9219929	9219942	jockey	10	700	7.0	15.5	11.2	0.8	693	chr3L	9219249	intergenic	not near genes	chr3L	9219596	intergenic	not near genes	chr3L	9219942	intergenic	not near genes	chr3L_10_9215001	chr3L_9215001	RAL-850
1798	chr3L	9270578	9270648	chr3L	9278382	9278402	roo	20	7795	5.5	14.0	9.8	1.9	7824	chr3L	9270578	intron	GluRIB +	chr3L	9274490	intron	GluRIB +	chr3L	9278402	exon	GluRIB +	chr3L_20_9270001	chr3L_9270001	RAL-850
1803	chr3L	9443490	9443521	chr3L	9445327	9445358	S-element	16	1837	5.5	11.0	8.2	1.7	1868	chr3L	9443490	intron	CG33926 +	chr3L	9444424	intron	CG33926 +	chr3L	9445358	intron	CG33926 +	chr3L_16_9440001	chr3L_9440001	RAL-850
1804	chr3L	9443525	9443535	chr3L	9445298	9445363	S-element	4	1819	4.0	7.0	5.5	0.6	1838	chr3L	9443525	intron	CG33926 +	chr3L	9444444	intron	CG33926 +	chr3L	9445363	intron	CG33926 +	chr3L_4_9440001	chr3L_9440001	RAL-850
1805	chr3L	9501685	9501734	chr3L	9502218	9502267	roo	18	533	3.0	7.0	5.0	3.0	582	chr3L	9501685	intron	path -	chr3L	9501976	intron	path -	chr3L	9502267	intron	path -	chr3L_18_9500001	chr3L_9500001	RAL-850
1809	chr3L	9533733	9533776	chr3L	9541319	9541355	412	13	7593	9.0	14.0	11.5	1.0	7622	chr3L	9533733	intergenic	not near genes	chr3L	9537544	intergenic	not near genes	chr3L	9541355	intergenic	not near genes	chr3L_13_9535001	chr3L_9535001	RAL-850
1810	chr3L	9571869	9571932	chr3L	9572267	9572330	jockey	20	398	9.5	0.0	4.8	3.4	461	chr3L	9571869	intron	CG42673 +	chr3L	9572100	intron	CG42673 +	chr3L	9572330	intron	CG42673 +	chr3L_20_9570001	chr3L_9570001	RAL-850
1812	chr3L	9575868	9575928	chr3L	9580996	9581046	jockey	18	5127	8.0	8.0	8.0	2.0	5178	chr3L	9575868	intron	CG42673 +	chr3L	9578457	intron	CG42673 +	chr3L	9581046	intron	CG42673 +	chr3L_18_9575001	chr3L_9575001	RAL-850
1825	chr3L	9929624	9929690	chr3L	9938455	9938515	roo	27	8829	8.5	9.0	8.8	2.8	8891	chr3L	9929624	intron	CG34356 +	chr3L	9934070	intron	CG34356 +	chr3L	9938515	intron	CG34356 +	chr3L_27_9930001	chr3L_9930001	RAL-850
1836	chr3L	10060083	10060114	chr3L	10067695	10067743	17.6	15	7626	16.5	7.5	12.0	1.2	7660	chr3L	10060083	intron	dpr6 +	chr3L	10063913	intron	dpr6 +	chr3L	10067743	intron	dpr6 +	chr3L_15_10060001	chr3L_10060001	RAL-850
1854	chr3L	10414900	10414959	chr3L	10417309	10417381	Doc	22	2419	8.0	9.0	8.5	2.3	2481	chr3L	10414900	intergenic	CG12362 +	chr3L	10416140	intergenic	not near genes	chr3L	10417381	intergenic	not near genes	chr3L_22_10415001	chr3L_10415001	RAL-850
1892	chr3L	11087012	11087087	chr3L	11088850	11088923	S-element	25	1834	4.0	8.5	6.2	3.5	1911	chr3L	11087012	intron	JIL-1 -	chr3L	11087968	intron	JIL-1 -	chr3L	11088923	intron	JIL-1 -	chr3L_25_11085001	chr3L_11085001	RAL-850
1894	chr3L	11105249	11105324	chr3L	11107010	11107085	X-element	30	1760	5.0	6.0	5.5	4.6	1836	chr3L	11105249	intergenic	not near genes	chr3L	11106167	intergenic	not near genes	chr3L	11107085	exon	CG32073 -	chr3L_30_11105001	chr3L_11105001	RAL-850
1903	chr3L	11264421	11264485	chr3L	11271423	11271487	17.6	11	7000	8.5	5.0	6.8	1.4	7066	chr3L	11264421	intergenic	not near genes	chr3L	11267954	intergenic	not near genes	chr3L	11271487	intergenic	not near genes	chr3L_11_11265001	chr3L_11265001	RAL-850
1904	chr3L	11277404	11277471	chr3L	11278455	11278516	Rt1a	13	1043	3.0	10.5	6.8	1.7	1112	chr3L	11277404	intergenic	not near genes	chr3L	11277960	intergenic	not near genes	chr3L	11278516	intergenic	not near genes	chr3L_13_11275001	chr3L_11275001	RAL-850
1907	chr3L	11329655	11329720	chr3L	11332905	11332935	jockey	16	3248	11.5	9.0	10.2	1.4	3280	chr3L	11329655	intergenic	not near genes	chr3L	11331295	intergenic	not near genes	chr3L	11332935	intergenic	not near genes	chr3L_16_11330001	chr3L_11330001	RAL-850
1919	chr3L	11723046	11723109	chr3L	11727891	11727954	Doc	28	4845	6.5	16.0	11.2	2.3	4908	chr3L	11723046	3` UTR	Bmcp +	chr3L	11725500	intron	Bmcp +	chr3L	11727954	3` UTR	Bmcp +	chr3L_28_11725001	chr3L_11725001	RAL-850
1928	chr3L	11864503	11864578	chr3L	11865848	11865923	pogo	27	1344	3.0	7.0	5.0	4.5	1420	chr3L	11864503	intron	CG44837 -	chr3L	11865213	intron	CG44837 -	chr3L	11865923	intron	CG44837 -	chr3L_27_11865001	chr3L_11865001	RAL-850
1978	chr3L	12874876	12874949	chr3L	12877218	12877291	jockey	27	2339	8.5	7.5	8.0	3.0	2415	chr3L	12874876	intergenic	not near genes	chr3L	12876084	intergenic	not near genes	chr3L	12877291	intergenic	not near genes	chr3L_27_12875001	chr3L_12875001	RAL-850
1982	chr3L	12919256	12919309	chr3L	12924749	12924836	Rt1c	12	5508	8.0	4.5	6.2	1.7	5580	chr3L	12919256	intergenic	not near genes	chr3L	12922046	intergenic	not near genes	chr3L	12924836	intergenic	not near genes	chr3L_12_12920001	chr3L_12920001	RAL-850
1983	chr3L	12957737	12957812	chr3L	12962269	12962344	copia	16	4531	5.0	7.0	6.0	2.3	4607	chr3L	12957737	intergenic	not near genes	chr3L	12960040	intergenic	not near genes	chr3L	12962344	intergenic	not near genes	chr3L_16_12960001	chr3L_12960001	RAL-850
2007	chr3L	13525114	13525181	chr3L	13532960	13532996	roo	40	7844	14.0	12.0	13.0	2.9	7882	chr3L	13525114	intergenic	not near genes	chr3L	13529055	intergenic	not near genes	chr3L	13532996	intergenic	not near genes	chr3L_40_13525001	chr3L_13525001	RAL-850
2008	chr3L	13574578	13574620	chr3L	13580138	13580170	Rt1c	8	5551	12.0	8.0	10.0	0.7	5592	chr3L	13574578	intron	bru-3 -	chr3L	13577374	intron	bru-3 -	chr3L	13580170	intron	bru-3 -	chr3L_8_13575001	chr3L_13575001	RAL-850
2013	chr3L	13804502	13804574	chr3L	13822838	13822883	roo	34	18334	8.5	7.5	8.0	3.8	18381	chr3L	13804502	intergenic	not near genes	chr3L	13813692	intergenic	not near genes	chr3L	13822883	intergenic	not near genes	chr3L_34_13810001	chr3L_13810001	RAL-850
2038	chr3L	14267329	14267355	chr3L	14271819	14271845	F-element	10	4488	16.5	0.0	8.2	1.1	4516	chr3L	14267329	intergenic	not near genes	chr3L	14269587	intergenic	not near genes	chr3L	14271845	intergenic	not near genes	chr3L_10_14265001	chr3L_14265001	RAL-850
2039	chr3L	14267392	14267404	chr3L	14271898	14271910	F-element	5	4506	7.5	7.0	7.2	0.6	4518	chr3L	14267392	intergenic	not near genes	chr3L	14269651	intergenic	not near genes	chr3L	14271910	intergenic	not near genes	chr3L_5_14265001	chr3L_14265001	RAL-850
2042	chr3L	14295937	14296006	chr3L	14296473	14296542	roo	28	534	9.0	11.0	10.0	2.5	605	chr3L	14295937	intron	fz +	chr3L	14296240	intron	fz +	chr3L	14296542	intron	fz +	chr3L_28_14295001	chr3L_14295001	RAL-850
2044	chr3L	14312011	14312055	chr3L	14316839	14316888	X-element	14	4834	4.5	6.5	5.5	2.2	4877	chr3L	14312011	exon	fz +	chr3L	14314450	intron	fz +	chr3L	14316888	intron	fz +	chr3L_14_14310001	chr3L_14310001	RAL-850
2058	chr3L	14468409	14468466	chr3L	14473665	14473722	copia	22	5256	8.0	5.0	6.5	2.9	5313	chr3L	14468409	intron	bbg -	chr3L	14471066	intron	bbg -	chr3L	14473722	intron	bbg -	chr3L_22_14470001	chr3L_14470001	RAL-850
2070	chr3L	14721140	14721190	chr3L	14723028	14723061	Rt1c	22	1890	10.5	9.5	10.0	2.0	1921	chr3L	14721140	intron	ome +	chr3L	14722100	intron	ome +	chr3L	14723061	intron	ome +	chr3L_22_14720001	chr3L_14720001	RAL-850
2071	chr3L	14721191	14721202	chr3L	14723023	14723095	Rt1c	6	1878	9.0	8.0	8.5	0.6	1904	chr3L	14721191	intron	ome +	chr3L	14722143	intron	ome +	chr3L	14723095	intron	ome +	chr3L_6_14720001	chr3L_14720001	RAL-850
2072	chr3L	14725569	14725619	chr3L	14728613	14728633	Doc	12	3042	5.0	9.0	7.0	1.5	3064	chr3L	14725569	intron	ome +	chr3L	14727101	intron	ome +	chr3L	14728633	intron	ome +	chr3L_12_14725001	chr3L_14725001	RAL-850
2079	chr3L	14970722	14970757	chr3L	14971082	14971117	F-element	10	360	4.0	5.5	4.8	1.7	395	chr3L	14970722	intergenic	Tom +	chr3L	14970920	intergenic	not near genes	chr3L	14971117	intergenic	not near genes	chr3L_10_14970001	chr3L_14970001	RAL-850
2082	chr3L	15085008	15085019	chr3L	15086224	15086227	1360	7	1215	12.5	11.5	12.0	0.5	1219	chr3L	15085008	intron	cp309 -	chr3L	15085618	intron	cp309 -	chr3L	15086227	intron	cp309 -	chr3L_7_15085001	chr3L_15085001	RAL-850
2083	chr3L	15085020	15085078	chr3L	15086221	15086294	1360	14	1209	4.5	11.0	7.8	1.6	1274	chr3L	15085020	intron	cp309 -	chr3L	15085657	intron	cp309 -	chr3L	15086294	intron	cp309 -	chr3L_14_15085001	chr3L_15085001	RAL-850
2093	chr3L	15295729	15295791	chr3L	15298622	15298684	gypsy5	22	2891	11.0	4.5	7.8	2.5	2955	chr3L	15295729	intergenic	not near genes	chr3L	15297206	intergenic	not near genes	chr3L	15298684	intergenic	Best4 +	chr3L_22_15295001	chr3L_15295001	RAL-850
2099	chr3L	15423715	15423782	chr3L	15426609	15426676	opus	25	2893	10.5	4.0	7.2	3.0	2961	chr3L	15423715	intergenic	not near genes	chr3L	15425196	intergenic	not near genes	chr3L	15426676	intergenic	not near genes	chr3L_25_15425001	chr3L_15425001	RAL-850
2118	chr3L	15899212	15899246	chr3L	15899797	15899851	jockey	12	597	9.0	7.0	8.0	1.3	639	chr3L	15899212	intergenic	pHCl -	chr3L	15899532	intergenic	not near genes	chr3L	15899851	intergenic	sff -	chr3L_12_15895001	chr3L_15895001	RAL-850
2120	chr3L	15929149	15929218	chr3L	15938346	15938415	roo	31	9197	9.0	5.5	7.2	3.8	9266	chr3L	15929149	intron	Pka-C3 -	chr3L	15933782	intron	Pka-C3 -	chr3L	15938415	intron	Pka-C3 -	chr3L_31_15930001	chr3L_15930001	RAL-850
2139	chr3L	16443799	16443876	chr3L	16446189	16446266	Doc	36	2390	8.5	12.0	10.2	3.2	2467	chr3L	16443799	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446266	intron,intron	CG33158 +,dsx-c73A -	chr3L_36_16445001	chr3L_16445001	RAL-850
2142	chr3L	16493937	16494002	chr3L	16494504	16494564	jockey	35	566	12.5	16.0	14.2	2.3	627	chr3L	16493937	intron,exon,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494250	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494564	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_35_16490001	chr3L_16490001	RAL-850
2149	chr3L	16616468	16616536	chr3L	16621846	16621914	297	14	5376	6.0	8.0	7.0	1.8	5446	chr3L	16616468	3` UTR	Abl -	chr3L	16619191	3` UTR	Abl -	chr3L	16621914	3` UTR	Abl -	chr3L_14_16615001	chr3L_16615001	RAL-850
2152	chr3L	16684002	16684038	chr3L	16689273	16689309	copia	5	5271	2.5	13.5	8.0	0.6	5307	chr3L	16684002	intron,intron	Lasp -,CG43954 -	chr3L	16686656	intron,intron	Lasp -,CG43954 -	chr3L	16689309	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_5_16685001	chr3L_16685001	RAL-850
2164	chr3L	16945695	16945745	chr3L	16954887	16954912	roo	15	9194	18.0	12.0	15.0	0.9	9217	chr3L	16945695	exon	Obp73a +	chr3L	16950304	intergenic	not near genes	chr3L	16954912	5` UTR	Nc73EF +	chr3L_15_16950001	chr3L_16950001	RAL-850
2165	chr3L	16945747	16945753	chr3L	16954882	16954950	roo	7	9176	16.0	9.5	12.8	0.5	9203	chr3L	16945747	exon	Obp73a +	chr3L	16950348	intergenic	not near genes	chr3L	16954950	5` UTR	Nc73EF +	chr3L_7_16950001	chr3L_16950001	RAL-850
2168	chr3L	17034888	17034951	chr3L	17035121	17035189	G2	11	237	6.5	8.5	7.5	1.3	301	chr3L	17034888	intergenic	not near genes	chr3L	17035038	intergenic	not near genes	chr3L	17035189	intergenic	beg +	chr3L_11_17035001	chr3L_17035001	RAL-850
2170	chr3L	17084960	17085029	chr3L	17094158	17094228	roo	24	9199	9.0	10.0	9.5	2.3	9268	chr3L	17084960	intron	Rbp6 -	chr3L	17089594	intron	Rbp6 -	chr3L	17094228	intron	Rbp6 -	chr3L_24_17085001	chr3L_17085001	RAL-850
2179	chr3L	17516933	17517007	chr3L	17524540	17524589	412	31	7605	8.0	8.5	8.2	3.4	7656	chr3L	17516933	intron	CG7564 +	chr3L	17520761	intron	CG7564 +	chr3L	17524589	3` UTR	CG7564 +	chr3L_31_17520001	chr3L_17520001	RAL-850
2187	chr3L	17730803	17730873	chr3L	17738184	17738253	mdg1	15	7381	5.5	11.0	8.2	1.6	7450	chr3L	17730803	intron	Ccn +	chr3L	17734528	intron	Ccn +	chr3L	17738253	intron	Ccn +	chr3L_15_17730001	chr3L_17730001	RAL-850
2198	chr3L	17799765	17799835	chr3L	17801602	17801669	S-element	24	1836	9.0	10.0	9.5	2.3	1904	chr3L	17799765	intron	NUCB1 -	chr3L	17800717	intron	NUCB1 -	chr3L	17801669	intron	NUCB1 -	chr3L_24_17800001	chr3L_17800001	RAL-850
2203	chr3L	17918335	17918390	chr3L	17921188	17921243	opus	15	2853	2.0	8.5	5.2	2.4	2908	chr3L	17918335	intergenic	not near genes	chr3L	17919789	intergenic	not near genes	chr3L	17921243	intergenic	not near genes	chr3L_15_17915001	chr3L_17915001	RAL-850
2213	chr3L	18047666	18047729	chr3L	18056772	18056835	roo	26	9106	7.0	7.0	7.0	3.2	9169	chr3L	18047666	intron	Eip75B -	chr3L	18052250	intron	Eip75B -	chr3L	18056835	intron	Eip75B -	chr3L_26_18050001	chr3L_18050001	RAL-850
2222	chr3L	18189546	18189547	chr3L	18190197	18190198	S-element	4	651	13.0	12.0	12.5	0.3	652	chr3L	18189546	intergenic	not near genes	chr3L	18189872	intergenic	not near genes	chr3L	18190198	intergenic	not near genes	chr3L_4_18185001	chr3L_18185001	RAL-850
2223	chr3L	18189549	18189584	chr3L	18190196	18190235	S-element	16	648	13.0	11.0	12.0	1.2	686	chr3L	18189549	intergenic	not near genes	chr3L	18189892	intergenic	not near genes	chr3L	18190235	intergenic	not near genes	chr3L_16_18185001	chr3L_18185001	RAL-850
2233	chr3L	18506095	18506150	chr3L	18509608	18509663	F-element	20	3513	6.0	7.5	6.8	2.6	3568	chr3L	18506095	intergenic	not near genes	chr3L	18507879	intergenic	not near genes	chr3L	18509663	intergenic	not near genes	chr3L_20_18505001	chr3L_18505001	RAL-850
2234	chr3L	18528592	18528650	chr3L	18537803	18537861	roo	19	9211	8.0	8.0	8.0	2.1	9269	chr3L	18528592	intergenic	not near genes	chr3L	18533226	intergenic	not near genes	chr3L	18537861	intergenic	not near genes	chr3L_19_18530001	chr3L_18530001	RAL-850
2239	chr3L	18593903	18593976	chr3L	18595933	18596009	Doc	18	2030	6.0	4.0	5.0	3.0	2106	chr3L	18593903	intergenic	term -	chr3L	18594956	intergenic	not near genes	chr3L	18596009	intergenic	CR45389 +	chr3L_18_18590001	chr3L_18590001	RAL-850
2243	chr3L	18710745	18710786	chr3L	18718745	18718786	Stalker2	14	8000	8.5	4.0	6.2	1.9	8041	chr3L	18710745	intergenic	not near genes	chr3L	18714766	intergenic	not near genes	chr3L	18718786	intergenic	not near genes	chr3L_14_18710001	chr3L_18710001	RAL-850
2248	chr3L	18772365	18772429	chr3L	18781096	18781160	roo	23	8731	9.0	9.5	9.2	2.3	8795	chr3L	18772365	intron	ftz-f1 -	chr3L	18776762	intron	ftz-f1 -	chr3L	18781160	intron	ftz-f1 -	chr3L_23_18775001	chr3L_18775001	RAL-850
2268	chr3L	19008808	19008867	chr3L	19009186	19009255	jockey	12	381	6.0	10.0	8.0	1.3	447	chr3L	19008808	intron	nkd -	chr3L	19009032	intron	nkd -	chr3L	19009255	intron	nkd -	chr3L_12_19005001	chr3L_19005001	RAL-850
2273	chr3L	19115622	19115650	chr3L	19115833	19115873	BS	11	219	16.5	12.5	14.5	0.7	251	chr3L	19115622	intron	CG14082 -	chr3L	19115748	intron	CG14082 -	chr3L	19115873	intron	CG14082 -	chr3L_11_19115001	chr3L_19115001	RAL-850
2274	chr3L	19115654	19115676	chr3L	19115817	19115851	BS	4	190	11.0	9.0	10.0	0.4	197	chr3L	19115654	intron	CG14082 -	chr3L	19115752	intron	CG14082 -	chr3L	19115851	intron	CG14082 -	chr3L_4_19115001	chr3L_19115001	RAL-850
2275	chr3L	19117004	19117067	chr3L	19124501	19124564	mdg1	27	7494	14.0	11.5	12.8	2.0	7560	chr3L	19117004	intron	CG14082 -	chr3L	19120784	intron	CG14082 -	chr3L	19124564	intron	CG14082 -	chr3L_27_19120001	chr3L_19120001	RAL-850
2279	chr3L	19208012	19208078	chr3L	19209436	19209502	Doc	18	1423	7.0	3.0	5.0	3.0	1490	chr3L	19208012	intron	fz2 -	chr3L	19208757	intron	fz2 -	chr3L	19209502	intron	fz2 -	chr3L_18_19205001	chr3L_19205001	RAL-850
2295	chr3L	19398888	19398931	chr3L	19403655	19403680	F-element	18	4764	7.0	12.5	9.8	1.7	4792	chr3L	19398888	intron	CG32206 -	chr3L	19401284	intron	CG32206 -	chr3L	19403680	intron	CG32206 -	chr3L_18_19400001	chr3L_19400001	RAL-850
2304	chr3L	19820248	19820319	chr3L	19827847	19827918	412	31	7599	5.5	7.0	6.2	4.3	7670	chr3L	19820248	intron	Deaf1 +	chr3L	19824083	intron	Deaf1 +	chr3L	19827918	intron	Deaf1 +	chr3L_31_19820001	chr3L_19820001	RAL-850
2305	chr3L	19848482	19848528	chr3L	19857723	19857769	roo	16	9239	8.5	12.5	10.5	1.4	9287	chr3L	19848482	intron	Papss +	chr3L	19853126	intron	Papss +	chr3L	19857769	intron	Papss +	chr3L_16_19850001	chr3L_19850001	RAL-850
2306	chr3L	19861782	19861842	chr3L	19863620	19863680	S-element	21	1836	9.5	7.5	8.5	2.2	1898	chr3L	19861782	5` UTR	CR45433 +	chr3L	19862731	intergenic	not near genes	chr3L	19863680	intergenic	not near genes	chr3L_21_19860001	chr3L_19860001	RAL-850
2311	chr3L	20113617	20113675	chr3L	20122924	20122982	roo	27	9307	10.0	9.0	9.5	2.6	9365	chr3L	20113617	intergenic	not near genes	chr3L	20118300	intergenic	not near genes	chr3L	20122982	intergenic	not near genes	chr3L_27_20115001	chr3L_20115001	RAL-850
2315	chr3L	20212562	20212580	chr3L	20218189	20218207	mdg3	10	5627	19.0	10.0	14.5	0.6	5645	chr3L	20212562	intergenic	CG7017 -	chr3L	20215384	intergenic	not near genes	chr3L	20218207	intergenic	CG6933 -	chr3L_10_20215001	chr3L_20215001	RAL-850
2323	chr3L	20476714	20476772	chr3L	20484363	20484421	springer	30	7649	9.0	7.5	8.2	3.3	7707	chr3L	20476714	3` UTR	isoQC +	chr3L	20480568	intergenic	not near genes	chr3L	20484421	3` UTR	ZnT77C -	chr3L_30_20480001	chr3L_20480001	RAL-850
2327	chr3L	20590027	20590061	chr3L	20590605	20590634	412	18	581	14.5	3.5	9.0	1.8	607	chr3L	20590027	intergenic	not near genes	chr3L	20590330	intergenic	not near genes	chr3L	20590634	intergenic	not near genes	chr3L_18_20590001	chr3L_20590001	RAL-850
2328	chr3L	20590062	20590096	chr3L	20590601	20590662	412	13	576	7.0	3.5	5.2	2.1	600	chr3L	20590062	intergenic	not near genes	chr3L	20590362	intergenic	not near genes	chr3L	20590662	intergenic	not near genes	chr3L_13_20590001	chr3L_20590001	RAL-850
2338	chr3L	21014884	21014946	chr3L	21023398	21023424	Tirant	30	8506	6.0	9.0	7.5	3.5	8540	chr3L	21014884	intron	skd -	chr3L	21019154	intron	skd -	chr3L	21023424	intron	skd -	chr3L_30_21015001	chr3L_21015001	RAL-850
2342	chr3L	21151823	21151882	chr3L	21156957	21157015	flea	27	5134	9.0	8.5	8.8	2.8	5192	chr3L	21151823	intron	Ac78C -	chr3L	21154419	intron	Ac78C -	chr3L	21157015	intron	Ac78C -	chr3L_27_21150001	chr3L_21150001	RAL-850
2343	chr3L	21306101	21306173	chr3L	21315310	21315382	roo	22	9208	10.0	7.0	8.5	2.3	9281	chr3L	21306101	3` UTR	CG7632 +	chr3L	21310742	intron	Pc -	chr3L	21315382	3` UTR	Pc -	chr3L_22_21310001	chr3L_21310001	RAL-850
2344	chr3L	21361686	21361746	chr3L	21362690	21362750	G2	24	1004	14.5	11.5	13.0	1.7	1064	chr3L	21361686	intergenic	CG32440 +	chr3L	21362218	intergenic	not near genes	chr3L	21362750	intergenic	not near genes	chr3L_24_21360001	chr3L_21360001	RAL-850
2345	chr3L	21372679	21372751	chr3L	21379237	21379308	McClintock	11	6558	3.5	5.0	4.2	2.1	6629	chr3L	21372679	intergenic	not near genes	chr3L	21375994	intergenic	not near genes	chr3L	21379308	intergenic	not near genes	chr3L_11_21375001	chr3L_21375001	RAL-850
2349	chr3L	21498827	21498835	chr3L	21500493	21500521	1360	8	1681	16.5	18.5	17.5	0.4	1694	chr3L	21498827	5` UTR,intron	CR43933 +,Glg1 -	chr3L	21499674	intron	Glg1 -	chr3L	21500521	intron	Glg1 -	chr3L_8_21495001	chr3L_21495001	RAL-850
2350	chr3L	21498839	21498853	chr3L	21500491	21500539	1360	13	1680	12.5	17.0	14.8	0.8	1700	chr3L	21498839	intron	Glg1 -	chr3L	21499689	intron	Glg1 -	chr3L	21500539	intron	Glg1 -	chr3L_13_21495001	chr3L_21495001	RAL-850
2351	chr3L	21501131	21501156	chr3L	21501274	21501300	1360	8	142	9.0	15.0	12.0	0.6	169	chr3L	21501131	intron	Glg1 -	chr3L	21501216	intron	Glg1 -	chr3L	21501300	intron	Glg1 -	chr3L_8_21500001	chr3L_21500001	RAL-850
2352	chr3L	21541629	21541689	chr3L	21541810	21541870	INE-1	25	180	10.0	7.5	8.8	2.6	241	chr3L	21541629	intergenic	VhaM9.7-b +	chr3L	21541750	intergenic	not near genes	chr3L	21541870	intergenic	CG33290 +	chr3L_25_21540001	chr3L_21540001	RAL-850
2353	chr3L	21749295	21749301	chr3L	21754505	21754511	Doc	4	5210	26.0	11.0	18.5	0.2	5216	chr3L	21749295	intron	Syn1 -	chr3L	21751903	intron	Syn1 -	chr3L	21754511	intron	Syn1 -	chr3L_4_21750001	chr3L_21750001	RAL-850
2354	chr3L	21749316	21749319	chr3L	21754501	21754524	Doc	4	5201	21.5	10.0	15.8	0.2	5208	chr3L	21749316	intron	Syn1 -	chr3L	21751920	intron	Syn1 -	chr3L	21754524	intron	Syn1 -	chr3L_4_21750001	chr3L_21750001	RAL-850
2355	chr3L	21749327	21749334	chr3L	21754537	21754543	Doc	5	5210	16.5	16.5	16.5	0.3	5216	chr3L	21749327	intron	Syn1 -	chr3L	21751935	intron	Syn1 -	chr3L	21754543	intron	Syn1 -	chr3L_5_21750001	chr3L_21750001	RAL-850
2366	chr3L	22099634	22099695	chr3L	22105870	22105931	3S18	30	6235	12.0	9.5	10.8	2.5	6297	chr3L	22099634	intergenic	not near genes	chr3L	22102782	intergenic	not near genes	chr3L	22105931	intergenic	not near genes	chr3L_30_22100001	chr3L_22100001	RAL-850
2382	chr3L	22555725	22555744	chr3L	22563245	22563264	blood	12	7519	14.0	4.5	9.2	1.2	7539	chr3L	22555725	intergenic	not near genes	chr3L	22559494	intergenic	not near genes	chr3L	22563264	intergenic	not near genes	chr3L_12_22555001	chr3L_22555001	RAL-850
2383	chr3L	22555749	22555802	chr3L	22563239	22563288	blood	20	7515	5.5	4.5	5.0	3.3	7539	chr3L	22555749	intergenic	not near genes	chr3L	22559518	intergenic	not near genes	chr3L	22563288	intergenic	not near genes	chr3L_20_22555001	chr3L_22555001	RAL-850
2385	chr3L	22577585	22577643	chr3L	22582423	22582461	Doc	17	4831	9.0	14.5	11.8	1.3	4876	chr3L	22577585	intergenic	not near genes	chr3L	22580023	intergenic	not near genes	chr3L	22582461	3` UTR	CG14459 -	chr3L_17_22580001	chr3L_22580001	RAL-850
2386	chr3L	22617153	22617211	chr3L	22624655	22624713	blood	28	7502	7.0	11.5	9.2	2.7	7560	chr3L	22617153	intron	CG14459 -	chr3L	22620933	intron	CG14459 -	chr3L	22624713	intron	CG14459 -	chr3L_28_22620001	chr3L_22620001	RAL-850
2391	chr3L	22761345	22761404	chr3L	22766829	22766888	Ivk	24	5484	11.5	13.0	12.2	1.8	5543	chr3L	22761345	intron	SPoCk +	chr3L	22764116	intron	SPoCk +	chr3L	22766888	intron	SPoCk +	chr3L_24_22760001	chr3L_22760001	RAL-850
2397	chr3L	22865944	22865993	chr3L	22867127	22867176	Doc	22	1183	7.0	10.0	8.5	2.3	1232	chr3L	22865944	exon	CG33170 +	chr3L	22866560	intron	CG33170 +	chr3L	22867176	intron	CG33170 +	chr3L_22_22865001	chr3L_22865001	RAL-850
2408	chr3L	22989822	22989888	chr3L	22996846	22996886	297	31	7023	8.5	0.0	4.2	6.0	7064	chr3L	22989822	intergenic	not near genes	chr3L	22993354	intergenic	not near genes	chr3L	22996886	intergenic	not near genes	chr3L_31_22990001	chr3L_22990001	RAL-850
2413	chr3L	23165890	23165907	chr3L	23173384	23173401	Quasimodo	4	7494	11.0	3.0	7.0	0.5	7511	chr3L	23165890	intergenic	not near genes	chr3L	23169646	intergenic	not near genes	chr3L	23173401	intergenic	not near genes	chr3L_4_23165001	chr3L_23165001	RAL-850
2422	chr3L	23662536	23662553	chr3L	23662728	23662741	INE-1	6	191	15.5	3.0	9.2	0.6	205	chr3L	23662536	intron	AGO3 +	chr3L	23662638	intron	AGO3 +	chr3L	23662741	intron	AGO3 +	chr3L_6_23660001	chr3L_23660001	RAL-850
2423	chr3L	23665485	23665526	chr3L	23665625	23665644	gypsy8	12	138	43.5	33.5	38.5	0.3	159	chr3L	23665485	intron	AGO3 +	chr3L	23665564	intron	AGO3 +	chr3L	23665644	intron	AGO3 +	chr3L_12_23665001	chr3L_23665001	RAL-850
2425	chr3L	23848797	23848837	chr3L	23849671	23849711	R1A1-element	17	871	7.5	9.5	8.5	1.8	914	chr3L	23848797	intron	CG40470 -	chr3L	23849254	intron	CG40470 -	chr3L	23849711	intron	CG40470 -	chr3L_17_23845001	chr3L_23845001	RAL-850
2428	chr3L	24012366	24012439	chr3L	24020757	24020775	roo	15	8386	4.0	6.0	5.0	2.5	8409	chr3L	24012366	intergenic	not near genes	chr3L	24016570	intergenic	not near genes	chr3L	24020775	intergenic	not near genes	chr3L_15_24015001	chr3L_24015001	RAL-850
2429	chr3L	24021231	24021302	chr3L	24022438	24022509	1360	36	1205	11.0	9.0	10.0	3.3	1278	chr3L	24021231	intergenic	not near genes	chr3L	24021870	intergenic	not near genes	chr3L	24022509	intergenic	not near genes	chr3L_36_24020001	chr3L_24020001	RAL-850
2431	chr3L	24168760	24168818	chr3L	24176121	24176126	ZAM	15	7356	18.5	8.0	13.2	1.1	7366	chr3L	24168760	intron	Snap25 +	chr3L	24172443	intron	Snap25 +	chr3L	24176126	intron	Snap25 +	chr3L_15_24170001	chr3L_24170001	RAL-850
2433	chr3L	24791853	24791886	chr3L	24796682	24796715	Doc	7	4829	11.0	7.0	9.0	0.7	4862	chr3L	24791853	intergenic	not near genes	chr3L	24794284	intergenic	not near genes	chr3L	24796715	intergenic	not near genes	chr3L_7_24790001	chr3L_24790001	RAL-850
2437	chr3L	23941237	23941238	chr3L	26882296	26882297	1360	4	2941059	25.5	2.0	13.8	0.3	2941060	chr3L	23941237	intron	CG40470 -	chr3L	25411767	intergenic	not near genes	chr3L	26882297	intergenic	not near genes	chr3L_4_25410001	chr3L_25410001	RAL-850
2438	chr3L	27356066	27356099	chr3L	27357315	27357348	1360	11	1248	8.0	1.5	4.8	1.9	1282	chr3L	27356066	intron	Dbp80 +	chr3L	27356707	intron	Dbp80 +	chr3L	27357348	intron	Dbp80 +	chr3L_11_27355001	chr3L_27355001	RAL-850
2442	chr3L	27980646	27980694	chr3L	27985494	27985542	Doc	16	4848	12.0	6.0	9.0	1.6	4896	chr3L	27980646	intron	CG17514 -	chr3L	27983094	intron	CG17514 -	chr3L	27985542	intron	CG17514 -	chr3L_16_27980001	chr3L_27980001	RAL-850
2446	chr3R	1867057	1867174	chr3R	1954884	1954925	Doc3-element	8	87801	32.5	10.0	21.2	0.4	87868	chr3R	1867057	intron	CG42623 +	chr3R	1910991	intron	CG42623 +	chr3R	1954925	intergenic	not near genes	chr3R_8_1910001	chr3R_1910001	RAL-850
2457	chr3R	4206033	4206097	chr3R	4211648	4211722	mdg3	21	5624	8.0	5.0	6.5	2.8	5689	chr3R	4206033	intron	CG14636 -	chr3R	4208878	intron	CG14636 -	chr3R	4211722	intron	CG14636 -	chr3R_21_4205001	chr3R_4205001	RAL-850
2458	chr3R	4366716	4366782	chr3R	4375149	4375215	roo	23	8433	12.0	8.5	10.2	2.1	8499	chr3R	4366716	3` UTR	CG1090 +	chr3R	4370966	intergenic	not near genes	chr3R	4375215	5` UTR	CR44922 +	chr3R_23_4370001	chr3R_4370001	RAL-850
2459	chr3R	4408381	4408432	chr3R	4412735	4412786	Juan	22	4353	11.5	15.0	13.2	1.5	4405	chr3R	4408381	intron	CG32944 -	chr3R	4410584	intron	CG32944 -	chr3R	4412786	intron	CG32944 -	chr3R_22_4410001	chr3R_4410001	RAL-850
2461	chr3R	4609495	4609568	chr3R	4610709	4610781	1360	32	1213	11.5	14.0	12.8	2.3	1286	chr3R	4609495	intergenic	not near genes	chr3R	4610138	intergenic	not near genes	chr3R	4610781	intergenic	not near genes	chr3R_32_4610001	chr3R_4610001	RAL-850
2466	chr3R	4753204	4753261	chr3R	4757557	4757614	F-element	28	4350	10.0	14.0	12.0	2.2	4410	chr3R	4753204	intron,intron	atms +,CG44098 -	chr3R	4755409	intron,intron	atms +,CG44098 -	chr3R	4757614	intron,exon	atms +,CG44098 -	chr3R_28_4755001	chr3R_4755001	RAL-850
2467	chr3R	4759681	4759740	chr3R	4761228	4761276	hopper2	32	1545	10.0	16.0	13.0	2.3	1595	chr3R	4759681	intron,intron	atms +,CG44098 -	chr3R	4760478	intron,intron	atms +,CG44098 -	chr3R	4761276	intron,intron	atms +,CG44098 -	chr3R_32_4760001	chr3R_4760001	RAL-850
2471	chr3R	4887431	4887505	chr3R	4894858	4894931	rover	27	7421	7.0	10.0	8.5	2.8	7500	chr3R	4887431	intergenic	not near genes	chr3R	4891181	intergenic	not near genes	chr3R	4894931	intergenic	not near genes	chr3R_27_4890001	chr3R_4890001	RAL-850
2476	chr3R	5045799	5045871	chr3R	5052951	5053022	HMS-Beagle	32	7152	13.5	6.0	9.8	3.0	7223	chr3R	5045799	3` UTR	CR43635 -	chr3R	5049410	intergenic	not near genes	chr3R	5053022	intergenic	CR45588 -	chr3R_32_5045001	chr3R_5045001	RAL-850
2477	chr3R	5067939	5068008	chr3R	5073506	5073575	mdg3	27	5566	9.0	12.5	10.8	2.3	5636	chr3R	5067939	intergenic	not near genes	chr3R	5070757	intergenic	not near genes	chr3R	5073575	intergenic	not near genes	chr3R_27_5070001	chr3R_5070001	RAL-850
2487	chr3R	5338354	5338408	chr3R	5343581	5343610	Rt1c	21	5225	16.0	15.5	15.8	1.2	5256	chr3R	5338354	intron	mtd -	chr3R	5340982	intron	mtd -	chr3R	5343610	intron	mtd -	chr3R_21_5340001	chr3R_5340001	RAL-850
2489	chr3R	5445919	5445989	chr3R	5452429	5452498	Burdock	22	6510	6.5	7.0	6.8	2.8	6579	chr3R	5445919	intron	CG14669 +	chr3R	5449208	intron	CG14669 +	chr3R	5452498	intron	CG14669 +	chr3R_22_5445001	chr3R_5445001	RAL-850
2493	chr3R	5745984	5746037	chr3R	5746254	5746328	pogo	18	288	4.5	8.5	6.5	2.4	344	chr3R	5745984	3` UTR	Madm +	chr3R	5746156	3` UTR	Madm +	chr3R	5746328	3` UTR	Madm +	chr3R_18_5745001	chr3R_5745001	RAL-850
2494	chr3R	5746971	5747034	chr3R	5753212	5753275	diver	28	6241	5.5	6.5	6.0	4.0	6304	chr3R	5746971	intergenic	Madm +	chr3R	5750123	intergenic	not near genes	chr3R	5753275	intergenic	CG2091 -	chr3R_28_5750001	chr3R_5750001	RAL-850
2496	chr3R	5809067	5809136	chr3R	5809367	5809436	pogo	30	299	10.5	8.0	9.2	2.9	369	chr3R	5809067	3` UTR	CG11000 +	chr3R	5809252	3` UTR	CG11000 +	chr3R	5809436	3` UTR	CG11000 +	chr3R_30_5805001	chr3R_5805001	RAL-850
2497	chr3R	5822340	5822401	chr3R	5823556	5823618	1360	29	1216	7.5	8.0	7.8	3.3	1278	chr3R	5822340	3` UTR	CG2023 -	chr3R	5822979	3` UTR	CG2023 -	chr3R	5823618	3` UTR	CG2023 -	chr3R_29_5820001	chr3R_5820001	RAL-850
2499	chr3R	5927522	5927584	chr3R	5927799	5927845	pogo	17	285	7.0	11.0	9.0	1.7	323	chr3R	5927522	intron	CG34113 -	chr3R	5927684	intron	CG34113 -	chr3R	5927845	intron	CG34113 -	chr3R_17_5925001	chr3R_5925001	RAL-850
2505	chr3R	6015926	6015960	chr3R	6024455	6024491	Tirant	16	8522	14.5	5.0	9.8	1.5	8565	chr3R	6015926	intergenic	not near genes	chr3R	6020208	intergenic	not near genes	chr3R	6024491	intergenic	not near genes	chr3R_16_6020001	chr3R_6020001	RAL-850
2506	chr3R	6015961	6015994	chr3R	6024444	6024457	Tirant	13	8517	8.5	4.5	6.5	1.7	8496	chr3R	6015961	intergenic	not near genes	chr3R	6020209	intergenic	not near genes	chr3R	6024457	intergenic	not near genes	chr3R_13_6020001	chr3R_6020001	RAL-850
2509	chr3R	6121135	6121175	chr3R	6121370	6121443	BS	19	250	4.5	3.0	3.8	4.0	308	chr3R	6121135	intergenic	not near genes	chr3R	6121289	intergenic	not near genes	chr3R	6121443	intergenic	not near genes	chr3R_19_6120001	chr3R_6120001	RAL-850
2511	chr3R	6158478	6158517	chr3R	6167110	6167130	Tirant	10	8630	18.0	7.5	12.8	0.7	8652	chr3R	6158478	intergenic	not near genes	chr3R	6162804	intergenic	not near genes	chr3R	6167130	intergenic	CG1077 +	chr3R_10_6160001	chr3R_6160001	RAL-850
2512	chr3R	6158521	6158539	chr3R	6167101	6167143	Tirant	13	8610	11.5	7.5	9.5	1.2	8622	chr3R	6158521	intergenic	not near genes	chr3R	6162832	intergenic	not near genes	chr3R	6167143	intergenic	CG1077 +	chr3R_13_6160001	chr3R_6160001	RAL-850
2513	chr3R	6175127	6175197	chr3R	6182449	6182519	HMS-Beagle2	25	7319	6.0	8.0	7.0	3.1	7392	chr3R	6175127	intergenic	Osi1 +	chr3R	6178823	intron	CR45194 +	chr3R	6182519	intergenic	CR45194 +	chr3R_25_6175001	chr3R_6175001	RAL-850
2515	chr3R	6206251	6206306	chr3R	6206513	6206564	BS	25	265	8.5	11.0	9.8	2.3	313	chr3R	6206251	exon	Osi24 +	chr3R	6206408	intron	Osi24 +	chr3R	6206564	intron	Osi24 +	chr3R_25_6205001	chr3R_6205001	RAL-850
2523	chr3R	6509984	6510047	chr3R	6515115	6515178	jockey	20	5129	11.5	10.5	11.0	1.7	5194	chr3R	6509984	intergenic	not near genes	chr3R	6512581	intergenic	not near genes	chr3R	6515178	intergenic	not near genes	chr3R_20_6510001	chr3R_6510001	RAL-850
2533	chr3R	6737451	6737486	chr3R	6739288	6739317	Doc	7	1826	19.0	9.5	14.2	0.5	1866	chr3R	6737451	intron	pb -	chr3R	6738384	intron	pb -	chr3R	6739317	intron	pb -	chr3R_7_6735001	chr3R_6735001	RAL-850
2534	chr3R	6737488	6737531	chr3R	6739285	6739299	Doc	17	1821	5.0	7.0	6.0	2.4	1811	chr3R	6737488	intron	pb -	chr3R	6738394	intron	pb -	chr3R	6739299	intron	pb -	chr3R_17_6735001	chr3R_6735001	RAL-850
2556	chr3R	7436489	7436516	chr3R	7436623	7436650	INE-1	10	134	14.5	5.5	10.0	0.9	161	chr3R	7436489	intergenic	not near genes	chr3R	7436570	intergenic	not near genes	chr3R	7436650	intergenic	not near genes	chr3R_10_7435001	chr3R_7435001	RAL-850
2562	chr3R	7694533	7694606	chr3R	7713644	7713704	invader3	25	19110	7.5	5.5	6.5	3.3	19171	chr3R	7694533	3` UTR	Nlg1 +	chr3R	7704118	intergenic	not near genes	chr3R	7713704	intergenic	not near genes	chr3R_25_7700001	chr3R_7700001	RAL-850
2563	chr3R	7729423	7729489	chr3R	7737411	7737477	Stalker2	25	7987	10.0	11.0	10.5	2.2	8054	chr3R	7729423	intergenic	not near genes	chr3R	7733450	intergenic	not near genes	chr3R	7737477	intergenic	not near genes	chr3R_25_7730001	chr3R_7730001	RAL-850
2568	chr3R	7973285	7973326	chr3R	7974397	7974438	1360	12	1112	10.0	11.0	10.5	1.0	1153	chr3R	7973285	intergenic	not near genes	chr3R	7973862	intergenic	not near genes	chr3R	7974438	3` UTR	CD98hc -	chr3R_12_7970001	chr3R_7970001	RAL-850
2573	chr3R	8090515	8090558	chr3R	8094042	8094085	297	14	3526	8.5	13.0	10.8	1.2	3570	chr3R	8090515	intergenic	CR44330 +	chr3R	8092300	intergenic	not near genes	chr3R	8094085	intergenic	CG7900 +	chr3R_14_8090001	chr3R_8090001	RAL-850
2574	chr3R	8094365	8094423	chr3R	8099720	8099778	Transpac	22	5355	9.0	5.5	7.2	2.7	5413	chr3R	8094365	intron	CG7900 +	chr3R	8097072	intron	CG7900 +	chr3R	8099778	intron	CG7900 +	chr3R_22_8095001	chr3R_8095001	RAL-850
2575	chr3R	8101718	8101785	chr3R	8104851	8104914	G2	20	3132	6.0	6.5	6.2	2.8	3196	chr3R	8101718	exon	CG7900 +	chr3R	8103316	intron	CG7900 +	chr3R	8104914	3` UTR	CG7900 +	chr3R_20_8100001	chr3R_8100001	RAL-850
2577	chr3R	8207510	8207521	chr3R	8208406	8208416	F-element	5	895	21.5	8.0	14.8	0.3	906	chr3R	8207510	intergenic	not near genes	chr3R	8207963	intergenic	not near genes	chr3R	8208416	intergenic	not near genes	chr3R_5_8205001	chr3R_8205001	RAL-850
2578	chr3R	8207531	8207581	chr3R	8208401	8208476	F-element	21	890	6.0	5.5	5.8	3.1	945	chr3R	8207531	intergenic	not near genes	chr3R	8208004	intergenic	not near genes	chr3R	8208476	intergenic	not near genes	chr3R_21_8205001	chr3R_8205001	RAL-850
2582	chr3R	8402968	8402973	chr3R	8412184	8412189	roo	4	9216	25.0	7.0	16.0	0.2	9221	chr3R	8402968	intron	CG45263 -	chr3R	8407578	intron	CG45263 -	chr3R	8412189	intron	CG45263 -	chr3R_4_8405001	chr3R_8405001	RAL-850
2583	chr3R	8402975	8403029	chr3R	8412181	8412234	roo	30	9209	10.0	7.0	8.5	3.2	9259	chr3R	8402975	intron	CG45263 -	chr3R	8407604	intron	CG45263 -	chr3R	8412234	intron	CG45263 -	chr3R_30_8405001	chr3R_8405001	RAL-850
2590	chr3R	8570438	8570504	chr3R	8575124	8575180	HMS-Beagle	24	4682	12.0	10.0	11.0	2.0	4742	chr3R	8570438	intergenic	not near genes	chr3R	8572809	intergenic	not near genes	chr3R	8575180	intergenic	not near genes	chr3R_24_8570001	chr3R_8570001	RAL-850
2591	chr3R	8601732	8601765	chr3R	8610935	8610968	roo	16	9202	14.5	9.0	11.8	1.2	9236	chr3R	8601732	intron	5-HT2B +	chr3R	8606350	intron	5-HT2B +	chr3R	8610968	intron	5-HT2B +	chr3R_16_8605001	chr3R_8605001	RAL-850
2592	chr3R	8601767	8601794	chr3R	8610932	8610997	roo	8	9194	6.0	8.5	7.2	1.0	9230	chr3R	8601767	intron	5-HT2B +	chr3R	8606382	intron	5-HT2B +	chr3R	8610997	intron	5-HT2B +	chr3R_8_8605001	chr3R_8605001	RAL-850
2594	chr3R	8707314	8707370	chr3R	8709799	8709861	jockey	23	2490	15.0	9.5	12.2	1.7	2547	chr3R	8707314	intergenic	not near genes	chr3R	8708588	intergenic	not near genes	chr3R	8709861	intergenic	not near genes	chr3R_23_8705001	chr3R_8705001	RAL-850
2598	chr3R	8898183	8898213	chr3R	8913813	8913845	297	9	15625	15.5	7.0	11.2	0.7	15662	chr3R	8898183	intron	pyd -	chr3R	8906014	intron	pyd -	chr3R	8913845	intron	pyd -	chr3R_9_8905001	chr3R_8905001	RAL-850
2609	chr3R	9319535	9319599	chr3R	9320020	9320079	jockey	36	484	9.5	12.0	10.8	3.1	544	chr3R	9319535	intron	CG8861 -	chr3R	9319807	intron	CG8861 -	chr3R	9320079	intron	CG8861 -	chr3R_36_9315001	chr3R_9315001	RAL-850
2610	chr3R	9361804	9361837	chr3R	9362094	9362128	pogo	16	291	10.5	12.0	11.2	1.3	324	chr3R	9361804	3` UTR	CG45050 +	chr3R	9361966	3` UTR	CG45050 +	chr3R	9362128	3` UTR	CG45050 +	chr3R_16_9360001	chr3R_9360001	RAL-850
2627	chr3R	10196912	10196920	chr3R	10202949	10202957	297	8	6037	21.5	6.5	14.0	0.5	6045	chr3R	10196912	exon	Syn +	chr3R	10199934	intron	Syn +	chr3R	10202957	intron	Syn +	chr3R_8_10195001	chr3R_10195001	RAL-850
2628	chr3R	10231739	10231814	chr3R	10237366	10237414	mdg3	27	5625	8.5	12.5	10.5	2.3	5675	chr3R	10231739	intron	CG42795 +	chr3R	10234576	intron	CG42795 +	chr3R	10237414	intron	CG42795 +	chr3R_27_10230001	chr3R_10230001	RAL-850
2629	chr3R	10255337	10255387	chr3R	10260827	10260877	I-element	22	5486	10.5	12.0	11.2	1.8	5540	chr3R	10255337	intergenic	Sirt6 -,CG3999 +	chr3R	10258107	intron	Sirt6 -	chr3R	10260877	exon	Sirt6 -	chr3R_22_10255001	chr3R_10255001	RAL-850
2658	chr3R	10957817	10957855	chr3R	10963256	10963294	Rt1c	18	5434	14.0	6.5	10.2	1.6	5477	chr3R	10957817	intergenic	not near genes	chr3R	10960556	intergenic	not near genes	chr3R	10963294	intergenic	not near genes	chr3R_18_10960001	chr3R_10960001	RAL-850
2659	chr3R	10957858	10957884	chr3R	10963254	10963323	Rt1c	19	5423	8.5	6.5	7.5	2.2	5465	chr3R	10957858	intergenic	not near genes	chr3R	10960590	intergenic	not near genes	chr3R	10963323	intergenic	not near genes	chr3R_19_10960001	chr3R_10960001	RAL-850
2673	chr3R	11247196	11247226	chr3R	11247327	11247356	INE-1	9	130	13.0	7.0	10.0	0.8	160	chr3R	11247196	intergenic	CG5214 +,CR43283 -	chr3R	11247276	intergenic	CR43283 -,CG5214 +	chr3R	11247356	intergenic	CR43283 -,CG5214 +	chr3R_9_11245001	chr3R_11245001	RAL-850
2680	chr3R	11379196	11379227	chr3R	11388401	11388432	roo	15	9204	10.5	9.5	10.0	1.4	9236	chr3R	11379196	intron	pros +	chr3R	11383814	intron	pros +	chr3R	11388432	intron	pros +	chr3R_15_11380001	chr3R_11380001	RAL-850
2697	chr3R	11841020	11841043	chr3R	11846260	11846284	BS	7	5241	21.5	7.5	14.5	0.5	5264	chr3R	11841020	intron	CG6959 -	chr3R	11843652	intron	CG6959 -	chr3R	11846284	intron	CG6959 -	chr3R_7_11840001	chr3R_11840001	RAL-850
2698	chr3R	11841044	11841087	chr3R	11846253	11846303	BS	19	5227	11.0	6.0	8.5	2.0	5259	chr3R	11841044	intron	CG6959 -	chr3R	11843674	intron	CG6959 -	chr3R	11846303	intron	CG6959 -	chr3R_19_11840001	chr3R_11840001	RAL-850
2701	chr3R	11957812	11957879	chr3R	11958145	11958212	S-element	12	332	7.5	2.5	5.0	2.0	400	chr3R	11957812	intergenic	not near genes	chr3R	11958012	intergenic	not near genes	chr3R	11958212	intergenic	not near genes	chr3R_12_11955001	chr3R_11955001	RAL-850
2706	chr3R	12022839	12022908	chr3R	12025066	12025135	pogo	31	2225	8.0	13.0	10.5	2.7	2296	chr3R	12022839	intergenic	not near genes	chr3R	12023987	intergenic	not near genes	chr3R	12025135	intergenic	not near genes	chr3R_31_12020001	chr3R_12020001	RAL-850
2740	chr3R	12920129	12920179	chr3R	12925362	12925411	copia	21	5248	5.5	7.5	6.5	2.8	5282	chr3R	12920129	intron	beat-Vb +	chr3R	12922770	intron	beat-Vb +	chr3R	12925411	intron	beat-Vb +	chr3R_21_12920001	chr3R_12920001	RAL-850
2750	chr3R	13135789	13135852	chr3R	13138008	13138077	pogo	27	2224	8.5	4.0	6.2	3.8	2288	chr3R	13135789	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136933	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138077	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_27_13135001	chr3R_13135001	RAL-850
2751	chr3R	13142989	13143059	chr3R	13148611	13148630	mdg3	39	5619	8.0	8.5	8.2	4.2	5641	chr3R	13142989	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145810	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148630	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_39_13145001	chr3R_13145001	RAL-850
2761	chr3R	13314069	13314127	chr3R	13318907	13318964	Doc	8	4838	6.0	1.0	3.5	1.8	4895	chr3R	13314069	intergenic	not near genes	chr3R	13316516	intergenic	not near genes	chr3R	13318964	intergenic	CG45080 -	chr3R_8_13315001	chr3R_13315001	RAL-850
2766	chr3R	13517181	13517259	chr3R	13520048	13520125	jockey	14	2866	7.5	0.0	3.8	2.9	2944	chr3R	13517181	intergenic	not near genes	chr3R	13518653	intergenic	not near genes	chr3R	13520125	intergenic	not near genes	chr3R_14_13515001	chr3R_13515001	RAL-850
2787	chr3R	14021606	14021677	chr3R	14023473	14023544	S-element	28	1866	6.5	8.5	7.5	3.3	1938	chr3R	14021606	intron	rdx -	chr3R	14022575	intron	rdx -	chr3R	14023544	intron	rdx -	chr3R_28_14020001	chr3R_14020001	RAL-850
2799	chr3R	14180766	14180831	chr3R	14185581	14185646	F-element	16	4815	5.5	11.0	8.2	1.7	4880	chr3R	14180766	intron	Dop1R1 -	chr3R	14183206	intron	Dop1R1 -	chr3R	14185646	intron	Dop1R1 -	chr3R_16_14180001	chr3R_14180001	RAL-850
2800	chr3R	14194386	14194451	chr3R	14203585	14203634	roo	32	9198	13.5	8.5	11.0	2.7	9248	chr3R	14194386	intron	Dop1R1 -	chr3R	14199010	intron	Dop1R1 -	chr3R	14203634	intron	Dop1R1 -	chr3R_32_14195001	chr3R_14195001	RAL-850
2801	chr3R	14246355	14246365	chr3R	14247901	14247911	jockey	4	1546	24.0	8.0	16.0	0.2	1556	chr3R	14246355	intergenic	not near genes	chr3R	14247133	intergenic	not near genes	chr3R	14247911	intergenic	not near genes	chr3R_4_14245001	chr3R_14245001	RAL-850
2802	chr3R	14246371	14246414	chr3R	14247891	14247953	jockey	14	1535	9.0	6.5	7.8	1.6	1582	chr3R	14246371	intergenic	not near genes	chr3R	14247162	intergenic	not near genes	chr3R	14247953	intergenic	not near genes	chr3R_14_14245001	chr3R_14245001	RAL-850
2825	chr3R	15041352	15041419	chr3R	15045186	15045253	Doc	10	3834	0.0	4.0	2.0	3.3	3901	chr3R	15041352	intergenic	not near genes	chr3R	15043302	intergenic	not near genes	chr3R	15045253	intergenic	not near genes	chr3R_10_15040001	chr3R_15040001	RAL-850
2827	chr3R	15059239	15059299	chr3R	15059499	15059558	BS	4	260	0.0	4.5	2.2	1.2	319	chr3R	15059239	intron	dpr9 -	chr3R	15059398	intron	dpr9 -	chr3R	15059558	intron	dpr9 -	chr3R_4_15055001	chr3R_15055001	RAL-850
2830	chr3R	15079758	15079838	chr3R	15080049	15080122	pogo	28	288	9.0	0.0	4.5	5.1	364	chr3R	15079758	3` UTR	CG6966 -	chr3R	15079940	3` UTR	CG6966 -	chr3R	15080122	3` UTR	CG6966 -	chr3R_28_15075001	chr3R_15075001	RAL-850
2832	chr3R	15102451	15102510	chr3R	15109758	15109817	412	20	7306	12.0	6.5	9.2	2.0	7366	chr3R	15102451	intron	CG42788 -	chr3R	15106134	intron	CG42788 -	chr3R	15109817	intron	CG42788 -	chr3R_20_15105001	chr3R_15105001	RAL-850
2834	chr3R	15132029	15132033	chr3R	15135139	15135143	Juan	4	3110	39.5	29.5	34.5	0.1	3114	chr3R	15132029	intergenic	CG42788 -	chr3R	15133586	intergenic	not near genes	chr3R	15135143	3` UTR	CG6912 -	chr3R_4_15130001	chr3R_15130001	RAL-850
2835	chr3R	15132034	15132062	chr3R	15135137	15135172	Juan	38	3109	26.5	28.5	27.5	1.3	3138	chr3R	15132034	intergenic	CG42788 -	chr3R	15133603	intergenic	not near genes	chr3R	15135172	3` UTR	CG6912 -	chr3R_38_15130001	chr3R_15130001	RAL-850
2837	chr3R	15162499	15162562	chr3R	15167317	15167380	F-element	28	4817	11.5	7.0	9.2	2.7	4881	chr3R	15162499	intron	Gyc88E +	chr3R	15164940	intron	Gyc88E +	chr3R	15167380	intron	Gyc88E +	chr3R_28_15160001	chr3R_15160001	RAL-850
2848	chr3R	15601125	15601189	chr3R	15608697	15608761	412	22	7570	7.5	12.5	10.0	2.0	7636	chr3R	15601125	intergenic	not near genes	chr3R	15604943	intergenic	not near genes	chr3R	15608761	intergenic	not near genes	chr3R_22_15600001	chr3R_15600001	RAL-850
2849	chr3R	15618697	15618758	chr3R	15626221	15626274	blood	16	7521	7.5	8.0	7.8	1.8	7577	chr3R	15618697	intergenic	not near genes	chr3R	15622486	intergenic	not near genes	chr3R	15626274	intergenic	not near genes	chr3R_16_15620001	chr3R_15620001	RAL-850
2856	chr3R	15735194	15735225	chr3R	15739964	15739995	F-element	12	4769	6.5	4.5	5.5	1.8	4801	chr3R	15735194	intergenic	not near genes	chr3R	15737594	intergenic	not near genes	chr3R	15739995	intergenic	not near genes	chr3R_12_15735001	chr3R_15735001	RAL-850
2868	chr3R	16189364	16189438	chr3R	16189817	16189891	invader4	27	453	8.5	11.5	10.0	2.5	527	chr3R	16189364	intron	sra +	chr3R	16189628	intron	sra +	chr3R	16189891	intron	sra +	chr3R_27_16185001	chr3R_16185001	RAL-850
2888	chr3R	16756277	16756296	chr3R	16762518	16762520	diver	11	6239	14.5	5.5	10.0	1.0	6243	chr3R	16756277	intron	bxd -	chr3R	16759398	intron	bxd -	chr3R	16762520	intron	bxd -	chr3R_11_16755001	chr3R_16755001	RAL-850
2889	chr3R	16756297	16756301	chr3R	16762517	16762542	diver	5	6235	14.0	5.5	9.8	0.5	6245	chr3R	16756297	intron	bxd -	chr3R	16759420	intron	bxd -	chr3R	16762542	intron	bxd -	chr3R_5_16755001	chr3R_16755001	RAL-850
2890	chr3R	16756302	16756354	chr3R	16762514	16762570	diver	19	6232	5.5	5.5	5.5	2.9	6268	chr3R	16756302	intron	bxd -	chr3R	16759436	intron	bxd -	chr3R	16762570	intron	bxd -	chr3R_19_16755001	chr3R_16755001	RAL-850
2909	chr3R	17346652	17346707	chr3R	17348265	17348320	F-element	23	1613	5.5	11.5	8.5	2.4	1668	chr3R	17346652	intron	beat-IIa -	chr3R	17347486	intron	beat-IIa -	chr3R	17348320	intron	beat-IIa -	chr3R_23_17345001	chr3R_17345001	RAL-850
2918	chr3R	17509193	17509248	chr3R	17516804	17516853	412	17	7598	7.5	18.5	13.0	1.2	7660	chr3R	17509193	intergenic	not near genes	chr3R	17513023	intergenic	not near genes	chr3R	17516853	intergenic	not near genes	chr3R_17_17510001	chr3R_17510001	RAL-850
2922	chr3R	17591255	17591282	chr3R	17591741	17591762	F-element	10	484	19.0	12.0	15.5	0.6	507	chr3R	17591255	intergenic	not near genes	chr3R	17591508	intergenic	not near genes	chr3R	17591762	intergenic	not near genes	chr3R_10_17590001	chr3R_17590001	RAL-850
2923	chr3R	17591284	17591322	chr3R	17591737	17591773	F-element	12	479	11.5	11.0	11.2	1.0	489	chr3R	17591284	intergenic	not near genes	chr3R	17591528	intergenic	not near genes	chr3R	17591773	intergenic	not near genes	chr3R_12_17590001	chr3R_17590001	RAL-850
2924	chr3R	17638273	17638337	chr3R	17638809	17638873	roo	26	535	9.5	8.5	9.0	2.6	600	chr3R	17638273	intron	CG43175 +	chr3R	17638573	intron	CG43175 +	chr3R	17638873	intron,intron	CG43175 +,CR45222 +	chr3R_26_17635001	chr3R_17635001	RAL-850
2926	chr3R	17657654	17657658	chr3R	17657809	17657859	INE-1	4	190	0.0	8.5	4.2	0.8	205	chr3R	17657654	intron	CG14322 +	chr3R	17657756	intron	CG14322 +	chr3R	17657859	intron	CG14322 +	chr3R_4_17655001	chr3R_17655001	RAL-850
2937	chr3R	17925814	17925869	chr3R	17927328	17927347	hobo	19	1508	12.5	10.5	11.5	1.5	1533	chr3R	17925814	intron	cpo +	chr3R	17926580	intron	cpo +	chr3R	17927347	intron	cpo +	chr3R_19_17925001	chr3R_17925001	RAL-850
2943	chr3R	18032729	18032810	chr3R	18040452	18040533	opus	14	7722	4.0	3.5	3.8	2.9	7804	chr3R	18032729	intergenic	not near genes	chr3R	18036631	intergenic	not near genes	chr3R	18040533	intergenic	not near genes	chr3R_14_18035001	chr3R_18035001	RAL-850
2947	chr3R	18061570	18061586	chr3R	18063194	18063210	F-element	8	1624	0.0	0.5	0.2	6.7	1640	chr3R	18061570	intergenic	not near genes	chr3R	18062390	intergenic	not near genes	chr3R	18063210	intergenic	not near genes	chr3R_8_18060001	chr3R_18060001	RAL-850
2953	chr3R	18331800	18331816	chr3R	18333355	18333371	hopper2	8	1555	8.5	8.5	8.5	0.8	1571	chr3R	18331800	3` UTR	CG15803 -	chr3R	18332586	intron	CG15803 -	chr3R	18333371	3` UTR	CG15803 -	chr3R_8_18330001	chr3R_18330001	RAL-850
2964	chr3R	18606462	18606524	chr3R	18610744	18610806	F-element	27	4281	14.0	10.5	12.2	2.0	4344	chr3R	18606462	intron,intron	qin +,CG14304 -	chr3R	18608634	intron,intron	qin +,CG14304 -	chr3R	18610806	intron,intron	qin +,CG14304 -	chr3R_27_18605001	chr3R_18605001	RAL-850
2984	chr3R	19136406	19136406	chr3R	19139742	19139810	Bari1	37	3347	106.0	63.5	84.8	0.4	3404	chr3R	19136406	exon	Cyp12a4 +	chr3R	19138108	intergenic	not near genes	chr3R	19139810	3` UTR	Ppcs -	chr3R_37_19135001	chr3R_19135001	RAL-850
2986	chr3R	19193002	19193003	chr3R	19197286	19197357	F-element	5	4339	1.0	6.0	3.5	1.1	4355	chr3R	19193002	intron	CG31475 +	chr3R	19195180	intron	CG31475 +	chr3R	19197357	intron	CG31475 +	chr3R_5_19195001	chr3R_19195001	RAL-850
3002	chr3R	19744197	19744207	chr3R	19749491	19749501	Rt1a	7	5294	25.0	16.0	20.5	0.3	5304	chr3R	19744197	intron,intron	GluClalpha +,CR43488 -	chr3R	19746849	intron	GluClalpha +	chr3R	19749501	intron	GluClalpha +	chr3R_7_19745001	chr3R_19745001	RAL-850
3015	chr3R	20109494	20109560	chr3R	20114748	20114816	copia	17	5255	4.0	5.5	4.8	2.9	5322	chr3R	20109494	intergenic	not near genes	chr3R	20112155	intergenic	not near genes	chr3R	20114816	intergenic	CG10887 +	chr3R_17_20110001	chr3R_20110001	RAL-850
3018	chr3R	20156651	20156715	chr3R	20165871	20165935	roo	34	9219	7.5	12.0	9.8	3.1	9284	chr3R	20156651	intergenic	not near genes	chr3R	20161293	intergenic	not near genes	chr3R	20165935	intergenic	not near genes	chr3R_34_20160001	chr3R_20160001	RAL-850
3024	chr3R	20245274	20245293	chr3R	20248934	20248953	F-element	11	3660	0.0	4.0	2.0	3.7	3679	chr3R	20245274	3` UTR	Nlg4 +	chr3R	20247114	intergenic	not near genes	chr3R	20248953	intergenic	not near genes	chr3R_11_20245001	chr3R_20245001	RAL-850
3027	chr3R	20266507	20266527	chr3R	20273028	20273048	Burdock	8	6521	0.0	20.0	10.0	0.7	6541	chr3R	20266507	intron	cic +	chr3R	20269778	intron	cic +	chr3R	20273048	intron	cic +	chr3R_8_20265001	chr3R_20265001	RAL-850
3032	chr3R	20330962	20331021	chr3R	20331497	20331557	roo	18	536	8.0	8.5	8.2	2.0	595	chr3R	20330962	intergenic	Sirt2 +	chr3R	20331260	intergenic	Sirt2 +	chr3R	20331557	intergenic	not near genes	chr3R_18_20330001	chr3R_20330001	RAL-850
3037	chr3R	20506523	20506605	chr3R	20507387	20507458	BS	21	856	0.0	9.5	4.8	3.6	935	chr3R	20506523	intergenic	Or92a +	chr3R	20506990	intergenic	CG4288 -	chr3R	20507458	3` UTR	CG4288 -	chr3R_21_20505001	chr3R_20505001	RAL-850
3038	chr3R	20512953	20513021	chr3R	20515706	20515774	opus	9	2753	9.5	0.0	4.8	1.6	2821	chr3R	20512953	intergenic	CG4288 -	chr3R	20514364	intergenic	not near genes	chr3R	20515774	intergenic	not near genes	chr3R_9_20510001	chr3R_20510001	RAL-850
3048	chr3R	20854447	20854504	chr3R	20859282	20859344	Doc	16	4837	6.5	11.0	8.8	1.6	4897	chr3R	20854447	intron	Ir93a -	chr3R	20856896	intron	Ir93a -	chr3R	20859344	exon	Ir93a -	chr3R_16_20855001	chr3R_20855001	RAL-850
3056	chr3R	21141631	21141691	chr3R	21150162	21150221	Tirant	21	8530	12.5	13.5	13.0	1.5	8590	chr3R	21141631	intron	SNF4Agamma +	chr3R	21145926	intron	SNF4Agamma +	chr3R	21150221	intron	SNF4Agamma +	chr3R_21_21145001	chr3R_21145001	RAL-850
3077	chr3R	21761077	21761150	chr3R	21768519	21768525	mdg1	33	7436	9.5	12.0	10.8	2.8	7448	chr3R	21761077	exon	CG42335 +	chr3R	21764801	intron	CG42335 +	chr3R	21768525	exon	CG42335 +	chr3R_33_21760001	chr3R_21760001	RAL-850
3096	chr3R	22234639	22234714	chr3R	22236008	22236083	pogo	34	1368	4.5	6.0	5.2	5.5	1444	chr3R	22234639	intron	SKIP +	chr3R	22235361	intron	SKIP +	chr3R	22236083	intron	SKIP +	chr3R_34_22235001	chr3R_22235001	RAL-850
3097	chr3R	22239453	22239523	chr3R	22248563	22248621	roo	21	9098	5.0	3.0	4.0	4.2	9168	chr3R	22239453	intron	SKIP +	chr3R	22244037	intron	SKIP +	chr3R	22248621	intron	SKIP +	chr3R_21_22240001	chr3R_22240001	RAL-850
3107	chr3R	22450504	22450571	chr3R	22453194	22453256	NOF	30	2685	7.0	9.5	8.2	3.3	2752	chr3R	22450504	intron	CG34376 +	chr3R	22451880	intron	CG34376 +	chr3R	22453256	intron	CG34376 +	chr3R_30_22450001	chr3R_22450001	RAL-850
3126	chr3R	22881190	22881228	chr3R	22884945	22884983	Doc	12	3754	5.0	9.5	7.2	1.5	3793	chr3R	22881190	intergenic	not near genes	chr3R	22883086	intergenic	not near genes	chr3R	22884983	intergenic	not near genes	chr3R_12_22880001	chr3R_22880001	RAL-850
3142	chr3R	23558351	23558414	chr3R	23560182	23560239	Bari1	21	1830	8.0	3.0	5.5	3.2	1888	chr3R	23558351	intron	beat-IV +	chr3R	23559295	intron	beat-IV +	chr3R	23560239	intron	beat-IV +	chr3R_21_23555001	chr3R_23555001	RAL-850
3151	chr3R	23684650	23684662	chr3R	23685186	23685198	roo	4	536	22.5	10.0	16.2	0.2	548	chr3R	23684650	exon	CG18754 +	chr3R	23684924	intron	CG18754 +	chr3R	23685198	exon	CG18754 +	chr3R_4_23680001	chr3R_23680001	RAL-850
3152	chr3R	23684663	23684727	chr3R	23685184	23685258	roo	26	527	7.0	10.0	8.5	2.7	595	chr3R	23684663	exon	CG18754 +	chr3R	23684960	intron	CG18754 +	chr3R	23685258	exon	CG18754 +	chr3R_26_23680001	chr3R_23680001	RAL-850
3155	chr3R	23835364	23835432	chr3R	23844564	23844630	roo	13	9199	12.5	0.0	6.2	1.8	9266	chr3R	23835364	intron	CG34355 +	chr3R	23839997	intron	CG34355 +	chr3R	23844630	intron	CG34355 +	chr3R_13_23835001	chr3R_23835001	RAL-850
3156	chr3R	23851037	23851081	chr3R	23858754	23858798	opus	14	7717	11.0	12.0	11.5	1.1	7761	chr3R	23851037	3` UTR	CG34355 +	chr3R	23854918	intergenic	not near genes	chr3R	23858798	intergenic	not near genes	chr3R_14_23850001	chr3R_23850001	RAL-850
3164	chr3R	24072045	24072104	chr3R	24072533	24072576	jockey	27	484	20.0	15.5	17.8	1.4	531	chr3R	24072045	intron	4EHP -	chr3R	24072310	intron	4EHP -	chr3R	24072576	intron	4EHP -	chr3R_27_24070001	chr3R_24070001	RAL-850
3165	chr3R	24076881	24076914	chr3R	24078398	24078431	hobo	14	1516	7.5	13.0	10.2	1.2	1550	chr3R	24076881	intron	4EHP -	chr3R	24077656	intron	4EHP -	chr3R	24078431	intron	4EHP -	chr3R_14_24075001	chr3R_24075001	RAL-850
3166	chr3R	24076916	24076941	chr3R	24078389	24078458	hobo	15	1513	6.0	11.0	8.5	1.6	1542	chr3R	24076916	intron	4EHP -	chr3R	24077687	intron	4EHP -	chr3R	24078458	intron	4EHP -	chr3R_15_24075001	chr3R_24075001	RAL-850
3167	chr3R	24207175	24207240	chr3R	24212296	24212367	flea	24	5124	12.5	11.0	11.8	1.9	5192	chr3R	24207175	intron	twin -	chr3R	24209771	intron	twin -	chr3R	24212367	intron	twin -	chr3R_24_24205001	chr3R_24205001	RAL-850
3175	chr3R	24493237	24493302	chr3R	24493516	24493581	BS	40	279	10.5	6.0	8.2	4.3	344	chr3R	24493237	intergenic	not near genes	chr3R	24493409	intergenic	not near genes	chr3R	24493581	intergenic	not near genes	chr3R_40_24490001	chr3R_24490001	RAL-850
3179	chr3R	24594628	24594662	chr3R	24594918	24594952	pogo	12	290	17.0	20.0	18.5	0.6	324	chr3R	24594628	intron	mld +	chr3R	24594790	intron	mld +	chr3R	24594952	intron	mld +	chr3R_12_24590001	chr3R_24590001	RAL-850
3186	chr3R	24730058	24730087	chr3R	24732485	24732501	Doc	6	2423	15.5	3.5	9.5	0.6	2443	chr3R	24730058	intron	tok +	chr3R	24731280	intron	tok +	chr3R	24732501	intron	tok +	chr3R_6_24730001	chr3R_24730001	RAL-850
3190	chr3R	24927086	24927146	chr3R	24931927	24931982	Doc	22	4839	8.5	10.0	9.2	2.2	4896	chr3R	24927086	intergenic	Trf4-2 +	chr3R	24929534	intergenic	not near genes	chr3R	24931982	intergenic	CG11771 +	chr3R_22_24925001	chr3R_24925001	RAL-850
3202	chr3R	25324340	25324388	chr3R	25328955	25329003	Doc	28	4614	9.5	18.0	13.8	1.9	4663	chr3R	25324340	exon	CHKov1 -	chr3R	25326672	intron	CHKov1 -	chr3R	25329003	intron	CHKov1 -	chr3R_28_25325001	chr3R_25325001	RAL-850
3224	chr3R	25725789	25725851	chr3R	25734999	25735061	roo	21	9210	8.0	8.0	8.0	2.3	9272	chr3R	25725789	intron	LpR2 -	chr3R	25730425	intron	LpR2 -	chr3R	25735061	intron	LpR2 -	chr3R_21_25730001	chr3R_25730001	RAL-850
3229	chr3R	25832657	25832687	chr3R	25841889	25841909	roo	12	9231	13.0	11.5	12.2	0.9	9252	chr3R	25832657	exon	alpha4GT2 +	chr3R	25837283	intron	alpha4GT2 +	chr3R	25841909	exon	alpha4GT2 +	chr3R_12_25835001	chr3R_25835001	RAL-850
3230	chr3R	25832693	25832722	chr3R	25841874	25841924	roo	14	9224	7.0	9.0	8.0	1.6	9231	chr3R	25832693	exon	alpha4GT2 +	chr3R	25837308	intron	alpha4GT2 +	chr3R	25841924	exon	alpha4GT2 +	chr3R_14_25835001	chr3R_25835001	RAL-850
3237	chr3R	26108779	26108820	chr3R	26117410	26117421	Tirant	8	8627	10.0	0.5	5.2	1.3	8642	chr3R	26108779	5` UTR	CG31324 +	chr3R	26113100	intron	CG31324 +	chr3R	26117421	intron	CG31324 +	chr3R_8_26110001	chr3R_26110001	RAL-850
3251	chr3R	26376284	26376342	chr3R	26385494	26385552	roo	29	9208	10.0	10.5	10.2	2.6	9268	chr3R	26376284	intergenic	not near genes	chr3R	26380918	intergenic	not near genes	chr3R	26385552	intergenic	not near genes	chr3R_29_26380001	chr3R_26380001	RAL-850
3255	chr3R	26510472	26510528	chr3R	26519577	26519633	roo	22	9105	9.5	10.5	10.0	2.0	9161	chr3R	26510472	intron	plum -	chr3R	26515052	intron	plum -	chr3R	26519633	intron,5` UTR	plum -,CR45226 +	chr3R_22_26515001	chr3R_26515001	RAL-850
3258	chr3R	26558289	26558306	chr3R	26565651	26565668	Stalker4	10	7360	20.5	10.0	15.2	0.6	7379	chr3R	26558289	intron	scrib +	chr3R	26561978	intron	scrib +	chr3R	26565668	intron	scrib +	chr3R_10_26560001	chr3R_26560001	RAL-850
3259	chr3R	26558308	26558349	chr3R	26565642	26565711	Stalker4	18	7355	11.0	8.5	9.8	1.7	7403	chr3R	26558308	intron	scrib +	chr3R	26562010	intron	scrib +	chr3R	26565711	intron	scrib +	chr3R_18_26560001	chr3R_26560001	RAL-850
3263	chr3R	26642695	26642755	chr3R	26643134	26643198	jockey	21	443	14.0	7.0	10.5	1.8	503	chr3R	26642695	intergenic	not near genes	chr3R	26642946	intergenic	not near genes	chr3R	26643198	intergenic	not near genes	chr3R_21_26640001	chr3R_26640001	RAL-850
3267	chr3R	26810506	26810576	chr3R	26811041	26811091	roo	23	534	7.0	12.0	9.5	2.2	585	chr3R	26810506	intron	Tl +	chr3R	26810798	intron	Tl +	chr3R	26811091	intron	Tl +	chr3R_23_26810001	chr3R_26810001	RAL-850
3273	chr3R	27007363	27007430	chr3R	27016548	27016615	roo	24	9183	11.5	7.0	9.2	2.4	9252	chr3R	27007363	intron	RYa-R +	chr3R	27011989	intron	RYa-R +	chr3R	27016615	intron	RYa-R +	chr3R_24_27010001	chr3R_27010001	RAL-850
3283	chr3R	27140472	27140540	chr3R	27148127	27148200	412	38	7657	12.0	8.0	10.0	3.5	7728	chr3R	27140472	intron	CG6051 -	chr3R	27144336	intron	CG6051 -	chr3R	27148200	intron	CG6051 -	chr3R_38_27140001	chr3R_27140001	RAL-850
3289	chr3R	27342751	27342818	chr3R	27351382	27351449	Tirant	22	8631	9.0	9.5	9.2	2.2	8698	chr3R	27342751	intron	CG42534 +	chr3R	27347100	intron	CG42534 +	chr3R	27351449	intron	CG42534 +	chr3R_22_27345001	chr3R_27345001	RAL-850
3301	chr3R	27521116	27521178	chr3R	27530375	27530437	roo	19	9259	9.5	8.5	9.0	1.9	9321	chr3R	27521116	intron	CG12885 +	chr3R	27525776	intron	CG12885 +	chr3R	27530437	intron	CG12885 +	chr3R_19_27525001	chr3R_27525001	RAL-850
3304	chr3R	27725554	27725603	chr3R	27731047	27731085	I-element	8	5492	4.0	15.0	9.5	0.8	5531	chr3R	27725554	intergenic	not near genes	chr3R	27728320	intergenic	not near genes	chr3R	27731085	intergenic	not near genes	chr3R_8_27725001	chr3R_27725001	RAL-850
3306	chr3R	27791601	27791646	chr3R	27794793	27794811	Rt1c	10	3186	13.0	13.5	13.2	0.7	3210	chr3R	27791601	intron	CG34353 -	chr3R	27793206	intron	CG34353 -	chr3R	27794811	intron	CG34353 -	chr3R_10_27790001	chr3R_27790001	RAL-850
3309	chr3R	27856716	27856777	chr3R	27858249	27858310	hopper2	22	1532	10.5	9.0	9.8	2.0	1594	chr3R	27856716	intron	CG34353 -	chr3R	27857513	intron	CG34353 -	chr3R	27858310	intron	CG34353 -	chr3R_22_27855001	chr3R_27855001	RAL-850
3310	chr3R	27862931	27862953	chr3R	27868287	27868309	Transpac	10	5356	0.0	11.0	5.5	1.5	5378	chr3R	27862931	intron	CG34353 -	chr3R	27865620	intron	CG34353 -	chr3R	27868309	intron	CG34353 -	chr3R_10_27865001	chr3R_27865001	RAL-850
3311	chr3R	27875661	27875723	chr3R	27882766	27882828	297	25	7103	12.5	13.5	13.0	1.8	7167	chr3R	27875661	intron	CG34353 -	chr3R	27879244	intron	CG34353 -	chr3R	27882828	intron	CG34353 -	chr3R_25_27875001	chr3R_27875001	RAL-850
3316	chr3R	28068453	28068510	chr3R	28073945	28074002	I-element	26	5489	7.0	5.5	6.2	3.6	5549	chr3R	28068453	intron	CG34362 +	chr3R	28071228	intron	CG34362 +	chr3R	28074002	intron	CG34362 +	chr3R_26_28070001	chr3R_28070001	RAL-850
3317	chr3R	28173628	28173696	chr3R	28181108	28181176	mdg1	24	7480	8.5	5.5	7.0	3.0	7548	chr3R	28173628	intron	CG34354 +	chr3R	28177402	intron	CG34354 +	chr3R	28181176	intron	CG34354 +	chr3R_24_28175001	chr3R_28175001	RAL-850
3318	chr3R	28253320	28253355	chr3R	28255852	28255915	jockey	18	2550	8.5	6.5	7.5	2.1	2595	chr3R	28253320	intergenic	not near genes	chr3R	28254618	intergenic	not near genes	chr3R	28255915	intergenic	not near genes	chr3R_18_28250001	chr3R_28250001	RAL-850
3320	chr3R	28302068	28302122	chr3R	28302557	28302611	jockey	21	489	14.5	12.5	13.5	1.4	543	chr3R	28302068	intergenic	not near genes	chr3R	28302340	intergenic	not near genes	chr3R	28302611	intergenic	not near genes	chr3R_21_28300001	chr3R_28300001	RAL-850
3337	chr3R	28758242	28758254	chr3R	28763908	28763921	roo	7	5665	24.0	0.0	12.0	0.5	5679	chr3R	28758242	intergenic	aqrs -	chr3R	28761082	intergenic	not near genes	chr3R	28763921	intergenic	not near genes	chr3R_7_28760001	chr3R_28760001	RAL-850
3338	chr3R	28758276	28758319	chr3R	28771333	28771376	Stalker4	12	13057	8.0	5.5	6.8	1.5	13100	chr3R	28758276	intergenic	aqrs -	chr3R	28764826	intergenic	not near genes	chr3R	28771376	intergenic	not near genes	chr3R_12_28760001	chr3R_28760001	RAL-850
3339	chr3R	28763907	28763920	chr3R	28771400	28771413	Stalker4	8	7493	0.0	12.5	6.2	1.1	7506	chr3R	28763907	intergenic	not near genes	chr3R	28767660	intergenic	not near genes	chr3R	28771413	intergenic	not near genes	chr3R_8_28765001	chr3R_28765001	RAL-850
3340	chr3R	28792827	28792898	chr3R	28797967	28798043	jockey	25	5138	7.0	6.0	6.5	3.3	5216	chr3R	28792827	intergenic	not near genes	chr3R	28795435	intergenic	not near genes	chr3R	28798043	intergenic	not near genes	chr3R_25_28795001	chr3R_28795001	RAL-850
3355	chr3R	29079341	29079408	chr3R	29080763	29080830	NOF	24	1420	7.0	9.0	8.0	2.7	1489	chr3R	29079341	intron	CG11873 +	chr3R	29080086	intron	CG11873 +	chr3R	29080830	intron	CG11873 +	chr3R_24_29080001	chr3R_29080001	RAL-850
3367	chr3R	29319778	29319848	chr3R	29320147	29320217	jockey	14	368	9.0	8.0	8.5	1.5	439	chr3R	29319778	intergenic	Cnx99A -	chr3R	29319998	intergenic	Cnx99A -	chr3R	29320217	intergenic	not near genes	chr3R_14_29315001	chr3R_29315001	RAL-850
3372	chr3R	29406572	29406640	chr3R	29407908	29407963	jockey	16	1323	13.0	7.5	10.2	1.4	1391	chr3R	29406572	intron	Ptp99A +	chr3R	29407268	intron	Ptp99A +	chr3R	29407963	intron	Ptp99A +	chr3R_16_29405001	chr3R_29405001	RAL-850
3389	chr3R	29738220	29738292	chr3R	29739736	29739809	hobo	29	1515	7.0	6.0	6.5	3.9	1589	chr3R	29738220	intergenic	CG1969 +,CG7598 +	chr3R	29739014	intron	CG1969 +	chr3R	29739809	5` UTR	CG1969 +	chr3R_29_29735001	chr3R_29735001	RAL-850
3390	chr3R	29760319	29760380	chr3R	29761570	29761631	pogo	13	1251	12.5	9.0	10.8	1.1	1312	chr3R	29760319	intergenic	not near genes	chr3R	29760975	intergenic	not near genes	chr3R	29761631	intergenic	not near genes	chr3R_13_29760001	chr3R_29760001	RAL-850
3391	chr3R	29881977	29882002	chr3R	29891184	29891209	roo	17	9207	23.5	9.0	16.2	1.0	9232	chr3R	29881977	intron	CG31038 +	chr3R	29886593	intron	CG31038 +	chr3R	29891209	intron	CG31038 +	chr3R_17_29885001	chr3R_29885001	RAL-850
3392	chr3R	29882005	29882045	chr3R	29891181	29891252	roo	28	9206	11.5	9.0	10.2	2.5	9247	chr3R	29882005	intron	CG31038 +	chr3R	29886628	intron	CG31038 +	chr3R	29891252	intron	CG31038 +	chr3R_28_29885001	chr3R_29885001	RAL-850
3401	chr3R	30084871	30084876	chr3R	30086363	30086383	hobo	4	1508	1.5	17.0	9.2	0.4	1512	chr3R	30084871	intron	sima +	chr3R	30085627	intron	sima +	chr3R	30086383	intron	sima +	chr3R_4_30085001	chr3R_30085001	RAL-850
3413	chr3R	30238711	30238753	chr3R	30239925	30239968	1360	10	1215	13.0	0.0	6.5	1.3	1257	chr3R	30238711	intergenic	not near genes	chr3R	30239340	intergenic	not near genes	chr3R	30239968	intergenic	not near genes	chr3R_10_30235001	chr3R_30235001	RAL-850
3419	chr3R	30317293	30317356	chr3R	30324917	30324998	roo	20	7629	1.0	4.0	2.5	5.7	7705	chr3R	30317293	intron	hdc +	chr3R	30321146	intron	hdc +	chr3R	30324998	intron	hdc +	chr3R_20_30320001	chr3R_30320001	RAL-850
3423	chr3R	30375495	30375570	chr3R	30383168	30383242	412	8	7673	4.5	6.0	5.2	1.3	7747	chr3R	30375495	intergenic	not near genes	chr3R	30379368	intergenic	not near genes	chr3R	30383242	intergenic	not near genes	chr3R_8_30375001	chr3R_30375001	RAL-850
3424	chr3R	30396177	30396232	chr3R	30404493	30404548	roo	17	8314	7.5	7.0	7.2	2.1	8371	chr3R	30396177	intergenic	not near genes	chr3R	30400362	intergenic	not near genes	chr3R	30404548	5` UTR	CR45570 +	chr3R_17_30400001	chr3R_30400001	RAL-850
3426	chr3R	30480445	30480505	chr3R	30482949	30483023	jockey	26	2511	9.5	1.0	5.2	4.2	2578	chr3R	30480445	intron	PH4alphaEFB +	chr3R	30481734	intron	PH4alphaEFB +	chr3R	30483023	intron	PH4alphaEFB +	chr3R_26_30480001	chr3R_30480001	RAL-850
3438	chr3R	30679488	30679551	chr3R	30687007	30687070	blood	30	7518	6.0	10.0	8.0	3.3	7582	chr3R	30679488	intergenic	not near genes	chr3R	30683279	intergenic	not near genes	chr3R	30687070	intergenic	not near genes	chr3R_30_30680001	chr3R_30680001	RAL-850
3449	chr3R	31074191	31074216	chr3R	31081839	31081864	springer	5	7647	16.5	9.5	13.0	0.4	7673	chr3R	31074191	intron	Sox100B +	chr3R	31078028	intron	Sox100B +	chr3R	31081864	intron	Sox100B +	chr3R_5_31075001	chr3R_31075001	RAL-850
3450	chr3R	31074217	31074239	chr3R	31081831	31081887	springer	8	7644	14.0	8.0	11.0	0.7	7670	chr3R	31074217	intron	Sox100B +	chr3R	31078052	intron	Sox100B +	chr3R	31081887	intron	Sox100B +	chr3R_8_31075001	chr3R_31075001	RAL-850
3453	chr3R	31279340	31279390	chr3R	31285564	31285595	diver	22	6235	12.5	8.0	10.2	2.0	6255	chr3R	31279340	intergenic	not near genes	chr3R	31282468	intergenic	not near genes	chr3R	31285595	intergenic	not near genes	chr3R_22_31280001	chr3R_31280001	RAL-850
3454	chr3R	31413052	31413092	chr3R	31418292	31418316	copia	11	5244	13.0	0.5	6.8	1.4	5264	chr3R	31413052	intron	Gprk2 +	chr3R	31415684	intron	Gprk2 +	chr3R	31418316	intron	Gprk2 +	chr3R_11_31415001	chr3R_31415001	RAL-850
3466	chr3R	31691491	31691556	chr3R	31696307	31696372	Doc	36	4813	14.5	11.5	13.0	2.6	4881	chr3R	31691491	intergenic	not near genes	chr3R	31693932	intergenic	not near genes	chr3R	31696372	intergenic	not near genes	chr3R_36_31690001	chr3R_31690001	RAL-850
3477	chr3R	31997949	31998016	chr3R	32005469	32005536	blood	22	7518	6.5	8.0	7.2	2.7	7587	chr3R	31997949	intron	heph -	chr3R	32001742	intron	heph -	chr3R	32005536	intron	heph -	chr3R_22_32000001	chr3R_32000001	RAL-850
3480	chr4	76458	76508	chr4	81951	82001	I-element	22	5490	8.0	9.0	8.5	2.3	5543	chr4	76458	intron	pan +	chr4	79230	intron	pan +	chr4	82001	intron	pan +	chr4_22_75001	chr4_75001	RAL-850
3482	chr4	319951	320017	chr4	328177	328243	Stalker2	17	8226	4.5	6.0	5.2	2.7	8292	chr4	319951	3` UTR	CG32850 +	chr4	324097	intron	CG32850 +	chr4	328243	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_17_320001	chr4_320001	RAL-850
3485	chr4	498157	498171	chr4	498303	498317	INE-1	10	146	12.5	11.0	11.8	0.8	160	chr4	498157	intergenic	not near genes	chr4	498237	intergenic	not near genes	chr4	498317	intergenic	not near genes	chr4_10_495001	chr4_495001	RAL-850
3486	chr4	662138	662206	chr4	662833	662901	INE-1	22	695	5.5	4.5	5.0	3.7	763	chr4	662138	intron	gw -	chr4	662520	intron	gw -	chr4	662901	5` UTR	gw -	chr4_22_660001	chr4_660001	RAL-850
3487	chr4	671563	671573	chr4	680196	680206	Tirant	9	8633	24.0	14.0	19.0	0.5	8643	chr4	671563	intron	CG11360 +	chr4	675884	intron	CG11360 +	chr4	680206	intron	CG11360 +	chr4_9_675001	chr4_675001	RAL-850
3488	chr4	671574	671626	chr4	680194	680259	Tirant	28	8629	10.0	13.5	11.8	2.2	8685	chr4	671574	intron	CG11360 +	chr4	675916	intron	CG11360 +	chr4	680259	intron	CG11360 +	chr4_28_675001	chr4_675001	RAL-850
3490	chrX	295815	295875	chrX	303485	303540	412	14	7666	3.5	7.0	5.2	2.3	7725	chrX	295815	intron	CG3777 +	chrX	299678	intron	CG3777 +	chrX	303540	intron	CG3777 +	chrX_14_295001	chrX_295001	RAL-850
3491	chrX	318430	318491	chrX	323566	323627	flea	20	5135	9.0	8.5	8.8	2.0	5197	chrX	318430	intron,intron	CG3777 +,CG32816 -	chrX	321028	intron,intron	CG3777 +,CG32816 -	chrX	323627	intron,intron	CG3777 +,CG32816 -	chrX_20_320001	chrX_320001	RAL-850
3493	chrX	428378	428444	chrX	434613	434679	3S18	26	6235	8.5	8.5	8.5	2.7	6301	chrX	428378	intron	CG32816 -	chrX	431528	intron	CG32816 -	chrX	434679	intron	CG32816 -	chrX_26_430001	chrX_430001	RAL-850
3496	chrX	551381	551395	chrX	558993	559007	412	4	7612	17.5	7.0	12.2	0.3	7626	chrX	551381	intron	Appl +	chrX	555194	intron	Appl +	chrX	559007	intron	Appl +	chrX_4_555001	chrX_555001	RAL-850
3497	chrX	551397	551449	chrX	558988	559061	412	27	7605	9.0	7.0	8.0	3.0	7664	chrX	551397	intron	Appl +	chrX	555229	intron	Appl +	chrX	559061	intron	Appl +	chrX_27_555001	chrX_555001	RAL-850
3501	chrX	812223	812286	chrX	817904	817967	297	18	5678	12.0	9.0	10.5	1.6	5744	chrX	812223	intron	CG43867 -	chrX	815095	intron	CG43867 -	chrX	817967	intron	CG43867 -	chrX_18_815001	chrX_815001	RAL-850
3502	chrX	827569	827623	chrX	835411	835465	roo	26	7842	11.0	10.5	10.8	2.2	7896	chrX	827569	intron	CG43867 -	chrX	831517	intron	CG43867 -	chrX	835465	intron	CG43867 -	chrX_26_830001	chrX_830001	RAL-850
3503	chrX	906658	906677	chrX	908497	908516	S-element	7	1839	15.0	11.0	13.0	0.5	1858	chrX	906658	intron	CG43867 -	chrX	907587	intron	CG43867 -	chrX	908516	intron	CG43867 -	chrX_7_905001	chrX_905001	RAL-850
3504	chrX	906678	906724	chrX	908495	908556	S-element	16	1833	8.5	10.5	9.5	1.5	1878	chrX	906678	intron	CG43867 -	chrX	907617	intron	CG43867 -	chrX	908556	intron	CG43867 -	chrX_16_905001	chrX_905001	RAL-850
3506	chrX	1033307	1033322	chrX	1040990	1041005	412	8	7683	13.5	6.5	10.0	0.7	7698	chrX	1033307	intron	su(w[a]) +	chrX	1037156	intron	su(w[a]) +	chrX	1041005	intron	su(w[a]) +	chrX_8_1035001	chrX_1035001	RAL-850
3507	chrX	1063714	1063745	chrX	1072557	1072588	roo	6	8843	13.5	8.0	10.8	0.5	8874	chrX	1063714	intron	CR44779 +	chrX	1068151	intron	CR44779 +	chrX	1072588	intron	CR44779 +	chrX_6_1065001	chrX_1065001	RAL-850
3514	chrX	1357732	1357795	chrX	1367952	1368014	Doc	24	10218	8.0	9.5	8.8	2.4	10282	chrX	1357732	intergenic	png -	chrX	1362873	intergenic	not near genes	chrX	1368014	intergenic	not near genes	chrX_24_1360001	chrX_1360001	RAL-850
3517	chrX	1518010	1518037	chrX	1523451	1523489	jockey	13	5449	17.5	9.0	13.2	0.9	5479	chrX	1518010	intergenic	inc +	chrX	1520750	intergenic	not near genes	chrX	1523489	intergenic	not near genes	chrX_13_1520001	chrX_1520001	RAL-850
3518	chrX	1518041	1518065	chrX	1523440	1523505	jockey	9	5441	8.0	8.0	8.0	1.0	5464	chrX	1518041	intergenic	inc +	chrX	1520773	intergenic	not near genes	chrX	1523505	intergenic	not near genes	chrX_9_1520001	chrX_1520001	RAL-850
3519	chrX	1930494	1930560	chrX	1938115	1938181	opus	28	7621	8.0	7.0	7.5	3.3	7687	chrX	1930494	3` UTR	CG11596 +	chrX	1934338	intergenic	not near genes	chrX	1938181	3` UTR	CG3857 -	chrX_28_1930001	chrX_1930001	RAL-850
3520	chrX	1954845	1954915	chrX	1962829	1962883	Stalker2	19	7974	6.0	3.0	4.5	3.5	8038	chrX	1954845	intron	Hr4 +	chrX	1958864	intron	Hr4 +	chrX	1962883	intron	Hr4 +	chrX_19_1955001	chrX_1955001	RAL-850
3528	chrX	2308796	2308818	chrX	2317429	2317451	Tirant	5	8632	11.0	18.5	14.8	0.3	8655	chrX	2308796	intron	phl +	chrX	2313124	intron	phl +	chrX	2317451	intron	phl +	chrX_5_2310001	chrX_2310001	RAL-850
3529	chrX	2399807	2399810	chrX	2408197	2408213	roo	5	8396	24.0	1.5	12.8	0.4	8406	chrX	2399807	intergenic	not near genes	chrX	2404010	intergenic	not near genes	chrX	2408213	intergenic	not near genes	chrX_5_2400001	chrX_2400001	RAL-850
3530	chrX	2399812	2399823	chrX	2408192	2408195	roo	5	8383	22.5	0.0	11.2	0.4	8383	chrX	2399812	intergenic	not near genes	chrX	2404004	intergenic	not near genes	chrX	2408195	intergenic	not near genes	chrX_5_2400001	chrX_2400001	RAL-850
3531	chrX	2399825	2399866	chrX	2408188	2408251	roo	14	8366	12.5	0.0	6.2	1.9	8426	chrX	2399825	intergenic	not near genes	chrX	2404038	intergenic	not near genes	chrX	2408251	intergenic	not near genes	chrX_14_2400001	chrX_2400001	RAL-850
3536	chrX	2664348	2664412	chrX	2665544	2665598	1360	30	1195	9.0	4.5	6.8	3.8	1250	chrX	2664348	intron	sgg +	chrX	2664973	intron	sgg +	chrX	2665598	intron	sgg +	chrX_30_2660001	chrX_2660001	RAL-850
3539	chrX	2823755	2823771	chrX	2832353	2832369	roo	5	8598	14.5	15.0	14.8	0.3	8614	chrX	2823755	intron	kirre +	chrX	2828062	intron	kirre +	chrX	2832369	intron	kirre +	chrX_5_2825001	chrX_2825001	RAL-850
3540	chrX	2844859	2844923	chrX	2852319	2852383	mdg1	25	7460	4.0	7.0	5.5	3.8	7524	chrX	2844859	intron	kirre +	chrX	2848621	intron	kirre +	chrX	2852383	intron	kirre +	chrX_25_2845001	chrX_2845001	RAL-850
3544	chrX	3057979	3058042	chrX	3058270	3058333	pogo	19	291	7.0	5.0	6.0	2.7	354	chrX	3057979	intron	kirre +	chrX	3058156	intron	kirre +	chrX	3058333	intron	kirre +	chrX_19_3055001	chrX_3055001	RAL-850
3545	chrX	3075580	3075612	chrX	3080941	3080973	Transpac	6	5361	11.0	2.0	6.5	0.8	5393	chrX	3075580	intron	kirre +	chrX	3078276	intron	kirre +	chrX	3080973	intron	kirre +	chrX_6_3075001	chrX_3075001	RAL-850
3551	chrX	3218486	3218526	chrX	3227685	3227725	roo	5	9199	1.5	6.0	3.8	1.0	9239	chrX	3218486	intron	dnc +	chrX	3223106	intron	dnc +	chrX	3227725	intron	dnc +	chrX_5_3220001	chrX_3220001	RAL-850
3559	chrX	3414977	3415011	chrX	3421212	3421236	3S18	5	6231	6.0	4.5	5.2	0.8	6259	chrX	3414977	intron,intron	CR44999 +,CG12535 -	chrX	3418106	intron,intron	CR44999 +,CG12535 -	chrX	3421236	intron,intron	CR44999 +,CG12535 -	chrX_5_3415001	chrX_3415001	RAL-850
3560	chrX	3415012	3415043	chrX	3421201	3421278	3S18	8	6229	2.5	3.5	3.0	2.0	6266	chrX	3415012	intron,intron	CR44999 +,CG12535 -	chrX	3418145	intron,intron	CR44999 +,CG12535 -	chrX	3421278	intron,intron	CR44999 +,CG12535 -	chrX_8_3415001	chrX_3415001	RAL-850
3562	chrX	3493054	3493115	chrX	3502258	3502324	roo	12	9205	6.5	2.0	4.2	2.3	9270	chrX	3493054	intron,intron	CR44999 +,Gas8 -	chrX	3497689	intron,intron	CR44999 +,Gas8 -	chrX	3502324	intron,intron	CR44999 +,Gas8 -	chrX_12_3495001	chrX_3495001	RAL-850
3564	chrX	3597514	3597574	chrX	3619731	3619792	roo	23	22216	13.5	17.5	15.5	1.4	22278	chrX	3597514	intron	AstA-R1 +	chrX	3608653	intron	AstA-R1 +	chrX	3619792	intron	AstA-R1 +	chrX_23_3605001	chrX_3605001	RAL-850
3566	chrX	3726726	3726776	chrX	3730173	3730223	NOF	12	3446	5.0	8.5	6.8	1.5	3497	chrX	3726726	intron	tlk +	chrX	3728474	intron	tlk +	chrX	3730223	intron	tlk +	chrX_12_3725001	chrX_3725001	RAL-850
3567	chrX	3842308	3842352	chrX	3842576	3842619	pogo	20	268	7.5	5.0	6.2	2.8	311	chrX	3842308	intron	ec +	chrX	3842464	intron	ec +	chrX	3842619	intron	ec +	chrX_20_3840001	chrX_3840001	RAL-850
3571	chrX	3986831	3986839	chrX	3994514	3994522	412	5	7683	18.0	13.5	15.8	0.3	7691	chrX	3986831	intergenic	not near genes	chrX	3990676	intergenic	not near genes	chrX	3994522	intergenic	not near genes	chrX_5_3990001	chrX_3990001	RAL-850
3572	chrX	3986840	3986893	chrX	3994511	3994574	412	20	7682	7.0	13.0	10.0	1.8	7734	chrX	3986840	intergenic	not near genes	chrX	3990707	intergenic	not near genes	chrX	3994574	intergenic	not near genes	chrX_20_3990001	chrX_3990001	RAL-850
3579	chrX	4157849	4157920	chrX	4164952	4165022	297	16	7101	3.5	7.0	5.2	2.6	7173	chrX	4157849	intron	Fas2 -	chrX	4161436	intron	Fas2 -	chrX	4165022	intron	Fas2 -	chrX_16_4160001	chrX_4160001	RAL-850
3586	chrX	4700349	4700369	chrX	4700742	4700762	jockey	10	392	15.5	7.5	11.5	0.8	413	chrX	4700349	3` UTR	ctp +	chrX	4700556	3` UTR	ctp +	chrX	4700762	3` UTR	ctp +	chrX_10_4700001	chrX_4700001	RAL-850
3587	chrX	4700370	4700417	chrX	4700736	4700810	jockey	18	390	8.0	7.0	7.5	2.1	440	chrX	4700370	3` UTR	ctp +	chrX	4700590	3` UTR	ctp +	chrX	4700810	3` UTR	ctp +	chrX_18_4700001	chrX_4700001	RAL-850
3590	chrX	4731781	4731782	chrX	4736917	4736925	jockey	5	5141	15.5	12.0	13.8	0.3	5144	chrX	4731781	intergenic	not near genes	chrX	4734353	intergenic	not near genes	chrX	4736925	intergenic	not near genes	chrX_5_4730001	chrX_4730001	RAL-850
3594	chrX	4763216	4763277	chrX	4763754	4763804	Stalker4	15	536	7.5	12.0	9.8	1.4	588	chrX	4763216	intergenic	not near genes	chrX	4763510	intergenic	not near genes	chrX	4763804	intergenic	not near genes	chrX_15_4760001	chrX_4760001	RAL-850
3595	chrX	4792332	4792393	chrX	4792815	4792876	jockey	21	479	7.5	8.5	8.0	2.3	544	chrX	4792332	intergenic	not near genes	chrX	4792604	intergenic	not near genes	chrX	4792876	intergenic	not near genes	chrX_21_4790001	chrX_4790001	RAL-850
3597	chrX	4827928	4827954	chrX	4835349	4835370	Stalker4	8	7420	15.5	8.0	11.8	0.6	7442	chrX	4827928	intergenic	not near genes	chrX	4831649	intergenic	not near genes	chrX	4835370	intergenic	not near genes	chrX_8_4830001	chrX_4830001	RAL-850
3598	chrX	4827956	4827996	chrX	4835337	4835351	Stalker4	20	7392	9.5	6.0	7.8	2.3	7395	chrX	4827956	intergenic	not near genes	chrX	4831654	intergenic	not near genes	chrX	4835351	intergenic	not near genes	chrX_20_4830001	chrX_4830001	RAL-850
3600	chrX	4990004	4990062	chrX	4997268	4997326	roo	15	7264	8.0	8.5	8.2	1.6	7322	chrX	4990004	intron	CR44833 -	chrX	4993665	intron	CR44833 -	chrX	4997326	intron	CR44833 -	chrX_15_4990001	chrX_4990001	RAL-850
3601	chrX	5096246	5096300	chrX	5103841	5103915	springer	19	7610	8.0	6.5	7.2	2.3	7669	chrX	5096246	intron,intron	CG15465 +,rg +	chrX	5100080	intron,intron	CG15465 +,rg +	chrX	5103915	intron,intron	CG15465 +,rg +	chrX_19_5100001	chrX_5100001	RAL-850
3610	chrX	5338661	5338730	chrX	5339964	5339993	jockey	12	1298	7.0	4.0	5.5	1.8	1332	chrX	5338661	intergenic	not near genes	chrX	5339327	intergenic	not near genes	chrX	5339993	intergenic	SK +	chrX_12_5335001	chrX_5335001	RAL-850
3615	chrX	5524803	5524827	chrX	5528716	5528740	412	13	3913	12.0	2.0	7.0	1.6	3937	chrX	5524803	intergenic	snoRNA:Psi28S-3342 -	chrX	5526772	intergenic	not near genes	chrX	5528740	intergenic	Vsx2 -	chrX_13_5525001	chrX_5525001	RAL-850
3619	chrX	5727376	5727412	chrX	5732165	5732201	Doc	12	4788	9.5	7.5	8.5	1.3	4825	chrX	5727376	intron	CG32758 -	chrX	5729788	intron	CG32758 -	chrX	5732201	intron	CG32758 -	chrX_12_5725001	chrX_5725001	RAL-850
3623	chrX	5883784	5883808	chrX	5884075	5884099	pogo	10	291	0.0	10.0	5.0	1.7	315	chrX	5883784	intron	CR45668 -	chrX	5883942	intron	CR45668 -	chrX	5884099	intron	CR45668 -	chrX_10_5880001	chrX_5880001	RAL-850
3624	chrX	5883810	5883835	chrX	5884073	5884126	pogo	9	286	0.0	9.5	4.8	1.6	316	chrX	5883810	intron	CR45668 -	chrX	5883968	intron	CR45668 -	chrX	5884126	intron	CR45668 -	chrX_9_5880001	chrX_5880001	RAL-850
3625	chrX	5884123	5884177	chrX	5884414	5884466	pogo	17	291	9.5	5.5	7.5	2.0	343	chrX	5884123	intron	CR45668 -	chrX	5884294	intron	CR45668 -	chrX	5884466	intron	CR45668 -	chrX_17_5880001	chrX_5880001	RAL-850
3629	chrX	6171557	6171602	chrX	6179024	6179085	Quasimodo	13	7479	7.0	9.5	8.2	1.4	7528	chrX	6171557	intron	Ca-alpha1T -	chrX	6175321	intron	Ca-alpha1T -	chrX	6179085	intron	Ca-alpha1T -	chrX_13_6175001	chrX_6175001	RAL-850
3632	chrX	6335218	6335241	chrX	6337778	6337800	Tirant	11	2560	0.0	13.0	6.5	1.5	2582	chrX	6335218	intergenic	not near genes	chrX	6336509	intergenic	not near genes	chrX	6337800	5` UTR	CG3842 +	chrX_11_6335001	chrX_6335001	RAL-850
3635	chrX	6392828	6392845	chrX	6397643	6397660	Doc	13	4815	20.0	7.5	13.8	0.9	4832	chrX	6392828	intergenic	not near genes	chrX	6395244	intergenic	not near genes	chrX	6397660	intergenic	not near genes	chrX_13_6395001	chrX_6395001	RAL-850
3636	chrX	6392846	6392895	chrX	6397639	6397710	Doc	23	4811	7.5	7.5	7.5	2.7	4864	chrX	6392846	intergenic	not near genes	chrX	6395278	intergenic	not near genes	chrX	6397710	intergenic	not near genes	chrX_23_6395001	chrX_6395001	RAL-850
3637	chrX	6429966	6429994	chrX	6435479	6435506	Rt1c	12	5510	14.5	18.0	16.2	0.7	5540	chrX	6429966	intron	CG42340 -	chrX	6432736	intron	CG42340 -	chrX	6435506	intron	CG42340 -	chrX_12_6430001	chrX_6430001	RAL-850
3638	chrX	6445264	6445331	chrX	6451072	6451139	297	7	5808	6.0	8.5	7.2	0.9	5875	chrX	6445264	intron	CG42340 -	chrX	6448202	intron	CG42340 -	chrX	6451139	intron	CG42340 -	chrX_7_6445001	chrX_6445001	RAL-850
3642	chrX	6562776	6562845	chrX	6571308	6571377	Tirant	25	8527	6.0	12.5	9.2	2.5	8601	chrX	6562776	intron	CG34417 +	chrX	6567076	intron	CG34417 +	chrX	6571377	intron	CG34417 +	chrX_25_6565001	chrX_6565001	RAL-850
3656	chrX	7023559	7023632	chrX	7030999	7031030	Tabor	29	7433	6.0	11.5	8.8	3.0	7471	chrX	7023559	intron	CG12541 -	chrX	7027294	intron	CG12541 -	chrX	7031030	intron	CG12541 -	chrX_29_7025001	chrX_7025001	RAL-850
3657	chrX	7125220	7125265	chrX	7134429	7134474	roo	19	9206	0.0	12.0	6.0	2.7	9254	chrX	7125220	intergenic	not near genes	chrX	7129847	intergenic	not near genes	chrX	7134474	intergenic	not near genes	chrX_19_7125001	chrX_7125001	RAL-850
3661	chrX	7480787	7480808	chrX	7482344	7482348	jockey	6	1548	4.5	14.5	9.5	0.6	1561	chrX	7480787	intergenic	not near genes	chrX	7481568	intergenic	not near genes	chrX	7482348	intergenic	not near genes	chrX_6_7480001	chrX_7480001	RAL-850
3664	chrX	7702867	7702880	chrX	7703356	7703369	jockey	8	489	21.5	10.5	16.0	0.5	502	chrX	7702867	intron	CHES-1-like -	chrX	7703118	intron	CHES-1-like -	chrX	7703369	intron	CHES-1-like -	chrX_8_7700001	chrX_7700001	RAL-850
3665	chrX	7702884	7702922	chrX	7703354	7703411	jockey	24	488	13.0	10.5	11.8	1.9	527	chrX	7702884	intron	CHES-1-like -	chrX	7703148	intron	CHES-1-like -	chrX	7703411	intron	CHES-1-like -	chrX_24_7700001	chrX_7700001	RAL-850
3669	chrX	7845684	7845754	chrX	7847225	7847295	hopper2	21	1541	9.0	7.5	8.2	2.3	1611	chrX	7845684	intergenic	not near genes	chrX	7846490	intergenic	not near genes	chrX	7847295	intergenic	not near genes	chrX_21_7845001	chrX_7845001	RAL-850
3671	chrX	8031391	8031452	chrX	8035750	8035790	Juan	31	4358	12.0	7.0	9.5	3.0	4399	chrX	8031391	intergenic	not near genes	chrX	8033590	intergenic	not near genes	chrX	8035790	3` UTR	CG2233 -	chrX_31_8030001	chrX_8030001	RAL-850
3672	chrX	8364797	8364868	chrX	8365244	8365315	BS	25	447	6.0	8.0	7.0	3.1	518	chrX	8364797	intron	nAChRalpha3 -	chrX	8365056	intron	nAChRalpha3 -	chrX	8365315	intron	nAChRalpha3 -	chrX_25_8365001	chrX_8365001	RAL-850
3688	chrX	8922289	8922353	chrX	8922773	8922837	jockey	18	479	12.0	13.0	12.5	1.3	548	chrX	8922289	intron	rdgA +	chrX	8922563	intron	rdgA +	chrX	8922837	intron	rdgA +	chrX_18_8920001	chrX_8920001	RAL-850
3689	chrX	8948723	8948788	chrX	8956282	8956327	roo	21	7559	0.0	8.0	4.0	4.2	7604	chrX	8948723	intron	rdgA +	chrX	8952525	intron	rdgA +	chrX	8956327	intron	rdgA +	chrX_21_8950001	chrX_8950001	RAL-850
3702	chrX	9508097	9508157	chrX	9509665	9509725	jockey	23	1568	7.5	7.5	7.5	2.7	1628	chrX	9508097	intron	CG32700 -	chrX	9508911	intron	CG32700 -	chrX	9509725	intron	CG32700 -	chrX_23_9505001	chrX_9505001	RAL-850
3705	chrX	9575754	9575815	chrX	9576118	9576186	mdg3	22	370	14.5	9.5	12.0	1.7	432	chrX	9575754	intron,exon	CG32699 -,CG42395 -	chrX	9575970	intron,intron	CG32699 -,CG42395 -	chrX	9576186	intron,5` UTR	CG32699 -,CG42395 -	chrX_22_9575001	chrX_9575001	RAL-850
3716	chrX	10138173	10138239	chrX	10145727	10145793	412	20	7552	10.0	7.5	8.8	2.0	7620	chrX	10138173	intron,intron	RhoU +,CR44894 -	chrX	10141983	intron,intron	RhoU +,CR44894 -	chrX	10145793	intron,intron	RhoU +,CR44894 -	chrX_20_10140001	chrX_10140001	RAL-850
3724	chrX	10348776	10348807	chrX	10356391	10356414	springer	7	7612	6.0	7.0	6.5	0.9	7638	chrX	10348776	intergenic	snoRNA:U3:9B +	chrX	10352595	intergenic	not near genes	chrX	10356414	intergenic	l(1)G0289 -	chrX_7_10350001	chrX_10350001	RAL-850
3728	chrX	10550817	10550879	chrX	10552334	10552381	hobo	15	1511	9.5	8.5	9.0	1.5	1564	chrX	10550817	intron	spri -	chrX	10551599	intron	spri -	chrX	10552381	intron	spri -	chrX_15_10550001	chrX_10550001	RAL-850
3729	chrX	10686007	10686069	chrX	10691194	10691256	roo	25	5186	7.5	10.5	9.0	2.5	5249	chrX	10686007	intron	X11Lbeta +	chrX	10688632	intron	X11Lbeta +	chrX	10691256	intron	X11Lbeta +	chrX_25_10685001	chrX_10685001	RAL-850
3730	chrX	10772644	10772698	chrX	10772766	10772819	Tirant	18	125	6.5	5.5	6.0	2.6	175	chrX	10772644	intron	CG15211 +	chrX	10772732	intron	CG15211 +	chrX	10772819	intron	CG15211 +	chrX_18_10770001	chrX_10770001	RAL-850
3732	chrX	11095955	11096007	chrX	11103107	11103159	HMS-Beagle	7	7152	7.5	9.0	8.2	0.8	7204	chrX	11095955	intergenic	not near genes	chrX	11099557	intergenic	not near genes	chrX	11103159	intron	CG42249 +	chrX_7_11095001	chrX_11095001	RAL-850
3733	chrX	11184209	11184256	chrX	11189337	11189385	flea	5	5129	9.5	9.5	9.5	0.5	5176	chrX	11184209	intergenic	not near genes	chrX	11186797	intergenic	not near genes	chrX	11189385	intergenic	not near genes	chrX_5_11185001	chrX_11185001	RAL-850
3736	chrX	11268573	11268589	chrX	11270098	11270114	hopper2	5	1525	6.5	8.5	7.5	0.6	1541	chrX	11268573	intron	CG44422 -	chrX	11269344	intron	CG44422 -	chrX	11270114	intron	CG44422 -	chrX_5_11265001	chrX_11265001	RAL-850
3737	chrX	11312012	11312085	chrX	11319415	11319488	Stalker2	13	7399	6.0	8.5	7.2	1.6	7476	chrX	11312012	intergenic	not near genes	chrX	11315750	intergenic	not near genes	chrX	11319488	intergenic	not near genes	chrX_13_11315001	chrX_11315001	RAL-850
3740	chrX	11535010	11535044	chrX	11541530	11541564	Burdock	11	6519	12.0	7.5	9.8	1.0	6554	chrX	11535010	intron	Drak +	chrX	11538287	intron	Drak +	chrX	11541564	intron	Drak +	chrX_11_11535001	chrX_11535001	RAL-850
3743	chrX	11633371	11633441	chrX	11640475	11640545	297	29	7104	12.0	10.5	11.2	2.4	7174	chrX	11633371	intron	Ptp10D +	chrX	11636958	intron	Ptp10D +	chrX	11640545	intron	Ptp10D +	chrX_29_11635001	chrX_11635001	RAL-850
3744	chrX	11645068	11645117	chrX	11648287	11648336	NOF	13	3219	5.5	4.5	5.0	2.2	3268	chrX	11645068	intron	Ptp10D +	chrX	11646702	intron	Ptp10D +	chrX	11648336	intron	Ptp10D +	chrX_13_11645001	chrX_11645001	RAL-850
3753	chrX	12168104	12168139	chrX	12173590	12173631	I-element	10	5491	4.5	5.0	4.8	1.7	5527	chrX	12168104	intron	Ten-a +	chrX	12170868	intron	Ten-a +	chrX	12173631	intron	Ten-a +	chrX_10_12170001	chrX_12170001	RAL-850
3757	chrX	12301928	12301958	chrX	12303283	12303290	X-element	4	1342	9.5	8.5	9.0	0.4	1362	chrX	12301928	intron	Ten-a +	chrX	12302609	intron	Ten-a +	chrX	12303290	intron	Ten-a +	chrX_4_12300001	chrX_12300001	RAL-850
3775	chrX	12930548	12930599	chrX	12937714	12937765	HMS-Beagle	13	7165	10.0	15.5	12.8	0.9	7217	chrX	12930548	intron	fne +	chrX	12934156	intron	fne +	chrX	12937765	intron	fne +	chrX_13_12930001	chrX_12930001	RAL-850
3786	chrX	13401436	13401508	chrX	13401838	13401910	jockey	12	402	2.5	2.5	2.5	3.4	474	chrX	13401436	intergenic	CG1673 +,CG12725 -	chrX	13401673	intergenic	CG12725 -,CG1673 +	chrX	13401910	3` UTR	CG12725 -	chrX_12_13400001	chrX_13400001	RAL-850
3787	chrX	13429422	13429482	chrX	13430621	13430681	jockey	20	1199	8.5	7.5	8.0	2.2	1259	chrX	13429422	intergenic	not near genes	chrX	13430052	intergenic	not near genes	chrX	13430681	intergenic	not near genes	chrX_20_13430001	chrX_13430001	RAL-850
3790	chrX	13463608	13463676	chrX	13469235	13469303	mdg3	13	5627	8.5	6.0	7.2	1.6	5695	chrX	13463608	intron	Neto +	chrX	13466456	intron	Neto +	chrX	13469303	intron	Neto +	chrX_13_13465001	chrX_13465001	RAL-850
3800	chrX	13937920	13938005	chrX	13941250	13941305	I-element	10	3320	0.5	4.5	2.5	2.9	3385	chrX	13937920	intron	mamo -	chrX	13939612	intron	mamo -	chrX	13941305	intron	mamo -	chrX_10_13935001	chrX_13935001	RAL-850
3803	chrX	14030705	14030724	chrX	14035342	14035361	copia	8	4637	9.0	5.5	7.2	1.0	4656	chrX	14030705	intergenic	not near genes	chrX	14033033	intergenic	not near genes	chrX	14035361	intergenic	not near genes	chrX_8_14030001	chrX_14030001	RAL-850
3804	chrX	14104996	14105050	chrX	14114173	14114231	roo	25	9195	7.0	4.0	5.5	3.8	9235	chrX	14104996	intergenic	not near genes	chrX	14109614	intergenic	not near genes	chrX	14114231	5` UTR	CR44657 +	chrX_25_14105001	chrX_14105001	RAL-850
3806	chrX	14157549	14157617	chrX	14163256	14163324	297	5	5707	4.0	5.5	4.8	0.9	5775	chrX	14157549	intergenic	not near genes	chrX	14160436	intergenic	not near genes	chrX	14163324	intergenic	not near genes	chrX_5_14160001	chrX_14160001	RAL-850
3816	chrX	14416269	14416320	chrX	14421087	14421138	F-element	12	4818	7.0	6.5	6.8	1.5	4869	chrX	14416269	intron	dpr8 +	chrX	14418704	intron	dpr8 +	chrX	14421138	intron	dpr8 +	chrX_12_14415001	chrX_14415001	RAL-850
3819	chrX	14636419	14636476	chrX	14641910	14641934	I-element	19	5487	10.0	9.0	9.5	1.8	5515	chrX	14636419	intron	NetA -	chrX	14639176	intron	NetA -	chrX	14641934	intron	NetA -	chrX_19_14635001	chrX_14635001	RAL-850
3822	chrX	14777992	14778047	chrX	14782839	14782894	Doc	21	4847	6.5	7.0	6.8	2.7	4902	chrX	14777992	intergenic	CG5347 +	chrX	14780443	intergenic	not near genes	chrX	14782894	intergenic	Ag5r2 -	chrX_21_14780001	chrX_14780001	RAL-850
3825	chrX	14818717	14818795	chrX	14823971	14823992	copia	29	5249	8.0	6.5	7.2	3.5	5275	chrX	14818717	intron	rut -	chrX	14821354	intron	rut -	chrX	14823992	intron	rut -	chrX_29_14820001	chrX_14820001	RAL-850
3829	chrX	14936822	14936883	chrX	14946129	14946190	roo	20	9307	4.5	7.0	5.8	2.9	9368	chrX	14936822	intron	pdgy -	chrX	14941506	intron	pdgy -	chrX	14946190	intron	pdgy -	chrX_20_14940001	chrX_14940001	RAL-850
3842	chrX	15273666	15273699	chrX	15274883	15274916	1360	15	1210	19.5	10.5	15.0	0.9	1250	chrX	15273666	intergenic	not near genes	chrX	15274291	intergenic	not near genes	chrX	15274916	intergenic	not near genes	chrX_15_15270001	chrX_15270001	RAL-850
3843	chrX	15273707	15273728	chrX	15274879	15274939	1360	7	1203	14.0	9.5	11.8	0.5	1232	chrX	15273707	intergenic	not near genes	chrX	15274323	intergenic	not near genes	chrX	15274939	intergenic	not near genes	chrX_7_15270001	chrX_15270001	RAL-850
3845	chrX	15326683	15326718	chrX	15326931	15326966	I-element	5	248	0.5	2.5	1.5	2.0	283	chrX	15326683	3` UTR	Top1 +	chrX	15326824	3` UTR	Top1 +	chrX	15326966	3` UTR	Top1 +	chrX_5_15325001	chrX_15325001	RAL-850
3846	chrX	15413022	15413028	chrX	15417365	15417379	Juan	7	4350	17.0	10.0	13.5	0.5	4357	chrX	15413022	intron	Cngl -	chrX	15415200	intron	Cngl -	chrX	15417379	intron	Cngl -	chrX_7_15415001	chrX_15415001	RAL-850
3847	chrX	15413032	15413072	chrX	15417359	15417401	Juan	17	4345	8.5	8.5	8.5	1.8	4369	chrX	15413032	intron	Cngl -	chrX	15415216	intron	Cngl -	chrX	15417401	intron	Cngl -	chrX_17_15415001	chrX_15415001	RAL-850
3848	chrX	15435690	15435697	chrX	15436173	15436180	rover	4	483	0.0	14.5	7.2	0.5	490	chrX	15435690	intron	Cngl -	chrX	15435935	intron	Cngl -	chrX	15436180	intron	Cngl -	chrX_4_15435001	chrX_15435001	RAL-850
3861	chrX	16222738	16222804	chrX	16231138	16231204	roo	19	8399	3.5	3.5	3.5	4.2	8466	chrX	16222738	intergenic	not near genes	chrX	16226971	intergenic	not near genes	chrX	16231204	intergenic	not near genes	chrX_19_16225001	chrX_16225001	RAL-850
3865	chrX	16340626	16340689	chrX	16349833	16349896	roo	23	9207	8.5	4.5	6.5	3.1	9270	chrX	16340626	intergenic	Dsp1 +	chrX	16345261	intergenic	not near genes	chrX	16349896	intergenic	sl +	chrX_23_16345001	chrX_16345001	RAL-850
3866	chrX	16492602	16492677	chrX	16498229	16498279	mdg3	23	5626	8.5	9.5	9.0	2.3	5677	chrX	16492602	intron	para -	chrX	16495440	intron	para -	chrX	16498279	exon	para -	chrX_23_16495001	chrX_16495001	RAL-850
3882	chrX	16935964	16936007	chrX	16936432	16936475	jockey	15	468	12.5	6.5	9.5	1.4	511	chrX	16935964	intron	CG4928 +	chrX	16936220	intron	CG4928 +	chrX	16936475	intron	CG4928 +	chrX_15_16935001	chrX_16935001	RAL-850
3884	chrX	17057894	17057948	chrX	17058185	17058239	pogo	5	291	2.5	5.0	3.8	1.0	345	chrX	17057894	intron	CG45002 -	chrX	17058066	intron	CG45002 -	chrX	17058239	intron	CG45002 -	chrX_5_17055001	chrX_17055001	RAL-850
3887	chrX	17195167	17195191	chrX	17200302	17200325	flea	4	5134	11.5	6.0	8.8	0.4	5158	chrX	17195167	3` UTR	baz +	chrX	17197746	3` UTR	baz +	chrX	17200325	3` UTR	baz +	chrX_4_17195001	chrX_17195001	RAL-850
3888	chrX	17195198	17195231	chrX	17200299	17200365	flea	10	5130	8.0	4.5	6.2	1.4	5167	chrX	17195198	3` UTR	baz +	chrX	17197782	3` UTR	baz +	chrX	17200365	3` UTR	baz +	chrX_10_17195001	chrX_17195001	RAL-850
3893	chrX	17431314	17431335	chrX	17431705	17431726	jockey	4	389	12.0	7.5	9.8	0.4	412	chrX	17431314	intron	CG12994 -	chrX	17431520	intron	CG12994 -	chrX	17431726	intron	CG12994 -	chrX_4_17430001	chrX_17430001	RAL-850
3899	chrX	17792771	17792808	chrX	17796392	17796459	flea	15	3641	10.0	6.0	8.0	1.7	3688	chrX	17792771	intron	OdsH +	chrX	17794615	intron	OdsH +	chrX	17796459	intron	OdsH +	chrX_15_17790001	chrX_17790001	RAL-850
3908	chrX	18194025	18194090	chrX	18194610	18194675	BS	36	585	13.0	6.5	9.8	3.3	650	chrX	18194025	intron	Frq2 +	chrX	18194350	intron	Frq2 +	chrX	18194675	intron	Frq2 +	chrX_36_18190001	chrX_18190001	RAL-850
3914	chrX	18429454	18429465	chrX	18434815	18434826	Transpac	8	5360	20.0	11.5	15.8	0.5	5372	chrX	18429454	intergenic	not near genes	chrX	18432140	intergenic	not near genes	chrX	18434826	intergenic	not near genes	chrX_8_18430001	chrX_18430001	RAL-850
3915	chrX	18429466	18429517	chrX	18434807	18434878	Transpac	11	5359	6.0	10.0	8.0	1.2	5412	chrX	18429466	intergenic	not near genes	chrX	18432172	intergenic	not near genes	chrX	18434878	intergenic	not near genes	chrX_11_18430001	chrX_18430001	RAL-850
3929	chrX	18754301	18754341	chrX	18758018	18758041	297	9	3713	4.0	11.0	7.5	1.1	3740	chrX	18754301	intergenic	not near genes	chrX	18756171	intergenic	not near genes	chrX	18758041	intergenic	not near genes	chrX_9_18755001	chrX_18755001	RAL-850
3932	chrX	18957029	18957088	chrX	18965742	18965784	roo	12	8712	7.5	4.0	5.8	1.8	8755	chrX	18957029	intron	CG43759 +	chrX	18961406	intron	CG43759 +	chrX	18965784	intron	CG43759 +	chrX_12_18960001	chrX_18960001	RAL-850
3938	chrX	19060366	19060428	chrX	19065200	19065262	Doc	15	4833	5.5	13.0	9.2	1.5	4896	chrX	19060366	intron	CG14190 +	chrX	19062814	intron	CG14190 +	chrX	19065262	intron	CG14190 +	chrX_15_19060001	chrX_19060001	RAL-850
3947	chrX	19136505	19136582	chrX	19143475	19143526	412	24	6965	9.0	1.5	5.2	3.9	7021	chrX	19136505	intergenic	not near genes	chrX	19140016	intergenic	not near genes	chrX	19143526	3` UTR	RhoGAP18B -	chrX_24_19140001	chrX_19140001	RAL-850
3950	chrX	19356951	19357019	chrX	19358441	19358528	NOF	15	1503	6.5	0.5	3.5	3.3	1577	chrX	19356951	intron	kek5 +	chrX	19357740	intron	kek5 +	chrX	19358528	intron	kek5 +	chrX_15_19355001	chrX_19355001	RAL-850
3951	chrX	19380113	19380181	chrX	19380404	19380471	pogo	29	290	12.0	6.0	9.0	2.9	358	chrX	19380113	intron	kek5 +	chrX	19380292	intron	kek5 +	chrX	19380471	intron	kek5 +	chrX_29_19380001	chrX_19380001	RAL-850
3955	chrX	19472097	19472109	chrX	19472701	19472729	jockey	7	617	12.0	10.5	11.2	0.6	632	chrX	19472097	intergenic	kek5 +	chrX	19472413	intergenic	kek5 +	chrX	19472729	intergenic	not near genes	chrX_7_19470001	chrX_19470001	RAL-850
3956	chrX	19472112	19472123	chrX	19472694	19472742	jockey	7	612	9.0	8.0	8.5	0.7	630	chrX	19472112	intergenic	kek5 +	chrX	19472427	intergenic	not near genes	chrX	19472742	intergenic	not near genes	chrX_7_19470001	chrX_19470001	RAL-850
3957	chrX	19472125	19472153	chrX	19472692	19472747	jockey	9	596	5.0	7.5	6.2	1.2	622	chrX	19472125	intergenic	kek5 +	chrX	19472436	intergenic	not near genes	chrX	19472747	intergenic	not near genes	chrX_9_19470001	chrX_19470001	RAL-850
3960	chrX	19710032	19710035	chrX	19711867	19711871	S-element	4	1836	20.5	14.0	17.2	0.2	1839	chrX	19710032	intron	meso18E -	chrX	19710952	intron	meso18E -	chrX	19711871	intron	meso18E -	chrX_4_19710001	chrX_19710001	RAL-850
3961	chrX	19710036	19710094	chrX	19711861	19711930	S-element	27	1832	7.0	12.0	9.5	2.6	1894	chrX	19710036	intron	meso18E -	chrX	19710983	intron	meso18E -	chrX	19711930	intron	meso18E -	chrX_27_19710001	chrX_19710001	RAL-850
3965	chrX	19797309	19797336	chrX	19804672	19804699	Stalker4	16	7360	16.0	9.5	12.8	1.2	7390	chrX	19797309	intergenic	not near genes	chrX	19801004	intergenic	not near genes	chrX	19804699	intergenic	not near genes	chrX_16_19800001	chrX_19800001	RAL-850
3984	chrX	20144442	20144455	chrX	21085287	21085300	INE-1	8	940845	11.5	36.5	24.0	0.3	940858	chrX	20144442	intergenic	not near genes	chrX	20614871	intron	RunxA -	chrX	21085300	intergenic	not near genes	chrX_8_20610001	chrX_20610001	RAL-850
3995	chrX	20504086	20504153	chrX	20505657	20505704	transib2	19	1568	7.5	8.5	8.0	2.1	1618	chrX	20504086	intron	RhoGAP19D -	chrX	20504895	intron	RhoGAP19D -	chrX	20505704	intron	RhoGAP19D -	chrX_19_20500001	chrX_20500001	RAL-850
4004	chrX	20836676	20836695	chrX	20844328	20844347	roo	8	7652	7.5	5.5	6.5	1.1	7671	chrX	20836676	intron	shakB -	chrX	20840512	intron	shakB -	chrX	20844347	intron	shakB -	chrX_8_20840001	chrX_20840001	RAL-850
4005	chrX	20836698	20836740	chrX	20844326	20844392	roo	13	7650	3.5	5.0	4.2	2.5	7694	chrX	20836698	intron	shakB -	chrX	20840545	intron	shakB -	chrX	20844392	intron	shakB -	chrX_13_20840001	chrX_20840001	RAL-850
4007	chrX	20940681	20940735	chrX	20942200	20942234	hobo	13	1516	10.5	6.0	8.2	1.4	1553	chrX	20940681	intergenic	not near genes	chrX	20941458	intergenic	not near genes	chrX	20942234	intergenic	not near genes	chrX_13_20940001	chrX_20940001	RAL-850
4008	chrX	20956924	20956951	chrX	20962419	20962446	I-element	12	5495	0.0	3.5	1.8	4.3	5522	chrX	20956924	intergenic	not near genes	chrX	20959685	intergenic	not near genes	chrX	20962446	intergenic	Ser6 -	chrX_12_20955001	chrX_20955001	RAL-850
4020	chrX	21086092	21086150	chrX	21087171	21087229	jockey	18	1079	7.5	12.5	10.0	1.6	1137	chrX	21086092	intergenic	not near genes	chrX	21086660	intergenic	not near genes	chrX	21087229	intergenic	not near genes	chrX_18_21085001	chrX_21085001	RAL-850
4035	chrX	21458655	21458712	chrX	21464141	21464198	Ivk	20	5485	11.5	7.0	9.2	2.0	5543	chrX	21458655	intergenic	not near genes	chrX	21461426	intergenic	not near genes	chrX	21464198	intergenic	not near genes	chrX_20_21460001	chrX_21460001	RAL-850
4036	chrX	21595523	21595561	chrX	21598646	21598684	micropia	18	3123	5.5	8.5	7.0	2.2	3161	chrX	21595523	intergenic	not near genes	chrX	21597104	intergenic	not near genes	chrX	21598684	intergenic	not near genes	chrX_18_21595001	chrX_21595001	RAL-850
4043	chrX	22522589	22522660	chrX	22525459	22525530	NOF	13	2870	10.5	5.0	7.8	1.5	2941	chrX	22522589	intron	CG17600 +	chrX	22524060	intron	CG17600 +	chrX	22525530	intron	CG17600 +	chrX_13_22520001	chrX_22520001	RAL-850
4048	chrX	22620454	22620503	chrX	22626772	22626819	297	9	6318	5.5	7.5	6.5	1.2	6365	chrX	22620454	intron	Cda4 -	chrX	22623636	intron	Cda4 -	chrX	22626819	intron	Cda4 -	chrX_9_22620001	chrX_22620001	RAL-850
4051	chrX	22697462	22697512	chrX	22701809	22701859	Juan	25	4347	11.0	12.5	11.8	2.0	4397	chrX	22697462	intron	CR44997 +	chrX	22699660	intron	CR44997 +	chrX	22701859	intron	CR44997 +	chrX_25_22695001	chrX_22695001	RAL-850
4053	chrX	22771466	22771533	chrX	22774802	22774839	297	19	3336	6.0	5.0	5.5	2.9	3373	chrX	22771466	intron	CR44997 +	chrX	22773152	intron	CR44997 +	chrX	22774839	intron	CR44997 +	chrX_19_22770001	chrX_22770001	RAL-850
4062	chrX	22987078	22987121	chrX	22989771	22989830	Burdock	7	2707	4.5	6.0	5.2	1.1	2752	chrX	22987078	intron,intron	stnA -,stnB -	chrX	22988454	intron,intron	stnA -,stnB -	chrX	22989830	intron,intron	stnA -,stnB -	chrX_7_22985001	chrX_22985001	RAL-850
4064	chrX	22996269	22996333	chrX	23003551	23003615	roo	17	7281	8.0	12.5	10.2	1.5	7346	chrX	22996269	intron,intron	stnA -,stnB -	chrX	22999942	intron,intron	stnA -,stnB -	chrX	23003615	intron,intron	stnA -,stnB -	chrX_17_22995001	chrX_22995001	RAL-850
4065	chrX	23036341	23036408	chrX	23037792	23037859	pogo	22	1451	7.5	7.0	7.2	2.7	1518	chrX	23036341	intron	CG12061 +	chrX	23037100	intron	CG12061 +	chrX	23037859	intron	CG12061 +	chrX_22_23035001	chrX_23035001	RAL-850
4068	chrX	22967512	22967529	chrX	23154542	23154554	diver	4	187026	2.5	23.5	13.0	0.3	187042	chrX	22967512	intergenic	not near genes	chrX	23061033	intergenic	not near genes	chrX	23154554	intergenic	not near genes	chrX_4_23060001	chrX_23060001	RAL-850