SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47461 47481 chr2L 52566 52585 jockey 4 5105 4.0 2.0 3.0 1.0 5124 chr2L 47461 intron Cda5 - chr2L 50023 intron Cda5 - chr2L 52585 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-820 2 chr2L 325131 325155 chr2L 325207 325231 5 76 4.0 2.5 3.2 1.2 100 chr2L 325131 intron Plc21C + chr2L 325181 intron Plc21C + chr2L 325231 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-820 3 chr2L 347885 347917 chr2L 355385 355416 blood 7 7500 2.0 1.5 1.8 2.5 7531 chr2L 347885 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355416 3` UTR Plc21C + chr2L_7_350001 chr2L_350001 RAL-820 4 chr2L 501642 501661 chr2L 501728 501747 4 85 1.5 4.0 2.8 1.1 105 chr2L 501642 intron ush + chr2L 501694 intron ush + chr2L 501747 intron ush + chr2L_4_500001 chr2L_500001 RAL-820 5 chr2L 736883 736901 chr2L 736986 737006 5 105 2.5 2.0 2.2 1.6 123 chr2L 736883 intergenic Eaat2 - chr2L 736944 intergenic Eaat2 - chr2L 737006 intergenic Eaat2 - chr2L_5_735001 chr2L_735001 RAL-820 6 chr2L 770466 770478 chr2L 772246 772256 Bari1 7 1779 3.5 1.5 2.5 2.0 1790 chr2L 770466 intergenic not near genes chr2L 771361 intergenic not near genes chr2L 772256 intergenic CR44614 + chr2L_7_770001 chr2L_770001 RAL-820 7 chr2L 770481 770494 chr2L 772244 772275 Bari1 6 1776 1.5 1.5 1.5 2.4 1794 chr2L 770481 intergenic not near genes chr2L 771378 intergenic not near genes chr2L 772275 intergenic CR44614 + chr2L_6_770001 chr2L_770001 RAL-820 8 chr2L 795261 795282 chr2L 795371 795392 7 110 3.5 0.0 1.8 2.5 131 chr2L 795261 intergenic not near genes chr2L 795326 intergenic not near genes chr2L 795392 intergenic not near genes chr2L_7_795001 chr2L_795001 RAL-820 9 chr2L 826924 826933 chr2L 827002 827012 4 79 4.5 5.0 4.8 0.7 88 chr2L 826924 intron dock + chr2L 826968 intron dock + chr2L 827012 intron dock + chr2L_4_825001 chr2L_825001 RAL-820 10 chr2L 877841 877860 chr2L 877922 877941 7 81 4.0 1.0 2.5 2.0 100 chr2L 877841 3` UTR,exon CG15824 -,ninaA + chr2L 877891 3` UTR,intron CG15824 -,ninaA + chr2L 877941 3` UTR,intron CG15824 -,ninaA + chr2L_7_875001 chr2L_875001 RAL-820 11 chr2L 908380 908405 chr2L 908459 908485 13 79 3.5 4.0 3.8 2.7 105 chr2L 908380 intergenic not near genes chr2L 908432 intergenic not near genes chr2L 908485 intergenic not near genes chr2L_13_905001 chr2L_905001 RAL-820 12 chr2L 922463 922493 chr2L 922544 922574 9 81 0.0 0.5 0.2 7.5 111 chr2L 922463 intergenic CG4341 + chr2L 922518 intergenic CG4341 + chr2L 922574 intergenic CG4341 + chr2L_9_920001 chr2L_920001 RAL-820 13 chr2L 931642 931668 chr2L 931718 931747 6 78 2.5 3.0 2.8 1.6 105 chr2L 931642 intron CG4341 + chr2L 931694 intron CG4341 + chr2L 931747 intron CG4341 + chr2L_6_930001 chr2L_930001 RAL-820 14 chr2L 976885 976905 chr2L 984521 984541 roo 4 7636 3.5 3.5 3.5 0.9 7656 chr2L 976885 intergenic not near genes chr2L 980713 intergenic not near genes chr2L 984541 intergenic not near genes chr2L_4_980001 chr2L_980001 RAL-820 15 chr2L 1035565 1035590 chr2L 1035642 1035667 5 77 3.5 0.5 2.0 1.7 102 chr2L 1035565 intron IA-2 - chr2L 1035616 intron IA-2 - chr2L 1035667 intron IA-2 - chr2L_5_1035001 chr2L_1035001 RAL-820 16 chr2L 1066095 1066126 chr2L 1066176 1066207 9 81 2.0 5.0 3.5 2.0 112 chr2L 1066095 intron S - chr2L 1066151 intron S - chr2L 1066207 intron S - chr2L_9_1065001 chr2L_1065001 RAL-820 17 chr2L 1137662 1137676 chr2L 1137842 1137856 8 180 3.0 3.0 3.0 2.0 194 chr2L 1137662 intron CG4577 + chr2L 1137759 intron CG4577 + chr2L 1137856 intron CG4577 + chr2L_8_1135001 chr2L_1135001 RAL-820 18 chr2L 1220127 1220161 chr2L 1227593 1227627 blood 11 7466 2.0 1.0 1.5 4.4 7500 chr2L 1220127 intron CG42329 + chr2L 1223877 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_11_1220001 chr2L_1220001 RAL-820 19 chr2L 1236397 1236420 chr2L 1236571 1236577 4 169 5.5 3.5 4.5 0.7 180 chr2L 1236397 intergenic not near genes chr2L 1236487 intergenic not near genes chr2L 1236577 intergenic not near genes chr2L_4_1235001 chr2L_1235001 RAL-820 20 chr2L 1312867 1312899 chr2L 1312954 1312986 4 86 0.5 3.0 1.8 1.4 119 chr2L 1312867 intergenic not near genes chr2L 1312926 intergenic not near genes chr2L 1312986 intergenic not near genes chr2L_4_1310001 chr2L_1310001 RAL-820 21 chr2L 1327176 1327191 chr2L 1327576 1327590 6 400 4.5 1.0 2.8 1.6 414 chr2L 1327176 intergenic not near genes chr2L 1327383 intergenic not near genes chr2L 1327590 intergenic not near genes chr2L_6_1325001 chr2L_1325001 RAL-820 22 chr2L 1526513 1526543 chr2L 1526607 1526637 8 94 3.0 2.0 2.5 2.3 124 chr2L 1526513 intergenic not near genes chr2L 1526575 intergenic not near genes chr2L 1526637 intergenic not near genes chr2L_8_1525001 chr2L_1525001 RAL-820 23 chr2L 1541055 1541065 chr2L 1541133 1541143 4 78 5.0 4.5 4.8 0.7 88 chr2L 1541055 intergenic not near genes chr2L 1541099 intergenic not near genes chr2L 1541143 intergenic not near genes chr2L_4_1540001 chr2L_1540001 RAL-820 24 chr2L 1570688 1570720 chr2L 1573560 1573592 F-element 11 2872 2.0 1.5 1.8 3.9 2904 chr2L 1570688 intron haf + chr2L 1572140 intron haf + chr2L 1573592 intron haf + chr2L_11_1570001 chr2L_1570001 RAL-820 25 chr2L 1622808 1622842 chr2L 1622894 1622928 6 82 2.0 1.5 1.8 2.1 120 chr2L 1622808 3` UTR CR44603 - chr2L 1622868 3` UTR CR44603 - chr2L 1622928 3` UTR CR44603 - chr2L_6_1620001 chr2L_1620001 RAL-820 26 chr2L 1678976 1679000 chr2L 1686441 1686465 blood 8 7465 1.0 4.0 2.5 2.3 7489 chr2L 1678976 intron chinmo + chr2L 1682720 intron chinmo + chr2L 1686465 intron chinmo + chr2L_8_1680001 chr2L_1680001 RAL-820 27 chr2L 1711354 1711385 chr2L 1711678 1711709 mdg3 11 322 4.5 3.5 4.0 2.2 355 chr2L 1711354 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711532 3` UTR frtz - chr2L 1711709 3` UTR frtz - chr2L_11_1710001 chr2L_1710001 RAL-820 28 chr2L 1721828 1721856 chr2L 1721912 1721940 5 84 0.5 5.0 2.8 1.3 112 chr2L 1721828 intron Rim2 - chr2L 1721884 intron Rim2 - chr2L 1721940 intron Rim2 - chr2L_5_1720001 chr2L_1720001 RAL-820 29 chr2L 1753216 1753219 chr2L 1753303 1753305 4 87 0.0 2.0 1.0 2.0 89 chr2L 1753216 intergenic CG17648 + chr2L 1753260 intergenic CG17648 + chr2L 1753305 intergenic CG17648 + chr2L_4_1750001 chr2L_1750001 RAL-820 30 chr2L 1842293 1842317 chr2L 1842369 1842393 5 76 1.5 1.0 1.2 2.3 100 chr2L 1842293 intron wry + chr2L 1842343 intron wry + chr2L 1842393 intron wry + chr2L_5_1840001 chr2L_1840001 RAL-820 31 chr2L 1857903 1857936 chr2L 1857982 1858015 6 79 2.5 2.0 2.2 1.9 112 chr2L 1857903 3` UTR wry + chr2L 1857959 3` UTR wry + chr2L 1858015 3` UTR wry + chr2L_6_1855001 chr2L_1855001 RAL-820 32 chr2L 1872175 1872207 chr2L 1872272 1872304 5 95 1.0 0.5 0.8 2.8 129 chr2L 1872175 intron CG31663 - chr2L 1872240 intron CG31663 - chr2L 1872304 intron CG31663 - chr2L_5_1870001 chr2L_1870001 RAL-820 33 chr2L 1910541 1910548 chr2L 1910630 1910637 6 89 2.5 1.5 2.0 2.0 96 chr2L 1910541 intron CG7337 + chr2L 1910589 intron CG7337 + chr2L 1910637 intron CG7337 + chr2L_6_1910001 chr2L_1910001 RAL-820 34 chr2L 2024510 2024548 chr2L 2024598 2024636 4 88 1.5 1.0 1.2 1.8 126 chr2L 2024510 intron CG4238 + chr2L 2024573 intron CG4238 + chr2L 2024636 intron CG4238 + chr2L_4_2020001 chr2L_2020001 RAL-820 35 chr2L 2100378 2100407 chr2L 2109529 2109558 roo 10 9148 2.0 4.5 3.2 2.4 9180 chr2L 2100378 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109558 intron dpr3 - chr2L_10_2100001 chr2L_2100001 RAL-820 36 chr2L 2112124 2112131 chr2L 2119786 2119793 opus 5 7661 2.5 3.5 3.0 1.2 7669 chr2L 2112124 intergenic not near genes chr2L 2115958 intergenic not near genes chr2L 2119793 intergenic not near genes chr2L_5_2115001 chr2L_2115001 RAL-820 37 chr2L 2199243 2199267 chr2L 2199823 2199847 6 580 1.0 1.5 1.2 2.7 604 chr2L 2199243 intergenic not near genes chr2L 2199545 intergenic not near genes chr2L 2199847 intergenic not near genes chr2L_6_2195001 chr2L_2195001 RAL-820 38 chr2L 2294041 2294069 chr2L 2299246 2299274 copia 10 5203 1.5 2.0 1.8 3.6 5233 chr2L 2294041 intergenic not near genes chr2L 2296658 intergenic not near genes chr2L 2299274 intergenic not near genes chr2L_10_2295001 chr2L_2295001 RAL-820 39 chr2L 2311079 2311092 chr2L 2311175 2311188 5 96 2.0 2.5 2.2 1.6 109 chr2L 2311079 intron CG9967 - chr2L 2311134 intron CG9967 - chr2L 2311188 intron CG9967 - chr2L_5_2310001 chr2L_2310001 RAL-820 40 chr2L 2667637 2667653 chr2L 2667715 2667732 5 79 2.0 2.5 2.2 1.6 95 chr2L 2667637 intergenic not near genes chr2L 2667684 intergenic not near genes chr2L 2667732 intergenic not near genes chr2L_5_2665001 chr2L_2665001 RAL-820 41 chr2L 2698869 2698892 chr2L 2698956 2698979 9 86 0.5 0.5 0.5 6.0 110 chr2L 2698869 intron CG31690 + chr2L 2698924 intron CG31690 + chr2L 2698979 intron CG31690 + chr2L_9_2695001 chr2L_2695001 RAL-820 42 chr2L 2702982 2703008 chr2L 2703183 2703208 6 200 4.0 0.5 2.2 1.9 226 chr2L 2702982 intron CG31690 + chr2L 2703095 intron CG31690 + chr2L 2703208 intron CG31690 + chr2L_6_2700001 chr2L_2700001 RAL-820 43 chr2L 2826567 2826572 chr2L 2826652 2826657 4 85 0.0 6.5 3.2 1.0 90 chr2L 2826567 intron Duox - chr2L 2826612 intron Duox - chr2L 2826657 intron Duox - chr2L_4_2825001 chr2L_2825001 RAL-820 44 chr2L 2895691 2895714 chr2L 2895777 2895800 6 86 3.5 2.0 2.8 1.6 109 chr2L 2895691 intron lilli + chr2L 2895746 intron lilli + chr2L 2895800 intron lilli + chr2L_6_2895001 chr2L_2895001 RAL-820 45 chr2L 2932449 2932467 chr2L 2932906 2932924 5 457 3.5 1.5 2.5 1.4 475 chr2L 2932449 intron lilli + chr2L 2932686 intron lilli + chr2L 2932924 intron lilli + chr2L_5_2930001 chr2L_2930001 RAL-820 46 chr2L 2937424 2937450 chr2L 2937501 2937527 5 77 1.5 1.0 1.2 2.3 103 chr2L 2937424 intron lilli + chr2L 2937476 intron lilli + chr2L 2937527 intron lilli + chr2L_5_2935001 chr2L_2935001 RAL-820 47 chr2L 3001610 3001633 chr2L 3001692 3001716 7 82 3.0 5.5 4.2 1.3 106 chr2L 3001610 intron CG17265 + chr2L 3001663 intron CG17265 + chr2L 3001716 intron CG17265 + chr2L_7_3000001 chr2L_3000001 RAL-820 48 chr2L 3073030 3073065 chr2L 3078233 3078267 copia 7 5203 3.5 3.0 3.2 1.7 5237 chr2L 3073030 intron toc - chr2L 3075648 intron toc - chr2L 3078267 intron toc - chr2L_7_3075001 chr2L_3075001 RAL-820 49 chr2L 3108866 3108899 chr2L 3108942 3108973 12 77 0.5 0.0 0.2 10.0 107 chr2L 3108866 intron toc - chr2L 3108920 intron toc - chr2L 3108973 intron toc - chr2L_12_3105001 chr2L_3105001 RAL-820 50 chr2L 3152511 3152523 chr2L 3152597 3152609 4 86 1.5 2.5 2.0 1.3 98 chr2L 3152511 intron Mad - chr2L 3152560 intron Mad - chr2L 3152609 intron Mad - chr2L_4_3150001 chr2L_3150001 RAL-820 51 chr2L 3192216 3192236 chr2L 3192327 3192346 5 110 2.5 1.5 2.0 1.7 130 chr2L 3192216 exon CG34393 - chr2L 3192281 intron CG34393 - chr2L 3192346 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-820 52 chr2L 3236914 3236949 chr2L 3236994 3237029 6 79 2.0 2.0 2.0 2.0 115 chr2L 3236914 intergenic not near genes chr2L 3236972 intergenic not near genes chr2L 3237029 intergenic not near genes chr2L_6_3235001 chr2L_3235001 RAL-820 53 chr2L 3251506 3251527 chr2L 3259071 3259092 springer 6 7565 1.5 4.5 3.0 1.5 7586 chr2L 3251506 intergenic not near genes chr2L 3255299 intergenic not near genes chr2L 3259092 intergenic not near genes chr2L_6_3255001 chr2L_3255001 RAL-820 54 chr2L 3291259 3291267 chr2L 3291339 3291347 4 80 0.5 6.5 3.5 0.9 88 chr2L 3291259 3` UTR CG9664 - chr2L 3291303 3` UTR CG9664 - chr2L 3291347 3` UTR CG9664 - chr2L_4_3290001 chr2L_3290001 RAL-820 55 chr2L 3395030 3395047 chr2L 3395112 3395129 7 82 4.0 2.0 3.0 1.8 99 chr2L 3395030 intergenic not near genes chr2L 3395080 intergenic not near genes chr2L 3395129 intergenic not near genes chr2L_7_3395001 chr2L_3395001 RAL-820 56 chr2L 3432433 3432463 chr2L 3432508 3432540 11 75 0.5 2.0 1.2 5.0 107 chr2L 3432433 intergenic not near genes chr2L 3432486 intergenic not near genes chr2L 3432540 intergenic not near genes chr2L_11_3430001 chr2L_3430001 RAL-820 57 chr2L 3523033 3523054 chr2L 3523146 3523167 7 113 1.5 3.0 2.2 2.2 134 chr2L 3523033 exon Sr-CIV - chr2L 3523100 intron Sr-CIV - chr2L 3523167 exon Sr-CIV - chr2L_7_3520001 chr2L_3520001 RAL-820 58 chr2L 3575425 3575456 chr2L 3575538 3575569 9 111 1.5 0.5 1.0 4.5 144 chr2L 3575425 5` UTR CR43822 + chr2L 3575497 5` UTR CR43822 + chr2L 3575569 5` UTR CR43822 + chr2L_9_3575001 chr2L_3575001 RAL-820 59 chr2L 3582878 3582907 chr2L 3582955 3582984 12 76 1.0 1.0 1.0 6.0 106 chr2L 3582878 intergenic not near genes chr2L 3582931 intergenic not near genes chr2L 3582984 intergenic not near genes chr2L_12_3580001 chr2L_3580001 RAL-820 60 chr2L 3603636 3603648 chr2L 3603725 3603744 7 95 2.0 1.0 1.5 2.8 108 chr2L 3603636 intergenic not near genes chr2L 3603690 intergenic not near genes chr2L 3603744 intergenic odd - chr2L_7_3600001 chr2L_3600001 RAL-820 61 chr2L 3663307 3663332 chr2L 3663386 3663411 7 78 3.0 4.0 3.5 1.6 104 chr2L 3663307 intron CG34340 + chr2L 3663359 intron CG34340 + chr2L 3663411 intron CG34340 + chr2L_7_3660001 chr2L_3660001 RAL-820 62 chr2L 3702902 3702924 chr2L 3702988 3703009 9 84 1.0 2.0 1.5 3.6 107 chr2L 3702902 5` UTR CR44311 + chr2L 3702956 intergenic CR44311 + chr2L 3703009 intergenic CR44311 + chr2L_9_3700001 chr2L_3700001 RAL-820 63 chr2L 3783255 3783268 chr2L 3783345 3783359 4 91 4.0 1.0 2.5 1.1 104 chr2L 3783255 exon bowl + chr2L 3783307 3` UTR bowl + chr2L 3783359 3` UTR bowl + chr2L_4_3780001 chr2L_3780001 RAL-820 64 chr2L 3891898 3891924 chr2L 3891983 3892009 5 85 3.0 2.5 2.8 1.3 111 chr2L 3891898 intron capu - chr2L 3891954 intron capu - chr2L 3892009 intron capu - chr2L_5_3890001 chr2L_3890001 RAL-820 65 chr2L 3939233 3939266 chr2L 3939316 3939346 10 82 1.0 3.5 2.2 3.1 113 chr2L 3939233 intron fred - chr2L 3939290 intron fred - chr2L 3939346 intron fred - chr2L_10_3935001 chr2L_3935001 RAL-820 66 chr2L 3943805 3943827 chr2L 3943896 3943918 6 91 2.0 5.5 3.8 1.2 113 chr2L 3943805 intron fred - chr2L 3943862 intron fred - chr2L 3943918 intron fred - chr2L_6_3940001 chr2L_3940001 RAL-820 67 chr2L 3978387 3978392 chr2L 3978517 3978523 4 130 2.5 6.5 4.5 0.7 136 chr2L 3978387 intron fred - chr2L 3978455 intron fred - chr2L 3978523 intron fred - chr2L_4_3975001 chr2L_3975001 RAL-820 68 chr2L 4020151 4020175 chr2L 4020297 4020321 5 146 4.0 3.5 3.8 1.0 170 chr2L 4020151 intergenic not near genes chr2L 4020236 intergenic not near genes chr2L 4020321 intergenic not near genes chr2L_5_4020001 chr2L_4020001 RAL-820 69 chr2L 4066042 4066055 chr2L 4068867 4068878 Juan 4 2824 4.0 2.0 3.0 1.0 2836 chr2L 4066042 intron ed + chr2L 4067460 intron ed + chr2L 4068878 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-820 70 chr2L 4125248 4125277 chr2L 4125353 4125381 9 105 1.0 2.0 1.5 3.6 133 chr2L 4125248 intergenic not near genes chr2L 4125314 intergenic not near genes chr2L 4125381 intergenic not near genes chr2L_9_4125001 chr2L_4125001 RAL-820 71 chr2L 4159408 4159437 chr2L 4159608 4159636 6 200 1.5 3.0 2.2 1.9 228 chr2L 4159408 intergenic not near genes chr2L 4159522 intergenic not near genes chr2L 4159636 intergenic not near genes chr2L_6_4155001 chr2L_4155001 RAL-820 72 chr2L 4166378 4166410 chr2L 4166461 4166492 5 83 1.0 1.5 1.2 2.3 114 chr2L 4166378 intergenic Or24a - chr2L 4166435 intergenic Or24a - chr2L 4166492 intergenic Or24a - chr2L_5_4165001 chr2L_4165001 RAL-820 73 chr2L 4184495 4184501 chr2L 4184814 4184820 4 319 0.5 3.0 1.8 1.4 325 chr2L 4184495 intergenic not near genes chr2L 4184658 intergenic not near genes chr2L 4184820 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-820 74 chr2L 4428521 4428539 chr2L 4428825 4428845 6 305 1.5 3.0 2.2 1.9 324 chr2L 4428521 intron CG15431 - chr2L 4428683 intron CG15431 - chr2L 4428845 intron CG15431 - chr2L_6_4425001 chr2L_4425001 RAL-820 75 chr2L 4601717 4601729 chr2L 4609156 4609170 mdg1 7 7441 5.5 2.5 4.0 1.4 7453 chr2L 4601717 intron dp - chr2L 4605444 intron dp - chr2L 4609170 intron dp - chr2L_7_4605001 chr2L_4605001 RAL-820 76 chr2L 4676859 4676883 chr2L 4676938 4676962 9 79 1.0 1.0 1.0 4.5 103 chr2L 4676859 intergenic not near genes chr2L 4676910 intergenic not near genes chr2L 4676962 intergenic not near genes chr2L_9_4675001 chr2L_4675001 RAL-820 77 chr2L 5120973 5121005 chr2L 5121067 5121099 11 92 0.0 3.5 1.8 3.9 126 chr2L 5120973 intron Msp300 + chr2L 5121036 intron Msp300 + chr2L 5121099 intron Msp300 + chr2L_11_5120001 chr2L_5120001 RAL-820 78 chr2L 5147742 5147753 chr2L 5147959 5147985 7 230 3.5 1.5 2.5 2.0 243 chr2L 5147742 intron Msp300 + chr2L 5147864 intron Msp300 + chr2L 5147985 intron Msp300 + chr2L_7_5145001 chr2L_5145001 RAL-820 79 chr2L 5200549 5200555 chr2L 5215798 5215803 4 15249 30.5 22.0 26.2 0.1 15254 chr2L 5200549 exon Msp300 + chr2L 5208176 exon Cyp28d2 + chr2L 5215803 exon CG14034 - chr2L_4_5205001 chr2L_5205001 RAL-820 80 chr2L 5242935 5242937 chr2L 16217660 16217660 8 10974724 14.0 13.0 13.5 0.6 10974725 chr2L 5242935 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_8_10730001 chr2L_10730001 RAL-820 81 chr2L 5342768 5342803 chr2L 5345148 5345182 Doc 6 2380 0.0 3.0 1.5 2.4 2414 chr2L 5342768 intergenic not near genes chr2L 5343975 intergenic not near genes chr2L 5345182 intergenic not near genes chr2L_6_5340001 chr2L_5340001 RAL-820 82 chr2L 5634176 5634207 chr2L 5634267 5634298 7 90 1.5 2.5 2.0 2.3 122 chr2L 5634176 intron CG31646 - chr2L 5634237 intron CG31646 - chr2L 5634298 intron CG31646 - chr2L_7_5630001 chr2L_5630001 RAL-820 83 chr2L 5676893 5676923 chr2L 5676989 5677019 8 96 0.5 2.0 1.2 3.6 126 chr2L 5676893 intergenic not near genes chr2L 5676956 intergenic not near genes chr2L 5677019 intergenic not near genes chr2L_8_5675001 chr2L_5675001 RAL-820 84 chr2L 5720262 5720294 chr2L 5720348 5720381 11 86 1.5 2.0 1.8 3.9 119 chr2L 5720262 intron CG11149 - chr2L 5720322 intron CG11149 - chr2L 5720381 intron CG11149 - chr2L_11_5720001 chr2L_5720001 RAL-820 85 chr2L 5827729 5827741 chr2L 5836737 5836749 roo 4 9008 3.5 2.5 3.0 1.0 9020 chr2L 5827729 intron TrissinR + chr2L 5832239 intron TrissinR + chr2L 5836749 intron TrissinR + chr2L_4_5830001 chr2L_5830001 RAL-820 86 chr2L 5846065 5846099 chr2L 5846262 5846295 6 196 0.5 1.0 0.8 3.3 230 chr2L 5846065 intron TrissinR + chr2L 5846180 intron TrissinR + chr2L 5846295 intron TrissinR + chr2L_6_5845001 chr2L_5845001 RAL-820 87 chr2L 5887602 5887634 chr2L 5887683 5887714 6 81 1.0 1.0 1.0 3.0 112 chr2L 5887602 3` UTR CR44577 - chr2L 5887658 3` UTR CR44577 - chr2L 5887714 3` UTR CR44577 - chr2L_6_5885001 chr2L_5885001 RAL-820 88 chr2L 5989035 5989065 chr2L 5989111 5989141 7 76 0.5 0.0 0.2 5.8 106 chr2L 5989035 intergenic ifc +,lid - chr2L 5989088 intergenic ifc +,lid - chr2L 5989141 intergenic lid -,ifc + chr2L_7_5985001 chr2L_5985001 RAL-820 89 chr2L 5993328 5993360 chr2L 5993419 5993451 7 91 3.0 2.5 2.8 1.8 123 chr2L 5993328 exon lid - chr2L 5993390 intron lid - chr2L 5993451 intron lid - chr2L_7_5990001 chr2L_5990001 RAL-820 90 chr2L 6007099 6007127 chr2L 6007175 6007203 6 76 1.0 0.0 0.5 4.0 104 chr2L 6007099 intergenic CG9098 -,Gal - chr2L 6007151 intergenic CG9098 -,Gal - chr2L 6007203 intergenic CG9098 -,Gal - chr2L_6_6005001 chr2L_6005001 RAL-820 91 chr2L 6021623 6021638 chr2L 6021700 6021716 8 77 4.5 0.0 2.2 2.5 93 chr2L 6021623 exon CG13996 + chr2L 6021670 exon CG13996 + chr2L 6021716 3` UTR CG13996 + chr2L_8_6020001 chr2L_6020001 RAL-820 92 chr2L 6037044 6037065 chr2L 6037122 6037144 7 78 2.0 3.0 2.5 2.0 100 chr2L 6037044 3` UTR CG9117 - chr2L 6037094 3` UTR CG9117 - chr2L 6037144 exon CG9117 - chr2L_7_6035001 chr2L_6035001 RAL-820 93 chr2L 6279646 6279654 chr2L 6279725 6279733 INE-1 4 79 3.0 1.5 2.2 1.2 87 chr2L 6279646 intron Ddr + chr2L 6279690 intron Ddr + chr2L 6279733 intron Ddr + chr2L_4_6275001 chr2L_6275001 RAL-820 94 chr2L 6363151 6363170 chr2L 6366073 6366092 Burdock 7 2922 2.0 3.0 2.5 2.0 2941 chr2L 6363151 intergenic not near genes chr2L 6364622 intergenic not near genes chr2L 6366092 intergenic not near genes chr2L_7_6360001 chr2L_6360001 RAL-820 95 chr2L 6363174 6363182 chr2L 6366071 6366091 Burdock 4 2908 1.5 3.0 2.2 1.2 2917 chr2L 6363174 intergenic not near genes chr2L 6364632 intergenic not near genes chr2L 6366091 intergenic not near genes chr2L_4_6360001 chr2L_6360001 RAL-820 96 chr2L 6426854 6426877 chr2L 6445113 6445137 roo 10 18260 4.0 3.5 3.8 2.1 18283 chr2L 6426854 3` UTR CG9527 - chr2L 6435996 intron CG9527 - chr2L 6445137 exon CG9527 - chr2L_10_6435001 chr2L_6435001 RAL-820 97 chr2L 6454530 6454542 chr2L 6454860 6454861 4 327 0.5 2.0 1.2 1.8 331 chr2L 6454530 intron retm - chr2L 6454696 intron retm - chr2L 6454861 intron retm - chr2L_4_6450001 chr2L_6450001 RAL-820 98 chr2L 6463553 6463565 chr2L 6463645 6463655 5 92 6.0 1.0 3.5 1.1 102 chr2L 6463553 exon CG16947 - chr2L 6463604 exon CG16947 - chr2L 6463655 exon CG16947 - chr2L_5_6460001 chr2L_6460001 RAL-820 99 chr2L 6472637 6472663 chr2L 6472742 6472768 7 104 1.0 3.0 2.0 2.3 131 chr2L 6472637 intron mmy - chr2L 6472702 intron mmy - chr2L 6472768 intron mmy - chr2L_7_6470001 chr2L_6470001 RAL-820 100 chr2L 6537151 6537163 chr2L 6537229 6537241 4 78 1.0 1.5 1.2 1.8 90 chr2L 6537151 intron eya - chr2L 6537196 intron eya - chr2L 6537241 intron eya - chr2L_4_6535001 chr2L_6535001 RAL-820 101 chr2L 6544370 6544385 chr2L 6544462 6544477 4 92 3.5 1.5 2.5 1.1 107 chr2L 6544370 intron eya - chr2L 6544424 intron eya - chr2L 6544477 intron eya - chr2L_4_6540001 chr2L_6540001 RAL-820 102 chr2L 6626884 6626920 chr2L 6626969 6627005 13 85 3.0 1.0 2.0 4.3 121 chr2L 6626884 intron Oatp26F - chr2L 6626944 intron Oatp26F - chr2L 6627005 intron Oatp26F - chr2L_13_6625001 chr2L_6625001 RAL-820 103 chr2L 6640905 6640938 chr2L 6641000 6641033 10 95 2.5 2.5 2.5 2.9 128 chr2L 6640905 exon CG31635 - chr2L 6640969 intron CG31635 - chr2L 6641033 intron CG31635 - chr2L_10_6640001 chr2L_6640001 RAL-820 104 chr2L 6715748 6715780 chr2L 6715833 6715862 5 84 2.0 2.0 2.0 1.7 114 chr2L 6715748 intron AkhR - chr2L 6715805 intron AkhR - chr2L 6715862 intron AkhR - chr2L_5_6715001 chr2L_6715001 RAL-820 105 chr2L 6799539 6799569 chr2L 6799626 6799656 6 88 0.0 0.5 0.2 5.0 117 chr2L 6799539 5` UTR CR43610 + chr2L 6799598 5` UTR CR43610 + chr2L 6799656 intergenic CR43610 +,CG17376 - chr2L_6_6795001 chr2L_6795001 RAL-820 106 chr2L 6876774 6876809 chr2L 6882964 6882995 diver 5 6189 2.5 2.5 2.5 1.4 6221 chr2L 6876774 intron Nlg2 + chr2L 6879884 intron Nlg2 + chr2L 6882995 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-820 107 chr2L 7111759 7111782 chr2L 7111845 7111868 7 86 3.0 0.0 1.5 2.8 109 chr2L 7111759 intron Pvf3 - chr2L 7111814 intron Pvf3 - chr2L 7111868 intron Pvf3 - chr2L_7_7110001 chr2L_7110001 RAL-820 108 chr2L 7225244 7225275 chr2L 7225328 7225358 8 83 1.0 2.0 1.5 3.2 114 chr2L 7225244 intron Ndae1 - chr2L 7225301 intron Ndae1 - chr2L 7225358 intron Ndae1 - chr2L_8_7225001 chr2L_7225001 RAL-820 109 chr2L 7244722 7244753 chr2L 7244846 7244877 6 124 1.0 2.0 1.5 2.4 155 chr2L 7244722 intron Ndae1 - chr2L 7244800 intron Ndae1 - chr2L 7244877 intron Ndae1 - chr2L_6_7240001 chr2L_7240001 RAL-820 110 chr2L 7343323 7343350 chr2L 7350439 7350466 roo 9 7115 2.5 3.5 3.0 2.2 7143 chr2L 7343323 intron Wnt6 + chr2L 7346894 intron Wnt6 + chr2L 7350466 intron Wnt6 + chr2L_9_7345001 chr2L_7345001 RAL-820 111 chr2L 7399305 7399326 chr2L 7399678 7399699 5 373 1.0 4.0 2.5 1.4 394 chr2L 7399305 intergenic not near genes chr2L 7399502 intergenic not near genes chr2L 7399699 intergenic not near genes chr2L_5_7395001 chr2L_7395001 RAL-820 112 chr2L 7461689 7461725 chr2L 7461793 7461829 16 103 2.0 3.5 2.8 4.2 140 chr2L 7461689 exon Gr28b - chr2L 7461759 exon Gr28b - chr2L 7461829 exon Gr28b - chr2L_16_7460001 chr2L_7460001 RAL-820 113 chr2L 7487299 7487330 chr2L 7487375 7487406 10 76 1.5 0.5 1.0 5.0 107 chr2L 7487299 intron Ziz - chr2L 7487352 intron Ziz - chr2L 7487406 intron Ziz - chr2L_10_7485001 chr2L_7485001 RAL-820 114 chr2L 7502739 7502765 chr2L 7502815 7502841 4 76 3.5 3.5 3.5 0.9 102 chr2L 7502739 intron RapGAP1 - chr2L 7502790 intron RapGAP1 - chr2L 7502841 intron RapGAP1 - chr2L_4_7500001 chr2L_7500001 RAL-820 115 chr2L 7520490 7520517 chr2L 7520593 7520620 5 103 1.5 2.5 2.0 1.7 130 chr2L 7520490 intron RapGAP1 - chr2L 7520555 intron RapGAP1 - chr2L 7520620 intron RapGAP1 - chr2L_5_7520001 chr2L_7520001 RAL-820 116 chr2L 7555219 7555231 chr2L 7555296 7555308 5 77 0.0 3.0 1.5 2.0 89 chr2L 7555219 intron RapGAP1 - chr2L 7555264 intron RapGAP1 - chr2L 7555308 intron RapGAP1 - chr2L_5_7555001 chr2L_7555001 RAL-820 117 chr2L 7829272 7829286 chr2L 7829370 7829383 6 98 3.5 2.0 2.8 1.6 111 chr2L 7829272 intron mts + chr2L 7829328 intron mts + chr2L 7829383 intron mts + chr2L_6_7825001 chr2L_7825001 RAL-820 118 chr2L 7959044 7959063 chr2L 7960455 7960473 pogo 7 1411 2.5 0.0 1.2 3.2 1429 chr2L 7959044 intron Snoo - chr2L 7959758 intron Snoo - chr2L 7960473 intron Snoo - chr2L_7_7955001 chr2L_7955001 RAL-820 119 chr2L 8013616 8013634 chr2L 8018820 8018838 copia 5 5203 1.5 0.0 0.8 2.8 5222 chr2L 8013616 intron Tg + chr2L 8016227 intron Tg + chr2L 8018838 intron Tg + chr2L_5_8015001 chr2L_8015001 RAL-820 120 chr2L 8018817 8018833 chr2L 8023601 8023617 Doc 4 4784 0.0 3.0 1.5 1.6 4800 chr2L 8018817 intron Tg + chr2L 8021217 intron Tg + chr2L 8023617 intron Tg + chr2L_4_8020001 chr2L_8020001 RAL-820 121 chr2L 8044070 8044090 chr2L 8044176 8044196 6 107 0.5 2.5 1.5 2.4 126 chr2L 8044070 exon CG7466 + chr2L 8044133 intron CG7466 + chr2L 8044196 intron CG7466 + chr2L_6_8040001 chr2L_8040001 RAL-820 122 chr2L 8184923 8184947 chr2L 8185013 8185038 9 91 3.0 6.5 4.8 1.6 115 chr2L 8184923 intron Piezo + chr2L 8184980 intron Piezo + chr2L 8185038 intron Piezo + chr2L_9_8180001 chr2L_8180001 RAL-820 123 chr2L 8244739 8244749 chr2L 8244861 8244871 4 122 0.0 3.0 1.5 1.6 132 chr2L 8244739 intron CG8086 - chr2L 8244805 intron CG8086 - chr2L 8244871 intron CG8086 - chr2L_4_8240001 chr2L_8240001 RAL-820 124 chr2L 8286312 8286327 chr2L 8286399 8286414 4 87 2.0 4.5 3.2 1.0 102 chr2L 8286312 intron Btk29A - chr2L 8286363 intron Btk29A - chr2L 8286414 intron Btk29A - chr2L_4_8285001 chr2L_8285001 RAL-820 125 chr2L 8418146 8418176 chr2L 8418245 8418275 14 99 2.0 5.0 3.5 3.1 129 chr2L 8418146 intron Akap200 + chr2L 8418210 intron Akap200 + chr2L 8418275 intron Akap200 + chr2L_14_8415001 chr2L_8415001 RAL-820 126 chr2L 8452422 8452443 chr2L 8461593 8461614 roo 7 9171 4.0 2.0 3.0 1.8 9192 chr2L 8452422 intron fu12 - chr2L 8457018 intron fu12 - chr2L 8461614 intron fu12 - chr2L_7_8455001 chr2L_8455001 RAL-820 127 chr2L 8612854 8612864 chr2L 8612931 8612941 4 77 1.5 3.5 2.5 1.1 87 chr2L 8612854 intron Sema-1a + chr2L 8612898 intron Sema-1a + chr2L 8612941 intron Sema-1a + chr2L_4_8610001 chr2L_8610001 RAL-820 128 chr2L 8723113 8723148 chr2L 8731490 8731525 Tirant 7 8377 2.0 1.0 1.5 2.8 8412 chr2L 8723113 intron raw - chr2L 8727319 intron raw - chr2L 8731525 intron raw - chr2L_7_8725001 chr2L_8725001 RAL-820 129 chr2L 8902449 8902470 chr2L 8902596 8902616 6 147 4.0 2.0 3.0 1.5 167 chr2L 8902449 intron CG34398 + chr2L 8902532 intron CG34398 + chr2L 8902616 intron CG34398 + chr2L_6_8900001 chr2L_8900001 RAL-820 130 chr2L 8997936 8997962 chr2L 8998054 8998080 7 118 3.0 4.0 3.5 1.6 144 chr2L 8997936 exon CG18661 + chr2L 8998008 exon CG18661 + chr2L 8998080 exon CG18661 + chr2L_7_8995001 chr2L_8995001 RAL-820 131 chr2L 9000280 9000308 chr2L 9007790 9007818 roo 10 7510 4.5 2.0 3.2 2.4 7538 chr2L 9000280 intergenic Try29F + chr2L 9004049 intergenic not near genes chr2L 9007818 intergenic not near genes chr2L_10_9000001 chr2L_9000001 RAL-820 132 chr2L 9053416 9053429 chr2L 9053651 9053664 6 235 1.5 0.0 0.8 3.3 248 chr2L 9053416 exon CG31708 - chr2L 9053540 intron CG31708 - chr2L 9053664 intron CG31708 - chr2L_6_9050001 chr2L_9050001 RAL-820 133 chr2L 9084339 9084340 chr2L 16217660 16217660 10 7133321 7.0 13.0 10.0 0.9 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_12650001 chr2L_12650001 RAL-820 134 chr2L 9114102 9114127 chr2L 9114181 9114205 7 78 1.5 1.0 1.2 3.2 103 chr2L 9114102 intergenic not near genes chr2L 9114154 intergenic not near genes chr2L 9114205 intergenic not near genes chr2L_7_9110001 chr2L_9110001 RAL-820 135 chr2L 9128575 9128596 chr2L 9128673 9128694 6 98 3.0 2.5 2.8 1.6 119 chr2L 9128575 intron CG32982 + chr2L 9128634 intron CG32982 + chr2L 9128694 intron CG32982 + chr2L_6_9125001 chr2L_9125001 RAL-820 136 chr2L 9217984 9218001 chr2L 9222755 9222786 Doc 4 4782 1.5 0.0 0.8 2.2 4802 chr2L 9217984 intron tai + chr2L 9220385 intron tai + chr2L 9222786 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-820 137 chr2L 9259217 9259242 chr2L 9259310 9259332 7 89 0.5 4.0 2.2 2.2 115 chr2L 9259217 intron Ggamma30A + chr2L 9259274 intron Ggamma30A + chr2L 9259332 intron Ggamma30A + chr2L_7_9255001 chr2L_9255001 RAL-820 138 chr2L 9285025 9285043 chr2L 9285101 9285119 7 76 1.0 0.5 0.8 3.9 94 chr2L 9285025 intron Ggamma30A + chr2L 9285072 intron Ggamma30A + chr2L 9285119 intron Ggamma30A + chr2L_7_9285001 chr2L_9285001 RAL-820 139 chr2L 9304510 9304519 chr2L 9304589 9304598 4 79 2.0 2.5 2.2 1.2 88 chr2L 9304510 3` UTR CR42844 - chr2L 9304554 3` UTR CR42844 - chr2L 9304598 3` UTR CR42844 - chr2L_4_9300001 chr2L_9300001 RAL-820 140 chr2L 9317425 9317562 chr2L 9317543 9317839 6 250 0.0 0.0 0.0 6.0 414 chr2L 9317425 intergenic not near genes chr2L 9317632 intergenic not near genes chr2L 9317839 intergenic not near genes chr2L_6_9315001 chr2L_9315001 RAL-820 141 chr2L 9385126 9385151 chr2L 9385211 9385241 6 89 3.0 3.0 3.0 1.5 115 chr2L 9385126 intron Shawl - chr2L 9385184 intron Shawl - chr2L 9385241 intron Shawl - chr2L_6_9385001 chr2L_9385001 RAL-820 142 chr2L 9393500 9393526 chr2L 9396467 9396493 jockey 5 2967 1.0 3.0 2.0 1.7 2993 chr2L 9393500 intron Shawl - chr2L 9394996 intron Shawl - chr2L 9396493 intron Shawl - chr2L_5_9390001 chr2L_9390001 RAL-820 143 chr2L 9398875 9398886 chr2L 9399064 9399075 8 188 0.0 2.5 1.2 3.6 200 chr2L 9398875 intron Shawl - chr2L 9398975 intron Shawl - chr2L 9399075 intron Shawl - chr2L_8_9395001 chr2L_9395001 RAL-820 144 chr2L 9493250 9493275 chr2L 9493333 9493359 7 84 4.0 3.5 3.8 1.5 109 chr2L 9493250 intron Gdi - chr2L 9493304 intron Gdi - chr2L 9493359 intron Gdi - chr2L_7_9490001 chr2L_9490001 RAL-820 145 chr2L 9506432 9506451 chr2L 9506582 9506601 4 150 0.5 3.0 1.8 1.4 169 chr2L 9506432 intron CG33298 + chr2L 9506516 intron CG33298 + chr2L 9506601 intron CG33298 + chr2L_4_9505001 chr2L_9505001 RAL-820 146 chr2L 9543764 9543787 chr2L 9543841 9543864 6 77 0.0 3.0 1.5 2.4 100 chr2L 9543764 intergenic Cpr30B +,CG13113 + chr2L 9543814 intergenic Cpr30B +,CG13113 + chr2L 9543864 intergenic Cpr30B +,CG13113 + chr2L_6_9540001 chr2L_9540001 RAL-820 147 chr2L 9973724 9973759 chr2L 9980843 9980877 HMS-Beagle 8 7118 4.0 0.5 2.2 2.5 7153 chr2L 9973724 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980877 intergenic not near genes chr2L_8_9975001 chr2L_9975001 RAL-820 148 chr2L 10100379 10100383 chr2L 10100445 10100465 4 78 2.0 2.5 2.2 1.2 86 chr2L 10100379 intron CG44153 - chr2L 10100422 intron CG44153 - chr2L 10100465 intron CG44153 - chr2L_4_10100001 chr2L_10100001 RAL-820 149 chr2L 10153209 10153230 chr2L 10153288 10153308 9 79 4.0 5.0 4.5 1.6 99 chr2L 10153209 intron,exon CG44153 -,CG4839 + chr2L 10153258 intron,intron CG44153 -,CG4839 + chr2L 10153308 intron,intron CG44153 -,CG4839 + chr2L_9_10150001 chr2L_10150001 RAL-820 150 chr2L 10156320 10156348 chr2L 10163790 10163818 blood 7 7469 1.5 1.0 1.2 3.2 7498 chr2L 10156320 intron,3` UTR CG44153 -,CG4839 + chr2L 10160069 intron CG44153 - chr2L 10163818 intron CG44153 - chr2L_7_10160001 chr2L_10160001 RAL-820 151 chr2L 10204502 10204523 chr2L 10204585 10204606 8 83 1.5 1.0 1.2 3.6 104 chr2L 10204502 intergenic CG34159 -,CG5734 - chr2L 10204554 intergenic CG5734 -,CG34159 - chr2L 10204606 intergenic CG5734 -,CG34159 - chr2L_8_10200001 chr2L_10200001 RAL-820 152 chr2L 10209847 10209857 chr2L 10209924 10209934 4 77 0.0 0.0 0.0 4.0 87 chr2L 10209847 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209890 3` UTR CG5727 - chr2L 10209934 3` UTR CG5727 - chr2L_4_10205001 chr2L_10205001 RAL-820 153 chr2L 10232931 10232941 chr2L 10233009 10233019 4 77 1.0 2.0 1.5 1.6 88 chr2L 10232931 intron eEF1delta + chr2L 10232975 intron eEF1delta + chr2L 10233019 intron eEF1delta + chr2L_4_10230001 chr2L_10230001 RAL-820 154 chr2L 10490275 10490307 chr2L 10490357 10490387 6 81 3.0 0.5 1.8 2.1 112 chr2L 10490275 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490331 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490387 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_6_10490001 chr2L_10490001 RAL-820 155 chr2L 10495303 10495464 chr2L 10495380 10495549 9 85 0.0 0.0 0.0 9.0 246 chr2L 10495303 intron Myo31DF - chr2L 10495426 intron Myo31DF - chr2L 10495549 intron Myo31DF - chr2L_9_10495001 chr2L_10495001 RAL-820 156 chr2L 10515361 10515390 chr2L 10515454 10515482 5 93 4.0 2.5 3.2 1.2 121 chr2L 10515361 intron,intron CG45083 -,Fatp - chr2L 10515422 intron,intron CG45083 -,Fatp - chr2L 10515482 intron,intron CG45083 -,Fatp - chr2L_5_10515001 chr2L_10515001 RAL-820 157 chr2L 10592841 10592873 chr2L 10600503 10600535 opus 6 7662 1.5 1.5 1.5 2.4 7694 chr2L 10592841 intron Trim9 + chr2L 10596688 intron Trim9 + chr2L 10600535 intron Trim9 + chr2L_6_10595001 chr2L_10595001 RAL-820 158 chr2L 10634750 10634789 chr2L 10634830 10634869 6 80 0.0 0.0 0.0 6.0 119 chr2L 10634750 intron CG7329 - chr2L 10634810 intron CG7329 - chr2L 10634869 intron CG7329 - chr2L_6_10630001 chr2L_10630001 RAL-820 159 chr2L 10701814 10701843 chr2L 10701900 10701929 8 86 2.5 0.0 1.2 3.6 115 chr2L 10701814 intergenic Lip2 -,Lip1 - chr2L 10701872 intergenic Lip2 -,Lip1 - chr2L 10701929 intergenic Lip2 -,Lip1 - chr2L_8_10700001 chr2L_10700001 RAL-820 160 chr2L 10748283 10748313 chr2L 10748478 10748508 6 195 3.0 2.0 2.5 1.7 225 chr2L 10748283 intron CG17124 - chr2L 10748396 intron CG17124 - chr2L 10748508 intron CG17124 - chr2L_6_10745001 chr2L_10745001 RAL-820 161 chr2L 10793316 10793349 chr2L 10793393 10793426 9 77 1.0 1.5 1.2 4.1 110 chr2L 10793316 intron CG31869 - chr2L 10793371 intron CG31869 - chr2L 10793426 intron CG31869 - chr2L_9_10790001 chr2L_10790001 RAL-820 162 chr2L 10912987 10912996 chr2L 10913065 10913075 4 78 4.0 2.5 3.2 1.0 88 chr2L 10912987 intergenic not near genes chr2L 10913031 intergenic not near genes chr2L 10913075 intergenic not near genes chr2L_4_10910001 chr2L_10910001 RAL-820 163 chr2L 10919799 10919829 chr2L 10919888 10919917 6 88 3.0 2.5 2.8 1.6 118 chr2L 10919799 intron dpr2 - chr2L 10919858 intron dpr2 - chr2L 10919917 intron dpr2 - chr2L_6_10915001 chr2L_10915001 RAL-820 164 chr2L 10946952 10946969 chr2L 10956167 10956182 roo 5 9214 7.0 9.5 8.2 0.5 9230 chr2L 10946952 intron dpr2 - chr2L 10951567 intron dpr2 - chr2L 10956182 intron dpr2 - chr2L_5_10950001 chr2L_10950001 RAL-820 165 chr2L 11183783 11183811 chr2L 11183879 11183906 8 96 1.0 2.0 1.5 3.2 123 chr2L 11183783 intron Ca-beta - chr2L 11183844 intron Ca-beta - chr2L 11183906 intron Ca-beta - chr2L_8_11180001 chr2L_11180001 RAL-820 166 chr2L 11246035 11246067 chr2L 11246144 11246161 5 106 1.0 0.5 0.8 2.8 126 chr2L 11246035 intron ab + chr2L 11246098 intron ab + chr2L 11246161 intron ab + chr2L_5_11245001 chr2L_11245001 RAL-820 167 chr2L 11292376 11292408 chr2L 11292458 11292490 7 82 3.0 4.0 3.5 1.6 114 chr2L 11292376 intergenic not near genes chr2L 11292433 intergenic not near genes chr2L 11292490 intergenic not near genes chr2L_7_11290001 chr2L_11290001 RAL-820 168 chr2L 11293726 11293738 chr2L 11293863 11293875 8 137 0.0 2.0 1.0 4.0 149 chr2L 11293726 intergenic not near genes chr2L 11293800 intergenic not near genes chr2L 11293875 intergenic not near genes chr2L_8_11290001 chr2L_11290001 RAL-820 169 chr2L 11455168 11455201 chr2L 11455246 11455279 10 78 1.0 0.5 0.8 5.6 111 chr2L 11455168 intergenic not near genes chr2L 11455224 intergenic not near genes chr2L 11455279 intergenic not near genes chr2L_10_11455001 chr2L_11455001 RAL-820 170 chr2L 11537979 11538005 chr2L 11538072 11538098 7 93 0.0 2.0 1.0 3.5 119 chr2L 11537979 intergenic not near genes chr2L 11538038 intergenic not near genes chr2L 11538098 intergenic not near genes chr2L_7_11535001 chr2L_11535001 RAL-820 171 chr2L 11540592 11540612 chr2L 11547994 11548014 Tabor 4 7402 2.5 3.5 3.0 1.0 7422 chr2L 11540592 intergenic not near genes chr2L 11544303 intergenic not near genes chr2L 11548014 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-820 172 chr2L 11563645 11563665 chr2L 11568847 11568869 copia 7 5204 0.0 2.0 1.0 3.5 5224 chr2L 11563645 intergenic not near genes chr2L 11566257 intergenic not near genes chr2L 11568869 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-820 173 chr2L 11614074 11614086 chr2L 11615552 11615580 hopper2 5 1489 2.0 4.0 3.0 1.2 1506 chr2L 11614074 intron kek2 + chr2L 11614827 intron kek2 + chr2L 11615580 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-820 174 chr2L 11713505 11713532 chr2L 11720973 11720999 blood 8 7467 1.0 2.5 1.8 2.9 7494 chr2L 11713505 intergenic not near genes chr2L 11717252 intergenic not near genes chr2L 11720999 intergenic CR44143 + chr2L_8_11715001 chr2L_11715001 RAL-820 175 chr2L 11870945 11870973 chr2L 11871023 11871041 8 76 0.0 2.0 1.0 4.0 96 chr2L 11870945 intron Pde1c - chr2L 11870993 intron Pde1c - chr2L 11871041 intron Pde1c - chr2L_8_11870001 chr2L_11870001 RAL-820 176 chr2L 11883514 11883538 chr2L 11883697 11883723 8 184 1.0 1.5 1.2 3.6 209 chr2L 11883514 intron Pde1c - chr2L 11883618 intron Pde1c - chr2L 11883723 intron Pde1c - chr2L_8_11880001 chr2L_11880001 RAL-820 177 chr2L 11893038 11893069 chr2L 11893393 11893424 16 354 2.0 4.0 3.0 4.0 386 chr2L 11893038 intron Pde1c - chr2L 11893231 intron Pde1c - chr2L 11893424 intron Pde1c - chr2L_16_11890001 chr2L_11890001 RAL-820 178 chr2L 12031394 12031417 chr2L 12031475 12031498 5 81 1.0 2.5 1.8 1.8 104 chr2L 12031394 intron dmGlut + chr2L 12031446 intron dmGlut + chr2L 12031498 intron dmGlut + chr2L_5_12030001 chr2L_12030001 RAL-820 179 chr2L 12123253 12123275 chr2L 12123338 12123360 4 85 1.0 1.5 1.2 1.8 107 chr2L 12123253 intron CG17211 + chr2L 12123306 intron CG17211 + chr2L 12123360 intron CG17211 + chr2L_4_12120001 chr2L_12120001 RAL-820 180 chr2L 12153158 12153174 chr2L 12153482 12153498 9 324 0.5 3.5 2.0 3.0 340 chr2L 12153158 intron CG31760 + chr2L 12153328 intron CG31760 + chr2L 12153498 intron CG31760 + chr2L_9_12150001 chr2L_12150001 RAL-820 181 chr2L 12262843 12262869 chr2L 12262927 12262953 6 84 0.5 1.5 1.0 3.0 110 chr2L 12262843 intron aret + chr2L 12262898 intron aret + chr2L 12262953 intron aret + chr2L_6_12260001 chr2L_12260001 RAL-820 182 chr2L 12272166 12272197 chr2L 12272240 12272273 6 75 2.0 2.5 2.2 1.9 107 chr2L 12272166 intron aret + chr2L 12272220 intron aret + chr2L 12272273 intron aret + chr2L_6_12270001 chr2L_12270001 RAL-820 183 chr2L 12411006 12411038 chr2L 12411085 12411117 4 79 3.0 1.0 2.0 1.3 111 chr2L 12411006 intron vir-1 - chr2L 12411062 intron vir-1 - chr2L 12411117 intron vir-1 - chr2L_4_12410001 chr2L_12410001 RAL-820 184 chr2L 12426141 12426156 chr2L 12426222 12426239 7 83 5.0 5.5 5.2 1.1 98 chr2L 12426141 exon CG6405 + chr2L 12426190 exon CG6405 + chr2L 12426239 exon CG6405 + chr2L_7_12425001 chr2L_12425001 RAL-820 185 chr2L 12487898 12487904 chr2L 12487979 12487985 4 81 2.0 1.5 1.8 1.4 87 chr2L 12487898 intron bun - chr2L 12487942 intron bun - chr2L 12487985 intron bun - chr2L_4_12485001 chr2L_12485001 RAL-820 186 chr2L 12529244 12529440 chr2L 12529377 12529516 7 100 2.0 2.5 2.2 2.2 272 chr2L 12529244 intron bun - chr2L 12529380 intron bun - chr2L 12529516 intron bun - chr2L_7_12525001 chr2L_12525001 RAL-820 187 chr2L 12572502 12572514 chr2L 12572583 12572595 4 81 4.5 1.5 3.0 1.0 93 chr2L 12572502 intergenic not near genes chr2L 12572548 intergenic not near genes chr2L 12572595 intergenic not near genes chr2L_4_12570001 chr2L_12570001 RAL-820 188 chr2L 12693839 12693873 chr2L 12693916 12693950 8 77 1.5 0.0 0.8 4.4 111 chr2L 12693839 exon CG6153 + chr2L 12693894 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693950 3` UTR CG5780 - chr2L_8_12690001 chr2L_12690001 RAL-820 189 chr2L 12728927 12728948 chr2L 12729169 12729190 pogo 7 242 4.0 2.5 3.2 1.7 263 chr2L 12728927 intron MRP + chr2L 12729058 intron MRP + chr2L 12729190 exon MRP + chr2L_7_12725001 chr2L_12725001 RAL-820 190 chr2L 12731057 12731092 chr2L 12735824 12735858 F-element 11 4767 4.0 2.0 3.0 2.8 4801 chr2L 12731057 intron MRP + chr2L 12733458 intron MRP + chr2L 12735858 intron MRP + chr2L_11_12730001 chr2L_12730001 RAL-820 191 chr2L 12739173 12739204 chr2L 12743954 12743985 Doc 12 4781 5.5 2.5 4.0 2.4 4812 chr2L 12739173 exon MRP + chr2L 12741579 intron MRP + chr2L 12743985 exon MRP + chr2L_12_12740001 chr2L_12740001 RAL-820 192 chr2L 12791602 12791633 chr2L 12795277 12795308 F-element 7 3673 1.5 2.5 2.0 2.3 3706 chr2L 12791602 intergenic not near genes chr2L 12793455 intergenic not near genes chr2L 12795308 intergenic not near genes chr2L_7_12790001 chr2L_12790001 RAL-820 193 chr2L 12800466 12800493 chr2L 12800947 12800977 10 483 1.5 2.0 1.8 3.6 511 chr2L 12800466 intergenic not near genes chr2L 12800722 intergenic not near genes chr2L 12800977 intergenic not near genes chr2L_10_12800001 chr2L_12800001 RAL-820 194 chr2L 12933848 12933880 chr2L 12941315 12941347 blood 11 7466 2.5 3.0 2.8 2.9 7499 chr2L 12933848 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941347 intergenic not near genes chr2L_11_12935001 chr2L_12935001 RAL-820 195 chr2L 13136161 13136188 chr2L 13136242 13136269 11 80 1.5 2.0 1.8 3.9 108 chr2L 13136161 intergenic not near genes chr2L 13136215 intergenic not near genes chr2L 13136269 intergenic not near genes chr2L_11_13135001 chr2L_13135001 RAL-820 196 chr2L 13204316 13204334 chr2L 13204414 13204433 6 97 5.0 2.5 3.8 1.2 117 chr2L 13204316 intron Pect + chr2L 13204374 intron Pect + chr2L 13204433 intron Pect + chr2L_6_13200001 chr2L_13200001 RAL-820 197 chr2L 13241369 13241387 chr2L 13241468 13241486 7 99 2.0 2.0 2.0 2.3 117 chr2L 13241369 intron CG5945 + chr2L 13241428 intron CG5945 + chr2L 13241486 intron CG5945 + chr2L_7_13240001 chr2L_13240001 RAL-820 198 chr2L 13266397 13266402 chr2L 13266484 13266490 5 88 4.5 5.0 4.8 0.9 93 chr2L 13266397 intron CG44085 + chr2L 13266444 intron CG44085 + chr2L 13266490 intron CG44085 + chr2L_5_13265001 chr2L_13265001 RAL-820 199 chr2L 13374329 13374350 chr2L 13374415 13374437 6 87 4.0 2.5 3.2 1.4 108 chr2L 13374329 5` UTR CG6565 + chr2L 13374383 5` UTR CG6565 + chr2L 13374437 5` UTR CG6565 + chr2L_6_13370001 chr2L_13370001 RAL-820 200 chr2L 13405648 13405680 chr2L 13410445 13410475 Doc 10 4797 2.0 3.5 2.8 2.6 4827 chr2L 13405648 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410475 intron CG7110 + chr2L_10_13405001 chr2L_13405001 RAL-820 201 chr2L 13481453 13481475 chr2L 13482060 13482082 jockey 4 606 3.5 3.5 3.5 0.9 629 chr2L 13481453 intron CG42784 + chr2L 13481768 intron CG42784 + chr2L 13482082 intron CG42784 + chr2L_4_13480001 chr2L_13480001 RAL-820 202 chr2L 13757013 13757037 chr2L 13757107 13757131 9 94 4.0 2.5 3.2 2.1 118 chr2L 13757013 intron TM9SF4 + chr2L 13757072 intron TM9SF4 + chr2L 13757131 intron TM9SF4 + chr2L_9_13755001 chr2L_13755001 RAL-820 203 chr2L 13761807 13761835 chr2L 13762918 13762946 Doc 8 1110 1.5 2.0 1.8 2.9 1139 chr2L 13761807 intron TM9SF4 + chr2L 13762376 intron TM9SF4 + chr2L 13762946 intron TM9SF4 + chr2L_8_13760001 chr2L_13760001 RAL-820 204 chr2L 13804702 13804716 chr2L 13804787 13804802 4 85 6.0 4.0 5.0 0.7 100 chr2L 13804702 intron CAH1 + chr2L 13804752 intron CAH1 + chr2L 13804802 intron CAH1 + chr2L_4_13800001 chr2L_13800001 RAL-820 205 chr2L 13853086 13853112 chr2L 13862236 13862262 roo 9 9150 2.0 2.0 2.0 3.0 9176 chr2L 13853086 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862262 intron CenG1A + chr2L_9_13855001 chr2L_13855001 RAL-820 206 chr2L 13977793 13977820 chr2L 13978116 13978148 6 327 0.5 0.0 0.2 5.0 355 chr2L 13977793 exon Cyp28a5 + chr2L 13977970 intron Cyp28a5 + chr2L 13978148 intron Cyp28a5 + chr2L_6_13975001 chr2L_13975001 RAL-820 207 chr2L 13988282 13988388 chr2L 13988369 13988469 11 85 0.0 0.0 0.0 11.0 187 chr2L 13988282 intron rk - chr2L 13988376 intron rk - chr2L 13988469 intron rk - chr2L_11_13985001 chr2L_13985001 RAL-820 208 chr2L 14190142 14190176 chr2L 14190718 14190751 11 574 3.5 3.0 3.2 2.6 609 chr2L 14190142 intron Dyrk2 - chr2L 14190446 intron Dyrk2 - chr2L 14190751 intron Dyrk2 - chr2L_11_14190001 chr2L_14190001 RAL-820 209 chr2L 14233260 14233291 chr2L 14233412 14233443 13 152 0.5 2.5 1.5 5.2 183 chr2L 14233260 intron Dyrk2 - chr2L 14233352 intron Dyrk2 - chr2L 14233443 intron Dyrk2 - chr2L_13_14230001 chr2L_14230001 RAL-820 210 chr2L 14465588 14465614 chr2L 14469051 14469077 hopper2 5 3463 1.5 1.0 1.2 2.3 3489 chr2L 14465588 intergenic not near genes chr2L 14467332 intergenic not near genes chr2L 14469077 intergenic not near genes chr2L_5_14465001 chr2L_14465001 RAL-820 211 chr2L 14514369 14514405 chr2L 14514445 14514481 11 75 3.0 3.5 3.2 2.6 112 chr2L 14514369 intergenic not near genes chr2L 14514425 intergenic not near genes chr2L 14514481 intergenic not near genes chr2L_11_14510001 chr2L_14510001 RAL-820 212 chr2L 14564195 14564219 chr2L 14564271 14564295 5 76 1.0 2.5 1.8 1.8 100 chr2L 14564195 intergenic CG3473 - chr2L 14564245 intergenic not near genes chr2L 14564295 intergenic not near genes chr2L_5_14560001 chr2L_14560001 RAL-820 213 chr2L 14565869 14565902 chr2L 14565952 14565984 5 80 1.0 1.5 1.2 2.3 115 chr2L 14565869 intergenic not near genes chr2L 14565926 intergenic not near genes chr2L 14565984 intergenic not near genes chr2L_5_14565001 chr2L_14565001 RAL-820 214 chr2L 14588382 14588411 chr2L 14588536 14588565 6 154 1.5 1.0 1.2 2.7 183 chr2L 14588382 intergenic CG42680 - chr2L 14588474 intergenic CG42680 - chr2L 14588565 intergenic CG42680 - chr2L_6_14585001 chr2L_14585001 RAL-820 215 chr2L 14803883 14803906 chr2L 14809084 14809109 copia 9 5202 2.0 1.5 1.8 3.2 5226 chr2L 14803883 intergenic not near genes chr2L 14806496 intergenic not near genes chr2L 14809109 intergenic not near genes chr2L_9_14805001 chr2L_14805001 RAL-820 216 chr2L 14839758 14839767 chr2L 14839834 14839842 6 75 2.0 1.0 1.5 2.4 84 chr2L 14839758 intergenic not near genes chr2L 14839800 intergenic not near genes chr2L 14839842 intergenic not near genes chr2L_6_14835001 chr2L_14835001 RAL-820 217 chr2L 14840981 14841010 chr2L 14841068 14841097 4 87 1.5 3.0 2.2 1.2 116 chr2L 14840981 3` UTR CR43805 - chr2L 14841039 3` UTR CR43805 - chr2L 14841097 3` UTR CR43805 - chr2L_4_14840001 chr2L_14840001 RAL-820 218 chr2L 14849278 14849301 chr2L 14849368 14849391 5 90 3.0 0.5 1.8 1.8 113 chr2L 14849278 intron CG15279 - chr2L 14849334 intron CG15279 - chr2L 14849391 intron CG15279 - chr2L_5_14845001 chr2L_14845001 RAL-820 219 chr2L 14889963 14889985 chr2L 14890388 14890410 jockey 4 425 5.0 1.5 3.2 1.0 447 chr2L 14889963 intergenic not near genes chr2L 14890186 intergenic not near genes chr2L 14890410 intergenic not near genes chr2L_4_14890001 chr2L_14890001 RAL-820 220 chr2L 14973258 14973279 chr2L 14973352 14973373 4 95 1.0 2.5 1.8 1.4 115 chr2L 14973258 intergenic not near genes chr2L 14973316 intergenic not near genes chr2L 14973373 intergenic not near genes chr2L_4_14970001 chr2L_14970001 RAL-820 221 chr2L 14984379 14984403 chr2L 14991978 14992003 opus 4 7600 0.5 0.0 0.2 3.3 7624 chr2L 14984379 intron mol - chr2L 14988191 intron mol - chr2L 14992003 intron mol - chr2L_4_14985001 chr2L_14985001 RAL-820 222 chr2L 15044711 15044723 chr2L 15044787 15044799 4 76 0.5 0.0 0.2 3.3 88 chr2L 15044711 intergenic ck - chr2L 15044755 intergenic ck - chr2L 15044799 intergenic ck - chr2L_4_15040001 chr2L_15040001 RAL-820 223 chr2L 15113068 15113097 chr2L 15113150 15113179 4 82 0.5 1.5 1.0 2.0 111 chr2L 15113068 3` UTR CG15269 + chr2L 15113124 intergenic CG15269 +,stc + chr2L 15113179 intergenic CG15269 +,stc + chr2L_4_15110001 chr2L_15110001 RAL-820 224 chr2L 15121752 15121784 chr2L 15121867 15121871 5 108 1.0 1.0 1.0 2.5 119 chr2L 15121752 intergenic not near genes chr2L 15121812 intergenic not near genes chr2L 15121871 intergenic not near genes chr2L_5_15120001 chr2L_15120001 RAL-820 225 chr2L 15354929 15354955 chr2L 15355018 15355044 5 89 2.5 3.0 2.8 1.3 115 chr2L 15354929 intergenic not near genes chr2L 15354986 intergenic not near genes chr2L 15355044 intergenic not near genes chr2L_5_15350001 chr2L_15350001 RAL-820 226 chr2L 15409309 15409322 chr2L 15409387 15409400 4 78 0.0 2.5 1.2 1.8 91 chr2L 15409309 intergenic not near genes chr2L 15409354 intergenic not near genes chr2L 15409400 intergenic not near genes chr2L_4_15405001 chr2L_15405001 RAL-820 227 chr2L 15482581 15482597 chr2L 15482716 15482733 7 135 1.5 1.5 1.5 2.8 152 chr2L 15482581 intergenic not near genes chr2L 15482657 intergenic not near genes chr2L 15482733 intergenic not near genes chr2L_7_15480001 chr2L_15480001 RAL-820 228 chr2L 15852045 15852077 chr2L 15852129 15852161 8 84 1.0 5.0 3.0 2.0 116 chr2L 15852045 intergenic not near genes chr2L 15852103 intergenic CG13243 + chr2L 15852161 intergenic CG13243 + chr2L_8_15850001 chr2L_15850001 RAL-820 229 chr2L 15948929 15948943 chr2L 15949030 15949043 4 100 1.0 2.0 1.5 1.6 114 chr2L 15948929 intron beat-Ib - chr2L 15948986 intron beat-Ib - chr2L 15949043 intron beat-Ib - chr2L_4_15945001 chr2L_15945001 RAL-820 230 chr2L 15956024 15956044 chr2L 15957491 15957511 hobo 5 1467 3.5 1.5 2.5 1.4 1487 chr2L 15956024 intron beat-Ib - chr2L 15956768 intron beat-Ib - chr2L 15957511 intron beat-Ib - chr2L_5_15955001 chr2L_15955001 RAL-820 231 chr2L 15996510 15996529 chr2L 15996594 15996613 7 84 2.0 2.0 2.0 2.3 103 chr2L 15996510 intergenic not near genes chr2L 15996562 intergenic not near genes chr2L 15996613 intergenic not near genes chr2L_7_15995001 chr2L_15995001 RAL-820 232 chr2L 16043569 16043589 chr2L 16043654 16043673 4 85 0.0 1.5 0.8 2.2 104 chr2L 16043569 intron,intron BicC +,CG45084 + chr2L 16043621 intron,intron BicC +,CG45084 + chr2L 16043673 intron,intron BicC +,CG45084 + chr2L_4_16040001 chr2L_16040001 RAL-820 233 chr2L 16065960 16065977 chr2L 16066047 16066066 4 88 1.0 1.5 1.2 1.8 106 chr2L 16065960 intron beat-Ia + chr2L 16066013 intron beat-Ia + chr2L 16066066 intron beat-Ia + chr2L_4_16065001 chr2L_16065001 RAL-820 234 chr2L 16071771 16071771 chr2L 16217659 16217660 copia 16 145889 9.0 12.5 10.8 1.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_16_16140001 chr2L_16140001 RAL-820 235 chr2L 16153746 16153760 chr2L 16160813 16160828 297 8 7068 3.5 1.0 2.2 2.5 7082 chr2L 16153746 intergenic not near genes chr2L 16157287 intergenic not near genes chr2L 16160828 intergenic not near genes chr2L_8_16155001 chr2L_16155001 RAL-820 236 chr2L 9084338 9084340 chr2L 16217660 16217660 10 7133321 7.0 13.0 10.0 0.9 7133322 chr2L 9084338 intron Toll-4 + chr2L 12650999 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_12650001 chr2L_12650001 RAL-820 237 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 7 145889 9.0 13.0 11.0 0.6 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-820 238 chr2L 16226184 16226213 chr2L 16226271 16226299 6 87 3.0 3.0 3.0 1.5 115 chr2L 16226184 intergenic not near genes chr2L 16226242 intergenic not near genes chr2L 16226299 intergenic not near genes chr2L_6_16225001 chr2L_16225001 RAL-820 239 chr2L 16280255 16280286 chr2L 16281423 16281454 1360 8 1167 4.0 5.5 4.8 1.4 1199 chr2L 16280255 intron crp - chr2L 16280854 intron crp - chr2L 16281454 intron crp - chr2L_8_16280001 chr2L_16280001 RAL-820 240 chr2L 16354776 16354781 chr2L 16354866 16354873 4 91 1.0 2.0 1.5 1.6 97 chr2L 16354776 intergenic CaBP1 -,CG4455 + chr2L 16354824 intergenic CaBP1 -,CG4455 + chr2L 16354873 intergenic CaBP1 -,CG4455 + chr2L_4_16350001 chr2L_16350001 RAL-820 241 chr2L 16394914 16394942 chr2L 16395000 16395026 5 85 0.0 1.0 0.5 3.3 112 chr2L 16394914 intergenic not near genes chr2L 16394970 intergenic not near genes chr2L 16395026 intergenic not near genes chr2L_5_16390001 chr2L_16390001 RAL-820 242 chr2L 16467912 16467921 chr2L 16468000 16468009 4 88 1.5 1.5 1.5 1.6 97 chr2L 16467912 intron dac - chr2L 16467960 intron dac - chr2L 16468009 intron dac - chr2L_4_16465001 chr2L_16465001 RAL-820 243 chr2L 16511966 16511976 chr2L 16519080 16519090 HMS-Beagle 4 7114 4.5 3.0 3.8 0.8 7124 chr2L 16511966 intron CG5953 - chr2L 16515528 intron CG5953 - chr2L 16519090 intron CG5953 - chr2L_4_16515001 chr2L_16515001 RAL-820 244 chr2L 16583099 16583114 chr2L 16583186 16583202 5 87 0.5 1.0 0.8 2.8 103 chr2L 16583099 intron CG42389 + chr2L 16583150 intron CG42389 + chr2L 16583202 intron CG42389 + chr2L_5_16580001 chr2L_16580001 RAL-820 245 chr2L 16695264 16695292 chr2L 16695348 16695376 5 83 2.0 1.5 1.8 1.8 112 chr2L 16695264 intron grp + chr2L 16695320 intron grp + chr2L 16695376 intron grp + chr2L_5_16695001 chr2L_16695001 RAL-820 246 chr2L 16721438 16721470 chr2L 16721530 16721562 6 92 1.0 0.0 0.5 4.0 124 chr2L 16721438 intron Cyt-c-p + chr2L 16721500 intron Cyt-c-p + chr2L 16721562 intron Cyt-c-p + chr2L_6_16720001 chr2L_16720001 RAL-820 247 chr2L 16764971 16765000 chr2L 16765051 16765080 5 80 1.5 0.5 1.0 2.5 109 chr2L 16764971 intergenic not near genes chr2L 16765026 intergenic not near genes chr2L 16765080 intergenic not near genes chr2L_5_16765001 chr2L_16765001 RAL-820 248 chr2L 16920017 16920038 chr2L 16920095 16920117 8 78 2.5 2.5 2.5 2.3 100 chr2L 16920017 intergenic not near genes chr2L 16920067 intergenic not near genes chr2L 16920117 intergenic not near genes chr2L_8_16920001 chr2L_16920001 RAL-820 249 chr2L 16949613 16949634 chr2L 16949697 16949718 4 84 1.5 1.0 1.2 1.8 105 chr2L 16949613 intron CR44393 - chr2L 16949666 intron CR44393 - chr2L 16949718 intron CR44393 - chr2L_4_16945001 chr2L_16945001 RAL-820 250 chr2L 17032504 17032515 chr2L 17032589 17032600 4 85 1.5 0.5 1.0 2.0 96 chr2L 17032504 intergenic not near genes chr2L 17032552 intergenic not near genes chr2L 17032600 intergenic not near genes chr2L_4_17030001 chr2L_17030001 RAL-820 251 chr2L 17033914 17033945 chr2L 17034000 17034031 4 86 2.5 3.0 2.8 1.1 117 chr2L 17033914 intergenic not near genes chr2L 17033972 intergenic not near genes chr2L 17034031 intergenic not near genes chr2L_4_17030001 chr2L_17030001 RAL-820 252 chr2L 17052413 17052437 chr2L 17052525 17052549 4 112 2.0 3.0 2.5 1.1 136 chr2L 17052413 intergenic not near genes chr2L 17052481 intergenic not near genes chr2L 17052549 intergenic not near genes chr2L_4_17050001 chr2L_17050001 RAL-820 253 chr2L 17062755 17062791 chr2L 17062837 17062873 5 82 0.0 1.0 0.5 3.3 118 chr2L 17062755 intergenic not near genes chr2L 17062814 intergenic not near genes chr2L 17062873 intergenic not near genes chr2L_5_17060001 chr2L_17060001 RAL-820 254 chr2L 17120861 17120872 chr2L 17120940 17120951 4 79 1.0 5.0 3.0 1.0 90 chr2L 17120861 intergenic not near genes chr2L 17120906 intergenic not near genes chr2L 17120951 intergenic not near genes chr2L_4_17120001 chr2L_17120001 RAL-820 255 chr2L 17167569 17167591 chr2L 17167810 17167832 pogo 4 241 3.5 0.5 2.0 1.3 263 chr2L 17167569 intron,intron CG34106 +,beat-IIIa + chr2L 17167700 intron,intron CG34106 +,beat-IIIa + chr2L 17167832 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-820 256 chr2L 17199162 17199192 chr2L 17200628 17200659 hobo 4 1466 1.5 1.5 1.5 1.6 1497 chr2L 17199162 intron beat-IIIc - chr2L 17199910 intron beat-IIIc - chr2L 17200659 intron beat-IIIc - chr2L_4_17195001 chr2L_17195001 RAL-820 257 chr2L 17204048 17204072 chr2L 17204124 17204149 5 77 2.5 3.0 2.8 1.3 101 chr2L 17204048 intron beat-IIIc - chr2L 17204098 intron beat-IIIc - chr2L 17204149 intron beat-IIIc - chr2L_5_17200001 chr2L_17200001 RAL-820 258 chr2L 17273188 17273225 chr2L 17277971 17278008 F-element 6 4783 1.0 1.5 1.2 2.7 4820 chr2L 17273188 intergenic not near genes chr2L 17275598 intergenic not near genes chr2L 17278008 intergenic not near genes chr2L_6_17275001 chr2L_17275001 RAL-820 259 chr2L 17432016 17432049 chr2L 17432123 17432156 1360 5 107 0.0 0.0 0.0 5.0 140 chr2L 17432016 intron Dif - chr2L 17432086 intron Dif - chr2L 17432156 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-820 260 chr2L 17543596 17543620 chr2L 17543689 17543712 5 93 1.0 2.0 1.5 2.0 116 chr2L 17543596 intergenic not near genes chr2L 17543654 intergenic not near genes chr2L 17543712 intergenic not near genes chr2L_5_17540001 chr2L_17540001 RAL-820 261 chr2L 17562938 17562960 chr2L 17563017 17563035 4 78 1.0 3.0 2.0 1.3 97 chr2L 17562938 intergenic not near genes chr2L 17562986 intergenic not near genes chr2L 17563035 intergenic not near genes chr2L_4_17560001 chr2L_17560001 RAL-820 262 chr2L 17580897 17580928 chr2L 17581751 17581782 8 854 0.5 0.5 0.5 5.3 885 chr2L 17580897 intergenic not near genes chr2L 17581340 intergenic not near genes chr2L 17581782 intergenic not near genes chr2L_8_17580001 chr2L_17580001 RAL-820 263 chr2L 17640791 17640802 chr2L 17640870 17640882 4 78 1.5 3.0 2.2 1.2 91 chr2L 17640791 intergenic not near genes chr2L 17640836 intergenic not near genes chr2L 17640882 intergenic not near genes chr2L_4_17640001 chr2L_17640001 RAL-820 264 chr2L 17680998 17681025 chr2L 17681074 17681101 4 76 0.0 0.0 0.0 4.0 103 chr2L 17680998 intron CadN - chr2L 17681050 intron CadN - chr2L 17681101 intron CadN - chr2L_4_17680001 chr2L_17680001 RAL-820 265 chr2L 17747995 17748027 chr2L 17748070 17748103 9 76 1.5 1.5 1.5 3.6 108 chr2L 17747995 intron CadN - chr2L 17748049 intron CadN - chr2L 17748103 intron CadN - chr2L_9_17745001 chr2L_17745001 RAL-820 266 chr2L 17796030 17796039 chr2L 17796111 17796120 5 81 2.0 1.5 1.8 1.8 90 chr2L 17796030 intron CadN2 - chr2L 17796075 intron CadN2 - chr2L 17796120 intron CadN2 - chr2L_5_17795001 chr2L_17795001 RAL-820 267 chr2L 17819921 17819934 chr2L 17825125 17825138 copia 5 5204 2.5 1.5 2.0 1.7 5217 chr2L 17819921 intron CadN2 - chr2L 17822530 intron CadN2 - chr2L 17825138 intron CadN2 - chr2L_5_17820001 chr2L_17820001 RAL-820 268 chr2L 17880021 17880031 chr2L 17880108 17880118 4 87 0.5 6.0 3.2 1.0 97 chr2L 17880021 intergenic not near genes chr2L 17880070 intergenic not near genes chr2L 17880118 intergenic not near genes chr2L_4_17880001 chr2L_17880001 RAL-820 269 chr2L 17951943 17951980 chr2L 17953410 17953447 hobo 6 1467 2.5 2.5 2.5 1.7 1504 chr2L 17951943 intergenic CR44398 -,CR44397 - chr2L 17952695 intergenic not near genes chr2L 17953447 intergenic not near genes chr2L_6_17950001 chr2L_17950001 RAL-820 270 chr2L 18051876 18051909 chr2L 18061023 18061056 roo 8 9145 1.5 2.0 1.8 2.9 9180 chr2L 18051876 intron rdo + chr2L 18056466 intron rdo + chr2L 18061056 intron rdo + chr2L_8_18055001 chr2L_18055001 RAL-820 271 chr2L 18235079 18235090 chr2L 18235191 18235222 4 127 1.5 1.5 1.5 1.6 143 chr2L 18235079 intron CG42750 - chr2L 18235150 intron CG42750 - chr2L 18235222 intron CG42750 - chr2L_4_18235001 chr2L_18235001 RAL-820 272 chr2L 18315251 18315279 chr2L 18315331 18315359 14 78 2.0 4.0 3.0 3.5 108 chr2L 18315251 intergenic not near genes chr2L 18315305 intergenic not near genes chr2L 18315359 intergenic not near genes chr2L_14_18315001 chr2L_18315001 RAL-820 273 chr2L 18423860 18423872 chr2L 18423949 18423963 4 90 1.0 1.0 1.0 2.0 103 chr2L 18423860 intergenic not near genes chr2L 18423912 intergenic not near genes chr2L 18423963 intergenic not near genes chr2L_4_18420001 chr2L_18420001 RAL-820 274 chr2L 18496693 18496715 chr2L 18496774 18496797 9 82 0.0 2.0 1.0 4.5 104 chr2L 18496693 intron kon - chr2L 18496745 intron kon - chr2L 18496797 intron kon - chr2L_9_18495001 chr2L_18495001 RAL-820 275 chr2L 16217660 16217660 chr2L 18622713 18622719 12 2405058 13.0 9.5 11.2 1.0 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_12_17420001 chr2L_17420001 RAL-820 276 chr2L 18671998 18672009 chr2L 18672081 18672092 7 83 6.0 4.5 5.2 1.1 94 chr2L 18671998 exon CG43339 - chr2L 18672045 exon CG43339 - chr2L 18672092 exon CG43339 - chr2L_7_18670001 chr2L_18670001 RAL-820 277 chr2L 18759516 18759532 chr2L 18759594 18759608 4 77 4.0 0.0 2.0 1.3 92 chr2L 18759516 intergenic not near genes chr2L 18759562 intergenic not near genes chr2L 18759608 intergenic not near genes chr2L_4_18755001 chr2L_18755001 RAL-820 278 chr2L 18791076 18791100 chr2L 18791155 18791179 5 78 2.5 0.0 1.2 2.3 103 chr2L 18791076 intron ham - chr2L 18791128 intron ham - chr2L 18791179 intron ham - chr2L_5_18790001 chr2L_18790001 RAL-820 279 chr2L 18812558 18812584 chr2L 18812821 18812847 4 263 1.5 1.5 1.5 1.6 289 chr2L 18812558 intergenic CG17325 +,CG42305 + chr2L 18812702 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812847 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_4_18810001 chr2L_18810001 RAL-820 280 chr2L 18866258 18866278 chr2L 18866679 18866705 4 425 3.0 2.5 2.8 1.1 447 chr2L 18866258 intron tup - chr2L 18866482 intron tup - chr2L 18866705 intron tup - chr2L_4_18865001 chr2L_18865001 RAL-820 281 chr2L 18898403 18898423 chr2L 18898485 18898505 4 82 2.5 1.0 1.8 1.4 102 chr2L 18898403 intergenic not near genes chr2L 18898454 intergenic not near genes chr2L 18898505 intergenic not near genes chr2L_4_18895001 chr2L_18895001 RAL-820 282 chr2L 19024096 19024097 chr2L 21768291 21768291 4 2744196 9.5 16.5 13.0 0.3 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_4_20395001 chr2L_20395001 RAL-820 283 chr2L 19071178 19071207 chr2L 19077360 19077389 5 6183 13.0 16.0 14.5 0.3 6211 chr2L 19071178 3` UTR CG17572 - chr2L 19074284 intergenic CG17572 - chr2L 19077389 exon CG10700 - chr2L_5_19070001 chr2L_19070001 RAL-820 284 chr2L 19163374 19163396 chr2L 19163455 19163477 6 81 3.5 6.0 4.8 1.0 103 chr2L 19163374 intron brat + chr2L 19163426 intron brat + chr2L 19163477 intron brat + chr2L_6_19160001 chr2L_19160001 RAL-820 285 chr2L 19189724 19189750 chr2L 19189802 19189828 5 78 2.5 0.5 1.5 2.0 104 chr2L 19189724 3` UTR pigeon + chr2L 19189776 3` UTR pigeon + chr2L 19189828 3` UTR pigeon + chr2L_5_19185001 chr2L_19185001 RAL-820 286 chr2L 19189973 19190004 chr2L 19190127 19190157 7 154 1.0 2.5 1.8 2.5 184 chr2L 19189973 intergenic pigeon +,drl + chr2L 19190065 intergenic pigeon +,drl + chr2L 19190157 intergenic drl +,pigeon + chr2L_7_19190001 chr2L_19190001 RAL-820 287 chr2L 19199673 19199687 chr2L 19199750 19199764 7 76 3.5 2.5 3.0 1.8 91 chr2L 19199673 intron drl + chr2L 19199718 intron drl + chr2L 19199764 intron drl + chr2L_7_19195001 chr2L_19195001 RAL-820 288 chr2L 19199689 19199707 chr2L 19199747 19199784 9 74 2.5 2.5 2.5 2.6 95 chr2L 19199689 intron drl + chr2L 19199736 intron drl + chr2L 19199784 intron drl + chr2L_9_19195001 chr2L_19195001 RAL-820 289 chr2L 19286876 19286896 chr2L 19286977 19286997 9 101 2.0 0.5 1.2 4.1 121 chr2L 19286876 intergenic not near genes chr2L 19286936 intergenic not near genes chr2L 19286997 intergenic not near genes chr2L_9_19285001 chr2L_19285001 RAL-820 290 chr2L 19317996 19318007 chr2L 19318074 19318085 4 78 0.5 4.5 2.5 1.1 89 chr2L 19317996 intergenic not near genes chr2L 19318040 intergenic not near genes chr2L 19318085 intergenic not near genes chr2L_4_19315001 chr2L_19315001 RAL-820 291 chr2L 19345021 19345045 chr2L 19357227 19357253 blood 4 12208 2.0 5.0 3.5 0.9 12232 chr2L 19345021 intron dnt - chr2L 19351137 intron dnt - chr2L 19357253 intron dnt - chr2L_4_19350001 chr2L_19350001 RAL-820 292 chr2L 19357545 19357568 chr2L 19357635 19357658 8 90 1.0 2.0 1.5 3.2 113 chr2L 19357545 intron dnt - chr2L 19357602 intron dnt - chr2L 19357658 intron dnt - chr2L_8_19355001 chr2L_19355001 RAL-820 293 chr2L 19560834 19560864 chr2L 19560914 19560944 5 80 2.0 0.0 1.0 2.5 110 chr2L 19560834 intron Tep5 + chr2L 19560889 exon Tep5 + chr2L 19560944 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-820 294 chr2L 19561355 19561371 chr2L 19561495 19561512 5 141 2.0 1.0 1.5 2.0 157 chr2L 19561355 exon Tep5 + chr2L 19561434 exon Tep5 + chr2L 19561512 exon Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-820 295 chr2L 19562544 19562553 chr2L 19562623 19562632 4 78 0.0 3.0 1.5 1.6 88 chr2L 19562544 intron Tep5 + chr2L 19562588 intron Tep5 + chr2L 19562632 exon Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-820 296 chr2L 19620096 19620131 chr2L 19621083 19621120 jockey 7 989 2.0 2.5 2.2 2.2 1024 chr2L 19620096 intron Lar + chr2L 19620608 intron Lar + chr2L 19621120 intron Lar + chr2L_7_19620001 chr2L_19620001 RAL-820 297 chr2L 19652577 19652602 chr2L 19674011 19674036 opus 6 21434 1.0 0.5 0.8 3.3 21459 chr2L 19652577 intron Lar + chr2L 19663306 intron Lar + chr2L 19674036 intron Lar + chr2L_6_19660001 chr2L_19660001 RAL-820 298 chr2L 19703539 19703568 chr2L 19712673 19712703 roo 7 9136 4.5 3.5 4.0 1.4 9164 chr2L 19703539 intron Lar + chr2L 19708121 intron Lar + chr2L 19712703 intron Lar + chr2L_7_19705001 chr2L_19705001 RAL-820 299 chr2L 19737357 19737387 chr2L 19740825 19740856 1360 6 3466 1.0 3.0 2.0 2.0 3499 chr2L 19737357 intergenic Nf-YB + chr2L 19739106 intergenic not near genes chr2L 19740856 intergenic not near genes chr2L_6_19735001 chr2L_19735001 RAL-820 300 chr2L 19762807 19762837 chr2L 19763050 19763078 pogo 8 242 2.5 1.5 2.0 2.7 271 chr2L 19762807 5` UTR fbp - chr2L 19762942 intron fbp - chr2L 19763078 intron fbp - chr2L_8_19760001 chr2L_19760001 RAL-820 301 chr2L 19790018 19790040 chr2L 19790095 19790117 7 77 2.5 4.0 3.2 1.7 99 chr2L 19790018 intron CdGAPr - chr2L 19790068 intron CdGAPr - chr2L 19790117 intron CdGAPr - chr2L_7_19790001 chr2L_19790001 RAL-820 302 chr2L 19837277 19837309 chr2L 19837357 19837389 10 80 4.5 0.5 2.5 2.9 112 chr2L 19837277 intron sick + chr2L 19837333 intron sick + chr2L 19837389 intron sick + chr2L_10_19835001 chr2L_19835001 RAL-820 303 chr2L 19846246 19846277 chr2L 19846327 19846357 9 81 0.5 2.0 1.2 4.1 111 chr2L 19846246 intron sick + chr2L 19846302 intron sick + chr2L 19846357 intron sick + chr2L_9_19845001 chr2L_19845001 RAL-820 304 chr2L 19873987 19874020 chr2L 19874064 19874097 6 76 0.5 1.5 1.0 3.0 110 chr2L 19873987 intron sick + chr2L 19874042 intron sick + chr2L 19874097 intron sick + chr2L_6_19870001 chr2L_19870001 RAL-820 305 chr2L 19994651 19994680 chr2L 19994731 19994760 5 77 4.0 3.0 3.5 1.1 109 chr2L 19994651 intron CG43861 - chr2L 19994706 intron CG43861 - chr2L 19994760 intron CG43861 - chr2L_5_19990001 chr2L_19990001 RAL-820 306 chr2L 20000053 20000076 chr2L 20000142 20000165 4 89 2.5 1.5 2.0 1.3 112 chr2L 20000053 intron CG43861 - chr2L 20000109 intron CG43861 - chr2L 20000165 intron,3` UTR CG43861 -,CR44908 - chr2L_4_20000001 chr2L_20000001 RAL-820 307 chr2L 20022091 20022103 chr2L 20022204 20022216 4 113 1.5 1.5 1.5 1.6 125 chr2L 20022091 intergenic not near genes chr2L 20022154 intergenic not near genes chr2L 20022216 intergenic not near genes chr2L_4_20020001 chr2L_20020001 RAL-820 308 chr2L 20124327 20124357 chr2L 20124405 20124435 4 78 4.5 1.0 2.8 1.1 108 chr2L 20124327 intergenic not near genes chr2L 20124381 intergenic not near genes chr2L 20124435 intergenic not near genes chr2L_4_20120001 chr2L_20120001 RAL-820 309 chr2L 20272118 20272141 chr2L 20282829 20282852 copia 4 10711 3.0 6.5 4.8 0.7 10734 chr2L 20272118 intergenic not near genes chr2L 20277485 intergenic not near genes chr2L 20282852 intergenic not near genes chr2L_4_20275001 chr2L_20275001 RAL-820 310 chr2L 20294300 20294312 chr2L 20294389 20294401 4 88 2.5 2.0 2.2 1.2 101 chr2L 20294300 intergenic CG12617 + chr2L 20294350 intergenic CG12617 + chr2L 20294401 intergenic CG12617 + chr2L_4_20290001 chr2L_20290001 RAL-820 311 chr2L 20296510 20296531 chr2L 20296591 20296593 8 78 2.0 1.5 1.8 2.9 83 chr2L 20296510 intergenic CR43414 - chr2L 20296552 intergenic CR43414 - chr2L 20296593 intergenic CR43414 - chr2L_8_20295001 chr2L_20295001 RAL-820 312 chr2L 20303165 20303182 chr2L 20310633 20310650 blood 6 7468 0.0 0.5 0.2 5.0 7485 chr2L 20303165 intergenic not near genes chr2L 20306908 intergenic not near genes chr2L 20310650 intergenic not near genes chr2L_6_20305001 chr2L_20305001 RAL-820 313 chr2L 20310879 20310922 chr2L 20310958 20311001 4 79 2.0 2.5 2.2 1.2 122 chr2L 20310879 intergenic spir + chr2L 20310940 intergenic spir + chr2L 20311001 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-820 314 chr2L 20317785 20317795 chr2L 20317869 20317879 4 84 1.5 3.0 2.2 1.2 94 chr2L 20317785 intron spir + chr2L 20317832 intron spir + chr2L 20317879 intron spir + chr2L_4_20315001 chr2L_20315001 RAL-820 315 chr2L 20344098 20344132 chr2L 20344186 20344220 6 88 2.5 0.5 1.5 2.4 122 chr2L 20344098 intron spir + chr2L 20344159 intron spir + chr2L 20344220 intron spir + chr2L_6_20340001 chr2L_20340001 RAL-820 316 chr2L 20369419 20369448 chr2L 20369636 20369665 8 217 1.5 4.0 2.8 2.1 246 chr2L 20369419 intergenic not near genes chr2L 20369542 intergenic not near genes chr2L 20369665 intergenic not near genes chr2L_8_20365001 chr2L_20365001 RAL-820 317 chr2L 20372222 20372256 chr2L 20372472 20372497 pogo 5 246 0.5 1.5 1.0 2.5 275 chr2L 20372222 intergenic Ugt37a1 - chr2L 20372360 intergenic Ugt37a1 - chr2L 20372497 exon Ugt37a1 - chr2L_5_20370001 chr2L_20370001 RAL-820 318 chr2L 20389332 20389350 chr2L 20389413 20389430 8 80 0.5 1.0 0.8 4.4 98 chr2L 20389332 intron CG10947 - chr2L 20389381 intron CG10947 - chr2L 20389430 intron CG10947 - chr2L_8_20385001 chr2L_20385001 RAL-820 319 chr2L 20549135 20549155 chr2L 20549217 20549236 6 81 3.5 3.0 3.2 1.4 101 chr2L 20549135 intergenic not near genes chr2L 20549186 intergenic not near genes chr2L 20549236 intergenic not near genes chr2L_6_20545001 chr2L_20545001 RAL-820 320 chr2L 20553186 20553204 chr2L 20553261 20553280 8 76 5.5 4.0 4.8 1.4 94 chr2L 20553186 intergenic not near genes chr2L 20553233 intergenic not near genes chr2L 20553280 intergenic not near genes chr2L_8_20550001 chr2L_20550001 RAL-820 321 chr2L 20567335 20567367 chr2L 20567465 20567499 8 132 1.5 1.5 1.5 3.2 164 chr2L 20567335 intron CR45347 + chr2L 20567417 intron CR45347 + chr2L 20567499 intron CR45347 + chr2L_8_20565001 chr2L_20565001 RAL-820 322 chr2L 20568665 20568683 chr2L 20569055 20569071 X-element 5 390 2.0 5.0 3.5 1.1 406 chr2L 20568665 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569071 intron CR45347 + chr2L_5_20565001 chr2L_20565001 RAL-820 323 chr2L 20576218 20576244 chr2L 20583686 20583712 blood 9 7468 2.5 2.0 2.2 2.8 7494 chr2L 20576218 intergenic CR45347 + chr2L 20579965 intergenic not near genes chr2L 20583712 3` UTR CR44909 - chr2L_9_20575001 chr2L_20575001 RAL-820 324 chr2L 20607639 20607669 chr2L 20607718 20607747 8 78 2.5 2.5 2.5 2.3 108 chr2L 20607639 intron,3` UTR CR44909 -,CR43608 - chr2L 20607693 intron,3` UTR CR44909 -,CR43608 - chr2L 20607747 intron,3` UTR CR44909 -,CR43608 - chr2L_8_20605001 chr2L_20605001 RAL-820 325 chr2L 20648181 20648186 chr2L 20648359 20648364 6 178 19.5 1.5 10.5 0.5 183 chr2L 20648181 intron Uhg3 + chr2L 20648272 5` UTR Uhg3 + chr2L 20648364 5` UTR Uhg3 + chr2L_6_20645001 chr2L_20645001 RAL-820 326 chr2L 20835819 20835841 chr2L 20836534 20836558 Quasimodo 4 716 2.0 2.0 2.0 1.3 739 chr2L 20835819 5` UTR Oseg5 - chr2L 20836188 intergenic Oseg5 -,Spn38F - chr2L 20836558 intergenic Spn38F - chr2L_4_20835001 chr2L_20835001 RAL-820 327 chr2L 20840031 20840052 chr2L 20840242 20840255 10 211 3.5 4.0 3.8 2.1 224 chr2L 20840031 intergenic not near genes chr2L 20840143 intergenic not near genes chr2L 20840255 intergenic CG31676 + chr2L_10_20840001 chr2L_20840001 RAL-820 328 chr2L 20901473 20901489 chr2L 20902637 20902653 1360 7 1164 1.0 4.5 2.8 1.8 1180 chr2L 20901473 intron,intron CG43739 -,sky - chr2L 20902063 intron,intron CG43739 -,sky - chr2L 20902653 intron,intron CG43739 -,sky - chr2L_7_20900001 chr2L_20900001 RAL-820 329 chr2L 20976642 20976672 chr2L 20981457 20981487 X-element 5 4815 2.5 2.0 2.2 1.6 4845 chr2L 20976642 intron CG42238 - chr2L 20979064 intron CG42238 - chr2L 20981487 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-820 330 chr2L 20984740 20984769 chr2L 20984832 20984860 5 92 2.5 2.0 2.2 1.6 120 chr2L 20984740 intron CG42238 - chr2L 20984800 intron CG42238 - chr2L 20984860 intron CG42238 - chr2L_5_20980001 chr2L_20980001 RAL-820 331 chr2L 20991037 20991061 chr2L 20991114 20991139 8 78 0.5 1.5 1.0 4.0 102 chr2L 20991037 intron CG42238 - chr2L 20991088 intron CG42238 - chr2L 20991139 intron CG42238 - chr2L_8_20990001 chr2L_20990001 RAL-820 332 chr2L 21012081 21012092 chr2L 21012174 21012185 5 92 6.5 3.0 4.8 0.9 104 chr2L 21012081 intron CG42238 - chr2L 21012133 intron CG42238 - chr2L 21012185 intron CG42238 - chr2L_5_21010001 chr2L_21010001 RAL-820 333 chr2L 21020278 21020309 chr2L 21023953 21023986 NOF 9 3676 1.5 2.0 1.8 3.2 3708 chr2L 21020278 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_9_21020001 chr2L_21020001 RAL-820 334 chr2L 21066480 21066502 chr2L 21066562 21066586 7 84 2.5 2.0 2.2 2.2 106 chr2L 21066480 intron CG9265 - chr2L 21066533 intron CG9265 - chr2L 21066586 intron CG9265 - chr2L_7_21065001 chr2L_21065001 RAL-820 335 chr2L 21074920 21074951 chr2L 21075011 21075042 5 91 2.0 2.5 2.2 1.6 122 chr2L 21074920 intergenic tadr + chr2L 21074981 intergenic tadr + chr2L 21075042 intergenic tadr + chr2L_5_21070001 chr2L_21070001 RAL-820 336 chr2L 21154164 21154187 chr2L 21154241 21154263 7 76 0.5 1.0 0.8 3.9 99 chr2L 21154164 intergenic E2f2 - chr2L 21154214 intergenic E2f2 - chr2L 21154263 intergenic E2f2 - chr2L_7_21150001 chr2L_21150001 RAL-820 337 chr2L 21286610 21286633 chr2L 21286688 21286709 5 77 1.5 1.0 1.2 2.3 99 chr2L 21286610 exon Mio - chr2L 21286660 intron Mio - chr2L 21286709 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-820 338 chr2L 21597030 21597058 chr2L 21604773 21604802 roo 6 7744 1.0 0.0 0.5 4.0 7772 chr2L 21597030 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604802 intergenic not near genes chr2L_6_21600001 chr2L_21600001 RAL-820 339 chr2L 21630158 21630186 chr2L 21630519 21630547 8 362 1.0 2.5 1.8 2.9 389 chr2L 21630158 intergenic Df31 - chr2L 21630352 intergenic Df31 - chr2L 21630547 intergenic not near genes chr2L_8_21630001 chr2L_21630001 RAL-820 340 chr2L 21653192 21653216 chr2L 21656496 21656520 invader4 7 3304 0.0 0.5 0.2 5.8 3328 chr2L 21653192 intergenic not near genes chr2L 21654856 intergenic not near genes chr2L 21656520 intergenic not near genes chr2L_7_21650001 chr2L_21650001 RAL-820 341 chr2L 21684308 21684331 chr2L 21684569 21684594 5 262 1.0 1.0 1.0 2.5 286 chr2L 21684308 intron CG31619 + chr2L 21684451 intron CG31619 + chr2L 21684594 5` UTR CG31619 + chr2L_5_21680001 chr2L_21680001 RAL-820 342 chr2L 21685790 21685809 chr2L 21685865 21685885 7 75 0.5 1.5 1.0 3.5 95 chr2L 21685790 intron CG31619 + chr2L 21685838 intron CG31619 + chr2L 21685885 intron CG31619 + chr2L_7_21685001 chr2L_21685001 RAL-820 343 chr2L 21725940 21725956 chr2L 21726020 21726039 4 82 3.5 1.0 2.2 1.2 99 chr2L 21725940 intron CG31619 + chr2L 21725990 intron CG31619 + chr2L 21726039 intron CG31619 + chr2L_4_21725001 chr2L_21725001 RAL-820 344 chr2L 21865928 21865939 chr2L 21866530 21866541 5 602 5.0 1.5 3.2 1.2 613 chr2L 21865928 intron,3` UTR CR44917 +,CR44918 - chr2L 21866234 intron,3` UTR CR44917 +,CR44918 - chr2L 21866541 intron CR44917 + chr2L_5_21865001 chr2L_21865001 RAL-820 345 chr2L 21898842 21898878 chr2L 21898970 21899003 8 127 3.0 2.0 2.5 2.3 161 chr2L 21898842 intergenic not near genes chr2L 21898922 intergenic not near genes chr2L 21899003 intergenic not near genes chr2L_8_21895001 chr2L_21895001 RAL-820 346 chr2L 21981682 21981715 chr2L 21990847 21990880 roo 7 9165 2.0 1.5 1.8 2.5 9198 chr2L 21981682 exon CG2528 - chr2L 21986281 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_7_21985001 chr2L_21985001 RAL-820 347 chr2L 22215913 22215937 chr2L 22215999 22216023 6 86 3.0 4.0 3.5 1.3 110 chr2L 22215913 intergenic not near genes chr2L 22215968 intergenic not near genes chr2L 22216023 intergenic not near genes chr2L_6_22215001 chr2L_22215001 RAL-820 348 chr2L 22239428 22239451 chr2L 22239508 22239531 6 81 2.5 2.5 2.5 1.7 103 chr2L 22239428 3` UTR CR43765 - chr2L 22239480 3` UTR CR43765 - chr2L 22239531 3` UTR CR43765 - chr2L_6_22235001 chr2L_22235001 RAL-820 349 chr2L 22258615 22258647 chr2L 22260739 22260771 G6 13 2124 2.0 0.5 1.2 5.9 2156 chr2L 22258615 intergenic Tif-IA + chr2L 22259693 intergenic not near genes chr2L 22260771 intergenic not near genes chr2L_13_22255001 chr2L_22255001 RAL-820 350 chr2L 22548925 22548945 chr2L 22550150 22550169 1360 7 1224 0.0 2.0 1.0 3.5 1244 chr2L 22548925 intergenic CG17490 + chr2L 22549547 intergenic not near genes chr2L 22550169 intergenic CG17493 + chr2L_7_22545001 chr2L_22545001 RAL-820 351 chr2L 22581969 22581998 chr2L 22583758 22583786 S-element 5 1789 1.0 0.5 0.8 2.8 1817 chr2L 22581969 intron CG17494 + chr2L 22582878 intron CG17494 + chr2L 22583786 intron CG17494 + chr2L_5_22580001 chr2L_22580001 RAL-820 352 chr2L 22674069 22674098 chr2L 22674145 22674175 6 76 2.0 0.0 1.0 3.0 106 chr2L 22674069 intron CG40006 - chr2L 22674122 intron CG40006 - chr2L 22674175 intron CG40006 - chr2L_6_22670001 chr2L_22670001 RAL-820 353 chr2L 22679806 22679832 chr2L 22684578 22684604 F-element 7 4772 2.5 5.5 4.0 1.4 4798 chr2L 22679806 intron CG40006 - chr2L 22682205 intron CG40006 - chr2L 22684604 intron CG40006 - chr2L_7_22680001 chr2L_22680001 RAL-820 354 chr2L 22695043 22695066 chr2L 22695127 22695150 4 84 8.0 8.5 8.2 0.4 107 chr2L 22695043 intron CG40006 - chr2L 22695096 intron CG40006 - chr2L 22695150 intron CG40006 - chr2L_4_22695001 chr2L_22695001 RAL-820 355 chr2R 529332 529356 chr2R 537954 537973 Max-element 7 8621 2.5 2.5 2.5 2.0 8641 chr2R 529332 intron CG40378 + chr2R 533652 intron CG40378 + chr2R 537973 intron CG40378 + chr2R_7_530001 chr2R_530001 RAL-820 356 chr2R 552755 552787 chr2R 553973 553997 1360 8 1213 6.0 8.5 7.2 1.0 1242 chr2R 552755 intron CG40378 + chr2R 553376 intron CG40378 + chr2R 553997 intron CG40378 + chr2R_8_550001 chr2R_550001 RAL-820 357 chr2R 652239 652255 chr2R 652775 652791 4 536 11.5 9.0 10.2 0.4 552 chr2R 652239 intergenic not near genes chr2R 652515 intergenic not near genes chr2R 652791 intergenic not near genes chr2R_4_650001 chr2R_650001 RAL-820 358 chr2R 1732855 1732888 chr2R 1733002 1733035 4 147 1.0 2.0 1.5 1.6 180 chr2R 1732855 intron CG41520 + chr2R 1732945 intron CG41520 + chr2R 1733035 intron CG41520 + chr2R_4_1730001 chr2R_1730001 RAL-820 359 chr2R 2015135 2015160 chr2R 2015212 2015237 6 77 0.5 2.0 1.2 2.7 102 chr2R 2015135 intron CG17684 - chr2R 2015186 intron CG17684 - chr2R 2015237 intron CG17684 - chr2R_6_2015001 chr2R_2015001 RAL-820 360 chr2R 2498992 2499018 chr2R 2508138 2508164 roo 4 9146 3.0 4.0 3.5 0.9 9172 chr2R 2498992 intron MFS17 - chr2R 2503578 intron MFS17 - chr2R 2508164 intron MFS17 - chr2R_4_2500001 chr2R_2500001 RAL-820 361 chr2R 3091400 3091425 chr2R 3092146 3092171 6 743 0.5 0.5 0.5 4.0 771 chr2R 3091400 intron CG42596 + chr2R 3091786 intron CG42596 + chr2R 3092171 intron CG42596 + chr2R_6_3090001 chr2R_3090001 RAL-820 362 chr2R 4312954 4312987 chr2R 4313038 4313070 8 84 2.5 2.0 2.2 2.5 116 chr2R 4312954 intergenic not near genes chr2R 4313012 intergenic not near genes chr2R 4313070 intergenic not near genes chr2R_8_4310001 chr2R_4310001 RAL-820 363 chr2R 4329554 4329576 chr2R 4329640 4329661 6 85 3.0 1.0 2.0 2.0 107 chr2R 4329554 intron Gprk1 - chr2R 4329608 intron Gprk1 - chr2R 4329661 intron Gprk1 - chr2R_6_4325001 chr2R_4325001 RAL-820 364 chr2R 4508167 4508194 chr2R 4508248 4508275 4 80 2.5 5.5 4.0 0.8 108 chr2R 4508167 intron CR44100 + chr2R 4508221 5` UTR CR44100 + chr2R 4508275 5` UTR CR44100 + chr2R_4_4505001 chr2R_4505001 RAL-820 365 chr2R 4622950 4622987 chr2R 4624109 4624146 1360 8 1159 2.5 3.0 2.8 2.1 1196 chr2R 4622950 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624146 intergenic not near genes chr2R_8_4620001 chr2R_4620001 RAL-820 366 chr2R 4634646 4634652 chr2R 4634726 4634732 4 80 5.5 5.0 5.2 0.6 86 chr2R 4634646 intergenic not near genes chr2R 4634689 intergenic not near genes chr2R 4634732 intergenic not near genes chr2R_4_4630001 chr2R_4630001 RAL-820 367 chr2R 4750340 4750373 chr2R 4751496 4751530 1360 6 1156 0.0 1.5 0.8 3.3 1190 chr2R 4750340 intron conu + chr2R 4750935 intron conu + chr2R 4751530 intron conu + chr2R_6_4750001 chr2R_4750001 RAL-820 368 chr2R 5256759 5256787 chr2R 5256846 5256875 16 88 4.5 4.5 4.5 2.9 116 chr2R 5256759 intergenic not near genes chr2R 5256817 intergenic not near genes chr2R 5256875 intergenic not near genes chr2R_16_5255001 chr2R_5255001 RAL-820 369 chr2R 5302089 5302121 chr2R 5304237 5304265 4 2144 13.0 38.5 25.8 0.1 2176 chr2R 5302089 intergenic not near genes chr2R 5303177 intergenic not near genes chr2R 5304265 intergenic not near genes chr2R_4_5300001 chr2R_5300001 RAL-820 370 chr2R 5421528 5421562 chr2R 5421610 5421644 13 84 15.0 15.0 15.0 0.8 116 chr2R 5421528 intron laccase2 + chr2R 5421586 intron laccase2 + chr2R 5421644 intron laccase2 + chr2R_13_5420001 chr2R_5420001 RAL-820 371 chr2R 5455782 5455804 chr2R 5455859 5455881 6 78 1.5 4.0 2.8 1.6 99 chr2R 5455782 3` UTR laccase2 + chr2R 5455832 3` UTR laccase2 + chr2R 5455881 3` UTR laccase2 + chr2R_6_5455001 chr2R_5455001 RAL-820 372 chr2R 5509518 5509546 chr2R 5509614 5509642 5 96 1.0 1.5 1.2 2.3 124 chr2R 5509518 intron CG30438 + chr2R 5509580 intron CG30438 + chr2R 5509642 intron CG30438 + chr2R_5_5505001 chr2R_5505001 RAL-820 373 chr2R 5581399 5581425 chr2R 5627607 5627634 4 46208 0.0 3.0 1.5 1.6 46235 chr2R 5581399 intergenic not near genes chr2R 5604516 exon Fis1 - chr2R 5627634 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-820 374 chr2R 5640015 5640046 chr2R 5640092 5640122 4 77 3.5 2.0 2.8 1.1 107 chr2R 5640015 intergenic not near genes chr2R 5640068 intergenic not near genes chr2R 5640122 intergenic not near genes chr2R_4_5640001 chr2R_5640001 RAL-820 375 chr2R 5772536 5772547 chr2R 5772630 5772641 4 94 0.5 2.0 1.2 1.8 105 chr2R 5772536 3` UTR Gp210 + chr2R 5772588 3` UTR Gp210 + chr2R 5772641 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-820 376 chr2R 5859981 5860013 chr2R 5860093 5860122 8 112 2.5 2.0 2.2 2.5 141 chr2R 5859981 3` UTR dpr12 + chr2R 5860052 3` UTR dpr12 + chr2R 5860122 3` UTR dpr12 + chr2R_8_5860001 chr2R_5860001 RAL-820 377 chr2R 5878925 5878953 chr2R 5879005 5879033 4 76 1.0 1.5 1.2 1.8 108 chr2R 5878925 intergenic CG44438 - chr2R 5878979 intergenic CG44438 - chr2R 5879033 intergenic CG44438 - chr2R_4_5875001 chr2R_5875001 RAL-820 378 chr2R 5917774 5917802 chr2R 5917849 5917881 6 78 5.0 1.0 3.0 1.5 107 chr2R 5917774 intron CG43366 + chr2R 5917828 intron CG43366 + chr2R 5917881 intron CG43366 + chr2R_6_5915001 chr2R_5915001 RAL-820 379 chr2R 6037458 6037480 chr2R 6037543 6037565 4 85 2.0 1.5 1.8 1.4 107 chr2R 6037458 intron CG14591 - chr2R 6037512 intron CG14591 - chr2R 6037565 intron CG14591 - chr2R_4_6035001 chr2R_6035001 RAL-820 380 chr2R 6096716 6096738 chr2R 6101914 6101936 BS 9 5198 5.5 3.0 4.2 1.7 5220 chr2R 6096716 intron EcR - chr2R 6099326 intron EcR - chr2R 6101936 intron EcR - chr2R_9_6095001 chr2R_6095001 RAL-820 381 chr2R 6129327 6129358 chr2R 6129405 6129436 7 78 1.0 2.0 1.5 2.8 109 chr2R 6129327 intron EcR - chr2R 6129382 intron EcR - chr2R 6129436 intron EcR - chr2R_7_6125001 chr2R_6125001 RAL-820 382 chr2R 6168200 6168217 chr2R 6168282 6168294 4 81 3.5 3.0 3.2 1.0 94 chr2R 6168200 intron EcR - chr2R 6168247 intron EcR - chr2R 6168294 intron EcR - chr2R_4_6165001 chr2R_6165001 RAL-820 383 chr2R 6178130 6178142 chr2R 6178256 6178268 4 126 0.0 2.0 1.0 2.0 138 chr2R 6178130 intergenic not near genes chr2R 6178199 intergenic not near genes chr2R 6178268 intergenic not near genes chr2R_4_6175001 chr2R_6175001 RAL-820 384 chr2R 6494532 6494555 chr2R 6499292 6499299 F-element 5 4758 2.5 2.0 2.2 1.6 4767 chr2R 6494532 intergenic not near genes chr2R 6496916 intergenic not near genes chr2R 6499299 intergenic not near genes chr2R_5_6495001 chr2R_6495001 RAL-820 385 chr2R 6597871 6597885 chr2R 6597959 6597973 4 87 4.0 2.5 3.2 1.0 102 chr2R 6597871 intron jing + chr2R 6597922 intron jing + chr2R 6597973 intron jing + chr2R_4_6595001 chr2R_6595001 RAL-820 386 chr2R 6607928 6607956 chr2R 6608030 6608058 5 102 0.0 1.5 0.8 2.8 130 chr2R 6607928 intron jing + chr2R 6607993 intron jing + chr2R 6608058 intron jing + chr2R_5_6605001 chr2R_6605001 RAL-820 387 chr2R 6699595 6699617 chr2R 6699680 6699702 7 85 2.0 1.5 1.8 2.5 107 chr2R 6699595 intergenic Rab2 + chr2R 6699648 intergenic Rab2 + chr2R 6699702 intergenic Rab2 + chr2R_7_6695001 chr2R_6695001 RAL-820 388 chr2R 6806795 6806817 chr2R 6806880 6806902 9 85 1.0 1.0 1.0 4.5 107 chr2R 6806795 intergenic not near genes chr2R 6806848 intergenic not near genes chr2R 6806902 intergenic not near genes chr2R_9_6805001 chr2R_6805001 RAL-820 389 chr2R 6876224 6876240 chr2R 6876306 6876322 6 82 3.0 2.0 2.5 1.7 98 chr2R 6876224 intron,intron CR44169 +,Spn42Da - chr2R 6876273 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876322 5` UTR,intron CR44169 +,Spn42Da - chr2R_6_6875001 chr2R_6875001 RAL-820 390 chr2R 6901244 6901261 chr2R 6901459 6901463 4 212 1.0 1.5 1.2 1.8 219 chr2R 6901244 intron CG30158 + chr2R 6901354 intron CG30158 + chr2R 6901463 intron CG30158 + chr2R_4_6900001 chr2R_6900001 RAL-820 391 chr2R 6948084 6948099 chr2R 6948160 6948175 5 76 1.5 0.5 1.0 2.5 91 chr2R 6948084 intron,intron mim -,CheB42c - chr2R 6948130 intron,intron mim -,CheB42c - chr2R 6948175 intron,intron mim -,CheB42c - chr2R_5_6945001 chr2R_6945001 RAL-820 392 chr2R 6978815 6978838 chr2R 6978953 6978979 5 141 1.5 2.0 1.8 1.8 164 chr2R 6978815 intron vimar - chr2R 6978897 intron vimar - chr2R 6978979 intron vimar - chr2R_5_6975001 chr2R_6975001 RAL-820 393 chr2R 7139945 7139950 chr2R 7141436 7141442 hopper2 4 1491 3.0 4.0 3.5 0.9 1497 chr2R 7139945 intergenic not near genes chr2R 7140694 intergenic not near genes chr2R 7141442 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-820 394 chr2R 7160566 7160579 chr2R 7160644 7160657 6 78 2.0 4.5 3.2 1.4 91 chr2R 7160566 intron pk + chr2R 7160612 intron pk + chr2R 7160657 intron pk + chr2R_6_7160001 chr2R_7160001 RAL-820 395 chr2R 7231960 7231986 chr2R 7232034 7232064 7 77 1.0 4.5 2.8 1.8 104 chr2R 7231960 intergenic not near genes chr2R 7232012 intergenic not near genes chr2R 7232064 intergenic not near genes chr2R_7_7230001 chr2R_7230001 RAL-820 396 chr2R 7253549 7253568 chr2R 7253863 7253883 8 315 1.5 2.0 1.8 2.9 334 chr2R 7253549 intergenic not near genes chr2R 7253716 intergenic not near genes chr2R 7253883 intergenic not near genes chr2R_8_7250001 chr2R_7250001 RAL-820 397 chr2R 7269830 7269863 chr2R 7273943 7273973 6 4111 34.5 38.5 36.5 0.2 4143 chr2R 7269830 intergenic not near genes chr2R 7271902 intergenic Br140 - chr2R 7273973 exon Br140 - chr2R_6_7270001 chr2R_7270001 RAL-820 398 chr2R 7417911 7418169 chr2R 7417997 7418247 11 81 3.0 4.0 3.5 2.4 336 chr2R 7417911 intergenic not near genes chr2R 7418079 intergenic not near genes chr2R 7418247 intergenic not near genes chr2R_11_7415001 chr2R_7415001 RAL-820 399 chr2R 7563099 7563124 chr2R 7563178 7563203 7 79 2.0 1.5 1.8 2.5 104 chr2R 7563099 3` UTR Corin + chr2R 7563151 3` UTR Corin + chr2R 7563203 3` UTR Corin + chr2R_7_7560001 chr2R_7560001 RAL-820 400 chr2R 7692021 7692038 chr2R 7692102 7692119 4 81 3.0 4.0 3.5 0.9 98 chr2R 7692021 intron CG1399 - chr2R 7692070 intron CG1399 - chr2R 7692119 intron CG1399 - chr2R_4_7690001 chr2R_7690001 RAL-820 401 chr2R 7815678 7815705 chr2R 7822146 7822174 Burdock 6 6469 2.5 2.5 2.5 1.7 6496 chr2R 7815678 intergenic CG1882 + chr2R 7818926 intergenic not near genes chr2R 7822174 3` UTR cathD - chr2R_6_7815001 chr2R_7815001 RAL-820 402 chr2R 7942189 7942208 chr2R 7942280 7942299 5 91 0.5 4.0 2.2 1.6 110 chr2R 7942189 3` UTR CG14764 - chr2R 7942244 3` UTR CG14764 - chr2R 7942299 3` UTR CG14764 - chr2R_5_7940001 chr2R_7940001 RAL-820 403 chr2R 7942946 7942965 chr2R 7943031 7943050 5 85 2.5 2.0 2.2 1.6 104 chr2R 7942946 intron CG14764 - chr2R 7942998 intron CG14764 - chr2R 7943050 intron CG14764 - chr2R_5_7940001 chr2R_7940001 RAL-820 404 chr2R 8014119 8014152 chr2R 8014195 8014228 7 73 2.0 4.0 3.0 1.8 109 chr2R 8014119 intergenic CG14762 - chr2R 8014174 intergenic CG14762 - chr2R 8014228 intergenic CG14762 - chr2R_7_8010001 chr2R_8010001 RAL-820 405 chr2R 8015647 8015684 chr2R 8017670 8017706 10 2022 1.0 2.5 1.8 3.6 2059 chr2R 8015647 intergenic mir-4981 + chr2R 8016676 intergenic not near genes chr2R 8017706 intergenic not near genes chr2R_10_8015001 chr2R_8015001 RAL-820 406 chr2R 8076677 8076711 chr2R 8076757 8076791 13 79 3.5 2.5 3.0 3.2 114 chr2R 8076677 intron lig + chr2R 8076734 intron lig + chr2R 8076791 intron lig + chr2R_13_8075001 chr2R_8075001 RAL-820 407 chr2R 8151604 8151633 chr2R 8151684 8151713 4 79 1.5 1.5 1.5 1.6 109 chr2R 8151604 intron,intron Lpin -,kermit - chr2R 8151658 intron,intron Lpin -,kermit - chr2R 8151713 intron,intron Lpin -,kermit - chr2R_4_8150001 chr2R_8150001 RAL-820 408 chr2R 8209052 8209074 chr2R 8209136 8209158 10 84 2.5 0.0 1.2 4.5 106 chr2R 8209052 intron LRP1 + chr2R 8209105 intron LRP1 + chr2R 8209158 intron LRP1 + chr2R_10_8205001 chr2R_8205001 RAL-820 409 chr2R 8209606 8209617 chr2R 8209682 8209694 4 77 6.0 8.0 7.0 0.5 88 chr2R 8209606 exon LRP1 + chr2R 8209650 intron LRP1 + chr2R 8209694 intron LRP1 + chr2R_4_8205001 chr2R_8205001 RAL-820 410 chr2R 8293946 8293975 chr2R 8294037 8294066 13 89 2.0 2.5 2.2 4.1 120 chr2R 8293946 intergenic not near genes chr2R 8294006 intergenic not near genes chr2R 8294066 intergenic not near genes chr2R_13_8290001 chr2R_8290001 RAL-820 411 chr2R 8330861 8330893 chr2R 8331347 8331379 roo 10 486 2.5 1.0 1.8 3.6 518 chr2R 8330861 intron pdm3 + chr2R 8331120 intron pdm3 + chr2R 8331379 intron pdm3 + chr2R_10_8330001 chr2R_8330001 RAL-820 412 chr2R 8398214 8398243 chr2R 8402995 8403024 Doc 5 4778 2.0 3.0 2.5 1.4 4810 chr2R 8398214 intron CG2121 - chr2R 8400619 intron CG2121 - chr2R 8403024 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-820 413 chr2R 8411392 8411421 chr2R 8412718 8412747 12 1326 13.5 8.5 11.0 1.0 1355 chr2R 8411392 intron CG2121 - chr2R 8412070 intergenic CG2121 - chr2R 8412747 intergenic not near genes chr2R_12_8410001 chr2R_8410001 RAL-820 414 chr2R 8411132 8411154 chr2R 8413302 8413324 10 2172 22.5 20.0 21.2 0.5 2192 chr2R 8411132 intron CG2121 - chr2R 8412228 intergenic CG2121 - chr2R 8413324 intergenic not near genes chr2R_10_8410001 chr2R_8410001 RAL-820 415 chr2R 8419363 8419387 chr2R 8419446 8419470 9 82 1.5 1.0 1.2 4.1 107 chr2R 8419363 intergenic not near genes chr2R 8419416 intergenic not near genes chr2R 8419470 intergenic not near genes chr2R_9_8415001 chr2R_8415001 RAL-820 416 chr2R 8612304 8612599 chr2R 8612482 8612675 4 127 2.5 1.5 2.0 1.3 371 chr2R 8612304 intron CG8642 - chr2R 8612490 intron CG8642 - chr2R 8612675 intron CG8642 - chr2R_4_8610001 chr2R_8610001 RAL-820 417 chr2R 8635908 8635931 chr2R 8635986 8636009 5 78 0.0 1.5 0.8 2.8 101 chr2R 8635908 intergenic not near genes chr2R 8635958 intergenic not near genes chr2R 8636009 intergenic not near genes chr2R_5_8635001 chr2R_8635001 RAL-820 418 chr2R 8691127 8691147 chr2R 8691596 8691616 7 468 1.5 2.0 1.8 2.5 489 chr2R 8691127 intergenic Jon44E + chr2R 8691372 intergenic Jon44E + chr2R 8691616 exon Jon44E + chr2R_7_8690001 chr2R_8690001 RAL-820 419 chr2R 8722768 8722794 chr2R 8723009 8723035 pogo 6 240 3.0 2.0 2.5 1.7 267 chr2R 8722768 intron CG14767 - chr2R 8722902 intron CG14767 - chr2R 8723035 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-820 420 chr2R 8789472 8789484 chr2R 8789550 8789566 4 80 2.5 0.5 1.5 1.6 94 chr2R 8789472 intergenic not near genes chr2R 8789519 intergenic not near genes chr2R 8789566 intergenic not near genes chr2R_4_8785001 chr2R_8785001 RAL-820 421 chr2R 8801321 8801356 chr2R 8801411 8801446 9 90 0.5 3.0 1.8 3.2 125 chr2R 8801321 intron sns + chr2R 8801384 intron sns + chr2R 8801446 intron sns + chr2R_9_8800001 chr2R_8800001 RAL-820 422 chr2R 8827759 8827792 chr2R 8827835 8827868 9 76 0.5 2.5 1.5 3.6 109 chr2R 8827759 intron sns + chr2R 8827814 intron sns + chr2R 8827868 intron sns + chr2R_9_8825001 chr2R_8825001 RAL-820 423 chr2R 8849234 8849266 chr2R 8849312 8849343 6 78 0.5 1.5 1.0 3.0 109 chr2R 8849234 intron sns + chr2R 8849288 intron sns + chr2R 8849343 intron sns + chr2R_6_8845001 chr2R_8845001 RAL-820 424 chr2R 9055702 9055718 chr2R 9055990 9056023 6 302 1.5 3.0 2.2 1.9 321 chr2R 9055702 intron CG13743 - chr2R 9055862 intron CG13743 - chr2R 9056023 intron CG13743 - chr2R_6_9055001 chr2R_9055001 RAL-820 425 chr2R 9198565 9198827 chr2R 9198646 9198932 14 103 1.0 0.0 0.5 9.3 367 chr2R 9198565 intron unpg + chr2R 9198748 intron unpg + chr2R 9198932 intron unpg + chr2R_14_9195001 chr2R_9195001 RAL-820 426 chr2R 9212704 9212724 chr2R 9213189 9213210 roo 6 484 3.0 6.5 4.8 1.0 506 chr2R 9212704 intergenic CR45309 + chr2R 9212957 intergenic CR45309 + chr2R 9213210 5` UTR CR45309 + chr2R_6_9210001 chr2R_9210001 RAL-820 427 chr2R 9361777 9361809 chr2R 9365466 9365499 9 3689 1.0 1.0 1.0 4.5 3722 chr2R 9361777 intron CG13954 - chr2R 9363638 intron CG13954 - chr2R 9365499 intron CG13954 - chr2R_9_9360001 chr2R_9360001 RAL-820 428 chr2R 9380448 9380465 chr2R 9380547 9380564 6 99 1.0 2.0 1.5 2.4 116 chr2R 9380448 intron CG13954 - chr2R 9380506 intron CG13954 - chr2R 9380564 intron CG13954 - chr2R_6_9380001 chr2R_9380001 RAL-820 429 chr2R 9382241 9382269 chr2R 9382323 9382351 10 82 2.0 3.0 2.5 2.9 110 chr2R 9382241 intron CG13954 - chr2R 9382296 intron CG13954 - chr2R 9382351 intron CG13954 - chr2R_10_9380001 chr2R_9380001 RAL-820 430 chr2R 9480074 9480109 chr2R 9490605 9490640 roo 6 10530 0.5 2.5 1.5 2.4 10566 chr2R 9480074 intergenic not near genes chr2R 9485357 intergenic not near genes chr2R 9490640 intergenic not near genes chr2R_6_9485001 chr2R_9485001 RAL-820 431 chr2R 9624398 9624431 chr2R 9624474 9624507 6 70 5.0 4.0 4.5 1.1 109 chr2R 9624398 intron Mmp2 - chr2R 9624452 intron Mmp2 - chr2R 9624507 intron Mmp2 - chr2R_6_9620001 chr2R_9620001 RAL-820 432 chr2R 9687237 9687263 chr2R 9687319 9687345 5 82 3.5 2.0 2.8 1.3 108 chr2R 9687237 intergenic not near genes chr2R 9687291 intergenic not near genes chr2R 9687345 intergenic not near genes chr2R_5_9685001 chr2R_9685001 RAL-820 433 chr2R 9726612 9726636 chr2R 9734164 9734189 17.6 6 7553 2.5 1.5 2.0 2.0 7577 chr2R 9726612 intron sqa - chr2R 9730400 intron sqa - chr2R 9734189 intron sqa - chr2R_6_9730001 chr2R_9730001 RAL-820 434 chr2R 9765147 9765178 chr2R 9765227 9765242 11 76 3.0 2.0 2.5 3.1 95 chr2R 9765147 exon trpl + chr2R 9765194 exon trpl + chr2R 9765242 exon trpl + chr2R_11_9765001 chr2R_9765001 RAL-820 435 chr2R 9777539 9777564 chr2R 9777681 9777695 7 139 5.0 1.0 3.0 1.8 156 chr2R 9777539 intron CG1688 - chr2R 9777617 intron CG1688 - chr2R 9777695 intron CG1688 - chr2R_7_9775001 chr2R_9775001 RAL-820 436 chr2R 9789096 9789129 chr2R 9789186 9789218 4 90 0.0 1.0 0.5 2.7 122 chr2R 9789096 intron,5` UTR CG1688 -,CR44208 + chr2R 9789157 intron,5` UTR CG1688 -,CR44208 + chr2R 9789218 intron,5` UTR CG1688 -,CR44208 + chr2R_4_9785001 chr2R_9785001 RAL-820 437 chr2R 10005846 10005884 chr2R 10007011 10007049 1360 13 1164 1.0 2.5 1.8 4.6 1203 chr2R 10005846 intron Pka-R2 - chr2R 10006448 intron Pka-R2 - chr2R 10007049 intron Pka-R2 - chr2R_13_10005001 chr2R_10005001 RAL-820 438 chr2R 10020858 10020876 chr2R 10020934 10020952 5 75 1.5 2.0 1.8 1.8 94 chr2R 10020858 intron Pka-R2 - chr2R 10020905 intron Pka-R2 - chr2R 10020952 intron Pka-R2 - chr2R_5_10020001 chr2R_10020001 RAL-820 439 chr2R 10147646 10147673 chr2R 10147728 10147755 5 83 4.0 2.0 3.0 1.2 109 chr2R 10147646 exon KCNQ - chr2R 10147700 intron KCNQ - chr2R 10147755 intron KCNQ - chr2R_5_10145001 chr2R_10145001 RAL-820 440 chr2R 10169538 10169564 chr2R 10169618 10169644 6 78 0.5 3.0 1.8 2.1 106 chr2R 10169538 intron KCNQ - chr2R 10169591 intron KCNQ - chr2R 10169644 intron KCNQ - chr2R_6_10165001 chr2R_10165001 RAL-820 441 chr2R 10176878 10176913 chr2R 10186045 10186080 roo 6 9167 3.0 2.0 2.5 1.7 9202 chr2R 10176878 intron KCNQ - chr2R 10181479 intron KCNQ - chr2R 10186080 intron KCNQ - chr2R_6_10180001 chr2R_10180001 RAL-820 442 chr2R 10282310 10282337 chr2R 10282417 10282444 4 107 4.0 3.0 3.5 0.9 134 chr2R 10282310 intron CAP + chr2R 10282377 intron CAP + chr2R 10282444 intron CAP + chr2R_4_10280001 chr2R_10280001 RAL-820 443 chr2R 10411820 10411834 chr2R 10411902 10411916 5 82 0.0 6.5 3.2 1.2 96 chr2R 10411820 intron CG42732 - chr2R 10411868 intron CG42732 - chr2R 10411916 intron CG42732 - chr2R_5_10410001 chr2R_10410001 RAL-820 444 chr2R 10429021 10429048 chr2R 10429097 10429121 6 76 1.0 0.5 0.8 3.3 100 chr2R 10429021 intergenic not near genes chr2R 10429071 intergenic not near genes chr2R 10429121 intergenic not near genes chr2R_6_10425001 chr2R_10425001 RAL-820 445 chr2R 10469031 10469053 chr2R 10469147 10469169 8 116 3.0 4.0 3.5 1.8 138 chr2R 10469031 intron CG11777 + chr2R 10469100 intron CG11777 + chr2R 10469169 intron CG11777 + chr2R_8_10465001 chr2R_10465001 RAL-820 446 chr2R 10572011 10572026 chr2R 10572202 10572218 6 192 5.0 2.5 3.8 1.2 207 chr2R 10572011 intron psq + chr2R 10572114 intron psq + chr2R 10572218 intron psq + chr2R_6_10570001 chr2R_10570001 RAL-820 447 chr2R 10585577 10585590 chr2R 10594158 10594173 Tirant 8 8582 1.5 3.0 2.2 2.5 8596 chr2R 10585577 intron psq + chr2R 10589875 intron psq + chr2R 10594173 intron psq + chr2R_8_10585001 chr2R_10585001 RAL-820 448 chr2R 10621242 10621258 chr2R 10621357 10621372 6 114 4.0 1.0 2.5 1.7 130 chr2R 10621242 intron CG11883 + chr2R 10621307 intron CG11883 + chr2R 10621372 intron CG11883 + chr2R_6_10620001 chr2R_10620001 RAL-820 449 chr2R 10690377 10690403 chr2R 10690455 10690481 6 77 1.0 2.0 1.5 2.4 104 chr2R 10690377 intron stan + chr2R 10690429 intron stan + chr2R 10690481 intron stan + chr2R_6_10690001 chr2R_10690001 RAL-820 450 chr2R 10758377 10758407 chr2R 10758491 10758521 10 113 2.5 2.5 2.5 2.9 144 chr2R 10758377 intron CG33144 - chr2R 10758449 intron CG33144 - chr2R 10758521 intron CG33144 - chr2R_10_10755001 chr2R_10755001 RAL-820 451 chr2R 10827335 10827360 chr2R 10827422 10827448 6 88 1.5 2.5 2.0 2.0 113 chr2R 10827335 exon CG12325 + chr2R 10827392 3` UTR CG12325 + chr2R 10827448 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_6_10825001 chr2R_10825001 RAL-820 452 chr2R 10871655 10871675 chr2R 10871734 10871759 5 82 0.0 4.5 2.2 1.6 104 chr2R 10871655 intron CG30015 - chr2R 10871707 intron CG30015 - chr2R 10871759 intron CG30015 - chr2R_5_10870001 chr2R_10870001 RAL-820 453 chr2R 10937799 10937831 chr2R 10937936 10937969 12 137 0.0 2.5 1.2 5.5 170 chr2R 10937799 intergenic not near genes chr2R 10937884 intergenic not near genes chr2R 10937969 intergenic Spn47C - chr2R_12_10935001 chr2R_10935001 RAL-820 454 chr2R 10948028 10948062 chr2R 10955578 10955613 17.6 9 7551 0.5 3.0 1.8 3.2 7585 chr2R 10948028 intergenic not near genes chr2R 10951820 intergenic not near genes chr2R 10955613 intergenic not near genes chr2R_9_10950001 chr2R_10950001 RAL-820 455 chr2R 10959091 10959104 chr2R 10959170 10959183 4 79 1.5 1.5 1.5 1.6 92 chr2R 10959091 intergenic not near genes chr2R 10959137 intergenic not near genes chr2R 10959183 intergenic not near genes chr2R_4_10955001 chr2R_10955001 RAL-820 456 chr2R 10979659 10979667 chr2R 10980129 10980137 297 4 470 3.5 3.0 3.2 1.0 478 chr2R 10979659 intergenic not near genes chr2R 10979898 intergenic not near genes chr2R 10980137 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-820 457 chr2R 10992945 10992974 chr2R 10993031 10993059 10 84 1.5 0.5 1.0 5.0 114 chr2R 10992945 intron luna - chr2R 10993002 intron luna - chr2R 10993059 intron luna - chr2R_10_10990001 chr2R_10990001 RAL-820 458 chr2R 11009813 11009848 chr2R 11018986 11019022 roo 9 9173 1.5 2.0 1.8 3.2 9209 chr2R 11009813 intron luna - chr2R 11014418 intron luna - chr2R 11019022 intron luna - chr2R_9_11010001 chr2R_11010001 RAL-820 459 chr2R 11019878 11019910 chr2R 11024944 11024975 jockey 8 5066 1.0 2.5 1.8 2.9 5097 chr2R 11019878 intron luna - chr2R 11022426 intron luna - chr2R 11024975 intron luna - chr2R_8_11020001 chr2R_11020001 RAL-820 460 chr2R 11031954 11031976 chr2R 11032034 11032058 4 82 0.0 0.5 0.2 3.3 104 chr2R 11031954 intron luna - chr2R 11032006 intron luna - chr2R 11032058 intron luna - chr2R_4_11030001 chr2R_11030001 RAL-820 461 chr2R 11064706 11064734 chr2R 11064789 11064817 5 83 2.5 3.0 2.8 1.3 111 chr2R 11064706 intron luna - chr2R 11064762 intron luna - chr2R 11064817 intron luna - chr2R_5_11060001 chr2R_11060001 RAL-820 462 chr2R 11071558 11071587 chr2R 11071663 11071691 11 105 0.5 0.5 0.5 7.3 133 chr2R 11071558 intron luna - chr2R 11071624 intron luna - chr2R 11071691 intron luna - chr2R_11_11070001 chr2R_11070001 RAL-820 463 chr2R 11097367 11097388 chr2R 11097472 11097492 6 105 2.0 3.0 2.5 1.7 125 chr2R 11097367 intron luna - chr2R 11097430 intron luna - chr2R 11097492 intron luna - chr2R_6_11095001 chr2R_11095001 RAL-820 464 chr2R 11129817 11129843 chr2R 11129900 11129926 7 83 1.0 1.5 1.2 3.2 109 chr2R 11129817 intergenic not near genes chr2R 11129872 intergenic not near genes chr2R 11129926 intergenic not near genes chr2R_7_11125001 chr2R_11125001 RAL-820 465 chr2R 11179272 11179287 chr2R 11179358 11179373 7 85 1.5 3.0 2.2 2.2 101 chr2R 11179272 intron shn + chr2R 11179322 intron shn + chr2R 11179373 intron shn + chr2R_7_11175001 chr2R_11175001 RAL-820 466 chr2R 11249176 11249189 chr2R 11249302 11249315 4 126 3.0 0.0 1.5 1.6 139 chr2R 11249176 intergenic CG43112 + chr2R 11249246 intergenic CG43112 + chr2R 11249315 intergenic CG43112 + chr2R_4_11245001 chr2R_11245001 RAL-820 467 chr2R 11415530 11415536 chr2R 11418678 11418685 opus 4 3149 4.5 7.0 5.8 0.6 3155 chr2R 11415530 intron Drip - chr2R 11417108 intron Drip - chr2R 11418685 intron Drip - chr2R_4_11415001 chr2R_11415001 RAL-820 468 chr2R 11415540 11415551 chr2R 11418673 11418699 opus 5 3145 2.5 6.5 4.5 0.9 3159 chr2R 11415540 intron Drip - chr2R 11417120 intron Drip - chr2R 11418699 intron Drip - chr2R_5_11415001 chr2R_11415001 RAL-820 469 chr2R 11425656 11425675 chr2R 11425736 11425752 7 79 0.0 2.5 1.2 3.2 96 chr2R 11425656 intron Drip - chr2R 11425704 intron Drip - chr2R 11425752 intron Drip - chr2R_7_11425001 chr2R_11425001 RAL-820 470 chr2R 11439193 11439212 chr2R 11439267 11439288 4 74 1.0 2.5 1.8 1.4 95 chr2R 11439193 intron CG7777 + chr2R 11439240 intron CG7777 + chr2R 11439288 intron CG7777 + chr2R_4_11435001 chr2R_11435001 RAL-820 471 chr2R 11472648 11472675 chr2R 11473845 11473872 pogo 8 1196 2.5 3.0 2.8 2.1 1224 chr2R 11472648 intergenic not near genes chr2R 11473260 intergenic not near genes chr2R 11473872 intergenic not near genes chr2R_8_11470001 chr2R_11470001 RAL-820 472 chr2R 11533763 11533782 chr2R 11535305 11535322 7 1541 3.0 2.5 2.8 1.8 1559 chr2R 11533763 intergenic not near genes chr2R 11534542 intergenic not near genes chr2R 11535322 intergenic not near genes chr2R_7_11530001 chr2R_11530001 RAL-820 473 chr2R 11636409 11636435 chr2R 11636486 11636513 5 77 1.5 2.0 1.8 1.8 104 chr2R 11636409 intron CG9005 - chr2R 11636461 intron CG9005 - chr2R 11636513 intron CG9005 - chr2R_5_11635001 chr2R_11635001 RAL-820 474 chr2R 11641853 11641886 chr2R 11641947 11641980 9 94 0.0 3.5 1.8 3.2 127 chr2R 11641853 3` UTR CG9003 - chr2R 11641916 3` UTR CG9003 - chr2R 11641980 3` UTR CG9003 - chr2R_9_11640001 chr2R_11640001 RAL-820 475 chr2R 11934075 11934104 chr2R 11934157 11934186 4 82 2.0 2.5 2.2 1.2 111 chr2R 11934075 intergenic not near genes chr2R 11934130 intergenic not near genes chr2R 11934186 intergenic not near genes chr2R_4_11930001 chr2R_11930001 RAL-820 476 chr2R 12045294 12045329 chr2R 12045385 12045420 7 90 2.0 2.5 2.2 2.2 126 chr2R 12045294 intron Drep-1 + chr2R 12045357 intron Drep-1 + chr2R 12045420 intron Drep-1 + chr2R_7_12045001 chr2R_12045001 RAL-820 477 chr2R 12120409 12120426 chr2R 12120491 12120507 10 80 4.0 4.0 4.0 2.0 98 chr2R 12120409 intergenic not near genes chr2R 12120458 intergenic not near genes chr2R 12120507 intergenic not near genes chr2R_10_12120001 chr2R_12120001 RAL-820 478 chr2R 12124833 12124857 chr2R 12124917 12124941 8 84 2.0 3.0 2.5 2.3 108 chr2R 12124833 intergenic not near genes chr2R 12124887 intergenic not near genes chr2R 12124941 intergenic not near genes chr2R_8_12120001 chr2R_12120001 RAL-820 479 chr2R 12186001 12186028 chr2R 12186096 12186123 12 94 3.5 3.0 3.2 2.9 122 chr2R 12186001 intron Cyp6g1 + chr2R 12186062 intron Cyp6g1 + chr2R 12186123 intron Cyp6g1 + chr2R_12_12185001 chr2R_12185001 RAL-820 480 chr2R 12187471 12187508 chr2R 12190087 12190124 47 2617 105.5 62.0 83.8 0.6 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_47_12185001 chr2R_12185001 RAL-820 481 chr2R 12217576 12217601 chr2R 12217657 12217682 6 80 2.5 1.5 2.0 2.0 106 chr2R 12217576 intergenic not near genes chr2R 12217629 intergenic not near genes chr2R 12217682 intergenic not near genes chr2R_6_12215001 chr2R_12215001 RAL-820 482 chr2R 12363383 12363408 chr2R 12363815 12363840 9 432 5.0 1.5 3.2 2.1 457 chr2R 12363383 intergenic CG30043 + chr2R 12363612 intergenic CG30043 + chr2R 12363840 intergenic not near genes chr2R_9_12360001 chr2R_12360001 RAL-820 483 chr2R 12417463 12417482 chr2R 12417543 12417562 5 77 3.0 5.0 4.0 1.0 99 chr2R 12417463 exon CG13157 + chr2R 12417512 exon CG13157 + chr2R 12417562 exon CG13157 + chr2R_5_12415001 chr2R_12415001 RAL-820 484 chr2R 12492099 12492123 chr2R 12492185 12492216 6 92 3.5 0.0 1.8 2.1 117 chr2R 12492099 intron fdl - chr2R 12492158 intron fdl - chr2R 12492216 intron fdl - chr2R_6_12490001 chr2R_12490001 RAL-820 485 chr2R 12501701 12501728 chr2R 12503861 12503870 Rt1c 5 2158 2.0 4.5 3.2 1.2 2169 chr2R 12501701 intron fdl - chr2R 12502786 intron fdl - chr2R 12503870 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-820 486 chr2R 12504149 12504179 chr2R 12504224 12504256 10 76 2.5 2.5 2.5 2.9 107 chr2R 12504149 intron fdl - chr2R 12504202 intron fdl - chr2R 12504256 intron fdl - chr2R_10_12500001 chr2R_12500001 RAL-820 487 chr2R 12527274 12527302 chr2R 12527483 12527511 7 209 4.0 0.5 2.2 2.2 237 chr2R 12527274 intergenic not near genes chr2R 12527392 intergenic not near genes chr2R 12527511 intergenic not near genes chr2R_7_12525001 chr2R_12525001 RAL-820 488 chr2R 12540479 12540491 chr2R 12540561 12540571 6 81 2.0 2.0 2.0 2.0 92 chr2R 12540479 intron fra + chr2R 12540525 intron fra + chr2R 12540571 intron fra + chr2R_6_12540001 chr2R_12540001 RAL-820 489 chr2R 12548544 12548554 chr2R 12548621 12548631 5 77 0.5 6.5 3.5 1.1 87 chr2R 12548544 intron fra + chr2R 12548588 intron fra + chr2R 12548631 intron fra + chr2R_5_12545001 chr2R_12545001 RAL-820 490 chr2R 12602816 12602834 chr2R 12602900 12602918 4 84 0.0 1.5 0.8 2.2 102 chr2R 12602816 intron Amph + chr2R 12602867 intron Amph + chr2R 12602918 intron Amph + chr2R_4_12600001 chr2R_12600001 RAL-820 491 chr2R 12707529 12707542 chr2R 12715895 12715908 roo 4 8366 0.0 0.5 0.2 3.3 8379 chr2R 12707529 intron CG42663 + chr2R 12711718 intron CG42663 + chr2R 12715908 intron CG42663 + chr2R_4_12710001 chr2R_12710001 RAL-820 492 chr2R 12766821 12766840 chr2R 12766955 12766973 10 133 0.5 5.0 2.8 2.6 152 chr2R 12766821 intergenic not near genes chr2R 12766897 intergenic not near genes chr2R 12766973 intergenic not near genes chr2R_10_12765001 chr2R_12765001 RAL-820 493 chr2R 12808322 12808347 chr2R 12808417 12808441 8 95 0.5 4.0 2.2 2.5 119 chr2R 12808322 intergenic not near genes chr2R 12808382 intergenic not near genes chr2R 12808441 intergenic not near genes chr2R_8_12805001 chr2R_12805001 RAL-820 494 chr2R 12819452 12819459 chr2R 12824527 12824536 jockey 7 5077 1.5 4.5 3.0 1.8 5084 chr2R 12819452 intergenic not near genes chr2R 12821994 intergenic not near genes chr2R 12824536 intergenic not near genes chr2R_7_12820001 chr2R_12820001 RAL-820 495 chr2R 12897460 12897477 chr2R 12897551 12897568 6 89 3.5 0.0 1.8 2.1 108 chr2R 12897460 intron vg + chr2R 12897514 intron vg + chr2R 12897568 intron vg + chr2R_6_12895001 chr2R_12895001 RAL-820 496 chr2R 12951669 12951688 chr2R 12951749 12951764 11 80 2.5 2.5 2.5 3.1 95 chr2R 12951669 intron,intron CG44251 -,CG44250 - chr2R 12951716 intron,intron CG44251 -,CG44250 - chr2R 12951764 intron,intron CG44251 -,CG44250 - chr2R_11_12950001 chr2R_12950001 RAL-820 497 chr2R 13136842 13136847 chr2R 13141638 13141645 Doc 4 4797 7.5 4.0 5.8 0.6 4803 chr2R 13136842 exon Cap-G + chr2R 13139244 intron Cap-G + chr2R 13141645 intron Cap-G + chr2R_4_13135001 chr2R_13135001 RAL-820 498 chr2R 13136853 13136870 chr2R 13141637 13141668 Doc 6 4795 4.0 4.0 4.0 1.2 4815 chr2R 13136853 exon Cap-G + chr2R 13139260 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_6_13135001 chr2R_13135001 RAL-820 499 chr2R 13167427 13167455 chr2R 13167521 13167547 8 94 3.5 0.0 1.8 2.9 120 chr2R 13167427 intron GLaz - chr2R 13167487 intron GLaz - chr2R 13167547 intron GLaz - chr2R_8_13165001 chr2R_13165001 RAL-820 500 chr2R 13309662 13309683 chr2R 13309780 13309801 5 117 3.5 0.0 1.8 1.8 139 chr2R 13309662 intergenic not near genes chr2R 13309732 intergenic not near genes chr2R 13309801 intergenic not near genes chr2R_5_13305001 chr2R_13305001 RAL-820 501 chr2R 13438871 13438892 chr2R 13440189 13440210 7 1319 10.0 27.0 18.5 0.4 1339 chr2R 13438871 5` UTR CG42321 - chr2R 13439540 3` UTR cnn - chr2R 13440210 exon cnn - chr2R_7_13435001 chr2R_13435001 RAL-820 502 chr2R 13574399 13574432 chr2R 13574480 13574513 4 81 1.0 3.0 2.0 1.3 114 chr2R 13574399 intergenic CG42808 - chr2R 13574456 intergenic CG42808 -,CR44365 + chr2R 13574513 intergenic CG42808 -,CR44365 + chr2R_4_13570001 chr2R_13570001 RAL-820 503 chr2R 13580505 13580531 chr2R 13580853 13580881 jockey 9 350 0.5 4.5 2.5 2.6 376 chr2R 13580505 3` UTR CG6191 - chr2R 13580693 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580881 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_9_13580001 chr2R_13580001 RAL-820 504 chr2R 13694629 13694646 chr2R 13694706 13694723 7 75 3.5 0.5 2.0 2.3 94 chr2R 13694629 intron fas + chr2R 13694676 intron fas + chr2R 13694723 intron fas + chr2R_7_13690001 chr2R_13690001 RAL-820 505 chr2R 13768988 13769005 chr2R 13769087 13769104 8 98 3.5 3.5 3.5 1.8 116 chr2R 13768988 intergenic not near genes chr2R 13769046 intergenic not near genes chr2R 13769104 intergenic not near genes chr2R_8_13765001 chr2R_13765001 RAL-820 506 chr2R 13905601 13905635 chr2R 13907583 13907606 Rt1a 12 1980 3.0 2.5 2.8 3.2 2005 chr2R 13905601 intron shot - chr2R 13906604 intron shot - chr2R 13907606 intron shot - chr2R_12_13905001 chr2R_13905001 RAL-820 507 chr2R 14175986 14176000 chr2R 14176294 14176310 4 310 2.0 3.0 2.5 1.1 324 chr2R 14175986 intron cg + chr2R 14176148 intron cg + chr2R 14176310 intron cg + chr2R_4_14175001 chr2R_14175001 RAL-820 508 chr2R 14223253 14223270 chr2R 14223329 14223342 4 75 6.0 1.0 3.5 0.9 89 chr2R 14223253 intron CG8468 + chr2R 14223298 intron CG8468 + chr2R 14223342 intron CG8468 + chr2R_4_14220001 chr2R_14220001 RAL-820 509 chr2R 14265444 14265465 chr2R 14265519 14265541 4 75 3.0 3.0 3.0 1.0 97 chr2R 14265444 intron CG8547 - chr2R 14265492 intron CG8547 - chr2R 14265541 intron CG8547 - chr2R_4_14265001 chr2R_14265001 RAL-820 510 chr2R 14266764 14266793 chr2R 14266838 14266868 4 75 1.0 3.0 2.0 1.3 104 chr2R 14266764 intron CG8547 - chr2R 14266816 intron CG8547 - chr2R 14266868 intron CG8547 - chr2R_4_14265001 chr2R_14265001 RAL-820 511 chr2R 14357557 14357575 chr2R 14357647 14357665 5 90 1.5 2.0 1.8 1.8 108 chr2R 14357557 intergenic CG8617 -,Arc1 - chr2R 14357611 intergenic Arc1 -,CG8617 - chr2R 14357665 intergenic Arc1 -,CG8617 - chr2R_5_14355001 chr2R_14355001 RAL-820 512 chr2R 14387371 14387388 chr2R 14387478 14387495 5 107 1.0 2.0 1.5 2.0 124 chr2R 14387371 intergenic not near genes chr2R 14387433 intergenic not near genes chr2R 14387495 intergenic not near genes chr2R_5_14385001 chr2R_14385001 RAL-820 513 chr2R 14393868 14393895 chr2R 14393950 14393980 6 84 3.5 1.5 2.5 1.7 112 chr2R 14393868 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14393980 intergenic not near genes chr2R_6_14390001 chr2R_14390001 RAL-820 514 chr2R 14467307 14467326 chr2R 14476465 14476476 roo 5 9156 5.5 2.0 3.8 1.0 9169 chr2R 14467307 intergenic not near genes chr2R 14471892 intergenic not near genes chr2R 14476476 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-820 515 chr2R 14497393 14497415 chr2R 14498559 14498576 1360 4 1165 2.0 1.0 1.5 1.6 1183 chr2R 14497393 3` UTR Cpsf160 - chr2R 14497984 intron Cpsf160 - chr2R 14498576 3` UTR Cpsf160 - chr2R_4_14495001 chr2R_14495001 RAL-820 516 chr2R 14524852 14524875 chr2R 14524944 14524972 10 96 6.5 1.5 4.0 2.0 120 chr2R 14524852 intergenic not near genes chr2R 14524912 intergenic not near genes chr2R 14524972 intergenic not near genes chr2R_10_14520001 chr2R_14520001 RAL-820 517 chr2R 14530767 14530790 chr2R 14530846 14530869 4 79 1.5 1.5 1.5 1.6 102 chr2R 14530767 intron ttv + chr2R 14530818 intron ttv + chr2R 14530869 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-820 518 chr2R 14565560 14565587 chr2R 14565637 14565664 7 77 3.0 3.0 3.0 1.8 104 chr2R 14565560 intron ttv + chr2R 14565612 intron ttv + chr2R 14565664 intron ttv + chr2R_7_14565001 chr2R_14565001 RAL-820 519 chr2R 14799866 14799897 chr2R 14799942 14799973 4 76 1.0 2.0 1.5 1.6 107 chr2R 14799866 intron kn - chr2R 14799920 intron kn - chr2R 14799973 intron kn - chr2R_4_14795001 chr2R_14795001 RAL-820 520 chr2R 14889210 14889240 chr2R 14897818 14897845 Max-element 6 8606 4.5 0.0 2.2 1.9 8635 chr2R 14889210 intergenic Cyp6a8 - chr2R 14893528 intergenic not near genes chr2R 14897845 intergenic not near genes chr2R_6_14890001 chr2R_14890001 RAL-820 521 chr2R 14911701 14911722 chr2R 14911824 14911845 5 123 3.0 2.5 2.8 1.3 144 chr2R 14911701 intron CG10249 - chr2R 14911773 intron CG10249 - chr2R 14911845 intron CG10249 - chr2R_5_14910001 chr2R_14910001 RAL-820 522 chr2R 14917847 14917878 chr2R 14917932 14917963 9 85 1.5 3.0 2.2 2.8 116 chr2R 14917847 intron CG10249 - chr2R 14917905 intron CG10249 - chr2R 14917963 intron CG10249 - chr2R_9_14915001 chr2R_14915001 RAL-820 523 chr2R 14922152 14922170 chr2R 14922220 14922246 6 74 3.5 1.0 2.2 1.9 94 chr2R 14922152 intron CG10249 - chr2R 14922199 intron CG10249 - chr2R 14922246 intron CG10249 - chr2R_6_14920001 chr2R_14920001 RAL-820 524 chr2R 14979762 14979787 chr2R 14979838 14979863 7 76 3.0 0.5 1.8 2.5 101 chr2R 14979762 3` UTR ckn + chr2R 14979812 3` UTR ckn + chr2R 14979863 3` UTR ckn + chr2R_7_14975001 chr2R_14975001 RAL-820 525 chr2R 15004724 15004755 chr2R 15005052 15005083 jockey 11 328 2.5 3.0 2.8 2.9 359 chr2R 15004724 intergenic not near genes chr2R 15004904 intergenic not near genes chr2R 15005083 intergenic not near genes chr2R_11_15000001 chr2R_15000001 RAL-820 526 chr2R 15084984 15085001 chr2R 15092031 15092050 297 4 7048 3.0 1.0 2.0 1.3 7066 chr2R 15084984 intergenic not near genes chr2R 15088517 intergenic not near genes chr2R 15092050 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-820 527 chr2R 15094481 15094515 chr2R 15094574 15094608 7 93 2.0 3.0 2.5 2.0 127 chr2R 15094481 intergenic not near genes chr2R 15094544 intergenic not near genes chr2R 15094608 intergenic not near genes chr2R_7_15090001 chr2R_15090001 RAL-820 528 chr2R 15094884 15094911 chr2R 15094960 15094988 5 77 3.0 1.5 2.2 1.6 104 chr2R 15094884 intergenic not near genes chr2R 15094936 intergenic not near genes chr2R 15094988 intergenic not near genes chr2R_5_15090001 chr2R_15090001 RAL-820 529 chr2R 15119316 15119350 chr2R 15127797 15127826 Tirant 11 8478 3.0 3.0 3.0 2.8 8510 chr2R 15119316 intron chn + chr2R 15123571 intron chn + chr2R 15127826 intron chn + chr2R_11_15120001 chr2R_15120001 RAL-820 530 chr2R 15133485 15133513 chr2R 15133564 15133592 4 79 1.0 1.0 1.0 2.0 107 chr2R 15133485 intron chn + chr2R 15133538 intron chn + chr2R 15133592 intron chn + chr2R_4_15130001 chr2R_15130001 RAL-820 531 chr2R 15137969 15137996 chr2R 15138047 15138078 5 81 3.0 0.0 1.5 2.0 109 chr2R 15137969 intron chn + chr2R 15138024 intron chn + chr2R 15138078 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-820 532 chr2R 15294680 15294709 chr2R 15294760 15294791 6 81 2.5 4.5 3.5 1.3 111 chr2R 15294680 intron,3` UTR Trpm -,CR44241 - chr2R 15294736 intron,3` UTR Trpm -,CR44241 - chr2R 15294791 intron,3` UTR Trpm -,CR44241 - chr2R_6_15290001 chr2R_15290001 RAL-820 533 chr2R 15624853 15624884 chr2R 15624932 15624961 4 76 0.0 2.5 1.2 1.8 108 chr2R 15624853 intron CG42524 + chr2R 15624907 intron CG42524 + chr2R 15624961 intron CG42524 + chr2R_4_15620001 chr2R_15620001 RAL-820 534 chr2R 15712701 15712716 chr2R 15712787 15712802 5 86 7.0 3.0 5.0 0.8 101 chr2R 15712701 intergenic CG30083 - chr2R 15712752 intergenic CG30083 - chr2R 15712802 intergenic CG30083 - chr2R_5_15710001 chr2R_15710001 RAL-820 535 chr2R 15847607 15847626 chr2R 15847684 15847701 8 77 2.0 1.0 1.5 3.2 94 chr2R 15847607 intron tun + chr2R 15847654 intron tun + chr2R 15847701 intron tun + chr2R_8_15845001 chr2R_15845001 RAL-820 536 chr2R 16054954 16054961 chr2R 16055034 16055041 4 81 5.0 5.0 5.0 0.7 87 chr2R 16054954 intron CG8405 + chr2R 16054998 intron CG8405 + chr2R 16055041 intron CG8405 + chr2R_4_16050001 chr2R_16050001 RAL-820 537 chr2R 16245413 16245428 chr2R 16245507 16245522 4 94 0.0 3.0 1.5 1.6 109 chr2R 16245413 intron CngA - chr2R 16245468 intron CngA - chr2R 16245522 intron CngA - chr2R_4_16245001 chr2R_16245001 RAL-820 538 chr2R 16489282 16489295 chr2R 16489366 16489379 5 84 1.0 3.0 2.0 1.7 97 chr2R 16489282 intergenic CG33459 + chr2R 16489330 intergenic CG33459 + chr2R 16489379 intergenic CG33459 + chr2R_5_16485001 chr2R_16485001 RAL-820 539 chr2R 16547018 16547033 chr2R 16547097 16547113 8 79 0.0 0.0 0.0 8.0 95 chr2R 16547018 intergenic not near genes chr2R 16547066 intergenic not near genes chr2R 16547113 intergenic not near genes chr2R_8_16545001 chr2R_16545001 RAL-820 540 chr2R 16577924 16577941 chr2R 16578330 16578347 7 406 2.0 3.5 2.8 1.8 423 chr2R 16577924 intergenic not near genes chr2R 16578136 intergenic not near genes chr2R 16578347 intergenic not near genes chr2R_7_16575001 chr2R_16575001 RAL-820 541 chr2R 16617062 16617087 chr2R 16617141 16617166 6 79 1.5 2.5 2.0 2.0 104 chr2R 16617062 intron CG5065 + chr2R 16617114 intron CG5065 + chr2R 16617166 intron CG5065 + chr2R_6_16615001 chr2R_16615001 RAL-820 542 chr2R 16619974 16620005 chr2R 16620055 16620086 10 79 1.0 0.0 0.5 6.7 112 chr2R 16619974 intron CG5065 + chr2R 16620030 intron CG5065 + chr2R 16620086 intron CG5065 + chr2R_10_16620001 chr2R_16620001 RAL-820 543 chr2R 16705229 16705256 chr2R 16705357 16705383 11 127 2.5 2.0 2.2 3.4 154 chr2R 16705229 intron CG30463 - chr2R 16705306 intron CG30463 - chr2R 16705383 intron CG30463 - chr2R_11_16705001 chr2R_16705001 RAL-820 544 chr2R 16732865 16732883 chr2R 16733035 16733053 5 170 2.0 1.5 1.8 1.8 188 chr2R 16732865 5` UTR CG30463 - chr2R 16732959 intergenic CG30463 - chr2R 16733053 intergenic CG30463 - chr2R_5_16730001 chr2R_16730001 RAL-820 545 chr2R 16787481 16787493 chr2R 16787563 16787575 5 82 4.5 0.5 2.5 1.4 94 chr2R 16787481 intron CG5522 + chr2R 16787528 intron CG5522 + chr2R 16787575 intron CG5522 + chr2R_5_16785001 chr2R_16785001 RAL-820 546 chr2R 17147251 17147266 chr2R 17152282 17152297 jockey 6 5031 2.5 5.0 3.8 1.2 5046 chr2R 17147251 intergenic not near genes chr2R 17149774 intergenic not near genes chr2R 17152297 intergenic not near genes chr2R_6_17145001 chr2R_17145001 RAL-820 547 chr2R 17176357 17176389 chr2R 17182546 17182579 diver 6 6190 1.0 1.0 1.0 3.0 6222 chr2R 17176357 intergenic not near genes chr2R 17179468 intergenic not near genes chr2R 17182579 intergenic not near genes chr2R_6_17175001 chr2R_17175001 RAL-820 548 chr2R 17236525 17236542 chr2R 17241714 17241745 copia 4 5200 2.5 3.0 2.8 1.1 5220 chr2R 17236525 intron mbl + chr2R 17239135 intron mbl + chr2R 17241745 intron mbl + chr2R_4_17235001 chr2R_17235001 RAL-820 549 chr2R 17351393 17351425 chr2R 17351475 17351507 5 83 0.0 3.0 1.5 2.0 114 chr2R 17351393 intron mbl + chr2R 17351450 intron mbl + chr2R 17351507 intron mbl + chr2R_5_17350001 chr2R_17350001 RAL-820 550 chr2R 17438025 17438055 chr2R 17438102 17438131 6 77 2.5 3.0 2.8 1.6 106 chr2R 17438025 intron EDTP - chr2R 17438078 intron EDTP - chr2R 17438131 intron EDTP - chr2R_6_17435001 chr2R_17435001 RAL-820 551 chr2R 17616973 17617012 chr2R 17617051 17617090 10 78 2.0 1.5 1.8 3.6 117 chr2R 17616973 intron,3` UTR CG10936 -,CG44403 - chr2R 17617032 intron,3` UTR CG10936 -,CG44403 - chr2R 17617090 intron,3` UTR CG10936 -,CG44403 - chr2R_10_17615001 chr2R_17615001 RAL-820 552 chr2R 17784026 17784054 chr2R 17784266 17784295 pogo 7 240 3.0 5.5 4.2 1.3 269 chr2R 17784026 intergenic mir-31a - chr2R 17784160 intergenic mir-31a - chr2R 17784295 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-820 553 chr2R 17913485 17913512 chr2R 17913593 17913620 7 108 0.0 4.5 2.2 2.2 135 chr2R 17913485 intron Elk + chr2R 17913552 intron Elk + chr2R 17913620 intron Elk + chr2R_7_17910001 chr2R_17910001 RAL-820 554 chr2R 17918164 17918184 chr2R 17918241 17918261 5 77 1.0 1.5 1.2 2.3 97 chr2R 17918164 intron Elk + chr2R 17918212 intron Elk + chr2R 17918261 intron Elk + chr2R_5_17915001 chr2R_17915001 RAL-820 555 chr2R 18111688 18111716 chr2R 18115556 18115584 F-element 5 3868 2.0 1.0 1.5 2.0 3896 chr2R 18111688 intergenic not near genes chr2R 18113636 intergenic not near genes chr2R 18115584 intergenic not near genes chr2R_5_18110001 chr2R_18110001 RAL-820 556 chr2R 18124339 18124371 chr2R 18124416 18124444 13 76 2.5 4.5 3.5 2.9 105 chr2R 18124339 intron stau - chr2R 18124392 intron stau - chr2R 18124444 intron stau - chr2R_13_18120001 chr2R_18120001 RAL-820 557 chr2R 18140574 18140607 chr2R 18140650 18140683 6 76 1.5 3.5 2.5 1.7 109 chr2R 18140574 intron pAbp + chr2R 18140628 intron pAbp + chr2R 18140683 intron pAbp + chr2R_6_18140001 chr2R_18140001 RAL-820 558 chr2R 18255698 18255723 chr2R 18255912 18255936 6 214 0.0 2.0 1.0 3.0 238 chr2R 18255698 intergenic not near genes chr2R 18255817 intergenic not near genes chr2R 18255936 intergenic not near genes chr2R_6_18255001 chr2R_18255001 RAL-820 559 chr2R 18358387 18358423 chr2R 18372599 18372635 roo 5 14212 2.5 1.5 2.0 1.7 14248 chr2R 18358387 intergenic not near genes chr2R 18365511 intergenic not near genes chr2R 18372635 intergenic not near genes chr2R_5_18365001 chr2R_18365001 RAL-820 560 chr2R 18477749 18477758 chr2R 18477832 18477840 5 83 0.0 4.5 2.2 1.6 91 chr2R 18477749 intron CG30116 - chr2R 18477794 intron CG30116 - chr2R 18477840 intron CG30116 - chr2R_5_18475001 chr2R_18475001 RAL-820 561 chr2R 18575802 18575831 chr2R 18581990 18582019 3S18 7 6187 2.0 3.5 2.8 1.8 6217 chr2R 18575802 intron GEFmeso - chr2R 18578910 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-820 562 chr2R 18590866 18590895 chr2R 18600018 18600047 roo 5 9152 1.5 1.0 1.2 2.3 9181 chr2R 18590866 intron GEFmeso - chr2R 18595456 intron GEFmeso - chr2R 18600047 intron GEFmeso - chr2R_5_18595001 chr2R_18595001 RAL-820 563 chr2R 18610964 18610993 chr2R 18611041 18611070 11 76 5.0 3.5 4.2 2.1 106 chr2R 18610964 5` UTR GEFmeso - chr2R 18611017 5` UTR GEFmeso - chr2R 18611070 5` UTR GEFmeso - chr2R_11_18610001 chr2R_18610001 RAL-820 564 chr2R 18692905 18692918 chr2R 18692992 18693005 5 87 3.0 2.0 2.5 1.4 100 chr2R 18692905 intron Sik3 + chr2R 18692955 intron Sik3 + chr2R 18693005 intron Sik3 + chr2R_5_18690001 chr2R_18690001 RAL-820 565 chr2R 18702287 18702306 chr2R 18702367 18702386 8 80 2.0 2.0 2.0 2.7 99 chr2R 18702287 intron Sik3 + chr2R 18702336 intron Sik3 + chr2R 18702386 intron Sik3 + chr2R_8_18700001 chr2R_18700001 RAL-820 566 chr2R 18725975 18725998 chr2R 18726069 18726072 10 92 3.0 4.0 3.5 2.2 97 chr2R 18725975 intron Hs3st-A + chr2R 18726024 intron Hs3st-A + chr2R 18726072 intron Hs3st-A + chr2R_10_18725001 chr2R_18725001 RAL-820 567 chr2R 18830137 18830169 chr2R 18830324 18830358 20 189 2.5 1.5 2.0 6.7 221 chr2R 18830137 intergenic CG15082 +,CG15097 - chr2R 18830248 intergenic CG15082 + chr2R 18830358 5` UTR CG15082 + chr2R_20_18830001 chr2R_18830001 RAL-820 568 chr2R 18900714 18900731 chr2R 18901020 18901037 4 306 3.5 3.0 3.2 1.0 323 chr2R 18900714 intron sano + chr2R 18900876 intron sano + chr2R 18901037 intron sano + chr2R_4_18900001 chr2R_18900001 RAL-820 569 chr2R 18953159 18953174 chr2R 18953246 18953260 4 87 2.5 0.5 1.5 1.6 101 chr2R 18953159 intron sano + chr2R 18953210 intron sano + chr2R 18953260 intron sano + chr2R_4_18950001 chr2R_18950001 RAL-820 570 chr2R 18964918 18964953 chr2R 18964994 18965029 9 76 0.5 2.0 1.2 4.1 111 chr2R 18964918 intergenic not near genes chr2R 18964974 intergenic not near genes chr2R 18965029 intergenic not near genes chr2R_9_18960001 chr2R_18960001 RAL-820 571 chr2R 18989020 18989043 chr2R 18989098 18989121 4 78 1.5 2.0 1.8 1.4 101 chr2R 18989020 intron tn + chr2R 18989070 intron tn + chr2R 18989121 intron tn + chr2R_4_18985001 chr2R_18985001 RAL-820 572 chr2R 19015431 19015463 chr2R 19015519 19015551 12 87 4.0 4.0 4.0 2.4 120 chr2R 19015431 intergenic not near genes chr2R 19015491 intergenic not near genes chr2R 19015551 intergenic not near genes chr2R_12_19015001 chr2R_19015001 RAL-820 573 chr2R 19040724 19040750 chr2R 19040804 19040830 13 80 2.5 1.5 2.0 4.3 106 chr2R 19040724 intergenic not near genes chr2R 19040777 intergenic not near genes chr2R 19040830 intergenic not near genes chr2R_13_19040001 chr2R_19040001 RAL-820 574 chr2R 19073426 19073460 chr2R 19073505 19073539 4 79 1.0 1.0 1.0 2.0 113 chr2R 19073426 intron 5-HT1A + chr2R 19073482 intron 5-HT1A + chr2R 19073539 intron 5-HT1A + chr2R_4_19070001 chr2R_19070001 RAL-820 575 chr2R 19096508 19096526 chr2R 19096659 19096677 5 150 1.5 2.0 1.8 1.8 169 chr2R 19096508 exon 5-HT1A + chr2R 19096592 intron 5-HT1A + chr2R 19096677 intron 5-HT1A + chr2R_5_19095001 chr2R_19095001 RAL-820 576 chr2R 19185641 19185665 chr2R 19185851 19185875 4 210 1.5 1.0 1.2 1.8 234 chr2R 19185641 intron hppy + chr2R 19185758 intron hppy + chr2R 19185875 intron hppy + chr2R_4_19185001 chr2R_19185001 RAL-820 577 chr2R 19251282 19251308 chr2R 19251359 19251388 6 78 3.5 3.0 3.2 1.4 106 chr2R 19251282 exon CG33454 - chr2R 19251335 exon CG33454 - chr2R 19251388 exon CG33454 - chr2R_6_19250001 chr2R_19250001 RAL-820 578 chr2R 19445571 19445585 chr2R 19445656 19445666 7 84 0.5 1.5 1.0 3.5 95 chr2R 19445571 intron EloC - chr2R 19445618 intron EloC - chr2R 19445666 intron EloC - chr2R_7_19445001 chr2R_19445001 RAL-820 579 chr2R 19474995 19475014 chr2R 19475093 19475110 7 95 2.5 1.5 2.0 2.3 115 chr2R 19474995 intron par-1 + chr2R 19475052 intron par-1 + chr2R 19475110 intron par-1 + chr2R_7_19475001 chr2R_19475001 RAL-820 580 chr2R 19534972 19535003 chr2R 19535721 19535752 12 749 3.0 5.5 4.2 2.3 780 chr2R 19534972 intron sm - chr2R 19535362 intron sm - chr2R 19535752 intron sm - chr2R_12_19535001 chr2R_19535001 RAL-820 581 chr2R 19536465 19536500 chr2R 19536547 19536582 9 82 1.0 2.0 1.5 3.6 117 chr2R 19536465 intron sm - chr2R 19536524 intron sm - chr2R 19536582 intron sm - chr2R_9_19535001 chr2R_19535001 RAL-820 582 chr2R 19580577 19580604 chr2R 19580802 19580829 8 225 2.5 2.0 2.2 2.5 252 chr2R 19580577 intron sm - chr2R 19580703 intron sm - chr2R 19580829 intron sm - chr2R_8_19580001 chr2R_19580001 RAL-820 583 chr2R 19644575 19644602 chr2R 19644749 19644749 7 169 3.0 3.5 3.2 1.7 174 chr2R 19644575 intergenic not near genes chr2R 19644662 intergenic not near genes chr2R 19644749 intergenic not near genes chr2R_7_19640001 chr2R_19640001 RAL-820 584 chr2R 19776592 19776625 chr2R 19779915 19779948 jockey 11 3322 3.0 2.5 2.8 2.9 3356 chr2R 19776592 intergenic not near genes chr2R 19778270 intergenic not near genes chr2R 19779948 intergenic not near genes chr2R_11_19775001 chr2R_19775001 RAL-820 585 chr2R 19802672 19802684 chr2R 19802755 19802764 5 82 3.0 0.0 1.5 2.0 92 chr2R 19802672 intergenic not near genes chr2R 19802718 intergenic not near genes chr2R 19802764 intergenic not near genes chr2R_5_19800001 chr2R_19800001 RAL-820 586 chr2R 19807672 19807703 chr2R 19807754 19807785 8 82 1.0 1.5 1.2 3.6 113 chr2R 19807672 intergenic not near genes chr2R 19807728 intergenic not near genes chr2R 19807785 intergenic not near genes chr2R_8_19805001 chr2R_19805001 RAL-820 587 chr2R 19841513 19841537 chr2R 19841592 19841616 5 79 2.0 4.0 3.0 1.2 103 chr2R 19841513 intergenic not near genes chr2R 19841564 intergenic not near genes chr2R 19841616 intergenic not near genes chr2R_5_19840001 chr2R_19840001 RAL-820 588 chr2R 19914846 19914860 chr2R 19922258 19922272 mdg1 5 7412 1.5 1.5 1.5 2.0 7426 chr2R 19914846 intergenic not near genes chr2R 19918559 intergenic not near genes chr2R 19922272 intergenic not near genes chr2R_5_19915001 chr2R_19915001 RAL-820 589 chr2R 19957445 19957462 chr2R 19962647 19962650 copia 5 5199 1.5 3.5 2.5 1.4 5205 chr2R 19957445 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962650 intergenic not near genes chr2R_5_19960001 chr2R_19960001 RAL-820 590 chr2R 20080600 20080620 chr2R 20080677 20080697 6 77 0.0 1.0 0.5 4.0 97 chr2R 20080600 intergenic not near genes chr2R 20080648 intergenic not near genes chr2R 20080697 intergenic not near genes chr2R_6_20080001 chr2R_20080001 RAL-820 591 chr2R 20118878 20118900 chr2R 20118966 20118988 4 88 1.0 1.5 1.2 1.8 110 chr2R 20118878 intergenic not near genes chr2R 20118933 intergenic not near genes chr2R 20118988 intergenic not near genes chr2R_4_20115001 chr2R_20115001 RAL-820 592 chr2R 20162688 20162713 chr2R 20162803 20162830 10 117 3.0 3.0 3.0 2.5 142 chr2R 20162688 intergenic not near genes chr2R 20162759 intergenic not near genes chr2R 20162830 intergenic not near genes chr2R_10_20160001 chr2R_20160001 RAL-820 593 chr2R 20326759 20326793 chr2R 20326836 20326869 4 76 1.5 2.5 2.0 1.3 110 chr2R 20326759 5` UTR MED8 - chr2R 20326814 intergenic MED8 -,CG8929 + chr2R 20326869 intergenic MED8 -,CG8929 + chr2R_4_20325001 chr2R_20325001 RAL-820 594 chr2R 20338757 20338784 chr2R 20338836 20338864 6 80 0.0 0.0 0.0 6.0 107 chr2R 20338757 intergenic not near genes chr2R 20338810 intergenic not near genes chr2R 20338864 intergenic not near genes chr2R_6_20335001 chr2R_20335001 RAL-820 595 chr2R 20441052 20441073 chr2R 20441140 20441161 5 86 0.5 2.5 1.5 2.0 109 chr2R 20441052 intron CG12484 + chr2R 20441106 intron CG12484 + chr2R 20441161 intron CG12484 + chr2R_5_20440001 chr2R_20440001 RAL-820 596 chr2R 20449238 20449252 chr2R 20449314 20449324 5 75 2.0 4.5 3.2 1.2 86 chr2R 20449238 intron CG12484 + chr2R 20449281 intron CG12484 + chr2R 20449324 intron CG12484 + chr2R_5_20445001 chr2R_20445001 RAL-820 597 chr2R 20523043 20523070 chr2R 20523150 20523181 8 108 5.0 5.5 5.2 1.3 138 chr2R 20523043 intergenic not near genes chr2R 20523112 intergenic not near genes chr2R 20523181 intergenic not near genes chr2R_8_20520001 chr2R_20520001 RAL-820 598 chr2R 20671198 20671222 chr2R 20671288 20671308 6 89 2.0 0.0 1.0 3.0 110 chr2R 20671198 intergenic CG30152 +,exu - chr2R 20671253 5` UTR CG30152 + chr2R 20671308 5` UTR CG30152 + chr2R_6_20670001 chr2R_20670001 RAL-820 599 chr2R 20739446 20739475 chr2R 20744214 20744241 F-element 6 4766 1.5 3.0 2.2 1.9 4795 chr2R 20739446 intron dpr + chr2R 20741844 intron dpr + chr2R 20744241 intron dpr + chr2R_6_20740001 chr2R_20740001 RAL-820 600 chr2R 20928771 20928802 chr2R 20928850 20928881 9 75 1.0 2.5 1.8 3.2 110 chr2R 20928771 intron Rx + chr2R 20928826 intron Rx + chr2R 20928881 intron Rx + chr2R_9_20925001 chr2R_20925001 RAL-820 601 chr2R 20962922 20962939 chr2R 20963020 20963036 6 98 1.5 4.0 2.8 1.6 114 chr2R 20962922 intergenic not near genes chr2R 20962979 intergenic not near genes chr2R 20963036 intergenic not near genes chr2R_6_20960001 chr2R_20960001 RAL-820 602 chr2R 21045665 21045684 chr2R 21045963 21045982 8 298 4.0 1.0 2.5 2.3 317 chr2R 21045665 intergenic not near genes chr2R 21045824 intergenic not near genes chr2R 21045982 intergenic not near genes chr2R_8_21045001 chr2R_21045001 RAL-820 603 chr2R 21110179 21110213 chr2R 21110262 21110296 7 82 2.0 1.5 1.8 2.5 117 chr2R 21110179 intron ktub + chr2R 21110238 intron ktub + chr2R 21110296 intron ktub + chr2R_7_21110001 chr2R_21110001 RAL-820 604 chr2R 21110789 21110818 chr2R 21110881 21110911 6 92 5.5 3.5 4.5 1.1 122 chr2R 21110789 intron ktub + chr2R 21110850 intron ktub + chr2R 21110911 intron ktub + chr2R_6_21110001 chr2R_21110001 RAL-820 605 chr2R 21151130 21151137 chr2R 21153763 21153770 opus 4 2633 0.0 0.5 0.2 3.3 2640 chr2R 21151130 intron CG30389 - chr2R 21152450 intron CG30389 - chr2R 21153770 intron CG30389 - chr2R_4_21150001 chr2R_21150001 RAL-820 606 chr2R 21217323 21217331 chr2R 21217410 21217416 4 86 0.5 0.0 0.2 3.3 93 chr2R 21217323 exon CG15661 - chr2R 21217370 5` UTR CG15661 - chr2R 21217416 5` UTR CG15661 - chr2R_4_21215001 chr2R_21215001 RAL-820 607 chr2R 21366528 21366543 chr2R 21366633 21366645 4 104 1.5 2.0 1.8 1.4 117 chr2R 21366528 intron cv-2 - chr2R 21366586 intron cv-2 - chr2R 21366645 intron cv-2 - chr2R_4_21365001 chr2R_21365001 RAL-820 608 chr2R 21543262 21543290 chr2R 21543373 21543398 9 111 2.5 1.0 1.8 3.2 136 chr2R 21543262 intron Egfr + chr2R 21543330 intron Egfr + chr2R 21543398 intron Egfr + chr2R_9_21540001 chr2R_21540001 RAL-820 609 chr2R 21546792 21546804 chr2R 21546873 21546885 4 77 2.5 3.0 2.8 1.1 93 chr2R 21546792 intron Egfr + chr2R 21546838 intron Egfr + chr2R 21546885 intron Egfr + chr2R_4_21545001 chr2R_21545001 RAL-820 610 chr2R 21546807 21546818 chr2R 21546871 21546879 5 69 0.5 3.0 1.8 1.8 72 chr2R 21546807 intron Egfr + chr2R 21546843 intron Egfr + chr2R 21546879 intron Egfr + chr2R_5_21545001 chr2R_21545001 RAL-820 611 chr2R 21571140 21571158 chr2R 21571217 21571240 4 80 3.5 2.5 3.0 1.0 100 chr2R 21571140 intron CG10440 - chr2R 21571190 intron CG10440 - chr2R 21571240 intron CG10440 - chr2R_4_21570001 chr2R_21570001 RAL-820 612 chr2R 21642611 21642632 chr2R 21642691 21642712 4 80 1.0 3.0 2.0 1.3 101 chr2R 21642611 intergenic not near genes chr2R 21642662 intergenic not near genes chr2R 21642712 intergenic not near genes chr2R_4_21640001 chr2R_21640001 RAL-820 613 chr2R 21738275 21738311 chr2R 21747435 21747471 roo 6 9156 1.5 1.5 1.5 2.4 9196 chr2R 21738275 intergenic not near genes chr2R 21742873 intergenic not near genes chr2R 21747471 intergenic not near genes chr2R_6_21740001 chr2R_21740001 RAL-820 614 chr2R 21753084 21753112 chr2R 21753569 21753597 roo 6 481 3.0 2.5 2.8 1.6 513 chr2R 21753084 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753597 intergenic not near genes chr2R_6_21750001 chr2R_21750001 RAL-820 615 chr2R 21796455 21796483 chr2R 21796538 21796567 4 84 2.0 1.5 1.8 1.4 112 chr2R 21796455 5` UTR CG34204 + chr2R 21796511 5` UTR CG34204 + chr2R 21796567 exon CG34204 + chr2R_4_21795001 chr2R_21795001 RAL-820 616 chr2R 21809528 21809542 chr2R 21817768 21817782 roo 5 8240 2.5 5.5 4.0 1.0 8254 chr2R 21809528 intergenic not near genes chr2R 21813655 intergenic not near genes chr2R 21817782 intergenic not near genes chr2R_5_21810001 chr2R_21810001 RAL-820 617 chr2R 21818878 21818903 chr2R 21818965 21818990 4 87 2.0 0.0 1.0 2.0 112 chr2R 21818878 intergenic not near genes chr2R 21818934 intergenic not near genes chr2R 21818990 intergenic not near genes chr2R_4_21815001 chr2R_21815001 RAL-820 618 chr2R 21857352 21857369 chr2R 21857443 21857457 6 90 3.0 3.5 3.2 1.4 105 chr2R 21857352 intergenic not near genes chr2R 21857404 intergenic not near genes chr2R 21857457 intergenic not near genes chr2R_6_21855001 chr2R_21855001 RAL-820 619 chr2R 21876162 21876169 chr2R 21876280 21876287 4 118 3.0 2.5 2.8 1.1 125 chr2R 21876162 intron Fili + chr2R 21876224 intron Fili + chr2R 21876287 intron Fili + chr2R_4_21875001 chr2R_21875001 RAL-820 620 chr2R 21906270 21906286 chr2R 21906371 21906387 4 101 1.5 2.5 2.0 1.3 117 chr2R 21906270 intron Fili + chr2R 21906328 intron Fili + chr2R 21906387 intron Fili + chr2R_4_21905001 chr2R_21905001 RAL-820 621 chr2R 22072697 22072708 chr2R 22072782 22072793 4 85 1.5 3.0 2.2 1.2 96 chr2R 22072697 intron CG11474 - chr2R 22072745 intron CG11474 - chr2R 22072793 intron CG11474 - chr2R_4_22070001 chr2R_22070001 RAL-820 622 chr2R 22095633 22095660 chr2R 22095742 22095769 11 109 1.0 4.0 2.5 3.1 136 chr2R 22095633 intron CG11073 - chr2R 22095701 intron CG11073 - chr2R 22095769 intron CG11073 - chr2R_11_22095001 chr2R_22095001 RAL-820 623 chr2R 22109293 22109316 chr2R 22109369 22109393 7 77 3.5 4.5 4.0 1.4 100 chr2R 22109293 intron Vrp1 - chr2R 22109343 intron Vrp1 - chr2R 22109393 intron Vrp1 - chr2R_7_22105001 chr2R_22105001 RAL-820 624 chr2R 22135436 22135467 chr2R 22135545 22135561 11 105 1.0 2.5 1.8 3.9 125 chr2R 22135436 intergenic not near genes chr2R 22135498 intergenic not near genes chr2R 22135561 intergenic not near genes chr2R_11_22135001 chr2R_22135001 RAL-820 625 chr2R 22185676 22185703 chr2R 22185775 22185802 7 99 2.0 0.0 1.0 3.5 126 chr2R 22185676 3` UTR MED16 + chr2R 22185739 3` UTR MED16 + chr2R 22185802 3` UTR MED16 + chr2R_7_22185001 chr2R_22185001 RAL-820 626 chr2R 22248851 22248873 chr2R 22248924 22248945 7 75 4.0 3.0 3.5 1.6 94 chr2R 22248851 intron dve + chr2R 22248898 intron dve + chr2R 22248945 intron dve + chr2R_7_22245001 chr2R_22245001 RAL-820 627 chr2R 22349691 22349711 chr2R 22351475 22351495 jockey 9 1782 4.0 1.0 2.5 2.6 1804 chr2R 22349691 intron Liprin-gamma - chr2R 22350593 intron Liprin-gamma - chr2R 22351495 intron Liprin-gamma - chr2R_9_22350001 chr2R_22350001 RAL-820 628 chr2R 22360384 22360396 chr2R 22360816 22360829 jockey 4 432 3.5 4.0 3.8 0.8 445 chr2R 22360384 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360829 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-820 629 chr2R 22361665 22361685 chr2R 22361841 22361860 6 176 1.5 3.5 2.5 1.7 195 chr2R 22361665 intron Liprin-gamma - chr2R 22361762 intron Liprin-gamma - chr2R 22361860 intron Liprin-gamma - chr2R_6_22360001 chr2R_22360001 RAL-820 630 chr2R 22377804 22377831 chr2R 22377889 22377916 11 86 1.5 0.0 0.8 6.1 112 chr2R 22377804 3` UTR Rtf1 + chr2R 22377860 3` UTR Rtf1 + chr2R 22377916 3` UTR Rtf1 + chr2R_11_22375001 chr2R_22375001 RAL-820 631 chr2R 22460382 22460401 chr2R 22460461 22460480 4 79 5.0 1.0 3.0 1.0 98 chr2R 22460382 intron CG10384 + chr2R 22460431 intron CG10384 + chr2R 22460480 intron CG10384 + chr2R_4_22460001 chr2R_22460001 RAL-820 632 chr2R 22503871 22503890 chr2R 22504057 22504078 4 188 2.5 0.0 1.2 1.8 207 chr2R 22503871 intron px - chr2R 22503974 intron px - chr2R 22504078 intron px - chr2R_4_22500001 chr2R_22500001 RAL-820 633 chr2R 22525746 22525777 chr2R 22529301 22529332 jockey 8 3555 1.5 3.0 2.2 2.5 3586 chr2R 22525746 intron px - chr2R 22527539 intron px - chr2R 22529332 intron px - chr2R_8_22525001 chr2R_22525001 RAL-820 634 chr2R 22545623 22545651 chr2R 22545702 22545730 5 79 1.5 3.0 2.2 1.6 107 chr2R 22545623 intron px - chr2R 22545676 intron px - chr2R 22545730 intron px - chr2R_5_22545001 chr2R_22545001 RAL-820 635 chr2R 22620843 22620856 chr2R 22620943 22620956 4 100 0.0 3.0 1.5 1.6 113 chr2R 22620843 5` UTR CG33143 + chr2R 22620900 5` UTR CG33143 + chr2R 22620956 5` UTR CG33143 + chr2R_4_22620001 chr2R_22620001 RAL-820 636 chr2R 22646467 22646474 chr2R 22646559 22646566 4 92 0.0 0.0 0.0 4.0 99 chr2R 22646467 intergenic CG2852 -,CG30195 - chr2R 22646516 intergenic CG30195 -,CG2852 - chr2R 22646566 intergenic CG30195 -,CG2852 - chr2R_4_22645001 chr2R_22645001 RAL-820 637 chr2R 22723239 22723266 chr2R 22723316 22723342 5 76 0.0 2.0 1.0 2.5 103 chr2R 22723239 intron jbug - chr2R 22723290 intron jbug - chr2R 22723342 intron jbug - chr2R_5_22720001 chr2R_22720001 RAL-820 638 chr2R 22774964 22774998 chr2R 22775383 22775417 jockey 10 419 2.5 2.5 2.5 2.9 453 chr2R 22774964 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775417 intron CG42260 - chr2R_10_22775001 chr2R_22775001 RAL-820 639 chr2R 22818245 22818276 chr2R 22818384 22818414 7 139 2.0 2.0 2.0 2.3 169 chr2R 22818245 intron CG30271 + chr2R 22818330 intron CG30271 + chr2R 22818414 intron CG30271 + chr2R_7_22815001 chr2R_22815001 RAL-820 640 chr2R 22907415 22907436 chr2R 22907496 22907526 11 86 2.5 3.0 2.8 2.9 111 chr2R 22907415 intron nahoda + chr2R 22907470 intron nahoda + chr2R 22907526 intron nahoda + chr2R_11_22905001 chr2R_22905001 RAL-820 641 chr2R 22912682 22912714 chr2R 22912789 22912820 9 106 1.0 0.5 0.8 5.0 138 chr2R 22912682 exon nahoda + chr2R 22912751 exon nahoda + chr2R 22912820 exon nahoda + chr2R_9_22910001 chr2R_22910001 RAL-820 642 chr2R 22941835 22941852 chr2R 22941913 22941931 4 78 0.0 2.5 1.2 1.8 96 chr2R 22941835 intergenic CG42694 + chr2R 22941883 5` UTR CG42694 + chr2R 22941931 5` UTR CG42694 + chr2R_4_22940001 chr2R_22940001 RAL-820 643 chr2R 22951837 22951861 chr2R 22951923 22951947 7 86 4.0 2.0 3.0 1.8 110 chr2R 22951837 3` UTR CR32835 - chr2R 22951892 3` UTR CR32835 - chr2R 22951947 intron CR32835 - chr2R_7_22950001 chr2R_22950001 RAL-820 644 chr2R 23052649 23052688 chr2R 23052725 23052764 6 76 1.0 1.5 1.2 2.7 115 chr2R 23052649 intergenic not near genes chr2R 23052706 intergenic not near genes chr2R 23052764 intergenic not near genes chr2R_6_23050001 chr2R_23050001 RAL-820 645 chr2R 23061779 23061790 chr2R 23061873 23061884 4 94 2.0 1.5 1.8 1.4 105 chr2R 23061779 3` UTR l(2)06496 - chr2R 23061832 3` UTR l(2)06496 - chr2R 23061884 3` UTR l(2)06496 - chr2R_4_23060001 chr2R_23060001 RAL-820 646 chr2R 23097854 23097884 chr2R 23097945 23097975 10 89 3.0 2.5 2.8 2.6 121 chr2R 23097854 intergenic not near genes chr2R 23097914 intergenic not near genes chr2R 23097975 intergenic not near genes chr2R_10_23095001 chr2R_23095001 RAL-820 647 chr2R 23157399 23157433 chr2R 23157495 23157512 10 93 0.5 1.0 0.8 5.6 113 chr2R 23157399 intron CG9899 + chr2R 23157456 intron CG9899 + chr2R 23157512 intron CG9899 + chr2R_10_23155001 chr2R_23155001 RAL-820 648 chr2R 23175039 23175066 chr2R 23175116 23175143 6 75 0.0 3.0 1.5 2.4 104 chr2R 23175039 intron CG34371 - chr2R 23175091 intron CG34371 - chr2R 23175143 intron CG34371 - chr2R_6_23175001 chr2R_23175001 RAL-820 649 chr2R 23349609 23349641 chr2R 23349875 23349906 13 265 3.5 4.0 3.8 2.7 297 chr2R 23349609 intergenic not near genes chr2R 23349758 intergenic not near genes chr2R 23349906 intergenic not near genes chr2R_13_23345001 chr2R_23345001 RAL-820 650 chr2R 23493667 23493699 chr2R 23493753 23493784 5 82 1.0 2.0 1.5 2.0 117 chr2R 23493667 intergenic not near genes chr2R 23493726 intergenic not near genes chr2R 23493784 intergenic not near genes chr2R_5_23490001 chr2R_23490001 RAL-820 651 chr2R 23508918 23508945 chr2R 23509035 23509062 4 117 1.0 1.0 1.0 2.0 144 chr2R 23508918 intergenic not near genes chr2R 23508990 intergenic not near genes chr2R 23509062 intergenic not near genes chr2R_4_23505001 chr2R_23505001 RAL-820 652 chr2R 23519496 23519527 chr2R 23519597 23519628 4 101 1.5 1.0 1.2 1.8 132 chr2R 23519496 intergenic RabX1 - chr2R 23519562 intergenic RabX1 - chr2R 23519628 intergenic RabX1 - chr2R_4_23515001 chr2R_23515001 RAL-820 653 chr2R 23529572 23529605 chr2R 23537148 23537179 412 7 7570 5.5 4.5 5.0 1.2 7607 chr2R 23529572 intron bw - chr2R 23533376 intron bw - chr2R 23537179 exon bw - chr2R_7_23530001 chr2R_23530001 RAL-820 654 chr2R 23607036 23607164 chr2R 23607117 23607253 10 82 5.5 4.0 4.8 1.7 217 chr2R 23607036 intron CG17664 - chr2R 23607144 intron CG17664 - chr2R 23607253 intron CG17664 - chr2R_10_23605001 chr2R_23605001 RAL-820 655 chr2R 23719796 23719828 chr2R 23719889 23719925 10 96 3.5 3.0 3.2 2.4 129 chr2R 23719796 intron,exon Sesn +,CG18128 - chr2R 23719860 intron,5` UTR Sesn +,CG18128 - chr2R 23719925 intron,5` UTR Sesn +,CG18128 - chr2R_10_23715001 chr2R_23715001 RAL-820 656 chr2R 23744767 23744792 chr2R 23744846 23744871 8 79 3.0 3.0 3.0 2.0 104 chr2R 23744767 intron egl - chr2R 23744819 intron egl - chr2R 23744871 intron egl - chr2R_8_23740001 chr2R_23740001 RAL-820 657 chr2R 23784475 23784506 chr2R 23784552 23784583 4 77 1.0 1.5 1.2 1.8 108 chr2R 23784475 intron CG9850 - chr2R 23784529 intron CG9850 - chr2R 23784583 intron CG9850 - chr2R_4_23780001 chr2R_23780001 RAL-820 658 chr2R 23986514 23986540 chr2R 23986594 23986617 6 79 0.0 1.5 0.8 3.3 103 chr2R 23986514 intron Phm - chr2R 23986566 intron Phm - chr2R 23986617 intron,5` UTR Phm -,CG30178 + chr2R_6_23985001 chr2R_23985001 RAL-820 659 chr2R 24031385 24031406 chr2R 24031469 24031490 6 84 5.5 3.5 4.5 1.1 105 chr2R 24031385 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031490 intergenic Chi -,CG30172 - chr2R_6_24030001 chr2R_24030001 RAL-820 660 chr2R 24147066 24147098 chr2R 24154644 24154674 412 8 7578 2.5 5.5 4.0 1.6 7608 chr2R 24147066 intron Dat + chr2R 24150870 intron Dat + chr2R 24154674 intron Dat + chr2R_8_24150001 chr2R_24150001 RAL-820 661 chr2R 24177234 24177265 chr2R 24184719 24184750 412 9 7484 2.5 3.5 3.0 2.2 7516 chr2R 24177234 3` UTR Nop60B + chr2R 24180992 intron Nop60B + chr2R 24184750 3` UTR Nop60B + chr2R_9_24180001 chr2R_24180001 RAL-820 662 chr2R 24353430 24353459 chr2R 24361792 24361821 roo 5 8362 2.0 4.5 3.2 1.2 8391 chr2R 24353430 intron,intron bs +,CR44811 - chr2R 24357626 intron,intron bs +,CR44811 - chr2R 24361821 intron,intron bs +,CR44811 - chr2R_5_24355001 chr2R_24355001 RAL-820 663 chr2R 24456064 24456094 chr2R 24456144 24456174 8 80 3.0 1.5 2.2 2.5 110 chr2R 24456064 intron CG13579 + chr2R 24456119 intron CG13579 + chr2R 24456174 intron CG13579 + chr2R_8_24455001 chr2R_24455001 RAL-820 664 chr2R 24509316 24509340 chr2R 24509401 24509425 6 84 3.0 3.0 3.0 1.5 109 chr2R 24509316 intergenic Letm1 - chr2R 24509370 intergenic Letm1 - chr2R 24509425 intergenic Letm1 - chr2R_6_24505001 chr2R_24505001 RAL-820 665 chr2R 24702183 24702207 chr2R 24702276 24702300 9 93 2.0 4.0 3.0 2.2 117 chr2R 24702183 intron Mid1 - chr2R 24702242 intron Mid1 - chr2R 24702300 intron Mid1 - chr2R_9_24700001 chr2R_24700001 RAL-820 666 chr2R 24727887 24727904 chr2R 24735395 24735412 mdg1 8 7508 2.5 6.5 4.5 1.5 7525 chr2R 24727887 intron Mid1 - chr2R 24731650 intron Mid1 - chr2R 24735412 intron Mid1 - chr2R_8_24730001 chr2R_24730001 RAL-820 667 chr2R 24727905 24727915 chr2R 24735391 24735421 mdg1 5 7503 1.5 6.0 3.8 1.0 7516 chr2R 24727905 intron Mid1 - chr2R 24731663 intron Mid1 - chr2R 24735421 intron Mid1 - chr2R_5_24730001 chr2R_24730001 RAL-820 668 chr2R 24763612 24763643 chr2R 24765586 24765616 G2 14 1974 6.0 4.0 5.0 2.3 2004 chr2R 24763612 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765616 exon CG3894 + chr2R_14_24760001 chr2R_24760001 RAL-820 669 chr2R 24813413 24813445 chr2R 24813511 24813543 7 98 2.0 1.5 1.8 2.5 130 chr2R 24813413 intergenic not near genes chr2R 24813478 intergenic not near genes chr2R 24813543 intergenic not near genes chr2R_7_24810001 chr2R_24810001 RAL-820 670 chr2R 24859841 24859858 chr2R 24859927 24859944 6 85 4.5 2.0 3.2 1.4 103 chr2R 24859841 5` UTR CR44829 + chr2R 24859892 5` UTR CR44829 + chr2R 24859944 5` UTR CR44829 + chr2R_6_24855001 chr2R_24855001 RAL-820 671 chr2R 24884051 24884077 chr2R 24884133 24884159 12 80 1.5 1.5 1.5 4.8 108 chr2R 24884051 intron NKAIN + chr2R 24884105 intron NKAIN + chr2R 24884159 intron NKAIN + chr2R_12_24880001 chr2R_24880001 RAL-820 672 chr2R 25014546 25014571 chr2R 25014622 25014647 11 76 1.5 4.0 2.8 2.9 101 chr2R 25014546 intron uzip + chr2R 25014596 intron uzip + chr2R 25014647 intron uzip + chr2R_11_25010001 chr2R_25010001 RAL-820 673 chr2R 25018354 25018375 chr2R 25018452 25018476 4 100 1.5 4.5 3.0 1.0 122 chr2R 25018354 intron uzip + chr2R 25018415 intron uzip + chr2R 25018476 intron uzip + chr2R_4_25015001 chr2R_25015001 RAL-820 674 chr2R 25022644 25022671 chr2R 25022728 25022753 8 84 2.5 1.5 2.0 2.7 109 chr2R 25022644 intron uzip + chr2R 25022698 intron uzip + chr2R 25022753 intron uzip + chr2R_8_25020001 chr2R_25020001 RAL-820 675 chr2R 25081606 25081627 chr2R 25082702 25082723 5 1094 2.0 5.0 3.5 1.1 1117 chr2R 25081606 intron gol - chr2R 25082164 intron gol - chr2R 25082723 intron gol - chr2R_5_25080001 chr2R_25080001 RAL-820 676 chr2R 25101278 25101296 chr2R 25101380 25101398 5 102 3.0 2.5 2.8 1.3 120 chr2R 25101278 intron lov - chr2R 25101338 intron lov - chr2R 25101398 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-820 677 chr2R 25104775 25104809 chr2R 25104900 25104933 6 125 1.0 0.5 0.8 3.3 158 chr2R 25104775 intron lov - chr2R 25104854 intron lov - chr2R 25104933 intron lov - chr2R_6_25100001 chr2R_25100001 RAL-820 678 chr2R 25141652 25141681 chr2R 25159342 25159371 roo 5 17690 1.5 1.5 1.5 2.0 17719 chr2R 25141652 intergenic not near genes chr2R 25150512 intergenic not near genes chr2R 25159371 intergenic not near genes chr2R_5_25150001 chr2R_25150001 RAL-820 679 chr2R 25201233 25201253 chr2R 25201359 25201379 4 126 0.5 1.0 0.8 2.2 146 chr2R 25201233 intron CG9380 - chr2R 25201306 intron CG9380 - chr2R 25201379 intron CG9380 - chr2R_4_25200001 chr2R_25200001 RAL-820 680 chr3L 110227 110243 chr3L 119394 119410 roo 4 9167 2.0 5.5 3.8 0.8 9183 chr3L 110227 intergenic not near genes chr3L 114818 intergenic not near genes chr3L 119410 intergenic not near genes chr3L_4_110001 chr3L_110001 RAL-820 681 chr3L 365528 365556 chr3L 365614 365642 6 86 4.0 2.0 3.0 1.5 114 chr3L 365528 3` UTR CG1233 + chr3L 365585 3` UTR CG1233 + chr3L 365642 3` UTR CG1233 + chr3L_6_365001 chr3L_365001 RAL-820 682 chr3L 390964 390982 chr3L 391070 391088 4 106 4.5 3.5 4.0 0.8 124 chr3L 390964 intron trh - chr3L 391026 intron trh - chr3L 391088 intron trh - chr3L_4_390001 chr3L_390001 RAL-820 683 chr3L 402689 402716 chr3L 409742 409769 297 9 7053 1.5 4.5 3.0 2.2 7080 chr3L 402689 intergenic not near genes chr3L 406229 intergenic not near genes chr3L 409769 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-820 684 chr3L 514280 514300 chr3L 514357 514377 10 77 4.0 4.5 4.2 1.9 97 chr3L 514280 intron klar - chr3L 514328 intron klar - chr3L 514377 intron klar - chr3L_10_510001 chr3L_510001 RAL-820 685 chr3L 530946 530971 chr3L 531052 531076 8 106 6.0 2.0 4.0 1.6 130 chr3L 530946 intron klar - chr3L 531011 intron klar - chr3L 531076 intron klar - chr3L_8_530001 chr3L_530001 RAL-820 686 chr3L 642481 642492 chr3L 642572 642583 4 91 4.0 3.5 3.8 0.8 102 chr3L 642481 5` UTR CR43334 + chr3L 642532 5` UTR CR43334 + chr3L 642583 5` UTR CR43334 + chr3L_4_640001 chr3L_640001 RAL-820 687 chr3L 702014 702043 chr3L 702144 702173 11 130 1.5 3.0 2.2 3.4 159 chr3L 702014 intergenic not near genes chr3L 702094 intergenic not near genes chr3L 702173 intergenic not near genes chr3L_11_700001 chr3L_700001 RAL-820 688 chr3L 704360 704375 chr3L 704448 704464 4 88 2.0 3.0 2.5 1.1 104 chr3L 704360 intergenic not near genes chr3L 704412 intergenic not near genes chr3L 704464 intergenic not near genes chr3L_4_700001 chr3L_700001 RAL-820 689 chr3L 858000 858031 chr3L 866478 866512 Tirant 12 8479 4.0 4.5 4.2 2.3 8512 chr3L 858000 intergenic not near genes chr3L 862256 intergenic not near genes chr3L 866512 5` UTR CG12502 + chr3L_12_860001 chr3L_860001 RAL-820 690 chr3L 922173 922184 chr3L 922250 922260 5 76 5.5 0.5 3.0 1.2 87 chr3L 922173 intron Glut1 + chr3L 922216 intron Glut1 + chr3L 922260 intron Glut1 + chr3L_5_920001 chr3L_920001 RAL-820 691 chr3L 925175 925206 chr3L 932601 932628 mdg1 8 7426 3.0 2.5 2.8 2.1 7453 chr3L 925175 intron Glut1 + chr3L 928902 intron Glut1 + chr3L 932628 intron Glut1 + chr3L_8_925001 chr3L_925001 RAL-820 692 chr3L 933910 933942 chr3L 934013 934045 7 103 0.5 2.0 1.2 3.2 135 chr3L 933910 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934045 intron Glut1 + chr3L_7_930001 chr3L_930001 RAL-820 693 chr3L 939770 939802 chr3L 940891 940923 jockey 8 1121 6.5 3.5 5.0 1.3 1153 chr3L 939770 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940923 intron Glut1 + chr3L_8_940001 chr3L_940001 RAL-820 694 chr3L 949895 949920 chr3L 949979 950005 7 85 2.5 5.0 3.8 1.5 110 chr3L 949895 intron Glut1 + chr3L 949950 intron Glut1 + chr3L 950005 intron Glut1 + chr3L_7_945001 chr3L_945001 RAL-820 695 chr3L 1010999 1011023 chr3L 1011080 1011104 7 81 2.0 2.0 2.0 2.3 105 chr3L 1010999 intron trio - chr3L 1011052 intron trio - chr3L 1011104 intron trio - chr3L_7_1010001 chr3L_1010001 RAL-820 696 chr3L 1015027 1015055 chr3L 1015138 1015166 7 111 2.5 1.5 2.0 2.3 139 chr3L 1015027 intron trio - chr3L 1015096 intron trio - chr3L 1015166 intron trio - chr3L_7_1015001 chr3L_1015001 RAL-820 697 chr3L 1031576 1031609 chr3L 1031652 1031684 10 74 1.0 2.5 1.8 3.6 108 chr3L 1031576 intron trio - chr3L 1031630 intron trio - chr3L 1031684 intron trio - chr3L_10_1030001 chr3L_1030001 RAL-820 698 chr3L 1040550 1040580 chr3L 1040634 1040664 14 84 3.0 2.5 2.8 3.7 114 chr3L 1040550 intron bab1 - chr3L 1040607 intron bab1 - chr3L 1040664 intron bab1 - chr3L_14_1040001 chr3L_1040001 RAL-820 699 chr3L 1109634 1109667 chr3L 1109722 1109755 7 87 0.0 4.0 2.0 2.3 121 chr3L 1109634 intergenic not near genes chr3L 1109694 intergenic not near genes chr3L 1109755 intergenic not near genes chr3L_7_1105001 chr3L_1105001 RAL-820 700 chr3L 1154131 1154156 chr3L 1163281 1163306 roo 5 9150 2.5 1.0 1.8 1.8 9175 chr3L 1154131 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163306 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-820 701 chr3L 1179045 1179049 chr3L 1179122 1179126 4 78 3.0 1.5 2.2 1.2 81 chr3L 1179045 intergenic not near genes chr3L 1179086 intergenic not near genes chr3L 1179126 intergenic not near genes chr3L_4_1175001 chr3L_1175001 RAL-820 702 chr3L 1219596 1219624 chr3L 1227329 1227356 412 7 7732 4.0 3.5 3.8 1.5 7760 chr3L 1219596 intron mwh + chr3L 1223476 intron mwh + chr3L 1227356 intron mwh + chr3L_7_1220001 chr3L_1220001 RAL-820 703 chr3L 1251832 1251840 chr3L 1251908 1251916 4 76 0.0 0.0 0.0 4.0 84 chr3L 1251832 intergenic CG9129 +,CG9130 +,CG9133 + chr3L 1251874 intergenic CG9129 +,CG9130 +,CG9133 + chr3L 1251916 intergenic CG9130 +,CG9133 +,CG9129 + chr3L_4_1250001 chr3L_1250001 RAL-820 704 chr3L 1285213 1285232 chr3L 1285293 1285301 8 79 4.5 2.5 3.5 1.8 88 chr3L 1285213 intron CG32333 + chr3L 1285257 intron CG32333 + chr3L 1285301 intron CG32333 + chr3L_8_1285001 chr3L_1285001 RAL-820 705 chr3L 1310985 1310998 chr3L 1315845 1315871 9 4862 33.0 29.0 31.0 0.3 4886 chr3L 1310985 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315871 exon CG9153 + chr3L_9_1310001 chr3L_1310001 RAL-820 706 chr3L 1347161 1347192 chr3L 1347245 1347273 7 84 2.0 6.5 4.2 1.3 112 chr3L 1347161 intron Ptp61F - chr3L 1347217 intron Ptp61F - chr3L 1347273 intron Ptp61F - chr3L_7_1345001 chr3L_1345001 RAL-820 707 chr3L 1415788 1415807 chr3L 1415870 1415889 8 82 1.5 7.5 4.5 1.5 101 chr3L 1415788 intron Ptp61F - chr3L 1415838 intron Ptp61F - chr3L 1415889 intron Ptp61F - chr3L_8_1415001 chr3L_1415001 RAL-820 708 chr3L 1424764 1424773 chr3L 1430014 1430017 Rt1a 4 5248 0.0 2.0 1.0 2.0 5253 chr3L 1424764 intron Ptp61F - chr3L 1427390 intron Ptp61F - chr3L 1430017 intron Ptp61F - chr3L_4_1425001 chr3L_1425001 RAL-820 709 chr3L 1463415 1463448 chr3L 1463496 1463529 13 79 2.5 3.0 2.8 3.4 114 chr3L 1463415 intron Ptp61F - chr3L 1463472 intron Ptp61F - chr3L 1463529 intron Ptp61F - chr3L_13_1460001 chr3L_1460001 RAL-820 710 chr3L 1479983 1480014 chr3L 1480135 1480166 11 151 2.5 3.5 3.0 2.8 183 chr3L 1479983 intron stet - chr3L 1480074 intron stet - chr3L 1480166 intron stet - chr3L_11_1480001 chr3L_1480001 RAL-820 711 chr3L 1501998 1502015 chr3L 1502079 1502096 6 79 2.0 0.5 1.2 2.7 98 chr3L 1501998 intron pUf68 - chr3L 1502047 intron pUf68 - chr3L 1502096 intron pUf68 - chr3L_6_1500001 chr3L_1500001 RAL-820 712 chr3L 1569521 1569533 chr3L 1569597 1569609 4 76 3.0 4.5 3.8 0.8 88 chr3L 1569521 5` UTR CG12004 + chr3L 1569565 intron CG12004 + chr3L 1569609 intron CG12004 + chr3L_4_1565001 chr3L_1565001 RAL-820 713 chr3L 1639234 1639241 chr3L 1639415 1639422 4 181 0.5 4.0 2.2 1.2 188 chr3L 1639234 5` UTR metl - chr3L 1639328 intergenic metl -,Bgb + chr3L 1639422 intergenic metl -,Bgb + chr3L_4_1635001 chr3L_1635001 RAL-820 714 chr3L 1740866 1740884 chr3L 1741108 1741127 pogo 6 243 4.0 0.0 2.0 2.0 261 chr3L 1740866 intron Gk + chr3L 1740996 intron Gk + chr3L 1741127 intron Gk + chr3L_6_1740001 chr3L_1740001 RAL-820 715 chr3L 1772213 1772232 chr3L 1772303 1772322 5 90 4.0 1.0 2.5 1.4 109 chr3L 1772213 3` UTR CG13933 - chr3L 1772268 3` UTR CG13933 - chr3L 1772322 3` UTR CG13933 - chr3L_5_1770001 chr3L_1770001 RAL-820 716 chr3L 1922456 1922465 chr3L 1922534 1922542 4 78 8.0 5.0 6.5 0.5 86 chr3L 1922456 intron Dbx + chr3L 1922499 intron Dbx + chr3L 1922542 intron Dbx + chr3L_4_1920001 chr3L_1920001 RAL-820 717 chr3L 1988848 1988872 chr3L 1989027 1989029 6 175 2.0 3.5 2.8 1.6 181 chr3L 1988848 intergenic not near genes chr3L 1988938 intergenic not near genes chr3L 1989029 intergenic not near genes chr3L_6_1985001 chr3L_1985001 RAL-820 718 chr3L 2016832 2016867 chr3L 2016918 2016953 5 86 2.0 1.5 1.8 1.8 121 chr3L 2016832 intergenic not near genes chr3L 2016892 intergenic not near genes chr3L 2016953 intergenic not near genes chr3L_5_2015001 chr3L_2015001 RAL-820 719 chr3L 2108258 2108284 chr3L 2113462 2113488 copia 7 5203 1.0 1.5 1.2 3.2 5230 chr3L 2108258 intron sls - chr3L 2110873 intron sls - chr3L 2113488 intron sls - chr3L_7_2110001 chr3L_2110001 RAL-820 720 chr3L 2139206 2139233 chr3L 2139286 2139314 5 81 1.5 2.5 2.0 1.7 108 chr3L 2139206 intron zormin - chr3L 2139260 intron zormin - chr3L 2139314 intron zormin - chr3L_5_2135001 chr3L_2135001 RAL-820 721 chr3L 2218475 2218507 chr3L 2218550 2218583 8 74 2.5 2.0 2.2 2.5 108 chr3L 2218475 intergenic not near genes chr3L 2218529 intergenic not near genes chr3L 2218583 intergenic not near genes chr3L_8_2215001 chr3L_2215001 RAL-820 722 chr3L 2308002 2308019 chr3L 2308108 2308125 8 106 2.0 2.5 2.2 2.5 123 chr3L 2308002 intergenic not near genes chr3L 2308064 intergenic not near genes chr3L 2308125 intergenic not near genes chr3L_8_2305001 chr3L_2305001 RAL-820 723 chr3L 2310504 2310528 chr3L 2310638 2310663 4 135 1.5 2.0 1.8 1.4 159 chr3L 2310504 intergenic not near genes chr3L 2310584 intergenic not near genes chr3L 2310663 intergenic not near genes chr3L_4_2310001 chr3L_2310001 RAL-820 724 chr3L 2330781 2330803 chr3L 2330859 2330881 9 78 1.0 1.0 1.0 4.5 100 chr3L 2330781 intron MsR1 + chr3L 2330831 intron MsR1 + chr3L 2330881 intron MsR1 + chr3L_9_2330001 chr3L_2330001 RAL-820 725 chr3L 2447507 2447537 chr3L 2456663 2456693 roo 7 9156 1.5 2.0 1.8 2.5 9186 chr3L 2447507 intron CG45186 + chr3L 2452100 intron CG45186 + chr3L 2456693 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-820 726 chr3L 2533647 2533670 chr3L 2533729 2533752 10 80 4.5 2.5 3.5 2.2 105 chr3L 2533647 intron Spn - chr3L 2533700 intron Spn - chr3L 2533752 intron Spn - chr3L_10_2530001 chr3L_2530001 RAL-820 727 chr3L 2561527 2561559 chr3L 2561604 2561636 7 77 2.5 1.5 2.0 2.3 109 chr3L 2561527 intron msn - chr3L 2561582 intron msn - chr3L 2561636 intron msn - chr3L_7_2560001 chr3L_2560001 RAL-820 728 chr3L 2631059 2631089 chr3L 2631169 2631199 10 109 3.0 2.0 2.5 2.9 140 chr3L 2631059 intergenic CR45660 - chr3L 2631129 intergenic CR45660 - chr3L 2631199 intergenic not near genes chr3L_10_2630001 chr3L_2630001 RAL-820 729 chr3L 2683942 2683973 chr3L 2684018 2684049 15 76 2.0 2.0 2.0 5.0 107 chr3L 2683942 intron Fife - chr3L 2683996 intron Fife - chr3L 2684049 intron Fife - chr3L_15_2680001 chr3L_2680001 RAL-820 730 chr3L 2747714 2747750 chr3L 2748039 2748075 11 325 0.5 2.0 1.2 5.0 361 chr3L 2747714 intron Mrtf - chr3L 2747894 intron Mrtf - chr3L 2748075 intron Mrtf - chr3L_11_2745001 chr3L_2745001 RAL-820 731 chr3L 2795730 2795744 chr3L 2795852 2795866 4 122 1.0 1.0 1.0 2.0 136 chr3L 2795730 intron CG43444 - chr3L 2795798 intron CG43444 - chr3L 2795866 intron CG43444 - chr3L_4_2795001 chr3L_2795001 RAL-820 732 chr3L 2906065 2906095 chr3L 2906152 2906181 10 87 1.0 2.0 1.5 4.0 116 chr3L 2906065 intron Shab + chr3L 2906123 intron Shab + chr3L 2906181 intron Shab + chr3L_10_2905001 chr3L_2905001 RAL-820 733 chr3L 2927842 2927856 chr3L 2936119 2936133 Tirant 6 8276 1.5 1.5 1.5 2.4 8291 chr3L 2927842 intron Shab + chr3L 2931988 intron Shab + chr3L 2936133 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-820 734 chr3L 3050903 3050920 chr3L 3050990 3051005 5 86 4.5 3.5 4.0 1.0 102 chr3L 3050903 intron CG32485 + chr3L 3050954 intron CG32485 + chr3L 3051005 exon CG32485 + chr3L_5_3050001 chr3L_3050001 RAL-820 735 chr3L 3051747 3051757 chr3L 3051989 3051999 pogo 5 242 5.5 2.0 3.8 1.0 252 chr3L 3051747 3` UTR CG32485 + chr3L 3051873 intergenic CG32485 + chr3L 3051999 intergenic CG32485 + chr3L_5_3050001 chr3L_3050001 RAL-820 736 chr3L 3061299 3061311 chr3L 3069865 3069893 Tirant 5 8579 5.0 4.0 4.5 0.9 8594 chr3L 3061299 intron CG32486 - chr3L 3065596 intron CG32486 - chr3L 3069893 intron CG32486 - chr3L_5_3065001 chr3L_3065001 RAL-820 737 chr3L 3102822 3102848 chr3L 3102907 3102924 6 84 2.5 2.5 2.5 1.7 102 chr3L 3102822 intron Cht7 - chr3L 3102873 intron Cht7 - chr3L 3102924 intron Cht7 - chr3L_6_3100001 chr3L_3100001 RAL-820 738 chr3L 3281442 3281472 chr3L 3281938 3281967 Doc 15 496 4.5 5.0 4.8 2.6 525 chr3L 3281442 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281967 intron CG12017 + chr3L_15_3280001 chr3L_3280001 RAL-820 739 chr3L 3281473 3281474 chr3L 3281934 3281970 Doc 4 487 4.0 4.5 4.2 0.8 497 chr3L 3281473 intron CG12017 + chr3L 3281722 intron CG12017 + chr3L 3281970 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-820 740 chr3L 3314154 3314157 chr3L 3314288 3314291 5 134 7.5 7.0 7.2 0.6 137 chr3L 3314154 intergenic ZnT63C +,Drsl2 + chr3L 3314222 intergenic Drsl2 +,ZnT63C + chr3L 3314291 intergenic Drsl2 +,ZnT63C + chr3L_5_3310001 chr3L_3310001 RAL-820 741 chr3L 3314158 3314170 chr3L 3314285 3314304 7 132 5.5 7.0 6.2 1.0 146 chr3L 3314158 intergenic ZnT63C +,Drsl2 + chr3L 3314231 intergenic Drsl2 +,ZnT63C + chr3L 3314304 intergenic Drsl2 +,ZnT63C + chr3L_7_3310001 chr3L_3310001 RAL-820 742 chr3L 3315979 3316010 chr3L 3316079 3316111 6 101 2.0 1.0 1.5 2.4 132 chr3L 3315979 intergenic Drsl4 + chr3L 3316045 intergenic Drsl4 + chr3L 3316111 intergenic Drsl4 + chr3L_6_3315001 chr3L_3315001 RAL-820 743 chr3L 3341272 3341298 chr3L 3341352 3341378 8 80 2.0 2.5 2.2 2.5 106 chr3L 3341272 intron kst + chr3L 3341325 intron kst + chr3L 3341378 intron kst + chr3L_8_3340001 chr3L_3340001 RAL-820 744 chr3L 3436294 3436316 chr3L 3436373 3436395 5 79 1.5 3.0 2.2 1.6 101 chr3L 3436294 intron eIF5B - chr3L 3436344 intron eIF5B - chr3L 3436395 intron eIF5B - chr3L_5_3435001 chr3L_3435001 RAL-820 745 chr3L 3475077 3475099 chr3L 3475521 3475543 jockey 6 444 2.0 3.0 2.5 1.7 466 chr3L 3475077 intron CG42324 + chr3L 3475310 intron CG42324 + chr3L 3475543 intron CG42324 + chr3L_6_3475001 chr3L_3475001 RAL-820 746 chr3L 3601302 3601318 chr3L 3606613 3606629 copia 5 5311 3.5 2.0 2.8 1.3 5327 chr3L 3601302 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606629 intron Eip63E + chr3L_5_3600001 chr3L_3600001 RAL-820 747 chr3L 3601319 3601328 chr3L 3606609 3606639 copia 4 5301 2.5 0.5 1.5 1.6 5320 chr3L 3601319 intron Eip63E + chr3L 3603979 intron Eip63E + chr3L 3606639 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-820 748 chr3L 3709462 3709467 chr3L 3709544 3709549 4 82 1.5 1.0 1.2 1.8 87 chr3L 3709462 intergenic CR45675 + chr3L 3709506 intergenic not near genes chr3L 3709549 intergenic not near genes chr3L_4_3705001 chr3L_3705001 RAL-820 749 chr3L 3747121 3747154 chr3L 3751171 3751204 5 4050 7.5 19.0 13.2 0.4 4083 chr3L 3747121 intron CG32264 - chr3L 3749162 intron CG32264 - chr3L 3751204 intron CG32264 - chr3L_5_3745001 chr3L_3745001 RAL-820 750 chr3L 3815061 3815080 chr3L 3815142 3815161 6 81 2.5 2.0 2.2 1.9 100 chr3L 3815061 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815111 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815161 intron,intron Scsalpha +,CR43932 - chr3L_6_3815001 chr3L_3815001 RAL-820 751 chr3L 3877460 3877468 chr3L 3877583 3877591 4 123 0.0 3.0 1.5 1.6 131 chr3L 3877460 intergenic not near genes chr3L 3877526 intergenic not near genes chr3L 3877591 intergenic not near genes chr3L_4_3875001 chr3L_3875001 RAL-820 752 chr3L 3890963 3890991 chr3L 3891044 3891072 7 81 0.5 0.0 0.2 5.8 109 chr3L 3890963 intergenic not near genes chr3L 3891018 intergenic not near genes chr3L 3891072 intergenic not near genes chr3L_7_3890001 chr3L_3890001 RAL-820 753 chr3L 4058839 4058859 chr3L 4058919 4058939 5 80 3.0 1.0 2.0 1.7 100 chr3L 4058839 3` UTR CG1136 + chr3L 4058889 3` UTR CG1136 + chr3L 4058939 3` UTR CG1136 + chr3L_5_4055001 chr3L_4055001 RAL-820 754 chr3L 4118637 4118655 chr3L 4118764 4118779 4 126 1.0 1.5 1.2 1.8 142 chr3L 4118637 intron Chd64 - chr3L 4118708 intron Chd64 - chr3L 4118779 intron Chd64 - chr3L_4_4115001 chr3L_4115001 RAL-820 755 chr3L 4291048 4291079 chr3L 4291193 4291213 17 143 5.5 2.0 3.8 3.5 165 chr3L 4291048 exon Hexo1 + chr3L 4291130 exon Hexo1 + chr3L 4291213 3` UTR CG15012 - chr3L_17_4290001 chr3L_4290001 RAL-820 756 chr3L 4328756 4328761 chr3L 4336254 4336259 412 4 7498 1.0 3.5 2.2 1.2 7503 chr3L 4328756 intron Cip4 - chr3L 4332508 intron Cip4 - chr3L 4336259 intron Cip4 - chr3L_4_4330001 chr3L_4330001 RAL-820 757 chr3L 4394643 4394655 chr3L 4394719 4394731 4 76 0.5 2.5 1.5 1.6 88 chr3L 4394643 intron slow + chr3L 4394687 intron slow + chr3L 4394731 intron slow + chr3L_4_4390001 chr3L_4390001 RAL-820 758 chr3L 4607268 4607291 chr3L 4607359 4607382 5 91 1.0 3.5 2.2 1.6 114 chr3L 4607268 intron Src64B - chr3L 4607325 intron Src64B - chr3L 4607382 intron Src64B - chr3L_5_4605001 chr3L_4605001 RAL-820 759 chr3L 4638309 4638337 chr3L 4638439 4638467 5 130 2.0 1.5 1.8 1.8 158 chr3L 4638309 intron axo - chr3L 4638388 intron axo - chr3L 4638467 intron axo - chr3L_5_4635001 chr3L_4635001 RAL-820 760 chr3L 4654190 4654222 chr3L 4654271 4654304 12 81 2.5 1.5 2.0 4.0 114 chr3L 4654190 intron axo - chr3L 4654247 intron axo - chr3L 4654304 intron axo - chr3L_12_4650001 chr3L_4650001 RAL-820 761 chr3L 4674162 4674178 chr3L 4674248 4674264 4 86 2.0 2.5 2.2 1.2 102 chr3L 4674162 intron axo - chr3L 4674213 intron axo - chr3L 4674264 intron axo - chr3L_4_4670001 chr3L_4670001 RAL-820 762 chr3L 4901133 4901160 chr3L 4907323 4907343 diver 9 6189 1.5 4.0 2.8 2.4 6210 chr3L 4901133 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907343 intergenic not near genes chr3L_9_4900001 chr3L_4900001 RAL-820 763 chr3L 5045452 5045477 chr3L 5050233 5050258 Doc 9 4781 2.5 0.5 1.5 3.6 4806 chr3L 5045452 intron Con - chr3L 5047855 intron Con - chr3L 5050258 intron Con - chr3L_9_5045001 chr3L_5045001 RAL-820 764 chr3L 5081858 5081883 chr3L 5081937 5081962 4 78 2.0 4.0 3.0 1.0 104 chr3L 5081858 intergenic not near genes chr3L 5081910 intergenic not near genes chr3L 5081962 intergenic not near genes chr3L_4_5080001 chr3L_5080001 RAL-820 765 chr3L 5104485 5104506 chr3L 5124619 5124640 7 20134 2.5 0.0 1.2 3.2 20155 chr3L 5104485 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124640 intergenic not near genes chr3L_7_5110001 chr3L_5110001 RAL-820 766 chr3L 5164635 5164669 chr3L 5164711 5164744 4 76 3.5 1.0 2.2 1.2 109 chr3L 5164635 intron shep - chr3L 5164690 intron shep - chr3L 5164744 intron shep - chr3L_4_5160001 chr3L_5160001 RAL-820 767 chr3L 5294172 5294207 chr3L 5294321 5294356 14 148 3.0 5.0 4.0 2.8 184 chr3L 5294172 intergenic not near genes chr3L 5294264 intergenic not near genes chr3L 5294356 intergenic not near genes chr3L_14_5290001 chr3L_5290001 RAL-820 768 chr3L 5482944 5483085 chr3L 5483153 5483204 6 133 0.0 0.0 0.0 6.0 260 chr3L 5482944 exon CG4835 + chr3L 5483074 exon CG4835 + chr3L 5483204 exon CG4835 + chr3L_6_5480001 chr3L_5480001 RAL-820 769 chr3L 5492942 5492967 chr3L 5493021 5493033 6 76 1.0 0.0 0.5 4.0 91 chr3L 5492942 intergenic CR44520 - chr3L 5492988 intergenic CR44520 - chr3L 5493033 intergenic CR44520 - chr3L_6_5490001 chr3L_5490001 RAL-820 770 chr3L 5537720 5537744 chr3L 5538062 5538086 jockey 6 342 3.0 1.5 2.2 1.9 366 chr3L 5537720 intergenic not near genes chr3L 5537903 intergenic not near genes chr3L 5538086 intergenic CG10625 - chr3L_6_5535001 chr3L_5535001 RAL-820 771 chr3L 5563563 5563583 chr3L 5563645 5563663 4 80 3.5 4.5 4.0 0.8 100 chr3L 5563563 5` UTR Sucb - chr3L 5563613 5` UTR Sucb - chr3L 5563663 5` UTR Sucb - chr3L_4_5560001 chr3L_5560001 RAL-820 772 chr3L 5910031 5910063 chr3L 5910272 5910304 pogo 7 241 3.0 2.5 2.8 1.8 273 chr3L 5910031 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910304 intron CG13288 + chr3L_7_5910001 chr3L_5910001 RAL-820 773 chr3L 5926319 5926333 chr3L 5926509 5926520 BS 5 188 5.5 5.0 5.2 0.8 201 chr3L 5926319 intron Vap-33B + chr3L 5926420 intron Vap-33B + chr3L 5926520 intron Vap-33B + chr3L_5_5925001 chr3L_5925001 RAL-820 774 chr3L 5926334 5926349 chr3L 5926505 5926506 BS 6 175 5.0 4.5 4.8 1.0 172 chr3L 5926334 intron Vap-33B + chr3L 5926420 intron Vap-33B + chr3L 5926506 intron Vap-33B + chr3L_6_5925001 chr3L_5925001 RAL-820 775 chr3L 5988957 5988970 chr3L 5989046 5989059 5 88 2.5 3.5 3.0 1.2 102 chr3L 5988957 intergenic not near genes chr3L 5989008 intergenic not near genes chr3L 5989059 intergenic not near genes chr3L_5_5985001 chr3L_5985001 RAL-820 776 chr3L 5988971 5988986 chr3L 5989043 5989074 6 85 1.5 3.5 2.5 1.7 103 chr3L 5988971 intergenic not near genes chr3L 5989022 intergenic not near genes chr3L 5989074 intergenic not near genes chr3L_6_5985001 chr3L_5985001 RAL-820 777 chr3L 5992594 5992618 chr3L 5992696 5992720 7 102 2.5 0.0 1.2 3.2 126 chr3L 5992594 intergenic not near genes chr3L 5992657 intergenic not near genes chr3L 5992720 intergenic not near genes chr3L_7_5990001 chr3L_5990001 RAL-820 778 chr3L 6040368 6040381 chr3L 6042724 6042737 Doc 7 2356 1.5 3.0 2.2 2.2 2369 chr3L 6040368 intergenic Jon65Aiv + chr3L 6041552 intergenic not near genes chr3L 6042737 intergenic not near genes chr3L_7_6040001 chr3L_6040001 RAL-820 779 chr3L 6052655 6052673 chr3L 6052729 6052735 7 79 6.5 8.0 7.2 0.9 80 chr3L 6052655 exon Jon65Aii + chr3L 6052695 intron Jon65Aii + chr3L 6052735 exon Jon65Aii + chr3L_7_6050001 chr3L_6050001 RAL-820 780 chr3L 6063940 6063958 chr3L 6064024 6064042 4 84 3.5 4.0 3.8 0.8 102 chr3L 6063940 intergenic not near genes chr3L 6063991 intergenic not near genes chr3L 6064042 intergenic not near genes chr3L_4_6060001 chr3L_6060001 RAL-820 781 chr3L 6159868 6159894 chr3L 6159958 6159984 5 90 2.5 0.5 1.5 2.0 116 chr3L 6159868 intergenic not near genes chr3L 6159926 intergenic not near genes chr3L 6159984 intergenic not near genes chr3L_5_6155001 chr3L_6155001 RAL-820 782 chr3L 6167198 6167214 chr3L 6167296 6167312 8 98 2.0 2.0 2.0 2.7 114 chr3L 6167198 3` UTR CG10289 - chr3L 6167255 3` UTR CG10289 - chr3L 6167312 3` UTR CG10289 - chr3L_8_6165001 chr3L_6165001 RAL-820 783 chr3L 6220924 6220948 chr3L 6230076 6230100 roo 13 9152 1.0 5.5 3.2 3.1 9176 chr3L 6220924 5` UTR pncr008:3L + chr3L 6225512 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_13_6225001 chr3L_6225001 RAL-820 784 chr3L 6231160 6231373 chr3L 6231241 6231458 5 83 0.0 3.0 1.5 2.0 298 chr3L 6231160 intergenic not near genes chr3L 6231309 intergenic CG13299 - chr3L 6231458 intergenic CG13299 - chr3L_5_6230001 chr3L_6230001 RAL-820 785 chr3L 6330858 6330880 chr3L 6330973 6330995 13 115 2.5 5.0 3.8 2.7 137 chr3L 6330858 3` UTR CG13300 - chr3L 6330926 3` UTR CG13300 - chr3L 6330995 3` UTR CG13300 - chr3L_13_6330001 chr3L_6330001 RAL-820 786 chr3L 6335014 6335042 chr3L 6335484 6335513 297 8 471 0.5 6.5 3.5 1.8 499 chr3L 6335014 intron CG13300 - chr3L 6335264 intron CG13300 - chr3L 6335513 intron CG13300 - chr3L_8_6335001 chr3L_6335001 RAL-820 787 chr3L 6405656 6405685 chr3L 6432120 6432149 roo 5 26464 2.0 1.0 1.5 2.0 26493 chr3L 6405656 intron CG42747 + chr3L 6418902 intron CG42747 + chr3L 6432149 intron CG42747 + chr3L_5_6415001 chr3L_6415001 RAL-820 788 chr3L 6619270 6619295 chr3L 6619433 6619458 7 163 1.5 3.5 2.5 2.0 188 chr3L 6619270 intergenic CG8398 + chr3L 6619364 intergenic CG8398 + chr3L 6619458 intergenic CG8398 + chr3L_7_6615001 chr3L_6615001 RAL-820 789 chr3L 6781125 6781148 chr3L 6783138 6783161 Doc 7 2013 2.5 1.5 2.0 2.3 2036 chr3L 6781125 intergenic not near genes chr3L 6782143 intergenic not near genes chr3L 6783161 intergenic not near genes chr3L_7_6780001 chr3L_6780001 RAL-820 790 chr3L 6855933 6855948 chr3L 6860717 6860732 Doc 5 4784 4.0 2.0 3.0 1.2 4799 chr3L 6855933 intergenic not near genes chr3L 6858332 intergenic not near genes chr3L 6860732 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-820 791 chr3L 6887515 6887537 chr3L 6895007 6895029 roo 10 7492 4.0 2.0 3.0 2.5 7514 chr3L 6887515 intergenic not near genes chr3L 6891272 intergenic not near genes chr3L 6895029 intergenic not near genes chr3L_10_6890001 chr3L_6890001 RAL-820 792 chr3L 6974506 6974522 chr3L 6974606 6974623 11 101 0.0 4.5 2.2 3.4 117 chr3L 6974506 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974623 intron Galphai - chr3L_11_6970001 chr3L_6970001 RAL-820 793 chr3L 7024398 7024414 chr3L 7024475 7024491 5 77 2.5 1.0 1.8 1.8 93 chr3L 7024398 intron Mp + chr3L 7024444 intron Mp + chr3L 7024491 intron Mp + chr3L_5_7020001 chr3L_7020001 RAL-820 794 chr3L 7090031 7090059 chr3L 7090105 7090140 6 80 0.5 1.0 0.8 3.3 109 chr3L 7090031 intergenic not near genes chr3L 7090086 intergenic not near genes chr3L 7090140 intergenic not near genes chr3L_6_7090001 chr3L_7090001 RAL-820 795 chr3L 7129972 7129978 chr3L 7130164 7130170 BS 5 192 1.0 5.0 3.0 1.2 198 chr3L 7129972 intergenic CG15829 + chr3L 7130071 intergenic CG15829 + chr3L 7130170 intergenic CG15829 + chr3L_5_7130001 chr3L_7130001 RAL-820 796 chr3L 7154438 7154466 chr3L 7154703 7154731 13 265 15.5 12.5 14.0 0.9 293 chr3L 7154438 intron corn - chr3L 7154584 intron corn - chr3L 7154731 intron corn - chr3L_13_7150001 chr3L_7150001 RAL-820 797 chr3L 7377327 7377348 chr3L 7380429 7380451 297 5 3104 3.0 2.5 2.8 1.3 3124 chr3L 7377327 intron SMSr - chr3L 7378889 intron SMSr - chr3L 7380451 intron SMSr - chr3L_5_7375001 chr3L_7375001 RAL-820 798 chr3L 7462939 7462951 chr3L 7463047 7463059 4 107 0.0 2.0 1.0 2.0 120 chr3L 7462939 intergenic not near genes chr3L 7462999 intergenic not near genes chr3L 7463059 intergenic not near genes chr3L_4_7460001 chr3L_7460001 RAL-820 799 chr3L 7498759 7498771 chr3L 7503536 7503548 F-element 4 4777 3.0 0.5 1.8 1.4 4789 chr3L 7498759 5` UTR CG8539 - chr3L 7501154 intergenic not near genes chr3L 7503548 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-820 800 chr3L 7508691 7508704 chr3L 7508769 7508788 4 82 2.0 2.0 2.0 1.3 97 chr3L 7508691 intergenic not near genes chr3L 7508740 intergenic not near genes chr3L 7508788 intergenic not near genes chr3L_4_7505001 chr3L_7505001 RAL-820 801 chr3L 7561876 7561890 chr3L 7561952 7561966 5 76 0.0 2.5 1.2 2.3 90 chr3L 7561876 intergenic not near genes chr3L 7561921 intergenic not near genes chr3L 7561966 intergenic not near genes chr3L_5_7560001 chr3L_7560001 RAL-820 802 chr3L 7640724 7640743 chr3L 7640848 7640867 5 124 1.5 6.0 3.8 1.0 143 chr3L 7640724 intergenic CG7506 -,CG33276 - chr3L 7640796 intergenic CG7506 -,CG33276 - chr3L 7640867 exon CG7506 - chr3L_5_7640001 chr3L_7640001 RAL-820 803 chr3L 7642747 7642782 chr3L 7642834 7642869 9 87 2.5 1.5 2.0 3.0 122 chr3L 7642747 intergenic not near genes chr3L 7642808 intergenic not near genes chr3L 7642869 intergenic not near genes chr3L_9_7640001 chr3L_7640001 RAL-820 804 chr3L 7760083 7760108 chr3L 7760159 7760184 7 76 2.5 2.0 2.2 2.2 101 chr3L 7760083 intergenic Hn + chr3L 7760134 intergenic Hn + chr3L 7760184 intergenic Hn + chr3L_7_7760001 chr3L_7760001 RAL-820 805 chr3L 7761430 7761458 chr3L 7761507 7761535 6 77 2.0 1.0 1.5 2.4 105 chr3L 7761430 intron Hn + chr3L 7761482 intron Hn + chr3L 7761535 intron Hn + chr3L_6_7760001 chr3L_7760001 RAL-820 806 chr3L 7793713 7793739 chr3L 7800765 7800791 297 5 7052 2.0 2.0 2.0 1.7 7078 chr3L 7793713 intron CG32369 - chr3L 7797252 intron CG32369 - chr3L 7800791 intron CG32369 - chr3L_5_7795001 chr3L_7795001 RAL-820 807 chr3L 7886530 7886547 chr3L 7889048 7889065 Stalker4 5 2518 0.0 2.5 1.2 2.3 2535 chr3L 7886530 intron CG32365 + chr3L 7887798 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-820 808 chr3L 8014416 8014450 chr3L 8014498 8014532 5 81 1.5 1.0 1.2 2.3 116 chr3L 8014416 intron nmo + chr3L 8014474 intron nmo + chr3L 8014532 intron nmo + chr3L_5_8010001 chr3L_8010001 RAL-820 809 chr3L 8317596 8317596 chr3L 22908066 22908067 4 14590470 1.5 8.0 4.8 0.7 14590471 chr3L 8317596 intergenic not near genes chr3L 15612832 intergenic CG13449 -,comm3 - chr3L 22908067 intergenic not near genes chr3L_4_15610001 chr3L_15610001 RAL-820 810 chr3L 8481772 8481805 chr3L 8490929 8490962 roo 7 9157 1.0 3.0 2.0 2.3 9190 chr3L 8481772 intron CG43163 - chr3L 8486367 intron CG43163 - chr3L 8490962 intron CG43163 - chr3L_7_8485001 chr3L_8485001 RAL-820 811 chr3L 8498306 8498327 chr3L 8505773 8505794 blood 6 7466 4.0 3.0 3.5 1.3 7488 chr3L 8498306 intron CG43163 - chr3L 8502050 intron CG43163 - chr3L 8505794 intron CG43163 - chr3L_6_8500001 chr3L_8500001 RAL-820 812 chr3L 8584923 8584941 chr3L 8585017 8585034 6 94 0.5 3.5 2.0 2.0 111 chr3L 8584923 intron CG43078 + chr3L 8584978 intron CG43078 + chr3L 8585034 intron CG43078 + chr3L_6_8580001 chr3L_8580001 RAL-820 813 chr3L 8591256 8591283 chr3L 8591389 8591420 9 132 3.0 3.5 3.2 2.1 164 chr3L 8591256 intron CG43078 + chr3L 8591338 intron CG43078 + chr3L 8591420 intron CG43078 + chr3L_9_8590001 chr3L_8590001 RAL-820 814 chr3L 8643575 8643605 chr3L 8643651 8643681 5 76 2.0 2.0 2.0 1.7 106 chr3L 8643575 3` UTR Cpr66D + chr3L 8643628 intergenic Cpr66D + chr3L 8643681 intergenic Cpr66D + chr3L_5_8640001 chr3L_8640001 RAL-820 815 chr3L 8707670 8707699 chr3L 8707914 8707941 7 243 1.5 2.0 1.8 2.5 271 chr3L 8707670 intergenic not near genes chr3L 8707806 intergenic not near genes chr3L 8707941 intergenic not near genes chr3L_7_8705001 chr3L_8705001 RAL-820 816 chr3L 8755382 8755408 chr3L 8755664 8755691 4 281 1.5 2.5 2.0 1.3 309 chr3L 8755382 intron Fhos + chr3L 8755536 intron Fhos + chr3L 8755691 intron Fhos + chr3L_4_8755001 chr3L_8755001 RAL-820 817 chr3L 8830796 8830816 chr3L 8830876 8830896 5 80 1.5 0.5 1.0 2.5 100 chr3L 8830796 intron dally + chr3L 8830846 intron dally + chr3L 8830896 intron dally + chr3L_5_8830001 chr3L_8830001 RAL-820 818 chr3L 8849216 8849241 chr3L 8849296 8849321 6 80 2.0 1.5 1.8 2.1 105 chr3L 8849216 intron dally + chr3L 8849268 intron dally + chr3L 8849321 intron dally + chr3L_6_8845001 chr3L_8845001 RAL-820 819 chr3L 9003945 9003967 chr3L 9004029 9004052 7 85 3.0 2.0 2.5 2.0 107 chr3L 9003945 intergenic not near genes chr3L 9003998 intergenic not near genes chr3L 9004052 intergenic not near genes chr3L_7_9000001 chr3L_9000001 RAL-820 820 chr3L 9076930 9076957 chr3L 9084490 9084517 412 7 7559 2.0 1.5 1.8 2.5 7587 chr3L 9076930 exon Tequila + chr3L 9080724 intron Tequila + chr3L 9084517 exon Tequila + chr3L_7_9080001 chr3L_9080001 RAL-820 821 chr3L 9130559 9130580 chr3L 9134320 9134340 412 9 3761 7.0 5.5 6.2 1.2 3781 chr3L 9130559 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_9_9130001 chr3L_9130001 RAL-820 822 chr3L 9164695 9164730 chr3L 9166162 9166197 hobo 5 1466 1.0 0.5 0.8 2.8 1502 chr3L 9164695 intron Rdl - chr3L 9165446 intron Rdl - chr3L 9166197 intron Rdl - chr3L_5_9165001 chr3L_9165001 RAL-820 823 chr3L 9219239 9219274 chr3L 9219911 9219946 jockey 6 672 3.0 4.5 3.8 1.2 707 chr3L 9219239 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219946 intergenic not near genes chr3L_6_9215001 chr3L_9215001 RAL-820 824 chr3L 9309090 9309114 chr3L 9309204 9309228 6 114 1.5 0.5 1.0 3.0 138 chr3L 9309090 intergenic not near genes chr3L 9309159 intergenic not near genes chr3L 9309228 intergenic not near genes chr3L_6_9305001 chr3L_9305001 RAL-820 825 chr3L 9348474 9348705 chr3L 9348976 9349065 4 466 0.0 0.0 0.0 4.0 591 chr3L 9348474 intergenic PGRP-LC + chr3L 9348770 intergenic PGRP-LC + chr3L 9349065 intergenic not near genes chr3L_4_9345001 chr3L_9345001 RAL-820 826 chr3L 9498216 9498231 chr3L 9498293 9498308 4 77 1.0 2.0 1.5 1.6 92 chr3L 9498216 intron path - chr3L 9498262 intron path - chr3L 9498308 intron path - chr3L_4_9495001 chr3L_9495001 RAL-820 827 chr3L 9563922 9563950 chr3L 9564014 9564042 6 92 0.0 1.5 0.8 3.3 120 chr3L 9563922 intron CG42673 + chr3L 9563982 intron CG42673 + chr3L 9564042 intron CG42673 + chr3L_6_9560001 chr3L_9560001 RAL-820 828 chr3L 9571899 9571928 chr3L 9572247 9572271 jockey 5 347 1.5 2.0 1.8 1.8 372 chr3L 9571899 intron CG42673 + chr3L 9572085 intron CG42673 + chr3L 9572271 intron CG42673 + chr3L_5_9570001 chr3L_9570001 RAL-820 829 chr3L 9575910 9575943 chr3L 9580989 9581023 jockey 6 5079 1.5 2.0 1.8 2.1 5113 chr3L 9575910 intron CG42673 + chr3L 9578466 intron CG42673 + chr3L 9581023 intron CG42673 + chr3L_6_9575001 chr3L_9575001 RAL-820 830 chr3L 9584406 9584424 chr3L 9584488 9584506 4 82 0.0 3.0 1.5 1.6 100 chr3L 9584406 intron CG42673 + chr3L 9584456 intron CG42673 + chr3L 9584506 intron CG42673 + chr3L_4_9580001 chr3L_9580001 RAL-820 831 chr3L 9831710 9831736 chr3L 9831791 9831817 7 81 1.0 1.5 1.2 3.2 107 chr3L 9831710 intron CG43897 + chr3L 9831764 intron CG43897 + chr3L 9831817 intron CG43897 + chr3L_7_9830001 chr3L_9830001 RAL-820 832 chr3L 9918888 9918911 chr3L 9918977 9919005 4 93 4.0 1.0 2.5 1.1 117 chr3L 9918888 intron CG34356 + chr3L 9918946 intron CG34356 + chr3L 9919005 intron CG34356 + chr3L_4_9915001 chr3L_9915001 RAL-820 833 chr3L 9929672 9929698 chr3L 9938452 9938478 roo 4 8778 2.0 1.5 1.8 1.4 8806 chr3L 9929672 intron CG34356 + chr3L 9934075 intron CG34356 + chr3L 9938478 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-820 834 chr3L 9980272 9980282 chr3L 9980353 9980372 4 87 5.5 2.5 4.0 0.8 100 chr3L 9980272 intron dpr6 + chr3L 9980322 intron dpr6 + chr3L 9980372 intron dpr6 + chr3L_4_9980001 chr3L_9980001 RAL-820 835 chr3L 10003164 10003181 chr3L 10003261 10003278 6 97 2.0 2.5 2.2 1.9 114 chr3L 10003164 intron dpr6 + chr3L 10003221 intron dpr6 + chr3L 10003278 intron dpr6 + chr3L_6_10000001 chr3L_10000001 RAL-820 836 chr3L 10004088 10004097 chr3L 10004168 10004176 5 80 3.5 1.5 2.5 1.4 88 chr3L 10004088 exon dpr6 + chr3L 10004132 intron dpr6 + chr3L 10004176 intron dpr6 + chr3L_5_10000001 chr3L_10000001 RAL-820 837 chr3L 10020892 10020913 chr3L 10020977 10021006 9 92 0.5 5.0 2.8 2.4 114 chr3L 10020892 intron dpr6 + chr3L 10020949 intron dpr6 + chr3L 10021006 intron dpr6 + chr3L_9_10020001 chr3L_10020001 RAL-820 838 chr3L 10130230 10130256 chr3L 10130311 10130336 6 80 3.5 3.0 3.2 1.4 106 chr3L 10130230 intron dpr6 + chr3L 10130283 intron dpr6 + chr3L 10130336 intron dpr6 + chr3L_6_10130001 chr3L_10130001 RAL-820 839 chr3L 10214815 10214827 chr3L 10214917 10214929 4 102 2.0 1.5 1.8 1.4 114 chr3L 10214815 intergenic not near genes chr3L 10214872 intergenic not near genes chr3L 10214929 intergenic not near genes chr3L_4_10210001 chr3L_10210001 RAL-820 840 chr3L 10298674 10298701 chr3L 10298759 10298788 8 87 0.5 0.5 0.5 5.3 114 chr3L 10298674 intergenic not near genes chr3L 10298731 intergenic not near genes chr3L 10298788 intergenic not near genes chr3L_8_10295001 chr3L_10295001 RAL-820 841 chr3L 10308752 10308770 chr3L 10308829 10308847 8 77 2.0 4.5 3.2 1.9 95 chr3L 10308752 intergenic not near genes chr3L 10308800 intergenic not near genes chr3L 10308847 intergenic not near genes chr3L_8_10305001 chr3L_10305001 RAL-820 842 chr3L 10414929 10414975 chr3L 10417313 10417347 Doc 6 2374 0.0 3.0 1.5 2.4 2418 chr3L 10414929 intergenic CG12362 + chr3L 10416138 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-820 843 chr3L 10417567 10417601 chr3L 10417644 10417678 9 76 2.5 1.0 1.8 3.2 111 chr3L 10417567 intergenic not near genes chr3L 10417622 intergenic not near genes chr3L 10417678 intergenic not near genes chr3L_9_10415001 chr3L_10415001 RAL-820 844 chr3L 10456743 10456767 chr3L 10456834 10456858 5 91 1.5 2.0 1.8 1.8 115 chr3L 10456743 intergenic not near genes chr3L 10456800 intergenic not near genes chr3L 10456858 intergenic not near genes chr3L_5_10455001 chr3L_10455001 RAL-820 845 chr3L 10485081 10485111 chr3L 10485243 10485273 4 160 1.5 1.0 1.2 1.8 192 chr3L 10485081 intron A2bp1 + chr3L 10485177 intron A2bp1 + chr3L 10485273 intron A2bp1 + chr3L_4_10485001 chr3L_10485001 RAL-820 846 chr3L 10526639 10526645 chr3L 10526717 10526726 6 80 1.0 1.5 1.2 2.7 87 chr3L 10526639 intron A2bp1 + chr3L 10526682 intron A2bp1 + chr3L 10526726 intron A2bp1 + chr3L_6_10525001 chr3L_10525001 RAL-820 847 chr3L 10621848 10621876 chr3L 10621935 10621963 4 87 0.0 0.5 0.2 3.3 115 chr3L 10621848 intergenic not near genes chr3L 10621906 intergenic not near genes chr3L 10621963 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-820 848 chr3L 10658079 10658211 chr3L 10658156 10658338 12 105 1.0 1.0 1.0 6.0 259 chr3L 10658079 intron CG32066 - chr3L 10658208 intron CG32066 - chr3L 10658338 intron CG32066 - chr3L_12_10655001 chr3L_10655001 RAL-820 849 chr3L 10748734 10748768 chr3L 10748826 10748860 12 92 1.0 3.0 2.0 4.0 126 chr3L 10748734 intergenic not near genes chr3L 10748797 intergenic not near genes chr3L 10748860 intergenic not near genes chr3L_12_10745001 chr3L_10745001 RAL-820 850 chr3L 10762839 10762863 chr3L 10762916 10762947 4 82 1.0 0.5 0.8 2.2 108 chr3L 10762839 intergenic not near genes chr3L 10762893 intergenic not near genes chr3L 10762947 intergenic not near genes chr3L_4_10760001 chr3L_10760001 RAL-820 851 chr3L 10778821 10778828 chr3L 10778897 10778904 5 76 0.0 4.0 2.0 1.7 83 chr3L 10778821 intergenic not near genes chr3L 10778862 intergenic not near genes chr3L 10778904 intergenic not near genes chr3L_5_10775001 chr3L_10775001 RAL-820 852 chr3L 11105296 11105329 chr3L 11107007 11107040 X-element 10 1711 1.0 3.5 2.2 3.1 1744 chr3L 11105296 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107040 exon CG32073 - chr3L_10_11105001 chr3L_11105001 RAL-820 853 chr3L 11158165 11158407 chr3L 11158341 11158539 11 148 14.0 11.0 12.5 0.8 374 chr3L 11158165 exon CG32082 + chr3L 11158352 exon CG32082 + chr3L 11158539 exon CG32082 + chr3L_11_11155001 chr3L_11155001 RAL-820 854 chr3L 11158514 11158782 chr3L 11158629 11158928 13 120 27.0 20.5 23.8 0.5 414 chr3L 11158514 exon CG32082 + chr3L 11158721 exon CG32082 + chr3L 11158928 exon CG32082 + chr3L_13_11155001 chr3L_11155001 RAL-820 855 chr3L 11158791 11158805 chr3L 11158936 11158951 5 146 16.0 7.5 11.8 0.4 160 chr3L 11158791 exon CG32082 + chr3L 11158871 intron CG32082 + chr3L 11158951 exon CG32082 + chr3L_5_11155001 chr3L_11155001 RAL-820 856 chr3L 11158934 11158966 chr3L 11159297 11159330 8 364 9.5 13.5 11.5 0.6 396 chr3L 11158934 exon CG32082 + chr3L 11159132 intron CG32082 + chr3L 11159330 exon CG32082 + chr3L_8_11155001 chr3L_11155001 RAL-820 857 chr3L 11177149 11177179 chr3L 11177242 11177274 7 94 1.5 2.0 1.8 2.5 125 chr3L 11177149 3` UTR GlcAT-P - chr3L 11177212 3` UTR GlcAT-P - chr3L 11177274 3` UTR GlcAT-P - chr3L_7_11175001 chr3L_11175001 RAL-820 858 chr3L 11230120 11230124 chr3L 11230197 11230202 4 78 0.5 1.0 0.8 2.2 82 chr3L 11230120 intergenic CG42671 + chr3L 11230161 intergenic not near genes chr3L 11230202 intergenic not near genes chr3L_4_11230001 chr3L_11230001 RAL-820 859 chr3L 11448925 11448941 chr3L 11449019 11449035 5 94 4.5 4.5 4.5 0.9 110 chr3L 11448925 intergenic not near genes chr3L 11448980 intergenic not near genes chr3L 11449035 intergenic not near genes chr3L_5_11445001 chr3L_11445001 RAL-820 860 chr3L 11534828 11534859 chr3L 11534917 11534947 7 88 2.5 0.5 1.5 2.8 119 chr3L 11534828 intron Mob2 - chr3L 11534888 intron Mob2 - chr3L 11534947 intron Mob2 - chr3L_7_11530001 chr3L_11530001 RAL-820 861 chr3L 11541206 11541226 chr3L 11541292 11541312 6 83 1.5 1.0 1.2 2.7 106 chr3L 11541206 intron Mob2 - chr3L 11541259 intron Mob2 - chr3L 11541312 intron Mob2 - chr3L_6_11540001 chr3L_11540001 RAL-820 862 chr3L 11564789 11564812 chr3L 11572408 11572437 412 6 7618 2.0 2.5 2.2 1.9 7648 chr3L 11564789 exon CG33267 + chr3L 11568613 intron CG33267 + chr3L 11572437 exon CG33267 + chr3L_6_11565001 chr3L_11565001 RAL-820 863 chr3L 11664530 11664544 chr3L 11664647 11664659 4 116 2.0 0.5 1.2 1.8 129 chr3L 11664530 intron CG32085 - chr3L 11664594 intron CG32085 - chr3L 11664659 intron CG32085 - chr3L_4_11660001 chr3L_11660001 RAL-820 864 chr3L 11678096 11678125 chr3L 11678183 11678212 9 87 0.0 1.0 0.5 6.0 116 chr3L 11678096 intron CG32085 - chr3L 11678154 intron CG32085 - chr3L 11678212 intron CG32085 - chr3L_9_11675001 chr3L_11675001 RAL-820 865 chr3L 11723081 11723113 chr3L 11727876 11727908 Doc 8 4795 1.0 1.0 1.0 4.0 4827 chr3L 11723081 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727908 3` UTR Bmcp + chr3L_8_11725001 chr3L_11725001 RAL-820 866 chr3L 11744014 11744041 chr3L 11744121 11744149 8 108 1.5 0.0 0.8 4.4 135 chr3L 11744014 exon CG6024 - chr3L 11744082 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_8_11740001 chr3L_11740001 RAL-820 867 chr3L 11757917 11757936 chr3L 11758014 11758033 4 97 3.5 0.0 1.8 1.4 116 chr3L 11757917 intron CG6024 - chr3L 11757975 intron CG6024 - chr3L 11758033 intron CG6024 - chr3L_4_11755001 chr3L_11755001 RAL-820 868 chr3L 11816798 11816818 chr3L 11816899 11816919 5 101 3.0 3.5 3.2 1.2 121 chr3L 11816798 3` UTR CG5946 - chr3L 11816858 3` UTR CG5946 - chr3L 11816919 3` UTR CG5946 - chr3L_5_11815001 chr3L_11815001 RAL-820 869 chr3L 11849331 11849355 chr3L 11849431 11849455 8 100 2.0 1.0 1.5 3.2 124 chr3L 11849331 intergenic not near genes chr3L 11849393 intergenic not near genes chr3L 11849455 intergenic not near genes chr3L_8_11845001 chr3L_11845001 RAL-820 870 chr3L 11854865 11854886 chr3L 11854966 11854987 7 101 2.0 3.5 2.8 1.8 122 chr3L 11854865 exon CG44837 - chr3L 11854926 intron CG44837 - chr3L 11854987 intron CG44837 - chr3L_7_11850001 chr3L_11850001 RAL-820 871 chr3L 11943504 11943519 chr3L 11943603 11943620 4 100 1.5 3.0 2.2 1.2 116 chr3L 11943504 intergenic Rpt4R +,CG5883 - chr3L 11943562 intergenic Rpt4R +,CG5883 - chr3L 11943620 intergenic CG5883 -,Rpt4R + chr3L_4_11940001 chr3L_11940001 RAL-820 872 chr3L 11984567 11984591 chr3L 11984658 11984675 6 90 3.5 0.0 1.8 2.1 108 chr3L 11984567 intergenic CG6938 + chr3L 11984621 intergenic CG6938 + chr3L 11984675 intergenic CG6938 + chr3L_6_11980001 chr3L_11980001 RAL-820 873 chr3L 12013922 12013938 chr3L 12014013 12014029 7 88 1.0 3.5 2.2 2.2 107 chr3L 12013922 intron rols - chr3L 12013976 intron rols - chr3L 12014029 intron rols - chr3L_7_12010001 chr3L_12010001 RAL-820 874 chr3L 12052704 12052737 chr3L 12052793 12052826 10 89 2.5 2.0 2.2 3.1 122 chr3L 12052704 intron rols - chr3L 12052765 intron rols - chr3L 12052826 intron rols - chr3L_10_12050001 chr3L_12050001 RAL-820 875 chr3L 12066383 12066401 chr3L 12066608 12066638 9 235 1.5 4.0 2.8 2.4 255 chr3L 12066383 intergenic not near genes chr3L 12066510 intergenic not near genes chr3L 12066638 intergenic not near genes chr3L_9_12065001 chr3L_12065001 RAL-820 876 chr3L 12075429 12075448 chr3L 12075518 12075537 4 89 4.5 0.0 2.2 1.2 108 chr3L 12075429 intron Sema-5c - chr3L 12075483 intron Sema-5c - chr3L 12075537 intron Sema-5c - chr3L_4_12075001 chr3L_12075001 RAL-820 877 chr3L 12170792 12170818 chr3L 12170874 12170900 4 82 0.0 1.0 0.5 2.7 108 chr3L 12170792 intron Rh7 - chr3L 12170846 intron Rh7 - chr3L 12170900 intron Rh7 - chr3L_4_12170001 chr3L_12170001 RAL-820 878 chr3L 12310934 12310951 chr3L 12311030 12311030 6 94 1.5 5.0 3.2 1.4 96 chr3L 12310934 intron CG44355 + chr3L 12310982 intron CG44355 + chr3L 12311030 5` UTR CG44355 + chr3L_6_12310001 chr3L_12310001 RAL-820 879 chr3L 12312492 12312511 chr3L 12312570 12312588 10 78 1.0 5.5 3.2 2.4 96 chr3L 12312492 intergenic not near genes chr3L 12312540 intergenic not near genes chr3L 12312588 intergenic not near genes chr3L_10_12310001 chr3L_12310001 RAL-820 880 chr3L 12335390 12335410 chr3L 12335463 12335473 5 74 6.0 2.0 4.0 1.0 83 chr3L 12335390 exon CG32105 + chr3L 12335432 3` UTR CG32105 + chr3L 12335473 3` UTR CG32105 + chr3L_5_12335001 chr3L_12335001 RAL-820 881 chr3L 12353922 12353946 chr3L 12354010 12354035 8 89 3.0 3.5 3.2 1.9 113 chr3L 12353922 intergenic not near genes chr3L 12353978 intergenic not near genes chr3L 12354035 intergenic not near genes chr3L_8_12350001 chr3L_12350001 RAL-820 882 chr3L 12369536 12369569 chr3L 12369625 12369659 9 90 2.0 3.0 2.5 2.6 123 chr3L 12369536 intron Ncc69 - chr3L 12369598 intron Ncc69 - chr3L 12369659 intron Ncc69 - chr3L_9_12365001 chr3L_12365001 RAL-820 883 chr3L 12446273 12446289 chr3L 12446351 12446365 5 77 3.0 2.5 2.8 1.3 92 chr3L 12446273 intergenic not near genes chr3L 12446319 intergenic not near genes chr3L 12446365 intergenic not near genes chr3L_5_12445001 chr3L_12445001 RAL-820 884 chr3L 12705440 12705452 chr3L 12705521 12705534 4 82 1.0 3.0 2.0 1.3 94 chr3L 12705440 intron mirr + chr3L 12705487 intron mirr + chr3L 12705534 intron mirr + chr3L_4_12705001 chr3L_12705001 RAL-820 885 chr3L 12743276 12743279 chr3L 12743353 12743356 4 77 1.0 0.0 0.5 2.7 80 chr3L 12743276 intron CG32112 + chr3L 12743316 intron CG32112 + chr3L 12743356 intron CG32112 + chr3L_4_12740001 chr3L_12740001 RAL-820 886 chr3L 12801989 12802012 chr3L 12802060 12802088 6 75 0.5 0.0 0.2 5.0 99 chr3L 12801989 intron Atg1 - chr3L 12802038 intron Atg1 - chr3L 12802088 intron Atg1 - chr3L_6_12800001 chr3L_12800001 RAL-820 887 chr3L 12868030 12868050 chr3L 12868116 12868136 7 85 5.0 1.5 3.2 1.7 106 chr3L 12868030 intergenic not near genes chr3L 12868083 intergenic not near genes chr3L 12868136 intergenic not near genes chr3L_7_12865001 chr3L_12865001 RAL-820 888 chr3L 12894803 12894818 chr3L 12894881 12894896 8 78 5.0 5.0 5.0 1.3 93 chr3L 12894803 intergenic CG14118 + chr3L 12894850 intergenic CG14118 + chr3L 12894896 intergenic CG14118 + chr3L_8_12890001 chr3L_12890001 RAL-820 889 chr3L 12919292 12919311 chr3L 12924749 12924759 Rt1c 7 5467 1.0 2.5 1.8 2.5 5467 chr3L 12919292 intergenic not near genes chr3L 12922026 intergenic not near genes chr3L 12924759 intergenic not near genes chr3L_7_12920001 chr3L_12920001 RAL-820 890 chr3L 12957789 12957819 chr3L 12962271 12962301 copia 8 4481 2.0 2.5 2.2 2.5 4512 chr3L 12957789 intergenic not near genes chr3L 12960045 intergenic not near genes chr3L 12962301 intergenic not near genes chr3L_8_12960001 chr3L_12960001 RAL-820 891 chr3L 12967135 12967169 chr3L 12967216 12967253 13 82 1.5 3.5 2.5 3.7 118 chr3L 12967135 exon Or69a - chr3L 12967194 exon Or69a - chr3L 12967253 exon Or69a - chr3L_13_12965001 chr3L_12965001 RAL-820 892 chr3L 13007697 13007722 chr3L 13007776 13007801 6 79 1.5 3.5 2.5 1.7 104 chr3L 13007697 exon CG11263 + chr3L 13007749 3` UTR CG11263 + chr3L 13007801 3` UTR CG11263 + chr3L_6_13005001 chr3L_13005001 RAL-820 893 chr3L 13045987 13046018 chr3L 13046154 13046185 6 167 2.5 2.5 2.5 1.7 198 chr3L 13045987 intron Syx13 + chr3L 13046086 intron Syx13 + chr3L 13046185 intron Syx13 + chr3L_6_13045001 chr3L_13045001 RAL-820 894 chr3L 13076570 13076599 chr3L 13076664 13076693 9 94 2.0 1.5 1.8 3.2 123 chr3L 13076570 intergenic not near genes chr3L 13076632 intergenic not near genes chr3L 13076693 intergenic not near genes chr3L_9_13075001 chr3L_13075001 RAL-820 895 chr3L 13087467 13087495 chr3L 13087548 13087573 8 80 2.5 0.5 1.5 3.2 106 chr3L 13087467 intergenic CR45749 +,CG17300 - chr3L 13087520 5` UTR CR45749 + chr3L 13087573 5` UTR CR45749 + chr3L_8_13085001 chr3L_13085001 RAL-820 896 chr3L 13134516 13134532 chr3L 13134602 13134618 7 85 1.0 1.0 1.0 3.5 102 chr3L 13134516 intergenic not near genes chr3L 13134567 intergenic not near genes chr3L 13134618 intergenic not near genes chr3L_7_13130001 chr3L_13130001 RAL-820 897 chr3L 13160538 13160569 chr3L 13160641 13160674 8 104 1.5 1.0 1.2 3.6 136 chr3L 13160538 intergenic not near genes chr3L 13160606 intergenic not near genes chr3L 13160674 intergenic not near genes chr3L_8_13160001 chr3L_13160001 RAL-820 898 chr3L 13206235 13206263 chr3L 13206317 13206345 8 82 3.0 2.5 2.8 2.1 110 chr3L 13206235 intergenic not near genes chr3L 13206290 intergenic not near genes chr3L 13206345 intergenic not near genes chr3L_8_13205001 chr3L_13205001 RAL-820 899 chr3L 13223218 13223241 chr3L 13223295 13223318 7 77 0.0 1.5 0.8 3.9 100 chr3L 13223218 intergenic not near genes chr3L 13223268 intergenic not near genes chr3L 13223318 intergenic not near genes chr3L_7_13220001 chr3L_13220001 RAL-820 900 chr3L 13355148 13355169 chr3L 13355727 13355748 4 579 14.0 8.5 11.2 0.3 600 chr3L 13355148 intergenic CG17687 + chr3L 13355448 intergenic not near genes chr3L 13355748 intergenic not near genes chr3L_4_13355001 chr3L_13355001 RAL-820 901 chr3L 13374245 13374276 chr3L 13374334 13374365 7 89 1.5 2.0 1.8 2.5 120 chr3L 13374245 intergenic not near genes chr3L 13374305 intergenic not near genes chr3L 13374365 intergenic not near genes chr3L_7_13370001 chr3L_13370001 RAL-820 902 chr3L 13458113 13458127 chr3L 13458199 13458213 5 86 6.0 4.5 5.2 0.8 100 chr3L 13458113 intron CG10738 + chr3L 13458163 intron CG10738 + chr3L 13458213 intron CG10738 + chr3L_5_13455001 chr3L_13455001 RAL-820 903 chr3L 13525159 13525186 chr3L 13532955 13532982 roo 6 7796 3.5 1.5 2.5 1.7 7823 chr3L 13525159 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532982 intergenic not near genes chr3L_6_13525001 chr3L_13525001 RAL-820 904 chr3L 13596043 13596058 chr3L 13596158 13596172 4 115 1.0 0.0 0.5 2.7 129 chr3L 13596043 intron bru-3 - chr3L 13596108 intron bru-3 - chr3L 13596172 intron bru-3 - chr3L_4_13595001 chr3L_13595001 RAL-820 905 chr3L 13629528 13629545 chr3L 13629639 13629656 4 111 0.5 4.5 2.5 1.1 128 chr3L 13629528 intron bru-3 - chr3L 13629592 intron bru-3 - chr3L 13629656 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-820 906 chr3L 13633414 13633441 chr3L 13633768 13633776 7 351 1.0 2.0 1.5 2.8 362 chr3L 13633414 intron bru-3 - chr3L 13633595 intron bru-3 - chr3L 13633776 intron bru-3 - chr3L_7_13630001 chr3L_13630001 RAL-820 907 chr3L 13677533 13677548 chr3L 13677610 13677625 5 76 2.0 1.0 1.5 2.0 92 chr3L 13677533 intron bru-3 - chr3L 13677579 intron bru-3 - chr3L 13677625 intron bru-3 - chr3L_5_13675001 chr3L_13675001 RAL-820 908 chr3L 13740039 13740052 chr3L 13740132 13740145 4 93 1.0 2.5 1.8 1.4 106 chr3L 13740039 intron bru-3 - chr3L 13740092 intron bru-3 - chr3L 13740145 intron bru-3 - chr3L_4_13740001 chr3L_13740001 RAL-820 909 chr3L 13868097 13868126 chr3L 13868232 13868262 5 134 4.0 1.5 2.8 1.3 165 chr3L 13868097 3` UTR dysc - chr3L 13868180 3` UTR dysc - chr3L 13868262 3` UTR dysc - chr3L_5_13865001 chr3L_13865001 RAL-820 910 chr3L 14006563 14006595 chr3L 14006646 14006677 14 83 3.0 3.0 3.0 3.5 114 chr3L 14006563 intron upSET + chr3L 14006620 intron upSET + chr3L 14006677 intron upSET + chr3L_14_14005001 chr3L_14005001 RAL-820 911 chr3L 14076290 14076318 chr3L 14076368 14076396 8 78 0.0 4.5 2.2 2.5 106 chr3L 14076290 intron btl + chr3L 14076343 intron btl + chr3L 14076396 intron btl + chr3L_8_14075001 chr3L_14075001 RAL-820 912 chr3L 14169006 14169039 chr3L 14169165 14169198 12 158 2.5 5.0 3.8 2.5 192 chr3L 14169006 intergenic not near genes chr3L 14169102 intergenic not near genes chr3L 14169198 intergenic not near genes chr3L_12_14165001 chr3L_14165001 RAL-820 913 chr3L 14245573 14245590 chr3L 14245663 14245684 1360 6 93 3.0 1.5 2.2 1.9 111 chr3L 14245573 3` UTR CR44561 - chr3L 14245628 3` UTR CR44561 - chr3L 14245684 3` UTR CR44561 - chr3L_6_14245001 chr3L_14245001 RAL-820 914 chr3L 14267371 14267394 chr3L 14271806 14271831 F-element 6 4438 2.5 2.5 2.5 1.7 4460 chr3L 14267371 intergenic not near genes chr3L 14269601 intergenic not near genes chr3L 14271831 intergenic not near genes chr3L_6_14265001 chr3L_14265001 RAL-820 915 chr3L 14282599 14282606 chr3L 14282677 14282686 4 80 0.0 2.5 1.2 1.8 87 chr3L 14282599 intron fz + chr3L 14282642 intron fz + chr3L 14282686 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-820 916 chr3L 14287312 14287334 chr3L 14287403 14287425 5 91 2.0 2.0 2.0 1.7 113 chr3L 14287312 intron fz + chr3L 14287368 intron fz + chr3L 14287425 intron fz + chr3L_5_14285001 chr3L_14285001 RAL-820 917 chr3L 14295986 14295997 chr3L 14296467 14296481 roo 5 484 8.0 4.0 6.0 0.7 495 chr3L 14295986 intron fz + chr3L 14296234 intron fz + chr3L 14296481 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-820 918 chr3L 14296000 14296013 chr3L 14296466 14296483 roo 7 480 6.0 4.0 5.0 1.2 483 chr3L 14296000 intron fz + chr3L 14296242 intron fz + chr3L 14296483 intron fz + chr3L_7_14295001 chr3L_14295001 RAL-820 919 chr3L 14356520 14356553 chr3L 14356598 14356633 10 80 2.0 1.0 1.5 4.0 113 chr3L 14356520 intron fz + chr3L 14356576 intron fz + chr3L 14356633 intron fz + chr3L_10_14355001 chr3L_14355001 RAL-820 920 chr3L 14420811 14420834 chr3L 14421078 14421104 6 267 1.5 2.5 2.0 2.0 293 chr3L 14420811 intron bbg - chr3L 14420958 intron bbg - chr3L 14421104 intron bbg - chr3L_6_14420001 chr3L_14420001 RAL-820 921 chr3L 14514693 14514694 chr3L 22908066 22908067 Stalker2 4 8393373 11.5 8.0 9.8 0.4 8393374 chr3L 14514693 intron bbg - chr3L 18711380 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-820 922 chr3L 14665022 14665059 chr3L 14665147 14665182 9 122 2.5 3.0 2.8 2.4 160 chr3L 14665022 exon dlp + chr3L 14665102 intron dlp + chr3L 14665182 intron dlp + chr3L_9_14665001 chr3L_14665001 RAL-820 923 chr3L 14706291 14706324 chr3L 14706367 14706393 8 75 2.0 3.0 2.5 2.3 102 chr3L 14706291 intron ome + chr3L 14706342 intron ome + chr3L 14706393 intron ome + chr3L_8_14705001 chr3L_14705001 RAL-820 924 chr3L 14721181 14721206 chr3L 14723024 14723049 Rt1c 6 1840 2.5 3.0 2.8 1.6 1868 chr3L 14721181 intron ome + chr3L 14722115 intron ome + chr3L 14723049 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-820 925 chr3L 14809186 14809221 chr3L 14809267 14809302 6 81 1.5 1.0 1.2 2.7 116 chr3L 14809186 intron CG17839 + chr3L 14809244 intron CG17839 + chr3L 14809302 intron CG17839 + chr3L_6_14805001 chr3L_14805001 RAL-820 926 chr3L 14913904 14914151 chr3L 14913981 14914244 7 79 1.5 0.5 1.0 3.5 340 chr3L 14913904 intron DCX-EMAP + chr3L 14914074 intron DCX-EMAP + chr3L 14914244 intron DCX-EMAP + chr3L_7_14910001 chr3L_14910001 RAL-820 927 chr3L 14917664 14917691 chr3L 14917747 14917774 8 83 6.5 3.5 5.0 1.3 110 chr3L 14917664 intron DCX-EMAP + chr3L 14917719 intron DCX-EMAP + chr3L 14917774 intron DCX-EMAP + chr3L_8_14915001 chr3L_14915001 RAL-820 928 chr3L 15048117 15048131 chr3L 15048481 15048495 4 364 10.5 13.0 11.8 0.3 378 chr3L 15048117 intron Sytbeta - chr3L 15048306 intron Sytbeta - chr3L 15048495 intron Sytbeta - chr3L_4_15045001 chr3L_15045001 RAL-820 929 chr3L 15163624 15163634 chr3L 15163715 15163723 4 90 2.0 3.0 2.5 1.1 99 chr3L 15163624 5` UTR CG7011 - chr3L 15163674 intergenic CG7011 - chr3L 15163723 intergenic CG7011 - chr3L_4_15160001 chr3L_15160001 RAL-820 930 chr3L 15273345 15273357 chr3L 15273491 15273503 9 146 0.0 2.0 1.0 4.5 158 chr3L 15273345 intergenic not near genes chr3L 15273424 intergenic not near genes chr3L 15273503 intergenic not near genes chr3L_9_15270001 chr3L_15270001 RAL-820 931 chr3L 15325557 15325565 chr3L 15325650 15325658 5 92 1.5 2.0 1.8 1.8 101 chr3L 15325557 intergenic not near genes chr3L 15325608 intergenic not near genes chr3L 15325658 intergenic not near genes chr3L_5_15325001 chr3L_15325001 RAL-820 932 chr3L 15444652 15444677 chr3L 15444746 15444770 11 92 4.0 6.0 5.0 1.8 118 chr3L 15444652 intergenic not near genes chr3L 15444711 intergenic not near genes chr3L 15444770 intergenic not near genes chr3L_11_15440001 chr3L_15440001 RAL-820 933 chr3L 15463460 15463494 chr3L 15463550 15463584 5 90 1.0 2.5 1.8 1.8 124 chr3L 15463460 intergenic not near genes chr3L 15463522 intergenic not near genes chr3L 15463584 intergenic not near genes chr3L_5_15460001 chr3L_15460001 RAL-820 934 chr3L 15691414 15691437 chr3L 15691496 15691497 4 76 1.0 0.0 0.5 2.7 83 chr3L 15691414 intron CG34451 - chr3L 15691456 intron CG34451 - chr3L 15691497 intron CG34451 - chr3L_4_15690001 chr3L_15690001 RAL-820 935 chr3L 15726514 15726548 chr3L 15726601 15726634 10 87 4.0 1.5 2.8 2.6 120 chr3L 15726514 intron comm - chr3L 15726574 intron comm - chr3L 15726634 intron comm - chr3L_10_15725001 chr3L_15725001 RAL-820 936 chr3L 15742960 15742989 chr3L 15743121 15743149 5 160 3.0 0.0 1.5 2.0 189 chr3L 15742960 intergenic not near genes chr3L 15743054 intergenic not near genes chr3L 15743149 intergenic not near genes chr3L_5_15740001 chr3L_15740001 RAL-820 937 chr3L 15769415 15769444 chr3L 15769496 15769523 8 80 1.0 2.5 1.8 2.9 108 chr3L 15769415 intergenic not near genes chr3L 15769469 intergenic not near genes chr3L 15769523 intergenic not near genes chr3L_8_15765001 chr3L_15765001 RAL-820 938 chr3L 15832252 15832265 chr3L 15832333 15832346 5 81 4.5 1.5 3.0 1.2 94 chr3L 15832252 intergenic CG12713 +,dbo + chr3L 15832299 intergenic CG12713 +,dbo + chr3L 15832346 intergenic CG12713 +,dbo + chr3L_5_15830001 chr3L_15830001 RAL-820 939 chr3L 15883191 15883223 chr3L 15883483 15883516 11 292 2.0 2.0 2.0 3.7 325 chr3L 15883191 intron pHCl - chr3L 15883354 intron pHCl - chr3L 15883516 intron pHCl - chr3L_11_15880001 chr3L_15880001 RAL-820 940 chr3L 15899223 15899258 chr3L 15899790 15899825 jockey 7 565 1.5 4.0 2.8 1.8 602 chr3L 15899223 intergenic pHCl - chr3L 15899524 intergenic pHCl - chr3L 15899825 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-820 941 chr3L 16070747 16070759 chr3L 16070824 16070836 4 77 3.0 0.5 1.8 1.4 89 chr3L 16070747 intron Mbs + chr3L 16070792 intron Mbs + chr3L 16070836 exon Mbs + chr3L_4_16070001 chr3L_16070001 RAL-820 942 chr3L 16149205 16149227 chr3L 16149294 16149315 4 89 0.0 1.5 0.8 2.2 110 chr3L 16149205 intron CG5151 - chr3L 16149260 intron CG5151 - chr3L 16149315 intron CG5151 - chr3L_4_16145001 chr3L_16145001 RAL-820 943 chr3L 16158814 16158836 chr3L 16158899 16158921 6 85 1.5 1.5 1.5 2.4 107 chr3L 16158814 intron CG5151 - chr3L 16158868 intron CG5151 - chr3L 16158921 intron CG5151 - chr3L_6_16155001 chr3L_16155001 RAL-820 944 chr3L 16184111 16184132 chr3L 16188930 16188951 X-element 5 4819 1.5 1.0 1.2 2.3 4840 chr3L 16184111 intergenic not near genes chr3L 16186531 intergenic not near genes chr3L 16188951 intergenic not near genes chr3L_5_16185001 chr3L_16185001 RAL-820 945 chr3L 16198384 16198414 chr3L 16198469 16198499 5 85 2.5 1.0 1.8 1.8 115 chr3L 16198384 intron CG33687 + chr3L 16198442 exon CG33687 + chr3L 16198499 exon CG33687 + chr3L_5_16195001 chr3L_16195001 RAL-820 946 chr3L 16443847 16443875 chr3L 16446187 16446215 Doc 8 2340 1.0 2.0 1.5 3.2 2368 chr3L 16443847 intron,intron CG33158 +,dsx-c73A - chr3L 16445031 intron,intron CG33158 +,dsx-c73A - chr3L 16446215 intron,intron CG33158 +,dsx-c73A - chr3L_8_16445001 chr3L_16445001 RAL-820 947 chr3L 16493979 16494012 chr3L 16494496 16494529 jockey 9 517 2.0 4.0 3.0 2.2 550 chr3L 16493979 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494254 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494529 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_9_16490001 chr3L_16490001 RAL-820 948 chr3L 16540053 16540078 chr3L 16540141 16540166 10 88 1.5 2.0 1.8 3.6 113 chr3L 16540053 intron CG43373 - chr3L 16540110 intron CG43373 - chr3L 16540166 intron CG43373 - chr3L_10_16540001 chr3L_16540001 RAL-820 949 chr3L 16616513 16616540 chr3L 16621841 16621867 297 8 5328 1.5 2.5 2.0 2.7 5354 chr3L 16616513 3` UTR Abl - chr3L 16619190 3` UTR Abl - chr3L 16621867 3` UTR Abl - chr3L_8_16615001 chr3L_16615001 RAL-820 950 chr3L 16749208 16749230 chr3L 16749284 16749306 6 76 1.5 2.5 2.0 2.0 98 chr3L 16749208 intergenic not near genes chr3L 16749257 intergenic not near genes chr3L 16749306 intergenic not near genes chr3L_6_16745001 chr3L_16745001 RAL-820 951 chr3L 16764577 16764611 chr3L 16764669 16764718 7 103 0.5 0.0 0.2 5.8 141 chr3L 16764577 intergenic not near genes chr3L 16764648 intergenic not near genes chr3L 16764718 intergenic not near genes chr3L_7_16760001 chr3L_16760001 RAL-820 952 chr3L 16800587 16800602 chr3L 16800725 16800740 6 138 2.0 2.0 2.0 2.0 153 chr3L 16800587 intron CG9674 - chr3L 16800664 intron CG9674 - chr3L 16800740 intron CG9674 - chr3L_6_16800001 chr3L_16800001 RAL-820 953 chr3L 16818751 16818771 chr3L 16818827 16818847 7 76 2.5 3.0 2.8 1.8 96 chr3L 16818751 intron,intron nudC +,CG13024 - chr3L 16818799 intron,intron nudC +,CG13024 - chr3L 16818847 intron,intron nudC +,CG13024 - chr3L_7_16815001 chr3L_16815001 RAL-820 954 chr3L 16941401 16941425 chr3L 16941501 16941526 6 101 3.0 0.0 1.5 2.4 125 chr3L 16941401 intron Cpr73D - chr3L 16941464 intron Cpr73D - chr3L 16941526 intron Cpr73D - chr3L_6_16940001 chr3L_16940001 RAL-820 955 chr3L 16945728 16945748 chr3L 16954881 16954901 roo 9 9152 5.0 0.0 2.5 2.6 9173 chr3L 16945728 exon Obp73a + chr3L 16950314 intergenic not near genes chr3L 16954901 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-820 956 chr3L 16986619 16986651 chr3L 16986700 16986733 16 79 2.0 1.5 1.8 5.7 114 chr3L 16986619 intron Exn + chr3L 16986676 intron Exn + chr3L 16986733 intron Exn + chr3L_16_16985001 chr3L_16985001 RAL-820 957 chr3L 17034954 17034967 chr3L 17035142 17035155 G2 4 188 1.5 4.0 2.8 1.1 201 chr3L 17034954 intergenic not near genes chr3L 17035054 intergenic not near genes chr3L 17035155 intergenic not near genes chr3L_4_17035001 chr3L_17035001 RAL-820 958 chr3L 17149168 17149182 chr3L 17149247 17149263 7 80 3.0 0.0 1.5 2.8 95 chr3L 17149168 intron Rbp6 - chr3L 17149216 intron Rbp6 - chr3L 17149263 intron Rbp6 - chr3L_7_17145001 chr3L_17145001 RAL-820 959 chr3L 17310073 17310101 chr3L 17310277 17310305 4 204 1.0 2.0 1.5 1.6 232 chr3L 17310073 intergenic not near genes chr3L 17310189 intergenic not near genes chr3L 17310305 intergenic not near genes chr3L_4_17310001 chr3L_17310001 RAL-820 960 chr3L 17367435 17367452 chr3L 17367529 17367546 5 94 2.5 1.0 1.8 1.8 111 chr3L 17367435 intergenic CR45688 +,Cad74A - chr3L 17367490 intergenic CR45688 +,Cad74A - chr3L 17367546 intergenic CR45688 +,Cad74A - chr3L_5_17365001 chr3L_17365001 RAL-820 961 chr3L 17461213 17461223 chr3L 17461341 17461351 4 128 1.0 2.5 1.8 1.4 138 chr3L 17461213 intergenic not near genes chr3L 17461282 intergenic not near genes chr3L 17461351 intergenic not near genes chr3L_4_17460001 chr3L_17460001 RAL-820 962 chr3L 17510733 17510764 chr3L 17510817 17510848 9 83 5.0 2.5 3.8 1.9 115 chr3L 17510733 exon Oatp74D + chr3L 17510790 intron Oatp74D + chr3L 17510848 intron Oatp74D + chr3L_9_17510001 chr3L_17510001 RAL-820 963 chr3L 17516990 17517013 chr3L 17524548 17524570 412 5 7558 2.0 2.0 2.0 1.7 7580 chr3L 17516990 intron CG7564 + chr3L 17520780 intron CG7564 + chr3L 17524570 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-820 964 chr3L 17790457 17790486 chr3L 17790598 17790627 12 139 2.5 1.0 1.8 4.3 170 chr3L 17790457 intergenic not near genes chr3L 17790542 intergenic not near genes chr3L 17790627 intergenic CG42815 - chr3L_12_17790001 chr3L_17790001 RAL-820 965 chr3L 17914848 17914862 chr3L 17914939 17914953 4 91 1.0 2.5 1.8 1.4 105 chr3L 17914848 intergenic not near genes chr3L 17914900 intergenic not near genes chr3L 17914953 intergenic not near genes chr3L_4_17910001 chr3L_17910001 RAL-820 966 chr3L 17936985 17937019 chr3L 17937134 17937168 7 149 1.5 1.0 1.2 3.2 183 chr3L 17936985 intron CG43174 + chr3L 17937076 intron CG43174 + chr3L 17937168 intron CG43174 + chr3L_7_17935001 chr3L_17935001 RAL-820 967 chr3L 17948164 17948200 chr3L 17948241 17948275 4 76 1.0 1.5 1.2 1.8 111 chr3L 17948164 intergenic CR45393 - chr3L 17948220 intergenic not near genes chr3L 17948275 intergenic not near genes chr3L_4_17945001 chr3L_17945001 RAL-820 968 chr3L 17991579 17991586 chr3L 17991657 17991664 4 78 2.5 2.0 2.2 1.2 85 chr3L 17991579 intron Eip75B - chr3L 17991622 intron Eip75B - chr3L 17991664 intron Eip75B - chr3L_4_17990001 chr3L_17990001 RAL-820 969 chr3L 18042248 18042276 chr3L 18042326 18042354 7 78 1.0 1.0 1.0 3.5 106 chr3L 18042248 intron Eip75B - chr3L 18042301 intron Eip75B - chr3L 18042354 intron Eip75B - chr3L_7_18040001 chr3L_18040001 RAL-820 970 chr3L 18092781 18092800 chr3L 18092896 18092915 4 115 2.0 0.0 1.0 2.0 134 chr3L 18092781 intron CG13698 - chr3L 18092848 intron CG13698 - chr3L 18092915 intron CG13698 - chr3L_4_18090001 chr3L_18090001 RAL-820 971 chr3L 18106269 18106280 chr3L 18106387 18106399 4 117 1.5 0.0 0.8 2.2 130 chr3L 18106269 intergenic CG13698 -,mRpS26 + chr3L 18106334 intergenic CG13698 -,mRpS26 + chr3L 18106399 intergenic mRpS26 +,CG13698 - chr3L_4_18105001 chr3L_18105001 RAL-820 972 chr3L 18258857 18258886 chr3L 18258983 18259011 5 124 0.5 0.0 0.2 4.2 154 chr3L 18258857 intergenic not near genes chr3L 18258934 intergenic not near genes chr3L 18259011 intergenic not near genes chr3L_5_18255001 chr3L_18255001 RAL-820 973 chr3L 18262474 18262482 chr3L 18262557 18262565 4 83 1.0 1.0 1.0 2.0 91 chr3L 18262474 intergenic not near genes chr3L 18262520 intergenic not near genes chr3L 18262565 intergenic not near genes chr3L_4_18260001 chr3L_18260001 RAL-820 974 chr3L 18307316 18307321 chr3L 18307403 18307408 4 87 3.5 0.0 1.8 1.4 92 chr3L 18307316 intergenic not near genes chr3L 18307362 intergenic not near genes chr3L 18307408 intergenic not near genes chr3L_4_18305001 chr3L_18305001 RAL-820 975 chr3L 18337691 18337721 chr3L 18337768 18337798 7 77 0.5 0.0 0.2 5.8 107 chr3L 18337691 intergenic not near genes chr3L 18337744 intergenic not near genes chr3L 18337798 intergenic not near genes chr3L_7_18335001 chr3L_18335001 RAL-820 976 chr3L 18359593 18359627 chr3L 18359685 18359719 5 92 2.0 0.5 1.2 2.3 126 chr3L 18359593 intergenic not near genes chr3L 18359656 intergenic not near genes chr3L 18359719 intergenic not near genes chr3L_5_18355001 chr3L_18355001 RAL-820 977 chr3L 18436066 18436091 chr3L 18436164 18436189 6 98 0.5 1.0 0.8 3.3 123 chr3L 18436066 intergenic not near genes chr3L 18436128 intergenic not near genes chr3L 18436189 intergenic not near genes chr3L_6_18435001 chr3L_18435001 RAL-820 978 chr3L 18456276 18456299 chr3L 18456364 18456387 4 88 2.0 0.0 1.0 2.0 111 chr3L 18456276 intergenic CR44670 - chr3L 18456332 intergenic CR44670 - chr3L 18456387 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-820 979 chr3L 18514906 18514929 chr3L 18520097 18520120 BS 7 5191 3.0 3.0 3.0 1.8 5214 chr3L 18514906 intergenic not near genes chr3L 18517513 intergenic not near genes chr3L 18520120 intergenic not near genes chr3L_7_18515001 chr3L_18515001 RAL-820 980 chr3L 18528633 18528658 chr3L 18537794 18537819 roo 6 9161 1.0 3.5 2.2 1.9 9186 chr3L 18528633 intergenic not near genes chr3L 18533226 intergenic not near genes chr3L 18537819 intergenic not near genes chr3L_6_18530001 chr3L_18530001 RAL-820 981 chr3L 18582216 18582229 chr3L 18582301 18582314 4 85 5.5 2.0 3.8 0.8 98 chr3L 18582216 intergenic not near genes chr3L 18582265 intergenic not near genes chr3L 18582314 intergenic not near genes chr3L_4_18580001 chr3L_18580001 RAL-820 982 chr3L 18582827 18582848 chr3L 18582976 18582997 5 149 0.0 2.5 1.2 2.3 170 chr3L 18582827 intergenic not near genes chr3L 18582912 intergenic not near genes chr3L 18582997 intergenic CR45435 + chr3L_5_18580001 chr3L_18580001 RAL-820 983 chr3L 18593955 18593981 chr3L 18595935 18595961 Doc 4 1980 2.5 0.5 1.5 1.6 2006 chr3L 18593955 intergenic term - chr3L 18594958 intergenic not near genes chr3L 18595961 intergenic CR45389 + chr3L_4_18590001 chr3L_18590001 RAL-820 984 chr3L 18626118 18626139 chr3L 18626198 18626219 5 80 1.5 1.5 1.5 2.0 101 chr3L 18626118 5` UTR MYPT-75D + chr3L 18626168 5` UTR MYPT-75D + chr3L 18626219 5` UTR MYPT-75D + chr3L_5_18625001 chr3L_18625001 RAL-820 985 chr3L 18653949 18653979 chr3L 18654038 18654067 4 88 1.5 3.0 2.2 1.2 118 chr3L 18653949 intron MYPT-75D + chr3L 18654008 intron MYPT-75D + chr3L 18654067 intron MYPT-75D + chr3L_4_18650001 chr3L_18650001 RAL-820 986 chr3L 18730374 18730385 chr3L 18730554 18730565 5 180 8.5 1.0 4.8 0.9 191 chr3L 18730374 intergenic not near genes chr3L 18730470 intergenic not near genes chr3L 18730565 intergenic not near genes chr3L_5_18730001 chr3L_18730001 RAL-820 987 chr3L 18738671 18738692 chr3L 18738759 18738779 7 87 0.5 1.0 0.8 3.9 108 chr3L 18738671 intergenic not near genes chr3L 18738725 intergenic not near genes chr3L 18738779 intergenic not near genes chr3L_7_18735001 chr3L_18735001 RAL-820 988 chr3L 18772408 18772440 chr3L 18781089 18781121 roo 10 8681 4.0 2.0 3.0 2.5 8713 chr3L 18772408 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781121 intron ftz-f1 - chr3L_10_18775001 chr3L_18775001 RAL-820 989 chr3L 18784393 18784406 chr3L 18784482 18784495 6 89 2.0 1.0 1.5 2.4 102 chr3L 18784393 intron ftz-f1 - chr3L 18784444 intron ftz-f1 - chr3L 18784495 intron ftz-f1 - chr3L_6_18780001 chr3L_18780001 RAL-820 990 chr3L 18792570 18792590 chr3L 18792652 18792672 7 79 1.0 0.0 0.5 4.7 102 chr3L 18792570 intron ftz-f1 - chr3L 18792621 intron ftz-f1 - chr3L 18792672 intron ftz-f1 - chr3L_7_18790001 chr3L_18790001 RAL-820 991 chr3L 18833779 18833808 chr3L 18834943 18834971 1360 5 1163 1.0 1.0 1.0 2.5 1192 chr3L 18833779 intron Indy - chr3L 18834375 intron Indy - chr3L 18834971 intron Indy - chr3L_5_18830001 chr3L_18830001 RAL-820 992 chr3L 18843868 18843875 chr3L 18843966 18843973 4 98 2.5 0.5 1.5 1.6 105 chr3L 18843868 intron Indy - chr3L 18843920 intron Indy - chr3L 18843973 intron Indy - chr3L_4_18840001 chr3L_18840001 RAL-820 993 chr3L 19008837 19008872 chr3L 19009178 19009209 jockey 8 338 3.0 1.5 2.2 2.5 372 chr3L 19008837 intron nkd - chr3L 19009023 intron nkd - chr3L 19009209 intron nkd - chr3L_8_19005001 chr3L_19005001 RAL-820 994 chr3L 19115642 19115667 chr3L 19115815 19115845 BS 6 176 2.5 1.5 2.0 2.0 203 chr3L 19115642 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115845 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-820 995 chr3L 19117041 19117075 chr3L 19124488 19124522 mdg1 10 7446 1.5 2.5 2.0 3.3 7481 chr3L 19117041 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_10_19120001 chr3L_19120001 RAL-820 996 chr3L 19182392 19182416 chr3L 19182473 19182494 7 80 2.5 3.0 2.8 1.8 102 chr3L 19182392 intron fz2 - chr3L 19182443 intron fz2 - chr3L 19182494 intron fz2 - chr3L_7_19180001 chr3L_19180001 RAL-820 997 chr3L 19216516 19216530 chr3L 19216593 19216607 4 77 1.5 0.0 0.8 2.2 91 chr3L 19216516 intron fz2 - chr3L 19216562 intron fz2 - chr3L 19216607 intron fz2 - chr3L_4_19215001 chr3L_19215001 RAL-820 998 chr3L 9307795 9307796 chr3L 19220637 19220637 6 9912841 11.5 19.0 15.2 0.4 9912842 chr3L 9307795 intergenic not near genes chr3L 14264216 intergenic not near genes chr3L 19220637 intron fz2 - chr3L_6_14260001 chr3L_14260001 RAL-820 999 chr3L 19403799 19403817 chr3L 19403890 19403908 7 88 3.0 3.5 3.2 1.7 109 chr3L 19403799 intron CG32206 - chr3L 19403854 intron CG32206 - chr3L 19403908 intron CG32206 - chr3L_7_19400001 chr3L_19400001 RAL-820 1000 chr3L 19426750 19426776 chr3L 19426826 19426852 7 77 2.0 4.5 3.2 1.7 102 chr3L 19426750 intergenic not near genes chr3L 19426801 intergenic not near genes chr3L 19426852 intergenic not near genes chr3L_7_19425001 chr3L_19425001 RAL-820 1001 chr3L 19430417 19430432 chr3L 19430495 19430509 5 78 0.0 7.5 3.8 1.0 92 chr3L 19430417 intergenic not near genes chr3L 19430463 intergenic not near genes chr3L 19430509 intergenic not near genes chr3L_5_19430001 chr3L_19430001 RAL-820 1002 chr3L 19845735 19845766 chr3L 19845822 19845853 7 87 0.5 0.5 0.5 4.7 118 chr3L 19845735 intron Papss + chr3L 19845794 intron Papss + chr3L 19845853 intron Papss + chr3L_7_19845001 chr3L_19845001 RAL-820 1003 chr3L 19848504 19848535 chr3L 19857694 19857725 roo 8 9190 1.0 3.5 2.2 2.5 9221 chr3L 19848504 intron Papss + chr3L 19853114 intron Papss + chr3L 19857725 intron Papss + chr3L_8_19850001 chr3L_19850001 RAL-820 1004 chr3L 19981206 19981234 chr3L 19981286 19981314 6 80 1.5 1.5 1.5 2.4 108 chr3L 19981206 intergenic CG17732 + chr3L 19981260 intergenic CG17732 + chr3L 19981314 intergenic CG17732 + chr3L_6_19980001 chr3L_19980001 RAL-820 1005 chr3L 20056274 20056290 chr3L 20056364 20056378 4 89 1.0 4.5 2.8 1.1 104 chr3L 20056274 intergenic not near genes chr3L 20056326 intergenic not near genes chr3L 20056378 intergenic not near genes chr3L_4_20055001 chr3L_20055001 RAL-820 1006 chr3L 20076837 20076867 chr3L 20076974 20077004 11 137 1.0 3.5 2.2 3.4 167 chr3L 20076837 intron sNPF-R - chr3L 20076920 intron sNPF-R - chr3L 20077004 intron sNPF-R - chr3L_11_20075001 chr3L_20075001 RAL-820 1007 chr3L 20086784 20086818 chr3L 20086862 20086896 6 78 1.0 0.0 0.5 4.0 112 chr3L 20086784 intron sNPF-R - chr3L 20086840 intron sNPF-R - chr3L 20086896 intron sNPF-R - chr3L_6_20085001 chr3L_20085001 RAL-820 1008 chr3L 20113479 20113506 chr3L 20113574 20113600 8 95 2.0 3.0 2.5 2.3 121 chr3L 20113479 intergenic not near genes chr3L 20113540 intergenic not near genes chr3L 20113600 intergenic not near genes chr3L_8_20110001 chr3L_20110001 RAL-820 1009 chr3L 20231150 20231171 chr3L 20231281 20231302 5 131 1.5 1.0 1.2 2.3 152 chr3L 20231150 intergenic not near genes chr3L 20231226 intergenic CG13813 + chr3L 20231302 intergenic CG13813 + chr3L_5_20230001 chr3L_20230001 RAL-820 1010 chr3L 20256650 20256667 chr3L 20256745 20256777 8 107 2.5 1.5 2.0 2.7 127 chr3L 20256650 intron rdgC + chr3L 20256714 intron rdgC + chr3L 20256777 intron rdgC + chr3L_8_20255001 chr3L_20255001 RAL-820 1011 chr3L 20257340 20257363 chr3L 20258456 20258479 pogo 12 1116 1.5 3.5 2.5 3.4 1139 chr3L 20257340 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258479 intron rdgC + chr3L_12_20255001 chr3L_20255001 RAL-820 1012 chr3L 20264303 20264339 chr3L 20264389 20264425 7 86 0.5 0.0 0.2 5.8 122 chr3L 20264303 3` UTR rdgC + chr3L 20264364 3` UTR rdgC + chr3L 20264425 3` UTR rdgC + chr3L_7_20260001 chr3L_20260001 RAL-820 1013 chr3L 20444121 20444147 chr3L 20444208 20444234 4 87 2.5 3.5 3.0 1.0 113 chr3L 20444121 intron CG5910 + chr3L 20444178 intron CG5910 + chr3L 20444234 intron CG5910 + chr3L_4_20440001 chr3L_20440001 RAL-820 1014 chr3L 20462588 20462604 chr3L 20462669 20462684 5 81 3.5 4.0 3.8 1.0 96 chr3L 20462588 intron atk - chr3L 20462636 intron atk - chr3L 20462684 intron atk - chr3L_5_20460001 chr3L_20460001 RAL-820 1015 chr3L 20476753 20476781 chr3L 20484352 20484380 springer 7 7599 3.0 1.0 2.0 2.3 7627 chr3L 20476753 3` UTR isoQC + chr3L 20480566 intergenic not near genes chr3L 20484380 3` UTR ZnT77C - chr3L_7_20480001 chr3L_20480001 RAL-820 1016 chr3L 20487663 20487672 chr3L 20488114 20488122 INE-1 4 451 4.5 1.5 3.0 1.0 459 chr3L 20487663 intron ZnT77C - chr3L 20487892 intron ZnT77C - chr3L 20488122 intron ZnT77C - chr3L_4_20485001 chr3L_20485001 RAL-820 1017 chr3L 20563796 20563811 chr3L 20563881 20563896 5 85 2.5 1.5 2.0 1.7 100 chr3L 20563796 intergenic not near genes chr3L 20563846 intergenic not near genes chr3L 20563896 intergenic not near genes chr3L_5_20560001 chr3L_20560001 RAL-820 1018 chr3L 20590064 20590084 chr3L 20590603 20590623 412 4 536 2.5 2.5 2.5 1.1 559 chr3L 20590064 intergenic not near genes chr3L 20590344 intergenic not near genes chr3L 20590623 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-820 1019 chr3L 20603432 20603449 chr3L 20603523 20603540 4 91 0.5 1.5 1.0 2.0 108 chr3L 20603432 intron knrl - chr3L 20603486 intron knrl - chr3L 20603540 intron knrl - chr3L_4_20600001 chr3L_20600001 RAL-820 1020 chr3L 20668454 20668478 chr3L 20668531 20668554 6 76 3.0 2.0 2.5 1.7 100 chr3L 20668454 intergenic not near genes chr3L 20668504 intergenic not near genes chr3L 20668554 intergenic not near genes chr3L_6_20665001 chr3L_20665001 RAL-820 1021 chr3L 20710772 20710792 chr3L 20710849 20710868 4 77 2.0 0.5 1.2 1.8 96 chr3L 20710772 intergenic not near genes chr3L 20710820 intergenic not near genes chr3L 20710868 intergenic not near genes chr3L_4_20710001 chr3L_20710001 RAL-820 1022 chr3L 20849275 20849297 chr3L 20849354 20849376 6 78 2.5 2.5 2.5 1.7 101 chr3L 20849275 intron CG32432 - chr3L 20849326 intron CG32432 - chr3L 20849376 intron CG32432 - chr3L_6_20845001 chr3L_20845001 RAL-820 1023 chr3L 20913747 20913782 chr3L 20913829 20913864 14 82 2.0 5.5 3.8 2.9 117 chr3L 20913747 intergenic CR43930 - chr3L 20913806 intergenic CR43930 - chr3L 20913864 intergenic CR43930 - chr3L_14_20910001 chr3L_20910001 RAL-820 1024 chr3L 20977409 20977440 chr3L 20977535 20977560 6 125 1.5 1.0 1.2 2.7 151 chr3L 20977409 intergenic not near genes chr3L 20977484 intergenic not near genes chr3L 20977560 intergenic not near genes chr3L_6_20975001 chr3L_20975001 RAL-820 1025 chr3L 21014914 21014945 chr3L 21023395 21023403 Tirant 10 8478 2.0 2.5 2.2 3.1 8489 chr3L 21014914 intron skd - chr3L 21019158 intron skd - chr3L 21023403 intron skd - chr3L_10_21015001 chr3L_21015001 RAL-820 1026 chr3L 21158599 21158623 chr3L 21158675 21158699 6 76 1.5 0.5 1.0 3.0 100 chr3L 21158599 intron Ac78C - chr3L 21158649 intron Ac78C - chr3L 21158699 intron Ac78C - chr3L_6_21155001 chr3L_21155001 RAL-820 1027 chr3L 21186049 21186083 chr3L 21186125 21186134 9 70 4.0 4.0 4.0 1.8 85 chr3L 21186049 intron CG42337 - chr3L 21186092 intron CG42337 - chr3L 21186134 intron CG42337 - chr3L_9_21185001 chr3L_21185001 RAL-820 1028 chr3L 21243751 21243761 chr3L 21251309 21251324 412 5 7562 1.0 2.0 1.5 2.0 7573 chr3L 21243751 intron Eip78C + chr3L 21247538 intron Eip78C + chr3L 21251324 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-820 1029 chr3L 21256536 21256564 chr3L 21256630 21256636 10 92 1.0 2.5 1.8 3.6 100 chr3L 21256536 intron Eip78C + chr3L 21256586 intron Eip78C + chr3L 21256636 intron Eip78C + chr3L_10_21255001 chr3L_21255001 RAL-820 1030 chr3L 21306163 21306172 chr3L 21315322 21315331 roo 4 9159 2.5 1.0 1.8 1.4 9168 chr3L 21306163 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310747 intron Pc - chr3L 21315331 3` UTR Pc - chr3L_4_21310001 chr3L_21310001 RAL-820 1031 chr3L 21412182 21412210 chr3L 21412283 21412311 8 101 4.0 2.5 3.2 1.9 129 chr3L 21412182 intron rgn + chr3L 21412246 intron rgn + chr3L 21412311 intron rgn + chr3L_8_21410001 chr3L_21410001 RAL-820 1032 chr3L 21467389 21467417 chr3L 21467518 21467546 11 129 13.0 19.0 16.0 0.6 157 chr3L 21467389 intergenic not near genes chr3L 21467468 intergenic not near genes chr3L 21467546 intergenic not near genes chr3L_11_21465001 chr3L_21465001 RAL-820 1033 chr3L 21498851 21498856 chr3L 21500487 21500491 1360 4 1636 5.5 7.0 6.2 0.6 1640 chr3L 21498851 intron Glg1 - chr3L 21499671 intron Glg1 - chr3L 21500491 intron Glg1 - chr3L_4_21495001 chr3L_21495001 RAL-820 1034 chr3L 21593898 21593915 chr3L 21593975 21593992 6 77 3.5 2.0 2.8 1.6 94 chr3L 21593898 intron TfAP-2 + chr3L 21593945 intron TfAP-2 + chr3L 21593992 intron TfAP-2 + chr3L_6_21590001 chr3L_21590001 RAL-820 1035 chr3L 21749312 21749344 chr3L 21754471 21754503 Doc 8 5156 2.0 2.5 2.2 2.5 5191 chr3L 21749312 intron Syn1 - chr3L 21751908 intron Syn1 - chr3L 21754503 intron Syn1 - chr3L_8_21750001 chr3L_21750001 RAL-820 1036 chr3L 21769060 21769080 chr3L 21769147 21769167 5 87 2.0 1.0 1.5 2.0 107 chr3L 21769060 intron,intron Syn1 -,CG42689 + chr3L 21769114 intron,intron Syn1 -,CG42689 + chr3L 21769167 intron,intron Syn1 -,CG42689 + chr3L_5_21765001 chr3L_21765001 RAL-820 1037 chr3L 21905492 21905514 chr3L 21905594 21905615 10 102 2.0 4.0 3.0 2.5 123 chr3L 21905492 intron mub + chr3L 21905554 intron mub + chr3L 21905615 intron mub + chr3L_10_21905001 chr3L_21905001 RAL-820 1038 chr3L 21970802 21970828 chr3L 21970893 21970919 7 91 3.0 2.5 2.8 1.8 117 chr3L 21970802 intergenic not near genes chr3L 21970860 intergenic not near genes chr3L 21970919 intergenic not near genes chr3L_7_21970001 chr3L_21970001 RAL-820 1039 chr3L 22023217 22023246 chr3L 22023308 22023336 5 91 0.0 3.0 1.5 2.0 119 chr3L 22023217 intergenic not near genes chr3L 22023276 intergenic not near genes chr3L 22023336 intergenic not near genes chr3L_5_22020001 chr3L_22020001 RAL-820 1040 chr3L 22099676 22099709 chr3L 22105862 22105895 3S18 13 6186 3.5 2.5 3.0 3.2 6219 chr3L 22099676 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105895 intergenic not near genes chr3L_13_22100001 chr3L_22100001 RAL-820 1041 chr3L 22124813 22124838 chr3L 22124896 22124921 4 83 3.0 3.0 3.0 1.0 108 chr3L 22124813 intergenic not near genes chr3L 22124867 intergenic not near genes chr3L 22124921 intergenic not near genes chr3L_4_22120001 chr3L_22120001 RAL-820 1042 chr3L 22130501 22130514 chr3L 22130647 22130660 4 146 1.0 1.5 1.2 1.8 159 chr3L 22130501 intergenic not near genes chr3L 22130580 intergenic not near genes chr3L 22130660 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-820 1043 chr3L 22152172 22152206 chr3L 22152255 22152289 9 79 2.0 4.0 3.0 2.2 117 chr3L 22152172 intron olf413 + chr3L 22152230 intron olf413 + chr3L 22152289 intron olf413 + chr3L_9_22150001 chr3L_22150001 RAL-820 1044 chr3L 22411371 22411391 chr3L 22411447 22411468 6 73 4.0 3.0 3.5 1.3 97 chr3L 22411371 intergenic not near genes chr3L 22411420 intergenic not near genes chr3L 22411468 intergenic not near genes chr3L_6_22410001 chr3L_22410001 RAL-820 1045 chr3L 22447200 22447228 chr3L 22447291 22447319 12 90 2.5 1.5 2.0 4.0 119 chr3L 22447200 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447319 intergenic not near genes chr3L_12_22445001 chr3L_22445001 RAL-820 1046 chr3L 22507126 22507155 chr3L 22507213 22507242 8 84 0.5 2.0 1.2 3.6 116 chr3L 22507126 intergenic not near genes chr3L 22507184 intergenic not near genes chr3L 22507242 intergenic not near genes chr3L_8_22505001 chr3L_22505001 RAL-820 1047 chr3L 22543726 22543760 chr3L 22543803 22543836 9 77 2.0 3.5 2.8 2.4 110 chr3L 22543726 intergenic not near genes chr3L 22543781 intergenic not near genes chr3L 22543836 intergenic not near genes chr3L_9_22540001 chr3L_22540001 RAL-820 1048 chr3L 22555778 22555800 chr3L 22563246 22563270 blood 5 7469 3.0 2.5 2.8 1.3 7492 chr3L 22555778 intergenic not near genes chr3L 22559524 intergenic not near genes chr3L 22563270 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-820 1049 chr3L 22577618 22577649 chr3L 22582406 22582437 Doc 15 4788 3.0 5.0 4.0 3.0 4819 chr3L 22577618 intergenic not near genes chr3L 22580028 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_15_22580001 chr3L_22580001 RAL-820 1050 chr3L 22617190 22617213 chr3L 22624642 22624650 blood 8 7450 6.5 2.0 4.2 1.5 7460 chr3L 22617190 intron CG14459 - chr3L 22620920 intron CG14459 - chr3L 22624650 intron CG14459 - chr3L_8_22620001 chr3L_22620001 RAL-820 1051 chr3L 22644835 22644870 chr3L 22645063 22645098 11 228 1.5 0.5 1.0 5.5 263 chr3L 22644835 intergenic CR45381 + chr3L 22644966 intergenic CR45381 + chr3L 22645098 intergenic not near genes chr3L_11_22640001 chr3L_22640001 RAL-820 1052 chr3L 22663212 22663231 chr3L 22663302 22663323 6 92 0.5 2.5 1.5 2.4 111 chr3L 22663212 intergenic not near genes chr3L 22663268 intergenic not near genes chr3L 22663323 intergenic not near genes chr3L_6_22660001 chr3L_22660001 RAL-820 1053 chr3L 22668043 22668066 chr3L 22668119 22668142 8 76 4.0 1.0 2.5 2.3 99 chr3L 22668043 3` UTR CR43270 - chr3L 22668092 3` UTR CR43270 - chr3L 22668142 3` UTR CR43270 - chr3L_8_22665001 chr3L_22665001 RAL-820 1054 chr3L 22682236 22682248 chr3L 22682336 22682348 4 100 2.5 5.5 4.0 0.8 112 chr3L 22682236 intergenic not near genes chr3L 22682292 intergenic not near genes chr3L 22682348 intergenic not near genes chr3L_4_22680001 chr3L_22680001 RAL-820 1055 chr3L 22748951 22748978 chr3L 22749060 22749087 6 109 1.0 3.5 2.2 1.9 136 chr3L 22748951 intergenic CG7369 +,SPoCk + chr3L 22749019 intergenic CG7369 +,SPoCk + chr3L 22749087 intergenic SPoCk +,CG7369 + chr3L_6_22745001 chr3L_22745001 RAL-820 1056 chr3L 22761393 22761415 chr3L 22766827 22766849 Ivk 5 5434 3.5 1.0 2.2 1.6 5456 chr3L 22761393 intron SPoCk + chr3L 22764121 intron SPoCk + chr3L 22766849 intron SPoCk + chr3L_5_22760001 chr3L_22760001 RAL-820 1057 chr3L 22774107 22774140 chr3L 22774202 22774210 8 91 2.5 0.5 1.5 3.2 103 chr3L 22774107 intron SPoCk + chr3L 22774158 intron SPoCk + chr3L 22774210 intron SPoCk + chr3L_8_22770001 chr3L_22770001 RAL-820 1058 chr3L 22848715 22848732 chr3L 22848804 22848821 4 90 3.0 2.5 2.8 1.1 106 chr3L 22848715 intergenic not near genes chr3L 22848768 intergenic not near genes chr3L 22848821 intergenic not near genes chr3L_4_22845001 chr3L_22845001 RAL-820 1059 chr3L 22865983 22865994 chr3L 22867116 22867127 Doc 4 1133 4.5 2.5 3.5 0.9 1144 chr3L 22865983 intron CG33170 + chr3L 22866555 intron CG33170 + chr3L 22867127 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-820 1060 chr3L 22885915 22885943 chr3L 22885992 22886020 9 77 4.5 4.0 4.2 1.7 105 chr3L 22885915 intron slif + chr3L 22885968 intron slif + chr3L 22886020 intron slif + chr3L_9_22885001 chr3L_22885001 RAL-820 1061 chr3L 22901238 22901257 chr3L 22901658 22901676 6 420 2.0 0.5 1.2 2.7 438 chr3L 22901238 intergenic not near genes chr3L 22901457 intergenic BoYb + chr3L 22901676 intergenic BoYb + chr3L_6_22900001 chr3L_22900001 RAL-820 1062 chr3L 19220633 19220638 chr3L 22908066 22908066 13 3687432 22.5 8.0 15.2 0.8 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_13_21060001 chr3L_21060001 RAL-820 1063 chr3L 19220633 19220637 chr3L 22908067 22908067 7 3687432 22.0 8.0 15.0 0.4 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_7_21060001 chr3L_21060001 RAL-820 1064 chr3L 22912780 22912791 chr3L 22912861 22912871 4 81 1.5 4.5 3.0 1.0 91 chr3L 22912780 intron CG12768 + chr3L 22912826 intron CG12768 + chr3L 22912871 intron CG12768 + chr3L_4_22910001 chr3L_22910001 RAL-820 1065 chr3L 22920942 22920961 chr3L 22921029 22921047 4 86 1.0 2.0 1.5 1.6 105 chr3L 22920942 intron CG12768 + chr3L 22920994 intron CG12768 + chr3L 22921047 intron CG12768 + chr3L_4_22920001 chr3L_22920001 RAL-820 1066 chr3L 22943712 22943744 chr3L 22943918 22943950 7 206 2.5 3.5 3.0 1.8 238 chr3L 22943712 intergenic not near genes chr3L 22943831 intergenic not near genes chr3L 22943950 intergenic not near genes chr3L_7_22940001 chr3L_22940001 RAL-820 1067 chr3L 22974362 22974394 chr3L 22974441 22974457 6 76 1.0 3.0 2.0 2.0 95 chr3L 22974362 intergenic not near genes chr3L 22974410 intergenic not near genes chr3L 22974457 intergenic not near genes chr3L_6_22970001 chr3L_22970001 RAL-820 1068 chr3L 22989860 22989893 chr3L 22996834 22996866 297 8 6972 2.0 1.0 1.5 3.2 7006 chr3L 22989860 intergenic not near genes chr3L 22993363 intergenic not near genes chr3L 22996866 intergenic not near genes chr3L_8_22990001 chr3L_22990001 RAL-820 1069 chr3L 23009041 23009069 chr3L 23009180 23009208 4 138 3.0 1.5 2.2 1.2 167 chr3L 23009041 intron nrm + chr3L 23009124 intron nrm + chr3L 23009208 intron nrm + chr3L_4_23005001 chr3L_23005001 RAL-820 1070 chr3L 23213288 23213304 chr3L 23213655 23213660 6 365 1.0 3.5 2.2 1.9 372 chr3L 23213288 intron nAChRalpha4 + chr3L 23213474 intron nAChRalpha4 + chr3L 23213660 intron nAChRalpha4 + chr3L_6_23210001 chr3L_23210001 RAL-820 1071 chr3L 23893204 23893217 chr3L 23893286 23893299 4 82 0.0 1.5 0.8 2.2 95 chr3L 23893204 intron CG40470 - chr3L 23893252 intron CG40470 - chr3L 23893299 intron CG40470 - chr3L_4_23890001 chr3L_23890001 RAL-820 1072 chr3L 24040678 24040696 chr3L 24040811 24040829 5 133 5.0 3.5 4.2 1.0 151 chr3L 24040678 intergenic not near genes chr3L 24040754 intergenic not near genes chr3L 24040829 intergenic not near genes chr3L_5_24040001 chr3L_24040001 RAL-820 1073 chr3L 24168795 24168816 chr3L 24176122 24176142 ZAM 5 7327 5.0 3.0 4.0 1.0 7347 chr3L 24168795 intron Snap25 + chr3L 24172468 intron Snap25 + chr3L 24176142 intron Snap25 + chr3L_5_24170001 chr3L_24170001 RAL-820 1074 chr3L 24363242 24363269 chr3L 24363319 24363345 5 77 0.5 1.0 0.8 2.8 103 chr3L 24363242 intron nvd + chr3L 24363294 intron nvd + chr3L 24363345 intron nvd + chr3L_5_24360001 chr3L_24360001 RAL-820 1075 chr3L 25106582 25106611 chr3L 25106669 25106698 5 87 2.0 0.5 1.2 2.3 116 chr3L 25106582 intergenic not near genes chr3L 25106640 intergenic not near genes chr3L 25106698 intergenic not near genes chr3L_5_25105001 chr3L_25105001 RAL-820 1076 chr3L 25268564 25268592 chr3L 25268645 25268672 6 81 0.5 1.5 1.0 3.0 108 chr3L 25268564 intron CG40467 - chr3L 25268618 intron CG40467 - chr3L 25268672 intron CG40467 - chr3L_6_25265001 chr3L_25265001 RAL-820 1077 chr3L 25464085 25464091 chr3L 25464182 25464189 4 98 14.5 13.5 14.0 0.3 104 chr3L 25464085 intergenic not near genes chr3L 25464137 intergenic not near genes chr3L 25464189 intergenic not near genes chr3L_4_25460001 chr3L_25460001 RAL-820 1078 chr3L 25514874 25514897 chr3L 25514966 25514989 5 91 3.0 2.5 2.8 1.3 115 chr3L 25514874 intron CG41343 - chr3L 25514932 intron CG41343 - chr3L 25514989 intron CG41343 - chr3L_5_25510001 chr3L_25510001 RAL-820 1079 chr3L 25842480 25842499 chr3L 25842566 25842585 7 86 1.0 1.0 1.0 3.5 105 chr3L 25842480 intron CG40178 - chr3L 25842532 intron CG40178 - chr3L 25842585 intron CG40178 - chr3L_7_25840001 chr3L_25840001 RAL-820 1080 chr3L 25886868 25886890 chr3L 25887270 25887293 4 402 1.5 1.5 1.5 1.6 425 chr3L 25886868 intron CG40178 - chr3L 25887080 intron CG40178 - chr3L 25887293 intron CG40178 - chr3L_4_25885001 chr3L_25885001 RAL-820 1081 chr3L 24566079 24566081 chr3L 25889009 25889020 micropia 4 1322932 7.5 12.5 10.0 0.4 1322941 chr3L 24566079 intergenic not near genes chr3L 25227550 intergenic not near genes chr3L 25889020 intron CG40178 - chr3L_4_25225001 chr3L_25225001 RAL-820 1082 chr3L 26694927 26694955 chr3L 26695007 26695035 4 74 1.5 2.5 2.0 1.3 108 chr3L 26694927 intergenic not near genes chr3L 26694981 intergenic not near genes chr3L 26695035 intergenic not near genes chr3L_4_26690001 chr3L_26690001 RAL-820 1083 chr3L 27167949 27167981 chr3L 27168069 27168101 6 119 2.5 1.5 2.0 2.0 152 chr3L 27167949 intergenic not near genes chr3L 27168025 intergenic not near genes chr3L 27168101 intergenic not near genes chr3L_6_27165001 chr3L_27165001 RAL-820 1084 chr3L 27368882 27368907 chr3L 27369427 27369452 5 545 2.0 1.5 1.8 1.8 570 chr3L 27368882 intron Dbp80 + chr3L 27369167 intron Dbp80 + chr3L 27369452 intron Dbp80 + chr3L_5_27365001 chr3L_27365001 RAL-820 1085 chr3L 27390689 27390707 chr3L 27390767 27390786 5 78 18.0 19.0 18.5 0.3 97 chr3L 27390689 intron Dbp80 + chr3L 27390738 intron Dbp80 + chr3L 27390786 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-820 1086 chr3L 27727632 27727659 chr3L 27728739 27728759 G-element 6 1103 2.0 3.0 2.5 1.7 1127 chr3L 27727632 intergenic not near genes chr3L 27728196 intergenic not near genes chr3L 27728759 intergenic not near genes chr3L_6_27725001 chr3L_27725001 RAL-820 1087 chr3R 1443433 1443451 chr3R 1443509 1443527 4 75 0.5 1.0 0.8 2.2 94 chr3R 1443433 intron CG40155 + chr3R 1443480 intron CG40155 + chr3R 1443527 intron CG40155 + chr3R_4_1440001 chr3R_1440001 RAL-820 1088 chr3R 1953157 1953167 chr3R 1958542 1958552 Cr1a 5 5385 19.0 14.5 16.8 0.3 5395 chr3R 1953157 intergenic not near genes chr3R 1955854 intergenic not near genes chr3R 1958552 intergenic not near genes chr3R_5_1955001 chr3R_1955001 RAL-820 1089 chr3R 2534155 2534164 chr3R 2541706 2541733 9 7561 8.5 13.5 11.0 0.8 7578 chr3R 2534155 intergenic not near genes chr3R 2537944 intergenic not near genes chr3R 2541733 intergenic not near genes chr3R_9_2535001 chr3R_2535001 RAL-820 1090 chr3R 4012516 4012528 chr3R 4012604 4012615 6 88 2.0 2.5 2.2 1.9 99 chr3R 4012516 intergenic not near genes chr3R 4012566 intergenic not near genes chr3R 4012615 intergenic not near genes chr3R_6_4010001 chr3R_4010001 RAL-820 1091 chr3R 4206074 4206082 chr3R 4211649 4211657 mdg3 4 5575 4.0 3.5 3.8 0.8 5583 chr3R 4206074 intron CG14636 - chr3R 4208866 intron CG14636 - chr3R 4211657 intron CG14636 - chr3R_4_4205001 chr3R_4205001 RAL-820 1092 chr3R 4366767 4366789 chr3R 4375148 4375172 roo 8 8383 1.0 3.0 2.0 2.7 8405 chr3R 4366767 3` UTR CG1090 + chr3R 4370970 intergenic not near genes chr3R 4375172 5` UTR CR44922 + chr3R_8_4370001 chr3R_4370001 RAL-820 1093 chr3R 4408414 4408432 chr3R 4412718 4412736 Juan 5 4304 2.5 1.5 2.0 1.7 4322 chr3R 4408414 intron CG32944 - chr3R 4410575 intron CG32944 - chr3R 4412736 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-820 1094 chr3R 4420801 4420833 chr3R 4420877 4420909 7 76 1.5 2.0 1.8 2.5 108 chr3R 4420801 intergenic not near genes chr3R 4420855 intergenic not near genes chr3R 4420909 intergenic not near genes chr3R_7_4420001 chr3R_4420001 RAL-820 1095 chr3R 4527592 4527611 chr3R 4528142 4528160 4 550 0.5 1.0 0.8 2.2 568 chr3R 4527592 intron CG34357 - chr3R 4527876 intron CG34357 - chr3R 4528160 intron CG34357 - chr3R_4_4525001 chr3R_4525001 RAL-820 1096 chr3R 4753240 4753264 chr3R 4757543 4757564 F-element 8 4299 4.0 4.0 4.0 1.6 4324 chr3R 4753240 intron,intron atms +,CG44098 - chr3R 4755402 intron,intron atms +,CG44098 - chr3R 4757564 intron,exon atms +,CG44098 - chr3R_8_4755001 chr3R_4755001 RAL-820 1097 chr3R 4804503 4804528 chr3R 4805228 4805253 6 725 3.0 3.0 3.0 1.5 750 chr3R 4804503 intron ctrip - chr3R 4804878 intron ctrip - chr3R 4805253 intron ctrip - chr3R_6_4800001 chr3R_4800001 RAL-820 1098 chr3R 4861566 4861597 chr3R 4861647 4861657 20 79 1.5 4.0 2.8 5.3 91 chr3R 4861566 intron opa + chr3R 4861612 intron opa + chr3R 4861657 intron opa + chr3R_20_4860001 chr3R_4860001 RAL-820 1099 chr3R 4887479 4887505 chr3R 4894856 4894878 rover 5 7376 3.0 2.0 2.5 1.4 7399 chr3R 4887479 intergenic not near genes chr3R 4891178 intergenic not near genes chr3R 4894878 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-820 1100 chr3R 4966007 4966029 chr3R 4966099 4966121 5 92 2.5 2.5 2.5 1.4 114 chr3R 4966007 intron CG1124 + chr3R 4966064 intron CG1124 + chr3R 4966121 intron CG1124 + chr3R_5_4965001 chr3R_4965001 RAL-820 1101 chr3R 5000288 5000321 chr3R 5000395 5000428 12 107 3.0 3.0 3.0 3.0 140 chr3R 5000288 intron CG2022 - chr3R 5000358 intron CG2022 - chr3R 5000428 intron CG2022 - chr3R_12_5000001 chr3R_5000001 RAL-820 1102 chr3R 5038745 5038779 chr3R 5038827 5038861 7 82 3.5 2.5 3.0 1.8 116 chr3R 5038745 intergenic not near genes chr3R 5038803 intergenic not near genes chr3R 5038861 intergenic not near genes chr3R_7_5035001 chr3R_5035001 RAL-820 1103 chr3R 5045847 5045864 chr3R 5052949 5052966 HMS-Beagle 7 7102 4.5 0.0 2.2 2.2 7119 chr3R 5045847 intron CR43635 - chr3R 5049406 intergenic not near genes chr3R 5052966 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-820 1104 chr3R 5055363 5055388 chr3R 5055577 5055602 6 214 1.5 3.5 2.5 1.7 239 chr3R 5055363 intergenic not near genes chr3R 5055482 intergenic not near genes chr3R 5055602 intergenic not near genes chr3R_6_5055001 chr3R_5055001 RAL-820 1105 chr3R 5067980 5068009 chr3R 5073497 5073526 mdg3 6 5516 5.0 2.5 3.8 1.2 5546 chr3R 5067980 intergenic not near genes chr3R 5070753 intergenic not near genes chr3R 5073526 intergenic not near genes chr3R_6_5070001 chr3R_5070001 RAL-820 1106 chr3R 5236218 5236238 chr3R 5236346 5236366 7 128 1.0 1.0 1.0 3.5 148 chr3R 5236218 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236292 3` UTR rtp - chr3R 5236366 3` UTR rtp - chr3R_7_5235001 chr3R_5235001 RAL-820 1107 chr3R 5250879 5250916 chr3R 5250991 5251026 8 110 1.0 0.0 0.5 5.3 147 chr3R 5250879 intron CG12163 - chr3R 5250952 intron CG12163 - chr3R 5251026 intron CG12163 - chr3R_8_5250001 chr3R_5250001 RAL-820 1108 chr3R 5278090 5278123 chr3R 5278171 5278204 9 80 2.0 2.5 2.2 2.8 114 chr3R 5278090 intron mtd - chr3R 5278147 intron mtd - chr3R 5278204 intron mtd - chr3R_9_5275001 chr3R_5275001 RAL-820 1109 chr3R 5338399 5338428 chr3R 5343575 5343605 Rt1c 12 5176 2.5 6.0 4.2 2.3 5206 chr3R 5338399 intron mtd - chr3R 5341002 intron mtd - chr3R 5343605 intron mtd - chr3R_12_5340001 chr3R_5340001 RAL-820 1110 chr3R 5746015 5746031 chr3R 5746256 5746272 pogo 4 241 4.0 3.0 3.5 0.9 257 chr3R 5746015 3` UTR Madm + chr3R 5746144 3` UTR Madm + chr3R 5746272 3` UTR Madm + chr3R_4_5745001 chr3R_5745001 RAL-820 1111 chr3R 5746039 5746045 chr3R 5746255 5746286 pogo 5 233 3.0 3.0 3.0 1.2 247 chr3R 5746039 3` UTR Madm + chr3R 5746162 3` UTR Madm + chr3R 5746286 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-820 1112 chr3R 5747030 5747046 chr3R 5753221 5753237 diver 4 6191 1.0 1.5 1.2 1.8 6207 chr3R 5747030 intergenic Madm + chr3R 5750134 intergenic not near genes chr3R 5753237 intergenic CG2091 - chr3R_4_5750001 chr3R_5750001 RAL-820 1113 chr3R 5765629 5765657 chr3R 5765713 5765741 13 83 3.0 4.0 3.5 2.9 112 chr3R 5765629 intron CG2082 - chr3R 5765685 intron CG2082 - chr3R 5765741 intron CG2082 - chr3R_13_5765001 chr3R_5765001 RAL-820 1114 chr3R 5769241 5769262 chr3R 5769338 5769360 11 97 2.5 4.0 3.2 2.6 119 chr3R 5769241 intron CG2082 - chr3R 5769300 intron CG2082 - chr3R 5769360 intron CG2082 - chr3R_11_5765001 chr3R_5765001 RAL-820 1115 chr3R 5772378 5772408 chr3R 5772536 5772566 6 158 2.0 2.0 2.0 2.0 188 chr3R 5772378 intron CG2082 - chr3R 5772472 intron CG2082 - chr3R 5772566 intron CG2082 - chr3R_6_5770001 chr3R_5770001 RAL-820 1116 chr3R 5775918 5775952 chr3R 5776566 5776600 12 646 1.5 3.0 2.2 3.8 682 chr3R 5775918 intron CG2082 - chr3R 5776259 intron CG2082 - chr3R 5776600 intron CG2082 - chr3R_12_5775001 chr3R_5775001 RAL-820 1117 chr3R 5822375 5822413 chr3R 5823542 5823580 1360 6 1167 4.0 2.0 3.0 1.5 1205 chr3R 5822375 3` UTR CG2023 - chr3R 5822978 3` UTR CG2023 - chr3R 5823580 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-820 1118 chr3R 5927567 5927582 chr3R 5927807 5927822 pogo 4 240 4.0 2.5 3.2 1.0 255 chr3R 5927567 intron CG34113 - chr3R 5927694 intron CG34113 - chr3R 5927822 intron CG34113 - chr3R_4_5925001 chr3R_5925001 RAL-820 1119 chr3R 5931855 5931876 chr3R 5931931 5931951 4 76 2.0 3.0 2.5 1.1 96 chr3R 5931855 intron CG34113 - chr3R 5931903 intron CG34113 - chr3R 5931951 intron CG34113 - chr3R_4_5930001 chr3R_5930001 RAL-820 1120 chr3R 5968178 5968194 chr3R 5968257 5968274 4 78 2.5 0.5 1.5 1.6 96 chr3R 5968178 intergenic not near genes chr3R 5968226 intergenic not near genes chr3R 5968274 intergenic not near genes chr3R_4_5965001 chr3R_5965001 RAL-820 1121 chr3R 6015975 6015995 chr3R 6024476 6024496 Tirant 5 8501 2.0 2.5 2.2 1.6 8521 chr3R 6015975 intergenic not near genes chr3R 6020236 intergenic not near genes chr3R 6024496 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-820 1122 chr3R 6051886 6051908 chr3R 6051967 6051989 5 81 0.5 1.0 0.8 2.8 103 chr3R 6051886 intergenic not near genes chr3R 6051938 intergenic not near genes chr3R 6051989 intergenic not near genes chr3R_5_6050001 chr3R_6050001 RAL-820 1123 chr3R 6121178 6121185 chr3R 6121396 6121403 BS 5 218 0.0 2.0 1.0 2.5 225 chr3R 6121178 intergenic not near genes chr3R 6121290 intergenic not near genes chr3R 6121403 intergenic not near genes chr3R_5_6120001 chr3R_6120001 RAL-820 1124 chr3R 6158517 6158540 chr3R 6167098 6167123 Tirant 5 8579 4.0 3.5 3.8 1.0 8606 chr3R 6158517 intergenic not near genes chr3R 6162820 intergenic not near genes chr3R 6167123 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-820 1125 chr3R 6175172 6175206 chr3R 6182444 6182464 HMS-Beagle2 5 7269 1.5 1.0 1.2 2.3 7292 chr3R 6175172 intergenic Osi1 + chr3R 6178818 intron CR45194 + chr3R 6182464 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-820 1126 chr3R 6283303 6283330 chr3R 6283390 6283417 6 87 3.5 0.5 2.0 2.0 114 chr3R 6283303 intergenic not near genes chr3R 6283360 intergenic not near genes chr3R 6283417 intergenic not near genes chr3R_6_6280001 chr3R_6280001 RAL-820 1127 chr3R 6310637 6310666 chr3R 6310875 6310904 4 236 2.5 2.5 2.5 1.1 267 chr3R 6310637 exon CG31560 + chr3R 6310770 exon CG31560 + chr3R 6310904 intergenic CG31560 + chr3R_4_6310001 chr3R_6310001 RAL-820 1128 chr3R 6604654 6604669 chr3R 6604733 6604748 12 78 5.0 2.0 3.5 2.7 94 chr3R 6604654 intergenic not near genes chr3R 6604701 intergenic not near genes chr3R 6604748 intergenic not near genes chr3R_12_6600001 chr3R_6600001 RAL-820 1129 chr3R 6737503 6737530 chr3R 6739287 6739317 Doc 10 1786 3.5 3.0 3.2 2.4 1814 chr3R 6737503 intron pb - chr3R 6738410 intron pb - chr3R 6739317 intron pb - chr3R_10_6735001 chr3R_6735001 RAL-820 1130 chr3R 6807274 6807285 chr3R 6807356 6807367 4 82 2.0 0.5 1.2 1.8 93 chr3R 6807274 intergenic not near genes chr3R 6807320 intergenic not near genes chr3R 6807367 intergenic not near genes chr3R_4_6805001 chr3R_6805001 RAL-820 1131 chr3R 6862225 6862251 chr3R 6862312 6862337 8 87 2.0 0.5 1.2 3.6 112 chr3R 6862225 intergenic not near genes chr3R 6862281 intergenic not near genes chr3R 6862337 intergenic not near genes chr3R_8_6860001 chr3R_6860001 RAL-820 1132 chr3R 6891242 6891270 chr3R 6891318 6891346 4 76 3.0 5.0 4.0 0.8 104 chr3R 6891242 intergenic not near genes chr3R 6891294 intergenic not near genes chr3R 6891346 intergenic not near genes chr3R_4_6890001 chr3R_6890001 RAL-820 1133 chr3R 6961181 6961191 chr3R 6961259 6961269 4 78 2.0 5.0 3.5 0.9 88 chr3R 6961181 intron Antp - chr3R 6961225 intron Antp - chr3R 6961269 intron Antp - chr3R_4_6960001 chr3R_6960001 RAL-820 1134 chr3R 7012203 7012231 chr3R 7012281 7012309 10 78 3.0 1.0 2.0 3.3 106 chr3R 7012203 intergenic not near genes chr3R 7012256 intergenic not near genes chr3R 7012309 intergenic not near genes chr3R_10_7010001 chr3R_7010001 RAL-820 1135 chr3R 7103930 7103956 chr3R 7104029 7104055 7 99 3.0 0.5 1.8 2.5 125 chr3R 7103930 intron Alh - chr3R 7103992 intron Alh - chr3R 7104055 intron Alh - chr3R_7_7100001 chr3R_7100001 RAL-820 1136 chr3R 7206879 7206906 chr3R 7206968 7206994 12 88 3.0 4.5 3.8 2.5 115 chr3R 7206879 intergenic CG1288 - chr3R 7206936 intergenic CG1288 - chr3R 7206994 intergenic CG1288 - chr3R_12_7205001 chr3R_7205001 RAL-820 1137 chr3R 7639790 7639811 chr3R 7639930 7639948 5 140 1.5 2.0 1.8 1.8 158 chr3R 7639790 intergenic CG34127 - chr3R 7639869 intergenic CG34127 - chr3R 7639948 intergenic not near genes chr3R_5_7635001 chr3R_7635001 RAL-820 1138 chr3R 7682697 7682712 chr3R 7682973 7682988 4 276 4.0 3.0 3.5 0.9 291 chr3R 7682697 intron Nlg1 + chr3R 7682842 intron Nlg1 + chr3R 7682988 intron Nlg1 + chr3R_4_7680001 chr3R_7680001 RAL-820 1139 chr3R 7694580 7694609 chr3R 7713641 7713670 invader3 4 19061 0.5 1.0 0.8 2.2 19090 chr3R 7694580 3` UTR Nlg1 + chr3R 7704125 intergenic not near genes chr3R 7713670 intergenic not near genes chr3R_4_7700001 chr3R_7700001 RAL-820 1140 chr3R 7726154 7726188 chr3R 7726230 7726265 12 74 1.5 4.0 2.8 3.2 111 chr3R 7726154 intergenic not near genes chr3R 7726210 intergenic not near genes chr3R 7726265 intergenic not near genes chr3R_12_7725001 chr3R_7725001 RAL-820 1141 chr3R 7729464 7729497 chr3R 7737402 7737435 Stalker2 9 7937 2.0 2.0 2.0 3.0 7971 chr3R 7729464 intergenic not near genes chr3R 7733450 intergenic not near genes chr3R 7737435 intergenic not near genes chr3R_9_7730001 chr3R_7730001 RAL-820 1142 chr3R 7955934 7955952 chr3R 7956011 7956029 6 77 3.5 1.5 2.5 1.7 95 chr3R 7955934 intron dsx - chr3R 7955982 intron dsx - chr3R 7956029 intron dsx - chr3R_6_7955001 chr3R_7955001 RAL-820 1143 chr3R 7965311 7965344 chr3R 7965399 7965432 7 88 0.5 2.0 1.2 3.2 121 chr3R 7965311 intron dsx - chr3R 7965372 intron dsx - chr3R 7965432 intron dsx - chr3R_7_7965001 chr3R_7965001 RAL-820 1144 chr3R 7973315 7973342 chr3R 7974376 7974406 1360 4 1063 3.5 1.0 2.2 1.2 1091 chr3R 7973315 intergenic not near genes chr3R 7973860 intergenic not near genes chr3R 7974406 intergenic CD98hc - chr3R_4_7970001 chr3R_7970001 RAL-820 1145 chr3R 8049052 8049058 chr3R 8049626 8049632 6 574 4.0 2.5 3.2 1.4 580 chr3R 8049052 intron CG43060 + chr3R 8049342 intron,intron CG43060 +,CG43618 + chr3R 8049632 intron CG43060 + chr3R_6_8045001 chr3R_8045001 RAL-820 1146 chr3R 8070910 8070928 chr3R 8070991 8071009 4 81 3.5 5.0 4.2 0.8 99 chr3R 8070910 intron mAChR-B + chr3R 8070960 intron mAChR-B + chr3R 8071009 intron mAChR-B + chr3R_4_8070001 chr3R_8070001 RAL-820 1147 chr3R 8094415 8094435 chr3R 8099720 8099740 Transpac 5 5305 2.5 1.0 1.8 1.8 5325 chr3R 8094415 intron CG7900 + chr3R 8097078 intron CG7900 + chr3R 8099740 intron CG7900 + chr3R_5_8095001 chr3R_8095001 RAL-820 1148 chr3R 8101768 8101781 chr3R 8104848 8104865 G2 4 3083 4.0 1.0 2.5 1.1 3097 chr3R 8101768 exon CG7900 + chr3R 8103316 intron CG7900 + chr3R 8104865 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-820 1149 chr3R 8182651 8182684 chr3R 8182745 8182778 9 94 1.0 0.5 0.8 5.0 127 chr3R 8182651 intergenic not near genes chr3R 8182714 intergenic not near genes chr3R 8182778 intergenic not near genes chr3R_9_8180001 chr3R_8180001 RAL-820 1150 chr3R 8207558 8207582 chr3R 8208402 8208426 F-element 5 843 2.0 2.5 2.2 1.6 868 chr3R 8207558 intergenic not near genes chr3R 8207992 intergenic not near genes chr3R 8208426 intergenic not near genes chr3R_5_8205001 chr3R_8205001 RAL-820 1151 chr3R 8226943 8226967 chr3R 8227029 8227053 7 85 3.0 5.5 4.2 1.3 110 chr3R 8226943 3` UTR CR45551 - chr3R 8226998 3` UTR CR45551 - chr3R 8227053 3` UTR CR45551 - chr3R_7_8225001 chr3R_8225001 RAL-820 1152 chr3R 8293637 8293666 chr3R 8293717 8293746 6 80 1.5 1.5 1.5 2.4 109 chr3R 8293637 intergenic CG31463 +,CG9626 - chr3R 8293692 intergenic CG31463 +,CG9626 - chr3R 8293746 intergenic CG9626 -,CG31463 + chr3R_6_8290001 chr3R_8290001 RAL-820 1153 chr3R 8294005 8294020 chr3R 8294183 8294198 4 178 2.5 6.0 4.2 0.8 193 chr3R 8294005 3` UTR CG9626 - chr3R 8294102 3` UTR CG9626 - chr3R 8294198 3` UTR CG9626 - chr3R_4_8290001 chr3R_8290001 RAL-820 1154 chr3R 8339246 8339247 chr3R 21907534 21907536 18 13568289 12.5 15.0 13.8 1.2 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_18_15120001 chr3R_15120001 RAL-820 1155 chr3R 8403005 8403040 chr3R 8412171 8412206 roo 15 9165 4.0 1.5 2.8 3.9 9201 chr3R 8403005 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_15_8405001 chr3R_8405001 RAL-820 1156 chr3R 8424273 8424286 chr3R 8424356 8424367 6 82 1.0 1.0 1.0 3.0 94 chr3R 8424273 intron CG45263 - chr3R 8424320 intron CG45263 - chr3R 8424367 intron CG45263 - chr3R_6_8420001 chr3R_8420001 RAL-820 1157 chr3R 8426190 8426226 chr3R 8426275 8426309 10 84 5.0 6.0 5.5 1.5 119 chr3R 8426190 intron CG45263 - chr3R 8426250 intron CG45263 - chr3R 8426309 intron CG45263 - chr3R_10_8425001 chr3R_8425001 RAL-820 1158 chr3R 8541338 8541369 chr3R 8541419 8541450 11 81 4.0 3.0 3.5 2.4 112 chr3R 8541338 intergenic not near genes chr3R 8541394 intergenic not near genes chr3R 8541450 intergenic not near genes chr3R_11_8540001 chr3R_8540001 RAL-820 1159 chr3R 8552372 8552398 chr3R 8552451 8552468 8 78 1.0 2.5 1.8 2.9 96 chr3R 8552372 intergenic Or85d + chr3R 8552420 intergenic Or85d + chr3R 8552468 intergenic Or85d + chr3R_8_8550001 chr3R_8550001 RAL-820 1160 chr3R 8570478 8570511 chr3R 8575114 8575147 HMS-Beagle 11 4634 1.0 2.5 1.8 3.9 4669 chr3R 8570478 intergenic not near genes chr3R 8572812 intergenic not near genes chr3R 8575147 intergenic not near genes chr3R_11_8570001 chr3R_8570001 RAL-820 1161 chr3R 8601769 8601799 chr3R 8610922 8610952 roo 6 9151 2.0 3.0 2.5 1.7 9183 chr3R 8601769 intron 5-HT2B + chr3R 8606360 intron 5-HT2B + chr3R 8610952 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-820 1162 chr3R 8614791 8614817 chr3R 8614994 8615020 12 202 0.0 2.0 1.0 6.0 229 chr3R 8614791 intron 5-HT2B + chr3R 8614906 intron 5-HT2B + chr3R 8615020 intron 5-HT2B + chr3R_12_8610001 chr3R_8610001 RAL-820 1163 chr3R 8707364 8707390 chr3R 8709805 8709828 jockey 6 2440 4.5 2.5 3.5 1.3 2464 chr3R 8707364 intergenic not near genes chr3R 8708596 intergenic not near genes chr3R 8709828 intergenic not near genes chr3R_6_8705001 chr3R_8705001 RAL-820 1164 chr3R 8894875 8894893 chr3R 8896031 8896049 1360 5 1156 1.0 3.5 2.2 1.6 1174 chr3R 8894875 intron pyd - chr3R 8895462 intron pyd - chr3R 8896049 intron pyd - chr3R_5_8895001 chr3R_8895001 RAL-820 1165 chr3R 9111491 9111512 chr3R 9111727 9111748 7 235 1.5 3.0 2.2 2.2 257 chr3R 9111491 intron pum - chr3R 9111620 intron pum - chr3R 9111748 intron pum - chr3R_7_9110001 chr3R_9110001 RAL-820 1166 chr3R 9141140 9141172 chr3R 9141224 9141256 5 84 0.5 3.5 2.0 1.7 116 chr3R 9141140 intron pum - chr3R 9141198 intron pum - chr3R 9141256 intron pum - chr3R_5_9140001 chr3R_9140001 RAL-820 1167 chr3R 9260238 9260265 chr3R 9260325 9260351 7 87 4.0 2.0 3.0 1.8 113 chr3R 9260238 exon Ibf1 + chr3R 9260294 3` UTR Ibf1 + chr3R 9260351 3` UTR Ibf1 + chr3R_7_9260001 chr3R_9260001 RAL-820 1168 chr3R 9278778 9278809 chr3R 9284038 9284069 Rt1a 8 5259 2.5 3.0 2.8 2.1 5291 chr3R 9278778 intergenic not near genes chr3R 9281424 intergenic not near genes chr3R 9284069 intergenic not near genes chr3R_8_9280001 chr3R_9280001 RAL-820 1169 chr3R 9319577 9319607 chr3R 9320012 9320042 jockey 5 435 4.0 2.0 3.0 1.2 465 chr3R 9319577 intron CG8861 - chr3R 9319810 intron CG8861 - chr3R 9320042 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-820 1170 chr3R 9361820 9361842 chr3R 9362061 9362083 pogo 5 241 1.0 1.5 1.2 2.3 263 chr3R 9361820 3` UTR CG45050 + chr3R 9361952 3` UTR CG45050 + chr3R 9362083 3` UTR CG45050 + chr3R_5_9360001 chr3R_9360001 RAL-820 1171 chr3R 9527737 9527771 chr3R 9527817 9527851 10 78 0.0 0.5 0.2 8.3 114 chr3R 9527737 intergenic CG8176 +,by - chr3R 9527794 intergenic by - chr3R 9527851 intergenic by - chr3R_10_9525001 chr3R_9525001 RAL-820 1172 chr3R 9647507 9647525 chr3R 9647753 9647771 8 245 1.5 2.0 1.8 2.9 264 chr3R 9647507 intron Dh44 + chr3R 9647639 intron Dh44 + chr3R 9647771 intron Dh44 + chr3R_8_9645001 chr3R_9645001 RAL-820 1173 chr3R 9702259 9702287 chr3R 9702335 9702363 14 75 2.5 1.0 1.8 5.0 104 chr3R 9702259 intron Unc-115a - chr3R 9702311 intron Unc-115a - chr3R 9702363 intron Unc-115a - chr3R_14_9700001 chr3R_9700001 RAL-820 1174 chr3R 9877199 9877232 chr3R 9877275 9877308 7 76 1.5 0.5 1.0 3.5 109 chr3R 9877199 intron,intron Glut4EF +,CR45029 - chr3R 9877254 intron,intron Glut4EF +,CR45029 - chr3R 9877308 intron,intron Glut4EF +,CR45029 - chr3R_7_9875001 chr3R_9875001 RAL-820 1175 chr3R 9996315 9996323 chr3R 9996653 9996661 5 338 4.0 2.5 3.2 1.2 346 chr3R 9996315 exon Gr85a - chr3R 9996488 exon Gr85a - chr3R 9996661 exon Gr85a - chr3R_5_9995001 chr3R_9995001 RAL-820 1176 chr3R 10021494 10021514 chr3R 10021583 10021602 6 89 1.5 3.5 2.5 1.7 108 chr3R 10021494 intron Mical - chr3R 10021548 intron Mical - chr3R 10021602 intron Mical - chr3R_6_10020001 chr3R_10020001 RAL-820 1177 chr3R 10231789 10231805 chr3R 10237366 10237382 mdg3 4 5577 1.5 3.5 2.5 1.1 5593 chr3R 10231789 intron CG42795 + chr3R 10234586 intron CG42795 + chr3R 10237382 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-820 1178 chr3R 10430673 10430708 chr3R 10430762 10430797 7 89 2.5 1.0 1.8 2.5 124 chr3R 10430673 intergenic not near genes chr3R 10430735 intergenic not near genes chr3R 10430797 intergenic not near genes chr3R_7_10430001 chr3R_10430001 RAL-820 1179 chr3R 10651816 10651837 chr3R 10651914 10651936 6 99 0.0 1.5 0.8 3.3 120 chr3R 10651816 intergenic not near genes chr3R 10651876 intergenic not near genes chr3R 10651936 intergenic not near genes chr3R_6_10650001 chr3R_10650001 RAL-820 1180 chr3R 10723766 10723788 chr3R 10723857 10723880 6 92 3.5 1.0 2.2 1.9 114 chr3R 10723766 intergenic not near genes chr3R 10723823 intergenic not near genes chr3R 10723880 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-820 1181 chr3R 10732326 10732343 chr3R 10733198 10733215 9 872 2.5 3.0 2.8 2.4 889 chr3R 10732326 intergenic not near genes chr3R 10732770 intergenic not near genes chr3R 10733215 intergenic not near genes chr3R_9_10730001 chr3R_10730001 RAL-820 1182 chr3R 10748098 10748122 chr3R 10748261 10748287 4 164 1.5 1.0 1.2 1.8 189 chr3R 10748098 intron TkR86C - chr3R 10748192 intron TkR86C - chr3R 10748287 intron TkR86C - chr3R_4_10745001 chr3R_10745001 RAL-820 1183 chr3R 10785817 10785841 chr3R 10785893 10785920 4 78 0.5 2.5 1.5 1.6 103 chr3R 10785817 intron Rbp1 + chr3R 10785868 intron Rbp1 + chr3R 10785920 intron Rbp1 + chr3R_4_10785001 chr3R_10785001 RAL-820 1184 chr3R 10791159 10791183 chr3R 10791238 10791261 5 79 2.5 1.5 2.0 1.7 102 chr3R 10791159 intergenic Mcm5 + chr3R 10791210 intergenic Mcm5 + chr3R 10791261 intergenic Mcm5 + chr3R_5_10790001 chr3R_10790001 RAL-820 1185 chr3R 10919692 10919718 chr3R 10919769 10919796 11 77 3.5 4.0 3.8 2.3 104 chr3R 10919692 intergenic not near genes chr3R 10919744 intergenic not near genes chr3R 10919796 intergenic not near genes chr3R_11_10915001 chr3R_10915001 RAL-820 1186 chr3R 10920043 10920076 chr3R 10920121 10920154 10 78 1.5 2.5 2.0 3.3 111 chr3R 10920043 intergenic not near genes chr3R 10920098 intergenic not near genes chr3R 10920154 intergenic not near genes chr3R_10_10920001 chr3R_10920001 RAL-820 1187 chr3R 11102337 11102355 chr3R 11102411 11102436 8 80 6.0 4.5 5.2 1.3 99 chr3R 11102337 intergenic not near genes chr3R 11102386 intergenic not near genes chr3R 11102436 intergenic not near genes chr3R_8_11100001 chr3R_11100001 RAL-820 1188 chr3R 11172808 11172820 chr3R 11172899 11172910 4 91 5.0 2.5 3.8 0.8 102 chr3R 11172808 intergenic Ugt35a - chr3R 11172859 intergenic Ugt35a - chr3R 11172910 intergenic Ugt35a - chr3R_4_11170001 chr3R_11170001 RAL-820 1189 chr3R 11220289 11220313 chr3R 11220403 11220432 9 118 2.0 6.0 4.0 1.8 143 chr3R 11220289 3` UTR CG6693 - chr3R 11220360 3` UTR CG6693 - chr3R 11220432 3` UTR CG6693 - chr3R_9_11220001 chr3R_11220001 RAL-820 1190 chr3R 11285904 11285932 chr3R 11286089 11286118 8 186 2.0 1.5 1.8 2.9 214 chr3R 11285904 intron CR31386 - chr3R 11286011 intron CR31386 - chr3R 11286118 intron CR31386 - chr3R_8_11285001 chr3R_11285001 RAL-820 1191 chr3R 11324599 11324625 chr3R 11325265 11325270 10 666 2.5 4.0 3.2 2.4 671 chr3R 11324599 intergenic not near genes chr3R 11324934 intergenic not near genes chr3R 11325270 intergenic not near genes chr3R_10_11320001 chr3R_11320001 RAL-820 1192 chr3R 11325343 11325365 chr3R 11325438 11325456 4 94 6.5 5.5 6.0 0.6 113 chr3R 11325343 intergenic not near genes chr3R 11325400 intergenic not near genes chr3R 11325456 intergenic not near genes chr3R_4_11325001 chr3R_11325001 RAL-820 1193 chr3R 11342541 11342566 chr3R 11342617 11342641 8 76 3.0 1.5 2.2 2.5 100 chr3R 11342541 intron pros + chr3R 11342591 intron pros + chr3R 11342641 intron pros + chr3R_8_11340001 chr3R_11340001 RAL-820 1194 chr3R 11379237 11379262 chr3R 11388392 11388417 roo 9 9155 3.0 2.0 2.5 2.6 9180 chr3R 11379237 intron pros + chr3R 11383827 intron pros + chr3R 11388417 intron pros + chr3R_9_11380001 chr3R_11380001 RAL-820 1195 chr3R 11509963 11509984 chr3R 11510039 11510062 4 77 1.5 4.5 3.0 1.0 99 chr3R 11509963 intergenic not near genes chr3R 11510012 intergenic not near genes chr3R 11510062 intergenic not near genes chr3R_4_11510001 chr3R_11510001 RAL-820 1196 chr3R 11664806 11664811 chr3R 11664898 11664903 4 92 1.0 3.5 2.2 1.2 97 chr3R 11664806 intron CG42327 + chr3R 11664854 intron CG42327 + chr3R 11664903 intron CG42327 + chr3R_4_11660001 chr3R_11660001 RAL-820 1197 chr3R 11694730 11694741 chr3R 11694823 11694834 4 93 3.5 2.5 3.0 1.0 104 chr3R 11694730 intergenic Fer3 - chr3R 11694782 intergenic Fer3 - chr3R 11694834 intergenic not near genes chr3R_4_11690001 chr3R_11690001 RAL-820 1198 chr3R 11734162 11734189 chr3R 11734280 11734307 7 119 2.0 0.0 1.0 3.5 145 chr3R 11734162 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734307 intergenic not near genes chr3R_7_11730001 chr3R_11730001 RAL-820 1199 chr3R 11841065 11841096 chr3R 11846256 11846287 BS 7 5190 3.0 5.5 4.2 1.3 5222 chr3R 11841065 intron CG6959 - chr3R 11843676 intron CG6959 - chr3R 11846287 intron CG6959 - chr3R_7_11840001 chr3R_11840001 RAL-820 1200 chr3R 11853434 11853471 chr3R 11853583 11853617 6 147 0.5 0.5 0.5 4.0 183 chr3R 11853434 intron CG6959 - chr3R 11853526 intron CG6959 - chr3R 11853617 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-820 1201 chr3R 11853776 11853800 chr3R 11853880 11853905 6 105 1.5 2.0 1.8 2.1 129 chr3R 11853776 intron CG6959 - chr3R 11853840 intron CG6959 - chr3R 11853905 intron CG6959 - chr3R_6_11850001 chr3R_11850001 RAL-820 1202 chr3R 11920976 11921003 chr3R 11921072 11921100 10 96 0.5 1.5 1.0 5.0 124 chr3R 11920976 intron Cad87A - chr3R 11921038 intron Cad87A - chr3R 11921100 intron Cad87A - chr3R_10_11920001 chr3R_11920001 RAL-820 1203 chr3R 12022892 12022909 chr3R 12025069 12025086 pogo 5 2177 3.0 2.5 2.8 1.3 2194 chr3R 12022892 intergenic not near genes chr3R 12023989 intergenic not near genes chr3R 12025086 intergenic not near genes chr3R_5_12020001 chr3R_12020001 RAL-820 1204 chr3R 12029941 12029958 chr3R 12030027 12030045 5 87 0.5 2.0 1.2 2.3 104 chr3R 12029941 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12029993 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12030045 exon,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R_5_12025001 chr3R_12025001 RAL-820 1205 chr3R 12045180 12045195 chr3R 12045256 12045271 5 76 2.0 0.5 1.2 2.3 91 chr3R 12045180 intergenic not near genes chr3R 12045226 intergenic not near genes chr3R 12045271 intergenic not near genes chr3R_5_12045001 chr3R_12045001 RAL-820 1206 chr3R 12081997 12082028 chr3R 12082073 12082104 6 76 0.5 2.5 1.5 2.4 107 chr3R 12081997 intron CG14741 - chr3R 12082050 intron CG14741 - chr3R 12082104 intron CG14741 - chr3R_6_12080001 chr3R_12080001 RAL-820 1207 chr3R 12154030 12154064 chr3R 12154456 12154491 5 427 13.0 17.5 15.2 0.3 461 chr3R 12154030 intron dpr15 - chr3R 12154260 intron dpr15 - chr3R 12154491 intron dpr15 - chr3R_5_12150001 chr3R_12150001 RAL-820 1208 chr3R 12267855 12267888 chr3R 12267935 12267968 6 80 0.0 2.5 1.2 2.7 113 chr3R 12267855 intron svp + chr3R 12267912 intron svp + chr3R 12267968 intron svp + chr3R_6_12265001 chr3R_12265001 RAL-820 1209 chr3R 12344145 12344156 chr3R 12344222 12344232 4 77 0.0 2.0 1.0 2.0 87 chr3R 12344145 intergenic not near genes chr3R 12344188 intergenic not near genes chr3R 12344232 intergenic not near genes chr3R_4_12340001 chr3R_12340001 RAL-820 1210 chr3R 12392894 12392897 chr3R 12392990 12392997 4 99 3.5 5.5 4.5 0.7 103 chr3R 12392894 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392946 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392997 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_4_12390001 chr3R_12390001 RAL-820 1211 chr3R 12404994 12405014 chr3R 12405216 12405235 8 222 1.5 1.0 1.2 3.6 241 chr3R 12404994 intron Cyp9f2 - chr3R 12405114 intron Cyp9f2 - chr3R 12405235 intron Cyp9f2 - chr3R_8_12405001 chr3R_12405001 RAL-820 1212 chr3R 12568493 12568528 chr3R 12568573 12568604 18 79 2.5 5.0 3.8 3.8 111 chr3R 12568493 intron Octbeta2R - chr3R 12568548 intron Octbeta2R - chr3R 12568604 intron Octbeta2R - chr3R_18_12565001 chr3R_12565001 RAL-820 1213 chr3R 12566710 12566740 chr3R 12570804 12570835 12 4094 27.5 15.0 21.2 0.5 4125 chr3R 12566710 intron Octbeta2R - chr3R 12568772 intron Octbeta2R - chr3R 12570835 intron Octbeta2R - chr3R_12_12565001 chr3R_12565001 RAL-820 1214 chr3R 12786456 12786488 chr3R 12786814 12786846 4 358 2.0 1.5 1.8 1.4 390 chr3R 12786456 intergenic not near genes chr3R 12786651 intergenic not near genes chr3R 12786846 intergenic not near genes chr3R_4_12785001 chr3R_12785001 RAL-820 1215 chr3R 12920158 12920186 chr3R 12925361 12925389 copia 8 5203 1.0 3.0 2.0 2.7 5231 chr3R 12920158 intron beat-Vb + chr3R 12922774 intron beat-Vb + chr3R 12925389 intron beat-Vb + chr3R_8_12920001 chr3R_12920001 RAL-820 1216 chr3R 12954800 12954835 chr3R 12954905 12954940 8 100 3.5 3.5 3.5 1.8 140 chr3R 12954800 intron grsm - chr3R 12954870 intron grsm - chr3R 12954940 intron grsm - chr3R_8_12950001 chr3R_12950001 RAL-820 1217 chr3R 13073978 13074004 chr3R 13074057 13074083 7 79 5.0 2.5 3.8 1.5 105 chr3R 13073978 intron sim + chr3R 13074030 intron sim + chr3R 13074083 exon sim + chr3R_7_13070001 chr3R_13070001 RAL-820 1218 chr3R 13120774 13120800 chr3R 13120850 13120874 8 76 1.0 3.0 2.0 2.7 100 chr3R 13120774 intron timeout + chr3R 13120824 intron timeout + chr3R 13120874 intron timeout + chr3R_8_13120001 chr3R_13120001 RAL-820 1219 chr3R 13135831 13135849 chr3R 13138006 13138024 pogo 4 2175 1.0 1.5 1.2 1.8 2193 chr3R 13135831 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136928 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138024 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_4_13135001 chr3R_13135001 RAL-820 1220 chr3R 13143044 13143065 chr3R 13148621 13148642 mdg3 7 5577 1.0 5.0 3.0 1.8 5598 chr3R 13143044 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145843 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148642 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-820 1221 chr3R 13195951 13195982 chr3R 13196046 13196072 12 95 1.0 1.5 1.2 5.5 121 chr3R 13195951 intergenic not near genes chr3R 13196012 intergenic not near genes chr3R 13196072 intergenic not near genes chr3R_12_13195001 chr3R_13195001 RAL-820 1222 chr3R 13198324 13198343 chr3R 13198623 13198642 7 298 11.0 2.0 6.5 0.9 318 chr3R 13198324 intergenic not near genes chr3R 13198483 intergenic not near genes chr3R 13198642 intergenic not near genes chr3R_7_13195001 chr3R_13195001 RAL-820 1223 chr3R 13197943 13197970 chr3R 13198570 13198597 5 628 15.5 1.5 8.5 0.5 654 chr3R 13197943 intergenic not near genes chr3R 13198270 intergenic not near genes chr3R 13198597 intergenic not near genes chr3R_5_13195001 chr3R_13195001 RAL-820 1224 chr3R 13238268 13238289 chr3R 13238499 13238520 6 231 1.0 2.5 1.8 2.1 252 chr3R 13238268 intron Ace - chr3R 13238394 intron Ace - chr3R 13238520 intron Ace - chr3R_6_13235001 chr3R_13235001 RAL-820 1225 chr3R 13248650 13248680 chr3R 13248749 13248779 7 99 1.5 0.5 1.0 3.5 129 chr3R 13248650 intron Ace - chr3R 13248714 intron Ace - chr3R 13248779 intron Ace - chr3R_7_13245001 chr3R_13245001 RAL-820 1226 chr3R 13272065 13272080 chr3R 13272150 13272165 7 85 2.5 2.5 2.5 2.0 100 chr3R 13272065 intergenic CG8449 - chr3R 13272115 intergenic CG8449 - chr3R 13272165 intergenic CG8449 - chr3R_7_13270001 chr3R_13270001 RAL-820 1227 chr3R 13339060 13339084 chr3R 13339139 13339163 6 79 3.0 2.0 2.5 1.7 103 chr3R 13339060 intron PK2-R1 + chr3R 13339112 intron PK2-R1 + chr3R 13339163 intron PK2-R1 + chr3R_6_13335001 chr3R_13335001 RAL-820 1228 chr3R 13540492 13540519 chr3R 13540567 13540590 5 75 1.0 3.5 2.2 1.6 98 chr3R 13540492 intergenic not near genes chr3R 13540541 intergenic not near genes chr3R 13540590 intergenic not near genes chr3R_5_13540001 chr3R_13540001 RAL-820 1229 chr3R 13571376 13571387 chr3R 13571476 13571487 4 100 1.0 3.5 2.2 1.2 111 chr3R 13571376 intergenic not near genes chr3R 13571432 intergenic not near genes chr3R 13571487 intergenic not near genes chr3R_4_13570001 chr3R_13570001 RAL-820 1230 chr3R 13600783 13600810 chr3R 13600884 13600910 5 101 1.0 1.0 1.0 2.5 127 chr3R 13600783 intergenic not near genes chr3R 13600846 intergenic not near genes chr3R 13600910 intergenic not near genes chr3R_5_13600001 chr3R_13600001 RAL-820 1231 chr3R 13603060 13603074 chr3R 13603151 13603165 6 91 2.5 0.5 1.5 2.4 105 chr3R 13603060 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603165 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-820 1232 chr3R 13607179 13607205 chr3R 13607284 13607310 12 104 2.5 1.5 2.0 4.0 131 chr3R 13607179 3` UTR CG9759 - chr3R 13607244 3` UTR CG9759 - chr3R 13607310 3` UTR CG9759 - chr3R_12_13605001 chr3R_13605001 RAL-820 1233 chr3R 13669097 13669108 chr3R 13669193 13669204 7 96 5.0 2.5 3.8 1.5 107 chr3R 13669097 intron Task6 - chr3R 13669150 intron Task6 - chr3R 13669204 intron Task6 - chr3R_7_13665001 chr3R_13665001 RAL-820 1234 chr3R 13693028 13693028 chr3R 21907534 21907536 21 8214507 9.5 15.0 12.2 1.6 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_21_17800001 chr3R_17800001 RAL-820 1235 chr3R 14021658 14021678 chr3R 14023474 14023495 S-element 5 1817 1.5 2.0 1.8 1.8 1837 chr3R 14021658 intron rdx - chr3R 14022576 intron rdx - chr3R 14023495 intron rdx - chr3R_5_14020001 chr3R_14020001 RAL-820 1236 chr3R 14058136 14058149 chr3R 14058256 14058269 4 120 0.5 2.0 1.2 1.8 133 chr3R 14058136 intron foxo + chr3R 14058202 intron foxo + chr3R 14058269 intron foxo + chr3R_4_14055001 chr3R_14055001 RAL-820 1237 chr3R 14067144 14067156 chr3R 14067222 14067235 4 79 2.5 0.5 1.5 1.6 91 chr3R 14067144 exon foxo + chr3R 14067190 intron foxo + chr3R 14067235 intron foxo + chr3R_4_14065001 chr3R_14065001 RAL-820 1238 chr3R 14117444 14117472 chr3R 14117520 14117548 5 76 1.5 2.0 1.8 1.8 104 chr3R 14117444 intron Kif19A - chr3R 14117496 intron Kif19A - chr3R 14117548 intron Kif19A - chr3R_5_14115001 chr3R_14115001 RAL-820 1239 chr3R 14159259 14159290 chr3R 14159344 14159375 8 84 2.0 2.0 2.0 2.7 116 chr3R 14159259 exon CG31327 - chr3R 14159317 exon CG31327 - chr3R 14159375 exon CG31327 - chr3R_8_14155001 chr3R_14155001 RAL-820 1240 chr3R 14169868 14169880 chr3R 14169949 14169961 4 81 3.5 4.5 4.0 0.8 93 chr3R 14169868 3` UTR Dop1R1 - chr3R 14169914 3` UTR Dop1R1 - chr3R 14169961 3` UTR Dop1R1 - chr3R_4_14165001 chr3R_14165001 RAL-820 1241 chr3R 14180818 14180835 chr3R 14185583 14185600 F-element 5 4765 1.0 0.0 0.5 3.3 4782 chr3R 14180818 intron Dop1R1 - chr3R 14183209 intron Dop1R1 - chr3R 14185600 intron Dop1R1 - chr3R_5_14180001 chr3R_14180001 RAL-820 1242 chr3R 14194434 14194460 chr3R 14203583 14203609 roo 4 9149 3.0 2.5 2.8 1.1 9175 chr3R 14194434 intron Dop1R1 - chr3R 14199022 intron Dop1R1 - chr3R 14203609 intron Dop1R1 - chr3R_4_14195001 chr3R_14195001 RAL-820 1243 chr3R 14246398 14246416 chr3R 14247894 14247912 jockey 5 1494 3.5 2.5 3.0 1.2 1514 chr3R 14246398 intergenic not near genes chr3R 14247155 intergenic not near genes chr3R 14247912 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-820 1244 chr3R 14280824 14280839 chr3R 14280903 14280918 4 79 2.5 2.5 2.5 1.1 94 chr3R 14280824 intron trx - chr3R 14280871 intron trx - chr3R 14280918 intron trx - chr3R_4_14280001 chr3R_14280001 RAL-820 1245 chr3R 14363740 14363756 chr3R 14363822 14363838 5 81 0.0 3.0 1.5 2.0 98 chr3R 14363740 intron NK7.1 - chr3R 14363789 intron NK7.1 - chr3R 14363838 intron NK7.1 - chr3R_5_14360001 chr3R_14360001 RAL-820 1246 chr3R 14366209 14366231 chr3R 14366285 14366309 8 78 4.0 5.5 4.8 1.4 100 chr3R 14366209 intron NK7.1 - chr3R 14366259 intron NK7.1 - chr3R 14366309 intron NK7.1 - chr3R_8_14365001 chr3R_14365001 RAL-820 1247 chr3R 14608800 14608830 chr3R 14608875 14608906 8 76 2.5 2.5 2.5 2.3 106 chr3R 14608800 intergenic not near genes chr3R 14608853 intergenic not near genes chr3R 14608906 intergenic not near genes chr3R_8_14605001 chr3R_14605001 RAL-820 1248 chr3R 14704384 14704417 chr3R 14704461 14704494 7 77 1.5 3.0 2.2 2.2 110 chr3R 14704384 intron kibra - chr3R 14704439 intron kibra - chr3R 14704494 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-820 1249 chr3R 14785405 14785433 chr3R 14785492 14785520 7 87 1.5 1.5 1.5 2.8 115 chr3R 14785405 intron jvl + chr3R 14785462 intron jvl + chr3R 14785520 intron jvl + chr3R_7_14785001 chr3R_14785001 RAL-820 1250 chr3R 14947927 14947959 chr3R 14948153 14948189 9 227 2.5 2.5 2.5 2.6 262 chr3R 14947927 intergenic not near genes chr3R 14948058 intergenic not near genes chr3R 14948189 intergenic not near genes chr3R_9_14945001 chr3R_14945001 RAL-820 1251 chr3R 14994589 14994616 chr3R 14994678 14994700 8 88 2.5 2.5 2.5 2.3 111 chr3R 14994589 intergenic not near genes chr3R 14994644 intergenic not near genes chr3R 14994700 intergenic not near genes chr3R_8_14990001 chr3R_14990001 RAL-820 1252 chr3R 15079809 15079814 chr3R 15080050 15080055 pogo 4 241 5.0 0.5 2.8 1.1 246 chr3R 15079809 3` UTR CG6966 - chr3R 15079932 3` UTR CG6966 - chr3R 15080055 3` UTR CG6966 - chr3R_4_15075001 chr3R_15075001 RAL-820 1253 chr3R 15102496 15102529 chr3R 15109751 15109784 412 5 7255 2.5 2.0 2.2 1.6 7288 chr3R 15102496 intron CG42788 - chr3R 15106140 intron CG42788 - chr3R 15109784 intron CG42788 - chr3R_5_15105001 chr3R_15105001 RAL-820 1254 chr3R 15127796 15127811 chr3R 15127876 15127891 5 80 0.0 0.5 0.2 4.2 95 chr3R 15127796 intron CG42788 - chr3R 15127844 intron CG42788 - chr3R 15127891 intron CG42788 - chr3R_5_15125001 chr3R_15125001 RAL-820 1255 chr3R 15132060 15132073 chr3R 15135119 15135133 Juan 6 3060 5.0 3.5 4.2 1.2 3073 chr3R 15132060 intergenic CG42788 - chr3R 15133596 intergenic not near genes chr3R 15135133 intergenic CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-820 1256 chr3R 15167804 15167835 chr3R 15167961 15167968 5 152 5.0 2.0 3.5 1.1 164 chr3R 15167804 intron Gyc88E + chr3R 15167886 intron Gyc88E + chr3R 15167968 intron Gyc88E + chr3R_5_15165001 chr3R_15165001 RAL-820 1257 chr3R 15406142 15406171 chr3R 15406215 15406252 6 80 1.0 0.0 0.5 4.0 110 chr3R 15406142 intron CG6125 - chr3R 15406197 intron CG6125 - chr3R 15406252 intron CG6125 - chr3R_6_15405001 chr3R_15405001 RAL-820 1258 chr3R 15507498 15507518 chr3R 15507585 15507605 4 87 0.5 0.0 0.2 3.3 107 chr3R 15507498 intergenic CG44014 - chr3R 15507552 intergenic CG44014 - chr3R 15507605 intergenic CG44014 - chr3R_4_15505001 chr3R_15505001 RAL-820 1259 chr3R 15517600 15517624 chr3R 15517683 15517707 6 81 1.5 0.0 0.8 3.3 107 chr3R 15517600 intergenic not near genes chr3R 15517654 intergenic not near genes chr3R 15517707 intergenic not near genes chr3R_6_15515001 chr3R_15515001 RAL-820 1260 chr3R 15601165 15601192 chr3R 15608687 15608712 412 6 7518 3.5 2.0 2.8 1.6 7547 chr3R 15601165 intergenic not near genes chr3R 15604938 intergenic not near genes chr3R 15608712 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-820 1261 chr3R 15611929 15611946 chr3R 15612016 15612033 4 87 0.5 5.0 2.8 1.1 104 chr3R 15611929 intergenic not near genes chr3R 15611981 intergenic not near genes chr3R 15612033 intergenic not near genes chr3R_4_15610001 chr3R_15610001 RAL-820 1262 chr3R 15618748 15618750 chr3R 15626221 15626224 blood 4 7473 1.0 4.0 2.5 1.1 7476 chr3R 15618748 intergenic not near genes chr3R 15622486 intergenic not near genes chr3R 15626224 intergenic not near genes chr3R_4_15620001 chr3R_15620001 RAL-820 1263 chr3R 15702873 15702891 chr3R 15703062 15703078 4 189 0.0 2.0 1.0 2.0 205 chr3R 15702873 intergenic not near genes chr3R 15702976 intergenic not near genes chr3R 15703078 intergenic not near genes chr3R_4_15700001 chr3R_15700001 RAL-820 1264 chr3R 15868955 15868959 chr3R 15869035 15869039 4 80 2.0 0.0 1.0 2.0 84 chr3R 15868955 intron CG31183 - chr3R 15868997 intron CG31183 - chr3R 15869039 intron CG31183 - chr3R_4_15865001 chr3R_15865001 RAL-820 1265 chr3R 15892657 15892689 chr3R 15892737 15892768 4 80 3.5 3.0 3.2 1.0 111 chr3R 15892657 intron CG14877 - chr3R 15892712 intron CG14877 - chr3R 15892768 intron CG14877 - chr3R_4_15890001 chr3R_15890001 RAL-820 1266 chr3R 16225099 16225114 chr3R 16225184 16225199 4 84 2.5 1.5 2.0 1.3 100 chr3R 16225099 intergenic not near genes chr3R 16225149 intergenic not near genes chr3R 16225199 intergenic tara + chr3R_4_16225001 chr3R_16225001 RAL-820 1267 chr3R 16246522 16246554 chr3R 16246598 16246630 4 76 0.0 1.0 0.5 2.7 108 chr3R 16246522 intron tara + chr3R 16246576 intron tara + chr3R 16246630 intron tara + chr3R_4_16245001 chr3R_16245001 RAL-820 1268 chr3R 16471223 16471251 chr3R 16471320 16471349 8 98 3.0 0.5 1.8 2.9 126 chr3R 16471223 exon CSN5 + chr3R 16471286 3` UTR CSN5 + chr3R 16471349 3` UTR CSN5 + chr3R_8_16470001 chr3R_16470001 RAL-820 1269 chr3R 16538243 16538260 chr3R 16538791 16538807 7 548 2.0 3.0 2.5 2.0 564 chr3R 16538243 intron CG42342 + chr3R 16538525 intron CG42342 + chr3R 16538807 intron CG42342 + chr3R_7_16535001 chr3R_16535001 RAL-820 1270 chr3R 16538273 16538276 chr3R 16538788 16538824 4 540 1.5 2.5 2.0 1.3 551 chr3R 16538273 intron CG42342 + chr3R 16538548 intron CG42342 + chr3R 16538824 intron CG42342 + chr3R_4_16535001 chr3R_16535001 RAL-820 1271 chr3R 16555330 16555364 chr3R 16555423 16555457 7 93 1.0 2.0 1.5 2.8 127 chr3R 16555330 intron CG42342 + chr3R 16555394 intron CG42342 + chr3R 16555457 intron CG42342 + chr3R_7_16555001 chr3R_16555001 RAL-820 1272 chr3R 16582911 16582919 chr3R 16582990 16582998 6 79 2.5 5.0 3.8 1.2 87 chr3R 16582911 intron Scp2 - chr3R 16582954 intron Scp2 - chr3R 16582998 intron Scp2 - chr3R_6_16580001 chr3R_16580001 RAL-820 1273 chr3R 16756331 16756347 chr3R 16762515 16762538 diver 6 6190 1.5 1.0 1.2 2.7 6207 chr3R 16756331 intron bxd - chr3R 16759434 intron bxd - chr3R 16762538 intron bxd - chr3R_6_16755001 chr3R_16755001 RAL-820 1274 chr3R 17012961 17012979 chr3R 17013037 17013053 5 76 3.0 6.0 4.5 0.9 92 chr3R 17012961 intergenic CG8907 + chr3R 17013007 intergenic CG8907 + chr3R 17013053 intergenic not near genes chr3R_5_17010001 chr3R_17010001 RAL-820 1275 chr3R 17060828 17060850 chr3R 17060905 17060919 9 78 4.5 3.0 3.8 1.9 91 chr3R 17060828 intron Dad + chr3R 17060874 intron Dad + chr3R 17060919 intron Dad + chr3R_9_17060001 chr3R_17060001 RAL-820 1276 chr3R 17067511 17067534 chr3R 17067593 17067604 5 80 5.0 2.0 3.5 1.1 93 chr3R 17067511 intron Dad + chr3R 17067558 intron Dad + chr3R 17067604 intron Dad + chr3R_5_17065001 chr3R_17065001 RAL-820 1277 chr3R 17121522 17121554 chr3R 17121717 17121748 5 194 0.5 0.0 0.2 4.2 226 chr3R 17121522 intron cher - chr3R 17121635 intron,exon cher -,CG42779 + chr3R 17121748 intron,exon cher -,CG42779 + chr3R_5_17120001 chr3R_17120001 RAL-820 1278 chr3R 17132050 17132081 chr3R 17132129 17132161 5 80 1.5 3.0 2.2 1.6 111 chr3R 17132050 exon CG4053 - chr3R 17132106 exon CG4053 - chr3R 17132161 5` UTR CG4053 - chr3R_5_17130001 chr3R_17130001 RAL-820 1279 chr3R 17335161 17335187 chr3R 17335237 17335263 5 76 2.0 3.5 2.8 1.3 102 chr3R 17335161 intron beat-IIa - chr3R 17335212 intron beat-IIa - chr3R 17335263 intron beat-IIa - chr3R_5_17335001 chr3R_17335001 RAL-820 1280 chr3R 17346693 17346717 chr3R 17348256 17348280 F-element 6 1563 0.5 3.0 1.8 2.1 1587 chr3R 17346693 intron beat-IIa - chr3R 17347486 intron beat-IIa - chr3R 17348280 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-820 1281 chr3R 17407008 17407030 chr3R 17407110 17407131 5 102 1.5 3.5 2.5 1.4 123 chr3R 17407008 intron CG42798 + chr3R 17407070 5` UTR CG42798 + chr3R 17407131 exon CG42798 + chr3R_5_17405001 chr3R_17405001 RAL-820 1282 chr3R 17497964 17497991 chr3R 17498050 17498077 4 86 0.5 2.0 1.2 1.8 113 chr3R 17497964 intron Dscam3 - chr3R 17498020 intron Dscam3 - chr3R 17498077 intron Dscam3 - chr3R_4_17495001 chr3R_17495001 RAL-820 1283 chr3R 17498850 17498878 chr3R 17498992 17499020 12 142 1.5 5.0 3.2 2.9 170 chr3R 17498850 intron Dscam3 - chr3R 17498935 intron Dscam3 - chr3R 17499020 intron Dscam3 - chr3R_12_17495001 chr3R_17495001 RAL-820 1284 chr3R 17591284 17591321 chr3R 17591720 17591753 F-element 4 434 3.0 3.0 3.0 1.0 469 chr3R 17591284 intergenic not near genes chr3R 17591518 intergenic not near genes chr3R 17591753 intergenic not near genes chr3R_4_17590001 chr3R_17590001 RAL-820 1285 chr3R 17638317 17638340 chr3R 17638803 17638826 roo 6 486 3.0 0.5 1.8 2.1 509 chr3R 17638317 intron CG43175 + chr3R 17638572 intron CG43175 + chr3R 17638826 intron,intron CG43175 +,CR45222 + chr3R_6_17635001 chr3R_17635001 RAL-820 1286 chr3R 17714671 17714700 chr3R 17714751 17714780 7 77 1.5 3.5 2.5 2.0 109 chr3R 17714671 intron osa - chr3R 17714726 intron osa - chr3R 17714780 intron osa - chr3R_7_17710001 chr3R_17710001 RAL-820 1287 chr3R 17739184 17739212 chr3R 17739266 17739294 5 82 4.5 2.5 3.5 1.1 110 chr3R 17739184 intron TyrRII + chr3R 17739239 intron TyrRII + chr3R 17739294 intron TyrRII + chr3R_5_17735001 chr3R_17735001 RAL-820 1288 chr3R 17814772 17814793 chr3R 17814857 17814878 8 84 4.5 2.5 3.5 1.8 106 chr3R 17814772 intron tinc + chr3R 17814825 intron tinc + chr3R 17814878 intron tinc + chr3R_8_17810001 chr3R_17810001 RAL-820 1289 chr3R 17845210 17845214 chr3R 17845287 17845291 4 77 1.5 5.0 3.2 1.0 81 chr3R 17845210 intron tinc + chr3R 17845250 intron tinc + chr3R 17845291 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-820 1290 chr3R 17886885 17886916 chr3R 17886963 17886991 9 78 2.0 1.5 1.8 3.2 106 chr3R 17886885 intron Rim - chr3R 17886938 intron Rim - chr3R 17886991 intron Rim - chr3R_9_17885001 chr3R_17885001 RAL-820 1291 chr3R 17925852 17925882 chr3R 17927319 17927348 hobo 8 1466 4.5 6.0 5.2 1.3 1496 chr3R 17925852 intron cpo + chr3R 17926600 intron cpo + chr3R 17927348 intron cpo + chr3R_8_17925001 chr3R_17925001 RAL-820 1292 chr3R 17976523 17976532 chr3R 17976600 17976609 5 77 3.5 2.5 3.0 1.2 86 chr3R 17976523 intron cpo + chr3R 17976566 intron cpo + chr3R 17976609 intron cpo + chr3R_5_17975001 chr3R_17975001 RAL-820 1293 chr3R 17977888 17977909 chr3R 17978009 17978031 6 122 0.0 0.5 0.2 5.0 143 chr3R 17977888 intron cpo + chr3R 17977960 intron cpo + chr3R 17978031 intron cpo + chr3R_6_17975001 chr3R_17975001 RAL-820 1294 chr3R 18041755 18041762 chr3R 18041832 18041839 4 77 0.0 0.0 0.0 4.0 84 chr3R 18041755 intergenic not near genes chr3R 18041797 intergenic not near genes chr3R 18041839 intergenic not near genes chr3R_4_18040001 chr3R_18040001 RAL-820 1295 chr3R 18054478 18054498 chr3R 18054553 18054573 6 76 1.5 2.5 2.0 2.0 95 chr3R 18054478 intergenic not near genes chr3R 18054526 intergenic not near genes chr3R 18054573 intergenic not near genes chr3R_6_18050001 chr3R_18050001 RAL-820 1296 chr3R 18098276 18098284 chr3R 18098353 18098361 4 77 1.0 1.0 1.0 2.0 85 chr3R 18098276 intron sr + chr3R 18098318 intron sr + chr3R 18098361 intron sr + chr3R_4_18095001 chr3R_18095001 RAL-820 1297 chr3R 18235221 18235245 chr3R 18235387 18235421 7 174 3.0 2.0 2.5 2.0 200 chr3R 18235221 intergenic not near genes chr3R 18235321 intergenic not near genes chr3R 18235421 intergenic not near genes chr3R_7_18235001 chr3R_18235001 RAL-820 1298 chr3R 18376189 18376213 chr3R 18376299 18376323 5 110 1.5 1.5 1.5 2.0 134 chr3R 18376189 5` UTR CR44946 + chr3R 18376256 5` UTR CR44946 + chr3R 18376323 5` UTR CR44946 + chr3R_5_18375001 chr3R_18375001 RAL-820 1299 chr3R 18563198 18563215 chr3R 18563495 18563512 4 297 2.0 2.0 2.0 1.3 314 chr3R 18563198 intergenic not near genes chr3R 18563355 intergenic not near genes chr3R 18563512 intergenic not near genes chr3R_4_18560001 chr3R_18560001 RAL-820 1300 chr3R 18575571 18575600 chr3R 18575655 18575684 10 83 0.5 2.5 1.5 4.0 113 chr3R 18575571 intron,intron CG7694 +,fray + chr3R 18575628 intron,intron CG7694 +,fray + chr3R 18575684 intron,intron CG7694 +,fray + chr3R_10_18575001 chr3R_18575001 RAL-820 1301 chr3R 18606505 18606524 chr3R 18610737 18610756 F-element 5 4232 2.0 1.5 1.8 1.8 4251 chr3R 18606505 intron,intron qin +,CG14304 - chr3R 18608630 intron,intron qin +,CG14304 - chr3R 18610756 intron,intron qin +,CG14304 - chr3R_5_18605001 chr3R_18605001 RAL-820 1302 chr3R 18622776 18622805 chr3R 18622852 18622881 13 76 0.5 0.5 0.5 8.7 105 chr3R 18622776 intron qin + chr3R 18622828 intron qin + chr3R 18622881 intron qin + chr3R_13_18620001 chr3R_18620001 RAL-820 1303 chr3R 18730026 18730037 chr3R 18730102 18730113 5 75 2.0 1.5 1.8 1.8 87 chr3R 18730026 intron Cha + chr3R 18730070 intron Cha + chr3R 18730113 exon Cha + chr3R_5_18730001 chr3R_18730001 RAL-820 1304 chr3R 18766790 18766808 chr3R 18766854 18766886 6 75 3.0 2.5 2.8 1.6 96 chr3R 18766790 intron CG7720 - chr3R 18766838 intron CG7720 - chr3R 18766886 intron CG7720 - chr3R_6_18765001 chr3R_18765001 RAL-820 1305 chr3R 18781695 18781726 chr3R 18781770 18781802 10 74 1.0 2.5 1.8 3.6 107 chr3R 18781695 intron CG7720 - chr3R 18781748 intron CG7720 - chr3R 18781802 intron CG7720 - chr3R_10_18780001 chr3R_18780001 RAL-820 1306 chr3R 18812081 18812108 chr3R 18812158 18812186 10 78 1.0 3.5 2.2 3.1 105 chr3R 18812081 intron CG18208 - chr3R 18812134 intron CG18208 - chr3R 18812186 intron CG18208 - chr3R_10_18810001 chr3R_18810001 RAL-820 1307 chr3R 18817522 18817536 chr3R 18817620 18817634 5 98 0.5 0.5 0.5 3.3 112 chr3R 18817522 intron CG18208 - chr3R 18817578 intron CG18208 - chr3R 18817634 intron CG18208 - chr3R_5_18815001 chr3R_18815001 RAL-820 1308 chr3R 18839816 18839838 chr3R 18839900 18839921 4 83 1.0 3.0 2.0 1.3 105 chr3R 18839816 intron CG18208 - chr3R 18839868 intron CG18208 - chr3R 18839921 intron CG18208 - chr3R_4_18835001 chr3R_18835001 RAL-820 1309 chr3R 18967131 18967164 chr3R 18967322 18967355 6 191 21.0 21.5 21.2 0.3 224 chr3R 18967131 intron,intron CG42613 +,CG43732 + chr3R 18967243 intron,intron CG42613 +,CG43732 + chr3R 18967355 intron,intron CG42613 +,CG43732 + chr3R_6_18965001 chr3R_18965001 RAL-820 1310 chr3R 19013022 19013052 chr3R 19013106 19013136 6 84 1.5 2.0 1.8 2.1 114 chr3R 19013022 intron gukh + chr3R 19013079 intron gukh + chr3R 19013136 intron gukh + chr3R_6_19010001 chr3R_19010001 RAL-820 1311 chr3R 19033931 19033959 chr3R 19034009 19034037 11 76 5.0 7.0 6.0 1.6 106 chr3R 19033931 intron CG6026 + chr3R 19033984 intron CG6026 + chr3R 19034037 intron CG6026 + chr3R_11_19030001 chr3R_19030001 RAL-820 1312 chr3R 19081979 19081986 chr3R 19082057 19082062 4 78 2.0 3.5 2.8 1.1 83 chr3R 19081979 intron cdi - chr3R 19082020 intron cdi - chr3R 19082062 intron cdi - chr3R_4_19080001 chr3R_19080001 RAL-820 1313 chr3R 19106820 19106849 chr3R 19106910 19106920 6 87 5.5 0.0 2.8 1.6 100 chr3R 19106820 intron CG6040 + chr3R 19106870 intron CG6040 + chr3R 19106920 intron CG6040 + chr3R_6_19105001 chr3R_19105001 RAL-820 1314 chr3R 19170923 19170937 chr3R 19171005 19171019 6 82 3.5 0.0 1.8 2.1 96 chr3R 19170923 intergenic sqz + chr3R 19170971 intergenic sqz + chr3R 19171019 intergenic sqz + chr3R_6_19170001 chr3R_19170001 RAL-820 1315 chr3R 19229379 19229403 chr3R 19229455 19229479 8 76 1.0 5.5 3.2 1.9 100 chr3R 19229379 intergenic CG3773 +,CG5250 - chr3R 19229429 intergenic CG3773 +,CG5250 - chr3R 19229479 5` UTR CG3773 + chr3R_8_19225001 chr3R_19225001 RAL-820 1316 chr3R 19290551 19290579 chr3R 19290627 19290649 9 75 0.5 2.0 1.2 4.1 98 chr3R 19290551 intergenic not near genes chr3R 19290600 intergenic not near genes chr3R 19290649 intergenic not near genes chr3R_9_19290001 chr3R_19290001 RAL-820 1317 chr3R 19344667 19344699 chr3R 19344802 19344834 4 135 2.5 0.5 1.5 1.6 167 chr3R 19344667 intergenic not near genes chr3R 19344750 intergenic not near genes chr3R 19344834 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-820 1318 chr3R 19418416 19418440 chr3R 19418508 19418531 9 92 2.0 1.5 1.8 3.2 115 chr3R 19418416 intron CG31221 + chr3R 19418474 intron CG31221 + chr3R 19418531 intron CG31221 + chr3R_9_19415001 chr3R_19415001 RAL-820 1319 chr3R 19435521 19435545 chr3R 19435797 19435821 7 276 0.5 7.0 3.8 1.5 300 chr3R 19435521 intron CG31221 + chr3R 19435671 intron CG31221 + chr3R 19435821 intron CG31221 + chr3R_7_19435001 chr3R_19435001 RAL-820 1320 chr3R 19453855 19453872 chr3R 19454004 19454022 5 150 1.0 2.5 1.8 1.8 167 chr3R 19453855 intron CG31221 + chr3R 19453938 intron CG31221 + chr3R 19454022 intron CG31221 + chr3R_5_19450001 chr3R_19450001 RAL-820 1321 chr3R 19502206 19502228 chr3R 19502283 19502305 5 77 2.0 3.5 2.8 1.3 99 chr3R 19502206 intron Dys + chr3R 19502256 intron Dys + chr3R 19502305 intron Dys + chr3R_5_19500001 chr3R_19500001 RAL-820 1322 chr3R 19550067 19550092 chr3R 19550174 19550201 6 108 4.0 3.0 3.5 1.3 134 chr3R 19550067 intron Dys + chr3R 19550134 intron Dys + chr3R 19550201 intron Dys + chr3R_6_19550001 chr3R_19550001 RAL-820 1323 chr3R 19702323 19702354 chr3R 19702405 19702436 8 81 0.5 2.5 1.5 3.2 113 chr3R 19702323 intergenic not near genes chr3R 19702380 intergenic not near genes chr3R 19702436 intergenic not near genes chr3R_8_19700001 chr3R_19700001 RAL-820 1324 chr3R 19716223 19716249 chr3R 19716300 19716326 6 77 0.0 0.0 0.0 6.0 103 chr3R 19716223 intergenic CG34286 - chr3R 19716274 intergenic CG34286 - chr3R 19716326 intergenic CG34286 - chr3R_6_19715001 chr3R_19715001 RAL-820 1325 chr3R 19824503 19824532 chr3R 19824597 19824626 5 94 2.5 3.0 2.8 1.3 123 chr3R 19824503 intron bnl - chr3R 19824564 intron bnl - chr3R 19824626 intron bnl - chr3R_5_19820001 chr3R_19820001 RAL-820 1326 chr3R 19908282 19908289 chr3R 19908366 19908373 4 84 0.0 3.5 1.8 1.4 91 chr3R 19908282 intron RhoGAP92B + chr3R 19908328 intron RhoGAP92B + chr3R 19908373 intron RhoGAP92B + chr3R_4_19905001 chr3R_19905001 RAL-820 1327 chr3R 19943894 19943897 chr3R 19943974 19943977 4 80 4.5 1.0 2.8 1.1 83 chr3R 19943894 intron Hs6st - chr3R 19943936 intron Hs6st - chr3R 19943977 intron Hs6st - chr3R_4_19940001 chr3R_19940001 RAL-820 1328 chr3R 19950031 19950065 chr3R 19950109 19950143 10 78 1.5 1.5 1.5 4.0 112 chr3R 19950031 intron Hs6st - chr3R 19950087 intron Hs6st - chr3R 19950143 intron Hs6st - chr3R_10_19950001 chr3R_19950001 RAL-820 1329 chr3R 20008823 20008848 chr3R 20008904 20008929 7 80 0.0 2.0 1.0 3.5 106 chr3R 20008823 intergenic MED25 +,Hs6st - chr3R 20008876 intergenic MED25 +,Hs6st - chr3R 20008929 intergenic MED25 +,Hs6st - chr3R_7_20005001 chr3R_20005001 RAL-820 1330 chr3R 20077043 20077065 chr3R 20077129 20077148 4 85 1.0 2.5 1.8 1.4 105 chr3R 20077043 intergenic not near genes chr3R 20077096 intergenic not near genes chr3R 20077148 intergenic not near genes chr3R_4_20075001 chr3R_20075001 RAL-820 1331 chr3R 20109541 20109570 chr3R 20114747 20114776 copia 5 5206 1.0 1.0 1.0 2.5 5235 chr3R 20109541 intergenic not near genes chr3R 20112158 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-820 1332 chr3R 20124567 20124593 chr3R 20124654 20124680 4 87 2.0 3.5 2.8 1.1 113 chr3R 20124567 intergenic not near genes chr3R 20124624 intergenic not near genes chr3R 20124680 intergenic not near genes chr3R_4_20120001 chr3R_20120001 RAL-820 1333 chr3R 20137191 20137217 chr3R 20137317 20137344 4 126 2.5 0.5 1.5 1.6 153 chr3R 20137191 intergenic not near genes chr3R 20137268 intergenic not near genes chr3R 20137344 intergenic not near genes chr3R_4_20135001 chr3R_20135001 RAL-820 1334 chr3R 20149602 20149621 chr3R 20151722 20151741 6 2120 10.5 15.0 12.8 0.4 2139 chr3R 20149602 intergenic not near genes chr3R 20150672 intergenic not near genes chr3R 20151741 intergenic not near genes chr3R_6_20150001 chr3R_20150001 RAL-820 1335 chr3R 20195709 20195718 chr3R 20195785 20195793 5 75 1.5 6.0 3.8 1.0 84 chr3R 20195709 intergenic not near genes chr3R 20195751 intergenic not near genes chr3R 20195793 intergenic not near genes chr3R_5_20195001 chr3R_20195001 RAL-820 1336 chr3R 20245278 20245304 chr3R 20248888 20248914 F-element 5 3610 0.5 1.0 0.8 2.8 3636 chr3R 20245278 3` UTR Nlg4 + chr3R 20247096 intergenic not near genes chr3R 20248914 intergenic not near genes chr3R_5_20245001 chr3R_20245001 RAL-820 1337 chr3R 20266514 20266548 chr3R 20272985 20273019 Burdock 5 6471 3.5 2.5 3.0 1.2 6505 chr3R 20266514 intron cic + chr3R 20269766 intron cic + chr3R 20273019 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-820 1338 chr3R 20282276 20282308 chr3R 20282351 20282384 5 76 0.0 3.5 1.8 1.8 108 chr3R 20282276 intron cic + chr3R 20282330 intron cic + chr3R 20282384 intron cic + chr3R_5_20280001 chr3R_20280001 RAL-820 1339 chr3R 20433102 20433131 chr3R 20433191 20433221 7 90 2.0 1.5 1.8 2.5 119 chr3R 20433102 intron Gfrl - chr3R 20433162 intron Gfrl - chr3R 20433221 intron Gfrl - chr3R_7_20430001 chr3R_20430001 RAL-820 1340 chr3R 20516543 20516556 chr3R 20516899 20516912 7 355 5.0 3.0 4.0 1.4 369 chr3R 20516543 intergenic not near genes chr3R 20516728 intergenic not near genes chr3R 20516912 intergenic not near genes chr3R_7_20515001 chr3R_20515001 RAL-820 1341 chr3R 20595604 20595626 chr3R 20595814 20595835 5 209 3.0 2.0 2.5 1.4 231 chr3R 20595604 intron bon + chr3R 20595720 intron bon + chr3R 20595835 intron bon + chr3R_5_20595001 chr3R_20595001 RAL-820 1342 chr3R 20722851 20722879 chr3R 20722978 20723006 5 127 2.5 1.0 1.8 1.8 155 chr3R 20722851 intergenic not near genes chr3R 20722928 intergenic not near genes chr3R 20723006 intergenic not near genes chr3R_5_20720001 chr3R_20720001 RAL-820 1343 chr3R 20730931 20731061 chr3R 20731031 20731149 6 96 0.0 0.0 0.0 6.0 218 chr3R 20730931 intergenic not near genes chr3R 20731040 intergenic not near genes chr3R 20731149 intergenic CG31205 + chr3R_6_20730001 chr3R_20730001 RAL-820 1344 chr3R 20735006 20735048 chr3R 20735092 20735128 6 84 3.5 1.5 2.5 1.7 122 chr3R 20735006 intergenic not near genes chr3R 20735067 intergenic not near genes chr3R 20735128 intergenic cdc2c + chr3R_6_20735001 chr3R_20735001 RAL-820 1345 chr3R 20771707 20771728 chr3R 20771788 20771796 6 78 0.0 1.5 0.8 3.3 89 chr3R 20771707 intron,intron Syp +,Takl1 - chr3R 20771752 intron,intron Syp +,Takl1 - chr3R 20771796 intron,exon Syp +,Takl1 - chr3R_6_20770001 chr3R_20770001 RAL-820 1346 chr3R 20787441 20787456 chr3R 20787528 20787547 7 90 2.0 1.5 1.8 2.5 106 chr3R 20787441 intron Syp + chr3R 20787494 intron Syp + chr3R 20787547 intron Syp + chr3R_7_20785001 chr3R_20785001 RAL-820 1347 chr3R 20824828 20824847 chr3R 20824904 20824923 6 76 4.5 2.5 3.5 1.3 95 chr3R 20824828 3` UTR AdSS - chr3R 20824876 3` UTR AdSS - chr3R 20824923 3` UTR AdSS - chr3R_6_20820001 chr3R_20820001 RAL-820 1348 chr3R 20850087 20850105 chr3R 20850172 20850190 5 85 1.5 1.0 1.2 2.3 103 chr3R 20850087 intergenic RpS30 + chr3R 20850138 intergenic RpS30 + chr3R 20850190 intergenic RpS30 + chr3R_5_20850001 chr3R_20850001 RAL-820 1349 chr3R 20874518 20874543 chr3R 20874603 20874628 9 85 1.0 0.5 0.8 5.0 110 chr3R 20874518 3` UTR TotB + chr3R 20874573 intergenic TotB + chr3R 20874628 intergenic TotB + chr3R_9_20870001 chr3R_20870001 RAL-820 1350 chr3R 20901345 20901353 chr3R 20901428 20901439 4 84 3.0 3.0 3.0 1.0 94 chr3R 20901345 intergenic not near genes chr3R 20901392 intergenic not near genes chr3R 20901439 intergenic not near genes chr3R_4_20900001 chr3R_20900001 RAL-820 1351 chr3R 21014030 21014043 chr3R 21014108 21014121 4 78 1.5 3.5 2.5 1.1 91 chr3R 21014030 3` UTR Calx + chr3R 21014076 3` UTR Calx + chr3R 21014121 3` UTR Calx + chr3R_4_21010001 chr3R_21010001 RAL-820 1352 chr3R 21239806 21239947 chr3R 21239900 21240023 5 79 0.0 0.0 0.0 5.0 217 chr3R 21239806 intergenic not near genes chr3R 21239914 intergenic not near genes chr3R 21240023 intergenic not near genes chr3R_5_21235001 chr3R_21235001 RAL-820 1353 chr3R 21242512 21242537 chr3R 21245350 21245375 6 2838 17.0 13.0 15.0 0.4 2863 chr3R 21242512 intergenic CG5892 + chr3R 21243944 intron CG5892 + chr3R 21245375 3` UTR CG5892 + chr3R_6_21240001 chr3R_21240001 RAL-820 1354 chr3R 21322973 21323000 chr3R 21323052 21323078 8 78 3.5 0.5 2.0 2.7 105 chr3R 21322973 intron CG16791 - chr3R 21323026 intron CG16791 - chr3R 21323078 intron CG16791 - chr3R_8_21320001 chr3R_21320001 RAL-820 1355 chr3R 21330799 21330832 chr3R 21330889 21330922 14 90 1.0 1.0 1.0 7.0 123 chr3R 21330799 intron CG16791 - chr3R 21330860 intron CG16791 - chr3R 21330922 intron CG16791 - chr3R_14_21330001 chr3R_21330001 RAL-820 1356 chr3R 21383279 21383295 chr3R 21383358 21383374 5 79 0.0 1.0 0.5 3.3 95 chr3R 21383279 intergenic not near genes chr3R 21383326 intergenic not near genes chr3R 21383374 intergenic not near genes chr3R_5_21380001 chr3R_21380001 RAL-820 1357 chr3R 21415838 21415872 chr3R 21416046 21416079 5 208 0.5 2.0 1.2 2.3 241 chr3R 21415838 intron lbl - chr3R 21415958 intron lbl - chr3R 21416079 intron lbl - chr3R_5_21415001 chr3R_21415001 RAL-820 1358 chr3R 21472012 21472033 chr3R 21472093 21472114 9 81 2.5 2.5 2.5 2.6 102 chr3R 21472012 intergenic not near genes chr3R 21472063 intergenic not near genes chr3R 21472114 intergenic not near genes chr3R_9_21470001 chr3R_21470001 RAL-820 1359 chr3R 21494681 21494714 chr3R 21494761 21494794 7 80 1.5 1.0 1.2 3.2 113 chr3R 21494681 intergenic not near genes chr3R 21494738 intergenic not near genes chr3R 21494794 intergenic not near genes chr3R_7_21490001 chr3R_21490001 RAL-820 1360 chr3R 21505232 21505255 chr3R 21505314 21505337 4 82 1.5 3.5 2.5 1.1 105 chr3R 21505232 intron C15 + chr3R 21505284 intron C15 + chr3R 21505337 intron C15 + chr3R_4_21505001 chr3R_21505001 RAL-820 1361 chr3R 21506871 21506913 chr3R 21506957 21506992 4 81 0.0 1.5 0.8 2.2 121 chr3R 21506871 intron C15 + chr3R 21506932 intron C15 + chr3R 21506992 intron C15 + chr3R_4_21505001 chr3R_21505001 RAL-820 1362 chr3R 21519991 21520129 chr3R 21520092 21520219 6 98 2.0 2.0 2.0 2.0 228 chr3R 21519991 intergenic not near genes chr3R 21520105 intergenic not near genes chr3R 21520219 intergenic not near genes chr3R_6_21520001 chr3R_21520001 RAL-820 1363 chr3R 21641259 21641284 chr3R 21641335 21641360 14 75 1.5 2.5 2.0 4.7 101 chr3R 21641259 intron E2f - chr3R 21641310 intron E2f - chr3R 21641360 intron E2f - chr3R_14_21640001 chr3R_21640001 RAL-820 1364 chr3R 21652548 21652572 chr3R 21652628 21652652 8 80 0.0 1.0 0.5 5.3 104 chr3R 21652548 intron E2f - chr3R 21652600 intron E2f - chr3R 21652652 intron E2f - chr3R_8_21650001 chr3R_21650001 RAL-820 1365 chr3R 21761118 21761154 chr3R 21768509 21768546 mdg1 11 7389 1.5 2.0 1.8 3.9 7428 chr3R 21761118 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768546 exon CG42335 + chr3R_11_21760001 chr3R_21760001 RAL-820 1366 chr3R 21790962 21790990 chr3R 21791047 21791075 7 80 4.5 3.0 3.8 1.5 113 chr3R 21790962 intron CASK - chr3R 21791018 intron CASK - chr3R 21791075 intron CASK - chr3R_7_21790001 chr3R_21790001 RAL-820 1367 chr3R 8339246 8339246 chr3R 21907534 21907534 6 13568288 12.5 15.0 13.8 0.4 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-820 1368 chr3R 9620954 9620957 chr3R 21907534 21907534 8 12286578 5.5 15.0 10.2 0.7 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_8_15760001 chr3R_15760001 RAL-820 1369 chr3R 13104419 13104420 chr3R 21907534 21907534 8 8803114 19.0 15.0 17.0 0.4 8803115 chr3R 13104419 intron timeout + chr3R 17505976 intergenic Dscam3 - chr3R 21907534 intergenic CG6678 + chr3R_8_17505001 chr3R_17505001 RAL-820 1370 chr3R 21907534 21907534 chr3R 28831799 28831805 33 6924268 16.0 16.5 16.2 1.9 6924271 chr3R 21907534 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831805 intron WASp - chr3R_33_25365001 chr3R_25365001 RAL-820 1371 chr3R 9620954 9620956 chr3R 21907535 21907535 7 12286579 5.5 14.5 10.0 0.6 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_7_15760001 chr3R_15760001 RAL-820 1372 chr3R 19457915 19457915 chr3R 21907535 21907535 4 2449620 5.0 14.5 9.8 0.4 2449620 chr3R 19457915 3` UTR CG31221 + chr3R 20682725 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_20680001 chr3R_20680001 RAL-820 1373 chr3R 21907535 21907535 chr3R 28831801 28831802 70 6924266 15.5 16.0 15.8 4.2 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_70_25365001 chr3R_25365001 RAL-820 1374 chr3R 13104420 13104423 chr3R 21907536 21907536 4 8803115 18.5 15.0 16.8 0.2 8803116 chr3R 13104420 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-820 1375 chr3R 21907536 21907536 chr3R 28831801 28831802 54 6924266 15.5 16.0 15.8 3.2 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_54_25365001 chr3R_25365001 RAL-820 1376 chr3R 21937230 21937234 chr3R 21937307 21937311 4 77 3.0 3.5 3.2 1.0 81 chr3R 21937230 intergenic not near genes chr3R 21937270 intergenic not near genes chr3R 21937311 intergenic not near genes chr3R_4_21935001 chr3R_21935001 RAL-820 1377 chr3R 21952142 21952171 chr3R 21952227 21952256 6 85 1.0 1.5 1.2 2.7 114 chr3R 21952142 intron Eip93F + chr3R 21952199 intron Eip93F + chr3R 21952256 intron Eip93F + chr3R_6_21950001 chr3R_21950001 RAL-820 1378 chr3R 21958620 21958628 chr3R 21958710 21958719 5 90 2.0 5.5 3.8 1.0 99 chr3R 21958620 intron Eip93F + chr3R 21958670 intron Eip93F + chr3R 21958719 intron Eip93F + chr3R_5_21955001 chr3R_21955001 RAL-820 1379 chr3R 22234686 22234713 chr3R 22236005 22236031 pogo 5 1319 1.5 1.5 1.5 2.0 1345 chr3R 22234686 intron SKIP + chr3R 22235358 intron SKIP + chr3R 22236031 intron SKIP + chr3R_5_22235001 chr3R_22235001 RAL-820 1380 chr3R 22239491 22239507 chr3R 22248551 22248567 roo 5 9060 3.0 1.5 2.2 1.6 9076 chr3R 22239491 intron SKIP + chr3R 22244029 intron SKIP + chr3R 22248567 intron SKIP + chr3R_5_22240001 chr3R_22240001 RAL-820 1381 chr3R 22292472 22292499 chr3R 22292552 22292579 9 80 3.0 2.5 2.8 2.4 107 chr3R 22292472 intron SKIP + chr3R 22292526 intron SKIP + chr3R 22292579 intron SKIP + chr3R_9_22290001 chr3R_22290001 RAL-820 1382 chr3R 22428587 22428599 chr3R 22428663 22428675 5 76 2.5 2.0 2.2 1.6 88 chr3R 22428587 intron CG13847 - chr3R 22428631 intron CG13847 - chr3R 22428675 intron CG13847 - chr3R_5_22425001 chr3R_22425001 RAL-820 1383 chr3R 22450541 22450573 chr3R 22453181 22453213 NOF 10 2640 2.5 3.0 2.8 2.6 2672 chr3R 22450541 intron CG34376 + chr3R 22451877 intron CG34376 + chr3R 22453213 intron CG34376 + chr3R_10_22450001 chr3R_22450001 RAL-820 1384 chr3R 22492392 22492414 chr3R 22492473 22492495 5 81 0.0 1.5 0.8 2.8 103 chr3R 22492392 intergenic CG7045 + chr3R 22492444 intergenic CG7045 + chr3R 22492495 intergenic CG7045 +,CG7046 + chr3R_5_22490001 chr3R_22490001 RAL-820 1385 chr3R 22769089 22769120 chr3R 22769166 22769197 7 77 4.0 0.5 2.2 2.2 108 chr3R 22769089 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769143 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769197 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_7_22765001 chr3R_22765001 RAL-820 1386 chr3R 22797765 22797777 chr3R 22797851 22797863 7 86 1.0 0.0 0.5 4.7 98 chr3R 22797765 intergenic not near genes chr3R 22797814 intergenic not near genes chr3R 22797863 intergenic not near genes chr3R_7_22795001 chr3R_22795001 RAL-820 1387 chr3R 22797781 22797935 chr3R 22797845 22798031 10 87 0.0 0.0 0.0 10.0 250 chr3R 22797781 intergenic not near genes chr3R 22797906 intergenic not near genes chr3R 22798031 intergenic not near genes chr3R_10_22795001 chr3R_22795001 RAL-820 1388 chr3R 22860154 22860174 chr3R 22860246 22860266 10 91 1.5 3.0 2.2 3.1 112 chr3R 22860154 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860266 intergenic not near genes chr3R_10_22860001 chr3R_22860001 RAL-820 1389 chr3R 22888197 22888212 chr3R 22888469 22888478 4 270 7.0 0.5 3.8 0.8 281 chr3R 22888197 intergenic not near genes chr3R 22888338 intergenic not near genes chr3R 22888478 intergenic not near genes chr3R_4_22885001 chr3R_22885001 RAL-820 1390 chr3R 22927884 22927895 chr3R 22927979 22927986 4 94 3.0 6.0 4.5 0.7 102 chr3R 22927884 intron klg + chr3R 22927935 intron klg + chr3R 22927986 intron klg + chr3R_4_22925001 chr3R_22925001 RAL-820 1391 chr3R 22990349 22990375 chr3R 22990604 22990630 6 254 2.0 3.5 2.8 1.6 281 chr3R 22990349 intron,exon Nha2 -,Or94b + chr3R 22990490 intron,intron Nha2 -,Or94b + chr3R 22990630 intron Nha2 - chr3R_6_22990001 chr3R_22990001 RAL-820 1392 chr3R 23016200 23016227 chr3R 23016277 23016302 11 77 1.5 1.5 1.5 4.4 102 chr3R 23016200 intergenic not near genes chr3R 23016251 intergenic not near genes chr3R 23016302 intergenic not near genes chr3R_11_23015001 chr3R_23015001 RAL-820 1393 chr3R 23180188 23180209 chr3R 23180270 23180291 4 82 2.0 0.0 1.0 2.0 103 chr3R 23180188 intron Irk1 + chr3R 23180240 intron Irk1 + chr3R 23180291 intron Irk1 + chr3R_4_23180001 chr3R_23180001 RAL-820 1394 chr3R 23182696 23182706 chr3R 23182779 23182789 4 82 0.5 3.5 2.0 1.3 93 chr3R 23182696 intron Irk1 + chr3R 23182742 intron Irk1 + chr3R 23182789 intron Irk1 + chr3R_4_23180001 chr3R_23180001 RAL-820 1395 chr3R 23277350 23277373 chr3R 23277439 23277455 6 88 1.5 1.5 1.5 2.4 105 chr3R 23277350 intron orb - chr3R 23277402 intron orb - chr3R 23277455 intron orb - chr3R_6_23275001 chr3R_23275001 RAL-820 1396 chr3R 23303634 23303651 chr3R 23303711 23303729 5 78 2.0 1.5 1.8 1.8 95 chr3R 23303634 intron pnt - chr3R 23303682 intron pnt - chr3R 23303729 intron pnt - chr3R_5_23300001 chr3R_23300001 RAL-820 1397 chr3R 23311676 23311706 chr3R 23311770 23311799 9 91 4.0 2.0 3.0 2.2 123 chr3R 23311676 intron pnt - chr3R 23311738 intron pnt - chr3R 23311799 intron pnt - chr3R_9_23310001 chr3R_23310001 RAL-820 1398 chr3R 23319758 23319781 chr3R 23320416 23320439 4 658 1.5 0.5 1.0 2.0 681 chr3R 23319758 intron pnt - chr3R 23320098 intron pnt - chr3R 23320439 intron pnt - chr3R_4_23320001 chr3R_23320001 RAL-820 1399 chr3R 23342638 23342668 chr3R 23342773 23342803 4 135 2.0 3.0 2.5 1.1 165 chr3R 23342638 intron pnt - chr3R 23342720 intron pnt - chr3R 23342803 intron pnt - chr3R_4_23340001 chr3R_23340001 RAL-820 1400 chr3R 23543485 23543504 chr3R 23543922 23543940 6 434 4.5 1.0 2.8 1.6 455 chr3R 23543485 intergenic not near genes chr3R 23543712 intergenic not near genes chr3R 23543940 intergenic not near genes chr3R_6_23540001 chr3R_23540001 RAL-820 1401 chr3R 23572760 23572778 chr3R 23572872 23572898 7 119 1.0 2.0 1.5 2.8 138 chr3R 23572760 intron beat-IV + chr3R 23572829 intron beat-IV + chr3R 23572898 intron beat-IV + chr3R_7_23570001 chr3R_23570001 RAL-820 1402 chr3R 23629816 23629852 chr3R 23629894 23629917 11 76 2.0 1.5 1.8 3.9 101 chr3R 23629816 intron CG31145 - chr3R 23629866 intron CG31145 - chr3R 23629917 intron CG31145 - chr3R_11_23625001 chr3R_23625001 RAL-820 1403 chr3R 23684698 23684730 chr3R 23685184 23685198 roo 7 477 1.0 6.0 3.5 1.6 500 chr3R 23684698 exon CG18754 + chr3R 23684948 intron CG18754 + chr3R 23685198 exon CG18754 + chr3R_7_23680001 chr3R_23680001 RAL-820 1404 chr3R 23688488 23688496 chr3R 23688567 23688582 6 88 4.0 5.5 4.8 1.0 94 chr3R 23688488 intergenic SPE + chr3R 23688535 intergenic SPE +,CG10254 - chr3R 23688582 intergenic CG10254 -,SPE + chr3R_6_23685001 chr3R_23685001 RAL-820 1405 chr3R 23714719 23714738 chr3R 23714813 23714832 6 94 1.0 2.5 1.8 2.1 113 chr3R 23714719 intron nau - chr3R 23714776 intron nau - chr3R 23714832 intron nau - chr3R_6_23710001 chr3R_23710001 RAL-820 1406 chr3R 23820636 23820658 chr3R 23820719 23820742 5 84 2.0 1.5 1.8 1.8 106 chr3R 23820636 5` UTR CG34355 + chr3R 23820689 5` UTR CG34355 + chr3R 23820742 5` UTR CG34355 + chr3R_5_23820001 chr3R_23820001 RAL-820 1407 chr3R 23835403 23835430 chr3R 23844553 23844579 roo 6 9149 0.5 2.5 1.5 2.4 9176 chr3R 23835403 intron CG34355 + chr3R 23839991 intron CG34355 + chr3R 23844579 intron CG34355 + chr3R_6_23835001 chr3R_23835001 RAL-820 1408 chr3R 23949041 23949069 chr3R 23949117 23949146 6 77 1.5 0.0 0.8 3.3 105 chr3R 23949041 intergenic not near genes chr3R 23949094 intergenic not near genes chr3R 23949146 intergenic not near genes chr3R_6_23945001 chr3R_23945001 RAL-820 1409 chr3R 24023322 24023331 chr3R 24023797 24023806 4 475 3.5 4.0 3.8 0.8 484 chr3R 24023322 intron KrT95D - chr3R 24023564 intron KrT95D - chr3R 24023806 intron KrT95D - chr3R_4_24020001 chr3R_24020001 RAL-820 1410 chr3R 24072085 24072107 chr3R 24072523 24072545 jockey 10 437 8.0 4.5 6.2 1.4 460 chr3R 24072085 intron 4EHP - chr3R 24072315 intron 4EHP - chr3R 24072545 intron 4EHP - chr3R_10_24070001 chr3R_24070001 RAL-820 1411 chr3R 24073619 24073621 chr3R 24073708 24073710 4 89 5.0 5.0 5.0 0.7 91 chr3R 24073619 intron 4EHP - chr3R 24073664 intron 4EHP - chr3R 24073710 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-820 1412 chr3R 24076918 24076946 chr3R 24078385 24078413 hobo 7 1467 4.5 4.0 4.2 1.3 1495 chr3R 24076918 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078413 intron 4EHP - chr3R_7_24075001 chr3R_24075001 RAL-820 1413 chr3R 24100457 24100611 chr3R 24100552 24100835 9 152 1.5 1.0 1.2 4.1 378 chr3R 24100457 intron 4EHP - chr3R 24100646 intron 4EHP - chr3R 24100835 intron 4EHP - chr3R_9_24100001 chr3R_24100001 RAL-820 1414 chr3R 24207219 24207242 chr3R 24212294 24212318 flea 5 5076 4.5 3.0 3.8 1.0 5099 chr3R 24207219 intron twin - chr3R 24209768 intron twin - chr3R 24212318 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-820 1415 chr3R 24364422 24364454 chr3R 24364521 24364546 17 97 1.5 3.5 2.5 4.9 124 chr3R 24364422 intron CG17784 - chr3R 24364484 exon CG17784 - chr3R 24364546 exon CG17784 - chr3R_17_24360001 chr3R_24360001 RAL-820 1416 chr3R 24431600 24431624 chr3R 24431679 24431697 7 78 3.0 2.0 2.5 2.0 97 chr3R 24431600 intron nAChRalpha1 - chr3R 24431648 intron nAChRalpha1 - chr3R 24431697 intron nAChRalpha1 - chr3R_7_24430001 chr3R_24430001 RAL-820 1417 chr3R 24433477 24433494 chr3R 24433556 24433573 5 79 1.0 0.0 0.5 3.3 96 chr3R 24433477 intron nAChRalpha1 - chr3R 24433525 intron nAChRalpha1 - chr3R 24433573 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-820 1418 chr3R 24493276 24493307 chr3R 24493505 24493536 BS 10 229 3.0 1.5 2.2 3.1 260 chr3R 24493276 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493536 intergenic not near genes chr3R_10_24490001 chr3R_24490001 RAL-820 1419 chr3R 24624379 24624389 chr3R 24624468 24624478 4 89 2.5 5.5 4.0 0.8 99 chr3R 24624379 intron Syx18 - chr3R 24624428 intron Syx18 - chr3R 24624478 exon Syx18 - chr3R_4_24620001 chr3R_24620001 RAL-820 1420 chr3R 24670168 24670199 chr3R 24670250 24670283 8 84 0.0 2.5 1.2 3.6 115 chr3R 24670168 intron slo + chr3R 24670226 intron slo + chr3R 24670283 intron slo + chr3R_8_24670001 chr3R_24670001 RAL-820 1421 chr3R 24671222 24671246 chr3R 24671297 24671309 4 73 3.0 1.5 2.2 1.2 87 chr3R 24671222 intron slo + chr3R 24671266 intron slo + chr3R 24671309 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-820 1422 chr3R 24730091 24730118 chr3R 24732469 24732496 Doc 4 2376 1.5 0.5 1.0 2.0 2405 chr3R 24730091 intron tok + chr3R 24731294 intron tok + chr3R 24732496 intron tok + chr3R_4_24730001 chr3R_24730001 RAL-820 1423 chr3R 24789987 24790010 chr3R 24790132 24790155 6 144 3.0 2.0 2.5 1.7 168 chr3R 24789987 intron,5` UTR Ets96B +,CG13634 - chr3R 24790071 intron,5` UTR Ets96B +,CG13634 - chr3R 24790155 intron Ets96B + chr3R_6_24790001 chr3R_24790001 RAL-820 1424 chr3R 24854906 24854913 chr3R 24854988 24854995 5 82 0.5 2.5 1.5 2.0 89 chr3R 24854906 3` UTR HdacX - chr3R 24854950 3` UTR HdacX - chr3R 24854995 3` UTR HdacX - chr3R_5_24850001 chr3R_24850001 RAL-820 1425 chr3R 24912481 24912512 chr3R 24912563 24912592 7 82 1.5 1.5 1.5 2.8 111 chr3R 24912481 intergenic not near genes chr3R 24912536 intergenic CR44267 + chr3R 24912592 intergenic CR44267 + chr3R_7_24910001 chr3R_24910001 RAL-820 1426 chr3R 24927151 24927158 chr3R 24931942 24931949 Doc 4 4791 2.0 2.5 2.2 1.2 4798 chr3R 24927151 intergenic Trf4-2 + chr3R 24929550 intergenic not near genes chr3R 24931949 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-820 1427 chr3R 25004903 25004921 chr3R 25004986 25005004 8 82 0.0 3.0 1.5 3.2 101 chr3R 25004903 intron tnc + chr3R 25004954 intron tnc + chr3R 25005004 intron tnc + chr3R_8_25000001 chr3R_25000001 RAL-820 1428 chr3R 25209596 25209628 chr3R 25209678 25209710 10 82 1.0 2.0 1.5 4.0 114 chr3R 25209596 intron CG13654 + chr3R 25209653 intron CG13654 + chr3R 25209710 intron CG13654 + chr3R_10_25205001 chr3R_25205001 RAL-820 1429 chr3R 25235838 25235846 chr3R 25235918 25235926 4 80 1.5 2.0 1.8 1.4 88 chr3R 25235838 intergenic CG10420 - chr3R 25235882 intergenic CG10420 - chr3R 25235926 intergenic CG10420 - chr3R_4_25235001 chr3R_25235001 RAL-820 1430 chr3R 25377091 25377122 chr3R 25377357 25377388 15 265 4.0 4.0 4.0 3.0 297 chr3R 25377091 intron Fur1 - chr3R 25377240 intron Fur1 - chr3R 25377388 intron Fur1 - chr3R_15_25375001 chr3R_25375001 RAL-820 1431 chr3R 25522043 25522067 chr3R 25522120 25522124 4 72 1.5 0.0 0.8 2.2 81 chr3R 25522043 intron msi + chr3R 25522084 intron msi + chr3R 25522124 intron msi + chr3R_4_25520001 chr3R_25520001 RAL-820 1432 chr3R 25604785 25604818 chr3R 25604877 25604910 4 92 0.0 1.5 0.8 2.2 125 chr3R 25604785 3` UTR,intron msi +,ymp - chr3R 25604848 3` UTR,intron msi +,ymp - chr3R 25604910 3` UTR,intron msi +,ymp - chr3R_4_25600001 chr3R_25600001 RAL-820 1433 chr3R 25637364 25637388 chr3R 25637539 25637564 6 176 1.5 3.5 2.5 1.7 200 chr3R 25637364 intergenic jigr1 + chr3R 25637464 intergenic jigr1 + chr3R 25637564 intergenic jigr1 + chr3R_6_25635001 chr3R_25635001 RAL-820 1434 chr3R 25689135 25689163 chr3R 25689243 25689271 12 107 3.0 6.0 4.5 2.2 136 chr3R 25689135 intergenic not near genes chr3R 25689203 intergenic not near genes chr3R 25689271 intergenic not near genes chr3R_12_25685001 chr3R_25685001 RAL-820 1435 chr3R 25746584 25746607 chr3R 25746998 25747021 4 412 5.0 2.5 3.8 0.8 437 chr3R 25746584 intron LpR1 - chr3R 25746802 intron LpR1 - chr3R 25747021 exon LpR1 - chr3R_4_25745001 chr3R_25745001 RAL-820 1436 chr3R 25764096 25764105 chr3R 25764175 25764184 5 79 1.0 0.0 0.5 3.3 88 chr3R 25764096 intergenic not near genes chr3R 25764140 intergenic not near genes chr3R 25764184 intergenic not near genes chr3R_5_25760001 chr3R_25760001 RAL-820 1437 chr3R 25765879 25765908 chr3R 25765957 25765971 6 74 3.5 3.0 3.2 1.4 92 chr3R 25765879 intergenic not near genes chr3R 25765925 intergenic not near genes chr3R 25765971 intergenic not near genes chr3R_6_25765001 chr3R_25765001 RAL-820 1438 chr3R 25801265 25801293 chr3R 25802249 25802277 9 984 2.0 3.0 2.5 2.6 1012 chr3R 25801265 intergenic not near genes chr3R 25801771 intergenic not near genes chr3R 25802277 intergenic not near genes chr3R_9_25800001 chr3R_25800001 RAL-820 1439 chr3R 25832700 25832719 chr3R 25841881 25841901 roo 6 9182 1.5 4.5 3.0 1.5 9201 chr3R 25832700 exon alpha4GT2 + chr3R 25837300 intron alpha4GT2 + chr3R 25841901 exon alpha4GT2 + chr3R_6_25835001 chr3R_25835001 RAL-820 1440 chr3R 25900877 25900905 chr3R 25903594 25903623 4 2718 18.5 18.0 18.2 0.2 2746 chr3R 25900877 exon CG31091 + chr3R 25902250 intergenic CG31091 +,CG31089 + chr3R 25903623 exon,intron CG31089 +,CR43259 - chr3R_4_25900001 chr3R_25900001 RAL-820 1441 chr3R 25927506 25927539 chr3R 25927586 25927620 5 81 1.0 0.0 0.5 3.3 114 chr3R 25927506 intron CCAP-R - chr3R 25927563 intron CCAP-R - chr3R 25927620 intron CCAP-R - chr3R_5_25925001 chr3R_25925001 RAL-820 1442 chr3R 25952012 25952043 chr3R 25952152 25952181 8 138 0.5 3.5 2.0 2.7 169 chr3R 25952012 intron CCAP-R - chr3R 25952096 intron CCAP-R - chr3R 25952181 intron CCAP-R - chr3R_8_25950001 chr3R_25950001 RAL-820 1443 chr3R 26093852 26093869 chr3R 26093925 26093946 6 77 2.5 3.5 3.0 1.5 94 chr3R 26093852 intron dys - chr3R 26093899 intron dys - chr3R 26093946 intron dys - chr3R_6_26090001 chr3R_26090001 RAL-820 1444 chr3R 26121955 26121981 chr3R 26122052 26122078 6 97 0.0 3.5 1.8 2.1 123 chr3R 26121955 intron CG31324 + chr3R 26122016 intron CG31324 + chr3R 26122078 intron CG31324 + chr3R_6_26120001 chr3R_26120001 RAL-820 1445 chr3R 26256012 26256040 chr3R 26256093 26256120 6 78 3.5 3.0 3.2 1.4 108 chr3R 26256012 intron Ald - chr3R 26256066 intron Ald - chr3R 26256120 intron Ald - chr3R_6_26255001 chr3R_26255001 RAL-820 1446 chr3R 26294721 26294748 chr3R 26294799 26294826 6 78 2.0 1.5 1.8 2.1 105 chr3R 26294721 intergenic not near genes chr3R 26294774 intergenic not near genes chr3R 26294826 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-820 1447 chr3R 26310637 26310663 chr3R 26310719 26310751 15 86 2.5 6.0 4.2 2.9 114 chr3R 26310637 intergenic not near genes chr3R 26310694 intergenic not near genes chr3R 26310751 intergenic not near genes chr3R_15_26310001 chr3R_26310001 RAL-820 1448 chr3R 26376327 26376358 chr3R 26385487 26385517 roo 9 9160 2.0 0.5 1.2 4.1 9190 chr3R 26376327 intergenic not near genes chr3R 26380922 intergenic not near genes chr3R 26385517 intergenic not near genes chr3R_9_26380001 chr3R_26380001 RAL-820 1449 chr3R 26450514 26450548 chr3R 26450612 26450646 6 97 4.0 1.5 2.8 1.6 132 chr3R 26450514 exon Hex-t1 + chr3R 26450580 3` UTR Hex-t1 + chr3R 26450646 intergenic Hex-t2 +,Hex-t1 + chr3R_6_26450001 chr3R_26450001 RAL-820 1450 chr3R 26510524 26510534 chr3R 26519579 26519589 roo 7 9055 3.5 2.0 2.8 1.8 9065 chr3R 26510524 intron plum - chr3R 26515056 intron plum - chr3R 26519589 intron,5` UTR plum -,CR45226 + chr3R_7_26515001 chr3R_26515001 RAL-820 1451 chr3R 26558334 26558361 chr3R 26565640 26565672 Stalker4 12 7310 1.0 0.0 0.5 8.0 7338 chr3R 26558334 intron scrib + chr3R 26562003 intron scrib + chr3R 26565672 intron scrib + chr3R_12_26560001 chr3R_26560001 RAL-820 1452 chr3R 26641636 26641655 chr3R 26641723 26641742 4 87 5.5 2.5 4.0 0.8 106 chr3R 26641636 intergenic not near genes chr3R 26641689 intergenic not near genes chr3R 26641742 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-820 1453 chr3R 26660648 26660679 chr3R 26660732 26660763 9 84 3.5 5.0 4.2 1.7 115 chr3R 26660648 intron beat-VII - chr3R 26660706 intron beat-VII - chr3R 26660763 intron beat-VII - chr3R_9_26660001 chr3R_26660001 RAL-820 1454 chr3R 26710839 26710856 chr3R 26710923 26710940 4 84 1.5 3.5 2.5 1.1 101 chr3R 26710839 intron amon - chr3R 26710890 intron amon - chr3R 26710940 intron amon - chr3R_4_26710001 chr3R_26710001 RAL-820 1455 chr3R 26789601 26789616 chr3R 26789680 26789695 4 78 0.0 0.0 0.0 4.0 94 chr3R 26789601 intergenic not near genes chr3R 26789648 intergenic not near genes chr3R 26789695 intergenic not near genes chr3R_4_26785001 chr3R_26785001 RAL-820 1456 chr3R 27007406 27007438 chr3R 27016541 27016573 roo 4 9135 0.5 2.5 1.5 1.6 9167 chr3R 27007406 intron RYa-R + chr3R 27011990 intron RYa-R + chr3R 27016573 intron RYa-R + chr3R_4_27010001 chr3R_27010001 RAL-820 1457 chr3R 27197834 27197863 chr3R 27197912 27197941 6 78 1.0 2.5 1.8 2.1 107 chr3R 27197834 intergenic not near genes chr3R 27197888 intergenic not near genes chr3R 27197941 intergenic not near genes chr3R_6_27195001 chr3R_27195001 RAL-820 1458 chr3R 27292284 27292298 chr3R 27292395 27292410 6 111 5.5 0.5 3.0 1.5 126 chr3R 27292284 intergenic CG3348 - chr3R 27292347 intergenic CG3348 - chr3R 27292410 intergenic CG3348 - chr3R_6_27290001 chr3R_27290001 RAL-820 1459 chr3R 27329474 27329501 chr3R 27329551 27329578 6 77 1.5 2.0 1.8 2.1 104 chr3R 27329474 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329578 intergenic CG3330 - chr3R_6_27325001 chr3R_27325001 RAL-820 1460 chr3R 27342791 27342816 chr3R 27351372 27351397 Tirant 5 8581 2.5 1.0 1.8 1.8 8606 chr3R 27342791 intron CG42534 + chr3R 27347094 intron CG42534 + chr3R 27351397 intron CG42534 + chr3R_5_27345001 chr3R_27345001 RAL-820 1461 chr3R 27385693 27385716 chr3R 27385964 27385987 6 271 4.0 1.5 2.8 1.6 294 chr3R 27385693 intron side - chr3R 27385840 intron side - chr3R 27385987 intron side - chr3R_6_27385001 chr3R_27385001 RAL-820 1462 chr3R 27490943 27490968 chr3R 27491052 27491061 5 106 1.0 1.5 1.2 2.3 118 chr3R 27490943 intergenic not near genes chr3R 27491002 intergenic not near genes chr3R 27491061 intergenic not near genes chr3R_5_27490001 chr3R_27490001 RAL-820 1463 chr3R 27496594 27496627 chr3R 27496699 27496731 4 104 0.0 3.0 1.5 1.6 137 chr3R 27496594 intergenic not near genes chr3R 27496662 intergenic not near genes chr3R 27496731 intergenic not near genes chr3R_4_27495001 chr3R_27495001 RAL-820 1464 chr3R 27595052 27595081 chr3R 27595135 27595163 4 83 1.0 1.0 1.0 2.0 111 chr3R 27595052 intron CG5639 - chr3R 27595108 intron CG5639 - chr3R 27595163 intron CG5639 - chr3R_4_27595001 chr3R_27595001 RAL-820 1465 chr3R 27627089 27627120 chr3R 27627190 27627222 9 98 2.5 4.0 3.2 2.1 133 chr3R 27627089 intron Tusp + chr3R 27627156 intron Tusp + chr3R 27627222 intron Tusp + chr3R_9_27625001 chr3R_27625001 RAL-820 1466 chr3R 27648596 27648865 chr3R 27648677 27648942 11 78 1.5 1.0 1.2 5.0 346 chr3R 27648596 intron tau - chr3R 27648769 intron tau - chr3R 27648942 intron tau - chr3R_11_27645001 chr3R_27645001 RAL-820 1467 chr3R 27706779 27706808 chr3R 27706855 27706877 4 73 3.0 1.0 2.0 1.3 98 chr3R 27706779 intergenic CG12428 -,CG12877 + chr3R 27706828 intergenic CG12428 -,CG12877 + chr3R 27706877 intergenic CG12428 -,CG12877 + chr3R_4_27705001 chr3R_27705001 RAL-820 1468 chr3R 27799939 27799964 chr3R 27800021 27800046 7 82 1.5 3.0 2.2 2.2 107 chr3R 27799939 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800046 intron CG34353 - chr3R_7_27795001 chr3R_27795001 RAL-820 1469 chr3R 27862952 27862987 chr3R 27868257 27868291 Transpac 7 5304 2.5 2.5 2.5 2.0 5339 chr3R 27862952 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868291 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-820 1470 chr3R 27875701 27875731 chr3R 27882756 27882785 297 11 7054 2.5 1.5 2.0 3.7 7084 chr3R 27875701 intron CG34353 - chr3R 27879243 intron CG34353 - chr3R 27882785 intron CG34353 - chr3R_11_27875001 chr3R_27875001 RAL-820 1471 chr3R 27991334 27991358 chr3R 27991418 27991442 5 84 1.5 3.0 2.2 1.6 108 chr3R 27991334 intergenic not near genes chr3R 27991388 intergenic not near genes chr3R 27991442 intergenic not near genes chr3R_5_27990001 chr3R_27990001 RAL-820 1472 chr3R 28068496 28068516 chr3R 28073938 28073957 I-element 4 5442 3.0 1.0 2.0 1.3 5461 chr3R 28068496 intron CG34362 + chr3R 28071226 intron CG34362 + chr3R 28073957 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-820 1473 chr3R 28102580 28102602 chr3R 28102809 28102840 8 236 0.5 1.5 1.0 4.0 260 chr3R 28102580 intergenic not near genes chr3R 28102710 intergenic not near genes chr3R 28102840 intergenic not near genes chr3R_8_28100001 chr3R_28100001 RAL-820 1474 chr3R 28103327 28103360 chr3R 28103420 28103453 7 93 4.0 5.5 4.8 1.2 126 chr3R 28103327 intergenic not near genes chr3R 28103390 intergenic not near genes chr3R 28103453 intergenic not near genes chr3R_7_28100001 chr3R_28100001 RAL-820 1475 chr3R 28118569 28118866 chr3R 28118701 28118947 9 120 5.5 2.0 3.8 1.9 378 chr3R 28118569 intergenic not near genes chr3R 28118758 intergenic not near genes chr3R 28118947 intergenic not near genes chr3R_9_28115001 chr3R_28115001 RAL-820 1476 chr3R 28118869 28118880 chr3R 28118948 28118961 4 80 2.5 3.0 2.8 1.1 92 chr3R 28118869 intergenic not near genes chr3R 28118915 intergenic not near genes chr3R 28118961 intergenic not near genes chr3R_4_28115001 chr3R_28115001 RAL-820 1477 chr3R 28130067 28130102 chr3R 28130181 28130216 6 114 2.0 1.5 1.8 2.1 149 chr3R 28130067 intergenic not near genes chr3R 28130142 intergenic not near genes chr3R 28130216 intergenic not near genes chr3R_6_28130001 chr3R_28130001 RAL-820 1478 chr3R 28169841 28169877 chr3R 28170027 28170063 9 185 1.0 1.5 1.2 4.1 222 chr3R 28169841 intron CG34354 + chr3R 28169952 intron CG34354 + chr3R 28170063 intron CG34354 + chr3R_9_28165001 chr3R_28165001 RAL-820 1479 chr3R 28173671 28173699 chr3R 28181099 28181128 mdg1 5 7429 1.0 1.0 1.0 2.5 7457 chr3R 28173671 intron CG34354 + chr3R 28177400 intron CG34354 + chr3R 28181128 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-820 1480 chr3R 28201827 28201851 chr3R 28201924 28201949 6 97 1.0 2.5 1.8 2.1 122 chr3R 28201827 intron CG34354 + chr3R 28201888 intron CG34354 + chr3R 28201949 intron CG34354 + chr3R_6_28200001 chr3R_28200001 RAL-820 1481 chr3R 28223913 28223931 chr3R 28224369 28224387 4 456 1.5 2.5 2.0 1.3 474 chr3R 28223913 intron CG34354 + chr3R 28224150 intron CG34354 + chr3R 28224387 intron CG34354 + chr3R_4_28220001 chr3R_28220001 RAL-820 1482 chr3R 28233774 28233806 chr3R 28234010 28234011 7 231 2.5 1.0 1.8 2.5 237 chr3R 28233774 intron CG34354 + chr3R 28233892 intron CG34354 + chr3R 28234011 intron CG34354 + chr3R_7_28230001 chr3R_28230001 RAL-820 1483 chr3R 28253340 28253372 chr3R 28255848 28255879 jockey 6 2509 4.0 3.0 3.5 1.3 2539 chr3R 28253340 intergenic not near genes chr3R 28254610 intergenic not near genes chr3R 28255879 intergenic not near genes chr3R_6_28250001 chr3R_28250001 RAL-820 1484 chr3R 28282986 28283007 chr3R 28283615 28283636 7 629 4.5 3.5 4.0 1.4 650 chr3R 28282986 exon CG34436 + chr3R 28283311 exon CG34436 + chr3R 28283636 intergenic CG34437 +,CG34436 + chr3R_7_28280001 chr3R_28280001 RAL-820 1485 chr3R 28302107 28302133 chr3R 28302546 28302572 jockey 6 439 4.0 3.0 3.5 1.3 465 chr3R 28302107 intergenic not near genes chr3R 28302340 intergenic not near genes chr3R 28302572 intergenic not near genes chr3R_6_28300001 chr3R_28300001 RAL-820 1486 chr3R 28331514 28331524 chr3R 28331593 28331603 5 79 1.0 1.5 1.2 2.3 89 chr3R 28331514 intron larp - chr3R 28331558 intron larp - chr3R 28331603 intron larp - chr3R_5_28330001 chr3R_28330001 RAL-820 1487 chr3R 28425193 28425218 chr3R 28425268 28425290 5 71 3.0 1.5 2.2 1.6 97 chr3R 28425193 intron beat-VI + chr3R 28425242 intron beat-VI + chr3R 28425290 intron beat-VI + chr3R_5_28425001 chr3R_28425001 RAL-820 1488 chr3R 28594101 28594127 chr3R 28594180 28594206 6 78 1.0 1.0 1.0 3.0 105 chr3R 28594101 5` UTR CR43440 + chr3R 28594154 5` UTR CR43440 + chr3R 28594206 5` UTR CR43440 + chr3R_6_28590001 chr3R_28590001 RAL-820 1489 chr3R 28626230 28626245 chr3R 28626328 28626340 5 97 2.5 2.5 2.5 1.4 110 chr3R 28626230 intron CG10011 - chr3R 28626285 intron CG10011 - chr3R 28626340 intron CG10011 - chr3R_5_28625001 chr3R_28625001 RAL-820 1490 chr3R 28827689 28827707 chr3R 28827845 28827863 7 156 1.0 7.0 4.0 1.4 174 chr3R 28827689 intron WASp - chr3R 28827776 intron WASp - chr3R 28827863 intron WASp - chr3R_7_28825001 chr3R_28825001 RAL-820 1491 chr3R 21907534 21907534 chr3R 28831799 28831804 93 6924266 16.0 16.5 16.2 5.4 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_93_25365001 chr3R_25365001 RAL-820 1492 chr3R 28974364 28974387 chr3R 28974464 28974489 9 102 0.0 4.0 2.0 3.0 125 chr3R 28974364 intergenic not near genes chr3R 28974426 intergenic not near genes chr3R 28974489 intergenic not near genes chr3R_9_28970001 chr3R_28970001 RAL-820 1493 chr3R 29009954 29009983 chr3R 29010060 29010089 8 106 0.5 2.5 1.5 3.2 135 chr3R 29009954 intron wat - chr3R 29010022 intron wat - chr3R 29010089 intron wat - chr3R_8_29010001 chr3R_29010001 RAL-820 1494 chr3R 21907534 21907534 chr3R 29013340 29013340 4 7105806 16.0 12.0 14.0 0.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-820 1495 chr3R 29025041 29025076 chr3R 29025311 29025346 11 270 3.0 1.5 2.2 3.4 305 chr3R 29025041 intron CG14518 + chr3R 29025194 exon CG14518 + chr3R 29025346 exon CG14518 + chr3R_11_29025001 chr3R_29025001 RAL-820 1496 chr3R 29070061 29070079 chr3R 29070142 29070160 5 81 3.5 3.0 3.2 1.2 99 chr3R 29070061 intron CG11873 + chr3R 29070110 intron CG11873 + chr3R 29070160 intron CG11873 + chr3R_5_29070001 chr3R_29070001 RAL-820 1497 chr3R 29079379 29079411 chr3R 29080751 29080783 NOF 6 1372 1.5 3.5 2.5 1.7 1404 chr3R 29079379 intron CG11873 + chr3R 29080081 intron CG11873 + chr3R 29080783 intron CG11873 + chr3R_6_29080001 chr3R_29080001 RAL-820 1498 chr3R 29195986 29195996 chr3R 29196058 29196075 4 77 0.5 0.0 0.2 3.3 89 chr3R 29195986 intergenic not near genes chr3R 29196030 intergenic not near genes chr3R 29196075 intergenic not near genes chr3R_4_29195001 chr3R_29195001 RAL-820 1499 chr3R 29213059 29213090 chr3R 29213142 29213171 9 83 4.5 2.0 3.2 2.1 112 chr3R 29213059 intergenic not near genes chr3R 29213115 intergenic not near genes chr3R 29213171 intergenic not near genes chr3R_9_29210001 chr3R_29210001 RAL-820 1500 chr3R 29237268 29237283 chr3R 29239289 29239303 5 2020 9.5 7.5 8.5 0.5 2035 chr3R 29237268 exon CG11951 - chr3R 29238286 intron CG11951 - chr3R 29239303 exon CG31427 - chr3R_5_29235001 chr3R_29235001 RAL-820 1501 chr3R 29239224 29239249 chr3R 29245515 29245534 4 6289 6.0 16.5 11.2 0.3 6310 chr3R 29239224 exon CG31427 - chr3R 29242379 exon CG31445 - chr3R 29245534 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-820 1502 chr3R 29356066 29356082 chr3R 29356147 29356163 6 81 2.0 2.5 2.2 1.9 97 chr3R 29356066 intergenic CR45547 - chr3R 29356114 intergenic CR45547 - chr3R 29356163 3` UTR CR45547 - chr3R_6_29355001 chr3R_29355001 RAL-820 1503 chr3R 29406616 29406642 chr3R 29407902 29407928 jockey 8 1284 2.0 4.5 3.2 1.9 1312 chr3R 29406616 intron Ptp99A + chr3R 29407272 intron Ptp99A + chr3R 29407928 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-820 1504 chr3R 29472014 29472032 chr3R 29472107 29472125 5 92 1.0 0.5 0.8 2.8 111 chr3R 29472014 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472125 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-820 1505 chr3R 29539437 29539459 chr3R 29539513 29539534 8 76 2.5 0.0 1.2 3.6 97 chr3R 29539437 intergenic not near genes chr3R 29539486 intergenic not near genes chr3R 29539534 intergenic not near genes chr3R_8_29535001 chr3R_29535001 RAL-820 1506 chr3R 29566384 29566416 chr3R 29566461 29566493 6 77 2.0 2.5 2.2 1.9 109 chr3R 29566384 intergenic not near genes chr3R 29566438 intergenic not near genes chr3R 29566493 intergenic not near genes chr3R_6_29565001 chr3R_29565001 RAL-820 1507 chr3R 29590374 29590400 chr3R 29590467 29590493 11 93 3.5 3.5 3.5 2.4 119 chr3R 29590374 intron CG31041 - chr3R 29590434 intron CG31041 - chr3R 29590493 intron CG31041 - chr3R_11_29590001 chr3R_29590001 RAL-820 1508 chr3R 29627563 29627591 chr3R 29627654 29627681 9 91 0.5 4.0 2.2 2.8 118 chr3R 29627563 intergenic not near genes chr3R 29627622 intergenic not near genes chr3R 29627681 intergenic not near genes chr3R_9_29625001 chr3R_29625001 RAL-820 1509 chr3R 29719415 29719430 chr3R 29719501 29719516 10 86 1.5 3.0 2.2 3.1 101 chr3R 29719415 intron CG15506 + chr3R 29719466 intron CG15506 + chr3R 29719516 intron CG15506 + chr3R_10_29715001 chr3R_29715001 RAL-820 1510 chr3R 29738265 29738292 chr3R 29739731 29739759 hobo 7 1467 1.0 1.5 1.2 3.2 1494 chr3R 29738265 intergenic CG1969 +,CG7598 + chr3R 29739012 intron CG1969 + chr3R 29739759 5` UTR CG1969 + chr3R_7_29735001 chr3R_29735001 RAL-820 1511 chr3R 29880588 29880613 chr3R 29880668 29880668 4 70 2.5 2.0 2.2 1.2 80 chr3R 29880588 intron CG31038 + chr3R 29880628 intron CG31038 + chr3R 29880668 intron CG31038 + chr3R_4_29880001 chr3R_29880001 RAL-820 1512 chr3R 29882031 29882052 chr3R 29891188 29891209 roo 6 9156 2.5 4.5 3.5 1.3 9178 chr3R 29882031 intron CG31038 + chr3R 29886620 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-820 1513 chr3R 29950576 29950598 chr3R 29950653 29950675 7 77 3.5 5.5 4.5 1.3 99 chr3R 29950576 intergenic TkR99D - chr3R 29950626 intergenic TkR99D - chr3R 29950675 intergenic TkR99D - chr3R_7_29950001 chr3R_29950001 RAL-820 1514 chr3R 29963483 29963509 chr3R 29963584 29963611 12 102 0.5 5.0 2.8 3.2 128 chr3R 29963483 intron TkR99D - chr3R 29963547 intron TkR99D - chr3R 29963611 intron TkR99D - chr3R_12_29960001 chr3R_29960001 RAL-820 1515 chr3R 29966056 29966068 chr3R 29966140 29966153 6 84 4.0 3.5 3.8 1.2 97 chr3R 29966056 intron TkR99D - chr3R 29966104 intron TkR99D - chr3R 29966153 intron TkR99D - chr3R_6_29965001 chr3R_29965001 RAL-820 1516 chr3R 30084855 30084879 chr3R 30086322 30086346 hobo 7 1467 3.0 2.5 2.8 1.8 1491 chr3R 30084855 intron sima + chr3R 30085600 intron sima + chr3R 30086346 intron sima + chr3R_7_30085001 chr3R_30085001 RAL-820 1517 chr3R 30136950 30136976 chr3R 30137029 30137055 7 79 4.0 1.5 2.8 1.8 105 chr3R 30136950 exon AdoR - chr3R 30137002 intron AdoR - chr3R 30137055 intron AdoR - chr3R_7_30135001 chr3R_30135001 RAL-820 1518 chr3R 30238760 30238789 chr3R 30239924 30239953 1360 6 1164 1.5 0.0 0.8 3.3 1193 chr3R 30238760 intergenic not near genes chr3R 30239356 intergenic not near genes chr3R 30239953 intergenic not near genes chr3R_6_30235001 chr3R_30235001 RAL-820 1519 chr3R 30317329 30317354 chr3R 30324921 30324946 roo 4 7592 2.0 3.5 2.8 1.1 7617 chr3R 30317329 intron hdc + chr3R 30321138 intron hdc + chr3R 30324946 intron hdc + chr3R_4_30320001 chr3R_30320001 RAL-820 1520 chr3R 30330498 30330524 chr3R 30330573 30330604 7 79 2.5 1.0 1.8 2.5 106 chr3R 30330498 intron hdc + chr3R 30330551 intron hdc + chr3R 30330604 intron hdc + chr3R_7_30330001 chr3R_30330001 RAL-820 1521 chr3R 30364845 30364865 chr3R 30365014 30365038 4 172 2.5 1.5 2.0 1.3 193 chr3R 30364845 3` UTR hdc + chr3R 30364942 3` UTR hdc + chr3R 30365038 3` UTR hdc + chr3R_4_30360001 chr3R_30360001 RAL-820 1522 chr3R 30396225 30396248 chr3R 30404487 30404513 roo 4 8265 1.5 3.0 2.2 1.2 8288 chr3R 30396225 intergenic not near genes chr3R 30400369 intergenic not near genes chr3R 30404513 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-820 1523 chr3R 30440687 30440717 chr3R 30440946 30440976 7 259 3.5 3.0 3.2 1.7 289 chr3R 30440687 intron CG15537 - chr3R 30440832 intron CG15537 - chr3R 30440976 intron CG15537 - chr3R_7_30440001 chr3R_30440001 RAL-820 1524 chr3R 30456397 30456414 chr3R 30456474 30456494 7 79 0.0 3.0 1.5 2.8 97 chr3R 30456397 intergenic CG2224 - chr3R 30456446 3` UTR CG2224 - chr3R 30456494 3` UTR CG2224 - chr3R_7_30455001 chr3R_30455001 RAL-820 1525 chr3R 30458019 30458043 chr3R 30458099 30458123 7 80 2.5 1.5 2.0 2.3 104 chr3R 30458019 intron CG2224 - chr3R 30458071 intron CG2224 - chr3R 30458123 intron CG2224 - chr3R_7_30455001 chr3R_30455001 RAL-820 1526 chr3R 30471899 30471935 chr3R 30471975 30472011 6 76 1.5 1.0 1.2 2.7 112 chr3R 30471899 intron PH4alphaEFB + chr3R 30471955 intron PH4alphaEFB + chr3R 30472011 intron PH4alphaEFB + chr3R_6_30470001 chr3R_30470001 RAL-820 1527 chr3R 30480477 30480513 chr3R 30482945 30482981 jockey 13 2467 1.0 3.0 2.0 4.3 2504 chr3R 30480477 intron PH4alphaEFB + chr3R 30481729 intron PH4alphaEFB + chr3R 30482981 intron PH4alphaEFB + chr3R_13_30480001 chr3R_30480001 RAL-820 1528 chr3R 30495169 30495191 chr3R 30495289 30495311 4 120 1.5 2.0 1.8 1.4 142 chr3R 30495169 intron PH4alphaMP - chr3R 30495240 intron PH4alphaMP - chr3R 30495311 intron PH4alphaMP - chr3R_4_30495001 chr3R_30495001 RAL-820 1529 chr3R 30498411 30498435 chr3R 30498611 30498635 5 200 0.0 2.0 1.0 2.5 224 chr3R 30498411 intron PH4alphaNE1 - chr3R 30498523 intron PH4alphaNE1 - chr3R 30498635 intron PH4alphaNE1 - chr3R_5_30495001 chr3R_30495001 RAL-820 1530 chr3R 30544659 30544681 chr3R 30544737 30544760 9 79 0.5 1.0 0.8 5.0 101 chr3R 30544659 intron tmod + chr3R 30544710 intron tmod + chr3R 30544760 intron tmod + chr3R_9_30540001 chr3R_30540001 RAL-820 1531 chr3R 30592514 30592536 chr3R 30592624 30592645 11 109 4.0 3.5 3.8 2.3 131 chr3R 30592514 intergenic CG2246 - chr3R 30592580 intergenic CG2246 - chr3R 30592645 intergenic CG2246 - chr3R_11_30590001 chr3R_30590001 RAL-820 1532 chr3R 30627601 30627637 chr3R 30627681 30627714 11 77 0.5 3.5 2.0 3.7 113 chr3R 30627601 3` UTR CG2267 - chr3R 30627658 exon CG2267 - chr3R 30627714 exon CG2267 - chr3R_11_30625001 chr3R_30625001 RAL-820 1533 chr3R 30690167 30690181 chr3R 30690244 30690265 6 82 2.5 1.5 2.0 2.0 98 chr3R 30690167 intergenic Spn100A + chr3R 30690216 intergenic Spn100A + chr3R 30690265 intergenic Spn100A + chr3R_6_30690001 chr3R_30690001 RAL-820 1534 chr3R 30859421 30859426 chr3R 30859484 30859504 4 74 2.0 4.0 3.0 1.0 83 chr3R 30859421 intergenic not near genes chr3R 30859462 intergenic not near genes chr3R 30859504 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-820 1535 chr3R 30864975 30864999 chr3R 30865251 30865272 6 276 3.0 2.0 2.5 1.7 297 chr3R 30864975 intergenic not near genes chr3R 30865124 intergenic not near genes chr3R 30865272 intergenic not near genes chr3R_6_30865001 chr3R_30865001 RAL-820 1536 chr3R 30900553 30900566 chr3R 30901688 30901701 4 1135 1.5 4.0 2.8 1.1 1148 chr3R 30900553 3` UTR Cyp4c3 + chr3R 30901127 intron CG33483 - chr3R 30901701 intron CG33483 - chr3R_4_30900001 chr3R_30900001 RAL-820 1537 chr3R 30985689 30985708 chr3R 30985774 30985793 6 85 1.5 1.5 1.5 2.4 104 chr3R 30985689 intron 5-HT7 - chr3R 30985741 intron 5-HT7 - chr3R 30985793 intron 5-HT7 - chr3R_6_30985001 chr3R_30985001 RAL-820 1538 chr3R 31042116 31042144 chr3R 31042203 31042230 12 86 0.5 5.0 2.8 3.2 114 chr3R 31042116 intron CanA1 + chr3R 31042173 intron CanA1 + chr3R 31042230 intron CanA1 + chr3R_12_31040001 chr3R_31040001 RAL-820 1539 chr3R 31067034 31067054 chr3R 31067160 31067181 8 126 1.5 6.0 3.8 1.7 147 chr3R 31067034 intron Sox100B + chr3R 31067108 intron Sox100B + chr3R 31067181 intron Sox100B + chr3R_8_31065001 chr3R_31065001 RAL-820 1540 chr3R 31074233 31074260 chr3R 31081831 31081858 springer 8 7598 0.5 3.0 1.8 2.9 7625 chr3R 31074233 intron Sox100B + chr3R 31078046 intron Sox100B + chr3R 31081858 intron Sox100B + chr3R_8_31075001 chr3R_31075001 RAL-820 1541 chr3R 31146747 31146777 chr3R 31146825 31146855 8 78 2.5 1.5 2.0 2.7 108 chr3R 31146747 intron Gycbeta100B + chr3R 31146801 intron Gycbeta100B + chr3R 31146855 intron Gycbeta100B + chr3R_8_31145001 chr3R_31145001 RAL-820 1542 chr3R 31274370 31274383 chr3R 31274446 31274461 4 77 4.5 2.0 3.2 1.0 91 chr3R 31274370 intergenic not near genes chr3R 31274416 intergenic not near genes chr3R 31274461 intergenic not near genes chr3R_4_31270001 chr3R_31270001 RAL-820 1543 chr3R 31279378 31279397 chr3R 31285564 31285579 diver 6 6188 4.0 4.0 4.0 1.2 6201 chr3R 31279378 intergenic not near genes chr3R 31282478 intergenic not near genes chr3R 31285579 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-820 1544 chr3R 31348057 31348090 chr3R 31348133 31348167 12 77 1.0 1.5 1.2 5.5 110 chr3R 31348057 intron CG34347 + chr3R 31348112 intron CG34347 + chr3R 31348167 intron CG34347 + chr3R_12_31345001 chr3R_31345001 RAL-820 1545 chr3R 31412713 31412743 chr3R 31412803 31412836 5 92 1.0 0.5 0.8 2.8 123 chr3R 31412713 intron Gprk2 + chr3R 31412774 intron Gprk2 + chr3R 31412836 intron Gprk2 + chr3R_5_31410001 chr3R_31410001 RAL-820 1546 chr3R 31413088 31413123 chr3R 31418288 31418321 copia 12 5200 1.0 0.0 0.5 8.0 5233 chr3R 31413088 intron Gprk2 + chr3R 31415704 intron Gprk2 + chr3R 31418321 intron Gprk2 + chr3R_12_31415001 chr3R_31415001 RAL-820 1547 chr3R 31426878 31426913 chr3R 31426968 31427005 10 92 3.5 1.5 2.5 2.9 127 chr3R 31426878 intron Gprk2 + chr3R 31426942 intron Gprk2 + chr3R 31427005 intron Gprk2 + chr3R_10_31425001 chr3R_31425001 RAL-820 1548 chr3R 31606161 31606168 chr3R 31606318 31606330 4 161 3.5 0.0 1.8 1.4 169 chr3R 31606161 intron CycG - chr3R 31606246 intron CycG - chr3R 31606330 intron CycG - chr3R_4_31605001 chr3R_31605001 RAL-820 1549 chr3R 31630061 31630085 chr3R 31630165 31630189 6 105 1.5 2.5 2.0 2.0 128 chr3R 31630061 intron kek6 + chr3R 31630125 intron kek6 + chr3R 31630189 intron kek6 + chr3R_6_31630001 chr3R_31630001 RAL-820 1550 chr3R 31691554 31691560 chr3R 31696300 31696326 Doc 6 4762 4.5 4.0 4.2 1.2 4772 chr3R 31691554 intergenic not near genes chr3R 31693940 intergenic not near genes chr3R 31696326 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-820 1551 chr3R 31726667 31726689 chr3R 31726753 31726766 5 84 0.0 3.5 1.8 1.8 99 chr3R 31726667 intron ttk + chr3R 31726716 intron ttk + chr3R 31726766 intron ttk + chr3R_5_31725001 chr3R_31725001 RAL-820 1552 chr3R 31774870 31774896 chr3R 31775015 31775041 9 145 3.5 1.0 2.2 2.8 171 chr3R 31774870 3` UTR sip3 + chr3R 31774956 3` UTR sip3 + chr3R 31775041 3` UTR sip3 + chr3R_9_31770001 chr3R_31770001 RAL-820 1553 chr3R 31851239 31851264 chr3R 31851322 31851346 7 83 1.0 2.0 1.5 2.8 107 chr3R 31851239 intergenic heph - chr3R 31851292 intergenic heph - chr3R 31851346 intergenic heph - chr3R_7_31850001 chr3R_31850001 RAL-820 1554 chr3R 31911699 31911800 chr3R 31911785 31911883 7 86 0.0 0.0 0.0 7.0 184 chr3R 31911699 intron heph - chr3R 31911791 intron heph - chr3R 31911883 intron heph - chr3R_7_31910001 chr3R_31910001 RAL-820 1555 chr3R 31931197 31931209 chr3R 31931279 31931292 4 83 2.5 3.0 2.8 1.1 95 chr3R 31931197 intron heph - chr3R 31931244 intron heph - chr3R 31931292 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-820 1556 chr3R 31947755 31947785 chr3R 31947842 31947874 7 89 2.0 1.0 1.5 2.8 119 chr3R 31947755 intron heph - chr3R 31947814 intron heph - chr3R 31947874 intron heph - chr3R_7_31945001 chr3R_31945001 RAL-820 1557 chr3R 31997994 31998021 chr3R 32005464 32005491 blood 6 7468 1.0 1.0 1.0 3.0 7497 chr3R 31997994 intron heph - chr3R 32001742 intron heph - chr3R 32005491 intron heph - chr3R_6_32000001 chr3R_32000001 RAL-820 1558 chr3R 32013274 32013308 chr3R 32013391 32013426 9 118 1.5 0.0 0.8 5.0 152 chr3R 32013274 intron,5` UTR heph -,CR45556 + chr3R 32013350 intron,5` UTR heph -,CR45556 + chr3R 32013426 intron heph - chr3R_9_32010001 chr3R_32010001 RAL-820 1559 chr4 671605 671629 chr4 680188 680212 Tirant 5 8583 3.5 2.5 3.0 1.2 8607 chr4 671605 intron CG11360 + chr4 675908 intron CG11360 + chr4 680212 intron CG11360 + chr4_5_675001 chr4_675001 RAL-820 1560 chrX 318469 318504 chrX 323555 323588 flea 6 5085 2.5 2.0 2.2 1.9 5119 chrX 318469 intron,intron CG3777 +,CG32816 - chrX 321028 intron,intron CG3777 +,CG32816 - chrX 323588 intron,intron CG3777 +,CG32816 - chrX_6_320001 chrX_320001 RAL-820 1561 chrX 428438 428451 chrX 434622 434636 3S18 4 6185 2.0 2.0 2.0 1.3 6198 chrX 428438 intron CG32816 - chrX 431537 intron CG32816 - chrX 434636 intron CG32816 - chrX_4_430001 chrX_430001 RAL-820 1562 chrX 440995 441020 chrX 441073 441098 8 78 4.0 3.0 3.5 1.8 103 chrX 440995 intron CG32816 - chrX 441046 intron CG32816 - chrX 441098 intron CG32816 - chrX_8_440001 chrX_440001 RAL-820 1563 chrX 611141 611167 chrX 611231 611247 7 89 2.5 4.5 3.5 1.6 106 chrX 611141 intron CG13366 - chrX 611194 intron CG13366 - chrX 611247 intron CG13366 - chrX_7_610001 chrX_610001 RAL-820 1564 chrX 667654 667684 chrX 667738 667768 9 84 0.5 4.0 2.2 2.8 114 chrX 667654 intergenic not near genes chrX 667711 intergenic not near genes chrX 667768 intergenic not near genes chrX_9_665001 chrX_665001 RAL-820 1565 chrX 670271 670295 chrX 670351 670368 8 79 0.0 1.5 0.8 4.4 97 chrX 670271 intergenic not near genes chrX 670320 intergenic not near genes chrX 670368 intergenic not near genes chrX_8_670001 chrX_670001 RAL-820 1566 chrX 680840 680864 chrX 680923 680943 6 82 3.5 2.5 3.0 1.5 103 chrX 680840 intergenic not near genes chrX 680892 intergenic not near genes chrX 680943 intergenic not near genes chrX_6_680001 chrX_680001 RAL-820 1567 chrX 695293 695324 chrX 695370 695401 7 73 2.0 3.0 2.5 2.0 108 chrX 695293 intron sdk + chrX 695347 intron sdk + chrX 695401 intron sdk + chrX_7_695001 chrX_695001 RAL-820 1568 chrX 778125 778160 chrX 778215 778250 7 90 1.5 0.5 1.0 3.5 125 chrX 778125 intron fz3 + chrX 778188 intron fz3 + chrX 778250 intron fz3 + chrX_7_775001 chrX_775001 RAL-820 1569 chrX 868500 868514 chrX 868577 868584 6 76 1.5 4.0 2.8 1.6 84 chrX 868500 intron CG43867 - chrX 868542 intron CG43867 - chrX 868584 intron CG43867 - chrX_6_865001 chrX_865001 RAL-820 1570 chrX 906705 906730 chrX 908494 908518 S-element 4 1788 1.5 4.5 3.0 1.0 1813 chrX 906705 intron CG43867 - chrX 907612 intron CG43867 - chrX 908518 intron CG43867 - chrX_4_905001 chrX_905001 RAL-820 1571 chrX 983771 983798 chrX 983889 983916 4 118 0.5 1.5 1.0 2.0 145 chrX 983771 intergenic not near genes chrX 983844 intergenic not near genes chrX 983916 intergenic not near genes chrX_4_980001 chrX_980001 RAL-820 1572 chrX 1053117 1053118 chrX 16983076 16983077 4 15929959 6.0 7.5 6.8 0.5 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-820 1573 chrX 1127282 1127297 chrX 1127589 1127604 5 307 1.0 3.0 2.0 1.7 322 chrX 1127282 intron CG3655 - chrX 1127443 intron CG3655 - chrX 1127604 intron CG3655 - chrX_5_1125001 chrX_1125001 RAL-820 1574 chrX 1253729 1253764 chrX 1253811 1253846 12 82 1.0 3.0 2.0 4.0 117 chrX 1253729 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253846 intron Atf3 - chrX_12_1250001 chrX_1250001 RAL-820 1575 chrX 1357783 1357809 chrX 1367953 1367978 Doc 7 10170 3.0 1.5 2.2 2.2 10195 chrX 1357783 intergenic png - chrX 1362880 intergenic not near genes chrX 1367978 intergenic not near genes chrX_7_1360001 chrX_1360001 RAL-820 1576 chrX 1627976 1628003 chrX 1635444 1635470 gtwin 11 7467 2.5 4.0 3.2 2.6 7494 chrX 1627976 intron,intron Mur2B -,br + chrX 1631723 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_11_1630001 chrX_1630001 RAL-820 1577 chrX 1762642 1762661 chrX 1762727 1762746 10 85 1.0 3.0 2.0 3.3 104 chrX 1762642 intergenic not near genes chrX 1762694 intergenic not near genes chrX 1762746 intergenic not near genes chrX_10_1760001 chrX_1760001 RAL-820 1578 chrX 1954886 1954915 chrX 1962826 1962855 Stalker2 9 7939 2.5 1.5 2.0 3.0 7969 chrX 1954886 intron Hr4 + chrX 1958870 intron Hr4 + chrX 1962855 intron Hr4 + chrX_9_1955001 chrX_1955001 RAL-820 1579 chrX 2164374 2164413 chrX 2164461 2164500 11 86 2.0 1.0 1.5 4.4 126 chrX 2164374 intron CG3630 + chrX 2164437 intron CG3630 + chrX 2164500 intron CG3630 + chrX_11_2160001 chrX_2160001 RAL-820 1580 chrX 2187589 2187619 chrX 2188350 2188381 11 761 20.5 22.5 21.5 0.5 792 chrX 2187589 3` UTR CG17777 + chrX 2187985 exon CG3457 + chrX 2188381 exon CG3457 + chrX_11_2185001 chrX_2185001 RAL-820 1581 chrX 2223673 2223703 chrX 2226725 2226734 4 3036 25.5 21.0 23.2 0.2 3061 chrX 2223673 intergenic CG14052 + chrX 2225204 intergenic pcx +,CG14052 + chrX 2226734 exon pcx + chrX_4_2225001 chrX_2225001 RAL-820 1582 chrX 2501346 2501373 chrX 2501507 2501537 8 163 2.5 2.0 2.2 2.5 191 chrX 2501346 intron trol - chrX 2501442 intron trol - chrX 2501537 intron trol - chrX_8_2500001 chrX_2500001 RAL-820 1583 chrX 2539258 2539282 chrX 2539479 2539502 4 220 1.0 2.5 1.8 1.4 244 chrX 2539258 intron trol - chrX 2539380 intron trol - chrX 2539502 intron trol - chrX_4_2535001 chrX_2535001 RAL-820 1584 chrX 2559360 2559386 chrX 2559448 2559473 8 88 1.0 2.0 1.5 3.2 113 chrX 2559360 intron Pdfr + chrX 2559416 intron Pdfr + chrX 2559473 intron Pdfr + chrX_8_2555001 chrX_2555001 RAL-820 1585 chrX 2578817 2578846 chrX 2578908 2578938 8 91 2.5 0.5 1.5 3.2 121 chrX 2578817 intergenic Pdfr +,Vha36-3 - chrX 2578878 intergenic Vha36-3 -,Pdfr + chrX 2578938 intergenic Vha36-3 -,Pdfr + chrX_8_2575001 chrX_2575001 RAL-820 1586 chrX 2844912 2844932 chrX 2852322 2852342 mdg1 4 7410 0.5 1.5 1.0 2.0 7430 chrX 2844912 intron kirre + chrX 2848627 intron kirre + chrX 2852342 intron kirre + chrX_4_2845001 chrX_2845001 RAL-820 1587 chrX 3082600 3082606 chrX 3082676 3082677 4 75 2.5 3.0 2.8 1.1 77 chrX 3082600 intron kirre + chrX 3082638 intron kirre + chrX 3082677 intron kirre + chrX_4_3080001 chrX_3080001 RAL-820 1588 chrX 3270897 3270916 chrX 3270974 3270993 6 77 2.0 4.0 3.0 1.5 96 chrX 3270897 intron dnc + chrX 3270945 intron dnc + chrX 3270993 intron dnc + chrX_6_3270001 chrX_3270001 RAL-820 1589 chrX 3305866 3305897 chrX 3307021 3307052 6 1154 2.0 0.5 1.2 2.7 1186 chrX 3305866 intron dnc + chrX 3306459 intron dnc + chrX 3307052 intron dnc + chrX_6_3305001 chrX_3305001 RAL-820 1590 chrX 3459988 3460013 chrX 3460064 3460090 9 77 1.0 0.5 0.8 5.0 102 chrX 3459988 intron,intron CR44999 +,CG16782 - chrX 3460039 intron,5` UTR CR44999 +,CG16782 - chrX 3460090 intron,5` UTR CR44999 +,CG16782 - chrX_9_3460001 chrX_3460001 RAL-820 1591 chrX 3493095 3493121 chrX 3502253 3502280 roo 4 9158 1.5 0.0 0.8 2.2 9185 chrX 3493095 intron,intron CR44999 +,Gas8 - chrX 3497688 intron,intron CR44999 +,Gas8 - chrX 3502280 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-820 1592 chrX 3597551 3597577 chrX 3619719 3619745 roo 7 22168 4.5 3.5 4.0 1.4 22194 chrX 3597551 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619745 intron AstA-R1 + chrX_7_3605001 chrX_3605001 RAL-820 1593 chrX 3630549 3630571 chrX 3630625 3630647 7 76 0.5 1.5 1.0 3.5 98 chrX 3630549 intron AstA-R1 + chrX 3630598 intron AstA-R1 + chrX 3630647 intron AstA-R1 + chrX_7_3630001 chrX_3630001 RAL-820 1594 chrX 3657424 3657446 chrX 3657504 3657526 9 78 2.5 5.0 3.8 1.9 102 chrX 3657424 intron AstA-R1 + chrX 3657475 intron AstA-R1 + chrX 3657526 intron AstA-R1 + chrX_9_3655001 chrX_3655001 RAL-820 1595 chrX 3693015 3693045 chrX 3693098 3693129 6 84 2.0 3.0 2.5 1.7 114 chrX 3693015 5` UTR Mnt + chrX 3693072 5` UTR Mnt + chrX 3693129 5` UTR Mnt + chrX_6_3690001 chrX_3690001 RAL-820 1596 chrX 3713106 3713135 chrX 3713214 3713244 5 109 0.5 1.0 0.8 2.8 138 chrX 3713106 intron Rala - chrX 3713175 intron Rala - chrX 3713244 intron Rala - chrX_5_3710001 chrX_3710001 RAL-820 1597 chrX 3842325 3842349 chrX 3842566 3842590 pogo 6 241 3.0 3.5 3.2 1.4 265 chrX 3842325 intron ec + chrX 3842458 intron ec + chrX 3842590 intron ec + chrX_6_3840001 chrX_3840001 RAL-820 1598 chrX 3874746 3874772 chrX 3874827 3874853 6 78 4.0 2.5 3.2 1.4 107 chrX 3874746 intron CG2930 + chrX 3874800 intron CG2930 + chrX 3874853 intron CG2930 + chrX_6_3870001 chrX_3870001 RAL-820 1599 chrX 3930045 3930074 chrX 3930126 3930155 5 81 0.5 1.0 0.8 2.8 110 chrX 3930045 5` UTR CG42541 - chrX 3930100 5` UTR CG42541 - chrX 3930155 5` UTR CG42541 - chrX_5_3930001 chrX_3930001 RAL-820 1600 chrX 3986870 3986893 chrX 3994503 3994526 412 5 7633 3.0 3.5 3.2 1.2 7656 chrX 3986870 intergenic not near genes chrX 3990698 intergenic not near genes chrX 3994526 intergenic not near genes chrX_5_3990001 chrX_3990001 RAL-820 1601 chrX 4091430 4091444 chrX 4091513 4091528 4 83 2.0 2.5 2.2 1.2 98 chrX 4091430 3` UTR CG43689 + chrX 4091479 3` UTR CG43689 + chrX 4091528 3` UTR CG43689 + chrX_4_4090001 chrX_4090001 RAL-820 1602 chrX 4101885 4101897 chrX 4101963 4101977 4 80 0.0 4.5 2.2 1.2 92 chrX 4101885 exon CG15375 + chrX 4101931 exon CG15375 + chrX 4101977 exon CG15375 + chrX_4_4100001 chrX_4100001 RAL-820 1603 chrX 4157903 4157913 chrX 4164956 4164966 297 4 7053 1.5 1.5 1.5 1.6 7063 chrX 4157903 intron Fas2 - chrX 4161434 intron Fas2 - chrX 4164966 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-820 1604 chrX 4299504 4299537 chrX 4299970 4300003 5 466 2.0 2.0 2.0 1.7 499 chrX 4299504 intergenic not near genes chrX 4299754 intergenic CG12692 - chrX 4300003 intergenic CG12692 - chrX_5_4295001 chrX_4295001 RAL-820 1605 chrX 4344674 4344706 chrX 4345492 4345524 7 818 1.5 0.5 1.0 3.5 850 chrX 4344674 intron norpA + chrX 4345099 intron norpA + chrX 4345524 intron norpA + chrX_7_4345001 chrX_4345001 RAL-820 1606 chrX 4574899 4574931 chrX 4574990 4575022 5 91 0.0 2.5 1.2 2.3 123 chrX 4574899 intron CR32773 - chrX 4574960 intron CR32773 - chrX 4575022 intron CR32773 - chrX_5_4570001 chrX_4570001 RAL-820 1607 chrX 4575621 4575642 chrX 4575710 4575731 5 88 2.0 1.5 1.8 1.8 110 chrX 4575621 intron CR32773 - chrX 4575676 intron CR32773 - chrX 4575731 intron CR32773 - chrX_5_4575001 chrX_4575001 RAL-820 1608 chrX 4700392 4700422 chrX 4700735 4700765 jockey 5 343 1.5 2.5 2.0 1.7 373 chrX 4700392 3` UTR ctp + chrX 4700578 3` UTR ctp + chrX 4700765 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-820 1609 chrX 4731814 4731834 chrX 4736907 4736920 jockey 5 5092 3.0 2.0 2.5 1.4 5106 chrX 4731814 intergenic not near genes chrX 4734367 intergenic not near genes chrX 4736920 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-820 1610 chrX 4755420 4755438 chrX 4755482 4755515 6 74 0.0 1.5 0.8 3.3 95 chrX 4755420 intergenic not near genes chrX 4755468 intergenic not near genes chrX 4755515 intergenic not near genes chrX_6_4755001 chrX_4755001 RAL-820 1611 chrX 4763252 4763283 chrX 4763740 4763771 Stalker4 6 487 0.5 0.5 0.5 4.0 519 chrX 4763252 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763771 intergenic not near genes chrX_6_4760001 chrX_4760001 RAL-820 1612 chrX 4931350 4931381 chrX 4931444 4931474 5 93 12.5 11.0 11.8 0.4 124 chrX 4931350 intron CG44774 - chrX 4931412 intron CG44774 - chrX 4931474 intron CG44774 - chrX_5_4930001 chrX_4930001 RAL-820 1613 chrX 4957644 4957665 chrX 4957733 4957753 8 88 2.0 1.0 1.5 3.2 109 chrX 4957644 intron CR44833 - chrX 4957698 intron CR44833 - chrX 4957753 intron CR44833 - chrX_8_4955001 chrX_4955001 RAL-820 1614 chrX 4990050 4990074 chrX 4997264 4997288 roo 7 7214 3.5 1.5 2.5 2.0 7238 chrX 4990050 intron CR44833 - chrX 4993669 intron CR44833 - chrX 4997288 intron CR44833 - chrX_7_4990001 chrX_4990001 RAL-820 1615 chrX 5338715 5338735 chrX 5339961 5339988 jockey 5 1248 2.0 0.5 1.2 2.3 1273 chrX 5338715 intergenic not near genes chrX 5339352 intergenic not near genes chrX 5339988 intergenic SK + chrX_5_5335001 chrX_5335001 RAL-820 1616 chrX 5792575 5792748 chrX 5792709 5792831 5 101 0.0 0.0 0.0 5.0 256 chrX 5792575 exon CG12239 + chrX 5792703 exon CG12239 + chrX 5792831 exon CG12239 + chrX_5_5790001 chrX_5790001 RAL-820 1617 chrX 5883811 5883833 chrX 5884051 5884073 pogo 9 240 1.5 1.0 1.2 4.1 262 chrX 5883811 intron CR45668 - chrX 5883942 intron CR45668 - chrX 5884073 intron CR45668 - chrX_9_5880001 chrX_5880001 RAL-820 1618 chrX 5884167 5884191 chrX 5884408 5884432 pogo 8 241 3.0 3.0 3.0 2.0 265 chrX 5884167 intron CR45668 - chrX 5884300 intron CR45668 - chrX 5884432 intron CR45668 - chrX_8_5880001 chrX_5880001 RAL-820 1619 chrX 5890365 5890377 chrX 5890439 5890453 5 74 2.0 1.5 1.8 1.8 88 chrX 5890365 intron CR45668 - chrX 5890409 intron CR45668 - chrX 5890453 intron CR45668 - chrX_5_5890001 chrX_5890001 RAL-820 1620 chrX 5936959 5936983 chrX 5937045 5937070 4 87 1.0 1.5 1.2 1.8 111 chrX 5936959 intron CG3726 + chrX 5937014 intron CG3726 + chrX 5937070 intron CG3726 + chrX_4_5935001 chrX_5935001 RAL-820 1621 chrX 6100499 6100525 chrX 6100621 6100648 4 118 2.0 2.5 2.2 1.2 149 chrX 6100499 intron Nep1 + chrX 6100574 intron Nep1 + chrX 6100648 intron Nep1 + chrX_4_6100001 chrX_6100001 RAL-820 1622 chrX 6118696 6118732 chrX 6118778 6118814 8 81 1.0 3.0 2.0 2.7 118 chrX 6118696 intron Ca-alpha1T - chrX 6118755 intron Ca-alpha1T - chrX 6118814 intron Ca-alpha1T - chrX_8_6115001 chrX_6115001 RAL-820 1623 chrX 6171593 6171616 chrX 6179026 6179049 Quasimodo 5 7433 1.0 3.5 2.2 1.6 7456 chrX 6171593 intron Ca-alpha1T - chrX 6175321 intron Ca-alpha1T - chrX 6179049 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-820 1624 chrX 6335222 6335244 chrX 6337732 6337754 Tirant 8 2510 0.0 4.0 2.0 2.7 2532 chrX 6335222 intergenic not near genes chrX 6336488 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_8_6335001 chrX_6335001 RAL-820 1625 chrX 6388672 6388693 chrX 6388748 6388769 4 76 1.5 0.5 1.0 2.0 97 chrX 6388672 intergenic not near genes chrX 6388720 intergenic not near genes chrX 6388769 intergenic not near genes chrX_4_6385001 chrX_6385001 RAL-820 1626 chrX 6392869 6392900 chrX 6397634 6397665 Doc 10 4764 1.5 5.0 3.2 2.4 4796 chrX 6392869 intergenic not near genes chrX 6395267 intergenic not near genes chrX 6397665 intergenic not near genes chrX_10_6395001 chrX_6395001 RAL-820 1627 chrX 6562816 6562851 chrX 6571298 6571333 Tirant 16 8482 4.5 3.0 3.8 3.3 8517 chrX 6562816 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571333 intron CG34417 + chrX_16_6565001 chrX_6565001 RAL-820 1628 chrX 6605480 6605509 chrX 6608502 6608531 Burdock 6 3022 2.5 3.5 3.0 1.5 3051 chrX 6605480 intron pigs + chrX 6607006 intron pigs + chrX 6608531 intron pigs + chrX_6_6605001 chrX_6605001 RAL-820 1629 chrX 6618463 6618475 chrX 6618541 6618552 5 78 3.0 5.0 4.0 1.0 89 chrX 6618463 intron pigs + chrX 6618508 intron pigs + chrX 6618552 intron pigs + chrX_5_6615001 chrX_6615001 RAL-820 1630 chrX 6897577 6897708 chrX 6897654 6897818 11 90 0.5 0.5 0.5 7.3 241 chrX 6897577 intergenic not near genes chrX 6897698 intergenic not near genes chrX 6897818 intergenic not near genes chrX_11_6895001 chrX_6895001 RAL-820 1631 chrX 6917956 6917990 chrX 6918045 6918079 10 87 1.5 1.5 1.5 4.0 123 chrX 6917956 intron CG14431 + chrX 6918018 intron CG14431 + chrX 6918079 intron CG14431 + chrX_10_6915001 chrX_6915001 RAL-820 1632 chrX 7023599 7023619 chrX 7030989 7031009 Tabor 7 7390 3.0 3.0 3.0 1.8 7410 chrX 7023599 intron CG12541 - chrX 7027304 intron CG12541 - chrX 7031009 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-820 1633 chrX 7069804 7069811 chrX 7069883 7069891 4 80 2.5 3.0 2.8 1.1 87 chrX 7069804 5` UTR CG4607 + chrX 7069848 5` UTR CG4607 + chrX 7069891 5` UTR CG4607 + chrX_4_7065001 chrX_7065001 RAL-820 1634 chrX 7106988 7107018 chrX 7107115 7107142 4 126 0.5 3.0 1.8 1.4 154 chrX 7106988 3` UTR fz4 - chrX 7107065 3` UTR fz4 - chrX 7107142 3` UTR fz4 - chrX_4_7105001 chrX_7105001 RAL-820 1635 chrX 7125243 7125271 chrX 7134402 7134430 roo 7 9159 2.0 1.0 1.5 2.8 9187 chrX 7125243 intergenic not near genes chrX 7129836 intergenic not near genes chrX 7134430 intergenic not near genes chrX_7_7125001 chrX_7125001 RAL-820 1636 chrX 7570634 7570668 chrX 7570768 7570802 9 133 0.5 0.0 0.2 7.5 168 chrX 7570634 intergenic not near genes chrX 7570718 intergenic not near genes chrX 7570802 intergenic not near genes chrX_9_7570001 chrX_7570001 RAL-820 1637 chrX 7832433 7832461 chrX 7832522 7832550 6 88 1.0 1.0 1.0 3.0 117 chrX 7832433 intron CG1402 + chrX 7832492 intron CG1402 + chrX 7832550 intron CG1402 + chrX_6_7830001 chrX_7830001 RAL-820 1638 chrX 7845730 7845741 chrX 7847221 7847232 hopper2 5 1490 2.0 2.0 2.0 1.7 1502 chrX 7845730 intergenic not near genes chrX 7846481 intergenic not near genes chrX 7847232 intergenic not near genes chrX_5_7845001 chrX_7845001 RAL-820 1639 chrX 8263781 8263794 chrX 8263867 8263880 5 86 1.0 1.5 1.2 2.3 99 chrX 8263781 intron CG1632 + chrX 8263830 intron CG1632 + chrX 8263880 intron CG1632 + chrX_5_8260001 chrX_8260001 RAL-820 1640 chrX 8649470 8649492 chrX 8649590 8649612 7 120 0.0 3.0 1.5 2.8 142 chrX 8649470 intron oc - chrX 8649541 intron oc - chrX 8649612 intron oc - chrX_7_8645001 chrX_8645001 RAL-820 1641 chrX 8677927 8677953 chrX 8688052 8688078 8 10125 26.5 16.5 21.5 0.4 10151 chrX 8677927 exon CG12772 + chrX 8683002 intron CG11284 + chrX 8688078 exon CG11284 + chrX_8_8680001 chrX_8680001 RAL-820 1642 chrX 8708691 8708717 chrX 8708874 8708900 8 184 13.5 9.0 11.2 0.7 209 chrX 8708691 intergenic not near genes chrX 8708796 intergenic not near genes chrX 8708900 intergenic not near genes chrX_8_8705001 chrX_8705001 RAL-820 1643 chrX 8747630 8747657 chrX 8747706 8747735 7 78 1.5 2.0 1.8 2.5 105 chrX 8747630 intergenic not near genes chrX 8747682 intergenic not near genes chrX 8747735 intergenic not near genes chrX_7_8745001 chrX_8745001 RAL-820 1644 chrX 8922333 8922363 chrX 8922767 8922797 jockey 8 433 1.5 2.0 1.8 2.9 464 chrX 8922333 intron rdgA + chrX 8922565 intron rdgA + chrX 8922797 intron rdgA + chrX_8_8920001 chrX_8920001 RAL-820 1645 chrX 8948756 8948792 chrX 8956266 8956302 roo 4 7510 1.5 0.5 1.0 2.0 7546 chrX 8948756 intron rdgA + chrX 8952529 intron rdgA + chrX 8956302 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-820 1646 chrX 9152077 9152104 chrX 9152160 9152187 4 83 2.5 1.0 1.8 1.4 110 chrX 9152077 intergenic dalao +,His3.3B - chrX 9152132 intergenic dalao +,His3.3B - chrX 9152187 intergenic dalao +,His3.3B - chrX_4_9150001 chrX_9150001 RAL-820 1647 chrX 9508135 9508163 chrX 9509651 9509681 jockey 6 1517 1.5 1.5 1.5 2.4 1546 chrX 9508135 intron CG32700 - chrX 9508908 intron CG32700 - chrX 9509681 intron CG32700 - chrX_6_9505001 chrX_9505001 RAL-820 1648 chrX 9575794 9575814 chrX 9576118 9576134 mdg3 7 323 4.0 4.0 4.0 1.4 340 chrX 9575794 intron,exon CG32699 -,CG42395 - chrX 9575964 intron,intron CG32699 -,CG42395 - chrX 9576134 intron,5` UTR CG32699 -,CG42395 - chrX_7_9575001 chrX_9575001 RAL-820 1649 chrX 9794781 9794794 chrX 9794859 9794872 7 78 1.0 4.0 2.5 2.0 91 chrX 9794781 intron CG32698 + chrX 9794826 intron CG32698 + chrX 9794872 intron CG32698 + chrX_7_9790001 chrX_9790001 RAL-820 1650 chrX 9839371 9839381 chrX 9839453 9839463 4 82 0.0 4.0 2.0 1.3 92 chrX 9839371 intron CG32698 + chrX 9839417 intron CG32698 + chrX 9839463 intron CG32698 + chrX_4_9835001 chrX_9835001 RAL-820 1651 chrX 9940307 9940311 chrX 9940379 9940391 6 78 1.0 3.5 2.2 1.9 84 chrX 9940307 intergenic not near genes chrX 9940349 intergenic not near genes chrX 9940391 intergenic not near genes chrX_6_9940001 chrX_9940001 RAL-820 1652 chrX 10035450 10035459 chrX 10035536 10035545 5 86 1.0 3.5 2.2 1.6 95 chrX 10035450 exon Cht6 + chrX 10035498 exon Cht6 + chrX 10035545 exon Cht6 + chrX_5_10035001 chrX_10035001 RAL-820 1653 chrX 10138223 10138246 chrX 10145719 10145750 412 4 7502 2.0 1.5 1.8 1.4 7527 chrX 10138223 intron,intron RhoU +,CR44894 - chrX 10141986 intron,intron RhoU +,CR44894 - chrX 10145750 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-820 1654 chrX 10150013 10150027 chrX 10150235 10150250 4 223 1.5 0.0 0.8 2.2 237 chrX 10150013 intron CR44894 - chrX 10150132 intron CR44894 - chrX 10150250 intron CR44894 - chrX_4_10150001 chrX_10150001 RAL-820 1655 chrX 10154291 10154308 chrX 10154367 10154384 10 76 0.5 2.5 1.5 4.0 93 chrX 10154291 intron,intron CR44894 -,CG12645 + chrX 10154338 intron,intron CR44894 -,CG12645 + chrX 10154384 intron,exon CR44894 -,CG12645 + chrX_10_10150001 chrX_10150001 RAL-820 1656 chrX 10267321 10267331 chrX 10276471 10276481 roo 4 9150 2.0 2.0 2.0 1.3 9160 chrX 10267321 3` UTR alpha-Man-I - chrX 10271901 intron alpha-Man-I - chrX 10276481 3` UTR alpha-Man-I - chrX_4_10270001 chrX_10270001 RAL-820 1657 chrX 10295255 10295286 chrX 10295654 10295685 7 399 1.5 2.0 1.8 2.5 430 chrX 10295255 intron alpha-Man-I - chrX 10295470 intron alpha-Man-I - chrX 10295685 intron alpha-Man-I - chrX_7_10295001 chrX_10295001 RAL-820 1658 chrX 10317570 10317582 chrX 10317647 10317660 5 78 3.0 2.0 2.5 1.4 90 chrX 10317570 intron alpha-Man-I - chrX 10317615 intron alpha-Man-I - chrX 10317660 intron alpha-Man-I - chrX_5_10315001 chrX_10315001 RAL-820 1659 chrX 10367189 10367208 chrX 10367298 10367317 6 109 1.5 5.5 3.5 1.3 128 chrX 10367189 exon CG32679 - chrX 10367253 intron CG32679 - chrX 10367317 intron CG32679 - chrX_6_10365001 chrX_10365001 RAL-820 1660 chrX 10506499 10506526 chrX 10506586 10506612 6 86 3.0 2.5 2.8 1.6 113 chrX 10506499 intron spri - chrX 10506556 intron spri - chrX 10506612 intron spri - chrX_6_10505001 chrX_10505001 RAL-820 1661 chrX 10550334 10550367 chrX 10550412 10550445 9 78 2.0 1.5 1.8 3.2 111 chrX 10550334 intron spri - chrX 10550390 intron spri - chrX 10550445 intron spri - chrX_9_10550001 chrX_10550001 RAL-820 1662 chrX 10550854 10550887 chrX 10552321 10552354 hobo 9 1467 2.0 2.5 2.2 2.8 1500 chrX 10550854 intron spri - chrX 10551604 intron spri - chrX 10552354 intron spri - chrX_9_10550001 chrX_10550001 RAL-820 1663 chrX 10590795 10590815 chrX 10590871 10590891 4 76 2.0 1.5 1.8 1.4 96 chrX 10590795 intergenic Hmr - chrX 10590843 intergenic Hmr - chrX 10590891 intergenic Hmr - chrX_4_10590001 chrX_10590001 RAL-820 1664 chrX 10644648 10644680 chrX 10644930 10644962 5 282 1.5 3.0 2.2 1.6 314 chrX 10644648 intron X11Lbeta + chrX 10644805 intron X11Lbeta + chrX 10644962 intron X11Lbeta + chrX_5_10640001 chrX_10640001 RAL-820 1665 chrX 10655402 10655434 chrX 10655914 10655942 12 511 2.0 4.0 3.0 3.0 540 chrX 10655402 intron X11Lbeta + chrX 10655672 intron X11Lbeta + chrX 10655942 intron X11Lbeta + chrX_12_10655001 chrX_10655001 RAL-820 1666 chrX 10694161 10694182 chrX 10694241 10694260 7 79 3.5 5.5 4.5 1.3 99 chrX 10694161 intron X11Lbeta + chrX 10694210 intron X11Lbeta + chrX 10694260 intron X11Lbeta + chrX_7_10690001 chrX_10690001 RAL-820 1667 chrX 10772683 10772694 chrX 10772766 10772777 Tirant 4 83 2.0 2.0 2.0 1.3 94 chrX 10772683 intron CG15211 + chrX 10772730 intron CG15211 + chrX 10772777 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-820 1668 chrX 11095996 11096027 chrX 11103098 11103129 HMS-Beagle 8 7102 1.0 3.0 2.0 2.7 7133 chrX 11095996 intergenic not near genes chrX 11099562 intergenic not near genes chrX 11103129 intron CG42249 + chrX_8_11095001 chrX_11095001 RAL-820 1669 chrX 11184250 11184279 chrX 11189326 11189354 flea 5 5075 3.0 1.0 2.0 1.7 5104 chrX 11184250 intergenic not near genes chrX 11186802 intergenic not near genes chrX 11189354 intergenic not near genes chrX_5_11185001 chrX_11185001 RAL-820 1670 chrX 11268570 11268589 chrX 11270063 11270080 hopper2 4 1492 2.0 7.0 4.5 0.7 1510 chrX 11268570 intron CG44422 - chrX 11269325 intron CG44422 - chrX 11270080 intron CG44422 - chrX_4_11265001 chrX_11265001 RAL-820 1671 chrX 11312056 11312080 chrX 11319409 11319433 Stalker2 6 7353 2.5 2.5 2.5 1.7 7377 chrX 11312056 intergenic not near genes chrX 11315744 intergenic not near genes chrX 11319433 intergenic not near genes chrX_6_11315001 chrX_11315001 RAL-820 1672 chrX 11571455 11571482 chrX 11571696 11571723 pogo 6 241 2.0 3.0 2.5 1.7 268 chrX 11571455 3` UTR Kmn1 - chrX 11571589 3` UTR Kmn1 - chrX 11571723 3` UTR Kmn1 - chrX_6_11570001 chrX_11570001 RAL-820 1673 chrX 11633429 11633439 chrX 11640483 11640493 297 4 7054 3.0 1.5 2.2 1.2 7064 chrX 11633429 intron Ptp10D + chrX 11636961 intron Ptp10D + chrX 11640493 intron Ptp10D + chrX_4_11635001 chrX_11635001 RAL-820 1674 chrX 11651212 11651227 chrX 11651295 11651318 5 89 3.0 3.5 3.2 1.2 106 chrX 11651212 intron Ptp10D + chrX 11651265 intron Ptp10D + chrX 11651318 intron Ptp10D + chrX_5_11650001 chrX_11650001 RAL-820 1675 chrX 11719878 11719898 chrX 11719957 11719978 5 80 0.5 1.5 1.0 2.5 100 chrX 11719878 3` UTR prtp + chrX 11719928 intergenic prtp +,Tango10 + chrX 11719978 intergenic prtp +,Tango10 + chrX_5_11715001 chrX_11715001 RAL-820 1676 chrX 12150548 12150574 chrX 12150630 12150656 7 82 0.5 0.5 0.5 4.7 108 chrX 12150548 intron Ten-a + chrX 12150602 intron Ten-a + chrX 12150656 intron Ten-a + chrX_7_12150001 chrX_12150001 RAL-820 1677 chrX 12350776 12350806 chrX 12350856 12350877 10 79 3.0 0.0 1.5 4.0 101 chrX 12350776 intergenic not near genes chrX 12350826 intergenic not near genes chrX 12350877 intergenic not near genes chrX_10_12350001 chrX_12350001 RAL-820 1678 chrX 12430947 12430962 chrX 12431025 12431040 4 78 3.0 2.0 2.5 1.1 93 chrX 12430947 intergenic not near genes chrX 12430994 intergenic not near genes chrX 12431040 intergenic not near genes chrX_4_12430001 chrX_12430001 RAL-820 1679 chrX 12532644 12532661 chrX 12532790 12532807 6 146 1.0 0.0 0.5 4.0 163 chrX 12532644 intron CG43921 - chrX 12532726 intron CG43921 - chrX 12532807 intron CG43921 - chrX_6_12530001 chrX_12530001 RAL-820 1680 chrX 12752279 12752310 chrX 12752366 12752397 4 87 1.0 3.5 2.2 1.2 118 chrX 12752279 5` UTR CR44619 + chrX 12752338 5` UTR CR44619 + chrX 12752397 5` UTR CR44619 + chrX_4_12750001 chrX_12750001 RAL-820 1681 chrX 12767382 12767399 chrX 12767597 12767614 5 215 4.5 2.0 3.2 1.2 232 chrX 12767382 intron CG3812 + chrX 12767498 intron CG3812 + chrX 12767614 intron CG3812 + chrX_5_12765001 chrX_12765001 RAL-820 1682 chrX 12953902 12953926 chrX 12954040 12954064 5 138 0.0 1.5 0.8 2.8 162 chrX 12953902 intron hec - chrX 12953983 intron hec - chrX 12954064 intron hec - chrX_5_12950001 chrX_12950001 RAL-820 1683 chrX 12971699 12971720 chrX 12971767 12971768 4 67 2.0 4.5 3.2 1.0 69 chrX 12971699 intron,exon CR43636 -,CG15721 + chrX 12971734 intron,exon CR43636 -,CG15721 + chrX 12971768 intron,exon CR43636 -,CG15721 + chrX_4_12970001 chrX_12970001 RAL-820 1684 chrX 12985979 12986001 chrX 12986075 12986097 6 96 1.0 3.5 2.2 1.9 118 chrX 12985979 intergenic not near genes chrX 12986038 intergenic not near genes chrX 12986097 intergenic not near genes chrX_6_12985001 chrX_12985001 RAL-820 1685 chrX 13091571 13091592 chrX 13100862 13100883 11 9292 20.5 16.5 18.5 0.6 9312 chrX 13091571 intron lic + chrX 13096227 3` UTR CG43313 - chrX 13100883 intron CG43313 - chrX_11_13095001 chrX_13095001 RAL-820 1686 chrX 13161691 13161723 chrX 13161768 13161800 5 77 1.0 1.0 1.0 2.5 109 chrX 13161691 3` UTR CG12096 + chrX 13161746 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161800 3` UTR,3` UTR CG12096 +,CG34411 - chrX_5_13160001 chrX_13160001 RAL-820 1687 chrX 13319045 13319075 chrX 13319191 13319221 6 146 1.5 2.0 1.8 2.1 176 chrX 13319045 exon IP3K2 + chrX 13319133 intron IP3K2 + chrX 13319221 intron IP3K2 + chrX_6_13315001 chrX_13315001 RAL-820 1688 chrX 13401505 13401522 chrX 13401857 13401874 jockey 4 352 0.5 1.5 1.0 2.0 369 chrX 13401505 intergenic CG1673 +,CG12725 - chrX 13401690 intergenic CG12725 -,CG1673 + chrX 13401874 3` UTR CG12725 - chrX_4_13400001 chrX_13400001 RAL-820 1689 chrX 13734100 13734112 chrX 13734196 13734208 5 96 3.0 6.5 4.8 0.9 108 chrX 13734100 intron g - chrX 13734154 intron g - chrX 13734208 intron g - chrX_5_13730001 chrX_13730001 RAL-820 1690 chrX 13756602 13756611 chrX 13759470 13759479 4 2869 13.5 16.0 14.8 0.3 2877 chrX 13756602 exon CG32625 - chrX 13758040 exon Rtc1 + chrX 13759479 intergenic Yp3 + chrX_4_13755001 chrX_13755001 RAL-820 1691 chrX 13875962 13875988 chrX 13876046 13876072 4 84 0.0 0.5 0.2 3.3 110 chrX 13875962 intron mamo - chrX 13876017 intron mamo - chrX 13876072 intron mamo - chrX_4_13875001 chrX_13875001 RAL-820 1692 chrX 13935515 13935522 chrX 13935598 13935600 4 82 3.0 1.5 2.2 1.2 85 chrX 13935515 intron mamo - chrX 13935558 intron mamo - chrX 13935600 intron mamo - chrX_4_13935001 chrX_13935001 RAL-820 1693 chrX 13965995 13966008 chrX 13966094 13966107 6 99 0.5 2.0 1.2 2.7 112 chrX 13965995 intron mamo - chrX 13966051 intron mamo - chrX 13966107 intron mamo - chrX_6_13965001 chrX_13965001 RAL-820 1694 chrX 14105027 14105043 chrX 14114178 14114194 roo 5 9150 5.5 4.0 4.8 0.9 9167 chrX 14105027 intergenic not near genes chrX 14109610 intergenic not near genes chrX 14114194 5` UTR CR44657 + chrX_5_14105001 chrX_14105001 RAL-820 1695 chrX 14131494 14131524 chrX 14131567 14131604 6 74 4.5 1.0 2.8 1.6 110 chrX 14131494 intergenic not near genes chrX 14131549 intergenic not near genes chrX 14131604 intergenic not near genes chrX_6_14130001 chrX_14130001 RAL-820 1696 chrX 14209469 14209485 chrX 14209560 14209576 4 91 2.5 1.5 2.0 1.3 107 chrX 14209469 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209522 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209576 intron,intron l(1)G0007 +,l(1)G0469 - chrX_4_14205001 chrX_14205001 RAL-820 1697 chrX 14300547 14300575 chrX 14300624 14300652 4 77 0.5 1.0 0.8 2.2 105 chrX 14300547 intergenic not near genes chrX 14300600 intergenic not near genes chrX 14300652 intergenic not near genes chrX_4_14300001 chrX_14300001 RAL-820 1698 chrX 14560275 14560302 chrX 14560359 14560386 4 82 0.5 2.5 1.5 1.6 111 chrX 14560275 intergenic not near genes chrX 14560330 intergenic not near genes chrX 14560386 intergenic not near genes chrX_4_14560001 chrX_14560001 RAL-820 1699 chrX 14579106 14579125 chrX 14579185 14579206 7 81 2.0 1.5 1.8 2.5 100 chrX 14579106 intergenic not near genes chrX 14579156 intergenic not near genes chrX 14579206 intergenic not near genes chrX_7_14575001 chrX_14575001 RAL-820 1700 chrX 14636461 14636490 chrX 14641901 14641930 I-element 5 5436 1.0 0.5 0.8 2.8 5469 chrX 14636461 intron NetA - chrX 14639196 intron NetA - chrX 14641930 intron NetA - chrX_5_14635001 chrX_14635001 RAL-820 1701 chrX 14767957 14767974 chrX 14768037 14768054 9 80 3.0 2.5 2.8 2.4 97 chrX 14767957 intergenic not near genes chrX 14768006 intergenic not near genes chrX 14768054 intergenic not near genes chrX_9_14765001 chrX_14765001 RAL-820 1702 chrX 14778036 14778061 chrX 14782833 14782858 Doc 7 4796 2.0 4.5 3.2 1.7 4822 chrX 14778036 intergenic CG5347 + chrX 14780447 intergenic not near genes chrX 14782858 intergenic Ag5r2 - chrX_7_14780001 chrX_14780001 RAL-820 1703 chrX 14818763 14818795 chrX 14823967 14823998 copia 6 5204 1.0 1.0 1.0 3.0 5235 chrX 14818763 intron rut - chrX 14821380 intron rut - chrX 14823998 intron rut - chrX_6_14820001 chrX_14820001 RAL-820 1704 chrX 14825360 14825367 chrX 14825436 14825444 6 77 7.5 5.0 6.2 0.8 84 chrX 14825360 intron rut - chrX 14825402 intron rut - chrX 14825444 intron rut - chrX_6_14825001 chrX_14825001 RAL-820 1705 chrX 14897822 14897842 chrX 14897906 14897925 5 84 0.0 3.0 1.5 2.0 103 chrX 14897822 intron Flo2 + chrX 14897874 intron Flo2 + chrX 14897925 intron Flo2 + chrX_5_14895001 chrX_14895001 RAL-820 1706 chrX 14936863 14936887 chrX 14946120 14946144 roo 5 9257 1.0 3.0 2.0 1.7 9281 chrX 14936863 intron pdgy - chrX 14941504 intron pdgy - chrX 14946144 intron pdgy - chrX_5_14940001 chrX_14940001 RAL-820 1707 chrX 14952438 14952462 chrX 14952605 14952630 5 167 2.5 1.5 2.0 1.7 192 chrX 14952438 intron,3` UTR pdgy -,CR44831 - chrX 14952534 intron,3` UTR pdgy -,CR44831 - chrX 14952630 intron,3` UTR pdgy -,CR44831 - chrX_5_14950001 chrX_14950001 RAL-820 1708 chrX 14968090 14968101 chrX 14968166 14968180 5 78 1.0 3.5 2.2 1.6 90 chrX 14968090 intron eag + chrX 14968135 intron eag + chrX 14968180 intron eag + chrX_5_14965001 chrX_14965001 RAL-820 1709 chrX 14991779 14991809 chrX 14991857 14991887 6 78 1.5 2.0 1.8 2.1 108 chrX 14991779 intron eag + chrX 14991833 intron eag + chrX 14991887 intron eag + chrX_6_14990001 chrX_14990001 RAL-820 1710 chrX 15256504 15256524 chrX 15256691 15256712 7 188 1.5 4.0 2.8 1.8 208 chrX 15256504 intergenic not near genes chrX 15256608 intergenic not near genes chrX 15256712 intergenic not near genes chrX_7_15255001 chrX_15255001 RAL-820 1711 chrX 15413049 15413082 chrX 15417350 15417383 Juan 11 4301 1.5 1.0 1.2 5.0 4334 chrX 15413049 intron Cngl - chrX 15415216 intron Cngl - chrX 15417383 intron Cngl - chrX_11_15415001 chrX_15415001 RAL-820 1712 chrX 15506556 15506586 chrX 15506634 15506664 7 77 2.5 3.5 3.0 1.8 108 chrX 15506556 intron Gmap + chrX 15506610 intron Gmap + chrX 15506664 intron Gmap + chrX_7_15505001 chrX_15505001 RAL-820 1713 chrX 15519798 15519829 chrX 15519876 15519894 7 76 2.0 2.5 2.2 2.2 96 chrX 15519798 intron Ac13E - chrX 15519846 intron Ac13E - chrX 15519894 intron Ac13E - chrX_7_15515001 chrX_15515001 RAL-820 1714 chrX 15591183 15591205 chrX 15591259 15591281 6 75 0.0 4.0 2.0 2.0 98 chrX 15591183 intron CG9220 - chrX 15591232 intron CG9220 - chrX 15591281 intron CG9220 - chrX_6_15590001 chrX_15590001 RAL-820 1715 chrX 15681394 15681423 chrX 15681476 15681505 7 82 1.0 1.5 1.2 3.2 111 chrX 15681394 intergenic not near genes chrX 15681450 intergenic not near genes chrX 15681505 intergenic not near genes chrX_7_15680001 chrX_15680001 RAL-820 1716 chrX 16176190 16176221 chrX 16176267 16176298 8 76 2.0 2.5 2.2 2.5 108 chrX 16176190 intergenic not near genes chrX 16176244 intergenic not near genes chrX 16176298 intergenic not near genes chrX_8_16175001 chrX_16175001 RAL-820 1717 chrX 16329435 16329447 chrX 16329515 16329530 4 82 0.0 3.0 1.5 1.6 95 chrX 16329435 intron CG9919 - chrX 16329482 intron CG9919 - chrX 16329530 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-820 1718 chrX 16492656 16492669 chrX 16498233 16498245 mdg3 5 5577 3.0 4.5 3.8 1.0 5589 chrX 16492656 intron para - chrX 16495450 intron para - chrX 16498245 intron para - chrX_5_16495001 chrX_16495001 RAL-820 1719 chrX 16689623 16689654 chrX 16689708 16689739 5 83 2.0 1.5 1.8 1.8 116 chrX 16689623 intron Sep4 - chrX 16689681 intron Sep4 - chrX 16689739 intron Sep4 - chrX_5_16685001 chrX_16685001 RAL-820 1720 chrX 16785293 16785306 chrX 16785397 16785410 7 104 3.0 4.5 3.8 1.5 117 chrX 16785293 3` UTR CG9609 - chrX 16785352 3` UTR CG9609 - chrX 16785410 3` UTR CG9609 - chrX_7_16785001 chrX_16785001 RAL-820 1721 chrX 16821239 16821265 chrX 16821317 16821345 8 80 0.0 2.0 1.0 4.0 106 chrX 16821239 intron CG4829 + chrX 16821292 intron CG4829 + chrX 16821345 intron CG4829 + chrX_8_16820001 chrX_16820001 RAL-820 1722 chrX 16993499 16993513 chrX 16993680 16993694 5 181 4.0 2.5 3.2 1.2 195 chrX 16993499 intron CG45002 - chrX 16993596 intron CG45002 - chrX 16993694 intron CG45002 - chrX_5_16990001 chrX_16990001 RAL-820 1723 chrX 17011966 17011999 chrX 17012047 17012082 7 80 0.5 3.5 2.0 2.3 116 chrX 17011966 intron CG45002 - chrX 17012024 intron CG45002 - chrX 17012082 intron CG45002 - chrX_7_17010001 chrX_17010001 RAL-820 1724 chrX 17149575 17149584 chrX 17154241 17154250 4 4666 11.0 4.5 7.8 0.5 4675 chrX 17149575 intron CG5010 + chrX 17151912 exon xmas-1 - chrX 17154250 intron,3` UTR xmas-1 -,xmas-2 - chrX_4_17150001 chrX_17150001 RAL-820 1725 chrX 17262177 17262195 chrX 17262263 17262274 4 84 2.0 3.5 2.8 1.1 97 chrX 17262177 intron f + chrX 17262226 intron f + chrX 17262274 intron f + chrX_4_17260001 chrX_17260001 RAL-820 1726 chrX 17282877 17282907 chrX 17282955 17282985 5 77 1.0 0.0 0.5 3.3 108 chrX 17282877 intron CG5445 + chrX 17282931 5` UTR CG5445 + chrX 17282985 intron CG5445 + chrX_5_17280001 chrX_17280001 RAL-820 1727 chrX 17290067 17290080 chrX 17290143 17290156 6 76 0.5 1.5 1.0 3.0 89 chrX 17290067 intron,intron CG5445 +,Fim - chrX 17290112 intron,intron CG5445 +,Fim - chrX 17290156 intron,intron CG5445 +,Fim - chrX_6_17290001 chrX_17290001 RAL-820 1728 chrX 17352597 17352618 chrX 17352700 17352721 5 103 0.0 4.0 2.0 1.7 124 chrX 17352597 intergenic not near genes chrX 17352659 intergenic not near genes chrX 17352721 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-820 1729 chrX 17680888 17680924 chrX 17680965 17681001 6 76 1.5 3.5 2.5 1.7 113 chrX 17680888 intron chas - chrX 17680944 intron chas - chrX 17681001 intron chas - chrX_6_17680001 chrX_17680001 RAL-820 1730 chrX 17716588 17716600 chrX 17716675 17716687 4 87 3.0 4.0 3.5 0.9 99 chrX 17716588 intron CG42684 + chrX 17716638 intron CG42684 + chrX 17716687 intron CG42684 + chrX_4_17715001 chrX_17715001 RAL-820 1731 chrX 17792949 17792982 chrX 17796247 17796280 flea 5 3298 2.0 2.0 2.0 1.7 3331 chrX 17792949 intron OdsH + chrX 17794614 intron OdsH + chrX 17796280 intron OdsH + chrX_5_17790001 chrX_17790001 RAL-820 1732 chrX 17846280 17846312 chrX 17846364 17846396 6 84 2.5 1.5 2.0 2.0 116 chrX 17846280 intron Ucp4A + chrX 17846338 intron Ucp4A + chrX 17846396 intron Ucp4A + chrX_6_17845001 chrX_17845001 RAL-820 1733 chrX 17911850 17911878 chrX 17911938 17911966 8 88 0.0 1.5 0.8 4.4 116 chrX 17911850 intron CG6847 + chrX 17911908 intron CG6847 + chrX 17911966 intron CG6847 + chrX_8_17910001 chrX_17910001 RAL-820 1734 chrX 18126605 18126830 chrX 18126728 18126907 5 105 0.5 0.5 0.5 3.3 302 chrX 18126605 intron CG32553 - chrX 18126756 intron CG32553 - chrX 18126907 intron CG32553 - chrX_5_18125001 chrX_18125001 RAL-820 1735 chrX 18194077 18194104 chrX 18194612 18194639 BS 5 535 2.0 3.0 2.5 1.4 562 chrX 18194077 intron Frq2 + chrX 18194358 intron Frq2 + chrX 18194639 intron Frq2 + chrX_5_18190001 chrX_18190001 RAL-820 1736 chrX 18337425 18337453 chrX 18337525 18337553 6 100 1.5 1.5 1.5 2.4 128 chrX 18337425 intron CG6123 - chrX 18337489 intron CG6123 - chrX 18337553 intron CG6123 - chrX_6_18335001 chrX_18335001 RAL-820 1737 chrX 18429496 18429526 chrX 18434806 18434837 Transpac 9 5311 3.0 2.0 2.5 2.6 5341 chrX 18429496 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434837 intergenic not near genes chrX_9_18430001 chrX_18430001 RAL-820 1738 chrX 18515882 18515910 chrX 18515974 18516001 9 92 1.0 4.0 2.5 2.6 119 chrX 18515882 intron,intron Aats-his +,Bx + chrX 18515942 intron,intron Aats-his +,Bx + chrX 18516001 intron,intron Aats-his +,Bx + chrX_9_18515001 chrX_18515001 RAL-820 1739 chrX 18558780 18558802 chrX 18558861 18558883 4 82 1.0 2.0 1.5 1.6 103 chrX 18558780 intron Bx + chrX 18558832 intron Bx + chrX 18558883 intron Bx + chrX_4_18555001 chrX_18555001 RAL-820 1740 chrX 18563685 18563718 chrX 18563787 18563820 6 102 4.0 1.0 2.5 1.7 135 chrX 18563685 intron Bx + chrX 18563752 intron Bx + chrX 18563820 intron Bx + chrX_6_18560001 chrX_18560001 RAL-820 1741 chrX 18574809 18574825 chrX 18574889 18574905 5 80 0.5 0.5 0.5 3.3 96 chrX 18574809 intergenic not near genes chrX 18574857 intergenic not near genes chrX 18574905 intergenic not near genes chrX_5_18570001 chrX_18570001 RAL-820 1742 chrX 18896910 18896942 chrX 18896986 18897018 14 77 1.0 2.0 1.5 5.6 108 chrX 18896910 intergenic CG7349 + chrX 18896964 intergenic CG7349 + chrX 18897018 intergenic CG7349 + chrX_14_18895001 chrX_18895001 RAL-820 1743 chrX 18957084 18957098 chrX 18965747 18965761 roo 4 8663 1.0 0.5 0.8 2.2 8677 chrX 18957084 intron CG43759 + chrX 18961422 intron CG43759 + chrX 18965761 intron CG43759 + chrX_4_18960001 chrX_18960001 RAL-820 1744 chrX 19014370 19014391 chrX 19014448 19014470 4 78 2.5 6.0 4.2 0.8 100 chrX 19014370 intron CG43759 + chrX 19014420 intron CG43759 + chrX 19014470 intron CG43759 + chrX_4_19010001 chrX_19010001 RAL-820 1745 chrX 19059942 19059945 chrX 19060020 19060023 4 78 4.0 8.0 6.0 0.6 81 chrX 19059942 intron CG14190 + chrX 19059982 intron CG14190 + chrX 19060023 intron CG14190 + chrX_4_19055001 chrX_19055001 RAL-820 1746 chrX 19080327 19080348 chrX 19080433 19080454 6 106 3.0 0.5 1.8 2.1 127 chrX 19080327 intergenic not near genes chrX 19080390 intergenic not near genes chrX 19080454 intergenic not near genes chrX_6_19080001 chrX_19080001 RAL-820 1747 chrX 19136554 19136585 chrX 19143474 19143504 412 7 6919 4.5 3.0 3.8 1.5 6950 chrX 19136554 intergenic not near genes chrX 19140029 intergenic not near genes chrX 19143504 3` UTR RhoGAP18B - chrX_7_19140001 chrX_19140001 RAL-820 1748 chrX 19200003 19200029 chrX 19200084 19200111 6 82 3.0 0.0 1.5 2.4 108 chrX 19200003 intron CG7990 - chrX 19200057 intron CG7990 - chrX 19200111 intron CG7990 - chrX_6_19200001 chrX_19200001 RAL-820 1749 chrX 19226175 19226193 chrX 19226385 19226403 7 210 2.0 3.0 2.5 2.0 228 chrX 19226175 intron CG7884 + chrX 19226289 intron CG7884 + chrX 19226403 intron CG7884 + chrX_7_19225001 chrX_19225001 RAL-820 1750 chrX 13057298 13057299 chrX 19242812 19242813 6 6185514 9.5 9.0 9.2 0.6 6185515 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242813 intergenic not near genes chrX_6_16150001 chrX_16150001 RAL-820 1751 chrX 19281000 19281032 chrX 19281129 19281161 8 128 0.0 1.0 0.5 5.3 161 chrX 19281000 intergenic CG8034 - chrX 19281080 intergenic CG8034 - chrX 19281161 intergenic CG8034 - chrX_8_19280001 chrX_19280001 RAL-820 1752 chrX 19357000 19357017 chrX 19358441 19358455 NOF 8 1440 2.5 0.0 1.2 3.6 1455 chrX 19357000 intron kek5 + chrX 19357728 intron kek5 + chrX 19358455 intron kek5 + chrX_8_19355001 chrX_19355001 RAL-820 1753 chrX 19380155 19380182 chrX 19380396 19380423 pogo 6 241 2.0 0.0 1.0 3.0 268 chrX 19380155 intron kek5 + chrX 19380289 intron kek5 + chrX 19380423 intron kek5 + chrX_6_19380001 chrX_19380001 RAL-820 1754 chrX 19593953 19593974 chrX 19594038 19594059 10 85 3.5 2.0 2.8 2.6 106 chrX 19593953 exon CG14205 + chrX 19594006 intron CG14205 + chrX 19594059 intron CG14205 + chrX_10_19590001 chrX_19590001 RAL-820 1755 chrX 19762584 19762617 chrX 19762664 19762697 4 80 1.0 0.5 0.8 2.2 113 chrX 19762584 5` UTR CG12702 - chrX 19762640 5` UTR CG12702 - chrX 19762697 5` UTR CG12702 - chrX_4_19760001 chrX_19760001 RAL-820 1756 chrX 19822830 19822862 chrX 19822996 19823029 6 166 2.0 2.5 2.2 1.9 199 chrX 19822830 intergenic not near genes chrX 19822930 intergenic skpE - chrX 19823029 intergenic skpE - chrX_6_19820001 chrX_19820001 RAL-820 1757 chrX 19881456 19881485 chrX 19881535 19881563 10 78 2.5 2.0 2.2 3.1 107 chrX 19881456 intron Hers + chrX 19881510 intron Hers + chrX 19881563 intron Hers + chrX_10_19880001 chrX_19880001 RAL-820 1758 chrX 19981580 19981587 chrX 19981656 19981660 4 75 1.5 0.0 0.8 2.2 80 chrX 19981580 intergenic not near genes chrX 19981620 intergenic not near genes chrX 19981660 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-820 1759 chrX 19992421 19992433 chrX 19992497 19992509 5 76 4.0 9.0 6.5 0.7 88 chrX 19992421 intergenic not near genes chrX 19992465 intergenic not near genes chrX 19992509 intergenic not near genes chrX_5_19990001 chrX_19990001 RAL-820 1760 chrX 20037622 20037651 chrX 20037701 20037730 9 79 2.0 0.5 1.2 4.1 108 chrX 20037622 intron Dop2R - chrX 20037676 intron Dop2R - chrX 20037730 intron Dop2R - chrX_9_20035001 chrX_20035001 RAL-820 1761 chrX 20041530 20041564 chrX 20041610 20041644 8 77 3.0 1.0 2.0 2.7 114 chrX 20041530 intron Dop2R - chrX 20041587 intron Dop2R - chrX 20041644 intron Dop2R - chrX_8_20040001 chrX_20040001 RAL-820 1762 chrX 20105204 20105227 chrX 20105307 20105330 11 103 17.5 18.5 18.0 0.6 126 chrX 20105204 intergenic not near genes chrX 20105267 intergenic not near genes chrX 20105330 intergenic not near genes chrX_11_20105001 chrX_20105001 RAL-820 1763 chrX 20377325 20377351 chrX 20378792 20378818 hobo 4 1467 3.0 5.5 4.2 0.8 1493 chrX 20377325 intergenic not near genes chrX 20378072 intergenic not near genes chrX 20378818 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-820 1764 chrX 20443173 20443186 chrX 20443249 20443262 4 76 3.5 0.5 2.0 1.3 89 chrX 20443173 exon CG1695 + chrX 20443218 intron CG1695 + chrX 20443262 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-820 1765 chrX 20447124 20447147 chrX 20447205 20447228 4 81 2.5 2.5 2.5 1.1 104 chrX 20447124 intergenic CG42578 + chrX 20447176 intergenic CG42578 + chrX 20447228 intergenic not near genes chrX_4_20445001 chrX_20445001 RAL-820 1766 chrX 20504130 20504155 chrX 20505651 20505669 transib2 8 1520 4.0 2.5 3.2 1.9 1539 chrX 20504130 intron RhoGAP19D - chrX 20504900 intron RhoGAP19D - chrX 20505669 intron RhoGAP19D - chrX_8_20500001 chrX_20500001 RAL-820 1767 chrX 20516992 20516996 chrX 20517099 20517103 4 106 3.5 6.0 4.8 0.7 111 chrX 20516992 exon Tak1 - chrX 20517048 exon Tak1 - chrX 20517103 exon Tak1 - chrX_4_20515001 chrX_20515001 RAL-820 1768 chrX 20528615 20528625 chrX 20528962 20528973 4 348 3.0 5.5 4.2 0.8 358 chrX 20528615 intergenic not near genes chrX 20528794 intergenic not near genes chrX 20528973 intergenic not near genes chrX_4_20525001 chrX_20525001 RAL-820 1769 chrX 20546549 20546552 chrX 20546715 20546717 4 166 3.0 2.0 2.5 1.1 168 chrX 20546549 intron RunxB + chrX 20546633 intron RunxB + chrX 20546717 intron RunxB + chrX_4_20545001 chrX_20545001 RAL-820 1770 chrX 20710410 20710431 chrX 20710487 20710508 7 77 0.0 1.5 0.8 3.9 98 chrX 20710410 intergenic not near genes chrX 20710459 intergenic not near genes chrX 20710508 intergenic not near genes chrX_7_20710001 chrX_20710001 RAL-820 1771 chrX 20940721 20940754 chrX 20942189 20942223 hobo 8 1468 2.5 1.5 2.0 2.7 1502 chrX 20940721 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942223 intergenic not near genes chrX_8_20940001 chrX_20940001 RAL-820 1772 chrX 21042558 21042587 chrX 21045343 21045372 15 2786 20.5 26.0 23.2 0.6 2814 chrX 21042558 exon Mgstl + chrX 21043965 exon,3` UTR Mgstl +,CR44431 - chrX 21045372 intron Cbs + chrX_15_21040001 chrX_21040001 RAL-820 1773 chrX 21067788 21067818 chrX 21067884 21067914 5 96 1.5 1.5 1.5 2.0 126 chrX 21067788 intron bves + chrX 21067851 intron bves + chrX 21067914 intron bves + chrX_5_21065001 chrX_21065001 RAL-820 1774 chrX 21078775 21078779 chrX 21078852 21078857 4 78 2.0 3.5 2.8 1.1 82 chrX 21078775 intron bves + chrX 21078816 intron bves + chrX 21078857 intron bves + chrX_4_21075001 chrX_21075001 RAL-820 1775 chrX 21086131 21086154 chrX 21087160 21087183 jockey 6 1029 4.5 1.0 2.8 1.6 1052 chrX 21086131 intergenic not near genes chrX 21086657 intergenic not near genes chrX 21087183 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-820 1776 chrX 21092657 21092687 chrX 21092735 21092765 12 77 2.5 4.0 3.2 2.9 108 chrX 21092657 intergenic not near genes chrX 21092711 intergenic not near genes chrX 21092765 intergenic not near genes chrX_12_21090001 chrX_21090001 RAL-820 1777 chrX 21250351 21250385 chrX 21250434 21250449 12 80 1.5 4.5 3.0 3.0 98 chrX 21250351 intron,exon CG32521 -,CG1722 - chrX 21250400 intron,exon CG32521 -,CG1722 - chrX 21250449 intron,exon CG32521 -,CG1722 - chrX_12_21250001 chrX_21250001 RAL-820 1778 chrX 21253290 21253303 chrX 21253362 21253379 6 76 2.5 3.0 2.8 1.6 89 chrX 21253290 intron CG32521 - chrX 21253334 intron CG32521 - chrX 21253379 intron CG32521 - chrX_6_21250001 chrX_21250001 RAL-820 1779 chrX 21328116 21328136 chrX 21328227 21328247 4 111 1.5 1.5 1.5 1.6 131 chrX 21328116 3` UTR CG1486 + chrX 21328182 intergenic CG1486 +,tty - chrX 21328247 intergenic CG1486 +,tty - chrX_4_21325001 chrX_21325001 RAL-820 1780 chrX 21410643 21410671 chrX 21410722 21410750 7 79 0.0 1.5 0.8 3.9 107 chrX 21410643 intergenic CR45003 - chrX 21410696 intergenic CR45003 - chrX 21410750 intergenic CR45003 - chrX_7_21410001 chrX_21410001 RAL-820 1781 chrX 21458693 21458733 chrX 21464129 21464169 Ivk 9 5436 0.5 3.5 2.0 3.0 5476 chrX 21458693 intergenic not near genes chrX 21461431 intergenic not near genes chrX 21464169 intergenic not near genes chrX_9_21460001 chrX_21460001 RAL-820 1782 chrX 21668256 21668289 chrX 21668341 21668374 7 85 16.0 12.0 14.0 0.5 118 chrX 21668256 intergenic not near genes chrX 21668315 intergenic not near genes chrX 21668374 intergenic not near genes chrX_7_21665001 chrX_21665001 RAL-820 1783 chrX 22492486 22492511 chrX 22492999 22493024 4 512 1.0 1.5 1.2 1.8 538 chrX 22492486 intron l(1)G0196 + chrX 22492755 intron l(1)G0196 + chrX 22493024 intron l(1)G0196 + chrX_4_22490001 chrX_22490001 RAL-820 1784 chrX 22522643 22522660 chrX 22525463 22525480 NOF 6 2820 3.0 0.0 1.5 2.4 2837 chrX 22522643 intron CG17600 + chrX 22524062 intron CG17600 + chrX 22525480 intron CG17600 + chrX_6_22520001 chrX_22520001 RAL-820 1785 chrX 22584335 22584366 chrX 22584426 22584457 9 91 1.0 0.5 0.8 5.0 122 chrX 22584335 intron Cda4 - chrX 22584396 intron Cda4 - chrX 22584457 intron Cda4 - chrX_9_22580001 chrX_22580001 RAL-820 1786 chrX 22620505 22620513 chrX 22626773 22626781 297 4 6268 1.0 1.0 1.0 2.0 6276 chrX 22620505 intron Cda4 - chrX 22623643 intron Cda4 - chrX 22626781 intron Cda4 - chrX_4_22620001 chrX_22620001 RAL-820 1787 chrX 22660570 22660589 chrX 22660654 22660673 5 84 1.5 0.0 0.8 2.8 103 chrX 22660570 intron CR44997 + chrX 22660622 intron CR44997 + chrX 22660673 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-820 1788 chrX 22697500 22697521 chrX 22701796 22701818 Juan 5 4297 3.5 4.5 4.0 1.0 4318 chrX 22697500 intron CR44997 + chrX 22699659 intron CR44997 + chrX 22701818 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-820 1789 chrX 22824229 22824445 chrX 22824355 22824578 10 130 2.0 1.0 1.5 4.0 349 chrX 22824229 intergenic fog - chrX 22824404 3` UTR fog - chrX 22824578 3` UTR fog - chrX_10_22820001 chrX_22820001 RAL-820 1790 chrX 22867983 22868001 chrX 22868097 22868115 7 114 3.5 0.0 1.8 2.5 132 chrX 22867983 exon CG42346 + chrX 22868049 intron CG42346 + chrX 22868115 intron CG42346 + chrX_7_22865001 chrX_22865001 RAL-820 1791 chrX 22992403 22992417 chrX 22992534 22992548 6 131 2.5 2.5 2.5 1.7 145 chrX 22992403 intron,intron stnA -,stnB - chrX 22992476 intron,intron stnA -,stnB - chrX 22992548 intron,intron stnA -,stnB - chrX_6_22990001 chrX_22990001 RAL-820 1792 chrX 22996317 22996338 chrX 23003549 23003570 roo 8 7232 1.0 2.0 1.5 3.2 7253 chrX 22996317 intron,intron stnA -,stnB - chrX 22999944 intron,intron stnA -,stnB - chrX 23003570 intron,intron stnA -,stnB - chrX_8_22995001 chrX_22995001 RAL-820 1793 chrX 23036392 23036409 chrX 23037793 23037809 pogo 5 1400 1.5 1.0 1.2 2.3 1417 chrX 23036392 intron CG12061 + chrX 23037100 intron CG12061 + chrX 23037809 intron CG12061 + chrX_5_23035001 chrX_23035001 RAL-820 1794 chrY 975603 975810 chrY 975720 975965 5 102 88.0 85.0 86.5 0.1 362 chrY 975603 intergenic not near genes chrY 975784 intergenic not near genes chrY 975965 intergenic not near genes chrY_5_975001 chrY_975001 RAL-820