SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47448	47455	chr2L	52573	52575	jockey	4	5124	3.5	9.0	6.2	0.6	5127	chr2L	47448	intron	Cda5 -	chr2L	50012	intron	Cda5 -	chr2L	52575	intron	Cda5 -	chr2L_4_50001	chr2L_50001	RAL-832
2	chr2L	47464	47477	chr2L	52569	52602	jockey	4	5109	2.0	9.0	5.5	0.6	5138	chr2L	47464	intron	Cda5 -	chr2L	50033	intron	Cda5 -	chr2L	52602	intron	Cda5 -	chr2L_4_50001	chr2L_50001	RAL-832
4	chr2L	347865	347919	chr2L	355385	355394	blood	6	7504	3.0	5.5	4.2	1.2	7529	chr2L	347865	3` UTR	Plc21C +	chr2L	351630	intron	Plc21C +	chr2L	355394	3` UTR	Plc21C +	chr2L_6_350001	chr2L_350001	RAL-832
6	chr2L	686923	686941	chr2L	695962	695981	roo	5	9042	1.0	1.5	1.2	2.3	9058	chr2L	686923	intron	ds -	chr2L	691452	intron	ds -	chr2L	695981	intron	ds -	chr2L_5_690001	chr2L_690001	RAL-832
14	chr2L	1220140	1220160	chr2L	1227625	1227644	blood	4	7484	3.0	6.0	4.5	0.7	7504	chr2L	1220140	intron	CG42329 +	chr2L	1223892	intron	CG42329 +	chr2L	1227644	intron	CG42329 +	chr2L_4_1220001	chr2L_1220001	RAL-832
17	chr2L	1301780	1301782	chr2L	1302303	1302339	gypsy	4	547	0.0	7.0	3.5	0.9	559	chr2L	1301780	intergenic	not near genes	chr2L	1302060	intergenic	not near genes	chr2L	1302339	intergenic	not near genes	chr2L_4_1300001	chr2L_1300001	RAL-832
25	chr2L	1570673	1570704	chr2L	1573565	1573596	F-element	6	2892	5.0	1.0	3.0	1.5	2923	chr2L	1570673	intron	haf +	chr2L	1572134	intron	haf +	chr2L	1573596	intron	haf +	chr2L_6_1570001	chr2L_1570001	RAL-832
27	chr2L	1678985	1679007	chr2L	1686440	1686471	blood	7	7471	3.5	5.0	4.2	1.3	7486	chr2L	1678985	intron	chinmo +	chr2L	1682728	intron	chinmo +	chr2L	1686471	intron	chinmo +	chr2L_7_1680001	chr2L_1680001	RAL-832
28	chr2L	1711353	1711363	chr2L	1711680	1711685	mdg3	6	328	5.0	2.5	3.8	1.2	332	chr2L	1711353	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711519	3` UTR	frtz -	chr2L	1711685	3` UTR	frtz -	chr2L_6_1710001	chr2L_1710001	RAL-832
42	chr2L	2772608	2772615	chr2L	2779196	2779219	297	5	6595	5.0	6.0	5.5	0.8	6611	chr2L	2772608	3` UTR	Syt1 -	chr2L	2775914	intron	Syt1 -	chr2L	2779219	3` UTR	Syt1 -	chr2L_5_2775001	chr2L_2775001	RAL-832
47	chr2L	3073010	3073056	chr2L	3078233	3078259	copia	7	5219	4.0	2.0	3.0	1.8	5249	chr2L	3073010	intron	toc -	chr2L	3075634	intron	toc -	chr2L	3078259	intron	toc -	chr2L_7_3075001	chr2L_3075001	RAL-832
52	chr2L	3202724	3202741	chr2L	3210173	3210190	mdg1	8	7449	11.0	1.5	6.2	1.1	7466	chr2L	3202724	intergenic	not near genes	chr2L	3206457	intergenic	not near genes	chr2L	3210190	intergenic	CR45336 +	chr2L_8_3205001	chr2L_3205001	RAL-832
53	chr2L	3202742	3202770	chr2L	3210166	3210219	mdg1	7	7437	4.0	1.5	2.8	1.8	7477	chr2L	3202742	intergenic	not near genes	chr2L	3206480	intergenic	not near genes	chr2L	3210219	intergenic	CR45336 +	chr2L_7_3205001	chr2L_3205001	RAL-832
54	chr2L	3251484	3251522	chr2L	3259059	3259107	springer	8	7574	5.0	2.5	3.8	1.7	7623	chr2L	3251484	intergenic	not near genes	chr2L	3255296	intergenic	not near genes	chr2L	3259107	intergenic	not near genes	chr2L_8_3255001	chr2L_3255001	RAL-832
57	chr2L	3388578	3388630	chr2L	3388839	3388891	pogo	18	259	5.0	7.5	6.2	2.5	313	chr2L	3388578	intergenic	CG42460 -	chr2L	3388734	intergenic	CG42460 -	chr2L	3388891	intergenic	CG42460 -,CR44791 +	chr2L_18_3385001	chr2L_3385001	RAL-832
60	chr2L	3649777	3649806	chr2L	3654990	3655010	copia	7	5212	1.5	2.0	1.8	2.5	5233	chr2L	3649777	intron	for -	chr2L	3652394	intron	for -	chr2L	3655010	intron	for -	chr2L_7_3650001	chr2L_3650001	RAL-832
76	chr2L	4601686	4601731	chr2L	4609146	4609192	mdg1	8	7454	4.0	2.0	3.0	2.0	7506	chr2L	4601686	intron	dp -	chr2L	4605439	intron	dp -	chr2L	4609192	intron	dp -	chr2L_8_4605001	chr2L_4605001	RAL-832
77	chr2L	4661829	4661858	chr2L	4669429	4669442	opus	4	7594	3.5	4.0	3.8	0.8	7613	chr2L	4661829	intergenic	not near genes	chr2L	4665636	intergenic	not near genes	chr2L	4669442	intergenic	not near genes	chr2L_4_4665001	chr2L_4665001	RAL-832
104	chr2L	5827707	5827741	chr2L	5836720	5836732	roo	8	9011	3.5	4.5	4.0	1.6	9025	chr2L	5827707	intron	TrissinR +	chr2L	5832220	intron	TrissinR +	chr2L	5836732	intron	TrissinR +	chr2L_8_5830001	chr2L_5830001	RAL-832
114	chr2L	6279632	6279649	chr2L	6279720	6279737	INE-1	10	92	4.0	1.0	2.5	2.9	105	chr2L	6279632	intron	Ddr +	chr2L	6279684	intron	Ddr +	chr2L	6279737	intron	Ddr +	chr2L_10_6275001	chr2L_6275001	RAL-832
116	chr2L	6363138	6363183	chr2L	6366076	6366078	Burdock	12	2926	2.0	1.5	1.8	4.3	2940	chr2L	6363138	intergenic	not near genes	chr2L	6364608	intergenic	not near genes	chr2L	6366078	intergenic	not near genes	chr2L_12_6360001	chr2L_6360001	RAL-832
117	chr2L	6426839	6426887	chr2L	6445119	6445151	roo	12	18276	5.5	1.5	3.5	2.7	18312	chr2L	6426839	3` UTR	CG9527 -	chr2L	6435995	intron	CG9527 -	chr2L	6445151	exon	CG9527 -	chr2L_12_6435001	chr2L_6435001	RAL-832
147	chr2L	7959027	7959056	chr2L	7960458	7960487	pogo	9	1426	6.0	3.0	4.5	1.6	1460	chr2L	7959027	intron	Snoo -	chr2L	7959757	intron	Snoo -	chr2L	7960487	intron	Snoo -	chr2L_9_7955001	chr2L_7955001	RAL-832
153	chr2L	8452422	8452441	chr2L	8461592	8461612	roo	10	9180	3.5	7.0	5.2	1.6	9190	chr2L	8452422	intron	fu12 -	chr2L	8457017	intron	fu12 -	chr2L	8461612	intron	fu12 -	chr2L_10_8455001	chr2L_8455001	RAL-832
156	chr2L	8594446	8594496	chr2L	8601520	8601570	297	9	7071	5.5	0.0	2.8	2.4	7124	chr2L	8594446	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598008	intron	Sema-1a +	chr2L	8601570	intron	Sema-1a +	chr2L_9_8595001	chr2L_8595001	RAL-832
159	chr2L	8723103	8723138	chr2L	8731491	8731523	Tirant	9	8389	2.0	4.0	3.0	2.2	8420	chr2L	8723103	intron	raw -	chr2L	8727313	intron	raw -	chr2L	8731523	intron	raw -	chr2L_9_8725001	chr2L_8725001	RAL-832
166	chr2L	9217976	9218004	chr2L	9222782	9222819	Doc	5	4808	3.0	0.0	1.5	2.0	4843	chr2L	9217976	intron	tai +	chr2L	9220398	intron	tai +	chr2L	9222819	intron	tai +	chr2L_5_9220001	chr2L_9220001	RAL-832
172	chr2L	9393483	9393531	chr2L	9396470	9396508	jockey	10	2982	4.0	3.0	3.5	2.2	3025	chr2L	9393483	intron	Shawl -	chr2L	9394996	intron	Shawl -	chr2L	9396508	intron	Shawl -	chr2L_10_9390001	chr2L_9390001	RAL-832
195	chr2L	10592851	10592872	chr2L	10600506	10600526	opus	5	7658	0.5	1.5	1.0	2.5	7675	chr2L	10592851	intron	Trim9 +	chr2L	10596688	intron	Trim9 +	chr2L	10600526	intron	Trim9 +	chr2L_5_10595001	chr2L_10595001	RAL-832
210	chr2L	11563647	11563667	chr2L	11568849	11568881	copia	5	5213	0.5	6.0	3.2	1.2	5234	chr2L	11563647	intergenic	not near genes	chr2L	11566264	intergenic	not near genes	chr2L	11568881	intergenic	not near genes	chr2L_5_11565001	chr2L_11565001	RAL-832
220	chr2L	12067315	12067353	chr2L	12074387	12074419	297	11	7069	5.0	3.5	4.2	2.1	7104	chr2L	12067315	intergenic	not near genes	chr2L	12070867	intergenic	not near genes	chr2L	12074419	intergenic	not near genes	chr2L_11_12070001	chr2L_12070001	RAL-832
232	chr2L	12558305	12558346	chr2L	12565454	12565478	HMS-Beagle	5	7136	0.5	2.0	1.2	2.3	7173	chr2L	12558305	intergenic	not near genes	chr2L	12561892	intergenic	not near genes	chr2L	12565478	intergenic	not near genes	chr2L_5_12560001	chr2L_12560001	RAL-832
233	chr2L	12731040	12731064	chr2L	12735827	12735851	F-element	5	4787	4.5	2.0	3.2	1.2	4811	chr2L	12731040	intron	MRP +	chr2L	12733446	intron	MRP +	chr2L	12735851	intron	MRP +	chr2L_5_12730001	chr2L_12730001	RAL-832
234	chr2L	12731066	12731082	chr2L	12735826	12735869	F-element	4	4774	4.5	2.0	3.2	1.0	4803	chr2L	12731066	intron	MRP +	chr2L	12733468	intron	MRP +	chr2L	12735869	intron	MRP +	chr2L_4_12730001	chr2L_12730001	RAL-832
235	chr2L	12739161	12739204	chr2L	12743956	12743995	Doc	9	4795	2.0	6.0	4.0	1.8	4834	chr2L	12739161	exon	MRP +	chr2L	12741578	intron	MRP +	chr2L	12743995	exon	MRP +	chr2L_9_12740001	chr2L_12740001	RAL-832
236	chr2L	12763865	12763871	chr2L	12764063	12764083	BS	4	204	0.0	1.0	0.5	2.7	218	chr2L	12763865	intergenic	not near genes	chr2L	12763974	intergenic	not near genes	chr2L	12764083	intergenic	not near genes	chr2L_4_12760001	chr2L_12760001	RAL-832
237	chr2L	12781790	12781810	chr2L	12789248	12789252	Quasimodo	6	7456	5.5	6.5	6.0	0.9	7462	chr2L	12781790	intergenic	not near genes	chr2L	12785521	intergenic	not near genes	chr2L	12789252	intergenic	not near genes	chr2L_6_12785001	chr2L_12785001	RAL-832
238	chr2L	12791617	12791635	chr2L	12795290	12795305	F-element	6	3677	4.5	5.5	5.0	1.0	3688	chr2L	12791617	intergenic	not near genes	chr2L	12793461	intergenic	not near genes	chr2L	12795305	intergenic	not near genes	chr2L_6_12790001	chr2L_12790001	RAL-832
241	chr2L	12933828	12933870	chr2L	12941315	12941357	blood	7	7478	3.5	2.5	3.0	1.8	7529	chr2L	12933828	intergenic	not near genes	chr2L	12937592	intergenic	not near genes	chr2L	12941357	intergenic	not near genes	chr2L_7_12935001	chr2L_12935001	RAL-832
244	chr2L	13405628	13405680	chr2L	13410445	13410477	Doc	6	4807	1.0	3.5	2.2	1.9	4849	chr2L	13405628	exon	CG7110 +	chr2L	13408052	intron	CG7110 +	chr2L	13410477	intron	CG7110 +	chr2L_6_13405001	chr2L_13405001	RAL-832
247	chr2L	13449446	13449483	chr2L	13456902	13456939	Quasimodo	14	7450	4.5	5.0	4.8	2.4	7493	chr2L	13449446	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453192	intron	CG42784 +	chr2L	13456939	intron	CG42784 +	chr2L_14_13450001	chr2L_13450001	RAL-832
248	chr2L	13560407	13560420	chr2L	13565218	13565261	F-element	8	4831	5.5	1.0	3.2	1.9	4854	chr2L	13560407	intron	kuz +	chr2L	13562834	intron	kuz +	chr2L	13565261	intron	kuz +	chr2L_8_13560001	chr2L_13560001	RAL-832
254	chr2L	13853074	13853108	chr2L	13862243	13862264	roo	7	9163	2.0	7.5	4.8	1.2	9190	chr2L	13853074	intron	CenG1A +	chr2L	13857669	intron	CenG1A +	chr2L	13862264	intron	CenG1A +	chr2L_7_13855001	chr2L_13855001	RAL-832
274	chr2L	14642569	14642603	chr2L	14651734	14651786	roo	8	9175	3.0	5.5	4.2	1.5	9217	chr2L	14642569	intron	osp -	chr2L	14647178	intron	osp -	chr2L	14651786	intron	osp -	chr2L_8_14645001	chr2L_14645001	RAL-832
278	chr2L	14803877	14803909	chr2L	14809080	14809125	copia	7	5209	3.0	4.0	3.5	1.6	5248	chr2L	14803877	intergenic	not near genes	chr2L	14806501	intergenic	not near genes	chr2L	14809125	intergenic	not near genes	chr2L_7_14805001	chr2L_14805001	RAL-832
283	chr2L	14984382	14984402	chr2L	14991984	14992024	opus	10	7608	4.5	3.5	4.0	2.0	7642	chr2L	14984382	intron	mol -	chr2L	14988203	intron	mol -	chr2L	14992024	intron	mol -	chr2L_10_14985001	chr2L_14985001	RAL-832
297	chr2L	15586393	15586437	chr2L	15593465	15593509	297	18	7072	8.0	2.0	5.0	3.0	7116	chr2L	15586393	intergenic	not near genes	chr2L	15589951	intergenic	not near genes	chr2L	15593509	intergenic	not near genes	chr2L_18_15585001	chr2L_15585001	RAL-832
300	chr2L	15826878	15826893	chr2L	15829292	15829307	Tabor	5	2414	0.5	8.5	4.5	0.9	2429	chr2L	15826878	intergenic	not near genes	chr2L	15828092	intergenic	not near genes	chr2L	15829307	intergenic	not near genes	chr2L_5_15825001	chr2L_15825001	RAL-832
303	chr2L	15956019	15956055	chr2L	15957491	15957542	hobo	8	1475	8.0	5.5	6.8	1.0	1523	chr2L	15956019	intron	beat-Ib -	chr2L	15956780	intron	beat-Ib -	chr2L	15957542	intron	beat-Ib -	chr2L_8_15955001	chr2L_15955001	RAL-832
305	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	5	145889	7.5	12.0	9.8	0.5	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-832
309	chr2L	16141165	16141179	chr2L	16146377	16146382	copia	4	5216	4.5	1.5	3.0	1.0	5217	chr2L	16141165	intergenic	not near genes	chr2L	16143774	intergenic	not near genes	chr2L	16146382	intergenic	not near genes	chr2L_4_16140001	chr2L_16140001	RAL-832
310	chr2L	16141182	16141191	chr2L	16146373	16146392	copia	5	5215	3.5	1.5	2.5	1.4	5210	chr2L	16141182	intergenic	not near genes	chr2L	16143787	intergenic	not near genes	chr2L	16146392	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-832
315	chr2L	16511967	16511991	chr2L	16519114	16519138	HMS-Beagle	9	7144	3.0	6.5	4.8	1.6	7171	chr2L	16511967	intron	CG5953 -	chr2L	16515552	intron	CG5953 -	chr2L	16519138	intron	CG5953 -	chr2L_9_16515001	chr2L_16515001	RAL-832
322	chr2L	16958089	16958135	chr2L	16962897	16962923	Doc	14	4800	2.5	3.5	3.0	3.5	4834	chr2L	16958089	intergenic	not near genes	chr2L	16960506	intergenic	not near genes	chr2L	16962923	intergenic	not near genes	chr2L_14_16960001	chr2L_16960001	RAL-832
326	chr2L	17167551	17167580	chr2L	17167806	17167841	pogo	8	257	4.5	2.0	3.2	1.9	290	chr2L	17167551	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167696	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167841	intron,intron	CG34106 +,beat-IIIa +	chr2L_8_17165001	chr2L_17165001	RAL-832
327	chr2L	17199142	17199190	chr2L	17200629	17200667	hobo	8	1482	5.0	4.5	4.8	1.4	1525	chr2L	17199142	intron	beat-IIIc -	chr2L	17199904	intron	beat-IIIc -	chr2L	17200667	intron	beat-IIIc -	chr2L_8_17195001	chr2L_17195001	RAL-832
330	chr2L	17273195	17273224	chr2L	17277973	17277975	F-element	9	4778	1.5	4.0	2.8	2.4	4780	chr2L	17273195	intergenic	not near genes	chr2L	17275585	intergenic	not near genes	chr2L	17277975	intergenic	not near genes	chr2L_9_17275001	chr2L_17275001	RAL-832
344	chr2L	17687503	17687520	chr2L	17692268	17692285	F-element	5	4764	2.5	1.5	2.0	1.7	4782	chr2L	17687503	intron	CadN -	chr2L	17689894	intron	CadN -	chr2L	17692285	intron	CadN -	chr2L_5_17685001	chr2L_17685001	RAL-832
347	chr2L	17819906	17819940	chr2L	17825128	17825149	copia	6	5218	4.0	2.5	3.2	1.4	5243	chr2L	17819906	intron	CadN2 -	chr2L	17822528	intron	CadN2 -	chr2L	17825149	intron	CadN2 -	chr2L_6_17820001	chr2L_17820001	RAL-832
349	chr2L	17911969	17911989	chr2L	17914139	17914174	pogo	7	2189	2.0	5.0	3.5	1.6	2205	chr2L	17911969	intergenic	not near genes	chr2L	17913072	intergenic	not near genes	chr2L	17914174	intergenic	CG43271 -	chr2L_7_17910001	chr2L_17910001	RAL-832
350	chr2L	17951937	17951964	chr2L	17953412	17953428	hobo	6	1478	3.5	4.0	3.8	1.2	1491	chr2L	17951937	intergenic	CR44398 -,CR44397 -	chr2L	17952682	intergenic	not near genes	chr2L	17953428	intergenic	not near genes	chr2L_6_17950001	chr2L_17950001	RAL-832
351	chr2L	17951965	17951975	chr2L	17953410	17953462	hobo	4	1472	3.0	3.5	3.2	1.0	1497	chr2L	17951965	intergenic	CR44398 -,CR44397 -	chr2L	17952714	intergenic	not near genes	chr2L	17953462	intergenic	not near genes	chr2L_4_17950001	chr2L_17950001	RAL-832
352	chr2L	18051867	18051908	chr2L	18061020	18061044	roo	8	9144	4.5	3.0	3.8	1.7	9177	chr2L	18051867	intron	rdo +	chr2L	18056456	intron	rdo +	chr2L	18061044	intron	rdo +	chr2L_8_18055001	chr2L_18055001	RAL-832
360	chr2L	18408012	18408031	chr2L	18412816	18412818	Doc	5	4799	8.0	0.0	4.0	1.0	4806	chr2L	18408012	intergenic	not near genes	chr2L	18410415	intergenic	not near genes	chr2L	18412818	intergenic	not near genes	chr2L_5_18410001	chr2L_18410001	RAL-832
370	chr2L	19147379	19147402	chr2L	19154408	19154457	297	7	7049	1.5	3.5	2.5	2.0	7078	chr2L	19147379	intron	brat +	chr2L	19150918	intron	brat +	chr2L	19154457	intron	brat +	chr2L_7_19150001	chr2L_19150001	RAL-832
372	chr2L	19345012	19345038	chr2L	19357221	19357241	blood	6	12220	2.5	1.0	1.8	2.1	12229	chr2L	19345012	intron	dnt -	chr2L	19351126	intron	dnt -	chr2L	19357241	intron	dnt -	chr2L_6_19350001	chr2L_19350001	RAL-832
382	chr2L	19652556	19652588	chr2L	19674011	19674043	opus	12	21453	8.0	5.0	6.5	1.6	21487	chr2L	19652556	intron	Lar +	chr2L	19663300	intron	Lar +	chr2L	19674043	intron	Lar +	chr2L_12_19660001	chr2L_19660001	RAL-832
383	chr2L	19703540	19703568	chr2L	19712671	19712697	roo	5	9146	5.0	3.5	4.2	1.0	9157	chr2L	19703540	intron	Lar +	chr2L	19708118	intron	Lar +	chr2L	19712697	intron	Lar +	chr2L_5_19705001	chr2L_19705001	RAL-832
384	chr2L	19762820	19762834	chr2L	19763082	19763096	pogo	5	262	1.5	6.0	3.8	1.0	276	chr2L	19762820	intron	fbp -	chr2L	19762958	intron	fbp -	chr2L	19763096	intron	fbp -	chr2L_5_19760001	chr2L_19760001	RAL-832
393	chr2L	20005866	20005898	chr2L	20010950	20010973	flea	9	5085	7.0	5.5	6.2	1.2	5107	chr2L	20005866	intron	CG43861 -	chr2L	20008420	intron	CG43861 -	chr2L	20010973	intron	CG43861 -	chr2L_9_20005001	chr2L_20005001	RAL-832
397	chr2L	20272096	20272143	chr2L	20282827	20282864	copia	9	10726	4.0	4.0	4.0	1.8	10768	chr2L	20272096	intergenic	not near genes	chr2L	20277480	intergenic	not near genes	chr2L	20282864	intergenic	not near genes	chr2L_9_20275001	chr2L_20275001	RAL-832
402	chr2L	20372207	20372246	chr2L	20372468	20372507	pogo	14	260	0.5	2.5	1.5	5.6	300	chr2L	20372207	intergenic	Ugt37a1 -	chr2L	20372357	intergenic	Ugt37a1 -	chr2L	20372507	exon	Ugt37a1 -	chr2L_14_20370001	chr2L_20370001	RAL-832
408	chr2L	20576211	20576239	chr2L	20583685	20583715	blood	5	7470	3.0	2.5	2.8	1.3	7504	chr2L	20576211	intergenic	CR45347 +	chr2L	20579963	intergenic	not near genes	chr2L	20583715	3` UTR	CR44909 -	chr2L_5_20575001	chr2L_20575001	RAL-832
414	chr2L	20835800	20835832	chr2L	20836537	20836569	Quasimodo	9	733	3.0	5.0	4.0	1.8	769	chr2L	20835800	5` UTR	Oseg5 -	chr2L	20836184	intergenic	Oseg5 -,Spn38F -	chr2L	20836569	intergenic	Spn38F -	chr2L_9_20835001	chr2L_20835001	RAL-832
416	chr2L	20976628	20976680	chr2L	20981458	20981497	X-element	10	4825	3.0	2.5	2.8	2.6	4869	chr2L	20976628	intron	CG42238 -	chr2L	20979062	intron	CG42238 -	chr2L	20981497	intron	CG42238 -	chr2L_10_20975001	chr2L_20975001	RAL-832
417	chr2L	21041131	21041165	chr2L	21049401	21049417	Tirant	4	8256	2.0	2.5	2.2	1.2	8286	chr2L	21041131	intron	CG42238 -	chr2L	21045274	intron	CG42238 -	chr2L	21049417	intron	CG42238 -	chr2L_4_21045001	chr2L_21045001	RAL-832
422	chr2L	21347551	21347567	chr2L	21355042	21355058	blood	5	7491	10.0	8.5	9.2	0.5	7507	chr2L	21347551	intron	Tsp39D +	chr2L	21351304	intron	Tsp39D +	chr2L	21355058	intron	Tsp39D +	chr2L_5_21350001	chr2L_21350001	RAL-832
423	chr2L	21347573	21347583	chr2L	21355027	21355074	blood	5	7479	4.5	4.5	4.5	0.9	7501	chr2L	21347573	intron	Tsp39D +	chr2L	21351324	intron	Tsp39D +	chr2L	21355074	intron	Tsp39D +	chr2L_5_21350001	chr2L_21350001	RAL-832
424	chr2L	21597034	21597057	chr2L	21604772	21604775	roo	9	7744	2.0	4.5	3.2	2.1	7741	chr2L	21597034	intergenic	not near genes	chr2L	21600904	intergenic	not near genes	chr2L	21604775	intergenic	not near genes	chr2L_9_21600001	chr2L_21600001	RAL-832
425	chr2L	21691818	21691850	chr2L	21698298	21698325	Burdock	11	6482	8.0	0.5	4.2	2.1	6507	chr2L	21691818	intron	CG31619 +	chr2L	21695072	intron	CG31619 +	chr2L	21698325	intron	CG31619 +	chr2L_11_21695001	chr2L_21695001	RAL-832
431	chr2L	21981685	21981712	chr2L	21990845	21990897	roo	8	9176	0.5	2.0	1.2	3.6	9212	chr2L	21981685	exon	CG2528 -	chr2L	21986291	intron	CG2528 -	chr2L	21990897	exon	CG2528 -	chr2L_8_21985001	chr2L_21985001	RAL-832
436	chr2L	22548930	22548942	chr2L	22550145	22550181	1360	7	1234	0.5	8.0	4.2	1.3	1251	chr2L	22548930	intergenic	CG17490 +	chr2L	22549556	intergenic	not near genes	chr2L	22550181	intergenic	CG17493 +	chr2L_7_22545001	chr2L_22545001	RAL-832
440	chr2L	22581964	22582000	chr2L	22583773	22583799	S-element	7	1806	3.5	6.5	5.0	1.2	1835	chr2L	22581964	intron	CG17494 +	chr2L	22582882	intron	CG17494 +	chr2L	22583799	intron	CG17494 +	chr2L_7_22580001	chr2L_22580001	RAL-832
441	chr2L	22719426	22719456	chr2L	22727568	22727594	gypsy2	6	8136	2.5	2.0	2.2	1.9	8168	chr2L	22719426	intron	CG40006 -	chr2L	22723510	intron	CG40006 -	chr2L	22727594	intron	CG40006 -	chr2L_6_22720001	chr2L_22720001	RAL-832
442	chr2L	22776410	22776449	chr2L	22778211	22778258	S-element	14	1807	5.5	6.0	5.8	2.1	1848	chr2L	22776410	intergenic	not near genes	chr2L	22777334	intergenic	not near genes	chr2L	22778258	intergenic	not near genes	chr2L_14_22775001	chr2L_22775001	RAL-832
445	chr2R	1320201	1320201	chr2R	11463556	11463556	invader1	6	10143355	11.5	15.0	13.2	0.4	10143355	chr2R	1320201	intergenic	not near genes	chr2R	6391878	intergenic	not near genes	chr2R	11463556	3` UTR	E(Pc) +	chr2R_6_6390001	chr2R_6390001	RAL-832
447	chr2R	1516587	1516595	chr2R	1521334	1521339	1731	8	4747	47.5	36.0	41.8	0.2	4752	chr2R	1516587	exon	Maf1 -	chr2R	1518963	intron	Maf1 -	chr2R	1521339	5` UTR	Maf1 -	chr2R_8_1515001	chr2R_1515001	RAL-832
448	chr2R	1516596	1516602	chr2R	1521333	1521345	1731	11	4746	44.5	35.0	39.8	0.3	4749	chr2R	1516596	exon	Maf1 -	chr2R	1518970	intron	Maf1 -	chr2R	1521345	5` UTR	Maf1 -	chr2R_11_1515001	chr2R_1515001	RAL-832
449	chr2R	2498995	2499016	chr2R	2508138	2508183	roo	4	9160	2.5	5.5	4.0	0.8	9188	chr2R	2498995	intron	MFS17 -	chr2R	2503589	intron	MFS17 -	chr2R	2508183	intron	MFS17 -	chr2R_4_2500001	chr2R_2500001	RAL-832
454	chr2R	4750331	4750347	chr2R	4751497	4751503	1360	6	1164	7.0	1.5	4.2	1.2	1172	chr2R	4750331	intron	conu +	chr2R	4750917	intron	conu +	chr2R	4751503	intron	conu +	chr2R_6_4750001	chr2R_4750001	RAL-832
455	chr2R	4750349	4750376	chr2R	4751496	4751553	1360	6	1158	2.0	1.5	1.8	2.1	1204	chr2R	4750349	intron	conu +	chr2R	4750951	intron	conu +	chr2R	4751553	intron	conu +	chr2R_6_4750001	chr2R_4750001	RAL-832
464	chr2R	5417990	5418027	chr2R	5420626	5420679	Burdock	14	2639	4.0	5.0	4.5	2.5	2689	chr2R	5417990	intron	laccase2 +	chr2R	5419334	intron	laccase2 +	chr2R	5420679	intron	laccase2 +	chr2R_14_5415001	chr2R_5415001	RAL-832
468	chr2R	5543197	5543221	chr2R	5547301	5547325	invader1	6	4104	0.0	7.0	3.5	1.3	4128	chr2R	5543197	intron	CG30438 +	chr2R	5545261	intron	CG30438 +	chr2R	5547325	intron	CG30438 +	chr2R_6_5545001	chr2R_5545001	RAL-832
477	chr2R	5869256	5869306	chr2R	5874351	5874388	flea	12	5076	2.5	2.0	2.2	3.8	5132	chr2R	5869256	intergenic	not near genes	chr2R	5871822	intergenic	not near genes	chr2R	5874388	intergenic	not near genes	chr2R_12_5870001	chr2R_5870001	RAL-832
480	chr2R	5902147	5902170	chr2R	5909715	5909727	17.6	10	7573	2.0	4.0	3.0	2.5	7580	chr2R	5902147	intron	CG43366 +	chr2R	5905937	intron	CG43366 +	chr2R	5909727	intron	CG43366 +	chr2R_10_5905001	chr2R_5905001	RAL-832
492	chr2R	6494541	6494553	chr2R	6499295	6499335	F-element	6	4770	0.5	0.0	0.2	5.0	4794	chr2R	6494541	intergenic	not near genes	chr2R	6496938	intergenic	not near genes	chr2R	6499335	intergenic	not near genes	chr2R_6_6495001	chr2R_6495001	RAL-832
493	chr2R	6579777	6579799	chr2R	6584857	6584905	flea	9	5097	6.5	5.0	5.8	1.3	5128	chr2R	6579777	intron	jing +	chr2R	6582341	intron	jing +	chr2R	6584905	intron	jing +	chr2R_9_6580001	chr2R_6580001	RAL-832
496	chr2R	6952152	6952184	chr2R	6959744	6959784	opus	12	7599	3.0	4.5	3.8	2.5	7632	chr2R	6952152	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955968	intron,intron	mim -,CheB42c -	chr2R	6959784	intron,intron	mim -,CheB42c -	chr2R_12_6955001	chr2R_6955001	RAL-832
501	chr2R	7196552	7196573	chr2R	7201340	7201368	F-element	5	4794	8.0	0.0	4.0	1.0	4816	chr2R	7196552	intron	pk +	chr2R	7198960	intron	pk +	chr2R	7201368	intron	pk +	chr2R_5_7195001	chr2R_7195001	RAL-832
502	chr2R	7196576	7196588	chr2R	7201337	7201370	F-element	8	4787	4.5	0.0	2.2	2.5	4794	chr2R	7196576	intron	pk +	chr2R	7198973	intron	pk +	chr2R	7201370	intron	pk +	chr2R_8_7195001	chr2R_7195001	RAL-832
503	chr2R	7235810	7235837	chr2R	7240918	7240943	jockey	4	5103	5.0	2.5	3.8	0.8	5133	chr2R	7235810	intergenic	not near genes	chr2R	7238376	intergenic	not near genes	chr2R	7240943	intergenic	not near genes	chr2R_4_7235001	chr2R_7235001	RAL-832
505	chr2R	7434890	7434912	chr2R	7439191	7439211	Juan	7	4311	1.0	4.5	2.8	1.8	4321	chr2R	7434890	intergenic	so +	chr2R	7437050	intergenic	not near genes	chr2R	7439211	intergenic	not near genes	chr2R_7_7435001	chr2R_7435001	RAL-832
512	chr2R	7815656	7815689	chr2R	7822140	7822170	Burdock	8	6479	5.0	1.5	3.2	1.9	6514	chr2R	7815656	intergenic	CG1882 +	chr2R	7818913	intergenic	not near genes	chr2R	7822170	3` UTR	cathD -	chr2R_8_7815001	chr2R_7815001	RAL-832
513	chr2R	7869174	7869217	chr2R	7873979	7873988	Doc	9	4795	2.5	2.0	2.2	2.8	4814	chr2R	7869174	intron	Dgk -	chr2R	7871581	intron	Dgk -	chr2R	7873988	intron	Dgk -	chr2R_9_7870001	chr2R_7870001	RAL-832
521	chr2R	8160930	8160951	chr2R	8161039	8161056	1360	5	99	1.5	9.0	5.2	0.8	126	chr2R	8160930	intron	CG8708 -	chr2R	8160993	intron	CG8708 -	chr2R	8161056	intron	CG8708 -	chr2R_5_8160001	chr2R_8160001	RAL-832
523	chr2R	8330853	8330889	chr2R	8331347	8331395	roo	9	500	3.0	7.0	5.0	1.5	542	chr2R	8330853	intron	pdm3 +	chr2R	8331124	intron	pdm3 +	chr2R	8331395	intron	pdm3 +	chr2R_9_8330001	chr2R_8330001	RAL-832
528	chr2R	8722742	8722785	chr2R	8723003	8723013	pogo	5	243	5.0	0.5	2.8	1.3	271	chr2R	8722742	intron	CG14767 -	chr2R	8722878	intron	CG14767 -	chr2R	8723013	intron	CG14767 -	chr2R_5_8720001	chr2R_8720001	RAL-832
534	chr2R	9480075	9480106	chr2R	9490610	9490655	roo	15	10548	3.5	3.5	3.5	3.3	10580	chr2R	9480075	intergenic	not near genes	chr2R	9485365	intergenic	not near genes	chr2R	9490655	intergenic	not near genes	chr2R_15_9485001	chr2R_9485001	RAL-832
536	chr2R	9726613	9726640	chr2R	9734169	9734210	17.6	13	7565	5.5	5.5	5.5	2.0	7597	chr2R	9726613	intron	sqa -	chr2R	9730412	intron	sqa -	chr2R	9734210	intron	sqa -	chr2R_13_9730001	chr2R_9730001	RAL-832
549	chr2R	10176893	10176906	chr2R	10186080	10186088	roo	5	9182	3.5	6.0	4.8	0.9	9195	chr2R	10176893	intron	KCNQ -	chr2R	10181490	intron	KCNQ -	chr2R	10186088	intron	KCNQ -	chr2R_5_10180001	chr2R_10180001	RAL-832
567	chr2R	10659033	10659052	chr2R	10666668	10666687	mdg1	6	7634	0.0	3.0	1.5	2.4	7654	chr2R	10659033	intergenic	not near genes	chr2R	10662860	intergenic	not near genes	chr2R	10666687	intergenic	not near genes	chr2R_6_10660001	chr2R_10660001	RAL-832
577	chr2R	10979648	10979682	chr2R	10980133	10980172	297	6	477	1.0	5.0	3.0	1.5	524	chr2R	10979648	intergenic	not near genes	chr2R	10979910	intergenic	not near genes	chr2R	10980172	intergenic	not near genes	chr2R_6_10975001	chr2R_10975001	RAL-832
578	chr2R	11009800	11009811	chr2R	11018994	11019004	roo	4	9192	7.0	1.5	4.2	0.8	9204	chr2R	11009800	intron	luna -	chr2R	11014402	intron	luna -	chr2R	11019004	intron	luna -	chr2R_4_11010001	chr2R_11010001	RAL-832
579	chr2R	11009816	11009840	chr2R	11018986	11019002	roo	5	9171	2.5	0.5	1.5	2.0	9186	chr2R	11009816	intron	luna -	chr2R	11014409	intron	luna -	chr2R	11019002	intron	luna -	chr2R_5_11010001	chr2R_11010001	RAL-832
581	chr2R	11207816	11207840	chr2R	11208023	11208031	BS	6	205	6.5	11.5	9.0	0.6	215	chr2R	11207816	intron	shn +	chr2R	11207924	intron	shn +	chr2R	11208031	intron	shn +	chr2R_6_11205001	chr2R_11205001	RAL-832
585	chr2R	11415549	11415551	chr2R	11418665	11418700	opus	4	3134	1.5	2.0	1.8	1.4	3151	chr2R	11415549	intron	Drip -	chr2R	11417124	intron	Drip -	chr2R	11418700	intron	Drip -	chr2R_4_11415001	chr2R_11415001	RAL-832
586	chr2R	11472631	11472679	chr2R	11473850	11473896	pogo	7	1210	2.0	4.0	3.0	1.8	1265	chr2R	11472631	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473896	intergenic	not near genes	chr2R_7_11470001	chr2R_11470001	RAL-832
597	chr2R	12707520	12707545	chr2R	12715889	12715930	roo	11	8381	6.0	4.5	5.2	1.8	8410	chr2R	12707520	intron	CG42663 +	chr2R	12711725	intron	CG42663 +	chr2R	12715930	intron	CG42663 +	chr2R_11_12710001	chr2R_12710001	RAL-832
608	chr2R	13728122	13728161	chr2R	13735789	13735838	opus	14	7674	7.0	7.0	7.0	1.8	7716	chr2R	13728122	intron	fas +	chr2R	13731980	intron	fas +	chr2R	13735838	intron	fas +	chr2R_14_13730001	chr2R_13730001	RAL-832
620	chr2R	14497383	14497418	chr2R	14498554	14498597	1360	17	1182	4.5	6.0	5.2	2.7	1214	chr2R	14497383	3` UTR	Cpsf160 -	chr2R	14497990	intron	Cpsf160 -	chr2R	14498597	3` UTR	Cpsf160 -	chr2R_17_14495001	chr2R_14495001	RAL-832
633	chr2R	14889202	14889222	chr2R	14897820	14897833	Max-element	5	8616	7.5	0.0	3.8	1.0	8631	chr2R	14889202	intergenic	Cyp6a8 -	chr2R	14893518	intergenic	not near genes	chr2R	14897833	intergenic	not near genes	chr2R_5_14890001	chr2R_14890001	RAL-832
638	chr2R	15004711	15004762	chr2R	15005057	15005085	jockey	15	339	0.5	8.0	4.2	2.9	374	chr2R	15004711	intergenic	not near genes	chr2R	15004898	intergenic	not near genes	chr2R	15005085	intergenic	not near genes	chr2R_15_15000001	chr2R_15000001	RAL-832
639	chr2R	15015461	15015485	chr2R	15022884	15022912	mdg1	12	7431	1.0	2.0	1.5	4.8	7451	chr2R	15015461	intron	hbs +	chr2R	15019186	intron	hbs +	chr2R	15022912	intron	hbs +	chr2R_12_15015001	chr2R_15015001	RAL-832
640	chr2R	15084975	15085009	chr2R	15092038	15092066	297	5	7064	2.5	4.0	3.2	1.2	7091	chr2R	15084975	intergenic	not near genes	chr2R	15088520	intergenic	not near genes	chr2R	15092066	5` UTR	CR44457 +	chr2R_5_15085001	chr2R_15085001	RAL-832
643	chr2R	15119296	15119346	chr2R	15127797	15127846	Tirant	12	8487	1.5	2.5	2.0	4.0	8550	chr2R	15119296	intron	chn +	chr2R	15123571	intron	chn +	chr2R	15127846	intron	chn +	chr2R_12_15120001	chr2R_15120001	RAL-832
663	chr2R	17147226	17147268	chr2R	17152277	17152302	jockey	14	5048	3.0	3.5	3.2	3.3	5076	chr2R	17147226	intergenic	not near genes	chr2R	17149764	intergenic	not near genes	chr2R	17152302	intergenic	not near genes	chr2R_14_17145001	chr2R_17145001	RAL-832
666	chr2R	17176366	17176379	chr2R	17182576	17182589	diver	4	6210	1.0	8.0	4.5	0.7	6223	chr2R	17176366	intergenic	not near genes	chr2R	17179478	intergenic	not near genes	chr2R	17182589	intergenic	not near genes	chr2R_4_17175001	chr2R_17175001	RAL-832
671	chr2R	17485903	17485952	chr2R	17490677	17490724	F-element	7	4775	4.0	0.0	2.0	2.3	4821	chr2R	17485903	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488314	intron	NT5E-2 +	chr2R	17490724	intron	NT5E-2 +	chr2R_7_17485001	chr2R_17485001	RAL-832
674	chr2R	17782356	17782386	chr2R	17783573	17783609	pogo	14	1221	4.5	5.0	4.8	2.4	1253	chr2R	17782356	intergenic	CG33981 -,fab1 -	chr2R	17782982	intergenic	not near genes	chr2R	17783609	intergenic	mir-31a -	chr2R_14_17780001	chr2R_17780001	RAL-832
675	chr2R	17784021	17784056	chr2R	17784269	17784317	pogo	6	247	1.5	1.5	1.5	2.4	296	chr2R	17784021	intergenic	mir-31a -	chr2R	17784169	intergenic	mir-31a -	chr2R	17784317	intergenic	mir-31a -	chr2R_6_17780001	chr2R_17780001	RAL-832
681	chr2R	18045653	18045701	chr2R	18046025	18046073	jockey	13	370	1.0	5.5	3.2	3.1	420	chr2R	18045653	intergenic	not near genes	chr2R	18045863	intergenic	not near genes	chr2R	18046073	intergenic	CG5767 -	chr2R_13_18045001	chr2R_18045001	RAL-832
685	chr2R	18358392	18358411	chr2R	18372609	18372627	roo	8	14221	5.5	4.5	5.0	1.3	14235	chr2R	18358392	intergenic	not near genes	chr2R	18365510	intergenic	not near genes	chr2R	18372627	intergenic	not near genes	chr2R_8_18365001	chr2R_18365001	RAL-832
690	chr2R	18590852	18590895	chr2R	18600018	18600042	roo	4	9155	1.5	0.0	0.8	2.2	9190	chr2R	18590852	intron	GEFmeso -	chr2R	18595447	intron	GEFmeso -	chr2R	18600042	intron	GEFmeso -	chr2R_4_18595001	chr2R_18595001	RAL-832
715	chr2R	19776587	19776619	chr2R	19779921	19779945	jockey	11	3334	4.5	7.0	5.8	1.6	3358	chr2R	19776587	intergenic	not near genes	chr2R	19778266	intergenic	not near genes	chr2R	19779945	intergenic	not near genes	chr2R_11_19775001	chr2R_19775001	RAL-832
717	chr2R	19914838	19914864	chr2R	19922260	19922284	mdg1	5	7420	7.0	2.0	4.5	0.9	7446	chr2R	19914838	intergenic	not near genes	chr2R	19918561	intergenic	not near genes	chr2R	19922284	intergenic	not near genes	chr2R_5_19915001	chr2R_19915001	RAL-832
729	chr2R	20783291	20783331	chr2R	20788083	20788092	F-element	10	4784	2.0	3.5	2.8	2.6	4801	chr2R	20783291	intergenic	not near genes	chr2R	20785692	intergenic	not near genes	chr2R	20788092	intergenic	CG43666 -	chr2R_10_20785001	chr2R_20785001	RAL-832
734	chr2R	21151100	21151145	chr2R	21153753	21153798	opus	14	2647	4.0	5.5	4.8	2.4	2698	chr2R	21151100	intron	CG30389 -	chr2R	21152449	intron	CG30389 -	chr2R	21153798	intron	CG30389 -	chr2R_14_21150001	chr2R_21150001	RAL-832
740	chr2R	21738260	21738307	chr2R	21747440	21747448	roo	7	9166	0.5	1.0	0.8	3.9	9188	chr2R	21738260	intergenic	not near genes	chr2R	21742854	intergenic	not near genes	chr2R	21747448	intergenic	not near genes	chr2R_7_21740001	chr2R_21740001	RAL-832
741	chr2R	21753072	21753097	chr2R	21753571	21753596	roo	9	497	2.0	5.0	3.5	2.0	524	chr2R	21753072	intergenic	not near genes	chr2R	21753334	intergenic	not near genes	chr2R	21753596	intergenic	not near genes	chr2R_9_21750001	chr2R_21750001	RAL-832
751	chr2R	22360375	22360395	chr2R	22360828	22360830	jockey	4	448	5.5	1.5	3.5	0.9	455	chr2R	22360375	intron	Liprin-gamma -	chr2R	22360602	intron	Liprin-gamma -	chr2R	22360830	intron	Liprin-gamma -	chr2R_4_22360001	chr2R_22360001	RAL-832
754	chr2R	22580433	22580445	chr2R	22586600	22586614	diver	5	6169	0.5	1.0	0.8	2.8	6181	chr2R	22580433	intron	dnr1 -	chr2R	22583524	intron	dnr1 -	chr2R	22586614	intron	dnr1 -	chr2R_5_22580001	chr2R_22580001	RAL-832
755	chr2R	22774966	22774977	chr2R	22775386	22775402	jockey	5	427	7.5	5.0	6.2	0.7	436	chr2R	22774966	intron	CG42260 -	chr2R	22775184	intron	CG42260 -	chr2R	22775402	intron	CG42260 -	chr2R_5_22775001	chr2R_22775001	RAL-832
756	chr2R	22774980	22774996	chr2R	22775378	22775435	jockey	6	427	4.0	4.5	4.2	1.2	455	chr2R	22774980	intron	CG42260 -	chr2R	22775208	intron	CG42260 -	chr2R	22775435	intron	CG42260 -	chr2R_6_22775001	chr2R_22775001	RAL-832
764	chr2R	23402589	23402607	chr2R	23407685	23407703	flea	9	5095	11.5	9.0	10.2	0.8	5114	chr2R	23402589	intergenic	CG3520 -	chr2R	23405146	intergenic	not near genes	chr2R	23407703	intergenic	not near genes	chr2R_9_23405001	chr2R_23405001	RAL-832
765	chr2R	23402608	23402642	chr2R	23407683	23407721	flea	6	5084	5.5	8.0	6.8	0.8	5113	chr2R	23402608	intergenic	CG3520 -	chr2R	23405164	intergenic	not near genes	chr2R	23407721	intergenic	not near genes	chr2R_6_23405001	chr2R_23405001	RAL-832
774	chr2R	24177215	24177262	chr2R	24184720	24184736	412	14	7497	9.0	4.0	6.5	1.9	7521	chr2R	24177215	3` UTR	Nop60B +	chr2R	24180976	intron	Nop60B +	chr2R	24184736	3` UTR	Nop60B +	chr2R_14_24180001	chr2R_24180001	RAL-832
775	chr2R	24353417	24353461	chr2R	24361788	24361798	roo	6	8366	2.0	3.5	2.8	1.6	8381	chr2R	24353417	intron,intron	bs +,CR44811 -	chr2R	24357608	intron,intron	bs +,CR44811 -	chr2R	24361798	intron,intron	bs +,CR44811 -	chr2R_6_24355001	chr2R_24355001	RAL-832
777	chr2R	24727890	24727914	chr2R	24735408	24735432	mdg1	5	7512	0.5	2.0	1.2	2.3	7542	chr2R	24727890	intron	Mid1 -	chr2R	24731661	intron	Mid1 -	chr2R	24735432	intron	Mid1 -	chr2R_5_24730001	chr2R_24730001	RAL-832
782	chr2R	25141675	25141684	chr2R	25159345	25159374	roo	5	17697	5.0	4.5	4.8	0.9	17699	chr2R	25141675	intergenic	not near genes	chr2R	25150524	intergenic	not near genes	chr2R	25159374	intergenic	not near genes	chr2R_5_25150001	chr2R_25150001	RAL-832
789	chr3L	110191	110245	chr3L	119378	119406	roo	12	9180	5.5	2.5	4.0	2.4	9215	chr3L	110191	intergenic	not near genes	chr3L	114798	intergenic	not near genes	chr3L	119406	intergenic	not near genes	chr3L_12_110001	chr3L_110001	RAL-832
791	chr3L	402697	402715	chr3L	409743	409787	297	6	7062	0.0	4.5	2.2	1.9	7090	chr3L	402697	intergenic	not near genes	chr3L	406242	intergenic	not near genes	chr3L	409787	intergenic	not near genes	chr3L_6_405001	chr3L_405001	RAL-832
794	chr3L	789897	789944	chr3L	790402	790449	roo	14	502	3.0	5.0	4.0	2.8	552	chr3L	789897	intergenic	not near genes	chr3L	790173	intergenic	not near genes	chr3L	790449	intergenic	not near genes	chr3L_14_790001	chr3L_790001	RAL-832
795	chr3L	925160	925208	chr3L	932606	932640	mdg1	15	7434	1.5	4.0	2.8	3.9	7480	chr3L	925160	intron	Glut1 +	chr3L	928900	intron	Glut1 +	chr3L	932640	intron	Glut1 +	chr3L_15_925001	chr3L_925001	RAL-832
797	chr3L	939769	939792	chr3L	940893	940933	jockey	7	1130	3.0	8.0	5.5	1.1	1164	chr3L	939769	intron	Glut1 +	chr3L	940351	intron	Glut1 +	chr3L	940933	intron	Glut1 +	chr3L_7_940001	chr3L_940001	RAL-832
807	chr3L	1506004	1506031	chr3L	1513599	1513624	17.6	9	7603	5.0	4.0	4.5	1.6	7620	chr3L	1506004	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513624	intron,intron	Psa +,cue -	chr3L_9_1505001	chr3L_1505001	RAL-832
813	chr3L	1740863	1740880	chr3L	1741101	1741107	pogo	5	238	6.0	7.0	6.5	0.7	244	chr3L	1740863	intron	Gk +	chr3L	1740985	intron	Gk +	chr3L	1741107	intron	Gk +	chr3L_5_1740001	chr3L_1740001	RAL-832
820	chr3L	2447489	2447527	chr3L	2456665	2456702	roo	6	9170	5.0	1.5	3.2	1.4	9213	chr3L	2447489	intron	CG45186 +	chr3L	2452096	intron	CG45186 +	chr3L	2456702	intron	CG45186 +	chr3L_6_2450001	chr3L_2450001	RAL-832
833	chr3L	2927847	2927865	chr3L	2936121	2936161	Tirant	5	8281	3.5	4.0	3.8	1.0	8314	chr3L	2927847	intron	Shab +	chr3L	2932004	intron	Shab +	chr3L	2936161	intron	Shab +	chr3L_5_2930001	chr3L_2930001	RAL-832
834	chr3L	2966703	2966712	chr3L	2974145	2974157	mdg1	4	7444	4.5	0.0	2.2	1.2	7454	chr3L	2966703	intergenic	not near genes	chr3L	2970430	intergenic	not near genes	chr3L	2974157	intergenic	not near genes	chr3L_4_2970001	chr3L_2970001	RAL-832
835	chr3L	3051728	3051753	chr3L	3051990	3052011	pogo	9	257	9.5	1.5	5.5	1.4	283	chr3L	3051728	3` UTR	CG32485 +	chr3L	3051870	intergenic	CG32485 +	chr3L	3052011	intergenic	CG32485 +	chr3L_9_3050001	chr3L_3050001	RAL-832
838	chr3L	3281454	3281469	chr3L	3281963	3281979	Doc	5	510	1.0	4.5	2.8	1.3	525	chr3L	3281454	intron	CG12017 +	chr3L	3281716	intron	CG12017 +	chr3L	3281979	intron	CG12017 +	chr3L_5_3280001	chr3L_3280001	RAL-832
844	chr3L	3601284	3601331	chr3L	3606615	3606646	copia	7	5323	2.0	4.0	3.0	1.8	5362	chr3L	3601284	intron	Eip63E +	chr3L	3603965	intron	Eip63E +	chr3L	3606646	intron	Eip63E +	chr3L_7_3600001	chr3L_3600001	RAL-832
852	chr3L	3833725	3833754	chr3L	3833978	3834015	pogo	5	256	4.5	1.5	3.0	1.2	290	chr3L	3833725	intron	enc +	chr3L	3833870	intron	enc +	chr3L	3834015	intron	enc +	chr3L_5_3830001	chr3L_3830001	RAL-832
859	chr3L	4328738	4328763	chr3L	4336239	4336281	412	4	7511	0.0	4.5	2.2	1.2	7543	chr3L	4328738	intron	Cip4 -	chr3L	4332510	intron	Cip4 -	chr3L	4336281	exon	Cip4 -	chr3L_4_4330001	chr3L_4330001	RAL-832
866	chr3L	5034136	5034192	chr3L	5043308	5043364	roo	9	9168	2.5	4.0	3.2	2.1	9228	chr3L	5034136	intron	Con -	chr3L	5038750	intron	Con -	chr3L	5043364	intron	Con -	chr3L_9_5035001	chr3L_5035001	RAL-832
867	chr3L	5045455	5045472	chr3L	5050236	5050272	Doc	7	4784	6.0	5.0	5.5	1.1	4817	chr3L	5045455	intron	Con -	chr3L	5047864	intron	Con -	chr3L	5050272	intron	Con -	chr3L_7_5045001	chr3L_5045001	RAL-832
873	chr3L	5299145	5299180	chr3L	5306586	5306636	Quasimodo	16	7453	3.0	4.5	3.8	3.3	7491	chr3L	5299145	intergenic	not near genes	chr3L	5302890	intergenic	not near genes	chr3L	5306636	intergenic	not near genes	chr3L_16_5300001	chr3L_5300001	RAL-832
881	chr3L	5537701	5537750	chr3L	5538063	5538101	jockey	7	351	2.5	4.5	3.5	1.6	400	chr3L	5537701	intergenic	not near genes	chr3L	5537901	intergenic	not near genes	chr3L	5538101	intergenic	CG10625 -	chr3L_7_5535001	chr3L_5535001	RAL-832
884	chr3L	5910013	5910062	chr3L	5910274	5910323	pogo	18	258	5.5	3.5	4.5	3.3	310	chr3L	5910013	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910323	intron	CG13288 +	chr3L_18_5910001	chr3L_5910001	RAL-832
885	chr3L	6001668	6001716	chr3L	6004388	6004436	jockey	15	2717	2.0	1.0	1.5	6.0	2768	chr3L	6001668	intron	PVRAP +	chr3L	6003052	intron	PVRAP +	chr3L	6004436	intron	PVRAP +	chr3L_15_6000001	chr3L_6000001	RAL-832
886	chr3L	6040354	6040376	chr3L	6042729	6042752	Doc	6	2375	3.0	4.5	3.8	1.2	2398	chr3L	6040354	intergenic	Jon65Aiv +	chr3L	6041553	intergenic	not near genes	chr3L	6042752	intergenic	not near genes	chr3L_6_6040001	chr3L_6040001	RAL-832
891	chr3L	6220920	6220945	chr3L	6230071	6230094	roo	5	9163	4.0	5.0	4.5	0.9	9174	chr3L	6220920	5` UTR	pncr008:3L +	chr3L	6225507	intergenic	not near genes	chr3L	6230094	intergenic	not near genes	chr3L_5_6225001	chr3L_6225001	RAL-832
894	chr3L	6335016	6335036	chr3L	6335495	6335517	297	4	482	4.0	4.0	4.0	0.8	501	chr3L	6335016	intron	CG13300 -	chr3L	6335266	intron	CG13300 -	chr3L	6335517	intron	CG13300 -	chr3L_4_6335001	chr3L_6335001	RAL-832
895	chr3L	6405637	6405691	chr3L	6432121	6432160	roo	7	26482	4.0	3.5	3.8	1.5	26523	chr3L	6405637	intron	CG42747 +	chr3L	6418898	intron	CG42747 +	chr3L	6432160	intron	CG42747 +	chr3L_7_6415001	chr3L_6415001	RAL-832
898	chr3L	6781104	6781152	chr3L	6783137	6783182	Doc	8	2032	6.0	0.0	3.0	2.0	2078	chr3L	6781104	intergenic	not near genes	chr3L	6782143	intergenic	not near genes	chr3L	6783182	intergenic	not near genes	chr3L_8_6780001	chr3L_6780001	RAL-832
902	chr3L	6887500	6887546	chr3L	6895011	6895042	roo	14	7506	4.5	8.0	6.2	1.9	7542	chr3L	6887500	intergenic	not near genes	chr3L	6891271	intergenic	not near genes	chr3L	6895042	intergenic	not near genes	chr3L_14_6890001	chr3L_6890001	RAL-832
906	chr3L	7377296	7377345	chr3L	7380421	7380459	297	8	3122	5.0	2.5	3.8	1.7	3163	chr3L	7377296	intron	SMSr -	chr3L	7378878	intron	SMSr -	chr3L	7380459	intron	SMSr -	chr3L_8_7375001	chr3L_7375001	RAL-832
908	chr3L	7498752	7498785	chr3L	7503539	7503571	F-element	9	4790	5.0	5.0	5.0	1.5	4819	chr3L	7498752	5` UTR	CG8539 -	chr3L	7501162	intergenic	not near genes	chr3L	7503571	intergenic	not near genes	chr3L_9_7500001	chr3L_7500001	RAL-832
912	chr3L	7793719	7793736	chr3L	7800762	7800806	297	8	7064	4.0	6.5	5.2	1.3	7087	chr3L	7793719	intron	CG32369 -	chr3L	7797262	intron	CG32369 -	chr3L	7800806	intron	CG32369 -	chr3L_8_7795001	chr3L_7795001	RAL-832
915	chr3L	7886503	7886536	chr3L	7889040	7889062	Stalker4	10	2529	2.5	3.0	2.8	2.6	2559	chr3L	7886503	intron	CG32365 +	chr3L	7887782	intron	CG32365 +	chr3L	7889062	intron	CG32365 +	chr3L_10_7885001	chr3L_7885001	RAL-832
916	chr3L	7916823	7916827	chr3L	7926014	7926018	roo	4	9191	8.0	3.5	5.8	0.6	9195	chr3L	7916823	3` UTR	syd -	chr3L	7921420	intron	syd -	chr3L	7926018	3` UTR	syd -	chr3L_4_7920001	chr3L_7920001	RAL-832
917	chr3L	7916829	7916860	chr3L	7926005	7926051	roo	9	9183	4.5	1.5	3.0	2.2	9222	chr3L	7916829	3` UTR	syd -	chr3L	7921440	intron	syd -	chr3L	7926051	3` UTR	syd -	chr3L_9_7920001	chr3L_7920001	RAL-832
919	chr3L	7985362	7985388	chr3L	7987690	7987719	NOF	9	2333	5.5	4.0	4.8	1.6	2357	chr3L	7985362	intron	nmo +	chr3L	7986540	intron	nmo +	chr3L	7987719	intron	nmo +	chr3L_9_7985001	chr3L_7985001	RAL-832
936	chr3L	9076935	9076952	chr3L	9084504	9084512	412	5	7566	3.0	4.0	3.5	1.1	7577	chr3L	9076935	exon	Tequila +	chr3L	9080724	intron	Tequila +	chr3L	9084512	exon	Tequila +	chr3L_5_9080001	chr3L_9080001	RAL-832
941	chr3L	9164681	9164727	chr3L	9166167	9166199	hobo	12	1475	2.0	1.0	1.5	4.8	1518	chr3L	9164681	intron	Rdl -	chr3L	9165440	intron	Rdl -	chr3L	9166199	intron	Rdl -	chr3L_12_9165001	chr3L_9165001	RAL-832
943	chr3L	9270599	9270612	chr3L	9278374	9278380	roo	5	7773	6.5	3.0	4.8	0.9	7781	chr3L	9270599	intron	GluRIB +	chr3L	9274490	intron	GluRIB +	chr3L	9278380	intron	GluRIB +	chr3L_5_9270001	chr3L_9270001	RAL-832
944	chr3L	9270613	9270644	chr3L	9278371	9278410	roo	5	7767	2.0	2.5	2.2	1.6	7797	chr3L	9270613	intron	GluRIB +	chr3L	9274512	intron	GluRIB +	chr3L	9278410	exon	GluRIB +	chr3L_5_9270001	chr3L_9270001	RAL-832
946	chr3L	9443490	9443521	chr3L	9445301	9445307	S-element	4	1799	8.0	1.5	4.8	0.7	1817	chr3L	9443490	intron	CG33926 +	chr3L	9444398	intron	CG33926 +	chr3L	9445307	intron	CG33926 +	chr3L_4_9440001	chr3L_9440001	RAL-832
947	chr3L	9501684	9501723	chr3L	9502187	9502219	roo	6	499	2.5	3.0	2.8	1.6	535	chr3L	9501684	intron	path -	chr3L	9501952	intron	path -	chr3L	9502219	intron	path -	chr3L_6_9500001	chr3L_9500001	RAL-832
952	chr3L	9571885	9571904	chr3L	9572253	9572253	jockey	6	363	2.5	0.0	1.2	2.7	368	chr3L	9571885	intron	CG42673 +	chr3L	9572069	intron	CG42673 +	chr3L	9572253	intron	CG42673 +	chr3L_6_9570001	chr3L_9570001	RAL-832
958	chr3L	9929663	9929701	chr3L	9938463	9938480	roo	7	8796	1.0	5.5	3.2	1.7	8817	chr3L	9929663	intron	CG34356 +	chr3L	9934072	intron	CG34356 +	chr3L	9938480	intron	CG34356 +	chr3L_7_9930001	chr3L_9930001	RAL-832
970	chr3L	10414946	10414955	chr3L	10417338	10417347	Doc	4	2391	8.0	6.0	7.0	0.5	2401	chr3L	10414946	intergenic	CG12362 +	chr3L	10416146	intergenic	not near genes	chr3L	10417347	intergenic	not near genes	chr3L_4_10415001	chr3L_10415001	RAL-832
982	chr3L	11105281	11105291	chr3L	11107012	11107021	X-element	4	1731	6.0	0.0	3.0	1.0	1740	chr3L	11105281	intergenic	not near genes	chr3L	11106151	intergenic	not near genes	chr3L	11107021	3` UTR	CG32073 -	chr3L_4_11105001	chr3L_11105001	RAL-832
983	chr3L	11105292	11105325	chr3L	11107008	11107021	X-element	5	1712	3.0	0.0	1.5	2.0	1729	chr3L	11105292	intergenic	not near genes	chr3L	11106156	intergenic	not near genes	chr3L	11107021	3` UTR	CG32073 -	chr3L_5_11105001	chr3L_11105001	RAL-832
989	chr3L	11264464	11264493	chr3L	11271416	11271455	17.6	8	6963	3.5	1.5	2.5	2.3	6991	chr3L	11264464	intergenic	not near genes	chr3L	11267960	intergenic	not near genes	chr3L	11271455	intergenic	not near genes	chr3L_8_11265001	chr3L_11265001	RAL-832
1000	chr3L	11723078	11723085	chr3L	11727887	11727895	Doc	6	4812	6.5	8.0	7.2	0.7	4817	chr3L	11723078	3` UTR	Bmcp +	chr3L	11725486	intron	Bmcp +	chr3L	11727895	3` UTR	Bmcp +	chr3L_6_11725001	chr3L_11725001	RAL-832
1001	chr3L	11723087	11723111	chr3L	11727877	11727911	Doc	12	4805	1.0	6.5	3.8	2.5	4824	chr3L	11723087	3` UTR	Bmcp +	chr3L	11725499	intron	Bmcp +	chr3L	11727911	3` UTR	Bmcp +	chr3L_12_11725001	chr3L_11725001	RAL-832
1012	chr3L	11864552	11864576	chr3L	11865854	11865869	pogo	5	1300	0.0	7.0	3.5	1.1	1317	chr3L	11864552	intron	CG44837 -	chr3L	11865210	intron	CG44837 -	chr3L	11865869	intron	CG44837 -	chr3L_5_11865001	chr3L_11865001	RAL-832
1030	chr3L	12919284	12919300	chr3L	12924763	12924777	Rt1c	5	5476	2.0	3.0	2.5	1.4	5493	chr3L	12919284	intergenic	not near genes	chr3L	12922030	intergenic	not near genes	chr3L	12924777	intergenic	not near genes	chr3L_5_12920001	chr3L_12920001	RAL-832
1031	chr3L	12957783	12957815	chr3L	12962279	12962287	copia	10	4493	8.0	5.0	6.5	1.3	4504	chr3L	12957783	intergenic	not near genes	chr3L	12960035	intergenic	not near genes	chr3L	12962287	intergenic	not near genes	chr3L_10_12960001	chr3L_12960001	RAL-832
1049	chr3L	13804537	13804568	chr3L	13822831	13822855	roo	8	18295	4.0	3.0	3.5	1.8	18318	chr3L	13804537	intergenic	not near genes	chr3L	13813696	intergenic	not near genes	chr3L	13822855	intergenic	not near genes	chr3L_8_13810001	chr3L_13810001	RAL-832
1055	chr3L	14245553	14245594	chr3L	14245662	14245694	1360	9	106	5.0	5.0	5.0	1.5	141	chr3L	14245553	3` UTR	CR44561 -	chr3L	14245624	3` UTR	CR44561 -	chr3L	14245694	intergenic	CR44561 -,CR44560 +	chr3L_9_14245001	chr3L_14245001	RAL-832
1056	chr3L	14267367	14267401	chr3L	14271812	14271834	F-element	11	4442	3.0	3.5	3.2	2.6	4467	chr3L	14267367	intergenic	not near genes	chr3L	14269600	intergenic	not near genes	chr3L	14271834	intergenic	not near genes	chr3L_11_14265001	chr3L_14265001	RAL-832
1057	chr3L	14295978	14296007	chr3L	14296470	14296492	roo	6	496	0.5	5.5	3.0	1.5	514	chr3L	14295978	intron	fz +	chr3L	14296235	intron	fz +	chr3L	14296492	intron	fz +	chr3L_6_14295001	chr3L_14295001	RAL-832
1060	chr3L	14468432	14468475	chr3L	14473658	14473698	copia	7	5223	5.5	2.5	4.0	1.4	5266	chr3L	14468432	intron	bbg -	chr3L	14471065	intron	bbg -	chr3L	14473698	intron	bbg -	chr3L_7_14470001	chr3L_14470001	RAL-832
1071	chr3L	15085040	15085062	chr3L	15086219	15086243	1360	4	1181	7.0	2.0	4.5	0.7	1203	chr3L	15085040	intron	cp309 -	chr3L	15085642	intron	cp309 -	chr3L	15086243	intron	cp309 -	chr3L_4_15085001	chr3L_15085001	RAL-832
1077	chr3L	15295769	15295801	chr3L	15298612	15298664	gypsy5	8	2857	6.5	4.5	5.5	1.2	2895	chr3L	15295769	intergenic	not near genes	chr3L	15297216	intergenic	not near genes	chr3L	15298664	intergenic	Best4 +	chr3L_8_15295001	chr3L_15295001	RAL-832
1085	chr3L	15423750	15423784	chr3L	15426604	15426648	opus	12	2863	4.5	6.5	5.5	1.8	2898	chr3L	15423750	intergenic	not near genes	chr3L	15425199	intergenic	not near genes	chr3L	15426648	intergenic	not near genes	chr3L_12_15425001	chr3L_15425001	RAL-832
1090	chr3L	15554902	15554949	chr3L	15556709	15556756	S-element	16	1805	6.0	2.0	4.0	3.2	1854	chr3L	15554902	intron	AGO2 +	chr3L	15555829	intron	AGO2 +	chr3L	15556756	intron	AGO2 +	chr3L_16_15555001	chr3L_15555001	RAL-832
1098	chr3L	15929184	15929190	chr3L	15938351	15938357	roo	6	9166	8.5	4.0	6.2	0.8	9173	chr3L	15929184	intron	Pka-C3 -	chr3L	15933770	intron	Pka-C3 -	chr3L	15938357	intron	Pka-C3 -	chr3L_6_15930001	chr3L_15930001	RAL-832
1099	chr3L	15929196	15929223	chr3L	15938348	15938390	roo	11	9162	6.0	4.0	5.0	1.8	9194	chr3L	15929196	intron	Pka-C3 -	chr3L	15933793	intron	Pka-C3 -	chr3L	15938390	intron	Pka-C3 -	chr3L_11_15930001	chr3L_15930001	RAL-832
1106	chr3L	16184096	16184101	chr3L	16188928	16188935	X-element	4	4834	10.0	2.0	6.0	0.6	4839	chr3L	16184096	intergenic	not near genes	chr3L	16186516	intergenic	not near genes	chr3L	16188935	intergenic	not near genes	chr3L_4_16185001	chr3L_16185001	RAL-832
1107	chr3L	16184102	16184141	chr3L	16188926	16188949	X-element	7	4829	4.5	2.0	3.2	1.7	4847	chr3L	16184102	intergenic	not near genes	chr3L	16186526	intergenic	not near genes	chr3L	16188949	intergenic	not near genes	chr3L_7_16185001	chr3L_16185001	RAL-832
1111	chr3L	16443843	16443860	chr3L	16446203	16446220	Doc	6	2358	2.0	2.5	2.2	1.9	2377	chr3L	16443843	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445032	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446220	intron,intron	CG33158 +,dsx-c73A -	chr3L_6_16445001	chr3L_16445001	RAL-832
1112	chr3L	16443862	16443876	chr3L	16446187	16446220	Doc	6	2345	1.5	2.0	1.8	2.1	2358	chr3L	16443862	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445041	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446220	intron,intron	CG33158 +,dsx-c73A -	chr3L_6_16445001	chr3L_16445001	RAL-832
1115	chr3L	16493998	16494011	chr3L	16494497	16494532	jockey	4	516	1.0	2.5	1.8	1.4	534	chr3L	16493998	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494265	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494532	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_4_16490001	chr3L_16490001	RAL-832
1120	chr3L	16616516	16616539	chr3L	16621837	16621879	297	7	5331	3.0	1.5	2.2	2.2	5363	chr3L	16616516	3` UTR	Abl -	chr3L	16619198	3` UTR	Abl -	chr3L	16621879	3` UTR	Abl -	chr3L_7_16615001	chr3L_16615001	RAL-832
1121	chr3L	16684000	16684044	chr3L	16689241	16689285	copia	11	5240	3.5	2.5	3.0	2.8	5285	chr3L	16684000	intron,intron	Lasp -,CG43954 -	chr3L	16686642	intron,intron	Lasp -,CG43954 -	chr3L	16689285	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_11_16685001	chr3L_16685001	RAL-832
1131	chr3L	16945728	16945760	chr3L	16954880	16954901	roo	8	9148	1.5	2.5	2.0	2.7	9173	chr3L	16945728	exon	Obp73a +	chr3L	16950314	intergenic	not near genes	chr3L	16954901	5` UTR	Nc73EF +	chr3L_8_16950001	chr3L_16950001	RAL-832
1134	chr3L	17034917	17034951	chr3L	17035125	17035158	G2	12	206	2.5	6.0	4.2	2.3	241	chr3L	17034917	intergenic	not near genes	chr3L	17035038	intergenic	not near genes	chr3L	17035158	intergenic	not near genes	chr3L_12_17035001	chr3L_17035001	RAL-832
1135	chr3L	17084985	17085036	chr3L	17094154	17094187	roo	15	9165	5.0	5.0	5.0	2.5	9202	chr3L	17084985	intron	Rbp6 -	chr3L	17089586	intron	Rbp6 -	chr3L	17094187	intron	Rbp6 -	chr3L_15_17085001	chr3L_17085001	RAL-832
1143	chr3L	17730836	17730881	chr3L	17738186	17738220	mdg1	12	7345	8.5	3.5	6.0	1.7	7384	chr3L	17730836	intron	Ccn +	chr3L	17734528	intron	Ccn +	chr3L	17738220	intron	Ccn +	chr3L_12_17730001	chr3L_17730001	RAL-832
1149	chr3L	17918353	17918403	chr3L	17921176	17921226	opus	8	2822	0.5	3.5	2.0	2.7	2873	chr3L	17918353	intergenic	not near genes	chr3L	17919790	intergenic	not near genes	chr3L	17921226	intergenic	not near genes	chr3L_8_17915001	chr3L_17915001	RAL-832
1154	chr3L	18047686	18047738	chr3L	18056763	18056784	roo	14	9068	2.0	5.0	3.5	3.1	9098	chr3L	18047686	intron	Eip75B -	chr3L	18052235	intron	Eip75B -	chr3L	18056784	intron	Eip75B -	chr3L_14_18050001	chr3L_18050001	RAL-832
1173	chr3L	18528608	18528653	chr3L	18537789	18537829	roo	11	9177	4.0	6.0	5.0	1.8	9221	chr3L	18528608	intergenic	not near genes	chr3L	18533218	intergenic	not near genes	chr3L	18537829	intergenic	not near genes	chr3L_11_18530001	chr3L_18530001	RAL-832
1174	chr3L	18593930	18593977	chr3L	18595930	18595934	Doc	17	1993	3.5	2.0	2.8	4.5	2004	chr3L	18593930	intergenic	term -	chr3L	18594932	intergenic	not near genes	chr3L	18595934	intergenic	CR45389 +	chr3L_17_18590001	chr3L_18590001	RAL-832
1178	chr3L	18710740	18710789	chr3L	18718712	18718761	Stalker2	15	7970	9.0	5.0	7.0	1.9	8021	chr3L	18710740	intergenic	not near genes	chr3L	18714750	intergenic	not near genes	chr3L	18718761	intergenic	not near genes	chr3L_15_18710001	chr3L_18710001	RAL-832
1179	chr3L	18772389	18772438	chr3L	18781090	18781130	roo	17	8695	4.5	2.5	3.5	3.8	8741	chr3L	18772389	intron	ftz-f1 -	chr3L	18776760	intron	ftz-f1 -	chr3L	18781130	intron	ftz-f1 -	chr3L_17_18775001	chr3L_18775001	RAL-832
1191	chr3L	19008839	19008878	chr3L	19009178	19009223	jockey	6	336	1.0	0.5	0.8	3.3	384	chr3L	19008839	intron	nkd -	chr3L	19009031	intron	nkd -	chr3L	19009223	intron	nkd -	chr3L_6_19005001	chr3L_19005001	RAL-832
1196	chr3L	19117032	19117072	chr3L	19124492	19124513	mdg1	4	7453	3.5	6.0	4.8	0.7	7481	chr3L	19117032	intron	CG14082 -	chr3L	19120772	intron	CG14082 -	chr3L	19124513	intron	CG14082 -	chr3L_4_19120001	chr3L_19120001	RAL-832
1205	chr3L	19820291	19820299	chr3L	19827850	19827868	412	4	7564	4.0	2.5	3.2	1.0	7577	chr3L	19820291	intron	Deaf1 +	chr3L	19824080	intron	Deaf1 +	chr3L	19827868	intron	Deaf1 +	chr3L_4_19820001	chr3L_19820001	RAL-832
1206	chr3L	19861839	19861853	chr3L	19863618	19863661	S-element	4	1800	0.5	5.5	3.0	1.0	1822	chr3L	19861839	5` UTR	CR45433 +	chr3L	19862750	intergenic	not near genes	chr3L	19863661	intergenic	not near genes	chr3L_4_19860001	chr3L_19860001	RAL-832
1214	chr3L	20113660	20113688	chr3L	20122919	20122950	roo	9	9268	4.5	5.5	5.0	1.5	9290	chr3L	20113660	intergenic	not near genes	chr3L	20118305	intergenic	not near genes	chr3L	20122950	intergenic	not near genes	chr3L_9_20115001	chr3L_20115001	RAL-832
1218	chr3L	20257314	20257359	chr3L	20258453	20258460	pogo	6	1133	1.0	3.5	2.2	1.9	1146	chr3L	20257314	intron	rdgC +	chr3L	20257887	intron	rdgC +	chr3L	20258460	intron	rdgC +	chr3L_6_20255001	chr3L_20255001	RAL-832
1225	chr3L	20476737	20476769	chr3L	20484356	20484388	springer	10	7616	7.5	3.5	5.5	1.5	7651	chr3L	20476737	3` UTR	isoQC +	chr3L	20480562	intergenic	not near genes	chr3L	20484388	3` UTR	ZnT77C -	chr3L_10_20480001	chr3L_20480001	RAL-832
1239	chr3L	21151847	21151895	chr3L	21156951	21156979	flea	12	5101	0.5	5.0	2.8	3.2	5132	chr3L	21151847	intron	Ac78C -	chr3L	21154413	intron	Ac78C -	chr3L	21156979	intron	Ac78C -	chr3L_12_21150001	chr3L_21150001	RAL-832
1240	chr3L	21306138	21306161	chr3L	21315317	21315329	roo	7	9177	4.0	1.5	2.8	1.8	9191	chr3L	21306138	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310734	intron	Pc -	chr3L	21315329	3` UTR	Pc -	chr3L_7_21310001	chr3L_21310001	RAL-832
1243	chr3L	21458321	21458348	chr3L	21458436	21458453	INE-1	5	104	9.0	1.5	5.2	0.8	132	chr3L	21458321	intergenic	not near genes	chr3L	21458387	intergenic	not near genes	chr3L	21458453	intergenic	not near genes	chr3L_5_21455001	chr3L_21455001	RAL-832
1257	chr3L	22099658	22099676	chr3L	22105864	22105872	3S18	6	6202	7.5	7.0	7.2	0.7	6214	chr3L	22099658	intergenic	not near genes	chr3L	22102765	intergenic	not near genes	chr3L	22105872	intergenic	not near genes	chr3L_6_22100001	chr3L_22100001	RAL-832
1258	chr3L	22099678	22099699	chr3L	22105862	22105905	3S18	10	6193	6.0	6.5	6.2	1.4	6227	chr3L	22099678	intergenic	not near genes	chr3L	22102792	intergenic	not near genes	chr3L	22105905	intergenic	not near genes	chr3L_10_22100001	chr3L_22100001	RAL-832
1265	chr3L	22555760	22555799	chr3L	22563238	22563269	blood	4	7481	1.0	0.5	0.8	2.2	7509	chr3L	22555760	intergenic	not near genes	chr3L	22559514	intergenic	not near genes	chr3L	22563269	intergenic	not near genes	chr3L_4_22555001	chr3L_22555001	RAL-832
1266	chr3L	22617169	22617215	chr3L	22624641	22624687	blood	11	7467	4.0	5.0	4.5	2.0	7518	chr3L	22617169	intron	CG14459 -	chr3L	22620928	intron	CG14459 -	chr3L	22624687	intron	CG14459 -	chr3L_11_22620001	chr3L_22620001	RAL-832
1267	chr3L	22761387	22761422	chr3L	22766824	22766834	Ivk	11	5443	2.0	5.5	3.8	2.3	5447	chr3L	22761387	intron	SPoCk +	chr3L	22764110	intron	SPoCk +	chr3L	22766834	intron	SPoCk +	chr3L_11_22760001	chr3L_22760001	RAL-832
1269	chr3L	22865980	22866005	chr3L	22867114	22867148	Doc	8	1144	5.5	4.0	4.8	1.4	1168	chr3L	22865980	intron	CG33170 +	chr3L	22866564	intron	CG33170 +	chr3L	22867148	intron	CG33170 +	chr3L_8_22865001	chr3L_22865001	RAL-832
1273	chr3L	22989841	22989889	chr3L	22996835	22996883	297	10	6990	3.0	1.0	2.0	3.3	7042	chr3L	22989841	intergenic	not near genes	chr3L	22993362	intergenic	not near genes	chr3L	22996883	intergenic	not near genes	chr3L_10_22990001	chr3L_22990001	RAL-832
1274	chr3L	24012397	24012429	chr3L	24020750	24020790	roo	8	8353	2.5	1.5	2.0	2.7	8393	chr3L	24012397	intergenic	not near genes	chr3L	24016594	intergenic	not near genes	chr3L	24020790	intergenic	not near genes	chr3L_8_24015001	chr3L_24015001	RAL-832
1275	chr3L	24791875	24791920	chr3L	24796674	24796681	Doc	10	4792	5.0	2.5	3.8	2.1	4806	chr3L	24791875	intergenic	not near genes	chr3L	24794278	intergenic	not near genes	chr3L	24796681	intergenic	not near genes	chr3L_10_24790001	chr3L_24790001	RAL-832
1276	chr3L	25628513	25628519	chr3L	25633279	25633285	F-element	6	4778	3.0	2.5	2.8	1.6	4772	chr3L	25628513	intron	CG41343 -	chr3L	25630899	intron	CG41343 -	chr3L	25633285	intron	CG41343 -	chr3L_6_25630001	chr3L_25630001	RAL-832
1281	chr3L	27980677	27980731	chr3L	27985495	27985534	Doc	5	4811	2.0	2.5	2.2	1.6	4857	chr3L	27980677	intron	CG17514 -	chr3L	27983106	intron	CG17514 -	chr3L	27985534	intron	CG17514 -	chr3L_5_27980001	chr3L_27980001	RAL-832
1284	chr3R	2424350	2424351	chr3R	21265634	21265642	BS	4	18841294	10.0	8.0	9.0	0.4	18841292	chr3R	2424350	intergenic	not near genes	chr3R	11844996	intron	CG6959 -	chr3R	21265642	intergenic	Rab1 -	chr3R_4_11840001	chr3R_11840001	RAL-832
1287	chr3R	4105022	4105071	chr3R	4110246	4110270	copia	7	5216	3.0	3.0	3.0	1.8	5248	chr3R	4105022	intergenic	not near genes	chr3R	4107646	intergenic	not near genes	chr3R	4110270	intergenic	not near genes	chr3R_7_4105001	chr3R_4105001	RAL-832
1289	chr3R	4206049	4206101	chr3R	4211644	4211646	mdg3	12	5583	4.5	4.5	4.5	2.2	5597	chr3R	4206049	intron	CG14636 -	chr3R	4208848	intron	CG14636 -	chr3R	4211646	intron	CG14636 -	chr3R_12_4205001	chr3R_4205001	RAL-832
1290	chr3R	4366755	4366789	chr3R	4375138	4375190	roo	14	8391	6.0	7.5	6.8	1.8	8435	chr3R	4366755	3` UTR	CG1090 +	chr3R	4370972	intergenic	not near genes	chr3R	4375190	5` UTR	CR44922 +	chr3R_14_4370001	chr3R_4370001	RAL-832
1291	chr3R	4408403	4408439	chr3R	4412719	4412763	Juan	10	4318	9.0	7.0	8.0	1.1	4360	chr3R	4408403	intron	CG32944 -	chr3R	4410583	intron	CG32944 -	chr3R	4412763	intron	CG32944 -	chr3R_10_4410001	chr3R_4410001	RAL-832
1292	chr3R	4609531	4609581	chr3R	4610715	4610745	1360	12	1171	2.0	6.0	4.0	2.4	1214	chr3R	4609531	intergenic	not near genes	chr3R	4610138	intergenic	not near genes	chr3R	4610745	intergenic	not near genes	chr3R_12_4610001	chr3R_4610001	RAL-832
1293	chr3R	4636583	4636627	chr3R	4637021	4637067	INE-1	14	436	3.5	2.5	3.0	3.5	484	chr3R	4636583	intergenic	not near genes	chr3R	4636825	intergenic	not near genes	chr3R	4637067	intergenic	not near genes	chr3R_14_4635001	chr3R_4635001	RAL-832
1295	chr3R	4753224	4753266	chr3R	4757547	4757559	F-element	5	4313	4.5	3.0	3.8	1.0	4335	chr3R	4753224	intron,intron	atms +,CG44098 -	chr3R	4755392	intron,intron	atms +,CG44098 -	chr3R	4757559	intron,exon	atms +,CG44098 -	chr3R_5_4755001	chr3R_4755001	RAL-832
1296	chr3R	4759723	4759748	chr3R	4761239	4761244	hopper2	4	1511	2.5	10.5	6.5	0.5	1521	chr3R	4759723	intron,intron	atms +,CG44098 -	chr3R	4760484	intron,intron	atms +,CG44098 -	chr3R	4761244	intron,intron	atms +,CG44098 -	chr3R_4_4760001	chr3R_4760001	RAL-832
1301	chr3R	5045832	5045878	chr3R	5052954	5052984	HMS-Beagle	7	7117	2.5	4.5	3.5	1.6	7152	chr3R	5045832	intron	CR43635 -	chr3R	5049408	intergenic	not near genes	chr3R	5052984	intergenic	CR45588 -	chr3R_7_5045001	chr3R_5045001	RAL-832
1302	chr3R	5067960	5068013	chr3R	5073497	5073550	mdg3	17	5531	4.0	3.0	3.5	3.8	5590	chr3R	5067960	intergenic	not near genes	chr3R	5070755	intergenic	not near genes	chr3R	5073550	intergenic	not near genes	chr3R_17_5070001	chr3R_5070001	RAL-832
1306	chr3R	5338388	5338423	chr3R	5343583	5343605	Rt1c	6	5192	3.0	3.5	3.2	1.4	5217	chr3R	5338388	intron	mtd -	chr3R	5340996	intron	mtd -	chr3R	5343605	intron	mtd -	chr3R_6_5340001	chr3R_5340001	RAL-832
1307	chr3R	5445948	5445975	chr3R	5452428	5452455	Burdock	7	6477	7.0	4.0	5.5	1.1	6507	chr3R	5445948	intron	CG14669 +	chr3R	5449202	intron	CG14669 +	chr3R	5452455	intron	CG14669 +	chr3R_7_5445001	chr3R_5445001	RAL-832
1308	chr3R	5445979	5445992	chr3R	5452423	5452432	Burdock	4	6453	4.5	3.5	4.0	0.8	6453	chr3R	5445979	intron	CG14669 +	chr3R	5449206	intron	CG14669 +	chr3R	5452432	intron	CG14669 +	chr3R_4_5445001	chr3R_5445001	RAL-832
1313	chr3R	5746009	5746042	chr3R	5746270	5746298	pogo	10	254	1.5	7.0	4.2	1.9	289	chr3R	5746009	3` UTR	Madm +	chr3R	5746154	3` UTR	Madm +	chr3R	5746298	3` UTR	Madm +	chr3R_10_5745001	chr3R_5745001	RAL-832
1314	chr3R	5747000	5747014	chr3R	5753211	5753223	diver	4	6210	7.0	5.5	6.2	0.6	6223	chr3R	5747000	intergenic	Madm +	chr3R	5750112	intergenic	not near genes	chr3R	5753223	intergenic	CG2091 -	chr3R_4_5750001	chr3R_5750001	RAL-832
1315	chr3R	5747023	5747043	chr3R	5753208	5753254	diver	9	6201	3.5	5.0	4.2	1.7	6231	chr3R	5747023	intergenic	Madm +	chr3R	5750138	intergenic	not near genes	chr3R	5753254	intergenic	CG2091 -	chr3R_9_5750001	chr3R_5750001	RAL-832
1316	chr3R	5809112	5809142	chr3R	5809355	5809402	pogo	6	250	0.5	4.0	2.2	1.9	290	chr3R	5809112	3` UTR	CG11000 +	chr3R	5809257	3` UTR	CG11000 +	chr3R	5809402	3` UTR	CG11000 +	chr3R_6_5805001	chr3R_5805001	RAL-832
1317	chr3R	5822370	5822401	chr3R	5823547	5823588	1360	7	1186	3.0	3.0	3.0	1.8	1218	chr3R	5822370	3` UTR	CG2023 -	chr3R	5822979	3` UTR	CG2023 -	chr3R	5823588	3` UTR	CG2023 -	chr3R_7_5820001	chr3R_5820001	RAL-832
1320	chr3R	5927555	5927586	chr3R	5927804	5927825	pogo	6	246	1.0	3.5	2.2	1.9	270	chr3R	5927555	intron	CG34113 -	chr3R	5927690	intron	CG34113 -	chr3R	5927825	intron	CG34113 -	chr3R_6_5925001	chr3R_5925001	RAL-832
1325	chr3R	6121165	6121176	chr3R	6121377	6121396	BS	5	225	0.0	6.5	3.2	1.2	231	chr3R	6121165	intergenic	not near genes	chr3R	6121280	intergenic	not near genes	chr3R	6121396	intergenic	not near genes	chr3R_5_6120001	chr3R_6120001	RAL-832
1326	chr3R	6175156	6175205	chr3R	6182447	6182487	HMS-Beagle2	10	7285	2.0	1.0	1.5	4.0	7331	chr3R	6175156	intergenic	Osi1 +	chr3R	6178822	intron	CR45194 +	chr3R	6182487	intergenic	CR45194 +	chr3R_10_6175001	chr3R_6175001	RAL-832
1329	chr3R	6206298	6206307	chr3R	6206512	6206522	BS	4	226	2.5	2.5	2.5	1.1	224	chr3R	6206298	exon	Osi24 +	chr3R	6206410	intron	Osi24 +	chr3R	6206522	intron	Osi24 +	chr3R_4_6205001	chr3R_6205001	RAL-832
1331	chr3R	6510023	6510054	chr3R	6515109	6515155	jockey	7	5097	7.5	6.5	7.0	0.9	5132	chr3R	6510023	intergenic	not near genes	chr3R	6512589	intergenic	not near genes	chr3R	6515155	intergenic	not near genes	chr3R_7_6510001	chr3R_6510001	RAL-832
1333	chr3R	6737502	6737526	chr3R	6739293	6739328	Doc	6	1798	0.0	1.5	0.8	3.3	1826	chr3R	6737502	intron	pb -	chr3R	6738415	intron	pb -	chr3R	6739328	intron	pb -	chr3R_6_6735001	chr3R_6735001	RAL-832
1356	chr3R	7694565	7694608	chr3R	7713641	7713689	invader3	7	19079	2.0	1.5	1.8	2.5	19124	chr3R	7694565	3` UTR	Nlg1 +	chr3R	7704127	intergenic	not near genes	chr3R	7713689	intergenic	not near genes	chr3R_7_7700001	chr3R_7700001	RAL-832
1357	chr3R	7729466	7729496	chr3R	7737419	7737454	Stalker2	8	7950	3.5	7.0	5.2	1.3	7988	chr3R	7729466	intergenic	not near genes	chr3R	7733460	intergenic	not near genes	chr3R	7737454	intergenic	not near genes	chr3R_8_7730001	chr3R_7730001	RAL-832
1361	chr3R	7849620	7849668	chr3R	7850807	7850839	1360	9	1183	5.5	6.5	6.0	1.3	1219	chr3R	7849620	intron	CG34384 +	chr3R	7850230	intron	CG34384 +	chr3R	7850839	intron	CG34384 +	chr3R_9_7850001	chr3R_7850001	RAL-832
1364	chr3R	7973301	7973338	chr3R	7974383	7974417	1360	10	1081	2.5	4.5	3.5	2.2	1116	chr3R	7973301	intergenic	not near genes	chr3R	7973859	intergenic	not near genes	chr3R	7974417	3` UTR	CD98hc -	chr3R_10_7970001	chr3R_7970001	RAL-832
1367	chr3R	8101767	8101789	chr3R	8104849	8104871	G2	4	3090	1.0	3.0	2.0	1.3	3104	chr3R	8101767	exon	CG7900 +	chr3R	8103319	intron	CG7900 +	chr3R	8104871	3` UTR	CG7900 +	chr3R_4_8100001	chr3R_8100001	RAL-832
1372	chr3R	8403015	8403039	chr3R	8412181	8412189	roo	6	9170	0.5	3.5	2.0	2.0	9174	chr3R	8403015	intron	CG45263 -	chr3R	8407602	intron	CG45263 -	chr3R	8412189	intron	CG45263 -	chr3R_6_8405001	chr3R_8405001	RAL-832
1373	chr3R	8570481	8570503	chr3R	8575112	8575114	HMS-Beagle	9	4630	3.5	3.5	3.5	2.0	4633	chr3R	8570481	intergenic	not near genes	chr3R	8572798	intergenic	not near genes	chr3R	8575114	intergenic	not near genes	chr3R_9_8570001	chr3R_8570001	RAL-832
1374	chr3R	8707364	8707380	chr3R	8709794	8709840	jockey	8	2452	1.0	1.5	1.2	3.6	2476	chr3R	8707364	intergenic	not near genes	chr3R	8708602	intergenic	not near genes	chr3R	8709840	intergenic	not near genes	chr3R_8_8705001	chr3R_8705001	RAL-832
1378	chr3R	8894852	8894889	chr3R	8896028	8896055	1360	10	1172	6.0	4.0	5.0	1.7	1203	chr3R	8894852	intron	pyd -	chr3R	8895454	intron	pyd -	chr3R	8896055	intron	pyd -	chr3R_10_8895001	chr3R_8895001	RAL-832
1390	chr3R	9319561	9319608	chr3R	9320015	9320043	jockey	9	449	4.0	3.0	3.5	2.0	482	chr3R	9319561	intron	CG8861 -	chr3R	9319802	intron	CG8861 -	chr3R	9320043	intron	CG8861 -	chr3R_9_9315001	chr3R_9315001	RAL-832
1391	chr3R	9361804	9361840	chr3R	9362065	9362101	pogo	14	259	3.0	7.0	5.0	2.3	297	chr3R	9361804	3` UTR	CG45050 +	chr3R	9361952	3` UTR	CG45050 +	chr3R	9362101	3` UTR	CG45050 +	chr3R_14_9360001	chr3R_9360001	RAL-832
1398	chr3R	10231762	10231799	chr3R	10237359	10237361	mdg3	9	5589	5.0	3.5	4.2	1.7	5599	chr3R	10231762	intron	CG42795 +	chr3R	10234562	intron	CG42795 +	chr3R	10237361	intron	CG42795 +	chr3R_9_10230001	chr3R_10230001	RAL-832
1399	chr3R	10255361	10255381	chr3R	10260821	10260833	I-element	7	5459	13.0	3.5	8.2	0.8	5472	chr3R	10255361	3` UTR	Sirt6 -	chr3R	10258097	intron	Sirt6 -	chr3R	10260833	exon	Sirt6 -	chr3R_7_10255001	chr3R_10255001	RAL-832
1407	chr3R	10804154	10804201	chr3R	10811706	10811753	17.6	5	7552	5.0	3.5	4.2	1.0	7599	chr3R	10804154	intergenic	CG14692 -	chr3R	10807954	intergenic	not near genes	chr3R	10811753	3` UTR	CG14693 -	chr3R_5_10805001	chr3R_10805001	RAL-832
1421	chr3R	11379219	11379263	chr3R	11388394	11388427	roo	5	9167	6.0	3.5	4.8	0.9	9208	chr3R	11379219	intron	pros +	chr3R	11383823	intron	pros +	chr3R	11388427	intron	pros +	chr3R_5_11380001	chr3R_11380001	RAL-832
1425	chr3R	12022868	12022910	chr3R	12025065	12025107	pogo	6	2192	2.5	4.5	3.5	1.3	2239	chr3R	12022868	intergenic	not near genes	chr3R	12023988	intergenic	not near genes	chr3R	12025107	intergenic	not near genes	chr3R_6_12020001	chr3R_12020001	RAL-832
1439	chr3R	12864562	12864590	chr3R	12865067	12865095	roo	6	505	2.5	4.0	3.2	1.4	533	chr3R	12864562	intergenic	not near genes	chr3R	12864828	intergenic	not near genes	chr3R	12865095	intergenic	not near genes	chr3R_6_12860001	chr3R_12860001	RAL-832
1446	chr3R	13135819	13135841	chr3R	13138004	13138015	pogo	6	2181	2.0	3.0	2.5	1.7	2196	chr3R	13135819	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136917	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138015	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_6_13135001	chr3R_13135001	RAL-832
1448	chr3R	13314108	13314124	chr3R	13318885	13318926	Doc	8	4797	4.0	4.0	4.0	1.6	4818	chr3R	13314108	intergenic	not near genes	chr3R	13316517	intergenic	not near genes	chr3R	13318926	intergenic	CG45080 -	chr3R_8_13315001	chr3R_13315001	RAL-832
1454	chr3R	13517209	13517243	chr3R	13520046	13520070	jockey	11	2831	4.0	4.5	4.2	2.1	2861	chr3R	13517209	intergenic	not near genes	chr3R	13518640	intergenic	not near genes	chr3R	13520070	intergenic	not near genes	chr3R_11_13515001	chr3R_13515001	RAL-832
1467	chr3R	14021634	14021661	chr3R	14023466	14023506	S-element	8	1839	3.0	6.5	4.8	1.4	1872	chr3R	14021634	intron	rdx -	chr3R	14022570	intron	rdx -	chr3R	14023506	intron	rdx -	chr3R_8_14020001	chr3R_14020001	RAL-832
1472	chr3R	14180791	14180834	chr3R	14185576	14185619	F-element	16	4776	4.0	6.5	5.2	2.6	4828	chr3R	14180791	intron	Dop1R1 -	chr3R	14183205	intron	Dop1R1 -	chr3R	14185619	intron	Dop1R1 -	chr3R_16_14180001	chr3R_14180001	RAL-832
1487	chr3R	15041408	15041413	chr3R	15045187	15045217	Doc	4	3795	0.0	2.5	1.2	1.8	3809	chr3R	15041408	intergenic	not near genes	chr3R	15043312	intergenic	not near genes	chr3R	15045217	intergenic	not near genes	chr3R_4_15040001	chr3R_15040001	RAL-832
1489	chr3R	15079787	15079825	chr3R	15080048	15080075	pogo	11	252	9.0	0.0	4.5	2.0	288	chr3R	15079787	3` UTR	CG6966 -	chr3R	15079931	3` UTR	CG6966 -	chr3R	15080075	3` UTR	CG6966 -	chr3R_11_15075001	chr3R_15075001	RAL-832
1490	chr3R	15102493	15102528	chr3R	15109769	15109802	412	6	7274	4.0	3.0	3.5	1.3	7309	chr3R	15102493	intron	CG42788 -	chr3R	15106148	intron	CG42788 -	chr3R	15109802	intron	CG42788 -	chr3R_6_15105001	chr3R_15105001	RAL-832
1492	chr3R	15132061	15132083	chr3R	15135115	15135148	Juan	6	3070	5.0	6.5	5.8	0.9	3087	chr3R	15132061	intergenic	CG42788 -	chr3R	15133604	intergenic	not near genes	chr3R	15135148	3` UTR	CG6912 -	chr3R_6_15130001	chr3R_15130001	RAL-832
1498	chr3R	15601184	15601195	chr3R	15608692	15608736	412	7	7521	3.5	7.0	5.2	1.1	7552	chr3R	15601184	intergenic	not near genes	chr3R	15604960	intergenic	not near genes	chr3R	15608736	intergenic	not near genes	chr3R_7_15600001	chr3R_15600001	RAL-832
1512	chr3R	17294652	17294702	chr3R	17295100	17295128	BS	12	440	0.5	3.5	2.0	4.0	476	chr3R	17294652	intergenic	not near genes	chr3R	17294890	intergenic	not near genes	chr3R	17295128	intergenic	not near genes	chr3R_12_17290001	chr3R_17290001	RAL-832
1513	chr3R	17346688	17346716	chr3R	17348254	17348288	F-element	10	1578	3.5	7.0	5.2	1.6	1600	chr3R	17346688	intron	beat-IIa -	chr3R	17347488	intron	beat-IIa -	chr3R	17348288	intron	beat-IIa -	chr3R_10_17345001	chr3R_17345001	RAL-832
1521	chr3R	17638304	17638348	chr3R	17638810	17638854	roo	10	506	3.5	8.5	6.0	1.4	550	chr3R	17638304	intron	CG43175 +	chr3R	17638579	intron	CG43175 +	chr3R	17638854	intron,intron	CG43175 +,CR45222 +	chr3R_10_17635001	chr3R_17635001	RAL-832
1530	chr3R	18061577	18061611	chr3R	18063154	18063194	F-element	18	1585	5.0	4.5	4.8	3.1	1617	chr3R	18061577	intergenic	not near genes	chr3R	18062386	intergenic	not near genes	chr3R	18063194	intergenic	not near genes	chr3R_18_18060001	chr3R_18060001	RAL-832
1534	chr3R	18606514	18606534	chr3R	18610736	18610769	F-element	8	4241	3.5	5.5	4.5	1.5	4255	chr3R	18606514	intron,intron	qin +,CG14304 -	chr3R	18608642	intron,intron	qin +,CG14304 -	chr3R	18610769	intron,intron	qin +,CG14304 -	chr3R_8_18605001	chr3R_18605001	RAL-832
1557	chr3R	20109523	20109563	chr3R	20114748	20114789	copia	10	5219	4.5	2.0	3.2	2.4	5266	chr3R	20109523	intergenic	not near genes	chr3R	20112156	intergenic	not near genes	chr3R	20114789	intergenic	CG10887 +	chr3R_10_20110001	chr3R_20110001	RAL-832
1559	chr3R	20156697	20156709	chr3R	20165884	20165887	roo	4	9186	5.0	7.5	6.2	0.6	9190	chr3R	20156697	intergenic	not near genes	chr3R	20161292	intergenic	not near genes	chr3R	20165887	intergenic	not near genes	chr3R_4_20160001	chr3R_20160001	RAL-832
1563	chr3R	20245265	20245303	chr3R	20248895	20248933	F-element	11	3626	3.5	1.5	2.5	3.1	3668	chr3R	20245265	3` UTR	Nlg4 +	chr3R	20247099	intergenic	not near genes	chr3R	20248933	intergenic	not near genes	chr3R_11_20245001	chr3R_20245001	RAL-832
1564	chr3R	20266502	20266544	chr3R	20272986	20273025	Burdock	14	6486	0.0	4.0	2.0	4.7	6523	chr3R	20266502	intron	cic +	chr3R	20269764	intron	cic +	chr3R	20273025	intron	cic +	chr3R_14_20265001	chr3R_20265001	RAL-832
1567	chr3R	20330980	20331000	chr3R	20331486	20331495	roo	8	505	9.0	3.5	6.2	1.1	515	chr3R	20330980	intergenic	Sirt2 +	chr3R	20331238	intergenic	Sirt2 +	chr3R	20331495	intergenic	not near genes	chr3R_8_20330001	chr3R_20330001	RAL-832
1568	chr3R	20331001	20331028	chr3R	20331482	20331524	roo	18	496	6.0	3.5	4.8	3.1	523	chr3R	20331001	intergenic	Sirt2 +	chr3R	20331262	intergenic	Sirt2 +	chr3R	20331524	intergenic	not near genes	chr3R_18_20330001	chr3R_20330001	RAL-832
1571	chr3R	20506582	20506610	chr3R	20507405	20507433	BS	7	815	5.0	7.0	6.0	1.0	851	chr3R	20506582	intergenic	Or92a +	chr3R	20507008	intergenic	CG4288 -	chr3R	20507433	3` UTR	CG4288 -	chr3R_7_20505001	chr3R_20505001	RAL-832
1572	chr3R	20513000	20513032	chr3R	20515709	20515755	opus	5	2718	3.0	0.0	1.5	2.0	2755	chr3R	20513000	intergenic	not near genes	chr3R	20514378	intergenic	not near genes	chr3R	20515755	intergenic	not near genes	chr3R_5_20510001	chr3R_20510001	RAL-832
1608	chr3R	22234697	22234715	chr3R	22236011	22236045	pogo	8	1328	1.5	6.0	3.8	1.7	1348	chr3R	22234697	intron	SKIP +	chr3R	22235371	intron	SKIP +	chr3R	22236045	intron	SKIP +	chr3R_8_22235001	chr3R_22235001	RAL-832
1609	chr3R	22239480	22239495	chr3R	22248555	22248559	roo	5	9073	7.5	0.0	3.8	1.0	9079	chr3R	22239480	intron	SKIP +	chr3R	22244020	intron	SKIP +	chr3R	22248559	intron	SKIP +	chr3R_5_22240001	chr3R_22240001	RAL-832
1615	chr3R	22450540	22450575	chr3R	22453191	22453235	NOF	6	2648	2.5	6.5	4.5	1.1	2695	chr3R	22450540	intron	CG34376 +	chr3R	22451888	intron	CG34376 +	chr3R	22453235	intron	CG34376 +	chr3R_6_22450001	chr3R_22450001	RAL-832
1629	chr3R	23558385	23558429	chr3R	23560186	23560212	Bari1	7	1787	2.0	2.5	2.2	2.2	1827	chr3R	23558385	intron	beat-IV +	chr3R	23559298	intron	beat-IV +	chr3R	23560212	intron	beat-IV +	chr3R_7_23555001	chr3R_23555001	RAL-832
1632	chr3R	23851068	23851089	chr3R	23858754	23858776	opus	10	7686	4.0	12.5	8.2	1.1	7708	chr3R	23851068	3` UTR	CG34355 +	chr3R	23854922	intergenic	not near genes	chr3R	23858776	intergenic	not near genes	chr3R_10_23850001	chr3R_23850001	RAL-832
1638	chr3R	24076927	24076947	chr3R	24078380	24078419	hobo	7	1472	1.0	1.0	1.0	3.5	1492	chr3R	24076927	intron	4EHP -	chr3R	24077673	intron	4EHP -	chr3R	24078419	intron	4EHP -	chr3R_7_24075001	chr3R_24075001	RAL-832
1639	chr3R	24207202	24207246	chr3R	24212298	24212336	flea	4	5091	2.0	6.5	4.2	0.8	5134	chr3R	24207202	intron	twin -	chr3R	24209769	intron	twin -	chr3R	24212336	intron	twin -	chr3R_4_24205001	chr3R_24205001	RAL-832
1641	chr3R	24493267	24493310	chr3R	24493517	24493550	BS	8	243	3.5	2.5	3.0	2.0	283	chr3R	24493267	intergenic	not near genes	chr3R	24493408	intergenic	not near genes	chr3R	24493550	intergenic	not near genes	chr3R_8_24490001	chr3R_24490001	RAL-832
1650	chr3R	24927120	24927160	chr3R	24931916	24931941	Doc	11	4801	3.0	1.5	2.2	3.4	4821	chr3R	24927120	intergenic	Trf4-2 +	chr3R	24929530	intergenic	not near genes	chr3R	24931941	intergenic	CG11771 +	chr3R_11_24925001	chr3R_24925001	RAL-832
1665	chr3R	25725811	25725862	chr3R	25734991	25735022	roo	8	9178	2.5	7.0	4.8	1.4	9211	chr3R	25725811	intron	LpR2 -	chr3R	25730416	intron	LpR2 -	chr3R	25735022	intron	LpR2 -	chr3R_8_25730001	chr3R_25730001	RAL-832
1679	chr3R	26642736	26642754	chr3R	26643124	26643142	jockey	7	405	4.5	3.5	4.0	1.4	406	chr3R	26642736	intergenic	not near genes	chr3R	26642939	intergenic	not near genes	chr3R	26643142	intergenic	not near genes	chr3R_7_26640001	chr3R_26640001	RAL-832
1680	chr3R	26810538	26810578	chr3R	26811043	26811083	roo	9	501	6.0	3.5	4.8	1.6	545	chr3R	26810538	intron	Tl +	chr3R	26810810	intron	Tl +	chr3R	26811083	intron	Tl +	chr3R_9_26810001	chr3R_26810001	RAL-832
1682	chr3R	27007397	27007434	chr3R	27016541	27016586	roo	11	9144	2.5	3.5	3.0	2.8	9189	chr3R	27007397	intron	RYa-R +	chr3R	27011992	intron	RYa-R +	chr3R	27016586	intron	RYa-R +	chr3R_11_27010001	chr3R_27010001	RAL-832
1685	chr3R	27140501	27140545	chr3R	27148131	27148142	412	6	7614	2.5	4.5	3.5	1.3	7641	chr3R	27140501	intron	CG6051 -	chr3R	27144322	intron	CG6051 -	chr3R	27148142	intron	CG6051 -	chr3R_6_27140001	chr3R_27140001	RAL-832
1688	chr3R	27342780	27342826	chr3R	27351374	27351391	Tirant	7	8592	1.0	1.5	1.2	3.2	8611	chr3R	27342780	intron	CG42534 +	chr3R	27347086	intron	CG42534 +	chr3R	27351391	intron	CG42534 +	chr3R_7_27345001	chr3R_27345001	RAL-832
1693	chr3R	27521141	27521159	chr3R	27530370	27530388	roo	8	9228	5.5	6.0	5.8	1.2	9247	chr3R	27521141	intron	CG12885 +	chr3R	27525764	intron	CG12885 +	chr3R	27530388	intron	CG12885 +	chr3R_8_27525001	chr3R_27525001	RAL-832
1694	chr3R	27521162	27521191	chr3R	27530366	27530404	roo	18	9224	0.5	5.0	2.8	4.7	9242	chr3R	27521162	intron	CG12885 +	chr3R	27525783	intron	CG12885 +	chr3R	27530404	intron	CG12885 +	chr3R_18_27525001	chr3R_27525001	RAL-832
1696	chr3R	27725549	27725600	chr3R	27731011	27731014	I-element	9	5454	3.0	1.0	2.0	3.0	5465	chr3R	27725549	intergenic	not near genes	chr3R	27728282	intergenic	not near genes	chr3R	27731014	intergenic	not near genes	chr3R_9_27725001	chr3R_27725001	RAL-832
1699	chr3R	27856762	27856788	chr3R	27858263	27858281	hopper2	4	1500	3.5	2.5	3.0	1.0	1519	chr3R	27856762	intron	CG34353 -	chr3R	27857522	intron	CG34353 -	chr3R	27858281	intron	CG34353 -	chr3R_4_27855001	chr3R_27855001	RAL-832
1700	chr3R	27862962	27862984	chr3R	27868265	27868309	Transpac	5	5316	3.5	1.5	2.5	1.4	5347	chr3R	27862962	intron	CG34353 -	chr3R	27865636	intron	CG34353 -	chr3R	27868309	intron	CG34353 -	chr3R_5_27865001	chr3R_27865001	RAL-832
1701	chr3R	27875698	27875729	chr3R	27882758	27882759	297	14	7064	3.0	6.0	4.5	2.5	7061	chr3R	27875698	intron	CG34353 -	chr3R	27879228	intron	CG34353 -	chr3R	27882759	intron	CG34353 -	chr3R_14_27875001	chr3R_27875001	RAL-832
1704	chr3R	28068486	28068514	chr3R	28073937	28073946	I-element	4	5449	1.5	0.5	1.0	2.0	5460	chr3R	28068486	intron	CG34362 +	chr3R	28071216	intron	CG34362 +	chr3R	28073946	intron	CG34362 +	chr3R_4_28070001	chr3R_28070001	RAL-832
1705	chr3R	28173654	28173701	chr3R	28181104	28181151	mdg1	12	7445	2.5	6.0	4.2	2.3	7497	chr3R	28173654	intron	CG34354 +	chr3R	28177402	intron	CG34354 +	chr3R	28181151	intron	CG34354 +	chr3R_12_28175001	chr3R_28175001	RAL-832
1706	chr3R	28253338	28253371	chr3R	28255854	28255880	jockey	8	2512	3.0	4.0	3.5	1.8	2542	chr3R	28253338	intergenic	not near genes	chr3R	28254609	intergenic	not near genes	chr3R	28255880	intergenic	not near genes	chr3R_8_28250001	chr3R_28250001	RAL-832
1707	chr3R	28302090	28302135	chr3R	28302545	28302577	jockey	13	454	4.0	9.0	6.5	1.7	487	chr3R	28302090	intergenic	not near genes	chr3R	28302334	intergenic	not near genes	chr3R	28302577	intergenic	not near genes	chr3R_13_28300001	chr3R_28300001	RAL-832
1716	chr3R	28763902	28763905	chr3R	28771365	28771368	Stalker4	4	7463	0.0	6.5	3.2	1.0	7466	chr3R	28763902	intergenic	not near genes	chr3R	28767635	intergenic	not near genes	chr3R	28771368	intergenic	not near genes	chr3R_4_28765001	chr3R_28765001	RAL-832
1722	chr3R	29079368	29079410	chr3R	29080760	29080784	NOF	16	1391	3.5	3.5	3.5	3.6	1416	chr3R	29079368	intron	CG11873 +	chr3R	29080076	intron	CG11873 +	chr3R	29080784	intron	CG11873 +	chr3R_16_29080001	chr3R_29080001	RAL-832
1729	chr3R	29406618	29406642	chr3R	29407898	29407900	jockey	5	1288	1.5	2.0	1.8	1.8	1282	chr3R	29406618	intron	Ptp99A +	chr3R	29407259	intron	Ptp99A +	chr3R	29407900	intron	Ptp99A +	chr3R_5_29405001	chr3R_29405001	RAL-832
1733	chr3R	29738272	29738280	chr3R	29739732	29739755	hobo	6	1473	3.5	3.5	3.5	1.3	1483	chr3R	29738272	intergenic	CG1969 +,CG7598 +	chr3R	29739014	intron	CG1969 +	chr3R	29739755	5` UTR	CG1969 +	chr3R_6_29735001	chr3R_29735001	RAL-832
1735	chr3R	29760356	29760392	chr3R	29761567	29761613	pogo	7	1216	3.0	4.0	3.5	1.6	1257	chr3R	29760356	intergenic	not near genes	chr3R	29760984	intergenic	not near genes	chr3R	29761613	intergenic	not near genes	chr3R_7_29760001	chr3R_29760001	RAL-832
1739	chr3R	29882002	29882013	chr3R	29891179	29891190	roo	4	9176	8.5	5.0	6.8	0.5	9188	chr3R	29882002	intron	CG31038 +	chr3R	29886596	intron	CG31038 +	chr3R	29891190	intron	CG31038 +	chr3R_4_29885001	chr3R_29885001	RAL-832
1740	chr3R	29882016	29882053	chr3R	29891176	29891222	roo	13	9168	4.5	4.5	4.5	2.4	9206	chr3R	29882016	intron	CG31038 +	chr3R	29886619	intron	CG31038 +	chr3R	29891222	intron	CG31038 +	chr3R_13_29885001	chr3R_29885001	RAL-832
1744	chr3R	30084865	30084883	chr3R	30086316	30086335	hobo	4	1464	0.0	2.0	1.0	2.0	1470	chr3R	30084865	intron	sima +	chr3R	30085600	intron	sima +	chr3R	30086335	intron	sima +	chr3R_4_30085001	chr3R_30085001	RAL-832
1746	chr3R	30238741	30238793	chr3R	30239925	30239976	1360	15	1179	5.0	4.0	4.5	2.7	1235	chr3R	30238741	intergenic	not near genes	chr3R	30239358	intergenic	not near genes	chr3R	30239976	intergenic	not near genes	chr3R_15_30235001	chr3R_30235001	RAL-832
1747	chr3R	30375533	30375568	chr3R	30383171	30383211	412	5	7639	3.5	1.0	2.2	1.6	7678	chr3R	30375533	intergenic	not near genes	chr3R	30379372	intergenic	not near genes	chr3R	30383211	intergenic	not near genes	chr3R_5_30375001	chr3R_30375001	RAL-832
1748	chr3R	30396198	30396247	chr3R	30404484	30404533	roo	14	8283	2.5	2.5	2.5	4.0	8335	chr3R	30396198	intergenic	not near genes	chr3R	30400366	intergenic	not near genes	chr3R	30404533	5` UTR	CR45570 +	chr3R_14_30400001	chr3R_30400001	RAL-832
1757	chr3R	30679497	30679551	chr3R	30686986	30687017	blood	11	7483	2.5	2.5	2.5	3.1	7520	chr3R	30679497	intergenic	not near genes	chr3R	30683257	intergenic	not near genes	chr3R	30687017	intergenic	not near genes	chr3R_11_30680001	chr3R_30680001	RAL-832
1767	chr3R	31691522	31691561	chr3R	31696301	31696327	Doc	10	4778	1.0	2.5	1.8	3.6	4805	chr3R	31691522	intergenic	not near genes	chr3R	31693924	intergenic	not near genes	chr3R	31696327	intergenic	not near genes	chr3R_10_31690001	chr3R_31690001	RAL-832
1774	chr3R	31997998	31998017	chr3R	32005461	32005491	blood	9	7480	3.5	3.5	3.5	2.0	7493	chr3R	31997998	intron	heph -	chr3R	32001744	intron	heph -	chr3R	32005491	intron	heph -	chr3R_9_32000001	chr3R_32000001	RAL-832
1775	chr4	319970	320017	chr4	328166	328213	Stalker2	12	8193	4.5	5.5	5.0	2.0	8243	chr4	319970	3` UTR	CG32850 +	chr4	324092	intron	CG32850 +	chr4	328213	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_12_320001	chr4_320001	RAL-832
1778	chrX	292425	292447	chrX	293064	293112	G3	10	649	2.5	24.5	13.5	0.7	687	chrX	292425	intron,intron	CG3777 +,CG13375 -	chrX	292768	intron,intron	CG3777 +,CG13375 -	chrX	293112	intron,intron	CG3777 +,CG13375 -	chrX_10_290001	chrX_290001	RAL-832
1779	chrX	318471	318500	chrX	323560	323581	flea	10	5095	4.5	3.5	4.0	2.0	5110	chrX	318471	intron,intron	CG3777 +,CG32816 -	chrX	321026	intron,intron	CG3777 +,CG32816 -	chrX	323581	intron,intron	CG3777 +,CG32816 -	chrX_10_320001	chrX_320001	RAL-832
1780	chrX	428427	428452	chrX	434603	434642	3S18	6	6194	4.0	5.0	4.5	1.1	6215	chrX	428427	intron	CG32816 -	chrX	431534	intron	CG32816 -	chrX	434642	intron	CG32816 -	chrX_6_430001	chrX_430001	RAL-832
1785	chrX	812273	812299	chrX	817899	817948	297	6	5639	3.0	6.0	4.5	1.1	5675	chrX	812273	intron	CG43867 -	chrX	815110	intron	CG43867 -	chrX	817948	intron	CG43867 -	chrX_6_815001	chrX_815001	RAL-832
1786	chrX	827611	827633	chrX	835393	835445	roo	6	7798	3.0	3.5	3.2	1.4	7834	chrX	827611	intron	CG43867 -	chrX	831528	intron	CG43867 -	chrX	835445	intron	CG43867 -	chrX_6_830001	chrX_830001	RAL-832
1787	chrX	1357768	1357807	chrX	1367948	1367994	Doc	7	10177	1.0	2.0	1.5	2.8	10226	chrX	1357768	intergenic	png -	chrX	1362881	intergenic	not near genes	chrX	1367994	intergenic	not near genes	chrX_7_1360001	chrX_1360001	RAL-832
1789	chrX	1518038	1518060	chrX	1523435	1523462	jockey	4	5398	2.5	1.5	2.0	1.3	5424	chrX	1518038	intergenic	inc +	chrX	1520750	intergenic	not near genes	chrX	1523462	intergenic	not near genes	chrX_4_1520001	chrX_1520001	RAL-832
1790	chrX	1930515	1930553	chrX	1938106	1938144	opus	7	7584	4.5	2.0	3.2	1.7	7629	chrX	1930515	3` UTR	CG11596 +	chrX	1934330	intergenic	not near genes	chrX	1938144	3` UTR	CG3857 -	chrX_7_1930001	chrX_1930001	RAL-832
1795	chrX	2844900	2844930	chrX	2852330	2852355	mdg1	8	7427	4.0	4.5	4.2	1.5	7455	chrX	2844900	intron	kirre +	chrX	2848628	intron	kirre +	chrX	2852355	intron	kirre +	chrX_8_2845001	chrX_2845001	RAL-832
1802	chrX	3493074	3493124	chrX	3502253	3502292	roo	5	9169	1.5	0.5	1.0	2.5	9218	chrX	3493074	intron,intron	CR44999 +,Gas8 -	chrX	3497683	intron,intron	CR44999 +,Gas8 -	chrX	3502292	intron,intron	CR44999 +,Gas8 -	chrX_5_3495001	chrX_3495001	RAL-832
1805	chrX	3597553	3597570	chrX	3619725	3619747	roo	5	22177	3.0	1.0	2.0	1.7	22194	chrX	3597553	intron	AstA-R1 +	chrX	3608650	intron	AstA-R1 +	chrX	3619747	intron	AstA-R1 +	chrX_5_3605001	chrX_3605001	RAL-832
1812	chrX	3986859	3986894	chrX	3994502	3994531	412	6	7635	1.0	1.5	1.2	2.7	7672	chrX	3986859	intergenic	not near genes	chrX	3990695	intergenic	not near genes	chrX	3994531	intergenic	not near genes	chrX_6_3990001	chrX_3990001	RAL-832
1815	chrX	4157877	4157922	chrX	4164950	4164985	297	5	7063	1.5	1.0	1.2	2.3	7108	chrX	4157877	intron	Fas2 -	chrX	4161431	intron	Fas2 -	chrX	4164985	intron	Fas2 -	chrX_5_4160001	chrX_4160001	RAL-832
1821	chrX	4700379	4700426	chrX	4700740	4700774	jockey	4	359	2.0	2.5	2.2	1.2	395	chrX	4700379	3` UTR	ctp +	chrX	4700576	3` UTR	ctp +	chrX	4700774	3` UTR	ctp +	chrX_4_4700001	chrX_4700001	RAL-832
1823	chrX	4763242	4763267	chrX	4763750	4763754	Stalker4	4	502	3.0	6.0	4.5	0.7	512	chrX	4763242	intergenic	not near genes	chrX	4763498	intergenic	not near genes	chrX	4763754	intergenic	not near genes	chrX_4_4760001	chrX_4760001	RAL-832
1824	chrX	4763269	4763283	chrX	4763742	4763771	Stalker4	4	491	2.0	5.0	3.5	0.9	502	chrX	4763269	intergenic	not near genes	chrX	4763520	intergenic	not near genes	chrX	4763771	intergenic	not near genes	chrX_4_4760001	chrX_4760001	RAL-832
1825	chrX	4792374	4792410	chrX	4792816	4792833	jockey	6	444	1.5	2.5	2.0	2.0	459	chrX	4792374	intergenic	not near genes	chrX	4792604	intergenic	not near genes	chrX	4792833	intergenic	not near genes	chrX_6_4790001	chrX_4790001	RAL-832
1832	chrX	5524822	5524842	chrX	5528705	5528725	412	7	3881	6.5	3.5	5.0	1.2	3903	chrX	5524822	intergenic	snoRNA:Psi28S-3342 -	chrX	5526774	intergenic	not near genes	chrX	5528725	intergenic	Vsx2 -	chrX_7_5525001	chrX_5525001	RAL-832
1835	chrX	5883828	5883840	chrX	5884069	5884096	pogo	4	254	1.0	3.5	2.2	1.2	268	chrX	5883828	intron	CR45668 -	chrX	5883962	intron	CR45668 -	chrX	5884096	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-832
1838	chrX	6171590	6171612	chrX	6179016	6179065	Quasimodo	9	7441	1.5	1.5	1.5	3.6	7475	chrX	6171590	intron	Ca-alpha1T -	chrX	6175328	intron	Ca-alpha1T -	chrX	6179065	intron	Ca-alpha1T -	chrX_9_6175001	chrX_6175001	RAL-832
1843	chrX	6392884	6392903	chrX	6397628	6397668	Doc	4	4762	1.0	2.0	1.5	1.6	4784	chrX	6392884	intergenic	not near genes	chrX	6395276	intergenic	not near genes	chrX	6397668	intergenic	not near genes	chrX_4_6395001	chrX_6395001	RAL-832
1848	chrX	7023589	7023621	chrX	7030990	7031030	Tabor	6	7400	5.0	1.5	3.2	1.4	7441	chrX	7023589	intron	CG12541 -	chrX	7027310	intron	CG12541 -	chrX	7031030	intron	CG12541 -	chrX_6_7025001	chrX_7025001	RAL-832
1851	chrX	7845724	7845753	chrX	7847217	7847263	hopper2	6	1505	3.0	3.5	3.2	1.4	1539	chrX	7845724	intergenic	not near genes	chrX	7846494	intergenic	not near genes	chrX	7847263	intergenic	not near genes	chrX_6_7845001	chrX_7845001	RAL-832
1853	chrX	8031415	8031441	chrX	8035744	8035770	Juan	9	4328	4.0	4.0	4.0	1.8	4355	chrX	8031415	intergenic	not near genes	chrX	8033592	intergenic	not near genes	chrX	8035770	3` UTR	CG2233 -	chrX_9_8030001	chrX_8030001	RAL-832
1862	chrX	8922331	8922352	chrX	8922761	8922761	jockey	4	424	3.5	3.0	3.2	1.0	430	chrX	8922331	intron	rdgA +	chrX	8922546	intron	rdgA +	chrX	8922761	intron	rdgA +	chrX_4_8920001	chrX_8920001	RAL-832
1863	chrX	8927579	8927608	chrX	8929852	8929893	NOF	7	2283	5.5	2.0	3.8	1.5	2314	chrX	8927579	intron	rdgA +	chrX	8928736	intron	rdgA +	chrX	8929893	intron	rdgA +	chrX_7_8925001	chrX_8925001	RAL-832
1864	chrX	8948753	8948760	chrX	8956272	8956289	roo	5	7522	7.5	3.5	5.5	0.8	7536	chrX	8948753	intron	rdgA +	chrX	8952521	intron	rdgA +	chrX	8956289	intron	rdgA +	chrX_5_8950001	chrX_8950001	RAL-832
1865	chrX	8948761	8948787	chrX	8956266	8956312	roo	5	7524	3.5	3.5	3.5	1.1	7551	chrX	8948761	intron	rdgA +	chrX	8952536	intron	rdgA +	chrX	8956312	intron	rdgA +	chrX_5_8950001	chrX_8950001	RAL-832
1869	chrX	9508127	9508155	chrX	9509658	9509693	jockey	5	1535	7.5	2.0	4.8	0.9	1566	chrX	9508127	intron	CG32700 -	chrX	9508910	intron	CG32700 -	chrX	9509693	intron	CG32700 -	chrX_5_9505001	chrX_9505001	RAL-832
1870	chrX	10138211	10138238	chrX	10145723	10145762	412	7	7520	4.5	4.0	4.2	1.3	7551	chrX	10138211	intron,intron	RhoU +,CR44894 -	chrX	10141986	intron,intron	RhoU +,CR44894 -	chrX	10145762	intron,intron	RhoU +,CR44894 -	chrX_7_10140001	chrX_10140001	RAL-832
1871	chrX	10267306	10267333	chrX	10276456	10276493	roo	12	9164	1.5	5.0	3.2	2.9	9187	chrX	10267306	3` UTR	alpha-Man-I -	chrX	10271900	intron	alpha-Man-I -	chrX	10276493	3` UTR	alpha-Man-I -	chrX_12_10270001	chrX_10270001	RAL-832
1873	chrX	10348779	10348830	chrX	10356364	10356367	springer	10	7569	4.0	2.0	3.0	2.5	7588	chrX	10348779	intergenic	snoRNA:U3:9B +	chrX	10352573	intergenic	not near genes	chrX	10356367	intergenic	l(1)G0289 -	chrX_10_10350001	chrX_10350001	RAL-832
1878	chrX	10686043	10686081	chrX	10691186	10691227	roo	10	5149	5.5	0.5	3.0	2.5	5184	chrX	10686043	intron	X11Lbeta +	chrX	10688635	intron	X11Lbeta +	chrX	10691227	intron	X11Lbeta +	chrX_10_10685001	chrX_10685001	RAL-832
1883	chrX	11095988	11096014	chrX	11103099	11103136	HMS-Beagle	5	7110	7.5	4.5	6.0	0.7	7148	chrX	11095988	intergenic	not near genes	chrX	11099562	intergenic	not near genes	chrX	11103136	intron	CG42249 +	chrX_5_11095001	chrX_11095001	RAL-832
1886	chrX	11633396	11633437	chrX	11640470	11640511	297	10	7074	2.0	3.5	2.8	2.6	7115	chrX	11633396	intron	Ptp10D +	chrX	11636954	intron	Ptp10D +	chrX	11640511	intron	Ptp10D +	chrX_10_11635001	chrX_11635001	RAL-832
1892	chrX	12381843	12381902	chrX	12385776	12385790	flea	11	3920	0.0	2.5	1.2	5.0	3947	chrX	12381843	intergenic	not near genes	chrX	12383816	intergenic	not near genes	chrX	12385790	intergenic	not near genes	chrX_11_12380001	chrX_12380001	RAL-832
1897	chrX	9845361	9845361	chrX	12546496	12546496	gypsy5	6	2701135	5.0	17.0	11.0	0.5	2701135	chrX	9845361	intron	CG32698 +	chrX	11195928	intergenic	not near genes	chrX	12546496	intron	CG43921 -	chrX_6_11195001	chrX_11195001	RAL-832
1902	chrX	12930578	12930607	chrX	12937714	12937728	HMS-Beagle	7	7132	3.0	5.0	4.0	1.4	7150	chrX	12930578	intron	fne +	chrX	12934153	intron	fne +	chrX	12937728	intron	fne +	chrX_7_12930001	chrX_12930001	RAL-832
1904	chrX	13401469	13401521	chrX	13401841	13401893	jockey	9	371	1.0	3.0	2.0	3.0	424	chrX	13401469	intergenic	CG1673 +,CG12725 -	chrX	13401681	intergenic	CG12725 -,CG1673 +	chrX	13401893	3` UTR	CG12725 -	chrX_9_13400001	chrX_13400001	RAL-832
1905	chrX	13429478	13429493	chrX	13430612	13430615	jockey	5	1150	0.0	3.0	1.5	2.0	1137	chrX	13429478	intergenic	not near genes	chrX	13430046	intergenic	not near genes	chrX	13430615	intergenic	not near genes	chrX_5_13430001	chrX_13430001	RAL-832
1908	chrX	13463634	13463677	chrX	13469230	13469249	mdg3	12	5588	3.5	5.5	4.5	2.2	5615	chrX	13463634	intron	Neto +	chrX	13466442	intron	Neto +	chrX	13469249	intron	Neto +	chrX_12_13465001	chrX_13465001	RAL-832
1911	chrX	13937994	13938008	chrX	13941270	13941299	I-element	5	3287	1.0	1.0	1.0	2.5	3305	chrX	13937994	intron	mamo -	chrX	13939646	intron	mamo -	chrX	13941299	intron	mamo -	chrX_5_13935001	chrX_13935001	RAL-832
1914	chrX	14157576	14157615	chrX	14163253	14163274	297	7	5671	8.0	5.0	6.5	0.9	5698	chrX	14157576	intergenic	not near genes	chrX	14160425	intergenic	not near genes	chrX	14163274	intergenic	not near genes	chrX_7_14160001	chrX_14160001	RAL-832
1918	chrX	14416293	14416333	chrX	14421080	14421119	F-element	9	4787	2.5	3.5	3.0	2.2	4826	chrX	14416293	intron	dpr8 +	chrX	14418706	intron	dpr8 +	chrX	14421119	intron	dpr8 +	chrX_9_14415001	chrX_14415001	RAL-832
1921	chrX	14589685	14589706	chrX	14589920	14589940	pogo	4	244	2.0	0.0	1.0	2.0	255	chrX	14589685	intron	CG9413 -	chrX	14589812	intron	CG9413 -	chrX	14589940	intron	CG9413 -	chrX_4_14585001	chrX_14585001	RAL-832
1924	chrX	14778027	14778041	chrX	14782824	14782858	Doc	6	4812	5.5	3.0	4.2	1.2	4831	chrX	14778027	intergenic	CG5347 +	chrX	14780442	intergenic	not near genes	chrX	14782858	intergenic	Ag5r2 -	chrX_6_14780001	chrX_14780001	RAL-832
1927	chrX	14936854	14936893	chrX	14946131	14946160	roo	5	9273	2.5	2.5	2.5	1.4	9306	chrX	14936854	intron	pdgy -	chrX	14941507	intron	pdgy -	chrX	14946160	intron	pdgy -	chrX_5_14940001	chrX_14940001	RAL-832
1936	chrX	15413037	15413083	chrX	15417358	15417388	Juan	6	4306	2.0	2.5	2.2	1.9	4351	chrX	15413037	intron	Cngl -	chrX	15415212	intron	Cngl -	chrX	15417388	intron	Cngl -	chrX_6_15415001	chrX_15415001	RAL-832
1943	chrX	16222757	16222809	chrX	16231127	16231179	roo	20	8364	3.0	5.0	4.0	4.0	8422	chrX	16222757	intergenic	not near genes	chrX	16226968	intergenic	not near genes	chrX	16231179	intergenic	not near genes	chrX_20_16225001	chrX_16225001	RAL-832
1945	chrX	16340661	16340695	chrX	16349823	16349872	roo	11	9175	5.0	4.0	4.5	2.0	9211	chrX	16340661	intergenic	Dsp1 +	chrX	16345266	intergenic	not near genes	chrX	16349872	intergenic	sl +	chrX_11_16345001	chrX_16345001	RAL-832
1947	chrX	16492627	16492677	chrX	16498224	16498258	mdg3	13	5593	3.5	2.0	2.8	3.4	5631	chrX	16492627	intron	para -	chrX	16495442	intron	para -	chrX	16498258	intron	para -	chrX_13_16495001	chrX_16495001	RAL-832
1951	chrX	17057914	17057965	chrX	17058175	17058226	pogo	4	261	3.5	3.5	3.5	0.9	312	chrX	17057914	intron	CG45002 -	chrX	17058070	intron	CG45002 -	chrX	17058226	intron	CG45002 -	chrX_4_17055001	chrX_17055001	RAL-832
1953	chrX	17195187	17195232	chrX	17200292	17200338	flea	10	5103	4.0	3.5	3.8	2.1	5151	chrX	17195187	3` UTR	baz +	chrX	17197762	3` UTR	baz +	chrX	17200338	3` UTR	baz +	chrX_10_17195001	chrX_17195001	RAL-832
1965	chrX	18194067	18194092	chrX	18194606	18194628	BS	11	545	4.0	3.0	3.5	2.4	561	chrX	18194067	intron	Frq2 +	chrX	18194348	intron	Frq2 +	chrX	18194628	intron	Frq2 +	chrX_11_18190001	chrX_18190001	RAL-832
1968	chrX	18429475	18429514	chrX	18434806	18434835	Transpac	6	5325	3.5	3.0	3.2	1.4	5360	chrX	18429475	intergenic	not near genes	chrX	18432155	intergenic	not near genes	chrX	18434835	intergenic	not near genes	chrX_6_18430001	chrX_18430001	RAL-832
1980	chrX	18957055	18957089	chrX	18965738	18965772	roo	8	8682	2.5	2.5	2.5	2.3	8717	chrX	18957055	intron	CG43759 +	chrX	18961414	intron	CG43759 +	chrX	18965772	intron	CG43759 +	chrX_8_18960001	chrX_18960001	RAL-832
1987	chrX	19356968	19357020	chrX	19358429	19358497	NOF	10	1456	4.5	0.0	2.2	3.1	1529	chrX	19356968	intron	kek5 +	chrX	19357732	intron	kek5 +	chrX	19358497	intron	kek5 +	chrX_10_19355001	chrX_19355001	RAL-832
1988	chrX	19472104	19472138	chrX	19472688	19472719	jockey	5	583	2.5	2.0	2.2	1.6	615	chrX	19472104	intergenic	kek5 +	chrX	19472412	intergenic	kek5 +	chrX	19472719	intergenic	not near genes	chrX_5_19470001	chrX_19470001	RAL-832
1990	chrX	19710071	19710102	chrX	19711860	19711898	S-element	4	1791	1.0	1.0	1.0	2.0	1827	chrX	19710071	intron	meso18E -	chrX	19710984	intron	meso18E -	chrX	19711898	intron	meso18E -	chrX_4_19710001	chrX_19710001	RAL-832
2013	chrX	20836716	20836759	chrX	20844337	20844365	roo	10	7612	1.0	1.5	1.2	4.5	7649	chrX	20836716	intron	shakB -	chrX	20840540	intron	shakB -	chrX	20844365	intron	shakB -	chrX_10_20840001	chrX_20840001	RAL-832
2014	chrX	20940712	20940747	chrX	20942193	20942211	hobo	8	1479	3.0	2.0	2.5	2.3	1499	chrX	20940712	intergenic	not near genes	chrX	20941462	intergenic	not near genes	chrX	20942211	intergenic	not near genes	chrX_8_20940001	chrX_20940001	RAL-832
2019	chrX	21061868	21061883	chrX	21062372	21062388	roo	5	504	6.5	6.5	6.5	0.7	520	chrX	21061868	intron	bves +	chrX	21062128	intron	bves +	chrX	21062388	intron,3` UTR	bves +,CG32512 -	chrX_5_21060001	chrX_21060001	RAL-832
2020	chrX	21086120	21086157	chrX	21087169	21087206	jockey	5	1044	3.0	6.5	4.8	0.9	1086	chrX	21086120	intergenic	not near genes	chrX	21086663	intergenic	not near genes	chrX	21087206	intergenic	not near genes	chrX_5_21085001	chrX_21085001	RAL-832
2025	chrX	21458694	21458724	chrX	21464132	21464180	Ivk	6	5452	5.5	5.0	5.2	1.0	5486	chrX	21458694	intergenic	not near genes	chrX	21461437	intergenic	not near genes	chrX	21464180	intergenic	not near genes	chrX_6_21460001	chrX_21460001	RAL-832
2029	chrX	22522624	22522659	chrX	22525464	22525483	NOF	4	2836	2.5	1.0	1.8	1.4	2859	chrX	22522624	intron	CG17600 +	chrX	22524054	intron	CG17600 +	chrX	22525483	intron	CG17600 +	chrX_4_22520001	chrX_22520001	RAL-832
2031	chrX	22697478	22697511	chrX	22701795	22701828	Juan	6	4315	4.0	3.5	3.8	1.2	4350	chrX	22697478	intron	CR44997 +	chrX	22699653	intron	CR44997 +	chrX	22701828	intron	CR44997 +	chrX_6_22695001	chrX_22695001	RAL-832
2035	chrX	22987105	22987136	chrX	22989763	22989795	Burdock	6	2660	2.5	3.0	2.8	1.6	2690	chrX	22987105	intron,intron	stnA -,stnB -	chrX	22988450	intron,intron	stnA -,stnB -	chrX	22989795	intron,intron	stnA -,stnB -	chrX_6_22985001	chrX_22985001	RAL-832
2036	chrX	22996318	22996337	chrX	23003543	23003581	roo	8	7242	2.5	3.5	3.0	2.0	7263	chrX	22996318	intron,intron	stnA -,stnB -	chrX	22999950	intron,intron	stnA -,stnB -	chrX	23003581	intron,intron	stnA -,stnB -	chrX_8_22995001	chrX_22995001	RAL-832
2037	chrX	23036361	23036413	chrX	23037782	23037796	pogo	5	1407	2.5	0.5	1.5	2.0	1435	chrX	23036361	intron	CG12061 +	chrX	23037078	intron	CG12061 +	chrX	23037796	intron	CG12061 +	chrX_5_23035001	chrX_23035001	RAL-832