SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47422 47479 chr2L 52577 52618 jockey 25 5154 11.5 12.5 12.0 1.9 5196 chr2L 47422 intron Cda5 - chr2L 50020 intron Cda5 - chr2L 52618 intron Cda5 - chr2L_25_50001 chr2L_50001 RAL-843 2 chr2L 263270 263282 chr2L 263466 263478 10 196 21.5 17.5 19.5 0.5 208 chr2L 263270 intron,3` UTR CG3645 -,CG17075 - chr2L 263374 intron,3` UTR CG3645 -,CG17075 - chr2L 263478 intron,3` UTR CG3645 -,CG17075 - chr2L_10_260001 chr2L_260001 RAL-843 3 chr2L 263283 263329 chr2L 263459 263515 26 194 7.5 15.0 11.2 2.1 232 chr2L 263283 intron,3` UTR CG3645 -,CG17075 - chr2L 263399 intron,3` UTR CG3645 -,CG17075 - chr2L 263515 intron,3` UTR CG3645 -,CG17075 - chr2L_26_260001 chr2L_260001 RAL-843 4 chr2L 263067 263141 chr2L 267639 267713 21 4572 46.0 58.5 52.2 0.4 4646 chr2L 263067 intron,3` UTR CG3645 -,CG17075 - chr2L 265390 intron,exon CG3645 -,CG17075 - chr2L 267713 intron CG3645 - chr2L_21_265001 chr2L_265001 RAL-843 5 chr2L 347845 347911 chr2L 355395 355461 blood 22 7550 11.0 11.0 11.0 1.8 7616 chr2L 347845 3` UTR Plc21C + chr2L 351653 intron Plc21C + chr2L 355461 3` UTR Plc21C + chr2L_22_350001 chr2L_350001 RAL-843 6 chr2L 395711 395772 chr2L 395837 395884 26 122 8.5 10.5 9.5 2.5 173 chr2L 395711 intergenic CR43718 + chr2L 395798 intergenic CR43718 + chr2L 395884 intergenic CR43718 + chr2L_26_395001 chr2L_395001 RAL-843 7 chr2L 467318 467354 chr2L 467467 467503 13 147 22.5 25.5 24.0 0.5 185 chr2L 467318 intron CG4297 - chr2L 467410 intron CG4297 - chr2L 467503 intron CG4297 - chr2L_13_465001 chr2L_465001 RAL-843 8 chr2L 544783 544854 chr2L 544916 544987 16 133 7.5 11.5 9.5 1.5 204 chr2L 544783 intergenic Spp -,Ets21C -,nAChRbeta3 + chr2L 544885 intergenic Ets21C -,Spp -,nAChRbeta3 + chr2L 544987 3` UTR Ets21C - chr2L_16_540001 chr2L_540001 RAL-843 9 chr2L 590577 590599 chr2L 590728 590739 6 149 19.5 12.0 15.8 0.4 162 chr2L 590577 intron Gsc - chr2L 590658 intron Gsc - chr2L 590739 intron Gsc - chr2L_6_590001 chr2L_590001 RAL-843 10 chr2L 590600 590614 chr2L 590724 590765 6 145 15.5 10.0 12.8 0.4 165 chr2L 590600 intron Gsc - chr2L 590682 intron Gsc - chr2L 590765 intron Gsc - chr2L_6_590001 chr2L_590001 RAL-843 11 chr2L 590616 590648 chr2L 590722 590791 10 138 5.0 9.5 7.2 1.2 175 chr2L 590616 intron Gsc - chr2L 590704 intron Gsc - chr2L 590791 intron Gsc - chr2L_10_590001 chr2L_590001 RAL-843 12 chr2L 597169 597180 chr2L 597280 597310 7 121 45.0 42.5 43.8 0.2 141 chr2L 597169 intergenic not near genes chr2L 597240 intergenic not near genes chr2L 597310 intergenic not near genes chr2L_7_595001 chr2L_595001 RAL-843 13 chr2L 632661 632722 chr2L 632791 632852 12 123 7.5 5.5 6.5 1.6 191 chr2L 632661 intergenic not near genes chr2L 632756 intergenic not near genes chr2L 632852 intergenic not near genes chr2L_12_630001 chr2L_630001 RAL-843 14 chr2L 668387 668462 chr2L 668517 668593 25 125 7.0 4.5 5.8 3.7 206 chr2L 668387 intron ds - chr2L 668490 intron ds - chr2L 668593 intron ds - chr2L_25_665001 chr2L_665001 RAL-843 15 chr2L 686915 686932 chr2L 696005 696022 roo 10 9090 11.5 11.0 11.2 0.8 9107 chr2L 686915 intron ds - chr2L 691468 intron ds - chr2L 696022 intron ds - chr2L_10_690001 chr2L_690001 RAL-843 16 chr2L 686933 686939 chr2L 695980 696029 roo 5 9081 10.0 10.0 10.0 0.5 9096 chr2L 686933 intron ds - chr2L 691481 intron ds - chr2L 696029 intron ds - chr2L_5_690001 chr2L_690001 RAL-843 17 chr2L 700999 701068 chr2L 701330 701399 26 330 7.0 5.5 6.2 3.6 400 chr2L 700999 intron ds - chr2L 701199 intron ds - chr2L 701399 intron ds - chr2L_26_700001 chr2L_700001 RAL-843 18 chr2L 763482 763548 chr2L 763617 763658 28 123 8.5 9.5 9.0 2.8 176 chr2L 763482 intergenic not near genes chr2L 763570 intergenic not near genes chr2L 763658 intergenic not near genes chr2L_28_760001 chr2L_760001 RAL-843 19 chr2L 770423 770483 chr2L 772254 772288 Bari1 22 1823 7.0 7.0 7.0 2.8 1865 chr2L 770423 intergenic not near genes chr2L 771356 intergenic not near genes chr2L 772288 intergenic CR44614 + chr2L_22_770001 chr2L_770001 RAL-843 20 chr2L 877803 877845 chr2L 877934 877976 14 130 12.0 9.0 10.5 1.2 173 chr2L 877803 3` UTR,exon CG15824 -,ninaA + chr2L 877890 3` UTR,intron CG15824 -,ninaA + chr2L 877976 3` UTR,exon CG15824 -,ninaA + chr2L_14_875001 chr2L_875001 RAL-843 21 chr2L 877853 877877 chr2L 877927 877985 10 117 5.0 5.5 5.2 1.6 132 chr2L 877853 3` UTR,exon CG15824 -,ninaA + chr2L 877919 3` UTR,intron CG15824 -,ninaA + chr2L 877985 3` UTR,exon CG15824 -,ninaA + chr2L_10_875001 chr2L_875001 RAL-843 22 chr2L 922415 922491 chr2L 922546 922622 30 129 6.0 8.0 7.0 3.8 207 chr2L 922415 intergenic CG4341 + chr2L 922518 intergenic CG4341 + chr2L 922622 intergenic CG4341 + chr2L_30_920001 chr2L_920001 RAL-843 23 chr2L 936497 936534 chr2L 936673 936712 17 176 14.5 0.0 7.2 2.1 215 chr2L 936497 intron CG4341 + chr2L 936604 intron CG4341 + chr2L 936712 intron CG4341 + chr2L_17_935001 chr2L_935001 RAL-843 24 chr2L 975215 975222 chr2L 975366 975412 4 178 1.5 2.5 2.0 1.3 197 chr2L 975215 intergenic not near genes chr2L 975314 intergenic not near genes chr2L 975412 intergenic not near genes chr2L_4_975001 chr2L_975001 RAL-843 25 chr2L 976833 976904 chr2L 984519 984590 roo 24 7685 7.0 10.0 8.5 2.5 7757 chr2L 976833 intergenic not near genes chr2L 980712 intergenic not near genes chr2L 984590 intergenic not near genes chr2L_24_980001 chr2L_980001 RAL-843 26 chr2L 996716 996743 chr2L 1005829 1005888 roo 7 9140 5.0 4.0 4.5 1.3 9172 chr2L 996716 intergenic not near genes chr2L 1001302 intergenic not near genes chr2L 1005888 intergenic not near genes chr2L_7_1000001 chr2L_1000001 RAL-843 27 chr2L 1025070 1025115 chr2L 1025200 1025245 17 126 15.0 6.5 10.8 1.4 175 chr2L 1025070 intron IA-2 - chr2L 1025158 intron IA-2 - chr2L 1025245 intron IA-2 - chr2L_17_1025001 chr2L_1025001 RAL-843 28 chr2L 1026154 1026180 chr2L 1026273 1026306 8 124 13.5 7.5 10.5 0.7 152 chr2L 1026154 intron,3` UTR IA-2 -,CG4375 - chr2L 1026230 intron,3` UTR IA-2 -,CG4375 - chr2L 1026306 intron,exon IA-2 -,CG4375 - chr2L_8_1025001 chr2L_1025001 RAL-843 29 chr2L 1035515 1035594 chr2L 1035642 1035683 35 125 8.5 8.5 8.5 3.7 168 chr2L 1035515 intron IA-2 - chr2L 1035599 intron IA-2 - chr2L 1035683 intron IA-2 - chr2L_35_1035001 chr2L_1035001 RAL-843 30 chr2L 1042576 1042582 chr2L 1042703 1042709 5 127 3.5 0.0 1.8 1.8 133 chr2L 1042576 intron IA-2 - chr2L 1042642 intron IA-2 - chr2L 1042709 intron IA-2 - chr2L_5_1040001 chr2L_1040001 RAL-843 31 chr2L 1057444 1057519 chr2L 1057577 1057597 10 122 1.0 7.5 4.2 1.9 153 chr2L 1057444 intron S - chr2L 1057520 intron S - chr2L 1057597 intron S - chr2L_10_1055001 chr2L_1055001 RAL-843 32 chr2L 1091740 1091742 chr2L 3185199 3185201 4 2093459 33.0 9.5 21.2 0.2 2093461 chr2L 1091740 intron CG4629 - chr2L 2138470 intron tho2 - chr2L 3185201 intron CG34393 - chr2L_4_2135001 chr2L_2135001 RAL-843 33 chr2L 1126642 1126703 chr2L 1126748 1126803 31 122 4.5 11.0 7.8 3.5 161 chr2L 1126642 intron Pino - chr2L 1126722 intron Pino - chr2L 1126803 intron Pino - chr2L_31_1125001 chr2L_1125001 RAL-843 34 chr2L 1156839 1156892 chr2L 1156968 1157047 27 153 5.0 10.5 7.8 3.1 208 chr2L 1156839 intron capt - chr2L 1156943 intron capt - chr2L 1157047 intron capt - chr2L_27_1155001 chr2L_1155001 RAL-843 35 chr2L 1199822 1199866 chr2L 1199980 1200024 9 158 2.0 13.5 7.8 1.0 202 chr2L 1199822 3` UTR CG43348 + chr2L 1199923 3` UTR CG43348 + chr2L 1200024 intergenic CG43348 +,CG43349 + chr2L_9_1195001 chr2L_1195001 RAL-843 36 chr2L 1220082 1220152 chr2L 1227598 1227668 blood 30 7516 11.5 7.5 9.5 2.9 7586 chr2L 1220082 intron CG42329 + chr2L 1223875 intron CG42329 + chr2L 1227668 intron CG42329 + chr2L_30_1220001 chr2L_1220001 RAL-843 37 chr2L 1261181 1261258 chr2L 1261312 1261391 30 132 7.0 3.5 5.2 4.8 210 chr2L 1261181 intron robo3 + chr2L 1261286 intron robo3 + chr2L 1261391 intron robo3 + chr2L_30_1260001 chr2L_1260001 RAL-843 38 chr2L 1570643 1570710 chr2L 1573565 1573632 F-element 26 2920 8.0 9.0 8.5 2.7 2989 chr2L 1570643 intron haf + chr2L 1572138 intron haf + chr2L 1573632 intron haf + chr2L_26_1570001 chr2L_1570001 RAL-843 39 chr2L 1634726 1634760 chr2L 1634859 1634902 9 141 15.0 10.5 12.8 0.7 176 chr2L 1634726 intergenic not near genes chr2L 1634814 intergenic not near genes chr2L 1634902 intergenic not near genes chr2L_9_1630001 chr2L_1630001 RAL-843 40 chr2L 1678937 1679002 chr2L 1686452 1686515 blood 22 7514 6.5 8.5 7.5 2.6 7578 chr2L 1678937 intron chinmo + chr2L 1682726 intron chinmo + chr2L 1686515 intron chinmo + chr2L_22_1680001 chr2L_1680001 RAL-843 41 chr2L 1711311 1711385 chr2L 1711685 1711744 mdg3 25 369 7.0 7.0 7.0 3.1 433 chr2L 1711311 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711528 3` UTR frtz - chr2L 1711744 3` UTR frtz - chr2L_25_1710001 chr2L_1710001 RAL-843 42 chr2L 1716040 1716114 chr2L 1716174 1716253 20 136 2.0 2.5 2.2 6.2 213 chr2L 1716040 intergenic frtz -,Rim2 - chr2L 1716146 intergenic Rim2 -,frtz - chr2L 1716253 3` UTR Rim2 - chr2L_20_1715001 chr2L_1715001 RAL-843 43 chr2L 1814364 1814378 chr2L 1814490 1814514 8 133 18.5 12.0 15.2 0.5 150 chr2L 1814364 intergenic not near genes chr2L 1814439 intergenic not near genes chr2L 1814514 intergenic not near genes chr2L_8_1810001 chr2L_1810001 RAL-843 44 chr2L 1828365 1828432 chr2L 1828499 1828514 20 129 7.0 10.5 8.8 2.0 149 chr2L 1828365 intergenic not near genes chr2L 1828440 intergenic not near genes chr2L 1828514 intergenic not near genes chr2L_20_1825001 chr2L_1825001 RAL-843 45 chr2L 1856201 1856255 chr2L 1856370 1856404 13 165 6.0 7.0 6.5 1.7 203 chr2L 1856201 intron wry + chr2L 1856302 intron wry + chr2L 1856404 intron wry + chr2L_13_1855001 chr2L_1855001 RAL-843 46 chr2L 1883308 1883322 chr2L 1883433 1883446 6 124 5.0 0.0 2.5 1.7 138 chr2L 1883308 intron CG15358 - chr2L 1883377 intron CG15358 - chr2L 1883446 intron CG15358 - chr2L_6_1880001 chr2L_1880001 RAL-843 47 chr2L 1883367 1883433 chr2L 1883999 1884063 16 629 0.0 2.0 1.0 8.0 696 chr2L 1883367 intron CG15358 - chr2L 1883715 intron CG15358 - chr2L 1884063 intergenic CG15358 - chr2L_16_1880001 chr2L_1880001 RAL-843 48 chr2L 1883441 1883444 chr2L 1884071 1884074 4 630 0.0 4.0 2.0 1.3 633 chr2L 1883441 intron CG15358 - chr2L 1883758 exon CG15358 - chr2L 1884074 intergenic CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-843 49 chr2L 1915298 1915374 chr2L 1915777 1915805 24 476 7.0 11.5 9.2 2.4 507 chr2L 1915298 intron CG7337 + chr2L 1915552 intron CG7337 + chr2L 1915805 intron CG7337 + chr2L_24_1915001 chr2L_1915001 RAL-843 50 chr2L 1957879 1957946 chr2L 1958011 1958077 24 129 9.0 7.0 8.0 2.7 198 chr2L 1957879 intron erm - chr2L 1957978 intron erm - chr2L 1958077 intron erm - chr2L_24_1955001 chr2L_1955001 RAL-843 51 chr2L 1996887 1996896 chr2L 1997019 1997028 5 131 0.0 14.0 7.0 0.6 141 chr2L 1996887 intergenic CG33543 - chr2L 1996958 intergenic CG33543 - chr2L 1997028 intergenic CG33543 - chr2L_5_1995001 chr2L_1995001 RAL-843 52 chr2L 1996898 1996913 chr2L 1997016 1997045 8 130 0.0 13.5 6.8 1.0 147 chr2L 1996898 intergenic CG33543 - chr2L 1996972 intergenic CG33543 - chr2L 1997045 intergenic CG33543 - chr2L_8_1995001 chr2L_1995001 RAL-843 53 chr2L 1999519 1999569 chr2L 1999726 1999761 10 210 9.0 8.0 8.5 1.1 242 chr2L 1999519 intron CG33543 - chr2L 1999640 intron CG33543 - chr2L 1999761 intron CG33543 - chr2L_10_1995001 chr2L_1995001 RAL-843 54 chr2L 2007834 2007862 chr2L 2007992 2008020 12 158 8.0 17.0 12.5 0.9 186 chr2L 2007834 intergenic CR45712 + chr2L 2007927 intergenic CR45712 +,Nplp4 + chr2L 2008020 intergenic CR45712 +,Nplp4 + chr2L_12_2005001 chr2L_2005001 RAL-843 55 chr2L 2068568 2068640 chr2L 2068715 2068784 23 143 6.5 8.0 7.2 2.8 216 chr2L 2068568 intron dpr3 - chr2L 2068676 intron dpr3 - chr2L 2068784 intron dpr3 - chr2L_23_2065001 chr2L_2065001 RAL-843 56 chr2L 2073317 2073356 chr2L 2073433 2073464 17 118 13.5 26.5 20.0 0.8 147 chr2L 2073317 intron dpr3 - chr2L 2073390 intron dpr3 - chr2L 2073464 intron dpr3 - chr2L_17_2070001 chr2L_2070001 RAL-843 57 chr2L 2075489 2075541 chr2L 2075602 2075676 31 133 6.5 12.5 9.5 3.0 187 chr2L 2075489 intron dpr3 - chr2L 2075582 intron dpr3 - chr2L 2075676 intron dpr3 - chr2L_31_2075001 chr2L_2075001 RAL-843 58 chr2L 2085659 2085732 chr2L 2086048 2086121 24 389 0.0 4.0 2.0 8.0 462 chr2L 2085659 intron dpr3 - chr2L 2085890 intron dpr3 - chr2L 2086121 intron dpr3 - chr2L_24_2085001 chr2L_2085001 RAL-843 59 chr2L 2100376 2100393 chr2L 2109549 2109594 roo 9 9185 13.0 17.0 15.0 0.6 9218 chr2L 2100376 intron dpr3 - chr2L 2104985 intron dpr3 - chr2L 2109594 intron dpr3 - chr2L_9_2100001 chr2L_2100001 RAL-843 60 chr2L 2100398 2100403 chr2L 2109548 2109551 roo 4 9150 11.0 17.0 14.0 0.3 9153 chr2L 2100398 intron dpr3 - chr2L 2104974 intron dpr3 - chr2L 2109551 intron dpr3 - chr2L_4_2100001 chr2L_2100001 RAL-843 61 chr2L 2112064 2112140 chr2L 2119776 2119827 opus 22 7704 5.5 7.0 6.2 3.1 7763 chr2L 2112064 intergenic not near genes chr2L 2115946 intergenic not near genes chr2L 2119827 intergenic not near genes chr2L_22_2115001 chr2L_2115001 RAL-843 62 chr2L 2236148 2236220 chr2L 2236277 2236283 25 123 8.0 8.5 8.2 2.7 135 chr2L 2236148 intron Sec24CD - chr2L 2236216 intron Sec24CD - chr2L 2236283 intron Sec24CD - chr2L_25_2235001 chr2L_2235001 RAL-843 63 chr2L 2250371 2250444 chr2L 2251188 2251221 20 813 9.0 0.0 4.5 3.6 850 chr2L 2250371 intergenic Ser12 - chr2L 2250796 exon Ser12 - chr2L 2251221 exon Ser12 - chr2L_20_2250001 chr2L_2250001 RAL-843 64 chr2L 2256421 2256465 chr2L 2256551 2256595 17 130 5.0 10.0 7.5 2.0 174 chr2L 2256421 intergenic not near genes chr2L 2256508 intergenic not near genes chr2L 2256595 intergenic not near genes chr2L_17_2255001 chr2L_2255001 RAL-843 65 chr2L 2260764 2260807 chr2L 2260900 2260943 16 134 9.5 10.0 9.8 1.5 179 chr2L 2260764 intergenic not near genes chr2L 2260854 intergenic not near genes chr2L 2260943 intergenic not near genes chr2L_16_2260001 chr2L_2260001 RAL-843 66 chr2L 2260816 2260818 chr2L 2260889 2260933 4 115 9.0 6.5 7.8 0.5 117 chr2L 2260816 intergenic not near genes chr2L 2260874 intergenic not near genes chr2L 2260933 intergenic not near genes chr2L_4_2260001 chr2L_2260001 RAL-843 67 chr2L 2293995 2294073 chr2L 2299250 2299304 copia 21 5239 9.0 8.5 8.8 2.1 5309 chr2L 2293995 intergenic not near genes chr2L 2296650 intergenic not near genes chr2L 2299304 intergenic not near genes chr2L_21_2295001 chr2L_2295001 RAL-843 68 chr2L 2311024 2311092 chr2L 2311170 2311238 21 144 5.0 9.5 7.2 2.6 214 chr2L 2311024 intron CG9967 - chr2L 2311131 intron CG9967 - chr2L 2311238 intron CG9967 - chr2L_21_2310001 chr2L_2310001 RAL-843 69 chr2L 2317072 2317129 chr2L 2317293 2317350 12 221 42.0 43.0 42.5 0.3 278 chr2L 2317072 intron,intron CG9967 -,eys + chr2L 2317211 intron,intron CG9967 -,eys + chr2L 2317350 intron,intron CG9967 -,eys + chr2L_12_2315001 chr2L_2315001 RAL-843 70 chr2L 2372316 2372370 chr2L 2372452 2372506 17 134 8.5 8.5 8.5 1.8 190 chr2L 2372316 intergenic CG3609 - chr2L 2372411 intergenic CG3609 - chr2L 2372506 3` UTR CG3609 - chr2L_17_2370001 chr2L_2370001 RAL-843 71 chr2L 2396249 2396289 chr2L 2396377 2396417 11 128 6.0 4.5 5.2 1.8 168 chr2L 2396249 intron VGlut + chr2L 2396333 intron VGlut + chr2L 2396417 intron VGlut + chr2L_11_2395001 chr2L_2395001 RAL-843 72 chr2L 2428742 2428773 chr2L 2428891 2428922 20 148 23.0 12.5 17.8 1.1 180 chr2L 2428742 5` UTR dpp + chr2L 2428832 5` UTR dpp + chr2L 2428922 5` UTR dpp + chr2L_20_2425001 chr2L_2425001 RAL-843 73 chr2L 2428774 2428808 chr2L 2428883 2428957 18 140 13.5 10.5 12.0 1.4 183 chr2L 2428774 5` UTR dpp + chr2L 2428866 5` UTR dpp + chr2L 2428957 5` UTR dpp + chr2L_18_2425001 chr2L_2425001 RAL-843 74 chr2L 2449368 2449449 chr2L 2449589 2449670 31 214 5.0 4.5 4.8 5.3 302 chr2L 2449368 intron dpp + chr2L 2449519 intron dpp + chr2L 2449670 intron dpp + chr2L_31_2445001 chr2L_2445001 RAL-843 75 chr2L 2497595 2497616 chr2L 2497721 2497742 10 126 7.5 9.5 8.5 1.1 147 chr2L 2497595 3` UTR oaf + chr2L 2497668 3` UTR oaf + chr2L 2497742 3` UTR oaf + chr2L_10_2495001 chr2L_2495001 RAL-843 76 chr2L 2498146 2498207 chr2L 2498263 2498337 13 122 9.5 7.5 8.5 1.4 191 chr2L 2498146 3` UTR oaf + chr2L 2498242 3` UTR oaf + chr2L 2498337 3` UTR oaf + chr2L_13_2495001 chr2L_2495001 RAL-843 77 chr2L 2499902 2499945 chr2L 2500031 2500090 18 146 6.5 8.5 7.5 2.1 188 chr2L 2499902 intergenic not near genes chr2L 2499996 intergenic not near genes chr2L 2500090 intergenic not near genes chr2L_18_2495001 chr2L_2495001 RAL-843 78 chr2L 2509171 2509243 chr2L 2509304 2509376 22 128 8.5 8.5 8.5 2.3 205 chr2L 2509171 intergenic not near genes chr2L 2509274 intergenic not near genes chr2L 2509376 intergenic not near genes chr2L_22_2505001 chr2L_2505001 RAL-843 79 chr2L 2557199 2557213 chr2L 2557325 2557339 8 126 6.5 15.5 11.0 0.7 140 chr2L 2557199 intergenic not near genes chr2L 2557269 intergenic not near genes chr2L 2557339 intergenic not near genes chr2L_8_2555001 chr2L_2555001 RAL-843 80 chr2L 2563336 2563380 chr2L 2563464 2563508 9 127 11.0 9.0 10.0 0.8 172 chr2L 2563336 exon Cyp309a1 - chr2L 2563422 intron Cyp309a1 - chr2L 2563508 exon Cyp309a1 - chr2L_9_2560001 chr2L_2560001 RAL-843 81 chr2L 2565504 2565560 chr2L 2571627 2571683 297 19 6122 6.5 11.0 8.8 1.9 6179 chr2L 2565504 exon Cyp309a2 - chr2L 2568594 intron Cyp309a2 - chr2L 2571683 exon Cyp309a2 - chr2L_19_2565001 chr2L_2565001 RAL-843 82 chr2L 2596998 2597052 chr2L 2597153 2597207 16 155 5.0 6.5 5.8 2.4 209 chr2L 2596998 intergenic not near genes chr2L 2597102 intergenic not near genes chr2L 2597207 intergenic not near genes chr2L_16_2595001 chr2L_2595001 RAL-843 83 chr2L 2613343 2613417 chr2L 2613478 2613529 20 124 5.0 6.5 5.8 2.9 186 chr2L 2613343 intergenic not near genes chr2L 2613436 intergenic not near genes chr2L 2613529 intergenic not near genes chr2L_20_2610001 chr2L_2610001 RAL-843 84 chr2L 2617992 2618000 chr2L 2618121 2618129 4 129 19.5 4.5 12.0 0.3 137 chr2L 2617992 intergenic not near genes chr2L 2618060 intergenic not near genes chr2L 2618129 intergenic not near genes chr2L_4_2615001 chr2L_2615001 RAL-843 85 chr2L 2618004 2618051 chr2L 2618118 2618172 18 124 9.5 5.0 7.2 2.2 168 chr2L 2618004 intergenic not near genes chr2L 2618088 intergenic not near genes chr2L 2618172 intergenic not near genes chr2L_18_2615001 chr2L_2615001 RAL-843 86 chr2L 2661177 2661228 chr2L 2663045 2663096 I-element 15 1863 3.5 11.0 7.2 1.8 1919 chr2L 2661177 intergenic not near genes chr2L 2662136 intergenic not near genes chr2L 2663096 intergenic not near genes chr2L_15_2660001 chr2L_2660001 RAL-843 87 chr2L 2667593 2667649 chr2L 2667709 2667778 24 124 6.5 8.5 7.5 2.8 185 chr2L 2667593 intergenic not near genes chr2L 2667686 intergenic not near genes chr2L 2667778 intergenic not near genes chr2L_24_2665001 chr2L_2665001 RAL-843 88 chr2L 2669198 2669253 chr2L 2669370 2669425 7 171 8.5 0.0 4.2 1.3 227 chr2L 2669198 intergenic not near genes chr2L 2669312 intergenic not near genes chr2L 2669425 intergenic Gr23a + chr2L_7_2665001 chr2L_2665001 RAL-843 89 chr2L 2698806 2698891 chr2L 2698954 2699028 26 135 0.0 6.0 3.0 6.5 222 chr2L 2698806 intron CG31690 + chr2L 2698917 intron CG31690 + chr2L 2699028 intron CG31690 + chr2L_26_2695001 chr2L_2695001 RAL-843 90 chr2L 2703395 2703440 chr2L 2703529 2703557 19 131 9.5 14.0 11.8 1.5 162 chr2L 2703395 intron CG31690 + chr2L 2703476 intron CG31690 + chr2L 2703557 intron CG31690 + chr2L_19_2700001 chr2L_2700001 RAL-843 91 chr2L 2725125 2725164 chr2L 2725255 2725294 18 130 8.0 11.5 9.8 1.7 169 chr2L 2725125 intergenic not near genes chr2L 2725210 intergenic CG31689 + chr2L 2725294 intergenic CG31689 + chr2L_18_2725001 chr2L_2725001 RAL-843 92 chr2L 2772576 2772620 chr2L 2779208 2779252 297 12 6629 9.5 13.0 11.2 1.0 6676 chr2L 2772576 3` UTR Syt1 - chr2L 2775914 intron Syt1 - chr2L 2779252 3` UTR Syt1 - chr2L_12_2775001 chr2L_2775001 RAL-843 93 chr2L 2793900 2793967 chr2L 2794030 2794097 25 127 8.0 7.5 7.8 2.8 197 chr2L 2793900 5` UTR Syt1 - chr2L 2793998 intron Syt1 - chr2L 2794097 intron Syt1 - chr2L_25_2790001 chr2L_2790001 RAL-843 94 chr2L 2800557 2800612 chr2L 2800690 2800750 16 132 9.0 0.0 4.5 2.9 193 chr2L 2800557 intergenic not near genes chr2L 2800654 intergenic not near genes chr2L 2800750 intergenic not near genes chr2L_16_2800001 chr2L_2800001 RAL-843 95 chr2L 2873431 2873469 chr2L 2873559 2873597 9 128 0.5 14.0 7.2 1.1 166 chr2L 2873431 intron CG31694 - chr2L 2873514 intron CG31694 - chr2L 2873597 intron CG31694 - chr2L_9_2870001 chr2L_2870001 RAL-843 96 chr2L 2895642 2895716 chr2L 2895778 2895860 31 135 8.5 5.0 6.8 4.0 218 chr2L 2895642 intron lilli + chr2L 2895751 intron lilli + chr2L 2895860 intron lilli + chr2L_31_2895001 chr2L_2895001 RAL-843 97 chr2L 2933252 2933315 chr2L 2935481 2935544 pogo 22 2225 5.0 7.5 6.2 3.1 2292 chr2L 2933252 intron lilli + chr2L 2934398 intron lilli + chr2L 2935544 intron lilli + chr2L_22_2930001 chr2L_2930001 RAL-843 98 chr2L 2964262 2964302 chr2L 2964388 2964430 14 124 13.5 8.5 11.0 1.2 168 chr2L 2964262 3` UTR Rbp9 + chr2L 2964346 3` UTR Rbp9 + chr2L 2964430 3` UTR Rbp9 + chr2L_14_2960001 chr2L_2960001 RAL-843 99 chr2L 3072986 3073052 chr2L 3078239 3078305 copia 23 5253 11.5 11.5 11.5 1.8 5319 chr2L 3072986 intron toc - chr2L 3075646 intron toc - chr2L 3078305 intron toc - chr2L_23_3075001 chr2L_3075001 RAL-843 100 chr2L 3092593 3092662 chr2L 3093379 3093448 28 786 6.0 1.5 3.8 5.8 855 chr2L 3092593 intron toc - chr2L 3093020 intron toc - chr2L 3093448 intron toc - chr2L_28_3090001 chr2L_3090001 RAL-843 101 chr2L 3108820 3108896 chr2L 3108947 3109023 25 126 6.0 11.0 8.5 2.6 203 chr2L 3108820 exon toc - chr2L 3108922 intron toc - chr2L 3109023 intron toc - chr2L_25_3105001 chr2L_3105001 RAL-843 102 chr2L 3121935 3121999 chr2L 3122071 3122135 15 136 7.5 7.0 7.2 1.8 200 chr2L 3121935 intron toc - chr2L 3122035 intron toc - chr2L 3122135 intron toc - chr2L_15_3120001 chr2L_3120001 RAL-843 103 chr2L 3152443 3152521 chr2L 3152579 3152657 15 134 8.0 6.0 7.0 1.9 214 chr2L 3152443 intron Mad - chr2L 3152550 intron Mad - chr2L 3152657 intron Mad - chr2L_15_3150001 chr2L_3150001 RAL-843 104 chr2L 3172029 3172093 chr2L 3172172 3172226 20 138 11.5 12.5 12.0 1.5 197 chr2L 3172029 intergenic not near genes chr2L 3172128 intergenic not near genes chr2L 3172226 intergenic not near genes chr2L_20_3170001 chr2L_3170001 RAL-843 105 chr2L 3192162 3192178 chr2L 3192323 3192339 8 160 20.5 13.0 16.8 0.4 177 chr2L 3192162 exon CG34393 - chr2L 3192250 intron CG34393 - chr2L 3192339 intron CG34393 - chr2L_8_3190001 chr2L_3190001 RAL-843 106 chr2L 3192187 3192233 chr2L 3192322 3192394 19 159 7.0 13.0 10.0 1.7 207 chr2L 3192187 exon CG34393 - chr2L 3192290 intron CG34393 - chr2L 3192394 intron CG34393 - chr2L_19_3190001 chr2L_3190001 RAL-843 107 chr2L 3202690 3202742 chr2L 3210169 3210221 mdg1 22 7479 11.5 0.0 5.8 3.2 7531 chr2L 3202690 intergenic not near genes chr2L 3206456 intergenic not near genes chr2L 3210221 intergenic CR45336 + chr2L_22_3205001 chr2L_3205001 RAL-843 108 chr2L 3251466 3251517 chr2L 3259081 3259132 springer 17 7615 5.0 9.0 7.0 2.1 7666 chr2L 3251466 intergenic not near genes chr2L 3255299 intergenic not near genes chr2L 3259132 intergenic not near genes chr2L_17_3255001 chr2L_3255001 RAL-843 109 chr2L 3289040 3289102 chr2L 3289365 3289414 10 321 10.5 1.0 5.8 1.5 374 chr2L 3289040 intergenic CR44485 + chr2L 3289227 intergenic not near genes chr2L 3289414 intergenic not near genes chr2L_10_3285001 chr2L_3285001 RAL-843 110 chr2L 3291207 3291262 chr2L 3291337 3291392 16 129 7.0 11.5 9.2 1.6 185 chr2L 3291207 intergenic CG9664 - chr2L 3291300 3` UTR CG9664 - chr2L 3291392 3` UTR CG9664 - chr2L_16_3290001 chr2L_3290001 RAL-843 111 chr2L 3312572 3312646 chr2L 3312702 3312776 39 130 6.0 8.5 7.2 4.8 204 chr2L 3312572 intron CG3277 + chr2L 3312674 intron CG3277 + chr2L 3312776 intron CG3277 + chr2L_39_3310001 chr2L_3310001 RAL-843 112 chr2L 3366516 3366523 chr2L 3366648 3366656 8 132 18.5 0.0 9.2 0.8 140 chr2L 3366516 intron CG34394 - chr2L 3366586 intron CG34394 - chr2L 3366656 intron CG34394 - chr2L_8_3365001 chr2L_3365001 RAL-843 113 chr2L 3366524 3366551 chr2L 3366646 3366684 17 130 12.5 0.0 6.2 2.4 160 chr2L 3366524 intron CG34394 - chr2L 3366604 intron CG34394 - chr2L 3366684 intron CG34394 - chr2L_17_3365001 chr2L_3365001 RAL-843 114 chr2L 3386190 3386212 chr2L 3386348 3386370 9 156 17.5 4.0 10.8 0.8 180 chr2L 3386190 intergenic not near genes chr2L 3386280 intergenic not near genes chr2L 3386370 intergenic CR45301 - chr2L_9_3385001 chr2L_3385001 RAL-843 115 chr2L 3386215 3386270 chr2L 3386346 3386392 35 147 7.0 4.0 5.5 5.4 177 chr2L 3386215 intergenic not near genes chr2L 3386304 intergenic not near genes chr2L 3386392 intergenic CR45301 - chr2L_35_3385001 chr2L_3385001 RAL-843 116 chr2L 3388558 3388616 chr2L 3388849 3388906 pogo 13 291 6.0 3.0 4.5 2.4 348 chr2L 3388558 intergenic CG42460 - chr2L 3388732 intergenic CG42460 - chr2L 3388906 intergenic CG42460 -,CR44791 + chr2L_13_3385001 chr2L_3385001 RAL-843 117 chr2L 3389733 3389805 chr2L 3389898 3389967 23 165 6.0 10.5 8.2 2.5 234 chr2L 3389733 5` UTR CR44791 + chr2L 3389850 intergenic CR44791 + chr2L 3389967 intergenic CR44791 + chr2L_23_3385001 chr2L_3385001 RAL-843 118 chr2L 3393747 3393813 chr2L 3393871 3393933 20 118 6.0 12.5 9.2 2.0 186 chr2L 3393747 intergenic not near genes chr2L 3393840 intergenic not near genes chr2L 3393933 intergenic not near genes chr2L_20_3390001 chr2L_3390001 RAL-843 119 chr2L 3438518 3438548 chr2L 3438650 3438680 6 132 14.0 8.5 11.2 0.5 162 chr2L 3438518 intergenic not near genes chr2L 3438599 intergenic not near genes chr2L 3438680 intergenic not near genes chr2L_6_3435001 chr2L_3435001 RAL-843 120 chr2L 3438555 3438573 chr2L 3438649 3438705 7 125 8.5 7.5 8.0 0.8 150 chr2L 3438555 intergenic not near genes chr2L 3438630 intergenic not near genes chr2L 3438705 intergenic not near genes chr2L_7_3435001 chr2L_3435001 RAL-843 121 chr2L 3444070 3444102 chr2L 3444199 3444231 17 126 15.0 22.0 18.5 0.9 161 chr2L 3444070 intergenic not near genes chr2L 3444150 intergenic not near genes chr2L 3444231 intergenic not near genes chr2L_17_3440001 chr2L_3440001 RAL-843 122 chr2L 3508299 3508375 chr2L 3508427 3508503 16 128 1.5 9.0 5.2 2.6 204 chr2L 3508299 intergenic tim -,CR45299 + chr2L 3508401 intergenic CR45299 +,tim - chr2L 3508503 intergenic CR45299 +,tim - chr2L_16_3505001 chr2L_3505001 RAL-843 123 chr2L 3522982 3523053 chr2L 3523145 3523216 32 158 11.0 6.5 8.8 3.3 234 chr2L 3522982 exon Sr-CIV - chr2L 3523099 intron Sr-CIV - chr2L 3523216 exon Sr-CIV - chr2L_32_3520001 chr2L_3520001 RAL-843 124 chr2L 3627856 3627909 chr2L 3627994 3628047 32 138 2.0 11.5 6.8 4.1 191 chr2L 3627856 intron for - chr2L 3627952 intron for - chr2L 3628047 intron for - chr2L_32_3625001 chr2L_3625001 RAL-843 125 chr2L 3632244 3632258 chr2L 3632362 3632385 8 125 0.0 0.5 0.2 6.7 141 chr2L 3632244 intron for - chr2L 3632314 intron for - chr2L 3632385 intron for - chr2L_8_3630001 chr2L_3630001 RAL-843 126 chr2L 3632261 3632268 chr2L 3632360 3632395 5 117 0.0 0.5 0.2 4.2 134 chr2L 3632261 intron for - chr2L 3632328 intron for - chr2L 3632395 intron for - chr2L_5_3630001 chr2L_3630001 RAL-843 127 chr2L 3649752 3649806 chr2L 3654988 3655058 copia 18 5249 5.0 8.0 6.5 2.4 5306 chr2L 3649752 intron for - chr2L 3652405 intron for - chr2L 3655058 intron for - chr2L_18_3650001 chr2L_3650001 RAL-843 128 chr2L 3688281 3688316 chr2L 3688414 3688449 13 132 7.0 0.0 3.5 2.9 168 chr2L 3688281 intron CG34340 + chr2L 3688365 intron CG34340 + chr2L 3688449 intron CG34340 + chr2L_13_3685001 chr2L_3685001 RAL-843 129 chr2L 3818983 3819027 chr2L 3819115 3819159 15 132 14.0 0.0 7.0 1.9 176 chr2L 3818983 intergenic CR44077 + chr2L 3819071 intergenic not near genes chr2L 3819159 intergenic not near genes chr2L_15_3815001 chr2L_3815001 RAL-843 130 chr2L 3820612 3820684 chr2L 3820989 3821061 23 373 8.5 8.0 8.2 2.5 449 chr2L 3820612 intergenic not near genes chr2L 3820836 intergenic not near genes chr2L 3821061 intergenic not near genes chr2L_23_3820001 chr2L_3820001 RAL-843 131 chr2L 3831787 3831862 chr2L 3831918 3831993 23 131 6.5 5.5 6.0 3.3 206 chr2L 3831787 intergenic not near genes chr2L 3831890 intergenic not near genes chr2L 3831993 intergenic not near genes chr2L_23_3830001 chr2L_3830001 RAL-843 132 chr2L 3862379 3862523 chr2L 3862513 3862633 13 139 0.0 0.0 0.0 13.0 254 chr2L 3862379 intergenic CR44078 -,CG3964 + chr2L 3862506 intergenic CG3964 +,CR44078 - chr2L 3862633 intergenic CG3964 + chr2L_13_3860001 chr2L_3860001 RAL-843 133 chr2L 3891592 3891881 chr2L 3891717 3892016 17 133 13.5 14.0 13.8 1.1 424 chr2L 3891592 intron capu - chr2L 3891804 intron capu - chr2L 3892016 intron capu - chr2L_17_3890001 chr2L_3890001 RAL-843 134 chr2L 3891884 3891915 chr2L 3892019 3892050 11 134 7.5 7.5 7.5 1.3 166 chr2L 3891884 intron capu - chr2L 3891967 intron capu - chr2L 3892050 intron capu - chr2L_11_3890001 chr2L_3890001 RAL-843 135 chr2L 3898804 3898814 chr2L 3898938 3898948 4 134 7.0 9.5 8.2 0.4 144 chr2L 3898804 intron capu - chr2L 3898876 intron capu - chr2L 3898948 intron capu - chr2L_4_3895001 chr2L_3895001 RAL-843 136 chr2L 3905992 3906062 chr2L 3906188 3906258 21 192 10.5 7.5 9.0 2.1 266 chr2L 3905992 intron fred - chr2L 3906125 intron fred - chr2L 3906258 intron fred - chr2L_21_3905001 chr2L_3905001 RAL-843 137 chr2L 4027657 4027672 chr2L 4027783 4027798 5 122 3.5 7.5 5.5 0.8 141 chr2L 4027657 intergenic not near genes chr2L 4027728 intergenic not near genes chr2L 4027798 intergenic not near genes chr2L_5_4025001 chr2L_4025001 RAL-843 138 chr2L 4037751 4037809 chr2L 4037888 4037946 24 137 5.0 4.0 4.5 4.4 195 chr2L 4037751 intron ed + chr2L 4037848 intron ed + chr2L 4037946 intron ed + chr2L_24_4035001 chr2L_4035001 RAL-843 139 chr2L 4038940 4039011 chr2L 4039071 4039137 6 120 7.0 0.5 3.8 1.2 197 chr2L 4038940 intron ed + chr2L 4039038 intron ed + chr2L 4039137 intron ed + chr2L_6_4035001 chr2L_4035001 RAL-843 140 chr2L 4062948 4063005 chr2L 4063103 4063153 10 151 11.0 9.0 10.0 0.9 205 chr2L 4062948 intron ed + chr2L 4063050 intron ed + chr2L 4063153 intron ed + chr2L_10_4060001 chr2L_4060001 RAL-843 141 chr2L 4066012 4066026 chr2L 4068887 4068901 Juan 5 2875 17.0 8.5 12.8 0.4 2889 chr2L 4066012 intron ed + chr2L 4067456 intron ed + chr2L 4068901 intron ed + chr2L_5_4065001 chr2L_4065001 RAL-843 142 chr2L 4066036 4066053 chr2L 4068879 4068928 Juan 10 2864 11.0 7.5 9.2 1.0 2892 chr2L 4066036 intron ed + chr2L 4067482 intron ed + chr2L 4068928 intron ed + chr2L_10_4065001 chr2L_4065001 RAL-843 143 chr2L 4116359 4116423 chr2L 4116484 4116560 10 134 9.0 7.0 8.0 1.1 201 chr2L 4116359 intergenic not near genes chr2L 4116460 intergenic not near genes chr2L 4116560 intergenic not near genes chr2L_10_4115001 chr2L_4115001 RAL-843 144 chr2L 4159364 4159426 chr2L 4159614 4159676 21 250 7.0 4.5 5.8 3.1 312 chr2L 4159364 intergenic not near genes chr2L 4159520 intergenic not near genes chr2L 4159676 intergenic not near genes chr2L_21_4155001 chr2L_4155001 RAL-843 145 chr2L 4160478 4160520 chr2L 4160914 4160981 13 457 6.0 5.0 5.5 2.0 503 chr2L 4160478 intergenic not near genes chr2L 4160730 intergenic not near genes chr2L 4160981 intergenic not near genes chr2L_13_4160001 chr2L_4160001 RAL-843 146 chr2L 4166332 4166408 chr2L 4166465 4166535 31 133 7.5 12.5 10.0 2.8 203 chr2L 4166332 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166535 intergenic Or24a - chr2L_31_4165001 chr2L_4165001 RAL-843 147 chr2L 4179393 4179460 chr2L 4179568 4179624 17 173 0.0 5.0 2.5 4.9 231 chr2L 4179393 intergenic not near genes chr2L 4179508 intergenic not near genes chr2L 4179624 intergenic not near genes chr2L_17_4175001 chr2L_4175001 RAL-843 148 chr2L 4180078 4180118 chr2L 4180204 4180244 11 126 9.0 9.5 9.2 1.1 166 chr2L 4180078 intergenic not near genes chr2L 4180161 intergenic not near genes chr2L 4180244 intergenic not near genes chr2L_11_4180001 chr2L_4180001 RAL-843 149 chr2L 4184441 4184507 chr2L 4184813 4184879 21 372 4.0 7.0 5.5 3.2 438 chr2L 4184441 intergenic not near genes chr2L 4184660 intergenic not near genes chr2L 4184879 intergenic not near genes chr2L_21_4180001 chr2L_4180001 RAL-843 150 chr2L 4195082 4195113 chr2L 4195218 4195249 21 136 7.0 14.0 10.5 1.8 167 chr2L 4195082 exon CG3714 - chr2L 4195166 intron CG3714 - chr2L 4195249 intron CG3714 - chr2L_21_4195001 chr2L_4195001 RAL-843 151 chr2L 4211802 4211810 chr2L 4211944 4211949 6 142 8.5 11.0 9.8 0.6 147 chr2L 4211802 intron ft - chr2L 4211876 intron ft - chr2L 4211949 intron ft - chr2L_6_4210001 chr2L_4210001 RAL-843 152 chr2L 4317880 4317902 chr2L 4317973 4317990 13 119 13.5 15.5 14.5 0.8 110 chr2L 4317880 intron tutl + chr2L 4317935 intron tutl + chr2L 4317990 intron tutl + chr2L_13_4315001 chr2L_4315001 RAL-843 153 chr2L 4351422 4351501 chr2L 4351548 4351627 32 124 9.5 9.0 9.2 3.1 205 chr2L 4351422 5` UTR CR44700 + chr2L 4351524 intergenic CR44700 + chr2L 4351627 intergenic CR44700 + chr2L_32_4350001 chr2L_4350001 RAL-843 154 chr2L 4356613 4356644 chr2L 4356959 4356990 18 346 5.5 7.0 6.2 2.5 377 chr2L 4356613 intergenic not near genes chr2L 4356802 intergenic not near genes chr2L 4356990 intergenic not near genes chr2L_18_4355001 chr2L_4355001 RAL-843 155 chr2L 4356647 4356682 chr2L 4356953 4357018 11 339 5.0 6.5 5.8 1.6 371 chr2L 4356647 intergenic not near genes chr2L 4356832 intergenic not near genes chr2L 4357018 intergenic not near genes chr2L_11_4355001 chr2L_4355001 RAL-843 156 chr2L 4369502 4369564 chr2L 4370131 4370199 28 633 7.5 5.5 6.5 3.7 697 chr2L 4369502 intron Traf4 + chr2L 4369850 intron Traf4 + chr2L 4370199 intron Traf4 + chr2L_28_4365001 chr2L_4365001 RAL-843 157 chr2L 4601661 4601728 chr2L 4609152 4609219 mdg1 25 7490 10.5 11.0 10.8 2.1 7558 chr2L 4601661 intron dp - chr2L 4605440 intron dp - chr2L 4609219 intron dp - chr2L_25_4605001 chr2L_4605001 RAL-843 158 chr2L 4656501 4656509 chr2L 4656629 4656637 4 128 14.0 0.0 7.0 0.5 136 chr2L 4656501 intergenic not near genes chr2L 4656569 intergenic not near genes chr2L 4656637 intergenic not near genes chr2L_4_4655001 chr2L_4655001 RAL-843 159 chr2L 4656518 4656570 chr2L 4656627 4656696 15 124 3.5 0.0 1.8 5.4 178 chr2L 4656518 intergenic not near genes chr2L 4656607 intergenic not near genes chr2L 4656696 intergenic not near genes chr2L_15_4655001 chr2L_4655001 RAL-843 160 chr2L 4658879 4658881 chr2L 5425606 5425615 4 766732 35.5 7.0 21.2 0.2 766736 chr2L 4658879 intergenic not near genes chr2L 5042247 intron CG31650 - chr2L 5425615 intergenic not near genes chr2L_4_5040001 chr2L_5040001 RAL-843 161 chr2L 4661433 4661508 chr2L 4661564 4661624 20 124 11.0 6.0 8.5 2.1 191 chr2L 4661433 intergenic not near genes chr2L 4661528 intergenic not near genes chr2L 4661624 intergenic not near genes chr2L_20_4660001 chr2L_4660001 RAL-843 162 chr2L 4661797 4661850 chr2L 4669427 4669480 opus 8 7628 9.0 15.5 12.2 0.6 7683 chr2L 4661797 intergenic not near genes chr2L 4665638 intergenic not near genes chr2L 4669480 intergenic not near genes chr2L_8_4665001 chr2L_4665001 RAL-843 163 chr2L 4781082 4781159 chr2L 4781242 4781298 14 146 6.5 0.5 3.5 3.1 216 chr2L 4781082 intron CG15630 - chr2L 4781190 intron CG15630 - chr2L 4781298 intron CG15630 - chr2L_14_4780001 chr2L_4780001 RAL-843 164 chr2L 4819442 4819512 chr2L 4819615 4819680 23 171 3.0 7.5 5.2 3.7 238 chr2L 4819442 intergenic not near genes chr2L 4819561 intergenic not near genes chr2L 4819680 intergenic not near genes chr2L_23_4815001 chr2L_4815001 RAL-843 165 chr2L 4858419 4858424 chr2L 4858552 4858557 4 133 20.5 5.5 13.0 0.3 138 chr2L 4858419 intron pog + chr2L 4858488 intron pog + chr2L 4858557 intron pog + chr2L_4_4855001 chr2L_4855001 RAL-843 166 chr2L 4892887 4892893 chr2L 4893020 4893026 5 133 3.0 6.5 4.8 0.9 139 chr2L 4892887 intron CG3036 + chr2L 4892956 intron CG3036 + chr2L 4893026 intron CG3036 + chr2L_5_4890001 chr2L_4890001 RAL-843 167 chr2L 4918131 4918188 chr2L 4923254 4923311 jockey 29 5123 8.0 12.0 10.0 2.6 5180 chr2L 4918131 intron hoe1 - chr2L 4920721 intron hoe1 - chr2L 4923311 intron hoe1 - chr2L_29_4920001 chr2L_4920001 RAL-843 168 chr2L 4925653 4925690 chr2L 4925782 4925814 15 128 10.0 14.5 12.2 1.1 161 chr2L 4925653 intron hoe1 - chr2L 4925734 intron hoe1 - chr2L 4925814 intron hoe1 - chr2L_15_4925001 chr2L_4925001 RAL-843 169 chr2L 4953468 4953483 chr2L 4953759 4953774 pogo 8 290 18.0 5.5 11.8 0.6 306 chr2L 4953468 intergenic Jon25Bii - chr2L 4953621 intergenic Jon25Bii - chr2L 4953774 intergenic not near genes chr2L_8_4950001 chr2L_4950001 RAL-843 170 chr2L 4953485 4953501 chr2L 4953754 4953792 pogo 5 286 13.5 5.5 9.5 0.5 307 chr2L 4953485 intergenic Jon25Bii - chr2L 4953638 intergenic not near genes chr2L 4953792 intergenic Jon25Bi - chr2L_5_4950001 chr2L_4950001 RAL-843 171 chr2L 4997907 4997918 chr2L 4998046 4998046 4 136 23.0 12.5 17.8 0.2 139 chr2L 4997907 intron Rtnl1 - chr2L 4997976 intron Rtnl1 - chr2L 4998046 intron Rtnl1 - chr2L_4_4995001 chr2L_4995001 RAL-843 172 chr2L 4997919 4997940 chr2L 4998041 4998079 11 127 17.5 11.0 14.2 0.7 160 chr2L 4997919 intron Rtnl1 - chr2L 4997999 intron Rtnl1 - chr2L 4998079 intron Rtnl1 - chr2L_11_4995001 chr2L_4995001 RAL-843 173 chr2L 4997942 4997982 chr2L 4998040 4998121 22 134 8.0 10.5 9.2 2.2 179 chr2L 4997942 intron Rtnl1 - chr2L 4998032 intron Rtnl1 - chr2L 4998121 intron Rtnl1 - chr2L_22_4995001 chr2L_4995001 RAL-843 174 chr2L 5010865 5010879 chr2L 5010992 5011006 9 127 5.5 16.5 11.0 0.8 141 chr2L 5010865 intergenic CG31917 -,Tfb5 -,CG3887 + chr2L 5010936 5` UTR CG3887 + chr2L 5011006 5` UTR CG3887 + chr2L_9_5010001 chr2L_5010001 RAL-843 175 chr2L 5025085 5025164 chr2L 5025211 5025290 23 125 5.0 3.5 4.2 4.4 205 chr2L 5025085 intron vkg - chr2L 5025188 intron vkg - chr2L 5025290 intron vkg - chr2L_23_5025001 chr2L_5025001 RAL-843 176 chr2L 5117247 5117325 chr2L 5117379 5117457 40 132 7.5 7.5 7.5 4.7 210 chr2L 5117247 intron Msp300 + chr2L 5117352 intron Msp300 + chr2L 5117457 intron Msp300 + chr2L_40_5115001 chr2L_5115001 RAL-843 177 chr2L 5200537 5200601 chr2L 5215735 5215814 26 15213 65.5 64.5 65.0 0.4 15277 chr2L 5200537 exon Msp300 + chr2L 5208176 exon Cyp28d2 + chr2L 5215814 exon CG14034 - chr2L_26_5205001 chr2L_5205001 RAL-843 178 chr2L 5240930 5240937 chr2L 5241058 5241065 5 128 0.0 5.0 2.5 1.4 135 chr2L 5240930 intron tkv - chr2L 5240998 intron tkv - chr2L 5241065 intron tkv - chr2L_5_5240001 chr2L_5240001 RAL-843 179 chr2L 5263680 5263741 chr2L 5263812 5263873 23 132 6.0 14.5 10.2 2.1 193 chr2L 5263680 intron tkv - chr2L 5263776 intron tkv - chr2L 5263873 intron tkv - chr2L_23_5260001 chr2L_5260001 RAL-843 180 chr2L 5342741 5342793 chr2L 5345171 5345223 Doc 20 2430 0.5 10.5 5.5 3.1 2482 chr2L 5342741 intergenic not near genes chr2L 5343982 intergenic not near genes chr2L 5345223 intergenic not near genes chr2L_20_5340001 chr2L_5340001 RAL-843 181 chr2L 5459915 5459926 chr2L 5460047 5460058 8 132 7.0 11.5 9.2 0.8 143 chr2L 5459915 intergenic not near genes chr2L 5459986 intergenic not near genes chr2L 5460058 intergenic not near genes chr2L_8_5455001 chr2L_5455001 RAL-843 182 chr2L 5492491 5492536 chr2L 5492637 5492707 14 152 0.0 8.0 4.0 2.8 216 chr2L 5492491 intergenic not near genes chr2L 5492599 intergenic not near genes chr2L 5492707 intergenic not near genes chr2L_14_5490001 chr2L_5490001 RAL-843 183 chr2L 5582278 5582342 chr2L 5582418 5582482 29 139 6.0 5.5 5.8 4.3 204 chr2L 5582278 intergenic not near genes chr2L 5582380 intergenic not near genes chr2L 5582482 intergenic not near genes chr2L_29_5580001 chr2L_5580001 RAL-843 184 chr2L 5594285 5594352 chr2L 5594422 5594447 30 140 8.5 5.5 7.0 3.8 162 chr2L 5594285 intergenic not near genes chr2L 5594366 intergenic not near genes chr2L 5594447 intergenic not near genes chr2L_30_5590001 chr2L_5590001 RAL-843 185 chr2L 5628151 5628219 chr2L 5628285 5628353 16 134 0.0 7.5 3.8 3.3 202 chr2L 5628151 intron CG31646 - chr2L 5628252 intron CG31646 - chr2L 5628353 intron CG31646 - chr2L_16_5625001 chr2L_5625001 RAL-843 186 chr2L 5639264 5639296 chr2L 5639384 5639389 19 123 10.5 6.5 8.5 2.0 125 chr2L 5639264 intron CG31646 - chr2L 5639326 intron CG31646 - chr2L 5639389 intron CG31646 - chr2L_19_5635001 chr2L_5635001 RAL-843 187 chr2L 5646645 5646657 chr2L 5646775 5646787 5 130 18.5 17.0 17.8 0.3 142 chr2L 5646645 intron CG31646 - chr2L 5646716 intron CG31646 - chr2L 5646787 intron CG31646 - chr2L_5_5645001 chr2L_5645001 RAL-843 188 chr2L 5646658 5646674 chr2L 5646773 5646778 10 125 14.5 17.0 15.8 0.6 120 chr2L 5646658 intron CG31646 - chr2L 5646718 intron CG31646 - chr2L 5646778 intron CG31646 - chr2L_10_5645001 chr2L_5645001 RAL-843 189 chr2L 5651360 5651425 chr2L 5651534 5651599 31 174 4.5 5.5 5.0 5.2 239 chr2L 5651360 intron CG31646 - chr2L 5651480 intron CG31646 - chr2L 5651599 intron CG31646 - chr2L_31_5650001 chr2L_5650001 RAL-843 190 chr2L 5666277 5666296 chr2L 5666407 5666436 7 137 7.5 9.0 8.2 0.8 159 chr2L 5666277 intron Hsp60C + chr2L 5666356 intron Hsp60C + chr2L 5666436 intron Hsp60C + chr2L_7_5665001 chr2L_5665001 RAL-843 191 chr2L 5666298 5666320 chr2L 5666413 5666460 10 136 4.5 9.0 6.8 1.3 162 chr2L 5666298 intron Hsp60C + chr2L 5666379 intron Hsp60C + chr2L 5666460 intron Hsp60C + chr2L_10_5665001 chr2L_5665001 RAL-843 192 chr2L 5725175 5725234 chr2L 5725311 5725370 25 136 9.5 8.0 8.8 2.6 195 chr2L 5725175 5` UTR CG11030 + chr2L 5725272 intron CG11030 + chr2L 5725370 intron CG11030 + chr2L_25_5725001 chr2L_5725001 RAL-843 193 chr2L 5726167 5726243 chr2L 5726296 5726391 21 128 10.0 0.5 5.2 3.4 224 chr2L 5726167 intron CG11030 + chr2L 5726279 intron CG11030 + chr2L 5726391 intron CG11030 + chr2L_21_5725001 chr2L_5725001 RAL-843 194 chr2L 5762405 5762466 chr2L 5762540 5762601 25 135 7.0 13.0 10.0 2.3 196 chr2L 5762405 3` UTR CG11030 + chr2L 5762503 intergenic obst-E -,CG11030 + chr2L 5762601 3` UTR obst-E - chr2L_25_5760001 chr2L_5760001 RAL-843 195 chr2L 5796866 5796925 chr2L 5796992 5797052 15 127 10.0 10.5 10.2 1.3 186 chr2L 5796866 intron CG9171 - chr2L 5796959 intron CG9171 - chr2L 5797052 intron CG9171 - chr2L_15_5795001 chr2L_5795001 RAL-843 196 chr2L 5814645 5814710 chr2L 5814778 5814843 15 132 7.0 7.5 7.2 1.8 198 chr2L 5814645 intergenic not near genes chr2L 5814744 intergenic not near genes chr2L 5814843 intergenic not near genes chr2L_15_5810001 chr2L_5810001 RAL-843 197 chr2L 5816158 5816210 chr2L 5816262 5816311 24 121 7.0 10.0 8.5 2.5 153 chr2L 5816158 intergenic not near genes chr2L 5816234 intergenic not near genes chr2L 5816311 intergenic not near genes chr2L_24_5815001 chr2L_5815001 RAL-843 198 chr2L 5827670 5827733 chr2L 5836728 5836771 roo 29 9057 7.5 10.0 8.8 3.0 9101 chr2L 5827670 intron TrissinR + chr2L 5832220 intron TrissinR + chr2L 5836771 intron TrissinR + chr2L_29_5830001 chr2L_5830001 RAL-843 199 chr2L 5866342 5866396 chr2L 5866487 5866541 10 144 7.5 0.0 3.8 2.1 199 chr2L 5866342 intron rau - chr2L 5866442 intron rau - chr2L 5866541 intron rau - chr2L_10_5865001 chr2L_5865001 RAL-843 200 chr2L 5926217 5926454 chr2L 5926347 5926592 21 165 0.0 0.0 0.0 21.0 375 chr2L 5926217 intron dsf + chr2L 5926404 intron dsf + chr2L 5926592 intron dsf + chr2L_21_5925001 chr2L_5925001 RAL-843 201 chr2L 5940990 5941003 chr2L 5941150 5941163 7 160 14.0 26.0 20.0 0.3 173 chr2L 5940990 intergenic not near genes chr2L 5941076 intergenic not near genes chr2L 5941163 intergenic not near genes chr2L_7_5940001 chr2L_5940001 RAL-843 202 chr2L 5941977 5942053 chr2L 5942119 5942195 26 137 7.0 5.0 6.0 3.7 218 chr2L 5941977 intergenic CR45289 + chr2L 5942086 5` UTR CR45289 + chr2L 5942195 5` UTR CR45289 + chr2L_26_5940001 chr2L_5940001 RAL-843 203 chr2L 6070899 6070914 chr2L 6071038 6071053 8 138 0.0 22.5 11.2 0.7 154 chr2L 6070899 intergenic Kr-h2 +,CG9154 - chr2L 6070976 intergenic Kr-h2 +,CG9154 - chr2L 6071053 5` UTR Kr-h2 + chr2L_8_6070001 chr2L_6070001 RAL-843 204 chr2L 6070915 6070917 chr2L 6071034 6071056 4 131 0.0 22.0 11.0 0.3 141 chr2L 6070915 intergenic Kr-h2 +,CG9154 - chr2L 6070986 intergenic Kr-h2 +,CG9154 - chr2L 6071056 5` UTR Kr-h2 + chr2L_4_6070001 chr2L_6070001 RAL-843 205 chr2L 6117505 6117574 chr2L 6117652 6117721 11 144 6.5 7.5 7.0 1.4 216 chr2L 6117505 intron stai + chr2L 6117613 intron stai + chr2L 6117721 intron stai + chr2L_11_6115001 chr2L_6115001 RAL-843 206 chr2L 6154869 6154947 chr2L 6154997 6155073 24 124 6.0 9.0 7.5 2.8 204 chr2L 6154869 exon CG31639 - chr2L 6154971 5` UTR CG31639 - chr2L 6155073 5` UTR CG31639 - chr2L_24_6150001 chr2L_6150001 RAL-843 207 chr2L 6199956 6200032 chr2L 6200157 6200233 18 199 6.5 5.0 5.8 2.6 277 chr2L 6199956 intron CG34380 + chr2L 6200094 intron CG34380 + chr2L 6200233 intron CG34380 + chr2L_18_6200001 chr2L_6200001 RAL-843 208 chr2L 6268484 6268536 chr2L 6268620 6268666 5 135 24.0 27.0 25.5 0.2 182 chr2L 6268484 intron Ddr + chr2L 6268575 intron Ddr + chr2L 6268666 intron Ddr + chr2L_5_6265001 chr2L_6265001 RAL-843 209 chr2L 6279591 6279620 chr2L 6279720 6279749 13 129 24.5 13.5 19.0 0.7 158 chr2L 6279591 intron Ddr + chr2L 6279670 intron Ddr + chr2L 6279749 intron Ddr + chr2L_13_6275001 chr2L_6275001 RAL-843 210 chr2L 6283893 6283970 chr2L 6284053 6284132 31 160 8.5 0.5 4.5 5.6 239 chr2L 6283893 intron Ddr + chr2L 6284012 intron Ddr + chr2L 6284132 intron Ddr + chr2L_31_6280001 chr2L_6280001 RAL-843 211 chr2L 6316302 6316316 chr2L 6316440 6316454 4 138 0.0 12.5 6.2 0.6 152 chr2L 6316302 intron Ddr + chr2L 6316378 intron Ddr + chr2L 6316454 intron Ddr + chr2L_4_6315001 chr2L_6315001 RAL-843 212 chr2L 6318703 6318720 chr2L 6318907 6318916 8 203 15.5 15.0 15.2 0.5 213 chr2L 6318703 intron Ddr + chr2L 6318810 intron Ddr + chr2L 6318916 intron Ddr + chr2L_8_6315001 chr2L_6315001 RAL-843 213 chr2L 6318724 6318763 chr2L 6318903 6318967 24 201 5.0 14.0 9.5 2.3 243 chr2L 6318724 intron Ddr + chr2L 6318846 intron Ddr + chr2L 6318967 intron Ddr + chr2L_24_6315001 chr2L_6315001 RAL-843 214 chr2L 6349027 6349073 chr2L 6349155 6349201 13 128 7.5 9.0 8.2 1.4 174 chr2L 6349027 intergenic CG9498 - chr2L 6349114 intergenic CG9498 - chr2L 6349201 intergenic CG9498 - chr2L_13_6345001 chr2L_6345001 RAL-843 215 chr2L 6357762 6357830 chr2L 6357894 6357929 11 110 23.0 25.0 24.0 0.4 167 chr2L 6357762 exon CG9500 - chr2L 6357846 exon CG9500 - chr2L 6357929 exon CG9500 - chr2L_11_6355001 chr2L_6355001 RAL-843 216 chr2L 6363108 6363172 chr2L 6366080 6366144 Burdock 26 2969 8.0 13.5 10.8 2.2 3036 chr2L 6363108 intergenic not near genes chr2L 6364626 intergenic not near genes chr2L 6366144 intergenic not near genes chr2L_26_6360001 chr2L_6360001 RAL-843 217 chr2L 6390072 6390151 chr2L 6390205 6390281 7 130 7.0 0.0 3.5 1.6 209 chr2L 6390072 intron CG42368 - chr2L 6390176 intron CG42368 - chr2L 6390281 intron CG42368 - chr2L_7_6390001 chr2L_6390001 RAL-843 218 chr2L 6426814 6426882 chr2L 6445124 6445157 roo 40 18306 10.0 12.0 11.0 3.3 18343 chr2L 6426814 3` UTR CG9527 - chr2L 6435986 intron CG9527 - chr2L 6445157 exon CG9527 - chr2L_40_6435001 chr2L_6435001 RAL-843 219 chr2L 6448328 6448376 chr2L 6448469 6448512 6 137 5.0 3.5 4.2 1.2 184 chr2L 6448328 intergenic retm -,CG9527 - chr2L 6448420 intergenic retm -,CG9527 - chr2L 6448512 3` UTR retm - chr2L_6_6445001 chr2L_6445001 RAL-843 220 chr2L 6458538 6458592 chr2L 6458664 6458723 19 129 18.0 22.0 20.0 0.9 185 chr2L 6458538 exon frj + chr2L 6458630 3` UTR frj + chr2L 6458723 3` UTR frj + chr2L_19_6455001 chr2L_6455001 RAL-843 221 chr2L 6463513 6463574 chr2L 6463653 6463715 10 132 23.0 17.5 20.2 0.5 202 chr2L 6463513 exon CG16947 - chr2L 6463614 exon CG16947 - chr2L 6463715 exon CG16947 - chr2L_10_6460001 chr2L_6460001 RAL-843 222 chr2L 6500660 6500730 chr2L 6501416 6501486 11 755 7.5 26.0 16.8 0.6 826 chr2L 6500660 intron CG31637 + chr2L 6501073 intron CG31637 + chr2L 6501486 intron CG31637 + chr2L_11_6500001 chr2L_6500001 RAL-843 223 chr2L 6527206 6527240 chr2L 6527335 6527369 10 129 5.0 12.0 8.5 1.1 163 chr2L 6527206 intergenic CG31637 +,eya - chr2L 6527288 intergenic eya -,CG31637 + chr2L 6527369 intergenic eya -,CG31637 + chr2L_10_6525001 chr2L_6525001 RAL-843 224 chr2L 6537122 6537164 chr2L 6537250 6537292 9 128 22.0 19.0 20.5 0.4 170 chr2L 6537122 intron eya - chr2L 6537207 intron eya - chr2L 6537292 intron eya - chr2L_9_6535001 chr2L_6535001 RAL-843 225 chr2L 6544328 6544391 chr2L 6544470 6544533 26 140 5.5 5.5 5.5 4.0 205 chr2L 6544328 intron eya - chr2L 6544430 intron eya - chr2L 6544533 intron eya - chr2L_26_6540001 chr2L_6540001 RAL-843 226 chr2L 6564799 6564857 chr2L 6564941 6564998 17 142 13.0 6.0 9.5 1.6 199 chr2L 6564799 3` UTR CG13766 - chr2L 6564898 3` UTR CG13766 - chr2L 6564998 3` UTR CG13766 - chr2L_17_6560001 chr2L_6560001 RAL-843 227 chr2L 6590056 6590121 chr2L 6590174 6590209 7 116 20.0 16.0 18.0 0.4 153 chr2L 6590056 intron CG11319 - chr2L 6590132 intron CG11319 - chr2L 6590209 intron CG11319 - chr2L_7_6590001 chr2L_6590001 RAL-843 228 chr2L 6598075 6598143 chr2L 6599082 6599140 12 1005 13.0 16.0 14.5 0.8 1065 chr2L 6598075 intron CG11319 - chr2L 6598608 intron CG11319 - chr2L 6599140 intron CG11319 - chr2L_12_6595001 chr2L_6595001 RAL-843 229 chr2L 6626845 6626911 chr2L 6626980 6627039 29 134 10.0 11.5 10.8 2.5 194 chr2L 6626845 intron Oatp26F - chr2L 6626942 intron Oatp26F - chr2L 6627039 intron Oatp26F - chr2L_29_6625001 chr2L_6625001 RAL-843 230 chr2L 6640863 6640930 chr2L 6641008 6641075 25 142 9.5 5.5 7.5 2.9 212 chr2L 6640863 exon CG31635 - chr2L 6640969 intron CG31635 - chr2L 6641075 intron CG31635 - chr2L_25_6640001 chr2L_6640001 RAL-843 231 chr2L 6655481 6655547 chr2L 6655892 6655909 14 406 22.5 30.0 26.2 0.5 428 chr2L 6655481 exon CG31633 - chr2L 6655695 exon CG31633 - chr2L 6655909 exon CG31633 - chr2L_14_6655001 chr2L_6655001 RAL-843 232 chr2L 6740691 6740751 chr2L 6740828 6740858 5 131 12.0 24.0 18.0 0.3 167 chr2L 6740691 intergenic not near genes chr2L 6740774 intergenic not near genes chr2L 6740858 intergenic not near genes chr2L_5_6740001 chr2L_6740001 RAL-843 233 chr2L 6744518 6744578 chr2L 6744654 6744714 19 134 28.5 29.5 29.0 0.6 196 chr2L 6744518 intron CG11221 + chr2L 6744616 intron CG11221 + chr2L 6744714 intron,exon CG11221 +,CG31910 - chr2L_19_6740001 chr2L_6740001 RAL-843 234 chr2L 6771968 6772013 chr2L 6772077 6772148 8 125 18.0 19.5 18.8 0.4 180 chr2L 6771968 intron CG11321 - chr2L 6772058 intron CG11321 - chr2L 6772148 intron CG11321 - chr2L_8_6770001 chr2L_6770001 RAL-843 235 chr2L 6783365 6783416 chr2L 6783504 6783555 14 136 16.0 23.5 19.8 0.7 190 chr2L 6783365 intron nrv1 - chr2L 6783460 intron nrv1 - chr2L 6783555 intron nrv1 - chr2L_14_6780001 chr2L_6780001 RAL-843 236 chr2L 6783757 6783779 chr2L 6783883 6783905 10 126 19.5 22.0 20.8 0.5 148 chr2L 6783757 intron nrv1 - chr2L 6783831 intron nrv1 - chr2L 6783905 intron nrv1 - chr2L_10_6780001 chr2L_6780001 RAL-843 237 chr2L 6799492 6799561 chr2L 6799630 6799694 12 136 28.5 22.5 25.5 0.5 202 chr2L 6799492 5` UTR CR43610 + chr2L 6799593 5` UTR CR43610 + chr2L 6799694 intergenic CR43610 +,CG17376 - chr2L_12_6795001 chr2L_6795001 RAL-843 238 chr2L 6850334 6850408 chr2L 6850467 6850541 23 133 10.0 5.0 7.5 2.7 207 chr2L 6850334 intergenic not near genes chr2L 6850438 intergenic not near genes chr2L 6850541 intergenic not near genes chr2L_23_6850001 chr2L_6850001 RAL-843 239 chr2L 6867749 6867764 chr2L 6867889 6867904 5 140 25.5 25.5 25.5 0.2 155 chr2L 6867749 intron Nha1 - chr2L 6867826 intron Nha1 - chr2L 6867904 intron Nha1 - chr2L_5_6865001 chr2L_6865001 RAL-843 240 chr2L 6876750 6876804 chr2L 6882972 6883009 diver 15 6228 10.5 7.5 9.0 1.5 6259 chr2L 6876750 intron Nlg2 + chr2L 6879880 intron Nlg2 + chr2L 6883009 intron Nlg2 + chr2L_15_6875001 chr2L_6875001 RAL-843 241 chr2L 6887447 6887526 chr2L 6887647 6887728 13 200 19.5 18.5 19.0 0.7 281 chr2L 6887447 intron Nlg2 + chr2L 6887588 intron Nlg2 + chr2L 6887728 intron Nlg2 + chr2L_13_6885001 chr2L_6885001 RAL-843 242 chr2L 6888818 6888840 chr2L 6888953 6888975 7 135 7.5 9.0 8.2 0.8 157 chr2L 6888818 intron Nlg2 + chr2L 6888896 intron Nlg2 + chr2L 6888975 intron Nlg2 + chr2L_7_6885001 chr2L_6885001 RAL-843 243 chr2L 6891407 6891466 chr2L 6891555 6891614 20 147 21.0 21.5 21.2 0.9 207 chr2L 6891407 intron Nlg2 + chr2L 6891510 intron Nlg2 + chr2L 6891614 intron Nlg2 + chr2L_20_6890001 chr2L_6890001 RAL-843 244 chr2L 6968437 6968506 chr2L 6968649 6968718 18 212 21.0 22.5 21.8 0.8 281 chr2L 6968437 intergenic snRNP-U1-70K - chr2L 6968578 intergenic snRNP-U1-70K - chr2L 6968718 3` UTR snRNP-U1-70K - chr2L_18_6965001 chr2L_6965001 RAL-843 245 chr2L 6972217 6972260 chr2L 6972690 6972724 5 469 0.0 6.0 3.0 1.2 507 chr2L 6972217 intergenic snRNP-U1-70K - chr2L 6972470 intergenic uif - chr2L 6972724 intergenic uif - chr2L_5_6970001 chr2L_6970001 RAL-843 246 chr2L 7000355 7000396 chr2L 7000454 7000524 7 124 21.0 18.0 19.5 0.3 169 chr2L 7000355 intron uif - chr2L 7000440 intron uif - chr2L 7000524 intron uif - chr2L_7_7000001 chr2L_7000001 RAL-843 247 chr2L 7007361 7007423 chr2L 7007514 7007576 18 145 27.0 21.0 24.0 0.7 215 chr2L 7007361 intron uif - chr2L 7007468 intron uif - chr2L 7007576 intron uif - chr2L_18_7005001 chr2L_7005001 RAL-843 248 chr2L 7025887 7025902 chr2L 7026022 7026037 4 135 17.0 15.5 16.2 0.2 150 chr2L 7025887 intron CG31908 - chr2L 7025962 intron CG31908 - chr2L 7026037 intron CG31908 - chr2L_4_7025001 chr2L_7025001 RAL-843 249 chr2L 7039271 7039340 chr2L 7039433 7039502 24 161 18.0 7.0 12.5 1.8 231 chr2L 7039271 intron milt + chr2L 7039386 intron milt + chr2L 7039502 intron milt + chr2L_24_7035001 chr2L_7035001 RAL-843 250 chr2L 7078203 7078224 chr2L 7078331 7078346 6 127 25.0 21.0 23.0 0.2 143 chr2L 7078203 intron Pvf2 - chr2L 7078274 intron Pvf2 - chr2L 7078346 intron Pvf2 - chr2L_6_7075001 chr2L_7075001 RAL-843 251 chr2L 7078228 7078243 chr2L 7078313 7078314 7 112 19.5 19.5 19.5 0.3 86 chr2L 7078228 intron Pvf2 - chr2L 7078271 intron Pvf2 - chr2L 7078314 intron Pvf2 - chr2L_7_7075001 chr2L_7075001 RAL-843 252 chr2L 7111736 7111790 chr2L 7111861 7111925 5 133 4.5 4.5 4.5 0.9 189 chr2L 7111736 intron Pvf3 - chr2L 7111830 intron Pvf3 - chr2L 7111925 intron Pvf3 - chr2L_5_7110001 chr2L_7110001 RAL-843 253 chr2L 7118702 7118753 chr2L 7118931 7118982 12 229 9.0 23.5 16.2 0.7 280 chr2L 7118702 intron Pvf3 - chr2L 7118842 intron Pvf3 - chr2L 7118982 intron Pvf3 - chr2L_12_7115001 chr2L_7115001 RAL-843 254 chr2L 7125757 7125810 chr2L 7125923 7125976 8 166 13.0 18.0 15.5 0.5 219 chr2L 7125757 intron Pvf3 - chr2L 7125866 intron Pvf3 - chr2L 7125976 intron Pvf3 - chr2L_8_7125001 chr2L_7125001 RAL-843 255 chr2L 7126715 7126849 chr2L 7126846 7126978 21 130 6.5 8.5 7.5 2.5 263 chr2L 7126715 intron Pvf3 - chr2L 7126846 intron Pvf3 - chr2L 7126978 intron Pvf3 - chr2L_21_7125001 chr2L_7125001 RAL-843 256 chr2L 7151794 7151833 chr2L 7152139 7152178 10 344 11.0 24.0 17.5 0.5 384 chr2L 7151794 intron Pvf3 - chr2L 7151986 intron Pvf3 - chr2L 7152178 intron Pvf3 - chr2L_10_7150001 chr2L_7150001 RAL-843 257 chr2L 7244693 7244746 chr2L 7244868 7244921 8 175 29.0 21.0 25.0 0.3 228 chr2L 7244693 intron Ndae1 - chr2L 7244807 intron Ndae1 - chr2L 7244921 intron Ndae1 - chr2L_8_7240001 chr2L_7240001 RAL-843 258 chr2L 7254473 7254527 chr2L 7254612 7254650 9 134 13.0 7.0 10.0 0.8 177 chr2L 7254473 intergenic not near genes chr2L 7254562 intergenic not near genes chr2L 7254650 intergenic not near genes chr2L_9_7250001 chr2L_7250001 RAL-843 259 chr2L 7266505 7266514 chr2L 7267683 7267694 4 1182 34.5 40.0 37.2 0.1 1189 chr2L 7266505 intron Wnt4 - chr2L 7267100 intron Wnt4 - chr2L 7267694 intron Wnt4 - chr2L_4_7265001 chr2L_7265001 RAL-843 260 chr2L 7266516 7266551 chr2L 7267661 7267661 10 1166 39.5 37.0 38.2 0.3 1145 chr2L 7266516 intron Wnt4 - chr2L 7267088 intron Wnt4 - chr2L 7267661 intron Wnt4 - chr2L_10_7265001 chr2L_7265001 RAL-843 261 chr2L 7266315 7266378 chr2L 7267853 7267899 10 1536 45.5 43.0 44.2 0.2 1584 chr2L 7266315 intron Wnt4 - chr2L 7267107 intron Wnt4 - chr2L 7267899 intron Wnt4 - chr2L_10_7265001 chr2L_7265001 RAL-843 262 chr2L 7268409 7268466 chr2L 7268539 7268596 4 130 3.5 15.0 9.2 0.4 187 chr2L 7268409 intron Wnt4 - chr2L 7268502 intron Wnt4 - chr2L 7268596 intron Wnt4 - chr2L_4_7265001 chr2L_7265001 RAL-843 263 chr2L 7295980 7296018 chr2L 7296170 7296208 5 190 24.0 20.0 22.0 0.2 228 chr2L 7295980 intergenic not near genes chr2L 7296094 intergenic not near genes chr2L 7296208 intergenic not near genes chr2L_5_7295001 chr2L_7295001 RAL-843 264 chr2L 7301250 7301329 chr2L 7301383 7301462 19 132 21.0 20.0 20.5 0.9 212 chr2L 7301250 intergenic not near genes chr2L 7301356 intergenic not near genes chr2L 7301462 intergenic not near genes chr2L_19_7300001 chr2L_7300001 RAL-843 265 chr2L 7325871 7325938 chr2L 7326006 7326062 17 128 5.0 4.0 4.5 3.1 191 chr2L 7325871 intergenic not near genes chr2L 7325966 intergenic not near genes chr2L 7326062 intergenic not near genes chr2L_17_7325001 chr2L_7325001 RAL-843 266 chr2L 7331618 7331698 chr2L 7331755 7331836 21 136 23.5 24.5 24.0 0.8 218 chr2L 7331618 intergenic not near genes chr2L 7331727 intergenic not near genes chr2L 7331836 intergenic not near genes chr2L_21_7330001 chr2L_7330001 RAL-843 267 chr2L 7335160 7335231 chr2L 7335307 7335378 15 147 22.5 21.5 22.0 0.7 218 chr2L 7335160 intron Wnt6 + chr2L 7335269 intron Wnt6 + chr2L 7335378 intron Wnt6 + chr2L_15_7335001 chr2L_7335001 RAL-843 268 chr2L 7336852 7336913 chr2L 7336985 7337046 11 132 21.0 22.0 21.5 0.5 194 chr2L 7336852 intron Wnt6 + chr2L 7336949 intron Wnt6 + chr2L 7337046 intron Wnt6 + chr2L_11_7335001 chr2L_7335001 RAL-843 269 chr2L 7343282 7343357 chr2L 7350448 7350501 roo 13 7159 8.0 7.0 7.5 1.5 7219 chr2L 7343282 intron Wnt6 + chr2L 7346892 intron Wnt6 + chr2L 7350501 intron Wnt6 + chr2L_13_7345001 chr2L_7345001 RAL-843 270 chr2L 7356053 7356206 chr2L 7356187 7356335 14 132 7.0 5.5 6.2 1.9 282 chr2L 7356053 intergenic not near genes chr2L 7356194 intergenic not near genes chr2L 7356335 intergenic not near genes chr2L_14_7355001 chr2L_7355001 RAL-843 271 chr2L 7365475 7365491 chr2L 7365603 7365619 4 128 4.0 22.0 13.0 0.3 144 chr2L 7365475 intron Wnt10 + chr2L 7365547 intron Wnt10 + chr2L 7365619 intron Wnt10 + chr2L_4_7365001 chr2L_7365001 RAL-843 272 chr2L 7375789 7375824 chr2L 7375943 7375987 4 161 19.0 24.0 21.5 0.2 198 chr2L 7375789 exon Wnt10 + chr2L 7375888 intron Wnt10 + chr2L 7375987 intron Wnt10 + chr2L_4_7375001 chr2L_7375001 RAL-843 273 chr2L 7377854 7377900 chr2L 7377992 7378047 12 144 1.5 4.5 3.0 3.0 193 chr2L 7377854 5` UTR ninaC + chr2L 7377950 intron ninaC + chr2L 7378047 intron ninaC + chr2L_12_7375001 chr2L_7375001 RAL-843 274 chr2L 7436149 7436210 chr2L 7436293 7436344 19 143 20.5 15.0 17.8 1.0 195 chr2L 7436149 intergenic not near genes chr2L 7436246 intergenic not near genes chr2L 7436344 intergenic not near genes chr2L_19_7435001 chr2L_7435001 RAL-843 275 chr2L 7447749 7447811 chr2L 7447894 7447956 11 145 17.0 14.5 15.8 0.7 207 chr2L 7447749 5` UTR santa-maria - chr2L 7447852 5` UTR santa-maria - chr2L 7447956 5` UTR santa-maria - chr2L_11_7445001 chr2L_7445001 RAL-843 276 chr2L 7454661 7454679 chr2L 7454796 7454815 4 135 19.5 24.5 22.0 0.2 154 chr2L 7454661 intergenic Gr28b -,Gr28a - chr2L 7454738 intergenic Gr28b - chr2L 7454815 intergenic Gr28b - chr2L_4_7450001 chr2L_7450001 RAL-843 277 chr2L 5904538 5904540 chr2L 7466148 7466149 8 1561609 3.0 34.5 18.8 0.4 1561611 chr2L 5904538 intron CG9021 - chr2L 6685344 exon CG11327 - chr2L 7466149 intergenic CG6055 + chr2L_8_6685001 chr2L_6685001 RAL-843 278 chr2L 7486231 7486258 chr2L 7486358 7486385 13 127 2.5 14.0 8.2 1.4 154 chr2L 7486231 intron Ziz - chr2L 7486308 intron Ziz - chr2L 7486385 intron Ziz - chr2L_13_7485001 chr2L_7485001 RAL-843 279 chr2L 7489658 7489717 chr2L 7489797 7489856 17 139 26.0 29.5 27.8 0.6 198 chr2L 7489658 intron Ziz - chr2L 7489757 intron Ziz - chr2L 7489856 intron Ziz - chr2L_17_7485001 chr2L_7485001 RAL-843 280 chr2L 7493362 7493415 chr2L 7493503 7493551 8 138 0.0 6.5 3.2 1.9 189 chr2L 7493362 intron Ziz - chr2L 7493456 intron Ziz - chr2L 7493551 intron Ziz - chr2L_8_7490001 chr2L_7490001 RAL-843 281 chr2L 7510160 7510232 chr2L 7510349 7510420 13 186 23.5 28.5 26.0 0.5 260 chr2L 7510160 intron RapGAP1 - chr2L 7510290 intron RapGAP1 - chr2L 7510420 intron RapGAP1 - chr2L_13_7510001 chr2L_7510001 RAL-843 282 chr2L 7548062 7548102 chr2L 7550554 7550594 Burdock 8 2489 6.5 11.5 9.0 0.8 2532 chr2L 7548062 intron RapGAP1 - chr2L 7549328 intron RapGAP1 - chr2L 7550594 intron RapGAP1 - chr2L_8_7545001 chr2L_7545001 RAL-843 283 chr2L 7555191 7555234 chr2L 7555318 7555361 6 126 17.0 26.0 21.5 0.3 170 chr2L 7555191 intron RapGAP1 - chr2L 7555276 intron RapGAP1 - chr2L 7555361 intron RapGAP1 - chr2L_6_7555001 chr2L_7555001 RAL-843 284 chr2L 7567440 7567451 chr2L 7567567 7567578 4 127 24.5 26.5 25.5 0.2 138 chr2L 7567440 intron RapGAP1 - chr2L 7567509 intron RapGAP1 - chr2L 7567578 intron RapGAP1 - chr2L_4_7565001 chr2L_7565001 RAL-843 285 chr2L 7567461 7567508 chr2L 7567581 7567635 12 125 21.5 27.0 24.2 0.5 174 chr2L 7567461 intron RapGAP1 - chr2L 7567548 intron RapGAP1 - chr2L 7567635 intron RapGAP1 - chr2L_12_7565001 chr2L_7565001 RAL-843 286 chr2L 7579156 7579219 chr2L 7579397 7579460 BS 14 241 7.0 12.5 9.8 1.3 304 chr2L 7579156 intergenic RapGAP1 - chr2L 7579308 intergenic RapGAP1 - chr2L 7579460 intergenic RapGAP1 - chr2L_14_7575001 chr2L_7575001 RAL-843 287 chr2L 7579842 7579918 chr2L 7579974 7580050 17 132 23.5 25.0 24.2 0.7 208 chr2L 7579842 intergenic not near genes chr2L 7579946 intergenic not near genes chr2L 7580050 intergenic not near genes chr2L_17_7575001 chr2L_7575001 RAL-843 288 chr2L 7590587 7590648 chr2L 7590727 7590786 9 131 20.0 17.5 18.8 0.5 199 chr2L 7590587 intergenic not near genes chr2L 7590686 intergenic not near genes chr2L 7590786 intergenic not near genes chr2L_9_7590001 chr2L_7590001 RAL-843 289 chr2L 7629108 7629185 chr2L 7629245 7629322 26 135 21.0 27.0 24.0 1.0 214 chr2L 7629108 intergenic not near genes chr2L 7629215 intergenic not near genes chr2L 7629322 intergenic not near genes chr2L_26_7625001 chr2L_7625001 RAL-843 290 chr2L 7652999 7653056 chr2L 7653143 7653189 7 139 35.0 26.0 30.5 0.2 190 chr2L 7652999 intron Slob - chr2L 7653094 intron Slob - chr2L 7653189 intron Slob - chr2L_7_7650001 chr2L_7650001 RAL-843 291 chr2L 7655355 7655421 chr2L 7655495 7655561 16 137 25.0 18.5 21.8 0.7 206 chr2L 7655355 intron Slob - chr2L 7655458 intron Slob - chr2L 7655561 exon Slob - chr2L_16_7655001 chr2L_7655001 RAL-843 292 chr2L 7664011 7664062 chr2L 7664158 7664209 11 147 28.5 20.5 24.5 0.4 198 chr2L 7664011 intron Slob - chr2L 7664110 intron Slob - chr2L 7664209 intron Slob - chr2L_11_7660001 chr2L_7660001 RAL-843 293 chr2L 7668578 7668642 chr2L 7668731 7668795 18 149 57.0 46.0 51.5 0.3 217 chr2L 7668578 intron,intron Slob -,Myo28B1 + chr2L 7668686 intron,intron Slob -,Myo28B1 + chr2L 7668795 intron,intron Slob -,Myo28B1 + chr2L_18_7665001 chr2L_7665001 RAL-843 294 chr2L 7667082 7667149 chr2L 7670659 7670726 10 3577 43.5 40.0 41.8 0.2 3644 chr2L 7667082 intron,intron Slob -,Myo28B1 + chr2L 7668904 intron,intron Slob -,Myo28B1 + chr2L 7670726 intron,intron Slob -,Myo28B1 + chr2L_10_7665001 chr2L_7665001 RAL-843 295 chr2L 7766620 7766659 chr2L 7766711 7766785 12 122 6.0 6.0 6.0 1.7 165 chr2L 7766620 intergenic not near genes chr2L 7766702 intergenic not near genes chr2L 7766785 intergenic not near genes chr2L_12_7765001 chr2L_7765001 RAL-843 296 chr2L 7867525 7867555 chr2L 7867669 7867699 12 144 24.5 21.0 22.8 0.5 174 chr2L 7867525 intron Proc - chr2L 7867612 intron Proc - chr2L 7867699 intron Proc - chr2L_12_7865001 chr2L_7865001 RAL-843 297 chr2L 7887656 7887677 chr2L 7887788 7887809 9 132 3.5 13.5 8.5 0.9 153 chr2L 7887656 intergenic Spn28Da -,CG7102 - chr2L 7887732 3` UTR Spn28Da - chr2L 7887809 exon Spn28Da - chr2L_9_7885001 chr2L_7885001 RAL-843 298 chr2L 7941165 7941193 chr2L 7941278 7941311 7 118 15.0 14.0 14.5 0.5 146 chr2L 7941165 intron Snoo - chr2L 7941238 intron Snoo - chr2L 7941311 intron Snoo - chr2L_7_7940001 chr2L_7940001 RAL-843 299 chr2L 7958997 7959069 chr2L 7960458 7960532 pogo 19 1461 5.5 4.0 4.8 3.3 1535 chr2L 7958997 intron Snoo - chr2L 7959764 intron Snoo - chr2L 7960532 intron Snoo - chr2L_19_7955001 chr2L_7955001 RAL-843 300 chr2L 7965624 7965666 chr2L 7965878 7965920 roo 7 249 18.5 11.0 14.8 0.4 296 chr2L 7965624 intron Snoo - chr2L 7965772 intron Snoo - chr2L 7965920 intron Snoo - chr2L_7_7965001 chr2L_7965001 RAL-843 301 chr2L 7977040 7977111 chr2L 7984065 7984101 297 24 7021 6.5 7.0 6.8 3.1 7061 chr2L 7977040 intron Snoo - chr2L 7980570 intron Snoo - chr2L 7984101 intron,5` UTR Snoo -,CG7231 + chr2L_24_7980001 chr2L_7980001 RAL-843 302 chr2L 7986881 7986916 chr2L 7987017 7987053 9 137 2.5 7.5 5.0 1.5 172 chr2L 7986881 3` UTR pes - chr2L 7986967 3` UTR pes - chr2L 7987053 3` UTR pes - chr2L_9_7985001 chr2L_7985001 RAL-843 303 chr2L 8011944 8012022 chr2L 8012364 8012397 21 417 12.0 32.0 22.0 0.9 453 chr2L 8011944 intron Tg + chr2L 8012170 intron Tg + chr2L 8012397 intron Tg + chr2L_21_8010001 chr2L_8010001 RAL-843 304 chr2L 8013572 8013589 chr2L 8018826 8018837 copia 6 5253 16.0 0.5 8.2 0.7 5265 chr2L 8013572 intron Tg + chr2L 8016204 intron Tg + chr2L 8018837 intron Tg + chr2L_6_8015001 chr2L_8015001 RAL-843 305 chr2L 8013596 8013647 chr2L 8023581 8023632 copia 13 9985 8.0 5.5 6.8 1.7 10036 chr2L 8013596 intron Tg + chr2L 8018614 intron Tg + chr2L 8023632 intron Tg + chr2L_13_8015001 chr2L_8015001 RAL-843 306 chr2L 8018815 8018834 chr2L 8023649 8023668 Doc 8 4834 0.0 27.5 13.8 0.5 4853 chr2L 8018815 intron Tg + chr2L 8021242 intron Tg + chr2L 8023668 intron Tg + chr2L_8_8020001 chr2L_8020001 RAL-843 307 chr2L 8034557 8034594 chr2L 8034708 8034734 13 149 12.0 14.0 13.0 0.9 177 chr2L 8034557 intron,intron CG7367 -,Cka + chr2L 8034646 intron,intron CG7367 -,Cka + chr2L 8034734 intron,intron CG7367 -,Cka + chr2L_13_8030001 chr2L_8030001 RAL-843 308 chr2L 8044049 8044123 chr2L 8044178 8044252 17 128 16.5 22.0 19.2 0.8 203 chr2L 8044049 exon CG7466 + chr2L 8044150 intron CG7466 + chr2L 8044252 intron CG7466 + chr2L_17_8040001 chr2L_8040001 RAL-843 309 chr2L 8167111 8167121 chr2L 8167252 8167262 7 141 13.0 7.5 10.2 0.6 151 chr2L 8167111 intron Piezo + chr2L 8167186 intron Piezo + chr2L 8167262 intron Piezo + chr2L_7_8165001 chr2L_8165001 RAL-843 310 chr2L 8167126 8167172 chr2L 8167243 8167293 18 135 5.5 7.5 6.5 2.4 167 chr2L 8167126 intron Piezo + chr2L 8167210 intron Piezo + chr2L 8167293 intron Piezo + chr2L_18_8165001 chr2L_8165001 RAL-843 311 chr2L 8171274 8171301 chr2L 8171405 8171432 11 131 0.5 14.5 7.5 1.3 158 chr2L 8171274 intron Piezo + chr2L 8171353 intron Piezo + chr2L 8171432 intron Piezo + chr2L_11_8170001 chr2L_8170001 RAL-843 312 chr2L 8185442 8185488 chr2L 8185580 8185627 5 138 0.5 5.5 3.0 1.2 185 chr2L 8185442 intron Piezo + chr2L 8185534 intron Piezo + chr2L 8185627 intron Piezo + chr2L_5_8185001 chr2L_8185001 RAL-843 313 chr2L 8244682 8244748 chr2L 8244854 8244920 25 171 5.0 10.0 7.5 2.9 238 chr2L 8244682 intron CG8086 - chr2L 8244801 intron CG8086 - chr2L 8244920 intron CG8086 - chr2L_25_8240001 chr2L_8240001 RAL-843 314 chr2L 8268429 8268474 chr2L 8268562 8268607 15 133 5.5 0.0 2.8 3.9 178 chr2L 8268429 intron Btk29A - chr2L 8268518 intron Btk29A - chr2L 8268607 intron Btk29A - chr2L_15_8265001 chr2L_8265001 RAL-843 315 chr2L 8284975 8285020 chr2L 8285101 8285146 11 124 11.0 6.0 8.5 1.2 171 chr2L 8284975 intron Btk29A - chr2L 8285060 intron Btk29A - chr2L 8285146 intron Btk29A - chr2L_11_8285001 chr2L_8285001 RAL-843 316 chr2L 8286121 8286193 chr2L 8286248 8286300 28 124 12.0 13.5 12.8 2.0 179 chr2L 8286121 intron Btk29A - chr2L 8286210 intron Btk29A - chr2L 8286300 intron Btk29A - chr2L_28_8285001 chr2L_8285001 RAL-843 317 chr2L 8336894 8336967 chr2L 8337023 8337081 15 120 2.0 8.5 5.2 2.4 187 chr2L 8336894 intergenic not near genes chr2L 8336988 intergenic not near genes chr2L 8337081 intergenic not near genes chr2L_15_8335001 chr2L_8335001 RAL-843 318 chr2L 8452381 8452442 chr2L 8461598 8461663 roo 37 9220 12.0 8.5 10.2 3.3 9282 chr2L 8452381 intron fu12 - chr2L 8457022 intron fu12 - chr2L 8461663 intron fu12 - chr2L_37_8455001 chr2L_8455001 RAL-843 319 chr2L 8461796 8461873 chr2L 8461927 8462004 24 130 9.5 6.0 7.8 2.7 208 chr2L 8461796 intron fu12 - chr2L 8461900 intron fu12 - chr2L 8462004 intron fu12 - chr2L_24_8460001 chr2L_8460001 RAL-843 320 chr2L 8498159 8498235 chr2L 8498290 8498366 36 128 7.0 6.0 6.5 4.8 207 chr2L 8498159 intron Dh31 - chr2L 8498262 intron Dh31 - chr2L 8498366 intron Dh31 - chr2L_36_8495001 chr2L_8495001 RAL-843 321 chr2L 8503048 8503120 chr2L 8503313 8503350 21 261 5.5 9.5 7.5 2.5 302 chr2L 8503048 intron Dh31 - chr2L 8503199 intron Dh31 - chr2L 8503350 intron Dh31 - chr2L_21_8500001 chr2L_8500001 RAL-843 322 chr2L 8538124 8538192 chr2L 8538250 8538328 7 132 7.5 0.5 4.0 1.4 204 chr2L 8538124 intron CG17834 + chr2L 8538226 intron CG17834 + chr2L 8538328 intron CG17834 + chr2L_7_8535001 chr2L_8535001 RAL-843 323 chr2L 8612806 8612863 chr2L 8612933 8612990 32 127 9.5 8.0 8.8 3.3 184 chr2L 8612806 intron Sema-1a + chr2L 8612898 intron Sema-1a + chr2L 8612990 intron Sema-1a + chr2L_32_8610001 chr2L_8610001 RAL-843 324 chr2L 8614203 8614233 chr2L 8614331 8614361 13 126 15.0 10.0 12.5 1.0 158 chr2L 8614203 intron Sema-1a + chr2L 8614282 intron Sema-1a + chr2L 8614361 intron Sema-1a + chr2L_13_8610001 chr2L_8610001 RAL-843 325 chr2L 8614234 8614271 chr2L 8614327 8614399 17 123 8.5 9.5 9.0 1.7 165 chr2L 8614234 intron Sema-1a + chr2L 8614316 intron Sema-1a + chr2L 8614399 intron Sema-1a + chr2L_17_8610001 chr2L_8610001 RAL-843 326 chr2L 8628956 8628963 chr2L 8629090 8629097 6 134 21.0 9.5 15.2 0.4 141 chr2L 8628956 intron Sema-1a + chr2L 8629026 intron Sema-1a + chr2L 8629097 intron Sema-1a + chr2L_6_8625001 chr2L_8625001 RAL-843 327 chr2L 8628965 8629027 chr2L 8629083 8629161 21 125 9.5 8.5 9.0 2.1 196 chr2L 8628965 intron Sema-1a + chr2L 8629063 intron Sema-1a + chr2L 8629161 intron Sema-1a + chr2L_21_8625001 chr2L_8625001 RAL-843 328 chr2L 8680081 8680090 chr2L 8680217 8680226 4 136 0.0 8.0 4.0 0.8 145 chr2L 8680081 intergenic CG9287 - chr2L 8680154 intergenic CG9287 - chr2L 8680226 intergenic CG9287 - chr2L_4_8680001 chr2L_8680001 RAL-843 329 chr2L 8719156 8719232 chr2L 8719282 8719358 30 124 8.5 8.5 8.5 3.2 202 chr2L 8719156 intron raw - chr2L 8719257 intron raw - chr2L 8719358 intron raw - chr2L_30_8715001 chr2L_8715001 RAL-843 330 chr2L 8723072 8723137 chr2L 8731498 8731564 Tirant 35 8425 10.5 10.5 10.5 3.0 8492 chr2L 8723072 intron raw - chr2L 8727318 intron raw - chr2L 8731564 intron raw - chr2L_35_8725001 chr2L_8725001 RAL-843 331 chr2L 8759942 8759980 chr2L 8760133 8760188 7 196 10.0 0.0 5.0 1.2 246 chr2L 8759942 intergenic not near genes chr2L 8760065 intergenic not near genes chr2L 8760188 intergenic not near genes chr2L_7_8760001 chr2L_8760001 RAL-843 332 chr2L 8794968 8795023 chr2L 8795096 8795162 26 136 10.0 7.5 8.8 2.7 194 chr2L 8794968 intergenic not near genes chr2L 8795065 intergenic not near genes chr2L 8795162 intergenic not near genes chr2L_26_8795001 chr2L_8795001 RAL-843 333 chr2L 8813832 8813852 chr2L 8813943 8813979 16 119 9.0 14.0 11.5 1.3 147 chr2L 8813832 intergenic not near genes chr2L 8813906 intergenic not near genes chr2L 8813979 intergenic not near genes chr2L_16_8810001 chr2L_8810001 RAL-843 334 chr2L 8815856 8815895 chr2L 8815996 8816035 14 139 8.0 5.0 6.5 1.9 179 chr2L 8815856 intergenic not near genes chr2L 8815946 intergenic not near genes chr2L 8816035 intergenic not near genes chr2L_14_8815001 chr2L_8815001 RAL-843 335 chr2L 8820888 8820950 chr2L 8821017 8821080 16 129 5.0 9.0 7.0 2.0 192 chr2L 8820888 intergenic not near genes chr2L 8820984 intergenic not near genes chr2L 8821080 intergenic not near genes chr2L_16_8820001 chr2L_8820001 RAL-843 336 chr2L 8902412 8902474 chr2L 8902606 8902670 19 196 11.5 11.5 11.5 1.5 258 chr2L 8902412 intron CG34398 + chr2L 8902541 intron CG34398 + chr2L 8902670 intron CG34398 + chr2L_19_8900001 chr2L_8900001 RAL-843 337 chr2L 8910681 8910749 chr2L 8910817 8910890 24 136 9.0 5.0 7.0 3.0 209 chr2L 8910681 intron CG34398 + chr2L 8910786 intron CG34398 + chr2L 8910890 intron CG34398 + chr2L_24_8910001 chr2L_8910001 RAL-843 338 chr2L 8956174 8956243 chr2L 8956301 8956375 23 129 5.5 1.0 3.2 5.5 201 chr2L 8956174 intron CG31886 - chr2L 8956274 intron CG31886 - chr2L 8956375 intron CG31886 - chr2L_23_8955001 chr2L_8955001 RAL-843 339 chr2L 8976206 8976239 chr2L 8976348 8976381 5 142 0.0 5.5 2.8 1.3 175 chr2L 8976206 intergenic not near genes chr2L 8976294 intergenic not near genes chr2L 8976381 intergenic not near genes chr2L_5_8975001 chr2L_8975001 RAL-843 340 chr2L 9000235 9000308 chr2L 9007795 9007868 roo 30 7560 7.5 10.5 9.0 3.0 7633 chr2L 9000235 intergenic Try29F + chr2L 9004052 intergenic not near genes chr2L 9007868 intergenic not near genes chr2L_30_9000001 chr2L_9000001 RAL-843 341 chr2L 9035113 9035170 chr2L 9035241 9035303 17 132 9.0 0.0 4.5 3.1 190 chr2L 9035113 intergenic not near genes chr2L 9035208 intergenic not near genes chr2L 9035303 intergenic not near genes chr2L_17_9035001 chr2L_9035001 RAL-843 342 chr2L 9068130 9068209 chr2L 9068257 9068314 15 124 4.5 4.0 4.2 2.9 184 chr2L 9068130 intron CG31708 - chr2L 9068222 intron CG31708 - chr2L 9068314 intron CG31708 - chr2L_15_9065001 chr2L_9065001 RAL-843 343 chr2L 9084336 9084340 chr2L 16217660 16217660 8 7133321 31.5 35.0 33.2 0.2 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-843 344 chr2L 9085909 9085913 chr2L 9086040 9086044 5 131 0.0 11.5 5.8 0.7 135 chr2L 9085909 intron Toll-4 + chr2L 9085976 intron Toll-4 + chr2L 9086044 intron Toll-4 + chr2L_5_9085001 chr2L_9085001 RAL-843 345 chr2L 9095521 9095602 chr2L 9095658 9095739 31 137 9.5 6.5 8.0 3.4 218 chr2L 9095521 intergenic not near genes chr2L 9095630 intergenic not near genes chr2L 9095739 intergenic not near genes chr2L_31_9095001 chr2L_9095001 RAL-843 346 chr2L 9128525 9128603 chr2L 9128673 9128744 44 144 5.0 7.0 6.0 6.3 219 chr2L 9128525 intron CG32982 + chr2L 9128634 intron CG32982 + chr2L 9128744 intron CG32982 + chr2L_44_9125001 chr2L_9125001 RAL-843 347 chr2L 9148535 9148606 chr2L 9148672 9148743 10 136 7.0 6.5 6.8 1.3 208 chr2L 9148535 intron CG32982 + chr2L 9148639 intron CG32982 + chr2L 9148743 intron CG32982 + chr2L_10_9145001 chr2L_9145001 RAL-843 348 chr2L 9173028 9173092 chr2L 9173155 9173219 17 125 3.5 6.5 5.0 2.8 191 chr2L 9173028 intron tai + chr2L 9173124 intron tai + chr2L 9173219 intron tai + chr2L_17_9170001 chr2L_9170001 RAL-843 349 chr2L 9190894 9190953 chr2L 9191033 9191079 4 136 0.0 11.5 5.8 0.6 185 chr2L 9190894 intron tai + chr2L 9190986 intron tai + chr2L 9191079 intron tai + chr2L_4_9190001 chr2L_9190001 RAL-843 350 chr2L 9195821 9195882 chr2L 9195954 9196015 29 133 8.0 10.0 9.0 2.9 194 chr2L 9195821 intron tai + chr2L 9195918 intron tai + chr2L 9196015 intron tai + chr2L_29_9195001 chr2L_9195001 RAL-843 351 chr2L 9217949 9217999 chr2L 9222786 9222844 Doc 15 4840 4.5 1.5 3.0 3.8 4895 chr2L 9217949 intron tai + chr2L 9220396 intron tai + chr2L 9222844 intron tai + chr2L_15_9220001 chr2L_9220001 RAL-843 352 chr2L 9227198 9227248 chr2L 9227331 9227380 4 133 7.0 8.0 7.5 0.5 182 chr2L 9227198 intron tai + chr2L 9227289 intron tai + chr2L 9227380 intron tai + chr2L_4_9225001 chr2L_9225001 RAL-843 353 chr2L 9251096 9251168 chr2L 9251243 9251299 38 145 7.0 7.0 7.0 4.8 203 chr2L 9251096 intergenic aust -,borr - chr2L 9251198 intergenic aust -,borr - chr2L 9251299 intergenic borr -,aust - chr2L_38_9250001 chr2L_9250001 RAL-843 354 chr2L 9264312 9264354 chr2L 9264462 9264504 14 149 10.5 7.5 9.0 1.4 192 chr2L 9264312 intron Ggamma30A + chr2L 9264408 intron Ggamma30A + chr2L 9264504 intron Ggamma30A + chr2L_14_9260001 chr2L_9260001 RAL-843 355 chr2L 9277112 9277183 chr2L 9277254 9277285 22 130 5.5 9.0 7.2 2.7 173 chr2L 9277112 intron Ggamma30A + chr2L 9277198 intron Ggamma30A + chr2L 9277285 intron Ggamma30A + chr2L_22_9275001 chr2L_9275001 RAL-843 356 chr2L 9279952 9280011 chr2L 9280081 9280155 21 142 4.5 4.0 4.2 4.0 203 chr2L 9279952 intron Ggamma30A + chr2L 9280054 intron Ggamma30A + chr2L 9280155 intron Ggamma30A + chr2L_21_9280001 chr2L_9280001 RAL-843 357 chr2L 9283159 9283180 chr2L 9283286 9283307 14 127 18.0 11.0 14.5 0.9 148 chr2L 9283159 intron Ggamma30A + chr2L 9283233 intron Ggamma30A + chr2L 9283307 intron Ggamma30A + chr2L_14_9280001 chr2L_9280001 RAL-843 358 chr2L 9297328 9297400 chr2L 9297455 9297527 31 126 12.5 9.0 10.8 2.6 199 chr2L 9297328 3` UTR Ggamma30A + chr2L 9297428 3` UTR Ggamma30A + chr2L 9297527 3` UTR Ggamma30A + chr2L_31_9295001 chr2L_9295001 RAL-843 359 chr2L 9300651 9300703 chr2L 9300797 9300849 8 145 6.5 7.0 6.8 1.0 198 chr2L 9300651 3` UTR Ggamma30A + chr2L 9300750 3` UTR Ggamma30A + chr2L 9300849 3` UTR Ggamma30A + chr2L_8_9300001 chr2L_9300001 RAL-843 360 chr2L 9304299 9304504 chr2L 9304433 9304633 40 128 0.0 0.0 0.0 40.0 334 chr2L 9304299 intergenic CR42844 - chr2L 9304466 3` UTR CR42844 - chr2L 9304633 3` UTR CR42844 - chr2L_40_9300001 chr2L_9300001 RAL-843 361 chr2L 9334966 9335030 chr2L 9335095 9335158 16 129 4.5 0.0 2.2 5.0 192 chr2L 9334966 intron Eaat1 + chr2L 9335062 intron Eaat1 + chr2L 9335158 intron Eaat1 + chr2L_16_9335001 chr2L_9335001 RAL-843 362 chr2L 9347572 9347594 chr2L 9347714 9347736 9 142 0.0 0.0 0.0 9.0 164 chr2L 9347572 intergenic not near genes chr2L 9347654 intergenic not near genes chr2L 9347736 intergenic not near genes chr2L_9_9345001 chr2L_9345001 RAL-843 363 chr2L 9364278 9364333 chr2L 9364427 9364458 10 139 0.0 14.0 7.0 1.2 180 chr2L 9364278 intergenic CR43404 + chr2L 9364368 intron CR43404 + chr2L 9364458 5` UTR CR43404 + chr2L_10_9360001 chr2L_9360001 RAL-843 364 chr2L 9380193 9380254 chr2L 9380338 9380399 27 144 6.5 5.5 6.0 3.9 206 chr2L 9380193 exon Shawl - chr2L 9380296 intron Shawl - chr2L 9380399 intron Shawl - chr2L_27_9380001 chr2L_9380001 RAL-843 365 chr2L 9387204 9387274 chr2L 9387352 9387422 22 148 4.5 3.5 4.0 4.4 218 chr2L 9387204 intron Shawl - chr2L 9387313 intron Shawl - chr2L 9387422 intron,5` UTR Shawl -,Aldh + chr2L_22_9385001 chr2L_9385001 RAL-843 366 chr2L 9391536 9391613 chr2L 9391696 9391752 36 159 8.0 7.5 7.8 4.1 216 chr2L 9391536 intron,3` UTR Shawl -,Aldh + chr2L 9391644 intron Shawl - chr2L 9391752 intron Shawl - chr2L_36_9390001 chr2L_9390001 RAL-843 367 chr2L 9393460 9393524 chr2L 9396477 9396541 jockey 30 3016 9.0 14.0 11.5 2.4 3081 chr2L 9393460 intron Shawl - chr2L 9395000 intron Shawl - chr2L 9396541 intron Shawl - chr2L_30_9395001 chr2L_9395001 RAL-843 368 chr2L 9407861 9407906 chr2L 9407993 9408023 17 131 7.0 10.5 8.8 1.7 162 chr2L 9407861 intron Shawl - chr2L 9407942 intron Shawl - chr2L 9408023 intron Shawl - chr2L_17_9405001 chr2L_9405001 RAL-843 369 chr2L 9413453 9413508 chr2L 9413580 9413635 17 127 9.0 0.0 4.5 3.1 182 chr2L 9413453 intron Shawl - chr2L 9413544 intron Shawl - chr2L 9413635 intron Shawl - chr2L_17_9410001 chr2L_9410001 RAL-843 370 chr2L 9415756 9415834 chr2L 9415882 9415961 21 121 0.0 4.5 2.2 6.6 205 chr2L 9415756 intergenic not near genes chr2L 9415858 intergenic not near genes chr2L 9415961 intergenic not near genes chr2L_21_9415001 chr2L_9415001 RAL-843 371 chr2L 9454929 9455005 chr2L 9455081 9455159 22 152 7.5 4.0 5.8 3.2 230 chr2L 9454929 intron numb + chr2L 9455044 intron numb + chr2L 9455159 intron numb + chr2L_22_9455001 chr2L_9455001 RAL-843 372 chr2L 9505014 9505044 chr2L 9505147 9505177 7 133 7.0 4.0 5.5 1.1 163 chr2L 9505014 intron CG33298 + chr2L 9505096 intron CG33298 + chr2L 9505177 intron CG33298 + chr2L_7_9505001 chr2L_9505001 RAL-843 373 chr2L 9506329 9506372 chr2L 9506461 9506504 11 131 6.5 8.0 7.2 1.3 175 chr2L 9506329 intron CG33298 + chr2L 9506416 intron CG33298 + chr2L 9506504 intron CG33298 + chr2L_11_9505001 chr2L_9505001 RAL-843 374 chr2L 9527272 9527311 chr2L 9527404 9527443 19 131 3.5 6.0 4.8 3.3 171 chr2L 9527272 intron Oatp30B + chr2L 9527358 intron Oatp30B + chr2L 9527443 intron Oatp30B + chr2L_19_9525001 chr2L_9525001 RAL-843 375 chr2L 9719752 9719780 chr2L 9719885 9719913 9 132 0.0 11.0 5.5 1.4 161 chr2L 9719752 intron Nckx30C - chr2L 9719832 intron Nckx30C - chr2L 9719913 intron Nckx30C - chr2L_9_9715001 chr2L_9715001 RAL-843 376 chr2L 9770720 9770763 chr2L 9770875 9770918 17 154 8.5 7.5 8.0 1.9 198 chr2L 9770720 intron ppk18 - chr2L 9770819 intron ppk18 - chr2L 9770918 exon ppk18 - chr2L_17_9770001 chr2L_9770001 RAL-843 377 chr2L 9837383 9837447 chr2L 9837511 9837575 25 128 1.5 0.0 0.8 13.9 192 chr2L 9837383 intron nAChRalpha6 - chr2L 9837479 intron nAChRalpha6 - chr2L 9837575 intron nAChRalpha6 - chr2L_25_9835001 chr2L_9835001 RAL-843 378 chr2L 9843763 9843835 chr2L 9843892 9843964 37 128 9.0 7.0 8.0 4.1 201 chr2L 9843763 intron nAChRalpha6 - chr2L 9843864 intron nAChRalpha6 - chr2L 9843964 intron nAChRalpha6 - chr2L_37_9840001 chr2L_9840001 RAL-843 379 chr2L 9871475 9871532 chr2L 9871609 9871666 22 133 3.0 6.0 4.5 4.0 191 chr2L 9871475 intron nAChRalpha6 - chr2L 9871570 intron nAChRalpha6 - chr2L 9871666 intron nAChRalpha6 - chr2L_22_9870001 chr2L_9870001 RAL-843 380 chr2L 9892479 9892533 chr2L 9892605 9892659 19 126 5.5 9.5 7.5 2.2 180 chr2L 9892479 intron mtDNA-helicase - chr2L 9892569 intron mtDNA-helicase - chr2L 9892659 exon mtDNA-helicase - chr2L_19_9890001 chr2L_9890001 RAL-843 381 chr2L 9973699 9973755 chr2L 9980849 9980917 HMS-Beagle 34 7165 9.5 10.0 9.8 3.1 7218 chr2L 9973699 intergenic not near genes chr2L 9977308 intergenic not near genes chr2L 9980917 intergenic not near genes chr2L_34_9975001 chr2L_9975001 RAL-843 382 chr2L 9986339 9986374 chr2L 9986453 9986508 14 133 6.5 11.0 8.8 1.4 169 chr2L 9986339 intron bib + chr2L 9986424 intron bib + chr2L 9986508 intron bib + chr2L_14_9985001 chr2L_9985001 RAL-843 383 chr2L 10041484 10041499 chr2L 10041616 10041631 8 132 10.0 8.0 9.0 0.8 147 chr2L 10041484 intergenic not near genes chr2L 10041558 intergenic not near genes chr2L 10041631 intergenic not near genes chr2L_8_10040001 chr2L_10040001 RAL-843 384 chr2L 10051680 10051719 chr2L 10051815 10051854 11 130 20.0 9.0 14.5 0.7 174 chr2L 10051680 5` UTR CR44874 + chr2L 10051767 5` UTR CR44874 + chr2L 10051854 5` UTR CR44874 + chr2L_11_10050001 chr2L_10050001 RAL-843 385 chr2L 10051724 10051753 chr2L 10051812 10051833 16 125 6.5 8.0 7.2 2.0 109 chr2L 10051724 5` UTR CR44874 + chr2L 10051778 5` UTR CR44874 + chr2L 10051833 5` UTR CR44874 + chr2L_16_10050001 chr2L_10050001 RAL-843 386 chr2L 10081914 10081922 chr2L 10082046 10082054 4 132 9.5 6.5 8.0 0.4 140 chr2L 10081914 exon CG44153 - chr2L 10081984 intron CG44153 - chr2L 10082054 intron CG44153 - chr2L_4_10080001 chr2L_10080001 RAL-843 387 chr2L 10087449 10087477 chr2L 10087554 10087598 16 122 18.5 11.0 14.8 1.0 149 chr2L 10087449 intron CG44153 - chr2L 10087524 intron CG44153 - chr2L 10087598 intron CG44153 - chr2L_16_10085001 chr2L_10085001 RAL-843 388 chr2L 10134938 10135008 chr2L 10135503 10135507 22 568 1.5 7.0 4.2 4.2 569 chr2L 10134938 intron CG44153 - chr2L 10135222 intron CG44153 - chr2L 10135507 intron CG44153 - chr2L_22_10135001 chr2L_10135001 RAL-843 389 chr2L 10153161 10153175 chr2L 10153287 10153292 4 125 21.0 6.0 13.5 0.3 131 chr2L 10153161 intron,exon CG44153 -,CG4839 + chr2L 10153226 intron,exon CG44153 -,CG4839 + chr2L 10153292 intron,intron CG44153 -,CG4839 + chr2L_4_10150001 chr2L_10150001 RAL-843 390 chr2L 10153179 10153200 chr2L 10153286 10153312 17 119 15.0 6.0 10.5 1.5 133 chr2L 10153179 intron,exon CG44153 -,CG4839 + chr2L 10153246 intron,intron CG44153 -,CG4839 + chr2L 10153312 intron,intron CG44153 -,CG4839 + chr2L_17_10150001 chr2L_10150001 RAL-843 391 chr2L 10153201 10153230 chr2L 10153280 10153340 15 118 10.5 5.0 7.8 1.7 139 chr2L 10153201 intron,exon CG44153 -,CG4839 + chr2L 10153270 intron,intron CG44153 -,CG4839 + chr2L 10153340 intron,exon CG44153 -,CG4839 + chr2L_15_10150001 chr2L_10150001 RAL-843 392 chr2L 10156272 10156346 chr2L 10163792 10163866 blood 35 7518 10.0 6.5 8.2 3.8 7594 chr2L 10156272 intron,3` UTR CG44153 -,CG4839 + chr2L 10160069 intron CG44153 - chr2L 10163866 intron CG44153 - chr2L_35_10160001 chr2L_10160001 RAL-843 393 chr2L 10177361 10177387 chr2L 10177491 10177517 9 130 3.5 6.5 5.0 1.5 156 chr2L 10177361 intron CG44153 - chr2L 10177439 intron CG44153 - chr2L 10177517 intron CG44153 - chr2L_9_10175001 chr2L_10175001 RAL-843 394 chr2L 10184958 10184983 chr2L 10185054 10185092 8 114 16.0 13.5 14.8 0.5 134 chr2L 10184958 exon Sur - chr2L 10185025 exon Sur - chr2L 10185092 exon Sur - chr2L_8_10185001 chr2L_10185001 RAL-843 395 chr2L 10191410 10191489 chr2L 10191542 10191622 26 133 6.0 2.0 4.0 5.2 212 chr2L 10191410 intron,exon Sur -,CG31874 - chr2L 10191516 intron Sur - chr2L 10191622 exon Sur - chr2L_26_10190001 chr2L_10190001 RAL-843 396 chr2L 10204464 10204522 chr2L 10204597 10204655 15 133 8.0 9.5 8.8 1.5 191 chr2L 10204464 intergenic CG34159 -,CG5734 - chr2L 10204560 intergenic CG5734 -,CG34159 - chr2L 10204655 intergenic CG5734 -,CG34159 - chr2L_15_10200001 chr2L_10200001 RAL-843 397 chr2L 10209803 10209842 chr2L 10209924 10209969 12 126 8.0 4.5 6.2 1.7 166 chr2L 10209803 intergenic CR44845 +,CG5727 -,CG5731 - chr2L 10209886 3` UTR CG5727 - chr2L 10209969 3` UTR CG5727 - chr2L_12_10205001 chr2L_10205001 RAL-843 398 chr2L 10281642 10281687 chr2L 10281785 10281843 17 148 0.0 8.5 4.2 3.3 201 chr2L 10281642 intergenic CG5604 - chr2L 10281742 intergenic CG5604 - chr2L 10281843 intergenic CG5604 - chr2L_17_10280001 chr2L_10280001 RAL-843 399 chr2L 10347055 10347071 chr2L 10347191 10347192 4 132 21.5 4.5 13.0 0.3 137 chr2L 10347055 exon CG5022 + chr2L 10347124 exon CG5022 + chr2L 10347192 exon CG5022 + chr2L_4_10345001 chr2L_10345001 RAL-843 400 chr2L 10347077 10347126 chr2L 10347189 10347235 30 119 8.0 4.0 6.0 4.3 158 chr2L 10347077 exon CG5022 + chr2L 10347156 exon CG5022 + chr2L 10347235 exon CG5022 + chr2L_30_10345001 chr2L_10345001 RAL-843 401 chr2L 10458184 10458220 chr2L 10458330 10458366 16 146 0.0 0.0 0.0 16.0 182 chr2L 10458184 intron LM408 + chr2L 10458275 intron LM408 + chr2L 10458366 intron LM408 + chr2L_16_10455001 chr2L_10455001 RAL-843 402 chr2L 10524691 10524876 chr2L 10524845 10525033 18 154 0.0 0.0 0.0 18.0 342 chr2L 10524691 intergenic not near genes chr2L 10524862 intergenic not near genes chr2L 10525033 intergenic not near genes chr2L_18_10520001 chr2L_10520001 RAL-843 403 chr2L 10563872 10563879 chr2L 10564015 10564022 4 143 8.5 6.0 7.2 0.5 150 chr2L 10563872 intron Trim9 + chr2L 10563947 intron Trim9 + chr2L 10564022 intron Trim9 + chr2L_4_10560001 chr2L_10560001 RAL-843 404 chr2L 10563889 10563943 chr2L 10564006 10564079 22 136 3.5 5.0 4.2 4.2 190 chr2L 10563889 intron Trim9 + chr2L 10563984 intron Trim9 + chr2L 10564079 intron Trim9 + chr2L_22_10560001 chr2L_10560001 RAL-843 405 chr2L 10589021 10589081 chr2L 10589147 10589207 16 126 6.0 6.0 6.0 2.3 186 chr2L 10589021 intron Trim9 + chr2L 10589114 intron Trim9 + chr2L 10589207 intron Trim9 + chr2L_16_10585001 chr2L_10585001 RAL-843 406 chr2L 10592795 10592870 chr2L 10600505 10600582 opus 9 7711 4.5 4.0 4.2 1.7 7787 chr2L 10592795 intron Trim9 + chr2L 10596688 intron Trim9 + chr2L 10600582 intron Trim9 + chr2L_9_10595001 chr2L_10595001 RAL-843 407 chr2L 10674620 10674684 chr2L 10675169 10675203 26 540 7.0 14.0 10.5 2.3 583 chr2L 10674620 intergenic not near genes chr2L 10674912 intergenic not near genes chr2L 10675203 intergenic not near genes chr2L_26_10670001 chr2L_10670001 RAL-843 408 chr2L 10704866 10704947 chr2L 10705011 10705092 19 144 3.0 3.0 3.0 4.8 226 chr2L 10704866 intron,exon Lip2 -,CG6415 + chr2L 10704979 intron Lip2 - chr2L 10705092 exon Lip2 - chr2L_19_10700001 chr2L_10700001 RAL-843 409 chr2L 10707619 10707671 chr2L 10707750 10707790 17 129 13.5 0.0 6.8 2.2 171 chr2L 10707619 intron Lip2 - chr2L 10707704 intron Lip2 - chr2L 10707790 intron Lip2 - chr2L_17_10705001 chr2L_10705001 RAL-843 410 chr2L 10723487 10723553 chr2L 10723631 10723697 17 144 5.5 4.0 4.8 2.9 210 chr2L 10723487 intergenic not near genes chr2L 10723592 intergenic not near genes chr2L 10723697 intergenic not near genes chr2L_17_10720001 chr2L_10720001 RAL-843 411 chr2L 10812008 10812076 chr2L 10812152 10812220 16 143 3.5 8.0 5.8 2.4 212 chr2L 10812008 intron Nos - chr2L 10812114 intron Nos - chr2L 10812220 intron Nos - chr2L_16_10810001 chr2L_10810001 RAL-843 412 chr2L 10862807 10862871 chr2L 10864466 10864471 Rt1c 28 1653 12.5 17.0 14.8 1.8 1664 chr2L 10862807 3` UTR CR43807 - chr2L 10863639 intron CR43807 - chr2L 10864471 3` UTR CR43807 - chr2L_28_10860001 chr2L_10860001 RAL-843 413 chr2L 10946908 10946923 chr2L 10956173 10956188 roo 6 9264 22.0 13.5 17.8 0.3 9280 chr2L 10946908 intron dpr2 - chr2L 10951548 intron dpr2 - chr2L 10956188 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-843 414 chr2L 10946924 10946970 chr2L 10956169 10956235 roo 16 9260 11.5 12.5 12.0 1.2 9311 chr2L 10946924 intron dpr2 - chr2L 10951580 intron dpr2 - chr2L 10956235 intron dpr2 - chr2L_16_10950001 chr2L_10950001 RAL-843 415 chr2L 10956925 10956987 chr2L 10957061 10957123 14 136 6.0 5.0 5.5 2.2 198 chr2L 10956925 intron dpr2 - chr2L 10957024 intron dpr2 - chr2L 10957123 intron dpr2 - chr2L_14_10955001 chr2L_10955001 RAL-843 416 chr2L 10961537 10961572 chr2L 10961764 10961783 8 224 0.0 13.0 6.5 1.1 246 chr2L 10961537 intron dpr2 - chr2L 10961660 intron dpr2 - chr2L 10961783 intron dpr2 - chr2L_8_10960001 chr2L_10960001 RAL-843 417 chr2L 10996310 10996344 chr2L 10996412 10996470 15 122 2.0 5.5 3.8 3.1 160 chr2L 10996310 3` UTR CG16833 + chr2L 10996390 3` UTR CG16833 + chr2L 10996470 3` UTR CG16833 + chr2L_15_10995001 chr2L_10995001 RAL-843 418 chr2L 11012270 11012312 chr2L 11012404 11012450 16 138 10.5 16.5 13.5 1.1 180 chr2L 11012270 intergenic dUTPase + chr2L 11012360 intergenic dUTPase + chr2L 11012450 intergenic dUTPase + chr2L_16_11010001 chr2L_11010001 RAL-843 419 chr2L 11016651 11016679 chr2L 11016804 11016832 4 153 5.5 5.5 5.5 0.6 181 chr2L 11016651 intron Samuel - chr2L 11016742 intron Samuel - chr2L 11016832 intron Samuel - chr2L_4_11015001 chr2L_11015001 RAL-843 420 chr2L 11064264 11064292 chr2L 11064408 11064436 17 143 3.5 19.5 11.5 1.4 172 chr2L 11064264 intron Samuel - chr2L 11064350 intron Samuel - chr2L 11064436 intron Samuel - chr2L_17_11060001 chr2L_11060001 RAL-843 421 chr2L 11174589 11174659 chr2L 11174716 11174766 28 105 9.0 10.5 9.8 2.6 177 chr2L 11174589 intron Ca-beta - chr2L 11174678 intron Ca-beta - chr2L 11174766 intron Ca-beta - chr2L_28_11170001 chr2L_11170001 RAL-843 422 chr2L 11175453 11175532 chr2L 11175583 11175662 25 127 8.5 9.0 8.8 2.6 209 chr2L 11175453 intron Ca-beta - chr2L 11175558 intron Ca-beta - chr2L 11175662 intron Ca-beta - chr2L_25_11175001 chr2L_11175001 RAL-843 423 chr2L 11183740 11183808 chr2L 11183886 11183954 19 146 6.5 11.5 9.0 1.9 214 chr2L 11183740 intron Ca-beta - chr2L 11183847 intron Ca-beta - chr2L 11183954 intron Ca-beta - chr2L_19_11180001 chr2L_11180001 RAL-843 424 chr2L 11191428 11191447 chr2L 11191556 11191575 8 128 7.0 7.0 7.0 1.0 147 chr2L 11191428 intron Ca-beta - chr2L 11191502 intron Ca-beta - chr2L 11191575 intron Ca-beta - chr2L_8_11190001 chr2L_11190001 RAL-843 425 chr2L 11246716 11246796 chr2L 11246865 11246928 29 147 6.0 6.0 6.0 4.1 212 chr2L 11246716 intron ab + chr2L 11246822 intron ab + chr2L 11246928 intron ab + chr2L_29_11245001 chr2L_11245001 RAL-843 426 chr2L 11292330 11292406 chr2L 11292461 11292538 16 131 5.0 7.0 6.0 2.3 208 chr2L 11292330 intergenic not near genes chr2L 11292434 intergenic not near genes chr2L 11292538 intergenic not near genes chr2L_16_11290001 chr2L_11290001 RAL-843 427 chr2L 11315228 11315270 chr2L 11317682 11317724 G2 19 2452 3.0 9.0 6.0 2.7 2496 chr2L 11315228 intergenic not near genes chr2L 11316476 intergenic not near genes chr2L 11317724 intergenic not near genes chr2L_19_11315001 chr2L_11315001 RAL-843 428 chr2L 11339708 11339743 chr2L 11339815 11339870 12 116 7.5 5.0 6.2 1.7 162 chr2L 11339708 intergenic not near genes chr2L 11339789 intergenic not near genes chr2L 11339870 intergenic not near genes chr2L_12_11335001 chr2L_11335001 RAL-843 429 chr2L 11357936 11358005 chr2L 11358064 11358133 18 128 6.5 4.5 5.5 2.8 197 chr2L 11357936 intergenic not near genes chr2L 11358034 intergenic not near genes chr2L 11358133 intergenic not near genes chr2L_18_11355001 chr2L_11355001 RAL-843 430 chr2L 11380599 11380641 chr2L 11380689 11380760 19 124 2.0 5.5 3.8 4.0 161 chr2L 11380599 intergenic not near genes chr2L 11380680 intergenic not near genes chr2L 11380760 intergenic not near genes chr2L_19_11380001 chr2L_11380001 RAL-843 431 chr2L 11413240 11413314 chr2L 11413414 11413487 28 172 8.5 5.5 7.0 3.5 247 chr2L 11413240 intergenic not near genes chr2L 11413364 intergenic not near genes chr2L 11413487 intergenic not near genes chr2L_28_11410001 chr2L_11410001 RAL-843 432 chr2L 11418606 11418686 chr2L 11418735 11418815 36 127 7.5 4.0 5.8 5.3 209 chr2L 11418606 intergenic not near genes chr2L 11418710 intergenic not near genes chr2L 11418815 intergenic not near genes chr2L_36_11415001 chr2L_11415001 RAL-843 433 chr2L 11450076 11450150 chr2L 11450212 11450282 18 134 0.0 5.0 2.5 5.1 206 chr2L 11450076 intergenic not near genes chr2L 11450179 intergenic not near genes chr2L 11450282 intergenic not near genes chr2L_18_11450001 chr2L_11450001 RAL-843 434 chr2L 11491084 11491157 chr2L 11491215 11491262 14 126 6.0 9.5 7.8 1.6 178 chr2L 11491084 intergenic not near genes chr2L 11491173 intergenic not near genes chr2L 11491262 intergenic not near genes chr2L_14_11490001 chr2L_11490001 RAL-843 435 chr2L 11537171 11537206 chr2L 11537286 11537294 6 113 5.5 8.0 6.8 0.8 123 chr2L 11537171 intergenic CG43438 + chr2L 11537232 intergenic CG43438 + chr2L 11537294 intergenic CG43438 + chr2L_6_11535001 chr2L_11535001 RAL-843 436 chr2L 11540542 11540610 chr2L 11547997 11548062 Tabor 15 7454 6.0 8.0 7.0 1.9 7520 chr2L 11540542 intergenic not near genes chr2L 11544302 intergenic not near genes chr2L 11548062 intergenic not near genes chr2L_15_11540001 chr2L_11540001 RAL-843 437 chr2L 11561681 11561714 chr2L 11561817 11561840 6 130 12.0 10.5 11.2 0.5 159 chr2L 11561681 5` UTR CR44495 + chr2L 11561760 5` UTR CR44495 + chr2L 11561840 5` UTR CR44495 + chr2L_6_11560001 chr2L_11560001 RAL-843 438 chr2L 11561720 11561755 chr2L 11561814 11561837 16 125 5.0 10.0 7.5 1.9 117 chr2L 11561720 5` UTR CR44495 + chr2L 11561778 5` UTR CR44495 + chr2L 11561837 5` UTR CR44495 + chr2L_16_11560001 chr2L_11560001 RAL-843 439 chr2L 11563593 11563656 chr2L 11568847 11568910 copia 26 5251 4.0 7.5 5.8 3.8 5317 chr2L 11563593 intergenic not near genes chr2L 11566252 intergenic not near genes chr2L 11568910 intergenic not near genes chr2L_26_11565001 chr2L_11565001 RAL-843 440 chr2L 11614042 11614086 chr2L 11615547 11615571 hopper2 19 1520 5.0 10.0 7.5 2.2 1529 chr2L 11614042 intron kek2 + chr2L 11614806 intron kek2 + chr2L 11615571 intron kek2 + chr2L_19_11610001 chr2L_11610001 RAL-843 441 chr2L 11661140 11661208 chr2L 11661272 11661346 32 136 8.0 6.5 7.2 3.9 206 chr2L 11661140 intergenic CR44497 - chr2L 11661243 intergenic CR44497 -,CR44479 - chr2L 11661346 intergenic CR44479 -,CR44497 - chr2L_32_11660001 chr2L_11660001 RAL-843 442 chr2L 11672092 11672167 chr2L 11672249 11672324 24 157 4.5 7.0 5.8 3.5 232 chr2L 11672092 intergenic not near genes chr2L 11672208 intergenic not near genes chr2L 11672324 intergenic not near genes chr2L_24_11670001 chr2L_11670001 RAL-843 443 chr2L 11688721 11688774 chr2L 11688848 11688901 20 127 12.5 11.5 12.0 1.5 180 chr2L 11688721 intergenic not near genes chr2L 11688811 intergenic not near genes chr2L 11688901 intergenic not near genes chr2L_20_11685001 chr2L_11685001 RAL-843 444 chr2L 11704592 11704667 chr2L 11704713 11704793 14 122 5.0 4.5 4.8 2.4 201 chr2L 11704592 intergenic not near genes chr2L 11704692 intergenic not near genes chr2L 11704793 intergenic not near genes chr2L_14_11700001 chr2L_11700001 RAL-843 445 chr2L 11713474 11713476 chr2L 11720984 11720984 blood 4 7514 20.0 9.0 14.5 0.3 7510 chr2L 11713474 intergenic not near genes chr2L 11717229 intergenic not near genes chr2L 11720984 intergenic CR44143 + chr2L_4_11715001 chr2L_11715001 RAL-843 446 chr2L 11713478 11713528 chr2L 11720982 11721044 blood 20 7511 8.5 9.0 8.8 2.0 7566 chr2L 11713478 intergenic not near genes chr2L 11717261 intergenic not near genes chr2L 11721044 intergenic CR44143 + chr2L_20_11715001 chr2L_11715001 RAL-843 447 chr2L 11784494 11784508 chr2L 11784621 11784635 6 127 3.5 5.5 4.5 1.1 141 chr2L 11784494 intergenic not near genes chr2L 11784564 intergenic not near genes chr2L 11784635 intergenic not near genes chr2L_6_11780001 chr2L_11780001 RAL-843 448 chr2L 11820389 11820455 chr2L 11820524 11820586 33 131 0.5 13.5 7.0 4.1 197 chr2L 11820389 intron Pde1c - chr2L 11820488 intron Pde1c - chr2L 11820586 intron Pde1c - chr2L_33_11820001 chr2L_11820001 RAL-843 449 chr2L 11884010 11884073 chr2L 11884380 11884432 27 367 8.0 8.0 8.0 3.0 422 chr2L 11884010 intron Pde1c - chr2L 11884221 intron Pde1c - chr2L 11884432 intron Pde1c - chr2L_27_11880001 chr2L_11880001 RAL-843 450 chr2L 11913267 11913320 chr2L 11913400 11913473 15 140 8.0 4.5 6.2 2.1 206 chr2L 11913267 intron Pde1c - chr2L 11913370 intron Pde1c - chr2L 11913473 intron Pde1c - chr2L_15_11910001 chr2L_11910001 RAL-843 451 chr2L 11927287 11927312 chr2L 11927429 11927456 12 144 11.5 9.5 10.5 1.0 169 chr2L 11927287 intron Pde1c - chr2L 11927372 intron Pde1c - chr2L 11927456 intron Pde1c - chr2L_12_11925001 chr2L_11925001 RAL-843 452 chr2L 11927313 11927352 chr2L 11927426 11927497 12 137 6.5 8.0 7.2 1.5 184 chr2L 11927313 intron Pde1c - chr2L 11927405 intron Pde1c - chr2L 11927497 intron Pde1c - chr2L_12_11925001 chr2L_11925001 RAL-843 453 chr2L 11944395 11944422 chr2L 11944531 11944539 9 137 15.0 0.0 7.5 1.1 144 chr2L 11944395 intron Cry + chr2L 11944467 intron Cry + chr2L 11944539 intron Cry + chr2L_9_11940001 chr2L_11940001 RAL-843 454 chr2L 11951964 11951996 chr2L 11952102 11952134 10 138 2.5 6.5 4.5 1.8 170 chr2L 11951964 intergenic CR43314 - chr2L 11952049 intergenic CR43314 - chr2L 11952134 intergenic CR43314 - chr2L_10_11950001 chr2L_11950001 RAL-843 455 chr2L 11976039 11976055 chr2L 11976166 11976182 7 127 20.0 1.5 10.8 0.6 143 chr2L 11976039 intergenic not near genes chr2L 11976110 intergenic not near genes chr2L 11976182 intergenic not near genes chr2L_7_11975001 chr2L_11975001 RAL-843 456 chr2L 11976060 11976094 chr2L 11976187 11976221 13 127 10.0 0.5 5.2 2.1 161 chr2L 11976060 intergenic not near genes chr2L 11976140 intergenic not near genes chr2L 11976221 intergenic not near genes chr2L_13_11975001 chr2L_11975001 RAL-843 457 chr2L 12026725 12026775 chr2L 12026964 12027006 9 231 4.0 0.0 2.0 3.0 281 chr2L 12026725 intergenic not near genes chr2L 12026866 intergenic not near genes chr2L 12027006 intergenic dmGlut + chr2L_9_12025001 chr2L_12025001 RAL-843 458 chr2L 12067296 12067348 chr2L 12074398 12074450 297 25 7102 8.0 7.0 7.5 2.9 7154 chr2L 12067296 intergenic not near genes chr2L 12070873 intergenic not near genes chr2L 12074450 intergenic not near genes chr2L_25_12070001 chr2L_12070001 RAL-843 459 chr2L 12132688 12132709 chr2L 12132824 12132845 6 136 8.0 11.0 9.5 0.6 157 chr2L 12132688 intron rho-6 - chr2L 12132766 intron rho-6 - chr2L 12132845 intron rho-6 - chr2L_6_12130001 chr2L_12130001 RAL-843 460 chr2L 12132713 12132750 chr2L 12132849 12132870 8 134 4.0 15.5 9.8 0.7 157 chr2L 12132713 intron rho-6 - chr2L 12132792 intron rho-6 - chr2L 12132870 intron rho-6 - chr2L_8_12130001 chr2L_12130001 RAL-843 461 chr2L 12148449 12148519 chr2L 12148779 12148856 13 331 0.0 7.0 3.5 2.9 407 chr2L 12148449 intron CG31760 + chr2L 12148652 intron CG31760 + chr2L 12148856 intron CG31760 + chr2L_13_12145001 chr2L_12145001 RAL-843 462 chr2L 12175766 12175793 chr2L 12175897 12175925 6 131 16.5 0.0 8.2 0.7 159 chr2L 12175766 intron,exon aret +,atilla - chr2L 12175846 intron,intron aret +,atilla - chr2L 12175925 intron,intron aret +,atilla - chr2L_6_12175001 chr2L_12175001 RAL-843 463 chr2L 12192310 12192368 chr2L 12192485 12192543 18 175 6.0 9.0 7.5 2.1 233 chr2L 12192310 intron aret + chr2L 12192426 intron aret + chr2L 12192543 intron aret + chr2L_18_12190001 chr2L_12190001 RAL-843 464 chr2L 12198315 12198343 chr2L 12198444 12198472 13 129 8.5 9.0 8.8 1.3 157 chr2L 12198315 intron aret + chr2L 12198394 intron aret + chr2L 12198472 intron aret + chr2L_13_12195001 chr2L_12195001 RAL-843 465 chr2L 12229545 12229595 chr2L 12229672 12229716 21 127 6.0 0.0 3.0 5.2 171 chr2L 12229545 intron aret + chr2L 12229630 intron aret + chr2L 12229716 intron aret + chr2L_21_12225001 chr2L_12225001 RAL-843 466 chr2L 12272118 12272139 chr2L 12272246 12272267 6 128 11.5 6.0 8.8 0.6 149 chr2L 12272118 intron aret + chr2L 12272192 intron aret + chr2L 12272267 intron aret + chr2L_6_12270001 chr2L_12270001 RAL-843 467 chr2L 12275147 12275171 chr2L 12275284 12275308 10 136 8.0 6.0 7.0 1.2 161 chr2L 12275147 intron aret + chr2L 12275228 intron aret + chr2L 12275308 intron aret + chr2L_10_12275001 chr2L_12275001 RAL-843 468 chr2L 12283991 12284050 chr2L 12284131 12284176 17 136 9.0 6.0 7.5 2.0 185 chr2L 12283991 intron aret + chr2L 12284084 intron aret + chr2L 12284176 intron aret + chr2L_17_12280001 chr2L_12280001 RAL-843 469 chr2L 12294201 12294272 chr2L 12294333 12294404 19 132 7.5 1.0 4.2 3.7 203 chr2L 12294201 intron aret + chr2L 12294302 intron aret + chr2L 12294404 intron aret + chr2L_19_12290001 chr2L_12290001 RAL-843 470 chr2L 12305360 12305433 chr2L 12305498 12305571 30 136 10.0 8.0 9.0 3.0 211 chr2L 12305360 intron aret + chr2L 12305466 intron aret + chr2L 12305571 intron aret + chr2L_30_12305001 chr2L_12305001 RAL-843 471 chr2L 12309329 12309340 chr2L 12309456 12309456 4 124 13.5 12.5 13.0 0.3 127 chr2L 12309329 intron aret + chr2L 12309392 intron aret + chr2L 12309456 intron aret + chr2L_4_12305001 chr2L_12305001 RAL-843 472 chr2L 12309345 12309385 chr2L 12309447 12309486 16 116 8.5 11.5 10.0 1.5 141 chr2L 12309345 intron aret + chr2L 12309416 intron aret + chr2L 12309486 intron aret + chr2L_16_12305001 chr2L_12305001 RAL-843 473 chr2L 12387840 12387921 chr2L 12387996 12388051 36 145 6.5 8.5 7.5 4.2 211 chr2L 12387840 intron bru-2 + chr2L 12387946 intron bru-2 + chr2L 12388051 intron bru-2 + chr2L_36_12385001 chr2L_12385001 RAL-843 474 chr2L 12398633 12398654 chr2L 12398762 12398793 8 128 16.0 12.0 14.0 0.5 160 chr2L 12398633 exon Pkd2 + chr2L 12398713 exon Pkd2 + chr2L 12398793 exon Pkd2 + chr2L_8_12395001 chr2L_12395001 RAL-843 475 chr2L 12398656 12398684 chr2L 12398759 12398770 12 112 11.0 10.5 10.8 1.0 114 chr2L 12398656 exon Pkd2 + chr2L 12398713 exon Pkd2 + chr2L 12398770 exon Pkd2 + chr2L_12_12395001 chr2L_12395001 RAL-843 476 chr2L 12444826 12444900 chr2L 12444954 12445028 40 127 7.5 8.5 8.0 4.4 202 chr2L 12444826 intron Oatp33Ea - chr2L 12444927 intron Oatp33Ea - chr2L 12445028 intron Oatp33Ea - chr2L_40_12440001 chr2L_12440001 RAL-843 477 chr2L 12472481 12472500 chr2L 12472633 12472652 6 150 27.5 11.0 19.2 0.3 171 chr2L 12472481 intron bun - chr2L 12472566 intron bun - chr2L 12472652 intron bun - chr2L_6_12470001 chr2L_12470001 RAL-843 478 chr2L 12472503 12472544 chr2L 12472628 12472666 15 141 11.5 9.0 10.2 1.3 163 chr2L 12472503 intron bun - chr2L 12472584 intron bun - chr2L 12472666 intron bun - chr2L_15_12470001 chr2L_12470001 RAL-843 479 chr2L 12487843 12487914 chr2L 12487974 12488022 33 129 11.5 9.0 10.2 2.9 179 chr2L 12487843 intron bun - chr2L 12487932 intron bun - chr2L 12488022 intron bun - chr2L_33_12485001 chr2L_12485001 RAL-843 480 chr2L 12499003 12499017 chr2L 12499130 12499144 6 127 0.0 8.5 4.2 1.2 141 chr2L 12499003 intron bun - chr2L 12499074 intron bun - chr2L 12499144 intron bun - chr2L_6_12495001 chr2L_12495001 RAL-843 481 chr2L 12500588 12500615 chr2L 12500698 12500741 10 123 7.0 9.5 8.2 1.1 153 chr2L 12500588 intron bun - chr2L 12500664 intron bun - chr2L 12500741 intron bun - chr2L_10_12500001 chr2L_12500001 RAL-843 482 chr2L 12529199 12529242 chr2L 12529401 12529444 15 201 5.5 10.0 7.8 1.7 245 chr2L 12529199 intron bun - chr2L 12529322 intron bun - chr2L 12529444 intron bun - chr2L_15_12525001 chr2L_12525001 RAL-843 483 chr2L 12529246 12529253 chr2L 12529390 12529455 8 195 5.5 8.0 6.8 1.0 209 chr2L 12529246 intron bun - chr2L 12529350 intron bun - chr2L 12529455 intron bun - chr2L_8_12525001 chr2L_12525001 RAL-843 484 chr2L 12558273 12558339 chr2L 12565452 12565518 HMS-Beagle 19 7173 6.0 6.0 6.0 2.7 7245 chr2L 12558273 intergenic not near genes chr2L 12561896 intergenic not near genes chr2L 12565518 intergenic not near genes chr2L_19_12560001 chr2L_12560001 RAL-843 485 chr2L 12583452 12583514 chr2L 12583594 12583655 8 142 6.5 0.0 3.2 1.9 203 chr2L 12583452 5` UTR CR44595 + chr2L 12583554 intergenic CR44595 + chr2L 12583655 intergenic CR44595 + chr2L_8_12580001 chr2L_12580001 RAL-843 486 chr2L 12619864 12619905 chr2L 12619980 12620010 14 123 8.5 8.5 8.5 1.5 146 chr2L 12619864 intron,intron nub +,Ref2 - chr2L 12619937 intron,intron nub +,Ref2 - chr2L 12620010 intron,intron nub +,Ref2 - chr2L_14_12615001 chr2L_12615001 RAL-843 487 chr2L 12669968 12670030 chr2L 12670115 12670177 13 147 6.0 6.0 6.0 1.9 209 chr2L 12669968 intron pdm2 + chr2L 12670072 intron pdm2 + chr2L 12670177 intron pdm2 + chr2L_13_12670001 chr2L_12670001 RAL-843 488 chr2L 12693796 12693873 chr2L 12693923 12694000 20 126 12.5 12.5 12.5 1.5 204 chr2L 12693796 exon CG6153 + chr2L 12693898 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12694000 exon CG5780 - chr2L_20_12690001 chr2L_12690001 RAL-843 489 chr2L 12718721 12718788 chr2L 12718877 12718928 15 147 13.0 9.0 11.0 1.2 207 chr2L 12718721 intron Pih1D1 - chr2L 12718824 intron Pih1D1 - chr2L 12718928 intron Pih1D1 - chr2L_15_12715001 chr2L_12715001 RAL-843 490 chr2L 12731016 12731083 chr2L 12735833 12735900 F-element 16 4816 9.5 4.5 7.0 2.0 4884 chr2L 12731016 intron MRP + chr2L 12733458 intron MRP + chr2L 12735900 intron MRP + chr2L_16_12730001 chr2L_12730001 RAL-843 491 chr2L 12739133 12739196 chr2L 12743964 12744027 Doc 18 4830 11.0 12.5 11.8 1.4 4894 chr2L 12739133 exon MRP + chr2L 12741580 intron MRP + chr2L 12744027 exon MRP + chr2L_18_12740001 chr2L_12740001 RAL-843 492 chr2L 12748251 12748258 chr2L 12748375 12748375 4 123 19.5 4.5 12.0 0.3 124 chr2L 12748251 intergenic not near genes chr2L 12748313 intergenic not near genes chr2L 12748375 intergenic not near genes chr2L_4_12745001 chr2L_12745001 RAL-843 493 chr2L 12748268 12748324 chr2L 12748369 12748427 15 108 7.5 3.5 5.5 2.3 159 chr2L 12748268 intergenic not near genes chr2L 12748348 intergenic not near genes chr2L 12748427 intergenic not near genes chr2L_15_12745001 chr2L_12745001 RAL-843 494 chr2L 12751271 12751337 chr2L 12751399 12751470 27 127 7.5 6.0 6.8 3.5 199 chr2L 12751271 intergenic not near genes chr2L 12751370 intergenic not near genes chr2L 12751470 intergenic not near genes chr2L_27_12750001 chr2L_12750001 RAL-843 495 chr2L 12753926 12753992 chr2L 12754080 12754146 26 154 8.5 11.5 10.0 2.4 220 chr2L 12753926 intergenic not near genes chr2L 12754036 intergenic not near genes chr2L 12754146 intergenic not near genes chr2L_26_12750001 chr2L_12750001 RAL-843 496 chr2L 12763778 12763866 chr2L 12764040 12764128 BS 25 262 0.0 0.0 0.0 25.0 350 chr2L 12763778 intergenic not near genes chr2L 12763953 intergenic not near genes chr2L 12764128 intergenic not near genes chr2L_25_12760001 chr2L_12760001 RAL-843 497 chr2L 12766709 12766759 chr2L 12766837 12766882 22 128 12.0 2.0 7.0 2.8 173 chr2L 12766709 intergenic not near genes chr2L 12766796 intergenic not near genes chr2L 12766882 intergenic not near genes chr2L_22_12765001 chr2L_12765001 RAL-843 498 chr2L 12781761 12781814 chr2L 12789254 12789307 Quasimodo 20 7492 13.5 13.5 13.5 1.4 7546 chr2L 12781761 intergenic not near genes chr2L 12785534 intergenic not near genes chr2L 12789307 intergenic not near genes chr2L_20_12785001 chr2L_12785001 RAL-843 499 chr2L 12791569 12791606 chr2L 12795294 12795331 F-element 17 3725 8.5 11.5 10.0 1.5 3762 chr2L 12791569 intergenic not near genes chr2L 12793450 intergenic not near genes chr2L 12795331 intergenic not near genes chr2L_17_12790001 chr2L_12790001 RAL-843 500 chr2L 12791608 12791631 chr2L 12795288 12795289 F-element 9 3705 5.5 10.5 8.0 1.0 3681 chr2L 12791608 intergenic not near genes chr2L 12793448 intergenic not near genes chr2L 12795289 intergenic not near genes chr2L_9_12790001 chr2L_12790001 RAL-843 501 chr2L 12855584 12855657 chr2L 12856056 12856119 15 465 27.5 45.0 36.2 0.4 535 chr2L 12855584 intergenic not near genes chr2L 12855852 intergenic not near genes chr2L 12856119 intergenic not near genes chr2L_15_12855001 chr2L_12855001 RAL-843 502 chr2L 12861656 12861681 chr2L 12863173 12863198 hobo 8 1515 8.5 5.5 7.0 1.0 1542 chr2L 12861656 intergenic not near genes chr2L 12862427 intergenic not near genes chr2L 12863198 intergenic not near genes chr2L_8_12860001 chr2L_12860001 RAL-843 503 chr2L 12861685 12861723 chr2L 12863167 12863239 hobo 14 1513 2.5 5.5 4.0 2.8 1554 chr2L 12861685 intergenic not near genes chr2L 12862462 intergenic not near genes chr2L 12863239 intergenic not near genes chr2L_14_12860001 chr2L_12860001 RAL-843 504 chr2L 12893983 12894048 chr2L 12895500 12895535 hobo 19 1511 11.0 9.5 10.2 1.7 1552 chr2L 12893983 intergenic not near genes chr2L 12894759 intergenic not near genes chr2L 12895535 intergenic not near genes chr2L_19_12890001 chr2L_12890001 RAL-843 505 chr2L 12930461 12930498 chr2L 12930587 12930624 11 124 9.5 14.5 12.0 0.8 163 chr2L 12930461 intergenic not near genes chr2L 12930542 intergenic not near genes chr2L 12930624 intergenic not near genes chr2L_11_12930001 chr2L_12930001 RAL-843 506 chr2L 12933807 12933880 chr2L 12941324 12941385 blood 30 7514 8.0 10.5 9.2 2.9 7578 chr2L 12933807 intergenic not near genes chr2L 12937596 intergenic not near genes chr2L 12941385 intergenic not near genes chr2L_30_12935001 chr2L_12935001 RAL-843 507 chr2L 12944888 12944965 chr2L 12945087 12945163 18 198 3.5 0.5 2.0 6.0 275 chr2L 12944888 intergenic not near genes chr2L 12945026 intergenic not near genes chr2L 12945163 intergenic not near genes chr2L_18_12945001 chr2L_12945001 RAL-843 508 chr2L 12963747 12963823 chr2L 12963899 12963955 32 149 10.0 7.5 8.8 3.3 208 chr2L 12963747 intergenic not near genes chr2L 12963851 intergenic not near genes chr2L 12963955 intergenic not near genes chr2L_32_12960001 chr2L_12960001 RAL-843 509 chr2L 13036201 13036267 chr2L 13036493 13036559 X-element 32 291 7.0 7.5 7.2 3.9 358 chr2L 13036201 intron CG9932 - chr2L 13036380 intron CG9932 - chr2L 13036559 intron CG9932 - chr2L_32_13035001 chr2L_13035001 RAL-843 510 chr2L 13110956 13111006 chr2L 13111092 13111142 31 135 9.5 5.5 7.5 3.6 186 chr2L 13110956 intergenic not near genes chr2L 13111049 intergenic not near genes chr2L 13111142 intergenic not near genes chr2L_31_13110001 chr2L_13110001 RAL-843 511 chr2L 13215345 13215411 chr2L 13215670 13215736 25 324 6.0 8.0 7.0 3.1 391 chr2L 13215345 5` UTR kek4 - chr2L 13215540 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215736 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_25_13215001 chr2L_13215001 RAL-843 512 chr2L 13266336 13266408 chr2L 13266474 13266546 37 134 0.0 12.5 6.2 5.1 210 chr2L 13266336 intron CG44085 + chr2L 13266441 intron CG44085 + chr2L 13266546 intron CG44085 + chr2L_37_13265001 chr2L_13265001 RAL-843 513 chr2L 13405605 13405669 chr2L 13410452 13410516 Doc 30 4844 8.0 15.5 11.8 2.3 4911 chr2L 13405605 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410516 exon CG7110 + chr2L_30_13405001 chr2L_13405001 RAL-843 514 chr2L 13437298 13437351 chr2L 13437429 13437484 12 131 8.0 0.0 4.0 2.4 186 chr2L 13437298 intron,intron CG42784 +,Tehao + chr2L 13437391 intron,intron CG42784 +,Tehao + chr2L 13437484 intron,intron CG42784 +,Tehao + chr2L_12_13435001 chr2L_13435001 RAL-843 515 chr2L 13449437 13449486 chr2L 13456910 13456972 Quasimodo 15 7485 7.5 13.0 10.2 1.3 7535 chr2L 13449437 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453204 intron CG42784 + chr2L 13456972 intron CG42784 + chr2L_15_13450001 chr2L_13450001 RAL-843 516 chr2L 13463790 13463846 chr2L 13463928 13463985 22 134 6.5 0.5 3.5 4.9 195 chr2L 13463790 intron CG42784 + chr2L 13463888 intron CG42784 + chr2L 13463985 intron CG42784 + chr2L_22_13460001 chr2L_13460001 RAL-843 517 chr2L 13481413 13481465 chr2L 13482070 13482122 jockey 16 657 15.0 18.0 16.5 0.9 709 chr2L 13481413 intron CG42784 + chr2L 13481768 intron CG42784 + chr2L 13482122 intron CG42784 + chr2L_16_13480001 chr2L_13480001 RAL-843 518 chr2L 13522242 13522281 chr2L 13527598 13527637 Transpac 15 5353 1.5 16.0 8.8 1.5 5395 chr2L 13522242 intron B4 - chr2L 13524940 intron B4 - chr2L 13527637 intron B4 - chr2L_15_13520001 chr2L_13520001 RAL-843 519 chr2L 13522284 13522285 chr2L 13527592 13527622 Transpac 4 5335 1.5 14.5 8.0 0.4 5338 chr2L 13522284 intron B4 - chr2L 13524953 intron B4 - chr2L 13527622 intron B4 - chr2L_4_13520001 chr2L_13520001 RAL-843 520 chr2L 13560364 13560421 chr2L 13565233 13565290 F-element 16 4869 6.0 0.0 3.0 4.0 4926 chr2L 13560364 intron kuz + chr2L 13562827 intron kuz + chr2L 13565290 intron kuz + chr2L_16_13560001 chr2L_13560001 RAL-843 521 chr2L 13566948 13567021 chr2L 13567135 13567194 28 184 3.0 11.0 7.0 3.5 246 chr2L 13566948 intron kuz + chr2L 13567071 intron kuz + chr2L 13567194 intron kuz + chr2L_28_13565001 chr2L_13565001 RAL-843 522 chr2L 13570180 13570255 chr2L 13570343 13570418 27 161 5.5 8.0 6.8 3.5 238 chr2L 13570180 intron kuz + chr2L 13570299 intron kuz + chr2L 13570418 intron kuz + chr2L_27_13570001 chr2L_13570001 RAL-843 523 chr2L 13572869 13572897 chr2L 13573001 13573029 8 131 17.5 11.5 14.5 0.5 160 chr2L 13572869 intron kuz + chr2L 13572949 intron kuz + chr2L 13573029 intron kuz + chr2L_8_13570001 chr2L_13570001 RAL-843 524 chr2L 13572900 13572929 chr2L 13572991 13573061 14 127 5.0 11.0 8.0 1.6 161 chr2L 13572900 intron kuz + chr2L 13572980 intron kuz + chr2L 13573061 intron kuz + chr2L_14_13570001 chr2L_13570001 RAL-843 525 chr2L 13622095 13622169 chr2L 13622244 13622318 14 143 5.5 5.5 5.5 2.2 223 chr2L 13622095 intron kuz + chr2L 13622206 intron kuz + chr2L 13622318 intron kuz + chr2L_14_13620001 chr2L_13620001 RAL-843 526 chr2L 13677887 13677952 chr2L 13678047 13678112 20 159 5.5 5.0 5.2 3.2 225 chr2L 13677887 3` UTR CG31814 - chr2L 13678000 3` UTR CG31814 - chr2L 13678112 3` UTR CG31814 - chr2L_20_13675001 chr2L_13675001 RAL-843 527 chr2L 13684221 13684285 chr2L 13684347 13684411 19 126 5.0 6.0 5.5 2.9 190 chr2L 13684221 exon CG31814 - chr2L 13684316 intron CG31814 - chr2L 13684411 exon CG31814 - chr2L_19_13680001 chr2L_13680001 RAL-843 528 chr2L 13740033 13740087 chr2L 13740161 13740216 6 128 0.0 6.0 3.0 1.5 183 chr2L 13740033 intergenic not near genes chr2L 13740124 intergenic not near genes chr2L 13740216 intergenic not near genes chr2L_6_13740001 chr2L_13740001 RAL-843 529 chr2L 13754145 13754217 chr2L 13754274 13754347 20 127 2.5 8.5 5.5 3.1 202 chr2L 13754145 intron,intron CR44846 +,TM9SF4 + chr2L 13754246 intron,intron CR44846 +,TM9SF4 + chr2L 13754347 intron,intron CR44846 +,TM9SF4 + chr2L_20_13750001 chr2L_13750001 RAL-843 530 chr2L 13761768 13761805 chr2L 13762929 13762966 Doc 14 1160 16.5 8.0 12.2 1.1 1198 chr2L 13761768 intron TM9SF4 + chr2L 13762367 intron TM9SF4 + chr2L 13762966 intron TM9SF4 + chr2L_14_13760001 chr2L_13760001 RAL-843 531 chr2L 13761808 13761823 chr2L 13762927 13762984 Doc 8 1156 12.0 8.0 10.0 0.7 1176 chr2L 13761808 intron TM9SF4 + chr2L 13762396 intron TM9SF4 + chr2L 13762984 intron TM9SF4 + chr2L_8_13760001 chr2L_13760001 RAL-843 532 chr2L 13800134 13800201 chr2L 13800288 13800355 17 154 8.0 11.0 9.5 1.6 221 chr2L 13800134 intergenic Sec71 + chr2L 13800244 intergenic not near genes chr2L 13800355 intergenic not near genes chr2L_17_13800001 chr2L_13800001 RAL-843 533 chr2L 13802540 13802615 chr2L 13802674 13802745 27 134 8.0 8.5 8.2 2.9 205 chr2L 13802540 intergenic not near genes chr2L 13802642 intergenic not near genes chr2L 13802745 intergenic not near genes chr2L_27_13800001 chr2L_13800001 RAL-843 534 chr2L 13853057 13853107 chr2L 13862257 13862307 roo 21 9200 12.0 7.0 9.5 2.0 9250 chr2L 13853057 intron CenG1A + chr2L 13857682 intron CenG1A + chr2L 13862307 intron CenG1A + chr2L_21_13855001 chr2L_13855001 RAL-843 535 chr2L 13862284 13862350 chr2L 13862427 13862493 27 143 6.5 8.0 7.2 3.3 209 chr2L 13862284 intron CenG1A + chr2L 13862388 intron CenG1A + chr2L 13862493 intron CenG1A + chr2L_27_13860001 chr2L_13860001 RAL-843 536 chr2L 13913546 13913604 chr2L 13913709 13913767 30 162 15.0 13.5 14.2 2.0 221 chr2L 13913546 intergenic not near genes chr2L 13913656 intergenic not near genes chr2L 13913767 intergenic not near genes chr2L_30_13910001 chr2L_13910001 RAL-843 537 chr2L 13944359 13944430 chr2L 13944529 13944600 23 170 6.5 4.5 5.5 3.5 241 chr2L 13944359 intron Ance-3 + chr2L 13944480 intron Ance-3 + chr2L 13944600 intron Ance-3 + chr2L_23_13940001 chr2L_13940001 RAL-843 538 chr2L 13988232 13988301 chr2L 13988369 13988438 24 137 9.5 4.5 7.0 3.0 206 chr2L 13988232 intron rk - chr2L 13988335 intron rk - chr2L 13988438 intron rk - chr2L_24_13985001 chr2L_13985001 RAL-843 539 chr2L 14005137 14005212 chr2L 14005259 14005339 4 116 1.0 4.0 2.5 1.1 202 chr2L 14005137 intergenic not near genes chr2L 14005238 intergenic not near genes chr2L 14005339 intergenic not near genes chr2L_4_14005001 chr2L_14005001 RAL-843 540 chr2L 14057321 14057324 chr2L 14057450 14057453 4 129 8.0 7.5 7.8 0.5 132 chr2L 14057321 intron nAChRalpha5 + chr2L 14057387 intron nAChRalpha5 + chr2L 14057453 intron nAChRalpha5 + chr2L_4_14055001 chr2L_14055001 RAL-843 541 chr2L 14079116 14079134 chr2L 14079703 14079721 10 586 17.5 9.5 13.5 0.7 605 chr2L 14079116 intron nAChRalpha5 + chr2L 14079418 intron nAChRalpha5 + chr2L 14079721 intron nAChRalpha5 + chr2L_10_14075001 chr2L_14075001 RAL-843 542 chr2L 14079137 14079159 chr2L 14079702 14079746 15 585 11.5 9.5 10.5 1.3 609 chr2L 14079137 intron nAChRalpha5 + chr2L 14079442 intron nAChRalpha5 + chr2L 14079746 intron nAChRalpha5 + chr2L_15_14075001 chr2L_14075001 RAL-843 543 chr2L 14079160 14079186 chr2L 14079696 14079773 12 582 6.0 8.0 7.0 1.5 613 chr2L 14079160 intron nAChRalpha5 + chr2L 14079466 intron nAChRalpha5 + chr2L 14079773 intron nAChRalpha5 + chr2L_12_14075001 chr2L_14075001 RAL-843 544 chr2L 14222257 14222332 chr2L 14222394 14222459 34 134 8.0 13.5 10.8 2.9 202 chr2L 14222257 intron Dyrk2 - chr2L 14222358 intron Dyrk2 - chr2L 14222459 intron Dyrk2 - chr2L_34_14220001 chr2L_14220001 RAL-843 545 chr2L 14236200 14236204 chr2L 14236347 14236351 5 147 23.5 0.5 12.0 0.4 151 chr2L 14236200 5` UTR CR44728 + chr2L 14236276 5` UTR CR44728 + chr2L 14236351 intergenic CR44728 + chr2L_5_14235001 chr2L_14235001 RAL-843 546 chr2L 14236206 14236269 chr2L 14236341 14236416 22 145 7.0 0.5 3.8 4.6 210 chr2L 14236206 5` UTR CR44728 + chr2L 14236311 intergenic CR44728 + chr2L 14236416 intergenic CR44728 + chr2L_22_14235001 chr2L_14235001 RAL-843 547 chr2L 14374728 14374802 chr2L 14374869 14374943 23 141 5.0 12.5 8.8 2.3 215 chr2L 14374728 intergenic not near genes chr2L 14374836 intergenic not near genes chr2L 14374943 intergenic not near genes chr2L_23_14370001 chr2L_14370001 RAL-843 548 chr2L 14378603 14378680 chr2L 14378732 14378807 24 127 7.0 7.0 7.0 3.0 204 chr2L 14378603 3` UTR ppk - chr2L 14378705 3` UTR ppk - chr2L 14378807 3` UTR ppk - chr2L_24_14375001 chr2L_14375001 RAL-843 549 chr2L 14393836 14393867 chr2L 14394025 14394056 6 189 8.5 11.0 9.8 0.6 220 chr2L 14393836 intron elB - chr2L 14393946 intron elB - chr2L 14394056 intron elB - chr2L_6_14390001 chr2L_14390001 RAL-843 550 chr2L 14396156 14396212 chr2L 14398962 14399018 26 2806 44.0 36.5 40.2 0.6 2862 chr2L 14396156 intron elB - chr2L 14397587 intron elB - chr2L 14399018 intron elB - chr2L_26_14395001 chr2L_14395001 RAL-843 551 chr2L 14396037 14396097 chr2L 14399103 14399171 41 3062 65.5 57.5 61.5 0.7 3134 chr2L 14396037 intron elB - chr2L 14397604 intron elB - chr2L 14399171 intron elB - chr2L_41_14395001 chr2L_14395001 RAL-843 552 chr2L 14424121 14424189 chr2L 14424260 14424328 13 139 7.0 3.5 5.2 2.1 207 chr2L 14424121 intergenic Cpr35B - chr2L 14424224 intergenic Cpr35B - chr2L 14424328 3` UTR Cpr35B - chr2L_13_14420001 chr2L_14420001 RAL-843 553 chr2L 14429383 14429447 chr2L 14429514 14429578 22 131 8.5 8.5 8.5 2.3 195 chr2L 14429383 3` UTR CR44732 - chr2L 14429480 3` UTR CR44732 - chr2L 14429578 3` UTR CR44732 - chr2L_22_14425001 chr2L_14425001 RAL-843 554 chr2L 14462677 14462823 chr2L 14462814 14462954 8 137 0.0 0.0 0.0 8.0 277 chr2L 14462677 intergenic not near genes chr2L 14462816 intergenic not near genes chr2L 14462954 intergenic not near genes chr2L_8_14460001 chr2L_14460001 RAL-843 555 chr2L 14503384 14503434 chr2L 14503513 14503563 20 129 4.5 4.5 4.5 3.6 179 chr2L 14503384 intergenic not near genes chr2L 14503474 intergenic not near genes chr2L 14503563 intergenic not near genes chr2L_20_14500001 chr2L_14500001 RAL-843 556 chr2L 14524574 14524639 chr2L 14525122 14525187 19 546 6.0 8.0 7.0 2.4 613 chr2L 14524574 intron CG33648 + chr2L 14524880 intron CG33648 + chr2L 14525187 intron CG33648 + chr2L_19_14520001 chr2L_14520001 RAL-843 557 chr2L 14554122 14554196 chr2L 14554249 14554322 28 122 3.0 6.5 4.8 4.8 200 chr2L 14554122 intergenic not near genes chr2L 14554222 intergenic not near genes chr2L 14554322 intergenic not near genes chr2L_28_14550001 chr2L_14550001 RAL-843 558 chr2L 14555101 14555154 chr2L 14555230 14555283 24 129 11.5 11.5 11.5 1.9 182 chr2L 14555101 intergenic not near genes chr2L 14555192 intergenic not near genes chr2L 14555283 intergenic not near genes chr2L_24_14555001 chr2L_14555001 RAL-843 559 chr2L 14570673 14570721 chr2L 14570804 14570851 11 130 5.5 6.0 5.8 1.6 178 chr2L 14570673 intergenic not near genes chr2L 14570762 intergenic not near genes chr2L 14570851 intergenic not near genes chr2L_11_14570001 chr2L_14570001 RAL-843 560 chr2L 14588344 14588377 chr2L 14588548 14588581 11 204 2.0 15.0 8.5 1.2 237 chr2L 14588344 intergenic CG42680 - chr2L 14588462 intergenic CG42680 - chr2L 14588581 intergenic CG42680 - chr2L_11_14585001 chr2L_14585001 RAL-843 561 chr2L 14588380 14588408 chr2L 14588545 14588609 14 197 2.0 14.0 8.0 1.6 229 chr2L 14588380 intergenic CG42680 - chr2L 14588494 intergenic CG42680 - chr2L 14588609 intergenic CG42680 - chr2L_14_14585001 chr2L_14585001 RAL-843 562 chr2L 14588626 14588671 chr2L 14588967 14589012 8 341 7.0 5.0 6.0 1.1 386 chr2L 14588626 intergenic CG42680 - chr2L 14588819 intergenic not near genes chr2L 14589012 intergenic not near genes chr2L_8_14585001 chr2L_14585001 RAL-843 563 chr2L 14618868 14618888 chr2L 14619299 14619319 jockey 10 431 8.5 6.5 7.5 1.2 451 chr2L 14618868 intron,3` UTR,3` UTR osp -,Adh +,Adhr + chr2L 14619094 intron osp - chr2L 14619319 intron osp - chr2L_10_14615001 chr2L_14615001 RAL-843 564 chr2L 14642533 14642594 chr2L 14651746 14651807 roo 26 9213 10.5 12.0 11.2 2.1 9274 chr2L 14642533 intron osp - chr2L 14647170 intron osp - chr2L 14651807 intron osp - chr2L_26_14645001 chr2L_14645001 RAL-843 565 chr2L 14694210 14694286 chr2L 14694384 14694460 32 174 5.5 5.5 5.5 4.9 250 chr2L 14694210 intergenic not near genes chr2L 14694335 intergenic not near genes chr2L 14694460 intergenic not near genes chr2L_32_14690001 chr2L_14690001 RAL-843 566 chr2L 14721578 14721638 chr2L 14721692 14721737 27 119 7.5 8.5 8.0 3.0 159 chr2L 14721578 intergenic not near genes chr2L 14721658 intergenic not near genes chr2L 14721737 intergenic not near genes chr2L_27_14720001 chr2L_14720001 RAL-843 567 chr2L 14726538 14726565 chr2L 14726670 14726697 5 132 6.0 9.5 7.8 0.6 159 chr2L 14726538 intron CG42685 - chr2L 14726618 intron CG42685 - chr2L 14726697 intron CG42685 - chr2L_5_14725001 chr2L_14725001 RAL-843 568 chr2L 14761865 14761914 chr2L 14762014 14762063 16 149 8.5 6.0 7.2 2.0 198 chr2L 14761865 3` UTR CG4691 + chr2L 14761964 intergenic CR44858 +,CG4691 + chr2L 14762063 5` UTR CR44858 + chr2L_16_14760001 chr2L_14760001 RAL-843 569 chr2L 14771808 14771859 chr2L 14771940 14771968 10 130 0.0 9.5 4.8 1.7 160 chr2L 14771808 intergenic not near genes chr2L 14771888 intergenic not near genes chr2L 14771968 intergenic not near genes chr2L_10_14770001 chr2L_14770001 RAL-843 570 chr2L 14772659 14772739 chr2L 14772808 14772888 24 149 3.5 6.5 5.0 4.0 229 chr2L 14772659 intergenic not near genes chr2L 14772774 intergenic not near genes chr2L 14772888 intergenic not near genes chr2L_24_14770001 chr2L_14770001 RAL-843 571 chr2L 14778765 14778831 chr2L 14779103 14779169 19 335 17.0 5.5 11.2 1.6 404 chr2L 14778765 intergenic not near genes chr2L 14778967 intergenic not near genes chr2L 14779169 intergenic not near genes chr2L_19_14775001 chr2L_14775001 RAL-843 572 chr2L 14782446 14782455 chr2L 14782579 14782588 5 133 4.5 3.5 4.0 1.0 142 chr2L 14782446 intergenic not near genes chr2L 14782517 intergenic not near genes chr2L 14782588 intergenic not near genes chr2L_5_14780001 chr2L_14780001 RAL-843 573 chr2L 14803838 14803905 chr2L 14809091 14809158 copia 32 5248 6.5 11.5 9.0 3.2 5320 chr2L 14803838 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809158 intergenic not near genes chr2L_32_14805001 chr2L_14805001 RAL-843 574 chr2L 14839703 14839777 chr2L 14839829 14839903 21 126 9.5 12.0 10.8 1.8 200 chr2L 14839703 intergenic not near genes chr2L 14839803 intergenic not near genes chr2L 14839903 intergenic not near genes chr2L_21_14835001 chr2L_14835001 RAL-843 575 chr2L 14840929 14840998 chr2L 14841067 14841132 18 136 5.0 5.5 5.2 2.9 203 chr2L 14840929 3` UTR CR43805 - chr2L 14841030 3` UTR CR43805 - chr2L 14841132 3` UTR CR43805 - chr2L_18_14840001 chr2L_14840001 RAL-843 576 chr2L 14889907 14889927 chr2L 14890382 14890402 jockey 11 475 20.5 6.0 13.2 0.8 495 chr2L 14889907 intergenic not near genes chr2L 14890154 intergenic not near genes chr2L 14890402 intergenic not near genes chr2L_11_14890001 chr2L_14890001 RAL-843 577 chr2L 14889929 14889980 chr2L 14890378 14890455 jockey 24 473 8.0 4.5 6.2 3.3 526 chr2L 14889929 intergenic not near genes chr2L 14890192 intergenic not near genes chr2L 14890455 intergenic not near genes chr2L_24_14890001 chr2L_14890001 RAL-843 578 chr2L 14901487 14901541 chr2L 14901618 14901690 20 145 9.0 6.0 7.5 2.4 203 chr2L 14901487 intergenic not near genes chr2L 14901588 intergenic not near genes chr2L 14901690 intergenic not near genes chr2L_20_14900001 chr2L_14900001 RAL-843 579 chr2L 14919995 14920050 chr2L 14920124 14920179 23 128 6.5 3.0 4.8 4.0 184 chr2L 14919995 intron CG42313 - chr2L 14920087 intron CG42313 - chr2L 14920179 intron CG42313 - chr2L_23_14920001 chr2L_14920001 RAL-843 580 chr2L 14984327 14984402 chr2L 14991977 14992009 opus 13 7642 5.0 6.5 5.8 1.9 7682 chr2L 14984327 intron mol - chr2L 14988168 intron mol - chr2L 14992009 intron mol - chr2L_13_14985001 chr2L_14985001 RAL-843 581 chr2L 15013104 15013179 chr2L 15013258 15013338 21 153 2.5 6.0 4.2 4.0 234 chr2L 15013104 intergenic CR43856 - chr2L 15013221 intergenic not near genes chr2L 15013338 intergenic not near genes chr2L_21_15010001 chr2L_15010001 RAL-843 582 chr2L 15014585 15014651 chr2L 15014714 15014780 11 129 0.0 5.0 2.5 3.1 195 chr2L 15014585 intergenic not near genes chr2L 15014682 intergenic not near genes chr2L 15014780 intergenic not near genes chr2L_11_15010001 chr2L_15010001 RAL-843 583 chr2L 15021437 15021471 chr2L 15021530 15021597 4 111 11.0 8.0 9.5 0.4 160 chr2L 15021437 intron GABA-B-R1 + chr2L 15021517 intron GABA-B-R1 + chr2L 15021597 intron GABA-B-R1 + chr2L_4_15020001 chr2L_15020001 RAL-843 584 chr2L 15025977 15026052 chr2L 15026108 15026183 32 128 6.5 10.0 8.2 3.5 206 chr2L 15025977 exon GABA-B-R1 + chr2L 15026080 intron GABA-B-R1 + chr2L 15026183 exon GABA-B-R1 + chr2L_32_15025001 chr2L_15025001 RAL-843 585 chr2L 15099912 15099944 chr2L 15100049 15100092 9 147 9.0 0.0 4.5 1.6 180 chr2L 15099912 intergenic not near genes chr2L 15100002 intergenic not near genes chr2L 15100092 intergenic not near genes chr2L_9_15095001 chr2L_15095001 RAL-843 586 chr2L 15103820 15103862 chr2L 15103967 15104009 20 147 10.0 10.0 10.0 1.8 189 chr2L 15103820 intergenic not near genes chr2L 15103914 intergenic not near genes chr2L 15104009 intergenic not near genes chr2L_20_15100001 chr2L_15100001 RAL-843 587 chr2L 15122725 15122805 chr2L 15122855 15122936 14 130 1.0 2.5 1.8 5.0 211 chr2L 15122725 intergenic not near genes chr2L 15122830 intergenic not near genes chr2L 15122936 intergenic not near genes chr2L_14_15120001 chr2L_15120001 RAL-843 588 chr2L 15130967 15131043 chr2L 15131219 15131295 37 249 7.5 8.0 7.8 4.2 328 chr2L 15130967 intergenic not near genes chr2L 15131131 intergenic not near genes chr2L 15131295 intergenic not near genes chr2L_37_15130001 chr2L_15130001 RAL-843 589 chr2L 15161199 15161275 chr2L 15161385 15161461 20 182 3.5 7.0 5.2 3.2 262 chr2L 15161199 intergenic CR44770 + chr2L 15161330 intergenic CR44770 + chr2L 15161461 intergenic CR44770 +,CG4168 - chr2L_20_15160001 chr2L_15160001 RAL-843 590 chr2L 15197476 15197504 chr2L 15197622 15197650 INE-1 15 146 0.0 16.5 8.2 1.6 174 chr2L 15197476 intron CG4168 - chr2L 15197563 intron CG4168 - chr2L 15197650 intron CG4168 - chr2L_15_15195001 chr2L_15195001 RAL-843 591 chr2L 15227695 15227727 chr2L 15227785 15227825 15 112 7.0 4.0 5.5 2.3 130 chr2L 15227695 intergenic not near genes chr2L 15227760 intergenic not near genes chr2L 15227825 intergenic not near genes chr2L_15_15225001 chr2L_15225001 RAL-843 592 chr2L 15244021 15244065 chr2L 15244184 15244228 14 162 0.5 12.5 6.5 1.9 207 chr2L 15244021 intron ZnT35C - chr2L 15244124 intron ZnT35C - chr2L 15244228 intron ZnT35C - chr2L_14_15240001 chr2L_15240001 RAL-843 593 chr2L 15253793 15253853 chr2L 15253938 15253998 34 144 11.0 9.0 10.0 3.1 205 chr2L 15253793 3` UTR dao + chr2L 15253896 3` UTR dao + chr2L 15253998 3` UTR dao + chr2L_34_15250001 chr2L_15250001 RAL-843 594 chr2L 15303165 15303243 chr2L 15303379 15303457 47 214 8.0 11.5 9.8 4.4 292 chr2L 15303165 intergenic not near genes chr2L 15303311 intergenic not near genes chr2L 15303457 intergenic not near genes chr2L_47_15300001 chr2L_15300001 RAL-843 595 chr2L 15309315 15309376 chr2L 15309468 15309529 25 153 3.5 5.5 4.5 4.5 214 chr2L 15309315 intergenic not near genes chr2L 15309422 intergenic not near genes chr2L 15309529 intergenic not near genes chr2L_25_15305001 chr2L_15305001 RAL-843 596 chr2L 15318909 15318978 chr2L 15319035 15319105 11 126 4.0 4.5 4.2 2.1 196 chr2L 15318909 intergenic nht - chr2L 15319007 intergenic nht - chr2L 15319105 intergenic nht - chr2L_11_15315001 chr2L_15315001 RAL-843 597 chr2L 15332187 15332208 chr2L 15332598 15332609 6 409 5.0 2.5 3.8 1.2 422 chr2L 15332187 intergenic not near genes chr2L 15332398 intergenic not near genes chr2L 15332609 intergenic not near genes chr2L_6_15330001 chr2L_15330001 RAL-843 598 chr2L 15343496 15343567 chr2L 15343631 15343709 14 137 5.0 0.0 2.5 4.0 213 chr2L 15343496 intergenic not near genes chr2L 15343602 intergenic not near genes chr2L 15343709 intergenic not near genes chr2L_14_15340001 chr2L_15340001 RAL-843 599 chr2L 15446004 15446071 chr2L 15453523 15453590 blood 23 7517 5.0 1.0 3.0 5.8 7586 chr2L 15446004 intergenic not near genes chr2L 15449797 intergenic not near genes chr2L 15453590 intergenic not near genes chr2L_23_15445001 chr2L_15445001 RAL-843 600 chr2L 15458231 15458278 chr2L 15458369 15458400 17 137 3.0 4.5 3.8 3.5 169 chr2L 15458231 intergenic not near genes chr2L 15458316 intergenic not near genes chr2L 15458400 intergenic not near genes chr2L_17_15455001 chr2L_15455001 RAL-843 601 chr2L 15514278 15514327 chr2L 15514412 15514461 21 133 12.0 14.5 13.2 1.5 183 chr2L 15514278 intergenic not near genes chr2L 15514370 intergenic not near genes chr2L 15514461 intergenic not near genes chr2L_21_15510001 chr2L_15510001 RAL-843 602 chr2L 15556505 15556569 chr2L 15556659 15556723 15 154 4.5 5.5 5.0 2.5 218 chr2L 15556505 intron kek3 + chr2L 15556614 intron kek3 + chr2L 15556723 intron kek3 + chr2L_15_15555001 chr2L_15555001 RAL-843 603 chr2L 15559062 15559070 chr2L 15559466 15559474 4 402 17.5 8.5 13.0 0.3 412 chr2L 15559062 intron kek3 + chr2L 15559268 intron kek3 + chr2L 15559474 intron kek3 + chr2L_4_15555001 chr2L_15555001 RAL-843 604 chr2L 15559071 15559127 chr2L 15559455 15559531 38 396 6.5 6.5 6.5 5.1 460 chr2L 15559071 intron kek3 + chr2L 15559301 intron kek3 + chr2L 15559531 intron kek3 + chr2L_38_15555001 chr2L_15555001 RAL-843 605 chr2L 15567343 15567362 chr2L 15567479 15567498 7 136 8.5 7.5 8.0 0.8 155 chr2L 15567343 intron kek3 + chr2L 15567420 intron kek3 + chr2L 15567498 intron kek3 + chr2L_7_15565001 chr2L_15565001 RAL-843 606 chr2L 15586395 15586442 chr2L 15593498 15593545 297 19 7103 2.0 2.5 2.2 5.9 7150 chr2L 15586395 intergenic not near genes chr2L 15589970 intergenic not near genes chr2L 15593545 intergenic not near genes chr2L_19_15585001 chr2L_15585001 RAL-843 607 chr2L 15596787 15596821 chr2L 15596946 15596980 13 158 4.5 9.0 6.8 1.7 193 chr2L 15596787 intergenic not near genes chr2L 15596884 intergenic not near genes chr2L 15596980 intergenic not near genes chr2L_13_15595001 chr2L_15595001 RAL-843 608 chr2L 15609848 15609880 chr2L 15610189 15610221 10 341 7.5 8.0 7.8 1.1 373 chr2L 15609848 intergenic CG15255 -,CR44865 + chr2L 15610034 intergenic CG15255 -,CR44865 + chr2L 15610221 3` UTR,5` UTR CG15255 -,CR44865 + chr2L_10_15610001 chr2L_15610001 RAL-843 609 chr2L 15730842 15730886 chr2L 15730977 15731021 13 135 6.5 10.0 8.2 1.4 179 chr2L 15730842 intron CycE - chr2L 15730932 intron CycE - chr2L 15731021 intron CycE - chr2L_13_15730001 chr2L_15730001 RAL-843 610 chr2L 15751418 15751438 chr2L 15751545 15751565 6 127 7.5 9.0 8.2 0.7 147 chr2L 15751418 intergenic snRNA:U5:35D -,l(2)35Di - chr2L 15751492 intergenic snRNA:U5:35D -,l(2)35Di - chr2L 15751565 3` UTR snRNA:U5:35D - chr2L_6_15750001 chr2L_15750001 RAL-843 611 chr2L 15756971 15757025 chr2L 15757101 15757131 26 129 13.0 2.0 7.5 3.1 160 chr2L 15756971 intron Gli - chr2L 15757051 3` UTR Gli - chr2L 15757131 exon Gli - chr2L_26_15755001 chr2L_15755001 RAL-843 612 chr2L 15823306 15823372 chr2L 15823427 15823498 20 125 4.5 5.0 4.8 3.4 192 chr2L 15823306 intergenic CR44601 - chr2L 15823402 intergenic CR44601 - chr2L 15823498 intergenic not near genes chr2L_20_15820001 chr2L_15820001 RAL-843 613 chr2L 15826848 15826893 chr2L 15829292 15829337 Tabor 11 2444 6.5 9.5 8.0 1.2 2489 chr2L 15826848 intergenic not near genes chr2L 15828092 intergenic not near genes chr2L 15829337 intergenic not near genes chr2L_11_15825001 chr2L_15825001 RAL-843 614 chr2L 15934010 15934029 chr2L 15934155 15934174 7 145 11.0 0.0 5.5 1.1 164 chr2L 15934010 intron beat-Ib - chr2L 15934092 intron beat-Ib - chr2L 15934174 intron beat-Ib - chr2L_7_15930001 chr2L_15930001 RAL-843 615 chr2L 15950365 15950380 chr2L 15950493 15950508 9 128 7.0 2.0 4.5 1.6 143 chr2L 15950365 intron beat-Ib - chr2L 15950436 intron beat-Ib - chr2L 15950508 intron beat-Ib - chr2L_9_15950001 chr2L_15950001 RAL-843 616 chr2L 15955985 15956048 chr2L 15957502 15957564 hobo 31 1516 9.5 9.5 9.5 3.0 1579 chr2L 15955985 intron beat-Ib - chr2L 15956774 intron beat-Ib - chr2L 15957564 intron beat-Ib - chr2L_31_15955001 chr2L_15955001 RAL-843 617 chr2L 16001446 16001482 chr2L 16001584 16001620 7 137 2.0 9.5 5.8 1.0 174 chr2L 16001446 intron beat-Ic + chr2L 16001533 intron beat-Ic + chr2L 16001620 intron beat-Ic + chr2L_7_16000001 chr2L_16000001 RAL-843 618 chr2L 16059909 16059977 chr2L 16060057 16060125 23 146 5.5 5.5 5.5 3.5 216 chr2L 16059909 intron beat-Ia + chr2L 16060017 intron beat-Ia + chr2L 16060125 intron beat-Ia + chr2L_23_16060001 chr2L_16060001 RAL-843 619 chr2L 16068692 16068757 chr2L 16068821 16068886 29 128 5.0 4.5 4.8 5.0 194 chr2L 16068692 intron beat-Ia + chr2L 16068789 intron beat-Ia + chr2L 16068886 intron beat-Ia + chr2L_29_16065001 chr2L_16065001 RAL-843 620 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 32 145889 28.0 35.0 31.5 1.0 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_32_16140001 chr2L_16140001 RAL-843 621 chr2L 16115488 16115543 chr2L 16115609 16115669 15 126 5.5 8.0 6.8 1.9 181 chr2L 16115488 intergenic not near genes chr2L 16115578 intergenic not near genes chr2L 16115669 intergenic not near genes chr2L_15_16115001 chr2L_16115001 RAL-843 622 chr2L 16141096 16141187 chr2L 16146367 16146444 copia 19 5266 0.5 6.5 3.5 4.2 5348 chr2L 16141096 intergenic not near genes chr2L 16143770 intergenic not near genes chr2L 16146444 intergenic not near genes chr2L_19_16140001 chr2L_16140001 RAL-843 623 chr2L 16153692 16153747 chr2L 16160810 16160865 297 21 7117 8.5 5.5 7.0 2.6 7173 chr2L 16153692 intergenic not near genes chr2L 16157278 intergenic not near genes chr2L 16160865 intergenic not near genes chr2L_21_16155001 chr2L_16155001 RAL-843 624 chr2L 9084336 9084340 chr2L 16217660 16217660 6 7133322 31.5 35.0 33.2 0.2 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-843 625 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 37 145889 28.0 35.0 31.5 1.1 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_37_16140001 chr2L_16140001 RAL-843 626 chr2L 16226131 16226206 chr2L 16226268 16226343 27 137 8.0 6.5 7.2 3.3 212 chr2L 16226131 intergenic not near genes chr2L 16226237 intergenic not near genes chr2L 16226343 intergenic not near genes chr2L_27_16225001 chr2L_16225001 RAL-843 627 chr2L 16242027 16242055 chr2L 16242169 16242197 11 141 13.5 0.0 6.8 1.4 170 chr2L 16242027 5` UTR CG42818 + chr2L 16242112 exon CG42818 + chr2L 16242197 exon CG42818 + chr2L_11_16240001 chr2L_16240001 RAL-843 628 chr2L 16243653 16243856 chr2L 16243775 16244001 56 137 0.0 0.0 0.0 56.0 348 chr2L 16243653 exon CG42818 + chr2L 16243827 exon CG42818 + chr2L 16244001 exon CG42818 + chr2L_56_16240001 chr2L_16240001 RAL-843 629 chr2L 16254841 16254915 chr2L 16255150 16255224 20 309 5.5 8.5 7.0 2.5 383 chr2L 16254841 intron PRL-1 - chr2L 16255032 intron PRL-1 - chr2L 16255224 intron PRL-1 - chr2L_20_16255001 chr2L_16255001 RAL-843 630 chr2L 16280242 16280285 chr2L 16281433 16281477 1360 8 1200 8.5 7.5 8.0 0.9 1235 chr2L 16280242 intron crp - chr2L 16280860 intron crp - chr2L 16281477 intron crp - chr2L_8_16280001 chr2L_16280001 RAL-843 631 chr2L 16354725 16354783 chr2L 16354866 16354925 17 142 4.0 5.0 4.5 3.1 200 chr2L 16354725 intergenic CaBP1 -,CG4455 + chr2L 16354825 intergenic CaBP1 -,CG4455 + chr2L 16354925 3` UTR CaBP1 - chr2L_17_16350001 chr2L_16350001 RAL-843 632 chr2L 16363909 16363972 chr2L 16364189 16364264 34 295 0.0 4.0 2.0 11.3 355 chr2L 16363909 intergenic not near genes chr2L 16364086 intergenic not near genes chr2L 16364264 intergenic not near genes chr2L_34_16360001 chr2L_16360001 RAL-843 633 chr2L 16365444 16365464 chr2L 16365639 16365664 6 199 0.5 7.5 4.0 1.2 220 chr2L 16365444 intergenic jhamt + chr2L 16365554 intergenic jhamt + chr2L 16365664 intergenic jhamt + chr2L_6_16365001 chr2L_16365001 RAL-843 634 chr2L 16388851 16388922 chr2L 16388979 16389050 31 121 7.5 7.0 7.2 3.8 199 chr2L 16388851 intergenic not near genes chr2L 16388950 intergenic not near genes chr2L 16389050 intergenic not near genes chr2L_31_16385001 chr2L_16385001 RAL-843 635 chr2L 16389728 16389812 chr2L 16389862 16389946 9 134 5.5 0.0 2.8 2.4 218 chr2L 16389728 intergenic not near genes chr2L 16389837 intergenic not near genes chr2L 16389946 intergenic not near genes chr2L_9_16385001 chr2L_16385001 RAL-843 636 chr2L 16434060 16434130 chr2L 16434192 16434262 21 132 5.0 5.0 5.0 3.5 202 chr2L 16434060 intron CG5888 - chr2L 16434161 intron CG5888 - chr2L 16434262 intron CG5888 - chr2L_21_16430001 chr2L_16430001 RAL-843 637 chr2L 16458781 16458792 chr2L 16459027 16459038 7 246 10.5 5.0 7.8 0.8 257 chr2L 16458781 intergenic not near genes chr2L 16458910 intergenic not near genes chr2L 16459038 intergenic not near genes chr2L_7_16455001 chr2L_16455001 RAL-843 638 chr2L 16507890 16507967 chr2L 16508023 16508105 26 136 0.0 8.0 4.0 5.2 215 chr2L 16507890 intergenic CG5953 -,Tpr2 + chr2L 16507998 intergenic CG5953 -,Tpr2 + chr2L 16508105 3` UTR CG5953 - chr2L_26_16505001 chr2L_16505001 RAL-843 639 chr2L 16511936 16511986 chr2L 16519113 16519163 HMS-Beagle 20 7177 8.0 9.0 8.5 2.1 7227 chr2L 16511936 intron CG5953 - chr2L 16515550 intron CG5953 - chr2L 16519163 intron CG5953 - chr2L_20_16515001 chr2L_16515001 RAL-843 640 chr2L 16522026 16522100 chr2L 16522174 16522232 9 139 0.0 4.5 2.2 2.8 206 chr2L 16522026 intron CG5953 - chr2L 16522129 intron CG5953 - chr2L 16522232 intron CG5953 - chr2L_9_16520001 chr2L_16520001 RAL-843 641 chr2L 16537277 16537351 chr2L 16537403 16537477 30 125 12.5 15.0 13.8 2.0 200 chr2L 16537277 intergenic not near genes chr2L 16537377 intergenic not near genes chr2L 16537477 intergenic not near genes chr2L_30_16535001 chr2L_16535001 RAL-843 642 chr2L 16538842 16538908 chr2L 16538972 16539032 29 124 8.5 12.5 10.5 2.5 190 chr2L 16538842 intergenic not near genes chr2L 16538937 intergenic not near genes chr2L 16539032 intergenic not near genes chr2L_29_16535001 chr2L_16535001 RAL-843 643 chr2L 16477476 16477528 chr2L 16550943 16551005 HMS-Beagle 11 73468 29.0 42.5 35.8 0.3 73529 chr2L 16477476 intron dac - chr2L 16514240 intron CG5953 - chr2L 16551005 intron CG42389 + chr2L_11_16510001 chr2L_16510001 RAL-843 644 chr2L 16589794 16589828 chr2L 16589922 16589958 8 132 6.5 9.0 7.8 0.9 164 chr2L 16589794 intron CG42389 + chr2L 16589876 intron CG42389 + chr2L 16589958 intron CG42389 + chr2L_8_16585001 chr2L_16585001 RAL-843 645 chr2L 16617018 16617091 chr2L 16617230 16617277 20 209 4.5 12.0 8.2 2.2 259 chr2L 16617018 intron CG42389 + chr2L 16617148 intron CG42389 + chr2L 16617277 intron CG42389 + chr2L_20_16615001 chr2L_16615001 RAL-843 646 chr2L 16681368 16681448 chr2L 16681499 16681579 26 130 3.5 6.0 4.8 4.5 211 chr2L 16681368 intron,exon grp +,squ + chr2L 16681474 intron,3` UTR grp +,squ + chr2L 16681579 intron,3` UTR grp +,squ + chr2L_26_16680001 chr2L_16680001 RAL-843 647 chr2L 16694096 16694161 chr2L 16694227 16694274 25 125 10.0 13.0 11.5 2.0 178 chr2L 16694096 intron grp + chr2L 16694185 intron grp + chr2L 16694274 intron grp + chr2L_25_16690001 chr2L_16690001 RAL-843 648 chr2L 16695218 16695285 chr2L 16695352 16695419 18 134 9.5 5.0 7.2 2.2 201 chr2L 16695218 intron grp + chr2L 16695318 intron grp + chr2L 16695419 intron grp + chr2L_18_16695001 chr2L_16695001 RAL-843 649 chr2L 16697018 16697074 chr2L 16697261 16697316 23 242 8.0 4.0 6.0 3.3 298 chr2L 16697018 intron grp + chr2L 16697167 intron grp + chr2L 16697316 intron grp + chr2L_23_16695001 chr2L_16695001 RAL-843 650 chr2L 16764925 16764993 chr2L 16765055 16765118 22 130 5.5 8.5 7.0 2.8 193 chr2L 16764925 intergenic not near genes chr2L 16765022 intergenic not near genes chr2L 16765118 intergenic not near genes chr2L_22_16765001 chr2L_16765001 RAL-843 651 chr2L 16809625 16809655 chr2L 16809803 16809833 9 176 0.0 0.0 0.0 9.0 208 chr2L 16809625 intron,intron CG13280 -,CG13272 + chr2L 16809729 intron,intron CG13280 -,CG13272 + chr2L 16809833 intron,intron CG13280 -,CG13272 + chr2L_9_16805001 chr2L_16805001 RAL-843 652 chr2L 16852251 16852251 chr2L 16858273 16858280 6 6023 25.5 13.0 19.2 0.3 6029 chr2L 16852251 exon CG31810 - chr2L 16855266 intron CG31809 - chr2L 16858280 intron CG31809 - chr2L_6_16855001 chr2L_16855001 RAL-843 653 chr2L 16880815 16880834 chr2L 16880947 16880966 8 132 11.5 9.0 10.2 0.7 151 chr2L 16880815 intron,intron CG31743 +,CG34313 + chr2L 16880890 intron,intron CG31743 +,CG34313 + chr2L 16880966 intron,intron CG31743 +,CG34313 + chr2L_8_16880001 chr2L_16880001 RAL-843 654 chr2L 16927224 16927238 chr2L 16927355 16927363 4 128 10.0 5.5 7.8 0.5 139 chr2L 16927224 intergenic not near genes chr2L 16927294 intergenic not near genes chr2L 16927363 intergenic not near genes chr2L_4_16925001 chr2L_16925001 RAL-843 655 chr2L 16927243 16927292 chr2L 16927352 16927392 12 120 4.5 4.5 4.5 2.2 149 chr2L 16927243 intergenic not near genes chr2L 16927318 intergenic not near genes chr2L 16927392 intergenic not near genes chr2L_12_16925001 chr2L_16925001 RAL-843 656 chr2L 16958065 16958124 chr2L 16962903 16962962 Doc 21 4838 7.5 8.0 7.8 2.4 4897 chr2L 16958065 intergenic not near genes chr2L 16960514 intergenic not near genes chr2L 16962962 intergenic not near genes chr2L_21_16960001 chr2L_16960001 RAL-843 657 chr2L 16991433 16991483 chr2L 16991589 16991638 18 156 4.5 5.0 4.8 3.1 205 chr2L 16991433 intron beat-IIIb + chr2L 16991536 intron beat-IIIb + chr2L 16991638 intron beat-IIIb + chr2L_18_16990001 chr2L_16990001 RAL-843 658 chr2L 17050017 17050049 chr2L 17050110 17050147 11 116 5.0 3.5 4.2 2.1 130 chr2L 17050017 intergenic not near genes chr2L 17050082 intergenic not near genes chr2L 17050147 intergenic not near genes chr2L_11_17050001 chr2L_17050001 RAL-843 659 chr2L 17052367 17052441 chr2L 17052529 17052603 19 162 3.0 8.0 5.5 2.9 236 chr2L 17052367 intergenic not near genes chr2L 17052485 intergenic not near genes chr2L 17052603 intergenic not near genes chr2L_19_17050001 chr2L_17050001 RAL-843 660 chr2L 17054291 17054356 chr2L 17054553 17054602 10 260 15.5 21.0 18.2 0.5 311 chr2L 17054291 intergenic not near genes chr2L 17054446 intergenic not near genes chr2L 17054602 intergenic not near genes chr2L_10_17050001 chr2L_17050001 RAL-843 661 chr2L 17087344 17087399 chr2L 17087501 17087567 14 163 6.5 4.5 5.5 2.2 223 chr2L 17087344 intergenic CG12620 + chr2L 17087456 intergenic CG12620 + chr2L 17087567 intergenic CG12620 + chr2L_14_17085001 chr2L_17085001 RAL-843 662 chr2L 17144285 17144302 chr2L 17152003 17152020 opus 5 7718 8.0 5.0 6.5 0.7 7735 chr2L 17144285 intron,intron CG34106 +,beat-IIIa + chr2L 17148152 intron,intron CG34106 +,beat-IIIa + chr2L 17152020 intron,intron CG34106 +,beat-IIIa + chr2L_5_17145001 chr2L_17145001 RAL-843 663 chr2L 17167519 17167595 chr2L 17167810 17167859 pogo 18 289 3.5 7.5 5.5 2.8 340 chr2L 17167519 intron,intron CG34106 +,beat-IIIa + chr2L 17167689 intron,intron CG34106 +,beat-IIIa + chr2L 17167859 intron,intron CG34106 +,beat-IIIa + chr2L_18_17165001 chr2L_17165001 RAL-843 664 chr2L 17199118 17199190 chr2L 17200635 17200707 hobo 14 1516 7.0 3.5 5.2 2.3 1589 chr2L 17199118 intron beat-IIIc - chr2L 17199912 intron beat-IIIc - chr2L 17200707 intron beat-IIIc - chr2L_14_17195001 chr2L_17195001 RAL-843 665 chr2L 17221975 17222043 chr2L 17222102 17222170 10 127 6.5 9.0 7.8 1.1 195 chr2L 17221975 intron beat-IIIc - chr2L 17222072 intron beat-IIIc - chr2L 17222170 intron beat-IIIc - chr2L_10_17220001 chr2L_17220001 RAL-843 666 chr2L 17226058 17226114 chr2L 17226187 17226241 9 127 6.5 8.0 7.2 1.1 183 chr2L 17226058 intron beat-IIIc - chr2L 17226150 intron beat-IIIc - chr2L 17226241 intron beat-IIIc - chr2L_9_17225001 chr2L_17225001 RAL-843 667 chr2L 17273147 17273215 chr2L 17277980 17278048 F-element 21 4831 5.5 7.5 6.5 2.8 4901 chr2L 17273147 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278048 intergenic not near genes chr2L_21_17275001 chr2L_17275001 RAL-843 668 chr2L 17292314 17292393 chr2L 17292444 17292520 12 130 3.5 0.0 1.8 4.3 206 chr2L 17292314 intergenic CG6380 - chr2L 17292417 intergenic CG6380 - chr2L 17292520 intergenic CG6380 - chr2L_12_17290001 chr2L_17290001 RAL-843 669 chr2L 17327872 17327925 chr2L 17328008 17328061 25 131 10.5 10.5 10.5 2.2 189 chr2L 17327872 intergenic not near genes chr2L 17327966 intergenic not near genes chr2L 17328061 intergenic not near genes chr2L_25_17325001 chr2L_17325001 RAL-843 670 chr2L 17335492 17335523 chr2L 17336723 17336754 1360 9 1231 10.0 8.5 9.2 0.9 1262 chr2L 17335492 intergenic not near genes chr2L 17336123 intergenic not near genes chr2L 17336754 intergenic not near genes chr2L_9_17335001 chr2L_17335001 RAL-843 671 chr2L 17359976 17360050 chr2L 17360204 17360278 13 228 4.0 7.0 5.5 2.0 302 chr2L 17359976 intergenic not near genes chr2L 17360127 intergenic not near genes chr2L 17360278 intergenic not near genes chr2L_13_17360001 chr2L_17360001 RAL-843 672 chr2L 17379664 17379704 chr2L 17379799 17379839 17 135 7.5 9.0 8.2 1.8 175 chr2L 17379664 intron Lrch - chr2L 17379752 intron Lrch - chr2L 17379839 intron Lrch - chr2L_17_17375001 chr2L_17375001 RAL-843 673 chr2L 17397957 17398021 chr2L 17398087 17398161 15 138 0.0 6.0 3.0 3.8 204 chr2L 17397957 intron CLIP-190 + chr2L 17398059 intron CLIP-190 + chr2L 17398161 intron CLIP-190 + chr2L_15_17395001 chr2L_17395001 RAL-843 674 chr2L 17432014 17432045 chr2L 17432171 17432203 1360 15 158 0.0 13.0 6.5 2.0 189 chr2L 17432014 intron Dif - chr2L 17432108 intron Dif - chr2L 17432203 intron Dif - chr2L_15_17430001 chr2L_17430001 RAL-843 675 chr2L 17446545 17446618 chr2L 17448855 17448928 30 2310 9.0 6.0 7.5 3.5 2383 chr2L 17446545 intron dl - chr2L 17447736 intron dl - chr2L 17448928 intron dl - chr2L_30_17445001 chr2L_17445001 RAL-843 676 chr2L 17452188 17452257 chr2L 17452447 17452500 25 263 6.5 10.0 8.2 2.7 312 chr2L 17452188 intergenic not near genes chr2L 17452344 intergenic not near genes chr2L 17452500 intergenic CG5050 + chr2L_25_17450001 chr2L_17450001 RAL-843 677 chr2L 17517806 17517871 chr2L 17517939 17517990 27 132 10.5 0.0 5.2 4.4 184 chr2L 17517806 intron Dhc36C + chr2L 17517898 intron Dhc36C + chr2L 17517990 intron Dhc36C + chr2L_27_17515001 chr2L_17515001 RAL-843 678 chr2L 17551288 17551314 chr2L 17551432 17551458 14 144 5.0 0.0 2.5 4.0 170 chr2L 17551288 intergenic not near genes chr2L 17551373 intergenic not near genes chr2L 17551458 intergenic not near genes chr2L_14_17550001 chr2L_17550001 RAL-843 679 chr2L 17605025 17605056 chr2L 17605157 17605188 10 132 5.0 3.5 4.2 1.9 163 chr2L 17605025 intergenic not near genes chr2L 17605106 intergenic not near genes chr2L 17605188 intergenic not near genes chr2L_10_17605001 chr2L_17605001 RAL-843 680 chr2L 17607440 17607450 chr2L 17607588 17607598 5 148 17.5 0.0 8.8 0.5 158 chr2L 17607440 intergenic CR44412 - chr2L 17607519 intergenic CR44412 - chr2L 17607598 intergenic CR44412 - chr2L_5_17605001 chr2L_17605001 RAL-843 681 chr2L 17623627 17623692 chr2L 17623906 17623972 20 280 9.0 0.5 4.8 3.4 345 chr2L 17623627 intergenic not near genes chr2L 17623800 intergenic not near genes chr2L 17623972 intergenic not near genes chr2L_20_17620001 chr2L_17620001 RAL-843 682 chr2L 17662705 17662772 chr2L 17662833 17662900 16 124 5.0 5.0 5.0 2.7 195 chr2L 17662705 intron CadN - chr2L 17662802 intron CadN - chr2L 17662900 intron CadN - chr2L_16_17660001 chr2L_17660001 RAL-843 683 chr2L 17680941 17681020 chr2L 17681068 17681147 11 126 1.5 4.0 2.8 2.9 206 chr2L 17680941 intron CadN - chr2L 17681044 intron CadN - chr2L 17681147 intron CadN - chr2L_11_17680001 chr2L_17680001 RAL-843 684 chr2L 17687467 17687520 chr2L 17692262 17692315 F-element 23 4794 7.0 6.5 6.8 2.9 4848 chr2L 17687467 intron CadN - chr2L 17689891 intron CadN - chr2L 17692315 intron CadN - chr2L_23_17685001 chr2L_17685001 RAL-843 685 chr2L 17723743 17723800 chr2L 17723886 17723943 19 142 4.5 3.5 4.0 3.8 200 chr2L 17723743 intron CadN - chr2L 17723843 intron CadN - chr2L 17723943 intron CadN - chr2L_19_17720001 chr2L_17720001 RAL-843 686 chr2L 17727822 17727860 chr2L 17729338 17729377 hobo 12 1515 9.0 8.5 8.8 1.2 1555 chr2L 17727822 intron CadN - chr2L 17728600 intron CadN - chr2L 17729377 intron CadN - chr2L_12_17725001 chr2L_17725001 RAL-843 687 chr2L 17741105 17741137 chr2L 17741238 17741271 8 134 14.0 9.5 11.8 0.6 166 chr2L 17741105 intron CadN - chr2L 17741188 intron CadN - chr2L 17741271 intron CadN - chr2L_8_17740001 chr2L_17740001 RAL-843 688 chr2L 17741138 17741170 chr2L 17741236 17741298 7 128 9.5 9.0 9.2 0.7 160 chr2L 17741138 intron CadN - chr2L 17741218 intron CadN - chr2L 17741298 intron CadN - chr2L_7_17740001 chr2L_17740001 RAL-843 689 chr2L 17819876 17819942 chr2L 17825130 17825196 copia 12 5254 6.0 11.0 8.5 1.3 5320 chr2L 17819876 intron CadN2 - chr2L 17822536 intron CadN2 - chr2L 17825196 intron CadN2 - chr2L_12_17820001 chr2L_17820001 RAL-843 690 chr2L 17863565 17863641 chr2L 17863696 17863772 25 131 4.0 5.5 4.8 4.3 207 chr2L 17863565 intron CadN2 - chr2L 17863668 intron CadN2 - chr2L 17863772 intron CadN2 - chr2L_25_17860001 chr2L_17860001 RAL-843 691 chr2L 17879977 17880029 chr2L 17880114 17880166 24 134 5.5 13.0 9.2 2.4 189 chr2L 17879977 intergenic not near genes chr2L 17880072 intergenic not near genes chr2L 17880166 intergenic not near genes chr2L_24_17880001 chr2L_17880001 RAL-843 692 chr2L 17911920 17911983 chr2L 17914148 17914209 pogo 22 2225 11.5 10.5 11.0 1.8 2289 chr2L 17911920 intergenic not near genes chr2L 17913064 intergenic not near genes chr2L 17914209 intergenic CG43271 - chr2L_22_17910001 chr2L_17910001 RAL-843 693 chr2L 17925972 17926006 chr2L 17926208 17926242 6 236 4.5 5.5 5.0 1.0 270 chr2L 17925972 intergenic not near genes chr2L 17926107 intergenic not near genes chr2L 17926242 intergenic not near genes chr2L_6_17925001 chr2L_17925001 RAL-843 694 chr2L 17943853 17943888 chr2L 17944006 17944041 10 153 11.5 9.5 10.5 0.9 188 chr2L 17943853 intergenic not near genes chr2L 17943947 intergenic not near genes chr2L 17944041 intergenic not near genes chr2L_10_17940001 chr2L_17940001 RAL-843 695 chr2L 17943896 17943909 chr2L 17944003 17944062 6 145 9.0 8.0 8.5 0.6 166 chr2L 17943896 intergenic not near genes chr2L 17943979 intergenic not near genes chr2L 17944062 intergenic not near genes chr2L_6_17940001 chr2L_17940001 RAL-843 696 chr2L 17951906 17951971 chr2L 17953423 17953488 hobo 24 1517 1.0 7.5 4.2 4.6 1582 chr2L 17951906 intergenic CR44398 -,CR44397 - chr2L 17952697 intergenic not near genes chr2L 17953488 intergenic not near genes chr2L_24_17950001 chr2L_17950001 RAL-843 697 chr2L 18020699 18020767 chr2L 18020836 18020888 28 136 6.5 6.0 6.2 3.9 189 chr2L 18020699 intron rdo + chr2L 18020794 intron rdo + chr2L 18020888 intron rdo + chr2L_28_18020001 chr2L_18020001 RAL-843 698 chr2L 18026941 18026976 chr2L 18027331 18027366 16 389 13.5 1.5 7.5 1.9 425 chr2L 18026941 intron rdo + chr2L 18027154 intron rdo + chr2L 18027366 intron rdo + chr2L_16_18025001 chr2L_18025001 RAL-843 699 chr2L 18026980 18027009 chr2L 18027327 18027387 15 385 9.0 1.5 5.2 2.4 407 chr2L 18026980 5` UTR rdo + chr2L 18027184 intron rdo + chr2L 18027387 intron rdo + chr2L_15_18025001 chr2L_18025001 RAL-843 700 chr2L 18051831 18051840 chr2L 18061028 18061037 roo 6 9197 20.0 3.0 11.5 0.5 9206 chr2L 18051831 intron rdo + chr2L 18056434 intron rdo + chr2L 18061037 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-843 701 chr2L 18051841 18051866 chr2L 18061027 18061063 roo 11 9196 16.0 3.0 9.5 1.0 9222 chr2L 18051841 intron rdo + chr2L 18056452 intron rdo + chr2L 18061063 intron rdo + chr2L_11_18055001 chr2L_18055001 RAL-843 702 chr2L 18051867 18051899 chr2L 18061022 18061096 roo 17 9190 10.0 2.5 6.2 2.4 9229 chr2L 18051867 intron rdo + chr2L 18056482 intron rdo + chr2L 18061096 intron rdo + chr2L_17_18055001 chr2L_18055001 RAL-843 703 chr2L 18073381 18073449 chr2L 18073545 18073613 25 161 10.0 7.5 8.8 2.6 232 chr2L 18073381 intergenic not near genes chr2L 18073497 intergenic not near genes chr2L 18073613 intergenic not near genes chr2L_25_18070001 chr2L_18070001 RAL-843 704 chr2L 18111196 18111243 chr2L 18111337 18111349 12 136 14.5 9.5 12.0 0.9 153 chr2L 18111196 intergenic not near genes chr2L 18111272 intergenic not near genes chr2L 18111349 intergenic not near genes chr2L_12_18110001 chr2L_18110001 RAL-843 705 chr2L 18198993 18199057 chr2L 18199124 18199188 32 130 12.0 7.5 9.8 3.0 195 chr2L 18198993 intron CG42750 - chr2L 18199090 intron CG42750 - chr2L 18199188 intron CG42750 - chr2L_32_18195001 chr2L_18195001 RAL-843 706 chr2L 18235034 18235050 chr2L 18235203 18235205 9 172 22.5 16.0 19.2 0.4 171 chr2L 18235034 intron CG42750 - chr2L 18235120 intron CG42750 - chr2L 18235205 intron CG42750 - chr2L_9_18235001 chr2L_18235001 RAL-843 707 chr2L 18235051 18235087 chr2L 18235198 18235229 22 166 10.5 13.5 12.0 1.7 178 chr2L 18235051 intron CG42750 - chr2L 18235140 intron CG42750 - chr2L 18235229 intron CG42750 - chr2L_22_18235001 chr2L_18235001 RAL-843 708 chr2L 18250517 18250532 chr2L 18250679 18250694 8 162 12.5 7.0 9.8 0.7 177 chr2L 18250517 intron CG42750 - chr2L 18250606 intron CG42750 - chr2L 18250694 intron CG42750 - chr2L_8_18250001 chr2L_18250001 RAL-843 709 chr2L 18254770 18254834 chr2L 18254920 18254984 27 149 7.0 3.5 5.2 4.4 214 chr2L 18254770 intron CG42750 - chr2L 18254877 intron CG42750 - chr2L 18254984 intron CG42750 - chr2L_27_18250001 chr2L_18250001 RAL-843 710 chr2L 18264096 18264135 chr2L 18264234 18264273 13 138 16.0 0.0 8.0 1.4 177 chr2L 18264096 intron CG42750 - chr2L 18264184 intron CG42750 - chr2L 18264273 intron CG42750 - chr2L_13_18260001 chr2L_18260001 RAL-843 711 chr2L 18291481 18291563 chr2L 18291629 18291725 16 150 3.0 0.0 1.5 6.4 244 chr2L 18291481 intergenic CG43362 -,CR44693 +,CR44696 - chr2L 18291603 intergenic CR44693 +,CG43362 -,CR44696 - chr2L 18291725 5` UTR CR44693 + chr2L_16_18290001 chr2L_18290001 RAL-843 712 chr2L 18299334 18299362 chr2L 18299591 18299619 6 257 16.5 5.5 11.0 0.5 285 chr2L 18299334 intergenic not near genes chr2L 18299476 intergenic not near genes chr2L 18299619 intergenic not near genes chr2L_6_18295001 chr2L_18295001 RAL-843 713 chr2L 18366116 18366179 chr2L 18366242 18366305 5 122 7.5 6.0 6.8 0.6 189 chr2L 18366116 intron Fas3 + chr2L 18366210 intron Fas3 + chr2L 18366305 intron Fas3 + chr2L_5_18365001 chr2L_18365001 RAL-843 714 chr2L 18407992 18408048 chr2L 18412826 18412890 Doc 13 4837 5.5 0.0 2.8 3.4 4898 chr2L 18407992 intergenic not near genes chr2L 18410441 intergenic not near genes chr2L 18412890 intergenic not near genes chr2L_13_18410001 chr2L_18410001 RAL-843 715 chr2L 18440272 18440354 chr2L 18440428 18440510 32 156 3.5 6.5 5.0 5.3 238 chr2L 18440272 intergenic not near genes chr2L 18440391 intergenic not near genes chr2L 18440510 intergenic not near genes chr2L_32_18440001 chr2L_18440001 RAL-843 716 chr2L 18443815 18443878 chr2L 18443945 18444008 14 130 4.5 1.5 3.0 3.5 193 chr2L 18443815 intergenic not near genes chr2L 18443912 intergenic not near genes chr2L 18444008 intergenic ncm - chr2L_14_18440001 chr2L_18440001 RAL-843 717 chr2L 18546174 18546203 chr2L 18546310 18546339 15 135 13.5 6.5 10.0 1.4 165 chr2L 18546174 intron Pde11 - chr2L 18546256 intron Pde11 - chr2L 18546339 intron Pde11 - chr2L_15_18545001 chr2L_18545001 RAL-843 718 chr2L 18546205 18546250 chr2L 18546341 18546386 23 135 8.0 15.5 11.8 1.8 181 chr2L 18546205 intron Pde11 - chr2L 18546296 intron Pde11 - chr2L 18546386 intron Pde11 - chr2L_23_18545001 chr2L_18545001 RAL-843 719 chr2L 18572128 18572148 chr2L 18572261 18572275 4 131 13.0 3.5 8.2 0.4 147 chr2L 18572128 intron Pde11 - chr2L 18572202 intron Pde11 - chr2L 18572275 intron Pde11 - chr2L_4_18570001 chr2L_18570001 RAL-843 720 chr2L 18572157 18572200 chr2L 18572254 18572286 22 109 5.5 3.5 4.5 4.0 129 chr2L 18572157 intron Pde11 - chr2L 18572222 intron Pde11 - chr2L 18572286 intron Pde11 - chr2L_22_18570001 chr2L_18570001 RAL-843 721 chr2L 18628045 18628053 chr2L 18628289 18628304 5 248 18.0 12.0 15.0 0.3 259 chr2L 18628045 intron MESR3 + chr2L 18628174 intron MESR3 + chr2L 18628304 intron MESR3 + chr2L_5_18625001 chr2L_18625001 RAL-843 722 chr2L 18628059 18628111 chr2L 18628285 18628362 20 242 4.5 9.5 7.0 2.5 303 chr2L 18628059 intron MESR3 + chr2L 18628210 intron MESR3 + chr2L 18628362 intron MESR3 + chr2L_20_18625001 chr2L_18625001 RAL-843 723 chr2L 18793282 18793348 chr2L 18793452 18793518 22 160 5.0 9.5 7.2 2.7 236 chr2L 18793282 intergenic ham - chr2L 18793400 intergenic ham - chr2L 18793518 intergenic not near genes chr2L_22_18790001 chr2L_18790001 RAL-843 724 chr2L 18808362 18808435 chr2L 18808491 18808564 21 124 9.5 7.5 8.5 2.2 202 chr2L 18808362 intergenic CG10570 -,CG42502 - chr2L 18808463 intergenic CG10570 -,CG42502 - chr2L 18808564 intergenic CG10570 -,CG42502 - chr2L_21_18805001 chr2L_18805001 RAL-843 725 chr2L 18842500 18842576 chr2L 18842651 18842690 34 144 6.0 9.0 7.5 4.0 190 chr2L 18842500 exon CG33120 - chr2L 18842595 exon CG33120 - chr2L 18842690 exon CG33120 - chr2L_34_18840001 chr2L_18840001 RAL-843 726 chr2L 18898363 18898399 chr2L 18898480 18898531 23 126 8.5 0.5 4.5 4.2 168 chr2L 18898363 intergenic not near genes chr2L 18898447 intergenic not near genes chr2L 18898531 intergenic not near genes chr2L_23_18895001 chr2L_18895001 RAL-843 727 chr2L 18902575 18902650 chr2L 18902906 18902981 13 331 6.0 4.0 5.0 2.2 406 chr2L 18902575 intergenic not near genes chr2L 18902778 intergenic not near genes chr2L 18902981 intergenic not near genes chr2L_13_18900001 chr2L_18900001 RAL-843 728 chr2L 18926531 18926592 chr2L 18926687 18926749 20 156 2.5 7.5 5.0 3.3 218 chr2L 18926531 intron ssp3 - chr2L 18926640 intron ssp3 - chr2L 18926749 intron ssp3 - chr2L_20_18925001 chr2L_18925001 RAL-843 729 chr2L 18943111 18943178 chr2L 18943246 18943313 32 135 5.5 6.0 5.8 4.7 202 chr2L 18943111 intron ssp3 - chr2L 18943212 intron ssp3 - chr2L 18943313 exon ssp3 - chr2L_32_18940001 chr2L_18940001 RAL-843 730 chr2L 18955256 18955263 chr2L 18955429 18955436 5 173 0.0 11.0 5.5 0.8 180 chr2L 18955256 intergenic CG10623 -,CR44741 + chr2L 18955346 intergenic CG10623 -,CR44741 + chr2L 18955436 intergenic CG10623 -,CR44741 + chr2L_5_18955001 chr2L_18955001 RAL-843 731 chr2L 18962182 18962257 chr2L 18962327 18962402 11 145 0.0 11.0 5.5 1.7 220 chr2L 18962182 intron Nak - chr2L 18962292 intron Nak - chr2L 18962402 intron Nak - chr2L_11_18960001 chr2L_18960001 RAL-843 732 chr2L 18981705 18981778 chr2L 18981832 18981904 26 125 8.0 6.5 7.2 3.2 199 chr2L 18981705 intron Swip-1 - chr2L 18981804 intron Swip-1 - chr2L 18981904 intron Swip-1 - chr2L_26_18980001 chr2L_18980001 RAL-843 733 chr2L 19121526 19121559 chr2L 19121637 19121674 18 117 7.0 12.5 9.8 1.7 148 chr2L 19121526 3` UTR l(2)37Cc - chr2L 19121600 3` UTR l(2)37Cc - chr2L 19121674 3` UTR l(2)37Cc - chr2L_18_19120001 chr2L_19120001 RAL-843 734 chr2L 19147330 19147352 chr2L 19154415 19154437 297 9 7082 10.5 13.5 12.0 0.7 7107 chr2L 19147330 intron brat + chr2L 19150884 intron brat + chr2L 19154437 intron brat + chr2L_9_19150001 chr2L_19150001 RAL-843 735 chr2L 19147354 19147392 chr2L 19154409 19154477 297 21 7081 3.5 13.0 8.2 2.3 7123 chr2L 19147354 intron brat + chr2L 19150916 intron brat + chr2L 19154477 intron brat + chr2L_21_19150001 chr2L_19150001 RAL-843 736 chr2L 19328385 19328441 chr2L 19328507 19328560 20 126 7.0 7.5 7.2 2.4 175 chr2L 19328385 intergenic CR45258 + chr2L 19328472 intergenic not near genes chr2L 19328560 intergenic not near genes chr2L_20_19325001 chr2L_19325001 RAL-843 737 chr2L 19344978 19345042 chr2L 19357231 19357261 blood 19 12254 11.5 7.5 9.5 1.8 12283 chr2L 19344978 intron dnt - chr2L 19351120 intron dnt - chr2L 19357261 intron dnt - chr2L_19_19350001 chr2L_19350001 RAL-843 738 chr2L 19357498 19357568 chr2L 19357638 19357708 34 139 13.0 12.0 12.5 2.5 210 chr2L 19357498 intron dnt - chr2L 19357603 intron dnt - chr2L 19357708 intron dnt - chr2L_34_19355001 chr2L_19355001 RAL-843 739 chr2L 19359136 19359147 chr2L 19359279 19359288 8 142 25.0 5.5 15.2 0.5 152 chr2L 19359136 intron dnt - chr2L 19359212 intron dnt - chr2L 19359288 intron dnt - chr2L_8_19355001 chr2L_19355001 RAL-843 740 chr2L 19359151 19359210 chr2L 19359269 19359353 27 141 9.0 3.5 6.2 3.8 202 chr2L 19359151 intron dnt - chr2L 19359252 intron dnt - chr2L 19359353 intron dnt - chr2L_27_19355001 chr2L_19355001 RAL-843 741 chr2L 19376778 19376837 chr2L 19376904 19376953 12 118 8.5 4.5 6.5 1.6 175 chr2L 19376778 intergenic not near genes chr2L 19376866 intergenic not near genes chr2L 19376953 intergenic not near genes chr2L_12_19375001 chr2L_19375001 RAL-843 742 chr2L 19382601 19382642 chr2L 19382703 19382714 13 102 12.5 16.5 14.5 0.8 113 chr2L 19382601 exon CG17350 + chr2L 19382658 exon CG17350 + chr2L 19382714 exon CG17350 + chr2L_13_19380001 chr2L_19380001 RAL-843 743 chr2L 19405575 19405639 chr2L 19405715 19405779 20 140 5.5 1.5 3.5 4.4 204 chr2L 19405575 intron Pax - chr2L 19405677 intron Pax - chr2L 19405779 intron Pax - chr2L_20_19405001 chr2L_19405001 RAL-843 744 chr2L 19407666 19407739 chr2L 19407913 19407986 42 247 6.5 9.0 7.8 4.8 320 chr2L 19407666 intron Pax - chr2L 19407826 intron Pax - chr2L 19407986 intron Pax - chr2L_42_19405001 chr2L_19405001 RAL-843 745 chr2L 19441024 19441087 chr2L 19441145 19441214 28 127 15.5 11.0 13.2 2.0 190 chr2L 19441024 intron CG10237 - chr2L 19441119 intron CG10237 - chr2L 19441214 5` UTR CG10237 - chr2L_28_19440001 chr2L_19440001 RAL-843 746 chr2L 19559957 19560038 chr2L 19560260 19560340 33 302 8.5 12.5 10.5 2.9 383 chr2L 19559957 exon Tep5 + chr2L 19560148 exon Tep5 + chr2L 19560340 intron Tep5 + chr2L_33_19560001 chr2L_19560001 RAL-843 747 chr2L 19560798 19560864 chr2L 19560928 19561009 25 137 10.0 0.0 5.0 4.2 211 chr2L 19560798 exon Tep5 + chr2L 19560904 exon Tep5 + chr2L 19561009 exon Tep5 + chr2L_25_19560001 chr2L_19560001 RAL-843 748 chr2L 19601523 19601599 chr2L 19601649 19601726 30 124 5.0 10.5 7.8 3.4 203 chr2L 19601523 intron,intron Lar +,CR44978 - chr2L 19601624 intron,intron Lar +,CR44978 - chr2L 19601726 intron,intron Lar +,CR44978 - chr2L_30_19600001 chr2L_19600001 RAL-843 749 chr2L 19620057 19620127 chr2L 19621096 19621141 jockey 25 1033 12.0 8.0 10.0 2.3 1084 chr2L 19620057 intron Lar + chr2L 19620599 intron Lar + chr2L 19621141 intron Lar + chr2L_25_19620001 chr2L_19620001 RAL-843 750 chr2L 19652530 19652595 chr2L 19674016 19674078 opus 22 21484 5.0 9.5 7.2 2.7 21548 chr2L 19652530 intron Lar + chr2L 19663304 intron Lar + chr2L 19674078 intron Lar + chr2L_22_19660001 chr2L_19660001 RAL-843 751 chr2L 19703500 19703561 chr2L 19712686 19712747 roo 39 9186 12.0 14.5 13.2 2.7 9247 chr2L 19703500 intron Lar + chr2L 19708124 intron Lar + chr2L 19712747 intron Lar + chr2L_39_19705001 chr2L_19705001 RAL-843 752 chr2L 19718484 19718505 chr2L 19718622 19718628 13 135 16.5 17.0 16.8 0.7 144 chr2L 19718484 intron Lar + chr2L 19718556 intron Lar + chr2L 19718628 intron Lar + chr2L_13_19715001 chr2L_19715001 RAL-843 753 chr2L 19737316 19737339 chr2L 19740835 19740844 1360 9 3513 18.5 7.5 13.0 0.6 3528 chr2L 19737316 intergenic Nf-YB + chr2L 19739080 intergenic not near genes chr2L 19740844 intergenic not near genes chr2L_9_19735001 chr2L_19735001 RAL-843 754 chr2L 19737354 19737372 chr2L 19740833 19740891 1360 8 3506 10.5 6.5 8.5 0.8 3537 chr2L 19737354 intergenic Nf-YB + chr2L 19739122 intergenic not near genes chr2L 19740891 intergenic not near genes chr2L_8_19735001 chr2L_19735001 RAL-843 755 chr2L 19737375 19737387 chr2L 19740821 19740858 1360 7 3482 7.5 5.0 6.2 1.0 3483 chr2L 19737375 intergenic Nf-YB + chr2L 19739116 intergenic not near genes chr2L 19740858 intergenic not near genes chr2L_7_19735001 chr2L_19735001 RAL-843 756 chr2L 19762761 19762819 chr2L 19763053 19763111 pogo 10 288 13.0 9.5 11.2 0.8 350 chr2L 19762761 exon fbp - chr2L 19762936 intron fbp - chr2L 19763111 intron fbp - chr2L_10_19760001 chr2L_19760001 RAL-843 757 chr2L 19762820 19762833 chr2L 19763052 19763125 pogo 8 284 7.5 9.5 8.5 0.8 305 chr2L 19762820 intron fbp - chr2L 19762972 intron fbp - chr2L 19763125 intron fbp - chr2L_8_19760001 chr2L_19760001 RAL-843 758 chr2L 19773118 19773191 chr2L 19773255 19773327 20 136 6.5 5.5 6.0 2.9 209 chr2L 19773118 intergenic not near genes chr2L 19773222 intergenic not near genes chr2L 19773327 intergenic not near genes chr2L_20_19770001 chr2L_19770001 RAL-843 759 chr2L 19776617 19776659 chr2L 19776747 19776789 18 130 17.0 9.5 13.2 1.3 172 chr2L 19776617 3` UTR CdGAPr - chr2L 19776703 3` UTR CdGAPr - chr2L 19776789 3` UTR CdGAPr - chr2L_18_19775001 chr2L_19775001 RAL-843 760 chr2L 19823219 19823297 chr2L 19823350 19823436 14 138 4.5 1.5 3.0 3.5 217 chr2L 19823219 intron sick + chr2L 19823328 intron sick + chr2L 19823436 intron sick + chr2L_14_19820001 chr2L_19820001 RAL-843 761 chr2L 19834939 19835004 chr2L 19835062 19835102 31 128 11.0 8.0 9.5 3.0 163 chr2L 19834939 intron sick + chr2L 19835020 intron sick + chr2L 19835102 intron sick + chr2L_31_19835001 chr2L_19835001 RAL-843 762 chr2L 19913026 19913063 chr2L 19913522 19913559 14 495 10.0 0.0 5.0 2.3 533 chr2L 19913026 intron,3` UTR sick +,Victoria - chr2L 19913292 intron,exon sick +,Victoria - chr2L 19913559 intron sick + chr2L_14_19910001 chr2L_19910001 RAL-843 763 chr2L 19941462 19941524 chr2L 19941600 19941663 27 138 6.0 4.5 5.2 4.4 201 chr2L 19941462 intron sick + chr2L 19941562 intron sick + chr2L 19941663 intron sick + chr2L_27_19940001 chr2L_19940001 RAL-843 764 chr2L 19947647 19947674 chr2L 19947768 19947807 5 131 4.5 4.0 4.2 1.0 160 chr2L 19947647 intron sick + chr2L 19947727 intron sick + chr2L 19947807 intron sick + chr2L_5_19945001 chr2L_19945001 RAL-843 765 chr2L 19994605 19994651 chr2L 19994735 19994776 12 121 15.5 7.0 11.2 1.0 171 chr2L 19994605 intron CG43861 - chr2L 19994690 intron CG43861 - chr2L 19994776 intron CG43861 - chr2L_12_19990001 chr2L_19990001 RAL-843 766 chr2L 19994652 19994678 chr2L 19994731 19994785 9 115 8.5 8.0 8.2 1.0 133 chr2L 19994652 intron CG43861 - chr2L 19994718 intron CG43861 - chr2L 19994785 intron CG43861 - chr2L_9_19990001 chr2L_19990001 RAL-843 767 chr2L 20005832 20005893 chr2L 20010958 20011019 flea 21 5126 7.0 11.5 9.2 2.1 5187 chr2L 20005832 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20011019 intron CG43861 - chr2L_21_20005001 chr2L_20005001 RAL-843 768 chr2L 20015901 20015971 chr2L 20016074 20016144 29 172 9.5 7.5 8.5 3.1 243 chr2L 20015901 intron CG43861 - chr2L 20016022 intron CG43861 - chr2L 20016144 intron CG43861 - chr2L_29_20015001 chr2L_20015001 RAL-843 769 chr2L 20041382 20041414 chr2L 20041516 20041543 18 133 21.0 10.0 15.5 1.1 161 chr2L 20041382 intron sNPF + chr2L 20041462 intron sNPF + chr2L 20041543 intron sNPF + chr2L_18_20040001 chr2L_20040001 RAL-843 770 chr2L 20041421 20041435 chr2L 20041556 20041561 8 133 14.0 22.0 18.0 0.4 140 chr2L 20041421 intron sNPF + chr2L 20041491 intron sNPF + chr2L 20041561 intron sNPF + chr2L_8_20040001 chr2L_20040001 RAL-843 771 chr2L 20041436 20041457 chr2L 20041538 20041592 12 128 5.0 16.5 10.8 1.0 156 chr2L 20041436 intron sNPF + chr2L 20041514 intron sNPF + chr2L 20041592 intron sNPF + chr2L_12_20040001 chr2L_20040001 RAL-843 772 chr2L 20057001 20057073 chr2L 20057127 20057200 25 126 6.0 6.0 6.0 3.6 199 chr2L 20057001 intergenic not near genes chr2L 20057100 intergenic not near genes chr2L 20057200 intergenic not near genes chr2L_25_20055001 chr2L_20055001 RAL-843 773 chr2L 20122591 20122646 chr2L 20122731 20122787 18 141 8.5 6.5 7.5 2.1 196 chr2L 20122591 intergenic not near genes chr2L 20122689 intergenic not near genes chr2L 20122787 intergenic not near genes chr2L_18_20120001 chr2L_20120001 RAL-843 774 chr2L 20272074 20272137 chr2L 20282835 20282896 copia 33 10760 10.0 12.5 11.2 2.7 10822 chr2L 20272074 intergenic not near genes chr2L 20277485 intergenic not near genes chr2L 20282896 intergenic not near genes chr2L_33_20275001 chr2L_20275001 RAL-843 775 chr2L 20294256 20294322 chr2L 20294395 20294461 24 138 7.0 8.0 7.5 2.8 205 chr2L 20294256 intergenic CG12617 + chr2L 20294358 intergenic CG12617 + chr2L 20294461 intergenic CG12617 + chr2L_24_20290001 chr2L_20290001 RAL-843 776 chr2L 20303159 20303182 chr2L 20310677 20310700 blood 9 7518 0.0 14.0 7.0 1.1 7541 chr2L 20303159 intergenic not near genes chr2L 20306930 intergenic not near genes chr2L 20310700 intergenic not near genes chr2L_9_20305001 chr2L_20305001 RAL-843 777 chr2L 20310832 20310835 chr2L 20310961 20310963 4 129 21.5 4.0 12.8 0.3 131 chr2L 20310832 intergenic spir + chr2L 20310898 intergenic spir + chr2L 20310963 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-843 778 chr2L 20310838 20310915 chr2L 20310960 20311014 13 126 8.0 4.5 6.2 1.8 176 chr2L 20310838 intergenic spir + chr2L 20310926 intergenic spir + chr2L 20311014 intergenic spir + chr2L_13_20310001 chr2L_20310001 RAL-843 779 chr2L 20319990 20320066 chr2L 20320144 20320235 29 166 10.0 0.0 5.0 4.8 245 chr2L 20319990 intron spir + chr2L 20320112 intron spir + chr2L 20320235 intron spir + chr2L_29_20320001 chr2L_20320001 RAL-843 780 chr2L 20372199 20372239 chr2L 20372490 20372530 pogo 23 291 5.0 11.0 8.0 2.6 331 chr2L 20372199 intergenic Ugt37a1 - chr2L 20372364 intergenic Ugt37a1 - chr2L 20372530 exon Ugt37a1 - chr2L_23_20370001 chr2L_20370001 RAL-843 781 chr2L 20484186 20484202 chr2L 20484309 20484330 4 127 18.5 14.0 16.2 0.2 144 chr2L 20484186 intron CR44980 - chr2L 20484258 intron CR44980 - chr2L 20484330 intron CR44980 - chr2L_4_20480001 chr2L_20480001 RAL-843 782 chr2L 20484204 20484209 chr2L 20484307 20484318 4 114 16.5 12.5 14.5 0.3 114 chr2L 20484204 intron CR44980 - chr2L 20484261 intron CR44980 - chr2L 20484318 intron CR44980 - chr2L_4_20480001 chr2L_20480001 RAL-843 783 chr2L 20498641 20498708 chr2L 20498790 20498857 32 149 6.5 12.0 9.2 3.1 216 chr2L 20498641 intergenic not near genes chr2L 20498749 intergenic not near genes chr2L 20498857 intergenic not near genes chr2L_32_20495001 chr2L_20495001 RAL-843 784 chr2L 20513547 20513592 chr2L 20513689 20513734 18 141 10.0 6.5 8.2 2.0 187 chr2L 20513547 intergenic CR45702 + chr2L 20513640 intergenic CR45702 + chr2L 20513734 intergenic CR45702 + chr2L_18_20510001 chr2L_20510001 RAL-843 785 chr2L 20550589 20550668 chr2L 20550725 20550747 8 129 3.5 10.0 6.8 1.0 158 chr2L 20550589 intergenic not near genes chr2L 20550668 intergenic not near genes chr2L 20550747 intergenic not near genes chr2L_8_20550001 chr2L_20550001 RAL-843 786 chr2L 20560830 20560883 chr2L 20560967 20561020 18 136 7.0 7.0 7.0 2.2 190 chr2L 20560830 intergenic not near genes chr2L 20560925 intergenic not near genes chr2L 20561020 intergenic not near genes chr2L_18_20560001 chr2L_20560001 RAL-843 787 chr2L 20568611 20568686 chr2L 20569051 20569126 X-element 35 436 6.0 4.5 5.2 5.6 515 chr2L 20568611 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569126 intron CR45347 + chr2L_35_20565001 chr2L_20565001 RAL-843 788 chr2L 20570742 20570799 chr2L 20570873 20570930 20 130 14.0 13.5 13.8 1.4 188 chr2L 20570742 intron CR45347 + chr2L 20570836 intron CR45347 + chr2L 20570930 intron CR45347 + chr2L_20_20570001 chr2L_20570001 RAL-843 789 chr2L 20576176 20576190 chr2L 20583694 20583708 blood 4 7518 18.5 9.0 13.8 0.3 7532 chr2L 20576176 intergenic CR45347 + chr2L 20579942 intergenic not near genes chr2L 20583708 3` UTR CR44909 - chr2L_4_20575001 chr2L_20575001 RAL-843 790 chr2L 20576191 20576243 chr2L 20583689 20583761 blood 20 7517 9.5 9.0 9.2 2.0 7570 chr2L 20576191 intergenic CR45347 + chr2L 20579976 intergenic not near genes chr2L 20583761 3` UTR CR44909 - chr2L_20_20575001 chr2L_20575001 RAL-843 791 chr2L 20597038 20597113 chr2L 20597165 20597218 25 123 9.5 10.0 9.8 2.3 180 chr2L 20597038 intron CR44909 - chr2L 20597128 intron CR44909 - chr2L 20597218 intron CR44909 - chr2L_25_20595001 chr2L_20595001 RAL-843 792 chr2L 20638351 20638404 chr2L 20638494 20638533 18 138 7.5 15.0 11.2 1.5 182 chr2L 20638351 intergenic not near genes chr2L 20638442 intergenic not near genes chr2L 20638533 intergenic not near genes chr2L_18_20635001 chr2L_20635001 RAL-843 793 chr2L 20668675 20668702 chr2L 20668801 20668828 13 126 9.0 11.5 10.2 1.2 153 chr2L 20668675 intron CG31678 - chr2L 20668752 intron CG31678 - chr2L 20668828 intron CG31678 - chr2L_13_20665001 chr2L_20665001 RAL-843 794 chr2L 20674782 20674863 chr2L 20674917 20674990 13 130 6.5 4.0 5.2 2.1 208 chr2L 20674782 intron CG31678 - chr2L 20674886 intron CG31678 - chr2L 20674990 intron CG31678 - chr2L_13_20670001 chr2L_20670001 RAL-843 795 chr2L 20804660 20804667 chr2L 20804795 20804801 6 135 25.5 9.0 17.2 0.3 141 chr2L 20804660 intron CG9328 + chr2L 20804730 intron CG9328 + chr2L 20804801 intron CG9328 + chr2L_6_20800001 chr2L_20800001 RAL-843 796 chr2L 20804669 20804734 chr2L 20804794 20804868 31 132 5.5 9.0 7.2 3.8 199 chr2L 20804669 intron CG9328 + chr2L 20804768 intron CG9328 + chr2L 20804868 intron CG9328 + chr2L_31_20800001 chr2L_20800001 RAL-843 797 chr2L 20835767 20835833 chr2L 20836534 20836600 Quasimodo 18 767 11.0 11.0 11.0 1.5 833 chr2L 20835767 5` UTR Oseg5 - chr2L 20836184 intergenic Oseg5 -,Spn38F - chr2L 20836600 intergenic Spn38F - chr2L_18_20835001 chr2L_20835001 RAL-843 798 chr2L 20891485 20891539 chr2L 20896636 20896679 jockey 24 5149 4.5 8.0 6.2 3.3 5194 chr2L 20891485 intron,intron CG43739 -,sky - chr2L 20894082 intron,intron CG43739 -,sky - chr2L 20896679 intron,intron CG43739 -,sky - chr2L_24_20890001 chr2L_20890001 RAL-843 799 chr2L 20967047 20967054 chr2L 20967183 20967190 4 136 14.0 6.0 10.0 0.4 143 chr2L 20967047 3` UTR CG42238 - chr2L 20967118 3` UTR CG42238 - chr2L 20967190 3` UTR CG42238 - chr2L_4_20965001 chr2L_20965001 RAL-843 800 chr2L 20967055 20967106 chr2L 20967170 20967242 13 134 2.5 4.5 3.5 2.9 187 chr2L 20967055 3` UTR CG42238 - chr2L 20967148 3` UTR CG42238 - chr2L 20967242 3` UTR CG42238 - chr2L_13_20965001 chr2L_20965001 RAL-843 801 chr2L 20976605 20976664 chr2L 20981470 20981529 X-element 28 4863 6.0 8.5 7.2 3.4 4924 chr2L 20976605 intron CG42238 - chr2L 20979067 intron CG42238 - chr2L 20981529 intron CG42238 - chr2L_28_20975001 chr2L_20975001 RAL-843 802 chr2L 21020244 21020298 chr2L 21023971 21024020 NOF 16 3723 8.5 6.5 7.5 1.9 3776 chr2L 21020244 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21024020 intron CG42238 - chr2L_16_21020001 chr2L_21020001 RAL-843 803 chr2L 21041102 21041162 chr2L 21049413 21049461 Tirant 19 8304 8.0 8.0 8.0 2.1 8359 chr2L 21041102 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049461 intron CG42238 - chr2L_19_21045001 chr2L_21045001 RAL-843 804 chr2L 21076365 21076384 chr2L 21076502 21076521 9 135 21.5 13.0 17.2 0.5 156 chr2L 21076365 intron tadr + chr2L 21076443 intron tadr + chr2L 21076521 intron tadr + chr2L_9_21075001 chr2L_21075001 RAL-843 805 chr2L 21076386 21076434 chr2L 21076501 21076571 21 133 10.0 13.0 11.5 1.7 185 chr2L 21076386 intron tadr + chr2L 21076478 intron tadr + chr2L 21076571 intron tadr + chr2L_21_21075001 chr2L_21075001 RAL-843 806 chr2L 21196124 21196192 chr2L 21196300 21196368 34 173 4.5 5.0 4.8 5.9 244 chr2L 21196124 intron Ret - chr2L 21196246 intron Ret - chr2L 21196368 intron Ret - chr2L_34_21195001 chr2L_21195001 RAL-843 807 chr2L 21284014 21284072 chr2L 21284537 21284581 17 522 8.0 8.0 8.0 1.9 567 chr2L 21284014 intergenic not near genes chr2L 21284298 intergenic not near genes chr2L 21284581 intergenic not near genes chr2L_17_21280001 chr2L_21280001 RAL-843 808 chr2L 21285594 21285631 chr2L 21285742 21285779 13 148 17.5 8.5 13.0 0.9 185 chr2L 21285594 intergenic Mio - chr2L 21285686 intergenic Mio - chr2L 21285779 intergenic Mio - chr2L_13_21285001 chr2L_21285001 RAL-843 809 chr2L 21285632 21285664 chr2L 21285735 21285749 15 138 10.5 8.0 9.2 1.5 117 chr2L 21285632 intergenic Mio - chr2L 21285690 intergenic Mio - chr2L 21285749 intergenic Mio - chr2L_15_21285001 chr2L_21285001 RAL-843 810 chr2L 21286563 21286626 chr2L 21286691 21286755 24 126 6.5 11.5 9.0 2.4 192 chr2L 21286563 exon Mio - chr2L 21286659 intron Mio - chr2L 21286755 intron Mio - chr2L_24_21285001 chr2L_21285001 RAL-843 811 chr2L 21307421 21307498 chr2L 21307553 21307630 29 129 8.0 6.0 7.0 3.6 209 chr2L 21307421 intron Mio - chr2L 21307526 intron Mio - chr2L 21307630 intron Mio - chr2L_29_21305001 chr2L_21305001 RAL-843 812 chr2L 21337809 21337815 chr2L 21338324 21338330 BS 6 515 14.5 10.5 12.5 0.4 521 chr2L 21337809 intron dimm + chr2L 21338070 intron dimm + chr2L 21338330 intron dimm + chr2L_6_21335001 chr2L_21335001 RAL-843 813 chr2L 21347508 21347572 chr2L 21355030 21355094 blood 29 7522 7.0 7.5 7.2 3.5 7586 chr2L 21347508 intron Tsp39D + chr2L 21351301 intron Tsp39D + chr2L 21355094 intron Tsp39D + chr2L_29_21350001 chr2L_21350001 RAL-843 814 chr2L 21381177 21381228 chr2L 21381303 21381334 20 132 8.5 13.5 11.0 1.7 157 chr2L 21381177 intron nrv3 + chr2L 21381256 intron nrv3 + chr2L 21381334 intron nrv3 + chr2L_20_21380001 chr2L_21380001 RAL-843 815 chr2L 21396587 21396609 chr2L 21396872 21396894 12 285 1.0 9.0 5.0 2.0 307 chr2L 21396587 intergenic not near genes chr2L 21396740 intergenic not near genes chr2L 21396894 intergenic not near genes chr2L_12_21395001 chr2L_21395001 RAL-843 816 chr2L 21596986 21597057 chr2L 21604780 21604851 roo 8 7792 7.0 6.5 6.8 1.0 7865 chr2L 21596986 intergenic not near genes chr2L 21600918 intergenic not near genes chr2L 21604851 intergenic not near genes chr2L_8_21600001 chr2L_21600001 RAL-843 817 chr2L 21605026 21605059 chr2L 21606739 21606772 10 1713 11.0 10.0 10.5 0.9 1746 chr2L 21605026 intergenic not near genes chr2L 21605899 intergenic not near genes chr2L 21606772 intergenic not near genes chr2L_10_21605001 chr2L_21605001 RAL-843 818 chr2L 21634014 21634051 chr2L 21634228 21634265 12 214 9.0 7.5 8.2 1.3 251 chr2L 21634014 intron Ac3 + chr2L 21634140 intron Ac3 + chr2L 21634265 intron Ac3 + chr2L_12_21630001 chr2L_21630001 RAL-843 819 chr2L 21718692 21718762 chr2L 21718853 21718924 15 153 12.5 8.5 10.5 1.3 232 chr2L 21718692 intron CG31619 + chr2L 21718808 intron CG31619 + chr2L 21718924 intron CG31619 + chr2L_15_21715001 chr2L_21715001 RAL-843 820 chr2L 21743722 21743783 chr2L 21743849 21743910 17 127 6.5 9.0 7.8 1.9 188 chr2L 21743722 intron step - chr2L 21743816 intron step - chr2L 21743910 exon step - chr2L_17_21740001 chr2L_21740001 RAL-843 821 chr2L 21744643 21744698 chr2L 21744780 21744834 26 137 13.5 10.0 11.8 2.0 191 chr2L 21744643 intron step - chr2L 21744738 intron step - chr2L 21744834 intron step - chr2L_26_21740001 chr2L_21740001 RAL-843 822 chr2L 21745208 21745276 chr2L 21745348 21745406 9 139 8.0 10.5 9.2 0.9 198 chr2L 21745208 intron step - chr2L 21745307 intron step - chr2L 21745406 intron step - chr2L_9_21745001 chr2L_21745001 RAL-843 823 chr2L 21750058 21750123 chr2L 21750428 21750496 12 370 8.0 2.5 5.2 1.9 438 chr2L 21750058 intron step - chr2L 21750277 intron step - chr2L 21750496 intron step - chr2L_12_21750001 chr2L_21750001 RAL-843 824 chr2L 21766601 21766675 chr2L 21766737 21766747 20 134 4.5 8.0 6.2 2.8 146 chr2L 21766601 intron CG31612 - chr2L 21766674 intron CG31612 - chr2L 21766747 intron CG31612 - chr2L_20_21765001 chr2L_21765001 RAL-843 825 chr2L 21819280 21819355 chr2L 21819418 21819468 30 134 8.0 10.5 9.2 2.9 188 chr2L 21819280 intergenic CR44786 + chr2L 21819374 intergenic CR44786 + chr2L 21819468 intergenic CR44786 + chr2L_30_21815001 chr2L_21815001 RAL-843 826 chr2L 21898873 21898943 chr2L 21899023 21899105 22 150 4.0 1.5 2.8 5.8 232 chr2L 21898873 intergenic not near genes chr2L 21898989 intergenic not near genes chr2L 21899105 intergenic not near genes chr2L_22_21895001 chr2L_21895001 RAL-843 827 chr2L 21933893 21933922 chr2L 21934008 21934028 6 104 17.0 16.0 16.5 0.3 135 chr2L 21933893 intergenic not near genes chr2L 21933960 intergenic not near genes chr2L 21934028 intergenic not near genes chr2L_6_21930001 chr2L_21930001 RAL-843 828 chr2L 21963735 21963800 chr2L 21963863 21963928 29 127 4.5 6.0 5.2 4.7 193 chr2L 21963735 intergenic not near genes chr2L 21963832 intergenic not near genes chr2L 21963928 intergenic not near genes chr2L_29_21960001 chr2L_21960001 RAL-843 829 chr2L 21981643 21981703 chr2L 21990858 21990909 roo 30 9212 9.0 13.5 11.2 2.5 9266 chr2L 21981643 exon CG2528 - chr2L 21986276 intron CG2528 - chr2L 21990909 exon CG2528 - chr2L_30_21985001 chr2L_21985001 RAL-843 830 chr2L 22011868 22011943 chr2L 22011999 22012068 23 129 8.5 8.5 8.5 2.4 200 chr2L 22011868 intergenic not near genes chr2L 22011968 intergenic not near genes chr2L 22012068 intergenic not near genes chr2L_23_22010001 chr2L_22010001 RAL-843 831 chr2L 22047203 22047255 chr2L 22047378 22047430 29 174 9.5 10.0 9.8 2.7 227 chr2L 22047203 intergenic not near genes chr2L 22047316 intergenic not near genes chr2L 22047430 intergenic not near genes chr2L_29_22045001 chr2L_22045001 RAL-843 832 chr2L 22073020 22073025 chr2L 22073155 22073160 INE-1 4 135 16.0 5.5 10.8 0.3 140 chr2L 22073020 intergenic CG31702 + chr2L 22073090 intergenic CG31702 + chr2L 22073160 intergenic CG31702 + chr2L_4_22070001 chr2L_22070001 RAL-843 833 chr2L 22164925 22164980 chr2L 22165104 22165159 20 179 11.5 5.5 8.5 2.1 234 chr2L 22164925 3` UTR CG42748 + chr2L 22165042 3` UTR CG42748 + chr2L 22165159 3` UTR CG42748 + chr2L_20_22165001 chr2L_22165001 RAL-843 834 chr2L 22165484 22165534 chr2L 22165619 22165669 13 135 8.5 9.0 8.8 1.3 185 chr2L 22165484 3` UTR CG42748 + chr2L 22165576 3` UTR CG42748 + chr2L 22165669 3` UTR CG42748 + chr2L_13_22165001 chr2L_22165001 RAL-843 835 chr2L 22245882 22245885 chr2L 22329196 22329199 gypsy4 4 83314 36.0 31.0 33.5 0.1 83317 chr2L 22245882 3` UTR CG3262 + chr2L 22287540 intergenic not near genes chr2L 22329199 intron CG17018 + chr2L_4_22285001 chr2L_22285001 RAL-843 836 chr2L 22305714 22305785 chr2L 22305842 22305913 21 128 4.0 3.5 3.8 4.4 199 chr2L 22305714 intergenic not near genes chr2L 22305814 intergenic not near genes chr2L 22305913 intergenic not near genes chr2L_21_22305001 chr2L_22305001 RAL-843 837 chr2L 22581931 22581994 chr2L 22583770 22583818 S-element 16 1838 7.0 10.0 8.5 1.7 1887 chr2L 22581931 intron CG17494 + chr2L 22582874 intron CG17494 + chr2L 22583818 intron CG17494 + chr2L_16_22580001 chr2L_22580001 RAL-843 838 chr2L 22776377 22776447 chr2L 22778216 22778286 S-element 22 1839 7.5 3.5 5.5 3.4 1909 chr2L 22776377 intergenic not near genes chr2L 22777332 intergenic not near genes chr2L 22778286 intergenic not near genes chr2L_22_22775001 chr2L_22775001 RAL-843 839 chr2L 23233894 23233896 chr2L 23234023 23234025 5 129 39.5 21.5 30.5 0.2 131 chr2L 23233894 intergenic not near genes chr2L 23233960 intergenic not near genes chr2L 23234025 intergenic not near genes chr2L_5_23230001 chr2L_23230001 RAL-843 840 chr2L 23234007 23234030 chr2L 23239520 23239527 Rt1c 7 5510 15.0 15.0 15.0 0.4 5520 chr2L 23234007 intergenic not near genes chr2L 23236767 intergenic not near genes chr2L 23239527 intergenic not near genes chr2L_7_23235001 chr2L_23235001 RAL-843 841 chr2R 529315 529341 chr2R 537990 538011 Max-element 13 8675 6.0 9.0 7.5 1.5 8696 chr2R 529315 intron CG40378 + chr2R 533663 intron CG40378 + chr2R 538011 intron CG40378 + chr2R_13_530001 chr2R_530001 RAL-843 842 chr2R 552728 552772 chr2R 553977 553994 1360 6 1245 10.5 7.0 8.8 0.6 1266 chr2R 552728 intron CG40378 + chr2R 553361 intron CG40378 + chr2R 553994 intron CG40378 + chr2R_6_550001 chr2R_550001 RAL-843 843 chr2R 1082370 1082378 chr2R 1087161 1087183 Doc 4 4812 8.5 18.0 13.2 0.3 4813 chr2R 1082370 intron rl + chr2R 1084776 intron rl + chr2R 1087183 intron rl + chr2R_4_1080001 chr2R_1080001 RAL-843 844 chr2R 1282338 1282406 chr2R 3998798 3998877 297 7 2716469 16.5 43.5 30.0 0.2 2716539 chr2R 1282338 intergenic not near genes chr2R 2640608 intergenic not near genes chr2R 3998877 intergenic not near genes chr2R_7_2640001 chr2R_2640001 RAL-843 845 chr2R 1513924 1513972 chr2R 1514104 1514175 15 197 104.5 99.0 101.8 0.1 251 chr2R 1513924 3` UTR Maf1 - chr2R 1514050 3` UTR Maf1 - chr2R 1514175 3` UTR Maf1 - chr2R_15_1510001 chr2R_1510001 RAL-843 846 chr2R 1516564 1516571 chr2R 1521342 1521349 1731 12 4778 72.0 20.5 46.2 0.3 4785 chr2R 1516564 exon Maf1 - chr2R 1518956 intron Maf1 - chr2R 1521349 5` UTR Maf1 - chr2R_12_1515001 chr2R_1515001 RAL-843 847 chr2R 1516580 1516603 chr2R 1521352 1521381 1731 23 4778 54.5 26.5 40.5 0.6 4801 chr2R 1516580 exon Maf1 - chr2R 1518980 intron Maf1 - chr2R 1521381 5` UTR Maf1 - chr2R_23_1515001 chr2R_1515001 RAL-843 848 chr2R 2110473 2110491 chr2R 2118081 2118099 17.6 5 7607 6.5 6.5 6.5 0.7 7626 chr2R 2110473 intron CG17684 - chr2R 2114286 intron CG17684 - chr2R 2118099 intron CG17684 - chr2R_5_2110001 chr2R_2110001 RAL-843 849 chr2R 2498948 2499000 chr2R 2508145 2508197 roo 25 9197 11.0 11.0 11.0 2.1 9249 chr2R 2498948 intron MFS17 - chr2R 2503572 intron MFS17 - chr2R 2508197 intron MFS17 - chr2R_25_2500001 chr2R_2500001 RAL-843 850 chr2R 2591485 2591507 chr2R 2594211 2594233 roo 10 2726 31.0 28.0 29.5 0.3 2748 chr2R 2591485 intergenic not near genes chr2R 2592859 intergenic not near genes chr2R 2594233 intergenic not near genes chr2R_10_2590001 chr2R_2590001 RAL-843 851 chr2R 3144041 3144110 chr2R 3393369 3393438 Doc 11 249328 16.5 26.0 21.2 0.5 249397 chr2R 3144041 intron CG42596 + chr2R 3268740 intergenic not near genes chr2R 3393438 intergenic not near genes chr2R_11_3265001 chr2R_3265001 RAL-843 852 chr2R 3291953 3292103 chr2R 3915172 3915314 5 623212 17.5 7.0 12.2 0.4 623361 chr2R 3291953 intergenic not near genes chr2R 3603634 intergenic not near genes chr2R 3915314 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-843 853 chr2R 3532578 3532632 chr2R 3536071 3536125 Doc 11 3492 4.5 5.0 4.8 1.9 3547 chr2R 3532578 intergenic not near genes chr2R 3534352 intergenic not near genes chr2R 3536125 intergenic not near genes chr2R_11_3530001 chr2R_3530001 RAL-843 854 chr2R 3292052 3292053 chr2R 3915104 3915127 5 623056 20.5 21.0 20.8 0.2 623075 chr2R 3292052 intergenic not near genes chr2R 3603590 intergenic not near genes chr2R 3915127 intron uex - chr2R_5_3600001 chr2R_3600001 RAL-843 855 chr2R 4186878 4186946 chr2R 4187276 4187324 29 397 6.5 8.0 7.2 3.5 446 chr2R 4186878 3` UTR CG40127 - chr2R 4187101 3` UTR CG40127 - chr2R 4187324 3` UTR CG40127 - chr2R_29_4185001 chr2R_4185001 RAL-843 856 chr2R 4604510 4604529 chr2R 4604639 4604653 10 127 14.0 13.0 13.5 0.7 143 chr2R 4604510 intron p120ctn + chr2R 4604582 intron p120ctn + chr2R 4604653 intron p120ctn + chr2R_10_4600001 chr2R_4600001 RAL-843 857 chr2R 4604530 4604582 chr2R 4604634 4604702 22 121 9.0 11.0 10.0 2.0 172 chr2R 4604530 intron p120ctn + chr2R 4604616 intron p120ctn + chr2R 4604702 intron p120ctn + chr2R_22_4600001 chr2R_4600001 RAL-843 858 chr2R 4617897 4617941 chr2R 4618219 4618263 10 319 6.0 13.0 9.5 1.0 366 chr2R 4617897 intergenic not near genes chr2R 4618080 intergenic not near genes chr2R 4618263 intergenic not near genes chr2R_10_4615001 chr2R_4615001 RAL-843 859 chr2R 4622929 4622977 chr2R 4624117 4624186 1360 30 1205 9.5 12.0 10.8 2.5 1257 chr2R 4622929 intergenic CR44101 - chr2R 4623558 intergenic not near genes chr2R 4624186 intergenic not near genes chr2R_30_4620001 chr2R_4620001 RAL-843 860 chr2R 4624616 4624669 chr2R 4626554 4626594 Bica 28 1950 7.5 7.0 7.2 3.4 1978 chr2R 4624616 intergenic not near genes chr2R 4625605 intergenic not near genes chr2R 4626594 intergenic not near genes chr2R_28_4625001 chr2R_4625001 RAL-843 861 chr2R 4634153 4634183 chr2R 4634282 4634312 12 129 8.0 20.0 14.0 0.8 159 chr2R 4634153 intergenic not near genes chr2R 4634232 intergenic not near genes chr2R 4634312 intergenic not near genes chr2R_12_4630001 chr2R_4630001 RAL-843 862 chr2R 4702454 4702503 chr2R 4702642 4702691 21 188 5.0 10.0 7.5 2.5 237 chr2R 4702454 intron Nipped-B - chr2R 4702572 intron Nipped-B - chr2R 4702691 intron Nipped-B - chr2R_21_4700001 chr2R_4700001 RAL-843 863 chr2R 4750300 4750367 chr2R 4751507 4751518 1360 20 1204 5.0 4.5 4.8 3.4 1218 chr2R 4750300 intron conu + chr2R 4750909 intron conu + chr2R 4751518 intron conu + chr2R_20_4750001 chr2R_4750001 RAL-843 864 chr2R 4783378 4783423 chr2R 4783506 4783550 20 128 20.5 13.5 17.0 1.1 172 chr2R 4783378 intergenic not near genes chr2R 4783464 intergenic not near genes chr2R 4783550 intergenic not near genes chr2R_20_4780001 chr2R_4780001 RAL-843 865 chr2R 4783430 4783444 chr2R 4783548 4783572 13 125 15.5 26.0 20.8 0.6 142 chr2R 4783430 intergenic not near genes chr2R 4783501 intergenic not near genes chr2R 4783572 intergenic not near genes chr2R_13_4780001 chr2R_4780001 RAL-843 866 chr2R 4821180 4821242 chr2R 4821316 4821378 21 135 7.5 13.0 10.2 1.9 198 chr2R 4821180 intron CG17528 - chr2R 4821279 intron CG17528 - chr2R 4821378 intron CG17528 - chr2R_21_4820001 chr2R_4820001 RAL-843 867 chr2R 4825123 4825123 chr2R 22311215 22311217 5 17486093 29.5 23.5 26.5 0.2 17486094 chr2R 4825123 intergenic not near genes chr2R 13568170 intergenic not near genes chr2R 22311217 intron wdp - chr2R_5_13565001 chr2R_13565001 RAL-843 868 chr2R 4838833 4838839 chr2R 4840406 4840412 transib2 4 1573 28.0 11.0 19.5 0.2 1579 chr2R 4838833 intergenic not near genes chr2R 4839622 intergenic not near genes chr2R 4840412 intergenic not near genes chr2R_4_4835001 chr2R_4835001 RAL-843 869 chr2R 4838845 4838898 chr2R 4840394 4840456 transib2 19 1569 10.0 8.5 9.2 1.9 1611 chr2R 4838845 intergenic not near genes chr2R 4839650 intergenic not near genes chr2R 4840456 intergenic not near genes chr2R_19_4835001 chr2R_4835001 RAL-843 870 chr2R 4870695 4870737 chr2R 4871256 4871298 R1A1-element 9 560 8.0 9.5 8.8 0.9 603 chr2R 4870695 intergenic not near genes chr2R 4870996 intergenic not near genes chr2R 4871298 intergenic not near genes chr2R_9_4870001 chr2R_4870001 RAL-843 871 chr2R 4942013 4942077 chr2R 4942188 4942252 15 172 4.0 7.0 5.5 2.3 239 chr2R 4942013 intron Ir41a + chr2R 4942132 intron Ir41a + chr2R 4942252 intron Ir41a + chr2R_15_4940001 chr2R_4940001 RAL-843 872 chr2R 4956975 4957048 chr2R 4957128 4957201 29 152 6.5 7.0 6.8 3.7 226 chr2R 4956975 intron Ir41a + chr2R 4957088 intron Ir41a + chr2R 4957201 intron Ir41a + chr2R_29_4955001 chr2R_4955001 RAL-843 873 chr2R 5008846 5008895 chr2R 5009941 5010014 14 1108 0.0 5.0 2.5 4.0 1168 chr2R 5008846 intron Ir41a + chr2R 5009430 intron Ir41a + chr2R 5010014 intron Ir41a + chr2R_14_5005001 chr2R_5005001 RAL-843 874 chr2R 5028508 5028542 chr2R 5028706 5028754 8 208 15.0 0.0 7.5 0.9 246 chr2R 5028508 intergenic not near genes chr2R 5028631 intergenic not near genes chr2R 5028754 intergenic not near genes chr2R_8_5025001 chr2R_5025001 RAL-843 875 chr2R 5022740 5022747 chr2R 5031500 5031507 1360 5 8761 37.5 48.0 42.8 0.1 8767 chr2R 5022740 intergenic not near genes chr2R 5027124 intergenic not near genes chr2R 5031507 intergenic CR44105 - chr2R_5_5025001 chr2R_5025001 RAL-843 876 chr2R 5022730 5022779 chr2R 5031509 5031539 16 8763 47.5 45.0 46.2 0.3 8809 chr2R 5022730 intergenic not near genes chr2R 5027134 intergenic not near genes chr2R 5031539 intergenic CR44105 - chr2R_16_5025001 chr2R_5025001 RAL-843 877 chr2R 5125196 5125276 chr2R 5125564 5125640 26 365 5.5 6.5 6.0 3.7 444 chr2R 5125196 intron gus - chr2R 5125418 intron gus - chr2R 5125640 intron gus - chr2R_26_5125001 chr2R_5125001 RAL-843 878 chr2R 5144879 5144920 chr2R 5145005 5145046 12 126 6.5 5.0 5.8 1.8 167 chr2R 5144879 intron Atf6 + chr2R 5144962 intron Atf6 + chr2R 5145046 intron Atf6 + chr2R_12_5140001 chr2R_5140001 RAL-843 879 chr2R 5237301 5237335 chr2R 5237433 5237467 17 132 11.5 0.0 5.8 2.5 166 chr2R 5237301 intron Nipped-A - chr2R 5237384 intron Nipped-A - chr2R 5237467 intron Nipped-A - chr2R_17_5235001 chr2R_5235001 RAL-843 880 chr2R 5256713 5256725 chr2R 5256851 5256863 21 138 73.0 21.0 47.0 0.4 150 chr2R 5256713 intergenic not near genes chr2R 5256788 intergenic not near genes chr2R 5256863 intergenic not near genes chr2R_21_5255001 chr2R_5255001 RAL-843 881 chr2R 5256728 5256784 chr2R 5256849 5256922 73 136 29.0 19.5 24.2 2.9 194 chr2R 5256728 intergenic not near genes chr2R 5256825 intergenic not near genes chr2R 5256922 intergenic not near genes chr2R_73_5255001 chr2R_5255001 RAL-843 882 chr2R 5258519 5258537 chr2R 5262252 5262270 S-element 4 3733 50.0 43.0 46.5 0.1 3751 chr2R 5258519 intergenic d4 + chr2R 5260394 intron d4 + chr2R 5262270 intron d4 + chr2R_4_5260001 chr2R_5260001 RAL-843 883 chr2R 5258538 5258578 chr2R 5262249 5262311 S-element 17 3730 41.5 41.5 41.5 0.4 3773 chr2R 5258538 intergenic d4 + chr2R 5260424 intron d4 + chr2R 5262311 intron d4 + chr2R_17_5260001 chr2R_5260001 RAL-843 884 chr2R 5302089 5302177 chr2R 5304187 5304270 29 2097 94.0 129.0 111.5 0.3 2181 chr2R 5302089 intergenic not near genes chr2R 5303180 intergenic not near genes chr2R 5304270 intergenic not near genes chr2R_29_5300001 chr2R_5300001 RAL-843 885 chr2R 5417957 5418023 chr2R 5420639 5420705 Burdock 22 2682 7.5 10.5 9.0 2.2 2748 chr2R 5417957 intron laccase2 + chr2R 5419331 intron laccase2 + chr2R 5420705 intron laccase2 + chr2R_22_5415001 chr2R_5415001 RAL-843 886 chr2R 5491621 5491688 chr2R 5491759 5491818 21 142 6.5 8.5 7.5 2.5 197 chr2R 5491621 intron CG30440 - chr2R 5491720 intron CG30440 - chr2R 5491818 intron CG30440 - chr2R_21_5490001 chr2R_5490001 RAL-843 887 chr2R 5543197 5543212 chr2R 5547331 5547346 invader1 4 4134 0.0 20.5 10.2 0.4 4149 chr2R 5543197 intron CG30438 + chr2R 5545272 intron CG30438 + chr2R 5547346 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-843 888 chr2R 5581402 5581405 chr2R 5627650 5627664 4 46256 16.0 28.0 22.0 0.2 46262 chr2R 5581402 intergenic not near genes chr2R 5604533 intron Fis1 - chr2R 5627664 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-843 889 chr2R 5581406 5581412 chr2R 5627645 5627669 7 46255 12.0 27.5 19.8 0.3 46263 chr2R 5581406 intergenic not near genes chr2R 5604538 intron Fis1 - chr2R 5627669 intergenic not near genes chr2R_7_5600001 chr2R_5600001 RAL-843 890 chr2R 5129494 5129500 chr2R 5665133 5665139 6 535639 44.5 21.0 32.8 0.2 535645 chr2R 5129494 intergenic CR43256 + chr2R 5397316 intergenic not near genes chr2R 5665139 intron CR45472 + chr2R_6_5395001 chr2R_5395001 RAL-843 891 chr2R 5710605 5710672 chr2R 5710732 5710799 16 127 4.5 8.5 6.5 2.1 194 chr2R 5710605 intron ap - chr2R 5710702 intron ap - chr2R 5710799 intron ap - chr2R_16_5710001 chr2R_5710001 RAL-843 892 chr2R 5750406 5750446 chr2R 5750548 5750588 19 142 11.0 11.5 11.2 1.6 182 chr2R 5750406 intergenic not near genes chr2R 5750497 intergenic not near genes chr2R 5750588 intergenic not near genes chr2R_19_5750001 chr2R_5750001 RAL-843 893 chr2R 5869232 5869299 chr2R 5874358 5874425 flea 29 5125 11.5 13.5 12.5 2.1 5193 chr2R 5869232 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874425 intergenic not near genes chr2R_29_5870001 chr2R_5870001 RAL-843 894 chr2R 5878878 5878951 chr2R 5879008 5879081 25 128 5.5 7.0 6.2 3.5 203 chr2R 5878878 intergenic CG44438 - chr2R 5878980 intergenic CG44438 - chr2R 5879081 intergenic CG44438 - chr2R_25_5875001 chr2R_5875001 RAL-843 895 chr2R 5885328 5885376 chr2R 5885507 5885555 21 179 8.0 5.5 6.8 2.7 227 chr2R 5885328 5` UTR CR44125 + chr2R 5885442 5` UTR CR44125 + chr2R 5885555 5` UTR CR44125 + chr2R_21_5885001 chr2R_5885001 RAL-843 896 chr2R 5902117 5902183 chr2R 5909726 5909792 17.6 16 7609 9.0 10.0 9.5 1.5 7675 chr2R 5902117 5` UTR CG43366 + chr2R 5905954 intron CG43366 + chr2R 5909792 intron CG43366 + chr2R_16_5905001 chr2R_5905001 RAL-843 897 chr2R 5983710 5983776 chr2R 5984226 5984292 28 514 5.0 10.0 7.5 3.3 582 chr2R 5983710 intron Src42A + chr2R 5984001 intron Src42A + chr2R 5984292 intron Src42A + chr2R_28_5980001 chr2R_5980001 RAL-843 898 chr2R 5993181 5993201 chr2R 5993308 5993328 8 124 21.5 14.0 17.8 0.4 147 chr2R 5993181 intron Src42A + chr2R 5993254 intron Src42A + chr2R 5993328 intron Src42A + chr2R_8_5990001 chr2R_5990001 RAL-843 899 chr2R 5993202 5993247 chr2R 5993299 5993367 29 116 10.0 12.0 11.0 2.4 165 chr2R 5993202 intron Src42A + chr2R 5993284 intron Src42A + chr2R 5993367 intron Src42A + chr2R_29_5990001 chr2R_5990001 RAL-843 900 chr2R 6096680 6096692 chr2R 6101923 6101934 BS 4 5244 25.5 12.0 18.8 0.2 5254 chr2R 6096680 intron EcR - chr2R 6099307 intron EcR - chr2R 6101934 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-843 901 chr2R 6096708 6096741 chr2R 6101920 6101989 BS 19 5237 15.0 10.5 12.8 1.4 5281 chr2R 6096708 intron EcR - chr2R 6099348 intron EcR - chr2R 6101989 intron EcR - chr2R_19_6095001 chr2R_6095001 RAL-843 902 chr2R 6125844 6125913 chr2R 6126073 6126131 28 225 13.0 7.0 10.0 2.5 287 chr2R 6125844 intron EcR - chr2R 6125988 intron EcR - chr2R 6126131 intron EcR - chr2R_28_6125001 chr2R_6125001 RAL-843 903 chr2R 6126897 6126958 chr2R 6127055 6127116 34 157 11.0 8.0 9.5 3.2 219 chr2R 6126897 intron EcR - chr2R 6127006 intron EcR - chr2R 6127116 intron EcR - chr2R_34_6125001 chr2R_6125001 RAL-843 904 chr2R 6135541 6135605 chr2R 6135686 6135750 30 143 11.5 7.0 9.2 2.9 209 chr2R 6135541 intron EcR - chr2R 6135646 intron EcR - chr2R 6135750 intron EcR - chr2R_30_6135001 chr2R_6135001 RAL-843 905 chr2R 6178072 6178144 chr2R 6178248 6178320 23 176 3.0 7.0 5.0 3.8 248 chr2R 6178072 intergenic not near genes chr2R 6178196 intergenic not near genes chr2R 6178320 intergenic not near genes chr2R_23_6175001 chr2R_6175001 RAL-843 906 chr2R 6194643 6194651 chr2R 6194776 6194784 5 133 30.5 13.5 22.0 0.2 141 chr2R 6194643 intron Ptr - chr2R 6194714 intron Ptr - chr2R 6194784 intron Ptr - chr2R_5_6190001 chr2R_6190001 RAL-843 907 chr2R 6194652 6194686 chr2R 6194774 6194819 8 130 21.0 12.5 16.8 0.4 167 chr2R 6194652 intron Ptr - chr2R 6194736 intron Ptr - chr2R 6194819 intron Ptr - chr2R_8_6190001 chr2R_6190001 RAL-843 908 chr2R 3998871 3998903 chr2R 6486806 6486828 5 2487929 41.5 27.0 34.2 0.1 2487957 chr2R 3998871 intergenic not near genes chr2R 5242850 intron Nipped-A - chr2R 6486828 intergenic not near genes chr2R_5_5240001 chr2R_5240001 RAL-843 909 chr2R 6494493 6494548 chr2R 6499304 6499340 F-element 13 4810 7.5 3.0 5.2 2.1 4847 chr2R 6494493 intergenic not near genes chr2R 6496916 intergenic not near genes chr2R 6499340 intergenic not near genes chr2R_13_6495001 chr2R_6495001 RAL-843 910 chr2R 6530719 6530790 chr2R 6530849 6530920 26 130 7.5 4.0 5.8 3.8 201 chr2R 6530719 intron jing + chr2R 6530820 intron jing + chr2R 6530920 intron jing + chr2R_26_6530001 chr2R_6530001 RAL-843 911 chr2R 6579733 6579794 chr2R 6584869 6584930 flea 20 5136 9.5 8.5 9.0 2.0 5197 chr2R 6579733 intron jing + chr2R 6582332 intron jing + chr2R 6584930 intron jing + chr2R_20_6580001 chr2R_6580001 RAL-843 912 chr2R 6612093 6612112 chr2R 6612223 6612242 5 130 17.5 15.0 16.2 0.3 149 chr2R 6612093 intron jing + chr2R 6612168 intron jing + chr2R 6612242 intron jing + chr2R_5_6610001 chr2R_6610001 RAL-843 913 chr2R 6612116 6612155 chr2R 6612215 6612285 16 124 7.5 13.5 10.5 1.4 169 chr2R 6612116 intron jing + chr2R 6612200 intron jing + chr2R 6612285 intron jing + chr2R_16_6610001 chr2R_6610001 RAL-843 914 chr2R 6694004 6694081 chr2R 6694408 6694478 17 394 3.5 6.0 4.8 2.9 474 chr2R 6694004 exon CG3270 + chr2R 6694241 exon CG3270 + chr2R 6694478 exon CG3270 + chr2R_17_6690001 chr2R_6690001 RAL-843 915 chr2R 6753560 6753599 chr2R 6753682 6753726 24 123 20.0 14.5 17.2 1.3 166 chr2R 6753560 intron Eb1 + chr2R 6753643 intron Eb1 + chr2R 6753726 intron Eb1 + chr2R_24_6750001 chr2R_6750001 RAL-843 916 chr2R 6947683 6947733 chr2R 6948347 6948387 13 659 9.0 7.0 8.0 1.4 704 chr2R 6947683 intron,intron mim -,CheB42c - chr2R 6948035 intron,intron mim -,CheB42c - chr2R 6948387 intron,intron mim -,CheB42c - chr2R_13_6945001 chr2R_6945001 RAL-843 917 chr2R 6952129 6952182 chr2R 6959751 6959812 opus 19 7629 11.0 8.0 9.5 1.8 7683 chr2R 6952129 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955970 intron,intron mim -,CheB42c - chr2R 6959812 intron,intron mim -,CheB42c - chr2R_19_6955001 chr2R_6955001 RAL-843 918 chr2R 7091170 7091228 chr2R 7091302 7091360 25 132 10.0 8.5 9.2 2.5 190 chr2R 7091170 intron esn + chr2R 7091265 intron esn + chr2R 7091360 intron esn + chr2R_25_7090001 chr2R_7090001 RAL-843 919 chr2R 7153125 7153191 chr2R 7153250 7153317 36 131 6.0 5.5 5.8 5.3 192 chr2R 7153125 intron,exon pk +,Spn43Ab - chr2R 7153221 intron,intron pk +,Spn43Ab - chr2R 7153317 intron,intron pk +,Spn43Ab - chr2R_36_7150001 chr2R_7150001 RAL-843 920 chr2R 7171239 7171250 chr2R 7171375 7171375 4 133 16.0 12.5 14.2 0.3 136 chr2R 7171239 intron pk + chr2R 7171307 intron pk + chr2R 7171375 intron pk + chr2R_4_7170001 chr2R_7170001 RAL-843 921 chr2R 7171253 7171279 chr2R 7171374 7171415 10 134 11.5 12.0 11.8 0.8 162 chr2R 7171253 intron pk + chr2R 7171334 intron pk + chr2R 7171415 intron pk + chr2R_10_7170001 chr2R_7170001 RAL-843 922 chr2R 7196530 7196588 chr2R 7201352 7201413 F-element 15 4822 2.0 8.0 5.0 2.5 4883 chr2R 7196530 intron pk + chr2R 7198972 intron pk + chr2R 7201413 intron pk + chr2R_15_7195001 chr2R_7195001 RAL-843 923 chr2R 7209844 7209863 chr2R 7217642 7217661 roo 12 7798 8.0 10.5 9.2 1.2 7817 chr2R 7209844 intron pk + chr2R 7213752 intron pk + chr2R 7217661 intron pk + chr2R_12_7210001 chr2R_7210001 RAL-843 924 chr2R 7235779 7235814 chr2R 7240921 7240942 jockey 8 5136 16.0 7.5 11.8 0.6 5163 chr2R 7235779 intergenic not near genes chr2R 7238360 intergenic not near genes chr2R 7240942 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-843 925 chr2R 7235816 7235845 chr2R 7240920 7240957 jockey 6 5130 9.5 6.5 8.0 0.7 5141 chr2R 7235816 intergenic not near genes chr2R 7238386 intergenic not near genes chr2R 7240957 intergenic not near genes chr2R_6_7235001 chr2R_7235001 RAL-843 926 chr2R 7252706 7252748 chr2R 7252836 7252903 21 145 10.5 9.5 10.0 1.9 197 chr2R 7252706 intergenic not near genes chr2R 7252804 intergenic not near genes chr2R 7252903 intergenic not near genes chr2R_21_7250001 chr2R_7250001 RAL-843 927 chr2R 7262149 7262202 chr2R 7269259 7269312 297 12 7106 7.0 12.0 9.5 1.1 7163 chr2R 7262149 intergenic not near genes chr2R 7265730 intergenic not near genes chr2R 7269312 intergenic not near genes chr2R_12_7265001 chr2R_7265001 RAL-843 928 chr2R 7325173 7325209 chr2R 7325733 7325753 12 559 15.0 8.5 11.8 0.9 580 chr2R 7325173 intron Dscam1 - chr2R 7325463 intron Dscam1 - chr2R 7325753 intron Dscam1 - chr2R_12_7325001 chr2R_7325001 RAL-843 929 chr2R 7325212 7325244 chr2R 7325730 7325805 13 558 7.5 8.5 8.0 1.4 593 chr2R 7325212 intron Dscam1 - chr2R 7325508 intron Dscam1 - chr2R 7325805 intron Dscam1 - chr2R_13_7325001 chr2R_7325001 RAL-843 930 chr2R 7328078 7328141 chr2R 7328239 7328302 19 159 1.5 10.5 6.0 2.7 224 chr2R 7328078 intron,intron Dscam1 -,CR45129 + chr2R 7328190 intron,intron Dscam1 -,CR45129 + chr2R 7328302 intron,intron Dscam1 -,CR45129 + chr2R_19_7325001 chr2R_7325001 RAL-843 931 chr2R 7417858 7418154 chr2R 7417994 7418283 35 130 10.0 12.0 11.0 2.9 425 chr2R 7417858 intergenic not near genes chr2R 7418070 intergenic not near genes chr2R 7418283 intergenic not near genes chr2R_35_7415001 chr2R_7415001 RAL-843 932 chr2R 7434856 7434901 chr2R 7439207 7439252 Juan 15 4351 7.5 10.0 8.8 1.5 4396 chr2R 7434856 3` UTR so + chr2R 7437054 intergenic not near genes chr2R 7439252 intergenic not near genes chr2R_15_7435001 chr2R_7435001 RAL-843 933 chr2R 7608339 7608421 chr2R 7613606 7613673 I-element 7 5254 0.0 0.0 0.0 7.0 5334 chr2R 7608339 intron CG1358 - chr2R 7611006 intron CG1358 - chr2R 7613673 intron CG1358 - chr2R_7_7610001 chr2R_7610001 RAL-843 934 chr2R 7621244 7621310 chr2R 7621400 7621466 25 152 9.0 15.5 12.2 1.9 222 chr2R 7621244 intergenic not near genes chr2R 7621355 intergenic not near genes chr2R 7621466 intergenic CR44444 - chr2R_25_7620001 chr2R_7620001 RAL-843 935 chr2R 7815629 7815691 chr2R 7822148 7822210 Burdock 35 6518 6.0 9.5 7.8 4.0 6581 chr2R 7815629 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822210 3` UTR cathD - chr2R_35_7815001 chr2R_7815001 RAL-843 936 chr2R 7842150 7842221 chr2R 7842288 7842359 33 136 6.5 8.0 7.2 4.0 209 chr2R 7842150 intron Dgk - chr2R 7842254 intron Dgk - chr2R 7842359 intron Dgk - chr2R_33_7840001 chr2R_7840001 RAL-843 937 chr2R 7862185 7862251 chr2R 7867349 7867414 flea 13 5162 6.5 6.0 6.2 1.8 5229 chr2R 7862185 intron Dgk - chr2R 7864800 intron Dgk - chr2R 7867414 intron Dgk - chr2R_13_7860001 chr2R_7860001 RAL-843 938 chr2R 7869147 7869201 chr2R 7873983 7874031 Doc 20 4834 15.0 17.0 16.0 1.2 4884 chr2R 7869147 intron Dgk - chr2R 7871589 intron Dgk - chr2R 7874031 intron Dgk - chr2R_20_7870001 chr2R_7870001 RAL-843 939 chr2R 7884150 7884224 chr2R 7884284 7884333 21 125 6.5 7.0 6.8 2.7 183 chr2R 7884150 intron Dgk - chr2R 7884242 intron Dgk - chr2R 7884333 intron Dgk - chr2R_21_7880001 chr2R_7880001 RAL-843 940 chr2R 7929544 7929599 chr2R 7929687 7929764 23 156 11.5 11.0 11.2 1.9 220 chr2R 7929544 exon CG8791 + chr2R 7929654 3` UTR CG8791 + chr2R 7929764 3` UTR,3` UTR CG8791 +,CG30381 - chr2R_23_7925001 chr2R_7925001 RAL-843 941 chr2R 7952094 7952165 chr2R 7952414 7952484 14 318 5.5 7.0 6.2 1.9 390 chr2R 7952094 intron CG14764 - chr2R 7952289 intron CG14764 - chr2R 7952484 intron CG14764 - chr2R_14_7950001 chr2R_7950001 RAL-843 942 chr2R 7956041 7956115 chr2R 7956167 7956241 27 125 10.5 12.5 11.5 2.2 200 chr2R 7956041 intergenic CG2906 +,CG14764 - chr2R 7956141 intergenic CG2906 +,CG14764 - chr2R 7956241 exon CG2906 + chr2R_27_7955001 chr2R_7955001 RAL-843 943 chr2R 8006804 8006873 chr2R 8007013 8007082 42 208 9.0 8.5 8.8 4.3 278 chr2R 8006804 intergenic Odc1 +,Odc2 + chr2R 8006943 intergenic Odc1 +,Odc2 + chr2R 8007082 intergenic Odc2 +,Odc1 + chr2R_42_8005001 chr2R_8005001 RAL-843 944 chr2R 8008823 8008886 chr2R 8008972 8009035 22 149 7.0 8.0 7.5 2.6 212 chr2R 8008823 intron Odc2 + chr2R 8008929 exon Odc2 + chr2R 8009035 3` UTR Odc2 + chr2R_22_8005001 chr2R_8005001 RAL-843 945 chr2R 8015611 8015637 chr2R 8017684 8017710 8 2071 18.5 11.5 15.0 0.5 2099 chr2R 8015611 intergenic mir-4981 + chr2R 8016660 intergenic not near genes chr2R 8017710 intergenic not near genes chr2R_8_8015001 chr2R_8015001 RAL-843 946 chr2R 8015649 8015675 chr2R 8017682 8017748 10 2062 8.0 10.5 9.2 1.0 2099 chr2R 8015649 intergenic mir-4981 + chr2R 8016698 intergenic not near genes chr2R 8017748 intergenic not near genes chr2R_10_8015001 chr2R_8015001 RAL-843 947 chr2R 8036211 8036216 chr2R 8036343 8036348 6 132 24.5 7.5 16.0 0.4 137 chr2R 8036211 intron Optix + chr2R 8036280 intron Optix + chr2R 8036348 intron Optix + chr2R_6_8035001 chr2R_8035001 RAL-843 948 chr2R 8036217 8036280 chr2R 8036335 8036380 13 126 11.0 6.0 8.5 1.4 163 chr2R 8036217 intron Optix + chr2R 8036298 intron Optix + chr2R 8036380 intron Optix + chr2R_13_8035001 chr2R_8035001 RAL-843 949 chr2R 8066203 8066238 chr2R 8067184 8067219 12 981 2.5 12.0 7.2 1.5 1016 chr2R 8066203 intergenic CG17977 - chr2R 8066711 3` UTR CG17977 - chr2R 8067219 exon CG17977 - chr2R_12_8065001 chr2R_8065001 RAL-843 950 chr2R 8076637 8076707 chr2R 8076767 8076837 44 130 13.5 7.5 10.5 3.8 200 chr2R 8076637 intron lig + chr2R 8076737 intron lig + chr2R 8076837 intron lig + chr2R_44_8075001 chr2R_8075001 RAL-843 951 chr2R 8089207 8089277 chr2R 8089343 8089413 29 136 5.0 7.5 6.2 4.0 206 chr2R 8089207 exon sut2 + chr2R 8089310 intergenic sut2 +,sut3 + chr2R 8089413 intergenic sut3 +,sut2 + chr2R_29_8085001 chr2R_8085001 RAL-843 952 chr2R 8113990 8114056 chr2R 8114118 8114195 24 136 0.0 7.0 3.5 5.3 205 chr2R 8113990 intergenic Asap - chr2R 8114092 intergenic Asap - chr2R 8114195 intergenic Asap - chr2R_24_8110001 chr2R_8110001 RAL-843 953 chr2R 8157850 8157874 chr2R 8157988 8158011 12 136 20.5 9.0 14.8 0.8 161 chr2R 8157850 5` UTR CR44068 + chr2R 8157930 5` UTR CR44068 + chr2R 8158011 5` UTR CR44068 + chr2R_12_8155001 chr2R_8155001 RAL-843 954 chr2R 8157879 8157909 chr2R 8157997 8158027 15 131 10.0 12.0 11.0 1.2 148 chr2R 8157879 5` UTR CR44068 + chr2R 8157953 5` UTR CR44068 + chr2R 8158027 5` UTR CR44068 + chr2R_15_8155001 chr2R_8155001 RAL-843 955 chr2R 8160888 8160945 chr2R 8161026 8161065 1360 23 135 9.0 22.5 15.8 1.4 177 chr2R 8160888 exon CG8708 - chr2R 8160976 intron CG8708 - chr2R 8161065 intron CG8708 - chr2R_23_8160001 chr2R_8160001 RAL-843 956 chr2R 8203712 8203754 chr2R 8203854 8203896 16 142 10.5 6.5 8.5 1.7 184 chr2R 8203712 intron LRP1 + chr2R 8203804 intron LRP1 + chr2R 8203896 intron LRP1 + chr2R_16_8200001 chr2R_8200001 RAL-843 957 chr2R 8249523 8249808 chr2R 8249655 8249942 33 134 12.5 7.5 10.0 3.0 419 chr2R 8249523 5` UTR CG44439 - chr2R 8249732 intergenic CG44439 - chr2R 8249942 intergenic CG44439 - chr2R_33_8245001 chr2R_8245001 RAL-843 958 chr2R 8249816 8249848 chr2R 8249960 8249992 5 142 5.0 14.0 9.5 0.5 176 chr2R 8249816 intergenic CG44439 - chr2R 8249904 intergenic CG44439 - chr2R 8249992 intergenic CG44439 - chr2R_5_8245001 chr2R_8245001 RAL-843 959 chr2R 8266494 8266536 chr2R 8266661 8266668 5 150 20.5 9.0 14.8 0.3 174 chr2R 8266494 intron CG30375 - chr2R 8266581 exon CG30375 - chr2R 8266668 exon CG30375 - chr2R_5_8265001 chr2R_8265001 RAL-843 960 chr2R 8266537 8266565 chr2R 8266660 8266688 10 124 11.0 9.0 10.0 0.9 151 chr2R 8266537 intron CG30375 - chr2R 8266612 exon CG30375 - chr2R 8266688 exon CG30375 - chr2R_10_8265001 chr2R_8265001 RAL-843 961 chr2R 8277600 8277615 chr2R 8277737 8277753 6 140 19.5 10.5 15.0 0.4 153 chr2R 8277600 5` UTR CR44280 + chr2R 8277676 5` UTR CR44280 + chr2R 8277753 5` UTR CR44280 + chr2R_6_8275001 chr2R_8275001 RAL-843 962 chr2R 8277617 8277659 chr2R 8277730 8277804 26 128 10.5 9.5 10.0 2.4 187 chr2R 8277617 5` UTR CR44280 + chr2R 8277710 5` UTR CR44280 + chr2R 8277804 5` UTR CR44280 + chr2R_26_8275001 chr2R_8275001 RAL-843 963 chr2R 8314520 8314523 chr2R 8314667 8314670 4 147 0.0 5.0 2.5 1.1 150 chr2R 8314520 intergenic not near genes chr2R 8314595 intergenic not near genes chr2R 8314670 intergenic not near genes chr2R_4_8310001 chr2R_8310001 RAL-843 964 chr2R 8330818 8330885 chr2R 8331350 8331421 roo 24 535 10.5 9.0 9.8 2.2 603 chr2R 8330818 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331421 intron pdm3 + chr2R_24_8330001 chr2R_8330001 RAL-843 965 chr2R 8368146 8368218 chr2R 8368276 8368326 33 125 6.5 6.0 6.2 4.6 180 chr2R 8368146 intron pdm3 + chr2R 8368236 intron pdm3 + chr2R 8368326 intron pdm3 + chr2R_33_8365001 chr2R_8365001 RAL-843 966 chr2R 8379113 8379147 chr2R 8379256 8379290 6 138 8.5 16.0 12.2 0.5 177 chr2R 8379113 intron pdm3 + chr2R 8379202 intron pdm3 + chr2R 8379290 intron pdm3 + chr2R_6_8375001 chr2R_8375001 RAL-843 967 chr2R 8398173 8398233 chr2R 8402999 8403063 Doc 24 4829 7.0 10.5 8.8 2.4 4890 chr2R 8398173 intron CG2121 - chr2R 8400618 intron CG2121 - chr2R 8403063 intron CG2121 - chr2R_24_8400001 chr2R_8400001 RAL-843 968 chr2R 8416267 8416295 chr2R 8417141 8417144 I-element 6 870 9.0 6.5 7.8 0.7 877 chr2R 8416267 intergenic not near genes chr2R 8416706 intergenic CG43296 - chr2R 8417144 intergenic CG43296 - chr2R_6_8415001 chr2R_8415001 RAL-843 969 chr2R 8483924 8483994 chr2R 8484050 8484078 8 116 6.0 9.0 7.5 0.9 154 chr2R 8483924 intron mtt - chr2R 8484001 intron mtt - chr2R 8484078 intron mtt - chr2R_8_8480001 chr2R_8480001 RAL-843 970 chr2R 8489684 8489747 chr2R 8489808 8489874 23 128 5.5 4.5 5.0 3.8 190 chr2R 8489684 intron mtt - chr2R 8489779 intron mtt - chr2R 8489874 intron mtt - chr2R_23_8485001 chr2R_8485001 RAL-843 971 chr2R 8565343 8565405 chr2R 8565462 8565534 13 124 9.0 6.0 7.5 1.5 191 chr2R 8565343 exon Cyp6a14 - chr2R 8565438 exon Cyp6a14 - chr2R 8565534 exon Cyp6a14 - chr2R_13_8565001 chr2R_8565001 RAL-843 972 chr2R 8565989 8566049 chr2R 8566991 8567050 1360 31 1000 17.5 12.0 14.8 2.0 1061 chr2R 8565989 5` UTR Cyp6a14 - chr2R 8566520 5` UTR Cyp6a14 - chr2R 8567050 5` UTR Cyp6a14 - chr2R_31_8565001 chr2R_8565001 RAL-843 973 chr2R 8635908 8635934 chr2R 8636036 8636062 5 128 0.5 16.5 8.5 0.5 154 chr2R 8635908 intergenic not near genes chr2R 8635985 intergenic not near genes chr2R 8636062 intergenic not near genes chr2R_5_8635001 chr2R_8635001 RAL-843 974 chr2R 8638734 8638740 chr2R 22259655 22259659 4 13620920 25.0 28.0 26.5 0.1 13620925 chr2R 8638734 intergenic not near genes chr2R 15449196 intron CG43729 + chr2R 22259659 intron dve + chr2R_4_15445001 chr2R_15445001 RAL-843 975 chr2R 8668996 8669069 chr2R 8669125 8669133 29 118 13.5 8.0 10.8 2.5 137 chr2R 8668996 intron Acsl + chr2R 8669064 intron Acsl + chr2R 8669133 intron Acsl + chr2R_29_8665001 chr2R_8665001 RAL-843 976 chr2R 8722718 8722789 chr2R 8723007 8723080 pogo 21 282 5.0 7.0 6.0 3.0 362 chr2R 8722718 intron CG14767 - chr2R 8722899 intron CG14767 - chr2R 8723080 intron CG14767 - chr2R_21_8720001 chr2R_8720001 RAL-843 977 chr2R 8777874 8777932 chr2R 8784115 8784173 diver 20 6241 7.5 6.0 6.8 2.6 6299 chr2R 8777874 intergenic not near genes chr2R 8781024 intergenic not near genes chr2R 8784173 intergenic not near genes chr2R_20_8780001 chr2R_8780001 RAL-843 978 chr2R 9055745 9055784 chr2R 9055875 9055914 11 128 16.0 5.5 10.8 0.9 169 chr2R 9055745 intron CG13743 - chr2R 9055830 intron CG13743 - chr2R 9055914 intron CG13743 - chr2R_11_9055001 chr2R_9055001 RAL-843 979 chr2R 9055785 9055812 chr2R 9055869 9055942 11 113 9.0 5.5 7.2 1.3 157 chr2R 9055785 intron CG13743 - chr2R 9055864 intron CG13743 - chr2R 9055942 intron CG13743 - chr2R_11_9055001 chr2R_9055001 RAL-843 980 chr2R 9079383 9079436 chr2R 9079539 9079567 29 155 4.0 11.5 7.8 3.3 184 chr2R 9079383 intron CG8083 + chr2R 9079475 intron CG8083 + chr2R 9079567 intron CG8083 + chr2R_29_9075001 chr2R_9075001 RAL-843 981 chr2R 9085843 9085912 chr2R 9086240 9086309 27 396 6.5 13.5 10.0 2.5 466 chr2R 9085843 exon CG13742 - chr2R 9086076 exon CG13742 - chr2R 9086309 exon CG13742 - chr2R_27_9085001 chr2R_9085001 RAL-843 982 chr2R 9151257 9151323 chr2R 9157777 9157843 Burdock 34 6518 10.0 13.5 11.8 2.7 6586 chr2R 9151257 exon CG30345 + chr2R 9154550 intergenic not near genes chr2R 9157843 intergenic CG8008 - chr2R_34_9150001 chr2R_9150001 RAL-843 983 chr2R 9212661 9212699 chr2R 9213188 9213224 roo 16 534 10.0 8.0 9.0 1.6 563 chr2R 9212661 intergenic CR45309 + chr2R 9212942 intergenic CR45309 + chr2R 9213224 5` UTR CR45309 + chr2R_16_9210001 chr2R_9210001 RAL-843 984 chr2R 9258378 9258423 chr2R 9258518 9258563 17 140 12.0 7.5 9.8 1.6 185 chr2R 9258378 intron Pkn - chr2R 9258470 intron Pkn - chr2R 9258563 intron Pkn - chr2R_17_9255001 chr2R_9255001 RAL-843 985 chr2R 9368083 9368141 chr2R 9368207 9368235 13 115 7.0 1.0 4.0 2.6 152 chr2R 9368083 intron CG13954 - chr2R 9368159 intron CG13954 - chr2R 9368235 intron CG13954 - chr2R_13_9365001 chr2R_9365001 RAL-843 986 chr2R 9388614 9388644 chr2R 9388751 9388781 18 136 14.0 10.5 12.2 1.4 167 chr2R 9388614 5` UTR CG13954 - chr2R 9388698 5` UTR CG13954 - chr2R 9388781 5` UTR CG13954 - chr2R_18_9385001 chr2R_9385001 RAL-843 987 chr2R 9388647 9388673 chr2R 9388745 9388810 14 134 6.5 9.5 8.0 1.6 163 chr2R 9388647 5` UTR CG13954 - chr2R 9388728 5` UTR CG13954 - chr2R 9388810 5` UTR CG13954 - chr2R_14_9385001 chr2R_9385001 RAL-843 988 chr2R 9480039 9480075 chr2R 9490620 9490656 roo 17 10581 13.5 5.0 9.2 1.7 10617 chr2R 9480039 intergenic not near genes chr2R 9485348 intergenic not near genes chr2R 9490656 intergenic not near genes chr2R_17_9485001 chr2R_9485001 RAL-843 989 chr2R 9509394 9509447 chr2R 9509523 9509581 12 125 6.5 11.0 8.8 1.2 187 chr2R 9509394 intron brp + chr2R 9509488 intron brp + chr2R 9509581 intron brp + chr2R_12_9505001 chr2R_9505001 RAL-843 990 chr2R 9541574 9541652 chr2R 9541701 9541779 19 126 4.5 5.0 4.8 3.3 205 chr2R 9541574 intergenic brp +,CG1888 - chr2R 9541676 intergenic brp +,CG1888 - chr2R 9541779 intergenic CG1888 -,brp + chr2R_19_9540001 chr2R_9540001 RAL-843 991 chr2R 9561795 9561831 chr2R 9561932 9561969 14 138 6.5 10.0 8.2 1.5 174 chr2R 9561795 3` UTR,intron CR45281 -,CG1809 + chr2R 9561882 3` UTR,intron CR45281 -,CG1809 + chr2R 9561969 3` UTR,intron CR45281 -,CG1809 + chr2R_14_9560001 chr2R_9560001 RAL-843 992 chr2R 9616589 9616646 chr2R 9616744 9616801 23 152 12.5 8.5 10.5 2.0 212 chr2R 9616589 intron Mmp2 - chr2R 9616695 intron Mmp2 - chr2R 9616801 intron Mmp2 - chr2R_23_9615001 chr2R_9615001 RAL-843 993 chr2R 9672003 9672081 chr2R 9672159 9672235 23 156 4.5 7.0 5.8 3.4 232 chr2R 9672003 intron Mmp2 - chr2R 9672119 intron Mmp2 - chr2R 9672235 intron Mmp2 - chr2R_23_9670001 chr2R_9670001 RAL-843 994 chr2R 9726572 9726637 chr2R 9734171 9734238 17.6 29 7601 9.5 7.0 8.2 3.2 7666 chr2R 9726572 intron sqa - chr2R 9730405 intron sqa - chr2R 9734238 intron sqa - chr2R_29_9730001 chr2R_9730001 RAL-843 995 chr2R 9822194 9822264 chr2R 9822328 9822375 33 130 8.5 9.5 9.0 3.3 181 chr2R 9822194 exon CG30001 - chr2R 9822284 intron CG30001 - chr2R 9822375 exon CG30001 - chr2R_33_9820001 chr2R_9820001 RAL-843 996 chr2R 9871001 9871069 chr2R 9871536 9871570 roo 29 530 7.0 7.5 7.2 3.5 569 chr2R 9871001 intron cbx - chr2R 9871286 intron cbx - chr2R 9871570 intron,5` UTR cbx -,CG18446 + chr2R_29_9870001 chr2R_9870001 RAL-843 997 chr2R 9904730 9904809 chr2R 9904913 9904992 18 183 3.0 4.0 3.5 4.0 262 chr2R 9904730 intergenic not near genes chr2R 9904861 intergenic not near genes chr2R 9904992 intergenic not near genes chr2R_18_9900001 chr2R_9900001 RAL-843 998 chr2R 9940709 9940771 chr2R 9940841 9940886 23 129 13.5 15.5 14.5 1.5 177 chr2R 9940709 intron Mef2 - chr2R 9940798 5` UTR Mef2 - chr2R 9940886 5` UTR Mef2 - chr2R_23_9940001 chr2R_9940001 RAL-843 999 chr2R 9945393 9945454 chr2R 9945639 9945700 BS 23 243 9.5 9.0 9.2 2.3 307 chr2R 9945393 intron Mef2 - chr2R 9945546 intron Mef2 - chr2R 9945700 intron Mef2 - chr2R_23_9945001 chr2R_9945001 RAL-843 1000 chr2R 9975888 9975941 chr2R 9976041 9976088 11 158 8.0 5.0 6.5 1.5 200 chr2R 9975888 intergenic not near genes chr2R 9975988 intergenic not near genes chr2R 9976088 intergenic not near genes chr2R_11_9975001 chr2R_9975001 RAL-843 1001 chr2R 10005806 10005878 chr2R 10007021 10007083 1360 34 1205 14.0 10.5 12.2 2.6 1277 chr2R 10005806 intron Pka-R2 - chr2R 10006444 intron Pka-R2 - chr2R 10007083 intron Pka-R2 - chr2R_34_10005001 chr2R_10005001 RAL-843 1002 chr2R 10023112 10023144 chr2R 10023244 10023276 13 132 12.5 7.5 10.0 1.2 164 chr2R 10023112 intron Pka-R2 - chr2R 10023194 intron Pka-R2 - chr2R 10023276 intron Pka-R2 - chr2R_13_10020001 chr2R_10020001 RAL-843 1003 chr2R 10023148 10023184 chr2R 10023243 10023316 17 130 9.0 8.0 8.5 1.8 168 chr2R 10023148 intron Pka-R2 - chr2R 10023232 intron Pka-R2 - chr2R 10023316 intron Pka-R2 - chr2R_17_10020001 chr2R_10020001 RAL-843 1004 chr2R 10086871 10086934 chr2R 10087018 10087081 20 143 11.0 8.0 9.5 1.9 210 chr2R 10086871 intron,exon CG2269 +,sut4 - chr2R 10086976 intron,5` UTR CG2269 +,sut4 - chr2R 10087081 intron,5` UTR CG2269 +,sut4 - chr2R_20_10085001 chr2R_10085001 RAL-843 1005 chr2R 10147599 10147658 chr2R 10147732 10147791 19 132 10.5 4.5 7.5 2.2 192 chr2R 10147599 intron KCNQ - chr2R 10147695 intron KCNQ - chr2R 10147791 intron KCNQ - chr2R_19_10145001 chr2R_10145001 RAL-843 1006 chr2R 10168305 10168361 chr2R 10168432 10168469 12 125 6.5 12.5 9.5 1.1 164 chr2R 10168305 intron KCNQ - chr2R 10168387 intron KCNQ - chr2R 10168469 intron KCNQ - chr2R_12_10165001 chr2R_10165001 RAL-843 1007 chr2R 10176838 10176904 chr2R 10186055 10186121 roo 27 9217 9.5 10.5 10.0 2.5 9283 chr2R 10176838 intron KCNQ - chr2R 10181480 intron KCNQ - chr2R 10186121 intron KCNQ - chr2R_27_10180001 chr2R_10180001 RAL-843 1008 chr2R 10266488 10266528 chr2R 10266587 10266610 17 116 9.5 6.5 8.0 1.9 122 chr2R 10266488 intron CG12910 + chr2R 10266549 intron CG12910 + chr2R 10266610 intron CG12910 + chr2R_17_10265001 chr2R_10265001 RAL-843 1009 chr2R 10274774 10274806 chr2R 10274900 10274932 11 126 18.0 0.5 9.2 1.1 158 chr2R 10274774 intron CAP + chr2R 10274853 intron CAP + chr2R 10274932 intron CAP + chr2R_11_10270001 chr2R_10270001 RAL-843 1010 chr2R 10290079 10290137 chr2R 10290200 10290268 18 130 12.0 2.5 7.2 2.2 189 chr2R 10290079 intron CAP + chr2R 10290174 intron CAP + chr2R 10290268 intron CAP + chr2R_18_10290001 chr2R_10290001 RAL-843 1011 chr2R 10291819 10291854 chr2R 10291956 10291991 6 137 0.0 12.0 6.0 0.9 172 chr2R 10291819 intron CAP + chr2R 10291905 intron CAP + chr2R 10291991 intron CAP + chr2R_6_10290001 chr2R_10290001 RAL-843 1012 chr2R 10322055 10322081 chr2R 10322187 10322213 6 132 8.0 15.5 11.8 0.5 158 chr2R 10322055 3` UTR Ndg + chr2R 10322134 intergenic Ndg + chr2R 10322213 intergenic Ndg + chr2R_6_10320001 chr2R_10320001 RAL-843 1013 chr2R 10409010 10409085 chr2R 10409137 10409211 31 125 0.0 9.0 4.5 5.6 201 chr2R 10409010 intron CG42732 - chr2R 10409110 intron CG42732 - chr2R 10409211 intron,exon CG42732 -,CG33477 - chr2R_31_10405001 chr2R_10405001 RAL-843 1014 chr2R 10428973 10429046 chr2R 10429100 10429155 38 122 6.5 3.0 4.8 6.6 182 chr2R 10428973 intergenic not near genes chr2R 10429064 intergenic not near genes chr2R 10429155 intergenic not near genes chr2R_38_10425001 chr2R_10425001 RAL-843 1015 chr2R 10509545 10509559 chr2R 10509682 10509696 4 137 15.5 6.0 10.8 0.3 151 chr2R 10509545 intron lola - chr2R 10509620 intron lola - chr2R 10509696 intron lola - chr2R_4_10505001 chr2R_10505001 RAL-843 1016 chr2R 10562142 10562199 chr2R 10562280 10562337 27 136 9.5 6.5 8.0 3.0 195 chr2R 10562142 exon psq + chr2R 10562240 intron psq + chr2R 10562337 intron psq + chr2R_27_10560001 chr2R_10560001 RAL-843 1017 chr2R 10563228 10563265 chr2R 10563376 10563393 8 145 0.0 13.5 6.8 1.0 165 chr2R 10563228 intron psq + chr2R 10563310 intron psq + chr2R 10563393 intron psq + chr2R_8_10560001 chr2R_10560001 RAL-843 1018 chr2R 10585513 10585586 chr2R 10594146 10594191 Tirant 5 8605 8.0 9.5 8.8 0.5 8678 chr2R 10585513 intron psq + chr2R 10589852 intron psq + chr2R 10594191 intron psq + chr2R_5_10585001 chr2R_10585001 RAL-843 1019 chr2R 10622308 10622386 chr2R 10637124 10637313 10 14826 5.5 0.0 2.8 2.6 15005 chr2R 10622308 intron CG11883 + chr2R 10629810 intron CG11883 + chr2R 10637313 intron CG11883 + chr2R_10_10625001 chr2R_10625001 RAL-843 1020 chr2R 10637130 10637142 chr2R 10637345 10637357 6 215 0.0 9.5 4.8 1.0 227 chr2R 10637130 intron CG11883 + chr2R 10637244 intron CG11883 + chr2R 10637357 intron CG11883 + chr2R_6_10635001 chr2R_10635001 RAL-843 1021 chr2R 10644011 10644061 chr2R 10644139 10644189 24 128 21.5 1.5 11.5 1.9 178 chr2R 10644011 intron Git - chr2R 10644100 intron Git - chr2R 10644189 intron Git - chr2R_24_10640001 chr2R_10640001 RAL-843 1022 chr2R 10659006 10659050 chr2R 10666671 10666715 mdg1 23 7665 0.0 6.0 3.0 5.8 7709 chr2R 10659006 intergenic not near genes chr2R 10662860 intergenic not near genes chr2R 10666715 intergenic not near genes chr2R_23_10660001 chr2R_10660001 RAL-843 1023 chr2R 10768106 10768165 chr2R 10768237 10768275 27 128 0.5 12.0 6.2 3.8 169 chr2R 10768106 intron CG33144 - chr2R 10768190 intron CG33144 - chr2R 10768275 intron CG33144 - chr2R_27_10765001 chr2R_10765001 RAL-843 1024 chr2R 10770959 10771022 chr2R 10771089 10771153 20 131 10.0 6.5 8.2 2.2 194 chr2R 10770959 intron CG33144 - chr2R 10771056 intron CG33144 - chr2R 10771153 intron CG33144 - chr2R_20_10770001 chr2R_10770001 RAL-843 1025 chr2R 10779232 10779288 chr2R 10779358 10779414 16 126 7.5 6.5 7.0 2.0 182 chr2R 10779232 intron CG33144 - chr2R 10779323 intron CG33144 - chr2R 10779414 intron CG33144 - chr2R_16_10775001 chr2R_10775001 RAL-843 1026 chr2R 10790103 10790167 chr2R 10790241 10790305 22 136 9.0 11.5 10.2 2.0 202 chr2R 10790103 intron CG33144 - chr2R 10790204 intron CG33144 - chr2R 10790305 intron CG33144 - chr2R_22_10790001 chr2R_10790001 RAL-843 1027 chr2R 10794872 10794934 chr2R 10795000 10795062 13 128 6.5 7.5 7.0 1.6 190 chr2R 10794872 intron CG33144 - chr2R 10794967 intron CG33144 - chr2R 10795062 intron CG33144 - chr2R_13_10790001 chr2R_10790001 RAL-843 1028 chr2R 10796661 10796737 chr2R 10796805 10796886 30 145 8.5 4.0 6.2 4.2 225 chr2R 10796661 intron CG33144 - chr2R 10796774 intron CG33144 - chr2R 10796886 intron CG33144 - chr2R_30_10795001 chr2R_10795001 RAL-843 1029 chr2R 10848272 10848284 chr2R 10848425 10848437 8 153 7.0 6.5 6.8 1.0 165 chr2R 10848272 intron CG30015 - chr2R 10848354 intron CG30015 - chr2R 10848437 intron CG30015 - chr2R_8_10845001 chr2R_10845001 RAL-843 1030 chr2R 10851168 10851212 chr2R 10851303 10851347 11 135 7.0 13.0 10.0 1.0 179 chr2R 10851168 intron CG30015 - chr2R 10851258 intron CG30015 - chr2R 10851347 intron CG30015 - chr2R_11_10850001 chr2R_10850001 RAL-843 1031 chr2R 10860450 10860513 chr2R 10860582 10860645 24 132 3.0 11.5 7.2 2.9 195 chr2R 10860450 intron CG30015 - chr2R 10860548 intron CG30015 - chr2R 10860645 intron CG30015 - chr2R_24_10860001 chr2R_10860001 RAL-843 1032 chr2R 10873298 10873376 chr2R 10873435 10873513 19 137 3.5 5.0 4.2 3.7 215 chr2R 10873298 intron CG30015 - chr2R 10873406 intron CG30015 - chr2R 10873513 intron CG30015 - chr2R_19_10870001 chr2R_10870001 RAL-843 1033 chr2R 10948028 10948051 chr2R 10955583 10955652 17.6 7 7588 6.0 6.0 6.0 1.0 7624 chr2R 10948028 intergenic not near genes chr2R 10951840 intergenic not near genes chr2R 10955652 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-843 1034 chr2R 10959040 10959100 chr2R 10959169 10959206 18 127 2.5 3.0 2.8 4.7 166 chr2R 10959040 intergenic not near genes chr2R 10959123 intergenic not near genes chr2R 10959206 intergenic not near genes chr2R_18_10955001 chr2R_10955001 RAL-843 1035 chr2R 10976309 10976375 chr2R 10976442 10976508 18 133 6.5 4.0 5.2 2.9 199 chr2R 10976309 intergenic not near genes chr2R 10976408 intergenic not near genes chr2R 10976508 intergenic not near genes chr2R_18_10975001 chr2R_10975001 RAL-843 1036 chr2R 10979608 10979673 chr2R 10980131 10980193 297 14 520 3.0 4.0 3.5 3.1 585 chr2R 10979608 intergenic not near genes chr2R 10979900 intergenic not near genes chr2R 10980193 intergenic not near genes chr2R_14_10975001 chr2R_10975001 RAL-843 1037 chr2R 10992898 10992979 chr2R 10993034 10993101 33 131 9.5 8.0 8.8 3.4 203 chr2R 10992898 intron luna - chr2R 10993000 intron luna - chr2R 10993101 intron luna - chr2R_33_10990001 chr2R_10990001 RAL-843 1038 chr2R 11009776 11009846 chr2R 11019000 11019040 roo 35 9217 5.0 10.5 7.8 4.0 9264 chr2R 11009776 intron luna - chr2R 11014408 intron luna - chr2R 11019040 intron luna - chr2R_35_11010001 chr2R_11010001 RAL-843 1039 chr2R 11019837 11019900 chr2R 11024953 11025011 jockey 18 5108 5.0 10.5 7.8 2.0 5174 chr2R 11019837 intron luna - chr2R 11022424 intron luna - chr2R 11025011 intron luna - chr2R_18_11020001 chr2R_11020001 RAL-843 1040 chr2R 11071513 11071589 chr2R 11071668 11071669 24 150 9.5 0.5 5.0 4.0 156 chr2R 11071513 intron luna - chr2R 11071591 intron luna - chr2R 11071669 intron luna - chr2R_24_11070001 chr2R_11070001 RAL-843 1041 chr2R 11081053 11081076 chr2R 11081154 11081164 10 103 3.5 13.0 8.2 1.1 111 chr2R 11081053 intron luna - chr2R 11081108 intron luna - chr2R 11081164 intron luna - chr2R_10_11080001 chr2R_11080001 RAL-843 1042 chr2R 11161611 11161655 chr2R 11161801 11161845 14 190 5.0 6.0 5.5 2.2 234 chr2R 11161611 intron,intron CG13229 -,shn + chr2R 11161728 intron,intron CG13229 -,shn + chr2R 11161845 intron,intron CG13229 -,shn + chr2R_14_11160001 chr2R_11160001 RAL-843 1043 chr2R 11176086 11176158 chr2R 11176364 11176436 22 278 7.0 5.5 6.2 3.1 350 chr2R 11176086 intron shn + chr2R 11176261 intron shn + chr2R 11176436 intron shn + chr2R_22_11175001 chr2R_11175001 RAL-843 1044 chr2R 11207782 11207823 chr2R 11208025 11208064 BS 25 242 14.0 16.5 15.2 1.5 282 chr2R 11207782 intron shn + chr2R 11207923 intron shn + chr2R 11208064 intron shn + chr2R_25_11205001 chr2R_11205001 RAL-843 1045 chr2R 11207828 11207837 chr2R 11208021 11208080 BS 6 235 9.5 15.5 12.5 0.4 252 chr2R 11207828 intron shn + chr2R 11207954 intron shn + chr2R 11208080 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-843 1046 chr2R 11265679 11265709 chr2R 11265806 11265823 8 128 13.5 0.0 6.8 1.0 144 chr2R 11265679 exon Cpr47Ee + chr2R 11265751 exon Cpr47Ee + chr2R 11265823 intron Cpr47Ee + chr2R_8_11265001 chr2R_11265001 RAL-843 1047 chr2R 11297591 11297635 chr2R 11301965 11302009 flea 23 4373 9.0 2.0 5.5 3.5 4418 chr2R 11297591 intergenic CG42336 - chr2R 11299800 intergenic not near genes chr2R 11302009 5` UTR CG7741 + chr2R_23_11295001 chr2R_11295001 RAL-843 1048 chr2R 11344101 11344159 chr2R 11344247 11344305 15 145 0.0 10.0 5.0 2.5 204 chr2R 11344101 intergenic alphaTry - chr2R 11344203 intergenic alphaTry - chr2R 11344305 3` UTR alphaTry - chr2R_15_11340001 chr2R_11340001 RAL-843 1049 chr2R 11367994 11368056 chr2R 11368120 11368182 11 125 4.5 11.5 8.0 1.2 188 chr2R 11367994 intron CG13204 + chr2R 11368088 intron CG13204 + chr2R 11368182 intron CG13204 + chr2R_11_11365001 chr2R_11365001 RAL-843 1050 chr2R 11415476 11415507 chr2R 11418675 11418691 opus 14 3197 15.5 10.0 12.8 1.0 3215 chr2R 11415476 intron Drip - chr2R 11417084 intron Drip - chr2R 11418691 intron Drip - chr2R_14_11415001 chr2R_11415001 RAL-843 1051 chr2R 11415510 11415549 chr2R 11418672 11418738 opus 20 3192 8.5 10.0 9.2 2.0 3228 chr2R 11415510 intron Drip - chr2R 11417124 intron Drip - chr2R 11418738 intron Drip - chr2R_20_11415001 chr2R_11415001 RAL-843 1052 chr2R 11435977 11436027 chr2R 11436138 11436188 24 160 14.5 12.5 13.5 1.7 211 chr2R 11435977 intergenic CG7777 + chr2R 11436082 intergenic CG7777 + chr2R 11436188 intergenic CG7777 + chr2R_24_11435001 chr2R_11435001 RAL-843 1053 chr2R 11472607 11472646 chr2R 11473854 11473893 pogo 20 1246 19.0 10.5 14.8 1.3 1286 chr2R 11472607 intergenic not near genes chr2R 11473250 intergenic not near genes chr2R 11473893 intergenic not near genes chr2R_20_11470001 chr2R_11470001 RAL-843 1054 chr2R 11472655 11472674 chr2R 11473845 11473921 pogo 23 1243 12.0 9.5 10.8 1.9 1266 chr2R 11472655 intergenic not near genes chr2R 11473288 intergenic not near genes chr2R 11473921 intergenic not near genes chr2R_23_11470001 chr2R_11470001 RAL-843 1055 chr2R 11568646 11568725 chr2R 11568806 11568885 23 160 5.5 5.0 5.2 3.7 239 chr2R 11568646 intergenic not near genes chr2R 11568766 intergenic not near genes chr2R 11568885 intergenic not near genes chr2R_23_11565001 chr2R_11565001 RAL-843 1056 chr2R 11575002 11575036 chr2R 11575151 11575180 19 149 9.0 0.0 4.5 3.5 178 chr2R 11575002 intergenic not near genes chr2R 11575091 intergenic not near genes chr2R 11575180 intergenic not near genes chr2R_19_11575001 chr2R_11575001 RAL-843 1057 chr2R 11637283 11637324 chr2R 11637411 11637438 14 126 15.0 5.0 10.0 1.3 155 chr2R 11637283 intron CG9005 - chr2R 11637360 intron CG9005 - chr2R 11637438 intron CG9005 - chr2R_14_11635001 chr2R_11635001 RAL-843 1058 chr2R 11656953 11656991 chr2R 11657088 11657126 11 135 8.0 0.5 4.2 2.1 173 chr2R 11656953 intron Roc2 - chr2R 11657040 intron Roc2 - chr2R 11657126 intron Roc2 - chr2R_11_11655001 chr2R_11655001 RAL-843 1059 chr2R 11677806 11677881 chr2R 11677965 11678043 24 159 9.5 7.0 8.2 2.6 237 chr2R 11677806 intron,exon Roc2 -,Tret1-2 + chr2R 11677924 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11678043 intron Roc2 - chr2R_24_11675001 chr2R_11675001 RAL-843 1060 chr2R 11724113 11724178 chr2R 11724246 11724311 24 133 9.0 4.5 6.8 3.1 198 chr2R 11724113 intron pyr + chr2R 11724212 intron pyr + chr2R 11724311 exon pyr + chr2R_24_11720001 chr2R_11720001 RAL-843 1061 chr2R 11822928 11822986 chr2R 11823055 11823112 8 127 0.0 0.0 0.0 8.0 184 chr2R 11822928 intergenic not near genes chr2R 11823020 intergenic not near genes chr2R 11823112 intergenic not near genes chr2R_8_11820001 chr2R_11820001 RAL-843 1062 chr2R 11970784 11970853 chr2R 11970918 11970960 21 130 6.5 6.5 6.5 2.8 176 chr2R 11970784 5` UTR CG8290 + chr2R 11970872 5` UTR CG8290 + chr2R 11970960 5` UTR CG8290 + chr2R_21_11970001 chr2R_11970001 RAL-843 1063 chr2R 11994907 11994976 chr2R 11995047 11995116 30 140 4.5 4.0 4.2 5.8 209 chr2R 11994907 3` UTR CR45319 - chr2R 11995012 3` UTR,5` UTR CR45319 -,CR45318 + chr2R 11995116 3` UTR,5` UTR CR45319 -,CR45318 + chr2R_30_11995001 chr2R_11995001 RAL-843 1064 chr2R 12028396 12028424 chr2R 12028524 12028532 9 122 19.5 9.0 14.2 0.6 136 chr2R 12028396 5` UTR pds5 + chr2R 12028464 5` UTR pds5 + chr2R 12028532 5` UTR pds5 + chr2R_9_12025001 chr2R_12025001 RAL-843 1065 chr2R 12028426 12028465 chr2R 12028519 12028548 17 100 10.5 8.0 9.2 1.7 122 chr2R 12028426 5` UTR pds5 + chr2R 12028487 5` UTR pds5 + chr2R 12028548 5` UTR pds5 + chr2R_17_12025001 chr2R_12025001 RAL-843 1066 chr2R 12061065 12061144 chr2R 12061201 12061280 24 136 5.5 6.0 5.8 3.5 215 chr2R 12061065 intron Drep-3 + chr2R 12061172 intron Drep-3 + chr2R 12061280 intron Drep-3 + chr2R_24_12060001 chr2R_12060001 RAL-843 1067 chr2R 8518787 8518801 chr2R 12066132 12066175 12 3547355 8.0 23.5 15.8 0.7 3547388 chr2R 8518787 intron mtt - chr2R 10292481 intron CAP + chr2R 12066175 intron CG8888 - chr2R_12_10290001 chr2R_10290001 RAL-843 1068 chr2R 12093913 12093981 chr2R 12094076 12094145 8 163 7.0 5.5 6.2 1.1 232 chr2R 12093913 intron jeb - chr2R 12094029 intron jeb - chr2R 12094145 intron jeb - chr2R_8_12090001 chr2R_12090001 RAL-843 1069 chr2R 12100613 12100630 chr2R 12101153 12101173 10 544 17.5 14.5 16.0 0.6 560 chr2R 12100613 intron jeb - chr2R 12100893 intron jeb - chr2R 12101173 intron jeb - chr2R_10_12100001 chr2R_12100001 RAL-843 1070 chr2R 12104640 12104702 chr2R 12104768 12104802 36 124 11.5 14.5 13.0 2.6 162 chr2R 12104640 intron jeb - chr2R 12104721 intron jeb - chr2R 12104802 intron jeb - chr2R_36_12100001 chr2R_12100001 RAL-843 1071 chr2R 12110195 12110255 chr2R 12110323 12110360 26 127 8.0 6.5 7.2 3.2 165 chr2R 12110195 intron jeb - chr2R 12110278 intron jeb - chr2R 12110360 intron jeb - chr2R_26_12110001 chr2R_12110001 RAL-843 1072 chr2R 12236161 12236230 chr2R 12236318 12236387 15 155 4.0 5.5 4.8 2.6 226 chr2R 12236161 intergenic not near genes chr2R 12236274 intergenic not near genes chr2R 12236387 intergenic not near genes chr2R_15_12235001 chr2R_12235001 RAL-843 1073 chr2R 12240756 12240771 chr2R 12240842 12240906 4 123 11.0 0.0 5.5 0.6 150 chr2R 12240756 exon CG13170 + chr2R 12240831 intergenic CG13170 +,CG43315 + chr2R 12240906 intergenic CG13170 +,CG43315 + chr2R_4_12240001 chr2R_12240001 RAL-843 1074 chr2R 12244962 12244971 chr2R 12245091 12245100 4 129 0.0 0.0 0.0 4.0 138 chr2R 12244962 intergenic CG43244 - chr2R 12245031 intergenic CG43244 - chr2R 12245100 intergenic CG43244 - chr2R_4_12245001 chr2R_12245001 RAL-843 1075 chr2R 12255680 12255748 chr2R 12255849 12255917 29 169 3.5 9.5 6.5 3.9 237 chr2R 12255680 3` UTR CG13168 + chr2R 12255798 intergenic CG13168 + chr2R 12255917 intergenic CG13168 + chr2R_29_12255001 chr2R_12255001 RAL-843 1076 chr2R 12269735 12269771 chr2R 12269871 12269907 18 135 4.5 15.5 10.0 1.6 172 chr2R 12269735 intron Cam + chr2R 12269821 intron Cam + chr2R 12269907 intron Cam + chr2R_18_12265001 chr2R_12265001 RAL-843 1077 chr2R 12293863 12293925 chr2R 12294006 12294068 11 140 6.5 3.0 4.8 1.9 205 chr2R 12293863 intron CG42700 + chr2R 12293966 intron CG42700 + chr2R 12294068 intron CG42700 + chr2R_11_12290001 chr2R_12290001 RAL-843 1078 chr2R 12481138 12481141 chr2R 12482972 12482995 roo 5 1845 10.5 12.5 11.5 0.4 1857 chr2R 12481138 exon Dh44-R2 + chr2R 12482066 intron Dh44-R2 + chr2R 12482995 intron Dh44-R2 + chr2R_5_12480001 chr2R_12480001 RAL-843 1079 chr2R 12481146 12481162 chr2R 12482961 12482986 roo 13 1836 6.0 12.0 9.0 1.3 1840 chr2R 12481146 exon Dh44-R2 + chr2R 12482066 intron Dh44-R2 + chr2R 12482986 intron Dh44-R2 + chr2R_13_12480001 chr2R_12480001 RAL-843 1080 chr2R 12501658 12501719 chr2R 12503863 12503913 Rt1c 18 2191 9.0 17.5 13.2 1.3 2255 chr2R 12501658 intron fdl - chr2R 12502786 intron fdl - chr2R 12503913 intron fdl - chr2R_18_12500001 chr2R_12500001 RAL-843 1081 chr2R 12565515 12565597 chr2R 12565945 12565996 15 401 0.0 8.5 4.2 2.9 481 chr2R 12565515 intergenic not near genes chr2R 12565756 intergenic Cyp301a1 + chr2R 12565996 intergenic Cyp301a1 + chr2R_15_12565001 chr2R_12565001 RAL-843 1082 chr2R 12625475 12625538 chr2R 12625603 12625666 13 128 2.0 5.5 3.8 2.7 191 chr2R 12625475 intergenic CG30054 +,CG17760 + chr2R 12625570 intergenic CG30054 +,CG17760 + chr2R 12625666 intergenic CG17760 +,CG30054 + chr2R_13_12625001 chr2R_12625001 RAL-843 1083 chr2R 12627426 12627502 chr2R 12627579 12627645 23 150 0.0 9.5 4.8 4.0 219 chr2R 12627426 intron CG17760 + chr2R 12627536 intron CG17760 + chr2R 12627645 exon CG17760 + chr2R_23_12625001 chr2R_12625001 RAL-843 1084 chr2R 12707476 12707511 chr2R 12715892 12715927 roo 8 8416 12.5 0.0 6.2 1.1 8451 chr2R 12707476 intron CG42663 + chr2R 12711702 intron CG42663 + chr2R 12715927 intron CG42663 + chr2R_8_12710001 chr2R_12710001 RAL-843 1085 chr2R 12728857 12728906 chr2R 12729009 12729054 11 149 0.0 14.5 7.2 1.3 197 chr2R 12728857 intron CG42663 + chr2R 12728956 intron CG42663 + chr2R 12729054 intron CG42663 + chr2R_11_12725001 chr2R_12725001 RAL-843 1086 chr2R 12777763 12777822 chr2R 12777915 12777981 14 156 4.0 9.0 6.5 1.9 218 chr2R 12777763 5` UTR CR45266 + chr2R 12777872 5` UTR CR45266 + chr2R 12777981 5` UTR CR45266 + chr2R_14_12775001 chr2R_12775001 RAL-843 1087 chr2R 12789250 12789305 chr2R 12797663 12797718 roo 22 8409 5.5 7.0 6.2 3.1 8468 chr2R 12789250 intron,3` UTR sca +,CR45137 - chr2R 12793484 intron,intron sca +,CR45137 - chr2R 12797718 intron,3` UTR sca +,CR45137 - chr2R_22_12790001 chr2R_12790001 RAL-843 1088 chr2R 12789306 12789320 chr2R 12797656 12797688 roo 7 8381 4.0 6.5 5.2 1.1 8382 chr2R 12789306 intron,3` UTR sca +,CR45137 - chr2R 12793497 intron,intron sca +,CR45137 - chr2R 12797688 intron,3` UTR sca +,CR45137 - chr2R_7_12790001 chr2R_12790001 RAL-843 1089 chr2R 12813373 12813450 chr2R 12813512 12813539 24 132 3.5 1.0 2.2 7.5 166 chr2R 12813373 intergenic not near genes chr2R 12813456 intergenic not near genes chr2R 12813539 intergenic not near genes chr2R_24_12810001 chr2R_12810001 RAL-843 1090 chr2R 12819423 12819478 chr2R 12824538 12824579 jockey 15 5114 7.0 12.5 9.8 1.4 5156 chr2R 12819423 intergenic not near genes chr2R 12822001 intergenic not near genes chr2R 12824579 intergenic not near genes chr2R_15_12820001 chr2R_12820001 RAL-843 1091 chr2R 12845366 12845441 chr2R 12845496 12845568 24 126 8.0 1.5 4.8 4.1 202 chr2R 12845366 intergenic CG17575 - chr2R 12845467 intergenic CG17575 - chr2R 12845568 3` UTR CG17575 - chr2R_24_12845001 chr2R_12845001 RAL-843 1092 chr2R 12897414 12897486 chr2R 12897555 12897627 33 141 8.0 3.0 5.5 5.1 213 chr2R 12897414 intron vg + chr2R 12897520 intron vg + chr2R 12897627 intron vg + chr2R_33_12895001 chr2R_12895001 RAL-843 1093 chr2R 12915778 12915818 chr2R 12915923 12915953 11 142 7.0 8.5 7.8 1.2 175 chr2R 12915778 intergenic NAT1 + chr2R 12915866 intergenic NAT1 + chr2R 12915953 intergenic NAT1 + chr2R_11_12915001 chr2R_12915001 RAL-843 1094 chr2R 12915821 12915843 chr2R 12915917 12915977 15 129 3.0 7.5 5.2 2.4 156 chr2R 12915821 intergenic NAT1 + chr2R 12915899 intergenic NAT1 + chr2R 12915977 intergenic NAT1 + chr2R_15_12915001 chr2R_12915001 RAL-843 1095 chr2R 12952815 12952849 chr2R 12952949 12952978 11 134 0.0 9.5 4.8 1.9 163 chr2R 12952815 intergenic CG13321 + chr2R 12952896 intergenic CG13321 + chr2R 12952978 intergenic CG13321 + chr2R_11_12950001 chr2R_12950001 RAL-843 1096 chr2R 13018085 13018161 chr2R 13018335 13018415 23 252 9.5 0.0 4.8 4.0 330 chr2R 13018085 intergenic not near genes chr2R 13018250 intergenic not near genes chr2R 13018415 intergenic not near genes chr2R_23_13015001 chr2R_13015001 RAL-843 1097 chr2R 13027696 13027727 chr2R 13027825 13027856 11 127 5.5 2.5 4.0 2.2 160 chr2R 13027696 intergenic not near genes chr2R 13027776 intergenic not near genes chr2R 13027856 intergenic not near genes chr2R_11_13025001 chr2R_13025001 RAL-843 1098 chr2R 13043020 13043038 chr2R 13043150 13043167 4 130 0.0 9.0 4.5 0.7 147 chr2R 13043020 intergenic not near genes chr2R 13043094 intergenic not near genes chr2R 13043167 intergenic not near genes chr2R_4_13040001 chr2R_13040001 RAL-843 1099 chr2R 13125654 13125704 chr2R 13125787 13125837 27 133 1.5 3.0 2.2 8.4 183 chr2R 13125654 exon CG13325 + chr2R 13125746 3` UTR CG13325 + chr2R 13125837 intergenic CG13325 + chr2R_27_13125001 chr2R_13125001 RAL-843 1100 chr2R 13136798 13136860 chr2R 13141645 13141707 Doc 26 4847 17.5 12.5 15.0 1.6 4909 chr2R 13136798 exon Cap-G + chr2R 13139252 intron Cap-G + chr2R 13141707 intron Cap-G + chr2R_26_13135001 chr2R_13135001 RAL-843 1101 chr2R 13172044 13172110 chr2R 13172172 13172238 13 127 6.5 4.0 5.2 2.1 194 chr2R 13172044 intron AGBE + chr2R 13172141 intron AGBE + chr2R 13172238 intron AGBE + chr2R_13_13170001 chr2R_13170001 RAL-843 1102 chr2R 13257219 13257294 chr2R 13257348 13257418 34 127 8.0 13.0 10.5 3.0 199 chr2R 13257219 exon CG4716 + chr2R 13257318 exon CG4716 + chr2R 13257418 3` UTR CG4716 + chr2R_34_13255001 chr2R_13255001 RAL-843 1103 chr2R 13348939 13349007 chr2R 13349070 13349153 14 134 4.0 0.0 2.0 4.7 214 chr2R 13348939 intron CR44206 - chr2R 13349046 intron CR44206 - chr2R 13349153 intron CR44206 - chr2R_14_13345001 chr2R_13345001 RAL-843 1104 chr2R 13369748 13369765 chr2R 13369873 13369891 10 126 0.0 18.0 9.0 1.0 143 chr2R 13369748 intergenic not near genes chr2R 13369820 intergenic not near genes chr2R 13369891 intergenic not near genes chr2R_10_13365001 chr2R_13365001 RAL-843 1105 chr2R 13403871 13403906 chr2R 13404006 13404041 18 135 12.0 0.0 6.0 2.6 170 chr2R 13403871 intergenic not near genes chr2R 13403956 intergenic not near genes chr2R 13404041 intergenic not near genes chr2R_18_13400001 chr2R_13400001 RAL-843 1106 chr2R 13403910 13403924 chr2R 13404029 13404059 8 133 8.0 0.0 4.0 1.6 149 chr2R 13403910 intergenic not near genes chr2R 13403984 intergenic not near genes chr2R 13404059 intergenic not near genes chr2R_8_13400001 chr2R_13400001 RAL-843 1107 chr2R 13431443 13431480 chr2R 13431572 13431609 14 129 14.0 1.5 7.8 1.6 166 chr2R 13431443 intron CG42321 - chr2R 13431526 intron CG42321 - chr2R 13431609 intron CG42321 - chr2R_14_13430001 chr2R_13430001 RAL-843 1108 chr2R 13438869 13438944 chr2R 13440137 13440212 26 1270 34.5 69.5 52.0 0.5 1343 chr2R 13438869 5` UTR CG42321 - chr2R 13439540 3` UTR cnn - chr2R 13440212 exon cnn - chr2R_26_13435001 chr2R_13435001 RAL-843 1109 chr2R 13468859 13468875 chr2R 13468962 13469003 7 123 14.0 9.5 11.8 0.5 144 chr2R 13468859 intron arr - chr2R 13468931 intron arr - chr2R 13469003 intron arr - chr2R_7_13465001 chr2R_13465001 RAL-843 1110 chr2R 13470866 13470936 chr2R 13470995 13471065 29 125 7.5 15.5 11.5 2.3 199 chr2R 13470866 intron arr - chr2R 13470966 intron arr - chr2R 13471065 intron arr - chr2R_29_13470001 chr2R_13470001 RAL-843 1111 chr2R 13554687 13554773 chr2R 13554829 13554908 14 135 0.0 8.5 4.2 2.7 221 chr2R 13554687 intron Roe1 + chr2R 13554798 intron Roe1 + chr2R 13554908 intron Roe1 + chr2R_14_13550001 chr2R_13550001 RAL-843 1112 chr2R 13568165 13568194 chr2R 13568296 13568325 13 131 8.5 10.0 9.2 1.3 160 chr2R 13568165 intergenic not near genes chr2R 13568245 intergenic not near genes chr2R 13568325 intergenic not near genes chr2R_13_13565001 chr2R_13565001 RAL-843 1113 chr2R 13574353 13574410 chr2R 13574484 13574541 18 130 9.5 5.5 7.5 2.1 188 chr2R 13574353 intergenic CG42808 - chr2R 13574447 intergenic CG42808 -,CR44365 + chr2R 13574541 intergenic CG42808 -,CR44365 + chr2R_18_13570001 chr2R_13570001 RAL-843 1114 chr2R 13574412 13574426 chr2R 13574483 13574557 11 126 7.5 6.5 7.0 1.4 145 chr2R 13574412 intergenic CG42808 -,CR44365 + chr2R 13574484 intergenic CG42808 -,CR44365 + chr2R 13574557 intergenic CG42808 -,CR44365 + chr2R_11_13570001 chr2R_13570001 RAL-843 1115 chr2R 13580468 13580527 chr2R 13580854 13580902 jockey 25 394 8.5 11.0 9.8 2.3 434 chr2R 13580468 3` UTR CG6191 - chr2R 13580685 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580902 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_25_13580001 chr2R_13580001 RAL-843 1116 chr2R 13601279 13601303 chr2R 13601610 13601658 7 338 11.0 8.0 9.5 0.7 379 chr2R 13601279 intergenic CG43058 - chr2R 13601468 intergenic CG43058 - chr2R 13601658 intergenic not near genes chr2R_7_13600001 chr2R_13600001 RAL-843 1117 chr2R 13601304 13601321 chr2R 13601609 13601666 5 326 5.0 8.0 6.5 0.7 362 chr2R 13601304 intergenic CG43058 - chr2R 13601485 intergenic CG43058 - chr2R 13601666 intergenic not near genes chr2R_5_13600001 chr2R_13600001 RAL-843 1118 chr2R 13652660 13652736 chr2R 13652787 13652865 30 122 5.5 8.5 7.0 3.8 205 chr2R 13652660 intron fas + chr2R 13652762 intron fas + chr2R 13652865 intron fas + chr2R_30_13650001 chr2R_13650001 RAL-843 1119 chr2R 13684220 13684261 chr2R 13684348 13684389 21 128 1.0 9.5 5.2 3.4 169 chr2R 13684220 intron fas + chr2R 13684304 intron fas + chr2R 13684389 intron fas + chr2R_21_13680001 chr2R_13680001 RAL-843 1120 chr2R 13692281 13692348 chr2R 13692415 13692482 20 134 9.0 9.5 9.2 2.0 201 chr2R 13692281 intron,exon fas +,CG6220 - chr2R 13692382 intron,intron fas +,CG6220 - chr2R 13692482 intron,intron fas +,CG6220 - chr2R_20_13690001 chr2R_13690001 RAL-843 1121 chr2R 13695874 13695945 chr2R 13696745 13696816 29 868 6.0 7.5 6.8 3.7 942 chr2R 13695874 intron fas + chr2R 13696345 intron fas + chr2R 13696816 intron fas + chr2R_29_13695001 chr2R_13695001 RAL-843 1122 chr2R 13709797 13709831 chr2R 13709940 13709974 21 141 10.5 0.0 5.2 3.4 177 chr2R 13709797 intron fas + chr2R 13709886 intron fas + chr2R 13709974 intron fas + chr2R_21_13705001 chr2R_13705001 RAL-843 1123 chr2R 13709832 13709854 chr2R 13709939 13709997 11 139 6.5 0.0 3.2 2.6 165 chr2R 13709832 intron fas + chr2R 13709914 intron fas + chr2R 13709997 intron fas + chr2R_11_13705001 chr2R_13705001 RAL-843 1124 chr2R 13721166 13721202 chr2R 13721299 13721322 14 127 13.5 14.0 13.8 0.9 156 chr2R 13721166 intron fas + chr2R 13721244 intron fas + chr2R 13721322 intron fas + chr2R_14_13720001 chr2R_13720001 RAL-843 1125 chr2R 13721206 13721228 chr2R 13721297 13721335 15 120 7.0 14.0 10.5 1.3 129 chr2R 13721206 intron fas + chr2R 13721270 intron fas + chr2R 13721335 intron fas + chr2R_15_13720001 chr2R_13720001 RAL-843 1126 chr2R 13728082 13728095 chr2R 13735792 13735805 opus 9 7710 17.5 2.0 9.8 0.8 7723 chr2R 13728082 intron fas + chr2R 13731944 intron fas + chr2R 13735805 intron fas + chr2R_9_13730001 chr2R_13730001 RAL-843 1127 chr2R 13728102 13728142 chr2R 13735790 13735852 opus 12 7708 9.0 2.0 5.5 1.8 7750 chr2R 13728102 intron fas + chr2R 13731977 intron fas + chr2R 13735852 intron fas + chr2R_12_13730001 chr2R_13730001 RAL-843 1128 chr2R 13738860 13738928 chr2R 13739001 13739069 12 141 5.0 6.0 5.5 1.8 209 chr2R 13738860 intron fas + chr2R 13738964 intron fas + chr2R 13739069 intron fas + chr2R_12_13735001 chr2R_13735001 RAL-843 1129 chr2R 13752775 13752833 chr2R 13752923 13752981 25 148 10.5 9.0 9.8 2.3 206 chr2R 13752775 intergenic not near genes chr2R 13752878 intergenic not near genes chr2R 13752981 intergenic not near genes chr2R_25_13750001 chr2R_13750001 RAL-843 1130 chr2R 13768945 13769002 chr2R 13769090 13769151 18 147 10.0 9.5 9.8 1.7 206 chr2R 13768945 intergenic not near genes chr2R 13769048 intergenic not near genes chr2R 13769151 intergenic not near genes chr2R_18_13765001 chr2R_13765001 RAL-843 1131 chr2R 13772637 13772682 chr2R 13772756 13772811 16 125 0.0 4.0 2.0 5.3 174 chr2R 13772637 intron Cpr50Ca + chr2R 13772724 intron Cpr50Ca + chr2R 13772811 intron Cpr50Ca + chr2R_16_13770001 chr2R_13770001 RAL-843 1132 chr2R 13790282 13790297 chr2R 13790402 13790423 9 125 16.5 1.5 9.0 0.9 141 chr2R 13790282 intergenic not near genes chr2R 13790352 intergenic not near genes chr2R 13790423 intergenic not near genes chr2R_9_13790001 chr2R_13790001 RAL-843 1133 chr2R 13905576 13905585 chr2R 13907608 13907610 Rt1a 5 2030 3.5 16.0 9.8 0.5 2034 chr2R 13905576 intron shot - chr2R 13906593 intron shot - chr2R 13907610 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-843 1134 chr2R 13905586 13905615 chr2R 13907607 13907647 Rt1a 5 2027 0.0 16.0 8.0 0.6 2061 chr2R 13905586 intron shot - chr2R 13906616 intron shot - chr2R 13907647 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-843 1135 chr2R 13924423 13924442 chr2R 13924590 13924609 6 167 14.5 6.5 10.5 0.5 186 chr2R 13924423 intron shot - chr2R 13924516 intron shot - chr2R 13924609 intron shot - chr2R_6_13920001 chr2R_13920001 RAL-843 1136 chr2R 13925824 13925893 chr2R 13926028 13926097 34 203 5.0 16.5 10.8 2.9 273 chr2R 13925824 intron shot - chr2R 13925960 intron shot - chr2R 13926097 intron shot - chr2R_34_13925001 chr2R_13925001 RAL-843 1137 chr2R 13963474 13963537 chr2R 13963612 13963674 17 138 6.0 6.0 6.0 2.4 200 chr2R 13963474 intron Cp1 + chr2R 13963574 intron Cp1 + chr2R 13963674 intron Cp1 + chr2R_17_13960001 chr2R_13960001 RAL-843 1138 chr2R 14018119 14018192 chr2R 14018253 14018255 30 132 6.0 11.0 8.5 3.2 136 chr2R 14018119 intron mam + chr2R 14018187 intron mam + chr2R 14018255 intron mam + chr2R_30_14015001 chr2R_14015001 RAL-843 1139 chr2R 14050803 14050851 chr2R 14050941 14050943 16 129 17.0 13.5 15.2 1.0 140 chr2R 14050803 intron mam + chr2R 14050873 intron mam + chr2R 14050943 intron mam + chr2R_16_14050001 chr2R_14050001 RAL-843 1140 chr2R 14084165 14084373 chr2R 14084294 14084517 16 131 0.0 0.0 0.0 16.0 352 chr2R 14084165 intron Prosap - chr2R 14084341 intron Prosap - chr2R 14084517 intron Prosap - chr2R_16_14080001 chr2R_14080001 RAL-843 1141 chr2R 14118926 14118969 chr2R 14119056 14119099 16 127 5.0 4.5 4.8 2.8 173 chr2R 14118926 intron Prosap - chr2R 14119012 intron Prosap - chr2R 14119099 intron Prosap - chr2R_16_14115001 chr2R_14115001 RAL-843 1142 chr2R 14141909 14141940 chr2R 14142064 14142095 11 155 21.5 17.5 19.5 0.5 186 chr2R 14141909 intergenic not near genes chr2R 14142002 intergenic not near genes chr2R 14142095 intergenic not near genes chr2R_11_14140001 chr2R_14140001 RAL-843 1143 chr2R 14193544 14193546 chr2R 14195561 14195563 4 2017 8.5 12.5 10.5 0.3 2019 chr2R 14193544 exon CG30069 + chr2R 14194554 exon CG30069 + chr2R 14195563 exon CG30069 + chr2R_4_14190001 chr2R_14190001 RAL-843 1144 chr2R 14285025 14285048 chr2R 14285158 14285181 12 133 0.0 7.0 3.5 2.7 156 chr2R 14285025 intron Ih + chr2R 14285103 intron Ih + chr2R 14285181 intron Ih + chr2R_12_14285001 chr2R_14285001 RAL-843 1145 chr2R 14318546 14318554 chr2R 14318667 14318689 6 133 15.0 0.0 7.5 0.7 143 chr2R 14318546 intron Shroom + chr2R 14318618 intron Shroom + chr2R 14318689 intron Shroom + chr2R_6_14315001 chr2R_14315001 RAL-843 1146 chr2R 14357510 14357577 chr2R 14357650 14357717 34 139 8.0 5.0 6.5 4.5 207 chr2R 14357510 intergenic CG8617 -,Arc1 - chr2R 14357614 intergenic Arc1 -,CG8617 - chr2R 14357717 intergenic Arc1 -,CG8617 - chr2R_34_14355001 chr2R_14355001 RAL-843 1147 chr2R 14393819 14393897 chr2R 14393954 14394032 27 124 4.5 12.5 8.5 2.8 213 chr2R 14393819 intergenic not near genes chr2R 14393926 intergenic not near genes chr2R 14394032 intergenic not near genes chr2R_27_14390001 chr2R_14390001 RAL-843 1148 chr2R 14400476 14400542 chr2R 14400605 14400664 24 127 8.5 6.5 7.5 2.8 188 chr2R 14400476 intergenic not near genes chr2R 14400570 intergenic not near genes chr2R 14400664 intergenic not near genes chr2R_24_14400001 chr2R_14400001 RAL-843 1149 chr2R 14418948 14419017 chr2R 14419076 14419145 22 127 12.0 10.5 11.2 1.8 197 chr2R 14418948 intergenic not near genes chr2R 14419046 intergenic not near genes chr2R 14419145 intergenic not near genes chr2R_22_14415001 chr2R_14415001 RAL-843 1150 chr2R 14457434 14457719 chr2R 14457560 14457851 6 127 0.0 2.0 1.0 3.0 417 chr2R 14457434 intron Oaz + chr2R 14457642 intron Oaz + chr2R 14457851 intron Oaz + chr2R_6_14455001 chr2R_14455001 RAL-843 1151 chr2R 14467268 14467272 chr2R 14476471 14476480 roo 4 9207 14.0 11.0 12.5 0.3 9212 chr2R 14467268 intergenic not near genes chr2R 14471874 intergenic not near genes chr2R 14476480 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-843 1152 chr2R 14467273 14467327 chr2R 14476465 14476535 roo 21 9206 5.0 9.0 7.0 2.6 9262 chr2R 14467273 intergenic not near genes chr2R 14471904 intergenic not near genes chr2R 14476535 5` UTR CR44462 + chr2R_21_14470001 chr2R_14470001 RAL-843 1153 chr2R 14497339 14497387 chr2R 14498552 14498600 1360 11 1213 6.5 10.5 8.5 1.2 1261 chr2R 14497339 intergenic Cpsf160 -,L + chr2R 14497970 intron Cpsf160 - chr2R 14498600 3` UTR Cpsf160 - chr2R_11_14495001 chr2R_14495001 RAL-843 1154 chr2R 14514436 14514496 chr2R 14514578 14514639 28 142 9.0 5.0 7.0 3.5 203 chr2R 14514436 intron,exon Cpr51A -,CG30197 + chr2R 14514538 intron,intron Cpr51A -,CG30197 + chr2R 14514639 intron,intron Cpr51A -,CG30197 + chr2R_28_14510001 chr2R_14510001 RAL-843 1155 chr2R 14563491 14563516 chr2R 14563625 14563650 14 133 4.0 12.0 8.0 1.6 159 chr2R 14563491 intron ttv + chr2R 14563570 intron ttv + chr2R 14563650 intron ttv + chr2R_14_14560001 chr2R_14560001 RAL-843 1156 chr2R 14634234 14634304 chr2R 14634372 14634442 34 137 5.5 8.0 6.8 4.4 208 chr2R 14634234 intergenic not near genes chr2R 14634338 intergenic not near genes chr2R 14634442 intergenic not near genes chr2R_34_14630001 chr2R_14630001 RAL-843 1157 chr2R 14722269 14722289 chr2R 14722423 14722443 7 154 10.5 16.0 13.2 0.5 174 chr2R 14722269 intergenic not near genes chr2R 14722356 intergenic not near genes chr2R 14722443 intergenic not near genes chr2R_7_14720001 chr2R_14720001 RAL-843 1158 chr2R 14799865 14799885 chr2R 14799991 14800011 10 126 1.5 23.5 12.5 0.7 146 chr2R 14799865 intron kn - chr2R 14799938 intron kn - chr2R 14800011 intron kn - chr2R_10_14795001 chr2R_14795001 RAL-843 1159 chr2R 14803429 14803466 chr2R 14803559 14803596 12 130 2.5 7.5 5.0 2.0 167 chr2R 14803429 intron kn - chr2R 14803512 intron kn - chr2R 14803596 intron kn - chr2R_12_14800001 chr2R_14800001 RAL-843 1160 chr2R 14826349 14826384 chr2R 14826502 14826538 16 152 5.0 2.0 3.5 3.6 189 chr2R 14826349 intergenic not near genes chr2R 14826444 intergenic not near genes chr2R 14826538 intergenic not near genes chr2R_16_14825001 chr2R_14825001 RAL-843 1161 chr2R 14889171 14889240 chr2R 14897829 14897890 Max-element 18 8653 12.5 0.0 6.2 2.5 8719 chr2R 14889171 intergenic Cyp6a8 - chr2R 14893530 intergenic not near genes chr2R 14897890 intergenic not near genes chr2R_18_14890001 chr2R_14890001 RAL-843 1162 chr2R 14911651 14911723 chr2R 14911824 14911896 26 172 7.5 6.5 7.0 3.2 245 chr2R 14911651 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911896 intron CG10249 - chr2R_26_14910001 chr2R_14910001 RAL-843 1163 chr2R 14916505 14916558 chr2R 14916635 14916688 18 130 6.0 1.0 3.5 4.0 183 chr2R 14916505 intron CG10249 - chr2R 14916596 intron CG10249 - chr2R 14916688 intron CG10249 - chr2R_18_14915001 chr2R_14915001 RAL-843 1164 chr2R 14922098 14922218 chr2R 14922222 14922406 26 207 0.0 1.0 0.5 17.3 308 chr2R 14922098 intron CG10249 - chr2R 14922252 intron CG10249 - chr2R 14922406 intron CG10249 - chr2R_26_14920001 chr2R_14920001 RAL-843 1165 chr2R 14998469 14998512 chr2R 14998659 14998702 17 190 7.5 7.0 7.2 2.1 233 chr2R 14998469 intergenic not near genes chr2R 14998586 intergenic not near genes chr2R 14998702 intergenic not near genes chr2R_17_14995001 chr2R_14995001 RAL-843 1166 chr2R 15004685 15004748 chr2R 15005064 15005127 jockey 28 378 7.5 6.5 7.0 3.5 442 chr2R 15004685 intergenic not near genes chr2R 15004906 intergenic not near genes chr2R 15005127 intergenic not near genes chr2R_28_15000001 chr2R_15000001 RAL-843 1167 chr2R 15015414 15015487 chr2R 15022888 15022957 mdg1 22 7468 8.0 0.0 4.0 4.4 7543 chr2R 15015414 intron hbs + chr2R 15019186 intron hbs + chr2R 15022957 intron hbs + chr2R_22_15015001 chr2R_15015001 RAL-843 1168 chr2R 15051040 15051110 chr2R 15051172 15051242 38 130 6.0 9.0 7.5 4.5 202 chr2R 15051040 intergenic not near genes chr2R 15051141 intergenic not near genes chr2R 15051242 intergenic not near genes chr2R_38_15050001 chr2R_15050001 RAL-843 1169 chr2R 15065590 15065647 chr2R 15065696 15065755 21 113 7.0 6.0 6.5 2.8 165 chr2R 15065590 intergenic not near genes chr2R 15065672 intergenic not near genes chr2R 15065755 intergenic not near genes chr2R_21_15065001 chr2R_15065001 RAL-843 1170 chr2R 15084938 15084994 chr2R 15092037 15092093 297 13 7099 9.0 8.5 8.8 1.3 7155 chr2R 15084938 intergenic not near genes chr2R 15088516 intergenic not near genes chr2R 15092093 5` UTR CR44457 + chr2R_13_15085001 chr2R_15085001 RAL-843 1171 chr2R 15094847 15094908 chr2R 15094974 15095035 22 127 7.0 9.5 8.2 2.4 188 chr2R 15094847 intergenic not near genes chr2R 15094941 intergenic not near genes chr2R 15095035 intergenic not near genes chr2R_22_15090001 chr2R_15090001 RAL-843 1172 chr2R 15119271 15119341 chr2R 15127802 15127863 Tirant 27 8524 12.0 9.5 10.8 2.3 8592 chr2R 15119271 intron chn + chr2R 15123567 intron chn + chr2R 15127863 intron chn + chr2R_27_15120001 chr2R_15120001 RAL-843 1173 chr2R 15133444 15133499 chr2R 15133573 15133628 20 127 13.5 6.0 9.8 1.9 184 chr2R 15133444 intron chn + chr2R 15133536 intron chn + chr2R 15133628 intron chn + chr2R_20_15130001 chr2R_15130001 RAL-843 1174 chr2R 15137923 15137989 chr2R 15138052 15138101 15 127 9.5 3.0 6.2 2.1 178 chr2R 15137923 intron chn + chr2R 15138012 intron chn + chr2R 15138101 5` UTR chn + chr2R_15_15135001 chr2R_15135001 RAL-843 1175 chr2R 15201182 15201256 chr2R 15201323 15201397 21 140 7.5 3.5 5.5 3.2 215 chr2R 15201182 5` UTR GPHR - chr2R 15201290 5` UTR CG11807 + chr2R 15201397 intron CG11807 + chr2R_21_15200001 chr2R_15200001 RAL-843 1176 chr2R 15230353 15230364 chr2R 15231008 15231019 6 655 28.5 2.0 15.2 0.4 666 chr2R 15230353 intron,5` UTR Fs -,CR44370 + chr2R 15230686 intron,5` UTR Fs -,CR44370 + chr2R 15231019 intron,5` UTR Fs -,CR44370 + chr2R_6_15230001 chr2R_15230001 RAL-843 1177 chr2R 15295679 15295743 chr2R 15295838 15295903 29 170 10.0 9.0 9.5 2.8 224 chr2R 15295679 intron Trpm - chr2R 15295791 intron Trpm - chr2R 15295903 intron Trpm - chr2R_29_15295001 chr2R_15295001 RAL-843 1178 chr2R 15296109 15296172 chr2R 15296242 15296301 26 130 5.5 5.5 5.5 4.0 192 chr2R 15296109 intron Trpm - chr2R 15296205 intron Trpm - chr2R 15296301 intron Trpm - chr2R_26_15295001 chr2R_15295001 RAL-843 1179 chr2R 15330168 15330234 chr2R 15330352 15330413 21 183 1.0 5.0 3.0 5.2 245 chr2R 15330168 intergenic CR44371 - chr2R 15330290 intergenic CR44371 - chr2R 15330413 3` UTR CR44371 - chr2R_21_15330001 chr2R_15330001 RAL-843 1180 chr2R 15340645 15340652 chr2R 15349278 15349285 Tirant 5 8633 26.0 13.0 19.5 0.2 8640 chr2R 15340645 intron unc-5 + chr2R 15344965 intron unc-5 + chr2R 15349285 intron unc-5 + chr2R_5_15340001 chr2R_15340001 RAL-843 1181 chr2R 15340653 15340663 chr2R 15349276 15349296 Tirant 11 8632 23.0 12.5 17.8 0.6 8643 chr2R 15340653 intron unc-5 + chr2R 15344974 intron unc-5 + chr2R 15349296 intron unc-5 + chr2R_11_15340001 chr2R_15340001 RAL-843 1182 chr2R 15538255 15538299 chr2R 15538390 15538435 7 135 13.5 4.0 8.8 0.7 180 chr2R 15538255 5` UTR CG30467 + chr2R 15538345 exon CG30467 + chr2R 15538435 exon CG30467 + chr2R_7_15535001 chr2R_15535001 RAL-843 1183 chr2R 15538300 15538308 chr2R 15538389 15538413 4 100 10.5 4.0 7.2 0.5 113 chr2R 15538300 5` UTR CG30467 + chr2R 15538356 exon CG30467 + chr2R 15538413 exon CG30467 + chr2R_4_15535001 chr2R_15535001 RAL-843 1184 chr2R 15538316 15538332 chr2R 15538386 15538436 5 101 5.0 4.0 4.5 0.9 120 chr2R 15538316 exon CG30467 + chr2R 15538376 exon CG30467 + chr2R 15538436 exon CG30467 + chr2R_5_15535001 chr2R_15535001 RAL-843 1185 chr2R 15547493 15547514 chr2R 15547932 15547953 12 438 19.5 10.5 15.0 0.8 460 chr2R 15547493 intron CG8192 - chr2R 15547723 intron CG8192 - chr2R 15547953 intron CG8192 - chr2R_12_15545001 chr2R_15545001 RAL-843 1186 chr2R 15645647 15645893 chr2R 15645776 15646004 26 139 0.0 0.0 0.0 26.0 357 chr2R 15645647 intron CG42524 + chr2R 15645826 intron CG42524 + chr2R 15646004 intron CG42524 + chr2R_26_15645001 chr2R_15645001 RAL-843 1187 chr2R 15655938 15655952 chr2R 15656068 15656082 5 130 19.0 12.5 15.8 0.3 144 chr2R 15655938 intron CG42524 + chr2R 15656010 intron CG42524 + chr2R 15656082 intron CG42524 + chr2R_5_15655001 chr2R_15655001 RAL-843 1188 chr2R 15655953 15656034 chr2R 15656062 15656175 21 129 12.5 13.0 12.8 1.5 222 chr2R 15655953 intron CG42524 + chr2R 15656064 intron CG42524 + chr2R 15656175 intron CG42524 + chr2R_21_15655001 chr2R_15655001 RAL-843 1189 chr2R 15664779 15664831 chr2R 15664916 15664963 19 131 15.5 4.5 10.0 1.7 184 chr2R 15664779 intron fus - chr2R 15664871 intron fus - chr2R 15664963 intron fus - chr2R_19_15660001 chr2R_15660001 RAL-843 1190 chr2R 15664833 15664841 chr2R 15664911 15664973 8 120 13.0 3.0 8.0 0.9 140 chr2R 15664833 intron fus - chr2R 15664903 intron fus - chr2R 15664973 intron fus - chr2R_8_15660001 chr2R_15660001 RAL-843 1191 chr2R 15697849 15697882 chr2R 15697980 15698013 8 131 18.0 1.5 9.8 0.7 164 chr2R 15697849 exon CG33462 + chr2R 15697931 3` UTR CG33462 + chr2R 15698013 intergenic CG33462 + chr2R_8_15695001 chr2R_15695001 RAL-843 1192 chr2R 15752819 15752886 chr2R 15752948 15753015 18 128 10.5 6.5 8.5 1.9 196 chr2R 15752819 intron CG30089 + chr2R 15752917 intron CG30089 + chr2R 15753015 intron CG30089 + chr2R_18_15750001 chr2R_15750001 RAL-843 1193 chr2R 15785822 15785897 chr2R 15785951 15786000 30 126 15.0 11.0 13.0 2.1 178 chr2R 15785822 intron Zasp52 - chr2R 15785911 intron Zasp52 - chr2R 15786000 intron Zasp52 - chr2R_30_15785001 chr2R_15785001 RAL-843 1194 chr2R 15786528 15786539 chr2R 15786655 15786666 4 127 9.0 34.5 21.8 0.2 138 chr2R 15786528 intron Zasp52 - chr2R 15786597 intron Zasp52 - chr2R 15786666 intron Zasp52 - chr2R_4_15785001 chr2R_15785001 RAL-843 1195 chr2R 15833486 15833544 chr2R 15833623 15833681 18 132 9.5 14.0 11.8 1.4 195 chr2R 15833486 intron,intron tun +,Poxn - chr2R 15833584 intron,intron tun +,Poxn - chr2R 15833681 intron,intron tun +,Poxn - chr2R_18_15830001 chr2R_15830001 RAL-843 1196 chr2R 15869289 15869364 chr2R 15869419 15869494 21 129 8.5 5.5 7.0 2.6 205 chr2R 15869289 intergenic Rif1 -,sli - chr2R 15869392 intergenic sli -,Rif1 - chr2R 15869494 3` UTR sli - chr2R_21_15865001 chr2R_15865001 RAL-843 1197 chr2R 15891770 15891830 chr2R 15891896 15891956 18 126 6.0 9.5 7.8 2.0 186 chr2R 15891770 intron sli - chr2R 15891863 intron sli - chr2R 15891956 intron sli - chr2R_18_15890001 chr2R_15890001 RAL-843 1198 chr2R 15898836 15898898 chr2R 15898984 15899046 22 148 12.5 9.0 10.8 1.9 210 chr2R 15898836 intron sli - chr2R 15898941 intron sli - chr2R 15899046 intron sli - chr2R_22_15895001 chr2R_15895001 RAL-843 1199 chr2R 15951842 15951850 chr2R 15951962 15951973 5 123 0.5 20.5 10.5 0.4 131 chr2R 15951842 intron Strn-Mlck - chr2R 15951908 intron Strn-Mlck - chr2R 15951973 intron Strn-Mlck - chr2R_5_15950001 chr2R_15950001 RAL-843 1200 chr2R 15998680 15998692 chr2R 15998816 15998821 8 135 18.5 2.5 10.5 0.7 141 chr2R 15998680 intron ATPCL - chr2R 15998750 intron ATPCL - chr2R 15998821 intron ATPCL - chr2R_8_15995001 chr2R_15995001 RAL-843 1201 chr2R 16017637 16017707 chr2R 16017774 16017807 25 132 8.0 15.5 11.8 2.0 170 chr2R 16017637 intergenic CG8399 +,CG8397 - chr2R 16017722 intergenic CG8399 + chr2R 16017807 5` UTR CG8399 + chr2R_25_16015001 chr2R_16015001 RAL-843 1202 chr2R 16054919 16054926 chr2R 16055038 16055059 4 130 26.0 24.5 25.2 0.2 140 chr2R 16054919 intron CG8405 + chr2R 16054989 intron CG8405 + chr2R 16055059 intron CG8405 + chr2R_4_16050001 chr2R_16050001 RAL-843 1203 chr2R 16054933 16054959 chr2R 16055036 16055092 13 126 18.0 22.5 20.2 0.6 159 chr2R 16054933 intron CG8405 + chr2R 16055012 intron CG8405 + chr2R 16055092 intron CG8405 + chr2R_13_16055001 chr2R_16055001 RAL-843 1204 chr2R 16061688 16061715 chr2R 16064369 16064398 Burdock 16 2682 13.5 6.0 9.8 1.5 2710 chr2R 16061688 intergenic not near genes chr2R 16063043 intergenic not near genes chr2R 16064398 intergenic not near genes chr2R_16_16060001 chr2R_16060001 RAL-843 1205 chr2R 16153448 16153489 chr2R 16153743 16153769 11 293 29.0 25.0 27.0 0.4 321 chr2R 16153448 intron lbk + chr2R 16153608 intron lbk + chr2R 16153769 intron lbk + chr2R_11_16150001 chr2R_16150001 RAL-843 1206 chr2R 16245587 16245655 chr2R 16245725 16245793 26 138 8.5 7.0 7.8 3.0 206 chr2R 16245587 intron CngA - chr2R 16245690 intron CngA - chr2R 16245793 intron CngA - chr2R_26_16245001 chr2R_16245001 RAL-843 1207 chr2R 16352821 16352864 chr2R 16352953 16352997 11 133 11.0 11.5 11.2 0.9 176 chr2R 16352821 intergenic not near genes chr2R 16352909 intergenic not near genes chr2R 16352997 intergenic not near genes chr2R_11_16350001 chr2R_16350001 RAL-843 1208 chr2R 16536922 16536996 chr2R 16537122 16537185 15 192 0.0 9.5 4.8 2.6 263 chr2R 16536922 3` UTR loopin-1 + chr2R 16537054 3` UTR loopin-1 + chr2R 16537185 intergenic loopin-1 + chr2R_15_16535001 chr2R_16535001 RAL-843 1209 chr2R 16539603 16539657 chr2R 16544862 16544916 copia 19 5259 7.0 7.0 7.0 2.4 5313 chr2R 16539603 intergenic not near genes chr2R 16542260 intergenic not near genes chr2R 16544916 intergenic not near genes chr2R_19_16540001 chr2R_16540001 RAL-843 1210 chr2R 16549447 16549508 chr2R 16549595 16549656 19 142 8.0 10.5 9.2 1.9 209 chr2R 16549447 intergenic not near genes chr2R 16549552 intergenic not near genes chr2R 16549656 intergenic not near genes chr2R_19_16545001 chr2R_16545001 RAL-843 1211 chr2R 16617056 16617085 chr2R 16617165 16617215 6 126 8.0 13.0 10.5 0.5 159 chr2R 16617056 intron CG5065 + chr2R 16617136 intron CG5065 + chr2R 16617215 intron CG5065 + chr2R_6_16615001 chr2R_16615001 RAL-843 1212 chr2R 16732817 16732880 chr2R 16733037 16733099 22 218 8.5 9.5 9.0 2.2 282 chr2R 16732817 5` UTR CG30463 - chr2R 16732958 intergenic CG30463 - chr2R 16733099 intergenic CG30463 - chr2R_22_16730001 chr2R_16730001 RAL-843 1213 chr2R 16739434 16739446 chr2R 16739567 16739579 7 133 12.0 0.0 6.0 1.0 145 chr2R 16739434 intergenic not near genes chr2R 16739506 intergenic not near genes chr2R 16739579 intergenic not near genes chr2R_7_16735001 chr2R_16735001 RAL-843 1214 chr2R 16787424 16787491 chr2R 16787556 16787623 20 131 10.5 5.5 8.0 2.2 199 chr2R 16787424 intron CG5522 + chr2R 16787524 intron CG5522 + chr2R 16787623 intron CG5522 + chr2R_20_16785001 chr2R_16785001 RAL-843 1215 chr2R 16804809 16804874 chr2R 16804919 16804962 17 107 12.5 15.5 14.0 1.1 153 chr2R 16804809 intergenic not near genes chr2R 16804886 intergenic not near genes chr2R 16804962 intergenic not near genes chr2R_17_16800001 chr2R_16800001 RAL-843 1216 chr2R 16879985 16880064 chr2R 16880112 16880191 19 126 6.0 3.0 4.5 3.5 206 chr2R 16879985 intron CG8910 - chr2R 16880088 intron CG8910 - chr2R 16880191 intron CG8910 - chr2R_19_16880001 chr2R_16880001 RAL-843 1217 chr2R 16892294 16892301 chr2R 16892436 16892443 4 142 9.0 13.5 11.2 0.3 149 chr2R 16892294 intron CG8910 - chr2R 16892368 intron CG8910 - chr2R 16892443 intron CG8910 - chr2R_4_16890001 chr2R_16890001 RAL-843 1218 chr2R 16930608 16930626 chr2R 16930736 16930754 5 128 0.0 14.5 7.2 0.6 146 chr2R 16930608 intron Pkc53E + chr2R 16930681 intron Pkc53E + chr2R 16930754 intron Pkc53E + chr2R_5_16930001 chr2R_16930001 RAL-843 1219 chr2R 16967925 16967947 chr2R 16968485 16968507 7 560 0.0 9.0 4.5 1.3 582 chr2R 16967925 intergenic not near genes chr2R 16968216 intergenic not near genes chr2R 16968507 intergenic not near genes chr2R_7_16965001 chr2R_16965001 RAL-843 1220 chr2R 16989077 16989139 chr2R 16989219 16989290 28 147 7.0 7.0 7.0 3.5 213 chr2R 16989077 intron Cbp53E + chr2R 16989184 intron Cbp53E + chr2R 16989290 intron Cbp53E + chr2R_28_16985001 chr2R_16985001 RAL-843 1221 chr2R 17048582 17048652 chr2R 17048711 17048781 30 128 3.5 6.5 5.0 5.0 199 chr2R 17048582 3` UTR CG9642 + chr2R 17048682 3` UTR CG9642 + chr2R 17048781 3` UTR CG9642 + chr2R_30_17045001 chr2R_17045001 RAL-843 1222 chr2R 17090682 17090747 chr2R 17090821 17090886 37 138 6.0 6.0 6.0 5.3 204 chr2R 17090682 intron Sply - chr2R 17090784 intron Sply - chr2R 17090886 intron Sply - chr2R_37_17090001 chr2R_17090001 RAL-843 1223 chr2R 17098632 17098648 chr2R 17098755 17098761 8 133 22.5 12.5 17.5 0.4 129 chr2R 17098632 intergenic GstS1 - chr2R 17098696 intergenic GstS1 - chr2R 17098761 intergenic GstS1 - chr2R_8_17095001 chr2R_17095001 RAL-843 1224 chr2R 17101078 17101117 chr2R 17101197 17101251 4 130 0.0 13.5 6.8 0.5 173 chr2R 17101078 intron CG30456 + chr2R 17101164 intron CG30456 + chr2R 17101251 intron CG30456 + chr2R_4_17100001 chr2R_17100001 RAL-843 1225 chr2R 17147208 17147259 chr2R 17152289 17152340 jockey 17 5081 12.0 14.0 13.0 1.2 5132 chr2R 17147208 intergenic not near genes chr2R 17149774 intergenic not near genes chr2R 17152340 intergenic not near genes chr2R_17_17145001 chr2R_17145001 RAL-843 1226 chr2R 17161304 17161364 chr2R 17161561 17161618 14 254 8.5 3.0 5.8 2.1 314 chr2R 17161304 intergenic CG30457 - chr2R 17161461 intergenic not near genes chr2R 17161618 intergenic not near genes chr2R_14_17160001 chr2R_17160001 RAL-843 1227 chr2R 17236471 17236496 chr2R 17241725 17241750 copia 8 5253 13.5 5.0 9.2 0.8 5279 chr2R 17236471 intron mbl + chr2R 17239110 intron mbl + chr2R 17241750 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-843 1228 chr2R 17236497 17236532 chr2R 17241720 17241764 copia 8 5247 9.5 3.5 6.5 1.1 5267 chr2R 17236497 intron mbl + chr2R 17239130 intron mbl + chr2R 17241764 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-843 1229 chr2R 17269793 17269867 chr2R 17269968 17270042 27 175 5.5 7.5 6.5 3.6 249 chr2R 17269793 intron mbl + chr2R 17269918 intron mbl + chr2R 17270042 intron mbl + chr2R_27_17265001 chr2R_17265001 RAL-843 1230 chr2R 17351680 17351732 chr2R 17351792 17351867 21 133 11.0 4.0 7.5 2.5 187 chr2R 17351680 intron mbl + chr2R 17351774 intron mbl + chr2R 17351867 intron mbl + chr2R_21_17350001 chr2R_17350001 RAL-843 1231 chr2R 17389225 17389302 chr2R 17389366 17389393 24 129 8.5 10.5 9.5 2.3 168 chr2R 17389225 intergenic CR44344 - chr2R 17389309 intergenic CR44344 - chr2R 17389393 intergenic CR44344 - chr2R_24_17385001 chr2R_17385001 RAL-843 1232 chr2R 17443724 17443802 chr2R 17443850 17443928 14 126 6.0 7.0 6.5 1.9 204 chr2R 17443724 intron EDTP - chr2R 17443826 intron EDTP - chr2R 17443928 intron EDTP - chr2R_14_17440001 chr2R_17440001 RAL-843 1233 chr2R 17458960 17459022 chr2R 17459095 17459157 21 134 13.0 10.0 11.5 1.7 197 chr2R 17458960 intron CG14478 + chr2R 17459058 intron CG14478 + chr2R 17459157 intron CG14478 + chr2R_21_17455001 chr2R_17455001 RAL-843 1234 chr2R 17470285 17470354 chr2R 17470420 17470488 18 134 5.0 0.0 2.5 5.1 203 chr2R 17470285 intron qkr54B + chr2R 17470386 intron qkr54B + chr2R 17470488 intron qkr54B + chr2R_18_17470001 chr2R_17470001 RAL-843 1235 chr2R 17478787 17478815 chr2R 17478915 17478942 9 127 16.0 1.5 8.8 0.9 155 chr2R 17478787 3` UTR,intron CG43110 -,veil + chr2R 17478864 3` UTR,intron CG43110 -,veil + chr2R 17478942 3` UTR,intron CG43110 -,veil + chr2R_9_17475001 chr2R_17475001 RAL-843 1236 chr2R 17478820 17478860 chr2R 17478911 17478979 20 117 9.5 3.0 6.2 2.8 159 chr2R 17478820 3` UTR,intron CG43110 -,veil + chr2R 17478900 3` UTR,intron CG43110 -,veil + chr2R 17478979 3` UTR,intron CG43110 -,veil + chr2R_20_17475001 chr2R_17475001 RAL-843 1237 chr2R 17485873 17485946 chr2R 17490685 17490756 F-element 18 4808 9.5 7.5 8.5 1.9 4883 chr2R 17485873 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488314 intron NT5E-2 + chr2R 17490756 intron NT5E-2 + chr2R_18_17485001 chr2R_17485001 RAL-843 1238 chr2R 17616941 17616965 chr2R 17617069 17617085 16 127 16.5 8.0 12.2 1.2 144 chr2R 17616941 intron,3` UTR CG10936 -,CG44403 - chr2R 17617013 intron,3` UTR CG10936 -,CG44403 - chr2R 17617085 intron,3` UTR CG10936 -,CG44403 - chr2R_16_17615001 chr2R_17615001 RAL-843 1239 chr2R 17616966 17617004 chr2R 17617058 17617134 9 124 8.5 8.0 8.2 1.0 168 chr2R 17616966 intron,3` UTR CG10936 -,CG44403 - chr2R 17617050 intron,3` UTR CG10936 -,CG44403 - chr2R 17617134 intron,3` UTR CG10936 -,CG44403 - chr2R_9_17615001 chr2R_17615001 RAL-843 1240 chr2R 17643955 17644015 chr2R 17644081 17644145 5 122 0.0 9.0 4.5 0.9 190 chr2R 17643955 intergenic not near genes chr2R 17644050 intergenic not near genes chr2R 17644145 intergenic not near genes chr2R_5_17640001 chr2R_17640001 RAL-843 1241 chr2R 17653182 17653250 chr2R 17653318 17653386 46 135 10.5 14.0 12.2 3.5 204 chr2R 17653182 intron CCHa1-R - chr2R 17653284 intron CCHa1-R - chr2R 17653386 intron CCHa1-R - chr2R_46_17650001 chr2R_17650001 RAL-843 1242 chr2R 17660558 17660624 chr2R 17660684 17660715 14 122 6.5 2.0 4.2 2.7 157 chr2R 17660558 intron CCHa1-R - chr2R 17660636 intron CCHa1-R - chr2R 17660715 intron CCHa1-R - chr2R_14_17660001 chr2R_17660001 RAL-843 1243 chr2R 17679576 17679602 chr2R 17679753 17679779 6 177 1.0 3.0 2.0 2.0 203 chr2R 17679576 intron Sema-1b - chr2R 17679678 intron Sema-1b - chr2R 17679779 intron Sema-1b - chr2R_6_17675001 chr2R_17675001 RAL-843 1244 chr2R 17708354 17708398 chr2R 17708485 17708529 13 131 6.5 7.5 7.0 1.6 175 chr2R 17708354 intron CG6424 - chr2R 17708442 intron CG6424 - chr2R 17708529 intron CG6424 - chr2R_13_17705001 chr2R_17705001 RAL-843 1245 chr2R 17709962 17710102 chr2R 17710102 17710230 12 142 0.0 0.0 0.0 12.0 268 chr2R 17709962 intron CG6424 - chr2R 17710096 intron CG6424 - chr2R 17710230 intron CG6424 - chr2R_12_17710001 chr2R_17710001 RAL-843 1246 chr2R 17782318 17782390 chr2R 17783571 17783643 pogo 24 1253 5.0 7.5 6.2 3.3 1325 chr2R 17782318 intergenic CG33981 -,fab1 - chr2R 17782980 intergenic not near genes chr2R 17783643 intergenic mir-31a - chr2R_24_17780001 chr2R_17780001 RAL-843 1247 chr2R 17783977 17784048 chr2R 17784266 17784339 pogo 21 286 8.0 10.5 9.2 2.1 362 chr2R 17783977 intergenic mir-31a - chr2R 17784158 intergenic mir-31a - chr2R 17784339 intergenic mir-31a - chr2R_21_17780001 chr2R_17780001 RAL-843 1248 chr2R 17785037 17785044 chr2R 17785175 17785182 4 138 18.0 14.0 16.0 0.2 145 chr2R 17785037 intergenic not near genes chr2R 17785110 intergenic not near genes chr2R 17785182 intergenic not near genes chr2R_4_17785001 chr2R_17785001 RAL-843 1249 chr2R 17785048 17785102 chr2R 17785186 17785191 13 131 8.5 17.0 12.8 0.9 143 chr2R 17785048 intergenic not near genes chr2R 17785120 intergenic not near genes chr2R 17785191 intergenic not near genes chr2R_13_17785001 chr2R_17785001 RAL-843 1250 chr2R 17821685 17821694 chr2R 17821817 17821826 4 132 6.5 8.0 7.2 0.5 141 chr2R 17821685 intron grh + chr2R 17821756 intron grh + chr2R 17821826 intron grh + chr2R_4_17820001 chr2R_17820001 RAL-843 1251 chr2R 17852881 17852952 chr2R 17853022 17853093 29 141 7.0 10.0 8.5 3.1 212 chr2R 17852881 intron olf186-F + chr2R 17852987 intron olf186-F + chr2R 17853093 intron olf186-F + chr2R_29_17850001 chr2R_17850001 RAL-843 1252 chr2R 17860944 17860973 chr2R 17861139 17861199 8 208 8.0 9.0 8.5 0.8 255 chr2R 17860944 exon CG14490 + chr2R 17861072 exon CG14490 + chr2R 17861199 exon CG14490 + chr2R_8_17860001 chr2R_17860001 RAL-843 1253 chr2R 17898717 17898771 chr2R 17898856 17898902 11 134 3.5 7.0 5.2 1.8 185 chr2R 17898717 intron Elk + chr2R 17898810 intron Elk + chr2R 17898902 intron Elk + chr2R_11_17895001 chr2R_17895001 RAL-843 1254 chr2R 17911605 17911624 chr2R 17911732 17911736 4 123 2.5 2.0 2.2 1.2 131 chr2R 17911605 intron Elk + chr2R 17911670 intron Elk + chr2R 17911736 intron Elk + chr2R_4_17910001 chr2R_17910001 RAL-843 1255 chr2R 17920247 17920309 chr2R 17920499 17920561 26 250 5.5 9.0 7.2 3.2 314 chr2R 17920247 intron Elk + chr2R 17920404 intron Elk + chr2R 17920561 intron Elk + chr2R_26_17920001 chr2R_17920001 RAL-843 1256 chr2R 17921251 17921285 chr2R 17921378 17921413 5 122 8.0 0.0 4.0 1.0 162 chr2R 17921251 exon Elk + chr2R 17921332 intron Elk + chr2R 17921413 intron Elk + chr2R_5_17920001 chr2R_17920001 RAL-843 1257 chr2R 17963276 17963290 chr2R 17963459 17963473 5 183 19.0 8.0 13.5 0.3 197 chr2R 17963276 intergenic not near genes chr2R 17963374 intergenic not near genes chr2R 17963473 intergenic not near genes chr2R_5_17960001 chr2R_17960001 RAL-843 1258 chr2R 17971002 17971040 chr2R 17971206 17971246 10 201 7.0 6.5 6.8 1.3 244 chr2R 17971002 intergenic not near genes chr2R 17971124 intergenic not near genes chr2R 17971246 intergenic not near genes chr2R_10_17970001 chr2R_17970001 RAL-843 1259 chr2R 17982876 17982949 chr2R 17983010 17983084 30 135 6.0 5.0 5.5 4.6 208 chr2R 17982876 intron dpr13 - chr2R 17982980 intron dpr13 - chr2R 17983084 intron dpr13 - chr2R_30_17980001 chr2R_17980001 RAL-843 1260 chr2R 17997025 17997100 chr2R 17997183 17997248 18 148 34.0 27.0 30.5 0.6 223 chr2R 17997025 intron dpr13 - chr2R 17997136 intron dpr13 - chr2R 17997248 intron dpr13 - chr2R_18_17995001 chr2R_17995001 RAL-843 1261 chr2R 18042771 18042995 chr2R 18042938 18043137 8 155 0.0 0.0 0.0 8.0 366 chr2R 18042771 3` UTR CG5773 - chr2R 18042954 3` UTR CG5773 - chr2R 18043137 exon CG5773 - chr2R_8_18040001 chr2R_18040001 RAL-843 1262 chr2R 18045636 18045692 chr2R 18046038 18046094 jockey 17 401 3.5 7.5 5.5 2.6 458 chr2R 18045636 intergenic not near genes chr2R 18045865 intergenic not near genes chr2R 18046094 intergenic CG5767 - chr2R_17_18045001 chr2R_18045001 RAL-843 1263 chr2R 18111648 18111690 chr2R 18115566 18115609 F-element 12 3919 11.5 11.0 11.2 1.0 3961 chr2R 18111648 intergenic not near genes chr2R 18113628 intergenic not near genes chr2R 18115609 intergenic not near genes chr2R_12_18110001 chr2R_18110001 RAL-843 1264 chr2R 18111693 18111707 chr2R 18115551 18115626 F-element 4 3904 8.5 7.0 7.8 0.5 3933 chr2R 18111693 intergenic not near genes chr2R 18113660 intergenic not near genes chr2R 18115626 intergenic not near genes chr2R_4_18110001 chr2R_18110001 RAL-843 1265 chr2R 18224568 18224580 chr2R 18224684 18224706 4 126 8.5 7.5 8.0 0.4 138 chr2R 18224568 intergenic not near genes chr2R 18224637 intergenic not near genes chr2R 18224706 intergenic not near genes chr2R_4_18220001 chr2R_18220001 RAL-843 1266 chr2R 18224584 18224620 chr2R 18224676 18224718 21 112 4.5 7.5 6.0 3.0 134 chr2R 18224584 intergenic not near genes chr2R 18224651 intergenic not near genes chr2R 18224718 intergenic not near genes chr2R_21_18220001 chr2R_18220001 RAL-843 1267 chr2R 18239023 18239057 chr2R 18240544 18240559 12 1517 12.5 8.0 10.2 1.1 1536 chr2R 18239023 intergenic not near genes chr2R 18239791 intergenic not near genes chr2R 18240559 intergenic not near genes chr2R_12_18235001 chr2R_18235001 RAL-843 1268 chr2R 18239058 18239091 chr2R 18240533 18240591 17 1511 5.0 6.5 5.8 2.5 1533 chr2R 18239058 intergenic not near genes chr2R 18239824 intergenic not near genes chr2R 18240591 intergenic not near genes chr2R_17_18235001 chr2R_18235001 RAL-843 1269 chr2R 18268658 18268665 chr2R 18268787 18268794 4 129 0.0 8.5 4.2 0.8 136 chr2R 18268658 intergenic not near genes chr2R 18268726 intergenic not near genes chr2R 18268794 intergenic not near genes chr2R_4_18265001 chr2R_18265001 RAL-843 1270 chr2R 18308241 18308253 chr2R 18308397 18308409 8 156 12.5 5.0 8.8 0.8 168 chr2R 18308241 intron sbb - chr2R 18308325 intron sbb - chr2R 18308409 intron sbb - chr2R_8_18305001 chr2R_18305001 RAL-843 1271 chr2R 18308255 18308317 chr2R 18308395 18308473 30 153 5.5 4.5 5.0 5.0 218 chr2R 18308255 intron sbb - chr2R 18308364 intron sbb - chr2R 18308473 intron sbb - chr2R_30_18305001 chr2R_18305001 RAL-843 1272 chr2R 18318332 18318344 chr2R 18318463 18318475 8 131 0.0 0.0 0.0 8.0 143 chr2R 18318332 intron sbb - chr2R 18318404 intron sbb - chr2R 18318475 intron sbb - chr2R_8_18315001 chr2R_18315001 RAL-843 1273 chr2R 18401354 18401426 chr2R 18401541 18401613 29 187 10.0 9.5 9.8 2.7 259 chr2R 18401354 exon GstE3 + chr2R 18401484 intergenic GstE3 + chr2R 18401613 intergenic GstE3 + chr2R_29_18400001 chr2R_18400001 RAL-843 1274 chr2R 18402055 18402124 chr2R 18402184 18402242 18 119 7.0 3.0 5.0 3.0 187 chr2R 18402055 intergenic not near genes chr2R 18402148 intergenic not near genes chr2R 18402242 intergenic not near genes chr2R_18_18400001 chr2R_18400001 RAL-843 1275 chr2R 18405705 18405783 chr2R 18405836 18405913 20 130 5.5 4.0 4.8 3.4 208 chr2R 18405705 intergenic GstE6 +,GstE5 + chr2R 18405809 intergenic GstE6 +,GstE5 + chr2R 18405913 intergenic GstE6 + chr2R_20_18405001 chr2R_18405001 RAL-843 1276 chr2R 18471897 18471924 chr2R 18472023 18472050 18 126 7.5 4.5 6.0 2.6 153 chr2R 18471897 intron CG30116 - chr2R 18471974 intron CG30116 - chr2R 18472050 intron CG30116 - chr2R_18_18470001 chr2R_18470001 RAL-843 1277 chr2R 18480411 18480480 chr2R 18480568 18480637 7 157 0.0 0.0 0.0 7.0 226 chr2R 18480411 intron CG30116 - chr2R 18480524 intron CG30116 - chr2R 18480637 intron CG30116 - chr2R_7_18480001 chr2R_18480001 RAL-843 1278 chr2R 18484516 18484596 chr2R 18484666 18484746 20 150 7.0 7.0 7.0 2.5 230 chr2R 18484516 intron CG30116 - chr2R 18484631 intron CG30116 - chr2R 18484746 intron CG30116 - chr2R_20_18480001 chr2R_18480001 RAL-843 1279 chr2R 18486807 18486816 chr2R 18487119 18487128 6 312 23.5 15.0 19.2 0.3 321 chr2R 18486807 intron CG30116 - chr2R 18486968 intron CG30116 - chr2R 18487128 intron CG30116 - chr2R_6_18485001 chr2R_18485001 RAL-843 1280 chr2R 18486821 18486873 chr2R 18487108 18487185 30 306 9.5 13.5 11.5 2.4 364 chr2R 18486821 intron CG30116 - chr2R 18487003 intron CG30116 - chr2R 18487185 intron CG30116 - chr2R_30_18485001 chr2R_18485001 RAL-843 1281 chr2R 18487788 18487828 chr2R 18495289 18495329 blood 18 7499 10.5 5.0 7.8 2.0 7541 chr2R 18487788 intron CG30116 - chr2R 18491558 intron CG30116 - chr2R 18495329 intron CG30116 - chr2R_18_18490001 chr2R_18490001 RAL-843 1282 chr2R 18528149 18528216 chr2R 18528278 18528324 34 128 6.5 8.0 7.2 4.1 175 chr2R 18528149 intron CG10924 + chr2R 18528236 intron CG10924 + chr2R 18528324 intron CG10924 + chr2R_34_18525001 chr2R_18525001 RAL-843 1283 chr2R 18575751 18575825 chr2R 18581986 18582063 3S18 28 6219 10.0 6.0 8.0 3.1 6312 chr2R 18575751 intron GEFmeso - chr2R 18578907 intron GEFmeso - chr2R 18582063 intron GEFmeso - chr2R_28_18575001 chr2R_18575001 RAL-843 1284 chr2R 18590822 18590901 chr2R 18600024 18600045 roo 29 9198 7.5 7.5 7.5 3.4 9223 chr2R 18590822 intron GEFmeso - chr2R 18595434 intron GEFmeso - chr2R 18600045 intron GEFmeso - chr2R_29_18595001 chr2R_18595001 RAL-843 1285 chr2R 18657645 18657666 chr2R 18657968 18657989 17 323 20.0 8.5 14.2 1.1 344 chr2R 18657645 intron SP2637 - chr2R 18657817 intron SP2637 - chr2R 18657989 intron SP2637 - chr2R_17_18655001 chr2R_18655001 RAL-843 1286 chr2R 18657668 18657715 chr2R 18657967 18658038 30 321 10.0 8.5 9.2 2.9 370 chr2R 18657668 intron SP2637 - chr2R 18657853 intron SP2637 - chr2R 18658038 intron SP2637 - chr2R_30_18655001 chr2R_18655001 RAL-843 1287 chr2R 18670231 18670293 chr2R 18670366 18670440 26 132 11.0 10.5 10.8 2.2 209 chr2R 18670231 intron edl - chr2R 18670336 intron edl - chr2R 18670440 intron edl - chr2R_26_18670001 chr2R_18670001 RAL-843 1288 chr2R 18692850 18692919 chr2R 18692987 18693055 15 131 8.5 3.5 6.0 2.1 205 chr2R 18692850 exon Sik3 + chr2R 18692952 intron Sik3 + chr2R 18693055 intron Sik3 + chr2R_15_18690001 chr2R_18690001 RAL-843 1289 chr2R 18738170 18738236 chr2R 18738291 18738362 24 126 1.0 4.5 2.8 6.3 192 chr2R 18738170 intron Hs3st-A + chr2R 18738266 intron Hs3st-A + chr2R 18738362 intron Hs3st-A + chr2R_24_18735001 chr2R_18735001 RAL-843 1290 chr2R 18769601 18769636 chr2R 18769939 18769974 16 336 14.0 0.0 7.0 2.0 373 chr2R 18769601 intron Mctp + chr2R 18769788 intron Mctp + chr2R 18769974 intron Mctp + chr2R_16_18765001 chr2R_18765001 RAL-843 1291 chr2R 18782163 18782182 chr2R 18782290 18782299 6 128 14.5 0.0 7.2 0.7 136 chr2R 18782163 intergenic not near genes chr2R 18782231 intergenic not near genes chr2R 18782299 intergenic not near genes chr2R_6_18780001 chr2R_18780001 RAL-843 1292 chr2R 18808116 18808184 chr2R 18808242 18808310 18 125 6.0 3.0 4.5 3.3 194 chr2R 18808116 intergenic CG15096 - chr2R 18808213 intergenic CG15096 - chr2R 18808310 intergenic CG15096 - chr2R_18_18805001 chr2R_18805001 RAL-843 1293 chr2R 18812687 18812760 chr2R 18812842 18812909 24 152 8.5 5.5 7.0 3.0 222 chr2R 18812687 intron CG15096 - chr2R 18812798 intron CG15096 - chr2R 18812909 intron CG15096 - chr2R_24_18810001 chr2R_18810001 RAL-843 1294 chr2R 18855150 18855168 chr2R 18855280 18855298 4 130 17.5 9.0 13.2 0.3 148 chr2R 18855150 intergenic Jheh1 - chr2R 18855224 intergenic Jheh1 - chr2R 18855298 intergenic Jheh1 -,Jheh2 - chr2R_4_18855001 chr2R_18855001 RAL-843 1295 chr2R 18855179 18855189 chr2R 18855269 18855319 7 120 12.0 8.0 10.0 0.6 140 chr2R 18855179 intergenic Jheh1 - chr2R 18855249 intergenic Jheh1 - chr2R 18855319 intergenic Jheh1 -,Jheh2 - chr2R_7_18855001 chr2R_18855001 RAL-843 1296 chr2R 18855191 18855220 chr2R 18855266 18855325 13 96 8.0 7.5 7.8 1.5 134 chr2R 18855191 intergenic Jheh1 - chr2R 18855258 intergenic Jheh1 - chr2R 18855325 intergenic Jheh1 -,Jheh2 - chr2R_13_18855001 chr2R_18855001 RAL-843 1297 chr2R 18862264 18862405 chr2R 18862397 18862541 8 156 0.0 0.0 0.0 8.0 277 chr2R 18862264 intergenic Jheh3 - chr2R 18862402 intergenic Jheh3 -,CG43069 + chr2R 18862541 intergenic CG43069 +,Jheh3 - chr2R_8_18860001 chr2R_18860001 RAL-843 1298 chr2R 18934661 18934690 chr2R 18934908 18934931 11 247 15.5 8.0 11.8 0.9 270 chr2R 18934661 intron sano + chr2R 18934796 intron sano + chr2R 18934931 intron sano + chr2R_11_18930001 chr2R_18930001 RAL-843 1299 chr2R 18949283 18949332 chr2R 18949426 18949475 11 142 6.0 6.5 6.2 1.5 192 chr2R 18949283 intron sano + chr2R 18949379 intron sano + chr2R 18949475 intron sano + chr2R_11_18945001 chr2R_18945001 RAL-843 1300 chr2R 18953113 18953189 chr2R 18953250 18953325 17 134 7.0 7.0 7.0 2.1 212 chr2R 18953113 intron sano + chr2R 18953219 intron sano + chr2R 18953325 intron sano + chr2R_17_18950001 chr2R_18950001 RAL-843 1301 chr2R 19014588 19014642 chr2R 19014712 19014751 16 128 4.0 9.5 6.8 2.1 163 chr2R 19014588 intergenic not near genes chr2R 19014670 intergenic not near genes chr2R 19014751 intergenic not near genes chr2R_16_19010001 chr2R_19010001 RAL-843 1302 chr2R 19015395 19015419 chr2R 19015526 19015557 14 136 14.0 10.0 12.0 1.1 162 chr2R 19015395 intergenic not near genes chr2R 19015476 intergenic not near genes chr2R 19015557 intergenic not near genes chr2R_14_19015001 chr2R_19015001 RAL-843 1303 chr2R 19015422 19015454 chr2R 19015518 19015592 15 125 5.5 9.0 7.2 1.8 170 chr2R 19015422 intergenic not near genes chr2R 19015507 intergenic not near genes chr2R 19015592 intergenic not near genes chr2R_15_19015001 chr2R_19015001 RAL-843 1304 chr2R 19025258 19025333 chr2R 19025541 19025614 11 278 1.0 7.0 4.0 2.2 356 chr2R 19025258 intron 5-HT1B - chr2R 19025436 intron 5-HT1B - chr2R 19025614 intron 5-HT1B - chr2R_11_19025001 chr2R_19025001 RAL-843 1305 chr2R 19025998 19026061 chr2R 19026188 19026251 18 187 11.0 10.0 10.5 1.6 253 chr2R 19025998 exon 5-HT1B - chr2R 19026124 intron 5-HT1B - chr2R 19026251 intron 5-HT1B - chr2R_18_19025001 chr2R_19025001 RAL-843 1306 chr2R 19042648 19042686 chr2R 19042782 19042806 9 129 17.0 10.5 13.8 0.6 158 chr2R 19042648 intergenic not near genes chr2R 19042727 intergenic not near genes chr2R 19042806 intergenic not near genes chr2R_9_19040001 chr2R_19040001 RAL-843 1307 chr2R 19067687 19067741 chr2R 19067813 19067867 4 126 5.0 0.0 2.5 1.1 180 chr2R 19067687 intron 5-HT1A + chr2R 19067777 intron 5-HT1A + chr2R 19067867 intron 5-HT1A + chr2R_4_19065001 chr2R_19065001 RAL-843 1308 chr2R 19072069 19072123 chr2R 19072185 19072249 13 116 11.5 11.5 11.5 1.0 180 chr2R 19072069 intron 5-HT1A + chr2R 19072159 intron 5-HT1A + chr2R 19072249 intron 5-HT1A + chr2R_13_19070001 chr2R_19070001 RAL-843 1309 chr2R 19103360 19103422 chr2R 19103500 19103554 17 134 6.5 4.0 5.2 2.7 194 chr2R 19103360 intron 5-HT1A + chr2R 19103457 intron 5-HT1A + chr2R 19103554 intron 5-HT1A + chr2R_17_19100001 chr2R_19100001 RAL-843 1310 chr2R 19166981 19167014 chr2R 19168238 19168254 16 1254 4.0 13.5 8.8 1.6 1273 chr2R 19166981 intron CG10737 + chr2R 19167618 intron CG10737 + chr2R 19168254 intron CG10737 + chr2R_16_19165001 chr2R_19165001 RAL-843 1311 chr2R 19168333 19168402 chr2R 19168472 19168538 26 135 10.0 9.5 9.8 2.4 205 chr2R 19168333 intron CG10737 + chr2R 19168436 intron CG10737 + chr2R 19168538 intron CG10737 + chr2R_26_19165001 chr2R_19165001 RAL-843 1312 chr2R 19168696 19168701 chr2R 19168827 19168832 4 131 17.5 8.5 13.0 0.3 136 chr2R 19168696 intron CG10737 + chr2R 19168764 intron CG10737 + chr2R 19168832 intron CG10737 + chr2R_4_19165001 chr2R_19165001 RAL-843 1313 chr2R 19168702 19168763 chr2R 19168823 19168894 18 130 8.5 6.5 7.5 2.1 192 chr2R 19168702 intron CG10737 + chr2R 19168798 intron CG10737 + chr2R 19168894 intron CG10737 + chr2R_18_19165001 chr2R_19165001 RAL-843 1314 chr2R 19300917 19300988 chr2R 19301050 19301121 33 133 0.0 9.0 4.5 6.0 204 chr2R 19300917 intron Tab2 + chr2R 19301019 intron Tab2 + chr2R 19301121 intron Tab2 + chr2R_33_19300001 chr2R_19300001 RAL-843 1315 chr2R 19331194 19331238 chr2R 19331314 19331338 13 126 15.5 10.5 13.0 0.9 144 chr2R 19331194 intron,intron Rgk1 -,CG34045 + chr2R 19331266 intron,intron Rgk1 -,CG34045 + chr2R 19331338 intron,intron Rgk1 -,CG34045 + chr2R_13_19330001 chr2R_19330001 RAL-843 1316 chr2R 19363139 19363219 chr2R 19363265 19363345 14 126 1.0 0.0 0.5 9.3 206 chr2R 19363139 intergenic not near genes chr2R 19363242 intergenic CG10051 + chr2R 19363345 intergenic CG10051 + chr2R_14_19360001 chr2R_19360001 RAL-843 1317 chr2R 19373650 19373670 chr2R 19373874 19373901 11 224 18.0 9.5 13.8 0.7 251 chr2R 19373650 5` UTR CG9416 - chr2R 19373776 intergenic CG9416 - chr2R 19373901 intergenic CG9416 - chr2R_11_19370001 chr2R_19370001 RAL-843 1318 chr2R 19373672 19373713 chr2R 19373869 19373934 20 226 11.0 7.5 9.2 2.0 262 chr2R 19373672 5` UTR CG9416 - chr2R 19373803 intergenic CG9416 - chr2R 19373934 intergenic CG9416 - chr2R_20_19370001 chr2R_19370001 RAL-843 1319 chr2R 19385101 19385133 chr2R 19385694 19385726 14 593 0.0 11.5 5.8 2.1 625 chr2R 19385101 intergenic CG10073 + chr2R 19385414 intergenic CG10073 + chr2R 19385726 intergenic CG10081 + chr2R_14_19385001 chr2R_19385001 RAL-843 1320 chr2R 19533504 19533576 chr2R 19533630 19533699 20 109 11.5 10.0 10.8 1.7 195 chr2R 19533504 intron sm - chr2R 19533602 intron sm - chr2R 19533699 intron sm - chr2R_20_19530001 chr2R_19530001 RAL-843 1321 chr2R 19535050 19535130 chr2R 19535314 19535388 32 258 5.0 4.5 4.8 5.5 338 chr2R 19535050 intron sm - chr2R 19535219 intron sm - chr2R 19535388 intron sm - chr2R_32_19535001 chr2R_19535001 RAL-843 1322 chr2R 19714695 19714737 chr2R 19714821 19714863 14 126 1.5 11.5 6.5 1.9 168 chr2R 19714695 3` UTR CG8517 + chr2R 19714779 3` UTR CG8517 + chr2R 19714863 3` UTR CG8517 + chr2R_14_19710001 chr2R_19710001 RAL-843 1323 chr2R 19715793 19715854 chr2R 19723332 19723393 blood 30 7538 8.5 8.0 8.2 3.3 7600 chr2R 19715793 intergenic not near genes chr2R 19719593 intergenic not near genes chr2R 19723393 intergenic not near genes chr2R_30_19715001 chr2R_19715001 RAL-843 1324 chr2R 19723748 19723806 chr2R 19724102 19724166 30 359 13.5 4.0 8.8 3.1 418 chr2R 19723748 intergenic not near genes chr2R 19723957 intergenic not near genes chr2R 19724166 intergenic not near genes chr2R_30_19720001 chr2R_19720001 RAL-843 1325 chr2R 19776565 19776570 chr2R 19779938 19779943 jockey 5 3373 18.0 12.5 15.2 0.3 3378 chr2R 19776565 intergenic not near genes chr2R 19778254 intergenic not near genes chr2R 19779943 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-843 1326 chr2R 19776571 19776612 chr2R 19779927 19779985 jockey 14 3372 8.5 10.0 9.2 1.4 3414 chr2R 19776571 intergenic not near genes chr2R 19778278 intergenic not near genes chr2R 19779985 intergenic not near genes chr2R_14_19775001 chr2R_19775001 RAL-843 1327 chr2R 19802663 19802690 chr2R 19802797 19802824 9 134 2.0 8.5 5.2 1.5 161 chr2R 19802663 intergenic not near genes chr2R 19802744 intergenic not near genes chr2R 19802824 intergenic not near genes chr2R_9_19800001 chr2R_19800001 RAL-843 1328 chr2R 19848031 19848099 chr2R 19848168 19848236 27 137 8.0 9.5 8.8 2.8 205 chr2R 19848031 intergenic not near genes chr2R 19848134 intergenic not near genes chr2R 19848236 intergenic not near genes chr2R_27_19845001 chr2R_19845001 RAL-843 1329 chr2R 19861112 19861181 chr2R 19861250 19861283 19 134 11.0 9.0 10.0 1.7 171 chr2R 19861112 intergenic CR44571 + chr2R 19861198 intergenic not near genes chr2R 19861283 intergenic not near genes chr2R_19_19860001 chr2R_19860001 RAL-843 1330 chr2R 19914806 19914858 chr2R 19922268 19922320 mdg1 16 7462 8.0 9.0 8.5 1.7 7514 chr2R 19914806 intergenic not near genes chr2R 19918563 intergenic not near genes chr2R 19922320 intergenic not near genes chr2R_16_19915001 chr2R_19915001 RAL-843 1331 chr2R 19943246 19943281 chr2R 19943381 19943406 16 134 0.0 7.0 3.5 3.6 160 chr2R 19943246 intergenic not near genes chr2R 19943326 intergenic not near genes chr2R 19943406 intergenic not near genes chr2R_16_19940001 chr2R_19940001 RAL-843 1332 chr2R 19957391 19957400 chr2R 19962643 19962646 copia 4 5250 12.5 8.0 10.2 0.4 5255 chr2R 19957391 intergenic CG44623 + chr2R 19960018 intergenic not near genes chr2R 19962646 intergenic not near genes chr2R_4_19960001 chr2R_19960001 RAL-843 1333 chr2R 19957403 19957460 chr2R 19962635 19962689 copia 24 5243 4.5 7.5 6.0 3.4 5286 chr2R 19957403 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962689 intergenic not near genes chr2R_24_19960001 chr2R_19960001 RAL-843 1334 chr2R 19969764 19969830 chr2R 19969896 19969962 28 130 6.0 4.0 5.0 4.7 198 chr2R 19969764 intergenic not near genes chr2R 19969863 intergenic not near genes chr2R 19969962 intergenic not near genes chr2R_28_19965001 chr2R_19965001 RAL-843 1335 chr2R 20030951 20031021 chr2R 20031084 20031164 35 139 8.0 9.0 8.5 3.7 213 chr2R 20030951 intergenic not near genes chr2R 20031058 intergenic not near genes chr2R 20031164 intergenic not near genes chr2R_35_20030001 chr2R_20030001 RAL-843 1336 chr2R 20031867 20031936 chr2R 20032013 20032082 37 145 7.0 9.0 8.0 4.1 215 chr2R 20031867 intergenic not near genes chr2R 20031974 intergenic not near genes chr2R 20032082 intergenic not near genes chr2R_37_20030001 chr2R_20030001 RAL-843 1337 chr2R 20069209 20069234 chr2R 20071889 20071914 opus 6 2680 12.0 10.0 11.0 0.5 2705 chr2R 20069209 intergenic not near genes chr2R 20070562 intergenic not near genes chr2R 20071914 intergenic not near genes chr2R_6_20070001 chr2R_20070001 RAL-843 1338 chr2R 20069236 20069271 chr2R 20071876 20071951 opus 10 2671 7.5 6.0 6.8 1.3 2715 chr2R 20069236 intergenic not near genes chr2R 20070594 intergenic not near genes chr2R 20071951 intergenic not near genes chr2R_10_20070001 chr2R_20070001 RAL-843 1339 chr2R 20080606 20080625 chr2R 20080716 20080746 13 125 3.5 18.5 11.0 1.1 140 chr2R 20080606 intergenic not near genes chr2R 20080676 intergenic not near genes chr2R 20080746 intergenic not near genes chr2R_13_20080001 chr2R_20080001 RAL-843 1340 chr2R 20087978 20088021 chr2R 20088136 20088179 1360 6 158 5.0 5.5 5.2 1.0 201 chr2R 20087978 intergenic not near genes chr2R 20088078 intergenic not near genes chr2R 20088179 intergenic not near genes chr2R_6_20085001 chr2R_20085001 RAL-843 1341 chr2R 20118833 20118904 chr2R 20118963 20118989 23 132 1.5 6.0 3.8 4.8 156 chr2R 20118833 intergenic not near genes chr2R 20118911 intergenic not near genes chr2R 20118989 intergenic not near genes chr2R_23_20115001 chr2R_20115001 RAL-843 1342 chr2R 20223906 20223985 chr2R 20224041 20224120 32 134 8.0 7.5 7.8 3.6 214 chr2R 20223906 intergenic not near genes chr2R 20224013 intergenic not near genes chr2R 20224120 intergenic not near genes chr2R_32_20220001 chr2R_20220001 RAL-843 1343 chr2R 20338713 20338767 chr2R 20338843 20338896 9 130 7.5 0.0 3.8 1.9 183 chr2R 20338713 intergenic not near genes chr2R 20338804 intergenic not near genes chr2R 20338896 intergenic not near genes chr2R_9_20335001 chr2R_20335001 RAL-843 1344 chr2R 20368467 20368496 chr2R 20377679 20377708 roo 8 9212 10.5 7.5 9.0 0.8 9241 chr2R 20368467 intergenic not near genes chr2R 20373088 intergenic not near genes chr2R 20377708 intergenic not near genes chr2R_8_20370001 chr2R_20370001 RAL-843 1345 chr2R 20422525 20422593 chr2R 20422654 20422693 11 126 6.0 6.0 6.0 1.6 168 chr2R 20422525 intergenic not near genes chr2R 20422609 intergenic not near genes chr2R 20422693 intergenic not near genes chr2R_11_20420001 chr2R_20420001 RAL-843 1346 chr2R 20424382 20424445 chr2R 20424497 20424565 32 129 9.5 10.0 9.8 3.0 183 chr2R 20424382 5` UTR CG12484 + chr2R 20424474 5` UTR CG12484 + chr2R 20424565 5` UTR CG12484 + chr2R_32_20420001 chr2R_20420001 RAL-843 1347 chr2R 20434046 20434106 chr2R 20434177 20434235 8 130 0.0 7.5 3.8 1.7 189 chr2R 20434046 intron CG12484 + chr2R 20434140 intron CG12484 + chr2R 20434235 intron CG12484 + chr2R_8_20430001 chr2R_20430001 RAL-843 1348 chr2R 20439012 20439088 chr2R 20439145 20439181 22 119 6.5 6.0 6.2 3.1 169 chr2R 20439012 intron CG12484 + chr2R 20439096 intron CG12484 + chr2R 20439181 intron CG12484 + chr2R_22_20435001 chr2R_20435001 RAL-843 1349 chr2R 20489852 20489912 chr2R 20490005 20490065 19 153 5.0 9.5 7.2 2.3 213 chr2R 20489852 intergenic not near genes chr2R 20489958 intergenic not near genes chr2R 20490065 intergenic not near genes chr2R_19_20485001 chr2R_20485001 RAL-843 1350 chr2R 20506919 20506934 chr2R 20507045 20507060 4 126 4.5 0.0 2.2 1.2 141 chr2R 20506919 intergenic CR44645 + chr2R 20506990 intergenic CR44645 + chr2R 20507060 intergenic CR44645 + chr2R_4_20505001 chr2R_20505001 RAL-843 1351 chr2R 20523000 20523067 chr2R 20523152 20523207 35 149 6.5 11.5 9.0 3.5 207 chr2R 20523000 intergenic not near genes chr2R 20523104 intergenic not near genes chr2R 20523207 intergenic not near genes chr2R_35_20520001 chr2R_20520001 RAL-843 1352 chr2R 20528707 20528719 chr2R 20528931 20528932 4 219 21.5 8.5 15.0 0.2 225 chr2R 20528707 exon CG30151 - chr2R 20528820 exon CG30151 - chr2R 20528932 exon CG30151 - chr2R_4_20525001 chr2R_20525001 RAL-843 1353 chr2R 20528721 20528778 chr2R 20528928 20528974 26 212 7.0 8.5 7.8 3.0 253 chr2R 20528721 exon CG30151 - chr2R 20528848 exon CG30151 - chr2R 20528974 exon CG30151 - chr2R_26_20525001 chr2R_20525001 RAL-843 1354 chr2R 20555283 20555361 chr2R 20555417 20555501 8 139 0.0 3.0 1.5 3.2 218 chr2R 20555283 intergenic not near genes chr2R 20555392 intergenic not near genes chr2R 20555501 intergenic not near genes chr2R_8_20555001 chr2R_20555001 RAL-843 1355 chr2R 20571252 20571278 chr2R 20571396 20571426 8 144 17.0 0.0 8.5 0.8 174 chr2R 20571252 intron qsm - chr2R 20571339 intron qsm - chr2R 20571426 intron qsm - chr2R_8_20570001 chr2R_20570001 RAL-843 1356 chr2R 20572522 20572587 chr2R 20572662 20572727 26 140 11.0 5.5 8.2 2.8 205 chr2R 20572522 intron qsm - chr2R 20572624 intron qsm - chr2R 20572727 intron qsm - chr2R_26_20570001 chr2R_20570001 RAL-843 1357 chr2R 20667320 20667341 chr2R 20667482 20667503 9 161 18.5 17.0 17.8 0.5 183 chr2R 20667320 intergenic Fem-1 -,exu - chr2R 20667412 intergenic exu -,Fem-1 - chr2R 20667503 3` UTR exu - chr2R_9_20665001 chr2R_20665001 RAL-843 1358 chr2R 20700679 20700745 chr2R 20700806 20700872 12 126 12.5 17.0 14.8 0.8 193 chr2R 20700679 intron dpr + chr2R 20700776 intron dpr + chr2R 20700872 intron dpr + chr2R_12_20700001 chr2R_20700001 RAL-843 1359 chr2R 20731260 20731339 chr2R 20731402 20731478 13 139 14.5 14.5 14.5 0.8 218 chr2R 20731260 intron dpr + chr2R 20731369 intron dpr + chr2R 20731478 intron dpr + chr2R_13_20730001 chr2R_20730001 RAL-843 1360 chr2R 20739405 20739472 chr2R 20744223 20744264 F-element 25 4814 4.0 9.0 6.5 3.3 4859 chr2R 20739405 intron dpr + chr2R 20741834 intron dpr + chr2R 20744264 intron dpr + chr2R_25_20740001 chr2R_20740001 RAL-843 1361 chr2R 20757435 20757457 chr2R 20757550 20757584 11 123 8.0 15.5 11.8 0.9 149 chr2R 20757435 intergenic not near genes chr2R 20757510 intergenic not near genes chr2R 20757584 intergenic not near genes chr2R_11_20755001 chr2R_20755001 RAL-843 1362 chr2R 20783261 20783323 chr2R 20788083 20788145 F-element 26 4822 7.0 8.0 7.5 3.1 4884 chr2R 20783261 intergenic not near genes chr2R 20785703 intergenic not near genes chr2R 20788145 intergenic CG43666 - chr2R_26_20785001 chr2R_20785001 RAL-843 1363 chr2R 20830506 20830560 chr2R 20830635 20830688 17 129 19.0 18.0 18.5 0.9 182 chr2R 20830506 intron,intron insc -,sktl - chr2R 20830597 intron,intron insc -,sktl - chr2R 20830688 intron,intron insc -,sktl - chr2R_17_20830001 chr2R_20830001 RAL-843 1364 chr2R 20863085 20863118 chr2R 20863221 20863254 4 134 12.0 12.5 12.2 0.3 169 chr2R 20863085 intergenic not near genes chr2R 20863170 intergenic not near genes chr2R 20863254 intergenic not near genes chr2R_4_20860001 chr2R_20860001 RAL-843 1365 chr2R 20870920 20870946 chr2R 20871178 20871196 5 256 0.0 10.5 5.2 0.8 276 chr2R 20870920 intron Ipk1 + chr2R 20871058 intron Ipk1 + chr2R 20871196 intron Ipk1 + chr2R_5_20870001 chr2R_20870001 RAL-843 1366 chr2R 20915053 20915109 chr2R 20915282 20915346 4 229 8.5 18.0 13.2 0.3 293 chr2R 20915053 intergenic not near genes chr2R 20915200 intergenic not near genes chr2R 20915346 intergenic not near genes chr2R_4_20915001 chr2R_20915001 RAL-843 1367 chr2R 20942346 20942359 chr2R 20942479 20942492 5 133 1.5 9.5 5.5 0.8 146 chr2R 20942346 intergenic not near genes chr2R 20942419 intergenic not near genes chr2R 20942492 intergenic not near genes chr2R_5_20940001 chr2R_20940001 RAL-843 1368 chr2R 20950280 20950344 chr2R 20950432 20950496 13 152 15.5 10.5 13.0 0.9 216 chr2R 20950280 exon CG33704 + chr2R 20950388 intron CG33704 + chr2R 20950496 intron CG33704 + chr2R_13_20950001 chr2R_20950001 RAL-843 1369 chr2R 20962868 20962935 chr2R 20963016 20963083 7 148 17.0 12.5 14.8 0.4 215 chr2R 20962868 intergenic not near genes chr2R 20962976 intergenic not near genes chr2R 20963083 intergenic not near genes chr2R_7_20960001 chr2R_20960001 RAL-843 1370 chr2R 20966977 20967056 chr2R 20967104 20967183 13 127 5.5 2.0 3.8 2.7 206 chr2R 20966977 intergenic not near genes chr2R 20967080 intergenic not near genes chr2R 20967183 intergenic not near genes chr2R_13_20965001 chr2R_20965001 RAL-843 1371 chr2R 21027636 21027682 chr2R 21027780 21027826 15 140 21.0 15.5 18.2 0.8 190 chr2R 21027636 intergenic not near genes chr2R 21027731 intergenic not near genes chr2R 21027826 intergenic not near genes chr2R_15_21025001 chr2R_21025001 RAL-843 1372 chr2R 21060586 21060655 chr2R 21060712 21060781 19 126 16.5 16.0 16.2 1.1 195 chr2R 21060586 intergenic CG15653 -,mRpL54 + chr2R 21060684 intergenic mRpL54 +,CG15653 - chr2R 21060781 intergenic mRpL54 +,CG15653 - chr2R_19_21060001 chr2R_21060001 RAL-843 1373 chr2R 21079279 21079355 chr2R 21079405 21079481 16 125 17.5 18.5 18.0 0.8 202 chr2R 21079279 intron Treh + chr2R 21079380 intron Treh + chr2R 21079481 intron Treh + chr2R_16_21075001 chr2R_21075001 RAL-843 1374 chr2R 21083115 21083190 chr2R 21083251 21083326 26 132 22.0 19.5 20.8 1.2 211 chr2R 21083115 intron Treh + chr2R 21083220 intron Treh + chr2R 21083326 intron Treh + chr2R_26_21080001 chr2R_21080001 RAL-843 1375 chr2R 21103489 21103527 chr2R 21103619 21103657 16 129 17.0 10.0 13.5 1.1 168 chr2R 21103489 intron ktub + chr2R 21103573 intron ktub + chr2R 21103657 intron ktub + chr2R_16_21100001 chr2R_21100001 RAL-843 1376 chr2R 21113429 21113479 chr2R 21113568 21113618 6 139 34.0 33.0 33.5 0.2 189 chr2R 21113429 intron ktub + chr2R 21113524 intron ktub + chr2R 21113618 intron ktub + chr2R_6_21110001 chr2R_21110001 RAL-843 1377 chr2R 21117421 21117488 chr2R 21117827 21117872 10 405 29.5 25.5 27.5 0.4 451 chr2R 21117421 intron ktub + chr2R 21117646 intron ktub + chr2R 21117872 intron ktub + chr2R_10_21115001 chr2R_21115001 RAL-843 1378 chr2R 21151106 21151143 chr2R 21153768 21153826 opus 20 2681 0.5 7.5 4.0 4.0 2720 chr2R 21151106 intron CG30389 - chr2R 21152466 intron CG30389 - chr2R 21153826 intron CG30389 - chr2R_20_21150001 chr2R_21150001 RAL-843 1379 chr2R 21188176 21188242 chr2R 21188307 21188373 21 131 10.0 7.5 8.8 2.1 197 chr2R 21188176 exon tud + chr2R 21188274 intron tud + chr2R 21188373 exon tud + chr2R_21_21185001 chr2R_21185001 RAL-843 1380 chr2R 21232601 21232680 chr2R 21232821 21232901 9 220 5.0 0.0 2.5 2.6 300 chr2R 21232601 intron ASPP - chr2R 21232751 intron ASPP - chr2R 21232901 intron ASPP - chr2R_9_21230001 chr2R_21230001 RAL-843 1381 chr2R 21253796 21253808 chr2R 21253943 21253955 4 147 1.0 10.5 5.8 0.6 159 chr2R 21253796 intergenic not near genes chr2R 21253876 intergenic not near genes chr2R 21253955 intergenic not near genes chr2R_4_21250001 chr2R_21250001 RAL-843 1382 chr2R 21253810 21253842 chr2R 21253941 21253949 11 141 1.0 10.5 5.8 1.6 139 chr2R 21253810 intergenic not near genes chr2R 21253880 intergenic not near genes chr2R 21253949 intergenic not near genes chr2R_11_21250001 chr2R_21250001 RAL-843 1383 chr2R 21259622 21259664 chr2R 21259751 21259775 16 119 12.5 17.0 14.8 1.0 153 chr2R 21259622 intron Rgk3 + chr2R 21259698 intron Rgk3 + chr2R 21259775 intron Rgk3 + chr2R_16_21255001 chr2R_21255001 RAL-843 1384 chr2R 21285382 21285436 chr2R 21285509 21285563 20 126 10.5 15.5 13.0 1.4 181 chr2R 21285382 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285472 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285563 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_20_21285001 chr2R_21285001 RAL-843 1385 chr2R 21381890 21381919 chr2R 21382026 21382056 15 136 13.0 0.0 6.5 2.0 166 chr2R 21381890 intergenic not near genes chr2R 21381973 intergenic not near genes chr2R 21382056 intergenic not near genes chr2R_15_21380001 chr2R_21380001 RAL-843 1386 chr2R 21408324 21408406 chr2R 21408466 21408548 20 142 6.0 0.5 3.2 4.8 224 chr2R 21408324 intron Sdc - chr2R 21408436 intron Sdc - chr2R 21408548 intron Sdc - chr2R_20_21405001 chr2R_21405001 RAL-843 1387 chr2R 21417227 21417233 chr2R 21417379 21417385 5 152 21.0 0.0 10.5 0.4 158 chr2R 21417227 intron Sdc - chr2R 21417306 intron Sdc - chr2R 21417385 intron Sdc - chr2R_5_21415001 chr2R_21415001 RAL-843 1388 chr2R 21460137 21460150 chr2R 21460283 21460296 4 146 0.0 19.5 9.8 0.4 159 chr2R 21460137 intron Sdc - chr2R 21460216 intron Sdc - chr2R 21460296 intron Sdc - chr2R_4_21460001 chr2R_21460001 RAL-843 1389 chr2R 21505717 21505791 chr2R 21505848 21505921 42 131 8.5 7.5 8.0 4.7 204 chr2R 21505717 intron MESK2 + chr2R 21505819 intron MESK2 + chr2R 21505921 intron MESK2 + chr2R_42_21505001 chr2R_21505001 RAL-843 1390 chr2R 21540683 21540695 chr2R 21540951 21540963 7 268 4.5 6.5 5.5 1.1 280 chr2R 21540683 intron Egfr + chr2R 21540823 intron Egfr + chr2R 21540963 intron Egfr + chr2R_7_21540001 chr2R_21540001 RAL-843 1391 chr2R 21592818 21592853 chr2R 21592926 21592936 18 110 12.5 9.0 10.8 1.5 118 chr2R 21592818 intergenic not near genes chr2R 21592877 intergenic not near genes chr2R 21592936 intergenic not near genes chr2R_18_21590001 chr2R_21590001 RAL-843 1392 chr2R 21648013 21648030 chr2R 21648139 21648156 9 123 29.5 17.0 23.2 0.4 143 chr2R 21648013 intron CG10082 + chr2R 21648084 intron CG10082 + chr2R 21648156 intron CG10082 + chr2R_9_21645001 chr2R_21645001 RAL-843 1393 chr2R 21648031 21648036 chr2R 21648137 21648142 5 114 28.0 16.0 22.0 0.2 111 chr2R 21648031 intron CG10082 + chr2R 21648086 intron CG10082 + chr2R 21648142 intron CG10082 + chr2R_5_21645001 chr2R_21645001 RAL-843 1394 chr2R 21648042 21648062 chr2R 21648128 21648162 6 111 21.0 18.5 19.8 0.3 120 chr2R 21648042 intron CG10082 + chr2R 21648102 intron CG10082 + chr2R 21648162 intron CG10082 + chr2R_6_21645001 chr2R_21645001 RAL-843 1395 chr2R 21699872 21699943 chr2R 21700010 21700081 17 138 7.0 8.0 7.5 2.0 209 chr2R 21699872 intron HmgZ - chr2R 21699976 intron HmgZ - chr2R 21700081 intron HmgZ - chr2R_17_21695001 chr2R_21695001 RAL-843 1396 chr2R 21721532 21721605 chr2R 21721670 21721743 31 134 5.5 9.5 7.5 3.6 211 chr2R 21721532 intron LBR + chr2R 21721638 intron LBR + chr2R 21721743 intron LBR + chr2R_31_21720001 chr2R_21720001 RAL-843 1397 chr2R 21725185 21725220 chr2R 21725312 21725347 13 127 0.0 11.5 5.8 1.9 162 chr2R 21725185 intergenic not near genes chr2R 21725266 intergenic not near genes chr2R 21725347 intergenic not near genes chr2R_13_21725001 chr2R_21725001 RAL-843 1398 chr2R 21732138 21732166 chr2R 21732273 21732300 10 135 0.0 16.5 8.2 1.1 162 chr2R 21732138 intergenic not near genes chr2R 21732219 intergenic not near genes chr2R 21732300 intergenic not near genes chr2R_10_21730001 chr2R_21730001 RAL-843 1399 chr2R 21738235 21738308 chr2R 21747445 21747458 roo 10 9197 4.5 5.0 4.8 1.7 9223 chr2R 21738235 intergenic not near genes chr2R 21742846 intergenic not near genes chr2R 21747458 intergenic not near genes chr2R_10_21740001 chr2R_21740001 RAL-843 1400 chr2R 21753041 21753109 chr2R 21753576 21753641 roo 37 534 11.0 10.5 10.8 3.1 600 chr2R 21753041 intergenic not near genes chr2R 21753341 intergenic not near genes chr2R 21753641 intergenic not near genes chr2R_37_21750001 chr2R_21750001 RAL-843 1401 chr2R 21783534 21783570 chr2R 21783661 21783697 11 127 9.0 7.5 8.2 1.2 163 chr2R 21783534 intergenic not near genes chr2R 21783616 intergenic not near genes chr2R 21783697 intergenic not near genes chr2R_11_21780001 chr2R_21780001 RAL-843 1402 chr2R 21795052 21795118 chr2R 21795207 21795273 21 155 7.5 10.0 8.8 2.1 221 chr2R 21795052 intergenic not near genes chr2R 21795162 intergenic not near genes chr2R 21795273 intergenic not near genes chr2R_21_21795001 chr2R_21795001 RAL-843 1403 chr2R 21802379 21802449 chr2R 21802520 21802590 20 140 6.5 7.0 6.8 2.6 211 chr2R 21802379 intergenic not near genes chr2R 21802484 intergenic not near genes chr2R 21802590 intergenic not near genes chr2R_20_21800001 chr2R_21800001 RAL-843 1404 chr2R 21809474 21809512 chr2R 21817764 21817802 roo 13 8290 7.0 7.5 7.2 1.6 8328 chr2R 21809474 intergenic not near genes chr2R 21813638 intergenic not near genes chr2R 21817802 intergenic not near genes chr2R_13_21810001 chr2R_21810001 RAL-843 1405 chr2R 21830170 21830233 chr2R 21830299 21830362 20 129 7.0 7.0 7.0 2.5 192 chr2R 21830170 intron CG13492 - chr2R 21830266 intron CG13492 - chr2R 21830362 intron CG13492 - chr2R_20_21830001 chr2R_21830001 RAL-843 1406 chr2R 21831122 21831127 chr2R 21831248 21831251 4 127 0.0 10.5 5.2 0.6 129 chr2R 21831122 intron CG13492 - chr2R 21831186 intron CG13492 - chr2R 21831251 intron CG13492 - chr2R_4_21830001 chr2R_21830001 RAL-843 1407 chr2R 21841428 21841509 chr2R 21841563 21841616 24 132 4.0 6.5 5.2 3.9 188 chr2R 21841428 intergenic not near genes chr2R 21841522 intergenic not near genes chr2R 21841616 intergenic not near genes chr2R_24_21840001 chr2R_21840001 RAL-843 1408 chr2R 21857298 21857370 chr2R 21857438 21857511 21 138 11.0 5.5 8.2 2.3 213 chr2R 21857298 intergenic not near genes chr2R 21857404 intergenic not near genes chr2R 21857511 intergenic not near genes chr2R_21_21855001 chr2R_21855001 RAL-843 1409 chr2R 21860853 21860877 chr2R 21860980 21860994 7 126 18.0 17.0 17.5 0.4 141 chr2R 21860853 exon CG9294 + chr2R 21860924 exon CG9294 + chr2R 21860994 exon CG9294 + chr2R_7_21860001 chr2R_21860001 RAL-843 1410 chr2R 21868962 21868986 chr2R 21869102 21869126 6 140 14.5 0.0 7.2 0.7 164 chr2R 21868962 intergenic not near genes chr2R 21869044 intergenic not near genes chr2R 21869126 intergenic not near genes chr2R_6_21865001 chr2R_21865001 RAL-843 1411 chr2R 21888278 21888307 chr2R 21888419 21888447 9 139 5.5 14.0 9.8 0.8 169 chr2R 21888278 intron Fili + chr2R 21888362 intron Fili + chr2R 21888447 intron Fili + chr2R_9_21885001 chr2R_21885001 RAL-843 1412 chr2R 21906224 21906300 chr2R 21906375 21906451 26 151 8.0 5.5 6.8 3.3 227 chr2R 21906224 intron Fili + chr2R 21906338 intron Fili + chr2R 21906451 intron Fili + chr2R_26_21905001 chr2R_21905001 RAL-843 1413 chr2R 21916067 21916103 chr2R 21916194 21916230 7 127 6.0 0.0 3.0 1.8 163 chr2R 21916067 intron Fili + chr2R 21916148 intron Fili + chr2R 21916230 intron Fili + chr2R_7_21915001 chr2R_21915001 RAL-843 1414 chr2R 21917315 21917382 chr2R 21917433 21917494 30 119 4.5 9.5 7.0 3.8 179 chr2R 21917315 intron Fili + chr2R 21917404 intron Fili + chr2R 21917494 intron Fili + chr2R_30_21915001 chr2R_21915001 RAL-843 1415 chr2R 21963155 21963218 chr2R 21963290 21963353 24 134 8.0 12.0 10.0 2.2 198 chr2R 21963155 intergenic not near genes chr2R 21963254 intergenic not near genes chr2R 21963353 intergenic not near genes chr2R_24_21960001 chr2R_21960001 RAL-843 1416 chr2R 21966502 21966530 chr2R 21966640 21966668 11 137 11.5 0.0 5.8 1.6 166 chr2R 21966502 intron ppk9 + chr2R 21966585 intron ppk9 + chr2R 21966668 intron ppk9 + chr2R_11_21965001 chr2R_21965001 RAL-843 1417 chr2R 22003066 22003116 chr2R 22003182 22003252 13 127 7.0 1.0 4.0 2.6 186 chr2R 22003066 intron CG34370 - chr2R 22003159 intron CG34370 - chr2R 22003252 intron CG34370 - chr2R_13_22000001 chr2R_22000001 RAL-843 1418 chr2R 22029475 22029510 chr2R 22029603 22029633 13 128 11.0 0.0 5.5 2.0 158 chr2R 22029475 intron CG34370 - chr2R 22029554 intron CG34370 - chr2R 22029633 intron CG34370 - chr2R_13_22025001 chr2R_22025001 RAL-843 1419 chr2R 22037729 22037805 chr2R 22037861 22037936 14 130 7.5 0.5 4.0 2.8 207 chr2R 22037729 intron CG34370 - chr2R 22037832 intron CG34370 - chr2R 22037936 intron CG34370 - chr2R_14_22035001 chr2R_22035001 RAL-843 1420 chr2R 22185624 22185707 chr2R 22185773 22185856 12 149 5.0 0.5 2.8 3.2 232 chr2R 22185624 exon MED16 + chr2R 22185740 3` UTR MED16 + chr2R 22185856 3` UTR MED16 + chr2R_12_22185001 chr2R_22185001 RAL-843 1421 chr2R 22189394 22189463 chr2R 22189572 22189640 27 177 7.5 4.5 6.0 3.9 246 chr2R 22189394 3` UTR Vps35 + chr2R 22189517 3` UTR Vps35 + chr2R 22189640 3` UTR Vps35 + chr2R_27_22185001 chr2R_22185001 RAL-843 1422 chr2R 22312729 22312804 chr2R 22312905 22312980 38 174 7.5 7.0 7.2 4.6 251 chr2R 22312729 intergenic CR44758 + chr2R 22312854 intergenic CR44758 + chr2R 22312980 intron CR44758 + chr2R_38_22310001 chr2R_22310001 RAL-843 1423 chr2R 22349663 22349677 chr2R 22351482 22351509 jockey 8 1830 23.0 11.0 17.0 0.4 1846 chr2R 22349663 intron Liprin-gamma - chr2R 22350586 intron Liprin-gamma - chr2R 22351509 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-843 1424 chr2R 22349680 22349710 chr2R 22351474 22351496 jockey 14 1821 15.0 9.5 12.2 1.1 1816 chr2R 22349680 intron Liprin-gamma - chr2R 22350588 intron Liprin-gamma - chr2R 22351496 intron Liprin-gamma - chr2R_14_22350001 chr2R_22350001 RAL-843 1425 chr2R 22353105 22353110 chr2R 22353260 22353265 5 155 14.5 7.5 11.0 0.4 160 chr2R 22353105 intron Liprin-gamma - chr2R 22353185 intron Liprin-gamma - chr2R 22353265 intron Liprin-gamma - chr2R_5_22350001 chr2R_22350001 RAL-843 1426 chr2R 22353114 22353173 chr2R 22353259 22353328 21 149 8.0 7.5 7.8 2.4 214 chr2R 22353114 intron Liprin-gamma - chr2R 22353221 intron Liprin-gamma - chr2R 22353328 intron Liprin-gamma - chr2R_21_22350001 chr2R_22350001 RAL-843 1427 chr2R 22360340 22360346 chr2R 22360823 22360829 jockey 4 483 23.0 10.0 16.5 0.2 489 chr2R 22360340 intron Liprin-gamma - chr2R 22360584 intron Liprin-gamma - chr2R 22360829 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-843 1428 chr2R 22370724 22370783 chr2R 22370851 22370910 14 127 1.5 4.0 2.8 3.7 186 chr2R 22370724 intron Liprin-gamma - chr2R 22370817 intron Liprin-gamma - chr2R 22370910 intron Liprin-gamma - chr2R_14_22370001 chr2R_22370001 RAL-843 1429 chr2R 22374593 22374638 chr2R 22374729 22374775 18 136 4.5 4.5 4.5 3.3 182 chr2R 22374593 3` UTR CR44759 - chr2R 22374684 3` UTR CR44759 - chr2R 22374775 3` UTR CR44759 - chr2R_18_22370001 chr2R_22370001 RAL-843 1430 chr2R 22377767 22377834 chr2R 22377897 22377968 20 133 10.5 6.0 8.2 2.2 201 chr2R 22377767 3` UTR Rtf1 + chr2R 22377868 3` UTR Rtf1 + chr2R 22377968 3` UTR Rtf1 + chr2R_20_22375001 chr2R_22375001 RAL-843 1431 chr2R 22380313 22380394 chr2R 22380454 22380535 12 140 3.5 0.0 1.8 4.3 222 chr2R 22380313 intron wrapper + chr2R 22380424 intron wrapper + chr2R 22380535 intron wrapper + chr2R_12_22380001 chr2R_22380001 RAL-843 1432 chr2R 22411456 22411526 chr2R 22411584 22411654 17 128 7.5 9.5 8.5 1.8 198 chr2R 22411456 5` UTR qkr58E-3 - chr2R 22411555 intergenic qkr58E-3 -,Mes4 + chr2R 22411654 intergenic qkr58E-3 -,Mes4 + chr2R_17_22410001 chr2R_22410001 RAL-843 1433 chr2R 22460332 22460405 chr2R 22460461 22460534 32 129 6.0 8.5 7.2 3.9 202 chr2R 22460332 intron CG10384 + chr2R 22460433 intron CG10384 + chr2R 22460534 intron CG10384 + chr2R_32_22460001 chr2R_22460001 RAL-843 1434 chr2R 22465274 22465310 chr2R 22465517 22465553 BS 16 243 19.0 9.0 14.0 1.1 279 chr2R 22465274 intron CG10384 + chr2R 22465414 intron CG10384 + chr2R 22465553 intron CG10384 + chr2R_16_22465001 chr2R_22465001 RAL-843 1435 chr2R 22506667 22506737 chr2R 22506795 22506864 12 128 4.5 7.5 6.0 1.7 197 chr2R 22506667 intron px - chr2R 22506766 intron px - chr2R 22506864 intron px - chr2R_12_22505001 chr2R_22505001 RAL-843 1436 chr2R 22523011 22523076 chr2R 22523137 22523186 20 124 8.0 7.0 7.5 2.4 175 chr2R 22523011 intron px - chr2R 22523098 intron px - chr2R 22523186 intron px - chr2R_20_22520001 chr2R_22520001 RAL-843 1437 chr2R 22525715 22525783 chr2R 22529310 22529346 jockey 16 3600 4.0 7.5 5.8 2.4 3631 chr2R 22525715 intron px - chr2R 22527530 intron px - chr2R 22529346 intron px - chr2R_16_22525001 chr2R_22525001 RAL-843 1438 chr2R 22580417 22580445 chr2R 22586617 22586645 diver 4 6200 0.0 7.0 3.5 0.9 6228 chr2R 22580417 intron dnr1 - chr2R 22583531 intron dnr1 - chr2R 22586645 intron dnr1 - chr2R_4_22580001 chr2R_22580001 RAL-843 1439 chr2R 22588110 22588157 chr2R 22588245 22588274 13 135 10.5 11.5 11.0 1.1 164 chr2R 22588110 intron dnr1 - chr2R 22588192 intron dnr1 - chr2R 22588274 intron dnr1 - chr2R_13_22585001 chr2R_22585001 RAL-843 1440 chr2R 22620785 22620853 chr2R 22620935 22621003 28 146 8.0 10.0 9.0 2.8 218 chr2R 22620785 5` UTR CG33143 + chr2R 22620894 5` UTR CG33143 + chr2R 22621003 5` UTR CG33143 + chr2R_28_22620001 chr2R_22620001 RAL-843 1441 chr2R 22659453 22659531 chr2R 22659581 22659659 53 125 8.5 6.5 7.5 6.2 206 chr2R 22659453 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R 22659556 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R 22659659 3` UTR,5` UTR,5` UTR CG13510 +,CG13511 +,CG42565 + chr2R_53_22655001 chr2R_22655001 RAL-843 1442 chr2R 22666552 22666620 chr2R 22666682 22666735 26 129 9.0 5.5 7.2 3.2 183 chr2R 22666552 3` UTR,intron CR45269 -,CR42868 + chr2R 22666644 5` UTR CR42868 + chr2R 22666735 5` UTR CR42868 + chr2R_26_22665001 chr2R_22665001 RAL-843 1443 chr2R 22723192 22723260 chr2R 22723318 22723386 27 126 8.5 10.5 9.5 2.6 194 chr2R 22723192 intron jbug - chr2R 22723289 intron jbug - chr2R 22723386 intron jbug - chr2R_27_22720001 chr2R_22720001 RAL-843 1444 chr2R 22748327 22748359 chr2R 22748440 22748486 14 123 2.0 15.5 8.8 1.4 159 chr2R 22748327 intron CG42260 - chr2R 22748406 intron CG42260 - chr2R 22748486 intron CG42260 - chr2R_14_22745001 chr2R_22745001 RAL-843 1445 chr2R 22763575 22763582 chr2R 22763712 22763720 5 136 0.0 15.0 7.5 0.6 145 chr2R 22763575 intron CG42260 - chr2R 22763648 intron CG42260 - chr2R 22763720 intron,5` UTR CG42260 -,CG13527 + chr2R_5_22760001 chr2R_22760001 RAL-843 1446 chr2R 22787557 22787592 chr2R 22787740 22787775 29 182 6.5 6.5 6.5 3.9 218 chr2R 22787557 intron CG42260 - chr2R 22787666 intron CG42260 - chr2R 22787775 intron CG42260 - chr2R_29_22785001 chr2R_22785001 RAL-843 1447 chr2R 22843012 22843043 chr2R 22845028 22845059 flea 9 2015 7.0 11.0 9.0 0.9 2047 chr2R 22843012 intergenic CG9826 + chr2R 22844036 intergenic not near genes chr2R 22845059 intergenic not near genes chr2R_9_22840001 chr2R_22840001 RAL-843 1448 chr2R 22941764 22941842 chr2R 22941900 22941971 25 131 0.5 5.5 3.0 6.2 207 chr2R 22941764 intergenic CG42694 + chr2R 22941868 intergenic CG42694 + chr2R 22941971 5` UTR CG42694 + chr2R_25_22940001 chr2R_22940001 RAL-843 1449 chr2R 22951792 22951865 chr2R 22951927 22952001 18 136 6.0 8.0 7.0 2.2 209 chr2R 22951792 3` UTR CR32835 - chr2R 22951896 3` UTR CR32835 - chr2R 22952001 3` UTR CR32835 - chr2R_18_22950001 chr2R_22950001 RAL-843 1450 chr2R 22953340 22953384 chr2R 22953484 22953528 9 144 5.5 4.5 5.0 1.5 188 chr2R 22953340 intron CR32835 - chr2R 22953434 3` UTR CR32835 - chr2R 22953528 3` UTR CR32835 - chr2R_9_22950001 chr2R_22950001 RAL-843 1451 chr2R 22971470 22971477 chr2R 22971588 22971606 4 123 3.0 11.0 7.0 0.5 136 chr2R 22971470 intergenic not near genes chr2R 22971538 intergenic not near genes chr2R 22971606 intergenic not near genes chr2R_4_22970001 chr2R_22970001 RAL-843 1452 chr2R 22971478 22971524 chr2R 22971587 22971653 23 119 3.0 11.0 7.0 2.9 175 chr2R 22971478 intergenic not near genes chr2R 22971566 intergenic not near genes chr2R 22971653 intergenic not near genes chr2R_23_22970001 chr2R_22970001 RAL-843 1453 chr2R 23024355 23024406 chr2R 23024458 23024497 13 118 0.0 5.5 2.8 3.4 142 chr2R 23024355 intron,intron twi +,CG42741 - chr2R 23024426 intron,intron twi +,CG42741 - chr2R 23024497 intron,intron twi +,CG42741 - chr2R_13_23020001 chr2R_23020001 RAL-843 1454 chr2R 23041154 23041198 chr2R 23041282 23041326 13 128 9.5 17.0 13.2 0.9 172 chr2R 23041154 intron,intron twi +,CG42741 - chr2R 23041240 intron,intron twi +,CG42741 - chr2R 23041326 intron,intron twi +,CG42741 - chr2R_13_23040001 chr2R_23040001 RAL-843 1455 chr2R 23052538 23052549 chr2R 23052681 23052692 4 143 12.0 12.5 12.2 0.3 154 chr2R 23052538 intergenic not near genes chr2R 23052615 intergenic not near genes chr2R 23052692 intergenic not near genes chr2R_4_23050001 chr2R_23050001 RAL-843 1456 chr2R 23134787 23134840 chr2R 23134920 23134973 21 130 12.0 11.5 11.8 1.6 186 chr2R 23134787 intergenic not near genes chr2R 23134880 intergenic not near genes chr2R 23134973 intergenic not near genes chr2R_21_23130001 chr2R_23130001 RAL-843 1457 chr2R 23161977 23162042 chr2R 23162140 23162205 29 163 6.5 11.0 8.8 3.0 228 chr2R 23161977 exon CG9899 + chr2R 23162091 intergenic CG9899 + chr2R 23162205 intergenic CG9899 + chr2R_29_23160001 chr2R_23160001 RAL-843 1458 chr2R 23294171 23294219 chr2R 23294296 23294345 13 119 0.5 10.5 5.5 2.0 174 chr2R 23294171 intergenic not near genes chr2R 23294258 intergenic not near genes chr2R 23294345 intergenic not near genes chr2R_13_23290001 chr2R_23290001 RAL-843 1459 chr2R 23304226 23304307 chr2R 23304643 23304724 19 415 3.5 3.5 3.5 4.2 498 chr2R 23304226 intergenic not near genes chr2R 23304475 intergenic not near genes chr2R 23304724 intergenic not near genes chr2R_19_23300001 chr2R_23300001 RAL-843 1460 chr2R 23356234 23356301 chr2R 23356373 23356428 34 137 9.5 5.5 7.5 4.0 194 chr2R 23356234 3` UTR Rpi + chr2R 23356331 3` UTR Rpi + chr2R 23356428 3` UTR,3` UTR Rpi +,CG3500 - chr2R_34_23355001 chr2R_23355001 RAL-843 1461 chr2R 23402586 23402610 chr2R 23407683 23407707 flea 7 5097 7.0 9.5 8.2 0.8 5121 chr2R 23402586 intergenic CG3520 - chr2R 23405146 intergenic not near genes chr2R 23407707 intergenic not near genes chr2R_7_23405001 chr2R_23405001 RAL-843 1462 chr2R 23427714 23427718 chr2R 23427906 23427910 4 192 23.0 7.5 15.2 0.2 196 chr2R 23427714 intron CG9815 - chr2R 23427812 intron CG9815 - chr2R 23427910 intron CG9815 - chr2R_4_23425001 chr2R_23425001 RAL-843 1463 chr2R 23427722 23427787 chr2R 23427903 23427978 32 190 5.0 7.5 6.2 4.4 256 chr2R 23427722 intron CG9815 - chr2R 23427850 intron CG9815 - chr2R 23427978 intron CG9815 - chr2R_32_23425001 chr2R_23425001 RAL-843 1464 chr2R 23437181 23437238 chr2R 23437307 23437342 15 118 11.5 10.0 10.8 1.3 161 chr2R 23437181 intergenic not near genes chr2R 23437262 intergenic not near genes chr2R 23437342 intergenic not near genes chr2R_15_23435001 chr2R_23435001 RAL-843 1465 chr2R 23461095 23461132 chr2R 23461227 23461249 11 122 9.5 14.5 12.0 0.8 154 chr2R 23461095 intron CG43795 + chr2R 23461172 intron CG43795 + chr2R 23461249 intron CG43795 + chr2R_11_23460001 chr2R_23460001 RAL-843 1466 chr2R 23467522 23467587 chr2R 23467702 23467767 7 180 10.0 6.5 8.2 0.8 245 chr2R 23467522 intron CG43795 + chr2R 23467644 intron CG43795 + chr2R 23467767 intron CG43795 + chr2R_7_23465001 chr2R_23465001 RAL-843 1467 chr2R 23481599 23481675 chr2R 23481736 23481812 13 137 0.0 7.0 3.5 2.9 213 chr2R 23481599 intron CG43795 + chr2R 23481706 intron CG43795 + chr2R 23481812 intron CG43795 + chr2R_13_23480001 chr2R_23480001 RAL-843 1468 chr2R 23482854 23482862 chr2R 23483006 23483015 5 153 28.0 7.5 17.8 0.3 161 chr2R 23482854 intron CG43795 + chr2R 23482934 intron CG43795 + chr2R 23483015 intron CG43795 + chr2R_5_23480001 chr2R_23480001 RAL-843 1469 chr2R 23482864 23482900 chr2R 23482998 23483034 12 140 16.5 6.0 11.2 1.0 170 chr2R 23482864 intron CG43795 + chr2R 23482949 intron CG43795 + chr2R 23483034 intron CG43795 + chr2R_12_23480001 chr2R_23480001 RAL-843 1470 chr2R 23482904 23482918 chr2R 23482993 23483064 9 125 12.0 5.5 8.8 0.9 160 chr2R 23482904 intron CG43795 + chr2R 23482984 intron CG43795 + chr2R 23483064 intron CG43795 + chr2R_9_23480001 chr2R_23480001 RAL-843 1471 chr2R 23508869 23508945 chr2R 23509036 23509112 28 167 5.0 7.5 6.2 3.9 243 chr2R 23508869 intergenic not near genes chr2R 23508990 intergenic not near genes chr2R 23509112 intergenic not near genes chr2R_28_23505001 chr2R_23505001 RAL-843 1472 chr2R 23529545 23529603 chr2R 23537156 23537199 412 20 7608 10.0 10.5 10.2 1.8 7654 chr2R 23529545 intron bw - chr2R 23533372 intron bw - chr2R 23537199 exon bw - chr2R_20_23530001 chr2R_23530001 RAL-843 1473 chr2R 23563841 23563919 chr2R 23563971 23564049 39 128 12.0 9.0 10.5 3.4 208 chr2R 23563841 3` UTR Pi3K59F + chr2R 23563945 3` UTR Pi3K59F + chr2R 23564049 5` UTR CG30184 + chr2R_39_23560001 chr2R_23560001 RAL-843 1474 chr2R 23600919 23600960 chr2R 23601083 23601107 17 157 6.5 16.0 11.2 1.4 188 chr2R 23600919 3` UTR,3` UTR CG10332 -,IM18 - chr2R 23601013 3` UTR,exon CG10332 -,IM18 - chr2R 23601107 3` UTR,exon CG10332 -,IM18 - chr2R_17_23600001 chr2R_23600001 RAL-843 1475 chr2R 23674131 23674188 chr2R 23674261 23674318 25 128 9.0 8.0 8.5 2.6 187 chr2R 23674131 intron Pde8 + chr2R 23674224 intron Pde8 + chr2R 23674318 exon Pde8 + chr2R_25_23670001 chr2R_23670001 RAL-843 1476 chr2R 23784429 23784448 chr2R 23784557 23784576 12 128 13.5 7.0 10.2 1.1 147 chr2R 23784429 intron CG9850 - chr2R 23784502 intron CG9850 - chr2R 23784576 intron CG9850 - chr2R_12_23780001 chr2R_23780001 RAL-843 1477 chr2R 23784450 23784505 chr2R 23784552 23784592 23 124 8.5 8.0 8.2 2.5 142 chr2R 23784450 intron CG9850 - chr2R 23784521 intron CG9850 - chr2R 23784592 intron CG9850 - chr2R_23_23780001 chr2R_23780001 RAL-843 1478 chr2R 23914268 23914331 chr2R 23921942 23921990 412 32 7668 8.5 17.0 12.8 2.3 7722 chr2R 23914268 exon kcc + chr2R 23918129 intron kcc + chr2R 23921990 exon kcc + chr2R_32_23915001 chr2R_23915001 RAL-843 1479 chr2R 23986487 23986541 chr2R 23986617 23986671 23 130 6.0 12.0 9.0 2.3 184 chr2R 23986487 intron Phm - chr2R 23986579 intron Phm - chr2R 23986671 intron,5` UTR Phm -,CG30178 + chr2R_23_23985001 chr2R_23985001 RAL-843 1480 chr2R 24031336 24031407 chr2R 24031470 24031534 47 133 11.0 7.5 9.2 4.6 198 chr2R 24031336 5` UTR CG30172 - chr2R 24031435 intergenic CG30172 -,Chi - chr2R 24031534 intergenic Chi -,CG30172 - chr2R_47_24030001 chr2R_24030001 RAL-843 1481 chr2R 24147026 24147045 chr2R 24154654 24154673 412 6 7627 19.5 8.5 14.0 0.4 7647 chr2R 24147026 intron Dat + chr2R 24150850 intron Dat + chr2R 24154673 intron Dat + chr2R_6_24150001 chr2R_24150001 RAL-843 1482 chr2R 24147047 24147095 chr2R 24154646 24154723 412 19 7617 6.5 8.0 7.2 2.3 7676 chr2R 24147047 intron Dat + chr2R 24150885 intron Dat + chr2R 24154723 intron Dat + chr2R_19_24150001 chr2R_24150001 RAL-843 1483 chr2R 24177188 24177259 chr2R 24184723 24184794 412 40 7535 10.5 10.0 10.2 3.6 7606 chr2R 24177188 3` UTR Nop60B + chr2R 24180991 intron Nop60B + chr2R 24184794 intron Nop60B + chr2R_40_24180001 chr2R_24180001 RAL-843 1484 chr2R 24228366 24228377 chr2R 24228475 24228497 8 118 18.5 6.5 12.5 0.6 131 chr2R 24228366 intron CG30419 - chr2R 24228432 intron CG30419 - chr2R 24228497 intron CG30419 - chr2R_8_24225001 chr2R_24225001 RAL-843 1485 chr2R 24228383 24228425 chr2R 24228474 24228492 11 93 6.5 6.5 6.5 1.5 109 chr2R 24228383 intron CG30419 - chr2R 24228438 intron CG30419 - chr2R 24228492 intron CG30419 - chr2R_11_24225001 chr2R_24225001 RAL-843 1486 chr2R 24274778 24274863 chr2R 24274905 24274999 25 131 4.5 0.5 2.5 7.1 221 chr2R 24274778 intergenic not near genes chr2R 24274888 intergenic not near genes chr2R 24274999 intergenic not near genes chr2R_25_24270001 chr2R_24270001 RAL-843 1487 chr2R 24292794 24292851 chr2R 24292921 24292978 28 123 8.0 5.5 6.8 3.6 184 chr2R 24292794 intergenic not near genes chr2R 24292886 intergenic not near genes chr2R 24292978 intergenic not near genes chr2R_28_24290001 chr2R_24290001 RAL-843 1488 chr2R 24351366 24351438 chr2R 24351497 24351569 24 130 4.5 7.0 5.8 3.5 203 chr2R 24351366 intron,5` UTR bs +,CG44812 - chr2R 24351468 intron bs + chr2R 24351569 intron,3` UTR bs +,CR44811 - chr2R_24_24350001 chr2R_24350001 RAL-843 1489 chr2R 24353377 24353416 chr2R 24361789 24361828 roo 11 8412 15.5 7.5 11.5 0.9 8451 chr2R 24353377 intron,intron bs +,CR44811 - chr2R 24357602 intron,intron bs +,CR44811 - chr2R 24361828 intron,intron bs +,CR44811 - chr2R_11_24355001 chr2R_24355001 RAL-843 1490 chr2R 24383787 24383844 chr2R 24383915 24383963 21 130 6.5 12.0 9.2 2.1 176 chr2R 24383787 intron mAChR-A - chr2R 24383875 intron mAChR-A - chr2R 24383963 exon mAChR-A - chr2R_21_24380001 chr2R_24380001 RAL-843 1491 chr2R 24548875 24548952 chr2R 24549009 24549051 24 124 5.0 5.0 5.0 4.0 176 chr2R 24548875 intron,intron CG4622 -,ITP + chr2R 24548963 intron,intron CG4622 -,ITP + chr2R 24549051 intron,intron CG4622 -,ITP + chr2R_24_24545001 chr2R_24545001 RAL-843 1492 chr2R 24590044 24590144 chr2R 24590202 24590250 21 151 0.0 7.0 3.5 4.7 206 chr2R 24590044 intron pio + chr2R 24590147 intron pio + chr2R 24590250 intron pio + chr2R_21_24590001 chr2R_24590001 RAL-843 1493 chr2R 24647547 24647614 chr2R 24655154 24655221 412 28 7606 7.0 12.5 9.8 2.6 7674 chr2R 24647547 intergenic not near genes chr2R 24651384 intergenic not near genes chr2R 24655221 intergenic not near genes chr2R_28_24650001 chr2R_24650001 RAL-843 1494 chr2R 24689971 24690040 chr2R 24690117 24690185 19 146 7.5 11.0 9.2 1.9 214 chr2R 24689971 intergenic not near genes chr2R 24690078 intergenic not near genes chr2R 24690185 intergenic not near genes chr2R_19_24690001 chr2R_24690001 RAL-843 1495 chr2R 24719798 24719808 chr2R 24719954 24719959 5 157 9.5 19.0 14.2 0.3 161 chr2R 24719798 intron Mid1 - chr2R 24719878 intron Mid1 - chr2R 24719959 intron Mid1 - chr2R_5_24715001 chr2R_24715001 RAL-843 1496 chr2R 24719810 24719826 chr2R 24719936 24719988 9 158 6.0 13.0 9.5 0.9 178 chr2R 24719810 intron Mid1 - chr2R 24719899 intron Mid1 - chr2R 24719988 intron Mid1 - chr2R_9_24715001 chr2R_24715001 RAL-843 1497 chr2R 24727866 24727894 chr2R 24735397 24735451 mdg1 11 7548 10.0 14.5 12.2 0.8 7585 chr2R 24727866 intron Mid1 - chr2R 24731658 intron Mid1 - chr2R 24735451 intron Mid1 - chr2R_11_24730001 chr2R_24730001 RAL-843 1498 chr2R 24727904 24727917 chr2R 24735392 24735438 mdg1 6 7519 4.0 12.5 8.2 0.7 7534 chr2R 24727904 intron Mid1 - chr2R 24731671 intron Mid1 - chr2R 24735438 intron Mid1 - chr2R_6_24730001 chr2R_24730001 RAL-843 1499 chr2R 24763590 24763637 chr2R 24765588 24765663 G2 21 2013 7.0 7.5 7.2 2.6 2073 chr2R 24763590 exon CG3894 + chr2R 24764626 intron CG3894 + chr2R 24765663 exon CG3894 + chr2R_21_24760001 chr2R_24760001 RAL-843 1500 chr2R 24848638 24848681 chr2R 24848762 24848815 26 133 0.0 12.0 6.0 3.7 177 chr2R 24848638 intergenic CG3650 + chr2R 24848726 intergenic CG3650 + chr2R 24848815 intergenic CG3650 + chr2R_26_24845001 chr2R_24845001 RAL-843 1501 chr2R 25053051 25053091 chr2R 25053183 25053223 18 131 14.5 13.0 13.8 1.2 172 chr2R 25053051 intergenic not near genes chr2R 25053137 intergenic not near genes chr2R 25053223 intergenic not near genes chr2R_18_25050001 chr2R_25050001 RAL-843 1502 chr2R 25076182 25076184 chr2R 25076471 25076473 5 289 25.5 14.0 19.8 0.2 291 chr2R 25076182 intron gol - chr2R 25076328 intron gol - chr2R 25076473 intron gol - chr2R_5_25075001 chr2R_25075001 RAL-843 1503 chr2R 25076522 25076530 chr2R 25076652 25076660 6 130 16.5 32.0 24.2 0.2 138 chr2R 25076522 intron gol - chr2R 25076591 intron gol - chr2R 25076660 intron gol - chr2R_6_25075001 chr2R_25075001 RAL-843 1504 chr2R 25081571 25081579 chr2R 25082707 25082725 4 1141 20.5 11.0 15.8 0.2 1154 chr2R 25081571 intron gol - chr2R 25082148 intron gol - chr2R 25082725 intron gol - chr2R_4_25080001 chr2R_25080001 RAL-843 1505 chr2R 25081592 25081632 chr2R 25082703 25082778 19 1135 6.0 10.0 8.0 2.1 1186 chr2R 25081592 intron gol - chr2R 25082185 intron gol - chr2R 25082778 intron gol - chr2R_19_25080001 chr2R_25080001 RAL-843 1506 chr2R 25099242 25099265 chr2R 25099313 25099352 8 81 9.5 9.5 9.5 0.8 110 chr2R 25099242 intron lov - chr2R 25099297 intron lov - chr2R 25099352 intron lov - chr2R_8_25095001 chr2R_25095001 RAL-843 1507 chr2R 25101230 25101300 chr2R 25101382 25101451 35 151 6.5 5.0 5.8 5.1 221 chr2R 25101230 intron lov - chr2R 25101340 intron lov - chr2R 25101451 intron lov - chr2R_35_25100001 chr2R_25100001 RAL-843 1508 chr2R 25104735 25104800 chr2R 25104910 25104975 30 174 8.0 9.0 8.5 3.2 240 chr2R 25104735 intron lov - chr2R 25104855 intron lov - chr2R 25104975 intron lov - chr2R_30_25100001 chr2R_25100001 RAL-843 1509 chr2R 25130967 25131006 chr2R 25131094 25131133 13 127 12.5 7.0 9.8 1.2 166 chr2R 25130967 intron lov - chr2R 25131050 intron lov - chr2R 25131133 intron lov - chr2R_13_25130001 chr2R_25130001 RAL-843 1510 chr2R 25141623 25141671 chr2R 25159353 25159411 roo 17 17738 11.5 10.0 10.8 1.4 17788 chr2R 25141623 intergenic not near genes chr2R 25150517 intergenic not near genes chr2R 25159411 intergenic not near genes chr2R_17_25150001 chr2R_25150001 RAL-843 1511 chr2R 25167633 25167695 chr2R 25167765 25167827 29 130 9.5 7.5 8.5 3.1 194 chr2R 25167633 intergenic CG34038 + chr2R 25167730 5` UTR CG34038 + chr2R 25167827 5` UTR CG34038 + chr2R_29_25165001 chr2R_25165001 RAL-843 1512 chr2R 25201183 25201248 chr2R 25201359 25201424 26 174 10.5 7.0 8.8 2.7 241 chr2R 25201183 intron CG9380 - chr2R 25201304 intron CG9380 - chr2R 25201424 intron CG9380 - chr2R_26_25200001 chr2R_25200001 RAL-843 1513 chr2R 25213775 25213832 chr2R 25213910 25213967 16 135 5.5 3.5 4.5 2.9 192 chr2R 25213775 intron CG9380 - chr2R 25213871 intron CG9380 - chr2R 25213967 intron CG9380 - chr2R_16_25210001 chr2R_25210001 RAL-843 1514 chr3L 41393 41405 chr3L 41613 41622 4 218 19.5 12.0 15.8 0.2 229 chr3L 41393 intergenic not near genes chr3L 41508 intergenic not near genes chr3L 41622 intergenic not near genes chr3L_4_40001 chr3L_40001 RAL-843 1515 chr3L 41406 41464 chr3L 41611 41668 29 212 8.0 11.5 9.8 2.7 262 chr3L 41406 intergenic not near genes chr3L 41537 intergenic not near genes chr3L 41668 intergenic not near genes chr3L_29_40001 chr3L_40001 RAL-843 1516 chr3L 68936 69009 chr3L 69073 69130 34 135 5.0 7.0 6.0 4.9 194 chr3L 68936 3` UTR Lsp1gamma + chr3L 69033 intergenic Lsp1gamma +,CR44510 + chr3L 69130 intergenic CR44510 +,Lsp1gamma + chr3L_34_65001 chr3L_65001 RAL-843 1517 chr3L 71891 71953 chr3L 72020 72085 34 130 13.0 14.5 13.8 2.3 194 chr3L 71891 intergenic CR43988 -,CG43150 + chr3L 71988 intergenic CR43988 - chr3L 72085 intergenic CR43988 - chr3L_34_70001 chr3L_70001 RAL-843 1518 chr3L 110166 110238 chr3L 119383 119455 roo 22 9216 11.0 10.0 10.5 1.9 9289 chr3L 110166 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119455 intergenic not near genes chr3L_22_110001 chr3L_110001 RAL-843 1519 chr3L 343152 343177 chr3L 343325 343343 9 172 18.5 17.0 17.8 0.5 191 chr3L 343152 intron Ptpmeg + chr3L 343248 intron Ptpmeg + chr3L 343343 intron Ptpmeg + chr3L_9_340001 chr3L_340001 RAL-843 1520 chr3L 351778 351833 chr3L 351953 352016 26 180 8.0 5.5 6.8 3.3 238 chr3L 351778 exon Ptpmeg + chr3L 351897 intron Ptpmeg + chr3L 352016 intron Ptpmeg + chr3L_26_350001 chr3L_350001 RAL-843 1521 chr3L 402655 402718 chr3L 409745 409796 297 30 7095 9.5 11.5 10.5 2.6 7141 chr3L 402655 intergenic not near genes chr3L 406226 intergenic not near genes chr3L 409796 intergenic not near genes chr3L_30_405001 chr3L_405001 RAL-843 1522 chr3L 470871 470943 chr3L 471148 471220 39 274 6.5 8.5 7.5 4.6 349 chr3L 470871 intron klar - chr3L 471046 intron klar - chr3L 471220 intron klar - chr3L_39_470001 chr3L_470001 RAL-843 1523 chr3L 524694 524776 chr3L 524828 524908 17 131 0.0 7.5 3.8 3.5 214 chr3L 524694 intron klar - chr3L 524801 intron klar - chr3L 524908 intron klar - chr3L_17_520001 chr3L_520001 RAL-843 1524 chr3L 559473 559497 chr3L 559912 559935 10 438 17.5 0.0 8.8 1.0 462 chr3L 559473 intron hipk + chr3L 559704 intron hipk + chr3L 559935 intron hipk + chr3L_10_555001 chr3L_555001 RAL-843 1525 chr3L 592917 592969 chr3L 593043 593095 18 126 8.5 6.5 7.5 2.1 178 chr3L 592917 intergenic MED14 + chr3L 593006 intergenic MED14 + chr3L 593095 intergenic MED14 + chr3L_18_590001 chr3L_590001 RAL-843 1526 chr3L 651346 651412 chr3L 651484 651550 31 138 16.0 9.0 12.5 2.3 204 chr3L 651346 intergenic Gale +,CG3402 - chr3L 651448 intergenic CG3402 -,Gale + chr3L 651550 3` UTR CG3402 - chr3L_31_650001 chr3L_650001 RAL-843 1527 chr3L 660123 660150 chr3L 660250 660268 roo 6 128 7.0 17.0 12.0 0.5 145 chr3L 660123 intergenic not near genes chr3L 660196 intergenic not near genes chr3L 660268 intergenic not near genes chr3L_6_660001 chr3L_660001 RAL-843 1528 chr3L 670030 670044 chr3L 670157 670172 6 126 8.5 17.5 13.0 0.4 142 chr3L 670030 intergenic not near genes chr3L 670101 intergenic not near genes chr3L 670172 intergenic not near genes chr3L_6_670001 chr3L_670001 RAL-843 1529 chr3L 705858 705918 chr3L 706004 706064 23 146 11.5 7.5 9.5 2.2 206 chr3L 705858 intergenic CG13895 -,CR44514 + chr3L 705961 3` UTR CG13895 - chr3L 706064 3` UTR CG13895 - chr3L_23_705001 chr3L_705001 RAL-843 1530 chr3L 758622 758688 chr3L 758749 758816 23 127 5.0 6.0 5.5 3.5 194 chr3L 758622 intergenic not near genes chr3L 758719 intergenic not near genes chr3L 758816 intergenic not near genes chr3L_23_755001 chr3L_755001 RAL-843 1531 chr3L 789864 789947 chr3L 790399 790483 roo 10 535 0.0 0.5 0.2 8.3 619 chr3L 789864 intergenic not near genes chr3L 790174 intergenic not near genes chr3L 790483 intergenic not near genes chr3L_10_790001 chr3L_790001 RAL-843 1532 chr3L 791712 791735 chr3L 791826 791862 8 122 7.0 13.0 10.0 0.7 150 chr3L 791712 intergenic not near genes chr3L 791787 intergenic not near genes chr3L 791862 intergenic not near genes chr3L_8_790001 chr3L_790001 RAL-843 1533 chr3L 852519 852564 chr3L 852671 852716 18 150 8.5 10.5 9.5 1.7 197 chr3L 852519 3` UTR CG13890 + chr3L 852618 3` UTR CG13890 + chr3L 852716 intergenic dpr20 -,CG13890 + chr3L_18_850001 chr3L_850001 RAL-843 1534 chr3L 857957 857986 chr3L 866482 866512 Tirant 9 8525 19.0 7.0 13.0 0.6 8555 chr3L 857957 intergenic not near genes chr3L 862234 intergenic not near genes chr3L 866512 5` UTR CG12502 + chr3L_9_860001 chr3L_860001 RAL-843 1535 chr3L 857989 858031 chr3L 866478 866545 Tirant 9 8509 8.5 7.0 7.8 1.0 8556 chr3L 857989 intergenic not near genes chr3L 862267 intergenic not near genes chr3L 866545 5` UTR CG12502 + chr3L_9_860001 chr3L_860001 RAL-843 1536 chr3L 899996 900017 chr3L 900130 900151 8 134 0.0 24.0 12.0 0.6 155 chr3L 899996 intergenic not near genes chr3L 900074 intergenic not near genes chr3L 900151 intergenic not near genes chr3L_8_900001 chr3L_900001 RAL-843 1537 chr3L 905027 905092 chr3L 905159 905226 7 133 2.0 3.5 2.8 1.8 199 chr3L 905027 intergenic not near genes chr3L 905126 intergenic not near genes chr3L 905226 intergenic not near genes chr3L_7_905001 chr3L_905001 RAL-843 1538 chr3L 922124 922184 chr3L 922246 922316 22 128 5.0 10.5 7.8 2.5 192 chr3L 922124 intron Glut1 + chr3L 922220 intron Glut1 + chr3L 922316 intron Glut1 + chr3L_22_920001 chr3L_920001 RAL-843 1539 chr3L 925139 925195 chr3L 932605 932671 mdg1 25 7475 7.0 4.5 5.8 3.7 7532 chr3L 925139 intron Glut1 + chr3L 928905 intron Glut1 + chr3L 932671 intron Glut1 + chr3L_25_925001 chr3L_925001 RAL-843 1540 chr3L 933858 933938 chr3L 934012 934091 33 153 8.0 4.0 6.0 4.7 233 chr3L 933858 intron Glut1 + chr3L 933974 intron Glut1 + chr3L 934091 intron Glut1 + chr3L_33_930001 chr3L_930001 RAL-843 1541 chr3L 939736 939788 chr3L 940907 940959 jockey 30 1170 11.0 9.5 10.2 2.7 1223 chr3L 939736 intron Glut1 + chr3L 940348 intron Glut1 + chr3L 940959 intron Glut1 + chr3L_30_940001 chr3L_940001 RAL-843 1542 chr3L 949864 949897 chr3L 949993 950026 19 129 9.5 5.5 7.5 2.2 162 chr3L 949864 intron Glut1 + chr3L 949945 intron Glut1 + chr3L 950026 intron Glut1 + chr3L_19_945001 chr3L_945001 RAL-843 1543 chr3L 971917 971970 chr3L 972031 972089 17 135 5.0 4.0 4.5 3.1 172 chr3L 971917 intron Glut1 + chr3L 972003 intron Glut1 + chr3L 972089 intron Glut1 + chr3L_17_970001 chr3L_970001 RAL-843 1544 chr3L 973933 973980 chr3L 974059 974093 22 122 7.0 8.0 7.5 2.6 160 chr3L 973933 intron Glut1 + chr3L 974013 intron Glut1 + chr3L 974093 intron Glut1 + chr3L_22_970001 chr3L_970001 RAL-843 1545 chr3L 1010949 1011207 chr3L 1011080 1011313 21 128 15.0 6.5 10.8 1.8 364 chr3L 1010949 intron trio - chr3L 1011131 intron trio - chr3L 1011313 intron trio - chr3L_21_1010001 chr3L_1010001 RAL-843 1546 chr3L 1015109 1015163 chr3L 1015224 1015289 13 125 3.0 7.0 5.0 2.2 180 chr3L 1015109 intron trio - chr3L 1015199 intron trio - chr3L 1015289 intron trio - chr3L_13_1015001 chr3L_1015001 RAL-843 1547 chr3L 1028773 1028835 chr3L 1028909 1028971 27 136 7.5 7.0 7.2 3.3 198 chr3L 1028773 intron trio - chr3L 1028872 intron trio - chr3L 1028971 intron trio - chr3L_27_1025001 chr3L_1025001 RAL-843 1548 chr3L 1031541 1031568 chr3L 1031655 1031686 17 119 10.0 7.5 8.8 1.7 145 chr3L 1031541 intron trio - chr3L 1031614 intron trio - chr3L 1031686 intron trio - chr3L_17_1030001 chr3L_1030001 RAL-843 1549 chr3L 1031570 1031596 chr3L 1031651 1031722 15 112 8.0 7.5 7.8 1.7 152 chr3L 1031570 intron trio - chr3L 1031646 intron trio - chr3L 1031722 intron trio - chr3L_15_1030001 chr3L_1030001 RAL-843 1550 chr3L 1033316 1033327 chr3L 1033462 1033473 9 145 0.5 0.0 0.2 7.5 157 chr3L 1033316 intron trio - chr3L 1033394 intron trio - chr3L 1033473 intron trio - chr3L_9_1030001 chr3L_1030001 RAL-843 1551 chr3L 1040511 1040580 chr3L 1040644 1040714 33 133 5.5 6.0 5.8 4.9 203 chr3L 1040511 intron bab1 - chr3L 1040612 intron bab1 - chr3L 1040714 intron bab1 - chr3L_33_1040001 chr3L_1040001 RAL-843 1552 chr3L 1047308 1047385 chr3L 1055170 1055218 412 17 7841 4.0 3.5 3.8 3.5 7910 chr3L 1047308 intron bab1 - chr3L 1051263 intron bab1 - chr3L 1055218 intron bab1 - chr3L_17_1050001 chr3L_1050001 RAL-843 1553 chr3L 1109585 1109660 chr3L 1109723 1109798 30 137 11.0 4.5 7.8 3.4 213 chr3L 1109585 intergenic not near genes chr3L 1109692 intergenic not near genes chr3L 1109798 intergenic not near genes chr3L_30_1105001 chr3L_1105001 RAL-843 1554 chr3L 1154085 1154148 chr3L 1163288 1163348 roo 18 9200 12.5 9.5 11.0 1.5 9263 chr3L 1154085 intron bab2 - chr3L 1158716 intron bab2 - chr3L 1163348 intron bab2 - chr3L_18_1155001 chr3L_1155001 RAL-843 1555 chr3L 1166974 1166987 chr3L 1167101 1167113 5 127 8.5 9.5 9.0 0.5 139 chr3L 1166974 intron bab2 - chr3L 1167044 intron bab2 - chr3L 1167113 intron bab2 - chr3L_5_1165001 chr3L_1165001 RAL-843 1556 chr3L 1214171 1214248 chr3L 1214298 1214375 12 126 6.0 0.5 3.2 2.9 204 chr3L 1214171 intron mwh + chr3L 1214273 intron mwh + chr3L 1214375 intron mwh + chr3L_12_1210001 chr3L_1210001 RAL-843 1557 chr3L 1219551 1219565 chr3L 1227334 1227335 412 4 7780 19.0 10.5 14.8 0.3 7784 chr3L 1219551 intron mwh + chr3L 1223443 intron mwh + chr3L 1227335 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-843 1558 chr3L 1219569 1219621 chr3L 1227332 1227345 412 23 7771 6.0 10.5 8.2 2.5 7776 chr3L 1219569 intron mwh + chr3L 1223457 intron mwh + chr3L 1227345 intron mwh + chr3L_23_1220001 chr3L_1220001 RAL-843 1559 chr3L 1236188 1236237 chr3L 1236315 1236364 14 123 13.0 0.0 6.5 1.9 176 chr3L 1236188 intron CG9194 + chr3L 1236276 intron CG9194 + chr3L 1236364 intron CG9194 + chr3L_14_1235001 chr3L_1235001 RAL-843 1560 chr3L 1315006 1315043 chr3L 1315104 1315141 15 110 79.5 74.5 77.0 0.2 135 chr3L 1315006 exon CG9153 + chr3L 1315074 exon CG9153 + chr3L 1315141 exon CG9153 + chr3L_15_1315001 chr3L_1315001 RAL-843 1561 chr3L 1310987 1311063 chr3L 1315802 1315873 46 4825 92.5 93.5 93.0 0.5 4886 chr3L 1310987 exon CG2469 + chr3L 1313430 intergenic CG9186 -,CG9153 + chr3L 1315873 exon CG9153 + chr3L_46_1310001 chr3L_1310001 RAL-843 1562 chr3L 1323799 1323864 chr3L 1323926 1323989 31 133 3.0 8.0 5.5 4.8 190 chr3L 1323799 intron,intron Myo61F +,CR45166 - chr3L 1323894 intron,intron Myo61F +,CR45166 - chr3L 1323989 intron,3` UTR Myo61F +,CR45166 - chr3L_31_1320001 chr3L_1320001 RAL-843 1563 chr3L 1347115 1347189 chr3L 1347250 1347284 28 127 7.0 10.0 8.5 2.9 169 chr3L 1347115 intron Ptp61F - chr3L 1347200 intron Ptp61F - chr3L 1347284 intron Ptp61F - chr3L_28_1345001 chr3L_1345001 RAL-843 1564 chr3L 1371631 1371688 chr3L 1371865 1371917 11 227 10.5 4.5 7.5 1.3 286 chr3L 1371631 intron,intron Ptp61F -,ru + chr3L 1371774 intron,intron Ptp61F -,ru + chr3L 1371917 intron,intron Ptp61F -,ru + chr3L_11_1370001 chr3L_1370001 RAL-843 1565 chr3L 1372315 1372377 chr3L 1372443 1372505 18 128 7.0 6.5 6.8 2.3 190 chr3L 1372315 intron,intron Ptp61F -,ru + chr3L 1372410 intron,intron Ptp61F -,ru + chr3L 1372505 intron,intron Ptp61F -,ru + chr3L_18_1370001 chr3L_1370001 RAL-843 1566 chr3L 1396698 1396750 chr3L 1396823 1396884 20 131 8.0 4.5 6.2 2.8 186 chr3L 1396698 intron Ptp61F - chr3L 1396791 intron Ptp61F - chr3L 1396884 intron Ptp61F - chr3L_20_1395001 chr3L_1395001 RAL-843 1567 chr3L 1415730 1415740 chr3L 1415861 1415872 5 131 16.5 11.0 13.8 0.3 142 chr3L 1415730 intron Ptp61F - chr3L 1415801 intron Ptp61F - chr3L 1415872 intron Ptp61F - chr3L_5_1415001 chr3L_1415001 RAL-843 1568 chr3L 1415746 1415804 chr3L 1415857 1415928 26 125 7.5 10.5 9.0 2.6 182 chr3L 1415746 intron Ptp61F - chr3L 1415837 intron Ptp61F - chr3L 1415928 intron Ptp61F - chr3L_26_1415001 chr3L_1415001 RAL-843 1569 chr3L 1424763 1424773 chr3L 1430044 1430077 Rt1a 5 5297 0.5 22.0 11.2 0.4 5314 chr3L 1424763 intron Ptp61F - chr3L 1427420 intron Ptp61F - chr3L 1430077 intron Ptp61F - chr3L_5_1425001 chr3L_1425001 RAL-843 1570 chr3L 1462791 1462873 chr3L 1462922 1462986 34 122 7.0 9.0 8.0 3.8 195 chr3L 1462791 intron,3` UTR Ptp61F -,CR44842 - chr3L 1462888 intron Ptp61F - chr3L 1462986 intron Ptp61F - chr3L_34_1460001 chr3L_1460001 RAL-843 1571 chr3L 1485693 1485739 chr3L 1486910 1486922 1360 15 1207 13.5 20.0 16.8 0.8 1229 chr3L 1485693 intron stet - chr3L 1486308 intron stet - chr3L 1486922 intron stet - chr3L_15_1485001 chr3L_1485001 RAL-843 1572 chr3L 1505962 1506013 chr3L 1513598 1513648 17.6 6 7636 8.0 3.0 5.5 0.9 7686 chr3L 1505962 intron,intron Psa +,cue - chr3L 1509805 intron,intron Psa +,cue - chr3L 1513648 intron,intron Psa +,cue - chr3L_6_1505001 chr3L_1505001 RAL-843 1573 chr3L 1514742 1514753 chr3L 1514883 1514899 5 145 15.5 7.5 11.5 0.4 157 chr3L 1514742 intron,intron Psa +,cue - chr3L 1514820 intron,intron Psa +,cue - chr3L 1514899 intron,intron Psa +,cue - chr3L_5_1510001 chr3L_1510001 RAL-843 1574 chr3L 1514758 1514795 chr3L 1514904 1514941 7 145 8.5 10.5 9.5 0.7 183 chr3L 1514758 intron,intron Psa +,cue - chr3L 1514850 intron,intron Psa +,cue - chr3L 1514941 intron,intron Psa +,cue - chr3L_7_1510001 chr3L_1510001 RAL-843 1575 chr3L 1569475 1569531 chr3L 1569601 1569626 27 120 11.0 14.5 12.8 2.0 151 chr3L 1569475 5` UTR CG12004 + chr3L 1569550 intron CG12004 + chr3L 1569626 intron CG12004 + chr3L_27_1565001 chr3L_1565001 RAL-843 1576 chr3L 1584114 1584122 chr3L 1584246 1584254 8 132 0.0 14.5 7.2 1.0 140 chr3L 1584114 intron CG13917 + chr3L 1584184 intron CG13917 + chr3L 1584254 intron CG13917 + chr3L_8_1580001 chr3L_1580001 RAL-843 1577 chr3L 1585894 1585936 chr3L 1586015 1586067 17 130 7.0 0.0 3.5 3.8 173 chr3L 1585894 intron CG13917 + chr3L 1585980 intron CG13917 + chr3L 1586067 intron CG13917 + chr3L_17_1585001 chr3L_1585001 RAL-843 1578 chr3L 1630995 1631028 chr3L 1631140 1631157 18 141 10.0 16.5 13.2 1.3 162 chr3L 1630995 3` UTR nSyb - chr3L 1631076 3` UTR nSyb - chr3L 1631157 3` UTR nSyb - chr3L_18_1630001 chr3L_1630001 RAL-843 1579 chr3L 1674289 1674355 chr3L 1674415 1674467 18 128 3.0 6.5 4.8 3.1 178 chr3L 1674289 intergenic CG7991 + chr3L 1674378 intergenic CG7991 + chr3L 1674467 intergenic CG7991 + chr3L_18_1670001 chr3L_1670001 RAL-843 1580 chr3L 1688414 1688438 chr3L 1688550 1688574 18 136 5.5 7.5 6.5 2.4 160 chr3L 1688414 intron CG7991 + chr3L 1688494 intron CG7991 + chr3L 1688574 intron CG7991 + chr3L_18_1685001 chr3L_1685001 RAL-843 1581 chr3L 1740806 1740877 chr3L 1741101 1741119 pogo 22 290 8.5 5.5 7.0 2.8 313 chr3L 1740806 intron Gk + chr3L 1740962 intron Gk + chr3L 1741119 intron Gk + chr3L_22_1740001 chr3L_1740001 RAL-843 1582 chr3L 1809998 1810060 chr3L 1810221 1810283 24 223 4.5 6.5 5.5 3.7 285 chr3L 1809998 intergenic not near genes chr3L 1810140 intergenic GV1 + chr3L 1810283 intergenic GV1 + chr3L_24_1810001 chr3L_1810001 RAL-843 1583 chr3L 1821593 1821650 chr3L 1821725 1821782 27 132 6.5 7.0 6.8 3.5 189 chr3L 1821593 intron GV1 + chr3L 1821688 intron GV1 + chr3L 1821782 intron GV1 + chr3L_27_1820001 chr3L_1820001 RAL-843 1584 chr3L 1841524 1841583 chr3L 1841659 1841718 20 134 5.0 6.0 5.5 3.1 194 chr3L 1841524 intron Cpr62Bc - chr3L 1841621 intron Cpr62Bc - chr3L 1841718 intron Cpr62Bc - chr3L_20_1840001 chr3L_1840001 RAL-843 1585 chr3L 1853030 1853052 chr3L 1853157 1853179 8 127 5.5 13.5 9.5 0.8 149 chr3L 1853030 intron CG13936 - chr3L 1853104 intron CG13936 - chr3L 1853179 intron CG13936 - chr3L_8_1850001 chr3L_1850001 RAL-843 1586 chr3L 1870814 1870884 chr3L 1871251 1871261 5 406 34.0 30.0 32.0 0.2 447 chr3L 1870814 exon CG13924 + chr3L 1871038 exon CG13924 + chr3L 1871261 exon CG13924 + chr3L_5_1870001 chr3L_1870001 RAL-843 1587 chr3L 1922424 1922466 chr3L 1922537 1922567 14 116 20.5 19.5 20.0 0.7 143 chr3L 1922424 intron Dbx + chr3L 1922496 intron Dbx + chr3L 1922567 intron Dbx + chr3L_14_1920001 chr3L_1920001 RAL-843 1588 chr3L 1991069 1991153 chr3L 1991198 1991281 18 128 11.0 6.5 8.8 1.8 212 chr3L 1991069 intergenic not near genes chr3L 1991175 intergenic not near genes chr3L 1991281 intergenic not near genes chr3L_18_1990001 chr3L_1990001 RAL-843 1589 chr3L 2015726 2015731 chr3L 2015854 2015859 4 128 21.0 0.0 10.5 0.3 133 chr3L 2015726 intergenic not near genes chr3L 2015792 intergenic not near genes chr3L 2015859 intergenic not near genes chr3L_4_2015001 chr3L_2015001 RAL-843 1590 chr3L 2108209 2108275 chr3L 2113463 2113529 copia 21 5254 6.0 10.0 8.0 2.3 5320 chr3L 2108209 intron sls - chr3L 2110869 intron sls - chr3L 2113529 intron sls - chr3L_21_2110001 chr3L_2110001 RAL-843 1591 chr3L 2139163 2139234 chr3L 2139288 2139365 30 129 8.5 8.5 8.5 3.2 202 chr3L 2139163 intron zormin - chr3L 2139264 intron zormin - chr3L 2139365 intron zormin - chr3L_30_2135001 chr3L_2135001 RAL-843 1592 chr3L 2168733 2168742 chr3L 2168873 2168883 5 141 32.0 9.0 20.5 0.2 150 chr3L 2168733 exon CG15879 - chr3L 2168808 intron CG15879 - chr3L 2168883 intron CG15879 - chr3L_5_2165001 chr3L_2165001 RAL-843 1593 chr3L 2168746 2168797 chr3L 2168871 2168938 30 140 12.0 9.0 10.5 2.6 192 chr3L 2168746 exon CG15879 - chr3L 2168842 intron CG15879 - chr3L 2168938 intron CG15879 - chr3L_30_2165001 chr3L_2165001 RAL-843 1594 chr3L 2277934 2278005 chr3L 2278180 2278251 41 245 8.0 9.5 8.8 4.2 317 chr3L 2277934 3` UTR yellow-g2 + chr3L 2278092 intergenic yellow-g2 + chr3L 2278251 intergenic yellow-g2 + chr3L_41_2275001 chr3L_2275001 RAL-843 1595 chr3L 2282944 2283019 chr3L 2283070 2283145 23 125 11.0 6.5 8.8 2.3 201 chr3L 2282944 5` UTR MsR2 + chr3L 2283044 5` UTR MsR2 + chr3L 2283145 5` UTR MsR2 + chr3L_23_2280001 chr3L_2280001 RAL-843 1596 chr3L 2307959 2308029 chr3L 2308115 2308185 24 155 7.5 9.5 8.5 2.5 226 chr3L 2307959 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308185 intergenic not near genes chr3L_24_2305001 chr3L_2305001 RAL-843 1597 chr3L 2321119 2321185 chr3L 2321246 2321310 24 124 9.5 13.0 11.2 2.0 191 chr3L 2321119 intergenic not near genes chr3L 2321214 intergenic not near genes chr3L 2321310 intergenic not near genes chr3L_24_2320001 chr3L_2320001 RAL-843 1598 chr3L 2331537 2331613 chr3L 2331664 2331674 42 124 9.0 10.5 9.8 3.9 137 chr3L 2331537 intron MsR1 + chr3L 2331606 intron MsR1 + chr3L 2331674 intron MsR1 + chr3L_42_2330001 chr3L_2330001 RAL-843 1599 chr3L 2355400 2355464 chr3L 2355638 2355702 14 233 3.5 0.0 1.8 5.0 302 chr3L 2355400 intergenic not near genes chr3L 2355551 intergenic not near genes chr3L 2355702 intergenic not near genes chr3L_14_2355001 chr3L_2355001 RAL-843 1600 chr3L 2411299 2411319 chr3L 2411429 2411447 8 130 7.0 14.0 10.5 0.7 148 chr3L 2411299 intron CG45186 + chr3L 2411373 intron CG45186 + chr3L 2411447 intron CG45186 + chr3L_8_2410001 chr3L_2410001 RAL-843 1601 chr3L 2411320 2411341 chr3L 2411415 2411456 9 121 5.0 11.5 8.2 1.0 136 chr3L 2411320 intron CG45186 + chr3L 2411388 intron CG45186 + chr3L 2411456 intron CG45186 + chr3L_9_2410001 chr3L_2410001 RAL-843 1602 chr3L 2447462 2447527 chr3L 2456668 2456714 roo 31 9201 7.5 10.5 9.0 3.1 9252 chr3L 2447462 intron CG45186 + chr3L 2452088 intron CG45186 + chr3L 2456714 intron CG45186 + chr3L_31_2450001 chr3L_2450001 RAL-843 1603 chr3L 2483104 2483161 chr3L 2483233 2483285 8 124 11.5 13.0 12.2 0.6 181 chr3L 2483104 intron CG45186 + chr3L 2483194 intron CG45186 + chr3L 2483285 intron CG45186 + chr3L_8_2480001 chr3L_2480001 RAL-843 1604 chr3L 2483569 2483628 chr3L 2483878 2483937 12 308 6.0 4.0 5.0 2.0 368 chr3L 2483569 intron CG45186 + chr3L 2483753 intron CG45186 + chr3L 2483937 intron CG45186 + chr3L_12_2480001 chr3L_2480001 RAL-843 1605 chr3L 2483629 2483633 chr3L 2483873 2483942 5 296 5.5 3.5 4.5 0.9 313 chr3L 2483629 intron CG45186 + chr3L 2483786 intron CG45186 + chr3L 2483942 intron CG45186 + chr3L_5_2480001 chr3L_2480001 RAL-843 1606 chr3L 2493778 2493845 chr3L 2493899 2493983 22 136 4.0 0.0 2.0 7.3 205 chr3L 2493778 intron CG45186 + chr3L 2493880 intron CG45186 + chr3L 2493983 intron CG45186 + chr3L_22_2490001 chr3L_2490001 RAL-843 1607 chr3L 2505365 2505427 chr3L 2505500 2505562 23 135 11.0 9.5 10.2 2.1 197 chr3L 2505365 3` UTR Spn - chr3L 2505464 3` UTR Spn - chr3L 2505562 3` UTR Spn - chr3L_23_2505001 chr3L_2505001 RAL-843 1608 chr3L 2515362 2515416 chr3L 2515496 2515548 30 133 8.5 8.0 8.2 3.3 186 chr3L 2515362 intron Spn - chr3L 2515455 intron Spn - chr3L 2515548 intron Spn - chr3L_30_2515001 chr3L_2515001 RAL-843 1609 chr3L 2523468 2523473 chr3L 2523591 2523603 5 126 21.5 9.5 15.5 0.3 135 chr3L 2523468 intron Spn - chr3L 2523536 intron Spn - chr3L 2523603 intron Spn - chr3L_5_2520001 chr3L_2520001 RAL-843 1610 chr3L 2523484 2523537 chr3L 2523589 2523667 22 127 8.0 9.0 8.5 2.3 183 chr3L 2523484 intron Spn - chr3L 2523576 intron Spn - chr3L 2523667 intron Spn - chr3L_22_2520001 chr3L_2520001 RAL-843 1611 chr3L 2533618 2533642 chr3L 2533744 2533774 8 127 22.5 15.0 18.8 0.4 156 chr3L 2533618 intron Spn - chr3L 2533696 intron Spn - chr3L 2533774 intron Spn - chr3L_8_2530001 chr3L_2530001 RAL-843 1612 chr3L 2533646 2533676 chr3L 2533741 2533758 8 111 15.0 15.0 15.0 0.5 112 chr3L 2533646 intron Spn - chr3L 2533702 intron Spn - chr3L 2533758 intron Spn - chr3L_8_2530001 chr3L_2530001 RAL-843 1613 chr3L 2561486 2561556 chr3L 2561613 2561683 29 126 7.5 9.0 8.2 3.2 197 chr3L 2561486 intron msn - chr3L 2561584 intron msn - chr3L 2561683 intron msn - chr3L_29_2560001 chr3L_2560001 RAL-843 1614 chr3L 2581850 2581913 chr3L 2581994 2582057 10 143 6.0 5.5 5.8 1.5 207 chr3L 2581850 intron msn - chr3L 2581954 intron msn - chr3L 2582057 intron msn - chr3L_10_2580001 chr3L_2580001 RAL-843 1615 chr3L 2617214 2617261 chr3L 2617350 2617397 21 136 9.5 12.0 10.8 1.8 183 chr3L 2617214 intron Pxn - chr3L 2617306 intron Pxn - chr3L 2617397 intron Pxn - chr3L_21_2615001 chr3L_2615001 RAL-843 1616 chr3L 2626365 2626445 chr3L 2626539 2626619 20 173 8.5 8.5 8.5 2.1 254 chr3L 2626365 intron Pxn - chr3L 2626492 intron Pxn - chr3L 2626619 intron Pxn - chr3L_20_2625001 chr3L_2625001 RAL-843 1617 chr3L 2633216 2633249 chr3L 2633373 2633406 15 157 7.5 0.0 3.8 3.1 190 chr3L 2633216 intron,intron CG42245 +,MEP-1 + chr3L 2633311 intron,intron CG42245 +,MEP-1 + chr3L 2633406 intron,intron CG42245 +,MEP-1 + chr3L_15_2630001 chr3L_2630001 RAL-843 1618 chr3L 2683900 2683973 chr3L 2684026 2684099 28 125 8.0 8.0 8.0 3.1 199 chr3L 2683900 intron Fife - chr3L 2684000 intron Fife - chr3L 2684099 intron Fife - chr3L_28_2680001 chr3L_2680001 RAL-843 1619 chr3L 2698377 2698554 chr3L 2698520 2698681 24 132 3.0 7.0 5.0 4.0 304 chr3L 2698377 intron Fife - chr3L 2698529 intron Fife - chr3L 2698681 intron Fife - chr3L_24_2695001 chr3L_2695001 RAL-843 1620 chr3L 2699481 2699553 chr3L 2699628 2699701 27 146 9.5 6.5 8.0 3.0 220 chr3L 2699481 intron Fife - chr3L 2699591 intron Fife - chr3L 2699701 intron Fife - chr3L_27_2695001 chr3L_2695001 RAL-843 1621 chr3L 2719500 2719557 chr3L 2719647 2719709 14 150 7.0 4.5 5.8 2.1 209 chr3L 2719500 3` UTR Mrtf - chr3L 2719604 3` UTR Mrtf - chr3L 2719709 3` UTR Mrtf - chr3L_14_2715001 chr3L_2715001 RAL-843 1622 chr3L 2751417 2751457 chr3L 2755762 2755802 F-element 18 4344 12.0 16.5 14.2 1.2 4385 chr3L 2751417 intron Mrtf - chr3L 2753610 intron Mrtf - chr3L 2755802 intron Mrtf - chr3L_18_2750001 chr3L_2750001 RAL-843 1623 chr3L 2766686 2766764 chr3L 2766833 2766904 26 147 5.5 6.0 5.8 3.8 218 chr3L 2766686 intergenic Mrtf -,Non2 + chr3L 2766795 intergenic Non2 +,Mrtf - chr3L 2766904 intergenic Non2 +,Mrtf - chr3L_26_2765001 chr3L_2765001 RAL-843 1624 chr3L 2795679 2795721 chr3L 2795853 2795894 7 173 8.5 4.5 6.5 0.9 215 chr3L 2795679 intron CG43444 - chr3L 2795786 intron CG43444 - chr3L 2795894 intron CG43444 - chr3L_7_2795001 chr3L_2795001 RAL-843 1625 chr3L 2812303 2812365 chr3L 2812435 2812499 22 131 6.5 10.5 8.5 2.3 196 chr3L 2812303 intron CG43444 - chr3L 2812401 intron CG43444 - chr3L 2812499 intron CG43444 - chr3L_22_2810001 chr3L_2810001 RAL-843 1626 chr3L 2834715 2834758 chr3L 2834927 2834940 8 207 6.5 2.0 4.2 1.5 225 chr3L 2834715 intron CG43444 - chr3L 2834828 intron CG43444 - chr3L 2834940 intron CG43444 - chr3L_8_2830001 chr3L_2830001 RAL-843 1627 chr3L 2835826 2835836 chr3L 2835964 2835972 5 138 8.5 12.5 10.5 0.4 146 chr3L 2835826 intron CG43444 - chr3L 2835899 intron CG43444 - chr3L 2835972 intron CG43444 - chr3L_5_2835001 chr3L_2835001 RAL-843 1628 chr3L 2835838 2835865 chr3L 2835958 2835966 7 127 4.0 11.5 7.8 0.8 128 chr3L 2835838 intron CG43444 - chr3L 2835902 intron CG43444 - chr3L 2835966 intron CG43444 - chr3L_7_2835001 chr3L_2835001 RAL-843 1629 chr3L 2854438 2854504 chr3L 2854555 2854592 24 118 5.5 7.5 6.5 3.2 154 chr3L 2854438 intron CG43444 - chr3L 2854515 intron CG43444 - chr3L 2854592 intron CG43444 - chr3L_24_2850001 chr3L_2850001 RAL-843 1630 chr3L 2899532 2899599 chr3L 2899693 2899762 32 162 6.0 6.5 6.2 4.4 230 chr3L 2899532 intron Shab + chr3L 2899647 intron Shab + chr3L 2899762 intron Shab + chr3L_32_2895001 chr3L_2895001 RAL-843 1631 chr3L 2927798 2927806 chr3L 2936125 2936133 Tirant 6 8327 16.0 8.5 12.2 0.5 8335 chr3L 2927798 intron Shab + chr3L 2931966 intron Shab + chr3L 2936133 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-843 1632 chr3L 2927810 2927870 chr3L 2936122 2936196 Tirant 18 8325 6.0 6.5 6.2 2.5 8386 chr3L 2927810 intron Shab + chr3L 2932003 intron Shab + chr3L 2936196 intron Shab + chr3L_18_2930001 chr3L_2930001 RAL-843 1633 chr3L 2965964 2966034 chr3L 2966096 2966166 31 129 7.0 7.0 7.0 3.9 202 chr3L 2965964 intergenic not near genes chr3L 2966065 intergenic not near genes chr3L 2966166 intergenic not near genes chr3L_31_2965001 chr3L_2965001 RAL-843 1634 chr3L 2966677 2966724 chr3L 2974154 2974204 mdg1 12 7478 11.0 1.0 6.0 1.7 7527 chr3L 2966677 intergenic not near genes chr3L 2970440 intergenic not near genes chr3L 2974204 intergenic not near genes chr3L_12_2970001 chr3L_2970001 RAL-843 1635 chr3L 3027553 3027624 chr3L 3028604 3028675 29 1049 8.5 11.0 9.8 2.7 1122 chr3L 3027553 intergenic not near genes chr3L 3028114 intergenic not near genes chr3L 3028675 intergenic not near genes chr3L_29_3025001 chr3L_3025001 RAL-843 1636 chr3L 3028956 3029022 chr3L 3029092 3029158 6 136 3.0 1.0 2.0 2.0 202 chr3L 3028956 intergenic not near genes chr3L 3029057 intergenic not near genes chr3L 3029158 intergenic not near genes chr3L_6_3025001 chr3L_3025001 RAL-843 1637 chr3L 3040326 3040354 chr3L 3042120 3042197 S-element 8 1837 6.0 0.5 3.2 1.9 1871 chr3L 3040326 3` UTR CG2162 + chr3L 3041262 intergenic not near genes chr3L 3042197 intergenic Jafrac2 + chr3L_8_3040001 chr3L_3040001 RAL-843 1638 chr3L 3051701 3051754 chr3L 3051993 3052050 pogo 13 294 18.5 9.5 14.0 0.9 349 chr3L 3051701 3` UTR CG32485 + chr3L 3051876 intergenic CG32485 + chr3L 3052050 intergenic CG32485 +,CG1271 + chr3L_13_3050001 chr3L_3050001 RAL-843 1639 chr3L 3061256 3061266 chr3L 3069872 3069899 Tirant 4 8622 22.5 6.0 14.2 0.3 8643 chr3L 3061256 intron CG32486 - chr3L 3065578 intron CG32486 - chr3L 3069899 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-843 1640 chr3L 3061273 3061313 chr3L 3069866 3069914 Tirant 12 8616 12.5 6.0 9.2 1.2 8641 chr3L 3061273 intron CG32486 - chr3L 3065594 intron CG32486 - chr3L 3069914 intron CG32486 - chr3L_12_3065001 chr3L_3065001 RAL-843 1641 chr3L 3075889 3075933 chr3L 3075995 3076058 5 116 7.0 12.5 9.8 0.5 169 chr3L 3075889 intron CG11486 + chr3L 3075974 intron CG11486 + chr3L 3076058 intron CG11486 + chr3L_5_3075001 chr3L_3075001 RAL-843 1642 chr3L 3097138 3097221 chr3L 3097275 3097355 17 135 1.0 8.0 4.5 3.1 217 chr3L 3097138 intron Cht7 - chr3L 3097246 intron Cht7 - chr3L 3097355 intron Cht7 - chr3L_17_3095001 chr3L_3095001 RAL-843 1643 chr3L 3125731 3125807 chr3L 3125862 3125922 37 130 5.0 8.5 6.8 4.7 191 chr3L 3125731 intron prominin-like - chr3L 3125826 intron prominin-like - chr3L 3125922 intron prominin-like - chr3L_37_3125001 chr3L_3125001 RAL-843 1644 chr3L 3165309 3165377 chr3L 3165442 3165510 28 131 8.0 11.0 9.5 2.7 201 chr3L 3165309 intron,intron Asciz -,CG32280 + chr3L 3165410 intron,intron Asciz -,CG32280 + chr3L 3165510 intron,intron Asciz -,CG32280 + chr3L_28_3165001 chr3L_3165001 RAL-843 1645 chr3L 3246831 3246891 chr3L 3246968 3247030 20 137 6.5 11.5 9.0 2.0 199 chr3L 3246831 intergenic not near genes chr3L 3246930 intergenic not near genes chr3L 3247030 intergenic not near genes chr3L_20_3245001 chr3L_3245001 RAL-843 1646 chr3L 3247585 3247604 chr3L 3247717 3247736 7 132 6.0 13.5 9.8 0.6 151 chr3L 3247585 intergenic CG43389 + chr3L 3247660 intergenic CG43389 + chr3L 3247736 intergenic CG43389 + chr3L_7_3245001 chr3L_3245001 RAL-843 1647 chr3L 3252292 3252375 chr3L 3252418 3252492 7 125 4.0 5.0 4.5 1.3 200 chr3L 3252292 5` UTR CR43626 + chr3L 3252392 5` UTR CR43626 + chr3L 3252492 5` UTR CR43626 + chr3L_7_3250001 chr3L_3250001 RAL-843 1648 chr3L 3259815 3259830 chr3L 3259966 3259981 9 151 5.0 14.5 9.8 0.8 166 chr3L 3259815 intron ckd + chr3L 3259898 intron ckd + chr3L 3259981 intron ckd + chr3L_9_3255001 chr3L_3255001 RAL-843 1649 chr3L 3281402 3281470 chr3L 3281938 3281995 Doc 18 536 7.5 11.5 9.5 1.7 593 chr3L 3281402 intron CG12017 + chr3L 3281698 intron CG12017 + chr3L 3281995 intron CG12017 + chr3L_18_3280001 chr3L_3280001 RAL-843 1650 chr3L 3285595 3285667 chr3L 3285728 3285800 34 133 9.5 8.5 9.0 3.4 205 chr3L 3285595 intron CG12017 + chr3L 3285698 intron CG12017 + chr3L 3285800 intron CG12017 + chr3L_34_3285001 chr3L_3285001 RAL-843 1651 chr3L 3314093 3314161 chr3L 3314277 3314345 60 179 24.5 29.0 26.8 2.2 252 chr3L 3314093 intergenic ZnT63C +,Drsl2 + chr3L 3314219 intergenic Drsl2 +,ZnT63C + chr3L 3314345 intergenic Drsl2 +,ZnT63C + chr3L_60_3310001 chr3L_3310001 RAL-843 1652 chr3L 3312275 3312318 chr3L 3315506 3315566 24 3236 49.0 75.5 62.2 0.4 3291 chr3L 3312275 exon ZnT63C + chr3L 3313920 3` UTR ZnT63C + chr3L 3315566 intergenic Drsl4 +,Drsl3 + chr3L_24_3310001 chr3L_3310001 RAL-843 1653 chr3L 3312266 3312317 chr3L 3315568 3315578 10 3254 50.0 58.0 54.0 0.2 3312 chr3L 3312266 exon ZnT63C + chr3L 3313922 3` UTR ZnT63C + chr3L 3315578 intergenic Drsl4 +,Drsl3 + chr3L_10_3310001 chr3L_3310001 RAL-843 1654 chr3L 3315934 3315999 chr3L 3316085 3316149 12 150 3.0 8.0 5.5 1.8 215 chr3L 3315934 3` UTR Drsl4 + chr3L 3316042 intergenic Drsl4 + chr3L 3316149 intergenic Drsl4 + chr3L_12_3315001 chr3L_3315001 RAL-843 1655 chr3L 3329216 3329284 chr3L 3329351 3329416 29 129 10.0 4.5 7.2 3.5 200 chr3L 3329216 intergenic CR45380 +,CG11526 - chr3L 3329316 5` UTR CR45380 + chr3L 3329416 5` UTR CR45380 + chr3L_29_3325001 chr3L_3325001 RAL-843 1656 chr3L 3335683 3335692 chr3L 3335878 3335884 8 196 24.0 11.0 17.5 0.4 201 chr3L 3335683 exon Drsl1 - chr3L 3335784 exon Drsl1 - chr3L 3335884 intergenic Drsl1 -,Drsl6 - chr3L_8_3335001 chr3L_3335001 RAL-843 1657 chr3L 3335695 3335744 chr3L 3335872 3335942 25 194 12.0 7.5 9.8 2.3 247 chr3L 3335695 exon Drsl1 - chr3L 3335818 intergenic Drsl1 -,Drsl6 - chr3L 3335942 intergenic Drsl6 -,Drsl1 - chr3L_25_3335001 chr3L_3335001 RAL-843 1658 chr3L 3341216 3341294 chr3L 3341346 3341424 33 129 14.0 11.5 12.8 2.4 208 chr3L 3341216 intron kst + chr3L 3341320 intron kst + chr3L 3341424 intron kst + chr3L_33_3340001 chr3L_3340001 RAL-843 1659 chr3L 3436240 3436315 chr3L 3436369 3436444 25 129 5.5 8.0 6.8 3.2 204 chr3L 3436240 intron eIF5B - chr3L 3436342 intron eIF5B - chr3L 3436444 intron eIF5B - chr3L_25_3435001 chr3L_3435001 RAL-843 1660 chr3L 3437736 3437799 chr3L 3437869 3437932 34 131 7.5 13.5 10.5 3.0 196 chr3L 3437736 intron eIF5B - chr3L 3437834 intron eIF5B - chr3L 3437932 intron eIF5B - chr3L_34_3435001 chr3L_3435001 RAL-843 1661 chr3L 3449215 3449235 chr3L 3449343 3449363 10 128 7.5 4.5 6.0 1.4 148 chr3L 3449215 intron eIF5B - chr3L 3449289 intron eIF5B - chr3L 3449363 intron eIF5B - chr3L_10_3445001 chr3L_3445001 RAL-843 1662 chr3L 3451330 3451401 chr3L 3451480 3451551 27 150 8.0 5.5 6.8 3.5 221 chr3L 3451330 intron eIF5B - chr3L 3451440 intron eIF5B - chr3L 3451551 intron eIF5B - chr3L_27_3450001 chr3L_3450001 RAL-843 1663 chr3L 3451750 3451792 chr3L 3451878 3451900 15 121 15.0 12.5 13.8 1.0 150 chr3L 3451750 intron eIF5B - chr3L 3451825 intron eIF5B - chr3L 3451900 intron eIF5B - chr3L_15_3450001 chr3L_3450001 RAL-843 1664 chr3L 3451796 3451816 chr3L 3451874 3451923 14 109 8.5 12.5 10.5 1.2 127 chr3L 3451796 intron eIF5B - chr3L 3451860 intron eIF5B - chr3L 3451923 intron eIF5B - chr3L_14_3450001 chr3L_3450001 RAL-843 1665 chr3L 3470127 3470187 chr3L 3470253 3470300 24 125 3.5 9.0 6.2 3.3 173 chr3L 3470127 intron CG14971 - chr3L 3470214 intron CG14971 - chr3L 3470300 intron CG14971 - chr3L_24_3470001 chr3L_3470001 RAL-843 1666 chr3L 3475036 3475044 chr3L 3475530 3475538 jockey 4 494 21.0 11.5 16.2 0.2 502 chr3L 3475036 intron CG42324 + chr3L 3475287 intron CG42324 + chr3L 3475538 intron CG42324 + chr3L_4_3475001 chr3L_3475001 RAL-843 1667 chr3L 3475049 3475108 chr3L 3475529 3475541 jockey 15 484 7.0 11.5 9.2 1.5 492 chr3L 3475049 intron CG42324 + chr3L 3475295 intron CG42324 + chr3L 3475541 intron CG42324 + chr3L_15_3475001 chr3L_3475001 RAL-843 1668 chr3L 3484372 3484442 chr3L 3484499 3484569 32 127 6.0 9.5 7.8 3.6 197 chr3L 3484372 intron,exon CG42324 +,CG43074 - chr3L 3484470 intron,exon CG42324 +,CG43074 - chr3L 3484569 intron,exon CG42324 +,CG43074 - chr3L_32_3480001 chr3L_3480001 RAL-843 1669 chr3L 3494146 3494203 chr3L 3494273 3494330 22 127 0.0 4.5 2.2 6.9 184 chr3L 3494146 intron CG42324 + chr3L 3494238 intron CG42324 + chr3L 3494330 intron CG42324 + chr3L_22_3490001 chr3L_3490001 RAL-843 1670 chr3L 3512916 3512979 chr3L 3513046 3513109 21 130 6.0 9.5 7.8 2.4 193 chr3L 3512916 intergenic ImpE2 - chr3L 3513012 intergenic ImpE2 - chr3L 3513109 intergenic ImpE2 - chr3L_21_3510001 chr3L_3510001 RAL-843 1671 chr3L 3530655 3530733 chr3L 3530783 3530861 27 128 5.0 5.0 5.0 4.5 206 chr3L 3530655 intron Eip63E + chr3L 3530758 intron Eip63E + chr3L 3530861 intron Eip63E + chr3L_27_3530001 chr3L_3530001 RAL-843 1672 chr3L 3573118 3573186 chr3L 3573251 3573319 21 132 5.0 6.0 5.5 3.2 201 chr3L 3573118 intron Eip63E + chr3L 3573218 intron Eip63E + chr3L 3573319 intron Eip63E + chr3L_21_3570001 chr3L_3570001 RAL-843 1673 chr3L 3593845 3593890 chr3L 3593980 3594003 10 133 8.0 0.0 4.0 2.0 158 chr3L 3593845 intron,5` UTR Eip63E +,snRNA:U7 + chr3L 3593924 intron Eip63E + chr3L 3594003 intron Eip63E + chr3L_10_3590001 chr3L_3590001 RAL-843 1674 chr3L 3601266 3601272 chr3L 3606627 3606633 copia 4 5361 18.5 7.5 13.0 0.3 5367 chr3L 3601266 intron Eip63E + chr3L 3603950 intron Eip63E + chr3L 3606633 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-843 1675 chr3L 3601275 3601310 chr3L 3606617 3606671 copia 17 5360 13.0 7.0 10.0 1.5 5396 chr3L 3601275 intron Eip63E + chr3L 3603973 intron Eip63E + chr3L 3606671 intron Eip63E + chr3L_17_3600001 chr3L_3600001 RAL-843 1676 chr3L 3619368 3619399 chr3L 3619512 3619543 13 144 18.5 4.5 11.5 1.0 175 chr3L 3619368 intergenic not near genes chr3L 3619456 intergenic not near genes chr3L 3619543 intergenic not near genes chr3L_13_3615001 chr3L_3615001 RAL-843 1677 chr3L 3619401 3619422 chr3L 3619509 3619566 4 135 10.5 4.0 7.2 0.5 165 chr3L 3619401 intergenic not near genes chr3L 3619484 intergenic not near genes chr3L 3619566 intergenic not near genes chr3L_4_3615001 chr3L_3615001 RAL-843 1678 chr3L 3622261 3622298 chr3L 3622390 3622427 6 128 11.5 0.0 5.8 0.9 166 chr3L 3622261 intergenic not near genes chr3L 3622344 intergenic not near genes chr3L 3622427 intergenic not near genes chr3L_6_3620001 chr3L_3620001 RAL-843 1679 chr3L 3627186 3627259 chr3L 3627341 3627414 23 154 4.0 10.0 7.0 2.9 228 chr3L 3627186 intron dar1 + chr3L 3627300 intron dar1 + chr3L 3627414 intron dar1 + chr3L_23_3625001 chr3L_3625001 RAL-843 1680 chr3L 3688549 3688614 chr3L 3688773 3688822 32 223 8.5 7.0 7.8 3.6 273 chr3L 3688549 intergenic CR43484 + chr3L 3688686 intergenic CR43484 + chr3L 3688822 5` UTR CR43484 + chr3L_32_3685001 chr3L_3685001 RAL-843 1681 chr3L 3763710 3763753 chr3L 3763841 3763854 16 128 10.5 0.0 5.2 2.6 144 chr3L 3763710 intron CG32264 - chr3L 3763782 intron CG32264 - chr3L 3763854 intron CG32264 - chr3L_16_3760001 chr3L_3760001 RAL-843 1682 chr3L 3766690 3766761 chr3L 3766826 3766897 12 136 3.5 8.5 6.0 1.7 207 chr3L 3766690 intron CG32264 - chr3L 3766794 intron CG32264 - chr3L 3766897 intron CG32264 - chr3L_12_3765001 chr3L_3765001 RAL-843 1683 chr3L 3773579 3773665 chr3L 3773708 3773796 13 133 5.0 2.0 3.5 2.9 217 chr3L 3773579 intron CG32264 - chr3L 3773688 intron CG32264 - chr3L 3773796 intron CG32264 - chr3L_13_3770001 chr3L_3770001 RAL-843 1684 chr3L 3783220 3783289 chr3L 3783347 3783409 20 123 7.5 6.0 6.8 2.6 189 chr3L 3783220 intron CG32264 - chr3L 3783314 intron CG32264 - chr3L 3783409 intron CG32264 - chr3L_20_3780001 chr3L_3780001 RAL-843 1685 chr3L 3798006 3798040 chr3L 3798120 3798170 18 128 15.5 9.0 12.2 1.4 164 chr3L 3798006 intron CG32264 - chr3L 3798088 intron CG32264 - chr3L 3798170 intron CG32264 - chr3L_18_3795001 chr3L_3795001 RAL-843 1686 chr3L 3833690 3833770 chr3L 3833981 3834061 pogo 16 289 5.5 3.0 4.2 3.1 371 chr3L 3833690 intron enc + chr3L 3833876 intron enc + chr3L 3834061 intron enc + chr3L_16_3830001 chr3L_3830001 RAL-843 1687 chr3L 3877424 3877468 chr3L 3877587 3877641 13 172 2.5 8.5 5.5 2.0 217 chr3L 3877424 intergenic not near genes chr3L 3877532 intergenic not near genes chr3L 3877641 intergenic not near genes chr3L_13_3875001 chr3L_3875001 RAL-843 1688 chr3L 3921348 3921414 chr3L 3921662 3921723 21 311 3.0 8.5 5.8 3.1 375 chr3L 3921348 intron Eip63F-1 - chr3L 3921536 intron Eip63F-1 - chr3L 3921723 intron Eip63F-1 - chr3L_21_3920001 chr3L_3920001 RAL-843 1689 chr3L 3935810 3935839 chr3L 3935938 3935967 14 128 0.0 1.5 0.8 7.8 157 chr3L 3935810 5` UTR Eip63F-2 + chr3L 3935888 5` UTR Eip63F-2 + chr3L 3935967 5` UTR Eip63F-2 + chr3L_14_3935001 chr3L_3935001 RAL-843 1690 chr3L 4056836 4056857 chr3L 4057019 4057040 12 182 24.5 5.0 14.8 0.8 204 chr3L 4056836 intron CG1136 + chr3L 4056938 intron CG1136 + chr3L 4057040 intron CG1136 + chr3L_12_4055001 chr3L_4055001 RAL-843 1691 chr3L 4056858 4056913 chr3L 4057018 4057090 12 176 6.0 5.0 5.5 1.8 232 chr3L 4056858 intron CG1136 + chr3L 4056974 intron CG1136 + chr3L 4057090 intron CG1136 + chr3L_12_4055001 chr3L_4055001 RAL-843 1692 chr3L 4146807 4146836 chr3L 4146939 4146968 10 132 0.5 13.5 7.0 1.2 161 chr3L 4146807 intergenic not near genes chr3L 4146888 intergenic not near genes chr3L 4146968 intergenic not near genes chr3L_10_4145001 chr3L_4145001 RAL-843 1693 chr3L 4195093 4195095 chr3L 4195247 4195249 4 154 25.5 11.5 18.5 0.2 156 chr3L 4195093 exon CG43367 + chr3L 4195171 intron CG43367 + chr3L 4195249 intron CG43367 + chr3L_4_4195001 chr3L_4195001 RAL-843 1694 chr3L 4195098 4195165 chr3L 4195241 4195313 30 147 8.5 10.5 9.5 2.9 215 chr3L 4195098 exon CG43367 + chr3L 4195206 intron CG43367 + chr3L 4195313 exon CG43367 + chr3L_30_4195001 chr3L_4195001 RAL-843 1695 chr3L 4328686 4328757 chr3L 4336235 4336297 412 19 7548 1.0 6.5 3.8 4.0 7611 chr3L 4328686 intron Cip4 - chr3L 4332492 intron Cip4 - chr3L 4336297 exon Cip4 - chr3L_19_4330001 chr3L_4330001 RAL-843 1696 chr3L 4341331 4341335 chr3L 21448026 21448026 7 17106694 35.5 41.0 38.2 0.2 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_7_12890001 chr3L_12890001 RAL-843 1697 chr3L 4342363 4342381 chr3L 4342492 4342510 6 126 19.5 12.5 16.0 0.4 147 chr3L 4342363 intron Cip4 - chr3L 4342436 intron Cip4 - chr3L 4342510 intron Cip4 - chr3L_6_4340001 chr3L_4340001 RAL-843 1698 chr3L 4342388 4342439 chr3L 4342490 4342548 29 122 10.5 12.0 11.2 2.4 160 chr3L 4342388 intron Cip4 - chr3L 4342468 intron Cip4 - chr3L 4342548 intron Cip4 - chr3L_29_4340001 chr3L_4340001 RAL-843 1699 chr3L 4344849 4344906 chr3L 4345009 4345051 13 151 6.5 0.0 3.2 3.1 202 chr3L 4344849 intron Cip4 - chr3L 4344950 intron Cip4 - chr3L 4345051 intron Cip4 - chr3L_13_4340001 chr3L_4340001 RAL-843 1700 chr3L 4481108 4481110 chr3L 4481361 4481373 4 264 56.5 17.5 37.0 0.1 265 chr3L 4481108 exon CG7465 + chr3L 4481240 exon CG7465 + chr3L 4481373 exon CG7465 + chr3L_4_4480001 chr3L_4480001 RAL-843 1701 chr3L 4491835 4491865 chr3L 4491969 4491999 15 133 18.0 5.5 11.8 1.2 164 chr3L 4491835 intergenic not near genes chr3L 4491917 intergenic not near genes chr3L 4491999 intergenic not near genes chr3L_15_4490001 chr3L_4490001 RAL-843 1702 chr3L 4491873 4491912 chr3L 4492007 4492046 28 131 7.5 15.0 11.2 2.3 173 chr3L 4491873 intergenic not near genes chr3L 4491960 intergenic not near genes chr3L 4492046 intergenic not near genes chr3L_28_4490001 chr3L_4490001 RAL-843 1703 chr3L 4529185 4529219 chr3L 4529317 4529341 13 130 12.5 10.0 11.2 1.1 156 chr3L 4529185 intron Tie - chr3L 4529263 intron Tie - chr3L 4529341 intron Tie - chr3L_13_4525001 chr3L_4525001 RAL-843 1704 chr3L 4607218 4607292 chr3L 4607359 4607433 26 141 9.5 8.0 8.8 2.7 215 chr3L 4607218 intron Src64B - chr3L 4607326 intron Src64B - chr3L 4607433 intron Src64B - chr3L_26_4605001 chr3L_4605001 RAL-843 1705 chr3L 4691868 4691939 chr3L 4692008 4692077 9 140 0.5 0.0 0.2 7.5 209 chr3L 4691868 intergenic not near genes chr3L 4691972 intergenic not near genes chr3L 4692077 intergenic not near genes chr3L_9_4690001 chr3L_4690001 RAL-843 1706 chr3L 4773630 4773640 chr3L 4774401 4774410 Rt1a 6 771 27.0 16.5 21.8 0.3 780 chr3L 4773630 intron RhoGEF64C + chr3L 4774020 intron RhoGEF64C + chr3L 4774410 intron RhoGEF64C + chr3L_6_4770001 chr3L_4770001 RAL-843 1707 chr3L 4775809 4775871 chr3L 4775932 4776009 28 136 8.5 6.5 7.5 3.3 200 chr3L 4775809 intron RhoGEF64C + chr3L 4775909 intron RhoGEF64C + chr3L 4776009 intron RhoGEF64C + chr3L_28_4775001 chr3L_4775001 RAL-843 1708 chr3L 4837047 4837069 chr3L 4837189 4837225 10 154 15.0 7.0 11.0 0.8 178 chr3L 4837047 intergenic not near genes chr3L 4837136 intergenic not near genes chr3L 4837225 intergenic not near genes chr3L_10_4835001 chr3L_4835001 RAL-843 1709 chr3L 4837074 4837091 chr3L 4837185 4837202 11 142 10.5 5.0 7.8 1.2 128 chr3L 4837074 intergenic not near genes chr3L 4837138 intergenic not near genes chr3L 4837202 intergenic not near genes chr3L_11_4835001 chr3L_4835001 RAL-843 1710 chr3L 4858267 4858328 chr3L 4858407 4858466 30 134 12.0 11.5 11.8 2.3 199 chr3L 4858267 intergenic not near genes chr3L 4858366 intergenic not near genes chr3L 4858466 intergenic not near genes chr3L_30_4855001 chr3L_4855001 RAL-843 1711 chr3L 4901088 4901156 chr3L 4907328 4907396 diver 17 6239 10.0 6.0 8.0 1.9 6308 chr3L 4901088 intergenic CG13704 + chr3L 4904242 intergenic not near genes chr3L 4907396 intergenic not near genes chr3L_17_4900001 chr3L_4900001 RAL-843 1712 chr3L 4930670 4930713 chr3L 4930794 4930858 19 140 0.0 11.5 5.8 2.8 188 chr3L 4930670 intron CR43627 - chr3L 4930764 intron CR43627 - chr3L 4930858 intron CR43627 - chr3L_19_4930001 chr3L_4930001 RAL-843 1713 chr3L 4990696 4990779 chr3L 4990860 4990893 32 158 6.0 6.5 6.2 4.4 197 chr3L 4990696 intron Con - chr3L 4990794 intron Con - chr3L 4990893 intron Con - chr3L_32_4990001 chr3L_4990001 RAL-843 1714 chr3L 5034118 5034180 chr3L 5043320 5043382 roo 21 9201 6.0 5.5 5.8 3.1 9264 chr3L 5034118 intron Con - chr3L 5038750 intron Con - chr3L 5043382 intron Con - chr3L_21_5035001 chr3L_5035001 RAL-843 1715 chr3L 5045407 5045484 chr3L 5050238 5050315 Doc 9 4831 12.0 8.0 10.0 0.8 4908 chr3L 5045407 5` UTR Con - chr3L 5047861 intron Con - chr3L 5050315 intron Con - chr3L_9_5045001 chr3L_5045001 RAL-843 1716 chr3L 5066234 5066251 chr3L 5066394 5066411 8 160 5.5 3.0 4.2 1.5 177 chr3L 5066234 intron Con - chr3L 5066322 intron Con - chr3L 5066411 intron Con - chr3L_8_5065001 chr3L_5065001 RAL-843 1717 chr3L 5080941 5080945 chr3L 5081071 5081075 4 130 8.5 0.0 4.2 0.8 134 chr3L 5080941 intergenic not near genes chr3L 5081008 intergenic not near genes chr3L 5081075 intergenic not near genes chr3L_4_5080001 chr3L_5080001 RAL-843 1718 chr3L 5089059 5089148 chr3L 5089191 5089276 14 129 0.0 0.0 0.0 14.0 217 chr3L 5089059 intergenic not near genes chr3L 5089168 intergenic not near genes chr3L 5089276 intergenic not near genes chr3L_14_5085001 chr3L_5085001 RAL-843 1719 chr3L 5101153 5101227 chr3L 5101281 5101357 18 129 5.0 8.0 6.5 2.4 204 chr3L 5101153 intergenic not near genes chr3L 5101255 intergenic not near genes chr3L 5101357 intergenic not near genes chr3L_18_5100001 chr3L_5100001 RAL-843 1720 chr3L 5103564 5103584 chr3L 5103694 5103714 11 130 15.5 0.0 7.8 1.2 150 chr3L 5103564 intergenic not near genes chr3L 5103639 intergenic not near genes chr3L 5103714 intergenic not near genes chr3L_11_5100001 chr3L_5100001 RAL-843 1721 chr3L 5104475 5104511 chr3L 5124644 5124695 14 20183 0.0 11.5 5.8 2.1 20220 chr3L 5104475 intergenic not near genes chr3L 5114585 intergenic not near genes chr3L 5124695 intergenic not near genes chr3L_14_5110001 chr3L_5110001 RAL-843 1722 chr3L 5186833 5186896 chr3L 5187169 5187232 26 334 7.0 11.5 9.2 2.5 399 chr3L 5186833 intron shep - chr3L 5187032 intron shep - chr3L 5187232 intron shep - chr3L_26_5185001 chr3L_5185001 RAL-843 1723 chr3L 5205854 5205921 chr3L 5205984 5206051 29 129 11.0 6.5 8.8 3.0 197 chr3L 5205854 intron shep - chr3L 5205952 intron shep - chr3L 5206051 intron shep - chr3L_29_5205001 chr3L_5205001 RAL-843 1724 chr3L 5212192 5212265 chr3L 5212325 5212398 36 130 7.5 9.0 8.2 3.9 206 chr3L 5212192 intron shep - chr3L 5212295 intron shep - chr3L 5212398 intron shep - chr3L_36_5210001 chr3L_5210001 RAL-843 1725 chr3L 5251810 5251867 chr3L 5251939 5251996 8 126 6.0 7.0 6.5 1.1 186 chr3L 5251810 intron shep - chr3L 5251903 intron shep - chr3L 5251996 intron shep - chr3L_8_5250001 chr3L_5250001 RAL-843 1726 chr3L 5261119 5261174 chr3L 5261248 5261303 19 129 9.5 3.5 6.5 2.5 184 chr3L 5261119 intron shep - chr3L 5261211 intron shep - chr3L 5261303 intron shep - chr3L_19_5260001 chr3L_5260001 RAL-843 1727 chr3L 5280086 5280118 chr3L 5280278 5280310 9 192 0.0 3.0 1.5 3.6 224 chr3L 5280086 intergenic not near genes chr3L 5280198 intergenic not near genes chr3L 5280310 intergenic not near genes chr3L_9_5280001 chr3L_5280001 RAL-843 1728 chr3L 5327417 5327478 chr3L 5327552 5327613 20 135 8.5 6.0 7.2 2.4 196 chr3L 5327417 intergenic not near genes chr3L 5327515 intergenic not near genes chr3L 5327613 intergenic not near genes chr3L_20_5325001 chr3L_5325001 RAL-843 1729 chr3L 5375996 5376033 chr3L 5376121 5376162 18 129 10.0 7.0 8.5 1.9 166 chr3L 5375996 intergenic not near genes chr3L 5376079 intergenic not near genes chr3L 5376162 intergenic not near genes chr3L_18_5375001 chr3L_5375001 RAL-843 1730 chr3L 5393423 5393474 chr3L 5393635 5393686 7 212 4.0 5.5 4.8 1.2 263 chr3L 5393423 intergenic not near genes chr3L 5393554 intergenic not near genes chr3L 5393686 intergenic not near genes chr3L_7_5390001 chr3L_5390001 RAL-843 1731 chr3L 5396423 5396497 chr3L 5396560 5396634 26 137 9.5 5.5 7.5 3.1 211 chr3L 5396423 intergenic not near genes chr3L 5396528 intergenic not near genes chr3L 5396634 intergenic not near genes chr3L_26_5395001 chr3L_5395001 RAL-843 1732 chr3L 5484999 5485071 chr3L 5485131 5485193 28 132 9.0 7.5 8.2 3.0 194 chr3L 5484999 intergenic not near genes chr3L 5485096 intergenic not near genes chr3L 5485193 intergenic not near genes chr3L_28_5485001 chr3L_5485001 RAL-843 1733 chr3L 5498345 5498419 chr3L 5498477 5498546 12 135 0.0 7.5 3.8 2.5 201 chr3L 5498345 exon blanks - chr3L 5498446 exon blanks - chr3L 5498546 exon blanks - chr3L_12_5495001 chr3L_5495001 RAL-843 1734 chr3L 5537683 5537743 chr3L 5538075 5538135 jockey 28 391 10.5 13.5 12.0 2.2 452 chr3L 5537683 intergenic not near genes chr3L 5537909 intergenic not near genes chr3L 5538135 intergenic CG10625 - chr3L_28_5535001 chr3L_5535001 RAL-843 1735 chr3L 5572145 5572154 chr3L 5572252 5572285 7 124 12.5 20.0 16.2 0.4 140 chr3L 5572145 intron Msr-110 - chr3L 5572215 intron Msr-110 - chr3L 5572285 intron Msr-110 - chr3L_7_5570001 chr3L_5570001 RAL-843 1736 chr3L 5652742 5652794 chr3L 5652842 5652920 24 103 11.5 9.5 10.5 2.1 178 chr3L 5652742 intergenic not near genes chr3L 5652831 intergenic not near genes chr3L 5652920 intergenic not near genes chr3L_24_5650001 chr3L_5650001 RAL-843 1737 chr3L 5666265 5666317 chr3L 5666399 5666451 9 134 0.0 9.0 4.5 1.6 186 chr3L 5666265 intron sif + chr3L 5666358 intron sif + chr3L 5666451 intron sif + chr3L_9_5665001 chr3L_5665001 RAL-843 1738 chr3L 5675165 5675205 chr3L 5675284 5675326 25 132 12.5 11.0 11.8 2.0 161 chr3L 5675165 exon sif + chr3L 5675246 intron sif + chr3L 5675326 intron sif + chr3L_25_5675001 chr3L_5675001 RAL-843 1739 chr3L 5677151 5677204 chr3L 5677266 5677324 14 125 1.0 11.0 6.0 2.0 173 chr3L 5677151 intron sif + chr3L 5677238 intron sif + chr3L 5677324 intron sif + chr3L_14_5675001 chr3L_5675001 RAL-843 1740 chr3L 5909989 5910056 chr3L 5910280 5910347 pogo 26 290 6.5 12.0 9.2 2.5 358 chr3L 5909989 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910347 intron CG13288 + chr3L_26_5910001 chr3L_5910001 RAL-843 1741 chr3L 5926273 5926346 chr3L 5926511 5926588 BS 18 238 8.0 6.5 7.2 2.2 315 chr3L 5926273 intron Vap-33B + chr3L 5926430 intron Vap-33B + chr3L 5926588 intron Vap-33B + chr3L_18_5925001 chr3L_5925001 RAL-843 1742 chr3L 6001638 6001717 chr3L 6004388 6004467 jockey 22 2750 6.0 0.0 3.0 5.5 2829 chr3L 6001638 intron PVRAP + chr3L 6003052 intron PVRAP + chr3L 6004467 intron PVRAP + chr3L_22_6000001 chr3L_6000001 RAL-843 1743 chr3L 6022201 6022257 chr3L 6022335 6022363 17 130 8.0 0.5 4.2 3.3 162 chr3L 6022201 intron PVRAP + chr3L 6022282 intron PVRAP + chr3L 6022363 intron PVRAP + chr3L_17_6020001 chr3L_6020001 RAL-843 1744 chr3L 6040227 6040266 chr3L 6040357 6040394 14 130 8.0 0.0 4.0 2.8 167 chr3L 6040227 intergenic Jon65Aiv + chr3L 6040310 intergenic Jon65Aiv + chr3L 6040394 intergenic Jon65Aiv + chr3L_14_6040001 chr3L_6040001 RAL-843 1745 chr3L 6040290 6040390 chr3L 6042723 6042796 Doc 17 2414 0.0 7.0 3.5 3.8 2506 chr3L 6040290 intergenic Jon65Aiv + chr3L 6041543 intergenic not near genes chr3L 6042796 intergenic not near genes chr3L_17_6040001 chr3L_6040001 RAL-843 1746 chr3L 6052626 6052638 chr3L 6052749 6052757 6 127 20.5 13.0 16.8 0.3 131 chr3L 6052626 exon Jon65Aii + chr3L 6052692 intron Jon65Aii + chr3L 6052757 exon Jon65Aii + chr3L_6_6050001 chr3L_6050001 RAL-843 1747 chr3L 6052643 6052657 chr3L 6052743 6052754 10 114 16.5 11.5 14.0 0.7 111 chr3L 6052643 exon Jon65Aii + chr3L 6052698 intron Jon65Aii + chr3L 6052754 exon Jon65Aii + chr3L_10_6050001 chr3L_6050001 RAL-843 1748 chr3L 6064963 6065042 chr3L 6065090 6065169 27 127 5.0 3.5 4.2 5.2 206 chr3L 6064963 intergenic not near genes chr3L 6065066 intergenic not near genes chr3L 6065169 intergenic not near genes chr3L_27_6065001 chr3L_6065001 RAL-843 1749 chr3L 6119142 6119172 chr3L 6119269 6119299 15 127 5.5 13.0 9.2 1.5 157 chr3L 6119142 exon Ets65A + chr3L 6119220 intron Ets65A + chr3L 6119299 intron Ets65A + chr3L_15_6115001 chr3L_6115001 RAL-843 1750 chr3L 6155672 6155711 chr3L 6155808 6155847 16 136 6.0 0.0 3.0 4.0 175 chr3L 6155672 intergenic CR45421 - chr3L 6155760 intergenic not near genes chr3L 6155847 intergenic not near genes chr3L_16_6155001 chr3L_6155001 RAL-843 1751 chr3L 6159828 6159888 chr3L 6159963 6160028 28 136 13.5 7.5 10.5 2.4 200 chr3L 6159828 intergenic not near genes chr3L 6159928 intergenic not near genes chr3L 6160028 intergenic not near genes chr3L_28_6155001 chr3L_6155001 RAL-843 1752 chr3L 6162346 6162377 chr3L 6162466 6162508 15 125 1.5 10.5 6.0 2.1 162 chr3L 6162346 intergenic CR45744 - chr3L 6162427 intergenic CR45744 - chr3L 6162508 intergenic CR45744 - chr3L_15_6160001 chr3L_6160001 RAL-843 1753 chr3L 6169080 6169134 chr3L 6169211 6169265 23 130 18.0 17.5 17.8 1.2 185 chr3L 6169080 3` UTR CG10289 - chr3L 6169172 3` UTR CG10289 - chr3L 6169265 3` UTR CG10289 - chr3L_23_6165001 chr3L_6165001 RAL-843 1754 chr3L 6185559 6185576 chr3L 6185687 6185704 8 128 26.0 12.0 19.0 0.4 145 chr3L 6185559 exon CG43293 + chr3L 6185632 exon CG43293 + chr3L 6185704 exon CG43293 + chr3L_8_6185001 chr3L_6185001 RAL-843 1755 chr3L 6185579 6185633 chr3L 6185685 6185726 23 124 14.5 12.0 13.2 1.6 147 chr3L 6185579 exon CG43293 + chr3L 6185652 intron CG43293 + chr3L 6185726 exon CG43293 + chr3L_23_6185001 chr3L_6185001 RAL-843 1756 chr3L 6220874 6220941 chr3L 6230076 6230143 roo 39 9201 8.5 12.5 10.5 3.4 9269 chr3L 6220874 5` UTR pncr008:3L + chr3L 6225508 intergenic not near genes chr3L 6230143 intergenic not near genes chr3L_39_6225001 chr3L_6225001 RAL-843 1757 chr3L 6249348 6249392 chr3L 6249494 6249538 15 145 10.0 17.0 13.5 1.0 190 chr3L 6249348 intron Best2 - chr3L 6249443 intron Best2 - chr3L 6249538 intron Best2 - chr3L_15_6245001 chr3L_6245001 RAL-843 1758 chr3L 6334963 6335034 chr3L 6335484 6335555 297 35 518 9.0 6.5 7.8 4.0 592 chr3L 6334963 intron CG13300 - chr3L 6335259 intron CG13300 - chr3L 6335555 intron CG13300 - chr3L_35_6335001 chr3L_6335001 RAL-843 1759 chr3L 6353328 6353408 chr3L 6353458 6353483 29 114 10.0 12.0 11.0 2.4 155 chr3L 6353328 intergenic not near genes chr3L 6353406 intergenic not near genes chr3L 6353483 intergenic not near genes chr3L_29_6350001 chr3L_6350001 RAL-843 1760 chr3L 6369727 6369768 chr3L 6369881 6369922 4 154 6.5 0.0 3.2 1.0 195 chr3L 6369727 intergenic CR45419 - chr3L 6369824 intergenic CR45419 - chr3L 6369922 intergenic CR45419 - chr3L_4_6365001 chr3L_6365001 RAL-843 1761 chr3L 6405619 6405675 chr3L 6432132 6432189 roo 15 26514 11.5 6.0 8.8 1.5 26570 chr3L 6405619 intron CG42747 + chr3L 6418904 intron CG42747 + chr3L 6432189 intron CG42747 + chr3L_15_6415001 chr3L_6415001 RAL-843 1762 chr3L 6441319 6441324 chr3L 6441451 6441456 5 132 6.5 4.0 5.2 0.8 137 chr3L 6441319 intron CG42747 + chr3L 6441388 intron CG42747 + chr3L 6441456 intron CG42747 + chr3L_5_6440001 chr3L_6440001 RAL-843 1763 chr3L 6501630 6501695 chr3L 6501760 6501825 16 129 8.0 5.0 6.5 2.1 195 chr3L 6501630 intron sfl + chr3L 6501728 intron sfl + chr3L 6501825 intron sfl + chr3L_16_6500001 chr3L_6500001 RAL-843 1764 chr3L 6562840 6562860 chr3L 6562953 6562990 12 128 7.0 16.0 11.5 1.0 150 chr3L 6562840 intron CG18769 + chr3L 6562915 intron CG18769 + chr3L 6562990 intron CG18769 + chr3L_12_6560001 chr3L_6560001 RAL-843 1765 chr3L 6573611 6573621 chr3L 6573764 6573774 4 153 23.0 11.0 17.0 0.2 163 chr3L 6573611 intron,intron CG18769 +,jv - chr3L 6573692 intron,intron CG18769 +,jv - chr3L 6573774 intron,intron CG18769 +,jv - chr3L_4_6570001 chr3L_6570001 RAL-843 1766 chr3L 6573631 6573689 chr3L 6573758 6573792 25 139 7.0 9.5 8.2 2.7 161 chr3L 6573631 intron,intron CG18769 +,jv - chr3L 6573712 intron,intron CG18769 +,jv - chr3L 6573792 intron,intron CG18769 +,jv - chr3L_25_6570001 chr3L_6570001 RAL-843 1767 chr3L 6582419 6582491 chr3L 6582564 6582643 20 151 7.0 6.0 6.5 2.7 224 chr3L 6582419 intron,intron CG18769 +,jv - chr3L 6582531 intron,intron CG18769 +,jv - chr3L 6582643 intron,intron CG18769 +,jv - chr3L_20_6580001 chr3L_6580001 RAL-843 1768 chr3L 6620482 6620492 chr3L 6621056 6621066 Rt1c 6 573 16.5 15.0 15.8 0.4 584 chr3L 6620482 intergenic not near genes chr3L 6620774 intergenic not near genes chr3L 6621066 intergenic not near genes chr3L_6_6620001 chr3L_6620001 RAL-843 1769 chr3L 6620493 6620536 chr3L 6621052 6621100 Rt1c 19 568 7.5 13.5 10.5 1.7 607 chr3L 6620493 intergenic not near genes chr3L 6620796 intergenic not near genes chr3L 6621100 intergenic not near genes chr3L_19_6620001 chr3L_6620001 RAL-843 1770 chr3L 6641658 6641717 chr3L 6642046 6642105 8 388 0.5 0.0 0.2 6.7 447 chr3L 6641658 intergenic CR45238 + chr3L 6641882 intergenic CR45239 +,CR45238 + chr3L 6642105 intergenic CR45239 + chr3L_8_6640001 chr3L_6640001 RAL-843 1771 chr3L 6652034 6652069 chr3L 6652162 6652197 19 128 11.0 12.0 11.5 1.5 163 chr3L 6652034 intergenic not near genes chr3L 6652116 intergenic not near genes chr3L 6652197 intergenic not near genes chr3L_19_6650001 chr3L_6650001 RAL-843 1772 chr3L 6652070 6652108 chr3L 6652158 6652199 20 123 8.0 12.5 10.2 1.8 129 chr3L 6652070 intergenic not near genes chr3L 6652134 intergenic not near genes chr3L 6652199 intergenic not near genes chr3L_20_6650001 chr3L_6650001 RAL-843 1773 chr3L 6704542 6704587 chr3L 6704640 6704643 4 82 11.5 6.5 9.0 0.4 101 chr3L 6704542 intergenic CG8519 + chr3L 6704592 intergenic CG8519 + chr3L 6704643 intergenic CG8519 + chr3L_4_6700001 chr3L_6700001 RAL-843 1774 chr3L 6708958 6708964 chr3L 6709088 6709094 5 130 14.0 4.5 9.2 0.5 136 chr3L 6708958 3` UTR CG8519 + chr3L 6709026 intergenic CG8519 + chr3L 6709094 intergenic CG8519 + chr3L_5_6705001 chr3L_6705001 RAL-843 1775 chr3L 6781090 6781127 chr3L 6783164 6783201 Doc 9 2074 9.0 4.5 6.8 1.2 2111 chr3L 6781090 intergenic not near genes chr3L 6782146 intergenic not near genes chr3L 6783201 intergenic not near genes chr3L_9_6780001 chr3L_6780001 RAL-843 1776 chr3L 6806457 6806529 chr3L 6806594 6806666 26 136 8.5 5.0 6.8 3.3 209 chr3L 6806457 intergenic not near genes chr3L 6806562 intergenic not near genes chr3L 6806666 intergenic not near genes chr3L_26_6805001 chr3L_6805001 RAL-843 1777 chr3L 6820606 6820630 chr3L 6820739 6820763 15 133 2.0 8.5 5.2 2.4 157 chr3L 6820606 intergenic not near genes chr3L 6820684 intergenic not near genes chr3L 6820763 intergenic not near genes chr3L_15_6820001 chr3L_6820001 RAL-843 1778 chr3L 6834490 6834497 chr3L 6834718 6834766 5 253 12.0 6.5 9.2 0.5 276 chr3L 6834490 intergenic not near genes chr3L 6834628 intergenic not near genes chr3L 6834766 intergenic not near genes chr3L_5_6830001 chr3L_6830001 RAL-843 1779 chr3L 6834509 6834522 chr3L 6834713 6834742 7 220 7.0 6.0 6.5 0.9 233 chr3L 6834509 intergenic not near genes chr3L 6834626 intergenic not near genes chr3L 6834742 intergenic not near genes chr3L_7_6830001 chr3L_6830001 RAL-843 1780 chr3L 6855881 6855947 chr3L 6860715 6860781 Doc 20 4828 2.5 12.5 7.5 2.4 4900 chr3L 6855881 intergenic not near genes chr3L 6858331 intergenic not near genes chr3L 6860781 intergenic not near genes chr3L_20_6855001 chr3L_6855001 RAL-843 1781 chr3L 6868670 6868740 chr3L 6868798 6868868 28 128 0.0 6.5 3.2 6.7 198 chr3L 6868670 intergenic not near genes chr3L 6868769 intergenic not near genes chr3L 6868868 intergenic not near genes chr3L_28_6865001 chr3L_6865001 RAL-843 1782 chr3L 6887483 6887538 chr3L 6895025 6895080 roo 21 7541 9.5 8.5 9.0 2.1 7597 chr3L 6887483 intergenic not near genes chr3L 6891282 intergenic not near genes chr3L 6895080 intergenic not near genes chr3L_21_6890001 chr3L_6890001 RAL-843 1783 chr3L 6919728 6919782 chr3L 6919858 6919912 16 127 9.5 6.5 8.0 1.8 184 chr3L 6919728 intergenic not near genes chr3L 6919820 intergenic not near genes chr3L 6919912 intergenic not near genes chr3L_16_6915001 chr3L_6915001 RAL-843 1784 chr3L 6922462 6922520 chr3L 6922595 6922653 16 133 6.0 8.0 7.0 2.0 191 chr3L 6922462 intergenic not near genes chr3L 6922558 intergenic not near genes chr3L 6922653 intergenic not near genes chr3L_16_6920001 chr3L_6920001 RAL-843 1785 chr3L 6974440 6974513 chr3L 6974591 6974664 22 151 5.5 10.5 8.0 2.4 224 chr3L 6974440 exon Galphai - chr3L 6974552 intron Galphai - chr3L 6974664 intron Galphai - chr3L_22_6970001 chr3L_6970001 RAL-843 1786 chr3L 6981900 6981934 chr3L 6982104 6982137 15 204 1.0 5.0 3.0 3.8 237 chr3L 6981900 intergenic not near genes chr3L 6982018 intergenic not near genes chr3L 6982137 intergenic not near genes chr3L_15_6980001 chr3L_6980001 RAL-843 1787 chr3L 7000325 7000340 chr3L 7000522 7000537 5 197 12.5 0.5 6.5 0.7 212 chr3L 7000325 intron Mp + chr3L 7000431 intron Mp + chr3L 7000537 intron Mp + chr3L_5_7000001 chr3L_7000001 RAL-843 1788 chr3L 7033124 7033202 chr3L 7033254 7033306 20 125 6.0 10.0 8.0 2.2 182 chr3L 7033124 intron Mp + chr3L 7033215 intron Mp + chr3L 7033306 intron Mp + chr3L_20_7030001 chr3L_7030001 RAL-843 1789 chr3L 7086792 7086853 chr3L 7086921 7086983 6 129 2.5 0.0 1.2 2.7 191 chr3L 7086792 intergenic Cpr65Ea - chr3L 7086888 intergenic Cpr65Ea - chr3L 7086983 intergenic Cpr65Ea - chr3L_6_7085001 chr3L_7085001 RAL-843 1790 chr3L 7103999 7104072 chr3L 7104151 7104226 30 154 7.0 1.0 4.0 6.0 227 chr3L 7103999 intron form3 + chr3L 7104112 intron form3 + chr3L 7104226 intron form3 + chr3L_30_7100001 chr3L_7100001 RAL-843 1791 chr3L 7112537 7112610 chr3L 7112673 7112715 26 135 12.5 9.5 11.0 2.2 178 chr3L 7112537 intron form3 + chr3L 7112626 intron form3 + chr3L 7112715 intron form3 + chr3L_26_7110001 chr3L_7110001 RAL-843 1792 chr3L 7129914 7129977 chr3L 7130156 7130219 BS 19 242 4.5 4.5 4.5 3.5 305 chr3L 7129914 intergenic CG15829 + chr3L 7130066 intergenic CG15829 + chr3L 7130219 intergenic not near genes chr3L_19_7130001 chr3L_7130001 RAL-843 1793 chr3L 7150017 7150042 chr3L 7150146 7150171 12 129 2.5 19.5 11.0 1.0 154 chr3L 7150017 intron corn - chr3L 7150094 intron corn - chr3L 7150171 intron corn - chr3L_12_7150001 chr3L_7150001 RAL-843 1794 chr3L 7244918 7244927 chr3L 7245045 7245064 6 132 14.0 13.5 13.8 0.4 146 chr3L 7244918 exon mei-P22 + chr3L 7244991 exon mei-P22 + chr3L 7245064 exon mei-P22 + chr3L_6_7240001 chr3L_7240001 RAL-843 1795 chr3L 7244928 7244928 chr3L 7245037 7245060 4 117 14.0 12.5 13.2 0.3 132 chr3L 7244928 exon mei-P22 + chr3L 7244994 exon mei-P22 + chr3L 7245060 exon mei-P22 + chr3L_4_7240001 chr3L_7240001 RAL-843 1796 chr3L 7244929 7244961 chr3L 7245035 7245103 16 132 5.0 12.0 8.5 1.7 174 chr3L 7244929 exon mei-P22 + chr3L 7245016 exon mei-P22 + chr3L 7245103 exon mei-P22 + chr3L_16_7245001 chr3L_7245001 RAL-843 1797 chr3L 7264821 7264896 chr3L 7264967 7265029 8 136 0.0 0.5 0.2 6.7 208 chr3L 7264821 intergenic not near genes chr3L 7264925 intergenic not near genes chr3L 7265029 intergenic not near genes chr3L_8_7260001 chr3L_7260001 RAL-843 1798 chr3L 7277072 7277129 chr3L 7277214 7277281 21 151 12.0 7.0 9.5 2.0 209 chr3L 7277072 exon unc-13-4A - chr3L 7277176 intron unc-13-4A - chr3L 7277281 intron unc-13-4A - chr3L_21_7275001 chr3L_7275001 RAL-843 1799 chr3L 7285402 7285451 chr3L 7285530 7285579 15 127 2.5 1.0 1.8 5.4 177 chr3L 7285402 intron unc-13-4A - chr3L 7285490 intron unc-13-4A - chr3L 7285579 intron unc-13-4A - chr3L_15_7285001 chr3L_7285001 RAL-843 1800 chr3L 7308146 7308216 chr3L 7308272 7308342 34 126 6.5 2.0 4.2 6.5 196 chr3L 7308146 intron unc-13-4A - chr3L 7308244 intron unc-13-4A - chr3L 7308342 intron unc-13-4A - chr3L_34_7305001 chr3L_7305001 RAL-843 1801 chr3L 7377268 7377342 chr3L 7380423 7380497 297 32 3155 9.0 7.5 8.2 3.5 3229 chr3L 7377268 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380497 intron SMSr - chr3L_32_7375001 chr3L_7375001 RAL-843 1802 chr3L 7422844 7422893 chr3L 7422980 7423029 4 136 13.0 0.0 6.5 0.5 185 chr3L 7422844 intergenic not near genes chr3L 7422936 intergenic not near genes chr3L 7423029 intergenic not near genes chr3L_4_7420001 chr3L_7420001 RAL-843 1803 chr3L 7422906 7422912 chr3L 7423042 7423048 5 136 9.0 0.0 4.5 0.9 142 chr3L 7422906 intergenic not near genes chr3L 7422977 intergenic not near genes chr3L 7423048 intergenic not near genes chr3L_5_7420001 chr3L_7420001 RAL-843 1804 chr3L 7436102 7436119 chr3L 7436229 7436239 6 125 16.5 10.5 13.5 0.4 137 chr3L 7436102 intron CG42458 + chr3L 7436170 intron CG42458 + chr3L 7436239 intron CG42458 + chr3L_6_7435001 chr3L_7435001 RAL-843 1805 chr3L 7498729 7498774 chr3L 7503546 7503602 F-element 20 4827 9.5 9.5 9.5 1.9 4873 chr3L 7498729 5` UTR CG8539 - chr3L 7501166 intergenic not near genes chr3L 7503602 intergenic not near genes chr3L_20_7500001 chr3L_7500001 RAL-843 1806 chr3L 7505367 7505438 chr3L 7505493 7505564 21 126 7.0 7.0 7.0 2.6 197 chr3L 7505367 intergenic CG7548 - chr3L 7505466 intergenic CG7548 - chr3L 7505564 3` UTR CG7548 - chr3L_21_7505001 chr3L_7505001 RAL-843 1807 chr3L 7574796 7574858 chr3L 7574936 7574985 6 138 0.0 0.5 0.2 5.0 189 chr3L 7574796 intergenic not near genes chr3L 7574890 intergenic not near genes chr3L 7574985 intergenic not near genes chr3L_6_7570001 chr3L_7570001 RAL-843 1808 chr3L 7576177 7576244 chr3L 7576309 7576382 27 135 6.0 8.5 7.2 3.3 205 chr3L 7576177 intergenic not near genes chr3L 7576280 intergenic not near genes chr3L 7576382 intergenic not near genes chr3L_27_7575001 chr3L_7575001 RAL-843 1809 chr3L 7576860 7576877 chr3L 7576992 7576999 4 124 8.5 9.5 9.0 0.4 139 chr3L 7576860 intergenic not near genes chr3L 7576930 intergenic not near genes chr3L 7576999 intergenic not near genes chr3L_4_7575001 chr3L_7575001 RAL-843 1810 chr3L 7617646 7617697 chr3L 7617805 7617851 7 158 9.0 0.0 4.5 1.3 205 chr3L 7617646 intron CG33275 + chr3L 7617748 intron CG33275 + chr3L 7617851 intron CG33275 + chr3L_7_7615001 chr3L_7615001 RAL-843 1811 chr3L 7760031 7760060 chr3L 7760157 7760186 10 124 18.0 8.0 13.0 0.7 155 chr3L 7760031 intergenic Hn + chr3L 7760108 intergenic Hn + chr3L 7760186 intergenic Hn + chr3L_10_7760001 chr3L_7760001 RAL-843 1812 chr3L 7793673 7793733 chr3L 7800775 7800835 297 29 7102 10.5 11.5 11.0 2.4 7162 chr3L 7793673 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800835 intron CG32369 - chr3L_29_7795001 chr3L_7795001 RAL-843 1813 chr3L 7843112 7843134 chr3L 7843254 7843276 8 142 6.0 6.5 6.2 1.1 164 chr3L 7843112 intron Pdp1 - chr3L 7843194 intron Pdp1 - chr3L 7843276 intron Pdp1 - chr3L_8_7840001 chr3L_7840001 RAL-843 1814 chr3L 7856382 7856427 chr3L 7856515 7856560 20 133 9.5 10.5 10.0 1.8 178 chr3L 7856382 intron Pdp1 - chr3L 7856471 intron Pdp1 - chr3L 7856560 intron Pdp1 - chr3L_20_7855001 chr3L_7855001 RAL-843 1815 chr3L 7867766 7867797 chr3L 7867894 7867925 7 128 6.0 12.5 9.2 0.7 159 chr3L 7867766 intergenic Pdp1 - chr3L 7867846 intergenic Pdp1 - chr3L 7867925 intergenic not near genes chr3L_7_7865001 chr3L_7865001 RAL-843 1816 chr3L 7886474 7886486 chr3L 7889042 7889054 Stalker4 6 2567 17.0 8.0 12.5 0.4 2580 chr3L 7886474 intron CG32365 + chr3L 7887764 intron CG32365 + chr3L 7889054 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-843 1817 chr3L 7886488 7886537 chr3L 7889033 7889104 Stalker4 12 2561 6.5 6.0 6.2 1.7 2616 chr3L 7886488 intron CG32365 + chr3L 7887796 intron CG32365 + chr3L 7889104 intron CG32365 + chr3L_12_7885001 chr3L_7885001 RAL-843 1818 chr3L 7903017 7903079 chr3L 7903149 7903211 19 132 6.5 0.0 3.2 4.5 194 chr3L 7903017 intron pbl - chr3L 7903114 intron pbl - chr3L 7903211 intron pbl - chr3L_19_7900001 chr3L_7900001 RAL-843 1819 chr3L 7916786 7916842 chr3L 7926007 7926063 roo 12 9221 13.5 9.0 11.2 1.0 9277 chr3L 7916786 3` UTR syd - chr3L 7921424 intron syd - chr3L 7926063 3` UTR syd - chr3L_12_7920001 chr3L_7920001 RAL-843 1820 chr3L 7956447 7956475 chr3L 7956575 7956603 9 128 4.0 9.5 6.8 1.2 156 chr3L 7956447 intergenic not near genes chr3L 7956525 intergenic not near genes chr3L 7956603 intergenic not near genes chr3L_9_7955001 chr3L_7955001 RAL-843 1821 chr3L 7985322 7985380 chr3L 7987700 7987758 NOF 19 2375 13.5 10.0 11.8 1.5 2436 chr3L 7985322 intron nmo + chr3L 7986540 intron nmo + chr3L 7987758 intron nmo + chr3L_19_7985001 chr3L_7985001 RAL-843 1822 chr3L 7995915 7995978 chr3L 7996073 7996129 44 152 15.0 0.5 7.8 5.0 214 chr3L 7995915 intron nmo + chr3L 7996022 intron nmo + chr3L 7996129 intron nmo + chr3L_44_7995001 chr3L_7995001 RAL-843 1823 chr3L 7993043 7993066 chr3L 7999469 7999497 7 6430 39.5 50.0 44.8 0.2 6454 chr3L 7993043 intron nmo + chr3L 7996270 intron nmo + chr3L 7999497 intron nmo + chr3L_7_7995001 chr3L_7995001 RAL-843 1824 chr3L 7993037 7993114 chr3L 7999510 7999547 9 6440 55.5 40.5 48.0 0.2 6510 chr3L 7993037 intron nmo + chr3L 7996292 intron nmo + chr3L 7999547 intron nmo + chr3L_9_7995001 chr3L_7995001 RAL-843 1825 chr3L 8019659 8019723 chr3L 8024122 8024186 NOF 18 4454 12.0 7.5 9.8 1.7 4527 chr3L 8019659 intron nmo + chr3L 8021922 intron nmo + chr3L 8024186 intron nmo + chr3L_18_8020001 chr3L_8020001 RAL-843 1826 chr3L 8051265 8051332 chr3L 8051392 8051459 13 127 5.0 9.0 7.0 1.6 194 chr3L 8051265 3` UTR nmo + chr3L 8051362 3` UTR nmo + chr3L 8051459 3` UTR nmo + chr3L_13_8050001 chr3L_8050001 RAL-843 1827 chr3L 8068640 8068709 chr3L 8069203 8069272 15 563 8.5 7.0 7.8 1.7 632 chr3L 8068640 intron,exon Ect4 +,CG42590 - chr3L 8068956 intron,exon Ect4 +,CG42590 - chr3L 8069272 intron Ect4 + chr3L_15_8065001 chr3L_8065001 RAL-843 1828 chr3L 8081229 8081300 chr3L 8081382 8081453 21 153 5.0 5.0 5.0 3.5 224 chr3L 8081229 intron Ect4 + chr3L 8081341 intron Ect4 + chr3L 8081453 intron Ect4 + chr3L_21_8080001 chr3L_8080001 RAL-843 1829 chr3L 8102721 8102775 chr3L 8102849 8102903 25 128 9.0 13.0 11.0 2.1 182 chr3L 8102721 intron Ect4 + chr3L 8102812 intron Ect4 + chr3L 8102903 exon Ect4 + chr3L_25_8100001 chr3L_8100001 RAL-843 1830 chr3L 8226671 8226749 chr3L 8226820 8226891 7 146 1.5 0.0 0.8 3.9 220 chr3L 8226671 intergenic not near genes chr3L 8226781 intergenic not near genes chr3L 8226891 intergenic not near genes chr3L_7_8225001 chr3L_8225001 RAL-843 1831 chr3L 8228033 8228041 chr3L 8228414 8228421 4 381 26.0 5.5 15.8 0.2 388 chr3L 8228033 intergenic not near genes chr3L 8228227 intergenic not near genes chr3L 8228421 intergenic not near genes chr3L_4_8225001 chr3L_8225001 RAL-843 1832 chr3L 8228050 8228107 chr3L 8228426 8228474 24 379 13.0 9.0 11.0 2.0 424 chr3L 8228050 intergenic not near genes chr3L 8228262 intergenic not near genes chr3L 8228474 intergenic not near genes chr3L_24_8225001 chr3L_8225001 RAL-843 1833 chr3L 8233542 8233582 chr3L 8238854 8238894 Rt1a 12 5310 9.0 16.5 12.8 0.9 5352 chr3L 8233542 intron CG7213 - chr3L 8236218 intron CG7213 - chr3L 8238894 intron,intron CG7213 -,Dscam4 + chr3L_12_8235001 chr3L_8235001 RAL-843 1834 chr3L 8295751 8295811 chr3L 8295959 8296019 30 208 11.0 16.5 13.8 2.0 268 chr3L 8295751 intergenic CG7201 - chr3L 8295885 intergenic not near genes chr3L 8296019 intergenic not near genes chr3L_30_8295001 chr3L_8295001 RAL-843 1835 chr3L 8371718 8371754 chr3L 8371848 8371890 6 131 0.0 10.5 5.2 1.0 172 chr3L 8371718 intergenic not near genes chr3L 8371804 intergenic not near genes chr3L 8371890 intergenic not near genes chr3L_6_8370001 chr3L_8370001 RAL-843 1836 chr3L 8413803 8413852 chr3L 8413922 8413981 13 128 10.5 1.5 6.0 1.9 178 chr3L 8413803 intron,3` UTR Exo70 +,mtrm + chr3L 8413892 intron,3` UTR Exo70 +,mtrm + chr3L 8413981 intron,3` UTR Exo70 +,mtrm + chr3L_13_8410001 chr3L_8410001 RAL-843 1837 chr3L 8443521 8443583 chr3L 8443652 8443714 32 130 5.5 7.5 6.5 4.3 193 chr3L 8443521 3` UTR CG6983 - chr3L 8443618 3` UTR CG6983 - chr3L 8443714 3` UTR CG6983 - chr3L_32_8440001 chr3L_8440001 RAL-843 1838 chr3L 8451338 8451410 chr3L 8451466 8451538 29 128 8.0 8.0 8.0 3.2 200 chr3L 8451338 intron Gug + chr3L 8451438 intron Gug + chr3L 8451538 intron Gug + chr3L_29_8450001 chr3L_8450001 RAL-843 1839 chr3L 8456431 8456445 chr3L 8456572 8456586 5 141 24.0 25.0 24.5 0.2 155 chr3L 8456431 intron Gug + chr3L 8456508 intron Gug + chr3L 8456586 intron Gug + chr3L_5_8455001 chr3L_8455001 RAL-843 1840 chr3L 8456455 8456484 chr3L 8456569 8456627 18 135 13.0 24.5 18.8 0.9 172 chr3L 8456455 intron Gug + chr3L 8456541 intron Gug + chr3L 8456627 intron Gug + chr3L_18_8455001 chr3L_8455001 RAL-843 1841 chr3L 8481759 8481788 chr3L 8490958 8490982 roo 12 9201 10.5 14.0 12.2 0.9 9223 chr3L 8481759 intron CG43163 - chr3L 8486370 intron CG43163 - chr3L 8490982 intron CG43163 - chr3L_12_8485001 chr3L_8485001 RAL-843 1842 chr3L 8481793 8481806 chr3L 8490955 8491015 roo 14 9191 5.0 13.5 9.2 1.4 9222 chr3L 8481793 intron CG43163 - chr3L 8486404 intron CG43163 - chr3L 8491015 intron CG43163 - chr3L_14_8485001 chr3L_8485001 RAL-843 1843 chr3L 8491598 8491675 chr3L 8491730 8491807 18 132 7.5 9.5 8.5 1.9 209 chr3L 8491598 intron CG43163 - chr3L 8491702 intron CG43163 - chr3L 8491807 intron CG43163 - chr3L_18_8490001 chr3L_8490001 RAL-843 1844 chr3L 8498248 8498319 chr3L 8505762 8505836 blood 10 7516 1.5 7.0 4.2 1.9 7588 chr3L 8498248 intron CG43163 - chr3L 8502042 intron CG43163 - chr3L 8505836 intron CG43163 - chr3L_10_8500001 chr3L_8500001 RAL-843 1845 chr3L 8579818 8579880 chr3L 8579931 8579960 26 114 7.5 6.5 7.0 3.2 142 chr3L 8579818 intron CG43078 + chr3L 8579889 intron CG43078 + chr3L 8579960 intron CG43078 + chr3L_26_8575001 chr3L_8575001 RAL-843 1846 chr3L 8643588 8643667 chr3L 8643722 8643802 12 134 0.0 6.0 3.0 3.0 214 chr3L 8643588 intergenic Cpr66D + chr3L 8643695 intergenic Cpr66D + chr3L 8643802 intergenic Cpr66D + chr3L_12_8640001 chr3L_8640001 RAL-843 1847 chr3L 8751660 8751704 chr3L 8751790 8751819 20 124 7.0 25.0 16.0 1.2 159 chr3L 8751660 3` UTR CR44527 - chr3L 8751740 intergenic CR44527 - chr3L 8751819 intergenic CR44527 - chr3L_20_8750001 chr3L_8750001 RAL-843 1848 chr3L 8791230 8791305 chr3L 8796700 8796774 I-element 15 5469 8.0 0.0 4.0 3.0 5544 chr3L 8791230 exon Fhos + chr3L 8794002 intron Fhos + chr3L 8796774 intron Fhos + chr3L_15_8790001 chr3L_8790001 RAL-843 1849 chr3L 8824523 8824577 chr3L 8824661 8824709 24 135 12.5 8.0 10.2 2.1 186 chr3L 8824523 intergenic not near genes chr3L 8824616 intergenic not near genes chr3L 8824709 intergenic not near genes chr3L_24_8820001 chr3L_8820001 RAL-843 1850 chr3L 8826992 8827017 chr3L 8827156 8827181 11 163 7.0 7.0 7.0 1.4 189 chr3L 8826992 intergenic not near genes chr3L 8827086 intergenic dally + chr3L 8827181 intergenic dally + chr3L_11_8825001 chr3L_8825001 RAL-843 1851 chr3L 8839677 8839749 chr3L 8839807 8839879 12 130 7.5 7.5 7.5 1.4 202 chr3L 8839677 intron dally + chr3L 8839778 intron dally + chr3L 8839879 intron dally + chr3L_12_8835001 chr3L_8835001 RAL-843 1852 chr3L 8884352 8884410 chr3L 8884601 8884624 20 238 7.5 2.0 4.8 3.4 272 chr3L 8884352 intron dally + chr3L 8884488 intron dally + chr3L 8884624 intron dally + chr3L_20_8880001 chr3L_8880001 RAL-843 1853 chr3L 8928219 8928296 chr3L 8928345 8928422 24 126 6.5 8.0 7.2 2.9 203 chr3L 8928219 intron Tsp66E + chr3L 8928320 intron Tsp66E + chr3L 8928422 intron Tsp66E + chr3L_24_8925001 chr3L_8925001 RAL-843 1854 chr3L 8959348 8959391 chr3L 8959558 8959574 13 207 6.5 2.5 4.5 2.4 226 chr3L 8959348 intron CG13313 + chr3L 8959461 intron CG13313 + chr3L 8959574 intron CG13313 + chr3L_13_8955001 chr3L_8955001 RAL-843 1855 chr3L 9003898 9003970 chr3L 9004033 9004105 21 131 5.5 6.0 5.8 3.1 207 chr3L 9003898 intergenic not near genes chr3L 9004002 intergenic not near genes chr3L 9004105 intergenic not near genes chr3L_21_9000001 chr3L_9000001 RAL-843 1856 chr3L 9009918 9009976 chr3L 9010072 9010130 18 154 4.0 6.5 5.2 2.9 212 chr3L 9009918 intergenic CG5194 - chr3L 9010024 intergenic CG5194 - chr3L 9010130 intergenic CG5194 - chr3L_18_9010001 chr3L_9010001 RAL-843 1857 chr3L 9011092 9011157 chr3L 9011229 9011298 23 137 5.5 5.5 5.5 3.5 206 chr3L 9011092 intergenic not near genes chr3L 9011195 intergenic not near genes chr3L 9011298 intergenic not near genes chr3L_23_9010001 chr3L_9010001 RAL-843 1858 chr3L 9024454 9024534 chr3L 9024584 9024664 31 130 4.5 7.0 5.8 4.6 210 chr3L 9024454 intergenic not near genes chr3L 9024559 intergenic not near genes chr3L 9024664 intergenic not near genes chr3L_31_9020001 chr3L_9020001 RAL-843 1859 chr3L 9040184 9040237 chr3L 9040381 9040434 22 197 7.5 7.0 7.2 2.7 250 chr3L 9040184 intergenic not near genes chr3L 9040309 intergenic not near genes chr3L 9040434 intergenic not near genes chr3L_22_9040001 chr3L_9040001 RAL-843 1860 chr3L 9047045 9047108 chr3L 9047182 9047245 10 137 0.5 3.5 2.0 3.3 200 chr3L 9047045 intergenic CG5144 + chr3L 9047145 intergenic CG5144 + chr3L 9047245 intergenic CG5144 + chr3L_10_9045001 chr3L_9045001 RAL-843 1861 chr3L 9076884 9076949 chr3L 9084494 9084559 412 35 7608 15.5 14.0 14.8 2.2 7675 chr3L 9076884 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084559 exon Tequila + chr3L_35_9080001 chr3L_9080001 RAL-843 1862 chr3L 9130510 9130575 chr3L 9134321 9134386 412 24 3805 11.0 8.0 9.5 2.3 3876 chr3L 9130510 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134386 intergenic Dhpr + chr3L_24_9130001 chr3L_9130001 RAL-843 1863 chr3L 9164657 9164689 chr3L 9166167 9166200 hobo 16 1515 15.0 0.0 7.5 1.9 1543 chr3L 9164657 intron Rdl - chr3L 9165428 intron Rdl - chr3L 9166200 intron Rdl - chr3L_16_9165001 chr3L_9165001 RAL-843 1864 chr3L 9219206 9219215 chr3L 9219927 9219937 jockey 4 722 13.5 10.0 11.8 0.3 731 chr3L 9219206 intergenic not near genes chr3L 9219572 intergenic not near genes chr3L 9219937 intergenic not near genes chr3L_4_9215001 chr3L_9215001 RAL-843 1865 chr3L 9219218 9219271 chr3L 9219920 9219976 jockey 15 711 11.0 8.0 9.5 1.4 758 chr3L 9219218 intergenic not near genes chr3L 9219597 intergenic not near genes chr3L 9219976 intergenic not near genes chr3L_15_9215001 chr3L_9215001 RAL-843 1866 chr3L 9237497 9237541 chr3L 9237633 9237677 19 136 10.5 8.5 9.5 1.8 180 chr3L 9237497 intergenic not near genes chr3L 9237587 intergenic not near genes chr3L 9237677 intergenic not near genes chr3L_19_9235001 chr3L_9235001 RAL-843 1867 chr3L 9261418 9261499 chr3L 9261605 9261648 16 181 3.0 9.5 6.2 2.2 230 chr3L 9261418 intron GluRIB + chr3L 9261533 intron GluRIB + chr3L 9261648 intron GluRIB + chr3L_16_9260001 chr3L_9260001 RAL-843 1868 chr3L 9270578 9270651 chr3L 9278382 9278401 roo 30 7783 7.0 7.5 7.2 3.7 7823 chr3L 9270578 intron GluRIB + chr3L 9274490 intron GluRIB + chr3L 9278401 exon GluRIB + chr3L_30_9270001 chr3L_9270001 RAL-843 1869 chr3L 9307796 9307796 chr3L 22908066 22908067 6 13600270 32.0 42.5 37.2 0.2 13600271 chr3L 9307796 intergenic not near genes chr3L 16107932 intron Zn72D - chr3L 22908067 intergenic not near genes chr3L_6_16105001 chr3L_16105001 RAL-843 1870 chr3L 9348416 9348460 chr3L 9348967 9349012 13 551 8.5 0.0 4.2 2.5 596 chr3L 9348416 intergenic PGRP-LC + chr3L 9348714 intergenic PGRP-LC + chr3L 9349012 intergenic not near genes chr3L_13_9345001 chr3L_9345001 RAL-843 1871 chr3L 9382790 9382807 chr3L 9382946 9382957 4 154 10.5 0.0 5.2 0.6 167 chr3L 9382790 intergenic Hsp23 + chr3L 9382874 intergenic Hsp23 + chr3L 9382957 intergenic Hsp23 + chr3L_4_9380001 chr3L_9380001 RAL-843 1872 chr3L 9392425 9392502 chr3L 9395296 9395369 Doc 5 2870 7.5 6.5 7.0 0.6 2944 chr3L 9392425 intron CG4080 - chr3L 9393897 intron CG4080 - chr3L 9395369 intron CG4080 - chr3L_5_9390001 chr3L_9390001 RAL-843 1873 chr3L 9443424 9443439 chr3L 9445306 9445330 S-element 7 1890 10.5 4.5 7.5 0.8 1906 chr3L 9443424 intron CG33926 + chr3L 9444377 intron CG33926 + chr3L 9445330 intron CG33926 + chr3L_7_9440001 chr3L_9440001 RAL-843 1874 chr3L 9492363 9492382 chr3L 9492488 9492513 10 130 18.0 0.0 9.0 1.0 150 chr3L 9492363 intergenic CG32037 - chr3L 9492438 intergenic CG32037 - chr3L 9492513 intergenic CG32037 - chr3L_10_9490001 chr3L_9490001 RAL-843 1875 chr3L 9498166 9498228 chr3L 9498293 9498335 15 126 7.0 9.5 8.2 1.6 169 chr3L 9498166 intron path - chr3L 9498250 intron path - chr3L 9498335 intron path - chr3L_15_9495001 chr3L_9495001 RAL-843 1876 chr3L 9501656 9501726 chr3L 9502191 9502262 roo 26 536 3.0 8.0 5.5 4.0 606 chr3L 9501656 intron path - chr3L 9501959 intron path - chr3L 9502262 intron path - chr3L_26_9500001 chr3L_9500001 RAL-843 1877 chr3L 9523989 9524059 chr3L 9524119 9524189 24 126 14.0 10.0 12.0 1.8 200 chr3L 9523989 intron CG33700 - chr3L 9524089 intron CG33700 - chr3L 9524189 intron CG33700 - chr3L_24_9520001 chr3L_9520001 RAL-843 1878 chr3L 9533722 9533786 chr3L 9541316 9541381 412 21 7588 8.0 13.0 10.5 1.8 7659 chr3L 9533722 intergenic not near genes chr3L 9537552 intergenic not near genes chr3L 9541381 intergenic not near genes chr3L_21_9535001 chr3L_9535001 RAL-843 1879 chr3L 9571870 9571931 chr3L 9572268 9572329 jockey 23 398 9.0 11.0 10.0 2.1 459 chr3L 9571870 intron CG42673 + chr3L 9572100 intron CG42673 + chr3L 9572329 intron CG42673 + chr3L_23_9570001 chr3L_9570001 RAL-843 1880 chr3L 9575872 9575932 chr3L 9580992 9581061 jockey 27 5124 6.0 7.5 6.8 3.5 5189 chr3L 9575872 intron CG42673 + chr3L 9578466 intron CG42673 + chr3L 9581061 intron CG42673 + chr3L_27_9575001 chr3L_9575001 RAL-843 1881 chr3L 9629709 9629764 chr3L 9629835 9629890 15 126 5.0 10.5 7.8 1.7 181 chr3L 9629709 intron CG8336 + chr3L 9629800 intron CG8336 + chr3L 9629890 intron CG8336 + chr3L_15_9625001 chr3L_9625001 RAL-843 1882 chr3L 9715557 9715596 chr3L 9715683 9715722 19 126 11.5 6.5 9.0 1.9 165 chr3L 9715557 intron vsg + chr3L 9715640 intron vsg + chr3L 9715722 intron vsg + chr3L_19_9715001 chr3L_9715001 RAL-843 1883 chr3L 9741573 9741626 chr3L 9741715 9741768 23 142 10.0 14.0 12.0 1.8 195 chr3L 9741573 intron,intron CG42268 -,CR44348 + chr3L 9741670 intron,intron CG42268 -,CR44348 + chr3L 9741768 intron,intron CG42268 -,CR44348 + chr3L_23_9740001 chr3L_9740001 RAL-843 1884 chr3L 9750602 9750639 chr3L 9750729 9750766 25 127 9.0 0.0 4.5 4.5 164 chr3L 9750602 intron CG42268 - chr3L 9750684 intron CG42268 - chr3L 9750766 intron CG42268 - chr3L_25_9750001 chr3L_9750001 RAL-843 1885 chr3L 9761099 9761157 chr3L 9761288 9761350 19 186 7.5 10.5 9.0 1.9 251 chr3L 9761099 5` UTR CR45407 + chr3L 9761224 5` UTR CR45407 + chr3L 9761350 5` UTR CR45407 + chr3L_19_9760001 chr3L_9760001 RAL-843 1886 chr3L 9775311 9775351 chr3L 9775456 9775496 14 145 5.5 5.5 5.5 2.2 185 chr3L 9775311 intron CG8177 + chr3L 9775404 intron CG8177 + chr3L 9775496 intron CG8177 + chr3L_14_9775001 chr3L_9775001 RAL-843 1887 chr3L 9831669 9831722 chr3L 9831800 9831853 13 131 2.0 13.0 7.5 1.5 184 chr3L 9831669 intron CG43897 + chr3L 9831761 intron CG43897 + chr3L 9831853 intron CG43897 + chr3L_13_9830001 chr3L_9830001 RAL-843 1888 chr3L 9834715 9834772 chr3L 9834840 9834914 26 132 10.0 11.0 10.5 2.3 199 chr3L 9834715 3` UTR I-2 - chr3L 9834814 3` UTR I-2 - chr3L 9834914 3` UTR I-2 - chr3L_26_9830001 chr3L_9830001 RAL-843 1889 chr3L 9847985 9848016 chr3L 9848110 9848137 9 123 5.0 16.5 10.8 0.8 152 chr3L 9847985 intron RasGAP1 - chr3L 9848061 intron RasGAP1 - chr3L 9848137 intron RasGAP1 - chr3L_9_9845001 chr3L_9845001 RAL-843 1890 chr3L 9907833 9907883 chr3L 9907960 9907999 20 118 15.5 11.5 13.5 1.4 166 chr3L 9907833 intergenic CG34356 + chr3L 9907916 intergenic CG34356 + chr3L 9907999 intergenic CG34356 + chr3L_20_9905001 chr3L_9905001 RAL-843 1891 chr3L 9907887 9907895 chr3L 9907958 9908022 4 108 14.5 11.5 13.0 0.3 135 chr3L 9907887 intergenic CG34356 + chr3L 9907954 intergenic CG34356 + chr3L 9908022 intergenic CG34356 + chr3L_4_9905001 chr3L_9905001 RAL-843 1892 chr3L 9929638 9929671 chr3L 9938467 9938500 roo 8 8829 12.5 8.0 10.2 0.7 8862 chr3L 9929638 intron CG34356 + chr3L 9934069 intron CG34356 + chr3L 9938500 intron CG34356 + chr3L_8_9930001 chr3L_9930001 RAL-843 1893 chr3L 9947259 9947323 chr3L 9947398 9947462 25 139 6.0 3.5 4.8 4.3 203 chr3L 9947259 intron CG34356 + chr3L 9947360 intron CG34356 + chr3L 9947462 intron CG34356 + chr3L_25_9945001 chr3L_9945001 RAL-843 1894 chr3L 10003100 10003179 chr3L 10003247 10003311 35 146 5.0 6.5 5.8 5.1 211 chr3L 10003100 intron dpr6 + chr3L 10003206 intron dpr6 + chr3L 10003311 intron dpr6 + chr3L_35_10000001 chr3L_10000001 RAL-843 1895 chr3L 10007141 10007206 chr3L 10007293 10007356 20 153 3.0 6.5 4.8 3.4 215 chr3L 10007141 intron dpr6 + chr3L 10007248 intron dpr6 + chr3L 10007356 intron dpr6 + chr3L_20_10005001 chr3L_10005001 RAL-843 1896 chr3L 10032496 10032564 chr3L 10032632 10032701 8 136 0.0 6.5 3.2 1.9 205 chr3L 10032496 intron dpr6 + chr3L 10032598 intron dpr6 + chr3L 10032701 intron dpr6 + chr3L_8_10030001 chr3L_10030001 RAL-843 1897 chr3L 10060094 10060113 chr3L 10067698 10067742 17.6 12 7627 15.0 10.5 12.8 0.9 7648 chr3L 10060094 intron dpr6 + chr3L 10063918 intron dpr6 + chr3L 10067742 intron dpr6 + chr3L_12_10060001 chr3L_10060001 RAL-843 1898 chr3L 10183181 10183240 chr3L 10183740 10183788 16 558 0.0 11.5 5.8 2.4 607 chr3L 10183181 intron dpr10 - chr3L 10183484 intron dpr10 - chr3L 10183788 intron dpr10 - chr3L_16_10180001 chr3L_10180001 RAL-843 1899 chr3L 10191246 10191258 chr3L 10191407 10191419 5 160 17.5 8.0 12.8 0.4 173 chr3L 10191246 exon ect - chr3L 10191332 intron ect - chr3L 10191419 intron ect - chr3L_5_10190001 chr3L_10190001 RAL-843 1900 chr3L 10191259 10191306 chr3L 10191404 10191467 27 160 9.5 8.0 8.8 2.8 208 chr3L 10191259 exon ect - chr3L 10191363 intron ect - chr3L 10191467 intron ect - chr3L_27_10190001 chr3L_10190001 RAL-843 1901 chr3L 10214685 10214829 chr3L 10214821 10214981 18 167 0.0 0.0 0.0 18.0 296 chr3L 10214685 intergenic not near genes chr3L 10214833 intergenic not near genes chr3L 10214981 intergenic not near genes chr3L_18_10210001 chr3L_10210001 RAL-843 1902 chr3L 10219736 10219810 chr3L 10220298 10220372 34 560 9.0 8.5 8.8 3.5 636 chr3L 10219736 exon CG32055 - chr3L 10220054 exon CG32055 - chr3L 10220372 intergenic scramb1 -,CG32055 - chr3L_34_10220001 chr3L_10220001 RAL-843 1903 chr3L 10222697 10222770 chr3L 10222827 10222900 26 130 0.5 7.0 3.8 5.4 203 chr3L 10222697 intron scramb1 - chr3L 10222798 intron scramb1 - chr3L 10222900 intron scramb1 - chr3L_26_10220001 chr3L_10220001 RAL-843 1904 chr3L 10224032 10224038 chr3L 10224139 10224161 4 118 13.5 12.0 12.8 0.3 129 chr3L 10224032 exon scramb1 - chr3L 10224096 exon scramb1 - chr3L 10224161 exon scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-843 1905 chr3L 10246054 10246068 chr3L 10246207 10246221 6 153 0.0 11.5 5.8 0.9 167 chr3L 10246054 intergenic not near genes chr3L 10246138 intergenic not near genes chr3L 10246221 intergenic not near genes chr3L_6_10245001 chr3L_10245001 RAL-843 1906 chr3L 10308702 10308764 chr3L 10308829 10308891 22 126 4.0 9.5 6.8 2.8 189 chr3L 10308702 intergenic not near genes chr3L 10308796 intergenic not near genes chr3L 10308891 intergenic not near genes chr3L_22_10305001 chr3L_10305001 RAL-843 1907 chr3L 10310303 10310378 chr3L 10310450 10310525 25 146 8.0 9.0 8.5 2.6 222 chr3L 10310303 intergenic not near genes chr3L 10310414 intergenic not near genes chr3L 10310525 intergenic not near genes chr3L_25_10310001 chr3L_10310001 RAL-843 1908 chr3L 10314089 10314149 chr3L 10314225 10314285 20 134 4.5 12.5 8.5 2.1 196 chr3L 10314089 intergenic not near genes chr3L 10314187 intergenic not near genes chr3L 10314285 intergenic not near genes chr3L_20_10310001 chr3L_10310001 RAL-843 1909 chr3L 10314433 10314506 chr3L 10314563 10314631 23 129 9.0 3.0 6.0 3.3 198 chr3L 10314433 intergenic not near genes chr3L 10314532 intergenic not near genes chr3L 10314631 intergenic not near genes chr3L_23_10310001 chr3L_10310001 RAL-843 1910 chr3L 10328075 10328127 chr3L 10328237 10328289 30 162 8.5 12.0 10.2 2.7 214 chr3L 10328075 intergenic not near genes chr3L 10328182 intergenic not near genes chr3L 10328289 intergenic not near genes chr3L_30_10325001 chr3L_10325001 RAL-843 1911 chr3L 10348609 10348666 chr3L 10348776 10348791 11 163 11.0 0.0 5.5 1.7 182 chr3L 10348609 intron CR44327 + chr3L 10348700 intron CR44327 + chr3L 10348791 intron CR44327 + chr3L_11_10345001 chr3L_10345001 RAL-843 1912 chr3L 10361010 10361051 chr3L 10361315 10361356 17 302 8.5 6.5 7.5 2.0 346 chr3L 10361010 5` UTR CR44327 + chr3L 10361183 5` UTR CR44327 + chr3L 10361356 5` UTR CR44327 + chr3L_17_10360001 chr3L_10360001 RAL-843 1913 chr3L 10372726 10372781 chr3L 10372862 10372905 20 135 30.0 38.0 34.0 0.6 179 chr3L 10372726 intergenic not near genes chr3L 10372816 intergenic not near genes chr3L 10372905 intergenic not near genes chr3L_20_10370001 chr3L_10370001 RAL-843 1914 chr3L 10372728 10372843 chr3L 10374576 10374646 11 1837 38.0 9.5 23.8 0.4 1918 chr3L 10372728 intergenic not near genes chr3L 10373687 intergenic not near genes chr3L 10374646 intergenic not near genes chr3L_11_10370001 chr3L_10370001 RAL-843 1915 chr3L 10414892 10414969 chr3L 10417312 10417391 Doc 27 2420 1.0 5.5 3.2 6.4 2499 chr3L 10414892 intergenic CG12362 + chr3L 10416142 intergenic not near genes chr3L 10417391 intergenic not near genes chr3L_27_10415001 chr3L_10415001 RAL-843 1916 chr3L 10417531 10417594 chr3L 10417652 10417704 25 114 12.0 13.5 12.8 1.8 173 chr3L 10417531 intergenic not near genes chr3L 10417618 intergenic not near genes chr3L 10417704 intergenic not near genes chr3L_25_10415001 chr3L_10415001 RAL-843 1917 chr3L 10470205 10470277 chr3L 10470342 10470383 29 129 7.5 16.5 12.0 2.2 178 chr3L 10470205 intergenic not near genes chr3L 10470294 intergenic not near genes chr3L 10470383 intergenic not near genes chr3L_29_10470001 chr3L_10470001 RAL-843 1918 chr3L 10480186 10480239 chr3L 10480559 10480622 27 381 7.5 10.0 8.8 2.8 436 chr3L 10480186 intergenic not near genes chr3L 10480404 intergenic not near genes chr3L 10480622 intergenic not near genes chr3L_27_10480001 chr3L_10480001 RAL-843 1919 chr3L 10504296 10504343 chr3L 10504425 10504471 15 126 8.5 6.0 7.2 1.8 175 chr3L 10504296 intron A2bp1 + chr3L 10504384 intron A2bp1 + chr3L 10504471 intron A2bp1 + chr3L_15_10500001 chr3L_10500001 RAL-843 1920 chr3L 10520478 10520510 chr3L 10520616 10520648 16 136 7.5 5.0 6.2 2.2 170 chr3L 10520478 intron A2bp1 + chr3L 10520563 intron A2bp1 + chr3L 10520648 intron A2bp1 + chr3L_16_10520001 chr3L_10520001 RAL-843 1921 chr3L 10535203 10535226 chr3L 10535336 10535359 7 133 14.5 0.0 7.2 0.9 156 chr3L 10535203 intron A2bp1 + chr3L 10535281 intron A2bp1 + chr3L 10535359 intron A2bp1 + chr3L_7_10535001 chr3L_10535001 RAL-843 1922 chr3L 10538660 10538901 chr3L 10538788 10539036 28 131 3.5 3.5 3.5 6.2 376 chr3L 10538660 intron A2bp1 + chr3L 10538848 intron A2bp1 + chr3L 10539036 intron A2bp1 + chr3L_28_10535001 chr3L_10535001 RAL-843 1923 chr3L 10551409 10551488 chr3L 10551547 10551625 19 137 0.5 4.5 2.5 5.4 216 chr3L 10551409 intron A2bp1 + chr3L 10551517 intron A2bp1 + chr3L 10551625 intron A2bp1 + chr3L_19_10550001 chr3L_10550001 RAL-843 1924 chr3L 10598783 10598811 chr3L 10598910 10598926 7 125 11.0 0.0 5.5 1.1 143 chr3L 10598783 intergenic not near genes chr3L 10598854 intergenic not near genes chr3L 10598926 intergenic not near genes chr3L_7_10595001 chr3L_10595001 RAL-843 1925 chr3L 10600408 10600477 chr3L 10600540 10600609 21 131 5.0 5.5 5.2 3.4 201 chr3L 10600408 intergenic not near genes chr3L 10600508 intergenic not near genes chr3L 10600609 intergenic not near genes chr3L_21_10600001 chr3L_10600001 RAL-843 1926 chr3L 10618516 10618570 chr3L 10618779 10618817 31 260 5.5 7.5 6.5 4.1 301 chr3L 10618516 intergenic not near genes chr3L 10618666 intergenic not near genes chr3L 10618817 intergenic not near genes chr3L_31_10615001 chr3L_10615001 RAL-843 1927 chr3L 10620191 10620229 chr3L 10620317 10620355 4 126 7.5 3.0 5.2 0.6 164 chr3L 10620191 intergenic not near genes chr3L 10620273 intergenic not near genes chr3L 10620355 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-843 1928 chr3L 10621803 10621877 chr3L 10621940 10622014 14 137 3.0 6.0 4.5 2.5 211 chr3L 10621803 intergenic not near genes chr3L 10621908 intergenic not near genes chr3L 10622014 intergenic not near genes chr3L_14_10620001 chr3L_10620001 RAL-843 1929 chr3L 10627617 10627677 chr3L 10627771 10627784 6 146 0.0 8.5 4.2 1.2 167 chr3L 10627617 intergenic CG14151 -,CG34238 + chr3L 10627700 3` UTR CG14151 - chr3L 10627784 exon CG14151 - chr3L_6_10625001 chr3L_10625001 RAL-843 1930 chr3L 10665674 10665747 chr3L 10665819 10665893 35 146 5.5 10.5 8.0 3.9 219 chr3L 10665674 intron simj + chr3L 10665784 intron simj + chr3L 10665893 intron simj + chr3L_35_10665001 chr3L_10665001 RAL-843 1931 chr3L 10694869 10694933 chr3L 10695011 10695055 25 141 0.0 8.0 4.0 5.0 186 chr3L 10694869 intron NijA - chr3L 10694962 intron NijA - chr3L 10695055 exon NijA - chr3L_25_10690001 chr3L_10690001 RAL-843 1932 chr3L 10706548 10706561 chr3L 10706730 10706743 6 182 0.0 5.5 2.8 1.6 195 chr3L 10706548 intergenic not near genes chr3L 10706646 intergenic not near genes chr3L 10706743 intergenic not near genes chr3L_6_10705001 chr3L_10705001 RAL-843 1933 chr3L 10735785 10735808 chr3L 10735922 10735945 9 136 5.5 0.0 2.8 2.4 160 chr3L 10735785 intergenic not near genes chr3L 10735865 intergenic not near genes chr3L 10735945 intergenic not near genes chr3L_9_10735001 chr3L_10735001 RAL-843 1934 chr3L 10739760 10739769 chr3L 10739894 10739903 4 134 9.5 0.0 4.8 0.7 143 chr3L 10739760 intergenic not near genes chr3L 10739832 intergenic not near genes chr3L 10739903 intergenic not near genes chr3L_4_10735001 chr3L_10735001 RAL-843 1935 chr3L 10762795 10762856 chr3L 10762913 10762957 15 120 7.5 7.0 7.2 1.8 162 chr3L 10762795 intergenic not near genes chr3L 10762876 intergenic not near genes chr3L 10762957 intergenic not near genes chr3L_15_10760001 chr3L_10760001 RAL-843 1936 chr3L 10880221 10880272 chr3L 10880411 10880462 23 188 11.5 5.5 8.5 2.4 241 chr3L 10880221 intergenic Blos4 +,CG6409 - chr3L 10880342 intergenic Blos4 +,CG6409 - chr3L 10880462 intergenic CG6409 -,Blos4 + chr3L_23_10880001 chr3L_10880001 RAL-843 1937 chr3L 10914267 10914290 chr3L 10914398 10914421 12 131 8.5 0.0 4.2 2.3 154 chr3L 10914267 intergenic not near genes chr3L 10914344 intergenic not near genes chr3L 10914421 intergenic not near genes chr3L_12_10910001 chr3L_10910001 RAL-843 1938 chr3L 10942009 10942073 chr3L 10942142 10942206 17 123 6.0 10.0 8.0 1.9 197 chr3L 10942009 intergenic not near genes chr3L 10942108 intergenic not near genes chr3L 10942206 intergenic not near genes chr3L_17_10940001 chr3L_10940001 RAL-843 1939 chr3L 10951250 10951293 chr3L 10951376 10951419 10 126 0.0 6.5 3.2 2.4 169 chr3L 10951250 intergenic not near genes chr3L 10951334 intergenic not near genes chr3L 10951419 intergenic not near genes chr3L_10_10950001 chr3L_10950001 RAL-843 1940 chr3L 10956401 10956466 chr3L 10956569 10956634 15 167 3.5 6.5 5.0 2.5 233 chr3L 10956401 intergenic not near genes chr3L 10956518 intergenic not near genes chr3L 10956634 intergenic not near genes chr3L_15_10955001 chr3L_10955001 RAL-843 1941 chr3L 10956956 10957033 chr3L 10957082 10957159 24 124 8.5 11.0 9.8 2.2 203 chr3L 10956956 intergenic not near genes chr3L 10957058 intergenic not near genes chr3L 10957159 intergenic not near genes chr3L_24_10955001 chr3L_10955001 RAL-843 1942 chr3L 11000061 11000084 chr3L 11000174 11000210 4 124 8.0 20.5 14.2 0.3 149 chr3L 11000061 intron klu - chr3L 11000136 intron klu - chr3L 11000210 intron klu - chr3L_4_11000001 chr3L_11000001 RAL-843 1943 chr3L 11053613 11053646 chr3L 11053753 11053786 19 140 6.5 13.0 9.8 1.8 173 chr3L 11053613 intergenic CG7888 + chr3L 11053700 intergenic CG7888 + chr3L 11053786 intergenic CG7888 + chr3L_19_11050001 chr3L_11050001 RAL-843 1944 chr3L 11105256 11105318 chr3L 11107017 11107079 X-element 23 1757 6.0 10.5 8.2 2.5 1823 chr3L 11105256 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107079 exon CG32073 - chr3L_23_11105001 chr3L_11105001 RAL-843 1945 chr3L 11127171 11127296 chr3L 11127287 11127433 13 141 0.0 0.0 0.0 13.0 262 chr3L 11127171 intron CG42575 + chr3L 11127302 intron CG42575 + chr3L 11127433 intron CG42575 + chr3L_13_11125001 chr3L_11125001 RAL-843 1946 chr3L 11127880 11127925 chr3L 11128033 11128078 13 148 10.5 6.5 8.5 1.4 198 chr3L 11127880 intron CG42575 + chr3L 11127979 intron CG42575 + chr3L 11128078 intron CG42575 + chr3L_13_11125001 chr3L_11125001 RAL-843 1947 chr3L 11127928 11127950 chr3L 11128030 11128104 6 145 6.5 6.5 6.5 0.8 176 chr3L 11127928 intron CG42575 + chr3L 11128016 intron CG42575 + chr3L 11128104 intron CG42575 + chr3L_6_11125001 chr3L_11125001 RAL-843 1948 chr3L 11135478 11135772 chr3L 11135758 11135907 21 239 0.5 0.0 0.2 17.5 429 chr3L 11135478 3` UTR CG14143 + chr3L 11135692 intergenic CG14143 +,CG32082 + chr3L 11135907 intergenic CG32082 +,CG14143 + chr3L_21_11135001 chr3L_11135001 RAL-843 1949 chr3L 11135778 11135794 chr3L 11135913 11135929 12 135 0.5 17.5 9.0 1.2 151 chr3L 11135778 intergenic CG32082 +,CG14143 + chr3L 11135854 intergenic CG32082 +,CG14143 + chr3L 11135929 intergenic CG32082 +,CG14143 + chr3L_12_11135001 chr3L_11135001 RAL-843 1950 chr3L 11145541 11145551 chr3L 11145651 11145691 5 134 0.0 9.0 4.5 0.9 150 chr3L 11145541 intron CG32082 + chr3L 11145616 intron CG32082 + chr3L 11145691 intron CG32082 + chr3L_5_11145001 chr3L_11145001 RAL-843 1951 chr3L 11146480 11146492 chr3L 11146606 11146617 7 124 7.0 24.5 15.8 0.4 137 chr3L 11146480 intron CG32082 + chr3L 11146548 intron CG32082 + chr3L 11146617 intron CG32082 + chr3L_7_11145001 chr3L_11145001 RAL-843 1952 chr3L 11157776 11157846 chr3L 11157903 11157960 25 125 8.0 4.5 6.2 3.5 184 chr3L 11157776 intron CG32082 + chr3L 11157868 intron CG32082 + chr3L 11157960 intron CG32082 + chr3L_25_11155001 chr3L_11155001 RAL-843 1953 chr3L 11241729 11241790 chr3L 11241861 11241922 19 132 5.0 6.0 5.5 2.9 193 chr3L 11241729 intergenic not near genes chr3L 11241826 intergenic not near genes chr3L 11241922 intergenic not near genes chr3L_19_11240001 chr3L_11240001 RAL-843 1954 chr3L 11263609 11263666 chr3L 11263763 11263767 13 149 14.0 1.5 7.8 1.5 158 chr3L 11263609 intergenic not near genes chr3L 11263688 intergenic not near genes chr3L 11263767 intergenic not near genes chr3L_13_11260001 chr3L_11260001 RAL-843 1955 chr3L 11264426 11264482 chr3L 11271421 11271484 17.6 16 7001 6.5 3.5 5.0 2.7 7058 chr3L 11264426 intergenic not near genes chr3L 11267955 intergenic not near genes chr3L 11271484 intergenic not near genes chr3L_16_11265001 chr3L_11265001 RAL-843 1956 chr3L 11276216 11276260 chr3L 11276349 11276373 15 131 9.0 5.5 7.2 1.8 157 chr3L 11276216 intergenic not near genes chr3L 11276294 intergenic not near genes chr3L 11276373 intergenic not near genes chr3L_15_11275001 chr3L_11275001 RAL-843 1957 chr3L 11276261 11276272 chr3L 11276338 11276405 5 122 8.0 6.0 7.0 0.6 144 chr3L 11276261 intergenic not near genes chr3L 11276333 intergenic not near genes chr3L 11276405 intergenic not near genes chr3L_5_11275001 chr3L_11275001 RAL-843 1958 chr3L 11290576 11290649 chr3L 11290949 11291020 25 373 9.5 6.0 7.8 2.8 444 chr3L 11290576 intron CG6175 - chr3L 11290798 intron CG6175 - chr3L 11291020 intron CG6175 - chr3L_25_11290001 chr3L_11290001 RAL-843 1959 chr3L 11329655 11329716 chr3L 11332909 11332965 jockey 21 3251 11.5 11.0 11.2 1.7 3310 chr3L 11329655 intergenic not near genes chr3L 11331310 intergenic not near genes chr3L 11332965 intergenic not near genes chr3L_21_11330001 chr3L_11330001 RAL-843 1960 chr3L 11396988 11397037 chr3L 11397122 11397139 11 130 8.5 10.0 9.2 1.1 151 chr3L 11396988 intergenic not near genes chr3L 11397064 intergenic CG44362 + chr3L 11397139 intergenic CG44362 + chr3L_11_11395001 chr3L_11395001 RAL-843 1961 chr3L 11416945 11416976 chr3L 11417073 11417110 6 133 0.0 11.0 5.5 0.9 165 chr3L 11416945 intergenic not near genes chr3L 11417028 intergenic not near genes chr3L 11417110 intergenic not near genes chr3L_6_11415001 chr3L_11415001 RAL-843 1962 chr3L 11431141 11431215 chr3L 11431428 11431480 22 282 7.5 4.0 5.8 3.2 339 chr3L 11431141 intergenic not near genes chr3L 11431310 intergenic not near genes chr3L 11431480 intergenic not near genes chr3L_22_11430001 chr3L_11430001 RAL-843 1963 chr3L 11433937 11433970 chr3L 11434072 11434105 12 134 0.0 7.0 3.5 2.7 168 chr3L 11433937 intergenic not near genes chr3L 11434021 intergenic not near genes chr3L 11434105 intergenic not near genes chr3L_12_11430001 chr3L_11430001 RAL-843 1964 chr3L 11435518 11435587 chr3L 11435737 11435806 31 219 10.0 13.5 11.8 2.4 288 chr3L 11435518 intergenic CG6149 -,CR44548 + chr3L 11435662 5` UTR CR44548 + chr3L 11435806 5` UTR CR44548 + chr3L_31_11435001 chr3L_11435001 RAL-843 1965 chr3L 11456859 11456898 chr3L 11457008 11457047 17 149 8.0 7.5 7.8 1.9 188 chr3L 11456859 intergenic CG12289 - chr3L 11456953 intergenic CG12289 - chr3L 11457047 intergenic CG12289 - chr3L_17_11455001 chr3L_11455001 RAL-843 1966 chr3L 11474583 11474645 chr3L 11474722 11474784 15 139 6.5 0.0 3.2 3.6 201 chr3L 11474583 intergenic Vha16-2 + chr3L 11474684 intergenic Vha16-2 + chr3L 11474784 intergenic Vha16-2 + chr3L_15_11470001 chr3L_11470001 RAL-843 1967 chr3L 11553679 11553731 chr3L 11553831 11553883 24 152 11.0 8.0 9.5 2.3 204 chr3L 11553679 intron Mob2 - chr3L 11553781 intron Mob2 - chr3L 11553883 intron Mob2 - chr3L_24_11550001 chr3L_11550001 RAL-843 1968 chr3L 11564730 11564803 chr3L 11572405 11572477 412 6 7669 9.5 9.0 9.2 0.6 7747 chr3L 11564730 5` UTR CG33267 + chr3L 11568604 intron CG33267 + chr3L 11572477 exon CG33267 + chr3L_6_11565001 chr3L_11565001 RAL-843 1969 chr3L 11587873 11587949 chr3L 11587999 11588075 31 126 6.5 9.0 7.8 3.5 202 chr3L 11587873 intergenic rt - chr3L 11587974 intergenic rt - chr3L 11588075 intergenic rt - chr3L_31_11585001 chr3L_11585001 RAL-843 1970 chr3L 11588683 11588758 chr3L 11588889 11588964 29 205 3.5 9.0 6.2 4.0 281 chr3L 11588683 intergenic not near genes chr3L 11588824 intergenic not near genes chr3L 11588964 intergenic not near genes chr3L_29_11585001 chr3L_11585001 RAL-843 1971 chr3L 11590224 11590271 chr3L 11590364 11590411 19 140 1.5 5.5 3.5 4.2 187 chr3L 11590224 intergenic CG7377 + chr3L 11590318 intergenic CG7377 + chr3L 11590411 intergenic CG7377 +,CG33268 - chr3L_19_11590001 chr3L_11590001 RAL-843 1972 chr3L 11653778 11653818 chr3L 11653910 11653950 19 130 13.5 9.0 11.2 1.6 172 chr3L 11653778 intron CG32085 - chr3L 11653864 intron CG32085 - chr3L 11653950 exon CG32085 - chr3L_19_11650001 chr3L_11650001 RAL-843 1973 chr3L 11653820 11653848 chr3L 11653902 11653980 16 119 10.0 7.5 8.8 1.6 160 chr3L 11653820 intron CG32085 - chr3L 11653900 intron CG32085 - chr3L 11653980 exon CG32085 - chr3L_16_11650001 chr3L_11650001 RAL-843 1974 chr3L 11663703 11663754 chr3L 11663878 11663929 9 175 9.0 0.5 4.8 1.6 226 chr3L 11663703 intron CG32085 - chr3L 11663816 intron CG32085 - chr3L 11663929 intron CG32085 - chr3L_9_11660001 chr3L_11660001 RAL-843 1975 chr3L 11678046 11678114 chr3L 11678183 11678251 21 137 7.5 8.5 8.0 2.3 205 chr3L 11678046 intron CG32085 - chr3L 11678148 intron CG32085 - chr3L 11678251 intron CG32085 - chr3L_21_11675001 chr3L_11675001 RAL-843 1976 chr3L 11711698 11711728 chr3L 11711842 11711872 8 144 5.5 5.5 5.5 1.2 174 chr3L 11711698 intergenic crim - chr3L 11711785 intergenic crim -,CG14132 - chr3L 11711872 intergenic CG14132 -,crim - chr3L_8_11710001 chr3L_11710001 RAL-843 1977 chr3L 11723050 11723106 chr3L 11727895 11727951 Doc 21 4845 11.5 13.0 12.2 1.6 4901 chr3L 11723050 3` UTR Bmcp + chr3L 11725500 intron Bmcp + chr3L 11727951 3` UTR Bmcp + chr3L_21_11725001 chr3L_11725001 RAL-843 1978 chr3L 11729628 11729704 chr3L 11729754 11729830 30 125 6.5 7.0 6.8 3.8 202 chr3L 11729628 exon CG32088 + chr3L 11729729 intron CG32088 + chr3L 11729830 exon CG32088 + chr3L_30_11725001 chr3L_11725001 RAL-843 1979 chr3L 11740095 11740154 chr3L 11740243 11740294 18 145 15.0 17.5 16.2 1.0 199 chr3L 11740095 intron CG6024 - chr3L 11740194 intron CG6024 - chr3L 11740294 intron CG6024 - chr3L_18_11740001 chr3L_11740001 RAL-843 1980 chr3L 11743976 11744044 chr3L 11744128 11744202 20 156 8.0 1.0 4.5 3.6 226 chr3L 11743976 exon CG6024 - chr3L 11744089 intron CG6024 - chr3L 11744202 intron CG6024 - chr3L_20_11740001 chr3L_11740001 RAL-843 1981 chr3L 11770944 11771012 chr3L 11771080 11771148 36 135 8.5 5.5 7.0 4.5 204 chr3L 11770944 exon Muc68D - chr3L 11771046 exon Muc68D - chr3L 11771148 exon Muc68D - chr3L_36_11770001 chr3L_11770001 RAL-843 1982 chr3L 11772355 11772357 chr3L 11772493 11772495 4 138 0.0 10.0 5.0 0.7 140 chr3L 11772355 intergenic Muc68D - chr3L 11772425 intergenic Muc68D - chr3L 11772495 intergenic Muc68D - chr3L_4_11770001 chr3L_11770001 RAL-843 1983 chr3L 11810540 11810547 chr3L 11810668 11810675 4 128 4.5 7.5 6.0 0.6 135 chr3L 11810540 intron CG42255 - chr3L 11810608 intron CG42255 - chr3L 11810675 exon CG42255 - chr3L_4_11810001 chr3L_11810001 RAL-843 1984 chr3L 11811412 11811482 chr3L 11811540 11811610 34 127 10.5 10.0 10.2 3.0 198 chr3L 11811412 intron CG42255 - chr3L 11811511 intron CG42255 - chr3L 11811610 exon CG42255 - chr3L_34_11810001 chr3L_11810001 RAL-843 1985 chr3L 11818929 11819135 chr3L 11819058 11819266 20 131 0.0 0.0 0.0 20.0 337 chr3L 11818929 intron CG5946 - chr3L 11819098 intron CG5946 - chr3L 11819266 intron CG5946 - chr3L_20_11815001 chr3L_11815001 RAL-843 1986 chr3L 11846345 11846364 chr3L 11846515 11846534 8 169 12.5 0.0 6.2 1.1 189 chr3L 11846345 intergenic not near genes chr3L 11846440 intergenic not near genes chr3L 11846534 intergenic not near genes chr3L_8_11845001 chr3L_11845001 RAL-843 1987 chr3L 11849293 11849355 chr3L 11849432 11849505 21 149 6.0 5.0 5.5 3.2 212 chr3L 11849293 intergenic not near genes chr3L 11849399 intergenic not near genes chr3L 11849505 intergenic not near genes chr3L_21_11845001 chr3L_11845001 RAL-843 1988 chr3L 11850090 11850130 chr3L 11850235 11850275 18 142 15.5 0.0 7.8 2.0 185 chr3L 11850090 intergenic not near genes chr3L 11850182 intergenic CG44837 - chr3L 11850275 intergenic CG44837 - chr3L_18_11850001 chr3L_11850001 RAL-843 1989 chr3L 11854809 11854885 chr3L 11854960 11855036 18 151 6.0 6.5 6.2 2.5 227 chr3L 11854809 exon CG44837 - chr3L 11854922 intron CG44837 - chr3L 11855036 intron CG44837 - chr3L_18_11850001 chr3L_11850001 RAL-843 1990 chr3L 11864512 11864582 chr3L 11865852 11865909 pogo 30 1342 9.5 11.0 10.2 2.7 1397 chr3L 11864512 intron CG44837 - chr3L 11865210 intron CG44837 - chr3L 11865909 intron CG44837 - chr3L_30_11865001 chr3L_11865001 RAL-843 1991 chr3L 11887208 11887268 chr3L 11887355 11887415 15 146 6.0 0.5 3.2 3.6 207 chr3L 11887208 intron CG44837 - chr3L 11887312 intron,3` UTR CG44837 -,CG5897 - chr3L 11887415 intron,3` UTR CG44837 -,CG5897 - chr3L_15_11885001 chr3L_11885001 RAL-843 1992 chr3L 11893958 11893977 chr3L 11894279 11894290 6 317 1.5 12.5 7.0 0.8 332 chr3L 11893958 intron CG44837 - chr3L 11894124 intron CG44837 - chr3L 11894290 intron CG44837 - chr3L_6_11890001 chr3L_11890001 RAL-843 1993 chr3L 11918649 11918727 chr3L 11918808 11918886 4 159 4.0 5.0 4.5 0.7 237 chr3L 11918649 intron CG44837 - chr3L 11918768 intron CG44837 - chr3L 11918886 intron CG44837 - chr3L_4_11915001 chr3L_11915001 RAL-843 1994 chr3L 11926943 11926977 chr3L 11927079 11927113 10 136 6.5 16.0 11.2 0.8 170 chr3L 11926943 intron CG44837 - chr3L 11927028 intron CG44837 - chr3L 11927113 intron CG44837 - chr3L_10_11925001 chr3L_11925001 RAL-843 1995 chr3L 11938841 11938900 chr3L 11938957 11939034 17 122 7.5 7.0 7.2 2.1 193 chr3L 11938841 5` UTR CG44837 - chr3L 11938938 intergenic CG44837 - chr3L 11939034 intergenic CG44837 - chr3L_17_11935001 chr3L_11935001 RAL-843 1996 chr3L 11943444 11943520 chr3L 11943595 11943671 40 151 5.0 8.5 6.8 5.1 227 chr3L 11943444 3` UTR Rpt4R + chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943671 3` UTR CG5883 - chr3L_40_11940001 chr3L_11940001 RAL-843 1997 chr3L 11961180 11961224 chr3L 11961304 11961348 10 132 9.0 10.0 9.5 1.0 168 chr3L 11961180 exon prc - chr3L 11961264 exon prc - chr3L 11961348 exon prc - chr3L_10_11960001 chr3L_11960001 RAL-843 1998 chr3L 11984531 11984540 chr3L 11984662 11984681 5 139 19.5 3.5 11.5 0.4 150 chr3L 11984531 intergenic CG6938 + chr3L 11984606 intergenic CG6938 + chr3L 11984681 intergenic CG6938 + chr3L_5_11980001 chr3L_11980001 RAL-843 1999 chr3L 11984544 11984599 chr3L 11984660 11984727 18 134 8.0 3.0 5.5 2.8 183 chr3L 11984544 intergenic CG6938 + chr3L 11984636 intergenic CG6938 + chr3L 11984727 intergenic CG6938 + chr3L_18_11980001 chr3L_11980001 RAL-843 2000 chr3L 12013876 12013938 chr3L 12014005 12014079 33 136 7.5 6.0 6.8 4.2 203 chr3L 12013876 intron rols - chr3L 12013978 intron rols - chr3L 12014079 intron rols - chr3L_33_12010001 chr3L_12010001 RAL-843 2001 chr3L 12052663 12052731 chr3L 12052802 12052870 21 138 11.0 9.5 10.2 1.9 207 chr3L 12052663 intron rols - chr3L 12052766 intron rols - chr3L 12052870 intron rols - chr3L_21_12050001 chr3L_12050001 RAL-843 2002 chr3L 12062574 12062589 chr3L 12062679 12062715 8 114 15.0 8.0 11.5 0.6 141 chr3L 12062574 intron rols - chr3L 12062644 intron rols - chr3L 12062715 intron rols - chr3L_8_12060001 chr3L_12060001 RAL-843 2003 chr3L 12062600 12062626 chr3L 12062678 12062722 17 113 6.5 8.5 7.5 2.0 122 chr3L 12062600 intron rols - chr3L 12062661 intron rols - chr3L 12062722 intron rols - chr3L_17_12060001 chr3L_12060001 RAL-843 2004 chr3L 12066329 12066338 chr3L 12066616 12066625 4 287 21.5 7.5 14.5 0.3 296 chr3L 12066329 intergenic not near genes chr3L 12066477 intergenic not near genes chr3L 12066625 intergenic not near genes chr3L_4_12065001 chr3L_12065001 RAL-843 2005 chr3L 12066350 12066398 chr3L 12066605 12066685 19 276 6.0 5.5 5.8 2.8 335 chr3L 12066350 intergenic not near genes chr3L 12066518 intergenic not near genes chr3L 12066685 intergenic not near genes chr3L_19_12065001 chr3L_12065001 RAL-843 2006 chr3L 12075418 12075457 chr3L 12075516 12075590 14 131 6.0 0.0 3.0 3.5 172 chr3L 12075418 intron Sema-5c - chr3L 12075504 intron Sema-5c - chr3L 12075590 intron Sema-5c - chr3L_14_12075001 chr3L_12075001 RAL-843 2007 chr3L 12087680 12087748 chr3L 12088225 12088287 28 540 6.0 0.0 3.0 7.0 607 chr3L 12087680 intergenic not near genes chr3L 12087984 intergenic not near genes chr3L 12088287 intergenic CG17154 + chr3L_28_12085001 chr3L_12085001 RAL-843 2008 chr3L 12089030 12089109 chr3L 12089160 12089239 44 130 8.0 9.5 8.8 4.5 209 chr3L 12089030 exon CG17154 + chr3L 12089134 3` UTR CG17154 + chr3L 12089239 intergenic CG17154 + chr3L_44_12085001 chr3L_12085001 RAL-843 2009 chr3L 12092349 12092421 chr3L 12092476 12092548 21 127 3.0 8.5 5.8 3.1 199 chr3L 12092349 intergenic not near genes chr3L 12092448 intergenic not near genes chr3L 12092548 intergenic not near genes chr3L_21_12090001 chr3L_12090001 RAL-843 2010 chr3L 12106218 12106298 chr3L 12106357 12106437 20 139 6.5 9.0 7.8 2.3 219 chr3L 12106218 intergenic not near genes chr3L 12106328 intergenic not near genes chr3L 12106437 intergenic not near genes chr3L_20_12105001 chr3L_12105001 RAL-843 2011 chr3L 12115692 12115770 chr3L 12115848 12115926 20 156 7.0 8.0 7.5 2.4 234 chr3L 12115692 intergenic l(3)j2D3 + chr3L 12115809 intergenic l(3)j2D3 + chr3L 12115926 intergenic l(3)j2D3 + chr3L_20_12115001 chr3L_12115001 RAL-843 2012 chr3L 12119716 12119784 chr3L 12119863 12119931 23 146 4.0 4.5 4.2 4.4 215 chr3L 12119716 3` UTR ssp + chr3L 12119824 intergenic ssp +,CG11560 + chr3L 12119931 intergenic CG11560 +,ssp + chr3L_23_12115001 chr3L_12115001 RAL-843 2013 chr3L 12249558 12249562 chr3L 12249716 12249720 4 158 22.5 11.0 16.8 0.2 162 chr3L 12249558 intron app - chr3L 12249639 intron app - chr3L 12249720 intron app - chr3L_4_12245001 chr3L_12245001 RAL-843 2014 chr3L 12290202 12290287 chr3L 12290342 12290431 7 142 0.0 0.0 0.0 7.0 229 chr3L 12290202 intergenic CR45658 - chr3L 12290316 intergenic CR45658 - chr3L 12290431 intergenic CR45658 - chr3L_7_12290001 chr3L_12290001 RAL-843 2015 chr3L 12297440 12297473 chr3L 12297650 12297683 6 210 1.5 0.0 0.8 3.3 243 chr3L 12297440 intergenic not near genes chr3L 12297562 intergenic not near genes chr3L 12297683 intergenic not near genes chr3L_6_12295001 chr3L_12295001 RAL-843 2016 chr3L 12300802 12300870 chr3L 12300991 12301059 35 188 8.0 8.0 8.0 3.9 257 chr3L 12300802 intergenic CR44550 + chr3L 12300930 intergenic CR44550 + chr3L 12301059 5` UTR CR44550 + chr3L_35_12300001 chr3L_12300001 RAL-843 2017 chr3L 12304045 12304081 chr3L 12304171 12304207 12 125 12.5 9.0 10.8 1.0 162 chr3L 12304045 intergenic not near genes chr3L 12304126 intergenic not near genes chr3L 12304207 intergenic not near genes chr3L_12_12300001 chr3L_12300001 RAL-843 2018 chr3L 12304083 12304112 chr3L 12304170 12304209 11 113 8.5 10.0 9.2 1.1 126 chr3L 12304083 intergenic not near genes chr3L 12304146 intergenic not near genes chr3L 12304209 intergenic not near genes chr3L_11_12300001 chr3L_12300001 RAL-843 2019 chr3L 12317392 12317417 chr3L 12317543 12317568 11 148 13.5 12.0 12.8 0.8 176 chr3L 12317392 intergenic not near genes chr3L 12317480 intergenic not near genes chr3L 12317568 intergenic not near genes chr3L_11_12315001 chr3L_12315001 RAL-843 2020 chr3L 12317419 12317442 chr3L 12317535 12317593 17 145 9.0 9.0 9.0 1.7 174 chr3L 12317419 intergenic not near genes chr3L 12317506 intergenic not near genes chr3L 12317593 intergenic not near genes chr3L_17_12315001 chr3L_12315001 RAL-843 2021 chr3L 12354691 12354758 chr3L 12354837 12354904 31 146 6.0 8.0 7.0 3.9 213 chr3L 12354691 intergenic not near genes chr3L 12354798 intergenic not near genes chr3L 12354904 intergenic not near genes chr3L_31_12350001 chr3L_12350001 RAL-843 2022 chr3L 12369489 12369558 chr3L 12369629 12369698 27 140 9.5 12.0 10.8 2.3 209 chr3L 12369489 intron Ncc69 - chr3L 12369594 intron Ncc69 - chr3L 12369698 intron Ncc69 - chr3L_27_12365001 chr3L_12365001 RAL-843 2023 chr3L 12458483 12458507 chr3L 12458632 12458656 7 149 4.5 8.5 6.5 0.9 173 chr3L 12458483 intergenic not near genes chr3L 12458570 intergenic not near genes chr3L 12458656 intergenic not near genes chr3L_7_12455001 chr3L_12455001 RAL-843 2024 chr3L 12476238 12476317 chr3L 12476365 12476443 30 127 2.0 5.5 3.8 6.2 205 chr3L 12476238 intron CG10663 - chr3L 12476340 intron CG10663 - chr3L 12476443 intron CG10663 - chr3L_30_12475001 chr3L_12475001 RAL-843 2025 chr3L 12491675 12491711 chr3L 12491808 12491843 6 132 0.0 9.0 4.5 1.1 168 chr3L 12491675 intergenic CG10657 -,CR45682 +,CR45681 + chr3L 12491759 intergenic CG10657 -,CR45682 + chr3L 12491843 3` UTR,5` UTR CG10657 -,CR45682 + chr3L_6_12490001 chr3L_12490001 RAL-843 2026 chr3L 12565372 12565388 chr3L 12565502 12565518 5 130 14.0 8.5 11.2 0.4 146 chr3L 12565372 intron sowah - chr3L 12565445 intron sowah - chr3L 12565518 intron sowah - chr3L_5_12565001 chr3L_12565001 RAL-843 2027 chr3L 12565391 12565441 chr3L 12565496 12565571 35 129 6.0 8.0 7.0 4.4 180 chr3L 12565391 intron sowah - chr3L 12565481 intron sowah - chr3L 12565571 intron sowah - chr3L_35_12565001 chr3L_12565001 RAL-843 2028 chr3L 12591584 12591642 chr3L 12591711 12591729 12 112 10.5 12.5 11.5 1.0 145 chr3L 12591584 intron ara + chr3L 12591656 intron ara + chr3L 12591729 intron ara + chr3L_12_12590001 chr3L_12590001 RAL-843 2029 chr3L 12605679 12605747 chr3L 12605808 12605877 22 130 7.0 6.5 6.8 2.8 198 chr3L 12605679 intergenic not near genes chr3L 12605778 intergenic not near genes chr3L 12605877 intergenic not near genes chr3L_22_12605001 chr3L_12605001 RAL-843 2030 chr3L 12620969 12620981 chr3L 12621080 12621085 5 110 13.0 16.0 14.5 0.3 116 chr3L 12620969 3` UTR caup + chr3L 12621027 3` UTR caup + chr3L 12621085 3` UTR caup + chr3L_5_12620001 chr3L_12620001 RAL-843 2031 chr3L 12626124 12626188 chr3L 12626283 12626347 13 158 2.0 2.5 2.2 4.1 223 chr3L 12626124 intergenic not near genes chr3L 12626236 intergenic not near genes chr3L 12626347 intergenic not near genes chr3L_13_12625001 chr3L_12625001 RAL-843 2032 chr3L 12654336 12654408 chr3L 12654466 12654539 13 126 7.0 1.5 4.2 2.5 203 chr3L 12654336 intergenic not near genes chr3L 12654438 intergenic not near genes chr3L 12654539 intergenic not near genes chr3L_13_12650001 chr3L_12650001 RAL-843 2033 chr3L 12668024 12668092 chr3L 12668160 12668227 11 131 0.0 8.5 4.2 2.1 203 chr3L 12668024 intergenic not near genes chr3L 12668126 intergenic not near genes chr3L 12668227 intergenic not near genes chr3L_11_12665001 chr3L_12665001 RAL-843 2034 chr3L 12706594 12706656 chr3L 12706771 12706832 28 175 10.5 8.5 9.5 2.7 238 chr3L 12706594 intron mirr + chr3L 12706713 intron mirr + chr3L 12706832 intron mirr + chr3L_28_12705001 chr3L_12705001 RAL-843 2035 chr3L 12727986 12728043 chr3L 12728120 12728177 15 134 4.5 11.0 7.8 1.7 191 chr3L 12727986 intergenic not near genes chr3L 12728082 intergenic not near genes chr3L 12728177 intergenic not near genes chr3L_15_12725001 chr3L_12725001 RAL-843 2036 chr3L 12743275 12743308 chr3L 12743401 12743434 14 126 2.0 6.0 4.0 2.8 159 chr3L 12743275 intron CG32112 + chr3L 12743354 intron CG32112 + chr3L 12743434 intron CG32112 + chr3L_14_12740001 chr3L_12740001 RAL-843 2037 chr3L 12857964 12858004 chr3L 12858109 12858149 10 145 0.0 8.5 4.2 1.9 185 chr3L 12857964 3` UTR CG32107 - chr3L 12858056 3` UTR CG32107 - chr3L 12858149 3` UTR CG32107 - chr3L_10_12855001 chr3L_12855001 RAL-843 2038 chr3L 12874877 12874950 chr3L 12877219 12877292 jockey 24 2342 11.5 9.5 10.5 2.1 2415 chr3L 12874877 intergenic not near genes chr3L 12876084 intergenic not near genes chr3L 12877292 intergenic not near genes chr3L_24_12875001 chr3L_12875001 RAL-843 2039 chr3L 12894765 12894807 chr3L 12894893 12894935 14 128 10.5 13.0 11.8 1.1 170 chr3L 12894765 intergenic CG14118 + chr3L 12894850 intergenic CG14118 + chr3L 12894935 intergenic CG14118 + chr3L_14_12890001 chr3L_12890001 RAL-843 2040 chr3L 12906507 12906514 chr3L 12906637 12906642 4 130 18.0 5.0 11.5 0.3 135 chr3L 12906507 intergenic not near genes chr3L 12906574 intergenic not near genes chr3L 12906642 intergenic not near genes chr3L_4_12905001 chr3L_12905001 RAL-843 2041 chr3L 12919236 12919248 chr3L 12924759 12924771 Rt1c 4 5523 19.0 6.5 12.8 0.3 5535 chr3L 12919236 intergenic not near genes chr3L 12922004 intergenic not near genes chr3L 12924771 intergenic not near genes chr3L_4_12920001 chr3L_12920001 RAL-843 2042 chr3L 12919260 12919306 chr3L 12924754 12924833 Rt1c 8 5510 8.0 6.0 7.0 1.0 5573 chr3L 12919260 intergenic not near genes chr3L 12922046 intergenic not near genes chr3L 12924833 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-843 2043 chr3L 12957752 12957782 chr3L 12962284 12962314 copia 12 4530 12.0 11.5 11.8 0.9 4562 chr3L 12957752 intergenic not near genes chr3L 12960033 intergenic not near genes chr3L 12962314 intergenic not near genes chr3L_12_12960001 chr3L_12960001 RAL-843 2044 chr3L 12957783 12957807 chr3L 12962278 12962339 copia 11 4529 9.5 11.0 10.2 1.0 4556 chr3L 12957783 intergenic not near genes chr3L 12960061 intergenic not near genes chr3L 12962339 intergenic not near genes chr3L_11_12960001 chr3L_12960001 RAL-843 2045 chr3L 12966936 12966944 chr3L 12967616 12967624 7 678 20.0 9.5 14.8 0.4 688 chr3L 12966936 exon Or69a - chr3L 12967280 exon Or69a - chr3L 12967624 exon Or69a - chr3L_7_12965001 chr3L_12965001 RAL-843 2046 chr3L 12966946 12966949 chr3L 12967611 12967629 4 674 18.5 8.5 13.5 0.3 683 chr3L 12966946 exon Or69a - chr3L 12967288 exon Or69a - chr3L 12967629 exon Or69a - chr3L_4_12965001 chr3L_12965001 RAL-843 2047 chr3L 12966950 12967002 chr3L 12967610 12967682 27 673 8.0 8.5 8.2 2.9 732 chr3L 12966950 exon Or69a - chr3L 12967316 exon Or69a - chr3L 12967682 exon Or69a - chr3L_27_12965001 chr3L_12965001 RAL-843 2048 chr3L 12970938 12971013 chr3L 12971071 12971146 31 132 5.5 4.5 5.0 5.2 208 chr3L 12970938 intergenic CG10748 - chr3L 12971042 intergenic CG10748 - chr3L 12971146 intergenic CG10748 - chr3L_31_12970001 chr3L_12970001 RAL-843 2049 chr3L 12975691 12975752 chr3L 12975813 12975877 11 130 0.0 3.5 1.8 3.9 186 chr3L 12975691 intergenic not near genes chr3L 12975784 intergenic not near genes chr3L 12975877 intergenic not near genes chr3L_11_12975001 chr3L_12975001 RAL-843 2050 chr3L 12986609 12986611 chr3L 12986745 12986762 4 144 12.5 9.5 11.0 0.3 153 chr3L 12986609 intergenic not near genes chr3L 12986686 intergenic not near genes chr3L 12986762 intergenic not near genes chr3L_4_12985001 chr3L_12985001 RAL-843 2051 chr3L 12986624 12986660 chr3L 12986740 12986811 22 147 5.0 8.0 6.5 2.9 187 chr3L 12986624 intergenic not near genes chr3L 12986718 intergenic not near genes chr3L 12986811 intergenic not near genes chr3L_22_12985001 chr3L_12985001 RAL-843 2052 chr3L 13007644 13007724 chr3L 13007773 13007859 26 124 9.5 6.5 8.0 2.9 215 chr3L 13007644 exon CG11263 + chr3L 13007752 3` UTR CG11263 + chr3L 13007859 3` UTR CG11263 + chr3L_26_13005001 chr3L_13005001 RAL-843 2053 chr3L 13017871 13017916 chr3L 13018003 13018048 10 132 4.5 6.0 5.2 1.6 177 chr3L 13017871 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13017960 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13018048 intergenic mRpL20 -,ste14 +,CR45445 - chr3L_10_13015001 chr3L_13015001 RAL-843 2054 chr3L 13067488 13067573 chr3L 13067614 13067699 12 126 8.0 5.0 6.5 1.6 211 chr3L 13067488 intergenic not near genes chr3L 13067594 intergenic not near genes chr3L 13067699 intergenic not near genes chr3L_12_13065001 chr3L_13065001 RAL-843 2055 chr3L 13071225 13071300 chr3L 13071354 13071429 24 128 6.0 8.0 7.0 3.0 204 chr3L 13071225 intergenic not near genes chr3L 13071327 intergenic not near genes chr3L 13071429 intergenic not near genes chr3L_24_13070001 chr3L_13070001 RAL-843 2056 chr3L 13094186 13094211 chr3L 13094312 13094337 12 126 8.0 5.5 6.8 1.5 151 chr3L 13094186 intergenic not near genes chr3L 13094262 intergenic not near genes chr3L 13094337 intergenic not near genes chr3L_12_13090001 chr3L_13090001 RAL-843 2057 chr3L 13095772 13095792 chr3L 13095910 13095930 4 138 16.5 0.0 8.2 0.4 158 chr3L 13095772 intergenic not near genes chr3L 13095851 intergenic not near genes chr3L 13095930 intergenic not near genes chr3L_4_13095001 chr3L_13095001 RAL-843 2058 chr3L 13137608 13137622 chr3L 13137746 13137760 7 137 16.5 7.0 11.8 0.5 152 chr3L 13137608 intergenic not near genes chr3L 13137684 intergenic not near genes chr3L 13137760 intergenic not near genes chr3L_7_13135001 chr3L_13135001 RAL-843 2059 chr3L 13137627 13137676 chr3L 13137737 13137794 31 126 6.5 5.0 5.8 4.6 167 chr3L 13137627 intergenic not near genes chr3L 13137710 intergenic not near genes chr3L 13137794 intergenic not near genes chr3L_31_13135001 chr3L_13135001 RAL-843 2060 chr3L 13159240 13159274 chr3L 13159370 13159404 8 129 13.0 6.5 9.8 0.7 164 chr3L 13159240 intergenic not near genes chr3L 13159322 intergenic not near genes chr3L 13159404 intergenic not near genes chr3L_8_13155001 chr3L_13155001 RAL-843 2061 chr3L 13182399 13182474 chr3L 13182527 13182602 12 127 7.5 5.5 6.5 1.6 203 chr3L 13182399 intergenic not near genes chr3L 13182500 intergenic not near genes chr3L 13182602 intergenic not near genes chr3L_12_13180001 chr3L_13180001 RAL-843 2062 chr3L 13223165 13223242 chr3L 13223292 13223369 15 125 8.0 13.0 10.5 1.3 204 chr3L 13223165 intergenic not near genes chr3L 13223267 intergenic not near genes chr3L 13223369 intergenic not near genes chr3L_15_13220001 chr3L_13220001 RAL-843 2063 chr3L 13229372 13229414 chr3L 13229518 13229560 19 146 6.5 10.0 8.2 2.1 188 chr3L 13229372 intron caps + chr3L 13229466 intron caps + chr3L 13229560 intron caps + chr3L_19_13225001 chr3L_13225001 RAL-843 2064 chr3L 13267241 13267295 chr3L 13267404 13267433 16 160 7.5 5.0 6.2 2.2 192 chr3L 13267241 intron caps + chr3L 13267337 intron caps + chr3L 13267433 intron caps + chr3L_16_13265001 chr3L_13265001 RAL-843 2065 chr3L 13296469 13296540 chr3L 13296610 13296681 34 141 8.5 5.5 7.0 4.2 212 chr3L 13296469 intergenic Sfp70A4 - chr3L 13296575 3` UTR Sfp70A4 - chr3L 13296681 3` UTR Sfp70A4 - chr3L_34_13295001 chr3L_13295001 RAL-843 2066 chr3L 13315809 13315858 chr3L 13315944 13315995 7 137 7.0 2.0 4.5 1.3 186 chr3L 13315809 intergenic not near genes chr3L 13315902 intergenic not near genes chr3L 13315995 intergenic not near genes chr3L_7_13315001 chr3L_13315001 RAL-843 2067 chr3L 13326130 13326208 chr3L 13326290 13326368 27 158 3.5 11.5 7.5 3.2 238 chr3L 13326130 intergenic not near genes chr3L 13326249 intergenic not near genes chr3L 13326368 intergenic not near genes chr3L_27_13325001 chr3L_13325001 RAL-843 2068 chr3L 13337133 13337158 chr3L 13337274 13337299 13 141 4.5 6.0 5.2 2.1 166 chr3L 13337133 intergenic not near genes chr3L 13337216 intergenic not near genes chr3L 13337299 intergenic not near genes chr3L_13_13335001 chr3L_13335001 RAL-843 2069 chr3L 13372371 13372424 chr3L 13372586 13372658 17 233 8.5 4.5 6.5 2.3 287 chr3L 13372371 intergenic not near genes chr3L 13372514 intergenic not near genes chr3L 13372658 intergenic not near genes chr3L_17_13370001 chr3L_13370001 RAL-843 2070 chr3L 13400479 13400546 chr3L 13400605 13400672 23 126 5.0 7.5 6.2 3.2 193 chr3L 13400479 intron sens - chr3L 13400576 intron sens - chr3L 13400672 intron sens - chr3L_23_13400001 chr3L_13400001 RAL-843 2071 chr3L 13525115 13525125 chr3L 13532961 13532971 roo 5 7846 28.5 9.5 19.0 0.2 7856 chr3L 13525115 intergenic not near genes chr3L 13529043 intergenic not near genes chr3L 13532971 intergenic not near genes chr3L_5_13525001 chr3L_13525001 RAL-843 2072 chr3L 13525130 13525188 chr3L 13532976 13532994 roo 30 7842 13.5 14.0 13.8 2.0 7864 chr3L 13525130 intergenic not near genes chr3L 13529062 intergenic not near genes chr3L 13532994 intergenic not near genes chr3L_30_13525001 chr3L_13525001 RAL-843 2073 chr3L 13574583 13574616 chr3L 13580143 13580177 Rt1c 10 5559 11.5 6.5 9.0 1.0 5594 chr3L 13574583 intron bru-3 - chr3L 13577380 intron bru-3 - chr3L 13580177 intron bru-3 - chr3L_10_13575001 chr3L_13575001 RAL-843 2074 chr3L 13584041 13584102 chr3L 13584177 13584235 14 135 4.0 12.0 8.0 1.6 194 chr3L 13584041 intron bru-3 - chr3L 13584138 intron bru-3 - chr3L 13584235 exon bru-3 - chr3L_14_13580001 chr3L_13580001 RAL-843 2075 chr3L 13699312 13699381 chr3L 13699423 13699452 10 104 5.5 6.5 6.0 1.4 140 chr3L 13699312 intron bru-3 - chr3L 13699382 intron bru-3 - chr3L 13699452 intron bru-3 - chr3L_10_13695001 chr3L_13695001 RAL-843 2076 chr3L 13800029 13800081 chr3L 13800381 13800433 8 352 3.5 6.0 4.8 1.4 404 chr3L 13800029 intron bru-3 - chr3L 13800231 intron bru-3 - chr3L 13800433 intron bru-3 - chr3L_8_13800001 chr3L_13800001 RAL-843 2077 chr3L 13804500 13804568 chr3L 13822836 13822861 roo 37 18332 12.5 8.0 10.2 3.3 18361 chr3L 13804500 intergenic not near genes chr3L 13813680 intergenic not near genes chr3L 13822861 intergenic not near genes chr3L_37_13810001 chr3L_13810001 RAL-843 2078 chr3L 13866773 13866804 chr3L 13868391 13868422 16 1618 45.0 73.0 59.0 0.3 1649 chr3L 13866773 5` UTR CG8745 - chr3L 13867598 3` UTR dysc - chr3L 13868422 3` UTR dysc - chr3L_16_13865001 chr3L_13865001 RAL-843 2079 chr3L 13866769 13866841 chr3L 13868423 13868460 21 1622 47.0 63.0 55.0 0.4 1691 chr3L 13866769 5` UTR CG8745 - chr3L 13867614 3` UTR dysc - chr3L 13868460 3` UTR dysc - chr3L_21_13865001 chr3L_13865001 RAL-843 2080 chr3L 13884329 13884384 chr3L 13884470 13884525 19 141 13.5 5.5 9.5 1.8 196 chr3L 13884329 intron dysc - chr3L 13884427 intron dysc - chr3L 13884525 intron dysc - chr3L_19_13880001 chr3L_13880001 RAL-843 2081 chr3L 13903496 13903563 chr3L 13904132 13904201 18 637 4.0 3.5 3.8 3.8 705 chr3L 13903496 intergenic dysc - chr3L 13903848 intergenic not near genes chr3L 13904201 intergenic not near genes chr3L_18_13900001 chr3L_13900001 RAL-843 2082 chr3L 13911519 13911593 chr3L 13911771 13911837 15 248 5.0 8.0 6.5 2.0 318 chr3L 13911519 intron Rgl - chr3L 13911678 intron Rgl - chr3L 13911837 intron Rgl - chr3L_15_13910001 chr3L_13910001 RAL-843 2083 chr3L 13920382 13920431 chr3L 13920512 13920561 28 130 3.5 10.5 7.0 3.5 179 chr3L 13920382 intron Rgl - chr3L 13920472 intron Rgl - chr3L 13920561 intron Rgl - chr3L_28_13920001 chr3L_13920001 RAL-843 2084 chr3L 13954423 13954450 chr3L 13954552 13954579 6 129 9.5 9.5 9.5 0.6 156 chr3L 13954423 intron CG32137 + chr3L 13954501 intron CG32137 + chr3L 13954579 intron CG32137 + chr3L_6_13950001 chr3L_13950001 RAL-843 2085 chr3L 13993997 13994010 chr3L 13994128 13994141 7 131 2.5 13.0 7.8 0.8 144 chr3L 13993997 intergenic 26-29-p + chr3L 13994069 intergenic 26-29-p + chr3L 13994141 intergenic 26-29-p + chr3L_7_13990001 chr3L_13990001 RAL-843 2086 chr3L 14056731 14056744 chr3L 14056883 14056896 9 152 12.5 9.0 10.8 0.8 165 chr3L 14056731 intron CG32138 + chr3L 14056814 intron CG32138 + chr3L 14056896 intron CG32138 + chr3L_9_14055001 chr3L_14055001 RAL-843 2087 chr3L 14059476 14059525 chr3L 14059625 14059674 15 149 0.0 14.0 7.0 1.9 198 chr3L 14059476 intron CG32138 + chr3L 14059575 intron CG32138 + chr3L 14059674 intron CG32138 + chr3L_15_14055001 chr3L_14055001 RAL-843 2088 chr3L 14061621 14061691 chr3L 14061760 14061827 9 135 7.0 6.0 6.5 1.2 206 chr3L 14061621 intron CG32138 + chr3L 14061724 intron CG32138 + chr3L 14061827 intron CG32138 + chr3L_9_14060001 chr3L_14060001 RAL-843 2089 chr3L 14076237 14076320 chr3L 14076368 14076448 15 129 2.5 8.5 5.5 2.3 211 chr3L 14076237 intron btl + chr3L 14076342 intron btl + chr3L 14076448 intron btl + chr3L_15_14075001 chr3L_14075001 RAL-843 2090 chr3L 14117405 14117483 chr3L 14117542 14117620 14 137 3.5 2.5 3.0 3.5 215 chr3L 14117405 intron Sox21b - chr3L 14117512 intron Sox21b - chr3L 14117620 intron Sox21b - chr3L_14_14115001 chr3L_14115001 RAL-843 2091 chr3L 14141364 14141382 chr3L 14141501 14141519 5 137 12.0 0.0 6.0 0.7 155 chr3L 14141364 intergenic not near genes chr3L 14141442 intergenic not near genes chr3L 14141519 intergenic not near genes chr3L_5_14140001 chr3L_14140001 RAL-843 2092 chr3L 14174066 14174090 chr3L 14174192 14174216 12 126 11.5 5.5 8.5 1.3 150 chr3L 14174066 intergenic not near genes chr3L 14174141 intergenic not near genes chr3L 14174216 intergenic not near genes chr3L_12_14170001 chr3L_14170001 RAL-843 2093 chr3L 14175307 14175378 chr3L 14175505 14175576 8 198 6.0 4.0 5.0 1.3 269 chr3L 14175307 intergenic D - chr3L 14175442 intergenic D - chr3L 14175576 intergenic D - chr3L_8_14175001 chr3L_14175001 RAL-843 2094 chr3L 14185115 14185123 chr3L 14185241 14185249 4 126 26.5 9.5 18.0 0.2 134 chr3L 14185115 intergenic not near genes chr3L 14185182 intergenic not near genes chr3L 14185249 intergenic not near genes chr3L_4_14185001 chr3L_14185001 RAL-843 2095 chr3L 14185131 14185183 chr3L 14185233 14185309 20 124 13.0 10.5 11.8 1.6 178 chr3L 14185131 intergenic not near genes chr3L 14185220 intergenic not near genes chr3L 14185309 intergenic not near genes chr3L_20_14185001 chr3L_14185001 RAL-843 2096 chr3L 14234836 14234853 chr3L 14234964 14234981 7 128 11.0 7.5 9.2 0.7 145 chr3L 14234836 intergenic CG34244 -,CG7924 + chr3L 14234908 intergenic CG34244 -,CG7924 + chr3L 14234981 intergenic CG34244 -,CG7924 + chr3L_7_14230001 chr3L_14230001 RAL-843 2097 chr3L 14245525 14245588 chr3L 14245669 14245732 1360 43 143 16.0 8.5 12.2 3.3 207 chr3L 14245525 3` UTR CR44561 - chr3L 14245628 3` UTR CR44561 - chr3L 14245732 intergenic CR44561 -,CR44560 + chr3L_43_14245001 chr3L_14245001 RAL-843 2098 chr3L 14267359 14267393 chr3L 14271821 14271855 F-element 22 4462 7.5 0.0 3.8 4.6 4496 chr3L 14267359 intergenic not near genes chr3L 14269607 intergenic not near genes chr3L 14271855 intergenic not near genes chr3L_22_14265001 chr3L_14265001 RAL-843 2099 chr3L 14282543 14282603 chr3L 14282667 14282728 26 124 14.0 11.5 12.8 1.9 185 chr3L 14282543 intron fz + chr3L 14282636 intron fz + chr3L 14282728 intron fz + chr3L_26_14280001 chr3L_14280001 RAL-843 2100 chr3L 14295938 14296006 chr3L 14296474 14296542 roo 39 531 9.5 11.0 10.2 3.5 604 chr3L 14295938 intron fz + chr3L 14296240 intron fz + chr3L 14296542 intron fz + chr3L_39_14295001 chr3L_14295001 RAL-843 2101 chr3L 14312005 14312014 chr3L 14316847 14316865 X-element 5 4847 10.5 6.0 8.2 0.5 4860 chr3L 14312005 exon fz + chr3L 14314435 intron fz + chr3L 14316865 intron fz + chr3L_5_14310001 chr3L_14310001 RAL-843 2102 chr3L 14312026 14312051 chr3L 14316833 14316903 X-element 7 4839 6.0 4.0 5.0 1.2 4877 chr3L 14312026 exon fz + chr3L 14314464 intron fz + chr3L 14316903 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-843 2103 chr3L 14323544 14323611 chr3L 14323673 14323740 20 124 8.0 10.0 9.0 2.0 196 chr3L 14323544 intron,intron fz +,CR45025 - chr3L 14323642 intron,intron fz +,CR45025 - chr3L 14323740 intron,intron fz +,CR45025 - chr3L_20_14320001 chr3L_14320001 RAL-843 2104 chr3L 14324283 14324304 chr3L 14324423 14324432 11 139 12.5 6.5 9.5 1.0 149 chr3L 14324283 intron,intron fz +,CR45025 - chr3L 14324358 intron,intron fz +,CR45025 - chr3L 14324432 intron,intron fz +,CR45025 - chr3L_11_14320001 chr3L_14320001 RAL-843 2105 chr3L 14330674 14330735 chr3L 14330807 14330868 21 132 8.0 4.5 6.2 2.9 194 chr3L 14330674 intron fz + chr3L 14330771 intron fz + chr3L 14330868 intron fz + chr3L_21_14330001 chr3L_14330001 RAL-843 2106 chr3L 14331411 14331484 chr3L 14331544 14331606 32 130 7.5 9.0 8.2 3.5 195 chr3L 14331411 intron fz + chr3L 14331508 intron fz + chr3L 14331606 intron fz + chr3L_32_14330001 chr3L_14330001 RAL-843 2107 chr3L 14332151 14332187 chr3L 14332327 14332333 13 168 15.0 6.0 10.5 1.1 182 chr3L 14332151 intron fz + chr3L 14332242 intron fz + chr3L 14332333 intron fz + chr3L_13_14330001 chr3L_14330001 RAL-843 2108 chr3L 14332195 14332229 chr3L 14332323 14332406 19 174 6.0 5.0 5.5 2.9 211 chr3L 14332195 intron fz + chr3L 14332300 intron fz + chr3L 14332406 intron fz + chr3L_19_14330001 chr3L_14330001 RAL-843 2109 chr3L 14333597 14333626 chr3L 14333739 14333768 7 140 8.5 0.0 4.2 1.3 171 chr3L 14333597 intron fz + chr3L 14333682 intron fz + chr3L 14333768 intron fz + chr3L_7_14330001 chr3L_14330001 RAL-843 2110 chr3L 14356474 14356549 chr3L 14356604 14356679 26 128 9.0 11.5 10.2 2.3 205 chr3L 14356474 intron fz + chr3L 14356576 intron fz + chr3L 14356679 intron fz + chr3L_26_14355001 chr3L_14355001 RAL-843 2111 chr3L 14385040 14385112 chr3L 14385178 14385250 11 138 4.0 8.5 6.2 1.5 210 chr3L 14385040 intergenic not near genes chr3L 14385145 intergenic not near genes chr3L 14385250 intergenic not near genes chr3L_11_14385001 chr3L_14385001 RAL-843 2112 chr3L 14394544 14394550 chr3L 14394902 14394908 5 358 20.5 6.0 13.2 0.4 364 chr3L 14394544 intergenic not near genes chr3L 14394726 intergenic not near genes chr3L 14394908 intergenic not near genes chr3L_5_14390001 chr3L_14390001 RAL-843 2113 chr3L 14394552 14394610 chr3L 14394899 14394968 22 356 8.5 5.5 7.0 2.8 416 chr3L 14394552 intergenic not near genes chr3L 14394760 intergenic not near genes chr3L 14394968 intergenic not near genes chr3L_22_14390001 chr3L_14390001 RAL-843 2114 chr3L 14443954 14443988 chr3L 14445381 14445415 13 1427 17.5 9.0 13.2 0.9 1461 chr3L 14443954 intron bbg - chr3L 14444684 intron bbg - chr3L 14445415 intron bbg - chr3L_13_14440001 chr3L_14440001 RAL-843 2115 chr3L 14468406 14468433 chr3L 14473662 14473689 copia 14 5255 20.0 9.5 14.8 0.9 5283 chr3L 14468406 intron bbg - chr3L 14471048 intron bbg - chr3L 14473689 intron bbg - chr3L_14_14470001 chr3L_14470001 RAL-843 2116 chr3L 14468434 14468466 chr3L 14473655 14473722 copia 15 5254 12.5 7.0 9.8 1.4 5288 chr3L 14468434 intron bbg - chr3L 14471078 intron bbg - chr3L 14473722 intron bbg - chr3L_15_14470001 chr3L_14470001 RAL-843 2117 chr3L 14473846 14473859 chr3L 14473973 14473986 7 125 21.5 12.5 17.0 0.4 140 chr3L 14473846 intron bbg - chr3L 14473916 intron bbg - chr3L 14473986 intron bbg - chr3L_7_14470001 chr3L_14470001 RAL-843 2118 chr3L 14473860 14473878 chr3L 14473968 14474005 10 119 16.5 12.5 14.5 0.6 145 chr3L 14473860 intron bbg - chr3L 14473932 intron bbg - chr3L 14474005 intron bbg - chr3L_10_14470001 chr3L_14470001 RAL-843 2119 chr3L 14485972 14486046 chr3L 14486103 14486177 29 131 4.5 10.5 7.5 3.4 205 chr3L 14485972 intron bbg - chr3L 14486074 intron bbg - chr3L 14486177 intron bbg - chr3L_29_14485001 chr3L_14485001 RAL-843 2120 chr3L 14522058 14522123 chr3L 14522202 14522249 23 146 7.5 8.5 8.0 2.6 191 chr3L 14522058 intron bbg - chr3L 14522154 intron bbg - chr3L 14522249 intron bbg - chr3L_23_14520001 chr3L_14520001 RAL-843 2121 chr3L 14531211 14531238 chr3L 14531358 14531391 4 151 5.0 10.5 7.8 0.5 180 chr3L 14531211 intron bbg - chr3L 14531301 intron bbg - chr3L 14531391 intron bbg - chr3L_4_14530001 chr3L_14530001 RAL-843 2122 chr3L 14585839 14585845 chr3L 14585963 14585971 4 126 0.0 13.5 6.8 0.5 132 chr3L 14585839 intron HGTX - chr3L 14585905 intron HGTX - chr3L 14585971 intron HGTX - chr3L_4_14585001 chr3L_14585001 RAL-843 2123 chr3L 14599342 14599400 chr3L 14599452 14599527 23 122 11.5 10.5 11.0 1.9 185 chr3L 14599342 5` UTR HGTX - chr3L 14599434 5` UTR HGTX - chr3L 14599527 5` UTR HGTX - chr3L_23_14595001 chr3L_14595001 RAL-843 2124 chr3L 14633333 14633393 chr3L 14633490 14633551 26 155 8.5 9.0 8.8 2.7 218 chr3L 14633333 exon dlp + chr3L 14633442 intron dlp + chr3L 14633551 intron dlp + chr3L_26_14630001 chr3L_14630001 RAL-843 2125 chr3L 14702004 14702017 chr3L 14702133 14702146 7 129 6.0 13.5 9.8 0.6 142 chr3L 14702004 intron ome + chr3L 14702075 intron ome + chr3L 14702146 intron ome + chr3L_7_14700001 chr3L_14700001 RAL-843 2126 chr3L 14721147 14721172 chr3L 14723035 14723065 Rt1c 9 1887 14.5 11.0 12.8 0.7 1918 chr3L 14721147 intron ome + chr3L 14722106 intron ome + chr3L 14723065 intron ome + chr3L_9_14720001 chr3L_14720001 RAL-843 2127 chr3L 14721178 14721201 chr3L 14723030 14723094 Rt1c 6 1882 7.0 9.5 8.2 0.7 1916 chr3L 14721178 intron ome + chr3L 14722136 intron ome + chr3L 14723094 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-843 2128 chr3L 14725561 14725632 chr3L 14728605 14728607 Doc 12 3036 3.0 9.0 6.0 1.7 3046 chr3L 14725561 intron ome + chr3L 14727084 intron ome + chr3L 14728607 intron ome + chr3L_12_14725001 chr3L_14725001 RAL-843 2129 chr3L 14747429 14747496 chr3L 14747686 14747754 16 255 5.0 7.5 6.2 2.2 325 chr3L 14747429 3` UTR ome + chr3L 14747592 3` UTR ome + chr3L 14747754 3` UTR ome + chr3L_16_14745001 chr3L_14745001 RAL-843 2130 chr3L 14751312 14751344 chr3L 14751412 14751420 10 93 17.5 12.0 14.8 0.6 108 chr3L 14751312 5` UTR,exon CG42507 -,Trl - chr3L 14751366 5` UTR,exon CG42507 -,Trl - chr3L 14751420 5` UTR,exon CG42507 -,Trl - chr3L_10_14750001 chr3L_14750001 RAL-843 2131 chr3L 14840308 14840381 chr3L 14840463 14840532 15 151 0.5 9.0 4.8 2.6 224 chr3L 14840308 intron CG17839 + chr3L 14840420 intron CG17839 + chr3L 14840532 intron CG17839 + chr3L_15_14840001 chr3L_14840001 RAL-843 2132 chr3L 14912148 14912198 chr3L 14912280 14912330 19 132 11.0 8.0 9.5 1.8 182 chr3L 14912148 intron DCX-EMAP + chr3L 14912239 intron DCX-EMAP + chr3L 14912330 intron DCX-EMAP + chr3L_19_14910001 chr3L_14910001 RAL-843 2133 chr3L 14914036 14914102 chr3L 14914232 14914298 25 196 5.5 6.5 6.0 3.6 262 chr3L 14914036 intron DCX-EMAP + chr3L 14914167 intron DCX-EMAP + chr3L 14914298 intron DCX-EMAP + chr3L_25_14910001 chr3L_14910001 RAL-843 2134 chr3L 14922059 14922067 chr3L 14922217 14922225 4 157 20.5 0.5 10.5 0.3 166 chr3L 14922059 intron DCX-EMAP + chr3L 14922142 intron DCX-EMAP + chr3L 14922225 intron DCX-EMAP + chr3L_4_14920001 chr3L_14920001 RAL-843 2135 chr3L 14922078 14922134 chr3L 14922214 14922278 20 152 6.0 0.5 3.2 4.8 200 chr3L 14922078 intron DCX-EMAP + chr3L 14922178 intron DCX-EMAP + chr3L 14922278 intron DCX-EMAP + chr3L_20_14920001 chr3L_14920001 RAL-843 2136 chr3L 14923428 14923478 chr3L 14923555 14923608 7 127 0.5 14.0 7.2 0.9 180 chr3L 14923428 intron DCX-EMAP + chr3L 14923518 intron DCX-EMAP + chr3L 14923608 intron DCX-EMAP + chr3L_7_14920001 chr3L_14920001 RAL-843 2137 chr3L 14924900 14924964 chr3L 14925085 14925149 20 185 8.5 5.0 6.8 2.6 249 chr3L 14924900 intron DCX-EMAP + chr3L 14925024 intron DCX-EMAP + chr3L 14925149 intron DCX-EMAP + chr3L_20_14925001 chr3L_14925001 RAL-843 2138 chr3L 14970718 14970764 chr3L 14971078 14971124 F-element 6 360 9.5 3.5 6.5 0.8 406 chr3L 14970718 intergenic Tom + chr3L 14970921 intergenic not near genes chr3L 14971124 intergenic not near genes chr3L_6_14970001 chr3L_14970001 RAL-843 2139 chr3L 14993426 14993493 chr3L 14993564 14993616 31 142 7.0 0.0 3.5 6.9 190 chr3L 14993426 intron Zip71B + chr3L 14993521 intron Zip71B + chr3L 14993616 intron Zip71B + chr3L_31_14990001 chr3L_14990001 RAL-843 2140 chr3L 15084726 15084739 chr3L 15084856 15084869 4 130 7.5 3.5 5.5 0.6 143 chr3L 15084726 intron cp309 - chr3L 15084798 intron cp309 - chr3L 15084869 intron cp309 - chr3L_4_15080001 chr3L_15080001 RAL-843 2141 chr3L 15085000 15085081 chr3L 15086216 15086297 1360 31 1216 5.5 6.5 6.0 4.4 1297 chr3L 15085000 intron cp309 - chr3L 15085648 intron cp309 - chr3L 15086297 intron cp309 - chr3L_31_15085001 chr3L_15085001 RAL-843 2142 chr3L 15094928 15094964 chr3L 15095074 15095110 12 146 4.0 7.5 5.8 1.8 182 chr3L 15094928 intergenic cp309 -,CG6945 -,Aats-gly + chr3L 15095019 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095110 intergenic Aats-gly +,cp309 -,CG6945 - chr3L_12_15095001 chr3L_15095001 RAL-843 2143 chr3L 15146115 15146173 chr3L 15146242 15146312 14 129 0.0 7.5 3.8 2.9 197 chr3L 15146115 3` UTR Pex3 + chr3L 15146214 3` UTR Pex3 + chr3L 15146312 3` UTR Pex3 + chr3L_14_15145001 chr3L_15145001 RAL-843 2144 chr3L 15151169 15151239 chr3L 15151403 15151473 28 232 5.5 4.5 5.0 4.7 304 chr3L 15151169 intron FucTA + chr3L 15151321 intron FucTA + chr3L 15151473 exon FucTA + chr3L_28_15150001 chr3L_15150001 RAL-843 2145 chr3L 15164985 15165032 chr3L 15165133 15165138 9 143 9.0 0.0 4.5 1.6 153 chr3L 15164985 intergenic not near genes chr3L 15165062 intergenic not near genes chr3L 15165138 intergenic not near genes chr3L_9_15165001 chr3L_15165001 RAL-843 2146 chr3L 15174586 15174611 chr3L 15174728 15174770 9 155 6.5 14.0 10.2 0.8 184 chr3L 15174586 intergenic not near genes chr3L 15174678 intergenic not near genes chr3L 15174770 intergenic not near genes chr3L_9_15170001 chr3L_15170001 RAL-843 2147 chr3L 15179812 15179830 chr3L 15179949 15179967 5 137 23.5 7.5 15.5 0.3 155 chr3L 15179812 intergenic not near genes chr3L 15179890 intergenic not near genes chr3L 15179967 intergenic not near genes chr3L_5_15175001 chr3L_15175001 RAL-843 2148 chr3L 15179838 15179877 chr3L 15179944 15180013 19 131 13.0 8.0 10.5 1.7 175 chr3L 15179838 intergenic not near genes chr3L 15179926 intergenic not near genes chr3L 15180013 intergenic not near genes chr3L_19_15175001 chr3L_15175001 RAL-843 2149 chr3L 15185482 15185505 chr3L 15185612 15185646 13 137 6.0 11.5 8.8 1.3 164 chr3L 15185482 intergenic not near genes chr3L 15185564 intergenic not near genes chr3L 15185646 intergenic not near genes chr3L_13_15185001 chr3L_15185001 RAL-843 2150 chr3L 15233517 15233571 chr3L 15233643 15233702 16 131 5.0 2.5 3.8 3.3 185 chr3L 15233517 intergenic not near genes chr3L 15233610 intergenic not near genes chr3L 15233702 intergenic not near genes chr3L_16_15230001 chr3L_15230001 RAL-843 2151 chr3L 15257384 15257433 chr3L 15257647 15257696 20 262 3.0 2.5 2.8 5.3 312 chr3L 15257384 intergenic not near genes chr3L 15257540 intergenic not near genes chr3L 15257696 intergenic not near genes chr3L_20_15255001 chr3L_15255001 RAL-843 2152 chr3L 15261606 15261622 chr3L 15261731 15261747 9 125 7.0 12.5 9.8 0.8 141 chr3L 15261606 intergenic not near genes chr3L 15261676 intergenic not near genes chr3L 15261747 intergenic not near genes chr3L_9_15260001 chr3L_15260001 RAL-843 2153 chr3L 15261626 15261635 chr3L 15261736 15261761 4 121 6.5 12.5 9.5 0.4 135 chr3L 15261626 intergenic not near genes chr3L 15261694 intergenic not near genes chr3L 15261761 intergenic not near genes chr3L_4_15260001 chr3L_15260001 RAL-843 2154 chr3L 15264030 15264050 chr3L 15264157 15264177 10 127 0.0 0.0 0.0 10.0 147 chr3L 15264030 intergenic not near genes chr3L 15264104 intergenic not near genes chr3L 15264177 intergenic not near genes chr3L_10_15260001 chr3L_15260001 RAL-843 2155 chr3L 15265723 15265799 chr3L 15265853 15265929 24 129 9.0 12.5 10.8 2.0 206 chr3L 15265723 intergenic not near genes chr3L 15265826 intergenic not near genes chr3L 15265929 intergenic not near genes chr3L_24_15265001 chr3L_15265001 RAL-843 2156 chr3L 15295726 15295784 chr3L 15298613 15298677 gypsy5 7 2886 10.0 7.0 8.5 0.7 2951 chr3L 15295726 intergenic not near genes chr3L 15297202 intergenic not near genes chr3L 15298677 intergenic Best4 + chr3L_7_15295001 chr3L_15295001 RAL-843 2157 chr3L 15320869 15320899 chr3L 15320950 15321002 5 94 11.0 13.5 12.2 0.4 133 chr3L 15320869 intergenic not near genes chr3L 15320936 intergenic not near genes chr3L 15321002 intergenic not near genes chr3L_5_15320001 chr3L_15320001 RAL-843 2158 chr3L 15358322 15358381 chr3L 15358502 15358562 26 181 9.0 9.0 9.0 2.6 240 chr3L 15358322 intergenic not near genes chr3L 15358442 intergenic not near genes chr3L 15358562 intergenic not near genes chr3L_26_15355001 chr3L_15355001 RAL-843 2159 chr3L 15384914 15384981 chr3L 15385092 15385159 33 171 11.5 7.0 9.2 3.2 245 chr3L 15384914 intergenic not near genes chr3L 15385036 intergenic not near genes chr3L 15385159 intergenic not near genes chr3L_33_15385001 chr3L_15385001 RAL-843 2160 chr3L 15393619 15393686 chr3L 15393871 15393938 25 251 8.5 7.5 8.0 2.8 319 chr3L 15393619 intergenic not near genes chr3L 15393778 intergenic not near genes chr3L 15393938 intergenic not near genes chr3L_25_15390001 chr3L_15390001 RAL-843 2161 chr3L 15405980 15406053 chr3L 15406112 15406142 17 129 3.5 6.0 4.8 2.9 162 chr3L 15405980 intergenic not near genes chr3L 15406061 intergenic not near genes chr3L 15406142 intergenic not near genes chr3L_17_15405001 chr3L_15405001 RAL-843 2162 chr3L 15423718 15423782 chr3L 15426612 15426676 opus 23 2893 5.0 0.5 2.8 6.1 2958 chr3L 15423718 intergenic not near genes chr3L 15425197 intergenic not near genes chr3L 15426676 intergenic not near genes chr3L_23_15425001 chr3L_15425001 RAL-843 2163 chr3L 15443543 15443604 chr3L 15443669 15443731 10 126 7.5 4.0 5.8 1.5 188 chr3L 15443543 intergenic not near genes chr3L 15443637 intergenic not near genes chr3L 15443731 intergenic not near genes chr3L_10_15440001 chr3L_15440001 RAL-843 2164 chr3L 15453123 15453134 chr3L 15453250 15453262 7 128 8.0 5.5 6.8 0.9 139 chr3L 15453123 intergenic not near genes chr3L 15453192 intergenic not near genes chr3L 15453262 intergenic not near genes chr3L_7_15450001 chr3L_15450001 RAL-843 2165 chr3L 15465987 15466130 chr3L 15466119 15466276 29 147 0.0 0.0 0.0 29.0 289 chr3L 15465987 intergenic not near genes chr3L 15466132 intergenic not near genes chr3L 15466276 intergenic not near genes chr3L_29_15465001 chr3L_15465001 RAL-843 2166 chr3L 15466474 15466546 chr3L 15466608 15466672 17 133 3.5 5.5 4.5 3.1 198 chr3L 15466474 intergenic not near genes chr3L 15466573 intergenic not near genes chr3L 15466672 intergenic not near genes chr3L_17_15465001 chr3L_15465001 RAL-843 2167 chr3L 15472610 15472647 chr3L 15472737 15472774 13 126 21.0 18.5 19.8 0.6 164 chr3L 15472610 3` UTR CG7804 - chr3L 15472692 exon CG7804 - chr3L 15472774 exon CG7804 - chr3L_13_15470001 chr3L_15470001 RAL-843 2168 chr3L 15482375 15482441 chr3L 15482517 15482583 23 142 3.5 6.5 5.0 3.8 208 chr3L 15482375 intergenic not near genes chr3L 15482479 intergenic not near genes chr3L 15482583 intergenic not near genes chr3L_23_15480001 chr3L_15480001 RAL-843 2169 chr3L 15493265 15493345 chr3L 15493410 15493490 16 145 4.0 0.0 2.0 5.3 225 chr3L 15493265 exon CG12355 - chr3L 15493378 intron CG12355 - chr3L 15493490 5` UTR CG12355 - chr3L_16_15490001 chr3L_15490001 RAL-843 2170 chr3L 15540898 15540924 chr3L 15541036 15541061 6 137 9.0 10.0 9.5 0.6 163 chr3L 15540898 intron CrebA + chr3L 15540980 intron CrebA + chr3L 15541061 intron CrebA + chr3L_6_15540001 chr3L_15540001 RAL-843 2171 chr3L 15541575 15541641 chr3L 15541716 15541782 25 141 11.0 1.0 6.0 3.6 207 chr3L 15541575 intron CrebA + chr3L 15541678 intron CrebA + chr3L 15541782 intron CrebA + chr3L_25_15540001 chr3L_15540001 RAL-843 2172 chr3L 15554881 15554943 chr3L 15556718 15556780 S-element 32 1837 7.0 7.0 7.0 4.0 1899 chr3L 15554881 intron AGO2 + chr3L 15555830 intron AGO2 + chr3L 15556780 intron AGO2 + chr3L_32_15555001 chr3L_15555001 RAL-843 2173 chr3L 15600119 15600197 chr3L 15600254 15600348 20 150 7.0 0.0 3.5 4.4 229 chr3L 15600119 intron RhoGAP71E + chr3L 15600234 intron RhoGAP71E + chr3L 15600348 intron RhoGAP71E + chr3L_20_15600001 chr3L_15600001 RAL-843 2174 chr3L 15614004 15614037 chr3L 15614134 15614167 13 128 4.0 11.0 7.5 1.5 163 chr3L 15614004 exon comm3 - chr3L 15614086 intron comm3 - chr3L 15614167 intron comm3 - chr3L_13_15610001 chr3L_15610001 RAL-843 2175 chr3L 15633145 15633207 chr3L 15633275 15633337 12 130 5.0 3.5 4.2 2.3 192 chr3L 15633145 intron comm3 - chr3L 15633241 intron comm3 - chr3L 15633337 intron comm3 - chr3L_12_15630001 chr3L_15630001 RAL-843 2176 chr3L 15730187 15730248 chr3L 15730398 15730460 23 210 6.5 8.5 7.5 2.7 273 chr3L 15730187 intergenic not near genes chr3L 15730324 intergenic not near genes chr3L 15730460 intergenic not near genes chr3L_23_15730001 chr3L_15730001 RAL-843 2177 chr3L 15737328 15737403 chr3L 15737468 15737543 21 139 5.0 5.0 5.0 3.5 215 chr3L 15737328 intergenic not near genes chr3L 15737436 intergenic not near genes chr3L 15737543 intergenic not near genes chr3L_21_15735001 chr3L_15735001 RAL-843 2178 chr3L 15742914 15742988 chr3L 15743123 15743206 6 208 7.0 0.0 3.5 1.3 292 chr3L 15742914 intergenic not near genes chr3L 15743060 intergenic not near genes chr3L 15743206 intergenic not near genes chr3L_6_15740001 chr3L_15740001 RAL-843 2179 chr3L 15744589 15744615 chr3L 15745016 15745039 13 425 48.5 46.0 47.2 0.3 450 chr3L 15744589 intergenic not near genes chr3L 15744814 intergenic not near genes chr3L 15745039 intergenic not near genes chr3L_13_15740001 chr3L_15740001 RAL-843 2180 chr3L 15744581 15744647 chr3L 15745040 15745071 11 428 48.0 43.5 45.8 0.2 490 chr3L 15744581 intergenic not near genes chr3L 15744826 intergenic not near genes chr3L 15745071 intergenic not near genes chr3L_11_15740001 chr3L_15740001 RAL-843 2181 chr3L 15762994 15763051 chr3L 15763148 15763205 19 150 4.0 4.0 4.0 3.8 211 chr3L 15762994 intergenic not near genes chr3L 15763100 intergenic not near genes chr3L 15763205 intergenic not near genes chr3L_19_15760001 chr3L_15760001 RAL-843 2182 chr3L 15769006 15769009 chr3L 15769289 15769292 5 283 9.0 21.0 15.0 0.3 286 chr3L 15769006 intergenic not near genes chr3L 15769149 intergenic not near genes chr3L 15769292 intergenic not near genes chr3L_5_15765001 chr3L_15765001 RAL-843 2183 chr3L 15774852 15774884 chr3L 15774992 15775024 16 139 5.5 6.0 5.8 2.4 172 chr3L 15774852 intergenic not near genes chr3L 15774938 intergenic not near genes chr3L 15775024 intergenic not near genes chr3L_16_15770001 chr3L_15770001 RAL-843 2184 chr3L 15781604 15781685 chr3L 15781785 15781884 6 185 3.5 0.0 1.8 2.1 280 chr3L 15781604 intergenic not near genes chr3L 15781744 intergenic not near genes chr3L 15781884 intergenic not near genes chr3L_6_15780001 chr3L_15780001 RAL-843 2185 chr3L 15809123 15809193 chr3L 15809257 15809327 25 133 6.5 9.5 8.0 2.8 204 chr3L 15809123 intergenic CG6244 +,CG13445 + chr3L 15809225 intergenic CG13445 +,CG6244 + chr3L 15809327 intergenic CG13445 +,CG6244 + chr3L_25_15805001 chr3L_15805001 RAL-843 2186 chr3L 15840411 15840464 chr3L 15840549 15840579 14 134 4.5 10.0 7.2 1.7 168 chr3L 15840411 intron CG32150 - chr3L 15840495 intron CG32150 - chr3L 15840579 intron CG32150 - chr3L_14_15840001 chr3L_15840001 RAL-843 2187 chr3L 15883156 15883225 chr3L 15883487 15883528 30 339 4.5 6.5 5.5 4.6 372 chr3L 15883156 intron pHCl - chr3L 15883342 intron pHCl - chr3L 15883528 intron pHCl - chr3L_30_15880001 chr3L_15880001 RAL-843 2188 chr3L 15899212 15899248 chr3L 15899789 15899844 jockey 8 597 5.0 0.5 2.8 2.1 632 chr3L 15899212 intergenic pHCl - chr3L 15899528 intergenic pHCl - chr3L 15899844 intergenic sff - chr3L_8_15895001 chr3L_15895001 RAL-843 2189 chr3L 15929149 15929222 chr3L 15938346 15938419 roo 26 9195 4.0 4.5 4.2 5.0 9270 chr3L 15929149 intron Pka-C3 - chr3L 15933784 intron Pka-C3 - chr3L 15938419 intron Pka-C3 - chr3L_26_15930001 chr3L_15930001 RAL-843 2190 chr3L 15946471 15946536 chr3L 15946587 15946651 12 133 8.5 1.0 4.8 2.1 180 chr3L 15946471 intron Pka-C3 - chr3L 15946561 intron Pka-C3 - chr3L 15946651 intron Pka-C3 - chr3L_12_15945001 chr3L_15945001 RAL-843 2191 chr3L 15948702 15948771 chr3L 15948835 15948901 24 128 5.5 8.0 6.8 3.1 199 chr3L 15948702 intron Pka-C3 - chr3L 15948802 intron Pka-C3 - chr3L 15948901 intron Pka-C3 - chr3L_24_15945001 chr3L_15945001 RAL-843 2192 chr3L 15981638 15981708 chr3L 15981774 15981825 13 135 12.0 9.5 10.8 1.1 187 chr3L 15981638 intron,3` UTR brm -,CG17027 + chr3L 15981732 intron,3` UTR brm -,CG17027 + chr3L 15981825 intron,3` UTR brm -,CG17027 + chr3L_13_15980001 chr3L_15980001 RAL-843 2193 chr3L 15989186 15989223 chr3L 15989319 15989356 15 131 6.5 5.5 6.0 2.1 170 chr3L 15989186 exon Hip14 + chr3L 15989271 intron Hip14 + chr3L 15989356 intron Hip14 + chr3L_15_15985001 chr3L_15985001 RAL-843 2194 chr3L 16070693 16070759 chr3L 16070820 16070886 19 127 12.0 10.5 11.2 1.6 193 chr3L 16070693 intron Mbs + chr3L 16070790 intron Mbs + chr3L 16070886 exon Mbs + chr3L_19_16070001 chr3L_16070001 RAL-843 2195 chr3L 16149158 16149176 chr3L 16149297 16149315 8 139 15.0 5.5 10.2 0.7 157 chr3L 16149158 intron CG5151 - chr3L 16149236 intron CG5151 - chr3L 16149315 intron CG5151 - chr3L_8_16145001 chr3L_16145001 RAL-843 2196 chr3L 16149180 16149228 chr3L 16149319 16149363 18 139 6.5 9.0 7.8 2.0 183 chr3L 16149180 intron CG5151 - chr3L 16149272 intron CG5151 - chr3L 16149363 intron CG5151 - chr3L_18_16145001 chr3L_16145001 RAL-843 2197 chr3L 16162594 16162612 chr3L 16162726 16162746 9 134 10.5 13.0 11.8 0.7 152 chr3L 16162594 intron CG5151 - chr3L 16162670 intron CG5151 - chr3L 16162746 intron CG5151 - chr3L_9_16160001 chr3L_16160001 RAL-843 2198 chr3L 16184053 16184102 chr3L 16188922 16188971 X-element 22 4868 2.5 8.5 5.5 3.4 4918 chr3L 16184053 intergenic not near genes chr3L 16186512 intergenic not near genes chr3L 16188971 intergenic not near genes chr3L_22_16185001 chr3L_16185001 RAL-843 2199 chr3L 16194302 16194363 chr3L 16194422 16194476 25 116 10.5 11.0 10.8 2.1 174 chr3L 16194302 intergenic not near genes chr3L 16194389 intergenic not near genes chr3L 16194476 intergenic not near genes chr3L_25_16190001 chr3L_16190001 RAL-843 2200 chr3L 16212766 16212811 chr3L 16212907 16212947 15 139 11.5 0.0 5.8 2.2 181 chr3L 16212766 intergenic CG13073 - chr3L 16212856 intergenic CG13073 - chr3L 16212947 intergenic CG13073 - chr3L_15_16210001 chr3L_16210001 RAL-843 2201 chr3L 16236295 16236366 chr3L 16236460 16236531 33 164 4.5 6.0 5.2 5.3 236 chr3L 16236295 3` UTR l(3)72Dp + chr3L 16236413 3` UTR l(3)72Dp + chr3L 16236531 3` UTR l(3)72Dp + chr3L_33_16235001 chr3L_16235001 RAL-843 2202 chr3L 16279041 16279104 chr3L 16279172 16279235 19 131 4.0 9.0 6.5 2.5 194 chr3L 16279041 exon CG13050 - chr3L 16279138 intron CG13050 - chr3L 16279235 5` UTR CG13050 - chr3L_19_16275001 chr3L_16275001 RAL-843 2203 chr3L 16387970 16388021 chr3L 16388091 16388103 20 115 7.5 11.0 9.2 2.0 133 chr3L 16387970 exon RAF2 + chr3L 16388036 exon RAF2 + chr3L 16388103 exon RAF2 + chr3L_20_16385001 chr3L_16385001 RAL-843 2204 chr3L 16435275 16435310 chr3L 16435401 16435436 11 126 12.0 4.5 8.2 1.2 161 chr3L 16435275 intron,intron CG33158 +,dsx-c73A - chr3L 16435356 intron,intron CG33158 +,dsx-c73A - chr3L 16435436 intron,intron CG33158 +,dsx-c73A - chr3L_11_16435001 chr3L_16435001 RAL-843 2205 chr3L 16443799 16443877 chr3L 16446189 16446267 Doc 32 2389 4.0 4.0 4.0 6.4 2468 chr3L 16443799 intron,intron CG33158 +,dsx-c73A - chr3L 16445033 intron,intron CG33158 +,dsx-c73A - chr3L 16446267 intron,intron CG33158 +,dsx-c73A - chr3L_32_16445001 chr3L_16445001 RAL-843 2206 chr3L 16446695 16446717 chr3L 16446835 16446857 8 140 0.0 15.0 7.5 0.9 162 chr3L 16446695 intron,intron CG33158 +,dsx-c73A - chr3L 16446776 intron,intron CG33158 +,dsx-c73A - chr3L 16446857 intron,intron CG33158 +,dsx-c73A - chr3L_8_16445001 chr3L_16445001 RAL-843 2207 chr3L 16452956 16453011 chr3L 16453083 16453138 7 127 12.0 0.0 6.0 1.0 182 chr3L 16452956 intron CG33158 + chr3L 16453047 intron CG33158 + chr3L 16453138 intron CG33158 + chr3L_7_16450001 chr3L_16450001 RAL-843 2208 chr3L 16457480 16457544 chr3L 16457626 16457689 12 145 9.0 8.0 8.5 1.3 209 chr3L 16457480 intron CG33158 + chr3L 16457584 intron CG33158 + chr3L 16457689 intron CG33158 + chr3L_12_16455001 chr3L_16455001 RAL-843 2209 chr3L 16493937 16493945 chr3L 16494504 16494512 jockey 8 567 22.0 11.0 16.5 0.5 575 chr3L 16493937 intron,exon,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494224 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494512 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_8_16490001 chr3L_16490001 RAL-843 2210 chr3L 16493947 16494001 chr3L 16494494 16494568 jockey 25 566 12.0 9.5 10.8 2.1 621 chr3L 16493947 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494258 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494568 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_25_16490001 chr3L_16490001 RAL-843 2211 chr3L 16509349 16509416 chr3L 16509550 16509617 39 200 9.5 7.0 8.2 4.2 268 chr3L 16509349 intron CG43373 - chr3L 16509483 intron CG43373 - chr3L 16509617 intron CG43373 - chr3L_39_16505001 chr3L_16505001 RAL-843 2212 chr3L 16514933 16514988 chr3L 16515774 16515825 24 850 7.0 11.0 9.0 2.4 892 chr3L 16514933 intron CG43373 - chr3L 16515379 intron CG43373 - chr3L 16515825 intron CG43373 - chr3L_24_16515001 chr3L_16515001 RAL-843 2213 chr3L 16520595 16520634 chr3L 16520774 16520805 15 176 0.0 12.5 6.2 2.1 210 chr3L 16520595 intron CG43373 - chr3L 16520700 intron CG43373 - chr3L 16520805 intron CG43373 - chr3L_15_16520001 chr3L_16520001 RAL-843 2214 chr3L 16540007 16540077 chr3L 16540145 16540215 24 138 7.5 9.5 8.5 2.5 208 chr3L 16540007 intron CG43373 - chr3L 16540111 intron CG43373 - chr3L 16540215 intron CG43373 - chr3L_24_16540001 chr3L_16540001 RAL-843 2215 chr3L 16563412 16563489 chr3L 16564817 16564882 35 1394 49.0 50.5 49.8 0.7 1470 chr3L 16563412 intergenic Mipp1 - chr3L 16564147 exon Mipp1 - chr3L 16564882 exon Mipp1 - chr3L_35_16560001 chr3L_16560001 RAL-843 2216 chr3L 16616473 16616539 chr3L 16621851 16621916 297 14 5376 6.0 10.0 8.0 1.6 5443 chr3L 16616473 3` UTR Abl - chr3L 16619194 3` UTR Abl - chr3L 16621916 3` UTR Abl - chr3L_14_16615001 chr3L_16615001 RAL-843 2217 chr3L 16635711 16635779 chr3L 16635848 16635910 23 133 11.5 10.0 10.8 1.9 199 chr3L 16635711 intron Abl - chr3L 16635810 intron Abl - chr3L 16635910 intron Abl - chr3L_23_16635001 chr3L_16635001 RAL-843 2218 chr3L 16684008 16684025 chr3L 16689279 16689296 copia 6 5271 7.0 10.0 8.5 0.6 5288 chr3L 16684008 intron,intron Lasp -,CG43954 - chr3L 16686652 intron,intron Lasp -,CG43954 - chr3L 16689296 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_6_16685001 chr3L_16685001 RAL-843 2219 chr3L 16714816 16714865 chr3L 16714950 16714959 13 131 5.0 10.5 7.8 1.5 143 chr3L 16714816 intron Dab + chr3L 16714888 intron Dab + chr3L 16714959 intron Dab + chr3L_13_16710001 chr3L_16710001 RAL-843 2220 chr3L 16757598 16757666 chr3L 16757738 16757806 21 140 11.5 8.5 10.0 1.9 208 chr3L 16757598 intergenic not near genes chr3L 16757702 intergenic not near genes chr3L 16757806 intergenic not near genes chr3L_21_16755001 chr3L_16755001 RAL-843 2221 chr3L 16807998 16808072 chr3L 16808124 16808201 27 127 8.0 13.0 10.5 2.3 203 chr3L 16807998 intron nudC + chr3L 16808100 intron nudC + chr3L 16808201 intron nudC + chr3L_27_16805001 chr3L_16805001 RAL-843 2222 chr3L 16818699 16818775 chr3L 16818825 16818901 42 126 10.5 13.0 11.8 3.3 202 chr3L 16818699 intron,intron nudC +,CG13024 - chr3L 16818800 intron,intron nudC +,CG13024 - chr3L 16818901 intron,intron nudC +,CG13024 - chr3L_42_16815001 chr3L_16815001 RAL-843 2223 chr3L 16844978 16845035 chr3L 16845141 16845198 21 163 8.5 7.0 7.8 2.4 220 chr3L 16844978 5` UTR CG9669 - chr3L 16845088 intergenic CG9669 -,CG9715 + chr3L 16845198 intergenic CG9715 +,CG9669 - chr3L_21_16845001 chr3L_16845001 RAL-843 2224 chr3L 16870817 16870876 chr3L 16870959 16871017 18 141 2.5 0.0 1.2 8.2 200 chr3L 16870817 intron Lmpt + chr3L 16870917 intron Lmpt + chr3L 16871017 intron Lmpt + chr3L_18_16870001 chr3L_16870001 RAL-843 2225 chr3L 16873301 16873355 chr3L 16873456 16873510 27 155 9.0 10.0 9.5 2.6 209 chr3L 16873301 intron Lmpt + chr3L 16873406 intron Lmpt + chr3L 16873510 intron Lmpt + chr3L_27_16870001 chr3L_16870001 RAL-843 2226 chr3L 16882274 16882304 chr3L 16882412 16882437 7 125 11.0 11.5 11.2 0.6 163 chr3L 16882274 intron Lmpt + chr3L 16882356 intron Lmpt + chr3L 16882437 intron Lmpt + chr3L_7_16880001 chr3L_16880001 RAL-843 2227 chr3L 16886285 16886328 chr3L 16886436 16886479 24 150 13.5 11.5 12.5 1.8 194 chr3L 16886285 intron Lmpt + chr3L 16886382 intron Lmpt + chr3L 16886479 intron Lmpt + chr3L_24_16885001 chr3L_16885001 RAL-843 2228 chr3L 16886845 16886866 chr3L 16886971 16886976 4 117 9.0 0.0 4.5 0.7 131 chr3L 16886845 intron Lmpt + chr3L 16886910 intron Lmpt + chr3L 16886976 intron Lmpt + chr3L_4_16885001 chr3L_16885001 RAL-843 2229 chr3L 16912900 16912954 chr3L 16913028 16913082 14 128 1.0 8.5 4.8 2.4 182 chr3L 16912900 intron Lmpt + chr3L 16912991 intron Lmpt + chr3L 16913082 intron Lmpt + chr3L_14_16910001 chr3L_16910001 RAL-843 2230 chr3L 16945685 16945693 chr3L 16954888 16954896 roo 5 9203 12.0 8.0 10.0 0.5 9211 chr3L 16945685 exon Obp73a + chr3L 16950290 intergenic not near genes chr3L 16954896 5` UTR Nc73EF + chr3L_5_16950001 chr3L_16950001 RAL-843 2231 chr3L 16945694 16945753 chr3L 16954886 16954956 roo 31 9193 3.5 7.5 5.5 4.8 9262 chr3L 16945694 exon Obp73a + chr3L 16950325 intergenic not near genes chr3L 16954956 5` UTR Nc73EF + chr3L_31_16950001 chr3L_16950001 RAL-843 2232 chr3L 17008415 17008421 chr3L 17008537 17008552 7 130 5.0 13.5 9.2 0.7 137 chr3L 17008415 intron CG3764 - chr3L 17008484 intron CG3764 - chr3L 17008552 intron CG3764 - chr3L_7_17005001 chr3L_17005001 RAL-843 2233 chr3L 17008425 17008467 chr3L 17008526 17008568 7 114 4.0 12.0 8.0 0.8 143 chr3L 17008425 intron CG3764 - chr3L 17008496 intron CG3764 - chr3L 17008568 intron CG3764 - chr3L_7_17005001 chr3L_17005001 RAL-843 2234 chr3L 17016116 17016182 chr3L 17016298 17016364 30 182 11.0 9.5 10.2 2.7 248 chr3L 17016116 5` UTR CG6664 - chr3L 17016240 intergenic CG6664 -,CG7728 + chr3L 17016364 intergenic CG7728 +,CG6664 - chr3L_30_17015001 chr3L_17015001 RAL-843 2235 chr3L 17034891 17034951 chr3L 17035124 17035189 G2 16 238 6.5 8.0 7.2 2.0 298 chr3L 17034891 intergenic not near genes chr3L 17035040 intergenic not near genes chr3L 17035189 intergenic beg + chr3L_16_17035001 chr3L_17035001 RAL-843 2236 chr3L 17084965 17085029 chr3L 17094164 17094228 roo 26 9199 11.5 17.5 14.5 1.7 9263 chr3L 17084965 intron Rbp6 - chr3L 17089596 intron Rbp6 - chr3L 17094228 intron Rbp6 - chr3L_26_17085001 chr3L_17085001 RAL-843 2237 chr3L 17120602 17120670 chr3L 17120728 17120796 25 126 7.5 6.5 7.0 3.1 194 chr3L 17120602 intron Rbp6 - chr3L 17120699 intron Rbp6 - chr3L 17120796 intron Rbp6 - chr3L_25_17120001 chr3L_17120001 RAL-843 2238 chr3L 17142685 17142748 chr3L 17142963 17143026 24 274 7.5 13.0 10.2 2.1 341 chr3L 17142685 intron Rbp6 - chr3L 17142856 intron Rbp6 - chr3L 17143026 intron Rbp6 - chr3L_24_17140001 chr3L_17140001 RAL-843 2239 chr3L 17142752 17142756 chr3L 17142959 17143034 4 260 5.5 12.5 9.0 0.4 282 chr3L 17142752 intron Rbp6 - chr3L 17142893 intron Rbp6 - chr3L 17143034 intron Rbp6 - chr3L_4_17140001 chr3L_17140001 RAL-843 2240 chr3L 17146921 17146977 chr3L 17147042 17147109 18 131 8.0 3.5 5.8 2.6 188 chr3L 17146921 intron Rbp6 - chr3L 17147015 intron Rbp6 - chr3L 17147109 intron Rbp6 - chr3L_18_17145001 chr3L_17145001 RAL-843 2241 chr3L 17149117 17149178 chr3L 17149248 17149248 9 124 10.5 1.5 6.0 1.3 131 chr3L 17149117 intron Rbp6 - chr3L 17149182 intron Rbp6 - chr3L 17149248 intron Rbp6 - chr3L_9_17145001 chr3L_17145001 RAL-843 2242 chr3L 17205933 17205953 chr3L 18193423 18193423 6 987483 18.0 16.5 17.2 0.3 987490 chr3L 17205933 intron Rbp6 - chr3L 17699678 intron Ccn + chr3L 18193423 intergenic not near genes chr3L_6_17695001 chr3L_17695001 RAL-843 2243 chr3L 17272198 17272262 chr3L 17272381 17272439 20 181 9.0 7.5 8.2 2.2 241 chr3L 17272198 intergenic not near genes chr3L 17272318 intergenic not near genes chr3L 17272439 intergenic not near genes chr3L_20_17270001 chr3L_17270001 RAL-843 2244 chr3L 17461969 17461996 chr3L 17462164 17462191 12 195 5.5 8.5 7.0 1.5 222 chr3L 17461969 intergenic not near genes chr3L 17462080 intergenic not near genes chr3L 17462191 intergenic not near genes chr3L_12_17460001 chr3L_17460001 RAL-843 2245 chr3L 17516938 17517006 chr3L 17524546 17524593 412 25 7606 6.0 9.0 7.5 2.9 7655 chr3L 17516938 intron CG7564 + chr3L 17520766 intron CG7564 + chr3L 17524593 3` UTR CG7564 + chr3L_25_17520001 chr3L_17520001 RAL-843 2246 chr3L 17678852 17678894 chr3L 17678986 17679028 12 134 6.5 0.0 3.2 2.9 176 chr3L 17678852 intron CG34251 + chr3L 17678940 intron CG34251 + chr3L 17679028 intron CG34251 + chr3L_12_17675001 chr3L_17675001 RAL-843 2247 chr3L 17690802 17690879 chr3L 17690932 17691006 15 129 2.0 6.5 4.2 2.9 204 chr3L 17690802 intron Ccn + chr3L 17690904 intron Ccn + chr3L 17691006 intron Ccn + chr3L_15_17690001 chr3L_17690001 RAL-843 2248 chr3L 17730808 17730868 chr3L 17738188 17738248 mdg1 16 7380 5.5 7.5 6.5 2.1 7440 chr3L 17730808 intron Ccn + chr3L 17734528 intron Ccn + chr3L 17738248 intron Ccn + chr3L_16_17730001 chr3L_17730001 RAL-843 2249 chr3L 17753308 17753353 chr3L 17753444 17753489 23 136 4.5 14.5 9.5 2.2 181 chr3L 17753308 exon Adgf-A - chr3L 17753398 intron Adgf-A - chr3L 17753489 exon Adgf-A - chr3L_23_17750001 chr3L_17750001 RAL-843 2250 chr3L 17758000 17758033 chr3L 17758115 17758148 8 123 10.5 6.5 8.5 0.8 148 chr3L 17758000 intron,intron Adgf-A -,Msi - chr3L 17758074 intron,intron Adgf-A -,Msi - chr3L 17758148 intron,intron,5` UTR Adgf-A -,Msi -,CG32182 + chr3L_8_17755001 chr3L_17755001 RAL-843 2251 chr3L 17758035 17758060 chr3L 17758112 17758186 17 118 7.0 6.5 6.8 2.2 151 chr3L 17758035 intron,intron Adgf-A -,Msi - chr3L 17758110 intron,intron Adgf-A -,Msi - chr3L 17758186 intron,intron,exon Adgf-A -,Msi -,CG32182 + chr3L_17_17755001 chr3L_17755001 RAL-843 2252 chr3L 17790409 17790420 chr3L 17790596 17790607 5 187 25.0 0.0 12.5 0.4 198 chr3L 17790409 intergenic not near genes chr3L 17790508 intergenic not near genes chr3L 17790607 intergenic CG42815 - chr3L_5_17790001 chr3L_17790001 RAL-843 2253 chr3L 17790424 17790485 chr3L 17790594 17790888 20 211 7.0 0.0 3.5 4.4 464 chr3L 17790424 intergenic not near genes chr3L 17790656 intergenic CG42815 - chr3L 17790888 intergenic CG42815 - chr3L_20_17790001 chr3L_17790001 RAL-843 2254 chr3L 17790594 17790634 chr3L 17790909 17790949 12 313 0.0 13.0 6.5 1.6 355 chr3L 17790594 intergenic CG42815 - chr3L 17790772 intergenic CG42815 - chr3L 17790949 intergenic CG42815 - chr3L_12_17790001 chr3L_17790001 RAL-843 2255 chr3L 17791894 17791914 chr3L 17792021 17792041 9 127 6.0 5.0 5.5 1.4 147 chr3L 17791894 intergenic CG42816 -,CG42815 - chr3L 17791968 intergenic CG42816 -,CG42815 - chr3L 17792041 intergenic CG42816 - chr3L_9_17790001 chr3L_17790001 RAL-843 2256 chr3L 17799767 17799837 chr3L 17801604 17801674 S-element 19 1837 7.0 8.5 7.8 2.2 1907 chr3L 17799767 intron NUCB1 - chr3L 17800720 intron NUCB1 - chr3L 17801674 intron NUCB1 - chr3L_19_17800001 chr3L_17800001 RAL-843 2257 chr3L 17823622 17823688 chr3L 17823830 17823896 21 208 6.5 6.0 6.2 2.9 274 chr3L 17823622 intron Grd + chr3L 17823759 intron Grd + chr3L 17823896 intron Grd + chr3L_21_17820001 chr3L_17820001 RAL-843 2258 chr3L 17884644 17884707 chr3L 17884794 17884856 14 149 3.5 0.0 1.8 5.0 212 chr3L 17884644 intergenic CG5506 - chr3L 17884750 intergenic CG5506 - chr3L 17884856 intergenic CG5506 - chr3L_14_17880001 chr3L_17880001 RAL-843 2259 chr3L 17887827 17887875 chr3L 17887963 17888010 11 135 5.5 11.5 8.5 1.2 183 chr3L 17887827 intron CG7402 + chr3L 17887918 intron CG7402 + chr3L 17888010 intron CG7402 + chr3L_11_17885001 chr3L_17885001 RAL-843 2260 chr3L 17918358 17918375 chr3L 17921174 17921223 opus 4 2841 12.5 5.0 8.8 0.4 2865 chr3L 17918358 intergenic not near genes chr3L 17919790 intergenic not near genes chr3L 17921223 intergenic not near genes chr3L_4_17915001 chr3L_17915001 RAL-843 2261 chr3L 17918376 17918404 chr3L 17921173 17921228 opus 7 2841 7.5 4.5 6.0 1.0 2852 chr3L 17918376 intergenic not near genes chr3L 17919802 intergenic not near genes chr3L 17921228 intergenic not near genes chr3L_7_17915001 chr3L_17915001 RAL-843 2262 chr3L 17991533 17991583 chr3L 17991661 17991711 24 128 7.5 10.0 8.8 2.4 178 chr3L 17991533 intron Eip75B - chr3L 17991622 intron Eip75B - chr3L 17991711 intron Eip75B - chr3L_24_17990001 chr3L_17990001 RAL-843 2263 chr3L 17999726 17999802 chr3L 17999855 17999932 20 129 1.5 6.5 4.0 4.0 206 chr3L 17999726 intron Eip75B - chr3L 17999829 intron Eip75B - chr3L 17999932 intron Eip75B - chr3L_20_17995001 chr3L_17995001 RAL-843 2264 chr3L 18002675 18002741 chr3L 18002812 18002878 19 137 6.5 4.5 5.5 2.9 203 chr3L 18002675 intron Eip75B - chr3L 18002776 intron Eip75B - chr3L 18002878 intron Eip75B - chr3L_19_18000001 chr3L_18000001 RAL-843 2265 chr3L 18013931 18013946 chr3L 18014070 18014085 7 139 9.0 0.5 4.8 1.2 154 chr3L 18013931 intron Eip75B - chr3L 18014008 intron Eip75B - chr3L 18014085 intron Eip75B - chr3L_7_18010001 chr3L_18010001 RAL-843 2266 chr3L 18029908 18029940 chr3L 18030035 18030067 10 126 17.0 0.0 8.5 1.1 159 chr3L 18029908 intron Eip75B - chr3L 18029988 intron Eip75B - chr3L 18030067 intron Eip75B - chr3L_10_18025001 chr3L_18025001 RAL-843 2267 chr3L 18047662 18047725 chr3L 18056768 18056831 roo 18 9106 4.5 7.0 5.8 2.6 9169 chr3L 18047662 intron Eip75B - chr3L 18052246 intron Eip75B - chr3L 18056831 intron Eip75B - chr3L_18_18050001 chr3L_18050001 RAL-843 2268 chr3L 18064011 18064076 chr3L 18064147 18064209 26 136 5.0 5.0 5.0 4.3 198 chr3L 18064011 intron Eip75B - chr3L 18064110 intron Eip75B - chr3L 18064209 intron Eip75B - chr3L_26_18060001 chr3L_18060001 RAL-843 2269 chr3L 18092732 18092758 chr3L 18092897 18092923 12 165 17.5 0.0 8.8 1.2 191 chr3L 18092732 intron CG13698 - chr3L 18092828 intron CG13698 - chr3L 18092923 intron CG13698 - chr3L_12_18090001 chr3L_18090001 RAL-843 2270 chr3L 18106211 18106273 chr3L 18106375 18106402 15 166 7.0 0.5 3.8 3.1 191 chr3L 18106211 intergenic CG13698 -,mRpS26 + chr3L 18106306 intergenic CG13698 -,mRpS26 + chr3L 18106402 intergenic mRpS26 +,CG13698 - chr3L_15_18105001 chr3L_18105001 RAL-843 2271 chr3L 18113265 18113282 chr3L 18113414 18113431 7 149 6.5 13.0 9.8 0.6 166 chr3L 18113265 intron,intron CG32195 +,CG7341 + chr3L 18113348 intron,intron CG32195 +,CG7341 + chr3L 18113431 intron,intron CG32195 +,CG7341 + chr3L_7_18110001 chr3L_18110001 RAL-843 2272 chr3L 18118169 18118236 chr3L 18118297 18118364 22 126 2.5 2.0 2.2 6.9 195 chr3L 18118169 3` UTR,intron CG32195 +,CG7341 + chr3L 18118266 3` UTR,intron CG32195 +,CG7341 + chr3L 18118364 3` UTR,intron CG32195 +,CG7341 + chr3L_22_18115001 chr3L_18115001 RAL-843 2273 chr3L 18119596 18119667 chr3L 18119758 18119815 20 158 0.0 11.5 5.8 2.9 219 chr3L 18119596 intron CG7341 + chr3L 18119706 intron CG7341 + chr3L 18119815 5` UTR CG7341 + chr3L_20_18115001 chr3L_18115001 RAL-843 2274 chr3L 18134052 18134118 chr3L 18134186 18134252 29 132 7.0 7.0 7.0 3.6 200 chr3L 18134052 intergenic not near genes chr3L 18134152 intergenic not near genes chr3L 18134252 intergenic not near genes chr3L_29_18130001 chr3L_18130001 RAL-843 2275 chr3L 18150268 18150335 chr3L 18150415 18150482 18 147 11.5 7.5 9.5 1.7 214 chr3L 18150268 intron CG7330 + chr3L 18150375 intron CG7330 + chr3L 18150482 intron CG7330 + chr3L_18_18150001 chr3L_18150001 RAL-843 2276 chr3L 18152682 18152753 chr3L 18152843 18152913 19 160 5.5 8.5 7.0 2.4 231 chr3L 18152682 intron CG7330 + chr3L 18152798 intron CG7330 + chr3L 18152913 intron CG7330 + chr3L_19_18150001 chr3L_18150001 RAL-843 2277 chr3L 18172642 18172704 chr3L 18172768 18172830 36 126 11.5 10.5 11.0 3.0 188 chr3L 18172642 intron W - chr3L 18172736 intron W - chr3L 18172830 intron W - chr3L_36_18170001 chr3L_18170001 RAL-843 2278 chr3L 18186584 18186619 chr3L 18186773 18186808 20 188 14.0 8.0 11.0 1.7 224 chr3L 18186584 intergenic not near genes chr3L 18186696 intergenic not near genes chr3L 18186808 intergenic not near genes chr3L_20_18185001 chr3L_18185001 RAL-843 2279 chr3L 18189550 18189585 chr3L 18190201 18190235 S-element 19 648 17.0 9.0 13.0 1.4 685 chr3L 18189550 intergenic not near genes chr3L 18189892 intergenic not near genes chr3L 18190235 intergenic not near genes chr3L_19_18185001 chr3L_18185001 RAL-843 2280 chr3L 18198930 18198931 chr3L 24821492 24821494 5 6622563 0.0 23.5 11.8 0.4 6622564 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_5_21510001 chr3L_21510001 RAL-843 2281 chr3L 18203556 18203627 chr3L 18203701 18203761 7 135 5.5 0.0 2.8 1.8 205 chr3L 18203556 exon CG7320 + chr3L 18203658 intergenic CG7320 + chr3L 18203761 intergenic CG7320 + chr3L_7_18200001 chr3L_18200001 RAL-843 2282 chr3L 18223113 18223188 chr3L 18223246 18223333 19 143 5.0 0.0 2.5 5.4 220 chr3L 18223113 intergenic not near genes chr3L 18223223 intergenic not near genes chr3L 18223333 intergenic not near genes chr3L_19_18220001 chr3L_18220001 RAL-843 2283 chr3L 18226617 18226632 chr3L 18226758 18226773 5 141 7.5 7.0 7.2 0.6 156 chr3L 18226617 intergenic not near genes chr3L 18226695 intergenic not near genes chr3L 18226773 intergenic not near genes chr3L_5_18225001 chr3L_18225001 RAL-843 2284 chr3L 18248904 18248977 chr3L 18249052 18249125 18 148 5.5 5.5 5.5 2.8 221 chr3L 18248904 intergenic not near genes chr3L 18249014 intergenic not near genes chr3L 18249125 intergenic not near genes chr3L_18_18245001 chr3L_18245001 RAL-843 2285 chr3L 18262422 18262489 chr3L 18262555 18262623 21 133 7.0 5.0 6.0 3.0 201 chr3L 18262422 intergenic not near genes chr3L 18262522 intergenic not near genes chr3L 18262623 intergenic not near genes chr3L_21_18260001 chr3L_18260001 RAL-843 2286 chr3L 18301304 18301372 chr3L 18301442 18301511 10 139 0.0 6.5 3.2 2.4 207 chr3L 18301304 intergenic CG13700 - chr3L 18301408 intergenic CG13700 - chr3L 18301511 intergenic CG13700 - chr3L_10_18300001 chr3L_18300001 RAL-843 2287 chr3L 18325717 18325733 chr3L 18325846 18325862 4 129 7.5 0.0 3.8 0.8 145 chr3L 18325717 intergenic not near genes chr3L 18325790 intergenic not near genes chr3L 18325862 intergenic not near genes chr3L_4_18325001 chr3L_18325001 RAL-843 2288 chr3L 18376031 18376111 chr3L 18376170 18376250 21 138 4.5 4.0 4.2 4.0 219 chr3L 18376031 intergenic not near genes chr3L 18376140 intergenic not near genes chr3L 18376250 intergenic not near genes chr3L_21_18375001 chr3L_18375001 RAL-843 2289 chr3L 18406088 18406154 chr3L 18406213 18406280 23 126 2.5 4.5 3.5 5.1 192 chr3L 18406088 intergenic not near genes chr3L 18406184 intergenic not near genes chr3L 18406280 intergenic not near genes chr3L_23_18405001 chr3L_18405001 RAL-843 2290 chr3L 18408697 18408755 chr3L 18408833 18408891 20 136 4.5 7.5 6.0 2.9 194 chr3L 18408697 intergenic not near genes chr3L 18408794 intergenic not near genes chr3L 18408891 intergenic not near genes chr3L_20_18405001 chr3L_18405001 RAL-843 2291 chr3L 18437233 18437291 chr3L 18437381 18437438 20 146 3.5 7.0 5.2 3.2 205 chr3L 18437233 intergenic not near genes chr3L 18437336 intergenic not near genes chr3L 18437438 intergenic not near genes chr3L_20_18435001 chr3L_18435001 RAL-843 2292 chr3L 18448588 18448619 chr3L 18448730 18448761 7 142 10.0 4.0 7.0 0.9 173 chr3L 18448588 intergenic not near genes chr3L 18448674 intergenic not near genes chr3L 18448761 intergenic not near genes chr3L_7_18445001 chr3L_18445001 RAL-843 2293 chr3L 18456228 18456303 chr3L 18456366 18456440 21 137 6.5 5.0 5.8 3.1 212 chr3L 18456228 intergenic CR44670 - chr3L 18456334 intergenic CR44670 - chr3L 18456440 3` UTR CR44670 - chr3L_21_18455001 chr3L_18455001 RAL-843 2294 chr3L 18464442 18464465 chr3L 18464578 18464582 7 133 17.0 8.5 12.8 0.5 140 chr3L 18464442 intergenic not near genes chr3L 18464512 intergenic not near genes chr3L 18464582 intergenic not near genes chr3L_7_18460001 chr3L_18460001 RAL-843 2295 chr3L 18464469 18464510 chr3L 18464576 18464646 16 127 6.5 7.5 7.0 2.0 177 chr3L 18464469 intergenic not near genes chr3L 18464558 intergenic not near genes chr3L 18464646 intergenic not near genes chr3L_16_18460001 chr3L_18460001 RAL-843 2296 chr3L 18479022 18479088 chr3L 18479173 18479212 9 139 6.5 5.5 6.0 1.3 190 chr3L 18479022 5` UTR CR44673 + chr3L 18479117 5` UTR CR44673 + chr3L 18479212 5` UTR CR44673 + chr3L_9_18475001 chr3L_18475001 RAL-843 2297 chr3L 18492419 18492495 chr3L 18492566 18492629 26 145 5.5 8.5 7.0 3.2 210 chr3L 18492419 intron AstC-R2 - chr3L 18492524 intron AstC-R2 - chr3L 18492629 intron AstC-R2 - chr3L_26_18490001 chr3L_18490001 RAL-843 2298 chr3L 18506099 18506143 chr3L 18509612 18509656 F-element 12 3513 9.0 9.5 9.2 1.2 3557 chr3L 18506099 intergenic not near genes chr3L 18507878 intergenic not near genes chr3L 18509656 intergenic not near genes chr3L_12_18505001 chr3L_18505001 RAL-843 2299 chr3L 18528585 18528652 chr3L 18537796 18537863 roo 30 9211 4.5 8.0 6.2 4.2 9278 chr3L 18528585 intergenic not near genes chr3L 18533224 intergenic not near genes chr3L 18537863 intergenic not near genes chr3L_30_18530001 chr3L_18530001 RAL-843 2300 chr3L 18581309 18581362 chr3L 18581435 18581488 15 126 9.5 10.5 10.0 1.4 179 chr3L 18581309 intergenic not near genes chr3L 18581398 intergenic not near genes chr3L 18581488 intergenic not near genes chr3L_15_18580001 chr3L_18580001 RAL-843 2301 chr3L 18585500 18585557 chr3L 18585626 18585683 14 124 7.5 6.5 7.0 1.8 183 chr3L 18585500 intergenic not near genes chr3L 18585592 intergenic not near genes chr3L 18585683 intergenic not near genes chr3L_14_18585001 chr3L_18585001 RAL-843 2302 chr3L 18590223 18590286 chr3L 18590355 18590396 26 129 5.5 8.5 7.0 3.2 173 chr3L 18590223 intergenic CG7271 + chr3L 18590310 intergenic CG7271 + chr3L 18590396 intergenic CG7271 + chr3L_26_18590001 chr3L_18590001 RAL-843 2303 chr3L 18593903 18593980 chr3L 18595933 18596008 Doc 17 2028 10.5 1.0 5.8 2.5 2105 chr3L 18593903 intergenic term - chr3L 18594956 intergenic not near genes chr3L 18596008 intergenic CR45389 + chr3L_17_18590001 chr3L_18590001 RAL-843 2304 chr3L 18638540 18638598 chr3L 18638684 18638742 20 144 8.5 6.0 7.2 2.4 202 chr3L 18638540 intron MYPT-75D + chr3L 18638641 intron MYPT-75D + chr3L 18638742 intron MYPT-75D + chr3L_20_18635001 chr3L_18635001 RAL-843 2305 chr3L 18658255 18658308 chr3L 18658381 18658434 13 126 10.5 11.5 11.0 1.1 179 chr3L 18658255 intron MYPT-75D + chr3L 18658344 intron MYPT-75D + chr3L 18658434 intron MYPT-75D + chr3L_13_18655001 chr3L_18655001 RAL-843 2306 chr3L 18688120 18688153 chr3L 18688271 18688284 12 143 17.0 16.5 16.8 0.7 164 chr3L 18688120 intergenic not near genes chr3L 18688202 intergenic not near genes chr3L 18688284 intergenic not near genes chr3L_12_18685001 chr3L_18685001 RAL-843 2307 chr3L 18710741 18710790 chr3L 18718741 18718790 Stalker2 23 8000 9.0 9.5 9.2 2.3 8049 chr3L 18710741 intergenic not near genes chr3L 18714766 intergenic not near genes chr3L 18718790 intergenic not near genes chr3L_23_18710001 chr3L_18710001 RAL-843 2308 chr3L 18721722 18721786 chr3L 18721863 18721927 17 141 7.5 7.0 7.2 2.1 205 chr3L 18721722 intergenic CG12477 - chr3L 18721824 intergenic CG12477 - chr3L 18721927 3` UTR CG12477 - chr3L_17_18720001 chr3L_18720001 RAL-843 2309 chr3L 18741949 18741973 chr3L 18742085 18742109 10 136 16.0 6.0 11.0 0.8 160 chr3L 18741949 intergenic not near genes chr3L 18742029 intergenic not near genes chr3L 18742109 intergenic not near genes chr3L_10_18740001 chr3L_18740001 RAL-843 2310 chr3L 18770606 18770674 chr3L 18770741 18770809 31 135 7.0 6.5 6.8 4.0 203 chr3L 18770606 intron ftz-f1 - chr3L 18770708 intron ftz-f1 - chr3L 18770809 intron ftz-f1 - chr3L_31_18770001 chr3L_18770001 RAL-843 2311 chr3L 18772369 18772431 chr3L 18781100 18781162 roo 30 8730 12.5 10.0 11.2 2.5 8793 chr3L 18772369 intron ftz-f1 - chr3L 18776766 intron ftz-f1 - chr3L 18781162 intron ftz-f1 - chr3L_30_18775001 chr3L_18775001 RAL-843 2312 chr3L 18792528 18792596 chr3L 18792660 18792728 32 132 10.0 13.0 11.5 2.6 200 chr3L 18792528 intron ftz-f1 - chr3L 18792628 intron ftz-f1 - chr3L 18792728 intron ftz-f1 - chr3L_32_18790001 chr3L_18790001 RAL-843 2313 chr3L 18810173 18810245 chr3L 18810301 18810373 33 128 9.5 10.5 10.0 3.0 200 chr3L 18810173 intron CG14073 - chr3L 18810273 intron CG14073 - chr3L 18810373 intron CG14073 - chr3L_33_18810001 chr3L_18810001 RAL-843 2314 chr3L 18833753 18833758 chr3L 18834950 18834972 1360 4 1210 19.5 11.5 15.5 0.2 1219 chr3L 18833753 intron Indy - chr3L 18834362 intron Indy - chr3L 18834972 intron Indy - chr3L_4_18830001 chr3L_18830001 RAL-843 2315 chr3L 18833760 18833806 chr3L 18834949 18834984 1360 30 1211 6.5 11.5 9.0 3.0 1224 chr3L 18833760 intron Indy - chr3L 18834372 intron Indy - chr3L 18834984 intron Indy - chr3L_30_18830001 chr3L_18830001 RAL-843 2316 chr3L 18838481 18838542 chr3L 18838611 18838672 12 130 8.5 0.0 4.2 2.3 191 chr3L 18838481 intron Indy - chr3L 18838576 intron Indy - chr3L 18838672 intron Indy - chr3L_12_18835001 chr3L_18835001 RAL-843 2317 chr3L 18839694 18839767 chr3L 18839827 18839890 34 133 10.5 8.0 9.2 3.3 196 chr3L 18839694 intron Indy - chr3L 18839792 intron Indy - chr3L 18839890 intron Indy - chr3L_34_18835001 chr3L_18835001 RAL-843 2318 chr3L 18840844 18840891 chr3L 18841035 18841082 17 191 3.0 12.0 7.5 2.0 238 chr3L 18840844 intron Indy - chr3L 18840963 intron Indy - chr3L 18841082 intron Indy - chr3L_17_18840001 chr3L_18840001 RAL-843 2319 chr3L 18885954 18886014 chr3L 18886080 18886138 20 125 0.5 7.5 4.0 4.0 184 chr3L 18885954 intron CG3961 - chr3L 18886046 intron CG3961 - chr3L 18886138 intron CG3961 - chr3L_20_18885001 chr3L_18885001 RAL-843 2320 chr3L 18887267 18887329 chr3L 18887423 18887485 24 156 6.0 10.5 8.2 2.6 218 chr3L 18887267 intron CG3961 - chr3L 18887376 intron CG3961 - chr3L 18887485 intron CG3961 - chr3L_24_18885001 chr3L_18885001 RAL-843 2321 chr3L 18969507 18969577 chr3L 18969626 18969703 27 125 7.5 7.0 7.2 3.3 196 chr3L 18969507 intergenic not near genes chr3L 18969605 intergenic not near genes chr3L 18969703 intergenic not near genes chr3L_27_18965001 chr3L_18965001 RAL-843 2322 chr3L 19008805 19008845 chr3L 19009193 19009233 jockey 18 388 7.5 11.0 9.2 1.8 428 chr3L 19008805 intron nkd - chr3L 19009019 intron nkd - chr3L 19009233 intron nkd - chr3L_18_19005001 chr3L_19005001 RAL-843 2323 chr3L 19008850 19008859 chr3L 19009181 19009247 jockey 7 378 6.0 7.5 6.8 0.9 397 chr3L 19008850 intron nkd - chr3L 19009048 intron nkd - chr3L 19009247 intron nkd - chr3L_7_19005001 chr3L_19005001 RAL-843 2324 chr3L 19115599 19115675 chr3L 19115827 19115827 BS 21 221 10.0 7.5 8.8 2.1 228 chr3L 19115599 intron CG14082 - chr3L 19115713 intron CG14082 - chr3L 19115827 intron CG14082 - chr3L_21_19115001 chr3L_19115001 RAL-843 2325 chr3L 19117002 19117011 chr3L 19124499 19124508 mdg1 6 7497 17.5 8.0 12.8 0.4 7506 chr3L 19117002 intron CG14082 - chr3L 19120755 intron CG14082 - chr3L 19124508 intron CG14082 - chr3L_6_19120001 chr3L_19120001 RAL-843 2326 chr3L 19117014 19117072 chr3L 19124491 19124569 mdg1 17 7488 8.5 7.5 8.0 1.9 7555 chr3L 19117014 intron CG14082 - chr3L 19120792 intron CG14082 - chr3L 19124569 intron CG14082 - chr3L_17_19120001 chr3L_19120001 RAL-843 2327 chr3L 19135569 19135631 chr3L 19135724 19135786 27 154 6.5 8.0 7.2 3.3 217 chr3L 19135569 intron CG14082 - chr3L 19135678 intron CG14082 - chr3L 19135786 intron CG14082 - chr3L_27_19135001 chr3L_19135001 RAL-843 2328 chr3L 19182334 19182408 chr3L 19182466 19182539 20 131 5.0 3.5 4.2 3.8 205 chr3L 19182334 intron fz2 - chr3L 19182436 intron fz2 - chr3L 19182539 intron fz2 - chr3L_20_19180001 chr3L_19180001 RAL-843 2329 chr3L 19182892 19182948 chr3L 19183039 19183085 20 142 10.5 5.0 7.8 2.3 193 chr3L 19182892 intron fz2 - chr3L 19182988 intron fz2 - chr3L 19183085 intron fz2 - chr3L_20_19180001 chr3L_19180001 RAL-843 2330 chr3L 19208012 19208092 chr3L 19209436 19209495 Doc 23 1420 7.5 3.0 5.2 3.7 1483 chr3L 19208012 intron fz2 - chr3L 19208754 intron fz2 - chr3L 19209495 intron fz2 - chr3L_23_19205001 chr3L_19205001 RAL-843 2331 chr3L 19220634 19220634 chr3L 22908066 22908067 7 3687432 35.5 42.5 39.0 0.2 3687433 chr3L 19220634 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_7_21060001 chr3L_21060001 RAL-843 2332 chr3L 19226833 19226910 chr3L 19226960 19227022 30 126 5.0 7.0 6.0 4.3 189 chr3L 19226833 intron fz2 - chr3L 19226928 intron fz2 - chr3L 19227022 intron fz2 - chr3L_30_19225001 chr3L_19225001 RAL-843 2333 chr3L 19269630 19269688 chr3L 19269832 19269890 24 201 11.5 8.0 9.8 2.2 260 chr3L 19269630 exon CG14085 + chr3L 19269760 intron CG14085 + chr3L 19269890 intron,exon CG14085 +,CG14088 - chr3L_24_19265001 chr3L_19265001 RAL-843 2334 chr3L 19398891 19398932 chr3L 19403656 19403699 F-element 17 4763 9.5 10.5 10.0 1.5 4808 chr3L 19398891 intron CG32206 - chr3L 19401295 intron CG32206 - chr3L 19403699 intron CG32206 - chr3L_17_19400001 chr3L_19400001 RAL-843 2335 chr3L 19404934 19404997 chr3L 19405061 19405107 26 126 7.5 11.0 9.2 2.5 173 chr3L 19404934 intron CG32206 - chr3L 19405020 intron CG32206 - chr3L 19405107 intron CG32206 - chr3L_26_19405001 chr3L_19405001 RAL-843 2336 chr3L 19439219 19439289 chr3L 19439358 19439425 19 138 4.5 10.5 7.5 2.2 206 chr3L 19439219 intergenic not near genes chr3L 19439322 intergenic not near genes chr3L 19439425 intergenic not near genes chr3L_19_19435001 chr3L_19435001 RAL-843 2337 chr3L 19452077 19452147 chr3L 19452293 19452333 23 213 8.0 6.0 7.0 2.9 256 chr3L 19452077 intergenic not near genes chr3L 19452205 intergenic not near genes chr3L 19452333 intergenic not near genes chr3L_23_19450001 chr3L_19450001 RAL-843 2338 chr3L 19488477 19488495 chr3L 19488609 19488627 5 132 4.0 10.0 7.0 0.6 150 chr3L 19488477 intergenic pncr009:3L -,CG32212 + chr3L 19488552 intergenic pncr009:3L -,CG32212 + chr3L 19488627 intergenic pncr009:3L -,CG32212 + chr3L_5_19485001 chr3L_19485001 RAL-843 2339 chr3L 19520098 19520141 chr3L 19520209 19520227 9 98 13.5 8.0 10.8 0.8 129 chr3L 19520098 exon Cpr76Bb + chr3L 19520162 exon Cpr76Bb + chr3L 19520227 exon Cpr76Bb + chr3L_9_19520001 chr3L_19520001 RAL-843 2340 chr3L 19527886 19527942 chr3L 19528010 19528071 21 129 12.5 6.0 9.2 2.1 185 chr3L 19527886 intergenic not near genes chr3L 19527978 intergenic not near genes chr3L 19528071 intergenic not near genes chr3L_21_19525001 chr3L_19525001 RAL-843 2341 chr3L 19544191 19544245 chr3L 19544317 19544371 4 122 14.5 9.0 11.8 0.3 180 chr3L 19544191 intergenic CG9279 -,l(3)76BDr - chr3L 19544281 intergenic l(3)76BDr -,CG9279 - chr3L 19544371 3` UTR l(3)76BDr - chr3L_4_19540001 chr3L_19540001 RAL-843 2342 chr3L 19636824 19636843 chr3L 19636976 19636995 11 152 20.5 21.0 20.8 0.5 171 chr3L 19636824 intergenic CG8786 - chr3L 19636910 intergenic CG8786 - chr3L 19636995 intergenic CG8786 - chr3L_11_19635001 chr3L_19635001 RAL-843 2343 chr3L 19664271 19664337 chr3L 19664406 19664472 27 135 10.5 12.0 11.2 2.2 201 chr3L 19664271 intergenic tey - chr3L 19664372 intergenic tey - chr3L 19664472 intergenic tey - chr3L_27_19660001 chr3L_19660001 RAL-843 2344 chr3L 19820260 19820319 chr3L 19827859 19827918 412 15 7598 5.5 12.5 9.0 1.5 7658 chr3L 19820260 intron Deaf1 + chr3L 19824089 intron Deaf1 + chr3L 19827918 intron Deaf1 + chr3L_15_19820001 chr3L_19820001 RAL-843 2345 chr3L 19848476 19848527 chr3L 19857717 19857768 roo 19 9239 8.5 12.5 10.5 1.7 9292 chr3L 19848476 intron Papss + chr3L 19853122 intron Papss + chr3L 19857768 intron Papss + chr3L_19_19850001 chr3L_19850001 RAL-843 2346 chr3L 19861782 19861796 chr3L 19863620 19863634 S-element 5 1838 18.0 5.5 11.8 0.4 1852 chr3L 19861782 5` UTR CR45433 + chr3L 19862708 intergenic not near genes chr3L 19863634 intergenic not near genes chr3L_5_19860001 chr3L_19860001 RAL-843 2347 chr3L 19861797 19861803 chr3L 19863615 19863641 S-element 8 1832 17.0 5.0 11.0 0.7 1844 chr3L 19861797 5` UTR CR45433 + chr3L 19862719 intergenic not near genes chr3L 19863641 intergenic not near genes chr3L_8_19860001 chr3L_19860001 RAL-843 2348 chr3L 19861805 19861848 chr3L 19863609 19863683 S-element 15 1833 9.5 4.0 6.8 1.9 1878 chr3L 19861805 5` UTR CR45433 + chr3L 19862744 intergenic not near genes chr3L 19863683 intergenic not near genes chr3L_15_19860001 chr3L_19860001 RAL-843 2349 chr3L 19940673 19940735 chr3L 19940813 19940875 22 139 2.5 6.0 4.2 4.2 202 chr3L 19940673 intron Ac76E + chr3L 19940774 intron Ac76E + chr3L 19940875 intron Ac76E + chr3L_22_19940001 chr3L_19940001 RAL-843 2350 chr3L 19961231 19961301 chr3L 19961492 19961562 30 259 6.5 10.0 8.2 3.3 331 chr3L 19961231 intron Ac76E + chr3L 19961396 intron Ac76E + chr3L 19961562 intron Ac76E + chr3L_30_19960001 chr3L_19960001 RAL-843 2351 chr3L 20056221 20056290 chr3L 20056361 20056430 23 140 5.5 9.5 7.5 2.7 209 chr3L 20056221 intergenic not near genes chr3L 20056326 intergenic not near genes chr3L 20056430 intergenic not near genes chr3L_23_20055001 chr3L_20055001 RAL-843 2352 chr3L 20083378 20083422 chr3L 20083523 20083545 13 139 18.5 19.5 19.0 0.7 167 chr3L 20083378 intron sNPF-R - chr3L 20083462 intron sNPF-R - chr3L 20083545 intron sNPF-R - chr3L_13_20080001 chr3L_20080001 RAL-843 2353 chr3L 20086744 20086819 chr3L 20086872 20086956 31 131 5.5 5.5 5.5 4.8 212 chr3L 20086744 intron sNPF-R - chr3L 20086850 intron sNPF-R - chr3L 20086956 intron sNPF-R - chr3L_31_20085001 chr3L_20085001 RAL-843 2354 chr3L 20096214 20096280 chr3L 20096372 20096438 27 157 7.0 11.0 9.0 2.7 224 chr3L 20096214 intergenic not near genes chr3L 20096326 intergenic not near genes chr3L 20096438 intergenic not near genes chr3L_27_20095001 chr3L_20095001 RAL-843 2355 chr3L 20113616 20113676 chr3L 20122923 20122983 roo 29 9307 10.0 7.5 8.8 3.0 9367 chr3L 20113616 intergenic not near genes chr3L 20118300 intergenic not near genes chr3L 20122983 intergenic not near genes chr3L_29_20115001 chr3L_20115001 RAL-843 2356 chr3L 20143042 20143104 chr3L 20143172 20143234 22 130 7.0 8.0 7.5 2.6 192 chr3L 20143042 intergenic not near genes chr3L 20143138 intergenic not near genes chr3L 20143234 intergenic not near genes chr3L_22_20140001 chr3L_20140001 RAL-843 2357 chr3L 20157918 20157993 chr3L 20158065 20158141 33 147 11.0 7.0 9.0 3.3 223 chr3L 20157918 intron CG42674 - chr3L 20158030 intron CG42674 - chr3L 20158141 intron CG42674 - chr3L_33_20155001 chr3L_20155001 RAL-843 2358 chr3L 20212561 20212585 chr3L 20218188 20218212 mdg3 8 5627 17.0 0.5 8.8 0.8 5651 chr3L 20212561 intergenic CG7017 - chr3L 20215386 intergenic not near genes chr3L 20218212 intergenic CG6933 - chr3L_8_20215001 chr3L_20215001 RAL-843 2359 chr3L 20218183 20218218 chr3L 20218349 20218384 11 166 0.0 13.0 6.5 1.5 201 chr3L 20218183 intergenic CG6933 - chr3L 20218284 intergenic CG6933 - chr3L 20218384 intergenic CG6933 - chr3L_11_20215001 chr3L_20215001 RAL-843 2360 chr3L 20233436 20233467 chr3L 20233588 20233620 14 152 5.0 16.0 10.5 1.2 184 chr3L 20233436 3` UTR CG17233 - chr3L 20233528 3` UTR CG17233 - chr3L 20233620 3` UTR CG17233 - chr3L_14_20230001 chr3L_20230001 RAL-843 2361 chr3L 20257289 20257356 chr3L 20258459 20258526 pogo 31 1170 11.5 10.5 11.0 2.6 1237 chr3L 20257289 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258526 intron rdgC + chr3L_31_20255001 chr3L_20255001 RAL-843 2362 chr3L 20349663 20349742 chr3L 20349797 20349876 33 129 8.0 12.5 10.2 2.9 213 chr3L 20349663 intron eRF1 + chr3L 20349770 intron eRF1 + chr3L 20349876 intron eRF1 + chr3L_33_20345001 chr3L_20345001 RAL-843 2363 chr3L 20409839 20409908 chr3L 20409975 20409995 16 121 6.0 10.0 8.0 1.8 156 chr3L 20409839 intron CG13248 - chr3L 20409917 intron CG13248 - chr3L 20409995 intron CG13248 - chr3L_16_20405001 chr3L_20405001 RAL-843 2364 chr3L 20462538 20462601 chr3L 20462669 20462732 31 131 8.5 9.0 8.8 3.2 194 chr3L 20462538 intron atk - chr3L 20462635 intron atk - chr3L 20462732 intron atk - chr3L_31_20460001 chr3L_20460001 RAL-843 2365 chr3L 20476714 20476774 chr3L 20484363 20484415 springer 33 7649 10.0 8.5 9.2 3.2 7701 chr3L 20476714 3` UTR isoQC + chr3L 20480564 intergenic not near genes chr3L 20484415 3` UTR ZnT77C - chr3L_33_20480001 chr3L_20480001 RAL-843 2366 chr3L 20487620 20487672 chr3L 20488121 20488171 INE-1 26 499 14.0 8.0 11.0 2.2 551 chr3L 20487620 intron ZnT77C - chr3L 20487896 intron ZnT77C - chr3L 20488171 exon ZnT77C - chr3L_26_20485001 chr3L_20485001 RAL-843 2367 chr3L 20525229 20525230 chr3L 24821492 24821493 5 4296264 22.0 23.5 22.8 0.2 4296264 chr3L 20525229 intron CG4825 - chr3L 22673361 intron CG14457 + chr3L 24821493 intergenic not near genes chr3L_5_22670001 chr3L_22670001 RAL-843 2368 chr3L 20590016 20590070 chr3L 20590605 20590659 412 12 581 12.0 6.0 9.0 1.2 643 chr3L 20590016 intergenic not near genes chr3L 20590338 intergenic not near genes chr3L 20590659 intergenic not near genes chr3L_12_20590001 chr3L_20590001 RAL-843 2369 chr3L 20590074 20590093 chr3L 20590602 20590610 412 9 555 7.5 5.5 6.5 1.2 536 chr3L 20590074 intergenic not near genes chr3L 20590342 intergenic not near genes chr3L 20590610 intergenic not near genes chr3L_9_20590001 chr3L_20590001 RAL-843 2370 chr3L 20594477 20594529 chr3L 20594607 20594613 11 118 14.5 12.5 13.5 0.8 136 chr3L 20594477 intergenic not near genes chr3L 20594545 intergenic not near genes chr3L 20594613 intergenic not near genes chr3L_11_20590001 chr3L_20590001 RAL-843 2371 chr3L 20624581 20624599 chr3L 20624717 20624735 8 136 11.0 10.5 10.8 0.7 154 chr3L 20624581 intergenic CR44684 - chr3L 20624658 intergenic CR44684 - chr3L 20624735 intergenic CR44684 - chr3L_8_20620001 chr3L_20620001 RAL-843 2372 chr3L 20624604 20624633 chr3L 20624713 20624769 15 134 6.0 10.0 8.0 1.7 165 chr3L 20624604 intergenic CR44684 - chr3L 20624686 intergenic CR44684 - chr3L 20624769 intergenic CR44684 - chr3L_15_20620001 chr3L_20620001 RAL-843 2373 chr3L 20666297 20666369 chr3L 20666424 20666480 30 126 8.0 5.0 6.5 4.0 183 chr3L 20666297 intergenic not near genes chr3L 20666388 intergenic not near genes chr3L 20666480 intergenic not near genes chr3L_30_20665001 chr3L_20665001 RAL-843 2374 chr3L 20710718 20710731 chr3L 20710845 20710858 9 127 15.0 11.0 13.0 0.6 140 chr3L 20710718 intergenic not near genes chr3L 20710788 intergenic not near genes chr3L 20710858 intergenic not near genes chr3L_9_20710001 chr3L_20710001 RAL-843 2375 chr3L 20710737 20710789 chr3L 20710837 20710911 12 124 8.0 10.5 9.2 1.2 174 chr3L 20710737 intergenic not near genes chr3L 20710824 intergenic not near genes chr3L 20710911 intergenic not near genes chr3L_12_20710001 chr3L_20710001 RAL-843 2376 chr3L 20821243 20821298 chr3L 20824762 20824817 NOF 22 3518 5.5 12.0 8.8 2.2 3574 chr3L 20821243 intron Pka-R1 + chr3L 20823030 intron Pka-R1 + chr3L 20824817 intron Pka-R1 + chr3L_22_20820001 chr3L_20820001 RAL-843 2377 chr3L 20849233 20849287 chr3L 20849362 20849416 19 129 7.0 9.5 8.2 2.1 183 chr3L 20849233 intron CG32432 - chr3L 20849324 intron CG32432 - chr3L 20849416 intron CG32432 - chr3L_19_20845001 chr3L_20845001 RAL-843 2378 chr3L 20931749 20931806 chr3L 20931887 20931943 11 137 7.5 1.5 4.5 2.0 194 chr3L 20931749 intron fng - chr3L 20931846 intron fng - chr3L 20931943 intron fng - chr3L_11_20930001 chr3L_20930001 RAL-843 2379 chr3L 21010321 21010393 chr3L 21010478 21010551 21 157 7.5 7.0 7.2 2.6 230 chr3L 21010321 intron skd - chr3L 21010436 intron skd - chr3L 21010551 intron skd - chr3L_21_21010001 chr3L_21010001 RAL-843 2380 chr3L 21014871 21014924 chr3L 21023399 21023448 Tirant 13 8518 9.5 9.5 9.5 1.2 8577 chr3L 21014871 intron skd - chr3L 21019160 intron skd - chr3L 21023448 intron skd - chr3L_13_21015001 chr3L_21015001 RAL-843 2381 chr3L 21014925 21014948 chr3L 21023396 21023439 Tirant 8 8499 4.5 9.0 6.8 1.0 8514 chr3L 21014925 intron skd - chr3L 21019182 intron skd - chr3L 21023439 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-843 2382 chr3L 21062416 21062479 chr3L 21062562 21062625 28 145 11.5 10.0 10.8 2.4 209 chr3L 21062416 intron siz + chr3L 21062520 intron siz + chr3L 21062625 intron siz + chr3L_28_21060001 chr3L_21060001 RAL-843 2383 chr3L 21082162 21082236 chr3L 21082290 21082347 27 126 7.5 9.5 8.5 2.8 185 chr3L 21082162 intron ko - chr3L 21082254 intron ko - chr3L 21082347 intron ko - chr3L_27_21080001 chr3L_21080001 RAL-843 2384 chr3L 21145271 21145290 chr3L 21145396 21145420 10 130 13.0 9.0 11.0 0.8 149 chr3L 21145271 intron Ac78C - chr3L 21145346 intron Ac78C - chr3L 21145420 intron Ac78C - chr3L_10_21145001 chr3L_21145001 RAL-843 2385 chr3L 21151822 21151880 chr3L 21156956 21157014 flea 30 5133 6.0 6.0 6.0 4.3 5192 chr3L 21151822 intron Ac78C - chr3L 21154418 intron Ac78C - chr3L 21157014 intron Ac78C - chr3L_30_21150001 chr3L_21150001 RAL-843 2386 chr3L 21160923 21160984 chr3L 21161069 21161118 34 143 10.0 6.5 8.2 3.7 195 chr3L 21160923 5` UTR Ac78C - chr3L 21161020 intron Ac78C - chr3L 21161118 intron Ac78C - chr3L_34_21160001 chr3L_21160001 RAL-843 2387 chr3L 21243722 21243746 chr3L 21251309 21251327 412 6 7587 7.5 7.0 7.2 0.7 7605 chr3L 21243722 intron Eip78C + chr3L 21247524 intron Eip78C + chr3L 21251327 intron Eip78C + chr3L_6_21245001 chr3L_21245001 RAL-843 2388 chr3L 21256489 21256524 chr3L 21256633 21256668 14 143 15.0 11.5 13.2 1.0 179 chr3L 21256489 intron Eip78C + chr3L 21256578 intron Eip78C + chr3L 21256668 intron Eip78C + chr3L_14_21255001 chr3L_21255001 RAL-843 2389 chr3L 21256526 21256558 chr3L 21256629 21256695 16 133 9.0 9.5 9.2 1.6 169 chr3L 21256526 intron Eip78C + chr3L 21256610 intron Eip78C + chr3L 21256695 intron Eip78C + chr3L_16_21255001 chr3L_21255001 RAL-843 2390 chr3L 21306103 21306174 chr3L 21315312 21315383 roo 24 9209 6.0 11.0 8.5 2.5 9280 chr3L 21306103 3` UTR CG7632 + chr3L 21310743 intron Pc - chr3L 21315383 3` UTR Pc - chr3L_24_21310001 chr3L_21310001 RAL-843 2391 chr3L 21319489 21319495 chr3L 21319629 21319635 4 140 17.5 12.0 14.8 0.3 146 chr3L 21319489 5` UTR Rab26 + chr3L 21319562 5` UTR Rab26 + chr3L 21319635 5` UTR Rab26 + chr3L_4_21315001 chr3L_21315001 RAL-843 2392 chr3L 21319500 21319553 chr3L 21319621 21319691 22 138 6.0 11.0 8.5 2.3 191 chr3L 21319500 5` UTR Rab26 + chr3L 21319596 5` UTR Rab26 + chr3L 21319691 5` UTR Rab26 + chr3L_22_21315001 chr3L_21315001 RAL-843 2393 chr3L 21361675 21361750 chr3L 21362679 21362754 G2 16 1003 8.5 9.0 8.8 1.6 1079 chr3L 21361675 intergenic CG32440 + chr3L 21362214 intergenic not near genes chr3L 21362754 intergenic not near genes chr3L_16_21360001 chr3L_21360001 RAL-843 2394 chr3L 21372677 21372743 chr3L 21379235 21379300 McClintock 9 6558 4.0 4.5 4.2 1.7 6623 chr3L 21372677 intergenic not near genes chr3L 21375988 intergenic not near genes chr3L 21379300 intergenic not near genes chr3L_9_21375001 chr3L_21375001 RAL-843 2395 chr3L 21406952 21407019 chr3L 21407081 21407148 19 126 11.0 10.0 10.5 1.7 196 chr3L 21406952 intron rgn + chr3L 21407050 intron rgn + chr3L 21407148 intron rgn + chr3L_19_21405001 chr3L_21405001 RAL-843 2396 chr3L 21415091 21415162 chr3L 21415227 21415295 26 133 4.5 10.5 7.5 3.1 204 chr3L 21415091 intron rgn + chr3L 21415193 intron rgn + chr3L 21415295 intron rgn + chr3L_26_21415001 chr3L_21415001 RAL-843 2397 chr3L 21415485 21415560 chr3L 21415613 21415663 35 124 8.5 7.0 7.8 4.0 178 chr3L 21415485 intron rgn + chr3L 21415574 intron rgn + chr3L 21415663 intron rgn + chr3L_35_21415001 chr3L_21415001 RAL-843 2398 chr3L 21417790 21417856 chr3L 21417921 21417986 17 128 7.0 7.5 7.2 2.1 196 chr3L 21417790 intron rgn + chr3L 21417888 intron rgn + chr3L 21417986 intron rgn + chr3L_17_21415001 chr3L_21415001 RAL-843 2399 chr3L 4341330 4341332 chr3L 21448026 21448026 4 17106695 35.0 41.0 38.0 0.1 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_4_12890001 chr3L_12890001 RAL-843 2400 chr3L 21576131 21576200 chr3L 21576264 21576286 13 126 4.5 15.5 10.0 1.2 155 chr3L 21576131 3` UTR CR43939 - chr3L 21576208 3` UTR CR43939 - chr3L 21576286 3` UTR CR43939 - chr3L_13_21575001 chr3L_21575001 RAL-843 2401 chr3L 21599732 21599809 chr3L 21599911 21599973 32 176 6.0 4.5 5.2 5.2 241 chr3L 21599732 intron TfAP-2 + chr3L 21599852 intron TfAP-2 + chr3L 21599973 intron TfAP-2 + chr3L_32_21595001 chr3L_21595001 RAL-843 2402 chr3L 21739301 21739366 chr3L 21739443 21739508 29 138 7.5 9.5 8.5 3.1 207 chr3L 21739301 intergenic CG14566 - chr3L 21739404 intergenic CG14566 - chr3L 21739508 3` UTR CG14566 - chr3L_29_21735001 chr3L_21735001 RAL-843 2403 chr3L 21766878 21766955 chr3L 21767209 21767254 39 327 5.0 11.0 8.0 4.3 376 chr3L 21766878 intron Syn1 - chr3L 21767066 intron Syn1 - chr3L 21767254 intron Syn1 - chr3L_39_21765001 chr3L_21765001 RAL-843 2404 chr3L 21769996 21770020 chr3L 21770133 21770142 7 134 16.0 13.0 14.5 0.5 146 chr3L 21769996 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770069 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770142 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L_7_21770001 chr3L_21770001 RAL-843 2405 chr3L 21770021 21770039 chr3L 21770132 21770176 12 131 10.0 13.0 11.5 1.0 155 chr3L 21770021 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770098 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770176 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L_12_21770001 chr3L_21770001 RAL-843 2406 chr3L 21785727 21785798 chr3L 21786100 21786170 26 370 5.0 8.0 6.5 3.5 443 chr3L 21785727 intergenic not near genes chr3L 21785948 intergenic not near genes chr3L 21786170 intergenic not near genes chr3L_26_21785001 chr3L_21785001 RAL-843 2407 chr3L 21809947 21809968 chr3L 21810072 21810093 9 129 25.0 20.5 22.8 0.4 146 chr3L 21809947 intron eg + chr3L 21810020 intron eg + chr3L 21810093 intron eg + chr3L_9_21810001 chr3L_21810001 RAL-843 2408 chr3L 21852207 21852278 chr3L 21852350 21852421 28 131 6.0 7.5 6.8 3.6 214 chr3L 21852207 intron mub + chr3L 21852314 intron mub + chr3L 21852421 intron mub + chr3L_28_21850001 chr3L_21850001 RAL-843 2409 chr3L 21905435 21905512 chr3L 21905587 21905664 39 143 7.5 5.5 6.5 5.2 229 chr3L 21905435 intron mub + chr3L 21905550 intron mub + chr3L 21905664 intron mub + chr3L_39_21905001 chr3L_21905001 RAL-843 2410 chr3L 21966434 21966452 chr3L 21966562 21966585 6 132 16.0 11.5 13.8 0.4 151 chr3L 21966434 intron CS-2 + chr3L 21966510 intron CS-2 + chr3L 21966585 intron CS-2 + chr3L_6_21965001 chr3L_21965001 RAL-843 2411 chr3L 21966453 21966499 chr3L 21966557 21966597 8 120 8.0 11.0 9.5 0.8 144 chr3L 21966453 intron CS-2 + chr3L 21966525 intron CS-2 + chr3L 21966597 intron CS-2 + chr3L_8_21965001 chr3L_21965001 RAL-843 2412 chr3L 21970761 21970811 chr3L 21970902 21970952 23 140 11.0 7.5 9.2 2.3 191 chr3L 21970761 intergenic not near genes chr3L 21970856 intergenic not near genes chr3L 21970952 intergenic not near genes chr3L_23_21970001 chr3L_21970001 RAL-843 2413 chr3L 21970814 21970825 chr3L 21970894 21970966 7 132 8.5 6.5 7.5 0.8 152 chr3L 21970814 intergenic not near genes chr3L 21970890 intergenic not near genes chr3L 21970966 intergenic not near genes chr3L_7_21970001 chr3L_21970001 RAL-843 2414 chr3L 21972521 21972593 chr3L 21972729 21972801 47 203 8.0 5.0 6.5 6.3 280 chr3L 21972521 intron CG7470 + chr3L 21972661 intron CG7470 + chr3L 21972801 intron CG7470 + chr3L_47_21970001 chr3L_21970001 RAL-843 2415 chr3L 22008804 22008812 chr3L 22008931 22008938 4 127 17.5 9.5 13.5 0.3 134 chr3L 22008804 intergenic not near genes chr3L 22008871 intergenic not near genes chr3L 22008938 intergenic not near genes chr3L_4_22005001 chr3L_22005001 RAL-843 2416 chr3L 22008813 22008824 chr3L 22008927 22008951 4 124 14.5 9.5 12.0 0.3 138 chr3L 22008813 intergenic not near genes chr3L 22008882 intergenic not near genes chr3L 22008951 intergenic not near genes chr3L_4_22005001 chr3L_22005001 RAL-843 2417 chr3L 22008825 22008870 chr3L 22008924 22008990 15 120 6.0 10.0 8.0 1.7 165 chr3L 22008825 intergenic not near genes chr3L 22008908 intergenic not near genes chr3L 22008990 intergenic not near genes chr3L_15_22005001 chr3L_22005001 RAL-843 2418 chr3L 22010586 22010657 chr3L 22010779 22010795 29 197 4.5 7.0 5.8 4.3 209 chr3L 22010586 intergenic not near genes chr3L 22010690 intergenic not near genes chr3L 22010795 intergenic not near genes chr3L_29_22010001 chr3L_22010001 RAL-843 2419 chr3L 22016816 22016854 chr3L 22017007 22017045 18 191 1.0 18.5 9.8 1.7 229 chr3L 22016816 intergenic not near genes chr3L 22016930 intergenic not near genes chr3L 22017045 intergenic not near genes chr3L_18_22015001 chr3L_22015001 RAL-843 2420 chr3L 22023174 22023244 chr3L 22023316 22023335 24 140 5.0 5.5 5.2 3.9 161 chr3L 22023174 intergenic not near genes chr3L 22023254 intergenic not near genes chr3L 22023335 intergenic not near genes chr3L_24_22020001 chr3L_22020001 RAL-843 2421 chr3L 22099633 22099695 chr3L 22105869 22105931 3S18 24 6234 11.5 7.5 9.5 2.3 6298 chr3L 22099633 intergenic not near genes chr3L 22102782 intergenic not near genes chr3L 22105931 intergenic not near genes chr3L_24_22100001 chr3L_22100001 RAL-843 2422 chr3L 22169408 22169481 chr3L 22169551 22169624 21 141 6.0 8.0 7.0 2.6 216 chr3L 22169408 intron olf413 + chr3L 22169516 intron olf413 + chr3L 22169624 intron olf413 + chr3L_21_22165001 chr3L_22165001 RAL-843 2423 chr3L 22312243 22312311 chr3L 22312717 22312753 14 466 5.5 9.0 7.2 1.7 510 chr3L 22312243 intron Ten-m - chr3L 22312498 intron Ten-m - chr3L 22312753 intron Ten-m - chr3L_14_22310001 chr3L_22310001 RAL-843 2424 chr3L 22314836 22314900 chr3L 22315100 22315164 12 264 5.5 2.0 3.8 2.5 328 chr3L 22314836 intron Ten-m - chr3L 22315000 intron Ten-m - chr3L 22315164 intron Ten-m - chr3L_12_22315001 chr3L_22315001 RAL-843 2425 chr3L 22411345 22411388 chr3L 22411449 22411512 22 112 5.5 10.5 8.0 2.4 167 chr3L 22411345 intergenic not near genes chr3L 22411428 intergenic not near genes chr3L 22411512 intergenic not near genes chr3L_22_22410001 chr3L_22410001 RAL-843 2426 chr3L 22477026 22477084 chr3L 22477167 22477223 15 138 2.5 11.0 6.8 1.9 197 chr3L 22477026 intergenic not near genes chr3L 22477124 intergenic not near genes chr3L 22477223 intergenic not near genes chr3L_15_22475001 chr3L_22475001 RAL-843 2427 chr3L 22487078 22487146 chr3L 22487222 22487290 34 142 15.0 9.0 12.0 2.6 212 chr3L 22487078 intergenic not near genes chr3L 22487184 intergenic not near genes chr3L 22487290 intergenic not near genes chr3L_34_22485001 chr3L_22485001 RAL-843 2428 chr3L 22512965 22513040 chr3L 22513102 22513177 23 136 5.0 4.5 4.8 4.0 212 chr3L 22512965 intergenic not near genes chr3L 22513071 intergenic not near genes chr3L 22513177 intergenic not near genes chr3L_23_22510001 chr3L_22510001 RAL-843 2429 chr3L 22555724 22555792 chr3L 22563244 22563286 blood 25 7514 9.0 6.5 7.8 2.8 7562 chr3L 22555724 intergenic not near genes chr3L 22559505 intergenic not near genes chr3L 22563286 intergenic not near genes chr3L_25_22555001 chr3L_22555001 RAL-843 2430 chr3L 22577592 22577598 chr3L 22582430 22582434 Doc 4 4838 18.0 14.0 16.0 0.2 4842 chr3L 22577592 intergenic not near genes chr3L 22580013 intergenic not near genes chr3L 22582434 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-843 2431 chr3L 22577601 22577639 chr3L 22582408 22582477 Doc 12 4828 9.5 8.5 9.0 1.2 4876 chr3L 22577601 intergenic not near genes chr3L 22580039 intergenic not near genes chr3L 22582477 3` UTR CG14459 - chr3L_12_22580001 chr3L_22580001 RAL-843 2432 chr3L 22603868 22603944 chr3L 22604000 22604076 31 127 5.0 8.5 6.8 4.0 208 chr3L 22603868 intron CG14459 - chr3L 22603972 intron CG14459 - chr3L 22604076 intron CG14459 - chr3L_31_22600001 chr3L_22600001 RAL-843 2433 chr3L 22617149 22617200 chr3L 22624650 22624702 blood 30 7502 10.0 8.5 9.2 2.9 7553 chr3L 22617149 intron CG14459 - chr3L 22620926 intron CG14459 - chr3L 22624702 intron CG14459 - chr3L_30_22620001 chr3L_22620001 RAL-843 2434 chr3L 22617201 22617210 chr3L 22624640 22624711 blood 4 7485 8.0 6.0 7.0 0.5 7510 chr3L 22617201 intron CG14459 - chr3L 22620956 intron CG14459 - chr3L 22624711 intron CG14459 - chr3L_4_22620001 chr3L_22620001 RAL-843 2435 chr3L 22675565 22675636 chr3L 22675714 22675780 16 146 12.0 5.0 8.5 1.7 215 chr3L 22675565 intron CG14457 + chr3L 22675672 intron CG14457 + chr3L 22675780 intron CG14457 + chr3L_16_22675001 chr3L_22675001 RAL-843 2436 chr3L 22761349 22761375 chr3L 22766833 22766859 Ivk 10 5484 1.5 14.0 7.8 1.1 5510 chr3L 22761349 intron SPoCk + chr3L 22764104 intron SPoCk + chr3L 22766859 intron SPoCk + chr3L_10_22760001 chr3L_22760001 RAL-843 2437 chr3L 22761378 22761404 chr3L 22766832 22766882 Ivk 14 5481 1.0 13.5 7.2 1.7 5504 chr3L 22761378 intron SPoCk + chr3L 22764130 intron SPoCk + chr3L 22766882 intron SPoCk + chr3L_14_22760001 chr3L_22760001 RAL-843 2438 chr3L 22786068 22786134 chr3L 22788455 22788521 26 2387 47.5 57.5 52.5 0.5 2453 chr3L 22786068 3` UTR SPoCk + chr3L 22787294 3` UTR SPoCk + chr3L 22788521 exon CG14448 + chr3L_26_22785001 chr3L_22785001 RAL-843 2439 chr3L 22853422 22853714 chr3L 22853553 22853850 70 135 6.5 11.5 9.0 7.0 428 chr3L 22853422 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853850 5` UTR CR43426 + chr3L_70_22850001 chr3L_22850001 RAL-843 2440 chr3L 22865947 22866004 chr3L 22867130 22867187 Doc 20 1183 12.0 11.0 11.5 1.6 1240 chr3L 22865947 exon CG33170 + chr3L 22866567 intron CG33170 + chr3L 22867187 intron CG33170 + chr3L_20_22865001 chr3L_22865001 RAL-843 2441 chr3L 22901112 22901175 chr3L 22903934 22903997 17 2824 31.5 71.0 51.2 0.3 2885 chr3L 22901112 intergenic not near genes chr3L 22902554 exon BoYb + chr3L 22903997 exon BoYb + chr3L_17_22900001 chr3L_22900001 RAL-843 2442 chr3L 9102762 9102824 chr3L 22908066 22908066 9 13805259 55.5 42.5 49.0 0.2 13805304 chr3L 9102762 exon bol - chr3L 16005414 exon mRpS31 + chr3L 22908066 intergenic not near genes chr3L_9_16005001 chr3L_16005001 RAL-843 2443 chr3L 19220633 19220636 chr3L 22908066 22908066 4 3687431 35.5 42.5 39.0 0.1 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_4_21060001 chr3L_21060001 RAL-843 2444 chr3L 9102760 9102820 chr3L 22908067 22908067 4 13805278 53.5 42.5 48.0 0.1 13805307 chr3L 9102760 exon bol - chr3L 16005414 exon mRpS31 + chr3L 22908067 intergenic not near genes chr3L_4_16005001 chr3L_16005001 RAL-843 2445 chr3L 22908979 22909047 chr3L 22909120 22909177 41 138 8.5 10.5 9.5 3.9 198 chr3L 22908979 intergenic CR45661 + chr3L 22909078 intergenic CR45661 + chr3L 22909177 intergenic CR45661 + chr3L_41_22905001 chr3L_22905001 RAL-843 2446 chr3L 22989820 22989873 chr3L 22996844 22996897 297 18 7024 13.0 9.0 11.0 1.5 7077 chr3L 22989820 intergenic not near genes chr3L 22993358 intergenic not near genes chr3L 22996897 intergenic not near genes chr3L_18_22990001 chr3L_22990001 RAL-843 2447 chr3L 23109950 23109962 chr3L 23111497 23111504 4 1548 22.0 38.5 30.2 0.1 1554 chr3L 23109950 intergenic not near genes chr3L 23110727 intergenic not near genes chr3L 23111504 intergenic not near genes chr3L_4_23110001 chr3L_23110001 RAL-843 2448 chr3L 23109964 23110007 chr3L 23111485 23111540 14 1535 26.0 39.5 32.8 0.4 1576 chr3L 23109964 intergenic not near genes chr3L 23110752 intergenic not near genes chr3L 23111540 intergenic not near genes chr3L_14_23110001 chr3L_23110001 RAL-843 2449 chr3L 23110021 23110045 chr3L 23111525 23111581 16 1504 25.0 39.0 32.0 0.5 1560 chr3L 23110021 intergenic not near genes chr3L 23110801 intergenic not near genes chr3L 23111581 intergenic not near genes chr3L_16_23110001 chr3L_23110001 RAL-843 2450 chr3L 23182230 23182256 chr3L 23182378 23182420 9 155 17.5 9.5 13.5 0.6 190 chr3L 23182230 intron CG34031 + chr3L 23182325 intron CG34031 + chr3L 23182420 intron CG34031 + chr3L_9_23180001 chr3L_23180001 RAL-843 2451 chr3L 23182259 23182292 chr3L 23182374 23182420 30 154 9.0 9.5 9.2 2.9 161 chr3L 23182259 intron CG34031 + chr3L 23182340 intron CG34031 + chr3L 23182420 intron CG34031 + chr3L_30_23180001 chr3L_23180001 RAL-843 2452 chr3L 23205407 23205446 chr3L 23205684 23205715 14 278 11.0 6.5 8.8 1.4 308 chr3L 23205407 intergenic not near genes chr3L 23205561 intergenic not near genes chr3L 23205715 intergenic not near genes chr3L_14_23205001 chr3L_23205001 RAL-843 2453 chr3L 23470377 23470397 chr3L 23470659 23470701 9 297 7.5 18.0 12.8 0.7 324 chr3L 23470377 intergenic not near genes chr3L 23470539 intergenic not near genes chr3L 23470701 intergenic not near genes chr3L_9_23470001 chr3L_23470001 RAL-843 2454 chr3L 23715311 23715380 chr3L 23715443 23715512 37 131 9.5 7.0 8.2 4.0 201 chr3L 23715311 intron CG17454 + chr3L 23715412 intron CG17454 + chr3L 23715512 intron CG17454 + chr3L_37_23715001 chr3L_23715001 RAL-843 2455 chr3L 23750935 23751007 chr3L 23751098 23751158 8 156 61.5 52.0 56.8 0.1 223 chr3L 23750935 intergenic not near genes chr3L 23751046 intergenic not near genes chr3L 23751158 intergenic not near genes chr3L_8_23750001 chr3L_23750001 RAL-843 2456 chr3L 23772890 23772899 chr3L 23773026 23773035 9 136 26.5 12.5 19.5 0.4 145 chr3L 23772890 intergenic not near genes chr3L 23772962 intergenic not near genes chr3L 23773035 intergenic not near genes chr3L_9_23770001 chr3L_23770001 RAL-843 2457 chr3L 23823985 23824013 chr3L 23824448 23824476 4 463 9.0 6.0 7.5 0.5 491 chr3L 23823985 intergenic not near genes chr3L 23824230 intergenic not near genes chr3L 23824476 intergenic not near genes chr3L_4_23820001 chr3L_23820001 RAL-843 2458 chr3L 23875482 23875552 chr3L 23875613 23875670 19 126 11.0 11.5 11.2 1.6 188 chr3L 23875482 intron CG40470 - chr3L 23875576 intron CG40470 - chr3L 23875670 intron CG40470 - chr3L_19_23875001 chr3L_23875001 RAL-843 2459 chr3L 24012369 24012424 chr3L 24020760 24020815 roo 21 8391 10.0 10.5 10.2 1.9 8446 chr3L 24012369 intergenic not near genes chr3L 24016592 intergenic not near genes chr3L 24020815 intergenic not near genes chr3L_21_24015001 chr3L_24015001 RAL-843 2460 chr3L 24123424 24123499 chr3L 24123557 24123627 17 129 40.0 34.5 37.2 0.4 203 chr3L 24123424 intron Snap25 + chr3L 24123526 intron Snap25 + chr3L 24123627 intron Snap25 + chr3L_17_24120001 chr3L_24120001 RAL-843 2461 chr3L 24168762 24168814 chr3L 24176120 24176192 ZAM 19 7360 6.0 9.0 7.5 2.2 7430 chr3L 24168762 intron Snap25 + chr3L 24172477 intron Snap25 + chr3L 24176192 intron Snap25 + chr3L_19_24170001 chr3L_24170001 RAL-843 2462 chr3L 24791852 24791886 chr3L 24796681 24796715 Doc 15 4829 10.0 7.0 8.5 1.6 4863 chr3L 24791852 intergenic not near genes chr3L 24794284 intergenic not near genes chr3L 24796715 intergenic not near genes chr3L_15_24790001 chr3L_24790001 RAL-843 2463 chr3L 18198931 18198931 chr3L 24821493 24821493 4 6622562 0.0 23.5 11.8 0.3 6622562 chr3L 18198931 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_4_21510001 chr3L_21510001 RAL-843 2464 chr3L 25190044 25190064 chr3L 25191244 25191264 1360 4 1200 38.5 49.0 43.8 0.1 1220 chr3L 25190044 intergenic not near genes chr3L 25190654 intergenic not near genes chr3L 25191264 intergenic not near genes chr3L_4_25190001 chr3L_25190001 RAL-843 2465 chr3L 25331590 25331652 chr3L 25331731 25331782 16 133 6.0 4.5 5.2 2.6 192 chr3L 25331590 intergenic not near genes chr3L 25331686 intergenic not near genes chr3L 25331782 intergenic not near genes chr3L_16_25330001 chr3L_25330001 RAL-843 2466 chr3L 26010788 26010848 chr3L 26010922 26010967 18 133 5.5 10.0 7.8 2.0 179 chr3L 26010788 intron CG40178 - chr3L 26010878 intron CG40178 - chr3L 26010967 intron CG40178 - chr3L_18_26010001 chr3L_26010001 RAL-843 2467 chr3R 2534100 2534110 chr3R 2541719 2541729 4 7619 24.5 19.5 22.0 0.2 7629 chr3R 2534100 intergenic not near genes chr3R 2537914 intergenic not near genes chr3R 2541729 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-843 2468 chr3R 2534125 2534156 chr3R 2541711 2541770 5 7606 19.0 20.0 19.5 0.2 7645 chr3R 2534125 intergenic not near genes chr3R 2537948 intergenic not near genes chr3R 2541770 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-843 2469 chr3R 2556890 2556954 chr3R 2557573 2557637 15 688 35.0 36.0 35.5 0.4 747 chr3R 2556890 intron CG41056 - chr3R 2557264 intron CG41056 - chr3R 2557637 intron CG41056 - chr3R_15_2555001 chr3R_2555001 RAL-843 2470 chr3R 4063764 4063817 chr3R 4069093 4069096 8 5321 12.5 25.5 19.0 0.4 5332 chr3R 4063764 intergenic not near genes chr3R 4066430 intergenic not near genes chr3R 4069096 intergenic not near genes chr3R_8_4065001 chr3R_4065001 RAL-843 2471 chr3R 4105003 4105051 chr3R 4110256 4110305 copia 6 5254 5.5 5.0 5.2 1.0 5302 chr3R 4105003 intergenic not near genes chr3R 4107654 intergenic not near genes chr3R 4110305 intergenic not near genes chr3R_6_4105001 chr3R_4105001 RAL-843 2472 chr3R 4132858 4132929 chr3R 4133062 4133133 13 204 2.0 4.5 3.2 3.1 275 chr3R 4132858 intron Gfat1 + chr3R 4132996 intron Gfat1 + chr3R 4133133 intron Gfat1 + chr3R_13_4130001 chr3R_4130001 RAL-843 2473 chr3R 4161490 4161569 chr3R 4161617 4161695 25 120 7.5 8.0 7.8 2.8 205 chr3R 4161490 3` UTR CG40198 - chr3R 4161592 3` UTR CG40198 - chr3R 4161695 exon CG40198 - chr3R_25_4160001 chr3R_4160001 RAL-843 2474 chr3R 4206029 4206092 chr3R 4211653 4211717 mdg3 25 5625 9.5 8.0 8.8 2.6 5688 chr3R 4206029 intron CG14636 - chr3R 4208873 intron CG14636 - chr3R 4211717 intron CG14636 - chr3R_25_4205001 chr3R_4205001 RAL-843 2475 chr3R 4366713 4366781 chr3R 4375146 4375214 roo 25 8433 11.0 11.0 11.0 2.1 8501 chr3R 4366713 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375214 5` UTR CR44922 + chr3R_25_4370001 chr3R_4370001 RAL-843 2476 chr3R 4408372 4408384 chr3R 4412726 4412738 Juan 6 4354 23.0 13.5 18.2 0.3 4366 chr3R 4408372 intron CG32944 - chr3R 4410555 intron CG32944 - chr3R 4412738 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-843 2477 chr3R 4408385 4408430 chr3R 4412724 4412784 Juan 18 4352 10.0 13.5 11.8 1.4 4399 chr3R 4408385 intron CG32944 - chr3R 4410584 intron CG32944 - chr3R 4412784 intron CG32944 - chr3R_18_4410001 chr3R_4410001 RAL-843 2478 chr3R 4599257 4599267 chr3R 4599391 4599400 4 134 20.0 6.5 13.2 0.3 143 chr3R 4599257 intron CR44317 - chr3R 4599328 intron CR44317 - chr3R 4599400 intron CR44317 - chr3R_4_4595001 chr3R_4595001 RAL-843 2479 chr3R 4599269 4599330 chr3R 4599387 4599464 25 132 7.5 6.0 6.8 3.2 195 chr3R 4599269 intron CR44317 - chr3R 4599366 intron CR44317 - chr3R 4599464 intron CR44317 - chr3R_25_4595001 chr3R_4595001 RAL-843 2480 chr3R 4682732 4682783 chr3R 4682830 4682911 25 121 9.5 9.0 9.2 2.5 179 chr3R 4682732 intron CG43427 + chr3R 4682822 intron CG43427 + chr3R 4682911 intron CG43427 + chr3R_25_4680001 chr3R_4680001 RAL-843 2481 chr3R 4753203 4753258 chr3R 4757556 4757604 F-element 28 4349 14.5 16.5 15.5 1.7 4401 chr3R 4753203 intron,intron atms +,CG44098 - chr3R 4755404 intron,intron atms +,CG44098 - chr3R 4757604 intron,exon atms +,CG44098 - chr3R_28_4755001 chr3R_4755001 RAL-843 2482 chr3R 4769117 4769135 chr3R 4769242 4769263 10 127 20.5 11.5 16.0 0.6 146 chr3R 4769117 intron,intron atms +,CG44098 - chr3R 4769190 intron,intron atms +,CG44098 - chr3R 4769263 intron,intron atms +,CG44098 - chr3R_10_4765001 chr3R_4765001 RAL-843 2483 chr3R 4769137 4769183 chr3R 4769236 4769311 19 126 10.0 11.5 10.8 1.6 174 chr3R 4769137 intron,intron atms +,CG44098 - chr3R 4769224 intron,intron atms +,CG44098 - chr3R 4769311 intron,intron atms +,CG44098 - chr3R_19_4765001 chr3R_4765001 RAL-843 2484 chr3R 4861525 4861596 chr3R 4861650 4861707 38 121 11.0 12.5 11.8 3.0 182 chr3R 4861525 intron opa + chr3R 4861616 intron opa + chr3R 4861707 intron opa + chr3R_38_4860001 chr3R_4860001 RAL-843 2485 chr3R 4887451 4887508 chr3R 4894858 4894928 rover 15 7417 6.0 6.5 6.2 2.1 7477 chr3R 4887451 intergenic not near genes chr3R 4891190 intergenic not near genes chr3R 4894928 intergenic not near genes chr3R_15_4890001 chr3R_4890001 RAL-843 2486 chr3R 4896251 4896317 chr3R 4896394 4896460 23 143 7.0 5.0 6.0 3.3 209 chr3R 4896251 intergenic CR45580 + chr3R 4896356 intergenic CR45580 + chr3R 4896460 5` UTR CR45580 + chr3R_23_4895001 chr3R_4895001 RAL-843 2487 chr3R 4948330 4948392 chr3R 4949002 4949064 22 671 33.0 22.0 27.5 0.8 734 chr3R 4948330 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948697 intergenic UbcD6 - chr3R 4949064 3` UTR UbcD6 - chr3R_22_4945001 chr3R_4945001 RAL-843 2488 chr3R 4965960 4966033 chr3R 4966102 4966150 26 141 2.0 10.5 6.2 3.6 190 chr3R 4965960 intron CG1124 + chr3R 4966055 intron CG1124 + chr3R 4966150 intron CG1124 + chr3R_26_4965001 chr3R_4965001 RAL-843 2489 chr3R 4981384 4981436 chr3R 4981491 4981492 10 99 7.5 6.5 7.0 1.2 108 chr3R 4981384 intergenic not near genes chr3R 4981438 intergenic not near genes chr3R 4981492 intergenic not near genes chr3R_10_4980001 chr3R_4980001 RAL-843 2490 chr3R 5045802 5045876 chr3R 5052953 5053028 HMS-Beagle 25 7152 9.5 6.0 7.8 2.8 7226 chr3R 5045802 3` UTR CR43635 - chr3R 5049415 intergenic not near genes chr3R 5053028 intergenic CR45588 - chr3R_25_5045001 chr3R_5045001 RAL-843 2491 chr3R 5067943 5068000 chr3R 5073510 5073567 mdg3 30 5567 11.0 13.5 12.2 2.3 5624 chr3R 5067943 intergenic not near genes chr3R 5070755 intergenic not near genes chr3R 5073567 intergenic not near genes chr3R_30_5070001 chr3R_5070001 RAL-843 2492 chr3R 5105534 5105579 chr3R 5105631 5105686 17 93 11.0 5.0 8.0 1.9 152 chr3R 5105534 intergenic not near genes chr3R 5105610 intergenic not near genes chr3R 5105686 intergenic not near genes chr3R_17_5105001 chr3R_5105001 RAL-843 2493 chr3R 5191366 5191384 chr3R 5191592 5191622 11 231 38.5 64.0 51.2 0.2 256 chr3R 5191366 intron cno - chr3R 5191494 intron cno - chr3R 5191622 intron cno - chr3R_11_5190001 chr3R_5190001 RAL-843 2494 chr3R 5191364 5191447 chr3R 5191623 5191673 24 233 57.5 53.0 55.2 0.4 309 chr3R 5191364 intron cno - chr3R 5191518 intron cno - chr3R 5191673 intron cno - chr3R_24_5190001 chr3R_5190001 RAL-843 2495 chr3R 5205105 5205135 chr3R 5205247 5205277 9 142 13.5 11.0 12.2 0.7 172 chr3R 5205105 intron cno - chr3R 5205191 intron cno - chr3R 5205277 intron cno - chr3R_9_5205001 chr3R_5205001 RAL-843 2496 chr3R 5338352 5338426 chr3R 5343579 5343617 Rt1c 34 5225 11.0 10.5 10.8 2.9 5265 chr3R 5338352 intron mtd - chr3R 5340984 intron mtd - chr3R 5343617 intron mtd - chr3R_34_5340001 chr3R_5340001 RAL-843 2497 chr3R 5347572 5347646 chr3R 5347698 5347752 35 125 12.0 8.5 10.2 3.1 180 chr3R 5347572 intron mtd - chr3R 5347662 intron mtd - chr3R 5347752 intron mtd - chr3R_35_5345001 chr3R_5345001 RAL-843 2498 chr3R 5351907 5351920 chr3R 5352853 5352866 6 946 45.0 69.5 57.2 0.1 959 chr3R 5351907 intergenic not near genes chr3R 5352386 intergenic not near genes chr3R 5352866 intergenic not near genes chr3R_6_5350001 chr3R_5350001 RAL-843 2499 chr3R 5351904 5351983 chr3R 5352867 5352929 31 948 53.0 68.5 60.8 0.5 1025 chr3R 5351904 intergenic not near genes chr3R 5352416 intergenic not near genes chr3R 5352929 intergenic not near genes chr3R_31_5350001 chr3R_5350001 RAL-843 2500 chr3R 5385933 5386000 chr3R 5386149 5386221 24 219 10.5 10.0 10.2 2.1 288 chr3R 5385933 intron kkv - chr3R 5386077 intron kkv - chr3R 5386221 intron kkv - chr3R_24_5385001 chr3R_5385001 RAL-843 2501 chr3R 5445931 5445980 chr3R 5452430 5452490 Burdock 18 6509 13.0 10.5 11.8 1.4 6559 chr3R 5445931 intron CG14669 + chr3R 5449210 intron CG14669 + chr3R 5452490 intron CG14669 + chr3R_18_5445001 chr3R_5445001 RAL-843 2502 chr3R 5463847 5463924 chr3R 5464038 5464069 38 184 8.5 9.5 9.0 3.8 222 chr3R 5463847 intron PEK - chr3R 5463958 intron PEK - chr3R 5464069 intron PEK - chr3R_38_5460001 chr3R_5460001 RAL-843 2503 chr3R 5515091 5515165 chr3R 5515218 5515254 30 123 9.0 6.0 7.5 3.5 163 chr3R 5515091 intron Nmdar1 - chr3R 5515172 intron Nmdar1 - chr3R 5515254 intron Nmdar1 - chr3R_30_5515001 chr3R_5515001 RAL-843 2504 chr3R 5627104 5627165 chr3R 5627565 5627621 24 459 12.0 10.0 11.0 2.0 517 chr3R 5627104 intergenic not near genes chr3R 5627362 intergenic CG31551 + chr3R 5627621 intergenic CG31551 + chr3R_24_5625001 chr3R_5625001 RAL-843 2505 chr3R 5726052 5726117 chr3R 5726264 5726329 31 212 7.5 9.0 8.2 3.4 277 chr3R 5726052 intergenic not near genes chr3R 5726190 intergenic not near genes chr3R 5726329 intergenic not near genes chr3R_31_5725001 chr3R_5725001 RAL-843 2506 chr3R 5745977 5746038 chr3R 5746268 5746327 pogo 18 291 8.5 13.0 10.8 1.5 350 chr3R 5745977 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746327 3` UTR Madm + chr3R_18_5745001 chr3R_5745001 RAL-843 2507 chr3R 5746971 5747036 chr3R 5753212 5753277 diver 18 6241 5.5 6.0 5.8 2.6 6306 chr3R 5746971 intergenic Madm + chr3R 5750124 intergenic not near genes chr3R 5753277 intergenic CG2091 - chr3R_18_5750001 chr3R_5750001 RAL-843 2508 chr3R 5762991 5763064 chr3R 5763132 5763205 19 139 5.5 8.5 7.0 2.4 214 chr3R 5762991 intron CG2082 - chr3R 5763098 intron CG2082 - chr3R 5763205 intron CG2082 - chr3R_19_5760001 chr3R_5760001 RAL-843 2509 chr3R 5772333 5772404 chr3R 5772536 5772612 33 207 7.5 7.5 7.5 3.9 279 chr3R 5772333 intron CG2082 - chr3R 5772472 intron CG2082 - chr3R 5772612 intron CG2082 - chr3R_33_5770001 chr3R_5770001 RAL-843 2510 chr3R 5809070 5809139 chr3R 5809361 5809430 pogo 23 291 6.5 7.5 7.0 2.9 360 chr3R 5809070 3` UTR CG11000 + chr3R 5809250 3` UTR CG11000 + chr3R 5809430 3` UTR CG11000 + chr3R_23_5805001 chr3R_5805001 RAL-843 2511 chr3R 5822351 5822403 chr3R 5823556 5823620 1360 29 1215 8.5 7.0 7.8 3.3 1269 chr3R 5822351 3` UTR CG2023 - chr3R 5822986 3` UTR CG2023 - chr3R 5823620 3` UTR CG2023 - chr3R_29_5820001 chr3R_5820001 RAL-843 2512 chr3R 5836160 5836175 chr3R 5836314 5836329 13 154 21.5 23.5 22.5 0.6 169 chr3R 5836160 exon,3` UTR CG1208 +,CR45192 - chr3R 5836244 intron CG1208 + chr3R 5836329 intron CG1208 + chr3R_13_5835001 chr3R_5835001 RAL-843 2513 chr3R 5840787 5840850 chr3R 5840910 5840989 41 138 9.5 10.0 9.8 3.8 202 chr3R 5840787 intergenic CG1213 + chr3R 5840888 intergenic CG1213 + chr3R 5840989 intergenic CG1213 + chr3R_41_5840001 chr3R_5840001 RAL-843 2514 chr3R 5882627 5882693 chr3R 5882822 5882899 20 205 9.0 8.0 8.5 2.1 272 chr3R 5882627 intron CG34113 - chr3R 5882763 intron CG34113 - chr3R 5882899 intron CG34113 - chr3R_20_5880001 chr3R_5880001 RAL-843 2515 chr3R 5895942 5895976 chr3R 5896169 5896240 18 249 1.0 4.5 2.8 4.7 298 chr3R 5895942 intron CG34113 - chr3R 5896091 intron CG34113 - chr3R 5896240 intron CG34113 - chr3R_18_5895001 chr3R_5895001 RAL-843 2516 chr3R 5896921 5896974 chr3R 5897330 5897372 19 406 12.5 5.0 8.8 1.9 451 chr3R 5896921 intron CG34113 - chr3R 5897146 intron CG34113 - chr3R 5897372 intron CG34113 - chr3R_19_5895001 chr3R_5895001 RAL-843 2517 chr3R 5896980 5896997 chr3R 5897324 5897406 8 396 8.0 4.0 6.0 1.1 426 chr3R 5896980 intron CG34113 - chr3R 5897193 intron CG34113 - chr3R 5897406 intron CG34113 - chr3R_8_5895001 chr3R_5895001 RAL-843 2518 chr3R 5927520 5927579 chr3R 5927810 5927869 pogo 20 286 13.5 9.5 11.5 1.6 349 chr3R 5927520 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927869 intron CG34113 - chr3R_20_5925001 chr3R_5925001 RAL-843 2519 chr3R 5931417 5931449 chr3R 5931554 5931587 18 136 2.5 9.5 6.0 2.6 170 chr3R 5931417 intron CG34113 - chr3R 5931502 intron CG34113 - chr3R 5931587 intron CG34113 - chr3R_18_5930001 chr3R_5930001 RAL-843 2520 chr3R 6015927 6015990 chr3R 6024444 6024518 Tirant 20 8520 10.5 5.0 7.8 2.3 8591 chr3R 6015927 intergenic not near genes chr3R 6020222 intergenic not near genes chr3R 6024518 intergenic not near genes chr3R_20_6020001 chr3R_6020001 RAL-843 2521 chr3R 6032292 6032294 chr3R 8706935 8706937 4 2674643 18.0 32.0 25.0 0.2 2674645 chr3R 6032292 intergenic not near genes chr3R 7369614 intergenic MstProx - chr3R 8706937 intergenic not near genes chr3R_4_7365001 chr3R_7365001 RAL-843 2522 chr3R 6048404 6048466 chr3R 6048537 6048599 38 131 8.5 7.5 8.0 4.2 195 chr3R 6048404 intergenic not near genes chr3R 6048502 intergenic not near genes chr3R 6048599 intergenic not near genes chr3R_38_6045001 chr3R_6045001 RAL-843 2523 chr3R 6116075 6116102 chr3R 6116211 6116219 6 132 13.0 14.5 13.8 0.4 144 chr3R 6116075 intergenic not near genes chr3R 6116147 intergenic not near genes chr3R 6116219 intergenic not near genes chr3R_6_6115001 chr3R_6115001 RAL-843 2524 chr3R 6121141 6121180 chr3R 6121376 6121448 BS 10 258 0.0 5.5 2.8 2.6 307 chr3R 6121141 intergenic not near genes chr3R 6121294 intergenic not near genes chr3R 6121448 intergenic not near genes chr3R_10_6120001 chr3R_6120001 RAL-843 2525 chr3R 6158470 6158531 chr3R 6167103 6167164 Tirant 18 8624 12.0 10.5 11.2 1.5 8694 chr3R 6158470 intergenic not near genes chr3R 6162817 intergenic not near genes chr3R 6167164 intergenic CG1077 + chr3R_18_6160001 chr3R_6160001 RAL-843 2526 chr3R 6175130 6175191 chr3R 6182452 6182513 HMS-Beagle2 25 7322 9.5 8.0 8.8 2.6 7383 chr3R 6175130 intergenic Osi1 + chr3R 6178822 intron CR45194 + chr3R 6182513 intergenic CR45194 + chr3R_25_6175001 chr3R_6175001 RAL-843 2527 chr3R 6206252 6206312 chr3R 6206507 6206542 BS 18 260 7.0 7.5 7.2 2.2 290 chr3R 6206252 exon Osi24 + chr3R 6206397 intron Osi24 + chr3R 6206542 intron Osi24 + chr3R_18_6205001 chr3R_6205001 RAL-843 2528 chr3R 6226576 6226641 chr3R 6226714 6226779 20 136 9.0 10.0 9.5 1.9 203 chr3R 6226576 intergenic not near genes chr3R 6226678 intergenic not near genes chr3R 6226779 intergenic not near genes chr3R_20_6225001 chr3R_6225001 RAL-843 2529 chr3R 6415175 6415250 chr3R 6415321 6415384 32 140 1.0 9.5 5.2 5.2 209 chr3R 6415175 intron gpp + chr3R 6415280 intron gpp + chr3R 6415384 intron gpp + chr3R_32_6415001 chr3R_6415001 RAL-843 2530 chr3R 6461549 6461600 chr3R 6461679 6461730 17 130 10.5 7.5 9.0 1.7 181 chr3R 6461549 intergenic not near genes chr3R 6461640 intergenic not near genes chr3R 6461730 intergenic not near genes chr3R_17_6460001 chr3R_6460001 RAL-843 2531 chr3R 6509983 6510042 chr3R 6515113 6515173 jockey 21 5131 12.5 6.5 9.5 2.0 5190 chr3R 6509983 intergenic not near genes chr3R 6512578 intergenic not near genes chr3R 6515173 intergenic not near genes chr3R_21_6510001 chr3R_6510001 RAL-843 2532 chr3R 6591191 6591247 chr3R 6592665 6592720 17 1473 8.5 13.0 10.8 1.4 1529 chr3R 6591191 intron dpr11 - chr3R 6591956 intron dpr11 - chr3R 6592720 intron dpr11 - chr3R_17_6590001 chr3R_6590001 RAL-843 2533 chr3R 6645786 6645846 chr3R 6646142 6646202 15 356 7.0 4.0 5.5 2.3 416 chr3R 6645786 intergenic not near genes chr3R 6645994 intergenic not near genes chr3R 6646202 intergenic not near genes chr3R_15_6645001 chr3R_6645001 RAL-843 2534 chr3R 6697270 6697309 chr3R 6697406 6697445 13 135 9.0 8.5 8.8 1.3 175 chr3R 6697270 intergenic not near genes chr3R 6697358 intergenic not near genes chr3R 6697445 intergenic not near genes chr3R_13_6695001 chr3R_6695001 RAL-843 2535 chr3R 6705627 6705710 chr3R 6705908 6705984 22 275 0.0 6.0 3.0 5.5 357 chr3R 6705627 intergenic not near genes chr3R 6705806 intergenic not near genes chr3R 6705984 intergenic not near genes chr3R_22_6705001 chr3R_6705001 RAL-843 2536 chr3R 6737454 6737526 chr3R 6739291 6739343 Doc 21 1821 7.5 8.0 7.8 2.4 1889 chr3R 6737454 intron pb - chr3R 6738398 intron pb - chr3R 6739343 intron pb - chr3R_21_6735001 chr3R_6735001 RAL-843 2537 chr3R 6773704 6773739 chr3R 6773846 6773871 5 134 0.0 6.5 3.2 1.2 167 chr3R 6773704 intron CR42721 + chr3R 6773788 intron CR42721 + chr3R 6773871 intron CR42721 + chr3R_5_6770001 chr3R_6770001 RAL-843 2538 chr3R 6773745 6773755 chr3R 6773844 6773882 5 116 0.0 6.0 3.0 1.2 137 chr3R 6773745 intron CR42721 + chr3R 6773814 intron CR42721 + chr3R 6773882 intron CR42721 + chr3R_5_6770001 chr3R_6770001 RAL-843 2539 chr3R 6773757 6773768 chr3R 6773837 6773900 9 122 0.0 5.0 2.5 2.6 143 chr3R 6773757 intron CR42721 + chr3R 6773828 intron CR42721 + chr3R 6773900 intron CR42721 + chr3R_9_6770001 chr3R_6770001 RAL-843 2540 chr3R 6856333 6856399 chr3R 6856500 6856566 24 167 6.0 5.0 5.5 3.7 233 chr3R 6856333 intergenic not near genes chr3R 6856450 intergenic not near genes chr3R 6856566 intergenic not near genes chr3R_24_6855001 chr3R_6855001 RAL-843 2541 chr3R 6862173 6862234 chr3R 6862310 6862371 22 137 7.0 5.5 6.2 3.1 198 chr3R 6862173 intergenic not near genes chr3R 6862272 intergenic not near genes chr3R 6862371 intergenic not near genes chr3R_22_6860001 chr3R_6860001 RAL-843 2542 chr3R 6918050 6918086 chr3R 6918178 6918214 11 128 6.0 7.0 6.5 1.5 164 chr3R 6918050 intron Antp - chr3R 6918132 intron Antp - chr3R 6918214 intron Antp - chr3R_11_6915001 chr3R_6915001 RAL-843 2543 chr3R 7019377 7019433 chr3R 7019696 7019752 25 317 9.0 12.5 10.8 2.1 375 chr3R 7019377 intergenic not near genes chr3R 7019564 intergenic not near genes chr3R 7019752 intergenic not near genes chr3R_25_7015001 chr3R_7015001 RAL-843 2544 chr3R 7092739 7092769 chr3R 7093353 7093362 13 612 19.5 7.5 13.5 0.9 623 chr3R 7092739 3` UTR CR43685 - chr3R 7093050 intron CR43685 - chr3R 7093362 3` UTR CR43685 - chr3R_13_7090001 chr3R_7090001 RAL-843 2545 chr3R 7092771 7092812 chr3R 7093352 7093385 23 607 7.0 7.5 7.2 2.8 614 chr3R 7092771 3` UTR CR43685 - chr3R 7093078 intron CR43685 - chr3R 7093385 3` UTR CR43685 - chr3R_23_7090001 chr3R_7090001 RAL-843 2546 chr3R 7103237 7103311 chr3R 7103363 7103421 12 114 10.0 6.5 8.2 1.3 184 chr3R 7103237 intron Alh - chr3R 7103329 intron Alh - chr3R 7103421 intron Alh - chr3R_12_7100001 chr3R_7100001 RAL-843 2547 chr3R 7121689 7121735 chr3R 7121822 7121868 4 127 6.0 8.0 7.0 0.5 179 chr3R 7121689 exon Alh - chr3R 7121778 intron Alh - chr3R 7121868 intron Alh - chr3R_4_7120001 chr3R_7120001 RAL-843 2548 chr3R 7126468 7126529 chr3R 7126613 7126674 30 145 5.5 10.0 7.8 3.4 206 chr3R 7126468 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126571 3` UTR CG10068 - chr3R 7126674 3` UTR CG10068 - chr3R_30_7125001 chr3R_7125001 RAL-843 2549 chr3R 7167343 7167412 chr3R 7167490 7167559 28 146 10.0 10.0 10.0 2.5 216 chr3R 7167343 intron sas + chr3R 7167451 intron sas + chr3R 7167559 intron sas + chr3R_28_7165001 chr3R_7165001 RAL-843 2550 chr3R 7396322 7396383 chr3R 7396475 7396536 12 153 5.5 5.5 5.5 1.8 214 chr3R 7396322 intergenic not near genes chr3R 7396429 intergenic not near genes chr3R 7396536 intergenic not near genes chr3R_12_7395001 chr3R_7395001 RAL-843 2551 chr3R 7402159 7402194 chr3R 7402285 7402342 17 138 7.0 7.0 7.0 2.1 183 chr3R 7402159 intergenic not near genes chr3R 7402250 intergenic not near genes chr3R 7402342 intergenic not near genes chr3R_17_7400001 chr3R_7400001 RAL-843 2552 chr3R 7436264 7436291 chr3R 7436406 7436435 INE-1 4 143 18.0 4.0 11.0 0.3 171 chr3R 7436264 intergenic not near genes chr3R 7436350 intergenic not near genes chr3R 7436435 intergenic not near genes chr3R_4_7435001 chr3R_7435001 RAL-843 2553 chr3R 7447946 7448007 chr3R 7448074 7448135 27 127 14.0 6.0 10.0 2.5 189 chr3R 7447946 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448135 intergenic not near genes chr3R_27_7445001 chr3R_7445001 RAL-843 2554 chr3R 7617945 7618019 chr3R 7618087 7618148 23 141 3.5 10.0 6.8 2.9 203 chr3R 7617945 intron CG34127 - chr3R 7618046 intron CG34127 - chr3R 7618148 intron CG34127 - chr3R_23_7615001 chr3R_7615001 RAL-843 2555 chr3R 7621483 7621560 chr3R 7621623 7621674 20 138 4.0 4.5 4.2 3.8 191 chr3R 7621483 intron CG34127 - chr3R 7621578 intron CG34127 - chr3R 7621674 intron CG34127 - chr3R_20_7620001 chr3R_7620001 RAL-843 2556 chr3R 7654959 7655031 chr3R 7655091 7655163 25 129 7.0 12.0 9.5 2.4 204 chr3R 7654959 intergenic not near genes chr3R 7655061 intergenic not near genes chr3R 7655163 intergenic not near genes chr3R_25_7655001 chr3R_7655001 RAL-843 2557 chr3R 7694534 7694604 chr3R 7713645 7713715 invader3 19 19111 6.0 5.0 5.5 2.9 19181 chr3R 7694534 3` UTR Nlg1 + chr3R 7704124 intergenic not near genes chr3R 7713715 intergenic not near genes chr3R_19_7700001 chr3R_7700001 RAL-843 2558 chr3R 7729426 7729436 chr3R 7737414 7737424 Stalker2 4 7988 19.0 6.5 12.8 0.3 7998 chr3R 7729426 intergenic not near genes chr3R 7733425 intergenic not near genes chr3R 7737424 intergenic not near genes chr3R_4_7730001 chr3R_7730001 RAL-843 2559 chr3R 7729440 7729457 chr3R 7737412 7737445 Stalker2 6 7985 14.5 5.5 10.0 0.5 8005 chr3R 7729440 intergenic not near genes chr3R 7733442 intergenic not near genes chr3R 7737445 intergenic not near genes chr3R_6_7730001 chr3R_7730001 RAL-843 2560 chr3R 7729465 7729472 chr3R 7737453 7737460 Stalker2 7 7988 12.5 15.5 14.0 0.5 7995 chr3R 7729465 intergenic not near genes chr3R 7733462 intergenic not near genes chr3R 7737460 intergenic not near genes chr3R_7_7730001 chr3R_7730001 RAL-843 2561 chr3R 7729477 7729494 chr3R 7737449 7737474 Stalker2 8 7985 7.5 14.5 11.0 0.7 7997 chr3R 7729477 intergenic not near genes chr3R 7733476 intergenic not near genes chr3R 7737474 intergenic not near genes chr3R_8_7730001 chr3R_7730001 RAL-843 2562 chr3R 7884621 7884642 chr3R 7884749 7884769 9 128 21.5 10.0 15.8 0.5 148 chr3R 7884621 intron CG17816 - chr3R 7884695 intron CG17816 - chr3R 7884769 intron CG17816 - chr3R_9_7880001 chr3R_7880001 RAL-843 2563 chr3R 7884648 7884699 chr3R 7884746 7884790 20 106 13.0 11.0 12.0 1.5 142 chr3R 7884648 intron CG17816 - chr3R 7884719 intron CG17816 - chr3R 7884790 intron CG17816 - chr3R_20_7880001 chr3R_7880001 RAL-843 2564 chr3R 8049021 8049038 chr3R 8049645 8049662 8 624 0.5 5.0 2.8 2.1 641 chr3R 8049021 intron CG43060 + chr3R 8049342 intron,intron CG43060 +,CG43618 + chr3R 8049662 intron CG43060 + chr3R_8_8045001 chr3R_8045001 RAL-843 2565 chr3R 8082538 8082591 chr3R 8082665 8082718 20 127 14.5 13.0 13.8 1.4 180 chr3R 8082538 intron mAChR-B + chr3R 8082628 intron mAChR-B + chr3R 8082718 exon mAChR-B + chr3R_20_8080001 chr3R_8080001 RAL-843 2566 chr3R 8090516 8090561 chr3R 8094043 8094082 297 18 3524 10.0 14.0 12.0 1.4 3566 chr3R 8090516 intergenic CR44330 + chr3R 8092299 intergenic not near genes chr3R 8094082 intergenic CG7900 + chr3R_18_8090001 chr3R_8090001 RAL-843 2567 chr3R 8094367 8094427 chr3R 8099722 8099782 Transpac 31 5355 9.5 11.5 10.5 2.7 5415 chr3R 8094367 intron CG7900 + chr3R 8097074 intron CG7900 + chr3R 8099782 intron CG7900 + chr3R_31_8095001 chr3R_8095001 RAL-843 2568 chr3R 8101721 8101783 chr3R 8104847 8104917 G2 25 3130 13.0 6.5 9.8 2.3 3196 chr3R 8101721 exon CG7900 + chr3R 8103319 intron CG7900 + chr3R 8104917 3` UTR CG7900 + chr3R_25_8100001 chr3R_8100001 RAL-843 2569 chr3R 8107343 8107409 chr3R 8107527 8107593 33 182 5.5 7.0 6.2 4.6 250 chr3R 8107343 intron puc + chr3R 8107468 intron puc + chr3R 8107593 intron puc + chr3R_33_8105001 chr3R_8105001 RAL-843 2570 chr3R 8207519 8207543 chr3R 8208406 8208418 F-element 10 891 16.5 6.5 11.5 0.8 899 chr3R 8207519 intergenic not near genes chr3R 8207968 intergenic not near genes chr3R 8208418 intergenic not near genes chr3R_10_8205001 chr3R_8205001 RAL-843 2571 chr3R 8207544 8207581 chr3R 8208404 8208476 F-element 18 888 7.5 6.5 7.0 2.2 932 chr3R 8207544 intergenic not near genes chr3R 8208010 intergenic not near genes chr3R 8208476 intergenic not near genes chr3R_18_8205001 chr3R_8205001 RAL-843 2572 chr3R 8339246 8339247 chr3R 21907534 21907535 11 13568288 41.5 34.0 37.8 0.3 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-843 2573 chr3R 8402964 8403034 chr3R 8412180 8412233 roo 27 9209 8.5 12.5 10.5 2.3 9269 chr3R 8402964 intron CG45263 - chr3R 8407598 intron CG45263 - chr3R 8412233 intron CG45263 - chr3R_27_8405001 chr3R_8405001 RAL-843 2574 chr3R 8552329 8552340 chr3R 8552456 8552470 5 129 19.5 9.0 14.2 0.3 141 chr3R 8552329 intergenic Or85d + chr3R 8552400 intergenic Or85d + chr3R 8552470 intergenic Or85d + chr3R_5_8550001 chr3R_8550001 RAL-843 2575 chr3R 8552347 8552402 chr3R 8552448 8552505 25 124 8.0 8.0 8.0 2.8 158 chr3R 8552347 intergenic Or85d + chr3R 8552426 intergenic Or85d + chr3R 8552505 intergenic Or85d + chr3R_25_8550001 chr3R_8550001 RAL-843 2576 chr3R 8570451 8570511 chr3R 8575116 8575151 HMS-Beagle 16 4676 6.0 4.0 5.0 2.7 4700 chr3R 8570451 intergenic not near genes chr3R 8572801 intergenic not near genes chr3R 8575151 intergenic not near genes chr3R_16_8570001 chr3R_8570001 RAL-843 2577 chr3R 8601731 8601745 chr3R 8610934 8610943 roo 5 9201 19.0 6.0 12.5 0.4 9212 chr3R 8601731 intron 5-HT2B + chr3R 8606337 intron 5-HT2B + chr3R 8610943 intron 5-HT2B + chr3R_5_8605001 chr3R_8605001 RAL-843 2578 chr3R 8601763 8601796 chr3R 8610930 8610994 roo 23 9195 6.0 6.0 6.0 3.3 9231 chr3R 8601763 intron 5-HT2B + chr3R 8606378 intron 5-HT2B + chr3R 8610994 intron 5-HT2B + chr3R_23_8605001 chr3R_8605001 RAL-843 2579 chr3R 8685249 8685314 chr3R 8685399 8685464 27 150 7.0 7.0 7.0 3.4 215 chr3R 8685249 intron CR44937 - chr3R 8685356 intron CR44937 - chr3R 8685464 intron CR44937 - chr3R_27_8685001 chr3R_8685001 RAL-843 2580 chr3R 8707321 8707333 chr3R 8709812 8709824 jockey 8 2490 21.0 8.0 14.5 0.5 2503 chr3R 8707321 intergenic not near genes chr3R 8708572 intergenic not near genes chr3R 8709824 intergenic not near genes chr3R_8_8705001 chr3R_8705001 RAL-843 2581 chr3R 8707334 8707380 chr3R 8709810 8709862 jockey 24 2489 9.5 7.5 8.5 2.5 2528 chr3R 8707334 intergenic not near genes chr3R 8708598 intergenic not near genes chr3R 8709862 intergenic not near genes chr3R_24_8705001 chr3R_8705001 RAL-843 2582 chr3R 8898176 8898212 chr3R 8913804 8913840 297 10 15628 16.5 8.0 12.2 0.8 15664 chr3R 8898176 intron pyd - chr3R 8906008 intron pyd - chr3R 8913840 intron pyd - chr3R_10_8905001 chr3R_8905001 RAL-843 2583 chr3R 8917848 8917910 chr3R 8917978 8918040 29 128 5.5 5.5 5.5 4.5 192 chr3R 8917848 intron pyd - chr3R 8917944 intron pyd - chr3R 8918040 intron pyd - chr3R_29_8915001 chr3R_8915001 RAL-843 2584 chr3R 9036336 9036395 chr3R 9036464 9036523 20 128 9.5 9.0 9.2 2.0 187 chr3R 9036336 intron neur - chr3R 9036430 intron neur - chr3R 9036523 intron neur - chr3R_20_9035001 chr3R_9035001 RAL-843 2585 chr3R 9079516 9079529 chr3R 9079660 9079673 7 144 13.0 7.0 10.0 0.6 157 chr3R 9079516 intron pum - chr3R 9079594 intron pum - chr3R 9079673 intron pum - chr3R_7_9075001 chr3R_9075001 RAL-843 2586 chr3R 9083093 9083171 chr3R 9083228 9083306 37 130 6.5 10.0 8.2 4.0 213 chr3R 9083093 intron pum - chr3R 9083200 intron pum - chr3R 9083306 intron pum - chr3R_37_9080001 chr3R_9080001 RAL-843 2587 chr3R 9099407 9099480 chr3R 9099541 9099613 28 133 6.0 10.0 8.0 3.1 206 chr3R 9099407 intron pum - chr3R 9099510 intron pum - chr3R 9099613 intron pum - chr3R_28_9095001 chr3R_9095001 RAL-843 2588 chr3R 9101803 9101827 chr3R 9101951 9101975 17 148 12.5 7.5 10.0 1.5 172 chr3R 9101803 intron pum - chr3R 9101889 intron pum - chr3R 9101975 intron pum - chr3R_17_9100001 chr3R_9100001 RAL-843 2589 chr3R 9101831 9101863 chr3R 9101945 9102011 13 143 7.0 6.0 6.5 1.7 180 chr3R 9101831 intron pum - chr3R 9101921 intron pum - chr3R 9102011 intron pum - chr3R_13_9100001 chr3R_9100001 RAL-843 2590 chr3R 9108818 9108883 chr3R 9108944 9109009 36 125 9.5 10.0 9.8 3.3 191 chr3R 9108818 intron pum - chr3R 9108914 intron pum - chr3R 9109009 intron pum - chr3R_36_9105001 chr3R_9105001 RAL-843 2591 chr3R 9141115 9141187 chr3R 9141254 9141326 36 137 6.5 8.5 7.5 4.2 211 chr3R 9141115 intron pum - chr3R 9141220 intron pum - chr3R 9141326 intron pum - chr3R_36_9140001 chr3R_9140001 RAL-843 2592 chr3R 9227930 9227960 chr3R 9228094 9228127 7 165 8.5 18.0 13.2 0.5 197 chr3R 9227930 intron pum - chr3R 9228028 intron pum - chr3R 9228127 intron pum - chr3R_7_9225001 chr3R_9225001 RAL-843 2593 chr3R 9251392 9251409 chr3R 9251522 9251539 10 130 19.0 6.5 12.8 0.7 147 chr3R 9251392 3` UTR CG8420 + chr3R 9251466 intergenic CG8420 +,St2 + chr3R 9251539 intergenic CG8420 +,St2 + chr3R_10_9250001 chr3R_9250001 RAL-843 2594 chr3R 9251414 9251448 chr3R 9251519 9251578 19 126 11.5 5.5 8.5 2.0 164 chr3R 9251414 3` UTR CG8420 + chr3R 9251496 intergenic CG8420 +,St2 + chr3R 9251578 intergenic CG8420 +,St2 + chr3R_19_9250001 chr3R_9250001 RAL-843 2595 chr3R 9253116 9253169 chr3R 9253533 9253586 11 417 4.5 2.5 3.5 2.4 470 chr3R 9253116 3` UTR St2 + chr3R 9253351 3` UTR St2 + chr3R 9253586 intergenic St2 + chr3R_11_9250001 chr3R_9250001 RAL-843 2596 chr3R 9317618 9317685 chr3R 9317752 9317805 17 136 2.5 4.5 3.5 3.8 187 chr3R 9317618 intron CG8861 - chr3R 9317712 intron CG8861 - chr3R 9317805 intron CG8861 - chr3R_17_9315001 chr3R_9315001 RAL-843 2597 chr3R 9319536 9319596 chr3R 9320021 9320076 jockey 31 484 15.0 14.5 14.8 2.0 540 chr3R 9319536 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320076 intron CG8861 - chr3R_31_9315001 chr3R_9315001 RAL-843 2598 chr3R 9361804 9361831 chr3R 9362084 9362122 pogo 10 288 10.0 17.0 13.5 0.7 318 chr3R 9361804 3` UTR CG45050 + chr3R 9361963 3` UTR CG45050 + chr3R 9362122 3` UTR CG45050 + chr3R_10_9360001 chr3R_9360001 RAL-843 2599 chr3R 9379124 9379175 chr3R 9379256 9379271 11 128 0.5 9.5 5.0 1.8 147 chr3R 9379124 intron FER - chr3R 9379198 intron FER - chr3R 9379271 intron FER - chr3R_11_9375001 chr3R_9375001 RAL-843 2600 chr3R 9425365 9425416 chr3R 9425494 9425545 16 127 11.0 15.0 13.0 1.1 180 chr3R 9425365 intron ps + chr3R 9425455 intron ps + chr3R 9425545 intron ps + chr3R_16_9425001 chr3R_9425001 RAL-843 2601 chr3R 9610797 9610871 chr3R 9610990 9611020 21 189 7.0 10.5 8.8 2.1 223 chr3R 9610797 intron CG8312 + chr3R 9610908 intron CG8312 + chr3R 9611020 intron CG8312 + chr3R_21_9610001 chr3R_9610001 RAL-843 2602 chr3R 9620956 9620956 chr3R 21907535 21907536 7 12286579 24.0 34.0 29.0 0.2 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_7_15760001 chr3R_15760001 RAL-843 2603 chr3R 9699934 9699947 chr3R 9700073 9700086 13 139 26.5 11.0 18.8 0.7 152 chr3R 9699934 intron Unc-115a - chr3R 9700010 intron Unc-115a - chr3R 9700086 intron Unc-115a - chr3R_13_9700001 chr3R_9700001 RAL-843 2604 chr3R 9699958 9699996 chr3R 9700070 9700103 1360 29 136 16.0 11.0 13.5 2.0 145 chr3R 9699958 intron Unc-115a - chr3R 9700030 intron Unc-115a - chr3R 9700103 intron Unc-115a - chr3R_29_9700001 chr3R_9700001 RAL-843 2605 chr3R 9824452 9824530 chr3R 9824750 9824828 31 295 9.0 11.5 10.2 2.8 376 chr3R 9824452 3` UTR CR42858 - chr3R 9824640 3` UTR CR42858 - chr3R 9824828 intron CR42858 - chr3R_31_9820001 chr3R_9820001 RAL-843 2606 chr3R 9836827 9836896 chr3R 9836964 9837031 26 133 5.0 10.5 7.8 3.0 204 chr3R 9836827 intron Teh1 - chr3R 9836929 intron Teh1 - chr3R 9837031 intron Teh1 - chr3R_26_9835001 chr3R_9835001 RAL-843 2607 chr3R 9877980 9877986 chr3R 9878118 9878124 4 138 11.5 11.0 11.2 0.3 144 chr3R 9877980 intron,intron Glut4EF +,CR45029 - chr3R 9878052 intron,intron Glut4EF +,CR45029 - chr3R 9878124 intron,intron Glut4EF +,CR45029 - chr3R_4_9875001 chr3R_9875001 RAL-843 2608 chr3R 9877992 9878026 chr3R 9878115 9878164 16 135 8.0 10.0 9.0 1.6 172 chr3R 9877992 intron,intron Glut4EF +,CR45029 - chr3R 9878078 intron,intron Glut4EF +,CR45029 - chr3R 9878164 intron,3` UTR Glut4EF +,CR45029 - chr3R_16_9875001 chr3R_9875001 RAL-843 2609 chr3R 9891411 9891463 chr3R 9891601 9891618 14 184 7.5 1.0 4.2 2.7 207 chr3R 9891411 intron Glut4EF + chr3R 9891514 intron Glut4EF + chr3R 9891618 intron Glut4EF + chr3R_14_9890001 chr3R_9890001 RAL-843 2610 chr3R 9898739 9898814 chr3R 9898881 9898956 30 140 7.5 6.5 7.0 3.8 217 chr3R 9898739 intron Glut4EF + chr3R 9898848 intron Glut4EF + chr3R 9898956 intron Glut4EF + chr3R_30_9895001 chr3R_9895001 RAL-843 2611 chr3R 9920795 9920805 chr3R 9920942 9920952 4 144 7.0 16.5 11.8 0.3 157 chr3R 9920795 intron Glut4EF + chr3R 9920874 intron Glut4EF + chr3R 9920952 intron Glut4EF + chr3R_4_9920001 chr3R_9920001 RAL-843 2612 chr3R 9942530 9942559 chr3R 9942874 9942923 14 362 2.0 7.0 4.5 2.5 393 chr3R 9942530 intron Glut4EF + chr3R 9942726 intron Glut4EF + chr3R 9942923 intron Glut4EF + chr3R_14_9940001 chr3R_9940001 RAL-843 2613 chr3R 10078474 10078543 chr3R 10078651 10078714 21 176 8.5 11.5 10.0 1.9 240 chr3R 10078474 intergenic not near genes chr3R 10078594 intergenic not near genes chr3R 10078714 intergenic not near genes chr3R_21_10075001 chr3R_10075001 RAL-843 2614 chr3R 10085902 10085965 chr3R 10086250 10086313 37 347 12.0 7.5 9.8 3.4 411 chr3R 10085902 intron CR45054 + chr3R 10086108 intron CR45054 + chr3R 10086313 intron CR45054 + chr3R_37_10085001 chr3R_10085001 RAL-843 2615 chr3R 10183053 10183092 chr3R 10183180 10183219 13 127 8.0 5.5 6.8 1.7 166 chr3R 10183053 intron CG12814 - chr3R 10183136 intron CG12814 - chr3R 10183219 intron CG12814 - chr3R_13_10180001 chr3R_10180001 RAL-843 2616 chr3R 10196912 10196926 chr3R 10202946 10202965 297 9 6037 18.0 9.5 13.8 0.6 6053 chr3R 10196912 exon Syn + chr3R 10199938 intron Syn + chr3R 10202965 intron Syn + chr3R_9_10195001 chr3R_10195001 RAL-843 2617 chr3R 10231737 10231807 chr3R 10237364 10237434 mdg3 28 5626 8.5 12.0 10.2 2.5 5697 chr3R 10231737 intron CG42795 + chr3R 10234586 intron CG42795 + chr3R 10237434 intron CG42795 + chr3R_28_10230001 chr3R_10230001 RAL-843 2618 chr3R 10255335 10255387 chr3R 10260825 10260875 I-element 19 5488 12.0 8.0 10.0 1.7 5540 chr3R 10255335 intergenic Sirt6 -,CG3999 + chr3R 10258105 intron Sirt6 - chr3R 10260875 exon Sirt6 - chr3R_19_10255001 chr3R_10255001 RAL-843 2619 chr3R 10402981 10403021 chr3R 10403112 10403152 11 131 17.5 7.0 12.2 0.8 171 chr3R 10402981 3` UTR CG6325 - chr3R 10403066 3` UTR CG6325 - chr3R 10403152 3` UTR CG6325 - chr3R_11_10400001 chr3R_10400001 RAL-843 2620 chr3R 10403024 10403062 chr3R 10403155 10403193 23 131 8.0 16.0 12.0 1.8 169 chr3R 10403024 3` UTR CG6325 - chr3R 10403108 3` UTR CG6325 - chr3R 10403193 3` UTR CG6325 - chr3R_23_10400001 chr3R_10400001 RAL-843 2621 chr3R 10417429 10417495 chr3R 10417814 10417880 21 385 9.5 5.5 7.5 2.5 451 chr3R 10417429 intergenic not near genes chr3R 10417654 intergenic not near genes chr3R 10417880 intergenic not near genes chr3R_21_10415001 chr3R_10415001 RAL-843 2622 chr3R 10487607 10487618 chr3R 10487733 10487747 4 128 5.0 17.5 11.2 0.3 140 chr3R 10487607 intergenic not near genes chr3R 10487677 intergenic not near genes chr3R 10487747 intergenic not near genes chr3R_4_10485001 chr3R_10485001 RAL-843 2623 chr3R 10505177 10505249 chr3R 10505540 10505627 19 368 10.0 6.0 8.0 2.1 450 chr3R 10505177 intergenic not near genes chr3R 10505402 intergenic not near genes chr3R 10505627 intergenic not near genes chr3R_19_10505001 chr3R_10505001 RAL-843 2624 chr3R 10531831 10531895 chr3R 10531962 10531974 17 124 8.0 0.0 4.0 3.4 143 chr3R 10531831 intron hth - chr3R 10531902 intron hth - chr3R 10531974 intron hth - chr3R_17_10530001 chr3R_10530001 RAL-843 2625 chr3R 10593430 10593448 chr3R 10593565 10593566 6 132 11.0 19.5 15.2 0.4 136 chr3R 10593430 intron hth - chr3R 10593498 intron hth - chr3R 10593566 exon hth - chr3R_6_10590001 chr3R_10590001 RAL-843 2626 chr3R 10593449 10593462 chr3R 10593559 10593596 6 126 9.0 18.0 13.5 0.4 147 chr3R 10593449 intron hth - chr3R 10593522 intron hth - chr3R 10593596 exon hth - chr3R_6_10590001 chr3R_10590001 RAL-843 2627 chr3R 10651768 10651835 chr3R 10651917 10651984 29 149 10.0 10.5 10.2 2.6 216 chr3R 10651768 intergenic not near genes chr3R 10651876 intergenic not near genes chr3R 10651984 intergenic not near genes chr3R_29_10650001 chr3R_10650001 RAL-843 2628 chr3R 10683508 10683586 chr3R 10683671 10683734 32 160 6.5 7.5 7.0 4.0 226 chr3R 10683508 intron CR44230 + chr3R 10683621 intron CR44230 + chr3R 10683734 5` UTR CR44230 + chr3R_32_10680001 chr3R_10680001 RAL-843 2629 chr3R 10687289 10687315 chr3R 10687415 10687422 5 120 13.5 17.5 15.5 0.3 133 chr3R 10687289 exon Skeletor + chr3R 10687356 intron Skeletor + chr3R 10687422 intron Skeletor + chr3R_5_10685001 chr3R_10685001 RAL-843 2630 chr3R 10745379 10745455 chr3R 10745511 10745572 35 133 6.5 6.5 6.5 4.7 193 chr3R 10745379 intron TkR86C - chr3R 10745476 intron TkR86C - chr3R 10745572 intron TkR86C - chr3R_35_10745001 chr3R_10745001 RAL-843 2631 chr3R 10804071 10804194 chr3R 10811703 10811776 17.6 5 7601 1.0 1.5 1.2 2.3 7705 chr3R 10804071 intergenic CG14692 - chr3R 10807924 intergenic not near genes chr3R 10811776 3` UTR CG14693 - chr3R_5_10805001 chr3R_10805001 RAL-843 2632 chr3R 10817174 10817243 chr3R 10817306 10817376 38 133 6.5 7.5 7.0 4.8 202 chr3R 10817174 3` UTR CG4089 + chr3R 10817275 3` UTR CG4089 + chr3R 10817376 3` UTR CG4089 + chr3R_38_10815001 chr3R_10815001 RAL-843 2633 chr3R 10868554 10868587 chr3R 10868682 10868713 7 125 13.5 15.0 14.2 0.5 159 chr3R 10868554 5` UTR SelR - chr3R 10868634 5` UTR SelR - chr3R 10868713 5` UTR Tsp86D + chr3R_7_10865001 chr3R_10865001 RAL-843 2634 chr3R 10868613 10868620 chr3R 10868671 10868703 7 91 8.5 13.0 10.8 0.6 90 chr3R 10868613 5` UTR SelR - chr3R 10868658 intergenic SelR -,Tsp86D + chr3R 10868703 intergenic Tsp86D +,SelR - chr3R_7_10865001 chr3R_10865001 RAL-843 2635 chr3R 10899405 10899429 chr3R 10899532 10899536 8 124 19.5 6.5 13.0 0.6 131 chr3R 10899405 intergenic not near genes chr3R 10899470 intergenic not near genes chr3R 10899536 intergenic not near genes chr3R_8_10895001 chr3R_10895001 RAL-843 2636 chr3R 10899430 10899473 chr3R 10899527 10899599 17 110 11.0 7.5 9.2 1.7 169 chr3R 10899430 intergenic not near genes chr3R 10899514 intergenic not near genes chr3R 10899599 intergenic not near genes chr3R_17_10895001 chr3R_10895001 RAL-843 2637 chr3R 10919641 10919708 chr3R 10919769 10919836 23 125 6.5 4.0 5.2 3.7 195 chr3R 10919641 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919836 intergenic not near genes chr3R_23_10915001 chr3R_10915001 RAL-843 2638 chr3R 10920002 10920066 chr3R 10920130 10920188 23 126 4.0 9.5 6.8 2.9 186 chr3R 10920002 intergenic not near genes chr3R 10920095 intergenic not near genes chr3R 10920188 intergenic not near genes chr3R_23_10920001 chr3R_10920001 RAL-843 2639 chr3R 10957837 10957884 chr3R 10963256 10963323 Rt1c 19 5423 7.5 6.0 6.8 2.4 5486 chr3R 10957837 intergenic not near genes chr3R 10960580 intergenic not near genes chr3R 10963323 intergenic not near genes chr3R_19_10960001 chr3R_10960001 RAL-843 2640 chr3R 11047706 11047752 chr3R 11047819 11047861 11 110 4.0 7.5 5.8 1.6 155 chr3R 11047706 exon CG34114 + chr3R 11047784 exon CG34114 + chr3R 11047861 exon CG34114 + chr3R_11_11045001 chr3R_11045001 RAL-843 2641 chr3R 11085410 11085490 chr3R 11085537 11085616 9 126 5.5 2.5 4.0 1.8 206 chr3R 11085410 3` UTR CR44940 - chr3R 11085513 intergenic CR44940 - chr3R 11085616 intergenic CR44940 - chr3R_9_11085001 chr3R_11085001 RAL-843 2642 chr3R 11085737 11085798 chr3R 11086082 11086140 23 341 9.5 3.0 6.2 3.2 403 chr3R 11085737 intergenic CR44940 - chr3R 11085938 intergenic CR44940 - chr3R 11086140 intergenic not near genes chr3R_23_11085001 chr3R_11085001 RAL-843 2643 chr3R 11151074 11151143 chr3R 11151319 11151377 17 243 10.5 14.5 12.5 1.3 303 chr3R 11151074 3` UTR Ugt86Di - chr3R 11151226 3` UTR Ugt86Di - chr3R 11151377 3` UTR Ugt86Di - chr3R_17_11150001 chr3R_11150001 RAL-843 2644 chr3R 11181816 11181870 chr3R 11181996 11182050 32 178 9.0 6.0 7.5 3.8 234 chr3R 11181816 intergenic not near genes chr3R 11181933 intergenic not near genes chr3R 11182050 intergenic not near genes chr3R_32_11180001 chr3R_11180001 RAL-843 2645 chr3R 11181872 11181875 chr3R 11181994 11182054 4 164 7.5 6.0 6.8 0.5 182 chr3R 11181872 intergenic not near genes chr3R 11181963 intergenic not near genes chr3R 11182054 intergenic not near genes chr3R_4_11180001 chr3R_11180001 RAL-843 2646 chr3R 11242205 11242282 chr3R 11242344 11242383 27 136 9.0 7.5 8.2 2.9 178 chr3R 11242205 intergenic CG17734 -,scpr-A + chr3R 11242294 3` UTR CG17734 - chr3R 11242383 3` UTR CG17734 - chr3R_27_11240001 chr3R_11240001 RAL-843 2647 chr3R 11247195 11247219 chr3R 11247326 11247350 INE-1 6 131 13.5 4.0 8.8 0.6 155 chr3R 11247195 intergenic CG5214 +,CR43283 - chr3R 11247272 intergenic CR43283 -,CG5214 + chr3R 11247350 intergenic CR43283 -,CG5214 + chr3R_6_11245001 chr3R_11245001 RAL-843 2648 chr3R 11379198 11379225 chr3R 11388403 11388430 roo 10 9205 12.5 10.5 11.5 0.8 9232 chr3R 11379198 intron pros + chr3R 11383814 intron pros + chr3R 11388430 intron pros + chr3R_10_11380001 chr3R_11380001 RAL-843 2649 chr3R 11670953 11670969 chr3R 11671081 11671097 7 128 17.0 12.5 14.8 0.4 144 chr3R 11670953 exon CG42327 + chr3R 11671025 intron CG42327 + chr3R 11671097 intron CG42327 + chr3R_7_11670001 chr3R_11670001 RAL-843 2650 chr3R 11670970 11671011 chr3R 11671077 11671139 25 127 9.0 13.5 11.2 2.0 169 chr3R 11670970 exon CG42327 + chr3R 11671054 intron CG42327 + chr3R 11671139 intron CG42327 + chr3R_25_11670001 chr3R_11670001 RAL-843 2651 chr3R 11694692 11694740 chr3R 11694835 11694883 20 142 0.5 9.0 4.8 3.4 191 chr3R 11694692 intergenic Fer3 - chr3R 11694788 intergenic Fer3 - chr3R 11694883 intergenic not near genes chr3R_20_11690001 chr3R_11690001 RAL-843 2652 chr3R 11695699 11695700 chr3R 11695823 11695831 4 128 28.5 6.5 17.5 0.2 132 chr3R 11695699 intergenic not near genes chr3R 11695765 intergenic not near genes chr3R 11695831 intergenic not near genes chr3R_4_11695001 chr3R_11695001 RAL-843 2653 chr3R 11695701 11695769 chr3R 11695822 11695898 27 129 11.0 6.5 8.8 2.8 197 chr3R 11695701 intergenic not near genes chr3R 11695800 intergenic not near genes chr3R 11695898 intergenic not near genes chr3R_27_11695001 chr3R_11695001 RAL-843 2654 chr3R 11708586 11708663 chr3R 11708844 11708921 36 257 6.5 0.0 3.2 8.6 335 chr3R 11708586 intergenic not near genes chr3R 11708754 intergenic not near genes chr3R 11708921 intergenic not near genes chr3R_36_11705001 chr3R_11705001 RAL-843 2655 chr3R 11757736 11757740 chr3R 11757875 11757891 4 148 4.5 11.0 7.8 0.5 155 chr3R 11757736 intron Lk6 - chr3R 11757814 intron Lk6 - chr3R 11757891 intron Lk6 - chr3R_4_11755001 chr3R_11755001 RAL-843 2656 chr3R 11834122 11834126 chr3R 11834255 11834259 4 133 23.0 16.0 19.5 0.2 137 chr3R 11834122 intron CG6959 - chr3R 11834190 intron CG6959 - chr3R 11834259 intron CG6959 - chr3R_4_11830001 chr3R_11830001 RAL-843 2657 chr3R 11834127 11834164 chr3R 11834254 11834297 24 130 14.0 16.0 15.0 1.5 170 chr3R 11834127 intron CG6959 - chr3R 11834212 intron CG6959 - chr3R 11834297 intron CG6959 - chr3R_24_11830001 chr3R_11830001 RAL-843 2658 chr3R 11834166 11834197 chr3R 11834253 11834330 17 122 11.5 16.0 13.8 1.1 164 chr3R 11834166 intron CG6959 - chr3R 11834248 intron CG6959 - chr3R 11834330 intron CG6959 - chr3R_17_11830001 chr3R_11830001 RAL-843 2659 chr3R 11841021 11841086 chr3R 11846262 11846327 BS 28 5237 13.5 13.5 13.5 1.9 5306 chr3R 11841021 intron CG6959 - chr3R 11843674 intron CG6959 - chr3R 11846327 intron CG6959 - chr3R_28_11840001 chr3R_11840001 RAL-843 2660 chr3R 11957805 11957873 chr3R 11958138 11958206 S-element 20 330 12.0 1.5 6.8 2.6 401 chr3R 11957805 intergenic not near genes chr3R 11958006 intergenic not near genes chr3R 11958206 intergenic not near genes chr3R_20_11955001 chr3R_11955001 RAL-843 2661 chr3R 12088041 12088322 chr3R 12088173 12088466 53 137 5.5 6.0 5.8 7.8 425 chr3R 12088041 intron CG14741 - chr3R 12088254 intron CG14741 - chr3R 12088466 intron CG14741 - chr3R_53_12085001 chr3R_12085001 RAL-843 2662 chr3R 12102831 12102885 chr3R 12102976 12103001 13 137 13.5 14.0 13.8 0.9 170 chr3R 12102831 intron dpr17 + chr3R 12102916 intron dpr17 + chr3R 12103001 intron dpr17 + chr3R_13_12100001 chr3R_12100001 RAL-843 2663 chr3R 12297607 12297612 chr3R 12297734 12297737 5 126 23.0 21.5 22.2 0.2 130 chr3R 12297607 intron svp + chr3R 12297672 intron svp + chr3R 12297737 intron svp + chr3R_5_12295001 chr3R_12295001 RAL-843 2664 chr3R 12297626 12297639 chr3R 12297731 12297741 7 114 16.5 21.5 19.0 0.3 115 chr3R 12297626 intron svp + chr3R 12297684 intron svp + chr3R 12297741 intron svp + chr3R_7_12295001 chr3R_12295001 RAL-843 2665 chr3R 12328117 12328193 chr3R 12328278 12328347 25 158 6.0 5.5 5.8 3.7 230 chr3R 12328117 intergenic CR45584 + chr3R 12328232 intergenic CR45584 + chr3R 12328347 intergenic CR45584 + chr3R_25_12325001 chr3R_12325001 RAL-843 2666 chr3R 12369159 12369235 chr3R 12369333 12369350 9 151 6.5 6.5 6.5 1.2 191 chr3R 12369159 intron GstD1 - chr3R 12369254 5` UTR GstD1 - chr3R 12369350 intergenic GstD1 - chr3R_9_12365001 chr3R_12365001 RAL-843 2667 chr3R 12546414 12546422 chr3R 12546547 12546555 6 133 24.0 9.0 16.5 0.3 141 chr3R 12546414 intron Octbeta3R - chr3R 12546484 intron Octbeta3R - chr3R 12546555 intron Octbeta3R - chr3R_6_12545001 chr3R_12545001 RAL-843 2668 chr3R 12546428 12546480 chr3R 12546545 12546613 22 131 10.5 8.5 9.5 2.1 185 chr3R 12546428 intron Octbeta3R - chr3R 12546520 intron Octbeta3R - chr3R 12546613 intron Octbeta3R - chr3R_22_12545001 chr3R_12545001 RAL-843 2669 chr3R 12720688 12720760 chr3R 12720908 12720944 28 218 6.5 6.0 6.2 3.9 256 chr3R 12720688 intron Men - chr3R 12720816 intron Men - chr3R 12720944 intron Men - chr3R_28_12720001 chr3R_12720001 RAL-843 2670 chr3R 12725945 12725955 chr3R 12726054 12726109 5 139 7.5 5.5 6.5 0.7 164 chr3R 12725945 intergenic not near genes chr3R 12726027 intergenic not near genes chr3R 12726109 intergenic not near genes chr3R_5_12725001 chr3R_12725001 RAL-843 2671 chr3R 12735132 12735183 chr3R 12735432 12735482 20 298 3.0 10.0 6.5 2.7 350 chr3R 12735132 intergenic not near genes chr3R 12735307 intergenic not near genes chr3R 12735482 intergenic not near genes chr3R_20_12735001 chr3R_12735001 RAL-843 2672 chr3R 12735751 12735822 chr3R 12735899 12735969 24 146 7.0 5.0 6.0 3.4 218 chr3R 12735751 intergenic not near genes chr3R 12735860 intergenic not near genes chr3R 12735969 intergenic not near genes chr3R_24_12735001 chr3R_12735001 RAL-843 2673 chr3R 12763068 12763151 chr3R 12763206 12763278 16 130 0.0 5.0 2.5 4.6 210 chr3R 12763068 intron beat-Vc - chr3R 12763173 intron beat-Vc - chr3R 12763278 intron beat-Vc - chr3R_16_12760001 chr3R_12760001 RAL-843 2674 chr3R 12766377 12766416 chr3R 12766500 12766533 9 119 4.0 4.0 4.0 1.8 156 chr3R 12766377 intron beat-Vc - chr3R 12766455 intron beat-Vc - chr3R 12766533 intron beat-Vc - chr3R_9_12765001 chr3R_12765001 RAL-843 2675 chr3R 12766418 12766431 chr3R 12766497 12766565 4 118 3.5 3.5 3.5 0.9 147 chr3R 12766418 intron beat-Vc - chr3R 12766492 intron beat-Vc - chr3R 12766565 intron beat-Vc - chr3R_4_12765001 chr3R_12765001 RAL-843 2676 chr3R 12818981 12819050 chr3R 12819114 12819184 16 132 4.5 10.0 7.2 2.0 203 chr3R 12818981 intergenic not near genes chr3R 12819082 intergenic not near genes chr3R 12819184 intergenic not near genes chr3R_16_12815001 chr3R_12815001 RAL-843 2677 chr3R 12825778 12825845 chr3R 12825908 12825975 25 124 5.5 9.5 7.5 2.9 197 chr3R 12825778 intergenic not near genes chr3R 12825876 intergenic not near genes chr3R 12825975 intergenic not near genes chr3R_25_12825001 chr3R_12825001 RAL-843 2678 chr3R 12864535 12864580 chr3R 12865070 12865115 roo 7 535 1.5 4.5 3.0 1.8 580 chr3R 12864535 intergenic not near genes chr3R 12864825 intergenic not near genes chr3R 12865115 intergenic not near genes chr3R_7_12860001 chr3R_12860001 RAL-843 2679 chr3R 12866437 12866508 chr3R 12866638 12866709 30 201 9.0 9.0 9.0 3.0 272 chr3R 12866437 intergenic not near genes chr3R 12866573 intergenic not near genes chr3R 12866709 intergenic not near genes chr3R_30_12865001 chr3R_12865001 RAL-843 2680 chr3R 12883748 12883817 chr3R 12883917 12883986 26 168 7.5 6.0 6.8 3.3 238 chr3R 12883748 intergenic not near genes chr3R 12883867 intergenic not near genes chr3R 12883986 intergenic not near genes chr3R_26_12880001 chr3R_12880001 RAL-843 2681 chr3R 12885062 12885104 chr3R 12885215 12885261 18 157 11.0 8.0 9.5 1.7 199 chr3R 12885062 intergenic not near genes chr3R 12885162 intergenic not near genes chr3R 12885261 intergenic not near genes chr3R_18_12885001 chr3R_12885001 RAL-843 2682 chr3R 12885105 12885133 chr3R 12885211 12885290 13 151 6.0 7.5 6.8 1.7 185 chr3R 12885105 intergenic not near genes chr3R 12885198 intergenic not near genes chr3R 12885290 intergenic not near genes chr3R_13_12885001 chr3R_12885001 RAL-843 2683 chr3R 12894591 12894625 chr3R 12894754 12894790 6 163 0.0 8.0 4.0 1.2 199 chr3R 12894591 intergenic not near genes chr3R 12894690 intergenic not near genes chr3R 12894790 intergenic not near genes chr3R_6_12890001 chr3R_12890001 RAL-843 2684 chr3R 12920112 12920131 chr3R 12925365 12925384 copia 6 5252 14.5 6.5 10.5 0.5 5272 chr3R 12920112 intron beat-Vb + chr3R 12922748 intron beat-Vb + chr3R 12925384 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-843 2685 chr3R 12920135 12920177 chr3R 12925364 12925406 copia 17 5248 4.5 6.0 5.2 2.7 5271 chr3R 12920135 intron beat-Vb + chr3R 12922770 intron beat-Vb + chr3R 12925406 intron beat-Vb + chr3R_17_12920001 chr3R_12920001 RAL-843 2686 chr3R 12935308 12935320 chr3R 12935461 12935474 8 153 17.0 0.0 8.5 0.8 166 chr3R 12935308 intergenic beat-Vb + chr3R 12935391 intergenic not near genes chr3R 12935474 intergenic not near genes chr3R_8_12935001 chr3R_12935001 RAL-843 2687 chr3R 12947247 12947317 chr3R 12947459 12947529 20 211 4.5 10.0 7.2 2.4 282 chr3R 12947247 intergenic not near genes chr3R 12947388 intergenic not near genes chr3R 12947529 intergenic not near genes chr3R_20_12945001 chr3R_12945001 RAL-843 2688 chr3R 12972509 12972584 chr3R 12972697 12972773 38 189 9.0 6.0 7.5 4.5 264 chr3R 12972509 intron CG7381 - chr3R 12972641 intron CG7381 - chr3R 12972773 intron CG7381 - chr3R_38_12970001 chr3R_12970001 RAL-843 2689 chr3R 13059917 13059976 chr3R 13060162 13060174 20 243 3.5 8.0 5.8 2.9 257 chr3R 13059917 intron sim + chr3R 13060046 intron sim + chr3R 13060174 intron sim + chr3R_20_13060001 chr3R_13060001 RAL-843 2690 chr3R 13064733 13064794 chr3R 13064882 13064941 15 148 0.0 0.0 0.0 15.0 208 chr3R 13064733 intron sim + chr3R 13064837 intron sim + chr3R 13064941 intron sim + chr3R_15_13060001 chr3R_13060001 RAL-843 2691 chr3R 13066955 13067008 chr3R 13067092 13067145 26 136 9.5 5.0 7.2 3.2 190 chr3R 13066955 intron sim + chr3R 13067050 intron sim + chr3R 13067145 intron sim + chr3R_26_13065001 chr3R_13065001 RAL-843 2692 chr3R 13067792 13067870 chr3R 13067922 13067990 42 123 8.5 11.0 9.8 3.9 198 chr3R 13067792 intron sim + chr3R 13067891 intron sim + chr3R 13067990 intron sim + chr3R_42_13065001 chr3R_13065001 RAL-843 2693 chr3R 13075314 13075373 chr3R 13075445 13075504 18 130 10.0 5.5 7.8 2.0 190 chr3R 13075314 intron sim + chr3R 13075409 intron sim + chr3R 13075504 intron sim + chr3R_18_13075001 chr3R_13075001 RAL-843 2694 chr3R 13135788 13135852 chr3R 13138003 13138067 pogo 15 2215 3.5 7.0 5.2 2.4 2279 chr3R 13135788 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136928 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138067 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_15_13135001 chr3R_13135001 RAL-843 2695 chr3R 13138275 13138347 chr3R 13138414 13138469 19 132 3.5 4.0 3.8 4.0 194 chr3R 13138275 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138372 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138469 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_19_13135001 chr3R_13135001 RAL-843 2696 chr3R 13142989 13143058 chr3R 13148615 13148684 mdg3 30 5624 5.0 12.0 8.5 3.2 5695 chr3R 13142989 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145836 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148684 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_30_13145001 chr3R_13145001 RAL-843 2697 chr3R 13151311 13151393 chr3R 13151491 13151567 10 171 0.0 9.5 4.8 1.7 256 chr3R 13151311 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151439 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13151567 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_10_13150001 chr3R_13150001 RAL-843 2698 chr3R 13314057 13314115 chr3R 13318894 13318953 Doc 21 4837 8.0 9.0 8.5 2.2 4896 chr3R 13314057 intergenic not near genes chr3R 13316505 intergenic not near genes chr3R 13318953 intergenic CG45080 - chr3R_21_13315001 chr3R_13315001 RAL-843 2699 chr3R 13418620 13418681 chr3R 13418746 13418807 29 126 9.0 5.5 7.2 3.5 187 chr3R 13418620 intergenic not near genes chr3R 13418714 intergenic not near genes chr3R 13418807 intergenic not near genes chr3R_29_13415001 chr3R_13415001 RAL-843 2700 chr3R 13435346 13435418 chr3R 13435571 13435641 35 225 3.5 7.5 5.5 5.4 295 chr3R 13435346 intergenic yrt - chr3R 13435494 intergenic not near genes chr3R 13435641 intergenic not near genes chr3R_35_13435001 chr3R_13435001 RAL-843 2701 chr3R 13444426 13444486 chr3R 13444559 13444619 14 133 7.5 7.5 7.5 1.6 193 chr3R 13444426 intergenic CR45679 - chr3R 13444522 intergenic CR45679 - chr3R 13444619 intergenic not near genes chr3R_14_13440001 chr3R_13440001 RAL-843 2702 chr3R 13484804 13484858 chr3R 13484936 13484996 37 143 6.0 12.0 9.0 3.7 192 chr3R 13484804 intergenic not near genes chr3R 13484900 intergenic not near genes chr3R 13484996 intergenic not near genes chr3R_37_13480001 chr3R_13480001 RAL-843 2703 chr3R 13487482 13487485 chr3R 19199405 19199408 5 5711923 27.0 27.0 27.0 0.2 5711926 chr3R 13487482 intergenic not near genes chr3R 16343445 exon pad + chr3R 19199408 intron CG31475 + chr3R_5_16340001 chr3R_16340001 RAL-843 2704 chr3R 13517181 13517252 chr3R 13520048 13520094 jockey 4 2860 8.0 0.0 4.0 0.8 2913 chr3R 13517181 intergenic not near genes chr3R 13518638 intergenic not near genes chr3R 13520094 intergenic not near genes chr3R_4_13515001 chr3R_13515001 RAL-843 2705 chr3R 13525138 13525339 chr3R 13525270 13525464 18 130 14.0 9.0 11.5 1.4 326 chr3R 13525138 intergenic not near genes chr3R 13525301 intergenic not near genes chr3R 13525464 intergenic not near genes chr3R_18_13525001 chr3R_13525001 RAL-843 2706 chr3R 13568440 13568459 chr3R 13568567 13568583 9 124 16.0 14.5 15.2 0.6 143 chr3R 13568440 intergenic not near genes chr3R 13568512 intergenic not near genes chr3R 13568583 intergenic not near genes chr3R_9_13565001 chr3R_13565001 RAL-843 2707 chr3R 13580789 13580826 chr3R 13580922 13580959 15 131 13.0 14.5 13.8 1.0 170 chr3R 13580789 intergenic not near genes chr3R 13580874 intergenic not near genes chr3R 13580959 intergenic not near genes chr3R_15_13580001 chr3R_13580001 RAL-843 2708 chr3R 13599048 13599205 chr3R 13599185 13599366 16 149 0.5 0.0 0.2 13.3 318 chr3R 13599048 intergenic not near genes chr3R 13599207 intergenic not near genes chr3R 13599366 intergenic not near genes chr3R_16_13595001 chr3R_13595001 RAL-843 2709 chr3R 13603013 13603077 chr3R 13603154 13603218 29 140 7.0 8.0 7.5 3.4 205 chr3R 13603013 intergenic not near genes chr3R 13603116 intergenic not near genes chr3R 13603218 intergenic not near genes chr3R_29_13600001 chr3R_13600001 RAL-843 2710 chr3R 13606670 13606725 chr3R 13606867 13606922 16 195 6.5 6.0 6.2 2.2 252 chr3R 13606670 intergenic CG9759 - chr3R 13606796 intergenic CG9759 - chr3R 13606922 intergenic CG9759 - chr3R_16_13605001 chr3R_13605001 RAL-843 2711 chr3R 13625657 13625719 chr3R 13625788 13625850 15 131 9.0 9.5 9.2 1.5 193 chr3R 13625657 intergenic not near genes chr3R 13625754 intergenic not near genes chr3R 13625850 intergenic not near genes chr3R_15_13625001 chr3R_13625001 RAL-843 2712 chr3R 13659742 13659846 chr3R 13659934 13659984 6 165 0.0 0.5 0.2 5.0 242 chr3R 13659742 intron Hrb87F - chr3R 13659863 intron Hrb87F - chr3R 13659984 intron Hrb87F - chr3R_6_13655001 chr3R_13655001 RAL-843 2713 chr3R 13672900 13672916 chr3R 13673028 13673044 5 127 14.0 10.0 12.0 0.4 144 chr3R 13672900 intron Task6 - chr3R 13672972 intron Task6 - chr3R 13673044 intron Task6 - chr3R_5_13670001 chr3R_13670001 RAL-843 2714 chr3R 13672918 13672968 chr3R 13673022 13673096 40 125 5.5 9.5 7.5 4.7 178 chr3R 13672918 intron Task6 - chr3R 13673007 intron Task6 - chr3R 13673096 intron Task6 - chr3R_40_13670001 chr3R_13670001 RAL-843 2715 chr3R 13692743 13692761 chr3R 13692871 13692889 5 127 16.5 16.0 16.2 0.3 146 chr3R 13692743 3` UTR flfl + chr3R 13692816 3` UTR flfl + chr3R 13692889 3` UTR flfl + chr3R_5_13690001 chr3R_13690001 RAL-843 2716 chr3R 13692763 13692808 chr3R 13692868 13692936 23 126 6.0 15.5 10.8 1.9 173 chr3R 13692763 3` UTR flfl + chr3R 13692850 3` UTR flfl + chr3R 13692936 3` UTR flfl + chr3R_23_13690001 chr3R_13690001 RAL-843 2717 chr3R 13693028 13693028 chr3R 21907534 21907536 9 8214507 36.5 34.0 35.2 0.2 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_9_17800001 chr3R_17800001 RAL-843 2718 chr3R 13782014 13782075 chr3R 13782145 13782206 24 130 4.5 5.0 4.8 4.1 192 chr3R 13782014 exon CG9286 + chr3R 13782110 intergenic CG9286 +,Dip-B + chr3R 13782206 intergenic Dip-B +,CG9286 + chr3R_24_13780001 chr3R_13780001 RAL-843 2719 chr3R 13850260 13850340 chr3R 13850405 13850467 27 141 0.0 2.5 1.2 12.3 207 chr3R 13850260 intergenic not near genes chr3R 13850364 intergenic not near genes chr3R 13850467 intergenic not near genes chr3R_27_13850001 chr3R_13850001 RAL-843 2720 chr3R 13863637 13863650 chr3R 13863775 13863788 6 138 25.5 10.0 17.8 0.3 151 chr3R 13863637 intergenic not near genes chr3R 13863712 intergenic not near genes chr3R 13863788 intergenic not near genes chr3R_6_13860001 chr3R_13860001 RAL-843 2721 chr3R 13863651 13863703 chr3R 13863769 13863841 27 135 10.5 7.5 9.0 2.7 190 chr3R 13863651 intergenic not near genes chr3R 13863746 intergenic not near genes chr3R 13863841 intergenic not near genes chr3R_27_13860001 chr3R_13860001 RAL-843 2722 chr3R 13909893 13909907 chr3R 13910003 13910037 10 125 6.5 9.0 7.8 1.1 144 chr3R 13909893 intergenic not near genes chr3R 13909965 intergenic not near genes chr3R 13910037 intergenic not near genes chr3R_10_13905001 chr3R_13905001 RAL-843 2723 chr3R 13935266 13935314 chr3R 13935376 13935392 7 88 13.0 9.0 11.0 0.6 126 chr3R 13935266 intergenic not near genes chr3R 13935329 intergenic not near genes chr3R 13935392 intergenic not near genes chr3R_7_13935001 chr3R_13935001 RAL-843 2724 chr3R 13974470 13974492 chr3R 13974597 13974619 14 127 7.0 8.5 7.8 1.6 149 chr3R 13974470 intron,5` UTR rdx -,CR43460 + chr3R 13974544 intron,5` UTR rdx -,CR43460 + chr3R 13974619 intron,5` UTR rdx -,CR43460 + chr3R_14_13970001 chr3R_13970001 RAL-843 2725 chr3R 13994260 13994320 chr3R 13994563 13994625 20 305 8.5 5.0 6.8 2.6 365 chr3R 13994260 intron rdx - chr3R 13994442 intron rdx - chr3R 13994625 intron rdx - chr3R_20_13990001 chr3R_13990001 RAL-843 2726 chr3R 14014301 14014305 chr3R 14014489 14014494 4 189 5.0 8.0 6.5 0.5 193 chr3R 14014301 intron rdx - chr3R 14014398 intron rdx - chr3R 14014494 intron rdx - chr3R_4_14010001 chr3R_14010001 RAL-843 2727 chr3R 14021600 14021680 chr3R 14023467 14023546 S-element 39 1866 7.5 10.5 9.0 3.9 1946 chr3R 14021600 intron rdx - chr3R 14022573 intron rdx - chr3R 14023546 intron rdx - chr3R_39_14020001 chr3R_14020001 RAL-843 2728 chr3R 14029814 14029865 chr3R 14029952 14030003 23 138 9.5 16.5 13.0 1.6 189 chr3R 14029814 intron,intron rdx -,Cyp6d5 + chr3R 14029908 intron,intron rdx -,Cyp6d5 + chr3R 14030003 intron,intron rdx -,Cyp6d5 + chr3R_23_14025001 chr3R_14025001 RAL-843 2729 chr3R 14037536 14037576 chr3R 14037667 14037690 14 128 12.0 0.5 6.2 1.9 154 chr3R 14037536 intergenic not near genes chr3R 14037613 intergenic not near genes chr3R 14037690 intergenic not near genes chr3R_14_14035001 chr3R_14035001 RAL-843 2730 chr3R 14067093 14067137 chr3R 14067222 14067266 14 128 5.0 5.5 5.2 2.3 173 chr3R 14067093 exon foxo + chr3R 14067180 intron foxo + chr3R 14067266 intron foxo + chr3R_14_14065001 chr3R_14065001 RAL-843 2731 chr3R 14077582 14077642 chr3R 14077709 14077769 24 127 7.0 9.0 8.0 2.7 187 chr3R 14077582 intron foxo + chr3R 14077676 intron foxo + chr3R 14077769 intron foxo + chr3R_24_14075001 chr3R_14075001 RAL-843 2732 chr3R 14089537 14089541 chr3R 14089676 14089680 4 139 11.0 8.0 9.5 0.4 143 chr3R 14089537 5` UTR Npc2b + chr3R 14089608 intron Npc2b + chr3R 14089680 intron Npc2b + chr3R_4_14085001 chr3R_14085001 RAL-843 2733 chr3R 14098628 14098707 chr3R 14098757 14098790 36 117 17.0 10.0 13.5 2.5 162 chr3R 14098628 intergenic not near genes chr3R 14098709 intergenic not near genes chr3R 14098790 intergenic not near genes chr3R_36_14095001 chr3R_14095001 RAL-843 2734 chr3R 14169816 14169869 chr3R 14169947 14170000 15 130 6.5 7.0 6.8 1.9 184 chr3R 14169816 3` UTR Dop1R1 - chr3R 14169908 3` UTR Dop1R1 - chr3R 14170000 3` UTR Dop1R1 - chr3R_15_14165001 chr3R_14165001 RAL-843 2735 chr3R 14180766 14180828 chr3R 14185581 14185643 F-element 27 4815 7.0 11.5 9.2 2.6 4877 chr3R 14180766 intron Dop1R1 - chr3R 14183204 intron Dop1R1 - chr3R 14185643 intron Dop1R1 - chr3R_27_14180001 chr3R_14180001 RAL-843 2736 chr3R 14194385 14194451 chr3R 14203584 14203650 roo 22 9199 9.0 9.0 9.0 2.2 9265 chr3R 14194385 intron Dop1R1 - chr3R 14199018 intron Dop1R1 - chr3R 14203650 intron Dop1R1 - chr3R_22_14195001 chr3R_14195001 RAL-843 2737 chr3R 14220112 14220158 chr3R 14220225 14220295 32 131 10.5 8.5 9.5 3.0 183 chr3R 14220112 exon CG31326 - chr3R 14220204 5` UTR CG31326 - chr3R 14220295 intergenic CG31326 -,CG33109 - chr3R_32_14220001 chr3R_14220001 RAL-843 2738 chr3R 14246352 14246417 chr3R 14247898 14247959 jockey 20 1539 10.0 9.0 9.5 1.9 1607 chr3R 14246352 intergenic not near genes chr3R 14247156 intergenic not near genes chr3R 14247959 intergenic not near genes chr3R_20_14245001 chr3R_14245001 RAL-843 2739 chr3R 14248690 14248735 chr3R 14248818 14248863 15 128 4.0 5.0 4.5 2.7 173 chr3R 14248690 intergenic not near genes chr3R 14248776 intergenic not near genes chr3R 14248863 intergenic not near genes chr3R_15_14245001 chr3R_14245001 RAL-843 2740 chr3R 14364013 14364088 chr3R 14364139 14364201 23 122 9.5 14.5 12.0 1.8 188 chr3R 14364013 intron NK7.1 - chr3R 14364107 intron NK7.1 - chr3R 14364201 intron NK7.1 - chr3R_23_14360001 chr3R_14360001 RAL-843 2741 chr3R 14386168 14386234 chr3R 14386298 14386368 8 134 0.0 6.0 3.0 2.0 200 chr3R 14386168 intergenic not near genes chr3R 14386268 intergenic not near genes chr3R 14386368 intergenic not near genes chr3R_8_14385001 chr3R_14385001 RAL-843 2742 chr3R 14455874 14455917 chr3R 14456003 14456039 16 152 9.5 8.0 8.8 1.6 165 chr3R 14455874 intron cv-c - chr3R 14455956 intron cv-c - chr3R 14456039 intron cv-c - chr3R_16_14455001 chr3R_14455001 RAL-843 2743 chr3R 14504969 14504990 chr3R 14505095 14505105 roo 5 122 14.5 15.5 15.0 0.3 136 chr3R 14504969 intron CR44177 + chr3R 14505037 intron CR44177 + chr3R 14505105 intron CR44177 + chr3R_5_14505001 chr3R_14505001 RAL-843 2744 chr3R 14546737 14546806 chr3R 14546873 14546942 31 130 6.5 8.5 7.5 3.6 205 chr3R 14546737 intron Pde6 - chr3R 14546840 intron Pde6 - chr3R 14546942 intron Pde6 - chr3R_31_14545001 chr3R_14545001 RAL-843 2745 chr3R 14556537 14556613 chr3R 14556678 14556754 34 141 7.5 0.0 3.8 7.1 217 chr3R 14556537 intron Pde6 - chr3R 14556646 intron Pde6 - chr3R 14556754 intron Pde6 - chr3R_34_14555001 chr3R_14555001 RAL-843 2746 chr3R 14608420 14608477 chr3R 14608562 14608619 21 141 3.5 5.5 4.5 3.8 199 chr3R 14608420 intergenic stumps + chr3R 14608520 intergenic stumps + chr3R 14608619 intergenic not near genes chr3R_21_14605001 chr3R_14605001 RAL-843 2747 chr3R 14631214 14631279 chr3R 14631342 14631399 28 126 10.5 9.5 10.0 2.5 185 chr3R 14631214 intron,intron CG7886 -,Cad88C + chr3R 14631306 intron,intron CG7886 -,Cad88C + chr3R 14631399 intron,intron CG7886 -,Cad88C + chr3R_28_14630001 chr3R_14630001 RAL-843 2748 chr3R 14664835 14664899 chr3R 14664962 14665026 30 127 9.0 13.5 11.2 2.5 191 chr3R 14664835 intergenic BigH1 +,Meltrin - chr3R 14664930 3` UTR Meltrin - chr3R 14665026 3` UTR Meltrin - chr3R_30_14660001 chr3R_14660001 RAL-843 2749 chr3R 14745796 14745824 chr3R 14745922 14745950 5 126 3.0 0.0 1.5 2.0 154 chr3R 14745796 intron jvl + chr3R 14745873 intron jvl + chr3R 14745950 intron jvl + chr3R_5_14745001 chr3R_14745001 RAL-843 2750 chr3R 14764527 14764575 chr3R 14764668 14764718 14 142 5.5 8.0 6.8 1.8 191 chr3R 14764527 intron jvl + chr3R 14764622 intron jvl + chr3R 14764718 intron jvl + chr3R_14_14760001 chr3R_14760001 RAL-843 2751 chr3R 14787085 14787139 chr3R 14787549 14787603 19 460 12.0 9.0 10.5 1.7 518 chr3R 14787085 intron jvl + chr3R 14787344 intron jvl + chr3R 14787603 intron jvl + chr3R_19_14785001 chr3R_14785001 RAL-843 2752 chr3R 14842226 14842278 chr3R 14842360 14842412 23 134 6.5 7.5 7.0 2.9 186 chr3R 14842226 intron btsz - chr3R 14842319 intron btsz - chr3R 14842412 intron btsz - chr3R_23_14840001 chr3R_14840001 RAL-843 2753 chr3R 14874327 14874362 chr3R 14874456 14874473 7 123 11.5 26.0 18.8 0.4 146 chr3R 14874327 intron btsz - chr3R 14874400 intron btsz - chr3R 14874473 intron btsz - chr3R_7_14870001 chr3R_14870001 RAL-843 2754 chr3R 14898428 14898489 chr3R 14898598 14898659 20 170 5.5 6.5 6.0 2.9 231 chr3R 14898428 intergenic Nup93-2 -,CG3817 + chr3R 14898544 intergenic Nup93-2 -,CG3817 + chr3R 14898659 intergenic CG3817 +,Nup93-2 - chr3R_20_14895001 chr3R_14895001 RAL-843 2755 chr3R 14944852 14944889 chr3R 14944991 14945028 15 136 6.5 8.5 7.5 1.8 176 chr3R 14944852 intergenic not near genes chr3R 14944940 intergenic not near genes chr3R 14945028 intergenic not near genes chr3R_15_14940001 chr3R_14940001 RAL-843 2756 chr3R 14954764 14954839 chr3R 14955026 14955079 15 260 2.5 8.0 5.2 2.4 315 chr3R 14954764 intergenic not near genes chr3R 14954922 intergenic not near genes chr3R 14955079 intergenic not near genes chr3R_15_14950001 chr3R_14950001 RAL-843 2757 chr3R 14974237 14974294 chr3R 14974343 14974420 12 122 6.5 0.5 3.5 2.7 183 chr3R 14974237 intergenic not near genes chr3R 14974328 intergenic not near genes chr3R 14974420 intergenic not near genes chr3R_12_14970001 chr3R_14970001 RAL-843 2758 chr3R 15010277 15010318 chr3R 15010568 15010609 5 288 3.5 2.5 3.0 1.2 332 chr3R 15010277 intergenic not near genes chr3R 15010443 intergenic not near genes chr3R 15010609 intergenic not near genes chr3R_5_15010001 chr3R_15010001 RAL-843 2759 chr3R 15041358 15041419 chr3R 15045192 15045253 Doc 9 3834 0.0 6.5 3.2 2.1 3895 chr3R 15041358 intergenic not near genes chr3R 15043306 intergenic not near genes chr3R 15045253 intergenic not near genes chr3R_9_15040001 chr3R_15040001 RAL-843 2760 chr3R 15059230 15059481 chr3R 15059474 15059618 BS 22 216 0.0 0.0 0.0 22.0 388 chr3R 15059230 intron dpr9 - chr3R 15059424 intron dpr9 - chr3R 15059618 intron dpr9 - chr3R_22_15055001 chr3R_15055001 RAL-843 2761 chr3R 15088053 15088103 chr3R 15088198 15088251 19 146 11.5 9.0 10.2 1.7 198 chr3R 15088053 intron CG6966 - chr3R 15088152 intron CG6966 - chr3R 15088251 intron CG6966 - chr3R_19_15085001 chr3R_15085001 RAL-843 2762 chr3R 15102464 15102531 chr3R 15109772 15109835 412 20 7308 8.5 9.5 9.0 2.0 7371 chr3R 15102464 intron CG42788 - chr3R 15106150 intron CG42788 - chr3R 15109835 intron CG42788 - chr3R_20_15105001 chr3R_15105001 RAL-843 2763 chr3R 15114865 15114896 chr3R 15114992 15115023 12 127 14.5 9.0 11.8 0.9 158 chr3R 15114865 intron CG42788 - chr3R 15114944 intron CG42788 - chr3R 15115023 intron CG42788 - chr3R_12_15110001 chr3R_15110001 RAL-843 2764 chr3R 15119494 15119502 chr3R 15119625 15119628 5 130 13.5 10.5 12.0 0.4 134 chr3R 15119494 intron CG42788 - chr3R 15119561 intron CG42788 - chr3R 15119628 intron CG42788 - chr3R_5_15115001 chr3R_15115001 RAL-843 2765 chr3R 15119518 15119562 chr3R 15119618 15119687 16 118 5.0 9.5 7.2 2.0 169 chr3R 15119518 intron CG42788 - chr3R 15119602 intron CG42788 - chr3R 15119687 intron CG42788 - chr3R_16_15115001 chr3R_15115001 RAL-843 2766 chr3R 15132029 15132040 chr3R 15135136 15135150 Juan 6 3110 22.5 13.5 18.0 0.3 3121 chr3R 15132029 intergenic CG42788 - chr3R 15133590 intergenic not near genes chr3R 15135150 3` UTR CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-843 2767 chr3R 15132041 15132065 chr3R 15135133 15135175 Juan 14 3108 16.0 13.0 14.5 0.9 3134 chr3R 15132041 intergenic CG42788 - chr3R 15133608 intergenic not near genes chr3R 15135175 3` UTR CG6912 - chr3R_14_15130001 chr3R_15130001 RAL-843 2768 chr3R 15145536 15145540 chr3R 15145675 15145679 5 139 11.0 5.0 8.0 0.6 143 chr3R 15145536 intron GlyS - chr3R 15145608 intron GlyS - chr3R 15145679 intron GlyS - chr3R_5_15145001 chr3R_15145001 RAL-843 2769 chr3R 15162499 15162522 chr3R 15167317 15167340 F-element 13 4816 22.5 7.5 15.0 0.8 4841 chr3R 15162499 intron Gyc88E + chr3R 15164920 intron Gyc88E + chr3R 15167340 intron Gyc88E + chr3R_13_15160001 chr3R_15160001 RAL-843 2770 chr3R 15162523 15162563 chr3R 15167315 15167381 F-element 9 4815 9.5 6.5 8.0 1.0 4858 chr3R 15162523 intron Gyc88E + chr3R 15164952 intron Gyc88E + chr3R 15167381 intron Gyc88E + chr3R_9_15160001 chr3R_15160001 RAL-843 2771 chr3R 15190610 15190677 chr3R 15190785 15190853 27 173 4.5 11.0 7.8 3.1 243 chr3R 15190610 3` UTR Gyc88E + chr3R 15190732 3` UTR Gyc88E + chr3R 15190853 3` UTR Gyc88E + chr3R_27_15190001 chr3R_15190001 RAL-843 2772 chr3R 15286984 15286988 chr3R 21907534 21907535 6 6620548 32.0 34.0 33.0 0.2 6620551 chr3R 15286984 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907535 intergenic CG6678 + chr3R_6_18595001 chr3R_18595001 RAL-843 2773 chr3R 15406095 15406160 chr3R 15406226 15406286 26 130 11.0 9.0 10.0 2.4 191 chr3R 15406095 intron CG6125 - chr3R 15406190 intron CG6125 - chr3R 15406286 intron CG6125 - chr3R_26_15405001 chr3R_15405001 RAL-843 2774 chr3R 15416206 15416281 chr3R 15416336 15416369 21 126 9.0 11.0 10.0 1.9 163 chr3R 15416206 3` UTR Atx2 + chr3R 15416288 3` UTR Atx2 + chr3R 15416369 3` UTR Atx2 + chr3R_21_15415001 chr3R_15415001 RAL-843 2775 chr3R 15571201 15571236 chr3R 15571358 15571393 9 157 5.5 11.0 8.2 1.0 192 chr3R 15571201 intergenic not near genes chr3R 15571297 intergenic not near genes chr3R 15571393 intergenic not near genes chr3R_9_15570001 chr3R_15570001 RAL-843 2776 chr3R 15571249 15571494 chr3R 15571347 15571635 33 140 9.0 8.0 8.5 3.5 386 chr3R 15571249 intergenic not near genes chr3R 15571442 intergenic not near genes chr3R 15571635 intergenic not near genes chr3R_33_15570001 chr3R_15570001 RAL-843 2777 chr3R 15576389 15576406 chr3R 15576522 15576539 8 133 5.0 6.5 5.8 1.2 150 chr3R 15576389 intergenic not near genes chr3R 15576464 intergenic not near genes chr3R 15576539 intergenic not near genes chr3R_8_15575001 chr3R_15575001 RAL-843 2778 chr3R 15601126 15601194 chr3R 15608698 15608736 412 26 7570 10.0 9.5 9.8 2.4 7610 chr3R 15601126 intergenic not near genes chr3R 15604931 intergenic not near genes chr3R 15608736 intergenic not near genes chr3R_26_15600001 chr3R_15600001 RAL-843 2779 chr3R 15610523 15610592 chr3R 15610649 15610661 10 120 1.0 9.0 5.0 1.7 138 chr3R 15610523 intergenic not near genes chr3R 15610592 intergenic not near genes chr3R 15610661 intergenic not near genes chr3R_10_15610001 chr3R_15610001 RAL-843 2780 chr3R 15618704 15618761 chr3R 15626228 15626285 blood 18 7521 7.5 13.0 10.2 1.6 7581 chr3R 15618704 intergenic not near genes chr3R 15622494 intergenic not near genes chr3R 15626285 intergenic not near genes chr3R_18_15620001 chr3R_15620001 RAL-843 2781 chr3R 15636480 15636489 chr3R 15636706 15636715 4 226 7.0 0.0 3.5 0.9 235 chr3R 15636480 exon CG43335 + chr3R 15636598 intergenic CG43335 + chr3R 15636715 intergenic CG43335 +,CG43336 + chr3R_4_15635001 chr3R_15635001 RAL-843 2782 chr3R 15639294 15639305 chr3R 15639630 15639641 7 334 19.0 1.0 10.0 0.6 347 chr3R 15639294 intergenic not near genes chr3R 15639468 intergenic not near genes chr3R 15639641 intergenic not near genes chr3R_7_15635001 chr3R_15635001 RAL-843 2783 chr3R 15639311 15639357 chr3R 15639625 15639693 16 331 7.5 1.0 4.2 3.1 382 chr3R 15639311 intergenic not near genes chr3R 15639502 intergenic not near genes chr3R 15639693 intergenic not near genes chr3R_16_15635001 chr3R_15635001 RAL-843 2784 chr3R 15691134 15691300 chr3R 15691289 15691437 26 151 0.0 0.0 0.0 26.0 303 chr3R 15691134 intergenic not near genes chr3R 15691286 intergenic not near genes chr3R 15691437 intergenic not near genes chr3R_26_15690001 chr3R_15690001 RAL-843 2785 chr3R 15708267 15708283 chr3R 15708416 15708432 7 149 0.0 5.0 2.5 2.0 165 chr3R 15708267 3` UTR CG5404 + chr3R 15708350 3` UTR CG5404 + chr3R 15708432 3` UTR CG5404 + chr3R_7_15705001 chr3R_15705001 RAL-843 2786 chr3R 15709589 15709655 chr3R 15709768 15709834 22 174 6.0 8.5 7.2 2.7 245 chr3R 15709589 intergenic not near genes chr3R 15709712 intergenic not near genes chr3R 15709834 intergenic not near genes chr3R_22_15705001 chr3R_15705001 RAL-843 2787 chr3R 15711232 15711278 chr3R 15711356 15711407 11 128 15.0 15.0 15.0 0.7 175 chr3R 15711232 intergenic not near genes chr3R 15711320 intergenic not near genes chr3R 15711407 intergenic not near genes chr3R_11_15710001 chr3R_15710001 RAL-843 2788 chr3R 15718377 15718448 chr3R 15724756 15724828 21 6379 25.5 20.0 22.8 0.9 6451 chr3R 15718377 intergenic not near genes chr3R 15721602 intergenic not near genes chr3R 15724828 intergenic not near genes chr3R_21_15720001 chr3R_15720001 RAL-843 2789 chr3R 15718265 15718321 chr3R 15724870 15724926 14 6605 37.0 27.5 32.2 0.4 6661 chr3R 15718265 intergenic not near genes chr3R 15721596 intergenic not near genes chr3R 15724926 intergenic not near genes chr3R_14_15720001 chr3R_15720001 RAL-843 2790 chr3R 15735193 15735237 chr3R 15739963 15740007 F-element 15 4770 6.5 10.0 8.2 1.6 4814 chr3R 15735193 intergenic not near genes chr3R 15737600 intergenic not near genes chr3R 15740007 intergenic not near genes chr3R_15_15735001 chr3R_15735001 RAL-843 2791 chr3R 15779607 15779669 chr3R 15779738 15779800 15 131 8.0 10.5 9.2 1.5 193 chr3R 15779607 intergenic CG5614 + chr3R 15779704 intergenic CG5614 + chr3R 15779800 intergenic CG5614 + chr3R_15_15775001 chr3R_15775001 RAL-843 2792 chr3R 15790089 15790163 chr3R 15790247 15790386 27 165 39.0 29.5 34.2 0.8 297 chr3R 15790089 exon c(3)G - chr3R 15790238 intron c(3)G - chr3R 15790386 exon c(3)G - chr3R_27_15790001 chr3R_15790001 RAL-843 2793 chr3R 15790253 15790395 chr3R 15790574 15790651 25 307 33.5 45.0 39.2 0.6 398 chr3R 15790253 exon c(3)G - chr3R 15790452 exon c(3)G - chr3R 15790651 exon c(3)G - chr3R_25_15790001 chr3R_15790001 RAL-843 2794 chr3R 15790795 15790859 chr3R 15790961 15791024 20 166 42.5 38.5 40.5 0.5 229 chr3R 15790795 exon c(3)G - chr3R 15790910 intron c(3)G - chr3R 15791024 exon c(3)G - chr3R_20_15790001 chr3R_15790001 RAL-843 2795 chr3R 15878050 15878102 chr3R 15878188 15878239 20 138 6.5 8.5 7.5 2.4 189 chr3R 15878050 intergenic not near genes chr3R 15878144 intergenic not near genes chr3R 15878239 intergenic not near genes chr3R_20_15875001 chr3R_15875001 RAL-843 2796 chr3R 15891617 15891679 chr3R 15892059 15892110 24 440 8.0 7.0 7.5 2.8 493 chr3R 15891617 intron CG14877 - chr3R 15891864 intron CG14877 - chr3R 15892110 intron CG14877 - chr3R_24_15890001 chr3R_15890001 RAL-843 2797 chr3R 15924877 15924955 chr3R 15925015 15925093 12 138 11.0 3.5 7.2 1.5 216 chr3R 15924877 intron CG4221 + chr3R 15924985 intron CG4221 + chr3R 15925093 intron CG4221 + chr3R_12_15920001 chr3R_15920001 RAL-843 2798 chr3R 16033362 16033426 chr3R 16033493 16033557 25 131 9.0 6.0 7.5 2.9 195 chr3R 16033362 intron pnr + chr3R 16033460 intron pnr + chr3R 16033557 intron pnr + chr3R_25_16030001 chr3R_16030001 RAL-843 2799 chr3R 16128392 16128404 chr3R 16128527 16128539 6 135 11.0 5.5 8.2 0.7 147 chr3R 16128392 intron Sb + chr3R 16128466 intron Sb + chr3R 16128539 intron Sb + chr3R_6_16125001 chr3R_16125001 RAL-843 2800 chr3R 16128405 16128450 chr3R 16128523 16128585 16 128 5.0 4.5 4.8 2.8 180 chr3R 16128405 intron Sb + chr3R 16128495 intron Sb + chr3R 16128585 intron Sb + chr3R_16_16125001 chr3R_16125001 RAL-843 2801 chr3R 16225040 16225116 chr3R 16225175 16225250 32 134 9.0 0.0 4.5 5.8 210 chr3R 16225040 intergenic not near genes chr3R 16225145 intergenic not near genes chr3R 16225250 intergenic tara + chr3R_32_16225001 chr3R_16225001 RAL-843 2802 chr3R 16226760 16226774 chr3R 16226888 16226902 8 127 9.0 17.5 13.2 0.6 142 chr3R 16226760 intron tara + chr3R 16226831 intron tara + chr3R 16226902 intron tara + chr3R_8_16225001 chr3R_16225001 RAL-843 2803 chr3R 16246474 16246553 chr3R 16246600 16246679 18 126 5.5 8.5 7.0 2.2 205 chr3R 16246474 intron tara + chr3R 16246576 intron tara + chr3R 16246679 intron tara + chr3R_18_16245001 chr3R_16245001 RAL-843 2804 chr3R 16260766 16260841 chr3R 16260897 16260971 12 130 0.0 9.0 4.5 2.2 205 chr3R 16260766 intergenic tara + chr3R 16260868 intergenic bor - chr3R 16260971 intergenic bor - chr3R_12_16260001 chr3R_16260001 RAL-843 2805 chr3R 16472565 16472594 chr3R 16472658 16472688 9 109 20.0 20.0 20.0 0.4 123 chr3R 16472565 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472688 5` UTR Gyc-89Da + chr3R_9_16470001 chr3R_16470001 RAL-843 2806 chr3R 16538351 16538420 chr3R 16538569 16538639 30 218 9.5 11.0 10.2 2.7 288 chr3R 16538351 intron CG42342 + chr3R 16538495 intron CG42342 + chr3R 16538639 intron CG42342 + chr3R_30_16535001 chr3R_16535001 RAL-843 2807 chr3R 16547121 16547183 chr3R 16547257 16547317 12 136 6.5 9.0 7.8 1.4 196 chr3R 16547121 intron CG42342 + chr3R 16547219 intron CG42342 + chr3R 16547317 intron CG42342 + chr3R_12_16545001 chr3R_16545001 RAL-843 2808 chr3R 16582859 16582919 chr3R 16582986 16583047 26 126 9.5 13.5 11.5 2.1 188 chr3R 16582859 intron Scp2 - chr3R 16582953 intron Scp2 - chr3R 16583047 intron Scp2 - chr3R_26_16580001 chr3R_16580001 RAL-843 2809 chr3R 16633650 16633679 chr3R 16633799 16633829 7 148 18.0 15.5 16.8 0.4 179 chr3R 16633650 intron Fas1 + chr3R 16633740 intron Fas1 + chr3R 16633829 intron Fas1 + chr3R_7_16630001 chr3R_16630001 RAL-843 2810 chr3R 16725738 16725808 chr3R 16725869 16725939 32 130 11.0 6.5 8.8 3.3 201 chr3R 16725738 intron Ubx - chr3R 16725838 intron Ubx - chr3R 16725939 intron Ubx - chr3R_32_16725001 chr3R_16725001 RAL-843 2811 chr3R 16734824 16734891 chr3R 16734959 16735024 8 133 0.0 4.5 2.2 2.5 200 chr3R 16734824 intergenic Ubx - chr3R 16734924 intergenic Ubx - chr3R 16735024 intergenic not near genes chr3R_8_16730001 chr3R_16730001 RAL-843 2812 chr3R 16756278 16756346 chr3R 16762519 16762556 diver 12 6234 5.5 4.0 4.8 2.1 6278 chr3R 16756278 intron bxd - chr3R 16759417 intron bxd - chr3R 16762556 intron bxd - chr3R_12_16755001 chr3R_16755001 RAL-843 2813 chr3R 16787976 16788054 chr3R 16788106 16788187 18 130 3.5 4.0 3.8 3.8 211 chr3R 16787976 intergenic Glut3 + chr3R 16788082 intergenic Glut3 + chr3R 16788187 intergenic Glut3 + chr3R_18_16785001 chr3R_16785001 RAL-843 2814 chr3R 16860287 16860336 chr3R 16860415 16860464 9 128 11.0 0.5 5.8 1.3 177 chr3R 16860287 intron iab-8 - chr3R 16860376 intron iab-8 - chr3R 16860464 intron iab-8 - chr3R_9_16860001 chr3R_16860001 RAL-843 2815 chr3R 16864200 16864258 chr3R 16864676 16864689 23 471 11.5 10.0 10.8 1.9 489 chr3R 16864200 intron iab-8 - chr3R 16864444 intron iab-8 - chr3R 16864689 intron iab-8 - chr3R_23_16860001 chr3R_16860001 RAL-843 2816 chr3R 16889910 16889985 chr3R 16890037 16890112 24 126 6.5 8.5 7.5 2.8 202 chr3R 16889910 intron iab-8 - chr3R 16890011 intron iab-8 - chr3R 16890112 3` UTR iab-8 - chr3R_24_16890001 chr3R_16890001 RAL-843 2817 chr3R 16902635 16902704 chr3R 16902764 16902815 20 122 6.0 4.0 5.0 3.3 180 chr3R 16902635 intron iab-8 - chr3R 16902725 intron iab-8 - chr3R 16902815 intron iab-8 - chr3R_20_16900001 chr3R_16900001 RAL-843 2818 chr3R 17065527 17065587 chr3R 17065851 17065911 22 322 12.0 8.5 10.2 2.0 384 chr3R 17065527 intron Dad + chr3R 17065719 intron Dad + chr3R 17065911 intron Dad + chr3R_22_17065001 chr3R_17065001 RAL-843 2819 chr3R 17165963 17166031 chr3R 17166263 17166338 7 302 6.0 0.0 3.0 1.8 375 chr3R 17165963 intron Mur89F - chr3R 17166150 intron Mur89F - chr3R 17166338 intron Mur89F - chr3R_7_17165001 chr3R_17165001 RAL-843 2820 chr3R 17335114 17335184 chr3R 17335239 17335309 32 120 9.5 7.0 8.2 3.5 195 chr3R 17335114 intron beat-IIa - chr3R 17335212 intron beat-IIa - chr3R 17335309 intron beat-IIa - chr3R_32_17335001 chr3R_17335001 RAL-843 2821 chr3R 17346670 17346710 chr3R 17348283 17348323 F-element 13 1613 7.0 11.5 9.2 1.3 1653 chr3R 17346670 intron beat-IIa - chr3R 17347496 intron beat-IIa - chr3R 17348323 intron beat-IIa - chr3R_13_17345001 chr3R_17345001 RAL-843 2822 chr3R 17348678 17348754 chr3R 17348817 17348838 32 132 7.0 4.5 5.8 4.7 160 chr3R 17348678 intron beat-IIa - chr3R 17348758 intron beat-IIa - chr3R 17348838 intron beat-IIa - chr3R_32_17345001 chr3R_17345001 RAL-843 2823 chr3R 17355445 17355520 chr3R 17355573 17355648 27 125 11.5 8.5 10.0 2.5 203 chr3R 17355445 intron beat-IIa - chr3R 17355546 intron beat-IIa - chr3R 17355648 intron beat-IIa - chr3R_27_17355001 chr3R_17355001 RAL-843 2824 chr3R 17360837 17360904 chr3R 17361072 17361145 30 229 6.0 6.0 6.0 4.3 308 chr3R 17360837 intron beat-IIa - chr3R 17360991 intron beat-IIa - chr3R 17361145 intron beat-IIa - chr3R_30_17360001 chr3R_17360001 RAL-843 2825 chr3R 17371379 17371425 chr3R 17371486 17371521 12 104 6.5 10.5 8.5 1.3 142 chr3R 17371379 3` UTR CR44256 - chr3R 17371450 3` UTR CR44256 - chr3R 17371521 3` UTR CR44256 - chr3R_12_17370001 chr3R_17370001 RAL-843 2826 chr3R 17416833 17416856 chr3R 17416996 17417019 INE-1 14 163 14.0 15.0 14.5 0.9 186 chr3R 17416833 intergenic CG5866 + chr3R 17416926 intergenic CG5866 + chr3R 17417019 intergenic CG33333 + chr3R_14_17415001 chr3R_17415001 RAL-843 2827 chr3R 17461154 17461195 chr3R 17461286 17461327 15 132 11.5 7.0 9.2 1.5 173 chr3R 17461154 intergenic not near genes chr3R 17461240 intergenic not near genes chr3R 17461327 intergenic not near genes chr3R_15_17460001 chr3R_17460001 RAL-843 2828 chr3R 17461198 17461223 chr3R 17461281 17461355 12 127 5.5 6.5 6.0 1.7 157 chr3R 17461198 intergenic not near genes chr3R 17461276 intergenic not near genes chr3R 17461355 intergenic not near genes chr3R_12_17460001 chr3R_17460001 RAL-843 2829 chr3R 17497913 17497992 chr3R 17498049 17498097 23 134 3.5 10.5 7.0 2.9 184 chr3R 17497913 intron Dscam3 - chr3R 17498005 intron Dscam3 - chr3R 17498097 intron Dscam3 - chr3R_23_17495001 chr3R_17495001 RAL-843 2830 chr3R 17509210 17509242 chr3R 17516805 17516825 412 10 7593 8.0 14.5 11.2 0.8 7615 chr3R 17509210 intergenic not near genes chr3R 17513018 intergenic not near genes chr3R 17516825 intergenic not near genes chr3R_10_17510001 chr3R_17510001 RAL-843 2831 chr3R 17521509 17521582 chr3R 17521716 17521792 13 193 4.5 8.5 6.5 1.7 283 chr3R 17521509 intergenic not near genes chr3R 17521650 intergenic not near genes chr3R 17521792 intergenic not near genes chr3R_13_17520001 chr3R_17520001 RAL-843 2832 chr3R 17522170 17522197 chr3R 17522312 17522319 4 134 18.5 0.0 9.2 0.4 149 chr3R 17522170 intergenic not near genes chr3R 17522244 intergenic not near genes chr3R 17522319 intergenic not near genes chr3R_4_17520001 chr3R_17520001 RAL-843 2833 chr3R 17524867 17524930 chr3R 17524995 17525060 7 126 1.0 4.5 2.8 1.8 193 chr3R 17524867 intergenic not near genes chr3R 17524964 intergenic not near genes chr3R 17525060 intergenic not near genes chr3R_7_17520001 chr3R_17520001 RAL-843 2834 chr3R 17591259 17591320 chr3R 17591735 17591761 F-element 22 473 11.0 8.0 9.5 2.1 502 chr3R 17591259 intergenic not near genes chr3R 17591510 intergenic not near genes chr3R 17591761 intergenic not near genes chr3R_22_17590001 chr3R_17590001 RAL-843 2835 chr3R 17615514 17615526 chr3R 17615641 17615653 6 127 8.5 11.0 9.8 0.6 139 chr3R 17615514 intergenic not near genes chr3R 17615584 intergenic not near genes chr3R 17615653 intergenic not near genes chr3R_6_17615001 chr3R_17615001 RAL-843 2836 chr3R 17638274 17638337 chr3R 17638810 17638873 roo 25 536 8.5 6.0 7.2 3.0 599 chr3R 17638274 intron CG43175 + chr3R 17638574 intron CG43175 + chr3R 17638873 intron,intron CG43175 +,CR45222 + chr3R_25_17635001 chr3R_17635001 RAL-843 2837 chr3R 17645666 17645701 chr3R 17645846 17645865 9 178 3.5 4.5 4.0 1.8 199 chr3R 17645666 intergenic CG43175 + chr3R 17645766 intergenic not near genes chr3R 17645865 intergenic not near genes chr3R_9_17645001 chr3R_17645001 RAL-843 2838 chr3R 17653033 17653114 chr3R 17653172 17653248 21 138 6.0 7.0 6.5 2.8 215 chr3R 17653033 intron,intron CG14322 +,CR45223 - chr3R 17653140 intron,intron CG14322 +,CR45223 - chr3R 17653248 intron,intron CG14322 +,CR45223 - chr3R_21_17650001 chr3R_17650001 RAL-843 2839 chr3R 17657651 17657662 chr3R 17657807 17657863 INE-1 6 194 0.0 14.5 7.2 0.7 212 chr3R 17657651 intron CG14322 + chr3R 17657757 intron CG14322 + chr3R 17657863 intron CG14322 + chr3R_6_17655001 chr3R_17655001 RAL-843 2840 chr3R 17734076 17734111 chr3R 17734215 17734250 17 135 12.0 13.0 12.5 1.3 174 chr3R 17734076 exon CG14321 + chr3R 17734163 3` UTR CG14321 + chr3R 17734250 3` UTR CG14321 + chr3R_17_17730001 chr3R_17730001 RAL-843 2841 chr3R 17734112 17734128 chr3R 17734239 17734262 9 132 9.5 16.5 13.0 0.6 150 chr3R 17734112 3` UTR CG14321 + chr3R 17734187 3` UTR CG14321 + chr3R 17734262 3` UTR CG14321 + chr3R_9_17730001 chr3R_17730001 RAL-843 2842 chr3R 17734799 17734855 chr3R 17734962 17735018 24 163 5.0 0.0 2.5 6.9 219 chr3R 17734799 intergenic CG14321 + chr3R 17734908 intergenic not near genes chr3R 17735018 intergenic not near genes chr3R_24_17730001 chr3R_17730001 RAL-843 2843 chr3R 17746551 17746612 chr3R 17746677 17746693 11 120 5.5 8.5 7.0 1.4 142 chr3R 17746551 3` UTR TyrRII + chr3R 17746622 3` UTR TyrRII + chr3R 17746693 3` UTR TyrRII + chr3R_11_17745001 chr3R_17745001 RAL-843 2844 chr3R 17773344 17773391 chr3R 17773472 17773521 22 130 10.5 8.5 9.5 2.1 177 chr3R 17773344 exon CG43102 - chr3R 17773432 intron CG43102 - chr3R 17773521 exon CG43102 - chr3R_22_17770001 chr3R_17770001 RAL-843 2845 chr3R 17811149 17811174 chr3R 17811279 17811304 9 128 19.0 0.0 9.5 0.9 155 chr3R 17811149 intergenic CG18012 -,tinc + chr3R 17811226 intergenic CG18012 -,tinc + chr3R 17811304 intergenic CG18012 -,tinc + chr3R_9_17810001 chr3R_17810001 RAL-843 2846 chr3R 17823158 17823235 chr3R 17823293 17823370 21 135 5.0 9.0 7.0 2.6 212 chr3R 17823158 intron tinc + chr3R 17823264 intron tinc + chr3R 17823370 intron tinc + chr3R_21_17820001 chr3R_17820001 RAL-843 2847 chr3R 17825873 17825928 chr3R 17826002 17826060 6 131 0.0 6.5 3.2 1.4 187 chr3R 17825873 intron tinc + chr3R 17825966 intron tinc + chr3R 17826060 intron tinc + chr3R_6_17825001 chr3R_17825001 RAL-843 2848 chr3R 17845206 17845209 chr3R 17845318 17845331 4 122 12.5 22.5 17.5 0.2 125 chr3R 17845206 intron tinc + chr3R 17845268 intron tinc + chr3R 17845331 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-843 2849 chr3R 17851696 17851784 chr3R 17851902 17851987 15 205 0.0 5.0 2.5 4.3 291 chr3R 17851696 intron tinc + chr3R 17851842 intron tinc + chr3R 17851987 5` UTR tinc + chr3R_15_17850001 chr3R_17850001 RAL-843 2850 chr3R 17855999 17856045 chr3R 17856143 17856196 17 146 11.0 5.5 8.2 1.8 197 chr3R 17855999 intron tinc + chr3R 17856098 intron tinc + chr3R 17856196 intron tinc + chr3R_17_17855001 chr3R_17855001 RAL-843 2851 chr3R 17898322 17898344 chr3R 17898454 17898476 13 131 7.0 16.0 11.5 1.0 154 chr3R 17898322 intron Rim - chr3R 17898399 intron Rim - chr3R 17898476 intron Rim - chr3R_13_17895001 chr3R_17895001 RAL-843 2852 chr3R 17898352 17898357 chr3R 17898464 17898473 4 121 6.0 21.0 13.5 0.3 121 chr3R 17898352 intron Rim - chr3R 17898412 intron Rim - chr3R 17898473 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-843 2853 chr3R 17899044 17899058 chr3R 17899172 17899186 9 127 9.5 7.5 8.5 0.9 142 chr3R 17899044 intron Rim - chr3R 17899115 intron Rim - chr3R 17899186 intron Rim - chr3R_9_17895001 chr3R_17895001 RAL-843 2854 chr3R 17913074 17913143 chr3R 17913219 17913288 26 145 6.5 10.0 8.2 2.8 214 chr3R 17913074 intron Rim - chr3R 17913181 intron Rim - chr3R 17913288 intron Rim - chr3R_26_17910001 chr3R_17910001 RAL-843 2855 chr3R 17915534 17915593 chr3R 17915737 17915796 11 203 5.0 11.0 8.0 1.2 262 chr3R 17915534 intron Rim - chr3R 17915665 intron Rim - chr3R 17915796 intron Rim - chr3R_11_17915001 chr3R_17915001 RAL-843 2856 chr3R 17925810 17925849 chr3R 17927327 17927366 hobo 14 1515 14.5 10.0 12.2 1.1 1556 chr3R 17925810 intron cpo + chr3R 17926588 intron cpo + chr3R 17927366 intron cpo + chr3R_14_17925001 chr3R_17925001 RAL-843 2857 chr3R 17976472 17976532 chr3R 17976599 17976659 17 127 5.5 10.5 8.0 1.9 187 chr3R 17976472 intron cpo + chr3R 17976566 intron cpo + chr3R 17976659 intron cpo + chr3R_17_17975001 chr3R_17975001 RAL-843 2858 chr3R 17983183 17983225 chr3R 17983309 17983318 4 111 7.5 0.0 3.8 0.8 135 chr3R 17983183 intron cpo + chr3R 17983250 intron cpo + chr3R 17983318 intron cpo + chr3R_4_17980001 chr3R_17980001 RAL-843 2859 chr3R 18032749 18032809 chr3R 18040469 18040529 opus 8 7720 1.5 0.5 1.0 4.0 7780 chr3R 18032749 intergenic not near genes chr3R 18036639 intergenic not near genes chr3R 18040529 intergenic not near genes chr3R_8_18035001 chr3R_18035001 RAL-843 2860 chr3R 18041703 18041744 chr3R 18041830 18041861 5 124 1.5 0.5 1.0 2.5 158 chr3R 18041703 intergenic not near genes chr3R 18041782 intergenic not near genes chr3R 18041861 intergenic not near genes chr3R_5_18040001 chr3R_18040001 RAL-843 2861 chr3R 18061398 18061447 chr3R 18061540 18061589 10 142 5.5 0.0 2.8 2.6 191 chr3R 18061398 intergenic not near genes chr3R 18061494 intergenic not near genes chr3R 18061589 intergenic not near genes chr3R_10_18060001 chr3R_18060001 RAL-843 2862 chr3R 18061570 18061585 chr3R 18063194 18063209 F-element 9 1624 0.0 4.0 2.0 3.0 1639 chr3R 18061570 intergenic not near genes chr3R 18062390 intergenic not near genes chr3R 18063209 intergenic not near genes chr3R_9_18060001 chr3R_18060001 RAL-843 2863 chr3R 18107120 18107136 chr3R 18107253 18107269 5 133 0.0 13.5 6.8 0.6 149 chr3R 18107120 intron sr + chr3R 18107194 intron sr + chr3R 18107269 intron sr + chr3R_5_18105001 chr3R_18105001 RAL-843 2864 chr3R 18117368 18117415 chr3R 18117494 18117541 10 123 7.5 7.0 7.2 1.2 173 chr3R 18117368 intron sr + chr3R 18117454 intron sr + chr3R 18117541 intron sr + chr3R_10_18115001 chr3R_18115001 RAL-843 2865 chr3R 18122845 18122914 chr3R 18122973 18123041 11 127 6.5 9.0 7.8 1.2 196 chr3R 18122845 intron sr + chr3R 18122943 intron sr + chr3R 18123041 intron sr + chr3R_11_18120001 chr3R_18120001 RAL-843 2866 chr3R 18143509 18143583 chr3R 18143648 18143722 16 139 7.5 3.0 5.2 2.6 213 chr3R 18143509 intergenic not near genes chr3R 18143616 intergenic not near genes chr3R 18143722 intergenic not near genes chr3R_16_18140001 chr3R_18140001 RAL-843 2867 chr3R 18302942 18302988 chr3R 18303096 18303142 10 154 13.0 0.0 6.5 1.3 200 chr3R 18302942 intergenic CG7126 -,PKD - chr3R 18303042 intergenic CG7126 -,PKD - chr3R 18303142 intergenic PKD -,CG7126 - chr3R_10_18300001 chr3R_18300001 RAL-843 2868 chr3R 18322810 18322819 chr3R 18323397 18323406 8 587 70.5 68.0 69.2 0.1 596 chr3R 18322810 intron CG31235 - chr3R 18323108 intron CG31235 - chr3R 18323406 intron CG31235 - chr3R_8_18320001 chr3R_18320001 RAL-843 2869 chr3R 18322809 18322827 chr3R 18323407 18323429 15 592 77.0 66.0 71.5 0.2 620 chr3R 18322809 intron CG31235 - chr3R 18323119 intron CG31235 - chr3R 18323429 intron CG31235 - chr3R_15_18320001 chr3R_18320001 RAL-843 2870 chr3R 18322804 18322868 chr3R 18323432 18323468 39 596 89.0 58.5 73.8 0.5 664 chr3R 18322804 intron CG31235 - chr3R 18323136 intron CG31235 - chr3R 18323468 intron CG31235 - chr3R_39_18320001 chr3R_18320001 RAL-843 2871 chr3R 18328549 18328590 chr3R 18328669 18328716 17 123 10.5 13.0 11.8 1.3 167 chr3R 18328549 intron CG31235 - chr3R 18328632 intron CG31235 - chr3R 18328716 intron CG31235 - chr3R_17_18325001 chr3R_18325001 RAL-843 2872 chr3R 18472236 18472298 chr3R 18472387 18472449 13 151 7.0 1.0 4.0 2.6 213 chr3R 18472236 intron fru - chr3R 18472342 intron fru - chr3R 18472449 intron fru - chr3R_13_18470001 chr3R_18470001 RAL-843 2873 chr3R 18473174 18473255 chr3R 18473323 18473393 6 145 0.0 5.0 2.5 1.7 219 chr3R 18473174 intron fru - chr3R 18473284 intron fru - chr3R 18473393 intron fru - chr3R_6_18470001 chr3R_18470001 RAL-843 2874 chr3R 18485282 18485355 chr3R 18485432 18485500 14 150 1.5 5.0 3.2 3.3 218 chr3R 18485282 intron fru - chr3R 18485391 intron fru - chr3R 18485500 intron fru - chr3R_14_18485001 chr3R_18485001 RAL-843 2875 chr3R 18501551 18501616 chr3R 18501682 18501747 29 131 10.0 12.5 11.2 2.4 196 chr3R 18501551 intron fru - chr3R 18501649 intron fru - chr3R 18501747 intron fru - chr3R_29_18500001 chr3R_18500001 RAL-843 2876 chr3R 18537194 18537246 chr3R 18537328 18537380 23 134 8.5 9.5 9.0 2.3 186 chr3R 18537194 intron fru - chr3R 18537287 intron fru - chr3R 18537380 intron fru - chr3R_23_18535001 chr3R_18535001 RAL-843 2877 chr3R 18537248 18537259 chr3R 18537319 18537393 10 127 8.0 8.0 8.0 1.1 145 chr3R 18537248 intron fru - chr3R 18537320 intron fru - chr3R 18537393 intron fru - chr3R_10_18535001 chr3R_18535001 RAL-843 2878 chr3R 18606466 18606514 chr3R 18610741 18610796 F-element 21 4280 14.0 6.0 10.0 1.9 4330 chr3R 18606466 intron,intron qin +,CG14304 - chr3R 18608631 intron,intron qin +,CG14304 - chr3R 18610796 intron,intron qin +,CG14304 - chr3R_21_18605001 chr3R_18605001 RAL-843 2879 chr3R 18617689 18617732 chr3R 18617820 18617863 21 131 6.5 6.0 6.2 2.9 174 chr3R 18617689 intron,intron qin +,CG14304 - chr3R 18617776 intron,intron qin +,CG14304 - chr3R 18617863 intron,intron qin +,CG14304 - chr3R_21_18615001 chr3R_18615001 RAL-843 2880 chr3R 18695719 18695733 chr3R 18695853 18695856 4 131 17.5 0.0 8.8 0.4 137 chr3R 18695719 3` UTR CG34282 + chr3R 18695788 intergenic CG34282 + chr3R 18695856 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-843 2881 chr3R 18729978 18729991 chr3R 18730104 18730117 5 126 20.5 10.0 15.2 0.3 139 chr3R 18729978 exon Cha + chr3R 18730048 intron Cha + chr3R 18730117 exon Cha + chr3R_5_18730001 chr3R_18730001 RAL-843 2882 chr3R 18729994 18730037 chr3R 18730101 18730163 9 116 9.0 9.0 9.0 0.9 169 chr3R 18729994 exon Cha + chr3R 18730078 intron Cha + chr3R 18730163 exon Cha + chr3R_9_18730001 chr3R_18730001 RAL-843 2883 chr3R 18781549 18781719 chr3R 18781681 18781836 44 128 0.0 0.5 0.2 36.7 287 chr3R 18781549 intron CG7720 - chr3R 18781692 intron CG7720 - chr3R 18781836 intron CG7720 - chr3R_44_18780001 chr3R_18780001 RAL-843 2884 chr3R 18790534 18790558 chr3R 18790630 18790686 6 113 0.5 1.0 0.8 3.3 152 chr3R 18790534 intron CG7720 - chr3R 18790610 intron CG7720 - chr3R 18790686 intron CG7720 - chr3R_6_18790001 chr3R_18790001 RAL-843 2885 chr3R 18790560 18790565 chr3R 18790628 18790687 4 111 0.5 1.0 0.8 2.2 127 chr3R 18790560 intron CG7720 - chr3R 18790624 intron CG7720 - chr3R 18790687 intron CG7720 - chr3R_4_18790001 chr3R_18790001 RAL-843 2886 chr3R 18792768 18792830 chr3R 18792900 18792963 12 133 1.0 0.0 0.5 8.0 195 chr3R 18792768 intron CG7720 - chr3R 18792866 intron CG7720 - chr3R 18792963 intron CG7720 - chr3R_12_18790001 chr3R_18790001 RAL-843 2887 chr3R 18807281 18807313 chr3R 18807408 18807440 10 126 9.5 0.0 4.8 1.7 159 chr3R 18807281 exon CG18208 - chr3R 18807360 intron CG18208 - chr3R 18807440 intron CG18208 - chr3R_10_18805001 chr3R_18805001 RAL-843 2888 chr3R 18812027 18812101 chr3R 18812155 18812226 19 126 9.5 9.5 9.5 1.8 199 chr3R 18812027 intron CG18208 - chr3R 18812126 intron CG18208 - chr3R 18812226 intron CG18208 - chr3R_19_18810001 chr3R_18810001 RAL-843 2889 chr3R 18895355 18895575 chr3R 18895482 18895710 55 131 2.0 2.0 2.0 18.3 355 chr3R 18895355 intergenic not near genes chr3R 18895532 intergenic not near genes chr3R 18895710 intergenic not near genes chr3R_55_18895001 chr3R_18895001 RAL-843 2890 chr3R 18932169 18932219 chr3R 18932575 18932625 24 406 6.5 5.0 5.8 3.5 456 chr3R 18932169 intron CG42613 + chr3R 18932397 intron CG42613 + chr3R 18932625 intron CG42613 + chr3R_24_18930001 chr3R_18930001 RAL-843 2891 chr3R 18933770 18933809 chr3R 18933884 18933894 14 107 19.0 18.0 18.5 0.7 124 chr3R 18933770 intron CG42613 + chr3R 18933832 intron CG42613 + chr3R 18933894 intron CG42613 + chr3R_14_18930001 chr3R_18930001 RAL-843 2892 chr3R 18940644 18940705 chr3R 18940774 18940848 10 136 5.5 0.0 2.8 2.6 204 chr3R 18940644 intron CG42613 + chr3R 18940746 intron CG42613 + chr3R 18940848 intron CG42613 + chr3R_10_18940001 chr3R_18940001 RAL-843 2893 chr3R 19012991 19013047 chr3R 19013114 19013175 29 131 5.5 7.5 6.5 3.9 184 chr3R 19012991 intron gukh + chr3R 19013083 intron gukh + chr3R 19013175 exon gukh + chr3R_29_19010001 chr3R_19010001 RAL-843 2894 chr3R 19081975 19081985 chr3R 19082089 19082094 7 121 8.5 8.0 8.2 0.8 119 chr3R 19081975 intron cdi - chr3R 19082034 intron cdi - chr3R 19082094 intron cdi - chr3R_7_19080001 chr3R_19080001 RAL-843 2895 chr3R 19117017 19117029 chr3R 19117211 19117216 5 193 12.0 0.0 6.0 0.7 199 chr3R 19117017 intron CG6040 + chr3R 19117116 intron CG6040 + chr3R 19117216 intron CG6040 + chr3R_5_19115001 chr3R_19115001 RAL-843 2896 chr3R 19192922 19193003 chr3R 19197279 19197314 F-element 5 4345 0.0 9.0 4.5 0.9 4392 chr3R 19192922 intron CG31475 + chr3R 19195118 intron CG31475 + chr3R 19197314 intron CG31475 + chr3R_5_19195001 chr3R_19195001 RAL-843 2897 chr3R 19201231 19201303 chr3R 19201368 19201440 29 137 12.5 11.5 12.0 2.2 209 chr3R 19201231 intergenic CG31475 + chr3R 19201336 intergenic CG31475 + chr3R 19201440 intergenic CG31475 + chr3R_29_19200001 chr3R_19200001 RAL-843 2898 chr3R 19207351 19207391 chr3R 19207482 19207507 13 136 12.0 6.5 9.2 1.3 156 chr3R 19207351 intergenic not near genes chr3R 19207429 intergenic not near genes chr3R 19207507 intergenic not near genes chr3R_13_19205001 chr3R_19205001 RAL-843 2899 chr3R 19207394 19207412 chr3R 19207477 19207550 11 122 7.5 6.5 7.0 1.4 156 chr3R 19207394 intergenic not near genes chr3R 19207472 intergenic not near genes chr3R 19207550 intergenic not near genes chr3R_11_19205001 chr3R_19205001 RAL-843 2900 chr3R 19208650 19208663 chr3R 19208787 19208800 6 137 12.0 0.5 6.2 0.8 150 chr3R 19208650 intergenic not near genes chr3R 19208725 intergenic not near genes chr3R 19208800 intergenic not near genes chr3R_6_19205001 chr3R_19205001 RAL-843 2901 chr3R 19276881 19276947 chr3R 19277011 19277077 23 129 9.0 10.5 9.8 2.1 196 chr3R 19276881 intergenic not near genes chr3R 19276979 intergenic not near genes chr3R 19277077 intergenic not near genes chr3R_23_19275001 chr3R_19275001 RAL-843 2902 chr3R 19282010 19282029 chr3R 19282147 19282161 4 132 19.5 13.0 16.2 0.2 151 chr3R 19282010 intergenic not near genes chr3R 19282086 intergenic not near genes chr3R 19282161 intergenic not near genes chr3R_4_19280001 chr3R_19280001 RAL-843 2903 chr3R 19332947 19332950 chr3R 29474302 29474305 4 10141355 3.5 26.0 14.8 0.3 10141358 chr3R 19332947 intergenic not near genes chr3R 24403626 intron nAChRalpha1 - chr3R 29474305 intron Ptp99A + chr3R_4_24400001 chr3R_24400001 RAL-843 2904 chr3R 19335851 19335934 chr3R 19335986 19336069 15 135 6.0 5.0 5.5 2.3 218 chr3R 19335851 intergenic not near genes chr3R 19335960 intergenic not near genes chr3R 19336069 intergenic not near genes chr3R_15_19335001 chr3R_19335001 RAL-843 2905 chr3R 19337173 19337209 chr3R 19337303 19337322 5 120 17.0 21.0 19.0 0.2 149 chr3R 19337173 intergenic not near genes chr3R 19337248 intergenic not near genes chr3R 19337322 intergenic not near genes chr3R_5_19335001 chr3R_19335001 RAL-843 2906 chr3R 19340360 19340425 chr3R 19340481 19340551 29 126 6.5 7.5 7.0 3.6 191 chr3R 19340360 intergenic not near genes chr3R 19340456 intergenic not near genes chr3R 19340551 intergenic not near genes chr3R_29_19340001 chr3R_19340001 RAL-843 2907 chr3R 19344625 19344693 chr3R 19344810 19344878 35 185 4.5 0.5 2.5 10.0 253 chr3R 19344625 intergenic not near genes chr3R 19344752 intergenic not near genes chr3R 19344878 intergenic not near genes chr3R_35_19340001 chr3R_19340001 RAL-843 2908 chr3R 19418367 19418403 chr3R 19418509 19418545 22 142 18.5 0.0 9.2 2.2 178 chr3R 19418367 intron CG31221 + chr3R 19418456 intron CG31221 + chr3R 19418545 intron CG31221 + chr3R_22_19415001 chr3R_19415001 RAL-843 2909 chr3R 19418409 19418420 chr3R 19418551 19418562 7 142 14.5 0.0 7.2 0.9 153 chr3R 19418409 intron CG31221 + chr3R 19418486 intron CG31221 + chr3R 19418562 intron CG31221 + chr3R_7_19415001 chr3R_19415001 RAL-843 2910 chr3R 19533339 19533388 chr3R 19533457 19533515 21 125 9.0 14.0 11.5 1.7 176 chr3R 19533339 intron Dys + chr3R 19533427 intron Dys + chr3R 19533515 intron Dys + chr3R_21_19530001 chr3R_19530001 RAL-843 2911 chr3R 19561779 19561814 chr3R 19561906 19561914 10 123 17.5 4.5 11.0 0.8 135 chr3R 19561779 intron Dys + chr3R 19561846 intron Dys + chr3R 19561914 intron Dys + chr3R_10_19560001 chr3R_19560001 RAL-843 2912 chr3R 19561815 19561841 chr3R 19561905 19561928 5 89 12.5 4.0 8.2 0.5 113 chr3R 19561815 intron Dys + chr3R 19561872 intron Dys + chr3R 19561928 intron Dys + chr3R_5_19560001 chr3R_19560001 RAL-843 2913 chr3R 19581594 19581619 chr3R 19581724 19581749 10 130 18.0 5.0 11.5 0.8 155 chr3R 19581594 intron Dys + chr3R 19581672 intron Dys + chr3R 19581749 intron Dys + chr3R_10_19580001 chr3R_19580001 RAL-843 2914 chr3R 19590597 19590647 chr3R 19590739 19590789 27 139 4.0 6.5 5.2 4.4 192 chr3R 19590597 exon Dys + chr3R 19590693 intron Dys + chr3R 19590789 exon Dys + chr3R_27_19590001 chr3R_19590001 RAL-843 2915 chr3R 19591486 19591549 chr3R 19591616 19591640 7 124 4.5 2.0 3.2 1.7 154 chr3R 19591486 intron Dys + chr3R 19591563 intron Dys + chr3R 19591640 intron Dys + chr3R_7_19590001 chr3R_19590001 RAL-843 2916 chr3R 19633268 19633321 chr3R 19633403 19633457 16 136 5.0 8.0 6.5 2.1 189 chr3R 19633268 intergenic subdued - chr3R 19633362 intergenic subdued - chr3R 19633457 3` UTR subdued - chr3R_16_19630001 chr3R_19630001 RAL-843 2917 chr3R 19648298 19648354 chr3R 19650356 19650418 28 2065 57.5 70.5 64.0 0.4 2120 chr3R 19648298 5` UTR CG6195 - chr3R 19649358 intron CG31220 + chr3R 19650418 exon CG31220 + chr3R_28_19645001 chr3R_19645001 RAL-843 2918 chr3R 19702277 19702288 chr3R 19702408 19702420 4 132 21.5 6.0 13.8 0.3 143 chr3R 19702277 intergenic not near genes chr3R 19702348 intergenic not near genes chr3R 19702420 intergenic not near genes chr3R_4_19700001 chr3R_19700001 RAL-843 2919 chr3R 19702291 19702350 chr3R 19702403 19702482 27 129 6.0 4.5 5.2 4.4 191 chr3R 19702291 intergenic not near genes chr3R 19702386 intergenic not near genes chr3R 19702482 intergenic not near genes chr3R_27_19700001 chr3R_19700001 RAL-843 2920 chr3R 19716160 19716247 chr3R 19716291 19716374 5 130 3.0 0.0 1.5 2.0 214 chr3R 19716160 intergenic CG34286 - chr3R 19716267 intergenic CG34286 - chr3R 19716374 intergenic CG34286 - chr3R_5_19715001 chr3R_19715001 RAL-843 2921 chr3R 19733975 19734000 chr3R 19734103 19734128 14 128 5.5 5.5 5.5 2.2 153 chr3R 19733975 intron GluClalpha + chr3R 19734052 intron GluClalpha + chr3R 19734128 intron GluClalpha + chr3R_14_19730001 chr3R_19730001 RAL-843 2922 chr3R 19763874 19763954 chr3R 19764012 19764092 10 138 3.0 0.5 1.8 3.6 218 chr3R 19763874 intron GluClalpha + chr3R 19763983 intron GluClalpha + chr3R 19764092 intron GluClalpha + chr3R_10_19760001 chr3R_19760001 RAL-843 2923 chr3R 19777262 19777315 chr3R 19777478 19777531 19 215 7.5 8.0 7.8 2.2 269 chr3R 19777262 5` UTR CG11659 - chr3R 19777396 intergenic CG11659 - chr3R 19777531 intergenic CG11659 - chr3R_19_19775001 chr3R_19775001 RAL-843 2924 chr3R 19830838 19830880 chr3R 19830965 19831007 7 127 0.0 4.5 2.2 2.2 169 chr3R 19830838 intron bnl - chr3R 19830922 intron bnl - chr3R 19831007 intron bnl - chr3R_7_19830001 chr3R_19830001 RAL-843 2925 chr3R 19846917 19846955 chr3R 19847127 19847167 7 210 10.0 0.0 5.0 1.2 250 chr3R 19846917 intergenic CG4662 + chr3R 19847042 intergenic CG4662 + chr3R 19847167 intergenic CG4662 + chr3R_7_19845001 chr3R_19845001 RAL-843 2926 chr3R 19848281 19848291 chr3R 19848438 19848448 8 157 0.0 8.0 4.0 1.6 167 chr3R 19848281 intron CG4662 + chr3R 19848364 intron CG4662 + chr3R 19848448 intron CG4662 + chr3R_8_19845001 chr3R_19845001 RAL-843 2927 chr3R 19908219 19908289 chr3R 19908353 19908423 11 134 0.0 7.5 3.8 2.3 204 chr3R 19908219 intron RhoGAP92B + chr3R 19908321 intron RhoGAP92B + chr3R 19908423 intron,3` UTR RhoGAP92B +,CR45048 - chr3R_11_19905001 chr3R_19905001 RAL-843 2928 chr3R 20004955 20005019 chr3R 20005097 20005156 24 130 6.5 8.0 7.2 2.9 201 chr3R 20004955 intron Hs6st - chr3R 20005056 intron Hs6st - chr3R 20005156 intron Hs6st - chr3R_24_20005001 chr3R_20005001 RAL-843 2929 chr3R 20008778 20008847 chr3R 20008909 20008972 31 130 11.0 9.5 10.2 2.8 194 chr3R 20008778 intergenic MED25 +,Hs6st - chr3R 20008875 intergenic MED25 +,Hs6st - chr3R 20008972 5` UTR MED25 + chr3R_31_20005001 chr3R_20005001 RAL-843 2930 chr3R 20041072 20041084 chr3R 20041224 20041236 6 151 27.5 10.0 18.8 0.3 164 chr3R 20041072 intron CG17193 - chr3R 20041154 intron CG17193 - chr3R 20041236 intron CG17193 - chr3R_6_20040001 chr3R_20040001 RAL-843 2931 chr3R 20041085 20041144 chr3R 20041222 20041285 30 145 8.0 9.0 8.5 3.2 200 chr3R 20041085 intron CG17193 - chr3R 20041185 intron CG17193 - chr3R 20041285 intron CG17193 - chr3R_30_20040001 chr3R_20040001 RAL-843 2932 chr3R 20109493 20109560 chr3R 20114749 20114816 copia 25 5254 6.5 11.0 8.8 2.6 5323 chr3R 20109493 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114816 intergenic CG10887 + chr3R_25_20110001 chr3R_20110001 RAL-843 2933 chr3R 20132930 20132991 chr3R 20133056 20133117 11 125 5.5 4.0 4.8 1.9 187 chr3R 20132930 intergenic not near genes chr3R 20133024 intergenic not near genes chr3R 20133117 intergenic not near genes chr3R_11_20130001 chr3R_20130001 RAL-843 2934 chr3R 20156653 20156715 chr3R 20165873 20165935 roo 26 9219 4.5 12.0 8.2 2.8 9282 chr3R 20156653 intergenic not near genes chr3R 20161294 intergenic not near genes chr3R 20165935 intergenic not near genes chr3R_26_20160001 chr3R_20160001 RAL-843 2935 chr3R 20194779 20194849 chr3R 20196917 20196987 23 2133 23.5 49.0 36.2 0.6 2208 chr3R 20194779 intergenic not near genes chr3R 20195883 intergenic not near genes chr3R 20196987 intergenic not near genes chr3R_23_20195001 chr3R_20195001 RAL-843 2936 chr3R 20195204 20195256 chr3R 20195321 20195337 14 106 10.5 8.0 9.2 1.4 133 chr3R 20195204 intergenic not near genes chr3R 20195270 intergenic not near genes chr3R 20195337 intergenic not near genes chr3R_14_20195001 chr3R_20195001 RAL-843 2937 chr3R 20197070 20197117 chr3R 20197197 20197222 28 125 29.0 18.5 23.8 1.1 152 chr3R 20197070 intergenic not near genes chr3R 20197146 intergenic not near genes chr3R 20197222 intergenic not near genes chr3R_28_20195001 chr3R_20195001 RAL-843 2938 chr3R 20197118 20197144 chr3R 20197190 20197259 21 121 16.5 18.0 17.2 1.2 141 chr3R 20197118 intergenic not near genes chr3R 20197188 intergenic not near genes chr3R 20197259 intergenic not near genes chr3R_21_20195001 chr3R_20195001 RAL-843 2939 chr3R 20194519 20194576 chr3R 20197758 20197810 18 3235 17.5 66.5 42.0 0.4 3291 chr3R 20194519 intergenic not near genes chr3R 20196164 intergenic not near genes chr3R 20197810 intergenic not near genes chr3R_18_20195001 chr3R_20195001 RAL-843 2940 chr3R 20203906 20203923 chr3R 20204037 20204054 8 131 3.5 6.0 4.8 1.4 148 chr3R 20203906 intergenic not near genes chr3R 20203980 intergenic not near genes chr3R 20204054 intergenic not near genes chr3R_8_20200001 chr3R_20200001 RAL-843 2941 chr3R 20205523 20205587 chr3R 20205695 20205759 19 172 10.0 10.5 10.2 1.7 236 chr3R 20205523 intron Nlg4 + chr3R 20205641 intron Nlg4 + chr3R 20205759 intron Nlg4 + chr3R_19_20205001 chr3R_20205001 RAL-843 2942 chr3R 20205885 20205930 chr3R 20206019 20206064 6 134 1.5 3.0 2.2 1.9 179 chr3R 20205885 intron Nlg4 + chr3R 20205974 intron Nlg4 + chr3R 20206064 intron Nlg4 + chr3R_6_20205001 chr3R_20205001 RAL-843 2943 chr3R 20209762 20209813 chr3R 20209898 20209949 21 136 7.5 10.5 9.0 2.1 187 chr3R 20209762 intron,5` UTR Nlg4 +,CG17199 - chr3R 20209856 intron Nlg4 + chr3R 20209949 intron Nlg4 + chr3R_21_20205001 chr3R_20205001 RAL-843 2944 chr3R 20245237 20245295 chr3R 20248897 20248955 F-element 17 3660 8.0 0.0 4.0 3.4 3718 chr3R 20245237 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248955 intergenic not near genes chr3R_17_20245001 chr3R_20245001 RAL-843 2945 chr3R 20252174 20252251 chr3R 20252302 20252379 16 128 6.5 0.5 3.5 3.6 205 chr3R 20252174 intergenic not near genes chr3R 20252276 intergenic cic + chr3R 20252379 intergenic cic + chr3R_16_20250001 chr3R_20250001 RAL-843 2946 chr3R 20256789 20256859 chr3R 20256915 20256987 17 127 0.5 9.5 5.0 2.8 198 chr3R 20256789 intron cic + chr3R 20256888 intron cic + chr3R 20256987 intron cic + chr3R_17_20255001 chr3R_20255001 RAL-843 2947 chr3R 20266505 20266533 chr3R 20273011 20273054 Burdock 10 6518 0.5 16.0 8.2 1.1 6549 chr3R 20266505 intron cic + chr3R 20269780 intron cic + chr3R 20273054 intron cic + chr3R_10_20265001 chr3R_20265001 RAL-843 2948 chr3R 20282226 20282299 chr3R 20282352 20282420 23 126 3.0 7.5 5.2 3.7 194 chr3R 20282226 intron cic + chr3R 20282323 intron cic + chr3R 20282420 intron cic + chr3R_23_20280001 chr3R_20280001 RAL-843 2949 chr3R 20308145 20308214 chr3R 20308283 20308353 15 147 5.0 0.0 2.5 4.3 208 chr3R 20308145 intergenic not near genes chr3R 20308249 intergenic not near genes chr3R 20308353 intergenic not near genes chr3R_15_20305001 chr3R_20305001 RAL-843 2950 chr3R 20330582 20330595 chr3R 20330722 20330729 7 139 21.0 9.5 15.2 0.4 147 chr3R 20330582 3` UTR Sirt2 + chr3R 20330656 3` UTR Sirt2 + chr3R 20330729 3` UTR Sirt2 + chr3R_7_20330001 chr3R_20330001 RAL-843 2951 chr3R 20330596 20330627 chr3R 20330710 20330757 6 133 13.0 6.5 9.8 0.6 161 chr3R 20330596 3` UTR Sirt2 + chr3R 20330676 3` UTR Sirt2 + chr3R 20330757 3` UTR Sirt2 + chr3R_6_20330001 chr3R_20330001 RAL-843 2952 chr3R 20330958 20331020 chr3R 20331494 20331556 roo 27 536 8.0 9.5 8.8 2.8 598 chr3R 20330958 intergenic Sirt2 + chr3R 20331257 intergenic Sirt2 + chr3R 20331556 intergenic not near genes chr3R_27_20330001 chr3R_20330001 RAL-843 2953 chr3R 20345332 20345400 chr3R 20345471 20345539 16 139 0.0 8.5 4.2 3.1 207 chr3R 20345332 intergenic not near genes chr3R 20345436 intergenic not near genes chr3R 20345539 intergenic not near genes chr3R_16_20345001 chr3R_20345001 RAL-843 2954 chr3R 20424440 20424457 chr3R 20426559 20426576 5 2119 40.5 33.0 36.8 0.1 2136 chr3R 20424440 intron Gfrl - chr3R 20425508 intron Gfrl - chr3R 20426576 intron Gfrl - chr3R_5_20425001 chr3R_20425001 RAL-843 2955 chr3R 20424433 20424506 chr3R 20426589 20426625 16 2124 56.5 28.0 42.2 0.4 2192 chr3R 20424433 intron Gfrl - chr3R 20425529 intron Gfrl - chr3R 20426625 intron Gfrl - chr3R_16_20425001 chr3R_20425001 RAL-843 2956 chr3R 20430849 20430887 chr3R 20430980 20431018 10 130 9.0 21.0 15.0 0.6 169 chr3R 20430849 intron Gfrl - chr3R 20430934 intron Gfrl - chr3R 20431018 intron Gfrl - chr3R_10_20430001 chr3R_20430001 RAL-843 2957 chr3R 20450070 20450138 chr3R 20450200 20450273 7 134 5.0 0.0 2.5 2.0 203 chr3R 20450070 intron Gfrl - chr3R 20450172 intron Gfrl - chr3R 20450273 intron Gfrl - chr3R_7_20450001 chr3R_20450001 RAL-843 2958 chr3R 20450869 20450942 chr3R 20451008 20451060 22 129 3.5 6.5 5.0 3.7 191 chr3R 20450869 intron Gfrl - chr3R 20450964 intron Gfrl - chr3R 20451060 intron Gfrl - chr3R_22_20450001 chr3R_20450001 RAL-843 2959 chr3R 20469413 20469472 chr3R 20469546 20469585 25 132 11.5 0.0 5.8 3.7 172 chr3R 20469413 intron Gfrl - chr3R 20469499 intron Gfrl - chr3R 20469585 intron Gfrl - chr3R_25_20465001 chr3R_20465001 RAL-843 2960 chr3R 20479268 20479321 chr3R 20479370 20479446 10 118 11.0 11.5 11.2 0.8 178 chr3R 20479268 intron Gfrl - chr3R 20479357 intron Gfrl - chr3R 20479446 intron Gfrl - chr3R_10_20475001 chr3R_20475001 RAL-843 2961 chr3R 20492304 20492319 chr3R 20492535 20492550 5 231 20.5 10.5 15.5 0.3 246 chr3R 20492304 intergenic not near genes chr3R 20492427 intergenic not near genes chr3R 20492550 intergenic not near genes chr3R_5_20490001 chr3R_20490001 RAL-843 2962 chr3R 20492323 20492376 chr3R 20492533 20492577 24 221 9.0 10.5 9.8 2.2 254 chr3R 20492323 intergenic not near genes chr3R 20492450 intergenic not near genes chr3R 20492577 intergenic not near genes chr3R_24_20490001 chr3R_20490001 RAL-843 2963 chr3R 20500579 20500603 chr3R 20500726 20500759 5 154 3.5 3.5 3.5 1.1 180 chr3R 20500579 intron Dic2 - chr3R 20500669 intron Dic2 - chr3R 20500759 intron Dic2 - chr3R_5_20500001 chr3R_20500001 RAL-843 2964 chr3R 20506551 20506604 chr3R 20507404 20507457 BS 19 853 15.0 12.5 13.8 1.3 906 chr3R 20506551 intergenic Or92a + chr3R 20507004 intergenic CG4288 - chr3R 20507457 3` UTR CG4288 - chr3R_19_20505001 chr3R_20505001 RAL-843 2965 chr3R 20509681 20509755 chr3R 20509845 20509919 35 163 5.0 8.5 6.8 4.5 238 chr3R 20509681 intron CG4288 - chr3R 20509800 intron CG4288 - chr3R 20509919 intron CG4288 - chr3R_35_20505001 chr3R_20505001 RAL-843 2966 chr3R 20512961 20513002 chr3R 20515715 20515756 opus 7 2754 7.5 0.0 3.8 1.5 2795 chr3R 20512961 intergenic CG4288 - chr3R 20514358 intergenic not near genes chr3R 20515756 intergenic not near genes chr3R_7_20510001 chr3R_20510001 RAL-843 2967 chr3R 20518403 20518483 chr3R 20518542 20518622 37 139 6.0 4.0 5.0 6.2 219 chr3R 20518403 intergenic not near genes chr3R 20518512 intergenic not near genes chr3R 20518622 intergenic not near genes chr3R_37_20515001 chr3R_20515001 RAL-843 2968 chr3R 20527761 20527819 chr3R 20527916 20527974 19 154 3.0 6.0 4.5 3.5 213 chr3R 20527761 intergenic not near genes chr3R 20527868 intergenic not near genes chr3R 20527974 intergenic not near genes chr3R_19_20525001 chr3R_20525001 RAL-843 2969 chr3R 20536751 20536771 chr3R 20536882 20536902 6 130 10.5 17.0 13.8 0.4 151 chr3R 20536751 intron Stat92E - chr3R 20536826 intron Stat92E - chr3R 20536902 intron Stat92E - chr3R_6_20535001 chr3R_20535001 RAL-843 2970 chr3R 20594438 20594513 chr3R 20594571 20594658 16 141 1.5 0.0 0.8 8.9 220 chr3R 20594438 intron bon + chr3R 20594548 intron bon + chr3R 20594658 intron bon + chr3R_16_20590001 chr3R_20590001 RAL-843 2971 chr3R 20596142 20596214 chr3R 20596279 20596340 27 136 5.5 7.0 6.2 3.8 198 chr3R 20596142 intron bon + chr3R 20596241 intron bon + chr3R 20596340 intron bon + chr3R_27_20595001 chr3R_20595001 RAL-843 2972 chr3R 20601820 20601825 chr3R 20601953 20601958 4 133 27.0 0.0 13.5 0.3 138 chr3R 20601820 intron bon + chr3R 20601889 intron bon + chr3R 20601958 intron bon + chr3R_4_20600001 chr3R_20600001 RAL-843 2973 chr3R 20617449 20617512 chr3R 20617769 20617831 6 311 1.0 5.5 3.2 1.4 382 chr3R 20617449 intergenic CG5466 + chr3R 20617640 intergenic CG5466 + chr3R 20617831 intergenic CG5466 + chr3R_6_20615001 chr3R_20615001 RAL-843 2974 chr3R 20684171 20684226 chr3R 20684305 20684360 24 133 6.0 9.0 7.5 2.8 189 chr3R 20684171 intergenic not near genes chr3R 20684266 intergenic not near genes chr3R 20684360 intergenic not near genes chr3R_24_20680001 chr3R_20680001 RAL-843 2975 chr3R 20703441 20703507 chr3R 20703885 20703951 26 444 8.5 9.0 8.8 2.7 510 chr3R 20703441 intron Oamb - chr3R 20703696 intron Oamb - chr3R 20703951 intron Oamb - chr3R_26_20700001 chr3R_20700001 RAL-843 2976 chr3R 20722810 20722884 chr3R 20722982 20723028 20 172 6.0 7.5 6.8 2.6 218 chr3R 20722810 intergenic not near genes chr3R 20722919 intergenic not near genes chr3R 20723028 intergenic not near genes chr3R_20_20720001 chr3R_20720001 RAL-843 2977 chr3R 20730894 20730951 chr3R 20731035 20731109 13 143 7.5 0.0 3.8 2.7 215 chr3R 20730894 intergenic not near genes chr3R 20731002 intergenic not near genes chr3R 20731109 intergenic not near genes chr3R_13_20730001 chr3R_20730001 RAL-843 2978 chr3R 20787389 20787451 chr3R 20787530 20787592 22 140 8.5 10.0 9.2 2.2 203 chr3R 20787389 intron Syp + chr3R 20787490 intron Syp + chr3R 20787592 intron Syp + chr3R_22_20785001 chr3R_20785001 RAL-843 2979 chr3R 20847725 20847799 chr3R 20848012 20848086 36 287 10.5 9.5 10.0 3.3 361 chr3R 20847725 3` UTR CG15696 + chr3R 20847906 intergenic CG15696 + chr3R 20848086 intergenic CG15696 + chr3R_36_20845001 chr3R_20845001 RAL-843 2980 chr3R 20850044 20850113 chr3R 20850179 20850248 21 135 0.0 7.0 3.5 4.7 204 chr3R 20850044 intergenic RpS30 + chr3R 20850146 intergenic RpS30 + chr3R 20850248 intergenic RpS30 + chr3R_21_20850001 chr3R_20850001 RAL-843 2981 chr3R 20854443 20854459 chr3R 20859288 20859293 Doc 6 4842 8.5 9.0 8.8 0.6 4850 chr3R 20854443 intron Ir93a - chr3R 20856868 intron Ir93a - chr3R 20859293 exon Ir93a - chr3R_6_20855001 chr3R_20855001 RAL-843 2982 chr3R 20854466 20854504 chr3R 20859276 20859304 Doc 12 4834 0.0 7.0 3.5 2.7 4838 chr3R 20854466 intron Ir93a - chr3R 20856885 intron Ir93a - chr3R 20859304 exon Ir93a - chr3R_12_20855001 chr3R_20855001 RAL-843 2983 chr3R 20870206 20870279 chr3R 20870336 20870387 34 133 4.5 8.0 6.2 4.7 181 chr3R 20870206 intergenic not near genes chr3R 20870296 intergenic not near genes chr3R 20870387 intergenic not near genes chr3R_34_20870001 chr3R_20870001 RAL-843 2984 chr3R 20953319 20953379 chr3R 20953514 20953521 15 191 11.5 6.0 8.8 1.5 202 chr3R 20953319 intron Atpalpha + chr3R 20953420 intron Atpalpha + chr3R 20953521 intron Atpalpha + chr3R_15_20950001 chr3R_20950001 RAL-843 2985 chr3R 20971754 20971788 chr3R 20971893 20971927 13 138 16.5 16.5 16.5 0.7 173 chr3R 20971754 intron Atpalpha + chr3R 20971840 intron Atpalpha + chr3R 20971927 intron Atpalpha + chr3R_13_20970001 chr3R_20970001 RAL-843 2986 chr3R 21020361 21020427 chr3R 21020487 21020553 33 126 10.0 9.5 9.8 3.1 192 chr3R 21020361 3` UTR Rlip + chr3R 21020457 3` UTR Rlip + chr3R 21020553 3` UTR Rlip + chr3R_33_21020001 chr3R_21020001 RAL-843 2987 chr3R 21041049 21041126 chr3R 21041252 21041300 33 201 10.0 8.5 9.2 3.2 251 chr3R 21041049 exon Dhc93AB - chr3R 21041174 intron Dhc93AB - chr3R 21041300 intron Dhc93AB - chr3R_33_21040001 chr3R_21040001 RAL-843 2988 chr3R 21074809 21074819 chr3R 21075070 21075090 7 270 6.0 12.5 9.2 0.7 281 chr3R 21074809 intron dmrt93B + chr3R 21074950 intron dmrt93B + chr3R 21075090 intron dmrt93B + chr3R_7_21070001 chr3R_21070001 RAL-843 2989 chr3R 21076306 21076315 chr3R 21076419 21076444 4 123 10.5 8.0 9.2 0.4 138 chr3R 21076306 exon dmrt93B + chr3R 21076375 intron dmrt93B + chr3R 21076444 intron dmrt93B + chr3R_4_21075001 chr3R_21075001 RAL-843 2990 chr3R 21076318 21076332 chr3R 21076397 21076461 11 119 7.0 5.0 6.0 1.6 143 chr3R 21076318 exon dmrt93B + chr3R 21076390 intron dmrt93B + chr3R 21076461 intron dmrt93B + chr3R_11_21075001 chr3R_21075001 RAL-843 2991 chr3R 21107988 21108067 chr3R 21108299 21108378 13 310 4.0 3.0 3.5 2.9 390 chr3R 21107988 intergenic Sec15 -,rtet + chr3R 21108183 intergenic Sec15 -,rtet + chr3R 21108378 intergenic rtet +,Sec15 - chr3R_13_21105001 chr3R_21105001 RAL-843 2992 chr3R 21129777 21130014 chr3R 21129916 21130141 10 132 0.0 0.0 0.0 10.0 364 chr3R 21129777 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129959 intergenic Obp93a -,Ice2 +,CG5793 + chr3R 21130141 intergenic Ice2 +,Obp93a - chr3R_10_21125001 chr3R_21125001 RAL-843 2993 chr3R 21132581 21132631 chr3R 21132714 21132764 15 133 10.0 0.0 5.0 2.5 183 chr3R 21132581 3` UTR Ice2 + chr3R 21132672 3` UTR Ice2 + chr3R 21132764 exon CG7009 - chr3R_15_21130001 chr3R_21130001 RAL-843 2994 chr3R 21141642 21141702 chr3R 21150160 21150210 Tirant 27 8522 10.0 10.5 10.2 2.4 8568 chr3R 21141642 intron SNF4Agamma + chr3R 21145926 intron SNF4Agamma + chr3R 21150210 intron SNF4Agamma + chr3R_27_21145001 chr3R_21145001 RAL-843 2995 chr3R 21155747 21155762 chr3R 21155888 21155903 4 140 9.0 13.0 11.0 0.3 156 chr3R 21155747 intron SNF4Agamma + chr3R 21155825 intron SNF4Agamma + chr3R 21155903 intron SNF4Agamma + chr3R_4_21155001 chr3R_21155001 RAL-843 2996 chr3R 21163261 21163273 chr3R 21163359 21163401 5 122 9.5 21.0 15.2 0.3 140 chr3R 21163261 intron SNF4Agamma + chr3R 21163331 intron SNF4Agamma + chr3R 21163401 intron SNF4Agamma + chr3R_5_21160001 chr3R_21160001 RAL-843 2997 chr3R 21214694 21214756 chr3R 21214916 21214978 9 222 4.0 7.0 5.5 1.4 284 chr3R 21214694 intergenic CG5862 + chr3R 21214836 intergenic CG5862 + chr3R 21214978 intergenic CG5862 + chr3R_9_21210001 chr3R_21210001 RAL-843 2998 chr3R 21240403 21240470 chr3R 21240545 21240612 32 142 7.5 6.5 7.0 4.0 209 chr3R 21240403 intergenic not near genes chr3R 21240508 intergenic not near genes chr3R 21240612 intergenic not near genes chr3R_32_21240001 chr3R_21240001 RAL-843 2999 chr3R 21295278 21295348 chr3R 21295424 21295495 21 145 10.0 8.0 9.0 2.1 217 chr3R 21295278 intergenic not near genes chr3R 21295386 intergenic not near genes chr3R 21295495 intergenic not near genes chr3R_21_21295001 chr3R_21295001 RAL-843 3000 chr3R 21379432 21379465 chr3R 21379633 21379666 11 201 6.5 8.5 7.5 1.3 234 chr3R 21379432 intron tin + chr3R 21379549 intron tin + chr3R 21379666 intron tin + chr3R_11_21375001 chr3R_21375001 RAL-843 3001 chr3R 21383269 21383297 chr3R 21383399 21383419 19 129 0.0 3.0 1.5 7.6 150 chr3R 21383269 intergenic not near genes chr3R 21383344 intergenic not near genes chr3R 21383419 intergenic not near genes chr3R_19_21380001 chr3R_21380001 RAL-843 3002 chr3R 21385882 21385957 chr3R 21386009 21386084 29 125 5.0 4.5 4.8 5.0 202 chr3R 21385882 intergenic not near genes chr3R 21385983 intergenic not near genes chr3R 21386084 intergenic not near genes chr3R_29_21385001 chr3R_21385001 RAL-843 3003 chr3R 21408492 21408543 chr3R 21408614 21408625 15 116 14.0 3.5 8.8 1.5 133 chr3R 21408492 intergenic CheB93a + chr3R 21408558 intergenic CheB93a + chr3R 21408625 intergenic CheB93a +,CheB93b + chr3R_15_21405001 chr3R_21405001 RAL-843 3004 chr3R 21420742 21420752 chr3R 21420885 21420896 5 143 12.0 15.0 13.5 0.3 154 chr3R 21420742 intron lbl - chr3R 21420819 intron lbl - chr3R 21420896 intron lbl - chr3R_5_21420001 chr3R_21420001 RAL-843 3005 chr3R 21442793 21442800 chr3R 21442927 21442934 4 134 23.0 8.0 15.5 0.2 141 chr3R 21442793 intron lbe - chr3R 21442864 intron lbe - chr3R 21442934 intron lbe - chr3R_4_21440001 chr3R_21440001 RAL-843 3006 chr3R 21442801 21442862 chr3R 21442920 21442996 37 132 6.0 7.5 6.8 4.7 195 chr3R 21442801 intron lbe - chr3R 21442898 intron lbe - chr3R 21442996 intron lbe - chr3R_37_21440001 chr3R_21440001 RAL-843 3007 chr3R 21460955 21461008 chr3R 21461095 21461148 9 140 6.5 0.0 3.2 2.1 193 chr3R 21460955 intergenic not near genes chr3R 21461052 intergenic not near genes chr3R 21461148 intergenic not near genes chr3R_9_21460001 chr3R_21460001 RAL-843 3008 chr3R 21464360 21464426 chr3R 21464496 21464560 11 134 3.5 3.0 3.2 2.6 200 chr3R 21464360 intergenic not near genes chr3R 21464460 intergenic not near genes chr3R 21464560 intergenic not near genes chr3R_11_21460001 chr3R_21460001 RAL-843 3009 chr3R 21471971 21472032 chr3R 21472102 21472103 25 128 8.5 13.5 11.0 2.1 132 chr3R 21471971 intergenic not near genes chr3R 21472037 intergenic not near genes chr3R 21472103 intergenic not near genes chr3R_25_21470001 chr3R_21470001 RAL-843 3010 chr3R 21518216 21518272 chr3R 21518346 21518366 12 129 0.0 10.5 5.2 1.9 150 chr3R 21518216 intergenic not near genes chr3R 21518291 intergenic not near genes chr3R 21518366 intergenic not near genes chr3R_12_21515001 chr3R_21515001 RAL-843 3011 chr3R 21520097 21520128 chr3R 21520241 21520272 12 144 7.5 13.0 10.2 1.1 175 chr3R 21520097 intergenic not near genes chr3R 21520184 intergenic not near genes chr3R 21520272 intergenic not near genes chr3R_12_21520001 chr3R_21520001 RAL-843 3012 chr3R 21554789 21554856 chr3R 21554933 21555000 17 144 8.0 8.5 8.2 1.8 211 chr3R 21554789 exon slou - chr3R 21554894 intron slou - chr3R 21555000 intron slou - chr3R_17_21550001 chr3R_21550001 RAL-843 3013 chr3R 21725668 21725682 chr3R 21725854 21725868 5 186 0.0 14.5 7.2 0.6 200 chr3R 21725668 intergenic not near genes chr3R 21725768 intergenic not near genes chr3R 21725868 intergenic not near genes chr3R_5_21725001 chr3R_21725001 RAL-843 3014 chr3R 21731752 21731796 chr3R 21731910 21731954 5 157 12.5 4.0 8.2 0.5 202 chr3R 21731752 intergenic not near genes chr3R 21731853 intergenic not near genes chr3R 21731954 intergenic not near genes chr3R_5_21730001 chr3R_21730001 RAL-843 3015 chr3R 21733960 21734000 chr3R 21734121 21734162 5 162 9.5 6.0 7.8 0.6 202 chr3R 21733960 intergenic not near genes chr3R 21734061 intergenic not near genes chr3R 21734162 intergenic not near genes chr3R_5_21730001 chr3R_21730001 RAL-843 3016 chr3R 21761077 21761106 chr3R 21768519 21768534 mdg1 13 7435 18.5 10.5 14.5 0.8 7457 chr3R 21761077 exon CG42335 + chr3R 21764806 intron CG42335 + chr3R 21768534 exon CG42335 + chr3R_13_21760001 chr3R_21760001 RAL-843 3017 chr3R 21761111 21761149 chr3R 21768513 21768574 mdg1 14 7433 11.5 8.0 9.8 1.3 7463 chr3R 21761111 exon CG42335 + chr3R 21764842 intron CG42335 + chr3R 21768574 exon CG42335 + chr3R_14_21760001 chr3R_21760001 RAL-843 3018 chr3R 21784807 21784884 chr3R 21784955 21785032 7 148 8.0 2.5 5.2 1.1 225 chr3R 21784807 3` UTR,3` UTR CASK -,CRG - chr3R 21784920 3` UTR,3` UTR CASK -,CRG - chr3R 21785032 3` UTR,3` UTR CASK -,CRG - chr3R_7_21780001 chr3R_21780001 RAL-843 3019 chr3R 21800445 21800514 chr3R 21800580 21800649 27 134 6.5 9.0 7.8 3.1 204 chr3R 21800445 intron CASK - chr3R 21800547 intron CASK - chr3R 21800649 intron CASK - chr3R_27_21800001 chr3R_21800001 RAL-843 3020 chr3R 21824915 21824990 chr3R 21825049 21825090 32 129 10.0 8.5 9.2 3.1 175 chr3R 21824915 intergenic not near genes chr3R 21825002 intergenic not near genes chr3R 21825090 intergenic not near genes chr3R_32_21825001 chr3R_21825001 RAL-843 3021 chr3R 21903492 21903635 chr3R 21903622 21903782 15 140 0.0 0.0 0.0 15.0 290 chr3R 21903492 intron CG6678 + chr3R 21903637 intron CG6678 + chr3R 21903782 intron CG6678 + chr3R_15_21900001 chr3R_21900001 RAL-843 3022 chr3R 9620954 9620956 chr3R 21907534 21907534 4 12286579 24.0 34.0 29.0 0.1 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-843 3023 chr3R 21907534 21907534 chr3R 28831801 28831805 14 6924268 37.0 30.5 33.8 0.4 6924271 chr3R 21907534 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831805 intron WASp - chr3R_14_25365001 chr3R_25365001 RAL-843 3024 chr3R 21907535 21907535 chr3R 28831799 28831802 26 6924266 37.0 31.0 34.0 0.7 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-843 3025 chr3R 21907536 21907536 chr3R 28831801 28831802 40 6924266 36.5 30.5 33.5 1.2 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_40_25365001 chr3R_25365001 RAL-843 3026 chr3R 21908370 21908431 chr3R 21908491 21908560 25 125 5.5 5.0 5.2 4.0 190 chr3R 21908370 intergenic not near genes chr3R 21908465 intergenic not near genes chr3R 21908560 intergenic not near genes chr3R_25_21905001 chr3R_21905001 RAL-843 3027 chr3R 21932871 21932931 chr3R 21933013 21933069 23 134 7.5 9.0 8.2 2.5 198 chr3R 21932871 intergenic not near genes chr3R 21932970 intergenic not near genes chr3R 21933069 intergenic not near genes chr3R_23_21930001 chr3R_21930001 RAL-843 3028 chr3R 21937186 21937232 chr3R 21937313 21937359 25 126 8.5 18.5 13.5 1.7 173 chr3R 21937186 intergenic not near genes chr3R 21937272 intergenic not near genes chr3R 21937359 intergenic not near genes chr3R_25_21935001 chr3R_21935001 RAL-843 3029 chr3R 22084569 22084624 chr3R 22084708 22084763 14 139 6.0 11.0 8.5 1.5 194 chr3R 22084569 intergenic not near genes chr3R 22084666 intergenic not near genes chr3R 22084763 intergenic not near genes chr3R_14_22080001 chr3R_22080001 RAL-843 3030 chr3R 22099622 22099691 chr3R 22099792 22099861 25 168 6.5 6.5 6.5 3.3 239 chr3R 22099622 intron CG5778 - chr3R 22099742 intron CG5778 - chr3R 22099861 intron CG5778 - chr3R_25_22095001 chr3R_22095001 RAL-843 3031 chr3R 22108329 22108389 chr3R 22108589 22108655 25 270 4.5 9.5 7.0 3.1 326 chr3R 22108329 intron CG5778 - chr3R 22108492 intron CG5778 - chr3R 22108655 intron CG5778 - chr3R_25_22105001 chr3R_22105001 RAL-843 3032 chr3R 22142178 22142228 chr3R 22142303 22142356 17 128 2.0 5.5 3.8 3.5 178 chr3R 22142178 5` UTR SKIP + chr3R 22142267 intron SKIP + chr3R 22142356 intron SKIP + chr3R_17_22140001 chr3R_22140001 RAL-843 3033 chr3R 22239452 22239525 chr3R 22248562 22248623 roo 19 9099 4.0 2.0 3.0 4.8 9171 chr3R 22239452 intron SKIP + chr3R 22244038 intron SKIP + chr3R 22248623 intron SKIP + chr3R_19_22240001 chr3R_22240001 RAL-843 3034 chr3R 22258384 22258464 chr3R 22258537 22258544 8 143 3.5 9.0 6.2 1.1 160 chr3R 22258384 intron SKIP + chr3R 22258464 intron SKIP + chr3R 22258544 intron SKIP + chr3R_8_22255001 chr3R_22255001 RAL-843 3035 chr3R 22272299 22272373 chr3R 22272431 22272478 39 129 8.0 7.5 7.8 4.4 179 chr3R 22272299 intron SKIP + chr3R 22272388 intron SKIP + chr3R 22272478 intron SKIP + chr3R_39_22270001 chr3R_22270001 RAL-843 3036 chr3R 22328897 22328947 chr3R 22331546 22331596 22 2650 48.0 71.5 59.8 0.4 2699 chr3R 22328897 intergenic CG7080 + chr3R 22330246 exon CG7080 + chr3R 22331596 intron CG33721 + chr3R_22_22330001 chr3R_22330001 RAL-843 3037 chr3R 22336883 22336925 chr3R 22337015 22337057 9 132 2.5 6.5 4.5 1.6 174 chr3R 22336883 intron CG5388 - chr3R 22336970 intron CG5388 - chr3R 22337057 intron CG5388 - chr3R_9_22335001 chr3R_22335001 RAL-843 3038 chr3R 22339530 22339551 chr3R 22339669 22339690 7 139 26.5 10.5 18.5 0.4 160 chr3R 22339530 intron CG5388 - chr3R 22339610 intron CG5388 - chr3R 22339690 intron CG5388 - chr3R_7_22335001 chr3R_22335001 RAL-843 3039 chr3R 22339553 22339593 chr3R 22339662 22339732 26 130 12.0 8.5 10.2 2.3 179 chr3R 22339553 intron CG5388 - chr3R 22339642 intron CG5388 - chr3R 22339732 intron CG5388 - chr3R_26_22335001 chr3R_22335001 RAL-843 3040 chr3R 22428544 22428608 chr3R 22428670 22428734 31 124 10.0 8.0 9.0 3.1 190 chr3R 22428544 intron CG13847 - chr3R 22428639 intron CG13847 - chr3R 22428734 intron CG13847 - chr3R_31_22425001 chr3R_22425001 RAL-843 3041 chr3R 22433058 22433096 chr3R 22433208 22433236 13 148 17.0 12.0 14.5 0.8 178 chr3R 22433058 intron CG13847 - chr3R 22433147 intron CG13847 - chr3R 22433236 intron CG13847 - chr3R_13_22430001 chr3R_22430001 RAL-843 3042 chr3R 22450503 22450572 chr3R 22453193 22453232 NOF 23 2686 7.5 8.5 8.0 2.6 2729 chr3R 22450503 intron CG34376 + chr3R 22451868 intron CG34376 + chr3R 22453232 intron CG34376 + chr3R_23_22450001 chr3R_22450001 RAL-843 3043 chr3R 22507742 22507774 chr3R 22507875 22507908 15 128 15.5 7.0 11.2 1.2 166 chr3R 22507742 intron Octbeta1R + chr3R 22507825 intron Octbeta1R + chr3R 22507908 intron Octbeta1R + chr3R_15_22505001 chr3R_22505001 RAL-843 3044 chr3R 22507775 22507816 chr3R 22507874 22507940 18 124 6.5 7.0 6.8 2.3 165 chr3R 22507775 intron Octbeta1R + chr3R 22507858 intron Octbeta1R + chr3R 22507940 intron Octbeta1R + chr3R_18_22505001 chr3R_22505001 RAL-843 3045 chr3R 22538421 22538469 chr3R 22538536 22538604 23 132 10.0 13.5 11.8 1.8 183 chr3R 22538421 intron CG5326 - chr3R 22538512 intron CG5326 - chr3R 22538604 intron CG5326 - chr3R_23_22535001 chr3R_22535001 RAL-843 3046 chr3R 22657698 22657741 chr3R 22657823 22657876 12 134 3.5 11.0 7.2 1.5 178 chr3R 22657698 intron wake + chr3R 22657787 intron wake + chr3R 22657876 intron wake + chr3R_12_22655001 chr3R_22655001 RAL-843 3047 chr3R 22672252 22672327 chr3R 22672395 22672470 20 143 6.5 7.5 7.0 2.5 218 chr3R 22672252 intron wake + chr3R 22672361 intron wake + chr3R 22672470 intron wake + chr3R_20_22670001 chr3R_22670001 RAL-843 3048 chr3R 22797711 22797927 chr3R 22797847 22798073 41 137 0.0 0.0 0.0 41.0 362 chr3R 22797711 intergenic not near genes chr3R 22797892 intergenic not near genes chr3R 22798073 intergenic not near genes chr3R_41_22795001 chr3R_22795001 RAL-843 3049 chr3R 22840407 22840464 chr3R 22840535 22840576 17 116 6.0 15.5 10.8 1.4 169 chr3R 22840407 intergenic not near genes chr3R 22840492 intergenic not near genes chr3R 22840576 intergenic not near genes chr3R_17_22840001 chr3R_22840001 RAL-843 3050 chr3R 22847109 22847180 chr3R 22847449 22847520 23 340 8.5 5.5 7.0 2.9 411 chr3R 22847109 intergenic not near genes chr3R 22847314 intergenic not near genes chr3R 22847520 intergenic not near genes chr3R_23_22845001 chr3R_22845001 RAL-843 3051 chr3R 22867405 22867465 chr3R 22867567 22867646 21 171 9.0 10.0 9.5 2.0 241 chr3R 22867405 intergenic not near genes chr3R 22867526 intergenic not near genes chr3R 22867646 intergenic not near genes chr3R_21_22865001 chr3R_22865001 RAL-843 3052 chr3R 22880557 22880614 chr3R 22880684 22880727 15 122 9.5 14.0 11.8 1.2 170 chr3R 22880557 intergenic not near genes chr3R 22880642 intergenic not near genes chr3R 22880727 intergenic not near genes chr3R_15_22880001 chr3R_22880001 RAL-843 3053 chr3R 22880883 22880949 chr3R 22881071 22881077 19 185 7.0 4.0 5.5 2.9 194 chr3R 22880883 intergenic not near genes chr3R 22880980 intergenic not near genes chr3R 22881077 intergenic not near genes chr3R_19_22880001 chr3R_22880001 RAL-843 3054 chr3R 22881190 22881231 chr3R 22884945 22884955 Doc 14 3753 5.5 14.5 10.0 1.3 3765 chr3R 22881190 intergenic not near genes chr3R 22883072 intergenic not near genes chr3R 22884955 intergenic not near genes chr3R_14_22880001 chr3R_22880001 RAL-843 3055 chr3R 22927652 22927718 chr3R 22927786 22927852 22 129 9.0 8.5 8.8 2.2 200 chr3R 22927652 intron klg + chr3R 22927752 intron klg + chr3R 22927852 intron klg + chr3R_22_22925001 chr3R_22925001 RAL-843 3056 chr3R 22945915 22945956 chr3R 22946045 22946086 4 130 4.0 11.0 7.5 0.5 171 chr3R 22945915 intron klg + chr3R 22946000 intron klg + chr3R 22946086 intron klg + chr3R_4_22945001 chr3R_22945001 RAL-843 3057 chr3R 22974271 22974310 chr3R 22974378 22974444 19 129 0.0 4.0 2.0 6.3 173 chr3R 22974271 intergenic not near genes chr3R 22974358 intergenic not near genes chr3R 22974444 intergenic not near genes chr3R_19_22970001 chr3R_22970001 RAL-843 3058 chr3R 22993464 22993530 chr3R 22993647 22993715 26 182 6.0 9.0 7.5 3.1 251 chr3R 22993464 intron Nha2 - chr3R 22993590 intron Nha2 - chr3R 22993715 intron Nha2 - chr3R_26_22990001 chr3R_22990001 RAL-843 3059 chr3R 23038968 23039034 chr3R 23039098 23039102 15 110 19.5 6.0 12.8 1.1 134 chr3R 23038968 intergenic not near genes chr3R 23039035 intergenic not near genes chr3R 23039102 intergenic not near genes chr3R_15_23035001 chr3R_23035001 RAL-843 3060 chr3R 23070608 23070697 chr3R 23070738 23070825 10 134 0.5 0.0 0.2 8.3 217 chr3R 23070608 3` UTR CG13830 - chr3R 23070716 3` UTR CG13830 - chr3R 23070825 3` UTR CG13830 - chr3R_10_23070001 chr3R_23070001 RAL-843 3061 chr3R 23073621 23073672 chr3R 23073760 23073810 24 135 9.5 5.5 7.5 2.8 189 chr3R 23073621 intron CG13830 - chr3R 23073716 intron CG13830 - chr3R 23073810 intron CG13830 - chr3R_24_23070001 chr3R_23070001 RAL-843 3062 chr3R 23073673 23073689 chr3R 23073752 23073791 7 108 7.5 4.0 5.8 1.0 118 chr3R 23073673 intron CG13830 - chr3R 23073732 intron CG13830 - chr3R 23073791 intron CG13830 - chr3R_7_23070001 chr3R_23070001 RAL-843 3063 chr3R 23114125 23114127 chr3R 23114253 23114255 5 128 20.0 7.0 13.5 0.3 130 chr3R 23114125 3` UTR Rassf - chr3R 23114190 3` UTR Rassf - chr3R 23114255 3` UTR Rassf - chr3R_5_23110001 chr3R_23110001 RAL-843 3064 chr3R 23114129 23114188 chr3R 23114251 23114316 29 128 8.5 6.5 7.5 3.4 187 chr3R 23114129 3` UTR Rassf - chr3R 23114222 3` UTR Rassf - chr3R 23114316 3` UTR Rassf - chr3R_29_23110001 chr3R_23110001 RAL-843 3065 chr3R 23166054 23166121 chr3R 23166183 23166250 20 129 5.0 5.5 5.2 3.2 196 chr3R 23166054 intergenic not near genes chr3R 23166152 intergenic not near genes chr3R 23166250 intergenic not near genes chr3R_20_23165001 chr3R_23165001 RAL-843 3066 chr3R 23291209 23291278 chr3R 23291345 23291387 27 131 12.0 10.5 11.2 2.2 178 chr3R 23291209 3` UTR pnt - chr3R 23291298 3` UTR pnt - chr3R 23291387 exon pnt - chr3R_27_23290001 chr3R_23290001 RAL-843 3067 chr3R 23319656 23319676 chr3R 23319784 23319804 9 128 0.0 14.5 7.2 1.1 148 chr3R 23319656 intron pnt - chr3R 23319730 intron pnt - chr3R 23319804 intron pnt - chr3R_9_23315001 chr3R_23315001 RAL-843 3068 chr3R 23337026 23337038 chr3R 23337121 23337169 6 125 3.5 0.5 2.0 2.0 143 chr3R 23337026 intron pnt - chr3R 23337098 intron pnt - chr3R 23337169 intron pnt - chr3R_6_23335001 chr3R_23335001 RAL-843 3069 chr3R 23338239 23338268 chr3R 23338365 23338393 10 131 3.5 7.5 5.5 1.5 154 chr3R 23338239 intron pnt - chr3R 23338316 intron pnt - chr3R 23338393 intron pnt - chr3R_10_23335001 chr3R_23335001 RAL-843 3070 chr3R 23558356 23558428 chr3R 23560187 23560248 Bari1 25 1830 3.5 6.0 4.8 4.3 1892 chr3R 23558356 intron beat-IV + chr3R 23559302 intron beat-IV + chr3R 23560248 intron beat-IV + chr3R_25_23555001 chr3R_23555001 RAL-843 3071 chr3R 23572708 23572746 chr3R 23572873 23572898 6 166 11.0 5.0 8.0 0.7 190 chr3R 23572708 intron beat-IV + chr3R 23572803 intron beat-IV + chr3R 23572898 intron beat-IV + chr3R_6_23570001 chr3R_23570001 RAL-843 3072 chr3R 23572747 23572781 chr3R 23572872 23572916 18 150 5.0 4.5 4.8 3.1 169 chr3R 23572747 intron beat-IV + chr3R 23572832 intron beat-IV + chr3R 23572916 intron beat-IV + chr3R_18_23570001 chr3R_23570001 RAL-843 3073 chr3R 23626281 23626288 chr3R 23626429 23626437 5 149 28.5 15.0 21.8 0.2 156 chr3R 23626281 intron CG31145 - chr3R 23626359 intron CG31145 - chr3R 23626437 intron CG31145 - chr3R_5_23625001 chr3R_23625001 RAL-843 3074 chr3R 23626290 23626349 chr3R 23626423 23626498 38 147 11.0 13.0 12.0 2.9 208 chr3R 23626290 intron CG31145 - chr3R 23626394 intron CG31145 - chr3R 23626498 intron CG31145 - chr3R_38_23625001 chr3R_23625001 RAL-843 3075 chr3R 23684664 23684673 chr3R 23685200 23685208 roo 5 536 18.0 14.0 16.0 0.3 544 chr3R 23684664 exon CG18754 + chr3R 23684936 intron CG18754 + chr3R 23685208 exon CG18754 + chr3R_5_23680001 chr3R_23680001 RAL-843 3076 chr3R 23684683 23684723 chr3R 23685188 23685226 roo 19 519 8.5 11.0 9.8 1.8 543 chr3R 23684683 exon CG18754 + chr3R 23684954 intron CG18754 + chr3R 23685226 exon CG18754 + chr3R_19_23680001 chr3R_23680001 RAL-843 3077 chr3R 23783428 23783506 chr3R 23783580 23783658 22 151 9.5 10.5 10.0 2.0 230 chr3R 23783428 intron mbc + chr3R 23783543 intron mbc + chr3R 23783658 intron mbc + chr3R_22_23780001 chr3R_23780001 RAL-843 3078 chr3R 23835362 23835424 chr3R 23844562 23844624 roo 17 9200 12.0 9.5 10.8 1.4 9262 chr3R 23835362 intron CG34355 + chr3R 23839993 intron CG34355 + chr3R 23844624 intron CG34355 + chr3R_17_23835001 chr3R_23835001 RAL-843 3079 chr3R 23851038 23851087 chr3R 23858754 23858803 opus 18 7714 5.0 13.0 9.0 1.8 7765 chr3R 23851038 3` UTR CG34355 + chr3R 23854920 intergenic not near genes chr3R 23858803 intergenic not near genes chr3R_18_23850001 chr3R_23850001 RAL-843 3080 chr3R 23944882 23944931 chr3R 23944997 23945056 22 130 6.5 4.5 5.5 3.4 174 chr3R 23944882 intron CG12268 - chr3R 23944969 intron CG12268 - chr3R 23945056 exon CG12268 - chr3R_22_23940001 chr3R_23940001 RAL-843 3081 chr3R 23948991 23949074 chr3R 23949118 23949201 38 127 7.0 8.0 7.5 4.5 210 chr3R 23948991 intergenic not near genes chr3R 23949096 intergenic not near genes chr3R 23949201 intergenic not near genes chr3R_38_23945001 chr3R_23945001 RAL-843 3082 chr3R 23981557 23981633 chr3R 23983354 23983435 35 1798 54.5 54.5 54.5 0.6 1878 chr3R 23981557 intron CG31140 + chr3R 23982496 3` UTR CG31140 + chr3R 23983435 intergenic CR31451 +,CG31140 + chr3R_35_23980001 chr3R_23980001 RAL-843 3083 chr3R 24011619 24011680 chr3R 24011752 24011813 22 133 7.5 12.0 9.8 2.0 194 chr3R 24011619 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011813 intron KrT95D - chr3R_22_24010001 chr3R_24010001 RAL-843 3084 chr3R 24021578 24021656 chr3R 24021718 24021796 23 140 10.0 6.0 8.0 2.6 218 chr3R 24021578 intron KrT95D - chr3R 24021687 intron KrT95D - chr3R 24021796 intron KrT95D - chr3R_23_24020001 chr3R_24020001 RAL-843 3085 chr3R 24072085 24072121 chr3R 24072571 24072591 jockey 9 484 11.5 8.5 10.0 0.8 506 chr3R 24072085 intron 4EHP - chr3R 24072338 intron 4EHP - chr3R 24072591 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-843 3086 chr3R 24074517 24074590 chr3R 24074643 24074716 23 126 8.5 9.0 8.8 2.3 199 chr3R 24074517 intron 4EHP - chr3R 24074616 intron 4EHP - chr3R 24074716 intron 4EHP - chr3R_23_24070001 chr3R_24070001 RAL-843 3087 chr3R 24076884 24076914 chr3R 24078401 24078431 hobo 8 1516 14.5 12.0 13.2 0.6 1547 chr3R 24076884 intron 4EHP - chr3R 24077658 intron 4EHP - chr3R 24078431 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-843 3088 chr3R 24076917 24076938 chr3R 24078392 24078455 hobo 12 1511 10.5 9.5 10.0 1.1 1538 chr3R 24076917 intron 4EHP - chr3R 24077686 intron 4EHP - chr3R 24078455 intron 4EHP - chr3R_12_24075001 chr3R_24075001 RAL-843 3089 chr3R 24100407 24100483 chr3R 24100552 24100628 26 145 8.5 6.0 7.2 3.2 221 chr3R 24100407 intron 4EHP - chr3R 24100518 intron 4EHP - chr3R 24100628 intron 4EHP - chr3R_26_24100001 chr3R_24100001 RAL-843 3090 chr3R 24110524 24110586 chr3R 24110660 24110722 36 136 12.5 14.0 13.2 2.5 198 chr3R 24110524 exon CG13605 - chr3R 24110623 intron CG13605 - chr3R 24110722 intron CG13605 - chr3R_36_24110001 chr3R_24110001 RAL-843 3091 chr3R 24173503 24173582 chr3R 24173635 24173714 16 132 6.5 6.0 6.2 2.2 211 chr3R 24173503 intron CG13606 + chr3R 24173608 intron CG13606 + chr3R 24173714 intron CG13606 + chr3R_16_24170001 chr3R_24170001 RAL-843 3092 chr3R 24199698 24199769 chr3R 24199828 24199867 20 125 5.5 3.5 4.5 3.6 169 chr3R 24199698 intron twin - chr3R 24199782 intron twin - chr3R 24199867 intron twin - chr3R_20_24195001 chr3R_24195001 RAL-843 3093 chr3R 24207176 24207232 chr3R 24212302 24212359 flea 14 5125 16.5 9.5 13.0 1.0 5183 chr3R 24207176 intron twin - chr3R 24209768 intron twin - chr3R 24212359 intron twin - chr3R_14_24205001 chr3R_24205001 RAL-843 3094 chr3R 24207235 24207241 chr3R 24212301 24212368 flea 5 5115 15.5 9.5 12.5 0.4 5133 chr3R 24207235 intron twin - chr3R 24209802 intron twin - chr3R 24212368 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-843 3095 chr3R 24423985 24424060 chr3R 24424261 24424337 14 272 6.5 7.0 6.8 1.8 352 chr3R 24423985 intron nAChRalpha1 - chr3R 24424161 intron nAChRalpha1 - chr3R 24424337 intron nAChRalpha1 - chr3R_14_24420001 chr3R_24420001 RAL-843 3096 chr3R 24426243 24426313 chr3R 24426550 24426605 30 305 5.0 6.0 5.5 4.6 362 chr3R 24426243 intron nAChRalpha1 - chr3R 24426424 intron nAChRalpha1 - chr3R 24426605 intron nAChRalpha1 - chr3R_30_24425001 chr3R_24425001 RAL-843 3097 chr3R 24433301 24433372 chr3R 24433496 24433567 35 193 7.5 7.0 7.2 4.3 266 chr3R 24433301 intron nAChRalpha1 - chr3R 24433434 intron nAChRalpha1 - chr3R 24433567 intron nAChRalpha1 - chr3R_35_24430001 chr3R_24430001 RAL-843 3098 chr3R 24434194 24434251 chr3R 24434321 24434371 22 127 11.5 8.0 9.8 2.0 177 chr3R 24434194 intron nAChRalpha1 - chr3R 24434282 intron nAChRalpha1 - chr3R 24434371 intron nAChRalpha1 - chr3R_22_24430001 chr3R_24430001 RAL-843 3099 chr3R 24444131 24444208 chr3R 24444340 24444411 22 205 4.5 5.5 5.0 3.7 280 chr3R 24444131 intron nAChRalpha1 - chr3R 24444271 intron nAChRalpha1 - chr3R 24444411 intron nAChRalpha1 - chr3R_22_24440001 chr3R_24440001 RAL-843 3100 chr3R 24493235 24493302 chr3R 24493514 24493581 BS 19 279 8.5 7.0 7.8 2.2 346 chr3R 24493235 intergenic not near genes chr3R 24493408 intergenic not near genes chr3R 24493581 intergenic not near genes chr3R_19_24490001 chr3R_24490001 RAL-843 3101 chr3R 24527763 24527825 chr3R 24527904 24527966 18 140 10.0 3.5 6.8 2.3 203 chr3R 24527763 intergenic CG13618 +,CG6607 + chr3R 24527864 intergenic CG6607 +,CG13618 + chr3R 24527966 intergenic CG6607 +,CG13618 + chr3R_18_24525001 chr3R_24525001 RAL-843 3102 chr3R 24594628 24594664 chr3R 24594918 24594954 pogo 17 290 10.5 16.0 13.2 1.2 326 chr3R 24594628 intron mld + chr3R 24594791 intron mld + chr3R 24594954 intron mld + chr3R_17_24590001 chr3R_24590001 RAL-843 3103 chr3R 24667555 24667591 chr3R 24667682 24667718 12 127 9.5 1.0 5.2 1.9 163 chr3R 24667555 intron slo + chr3R 24667636 intron slo + chr3R 24667718 intron slo + chr3R_12_24665001 chr3R_24665001 RAL-843 3104 chr3R 24670134 24670194 chr3R 24670269 24670329 11 135 5.0 0.0 2.5 3.1 195 chr3R 24670134 intron slo + chr3R 24670232 intron slo + chr3R 24670329 intron slo + chr3R_11_24670001 chr3R_24670001 RAL-843 3105 chr3R 24730047 24730108 chr3R 24732475 24732501 Doc 19 2425 6.5 5.0 5.8 2.8 2454 chr3R 24730047 intron tok + chr3R 24731274 intron tok + chr3R 24732501 intron tok + chr3R_19_24730001 chr3R_24730001 RAL-843 3106 chr3R 24789934 24790012 chr3R 24790129 24790207 37 190 5.0 10.0 7.5 4.4 273 chr3R 24789934 intron,5` UTR Ets96B +,CG13634 - chr3R 24790070 intron,5` UTR Ets96B +,CG13634 - chr3R 24790207 intron Ets96B + chr3R_37_24790001 chr3R_24790001 RAL-843 3107 chr3R 24842056 24842128 chr3R 24842191 24842264 23 131 9.0 7.0 8.0 2.6 208 chr3R 24842056 5` UTR Esp + chr3R 24842160 5` UTR Esp + chr3R 24842264 5` UTR Esp + chr3R_23_24840001 chr3R_24840001 RAL-843 3108 chr3R 24893439 24893486 chr3R 24893569 24893616 14 130 4.0 8.0 6.0 2.0 177 chr3R 24893439 intron CG31121 - chr3R 24893528 intron CG31121 - chr3R 24893616 intron CG31121 - chr3R_14_24890001 chr3R_24890001 RAL-843 3109 chr3R 24912437 24912512 chr3R 24912569 24912639 32 132 5.5 0.0 2.8 8.4 202 chr3R 24912437 intergenic not near genes chr3R 24912538 intergenic CR44267 + chr3R 24912639 intergenic CR44267 + chr3R_32_24910001 chr3R_24910001 RAL-843 3110 chr3R 24927089 24927147 chr3R 24931930 24931987 Doc 22 4840 8.5 10.5 9.5 2.1 4898 chr3R 24927089 intergenic Trf4-2 + chr3R 24929538 intergenic not near genes chr3R 24931987 intergenic CG11771 + chr3R_22_24925001 chr3R_24925001 RAL-843 3111 chr3R 24974863 24974931 chr3R 24974992 24975039 38 127 10.5 12.5 11.5 3.0 176 chr3R 24974863 intergenic not near genes chr3R 24974951 intergenic not near genes chr3R 24975039 intergenic not near genes chr3R_38_24970001 chr3R_24970001 RAL-843 3112 chr3R 24987070 24987141 chr3R 24987582 24987653 26 510 9.5 13.5 11.5 2.1 583 chr3R 24987070 intron tnc + chr3R 24987362 intron tnc + chr3R 24987653 intron tnc + chr3R_26_24985001 chr3R_24985001 RAL-843 3113 chr3R 25004849 25004920 chr3R 25004982 25005049 26 132 11.0 8.0 9.5 2.5 200 chr3R 25004849 intron tnc + chr3R 25004949 intron tnc + chr3R 25005049 intron tnc + chr3R_26_25000001 chr3R_25000001 RAL-843 3114 chr3R 25027497 25027564 chr3R 25027760 25027827 28 261 7.5 11.5 9.5 2.7 330 chr3R 25027497 intron Hr96 + chr3R 25027662 intron Hr96 + chr3R 25027827 intron Hr96 + chr3R_28_25025001 chr3R_25025001 RAL-843 3115 chr3R 25082253 25082268 chr3R 25082380 25082380 8 125 3.5 11.0 7.2 1.0 127 chr3R 25082253 intergenic fd96Ca + chr3R 25082316 intergenic fd96Ca + chr3R 25082380 intergenic fd96Ca + chr3R_8_25080001 chr3R_25080001 RAL-843 3116 chr3R 25086012 25086043 chr3R 25086138 25086169 15 125 14.0 6.5 10.2 1.3 157 chr3R 25086012 intergenic not near genes chr3R 25086090 intergenic not near genes chr3R 25086169 intergenic not near genes chr3R_15_25085001 chr3R_25085001 RAL-843 3117 chr3R 25097070 25097092 chr3R 25097247 25097269 8 177 0.0 4.5 2.2 2.5 199 chr3R 25097070 intergenic not near genes chr3R 25097170 intergenic not near genes chr3R 25097269 intergenic CG33095 +,CG33096 + chr3R_8_25095001 chr3R_25095001 RAL-843 3118 chr3R 25151031 25151083 chr3R 25151160 25151212 22 126 17.0 15.5 16.2 1.3 181 chr3R 25151031 intergenic not near genes chr3R 25151122 intergenic not near genes chr3R 25151212 intergenic not near genes chr3R_22_25150001 chr3R_25150001 RAL-843 3119 chr3R 25166322 25166389 chr3R 25166448 25166515 20 126 11.5 11.5 11.5 1.6 193 chr3R 25166322 intergenic not near genes chr3R 25166418 intergenic not near genes chr3R 25166515 intergenic not near genes chr3R_20_25165001 chr3R_25165001 RAL-843 3120 chr3R 25342283 25342363 chr3R 25342416 25342496 14 133 4.5 6.5 5.5 2.2 213 chr3R 25342283 exon rha + chr3R 25342390 exon rha + chr3R 25342496 exon rha + chr3R_14_25340001 chr3R_25340001 RAL-843 3121 chr3R 25368430 25368504 chr3R 25368598 25368676 19 168 8.5 0.0 4.2 3.7 246 chr3R 25368430 intron Fur1 - chr3R 25368553 intron Fur1 - chr3R 25368676 intron Fur1 - chr3R_19_25365001 chr3R_25365001 RAL-843 3122 chr3R 25377356 25377388 chr3R 25377494 25377526 19 137 17.0 7.5 12.2 1.4 170 chr3R 25377356 intron Fur1 - chr3R 25377441 intron Fur1 - chr3R 25377526 intron Fur1 - chr3R_19_25375001 chr3R_25375001 RAL-843 3123 chr3R 25377406 25377431 chr3R 25377491 25377569 11 133 7.5 6.0 6.8 1.4 163 chr3R 25377406 intron Fur1 - chr3R 25377488 intron Fur1 - chr3R 25377569 intron Fur1 - chr3R_11_25375001 chr3R_25375001 RAL-843 3124 chr3R 25405353 25405396 chr3R 25405479 25405523 12 124 13.5 10.0 11.8 0.9 170 chr3R 25405353 intron Fur1 - chr3R 25405438 intron Fur1 - chr3R 25405523 intron Fur1 - chr3R_12_25405001 chr3R_25405001 RAL-843 3125 chr3R 25465005 25465087 chr3R 25465132 25465214 11 120 6.5 3.5 5.0 1.8 209 chr3R 25465005 intron Fur1 - chr3R 25465110 intron Fur1 - chr3R 25465214 intron Fur1 - chr3R_11_25465001 chr3R_25465001 RAL-843 3126 chr3R 25520946 25520975 chr3R 25521095 25521124 11 148 9.0 4.0 6.5 1.5 178 chr3R 25520946 intron msi + chr3R 25521035 intron msi + chr3R 25521124 intron msi + chr3R_11_25520001 chr3R_25520001 RAL-843 3127 chr3R 25526210 25526280 chr3R 25526337 25526407 23 126 5.5 0.0 2.8 6.1 197 chr3R 25526210 intron msi + chr3R 25526308 intron msi + chr3R 25526407 intron msi + chr3R_23_25525001 chr3R_25525001 RAL-843 3128 chr3R 25570000 25570072 chr3R 25570137 25570207 18 130 11.5 11.5 11.5 1.4 207 chr3R 25570000 intron msi + chr3R 25570104 intron msi + chr3R 25570207 intron msi + chr3R_18_25570001 chr3R_25570001 RAL-843 3129 chr3R 25571846 25571873 chr3R 25571984 25572011 15 138 7.5 9.0 8.2 1.6 165 chr3R 25571846 intron msi + chr3R 25571928 intron msi + chr3R 25572011 intron msi + chr3R_15_25570001 chr3R_25570001 RAL-843 3130 chr3R 25652273 25652283 chr3R 25652400 25652410 5 127 24.0 11.0 17.5 0.3 137 chr3R 25652273 intergenic not near genes chr3R 25652342 intergenic not near genes chr3R 25652410 intergenic not near genes chr3R_5_25650001 chr3R_25650001 RAL-843 3131 chr3R 25652284 25652342 chr3R 25652398 25652469 30 125 10.0 10.5 10.2 2.7 185 chr3R 25652284 intergenic not near genes chr3R 25652376 intergenic not near genes chr3R 25652469 intergenic not near genes chr3R_30_25650001 chr3R_25650001 RAL-843 3132 chr3R 25669016 25669094 chr3R 25669160 25669227 22 140 7.0 4.5 5.8 3.2 211 chr3R 25669016 intron Lgr3 + chr3R 25669122 intron Lgr3 + chr3R 25669227 exon Lgr3 + chr3R_22_25665001 chr3R_25665001 RAL-843 3133 chr3R 25671193 25671268 chr3R 25671341 25671418 22 150 11.0 9.5 10.2 2.0 225 chr3R 25671193 intron Lgr3 + chr3R 25671306 intron Lgr3 + chr3R 25671418 intron Lgr3 + chr3R_22_25670001 chr3R_25670001 RAL-843 3134 chr3R 25725788 25725854 chr3R 25734998 25735059 roo 23 9210 5.0 7.0 6.0 3.3 9271 chr3R 25725788 intron LpR2 - chr3R 25730424 intron LpR2 - chr3R 25735059 intron LpR2 - chr3R_23_25730001 chr3R_25730001 RAL-843 3135 chr3R 25831257 25831262 chr3R 25831387 25831392 4 130 0.0 0.0 0.0 4.0 135 chr3R 25831257 intergenic Mst57Da -,Mst57Db - chr3R 25831324 intergenic Mst57Da -,Mst57Db - chr3R 25831392 intergenic Mst57Da -,Mst57Db - chr3R_4_25830001 chr3R_25830001 RAL-843 3136 chr3R 25832653 25832663 chr3R 25841884 25841895 roo 4 9232 23.0 14.0 18.5 0.2 9242 chr3R 25832653 exon alpha4GT2 + chr3R 25837274 intron alpha4GT2 + chr3R 25841895 exon alpha4GT2 + chr3R_4_25835001 chr3R_25835001 RAL-843 3137 chr3R 25832676 25832724 chr3R 25841877 25841916 roo 23 9223 8.5 12.5 10.5 2.0 9240 chr3R 25832676 exon alpha4GT2 + chr3R 25837296 intron alpha4GT2 + chr3R 25841916 exon alpha4GT2 + chr3R_23_25835001 chr3R_25835001 RAL-843 3138 chr3R 25864803 25864871 chr3R 25865111 25865179 39 304 9.0 14.0 11.5 3.1 376 chr3R 25864803 intron CG5890 + chr3R 25864991 intron CG5890 + chr3R 25865179 intron CG5890 + chr3R_39_25860001 chr3R_25860001 RAL-843 3139 chr3R 25872858 25872931 chr3R 25872993 25873066 32 135 9.0 11.0 10.0 2.9 208 chr3R 25872858 intergenic Tsp96F -,CG5890 + chr3R 25872962 3` UTR Tsp96F - chr3R 25873066 3` UTR Tsp96F - chr3R_32_25870001 chr3R_25870001 RAL-843 3140 chr3R 25905589 25905641 chr3R 25905742 25905794 19 153 8.5 3.5 6.0 2.7 205 chr3R 25905589 intron CR43259 - chr3R 25905692 intron CR43259 - chr3R 25905794 intron CR43259 - chr3R_19_25905001 chr3R_25905001 RAL-843 3141 chr3R 26030378 26030402 chr3R 26030532 26030556 12 150 9.5 26.0 17.8 0.6 178 chr3R 26030378 intergenic not near genes chr3R 26030467 intergenic not near genes chr3R 26030556 intergenic not near genes chr3R_12_26030001 chr3R_26030001 RAL-843 3142 chr3R 26108780 26108802 chr3R 26117413 26117414 Tirant 4 8626 15.5 0.0 7.8 0.5 8634 chr3R 26108780 5` UTR CG31324 + chr3R 26113097 intron CG31324 + chr3R 26117414 intron CG31324 + chr3R_4_26110001 chr3R_26110001 RAL-843 3143 chr3R 26122413 26122476 chr3R 26122539 26122602 28 125 8.5 10.0 9.2 2.7 189 chr3R 26122413 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122602 intron CG31324 + chr3R_28_26120001 chr3R_26120001 RAL-843 3144 chr3R 26126224 26126473 chr3R 26126379 26126677 14 200 13.5 38.5 26.0 0.5 453 chr3R 26126224 intron CG31324 + chr3R 26126450 intron CG31324 + chr3R 26126677 intron,5` UTR CG31324 +,CG14556 + chr3R_14_26125001 chr3R_26125001 RAL-843 3145 chr3R 26126475 26126495 chr3R 26126679 26126686 13 203 9.0 18.0 13.5 0.9 211 chr3R 26126475 intron CG31324 + chr3R 26126580 intron CG31324 + chr3R 26126686 intron,5` UTR CG31324 +,CG14556 + chr3R_13_26125001 chr3R_26125001 RAL-843 3146 chr3R 26139952 26140023 chr3R 26140080 26140130 5 116 6.0 7.0 6.5 0.7 178 chr3R 26139952 intergenic not near genes chr3R 26140041 intergenic not near genes chr3R 26140130 intergenic not near genes chr3R_5_26140001 chr3R_26140001 RAL-843 3147 chr3R 26227525 26227572 chr3R 26227651 26227706 19 134 4.0 8.0 6.0 2.7 181 chr3R 26227525 intergenic not near genes chr3R 26227616 intergenic not near genes chr3R 26227706 intergenic not near genes chr3R_19_26225001 chr3R_26225001 RAL-843 3148 chr3R 26253237 26253290 chr3R 26253707 26253772 40 478 18.0 9.5 13.8 2.7 535 chr3R 26253237 intergenic CR42745 + chr3R 26253504 intergenic not near genes chr3R 26253772 intergenic Ald - chr3R_40_26250001 chr3R_26250001 RAL-843 3149 chr3R 26266846 26266922 chr3R 26267002 26267077 20 154 6.5 5.5 6.0 2.9 231 chr3R 26266846 intron CG6154 + chr3R 26266962 intron CG6154 + chr3R 26267077 intron CG6154 + chr3R_20_26265001 chr3R_26265001 RAL-843 3150 chr3R 26301783 26301856 chr3R 26301914 26301987 28 131 10.5 8.5 9.5 2.7 204 chr3R 26301783 intergenic not near genes chr3R 26301885 intergenic not near genes chr3R 26301987 intergenic not near genes chr3R_28_26300001 chr3R_26300001 RAL-843 3151 chr3R 26302068 26302094 chr3R 26302325 26302351 11 256 13.5 9.5 11.5 0.9 283 chr3R 26302068 intergenic not near genes chr3R 26302210 intergenic not near genes chr3R 26302351 intergenic not near genes chr3R_11_26300001 chr3R_26300001 RAL-843 3152 chr3R 26302095 26302139 chr3R 26302321 26302396 27 254 6.0 7.5 6.8 3.5 301 chr3R 26302095 intergenic not near genes chr3R 26302246 intergenic not near genes chr3R 26302396 intergenic not near genes chr3R_27_26300001 chr3R_26300001 RAL-843 3153 chr3R 26370316 26370358 chr3R 26370449 26370491 15 133 0.0 7.5 3.8 3.1 175 chr3R 26370316 intergenic not near genes chr3R 26370404 intergenic not near genes chr3R 26370491 intergenic not near genes chr3R_15_26370001 chr3R_26370001 RAL-843 3154 chr3R 26376283 26376328 chr3R 26385493 26385528 roo 17 9205 13.5 0.0 6.8 2.2 9245 chr3R 26376283 intergenic not near genes chr3R 26380906 intergenic not near genes chr3R 26385528 intergenic not near genes chr3R_17_26380001 chr3R_26380001 RAL-843 3155 chr3R 26376331 26376356 chr3R 26385490 26385580 roo 7 9215 8.5 0.0 4.2 1.3 9249 chr3R 26376331 intergenic not near genes chr3R 26380956 intergenic not near genes chr3R 26385580 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-843 3156 chr3R 26405871 26405940 chr3R 26405997 26406066 18 125 0.0 0.5 0.2 15.0 195 chr3R 26405871 intergenic not near genes chr3R 26405968 intergenic not near genes chr3R 26406066 intergenic not near genes chr3R_18_26405001 chr3R_26405001 RAL-843 3157 chr3R 26510473 26510534 chr3R 26519578 26519639 roo 21 9105 3.5 7.0 5.2 3.4 9166 chr3R 26510473 intron plum - chr3R 26515056 intron plum - chr3R 26519639 intron,5` UTR plum -,CR45226 + chr3R_21_26515001 chr3R_26515001 RAL-843 3158 chr3R 26542001 26542076 chr3R 26542142 26542204 26 136 9.0 6.0 7.5 3.1 203 chr3R 26542001 intron scrib + chr3R 26542102 intron scrib + chr3R 26542204 intron scrib + chr3R_26_26540001 chr3R_26540001 RAL-843 3159 chr3R 26558281 26558353 chr3R 26565644 26565678 Stalker4 16 7355 7.0 5.5 6.2 2.2 7397 chr3R 26558281 intron scrib + chr3R 26561980 intron scrib + chr3R 26565678 intron scrib + chr3R_16_26560001 chr3R_26560001 RAL-843 3160 chr3R 26611302 26611365 chr3R 26611418 26611481 21 123 7.5 8.5 8.0 2.3 179 chr3R 26611302 intergenic not near genes chr3R 26611392 intergenic not near genes chr3R 26611481 intergenic not near genes chr3R_21_26610001 chr3R_26610001 RAL-843 3161 chr3R 26641588 26641664 chr3R 26641725 26641781 32 133 6.5 12.5 9.5 3.0 193 chr3R 26641588 intergenic not near genes chr3R 26641684 intergenic not near genes chr3R 26641781 intergenic not near genes chr3R_32_26640001 chr3R_26640001 RAL-843 3162 chr3R 26642687 26642745 chr3R 26643130 26643188 jockey 25 442 11.5 8.0 9.8 2.3 501 chr3R 26642687 intergenic not near genes chr3R 26642938 intergenic not near genes chr3R 26643188 intergenic not near genes chr3R_25_26640001 chr3R_26640001 RAL-843 3163 chr3R 26688814 26688858 chr3R 26688942 26688986 20 127 12.5 7.0 9.8 1.9 172 chr3R 26688814 intergenic not near genes chr3R 26688900 intergenic not near genes chr3R 26688986 intergenic not near genes chr3R_20_26685001 chr3R_26685001 RAL-843 3164 chr3R 26710779 26710853 chr3R 26710913 26710979 33 134 9.5 11.0 10.2 2.9 200 chr3R 26710779 intron amon - chr3R 26710879 intron amon - chr3R 26710979 intron amon - chr3R_33_26710001 chr3R_26710001 RAL-843 3165 chr3R 26770200 26770264 chr3R 26770322 26770391 29 127 13.5 11.0 12.2 2.2 191 chr3R 26770200 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770391 intergenic not near genes chr3R_29_26770001 chr3R_26770001 RAL-843 3166 chr3R 26778870 26778945 chr3R 26779091 26779153 25 218 6.0 6.5 6.2 3.5 283 chr3R 26778870 intergenic not near genes chr3R 26779012 intergenic not near genes chr3R 26779153 intergenic not near genes chr3R_25_26775001 chr3R_26775001 RAL-843 3167 chr3R 26789584 26789618 chr3R 26789698 26789747 6 126 0.0 5.0 2.5 1.7 163 chr3R 26789584 intergenic not near genes chr3R 26789666 intergenic not near genes chr3R 26789747 intergenic not near genes chr3R_6_26785001 chr3R_26785001 RAL-843 3168 chr3R 26789620 26789625 chr3R 26789694 26789754 5 118 0.0 5.0 2.5 1.4 134 chr3R 26789620 intergenic not near genes chr3R 26789687 intergenic not near genes chr3R 26789754 intergenic not near genes chr3R_5_26785001 chr3R_26785001 RAL-843 3169 chr3R 26810510 26810571 chr3R 26811045 26811106 roo 20 535 8.5 12.0 10.2 1.8 596 chr3R 26810510 intron Tl + chr3R 26810808 intron Tl + chr3R 26811106 intron Tl + chr3R_20_26810001 chr3R_26810001 RAL-843 3170 chr3R 26917247 26917321 chr3R 26917379 26917454 28 131 4.5 8.0 6.2 3.9 207 chr3R 26917247 intron sda + chr3R 26917350 intron sda + chr3R 26917454 intron sda + chr3R_28_26915001 chr3R_26915001 RAL-843 3171 chr3R 26968075 26968122 chr3R 26968208 26968229 13 131 10.0 6.0 8.0 1.4 154 chr3R 26968075 intron CG5521 + chr3R 26968152 intron CG5521 + chr3R 26968229 intron CG5521 + chr3R_13_26965001 chr3R_26965001 RAL-843 3172 chr3R 27007362 27007426 chr3R 27016546 27016611 roo 25 9185 12.0 8.0 10.0 2.3 9249 chr3R 27007362 intron RYa-R + chr3R 27011986 intron RYa-R + chr3R 27016611 intron RYa-R + chr3R_25_27010001 chr3R_27010001 RAL-843 3173 chr3R 27028678 27028750 chr3R 27028807 27028879 28 129 7.0 7.5 7.2 3.4 201 chr3R 27028678 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028879 intron RYa-R + chr3R_28_27025001 chr3R_27025001 RAL-843 3174 chr3R 27030171 27030251 chr3R 27030350 27030423 23 178 8.5 0.0 4.2 4.4 252 chr3R 27030171 intron RYa-R + chr3R 27030297 intron RYa-R + chr3R 27030423 intron RYa-R + chr3R_23_27030001 chr3R_27030001 RAL-843 3175 chr3R 27038562 27038623 chr3R 27038698 27038759 28 136 6.0 4.5 5.2 4.5 197 chr3R 27038562 intron RYa-R + chr3R 27038660 intron RYa-R + chr3R 27038759 intron RYa-R + chr3R_28_27035001 chr3R_27035001 RAL-843 3176 chr3R 27051619 27051687 chr3R 27051760 27051843 10 142 6.5 0.0 3.2 2.4 224 chr3R 27051619 intron RYa-R + chr3R 27051731 intron RYa-R + chr3R 27051843 intron RYa-R + chr3R_10_27050001 chr3R_27050001 RAL-843 3177 chr3R 27071379 27071439 chr3R 27071744 27071805 18 366 6.0 8.5 7.2 2.2 426 chr3R 27071379 intergenic not near genes chr3R 27071592 intergenic not near genes chr3R 27071805 intergenic not near genes chr3R_18_27070001 chr3R_27070001 RAL-843 3178 chr3R 27101500 27101564 chr3R 27101656 27101720 26 156 4.5 9.0 6.8 3.3 220 chr3R 27101500 exon CG17189 + chr3R 27101610 intron CG17189 + chr3R 27101720 exon CG17189 + chr3R_26_27100001 chr3R_27100001 RAL-843 3179 chr3R 27107113 27107185 chr3R 27107387 27107459 26 273 7.5 8.0 7.8 3.0 346 chr3R 27107113 intergenic not near genes chr3R 27107286 intergenic not near genes chr3R 27107459 intergenic not near genes chr3R_26_27105001 chr3R_27105001 RAL-843 3180 chr3R 27140466 27140474 chr3R 27148126 27148131 412 6 7660 19.0 10.5 14.8 0.4 7665 chr3R 27140466 intron CG6051 - chr3R 27144298 intron CG6051 - chr3R 27148131 intron CG6051 - chr3R_6_27140001 chr3R_27140001 RAL-843 3181 chr3R 27140475 27140540 chr3R 27148124 27148200 412 27 7658 10.0 10.0 10.0 2.5 7725 chr3R 27140475 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148200 intron CG6051 - chr3R_27_27140001 chr3R_27140001 RAL-843 3182 chr3R 27152338 27152402 chr3R 27152474 27152532 25 135 12.0 13.5 12.8 1.8 194 chr3R 27152338 intron Men-b + chr3R 27152435 intron Men-b + chr3R 27152532 intron Men-b + chr3R_25_27150001 chr3R_27150001 RAL-843 3183 chr3R 27152403 27152408 chr3R 27152460 27152544 4 116 10.0 10.5 10.2 0.4 141 chr3R 27152403 intron Men-b + chr3R 27152474 intron Men-b + chr3R 27152544 intron Men-b + chr3R_4_27150001 chr3R_27150001 RAL-843 3184 chr3R 27221214 27221259 chr3R 27221354 27221399 12 140 0.0 12.0 6.0 1.7 185 chr3R 27221214 intergenic not near genes chr3R 27221306 intergenic not near genes chr3R 27221399 intergenic not near genes chr3R_12_27220001 chr3R_27220001 RAL-843 3185 chr3R 27225535 27225611 chr3R 27225676 27225752 18 141 5.5 7.0 6.2 2.5 217 chr3R 27225535 intergenic not near genes chr3R 27225644 intergenic not near genes chr3R 27225752 intergenic not near genes chr3R_18_27225001 chr3R_27225001 RAL-843 3186 chr3R 27254242 27254291 chr3R 27254413 27254462 23 166 12.0 13.5 12.8 1.7 220 chr3R 27254242 intron TfIIA-L + chr3R 27254352 intron TfIIA-L + chr3R 27254462 intron TfIIA-L + chr3R_23_27250001 chr3R_27250001 RAL-843 3187 chr3R 27254292 27254308 chr3R 27254407 27254479 10 165 9.0 12.0 10.5 0.9 187 chr3R 27254292 intron TfIIA-L + chr3R 27254386 intron TfIIA-L + chr3R 27254479 intron TfIIA-L + chr3R_10_27250001 chr3R_27250001 RAL-843 3188 chr3R 27293753 27293819 chr3R 27293903 27293969 15 149 6.5 5.5 6.0 2.1 216 chr3R 27293753 intergenic not near genes chr3R 27293861 intergenic CG3339 - chr3R 27293969 intergenic CG3339 - chr3R_15_27290001 chr3R_27290001 RAL-843 3189 chr3R 27317052 27317102 chr3R 27317180 27317231 24 129 14.0 8.5 11.2 2.0 179 chr3R 27317052 intron CG3339 - chr3R 27317142 intron CG3339 - chr3R 27317231 exon CG3339 - chr3R_24_27315001 chr3R_27315001 RAL-843 3190 chr3R 27329427 27329498 chr3R 27329553 27329625 10 126 5.5 2.5 4.0 2.0 198 chr3R 27329427 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329625 intergenic CG3330 - chr3R_10_27325001 chr3R_27325001 RAL-843 3191 chr3R 27335905 27335946 chr3R 27336030 27336069 13 127 8.5 0.5 4.5 2.4 164 chr3R 27335905 intergenic not near genes chr3R 27335987 intergenic not near genes chr3R 27336069 intergenic not near genes chr3R_13_27335001 chr3R_27335001 RAL-843 3192 chr3R 27342751 27342815 chr3R 27351382 27351446 Tirant 23 8629 10.0 11.5 10.8 1.9 8695 chr3R 27342751 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351446 intron CG42534 + chr3R_23_27345001 chr3R_27345001 RAL-843 3193 chr3R 27393704 27393781 chr3R 27393834 27393894 32 130 5.0 6.0 5.5 4.9 190 chr3R 27393704 intron side - chr3R 27393799 intron side - chr3R 27393894 intron side - chr3R_32_27390001 chr3R_27390001 RAL-843 3194 chr3R 27398649 27398654 chr3R 27398777 27398783 5 129 0.0 4.0 2.0 1.7 134 chr3R 27398649 intron side - chr3R 27398716 intron side - chr3R 27398783 intron side - chr3R_5_27395001 chr3R_27395001 RAL-843 3195 chr3R 27404899 27404951 chr3R 27405019 27405070 15 123 9.5 9.0 9.2 1.5 171 chr3R 27404899 intron side - chr3R 27404984 intron side - chr3R 27405070 intron side - chr3R_15_27400001 chr3R_27400001 RAL-843 3196 chr3R 27420110 27420158 chr3R 27420257 27420305 15 147 4.5 9.5 7.0 1.9 195 chr3R 27420110 intron side - chr3R 27420208 intron side - chr3R 27420305 intron side - chr3R_15_27420001 chr3R_27420001 RAL-843 3197 chr3R 27443360 27443419 chr3R 27443487 27443546 22 127 5.5 11.0 8.2 2.4 186 chr3R 27443360 intergenic not near genes chr3R 27443453 intergenic not near genes chr3R 27443546 intergenic not near genes chr3R_22_27440001 chr3R_27440001 RAL-843 3198 chr3R 27470841 27470850 chr3R 27471004 27471013 5 163 12.0 6.5 9.2 0.5 172 chr3R 27470841 intergenic not near genes chr3R 27470927 intergenic not near genes chr3R 27471013 intergenic not near genes chr3R_5_27470001 chr3R_27470001 RAL-843 3199 chr3R 27470853 27470916 chr3R 27471001 27471059 25 160 5.0 5.5 5.2 4.0 206 chr3R 27470853 intergenic not near genes chr3R 27470956 intergenic not near genes chr3R 27471059 intergenic not near genes chr3R_25_27470001 chr3R_27470001 RAL-843 3200 chr3R 27492335 27492406 chr3R 27492472 27492541 16 137 1.0 6.0 3.5 3.6 206 chr3R 27492335 intergenic not near genes chr3R 27492438 intergenic not near genes chr3R 27492541 intergenic not near genes chr3R_16_27490001 chr3R_27490001 RAL-843 3201 chr3R 27496546 27496550 chr3R 27496701 27496705 4 154 24.5 7.5 16.0 0.2 159 chr3R 27496546 intergenic not near genes chr3R 27496626 intergenic not near genes chr3R 27496705 intergenic not near genes chr3R_4_27495001 chr3R_27495001 RAL-843 3202 chr3R 27496552 27496604 chr3R 27496696 27496759 24 154 12.5 7.5 10.0 2.2 207 chr3R 27496552 intergenic not near genes chr3R 27496656 intergenic not near genes chr3R 27496759 intergenic not near genes chr3R_24_27495001 chr3R_27495001 RAL-843 3203 chr3R 27515204 27515231 chr3R 27515313 27515377 15 128 0.0 8.0 4.0 3.0 173 chr3R 27515204 intergenic not near genes chr3R 27515290 intergenic not near genes chr3R 27515377 intergenic not near genes chr3R_15_27515001 chr3R_27515001 RAL-843 3204 chr3R 27521116 27521172 chr3R 27530375 27530431 roo 16 9259 11.0 12.5 11.8 1.2 9315 chr3R 27521116 intron CG12885 + chr3R 27525774 intron CG12885 + chr3R 27530431 intron CG12885 + chr3R_16_27525001 chr3R_27525001 RAL-843 3205 chr3R 27548264 27548341 chr3R 27548441 27548518 29 174 3.5 6.0 4.8 5.0 254 chr3R 27548264 3` UTR Klp98A - chr3R 27548391 3` UTR Klp98A - chr3R 27548518 3` UTR Klp98A - chr3R_29_27545001 chr3R_27545001 RAL-843 3206 chr3R 27595005 27595074 chr3R 27595138 27595207 38 132 1.0 8.0 4.5 6.9 202 chr3R 27595005 intron CG5639 - chr3R 27595106 intron CG5639 - chr3R 27595207 intron CG5639 - chr3R_38_27595001 chr3R_27595001 RAL-843 3207 chr3R 27644214 27644278 chr3R 27644356 27644420 28 141 7.0 8.5 7.8 3.2 206 chr3R 27644214 intron tau - chr3R 27644317 intron tau - chr3R 27644420 intron tau - chr3R_28_27640001 chr3R_27640001 RAL-843 3208 chr3R 27705314 27705390 chr3R 27705438 27705514 40 120 9.0 8.5 8.8 4.1 200 chr3R 27705314 exon CG12428 - chr3R 27705414 intron CG12428 - chr3R 27705514 exon CG12428 - chr3R_40_27705001 chr3R_27705001 RAL-843 3209 chr3R 27718527 27718592 chr3R 27718656 27718721 26 128 9.0 3.0 6.0 3.7 194 chr3R 27718527 intergenic not near genes chr3R 27718624 intergenic not near genes chr3R 27718721 intergenic not near genes chr3R_26_27715001 chr3R_27715001 RAL-843 3210 chr3R 27725491 27725595 chr3R 27731003 27731088 I-element 11 5505 0.0 6.5 3.2 2.6 5597 chr3R 27725491 intergenic not near genes chr3R 27728290 intergenic not near genes chr3R 27731088 intergenic not near genes chr3R_11_27725001 chr3R_27725001 RAL-843 3211 chr3R 27779224 27779234 chr3R 27779354 27779364 7 130 19.5 11.0 15.2 0.4 140 chr3R 27779224 exon CG34353 - chr3R 27779294 exon CG34353 - chr3R 27779364 intron CG34353 - chr3R_7_27775001 chr3R_27775001 RAL-843 3212 chr3R 27779235 27779285 chr3R 27779348 27779405 14 118 13.0 9.0 11.0 1.2 170 chr3R 27779235 exon CG34353 - chr3R 27779320 intron CG34353 - chr3R 27779405 intron CG34353 - chr3R_14_27775001 chr3R_27775001 RAL-843 3213 chr3R 27791611 27791620 chr3R 27794799 27794818 Rt1c 5 3194 19.5 17.0 18.2 0.3 3207 chr3R 27791611 intron CG34353 - chr3R 27793214 intron CG34353 - chr3R 27794818 intron CG34353 - chr3R_5_27790001 chr3R_27790001 RAL-843 3214 chr3R 27791621 27791643 chr3R 27794793 27794815 Rt1c 10 3186 14.5 17.5 16.0 0.6 3194 chr3R 27791621 intron CG34353 - chr3R 27793218 intron CG34353 - chr3R 27794815 intron CG34353 - chr3R_10_27790001 chr3R_27790001 RAL-843 3215 chr3R 27799893 27799960 chr3R 27800025 27800092 25 131 8.0 9.5 8.8 2.6 199 chr3R 27799893 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800092 intron CG34353 - chr3R_25_27795001 chr3R_27795001 RAL-843 3216 chr3R 27829860 27829872 chr3R 27829989 27829989 6 126 23.0 10.5 16.8 0.3 129 chr3R 27829860 intron CG34353 - chr3R 27829924 intron CG34353 - chr3R 27829989 intron CG34353 - chr3R_6_27825001 chr3R_27825001 RAL-843 3217 chr3R 27829877 27829929 chr3R 27829986 27830058 7 120 8.5 10.5 9.5 0.7 181 chr3R 27829877 intron CG34353 - chr3R 27829968 intron CG34353 - chr3R 27830058 intron CG34353 - chr3R_7_27825001 chr3R_27825001 RAL-843 3218 chr3R 27840188 27840269 chr3R 27840373 27840452 14 182 0.0 0.0 0.0 14.0 264 chr3R 27840188 intron CG34353 - chr3R 27840320 intron CG34353 - chr3R 27840452 intron CG34353 - chr3R_14_27840001 chr3R_27840001 RAL-843 3219 chr3R 27856716 27856791 chr3R 27858249 27858299 hopper2 22 1531 4.0 10.0 7.0 2.8 1583 chr3R 27856716 intron CG34353 - chr3R 27857508 intron CG34353 - chr3R 27858299 intron CG34353 - chr3R_22_27855001 chr3R_27855001 RAL-843 3220 chr3R 27862918 27862979 chr3R 27868267 27868325 Transpac 22 5353 11.5 10.0 10.8 1.9 5407 chr3R 27862918 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868325 intron CG34353 - chr3R_22_27865001 chr3R_27865001 RAL-843 3221 chr3R 27875659 27875699 chr3R 27882764 27882804 297 14 7105 18.5 6.5 12.5 1.0 7145 chr3R 27875659 intron CG34353 - chr3R 27879232 intron CG34353 - chr3R 27882804 intron CG34353 - chr3R_14_27875001 chr3R_27875001 RAL-843 3222 chr3R 27875700 27875725 chr3R 27882753 27882784 297 12 7096 12.5 4.0 8.2 1.3 7084 chr3R 27875700 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882784 intron CG34353 - chr3R_12_27875001 chr3R_27875001 RAL-843 3223 chr3R 28012928 28012974 chr3R 28013182 28013220 12 261 5.0 6.0 5.5 1.8 292 chr3R 28012928 intergenic not near genes chr3R 28013074 intergenic not near genes chr3R 28013220 intergenic not near genes chr3R_12_28010001 chr3R_28010001 RAL-843 3224 chr3R 28035444 28035503 chr3R 28035570 28035628 17 121 3.5 9.0 6.2 2.4 184 chr3R 28035444 intron CG34362 + chr3R 28035536 intron CG34362 + chr3R 28035628 intron CG34362 + chr3R_17_28035001 chr3R_28035001 RAL-843 3225 chr3R 28054397 28054472 chr3R 28054523 28054598 33 121 7.5 8.0 7.8 3.7 201 chr3R 28054397 intron CG34362 + chr3R 28054498 intron CG34362 + chr3R 28054598 intron CG34362 + chr3R_33_28050001 chr3R_28050001 RAL-843 3226 chr3R 28068475 28068504 chr3R 28073967 28073996 I-element 11 5491 0.0 12.0 6.0 1.6 5521 chr3R 28068475 intron CG34362 + chr3R 28071236 intron CG34362 + chr3R 28073996 intron CG34362 + chr3R_11_28070001 chr3R_28070001 RAL-843 3227 chr3R 28068508 28068513 chr3R 28073946 28074005 I-element 5 5481 0.0 11.0 5.5 0.8 5497 chr3R 28068508 intron CG34362 + chr3R 28071256 intron CG34362 + chr3R 28074005 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-843 3228 chr3R 28085574 28085595 chr3R 28085705 28085726 6 131 3.0 1.0 2.0 2.0 152 chr3R 28085574 3` UTR CG34362 + chr3R 28085650 3` UTR CG34362 + chr3R 28085726 3` UTR CG34362 + chr3R_6_28085001 chr3R_28085001 RAL-843 3229 chr3R 28097642 28097670 chr3R 28097799 28097827 13 156 9.5 6.5 8.0 1.4 185 chr3R 28097642 intergenic not near genes chr3R 28097734 intergenic not near genes chr3R 28097827 intergenic not near genes chr3R_13_28095001 chr3R_28095001 RAL-843 3230 chr3R 28103283 28103355 chr3R 28103426 28103477 15 139 3.5 8.0 5.8 2.2 194 chr3R 28103283 intergenic not near genes chr3R 28103380 intergenic not near genes chr3R 28103477 intergenic not near genes chr3R_15_28100001 chr3R_28100001 RAL-843 3231 chr3R 28152306 28152359 chr3R 28152430 28152485 17 124 18.0 13.5 15.8 1.0 179 chr3R 28152306 intron CG34354 + chr3R 28152396 intron CG34354 + chr3R 28152485 intron CG34354 + chr3R_17_28150001 chr3R_28150001 RAL-843 3232 chr3R 28164842 28164907 chr3R 28164970 28165035 15 128 7.0 0.0 3.5 3.3 193 chr3R 28164842 intron CG34354 + chr3R 28164938 intron CG34354 + chr3R 28165035 intron CG34354 + chr3R_15_28160001 chr3R_28160001 RAL-843 3233 chr3R 28172966 28172992 chr3R 28173145 28173200 5 201 3.0 5.0 4.0 1.0 234 chr3R 28172966 intron CG34354 + chr3R 28173083 intron CG34354 + chr3R 28173200 intron CG34354 + chr3R_5_28170001 chr3R_28170001 RAL-843 3234 chr3R 28173620 28173701 chr3R 28181100 28181181 mdg1 16 7480 5.0 5.5 5.2 2.6 7561 chr3R 28173620 intron CG34354 + chr3R 28177400 intron CG34354 + chr3R 28181181 intron CG34354 + chr3R_16_28175001 chr3R_28175001 RAL-843 3235 chr3R 28196667 28196715 chr3R 28196831 28196890 22 172 12.0 10.5 11.2 1.8 223 chr3R 28196667 intron CG34354 + chr3R 28196778 intron CG34354 + chr3R 28196890 intron CG34354 + chr3R_22_28195001 chr3R_28195001 RAL-843 3236 chr3R 28223214 28223288 chr3R 28223350 28223421 19 134 6.0 6.5 6.2 2.6 207 chr3R 28223214 intron CG34354 + chr3R 28223318 intron CG34354 + chr3R 28223421 intron CG34354 + chr3R_19_28220001 chr3R_28220001 RAL-843 3237 chr3R 28234466 28234538 chr3R 28234600 28234672 15 128 5.5 4.5 5.0 2.5 206 chr3R 28234466 intron CG34354 + chr3R 28234569 intron CG34354 + chr3R 28234672 intron CG34354 + chr3R_15_28230001 chr3R_28230001 RAL-843 3238 chr3R 28253329 28253346 chr3R 28255859 28255906 jockey 6 2544 11.5 11.0 11.2 0.5 2577 chr3R 28253329 intergenic not near genes chr3R 28254618 intergenic not near genes chr3R 28255906 intergenic not near genes chr3R_6_28250001 chr3R_28250001 RAL-843 3239 chr3R 28253347 28253361 chr3R 28255850 28255914 jockey 8 2551 7.5 8.0 7.8 0.9 2567 chr3R 28253347 intergenic not near genes chr3R 28254630 intergenic not near genes chr3R 28255914 intergenic not near genes chr3R_8_28250001 chr3R_28250001 RAL-843 3240 chr3R 28302070 28302121 chr3R 28302559 28302610 jockey 20 489 8.5 11.0 9.8 1.9 540 chr3R 28302070 intergenic not near genes chr3R 28302340 intergenic not near genes chr3R 28302610 intergenic not near genes chr3R_20_28300001 chr3R_28300001 RAL-843 3241 chr3R 28345607 28345673 chr3R 28345733 28345798 17 126 5.5 10.0 7.8 1.9 191 chr3R 28345607 intergenic Moca-cyp + chr3R 28345702 intergenic not near genes chr3R 28345798 intergenic not near genes chr3R_17_28345001 chr3R_28345001 RAL-843 3242 chr3R 28380755 28380789 chr3R 28381037 28381048 10 274 18.0 8.5 13.2 0.7 293 chr3R 28380755 intergenic not near genes chr3R 28380902 intergenic not near genes chr3R 28381048 intergenic not near genes chr3R_10_28380001 chr3R_28380001 RAL-843 3243 chr3R 28380791 28380825 chr3R 28381033 28381073 15 264 3.5 7.5 5.5 2.3 282 chr3R 28380791 intergenic not near genes chr3R 28380932 intergenic not near genes chr3R 28381073 intergenic not near genes chr3R_15_28380001 chr3R_28380001 RAL-843 3244 chr3R 28393657 28393722 chr3R 28393807 28393872 32 150 8.0 12.0 10.0 2.9 215 chr3R 28393657 intergenic not near genes chr3R 28393764 intergenic not near genes chr3R 28393872 intergenic not near genes chr3R_32_28390001 chr3R_28390001 RAL-843 3245 chr3R 28407669 28407722 chr3R 28407802 28407858 18 134 8.0 9.0 8.5 1.9 189 chr3R 28407669 intergenic not near genes chr3R 28407764 intergenic not near genes chr3R 28407858 intergenic not near genes chr3R_18_28405001 chr3R_28405001 RAL-843 3246 chr3R 28478378 28478444 chr3R 28478504 28478575 20 125 7.0 13.0 10.0 1.8 197 chr3R 28478378 intergenic not near genes chr3R 28478476 intergenic not near genes chr3R 28478575 intergenic not near genes chr3R_20_28475001 chr3R_28475001 RAL-843 3247 chr3R 28479098 28479168 chr3R 28479231 28479301 28 132 8.0 4.5 6.2 3.9 203 chr3R 28479098 intergenic not near genes chr3R 28479200 intergenic not near genes chr3R 28479301 intergenic not near genes chr3R_28_28475001 chr3R_28475001 RAL-843 3248 chr3R 28480292 28480329 chr3R 28480423 28480460 10 131 8.5 8.5 8.5 1.1 168 chr3R 28480292 intergenic not near genes chr3R 28480376 intergenic not near genes chr3R 28480460 intergenic not near genes chr3R_10_28480001 chr3R_28480001 RAL-843 3249 chr3R 28484353 28484414 chr3R 28486220 28486281 105 1869 123.0 167.5 145.2 0.7 1928 chr3R 28484353 intergenic CG1894 + chr3R 28485317 exon CG1894 + chr3R 28486281 intergenic CG1894 + chr3R_105_28485001 chr3R_28485001 RAL-843 3250 chr3R 28484415 28484419 chr3R 28486282 28486286 6 1867 127.5 100.5 114.0 0.1 1871 chr3R 28484415 intergenic CG1894 + chr3R 28485350 exon CG1894 + chr3R 28486286 intergenic CG1894 + chr3R_6_28485001 chr3R_28485001 RAL-843 3251 chr3R 28484388 28484418 chr3R 28486287 28486292 8 1872 127.0 99.5 113.2 0.1 1904 chr3R 28484388 intergenic CG1894 + chr3R 28485340 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_8_28485001 chr3R_28485001 RAL-843 3252 chr3R 28599333 28599401 chr3R 28599530 28599598 26 196 7.0 6.0 6.5 3.5 265 chr3R 28599333 intergenic Noa36 - chr3R 28599466 intergenic Noa36 - chr3R 28599598 intergenic Noa36 - chr3R_26_28595001 chr3R_28595001 RAL-843 3253 chr3R 28633147 28633223 chr3R 28633277 28633330 41 127 12.5 10.0 11.2 3.4 183 chr3R 28633147 intron CG10011 - chr3R 28633238 intron CG10011 - chr3R 28633330 intron CG10011 - chr3R_41_28630001 chr3R_28630001 RAL-843 3254 chr3R 28688148 28688181 chr3R 28688351 28688379 11 202 101.5 90.5 96.0 0.1 231 chr3R 28688148 intron CG9990 + chr3R 28688264 intron CG9990 + chr3R 28688379 intron CG9990 + chr3R_11_28685001 chr3R_28685001 RAL-843 3255 chr3R 28688182 28688218 chr3R 28688345 28688421 18 196 88.5 85.5 87.0 0.2 239 chr3R 28688182 intron CG9990 + chr3R 28688302 intron CG9990 + chr3R 28688421 intron CG9990 + chr3R_18_28685001 chr3R_28685001 RAL-843 3256 chr3R 28702881 28702960 chr3R 28703015 28703094 38 132 4.5 9.5 7.0 4.8 213 chr3R 28702881 intron htt + chr3R 28702988 intron htt + chr3R 28703094 intron htt + chr3R_38_28700001 chr3R_28700001 RAL-843 3257 chr3R 28739428 28739505 chr3R 28739568 28739645 26 137 6.5 7.5 7.0 3.2 217 chr3R 28739428 intron AstA-R2 - chr3R 28739536 intron AstA-R2 - chr3R 28739645 intron AstA-R2 - chr3R_26_28735001 chr3R_28735001 RAL-843 3258 chr3R 28742437 28742511 chr3R 28742563 28742606 25 124 12.0 10.5 11.2 2.0 169 chr3R 28742437 intron AstA-R2 - chr3R 28742522 intron AstA-R2 - chr3R 28742606 intron AstA-R2 - chr3R_25_28740001 chr3R_28740001 RAL-843 3259 chr3R 28758245 28758253 chr3R 28763907 28763920 roo 4 5666 19.5 0.0 9.8 0.4 5675 chr3R 28758245 intergenic aqrs - chr3R 28761082 intergenic not near genes chr3R 28763920 intergenic not near genes chr3R_4_28760001 chr3R_28760001 RAL-843 3260 chr3R 28758274 28758319 chr3R 28771331 28771376 Stalker4 18 13057 6.0 9.0 7.5 2.1 13102 chr3R 28758274 intergenic aqrs - chr3R 28764825 intergenic not near genes chr3R 28771376 intergenic not near genes chr3R_18_28760001 chr3R_28760001 RAL-843 3261 chr3R 28763909 28763921 chr3R 28771402 28771414 Stalker4 4 7493 0.0 21.0 10.5 0.3 7505 chr3R 28763909 intergenic not near genes chr3R 28767662 intergenic not near genes chr3R 28771414 intergenic not near genes chr3R_4_28765001 chr3R_28765001 RAL-843 3262 chr3R 28792853 28792893 chr3R 28797970 28798038 jockey 11 5128 10.0 6.0 8.0 1.2 5185 chr3R 28792853 intergenic not near genes chr3R 28795446 intergenic not near genes chr3R 28798038 intergenic not near genes chr3R_11_28795001 chr3R_28795001 RAL-843 3263 chr3R 28802001 28802067 chr3R 28802126 28802197 31 129 6.0 8.0 7.0 3.9 196 chr3R 28802001 intergenic not near genes chr3R 28802099 intergenic not near genes chr3R 28802197 intergenic not near genes chr3R_31_28800001 chr3R_28800001 RAL-843 3264 chr3R 21907534 21907536 chr3R 28831799 28831802 53 6924266 36.5 31.0 33.8 1.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_53_25365001 chr3R_25365001 RAL-843 3265 chr3R 28989870 28989924 chr3R 28990084 28990149 25 220 10.5 5.5 8.0 2.8 279 chr3R 28989870 intergenic not near genes chr3R 28990010 intergenic not near genes chr3R 28990149 intergenic not near genes chr3R_25_28990001 chr3R_28990001 RAL-843 3266 chr3R 28989925 28989933 chr3R 28990083 28990158 5 211 8.0 5.5 6.8 0.6 233 chr3R 28989925 intergenic not near genes chr3R 28990042 intergenic not near genes chr3R 28990158 intergenic not near genes chr3R_5_28990001 chr3R_28990001 RAL-843 3267 chr3R 28998948 28999021 chr3R 28999083 28999158 22 140 5.5 2.0 3.8 4.6 210 chr3R 28998948 intron wat - chr3R 28999053 intron wat - chr3R 28999158 intron wat - chr3R_22_28995001 chr3R_28995001 RAL-843 3268 chr3R 29006853 29006873 chr3R 29006970 29006998 10 124 12.0 17.0 14.5 0.6 145 chr3R 29006853 intron wat - chr3R 29006926 intron wat - chr3R 29006998 intron wat - chr3R_10_29005001 chr3R_29005001 RAL-843 3269 chr3R 29079342 29079394 chr3R 29080764 29080816 NOF 25 1422 12.0 12.5 12.2 1.9 1474 chr3R 29079342 intron CG11873 + chr3R 29080079 intron CG11873 + chr3R 29080816 intron CG11873 + chr3R_25_29080001 chr3R_29080001 RAL-843 3270 chr3R 29091383 29091438 chr3R 29091520 29091530 20 128 12.5 19.0 15.8 1.2 147 chr3R 29091383 intron CG11873 + chr3R 29091456 intron CG11873 + chr3R 29091530 intron CG11873 + chr3R_20_29090001 chr3R_29090001 RAL-843 3271 chr3R 29186977 29187045 chr3R 29187140 29187208 32 162 14.5 7.5 11.0 2.7 231 chr3R 29186977 intron CG14509 - chr3R 29187092 intron CG14509 - chr3R 29187208 intron CG14509 - chr3R_32_29185001 chr3R_29185001 RAL-843 3272 chr3R 29203798 29203821 chr3R 29203928 29203951 16 130 18.0 0.0 9.0 1.6 153 chr3R 29203798 5` UTR CG14508 - chr3R 29203874 intron CG14508 - chr3R 29203951 intron CG14508 - chr3R_16_29200001 chr3R_29200001 RAL-843 3273 chr3R 29213015 29213089 chr3R 29213148 29213221 35 131 7.0 6.0 6.5 4.7 206 chr3R 29213015 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213221 intergenic not near genes chr3R_35_29210001 chr3R_29210001 RAL-843 3274 chr3R 29237240 29237276 chr3R 29239266 29239341 20 2058 46.0 5.5 25.8 0.7 2101 chr3R 29237240 exon CG11951 - chr3R 29238290 intron CG11951 - chr3R 29239341 exon CG31427 - chr3R_20_29235001 chr3R_29235001 RAL-843 3275 chr3R 29238731 29238789 chr3R 29238895 29238953 20 164 5.5 11.0 8.2 2.2 222 chr3R 29238731 intergenic CG11951 -,CG31427 - chr3R 29238842 3` UTR CG31427 - chr3R 29238953 3` UTR CG31427 - chr3R_20_29235001 chr3R_29235001 RAL-843 3276 chr3R 29239218 29239244 chr3R 29245520 29245560 16 6320 5.5 46.0 25.8 0.6 6342 chr3R 29239218 exon CG31427 - chr3R 29242389 exon CG31445 - chr3R 29245560 exon SP1029 - chr3R_16_29240001 chr3R_29240001 RAL-843 3277 chr3R 29249871 29249907 chr3R 29250010 29250046 5 139 0.0 2.0 1.0 2.5 175 chr3R 29249871 intron SP1029 - chr3R 29249958 intron SP1029 - chr3R 29250046 intron SP1029 - chr3R_5_29245001 chr3R_29245001 RAL-843 3278 chr3R 29282762 29282785 chr3R 29282898 29282921 7 136 17.5 20.5 19.0 0.3 159 chr3R 29282762 intergenic not near genes chr3R 29282842 intergenic not near genes chr3R 29282921 intergenic not near genes chr3R_7_29280001 chr3R_29280001 RAL-843 3279 chr3R 29282790 29282816 chr3R 29282895 29282952 9 121 11.0 19.0 15.0 0.6 162 chr3R 29282790 intergenic not near genes chr3R 29282871 intergenic not near genes chr3R 29282952 intergenic not near genes chr3R_9_29280001 chr3R_29280001 RAL-843 3280 chr3R 29319772 29319832 chr3R 29320141 29320201 jockey 11 369 6.5 7.0 6.8 1.4 429 chr3R 29319772 intergenic Cnx99A - chr3R 29319986 intergenic Cnx99A - chr3R 29320201 intergenic not near genes chr3R_11_29315001 chr3R_29315001 RAL-843 3281 chr3R 29319839 29319849 chr3R 29320208 29320217 jockey 8 369 3.5 18.0 10.8 0.7 378 chr3R 29319839 intergenic Cnx99A - chr3R 29320028 intergenic Cnx99A - chr3R 29320217 intergenic not near genes chr3R_8_29320001 chr3R_29320001 RAL-843 3282 chr3R 29332297 29332369 chr3R 29332436 29332506 14 135 2.5 8.5 5.5 2.2 209 chr3R 29332297 intergenic not near genes chr3R 29332402 intergenic not near genes chr3R 29332506 intergenic not near genes chr3R_14_29330001 chr3R_29330001 RAL-843 3283 chr3R 29406580 29406631 chr3R 29407916 29407967 jockey 20 1330 12.0 14.0 13.0 1.4 1387 chr3R 29406580 intron Ptp99A + chr3R 29407274 intron Ptp99A + chr3R 29407967 intron Ptp99A + chr3R_20_29405001 chr3R_29405001 RAL-843 3284 chr3R 29406633 29406645 chr3R 29407915 29407976 jockey 6 1312 8.0 14.0 11.0 0.5 1343 chr3R 29406633 intron Ptp99A + chr3R 29407304 intron Ptp99A + chr3R 29407976 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-843 3285 chr3R 29447792 29447847 chr3R 29447937 29447999 23 148 4.0 10.5 7.2 2.8 207 chr3R 29447792 intron Ptp99A + chr3R 29447896 intron Ptp99A + chr3R 29447999 intron Ptp99A + chr3R_23_29445001 chr3R_29445001 RAL-843 3286 chr3R 29449322 29449381 chr3R 29449450 29449509 21 128 11.0 9.0 10.0 1.9 187 chr3R 29449322 intron Ptp99A + chr3R 29449416 intron Ptp99A + chr3R 29449509 intron Ptp99A + chr3R_21_29445001 chr3R_29445001 RAL-843 3287 chr3R 29471972 29471993 chr3R 29472115 29472131 6 140 10.5 10.0 10.2 0.5 159 chr3R 29471972 intron Ptp99A + chr3R 29472052 intron Ptp99A + chr3R 29472131 intron Ptp99A + chr3R_6_29470001 chr3R_29470001 RAL-843 3288 chr3R 29471996 29472034 chr3R 29472104 29472154 18 132 4.5 6.5 5.5 2.8 158 chr3R 29471996 intron Ptp99A + chr3R 29472075 intron Ptp99A + chr3R 29472154 intron Ptp99A + chr3R_18_29470001 chr3R_29470001 RAL-843 3289 chr3R 29474383 29474425 chr3R 29474519 29474562 13 136 13.0 7.5 10.2 1.2 179 chr3R 29474383 intron Ptp99A + chr3R 29474472 intron Ptp99A + chr3R 29474562 intron Ptp99A + chr3R_13_29470001 chr3R_29470001 RAL-843 3290 chr3R 29505853 29505865 chr3R 29505974 29505987 6 122 7.5 9.5 8.5 0.6 134 chr3R 29505853 intergenic not near genes chr3R 29505920 intergenic not near genes chr3R 29505987 intergenic not near genes chr3R_6_29505001 chr3R_29505001 RAL-843 3291 chr3R 29505872 29505924 chr3R 29505972 29506051 16 125 4.0 9.5 6.8 2.1 179 chr3R 29505872 intergenic not near genes chr3R 29505962 intergenic not near genes chr3R 29506051 intergenic not near genes chr3R_16_29505001 chr3R_29505001 RAL-843 3292 chr3R 29512985 29513018 chr3R 29513106 29513142 10 125 15.0 12.0 13.5 0.7 157 chr3R 29512985 intergenic not near genes chr3R 29513064 intergenic not near genes chr3R 29513142 intergenic not near genes chr3R_10_29510001 chr3R_29510001 RAL-843 3293 chr3R 29513019 29513045 chr3R 29513105 29513171 12 123 12.5 12.5 12.5 0.9 152 chr3R 29513019 intergenic not near genes chr3R 29513095 intergenic not near genes chr3R 29513171 intergenic not near genes chr3R_12_29510001 chr3R_29510001 RAL-843 3294 chr3R 29565724 29565761 chr3R 29565852 29565889 12 128 8.5 4.0 6.2 1.7 165 chr3R 29565724 intergenic Dr + chr3R 29565806 intergenic not near genes chr3R 29565889 intergenic not near genes chr3R_12_29565001 chr3R_29565001 RAL-843 3295 chr3R 29606897 29606968 chr3R 29607018 29607096 30 126 13.5 7.5 10.5 2.6 199 chr3R 29606897 intron alph + chr3R 29606996 intron alph + chr3R 29607096 intron alph + chr3R_30_29605001 chr3R_29605001 RAL-843 3296 chr3R 29621231 29621263 chr3R 29621355 29621390 11 127 13.5 6.0 9.8 1.0 159 chr3R 29621231 intergenic CG1907 + chr3R 29621310 intergenic not near genes chr3R 29621390 intergenic not near genes chr3R_11_29620001 chr3R_29620001 RAL-843 3297 chr3R 29627240 29627315 chr3R 29627702 29627777 24 456 6.0 5.5 5.8 3.5 537 chr3R 29627240 intergenic not near genes chr3R 29627508 intergenic not near genes chr3R 29627777 intergenic not near genes chr3R_24_29625001 chr3R_29625001 RAL-843 3298 chr3R 29642463 29642532 chr3R 29642590 29642659 21 127 5.5 5.0 5.2 3.4 196 chr3R 29642463 intron Dop1R2 - chr3R 29642561 intron Dop1R2 - chr3R 29642659 intron Dop1R2 - chr3R_21_29640001 chr3R_29640001 RAL-843 3299 chr3R 29702108 29702157 chr3R 29702234 29702290 12 131 8.5 0.0 4.2 2.3 182 chr3R 29702108 intergenic not near genes chr3R 29702199 intergenic not near genes chr3R 29702290 intergenic not near genes chr3R_12_29700001 chr3R_29700001 RAL-843 3300 chr3R 29738218 29738293 chr3R 29739735 29739787 hobo 36 1516 14.0 10.0 12.0 2.8 1569 chr3R 29738218 intergenic CG1969 +,CG7598 + chr3R 29739002 intron CG1969 + chr3R 29739787 5` UTR CG1969 + chr3R_36_29735001 chr3R_29735001 RAL-843 3301 chr3R 29754921 29754990 chr3R 29755049 29755117 18 127 3.5 10.0 6.8 2.3 196 chr3R 29754921 intergenic CR44953 -,yata + chr3R 29755019 intergenic CR44953 -,yata + chr3R 29755117 intergenic CR44953 - chr3R_18_29755001 chr3R_29755001 RAL-843 3302 chr3R 29758896 29758967 chr3R 29759022 29759091 34 124 12.0 5.5 8.8 3.5 195 chr3R 29758896 3` UTR CR44953 - chr3R 29758994 3` UTR CR44953 - chr3R 29759091 intergenic CR44953 - chr3R_34_29755001 chr3R_29755001 RAL-843 3303 chr3R 29760323 29760383 chr3R 29761574 29761634 pogo 25 1251 8.5 0.0 4.2 4.8 1311 chr3R 29760323 intergenic not near genes chr3R 29760978 intergenic not near genes chr3R 29761634 intergenic not near genes chr3R_25_29760001 chr3R_29760001 RAL-843 3304 chr3R 29773826 29773897 chr3R 29773967 29774038 11 139 7.5 0.0 3.8 2.3 212 chr3R 29773826 intron kay + chr3R 29773932 intron kay + chr3R 29774038 intron kay + chr3R_11_29770001 chr3R_29770001 RAL-843 3305 chr3R 29790172 29790202 chr3R 29790311 29790313 9 135 16.0 16.0 16.0 0.5 141 chr3R 29790172 intron kay + chr3R 29790242 intron kay + chr3R 29790313 intron kay + chr3R_9_29790001 chr3R_29790001 RAL-843 3306 chr3R 29831766 29831777 chr3R 29831901 29831901 5 133 20.5 9.0 14.8 0.3 135 chr3R 29831766 exon Atg16 - chr3R 29831834 intron Atg16 - chr3R 29831901 intron Atg16 - chr3R_5_29830001 chr3R_29830001 RAL-843 3307 chr3R 29831778 29831837 chr3R 29831897 29831962 17 129 9.0 7.0 8.0 1.9 184 chr3R 29831778 exon Atg16 - chr3R 29831870 intron Atg16 - chr3R 29831962 exon Atg16 - chr3R_17_29830001 chr3R_29830001 RAL-843 3308 chr3R 29854785 29854848 chr3R 29854915 29854978 25 128 9.5 10.5 10.0 2.3 193 chr3R 29854785 3` UTR dgt1 - chr3R 29854882 exon dgt1 - chr3R 29854978 exon dgt1 - chr3R_25_29850001 chr3R_29850001 RAL-843 3309 chr3R 29881976 29882045 chr3R 29891183 29891252 roo 35 9206 10.5 14.0 12.2 2.7 9276 chr3R 29881976 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891252 intron CG31038 + chr3R_35_29885001 chr3R_29885001 RAL-843 3310 chr3R 30025300 30025309 chr3R 30025426 30025435 5 126 3.5 13.5 8.5 0.5 135 chr3R 30025300 intron Axn + chr3R 30025368 intron Axn + chr3R 30025435 intron Axn + chr3R_5_30025001 chr3R_30025001 RAL-843 3311 chr3R 30030383 30030412 chr3R 30030518 30030538 6 132 17.5 6.5 12.0 0.5 155 chr3R 30030383 intron Axn + chr3R 30030460 intron Axn + chr3R 30030538 intron Axn + chr3R_6_30030001 chr3R_30030001 RAL-843 3312 chr3R 30030421 30030461 chr3R 30030513 30030596 25 121 9.5 4.5 7.0 3.1 175 chr3R 30030421 intron Axn + chr3R 30030508 intron Axn + chr3R 30030596 intron Axn + chr3R_25_30030001 chr3R_30030001 RAL-843 3313 chr3R 30032119 30032128 chr3R 30032247 30032257 4 129 20.5 10.5 15.5 0.2 138 chr3R 30032119 intron Axn + chr3R 30032188 intron Axn + chr3R 30032257 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-843 3314 chr3R 30077879 30077930 chr3R 30077997 30078067 23 135 8.0 5.5 6.8 2.9 188 chr3R 30077879 intron sima + chr3R 30077973 intron sima + chr3R 30078067 intron sima + chr3R_23_30075001 chr3R_30075001 RAL-843 3315 chr3R 30084809 30084814 chr3R 30086326 30086330 hobo 7 1517 24.0 10.0 17.0 0.4 1521 chr3R 30084809 intron sima + chr3R 30085570 intron sima + chr3R 30086330 intron sima + chr3R_7_30085001 chr3R_30085001 RAL-843 3316 chr3R 30084818 30084872 chr3R 30086325 30086373 hobo 29 1513 13.0 10.0 11.5 2.3 1555 chr3R 30084818 intron sima + chr3R 30085596 intron sima + chr3R 30086373 intron sima + chr3R_29_30085001 chr3R_30085001 RAL-843 3317 chr3R 30088566 30088641 chr3R 30088702 30088778 27 136 5.5 4.5 5.0 4.5 212 chr3R 30088566 intron sima + chr3R 30088672 intron sima + chr3R 30088778 intron sima + chr3R_27_30085001 chr3R_30085001 RAL-843 3318 chr3R 30147498 30147522 chr3R 30147630 30147651 7 130 16.5 9.5 13.0 0.5 153 chr3R 30147498 intron AdoR - chr3R 30147574 intron AdoR - chr3R 30147651 intron AdoR - chr3R_7_30145001 chr3R_30145001 RAL-843 3319 chr3R 30147527 30147532 chr3R 30147624 30147651 4 120 15.0 8.0 11.5 0.3 124 chr3R 30147527 intron AdoR - chr3R 30147589 intron AdoR - chr3R 30147651 intron AdoR - chr3R_4_30145001 chr3R_30145001 RAL-843 3320 chr3R 30147535 30147568 chr3R 30147620 30147683 18 122 8.5 10.0 9.2 1.8 148 chr3R 30147535 intron AdoR - chr3R 30147609 intron AdoR - chr3R 30147683 intron AdoR - chr3R_18_30145001 chr3R_30145001 RAL-843 3321 chr3R 30162207 30162266 chr3R 30166838 30166900 36 4633 64.5 50.5 57.5 0.6 4693 chr3R 30162207 intergenic not near genes chr3R 30164554 intergenic CG31030 - chr3R 30166900 exon CG31028 - chr3R_36_30160001 chr3R_30160001 RAL-843 3322 chr3R 30177693 30177719 chr3R 30177860 30177886 14 164 20.0 11.5 15.8 0.8 193 chr3R 30177693 5` UTR CG1983 - chr3R 30177790 intergenic CG15530 +,CG1983 - chr3R 30177886 5` UTR CG15530 + chr3R_14_30175001 chr3R_30175001 RAL-843 3323 chr3R 30177721 30177768 chr3R 30177859 30177906 12 160 8.5 11.5 10.0 1.1 185 chr3R 30177721 intergenic CG1983 -,CG15530 + chr3R 30177814 intergenic CG15530 +,CG1983 - chr3R 30177906 5` UTR CG15530 + chr3R_12_30175001 chr3R_30175001 RAL-843 3324 chr3R 30183173 30183234 chr3R 30183332 30183393 20 158 8.5 7.0 7.8 2.3 220 chr3R 30183173 intergenic not near genes chr3R 30183283 intergenic not near genes chr3R 30183393 intergenic CR44262 - chr3R_20_30180001 chr3R_30180001 RAL-843 3325 chr3R 30201832 30201870 chr3R 30201962 30202000 23 130 13.5 1.5 7.5 2.7 168 chr3R 30201832 intron CG9743 - chr3R 30201916 intron CG9743 - chr3R 30202000 intron CG9743 - chr3R_23_30200001 chr3R_30200001 RAL-843 3326 chr3R 30201894 30201900 chr3R 30202023 30202028 4 129 8.5 6.0 7.2 0.5 134 chr3R 30201894 intron CG9743 - chr3R 30201961 intron CG9743 - chr3R 30202028 intron CG9743 - chr3R_4_30200001 chr3R_30200001 RAL-843 3327 chr3R 30203341 30203377 chr3R 30203470 30203506 17 125 8.5 9.0 8.8 1.7 165 chr3R 30203341 intergenic CG9743 - chr3R 30203424 intergenic CG9743 - chr3R 30203506 intergenic not near genes chr3R_17_30200001 chr3R_30200001 RAL-843 3328 chr3R 30210518 30210673 chr3R 30210664 30210803 6 144 1.0 0.0 0.5 4.0 285 chr3R 30210518 intergenic Anp +,CecA1 + chr3R 30210660 intergenic CecA1 +,Anp + chr3R 30210803 intergenic CecA1 +,Anp + chr3R_6_30210001 chr3R_30210001 RAL-843 3329 chr3R 30224601 30224672 chr3R 30224729 30224800 31 127 7.0 2.0 4.5 5.6 199 chr3R 30224601 intergenic not near genes chr3R 30224700 intergenic not near genes chr3R 30224800 intergenic not near genes chr3R_31_30220001 chr3R_30220001 RAL-843 3330 chr3R 30238715 30238793 chr3R 30239937 30240024 1360 6 1224 0.0 0.0 0.0 6.0 1309 chr3R 30238715 intergenic not near genes chr3R 30239370 intergenic not near genes chr3R 30240024 intergenic not near genes chr3R_6_30235001 chr3R_30235001 RAL-843 3331 chr3R 30260328 30260387 chr3R 30260454 30260513 18 126 13.5 11.5 12.5 1.3 185 chr3R 30260328 intergenic not near genes chr3R 30260420 intergenic not near genes chr3R 30260513 intergenic not near genes chr3R_18_30260001 chr3R_30260001 RAL-843 3332 chr3R 30274362 30274406 chr3R 30274504 30274547 5 141 10.0 0.0 5.0 0.8 185 chr3R 30274362 intergenic not near genes chr3R 30274454 intergenic not near genes chr3R 30274547 intergenic not near genes chr3R_5_30270001 chr3R_30270001 RAL-843 3333 chr3R 30287734 30287765 chr3R 30287867 30287898 6 133 11.0 2.0 6.5 0.8 164 chr3R 30287734 intron hdc + chr3R 30287816 intron hdc + chr3R 30287898 intron hdc + chr3R_6_30285001 chr3R_30285001 RAL-843 3334 chr3R 30317330 30317352 chr3R 30324937 30324994 roo 5 7632 0.0 1.0 0.5 3.3 7664 chr3R 30317330 intron hdc + chr3R 30321162 intron hdc + chr3R 30324994 intron hdc + chr3R_5_30320001 chr3R_30320001 RAL-843 3335 chr3R 30330451 30330521 chr3R 30330575 30330631 27 119 7.0 5.5 6.2 3.8 180 chr3R 30330451 intron hdc + chr3R 30330541 intron hdc + chr3R 30330631 intron hdc + chr3R_27_30330001 chr3R_30330001 RAL-843 3336 chr3R 30351377 30351384 chr3R 30351505 30351511 4 128 25.5 15.5 20.5 0.2 134 chr3R 30351377 intron hdc + chr3R 30351444 intron hdc + chr3R 30351511 intron hdc + chr3R_4_30350001 chr3R_30350001 RAL-843 3337 chr3R 30351386 30351434 chr3R 30351504 30351562 27 126 11.0 15.0 13.0 1.9 176 chr3R 30351386 intron hdc + chr3R 30351474 intron hdc + chr3R 30351562 intron hdc + chr3R_27_30350001 chr3R_30350001 RAL-843 3338 chr3R 30375511 30375571 chr3R 30383184 30383244 412 5 7673 5.0 8.5 6.8 0.6 7733 chr3R 30375511 intergenic not near genes chr3R 30379378 intergenic not near genes chr3R 30383244 intergenic not near genes chr3R_5_30375001 chr3R_30375001 RAL-843 3339 chr3R 30396174 30396232 chr3R 30404490 30404548 roo 19 8314 10.5 12.0 11.2 1.6 8374 chr3R 30396174 intergenic not near genes chr3R 30400361 intergenic not near genes chr3R 30404548 5` UTR CR45570 + chr3R_19_30400001 chr3R_30400001 RAL-843 3340 chr3R 30480443 30480505 chr3R 30482943 30483023 jockey 27 2514 9.0 10.5 9.8 2.5 2580 chr3R 30480443 intron PH4alphaEFB + chr3R 30481733 intron PH4alphaEFB + chr3R 30483023 intron PH4alphaEFB + chr3R_27_30480001 chr3R_30480001 RAL-843 3341 chr3R 30484991 30485065 chr3R 30485117 30485191 34 125 4.0 7.5 5.8 5.0 200 chr3R 30484991 intron PH4alphaEFB + chr3R 30485091 intron PH4alphaEFB + chr3R 30485191 intron PH4alphaEFB + chr3R_34_30485001 chr3R_30485001 RAL-843 3342 chr3R 30548296 30548312 chr3R 30548424 30548440 4 128 6.0 15.5 10.8 0.3 144 chr3R 30548296 intron tmod + chr3R 30548368 intron tmod + chr3R 30548440 intron tmod + chr3R_4_30545001 chr3R_30545001 RAL-843 3343 chr3R 30554353 30554424 chr3R 30554474 30554550 17 123 10.0 9.0 9.5 1.6 197 chr3R 30554353 intron tmod + chr3R 30554452 intron tmod + chr3R 30554550 intron tmod + chr3R_17_30550001 chr3R_30550001 RAL-843 3344 chr3R 30558108 30558153 chr3R 30558239 30558284 6 130 7.0 12.5 9.8 0.6 176 chr3R 30558108 intron,intron tmod +,CG34155 - chr3R 30558196 intron,intron tmod +,CG34155 - chr3R 30558284 intron,intron tmod +,CG34155 - chr3R_6_30555001 chr3R_30555001 RAL-843 3345 chr3R 30592465 30592536 chr3R 30592625 30592656 28 154 7.5 10.0 8.8 2.9 191 chr3R 30592465 intergenic not near genes chr3R 30592560 intergenic CG2246 - chr3R 30592656 intergenic CG2246 - chr3R_28_30590001 chr3R_30590001 RAL-843 3346 chr3R 30627565 30627583 chr3R 30627695 30627713 7 129 17.5 11.5 14.5 0.5 148 chr3R 30627565 3` UTR CG2267 - chr3R 30627639 exon CG2267 - chr3R 30627713 exon CG2267 - chr3R_7_30625001 chr3R_30625001 RAL-843 3347 chr3R 30627587 30627630 chr3R 30627688 30627741 22 121 11.5 10.0 10.8 1.9 154 chr3R 30627587 3` UTR CG2267 - chr3R 30627664 exon CG2267 - chr3R 30627741 exon CG2267 - chr3R_22_30625001 chr3R_30625001 RAL-843 3348 chr3R 30641664 30641690 chr3R 30641787 30641789 10 119 13.0 10.0 11.5 0.8 125 chr3R 30641664 intergenic not near genes chr3R 30641726 intergenic not near genes chr3R 30641789 intergenic not near genes chr3R_10_30640001 chr3R_30640001 RAL-843 3349 chr3R 30641693 30641719 chr3R 30641781 30641808 10 115 6.5 9.0 7.8 1.1 115 chr3R 30641693 intergenic not near genes chr3R 30641750 intergenic not near genes chr3R 30641808 intergenic not near genes chr3R_10_30640001 chr3R_30640001 RAL-843 3350 chr3R 30679494 30679552 chr3R 30687013 30687065 blood 18 7517 8.0 11.5 9.8 1.7 7571 chr3R 30679494 intergenic not near genes chr3R 30683280 intergenic not near genes chr3R 30687065 intergenic not near genes chr3R_18_30680001 chr3R_30680001 RAL-843 3351 chr3R 30689483 30689542 chr3R 30689612 30689671 24 127 7.5 12.0 9.8 2.2 188 chr3R 30689483 intergenic not near genes chr3R 30689577 intergenic not near genes chr3R 30689671 intergenic not near genes chr3R_24_30685001 chr3R_30685001 RAL-843 3352 chr3R 30700836 30700874 chr3R 30700995 30701056 9 174 4.0 0.5 2.2 2.8 220 chr3R 30700836 intergenic not near genes chr3R 30700946 intergenic not near genes chr3R 30701056 intergenic not near genes chr3R_9_30700001 chr3R_30700001 RAL-843 3353 chr3R 30720998 30721072 chr3R 30721204 30721252 21 196 8.0 5.0 6.5 2.8 254 chr3R 30720998 intergenic not near genes chr3R 30721125 intergenic not near genes chr3R 30721252 intergenic not near genes chr3R_21_30720001 chr3R_30720001 RAL-843 3354 chr3R 30747507 30747555 chr3R 30747633 30747666 12 119 7.0 4.0 5.5 1.8 159 chr3R 30747507 intergenic CR43238 - chr3R 30747586 intergenic CR43238 - chr3R 30747666 intergenic CR43238 - chr3R_12_30745001 chr3R_30745001 RAL-843 3355 chr3R 30765596 30765659 chr3R 30765810 30765870 17 196 8.0 12.5 10.2 1.5 274 chr3R 30765596 intergenic zfh1 + chr3R 30765733 intergenic zfh1 + chr3R 30765870 intergenic zfh1 + chr3R_17_30765001 chr3R_30765001 RAL-843 3356 chr3R 30812673 30812753 chr3R 30812811 30812891 20 137 6.5 4.5 5.5 3.1 218 chr3R 30812673 intron cindr + chr3R 30812782 intron cindr + chr3R 30812891 intron cindr + chr3R_20_30810001 chr3R_30810001 RAL-843 3357 chr3R 30818769 30818831 chr3R 30820384 30820437 1360 29 1614 10.0 7.5 8.8 3.0 1668 chr3R 30818769 intron cindr + chr3R 30819603 intron cindr + chr3R 30820437 intron cindr + chr3R_29_30815001 chr3R_30815001 RAL-843 3358 chr3R 30821354 30821420 chr3R 30821492 30821550 6 135 3.0 2.0 2.5 1.7 196 chr3R 30821354 intron cindr + chr3R 30821452 intron cindr + chr3R 30821550 intron cindr + chr3R_6_30820001 chr3R_30820001 RAL-843 3359 chr3R 30823385 30823405 chr3R 30823531 30823551 6 146 8.0 10.5 9.2 0.6 166 chr3R 30823385 intron cindr + chr3R 30823468 intron cindr + chr3R 30823551 intron cindr + chr3R_6_30820001 chr3R_30820001 RAL-843 3360 chr3R 30823406 30823415 chr3R 30823522 30823561 7 142 5.5 9.0 7.2 0.9 155 chr3R 30823406 intron cindr + chr3R 30823484 intron cindr + chr3R 30823561 intron cindr + chr3R_7_30820001 chr3R_30820001 RAL-843 3361 chr3R 30859357 30859418 chr3R 30859485 30859546 22 128 9.5 5.5 7.5 2.6 189 chr3R 30859357 intergenic not near genes chr3R 30859452 intergenic not near genes chr3R 30859546 intergenic not near genes chr3R_22_30855001 chr3R_30855001 RAL-843 3362 chr3R 30868697 30868729 chr3R 30868813 30868855 17 124 5.5 8.5 7.0 2.1 158 chr3R 30868697 3` UTR Cpr100A + chr3R 30868776 3` UTR Cpr100A + chr3R 30868855 3` UTR Cpr100A + chr3R_17_30865001 chr3R_30865001 RAL-843 3363 chr3R 30868736 30868747 chr3R 30868862 30868873 4 126 3.0 16.5 9.8 0.4 137 chr3R 30868736 3` UTR Cpr100A + chr3R 30868804 3` UTR Cpr100A + chr3R 30868873 3` UTR Cpr100A + chr3R_4_30865001 chr3R_30865001 RAL-843 3364 chr3R 30980802 30980822 chr3R 30980928 30980948 8 125 8.0 7.5 7.8 0.9 146 chr3R 30980802 intron 5-HT7 - chr3R 30980875 intron 5-HT7 - chr3R 30980948 intron 5-HT7 - chr3R_8_30980001 chr3R_30980001 RAL-843 3365 chr3R 30982569 30982613 chr3R 30982690 30982730 7 125 5.5 4.0 4.8 1.2 161 chr3R 30982569 intron 5-HT7 - chr3R 30982650 intron 5-HT7 - chr3R 30982730 intron 5-HT7 - chr3R_7_30980001 chr3R_30980001 RAL-843 3366 chr3R 31042066 31042140 chr3R 31042203 31042277 38 137 5.0 7.0 6.0 5.4 211 chr3R 31042066 exon CanA1 + chr3R 31042172 intron CanA1 + chr3R 31042277 exon CanA1 + chr3R_38_31040001 chr3R_31040001 RAL-843 3367 chr3R 31062605 31062669 chr3R 31062736 31062800 40 129 7.0 7.0 7.0 5.0 195 chr3R 31062605 intergenic not near genes chr3R 31062702 intergenic not near genes chr3R 31062800 intergenic not near genes chr3R_40_31060001 chr3R_31060001 RAL-843 3368 chr3R 31074189 31074260 chr3R 31081837 31081915 springer 10 7653 10.0 2.0 6.0 1.4 7726 chr3R 31074189 intron Sox100B + chr3R 31078052 intron Sox100B + chr3R 31081915 exon Sox100B + chr3R_10_31075001 chr3R_31075001 RAL-843 3369 chr3R 31105168 31105248 chr3R 31105475 31105540 29 303 3.5 3.5 3.5 6.4 372 chr3R 31105168 intergenic not near genes chr3R 31105354 intergenic not near genes chr3R 31105540 intergenic not near genes chr3R_29_31105001 chr3R_31105001 RAL-843 3370 chr3R 31137101 31137181 chr3R 31137234 31137311 30 127 4.0 6.5 5.2 4.8 210 chr3R 31137101 intron Gycbeta100B + chr3R 31137206 intron Gycbeta100B + chr3R 31137311 intron Gycbeta100B + chr3R_30_31135001 chr3R_31135001 RAL-843 3371 chr3R 31156477 31156502 chr3R 31156578 31156634 10 122 1.0 2.0 1.5 4.0 157 chr3R 31156477 intron Gycbeta100B + chr3R 31156556 intron Gycbeta100B + chr3R 31156634 intron Gycbeta100B + chr3R_10_31155001 chr3R_31155001 RAL-843 3372 chr3R 31165087 31165094 chr3R 31165272 31165279 6 185 26.5 9.5 18.0 0.3 192 chr3R 31165087 intron,intron Gycbeta100B +,stops - chr3R 31165183 intron,intron Gycbeta100B +,stops - chr3R 31165279 intron,intron Gycbeta100B +,stops - chr3R_6_31165001 chr3R_31165001 RAL-843 3373 chr3R 31165096 31165158 chr3R 31165271 31165333 32 183 10.0 9.5 9.8 3.0 237 chr3R 31165096 intron,intron Gycbeta100B +,stops - chr3R 31165214 intron,intron Gycbeta100B +,stops - chr3R 31165333 intron,intron Gycbeta100B +,stops - chr3R_32_31165001 chr3R_31165001 RAL-843 3374 chr3R 31270849 31270929 chr3R 31270981 31271064 6 134 9.0 0.0 4.5 1.1 215 chr3R 31270849 intergenic not near genes chr3R 31270956 intergenic not near genes chr3R 31271064 intergenic not near genes chr3R_6_31270001 chr3R_31270001 RAL-843 3375 chr3R 31279329 31279399 chr3R 31285570 31285584 diver 19 6232 10.0 11.5 10.8 1.6 6255 chr3R 31279329 intergenic not near genes chr3R 31282456 intergenic not near genes chr3R 31285584 intergenic not near genes chr3R_19_31280001 chr3R_31280001 RAL-843 3376 chr3R 31330398 31330406 chr3R 31335650 31335653 copia 5 5251 18.5 12.0 15.2 0.3 5255 chr3R 31330398 intron CG34347 + chr3R 31333026 intron CG34347 + chr3R 31335653 intron CG34347 + chr3R_5_31330001 chr3R_31330001 RAL-843 3377 chr3R 31413049 31413066 chr3R 31418299 31418311 copia 8 5248 19.0 10.5 14.8 0.5 5262 chr3R 31413049 intron Gprk2 + chr3R 31415680 intron Gprk2 + chr3R 31418311 intron Gprk2 + chr3R_8_31415001 chr3R_31415001 RAL-843 3378 chr3R 31413067 31413114 chr3R 31418297 31418336 copia 18 5240 10.5 9.5 10.0 1.6 5269 chr3R 31413067 intron Gprk2 + chr3R 31415702 intron Gprk2 + chr3R 31418336 intron Gprk2 + chr3R_18_31415001 chr3R_31415001 RAL-843 3379 chr3R 31426838 31426902 chr3R 31426980 31427044 40 142 7.0 10.5 8.8 4.1 206 chr3R 31426838 intron Gprk2 + chr3R 31426941 intron Gprk2 + chr3R 31427044 intron Gprk2 + chr3R_40_31425001 chr3R_31425001 RAL-843 3380 chr3R 31435313 31435385 chr3R 31435515 31435587 39 202 9.0 7.0 8.0 4.3 274 chr3R 31435313 intron Gprk2 + chr3R 31435450 intron Gprk2 + chr3R 31435587 intron Gprk2 + chr3R_39_31435001 chr3R_31435001 RAL-843 3381 chr3R 31450758 31450804 chr3R 31450900 31450960 12 148 74.0 70.0 72.0 0.2 202 chr3R 31450758 intron Gprk2 + chr3R 31450859 intron Gprk2 + chr3R 31450960 intron Gprk2 + chr3R_12_31450001 chr3R_31450001 RAL-843 3382 chr3R 31453170 31453244 chr3R 31453298 31453372 33 126 14.5 16.0 15.2 2.0 202 chr3R 31453170 intron Gprk2 + chr3R 31453271 intron Gprk2 + chr3R 31453372 exon Gprk2 + chr3R_33_31450001 chr3R_31450001 RAL-843 3383 chr3R 31501275 31501346 chr3R 31501454 31501524 34 176 8.0 10.0 9.0 3.4 249 chr3R 31501275 intron mey + chr3R 31501400 intron mey + chr3R 31501524 intron mey + chr3R_34_31500001 chr3R_31500001 RAL-843 3384 chr3R 31548875 31548891 chr3R 31548999 31549000 6 123 16.0 19.0 17.5 0.3 125 chr3R 31548875 intron nyo + chr3R 31548938 intron nyo + chr3R 31549000 intron nyo + chr3R_6_31545001 chr3R_31545001 RAL-843 3385 chr3R 31630010 31630084 chr3R 31630165 31630239 25 152 6.0 4.5 5.2 4.0 229 chr3R 31630010 intron kek6 + chr3R 31630124 intron kek6 + chr3R 31630239 intron kek6 + chr3R_25_31630001 chr3R_31630001 RAL-843 3386 chr3R 31637811 31637876 chr3R 31637949 31638001 19 136 7.5 7.5 7.5 2.2 190 chr3R 31637811 intron kek6 + chr3R 31637906 intron kek6 + chr3R 31638001 intron kek6 + chr3R_19_31635001 chr3R_31635001 RAL-843 3387 chr3R 31691490 31691499 chr3R 31696306 31696313 Doc 5 4816 24.5 11.0 17.8 0.3 4823 chr3R 31691490 intergenic not near genes chr3R 31693902 intergenic not near genes chr3R 31696313 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-843 3388 chr3R 31691501 31691511 chr3R 31696303 31696327 Doc 6 4811 23.0 9.0 16.0 0.4 4826 chr3R 31691501 intergenic not near genes chr3R 31693914 intergenic not near genes chr3R 31696327 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-843 3389 chr3R 31691513 31691556 chr3R 31696296 31696372 Doc 27 4809 9.0 9.0 9.0 2.7 4859 chr3R 31691513 intergenic not near genes chr3R 31693942 intergenic not near genes chr3R 31696372 intergenic not near genes chr3R_27_31690001 chr3R_31690001 RAL-843 3390 chr3R 31725964 31725969 chr3R 31726091 31726095 4 127 26.0 9.5 17.8 0.2 131 chr3R 31725964 intron ttk + chr3R 31726030 intron ttk + chr3R 31726095 intron ttk + chr3R_4_31725001 chr3R_31725001 RAL-843 3391 chr3R 31725976 31726019 chr3R 31726088 31726140 21 123 14.5 9.5 12.0 1.6 164 chr3R 31725976 intron ttk + chr3R 31726058 intron ttk + chr3R 31726140 intron ttk + chr3R_21_31725001 chr3R_31725001 RAL-843 3392 chr3R 31762802 31762871 chr3R 31762929 31762997 35 127 12.0 12.0 12.0 2.7 195 chr3R 31762802 intergenic not near genes chr3R 31762900 intergenic CG2150 - chr3R 31762997 intergenic CG2150 - chr3R_35_31760001 chr3R_31760001 RAL-843 3393 chr3R 31829598 31829671 chr3R 31829760 31829834 35 154 7.5 5.0 6.2 4.9 236 chr3R 31829598 intron RhoGAP100F + chr3R 31829716 intron RhoGAP100F + chr3R 31829834 intron RhoGAP100F + chr3R_35_31825001 chr3R_31825001 RAL-843 3394 chr3R 31866384 31866398 chr3R 31866499 31866502 7 124 10.0 7.5 8.8 0.7 118 chr3R 31866384 exon heph - chr3R 31866443 intron heph - chr3R 31866502 intron heph - chr3R_7_31865001 chr3R_31865001 RAL-843 3395 chr3R 31897802 31897823 chr3R 31897987 31897992 4 182 18.5 7.5 13.0 0.3 190 chr3R 31897802 intron heph - chr3R 31897897 intron heph - chr3R 31897992 intron heph - chr3R_4_31895001 chr3R_31895001 RAL-843 3396 chr3R 31897824 31897874 chr3R 31897985 31898060 13 181 5.0 7.5 6.2 1.8 236 chr3R 31897824 intron heph - chr3R 31897942 intron heph - chr3R 31898060 intron heph - chr3R_13_31895001 chr3R_31895001 RAL-843 3397 chr3R 31911639 31911703 chr3R 31911775 31911839 28 132 9.0 9.0 9.0 2.8 200 chr3R 31911639 intron heph - chr3R 31911739 intron heph - chr3R 31911839 intron heph - chr3R_28_31910001 chr3R_31910001 RAL-843 3398 chr3R 31930523 31930586 chr3R 31930645 31930718 29 128 11.0 10.0 10.5 2.5 195 chr3R 31930523 intron heph - chr3R 31930620 intron heph - chr3R 31930718 intron heph - chr3R_29_31930001 chr3R_31930001 RAL-843 3399 chr3R 31931143 31931213 chr3R 31931276 31931331 35 132 5.5 6.0 5.8 5.1 188 chr3R 31931143 intron heph - chr3R 31931237 intron heph - chr3R 31931331 intron heph - chr3R_35_31930001 chr3R_31930001 RAL-843 3400 chr3R 31957957 31957977 chr3R 31958089 31958109 8 132 0.0 5.0 2.5 2.3 152 chr3R 31957957 intron heph - chr3R 31958033 intron heph - chr3R 31958109 intron heph - chr3R_8_31955001 chr3R_31955001 RAL-843 3401 chr3R 31997944 31998015 chr3R 32005464 32005535 blood 22 7518 11.0 2.0 6.5 2.9 7591 chr3R 31997944 intron heph - chr3R 32001740 intron heph - chr3R 32005535 intron heph - chr3R_22_32000001 chr3R_32000001 RAL-843 3402 chr3R 32016661 32016735 chr3R 32016790 32016864 27 129 6.0 10.0 8.0 3.0 203 chr3R 32016661 5` UTR CR45557 + chr3R 32016762 5` UTR CR45557 + chr3R 32016864 5` UTR CR45557 + chr3R_27_32015001 chr3R_32015001 RAL-843 3403 chr3R 32034216 32034283 chr3R 32034349 32034413 28 132 10.0 9.0 9.5 2.7 197 chr3R 32034216 intergenic not near genes chr3R 32034314 intergenic not near genes chr3R 32034413 intergenic not near genes chr3R_28_32030001 chr3R_32030001 RAL-843 3404 chr3R 32039589 32039651 chr3R 32039718 32039780 30 128 12.5 3.5 8.0 3.3 191 chr3R 32039589 3` UTR CG2053 + chr3R 32039684 3` UTR CG2053 + chr3R 32039780 intergenic CG2053 + chr3R_30_32035001 chr3R_32035001 RAL-843 3405 chr3R 32061698 32061763 chr3R 32061992 32062057 25 294 59.0 49.0 54.0 0.5 359 chr3R 32061698 intron Map205 - chr3R 32061878 intron Map205 - chr3R 32062057 intron Map205 - chr3R_25_32060001 chr3R_32060001 RAL-843 3406 chr4 76453 76509 chr4 81946 82002 I-element 19 5487 13.0 10.0 11.5 1.5 5549 chr4 76453 intron pan + chr4 79228 intron pan + chr4 82002 intron pan + chr4_19_75001 chr4_75001 RAL-843 3407 chr4 319948 320017 chr4 328174 328243 Stalker2 18 8226 6.0 11.5 8.8 1.8 8295 chr4 319948 3` UTR CG32850 + chr4 324096 intron CG32850 + chr4 328243 3` UTR,3` UTR CG32850 +,PMCA - chr4_18_320001 chr4_320001 RAL-843 3408 chr4 419465 419513 chr4 419646 419724 17 184 51.0 52.5 51.8 0.3 259 chr4 419465 intergenic not near genes chr4 419594 intergenic not near genes chr4 419724 intergenic not near genes chr4_17_415001 chr4_415001 RAL-843 3409 chr4 671566 671587 chr4 680199 680220 Tirant 15 8632 19.0 13.0 16.0 0.9 8654 chr4 671566 intron CG11360 + chr4 675893 intron CG11360 + chr4 680220 intron CG11360 + chr4_15_675001 chr4_675001 RAL-843 3410 chr4 671590 671625 chr4 680187 680258 Tirant 31 8629 10.0 10.5 10.2 2.8 8668 chr4 671590 intron CG11360 + chr4 675924 intron CG11360 + chr4 680258 intron CG11360 + chr4_31_675001 chr4_675001 RAL-843 3411 chr4 959592 959652 chr4 959816 959830 27 227 6.5 11.0 8.8 2.8 238 chr4 959592 intergenic CR44030 +,CR45201 - chr4 959711 5` UTR CR44030 + chr4 959830 5` UTR CR44030 + chr4_27_955001 chr4_955001 RAL-843 3412 chr4 972454 972510 chr4 972586 972642 16 132 7.5 4.0 5.8 2.4 188 chr4 972454 intron fuss - chr4 972548 intron fuss - chr4 972642 intron fuss - chr4_16_970001 chr4_970001 RAL-843 3413 chrX 201027 201064 chrX 201115 201192 20 116 4.5 5.5 5.0 3.3 165 chrX 201027 intergenic not near genes chrX 201110 intergenic not near genes chrX 201192 intergenic not near genes chrX_20_200001 chrX_200001 RAL-843 3414 chrX 295812 295831 chrX 303482 303501 412 7 7669 17.0 7.5 12.2 0.5 7689 chrX 295812 intron CG3777 + chrX 299656 intron CG3777 + chrX 303501 intron CG3777 + chrX_7_295001 chrX_295001 RAL-843 3415 chrX 295832 295881 chrX 303479 303551 412 18 7668 8.0 7.5 7.8 2.0 7719 chrX 295832 intron CG3777 + chrX 299692 intron CG3777 + chrX 303551 intron CG3777 + chrX_18_295001 chrX_295001 RAL-843 3416 chrX 318438 318491 chrX 323574 323627 flea 27 5136 9.0 10.5 9.8 2.5 5189 chrX 318438 intron,intron CG3777 +,CG32816 - chrX 321032 intron,intron CG3777 +,CG32816 - chrX 323627 intron,intron CG3777 +,CG32816 - chrX_27_320001 chrX_320001 RAL-843 3417 chrX 367002 367059 chrX 367149 367206 21 146 4.0 4.0 4.0 4.2 204 chrX 367002 intron,5` UTR CG32816 -,yar + chrX 367104 intron CG32816 - chrX 367206 intron CG32816 - chrX_21_365001 chrX_365001 RAL-843 3418 chrX 428378 428410 chrX 434612 434645 3S18 15 6235 10.0 5.5 7.8 1.7 6267 chrX 428378 intron CG32816 - chrX 431512 intron CG32816 - chrX 434645 intron CG32816 - chrX_15_430001 chrX_430001 RAL-843 3419 chrX 428414 428443 chrX 434606 434678 3S18 11 6231 5.5 5.0 5.2 1.8 6264 chrX 428414 intron CG32816 - chrX 431546 intron CG32816 - chrX 434678 intron CG32816 - chrX_11_430001 chrX_430001 RAL-843 3420 chrX 449843 449910 chrX 449990 450057 24 146 10.0 5.5 7.8 2.7 214 chrX 449843 intron CG32816 - chrX 449950 intron CG32816 - chrX 450057 intron CG32816 - chrX_24_445001 chrX_445001 RAL-843 3421 chrX 450318 450367 chrX 450446 450495 15 128 11.5 7.0 9.2 1.5 177 chrX 450318 intron CG32816 - chrX 450406 intron CG32816 - chrX 450495 intron CG32816 - chrX_15_450001 chrX_450001 RAL-843 3422 chrX 547592 547659 chrX 547886 547933 25 293 7.5 8.0 7.8 2.8 341 chrX 547592 intron Appl + chrX 547762 intron Appl + chrX 547933 intron Appl + chrX_25_545001 chrX_545001 RAL-843 3423 chrX 551395 551453 chrX 559000 559065 412 16 7607 9.5 8.0 8.8 1.6 7670 chrX 551395 intron Appl + chrX 555230 intron Appl + chrX 559065 intron Appl + chrX_16_555001 chrX_555001 RAL-843 3424 chrX 561541 561601 chrX 561677 561747 5 144 12.0 12.0 12.0 0.4 206 chrX 561541 intron Appl + chrX 561644 intron Appl + chrX 561747 intron Appl + chrX_5_560001 chrX_560001 RAL-843 3425 chrX 667606 667673 chrX 667740 667805 25 133 8.5 0.0 4.2 4.8 199 chrX 667606 intergenic not near genes chrX 667706 intergenic not near genes chrX 667805 intergenic not near genes chrX_25_665001 chrX_665001 RAL-843 3426 chrX 670222 670292 chrX 670353 670402 10 123 0.0 5.0 2.5 2.9 180 chrX 670222 intergenic not near genes chrX 670312 intergenic not near genes chrX 670402 intergenic not near genes chrX_10_670001 chrX_670001 RAL-843 3427 chrX 680787 680867 chrX 680920 680997 30 130 5.0 6.0 5.5 4.6 210 chrX 680787 intergenic not near genes chrX 680892 intergenic not near genes chrX 680997 intergenic not near genes chrX_30_680001 chrX_680001 RAL-843 3428 chrX 802250 802300 chrX 802372 802405 21 119 14.5 9.0 11.8 1.6 155 chrX 802250 exon CG13359 - chrX 802328 exon CG13359 - chrX 802405 exon CG13359 - chrX_21_800001 chrX_800001 RAL-843 3429 chrX 812220 812298 chrX 817905 817951 297 15 5678 7.0 10.5 8.8 1.5 5731 chrX 812220 intron CG43867 - chrX 815086 intron CG43867 - chrX 817951 intron CG43867 - chrX_15_815001 chrX_815001 RAL-843 3430 chrX 827560 827630 chrX 835402 835472 roo 27 7839 8.5 8.0 8.2 2.9 7912 chrX 827560 intron CG43867 - chrX 831516 intron CG43867 - chrX 835472 intron CG43867 - chrX_27_830001 chrX_830001 RAL-843 3431 chrX 906655 906721 chrX 908493 908560 S-element 34 1838 4.5 10.0 7.2 4.1 1905 chrX 906655 intron CG43867 - chrX 907608 intron CG43867 - chrX 908560 intron CG43867 - chrX_34_905001 chrX_905001 RAL-843 3432 chrX 911989 912039 chrX 912114 912179 21 137 9.0 11.0 10.0 1.9 190 chrX 911989 intron CG43867 - chrX 912084 intron CG43867 - chrX 912179 intron CG43867 - chrX_21_910001 chrX_910001 RAL-843 3433 chrX 983725 983799 chrX 983893 983955 18 158 6.0 7.5 6.8 2.3 230 chrX 983725 intergenic not near genes chrX 983840 intergenic not near genes chrX 983955 intergenic not near genes chrX_18_980001 chrX_980001 RAL-843 3434 chrX 1033307 1033385 chrX 1040990 1041020 412 6 7673 3.0 9.0 6.0 0.9 7713 chrX 1033307 intron su(w[a]) + chrX 1037164 intron su(w[a]) + chrX 1041020 intron su(w[a]) + chrX_6_1035001 chrX_1035001 RAL-843 3435 chrX 1050520 1050583 chrX 1050630 1050709 18 123 7.5 6.0 6.8 2.3 189 chrX 1050520 intron CR44779 + chrX 1050614 intron CR44779 + chrX 1050709 intron CR44779 + chrX_18_1050001 chrX_1050001 RAL-843 3436 chrX 1051033 1051091 chrX 1051161 1051174 20 125 16.0 16.5 16.2 1.2 141 chrX 1051033 intron CR44779 + chrX 1051104 intron CR44779 + chrX 1051174 intron CR44779 + chrX_20_1050001 chrX_1050001 RAL-843 3437 chrX 1063715 1063751 chrX 1072558 1072594 roo 9 8843 14.5 10.5 12.5 0.7 8879 chrX 1063715 intron CR44779 + chrX 1068154 intron CR44779 + chrX 1072594 intron CR44779 + chrX_9_1065001 chrX_1065001 RAL-843 3438 chrX 1253691 1253695 chrX 1253822 1253827 4 131 17.5 6.5 12.0 0.3 136 chrX 1253691 intron Atf3 - chrX 1253759 intron Atf3 - chrX 1253827 intron Atf3 - chrX_4_1250001 chrX_1250001 RAL-843 3439 chrX 1253696 1253713 chrX 1253817 1253845 6 126 14.5 6.0 10.2 0.5 149 chrX 1253696 intron Atf3 - chrX 1253770 intron Atf3 - chrX 1253845 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-843 3440 chrX 1253721 1253762 chrX 1253815 1253894 22 126 7.0 6.0 6.5 2.9 173 chrX 1253721 intron Atf3 - chrX 1253808 intron Atf3 - chrX 1253894 intron Atf3 - chrX_22_1250001 chrX_1250001 RAL-843 3441 chrX 1357734 1357796 chrX 1367954 1368016 Doc 23 10219 8.0 7.5 7.8 2.6 10282 chrX 1357734 intergenic png - chrX 1362875 intergenic not near genes chrX 1368016 intergenic not near genes chrX_23_1360001 chrX_1360001 RAL-843 3442 chrX 1481394 1481414 chrX 1481537 1481557 10 143 19.5 12.0 15.8 0.6 163 chrX 1481394 3` UTR rush + chrX 1481476 intergenic rush +,sta - chrX 1481557 intergenic rush +,sta - chrX_10_1480001 chrX_1480001 RAL-843 3443 chrX 1517995 1518034 chrX 1523447 1523486 jockey 14 5447 16.5 11.5 14.0 0.9 5491 chrX 1517995 intergenic inc + chrX 1520740 intergenic not near genes chrX 1523486 intergenic not near genes chrX_14_1520001 chrX_1520001 RAL-843 3444 chrX 1518035 1518060 chrX 1523444 1523512 jockey 10 5439 10.5 11.0 10.8 0.8 5477 chrX 1518035 intergenic inc + chrX 1520774 intergenic not near genes chrX 1523512 intergenic not near genes chrX_10_1520001 chrX_1520001 RAL-843 3445 chrX 1554478 1554534 chrX 1554674 1554722 24 199 31.5 45.5 38.5 0.6 244 chrX 1554478 exon Mur2B - chrX 1554600 intron Mur2B - chrX 1554722 exon Mur2B - chrX_24_1550001 chrX_1550001 RAL-843 3446 chrX 1627266 1627308 chrX 1627393 1627419 15 123 12.5 11.0 11.8 1.2 153 chrX 1627266 intron,intron Mur2B -,br + chrX 1627342 intron,intron Mur2B -,br + chrX 1627419 intron,intron Mur2B -,br + chrX_15_1625001 chrX_1625001 RAL-843 3447 chrX 1651611 1651656 chrX 1651742 1651777 20 130 12.0 6.5 9.2 2.0 166 chrX 1651611 intron Mur2B - chrX 1651694 intron Mur2B - chrX 1651777 intron Mur2B - chrX_20_1650001 chrX_1650001 RAL-843 3448 chrX 1930494 1930561 chrX 1938115 1938182 opus 27 7621 7.5 5.5 6.5 3.6 7688 chrX 1930494 3` UTR CG11596 + chrX 1934338 intergenic not near genes chrX 1938182 3` UTR CG3857 - chrX_27_1930001 chrX_1930001 RAL-843 3449 chrX 1954863 1954893 chrX 1962831 1962881 Stalker2 8 7973 14.0 8.0 11.0 0.7 8018 chrX 1954863 intron Hr4 + chrX 1958872 intron Hr4 + chrX 1962881 intron Hr4 + chrX_8_1955001 chrX_1955001 RAL-843 3450 chrX 1954895 1954913 chrX 1962826 1962874 Stalker2 6 7956 10.0 7.0 8.5 0.6 7979 chrX 1954895 intron Hr4 + chrX 1958884 intron Hr4 + chrX 1962874 intron Hr4 + chrX_6_1955001 chrX_1955001 RAL-843 3451 chrX 2308793 2308813 chrX 2317426 2317430 Tirant 6 8629 14.0 13.5 13.8 0.4 8637 chrX 2308793 intron phl + chrX 2313112 intron phl + chrX 2317430 intron phl + chrX_6_2310001 chrX_2310001 RAL-843 3452 chrX 2399815 2399863 chrX 2408193 2408210 roo 10 8378 7.5 0.0 3.8 2.1 8395 chrX 2399815 intergenic not near genes chrX 2404012 intergenic not near genes chrX 2408210 intergenic not near genes chrX_10_2400001 chrX_2400001 RAL-843 3453 chrX 2482723 2482740 chrX 2482850 2482868 8 127 13.5 7.5 10.5 0.7 145 chrX 2482723 intron trol - chrX 2482796 intron trol - chrX 2482868 intron trol - chrX_8_2480001 chrX_2480001 RAL-843 3454 chrX 2578769 2578842 chrX 2578911 2578984 33 140 4.5 11.5 8.0 3.7 215 chrX 2578769 intergenic Pdfr +,Vha36-3 - chrX 2578876 intergenic Vha36-3 -,Pdfr + chrX 2578984 intergenic Vha36-3 -,Pdfr + chrX_33_2575001 chrX_2575001 RAL-843 3455 chrX 2610344 2610404 chrX 2617511 2617571 HMS-Beagle 10 7167 6.0 10.0 8.0 1.1 7227 chrX 2610344 intergenic CG8636 - chrX 2613958 intergenic not near genes chrX 2617571 intergenic Tsp3A - chrX_10_2610001 chrX_2610001 RAL-843 3456 chrX 2635323 2635401 chrX 2635482 2635560 44 156 3.5 9.0 6.2 6.1 237 chrX 2635323 intron sgg + chrX 2635442 intron sgg + chrX 2635560 intron sgg + chrX_44_2635001 chrX_2635001 RAL-843 3457 chrX 2664323 2664342 chrX 2665529 2665548 1360 6 1204 18.0 0.5 9.2 0.6 1225 chrX 2664323 intron sgg + chrX 2664936 intron sgg + chrX 2665548 intron sgg + chrX_6_2660001 chrX_2660001 RAL-843 3458 chrX 2664352 2664403 chrX 2665528 2665605 1360 7 1198 3.5 0.5 2.0 2.3 1253 chrX 2664352 intron sgg + chrX 2664978 intron sgg + chrX 2665605 intron sgg + chrX_7_2660001 chrX_2660001 RAL-843 3459 chrX 2823754 2823776 chrX 2832352 2832363 roo 5 8595 10.5 8.0 9.2 0.5 8609 chrX 2823754 intron kirre + chrX 2828058 intron kirre + chrX 2832363 intron kirre + chrX_5_2825001 chrX_2825001 RAL-843 3460 chrX 2844854 2844933 chrX 2852314 2852371 mdg1 19 7458 5.0 5.5 5.2 3.1 7517 chrX 2844854 intron kirre + chrX 2848612 intron kirre + chrX 2852371 intron kirre + chrX_19_2845001 chrX_2845001 RAL-843 3461 chrX 2917061 2917121 chrX 2917191 2917255 24 130 4.0 5.5 4.8 4.1 194 chrX 2917061 intron kirre + chrX 2917158 intron kirre + chrX 2917255 intron kirre + chrX_24_2915001 chrX_2915001 RAL-843 3462 chrX 2932215 2932226 chrX 2932328 2932334 4 144 9.5 0.0 4.8 0.7 119 chrX 2932215 intron,exon kirre +,CG32793 + chrX 2932274 intron,exon kirre +,CG32793 + chrX 2932334 intron,exon kirre +,CG32793 + chrX_4_2930001 chrX_2930001 RAL-843 3463 chrX 2932227 2932243 chrX 2932320 2932391 6 117 5.0 0.0 2.5 1.7 164 chrX 2932227 intron,exon kirre +,CG32793 + chrX 2932309 intron,exon kirre +,CG32793 + chrX 2932391 intron,exon kirre +,CG32793 + chrX_6_2930001 chrX_2930001 RAL-843 3464 chrX 2971983 2972052 chrX 2972173 2972232 26 185 4.0 4.5 4.2 5.0 249 chrX 2971983 intron,intron kirre +,rst - chrX 2972108 intron,intron kirre +,rst - chrX 2972232 intron,intron kirre +,rst - chrX_26_2970001 chrX_2970001 RAL-843 3465 chrX 3031514 3031536 chrX 3031983 3032060 23 473 41.0 45.0 43.0 0.5 546 chrX 3031514 intron kirre + chrX 3031787 intron kirre + chrX 3032060 intron kirre + chrX_23_3030001 chrX_3030001 RAL-843 3466 chrX 3057982 3058043 chrX 3058273 3058334 pogo 22 290 6.0 6.0 6.0 3.1 352 chrX 3057982 intron kirre + chrX 3058158 intron kirre + chrX 3058334 intron kirre + chrX_22_3055001 chrX_3055001 RAL-843 3467 chrX 3075580 3075616 chrX 3080942 3080978 Transpac 5 5362 7.5 1.0 4.2 1.0 5398 chrX 3075580 intron kirre + chrX 3078279 intron kirre + chrX 3080978 intron kirre + chrX_5_3075001 chrX_3075001 RAL-843 3468 chrX 3082546 3082605 chrX 3082673 3082682 18 111 6.0 7.0 6.5 2.4 136 chrX 3082546 intron kirre + chrX 3082614 intron kirre + chrX 3082682 intron kirre + chrX_18_3080001 chrX_3080001 RAL-843 3469 chrX 3109395 3109469 chrX 3109522 3109596 18 127 7.5 5.5 6.5 2.4 201 chrX 3109395 intron kirre + chrX 3109496 intron kirre + chrX 3109596 intron kirre + chrX_18_3105001 chrX_3105001 RAL-843 3470 chrX 3111032 3111038 chrX 3111162 3111168 4 129 6.0 0.0 3.0 1.0 136 chrX 3111032 intron kirre + chrX 3111100 intron kirre + chrX 3111168 intron kirre + chrX_4_3110001 chrX_3110001 RAL-843 3471 chrX 3120612 3120642 chrX 3120739 3120760 7 124 3.5 4.0 3.8 1.5 148 chrX 3120612 intron kirre + chrX 3120686 intron kirre + chrX 3120760 intron kirre + chrX_7_3120001 chrX_3120001 RAL-843 3472 chrX 3212591 3212606 chrX 3212726 3212741 5 135 7.0 12.5 9.8 0.5 150 chrX 3212591 intron dnc + chrX 3212666 intron dnc + chrX 3212741 intron dnc + chrX_5_3210001 chrX_3210001 RAL-843 3473 chrX 3218492 3218510 chrX 3227691 3227709 roo 4 9199 1.5 6.0 3.8 0.8 9217 chrX 3218492 intron dnc + chrX 3223100 intron dnc + chrX 3227709 intron dnc + chrX_4_3220001 chrX_3220001 RAL-843 3474 chrX 3243612 3243643 chrX 3243752 3243783 10 140 9.0 15.5 12.2 0.8 171 chrX 3243612 intron dnc + chrX 3243698 intron dnc + chrX 3243783 intron dnc + chrX_10_3240001 chrX_3240001 RAL-843 3475 chrX 3295654 3295720 chrX 3295801 3295865 17 146 6.5 6.0 6.2 2.4 211 chrX 3295654 intron dnc + chrX 3295760 intron dnc + chrX 3295865 intron dnc + chrX_17_3295001 chrX_3295001 RAL-843 3476 chrX 3297765 3297777 chrX 3297897 3297909 8 132 17.0 11.0 14.0 0.5 144 chrX 3297765 intron dnc + chrX 3297837 intron dnc + chrX 3297909 intron dnc + chrX_8_3295001 chrX_3295001 RAL-843 3477 chrX 3297778 3297794 chrX 3297894 3297925 5 129 13.5 9.5 11.5 0.4 147 chrX 3297778 intron dnc + chrX 3297852 intron dnc + chrX 3297925 intron dnc + chrX_5_3295001 chrX_3295001 RAL-843 3478 chrX 3306303 3306372 chrX 3306435 3306504 11 132 8.0 0.0 4.0 2.2 201 chrX 3306303 intron dnc + chrX 3306404 intron dnc + chrX 3306504 intron dnc + chrX_11_3305001 chrX_3305001 RAL-843 3479 chrX 3351756 3351811 chrX 3351891 3351947 18 117 11.0 8.5 9.8 1.7 191 chrX 3351756 intergenic not near genes chrX 3351852 intergenic not near genes chrX 3351947 intergenic not near genes chrX_18_3350001 chrX_3350001 RAL-843 3480 chrX 3352732 3352749 chrX 3352870 3352888 5 139 8.0 0.5 4.2 1.0 156 chrX 3352732 intergenic not near genes chrX 3352810 intergenic not near genes chrX 3352888 intergenic not near genes chrX_5_3350001 chrX_3350001 RAL-843 3481 chrX 3398092 3398365 chrX 3398223 3398492 18 128 10.0 7.0 8.5 1.9 400 chrX 3398092 intron,intron CR44999 +,CG12535 - chrX 3398292 intron,intron CR44999 +,CG12535 - chrX 3398492 intron,intron CR44999 +,CG12535 - chrX_18_3395001 chrX_3395001 RAL-843 3482 chrX 3408939 3409015 chrX 3409065 3409132 21 125 5.5 6.0 5.8 3.1 193 chrX 3408939 intron,intron CR44999 +,CG12535 - chrX 3409036 intron,intron CR44999 +,CG12535 - chrX 3409132 intron,intron CR44999 +,CG12535 - chrX_21_3405001 chrX_3405001 RAL-843 3483 chrX 3410425 3410486 chrX 3410597 3410658 21 171 8.5 0.0 4.2 4.0 233 chrX 3410425 intron,intron CR44999 +,CG12535 - chrX 3410542 intron,intron CR44999 +,CG12535 - chrX 3410658 intron,intron CR44999 +,CG12535 - chrX_21_3410001 chrX_3410001 RAL-843 3484 chrX 3415012 3415039 chrX 3421247 3421274 3S18 9 6235 0.0 10.5 5.2 1.5 6262 chrX 3415012 intron,intron CR44999 +,CG12535 - chrX 3418143 intron,intron CR44999 +,CG12535 - chrX 3421274 intron,intron CR44999 +,CG12535 - chrX_9_3415001 chrX_3415001 RAL-843 3485 chrX 3493050 3493059 chrX 3502259 3502268 roo 4 9208 10.5 2.5 6.5 0.5 9218 chrX 3493050 intron,intron CR44999 +,Gas8 - chrX 3497659 intron,intron CR44999 +,Gas8 - chrX 3502268 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-843 3486 chrX 3493061 3493083 chrX 3502255 3502285 roo 4 9204 9.5 2.5 6.0 0.6 9224 chrX 3493061 intron,intron CR44999 +,Gas8 - chrX 3497673 intron,intron CR44999 +,Gas8 - chrX 3502285 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-843 3487 chrX 3582677 3582725 chrX 3582810 3582838 15 131 5.5 7.0 6.2 2.1 161 chrX 3582677 intron AstA-R1 + chrX 3582758 intron AstA-R1 + chrX 3582838 intron AstA-R1 + chrX_15_3580001 chrX_3580001 RAL-843 3488 chrX 3590557 3590616 chrX 3590703 3590762 11 145 6.0 9.5 7.8 1.2 205 chrX 3590557 intron AstA-R1 + chrX 3590660 intron AstA-R1 + chrX 3590762 intron AstA-R1 + chrX_11_3590001 chrX_3590001 RAL-843 3489 chrX 3597061 3597131 chrX 3597199 3597269 24 138 4.0 8.0 6.0 3.4 208 chrX 3597061 intron AstA-R1 + chrX 3597165 intron AstA-R1 + chrX 3597269 intron AstA-R1 + chrX_24_3595001 chrX_3595001 RAL-843 3490 chrX 3597507 3597572 chrX 3619725 3619792 roo 21 22218 12.0 5.5 8.8 2.1 22285 chrX 3597507 intron AstA-R1 + chrX 3608650 intron AstA-R1 + chrX 3619792 intron AstA-R1 + chrX_21_3605001 chrX_3605001 RAL-843 3491 chrX 3629803 3629864 chrX 3629938 3629993 26 135 5.5 0.0 2.8 6.8 190 chrX 3629803 intron AstA-R1 + chrX 3629898 intron AstA-R1 + chrX 3629993 intron AstA-R1 + chrX_26_3625001 chrX_3625001 RAL-843 3492 chrX 3630500 3630570 chrX 3630626 3630696 22 125 2.5 7.0 4.8 3.8 196 chrX 3630500 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630696 intron AstA-R1 + chrX_22_3630001 chrX_3630001 RAL-843 3493 chrX 3646403 3646420 chrX 3646539 3646556 9 134 5.0 10.5 7.8 1.0 153 chrX 3646403 intron AstA-R1 + chrX 3646480 intron AstA-R1 + chrX 3646556 intron AstA-R1 + chrX_9_3645001 chrX_3645001 RAL-843 3494 chrX 3662442 3662462 chrX 3662575 3662596 10 132 10.5 11.0 10.8 0.8 154 chrX 3662442 intron AstA-R1 + chrX 3662519 intron AstA-R1 + chrX 3662596 intron AstA-R1 + chrX_10_3660001 chrX_3660001 RAL-843 3495 chrX 3708299 3708377 chrX 3708434 3708442 12 129 9.0 0.5 4.8 2.1 143 chrX 3708299 intron Rala - chrX 3708370 intron Rala - chrX 3708442 intron Rala - chrX_12_3705001 chrX_3705001 RAL-843 3496 chrX 3726727 3726775 chrX 3730174 3730222 NOF 11 3446 7.0 11.5 9.2 1.1 3495 chrX 3726727 intron tlk + chrX 3728474 intron tlk + chrX 3730222 intron tlk + chrX_11_3725001 chrX_3725001 RAL-843 3497 chrX 3813053 3813065 chrX 3813377 3813416 7 344 0.0 9.0 4.5 1.3 363 chrX 3813053 intron ec + chrX 3813234 intron ec + chrX 3813416 intron ec + chrX_7_3810001 chrX_3810001 RAL-843 3498 chrX 3842307 3842353 chrX 3842570 3842616 pogo 11 263 9.5 6.5 8.0 1.2 309 chrX 3842307 intron ec + chrX 3842462 intron ec + chrX 3842616 intron ec + chrX_11_3840001 chrX_3840001 RAL-843 3499 chrX 3866054 3866103 chrX 3866182 3866231 28 128 10.0 4.5 7.2 3.4 177 chrX 3866054 intron yin - chrX 3866142 intron yin - chrX 3866231 intron yin - chrX_28_3865001 chrX_3865001 RAL-843 3500 chrX 3881235 3881299 chrX 3881424 3881468 29 188 8.0 8.0 8.0 3.2 233 chrX 3881235 intron VhaAC39-1 + chrX 3881352 intron VhaAC39-1 + chrX 3881468 exon VhaAC39-1 + chrX_29_3880001 chrX_3880001 RAL-843 3501 chrX 3899581 3899622 chrX 3899707 3899748 13 126 14.0 12.0 13.0 0.9 167 chrX 3899581 intron CG42541 - chrX 3899664 intron CG42541 - chrX 3899748 intron CG42541 - chrX_13_3895001 chrX_3895001 RAL-843 3502 chrX 3986832 3986884 chrX 3994515 3994567 412 17 7681 10.0 8.5 9.2 1.7 7735 chrX 3986832 intergenic not near genes chrX 3990700 intergenic not near genes chrX 3994567 intergenic not near genes chrX_17_3990001 chrX_3990001 RAL-843 3503 chrX 4029494 4029560 chrX 4029734 4029791 17 239 4.5 11.5 8.0 1.9 297 chrX 4029494 intergenic not near genes chrX 4029642 intergenic not near genes chrX 4029791 intergenic not near genes chrX_17_4025001 chrX_4025001 RAL-843 3504 chrX 4039030 4039076 chrX 4039157 4039170 7 115 17.5 10.5 14.0 0.5 140 chrX 4039030 intergenic not near genes chrX 4039100 intergenic not near genes chrX 4039170 intergenic not near genes chrX_7_4035001 chrX_4035001 RAL-843 3505 chrX 4157855 4157921 chrX 4164958 4165024 297 20 7102 3.5 8.0 5.8 2.9 7169 chrX 4157855 intron Fas2 - chrX 4161440 intron Fas2 - chrX 4165024 intron Fas2 - chrX_20_4160001 chrX_4160001 RAL-843 3506 chrX 4206182 4206233 chrX 4206341 4206397 11 164 6.5 9.5 8.0 1.2 215 chrX 4206182 intergenic Fas2 - chrX 4206290 intergenic Fas2 - chrX 4206397 intergenic Fas2 - chrX_11_4205001 chrX_4205001 RAL-843 3507 chrX 4209884 4209956 chrX 4210024 4210096 13 140 0.0 8.5 4.2 2.5 212 chrX 4209884 intergenic not near genes chrX 4209990 intergenic not near genes chrX 4210096 intergenic not near genes chrX_13_4205001 chrX_4205001 RAL-843 3508 chrX 4216291 4216338 chrX 4216420 4216467 16 129 10.0 7.0 8.5 1.7 176 chrX 4216291 intergenic not near genes chrX 4216379 intergenic CG15571 - chrX 4216467 intergenic CG15571 - chrX_16_4215001 chrX_4215001 RAL-843 3509 chrX 4343835 4343894 chrX 4344003 4344058 15 165 0.5 6.5 3.5 3.3 223 chrX 4343835 intron norpA + chrX 4343946 intron norpA + chrX 4344058 intron norpA + chrX_15_4340001 chrX_4340001 RAL-843 3510 chrX 4361407 4361429 chrX 4361536 4361546 4 126 9.5 1.5 5.5 0.6 139 chrX 4361407 intron norpA + chrX 4361476 intron norpA + chrX 4361546 intron norpA + chrX_4_4360001 chrX_4360001 RAL-843 3511 chrX 4382336 4382381 chrX 4382466 4382511 17 129 7.0 0.0 3.5 3.8 175 chrX 4382336 3` UTR CG12688 + chrX 4382424 3` UTR CG12688 + chrX 4382511 intergenic CG12688 + chrX_17_4380001 chrX_4380001 RAL-843 3512 chrX 4389379 4389380 chrX 12946234 12946235 4 8556855 32.5 21.5 27.0 0.1 8556856 chrX 4389379 intron CR32773 - chrX 8667807 intergenic not near genes chrX 12946235 3` UTR fne + chrX_4_8665001 chrX_8665001 RAL-843 3513 chrX 4396924 4397000 chrX 4397059 4397135 26 131 7.0 6.0 6.5 3.5 211 chrX 4396924 intron CR32773 - chrX 4397030 intron CR32773 - chrX 4397135 intron CR32773 - chrX_26_4395001 chrX_4395001 RAL-843 3514 chrX 4411421 4411428 chrX 4411552 4411559 5 131 19.5 11.5 15.5 0.3 138 chrX 4411421 intron CR32773 - chrX 4411490 intron CR32773 - chrX 4411559 intron CR32773 - chrX_5_4410001 chrX_4410001 RAL-843 3515 chrX 4411430 4411441 chrX 4411551 4411572 8 129 15.5 11.5 13.5 0.6 142 chrX 4411430 intron CR32773 - chrX 4411501 intron CR32773 - chrX 4411572 intron CR32773 - chrX_8_4410001 chrX_4410001 RAL-843 3516 chrX 4411444 4411469 chrX 4411546 4411595 15 124 9.0 11.5 10.2 1.3 151 chrX 4411444 intron CR32773 - chrX 4411520 intron CR32773 - chrX 4411595 intron CR32773 - chrX_15_4410001 chrX_4410001 RAL-843 3517 chrX 4436466 4436492 chrX 4436596 4436625 7 132 5.0 8.0 6.5 0.9 159 chrX 4436466 intron,intron CR32773 -,bi + chrX 4436546 intron,intron CR32773 -,bi + chrX 4436625 intron,intron CR32773 -,bi + chrX_7_4435001 chrX_4435001 RAL-843 3518 chrX 4525708 4525770 chrX 4525850 4525912 26 142 5.5 8.0 6.8 3.3 204 chrX 4525708 intron CR32773 - chrX 4525810 intron CR32773 - chrX 4525912 intron CR32773 - chrX_26_4525001 chrX_4525001 RAL-843 3519 chrX 4700351 4700414 chrX 4700744 4700807 jockey 25 391 6.5 8.0 7.2 3.0 456 chrX 4700351 3` UTR ctp + chrX 4700579 3` UTR ctp + chrX 4700807 3` UTR ctp + chrX_25_4700001 chrX_4700001 RAL-843 3520 chrX 4723538 4723585 chrX 4723659 4723690 5 119 10.0 14.0 12.0 0.4 152 chrX 4723538 exon Proc-R + chrX 4723614 intron Proc-R + chrX 4723690 intron Proc-R + chrX_5_4720001 chrX_4720001 RAL-843 3521 chrX 4763217 4763274 chrX 4763755 4763812 Stalker4 17 537 8.5 8.0 8.2 1.8 595 chrX 4763217 intergenic not near genes chrX 4763514 intergenic not near genes chrX 4763812 intergenic not near genes chrX_17_4760001 chrX_4760001 RAL-843 3522 chrX 4787037 4787092 chrX 4787174 4787240 12 147 6.0 1.0 3.5 2.7 203 chrX 4787037 intergenic not near genes chrX 4787138 intergenic not near genes chrX 4787240 intergenic not near genes chrX_12_4785001 chrX_4785001 RAL-843 3523 chrX 4788198 4788250 chrX 4788324 4788376 12 126 6.0 3.5 4.8 2.1 178 chrX 4788198 intergenic not near genes chrX 4788287 intergenic not near genes chrX 4788376 intergenic not near genes chrX_12_4785001 chrX_4785001 RAL-843 3524 chrX 4792339 4792404 chrX 4792822 4792822 jockey 19 477 5.5 8.5 7.0 2.4 483 chrX 4792339 intergenic not near genes chrX 4792580 intergenic not near genes chrX 4792822 intergenic not near genes chrX_19_4790001 chrX_4790001 RAL-843 3525 chrX 4827939 4827953 chrX 4835348 4835372 Stalker4 6 7416 17.5 8.5 13.0 0.4 7433 chrX 4827939 intergenic not near genes chrX 4831656 intergenic not near genes chrX 4835372 intergenic not near genes chrX_6_4830001 chrX_4830001 RAL-843 3526 chrX 4827962 4827995 chrX 4835342 4835392 Stalker4 22 7400 10.0 7.0 8.5 2.3 7430 chrX 4827962 intergenic not near genes chrX 4831677 intergenic not near genes chrX 4835392 intergenic not near genes chrX_22_4830001 chrX_4830001 RAL-843 3527 chrX 4844490 4844502 chrX 4844650 4844662 4 160 0.0 0.0 0.0 4.0 172 chrX 4844490 intron CG42594 + chrX 4844576 intron CG42594 + chrX 4844662 intron CG42594 + chrX_4_4840001 chrX_4840001 RAL-843 3528 chrX 4899570 4899636 chrX 4899689 4899776 17 132 3.5 0.0 1.8 6.1 206 chrX 4899570 intron CG42594 + chrX 4899673 intron CG42594 + chrX 4899776 intron CG42594 + chrX_17_4895001 chrX_4895001 RAL-843 3529 chrX 4931305 4931377 chrX 4931449 4931504 12 143 91.5 88.0 89.8 0.1 199 chrX 4931305 intron CG44774 - chrX 4931404 intron CG44774 - chrX 4931504 intron CG44774 - chrX_12_4930001 chrX_4930001 RAL-843 3530 chrX 4990005 4990073 chrX 4997269 4997337 roo 14 7264 4.0 9.5 6.8 1.8 7332 chrX 4990005 intron CR44833 - chrX 4993671 intron CR44833 - chrX 4997337 intron CR44833 - chrX_14_4990001 chrX_4990001 RAL-843 3531 chrX 5096233 5096298 chrX 5103847 5103913 springer 21 7613 8.0 6.0 7.0 2.6 7680 chrX 5096233 intron,intron CG15465 +,rg + chrX 5100073 intron,intron CG15465 +,rg + chrX 5103913 intron,intron CG15465 +,rg + chrX_21_5100001 chrX_5100001 RAL-843 3532 chrX 5134048 5134103 chrX 5134168 5134212 11 121 10.0 10.5 10.2 1.0 164 chrX 5134048 intron,intron CG15465 +,rg + chrX 5134130 intron,intron CG15465 +,rg + chrX 5134212 intron,intron CG15465 +,rg + chrX_11_5130001 chrX_5130001 RAL-843 3533 chrX 5220340 5220366 chrX 5220631 5220657 10 291 12.5 7.5 10.0 0.9 317 chrX 5220340 intron,intron CG15465 +,rg + chrX 5220498 intron,intron CG15465 +,rg + chrX 5220657 intron,intron CG15465 +,rg + chrX_10_5220001 chrX_5220001 RAL-843 3534 chrX 5338660 5338735 chrX 5339963 5339989 jockey 13 1290 6.0 4.0 5.0 2.2 1329 chrX 5338660 intergenic not near genes chrX 5339324 intergenic not near genes chrX 5339989 intergenic SK + chrX_13_5335001 chrX_5335001 RAL-843 3535 chrX 5362793 5362799 chrX 5362961 5362967 4 168 9.0 15.0 12.0 0.3 174 chrX 5362793 intron SK + chrX 5362880 intron SK + chrX 5362967 intron SK + chrX_4_5360001 chrX_5360001 RAL-843 3536 chrX 5441943 5442013 chrX 5442101 5442106 14 144 4.0 9.0 6.5 1.9 163 chrX 5441943 intergenic not near genes chrX 5442024 intergenic not near genes chrX 5442106 intergenic not near genes chrX_14_5440001 chrX_5440001 RAL-843 3537 chrX 5450162 5450194 chrX 5450587 5450610 13 440 9.5 5.5 7.5 1.5 448 chrX 5450162 intron SPR + chrX 5450386 intron SPR + chrX 5450610 intron SPR + chrX_13_5450001 chrX_5450001 RAL-843 3538 chrX 5457448 5457523 chrX 5457585 5457653 32 137 8.5 6.5 7.5 3.8 205 chrX 5457448 intron SPR + chrX 5457550 intron SPR + chrX 5457653 intron SPR + chrX_32_5455001 chrX_5455001 RAL-843 3539 chrX 5473537 5473618 chrX 5473663 5473689 25 120 5.0 4.0 4.5 4.5 152 chrX 5473537 intron SPR + chrX 5473613 intron SPR + chrX 5473689 intron SPR + chrX_25_5470001 chrX_5470001 RAL-843 3540 chrX 5481071 5481092 chrX 5485081 5485102 I-element 14 4010 0.0 10.5 5.2 2.3 4031 chrX 5481071 intron SPR + chrX 5483086 intron SPR + chrX 5485102 intron SPR + chrX_14_5480001 chrX_5480001 RAL-843 3541 chrX 5486767 5486794 chrX 5486889 5486914 8 127 16.0 15.0 15.5 0.5 147 chrX 5486767 intron SPR + chrX 5486840 intron SPR + chrX 5486914 intron SPR + chrX_8_5485001 chrX_5485001 RAL-843 3542 chrX 5501446 5501509 chrX 5501586 5501649 20 139 9.0 2.0 5.5 3.1 203 chrX 5501446 intergenic CG4151 +,CG32762 - chrX 5501548 5` UTR CG4151 + chrX 5501649 5` UTR CG4151 + chrX_20_5500001 chrX_5500001 RAL-843 3543 chrX 5524795 5524829 chrX 5528704 5528738 412 13 3908 8.0 0.0 4.0 2.6 3943 chrX 5524795 intergenic snoRNA:Psi28S-3342 - chrX 5526766 intergenic not near genes chrX 5528738 intergenic Vsx2 - chrX_13_5525001 chrX_5525001 RAL-843 3544 chrX 5564110 5564141 chrX 5564255 5564273 10 141 18.0 17.5 17.8 0.5 163 chrX 5564110 intergenic not near genes chrX 5564192 intergenic not near genes chrX 5564273 intergenic not near genes chrX_10_5560001 chrX_5560001 RAL-843 3545 chrX 5727382 5727413 chrX 5732163 5732192 Doc 9 4786 7.0 8.0 7.5 1.1 4810 chrX 5727382 intron CG32758 - chrX 5729787 intron CG32758 - chrX 5732192 intron CG32758 - chrX_9_5725001 chrX_5725001 RAL-843 3546 chrX 5792560 5792733 chrX 5792708 5792819 7 150 4.5 2.5 3.5 1.6 259 chrX 5792560 exon CG12239 + chrX 5792690 exon CG12239 + chrX 5792819 exon CG12239 + chrX_7_5790001 chrX_5790001 RAL-843 3547 chrX 5798857 5798870 chrX 5799039 5799082 8 208 0.5 9.0 4.8 1.4 225 chrX 5798857 intergenic not near genes chrX 5798970 intergenic not near genes chrX 5799082 intergenic not near genes chrX_8_5795001 chrX_5795001 RAL-843 3548 chrX 5798873 5798888 chrX 5799026 5799096 9 202 0.5 7.0 3.8 1.9 223 chrX 5798873 intergenic not near genes chrX 5798984 intergenic not near genes chrX 5799096 intergenic not near genes chrX_9_5795001 chrX_5795001 RAL-843 3549 chrX 5883773 5883837 chrX 5884054 5884128 pogo 22 287 5.5 7.0 6.2 3.1 355 chrX 5883773 intron CR45668 - chrX 5883950 intron CR45668 - chrX 5884128 intron CR45668 - chrX_22_5880001 chrX_5880001 RAL-843 3550 chrX 5884118 5884187 chrX 5884409 5884478 pogo 17 291 8.0 8.0 8.0 1.9 360 chrX 5884118 intron CR45668 - chrX 5884298 intron CR45668 - chrX 5884478 intron CR45668 - chrX_17_5880001 chrX_5880001 RAL-843 3551 chrX 5917457 5917507 chrX 5917587 5917625 10 128 8.5 6.0 7.2 1.2 168 chrX 5917457 5` UTR CG3726 + chrX 5917541 5` UTR CG3726 + chrX 5917625 5` UTR CG3726 + chrX_10_5915001 chrX_5915001 RAL-843 3552 chrX 5917512 5917519 chrX 5917582 5917649 5 110 7.5 5.0 6.2 0.7 137 chrX 5917512 5` UTR CG3726 + chrX 5917580 5` UTR CG3726 + chrX 5917649 intron CG3726 + chrX_5_5915001 chrX_5915001 RAL-843 3553 chrX 5953738 5953770 chrX 5953913 5953945 8 168 12.0 19.5 15.8 0.5 207 chrX 5953738 exon CG6048 + chrX 5953842 exon CG6048 + chrX 5953945 exon CG6048 + chrX_8_5950001 chrX_5950001 RAL-843 3554 chrX 5954957 5955035 chrX 5955243 5955317 25 283 0.0 5.5 2.8 6.6 360 chrX 5954957 intergenic not near genes chrX 5955137 intergenic CG6067 + chrX 5955317 intergenic CG6067 + chrX_25_5955001 chrX_5955001 RAL-843 3555 chrX 6003281 6003312 chrX 6003398 6003443 18 128 4.0 15.0 9.5 1.7 162 chrX 6003281 intron CR44498 + chrX 6003362 intron CR44498 + chrX 6003443 intron CR44498 + chrX_18_6000001 chrX_6000001 RAL-843 3556 chrX 6118658 6118726 chrX 6118790 6118856 22 132 4.5 9.5 7.0 2.8 198 chrX 6118658 intron Ca-alpha1T - chrX 6118757 intron Ca-alpha1T - chrX 6118856 intron Ca-alpha1T - chrX_22_6115001 chrX_6115001 RAL-843 3557 chrX 6171543 6171612 chrX 6179026 6179089 Quasimodo 12 7481 7.0 7.0 7.0 1.5 7546 chrX 6171543 intron Ca-alpha1T - chrX 6175316 intron Ca-alpha1T - chrX 6179089 intron Ca-alpha1T - chrX_12_6175001 chrX_6175001 RAL-843 3558 chrX 6215482 6215502 chrX 6215613 6215633 11 131 21.5 13.0 17.2 0.6 151 chrX 6215482 intergenic not near genes chrX 6215558 intergenic not near genes chrX 6215633 intergenic not near genes chrX_11_6215001 chrX_6215001 RAL-843 3559 chrX 6215504 6215522 chrX 6215609 6215644 11 124 16.5 12.5 14.5 0.7 140 chrX 6215504 intergenic not near genes chrX 6215574 intergenic not near genes chrX 6215644 intergenic not near genes chrX_11_6215001 chrX_6215001 RAL-843 3560 chrX 6312156 6312221 chrX 6312281 6312310 35 131 7.0 5.0 6.0 5.0 154 chrX 6312156 intron CG15894 + chrX 6312233 intron CG15894 + chrX 6312310 intron CG15894 + chrX_35_6310001 chrX_6310001 RAL-843 3561 chrX 6335217 6335239 chrX 6337724 6337799 Tirant 8 2552 0.0 6.5 3.2 1.9 2582 chrX 6335217 intergenic not near genes chrX 6336508 intergenic not near genes chrX 6337799 5` UTR CG3842 + chrX_8_6335001 chrX_6335001 RAL-843 3562 chrX 6392833 6392894 chrX 6397642 6397709 Doc 32 4812 10.5 6.5 8.5 3.4 4876 chrX 6392833 intergenic not near genes chrX 6395271 intergenic not near genes chrX 6397709 intergenic not near genes chrX_32_6395001 chrX_6395001 RAL-843 3563 chrX 6429964 6429983 chrX 6435481 6435484 Rt1c 5 5509 14.5 15.5 15.0 0.3 5520 chrX 6429964 intron CG42340 - chrX 6432724 intron CG42340 - chrX 6435484 intron CG42340 - chrX_5_6430001 chrX_6430001 RAL-843 3564 chrX 6429987 6429993 chrX 6435480 6435510 Rt1c 9 5510 13.0 15.0 14.0 0.6 5523 chrX 6429987 intron CG42340 - chrX 6432748 intron CG42340 - chrX 6435510 intron CG42340 - chrX_9_6430001 chrX_6430001 RAL-843 3565 chrX 6487935 6487982 chrX 6488067 6488114 24 131 13.0 13.0 13.0 1.7 179 chrX 6487935 intron CG42340 - chrX 6488024 intron CG42340 - chrX 6488114 intron CG42340 - chrX_24_6485001 chrX_6485001 RAL-843 3566 chrX 6562781 6562790 chrX 6571313 6571322 Tirant 4 8532 23.0 15.5 19.2 0.2 8541 chrX 6562781 intron CG34417 + chrX 6567052 intron CG34417 + chrX 6571322 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-843 3567 chrX 6562791 6562845 chrX 6571303 6571377 Tirant 26 8524 10.5 14.0 12.2 2.0 8586 chrX 6562791 intron CG34417 + chrX 6567084 intron CG34417 + chrX 6571377 intron CG34417 + chrX_26_6565001 chrX_6565001 RAL-843 3568 chrX 6591804 6591851 chrX 6591939 6591986 20 135 8.0 0.0 4.0 4.0 182 chrX 6591804 intron Pat1 + chrX 6591895 intron Pat1 + chrX 6591986 intron Pat1 + chrX_20_6590001 chrX_6590001 RAL-843 3569 chrX 6733414 6733660 chrX 6733541 6733770 4 125 11.0 16.0 13.5 0.3 356 chrX 6733414 intron,intron CG3168 -,CR43461 + chrX 6733592 intron,intron CG3168 -,CR43461 + chrX 6733770 intron,intron CG3168 -,CR43461 + chrX_4_6730001 chrX_6730001 RAL-843 3570 chrX 6737473 6737476 chrX 6737606 6737609 5 133 19.0 8.5 13.8 0.3 136 chrX 6737473 intron CG3168 - chrX 6737541 intron CG3168 - chrX 6737609 intron CG3168 - chrX_5_6735001 chrX_6735001 RAL-843 3571 chrX 6737484 6737546 chrX 6737605 6737677 13 121 7.5 8.5 8.0 1.4 193 chrX 6737484 intron CG3168 - chrX 6737580 intron CG3168 - chrX 6737677 intron CG3168 - chrX_13_6735001 chrX_6735001 RAL-843 3572 chrX 6792041 6792088 chrX 6792182 6792229 12 141 5.5 8.5 7.0 1.5 188 chrX 6792041 intron C3G - chrX 6792135 intron C3G - chrX 6792229 intron C3G - chrX_12_6790001 chrX_6790001 RAL-843 3573 chrX 6814243 6814303 chrX 6814364 6814429 14 124 5.0 2.0 3.5 3.1 186 chrX 6814243 exon iav + chrX 6814336 intron iav + chrX 6814429 intron iav + chrX_14_6810001 chrX_6810001 RAL-843 3574 chrX 6896175 6896210 chrX 6896306 6896341 7 131 13.0 12.0 12.5 0.5 166 chrX 6896175 intergenic not near genes chrX 6896258 intergenic not near genes chrX 6896341 intergenic not near genes chrX_7_6895001 chrX_6895001 RAL-843 3575 chrX 6896213 6896228 chrX 6896301 6896359 9 126 9.0 10.5 9.8 0.8 146 chrX 6896213 intergenic not near genes chrX 6896286 intergenic not near genes chrX 6896359 intergenic not near genes chrX_9_6895001 chrX_6895001 RAL-843 3576 chrX 6897274 6897293 chrX 6897624 6897643 8 350 0.5 6.0 3.2 1.9 369 chrX 6897274 intergenic not near genes chrX 6897458 intergenic not near genes chrX 6897643 intergenic not near genes chrX_8_6895001 chrX_6895001 RAL-843 3577 chrX 6897638 6897709 chrX 6897798 6897869 25 159 3.5 6.5 5.0 4.2 231 chrX 6897638 intergenic not near genes chrX 6897754 intergenic not near genes chrX 6897869 intergenic not near genes chrX_25_6895001 chrX_6895001 RAL-843 3578 chrX 6901347 6901370 chrX 6901473 6901496 7 123 7.0 8.0 7.5 0.8 149 chrX 6901347 intergenic not near genes chrX 6901422 intergenic not near genes chrX 6901496 intergenic not near genes chrX_7_6900001 chrX_6900001 RAL-843 3579 chrX 6934772 6934840 chrX 6936070 6936087 11 1258 57.0 43.0 50.0 0.2 1315 chrX 6934772 intron CG14431 + chrX 6935430 intron CG14431 + chrX 6936087 intron CG14431 + chrX_11_6935001 chrX_6935001 RAL-843 3580 chrX 6989472 6989531 chrX 6989592 6989663 18 134 6.0 11.0 8.5 1.9 191 chrX 6989472 intron ogre - chrX 6989568 intron ogre - chrX 6989663 intron ogre - chrX_18_6985001 chrX_6985001 RAL-843 3581 chrX 7023559 7023625 chrX 7030999 7031064 Tabor 24 7437 6.5 10.5 8.5 2.5 7505 chrX 7023559 intron CG12541 - chrX 7027312 intron CG12541 - chrX 7031064 intron CG12541 - chrX_24_7025001 chrX_7025001 RAL-843 3582 chrX 7067882 7067915 chrX 13592492 13592493 4 6524594 12.0 5.5 8.8 0.4 6524611 chrX 7067882 intergenic not near genes chrX 10330188 3` UTR CG15306 - chrX 13592493 3` UTR Tango13 + chrX_4_10330001 chrX_10330001 RAL-843 3583 chrX 7113258 7113332 chrX 7113395 7113438 30 132 4.5 9.5 7.0 3.8 180 chrX 7113258 intergenic not near genes chrX 7113348 intergenic not near genes chrX 7113438 intergenic not near genes chrX_30_7110001 chrX_7110001 RAL-843 3584 chrX 7125221 7125268 chrX 7134430 7134477 roo 22 9209 0.0 10.5 5.2 3.5 9256 chrX 7125221 intergenic not near genes chrX 7129849 intergenic not near genes chrX 7134477 intergenic not near genes chrX_22_7125001 chrX_7125001 RAL-843 3585 chrX 7480780 7480810 chrX 7482344 7482350 jockey 10 1558 7.0 16.0 11.5 0.8 1570 chrX 7480780 intergenic not near genes chrX 7481565 intergenic not near genes chrX 7482350 intergenic not near genes chrX_10_7480001 chrX_7480001 RAL-843 3586 chrX 7702448 7702520 chrX 7702602 7702652 19 146 0.0 9.0 4.5 3.5 204 chrX 7702448 intron CHES-1-like - chrX 7702550 intron CHES-1-like - chrX 7702652 intron CHES-1-like - chrX_19_7700001 chrX_7700001 RAL-843 3587 chrX 7702867 7702924 chrX 7703356 7703413 jockey 25 487 10.0 10.0 10.0 2.3 546 chrX 7702867 intron CHES-1-like - chrX 7703140 intron CHES-1-like - chrX 7703413 intron CHES-1-like - chrX_25_7700001 chrX_7700001 RAL-843 3588 chrX 7719089 7719118 chrX 7719222 7719232 6 128 15.5 0.0 7.8 0.7 143 chrX 7719089 intergenic not near genes chrX 7719160 intergenic not near genes chrX 7719232 intergenic not near genes chrX_6_7715001 chrX_7715001 RAL-843 3589 chrX 7832391 7832461 chrX 7832530 7832600 24 136 6.0 6.5 6.2 3.3 209 chrX 7832391 intron CG1402 + chrX 7832496 intron CG1402 + chrX 7832600 intron CG1402 + chrX_24_7830001 chrX_7830001 RAL-843 3590 chrX 7836622 7836628 chrX 7836755 7836761 4 133 6.5 0.0 3.2 1.0 139 chrX 7836622 intron CG1402 + chrX 7836692 intron CG1402 + chrX 7836761 intron CG1402 + chrX_4_7835001 chrX_7835001 RAL-843 3591 chrX 7845696 7845724 chrX 7847232 7847265 hopper2 6 1540 11.0 6.5 8.8 0.6 1569 chrX 7845696 intergenic not near genes chrX 7846480 intergenic not near genes chrX 7847265 intergenic not near genes chrX_6_7845001 chrX_7845001 RAL-843 3592 chrX 7845725 7845754 chrX 7847220 7847295 hopper2 7 1534 6.0 5.5 5.8 1.0 1570 chrX 7845725 intergenic not near genes chrX 7846510 intergenic not near genes chrX 7847295 intergenic not near genes chrX_7_7845001 chrX_7845001 RAL-843 3593 chrX 7881807 7881877 chrX 7881941 7882009 13 133 4.5 7.0 5.8 1.9 202 chrX 7881807 intergenic Ir7e -,Ir7f - chrX 7881908 intergenic Ir7f -,Ir7e - chrX 7882009 3` UTR Ir7f - chrX_13_7880001 chrX_7880001 RAL-843 3594 chrX 7960828 7960896 chrX 7960967 7961035 33 139 10.0 9.5 9.8 3.1 207 chrX 7960828 intron,5` UTR sws -,CR45620 + chrX 7960932 intron sws - chrX 7961035 intron sws - chrX_33_7960001 chrX_7960001 RAL-843 3595 chrX 7968470 7968526 chrX 7968648 7968704 9 178 4.0 5.5 4.8 1.6 234 chrX 7968470 intron sn + chrX 7968587 intron sn + chrX 7968704 intron sn + chrX_9_7965001 chrX_7965001 RAL-843 3596 chrX 8031401 8031451 chrX 8035760 8035810 Juan 22 4359 7.5 13.5 10.5 1.9 4409 chrX 8031401 intergenic not near genes chrX 8033606 intergenic not near genes chrX 8035810 3` UTR CG2233 - chrX_22_8030001 chrX_8030001 RAL-843 3597 chrX 8085527 8085598 chrX 8085663 8085734 29 136 8.0 5.0 6.5 3.9 207 chrX 8085527 intron,5` UTR CG2256 -,CR45535 + chrX 8085630 intron,5` UTR CG2256 -,CR45535 + chrX 8085734 intron,5` UTR CG2256 -,CR45535 + chrX_29_8085001 chrX_8085001 RAL-843 3598 chrX 8092250 8092316 chrX 8092380 8092451 27 134 3.5 6.0 4.8 4.7 201 chrX 8092250 intron Ubc-E2H - chrX 8092350 intron Ubc-E2H - chrX 8092451 intron Ubc-E2H - chrX_27_8090001 chrX_8090001 RAL-843 3599 chrX 8202830 8202843 chrX 8202962 8202975 5 132 5.5 6.5 6.0 0.7 145 chrX 8202830 intron sdt + chrX 8202902 intron sdt + chrX 8202975 intron sdt + chrX_5_8200001 chrX_8200001 RAL-843 3600 chrX 8214362 8214388 chrX 8214504 8214530 14 141 12.0 9.0 10.5 1.2 168 chrX 8214362 intron sdt + chrX 8214446 intron sdt + chrX 8214530 intron sdt + chrX_14_8210001 chrX_8210001 RAL-843 3601 chrX 8214389 8214427 chrX 8214502 8214559 20 139 7.0 8.5 7.8 2.3 170 chrX 8214389 intron sdt + chrX 8214474 intron sdt + chrX 8214559 intron sdt + chrX_20_8210001 chrX_8210001 RAL-843 3602 chrX 8371112 8371174 chrX 8371316 8371362 9 198 4.0 2.0 3.0 2.2 250 chrX 8371112 intergenic not near genes chrX 8371237 intergenic not near genes chrX 8371362 intergenic not near genes chrX_9_8370001 chrX_8370001 RAL-843 3603 chrX 8377868 8377897 chrX 8377995 8378024 18 127 10.5 4.0 7.2 2.2 156 chrX 8377868 intergenic not near genes chrX 8377946 intergenic not near genes chrX 8378024 intergenic not near genes chrX_18_8375001 chrX_8375001 RAL-843 3604 chrX 8392536 8392543 chrX 8392663 8392670 7 126 7.0 14.5 10.8 0.6 134 chrX 8392536 intergenic not near genes chrX 8392603 intergenic not near genes chrX 8392670 intergenic not near genes chrX_7_8390001 chrX_8390001 RAL-843 3605 chrX 8392548 8392569 chrX 8392656 8392696 11 123 6.0 12.5 9.2 1.1 148 chrX 8392548 intergenic not near genes chrX 8392622 intergenic not near genes chrX 8392696 intergenic not near genes chrX_11_8390001 chrX_8390001 RAL-843 3606 chrX 8392574 8392585 chrX 8392651 8392696 4 110 5.5 12.0 8.8 0.4 122 chrX 8392574 intergenic not near genes chrX 8392635 intergenic not near genes chrX 8392696 intergenic not near genes chrX_4_8390001 chrX_8390001 RAL-843 3607 chrX 8421461 8421484 chrX 8421603 8421626 10 142 7.0 24.5 15.8 0.6 165 chrX 8421461 intron Trf2 + chrX 8421544 intron Trf2 + chrX 8421626 intron Trf2 + chrX_10_8420001 chrX_8420001 RAL-843 3608 chrX 8440740 8440757 chrX 8440876 8440880 10 134 10.0 9.5 9.8 0.9 140 chrX 8440740 exon CG1440 + chrX 8440810 3` UTR CG1440 + chrX 8440880 3` UTR CG1440 + chrX_10_8440001 chrX_8440001 RAL-843 3609 chrX 8505983 8506049 chrX 8506111 8506166 25 127 5.0 8.5 6.8 3.2 183 chrX 8505983 intron CG33181 + chrX 8506074 intron CG33181 + chrX 8506166 intron CG33181 + chrX_25_8505001 chrX_8505001 RAL-843 3610 chrX 8670162 8670177 chrX 8670292 8670307 8 130 8.0 0.0 4.0 1.6 145 chrX 8670162 intergenic not near genes chrX 8670234 intergenic not near genes chrX 8670307 intergenic not near genes chrX_8_8670001 chrX_8670001 RAL-843 3611 chrX 8730448 8730458 chrX 8730574 8730584 5 126 1.0 18.0 9.5 0.5 136 chrX 8730448 intergenic not near genes chrX 8730516 intergenic not near genes chrX 8730584 intergenic not near genes chrX_5_8730001 chrX_8730001 RAL-843 3612 chrX 8772205 8772243 chrX 8772333 8772358 12 123 14.0 15.5 14.8 0.8 153 chrX 8772205 intron Lim1 - chrX 8772282 intron Lim1 - chrX 8772358 intron Lim1 - chrX_12_8770001 chrX_8770001 RAL-843 3613 chrX 8832226 8832278 chrX 8832352 8832404 12 126 2.0 4.5 3.2 2.9 178 chrX 8832226 intergenic not near genes chrX 8832315 intergenic not near genes chrX 8832404 intergenic not near genes chrX_12_8830001 chrX_8830001 RAL-843 3614 chrX 8877740 8877811 chrX 8877914 8877985 19 174 5.0 6.0 5.5 2.9 245 chrX 8877740 intron Moe - chrX 8877862 intron Moe - chrX 8877985 intron Moe - chrX_19_8875001 chrX_8875001 RAL-843 3615 chrX 8888590 8888655 chrX 8888717 8888782 21 126 8.0 6.5 7.2 2.6 192 chrX 8888590 intron Moe - chrX 8888686 intron Moe - chrX 8888782 intron Moe - chrX_21_8885001 chrX_8885001 RAL-843 3616 chrX 8894949 8895002 chrX 8895084 8895135 16 135 9.5 6.0 7.8 1.8 186 chrX 8894949 intron Moe - chrX 8895042 intron Moe - chrX 8895135 intron Moe - chrX_16_8895001 chrX_8895001 RAL-843 3617 chrX 8913486 8913498 chrX 8913645 8913657 5 159 7.5 3.5 5.5 0.8 171 chrX 8913486 intron rdgA + chrX 8913572 intron rdgA + chrX 8913657 intron rdgA + chrX_5_8910001 chrX_8910001 RAL-843 3618 chrX 8913502 8913541 chrX 8913641 8913700 11 152 4.5 3.0 3.8 2.3 198 chrX 8913502 intron rdgA + chrX 8913601 intron rdgA + chrX 8913700 intron rdgA + chrX_11_8910001 chrX_8910001 RAL-843 3619 chrX 8915236 8915268 chrX 8915358 8915404 9 134 9.5 10.5 10.0 0.8 168 chrX 8915236 intron rdgA + chrX 8915320 intron rdgA + chrX 8915404 intron rdgA + chrX_9_8915001 chrX_8915001 RAL-843 3620 chrX 8922292 8922352 chrX 8922775 8922836 jockey 31 480 11.0 13.5 12.2 2.3 544 chrX 8922292 intron rdgA + chrX 8922564 intron rdgA + chrX 8922836 intron rdgA + chrX_31_8920001 chrX_8920001 RAL-843 3621 chrX 8927542 8927608 chrX 8929862 8929928 NOF 23 2319 5.5 9.5 7.5 2.7 2386 chrX 8927542 intron rdgA + chrX 8928735 intron rdgA + chrX 8929928 intron rdgA + chrX_23_8925001 chrX_8925001 RAL-843 3622 chrX 8934794 8934856 chrX 8934922 8934984 21 127 5.5 5.0 5.2 3.4 190 chrX 8934794 intron rdgA + chrX 8934889 intron rdgA + chrX 8934984 intron rdgA + chrX_21_8930001 chrX_8930001 RAL-843 3623 chrX 8948725 8948784 chrX 8956285 8956344 roo 17 7560 0.0 7.5 3.8 3.5 7619 chrX 8948725 intron rdgA + chrX 8952534 intron rdgA + chrX 8956344 intron rdgA + chrX_17_8950001 chrX_8950001 RAL-843 3624 chrX 8968817 8968852 chrX 8968946 8968981 13 125 16.0 18.0 17.0 0.7 164 chrX 8968817 intron rdgA + chrX 8968899 intron rdgA + chrX 8968981 intron rdgA + chrX_13_8965001 chrX_8965001 RAL-843 3625 chrX 9062683 9062695 chrX 9062811 9062823 7 127 1.0 0.0 0.5 4.7 140 chrX 9062683 intron CG15365 - chrX 9062753 intron CG15365 - chrX 9062823 intron CG15365 - chrX_7_9060001 chrX_9060001 RAL-843 3626 chrX 9062698 9062730 chrX 9062806 9062858 7 123 1.0 0.0 0.5 4.7 160 chrX 9062698 intron CG15365 - chrX 9062778 intron CG15365 - chrX 9062858 intron CG15365 - chrX_7_9060001 chrX_9060001 RAL-843 3627 chrX 9129433 9129506 chrX 9129569 9129642 37 135 9.5 8.5 9.0 3.7 209 chrX 9129433 intron fend - chrX 9129538 intron fend - chrX 9129642 intron fend - chrX_37_9125001 chrX_9125001 RAL-843 3628 chrX 9147090 9147105 chrX 9147223 9147228 6 129 17.0 2.5 9.8 0.6 138 chrX 9147090 exon CG7065 + chrX 9147159 exon CG7065 + chrX 9147228 exon CG7065 + chrX_6_9145001 chrX_9145001 RAL-843 3629 chrX 9147108 9147139 chrX 9147219 9147236 6 113 10.5 2.5 6.5 0.8 128 chrX 9147108 exon CG7065 + chrX 9147172 exon CG7065 + chrX 9147236 exon CG7065 + chrX_6_9145001 chrX_9145001 RAL-843 3630 chrX 9391525 9391598 chrX 9391721 9391794 25 196 6.0 5.0 5.5 3.8 269 chrX 9391525 intron mgl - chrX 9391660 intron mgl - chrX 9391794 intron mgl - chrX_25_9390001 chrX_9390001 RAL-843 3631 chrX 9430204 9430223 chrX 9430644 9430671 7 446 10.5 7.5 9.0 0.7 467 chrX 9430204 intron mgl - chrX 9430438 intron mgl - chrX 9430671 intron mgl - chrX_7_9430001 chrX_9430001 RAL-843 3632 chrX 9465729 9465790 chrX 9466123 9466185 24 394 10.0 10.5 10.2 2.1 456 chrX 9465729 intron mgl - chrX 9465957 intron mgl - chrX 9466185 intron mgl - chrX_24_9465001 chrX_9465001 RAL-843 3633 chrX 9496013 9496041 chrX 9496111 9496166 6 114 6.0 3.5 4.8 1.0 153 chrX 9496013 intron mgl - chrX 9496090 intron mgl - chrX 9496166 intron mgl - chrX_6_9495001 chrX_9495001 RAL-843 3634 chrX 9503211 9503211 chrX 22383088 22383377 19 12880119 22.5 204.5 113.5 0.2 12880166 chrX 9503211 3` UTR CG32700 - chrX 15943294 intron CG8924 + chrX 22383377 intergenic not near genes chrX_19_15940001 chrX_15940001 RAL-843 3635 chrX 9508093 9508129 chrX 9509661 9509697 jockey 16 1567 13.0 8.5 10.8 1.4 1604 chrX 9508093 intron CG32700 - chrX 9508895 intron CG32700 - chrX 9509697 intron CG32700 - chrX_16_9505001 chrX_9505001 RAL-843 3636 chrX 9508130 9508158 chrX 9509657 9509726 jockey 11 1561 8.5 8.5 8.5 1.2 1596 chrX 9508130 intron CG32700 - chrX 9508928 intron CG32700 - chrX 9509726 intron CG32700 - chrX_11_9505001 chrX_9505001 RAL-843 3637 chrX 9575753 9575768 chrX 9576127 9576141 mdg3 6 374 29.0 9.0 19.0 0.3 388 chrX 9575753 intron,exon CG32699 -,CG42395 - chrX 9575947 intron,intron CG32699 -,CG42395 - chrX 9576141 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-843 3638 chrX 9575771 9575812 chrX 9576117 9576186 mdg3 26 367 15.0 6.5 10.8 2.2 415 chrX 9575771 intron,exon CG32699 -,CG42395 - chrX 9575978 intron,intron CG32699 -,CG42395 - chrX 9576186 intron,5` UTR CG32699 -,CG42395 - chrX_26_9575001 chrX_9575001 RAL-843 3639 chrX 9599125 9599198 chrX 9599253 9599326 39 120 8.5 6.5 7.5 4.6 201 chrX 9599125 intergenic not near genes chrX 9599226 intergenic not near genes chrX 9599326 intergenic not near genes chrX_39_9595001 chrX_9595001 RAL-843 3640 chrX 9616963 9617029 chrX 9617091 9617091 5 99 5.0 0.0 2.5 1.4 128 chrX 9616963 intron CG42797 + chrX 9617027 intron CG42797 + chrX 9617091 intron CG42797 + chrX_5_9615001 chrX_9615001 RAL-843 3641 chrX 9631988 9632072 chrX 9632208 9632314 6 230 2.5 0.0 1.2 2.7 326 chrX 9631988 intron l(1)G0232 - chrX 9632151 intron l(1)G0232 - chrX 9632314 intron l(1)G0232 - chrX_6_9630001 chrX_9630001 RAL-843 3642 chrX 9732333 9732380 chrX 9732459 9732512 9 127 1.5 3.5 2.5 2.6 179 chrX 9732333 intron Sp1 + chrX 9732422 intron Sp1 + chrX 9732512 intron Sp1 + chrX_9_9730001 chrX_9730001 RAL-843 3643 chrX 9758009 9758046 chrX 9758139 9758181 10 134 11.0 0.0 5.5 1.5 172 chrX 9758009 intergenic not near genes chrX 9758095 intergenic not near genes chrX 9758181 intergenic not near genes chrX_10_9755001 chrX_9755001 RAL-843 3644 chrX 9791814 9791895 chrX 9791963 9792033 21 146 4.5 5.5 5.0 3.5 219 chrX 9791814 intron CG32698 + chrX 9791924 intron CG32698 + chrX 9792033 intron CG32698 + chrX_21_9790001 chrX_9790001 RAL-843 3645 chrX 9839301 9839367 chrX 9839434 9839487 15 132 1.0 8.0 4.5 2.7 186 chrX 9839301 intron CG32698 + chrX 9839394 intron CG32698 + chrX 9839487 intron CG32698 + chrX_15_9835001 chrX_9835001 RAL-843 3646 chrX 9988474 9988519 chrX 9988628 9988673 11 154 9.0 6.5 7.8 1.2 199 chrX 9988474 intergenic not near genes chrX 9988574 intergenic not near genes chrX 9988673 intergenic not near genes chrX_11_9985001 chrX_9985001 RAL-843 3647 chrX 10027122 10027187 chrX 10027252 10027317 25 129 10.5 8.5 9.5 2.4 195 chrX 10027122 intron Cht6 + chrX 10027220 intron Cht6 + chrX 10027317 intron Cht6 + chrX_25_10025001 chrX_10025001 RAL-843 3648 chrX 10077181 10077213 chrX 10077312 10077344 6 129 15.5 15.0 15.2 0.4 163 chrX 10077181 intron ZAP3 - chrX 10077262 intron ZAP3 - chrX 10077344 intron ZAP3 - chrX_6_10075001 chrX_10075001 RAL-843 3649 chrX 10131104 10131168 chrX 10131248 10131312 25 143 5.0 6.5 5.8 3.7 208 chrX 10131104 intron,intron RhoU +,CR44894 - chrX 10131208 intron,intron RhoU +,CR44894 - chrX 10131312 intron,intron RhoU +,CR44894 - chrX_25_10130001 chrX_10130001 RAL-843 3650 chrX 10138174 10138243 chrX 10145728 10145797 412 31 7553 6.5 7.5 7.0 3.9 7623 chrX 10138174 intron,intron RhoU +,CR44894 - chrX 10141986 intron,intron RhoU +,CR44894 - chrX 10145797 intron,intron RhoU +,CR44894 - chrX_31_10140001 chrX_10140001 RAL-843 3651 chrX 10216794 10216849 chrX 10216925 10216980 19 129 13.5 11.5 12.5 1.4 186 chrX 10216794 3` UTR l(1)G0230 + chrX 10216887 3` UTR l(1)G0230 + chrX 10216980 3` UTR l(1)G0230 + chrX_19_10215001 chrX_10215001 RAL-843 3652 chrX 10317524 10317577 chrX 10317652 10317705 19 127 0.0 7.5 3.8 4.0 181 chrX 10317524 intron alpha-Man-I - chrX 10317614 intron alpha-Man-I - chrX 10317705 intron alpha-Man-I - chrX_19_10315001 chrX_10315001 RAL-843 3653 chrX 10348759 10348815 chrX 10356374 10356430 springer 14 7615 9.5 7.5 8.5 1.5 7671 chrX 10348759 intergenic snoRNA:U3:9B + chrX 10352594 intergenic not near genes chrX 10356430 intergenic l(1)G0289 - chrX_14_10350001 chrX_10350001 RAL-843 3654 chrX 10367139 10367158 chrX 10367298 10367309 7 158 20.0 7.5 13.8 0.5 170 chrX 10367139 exon CG32679 - chrX 10367224 intron CG32679 - chrX 10367309 intron CG32679 - chrX_7_10365001 chrX_10365001 RAL-843 3655 chrX 10367159 10367192 chrX 10367297 10367351 19 150 11.5 7.0 9.2 1.9 192 chrX 10367159 exon CG32679 - chrX 10367255 intron CG32679 - chrX 10367351 exon CG32679 - chrX_19_10365001 chrX_10365001 RAL-843 3656 chrX 10367196 10367204 chrX 10367335 10367353 4 148 10.0 17.5 13.8 0.3 157 chrX 10367196 exon CG32679 - chrX 10367274 intron CG32679 - chrX 10367353 exon CG32679 - chrX_4_10365001 chrX_10365001 RAL-843 3657 chrX 10401353 10401418 chrX 10401484 10401549 18 130 5.0 4.0 4.5 3.3 196 chrX 10401353 intron flw + chrX 10401451 intron flw + chrX 10401549 intron flw + chrX_18_10400001 chrX_10400001 RAL-843 3658 chrX 10550294 10550352 chrX 10550422 10550480 18 128 4.0 6.0 5.0 3.0 186 chrX 10550294 intron spri - chrX 10550387 intron spri - chrX 10550480 intron spri - chrX_18_10550001 chrX_10550001 RAL-843 3659 chrX 10550817 10550881 chrX 10552334 10552398 hobo 26 1514 8.5 5.5 7.0 3.2 1581 chrX 10550817 intron spri - chrX 10551608 intron spri - chrX 10552398 intron spri - chrX_26_10550001 chrX_10550001 RAL-843 3660 chrX 10553707 10553766 chrX 10553894 10553958 19 188 6.0 4.0 5.0 3.2 251 chrX 10553707 intron spri - chrX 10553832 intron spri - chrX 10553958 intron spri - chrX_19_10550001 chrX_10550001 RAL-843 3661 chrX 10651580 10651644 chrX 10651746 10651810 20 166 0.5 8.0 4.2 3.8 230 chrX 10651580 intron X11Lbeta + chrX 10651695 intron X11Lbeta + chrX 10651810 intron X11Lbeta + chrX_20_10650001 chrX_10650001 RAL-843 3662 chrX 10686007 10686084 chrX 10691194 10691200 roo 20 5183 7.5 0.5 4.0 4.0 5193 chrX 10686007 intron X11Lbeta + chrX 10688604 intron X11Lbeta + chrX 10691200 intron X11Lbeta + chrX_20_10685001 chrX_10685001 RAL-843 3663 chrX 10739489 10739535 chrX 10739612 10739665 18 128 11.5 6.5 9.0 1.8 176 chrX 10739489 intron CG32676 - chrX 10739577 intron CG32676 - chrX 10739665 intron CG32676 - chrX_18_10735001 chrX_10735001 RAL-843 3664 chrX 10772630 10772688 chrX 10772763 10772786 16 125 8.5 11.5 10.0 1.5 156 chrX 10772630 intron CG15211 + chrX 10772708 intron CG15211 + chrX 10772786 intron CG15211 + chrX_16_10770001 chrX_10770001 RAL-843 3665 chrX 10772689 10772696 chrX 10772761 10772792 Tirant 4 105 7.0 11.0 9.0 0.4 103 chrX 10772689 intron CG15211 + chrX 10772740 intron CG15211 + chrX 10772792 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-843 3666 chrX 10876572 10876645 chrX 10876700 10876773 10 128 7.0 7.0 7.0 1.2 201 chrX 10876572 intron CG1637 - chrX 10876672 intron CG1637 - chrX 10876773 intron CG1637 - chrX_10_10875001 chrX_10875001 RAL-843 3667 chrX 11095959 11096014 chrX 11103111 11103166 HMS-Beagle 19 7152 10.5 11.0 10.8 1.6 7207 chrX 11095959 intergenic not near genes chrX 11099562 intergenic not near genes chrX 11103166 intron CG42249 + chrX_19_11095001 chrX_11095001 RAL-843 3668 chrX 11109417 11109417 chrX 12946233 12946234 4 1836817 31.0 22.0 26.5 0.1 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_4_12025001 chrX_12025001 RAL-843 3669 chrX 11166716 11166744 chrX 11166840 11166875 9 130 11.5 5.5 8.5 0.9 159 chrX 11166716 intergenic not near genes chrX 11166796 intergenic not near genes chrX 11166875 intergenic not near genes chrX_9_11165001 chrX_11165001 RAL-843 3670 chrX 11166754 11166781 chrX 11166885 11166912 6 131 6.0 13.5 9.8 0.6 158 chrX 11166754 intergenic not near genes chrX 11166833 intergenic not near genes chrX 11166912 intergenic not near genes chrX_6_11165001 chrX_11165001 RAL-843 3671 chrX 11184204 11184258 chrX 11189333 11189387 flea 5 5129 11.5 4.0 7.8 0.6 5183 chrX 11184204 intergenic not near genes chrX 11186796 intergenic not near genes chrX 11189387 intergenic not near genes chrX_5_11185001 chrX_11185001 RAL-843 3672 chrX 11191848 11191918 chrX 11191985 11191985 11 130 6.5 5.5 6.0 1.6 137 chrX 11191848 intergenic not near genes chrX 11191916 intergenic not near genes chrX 11191985 intergenic not near genes chrX_11_11190001 chrX_11190001 RAL-843 3673 chrX 11243762 11243826 chrX 11244023 11244087 20 260 3.0 4.5 3.8 4.2 325 chrX 11243762 intron CG44422 - chrX 11243924 intron CG44422 - chrX 11244087 intron CG44422 - chrX_20_11240001 chrX_11240001 RAL-843 3674 chrX 11268540 11268591 chrX 11270062 11270119 hopper2 13 1535 0.0 9.5 4.8 2.2 1579 chrX 11268540 intron CG44422 - chrX 11269330 intron CG44422 - chrX 11270119 intron CG44422 - chrX_13_11265001 chrX_11265001 RAL-843 3675 chrX 11312018 11312088 chrX 11319416 11319445 Stalker2 20 7396 4.5 6.0 5.2 3.2 7427 chrX 11312018 intergenic not near genes chrX 11315732 intergenic not near genes chrX 11319445 intergenic not near genes chrX_20_11315001 chrX_11315001 RAL-843 3676 chrX 11319911 11319920 chrX 11320070 11320079 7 159 3.0 19.5 11.2 0.6 168 chrX 11319911 intergenic not near genes chrX 11319995 intergenic not near genes chrX 11320079 intergenic not near genes chrX_7_11315001 chrX_11315001 RAL-843 3677 chrX 11340823 11340891 chrX 11340952 11341008 27 120 12.5 9.0 10.8 2.3 185 chrX 11340823 intron CG34348 + chrX 11340916 intron CG34348 + chrX 11341008 intron CG34348 + chrX_27_11340001 chrX_11340001 RAL-843 3678 chrX 11340896 11340901 chrX 11340950 11340993 4 86 9.0 9.0 9.0 0.4 97 chrX 11340896 intron CG34348 + chrX 11340944 intron CG34348 + chrX 11340993 intron CG34348 + chrX_4_11340001 chrX_11340001 RAL-843 3679 chrX 11379716 11379790 chrX 11379911 11379972 29 193 11.0 8.5 9.8 2.7 256 chrX 11379716 intron dlg1 + chrX 11379844 intron dlg1 + chrX 11379972 intron dlg1 + chrX_29_11375001 chrX_11375001 RAL-843 3680 chrX 11464770 11464830 chrX 11464884 11464959 28 125 7.5 9.0 8.2 3.0 189 chrX 11464770 intron CG43155 + chrX 11464864 intron CG43155 + chrX 11464959 intron CG43155 + chrX_28_11460001 chrX_11460001 RAL-843 3681 chrX 11535001 11535045 chrX 11541521 11541565 Burdock 25 6519 15.0 10.5 12.8 1.8 6564 chrX 11535001 intron Drak + chrX 11538283 intron Drak + chrX 11541565 intron Drak + chrX_25_11535001 chrX_11535001 RAL-843 3682 chrX 11633370 11633439 chrX 11640474 11640543 297 23 7103 7.0 7.5 7.2 2.8 7173 chrX 11633370 intron Ptp10D + chrX 11636956 intron Ptp10D + chrX 11640543 intron Ptp10D + chrX_23_11635001 chrX_11635001 RAL-843 3683 chrX 11645081 11645130 chrX 11648300 11648350 NOF 10 3219 4.0 4.5 4.2 1.9 3269 chrX 11645081 intron Ptp10D + chrX 11646716 intron Ptp10D + chrX 11648350 intron Ptp10D + chrX_10_11645001 chrX_11645001 RAL-843 3684 chrX 11761989 11762000 chrX 11762087 11762129 10 118 4.5 8.0 6.2 1.4 140 chrX 11761989 intron m + chrX 11762059 intron m + chrX 11762129 intron m + chrX_10_11760001 chrX_11760001 RAL-843 3685 chrX 11798968 11799027 chrX 11799104 11799163 18 136 6.0 6.0 6.0 2.6 195 chrX 11798968 intron CkIIbeta + chrX 11799066 intron CkIIbeta + chrX 11799163 intron CkIIbeta + chrX_18_11795001 chrX_11795001 RAL-843 3686 chrX 11804636 11804689 chrX 11804790 11804843 17 154 5.0 10.0 7.5 2.0 207 chrX 11804636 intron Hsc70-3 - chrX 11804740 intron Hsc70-3 - chrX 11804843 intron Hsc70-3 - chrX_17_11800001 chrX_11800001 RAL-843 3687 chrX 11922320 11922382 chrX 11922498 11922565 26 183 6.0 5.0 5.5 4.0 245 chrX 11922320 exon Sclp - chrX 11922442 intron Sclp - chrX 11922565 intron Sclp - chrX_26_11920001 chrX_11920001 RAL-843 3688 chrX 12041137 12041198 chrX 12041618 12041685 25 476 12.5 10.0 11.2 2.0 548 chrX 12041137 intergenic not near genes chrX 12041411 intergenic not near genes chrX 12041685 intergenic not near genes chrX_25_12040001 chrX_12040001 RAL-843 3689 chrX 12043782 12043853 chrX 12043921 12043992 32 138 7.5 5.5 6.5 4.3 210 chrX 12043782 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043887 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043992 5` UTR,5` UTR CR43960 +,Ten-a + chrX_32_12040001 chrX_12040001 RAL-843 3690 chrX 12053489 12053559 chrX 12054067 12054137 17 576 8.0 9.0 8.5 1.8 648 chrX 12053489 intron,intron CR43960 +,Ten-a + chrX 12053813 intron,intron CR43960 +,Ten-a + chrX 12054137 intron,intron CR43960 +,Ten-a + chrX_17_12050001 chrX_12050001 RAL-843 3691 chrX 12168100 12168146 chrX 12173592 12173618 I-element 12 5490 8.5 3.0 5.8 1.8 5518 chrX 12168100 intron Ten-a + chrX 12170859 intron Ten-a + chrX 12173618 intron Ten-a + chrX_12_12170001 chrX_12170001 RAL-843 3692 chrX 12176707 12176752 chrX 12176833 12176878 25 124 0.0 9.0 4.5 4.5 171 chrX 12176707 intron,3` UTR Ten-a +,CG1924 - chrX 12176792 intron,3` UTR Ten-a +,CG1924 - chrX 12176878 intron,3` UTR Ten-a +,CG1924 - chrX_25_12175001 chrX_12175001 RAL-843 3693 chrX 12176759 12176766 chrX 12176824 12176886 6 112 0.5 8.5 4.5 1.1 127 chrX 12176759 intron,3` UTR Ten-a +,CG1924 - chrX 12176822 intron,3` UTR Ten-a +,CG1924 - chrX 12176886 intron,3` UTR Ten-a +,CG1924 - chrX_6_12175001 chrX_12175001 RAL-843 3694 chrX 12184245 12184283 chrX 12184369 12184385 21 125 10.5 18.0 14.2 1.4 140 chrX 12184245 intron Ten-a + chrX 12184315 intron Ten-a + chrX 12184385 intron Ten-a + chrX_21_12180001 chrX_12180001 RAL-843 3695 chrX 12191550 12191585 chrX 12191688 12191723 15 138 5.5 8.0 6.8 1.9 173 chrX 12191550 intron Ten-a + chrX 12191636 intron Ten-a + chrX 12191723 intron Ten-a + chrX_15_12190001 chrX_12190001 RAL-843 3696 chrX 12202724 12202799 chrX 12202856 12202932 17 133 4.5 7.0 5.8 2.5 208 chrX 12202724 intron Ten-a + chrX 12202828 intron Ten-a + chrX 12202932 intron Ten-a + chrX_17_12200001 chrX_12200001 RAL-843 3697 chrX 12246923 12246962 chrX 12247061 12247100 14 138 9.5 7.5 8.5 1.5 177 chrX 12246923 intron Ten-a + chrX 12247012 intron Ten-a + chrX 12247100 intron Ten-a + chrX_14_12245001 chrX_12245001 RAL-843 3698 chrX 12272795 12272866 chrX 12272924 12272995 22 129 3.5 5.5 4.5 4.0 200 chrX 12272795 intron Ten-a + chrX 12272895 intron Ten-a + chrX 12272995 intron Ten-a + chrX_22_12270001 chrX_12270001 RAL-843 3699 chrX 12277179 12277205 chrX 12277290 12277347 7 137 8.0 11.0 9.5 0.7 168 chrX 12277179 intron Ten-a + chrX 12277263 intron Ten-a + chrX 12277347 intron Ten-a + chrX_7_12275001 chrX_12275001 RAL-843 3700 chrX 12312546 12312564 chrX 12312672 12312690 7 126 9.0 6.0 7.5 0.8 144 chrX 12312546 intron Ten-a + chrX 12312618 intron Ten-a + chrX 12312690 intron Ten-a + chrX_7_12310001 chrX_12310001 RAL-843 3701 chrX 12350728 12350788 chrX 12350856 12350891 18 128 7.0 0.0 3.5 4.0 163 chrX 12350728 intergenic not near genes chrX 12350810 intergenic not near genes chrX 12350891 intergenic not near genes chrX_18_12350001 chrX_12350001 RAL-843 3702 chrX 12375447 12375504 chrX 12375588 12375652 20 144 10.5 5.5 8.0 2.2 205 chrX 12375447 intergenic Ir11a - chrX 12375550 intergenic Ir11a - chrX 12375652 exon Ir11a - chrX_20_12375001 chrX_12375001 RAL-843 3703 chrX 12381814 12381846 chrX 12385771 12385809 flea 9 3962 2.5 4.0 3.2 2.1 3995 chrX 12381814 intergenic not near genes chrX 12383812 intergenic not near genes chrX 12385809 intergenic not near genes chrX_9_12380001 chrX_12380001 RAL-843 3704 chrX 12430897 12430954 chrX 12431025 12431082 19 126 6.5 0.5 3.5 4.2 185 chrX 12430897 intergenic not near genes chrX 12430990 intergenic not near genes chrX 12431082 intergenic not near genes chrX_19_12430001 chrX_12430001 RAL-843 3705 chrX 12440382 12440403 chrX 12440514 12440535 6 132 0.0 14.0 7.0 0.8 153 chrX 12440382 intron Pkcdelta + chrX 12440458 intron Pkcdelta + chrX 12440535 intron Pkcdelta + chrX_6_12440001 chrX_12440001 RAL-843 3706 chrX 12449493 12449521 chrX 12449665 12449714 9 191 9.5 8.5 9.0 0.9 221 chrX 12449493 intron Pkcdelta + chrX 12449604 intron Pkcdelta + chrX 12449714 intron Pkcdelta + chrX_9_12445001 chrX_12445001 RAL-843 3707 chrX 12449522 12449535 chrX 12449660 12449694 7 179 8.5 7.5 8.0 0.8 172 chrX 12449522 intron Pkcdelta + chrX 12449608 intron Pkcdelta + chrX 12449694 intron Pkcdelta + chrX_7_12445001 chrX_12445001 RAL-843 3708 chrX 12511274 12511351 chrX 12511406 12511485 18 132 0.0 5.0 2.5 5.1 211 chrX 12511274 intron CG2556 + chrX 12511380 intron CG2556 + chrX 12511485 intron CG2556 + chrX_18_12510001 chrX_12510001 RAL-843 3709 chrX 12528815 12528838 chrX 12528941 12528964 9 126 10.5 1.0 5.8 1.3 149 chrX 12528815 intron CG43921 - chrX 12528890 intron CG43921 - chrX 12528964 intron CG43921 - chrX_9_12525001 chrX_12525001 RAL-843 3710 chrX 12532597 12532670 chrX 12532793 12532841 12 177 5.5 0.0 2.8 3.2 244 chrX 12532597 intron CG43921 - chrX 12532719 intron CG43921 - chrX 12532841 intron CG43921 - chrX_12_12530001 chrX_12530001 RAL-843 3711 chrX 12535929 12535965 chrX 12536058 12536095 6 130 0.0 5.5 2.8 1.6 166 chrX 12535929 intron CG43921 - chrX 12536012 intron CG43921 - chrX 12536095 intron CG43921 - chrX_6_12535001 chrX_12535001 RAL-843 3712 chrX 12635378 12635430 chrX 12635513 12635565 16 135 7.5 4.5 6.0 2.3 187 chrX 12635378 intron Tomosyn + chrX 12635472 intron Tomosyn + chrX 12635565 intron Tomosyn + chrX_16_12635001 chrX_12635001 RAL-843 3713 chrX 12808444 12808476 chrX 12808571 12808617 7 139 6.0 6.0 6.0 1.0 173 chrX 12808444 intron Pde9 - chrX 12808530 intron Pde9 - chrX 12808617 intron Pde9 - chrX_7_12805001 chrX_12805001 RAL-843 3714 chrX 12823166 12823223 chrX 12823293 12823350 11 127 3.5 5.0 4.2 2.1 184 chrX 12823166 intron Pde9 - chrX 12823258 intron Pde9 - chrX 12823350 intron Pde9 - chrX_11_12820001 chrX_12820001 RAL-843 3715 chrX 12927290 12927358 chrX 12927416 12927484 13 126 5.5 0.0 2.8 3.4 194 chrX 12927290 intron fne + chrX 12927387 intron fne + chrX 12927484 intron fne + chrX_13_12925001 chrX_12925001 RAL-843 3716 chrX 12930549 12930603 chrX 12937715 12937763 HMS-Beagle 20 7165 5.0 16.5 10.8 1.7 7214 chrX 12930549 intron fne + chrX 12934156 intron fne + chrX 12937763 intron fne + chrX_20_12930001 chrX_12930001 RAL-843 3717 chrX 12953842 12953922 chrX 12954030 12954111 15 189 3.5 3.0 3.2 3.6 269 chrX 12953842 intron hec - chrX 12953976 intron hec - chrX 12954111 intron hec - chrX_15_12950001 chrX_12950001 RAL-843 3718 chrX 12960721 12960788 chrX 12960852 12960919 18 131 7.5 5.5 6.5 2.4 198 chrX 12960721 3` UTR CG32642 + chrX 12960820 intergenic CG32642 + chrX 12960919 intergenic CG32642 + chrX_18_12960001 chrX_12960001 RAL-843 3719 chrX 12985544 12985550 chrX 12985679 12985685 4 135 11.0 18.0 14.5 0.3 141 chrX 12985544 intergenic CG32643 + chrX 12985614 intergenic not near genes chrX 12985685 intergenic not near genes chrX_4_12985001 chrX_12985001 RAL-843 3720 chrX 13061228 13061236 chrX 13061366 13061379 5 140 14.0 10.0 12.0 0.4 151 chrX 13061228 intron rad + chrX 13061304 intron rad + chrX 13061379 intron rad + chrX_5_13060001 chrX_13060001 RAL-843 3721 chrX 13061237 13061264 chrX 13061341 13061407 13 128 7.0 4.0 5.5 2.0 170 chrX 13061237 intron rad + chrX 13061322 intron rad + chrX 13061407 intron rad + chrX_13_13060001 chrX_13060001 RAL-843 3722 chrX 13104029 13104099 chrX 13104167 13104230 14 136 0.0 0.0 0.0 14.0 201 chrX 13104029 intron CG43313 - chrX 13104130 intron CG43313 - chrX 13104230 intron CG43313 - chrX_14_13100001 chrX_13100001 RAL-843 3723 chrX 13146554 13146628 chrX 13146692 13146766 23 138 7.5 9.5 8.5 2.4 212 chrX 13146554 intron CG32645 + chrX 13146660 intron CG32645 + chrX 13146766 intron CG32645 + chrX_23_13145001 chrX_13145001 RAL-843 3724 chrX 13168522 13168570 chrX 13168673 13168721 12 150 6.5 5.0 5.8 1.8 199 chrX 13168522 intron CG34411 - chrX 13168622 intron CG34411 - chrX 13168721 intron CG34411 - chrX_12_13165001 chrX_13165001 RAL-843 3725 chrX 13172300 13172376 chrX 13172426 13172502 15 124 6.0 8.0 7.0 1.9 202 chrX 13172300 intron CG34411 - chrX 13172401 intron CG34411 - chrX 13172502 intron CG34411 - chrX_15_13170001 chrX_13170001 RAL-843 3726 chrX 13236832 13236900 chrX 13236960 13237035 25 131 3.0 7.0 5.0 4.2 203 chrX 13236832 intron mew - chrX 13236934 intron mew - chrX 13237035 intron mew - chrX_25_13235001 chrX_13235001 RAL-843 3727 chrX 13278110 13278184 chrX 13278243 13278317 24 133 9.5 6.5 8.0 2.7 207 chrX 13278110 intron HDAC4 - chrX 13278214 intron HDAC4 - chrX 13278317 intron HDAC4 - chrX_24_13275001 chrX_13275001 RAL-843 3728 chrX 13347008 13347040 chrX 13347165 13347197 6 157 0.5 12.5 6.5 0.8 189 chrX 13347008 intergenic not near genes chrX 13347102 intergenic not near genes chrX 13347197 intergenic not near genes chrX_6_13345001 chrX_13345001 RAL-843 3729 chrX 13371365 13371399 chrX 13371492 13371509 9 125 8.5 7.0 7.8 1.0 144 chrX 13371365 intron CG1640 + chrX 13371437 intron CG1640 + chrX 13371509 intron CG1640 + chrX_9_13370001 chrX_13370001 RAL-843 3730 chrX 13401442 13401511 chrX 13401844 13401913 jockey 18 402 5.5 4.5 5.0 3.0 471 chrX 13401442 intergenic CG1673 +,CG12725 - chrX 13401678 intergenic CG12725 -,CG1673 + chrX 13401913 3` UTR CG12725 - chrX_18_13400001 chrX_13400001 RAL-843 3731 chrX 13421446 13421465 chrX 13421580 13421599 13 134 0.0 6.5 3.2 3.1 153 chrX 13421446 intergenic Set2 + chrX 13421522 intergenic Set2 + chrX 13421599 intergenic not near genes chrX_13_13420001 chrX_13420001 RAL-843 3732 chrX 13429421 13429484 chrX 13430620 13430622 jockey 22 1195 6.5 5.5 6.0 3.1 1201 chrX 13429421 intergenic not near genes chrX 13430022 intergenic not near genes chrX 13430622 intergenic not near genes chrX_22_13430001 chrX_13430001 RAL-843 3733 chrX 13438704 13438763 chrX 13438845 13438854 14 133 7.0 1.5 4.2 2.7 150 chrX 13438704 intergenic not near genes chrX 13438779 intergenic not near genes chrX 13438854 intergenic not near genes chrX_14_13435001 chrX_13435001 RAL-843 3734 chrX 13443374 13443389 chrX 13443497 13443510 5 123 17.5 11.5 14.5 0.3 136 chrX 13443374 intergenic not near genes chrX 13443442 intergenic not near genes chrX 13443510 intergenic not near genes chrX_5_13440001 chrX_13440001 RAL-843 3735 chrX 13443395 13443414 chrX 13443492 13443536 7 116 13.5 10.5 12.0 0.5 141 chrX 13443395 intergenic not near genes chrX 13443466 intergenic not near genes chrX 13443536 intergenic not near genes chrX_7_13440001 chrX_13440001 RAL-843 3736 chrX 13463627 13463677 chrX 13469254 13469304 mdg3 23 5626 4.0 6.0 5.0 3.8 5677 chrX 13463627 intron Neto + chrX 13466466 intron Neto + chrX 13469304 intron Neto + chrX_23_13465001 chrX_13465001 RAL-843 3737 chrX 13471327 13471392 chrX 13471439 13471525 5 129 6.0 6.5 6.2 0.7 198 chrX 13471327 intron Neto + chrX 13471426 intron Neto + chrX 13471525 intron Neto + chrX_5_13470001 chrX_13470001 RAL-843 3738 chrX 13658741 13658751 chrX 13658881 13658891 4 140 6.5 12.5 9.5 0.4 150 chrX 13658741 intron NFAT + chrX 13658816 intron NFAT + chrX 13658891 intron NFAT + chrX_4_13655001 chrX_13655001 RAL-843 3739 chrX 13843340 13843357 chrX 13843543 13843560 8 202 19.0 8.0 13.5 0.6 220 chrX 13843340 intron AMPdeam - chrX 13843450 intron AMPdeam - chrX 13843560 intron AMPdeam - chrX_8_13840001 chrX_13840001 RAL-843 3740 chrX 13843358 13843410 chrX 13843541 13843613 27 195 7.0 7.0 7.0 3.4 255 chrX 13843358 intron AMPdeam - chrX 13843486 intron AMPdeam - chrX 13843613 intron AMPdeam - chrX_27_13840001 chrX_13840001 RAL-843 3741 chrX 13875934 13875989 chrX 13876063 13876145 10 135 4.5 0.0 2.2 3.1 211 chrX 13875934 intron mamo - chrX 13876040 intron mamo - chrX 13876145 intron mamo - chrX_10_13875001 chrX_13875001 RAL-843 3742 chrX 13908752 13908798 chrX 13908875 13908889 13 116 11.0 11.5 11.2 1.1 137 chrX 13908752 intron mamo - chrX 13908820 intron mamo - chrX 13908889 intron mamo - chrX_13_13905001 chrX_13905001 RAL-843 3743 chrX 13935489 13935525 chrX 13935612 13935638 11 130 7.0 10.0 8.5 1.2 149 chrX 13935489 intron mamo - chrX 13935564 intron mamo - chrX 13935638 intron mamo - chrX_11_13935001 chrX_13935001 RAL-843 3744 chrX 13937931 13937978 chrX 13941252 13941299 I-element 7 3319 3.5 4.5 4.0 1.4 3368 chrX 13937931 intron mamo - chrX 13939615 intron mamo - chrX 13941299 intron mamo - chrX_7_13935001 chrX_13935001 RAL-843 3745 chrX 14030700 14030725 chrX 14035337 14035361 copia 8 4636 14.5 5.0 9.8 0.7 4661 chrX 14030700 intergenic not near genes chrX 14033030 intergenic not near genes chrX 14035361 intergenic not near genes chrX_8_14030001 chrX_14030001 RAL-843 3746 chrX 14075486 14075559 chrX 14075631 14075704 32 142 4.5 4.5 4.5 5.8 218 chrX 14075486 intergenic not near genes chrX 14075595 intergenic not near genes chrX 14075704 intergenic not near genes chrX_32_14075001 chrX_14075001 RAL-843 3747 chrX 14081941 14082009 chrX 14082283 14082354 18 342 7.0 6.5 6.8 2.3 413 chrX 14081941 intergenic not near genes chrX 14082148 intergenic not near genes chrX 14082354 intergenic not near genes chrX_18_14080001 chrX_14080001 RAL-843 3748 chrX 14104990 14105048 chrX 14114191 14114234 roo 21 9197 8.0 7.5 7.8 2.4 9244 chrX 14104990 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114234 5` UTR CR44657 + chrX_21_14105001 chrX_14105001 RAL-843 3749 chrX 14131431 14131517 chrX 14131569 14131628 22 122 4.0 6.0 5.0 3.7 197 chrX 14131431 intergenic not near genes chrX 14131530 intergenic not near genes chrX 14131628 intergenic not near genes chrX_22_14130001 chrX_14130001 RAL-843 3750 chrX 14142859 14142905 chrX 14142986 14143032 9 125 3.5 2.5 3.0 2.2 173 chrX 14142859 intergenic not near genes chrX 14142946 intergenic not near genes chrX 14143032 intergenic not near genes chrX_9_14140001 chrX_14140001 RAL-843 3751 chrX 14157551 14157615 chrX 14163258 14163322 297 11 5707 5.5 4.5 5.0 1.8 5771 chrX 14157551 intergenic not near genes chrX 14160436 intergenic not near genes chrX 14163322 intergenic not near genes chrX_11_14160001 chrX_14160001 RAL-843 3752 chrX 14209416 14209490 chrX 14209557 14209631 25 139 9.0 7.0 8.0 2.8 215 chrX 14209416 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209524 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209631 intron,intron l(1)G0007 +,l(1)G0469 - chrX_25_14205001 chrX_14205001 RAL-843 3753 chrX 14259773 14259832 chrX 14260050 14260109 19 271 7.0 4.5 5.8 2.8 336 chrX 14259773 intergenic not near genes chrX 14259941 intergenic not near genes chrX 14260109 intergenic not near genes chrX_19_14255001 chrX_14255001 RAL-843 3754 chrX 14333263 14333314 chrX 14333369 14333406 16 110 2.0 3.5 2.8 4.2 143 chrX 14333263 intron dpr8 + chrX 14333334 intron dpr8 + chrX 14333406 intron dpr8 + chrX_16_14330001 chrX_14330001 RAL-843 3755 chrX 14353409 14353464 chrX 14353521 14353591 15 113 4.0 4.0 4.0 3.0 182 chrX 14353409 intron dpr8 + chrX 14353500 intron dpr8 + chrX 14353591 intron dpr8 + chrX_15_14350001 chrX_14350001 RAL-843 3756 chrX 14371775 14371838 chrX 14371889 14371937 21 123 3.0 1.0 2.0 7.0 162 chrX 14371775 intron dpr8 + chrX 14371856 intron dpr8 + chrX 14371937 intron dpr8 + chrX_21_14370001 chrX_14370001 RAL-843 3757 chrX 14381367 14381408 chrX 14381571 14381612 13 204 6.0 5.5 5.8 1.9 245 chrX 14381367 intron,3` UTR dpr8 +,betaNACtes4 + chrX 14381490 intron dpr8 + chrX 14381612 intron dpr8 + chrX_13_14380001 chrX_14380001 RAL-843 3758 chrX 14401504 14401572 chrX 14401663 14401730 16 158 5.5 4.5 5.0 2.7 226 chrX 14401504 intron dpr8 + chrX 14401617 intron dpr8 + chrX 14401730 intron dpr8 + chrX_16_14400001 chrX_14400001 RAL-843 3759 chrX 14411969 14411986 chrX 14412100 14412117 4 130 8.0 14.0 11.0 0.3 148 chrX 14411969 intron dpr8 + chrX 14412043 intron dpr8 + chrX 14412117 intron dpr8 + chrX_4_14410001 chrX_14410001 RAL-843 3760 chrX 14416270 14416315 chrX 14421087 14421132 F-element 15 4817 8.5 6.5 7.5 1.8 4862 chrX 14416270 intron dpr8 + chrX 14418701 intron dpr8 + chrX 14421132 intron dpr8 + chrX_15_14415001 chrX_14415001 RAL-843 3761 chrX 14484919 14484980 chrX 14485058 14485119 14 138 0.0 3.5 1.8 5.0 200 chrX 14484919 intergenic not near genes chrX 14485019 intergenic not near genes chrX 14485119 intergenic not near genes chrX_14_14485001 chrX_14485001 RAL-843 3762 chrX 14500460 14500532 chrX 14500611 14500683 27 149 7.0 7.5 7.2 3.3 223 chrX 14500460 intergenic not near genes chrX 14500572 intergenic not near genes chrX 14500683 intergenic not near genes chrX_27_14500001 chrX_14500001 RAL-843 3763 chrX 14528639 14528714 chrX 14528782 14528857 27 143 4.5 4.0 4.2 5.2 218 chrX 14528639 intergenic not near genes chrX 14528748 intergenic not near genes chrX 14528857 intergenic not near genes chrX_27_14525001 chrX_14525001 RAL-843 3764 chrX 14572843 14572857 chrX 14572981 14572995 4 136 13.5 7.5 10.5 0.3 152 chrX 14572843 intergenic not near genes chrX 14572919 intergenic not near genes chrX 14572995 intergenic not near genes chrX_4_14570001 chrX_14570001 RAL-843 3765 chrX 14572859 14572907 chrX 14572972 14573019 22 126 6.5 6.0 6.2 3.1 160 chrX 14572859 intergenic not near genes chrX 14572939 intergenic not near genes chrX 14573019 intergenic not near genes chrX_22_14570001 chrX_14570001 RAL-843 3766 chrX 14636428 14636470 chrX 14641909 14641961 I-element 23 5487 10.5 9.5 10.0 2.1 5533 chrX 14636428 intron NetA - chrX 14639194 intron NetA - chrX 14641961 intron NetA - chrX_23_14635001 chrX_14635001 RAL-843 3767 chrX 14636471 14636483 chrX 14641900 14641974 I-element 5 5478 7.0 7.5 7.2 0.6 5503 chrX 14636471 intron NetA - chrX 14639222 intron NetA - chrX 14641974 intron NetA - chrX_5_14635001 chrX_14635001 RAL-843 3768 chrX 14710956 14710973 chrX 14711097 14711114 8 141 0.0 13.0 6.5 1.1 158 chrX 14710956 intron NetB - chrX 14711035 intron NetB - chrX 14711114 intron NetB - chrX_8_14710001 chrX_14710001 RAL-843 3769 chrX 14713992 14714059 chrX 14714124 14714404 14 328 5.5 0.0 2.8 3.7 412 chrX 14713992 intron NetB - chrX 14714198 intron NetB - chrX 14714404 intron NetB - chrX_14_14710001 chrX_14710001 RAL-843 3770 chrX 14718101 14718167 chrX 14718239 14718305 23 138 6.0 6.5 6.2 3.2 204 chrX 14718101 intron NetB - chrX 14718203 intron NetB - chrX 14718305 intron,3` UTR NetB -,hog - chrX_23_14715001 chrX_14715001 RAL-843 3771 chrX 14771443 14771511 chrX 14771617 14771680 14 174 2.5 3.0 2.8 3.7 237 chrX 14771443 intergenic not near genes chrX 14771562 intergenic not near genes chrX 14771680 intergenic not near genes chrX_14_14770001 chrX_14770001 RAL-843 3772 chrX 14777992 14778048 chrX 14782839 14782895 Doc 17 4845 11.5 8.5 10.0 1.5 4903 chrX 14777992 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782895 intergenic Ag5r2 - chrX_17_14780001 chrX_14780001 RAL-843 3773 chrX 14818722 14818790 chrX 14823976 14824044 copia 20 5248 14.0 9.5 11.8 1.6 5322 chrX 14818722 intron rut - chrX 14821383 intron rut - chrX 14824044 intron rut - chrX_20_14820001 chrX_14820001 RAL-843 3774 chrX 14936817 14936883 chrX 14946124 14946190 roo 19 9306 9.5 7.0 8.2 2.1 9373 chrX 14936817 intron pdgy - chrX 14941504 intron pdgy - chrX 14946190 intron pdgy - chrX_19_14940001 chrX_14940001 RAL-843 3775 chrX 14968029 14968099 chrX 14968158 14968228 18 128 0.5 8.0 4.2 3.5 199 chrX 14968029 intron eag + chrX 14968128 intron eag + chrX 14968228 intron eag + chrX_18_14965001 chrX_14965001 RAL-843 3776 chrX 14981682 14981738 chrX 14981811 14981867 18 128 7.0 5.0 6.0 2.6 185 chrX 14981682 intron eag + chrX 14981774 intron eag + chrX 14981867 intron eag + chrX_18_14980001 chrX_14980001 RAL-843 3777 chrX 15025197 15025238 chrX 15025341 15025382 16 144 0.0 14.5 7.2 2.0 185 chrX 15025197 intron,intron hiw -,be + chrX 15025290 intron,intron hiw -,be + chrX 15025382 intron,intron hiw -,be + chrX_16_15025001 chrX_15025001 RAL-843 3778 chrX 15029451 15029508 chrX 15029582 15029639 9 130 4.5 6.5 5.5 1.4 188 chrX 15029451 intron,intron hiw -,be + chrX 15029545 intron,intron hiw -,be + chrX 15029639 intron,intron hiw -,be + chrX_9_15025001 chrX_15025001 RAL-843 3779 chrX 15059130 15059198 chrX 15059286 15059354 10 156 4.0 5.0 4.5 1.8 224 chrX 15059130 exon hiw - chrX 15059242 intron hiw - chrX 15059354 exon hiw - chrX_10_15055001 chrX_15055001 RAL-843 3780 chrX 15200602 15200639 chrX 15200728 15200765 14 126 8.0 4.5 6.2 1.9 163 chrX 15200602 intergenic not near genes chrX 15200684 intergenic not near genes chrX 15200765 intergenic not near genes chrX_14_15200001 chrX_15200001 RAL-843 3781 chrX 15228453 15228524 chrX 15228749 15228820 20 295 7.0 4.5 5.8 2.9 367 chrX 15228453 intergenic CG9101 - chrX 15228636 intergenic CG9101 - chrX 15228820 3` UTR CG9101 - chrX_20_15225001 chrX_15225001 RAL-843 3782 chrX 15265839 15265864 chrX 15265961 15265984 6 123 17.0 11.5 14.2 0.4 145 chrX 15265839 intergenic not near genes chrX 15265912 intergenic not near genes chrX 15265984 intergenic not near genes chrX_6_15265001 chrX_15265001 RAL-843 3783 chrX 15273663 15273675 chrX 15274880 15274892 1360 6 1215 24.5 8.5 16.5 0.3 1229 chrX 15273663 intergenic not near genes chrX 15274278 intergenic not near genes chrX 15274892 intergenic not near genes chrX_6_15270001 chrX_15270001 RAL-843 3784 chrX 15273690 15273715 chrX 15274876 15274932 1360 11 1208 14.5 8.0 11.2 0.9 1242 chrX 15273690 intergenic not near genes chrX 15274311 intergenic not near genes chrX 15274932 intergenic not near genes chrX_11_15270001 chrX_15270001 RAL-843 3785 chrX 15273718 15273733 chrX 15274868 15274920 1360 9 1200 9.5 7.5 8.5 0.9 1202 chrX 15273718 intergenic not near genes chrX 15274319 intergenic not near genes chrX 15274920 intergenic not near genes chrX_9_15270001 chrX_15270001 RAL-843 3786 chrX 15277591 15277664 chrX 15277726 15277799 22 134 7.0 6.0 6.5 2.9 208 chrX 15277591 intergenic not near genes chrX 15277695 intergenic not near genes chrX 15277799 intergenic not near genes chrX_22_15275001 chrX_15275001 RAL-843 3787 chrX 15358262 15358335 chrX 15358400 15358473 22 138 6.5 6.0 6.2 3.1 211 chrX 15358262 intron acj6 - chrX 15358368 intron acj6 - chrX 15358473 intron acj6 - chrX_22_15355001 chrX_15355001 RAL-843 3788 chrX 15413031 15413078 chrX 15417368 15417410 Juan 13 4346 11.0 9.5 10.2 1.2 4379 chrX 15413031 intron Cngl - chrX 15415220 intron Cngl - chrX 15417410 intron Cngl - chrX_13_15415001 chrX_15415001 RAL-843 3789 chrX 15421871 15421938 chrX 15423432 15423499 pogo 13 1557 7.5 6.0 6.8 1.7 1628 chrX 15421871 intron Cngl - chrX 15422685 intron Cngl - chrX 15423499 intron Cngl - chrX_13_15420001 chrX_15420001 RAL-843 3790 chrX 15435689 15435704 chrX 15436172 15436185 rover 5 483 0.5 21.0 10.8 0.4 496 chrX 15435689 intron Cngl - chrX 15435937 intron Cngl - chrX 15436185 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-843 3791 chrX 15591186 15591201 chrX 15591312 15591327 10 125 1.0 16.5 8.8 1.0 141 chrX 15591186 intron CG9220 - chrX 15591256 intron CG9220 - chrX 15591327 intron CG9220 - chrX_10_15590001 chrX_15590001 RAL-843 3792 chrX 15666165 15666229 chrX 15666292 15666350 21 122 6.0 9.5 7.8 2.4 185 chrX 15666165 intergenic CR43299 - chrX 15666258 intergenic not near genes chrX 15666350 intergenic not near genes chrX_21_15665001 chrX_15665001 RAL-843 3793 chrX 15671155 15671209 chrX 15671292 15671341 9 136 4.0 0.5 2.2 2.8 186 chrX 15671155 intergenic CG15646 - chrX 15671248 intergenic CG15646 - chrX 15671341 intergenic CG15646 - chrX_9_15670001 chrX_15670001 RAL-843 3794 chrX 15749603 15749680 chrX 15749760 15749833 18 155 6.5 5.5 6.0 2.6 230 chrX 15749603 intron CG8239 + chrX 15749718 intron CG8239 + chrX 15749833 exon CG8239 + chrX_18_15745001 chrX_15745001 RAL-843 3795 chrX 15898394 15898461 chrX 15898598 15898666 21 204 5.0 8.5 6.8 2.7 272 chrX 15898394 intron shi + chrX 15898530 intron shi + chrX 15898666 intron shi + chrX_21_15895001 chrX_15895001 RAL-843 3796 chrX 16100524 16100588 chrX 16100637 16100718 17 126 6.0 9.0 7.5 2.0 194 chrX 16100524 intron,intron CG42353 -,CG42354 - chrX 16100621 intron,intron CG42353 -,CG42354 - chrX 16100718 intron,intron CG42353 -,CG42354 - chrX_17_16100001 chrX_16100001 RAL-843 3797 chrX 16141364 16141434 chrX 16141545 16141579 34 178 6.5 4.5 5.5 5.2 215 chrX 16141364 intron disco-r - chrX 16141472 intron disco-r - chrX 16141579 intron disco-r - chrX_34_16140001 chrX_16140001 RAL-843 3798 chrX 16156664 16156725 chrX 16156820 16156881 28 156 8.0 10.0 9.0 2.8 217 chrX 16156664 intergenic not near genes chrX 16156772 intergenic not near genes chrX 16156881 intergenic not near genes chrX_28_16155001 chrX_16155001 RAL-843 3799 chrX 16172851 16172918 chrX 16173009 16173076 20 158 8.5 4.0 6.2 2.8 225 chrX 16172851 intergenic not near genes chrX 16172964 intergenic not near genes chrX 16173076 intergenic not near genes chrX_20_16170001 chrX_16170001 RAL-843 3800 chrX 16222742 16222766 chrX 16231142 16231166 roo 15 8400 0.0 6.0 3.0 3.8 8424 chrX 16222742 intergenic not near genes chrX 16226954 intergenic not near genes chrX 16231166 intergenic not near genes chrX_15_16225001 chrX_16225001 RAL-843 3801 chrX 16222774 16222804 chrX 16231134 16231204 roo 12 8397 0.5 5.0 2.8 3.2 8430 chrX 16222774 intergenic not near genes chrX 16226989 intergenic not near genes chrX 16231204 intergenic not near genes chrX_12_16225001 chrX_16225001 RAL-843 3802 chrX 16245903 16245957 chrX 16246060 16246114 INE-1 23 155 8.0 2.0 5.0 3.8 211 chrX 16245903 intergenic not near genes chrX 16246008 intergenic not near genes chrX 16246114 intergenic not near genes chrX_23_16245001 chrX_16245001 RAL-843 3803 chrX 16253831 16253856 chrX 16253968 16253993 8 137 0.0 9.5 4.8 1.4 162 chrX 16253831 intergenic snRNA:U5:14B - chrX 16253912 intergenic snRNA:U5:14B - chrX 16253993 intergenic snRNA:U5:14B - chrX_8_16250001 chrX_16250001 RAL-843 3804 chrX 16295490 16295502 chrX 16295624 16295636 5 134 12.0 0.0 6.0 0.7 146 chrX 16295490 intron CG9911 - chrX 16295563 intron CG9911 - chrX 16295636 intron CG9911 - chrX_5_16295001 chrX_16295001 RAL-843 3805 chrX 16329357 16329447 chrX 16329504 16329580 11 137 0.5 9.5 5.0 1.8 223 chrX 16329357 exon CG9919 - chrX 16329468 intron CG9919 - chrX 16329580 exon CG9919 - chrX_11_16325001 chrX_16325001 RAL-843 3806 chrX 16340618 16340695 chrX 16349822 16349902 roo 20 9205 0.0 5.0 2.5 5.7 9284 chrX 16340618 3` UTR Dsp1 + chrX 16345260 intergenic not near genes chrX 16349902 intergenic sl + chrX_20_16345001 chrX_16345001 RAL-843 3807 chrX 16437769 16437840 chrX 16437905 16437976 20 136 8.0 6.5 7.2 2.4 207 chrX 16437769 3` UTR,3` UTR hang +,CG9947 - chrX 16437872 3` UTR,3` UTR hang +,CG9947 - chrX 16437976 3` UTR,3` UTR hang +,CG9947 - chrX_20_16435001 chrX_16435001 RAL-843 3808 chrX 16492601 16492670 chrX 16498228 16498297 mdg3 21 5627 10.0 10.5 10.2 1.9 5696 chrX 16492601 intron para - chrX 16495449 intron para - chrX 16498297 exon para - chrX_21_16495001 chrX_16495001 RAL-843 3809 chrX 16529355 16529381 chrX 16529524 16529550 15 168 4.5 9.0 6.8 1.9 195 chrX 16529355 intron para - chrX 16529452 intron para - chrX 16529550 intron para - chrX_15_16525001 chrX_16525001 RAL-843 3810 chrX 16529382 16529436 chrX 16529520 16529597 9 158 0.0 8.5 4.2 1.7 215 chrX 16529382 intron para - chrX 16529490 intron para - chrX 16529597 intron para - chrX_9_16525001 chrX_16525001 RAL-843 3811 chrX 16569673 16569681 chrX 16569794 16569797 6 126 13.0 14.0 13.5 0.4 124 chrX 16569673 intron CanA-14F - chrX 16569735 intron CanA-14F - chrX 16569797 intron CanA-14F - chrX_6_16565001 chrX_16565001 RAL-843 3812 chrX 16650888 16650907 chrX 16651015 16651033 4 127 19.0 4.5 11.8 0.3 145 chrX 16650888 intergenic CG32573 +,CG42512 + chrX 16650960 intergenic CG32573 +,CG42512 + chrX 16651033 intergenic CG32573 +,CG42512 + chrX_4_16650001 chrX_16650001 RAL-843 3813 chrX 16650912 16650960 chrX 16651014 16651089 11 124 7.5 4.5 6.0 1.6 177 chrX 16650912 intergenic CG32573 +,CG42512 + chrX 16651000 intergenic CG32573 +,CG42512 + chrX 16651089 intergenic CG32573 +,CG42512 + chrX_11_16650001 chrX_16650001 RAL-843 3814 chrX 16707961 16707977 chrX 16708145 16708161 5 184 0.0 6.5 3.2 1.2 200 chrX 16707961 intron CG4678 + chrX 16708061 intron CG4678 + chrX 16708161 exon CG4678 + chrX_5_16705001 chrX_16705001 RAL-843 3815 chrX 16821185 16821259 chrX 16821315 16821389 30 129 4.0 2.0 3.0 7.5 204 chrX 16821185 intron CG4829 + chrX 16821287 intron CG4829 + chrX 16821389 intron CG4829 + chrX_30_16820001 chrX_16820001 RAL-843 3816 chrX 16852791 16852836 chrX 16852917 16852962 9 126 8.0 7.0 7.5 1.1 171 chrX 16852791 intron CG13003 - chrX 16852876 intron CG13003 - chrX 16852962 intron CG13003 - chrX_9_16850001 chrX_16850001 RAL-843 3817 chrX 16870030 16870092 chrX 16870162 16870225 17 130 9.0 8.0 8.5 1.8 195 chrX 16870030 intron CG13003 - chrX 16870128 intron CG13003 - chrX 16870225 intron CG13003 - chrX_17_16870001 chrX_16870001 RAL-843 3818 chrX 16925847 16925864 chrX 16925978 16925995 5 131 0.0 7.5 3.8 1.0 148 chrX 16925847 intron CG4928 + chrX 16925921 intron CG4928 + chrX 16925995 intron CG4928 + chrX_5_16925001 chrX_16925001 RAL-843 3819 chrX 16935957 16936023 chrX 16936425 16936491 jockey 8 468 7.0 3.5 5.2 1.3 534 chrX 16935957 intron CG4928 + chrX 16936224 intron CG4928 + chrX 16936491 intron CG4928 + chrX_8_16935001 chrX_16935001 RAL-843 3820 chrX 16951278 16951331 chrX 16951403 16951441 14 117 11.0 10.0 10.5 1.2 163 chrX 16951278 exon RhoGAP15B + chrX 16951360 exon RhoGAP15B + chrX 16951441 exon RhoGAP15B + chrX_14_16950001 chrX_16950001 RAL-843 3821 chrX 16951339 16951347 chrX 16951402 16951472 6 108 6.5 10.0 8.2 0.7 133 chrX 16951339 exon RhoGAP15B + chrX 16951406 exon RhoGAP15B + chrX 16951472 exon RhoGAP15B + chrX_6_16950001 chrX_16950001 RAL-843 3822 chrX 16983076 16983076 chrX 19404963 19404964 5 2421887 39.5 16.0 27.8 0.2 2421888 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404964 intron kek5 + chrX_5_18190001 chrX_18190001 RAL-843 3823 chrX 17011925 17011936 chrX 17012058 17012068 5 133 17.0 5.5 11.2 0.4 143 chrX 17011925 intron CG45002 - chrX 17011996 intron CG45002 - chrX 17012068 intron CG45002 - chrX_5_17010001 chrX_17010001 RAL-843 3824 chrX 17011939 17011998 chrX 17012054 17012117 30 126 8.0 5.0 6.5 4.0 178 chrX 17011939 intron CG45002 - chrX 17012028 intron CG45002 - chrX 17012117 intron CG45002 - chrX_30_17010001 chrX_17010001 RAL-843 3825 chrX 17089570 17089623 chrX 17089746 17089799 23 175 7.5 7.0 7.2 2.8 229 chrX 17089570 intergenic not near genes chrX 17089684 intergenic not near genes chrX 17089799 intergenic not near genes chrX_23_17085001 chrX_17085001 RAL-843 3826 chrX 17111181 17111258 chrX 17111352 17111430 19 172 4.0 3.5 3.8 4.0 249 chrX 17111181 intron CG5004 + chrX 17111306 intron CG5004 + chrX 17111430 intron CG5004 + chrX_19_17110001 chrX_17110001 RAL-843 3827 chrX 17119717 17119726 chrX 17119861 17119870 4 144 0.0 4.5 2.2 1.2 153 chrX 17119717 intron CG5004 + chrX 17119794 intron CG5004 + chrX 17119870 intron CG5004 + chrX_4_17115001 chrX_17115001 RAL-843 3828 chrX 17122596 17122667 chrX 17122737 17122808 19 136 8.0 8.5 8.2 2.1 212 chrX 17122596 intron CG5004 + chrX 17122702 intron CG5004 + chrX 17122808 intron CG5004 + chrX_19_17120001 chrX_17120001 RAL-843 3829 chrX 17195165 17195233 chrX 17200301 17200304 flea 17 5132 8.0 10.5 9.2 1.7 5139 chrX 17195165 3` UTR baz + chrX 17197734 3` UTR baz + chrX 17200304 3` UTR baz + chrX_17_17195001 chrX_17195001 RAL-843 3830 chrX 17205801 17205857 chrX 17205941 17205997 30 139 7.5 7.0 7.2 3.7 196 chrX 17205801 intergenic not near genes chrX 17205899 intergenic not near genes chrX 17205997 intergenic CG32564 + chrX_30_17205001 chrX_17205001 RAL-843 3831 chrX 17237489 17237528 chrX 17237623 17237662 6 134 6.0 9.0 7.5 0.7 173 chrX 17237489 intron f + chrX 17237576 intron f + chrX 17237662 intron f + chrX_6_17235001 chrX_17235001 RAL-843 3832 chrX 17240980 17241016 chrX 17241098 17241147 9 124 11.0 5.5 8.2 1.0 167 chrX 17240980 intron,3` UTR f +,CG8915 - chrX 17241064 intron,3` UTR f +,CG8915 - chrX 17241147 intron,3` UTR f +,CG8915 - chrX_9_17240001 chrX_17240001 RAL-843 3833 chrX 17316329 17316353 chrX 17316463 17316487 5 133 10.0 0.0 5.0 0.8 158 chrX 17316329 intron B-H2 + chrX 17316408 intron B-H2 + chrX 17316487 intron B-H2 + chrX_5_17315001 chrX_17315001 RAL-843 3834 chrX 17352547 17352622 chrX 17352691 17352744 29 149 0.0 7.5 3.8 6.0 197 chrX 17352547 intergenic not near genes chrX 17352646 intergenic not near genes chrX 17352744 intergenic not near genes chrX_29_17350001 chrX_17350001 RAL-843 3835 chrX 17362444 17362507 chrX 17362586 17362649 15 142 6.0 1.0 3.5 3.3 205 chrX 17362444 intergenic not near genes chrX 17362546 intergenic not near genes chrX 17362649 intergenic not near genes chrX_15_17360001 chrX_17360001 RAL-843 3836 chrX 17372292 17372312 chrX 17372434 17372454 9 142 17.0 6.0 11.5 0.7 162 chrX 17372292 intergenic not near genes chrX 17372373 intergenic not near genes chrX 17372454 intergenic not near genes chrX_9_17370001 chrX_17370001 RAL-843 3837 chrX 17372317 17372355 chrX 17372426 17372496 12 134 10.0 5.0 7.5 1.4 179 chrX 17372317 intergenic not near genes chrX 17372406 intergenic not near genes chrX 17372496 intergenic not near genes chrX_12_17370001 chrX_17370001 RAL-843 3838 chrX 17431310 17431341 chrX 17431701 17431732 jockey 18 390 15.0 11.0 13.0 1.3 422 chrX 17431310 intron CG12994 - chrX 17431521 intron CG12994 - chrX 17431732 intron CG12994 - chrX_18_17430001 chrX_17430001 RAL-843 3839 chrX 17435719 17435777 chrX 17435848 17435906 12 129 12.0 13.0 12.5 0.9 187 chrX 17435719 intron CG12994 - chrX 17435812 intron CG12994 - chrX 17435906 intron CG12994 - chrX_12_17435001 chrX_17435001 RAL-843 3840 chrX 17443072 17443088 chrX 17443246 17443262 11 174 7.5 7.0 7.2 1.3 190 chrX 17443072 intron CG12994 - chrX 17443167 intron CG12994 - chrX 17443262 intron CG12994 - chrX_11_17440001 chrX_17440001 RAL-843 3841 chrX 17479890 17479899 chrX 17480017 17480026 4 126 15.5 14.5 15.0 0.2 136 chrX 17479890 intron CG43658 - chrX 17479958 intron CG43658 - chrX 17480026 intron CG43658 - chrX_4_17475001 chrX_17475001 RAL-843 3842 chrX 17479902 17479936 chrX 17480013 17480063 10 115 11.0 14.5 12.8 0.7 161 chrX 17479902 intron CG43658 - chrX 17479982 intron CG43658 - chrX 17480063 intron CG43658 - chrX_10_17475001 chrX_17475001 RAL-843 3843 chrX 17680884 17680904 chrX 17680986 17681030 8 124 13.0 9.5 11.2 0.7 146 chrX 17680884 intron chas - chrX 17680957 intron chas - chrX 17681030 intron chas - chrX_8_17680001 chrX_17680001 RAL-843 3844 chrX 17685410 17685464 chrX 17685543 17685597 11 133 2.0 1.5 1.8 3.9 187 chrX 17685410 intron chas - chrX 17685504 intron chas - chrX 17685597 intron chas - chrX_11_17685001 chrX_17685001 RAL-843 3845 chrX 17716544 17716554 chrX 17716681 17716691 4 137 4.5 8.5 6.5 0.5 147 chrX 17716544 intron CG42684 + chrX 17716618 intron CG42684 + chrX 17716691 intron CG42684 + chrX_4_17715001 chrX_17715001 RAL-843 3846 chrX 17716559 17716603 chrX 17716676 17716740 17 132 4.0 8.5 6.2 2.4 181 chrX 17716559 intron CG42684 + chrX 17716650 intron CG42684 + chrX 17716740 intron CG42684 + chrX_17_17715001 chrX_17715001 RAL-843 3847 chrX 17740355 17740365 chrX 17740454 17740468 4 108 13.5 12.5 13.0 0.3 113 chrX 17740355 intron CG42684 + chrX 17740412 intron CG42684 + chrX 17740468 intron CG42684 + chrX_4_17740001 chrX_17740001 RAL-843 3848 chrX 17740367 17740402 chrX 17740452 17740513 11 110 12.0 12.5 12.2 0.8 146 chrX 17740367 intron CG42684 + chrX 17740440 intron CG42684 + chrX 17740513 intron CG42684 + chrX_11_17740001 chrX_17740001 RAL-843 3849 chrX 17766330 17766339 chrX 17766478 17766487 5 148 10.0 7.0 8.5 0.5 157 chrX 17766330 intergenic not near genes chrX 17766408 intergenic not near genes chrX 17766487 intergenic not near genes chrX_5_17765001 chrX_17765001 RAL-843 3850 chrX 17766340 17766370 chrX 17766467 17766518 8 142 7.0 5.5 6.2 1.1 178 chrX 17766340 intergenic not near genes chrX 17766429 intergenic not near genes chrX 17766518 intergenic not near genes chrX_8_17765001 chrX_17765001 RAL-843 3851 chrX 17792925 17792940 chrX 17796265 17796285 flea 4 3343 12.0 13.5 12.8 0.3 3360 chrX 17792925 intron OdsH + chrX 17794605 intron OdsH + chrX 17796285 intron OdsH + chrX_4_17790001 chrX_17790001 RAL-843 3852 chrX 17911809 17911875 chrX 17911945 17912013 18 138 3.5 3.0 3.2 4.3 204 chrX 17911809 intron CG6847 + chrX 17911911 intron CG6847 + chrX 17912013 intron CG6847 + chrX_18_17910001 chrX_17910001 RAL-843 3853 chrX 18126780 18126834 chrX 18126907 18126961 12 125 4.5 6.0 5.2 1.9 181 chrX 18126780 intron CG32553 - chrX 18126870 5` UTR CG32553 - chrX 18126961 5` UTR CG32553 - chrX_12_18125001 chrX_18125001 RAL-843 3854 chrX 18194023 18194100 chrX 18194608 18194641 BS 30 581 6.0 11.0 8.5 3.2 618 chrX 18194023 intron Frq2 + chrX 18194332 intron Frq2 + chrX 18194641 intron Frq2 + chrX_30_18190001 chrX_18190001 RAL-843 3855 chrX 18218010 18218063 chrX 18218177 18218230 24 167 11.0 12.5 11.8 1.9 220 chrX 18218010 intron CG33639 - chrX 18218120 intron CG33639 - chrX 18218230 intron CG33639 - chrX_24_18215001 chrX_18215001 RAL-843 3856 chrX 18335466 18335499 chrX 18335591 18335602 15 122 12.5 18.0 15.2 0.9 136 chrX 18335466 intron CG6123 - chrX 18335534 intron CG6123 - chrX 18335602 intron CG6123 - chrX_15_18335001 chrX_18335001 RAL-843 3857 chrX 18341576 18341654 chrX 18342001 18342072 35 416 9.5 4.5 7.0 4.4 496 chrX 18341576 intron CG6123 - chrX 18341824 intron CG6123 - chrX 18342072 intron CG6123 - chrX_35_18340001 chrX_18340001 RAL-843 3858 chrX 18349959 18350036 chrX 18350094 18350143 22 132 4.5 3.0 3.8 4.6 184 chrX 18349959 intron CG6123 - chrX 18350051 intron CG6123 - chrX 18350143 intron CG6123 - chrX_22_18350001 chrX_18350001 RAL-843 3859 chrX 18427334 18427408 chrX 18427795 18427869 18 461 9.0 7.0 8.0 2.0 535 chrX 18427334 intergenic CG42323 + chrX 18427602 intergenic not near genes chrX 18427869 intergenic not near genes chrX_18_18425001 chrX_18425001 RAL-843 3860 chrX 18429449 18429517 chrX 18434809 18434878 Transpac 19 5361 8.0 7.5 7.8 2.2 5429 chrX 18429449 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434878 intergenic not near genes chrX_19_18430001 chrX_18430001 RAL-843 3861 chrX 18455184 18455234 chrX 18455314 18455364 15 130 4.5 5.0 4.8 2.6 180 chrX 18455184 intron CG32547 - chrX 18455274 intron CG32547 - chrX 18455364 intron CG32547 - chrX_15_18455001 chrX_18455001 RAL-843 3862 chrX 18474269 18474307 chrX 18474402 18474420 8 127 8.5 0.0 4.2 1.5 151 chrX 18474269 intron CG32547 - chrX 18474344 intron CG32547 - chrX 18474420 intron CG32547 - chrX_8_18470001 chrX_18470001 RAL-843 3863 chrX 18486089 18486137 chrX 18486202 18486264 22 133 3.0 12.5 7.8 2.5 175 chrX 18486089 exon psh - chrX 18486176 intron psh - chrX 18486264 intron psh - chrX_22_18485001 chrX_18485001 RAL-843 3864 chrX 18490001 18490026 chrX 18490206 18490231 17 203 13.0 5.0 9.0 1.7 230 chrX 18490001 intergenic CG15046 - chrX 18490116 intergenic CG15046 - chrX 18490231 intergenic not near genes chrX_17_18490001 chrX_18490001 RAL-843 3865 chrX 18490030 18490057 chrX 18490199 18490262 9 193 7.0 5.0 6.0 1.3 232 chrX 18490030 intergenic CG15046 - chrX 18490146 intergenic not near genes chrX 18490262 intergenic not near genes chrX_9_18490001 chrX_18490001 RAL-843 3866 chrX 18558758 18558807 chrX 18558890 18558938 19 131 3.0 9.5 6.2 2.6 180 chrX 18558758 intron Bx + chrX 18558848 intron Bx + chrX 18558938 intron Bx + chrX_19_18555001 chrX_18555001 RAL-843 3867 chrX 12946233 12946235 chrX 18572525 18572525 8 5626291 19.0 36.5 27.8 0.3 5626292 chrX 12946233 3` UTR fne + chrX 15759379 intron Graf - chrX 18572525 intergenic not near genes chrX_8_15755001 chrX_15755001 RAL-843 3868 chrX 18644975 18644999 chrX 18645123 18645147 16 147 18.0 9.0 13.5 1.1 172 chrX 18644975 intron Rip11 - chrX 18645061 intron Rip11 - chrX 18645147 intron Rip11 - chrX_16_18645001 chrX_18645001 RAL-843 3869 chrX 18645000 18645040 chrX 18645121 18645187 22 145 8.0 8.0 8.0 2.4 187 chrX 18645000 intron Rip11 - chrX 18645094 intron Rip11 - chrX 18645187 intron Rip11 - chrX_22_18645001 chrX_18645001 RAL-843 3870 chrX 18671176 18671241 chrX 18671308 18671373 8 132 5.0 6.0 5.5 1.2 197 chrX 18671176 intergenic not near genes chrX 18671274 intergenic not near genes chrX 18671373 intergenic not near genes chrX_8_18670001 chrX_18670001 RAL-843 3871 chrX 18698797 18698878 chrX 18698964 18699045 32 165 5.5 5.0 5.2 5.2 248 chrX 18698797 intergenic not near genes chrX 18698921 intergenic not near genes chrX 18699045 intergenic not near genes chrX_32_18695001 chrX_18695001 RAL-843 3872 chrX 18749826 18749891 chrX 18749960 18750025 33 134 7.0 7.5 7.2 4.0 199 chrX 18749826 intergenic not near genes chrX 18749926 intergenic not near genes chrX 18750025 intergenic not near genes chrX_33_18745001 chrX_18745001 RAL-843 3873 chrX 18753296 18753336 chrX 18753419 18753465 15 124 7.5 9.5 8.5 1.6 169 chrX 18753296 intergenic not near genes chrX 18753380 intergenic not near genes chrX 18753465 intergenic not near genes chrX_15_18750001 chrX_18750001 RAL-843 3874 chrX 18801419 18801461 chrX 18801539 18801550 9 107 10.5 7.0 8.8 0.9 131 chrX 18801419 intron Pk17E + chrX 18801484 intron Pk17E + chrX 18801550 intron Pk17E + chrX_9_18800001 chrX_18800001 RAL-843 3875 chrX 18888604 18888613 chrX 18888741 18888750 5 136 15.5 9.0 12.2 0.4 146 chrX 18888604 3` UTR CG7332 + chrX 18888677 3` UTR CG7332 + chrX 18888750 3` UTR CG7332 + chrX_5_18885001 chrX_18885001 RAL-843 3876 chrX 18888615 18888687 chrX 18888740 18888822 18 134 4.0 9.0 6.5 2.4 207 chrX 18888615 3` UTR CG7332 + chrX 18888718 3` UTR CG7332 + chrX 18888822 3` UTR CG7332 + chrX_18_18885001 chrX_18885001 RAL-843 3877 chrX 18896470 18896548 chrX 18896631 18896709 14 161 3.0 6.0 4.5 2.5 239 chrX 18896470 3` UTR CG7349 + chrX 18896590 intergenic CG7349 + chrX 18896709 intergenic CG7349 + chrX_14_18895001 chrX_18895001 RAL-843 3878 chrX 18910347 18910407 chrX 18910487 18910547 18 137 8.0 9.5 8.8 1.8 200 chrX 18910347 3` UTR CG7378 + chrX 18910447 3` UTR CG7378 + chrX 18910547 3` UTR CG7378 + chrX_18_18910001 chrX_18910001 RAL-843 3879 chrX 18946147 18946179 chrX 18946284 18946316 9 137 5.0 5.0 5.0 1.5 169 chrX 18946147 intron CG43759 + chrX 18946232 intron CG43759 + chrX 18946316 intron CG43759 + chrX_9_18945001 chrX_18945001 RAL-843 3880 chrX 18947457 18947530 chrX 18947600 18947665 32 142 10.5 12.0 11.2 2.6 208 chrX 18947457 intron CG43759 + chrX 18947561 intron CG43759 + chrX 18947665 intron CG43759 + chrX_32_18945001 chrX_18945001 RAL-843 3881 chrX 18953293 18953353 chrX 18953451 18953511 8 158 5.0 4.5 4.8 1.4 218 chrX 18953293 intron CG43759 + chrX 18953402 intron CG43759 + chrX 18953511 intron CG43759 + chrX_8_18950001 chrX_18950001 RAL-843 3882 chrX 18957025 18957092 chrX 18965738 18965805 roo 14 8712 6.5 4.5 5.5 2.2 8780 chrX 18957025 intron CG43759 + chrX 18961415 intron CG43759 + chrX 18965805 intron CG43759 + chrX_14_18960001 chrX_18960001 RAL-843 3883 chrX 18994413 18994463 chrX 18994540 18994591 15 123 12.0 14.0 13.0 1.1 178 chrX 18994413 intron CG43759 + chrX 18994502 intron CG43759 + chrX 18994591 intron CG43759 + chrX_15_18990001 chrX_18990001 RAL-843 3884 chrX 19060368 19060429 chrX 19065202 19065263 Doc 20 4834 11.5 14.0 12.8 1.4 4895 chrX 19060368 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065263 intron CG14190 + chrX_20_19060001 chrX_19060001 RAL-843 3885 chrX 19084043 19084105 chrX 19084213 19084275 7 170 3.0 0.0 1.5 2.8 232 chrX 19084043 intergenic CR45503 + chrX 19084159 intergenic CR45503 + chrX 19084275 intergenic CR45503 + chrX_7_19080001 chrX_19080001 RAL-843 3886 chrX 19099608 19099685 chrX 19099741 19099807 35 132 7.5 5.0 6.2 4.9 199 chrX 19099608 intergenic not near genes chrX 19099708 intergenic not near genes chrX 19099807 intergenic not near genes chrX_35_19095001 chrX_19095001 RAL-843 3887 chrX 19106778 19106802 chrX 19106904 19106912 10 122 14.0 5.5 9.8 0.9 134 chrX 19106778 intergenic not near genes chrX 19106845 intergenic not near genes chrX 19106912 intergenic not near genes chrX_10_19105001 chrX_19105001 RAL-843 3888 chrX 19124385 19124460 chrX 19124523 19124599 16 136 5.5 4.0 4.8 2.8 214 chrX 19124385 5` UTR CG15882 - chrX 19124492 intergenic CG15882 - chrX 19124599 intergenic CG15882 -,tgy - chrX_16_19120001 chrX_19120001 RAL-843 3889 chrX 19125646 19125719 chrX 19125823 19125898 25 177 11.5 8.0 9.8 2.3 252 chrX 19125646 intron tgy - chrX 19125772 intron tgy - chrX 19125898 intron tgy - chrX_25_19125001 chrX_19125001 RAL-843 3890 chrX 19136507 19136567 chrX 19143477 19143537 412 19 6968 6.0 0.5 3.2 4.5 7030 chrX 19136507 intergenic not near genes chrX 19140022 intergenic not near genes chrX 19143537 3` UTR RhoGAP18B - chrX_19_19140001 chrX_19140001 RAL-843 3891 chrX 19147594 19147668 chrX 19147817 19147890 16 218 5.0 3.5 4.2 3.1 296 chrX 19147594 intron RhoGAP18B - chrX 19147742 intron RhoGAP18B - chrX 19147890 intron RhoGAP18B - chrX_16_19145001 chrX_19145001 RAL-843 3892 chrX 19170550 19170569 chrX 19170677 19170696 4 127 16.5 12.0 14.2 0.3 146 chrX 19170550 5` UTR Inx5 - chrX 19170623 5` UTR Inx5 - chrX 19170696 5` UTR Inx5 - chrX_4_19170001 chrX_19170001 RAL-843 3893 chrX 19170572 19170601 chrX 19170673 19170728 11 120 11.0 13.0 12.0 0.8 156 chrX 19170572 5` UTR Inx5 - chrX 19170650 5` UTR Inx5 - chrX 19170728 5` UTR Inx5 - chrX_11_19170001 chrX_19170001 RAL-843 3894 chrX 19181990 19182047 chrX 19182152 19182204 7 160 2.0 3.0 2.5 2.0 214 chrX 19181990 3` UTR CG7453 + chrX 19182097 intergenic CG7453 + chrX 19182204 intergenic CG7453 + chrX_7_19180001 chrX_19180001 RAL-843 3895 chrX 19356951 19357006 chrX 19358442 19358497 NOF 23 1491 13.0 12.0 12.5 1.7 1546 chrX 19356951 intron kek5 + chrX 19357724 intron kek5 + chrX 19358497 intron kek5 + chrX_23_19355001 chrX_19355001 RAL-843 3896 chrX 19380114 19380180 chrX 19380405 19380471 pogo 28 290 14.5 9.0 11.8 2.2 357 chrX 19380114 intron kek5 + chrX 19380292 intron kek5 + chrX 19380471 intron kek5 + chrX_28_19380001 chrX_19380001 RAL-843 3897 chrX 19406807 19406872 chrX 19406945 19407009 12 131 6.5 10.0 8.2 1.3 202 chrX 19406807 intron kek5 + chrX 19406908 intron kek5 + chrX 19407009 intron kek5 + chrX_12_19405001 chrX_19405001 RAL-843 3898 chrX 19472081 19472156 chrX 19472701 19472760 jockey 28 615 3.5 13.5 8.5 2.9 679 chrX 19472081 intergenic kek5 + chrX 19472420 intergenic not near genes chrX 19472760 intergenic not near genes chrX_28_19470001 chrX_19470001 RAL-843 3899 chrX 19500512 19500749 chrX 19500634 19500856 57 130 5.0 8.0 6.5 7.6 344 chrX 19500512 intron,intron CG14200 +,Pfrx + chrX 19500684 intron,intron CG14200 +,Pfrx + chrX 19500856 intron,intron CG14200 +,Pfrx + chrX_57_19500001 chrX_19500001 RAL-843 3900 chrX 19593904 19593975 chrX 19594039 19594110 32 134 10.0 7.0 8.5 3.4 206 chrX 19593904 exon CG14205 + chrX 19594007 intron CG14205 + chrX 19594110 exon CG14205 + chrX_32_19590001 chrX_19590001 RAL-843 3901 chrX 19595681 19595743 chrX 19595820 19595882 18 139 4.5 0.0 2.2 5.6 201 chrX 19595681 intergenic CG14205 + chrX 19595782 intergenic CG14205 + chrX 19595882 intergenic CG14205 + chrX_18_19595001 chrX_19595001 RAL-843 3902 chrX 19661982 19662057 chrX 19662255 19662328 27 272 3.5 6.5 5.0 4.5 346 chrX 19661982 intron CG14223 - chrX 19662155 intron CG14223 - chrX 19662328 intron CG14223 - chrX_27_19660001 chrX_19660001 RAL-843 3903 chrX 19710029 19710036 chrX 19711865 19711866 S-element 5 1835 27.5 14.5 21.0 0.2 1837 chrX 19710029 intron meso18E - chrX 19710948 intron meso18E - chrX 19711866 intron meso18E - chrX_5_19710001 chrX_19710001 RAL-843 3904 chrX 19710039 19710096 chrX 19711863 19711927 S-element 25 1832 9.5 12.5 11.0 2.1 1888 chrX 19710039 intron meso18E - chrX 19710983 intron meso18E - chrX 19711927 intron meso18E - chrX_25_19710001 chrX_19710001 RAL-843 3905 chrX 19756076 19756104 chrX 19756212 19756239 8 131 15.0 1.5 8.2 0.9 163 chrX 19756076 intron Pmp70 + chrX 19756158 intron Pmp70 + chrX 19756239 intron Pmp70 + chrX_8_19755001 chrX_19755001 RAL-843 3906 chrX 19791209 19791288 chrX 19791353 19791432 20 144 4.0 2.0 3.0 5.0 223 chrX 19791209 intergenic not near genes chrX 19791320 intergenic not near genes chrX 19791432 intergenic not near genes chrX_20_19790001 chrX_19790001 RAL-843 3907 chrX 19797305 19797340 chrX 19804670 19804705 Stalker4 11 7363 14.0 8.5 11.2 0.9 7400 chrX 19797305 intergenic not near genes chrX 19801005 intergenic not near genes chrX 19804705 intergenic not near genes chrX_11_19800001 chrX_19800001 RAL-843 3908 chrX 19844806 19844871 chrX 19845181 19845247 29 374 14.5 9.5 12.0 2.2 441 chrX 19844806 intron pico - chrX 19845026 intron pico - chrX 19845247 intron pico - chrX_29_19845001 chrX_19845001 RAL-843 3909 chrX 19884047 19884113 chrX 19884171 19884228 15 118 8.0 11.0 9.5 1.4 181 chrX 19884047 intron Hers + chrX 19884138 intron Hers + chrX 19884228 intron Hers + chrX_15_19880001 chrX_19880001 RAL-843 3910 chrX 19897341 19897407 chrX 19897468 19897534 35 127 6.0 3.0 4.5 6.4 193 chrX 19897341 intron Hers + chrX 19897438 intron Hers + chrX 19897534 intron Hers + chrX_35_19895001 chrX_19895001 RAL-843 3911 chrX 19971772 19971826 chrX 19971899 19971948 19 126 9.5 12.0 10.8 1.6 176 chrX 19971772 intergenic not near genes chrX 19971860 intergenic not near genes chrX 19971948 intergenic not near genes chrX_19_19970001 chrX_19970001 RAL-843 3912 chrX 19983853 19983871 chrX 19983983 19984001 13 130 0.0 1.0 0.5 8.7 148 chrX 19983853 intergenic not near genes chrX 19983927 intergenic not near genes chrX 19984001 intergenic not near genes chrX_13_19980001 chrX_19980001 RAL-843 3913 chrX 19992366 19992434 chrX 19992492 19992550 17 120 11.5 10.5 11.0 1.4 184 chrX 19992366 intergenic not near genes chrX 19992458 intergenic not near genes chrX 19992550 intergenic not near genes chrX_17_19990001 chrX_19990001 RAL-843 3914 chrX 20122493 20122570 chrX 20122653 20122705 20 142 8.0 5.5 6.8 2.6 212 chrX 20122493 exon CG34331 + chrX 20122599 exon CG34331 + chrX 20122705 intron CG34331 + chrX_20_20120001 chrX_20120001 RAL-843 3915 chrX 20122988 20123066 chrX 20123155 20123233 30 166 3.0 3.5 3.2 7.1 245 chrX 20122988 intron CG34331 + chrX 20123110 intron CG34331 + chrX 20123233 intron CG34331 + chrX_30_20120001 chrX_20120001 RAL-843 3916 chrX 20125359 20125398 chrX 20125491 20125530 18 130 1.0 16.5 8.8 1.8 171 chrX 20125359 intergenic CG34331 + chrX 20125444 intergenic CG34331 + chrX 20125530 intergenic CG34331 + chrX_18_20125001 chrX_20125001 RAL-843 3917 chrX 20125721 20125756 chrX 20125838 20125883 8 122 15.5 14.0 14.8 0.5 162 chrX 20125721 intergenic CG34331 + chrX 20125802 intergenic not near genes chrX 20125883 intergenic not near genes chrX_8_20125001 chrX_20125001 RAL-843 3918 chrX 20132253 20132291 chrX 20132386 20132424 16 132 16.0 5.5 10.8 1.4 171 chrX 20132253 intergenic not near genes chrX 20132338 intergenic not near genes chrX 20132424 intergenic not near genes chrX_16_20130001 chrX_20130001 RAL-843 3919 chrX 20263392 20263434 chrX 20263524 20263555 9 132 9.0 3.5 6.2 1.2 163 chrX 20263392 intergenic not near genes chrX 20263474 intergenic not near genes chrX 20263555 intergenic not near genes chrX_9_20260001 chrX_20260001 RAL-843 3920 chrX 20271454 20271526 chrX 20271596 20271663 12 141 5.0 0.0 2.5 3.4 209 chrX 20271454 intergenic not near genes chrX 20271558 intergenic not near genes chrX 20271663 intergenic not near genes chrX_12_20270001 chrX_20270001 RAL-843 3921 chrX 20274480 20274484 chrX 20288947 20288961 4 14470 54.0 61.5 57.8 0.1 14481 chrX 20274480 intergenic not near genes chrX 20281720 intergenic not near genes chrX 20288961 intergenic not near genes chrX_4_20280001 chrX_20280001 RAL-843 3922 chrX 20312833 20312911 chrX 20312961 20313039 29 127 9.0 6.5 7.8 3.3 206 chrX 20312833 intron CG1504 - chrX 20312936 intron CG1504 - chrX 20313039 intron CG1504 - chrX_29_20310001 chrX_20310001 RAL-843 3923 chrX 20320251 20320302 chrX 20320378 20320429 11 127 8.5 5.0 6.8 1.4 178 chrX 20320251 intron CG1504 - chrX 20320340 intron CG1504 - chrX 20320429 intron CG1504 - chrX_11_20320001 chrX_20320001 RAL-843 3924 chrX 20377272 20377344 chrX 20378789 20378838 hobo 13 1508 9.0 7.5 8.2 1.4 1566 chrX 20377272 intergenic not near genes chrX 20378055 intergenic not near genes chrX 20378838 intergenic not near genes chrX_13_20375001 chrX_20375001 RAL-843 3925 chrX 20426187 20426235 chrX 20428343 20428403 25 2169 64.0 56.5 60.2 0.4 2216 chrX 20426187 exon cactin + chrX 20427295 intergenic CG11710 -,CG15456 - chrX 20428403 exon CG11710 - chrX_25_20425001 chrX_20425001 RAL-843 3926 chrX 20443160 20443203 chrX 20443286 20443329 16 126 7.0 8.5 7.8 1.8 169 chrX 20443160 exon CG1695 + chrX 20443244 intron CG1695 + chrX 20443329 intron CG1695 + chrX_16_20440001 chrX_20440001 RAL-843 3927 chrX 20467969 20468038 chrX 20468108 20468164 14 131 3.0 0.0 1.5 5.6 195 chrX 20467969 intron GstT3 + chrX 20468066 intron GstT3 + chrX 20468164 intron GstT3 + chrX_14_20465001 chrX_20465001 RAL-843 3928 chrX 20476910 20476974 chrX 20477050 20477114 21 137 10.5 9.0 9.8 1.9 204 chrX 20476910 intron RhoGAP19D - chrX 20477012 intron RhoGAP19D - chrX 20477114 intron RhoGAP19D - chrX_21_20475001 chrX_20475001 RAL-843 3929 chrX 20493874 20493930 chrX 20494083 20494141 10 210 0.0 12.0 6.0 1.4 267 chrX 20493874 intron RhoGAP19D - chrX 20494008 intron RhoGAP19D - chrX 20494141 intron RhoGAP19D - chrX_10_20490001 chrX_20490001 RAL-843 3930 chrX 20527932 20527943 chrX 20528075 20528086 5 143 0.0 18.0 9.0 0.5 154 chrX 20527932 exon CG42579 + chrX 20528009 3` UTR CG42579 + chrX 20528086 intergenic CG42579 + chrX_5_20525001 chrX_20525001 RAL-843 3931 chrX 20531713 20531788 chrX 20531863 20531937 18 149 0.0 7.0 3.5 4.0 224 chrX 20531713 intergenic not near genes chrX 20531825 intergenic not near genes chrX 20531937 intergenic not near genes chrX_18_20530001 chrX_20530001 RAL-843 3932 chrX 20541324 20541328 chrX 20541471 20541501 4 162 2.0 0.0 1.0 2.0 177 chrX 20541324 intron RunxB + chrX 20541412 intron RunxB + chrX 20541501 intron RunxB + chrX_4_20540001 chrX_20540001 RAL-843 3933 chrX 20546503 20546562 chrX 20546719 20546758 30 215 5.0 5.0 5.0 5.0 255 chrX 20546503 intron RunxB + chrX 20546630 intron RunxB + chrX 20546758 intron RunxB + chrX_30_20545001 chrX_20545001 RAL-843 3934 chrX 20594259 20594269 chrX 20594395 20594405 6 135 9.0 10.0 9.5 0.6 146 chrX 20594259 intron RunxA - chrX 20594332 intron RunxA - chrX 20594405 intron RunxA - chrX_6_20590001 chrX_20590001 RAL-843 3935 chrX 20594271 20594327 chrX 20594392 20594440 18 123 3.0 9.5 6.2 2.5 169 chrX 20594271 intron RunxA - chrX 20594356 intron RunxA - chrX 20594440 intron RunxA - chrX_18_20590001 chrX_20590001 RAL-843 3936 chrX 20634409 20634454 chrX 20634520 20634577 11 123 6.0 7.5 6.8 1.4 168 chrX 20634409 intergenic not near genes chrX 20634493 intergenic not near genes chrX 20634577 intergenic not near genes chrX_11_20630001 chrX_20630001 RAL-843 3937 chrX 20662270 20662340 chrX 20662403 20662462 13 128 5.0 5.0 5.0 2.2 192 chrX 20662270 intron CG1835 + chrX 20662366 intron CG1835 + chrX 20662462 intron CG1835 + chrX_13_20660001 chrX_20660001 RAL-843 3938 chrX 20710411 20710419 chrX 20710538 20710546 4 127 5.0 1.5 3.2 1.0 135 chrX 20710411 intergenic not near genes chrX 20710478 intergenic not near genes chrX 20710546 intergenic not near genes chrX_4_20710001 chrX_20710001 RAL-843 3939 chrX 20751276 20751323 chrX 20751412 20751459 15 136 3.5 7.5 5.5 2.3 183 chrX 20751276 intergenic not near genes chrX 20751368 intergenic not near genes chrX 20751459 intergenic not near genes chrX_15_20750001 chrX_20750001 RAL-843 3940 chrX 20769756 20769824 chrX 20769889 20769957 23 133 5.5 7.0 6.2 3.2 201 chrX 20769756 3` UTR shakB - chrX 20769856 3` UTR shakB - chrX 20769957 3` UTR shakB - chrX_23_20765001 chrX_20765001 RAL-843 3941 chrX 20776796 20776832 chrX 20776990 20777026 15 194 6.0 12.0 9.0 1.5 230 chrX 20776796 intron shakB - chrX 20776911 intron shakB - chrX 20777026 intron shakB - chrX_15_20775001 chrX_20775001 RAL-843 3942 chrX 20810673 20810743 chrX 20810801 20810871 4 128 2.5 4.0 3.2 1.0 198 chrX 20810673 intron shakB - chrX 20810772 intron shakB - chrX 20810871 intron shakB - chrX_4_20810001 chrX_20810001 RAL-843 3943 chrX 20836684 20836753 chrX 20844336 20844405 roo 26 7652 4.5 5.0 4.8 4.5 7721 chrX 20836684 intron shakB - chrX 20840544 intron shakB - chrX 20844405 intron shakB - chrX_26_20840001 chrX_20840001 RAL-843 3944 chrX 20911875 20911908 chrX 20912002 20912016 11 121 10.0 7.0 8.5 1.2 141 chrX 20911875 intron shakB - chrX 20911946 intron shakB - chrX 20912016 intron shakB - chrX_11_20910001 chrX_20910001 RAL-843 3945 chrX 20940677 20940731 chrX 20942196 20942234 hobo 22 1517 8.0 8.0 8.0 2.4 1557 chrX 20940677 intergenic not near genes chrX 20941456 intergenic not near genes chrX 20942234 intergenic not near genes chrX_22_20940001 chrX_20940001 RAL-843 3946 chrX 20956922 20956953 chrX 20962417 20962443 I-element 15 5494 0.5 2.5 1.5 6.0 5521 chrX 20956922 intergenic not near genes chrX 20959682 intergenic not near genes chrX 20962443 intergenic Ser6 - chrX_15_20955001 chrX_20955001 RAL-843 3947 chrX 20980988 20981053 chrX 20981141 20981206 11 153 5.5 6.0 5.8 1.6 218 chrX 20980988 intergenic not near genes chrX 20981097 intergenic not near genes chrX 20981206 intergenic not near genes chrX_11_20980001 chrX_20980001 RAL-843 3948 chrX 20992338 20992355 chrX 20992473 20992488 5 133 0.0 2.5 1.2 2.3 150 chrX 20992338 intergenic not near genes chrX 20992413 intergenic not near genes chrX 20992488 intergenic not near genes chrX_5_20990001 chrX_20990001 RAL-843 3949 chrX 21008613 21008686 chrX 21008751 21008823 16 138 5.0 5.5 5.2 2.6 210 chrX 21008613 intergenic not near genes chrX 21008718 intergenic not near genes chrX 21008823 intergenic not near genes chrX_16_21005001 chrX_21005001 RAL-843 3950 chrX 21009818 21009843 chrX 21009976 21010001 8 158 0.5 5.5 3.0 2.0 183 chrX 21009818 intergenic not near genes chrX 21009910 intergenic not near genes chrX 21010001 intergenic not near genes chrX_8_21005001 chrX_21005001 RAL-843 3951 chrX 21022189 21022191 chrX 21022408 21022410 5 219 9.0 4.0 6.5 0.7 221 chrX 21022189 intergenic not near genes chrX 21022300 intergenic not near genes chrX 21022410 intergenic not near genes chrX_5_21020001 chrX_21020001 RAL-843 3952 chrX 21022194 21022218 chrX 21022403 21022437 10 218 5.5 3.0 4.2 1.9 243 chrX 21022194 intergenic not near genes chrX 21022316 intergenic not near genes chrX 21022437 intergenic not near genes chrX_10_21020001 chrX_21020001 RAL-843 3953 chrX 21029101 21029178 chrX 21029368 21029445 9 266 2.0 7.5 4.8 1.6 344 chrX 21029101 3` UTR CG1529 - chrX 21029273 3` UTR CG1529 - chrX 21029445 3` UTR CG1529 - chrX_9_21025001 chrX_21025001 RAL-843 3954 chrX 21029747 21029801 chrX 21029938 21029992 9 191 1.5 6.0 3.8 1.9 245 chrX 21029747 3` UTR CG1529 - chrX 21029870 3` UTR CG1529 - chrX 21029992 3` UTR CG1529 - chrX_9_21025001 chrX_21025001 RAL-843 3955 chrX 21061814 21061831 chrX 21062353 21062370 roo 6 539 17.0 6.5 11.8 0.5 556 chrX 21061814 intron bves + chrX 21062092 intron bves + chrX 21062370 intron,3` UTR bves +,CG32512 - chrX_6_21060001 chrX_21060001 RAL-843 3956 chrX 21061834 21061889 chrX 21062350 21062424 roo 14 531 7.0 6.5 6.8 1.8 590 chrX 21061834 intron bves + chrX 21062129 intron bves + chrX 21062424 intron,3` UTR bves +,CG32512 - chrX_14_21060001 chrX_21060001 RAL-843 3957 chrX 21076282 21076335 chrX 21076411 21076464 25 129 8.5 0.5 4.5 4.5 182 chrX 21076282 intron bves + chrX 21076373 intron bves + chrX 21076464 intron bves + chrX_25_21075001 chrX_21075001 RAL-843 3958 chrX 21078720 21078776 chrX 21078848 21078903 22 127 7.0 0.5 3.8 4.6 183 chrX 21078720 intron bves + chrX 21078812 intron bves + chrX 21078903 intron bves + chrX_22_21075001 chrX_21075001 RAL-843 3959 chrX 21086094 21086149 chrX 21087173 21087228 jockey 25 1078 6.5 7.0 6.8 3.2 1134 chrX 21086094 intergenic not near genes chrX 21086661 intergenic not near genes chrX 21087228 intergenic not near genes chrX_25_21085001 chrX_21085001 RAL-843 3960 chrX 21087998 21088056 chrX 21088180 21088232 16 182 9.0 2.5 5.8 2.4 234 chrX 21087998 intergenic not near genes chrX 21088115 intergenic not near genes chrX 21088232 intergenic not near genes chrX_16_21085001 chrX_21085001 RAL-843 3961 chrX 21118025 21118084 chrX 21118171 21118230 7 144 2.5 6.5 4.5 1.3 205 chrX 21118025 intron CG15445 + chrX 21118128 intron CG15445 + chrX 21118230 intron CG15445 + chrX_7_21115001 chrX_21115001 RAL-843 3962 chrX 21190496 21190789 chrX 21190702 21190920 4 146 0.5 0.0 0.2 3.3 424 chrX 21190496 intergenic not near genes chrX 21190708 intergenic not near genes chrX 21190920 intergenic not near genes chrX_4_21190001 chrX_21190001 RAL-843 3963 chrX 21190796 21190821 chrX 21190927 21190952 5 125 0.5 17.0 8.8 0.5 156 chrX 21190796 intergenic not near genes chrX 21190874 intergenic not near genes chrX 21190952 intergenic not near genes chrX_5_21190001 chrX_21190001 RAL-843 3964 chrX 21241702 21241719 chrX 21241853 21241870 9 151 5.5 0.0 2.8 2.4 168 chrX 21241702 intron CG32521 - chrX 21241786 intron CG32521 - chrX 21241870 intron CG32521 - chrX_9_21240001 chrX_21240001 RAL-843 3965 chrX 21255445 21255507 chrX 21255621 21255657 23 171 4.5 0.0 2.2 7.2 212 chrX 21255445 intron CG32521 - chrX 21255551 intron CG32521 - chrX 21255657 intron CG32521 - chrX_23_21255001 chrX_21255001 RAL-843 3966 chrX 21268018 21268086 chrX 21268149 21268217 22 130 4.0 6.5 5.2 3.5 199 chrX 21268018 intron CG32521 - chrX 21268118 intron CG32521 - chrX 21268217 intron CG32521 - chrX_22_21265001 chrX_21265001 RAL-843 3967 chrX 21328069 21328147 chrX 21328230 21328309 12 161 5.5 0.0 2.8 3.2 240 chrX 21328069 3` UTR CG1486 + chrX 21328189 intergenic CG1486 +,tty - chrX 21328309 intergenic CG1486 +,tty - chrX_12_21325001 chrX_21325001 RAL-843 3968 chrX 21358028 21358096 chrX 21358158 21358226 20 130 8.5 11.5 10.0 1.8 198 chrX 21358028 intergenic sol +,Sep1 + chrX 21358127 intergenic Sep1 +,sol + chrX 21358226 intergenic Sep1 +,sol + chrX_20_21355001 chrX_21355001 RAL-843 3969 chrX 21388348 21388395 chrX 21388555 21388602 12 207 3.0 1.5 2.2 3.8 254 chrX 21388348 intergenic Hlc - chrX 21388475 intergenic not near genes chrX 21388602 intergenic mst + chrX_12_21385001 chrX_21385001 RAL-843 3970 chrX 21403787 21403861 chrX 21403918 21403992 34 130 12.0 6.5 9.2 3.3 205 chrX 21403787 intergenic not near genes chrX 21403890 intergenic not near genes chrX 21403992 intergenic not near genes chrX_34_21400001 chrX_21400001 RAL-843 3971 chrX 21410640 21410671 chrX 21410769 21410800 7 129 0.5 10.5 5.5 1.1 160 chrX 21410640 intergenic CR45003 - chrX 21410720 intergenic CR45003 - chrX 21410800 intergenic CR45003 - chrX_7_21410001 chrX_21410001 RAL-843 3972 chrX 21429959 21430025 chrX 21430087 21430153 17 128 4.5 5.0 4.8 2.9 194 chrX 21429959 intron CG42343 - chrX 21430056 intron CG42343 - chrX 21430153 intron CG42343 - chrX_17_21430001 chrX_21430001 RAL-843 3973 chrX 21454815 21454871 chrX 21454949 21455005 19 134 4.5 8.5 6.5 2.5 190 chrX 21454815 intron CG42343 - chrX 21454910 intron CG42343 - chrX 21455005 intron CG42343 - chrX_19_21450001 chrX_21450001 RAL-843 3974 chrX 21455202 21455245 chrX 21455439 21455482 13 235 4.5 12.5 8.5 1.4 280 chrX 21455202 intron CG42343 - chrX 21455342 intron CG42343 - chrX 21455482 intron CG42343 - chrX_13_21455001 chrX_21455001 RAL-843 3975 chrX 21458640 21458718 chrX 21464126 21464204 Ivk 16 5486 4.5 3.0 3.8 3.3 5564 chrX 21458640 intergenic not near genes chrX 21461422 intergenic not near genes chrX 21464204 intergenic not near genes chrX_16_21460001 chrX_21460001 RAL-843 3976 chrX 21474368 21474432 chrX 21474779 21474848 1731 15 416 7.5 7.0 7.2 1.8 480 chrX 21474368 intergenic not near genes chrX 21474608 intergenic not near genes chrX 21474848 intergenic not near genes chrX_15_21470001 chrX_21470001 RAL-843 3977 chrX 21516942 21516955 chrX 21517071 21517079 10 128 23.0 4.5 13.8 0.7 137 chrX 21516942 intron CR45082 - chrX 21517010 intron CR45082 - chrX 21517079 intron CR45082 - chrX_10_21515001 chrX_21515001 RAL-843 3978 chrX 21516958 21517006 chrX 21517070 21517099 21 124 9.5 5.0 7.2 2.6 141 chrX 21516958 intron CR45082 - chrX 21517028 intron CR45082 - chrX 21517099 intron CR45082 - chrX_21_21515001 chrX_21515001 RAL-843 3979 chrX 21581506 21581562 chrX 21581637 21581681 11 130 3.5 0.0 1.8 3.9 175 chrX 21581506 intergenic not near genes chrX 21581594 intergenic not near genes chrX 21581681 intergenic not near genes chrX_11_21580001 chrX_21580001 RAL-843 3980 chrX 21595522 21595558 chrX 21598645 21598681 micropia 15 3123 9.0 9.5 9.2 1.5 3159 chrX 21595522 intergenic not near genes chrX 21597102 intergenic not near genes chrX 21598681 intergenic not near genes chrX_15_21595001 chrX_21595001 RAL-843 3981 chrX 21668213 21668290 chrX 21668348 21668425 23 135 6.0 1.5 3.8 4.8 212 chrX 21668213 intergenic not near genes chrX 21668319 intergenic not near genes chrX 21668425 intergenic not near genes chrX_23_21665001 chrX_21665001 RAL-843 3982 chrX 22478877 22478895 chrX 22479060 22479078 7 183 0.0 20.5 10.2 0.6 201 chrX 22478877 intron CG12576 - chrX 22478978 intron CG12576 - chrX 22479078 intron CG12576 - chrX_7_22475001 chrX_22475001 RAL-843 3983 chrX 22585462 22585524 chrX 22585595 22585658 11 132 3.5 0.0 1.8 3.9 196 chrX 22585462 intron Cda4 - chrX 22585560 intron Cda4 - chrX 22585658 intron Cda4 - chrX_11_22585001 chrX_22585001 RAL-843 3984 chrX 22637489 22637520 chrX 22637617 22637643 16 128 6.5 0.0 3.2 3.8 154 chrX 22637489 intergenic not near genes chrX 22637566 intergenic not near genes chrX 22637643 intergenic not near genes chrX_16_22635001 chrX_22635001 RAL-843 3985 chrX 22677249 22677325 chrX 22677508 22677563 30 256 4.0 9.0 6.5 4.0 314 chrX 22677249 intron CR44997 + chrX 22677406 intron CR44997 + chrX 22677563 intron CR44997 + chrX_30_22675001 chrX_22675001 RAL-843 3986 chrX 22681433 22681476 chrX 22688939 22688982 HMS-Beagle2 13 7506 11.5 5.5 8.5 1.4 7549 chrX 22681433 intron CR44997 + chrX 22685208 intron CR44997 + chrX 22688982 intron CR44997 + chrX_13_22685001 chrX_22685001 RAL-843 3987 chrX 22697463 22697508 chrX 22701810 22701855 Juan 14 4346 9.0 10.5 9.8 1.3 4392 chrX 22697463 intron CR44997 + chrX 22699659 intron CR44997 + chrX 22701855 intron CR44997 + chrX_14_22695001 chrX_22695001 RAL-843 3988 chrX 22737215 22737224 chrX 22746704 22746712 INE-1 6 9489 13.5 3.5 8.5 0.6 9497 chrX 22737215 intron CR44997 + chrX 22741964 intron CR44997 + chrX 22746712 intron CR44997 + chrX_6_22740001 chrX_22740001 RAL-843 3989 chrX 22737225 22737292 chrX 22746702 22746773 INE-1 19 9485 4.5 3.5 4.0 3.8 9548 chrX 22737225 intron CR44997 + chrX 22741999 intron CR44997 + chrX 22746773 intron CR44997 + chrX_19_22740001 chrX_22740001 RAL-843 3990 chrX 22764326 22764398 chrX 22764472 22764544 26 145 5.0 5.0 5.0 4.3 218 chrX 22764326 intron CR44997 + chrX 22764435 intron CR44997 + chrX 22764544 intron,3` UTR CR44997 +,CR44109 - chrX_26_22760001 chrX_22760001 RAL-843 3991 chrX 22771462 22771524 chrX 22774803 22774865 297 14 3340 7.5 6.5 7.0 1.8 3403 chrX 22771462 intron CR44997 + chrX 22773164 intron CR44997 + chrX 22774865 intron CR44997 + chrX_14_22770001 chrX_22770001 RAL-843 3992 chrX 22798723 22798797 chrX 22798890 22798939 38 162 0.5 9.0 4.8 6.6 216 chrX 22798723 intergenic not near genes chrX 22798831 intergenic not near genes chrX 22798939 intergenic not near genes chrX_38_22795001 chrX_22795001 RAL-843 3993 chrX 22811956 22812001 chrX 22816779 22816819 F-element 21 4823 9.0 14.5 11.8 1.6 4863 chrX 22811956 intergenic CG12446 - chrX 22814388 intergenic not near genes chrX 22816819 intergenic not near genes chrX_21_22810001 chrX_22810001 RAL-843 3994 chrX 22824220 22824440 chrX 22824396 22824623 34 180 0.5 0.5 0.5 22.7 403 chrX 22824220 intergenic fog - chrX 22824422 3` UTR fog - chrX 22824623 3` UTR fog - chrX_34_22820001 chrX_22820001 RAL-843 3995 chrX 22844501 22844525 chrX 22844638 22844662 9 137 8.5 6.5 7.5 1.1 161 chrX 22844501 intron,intron fog -,CG42346 + chrX 22844582 intron,intron fog -,CG42346 + chrX 22844662 intron,intron fog -,CG42346 + chrX_9_22840001 chrX_22840001 RAL-843 3996 chrX 22869145 22869165 chrX 22869259 22869291 4 118 5.0 5.0 5.0 0.7 146 chrX 22869145 intron CG42346 + chrX 22869218 intron CG42346 + chrX 22869291 intron CG42346 + chrX_4_22865001 chrX_22865001 RAL-843 3997 chrX 22891088 22891179 chrX 22891221 22891305 16 131 2.0 5.0 3.5 3.6 217 chrX 22891088 intergenic not near genes chrX 22891196 intergenic not near genes chrX 22891305 intergenic not near genes chrX_16_22890001 chrX_22890001 RAL-843 3998 chrX 22898807 22898819 chrX 22899254 22899266 6 446 16.0 0.0 8.0 0.7 459 chrX 22898807 intergenic not near genes chrX 22899036 intergenic not near genes chrX 22899266 intergenic not near genes chrX_6_22895001 chrX_22895001 RAL-843 3999 chrX 22982793 22982857 chrX 22983026 22983090 25 233 8.0 8.0 8.0 2.8 297 chrX 22982793 3` UTR,exon stnA -,stnB - chrX 22982942 intron,intron stnA -,stnB - chrX 22983090 intron,intron stnA -,stnB - chrX_25_22980001 chrX_22980001 RAL-843 4000 chrX 22987063 22987125 chrX 22989772 22989834 Burdock 15 2708 4.0 5.0 4.5 2.7 2771 chrX 22987063 intron,intron stnA -,stnB - chrX 22988448 intron,intron stnA -,stnB - chrX 22989834 intron,intron stnA -,stnB - chrX_15_22985001 chrX_22985001 RAL-843 4001 chrX 22996275 22996332 chrX 23003559 23003616 roo 28 7284 9.5 13.5 11.5 2.2 7341 chrX 22996275 intron,intron stnA -,stnB - chrX 22999946 intron,intron stnA -,stnB - chrX 23003616 intron,intron stnA -,stnB - chrX_28_22995001 chrX_22995001 RAL-843 4002 chrY 864675 864741 chrY 864802 864867 6 125 21.0 22.0 21.5 0.3 192 chrY 864675 intergenic not near genes chrY 864771 intergenic not near genes chrY 864867 intergenic not near genes chrY_6_860001 chrY_860001 RAL-843 4003 chrY 975742 975814 chrY 975872 975935 18 156 198.0 214.5 206.2 0.1 193 chrY 975742 intergenic not near genes chrY 975838 intergenic not near genes chrY 975935 intergenic not near genes chrY_18_975001 chrY_975001 RAL-843 4004 chrY 1419864 1419882 chrY 1420168 1420186 4 302 23.0 15.5 19.2 0.2 322 chrY 1419864 intergenic not near genes chrY 1420025 intergenic not near genes chrY 1420186 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-843 4005 chrY 1420592 1420646 chrY 1420743 1420755 4 136 14.5 18.0 16.2 0.2 163 chrY 1420592 intergenic not near genes chrY 1420674 intergenic not near genes chrY 1420755 intergenic not near genes chrY_4_1420001 chrY_1420001 RAL-843 4006 chrY 1445413 1445436 chrY 1447394 1447416 10 1980 14.5 18.5 16.5 0.6 2003 chrY 1445413 intergenic not near genes chrY 1446414 intergenic not near genes chrY 1447416 intergenic not near genes chrY_10_1445001 chrY_1445001 RAL-843 4007 chrY 3664987 3665013 chrY 3665105 3665167 4 145 0.5 0.0 0.2 3.3 180 chrY 3664987 intergenic CG40948 + chrY 3665077 intergenic not near genes chrY 3665167 intergenic not near genes chrY_4_3665001 chrY_3665001 RAL-843