SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 46324 46383 chr2L 46427 46486 43 101 10.5 8.0 9.2 4.2 162 chr2L 46324 intron Cda5 - chr2L 46405 intron Cda5 - chr2L 46486 intron Cda5 - chr2L_43_45001 chr2L_45001 RAL-819 2 chr2L 47440 47483 chr2L 52570 52608 jockey 28 5128 22.5 14.5 18.5 1.4 5168 chr2L 47440 intron Cda5 - chr2L 50024 intron Cda5 - chr2L 52608 intron Cda5 - chr2L_28_50001 chr2L_50001 RAL-819 3 chr2L 89690 89748 chr2L 89792 89850 34 100 14.5 8.0 11.2 2.8 160 chr2L 89690 intergenic not near genes chr2L 89770 intergenic not near genes chr2L 89850 intergenic not near genes chr2L_34_85001 chr2L_85001 RAL-819 4 chr2L 172049 172084 chr2L 172155 172190 12 106 4.5 6.0 5.2 1.9 141 chr2L 172049 intron spen + chr2L 172120 intron spen + chr2L 172190 intron spen + chr2L_12_170001 chr2L_170001 RAL-819 5 chr2L 179431 179490 chr2L 179539 179598 37 106 4.5 10.0 7.2 4.5 167 chr2L 179431 intron spen + chr2L 179514 intron spen + chr2L 179598 intron spen + chr2L_37_175001 chr2L_175001 RAL-819 6 chr2L 263274 263330 chr2L 263445 263501 34 170 2.5 20.0 11.2 2.8 227 chr2L 263274 intron,3` UTR CG3645 -,CG17075 - chr2L 263388 intron,3` UTR CG3645 -,CG17075 - chr2L 263501 intron,3` UTR CG3645 -,CG17075 - chr2L_34_260001 chr2L_260001 RAL-819 7 chr2L 297660 297719 chr2L 297785 297842 41 121 9.0 12.0 10.5 3.6 182 chr2L 297660 intergenic Hop +,Pi3K21B + chr2L 297751 intergenic Pi3K21B +,Hop + chr2L 297842 intergenic Pi3K21B +,Hop + chr2L_41_295001 chr2L_295001 RAL-819 8 chr2L 314120 314152 chr2L 314206 314254 18 98 8.5 10.0 9.2 1.8 134 chr2L 314120 intron Plc21C + chr2L 314187 intron Plc21C + chr2L 314254 intron Plc21C + chr2L_18_310001 chr2L_310001 RAL-819 9 chr2L 323429 323486 chr2L 323532 323589 57 96 13.5 10.5 12.0 4.4 160 chr2L 323429 intron Plc21C + chr2L 323509 intron Plc21C + chr2L 323589 intron Plc21C + chr2L_57_320001 chr2L_320001 RAL-819 10 chr2L 325114 325146 chr2L 325211 325248 37 97 24.0 21.5 22.8 1.6 134 chr2L 325114 intron Plc21C + chr2L 325181 intron Plc21C + chr2L 325248 intron Plc21C + chr2L_37_325001 chr2L_325001 RAL-819 11 chr2L 347863 347919 chr2L 355388 355438 blood 38 7522 11.0 10.5 10.8 3.2 7575 chr2L 347863 3` UTR Plc21C + chr2L 351650 intron Plc21C + chr2L 355438 3` UTR Plc21C + chr2L_38_350001 chr2L_350001 RAL-819 12 chr2L 371417 371459 chr2L 371521 371563 26 104 9.5 20.0 14.8 1.6 146 chr2L 371417 intergenic not near genes chr2L 371490 intergenic not near genes chr2L 371563 intergenic not near genes chr2L_26_370001 chr2L_370001 RAL-819 13 chr2L 407922 407973 chr2L 408028 408079 39 103 11.0 13.0 12.0 3.0 157 chr2L 407922 3` UTR RpI135 + chr2L 408000 intergenic AP-2alpha -,RpI135 + chr2L 408079 3` UTR AP-2alpha - chr2L_39_405001 chr2L_405001 RAL-819 14 chr2L 489509 489568 chr2L 489619 489639 46 103 12.5 13.0 12.8 3.3 130 chr2L 489509 intron ush + chr2L 489574 intron ush + chr2L 489639 intron ush + chr2L_46_485001 chr2L_485001 RAL-819 15 chr2L 593469 593489 chr2L 593574 593594 16 104 20.5 12.5 16.5 0.9 125 chr2L 593469 intron Gsc - chr2L 593532 intron Gsc - chr2L 593594 exon Gsc - chr2L_16_590001 chr2L_590001 RAL-819 16 chr2L 593490 593516 chr2L 593563 593590 13 88 9.5 9.5 9.5 1.2 100 chr2L 593490 intron Gsc - chr2L 593540 intron Gsc - chr2L 593590 exon Gsc - chr2L_13_590001 chr2L_590001 RAL-819 17 chr2L 630282 630335 chr2L 630399 630450 52 113 6.5 5.5 6.0 7.4 168 chr2L 630282 intergenic not near genes chr2L 630366 intergenic not near genes chr2L 630450 intergenic not near genes chr2L_52_630001 chr2L_630001 RAL-819 18 chr2L 686914 686947 chr2L 695964 696008 roo 39 9063 13.5 15.5 14.5 2.5 9094 chr2L 686914 intron ds - chr2L 691461 intron ds - chr2L 696008 intron ds - chr2L_39_690001 chr2L_690001 RAL-819 19 chr2L 746561 746572 chr2L 746662 746673 7 101 21.0 20.0 20.5 0.3 112 chr2L 746561 intergenic not near genes chr2L 746617 intergenic not near genes chr2L 746673 intergenic not near genes chr2L_7_745001 chr2L_745001 RAL-819 20 chr2L 763571 763604 chr2L 763672 763705 30 99 17.5 11.5 14.5 1.9 134 chr2L 763571 intergenic not near genes chr2L 763638 intergenic not near genes chr2L 763705 intergenic not near genes chr2L_30_760001 chr2L_760001 RAL-819 21 chr2L 763606 763630 chr2L 763670 763703 26 90 12.0 12.5 12.2 2.0 97 chr2L 763606 intergenic not near genes chr2L 763654 intergenic not near genes chr2L 763703 intergenic not near genes chr2L_26_760001 chr2L_760001 RAL-819 22 chr2L 770444 770449 chr2L 772250 772254 Bari1 4 1806 31.5 19.5 25.5 0.2 1810 chr2L 770444 intergenic not near genes chr2L 771349 intergenic not near genes chr2L 772254 intergenic CR44614 + chr2L_4_770001 chr2L_770001 RAL-819 23 chr2L 770457 770459 chr2L 772248 772265 Bari1 5 1801 28.0 19.0 23.5 0.2 1808 chr2L 770457 intergenic not near genes chr2L 771361 intergenic not near genes chr2L 772265 intergenic CR44614 + chr2L_5_770001 chr2L_770001 RAL-819 24 chr2L 770460 770494 chr2L 772244 772269 Bari1 48 1800 10.5 16.5 13.5 3.3 1809 chr2L 770460 intergenic not near genes chr2L 771364 intergenic not near genes chr2L 772269 intergenic CR44614 + chr2L_48_770001 chr2L_770001 RAL-819 25 chr2L 773591 773688 chr2L 776515 776612 4 2922 16.5 10.0 13.2 0.3 3021 chr2L 773591 5` UTR CG12506 + chr2L 775102 intergenic not near genes chr2L 776612 exon CG13946 + chr2L_4_775001 chr2L_775001 RAL-819 26 chr2L 791430 791472 chr2L 791548 791569 27 116 6.0 13.5 9.8 2.5 139 chr2L 791430 intergenic not near genes chr2L 791500 intergenic not near genes chr2L 791569 intergenic not near genes chr2L_27_790001 chr2L_790001 RAL-819 27 chr2L 795899 795901 chr2L 796065 796068 5 166 25.0 16.0 20.5 0.2 169 chr2L 795899 intergenic not near genes chr2L 795984 intergenic not near genes chr2L 796068 intergenic not near genes chr2L_5_795001 chr2L_795001 RAL-819 28 chr2L 795902 795949 chr2L 796064 796116 32 166 12.5 16.0 14.2 2.1 214 chr2L 795902 intergenic not near genes chr2L 796009 intergenic not near genes chr2L 796116 intergenic not near genes chr2L_32_795001 chr2L_795001 RAL-819 29 chr2L 877819 877823 chr2L 877925 877929 5 106 38.5 15.0 26.8 0.2 110 chr2L 877819 3` UTR,exon CG15824 -,ninaA + chr2L 877874 3` UTR,intron CG15824 -,ninaA + chr2L 877929 3` UTR,intron CG15824 -,ninaA + chr2L_5_875001 chr2L_875001 RAL-819 30 chr2L 877824 877856 chr2L 877924 877962 19 99 23.5 14.5 19.0 0.9 138 chr2L 877824 3` UTR,exon CG15824 -,ninaA + chr2L 877893 3` UTR,intron CG15824 -,ninaA + chr2L 877962 3` UTR,intron CG15824 -,ninaA + chr2L_19_875001 chr2L_875001 RAL-819 31 chr2L 877860 877878 chr2L 877921 877972 16 99 17.5 14.5 16.0 0.9 112 chr2L 877860 3` UTR,exon CG15824 -,ninaA + chr2L 877916 3` UTR,intron CG15824 -,ninaA + chr2L 877972 3` UTR,exon CG15824 -,ninaA + chr2L_16_875001 chr2L_875001 RAL-819 32 chr2L 922439 922493 chr2L 922545 922599 40 105 8.5 13.0 10.8 3.4 160 chr2L 922439 intergenic CG4341 + chr2L 922519 intergenic CG4341 + chr2L 922599 intergenic CG4341 + chr2L_40_920001 chr2L_920001 RAL-819 33 chr2L 923529 923573 chr2L 923688 923732 36 162 17.0 15.5 16.2 2.1 203 chr2L 923529 intron CG4341 + chr2L 923630 intron CG4341 + chr2L 923732 intron CG4341 + chr2L_36_920001 chr2L_920001 RAL-819 34 chr2L 955987 955994 chr2L 956098 956115 8 118 0.0 32.5 16.2 0.5 128 chr2L 955987 intron CG4341 + chr2L 956051 intron CG4341 + chr2L 956115 intron CG4341 + chr2L_8_955001 chr2L_955001 RAL-819 35 chr2L 964531 964574 chr2L 964640 964683 44 107 7.5 16.0 11.8 3.4 152 chr2L 964531 intergenic not near genes chr2L 964607 intergenic not near genes chr2L 964683 intergenic not near genes chr2L_44_960001 chr2L_960001 RAL-819 36 chr2L 976853 976913 chr2L 984514 984574 roo 31 7660 13.0 16.0 14.5 2.0 7721 chr2L 976853 intergenic not near genes chr2L 980714 intergenic not near genes chr2L 984574 intergenic not near genes chr2L_31_980001 chr2L_980001 RAL-819 37 chr2L 996704 996749 chr2L 1005824 1005869 roo 30 9119 13.0 16.5 14.8 1.9 9165 chr2L 996704 intergenic not near genes chr2L 1001286 intergenic not near genes chr2L 1005869 intergenic not near genes chr2L_30_1000001 chr2L_1000001 RAL-819 38 chr2L 1025094 1025119 chr2L 1025199 1025204 4 96 21.0 19.5 20.2 0.2 110 chr2L 1025094 intron IA-2 - chr2L 1025149 intron IA-2 - chr2L 1025204 intron IA-2 - chr2L_4_1025001 chr2L_1025001 RAL-819 39 chr2L 1027601 1027616 chr2L 1027704 1027719 14 103 9.5 10.5 10.0 1.3 118 chr2L 1027601 intron IA-2 - chr2L 1027660 intron IA-2 - chr2L 1027719 intron IA-2 - chr2L_14_1025001 chr2L_1025001 RAL-819 40 chr2L 1028840 1028873 chr2L 1028940 1028998 34 109 10.0 5.0 7.5 4.0 158 chr2L 1028840 intron IA-2 - chr2L 1028919 intron IA-2 - chr2L 1028998 intron IA-2 - chr2L_34_1025001 chr2L_1025001 RAL-819 41 chr2L 1035536 1035550 chr2L 1035638 1035652 12 102 37.0 10.0 23.5 0.5 116 chr2L 1035536 intron IA-2 - chr2L 1035594 intron IA-2 - chr2L 1035652 intron IA-2 - chr2L_12_1035001 chr2L_1035001 RAL-819 42 chr2L 1035555 1035594 chr2L 1035636 1035696 26 100 11.0 10.5 10.8 2.2 141 chr2L 1035555 intron IA-2 - chr2L 1035626 intron IA-2 - chr2L 1035696 intron IA-2 - chr2L_26_1035001 chr2L_1035001 RAL-819 43 chr2L 1036435 1036476 chr2L 1036549 1036588 25 110 16.0 12.0 14.0 1.7 153 chr2L 1036435 intron IA-2 - chr2L 1036512 intron IA-2 - chr2L 1036588 intron IA-2 - chr2L_25_1035001 chr2L_1035001 RAL-819 44 chr2L 1042328 1042352 chr2L 1042497 1042516 19 164 25.0 1.0 13.0 1.4 188 chr2L 1042328 intron IA-2 - chr2L 1042422 intron IA-2 - chr2L 1042516 intron IA-2 - chr2L_19_1040001 chr2L_1040001 RAL-819 45 chr2L 1042358 1042608 chr2L 1042496 1042710 26 121 10.0 1.0 5.5 4.0 352 chr2L 1042358 intron IA-2 - chr2L 1042534 intron IA-2 - chr2L 1042710 intron IA-2 - chr2L_26_1040001 chr2L_1040001 RAL-819 46 chr2L 1094224 1094273 chr2L 1094325 1094369 42 100 8.0 0.0 4.0 8.4 145 chr2L 1094224 intron CG4629 - chr2L 1094296 intron CG4629 - chr2L 1094369 intron CG4629 - chr2L_42_1090001 chr2L_1090001 RAL-819 47 chr2L 1156833 1156887 chr2L 1156963 1157016 26 126 13.0 12.5 12.8 1.9 183 chr2L 1156833 intron capt - chr2L 1156924 intron capt - chr2L 1157016 intron capt - chr2L_26_1155001 chr2L_1155001 RAL-819 48 chr2L 1199860 1199866 chr2L 1199993 1199999 4 133 0.0 28.0 14.0 0.3 139 chr2L 1199860 3` UTR CG43348 + chr2L 1199930 intergenic CG43348 +,CG43349 + chr2L 1199999 intergenic CG43348 +,CG43349 + chr2L_4_1195001 chr2L_1195001 RAL-819 49 chr2L 1220109 1220116 chr2L 1227600 1227607 blood 8 7491 35.0 9.0 22.0 0.3 7498 chr2L 1220109 intron CG42329 + chr2L 1223858 intron CG42329 + chr2L 1227607 intron CG42329 + chr2L_8_1220001 chr2L_1220001 RAL-819 50 chr2L 1220117 1220162 chr2L 1227599 1227653 blood 32 7490 12.0 9.0 10.5 2.8 7536 chr2L 1220117 intron CG42329 + chr2L 1223885 intron CG42329 + chr2L 1227653 intron CG42329 + chr2L_32_1220001 chr2L_1220001 RAL-819 51 chr2L 1237959 1238004 chr2L 1238068 1238102 40 107 10.5 10.0 10.2 3.6 143 chr2L 1237959 intergenic not near genes chr2L 1238030 intergenic not near genes chr2L 1238102 intergenic not near genes chr2L_40_1235001 chr2L_1235001 RAL-819 52 chr2L 1254376 1254386 chr2L 1254479 1254489 8 103 5.5 35.0 20.2 0.4 113 chr2L 1254376 intergenic not near genes chr2L 1254432 intergenic not near genes chr2L 1254489 intergenic not near genes chr2L_8_1250001 chr2L_1250001 RAL-819 53 chr2L 1261135 1261260 chr2L 1261242 1261347 33 104 0.0 0.0 0.0 33.0 212 chr2L 1261135 intron robo3 + chr2L 1261241 intron robo3 + chr2L 1261347 intron robo3 + chr2L_33_1260001 chr2L_1260001 RAL-819 54 chr2L 1287260 1287319 chr2L 1287361 1287420 59 98 9.5 11.0 10.2 5.3 160 chr2L 1287260 intron robo3 + chr2L 1287340 intron robo3 + chr2L 1287420 intron robo3 + chr2L_59_1285001 chr2L_1285001 RAL-819 55 chr2L 1301750 1301782 chr2L 1302312 1302346 gypsy 4 561 0.0 19.0 9.5 0.4 596 chr2L 1301750 intergenic not near genes chr2L 1302048 intergenic not near genes chr2L 1302346 intergenic not near genes chr2L_4_1300001 chr2L_1300001 RAL-819 56 chr2L 1357862 1357911 chr2L 1357976 1358018 29 110 11.0 8.0 9.5 2.8 156 chr2L 1357862 intergenic not near genes chr2L 1357940 intergenic not near genes chr2L 1358018 intergenic not near genes chr2L_29_1355001 chr2L_1355001 RAL-819 57 chr2L 1450673 1450728 chr2L 1450783 1450838 52 109 12.0 7.5 9.8 4.8 165 chr2L 1450673 intergenic not near genes chr2L 1450756 intergenic not near genes chr2L 1450838 intergenic not near genes chr2L_52_1450001 chr2L_1450001 RAL-819 58 chr2L 1464133 1464177 chr2L 1464390 1464434 43 255 14.0 11.5 12.8 3.1 301 chr2L 1464133 intergenic not near genes chr2L 1464284 intergenic not near genes chr2L 1464434 intergenic not near genes chr2L_43_1460001 chr2L_1460001 RAL-819 59 chr2L 1570670 1570720 chr2L 1573567 1573567 F-element 36 2895 15.0 12.0 13.5 2.5 2897 chr2L 1570670 intron haf + chr2L 1572118 intron haf + chr2L 1573567 intron haf + chr2L_36_1570001 chr2L_1570001 RAL-819 60 chr2L 1591837 1591895 chr2L 1591946 1591999 31 104 9.5 5.5 7.5 3.6 162 chr2L 1591837 intron haf + chr2L 1591918 intron haf + chr2L 1591999 intron haf + chr2L_31_1590001 chr2L_1590001 RAL-819 61 chr2L 1634742 1634763 chr2L 1634852 1634873 17 109 30.5 25.0 27.8 0.6 131 chr2L 1634742 intergenic not near genes chr2L 1634808 intergenic not near genes chr2L 1634873 intergenic not near genes chr2L_17_1630001 chr2L_1630001 RAL-819 62 chr2L 1655427 1655479 chr2L 1655533 1655585 32 102 11.5 12.5 12.0 2.5 158 chr2L 1655427 intron chinmo + chr2L 1655506 intron chinmo + chr2L 1655585 intron chinmo + chr2L_32_1655001 chr2L_1655001 RAL-819 63 chr2L 1661996 1662023 chr2L 1662106 1662133 21 110 16.5 1.0 8.8 2.1 137 chr2L 1661996 intron chinmo + chr2L 1662064 intron chinmo + chr2L 1662133 intron chinmo + chr2L_21_1660001 chr2L_1660001 RAL-819 64 chr2L 1678932 1679004 chr2L 1686440 1686494 blood 36 7500 0.5 18.0 9.2 3.5 7562 chr2L 1678932 intron chinmo + chr2L 1682713 intron chinmo + chr2L 1686494 intron chinmo + chr2L_36_1680001 chr2L_1680001 RAL-819 65 chr2L 1711332 1711389 chr2L 1711678 1711703 mdg3 39 344 11.5 15.0 13.2 2.7 371 chr2L 1711332 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711518 3` UTR frtz - chr2L 1711703 3` UTR frtz - chr2L_39_1710001 chr2L_1710001 RAL-819 66 chr2L 1721812 1721818 chr2L 1721921 1721927 5 109 0.5 9.0 4.8 0.9 115 chr2L 1721812 intron Rim2 - chr2L 1721870 intron Rim2 - chr2L 1721927 intron Rim2 - chr2L_5_1720001 chr2L_1720001 RAL-819 67 chr2L 1721819 1721850 chr2L 1721920 1721930 18 106 0.5 8.5 4.5 3.3 111 chr2L 1721819 intron Rim2 - chr2L 1721874 intron Rim2 - chr2L 1721930 intron Rim2 - chr2L_18_1720001 chr2L_1720001 RAL-819 68 chr2L 1724796 1724840 chr2L 1724887 1724894 33 101 9.0 11.0 10.0 3.0 98 chr2L 1724796 3` UTR Eno - chr2L 1724845 3` UTR Eno - chr2L 1724894 3` UTR Eno - chr2L_33_1720001 chr2L_1720001 RAL-819 69 chr2L 1744277 1744307 chr2L 1744546 1744580 13 269 10.0 21.0 15.5 0.8 303 chr2L 1744277 intron CG17646 + chr2L 1744428 intron CG17646 + chr2L 1744580 intron CG17646 + chr2L_13_1740001 chr2L_1740001 RAL-819 70 chr2L 1825218 1825276 chr2L 1825406 1825452 46 184 13.0 20.5 16.8 2.6 234 chr2L 1825218 exon CG31664 - chr2L 1825335 exon CG31664 - chr2L 1825452 exon CG31664 - chr2L_46_1825001 chr2L_1825001 RAL-819 71 chr2L 1845291 1845305 chr2L 1845712 1845716 5 419 29.0 12.5 20.8 0.2 425 chr2L 1845291 intron wry + chr2L 1845504 intron wry + chr2L 1845716 intron wry + chr2L_5_1845001 chr2L_1845001 RAL-819 72 chr2L 1845306 1845344 chr2L 1845710 1845766 29 412 9.5 12.0 10.8 2.5 460 chr2L 1845306 intron wry + chr2L 1845536 intron wry + chr2L 1845766 intron wry + chr2L_29_1845001 chr2L_1845001 RAL-819 73 chr2L 1883402 1883447 chr2L 1883999 1884052 28 602 5.0 7.5 6.2 3.9 650 chr2L 1883402 intron CG15358 - chr2L 1883727 intron CG15358 - chr2L 1884052 exon CG15358 - chr2L_28_1880001 chr2L_1880001 RAL-819 74 chr2L 1924399 1924443 chr2L 1924506 1924535 12 102 8.0 7.5 7.8 1.4 136 chr2L 1924399 intron CG7337 + chr2L 1924467 intron CG7337 + chr2L 1924535 intron CG7337 + chr2L_12_1920001 chr2L_1920001 RAL-819 75 chr2L 1924446 1924452 chr2L 1924503 1924565 25 82 6.0 6.0 6.0 3.6 119 chr2L 1924446 intron CG7337 + chr2L 1924506 intron CG7337 + chr2L 1924565 intron CG7337 + chr2L_25_1920001 chr2L_1920001 RAL-819 76 chr2L 1957902 1957956 chr2L 1958007 1958062 27 106 16.0 11.0 13.5 1.9 160 chr2L 1957902 intron erm - chr2L 1957982 intron erm - chr2L 1958062 intron erm - chr2L_27_1955001 chr2L_1955001 RAL-819 77 chr2L 2007840 2007873 chr2L 2007973 2008006 19 133 10.5 18.5 14.5 1.2 166 chr2L 2007840 intergenic CR45712 + chr2L 2007923 intergenic CR45712 +,Nplp4 + chr2L 2008006 intergenic CR45712 +,Nplp4 + chr2L_19_2005001 chr2L_2005001 RAL-819 78 chr2L 2073333 2073355 chr2L 2073434 2073457 7 103 15.5 33.5 24.5 0.3 124 chr2L 2073333 intron dpr3 - chr2L 2073395 intron dpr3 - chr2L 2073457 intron dpr3 - chr2L_7_2070001 chr2L_2070001 RAL-819 79 chr2L 2073942 2073994 chr2L 2074055 2074107 21 110 10.5 7.0 8.8 2.1 165 chr2L 2073942 intron dpr3 - chr2L 2074024 intron dpr3 - chr2L 2074107 intron dpr3 - chr2L_21_2070001 chr2L_2070001 RAL-819 80 chr2L 2100377 2100392 chr2L 2109547 2109552 roo 12 9170 19.5 28.5 24.0 0.5 9175 chr2L 2100377 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109552 intron dpr3 - chr2L_12_2100001 chr2L_2100001 RAL-819 81 chr2L 2100393 2100402 chr2L 2109546 2109552 roo 6 9164 16.0 28.0 22.0 0.3 9159 chr2L 2100393 intron dpr3 - chr2L 2104972 intron dpr3 - chr2L 2109552 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-819 82 chr2L 2100403 2100408 chr2L 2109544 2109544 roo 7 9152 12.0 27.0 19.5 0.3 9141 chr2L 2100403 intron dpr3 - chr2L 2104974 intron dpr3 - chr2L 2109544 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-819 83 chr2L 2112088 2112145 chr2L 2119773 2119792 opus 35 7670 11.5 21.0 16.2 2.0 7704 chr2L 2112088 intergenic not near genes chr2L 2115940 intergenic not near genes chr2L 2119792 intergenic not near genes chr2L_35_2115001 chr2L_2115001 RAL-819 84 chr2L 2134174 2134226 chr2L 2134327 2134379 36 151 9.0 13.5 11.2 3.0 205 chr2L 2134174 intron GlyP + chr2L 2134276 intron GlyP + chr2L 2134379 intron GlyP + chr2L_36_2130001 chr2L_2130001 RAL-819 85 chr2L 2260780 2260835 chr2L 2260891 2260941 36 107 13.5 10.5 12.0 2.8 161 chr2L 2260780 intergenic not near genes chr2L 2260860 intergenic not near genes chr2L 2260941 intergenic not near genes chr2L_36_2260001 chr2L_2260001 RAL-819 86 chr2L 2294040 2294075 chr2L 2299246 2299294 copia 25 5222 5.5 15.0 10.2 2.2 5254 chr2L 2294040 intergenic not near genes chr2L 2296667 intergenic not near genes chr2L 2299294 intergenic not near genes chr2L_25_2295001 chr2L_2295001 RAL-819 87 chr2L 2317096 2317132 chr2L 2317292 2317328 13 196 62.5 59.5 61.0 0.2 232 chr2L 2317096 intron,intron CG9967 -,eys + chr2L 2317212 intron,intron CG9967 -,eys + chr2L 2317328 intron,intron CG9967 -,eys + chr2L_13_2315001 chr2L_2315001 RAL-819 88 chr2L 2372338 2372401 chr2L 2372449 2372506 11 110 0.0 9.5 4.8 1.9 168 chr2L 2372338 intergenic CG3609 - chr2L 2372422 intergenic CG3609 - chr2L 2372506 3` UTR CG3609 - chr2L_11_2370001 chr2L_2370001 RAL-819 89 chr2L 2504203 2504236 chr2L 2504306 2504327 31 100 4.0 14.0 9.0 3.1 124 chr2L 2504203 intergenic not near genes chr2L 2504265 intergenic not near genes chr2L 2504327 intergenic not near genes chr2L_31_2500001 chr2L_2500001 RAL-819 90 chr2L 2547961 2548013 chr2L 2549144 2549196 32 1185 15.0 110.5 62.8 0.5 1235 chr2L 2547961 intergenic not near genes chr2L 2548578 intergenic not near genes chr2L 2549196 intergenic not near genes chr2L_32_2545001 chr2L_2545001 RAL-819 91 chr2L 2557199 2557203 chr2L 2557300 2557304 4 101 12.0 15.0 13.5 0.3 105 chr2L 2557199 intergenic not near genes chr2L 2557252 intergenic not near genes chr2L 2557304 intergenic not near genes chr2L_4_2555001 chr2L_2555001 RAL-819 92 chr2L 2557205 2557216 chr2L 2557297 2557317 10 100 6.0 14.5 10.2 0.9 112 chr2L 2557205 intergenic not near genes chr2L 2557261 intergenic not near genes chr2L 2557317 intergenic not near genes chr2L_10_2555001 chr2L_2555001 RAL-819 93 chr2L 2563362 2563379 chr2L 2563464 2563482 6 102 24.5 19.0 21.8 0.3 120 chr2L 2563362 exon Cyp309a1 - chr2L 2563422 intron Cyp309a1 - chr2L 2563482 intron Cyp309a1 - chr2L_6_2560001 chr2L_2560001 RAL-819 94 chr2L 2565530 2565563 chr2L 2571628 2571661 297 28 6097 12.0 21.5 16.8 1.6 6131 chr2L 2565530 exon Cyp309a2 - chr2L 2568596 intron Cyp309a2 - chr2L 2571661 exon Cyp309a2 - chr2L_28_2565001 chr2L_2565001 RAL-819 95 chr2L 2618010 2618069 chr2L 2618114 2618172 31 102 10.5 11.5 11.0 2.6 162 chr2L 2618010 intergenic not near genes chr2L 2618091 intergenic not near genes chr2L 2618172 intergenic not near genes chr2L_31_2615001 chr2L_2615001 RAL-819 96 chr2L 2656089 2656146 chr2L 2656211 2656243 55 119 12.0 18.0 15.0 3.4 154 chr2L 2656089 exon Prosbeta4R2 + chr2L 2656166 3` UTR Prosbeta4R2 + chr2L 2656243 3` UTR Prosbeta4R2 + chr2L_55_2655001 chr2L_2655001 RAL-819 97 chr2L 2661181 2661204 chr2L 2663044 2663067 I-element 11 1859 18.5 21.5 20.0 0.5 1886 chr2L 2661181 intergenic not near genes chr2L 2662124 intergenic not near genes chr2L 2663067 intergenic not near genes chr2L_11_2660001 chr2L_2660001 RAL-819 98 chr2L 2661206 2661218 chr2L 2663039 2663054 I-element 7 1847 12.5 19.5 16.0 0.4 1848 chr2L 2661206 intergenic not near genes chr2L 2662130 intergenic not near genes chr2L 2663054 intergenic not near genes chr2L_7_2660001 chr2L_2660001 RAL-819 99 chr2L 2661221 2661233 chr2L 2663034 2663051 I-element 20 1838 7.0 17.0 12.0 1.5 1830 chr2L 2661221 intergenic not near genes chr2L 2662136 intergenic not near genes chr2L 2663051 intergenic not near genes chr2L_20_2660001 chr2L_2660001 RAL-819 100 chr2L 2667598 2667658 chr2L 2667702 2667762 44 102 18.0 17.0 17.5 2.4 164 chr2L 2667598 intergenic not near genes chr2L 2667680 intergenic not near genes chr2L 2667762 intergenic not near genes chr2L_44_2665001 chr2L_2665001 RAL-819 101 chr2L 2698843 2698895 chr2L 2698952 2699007 48 108 2.0 10.0 6.0 6.9 164 chr2L 2698843 intron CG31690 + chr2L 2698925 intron CG31690 + chr2L 2699007 intron CG31690 + chr2L_48_2695001 chr2L_2695001 RAL-819 102 chr2L 2724379 2724439 chr2L 2724480 2724540 24 100 9.5 14.0 11.8 1.9 161 chr2L 2724379 intergenic not near genes chr2L 2724460 intergenic not near genes chr2L 2724540 intergenic not near genes chr2L_24_2720001 chr2L_2720001 RAL-819 103 chr2L 2772585 2772626 chr2L 2779194 2779214 297 29 6603 19.5 22.0 20.8 1.3 6629 chr2L 2772585 3` UTR Syt1 - chr2L 2775900 intron Syt1 - chr2L 2779214 3` UTR Syt1 - chr2L_29_2775001 chr2L_2775001 RAL-819 104 chr2L 2800583 2800608 chr2L 2800690 2800716 11 108 10.5 0.0 5.2 1.8 133 chr2L 2800583 intergenic not near genes chr2L 2800650 intergenic not near genes chr2L 2800716 intergenic not near genes chr2L_11_2800001 chr2L_2800001 RAL-819 105 chr2L 2826528 2826574 chr2L 2826629 2826684 29 110 4.5 10.0 7.2 3.5 156 chr2L 2826528 intron Duox - chr2L 2826606 intron Duox - chr2L 2826684 intron Duox - chr2L_29_2825001 chr2L_2825001 RAL-819 106 chr2L 2830393 2830423 chr2L 2830548 2830578 17 155 10.5 11.0 10.8 1.4 185 chr2L 2830393 intergenic Duox - chr2L 2830486 intergenic Duox - chr2L 2830578 intergenic Duox - chr2L_17_2830001 chr2L_2830001 RAL-819 107 chr2L 2885347 2885397 chr2L 2885449 2885499 48 101 10.0 13.5 11.8 3.8 152 chr2L 2885347 intron NTPase - chr2L 2885423 intron NTPase - chr2L 2885499 intron NTPase - chr2L_48_2885001 chr2L_2885001 RAL-819 108 chr2L 2921265 2921317 chr2L 2921594 2921646 44 328 10.0 8.5 9.2 4.3 381 chr2L 2921265 intron lilli + chr2L 2921456 intron lilli + chr2L 2921646 intron lilli + chr2L_44_2920001 chr2L_2920001 RAL-819 109 chr2L 2933281 2933285 chr2L 2935479 2935483 pogo 6 2198 36.0 21.0 28.5 0.2 2202 chr2L 2933281 intron lilli + chr2L 2934382 intron lilli + chr2L 2935483 intron lilli + chr2L_6_2930001 chr2L_2930001 RAL-819 110 chr2L 2933289 2933332 chr2L 2935477 2935530 pogo 37 2193 13.0 20.0 16.5 2.1 2241 chr2L 2933289 intron lilli + chr2L 2934410 intron lilli + chr2L 2935530 intron lilli + chr2L_37_2930001 chr2L_2930001 RAL-819 111 chr2L 2937393 2937451 chr2L 2937495 2937553 42 101 13.0 7.5 10.2 3.8 160 chr2L 2937393 intron lilli + chr2L 2937473 intron lilli + chr2L 2937553 intron lilli + chr2L_42_2935001 chr2L_2935001 RAL-819 112 chr2L 2964283 2964306 chr2L 2964386 2964409 16 103 23.5 11.0 17.2 0.9 126 chr2L 2964283 3` UTR Rbp9 + chr2L 2964346 3` UTR Rbp9 + chr2L 2964409 3` UTR Rbp9 + chr2L_16_2960001 chr2L_2960001 RAL-819 113 chr2L 3073009 3073060 chr2L 3078237 3078288 copia 54 5226 11.5 19.5 15.5 3.3 5279 chr2L 3073009 intron toc - chr2L 3075648 intron toc - chr2L 3078288 intron toc - chr2L_54_3075001 chr2L_3075001 RAL-819 114 chr2L 3121961 3121999 chr2L 3122072 3122108 26 110 10.5 10.0 10.2 2.3 147 chr2L 3121961 intron toc - chr2L 3122034 intron toc - chr2L 3122108 intron toc - chr2L_26_3120001 chr2L_3120001 RAL-819 115 chr2L 3134271 3134293 chr2L 3134372 3134394 16 100 9.5 28.0 18.8 0.8 123 chr2L 3134271 intron toc - chr2L 3134332 intron toc - chr2L 3134394 intron toc - chr2L_16_3130001 chr2L_3130001 RAL-819 116 chr2L 3134926 3134957 chr2L 3135028 3135059 16 102 11.0 14.0 12.5 1.2 133 chr2L 3134926 intron toc - chr2L 3134992 intron toc - chr2L 3135059 intron toc - chr2L_16_3130001 chr2L_3130001 RAL-819 117 chr2L 3147249 3147281 chr2L 3147351 3147363 21 100 20.0 16.0 18.0 1.1 114 chr2L 3147249 3` UTR Mad - chr2L 3147306 3` UTR Mad - chr2L 3147363 3` UTR Mad - chr2L_21_3145001 chr2L_3145001 RAL-819 118 chr2L 3147282 3147307 chr2L 3147350 3147396 21 91 9.5 16.0 12.8 1.5 114 chr2L 3147282 3` UTR Mad - chr2L 3147339 3` UTR Mad - chr2L 3147396 3` UTR Mad - chr2L_21_3145001 chr2L_3145001 RAL-819 119 chr2L 3192182 3192241 chr2L 3192318 3192340 30 128 7.0 14.0 10.5 2.6 158 chr2L 3192182 exon CG34393 - chr2L 3192261 intron CG34393 - chr2L 3192340 intron CG34393 - chr2L_30_3190001 chr2L_3190001 RAL-819 120 chr2L 3200423 3200489 chr2L 3200903 3200961 22 479 0.5 11.5 6.0 3.1 538 chr2L 3200423 intron CG34393 - chr2L 3200692 intergenic CG34393 - chr2L 3200961 intergenic CG34393 - chr2L_22_3200001 chr2L_3200001 RAL-819 121 chr2L 3202724 3202772 chr2L 3210178 3210205 mdg1 39 7453 11.5 14.5 13.0 2.8 7481 chr2L 3202724 intergenic not near genes chr2L 3206464 intergenic not near genes chr2L 3210205 intergenic CR45336 + chr2L_39_3205001 chr2L_3205001 RAL-819 122 chr2L 3251473 3251527 chr2L 3259063 3259072 springer 36 7587 1.0 11.5 6.2 5.0 7599 chr2L 3251473 intergenic not near genes chr2L 3255272 intergenic not near genes chr2L 3259072 intergenic not near genes chr2L_36_3255001 chr2L_3255001 RAL-819 123 chr2L 3272946 3272968 chr2L 3273047 3273077 5 107 1.0 6.5 3.8 1.0 131 chr2L 3272946 intergenic not near genes chr2L 3273012 intergenic not near genes chr2L 3273077 intergenic not near genes chr2L_5_3270001 chr2L_3270001 RAL-819 124 chr2L 3388576 3388628 chr2L 3388842 3388893 pogo 36 265 12.5 6.0 9.2 3.5 317 chr2L 3388576 intergenic CG42460 - chr2L 3388734 intergenic CG42460 - chr2L 3388893 intergenic CG42460 -,CR44791 + chr2L_36_3385001 chr2L_3385001 RAL-819 125 chr2L 3440291 3440293 chr2L 3440374 3440396 5 94 0.0 8.0 4.0 1.0 105 chr2L 3440291 intergenic not near genes chr2L 3440344 intergenic not near genes chr2L 3440396 intergenic not near genes chr2L_5_3440001 chr2L_3440001 RAL-819 126 chr2L 3440294 3440303 chr2L 3440370 3440403 9 97 0.0 8.0 4.0 1.8 109 chr2L 3440294 intergenic not near genes chr2L 3440348 intergenic not near genes chr2L 3440403 intergenic not near genes chr2L_9_3440001 chr2L_3440001 RAL-819 127 chr2L 3497815 3497817 chr2L 3497918 3497920 4 103 44.5 11.5 28.0 0.1 105 chr2L 3497815 intron tim - chr2L 3497868 intron tim - chr2L 3497920 intron tim - chr2L_4_3495001 chr2L_3495001 RAL-819 128 chr2L 3497818 3497871 chr2L 3497917 3497974 48 101 10.0 11.0 10.5 4.2 156 chr2L 3497818 intron tim - chr2L 3497896 intron tim - chr2L 3497974 intron tim - chr2L_48_3495001 chr2L_3495001 RAL-819 129 chr2L 3508328 3508376 chr2L 3508426 3508436 40 101 11.0 17.0 14.0 2.7 108 chr2L 3508328 intergenic tim -,CR45299 + chr2L 3508382 intergenic CR45299 +,tim - chr2L 3508436 intergenic CR45299 +,tim - chr2L_40_3505001 chr2L_3505001 RAL-819 130 chr2L 3524761 3524792 chr2L 3524864 3524895 20 103 14.5 13.5 14.0 1.3 134 chr2L 3524761 intergenic CG8852 + chr2L 3524828 intergenic CG8852 + chr2L 3524895 intergenic CG8852 + chr2L_20_3520001 chr2L_3520001 RAL-819 131 chr2L 3536084 3536122 chr2L 3536197 3536232 31 113 12.0 5.5 8.8 3.2 148 chr2L 3536084 intergenic not near genes chr2L 3536158 intergenic not near genes chr2L 3536232 intergenic not near genes chr2L_31_3535001 chr2L_3535001 RAL-819 132 chr2L 3540316 3540372 chr2L 3540441 3540496 27 123 9.0 4.5 6.8 3.5 180 chr2L 3540316 intron drm + chr2L 3540406 intron drm + chr2L 3540496 intron drm + chr2L_27_3540001 chr2L_3540001 RAL-819 133 chr2L 3549624 3549676 chr2L 3549747 3549804 39 124 12.0 13.5 12.8 2.8 180 chr2L 3549624 intergenic not near genes chr2L 3549714 intergenic not near genes chr2L 3549804 intergenic not near genes chr2L_39_3545001 chr2L_3545001 RAL-819 134 chr2L 3556988 3557043 chr2L 3557095 3557110 48 98 12.5 18.5 15.5 2.9 122 chr2L 3556988 intergenic not near genes chr2L 3557049 intergenic not near genes chr2L 3557110 intergenic not near genes chr2L_48_3555001 chr2L_3555001 RAL-819 135 chr2L 3603312 3603364 chr2L 3603414 3603466 43 99 11.0 13.0 12.0 3.3 154 chr2L 3603312 intergenic not near genes chr2L 3603389 intergenic not near genes chr2L 3603466 intergenic not near genes chr2L_43_3600001 chr2L_3600001 RAL-819 136 chr2L 3611407 3611416 chr2L 3611511 3611520 6 104 30.5 0.0 15.2 0.4 113 chr2L 3611407 intergenic not near genes chr2L 3611464 intergenic not near genes chr2L 3611520 intergenic not near genes chr2L_6_3610001 chr2L_3610001 RAL-819 137 chr2L 3632240 3632277 chr2L 3632342 3632379 37 101 1.0 25.0 13.0 2.6 139 chr2L 3632240 intron for - chr2L 3632310 intron for - chr2L 3632379 intron for - chr2L_37_3630001 chr2L_3630001 RAL-819 138 chr2L 3634083 3634135 chr2L 3634190 3634237 51 105 14.5 16.0 15.2 3.1 154 chr2L 3634083 intron for - chr2L 3634160 intron for - chr2L 3634237 intron for - chr2L_51_3630001 chr2L_3630001 RAL-819 139 chr2L 3649762 3649795 chr2L 3654989 3655021 copia 21 5226 0.5 8.0 4.2 4.0 5259 chr2L 3649762 intron for - chr2L 3652392 intron for - chr2L 3655021 intron for - chr2L_21_3650001 chr2L_3650001 RAL-819 140 chr2L 3649796 3649807 chr2L 3654988 3655034 copia 6 5218 2.0 8.0 5.0 1.0 5238 chr2L 3649796 intron for - chr2L 3652415 intron for - chr2L 3655034 intron for - chr2L_6_3650001 chr2L_3650001 RAL-819 141 chr2L 3663284 3663339 chr2L 3663388 3663435 42 101 20.0 15.5 17.8 2.2 151 chr2L 3663284 5` UTR CG34340 + chr2L 3663360 intron CG34340 + chr2L 3663435 intron CG34340 + chr2L_42_3660001 chr2L_3660001 RAL-819 142 chr2L 3677878 3677933 chr2L 3677999 3678057 9 122 0.0 6.0 3.0 2.2 179 chr2L 3677878 intron CG34340 + chr2L 3677968 intron CG34340 + chr2L 3678057 intron CG34340 + chr2L_9_3675001 chr2L_3675001 RAL-819 143 chr2L 3688304 3688319 chr2L 3688412 3688426 9 108 11.0 0.0 5.5 1.4 122 chr2L 3688304 intron CG34340 + chr2L 3688365 intron CG34340 + chr2L 3688426 intron CG34340 + chr2L_9_3685001 chr2L_3685001 RAL-819 144 chr2L 3784780 3784826 chr2L 3785664 3785684 16 882 61.5 51.0 56.2 0.3 904 chr2L 3784780 intergenic CG31960 + chr2L 3785232 exon CG31960 + chr2L 3785684 intergenic CG31958 +,CG31960 + chr2L_16_3785001 chr2L_3785001 RAL-819 145 chr2L 3784701 3784704 chr2L 3785612 3785615 4 911 74.0 53.5 63.8 0.1 914 chr2L 3784701 intergenic CG31960 + chr2L 3785158 exon CG31960 + chr2L 3785615 3` UTR CG31960 + chr2L_4_3785001 chr2L_3785001 RAL-819 146 chr2L 3784705 3784713 chr2L 3785617 3785624 6 912 76.0 51.5 63.8 0.1 919 chr2L 3784705 intergenic CG31960 + chr2L 3785164 exon CG31960 + chr2L 3785624 intergenic CG31960 +,CG31958 + chr2L_6_3785001 chr2L_3785001 RAL-819 147 chr2L 3784703 3784719 chr2L 3785628 3785630 5 916 77.0 50.0 63.5 0.1 927 chr2L 3784703 intergenic CG31960 + chr2L 3785166 exon CG31960 + chr2L 3785630 intergenic CG31960 +,CG31958 + chr2L_5_3785001 chr2L_3785001 RAL-819 148 chr2L 3819007 3819024 chr2L 3819114 3819131 18 107 26.0 0.0 13.0 1.3 124 chr2L 3819007 intergenic CR44077 + chr2L 3819069 intergenic not near genes chr2L 3819131 intergenic not near genes chr2L_18_3815001 chr2L_3815001 RAL-819 149 chr2L 3819025 3819054 chr2L 3819112 3819134 24 101 14.0 0.0 7.0 3.0 109 chr2L 3819025 intergenic CR44077 + chr2L 3819080 intergenic not near genes chr2L 3819134 intergenic not near genes chr2L_24_3815001 chr2L_3815001 RAL-819 150 chr2L 3862289 3862297 chr2L 3862390 3862398 6 101 0.0 0.0 0.0 6.0 109 chr2L 3862289 intergenic CR44078 -,CG3964 + chr2L 3862344 intergenic CR44078 -,CG3964 + chr2L 3862398 intergenic CG3964 +,CR44078 - chr2L_6_3860001 chr2L_3860001 RAL-819 151 chr2L 3937428 3937483 chr2L 3937531 3937586 42 101 10.5 12.0 11.2 3.4 158 chr2L 3937428 intron fred - chr2L 3937507 intron fred - chr2L 3937586 intron fred - chr2L_42_3935001 chr2L_3935001 RAL-819 152 chr2L 3943772 3943827 chr2L 3943888 3943943 24 115 3.5 10.0 6.8 3.1 171 chr2L 3943772 intron fred - chr2L 3943858 intron fred - chr2L 3943943 intron fred - chr2L_24_3940001 chr2L_3940001 RAL-819 153 chr2L 3959150 3959203 chr2L 3959251 3959304 32 99 17.5 12.5 15.0 2.0 154 chr2L 3959150 intron fred - chr2L 3959227 intron fred - chr2L 3959304 intron fred - chr2L_32_3955001 chr2L_3955001 RAL-819 154 chr2L 3959283 3959341 chr2L 3959624 3959682 35 338 12.5 12.0 12.2 2.7 399 chr2L 3959283 intron fred - chr2L 3959482 intron fred - chr2L 3959682 intron fred - chr2L_35_3955001 chr2L_3955001 RAL-819 155 chr2L 4037775 4037809 chr2L 4037887 4037921 22 112 8.5 11.0 9.8 2.0 146 chr2L 4037775 intron ed + chr2L 4037848 intron ed + chr2L 4037921 intron ed + chr2L_22_4035001 chr2L_4035001 RAL-819 156 chr2L 4066024 4066058 chr2L 4068866 4068897 Juan 32 2848 18.0 22.5 20.2 1.5 2873 chr2L 4066024 intron ed + chr2L 4067460 intron ed + chr2L 4068897 intron ed + chr2L_32_4065001 chr2L_4065001 RAL-819 157 chr2L 4101159 4101162 chr2L 4101262 4101265 4 103 0.0 13.5 6.8 0.5 106 chr2L 4101159 intron ed + chr2L 4101212 intron ed + chr2L 4101265 intron ed + chr2L_4_4100001 chr2L_4100001 RAL-819 158 chr2L 4150603 4150658 chr2L 4150708 4150763 33 101 5.5 11.5 8.5 3.5 160 chr2L 4150603 exon CG2955 + chr2L 4150683 exon CG2955 + chr2L 4150763 exon CG2955 + chr2L_33_4150001 chr2L_4150001 RAL-819 159 chr2L 4166353 4166411 chr2L 4166460 4166505 47 106 9.5 11.5 10.5 4.1 152 chr2L 4166353 intergenic Or24a - chr2L 4166429 intergenic Or24a - chr2L 4166505 intergenic Or24a - chr2L_47_4165001 chr2L_4165001 RAL-819 160 chr2L 4180109 4180112 chr2L 4180210 4180213 7 101 12.5 11.5 12.0 0.5 104 chr2L 4180109 intergenic not near genes chr2L 4180161 intergenic not near genes chr2L 4180213 intergenic not near genes chr2L_7_4180001 chr2L_4180001 RAL-819 161 chr2L 4180113 4180121 chr2L 4180208 4180222 8 100 11.5 11.0 11.2 0.7 109 chr2L 4180113 intergenic not near genes chr2L 4180168 intergenic not near genes chr2L 4180222 intergenic not near genes chr2L_8_4180001 chr2L_4180001 RAL-819 162 chr2L 4184447 4184507 chr2L 4184791 4184851 34 344 7.5 11.5 9.5 3.2 404 chr2L 4184447 intergenic not near genes chr2L 4184649 intergenic not near genes chr2L 4184851 intergenic not near genes chr2L_34_4180001 chr2L_4180001 RAL-819 163 chr2L 4256545 4256575 chr2L 4256650 4256673 10 104 5.0 11.5 8.2 1.1 128 chr2L 4256545 intergenic CR45295 -,CR45296 -,CR45294 - chr2L 4256609 intergenic CR45295 -,CR45296 - chr2L 4256673 intergenic CR45296 -,CR45295 - chr2L_10_4255001 chr2L_4255001 RAL-819 164 chr2L 4435059 4435212 chr2L 4435157 4435304 8 102 16.0 10.5 13.2 0.6 245 chr2L 4435059 intron CG15431 - chr2L 4435182 intron CG15431 - chr2L 4435304 intron CG15431 - chr2L_8_4435001 chr2L_4435001 RAL-819 165 chr2L 4437185 4437245 chr2L 4437290 4437349 37 102 12.0 9.0 10.5 3.2 164 chr2L 4437185 intron CG15431 - chr2L 4437267 intron CG15431 - chr2L 4437349 intron CG15431 - chr2L_37_4435001 chr2L_4435001 RAL-819 166 chr2L 4450544 4450553 chr2L 4450646 4450655 4 102 30.5 2.0 16.2 0.2 111 chr2L 4450544 intron CG15439 - chr2L 4450600 intron CG15439 - chr2L 4450655 intron CG15439 - chr2L_4_4450001 chr2L_4450001 RAL-819 167 chr2L 4450554 4450588 chr2L 4450645 4450670 23 97 17.0 3.0 10.0 2.1 116 chr2L 4450554 intron CG15439 - chr2L 4450612 intron CG15439 - chr2L 4450670 intron CG15439 - chr2L_23_4450001 chr2L_4450001 RAL-819 168 chr2L 4601682 4601694 chr2L 4609148 4609160 mdg1 11 7466 35.5 11.0 23.2 0.5 7478 chr2L 4601682 intron dp - chr2L 4605421 intron dp - chr2L 4609160 intron dp - chr2L_11_4605001 chr2L_4605001 RAL-819 169 chr2L 4601695 4601734 chr2L 4609145 4609200 mdg1 40 7464 12.5 10.0 11.2 3.3 7505 chr2L 4601695 intron dp - chr2L 4605448 intron dp - chr2L 4609200 intron dp - chr2L_40_4605001 chr2L_4605001 RAL-819 170 chr2L 4661821 4661854 chr2L 4669425 4669459 opus 18 7603 11.0 25.0 18.0 0.9 7638 chr2L 4661821 intergenic not near genes chr2L 4665640 intergenic not near genes chr2L 4669459 intergenic not near genes chr2L_18_4665001 chr2L_4665001 RAL-819 171 chr2L 4676836 4676860 chr2L 4676938 4676953 19 102 23.5 12.0 17.8 1.0 117 chr2L 4676836 intergenic not near genes chr2L 4676894 intergenic not near genes chr2L 4676953 intergenic not near genes chr2L_19_4675001 chr2L_4675001 RAL-819 172 chr2L 4676863 4676891 chr2L 4676937 4676979 26 96 13.0 12.0 12.5 1.9 116 chr2L 4676863 intergenic not near genes chr2L 4676921 intergenic not near genes chr2L 4676979 intergenic not near genes chr2L_26_4675001 chr2L_4675001 RAL-819 173 chr2L 4679965 4679991 chr2L 4680079 4680105 5 111 7.0 0.0 3.5 1.1 140 chr2L 4679965 intergenic not near genes chr2L 4680035 intergenic not near genes chr2L 4680105 intergenic not near genes chr2L_5_4680001 chr2L_4680001 RAL-819 174 chr2L 4726518 4726557 chr2L 4726624 4726654 11 104 7.0 15.0 11.0 0.9 136 chr2L 4726518 intergenic not near genes chr2L 4726586 intergenic not near genes chr2L 4726654 intergenic not near genes chr2L_11_4725001 chr2L_4725001 RAL-819 175 chr2L 4738173 4738177 chr2L 4738262 4738269 5 96 24.5 20.0 22.2 0.2 96 chr2L 4738173 intron CG15630 - chr2L 4738221 intron CG15630 - chr2L 4738269 exon CG15630 - chr2L_5_4735001 chr2L_4735001 RAL-819 176 chr2L 4738179 4738179 chr2L 4738258 4738282 4 92 23.5 17.5 20.5 0.2 103 chr2L 4738179 intron CG15630 - chr2L 4738230 intron CG15630 - chr2L 4738282 exon CG15630 - chr2L_4_4735001 chr2L_4735001 RAL-819 177 chr2L 4738180 4738204 chr2L 4738257 4738289 24 94 13.5 17.5 15.5 1.5 109 chr2L 4738180 intron CG15630 - chr2L 4738234 intron CG15630 - chr2L 4738289 exon CG15630 - chr2L_24_4735001 chr2L_4735001 RAL-819 178 chr2L 4770089 4770138 chr2L 4770190 4770246 42 104 9.5 11.0 10.2 3.8 157 chr2L 4770089 intron CG15630 - chr2L 4770168 intron CG15630 - chr2L 4770246 intron CG15630 - chr2L_42_4770001 chr2L_4770001 RAL-819 179 chr2L 4793283 4793322 chr2L 4793603 4793642 13 319 14.5 6.5 10.5 1.1 359 chr2L 4793283 intron CG15630 - chr2L 4793462 intron CG15630 - chr2L 4793642 exon CG15630 - chr2L_13_4790001 chr2L_4790001 RAL-819 180 chr2L 4819470 4819519 chr2L 4819618 4819667 22 144 12.0 16.5 14.2 1.4 197 chr2L 4819470 intergenic not near genes chr2L 4819568 intergenic not near genes chr2L 4819667 intergenic not near genes chr2L_22_4815001 chr2L_4815001 RAL-819 181 chr2L 4858450 4858480 chr2L 4858563 4858593 28 112 4.5 0.5 2.5 8.0 143 chr2L 4858450 intron pog + chr2L 4858522 intron pog + chr2L 4858593 intron pog + chr2L_28_4855001 chr2L_4855001 RAL-819 182 chr2L 4869445 4869499 chr2L 4869550 4869604 50 102 7.0 19.0 13.0 3.6 159 chr2L 4869445 intron pog + chr2L 4869524 intron pog + chr2L 4869604 intron pog + chr2L_50_4865001 chr2L_4865001 RAL-819 183 chr2L 4918144 4918191 chr2L 4923242 4923289 jockey 34 5097 15.5 16.5 16.0 2.0 5145 chr2L 4918144 intron hoe1 - chr2L 4920716 intron hoe1 - chr2L 4923289 intron hoe1 - chr2L_34_4920001 chr2L_4920001 RAL-819 184 chr2L 4953504 4953511 chr2L 4953770 4953777 pogo 7 266 32.0 0.5 16.2 0.4 273 chr2L 4953504 intergenic Jon25Bii - chr2L 4953640 intergenic not near genes chr2L 4953777 intergenic not near genes chr2L_7_4950001 chr2L_4950001 RAL-819 185 chr2L 5021692 5021731 chr2L 5021793 5021827 39 99 20.0 11.0 15.5 2.4 135 chr2L 5021692 intron vkg - chr2L 5021760 intron vkg - chr2L 5021827 intron vkg - chr2L_39_5020001 chr2L_5020001 RAL-819 186 chr2L 5025110 5025165 chr2L 5025211 5025266 21 99 11.0 0.0 5.5 3.2 156 chr2L 5025110 intron vkg - chr2L 5025188 intron vkg - chr2L 5025266 intron vkg - chr2L_21_5025001 chr2L_5025001 RAL-819 187 chr2L 5040661 5040714 chr2L 5040782 5040835 59 120 11.5 16.5 14.0 3.9 174 chr2L 5040661 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040748 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040835 3` UTR CG31650 - chr2L_59_5040001 chr2L_5040001 RAL-819 188 chr2L 5085021 5085068 chr2L 5085138 5085172 11 116 0.0 9.0 4.5 2.0 151 chr2L 5085021 intron pgant5 - chr2L 5085096 intron pgant5 - chr2L 5085172 intron pgant5 - chr2L_11_5085001 chr2L_5085001 RAL-819 189 chr2L 5117272 5117325 chr2L 5117379 5117432 32 104 7.0 15.0 11.0 2.7 160 chr2L 5117272 intron Msp300 + chr2L 5117352 intron Msp300 + chr2L 5117432 intron Msp300 + chr2L_32_5115001 chr2L_5115001 RAL-819 190 chr2L 5242936 5242936 chr2L 16217660 16217660 4 10974724 64.0 56.0 60.0 0.1 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_4_10730001 chr2L_10730001 RAL-819 191 chr2L 5338457 5338508 chr2L 5338597 5338615 10 136 8.5 10.5 9.5 1.0 158 chr2L 5338457 intergenic fusl - chr2L 5338536 intergenic fusl - chr2L 5338615 intergenic not near genes chr2L_10_5335001 chr2L_5335001 RAL-819 192 chr2L 5342781 5342804 chr2L 5345151 5345174 Doc 18 2370 9.0 4.5 6.8 2.3 2393 chr2L 5342781 intergenic not near genes chr2L 5343978 intergenic not near genes chr2L 5345174 intergenic not near genes chr2L_18_5340001 chr2L_5340001 RAL-819 193 chr2L 5378404 5378453 chr2L 5378508 5378557 36 104 10.0 9.5 9.8 3.3 153 chr2L 5378404 intergenic not near genes chr2L 5378480 intergenic not near genes chr2L 5378557 intergenic not near genes chr2L_36_5375001 chr2L_5375001 RAL-819 194 chr2L 5433844 5433854 chr2L 5433950 5433976 6 119 0.0 6.5 3.2 1.4 132 chr2L 5433844 3` UTR CR43715 - chr2L 5433910 3` UTR CR43715 - chr2L 5433976 3` UTR CR43715 - chr2L_6_5430001 chr2L_5430001 RAL-819 195 chr2L 5436519 5436539 chr2L 5436614 5436641 14 94 29.0 34.0 31.5 0.4 122 chr2L 5436519 3` UTR CR31647 - chr2L 5436580 3` UTR CR31647 - chr2L 5436641 3` UTR CR31647 - chr2L_14_5435001 chr2L_5435001 RAL-819 196 chr2L 5448012 5448020 chr2L 5448121 5448129 4 109 0.0 18.0 9.0 0.4 117 chr2L 5448012 intergenic not near genes chr2L 5448070 intergenic not near genes chr2L 5448129 intergenic not near genes chr2L_4_5445001 chr2L_5445001 RAL-819 197 chr2L 5449684 5449697 chr2L 5449804 5449804 7 119 12.0 0.0 6.0 1.0 120 chr2L 5449684 intergenic not near genes chr2L 5449744 intergenic not near genes chr2L 5449804 intergenic not near genes chr2L_7_5445001 chr2L_5445001 RAL-819 198 chr2L 5501422 5501471 chr2L 5501522 5501572 33 99 11.0 10.5 10.8 2.8 150 chr2L 5501422 intergenic not near genes chr2L 5501497 intergenic not near genes chr2L 5501572 intergenic not near genes chr2L_33_5500001 chr2L_5500001 RAL-819 199 chr2L 5511300 5511357 chr2L 5511408 5511465 44 107 9.0 12.5 10.8 3.7 165 chr2L 5511300 intergenic not near genes chr2L 5511382 intergenic not near genes chr2L 5511465 intergenic not near genes chr2L_44_5510001 chr2L_5510001 RAL-819 200 chr2L 5563660 5563718 chr2L 5563769 5563827 40 108 4.5 9.0 6.8 5.1 167 chr2L 5563660 intergenic GluRIIB + chr2L 5563744 intergenic GluRIIB + chr2L 5563827 intergenic GluRIIB + chr2L_40_5560001 chr2L_5560001 RAL-819 201 chr2L 5628174 5628223 chr2L 5628284 5628332 10 108 0.0 15.0 7.5 1.2 158 chr2L 5628174 intron CG31646 - chr2L 5628253 intron CG31646 - chr2L 5628332 intron CG31646 - chr2L_10_5625001 chr2L_5625001 RAL-819 202 chr2L 5666268 5666322 chr2L 5666381 5666437 21 113 14.5 7.5 11.0 1.8 169 chr2L 5666268 intron Hsp60C + chr2L 5666352 intron Hsp60C + chr2L 5666437 intron Hsp60C + chr2L_21_5665001 chr2L_5665001 RAL-819 203 chr2L 5686435 5686445 chr2L 5686542 5686552 12 106 9.0 18.0 13.5 0.8 117 chr2L 5686435 intergenic not near genes chr2L 5686494 intergenic not near genes chr2L 5686552 intergenic not near genes chr2L_12_5685001 chr2L_5685001 RAL-819 204 chr2L 5688632 5688648 chr2L 5688738 5688754 12 105 23.0 17.5 20.2 0.6 122 chr2L 5688632 intergenic not near genes chr2L 5688693 intergenic not near genes chr2L 5688754 intergenic not near genes chr2L_12_5685001 chr2L_5685001 RAL-819 205 chr2L 5688649 5688688 chr2L 5688737 5688794 36 99 8.0 17.0 12.5 2.7 145 chr2L 5688649 intergenic not near genes chr2L 5688722 intergenic not near genes chr2L 5688794 intergenic not near genes chr2L_36_5685001 chr2L_5685001 RAL-819 206 chr2L 5695835 5695892 chr2L 5695952 5696009 49 116 9.5 12.0 10.8 4.2 174 chr2L 5695835 intergenic not near genes chr2L 5695922 intergenic not near genes chr2L 5696009 intergenic not near genes chr2L_49_5695001 chr2L_5695001 RAL-819 207 chr2L 5756274 5756329 chr2L 5756379 5756434 52 100 13.5 12.0 12.8 3.8 160 chr2L 5756274 intron CG11030 + chr2L 5756354 intron CG11030 + chr2L 5756434 intron CG11030 + chr2L_52_5755001 chr2L_5755001 RAL-819 208 chr2L 5805179 5805240 chr2L 5805306 5805367 52 125 10.0 9.5 9.8 4.8 188 chr2L 5805179 intergenic CG11034 + chr2L 5805273 intergenic CG11034 + chr2L 5805367 intergenic CG11034 + chr2L_52_5805001 chr2L_5805001 RAL-819 209 chr2L 5806224 5806238 chr2L 5806352 5806366 8 128 12.0 25.0 18.5 0.4 142 chr2L 5806224 intron CG11034 + chr2L 5806295 intron CG11034 + chr2L 5806366 intron CG11034 + chr2L_8_5805001 chr2L_5805001 RAL-819 210 chr2L 5825045 5825105 chr2L 5825155 5825224 30 113 10.5 0.0 5.2 4.8 179 chr2L 5825045 5` UTR TrissinR + chr2L 5825134 5` UTR TrissinR + chr2L 5825224 5` UTR TrissinR + chr2L_30_5825001 chr2L_5825001 RAL-819 211 chr2L 5827687 5827733 chr2L 5836720 5836766 roo 32 9031 16.0 14.5 15.2 2.0 9079 chr2L 5827687 intron TrissinR + chr2L 5832226 intron TrissinR + chr2L 5836766 intron TrissinR + chr2L_32_5830001 chr2L_5830001 RAL-819 212 chr2L 5883164 5883167 chr2L 5883269 5883272 4 105 0.5 33.5 17.0 0.2 108 chr2L 5883164 intergenic not near genes chr2L 5883218 intergenic not near genes chr2L 5883272 intergenic CG44574 + chr2L_4_5880001 chr2L_5880001 RAL-819 213 chr2L 5926258 5926455 chr2L 5926346 5926578 13 158 0.0 0.0 0.0 13.0 320 chr2L 5926258 intron dsf + chr2L 5926418 intron dsf + chr2L 5926578 intron dsf + chr2L_13_5925001 chr2L_5925001 RAL-819 214 chr2L 6078143 6078193 chr2L 6078251 6078301 48 105 10.5 13.5 12.0 3.7 158 chr2L 6078143 intergenic CR9162 + chr2L 6078222 intergenic CR9162 + chr2L 6078301 intergenic CR9162 + chr2L_48_6075001 chr2L_6075001 RAL-819 215 chr2L 6185422 6185471 chr2L 6185517 6185574 39 93 8.5 14.0 11.2 3.2 152 chr2L 6185422 intron CG34380 + chr2L 6185498 intron CG34380 + chr2L 6185574 intron CG34380 + chr2L_39_6185001 chr2L_6185001 RAL-819 216 chr2L 6251129 6251182 chr2L 6251523 6251576 38 392 10.0 15.5 12.8 2.8 447 chr2L 6251129 intergenic not near genes chr2L 6251352 intergenic not near genes chr2L 6251576 intergenic not near genes chr2L_38_6250001 chr2L_6250001 RAL-819 217 chr2L 6268488 6268547 chr2L 6268599 6268626 15 107 6.5 9.5 8.0 1.7 138 chr2L 6268488 intron Ddr + chr2L 6268557 intron Ddr + chr2L 6268626 intron Ddr + chr2L_15_6265001 chr2L_6265001 RAL-819 218 chr2L 6279615 6279654 chr2L 6279719 6279758 INE-1 31 103 19.0 0.0 9.5 3.0 143 chr2L 6279615 intron Ddr + chr2L 6279686 intron Ddr + chr2L 6279758 intron Ddr + chr2L_31_6275001 chr2L_6275001 RAL-819 219 chr2L 6283917 6283943 chr2L 6284053 6284079 10 134 31.0 5.0 18.0 0.5 162 chr2L 6283917 intron Ddr + chr2L 6283998 intron Ddr + chr2L 6284079 intron Ddr + chr2L_10_6280001 chr2L_6280001 RAL-819 220 chr2L 6342388 6342392 chr2L 6342495 6342499 4 107 0.0 21.0 10.5 0.3 111 chr2L 6342388 intron Cpr + chr2L 6342444 intron Cpr + chr2L 6342499 intron Cpr + chr2L_4_6340001 chr2L_6340001 RAL-819 221 chr2L 6342393 6342423 chr2L 6342490 6342530 28 104 0.0 18.5 9.2 2.7 137 chr2L 6342393 intron Cpr + chr2L 6342462 intron Cpr + chr2L 6342530 intron Cpr + chr2L_28_6340001 chr2L_6340001 RAL-819 222 chr2L 6349052 6349072 chr2L 6349155 6349175 19 103 13.5 8.5 11.0 1.6 123 chr2L 6349052 intergenic CG9498 - chr2L 6349114 intergenic CG9498 - chr2L 6349175 intergenic CG9498 - chr2L_19_6345001 chr2L_6345001 RAL-819 223 chr2L 6363131 6363177 chr2L 6366073 6366124 Burdock 38 2945 12.0 11.0 11.5 3.0 2993 chr2L 6363131 intergenic not near genes chr2L 6364628 intergenic not near genes chr2L 6366124 intergenic not near genes chr2L_38_6360001 chr2L_6360001 RAL-819 224 chr2L 6363179 6363183 chr2L 6366071 6366097 Burdock 5 2924 11.0 10.5 10.8 0.4 2918 chr2L 6363179 intergenic not near genes chr2L 6364638 intergenic not near genes chr2L 6366097 intergenic not near genes chr2L_5_6360001 chr2L_6360001 RAL-819 225 chr2L 6426833 6426886 chr2L 6445118 6445171 roo 55 18283 14.5 15.5 15.0 3.4 18338 chr2L 6426833 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445171 exon CG9527 - chr2L_55_6435001 chr2L_6435001 RAL-819 226 chr2L 6470711 6470732 chr2L 6470835 6470863 20 128 25.5 5.0 15.2 1.2 152 chr2L 6470711 intron mmy - chr2L 6470787 intron mmy - chr2L 6470863 intron mmy - chr2L_20_6470001 chr2L_6470001 RAL-819 227 chr2L 6470733 6470751 chr2L 6470834 6470880 11 126 13.0 4.5 8.8 1.1 147 chr2L 6470733 intron mmy - chr2L 6470806 intron mmy - chr2L 6470880 intron mmy - chr2L_11_6470001 chr2L_6470001 RAL-819 228 chr2L 6483526 6483625 chr2L 6483676 6483739 7 139 28.0 0.5 14.2 0.5 213 chr2L 6483526 exon DLP + chr2L 6483632 exon DLP + chr2L 6483739 exon DLP + chr2L_7_6480001 chr2L_6480001 RAL-819 229 chr2L 6483571 6483590 chr2L 6483667 6483728 9 96 51.5 4.5 28.0 0.3 157 chr2L 6483571 exon DLP + chr2L 6483650 exon DLP + chr2L 6483728 exon DLP + chr2L_9_6480001 chr2L_6480001 RAL-819 230 chr2L 6483765 6483782 chr2L 6483886 6483903 8 119 6.5 32.0 19.2 0.4 138 chr2L 6483765 exon DLP + chr2L 6483834 exon DLP + chr2L 6483903 exon DLP + chr2L_8_6480001 chr2L_6480001 RAL-819 231 chr2L 6514100 6514162 chr2L 6514203 6514227 40 90 9.0 11.0 10.0 3.6 127 chr2L 6514100 intron CG31637 + chr2L 6514164 intron CG31637 + chr2L 6514227 intron CG31637 + chr2L_40_6510001 chr2L_6510001 RAL-819 232 chr2L 6527231 6527236 chr2L 6527335 6527339 5 104 10.5 13.0 11.8 0.4 108 chr2L 6527231 intergenic eya -,CG31637 + chr2L 6527285 intergenic eya -,CG31637 + chr2L 6527339 intergenic eya -,CG31637 + chr2L_5_6525001 chr2L_6525001 RAL-819 233 chr2L 6530315 6530356 chr2L 6530457 6530513 22 154 3.5 10.0 6.8 2.8 198 chr2L 6530315 exon eya - chr2L 6530414 intron eya - chr2L 6530513 intron eya - chr2L_22_6530001 chr2L_6530001 RAL-819 234 chr2L 6544346 6544395 chr2L 6544463 6544512 41 115 12.0 13.5 12.8 3.0 166 chr2L 6544346 intron eya - chr2L 6544429 intron eya - chr2L 6544512 intron eya - chr2L_41_6540001 chr2L_6540001 RAL-819 235 chr2L 6691613 6691642 chr2L 6691715 6691744 28 100 14.0 26.5 20.2 1.3 131 chr2L 6691613 intron Tsp - chr2L 6691678 intron Tsp - chr2L 6691744 intron Tsp - chr2L_28_6690001 chr2L_6690001 RAL-819 236 chr2L 6740743 6740753 chr2L 6740836 6740859 9 104 0.0 18.0 9.0 0.9 116 chr2L 6740743 intergenic not near genes chr2L 6740801 intergenic not near genes chr2L 6740859 intergenic not near genes chr2L_9_6740001 chr2L_6740001 RAL-819 237 chr2L 6818103 6818141 chr2L 6818217 6818253 5 113 6.0 15.5 10.8 0.4 150 chr2L 6818103 intergenic not near genes chr2L 6818178 intergenic not near genes chr2L 6818253 intergenic not near genes chr2L_5_6815001 chr2L_6815001 RAL-819 238 chr2L 6850354 6850411 chr2L 6850462 6850483 27 105 12.5 10.5 11.5 2.2 129 chr2L 6850354 intergenic not near genes chr2L 6850418 intergenic not near genes chr2L 6850483 intergenic not near genes chr2L_27_6850001 chr2L_6850001 RAL-819 239 chr2L 6876117 6876148 chr2L 6883833 6883838 diver 16 7712 24.0 15.0 19.5 0.8 7721 chr2L 6876117 intron Nlg2 + chr2L 6879978 intron Nlg2 + chr2L 6883838 intron Nlg2 + chr2L_16_6875001 chr2L_6875001 RAL-819 240 chr2L 6876149 6876172 chr2L 6883830 6883888 diver 26 7701 12.0 13.0 12.5 1.9 7739 chr2L 6876149 intron Nlg2 + chr2L 6880018 intron Nlg2 + chr2L 6883888 intron Nlg2 + chr2L_26_6880001 chr2L_6880001 RAL-819 241 chr2L 6991413 6991436 chr2L 6998552 6998579 HMS-Beagle 17 7139 26.5 16.5 21.5 0.8 7166 chr2L 6991413 intron uif - chr2L 6994996 intron uif - chr2L 6998579 intron uif - chr2L_17_6990001 chr2L_6990001 RAL-819 242 chr2L 6999218 6999263 chr2L 6999374 6999418 28 153 9.0 11.0 10.0 2.5 200 chr2L 6999218 intron uif - chr2L 6999318 intron uif - chr2L 6999418 intron uif - chr2L_28_6995001 chr2L_6995001 RAL-819 243 chr2L 7025896 7025934 chr2L 7026001 7026044 18 109 12.0 8.0 10.0 1.6 148 chr2L 7025896 intron CG31908 - chr2L 7025970 intron CG31908 - chr2L 7026044 intron CG31908 - chr2L_18_7025001 chr2L_7025001 RAL-819 244 chr2L 7042036 7042088 chr2L 7042150 7042202 31 113 9.0 14.0 11.5 2.5 166 chr2L 7042036 intron milt + chr2L 7042119 intron milt + chr2L 7042202 intron milt + chr2L_31_7040001 chr2L_7040001 RAL-819 245 chr2L 7088843 7088900 chr2L 7089069 7089126 18 226 0.0 2.0 1.0 9.0 283 chr2L 7088843 intergenic not near genes chr2L 7088984 intergenic not near genes chr2L 7089126 intergenic not near genes chr2L_18_7085001 chr2L_7085001 RAL-819 246 chr2L 7089598 7089640 chr2L 7089702 7089750 27 107 1.0 14.5 7.8 3.1 152 chr2L 7089598 intergenic not near genes chr2L 7089674 intergenic not near genes chr2L 7089750 intergenic not near genes chr2L_27_7085001 chr2L_7085001 RAL-819 247 chr2L 7095826 7095842 chr2L 7095908 7095947 5 100 11.5 0.0 5.8 0.7 121 chr2L 7095826 intergenic not near genes chr2L 7095886 intergenic not near genes chr2L 7095947 intergenic not near genes chr2L_5_7095001 chr2L_7095001 RAL-819 248 chr2L 7111729 7111775 chr2L 7111840 7111850 21 107 17.0 0.0 8.5 2.2 121 chr2L 7111729 intron Pvf3 - chr2L 7111790 intron Pvf3 - chr2L 7111850 intron Pvf3 - chr2L_21_7110001 chr2L_7110001 RAL-819 249 chr2L 7125765 7125808 chr2L 7125906 7125949 25 140 12.0 10.5 11.2 2.0 184 chr2L 7125765 intron Pvf3 - chr2L 7125857 intron Pvf3 - chr2L 7125949 intron Pvf3 - chr2L_25_7125001 chr2L_7125001 RAL-819 250 chr2L 7126834 7126875 chr2L 7126938 7126979 31 103 15.5 0.0 7.8 3.5 145 chr2L 7126834 intron Pvf3 - chr2L 7126906 intron Pvf3 - chr2L 7126979 intron Pvf3 - chr2L_31_7125001 chr2L_7125001 RAL-819 251 chr2L 7197971 7198022 chr2L 7198075 7198126 29 102 9.0 9.0 9.0 2.9 155 chr2L 7197971 intron CG4502 - chr2L 7198048 intron CG4502 - chr2L 7198126 intron CG4502 - chr2L_29_7195001 chr2L_7195001 RAL-819 252 chr2L 7225224 7225271 chr2L 7225333 7225380 32 108 15.5 18.0 16.8 1.8 156 chr2L 7225224 intron Ndae1 - chr2L 7225302 intron Ndae1 - chr2L 7225380 intron Ndae1 - chr2L_32_7225001 chr2L_7225001 RAL-819 253 chr2L 7228085 7228145 chr2L 7228196 7228236 31 108 6.5 11.0 8.8 3.2 151 chr2L 7228085 intron,exon Ndae1 -,CG43799 + chr2L 7228160 intron,exon Ndae1 -,CG43799 + chr2L 7228236 intron,exon Ndae1 -,CG43799 + chr2L_31_7225001 chr2L_7225001 RAL-819 254 chr2L 7254523 7254546 chr2L 7254620 7254649 16 102 0.0 7.0 3.5 3.6 126 chr2L 7254523 intergenic not near genes chr2L 7254586 intergenic not near genes chr2L 7254649 intergenic not near genes chr2L_16_7250001 chr2L_7250001 RAL-819 255 chr2L 7325890 7325939 chr2L 7326000 7326049 28 107 14.5 9.5 12.0 2.2 159 chr2L 7325890 intergenic not near genes chr2L 7325970 intergenic not near genes chr2L 7326049 intergenic not near genes chr2L_28_7325001 chr2L_7325001 RAL-819 256 chr2L 7326461 7326504 chr2L 7326604 7326647 20 143 13.5 11.5 12.5 1.5 186 chr2L 7326461 intergenic not near genes chr2L 7326554 intergenic not near genes chr2L 7326647 intergenic not near genes chr2L_20_7325001 chr2L_7325001 RAL-819 257 chr2L 7330247 7330294 chr2L 7330351 7330398 19 102 6.0 9.0 7.5 2.2 151 chr2L 7330247 intergenic not near genes chr2L 7330322 intergenic not near genes chr2L 7330398 intergenic not near genes chr2L_19_7330001 chr2L_7330001 RAL-819 258 chr2L 7343301 7343330 chr2L 7350442 7350470 roo 11 7137 24.0 10.0 17.0 0.6 7169 chr2L 7343301 intron Wnt6 + chr2L 7346886 intron Wnt6 + chr2L 7350470 intron Wnt6 + chr2L_11_7345001 chr2L_7345001 RAL-819 259 chr2L 7343332 7343358 chr2L 7350441 7350498 roo 22 7136 14.5 10.0 12.2 1.7 7166 chr2L 7343332 intron Wnt6 + chr2L 7346915 intron Wnt6 + chr2L 7350498 intron Wnt6 + chr2L_22_7345001 chr2L_7345001 RAL-819 260 chr2L 7351033 7351085 chr2L 7351155 7351191 26 125 6.0 12.5 9.2 2.5 158 chr2L 7351033 intron Wnt6 + chr2L 7351112 intron Wnt6 + chr2L 7351191 exon Wnt6 + chr2L_26_7350001 chr2L_7350001 RAL-819 261 chr2L 7399282 7399335 chr2L 7399680 7399733 39 397 1.5 11.5 6.5 5.2 451 chr2L 7399282 intergenic not near genes chr2L 7399508 intergenic not near genes chr2L 7399733 intergenic not near genes chr2L_39_7395001 chr2L_7395001 RAL-819 262 chr2L 7436191 7436202 chr2L 7436305 7436319 9 114 15.0 1.5 8.2 1.0 128 chr2L 7436191 intergenic not near genes chr2L 7436255 intergenic not near genes chr2L 7436319 intergenic not near genes chr2L_9_7435001 chr2L_7435001 RAL-819 263 chr2L 7436205 7436219 chr2L 7436304 7436312 10 109 9.0 1.5 5.2 1.6 107 chr2L 7436205 intergenic not near genes chr2L 7436258 intergenic not near genes chr2L 7436312 intergenic not near genes chr2L_10_7435001 chr2L_7435001 RAL-819 264 chr2L 7447783 7447795 chr2L 7447898 7447914 6 118 3.5 9.5 6.5 0.8 131 chr2L 7447783 5` UTR santa-maria - chr2L 7447848 5` UTR santa-maria - chr2L 7447914 5` UTR santa-maria - chr2L_6_7445001 chr2L_7445001 RAL-819 265 chr2L 7447802 7447811 chr2L 7447886 7447921 7 112 3.5 7.0 5.2 1.1 119 chr2L 7447802 5` UTR santa-maria - chr2L 7447862 5` UTR santa-maria - chr2L 7447921 5` UTR santa-maria - chr2L_7_7445001 chr2L_7445001 RAL-819 266 chr2L 7449729 7449763 chr2L 7449831 7449865 20 101 12.0 0.5 6.2 2.8 136 chr2L 7449729 5` UTR santa-maria - chr2L 7449797 5` UTR santa-maria - chr2L 7449865 5` UTR santa-maria - chr2L_20_7445001 chr2L_7445001 RAL-819 267 chr2L 7454680 7454688 chr2L 7454794 7454802 9 114 15.5 9.5 12.5 0.7 122 chr2L 7454680 intergenic Gr28b -,Gr28a - chr2L 7454741 intergenic Gr28b - chr2L 7454802 intergenic Gr28b - chr2L_9_7450001 chr2L_7450001 RAL-819 268 chr2L 7459170 7459221 chr2L 7459356 7459406 13 185 13.5 0.0 6.8 1.7 236 chr2L 7459170 intron Gr28b - chr2L 7459288 intron Gr28b - chr2L 7459406 intron Gr28b - chr2L_13_7455001 chr2L_7455001 RAL-819 269 chr2L 7489684 7489721 chr2L 7489798 7489835 12 113 8.5 7.5 8.0 1.3 151 chr2L 7489684 intron Ziz - chr2L 7489760 intron Ziz - chr2L 7489835 intron Ziz - chr2L_12_7485001 chr2L_7485001 RAL-819 270 chr2L 7548086 7548108 chr2L 7550553 7550565 Burdock 15 2466 17.0 24.0 20.5 0.7 2479 chr2L 7548086 intron RapGAP1 - chr2L 7549326 intron RapGAP1 - chr2L 7550565 intron RapGAP1 - chr2L_15_7545001 chr2L_7545001 RAL-819 271 chr2L 7572441 7572494 chr2L 7572616 7572669 48 173 6.5 11.0 8.8 4.9 228 chr2L 7572441 intron RapGAP1 - chr2L 7572555 intron RapGAP1 - chr2L 7572669 intron RapGAP1 - chr2L_48_7570001 chr2L_7570001 RAL-819 272 chr2L 7597477 7597519 chr2L 7597594 7597629 31 114 13.0 16.0 14.5 2.0 152 chr2L 7597477 intergenic not near genes chr2L 7597553 intergenic not near genes chr2L 7597629 intergenic not near genes chr2L_31_7595001 chr2L_7595001 RAL-819 273 chr2L 7640404 7640421 chr2L 7640518 7640530 9 113 14.0 8.5 11.2 0.7 126 chr2L 7640404 intergenic not near genes chr2L 7640467 intergenic not near genes chr2L 7640530 intergenic not near genes chr2L_9_7640001 chr2L_7640001 RAL-819 274 chr2L 7720066 7720114 chr2L 7722380 7722434 30 2316 80.5 63.0 71.8 0.4 2368 chr2L 7720066 exon CG13794 - chr2L 7721250 exon CG13794 - chr2L 7722434 intron CG13794 - chr2L_30_7720001 chr2L_7720001 RAL-819 275 chr2L 7959015 7959054 chr2L 7960451 7960490 pogo 24 1434 13.5 12.0 12.8 1.7 1475 chr2L 7959015 intron Snoo - chr2L 7959752 intron Snoo - chr2L 7960490 intron Snoo - chr2L_24_7955001 chr2L_7955001 RAL-819 276 chr2L 7965528 7965538 chr2L 7965636 7965646 15 107 12.5 15.5 14.0 1.0 118 chr2L 7965528 intron Snoo - chr2L 7965587 intron Snoo - chr2L 7965646 intron Snoo - chr2L_15_7965001 chr2L_7965001 RAL-819 277 chr2L 7965540 7965573 chr2L 7965632 7965681 35 102 5.5 14.0 9.8 3.2 141 chr2L 7965540 intron Snoo - chr2L 7965610 intron Snoo - chr2L 7965681 intron Snoo - chr2L_35_7965001 chr2L_7965001 RAL-819 278 chr2L 7973043 7973098 chr2L 7973209 7973264 47 166 12.0 9.5 10.8 4.0 221 chr2L 7973043 intron Snoo - chr2L 7973154 intron Snoo - chr2L 7973264 intron Snoo - chr2L_47_7970001 chr2L_7970001 RAL-819 279 chr2L 7977063 7977113 chr2L 7984063 7984107 297 22 6997 13.0 15.5 14.2 1.4 7044 chr2L 7977063 intron Snoo - chr2L 7980585 intron Snoo - chr2L 7984107 intron,5` UTR Snoo -,CG7231 + chr2L_22_7980001 chr2L_7980001 RAL-819 280 chr2L 7986904 7986910 chr2L 7987015 7987021 6 111 11.5 20.0 15.8 0.4 117 chr2L 7986904 3` UTR pes - chr2L 7986962 3` UTR pes - chr2L 7987021 3` UTR pes - chr2L_6_7985001 chr2L_7985001 RAL-819 281 chr2L 8013589 8013618 chr2L 8018819 8018825 copia 12 5228 14.5 0.5 7.5 1.4 5236 chr2L 8013589 intron Tg + chr2L 8016207 intron Tg + chr2L 8018825 intron Tg + chr2L_12_8015001 chr2L_8015001 RAL-819 282 chr2L 8013624 8013637 chr2L 8023585 8023598 copia 11 9960 8.0 10.5 9.2 1.1 9974 chr2L 8013624 intron Tg + chr2L 8018611 intron Tg + chr2L 8023598 intron Tg + chr2L_11_8015001 chr2L_8015001 RAL-819 283 chr2L 8013639 8013644 chr2L 8023600 8023605 copia 8 9961 5.5 16.5 11.0 0.7 9966 chr2L 8013639 intron Tg + chr2L 8018622 intron Tg + chr2L 8023605 intron Tg + chr2L_8_8015001 chr2L_8015001 RAL-819 284 chr2L 8018822 8018826 chr2L 8023631 8023635 Doc 6 4808 0.0 27.0 13.5 0.4 4813 chr2L 8018822 intron Tg + chr2L 8021228 intron Tg + chr2L 8023635 intron Tg + chr2L_6_8020001 chr2L_8020001 RAL-819 285 chr2L 8018827 8018830 chr2L 8023620 8023639 Doc 6 4806 0.0 23.5 11.8 0.5 4812 chr2L 8018827 intron Tg + chr2L 8021233 intron Tg + chr2L 8023639 intron Tg + chr2L_6_8020001 chr2L_8020001 RAL-819 286 chr2L 8032609 8032624 chr2L 8032725 8032730 9 114 13.0 0.0 6.5 1.2 121 chr2L 8032609 intron,exon CG7367 -,Cka + chr2L 8032670 intron,intron CG7367 -,Cka + chr2L 8032730 intron,intron CG7367 -,Cka + chr2L_9_8030001 chr2L_8030001 RAL-819 287 chr2L 8034583 8034590 chr2L 8034709 8034716 7 125 27.0 20.5 23.8 0.3 133 chr2L 8034583 intron,intron CG7367 -,Cka + chr2L 8034650 intron,intron CG7367 -,Cka + chr2L 8034716 intron,intron CG7367 -,Cka + chr2L_7_8030001 chr2L_8030001 RAL-819 288 chr2L 8044071 8044131 chr2L 8044175 8044235 50 99 8.0 12.5 10.2 4.5 164 chr2L 8044071 exon CG7466 + chr2L 8044153 intron CG7466 + chr2L 8044235 intron CG7466 + chr2L_50_8040001 chr2L_8040001 RAL-819 289 chr2L 8167686 8167742 chr2L 8167790 8167845 53 102 13.0 8.5 10.8 4.5 159 chr2L 8167686 intron Piezo + chr2L 8167766 intron Piezo + chr2L 8167845 intron Piezo + chr2L_53_8165001 chr2L_8165001 RAL-819 290 chr2L 8230292 8230346 chr2L 8230401 8230451 24 106 9.0 11.0 10.0 2.2 159 chr2L 8230292 5` UTR Pvr - chr2L 8230372 intron Pvr - chr2L 8230451 intron Pvr - chr2L_24_8230001 chr2L_8230001 RAL-819 291 chr2L 8231913 8231916 chr2L 8232021 8232024 4 108 37.5 0.0 18.8 0.2 111 chr2L 8231913 intron Pvr - chr2L 8231968 intron Pvr - chr2L 8232024 intron Pvr - chr2L_4_8230001 chr2L_8230001 RAL-819 292 chr2L 8231927 8232020 chr2L 8232023 8232123 15 128 0.0 0.0 0.0 15.0 196 chr2L 8231927 intron Pvr - chr2L 8232025 intron Pvr - chr2L 8232123 intron Pvr - chr2L_15_8230001 chr2L_8230001 RAL-819 293 chr2L 8244706 8244752 chr2L 8244853 8244899 51 147 5.0 11.0 8.0 5.7 193 chr2L 8244706 intron CG8086 - chr2L 8244802 intron CG8086 - chr2L 8244899 intron CG8086 - chr2L_51_8240001 chr2L_8240001 RAL-819 294 chr2L 8266181 8266230 chr2L 8266340 8266389 13 159 4.5 8.5 6.5 1.7 208 chr2L 8266181 intron Btk29A - chr2L 8266285 intron Btk29A - chr2L 8266389 intron Btk29A - chr2L_13_8265001 chr2L_8265001 RAL-819 295 chr2L 8291470 8291528 chr2L 8291634 8291692 36 162 6.5 12.0 9.2 3.5 222 chr2L 8291470 intron Btk29A - chr2L 8291581 intron Btk29A - chr2L 8291692 intron Btk29A - chr2L_36_8290001 chr2L_8290001 RAL-819 296 chr2L 8323675 8323687 chr2L 8323800 8323812 14 123 35.5 15.0 25.2 0.5 137 chr2L 8323675 intron CG7781 - chr2L 8323744 intron CG7781 - chr2L 8323812 intron CG7781 - chr2L_14_8320001 chr2L_8320001 RAL-819 297 chr2L 8323689 8323732 chr2L 8323798 8323857 40 118 15.5 12.0 13.8 2.7 168 chr2L 8323689 intron CG7781 - chr2L 8323773 intron CG7781 - chr2L 8323857 intron CG7781 - chr2L_40_8320001 chr2L_8320001 RAL-819 298 chr2L 8331529 8331542 chr2L 8331633 8331646 12 104 17.0 0.0 8.5 1.3 117 chr2L 8331529 intron CG14275 + chr2L 8331588 intron CG14275 + chr2L 8331646 intron CG14275 + chr2L_12_8330001 chr2L_8330001 RAL-819 299 chr2L 8336927 8336967 chr2L 8337031 8337071 17 103 1.5 18.5 10.0 1.5 144 chr2L 8336927 intergenic not near genes chr2L 8336999 intergenic not near genes chr2L 8337071 intergenic not near genes chr2L_17_8335001 chr2L_8335001 RAL-819 300 chr2L 8443834 8443837 chr2L 8444005 8444008 4 171 33.0 28.5 30.8 0.1 174 chr2L 8443834 exon CG31897 + chr2L 8443921 exon CG31897 + chr2L 8444008 exon CG31897 + chr2L_4_8440001 chr2L_8440001 RAL-819 301 chr2L 8452172 8452182 chr2L 8461998 8462008 roo 7 9825 31.5 12.5 22.0 0.3 9836 chr2L 8452172 intron fu12 - chr2L 8457090 intron fu12 - chr2L 8462008 intron fu12 - chr2L_7_8455001 chr2L_8455001 RAL-819 302 chr2L 8452186 8452229 chr2L 8461997 8462055 roo 45 9819 9.0 12.0 10.5 3.9 9869 chr2L 8452186 intron fu12 - chr2L 8457120 intron fu12 - chr2L 8462055 intron fu12 - chr2L_45_8455001 chr2L_8455001 RAL-819 303 chr2L 8479754 8479811 chr2L 8479864 8479921 57 109 15.0 13.5 14.2 3.8 167 chr2L 8479754 intron d + chr2L 8479838 intron d + chr2L 8479921 intron d + chr2L_57_8475001 chr2L_8475001 RAL-819 304 chr2L 8498180 8498238 chr2L 8498286 8498344 50 105 9.5 12.5 11.0 4.2 164 chr2L 8498180 intron Dh31 - chr2L 8498262 intron Dh31 - chr2L 8498344 intron Dh31 - chr2L_50_8495001 chr2L_8495001 RAL-819 305 chr2L 8503582 8503623 chr2L 8503690 8503731 27 108 5.5 14.5 10.0 2.5 149 chr2L 8503582 intron Dh31 - chr2L 8503656 intron Dh31 - chr2L 8503731 intron Dh31 - chr2L_27_8500001 chr2L_8500001 RAL-819 306 chr2L 8510110 8510172 chr2L 8510224 8510286 30 111 10.5 9.0 9.8 2.8 176 chr2L 8510110 exon CG13096 - chr2L 8510198 intron CG13096 - chr2L 8510286 intron CG13096 - chr2L_30_8510001 chr2L_8510001 RAL-819 307 chr2L 8538144 8538189 chr2L 8538240 8538300 9 102 14.0 2.0 8.0 1.0 156 chr2L 8538144 intron CG17834 + chr2L 8538222 intron CG17834 + chr2L 8538300 intron CG17834 + chr2L_9_8535001 chr2L_8535001 RAL-819 308 chr2L 8594441 8594496 chr2L 8601520 8601568 297 22 7078 13.5 0.0 6.8 2.8 7127 chr2L 8594441 intron,3` UTR Sema-1a +,CR43855 - chr2L 8598004 intron Sema-1a + chr2L 8601568 intron Sema-1a + chr2L_22_8595001 chr2L_8595001 RAL-819 309 chr2L 8640304 8640311 chr2L 12355483 12355484 5 3715178 15.5 54.0 34.8 0.1 3715180 chr2L 8640304 intron Sema-1a + chr2L 10497894 exon Myo31DF - chr2L 12355484 intron bru-2 + chr2L_5_10495001 chr2L_10495001 RAL-819 310 chr2L 8644265 8644280 chr2L 8644361 8644382 13 101 5.0 25.0 15.0 0.8 117 chr2L 8644265 intron Sema-1a + chr2L 8644324 intron Sema-1a + chr2L 8644382 intron Sema-1a + chr2L_13_8640001 chr2L_8640001 RAL-819 311 chr2L 8692748 8692790 chr2L 8692890 8692932 37 142 22.0 8.5 15.2 2.3 184 chr2L 8692748 intron Hnf4 - chr2L 8692840 intron Hnf4 - chr2L 8692932 intron Hnf4 - chr2L_37_8690001 chr2L_8690001 RAL-819 312 chr2L 8723092 8723104 chr2L 8731494 8731503 Tirant 9 8402 15.0 12.5 13.8 0.6 8411 chr2L 8723092 intron raw - chr2L 8727298 intron raw - chr2L 8731503 intron raw - chr2L_9_8725001 chr2L_8725001 RAL-819 313 chr2L 8723105 8723142 chr2L 8731492 8731543 Tirant 26 8400 7.0 11.0 9.0 2.6 8438 chr2L 8723105 intron raw - chr2L 8727324 intron raw - chr2L 8731543 intron raw - chr2L_26_8725001 chr2L_8725001 RAL-819 314 chr2L 8736241 8736244 chr2L 8736346 8736349 4 105 0.5 12.0 6.2 0.6 108 chr2L 8736241 intron raw - chr2L 8736295 intron raw - chr2L 8736349 intron raw - chr2L_4_8735001 chr2L_8735001 RAL-819 315 chr2L 8736245 8736258 chr2L 8736345 8736363 7 104 0.5 12.0 6.2 1.0 118 chr2L 8736245 intron raw - chr2L 8736304 intron raw - chr2L 8736363 intron raw - chr2L_7_8735001 chr2L_8735001 RAL-819 316 chr2L 8742748 8742947 chr2L 8742849 8743048 16 100 0.0 0.0 0.0 16.0 300 chr2L 8742748 intergenic not near genes chr2L 8742898 intergenic not near genes chr2L 8743048 intergenic not near genes chr2L_16_8740001 chr2L_8740001 RAL-819 317 chr2L 8788731 8788788 chr2L 8788845 8788900 30 114 4.5 7.0 5.8 4.4 169 chr2L 8788731 intergenic not near genes chr2L 8788816 intergenic not near genes chr2L 8788900 intergenic not near genes chr2L_30_8785001 chr2L_8785001 RAL-819 318 chr2L 8892005 8892054 chr2L 8892109 8892157 28 102 5.5 10.5 8.0 3.1 152 chr2L 8892005 3` UTR CG42713 + chr2L 8892081 3` UTR CG42713 + chr2L 8892157 3` UTR CG42713 + chr2L_28_8890001 chr2L_8890001 RAL-819 319 chr2L 8900357 8900382 chr2L 8900460 8900478 12 102 19.5 8.5 14.0 0.8 121 chr2L 8900357 intron CG34398 + chr2L 8900418 intron CG34398 + chr2L 8900478 intron CG34398 + chr2L_12_8900001 chr2L_8900001 RAL-819 320 chr2L 8900384 8900414 chr2L 8900458 8900517 22 99 9.5 8.0 8.8 2.2 133 chr2L 8900384 intron CG34398 + chr2L 8900450 intron CG34398 + chr2L 8900517 intron CG34398 + chr2L_22_8900001 chr2L_8900001 RAL-819 321 chr2L 8939646 8939695 chr2L 8939745 8939800 39 104 11.5 13.5 12.5 2.9 154 chr2L 8939646 3` UTR Tsp29Fb + chr2L 8939723 3` UTR Tsp29Fb + chr2L 8939800 3` UTR CG9510 - chr2L_39_8935001 chr2L_8935001 RAL-819 322 chr2L 8956200 8956232 chr2L 8956302 8956334 15 101 10.0 0.0 5.0 2.5 134 chr2L 8956200 intron CG31886 - chr2L 8956267 intron CG31886 - chr2L 8956334 intron CG31886 - chr2L_15_8955001 chr2L_8955001 RAL-819 323 chr2L 9000258 9000311 chr2L 9007793 9007846 roo 41 7533 12.0 0.5 6.2 5.7 7588 chr2L 9000258 intergenic Try29F + chr2L 9004052 intergenic not near genes chr2L 9007846 intergenic not near genes chr2L_41_9000001 chr2L_9000001 RAL-819 324 chr2L 9025796 9025850 chr2L 9025905 9025959 55 106 17.5 11.5 14.5 3.5 163 chr2L 9025796 intron,3` UTR CG9582 -,CR44352 - chr2L 9025878 intron,3` UTR CG9582 -,CR44352 - chr2L 9025959 intron,3` UTR CG9582 -,CR44352 - chr2L_55_9025001 chr2L_9025001 RAL-819 325 chr2L 9040004 9040060 chr2L 9040116 9040172 29 112 10.5 5.5 8.0 3.2 168 chr2L 9040004 intergenic not near genes chr2L 9040088 intergenic not near genes chr2L 9040172 intergenic not near genes chr2L_29_9040001 chr2L_9040001 RAL-819 326 chr2L 9044078 9044128 chr2L 9044201 9044260 20 124 1.5 11.0 6.2 2.8 182 chr2L 9044078 intergenic not near genes chr2L 9044169 intergenic not near genes chr2L 9044260 intergenic not near genes chr2L_20_9040001 chr2L_9040001 RAL-819 327 chr2L 9053384 9053429 chr2L 9053644 9053689 36 259 11.5 0.0 5.8 5.3 305 chr2L 9053384 exon CG31708 - chr2L 9053536 intron CG31708 - chr2L 9053689 intron CG31708 - chr2L_36_9050001 chr2L_9050001 RAL-819 328 chr2L 9068148 9068207 chr2L 9068250 9068309 28 101 6.0 8.5 7.2 3.4 161 chr2L 9068148 intron CG31708 - chr2L 9068228 intron CG31708 - chr2L 9068309 intron CG31708 - chr2L_28_9065001 chr2L_9065001 RAL-819 329 chr2L 9084336 9084340 chr2L 16217660 16217660 26 7133321 54.0 56.0 55.0 0.5 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_26_12650001 chr2L_12650001 RAL-819 330 chr2L 9085940 9085946 chr2L 9086048 9086054 4 108 0.0 27.5 13.8 0.3 114 chr2L 9085940 intron Toll-4 + chr2L 9085997 intron Toll-4 + chr2L 9086054 intron Toll-4 + chr2L_4_9085001 chr2L_9085001 RAL-819 331 chr2L 9095546 9095604 chr2L 9095658 9095687 48 109 11.0 15.0 13.0 3.4 141 chr2L 9095546 intergenic not near genes chr2L 9095616 intergenic not near genes chr2L 9095687 intergenic not near genes chr2L_48_9095001 chr2L_9095001 RAL-819 332 chr2L 9115045 9115095 chr2L 9115250 9115306 25 208 11.5 10.5 11.0 2.1 261 chr2L 9115045 intergenic not near genes chr2L 9115176 intergenic not near genes chr2L 9115306 intergenic not near genes chr2L_25_9115001 chr2L_9115001 RAL-819 333 chr2L 9202037 9202089 chr2L 9202131 9202180 57 91 9.0 27.5 18.2 3.0 143 chr2L 9202037 intron tai + chr2L 9202108 intron tai + chr2L 9202180 intron tai + chr2L_57_9200001 chr2L_9200001 RAL-819 334 chr2L 9217967 9218002 chr2L 9222779 9222822 Doc 11 4813 7.0 0.5 3.8 2.3 4855 chr2L 9217967 intron tai + chr2L 9220394 intron tai + chr2L 9222822 intron tai + chr2L_11_9220001 chr2L_9220001 RAL-819 335 chr2L 9227203 9227241 chr2L 9227311 9227330 9 102 14.0 13.0 13.5 0.6 127 chr2L 9227203 intron tai + chr2L 9227266 intron tai + chr2L 9227330 intron tai + chr2L_9_9225001 chr2L_9225001 RAL-819 336 chr2L 9267799 9267857 chr2L 9268009 9268067 34 209 11.5 12.5 12.0 2.6 268 chr2L 9267799 intron Ggamma30A + chr2L 9267933 intron Ggamma30A + chr2L 9268067 intron Ggamma30A + chr2L_34_9265001 chr2L_9265001 RAL-819 337 chr2L 9268181 9268232 chr2L 9268283 9268331 37 99 6.0 12.5 9.2 3.6 150 chr2L 9268181 intron Ggamma30A + chr2L 9268256 intron Ggamma30A + chr2L 9268331 intron Ggamma30A + chr2L_37_9265001 chr2L_9265001 RAL-819 338 chr2L 9278865 9278920 chr2L 9278980 9279034 54 112 12.0 0.0 6.0 7.7 169 chr2L 9278865 intron Ggamma30A + chr2L 9278950 intron Ggamma30A + chr2L 9279034 intron Ggamma30A + chr2L_54_9275001 chr2L_9275001 RAL-819 339 chr2L 9283194 9283435 chr2L 9283317 9283542 47 109 2.0 0.0 1.0 23.5 348 chr2L 9283194 intron Ggamma30A + chr2L 9283368 intron Ggamma30A + chr2L 9283542 intron Ggamma30A + chr2L_47_9280001 chr2L_9280001 RAL-819 340 chr2L 9300675 9300695 chr2L 9300785 9300800 9 109 0.0 0.0 0.0 9.0 125 chr2L 9300675 3` UTR Ggamma30A + chr2L 9300738 3` UTR Ggamma30A + chr2L 9300800 3` UTR Ggamma30A + chr2L_9_9300001 chr2L_9300001 RAL-819 341 chr2L 9337885 9337930 chr2L 9337987 9338032 20 101 6.5 14.5 10.5 1.7 147 chr2L 9337885 intron Eaat1 + chr2L 9337958 intron Eaat1 + chr2L 9338032 intron Eaat1 + chr2L_20_9335001 chr2L_9335001 RAL-819 342 chr2L 9379452 9379490 chr2L 9379558 9379596 44 104 12.0 20.0 16.0 2.6 144 chr2L 9379452 intron Shawl - chr2L 9379524 intron Shawl - chr2L 9379596 intron Shawl - chr2L_44_9375001 chr2L_9375001 RAL-819 343 chr2L 9380218 9380254 chr2L 9380338 9380374 21 120 19.5 12.0 15.8 1.2 156 chr2L 9380218 exon Shawl - chr2L 9380296 intron Shawl - chr2L 9380374 intron Shawl - chr2L_21_9380001 chr2L_9380001 RAL-819 344 chr2L 9387227 9387234 chr2L 9387350 9387357 6 123 28.0 7.0 17.5 0.3 130 chr2L 9387227 intron Shawl - chr2L 9387292 intron Shawl - chr2L 9387357 intron Shawl - chr2L_6_9385001 chr2L_9385001 RAL-819 345 chr2L 9387235 9387278 chr2L 9387348 9387401 19 120 9.0 6.0 7.5 2.2 166 chr2L 9387235 intron Shawl - chr2L 9387318 intron Shawl - chr2L 9387401 intron,5` UTR Shawl -,Aldh + chr2L_19_9385001 chr2L_9385001 RAL-819 346 chr2L 9391558 9391613 chr2L 9391693 9391743 52 133 15.5 16.0 15.8 3.1 185 chr2L 9391558 intron,3` UTR Shawl -,Aldh + chr2L 9391650 intron Shawl - chr2L 9391743 intron Shawl - chr2L_52_9390001 chr2L_9390001 RAL-819 347 chr2L 9393470 9393527 chr2L 9396463 9396519 jockey 38 2989 4.0 11.0 7.5 4.5 3049 chr2L 9393470 intron Shawl - chr2L 9394994 intron Shawl - chr2L 9396519 intron Shawl - chr2L_38_9390001 chr2L_9390001 RAL-819 348 chr2L 9407882 9407906 chr2L 9407989 9408013 22 106 10.5 17.0 13.8 1.5 131 chr2L 9407882 intron Shawl - chr2L 9407948 intron Shawl - chr2L 9408013 intron Shawl - chr2L_22_9405001 chr2L_9405001 RAL-819 349 chr2L 9417679 9417737 chr2L 9418019 9418077 30 338 10.0 9.0 9.5 2.9 398 chr2L 9417679 intron Mco1 + chr2L 9417878 intron Mco1 + chr2L 9418077 intron Mco1 + chr2L_30_9415001 chr2L_9415001 RAL-819 350 chr2L 9454951 9455007 chr2L 9455078 9455134 51 126 14.5 11.5 13.0 3.6 183 chr2L 9454951 intron numb + chr2L 9455042 intron numb + chr2L 9455134 intron numb + chr2L_51_9455001 chr2L_9455001 RAL-819 351 chr2L 9456906 9456955 chr2L 9457012 9457061 15 105 6.5 11.0 8.8 1.5 155 chr2L 9456906 intron numb + chr2L 9456984 intron numb + chr2L 9457061 intron numb + chr2L_15_9455001 chr2L_9455001 RAL-819 352 chr2L 9460730 9460785 chr2L 9460841 9460905 24 114 9.0 0.0 4.5 4.4 175 chr2L 9460730 exon numb + chr2L 9460818 intron numb + chr2L 9460905 intron numb + chr2L_24_9460001 chr2L_9460001 RAL-819 353 chr2L 9488548 9488577 chr2L 9488654 9488683 23 100 25.0 42.0 33.5 0.7 135 chr2L 9488548 intergenic not near genes chr2L 9488616 intergenic not near genes chr2L 9488683 intergenic not near genes chr2L_23_9485001 chr2L_9485001 RAL-819 354 chr2L 9490495 9490552 chr2L 9490600 9490657 51 101 8.0 7.5 7.8 5.8 162 chr2L 9490495 intergenic not near genes chr2L 9490576 intergenic not near genes chr2L 9490657 intergenic not near genes chr2L_51_9490001 chr2L_9490001 RAL-819 355 chr2L 9619471 9619522 chr2L 9619833 9619884 27 361 5.5 7.5 6.5 3.6 413 chr2L 9619471 intron GlcAT-S + chr2L 9619678 intron GlcAT-S + chr2L 9619884 intron GlcAT-S + chr2L_27_9615001 chr2L_9615001 RAL-819 356 chr2L 9719749 9719780 chr2L 9719857 9719888 17 106 0.0 5.0 2.5 4.9 139 chr2L 9719749 intron Nckx30C - chr2L 9719818 intron Nckx30C - chr2L 9719888 intron Nckx30C - chr2L_17_9715001 chr2L_9715001 RAL-819 357 chr2L 9730950 9731006 chr2L 9731058 9731114 33 107 11.5 14.0 12.8 2.4 164 chr2L 9730950 intron Nckx30C - chr2L 9731032 intron Nckx30C - chr2L 9731114 intron Nckx30C - chr2L_33_9730001 chr2L_9730001 RAL-819 358 chr2L 9775961 9776010 chr2L 9776068 9776105 30 106 8.5 14.0 11.2 2.5 144 chr2L 9775961 intergenic not near genes chr2L 9776033 intergenic not near genes chr2L 9776105 intergenic not near genes chr2L_30_9775001 chr2L_9775001 RAL-819 359 chr2L 9862343 9862358 chr2L 9862476 9862491 7 133 0.0 30.5 15.2 0.4 148 chr2L 9862343 intron nAChRalpha6 - chr2L 9862417 intron nAChRalpha6 - chr2L 9862491 intron nAChRalpha6 - chr2L_7_9860001 chr2L_9860001 RAL-819 360 chr2L 9902367 9902372 chr2L 9902727 9902732 6 359 209.0 2.5 105.8 0.1 365 chr2L 9902367 exon Muc30E - chr2L 9902550 exon Muc30E - chr2L 9902732 exon Muc30E - chr2L_6_9900001 chr2L_9900001 RAL-819 361 chr2L 9972851 9972892 chr2L 9972953 9972999 37 107 10.5 15.0 12.8 2.7 148 chr2L 9972851 intergenic not near genes chr2L 9972925 intergenic not near genes chr2L 9972999 intergenic not near genes chr2L_37_9970001 chr2L_9970001 RAL-819 362 chr2L 9973702 9973757 chr2L 9980846 9980901 HMS-Beagle 62 7139 21.5 18.0 19.8 3.0 7199 chr2L 9973702 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980901 intergenic not near genes chr2L_62_9975001 chr2L_9975001 RAL-819 363 chr2L 9986329 9986380 chr2L 9986444 9986500 35 113 7.5 11.0 9.2 3.4 171 chr2L 9986329 intron bib + chr2L 9986414 intron bib + chr2L 9986500 intron bib + chr2L_35_9985001 chr2L_9985001 RAL-819 364 chr2L 10024926 10024975 chr2L 10025059 10025108 45 132 8.0 9.5 8.8 4.6 182 chr2L 10024926 intergenic not near genes chr2L 10025017 intergenic not near genes chr2L 10025108 intergenic not near genes chr2L_45_10025001 chr2L_10025001 RAL-819 365 chr2L 10051700 10051753 chr2L 10051809 10051863 50 100 15.5 15.0 15.2 3.1 163 chr2L 10051700 5` UTR CR44874 + chr2L 10051782 5` UTR CR44874 + chr2L 10051863 5` UTR CR44874 + chr2L_50_10050001 chr2L_10050001 RAL-819 366 chr2L 10095606 10095664 chr2L 10095711 10095734 40 103 17.5 13.0 15.2 2.5 128 chr2L 10095606 intron CG44153 - chr2L 10095670 intron CG44153 - chr2L 10095734 intron CG44153 - chr2L_40_10095001 chr2L_10095001 RAL-819 367 chr2L 10138164 10138188 chr2L 10143435 10143444 Rt1c 18 5268 17.0 28.5 22.8 0.8 5280 chr2L 10138164 intron CG44153 - chr2L 10140804 intron CG44153 - chr2L 10143444 intron CG44153 - chr2L_18_10140001 chr2L_10140001 RAL-819 368 chr2L 10156295 10156354 chr2L 10163790 10163845 blood 45 7492 13.0 12.5 12.8 3.3 7550 chr2L 10156295 intron,3` UTR CG44153 -,CG4839 + chr2L 10160070 intron CG44153 - chr2L 10163845 intron CG44153 - chr2L_45_10160001 chr2L_10160001 RAL-819 369 chr2L 10176024 10176024 chr2L 16071771 16071771 9 5895747 59.0 60.5 59.8 0.1 5895747 chr2L 10176024 intron CG44153 - chr2L 13123898 intergenic not near genes chr2L 16071771 intron beat-Ia + chr2L_9_13120001 chr2L_13120001 RAL-819 370 chr2L 10176518 10176572 chr2L 10176826 10176880 39 304 9.5 9.0 9.2 3.8 362 chr2L 10176518 intron CG44153 - chr2L 10176699 intron CG44153 - chr2L 10176880 intron CG44153 - chr2L_39_10175001 chr2L_10175001 RAL-819 371 chr2L 10177386 10177392 chr2L 10177486 10177497 5 102 7.5 8.5 8.0 0.6 111 chr2L 10177386 intron CG44153 - chr2L 10177442 intron CG44153 - chr2L 10177497 intron CG44153 - chr2L_5_10175001 chr2L_10175001 RAL-819 372 chr2L 10180561 10180574 chr2L 10180673 10180686 7 112 29.0 0.0 14.5 0.5 125 chr2L 10180561 intergenic CG44153 - chr2L 10180624 intergenic CG44153 - chr2L 10180686 intergenic CG44153 - chr2L_7_10180001 chr2L_10180001 RAL-819 373 chr2L 10180575 10180606 chr2L 10180671 10180703 19 95 9.5 0.0 4.8 3.3 128 chr2L 10180575 intergenic CG44153 - chr2L 10180639 intergenic CG44153 - chr2L 10180703 intergenic CG44153 - chr2L_19_10180001 chr2L_10180001 RAL-819 374 chr2L 10209822 10209848 chr2L 10209924 10209950 17 101 11.5 4.5 8.0 1.9 128 chr2L 10209822 intergenic CG5727 -,CR44845 +,CG5731 - chr2L 10209886 3` UTR CG5727 - chr2L 10209950 3` UTR CG5727 - chr2L_17_10205001 chr2L_10205001 RAL-819 375 chr2L 10258414 10258439 chr2L 10258524 10258549 9 109 5.5 11.5 8.5 0.9 135 chr2L 10258414 intron Pten - chr2L 10258482 intron Pten - chr2L 10258549 exon Pten - chr2L_9_10255001 chr2L_10255001 RAL-819 376 chr2L 10294656 10294688 chr2L 10294762 10294799 13 110 13.0 7.0 10.0 1.2 143 chr2L 10294656 intron Hand - chr2L 10294728 intron Hand - chr2L 10294799 intron Hand - chr2L_13_10290001 chr2L_10290001 RAL-819 377 chr2L 10421280 10421307 chr2L 10421394 10421416 10 112 36.5 21.5 29.0 0.3 136 chr2L 10421280 exon pie - chr2L 10421348 exon pie - chr2L 10421416 exon pie - chr2L_10_10420001 chr2L_10420001 RAL-819 378 chr2L 10421312 10421322 chr2L 10421381 10421414 9 78 30.0 14.5 22.2 0.4 102 chr2L 10421312 exon pie - chr2L 10421363 exon pie - chr2L 10421414 exon pie - chr2L_9_10420001 chr2L_10420001 RAL-819 379 chr2L 10447072 10447089 chr2L 10447207 10447207 10 133 7.5 15.0 11.2 0.8 135 chr2L 10447072 intron loh + chr2L 10447140 intron loh + chr2L 10447207 intron loh + chr2L_10_10445001 chr2L_10445001 RAL-819 380 chr2L 10458188 10458215 chr2L 10458309 10458336 23 120 0.0 12.0 6.0 3.3 148 chr2L 10458188 intron LM408 + chr2L 10458262 intron LM408 + chr2L 10458336 intron LM408 + chr2L_23_10455001 chr2L_10455001 RAL-819 381 chr2L 10515336 10515390 chr2L 10515454 10515490 45 115 14.5 13.5 14.0 3.0 154 chr2L 10515336 intron,intron CG45083 -,Fatp - chr2L 10515413 intron,intron CG45083 -,Fatp - chr2L 10515490 intron,intron CG45083 -,Fatp - chr2L_45_10515001 chr2L_10515001 RAL-819 382 chr2L 10540845 10540880 chr2L 10540948 10540983 22 102 7.5 13.5 10.5 1.9 138 chr2L 10540845 intergenic not near genes chr2L 10540914 intergenic not near genes chr2L 10540983 intergenic not near genes chr2L_22_10540001 chr2L_10540001 RAL-819 383 chr2L 10572680 10572709 chr2L 10572786 10572790 19 103 27.0 13.0 20.0 0.9 110 chr2L 10572680 intron Trim9 + chr2L 10572735 intron Trim9 + chr2L 10572790 intron Trim9 + chr2L_19_10570001 chr2L_10570001 RAL-819 384 chr2L 10572710 10572732 chr2L 10572784 10572831 23 102 14.5 12.5 13.5 1.6 121 chr2L 10572710 intron Trim9 + chr2L 10572770 intron Trim9 + chr2L 10572831 intron Trim9 + chr2L_23_10570001 chr2L_10570001 RAL-819 385 chr2L 10580767 10580823 chr2L 10580873 10580923 62 96 5.5 13.0 9.2 6.1 156 chr2L 10580767 intron Trim9 + chr2L 10580845 intron Trim9 + chr2L 10580923 intron Trim9 + chr2L_62_10580001 chr2L_10580001 RAL-819 386 chr2L 10592816 10592872 chr2L 10600503 10600559 opus 46 7685 7.0 16.5 11.8 3.6 7743 chr2L 10592816 intron Trim9 + chr2L 10596688 intron Trim9 + chr2L 10600559 intron Trim9 + chr2L_46_10595001 chr2L_10595001 RAL-819 387 chr2L 10631183 10631219 chr2L 10631340 10631375 20 157 15.5 0.0 7.8 2.3 192 chr2L 10631183 intron CG7329 - chr2L 10631279 intron CG7329 - chr2L 10631375 intron CG7329 - chr2L_20_10630001 chr2L_10630001 RAL-819 388 chr2L 10640613 10640670 chr2L 10640727 10640784 50 112 13.0 10.0 11.5 4.0 171 chr2L 10640613 exon CG31872 + chr2L 10640698 exon CG31872 + chr2L 10640784 exon CG31872 + chr2L_50_10640001 chr2L_10640001 RAL-819 389 chr2L 10679010 10679038 chr2L 10679124 10679152 29 113 22.0 17.0 19.5 1.4 142 chr2L 10679010 exon CG17104 + chr2L 10679081 exon CG17104 + chr2L 10679152 exon CG17104 + chr2L_29_10675001 chr2L_10675001 RAL-819 390 chr2L 10698104 10698159 chr2L 10698212 10698267 43 106 6.0 9.5 7.8 4.9 163 chr2L 10698104 5` UTR CR44181 + chr2L 10698186 5` UTR CR44181 + chr2L 10698267 intergenic CR44181 +,CG7300 - chr2L_43_10695001 chr2L_10695001 RAL-819 391 chr2L 10698557 10698596 chr2L 10698665 10698714 15 115 0.0 12.5 6.2 2.1 157 chr2L 10698557 intergenic CR44181 + chr2L 10698636 intergenic CR44181 + chr2L 10698714 intergenic not near genes chr2L_15_10695001 chr2L_10695001 RAL-819 392 chr2L 10704892 10704948 chr2L 10705012 10705068 24 118 8.5 10.0 9.2 2.4 176 chr2L 10704892 intron,exon Lip2 -,CG6415 + chr2L 10704980 intron Lip2 - chr2L 10705068 exon Lip2 - chr2L_24_10700001 chr2L_10700001 RAL-819 393 chr2L 10723512 10723545 chr2L 10723631 10723643 24 118 5.5 7.0 6.2 3.3 131 chr2L 10723512 intergenic not near genes chr2L 10723578 intergenic not near genes chr2L 10723643 intergenic not near genes chr2L_24_10720001 chr2L_10720001 RAL-819 394 chr2L 10785034 10785091 chr2L 10785135 10785184 58 99 18.0 16.5 17.2 3.2 150 chr2L 10785034 intron CG31869 - chr2L 10785109 intron CG31869 - chr2L 10785184 intron CG31869 - chr2L_58_10785001 chr2L_10785001 RAL-819 395 chr2L 10862832 10862875 chr2L 10864467 10864489 Rt1c 43 1631 5.5 24.0 14.8 2.7 1657 chr2L 10862832 3` UTR CR43807 - chr2L 10863660 intron CR43807 - chr2L 10864489 3` UTR CR43807 - chr2L_43_10860001 chr2L_10860001 RAL-819 396 chr2L 10876550 10876568 chr2L 10883631 10883649 297 7 7080 17.0 4.5 10.8 0.6 7099 chr2L 10876550 intergenic not near genes chr2L 10880100 intergenic not near genes chr2L 10883649 intergenic not near genes chr2L_7_10880001 chr2L_10880001 RAL-819 397 chr2L 10946930 10946948 chr2L 10956170 10956188 roo 19 9240 37.0 22.0 29.5 0.6 9258 chr2L 10946930 intron dpr2 - chr2L 10951559 intron dpr2 - chr2L 10956188 intron dpr2 - chr2L_19_10950001 chr2L_10950001 RAL-819 398 chr2L 10946949 10946977 chr2L 10956168 10956192 roo 27 9232 20.0 21.0 20.5 1.3 9243 chr2L 10946949 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_27_10950001 chr2L_10950001 RAL-819 399 chr2L 11012273 11012321 chr2L 11012386 11012433 27 110 15.0 21.0 18.0 1.4 160 chr2L 11012273 intergenic dUTPase + chr2L 11012353 intergenic dUTPase + chr2L 11012433 intergenic dUTPase + chr2L_27_11010001 chr2L_11010001 RAL-819 400 chr2L 11174614 11174659 chr2L 11174719 11174746 10 92 8.5 17.0 12.8 0.7 132 chr2L 11174614 intron Ca-beta - chr2L 11174680 intron Ca-beta - chr2L 11174746 intron Ca-beta - chr2L_10_11170001 chr2L_11170001 RAL-819 401 chr2L 11211119 11211162 chr2L 11211217 11211252 29 105 13.5 14.5 14.0 1.9 133 chr2L 11211119 intron ab + chr2L 11211186 intron ab + chr2L 11211252 intron ab + chr2L_29_11210001 chr2L_11210001 RAL-819 402 chr2L 11224033 11224091 chr2L 11224169 11224227 43 135 9.5 12.5 11.0 3.6 194 chr2L 11224033 intron ab + chr2L 11224130 intron ab + chr2L 11224227 intron ab + chr2L_43_11220001 chr2L_11220001 RAL-819 403 chr2L 11240477 11240535 chr2L 11240628 11240676 48 145 9.5 15.0 12.2 3.6 199 chr2L 11240477 intron ab + chr2L 11240576 intron ab + chr2L 11240676 intron ab + chr2L_48_11240001 chr2L_11240001 RAL-819 404 chr2L 11292353 11292408 chr2L 11292459 11292515 41 104 8.5 11.5 10.0 3.7 162 chr2L 11292353 intergenic not near genes chr2L 11292434 intergenic not near genes chr2L 11292515 intergenic not near genes chr2L_41_11290001 chr2L_11290001 RAL-819 405 chr2L 11315243 11315272 chr2L 11317672 11317695 G2 17 2428 10.5 12.0 11.2 1.4 2452 chr2L 11315243 intergenic not near genes chr2L 11316469 intergenic not near genes chr2L 11317695 intergenic not near genes chr2L_17_11315001 chr2L_11315001 RAL-819 406 chr2L 11332021 11332065 chr2L 11332152 11332166 11 123 27.0 13.0 20.0 0.5 145 chr2L 11332021 3` UTR CR44584 - chr2L 11332094 3` UTR CR44584 - chr2L 11332166 3` UTR CR44584 - chr2L_11_11330001 chr2L_11330001 RAL-819 407 chr2L 11339710 11339740 chr2L 11339812 11339842 19 99 21.0 17.5 19.2 0.9 132 chr2L 11339710 intergenic not near genes chr2L 11339776 intergenic not near genes chr2L 11339842 intergenic not near genes chr2L_19_11335001 chr2L_11335001 RAL-819 408 chr2L 11356383 11356415 chr2L 11356519 11356551 24 128 15.0 8.5 11.8 1.9 168 chr2L 11356383 intergenic not near genes chr2L 11356467 intergenic not near genes chr2L 11356551 intergenic not near genes chr2L_24_11355001 chr2L_11355001 RAL-819 409 chr2L 11356416 11356423 chr2L 11356518 11356559 13 131 14.0 8.5 11.2 1.1 143 chr2L 11356416 intergenic not near genes chr2L 11356488 intergenic not near genes chr2L 11356559 intergenic not near genes chr2L_13_11355001 chr2L_11355001 RAL-819 410 chr2L 11394243 11394293 chr2L 11394352 11394402 44 108 16.0 12.0 14.0 2.9 159 chr2L 11394243 intergenic not near genes chr2L 11394322 intergenic not near genes chr2L 11394402 intergenic not near genes chr2L_44_11390001 chr2L_11390001 RAL-819 411 chr2L 11399510 11399534 chr2L 11399612 11399635 19 102 8.5 0.0 4.2 3.7 125 chr2L 11399510 intergenic not near genes chr2L 11399572 intergenic not near genes chr2L 11399635 intergenic not near genes chr2L_19_11395001 chr2L_11395001 RAL-819 412 chr2L 11401724 11401760 chr2L 11401825 11401857 27 99 10.0 2.0 6.0 3.9 133 chr2L 11401724 intergenic not near genes chr2L 11401790 intergenic not near genes chr2L 11401857 intergenic not near genes chr2L_27_11400001 chr2L_11400001 RAL-819 413 chr2L 11428738 11428752 chr2L 11428840 11428848 10 100 17.5 2.5 10.0 0.9 110 chr2L 11428738 intergenic not near genes chr2L 11428793 intergenic not near genes chr2L 11428848 intergenic not near genes chr2L_10_11425001 chr2L_11425001 RAL-819 414 chr2L 11449335 11449340 chr2L 11449452 11449456 4 116 20.5 0.0 10.2 0.4 121 chr2L 11449335 intergenic not near genes chr2L 11449396 intergenic not near genes chr2L 11449456 intergenic not near genes chr2L_4_11445001 chr2L_11445001 RAL-819 415 chr2L 11455537 11455596 chr2L 11455647 11455690 46 106 10.5 11.0 10.8 3.9 153 chr2L 11455537 intergenic not near genes chr2L 11455614 intergenic not near genes chr2L 11455690 intergenic not near genes chr2L_46_11455001 chr2L_11455001 RAL-819 416 chr2L 11491114 11491140 chr2L 11491209 11491216 18 98 13.5 11.0 12.2 1.4 102 chr2L 11491114 intergenic not near genes chr2L 11491165 intergenic not near genes chr2L 11491216 intergenic not near genes chr2L_18_11490001 chr2L_11490001 RAL-819 417 chr2L 11491141 11491159 chr2L 11491207 11491224 13 93 7.5 10.0 8.8 1.3 83 chr2L 11491141 intergenic not near genes chr2L 11491182 intergenic not near genes chr2L 11491224 intergenic not near genes chr2L_13_11490001 chr2L_11490001 RAL-819 418 chr2L 11492987 11492996 chr2L 11493152 11493161 10 165 0.0 4.0 2.0 3.3 174 chr2L 11492987 intergenic not near genes chr2L 11493074 intergenic not near genes chr2L 11493161 intergenic not near genes chr2L_10_11490001 chr2L_11490001 RAL-819 419 chr2L 11524120 11524165 chr2L 11524228 11524282 45 107 10.0 10.5 10.2 4.0 162 chr2L 11524120 exon CG31705 - chr2L 11524201 exon CG31705 - chr2L 11524282 exon CG31705 - chr2L_45_11520001 chr2L_11520001 RAL-819 420 chr2L 11536691 11536731 chr2L 11536797 11536834 12 101 7.5 0.0 3.8 2.5 143 chr2L 11536691 exon CG43438 + chr2L 11536762 3` UTR CG43438 + chr2L 11536834 3` UTR CG43438 + chr2L_12_11535001 chr2L_11535001 RAL-819 421 chr2L 11537960 11537978 chr2L 11538078 11538079 24 112 21.5 14.5 18.0 1.3 119 chr2L 11537960 intergenic not near genes chr2L 11538020 intergenic not near genes chr2L 11538079 intergenic not near genes chr2L_24_11535001 chr2L_11535001 RAL-819 422 chr2L 11537979 11537991 chr2L 11538076 11538098 12 109 16.5 13.5 15.0 0.8 119 chr2L 11537979 intergenic not near genes chr2L 11538038 intergenic not near genes chr2L 11538098 intergenic not near genes chr2L_12_11535001 chr2L_11535001 RAL-819 423 chr2L 11537992 11538011 chr2L 11538069 11538096 16 93 7.5 10.5 9.0 1.6 104 chr2L 11537992 intergenic not near genes chr2L 11538044 intergenic not near genes chr2L 11538096 intergenic not near genes chr2L_16_11535001 chr2L_11535001 RAL-819 424 chr2L 11540569 11540614 chr2L 11547996 11548041 Tabor 23 7427 12.5 13.0 12.8 1.7 7472 chr2L 11540569 intergenic not near genes chr2L 11544305 intergenic not near genes chr2L 11548041 intergenic not near genes chr2L_23_11540001 chr2L_11540001 RAL-819 425 chr2L 11555384 11555425 chr2L 11555529 11555569 22 144 6.5 2.0 4.2 4.2 185 chr2L 11555384 intergenic not near genes chr2L 11555476 intergenic not near genes chr2L 11555569 intergenic not near genes chr2L_22_11555001 chr2L_11555001 RAL-819 426 chr2L 11563619 11563669 chr2L 11568848 11568898 copia 36 5227 13.5 14.0 13.8 2.4 5279 chr2L 11563619 intergenic not near genes chr2L 11566258 intergenic not near genes chr2L 11568898 intergenic not near genes chr2L_36_11565001 chr2L_11565001 RAL-819 427 chr2L 11608904 11608945 chr2L 11609011 11609052 34 104 18.5 11.5 15.0 2.1 148 chr2L 11608904 intron kek2 + chr2L 11608978 intron kek2 + chr2L 11609052 intron kek2 + chr2L_34_11605001 chr2L_11605001 RAL-819 428 chr2L 11614028 11614065 chr2L 11615546 11615554 hopper2 15 1509 17.5 7.0 12.2 1.1 1526 chr2L 11614028 intron kek2 + chr2L 11614791 intron kek2 + chr2L 11615554 intron kek2 + chr2L_15_11610001 chr2L_11610001 RAL-819 429 chr2L 11614068 11614084 chr2L 11615545 11615575 hopper2 24 1501 12.5 7.0 9.8 2.2 1507 chr2L 11614068 intron kek2 + chr2L 11614822 intron kek2 + chr2L 11615575 intron kek2 + chr2L_24_11610001 chr2L_11610001 RAL-819 430 chr2L 11704612 11704635 chr2L 11704713 11704734 4 98 17.5 12.0 14.8 0.3 122 chr2L 11704612 intergenic not near genes chr2L 11704673 intergenic not near genes chr2L 11704734 intergenic not near genes chr2L_4_11700001 chr2L_11700001 RAL-819 431 chr2L 11704644 11704666 chr2L 11704708 11704767 8 84 11.5 12.5 12.0 0.6 123 chr2L 11704644 intergenic not near genes chr2L 11704706 intergenic not near genes chr2L 11704767 intergenic not near genes chr2L_8_11700001 chr2L_11700001 RAL-819 432 chr2L 11713503 11713539 chr2L 11720975 11720981 blood 31 7487 9.0 12.0 10.5 2.7 7478 chr2L 11713503 intergenic not near genes chr2L 11717242 intergenic not near genes chr2L 11720981 intergenic CR44143 + chr2L_31_11715001 chr2L_11715001 RAL-819 433 chr2L 11722999 11723027 chr2L 11723331 11723364 8 333 42.0 60.0 51.0 0.2 365 chr2L 11722999 intergenic not near genes chr2L 11723182 intergenic not near genes chr2L 11723364 intergenic not near genes chr2L_8_11720001 chr2L_11720001 RAL-819 434 chr2L 11728599 11728654 chr2L 11728703 11728751 13 103 7.5 11.0 9.2 1.3 152 chr2L 11728599 intergenic not near genes chr2L 11728675 intergenic not near genes chr2L 11728751 intergenic not near genes chr2L_13_11725001 chr2L_11725001 RAL-819 435 chr2L 11765106 11765161 chr2L 11765214 11765267 45 107 11.5 17.5 14.5 2.9 161 chr2L 11765106 intergenic not near genes chr2L 11765186 intergenic not near genes chr2L 11765267 intergenic not near genes chr2L_45_11765001 chr2L_11765001 RAL-819 436 chr2L 11820401 11820468 chr2L 11820511 11820518 39 104 5.5 14.0 9.8 3.6 117 chr2L 11820401 intron Pde1c - chr2L 11820460 intron Pde1c - chr2L 11820518 intron Pde1c - chr2L_39_11820001 chr2L_11820001 RAL-819 437 chr2L 11825681 11825696 chr2L 11825785 11825800 13 104 19.5 0.0 9.8 1.2 119 chr2L 11825681 intron Pde1c - chr2L 11825740 intron Pde1c - chr2L 11825800 intron Pde1c - chr2L_13_11825001 chr2L_11825001 RAL-819 438 chr2L 11854679 11854722 chr2L 11854879 11854922 39 198 10.0 16.5 13.2 2.7 243 chr2L 11854679 intron Pde1c - chr2L 11854800 intron Pde1c - chr2L 11854922 intron Pde1c - chr2L_39_11850001 chr2L_11850001 RAL-819 439 chr2L 11856291 11856349 chr2L 11856402 11856460 15 111 0.0 8.0 4.0 3.0 169 chr2L 11856291 intron Pde1c - chr2L 11856376 intron Pde1c - chr2L 11856460 intron Pde1c - chr2L_15_11855001 chr2L_11855001 RAL-819 440 chr2L 11870942 11870945 chr2L 11871045 11871048 4 103 12.5 18.0 15.2 0.2 106 chr2L 11870942 intron Pde1c - chr2L 11870995 intron Pde1c - chr2L 11871048 intron Pde1c - chr2L_4_11870001 chr2L_11870001 RAL-819 441 chr2L 11870947 11870980 chr2L 11871025 11871083 18 102 1.0 8.5 4.8 3.1 136 chr2L 11870947 intron Pde1c - chr2L 11871015 intron Pde1c - chr2L 11871083 intron Pde1c - chr2L_18_11870001 chr2L_11870001 RAL-819 442 chr2L 11892520 11892551 chr2L 11892634 11892665 21 113 14.5 10.0 12.2 1.6 145 chr2L 11892520 intron Pde1c - chr2L 11892592 intron Pde1c - chr2L 11892665 intron Pde1c - chr2L_21_11890001 chr2L_11890001 RAL-819 443 chr2L 12026761 12026775 chr2L 12026963 12026981 8 205 6.5 0.0 3.2 1.9 220 chr2L 12026761 intergenic not near genes chr2L 12026871 intergenic not near genes chr2L 12026981 intergenic dmGlut + chr2L_8_12025001 chr2L_12025001 RAL-819 444 chr2L 12067303 12067359 chr2L 12074380 12074430 297 18 7077 8.5 8.5 8.5 1.9 7127 chr2L 12067303 intergenic not near genes chr2L 12070866 intergenic not near genes chr2L 12074430 intergenic not near genes chr2L_18_12070001 chr2L_12070001 RAL-819 445 chr2L 12132699 12132748 chr2L 12132810 12132859 27 110 0.0 9.0 4.5 4.9 160 chr2L 12132699 intron rho-6 - chr2L 12132779 intron rho-6 - chr2L 12132859 intron rho-6 - chr2L_27_12130001 chr2L_12130001 RAL-819 446 chr2L 12157590 12157605 chr2L 12157689 12157703 10 102 26.0 7.0 16.5 0.6 113 chr2L 12157590 intron CG31760 + chr2L 12157646 intron CG31760 + chr2L 12157703 intron CG31760 + chr2L_10_12155001 chr2L_12155001 RAL-819 447 chr2L 12157609 12157638 chr2L 12157688 12157712 14 96 12.0 6.5 9.2 1.4 103 chr2L 12157609 intron CG31760 + chr2L 12157660 intron CG31760 + chr2L 12157712 intron CG31760 + chr2L_14_12155001 chr2L_12155001 RAL-819 448 chr2L 12210020 12210047 chr2L 12210134 12210161 23 113 10.5 17.5 14.0 1.5 141 chr2L 12210020 intron aret + chr2L 12210090 intron aret + chr2L 12210161 intron aret + chr2L_23_12210001 chr2L_12210001 RAL-819 449 chr2L 12256234 12256287 chr2L 12256364 12256415 21 129 6.5 13.5 10.0 1.9 181 chr2L 12256234 intron aret + chr2L 12256324 intron aret + chr2L 12256415 intron aret + chr2L_21_12255001 chr2L_12255001 RAL-819 450 chr2L 12262836 12262850 chr2L 12262945 12262958 12 109 2.0 16.5 9.2 1.2 122 chr2L 12262836 intron aret + chr2L 12262897 intron aret + chr2L 12262958 intron aret + chr2L_12_12260001 chr2L_12260001 RAL-819 451 chr2L 12262852 12262869 chr2L 12262940 12262968 11 106 2.0 16.0 9.0 1.1 116 chr2L 12262852 intron aret + chr2L 12262910 intron aret + chr2L 12262968 intron aret + chr2L_11_12260001 chr2L_12260001 RAL-819 452 chr2L 12266081 12266087 chr2L 12266188 12266194 5 107 29.5 12.0 20.8 0.2 113 chr2L 12266081 intron aret + chr2L 12266138 intron aret + chr2L 12266194 intron aret + chr2L_5_12265001 chr2L_12265001 RAL-819 453 chr2L 12266088 12266134 chr2L 12266183 12266241 45 105 7.0 10.0 8.5 4.7 153 chr2L 12266088 intron aret + chr2L 12266164 intron aret + chr2L 12266241 intron aret + chr2L_45_12265001 chr2L_12265001 RAL-819 454 chr2L 12266713 12266738 chr2L 12266861 12266871 13 143 20.5 1.0 10.8 1.1 158 chr2L 12266713 intron aret + chr2L 12266792 intron aret + chr2L 12266871 intron aret + chr2L_13_12265001 chr2L_12265001 RAL-819 455 chr2L 12269386 12269399 chr2L 12269489 12269491 7 101 12.0 15.5 13.8 0.5 105 chr2L 12269386 intron aret + chr2L 12269438 intron aret + chr2L 12269491 intron aret + chr2L_7_12265001 chr2L_12265001 RAL-819 456 chr2L 12271387 12271414 chr2L 12271526 12271553 27 138 10.5 26.5 18.5 1.4 166 chr2L 12271387 intron aret + chr2L 12271470 intron aret + chr2L 12271553 intron aret + chr2L_27_12270001 chr2L_12270001 RAL-819 457 chr2L 12272136 12272176 chr2L 12272239 12272247 6 98 5.5 7.5 6.5 0.8 111 chr2L 12272136 intron aret + chr2L 12272192 intron aret + chr2L 12272247 intron aret + chr2L_6_12270001 chr2L_12270001 RAL-819 458 chr2L 12294227 12294279 chr2L 12294334 12294334 23 104 8.0 11.0 9.5 2.2 107 chr2L 12294227 intron aret + chr2L 12294280 intron aret + chr2L 12294334 intron aret + chr2L_23_12290001 chr2L_12290001 RAL-819 459 chr2L 12347351 12347373 chr2L 12347457 12347474 16 106 22.0 0.0 11.0 1.3 123 chr2L 12347351 intron bru-2 + chr2L 12347412 intron bru-2 + chr2L 12347474 intron bru-2 + chr2L_16_12345001 chr2L_12345001 RAL-819 460 chr2L 12347374 12347390 chr2L 12347454 12347461 5 78 19.5 0.0 9.8 0.5 87 chr2L 12347374 intron bru-2 + chr2L 12347418 intron bru-2 + chr2L 12347461 intron bru-2 + chr2L_5_12345001 chr2L_12345001 RAL-819 461 chr2L 12394939 12394998 chr2L 12395058 12395135 30 136 6.5 0.0 3.2 7.1 196 chr2L 12394939 intron bru-2 + chr2L 12395037 intron bru-2 + chr2L 12395135 intron bru-2 + chr2L_30_12395001 chr2L_12395001 RAL-819 462 chr2L 12423724 12423751 chr2L 12423833 12423860 15 105 12.5 14.5 13.5 1.0 136 chr2L 12423724 intergenic vir-1 - chr2L 12423792 intergenic vir-1 - chr2L 12423860 intergenic vir-1 - chr2L_15_12420001 chr2L_12420001 RAL-819 463 chr2L 12423752 12423764 chr2L 12423831 12423870 6 99 8.5 12.5 10.5 0.5 118 chr2L 12423752 intergenic vir-1 - chr2L 12423811 intergenic vir-1 - chr2L 12423870 intergenic vir-1 - chr2L_6_12420001 chr2L_12420001 RAL-819 464 chr2L 12479517 12479563 chr2L 12479620 12479666 27 102 10.5 8.5 9.5 2.6 149 chr2L 12479517 intron bun - chr2L 12479592 intron bun - chr2L 12479666 intron bun - chr2L_27_12475001 chr2L_12475001 RAL-819 465 chr2L 12481354 12481405 chr2L 12481461 12481512 16 107 3.0 6.5 4.8 2.8 158 chr2L 12481354 intron bun - chr2L 12481433 intron bun - chr2L 12481512 intron bun - chr2L_16_12480001 chr2L_12480001 RAL-819 466 chr2L 12487871 12487919 chr2L 12487967 12488011 36 103 8.5 11.0 9.8 3.3 140 chr2L 12487871 intron bun - chr2L 12487941 intron bun - chr2L 12488011 intron bun - chr2L_36_12485001 chr2L_12485001 RAL-819 467 chr2L 12515620 12515676 chr2L 12515812 12515868 31 189 6.0 8.5 7.2 3.8 248 chr2L 12515620 intron bun - chr2L 12515744 intron bun - chr2L 12515868 intron bun - chr2L_31_12515001 chr2L_12515001 RAL-819 468 chr2L 12529220 12529441 chr2L 12529378 12529525 51 128 0.0 0.5 0.2 42.5 305 chr2L 12529220 intron bun - chr2L 12529372 intron bun - chr2L 12529525 intron bun - chr2L_51_12525001 chr2L_12525001 RAL-819 469 chr2L 12558312 12558352 chr2L 12565447 12565505 HMS-Beagle 26 7150 7.5 5.0 6.2 3.6 7193 chr2L 12558312 intergenic not near genes chr2L 12561908 intergenic not near genes chr2L 12565505 intergenic not near genes chr2L_26_12560001 chr2L_12560001 RAL-819 470 chr2L 12619878 12619904 chr2L 12619979 12620005 23 100 18.5 10.5 14.5 1.5 127 chr2L 12619878 intron,intron nub +,Ref2 - chr2L 12619942 intron,intron nub +,Ref2 - chr2L 12620005 intron,intron nub +,Ref2 - chr2L_23_12615001 chr2L_12615001 RAL-819 471 chr2L 12652916 12652972 chr2L 12653121 12653167 36 201 11.0 12.5 11.8 2.8 251 chr2L 12652916 intergenic not near genes chr2L 12653042 intergenic not near genes chr2L 12653167 intergenic not near genes chr2L_36_12650001 chr2L_12650001 RAL-819 472 chr2L 12677690 12677730 chr2L 12677801 12677841 30 111 6.0 7.0 6.5 4.0 151 chr2L 12677690 intron pdm2 + chr2L 12677766 intron pdm2 + chr2L 12677841 intron pdm2 + chr2L_30_12675001 chr2L_12675001 RAL-819 473 chr2L 12731034 12731089 chr2L 12735826 12735870 F-element 55 4790 14.5 14.5 14.5 3.5 4836 chr2L 12731034 intron MRP + chr2L 12733452 intron MRP + chr2L 12735870 intron MRP + chr2L_55_12730001 chr2L_12730001 RAL-819 474 chr2L 12736335 12736342 chr2L 12736448 12736455 6 113 7.5 25.5 16.5 0.3 120 chr2L 12736335 intron MRP + chr2L 12736395 intron MRP + chr2L 12736455 intron MRP + chr2L_6_12735001 chr2L_12735001 RAL-819 475 chr2L 12736343 12736359 chr2L 12736419 12736472 13 106 2.5 11.5 7.0 1.6 129 chr2L 12736343 intron MRP + chr2L 12736408 intron MRP + chr2L 12736472 intron MRP + chr2L_13_12735001 chr2L_12735001 RAL-819 476 chr2L 12739149 12739203 chr2L 12743956 12743968 Doc 37 4804 13.0 17.0 15.0 2.3 4819 chr2L 12739149 exon MRP + chr2L 12741558 intron MRP + chr2L 12743968 intron MRP + chr2L_37_12740001 chr2L_12740001 RAL-819 477 chr2L 12763801 12763872 chr2L 12764038 12764092 BS 19 231 0.0 0.0 0.0 19.0 291 chr2L 12763801 intergenic not near genes chr2L 12763946 intergenic not near genes chr2L 12764092 intergenic not near genes chr2L_19_12760001 chr2L_12760001 RAL-819 478 chr2L 12781778 12781786 chr2L 12789246 12789247 Quasimodo 7 7467 32.5 17.5 25.0 0.3 7469 chr2L 12781778 intergenic not near genes chr2L 12785512 intergenic not near genes chr2L 12789247 intergenic not near genes chr2L_7_12785001 chr2L_12785001 RAL-819 479 chr2L 12781787 12781815 chr2L 12789245 12789261 Quasimodo 16 7462 22.0 16.5 19.2 0.8 7474 chr2L 12781787 intergenic not near genes chr2L 12785524 intergenic not near genes chr2L 12789261 intergenic not near genes chr2L_16_12785001 chr2L_12785001 RAL-819 480 chr2L 12791585 12791623 chr2L 12795285 12795308 F-element 21 3697 10.0 18.0 14.0 1.4 3723 chr2L 12791585 intergenic not near genes chr2L 12793446 intergenic not near genes chr2L 12795308 intergenic not near genes chr2L_21_12790001 chr2L_12790001 RAL-819 481 chr2L 12791624 12791629 chr2L 12795281 12795329 F-element 21 3683 9.0 15.0 12.0 1.6 3705 chr2L 12791624 intergenic not near genes chr2L 12793476 intergenic not near genes chr2L 12795329 intergenic not near genes chr2L_21_12790001 chr2L_12790001 RAL-819 482 chr2L 12861671 12861730 chr2L 12863163 12863182 hobo 51 1484 11.0 14.5 12.8 3.7 1511 chr2L 12861671 intergenic not near genes chr2L 12862426 intergenic not near genes chr2L 12863182 intergenic not near genes chr2L_51_12860001 chr2L_12860001 RAL-819 483 chr2L 12894005 12894030 chr2L 12895490 12895522 hobo 17 1485 21.0 21.0 21.0 0.8 1517 chr2L 12894005 intergenic not near genes chr2L 12894764 intergenic not near genes chr2L 12895522 intergenic not near genes chr2L_17_12890001 chr2L_12890001 RAL-819 484 chr2L 12894031 12894049 chr2L 12895482 12895500 hobo 10 1475 12.0 20.0 16.0 0.6 1469 chr2L 12894031 intergenic not near genes chr2L 12894766 intergenic not near genes chr2L 12895500 intergenic not near genes chr2L_10_12890001 chr2L_12890001 RAL-819 485 chr2L 12933826 12933880 chr2L 12941318 12941372 blood 64 7489 14.5 16.5 15.5 3.9 7546 chr2L 12933826 intergenic not near genes chr2L 12937599 intergenic not near genes chr2L 12941372 intergenic not near genes chr2L_64_12935001 chr2L_12935001 RAL-819 486 chr2L 12944911 12944965 chr2L 12945086 12945138 19 172 4.5 0.0 2.2 5.9 227 chr2L 12944911 intergenic not near genes chr2L 12945024 intergenic not near genes chr2L 12945138 intergenic not near genes chr2L_19_12945001 chr2L_12945001 RAL-819 487 chr2L 13036222 13036269 chr2L 13036489 13036536 X-element 32 265 14.0 13.0 13.5 2.2 314 chr2L 13036222 intron CG9932 - chr2L 13036379 intron CG9932 - chr2L 13036536 intron CG9932 - chr2L_32_13035001 chr2L_13035001 RAL-819 488 chr2L 13043379 13043433 chr2L 13043482 13043522 36 101 13.0 12.5 12.8 2.6 143 chr2L 13043379 intron CG9932 - chr2L 13043450 intron CG9932 - chr2L 13043522 intron CG9932 - chr2L_36_13040001 chr2L_13040001 RAL-819 489 chr2L 13093067 13093107 chr2L 13093170 13093189 35 100 18.0 21.5 19.8 1.7 122 chr2L 13093067 intergenic not near genes chr2L 13093128 intergenic not near genes chr2L 13093189 intergenic not near genes chr2L_35_13090001 chr2L_13090001 RAL-819 490 chr2L 13112249 13112304 chr2L 13112393 13112448 35 143 8.5 12.0 10.2 3.1 199 chr2L 13112249 intergenic not near genes chr2L 13112348 intergenic not near genes chr2L 13112448 intergenic not near genes chr2L_35_13110001 chr2L_13110001 RAL-819 491 chr2L 13154097 13154123 chr2L 13154194 13154226 25 102 15.5 3.0 9.2 2.5 129 chr2L 13154097 intergenic not near genes chr2L 13154162 intergenic not near genes chr2L 13154226 intergenic not near genes chr2L_25_13150001 chr2L_13150001 RAL-819 492 chr2L 13215359 13215412 chr2L 13215659 13215711 41 296 17.0 15.0 16.0 2.4 352 chr2L 13215359 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215535 intergenic kek4 -,snRNA:U2:34ABb +,snRNA:U2:34ABc + chr2L 13215711 intergenic snRNA:U2:34ABb +,snRNA:U2:34ABc +,kek4 - chr2L_41_13215001 chr2L_13215001 RAL-819 493 chr2L 13266353 13266412 chr2L 13266466 13266525 52 111 7.5 12.5 10.0 4.7 172 chr2L 13266353 intron CG44085 + chr2L 13266439 intron CG44085 + chr2L 13266525 intron CG44085 + chr2L_52_13265001 chr2L_13265001 RAL-819 494 chr2L 13405621 13405678 chr2L 13410443 13410500 Doc 36 4818 18.0 13.5 15.8 2.1 4879 chr2L 13405621 exon CG7110 + chr2L 13408060 intron CG7110 + chr2L 13410500 intron CG7110 + chr2L_36_13405001 chr2L_13405001 RAL-819 495 chr2L 13422308 13422361 chr2L 13422424 13422477 30 115 8.5 10.5 9.5 2.9 169 chr2L 13422308 intron CG42784 + chr2L 13422392 intron CG42784 + chr2L 13422477 intron CG42784 + chr2L_30_13420001 chr2L_13420001 RAL-819 496 chr2L 13449447 13449496 chr2L 13456908 13456957 Quasimodo 30 7460 11.5 20.5 16.0 1.8 7510 chr2L 13449447 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453202 intron CG42784 + chr2L 13456957 intron CG42784 + chr2L_30_13450001 chr2L_13450001 RAL-819 497 chr2L 13460319 13460352 chr2L 13460488 13460521 27 168 15.0 19.0 17.0 1.5 202 chr2L 13460319 intron CG42784 + chr2L 13460420 intron CG42784 + chr2L 13460521 intron CG42784 + chr2L_27_13460001 chr2L_13460001 RAL-819 498 chr2L 13560377 13560403 chr2L 13565223 13565249 F-element 24 4845 22.0 14.0 18.0 1.3 4872 chr2L 13560377 intron kuz + chr2L 13562813 intron kuz + chr2L 13565249 intron kuz + chr2L_24_13560001 chr2L_13560001 RAL-819 499 chr2L 13560407 13560421 chr2L 13565222 13565267 F-element 11 4842 17.0 14.0 15.5 0.7 4860 chr2L 13560407 intron kuz + chr2L 13562837 intron kuz + chr2L 13565267 intron kuz + chr2L_11_13560001 chr2L_13560001 RAL-819 500 chr2L 13591766 13591776 chr2L 13591876 13591879 7 109 7.0 19.5 13.2 0.5 113 chr2L 13591766 intron kuz + chr2L 13591822 intron kuz + chr2L 13591879 intron kuz + chr2L_7_13590001 chr2L_13590001 RAL-819 501 chr2L 13605033 13605037 chr2L 13605130 13605137 5 99 30.0 9.0 19.5 0.2 104 chr2L 13605033 intron kuz + chr2L 13605085 intron kuz + chr2L 13605137 intron kuz + chr2L_5_13605001 chr2L_13605001 RAL-819 502 chr2L 13605038 13605081 chr2L 13605128 13605168 20 84 9.0 9.5 9.2 2.0 130 chr2L 13605038 intron kuz + chr2L 13605103 intron kuz + chr2L 13605168 intron kuz + chr2L_20_13605001 chr2L_13605001 RAL-819 503 chr2L 13622114 13622137 chr2L 13622238 13622246 16 121 18.5 6.0 12.2 1.2 132 chr2L 13622114 intron kuz + chr2L 13622180 intron kuz + chr2L 13622246 intron kuz + chr2L_16_13620001 chr2L_13620001 RAL-819 504 chr2L 13622139 13622169 chr2L 13622237 13622256 20 103 8.5 6.0 7.2 2.4 117 chr2L 13622139 intron kuz + chr2L 13622198 intron kuz + chr2L 13622256 intron kuz + chr2L_20_13620001 chr2L_13620001 RAL-819 505 chr2L 13713535 13713571 chr2L 13713636 13713672 25 100 13.0 12.5 12.8 1.8 137 chr2L 13713535 intron CG31814 - chr2L 13713604 intron CG31814 - chr2L 13713672 intron CG31814 - chr2L_25_13710001 chr2L_13710001 RAL-819 506 chr2L 13740041 13740095 chr2L 13740144 13740200 18 102 1.5 11.5 6.5 2.4 159 chr2L 13740041 intergenic not near genes chr2L 13740120 intergenic not near genes chr2L 13740200 intergenic not near genes chr2L_18_13740001 chr2L_13740001 RAL-819 507 chr2L 13749191 13749211 chr2L 13749299 13749319 14 108 0.0 0.5 0.2 11.7 128 chr2L 13749191 intron,intron CR44846 +,TM9SF4 + chr2L 13749255 intron,intron CR44846 +,TM9SF4 + chr2L 13749319 intron,intron CR44846 +,TM9SF4 + chr2L_14_13745001 chr2L_13745001 RAL-819 508 chr2L 13761788 13761825 chr2L 13762924 13762961 Doc 36 1135 9.5 16.0 12.8 2.6 1173 chr2L 13761788 intron TM9SF4 + chr2L 13762374 intron TM9SF4 + chr2L 13762961 intron TM9SF4 + chr2L_36_13760001 chr2L_13760001 RAL-819 509 chr2L 13842105 13842165 chr2L 13842214 13842274 32 107 8.5 6.5 7.5 3.8 169 chr2L 13842105 intron CenG1A + chr2L 13842190 intron CenG1A + chr2L 13842274 intron CenG1A + chr2L_32_13840001 chr2L_13840001 RAL-819 510 chr2L 13853065 13853086 chr2L 13862240 13862261 roo 24 9175 26.0 15.5 20.8 1.1 9196 chr2L 13853065 intron CenG1A + chr2L 13857663 intron CenG1A + chr2L 13862261 intron CenG1A + chr2L_24_13855001 chr2L_13855001 RAL-819 511 chr2L 13853088 13853107 chr2L 13862232 13862281 roo 20 9171 18.5 11.5 15.0 1.2 9193 chr2L 13853088 intron CenG1A + chr2L 13857684 intron CenG1A + chr2L 13862281 intron CenG1A + chr2L_20_13855001 chr2L_13855001 RAL-819 512 chr2L 13913568 13913605 chr2L 13913706 13913743 30 137 15.5 18.0 16.8 1.7 175 chr2L 13913568 intergenic not near genes chr2L 13913656 intergenic not near genes chr2L 13913743 intergenic not near genes chr2L_30_13910001 chr2L_13910001 RAL-819 513 chr2L 13918791 13918847 chr2L 13918903 13918948 45 109 10.0 11.5 10.8 3.8 157 chr2L 13918791 intron Ance-3 + chr2L 13918870 intron Ance-3 + chr2L 13918948 intron Ance-3 + chr2L_45_13915001 chr2L_13915001 RAL-819 514 chr2L 13988255 13988394 chr2L 13988367 13988500 39 109 0.0 0.0 0.0 39.0 245 chr2L 13988255 intron rk - chr2L 13988378 intron rk - chr2L 13988500 intron rk - chr2L_39_13985001 chr2L_13985001 RAL-819 515 chr2L 14068579 14068633 chr2L 14068684 14068738 37 93 10.5 0.0 5.2 6.0 159 chr2L 14068579 intron nAChRalpha5 + chr2L 14068658 intron nAChRalpha5 + chr2L 14068738 intron nAChRalpha5 + chr2L_37_14065001 chr2L_14065001 RAL-819 516 chr2L 14116858 14116910 chr2L 14117149 14117201 35 291 14.0 9.0 11.5 2.8 343 chr2L 14116858 intergenic not near genes chr2L 14117030 intergenic not near genes chr2L 14117201 intergenic not near genes chr2L_35_14115001 chr2L_14115001 RAL-819 517 chr2L 14120734 14120785 chr2L 14120860 14120909 36 122 8.5 13.0 10.8 3.1 175 chr2L 14120734 intergenic not near genes chr2L 14120822 intergenic not near genes chr2L 14120909 intergenic not near genes chr2L_36_14120001 chr2L_14120001 RAL-819 518 chr2L 14148385 14148683 chr2L 14148582 14148826 56 170 9.0 7.0 8.0 6.2 441 chr2L 14148385 intron CG17341 + chr2L 14148606 intron CG17341 + chr2L 14148826 intron CG17341 + chr2L_56_14145001 chr2L_14145001 RAL-819 519 chr2L 14148688 14148701 chr2L 14148796 14148844 9 136 3.5 15.5 9.5 0.9 156 chr2L 14148688 intron CG17341 + chr2L 14148766 intron CG17341 + chr2L 14148844 intron CG17341 + chr2L_9_14145001 chr2L_14145001 RAL-819 520 chr2L 14251459 14251464 chr2L 14251572 14251577 4 112 20.0 6.5 13.2 0.3 118 chr2L 14251459 intergenic not near genes chr2L 14251518 intergenic not near genes chr2L 14251577 intergenic not near genes chr2L_4_14250001 chr2L_14250001 RAL-819 521 chr2L 14301737 14301750 chr2L 14301846 14301859 16 109 13.0 0.0 6.5 2.1 122 chr2L 14301737 intron wb + chr2L 14301798 intron wb + chr2L 14301859 intron wb + chr2L_16_14300001 chr2L_14300001 RAL-819 522 chr2L 14333900 14333905 chr2L 14334025 14334030 5 124 11.5 21.5 16.5 0.3 130 chr2L 14333900 intergenic ms(2)34Fe +,CG33090 + chr2L 14333965 intergenic ms(2)34Fe +,CG33090 + chr2L 14334030 intergenic CG33090 +,ms(2)34Fe + chr2L_5_14330001 chr2L_14330001 RAL-819 523 chr2L 14333906 14333928 chr2L 14334020 14334053 11 124 4.5 19.0 11.8 0.9 147 chr2L 14333906 intergenic ms(2)34Fe +,CG33090 + chr2L 14333980 intergenic ms(2)34Fe +,CG33090 + chr2L 14334053 intergenic CG33090 +,ms(2)34Fe + chr2L_11_14330001 chr2L_14330001 RAL-819 524 chr2L 14369105 14369160 chr2L 14369246 14369301 31 139 10.5 10.5 10.5 2.7 196 chr2L 14369105 intergenic not near genes chr2L 14369203 intergenic not near genes chr2L 14369301 intergenic not near genes chr2L_31_14365001 chr2L_14365001 RAL-819 525 chr2L 14462703 14462822 chr2L 14462815 14462943 15 115 0.0 0.0 0.0 15.0 240 chr2L 14462703 intergenic not near genes chr2L 14462823 intergenic not near genes chr2L 14462943 intergenic not near genes chr2L_15_14460001 chr2L_14460001 RAL-819 526 chr2L 14465562 14465617 chr2L 14469050 14469119 hopper2 21 3499 11.5 0.5 6.0 3.0 3557 chr2L 14465562 intergenic not near genes chr2L 14467340 intergenic not near genes chr2L 14469119 intergenic not near genes chr2L_21_14465001 chr2L_14465001 RAL-819 527 chr2L 14503413 14503422 chr2L 14503517 14503526 7 104 15.0 12.5 13.8 0.5 113 chr2L 14503413 intergenic not near genes chr2L 14503470 intergenic not near genes chr2L 14503526 intergenic not near genes chr2L_7_14500001 chr2L_14500001 RAL-819 528 chr2L 14503423 14503435 chr2L 14503516 14503539 7 102 10.5 11.0 10.8 0.6 116 chr2L 14503423 intergenic not near genes chr2L 14503481 intergenic not near genes chr2L 14503539 intergenic not near genes chr2L_7_14500001 chr2L_14500001 RAL-819 529 chr2L 14537631 14537689 chr2L 14537748 14537806 41 116 9.5 10.0 9.8 3.8 175 chr2L 14537631 intergenic not near genes chr2L 14537718 intergenic not near genes chr2L 14537806 intergenic not near genes chr2L_41_14535001 chr2L_14535001 RAL-819 530 chr2L 14564175 14564196 chr2L 14564276 14564297 11 96 21.5 15.0 18.2 0.6 122 chr2L 14564175 intergenic CG3473 - chr2L 14564236 intergenic not near genes chr2L 14564297 intergenic not near genes chr2L_11_14560001 chr2L_14560001 RAL-819 531 chr2L 14564198 14564199 chr2L 14564275 14564294 4 87 21.0 15.0 18.0 0.2 96 chr2L 14564198 intergenic CG3473 - chr2L 14564246 intergenic not near genes chr2L 14564294 intergenic not near genes chr2L_4_14560001 chr2L_14560001 RAL-819 532 chr2L 14564205 14564228 chr2L 14564271 14564316 42 91 14.5 16.0 15.2 2.6 111 chr2L 14564205 intergenic CG3473 - chr2L 14564260 intergenic not near genes chr2L 14564316 intergenic not near genes chr2L_42_14560001 chr2L_14560001 RAL-819 533 chr2L 14570695 14570721 chr2L 14570801 14570827 18 106 0.0 12.5 6.2 2.5 132 chr2L 14570695 intergenic not near genes chr2L 14570761 intergenic not near genes chr2L 14570827 intergenic not near genes chr2L_18_14570001 chr2L_14570001 RAL-819 534 chr2L 14588360 14588419 chr2L 14588539 14588580 51 175 10.5 14.0 12.2 3.9 220 chr2L 14588360 intergenic CG42680 - chr2L 14588470 intergenic CG42680 - chr2L 14588580 intergenic CG42680 - chr2L_51_14585001 chr2L_14585001 RAL-819 535 chr2L 14613409 14613425 chr2L 14613735 14613751 8 325 34.5 15.5 25.0 0.3 342 chr2L 14613409 intron,5` UTR osp -,CR43411 + chr2L 14613580 intron,5` UTR osp -,CR43411 + chr2L 14613751 intron osp - chr2L_8_14610001 chr2L_14610001 RAL-819 536 chr2L 14613428 14613460 chr2L 14613733 14613754 17 310 13.0 13.5 13.2 1.2 326 chr2L 14613428 intron,5` UTR osp -,CR43411 + chr2L 14613591 intron,5` UTR osp -,CR43411 + chr2L 14613754 intron osp - chr2L_17_14610001 chr2L_14610001 RAL-819 537 chr2L 14621349 14621405 chr2L 14621474 14621522 43 120 12.0 13.0 12.5 3.2 173 chr2L 14621349 intron osp - chr2L 14621436 intron osp - chr2L 14621522 intron osp - chr2L_43_14620001 chr2L_14620001 RAL-819 538 chr2L 14624529 14624562 chr2L 14624633 14624666 26 104 8.5 16.5 12.5 1.9 137 chr2L 14624529 intron osp - chr2L 14624598 intron osp - chr2L 14624666 intron osp - chr2L_26_14620001 chr2L_14620001 RAL-819 539 chr2L 14642550 14642563 chr2L 14651738 14651751 roo 13 9188 37.0 14.5 25.8 0.5 9201 chr2L 14642550 intron osp - chr2L 14647150 intron osp - chr2L 14651751 intron osp - chr2L_13_14645001 chr2L_14645001 RAL-819 540 chr2L 14642564 14642575 chr2L 14651737 14651763 roo 14 9186 33.0 13.5 23.2 0.6 9199 chr2L 14642564 intron osp - chr2L 14647164 intron osp - chr2L 14651763 intron osp - chr2L_14_14645001 chr2L_14645001 RAL-819 541 chr2L 14642578 14642601 chr2L 14651735 14651789 roo 16 9184 17.5 13.0 15.2 1.0 9211 chr2L 14642578 intron osp - chr2L 14647184 intron osp - chr2L 14651789 intron osp - chr2L_16_14645001 chr2L_14645001 RAL-819 542 chr2L 14664579 14664626 chr2L 14665868 14665924 35 1294 56.5 97.0 76.8 0.4 1345 chr2L 14664579 intron osp - chr2L 14665252 intron osp - chr2L 14665924 intron osp - chr2L_35_14665001 chr2L_14665001 RAL-819 543 chr2L 14726558 14726577 chr2L 14726665 14726684 16 107 12.5 20.0 16.2 0.9 126 chr2L 14726558 intron CG42685 - chr2L 14726621 intron CG42685 - chr2L 14726684 intron CG42685 - chr2L_16_14725001 chr2L_14725001 RAL-819 544 chr2L 14745431 14745490 chr2L 14745537 14745597 23 105 11.5 10.0 10.8 1.9 166 chr2L 14745431 3` UTR CR45460 - chr2L 14745514 3` UTR CR45460 - chr2L 14745597 intergenic CR45460 -,CR45459 +,CG42587 - chr2L_23_14745001 chr2L_14745001 RAL-819 545 chr2L 14775944 14775974 chr2L 14776046 14776076 21 101 3.0 10.5 6.8 2.7 132 chr2L 14775944 intergenic not near genes chr2L 14776010 intergenic not near genes chr2L 14776076 intergenic not near genes chr2L_21_14775001 chr2L_14775001 RAL-819 546 chr2L 14799380 14799430 chr2L 14799728 14799778 30 346 7.5 11.0 9.2 2.9 398 chr2L 14799380 intergenic not near genes chr2L 14799579 intergenic not near genes chr2L 14799778 intergenic not near genes chr2L_30_14795001 chr2L_14795001 RAL-819 547 chr2L 14802482 14802491 chr2L 14802590 14802599 9 108 0.0 26.0 13.0 0.6 117 chr2L 14802482 exon CG33308 + chr2L 14802540 exon CG33308 + chr2L 14802599 exon CG33308 + chr2L_9_14800001 chr2L_14800001 RAL-819 548 chr2L 14803855 14803910 chr2L 14809083 14809132 copia 38 5227 11.5 11.0 11.2 3.1 5277 chr2L 14803855 intergenic not near genes chr2L 14806494 intergenic not near genes chr2L 14809132 intergenic not near genes chr2L_38_14805001 chr2L_14805001 RAL-819 549 chr2L 14887669 14887699 chr2L 14887772 14887802 23 103 22.0 10.5 16.2 1.3 133 chr2L 14887669 intergenic not near genes chr2L 14887736 intergenic not near genes chr2L 14887802 intergenic not near genes chr2L_23_14885001 chr2L_14885001 RAL-819 550 chr2L 14923082 14923137 chr2L 14923182 14923242 44 102 13.0 6.5 9.8 4.1 160 chr2L 14923082 intron CG42313 - chr2L 14923162 intron CG42313 - chr2L 14923242 intron CG42313 - chr2L_44_14920001 chr2L_14920001 RAL-819 551 chr2L 14945413 14945464 chr2L 14945534 14945584 36 119 7.5 0.5 4.0 7.2 171 chr2L 14945413 intron CG42313 - chr2L 14945498 intron CG42313 - chr2L 14945584 intron CG42313 - chr2L_36_14945001 chr2L_14945001 RAL-819 552 chr2L 14984360 14984393 chr2L 14991987 14992020 opus 21 7626 22.5 14.5 18.5 1.1 7660 chr2L 14984360 intron mol - chr2L 14988190 intron mol - chr2L 14992020 intron mol - chr2L_21_14985001 chr2L_14985001 RAL-819 553 chr2L 14984394 14984405 chr2L 14991985 14992032 opus 10 7623 19.0 14.5 16.8 0.6 7638 chr2L 14984394 intron mol - chr2L 14988213 intron mol - chr2L 14992032 intron mol - chr2L_10_14985001 chr2L_14985001 RAL-819 554 chr2L 15003519 15003571 chr2L 15003628 15003680 45 106 8.5 11.0 9.8 4.2 161 chr2L 15003519 intergenic not near genes chr2L 15003600 intergenic not near genes chr2L 15003680 intergenic not near genes chr2L_45_15000001 chr2L_15000001 RAL-819 555 chr2L 15013127 15013181 chr2L 15013256 15013315 32 130 5.5 13.0 9.2 3.1 188 chr2L 15013127 intergenic CR43856 - chr2L 15013221 intergenic not near genes chr2L 15013315 intergenic not near genes chr2L_32_15010001 chr2L_15010001 RAL-819 556 chr2L 15014598 15014653 chr2L 15014700 15014749 15 101 1.0 12.0 6.5 2.0 151 chr2L 15014598 intergenic not near genes chr2L 15014674 intergenic not near genes chr2L 15014749 intergenic not near genes chr2L_15_15010001 chr2L_15010001 RAL-819 557 chr2L 15044697 15044700 chr2L 15044798 15044801 4 101 21.0 0.5 10.8 0.3 104 chr2L 15044697 intergenic ck - chr2L 15044749 intergenic ck - chr2L 15044801 intergenic ck - chr2L_4_15040001 chr2L_15040001 RAL-819 558 chr2L 15044701 15044708 chr2L 15044797 15044809 6 99 18.5 0.5 9.5 0.6 108 chr2L 15044701 intergenic ck - chr2L 15044755 intergenic ck - chr2L 15044809 intergenic ck - chr2L_6_15040001 chr2L_15040001 RAL-819 559 chr2L 15044709 15044728 chr2L 15044792 15044829 22 99 8.5 0.5 4.5 4.0 120 chr2L 15044709 intergenic ck - chr2L 15044769 intergenic ck - chr2L 15044829 intergenic ck - chr2L_22_15040001 chr2L_15040001 RAL-819 560 chr2L 15072312 15072330 chr2L 15072429 15072439 5 115 28.0 26.5 27.2 0.2 127 chr2L 15072312 intron vas + chr2L 15072376 exon vas + chr2L 15072439 exon vas + chr2L_5_15070001 chr2L_15070001 RAL-819 561 chr2L 15077865 15078098 chr2L 15077978 15078211 78 111 8.5 9.5 9.0 7.8 346 chr2L 15077865 intron CG15270 + chr2L 15078038 intron CG15270 + chr2L 15078211 intron CG15270 + chr2L_78_15075001 chr2L_15075001 RAL-819 562 chr2L 15125571 15125627 chr2L 15125676 15125732 31 104 10.0 11.5 10.8 2.6 161 chr2L 15125571 intergenic not near genes chr2L 15125652 intergenic not near genes chr2L 15125732 intergenic not near genes chr2L_31_15125001 chr2L_15125001 RAL-819 563 chr2L 15138963 15139004 chr2L 15139076 15139115 12 112 10.0 0.0 5.0 2.0 152 chr2L 15138963 intergenic not near genes chr2L 15139039 intergenic not near genes chr2L 15139115 intergenic not near genes chr2L_12_15135001 chr2L_15135001 RAL-819 564 chr2L 15161224 15161274 chr2L 15161385 15161435 37 160 13.0 8.5 10.8 3.1 211 chr2L 15161224 intergenic CR44770 + chr2L 15161330 intergenic CR44770 + chr2L 15161435 intergenic CR44770 +,CG4168 - chr2L_37_15160001 chr2L_15160001 RAL-819 565 chr2L 15226348 15226394 chr2L 15226446 15226495 19 98 17.0 10.5 13.8 1.3 147 chr2L 15226348 intergenic not near genes chr2L 15226422 intergenic not near genes chr2L 15226495 intergenic not near genes chr2L_19_15225001 chr2L_15225001 RAL-819 566 chr2L 15332077 15332094 chr2L 15332181 15332198 7 104 18.0 13.0 15.5 0.4 121 chr2L 15332077 intergenic not near genes chr2L 15332138 intergenic not near genes chr2L 15332198 intergenic not near genes chr2L_7_15330001 chr2L_15330001 RAL-819 567 chr2L 15339958 15340010 chr2L 15340066 15340115 30 103 4.0 9.5 6.8 3.8 157 chr2L 15339958 intergenic not near genes chr2L 15340036 intergenic not near genes chr2L 15340115 intergenic not near genes chr2L_30_15340001 chr2L_15340001 RAL-819 568 chr2L 15343514 15343566 chr2L 15343624 15343647 16 108 6.0 1.0 3.5 3.6 133 chr2L 15343514 intergenic not near genes chr2L 15343580 intergenic not near genes chr2L 15343647 intergenic not near genes chr2L_16_15340001 chr2L_15340001 RAL-819 569 chr2L 15355686 15355743 chr2L 15355789 15355846 34 102 9.5 6.5 8.0 3.8 160 chr2L 15355686 intergenic not near genes chr2L 15355766 intergenic not near genes chr2L 15355846 intergenic not near genes chr2L_34_15355001 chr2L_15355001 RAL-819 570 chr2L 15375792 15375846 chr2L 15375929 15375983 40 134 6.0 9.0 7.5 4.7 191 chr2L 15375792 intergenic not near genes chr2L 15375888 intergenic not near genes chr2L 15375983 intergenic not near genes chr2L_40_15375001 chr2L_15375001 RAL-819 571 chr2L 15399766 15399778 chr2L 15399870 15399882 6 104 23.5 8.5 16.0 0.4 116 chr2L 15399766 3` UTR CR44860 - chr2L 15399824 3` UTR CR44860 - chr2L 15399882 intergenic CR44860 -,CR45374 - chr2L_6_15395001 chr2L_15395001 RAL-819 572 chr2L 15446026 15446077 chr2L 15453520 15453564 blood 33 7491 15.0 11.0 13.0 2.4 7538 chr2L 15446026 intergenic not near genes chr2L 15449795 intergenic not near genes chr2L 15453564 intergenic not near genes chr2L_33_15445001 chr2L_15445001 RAL-819 573 chr2L 15488540 15488595 chr2L 15488644 15488699 53 103 15.0 14.5 14.8 3.4 159 chr2L 15488540 intergenic not near genes chr2L 15488620 intergenic not near genes chr2L 15488699 intergenic not near genes chr2L_53_15485001 chr2L_15485001 RAL-819 574 chr2L 15500040 15500098 chr2L 15500144 15500202 23 103 3.5 18.0 10.8 1.9 162 chr2L 15500040 intron lace + chr2L 15500121 intron lace + chr2L 15500202 intron lace + chr2L_23_15500001 chr2L_15500001 RAL-819 575 chr2L 15500799 15500857 chr2L 15500901 15500959 52 101 6.5 8.5 7.5 6.1 160 chr2L 15500799 intron lace + chr2L 15500879 intron lace + chr2L 15500959 intron lace + chr2L_52_15500001 chr2L_15500001 RAL-819 576 chr2L 15514300 15514310 chr2L 15514409 15514419 10 108 24.5 23.0 23.8 0.4 119 chr2L 15514300 intergenic not near genes chr2L 15514360 intergenic not near genes chr2L 15514419 intergenic not near genes chr2L_10_15510001 chr2L_15510001 RAL-819 577 chr2L 15514312 15514333 chr2L 15514408 15514442 15 103 16.5 22.5 19.5 0.7 130 chr2L 15514312 intergenic not near genes chr2L 15514377 intergenic not near genes chr2L 15514442 intergenic not near genes chr2L_15_15510001 chr2L_15510001 RAL-819 578 chr2L 15535859 15535916 chr2L 15535974 15535975 40 109 8.0 9.5 8.8 4.1 116 chr2L 15535859 intergenic not near genes chr2L 15535917 intergenic not near genes chr2L 15535975 intergenic not near genes chr2L_40_15535001 chr2L_15535001 RAL-819 579 chr2L 15542410 15542461 chr2L 15542530 15542581 39 113 7.5 17.0 12.2 3.0 171 chr2L 15542410 intergenic not near genes chr2L 15542496 intergenic not near genes chr2L 15542581 intergenic not near genes chr2L_39_15540001 chr2L_15540001 RAL-819 580 chr2L 15543165 15543197 chr2L 15543271 15543303 22 106 10.0 8.5 9.2 2.2 138 chr2L 15543165 intergenic not near genes chr2L 15543234 intergenic not near genes chr2L 15543303 intergenic not near genes chr2L_22_15540001 chr2L_15540001 RAL-819 581 chr2L 15586385 15586440 chr2L 15593462 15593516 297 37 7074 9.5 16.5 13.0 2.6 7131 chr2L 15586385 intergenic not near genes chr2L 15589950 intergenic not near genes chr2L 15593516 intergenic not near genes chr2L_37_15585001 chr2L_15585001 RAL-819 582 chr2L 15598744 15598798 chr2L 15598848 15598897 12 104 10.0 1.0 5.5 1.8 153 chr2L 15598744 intergenic not near genes chr2L 15598820 intergenic not near genes chr2L 15598897 intergenic not near genes chr2L_12_15595001 chr2L_15595001 RAL-819 583 chr2L 15636654 15636696 chr2L 15636755 15636798 13 101 12.0 1.5 6.8 1.7 144 chr2L 15636654 intergenic not near genes chr2L 15636726 intergenic not near genes chr2L 15636798 intergenic not near genes chr2L_13_15635001 chr2L_15635001 RAL-819 584 chr2L 15730863 15730894 chr2L 15730973 15731004 22 109 11.5 12.0 11.8 1.7 141 chr2L 15730863 intron CycE - chr2L 15730934 intron CycE - chr2L 15731004 intron CycE - chr2L_22_15730001 chr2L_15730001 RAL-819 585 chr2L 15823327 15823372 chr2L 15823428 15823473 31 99 9.0 11.0 10.0 2.8 146 chr2L 15823327 intergenic CR44601 - chr2L 15823400 intergenic CR44601 - chr2L 15823473 intergenic not near genes chr2L_31_15820001 chr2L_15820001 RAL-819 586 chr2L 15826872 15826891 chr2L 15829291 15829310 Tabor 11 2419 8.5 13.0 10.8 0.9 2438 chr2L 15826872 intergenic not near genes chr2L 15828091 intergenic not near genes chr2L 15829310 intergenic not near genes chr2L_11_15825001 chr2L_15825001 RAL-819 587 chr2L 15887693 15887745 chr2L 15887851 15887903 27 157 6.5 12.5 9.5 2.6 210 chr2L 15887693 intergenic not near genes chr2L 15887798 intergenic not near genes chr2L 15887903 intergenic not near genes chr2L_27_15885001 chr2L_15885001 RAL-819 588 chr2L 15913139 15913173 chr2L 15913248 15913282 31 107 9.0 9.5 9.2 3.0 143 chr2L 15913139 intron beat-Ib - chr2L 15913210 intron beat-Ib - chr2L 15913282 intron beat-Ib - chr2L_31_15910001 chr2L_15910001 RAL-819 589 chr2L 15947614 15947673 chr2L 15947791 15947840 39 176 8.5 9.5 9.0 3.9 226 chr2L 15947614 intron beat-Ib - chr2L 15947727 intron beat-Ib - chr2L 15947840 intron beat-Ib - chr2L_39_15945001 chr2L_15945001 RAL-819 590 chr2L 15954158 15954209 chr2L 15954262 15954315 27 104 8.0 11.5 9.8 2.5 157 chr2L 15954158 intron beat-Ib - chr2L 15954236 intron beat-Ib - chr2L 15954315 intron beat-Ib - chr2L_27_15950001 chr2L_15950001 RAL-819 591 chr2L 15956003 15956058 chr2L 15957490 15957525 hobo 34 1485 14.0 9.5 11.8 2.7 1522 chr2L 15956003 intron beat-Ib - chr2L 15956764 intron beat-Ib - chr2L 15957525 intron beat-Ib - chr2L_34_15955001 chr2L_15955001 RAL-819 592 chr2L 15960858 15960864 chr2L 15961204 15961210 5 346 53.0 24.5 38.8 0.1 352 chr2L 15960858 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961034 intron,5` UTR beat-Ib -,CR43803 + chr2L 15961210 intron beat-Ib - chr2L_5_15960001 chr2L_15960001 RAL-819 593 chr2L 16008677 16008691 chr2L 16008803 16008816 6 126 4.0 5.5 4.8 1.0 139 chr2L 16008677 intron beat-Ic + chr2L 16008746 intron beat-Ic + chr2L 16008816 intron beat-Ic + chr2L_6_16005001 chr2L_16005001 RAL-819 594 chr2L 16027371 16027422 chr2L 16027472 16027521 31 100 13.5 12.5 13.0 2.2 150 chr2L 16027371 intron beat-Ic + chr2L 16027446 intron beat-Ic + chr2L 16027521 intron beat-Ic + chr2L_31_16025001 chr2L_16025001 RAL-819 595 chr2L 16058100 16058113 chr2L 16058266 16058279 13 166 24.5 11.0 17.8 0.7 179 chr2L 16058100 intron beat-Ia + chr2L 16058190 intron beat-Ia + chr2L 16058279 intron beat-Ia + chr2L_13_16055001 chr2L_16055001 RAL-819 596 chr2L 16058116 16058150 chr2L 16058265 16058316 19 165 11.5 10.5 11.0 1.6 200 chr2L 16058116 intron beat-Ia + chr2L 16058216 intron beat-Ia + chr2L 16058316 intron beat-Ia + chr2L_19_16055001 chr2L_16055001 RAL-819 597 chr2L 10522357 10522358 chr2L 16071771 16071771 4 5549414 49.0 60.5 54.8 0.1 5549414 chr2L 10522357 intergenic not near genes chr2L 13297064 intron CG31729 + chr2L 16071771 intron beat-Ia + chr2L_4_13295001 chr2L_13295001 RAL-819 598 chr2L 16071771 16071771 chr2L 16217659 16217660 copia 109 145889 56.0 56.5 56.2 1.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_109_16140001 chr2L_16140001 RAL-819 599 chr2L 16115508 16115551 chr2L 16115609 16115623 22 99 7.0 9.0 8.0 2.4 115 chr2L 16115508 intergenic not near genes chr2L 16115566 intergenic not near genes chr2L 16115623 intergenic not near genes chr2L_22_16115001 chr2L_16115001 RAL-819 600 chr2L 16141168 16141184 chr2L 16146400 16146416 copia 11 5232 0.0 20.5 10.2 1.0 5248 chr2L 16141168 intergenic not near genes chr2L 16143792 intergenic not near genes chr2L 16146416 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-819 601 chr2L 16141187 16141191 chr2L 16146375 16146423 copia 6 5225 0.0 14.0 7.0 0.8 5236 chr2L 16141187 intergenic not near genes chr2L 16143805 intergenic not near genes chr2L 16146423 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-819 602 chr2L 16153718 16153736 chr2L 16160811 16160829 297 17 7092 21.0 15.5 18.2 0.9 7111 chr2L 16153718 intergenic not near genes chr2L 16157274 intergenic not near genes chr2L 16160829 intergenic not near genes chr2L_17_16155001 chr2L_16155001 RAL-819 603 chr2L 16153737 16153749 chr2L 16160810 16160842 297 8 7090 16.0 15.5 15.8 0.5 7105 chr2L 16153737 intergenic not near genes chr2L 16157290 intergenic not near genes chr2L 16160842 intergenic not near genes chr2L_8_16155001 chr2L_16155001 RAL-819 604 chr2L 16197091 16197152 chr2L 16197792 16197853 29 699 6.0 7.5 6.8 3.7 762 chr2L 16197091 intergenic not near genes chr2L 16197472 intergenic not near genes chr2L 16197853 intergenic not near genes chr2L_29_16195001 chr2L_16195001 RAL-819 605 chr2L 7862104 7862104 chr2L 16217660 16217660 4 8355556 70.5 56.0 63.2 0.1 8355556 chr2L 7862104 intergenic not near genes chr2L 12039882 exon CG6766 - chr2L 16217660 intergenic not near genes chr2L_4_12035001 chr2L_12035001 RAL-819 606 chr2L 9084336 9084340 chr2L 16217660 16217660 21 7133321 54.0 56.0 55.0 0.4 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_21_12650001 chr2L_12650001 RAL-819 607 chr2L 9723025 9723026 chr2L 16217660 16217660 5 6494634 58.5 56.0 57.2 0.1 6494635 chr2L 9723025 intron Nckx30C - chr2L 12970342 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_5_12970001 chr2L_12970001 RAL-819 608 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 57 145889 56.0 56.0 56.0 1.0 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_57_16140001 chr2L_16140001 RAL-819 609 chr2L 16217660 16217660 chr2L 18622718 18622775 4 2405072 56.5 22.5 39.5 0.1 2405115 chr2L 16217660 intergenic not near genes chr2L 17420218 intron Dif - chr2L 18622775 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-819 610 chr2L 16280239 16280248 chr2L 16281427 16281444 1360 9 1195 34.0 16.5 25.2 0.3 1205 chr2L 16280239 intron crp - chr2L 16280842 intron crp - chr2L 16281444 intron crp - chr2L_9_16280001 chr2L_16280001 RAL-819 611 chr2L 16280249 16280285 chr2L 16281422 16281445 1360 34 1192 11.0 14.0 12.5 2.5 1196 chr2L 16280249 intron crp - chr2L 16280847 intron crp - chr2L 16281445 intron crp - chr2L_34_16280001 chr2L_16280001 RAL-819 612 chr2L 16386446 16386450 chr2L 16386549 16386553 5 103 0.0 0.0 0.0 5.0 107 chr2L 16386446 intergenic not near genes chr2L 16386500 intergenic not near genes chr2L 16386553 intergenic not near genes chr2L_5_16385001 chr2L_16385001 RAL-819 613 chr2L 16458804 16458817 chr2L 16459025 16459038 9 221 13.5 5.5 9.5 0.9 234 chr2L 16458804 intergenic not near genes chr2L 16458921 intergenic not near genes chr2L 16459038 intergenic not near genes chr2L_9_16455001 chr2L_16455001 RAL-819 614 chr2L 16496750 16496752 chr2L 16496862 16496864 4 112 24.5 19.0 21.8 0.2 114 chr2L 16496750 intron Tpr2 + chr2L 16496807 intron Tpr2 + chr2L 16496864 intron Tpr2 + chr2L_4_16495001 chr2L_16495001 RAL-819 615 chr2L 16496753 16496790 chr2L 16496860 16496879 28 109 9.0 18.0 13.5 1.9 126 chr2L 16496753 intron Tpr2 + chr2L 16496816 intron Tpr2 + chr2L 16496879 intron Tpr2 + chr2L_28_16495001 chr2L_16495001 RAL-819 616 chr2L 16507943 16507960 chr2L 16508041 16508073 8 111 0.0 17.5 8.8 0.8 130 chr2L 16507943 intergenic CG5953 -,Tpr2 + chr2L 16508008 intergenic CG5953 -,Tpr2 + chr2L 16508073 intergenic CG5953 -,Tpr2 + chr2L_8_16505001 chr2L_16505001 RAL-819 617 chr2L 16507961 16507967 chr2L 16508024 16508080 10 107 0.0 11.5 5.8 1.5 119 chr2L 16507961 intergenic CG5953 -,Tpr2 + chr2L 16508020 intergenic CG5953 -,Tpr2 + chr2L 16508080 3` UTR CG5953 - chr2L_10_16505001 chr2L_16505001 RAL-819 618 chr2L 16511960 16511994 chr2L 16519112 16519146 HMS-Beagle 23 7152 12.5 10.0 11.2 1.9 7186 chr2L 16511960 intron CG5953 - chr2L 16515553 intron CG5953 - chr2L 16519146 intron CG5953 - chr2L_23_16515001 chr2L_16515001 RAL-819 619 chr2L 16538495 16538545 chr2L 16538682 16538732 35 185 10.0 10.0 10.0 3.2 237 chr2L 16538495 intergenic not near genes chr2L 16538614 intergenic not near genes chr2L 16538732 intergenic not near genes chr2L_35_16535001 chr2L_16535001 RAL-819 620 chr2L 16544625 16544656 chr2L 16544727 16544758 18 101 23.0 18.0 20.5 0.8 133 chr2L 16544625 intergenic CG42389 + chr2L 16544692 intergenic CG42389 + chr2L 16544758 intergenic CG42389 + chr2L_18_16540001 chr2L_16540001 RAL-819 621 chr2L 16544659 16544679 chr2L 16544724 16544781 17 100 17.0 18.5 17.8 0.9 122 chr2L 16544659 intergenic CG42389 + chr2L 16544720 intergenic CG42389 + chr2L 16544781 intergenic CG42389 + chr2L_17_16540001 chr2L_16540001 RAL-819 622 chr2L 16594115 16594142 chr2L 16594230 16594257 8 115 10.0 7.0 8.5 0.8 142 chr2L 16594115 intron CG42389 + chr2L 16594186 intron CG42389 + chr2L 16594257 intron CG42389 + chr2L_8_16590001 chr2L_16590001 RAL-819 623 chr2L 16597946 16597950 chr2L 16598047 16598051 4 101 3.0 20.5 11.8 0.3 105 chr2L 16597946 intron CG42389 + chr2L 16597998 intron CG42389 + chr2L 16598051 intron CG42389 + chr2L_4_16595001 chr2L_16595001 RAL-819 624 chr2L 16645374 16645429 chr2L 16645480 16645535 31 105 6.5 7.5 7.0 3.9 161 chr2L 16645374 intron CG42389 + chr2L 16645454 intron CG42389 + chr2L 16645535 intron CG42389 + chr2L_31_16645001 chr2L_16645001 RAL-819 625 chr2L 16654678 16654733 chr2L 16654796 16654851 42 118 14.0 11.0 12.5 3.1 173 chr2L 16654678 intron CG42389 + chr2L 16654764 intron CG42389 + chr2L 16654851 intron CG42389 + chr2L_42_16650001 chr2L_16650001 RAL-819 626 chr2L 16670394 16670449 chr2L 16670496 16670551 34 101 8.5 9.0 8.8 3.5 157 chr2L 16670394 intron Trpgamma - chr2L 16670472 intron Trpgamma - chr2L 16670551 intron Trpgamma - chr2L_34_16670001 chr2L_16670001 RAL-819 627 chr2L 16696862 16696912 chr2L 16697204 16697254 34 340 9.5 13.0 11.2 2.8 392 chr2L 16696862 intron grp + chr2L 16697058 intron grp + chr2L 16697254 intron grp + chr2L_34_16695001 chr2L_16695001 RAL-819 628 chr2L 16709054 16709104 chr2L 16709163 16709213 22 108 7.0 9.0 8.0 2.4 159 chr2L 16709054 intron CG31808 - chr2L 16709134 intron CG31808 - chr2L 16709213 intron CG31808 - chr2L_22_16705001 chr2L_16705001 RAL-819 629 chr2L 16716922 16716983 chr2L 16717064 16717122 45 139 13.0 12.5 12.8 3.3 200 chr2L 16716922 intron Cyt-c-d + chr2L 16717022 intron Cyt-c-d + chr2L 16717122 intron Cyt-c-d + chr2L_45_16715001 chr2L_16715001 RAL-819 630 chr2L 16718249 16718298 chr2L 16718359 16718408 37 109 15.0 13.0 14.0 2.5 159 chr2L 16718249 intron Cyt-c-d + chr2L 16718328 intron Cyt-c-d + chr2L 16718408 intron Cyt-c-d + chr2L_37_16715001 chr2L_16715001 RAL-819 631 chr2L 16764948 16764996 chr2L 16765053 16765101 37 104 9.0 10.5 9.8 3.4 153 chr2L 16764948 intergenic not near genes chr2L 16765024 intergenic not near genes chr2L 16765101 intergenic not near genes chr2L_37_16765001 chr2L_16765001 RAL-819 632 chr2L 16791408 16791464 chr2L 16791573 16791617 55 161 13.5 12.0 12.8 4.0 209 chr2L 16791408 intergenic CG17928 + chr2L 16791512 intergenic CG17928 + chr2L 16791617 5` UTR CG17928 + chr2L_55_16790001 chr2L_16790001 RAL-819 633 chr2L 16800455 16800460 chr2L 21646989 21646990 4 4846533 34.0 60.5 47.2 0.1 4846535 chr2L 16800455 exon Ugt36Bc + chr2L 19223722 intergenic not near genes chr2L 21646990 3` UTR Ac3 + chr2L_4_19220001 chr2L_19220001 RAL-819 634 chr2L 16867001 16867033 chr2L 16867121 16867153 25 119 10.5 15.5 13.0 1.8 152 chr2L 16867001 intergenic not near genes chr2L 16867077 intergenic not near genes chr2L 16867153 intergenic not near genes chr2L_25_16865001 chr2L_16865001 RAL-819 635 chr2L 16939976 16939995 chr2L 16940079 16940098 10 102 19.5 16.0 17.8 0.5 122 chr2L 16939976 intergenic not near genes chr2L 16940037 intergenic not near genes chr2L 16940098 intergenic not near genes chr2L_10_16940001 chr2L_16940001 RAL-819 636 chr2L 16939996 16940015 chr2L 16940074 16940118 15 95 7.0 13.5 10.2 1.3 122 chr2L 16939996 intergenic not near genes chr2L 16940057 intergenic not near genes chr2L 16940118 intergenic not near genes chr2L_15_16940001 chr2L_16940001 RAL-819 637 chr2L 16952663 16952670 chr2L 16952794 16952804 6 132 28.0 13.0 20.5 0.3 141 chr2L 16952663 intergenic not near genes chr2L 16952734 intergenic not near genes chr2L 16952804 intergenic not near genes chr2L_6_16950001 chr2L_16950001 RAL-819 638 chr2L 16952674 16952716 chr2L 16952793 16952850 31 132 10.0 12.5 11.2 2.5 176 chr2L 16952674 intergenic not near genes chr2L 16952762 intergenic not near genes chr2L 16952850 intergenic not near genes chr2L_31_16950001 chr2L_16950001 RAL-819 639 chr2L 16958085 16958134 chr2L 16962898 16962947 Doc 34 4812 7.0 12.5 9.8 3.1 4862 chr2L 16958085 intergenic not near genes chr2L 16960516 intergenic not near genes chr2L 16962947 intergenic not near genes chr2L_34_16960001 chr2L_16960001 RAL-819 640 chr2L 17005388 17005435 chr2L 17005510 17005557 42 116 10.0 14.5 12.2 3.2 169 chr2L 17005388 intergenic not near genes chr2L 17005472 intergenic not near genes chr2L 17005557 intergenic not near genes chr2L_42_17005001 chr2L_17005001 RAL-819 641 chr2L 17050012 17050047 chr2L 17050107 17050140 29 100 11.0 17.5 14.2 1.9 128 chr2L 17050012 intergenic not near genes chr2L 17050076 intergenic not near genes chr2L 17050140 intergenic not near genes chr2L_29_17050001 chr2L_17050001 RAL-819 642 chr2L 17070173 17070219 chr2L 17070294 17070337 23 117 9.0 10.0 9.5 2.2 164 chr2L 17070173 intergenic not near genes chr2L 17070255 intergenic not near genes chr2L 17070337 intergenic not near genes chr2L_23_17070001 chr2L_17070001 RAL-819 643 chr2L 17101884 17101894 chr2L 17101981 17101996 4 101 24.5 14.0 19.2 0.2 112 chr2L 17101884 intergenic not near genes chr2L 17101940 intergenic not near genes chr2L 17101996 intergenic not near genes chr2L_4_17100001 chr2L_17100001 RAL-819 644 chr2L 17101895 17101916 chr2L 17101978 17102018 12 100 16.5 14.0 15.2 0.7 123 chr2L 17101895 intergenic not near genes chr2L 17101956 intergenic not near genes chr2L 17102018 intergenic not near genes chr2L_12_17100001 chr2L_17100001 RAL-819 645 chr2L 17120816 17120875 chr2L 17120920 17120977 41 103 14.5 12.0 13.2 2.9 161 chr2L 17120816 intergenic not near genes chr2L 17120896 intergenic not near genes chr2L 17120977 intergenic not near genes chr2L_41_17120001 chr2L_17120001 RAL-819 646 chr2L 17158705 17158757 chr2L 17158833 17158885 35 126 19.0 10.0 14.5 2.3 180 chr2L 17158705 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158795 intron,intron CG34106 +,beat-IIIa + chr2L 17158885 intron,intron CG34106 +,beat-IIIa + chr2L_35_17155001 chr2L_17155001 RAL-819 647 chr2L 17167540 17167595 chr2L 17167806 17167861 pogo 20 261 9.5 9.5 9.5 1.9 321 chr2L 17167540 intron,intron CG34106 +,beat-IIIa + chr2L 17167700 intron,intron CG34106 +,beat-IIIa + chr2L 17167861 intron,intron CG34106 +,beat-IIIa + chr2L_20_17165001 chr2L_17165001 RAL-819 648 chr2L 17193878 17193883 chr2L 17193990 17193995 4 112 0.0 0.5 0.2 3.3 117 chr2L 17193878 intron beat-IIIc - chr2L 17193936 intron beat-IIIc - chr2L 17193995 intron beat-IIIc - chr2L_4_17190001 chr2L_17190001 RAL-819 649 chr2L 17199138 17199186 chr2L 17200630 17200635 hobo 27 1490 7.5 5.5 6.5 3.6 1497 chr2L 17199138 intron beat-IIIc - chr2L 17199886 intron beat-IIIc - chr2L 17200635 intron beat-IIIc - chr2L_27_17195001 chr2L_17195001 RAL-819 650 chr2L 17226082 17226131 chr2L 17226181 17226217 14 94 8.5 9.5 9.0 1.4 135 chr2L 17226082 intron beat-IIIc - chr2L 17226150 intron beat-IIIc - chr2L 17226217 intron beat-IIIc - chr2L_14_17225001 chr2L_17225001 RAL-819 651 chr2L 17260856 17260885 chr2L 17260964 17260983 24 106 17.0 5.5 11.2 2.0 127 chr2L 17260856 intergenic beat-IIIc - chr2L 17260920 intergenic beat-IIIc - chr2L 17260983 intergenic beat-IIIc - chr2L_24_17260001 chr2L_17260001 RAL-819 652 chr2L 17273171 17273223 chr2L 17277979 17278031 F-element 35 4807 9.5 8.5 9.0 3.5 4860 chr2L 17273171 intergenic not near genes chr2L 17275601 intergenic not near genes chr2L 17278031 intergenic not near genes chr2L_35_17275001 chr2L_17275001 RAL-819 653 chr2L 17303411 17303470 chr2L 17303614 17303649 45 193 11.5 9.0 10.2 4.0 238 chr2L 17303411 intergenic not near genes chr2L 17303530 intergenic not near genes chr2L 17303649 intergenic not near genes chr2L_45_17300001 chr2L_17300001 RAL-819 654 chr2L 17327889 17327928 chr2L 17328000 17328039 34 108 12.0 18.0 15.0 2.1 150 chr2L 17327889 intergenic not near genes chr2L 17327964 intergenic not near genes chr2L 17328039 intergenic not near genes chr2L_34_17325001 chr2L_17325001 RAL-819 655 chr2L 17335507 17335532 chr2L 17336713 17336738 1360 7 1206 4.5 12.0 8.2 0.8 1231 chr2L 17335507 intergenic not near genes chr2L 17336122 intergenic not near genes chr2L 17336738 intergenic not near genes chr2L_7_17335001 chr2L_17335001 RAL-819 656 chr2L 17351924 17351955 chr2L 17352051 17352082 15 125 10.0 13.5 11.8 1.2 158 chr2L 17351924 intergenic not near genes chr2L 17352003 intergenic not near genes chr2L 17352082 intergenic not near genes chr2L_15_17350001 chr2L_17350001 RAL-819 657 chr2L 17360000 17360050 chr2L 17360203 17360237 32 202 9.0 2.0 5.5 4.9 237 chr2L 17360000 intergenic not near genes chr2L 17360118 intergenic not near genes chr2L 17360237 intergenic not near genes chr2L_32_17360001 chr2L_17360001 RAL-819 658 chr2L 17379686 17379705 chr2L 17379796 17379815 12 110 5.0 12.0 8.5 1.3 129 chr2L 17379686 intron Lrch - chr2L 17379750 intron Lrch - chr2L 17379815 intron Lrch - chr2L_12_17375001 chr2L_17375001 RAL-819 659 chr2L 17397990 17398030 chr2L 17398098 17398111 27 112 0.0 10.5 5.2 4.4 121 chr2L 17397990 intron CLIP-190 + chr2L 17398050 intron CLIP-190 + chr2L 17398111 intron CLIP-190 + chr2L_27_17395001 chr2L_17395001 RAL-819 660 chr2L 17432008 17432035 chr2L 17432140 17432167 1360 26 131 0.0 12.5 6.2 3.6 159 chr2L 17432008 intron Dif - chr2L 17432088 intron Dif - chr2L 17432167 intron Dif - chr2L_26_17430001 chr2L_17430001 RAL-819 661 chr2L 17511610 17511660 chr2L 17511777 17511826 11 166 9.0 8.0 8.5 1.2 216 chr2L 17511610 intron Dhc36C + chr2L 17511718 intron Dhc36C + chr2L 17511826 exon Dhc36C + chr2L_11_17510001 chr2L_17510001 RAL-819 662 chr2L 17533411 17533445 chr2L 17533523 17533557 14 110 10.0 6.5 8.2 1.5 146 chr2L 17533411 intergenic not near genes chr2L 17533484 intergenic not near genes chr2L 17533557 intergenic not near genes chr2L_14_17530001 chr2L_17530001 RAL-819 663 chr2L 17545008 17545012 chr2L 18689648 18689652 4 1144640 5.5 36.0 20.8 0.2 1144644 chr2L 17545008 intergenic not near genes chr2L 18117330 intergenic not near genes chr2L 18689652 5` UTR CG10336 + chr2L_4_18115001 chr2L_18115001 RAL-819 664 chr2L 17551313 17551323 chr2L 17551432 17551442 6 119 8.5 0.5 4.5 1.1 129 chr2L 17551313 intergenic not near genes chr2L 17551378 intergenic not near genes chr2L 17551442 intergenic not near genes chr2L_6_17550001 chr2L_17550001 RAL-819 665 chr2L 17571150 17571152 chr2L 17571252 17571260 4 106 0.0 27.5 13.8 0.3 110 chr2L 17571150 intergenic not near genes chr2L 17571205 intergenic not near genes chr2L 17571260 intergenic not near genes chr2L_4_17570001 chr2L_17570001 RAL-819 666 chr2L 17571154 17571159 chr2L 17571245 17571267 7 104 0.0 22.5 11.2 0.6 113 chr2L 17571154 intergenic not near genes chr2L 17571210 intergenic not near genes chr2L 17571267 intergenic not near genes chr2L_7_17570001 chr2L_17570001 RAL-819 667 chr2L 17577715 17577738 chr2L 17577811 17577839 15 101 13.5 16.5 15.0 0.9 124 chr2L 17577715 intergenic not near genes chr2L 17577777 intergenic not near genes chr2L 17577839 intergenic not near genes chr2L_15_17575001 chr2L_17575001 RAL-819 668 chr2L 17607459 17607468 chr2L 17607582 17607591 11 122 21.5 3.0 12.2 0.8 132 chr2L 17607459 intergenic CR44412 - chr2L 17607525 intergenic CR44412 - chr2L 17607591 intergenic CR44412 - chr2L_11_17605001 chr2L_17605001 RAL-819 669 chr2L 17607469 17607475 chr2L 17607580 17607590 7 120 19.5 3.0 11.2 0.6 121 chr2L 17607469 intergenic CR44412 - chr2L 17607530 intergenic CR44412 - chr2L 17607590 intergenic CR44412 - chr2L_7_17605001 chr2L_17605001 RAL-819 670 chr2L 17637146 17637200 chr2L 17637256 17637310 35 109 9.0 13.0 11.0 2.9 164 chr2L 17637146 intergenic not near genes chr2L 17637228 intergenic not near genes chr2L 17637310 intergenic not near genes chr2L_35_17635001 chr2L_17635001 RAL-819 671 chr2L 17643301 17643358 chr2L 17643612 17643632 28 309 8.0 8.5 8.2 3.0 331 chr2L 17643301 intergenic not near genes chr2L 17643466 intergenic not near genes chr2L 17643632 intergenic not near genes chr2L_28_17640001 chr2L_17640001 RAL-819 672 chr2L 17669089 17669095 chr2L 17669191 17669197 7 102 23.0 21.0 22.0 0.3 108 chr2L 17669089 intron CadN - chr2L 17669143 intron CadN - chr2L 17669197 intron CadN - chr2L_7_17665001 chr2L_17665001 RAL-819 673 chr2L 17669097 17669122 chr2L 17669189 17669224 20 96 15.0 20.5 17.8 1.1 127 chr2L 17669097 intron CadN - chr2L 17669160 intron CadN - chr2L 17669224 intron CadN - chr2L_20_17665001 chr2L_17665001 RAL-819 674 chr2L 17687492 17687522 chr2L 17692262 17692292 F-element 23 4769 9.5 11.5 10.5 2.0 4800 chr2L 17687492 intron CadN - chr2L 17689892 intron CadN - chr2L 17692292 intron CadN - chr2L_23_17685001 chr2L_17685001 RAL-819 675 chr2L 17727843 17727881 chr2L 17729335 17729363 hobo 20 1485 7.5 14.5 11.0 1.7 1520 chr2L 17727843 intron CadN - chr2L 17728603 intron CadN - chr2L 17729363 intron CadN - chr2L_20_17725001 chr2L_17725001 RAL-819 676 chr2L 17741748 17741765 chr2L 17741838 17741875 12 105 7.5 10.5 9.0 1.2 127 chr2L 17741748 intron CadN - chr2L 17741812 intron CadN - chr2L 17741875 intron CadN - chr2L_12_17740001 chr2L_17740001 RAL-819 677 chr2L 17741767 17741768 chr2L 17741836 17741878 4 92 6.5 9.5 8.0 0.4 111 chr2L 17741767 intron CadN - chr2L 17741822 intron CadN - chr2L 17741878 intron CadN - chr2L_4_17740001 chr2L_17740001 RAL-819 678 chr2L 17745942 17745980 chr2L 17747367 17747405 39 1424 9.0 12.5 10.8 3.3 1463 chr2L 17745942 intron CadN - chr2L 17746674 intron CadN - chr2L 17747405 intron CadN - chr2L_39_17745001 chr2L_17745001 RAL-819 679 chr2L 17819899 17819956 chr2L 17825127 17825184 copia 25 5224 10.5 9.0 9.8 2.3 5285 chr2L 17819899 intron CadN2 - chr2L 17822542 intron CadN2 - chr2L 17825184 intron CadN2 - chr2L_25_17820001 chr2L_17820001 RAL-819 680 chr2L 17863618 17863631 chr2L 17863798 17863805 6 179 6.5 7.5 7.0 0.8 187 chr2L 17863618 intron CadN2 - chr2L 17863712 intron CadN2 - chr2L 17863805 intron CadN2 - chr2L_6_17860001 chr2L_17860001 RAL-819 681 chr2L 17880570 17880621 chr2L 17880707 17880758 19 137 6.5 11.0 8.8 1.9 188 chr2L 17880570 intergenic not near genes chr2L 17880664 intergenic not near genes chr2L 17880758 intergenic not near genes chr2L_19_17880001 chr2L_17880001 RAL-819 682 chr2L 17911939 17911954 chr2L 17914141 17914157 pogo 9 2203 30.5 15.0 22.8 0.4 2218 chr2L 17911939 intergenic not near genes chr2L 17913048 intergenic not near genes chr2L 17914157 intergenic CG43271 - chr2L_9_17910001 chr2L_17910001 RAL-819 683 chr2L 17911957 17911987 chr2L 17914138 17914190 pogo 29 2200 16.5 13.5 15.0 1.8 2233 chr2L 17911957 intergenic not near genes chr2L 17913074 intergenic not near genes chr2L 17914190 intergenic CG43271 - chr2L_29_17910001 chr2L_17910001 RAL-819 684 chr2L 17944109 17944141 chr2L 17944211 17944242 15 103 15.0 12.0 13.5 1.0 133 chr2L 17944109 intergenic not near genes chr2L 17944176 intergenic not near genes chr2L 17944242 intergenic not near genes chr2L_15_17940001 chr2L_17940001 RAL-819 685 chr2L 17951918 17951978 chr2L 17953410 17953460 hobo 49 1492 12.5 15.0 13.8 3.3 1542 chr2L 17951918 intergenic CR44398 -,CR44397 - chr2L 17952689 intergenic not near genes chr2L 17953460 intergenic not near genes chr2L_49_17950001 chr2L_17950001 RAL-819 686 chr2L 18051870 18051892 chr2L 18061021 18061064 roo 15 9166 25.0 15.5 20.2 0.7 9194 chr2L 18051870 intron rdo + chr2L 18056467 intron rdo + chr2L 18061064 intron rdo + chr2L_15_18055001 chr2L_18055001 RAL-819 687 chr2L 18095564 18095592 chr2L 18095670 18095698 13 105 18.0 12.0 15.0 0.8 134 chr2L 18095564 intergenic not near genes chr2L 18095631 intergenic not near genes chr2L 18095698 intergenic not near genes chr2L_13_18095001 chr2L_18095001 RAL-819 688 chr2L 18111216 18111264 chr2L 18111332 18111355 24 113 15.0 10.0 12.5 1.8 139 chr2L 18111216 intergenic not near genes chr2L 18111286 intergenic not near genes chr2L 18111355 intergenic not near genes chr2L_24_18110001 chr2L_18110001 RAL-819 689 chr2L 18145987 18146040 chr2L 18146100 18146153 39 111 16.5 16.5 16.5 2.2 166 chr2L 18145987 intron Socs36E - chr2L 18146070 intron Socs36E - chr2L 18146153 intron Socs36E - chr2L_39_18145001 chr2L_18145001 RAL-819 690 chr2L 18210208 18210247 chr2L 18210328 18210367 18 118 11.5 11.0 11.2 1.5 159 chr2L 18210208 intron CG42750 - chr2L 18210288 intron CG42750 - chr2L 18210367 intron CG42750 - chr2L_18_18210001 chr2L_18210001 RAL-819 691 chr2L 18218599 18218613 chr2L 18218712 18218726 9 113 1.5 3.5 2.5 2.6 127 chr2L 18218599 intron CG42750 - chr2L 18218662 intron CG42750 - chr2L 18218726 intron CG42750 - chr2L_9_18215001 chr2L_18215001 RAL-819 692 chr2L 18221599 18221654 chr2L 18221701 18221757 18 100 8.0 13.5 10.8 1.5 158 chr2L 18221599 intron CG42750 - chr2L 18221678 intron CG42750 - chr2L 18221757 intron CG42750 - chr2L_18_18220001 chr2L_18220001 RAL-819 693 chr2L 18239935 18239989 chr2L 18240043 18240097 26 108 12.5 4.0 8.2 2.8 162 chr2L 18239935 intron CG42750 - chr2L 18240016 intron CG42750 - chr2L 18240097 intron CG42750 - chr2L_26_18240001 chr2L_18240001 RAL-819 694 chr2L 18243351 18243354 chr2L 18243453 18243456 4 102 27.0 7.5 17.2 0.2 105 chr2L 18243351 intron CG42750 - chr2L 18243404 intron CG42750 - chr2L 18243456 intron CG42750 - chr2L_4_18240001 chr2L_18240001 RAL-819 695 chr2L 18243355 18243384 chr2L 18243452 18243486 25 101 10.0 7.0 8.5 2.6 131 chr2L 18243355 intron CG42750 - chr2L 18243420 intron CG42750 - chr2L 18243486 intron CG42750 - chr2L_25_18240001 chr2L_18240001 RAL-819 696 chr2L 18309457 18309515 chr2L 18309628 18309686 30 170 9.5 6.5 8.0 3.3 229 chr2L 18309457 intergenic CG43354 -,CR44694 + chr2L 18309572 intergenic CR44694 +,CG43354 - chr2L 18309686 5` UTR CR44694 + chr2L_30_18305001 chr2L_18305001 RAL-819 697 chr2L 18315224 18315281 chr2L 18315329 18315381 44 103 9.0 10.5 9.8 4.1 157 chr2L 18315224 intergenic not near genes chr2L 18315302 intergenic not near genes chr2L 18315381 intergenic not near genes chr2L_44_18315001 chr2L_18315001 RAL-819 698 chr2L 18393959 18394013 chr2L 18394064 18394118 24 104 12.5 13.0 12.8 1.7 159 chr2L 18393959 intergenic not near genes chr2L 18394038 intergenic not near genes chr2L 18394118 intergenic not near genes chr2L_24_18390001 chr2L_18390001 RAL-819 699 chr2L 18398394 18398437 chr2L 18398497 18398540 35 102 6.0 12.5 9.2 3.4 146 chr2L 18398394 intergenic not near genes chr2L 18398467 intergenic not near genes chr2L 18398540 intergenic not near genes chr2L_35_18395001 chr2L_18395001 RAL-819 700 chr2L 18408004 18408049 chr2L 18412813 18412813 Doc 21 4806 14.5 0.0 7.2 2.6 4809 chr2L 18408004 intergenic not near genes chr2L 18410408 intergenic not near genes chr2L 18412813 intergenic not near genes chr2L_21_18410001 chr2L_18410001 RAL-819 701 chr2L 18408058 18408060 chr2L 18412810 18412877 Doc 4 4801 11.0 0.0 5.5 0.6 4819 chr2L 18408058 intergenic not near genes chr2L 18410468 intergenic not near genes chr2L 18412877 intergenic not near genes chr2L_4_18410001 chr2L_18410001 RAL-819 702 chr2L 18417990 18417999 chr2L 18418086 18418092 6 98 1.5 27.0 14.2 0.4 102 chr2L 18417990 intergenic not near genes chr2L 18418041 intergenic not near genes chr2L 18418092 intergenic not near genes chr2L_6_18415001 chr2L_18415001 RAL-819 703 chr2L 18441134 18441166 chr2L 18441299 18441329 12 164 7.5 9.5 8.5 1.3 195 chr2L 18441134 intergenic RpS26 - chr2L 18441232 intergenic RpS26 - chr2L 18441329 intergenic RpS26 - chr2L_12_18440001 chr2L_18440001 RAL-819 704 chr2L 18443316 18443367 chr2L 18443425 18443477 25 108 9.0 7.0 8.0 2.8 161 chr2L 18443316 intergenic RpS26 - chr2L 18443396 intergenic RpS26 - chr2L 18443477 intergenic RpS26 - chr2L_25_18440001 chr2L_18440001 RAL-819 705 chr2L 18443592 18443618 chr2L 18443734 18443760 18 140 14.5 10.5 12.5 1.3 168 chr2L 18443592 intergenic RpS26 - chr2L 18443676 intergenic RpS26 - chr2L 18443760 intergenic not near genes chr2L_18_18440001 chr2L_18440001 RAL-819 706 chr2L 18449358 18449417 chr2L 18449484 18449543 39 126 10.5 8.5 9.5 3.7 185 chr2L 18449358 intergenic bsf -,ncm - chr2L 18449450 intergenic bsf -,ncm - chr2L 18449543 3` UTR bsf - chr2L_39_18445001 chr2L_18445001 RAL-819 707 chr2L 18482214 18482264 chr2L 18482321 18482371 23 97 6.0 9.0 7.5 2.7 157 chr2L 18482214 intron CG10283 - chr2L 18482292 intron CG10283 - chr2L 18482371 intron CG10283 - chr2L_23_18480001 chr2L_18480001 RAL-819 708 chr2L 18496414 18496435 chr2L 18496594 18496615 11 179 7.5 18.0 12.8 0.8 201 chr2L 18496414 intron kon - chr2L 18496514 intron kon - chr2L 18496615 intron kon - chr2L_11_18495001 chr2L_18495001 RAL-819 709 chr2L 18496440 18496441 chr2L 18496593 18496613 4 166 6.5 18.0 12.2 0.3 173 chr2L 18496440 intron kon - chr2L 18496526 intron kon - chr2L 18496613 intron kon - chr2L_4_18495001 chr2L_18495001 RAL-819 710 chr2L 18496442 18496445 chr2L 18496592 18496615 12 165 5.5 18.0 11.8 0.9 173 chr2L 18496442 intron kon - chr2L 18496528 intron kon - chr2L 18496615 intron kon - chr2L_12_18495001 chr2L_18495001 RAL-819 711 chr2L 18520733 18520789 chr2L 18525693 18525751 34 4961 78.0 94.5 86.2 0.4 5018 chr2L 18520733 intron CG10211 + chr2L 18523242 intron CG10211 + chr2L 18525751 intron CG10211 + chr2L_34_18520001 chr2L_18520001 RAL-819 712 chr2L 18575606 18575608 chr2L 18575728 18575730 4 122 13.5 0.0 6.8 0.5 124 chr2L 18575606 intron Pde11 - chr2L 18575668 intron Pde11 - chr2L 18575730 intron Pde11 - chr2L_4_18575001 chr2L_18575001 RAL-819 713 chr2L 18577252 18577265 chr2L 18577450 18577458 8 196 30.5 7.5 19.0 0.4 206 chr2L 18577252 intron Pde11 - chr2L 18577355 intron Pde11 - chr2L 18577458 intron Pde11 - chr2L_8_18575001 chr2L_18575001 RAL-819 714 chr2L 18577271 18577305 chr2L 18577449 18577478 22 184 10.5 7.0 8.8 2.2 207 chr2L 18577271 intron Pde11 - chr2L 18577374 intron Pde11 - chr2L 18577478 intron Pde11 - chr2L_22_18575001 chr2L_18575001 RAL-819 715 chr2L 18622661 18622716 chr2L 18622766 18622821 52 93 12.5 13.0 12.8 3.8 160 chr2L 18622661 intron MESR3 + chr2L 18622741 intron MESR3 + chr2L 18622821 intron MESR3 + chr2L_52_18620001 chr2L_18620001 RAL-819 716 chr2L 18629344 18629404 chr2L 18629454 18629469 46 107 10.0 15.0 12.5 3.4 125 chr2L 18629344 intron MESR3 + chr2L 18629406 intron MESR3 + chr2L 18629469 intron MESR3 + chr2L_46_18625001 chr2L_18625001 RAL-819 717 chr2L 18811393 18811438 chr2L 18811500 18811545 31 106 12.5 1.0 6.8 4.0 152 chr2L 18811393 intergenic CG10570 -,CG42502 - chr2L 18811469 intergenic CG10570 -,CG42502 - chr2L 18811545 intergenic not near genes chr2L_31_18810001 chr2L_18810001 RAL-819 718 chr2L 18811642 18811688 chr2L 18811876 18811922 34 232 9.0 11.0 10.0 3.1 280 chr2L 18811642 intergenic not near genes chr2L 18811782 intergenic not near genes chr2L 18811922 intergenic not near genes chr2L_34_18810001 chr2L_18810001 RAL-819 719 chr2L 18812531 18812590 chr2L 18812819 18812878 47 286 2.5 9.5 6.0 6.7 347 chr2L 18812531 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812878 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_47_18810001 chr2L_18810001 RAL-819 720 chr2L 18847869 18847926 chr2L 18848305 18848340 40 433 9.0 12.0 10.5 3.5 471 chr2L 18847869 intron CG17321 + chr2L 18848104 intron CG17321 + chr2L 18848340 intron CG17321 + chr2L_40_18845001 chr2L_18845001 RAL-819 721 chr2L 18883831 18883847 chr2L 18883938 18883954 15 107 22.5 15.5 19.0 0.8 123 chr2L 18883831 intergenic not near genes chr2L 18883892 intergenic not near genes chr2L 18883954 intergenic not near genes chr2L_15_18880001 chr2L_18880001 RAL-819 722 chr2L 18883848 18883889 chr2L 18883934 18883956 27 103 10.5 14.5 12.5 2.0 108 chr2L 18883848 intergenic not near genes chr2L 18883902 intergenic not near genes chr2L 18883956 intergenic not near genes chr2L_27_18880001 chr2L_18880001 RAL-819 723 chr2L 18898371 18898390 chr2L 18898478 18898497 18 104 29.5 0.5 15.0 1.1 126 chr2L 18898371 intergenic not near genes chr2L 18898434 intergenic not near genes chr2L 18898497 intergenic not near genes chr2L_18_18895001 chr2L_18895001 RAL-819 724 chr2L 18898391 18898422 chr2L 18898477 18898529 38 103 15.5 1.0 8.2 4.1 138 chr2L 18898391 intergenic not near genes chr2L 18898460 intergenic not near genes chr2L 18898529 intergenic not near genes chr2L_38_18895001 chr2L_18895001 RAL-819 725 chr2L 19024096 19024097 chr2L 21768291 21768291 17 2744195 64.0 68.0 66.0 0.3 2744195 chr2L 19024096 3` UTR CR43700 - chr2L 20396194 intron CG10947 - chr2L 21768291 intron CG31612 - chr2L_17_20395001 chr2L_20395001 RAL-819 726 chr2L 19077268 19077323 chr2L 19078734 19078784 43 1464 10.5 11.0 10.8 3.6 1516 chr2L 19077268 intergenic CG10700 - chr2L 19078026 exon CG10700 - chr2L 19078784 exon CG10700 - chr2L_43_19075001 chr2L_19075001 RAL-819 727 chr2L 19147345 19147401 chr2L 19154405 19154439 297 41 7058 9.0 12.5 10.8 3.5 7094 chr2L 19147345 intron brat + chr2L 19150892 intron brat + chr2L 19154439 intron brat + chr2L_41_19150001 chr2L_19150001 RAL-819 728 chr2L 19178351 19178374 chr2L 19178471 19178494 12 119 9.0 8.0 8.5 1.3 143 chr2L 19178351 3` UTR brat + chr2L 19178422 3` UTR brat + chr2L 19178494 3` UTR brat + chr2L_12_19175001 chr2L_19175001 RAL-819 729 chr2L 19228431 19228477 chr2L 19229321 19229338 31 888 20.5 1.5 11.0 2.6 907 chr2L 19228431 intergenic not near genes chr2L 19228884 intergenic not near genes chr2L 19229338 intergenic not near genes chr2L_31_19225001 chr2L_19225001 RAL-819 730 chr2L 19246805 19246851 chr2L 19246910 19246945 30 103 14.5 14.5 14.5 1.9 140 chr2L 19246805 intergenic not near genes chr2L 19246875 intergenic not near genes chr2L 19246945 intergenic not near genes chr2L_30_19245001 chr2L_19245001 RAL-819 731 chr2L 19270870 19270928 chr2L 19270985 19271038 19 110 0.0 12.5 6.2 2.6 168 chr2L 19270870 intron CR44190 - chr2L 19270954 intron CR44190 - chr2L 19271038 intron CR44190 - chr2L_19_19270001 chr2L_19270001 RAL-819 732 chr2L 19344995 19345011 chr2L 19357229 19357245 blood 13 12233 40.0 20.0 30.0 0.4 12250 chr2L 19344995 intron dnt - chr2L 19351120 intron dnt - chr2L 19357245 intron dnt - chr2L_13_19350001 chr2L_19350001 RAL-819 733 chr2L 19345013 19345046 chr2L 19357222 19357255 blood 27 12230 17.0 18.5 17.8 1.4 12242 chr2L 19345013 intron dnt - chr2L 19351134 intron dnt - chr2L 19357255 intron dnt - chr2L_27_19350001 chr2L_19350001 RAL-819 734 chr2L 19357521 19357567 chr2L 19357636 19357682 51 113 23.0 23.0 23.0 2.1 161 chr2L 19357521 intron dnt - chr2L 19357602 intron dnt - chr2L 19357682 intron dnt - chr2L_51_19355001 chr2L_19355001 RAL-819 735 chr2L 19364054 19364108 chr2L 19364159 19364213 47 105 13.5 7.5 10.5 4.1 159 chr2L 19364054 intergenic CG13086 + chr2L 19364134 intergenic CG13086 + chr2L 19364213 intergenic CG13086 + chr2L_47_19360001 chr2L_19360001 RAL-819 736 chr2L 19365563 19365565 chr2L 19365656 19365666 4 99 0.0 27.0 13.5 0.3 103 chr2L 19365563 intergenic CG13086 + chr2L 19365614 intergenic CG13086 + chr2L 19365666 intergenic CG13086 + chr2L_4_19365001 chr2L_19365001 RAL-819 737 chr2L 19379187 19379241 chr2L 19379352 19379405 42 162 11.5 11.5 11.5 3.4 218 chr2L 19379187 intergenic not near genes chr2L 19379296 intergenic not near genes chr2L 19379405 intergenic not near genes chr2L_42_19375001 chr2L_19375001 RAL-819 738 chr2L 19405597 19405642 chr2L 19405707 19405757 25 113 7.5 7.5 7.5 2.9 160 chr2L 19405597 intron Pax - chr2L 19405677 intron Pax - chr2L 19405757 intron Pax - chr2L_25_19405001 chr2L_19405001 RAL-819 739 chr2L 19557807 19557821 chr2L 19557924 19557938 4 116 14.5 9.5 12.0 0.3 131 chr2L 19557807 intergenic Tep5 + chr2L 19557872 intergenic Tep5 + chr2L 19557938 intergenic Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-819 740 chr2L 19557823 19557851 chr2L 19557918 19557962 6 105 5.5 9.5 7.5 0.7 139 chr2L 19557823 intergenic Tep5 + chr2L 19557892 intergenic Tep5 + chr2L 19557962 intergenic Tep5 + chr2L_6_19555001 chr2L_19555001 RAL-819 741 chr2L 19558497 19558549 chr2L 19558626 19558678 27 128 0.0 10.0 5.0 4.5 181 chr2L 19558497 intron Tep5 + chr2L 19558588 intron Tep5 + chr2L 19558678 intron Tep5 + chr2L_27_19555001 chr2L_19555001 RAL-819 742 chr2L 19559978 19560039 chr2L 19560256 19560315 26 276 5.5 6.5 6.0 3.7 337 chr2L 19559978 exon Tep5 + chr2L 19560146 exon Tep5 + chr2L 19560315 intron Tep5 + chr2L_26_19560001 chr2L_19560001 RAL-819 743 chr2L 19560819 19560854 chr2L 19560924 19560952 21 102 12.5 0.0 6.2 2.9 133 chr2L 19560819 exon Tep5 + chr2L 19560886 exon Tep5 + chr2L 19560952 exon Tep5 + chr2L_21_19560001 chr2L_19560001 RAL-819 744 chr2L 19561320 19561368 chr2L 19561488 19561534 29 163 10.5 10.0 10.2 2.6 214 chr2L 19561320 exon Tep5 + chr2L 19561427 exon Tep5 + chr2L 19561534 exon Tep5 + chr2L_29_19560001 chr2L_19560001 RAL-819 745 chr2L 19562044 19562083 chr2L 19562144 19562188 33 106 11.5 12.0 11.8 2.6 144 chr2L 19562044 exon Tep5 + chr2L 19562116 intron Tep5 + chr2L 19562188 exon Tep5 + chr2L_33_19560001 chr2L_19560001 RAL-819 746 chr2L 19620070 19620083 chr2L 19621084 19621097 jockey 15 1013 37.5 10.5 24.0 0.6 1027 chr2L 19620070 intron Lar + chr2L 19620584 intron Lar + chr2L 19621097 intron Lar + chr2L_15_19620001 chr2L_19620001 RAL-819 747 chr2L 19620085 19620128 chr2L 19621079 19621142 jockey 41 1012 16.0 9.5 12.8 3.0 1057 chr2L 19620085 intron Lar + chr2L 19620614 intron Lar + chr2L 19621142 intron Lar + chr2L_41_19620001 chr2L_19620001 RAL-819 748 chr2L 19652553 19652559 chr2L 19674012 19674018 opus 4 21459 30.5 16.0 23.2 0.2 21465 chr2L 19652553 intron Lar + chr2L 19663286 intron Lar + chr2L 19674018 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-819 749 chr2L 19652567 19652601 chr2L 19674006 19674049 opus 28 21453 16.5 15.0 15.8 1.7 21482 chr2L 19652567 intron Lar + chr2L 19663308 intron Lar + chr2L 19674049 intron Lar + chr2L_28_19660001 chr2L_19660001 RAL-819 750 chr2L 17631908 17631911 chr2L 19689114 19689117 4 2057206 14.0 62.0 38.0 0.1 2057209 chr2L 17631908 intergenic not near genes chr2L 18660512 exon MESR3 + chr2L 19689117 intron Lar + chr2L_4_18660001 chr2L_18660001 RAL-819 751 chr2L 19703517 19703518 chr2L 19712678 19712679 roo 4 9161 38.5 19.5 29.0 0.1 9162 chr2L 19703517 intron Lar + chr2L 19708098 intron Lar + chr2L 19712679 intron Lar + chr2L_4_19705001 chr2L_19705001 RAL-819 752 chr2L 19703519 19703570 chr2L 19712676 19712687 roo 46 9157 14.0 18.5 16.2 2.7 9168 chr2L 19703519 intron Lar + chr2L 19708103 intron Lar + chr2L 19712687 intron Lar + chr2L_46_19705001 chr2L_19705001 RAL-819 753 chr2L 19762785 19762788 chr2L 19763052 19763055 pogo 5 267 49.0 13.0 31.0 0.2 270 chr2L 19762785 exon fbp - chr2L 19762920 intron fbp - chr2L 19763055 intron fbp - chr2L_5_19760001 chr2L_19760001 RAL-819 754 chr2L 19762789 19762839 chr2L 19763049 19763106 pogo 41 266 16.0 11.5 13.8 2.8 317 chr2L 19762789 exon fbp - chr2L 19762948 intron fbp - chr2L 19763106 intron fbp - chr2L_41_19760001 chr2L_19760001 RAL-819 755 chr2L 19765110 19765148 chr2L 19765270 19765308 5 160 0.0 23.0 11.5 0.4 198 chr2L 19765110 intergenic not near genes chr2L 19765209 intergenic not near genes chr2L 19765308 intergenic bsh - chr2L_5_19765001 chr2L_19765001 RAL-819 756 chr2L 19773140 19773189 chr2L 19773252 19773297 32 111 16.5 10.5 13.5 2.2 157 chr2L 19773140 intergenic not near genes chr2L 19773218 intergenic not near genes chr2L 19773297 intergenic not near genes chr2L_32_19770001 chr2L_19770001 RAL-819 757 chr2L 19776636 19776659 chr2L 19776741 19776764 21 104 29.0 14.0 21.5 0.9 128 chr2L 19776636 3` UTR CdGAPr - chr2L 19776700 3` UTR CdGAPr - chr2L 19776764 3` UTR CdGAPr - chr2L_21_19775001 chr2L_19775001 RAL-819 758 chr2L 19824395 19824436 chr2L 19824503 19824521 30 107 11.0 19.0 15.0 1.9 126 chr2L 19824395 intron sick + chr2L 19824458 intron sick + chr2L 19824521 intron sick + chr2L_30_19820001 chr2L_19820001 RAL-819 759 chr2L 19837255 19837259 chr2L 19837360 19837364 4 105 37.5 14.0 25.8 0.1 109 chr2L 19837255 intron sick + chr2L 19837310 intron sick + chr2L 19837364 intron sick + chr2L_4_19835001 chr2L_19835001 RAL-819 760 chr2L 19837261 19837308 chr2L 19837358 19837387 37 102 14.0 12.0 13.0 2.6 126 chr2L 19837261 intron sick + chr2L 19837324 intron sick + chr2L 19837387 intron sick + chr2L_37_19835001 chr2L_19835001 RAL-819 761 chr2L 19846235 19846277 chr2L 19846326 19846383 38 104 1.5 13.5 7.5 4.5 148 chr2L 19846235 intron sick + chr2L 19846309 intron sick + chr2L 19846383 intron sick + chr2L_38_19845001 chr2L_19845001 RAL-819 762 chr2L 19901466 19901518 chr2L 19901594 19901646 36 126 9.5 15.0 12.2 2.7 180 chr2L 19901466 intron sick + chr2L 19901556 intron sick + chr2L 19901646 intron sick + chr2L_36_19900001 chr2L_19900001 RAL-819 763 chr2L 19911265 19911320 chr2L 19911378 19911433 39 111 10.0 16.0 13.0 2.8 168 chr2L 19911265 intron,3` UTR sick +,CR43097 - chr2L 19911349 intron,3` UTR sick +,CR43097 - chr2L 19911433 intron,3` UTR sick +,CR43097 - chr2L_39_19910001 chr2L_19910001 RAL-819 764 chr2L 19935218 19935261 chr2L 19935320 19935357 26 96 12.5 27.5 20.0 1.2 139 chr2L 19935218 intron sick + chr2L 19935288 intron sick + chr2L 19935357 intron sick + chr2L_26_19935001 chr2L_19935001 RAL-819 765 chr2L 19950184 19950198 chr2L 19950291 19950305 12 107 13.0 0.5 6.8 1.5 121 chr2L 19950184 intron sick + chr2L 19950244 intron sick + chr2L 19950305 intron sick + chr2L_12_19950001 chr2L_19950001 RAL-819 766 chr2L 20005849 20005905 chr2L 20010950 20011006 flea 45 5100 11.0 16.0 13.5 3.1 5157 chr2L 20005849 intron CG43861 - chr2L 20008428 intron CG43861 - chr2L 20011006 intron CG43861 - chr2L_45_20005001 chr2L_20005001 RAL-819 767 chr2L 20022068 20022124 chr2L 20022206 20022261 38 137 6.0 10.5 8.2 4.1 193 chr2L 20022068 intergenic not near genes chr2L 20022164 intergenic not near genes chr2L 20022261 intergenic not near genes chr2L_38_20020001 chr2L_20020001 RAL-819 768 chr2L 20034603 20034641 chr2L 20034714 20034752 14 108 0.0 10.0 5.0 2.3 149 chr2L 20034603 intron sNPF + chr2L 20034678 intron sNPF + chr2L 20034752 intron sNPF + chr2L_14_20030001 chr2L_20030001 RAL-819 769 chr2L 20041157 20041168 chr2L 20041321 20041338 9 169 1.0 11.5 6.2 1.2 181 chr2L 20041157 intron sNPF + chr2L 20041248 intron sNPF + chr2L 20041338 intron sNPF + chr2L_9_20040001 chr2L_20040001 RAL-819 770 chr2L 20041169 20041208 chr2L 20041319 20041378 29 166 0.0 11.0 5.5 4.5 209 chr2L 20041169 intron sNPF + chr2L 20041274 intron sNPF + chr2L 20041378 intron sNPF + chr2L_29_20040001 chr2L_20040001 RAL-819 771 chr2L 20045181 20045195 chr2L 20045289 20045303 11 108 0.0 0.0 0.0 11.0 122 chr2L 20045181 intron sNPF + chr2L 20045242 intron sNPF + chr2L 20045303 intron sNPF + chr2L_11_20045001 chr2L_20045001 RAL-819 772 chr2L 20119495 20119512 chr2L 20119596 20119599 5 94 9.0 18.5 13.8 0.3 104 chr2L 20119495 intergenic not near genes chr2L 20119547 intergenic not near genes chr2L 20119599 intergenic not near genes chr2L_5_20115001 chr2L_20115001 RAL-819 773 chr2L 20122612 20122650 chr2L 20122727 20122766 16 114 11.5 10.5 11.0 1.3 154 chr2L 20122612 intergenic not near genes chr2L 20122689 intergenic not near genes chr2L 20122766 intergenic not near genes chr2L_16_20120001 chr2L_20120001 RAL-819 774 chr2L 20124304 20124358 chr2L 20124407 20124461 37 102 14.5 23.0 18.8 1.9 157 chr2L 20124304 intergenic not near genes chr2L 20124382 intergenic not near genes chr2L 20124461 intergenic not near genes chr2L_37_20120001 chr2L_20120001 RAL-819 775 chr2L 20250906 20250933 chr2L 20251006 20251036 20 99 27.0 15.0 21.0 0.9 130 chr2L 20250906 intergenic not near genes chr2L 20250971 intergenic not near genes chr2L 20251036 intergenic not near genes chr2L_20_20250001 chr2L_20250001 RAL-819 776 chr2L 20250935 20250957 chr2L 20251001 20251033 17 95 15.5 13.5 14.5 1.1 98 chr2L 20250935 intergenic not near genes chr2L 20250984 intergenic not near genes chr2L 20251033 intergenic not near genes chr2L_17_20250001 chr2L_20250001 RAL-819 777 chr2L 20272090 20272142 chr2L 20282826 20282874 copia 47 10734 15.5 16.5 16.0 2.8 10784 chr2L 20272090 intergenic not near genes chr2L 20277482 intergenic not near genes chr2L 20282874 intergenic not near genes chr2L_47_20275001 chr2L_20275001 RAL-819 778 chr2L 20302169 20302221 chr2L 20302273 20302325 36 102 17.0 10.5 13.8 2.4 156 chr2L 20302169 intergenic not near genes chr2L 20302247 intergenic not near genes chr2L 20302325 intergenic not near genes chr2L_36_20300001 chr2L_20300001 RAL-819 779 chr2L 20303159 20303187 chr2L 20310652 20310680 blood 16 7493 4.5 21.5 13.0 1.1 7521 chr2L 20303159 intergenic not near genes chr2L 20306920 intergenic not near genes chr2L 20310680 intergenic not near genes chr2L_16_20305001 chr2L_20305001 RAL-819 780 chr2L 20310873 20310890 chr2L 20310978 20310995 9 105 7.5 19.0 13.2 0.6 122 chr2L 20310873 intergenic spir + chr2L 20310934 intergenic spir + chr2L 20310995 intergenic spir + chr2L_9_20310001 chr2L_20310001 RAL-819 781 chr2L 20320017 20320066 chr2L 20320146 20320210 23 137 13.5 0.0 6.8 2.9 193 chr2L 20320017 intron spir + chr2L 20320114 intron spir + chr2L 20320210 intron spir + chr2L_23_20320001 chr2L_20320001 RAL-819 782 chr2L 20372202 20372245 chr2L 20372468 20372511 pogo 41 265 2.5 16.0 9.2 4.0 309 chr2L 20372202 intergenic Ugt37a1 - chr2L 20372356 intergenic Ugt37a1 - chr2L 20372511 exon Ugt37a1 - chr2L_41_20370001 chr2L_20370001 RAL-819 783 chr2L 20488689 20488711 chr2L 20488880 20488900 14 191 15.5 5.5 10.5 1.2 211 chr2L 20488689 5` UTR CR45360 + chr2L 20488794 intergenic CR45360 + chr2L 20488900 intergenic CR45360 +,CR45359 + chr2L_14_20485001 chr2L_20485001 RAL-819 784 chr2L 20498664 20498708 chr2L 20498788 20498832 34 123 14.5 16.0 15.2 2.1 168 chr2L 20498664 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498832 intergenic not near genes chr2L_34_20495001 chr2L_20495001 RAL-819 785 chr2L 20524155 20524171 chr2L 20524264 20524280 11 109 25.0 0.0 12.5 0.8 125 chr2L 20524155 intergenic not near genes chr2L 20524218 intergenic not near genes chr2L 20524280 intergenic not near genes chr2L_11_20520001 chr2L_20520001 RAL-819 786 chr2L 20550607 20550666 chr2L 20550716 20550754 10 107 10.5 18.0 14.2 0.7 147 chr2L 20550607 intergenic not near genes chr2L 20550680 intergenic not near genes chr2L 20550754 intergenic not near genes chr2L_10_20550001 chr2L_20550001 RAL-819 787 chr2L 20553162 20553220 chr2L 20553263 20553301 50 99 13.5 12.0 12.8 3.6 139 chr2L 20553162 intergenic not near genes chr2L 20553232 intergenic not near genes chr2L 20553301 intergenic not near genes chr2L_50_20550001 chr2L_20550001 RAL-819 788 chr2L 20568637 20568686 chr2L 20569052 20569093 X-element 39 413 11.0 9.0 10.0 3.5 456 chr2L 20568637 intron CR45347 + chr2L 20568865 intron CR45347 + chr2L 20569093 intron CR45347 + chr2L_39_20565001 chr2L_20565001 RAL-819 789 chr2L 20576194 20576251 chr2L 20583687 20583734 blood 38 7490 8.0 11.0 9.5 3.6 7540 chr2L 20576194 intergenic CR45347 + chr2L 20579964 intergenic not near genes chr2L 20583734 3` UTR CR44909 - chr2L_38_20575001 chr2L_20575001 RAL-819 790 chr2L 20601760 20601813 chr2L 20601863 20601916 43 102 12.0 7.0 9.5 4.1 156 chr2L 20601760 intron CR44909 - chr2L 20601838 intron CR44909 - chr2L 20601916 intron CR44909 - chr2L_43_20600001 chr2L_20600001 RAL-819 791 chr2L 20602712 20602749 chr2L 20602825 20602862 27 112 4.0 18.0 11.0 2.2 150 chr2L 20602712 intron CR44909 - chr2L 20602787 intron CR44909 - chr2L 20602862 intron CR44909 - chr2L_27_20600001 chr2L_20600001 RAL-819 792 chr2L 20607627 20607672 chr2L 20607715 20607760 29 86 14.5 12.0 13.2 2.0 133 chr2L 20607627 intron,3` UTR CR44909 -,CR43608 - chr2L 20607694 intron,3` UTR CR44909 -,CR43608 - chr2L 20607760 intron,3` UTR CR44909 -,CR43608 - chr2L_29_20605001 chr2L_20605001 RAL-819 793 chr2L 20638375 20638406 chr2L 20638495 20638524 21 116 10.0 22.5 16.2 1.2 149 chr2L 20638375 intergenic not near genes chr2L 20638450 intergenic not near genes chr2L 20638524 intergenic not near genes chr2L_21_20635001 chr2L_20635001 RAL-819 794 chr2L 20668670 20668713 chr2L 20668771 20668814 31 100 13.5 21.5 17.5 1.7 144 chr2L 20668670 intron CG31678 - chr2L 20668742 intron CG31678 - chr2L 20668814 intron CG31678 - chr2L_31_20665001 chr2L_20665001 RAL-819 795 chr2L 20674802 20674863 chr2L 20674912 20674966 36 105 5.5 0.0 2.8 9.5 164 chr2L 20674802 intron CG31678 - chr2L 20674884 intron CG31678 - chr2L 20674966 intron CG31678 - chr2L_36_20670001 chr2L_20670001 RAL-819 796 chr2L 20676082 20676134 chr2L 20676198 20676251 34 116 20.5 18.0 19.2 1.7 169 chr2L 20676082 5` UTR ik2 + chr2L 20676166 intron ik2 + chr2L 20676251 5` UTR ik2 + chr2L_34_20675001 chr2L_20675001 RAL-819 797 chr2L 20695770 20695829 chr2L 20695883 20695942 55 111 13.5 14.0 13.8 3.7 172 chr2L 20695770 intron Hr38 - chr2L 20695856 intron Hr38 - chr2L 20695942 intron Hr38 - chr2L_55_20695001 chr2L_20695001 RAL-819 798 chr2L 20780973 20780980 chr2L 20781107 20781114 5 134 33.0 13.5 23.2 0.2 141 chr2L 20780973 intron cad + chr2L 20781044 intron cad + chr2L 20781114 intron cad + chr2L_5_20780001 chr2L_20780001 RAL-819 799 chr2L 20780982 20781024 chr2L 20781105 20781148 39 128 12.5 13.0 12.8 2.8 166 chr2L 20780982 intron cad + chr2L 20781065 intron cad + chr2L 20781148 intron cad + chr2L_39_20780001 chr2L_20780001 RAL-819 800 chr2L 20791855 20791907 chr2L 20791976 20792025 59 114 13.0 13.5 13.2 4.2 170 chr2L 20791855 intron vari - chr2L 20791940 intron vari - chr2L 20792025 intron vari - chr2L_59_20790001 chr2L_20790001 RAL-819 801 chr2L 20791908 20791911 chr2L 20791971 20791987 5 89 10.5 12.0 11.2 0.4 79 chr2L 20791908 intron vari - chr2L 20791948 intron vari - chr2L 20791987 intron vari - chr2L_5_20790001 chr2L_20790001 RAL-819 802 chr2L 20818225 20818264 chr2L 20818677 20818716 30 451 13.0 10.5 11.8 2.3 491 chr2L 20818225 exon CheB38a - chr2L 20818470 exon CheB38a - chr2L 20818716 intergenic CheB38a - chr2L_30_20815001 chr2L_20815001 RAL-819 803 chr2L 20818268 20818280 chr2L 20818674 20818732 13 445 7.0 9.0 8.0 1.4 464 chr2L 20818268 intron CheB38a - chr2L 20818500 exon CheB38a - chr2L 20818732 intergenic CheB38a - chr2L_13_20815001 chr2L_20815001 RAL-819 804 chr2L 20819087 20819145 chr2L 20819196 20819254 38 108 7.5 11.0 9.2 3.7 167 chr2L 20819087 intergenic not near genes chr2L 20819170 intergenic not near genes chr2L 20819254 intergenic not near genes chr2L_38_20815001 chr2L_20815001 RAL-819 805 chr2L 20821474 20821522 chr2L 20821647 20821695 53 171 17.0 11.0 14.0 3.5 221 chr2L 20821474 intergenic not near genes chr2L 20821584 intergenic not near genes chr2L 20821695 intergenic not near genes chr2L_53_20820001 chr2L_20820001 RAL-819 806 chr2L 20835788 20835793 chr2L 20836530 20836535 Quasimodo 8 742 32.5 17.5 25.0 0.3 747 chr2L 20835788 5` UTR Oseg5 - chr2L 20836162 intergenic Oseg5 -,Spn38F - chr2L 20836535 intergenic Spn38F - chr2L_8_20835001 chr2L_20835001 RAL-819 807 chr2L 20835795 20835840 chr2L 20836524 20836582 Quasimodo 36 741 13.0 15.5 14.2 2.4 787 chr2L 20835795 5` UTR Oseg5 - chr2L 20836188 intergenic Oseg5 -,Spn38F - chr2L 20836582 intergenic Spn38F - chr2L_36_20835001 chr2L_20835001 RAL-819 808 chr2L 20840012 20840020 chr2L 20840239 20840257 7 232 34.5 11.0 22.8 0.3 245 chr2L 20840012 intergenic not near genes chr2L 20840134 intergenic not near genes chr2L 20840257 intergenic CG31676 + chr2L_7_20840001 chr2L_20840001 RAL-819 809 chr2L 20840021 20840058 chr2L 20840238 20840295 36 233 9.5 10.0 9.8 3.3 274 chr2L 20840021 intergenic not near genes chr2L 20840158 intergenic not near genes chr2L 20840295 intergenic CG31676 + chr2L_36_20840001 chr2L_20840001 RAL-819 810 chr2L 20842123 20842173 chr2L 20842272 20842322 43 145 11.0 16.5 13.8 2.9 199 chr2L 20842123 intron CG31676 + chr2L 20842222 intron CG31676 + chr2L 20842322 intron CG31676 + chr2L_43_20840001 chr2L_20840001 RAL-819 811 chr2L 20852383 20852440 chr2L 20852494 20852551 24 104 5.5 5.0 5.2 3.9 168 chr2L 20852383 intergenic twit + chr2L 20852467 intergenic twit + chr2L 20852551 intergenic twit + chr2L_24_20850001 chr2L_20850001 RAL-819 812 chr2L 20862581 20862592 chr2L 20862703 20862714 6 122 0.0 21.5 10.8 0.5 133 chr2L 20862581 intergenic not near genes chr2L 20862648 intergenic not near genes chr2L 20862714 intergenic not near genes chr2L_6_20860001 chr2L_20860001 RAL-819 813 chr2L 20891513 20891544 chr2L 20896635 20896670 jockey 25 5124 5.5 10.5 8.0 2.8 5157 chr2L 20891513 intron,intron CG43739 -,sky - chr2L 20894092 intron,intron CG43739 -,sky - chr2L 20896670 intron,intron CG43739 -,sky - chr2L_25_20890001 chr2L_20890001 RAL-819 814 chr2L 20901470 20901483 chr2L 20902654 20902660 1360 10 1187 0.0 1.0 0.5 6.7 1190 chr2L 20901470 intron,intron CG43739 -,sky - chr2L 20902065 intron,intron CG43739 -,sky - chr2L 20902660 intron,intron CG43739 -,sky - chr2L_10_20900001 chr2L_20900001 RAL-819 815 chr2L 20957699 20957753 chr2L 20957824 20957877 37 114 12.5 16.0 14.2 2.4 178 chr2L 20957699 intergenic not near genes chr2L 20957788 intergenic not near genes chr2L 20957877 intergenic not near genes chr2L_37_20955001 chr2L_20955001 RAL-819 816 chr2L 20976627 20976650 chr2L 20981467 20981490 X-element 19 4840 15.0 18.0 16.5 1.1 4863 chr2L 20976627 intron CG42238 - chr2L 20979058 intron CG42238 - chr2L 20981490 intron CG42238 - chr2L_19_20975001 chr2L_20975001 RAL-819 817 chr2L 20976653 20976659 chr2L 20981458 20981496 X-element 6 4830 13.0 14.0 13.5 0.4 4843 chr2L 20976653 intron CG42238 - chr2L 20979074 intron CG42238 - chr2L 20981496 intron CG42238 - chr2L_6_20975001 chr2L_20975001 RAL-819 818 chr2L 20984722 20984770 chr2L 20984829 20984887 45 114 11.0 11.0 11.0 3.8 165 chr2L 20984722 intron CG42238 - chr2L 20984804 intron CG42238 - chr2L 20984887 intron CG42238 - chr2L_45_20980001 chr2L_20980001 RAL-819 819 chr2L 21001077 21001132 chr2L 21001181 21001236 49 103 12.0 9.5 10.8 4.2 159 chr2L 21001077 intron CG42238 - chr2L 21001156 intron CG42238 - chr2L 21001236 intron CG42238 - chr2L_49_21000001 chr2L_21000001 RAL-819 820 chr2L 21020252 21020306 chr2L 21023954 21023987 NOF 40 3699 9.0 17.5 13.2 2.8 3735 chr2L 21020252 intron CG42238 - chr2L 21022120 intron CG42238 - chr2L 21023987 intron CG42238 - chr2L_40_21020001 chr2L_21020001 RAL-819 821 chr2L 21041115 21041167 chr2L 21049401 21049453 Tirant 40 8285 9.0 12.5 10.8 3.4 8338 chr2L 21041115 intron CG42238 - chr2L 21045284 intron CG42238 - chr2L 21049453 intron CG42238 - chr2L_40_21045001 chr2L_21045001 RAL-819 822 chr2L 21074896 21074952 chr2L 21075011 21075068 36 115 4.5 13.0 8.8 3.7 172 chr2L 21074896 intergenic not near genes chr2L 21074982 intergenic tadr + chr2L 21075068 intergenic tadr + chr2L_36_21070001 chr2L_21070001 RAL-819 823 chr2L 21088892 21088950 chr2L 21089000 21089058 50 104 6.5 9.5 8.0 5.6 166 chr2L 21088892 intergenic ppk13 -,CG9259 + chr2L 21088975 intergenic ppk13 -,CG9259 + chr2L 21089058 intergenic ppk13 -,CG9259 + chr2L_50_21085001 chr2L_21085001 RAL-819 824 chr2L 21152840 21152895 chr2L 21152960 21153011 30 118 11.5 7.5 9.5 2.9 171 chr2L 21152840 intergenic not near genes chr2L 21152926 intergenic not near genes chr2L 21153011 intergenic not near genes chr2L_30_21150001 chr2L_21150001 RAL-819 825 chr2L 21286581 21286603 chr2L 21286684 21286706 16 103 18.5 11.0 14.8 1.0 125 chr2L 21286581 exon Mio - chr2L 21286644 intron Mio - chr2L 21286706 intron Mio - chr2L_16_21285001 chr2L_21285001 RAL-819 826 chr2L 21286604 21286621 chr2L 21286682 21286724 11 100 12.5 11.5 12.0 0.8 120 chr2L 21286604 exon Mio - chr2L 21286664 intron Mio - chr2L 21286724 intron Mio - chr2L_11_21285001 chr2L_21285001 RAL-819 827 chr2L 21286623 21286634 chr2L 21286681 21286738 4 83 8.5 11.5 10.0 0.4 115 chr2L 21286623 intron Mio - chr2L 21286680 intron Mio - chr2L 21286738 intron Mio - chr2L_4_21285001 chr2L_21285001 RAL-819 828 chr2L 21347539 21347582 chr2L 21355022 21355078 blood 24 7494 9.5 9.5 9.5 2.3 7539 chr2L 21347539 intron Tsp39D + chr2L 21351308 intron Tsp39D + chr2L 21355078 intron Tsp39D + chr2L_24_21350001 chr2L_21350001 RAL-819 829 chr2L 21355585 21355637 chr2L 21355753 21355807 37 169 6.0 10.5 8.2 4.0 222 chr2L 21355585 exon Tsp39D + chr2L 21355696 intron Tsp39D + chr2L 21355807 intron Tsp39D + chr2L_37_21355001 chr2L_21355001 RAL-819 830 chr2L 21377456 21377492 chr2L 21378036 21378078 26 584 6.0 6.0 6.0 3.7 622 chr2L 21377456 3` UTR CG8665 + chr2L 21377767 3` UTR CG8665 + chr2L 21378078 intergenic CG8665 + chr2L_26_21375001 chr2L_21375001 RAL-819 831 chr2L 21394362 21394372 chr2L 21394462 21394465 9 99 23.5 1.5 12.5 0.7 103 chr2L 21394362 intergenic not near genes chr2L 21394414 intergenic not near genes chr2L 21394465 intergenic not near genes chr2L_9_21390001 chr2L_21390001 RAL-819 832 chr2L 21394373 21394398 chr2L 21394457 21394502 28 99 14.0 1.5 7.8 3.2 129 chr2L 21394373 intergenic not near genes chr2L 21394438 intergenic not near genes chr2L 21394502 intergenic not near genes chr2L_28_21390001 chr2L_21390001 RAL-819 833 chr2L 21597030 21597055 chr2L 21604799 21604824 roo 10 7769 9.0 11.5 10.2 0.9 7794 chr2L 21597030 intergenic not near genes chr2L 21600927 intergenic not near genes chr2L 21604824 intergenic not near genes chr2L_10_21600001 chr2L_21600001 RAL-819 834 chr2L 21691810 21691834 chr2L 21698299 21698329 Burdock 21 6494 22.0 2.5 12.2 1.6 6519 chr2L 21691810 intron CG31619 + chr2L 21695070 intron CG31619 + chr2L 21698329 intron CG31619 + chr2L_21_21695001 chr2L_21695001 RAL-819 835 chr2L 21754636 21754688 chr2L 21754742 21754789 27 105 10.5 8.0 9.2 2.6 153 chr2L 21754636 intron step - chr2L 21754712 intron step - chr2L 21754789 intron step - chr2L_27_21750001 chr2L_21750001 RAL-819 836 chr2L 21757552 21757598 chr2L 21757658 21757669 35 105 11.0 11.0 11.0 2.9 117 chr2L 21757552 intergenic step -,CG1416 + chr2L 21757610 intergenic step -,CG1416 + chr2L 21757669 intergenic step -,CG1416 + chr2L_35_21755001 chr2L_21755001 RAL-819 837 chr2L 21836370 21836427 chr2L 21836479 21836502 41 108 8.5 12.5 10.5 3.6 132 chr2L 21836370 3` UTR tsh + chr2L 21836436 3` UTR tsh + chr2L 21836502 3` UTR tsh + chr2L_41_21835001 chr2L_21835001 RAL-819 838 chr2L 21855455 21855509 chr2L 21855563 21855621 34 111 9.5 6.5 8.0 3.8 166 chr2L 21855455 intron CR44917 + chr2L 21855538 intron CR44917 + chr2L 21855621 intron CR44917 + chr2L_34_21855001 chr2L_21855001 RAL-819 839 chr2L 21859293 21859352 chr2L 21859398 21859406 66 101 11.5 11.0 11.2 5.4 113 chr2L 21859293 intron CR44917 + chr2L 21859350 intron CR44917 + chr2L 21859406 intron CR44917 + chr2L_66_21855001 chr2L_21855001 RAL-819 840 chr2L 21895702 21895732 chr2L 21895804 21895834 22 101 25.0 3.5 14.2 1.4 132 chr2L 21895702 intergenic CR43762 + chr2L 21895768 intergenic CR43762 + chr2L 21895834 intergenic CR43762 + chr2L_22_21895001 chr2L_21895001 RAL-819 841 chr2L 21933906 21933924 chr2L 21934007 21934019 6 102 29.5 20.5 25.0 0.2 113 chr2L 21933906 intergenic not near genes chr2L 21933962 intergenic not near genes chr2L 21934019 intergenic not near genes chr2L_6_21930001 chr2L_21930001 RAL-819 842 chr2L 21953803 21953814 chr2L 21954679 21954690 5 876 53.0 73.5 63.2 0.1 887 chr2L 21953803 intergenic not near genes chr2L 21954246 intergenic not near genes chr2L 21954690 intergenic not near genes chr2L_5_21950001 chr2L_21950001 RAL-819 843 chr2L 21953795 21953848 chr2L 21954694 21954724 12 881 58.0 72.0 65.0 0.2 929 chr2L 21953795 intergenic not near genes chr2L 21954260 intergenic not near genes chr2L 21954724 intergenic not near genes chr2L_12_21950001 chr2L_21950001 RAL-819 844 chr2L 21981660 21981715 chr2L 21990850 21990880 roo 42 9186 7.0 14.0 10.5 3.7 9220 chr2L 21981660 exon CG2528 - chr2L 21986270 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_42_21985001 chr2L_21985001 RAL-819 845 chr2L 22047228 22047250 chr2L 22047378 22047400 17 149 15.5 19.5 17.5 0.9 172 chr2L 22047228 intergenic not near genes chr2L 22047314 intergenic not near genes chr2L 22047400 intergenic not near genes chr2L_17_22045001 chr2L_22045001 RAL-819 846 chr2L 22058735 22058790 chr2L 22059569 22059624 27 833 5.0 3.0 4.0 5.4 889 chr2L 22058735 intergenic not near genes chr2L 22059180 intergenic not near genes chr2L 22059624 intergenic not near genes chr2L_27_22055001 chr2L_22055001 RAL-819 847 chr2L 22581945 22582002 chr2L 22583759 22583816 S-element 40 1813 15.0 12.5 13.8 2.7 1871 chr2L 22581945 intron CG17494 + chr2L 22582880 intron CG17494 + chr2L 22583816 intron CG17494 + chr2L_40_22580001 chr2L_22580001 RAL-819 848 chr2L 22776396 22776452 chr2L 22778210 22778266 S-element 39 1812 14.0 10.5 12.2 3.0 1870 chr2L 22776396 intergenic not near genes chr2L 22777331 intergenic not near genes chr2L 22778266 intergenic not near genes chr2L_39_22775001 chr2L_22775001 RAL-819 849 chr2L 23233919 23233934 chr2L 23234023 23234023 25 103 63.5 37.0 50.2 0.5 104 chr2L 23233919 intergenic not near genes chr2L 23233971 intergenic not near genes chr2L 23234023 intergenic not near genes chr2L_25_23230001 chr2L_23230001 RAL-819 850 chr2R 469933 469963 chr2R 473199 473229 F-element 8 3260 17.5 11.0 14.2 0.5 3296 chr2R 469933 intergenic not near genes chr2R 471581 intergenic not near genes chr2R 473229 intergenic not near genes chr2R_8_470001 chr2R_470001 RAL-819 851 chr2R 469967 469985 chr2R 473198 473208 F-element 16 3249 15.5 11.0 13.2 1.1 3241 chr2R 469967 intergenic not near genes chr2R 471588 intergenic not near genes chr2R 473208 intergenic not near genes chr2R_16_470001 chr2R_470001 RAL-819 852 chr2R 529322 529354 chr2R 537957 537992 Max-element 10 8644 4.5 9.5 7.0 1.2 8670 chr2R 529322 intron CG40378 + chr2R 533657 intron CG40378 + chr2R 537992 intron CG40378 + chr2R_10_530001 chr2R_530001 RAL-819 853 chr2R 552737 552748 chr2R 553972 553991 1360 5 1239 17.0 7.0 12.0 0.4 1254 chr2R 552737 intron CG40378 + chr2R 553364 intron CG40378 + chr2R 553991 intron CG40378 + chr2R_5_550001 chr2R_550001 RAL-819 854 chr2R 552749 552788 chr2R 553969 553996 1360 25 1215 8.5 5.5 7.0 3.1 1247 chr2R 552749 intron CG40378 + chr2R 553372 intron CG40378 + chr2R 553996 intron CG40378 + chr2R_25_550001 chr2R_550001 RAL-819 855 chr2R 699097 699111 chr2R 705338 705352 297 6 6241 27.0 12.0 19.5 0.3 6255 chr2R 699097 intron CG43676 + chr2R 702224 intron CG43676 + chr2R 705352 intron CG43676 + chr2R_6_700001 chr2R_700001 RAL-819 856 chr2R 1082365 1082375 chr2R 1087130 1087176 Doc 7 4777 20.5 15.0 17.8 0.4 4811 chr2R 1082365 intron rl + chr2R 1084770 intron rl + chr2R 1087176 intron rl + chr2R_7_1080001 chr2R_1080001 RAL-819 857 chr2R 1082376 1082382 chr2R 1087127 1087183 Doc 9 4787 16.5 14.0 15.2 0.6 4807 chr2R 1082376 intron rl + chr2R 1084780 intron rl + chr2R 1087183 intron rl + chr2R_9_1080001 chr2R_1080001 RAL-819 858 chr2R 1340066 1340080 chr2R 1340169 1340195 8 112 40.5 37.5 39.0 0.2 129 chr2R 1340066 intergenic not near genes chr2R 1340130 intergenic not near genes chr2R 1340195 intergenic not near genes chr2R_8_1340001 chr2R_1340001 RAL-819 859 chr2R 1513944 1513980 chr2R 1514102 1514158 38 173 167.0 153.0 160.0 0.2 214 chr2R 1513944 3` UTR Maf1 - chr2R 1514051 3` UTR Maf1 - chr2R 1514158 3` UTR Maf1 - chr2R_38_1510001 chr2R_1510001 RAL-819 860 chr2R 1516580 1516603 chr2R 1521333 1521356 1731 34 4752 53.5 27.5 40.5 0.8 4776 chr2R 1516580 exon Maf1 - chr2R 1518968 intron Maf1 - chr2R 1521356 5` UTR Maf1 - chr2R_34_1515001 chr2R_1515001 RAL-819 861 chr2R 1982172 1982173 chr2R 11659119 11659156 5 9676971 31.0 30.0 30.5 0.2 9676984 chr2R 1982172 intron CG17684 - chr2R 6820664 3` UTR CR44442 - chr2R 11659156 intron Roc2 - chr2R_5_6820001 chr2R_6820001 RAL-819 862 chr2R 2110481 2110496 chr2R 2118064 2118079 17.6 9 7583 18.0 13.0 15.5 0.5 7598 chr2R 2110481 intron CG17684 - chr2R 2114280 intron CG17684 - chr2R 2118079 intron CG17684 - chr2R_9_2110001 chr2R_2110001 RAL-819 863 chr2R 2498961 2499013 chr2R 2508133 2508185 roo 36 9170 10.5 11.5 11.0 3.0 9224 chr2R 2498961 intron MFS17 - chr2R 2503573 intron MFS17 - chr2R 2508185 intron MFS17 - chr2R_36_2500001 chr2R_2500001 RAL-819 864 chr2R 2508282 2508337 chr2R 2508445 2508490 36 161 7.0 8.5 7.8 4.1 208 chr2R 2508282 intron MFS17 - chr2R 2508386 intron MFS17 - chr2R 2508490 intron MFS17 - chr2R_36_2505001 chr2R_2505001 RAL-819 865 chr2R 1373048 1373072 chr2R 2589326 2589345 Cr1a 9 1216274 32.0 53.0 42.5 0.2 1216297 chr2R 1373048 intron l(2)41Ab + chr2R 1981196 intron CG17684 - chr2R 2589345 intergenic not near genes chr2R_9_1980001 chr2R_1980001 RAL-819 866 chr2R 2875371 2875394 chr2R 2878900 2878934 HMS-Beagle 9 3538 56.5 56.0 56.2 0.2 3563 chr2R 2875371 intergenic not near genes chr2R 2877152 intergenic not near genes chr2R 2878934 intergenic not near genes chr2R_9_2875001 chr2R_2875001 RAL-819 867 chr2R 3107722 3107751 chr2R 3108431 3108460 7 709 10.5 13.0 11.8 0.5 738 chr2R 3107722 intron CG42596 + chr2R 3108091 intron CG42596 + chr2R 3108460 intron CG42596 + chr2R_7_3105001 chr2R_3105001 RAL-819 868 chr2R 3144068 3144109 chr2R 3393371 3393412 Doc 19 249302 42.0 10.0 26.0 0.7 249344 chr2R 3144068 intron CG42596 + chr2R 3268740 intergenic not near genes chr2R 3393412 intergenic not near genes chr2R_19_3265001 chr2R_3265001 RAL-819 869 chr2R 3259307 3259311 chr2R 3263289 3263299 4 3986 15.0 0.5 7.8 0.5 3992 chr2R 3259307 intergenic not near genes chr2R 3261303 intergenic not near genes chr2R 3263299 intergenic not near genes chr2R_4_3260001 chr2R_3260001 RAL-819 870 chr2R 3291793 3291958 chr2R 3914992 3915127 9 623190 40.0 63.0 51.5 0.2 623334 chr2R 3291793 intergenic not near genes chr2R 3603460 intergenic not near genes chr2R 3915127 intron uex - chr2R_9_3600001 chr2R_3600001 RAL-819 871 chr2R 3293724 3293755 chr2R 3293827 3293847 8 101 16.0 5.0 10.5 0.7 123 chr2R 3293724 intergenic not near genes chr2R 3293786 intergenic not near genes chr2R 3293847 intergenic not near genes chr2R_8_3290001 chr2R_3290001 RAL-819 872 chr2R 3532592 3532640 chr2R 3536060 3536108 Doc 26 3466 6.0 9.5 7.8 3.0 3516 chr2R 3532592 intergenic not near genes chr2R 3534350 intergenic not near genes chr2R 3536108 intergenic not near genes chr2R_26_3530001 chr2R_3530001 RAL-819 873 chr2R 3704841 3704851 chr2R 3704946 3704956 6 105 16.5 32.0 24.2 0.2 115 chr2R 3704841 intergenic not near genes chr2R 3704898 intergenic not near genes chr2R 3704956 intergenic not near genes chr2R_6_3700001 chr2R_3700001 RAL-819 874 chr2R 3291954 3292053 chr2R 3914992 3915130 4 623068 44.0 63.0 53.5 0.1 623176 chr2R 3291954 intergenic not near genes chr2R 3603542 intergenic not near genes chr2R 3915130 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-819 875 chr2R 4015298 4015349 chr2R 4015496 4015547 29 196 5.0 8.5 6.8 3.7 249 chr2R 4015298 intron Haspin + chr2R 4015422 intron Haspin + chr2R 4015547 intron Haspin + chr2R_29_4015001 chr2R_4015001 RAL-819 876 chr2R 4622933 4622984 chr2R 4624110 4624168 1360 39 1176 14.5 9.5 12.0 3.0 1235 chr2R 4622933 intergenic CR44101 - chr2R 4623550 intergenic not near genes chr2R 4624168 intergenic not near genes chr2R_39_4620001 chr2R_4620001 RAL-819 877 chr2R 4702471 4702506 chr2R 4702634 4702669 14 163 6.0 10.0 8.0 1.6 198 chr2R 4702471 intron Nipped-B - chr2R 4702570 intron Nipped-B - chr2R 4702669 intron Nipped-B - chr2R_14_4700001 chr2R_4700001 RAL-819 878 chr2R 4750320 4750377 chr2R 4751502 4751538 1360 46 1178 8.5 9.5 9.0 4.6 1218 chr2R 4750320 intron conu + chr2R 4750929 intron conu + chr2R 4751538 intron conu + chr2R_46_4750001 chr2R_4750001 RAL-819 879 chr2R 4821193 4821248 chr2R 4821304 4821359 28 110 9.0 5.5 7.2 3.4 166 chr2R 4821193 intron CG17528 - chr2R 4821276 intron CG17528 - chr2R 4821359 intron CG17528 - chr2R_28_4820001 chr2R_4820001 RAL-819 880 chr2R 4838851 4838902 chr2R 4840394 4840450 transib2 29 1545 12.5 12.5 12.5 2.1 1599 chr2R 4838851 intergenic not near genes chr2R 4839650 intergenic not near genes chr2R 4840450 intergenic not near genes chr2R_29_4835001 chr2R_4835001 RAL-819 881 chr2R 4940934 4940984 chr2R 4943409 4943423 20 2473 37.0 71.0 54.0 0.4 2489 chr2R 4940934 intron Ir41a + chr2R 4942178 intron Ir41a + chr2R 4943423 intron Ir41a + chr2R_20_4940001 chr2R_4940001 RAL-819 882 chr2R 5019259 5019310 chr2R 5019365 5019421 28 109 6.5 10.0 8.2 3.0 162 chr2R 5019259 intron Ir41a + chr2R 5019340 intron Ir41a + chr2R 5019421 intron Ir41a + chr2R_28_5015001 chr2R_5015001 RAL-819 883 chr2R 5038501 5038530 chr2R 5039323 5039337 15 817 19.0 8.5 13.8 1.0 836 chr2R 5038501 intergenic not near genes chr2R 5038919 intergenic not near genes chr2R 5039337 intergenic not near genes chr2R_15_5035001 chr2R_5035001 RAL-819 884 chr2R 5075200 5075238 chr2R 5075349 5075364 20 147 17.0 0.0 8.5 2.1 164 chr2R 5075200 intergenic not near genes chr2R 5075282 intergenic not near genes chr2R 5075364 intergenic not near genes chr2R_20_5075001 chr2R_5075001 RAL-819 885 chr2R 5075240 5075372 chr2R 5075756 5075813 39 462 0.0 11.0 5.5 6.0 573 chr2R 5075240 intergenic not near genes chr2R 5075526 intergenic not near genes chr2R 5075813 intergenic not near genes chr2R_39_5075001 chr2R_5075001 RAL-819 886 chr2R 5080766 5080818 chr2R 5080877 5080934 27 111 7.5 11.0 9.2 2.6 168 chr2R 5080766 intergenic not near genes chr2R 5080850 intergenic not near genes chr2R 5080934 intergenic not near genes chr2R_27_5080001 chr2R_5080001 RAL-819 887 chr2R 5125237 5125276 chr2R 5125568 5125619 14 341 5.0 3.5 4.2 2.7 382 chr2R 5125237 intron gus - chr2R 5125428 intron gus - chr2R 5125619 intron gus - chr2R_14_5125001 chr2R_5125001 RAL-819 888 chr2R 5144903 5144923 chr2R 5145009 5145015 10 104 7.0 8.0 7.5 1.2 112 chr2R 5144903 intron Atf6 + chr2R 5144959 intron Atf6 + chr2R 5145015 intron Atf6 + chr2R_10_5140001 chr2R_5140001 RAL-819 889 chr2R 5192236 5192237 chr2R 5192358 5192364 4 126 15.0 29.5 22.2 0.2 128 chr2R 5192236 intron Nipped-A - chr2R 5192300 intron Nipped-A - chr2R 5192364 intron Nipped-A - chr2R_4_5190001 chr2R_5190001 RAL-819 890 chr2R 5192694 5192905 chr2R 5192796 5193028 55 114 13.0 18.0 15.5 3.3 334 chr2R 5192694 intron Nipped-A - chr2R 5192861 intron Nipped-A - chr2R 5193028 intron Nipped-A - chr2R_55_5190001 chr2R_5190001 RAL-819 891 chr2R 5363465 5363511 chr2R 5363568 5363614 28 102 18.5 15.0 16.8 1.6 149 chr2R 5363465 5` UTR CR42646 + chr2R 5363540 intron CR42646 + chr2R 5363614 intron CR42646 + chr2R_28_5360001 chr2R_5360001 RAL-819 892 chr2R 5363514 5363519 chr2R 5363567 5363622 10 92 17.5 15.0 16.2 0.6 108 chr2R 5363514 intron CR42646 + chr2R 5363568 intron CR42646 + chr2R 5363622 intron CR42646 + chr2R_10_5360001 chr2R_5360001 RAL-819 893 chr2R 5417974 5417987 chr2R 5420631 5420644 Burdock 6 2657 14.5 10.5 12.5 0.4 2670 chr2R 5417974 intron laccase2 + chr2R 5419309 intron laccase2 + chr2R 5420644 intron laccase2 + chr2R_6_5415001 chr2R_5415001 RAL-819 894 chr2R 5417989 5418022 chr2R 5420626 5420674 Burdock 24 2656 9.5 9.0 9.2 2.4 2685 chr2R 5417989 intron laccase2 + chr2R 5419332 intron laccase2 + chr2R 5420674 intron laccase2 + chr2R_24_5415001 chr2R_5415001 RAL-819 895 chr2R 5472341 5472392 chr2R 5472461 5472501 39 116 17.0 16.0 16.5 2.2 160 chr2R 5472341 intron CG30440 - chr2R 5472421 intron CG30440 - chr2R 5472501 intron CG30440 - chr2R_39_5470001 chr2R_5470001 RAL-819 896 chr2R 5475428 5475458 chr2R 5475717 5475747 20 288 10.5 10.0 10.2 1.8 319 chr2R 5475428 intron CG30440 - chr2R 5475588 intron CG30440 - chr2R 5475747 intron CG30440 - chr2R_20_5475001 chr2R_5475001 RAL-819 897 chr2R 5475459 5475480 chr2R 5475716 5475769 18 285 6.0 9.5 7.8 2.0 310 chr2R 5475459 intron CG30440 - chr2R 5475614 intron CG30440 - chr2R 5475769 intron CG30440 - chr2R_18_5475001 chr2R_5475001 RAL-819 898 chr2R 5541912 5541967 chr2R 5542170 5542225 34 258 10.0 9.5 9.8 3.1 313 chr2R 5541912 intron CG30438 + chr2R 5542068 intron CG30438 + chr2R 5542225 intron CG30438 + chr2R_34_5540001 chr2R_5540001 RAL-819 899 chr2R 5543204 5543207 chr2R 5547313 5547316 invader1 4 4109 0.0 27.0 13.5 0.3 4112 chr2R 5543204 intron CG30438 + chr2R 5545260 intron CG30438 + chr2R 5547316 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-819 900 chr2R 5543211 5543216 chr2R 5547291 5547325 invader1 5 4101 0.0 17.5 8.8 0.5 4114 chr2R 5543211 intron CG30438 + chr2R 5545268 intron CG30438 + chr2R 5547325 intron CG30438 + chr2R_5_5545001 chr2R_5545001 RAL-819 901 chr2R 5543217 5543221 chr2R 5547289 5547315 invader1 4 4096 0.0 17.5 8.8 0.4 4098 chr2R 5543217 intron CG30438 + chr2R 5545266 intron CG30438 + chr2R 5547315 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-819 902 chr2R 5581403 5581422 chr2R 5627632 5627645 22 46231 7.0 46.0 26.5 0.8 46242 chr2R 5581403 intergenic not near genes chr2R 5604524 intron Fis1 - chr2R 5627645 intergenic not near genes chr2R_22_5600001 chr2R_5600001 RAL-819 903 chr2R 5807822 5807878 chr2R 5808034 5808090 43 209 16.5 12.5 14.5 2.8 268 chr2R 5807822 intron dpr12 + chr2R 5807956 intron dpr12 + chr2R 5808090 intron dpr12 + chr2R_43_5805001 chr2R_5805001 RAL-819 904 chr2R 5835909 5835967 chr2R 5836030 5836088 37 119 11.0 15.5 13.2 2.6 179 chr2R 5835909 intron dpr12 + chr2R 5835998 intron dpr12 + chr2R 5836088 intron dpr12 + chr2R_37_5835001 chr2R_5835001 RAL-819 905 chr2R 5869250 5869305 chr2R 5874351 5874406 flea 44 5099 12.0 11.0 11.5 3.5 5156 chr2R 5869250 intergenic not near genes chr2R 5871828 intergenic not near genes chr2R 5874406 intergenic not near genes chr2R_44_5870001 chr2R_5870001 RAL-819 906 chr2R 5885342 5885376 chr2R 5885496 5885530 17 153 6.5 8.0 7.2 2.1 188 chr2R 5885342 5` UTR CR44125 + chr2R 5885436 5` UTR CR44125 + chr2R 5885530 5` UTR CR44125 + chr2R_17_5885001 chr2R_5885001 RAL-819 907 chr2R 5902135 5902143 chr2R 5909719 5909727 17.6 4 7584 31.5 13.0 22.2 0.2 7592 chr2R 5902135 intron CG43366 + chr2R 5905931 intron CG43366 + chr2R 5909727 intron CG43366 + chr2R_4_5905001 chr2R_5905001 RAL-819 908 chr2R 5902144 5902188 chr2R 5909718 5909772 17.6 24 7582 12.5 13.0 12.8 1.7 7628 chr2R 5902144 intron CG43366 + chr2R 5905958 intron CG43366 + chr2R 5909772 intron CG43366 + chr2R_24_5905001 chr2R_5905001 RAL-819 909 chr2R 5982997 5983044 chr2R 5983167 5983214 39 169 12.0 15.5 13.8 2.6 217 chr2R 5982997 intron Src42A + chr2R 5983106 intron Src42A + chr2R 5983214 intron Src42A + chr2R_39_5980001 chr2R_5980001 RAL-819 910 chr2R 6033418 6033475 chr2R 6033527 6033585 32 107 11.0 12.0 11.5 2.6 167 chr2R 6033418 intron SCAP - chr2R 6033502 intron SCAP - chr2R 6033585 intron SCAP - chr2R_32_6030001 chr2R_6030001 RAL-819 911 chr2R 6089813 6089850 chr2R 6089917 6089954 20 102 9.5 7.5 8.5 2.1 141 chr2R 6089813 intergenic not near genes chr2R 6089884 intergenic not near genes chr2R 6089954 intergenic EcR - chr2R_20_6085001 chr2R_6085001 RAL-819 912 chr2R 6096697 6096750 chr2R 6101920 6101956 BS 43 5217 11.0 22.0 16.5 2.5 5259 chr2R 6096697 intron EcR - chr2R 6099326 intron EcR - chr2R 6101956 intron EcR - chr2R_43_6095001 chr2R_6095001 RAL-819 913 chr2R 6129299 6129356 chr2R 6129402 6129459 43 102 9.0 11.0 10.0 3.9 160 chr2R 6129299 intron EcR - chr2R 6129379 intron EcR - chr2R 6129459 intron EcR - chr2R_43_6125001 chr2R_6125001 RAL-819 914 chr2R 6168172 6168223 chr2R 6168279 6168330 39 106 13.0 13.0 13.0 2.8 158 chr2R 6168172 intron EcR - chr2R 6168251 intron EcR - chr2R 6168330 intron EcR - chr2R_39_6165001 chr2R_6165001 RAL-819 915 chr2R 6178095 6178143 chr2R 6178246 6178282 38 149 8.5 12.0 10.2 3.4 187 chr2R 6178095 intergenic not near genes chr2R 6178188 intergenic not near genes chr2R 6178282 intergenic not near genes chr2R_38_6175001 chr2R_6175001 RAL-819 916 chr2R 6194660 6194697 chr2R 6194768 6194787 26 106 24.5 21.0 22.8 1.1 127 chr2R 6194660 intron Ptr - chr2R 6194724 intron Ptr - chr2R 6194787 intron Ptr - chr2R_26_6190001 chr2R_6190001 RAL-819 917 chr2R 3998869 3998878 chr2R 6486819 6486841 9 2487952 64.0 41.0 52.5 0.2 2487972 chr2R 3998869 intergenic not near genes chr2R 5242855 intron Nipped-A - chr2R 6486841 intergenic not near genes chr2R_9_5240001 chr2R_5240001 RAL-819 918 chr2R 6494505 6494541 chr2R 6499292 6499328 F-element 16 4786 18.5 11.0 14.8 1.0 4823 chr2R 6494505 intergenic not near genes chr2R 6496916 intergenic not near genes chr2R 6499328 intergenic not near genes chr2R_16_6495001 chr2R_6495001 RAL-819 919 chr2R 6494542 6494554 chr2R 6499289 6499327 F-element 6 4778 14.0 10.0 12.0 0.5 4785 chr2R 6494542 intergenic not near genes chr2R 6496934 intergenic not near genes chr2R 6499327 intergenic not near genes chr2R_6_6495001 chr2R_6495001 RAL-819 920 chr2R 6539796 6539856 chr2R 6539944 6539996 63 146 6.0 12.0 9.0 6.3 200 chr2R 6539796 intron jing + chr2R 6539896 intron jing + chr2R 6539996 intron jing + chr2R_63_6535001 chr2R_6535001 RAL-819 921 chr2R 6541226 6541278 chr2R 6541355 6541407 30 120 9.5 11.5 10.5 2.6 181 chr2R 6541226 intron jing + chr2R 6541316 intron jing + chr2R 6541407 intron jing + chr2R_30_6540001 chr2R_6540001 RAL-819 922 chr2R 6579774 6579805 chr2R 6584886 6584917 flea 24 5110 13.0 10.0 11.5 1.9 5143 chr2R 6579774 intron jing + chr2R 6582346 intron jing + chr2R 6584917 intron jing + chr2R_24_6580001 chr2R_6580001 RAL-819 923 chr2R 6633171 6633231 chr2R 6633273 6633333 38 100 12.5 10.0 11.2 3.1 162 chr2R 6633171 intergenic Vha16-1 -,Trap1 - chr2R 6633252 intergenic Vha16-1 -,Trap1 - chr2R 6633333 intergenic Vha16-1 -,Trap1 - chr2R_38_6630001 chr2R_6630001 RAL-819 924 chr2R 6712566 6712577 chr2R 6712688 6712699 13 122 31.0 13.5 22.2 0.6 133 chr2R 6712566 intron,intron CG3409 -,CG45092 - chr2R 6712632 intron,intron CG3409 -,CG45092 - chr2R 6712699 intron,intron CG3409 -,CG45092 - chr2R_13_6710001 chr2R_6710001 RAL-819 925 chr2R 6712579 6712601 chr2R 6712687 6712723 21 120 21.0 13.5 17.2 1.2 144 chr2R 6712579 intron,intron CG3409 -,CG45092 - chr2R 6712651 intron,intron CG3409 -,CG45092 - chr2R 6712723 intron,intron CG3409 -,CG45092 - chr2R_21_6710001 chr2R_6710001 RAL-819 926 chr2R 6738824 6738877 chr2R 6738931 6738984 58 104 9.5 8.0 8.8 5.9 160 chr2R 6738824 intron l(2)01289 - chr2R 6738904 intron l(2)01289 - chr2R 6738984 intron l(2)01289 - chr2R_58_6735001 chr2R_6735001 RAL-819 927 chr2R 6861551 6861601 chr2R 6861654 6861704 43 101 12.0 7.0 9.5 4.1 153 chr2R 6861551 intergenic coro - chr2R 6861628 intergenic coro - chr2R 6861704 intergenic coro - chr2R_43_6860001 chr2R_6860001 RAL-819 928 chr2R 6870566 6870623 chr2R 6870694 6870751 45 127 10.0 9.0 9.5 4.3 185 chr2R 6870566 intron coro - chr2R 6870658 intron coro - chr2R 6870751 intron coro - chr2R_45_6870001 chr2R_6870001 RAL-819 929 chr2R 6876197 6876252 chr2R 6876304 6876359 47 105 9.5 7.0 8.2 5.1 162 chr2R 6876197 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876278 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876359 5` UTR,intron CR44169 +,Spn42Da - chr2R_47_6875001 chr2R_6875001 RAL-819 930 chr2R 6947359 6947360 chr2R 21479311 21479314 4 14531954 45.5 31.5 38.5 0.1 14531955 chr2R 6947359 intron,intron mim -,CheB42c - chr2R 14213336 intergenic not near genes chr2R 21479314 intron Sdc - chr2R_4_14210001 chr2R_14210001 RAL-819 931 chr2R 6952147 6952149 chr2R 6959752 6959753 opus 4 7604 30.0 12.5 21.2 0.2 7606 chr2R 6952147 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955950 intron,intron mim -,CheB42c - chr2R 6959753 intron,intron mim -,CheB42c - chr2R_4_6955001 chr2R_6955001 RAL-819 932 chr2R 6952151 6952156 chr2R 6959746 6959761 opus 5 7603 27.0 12.0 19.5 0.2 7610 chr2R 6952151 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955956 intron,intron mim -,CheB42c - chr2R 6959761 intron,intron mim -,CheB42c - chr2R_5_6955001 chr2R_6955001 RAL-819 933 chr2R 6952157 6952185 chr2R 6959744 6959790 opus 20 7602 18.0 11.0 14.5 1.3 7633 chr2R 6952157 intron,intron,exon mim -,CheB42c -,ppk25 + chr2R 6955974 intron,intron mim -,CheB42c - chr2R 6959790 intron,intron mim -,CheB42c - chr2R_20_6955001 chr2R_6955001 RAL-819 934 chr2R 7091185 7091240 chr2R 7091292 7091347 38 107 12.5 15.0 13.8 2.6 162 chr2R 7091185 intron esn + chr2R 7091266 intron esn + chr2R 7091347 intron esn + chr2R_38_7090001 chr2R_7090001 RAL-819 935 chr2R 7101602 7101646 chr2R 7101707 7101766 39 113 18.0 13.0 15.5 2.4 164 chr2R 7101602 intron esn + chr2R 7101684 intron esn + chr2R 7101766 intron esn + chr2R_39_7100001 chr2R_7100001 RAL-819 936 chr2R 7139945 7139952 chr2R 7141437 7141469 hopper2 8 1508 13.5 28.0 20.8 0.4 1524 chr2R 7139945 intergenic not near genes chr2R 7140707 intergenic not near genes chr2R 7141469 intergenic not near genes chr2R_8_7140001 chr2R_7140001 RAL-819 937 chr2R 7164084 7164128 chr2R 7164243 7164287 41 158 13.0 14.5 13.8 2.8 203 chr2R 7164084 intron pk + chr2R 7164186 intron pk + chr2R 7164287 intron pk + chr2R_41_7160001 chr2R_7160001 RAL-819 938 chr2R 7175479 7175480 chr2R 7175577 7175579 4 98 37.0 12.0 24.5 0.2 100 chr2R 7175479 intron pk + chr2R 7175529 intron pk + chr2R 7175579 intron pk + chr2R_4_7175001 chr2R_7175001 RAL-819 939 chr2R 7175481 7175492 chr2R 7175574 7175596 11 99 31.0 12.5 21.8 0.5 115 chr2R 7175481 intron pk + chr2R 7175538 intron pk + chr2R 7175596 intron pk + chr2R_11_7175001 chr2R_7175001 RAL-819 940 chr2R 7175494 7175531 chr2R 7175573 7175635 42 94 16.5 12.5 14.5 2.7 141 chr2R 7175494 intron pk + chr2R 7175564 intron pk + chr2R 7175635 intron pk + chr2R_42_7175001 chr2R_7175001 RAL-819 941 chr2R 7196549 7196554 chr2R 7201349 7201354 F-element 4 4800 42.0 15.0 28.5 0.1 4805 chr2R 7196549 intron pk + chr2R 7198952 intron pk + chr2R 7201354 intron pk + chr2R_4_7195001 chr2R_7195001 RAL-819 942 chr2R 7196555 7196568 chr2R 7201347 7201368 F-element 12 4799 34.5 15.0 24.8 0.5 4813 chr2R 7196555 intron pk + chr2R 7198962 intron pk + chr2R 7201368 intron pk + chr2R_12_7195001 chr2R_7195001 RAL-819 943 chr2R 7196571 7196596 chr2R 7201345 7201396 F-element 24 4798 18.0 15.0 16.5 1.4 4825 chr2R 7196571 intron pk + chr2R 7198984 intron pk + chr2R 7201396 intron pk + chr2R_24_7195001 chr2R_7195001 RAL-819 944 chr2R 7202541 7202581 chr2R 7202644 7202648 5 94 21.0 9.0 15.0 0.3 107 chr2R 7202541 intron pk + chr2R 7202594 intron pk + chr2R 7202648 intron pk + chr2R_5_7200001 chr2R_7200001 RAL-819 945 chr2R 7209845 7209874 chr2R 7217596 7217660 roo 14 7782 1.0 2.0 1.5 5.6 7815 chr2R 7209845 intron pk + chr2R 7213752 intron pk + chr2R 7217660 intron pk + chr2R_14_7210001 chr2R_7210001 RAL-819 946 chr2R 7235796 7235852 chr2R 7240913 7240919 jockey 45 5113 12.5 11.0 11.8 3.5 5123 chr2R 7235796 intergenic not near genes chr2R 7238358 intergenic not near genes chr2R 7240919 intergenic not near genes chr2R_45_7235001 chr2R_7235001 RAL-819 947 chr2R 7290176 7290196 chr2R 7290303 7290323 13 127 19.5 16.5 18.0 0.7 147 chr2R 7290176 intron pwn + chr2R 7290250 intron pwn + chr2R 7290323 intron pwn + chr2R_13_7290001 chr2R_7290001 RAL-819 948 chr2R 7290198 7290220 chr2R 7290290 7290347 25 123 9.0 12.0 10.5 2.2 149 chr2R 7290198 intron pwn + chr2R 7290272 intron pwn + chr2R 7290347 intron pwn + chr2R_25_7290001 chr2R_7290001 RAL-819 949 chr2R 7328105 7328152 chr2R 7328241 7328287 32 135 13.0 15.0 14.0 2.1 182 chr2R 7328105 intron,intron Dscam1 -,CR45129 + chr2R 7328196 intron,intron Dscam1 -,CR45129 + chr2R 7328287 intron,intron Dscam1 -,CR45129 + chr2R_32_7325001 chr2R_7325001 RAL-819 950 chr2R 7417878 7418169 chr2R 7417989 7418273 67 102 8.5 15.5 12.0 5.2 395 chr2R 7417878 intergenic not near genes chr2R 7418076 intergenic not near genes chr2R 7418273 intergenic not near genes chr2R_67_7415001 chr2R_7415001 RAL-819 951 chr2R 7434867 7434921 chr2R 7439193 7439204 Juan 37 4321 11.0 19.0 15.0 2.3 4337 chr2R 7434867 3` UTR so + chr2R 7437036 intergenic not near genes chr2R 7439204 intergenic not near genes chr2R_37_7435001 chr2R_7435001 RAL-819 952 chr2R 7450169 7450226 chr2R 7450284 7450333 51 114 8.5 8.5 8.5 5.4 164 chr2R 7450169 intron fa2h - chr2R 7450251 intron fa2h - chr2R 7450333 intron fa2h - chr2R_51_7450001 chr2R_7450001 RAL-819 953 chr2R 7547520 7547577 chr2R 7547623 7547680 35 101 10.5 11.0 10.8 3.0 160 chr2R 7547520 intron Corin + chr2R 7547600 intron Corin + chr2R 7547680 intron Corin + chr2R_35_7545001 chr2R_7545001 RAL-819 954 chr2R 7607049 7607077 chr2R 7607343 7607372 26 292 17.0 10.0 13.5 1.8 323 chr2R 7607049 intron CG1358 - chr2R 7607210 intron CG1358 - chr2R 7607372 intron CG1358 - chr2R_26_7605001 chr2R_7605001 RAL-819 955 chr2R 7608381 7608447 chr2R 7613609 7613674 I-element 31 5226 0.0 0.5 0.2 25.8 5293 chr2R 7608381 intron CG1358 - chr2R 7611028 intron CG1358 - chr2R 7613674 intron CG1358 - chr2R_31_7610001 chr2R_7610001 RAL-819 956 chr2R 7714059 7714115 chr2R 7714160 7714223 38 100 16.0 8.0 12.0 2.9 164 chr2R 7714059 exon CG1942 + chr2R 7714141 3` UTR CG1942 + chr2R 7714223 intergenic CG1942 + chr2R_38_7710001 chr2R_7710001 RAL-819 957 chr2R 7777555 7777603 chr2R 7777675 7777724 28 119 14.0 11.5 12.8 2.0 169 chr2R 7777555 intron,intron CG30497 -,CG45093 - chr2R 7777640 intron,intron CG30497 -,CG45093 - chr2R 7777724 intron,intron CG30497 -,CG45093 - chr2R_28_7775001 chr2R_7775001 RAL-819 958 chr2R 7815648 7815664 chr2R 7822142 7822158 Burdock 12 6494 18.5 14.0 16.2 0.7 6510 chr2R 7815648 intergenic CG1882 + chr2R 7818903 intergenic not near genes chr2R 7822158 3` UTR cathD - chr2R_12_7815001 chr2R_7815001 RAL-819 959 chr2R 7815666 7815699 chr2R 7822140 7822193 Burdock 24 6492 13.0 12.5 12.8 1.7 6527 chr2R 7815666 intergenic CG1882 + chr2R 7818930 intergenic not near genes chr2R 7822193 3` UTR cathD - chr2R_24_7815001 chr2R_7815001 RAL-819 960 chr2R 7862241 7862251 chr2R 7867351 7867362 flea 6 5110 41.0 13.5 27.2 0.2 5121 chr2R 7862241 intron Dgk - chr2R 7864802 intron Dgk - chr2R 7867362 intron Dgk - chr2R_6_7860001 chr2R_7860001 RAL-819 961 chr2R 7869166 7869211 chr2R 7873977 7874012 Doc 35 4809 16.5 16.0 16.2 2.0 4846 chr2R 7869166 intron Dgk - chr2R 7871589 intron Dgk - chr2R 7874012 intron Dgk - chr2R_35_7870001 chr2R_7870001 RAL-819 962 chr2R 7889289 7889335 chr2R 7891896 7891942 35 2603 72.5 52.5 62.5 0.6 2653 chr2R 7889289 intergenic not near genes chr2R 7890616 5` UTR CG30377 + chr2R 7891942 intron CG30377 + chr2R_35_7890001 chr2R_7890001 RAL-819 963 chr2R 7888383 7888410 chr2R 7892577 7892633 38 4205 102.5 96.5 99.5 0.4 4250 chr2R 7888383 intergenic not near genes chr2R 7890508 5` UTR CG30377 + chr2R 7892633 intron CG30377 + chr2R_38_7890001 chr2R_7890001 RAL-819 964 chr2R 7897137 7897153 chr2R 7897251 7897267 13 113 0.0 35.0 17.5 0.7 130 chr2R 7897137 intron CG30377 + chr2R 7897202 intron CG30377 + chr2R 7897267 intron CG30377 + chr2R_13_7895001 chr2R_7895001 RAL-819 965 chr2R 7916398 7916457 chr2R 7916508 7916567 48 108 15.0 9.5 12.2 3.6 169 chr2R 7916398 5` UTR CG12159 - chr2R 7916482 intergenic CG12159 -,Cul1 + chr2R 7916567 intergenic CG12159 -,Cul1 + chr2R_48_7915001 chr2R_7915001 RAL-819 966 chr2R 7942904 7942959 chr2R 7943186 7943241 31 280 13.0 11.0 12.0 2.4 337 chr2R 7942904 intron CG14764 - chr2R 7943072 intron CG14764 - chr2R 7943241 intron CG14764 - chr2R_31_7940001 chr2R_7940001 RAL-819 967 chr2R 7997414 7997456 chr2R 7997544 7997587 45 131 5.5 15.5 10.5 3.9 173 chr2R 7997414 exon Hey - chr2R 7997500 intron Hey - chr2R 7997587 intron Hey - chr2R_45_7995001 chr2R_7995001 RAL-819 968 chr2R 8015634 8015650 chr2R 8017675 8017676 13 2045 29.0 8.0 18.5 0.7 2042 chr2R 8015634 intergenic mir-4981 + chr2R 8016655 intergenic not near genes chr2R 8017676 intergenic not near genes chr2R_13_8015001 chr2R_8015001 RAL-819 969 chr2R 8015655 8015676 chr2R 8017672 8017724 22 2041 12.0 8.0 10.0 2.0 2069 chr2R 8015655 intergenic mir-4981 + chr2R 8016690 intergenic not near genes chr2R 8017724 intergenic not near genes chr2R_22_8015001 chr2R_8015001 RAL-819 970 chr2R 8157879 8157888 chr2R 8157992 8158001 6 112 24.0 21.0 22.5 0.3 122 chr2R 8157879 5` UTR CR44068 + chr2R 8157940 5` UTR CR44068 + chr2R 8158001 5` UTR CR44068 + chr2R_6_8155001 chr2R_8155001 RAL-819 971 chr2R 8157890 8157901 chr2R 8157988 8158014 12 111 17.5 20.5 19.0 0.6 124 chr2R 8157890 5` UTR CR44068 + chr2R 8157952 5` UTR CR44068 + chr2R 8158014 5` UTR CR44068 + chr2R_12_8155001 chr2R_8155001 RAL-819 972 chr2R 8157902 8157911 chr2R 8157987 8158024 13 107 13.5 19.5 16.5 0.7 122 chr2R 8157902 5` UTR CR44068 + chr2R 8157963 5` UTR CR44068 + chr2R 8158024 5` UTR CR44068 + chr2R_13_8155001 chr2R_8155001 RAL-819 973 chr2R 8160910 8160946 chr2R 8161025 8161061 1360 33 114 18.5 28.5 23.5 1.3 151 chr2R 8160910 exon CG8708 - chr2R 8160986 intron CG8708 - chr2R 8161061 intron CG8708 - chr2R_33_8160001 chr2R_8160001 RAL-819 974 chr2R 8203720 8203776 chr2R 8203836 8203893 35 116 12.0 0.5 6.2 4.9 173 chr2R 8203720 intron LRP1 + chr2R 8203806 intron LRP1 + chr2R 8203893 intron LRP1 + chr2R_35_8200001 chr2R_8200001 RAL-819 975 chr2R 8236011 8236056 chr2R 8236117 8236147 25 104 10.5 2.0 6.2 3.5 136 chr2R 8236011 intergenic not near genes chr2R 8236079 intergenic not near genes chr2R 8236147 intergenic not near genes chr2R_25_8235001 chr2R_8235001 RAL-819 976 chr2R 8249538 8249579 chr2R 8249645 8249681 26 106 21.5 8.0 14.8 1.6 143 chr2R 8249538 5` UTR CG44439 - chr2R 8249610 intergenic CG44439 - chr2R 8249681 intergenic CG44439 - chr2R_26_8245001 chr2R_8245001 RAL-819 977 chr2R 8249587 8249598 chr2R 8249643 8249705 5 97 15.5 7.5 11.5 0.4 118 chr2R 8249587 5` UTR CG44439 - chr2R 8249646 intergenic CG44439 - chr2R 8249705 intergenic CG44439 - chr2R_5_8245001 chr2R_8245001 RAL-819 978 chr2R 8277610 8277668 chr2R 8277730 8277788 49 112 12.5 14.0 13.2 3.5 178 chr2R 8277610 5` UTR CR44280 + chr2R 8277699 5` UTR CR44280 + chr2R 8277788 5` UTR CR44280 + chr2R_49_8275001 chr2R_8275001 RAL-819 979 chr2R 8330843 8330849 chr2R 8331348 8331350 roo 4 506 38.0 19.5 28.8 0.1 507 chr2R 8330843 intron pdm3 + chr2R 8331096 intron pdm3 + chr2R 8331350 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-819 980 chr2R 8330852 8330888 chr2R 8331346 8331399 roo 43 507 20.0 18.5 19.2 2.1 547 chr2R 8330852 intron pdm3 + chr2R 8331126 intron pdm3 + chr2R 8331399 intron pdm3 + chr2R_43_8330001 chr2R_8330001 RAL-819 981 chr2R 8379759 8379818 chr2R 8379880 8379939 64 119 11.0 8.0 9.5 6.1 180 chr2R 8379759 intron pdm3 + chr2R 8379849 intron pdm3 + chr2R 8379939 intron pdm3 + chr2R_64_8375001 chr2R_8375001 RAL-819 982 chr2R 8398187 8398240 chr2R 8402993 8403046 Doc 33 4804 12.5 14.0 13.2 2.3 4859 chr2R 8398187 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403046 intron CG2121 - chr2R_33_8400001 chr2R_8400001 RAL-819 983 chr2R 8416292 8416315 chr2R 8417141 8417148 I-element 13 845 10.0 17.5 13.8 0.9 856 chr2R 8416292 intergenic not near genes chr2R 8416720 intergenic CG43296 - chr2R 8417148 intergenic CG43296 - chr2R_13_8415001 chr2R_8415001 RAL-819 984 chr2R 8419340 8419395 chr2R 8419444 8419503 45 106 11.0 13.0 12.0 3.5 163 chr2R 8419340 intergenic not near genes chr2R 8419422 intergenic not near genes chr2R 8419503 intergenic not near genes chr2R_45_8415001 chr2R_8415001 RAL-819 985 chr2R 8483937 8483989 chr2R 8484038 8484090 32 96 17.5 11.0 14.2 2.1 153 chr2R 8483937 intron mtt - chr2R 8484014 intron mtt - chr2R 8484090 intron mtt - chr2R_32_8480001 chr2R_8480001 RAL-819 986 chr2R 8505091 8505103 chr2R 8505201 8505208 7 109 11.0 9.5 10.2 0.6 117 chr2R 8505091 intron mtt - chr2R 8505150 intron mtt - chr2R 8505208 intron mtt - chr2R_7_8505001 chr2R_8505001 RAL-819 987 chr2R 8524923 8524979 chr2R 8525086 8525143 52 158 14.0 7.0 10.5 4.5 220 chr2R 8524923 intron mtt - chr2R 8525033 intron mtt - chr2R 8525143 intron mtt - chr2R_52_8525001 chr2R_8525001 RAL-819 988 chr2R 8536172 8536231 chr2R 8536429 8536487 53 251 14.0 12.0 13.0 3.8 315 chr2R 8536172 intergenic not near genes chr2R 8536330 intergenic not near genes chr2R 8536487 intergenic not near genes chr2R_53_8535001 chr2R_8535001 RAL-819 989 chr2R 8557421 8557477 chr2R 8557913 8557949 41 489 16.0 14.5 15.2 2.5 528 chr2R 8557421 intergenic not near genes chr2R 8557685 intergenic not near genes chr2R 8557949 intergenic CR45308 - chr2R_41_8555001 chr2R_8555001 RAL-819 990 chr2R 8564241 8564297 chr2R 8565269 8565322 57 1026 62.0 75.5 68.8 0.8 1081 chr2R 8564241 3` UTR Cyp6a14 - chr2R 8564782 intron Cyp6a14 - chr2R 8565322 exon Cyp6a14 - chr2R_57_8560001 chr2R_8560001 RAL-819 991 chr2R 8563666 8563714 chr2R 8565943 8566002 60 2280 112.5 115.0 113.8 0.5 2336 chr2R 8563666 intergenic not near genes chr2R 8564834 exon Cyp6a14 - chr2R 8566002 5` UTR Cyp6a14 - chr2R_60_8560001 chr2R_8560001 RAL-819 992 chr2R 8566036 8566041 chr2R 8567007 8567012 1360 4 971 25.0 17.0 21.0 0.2 976 chr2R 8566036 5` UTR Cyp6a14 - chr2R 8566524 5` UTR Cyp6a14 - chr2R 8567012 5` UTR Cyp6a14 - chr2R_4_8565001 chr2R_8565001 RAL-819 993 chr2R 8566042 8566067 chr2R 8566984 8567023 1360 30 968 12.5 8.5 10.5 2.6 981 chr2R 8566042 5` UTR Cyp6a14 - chr2R 8566532 5` UTR Cyp6a14 - chr2R 8567023 5` UTR Cyp6a14 - chr2R_30_8565001 chr2R_8565001 RAL-819 994 chr2R 8612554 8612609 chr2R 8612656 8612667 50 100 8.5 14.5 11.5 4.0 113 chr2R 8612554 intron CG8642 - chr2R 8612610 intron CG8642 - chr2R 8612667 intron CG8642 - chr2R_50_8610001 chr2R_8610001 RAL-819 995 chr2R 8635909 8635933 chr2R 8636012 8636036 7 103 0.0 23.5 11.8 0.5 127 chr2R 8635909 intergenic not near genes chr2R 8635972 intergenic not near genes chr2R 8636036 intergenic not near genes chr2R_7_8635001 chr2R_8635001 RAL-819 996 chr2R 8722741 8722795 chr2R 8723003 8723056 pogo 52 262 12.0 8.0 10.0 4.7 315 chr2R 8722741 intron CG14767 - chr2R 8722898 intron CG14767 - chr2R 8723056 intron CG14767 - chr2R_52_8720001 chr2R_8720001 RAL-819 997 chr2R 8777899 8777945 chr2R 8784128 8784174 diver 19 6228 10.5 12.5 11.5 1.5 6275 chr2R 8777899 intergenic not near genes chr2R 8781036 intergenic not near genes chr2R 8784174 intergenic not near genes chr2R_19_8780001 chr2R_8780001 RAL-819 998 chr2R 8806299 8806359 chr2R 8806523 8806540 49 220 10.0 8.0 9.0 4.9 241 chr2R 8806299 intron sns + chr2R 8806420 intron sns + chr2R 8806540 intron sns + chr2R_49_8805001 chr2R_8805001 RAL-819 999 chr2R 8849209 8849262 chr2R 8849312 8849365 43 102 14.5 15.5 15.0 2.7 156 chr2R 8849209 intron sns + chr2R 8849287 intron sns + chr2R 8849365 intron sns + chr2R_43_8845001 chr2R_8845001 RAL-819 1000 chr2R 8967408 8967416 chr2R 8967580 8967588 8 171 0.0 21.5 10.8 0.7 180 chr2R 8967408 intron CG8216 - chr2R 8967498 intron CG8216 - chr2R 8967588 intron CG8216 - chr2R_8_8965001 chr2R_8965001 RAL-819 1001 chr2R 8967418 8967706 chr2R 8967575 8967848 47 161 13.5 19.0 16.2 2.7 430 chr2R 8967418 intron CG8216 - chr2R 8967633 intron CG8216 - chr2R 8967848 intron CG8216 - chr2R_47_8965001 chr2R_8965001 RAL-819 1002 chr2R 9047396 9047438 chr2R 9047516 9047558 37 118 13.0 17.5 15.2 2.3 162 chr2R 9047396 intron CG13743 - chr2R 9047477 intron CG13743 - chr2R 9047558 intron CG13743 - chr2R_37_9045001 chr2R_9045001 RAL-819 1003 chr2R 9055765 9055823 chr2R 9055870 9055914 24 102 24.0 7.0 15.5 1.5 149 chr2R 9055765 intron CG13743 - chr2R 9055840 intron CG13743 - chr2R 9055914 intron CG13743 - chr2R_24_9055001 chr2R_9055001 RAL-819 1004 chr2R 9063342 9063395 chr2R 9063639 9063692 42 295 11.5 8.5 10.0 3.8 350 chr2R 9063342 intron ana + chr2R 9063517 intron ana + chr2R 9063692 intron ana + chr2R_42_9060001 chr2R_9060001 RAL-819 1005 chr2R 9065888 9065947 chr2R 9065995 9066053 48 105 10.5 12.5 11.5 3.8 165 chr2R 9065888 intron ana + chr2R 9065970 intron ana + chr2R 9066053 intron ana + chr2R_48_9065001 chr2R_9065001 RAL-819 1006 chr2R 9076111 9076167 chr2R 9076212 9076268 32 100 13.0 13.5 13.2 2.3 157 chr2R 9076111 intron ana + chr2R 9076190 intron ana + chr2R 9076268 intron ana + chr2R_32_9075001 chr2R_9075001 RAL-819 1007 chr2R 9078458 9078496 chr2R 9078561 9078591 24 100 11.5 8.5 10.0 2.2 133 chr2R 9078458 intergenic CG8083 + chr2R 9078524 intergenic CG8083 + chr2R 9078591 intergenic CG8083 + chr2R_24_9075001 chr2R_9075001 RAL-819 1008 chr2R 9130329 9130382 chr2R 9130483 9130536 51 148 15.0 15.5 15.2 3.1 207 chr2R 9130329 intron CG18659 - chr2R 9130432 intron CG18659 - chr2R 9130536 intron CG18659 - chr2R_51_9130001 chr2R_9130001 RAL-819 1009 chr2R 9151276 9151334 chr2R 9157771 9157773 Burdock 69 6490 17.5 18.0 17.8 3.7 6497 chr2R 9151276 exon CG30345 + chr2R 9154524 intergenic not near genes chr2R 9157773 intergenic CG8008 - chr2R_69_9150001 chr2R_9150001 RAL-819 1010 chr2R 9161950 9162006 chr2R 9162060 9162087 37 108 13.0 15.0 14.0 2.5 137 chr2R 9161950 5` UTR CR44283 + chr2R 9162018 intergenic CG8046 -,CR44283 + chr2R 9162087 3` UTR CG8046 - chr2R_37_9160001 chr2R_9160001 RAL-819 1011 chr2R 9183106 9183160 chr2R 9183213 9183267 28 103 10.5 10.0 10.2 2.5 161 chr2R 9183106 intron ltd - chr2R 9183186 intron ltd - chr2R 9183267 intron ltd - chr2R_28_9180001 chr2R_9180001 RAL-819 1012 chr2R 9212671 9212722 chr2R 9213182 9213218 roo 37 504 22.5 19.0 20.8 1.7 547 chr2R 9212671 intergenic CR45309 + chr2R 9212944 intergenic CR45309 + chr2R 9213218 5` UTR CR45309 + chr2R_37_9210001 chr2R_9210001 RAL-819 1013 chr2R 9216221 9216279 chr2R 9216357 9216376 16 121 0.0 12.0 6.0 2.3 155 chr2R 9216221 intergenic not near genes chr2R 9216298 intergenic not near genes chr2R 9216376 intergenic not near genes chr2R_16_9215001 chr2R_9215001 RAL-819 1014 chr2R 9248282 9248288 chr2R 9248387 9248393 6 105 40.0 15.5 27.8 0.2 111 chr2R 9248282 intergenic not near genes chr2R 9248338 intergenic not near genes chr2R 9248393 intergenic not near genes chr2R_6_9245001 chr2R_9245001 RAL-819 1015 chr2R 9248290 9248336 chr2R 9248386 9248441 47 99 15.0 15.5 15.2 2.9 151 chr2R 9248290 intergenic not near genes chr2R 9248366 intergenic not near genes chr2R 9248441 intergenic not near genes chr2R_47_9245001 chr2R_9245001 RAL-819 1016 chr2R 9368110 9368154 chr2R 9368201 9368237 34 93 6.5 1.0 3.8 7.1 127 chr2R 9368110 intron CG13954 - chr2R 9368174 intron CG13954 - chr2R 9368237 intron CG13954 - chr2R_34_9365001 chr2R_9365001 RAL-819 1017 chr2R 9388630 9388685 chr2R 9388742 9388797 40 111 14.0 11.0 12.5 3.0 167 chr2R 9388630 5` UTR CG13954 - chr2R 9388714 5` UTR CG13954 - chr2R 9388797 5` UTR CG13954 - chr2R_40_9385001 chr2R_9385001 RAL-819 1018 chr2R 9406617 9406663 chr2R 9406723 9406725 27 95 13.0 0.5 6.8 3.5 108 chr2R 9406617 intron wun - chr2R 9406671 intron wun - chr2R 9406725 intron wun - chr2R_27_9405001 chr2R_9405001 RAL-819 1019 chr2R 9466648 9466687 chr2R 9466754 9466793 28 102 7.0 9.5 8.2 3.0 145 chr2R 9466648 intron Camta + chr2R 9466720 intron Camta + chr2R 9466793 intron Camta + chr2R_28_9465001 chr2R_9465001 RAL-819 1020 chr2R 9480054 9480098 chr2R 9490610 9490654 roo 28 10555 15.5 12.0 13.8 1.9 10600 chr2R 9480054 intergenic not near genes chr2R 9485354 intergenic not near genes chr2R 9490654 intergenic not near genes chr2R_28_9485001 chr2R_9485001 RAL-819 1021 chr2R 9605805 9605859 chr2R 9605937 9605991 37 131 8.0 12.0 10.0 3.4 186 chr2R 9605805 3` UTR CR44285 - chr2R 9605898 intergenic CR44285 -,GstT1 +,CG1902 + chr2R 9605991 5` UTR GstT1 + chr2R_37_9605001 chr2R_9605001 RAL-819 1022 chr2R 9618546 9618572 chr2R 9618799 9618807 14 251 4.0 0.0 2.0 4.7 261 chr2R 9618546 intron Mmp2 - chr2R 9618676 intron Mmp2 - chr2R 9618807 intron Mmp2 - chr2R_14_9615001 chr2R_9615001 RAL-819 1023 chr2R 9699381 9699440 chr2R 9699493 9699552 30 107 18.5 9.5 14.0 2.0 171 chr2R 9699381 intergenic not near genes chr2R 9699466 intergenic not near genes chr2R 9699552 intergenic not near genes chr2R_30_9695001 chr2R_9695001 RAL-819 1024 chr2R 9726606 9726640 chr2R 9734171 9734215 17.6 26 7575 20.0 13.5 16.8 1.5 7609 chr2R 9726606 intron sqa - chr2R 9730410 intron sqa - chr2R 9734215 intron sqa - chr2R_26_9730001 chr2R_9730001 RAL-819 1025 chr2R 9741782 9741788 chr2R 9741884 9741889 4 102 36.5 50.5 43.5 0.1 107 chr2R 9741782 intron sqa - chr2R 9741836 intron sqa - chr2R 9741889 intron sqa - chr2R_4_9740001 chr2R_9740001 RAL-819 1026 chr2R 9741791 9741802 chr2R 9741883 9741894 8 98 30.5 49.5 40.0 0.2 103 chr2R 9741791 intron sqa - chr2R 9741842 intron sqa - chr2R 9741894 intron sqa - chr2R_8_9740001 chr2R_9740001 RAL-819 1027 chr2R 9761284 9761299 chr2R 9761385 9761399 15 100 12.5 32.0 22.2 0.6 115 chr2R 9761284 intron trpl + chr2R 9761342 intron trpl + chr2R 9761399 intron trpl + chr2R_15_9760001 chr2R_9760001 RAL-819 1028 chr2R 9794522 9794577 chr2R 9794632 9794687 53 108 11.0 12.0 11.5 4.2 165 chr2R 9794522 intron,intron CG1688 -,CG1698 + chr2R 9794604 intron,intron CG1688 -,CG1698 + chr2R 9794687 intron,intron CG1688 -,CG1698 + chr2R_53_9790001 chr2R_9790001 RAL-819 1029 chr2R 9807403 9807463 chr2R 9807571 9807632 20 167 0.0 7.0 3.5 4.4 229 chr2R 9807403 intergenic not near genes chr2R 9807518 intergenic not near genes chr2R 9807632 intergenic not near genes chr2R_20_9805001 chr2R_9805001 RAL-819 1030 chr2R 9871019 9871071 chr2R 9871530 9871582 roo 41 509 10.0 16.5 13.2 2.9 563 chr2R 9871019 intron cbx - chr2R 9871300 intron cbx - chr2R 9871582 intron,5` UTR cbx -,CG18446 + chr2R_41_9870001 chr2R_9870001 RAL-819 1031 chr2R 9924786 9924839 chr2R 9924911 9924964 56 116 13.5 7.0 10.2 5.0 178 chr2R 9924786 intron Mef2 - chr2R 9924875 intron Mef2 - chr2R 9924964 intron Mef2 - chr2R_56_9920001 chr2R_9920001 RAL-819 1032 chr2R 9924840 9924843 chr2R 9924910 9924966 6 108 10.5 7.0 8.8 0.6 126 chr2R 9924840 intron Mef2 - chr2R 9924903 intron Mef2 - chr2R 9924966 intron Mef2 - chr2R_6_9920001 chr2R_9920001 RAL-819 1033 chr2R 7071632 7071642 chr2R 9941239 9941244 7 2869600 40.5 68.5 54.5 0.1 2869612 chr2R 7071632 3` UTR CG12831 - chr2R 8506438 intron mtt - chr2R 9941244 intron Mef2 - chr2R_7_8505001 chr2R_8505001 RAL-819 1034 chr2R 9945419 9945449 chr2R 9945640 9945670 BS 17 218 15.0 14.0 14.5 1.1 251 chr2R 9945419 intron Mef2 - chr2R 9945544 intron Mef2 - chr2R 9945670 intron Mef2 - chr2R_17_9945001 chr2R_9945001 RAL-819 1035 chr2R 9945451 9945474 chr2R 9945639 9945645 BS 10 210 7.5 13.5 10.5 0.9 194 chr2R 9945451 intron Mef2 - chr2R 9945548 intron Mef2 - chr2R 9945645 intron Mef2 - chr2R_10_9945001 chr2R_9945001 RAL-819 1036 chr2R 9998052 9998092 chr2R 9998171 9998211 12 119 10.0 12.0 11.0 1.0 159 chr2R 9998052 intron Pka-R2 - chr2R 9998132 intron Pka-R2 - chr2R 9998211 intron Pka-R2 - chr2R_12_9995001 chr2R_9995001 RAL-819 1037 chr2R 10005526 10005582 chr2R 10005659 10005715 55 132 10.0 8.5 9.2 5.4 189 chr2R 10005526 intron Pka-R2 - chr2R 10005620 intron Pka-R2 - chr2R 10005715 intron Pka-R2 - chr2R_55_10005001 chr2R_10005001 RAL-819 1038 chr2R 10005826 10005839 chr2R 10007016 10007029 1360 11 1188 31.5 16.5 24.0 0.4 1203 chr2R 10005826 intron Pka-R2 - chr2R 10006428 intron Pka-R2 - chr2R 10007029 intron Pka-R2 - chr2R_11_10005001 chr2R_10005001 RAL-819 1039 chr2R 10005840 10005867 chr2R 10007014 10007040 1360 32 1181 22.0 16.5 19.2 1.6 1200 chr2R 10005840 intron Pka-R2 - chr2R 10006440 intron Pka-R2 - chr2R 10007040 intron Pka-R2 - chr2R_32_10005001 chr2R_10005001 RAL-819 1040 chr2R 10005868 10005879 chr2R 10007012 10007046 1360 10 1170 17.5 15.5 16.5 0.6 1178 chr2R 10005868 intron Pka-R2 - chr2R 10006457 intron Pka-R2 - chr2R 10007046 intron Pka-R2 - chr2R_10_10005001 chr2R_10005001 RAL-819 1041 chr2R 10008551 10008600 chr2R 10008643 10008708 23 94 2.5 0.0 1.2 10.5 157 chr2R 10008551 intron Pka-R2 - chr2R 10008630 intron Pka-R2 - chr2R 10008708 intron Pka-R2 - chr2R_23_10005001 chr2R_10005001 RAL-819 1042 chr2R 10040690 10040738 chr2R 10040795 10040843 45 104 13.5 9.5 11.5 3.6 153 chr2R 10040690 intron oys - chr2R 10040766 intron oys - chr2R 10040843 intron oys - chr2R_45_10040001 chr2R_10040001 RAL-819 1043 chr2R 10047797 10047800 chr2R 10047905 10047908 4 108 28.5 20.5 24.5 0.2 111 chr2R 10047797 intron oys - chr2R 10047852 intron oys - chr2R 10047908 intron oys - chr2R_4_10045001 chr2R_10045001 RAL-819 1044 chr2R 10047801 10047837 chr2R 10047896 10047902 23 105 15.5 16.0 15.8 1.4 101 chr2R 10047801 intron oys - chr2R 10047852 intron oys - chr2R 10047902 intron oys - chr2R_23_10045001 chr2R_10045001 RAL-819 1045 chr2R 10132166 10132169 chr2R 10132271 10132274 6 104 25.0 15.5 20.2 0.3 108 chr2R 10132166 intron gem + chr2R 10132220 intron gem + chr2R 10132274 intron gem + chr2R_6_10130001 chr2R_10130001 RAL-819 1046 chr2R 10132170 10132217 chr2R 10132269 10132322 33 103 7.0 13.5 10.2 2.9 152 chr2R 10132170 intron gem + chr2R 10132246 intron gem + chr2R 10132322 exon gem + chr2R_33_10130001 chr2R_10130001 RAL-819 1047 chr2R 10168332 10168360 chr2R 10168435 10168461 8 102 14.0 28.5 21.2 0.4 129 chr2R 10168332 intron KCNQ - chr2R 10168396 intron KCNQ - chr2R 10168461 intron KCNQ - chr2R_8_10165001 chr2R_10165001 RAL-819 1048 chr2R 10171085 10171138 chr2R 10171194 10171240 32 108 4.5 12.5 8.5 3.4 155 chr2R 10171085 intron KCNQ - chr2R 10171162 intron KCNQ - chr2R 10171240 intron KCNQ - chr2R_32_10170001 chr2R_10170001 RAL-819 1049 chr2R 10176859 10176913 chr2R 10186045 10186105 roo 46 9189 13.0 8.5 10.8 3.9 9246 chr2R 10176859 intron KCNQ - chr2R 10181482 intron KCNQ - chr2R 10186105 intron KCNQ - chr2R_46_10180001 chr2R_10180001 RAL-819 1050 chr2R 10203616 10203657 chr2R 10203726 10203767 30 109 9.0 0.0 4.5 5.5 151 chr2R 10203616 intergenic not near genes chr2R 10203692 intergenic not near genes chr2R 10203767 intergenic not near genes chr2R_30_10200001 chr2R_10200001 RAL-819 1051 chr2R 10221202 10221209 chr2R 10221333 10221341 7 132 16.5 14.0 15.2 0.4 139 chr2R 10221202 intron,intron CG12912 -,Hr46 - chr2R 10221272 intron,intron CG12912 -,Hr46 - chr2R 10221341 intron,intron CG12912 -,Hr46 - chr2R_7_10220001 chr2R_10220001 RAL-819 1052 chr2R 10221210 10221229 chr2R 10221332 10221361 10 129 9.5 13.0 11.2 0.8 151 chr2R 10221210 intron,intron CG12912 -,Hr46 - chr2R 10221286 intron,intron CG12912 -,Hr46 - chr2R 10221361 intron,intron CG12912 -,Hr46 - chr2R_10_10220001 chr2R_10220001 RAL-819 1053 chr2R 10234957 10234971 chr2R 10235071 10235085 12 114 28.5 0.0 14.2 0.8 128 chr2R 10234957 intron Hr46 - chr2R 10235021 intron Hr46 - chr2R 10235085 intron Hr46 - chr2R_12_10235001 chr2R_10235001 RAL-819 1054 chr2R 10257134 10257192 chr2R 10257250 10257308 23 116 8.5 2.0 5.2 3.7 174 chr2R 10257134 intron CG12911 + chr2R 10257221 intron CG12911 + chr2R 10257308 intron CG12911 + chr2R_23_10255001 chr2R_10255001 RAL-819 1055 chr2R 10266475 10266514 chr2R 10266591 10266599 15 111 33.0 13.0 23.0 0.6 124 chr2R 10266475 intron CG12910 + chr2R 10266537 intron CG12910 + chr2R 10266599 intron CG12910 + chr2R_15_10265001 chr2R_10265001 RAL-819 1056 chr2R 10266515 10266529 chr2R 10266587 10266602 8 98 21.0 11.5 16.2 0.5 87 chr2R 10266515 intron CG12910 + chr2R 10266558 intron CG12910 + chr2R 10266602 intron CG12910 + chr2R_8_10265001 chr2R_10265001 RAL-819 1057 chr2R 10274797 10274822 chr2R 10274898 10274923 23 99 20.0 0.0 10.0 2.1 126 chr2R 10274797 intron CAP + chr2R 10274860 intron CAP + chr2R 10274923 intron CAP + chr2R_23_10270001 chr2R_10270001 RAL-819 1058 chr2R 10300624 10300636 chr2R 10300745 10300757 9 119 2.5 3.0 2.8 2.4 133 chr2R 10300624 intron CAP + chr2R 10300690 intron CAP + chr2R 10300757 intron CAP + chr2R_9_10300001 chr2R_10300001 RAL-819 1059 chr2R 10300637 10300675 chr2R 10300742 10300760 19 117 1.5 3.0 2.2 5.9 123 chr2R 10300637 intron CAP + chr2R 10300698 intron CAP + chr2R 10300760 intron CAP + chr2R_19_10300001 chr2R_10300001 RAL-819 1060 chr2R 10303395 10303448 chr2R 10303681 10303734 42 283 13.0 15.0 14.0 2.8 339 chr2R 10303395 intron CAP + chr2R 10303564 intron CAP + chr2R 10303734 intron CAP + chr2R_42_10300001 chr2R_10300001 RAL-819 1061 chr2R 10313291 10313348 chr2R 10313404 10313461 45 112 6.0 11.5 8.8 4.6 170 chr2R 10313291 intergenic not near genes chr2R 10313376 intergenic not near genes chr2R 10313461 intergenic Ndg + chr2R_45_10310001 chr2R_10310001 RAL-819 1062 chr2R 10318495 10318534 chr2R 10318600 10318606 26 104 1.5 8.0 4.8 4.5 111 chr2R 10318495 intron Ndg + chr2R 10318550 intron Ndg + chr2R 10318606 intron Ndg + chr2R_26_10315001 chr2R_10315001 RAL-819 1063 chr2R 10318538 10318540 chr2R 12895336 12895338 4 2576798 0.0 57.5 28.8 0.1 2576800 chr2R 10318538 intron Ndg + chr2R 11606938 intron tou - chr2R 12895338 intron vg + chr2R_4_11605001 chr2R_11605001 RAL-819 1064 chr2R 10319691 10319692 chr2R 10319809 10319815 4 120 6.5 14.5 10.5 0.3 124 chr2R 10319691 intron Ndg + chr2R 10319753 intron Ndg + chr2R 10319815 intron Ndg + chr2R_4_10315001 chr2R_10315001 RAL-819 1065 chr2R 10352646 10352705 chr2R 10352748 10352807 43 100 13.0 14.0 13.5 3.0 161 chr2R 10352646 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352807 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_43_10350001 chr2R_10350001 RAL-819 1066 chr2R 10376708 10376908 chr2R 10376856 10377056 15 147 0.0 0.0 0.0 15.0 348 chr2R 10376708 intron CG42732 - chr2R 10376882 intron CG42732 - chr2R 10377056 intron CG42732 - chr2R_15_10375001 chr2R_10375001 RAL-819 1067 chr2R 10396719 10396777 chr2R 10397156 10397214 34 438 86.0 123.5 104.8 0.3 495 chr2R 10396719 intron CG42732 - chr2R 10396966 intron CG42732 - chr2R 10397214 intron CG42732 - chr2R_34_10395001 chr2R_10395001 RAL-819 1068 chr2R 10409043 10409084 chr2R 10409148 10409189 20 104 0.0 14.0 7.0 2.5 146 chr2R 10409043 intron CG42732 - chr2R 10409116 intron CG42732 - chr2R 10409189 intron,exon CG42732 -,CG33477 - chr2R_20_10405001 chr2R_10405001 RAL-819 1069 chr2R 10411780 10411792 chr2R 10411887 10411899 9 107 22.0 9.5 15.8 0.5 119 chr2R 10411780 intron CG42732 - chr2R 10411840 intron CG42732 - chr2R 10411899 intron CG42732 - chr2R_9_10410001 chr2R_10410001 RAL-819 1070 chr2R 10411793 10411837 chr2R 10411885 10411944 23 99 8.5 8.5 8.5 2.4 151 chr2R 10411793 intron CG42732 - chr2R 10411868 intron CG42732 - chr2R 10411944 intron CG42732 - chr2R_23_10410001 chr2R_10410001 RAL-819 1071 chr2R 10418287 10418291 chr2R 10424073 10424077 5 5786 55.5 31.0 43.2 0.1 5790 chr2R 10418287 intergenic Prx2540-2 + chr2R 10421182 5` UTR CG11825 - chr2R 10424077 intergenic Prx2540-1 +,CG11825 - chr2R_5_10420001 chr2R_10420001 RAL-819 1072 chr2R 10454076 10454079 chr2R 10454178 10454181 5 102 41.5 15.0 28.2 0.2 105 chr2R 10454076 intron,intron Galphao +,Cyp49a1 - chr2R 10454128 intron,intron Galphao +,Cyp49a1 - chr2R 10454181 intron,intron Galphao +,Cyp49a1 - chr2R_5_10450001 chr2R_10450001 RAL-819 1073 chr2R 10454081 10454085 chr2R 10454177 10454186 4 100 39.0 15.0 27.0 0.1 105 chr2R 10454081 intron,intron Galphao +,Cyp49a1 - chr2R 10454134 intron,intron Galphao +,Cyp49a1 - chr2R 10454186 intron,intron Galphao +,Cyp49a1 - chr2R_4_10450001 chr2R_10450001 RAL-819 1074 chr2R 10454086 10454119 chr2R 10454175 10454203 31 96 16.5 14.0 15.2 1.9 117 chr2R 10454086 intron,intron Galphao +,Cyp49a1 - chr2R 10454144 intron,intron Galphao +,Cyp49a1 - chr2R 10454203 intron,intron Galphao +,Cyp49a1 - chr2R_31_10450001 chr2R_10450001 RAL-819 1075 chr2R 10454120 10454129 chr2R 10454172 10454231 13 87 16.5 14.5 15.5 0.8 111 chr2R 10454120 intron,intron Galphao +,Cyp49a1 - chr2R 10454176 intron,intron Galphao +,Cyp49a1 - chr2R 10454231 intron,intron Galphao +,Cyp49a1 - chr2R_13_10450001 chr2R_10450001 RAL-819 1076 chr2R 10468996 10469055 chr2R 10469147 10469205 58 149 13.0 14.0 13.5 4.0 209 chr2R 10468996 intron CG11777 + chr2R 10469100 intron CG11777 + chr2R 10469205 exon CG11777 + chr2R_58_10465001 chr2R_10465001 RAL-819 1077 chr2R 10546545 10546591 chr2R 10546652 10546707 46 113 12.5 13.0 12.8 3.3 162 chr2R 10546545 intergenic not near genes chr2R 10546626 intergenic not near genes chr2R 10546707 intergenic not near genes chr2R_46_10545001 chr2R_10545001 RAL-819 1078 chr2R 10548120 10548124 chr2R 10548208 10548210 4 94 16.0 32.0 24.0 0.2 90 chr2R 10548120 intergenic not near genes chr2R 10548165 intergenic not near genes chr2R 10548210 intergenic not near genes chr2R_4_10545001 chr2R_10545001 RAL-819 1079 chr2R 10548130 10548133 chr2R 10548206 10548226 6 91 13.0 30.5 21.8 0.3 96 chr2R 10548130 intergenic not near genes chr2R 10548178 intergenic not near genes chr2R 10548226 intergenic not near genes chr2R_6_10545001 chr2R_10545001 RAL-819 1080 chr2R 10563227 10563526 chr2R 10563345 10563631 28 121 37.5 15.0 26.2 1.0 404 chr2R 10563227 intron psq + chr2R 10563429 intron psq + chr2R 10563631 intron psq + chr2R_28_10560001 chr2R_10560001 RAL-819 1081 chr2R 10563530 10563550 chr2R 10563635 10563655 11 103 29.0 24.0 26.5 0.4 125 chr2R 10563530 intron psq + chr2R 10563592 intron psq + chr2R 10563655 intron psq + chr2R_11_10560001 chr2R_10560001 RAL-819 1082 chr2R 10563555 10563582 chr2R 10563630 10563647 16 80 11.5 22.5 17.0 0.9 92 chr2R 10563555 intron psq + chr2R 10563601 intron psq + chr2R 10563647 intron psq + chr2R_16_10560001 chr2R_10560001 RAL-819 1083 chr2R 10563902 10563922 chr2R 10564118 10564138 13 216 0.0 17.0 8.5 1.4 236 chr2R 10563902 intron psq + chr2R 10564020 intron psq + chr2R 10564138 intron psq + chr2R_13_10560001 chr2R_10560001 RAL-819 1084 chr2R 10574599 10574642 chr2R 10574706 10574749 11 107 19.0 25.5 22.2 0.5 150 chr2R 10574599 intron psq + chr2R 10574674 intron psq + chr2R 10574749 intron psq + chr2R_11_10570001 chr2R_10570001 RAL-819 1085 chr2R 10585573 10585589 chr2R 10594152 10594182 Tirant 14 8600 10.5 12.0 11.2 1.1 8609 chr2R 10585573 intron psq + chr2R 10589878 intron psq + chr2R 10594182 intron psq + chr2R_14_10585001 chr2R_10585001 RAL-819 1086 chr2R 10622331 10622343 chr2R 10637121 10637128 mdg1 7 14788 29.5 8.0 18.8 0.4 14797 chr2R 10622331 intron CG11883 + chr2R 10629730 intron CG11883 + chr2R 10637128 intron CG11883 + chr2R_7_10625001 chr2R_10625001 RAL-819 1087 chr2R 10622344 10622363 chr2R 10637119 10637122 mdg1 12 14786 26.0 8.0 17.0 0.7 14778 chr2R 10622344 intron CG11883 + chr2R 10629733 intron CG11883 + chr2R 10637122 intron CG11883 + chr2R_12_10625001 chr2R_10625001 RAL-819 1088 chr2R 10644033 10644085 chr2R 10644136 10644188 45 101 11.0 0.5 5.8 6.6 155 chr2R 10644033 intron Git - chr2R 10644110 intron Git - chr2R 10644188 intron Git - chr2R_45_10640001 chr2R_10640001 RAL-819 1089 chr2R 10771802 10771858 chr2R 10772009 10772063 7 199 10.0 13.5 11.8 0.5 261 chr2R 10771802 intron CG33144 - chr2R 10771932 intron CG33144 - chr2R 10772063 intron CG33144 - chr2R_7_10770001 chr2R_10770001 RAL-819 1090 chr2R 10781377 10781400 chr2R 10781762 10781780 4 384 24.0 9.0 16.5 0.2 403 chr2R 10781377 intron CG33144 - chr2R 10781578 intron CG33144 - chr2R 10781780 intron CG33144 - chr2R_4_10780001 chr2R_10780001 RAL-819 1091 chr2R 10781401 10781404 chr2R 10781761 10781782 7 371 21.0 9.0 15.0 0.4 381 chr2R 10781401 intron CG33144 - chr2R 10781592 intron CG33144 - chr2R 10781782 intron CG33144 - chr2R_7_10780001 chr2R_10780001 RAL-819 1092 chr2R 10781405 10781426 chr2R 10781758 10781810 10 370 11.0 8.0 9.5 1.0 405 chr2R 10781405 intron CG33144 - chr2R 10781608 intron CG33144 - chr2R 10781810 intron CG33144 - chr2R_10_10780001 chr2R_10780001 RAL-819 1093 chr2R 10790119 10790175 chr2R 10790232 10790288 43 111 7.0 11.5 9.2 4.2 169 chr2R 10790119 intron CG33144 - chr2R 10790204 intron CG33144 - chr2R 10790288 intron CG33144 - chr2R_43_10790001 chr2R_10790001 RAL-819 1094 chr2R 10860579 10860589 chr2R 10860680 10860690 13 101 0.0 1.0 0.5 8.7 111 chr2R 10860579 intron CG30015 - chr2R 10860634 intron CG30015 - chr2R 10860690 intron CG30015 - chr2R_13_10860001 chr2R_10860001 RAL-819 1095 chr2R 10913579 10913592 chr2R 10914212 10914216 12 630 24.5 9.5 17.0 0.7 637 chr2R 10913579 intergenic not near genes chr2R 10913898 intergenic not near genes chr2R 10914216 intergenic not near genes chr2R_12_10910001 chr2R_10910001 RAL-819 1096 chr2R 10937794 10937832 chr2R 10937942 10937995 25 160 0.5 21.0 10.8 2.1 201 chr2R 10937794 intergenic not near genes chr2R 10937894 intergenic not near genes chr2R 10937995 intergenic Spn47C - chr2R_25_10935001 chr2R_10935001 RAL-819 1097 chr2R 10947067 10947121 chr2R 10947179 10947181 15 106 11.5 0.0 5.8 2.2 114 chr2R 10947067 5` UTR CR45228 + chr2R 10947124 intergenic CR45228 + chr2R 10947181 intergenic CR45228 + chr2R_15_10945001 chr2R_10945001 RAL-819 1098 chr2R 10948012 10948014 chr2R 10955583 10955590 17.6 4 7575 7.5 15.5 11.5 0.3 7578 chr2R 10948012 intergenic not near genes chr2R 10951801 intergenic not near genes chr2R 10955590 intergenic not near genes chr2R_4_10950001 chr2R_10950001 RAL-819 1099 chr2R 10948015 10948037 chr2R 10955582 10955591 17.6 21 7570 6.0 15.0 10.5 1.8 7576 chr2R 10948015 intergenic not near genes chr2R 10951803 intergenic not near genes chr2R 10955591 intergenic not near genes chr2R_21_10950001 chr2R_10950001 RAL-819 1100 chr2R 10948038 10948062 chr2R 10955581 10955628 17.6 14 7565 5.0 12.5 8.8 1.4 7590 chr2R 10948038 intergenic not near genes chr2R 10951833 intergenic not near genes chr2R 10955628 intergenic not near genes chr2R_14_10950001 chr2R_10950001 RAL-819 1101 chr2R 10959065 10959107 chr2R 10959169 10959211 25 103 6.0 8.0 7.0 3.1 146 chr2R 10959065 intergenic not near genes chr2R 10959138 intergenic not near genes chr2R 10959211 intergenic not near genes chr2R_25_10955001 chr2R_10955001 RAL-819 1102 chr2R 10979651 10979686 chr2R 10980134 10980179 297 21 492 10.0 20.0 15.0 1.3 528 chr2R 10979651 intergenic not near genes chr2R 10979915 intergenic not near genes chr2R 10980179 intergenic not near genes chr2R_21_10975001 chr2R_10975001 RAL-819 1103 chr2R 11009797 11009848 chr2R 11018991 11019003 roo 28 9188 11.5 21.0 16.2 1.6 9206 chr2R 11009797 intron luna - chr2R 11014400 intron luna - chr2R 11019003 intron luna - chr2R_28_11010001 chr2R_11010001 RAL-819 1104 chr2R 11019865 11019873 chr2R 11024948 11024964 jockey 8 5088 31.5 14.5 23.0 0.3 5099 chr2R 11019865 intron luna - chr2R 11022414 intron luna - chr2R 11024964 intron luna - chr2R_8_11020001 chr2R_11020001 RAL-819 1105 chr2R 11019877 11019894 chr2R 11024947 11024985 jockey 8 5082 17.0 14.5 15.8 0.5 5108 chr2R 11019877 intron luna - chr2R 11022431 intron luna - chr2R 11024985 intron luna - chr2R_8_11020001 chr2R_11020001 RAL-819 1106 chr2R 11019895 11019911 chr2R 11024946 11024971 jockey 15 5072 11.0 14.5 12.8 1.1 5076 chr2R 11019895 intron luna - chr2R 11022433 intron luna - chr2R 11024971 intron luna - chr2R_15_11020001 chr2R_11020001 RAL-819 1107 chr2R 11032622 11032666 chr2R 11032741 11032785 40 117 17.5 17.5 17.5 2.2 163 chr2R 11032622 intron luna - chr2R 11032704 intron luna - chr2R 11032785 intron luna - chr2R_40_11030001 chr2R_11030001 RAL-819 1108 chr2R 11034259 11034317 chr2R 11034492 11034540 53 228 11.0 11.5 11.2 4.3 281 chr2R 11034259 intron luna - chr2R 11034400 intron luna - chr2R 11034540 intron luna - chr2R_53_11030001 chr2R_11030001 RAL-819 1109 chr2R 11055927 11055939 chr2R 11056257 11056279 7 342 16.5 18.5 17.5 0.4 352 chr2R 11055927 intron luna - chr2R 11056103 intron luna - chr2R 11056279 intron luna - chr2R_7_11055001 chr2R_11055001 RAL-819 1110 chr2R 11110398 11110422 chr2R 11110499 11110523 13 101 0.0 16.5 8.2 1.4 125 chr2R 11110398 intron luna - chr2R 11110460 intron luna - chr2R 11110523 intron luna - chr2R_13_11110001 chr2R_11110001 RAL-819 1111 chr2R 11179250 11179283 chr2R 11179361 11179394 30 108 18.0 32.5 25.2 1.1 144 chr2R 11179250 intron shn + chr2R 11179322 intron shn + chr2R 11179394 intron shn + chr2R_30_11175001 chr2R_11175001 RAL-819 1112 chr2R 11194774 11194779 chr2R 11194907 11194912 8 133 38.5 30.5 34.5 0.2 138 chr2R 11194774 intron shn + chr2R 11194843 intron shn + chr2R 11194912 intron shn + chr2R_8_11190001 chr2R_11190001 RAL-819 1113 chr2R 11194780 11194796 chr2R 11194906 11194929 16 132 31.0 30.0 30.5 0.5 149 chr2R 11194780 intron shn + chr2R 11194854 intron shn + chr2R 11194929 intron shn + chr2R_16_11190001 chr2R_11190001 RAL-819 1114 chr2R 11207796 11207819 chr2R 11208014 11208021 BS 14 216 30.0 22.5 26.2 0.5 225 chr2R 11207796 intron shn + chr2R 11207908 intron shn + chr2R 11208021 intron shn + chr2R_14_11205001 chr2R_11205001 RAL-819 1115 chr2R 11207821 11207846 chr2R 11208013 11208053 BS 18 214 20.0 21.0 20.5 0.8 232 chr2R 11207821 intron shn + chr2R 11207937 intron shn + chr2R 11208053 intron shn + chr2R_18_11205001 chr2R_11205001 RAL-819 1116 chr2R 11218891 11218898 chr2R 11219047 11219054 7 156 22.5 14.0 18.2 0.4 163 chr2R 11218891 intron CG9084 - chr2R 11218972 intron CG9084 - chr2R 11219054 intron CG9084 - chr2R_7_11215001 chr2R_11215001 RAL-819 1117 chr2R 11218899 11218938 chr2R 11219045 11219094 43 153 7.5 11.0 9.2 4.2 195 chr2R 11218899 intron CG9084 - chr2R 11218996 intron CG9084 - chr2R 11219094 intron CG9084 - chr2R_43_11215001 chr2R_11215001 RAL-819 1118 chr2R 11250072 11250106 chr2R 11250255 11250274 29 181 18.5 10.5 14.5 1.9 202 chr2R 11250072 intergenic CG43112 +,Or47a + chr2R 11250173 intergenic Or47a +,CG43112 + chr2R 11250274 intergenic Or47a +,CG43112 + chr2R_29_11250001 chr2R_11250001 RAL-819 1119 chr2R 11276779 11276818 chr2R 11276972 11277011 39 191 9.5 8.0 8.8 4.0 232 chr2R 11276779 intergenic not near genes chr2R 11276895 intergenic not near genes chr2R 11277011 intergenic not near genes chr2R_39_11275001 chr2R_11275001 RAL-819 1120 chr2R 11297615 11297646 chr2R 11301939 11301952 flea 35 4338 11.5 14.0 12.8 2.5 4337 chr2R 11297615 intergenic CG42336 - chr2R 11299784 intergenic not near genes chr2R 11301952 5` UTR CG7741 + chr2R_35_11295001 chr2R_11295001 RAL-819 1121 chr2R 11344145 11344152 chr2R 11344266 11344273 6 121 0.0 25.0 12.5 0.4 128 chr2R 11344145 intergenic alphaTry - chr2R 11344209 intergenic alphaTry - chr2R 11344273 3` UTR alphaTry - chr2R_6_11340001 chr2R_11340001 RAL-819 1122 chr2R 11344154 11344180 chr2R 11344265 11344297 10 118 0.0 24.5 12.2 0.8 143 chr2R 11344154 intergenic alphaTry - chr2R 11344226 intergenic alphaTry - chr2R 11344297 3` UTR alphaTry - chr2R_10_11340001 chr2R_11340001 RAL-819 1123 chr2R 11368014 11368055 chr2R 11368115 11368156 27 100 11.5 16.5 14.0 1.8 142 chr2R 11368014 intron CG13204 + chr2R 11368085 intron CG13204 + chr2R 11368156 intron CG13204 + chr2R_27_11365001 chr2R_11365001 RAL-819 1124 chr2R 11415506 11415551 chr2R 11418665 11418725 opus 37 3167 9.5 10.5 10.0 3.4 3219 chr2R 11415506 intron Drip - chr2R 11417116 intron Drip - chr2R 11418725 intron Drip - chr2R_37_11415001 chr2R_11415001 RAL-819 1125 chr2R 11419838 11419897 chr2R 11419993 11420034 54 152 9.5 11.0 10.2 4.8 196 chr2R 11419838 intron Drip - chr2R 11419936 intron Drip - chr2R 11420034 intron Drip - chr2R_54_11415001 chr2R_11415001 RAL-819 1126 chr2R 11429884 11429943 chr2R 11430029 11430083 8 144 0.0 5.5 2.8 2.1 199 chr2R 11429884 intergenic Drip - chr2R 11429984 intergenic Drip - chr2R 11430083 intergenic Drip - chr2R_8_11425001 chr2R_11425001 RAL-819 1127 chr2R 1320201 1320201 chr2R 11463556 11463556 invader1 6 10143355 92.0 54.0 73.0 0.1 10143355 chr2R 1320201 intergenic not near genes chr2R 6391878 intergenic not near genes chr2R 11463556 3` UTR E(Pc) + chr2R_6_6390001 chr2R_6390001 RAL-819 1128 chr2R 11468117 11468172 chr2R 11468671 11468726 25 554 27.5 10.5 19.0 1.2 609 chr2R 11468117 intergenic not near genes chr2R 11468422 intergenic not near genes chr2R 11468726 intergenic not near genes chr2R_25_11465001 chr2R_11465001 RAL-819 1129 chr2R 11472628 11472675 chr2R 11473845 11473897 pogo 40 1220 19.0 18.0 18.5 2.1 1269 chr2R 11472628 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473897 intergenic not near genes chr2R_40_11470001 chr2R_11470001 RAL-819 1130 chr2R 11494575 11494610 chr2R 11494689 11494724 26 113 21.5 12.0 16.8 1.5 149 chr2R 11494575 intron inv + chr2R 11494650 intron inv + chr2R 11494724 intron inv + chr2R_26_11490001 chr2R_11490001 RAL-819 1131 chr2R 11494612 11494633 chr2R 11494685 11494742 17 107 8.0 10.5 9.2 1.7 130 chr2R 11494612 intron inv + chr2R 11494677 intron inv + chr2R 11494742 intron inv + chr2R_17_11490001 chr2R_11490001 RAL-819 1132 chr2R 11535940 11535942 chr2R 20507051 20507070 7 8971125 31.5 10.5 21.0 0.3 8971130 chr2R 11535940 intergenic not near genes chr2R 16021505 intron CG8399 + chr2R 20507070 intergenic CR44645 + chr2R_7_16020001 chr2R_16020001 RAL-819 1133 chr2R 11540446 11540501 chr2R 11540584 11540639 47 137 13.0 11.5 12.2 3.6 193 chr2R 11540446 intergenic not near genes chr2R 11540542 intergenic not near genes chr2R 11540639 intergenic not near genes chr2R_47_11540001 chr2R_11540001 RAL-819 1134 chr2R 11555370 11555425 chr2R 11555730 11555785 27 359 4.0 8.0 6.0 3.9 415 chr2R 11555370 intergenic not near genes chr2R 11555578 intergenic not near genes chr2R 11555785 intergenic not near genes chr2R_27_11555001 chr2R_11555001 RAL-819 1135 chr2R 11575028 11575036 chr2R 11575148 11575156 9 120 0.0 17.5 8.8 0.9 128 chr2R 11575028 intergenic not near genes chr2R 11575092 intergenic not near genes chr2R 11575156 intergenic not near genes chr2R_9_11575001 chr2R_11575001 RAL-819 1136 chr2R 11625291 11625294 chr2R 11625394 11625397 6 103 16.5 0.0 8.2 0.7 106 chr2R 11625291 5` UTR CG9005 - chr2R 11625344 intron CG9005 - chr2R 11625397 intron CG9005 - chr2R_6_11625001 chr2R_11625001 RAL-819 1137 chr2R 11632532 11632577 chr2R 11632624 11632669 47 84 12.0 13.5 12.8 3.4 137 chr2R 11632532 intron CG9005 - chr2R 11632600 intron CG9005 - chr2R 11632669 intron CG9005 - chr2R_47_11630001 chr2R_11630001 RAL-819 1138 chr2R 11636417 11636424 chr2R 11636486 11636502 7 80 39.5 13.0 26.2 0.3 85 chr2R 11636417 intron CG9005 - chr2R 11636460 intron CG9005 - chr2R 11636502 intron CG9005 - chr2R_7_11635001 chr2R_11635001 RAL-819 1139 chr2R 11636425 11636442 chr2R 11636485 11636545 18 83 18.5 12.5 15.5 1.1 120 chr2R 11636425 intron CG9005 - chr2R 11636485 intron CG9005 - chr2R 11636545 intron CG9005 - chr2R_18_11635001 chr2R_11635001 RAL-819 1140 chr2R 11660344 11660399 chr2R 11660486 11660541 25 140 1.0 11.0 6.0 3.6 197 chr2R 11660344 intron Roc2 - chr2R 11660442 intron Roc2 - chr2R 11660541 intron Roc2 - chr2R_25_11660001 chr2R_11660001 RAL-819 1141 chr2R 11667356 11667402 chr2R 11667475 11667521 35 118 7.0 12.5 9.8 3.2 165 chr2R 11667356 intron,intron Roc2 -,Tret1-1 + chr2R 11667438 intron,intron Roc2 -,Tret1-1 + chr2R 11667521 intron,intron Roc2 -,Tret1-1 + chr2R_35_11665001 chr2R_11665001 RAL-819 1142 chr2R 11672827 11672848 chr2R 11672939 11672960 22 111 13.5 12.0 12.8 1.6 133 chr2R 11672827 intron,exon Roc2 -,Tret1-1 + chr2R 11672894 intron,intron Roc2 -,Tret1-1 + chr2R 11672960 intron,intron Roc2 -,Tret1-1 + chr2R_22_11670001 chr2R_11670001 RAL-819 1143 chr2R 11673822 11673828 chr2R 11677375 11677384 4 3555 32.0 85.5 58.8 0.1 3562 chr2R 11673822 intron,exon Roc2 -,Tret1-1 + chr2R 11675603 intron Roc2 - chr2R 11677384 intron,exon Roc2 -,Tret1-2 + chr2R_4_11675001 chr2R_11675001 RAL-819 1144 chr2R 11724133 11724190 chr2R 11724241 11724287 25 107 8.0 12.0 10.0 2.3 154 chr2R 11724133 intron pyr + chr2R 11724210 intron pyr + chr2R 11724287 intron pyr + chr2R_25_11720001 chr2R_11720001 RAL-819 1145 chr2R 11739143 11739162 chr2R 11739243 11739276 14 110 8.5 11.5 10.0 1.3 133 chr2R 11739143 intergenic not near genes chr2R 11739210 intergenic not near genes chr2R 11739276 intergenic not near genes chr2R_14_11735001 chr2R_11735001 RAL-819 1146 chr2R 11803152 11803169 chr2R 11803246 11803279 10 105 5.5 13.5 9.5 1.0 127 chr2R 11803152 intron ths + chr2R 11803216 intron ths + chr2R 11803279 intron ths + chr2R_10_11800001 chr2R_11800001 RAL-819 1147 chr2R 11955355 11955377 chr2R 11955459 11955481 13 103 12.5 0.5 6.5 1.7 126 chr2R 11955355 intron CG13188 + chr2R 11955418 intron CG13188 + chr2R 11955481 intron CG13188 + chr2R_13_11955001 chr2R_11955001 RAL-819 1148 chr2R 11970800 11970858 chr2R 11970904 11970910 37 103 9.0 10.0 9.5 3.5 110 chr2R 11970800 5` UTR CG8290 + chr2R 11970855 5` UTR CG8290 + chr2R 11970910 5` UTR CG8290 + chr2R_37_11970001 chr2R_11970001 RAL-819 1149 chr2R 12061032 12061090 chr2R 12061137 12061196 11 106 6.0 0.0 3.0 2.8 164 chr2R 12061032 intron Drep-3 + chr2R 12061114 intron Drep-3 + chr2R 12061196 intron Drep-3 + chr2R_11_12060001 chr2R_12060001 RAL-819 1150 chr2R 12087268 12087273 chr2R 12087347 12087380 6 102 10.0 18.5 14.2 0.4 112 chr2R 12087268 3` UTR jeb - chr2R 12087324 3` UTR jeb - chr2R 12087380 3` UTR jeb - chr2R_6_12085001 chr2R_12085001 RAL-819 1151 chr2R 12093928 12093982 chr2R 12094063 12094115 43 135 11.5 19.0 15.2 2.7 187 chr2R 12093928 intron jeb - chr2R 12094022 intron jeb - chr2R 12094115 intron jeb - chr2R_43_12090001 chr2R_12090001 RAL-819 1152 chr2R 12108077 12108081 chr2R 12108207 12108211 6 130 8.5 0.0 4.2 1.2 134 chr2R 12108077 intron jeb - chr2R 12108144 intron jeb - chr2R 12108211 intron jeb - chr2R_6_12105001 chr2R_12105001 RAL-819 1153 chr2R 12185977 12186037 chr2R 12186097 12186131 83 115 16.0 19.5 17.8 4.4 154 chr2R 12185977 intron Cyp6g1 + chr2R 12186054 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_83_12185001 chr2R_12185001 RAL-819 1154 chr2R 12185222 12185228 chr2R 12188122 12188144 21 2903 97.5 372.0 234.8 0.1 2922 chr2R 12185222 3` UTR,exon CG13175 +,CG33964 + chr2R 12186683 exon Cyp6g1 + chr2R 12188144 3` UTR Cyp6g1 + chr2R_21_12185001 chr2R_12185001 RAL-819 1155 chr2R 12189381 12189383 chr2R 12189599 12189601 4 218 321.0 335.5 328.2 0.0 220 chr2R 12189381 exon Cyp6g2 - chr2R 12189491 exon Cyp6g2 - chr2R 12189601 exon Cyp6g2 - chr2R_4_12185001 chr2R_12185001 RAL-819 1156 chr2R 12189386 12189409 chr2R 12189596 12189622 23 210 308.5 328.0 318.2 0.1 236 chr2R 12189386 exon Cyp6g2 - chr2R 12189504 exon Cyp6g2 - chr2R 12189622 exon Cyp6g2 - chr2R_23_12185001 chr2R_12185001 RAL-819 1157 chr2R 12187473 12187506 chr2R 12190064 12190097 71 2596 311.5 311.0 311.2 0.2 2624 chr2R 12187473 exon Cyp6g1 + chr2R 12188785 exon Cyp6g2 - chr2R 12190097 exon Cyp6g2 - chr2R_71_12185001 chr2R_12185001 RAL-819 1158 chr2R 12187472 12187522 chr2R 12190098 12190124 95 2607 343.0 256.5 299.8 0.3 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_95_12185001 chr2R_12185001 RAL-819 1159 chr2R 12217551 12217603 chr2R 12217657 12217709 33 104 12.0 15.0 13.5 2.3 158 chr2R 12217551 intergenic not near genes chr2R 12217630 intergenic not near genes chr2R 12217709 intergenic not near genes chr2R_33_12215001 chr2R_12215001 RAL-819 1160 chr2R 12284289 12284329 chr2R 12284398 12284438 21 107 0.0 15.0 7.5 2.5 149 chr2R 12284289 intron CG42700 + chr2R 12284364 intron CG42700 + chr2R 12284438 intron CG42700 + chr2R_21_12280001 chr2R_12280001 RAL-819 1161 chr2R 12320706 12320736 chr2R 12320990 12321021 15 284 10.5 20.0 15.2 0.9 315 chr2R 12320706 3` UTR CR44316 - chr2R 12320864 intron CR44316 - chr2R 12321021 intergenic CR44316 -,CG13163 + chr2R_15_12320001 chr2R_12320001 RAL-819 1162 chr2R 12334864 12334880 chr2R 12334967 12334983 11 103 24.5 30.5 27.5 0.4 119 chr2R 12334864 intergenic CG8490 + chr2R 12334924 intergenic CG8490 + chr2R 12334983 intergenic CG8490 + chr2R_11_12330001 chr2R_12330001 RAL-819 1163 chr2R 12481139 12481142 chr2R 12482942 12482966 roo 5 1820 14.0 18.5 16.2 0.3 1827 chr2R 12481139 exon Dh44-R2 + chr2R 12482052 intron Dh44-R2 + chr2R 12482966 intron Dh44-R2 + chr2R_5_12480001 chr2R_12480001 RAL-819 1164 chr2R 12481147 12481170 chr2R 12482939 12482984 roo 22 1814 5.0 16.5 10.8 1.9 1837 chr2R 12481147 exon Dh44-R2 + chr2R 12482066 intron Dh44-R2 + chr2R 12482984 intron Dh44-R2 + chr2R_22_12480001 chr2R_12480001 RAL-819 1165 chr2R 12491045 12491054 chr2R 12491181 12491190 7 135 28.0 18.5 23.2 0.3 145 chr2R 12491045 intron fdl - chr2R 12491118 intron fdl - chr2R 12491190 intron fdl - chr2R_7_12490001 chr2R_12490001 RAL-819 1166 chr2R 12491056 12491084 chr2R 12491180 12491187 6 124 16.0 18.0 17.0 0.3 131 chr2R 12491056 intron fdl - chr2R 12491122 intron fdl - chr2R 12491187 intron fdl - chr2R_6_12490001 chr2R_12490001 RAL-819 1167 chr2R 12501677 12501682 chr2R 12503864 12503869 Rt1c 4 2187 41.0 23.5 32.2 0.1 2192 chr2R 12501677 intron fdl - chr2R 12502773 intron fdl - chr2R 12503869 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-819 1168 chr2R 12501684 12501707 chr2R 12503857 12503894 Rt1c 23 2182 27.0 21.0 24.0 0.9 2210 chr2R 12501684 intron fdl - chr2R 12502789 intron fdl - chr2R 12503894 intron fdl - chr2R_23_12500001 chr2R_12500001 RAL-819 1169 chr2R 12501711 12501721 chr2R 12503853 12503908 Rt1c 14 2174 18.5 19.0 18.8 0.7 2197 chr2R 12501711 intron fdl - chr2R 12502810 intron fdl - chr2R 12503908 intron fdl - chr2R_14_12500001 chr2R_12500001 RAL-819 1170 chr2R 12565555 12565594 chr2R 12565963 12566002 27 408 5.0 10.5 7.8 3.1 447 chr2R 12565555 intergenic not near genes chr2R 12565778 intergenic Cyp301a1 + chr2R 12566002 intergenic Cyp301a1 + chr2R_27_12565001 chr2R_12565001 RAL-819 1171 chr2R 12602783 12602837 chr2R 12602892 12602946 47 108 11.5 8.5 10.0 4.3 163 chr2R 12602783 intron Amph + chr2R 12602864 intron Amph + chr2R 12602946 intron Amph + chr2R_47_12600001 chr2R_12600001 RAL-819 1172 chr2R 12643762 12643819 chr2R 12643863 12643916 34 93 10.5 11.0 10.8 2.9 154 chr2R 12643762 intron CG8785 - chr2R 12643839 intron CG8785 - chr2R 12643916 exon CG8785 - chr2R_34_12640001 chr2R_12640001 RAL-819 1173 chr2R 12661988 12662038 chr2R 12662114 12662164 52 124 18.0 17.0 17.5 2.8 176 chr2R 12661988 intron nemy - chr2R 12662076 intron nemy - chr2R 12662164 intron nemy - chr2R_52_12660001 chr2R_12660001 RAL-819 1174 chr2R 12702302 12702307 chr2R 12702408 12702413 5 106 19.5 11.0 15.2 0.3 111 chr2R 12702302 intergenic not near genes chr2R 12702358 intergenic not near genes chr2R 12702413 intergenic not near genes chr2R_5_12700001 chr2R_12700001 RAL-819 1175 chr2R 12702312 12702349 chr2R 12702403 12702456 15 104 8.0 9.5 8.8 1.5 144 chr2R 12702312 intergenic not near genes chr2R 12702384 intergenic not near genes chr2R 12702456 intergenic not near genes chr2R_15_12700001 chr2R_12700001 RAL-819 1176 chr2R 12707510 12707517 chr2R 12715901 12715908 roo 7 8391 15.0 9.5 12.2 0.5 8398 chr2R 12707510 intron CG42663 + chr2R 12711709 intron CG42663 + chr2R 12715908 intron CG42663 + chr2R_7_12710001 chr2R_12710001 RAL-819 1177 chr2R 12707518 12707549 chr2R 12715896 12715940 roo 29 8390 6.5 9.5 8.0 3.2 8422 chr2R 12707518 intron CG42663 + chr2R 12711729 intron CG42663 + chr2R 12715940 intron CG42663 + chr2R_29_12710001 chr2R_12710001 RAL-819 1178 chr2R 12728852 12728856 chr2R 12728979 12728984 7 127 0.0 12.5 6.2 1.0 132 chr2R 12728852 intron CG42663 + chr2R 12728918 intron CG42663 + chr2R 12728984 intron CG42663 + chr2R_7_12725001 chr2R_12725001 RAL-819 1179 chr2R 12728857 12728905 chr2R 12728975 12729028 17 123 0.0 11.0 5.5 2.6 171 chr2R 12728857 intron CG42663 + chr2R 12728942 intron CG42663 + chr2R 12729028 intron CG42663 + chr2R_17_12725001 chr2R_12725001 RAL-819 1180 chr2R 12765865 12765933 chr2R 12766016 12766032 14 132 0.5 8.5 4.5 2.5 167 chr2R 12765865 intergenic not near genes chr2R 12765948 intergenic not near genes chr2R 12766032 intergenic not near genes chr2R_14_12765001 chr2R_12765001 RAL-819 1181 chr2R 12777797 12777801 chr2R 12777920 12777924 4 123 0.0 14.5 7.2 0.5 127 chr2R 12777797 5` UTR CR45266 + chr2R 12777860 5` UTR CR45266 + chr2R 12777924 5` UTR CR45266 + chr2R_4_12775001 chr2R_12775001 RAL-819 1182 chr2R 12789267 12789277 chr2R 12797657 12797665 roo 6 8388 39.0 14.0 26.5 0.2 8398 chr2R 12789267 intron,3` UTR sca +,CR45137 - chr2R 12793466 intron,intron sca +,CR45137 - chr2R 12797665 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-819 1183 chr2R 12789278 12789283 chr2R 12797656 12797671 roo 4 8385 35.5 13.0 24.2 0.2 8393 chr2R 12789278 intron,3` UTR sca +,CR45137 - chr2R 12793474 intron,intron sca +,CR45137 - chr2R 12797671 intron,3` UTR sca +,CR45137 - chr2R_4_12790001 chr2R_12790001 RAL-819 1184 chr2R 12789286 12789323 chr2R 12797655 12797707 roo 38 8379 15.0 12.0 13.5 2.6 8421 chr2R 12789286 intron,3` UTR sca +,CR45137 - chr2R 12793496 intron,intron sca +,CR45137 - chr2R 12797707 intron,3` UTR sca +,CR45137 - chr2R_38_12790001 chr2R_12790001 RAL-819 1185 chr2R 12819435 12819479 chr2R 12824525 12824558 jockey 34 5079 10.0 16.5 13.2 2.4 5123 chr2R 12819435 intergenic not near genes chr2R 12821996 intergenic not near genes chr2R 12824558 intergenic not near genes chr2R_34_12820001 chr2R_12820001 RAL-819 1186 chr2R 12845389 12845440 chr2R 12845495 12845542 30 103 13.5 4.5 9.0 3.0 153 chr2R 12845389 intergenic CG17575 - chr2R 12845466 intergenic CG17575 - chr2R 12845542 intergenic CG17575 - chr2R_30_12845001 chr2R_12845001 RAL-819 1187 chr2R 13043028 13043063 chr2R 13043133 13043167 15 105 0.0 7.0 3.5 3.3 139 chr2R 13043028 intergenic not near genes chr2R 13043098 intergenic not near genes chr2R 13043167 intergenic not near genes chr2R_15_13040001 chr2R_13040001 RAL-819 1188 chr2R 13119966 13119981 chr2R 13120163 13120173 12 197 31.0 11.5 21.2 0.5 207 chr2R 13119966 intron CG13325 + chr2R 13120070 intron CG13325 + chr2R 13120173 intron CG13325 + chr2R_12_13120001 chr2R_13120001 RAL-819 1189 chr2R 13119982 13120021 chr2R 13120159 13120218 49 193 10.0 7.0 8.5 5.2 236 chr2R 13119982 intron CG13325 + chr2R 13120100 intron CG13325 + chr2R 13120218 intron CG13325 + chr2R_49_13120001 chr2R_13120001 RAL-819 1190 chr2R 13136815 13136856 chr2R 13141638 13141679 Doc 38 4821 15.0 14.0 14.5 2.5 4864 chr2R 13136815 exon Cap-G + chr2R 13139247 intron Cap-G + chr2R 13141679 intron Cap-G + chr2R_38_13135001 chr2R_13135001 RAL-819 1191 chr2R 13136860 13136864 chr2R 13141637 13141687 Doc 5 4812 11.5 13.5 12.5 0.4 4827 chr2R 13136860 intron Cap-G + chr2R 13139274 intron Cap-G + chr2R 13141687 intron Cap-G + chr2R_5_13135001 chr2R_13135001 RAL-819 1192 chr2R 13167407 13167429 chr2R 13167526 13167548 17 119 23.0 0.0 11.5 1.4 141 chr2R 13167407 intron GLaz - chr2R 13167478 intron GLaz - chr2R 13167548 intron GLaz - chr2R_17_13165001 chr2R_13165001 RAL-819 1193 chr2R 13167430 13167441 chr2R 13167523 13167560 16 115 20.5 0.0 10.2 1.4 130 chr2R 13167430 intron GLaz - chr2R 13167495 intron GLaz - chr2R 13167560 intron GLaz - chr2R_16_13165001 chr2R_13165001 RAL-819 1194 chr2R 13174625 13174655 chr2R 13174743 13174779 30 122 21.5 17.5 19.5 1.5 154 chr2R 13174625 exon AGBE + chr2R 13174702 3` UTR AGBE + chr2R 13174779 3` UTR AGBE + chr2R_30_13170001 chr2R_13170001 RAL-819 1195 chr2R 13174658 13174678 chr2R 13174742 13174780 18 114 11.5 17.5 14.5 1.2 122 chr2R 13174658 3` UTR AGBE + chr2R 13174719 3` UTR AGBE + chr2R 13174780 3` UTR AGBE + chr2R_18_13170001 chr2R_13170001 RAL-819 1196 chr2R 13194824 13194851 chr2R 13194946 13194973 14 119 32.0 17.5 24.8 0.5 149 chr2R 13194824 intergenic not near genes chr2R 13194898 intergenic not near genes chr2R 13194973 intergenic not near genes chr2R_14_13190001 chr2R_13190001 RAL-819 1197 chr2R 13213404 13213427 chr2R 13213516 13213539 4 103 5.5 0.5 3.0 1.0 135 chr2R 13213404 exon AQP - chr2R 13213472 intron AQP - chr2R 13213539 intron AQP - chr2R_4_13210001 chr2R_13210001 RAL-819 1198 chr2R 13220513 13220553 chr2R 13220616 13220677 7 109 0.0 8.5 4.2 1.3 164 chr2R 13220513 intron CG17059 + chr2R 13220595 intron CG17059 + chr2R 13220677 intron CG17059 + chr2R_7_13220001 chr2R_13220001 RAL-819 1199 chr2R 13261131 13261178 chr2R 13261251 13261298 33 118 8.0 13.5 10.8 2.8 167 chr2R 13261131 intron CG42319 + chr2R 13261214 intron CG42319 + chr2R 13261298 intron CG42319 + chr2R_33_13260001 chr2R_13260001 RAL-819 1200 chr2R 13305475 13305509 chr2R 13305582 13305616 32 105 21.0 18.5 19.8 1.5 141 chr2R 13305475 intergenic not near genes chr2R 13305546 intergenic not near genes chr2R 13305616 intergenic not near genes chr2R_32_13305001 chr2R_13305001 RAL-819 1201 chr2R 13309647 13309682 chr2R 13309790 13309825 17 143 5.5 12.5 9.0 1.7 178 chr2R 13309647 intergenic not near genes chr2R 13309736 intergenic not near genes chr2R 13309825 intergenic not near genes chr2R_17_13305001 chr2R_13305001 RAL-819 1202 chr2R 13368732 13368789 chr2R 13368868 13368925 23 136 8.5 5.5 7.0 2.9 193 chr2R 13368732 intergenic not near genes chr2R 13368828 intergenic not near genes chr2R 13368925 intergenic not near genes chr2R_23_13365001 chr2R_13365001 RAL-819 1203 chr2R 13429619 13429670 chr2R 13429724 13429773 65 103 8.5 10.5 9.5 6.2 154 chr2R 13429619 intron CG42321 - chr2R 13429696 intron CG42321 - chr2R 13429773 intron CG42321 - chr2R_65_13425001 chr2R_13425001 RAL-819 1204 chr2R 13431466 13431520 chr2R 13431570 13431624 48 103 7.0 10.5 8.8 4.9 158 chr2R 13431466 intron CG42321 - chr2R 13431545 intron CG42321 - chr2R 13431624 intron CG42321 - chr2R_48_13430001 chr2R_13430001 RAL-819 1205 chr2R 13439084 13439139 chr2R 13439224 13439278 38 138 5.0 10.5 7.8 4.3 194 chr2R 13439084 intergenic CG42321 -,cnn - chr2R 13439181 intergenic CG42321 -,cnn - chr2R 13439278 intergenic cnn -,CG42321 - chr2R_38_13435001 chr2R_13435001 RAL-819 1206 chr2R 13468492 13468547 chr2R 13469250 13469309 65 760 11.5 10.0 10.8 5.5 817 chr2R 13468492 intron arr - chr2R 13468900 intron arr - chr2R 13469309 intron arr - chr2R_65_13465001 chr2R_13465001 RAL-819 1207 chr2R 13568151 13568193 chr2R 13568259 13568299 8 106 6.0 4.5 5.2 1.3 148 chr2R 13568151 intergenic not near genes chr2R 13568225 intergenic not near genes chr2R 13568299 intergenic not near genes chr2R_8_13565001 chr2R_13565001 RAL-819 1208 chr2R 13577411 13577465 chr2R 13577511 13577567 46 98 9.0 11.0 10.0 4.2 156 chr2R 13577411 5` UTR CR44365 + chr2R 13577489 5` UTR CR44365 + chr2R 13577567 intergenic CR44365 +,CR44366 + chr2R_46_13575001 chr2R_13575001 RAL-819 1209 chr2R 13580485 13580528 chr2R 13580851 13580896 jockey 42 371 0.5 13.5 7.0 5.2 411 chr2R 13580485 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580896 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_42_13580001 chr2R_13580001 RAL-819 1210 chr2R 13631041 13631091 chr2R 13631167 13631213 29 122 7.5 9.5 8.5 3.1 172 chr2R 13631041 intron fas + chr2R 13631127 intron fas + chr2R 13631213 intron fas + chr2R_29_13630001 chr2R_13630001 RAL-819 1211 chr2R 13663577 13663637 chr2R 13663680 13663740 50 102 11.5 10.5 11.0 4.2 163 chr2R 13663577 intron,5` UTR fas +,CG6209 - chr2R 13663658 intron fas + chr2R 13663740 intron fas + chr2R_50_13660001 chr2R_13660001 RAL-819 1212 chr2R 13684239 13684272 chr2R 13684342 13684375 17 103 11.5 8.5 10.0 1.5 136 chr2R 13684239 intron fas + chr2R 13684307 intron fas + chr2R 13684375 intron fas + chr2R_17_13680001 chr2R_13680001 RAL-819 1213 chr2R 13686685 13686715 chr2R 13686790 13686807 21 103 17.0 8.0 12.5 1.6 122 chr2R 13686685 intron fas + chr2R 13686746 intron fas + chr2R 13686807 intron fas + chr2R_21_13685001 chr2R_13685001 RAL-819 1214 chr2R 13727828 13727848 chr2R 13727939 13727948 10 104 10.5 32.0 21.2 0.5 120 chr2R 13727828 intron fas + chr2R 13727888 intron fas + chr2R 13727948 intron fas + chr2R_10_13725001 chr2R_13725001 RAL-819 1215 chr2R 13728108 13728166 chr2R 13735790 13735838 opus 43 7681 14.5 11.5 13.0 3.1 7730 chr2R 13728108 intron fas + chr2R 13731973 intron fas + chr2R 13735838 intron fas + chr2R_43_13730001 chr2R_13730001 RAL-819 1216 chr2R 13741212 13741251 chr2R 13741337 13741359 8 121 39.0 53.5 46.2 0.2 147 chr2R 13741212 intron fas + chr2R 13741286 intron fas + chr2R 13741359 intron fas + chr2R_8_13740001 chr2R_13740001 RAL-819 1217 chr2R 13749473 13749527 chr2R 13749587 13749641 46 112 11.0 8.0 9.5 4.4 168 chr2R 13749473 intergenic fas + chr2R 13749557 intergenic fas + chr2R 13749641 intergenic fas + chr2R_46_13745001 chr2R_13745001 RAL-819 1218 chr2R 13768958 13768998 chr2R 13769082 13769122 34 121 17.0 15.0 16.0 2.0 164 chr2R 13768958 intergenic not near genes chr2R 13769040 intergenic not near genes chr2R 13769122 intergenic not near genes chr2R_34_13765001 chr2R_13765001 RAL-819 1219 chr2R 13768999 13769010 chr2R 13769077 13769098 16 114 10.5 13.0 11.8 1.2 99 chr2R 13768999 intergenic not near genes chr2R 13769048 intergenic not near genes chr2R 13769098 intergenic not near genes chr2R_16_13765001 chr2R_13765001 RAL-819 1220 chr2R 13790303 13790339 chr2R 13790404 13790410 13 98 16.5 0.0 8.2 1.4 107 chr2R 13790303 intergenic not near genes chr2R 13790356 intergenic not near genes chr2R 13790410 intergenic not near genes chr2R_13_13790001 chr2R_13790001 RAL-819 1221 chr2R 13793121 13793161 chr2R 13793222 13793262 33 96 14.5 9.0 11.8 2.6 141 chr2R 13793121 intergenic not near genes chr2R 13793192 intergenic not near genes chr2R 13793262 intergenic not near genes chr2R_33_13790001 chr2R_13790001 RAL-819 1222 chr2R 13905582 13905608 chr2R 13907587 13907604 Rt1a 17 2003 21.0 18.5 19.8 0.8 2022 chr2R 13905582 intron shot - chr2R 13906593 intron shot - chr2R 13907604 intron shot - chr2R_17_13905001 chr2R_13905001 RAL-819 1223 chr2R 13905610 13905630 chr2R 13907586 13907637 Rt1a 25 2000 12.0 18.0 15.0 1.6 2027 chr2R 13905610 intron shot - chr2R 13906624 intron shot - chr2R 13907637 intron shot - chr2R_25_13905001 chr2R_13905001 RAL-819 1224 chr2R 13924442 13924461 chr2R 13924583 13924602 15 140 22.5 6.0 14.2 1.0 160 chr2R 13924442 intron shot - chr2R 13924522 intron shot - chr2R 13924602 intron shot - chr2R_15_13920001 chr2R_13920001 RAL-819 1225 chr2R 13925843 13925893 chr2R 13926022 13926072 45 178 10.5 10.5 10.5 3.9 229 chr2R 13925843 intron shot - chr2R 13925958 intron shot - chr2R 13926072 intron shot - chr2R_45_13925001 chr2R_13925001 RAL-819 1226 chr2R 13995229 13995239 chr2R 13995326 13995351 8 107 0.0 27.0 13.5 0.6 122 chr2R 13995229 intron mam + chr2R 13995290 intron mam + chr2R 13995351 intron mam + chr2R_8_13995001 chr2R_13995001 RAL-819 1227 chr2R 14050829 14050849 chr2R 14050940 14050959 4 108 19.0 24.5 21.8 0.2 130 chr2R 14050829 intron mam + chr2R 14050894 intron mam + chr2R 14050959 intron mam + chr2R_4_14050001 chr2R_14050001 RAL-819 1228 chr2R 14093407 14093420 chr2R 14109584 14109597 8 16177 22.0 4.5 13.2 0.6 16190 chr2R 14093407 intron Prosap - chr2R 14101502 intron Prosap - chr2R 14109597 intron Prosap - chr2R_8_14100001 chr2R_14100001 RAL-819 1229 chr2R 14168341 14168398 chr2R 14168455 14168507 37 110 9.5 16.0 12.8 2.7 166 chr2R 14168341 intergenic CG18327 +,CG18324 + chr2R 14168424 intergenic CG18327 +,CG18324 +,CR44368 - chr2R 14168507 intergenic CG18327 +,CG18324 +,CR44368 - chr2R_37_14165001 chr2R_14165001 RAL-819 1230 chr2R 14181855 14181856 chr2R 15578507 15578510 5 1396654 70.5 23.0 46.8 0.1 1396655 chr2R 14181855 3` UTR cg + chr2R 14880182 intron Cyp6a9 - chr2R 15578510 intergenic not near genes chr2R_5_14880001 chr2R_14880001 RAL-819 1231 chr2R 14285031 14285050 chr2R 14285139 14285158 19 107 5.0 16.0 10.5 1.7 127 chr2R 14285031 intron Ih + chr2R 14285094 intron Ih + chr2R 14285158 intron Ih + chr2R_19_14285001 chr2R_14285001 RAL-819 1232 chr2R 14350245 14350257 chr2R 14350356 14350368 5 107 16.5 44.5 30.5 0.2 123 chr2R 14350245 exon Shroom + chr2R 14350306 exon Shroom + chr2R 14350368 exon Shroom + chr2R_5_14350001 chr2R_14350001 RAL-819 1233 chr2R 14352665 14352719 chr2R 14352784 14352836 52 115 24.0 15.5 19.8 2.5 171 chr2R 14352665 exon CG8613 + chr2R 14352750 intron CG8613 + chr2R 14352836 intron CG8613 + chr2R_52_14350001 chr2R_14350001 RAL-819 1234 chr2R 14357532 14357565 chr2R 14357647 14357673 21 112 18.0 20.5 19.2 1.0 141 chr2R 14357532 intergenic CG8617 -,Arc1 - chr2R 14357602 intergenic CG8617 -,Arc1 - chr2R 14357673 intergenic Arc1 -,CG8617 - chr2R_21_14355001 chr2R_14355001 RAL-819 1235 chr2R 14357572 14357576 chr2R 14357646 14357691 8 104 12.5 20.0 16.2 0.5 119 chr2R 14357572 intergenic CG8617 -,Arc1 - chr2R 14357632 intergenic Arc1 -,CG8617 - chr2R 14357691 intergenic Arc1 -,CG8617 - chr2R_8_14355001 chr2R_14355001 RAL-819 1236 chr2R 14393845 14393896 chr2R 14393949 14394006 46 107 13.5 10.5 12.0 3.5 161 chr2R 14393845 intergenic not near genes chr2R 14393926 intergenic not near genes chr2R 14394006 intergenic not near genes chr2R_46_14390001 chr2R_14390001 RAL-819 1237 chr2R 14394205 14394251 chr2R 14399019 14399034 Doc 17 4810 16.0 9.0 12.5 1.3 4829 chr2R 14394205 intergenic not near genes chr2R 14396620 intergenic not near genes chr2R 14399034 intergenic not near genes chr2R_17_14395001 chr2R_14395001 RAL-819 1238 chr2R 14467286 14467326 chr2R 14476464 14476509 roo 32 9181 6.5 11.5 9.0 3.2 9223 chr2R 14467286 intergenic not near genes chr2R 14471898 intergenic not near genes chr2R 14476509 5` UTR CR44462 + chr2R_32_14470001 chr2R_14470001 RAL-819 1239 chr2R 14497362 14497417 chr2R 14498550 14498608 1360 25 1188 0.5 8.5 4.5 4.5 1246 chr2R 14497362 3` UTR Cpsf160 - chr2R 14497985 intron Cpsf160 - chr2R 14498608 3` UTR Cpsf160 - chr2R_25_14495001 chr2R_14495001 RAL-819 1240 chr2R 14514461 14514495 chr2R 14514582 14514619 10 122 16.5 13.0 14.8 0.6 158 chr2R 14514461 intron,intron Cpr51A -,CG30197 + chr2R 14514540 intron,intron Cpr51A -,CG30197 + chr2R 14514619 intron,intron Cpr51A -,CG30197 + chr2R_10_14510001 chr2R_14510001 RAL-819 1241 chr2R 14538937 14538978 chr2R 14539038 14539074 21 98 21.0 25.0 23.0 0.9 137 chr2R 14538937 intron ttv + chr2R 14539006 intron ttv + chr2R 14539074 intron ttv + chr2R_21_14535001 chr2R_14535001 RAL-819 1242 chr2R 14538981 14538986 chr2R 14539036 14539054 9 84 30.0 24.5 27.2 0.3 73 chr2R 14538981 intron ttv + chr2R 14539018 intron ttv + chr2R 14539054 intron ttv + chr2R_9_14535001 chr2R_14535001 RAL-819 1243 chr2R 14541199 14541257 chr2R 14541481 14541539 36 280 11.5 8.0 9.8 3.3 340 chr2R 14541199 intron ttv + chr2R 14541369 intron ttv + chr2R 14541539 intron ttv + chr2R_36_14540001 chr2R_14540001 RAL-819 1244 chr2R 14565536 14565593 chr2R 14565638 14565690 48 101 16.0 14.0 15.0 3.0 154 chr2R 14565536 intron ttv + chr2R 14565613 intron ttv + chr2R 14565690 intron ttv + chr2R_48_14565001 chr2R_14565001 RAL-819 1245 chr2R 14566424 14566466 chr2R 14566536 14566578 34 111 21.5 14.5 18.0 1.8 154 chr2R 14566424 intron ttv + chr2R 14566501 intron ttv + chr2R 14566578 intron ttv + chr2R_34_14565001 chr2R_14565001 RAL-819 1246 chr2R 14566467 14566478 chr2R 14566531 14566590 11 103 13.5 12.5 13.0 0.8 123 chr2R 14566467 intron ttv + chr2R 14566528 intron ttv + chr2R 14566590 intron ttv + chr2R_11_14565001 chr2R_14565001 RAL-819 1247 chr2R 14566970 14567013 chr2R 14567078 14567111 47 105 8.5 0.5 4.5 8.5 141 chr2R 14566970 intron ttv + chr2R 14567040 intron ttv + chr2R 14567111 intron ttv + chr2R_47_14565001 chr2R_14565001 RAL-819 1248 chr2R 14580420 14580474 chr2R 14580574 14580628 44 158 104.0 100.5 102.2 0.4 208 chr2R 14580420 intron ttv + chr2R 14580524 intron ttv + chr2R 14580628 intron ttv + chr2R_44_14580001 chr2R_14580001 RAL-819 1249 chr2R 14656099 14656151 chr2R 14656200 14656227 44 98 5.0 10.0 7.5 5.2 128 chr2R 14656099 intergenic not near genes chr2R 14656163 intergenic not near genes chr2R 14656227 intergenic not near genes chr2R_44_14655001 chr2R_14655001 RAL-819 1250 chr2R 14659300 14659333 chr2R 14659404 14659437 17 101 29.5 12.5 21.0 0.8 137 chr2R 14659300 intergenic not near genes chr2R 14659368 intergenic not near genes chr2R 14659437 intergenic not near genes chr2R_17_14655001 chr2R_14655001 RAL-819 1251 chr2R 14699964 14700016 chr2R 14701043 14701095 43 1075 7.0 6.5 6.8 5.5 1131 chr2R 14699964 intron mspo - chr2R 14700530 intron mspo - chr2R 14701095 intron mspo - chr2R_43_14700001 chr2R_14700001 RAL-819 1252 chr2R 14722292 14722301 chr2R 14722416 14722430 10 126 26.0 32.0 29.0 0.3 138 chr2R 14722292 intergenic not near genes chr2R 14722361 intergenic not near genes chr2R 14722430 intergenic not near genes chr2R_10_14720001 chr2R_14720001 RAL-819 1253 chr2R 14737605 14737614 chr2R 14737714 14737723 6 107 19.0 22.0 20.5 0.3 118 chr2R 14737605 3` UTR CR43428 - chr2R 14737664 3` UTR CR43428 - chr2R 14737723 3` UTR CR43428 - chr2R_6_14735001 chr2R_14735001 RAL-819 1254 chr2R 14737615 14737642 chr2R 14737713 14737751 22 104 7.5 21.5 14.5 1.4 136 chr2R 14737615 3` UTR CR43428 - chr2R 14737683 3` UTR CR43428 - chr2R 14737751 3` UTR CR43428 - chr2R_22_14735001 chr2R_14735001 RAL-819 1255 chr2R 14796320 14796359 chr2R 14796442 14796481 19 121 10.5 11.0 10.8 1.6 161 chr2R 14796320 intron kn - chr2R 14796400 intron kn - chr2R 14796481 intron kn - chr2R_19_14795001 chr2R_14795001 RAL-819 1256 chr2R 14799865 14799872 chr2R 14799966 14799973 7 101 2.0 19.0 10.5 0.6 108 chr2R 14799865 intron kn - chr2R 14799919 intron kn - chr2R 14799973 intron kn - chr2R_7_14795001 chr2R_14795001 RAL-819 1257 chr2R 14799876 14799897 chr2R 14799957 14799972 12 94 6.5 16.5 11.5 1.0 96 chr2R 14799876 intron kn - chr2R 14799924 intron kn - chr2R 14799972 intron kn - chr2R_12_14795001 chr2R_14795001 RAL-819 1258 chr2R 14803451 14803506 chr2R 14803556 14803611 17 105 0.0 13.5 6.8 2.2 160 chr2R 14803451 intron kn - chr2R 14803531 intron kn - chr2R 14803611 intron kn - chr2R_17_14800001 chr2R_14800001 RAL-819 1259 chr2R 14842366 14842394 chr2R 14842487 14842514 14 121 12.0 10.0 11.0 1.2 148 chr2R 14842366 intergenic NaPi-T - chr2R 14842440 intergenic NaPi-T - chr2R 14842514 intergenic NaPi-T - chr2R_14_14840001 chr2R_14840001 RAL-819 1260 chr2R 14850033 14850088 chr2R 14850164 14850219 46 130 69.5 80.0 74.8 0.6 186 chr2R 14850033 exon SMC2 - chr2R 14850126 intron SMC2 - chr2R 14850219 exon SMC2 - chr2R_46_14850001 chr2R_14850001 RAL-819 1261 chr2R 14855009 14855064 chr2R 14855126 14855134 27 112 15.5 0.5 8.0 3.0 125 chr2R 14855009 5` UTR Ciao1 - chr2R 14855072 intergenic Ciao1 -,HPS1 + chr2R 14855134 intergenic Ciao1 -,HPS1 + chr2R_27_14855001 chr2R_14855001 RAL-819 1262 chr2R 14889191 14889218 chr2R 14897824 14897838 Max-element 8 8630 23.0 0.5 11.8 0.6 8647 chr2R 14889191 intergenic Cyp6a8 - chr2R 14893514 intergenic not near genes chr2R 14897838 intergenic not near genes chr2R_8_14890001 chr2R_14890001 RAL-819 1263 chr2R 14911675 14911726 chr2R 14911823 14911874 37 147 15.5 11.5 13.5 2.6 199 chr2R 14911675 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911874 intron CG10249 - chr2R_37_14910001 chr2R_14910001 RAL-819 1264 chr2R 14917214 14917271 chr2R 14917330 14917386 43 112 7.0 6.5 6.8 5.5 172 chr2R 14917214 intron CG10249 - chr2R 14917300 intron CG10249 - chr2R 14917386 intron CG10249 - chr2R_43_14915001 chr2R_14915001 RAL-819 1265 chr2R 14919130 14919177 chr2R 14919264 14919311 14 133 5.5 0.5 3.0 3.5 181 chr2R 14919130 intron CG10249 - chr2R 14919220 intron CG10249 - chr2R 14919311 intron CG10249 - chr2R_14_14915001 chr2R_14915001 RAL-819 1266 chr2R 14922122 14922171 chr2R 14922217 14922272 42 97 12.0 9.0 10.5 3.7 150 chr2R 14922122 intron CG10249 - chr2R 14922197 intron CG10249 - chr2R 14922272 intron CG10249 - chr2R_42_14920001 chr2R_14920001 RAL-819 1267 chr2R 14934429 14934459 chr2R 14934542 14934553 14 111 14.5 0.0 7.2 1.7 124 chr2R 14934429 intron CG10253 - chr2R 14934491 intron CG10253 - chr2R 14934553 intron CG10253 - chr2R_14_14930001 chr2R_14930001 RAL-819 1268 chr2R 14979738 14979793 chr2R 14979839 14979894 38 99 11.0 10.5 10.8 3.2 156 chr2R 14979738 3` UTR ckn + chr2R 14979816 3` UTR ckn + chr2R 14979894 3` UTR ckn + chr2R_38_14975001 chr2R_14975001 RAL-819 1269 chr2R 15004701 15004759 chr2R 15005055 15005084 jockey 49 352 19.5 15.0 17.2 2.7 383 chr2R 15004701 intergenic not near genes chr2R 15004892 intergenic not near genes chr2R 15005084 intergenic not near genes chr2R_49_15000001 chr2R_15000001 RAL-819 1270 chr2R 15006157 15006171 chr2R 15006277 15006291 10 120 17.0 26.0 21.5 0.4 134 chr2R 15006157 intergenic not near genes chr2R 15006224 intergenic not near genes chr2R 15006291 intergenic not near genes chr2R_10_15005001 chr2R_15005001 RAL-819 1271 chr2R 15015434 15015470 chr2R 15022883 15022919 mdg1 35 7447 16.0 10.0 13.0 2.5 7485 chr2R 15015434 intron hbs + chr2R 15019176 intron hbs + chr2R 15022919 intron hbs + chr2R_35_15015001 chr2R_15015001 RAL-819 1272 chr2R 15015471 15015489 chr2R 15022879 15022932 mdg1 20 7446 9.0 9.5 9.2 2.0 7461 chr2R 15015471 intron hbs + chr2R 15019202 intron hbs + chr2R 15022932 intron hbs + chr2R_20_15015001 chr2R_15015001 RAL-819 1273 chr2R 15049950 15049958 chr2R 15050201 15050226 8 264 21.5 12.5 17.0 0.4 276 chr2R 15049950 3` UTR CR43622 - chr2R 15050088 3` UTR CR43622 - chr2R 15050226 3` UTR CR43622 - chr2R_8_15050001 chr2R_15050001 RAL-819 1274 chr2R 15084954 15084957 chr2R 15092028 15092031 297 4 7074 37.5 11.5 24.5 0.2 7077 chr2R 15084954 intergenic not near genes chr2R 15088492 intergenic not near genes chr2R 15092031 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-819 1275 chr2R 15084960 15084996 chr2R 15092026 15092070 297 41 7070 20.0 11.5 15.8 2.4 7110 chr2R 15084960 intergenic not near genes chr2R 15088515 intergenic not near genes chr2R 15092070 5` UTR CR44457 + chr2R_41_15085001 chr2R_15085001 RAL-819 1276 chr2R 15094867 15094916 chr2R 15094962 15095018 33 101 15.5 14.5 15.0 2.1 151 chr2R 15094867 intergenic not near genes chr2R 15094942 intergenic not near genes chr2R 15095018 intergenic not near genes chr2R_33_15090001 chr2R_15090001 RAL-819 1277 chr2R 15119300 15119349 chr2R 15127800 15127855 Tirant 36 8502 13.0 8.0 10.5 3.1 8555 chr2R 15119300 intron chn + chr2R 15123578 intron chn + chr2R 15127855 intron chn + chr2R_36_15120001 chr2R_15120001 RAL-819 1278 chr2R 15137943 15138003 chr2R 15138048 15138089 41 104 8.5 3.5 6.0 5.9 146 chr2R 15137943 intron chn + chr2R 15138016 intron chn + chr2R 15138089 intron chn + chr2R_41_15135001 chr2R_15135001 RAL-819 1279 chr2R 15196076 15196126 chr2R 15196187 15196247 48 118 14.5 11.0 12.8 3.5 171 chr2R 15196076 intergenic not near genes chr2R 15196162 intergenic not near genes chr2R 15196247 intergenic not near genes chr2R_48_15195001 chr2R_15195001 RAL-819 1280 chr2R 15230365 15230368 chr2R 15230667 15230670 5 302 61.0 0.0 30.5 0.2 305 chr2R 15230365 intron,5` UTR Fs -,CR44370 + chr2R 15230518 intron,5` UTR Fs -,CR44370 + chr2R 15230670 intron,5` UTR Fs -,CR44370 + chr2R_5_15230001 chr2R_15230001 RAL-819 1281 chr2R 15230361 15230374 chr2R 15230675 15230676 4 305 59.5 0.0 29.8 0.1 315 chr2R 15230361 intron,5` UTR Fs -,CR44370 + chr2R 15230518 intron,5` UTR Fs -,CR44370 + chr2R 15230676 intron,5` UTR Fs -,CR44370 + chr2R_4_15230001 chr2R_15230001 RAL-819 1282 chr2R 15330183 15330238 chr2R 15330342 15330397 38 158 8.0 11.5 9.8 3.5 214 chr2R 15330183 intergenic CR44371 - chr2R 15330290 intergenic CR44371 - chr2R 15330397 3` UTR CR44371 - chr2R_38_15330001 chr2R_15330001 RAL-819 1283 chr2R 15405018 15405047 chr2R 15405167 15405196 17 148 15.0 0.0 7.5 2.0 178 chr2R 15405018 intron,5` UTR CG43729 +,CR45020 + chr2R 15405107 intron CG43729 + chr2R 15405196 intron CG43729 + chr2R_17_15405001 chr2R_15405001 RAL-819 1284 chr2R 15472028 15472058 chr2R 15472121 15472167 8 106 0.0 8.0 4.0 1.6 139 chr2R 15472028 intergenic CG43729 +,CG8180 - chr2R 15472098 intergenic CG8180 -,CG43729 + chr2R 15472167 intergenic CG8180 -,CG43729 + chr2R_8_15470001 chr2R_15470001 RAL-819 1285 chr2R 15606106 15606129 chr2R 15606208 15606231 24 101 17.0 11.5 14.2 1.6 125 chr2R 15606106 intergenic not near genes chr2R 15606168 intergenic not near genes chr2R 15606231 intergenic not near genes chr2R_24_15605001 chr2R_15605001 RAL-819 1286 chr2R 15655957 15655968 chr2R 15656062 15656073 7 103 36.0 11.5 23.8 0.3 116 chr2R 15655957 intron CG42524 + chr2R 15656015 intron CG42524 + chr2R 15656073 intron CG42524 + chr2R_7_15655001 chr2R_15655001 RAL-819 1287 chr2R 15655969 15656011 chr2R 15656061 15656116 40 104 14.0 11.5 12.8 2.9 147 chr2R 15655969 intron CG42524 + chr2R 15656042 intron CG42524 + chr2R 15656116 intron CG42524 + chr2R_40_15655001 chr2R_15655001 RAL-819 1288 chr2R 15685337 15685396 chr2R 15685465 15685517 29 125 16.5 13.5 15.0 1.8 180 chr2R 15685337 intron,exon Ranbp11 +,CG30082 - chr2R 15685427 intron,intron Ranbp11 +,CG30082 - chr2R 15685517 intron,intron Ranbp11 +,CG30082 - chr2R_29_15685001 chr2R_15685001 RAL-819 1289 chr2R 15794864 15794896 chr2R 15794979 15794997 22 114 0.5 0.0 0.2 18.3 133 chr2R 15794864 intron,5` UTR Zasp52 -,tun + chr2R 15794930 intron,5` UTR Zasp52 -,tun + chr2R 15794997 intron,intron Zasp52 -,tun + chr2R_22_15790001 chr2R_15790001 RAL-819 1290 chr2R 15821889 15821909 chr2R 15822000 15822021 22 112 3.5 0.5 2.0 7.3 132 chr2R 15821889 intron tun + chr2R 15821955 intron tun + chr2R 15822021 intron tun + chr2R_22_15820001 chr2R_15820001 RAL-819 1291 chr2R 15848310 15848343 chr2R 15848412 15848445 14 101 4.5 0.5 2.5 4.0 135 chr2R 15848310 intron tun + chr2R 15848378 intron tun + chr2R 15848445 intron tun + chr2R_14_15845001 chr2R_15845001 RAL-819 1292 chr2R 15891792 15891836 chr2R 15891893 15891937 18 99 10.0 12.0 11.0 1.5 145 chr2R 15891792 intron sli - chr2R 15891864 intron sli - chr2R 15891937 intron sli - chr2R_18_15890001 chr2R_15890001 RAL-819 1293 chr2R 15895558 15895587 chr2R 15895665 15895684 20 105 17.5 5.5 11.5 1.6 126 chr2R 15895558 intron sli - chr2R 15895621 intron sli - chr2R 15895684 intron sli - chr2R_20_15895001 chr2R_15895001 RAL-819 1294 chr2R 15930355 15930388 chr2R 15930457 15930460 11 97 35.5 2.5 19.0 0.6 105 chr2R 15930355 intron bdg - chr2R 15930408 intron bdg - chr2R 15930460 intron bdg - chr2R_11_15930001 chr2R_15930001 RAL-819 1295 chr2R 16054927 16054962 chr2R 16055033 16055070 35 101 21.0 17.5 19.2 1.7 143 chr2R 16054927 intron CG8405 + chr2R 16054998 intron CG8405 + chr2R 16055070 intron CG8405 + chr2R_35_16050001 chr2R_16050001 RAL-819 1296 chr2R 16061713 16061716 chr2R 16064360 16064374 Burdock 4 2654 28.0 13.0 20.5 0.2 2661 chr2R 16061713 intergenic not near genes chr2R 16063044 intergenic not near genes chr2R 16064374 intergenic not near genes chr2R_4_16060001 chr2R_16060001 RAL-819 1297 chr2R 16096165 16096194 chr2R 16096271 16096300 12 106 1.5 15.5 8.5 1.3 135 chr2R 16096165 intron Dg - chr2R 16096232 intron Dg - chr2R 16096300 intron Dg - chr2R_12_16095001 chr2R_16095001 RAL-819 1298 chr2R 16352821 16352867 chr2R 16352926 16352969 23 107 13.0 0.0 6.5 3.1 148 chr2R 16352821 intergenic not near genes chr2R 16352895 intergenic not near genes chr2R 16352969 intergenic not near genes chr2R_23_16350001 chr2R_16350001 RAL-819 1299 chr2R 16380099 16380149 chr2R 16380221 16380265 43 120 16.5 8.5 12.5 3.2 166 chr2R 16380099 5` UTR,3` UTR CR45316 +,CR45317 - chr2R 16380182 3` UTR CR45317 - chr2R 16380265 intergenic CR45317 -,CR45316 +,CG43187 + chr2R_43_16380001 chr2R_16380001 RAL-819 1300 chr2R 16426183 16426217 chr2R 16426289 16426324 32 106 0.0 21.0 10.5 2.8 141 chr2R 16426183 intron Sema-2b + chr2R 16426254 intron Sema-2b + chr2R 16426324 intron Sema-2b + chr2R_32_16425001 chr2R_16425001 RAL-819 1301 chr2R 16429261 16429269 chr2R 16429334 16429352 6 86 15.5 11.0 13.2 0.4 91 chr2R 16429261 intron Sema-2b + chr2R 16429306 intron Sema-2b + chr2R 16429352 intron Sema-2b + chr2R_6_16425001 chr2R_16425001 RAL-819 1302 chr2R 16429271 16429284 chr2R 16429328 16429385 16 83 12.5 9.5 11.0 1.3 114 chr2R 16429271 intron Sema-2b + chr2R 16429328 intron Sema-2b + chr2R 16429385 intron Sema-2b + chr2R_16_16425001 chr2R_16425001 RAL-819 1303 chr2R 16539625 16539635 chr2R 16544856 16544866 copia 6 5231 29.0 0.0 14.5 0.4 5241 chr2R 16539625 intergenic not near genes chr2R 16542246 intergenic not near genes chr2R 16544866 intergenic not near genes chr2R_6_16540001 chr2R_16540001 RAL-819 1304 chr2R 16552025 16552027 chr2R 16552139 16552141 5 114 29.5 13.0 21.2 0.2 116 chr2R 16552025 intergenic Syn2 + chr2R 16552083 intergenic Syn2 + chr2R 16552141 intergenic Syn2 + chr2R_5_16550001 chr2R_16550001 RAL-819 1305 chr2R 16552028 16552079 chr2R 16552137 16552193 37 110 13.5 11.0 12.2 2.8 165 chr2R 16552028 intergenic Syn2 + chr2R 16552110 intergenic Syn2 + chr2R 16552193 intergenic Syn2 + chr2R_37_16550001 chr2R_16550001 RAL-819 1306 chr2R 16613960 16614005 chr2R 16614148 16614178 32 195 0.5 9.0 4.8 5.5 218 chr2R 16613960 intron CG5065 + chr2R 16614069 intron CG5065 + chr2R 16614178 intron CG5065 + chr2R_32_16610001 chr2R_16610001 RAL-819 1307 chr2R 16617060 16617090 chr2R 16617164 16617195 20 103 13.5 20.5 17.0 1.1 135 chr2R 16617060 intron CG5065 + chr2R 16617128 intron CG5065 + chr2R 16617195 intron CG5065 + chr2R_20_16615001 chr2R_16615001 RAL-819 1308 chr2R 16619950 16620002 chr2R 16620056 16620058 34 104 7.5 0.0 3.8 7.1 108 chr2R 16619950 intron CG5065 + chr2R 16620004 intron CG5065 + chr2R 16620058 intron CG5065 + chr2R_34_16620001 chr2R_16620001 RAL-819 1309 chr2R 16659536 16659590 chr2R 16659647 16659706 54 114 14.0 11.5 12.8 3.9 170 chr2R 16659536 intron Picot - chr2R 16659621 intron Picot - chr2R 16659706 intron Picot - chr2R_54_16655001 chr2R_16655001 RAL-819 1310 chr2R 16708963 16709022 chr2R 16709084 16709143 44 119 10.0 9.0 9.5 4.2 180 chr2R 16708963 intron CG30463 - chr2R 16709053 intron CG30463 - chr2R 16709143 intron CG30463 - chr2R_44_16705001 chr2R_16705001 RAL-819 1311 chr2R 16713054 16713066 chr2R 16713163 16713173 11 109 0.0 21.0 10.5 1.0 119 chr2R 16713054 intron CG30463 - chr2R 16713114 intron CG30463 - chr2R 16713173 intron CG30463 - chr2R_11_16710001 chr2R_16710001 RAL-819 1312 chr2R 16714516 16714572 chr2R 16714620 16714676 31 103 9.5 4.0 6.8 4.0 160 chr2R 16714516 intron CG30463 - chr2R 16714596 intron CG30463 - chr2R 16714676 intron CG30463 - chr2R_31_16710001 chr2R_16710001 RAL-819 1313 chr2R 16726647 16726679 chr2R 16726771 16726803 25 124 17.5 14.0 15.8 1.5 156 chr2R 16726647 intron CG30463 - chr2R 16726725 intron CG30463 - chr2R 16726803 intron CG30463 - chr2R_25_16725001 chr2R_16725001 RAL-819 1314 chr2R 16732838 16732881 chr2R 16733033 16733076 40 193 11.0 14.5 12.8 2.9 238 chr2R 16732838 5` UTR CG30463 - chr2R 16732957 intergenic CG30463 - chr2R 16733076 intergenic CG30463 - chr2R_40_16730001 chr2R_16730001 RAL-819 1315 chr2R 16737114 16737166 chr2R 16737239 16737291 44 121 12.0 10.0 11.0 3.7 177 chr2R 16737114 3` UTR CG43104 - chr2R 16737202 3` UTR CG43104 - chr2R 16737291 exon CG43104 - chr2R_44_16735001 chr2R_16735001 RAL-819 1316 chr2R 16739420 16739467 chr2R 16739530 16739570 8 108 7.5 0.0 3.8 1.7 150 chr2R 16739420 intergenic not near genes chr2R 16739495 intergenic not near genes chr2R 16739570 intergenic not near genes chr2R_8_16735001 chr2R_16735001 RAL-819 1317 chr2R 16775618 16775676 chr2R 16775906 16775965 51 287 18.0 10.0 14.0 3.4 347 chr2R 16775618 3` UTR Arp53D + chr2R 16775792 intergenic Arp53D + chr2R 16775965 intergenic Arp53D + chr2R_51_16775001 chr2R_16775001 RAL-819 1318 chr2R 16978381 16978428 chr2R 16978485 16978532 29 102 8.0 8.0 8.0 3.2 151 chr2R 16978381 intron Cbp53E + chr2R 16978456 intron Cbp53E + chr2R 16978532 intron Cbp53E + chr2R_29_16975001 chr2R_16975001 RAL-819 1319 chr2R 16981945 16981964 chr2R 16982083 16982095 5 137 23.0 0.5 11.8 0.4 150 chr2R 16981945 intron Cbp53E + chr2R 16982020 intron Cbp53E + chr2R 16982095 intron Cbp53E + chr2R_5_16980001 chr2R_16980001 RAL-819 1320 chr2R 16981965 16982095 chr2R 16982078 16982198 13 122 0.5 0.0 0.2 10.8 233 chr2R 16981965 intron Cbp53E + chr2R 16982082 intron Cbp53E + chr2R 16982198 intron Cbp53E + chr2R_13_16980001 chr2R_16980001 RAL-819 1321 chr2R 17098638 17098658 chr2R 17098752 17098772 18 112 29.5 23.5 26.5 0.7 134 chr2R 17098638 intergenic GstS1 - chr2R 17098705 intergenic GstS1 - chr2R 17098772 intergenic GstS1 - chr2R_18_17095001 chr2R_17095001 RAL-819 1322 chr2R 17100739 17100793 chr2R 17100840 17100894 39 100 10.0 10.0 10.0 3.5 155 chr2R 17100739 intron CG30456 + chr2R 17100816 intron CG30456 + chr2R 17100894 intron CG30456 + chr2R_39_17100001 chr2R_17100001 RAL-819 1323 chr2R 17147219 17147264 chr2R 17152275 17152320 jockey 36 5055 19.0 20.0 19.5 1.8 5101 chr2R 17147219 intergenic not near genes chr2R 17149770 intergenic not near genes chr2R 17152320 intergenic not near genes chr2R_36_17145001 chr2R_17145001 RAL-819 1324 chr2R 17161330 17161362 chr2R 17161562 17161579 19 227 14.0 0.0 7.0 2.4 249 chr2R 17161330 intergenic not near genes chr2R 17161454 intergenic not near genes chr2R 17161579 intergenic not near genes chr2R_19_17160001 chr2R_17160001 RAL-819 1325 chr2R 17176382 17176387 chr2R 17182597 17182602 diver 5 6215 0.0 25.0 12.5 0.4 6220 chr2R 17176382 intergenic not near genes chr2R 17179492 intergenic not near genes chr2R 17182602 intergenic not near genes chr2R_5_17175001 chr2R_17175001 RAL-819 1326 chr2R 17183424 17183460 chr2R 17183527 17183578 15 106 12.0 0.0 6.0 2.1 154 chr2R 17183424 intergenic not near genes chr2R 17183501 intergenic not near genes chr2R 17183578 intergenic not near genes chr2R_15_17180001 chr2R_17180001 RAL-819 1327 chr2R 17236485 17236536 chr2R 17241713 17241757 copia 30 5226 13.0 16.0 14.5 1.9 5272 chr2R 17236485 intron mbl + chr2R 17239121 intron mbl + chr2R 17241757 intron mbl + chr2R_30_17235001 chr2R_17235001 RAL-819 1328 chr2R 17249873 17249876 chr2R 21582990 21582993 4 4333117 49.5 28.5 39.0 0.1 4333120 chr2R 17249873 intron mbl + chr2R 19416433 intron hts - chr2R 21582993 intergenic CG30222 + chr2R_4_19415001 chr2R_19415001 RAL-819 1329 chr2R 17254975 17255025 chr2R 17255088 17255132 40 112 14.0 13.5 13.8 2.7 157 chr2R 17254975 intron,3` UTR mbl +,CR43660 - chr2R 17255054 intron,3` UTR mbl +,CR43660 - chr2R 17255132 intron mbl + chr2R_40_17255001 chr2R_17255001 RAL-819 1330 chr2R 17485891 17485953 chr2R 17490678 17490738 F-element 43 4783 8.5 10.0 9.2 4.2 4847 chr2R 17485891 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488314 intron NT5E-2 + chr2R 17490738 intron NT5E-2 + chr2R_43_17485001 chr2R_17485001 RAL-819 1331 chr2R 17782338 17782393 chr2R 17783564 17783621 pogo 42 1228 11.0 4.5 7.8 4.8 1283 chr2R 17782338 intergenic CG33981 -,fab1 - chr2R 17782980 intergenic not near genes chr2R 17783621 intergenic mir-31a - chr2R_42_17780001 chr2R_17780001 RAL-819 1332 chr2R 17784006 17784009 chr2R 17784270 17784273 pogo 5 264 30.5 13.5 22.0 0.2 267 chr2R 17784006 intergenic mir-31a - chr2R 17784140 intergenic mir-31a - chr2R 17784273 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-819 1333 chr2R 17784010 17784023 chr2R 17784268 17784286 pogo 13 261 27.5 11.5 19.5 0.6 276 chr2R 17784010 intergenic mir-31a - chr2R 17784148 intergenic mir-31a - chr2R 17784286 intergenic mir-31a - chr2R_13_17780001 chr2R_17780001 RAL-819 1334 chr2R 17784024 17784054 chr2R 17784265 17784320 pogo 24 260 12.0 10.5 11.2 2.0 296 chr2R 17784024 intergenic mir-31a - chr2R 17784172 intergenic mir-31a - chr2R 17784320 intergenic mir-31a - chr2R_24_17780001 chr2R_17780001 RAL-819 1335 chr2R 17843184 17843239 chr2R 17843297 17843352 10 112 0.0 8.0 4.0 2.0 168 chr2R 17843184 intergenic olf186-F + chr2R 17843268 intergenic olf186-F + chr2R 17843352 intergenic olf186-F + chr2R_10_17840001 chr2R_17840001 RAL-819 1336 chr2R 17898722 17898757 chr2R 17898836 17898865 17 113 14.0 14.5 14.2 1.1 143 chr2R 17898722 intron Elk + chr2R 17898794 intron Elk + chr2R 17898865 intron Elk + chr2R_17_17895001 chr2R_17895001 RAL-819 1337 chr2R 17918143 17918163 chr2R 17918245 17918259 11 100 30.5 2.0 16.2 0.6 116 chr2R 17918143 intron Elk + chr2R 17918201 intron Elk + chr2R 17918259 intron Elk + chr2R_11_17915001 chr2R_17915001 RAL-819 1338 chr2R 17918164 17918194 chr2R 17918237 17918276 23 88 16.0 6.5 11.2 1.9 112 chr2R 17918164 intron Elk + chr2R 17918220 intron Elk + chr2R 17918276 intron Elk + chr2R_23_17915001 chr2R_17915001 RAL-819 1339 chr2R 17921416 17921469 chr2R 17921523 17921576 19 107 6.0 8.0 7.0 2.4 160 chr2R 17921416 intron Elk + chr2R 17921496 intron Elk + chr2R 17921576 intron Elk + chr2R_19_17920001 chr2R_17920001 RAL-819 1340 chr2R 17982899 17982953 chr2R 17983009 17983063 34 107 10.5 11.5 11.0 2.8 164 chr2R 17982899 intron dpr13 - chr2R 17982981 intron dpr13 - chr2R 17983063 intron dpr13 - chr2R_34_17980001 chr2R_17980001 RAL-819 1341 chr2R 17991286 17991343 chr2R 17991397 17991416 51 109 12.5 20.5 16.5 2.9 130 chr2R 17991286 intron dpr13 - chr2R 17991351 intron dpr13 - chr2R 17991416 intron dpr13 - chr2R_51_17990001 chr2R_17990001 RAL-819 1342 chr2R 18023139 18023195 chr2R 18023250 18023306 51 108 19.0 17.5 18.2 2.7 167 chr2R 18023139 intergenic not near genes chr2R 18023222 intergenic not near genes chr2R 18023306 intergenic not near genes chr2R_51_18020001 chr2R_18020001 RAL-819 1343 chr2R 18045649 18045700 chr2R 18046026 18046077 jockey 44 377 11.0 14.0 12.5 3.3 428 chr2R 18045649 intergenic not near genes chr2R 18045863 intergenic not near genes chr2R 18046077 intergenic CG5767 - chr2R_44_18045001 chr2R_18045001 RAL-819 1344 chr2R 18089170 18089227 chr2R 18089308 18089362 14 130 0.5 8.5 4.5 2.5 192 chr2R 18089170 intron CG34386 + chr2R 18089266 intron CG34386 + chr2R 18089362 intron CG34386 + chr2R_14_18085001 chr2R_18085001 RAL-819 1345 chr2R 18111667 18111714 chr2R 18115560 18115607 F-element 32 3893 14.0 13.0 13.5 2.2 3940 chr2R 18111667 intergenic not near genes chr2R 18113637 intergenic not near genes chr2R 18115607 intergenic not near genes chr2R_32_18110001 chr2R_18110001 RAL-819 1346 chr2R 18144854 18144876 chr2R 18144968 18144971 5 123 81.0 65.0 73.0 0.1 117 chr2R 18144854 exon pAbp + chr2R 18144912 intron pAbp + chr2R 18144971 exon pAbp + chr2R_5_18140001 chr2R_18140001 RAL-819 1347 chr2R 18308262 18308293 chr2R 18308389 18308424 17 130 19.5 7.0 13.2 1.2 162 chr2R 18308262 intron sbb - chr2R 18308343 intron sbb - chr2R 18308424 intron sbb - chr2R_17_18305001 chr2R_18305001 RAL-819 1348 chr2R 18358372 18358377 chr2R 18372608 18372614 roo 6 14236 33.5 0.5 17.0 0.3 14242 chr2R 18358372 intergenic not near genes chr2R 18365493 intergenic not near genes chr2R 18372614 intergenic not near genes chr2R_6_18365001 chr2R_18365001 RAL-819 1349 chr2R 18358379 18358415 chr2R 18372606 18372633 roo 15 14235 25.0 0.5 12.8 1.1 14254 chr2R 18358379 intergenic not near genes chr2R 18365506 intergenic not near genes chr2R 18372633 intergenic not near genes chr2R_15_18365001 chr2R_18365001 RAL-819 1350 chr2R 18376719 18376736 chr2R 18376829 18376851 14 114 13.5 15.5 14.5 0.9 132 chr2R 18376719 intergenic not near genes chr2R 18376785 intergenic not near genes chr2R 18376851 intergenic not near genes chr2R_14_18375001 chr2R_18375001 RAL-819 1351 chr2R 18376739 18376761 chr2R 18376819 18376858 14 110 7.5 13.0 10.2 1.2 119 chr2R 18376739 intergenic not near genes chr2R 18376798 intergenic not near genes chr2R 18376858 intergenic not near genes chr2R_14_18375001 chr2R_18375001 RAL-819 1352 chr2R 18390843 18390901 chr2R 18390955 18391013 19 112 6.5 5.0 5.8 2.8 170 chr2R 18390843 intergenic CG15068 - chr2R 18390928 intergenic CG15068 - chr2R 18391013 intergenic CG15068 - chr2R_19_18390001 chr2R_18390001 RAL-819 1353 chr2R 18402911 18402966 chr2R 18403014 18403070 21 103 26.0 12.0 19.0 1.1 159 chr2R 18402911 intergenic GstE4 + chr2R 18402990 intergenic GstE4 + chr2R 18403070 intergenic GstE4 + chr2R_21_18400001 chr2R_18400001 RAL-819 1354 chr2R 18405726 18405787 chr2R 18405832 18405892 37 104 11.5 0.5 6.0 5.3 166 chr2R 18405726 intergenic GstE6 +,GstE5 + chr2R 18405809 intergenic GstE6 +,GstE5 + chr2R 18405892 intergenic GstE6 + chr2R_37_18405001 chr2R_18405001 RAL-819 1355 chr2R 18401794 18401827 chr2R 18408589 18408602 12 6777 93.0 40.0 66.5 0.2 6808 chr2R 18401794 intergenic GstE3 + chr2R 18405198 exon GstE5 + chr2R 18408602 3` UTR GstE8 + chr2R_12_18405001 chr2R_18405001 RAL-819 1356 chr2R 18412504 18412560 chr2R 18412609 18412663 35 100 13.5 13.5 13.5 2.4 159 chr2R 18412504 intron,intron imd -,Dp1 + chr2R 18412584 intron,intron imd -,Dp1 + chr2R 18412663 intron,intron imd -,Dp1 + chr2R_35_18410001 chr2R_18410001 RAL-819 1357 chr2R 18463672 18463691 chr2R 18463798 18463817 16 125 13.5 10.0 11.8 1.2 145 chr2R 18463672 intron CG30116 - chr2R 18463744 intron CG30116 - chr2R 18463817 intron CG30116 - chr2R_16_18460001 chr2R_18460001 RAL-819 1358 chr2R 18480435 18480485 chr2R 18480567 18480617 12 132 0.0 0.0 0.0 12.0 182 chr2R 18480435 intron CG30116 - chr2R 18480526 intron CG30116 - chr2R 18480617 intron CG30116 - chr2R_12_18480001 chr2R_18480001 RAL-819 1359 chr2R 18486821 18486832 chr2R 18487108 18487110 4 285 23.5 10.5 17.0 0.2 289 chr2R 18486821 intron CG30116 - chr2R 18486966 intron CG30116 - chr2R 18487110 intron CG30116 - chr2R_4_18485001 chr2R_18485001 RAL-819 1360 chr2R 18486835 18486880 chr2R 18487107 18487167 48 279 8.5 10.0 9.2 4.7 332 chr2R 18486835 intron CG30116 - chr2R 18487001 intron CG30116 - chr2R 18487167 intron CG30116 - chr2R_48_18485001 chr2R_18485001 RAL-819 1361 chr2R 18487813 18487852 chr2R 18495289 18495347 blood 16 7478 2.0 6.5 4.2 3.1 7534 chr2R 18487813 intron CG30116 - chr2R 18491580 intron CG30116 - chr2R 18495347 intron CG30116 - chr2R_16_18490001 chr2R_18490001 RAL-819 1362 chr2R 18526880 18526940 chr2R 18526996 18527054 16 116 9.5 1.5 5.5 2.5 174 chr2R 18526880 intergenic CG43066 + chr2R 18526967 intergenic CG10924 + chr2R 18527054 intergenic CG10924 + chr2R_16_18525001 chr2R_18525001 RAL-819 1363 chr2R 18575770 18575828 chr2R 18581983 18582041 3S18 70 6203 7.0 13.5 10.2 6.2 6271 chr2R 18575770 intron GEFmeso - chr2R 18578906 intron GEFmeso - chr2R 18582041 intron GEFmeso - chr2R_70_18575001 chr2R_18575001 RAL-819 1364 chr2R 18585779 18585818 chr2R 18585882 18585921 41 99 23.0 10.0 16.5 2.3 142 chr2R 18585779 intron GEFmeso - chr2R 18585850 intron GEFmeso - chr2R 18585921 intron GEFmeso - chr2R_41_18585001 chr2R_18585001 RAL-819 1365 chr2R 18590841 18590898 chr2R 18600018 18600075 roo 47 9174 10.5 9.0 9.8 4.4 9234 chr2R 18590841 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600075 intron GEFmeso - chr2R_47_18595001 chr2R_18595001 RAL-819 1366 chr2R 18601109 18601164 chr2R 18601211 18601250 51 99 16.5 16.0 16.2 3.0 141 chr2R 18601109 intron GEFmeso - chr2R 18601180 intron GEFmeso - chr2R 18601250 intron GEFmeso - chr2R_51_18600001 chr2R_18600001 RAL-819 1367 chr2R 18646378 18646437 chr2R 18646548 18646607 38 167 12.5 13.0 12.8 2.8 229 chr2R 18646378 intron SP2637 - chr2R 18646492 intron SP2637 - chr2R 18646607 intron SP2637 - chr2R_38_18645001 chr2R_18645001 RAL-819 1368 chr2R 18713216 18713272 chr2R 18713318 18713370 42 102 10.5 13.0 11.8 3.3 154 chr2R 18713216 intergenic not near genes chr2R 18713293 intergenic not near genes chr2R 18713370 intergenic not near genes chr2R_42_18710001 chr2R_18710001 RAL-819 1369 chr2R 18745051 18745106 chr2R 18745181 18745236 35 128 7.5 18.0 12.8 2.5 185 chr2R 18745051 intron Hs3st-A + chr2R 18745144 intron Hs3st-A + chr2R 18745236 intron Hs3st-A + chr2R_35_18745001 chr2R_18745001 RAL-819 1370 chr2R 18769607 18769617 chr2R 18769739 18769748 11 132 37.0 32.0 34.5 0.3 141 chr2R 18769607 intron Mctp + chr2R 18769678 intron Mctp + chr2R 18769748 intron Mctp + chr2R_11_18765001 chr2R_18765001 RAL-819 1371 chr2R 18808060 18808063 chr2R 18808174 18808177 5 114 0.5 0.5 0.5 3.3 117 chr2R 18808060 intergenic CG15096 - chr2R 18808118 intergenic CG15096 - chr2R 18808177 intergenic CG15096 - chr2R_5_18805001 chr2R_18805001 RAL-819 1372 chr2R 18808065 18808073 chr2R 18808154 18808187 7 110 0.5 0.5 0.5 4.7 122 chr2R 18808065 intergenic CG15096 - chr2R 18808126 intergenic CG15096 - chr2R 18808187 intergenic CG15096 - chr2R_7_18805001 chr2R_18805001 RAL-819 1373 chr2R 18812509 18812514 chr2R 18812673 18812695 6 177 15.5 13.5 14.5 0.4 186 chr2R 18812509 intron CG15096 - chr2R 18812602 intron CG15096 - chr2R 18812695 intron CG15096 - chr2R_6_18810001 chr2R_18810001 RAL-819 1374 chr2R 18819015 18819068 chr2R 18819118 18819147 22 98 5.5 2.5 4.0 4.4 132 chr2R 18819015 intergenic Phb2 + chr2R 18819081 intergenic Phb2 + chr2R 18819147 intergenic Phb2 + chr2R_22_18815001 chr2R_18815001 RAL-819 1375 chr2R 18862289 18862408 chr2R 18862401 18862518 17 114 0.5 0.5 0.5 11.3 229 chr2R 18862289 intergenic Jheh3 - chr2R 18862404 intergenic Jheh3 -,CG43069 + chr2R 18862518 intergenic CG43069 +,Jheh3 - chr2R_17_18860001 chr2R_18860001 RAL-819 1376 chr2R 18871621 18871680 chr2R 18871731 18871783 41 105 17.0 9.0 13.0 2.9 162 chr2R 18871621 intergenic not near genes chr2R 18871702 intergenic not near genes chr2R 18871783 intergenic not near genes chr2R_41_18870001 chr2R_18870001 RAL-819 1377 chr2R 18924260 18924297 chr2R 18924358 18924402 30 103 11.5 14.5 13.0 2.1 142 chr2R 18924260 intron sano + chr2R 18924331 intron sano + chr2R 18924402 intron sano + chr2R_30_18920001 chr2R_18920001 RAL-819 1378 chr2R 18926479 18926530 chr2R 18926591 18926642 29 109 11.5 11.0 11.2 2.4 163 chr2R 18926479 intron sano + chr2R 18926560 intron sano + chr2R 18926642 intron sano + chr2R_29_18925001 chr2R_18925001 RAL-819 1379 chr2R 18964893 18964953 chr2R 18964994 18965054 33 101 12.0 12.0 12.0 2.5 161 chr2R 18964893 intergenic not near genes chr2R 18964974 intergenic not near genes chr2R 18965054 intergenic not near genes chr2R_33_18960001 chr2R_18960001 RAL-819 1380 chr2R 18992001 18992047 chr2R 18992160 18992213 36 164 8.5 8.0 8.2 3.9 212 chr2R 18992001 intron tn + chr2R 18992107 intron tn + chr2R 18992213 intron tn + chr2R_36_18990001 chr2R_18990001 RAL-819 1381 chr2R 19007078 19007113 chr2R 19007203 19007238 17 121 27.0 14.0 20.5 0.8 160 chr2R 19007078 intron tn + chr2R 19007158 intron tn + chr2R 19007238 intron tn + chr2R_17_19005001 chr2R_19005001 RAL-819 1382 chr2R 19007114 19007135 chr2R 19007202 19007250 18 113 18.0 13.5 15.8 1.1 136 chr2R 19007114 intron tn + chr2R 19007182 intron tn + chr2R 19007250 intron tn + chr2R_18_19005001 chr2R_19005001 RAL-819 1383 chr2R 19012920 19012967 chr2R 19013037 19013070 42 115 13.5 16.5 15.0 2.6 150 chr2R 19012920 intergenic not near genes chr2R 19012995 intergenic not near genes chr2R 19013070 intergenic not near genes chr2R_42_19010001 chr2R_19010001 RAL-819 1384 chr2R 19025284 19025333 chr2R 19025543 19025582 31 254 1.5 13.5 7.5 3.6 298 chr2R 19025284 intron 5-HT1B - chr2R 19025433 intron 5-HT1B - chr2R 19025582 intron 5-HT1B - chr2R_31_19025001 chr2R_19025001 RAL-819 1385 chr2R 19026027 19026060 chr2R 19026153 19026186 8 126 13.0 0.5 6.8 1.0 159 chr2R 19026027 intron 5-HT1B - chr2R 19026106 intron 5-HT1B - chr2R 19026186 intron 5-HT1B - chr2R_8_19025001 chr2R_19025001 RAL-819 1386 chr2R 19042680 19042698 chr2R 19042779 19042802 18 101 37.0 40.0 38.5 0.5 122 chr2R 19042680 intergenic not near genes chr2R 19042741 intergenic not near genes chr2R 19042802 intergenic not near genes chr2R_18_19040001 chr2R_19040001 RAL-819 1387 chr2R 19048284 19048337 chr2R 19048406 19048458 33 121 1.0 13.0 7.0 4.1 174 chr2R 19048284 intergenic not near genes chr2R 19048371 intergenic not near genes chr2R 19048458 intergenic not near genes chr2R_33_19045001 chr2R_19045001 RAL-819 1388 chr2R 19067698 19067747 chr2R 19067799 19067848 41 100 14.0 9.5 11.8 3.2 150 chr2R 19067698 intron 5-HT1A + chr2R 19067773 intron 5-HT1A + chr2R 19067848 intron 5-HT1A + chr2R_41_19065001 chr2R_19065001 RAL-819 1389 chr2R 19072083 19072139 chr2R 19072184 19072240 45 97 18.0 26.5 22.2 1.9 157 chr2R 19072083 intron 5-HT1A + chr2R 19072162 intron 5-HT1A + chr2R 19072240 intron 5-HT1A + chr2R_45_19070001 chr2R_19070001 RAL-819 1390 chr2R 19103413 19103429 chr2R 19103520 19103536 16 106 10.5 12.0 11.2 1.3 123 chr2R 19103413 intron 5-HT1A + chr2R 19103474 intron 5-HT1A + chr2R 19103536 intron 5-HT1A + chr2R_16_19100001 chr2R_19100001 RAL-819 1391 chr2R 19169512 19169568 chr2R 19169727 19169783 39 213 14.0 11.5 12.8 2.8 271 chr2R 19169512 intron CG10737 + chr2R 19169648 intron CG10737 + chr2R 19169783 intron CG10737 + chr2R_39_19165001 chr2R_19165001 RAL-819 1392 chr2R 19203322 19203335 chr2R 19203713 19203731 15 392 48.0 97.5 72.8 0.2 409 chr2R 19203322 intron hppy + chr2R 19203526 intron hppy + chr2R 19203731 intron hppy + chr2R_15_19200001 chr2R_19200001 RAL-819 1393 chr2R 19203321 19203360 chr2R 19203732 19203751 13 395 71.0 90.0 80.5 0.2 430 chr2R 19203321 intron hppy + chr2R 19203536 intron hppy + chr2R 19203751 intron hppy + chr2R_13_19200001 chr2R_19200001 RAL-819 1394 chr2R 19244452 19244471 chr2R 19244556 19244575 14 104 0.0 19.0 9.5 1.3 123 chr2R 19244452 intergenic not near genes chr2R 19244514 intergenic not near genes chr2R 19244575 intergenic not near genes chr2R_14_19240001 chr2R_19240001 RAL-819 1395 chr2R 19300937 19300993 chr2R 19301044 19301101 65 105 5.0 6.5 5.8 9.6 164 chr2R 19300937 intron Tab2 + chr2R 19301019 intron Tab2 + chr2R 19301101 intron Tab2 + chr2R_65_19300001 chr2R_19300001 RAL-819 1396 chr2R 19373731 19373786 chr2R 19373838 19373880 45 102 20.0 18.5 19.2 2.2 149 chr2R 19373731 intergenic CG9416 - chr2R 19373806 intergenic CG9416 - chr2R 19373880 intergenic CG9416 - chr2R_45_19370001 chr2R_19370001 RAL-819 1397 chr2R 19466569 19466623 chr2R 19466688 19466742 29 115 10.5 10.0 10.2 2.6 173 chr2R 19466569 intron par-1 + chr2R 19466656 intron par-1 + chr2R 19466742 intron par-1 + chr2R_29_19465001 chr2R_19465001 RAL-819 1398 chr2R 19498449 19498456 chr2R 19498551 19498558 7 102 6.5 15.5 11.0 0.6 109 chr2R 19498449 intron CG15120 + chr2R 19498504 intron CG15120 + chr2R 19498558 intron CG15120 + chr2R_7_19495001 chr2R_19495001 RAL-819 1399 chr2R 19498457 19498503 chr2R 19498549 19498605 25 100 2.0 14.0 8.0 2.8 148 chr2R 19498457 intron CG15120 + chr2R 19498531 intron CG15120 + chr2R 19498605 intron CG15120 + chr2R_25_19495001 chr2R_19495001 RAL-819 1400 chr2R 19536441 19536500 chr2R 19536548 19536607 59 106 9.0 10.0 9.5 5.6 166 chr2R 19536441 intron sm - chr2R 19536524 intron sm - chr2R 19536607 intron sm - chr2R_59_19535001 chr2R_19535001 RAL-819 1401 chr2R 19588725 19588770 chr2R 19588828 19588873 27 102 19.0 9.5 14.2 1.8 148 chr2R 19588725 intron sm - chr2R 19588799 intron sm - chr2R 19588873 intron sm - chr2R_27_19585001 chr2R_19585001 RAL-819 1402 chr2R 19588773 19588781 chr2R 19588827 19588884 6 94 14.5 9.0 11.8 0.5 111 chr2R 19588773 intron sm - chr2R 19588828 intron sm - chr2R 19588884 intron sm - chr2R_6_19585001 chr2R_19585001 RAL-819 1403 chr2R 19680576 19680626 chr2R 19680679 19680721 33 103 8.0 5.0 6.5 4.4 145 chr2R 19680576 intergenic CG15127 - chr2R 19680648 intergenic CG15127 - chr2R 19680721 intergenic CG15127 - chr2R_33_19680001 chr2R_19680001 RAL-819 1404 chr2R 19699873 19699929 chr2R 19699983 19700038 21 110 5.0 10.0 7.5 2.5 165 chr2R 19699873 intergenic Obp56c - chr2R 19699956 intergenic Obp56c - chr2R 19700038 3` UTR Obp56c - chr2R_21_19695001 chr2R_19695001 RAL-819 1405 chr2R 19701498 19701543 chr2R 19701607 19701652 44 106 9.0 12.5 10.8 3.7 154 chr2R 19701498 intergenic Obp56c - chr2R 19701575 intergenic Obp56c - chr2R 19701652 intergenic not near genes chr2R_44_19700001 chr2R_19700001 RAL-819 1406 chr2R 19715831 19715850 chr2R 19723325 19723329 blood 17 7490 38.0 15.0 26.5 0.6 7498 chr2R 19715831 intergenic not near genes chr2R 19719580 intergenic not near genes chr2R 19723329 intergenic not near genes chr2R_17_19715001 chr2R_19715001 RAL-819 1407 chr2R 19715851 19715857 chr2R 19723324 19723351 blood 6 7490 35.0 14.0 24.5 0.2 7500 chr2R 19715851 intergenic not near genes chr2R 19719601 intergenic not near genes chr2R 19723351 intergenic not near genes chr2R_6_19715001 chr2R_19715001 RAL-819 1408 chr2R 19766563 19766602 chr2R 19766666 19766703 4 102 54.5 57.0 55.8 0.1 140 chr2R 19766563 intergenic not near genes chr2R 19766633 intergenic not near genes chr2R 19766703 intergenic not near genes chr2R_4_19765001 chr2R_19765001 RAL-819 1409 chr2R 19773986 19774038 chr2R 19774124 19774176 41 138 14.0 16.5 15.2 2.5 190 chr2R 19773986 intergenic not near genes chr2R 19774081 intergenic not near genes chr2R 19774176 intergenic not near genes chr2R_41_19770001 chr2R_19770001 RAL-819 1410 chr2R 19776571 19776629 chr2R 19779918 19779939 jockey 51 3344 14.5 14.5 14.5 3.3 3368 chr2R 19776571 intergenic not near genes chr2R 19778255 intergenic not near genes chr2R 19779939 intergenic not near genes chr2R_51_19775001 chr2R_19775001 RAL-819 1411 chr2R 19914824 19914878 chr2R 19922261 19922315 mdg1 18 7436 13.5 11.0 12.2 1.4 7491 chr2R 19914824 intergenic not near genes chr2R 19918570 intergenic not near genes chr2R 19922315 intergenic not near genes chr2R_18_19915001 chr2R_19915001 RAL-819 1412 chr2R 19957410 19957460 chr2R 19962632 19962687 copia 30 5224 14.0 13.5 13.8 2.0 5277 chr2R 19957410 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962687 intergenic not near genes chr2R_30_19960001 chr2R_19960001 RAL-819 1413 chr2R 20069208 20069255 chr2R 20071872 20071918 opus 39 2657 0.5 12.5 6.5 5.2 2710 chr2R 20069208 intergenic not near genes chr2R 20070563 intergenic not near genes chr2R 20071918 intergenic not near genes chr2R_39_20070001 chr2R_20070001 RAL-819 1414 chr2R 20080599 20080607 chr2R 20080701 20080709 9 101 0.0 26.0 13.0 0.6 110 chr2R 20080599 intergenic not near genes chr2R 20080654 intergenic not near genes chr2R 20080709 intergenic not near genes chr2R_9_20080001 chr2R_20080001 RAL-819 1415 chr2R 20080608 20080625 chr2R 20080695 20080727 7 100 0.0 22.0 11.0 0.6 119 chr2R 20080608 intergenic not near genes chr2R 20080668 intergenic not near genes chr2R 20080727 intergenic not near genes chr2R_7_20080001 chr2R_20080001 RAL-819 1416 chr2R 20095372 20095384 chr2R 20095512 20095524 4 138 34.5 14.0 24.2 0.2 152 chr2R 20095372 intergenic not near genes chr2R 20095448 intergenic not near genes chr2R 20095524 intergenic not near genes chr2R_4_20095001 chr2R_20095001 RAL-819 1417 chr2R 20095386 20095425 chr2R 20095511 20095545 46 132 14.5 14.0 14.2 3.0 159 chr2R 20095386 intergenic not near genes chr2R 20095466 intergenic not near genes chr2R 20095545 intergenic not near genes chr2R_46_20095001 chr2R_20095001 RAL-819 1418 chr2R 20125727 20125749 chr2R 20125824 20125850 16 99 9.5 20.5 15.0 1.0 123 chr2R 20125727 intergenic not near genes chr2R 20125788 intergenic not near genes chr2R 20125850 intergenic not near genes chr2R_16_20125001 chr2R_20125001 RAL-819 1419 chr2R 20226139 20226146 chr2R 20226253 20226260 7 114 24.0 0.0 12.0 0.5 121 chr2R 20226139 intergenic not near genes chr2R 20226200 intergenic not near genes chr2R 20226260 intergenic not near genes chr2R_7_20225001 chr2R_20225001 RAL-819 1420 chr2R 20227662 20227704 chr2R 20227771 20227823 27 115 15.0 22.5 18.8 1.4 161 chr2R 20227662 intergenic not near genes chr2R 20227742 intergenic not near genes chr2R 20227823 intergenic not near genes chr2R_27_20225001 chr2R_20225001 RAL-819 1421 chr2R 20227705 20227707 chr2R 20227770 20227823 12 106 13.0 21.5 17.2 0.7 118 chr2R 20227705 intergenic not near genes chr2R 20227764 intergenic not near genes chr2R 20227823 intergenic not near genes chr2R_12_20225001 chr2R_20225001 RAL-819 1422 chr2R 20368488 20368495 chr2R 20377677 20377684 roo 5 9189 34.0 14.5 24.2 0.2 9196 chr2R 20368488 intergenic not near genes chr2R 20373086 intergenic not near genes chr2R 20377684 intergenic not near genes chr2R_5_20370001 chr2R_20370001 RAL-819 1423 chr2R 20395011 20395057 chr2R 20395198 20395245 22 197 19.0 0.0 9.5 2.1 234 chr2R 20395011 intergenic not near genes chr2R 20395128 intergenic not near genes chr2R 20395245 intergenic not near genes chr2R_22_20395001 chr2R_20395001 RAL-819 1424 chr2R 20405048 20405100 chr2R 20405159 20405211 54 110 14.0 11.5 12.8 3.9 163 chr2R 20405048 intergenic not near genes chr2R 20405130 intergenic not near genes chr2R 20405211 intergenic not near genes chr2R_54_20405001 chr2R_20405001 RAL-819 1425 chr2R 20434099 20434103 chr2R 20434197 20434207 7 102 0.0 25.0 12.5 0.5 108 chr2R 20434099 intron CG12484 + chr2R 20434153 intron CG12484 + chr2R 20434207 intron CG12484 + chr2R_7_20430001 chr2R_20430001 RAL-819 1426 chr2R 20480577 20480608 chr2R 20480676 20480720 18 114 0.5 31.0 15.8 1.1 143 chr2R 20480577 intergenic not near genes chr2R 20480648 intergenic not near genes chr2R 20480720 intergenic not near genes chr2R_18_20480001 chr2R_20480001 RAL-819 1427 chr2R 20506959 20506961 chr2R 20507060 20507062 4 101 0.0 11.0 5.5 0.6 103 chr2R 20506959 intergenic CR44645 + chr2R 20507010 intergenic CR44645 + chr2R 20507062 intergenic CR44645 + chr2R_4_20505001 chr2R_20505001 RAL-819 1428 chr2R 20519306 20519364 chr2R 20519569 20519628 27 264 10.5 11.0 10.8 2.3 322 chr2R 20519306 intergenic not near genes chr2R 20519467 intergenic not near genes chr2R 20519628 intergenic not near genes chr2R_27_20515001 chr2R_20515001 RAL-819 1429 chr2R 20541964 20542017 chr2R 20542067 20542120 34 103 13.0 13.5 13.2 2.4 156 chr2R 20541964 intergenic not near genes chr2R 20542042 intergenic not near genes chr2R 20542120 intergenic not near genes chr2R_34_20540001 chr2R_20540001 RAL-819 1430 chr2R 20555313 20555337 chr2R 20555416 20555426 5 103 18.0 8.0 13.0 0.4 113 chr2R 20555313 intergenic not near genes chr2R 20555370 intergenic not near genes chr2R 20555426 intergenic not near genes chr2R_5_20555001 chr2R_20555001 RAL-819 1431 chr2R 20572568 20572585 chr2R 20572683 20572700 16 114 9.0 21.5 15.2 1.0 132 chr2R 20572568 intron qsm - chr2R 20572634 intron qsm - chr2R 20572700 intron qsm - chr2R_16_20570001 chr2R_20570001 RAL-819 1432 chr2R 20590641 20590669 chr2R 20590745 20590772 11 104 16.0 10.0 13.0 0.8 131 chr2R 20590641 intron bl + chr2R 20590706 intron bl + chr2R 20590772 intron bl + chr2R_11_20590001 chr2R_20590001 RAL-819 1433 chr2R 20667344 20667346 chr2R 20667481 20667483 4 137 28.5 36.0 32.2 0.1 139 chr2R 20667344 intergenic Fem-1 -,exu - chr2R 20667414 intergenic exu -,Fem-1 - chr2R 20667483 3` UTR exu - chr2R_4_20665001 chr2R_20665001 RAL-819 1434 chr2R 20698080 20698133 chr2R 20698221 20698274 27 141 5.0 1.0 3.0 6.8 194 chr2R 20698080 intergenic dpr + chr2R 20698177 intergenic dpr + chr2R 20698274 intergenic dpr + chr2R_27_20695001 chr2R_20695001 RAL-819 1435 chr2R 20739417 20739476 chr2R 20744210 20744269 F-element 38 4792 10.0 13.0 11.5 3.0 4852 chr2R 20739417 intron dpr + chr2R 20741843 intron dpr + chr2R 20744269 intron dpr + chr2R_38_20740001 chr2R_20740001 RAL-819 1436 chr2R 20757447 20757458 chr2R 20757547 20757560 13 100 10.5 32.0 21.2 0.6 113 chr2R 20757447 intergenic not near genes chr2R 20757504 intergenic not near genes chr2R 20757560 intergenic not near genes chr2R_13_20755001 chr2R_20755001 RAL-819 1437 chr2R 20776998 20777015 chr2R 20777160 20777162 5 160 36.5 49.0 42.8 0.1 164 chr2R 20776998 exon CG43710 - chr2R 20777080 exon CG43710 - chr2R 20777162 exon CG43710 - chr2R_5_20775001 chr2R_20775001 RAL-819 1438 chr2R 20783286 20783329 chr2R 20788083 20788126 F-element 29 4795 13.5 17.5 15.5 1.8 4840 chr2R 20783286 intergenic not near genes chr2R 20785706 intergenic not near genes chr2R 20788126 intergenic CG43666 - chr2R_29_20785001 chr2R_20785001 RAL-819 1439 chr2R 20830517 20830570 chr2R 20830622 20830669 47 102 9.5 16.0 12.8 3.4 152 chr2R 20830517 intron,intron insc -,sktl - chr2R 20830593 intron,intron insc -,sktl - chr2R 20830669 intron,intron insc -,sktl - chr2R_47_20830001 chr2R_20830001 RAL-819 1440 chr2R 20862305 20862345 chr2R 20862424 20862464 34 116 16.5 21.5 19.0 1.7 159 chr2R 20862305 intergenic not near genes chr2R 20862384 intergenic not near genes chr2R 20862464 intergenic not near genes chr2R_34_20860001 chr2R_20860001 RAL-819 1441 chr2R 20886901 20886908 chr2R 20887003 20887010 7 102 14.0 31.0 22.5 0.3 109 chr2R 20886901 intron otp - chr2R 20886956 intron otp - chr2R 20887010 intron otp - chr2R_7_20885001 chr2R_20885001 RAL-819 1442 chr2R 21031737 21031777 chr2R 21031845 21031891 15 112 15.0 12.5 13.8 1.0 154 chr2R 21031737 intergenic not near genes chr2R 21031814 intergenic not near genes chr2R 21031891 intergenic not near genes chr2R_15_21030001 chr2R_21030001 RAL-819 1443 chr2R 21060609 21060655 chr2R 21060710 21060756 45 100 10.0 12.0 11.0 3.8 147 chr2R 21060609 intergenic CG15653 -,mRpL54 + chr2R 21060682 intergenic mRpL54 +,CG15653 - chr2R 21060756 intergenic mRpL54 +,CG15653 - chr2R_45_21060001 chr2R_21060001 RAL-819 1444 chr2R 21081143 21081188 chr2R 21081258 21081292 21 112 9.5 8.0 8.8 2.1 149 chr2R 21081143 intron Treh + chr2R 21081218 intron Treh + chr2R 21081292 intron Treh + chr2R_21_21080001 chr2R_21080001 RAL-819 1445 chr2R 21106083 21106089 chr2R 21106190 21106196 7 107 10.0 11.5 10.8 0.6 113 chr2R 21106083 intron ktub + chr2R 21106140 intron ktub + chr2R 21106196 intron ktub + chr2R_7_21105001 chr2R_21105001 RAL-819 1446 chr2R 21151095 21151121 chr2R 21153753 21153779 opus 23 2657 23.5 18.0 20.8 1.1 2684 chr2R 21151095 intron CG30389 - chr2R 21152437 intron CG30389 - chr2R 21153779 intron CG30389 - chr2R_23_21150001 chr2R_21150001 RAL-819 1447 chr2R 21151122 21151144 chr2R 21153749 21153802 opus 29 2656 13.0 17.5 15.2 1.8 2680 chr2R 21151122 intron CG30389 - chr2R 21152462 intron CG30389 - chr2R 21153802 intron CG30389 - chr2R_29_21150001 chr2R_21150001 RAL-819 1448 chr2R 21188203 21188241 chr2R 21188303 21188347 19 104 15.5 11.5 13.5 1.3 144 chr2R 21188203 exon tud + chr2R 21188275 intron tud + chr2R 21188347 intron tud + chr2R_19_21185001 chr2R_21185001 RAL-819 1449 chr2R 21188243 21188250 chr2R 21188298 21188356 9 99 10.0 9.5 9.8 0.8 113 chr2R 21188243 exon tud + chr2R 21188300 intron tud + chr2R 21188356 intron tud + chr2R_9_21185001 chr2R_21185001 RAL-819 1450 chr2R 21253657 21253706 chr2R 21253808 21253856 31 149 13.0 13.5 13.2 2.2 199 chr2R 21253657 intergenic not near genes chr2R 21253756 intergenic not near genes chr2R 21253856 intergenic not near genes chr2R_31_21250001 chr2R_21250001 RAL-819 1451 chr2R 21255467 21255468 chr2R 21255519 21255590 4 99 0.0 0.0 0.0 4.0 123 chr2R 21255467 5` UTR Rgk3 + chr2R 21255528 5` UTR Rgk3 + chr2R 21255590 5` UTR Rgk3 + chr2R_4_21255001 chr2R_21255001 RAL-819 1452 chr2R 21259649 21259665 chr2R 21259746 21259769 14 98 23.5 21.5 22.5 0.6 120 chr2R 21259649 intron Rgk3 + chr2R 21259709 intron Rgk3 + chr2R 21259769 intron Rgk3 + chr2R_14_21255001 chr2R_21255001 RAL-819 1453 chr2R 21285413 21285436 chr2R 21285510 21285538 15 101 24.0 20.5 22.2 0.6 125 chr2R 21285413 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285476 3` UTR,3` UTR MFS16 +,CG10505 - chr2R 21285538 3` UTR,3` UTR MFS16 +,CG10505 - chr2R_15_21285001 chr2R_21285001 RAL-819 1454 chr2R 21410053 21410112 chr2R 21410157 21410216 19 100 13.0 10.5 11.8 1.5 163 chr2R 21410053 intron Sdc - chr2R 21410134 intron Sdc - chr2R 21410216 intron Sdc - chr2R_19_21410001 chr2R_21410001 RAL-819 1455 chr2R 21417254 21417274 chr2R 21417380 21417389 8 124 10.0 0.5 5.2 1.3 135 chr2R 21417254 intron Sdc - chr2R 21417322 intron Sdc - chr2R 21417389 intron Sdc - chr2R_8_21415001 chr2R_21415001 RAL-819 1456 chr2R 21524300 21524318 chr2R 21524392 21524420 6 96 6.5 22.0 14.2 0.4 120 chr2R 21524300 intron Egfr + chr2R 21524360 intron Egfr + chr2R 21524420 intron Egfr + chr2R_6_21520001 chr2R_21520001 RAL-819 1457 chr2R 21592820 21592858 chr2R 21592928 21592946 15 99 22.0 25.5 23.8 0.6 126 chr2R 21592820 intergenic not near genes chr2R 21592883 intergenic not near genes chr2R 21592946 intergenic not near genes chr2R_15_21590001 chr2R_21590001 RAL-819 1458 chr2R 21660853 21660907 chr2R 21660971 21661025 34 116 15.0 10.5 12.8 2.5 172 chr2R 21660853 intergenic pirk - chr2R 21660939 intergenic pirk - chr2R 21661025 3` UTR pirk - chr2R_34_21660001 chr2R_21660001 RAL-819 1459 chr2R 21699892 21699903 chr2R 21700004 21700016 11 113 30.5 15.5 23.0 0.5 124 chr2R 21699892 intron HmgZ - chr2R 21699954 intron HmgZ - chr2R 21700016 intron HmgZ - chr2R_11_21695001 chr2R_21695001 RAL-819 1460 chr2R 21699904 21699944 chr2R 21700002 21700046 36 111 13.5 14.5 14.0 2.4 142 chr2R 21699904 intron HmgZ - chr2R 21699975 intron HmgZ - chr2R 21700046 intron HmgZ - chr2R_36_21695001 chr2R_21695001 RAL-819 1461 chr2R 21725207 21725221 chr2R 21725309 21725323 10 102 0.0 22.5 11.2 0.8 116 chr2R 21725207 intergenic not near genes chr2R 21725265 intergenic not near genes chr2R 21725323 intergenic not near genes chr2R_10_21725001 chr2R_21725001 RAL-819 1462 chr2R 21738252 21738266 chr2R 21747437 21747451 roo 13 9183 27.5 10.0 18.8 0.7 9199 chr2R 21738252 intergenic not near genes chr2R 21742852 intergenic not near genes chr2R 21747451 intergenic not near genes chr2R_13_21740001 chr2R_21740001 RAL-819 1463 chr2R 21738267 21738307 chr2R 21747436 21747492 roo 32 9171 9.5 9.5 9.5 3.0 9225 chr2R 21738267 intergenic not near genes chr2R 21742880 intergenic not near genes chr2R 21747492 intergenic not near genes chr2R_32_21740001 chr2R_21740001 RAL-819 1464 chr2R 21753060 21753117 chr2R 21753570 21753592 roo 50 507 10.0 15.5 12.8 3.6 532 chr2R 21753060 intergenic not near genes chr2R 21753326 intergenic not near genes chr2R 21753592 intergenic not near genes chr2R_50_21750001 chr2R_21750001 RAL-819 1465 chr2R 21774752 21774760 chr2R 22652309 22652332 12 877568 54.5 5.5 30.0 0.4 877580 chr2R 21774752 3` UTR CG4021 + chr2R 22213542 intron ari-2 + chr2R 22652332 3` UTR nsr + chr2R_12_22210001 chr2R_22210001 RAL-819 1466 chr2R 21809500 21809555 chr2R 21817765 21817820 roo 51 8264 15.5 15.5 15.5 3.1 8320 chr2R 21809500 intergenic not near genes chr2R 21813660 intergenic not near genes chr2R 21817820 intergenic not near genes chr2R_51_21810001 chr2R_21810001 RAL-819 1467 chr2R 21831121 21831126 chr2R 21831224 21831224 4 102 0.0 6.5 3.2 1.0 103 chr2R 21831121 intron CG13492 - chr2R 21831172 intron CG13492 - chr2R 21831224 intron CG13492 - chr2R_4_21830001 chr2R_21830001 RAL-819 1468 chr2R 21857320 21857372 chr2R 21857436 21857488 38 113 17.5 12.0 14.8 2.4 168 chr2R 21857320 intergenic not near genes chr2R 21857404 intergenic not near genes chr2R 21857488 intergenic not near genes chr2R_38_21855001 chr2R_21855001 RAL-819 1469 chr2R 21886111 21886140 chr2R 21886215 21886244 19 104 19.0 1.0 10.0 1.7 133 chr2R 21886111 intron Fili + chr2R 21886178 intron Fili + chr2R 21886244 intron Fili + chr2R_19_21885001 chr2R_21885001 RAL-819 1470 chr2R 21886145 21886168 chr2R 21886208 21886293 4 110 9.5 3.5 6.5 0.5 148 chr2R 21886145 intron Fili + chr2R 21886219 intron Fili + chr2R 21886293 intron Fili + chr2R_4_21885001 chr2R_21885001 RAL-819 1471 chr2R 21888290 21888322 chr2R 21888406 21888438 29 115 8.5 16.5 12.5 2.1 148 chr2R 21888290 intron Fili + chr2R 21888364 intron Fili + chr2R 21888438 intron Fili + chr2R_29_21885001 chr2R_21885001 RAL-819 1472 chr2R 21906244 21906303 chr2R 21906371 21906429 39 124 7.0 11.5 9.2 3.8 185 chr2R 21906244 intron Fili + chr2R 21906336 intron Fili + chr2R 21906429 intron Fili + chr2R_39_21905001 chr2R_21905001 RAL-819 1473 chr2R 21919847 21919903 chr2R 21919960 21920006 42 111 12.0 12.0 12.0 3.2 159 chr2R 21919847 intron Fili + chr2R 21919926 intron Fili + chr2R 21920006 intron Fili + chr2R_42_21915001 chr2R_21915001 RAL-819 1474 chr2R 21963171 21963217 chr2R 21963281 21963327 39 109 15.5 10.5 13.0 2.8 156 chr2R 21963171 intergenic not near genes chr2R 21963249 intergenic not near genes chr2R 21963327 intergenic not near genes chr2R_39_21960001 chr2R_21960001 RAL-819 1475 chr2R 21966525 21966535 chr2R 21966638 21966648 8 113 11.0 0.0 5.5 1.2 123 chr2R 21966525 intron ppk9 + chr2R 21966586 intron ppk9 + chr2R 21966648 intron ppk9 + chr2R_8_21965001 chr2R_21965001 RAL-819 1476 chr2R 22003066 22003122 chr2R 22003173 22003217 36 105 10.5 4.0 7.2 4.4 151 chr2R 22003066 intron CG34370 - chr2R 22003142 intron CG34370 - chr2R 22003217 intron CG34370 - chr2R_36_22000001 chr2R_22000001 RAL-819 1477 chr2R 22016063 22016066 chr2R 24975436 24975439 4 2959373 27.0 37.5 32.2 0.1 2959376 chr2R 22016063 intron CG34370 - chr2R 23495751 intergenic not near genes chr2R 24975439 5` UTR CR45252 + chr2R_4_23495001 chr2R_23495001 RAL-819 1478 chr2R 22029500 22029534 chr2R 22029603 22029637 21 102 8.5 0.0 4.2 4.0 137 chr2R 22029500 intron CG34370 - chr2R 22029568 intron CG34370 - chr2R 22029637 intron CG34370 - chr2R_21_22025001 chr2R_22025001 RAL-819 1479 chr2R 22037750 22037800 chr2R 22037857 22037895 20 104 8.5 0.0 4.2 3.8 145 chr2R 22037750 intron CG34370 - chr2R 22037822 intron CG34370 - chr2R 22037895 intron CG34370 - chr2R_20_22035001 chr2R_22035001 RAL-819 1480 chr2R 22072655 22072712 chr2R 22072765 22072801 27 107 7.0 13.0 10.0 2.5 146 chr2R 22072655 intron CG11474 - chr2R 22072728 intron CG11474 - chr2R 22072801 exon CG11474 - chr2R_27_22070001 chr2R_22070001 RAL-819 1481 chr2R 22185651 22185688 chr2R 22185775 22185812 11 123 19.0 6.0 12.5 0.8 161 chr2R 22185651 exon MED16 + chr2R 22185732 3` UTR MED16 + chr2R 22185812 3` UTR MED16 + chr2R_11_22185001 chr2R_22185001 RAL-819 1482 chr2R 22349672 22349717 chr2R 22351481 22351526 jockey 49 1807 14.0 13.5 13.8 3.3 1854 chr2R 22349672 intron Liprin-gamma - chr2R 22350599 intron Liprin-gamma - chr2R 22351526 intron Liprin-gamma - chr2R_49_22350001 chr2R_22350001 RAL-819 1483 chr2R 22360175 22360210 chr2R 22360284 22360307 30 105 15.0 15.5 15.2 1.9 132 chr2R 22360175 intron Liprin-gamma - chr2R 22360241 intron Liprin-gamma - chr2R 22360307 intron Liprin-gamma - chr2R_30_22360001 chr2R_22360001 RAL-819 1484 chr2R 22360360 22360380 chr2R 22360818 22360829 jockey 16 456 30.0 15.5 22.8 0.7 469 chr2R 22360360 intron Liprin-gamma - chr2R 22360594 intron Liprin-gamma - chr2R 22360829 intron Liprin-gamma - chr2R_16_22360001 chr2R_22360001 RAL-819 1485 chr2R 22377781 22377840 chr2R 22377892 22377948 42 105 14.0 8.5 11.2 3.4 167 chr2R 22377781 3` UTR Rtf1 + chr2R 22377864 3` UTR Rtf1 + chr2R 22377948 3` UTR Rtf1 + chr2R_42_22375001 chr2R_22375001 RAL-819 1486 chr2R 22380337 22380346 chr2R 22380453 22380462 9 116 24.5 0.0 12.2 0.7 125 chr2R 22380337 intron wrapper + chr2R 22380400 intron wrapper + chr2R 22380462 intron wrapper + chr2R_9_22380001 chr2R_22380001 RAL-819 1487 chr2R 22459692 22459700 chr2R 22459806 22459809 4 111 28.5 31.5 30.0 0.1 117 chr2R 22459692 intron CG10384 + chr2R 22459750 intron CG10384 + chr2R 22459809 intron CG10384 + chr2R_4_22455001 chr2R_22455001 RAL-819 1488 chr2R 22460356 22460406 chr2R 22460460 22460510 50 103 12.0 12.0 12.0 3.8 154 chr2R 22460356 intron CG10384 + chr2R 22460433 intron CG10384 + chr2R 22460510 intron CG10384 + chr2R_50_22460001 chr2R_22460001 RAL-819 1489 chr2R 22461803 22461812 chr2R 22461895 22461913 12 100 25.5 15.5 20.5 0.6 110 chr2R 22461803 intron CG10384 + chr2R 22461858 intron CG10384 + chr2R 22461913 intron CG10384 + chr2R_12_22460001 chr2R_22460001 RAL-819 1490 chr2R 22461813 22461850 chr2R 22461894 22461951 35 99 13.0 15.0 14.0 2.3 138 chr2R 22461813 intron CG10384 + chr2R 22461882 intron CG10384 + chr2R 22461951 intron CG10384 + chr2R_35_22460001 chr2R_22460001 RAL-819 1491 chr2R 22525730 22525777 chr2R 22529305 22529357 jockey 42 3578 15.0 17.5 16.2 2.4 3627 chr2R 22525730 intron px - chr2R 22527544 intron px - chr2R 22529357 intron px - chr2R_42_22525001 chr2R_22525001 RAL-819 1492 chr2R 22549369 22549384 chr2R 22549447 22549491 8 102 0.0 42.0 21.0 0.4 122 chr2R 22549369 intron px - chr2R 22549430 intron px - chr2R 22549491 intron px - chr2R_8_22545001 chr2R_22545001 RAL-819 1493 chr2R 22574125 22574188 chr2R 22574233 22574269 33 101 8.5 10.5 9.5 3.1 144 chr2R 22574125 intron dnr1 - chr2R 22574197 intron dnr1 - chr2R 22574269 intron dnr1 - chr2R_33_22570001 chr2R_22570001 RAL-819 1494 chr2R 22580413 22580445 chr2R 22586582 22586602 diver 17 6168 7.5 6.0 6.8 2.2 6189 chr2R 22580413 intron dnr1 - chr2R 22583508 intron dnr1 - chr2R 22586602 intron dnr1 - chr2R_17_22580001 chr2R_22580001 RAL-819 1495 chr2R 22588125 22588153 chr2R 22588245 22588273 18 118 22.0 26.5 24.2 0.7 148 chr2R 22588125 intron dnr1 - chr2R 22588199 intron dnr1 - chr2R 22588273 intron dnr1 - chr2R_18_22585001 chr2R_22585001 RAL-819 1496 chr2R 22620803 22620859 chr2R 22620928 22620959 43 122 8.5 9.5 9.0 4.3 156 chr2R 22620803 5` UTR CG33143 + chr2R 22620881 5` UTR CG33143 + chr2R 22620959 5` UTR CG33143 + chr2R_43_22620001 chr2R_22620001 RAL-819 1497 chr2R 22623428 22623440 chr2R 22623593 22623605 10 165 15.0 12.0 13.5 0.7 177 chr2R 22623428 intron CG33143 + chr2R 22623516 intron CG33143 + chr2R 22623605 intron CG33143 + chr2R_10_22620001 chr2R_22620001 RAL-819 1498 chr2R 22623441 22623482 chr2R 22623591 22623647 36 162 14.0 11.0 12.5 2.7 206 chr2R 22623441 intron CG33143 + chr2R 22623544 intron CG33143 + chr2R 22623647 intron CG33143 + chr2R_36_22620001 chr2R_22620001 RAL-819 1499 chr2R 22666750 22666784 chr2R 22666851 22666885 24 100 7.0 7.0 7.0 3.0 135 chr2R 22666750 5` UTR CR42868 + chr2R 22666818 intergenic CR42868 +,CR45269 -,CG30273 + chr2R 22666885 intergenic CR42868 +,CG30273 +,CR45269 - chr2R_24_22665001 chr2R_22665001 RAL-819 1500 chr2R 22739322 22739373 chr2R 22739425 22739461 35 93 14.0 11.0 12.5 2.6 139 chr2R 22739322 intron jbug - chr2R 22739392 intron jbug - chr2R 22739461 intron jbug - chr2R_35_22735001 chr2R_22735001 RAL-819 1501 chr2R 22752370 22752430 chr2R 22752502 22752561 38 131 6.5 11.5 9.0 3.8 191 chr2R 22752370 intron CG42260 - chr2R 22752466 intron CG42260 - chr2R 22752561 intron CG42260 - chr2R_38_22750001 chr2R_22750001 RAL-819 1502 chr2R 22756601 22756651 chr2R 22756710 22756754 11 104 15.5 1.0 8.2 1.2 153 chr2R 22756601 intron,intron CG42260 -,CR30267 + chr2R 22756678 intron,intron CG42260 -,CR30267 + chr2R 22756754 intron,intron CG42260 -,CR30267 + chr2R_11_22755001 chr2R_22755001 RAL-819 1503 chr2R 22774944 22774995 chr2R 22775388 22775419 jockey 29 443 12.5 14.5 13.5 2.0 475 chr2R 22774944 intron CG42260 - chr2R 22775182 intron CG42260 - chr2R 22775419 intron CG42260 - chr2R_29_22775001 chr2R_22775001 RAL-819 1504 chr2R 22787574 22787592 chr2R 22787732 22787750 25 158 8.0 10.0 9.0 2.5 176 chr2R 22787574 intron CG42260 - chr2R 22787662 intron CG42260 - chr2R 22787750 intron CG42260 - chr2R_25_22785001 chr2R_22785001 RAL-819 1505 chr2R 22789101 22789130 chr2R 22789242 22789276 16 141 16.0 21.5 18.8 0.8 175 chr2R 22789101 intron CG42260 - chr2R 22789188 intron CG42260 - chr2R 22789276 intron CG42260 - chr2R_16_22785001 chr2R_22785001 RAL-819 1506 chr2R 22835470 22835480 chr2R 22837459 22837468 9 1989 20.5 26.5 23.5 0.4 1998 chr2R 22835470 exon CG12490 + chr2R 22836469 exon CG12490 + chr2R 22837468 intron CG9825 + chr2R_9_22835001 chr2R_22835001 RAL-819 1507 chr2R 22835481 22835490 chr2R 22837426 22837480 7 1983 14.5 12.0 13.2 0.5 1999 chr2R 22835481 exon CG12490 + chr2R 22836480 exon CG12490 + chr2R 22837480 intron CG9825 + chr2R_7_22835001 chr2R_22835001 RAL-819 1508 chr2R 22835260 22835303 chr2R 22836355 22836408 9 1101 58.0 54.0 56.0 0.2 1148 chr2R 22835260 exon CG12490 + chr2R 22835834 exon CG12490 + chr2R 22836408 exon CG12490 + chr2R_9_22835001 chr2R_22835001 RAL-819 1509 chr2R 22843036 22843046 chr2R 22845027 22845037 flea 8 1991 18.0 11.0 14.5 0.5 2001 chr2R 22843036 intergenic CG9826 + chr2R 22844036 intergenic not near genes chr2R 22845037 intergenic not near genes chr2R_8_22840001 chr2R_22840001 RAL-819 1510 chr2R 22971473 22971525 chr2R 22971577 22971629 46 99 4.5 12.5 8.5 4.8 156 chr2R 22971473 intergenic not near genes chr2R 22971551 intergenic not near genes chr2R 22971629 intergenic not near genes chr2R_46_22970001 chr2R_22970001 RAL-819 1511 chr2R 23108957 23108958 chr2R 23109059 23109065 5 106 10.5 24.0 17.2 0.3 108 chr2R 23108957 intergenic not near genes chr2R 23109011 intergenic not near genes chr2R 23109065 intergenic not near genes chr2R_5_23105001 chr2R_23105001 RAL-819 1512 chr2R 23134812 23134848 chr2R 23134920 23134951 25 103 2.5 23.0 12.8 1.8 139 chr2R 23134812 intergenic not near genes chr2R 23134882 intergenic not near genes chr2R 23134951 intergenic not near genes chr2R_25_23130001 chr2R_23130001 RAL-819 1513 chr2R 23207834 23207855 chr2R 23207932 23207959 10 98 32.0 19.0 25.5 0.4 125 chr2R 23207834 intergenic not near genes chr2R 23207896 intergenic not near genes chr2R 23207959 intergenic not near genes chr2R_10_23205001 chr2R_23205001 RAL-819 1514 chr2R 23218982 23219007 chr2R 23219245 23219270 15 263 20.5 0.5 10.5 1.3 288 chr2R 23218982 intergenic not near genes chr2R 23219126 intergenic not near genes chr2R 23219270 intergenic not near genes chr2R_15_23215001 chr2R_23215001 RAL-819 1515 chr2R 23332669 23332673 chr2R 23333360 23333364 4 691 32.0 14.0 23.0 0.2 695 chr2R 23332669 intergenic not near genes chr2R 23333016 intergenic not near genes chr2R 23333364 intergenic not near genes chr2R_4_23330001 chr2R_23330001 RAL-819 1516 chr2R 23332674 23332724 chr2R 23333359 23333400 51 683 10.5 14.0 12.2 3.9 726 chr2R 23332674 intergenic not near genes chr2R 23333037 intergenic not near genes chr2R 23333400 intergenic not near genes chr2R_51_23330001 chr2R_23330001 RAL-819 1517 chr2R 23346527 23346546 chr2R 23346628 23346647 13 100 9.0 22.5 15.8 0.8 120 chr2R 23346527 intron CG3502 - chr2R 23346587 intron CG3502 - chr2R 23346647 intron,5` UTR CG3502 -,CG9863 + chr2R_13_23345001 chr2R_23345001 RAL-819 1518 chr2R 23346547 23346553 chr2R 23346627 23346654 8 98 8.0 22.5 15.2 0.5 107 chr2R 23346547 intron CG3502 - chr2R 23346600 intron CG3502 - chr2R 23346654 intron,5` UTR CG3502 -,CG9863 + chr2R_8_23345001 chr2R_23345001 RAL-819 1519 chr2R 23349584 23349609 chr2R 23349875 23349900 15 287 34.0 10.0 22.0 0.7 316 chr2R 23349584 intergenic not near genes chr2R 23349742 intergenic not near genes chr2R 23349900 intergenic not near genes chr2R_15_23345001 chr2R_23345001 RAL-819 1520 chr2R 23349612 23349641 chr2R 23349874 23349876 18 274 16.0 8.5 12.2 1.4 264 chr2R 23349612 intergenic not near genes chr2R 23349744 intergenic not near genes chr2R 23349876 intergenic not near genes chr2R_18_23345001 chr2R_23345001 RAL-819 1521 chr2R 23356253 23356287 chr2R 23356367 23356391 34 109 20.0 11.0 15.5 2.1 138 chr2R 23356253 3` UTR Rpi + chr2R 23356322 3` UTR Rpi + chr2R 23356391 3` UTR,3` UTR Rpi +,CG3500 - chr2R_34_23355001 chr2R_23355001 RAL-819 1522 chr2R 23356288 23356309 chr2R 23356361 23356423 33 102 13.5 9.0 11.2 2.7 135 chr2R 23356288 3` UTR Rpi + chr2R 23356356 3` UTR Rpi + chr2R 23356423 3` UTR,3` UTR Rpi +,CG3500 - chr2R_33_23355001 chr2R_23355001 RAL-819 1523 chr2R 23421333 23421388 chr2R 23421448 23421498 35 109 8.5 7.5 8.0 3.9 165 chr2R 23421333 intergenic CG9815 - chr2R 23421416 intergenic CG9815 - chr2R 23421498 intergenic CG9815 - chr2R_35_23420001 chr2R_23420001 RAL-819 1524 chr2R 23429048 23429104 chr2R 23429231 23429256 51 180 10.5 13.5 12.0 3.9 208 chr2R 23429048 intron CG9815 - chr2R 23429152 intron CG9815 - chr2R 23429256 intron CG9815 - chr2R_51_23425001 chr2R_23425001 RAL-819 1525 chr2R 23437206 23437242 chr2R 23437306 23437326 20 99 15.5 11.0 13.2 1.4 120 chr2R 23437206 intergenic not near genes chr2R 23437266 intergenic not near genes chr2R 23437326 intergenic not near genes chr2R_20_23435001 chr2R_23435001 RAL-819 1526 chr2R 23515157 23515160 chr2R 23515584 23515589 7 429 29.0 11.0 20.0 0.3 432 chr2R 23515157 intergenic not near genes chr2R 23515373 intergenic not near genes chr2R 23515589 intergenic not near genes chr2R_7_23515001 chr2R_23515001 RAL-819 1527 chr2R 23518168 23518211 chr2R 23518271 23518314 52 102 16.0 7.5 11.8 4.1 146 chr2R 23518168 intergenic not near genes chr2R 23518241 intergenic not near genes chr2R 23518314 intergenic not near genes chr2R_52_23515001 chr2R_23515001 RAL-819 1528 chr2R 23529550 23529559 chr2R 23537151 23537160 412 5 7599 44.5 26.0 35.2 0.1 7610 chr2R 23529550 intron bw - chr2R 23533355 intron bw - chr2R 23537160 exon bw - chr2R_5_23530001 chr2R_23530001 RAL-819 1529 chr2R 23529560 23529607 chr2R 23537149 23537153 412 38 7584 16.5 22.5 19.5 1.9 7593 chr2R 23529560 intron bw - chr2R 23533356 intron bw - chr2R 23537153 exon bw - chr2R_38_23530001 chr2R_23530001 RAL-819 1530 chr2R 23553701 23553724 chr2R 23553816 23553837 12 115 22.5 16.0 19.2 0.6 136 chr2R 23553701 intron pita - chr2R 23553769 intron pita - chr2R 23553837 intron pita - chr2R_12_23550001 chr2R_23550001 RAL-819 1531 chr2R 23567005 23567048 chr2R 23567115 23567165 50 109 14.5 16.5 15.5 3.0 160 chr2R 23567005 intron apt + chr2R 23567085 intron apt + chr2R 23567165 intron apt + chr2R_50_23565001 chr2R_23565001 RAL-819 1532 chr2R 23576218 23576273 chr2R 23576376 23576420 42 154 12.5 7.5 10.0 3.8 202 chr2R 23576218 intron apt + chr2R 23576319 intron apt + chr2R 23576420 intron apt + chr2R_42_23575001 chr2R_23575001 RAL-819 1533 chr2R 23607010 23607192 chr2R 23607116 23607310 99 109 5.0 3.5 4.2 19.0 300 chr2R 23607010 intron CG17664 - chr2R 23607160 intron CG17664 - chr2R 23607310 intron CG17664 - chr2R_99_23605001 chr2R_23605001 RAL-819 1534 chr2R 23684113 23684124 chr2R 23684234 23684245 8 121 28.0 12.5 20.2 0.4 132 chr2R 23684113 exon St3 + chr2R 23684179 exon St3 + chr2R 23684245 intron St3 + chr2R_8_23680001 chr2R_23680001 RAL-819 1535 chr2R 23684126 23684160 chr2R 23684230 23684281 25 119 10.5 11.5 11.0 2.1 155 chr2R 23684126 exon St3 + chr2R 23684204 intron St3 + chr2R 23684281 exon St3 + chr2R_25_23680001 chr2R_23680001 RAL-819 1536 chr2R 23718289 23718294 chr2R 23718405 23718410 4 116 109.5 140.5 125.0 0.0 121 chr2R 23718289 intron Sesn + chr2R 23718350 intron Sesn + chr2R 23718410 intron Sesn + chr2R_4_23715001 chr2R_23715001 RAL-819 1537 chr2R 23718285 23718328 chr2R 23718417 23718459 34 127 129.5 128.5 129.0 0.3 174 chr2R 23718285 intron Sesn + chr2R 23718372 intron Sesn + chr2R 23718459 intron Sesn + chr2R_34_23715001 chr2R_23715001 RAL-819 1538 chr2R 23726204 23726258 chr2R 23726312 23726362 55 110 10.5 9.5 10.0 5.0 158 chr2R 23726204 intron Sesn + chr2R 23726283 intron Sesn + chr2R 23726362 intron Sesn + chr2R_55_23725001 chr2R_23725001 RAL-819 1539 chr2R 23739726 23739732 chr2R 23739825 23739833 4 99 24.0 13.5 18.8 0.2 107 chr2R 23739726 intron egl - chr2R 23739780 intron egl - chr2R 23739833 intron egl - chr2R_4_23735001 chr2R_23735001 RAL-819 1540 chr2R 23776131 23776175 chr2R 23776231 23776276 39 95 12.0 15.5 13.8 2.6 145 chr2R 23776131 intron CG9850 - chr2R 23776204 intron CG9850 - chr2R 23776276 intron CG9850 - chr2R_39_23775001 chr2R_23775001 RAL-819 1541 chr2R 23914297 23914310 chr2R 23921946 23921959 412 10 7648 30.0 23.5 26.8 0.4 7662 chr2R 23914297 exon kcc + chr2R 23918128 intron kcc + chr2R 23921959 intron kcc + chr2R_10_23915001 chr2R_23915001 RAL-819 1542 chr2R 23914311 23914326 chr2R 23921945 23921975 412 19 7646 19.0 23.0 21.0 0.9 7664 chr2R 23914311 exon kcc + chr2R 23918143 intron kcc + chr2R 23921975 exon kcc + chr2R_19_23915001 chr2R_23915001 RAL-819 1543 chr2R 23914327 23914331 chr2R 23921943 23921980 412 7 7642 15.0 24.0 19.5 0.3 7653 chr2R 23914327 exon kcc + chr2R 23918154 intron kcc + chr2R 23921980 exon kcc + chr2R_7_23915001 chr2R_23915001 RAL-819 1544 chr2R 23986488 23986546 chr2R 23986593 23986651 55 104 14.5 12.0 13.2 3.9 163 chr2R 23986488 intron Phm - chr2R 23986570 intron Phm - chr2R 23986651 intron,5` UTR Phm -,CG30178 + chr2R_55_23985001 chr2R_23985001 RAL-819 1545 chr2R 24031356 24031412 chr2R 24031465 24031510 58 108 16.0 9.5 12.8 4.2 154 chr2R 24031356 5` UTR CG30172 - chr2R 24031433 intergenic CG30172 -,Chi - chr2R 24031510 intergenic Chi -,CG30172 - chr2R_58_24030001 chr2R_24030001 RAL-819 1546 chr2R 24045847 24045903 chr2R 24045956 24046002 56 106 11.5 12.5 12.0 4.3 155 chr2R 24045847 intron tsr - chr2R 24045924 intron tsr - chr2R 24046002 intron tsr - chr2R_56_24045001 chr2R_24045001 RAL-819 1547 chr2R 24147057 24147060 chr2R 24154651 24154653 412 7 7599 37.5 27.0 32.2 0.2 7596 chr2R 24147057 intron Dat + chr2R 24150855 intron Dat + chr2R 24154653 intron Dat + chr2R_7_24150001 chr2R_24150001 RAL-819 1548 chr2R 24147061 24147066 chr2R 24154648 24154651 412 8 7595 34.5 25.5 30.0 0.3 7590 chr2R 24147061 intron Dat + chr2R 24150856 intron Dat + chr2R 24154651 intron Dat + chr2R_8_24150001 chr2R_24150001 RAL-819 1549 chr2R 24147067 24147097 chr2R 24154647 24154689 412 21 7595 13.0 25.5 19.2 1.0 7622 chr2R 24147067 intron Dat + chr2R 24150878 intron Dat + chr2R 24154689 intron Dat + chr2R_21_24150001 chr2R_24150001 RAL-819 1550 chr2R 24177209 24177264 chr2R 24184719 24184774 412 50 7509 11.5 12.0 11.8 3.9 7565 chr2R 24177209 3` UTR Nop60B + chr2R 24180992 intron Nop60B + chr2R 24184774 3` UTR Nop60B + chr2R_50_24180001 chr2R_24180001 RAL-819 1551 chr2R 24282244 24282298 chr2R 24282347 24282387 41 101 15.5 15.5 15.5 2.5 143 chr2R 24282244 intron nvy + chr2R 24282316 intron nvy + chr2R 24282387 intron nvy + chr2R_41_24280001 chr2R_24280001 RAL-819 1552 chr2R 24290536 24290594 chr2R 24290644 24290702 47 107 15.5 13.5 14.5 3.0 166 chr2R 24290536 3` UTR nvy + chr2R 24290619 3` UTR nvy + chr2R 24290702 3` UTR nvy + chr2R_47_24290001 chr2R_24290001 RAL-819 1553 chr2R 24323595 24323632 chr2R 24323713 24323750 41 115 24.5 16.0 20.2 1.9 155 chr2R 24323595 intergenic not near genes chr2R 24323672 intergenic not near genes chr2R 24323750 intergenic not near genes chr2R_41_24320001 chr2R_24320001 RAL-819 1554 chr2R 24323633 24323643 chr2R 24323711 24323740 15 108 19.5 16.0 17.8 0.8 107 chr2R 24323633 intergenic not near genes chr2R 24323686 intergenic not near genes chr2R 24323740 intergenic not near genes chr2R_15_24320001 chr2R_24320001 RAL-819 1555 chr2R 24323645 24323652 chr2R 24323709 24323755 9 99 14.0 15.5 14.8 0.6 110 chr2R 24323645 intergenic not near genes chr2R 24323700 intergenic not near genes chr2R 24323755 intergenic not near genes chr2R_9_24320001 chr2R_24320001 RAL-819 1556 chr2R 24353401 24353450 chr2R 24361788 24361822 roo 33 8386 12.5 13.0 12.8 2.4 8421 chr2R 24353401 intron,intron bs +,CR44811 - chr2R 24357612 intron,intron bs +,CR44811 - chr2R 24361822 intron,intron bs +,CR44811 - chr2R_33_24355001 chr2R_24355001 RAL-819 1557 chr2R 24383801 24383854 chr2R 24383907 24383954 48 103 11.0 11.5 11.2 3.9 153 chr2R 24383801 intron mAChR-A - chr2R 24383878 intron mAChR-A - chr2R 24383954 exon mAChR-A - chr2R_48_24380001 chr2R_24380001 RAL-819 1558 chr2R 24414849 24414892 chr2R 24414941 24414983 21 83 8.5 9.5 9.0 2.1 134 chr2R 24414849 3` UTR,exon CG45068 +,CG45069 + chr2R 24414916 3` UTR,exon CG45068 +,CG45069 + chr2R 24414983 3` UTR,exon CG45068 +,CG45069 + chr2R_21_24410001 chr2R_24410001 RAL-819 1559 chr2R 24493062 24493119 chr2R 24493175 24493230 32 112 0.0 10.0 5.0 5.3 168 chr2R 24493062 intergenic CG13590 -,CG13589 - chr2R 24493146 intergenic CG13590 -,CG13589 - chr2R 24493230 intergenic CG13590 -,CG13589 - chr2R_32_24490001 chr2R_24490001 RAL-819 1560 chr2R 24509283 24509340 chr2R 24509393 24509450 38 109 11.5 17.0 14.2 2.5 167 chr2R 24509283 intergenic Letm1 - chr2R 24509366 intergenic Letm1 - chr2R 24509450 intergenic Letm1 - chr2R_38_24505001 chr2R_24505001 RAL-819 1561 chr2R 24542571 24542626 chr2R 24542692 24542747 46 120 14.0 5.5 9.8 4.3 176 chr2R 24542571 intron,intron CG4622 -,ITP + chr2R 24542659 intron,intron CG4622 -,ITP + chr2R 24542747 intron,intron CG4622 -,ITP + chr2R_46_24540001 chr2R_24540001 RAL-819 1562 chr2R 24630530 24630583 chr2R 24630754 24630772 42 223 11.5 16.0 13.8 2.8 242 chr2R 24630530 intron CG13594 - chr2R 24630651 intron CG13594 - chr2R 24630772 intron CG13594 - chr2R_42_24630001 chr2R_24630001 RAL-819 1563 chr2R 24647552 24647618 chr2R 24655148 24655200 412 33 7588 0.0 13.0 6.5 4.4 7648 chr2R 24647552 intergenic not near genes chr2R 24651376 intergenic not near genes chr2R 24655200 intergenic not near genes chr2R_33_24650001 chr2R_24650001 RAL-819 1564 chr2R 24722339 24722398 chr2R 24722446 24722505 58 106 14.0 17.0 15.5 3.5 166 chr2R 24722339 intron Mid1 - chr2R 24722422 intron Mid1 - chr2R 24722505 intron Mid1 - chr2R_58_24720001 chr2R_24720001 RAL-819 1565 chr2R 24727859 24727880 chr2R 24735392 24735407 mdg1 11 7530 20.5 14.5 17.5 0.6 7548 chr2R 24727859 intron Mid1 - chr2R 24731633 intron Mid1 - chr2R 24735407 intron Mid1 - chr2R_11_24730001 chr2R_24730001 RAL-819 1566 chr2R 24727884 24727917 chr2R 24735390 24735446 mdg1 39 7522 7.0 13.0 10.0 3.5 7562 chr2R 24727884 intron Mid1 - chr2R 24731665 intron Mid1 - chr2R 24735446 intron Mid1 - chr2R_39_24730001 chr2R_24730001 RAL-819 1567 chr2R 24747250 24747252 chr2R 24747334 24747357 6 100 22.5 16.0 19.2 0.3 107 chr2R 24747250 intron CG30421 + chr2R 24747304 intron CG30421 + chr2R 24747357 intron CG30421 + chr2R_6_24745001 chr2R_24745001 RAL-819 1568 chr2R 24747253 24747280 chr2R 24747331 24747339 17 94 9.0 15.5 12.2 1.3 86 chr2R 24747253 intron CG30421 + chr2R 24747296 intron CG30421 + chr2R 24747339 intron CG30421 + chr2R_17_24745001 chr2R_24745001 RAL-819 1569 chr2R 24763600 24763644 chr2R 24765590 24765645 G2 45 1997 14.5 14.5 14.5 2.9 2045 chr2R 24763600 exon CG3894 + chr2R 24764622 intron CG3894 + chr2R 24765645 exon CG3894 + chr2R_45_24760001 chr2R_24760001 RAL-819 1570 chr2R 24767974 24768021 chr2R 24768079 24768126 48 106 9.0 21.5 15.2 3.0 152 chr2R 24767974 5` UTR GstE12 - chr2R 24768050 5` UTR GstE12 - chr2R 24768126 5` UTR GstE12 - chr2R_48_24765001 chr2R_24765001 RAL-819 1571 chr2R 24837938 24837964 chr2R 24838046 24838051 5 96 17.0 16.5 16.8 0.3 113 chr2R 24837938 intergenic not near genes chr2R 24837994 intergenic not near genes chr2R 24838051 intergenic not near genes chr2R_5_24835001 chr2R_24835001 RAL-819 1572 chr2R 24846440 24846445 chr2R 24846548 24846548 4 107 40.0 39.5 39.8 0.1 108 chr2R 24846440 intergenic not near genes chr2R 24846494 intergenic not near genes chr2R 24846548 intergenic not near genes chr2R_4_24845001 chr2R_24845001 RAL-819 1573 chr2R 22016063 22016066 chr2R 24975352 24975360 4 2959290 27.0 22.5 24.8 0.2 2959297 chr2R 22016063 intron CG34370 - chr2R 23495712 intergenic not near genes chr2R 24975360 intergenic CR45252 +,CG2736 - chr2R_4_23495001 chr2R_23495001 RAL-819 1574 chr2R 1355076 1355078 chr2R 24976356 24976358 5 23621280 39.5 31.0 35.2 0.1 23621282 chr2R 1355076 intron l(2)41Ab + chr2R 13165717 intron GLaz - chr2R 24976358 intergenic emp -,CR45252 + chr2R_5_13165001 chr2R_13165001 RAL-819 1575 chr2R 25018689 25018746 chr2R 25018877 25018903 48 185 12.0 14.5 13.2 3.4 214 chr2R 25018689 intron uzip + chr2R 25018796 intron uzip + chr2R 25018903 intron uzip + chr2R_48_25015001 chr2R_25015001 RAL-819 1576 chr2R 25101249 25101308 chr2R 25101376 25101435 36 125 9.5 12.0 10.8 3.1 186 chr2R 25101249 intron lov - chr2R 25101342 intron lov - chr2R 25101435 intron lov - chr2R_36_25100001 chr2R_25100001 RAL-819 1577 chr2R 25102499 25102521 chr2R 25102693 25102703 12 191 30.0 17.0 23.5 0.5 204 chr2R 25102499 intron lov - chr2R 25102601 intron lov - chr2R 25102703 intron lov - chr2R_12_25100001 chr2R_25100001 RAL-819 1578 chr2R 25102525 25102555 chr2R 25102690 25102733 24 185 10.0 16.0 13.0 1.7 208 chr2R 25102525 intron lov - chr2R 25102629 intron lov - chr2R 25102733 intron lov - chr2R_24_25100001 chr2R_25100001 RAL-819 1579 chr2R 25104750 25104805 chr2R 25104900 25104955 38 149 12.0 10.5 11.2 3.1 205 chr2R 25104750 intron lov - chr2R 25104852 intron lov - chr2R 25104955 intron lov - chr2R_38_25100001 chr2R_25100001 RAL-819 1580 chr2R 25130986 25131034 chr2R 25131088 25131136 33 100 12.0 7.5 9.8 3.1 150 chr2R 25130986 intron lov - chr2R 25131061 intron lov - chr2R 25131136 intron lov - chr2R_33_25130001 chr2R_25130001 RAL-819 1581 chr2R 25141629 25141682 chr2R 25159342 25159397 roo 33 17714 12.5 11.5 12.0 2.5 17768 chr2R 25141629 intergenic not near genes chr2R 25150513 intergenic not near genes chr2R 25159397 intergenic not near genes chr2R_33_25150001 chr2R_25150001 RAL-819 1582 chr2R 25171470 25171517 chr2R 25171572 25171619 16 102 7.5 8.0 7.8 1.8 149 chr2R 25171470 intergenic not near genes chr2R 25171544 intergenic not near genes chr2R 25171619 intergenic not near genes chr2R_16_25170001 chr2R_25170001 RAL-819 1583 chr2R 25201208 25201250 chr2R 25201359 25201401 16 150 9.0 6.0 7.5 1.9 193 chr2R 25201208 intron CG9380 - chr2R 25201304 intron CG9380 - chr2R 25201401 intron CG9380 - chr2R_16_25200001 chr2R_25200001 RAL-819 1584 chr3L 110187 110242 chr3L 119379 119434 roo 46 9189 6.0 11.5 8.8 4.7 9247 chr3L 110187 intergenic not near genes chr3L 114810 intergenic not near genes chr3L 119434 intergenic not near genes chr3L_46_110001 chr3L_110001 RAL-819 1585 chr3L 402663 402670 chr3L 409741 409748 297 8 7077 41.0 17.0 29.0 0.3 7085 chr3L 402663 intergenic not near genes chr3L 406206 intergenic not near genes chr3L 409748 intergenic not near genes chr3L_8_405001 chr3L_405001 RAL-819 1586 chr3L 402671 402718 chr3L 409740 409790 297 53 7073 18.0 16.5 17.2 2.9 7119 chr3L 402671 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409790 intergenic not near genes chr3L_53_405001 chr3L_405001 RAL-819 1587 chr3L 421030 421083 chr3L 421151 421204 41 118 9.5 14.0 11.8 3.2 174 chr3L 421030 intergenic not near genes chr3L 421117 intergenic not near genes chr3L 421204 intergenic not near genes chr3L_41_420001 chr3L_420001 RAL-819 1588 chr3L 491615 491665 chr3L 491722 491772 33 104 14.5 8.5 11.5 2.6 157 chr3L 491615 intron klar - chr3L 491694 intron klar - chr3L 491772 intron klar - chr3L_33_490001 chr3L_490001 RAL-819 1589 chr3L 563944 564001 chr3L 564148 564205 54 202 9.0 12.0 10.5 4.7 261 chr3L 563944 intron hipk + chr3L 564074 intron hipk + chr3L 564205 intron hipk + chr3L_54_560001 chr3L_560001 RAL-819 1590 chr3L 592941 592959 chr3L 593042 593060 13 101 15.5 11.5 13.5 0.9 119 chr3L 592941 intergenic MED14 + chr3L 593000 intergenic MED14 + chr3L 593060 intergenic MED14 + chr3L_13_590001 chr3L_590001 RAL-819 1591 chr3L 592960 592965 chr3L 593041 593066 6 98 13.5 11.5 12.5 0.4 106 chr3L 592960 intergenic MED14 + chr3L 593013 intergenic MED14 + chr3L 593066 intergenic MED14 + chr3L_6_590001 chr3L_590001 RAL-819 1592 chr3L 606869 606922 chr3L 606970 607026 37 102 0.0 0.0 0.0 37.0 157 chr3L 606869 intergenic Reg-2 - chr3L 606948 intergenic Reg-2 - chr3L 607026 intergenic Reg-2 - chr3L_37_605001 chr3L_605001 RAL-819 1593 chr3L 705225 705262 chr3L 705321 705353 30 100 20.0 13.0 16.5 1.7 128 chr3L 705225 intergenic CR44514 + chr3L 705289 intergenic CR44514 + chr3L 705353 5` UTR CR44514 + chr3L_30_705001 chr3L_705001 RAL-819 1594 chr3L 705876 705917 chr3L 705997 706038 26 121 19.0 10.5 14.8 1.6 162 chr3L 705876 intergenic CG13895 -,CR44514 + chr3L 705957 3` UTR CG13895 - chr3L 706038 3` UTR CG13895 - chr3L_26_705001 chr3L_705001 RAL-819 1595 chr3L 713440 713449 chr3L 713542 713551 5 102 23.5 10.0 16.8 0.3 111 chr3L 713440 intergenic not near genes chr3L 713496 intergenic not near genes chr3L 713551 intergenic not near genes chr3L_5_710001 chr3L_710001 RAL-819 1596 chr3L 732796 732847 chr3L 733043 733094 40 241 10.5 15.5 13.0 2.9 298 chr3L 732796 intergenic not near genes chr3L 732945 intergenic not near genes chr3L 733094 intergenic not near genes chr3L_40_730001 chr3L_730001 RAL-819 1597 chr3L 789888 789947 chr3L 790398 790458 roo 17 511 3.0 0.5 1.8 6.1 570 chr3L 789888 intergenic not near genes chr3L 790173 intergenic not near genes chr3L 790458 intergenic not near genes chr3L_17_790001 chr3L_790001 RAL-819 1598 chr3L 802565 802566 chr3L 11777678 11777678 6 10975113 63.0 42.0 52.5 0.1 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_6_6290001 chr3L_6290001 RAL-819 1599 chr3L 857978 858031 chr3L 866479 866522 Tirant 38 8498 14.5 13.0 13.8 2.6 8544 chr3L 857978 intergenic not near genes chr3L 862250 intergenic not near genes chr3L 866522 5` UTR CG12502 + chr3L_38_860001 chr3L_860001 RAL-819 1600 chr3L 925151 925155 chr3L 932602 932606 mdg1 4 7451 35.5 15.0 25.2 0.2 7455 chr3L 925151 intron Glut1 + chr3L 928878 intron Glut1 + chr3L 932606 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-819 1601 chr3L 925160 925209 chr3L 932601 932660 mdg1 39 7449 10.5 14.5 12.5 2.9 7500 chr3L 925160 intron Glut1 + chr3L 928910 intron Glut1 + chr3L 932660 intron Glut1 + chr3L_39_925001 chr3L_925001 RAL-819 1602 chr3L 933847 933904 chr3L 934005 934061 31 157 3.0 12.0 7.5 3.6 214 chr3L 933847 intron Glut1 + chr3L 933954 intron Glut1 + chr3L 934061 intron Glut1 + chr3L_31_930001 chr3L_930001 RAL-819 1603 chr3L 939264 939295 chr3L 939380 939413 7 109 30.5 18.0 24.2 0.3 149 chr3L 939264 intron Glut1 + chr3L 939338 intron Glut1 + chr3L 939413 intron Glut1 + chr3L_7_935001 chr3L_935001 RAL-819 1604 chr3L 939755 939789 chr3L 940896 940935 jockey 34 1144 20.5 19.5 20.0 1.6 1180 chr3L 939755 intron Glut1 + chr3L 940345 intron Glut1 + chr3L 940935 intron Glut1 + chr3L_34_940001 chr3L_940001 RAL-819 1605 chr3L 939790 939792 chr3L 940888 940926 jockey 6 1133 19.0 15.5 17.2 0.3 1136 chr3L 939790 intron Glut1 + chr3L 940358 intron Glut1 + chr3L 940926 intron Glut1 + chr3L_6_940001 chr3L_940001 RAL-819 1606 chr3L 976553 976573 chr3L 976704 976724 14 151 10.5 25.0 17.8 0.7 171 chr3L 976553 intron Glut1 + chr3L 976638 intron Glut1 + chr3L 976724 intron Glut1 + chr3L_14_975001 chr3L_975001 RAL-819 1607 chr3L 1001843 1001877 chr3L 1001946 1001975 15 98 18.0 21.5 19.8 0.7 132 chr3L 1001843 intron trio - chr3L 1001909 intron trio - chr3L 1001975 intron trio - chr3L_15_1000001 chr3L_1000001 RAL-819 1608 chr3L 1021865 1021870 chr3L 1021981 1021988 5 118 6.5 0.5 3.5 1.1 123 chr3L 1021865 intron trio - chr3L 1021926 intron trio - chr3L 1021988 intron trio - chr3L_5_1020001 chr3L_1020001 RAL-819 1609 chr3L 1047338 1047379 chr3L 1055163 1055184 412 15 7828 14.0 14.5 14.2 1.0 7846 chr3L 1047338 intron bab1 - chr3L 1051261 intron bab1 - chr3L 1055184 intron bab1 - chr3L_15_1050001 chr3L_1050001 RAL-819 1610 chr3L 1047380 1047385 chr3L 1055162 1055164 412 12 7803 9.5 14.0 11.8 0.9 7784 chr3L 1047380 intron bab1 - chr3L 1051272 intron bab1 - chr3L 1055164 intron bab1 - chr3L_12_1050001 chr3L_1050001 RAL-819 1611 chr3L 1109621 1109624 chr3L 1109734 1109737 4 113 32.5 20.0 26.2 0.1 116 chr3L 1109621 intergenic not near genes chr3L 1109679 intergenic not near genes chr3L 1109737 intergenic not near genes chr3L_4_1105001 chr3L_1105001 RAL-819 1612 chr3L 1109625 1109663 chr3L 1109729 1109776 30 111 11.5 17.0 14.2 2.0 151 chr3L 1109625 intergenic not near genes chr3L 1109700 intergenic not near genes chr3L 1109776 intergenic not near genes chr3L_30_1105001 chr3L_1105001 RAL-819 1613 chr3L 1154119 1154149 chr3L 1163288 1163324 roo 21 9173 13.0 19.0 16.0 1.2 9205 chr3L 1154119 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163324 intron bab2 - chr3L_21_1155001 chr3L_1155001 RAL-819 1614 chr3L 1154151 1154158 chr3L 1163280 1163333 roo 8 9169 7.5 14.0 10.8 0.7 9182 chr3L 1154151 intron bab2 - chr3L 1158742 intron bab2 - chr3L 1163333 intron bab2 - chr3L_8_1155001 chr3L_1155001 RAL-819 1615 chr3L 1219569 1219622 chr3L 1227327 1227380 412 41 7751 9.5 16.0 12.8 3.0 7811 chr3L 1219569 intron mwh + chr3L 1223474 intron mwh + chr3L 1227380 intron mwh + chr3L_41_1220001 chr3L_1220001 RAL-819 1616 chr3L 1251798 1251839 chr3L 1251907 1251940 10 101 0.5 0.5 0.5 6.7 142 chr3L 1251798 intergenic CG9129 +,CG9130 +,CG9133 + chr3L 1251869 intergenic CG9129 +,CG9130 +,CG9133 + chr3L 1251940 intergenic CG9130 +,CG9133 +,CG9129 + chr3L_10_1250001 chr3L_1250001 RAL-819 1617 chr3L 1310983 1310995 chr3L 1315818 1315830 6 4836 108.5 126.5 117.5 0.1 4847 chr3L 1310983 exon CG2469 + chr3L 1313406 intergenic CG9186 -,CG9153 + chr3L 1315830 exon CG9153 + chr3L_6_1310001 chr3L_1310001 RAL-819 1618 chr3L 1310982 1311015 chr3L 1315832 1315850 21 4841 116.0 125.0 120.5 0.2 4868 chr3L 1310982 exon CG2469 + chr3L 1313416 intergenic CG9186 -,CG9153 + chr3L 1315850 exon CG9153 + chr3L_21_1310001 chr3L_1310001 RAL-819 1619 chr3L 1310981 1311040 chr3L 1315852 1315875 21 4842 127.5 121.0 124.2 0.2 4894 chr3L 1310981 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315875 exon CG9153 + chr3L_21_1310001 chr3L_1310001 RAL-819 1620 chr3L 1347132 1347146 chr3L 1347242 1347256 7 109 37.0 17.5 27.2 0.2 124 chr3L 1347132 intron Ptp61F - chr3L 1347194 intron Ptp61F - chr3L 1347256 intron Ptp61F - chr3L_7_1345001 chr3L_1345001 RAL-819 1621 chr3L 1347147 1347192 chr3L 1347241 1347285 52 104 9.0 17.0 13.0 3.7 138 chr3L 1347147 intron Ptp61F - chr3L 1347216 intron Ptp61F - chr3L 1347285 intron Ptp61F - chr3L_52_1345001 chr3L_1345001 RAL-819 1622 chr3L 1371698 1371735 chr3L 1371809 1371846 35 109 19.5 14.0 16.8 2.0 148 chr3L 1371698 intron,intron Ptp61F -,ru + chr3L 1371772 intron,intron Ptp61F -,ru + chr3L 1371846 intron,intron Ptp61F -,ru + chr3L_35_1370001 chr3L_1370001 RAL-819 1623 chr3L 1371736 1371755 chr3L 1371808 1371860 20 101 13.0 13.5 13.2 1.4 124 chr3L 1371736 intron,intron Ptp61F -,ru + chr3L 1371798 intron,intron Ptp61F -,ru + chr3L 1371860 intron,intron Ptp61F -,ru + chr3L_20_1370001 chr3L_1370001 RAL-819 1624 chr3L 1372337 1372376 chr3L 1372440 1372459 22 101 13.0 10.0 11.5 1.8 122 chr3L 1372337 intron,intron Ptp61F -,ru + chr3L 1372398 intron,intron Ptp61F -,ru + chr3L 1372459 intron,intron Ptp61F -,ru + chr3L_22_1370001 chr3L_1370001 RAL-819 1625 chr3L 1396715 1396757 chr3L 1396824 1396866 32 105 41.0 47.0 44.0 0.7 151 chr3L 1396715 intron Ptp61F - chr3L 1396790 intron Ptp61F - chr3L 1396866 intron Ptp61F - chr3L_32_1395001 chr3L_1395001 RAL-819 1626 chr3L 1415749 1415808 chr3L 1415856 1415905 56 102 12.0 16.5 14.2 3.7 156 chr3L 1415749 intron Ptp61F - chr3L 1415827 intron Ptp61F - chr3L 1415905 intron Ptp61F - chr3L_56_1415001 chr3L_1415001 RAL-819 1627 chr3L 1424763 1424773 chr3L 1430022 1430040 Rt1a 9 5263 12.5 22.0 17.2 0.5 5277 chr3L 1424763 intron Ptp61F - chr3L 1427402 intron Ptp61F - chr3L 1430040 intron Ptp61F - chr3L_9_1425001 chr3L_1425001 RAL-819 1628 chr3L 1447448 1447469 chr3L 1447659 1447680 18 209 29.0 9.5 19.2 0.9 232 chr3L 1447448 intron Ptp61F - chr3L 1447564 intron Ptp61F - chr3L 1447680 intron Ptp61F - chr3L_18_1445001 chr3L_1445001 RAL-819 1629 chr3L 1447470 1447486 chr3L 1447656 1447697 5 197 18.5 7.5 13.0 0.4 227 chr3L 1447470 intron Ptp61F - chr3L 1447584 intron Ptp61F - chr3L 1447697 intron Ptp61F - chr3L_5_1445001 chr3L_1445001 RAL-819 1630 chr3L 1463394 1463448 chr3L 1463500 1463554 35 101 14.5 15.5 15.0 2.2 160 chr3L 1463394 intron Ptp61F - chr3L 1463474 intron Ptp61F - chr3L 1463554 intron Ptp61F - chr3L_35_1460001 chr3L_1460001 RAL-819 1631 chr3L 1485713 1485743 chr3L 1486909 1486939 1360 30 1193 13.5 30.5 22.0 1.3 1226 chr3L 1485713 intron stet - chr3L 1486326 intron stet - chr3L 1486939 intron stet - chr3L_30_1485001 chr3L_1485001 RAL-819 1632 chr3L 1505976 1506030 chr3L 1513598 1513652 17.6 48 7620 17.0 17.0 17.0 2.7 7676 chr3L 1505976 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513652 intron,intron Psa +,cue - chr3L_48_1505001 chr3L_1505001 RAL-819 1633 chr3L 1639200 1639222 chr3L 1639396 1639428 17 202 18.0 11.5 14.8 1.1 228 chr3L 1639200 5` UTR metl - chr3L 1639314 intergenic metl -,Bgb + chr3L 1639428 intergenic metl -,Bgb + chr3L_17_1635001 chr3L_1635001 RAL-819 1634 chr3L 1639225 1639242 chr3L 1639395 1639446 16 201 11.5 11.0 11.2 1.3 221 chr3L 1639225 5` UTR metl - chr3L 1639336 intergenic metl -,Bgb + chr3L 1639446 intergenic metl -,Bgb + chr3L_16_1635001 chr3L_1635001 RAL-819 1635 chr3L 1661539 1661601 chr3L 1661647 1661674 51 102 9.0 11.5 10.2 4.6 135 chr3L 1661539 exon CG7971 - chr3L 1661606 intron CG7971 - chr3L 1661674 intron CG7971 - chr3L_51_1660001 chr3L_1660001 RAL-819 1636 chr3L 1740831 1740884 chr3L 1741101 1741148 pogo 39 266 15.5 23.0 19.2 1.9 317 chr3L 1740831 intron Gk + chr3L 1740990 intron Gk + chr3L 1741148 intron Gk + chr3L_39_1740001 chr3L_1740001 RAL-819 1637 chr3L 1805676 1805710 chr3L 1805873 1805898 26 196 15.5 9.0 12.2 2.0 222 chr3L 1805676 exon CG42676 + chr3L 1805787 intron CG42676 + chr3L 1805898 intron CG42676 + chr3L_26_1805001 chr3L_1805001 RAL-819 1638 chr3L 1809979 1810031 chr3L 1810195 1810246 24 216 4.5 14.0 9.2 2.4 267 chr3L 1809979 intergenic not near genes chr3L 1810112 intergenic GV1 + chr3L 1810246 intergenic GV1 + chr3L_24_1810001 chr3L_1810001 RAL-819 1639 chr3L 1882341 1882381 chr3L 1882462 1882501 16 120 10.5 9.0 9.8 1.5 160 chr3L 1882341 intron CG13937 - chr3L 1882421 intron CG13937 - chr3L 1882501 intron CG13937 - chr3L_16_1880001 chr3L_1880001 RAL-819 1640 chr3L 1922419 1922440 chr3L 1922524 1922545 10 103 20.5 23.5 22.0 0.4 126 chr3L 1922419 intron Dbx + chr3L 1922482 intron Dbx + chr3L 1922545 intron Dbx + chr3L_10_1920001 chr3L_1920001 RAL-819 1641 chr3L 1991092 1991140 chr3L 1991196 1991243 17 102 15.0 11.0 13.0 1.2 151 chr3L 1991092 intergenic not near genes chr3L 1991168 intergenic not near genes chr3L 1991243 intergenic not near genes chr3L_17_1990001 chr3L_1990001 RAL-819 1642 chr3L 2015750 2015762 chr3L 2015853 2015855 10 102 24.0 0.0 12.0 0.8 105 chr3L 2015750 intergenic not near genes chr3L 2015802 intergenic not near genes chr3L 2015855 intergenic not near genes chr3L_10_2015001 chr3L_2015001 RAL-819 1643 chr3L 2034023 2034056 chr3L 2034148 2034181 14 125 2.0 16.0 9.0 1.4 158 chr3L 2034023 intergenic not near genes chr3L 2034102 intergenic not near genes chr3L 2034181 intergenic not near genes chr3L_14_2030001 chr3L_2030001 RAL-819 1644 chr3L 2035296 2035305 chr3L 2035398 2035407 8 102 0.0 15.0 7.5 0.9 111 chr3L 2035296 intergenic not near genes chr3L 2035352 intergenic not near genes chr3L 2035407 intergenic not near genes chr3L_8_2035001 chr3L_2035001 RAL-819 1645 chr3L 2107071 2107143 chr3L 2107208 2107266 22 124 0.0 10.5 5.2 3.5 195 chr3L 2107071 intron sls - chr3L 2107168 intron sls - chr3L 2107266 intron sls - chr3L_22_2105001 chr3L_2105001 RAL-819 1646 chr3L 2108225 2108282 chr3L 2113454 2113511 copia 31 5228 14.0 15.5 14.8 2.0 5286 chr3L 2108225 intron sls - chr3L 2110868 intron sls - chr3L 2113511 intron sls - chr3L_31_2110001 chr3L_2110001 RAL-819 1647 chr3L 2139180 2139228 chr3L 2139286 2139333 35 102 18.0 11.0 14.5 2.3 153 chr3L 2139180 intron zormin - chr3L 2139256 intron zormin - chr3L 2139333 intron zormin - chr3L_35_2135001 chr3L_2135001 RAL-819 1648 chr3L 2176660 2176713 chr3L 2177094 2177147 26 433 10.5 18.0 14.2 1.7 487 chr3L 2176660 intergenic not near genes chr3L 2176904 intergenic not near genes chr3L 2177147 intergenic not near genes chr3L_26_2175001 chr3L_2175001 RAL-819 1649 chr3L 2307978 2308010 chr3L 2308109 2308126 27 129 21.5 13.5 17.5 1.5 148 chr3L 2307978 intergenic not near genes chr3L 2308052 intergenic not near genes chr3L 2308126 intergenic not near genes chr3L_27_2305001 chr3L_2305001 RAL-819 1650 chr3L 2308012 2308034 chr3L 2308108 2308165 21 127 12.0 13.0 12.5 1.6 153 chr3L 2308012 intergenic not near genes chr3L 2308088 intergenic not near genes chr3L 2308165 intergenic not near genes chr3L_21_2305001 chr3L_2305001 RAL-819 1651 chr3L 2321132 2321190 chr3L 2321234 2321285 51 99 11.0 16.0 13.5 3.5 153 chr3L 2321132 intergenic not near genes chr3L 2321208 intergenic not near genes chr3L 2321285 intergenic not near genes chr3L_51_2320001 chr3L_2320001 RAL-819 1652 chr3L 2355423 2355438 chr3L 2355636 2355643 6 210 20.0 0.5 10.2 0.5 220 chr3L 2355423 intergenic not near genes chr3L 2355533 intergenic not near genes chr3L 2355643 intergenic not near genes chr3L_6_2355001 chr3L_2355001 RAL-819 1653 chr3L 2355440 2355464 chr3L 2355635 2355667 9 210 9.0 0.5 4.8 1.6 227 chr3L 2355440 intergenic not near genes chr3L 2355554 intergenic not near genes chr3L 2355667 intergenic not near genes chr3L_9_2355001 chr3L_2355001 RAL-819 1654 chr3L 2409105 2409152 chr3L 2409207 2409254 30 100 12.5 13.0 12.8 2.2 149 chr3L 2409105 intron CG45186 + chr3L 2409180 intron CG45186 + chr3L 2409254 intron CG45186 + chr3L_30_2405001 chr3L_2405001 RAL-819 1655 chr3L 2447480 2447532 chr3L 2456661 2456713 roo 37 9176 18.0 12.5 15.2 2.3 9233 chr3L 2447480 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456713 intron CG45186 + chr3L_37_2450001 chr3L_2450001 RAL-819 1656 chr3L 2493798 2493848 chr3L 2493900 2493960 22 107 8.0 0.0 4.0 4.4 162 chr3L 2493798 intron CG45186 + chr3L 2493879 intron CG45186 + chr3L 2493960 intron CG45186 + chr3L_22_2490001 chr3L_2490001 RAL-819 1657 chr3L 2533633 2533642 chr3L 2533739 2533748 4 106 35.5 30.0 32.8 0.1 115 chr3L 2533633 intron Spn - chr3L 2533690 intron Spn - chr3L 2533748 intron Spn - chr3L_4_2530001 chr3L_2530001 RAL-819 1658 chr3L 2533644 2533680 chr3L 2533733 2533776 26 99 17.5 26.0 21.8 1.1 132 chr3L 2533644 intron Spn - chr3L 2533710 intron Spn - chr3L 2533776 intron Spn - chr3L_26_2530001 chr3L_2530001 RAL-819 1659 chr3L 2581878 2581884 chr3L 2582003 2582009 8 125 36.0 13.0 24.5 0.3 131 chr3L 2581878 intron msn - chr3L 2581944 intron msn - chr3L 2582009 intron msn - chr3L_8_2580001 chr3L_2580001 RAL-819 1660 chr3L 2581886 2581936 chr3L 2582002 2582049 46 122 13.0 12.5 12.8 3.3 163 chr3L 2581886 intron msn - chr3L 2581968 intron msn - chr3L 2582049 intron msn - chr3L_46_2580001 chr3L_2580001 RAL-819 1661 chr3L 2617239 2617262 chr3L 2617350 2617373 16 110 10.0 14.0 12.0 1.2 134 chr3L 2617239 intron Pxn - chr3L 2617306 intron Pxn - chr3L 2617373 intron Pxn - chr3L_16_2615001 chr3L_2615001 RAL-819 1662 chr3L 2626386 2626445 chr3L 2626535 2626594 38 148 9.0 12.5 10.8 3.2 208 chr3L 2626386 intron Pxn - chr3L 2626490 intron Pxn - chr3L 2626594 intron Pxn - chr3L_38_2625001 chr3L_2625001 RAL-819 1663 chr3L 2645012 2645065 chr3L 2645252 2645305 39 239 7.5 14.0 10.8 3.3 293 chr3L 2645012 intergenic CG1143 + chr3L 2645158 intergenic CG1143 + chr3L 2645305 intergenic CG1143 + chr3L_39_2645001 chr3L_2645001 RAL-819 1664 chr3L 2675681 2675711 chr3L 2675818 2675851 19 134 20.0 18.0 19.0 0.9 170 chr3L 2675681 intron Fife - chr3L 2675766 intron Fife - chr3L 2675851 intron Fife - chr3L_19_2675001 chr3L_2675001 RAL-819 1665 chr3L 2683933 2683979 chr3L 2684051 2684097 37 117 16.0 6.5 11.2 3.0 164 chr3L 2683933 intron Fife - chr3L 2684015 intron Fife - chr3L 2684097 intron Fife - chr3L_37_2680001 chr3L_2680001 RAL-819 1666 chr3L 2699501 2699555 chr3L 2699624 2699678 32 120 9.5 9.0 9.2 3.1 177 chr3L 2699501 intron Fife - chr3L 2699590 intron Fife - chr3L 2699678 intron Fife - chr3L_32_2695001 chr3L_2695001 RAL-819 1667 chr3L 2719511 2719560 chr3L 2719638 2719687 26 126 14.5 13.5 14.0 1.7 176 chr3L 2719511 3` UTR Mrtf - chr3L 2719599 3` UTR Mrtf - chr3L 2719687 3` UTR Mrtf - chr3L_26_2715001 chr3L_2715001 RAL-819 1668 chr3L 2751432 2751460 chr3L 2755752 2755780 F-element 16 4320 19.5 24.5 22.0 0.7 4348 chr3L 2751432 intron Mrtf - chr3L 2753606 intron Mrtf - chr3L 2755780 intron Mrtf - chr3L_16_2750001 chr3L_2750001 RAL-819 1669 chr3L 2835859 2835870 chr3L 2835964 2835975 9 104 27.0 25.5 26.2 0.3 116 chr3L 2835859 intron CG43444 - chr3L 2835917 intron CG43444 - chr3L 2835975 intron CG43444 - chr3L_9_2835001 chr3L_2835001 RAL-819 1670 chr3L 2863771 2863813 chr3L 2863876 2863898 19 103 7.0 5.0 6.0 2.7 127 chr3L 2863771 intron CG43444 - chr3L 2863834 intron CG43444 - chr3L 2863898 intron CG43444 - chr3L_19_2860001 chr3L_2860001 RAL-819 1671 chr3L 2895857 2895861 chr3L 2895966 2895970 6 109 31.5 7.0 19.2 0.3 113 chr3L 2895857 intron Shab + chr3L 2895914 intron Shab + chr3L 2895970 intron Shab + chr3L_6_2895001 chr3L_2895001 RAL-819 1672 chr3L 2895863 2895894 chr3L 2895964 2896003 29 106 15.5 6.0 10.8 2.5 140 chr3L 2895863 intron Shab + chr3L 2895933 intron Shab + chr3L 2896003 intron Shab + chr3L_29_2895001 chr3L_2895001 RAL-819 1673 chr3L 2908128 2908158 chr3L 2908254 2908284 29 125 21.5 15.0 18.2 1.5 156 chr3L 2908128 intron Shab + chr3L 2908206 intron Shab + chr3L 2908284 intron Shab + chr3L_29_2905001 chr3L_2905001 RAL-819 1674 chr3L 2908159 2908176 chr3L 2908250 2908302 8 121 14.0 13.5 13.8 0.5 143 chr3L 2908159 intron Shab + chr3L 2908230 intron Shab + chr3L 2908302 intron Shab + chr3L_8_2905001 chr3L_2905001 RAL-819 1675 chr3L 2911749 2911810 chr3L 2911869 2911891 34 115 10.5 11.5 11.0 2.8 142 chr3L 2911749 intron Shab + chr3L 2911820 intron Shab + chr3L 2911891 intron Shab + chr3L_34_2910001 chr3L_2910001 RAL-819 1676 chr3L 2927823 2927869 chr3L 2936114 2936171 Tirant 21 8300 8.5 9.5 9.0 2.1 8348 chr3L 2927823 intron Shab + chr3L 2931997 intron Shab + chr3L 2936171 intron Shab + chr3L_21_2930001 chr3L_2930001 RAL-819 1677 chr3L 2966698 2966724 chr3L 2974148 2974174 mdg1 12 7450 12.5 8.5 10.5 1.0 7476 chr3L 2966698 intergenic not near genes chr3L 2970436 intergenic not near genes chr3L 2974174 intergenic not near genes chr3L_12_2970001 chr3L_2970001 RAL-819 1678 chr3L 2987684 2987723 chr3L 2987791 2987830 33 106 15.0 0.5 7.8 3.7 146 chr3L 2987684 intergenic not near genes chr3L 2987757 intergenic not near genes chr3L 2987830 intergenic not near genes chr3L_33_2985001 chr3L_2985001 RAL-819 1679 chr3L 3030953 3030962 chr3L 3031058 3031066 12 104 7.5 9.0 8.2 1.3 113 chr3L 3030953 intergenic not near genes chr3L 3031010 intergenic not near genes chr3L 3031066 intergenic not near genes chr3L_12_3030001 chr3L_3030001 RAL-819 1680 chr3L 3040312 3040328 chr3L 3042116 3042136 S-element 9 1810 23.5 0.5 12.0 0.7 1824 chr3L 3040312 3` UTR CG2162 + chr3L 3041224 intergenic not near genes chr3L 3042136 intergenic Jafrac2 + chr3L_9_3040001 chr3L_3040001 RAL-819 1681 chr3L 3040329 3040352 chr3L 3042113 3042120 S-element 9 1794 15.0 0.5 7.8 1.0 1791 chr3L 3040329 3` UTR CG2162 + chr3L 3041224 intergenic not near genes chr3L 3042120 intergenic Jafrac2 + chr3L_9_3040001 chr3L_3040001 RAL-819 1682 chr3L 3050871 3050883 chr3L 3050983 3050995 9 112 16.0 8.5 12.2 0.7 124 chr3L 3050871 intron CG32485 + chr3L 3050933 intron CG32485 + chr3L 3050995 intron CG32485 + chr3L_9_3050001 chr3L_3050001 RAL-819 1683 chr3L 3051718 3051754 chr3L 3051985 3052007 pogo 28 265 18.5 9.5 14.0 1.9 289 chr3L 3051718 3` UTR CG32485 + chr3L 3051862 intergenic CG32485 + chr3L 3052007 intergenic CG32485 + chr3L_28_3050001 chr3L_3050001 RAL-819 1684 chr3L 3061272 3061284 chr3L 3069870 3069892 Tirant 11 8605 31.0 18.0 24.5 0.4 8620 chr3L 3061272 intron CG32486 - chr3L 3065582 intron CG32486 - chr3L 3069892 intron CG32486 - chr3L_11_3065001 chr3L_3065001 RAL-819 1685 chr3L 3061287 3061313 chr3L 3069865 3069905 Tirant 22 8597 12.0 15.0 13.5 1.5 8618 chr3L 3061287 intron CG32486 - chr3L 3065596 intron CG32486 - chr3L 3069905 intron CG32486 - chr3L_22_3065001 chr3L_3065001 RAL-819 1686 chr3L 3134637 3134694 chr3L 3135285 3135321 30 642 11.5 13.5 12.5 2.2 684 chr3L 3134637 intron CG11537 - chr3L 3134979 intron CG11537 - chr3L 3135321 intron CG11537 - chr3L_30_3130001 chr3L_3130001 RAL-819 1687 chr3L 3138951 3139010 chr3L 3139065 3139124 53 112 9.5 16.5 13.0 3.8 173 chr3L 3138951 intron CG11537 - chr3L 3139038 intron CG11537 - chr3L 3139124 intron CG11537 - chr3L_53_3135001 chr3L_3135001 RAL-819 1688 chr3L 3259605 3259620 chr3L 3259714 3259724 8 111 27.5 12.5 20.0 0.4 119 chr3L 3259605 intron ckd + chr3L 3259664 intron ckd + chr3L 3259724 intron ckd + chr3L_8_3255001 chr3L_3255001 RAL-819 1689 chr3L 3259622 3259832 chr3L 3259712 3259957 33 113 5.5 12.0 8.8 3.4 335 chr3L 3259622 intron ckd + chr3L 3259790 intron ckd + chr3L 3259957 intron ckd + chr3L_33_3255001 chr3L_3255001 RAL-819 1690 chr3L 3281414 3281471 chr3L 3281935 3281977 Doc 31 518 11.5 13.5 12.5 2.3 563 chr3L 3281414 intron CG12017 + chr3L 3281696 intron CG12017 + chr3L 3281977 intron CG12017 + chr3L_31_3280001 chr3L_3280001 RAL-819 1691 chr3L 3314111 3314169 chr3L 3314270 3314318 100 156 28.5 26.5 27.5 3.5 207 chr3L 3314111 intergenic ZnT63C +,Drsl2 + chr3L 3314214 intergenic Drsl2 +,ZnT63C + chr3L 3314318 intergenic Drsl2 +,ZnT63C + chr3L_100_3310001 chr3L_3310001 RAL-819 1692 chr3L 3312266 3312285 chr3L 3315522 3315541 14 3257 92.5 96.0 94.2 0.1 3275 chr3L 3312266 exon ZnT63C + chr3L 3313904 3` UTR ZnT63C + chr3L 3315541 intergenic Drsl4 +,Drsl3 + chr3L_14_3310001 chr3L_3310001 RAL-819 1693 chr3L 3312265 3312307 chr3L 3315542 3315582 43 3270 100.5 94.0 97.2 0.4 3317 chr3L 3312265 exon ZnT63C + chr3L 3313924 3` UTR ZnT63C + chr3L 3315582 intergenic Drsl4 +,Drsl3 + chr3L_43_3310001 chr3L_3310001 RAL-819 1694 chr3L 3315952 3316010 chr3L 3316078 3316122 17 120 6.5 8.0 7.2 2.1 170 chr3L 3315952 intergenic Drsl4 + chr3L 3316037 intergenic Drsl4 + chr3L 3316122 intergenic Drsl4 + chr3L_17_3315001 chr3L_3315001 RAL-819 1695 chr3L 3389379 3389384 chr3L 3389482 3389487 7 102 19.0 18.5 18.8 0.4 108 chr3L 3389379 intergenic not near genes chr3L 3389433 intergenic not near genes chr3L 3389487 intergenic not near genes chr3L_7_3385001 chr3L_3385001 RAL-819 1696 chr3L 3389387 3389433 chr3L 3389480 3389525 40 95 9.0 18.5 13.8 2.7 138 chr3L 3389387 intergenic not near genes chr3L 3389456 intergenic not near genes chr3L 3389525 intergenic not near genes chr3L_40_3385001 chr3L_3385001 RAL-819 1697 chr3L 3470131 3470184 chr3L 3470232 3470285 32 101 0.5 11.5 6.0 4.6 154 chr3L 3470131 intron CG14971 - chr3L 3470208 intron CG14971 - chr3L 3470285 intron CG14971 - chr3L_32_3470001 chr3L_3470001 RAL-819 1698 chr3L 3475047 3475107 chr3L 3475517 3475560 jockey 34 462 6.0 12.0 9.0 3.4 513 chr3L 3475047 intron CG42324 + chr3L 3475304 intron CG42324 + chr3L 3475560 intron CG42324 + chr3L_34_3475001 chr3L_3475001 RAL-819 1699 chr3L 3483519 3483570 chr3L 3483751 3483802 33 231 11.5 9.5 10.5 2.9 283 chr3L 3483519 intron CG42324 + chr3L 3483660 intron CG42324 + chr3L 3483802 intron CG42324 + chr3L_33_3480001 chr3L_3480001 RAL-819 1700 chr3L 3484260 3484318 chr3L 3484377 3484435 41 116 10.0 9.5 9.8 3.8 175 chr3L 3484260 intron,exon CG42324 +,CG43074 - chr3L 3484348 intron,exon CG42324 +,CG43074 - chr3L 3484435 intron,intron CG42324 +,CG43074 - chr3L_41_3480001 chr3L_3480001 RAL-819 1701 chr3L 3494173 3494205 chr3L 3494275 3494307 27 102 1.0 14.5 7.8 3.1 134 chr3L 3494173 intron CG42324 + chr3L 3494240 intron CG42324 + chr3L 3494307 intron CG42324 + chr3L_27_3490001 chr3L_3490001 RAL-819 1702 chr3L 3503976 3503988 chr3L 3504109 3504121 10 133 0.0 15.5 7.8 1.1 145 chr3L 3503976 intron CG42324 + chr3L 3504048 intron CG42324 + chr3L 3504121 intron CG42324 + chr3L_10_3500001 chr3L_3500001 RAL-819 1703 chr3L 3548696 3548715 chr3L 3548843 3548861 7 147 9.5 9.5 9.5 0.7 165 chr3L 3548696 intron Eip63E + chr3L 3548778 intron Eip63E + chr3L 3548861 intron Eip63E + chr3L_7_3545001 chr3L_3545001 RAL-819 1704 chr3L 3566377 3566408 chr3L 3566483 3566516 26 107 23.0 10.5 16.8 1.5 139 chr3L 3566377 intron Eip63E + chr3L 3566446 intron Eip63E + chr3L 3566516 intron Eip63E + chr3L_26_3565001 chr3L_3565001 RAL-819 1705 chr3L 3566411 3566424 chr3L 3566479 3566532 17 104 14.0 9.0 11.5 1.4 121 chr3L 3566411 intron Eip63E + chr3L 3566472 intron Eip63E + chr3L 3566532 intron Eip63E + chr3L_17_3565001 chr3L_3565001 RAL-819 1706 chr3L 3601274 3601330 chr3L 3606610 3606620 copia 34 5332 13.5 15.5 14.5 2.2 5346 chr3L 3601274 intron Eip63E + chr3L 3603947 intron Eip63E + chr3L 3606620 intron Eip63E + chr3L_34_3600001 chr3L_3600001 RAL-819 1707 chr3L 3655801 3655824 chr3L 3655905 3655928 18 102 22.0 37.5 29.8 0.6 127 chr3L 3655801 intergenic not near genes chr3L 3655864 intergenic not near genes chr3L 3655928 intergenic not near genes chr3L_18_3655001 chr3L_3655001 RAL-819 1708 chr3L 3656976 3657030 chr3L 3657079 3657133 43 101 17.0 5.0 11.0 3.6 157 chr3L 3656976 intergenic not near genes chr3L 3657054 intergenic not near genes chr3L 3657133 intergenic not near genes chr3L_43_3655001 chr3L_3655001 RAL-819 1709 chr3L 3763734 3763739 chr3L 3763840 3763845 5 106 28.5 0.0 14.2 0.3 111 chr3L 3763734 intron CG32264 - chr3L 3763790 intron CG32264 - chr3L 3763845 intron CG32264 - chr3L_5_3760001 chr3L_3760001 RAL-819 1710 chr3L 3763742 3763766 chr3L 3763838 3763851 15 101 17.0 0.0 8.5 1.6 109 chr3L 3763742 intron CG32264 - chr3L 3763796 intron CG32264 - chr3L 3763851 intron CG32264 - chr3L_15_3760001 chr3L_3760001 RAL-819 1711 chr3L 3766713 3766757 chr3L 3766824 3766833 23 109 10.5 0.0 5.2 3.7 120 chr3L 3766713 intron CG32264 - chr3L 3766773 intron CG32264 - chr3L 3766833 intron CG32264 - chr3L_23_3765001 chr3L_3765001 RAL-819 1712 chr3L 3773249 3773290 chr3L 3773366 3773407 28 115 12.5 19.5 16.0 1.6 158 chr3L 3773249 intron CG32264 - chr3L 3773328 intron CG32264 - chr3L 3773407 intron CG32264 - chr3L_28_3770001 chr3L_3770001 RAL-819 1713 chr3L 3773604 3773616 chr3L 3773708 3773708 5 102 17.0 0.0 8.5 0.5 104 chr3L 3773604 intron CG32264 - chr3L 3773656 intron CG32264 - chr3L 3773708 intron CG32264 - chr3L_5_3770001 chr3L_3770001 RAL-819 1714 chr3L 3773629 3773671 chr3L 3773707 3773777 7 101 0.0 0.0 0.0 7.0 148 chr3L 3773629 intron CG32264 - chr3L 3773703 intron CG32264 - chr3L 3773777 intron CG32264 - chr3L_7_3770001 chr3L_3770001 RAL-819 1715 chr3L 3783247 3783290 chr3L 3783349 3783392 13 100 10.0 17.0 13.5 0.9 145 chr3L 3783247 intron CG32264 - chr3L 3783320 intron CG32264 - chr3L 3783392 intron CG32264 - chr3L_13_3780001 chr3L_3780001 RAL-819 1716 chr3L 3798013 3798070 chr3L 3798118 3798162 46 103 8.0 6.5 7.2 5.6 149 chr3L 3798013 intron CG32264 - chr3L 3798088 intron CG32264 - chr3L 3798162 intron CG32264 - chr3L_46_3795001 chr3L_3795001 RAL-819 1717 chr3L 3815026 3815081 chr3L 3815133 3815162 30 104 8.0 6.0 7.0 3.8 136 chr3L 3815026 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815094 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815162 intron,intron Scsalpha +,CR43932 - chr3L_30_3815001 chr3L_3815001 RAL-819 1718 chr3L 3833714 3833769 chr3L 3833980 3834035 pogo 40 265 13.5 7.5 10.5 3.5 321 chr3L 3833714 intron enc + chr3L 3833874 intron enc + chr3L 3834035 intron enc + chr3L_40_3830001 chr3L_3830001 RAL-819 1719 chr3L 4000740 4000772 chr3L 4000852 4000874 4 110 25.5 0.0 12.8 0.3 134 chr3L 4000740 intergenic not near genes chr3L 4000807 intergenic not near genes chr3L 4000874 intergenic not near genes chr3L_4_4000001 chr3L_4000001 RAL-819 1720 chr3L 4015709 4015765 chr3L 4015817 4015873 56 106 9.0 7.5 8.2 6.1 164 chr3L 4015709 intergenic not near genes chr3L 4015791 intergenic not near genes chr3L 4015873 intergenic not near genes chr3L_56_4015001 chr3L_4015001 RAL-819 1721 chr3L 4038010 4038015 chr3L 4038117 4038122 5 107 19.0 9.5 14.2 0.3 112 chr3L 4038010 3` UTR CG11593 - chr3L 4038066 3` UTR CG11593 - chr3L 4038122 3` UTR CG11593 - chr3L_5_4035001 chr3L_4035001 RAL-819 1722 chr3L 4038023 4038068 chr3L 4038115 4038159 35 100 14.5 9.5 12.0 2.7 136 chr3L 4038023 3` UTR CG11593 - chr3L 4038091 3` UTR CG11593 - chr3L 4038159 3` UTR CG11593 - chr3L_35_4035001 chr3L_4035001 RAL-819 1723 chr3L 4080471 4080498 chr3L 4080562 4080595 15 104 0.5 22.0 11.2 1.2 124 chr3L 4080471 intron Gad1 - chr3L 4080533 intron Gad1 - chr3L 4080595 intron Gad1 - chr3L_15_4080001 chr3L_4080001 RAL-819 1724 chr3L 4099456 4099491 chr3L 4099562 4099597 25 106 10.5 9.0 9.8 2.3 141 chr3L 4099456 intron CG14995 - chr3L 4099526 intron CG14995 - chr3L 4099597 intron CG14995 - chr3L_25_4095001 chr3L_4095001 RAL-819 1725 chr3L 4146802 4146824 chr3L 4146902 4146931 20 106 0.0 16.0 8.0 2.2 129 chr3L 4146802 intergenic not near genes chr3L 4146866 intergenic not near genes chr3L 4146931 intergenic not near genes chr3L_20_4145001 chr3L_4145001 RAL-819 1726 chr3L 4146825 4146839 chr3L 4146898 4146946 9 103 0.0 14.5 7.2 1.1 121 chr3L 4146825 intergenic not near genes chr3L 4146886 intergenic not near genes chr3L 4146946 intergenic not near genes chr3L_9_4145001 chr3L_4145001 RAL-819 1727 chr3L 4170148 4170165 chr3L 4170251 4170266 11 103 4.0 19.5 11.8 0.9 118 chr3L 4170148 intergenic Ero1L + chr3L 4170207 intergenic Ero1L + chr3L 4170266 intergenic Ero1L + chr3L_11_4170001 chr3L_4170001 RAL-819 1728 chr3L 4188953 4188959 chr3L 23730762 23730763 4 19541808 29.5 52.5 41.0 0.1 19541810 chr3L 4188953 intron,intron CG18675 +,tipE + chr3L 13959858 intron CG32137 + chr3L 23730763 intergenic not near genes chr3L_4_13955001 chr3L_13955001 RAL-819 1729 chr3L 4213298 4213359 chr3L 4213407 4213468 40 103 6.5 0.5 3.5 8.9 170 chr3L 4213298 intron CG43367 + chr3L 4213383 intron CG43367 + chr3L 4213468 intron CG43367 + chr3L_40_4210001 chr3L_4210001 RAL-819 1730 chr3L 4214512 4214549 chr3L 4214679 4214716 22 166 11.5 19.5 15.5 1.3 204 chr3L 4214512 intron CG43367 + chr3L 4214614 intron CG43367 + chr3L 4214716 intron CG43367 + chr3L_22_4210001 chr3L_4210001 RAL-819 1731 chr3L 4232279 4232327 chr3L 4232378 4232417 33 96 18.0 15.0 16.5 1.9 138 chr3L 4232279 intron ImpL2 - chr3L 4232348 intron ImpL2 - chr3L 4232417 intron ImpL2 - chr3L_33_4230001 chr3L_4230001 RAL-819 1732 chr3L 4238712 4238748 chr3L 4238838 4238874 30 126 4.0 0.0 2.0 10.0 162 chr3L 4238712 intergenic not near genes chr3L 4238793 intergenic not near genes chr3L 4238874 intergenic not near genes chr3L_30_4235001 chr3L_4235001 RAL-819 1733 chr3L 4239269 4239307 chr3L 4534201 4534201 4 294920 11.0 53.0 32.0 0.1 294932 chr3L 4239269 intergenic not near genes chr3L 4386735 intron slow + chr3L 4534201 intron CG11353 + chr3L_4_4385001 chr3L_4385001 RAL-819 1734 chr3L 4328717 4328763 chr3L 4336235 4336279 412 37 7521 9.5 13.0 11.2 3.0 7562 chr3L 4328717 intron Cip4 - chr3L 4332498 intron Cip4 - chr3L 4336279 exon Cip4 - chr3L_37_4330001 chr3L_4330001 RAL-819 1735 chr3L 4341331 4341335 chr3L 21448026 21448026 6 17106694 50.5 59.5 55.0 0.1 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_6_12890001 chr3L_12890001 RAL-819 1736 chr3L 4440729 4440759 chr3L 4440832 4440865 14 104 12.0 0.5 6.2 1.9 136 chr3L 4440729 intergenic not near genes chr3L 4440797 intergenic not near genes chr3L 4440865 intergenic not near genes chr3L_14_4440001 chr3L_4440001 RAL-819 1737 chr3L 4444077 4444136 chr3L 4444182 4444241 34 103 8.0 11.0 9.5 3.2 164 chr3L 4444077 intergenic not near genes chr3L 4444159 intergenic not near genes chr3L 4444241 intergenic not near genes chr3L_34_4440001 chr3L_4440001 RAL-819 1738 chr3L 4472632 4472654 chr3L 4472755 4472782 6 126 0.0 15.0 7.5 0.7 150 chr3L 4472632 intergenic CG32248 +,CG11349 + chr3L 4472707 intergenic CG32248 +,CG11349 + chr3L 4472782 intergenic CG11349 +,CG32248 + chr3L_6_4470001 chr3L_4470001 RAL-819 1739 chr3L 4599515 4599533 chr3L 4599671 4599695 14 161 0.0 23.5 11.8 1.1 180 chr3L 4599515 intron Src64B - chr3L 4599605 intron Src64B - chr3L 4599695 intron Src64B - chr3L_14_4595001 chr3L_4595001 RAL-819 1740 chr3L 4699269 4699316 chr3L 4699374 4699421 29 104 12.5 15.5 14.0 1.9 152 chr3L 4699269 intron RhoGEF64C + chr3L 4699345 intron RhoGEF64C + chr3L 4699421 intron RhoGEF64C + chr3L_29_4695001 chr3L_4695001 RAL-819 1741 chr3L 4748682 4748691 chr3L 4748798 4748807 7 116 28.5 14.0 21.2 0.3 125 chr3L 4748682 intron RhoGEF64C + chr3L 4748744 intron RhoGEF64C + chr3L 4748807 intron RhoGEF64C + chr3L_7_4745001 chr3L_4745001 RAL-819 1742 chr3L 4748693 4748732 chr3L 4748794 4748841 26 112 9.0 13.0 11.0 2.2 148 chr3L 4748693 intron RhoGEF64C + chr3L 4748767 intron RhoGEF64C + chr3L 4748841 intron RhoGEF64C + chr3L_26_4745001 chr3L_4745001 RAL-819 1743 chr3L 4784938 4784986 chr3L 4785167 4785212 35 228 3.0 12.0 7.5 4.1 274 chr3L 4784938 intron RhoGEF64C + chr3L 4785075 intron RhoGEF64C + chr3L 4785212 intron RhoGEF64C + chr3L_35_4785001 chr3L_4785001 RAL-819 1744 chr3L 4789480 4789501 chr3L 4789555 4789573 9 91 9.5 18.0 13.8 0.6 93 chr3L 4789480 exon RhoGEF64C + chr3L 4789526 exon RhoGEF64C + chr3L 4789573 exon RhoGEF64C + chr3L_9_4785001 chr3L_4785001 RAL-819 1745 chr3L 4824824 4824830 chr3L 4824937 4824943 4 113 22.5 0.0 11.2 0.3 119 chr3L 4824824 intron Dhc64C - chr3L 4824884 intron Dhc64C - chr3L 4824943 intron Dhc64C - chr3L_4_4820001 chr3L_4820001 RAL-819 1746 chr3L 4840365 4840409 chr3L 4840499 4840526 7 126 4.0 0.0 2.0 2.3 161 chr3L 4840365 intergenic CG13707 - chr3L 4840446 intergenic CG13707 - chr3L 4840526 intergenic CG13707 - chr3L_7_4840001 chr3L_4840001 RAL-819 1747 chr3L 4858282 4858290 chr3L 4858397 4858405 6 114 34.5 19.0 26.8 0.2 123 chr3L 4858282 intergenic not near genes chr3L 4858344 intergenic not near genes chr3L 4858405 intergenic not near genes chr3L_6_4855001 chr3L_4855001 RAL-819 1748 chr3L 4858292 4858330 chr3L 4858394 4858437 36 109 14.5 18.0 16.2 2.1 145 chr3L 4858292 intergenic not near genes chr3L 4858364 intergenic not near genes chr3L 4858437 intergenic not near genes chr3L_36_4855001 chr3L_4855001 RAL-819 1749 chr3L 4858332 4858335 chr3L 4858391 4858450 4 96 12.0 15.5 13.8 0.3 118 chr3L 4858332 intergenic not near genes chr3L 4858391 intergenic not near genes chr3L 4858450 intergenic not near genes chr3L_4_4855001 chr3L_4855001 RAL-819 1750 chr3L 4901103 4901161 chr3L 4907318 4907376 diver 27 6212 10.5 10.5 10.5 2.3 6273 chr3L 4901103 intergenic CG13704 + chr3L 4904240 intergenic not near genes chr3L 4907376 intergenic not near genes chr3L_27_4900001 chr3L_4900001 RAL-819 1751 chr3L 4907958 4907964 chr3L 4908059 4908065 5 101 22.5 7.5 15.0 0.3 107 chr3L 4907958 intergenic not near genes chr3L 4908012 intergenic not near genes chr3L 4908065 intergenic not near genes chr3L_5_4905001 chr3L_4905001 RAL-819 1752 chr3L 5013833 5013838 chr3L 5013923 5013940 8 98 30.0 19.0 24.5 0.3 107 chr3L 5013833 intron Con - chr3L 5013886 intron Con - chr3L 5013940 intron Con - chr3L_8_5010001 chr3L_5010001 RAL-819 1753 chr3L 5014683 5014695 chr3L 5014786 5014798 5 103 19.5 6.5 13.0 0.4 115 chr3L 5014683 intron Con - chr3L 5014740 intron Con - chr3L 5014798 intron Con - chr3L_5_5010001 chr3L_5010001 RAL-819 1754 chr3L 5034137 5034158 chr3L 5043314 5043330 roo 17 9175 22.0 11.5 16.8 1.0 9193 chr3L 5034137 intron Con - chr3L 5038734 intron Con - chr3L 5043330 intron Con - chr3L_17_5035001 chr3L_5035001 RAL-819 1755 chr3L 5034165 5034191 chr3L 5043310 5043368 roo 16 9174 10.5 8.5 9.5 1.5 9203 chr3L 5034165 intron Con - chr3L 5038766 intron Con - chr3L 5043368 intron Con - chr3L_16_5035001 chr3L_5035001 RAL-819 1756 chr3L 5045433 5045440 chr3L 5050239 5050246 Doc 5 4806 29.5 13.0 21.2 0.2 4813 chr3L 5045433 intron Con - chr3L 5047840 intron Con - chr3L 5050246 intron Con - chr3L_5_5045001 chr3L_5045001 RAL-819 1757 chr3L 5045442 5045483 chr3L 5050236 5050251 Doc 19 4803 14.5 11.5 13.0 1.4 4809 chr3L 5045442 intron Con - chr3L 5047846 intron Con - chr3L 5050251 intron Con - chr3L_19_5045001 chr3L_5045001 RAL-819 1758 chr3L 5059910 5059968 chr3L 5060023 5060081 36 112 7.5 7.5 7.5 4.2 171 chr3L 5059910 intron Con - chr3L 5059996 intron Con - chr3L 5060081 intron Con - chr3L_36_5055001 chr3L_5055001 RAL-819 1759 chr3L 5064652 5064703 chr3L 5064756 5064807 16 102 5.5 1.5 3.5 3.6 155 chr3L 5064652 intron Con - chr3L 5064730 intron Con - chr3L 5064807 intron Con - chr3L_16_5060001 chr3L_5060001 RAL-819 1760 chr3L 5066283 5066327 chr3L 5066407 5066451 32 123 4.0 11.5 7.8 3.6 168 chr3L 5066283 intron Con - chr3L 5066367 intron Con - chr3L 5066451 intron Con - chr3L_32_5065001 chr3L_5065001 RAL-819 1761 chr3L 5104457 5104506 chr3L 5124616 5124665 39 20157 8.5 15.5 12.0 3.0 20208 chr3L 5104457 intergenic not near genes chr3L 5114561 intergenic not near genes chr3L 5124665 intergenic not near genes chr3L_39_5110001 chr3L_5110001 RAL-819 1762 chr3L 5189828 5189876 chr3L 5189966 5190020 28 143 9.0 8.5 8.8 2.9 192 chr3L 5189828 intron shep - chr3L 5189924 intron shep - chr3L 5190020 intron shep - chr3L_28_5185001 chr3L_5185001 RAL-819 1763 chr3L 5209521 5209570 chr3L 5213868 5213909 33 4340 19.5 67.5 43.5 0.7 4388 chr3L 5209521 intron shep - chr3L 5211715 intron shep - chr3L 5213909 intron shep - chr3L_33_5210001 chr3L_5210001 RAL-819 1764 chr3L 5212214 5212220 chr3L 5212322 5212328 5 108 44.0 10.5 27.2 0.2 114 chr3L 5212214 intron shep - chr3L 5212271 intron shep - chr3L 5212328 intron shep - chr3L_5_5210001 chr3L_5210001 RAL-819 1765 chr3L 5212221 5212270 chr3L 5212321 5212378 46 104 14.5 10.0 12.2 3.5 157 chr3L 5212221 intron shep - chr3L 5212300 intron shep - chr3L 5212378 intron shep - chr3L_46_5210001 chr3L_5210001 RAL-819 1766 chr3L 5209540 5209596 chr3L 5215444 5215495 25 5900 8.5 76.5 42.5 0.6 5955 chr3L 5209540 intron shep - chr3L 5212518 intron shep - chr3L 5215495 intron shep - chr3L_25_5210001 chr3L_5210001 RAL-819 1767 chr3L 5223397 5223428 chr3L 5223504 5223535 10 105 23.5 10.5 17.0 0.6 138 chr3L 5223397 intron shep - chr3L 5223466 intron shep - chr3L 5223535 intron shep - chr3L_10_5220001 chr3L_5220001 RAL-819 1768 chr3L 5223433 5223451 chr3L 5223500 5223536 6 96 11.5 8.0 9.8 0.6 103 chr3L 5223433 intron shep - chr3L 5223484 intron shep - chr3L 5223536 intron shep - chr3L_6_5220001 chr3L_5220001 RAL-819 1769 chr3L 5225037 5225101 chr3L 5225174 5225227 4 132 0.0 0.0 0.0 4.0 190 chr3L 5225037 intron shep - chr3L 5225132 intron shep - chr3L 5225227 intron shep - chr3L_4_5225001 chr3L_5225001 RAL-819 1770 chr3L 5251846 5251871 chr3L 5251945 5251975 15 103 0.0 19.0 9.5 1.4 129 chr3L 5251846 intron shep - chr3L 5251910 intron shep - chr3L 5251975 intron shep - chr3L_15_5250001 chr3L_5250001 RAL-819 1771 chr3L 5252680 5252680 chr3L 9618326 9618336 4 4365651 39.5 56.0 47.8 0.1 4365656 chr3L 5252680 intron shep - chr3L 7435508 intron CG42458 + chr3L 9618336 exon LanB2 + chr3L_4_7435001 chr3L_7435001 RAL-819 1772 chr3L 5261143 5261182 chr3L 5261246 5261269 19 99 18.0 7.0 12.5 1.4 126 chr3L 5261143 intron shep - chr3L 5261206 intron shep - chr3L 5261269 intron shep - chr3L_19_5260001 chr3L_5260001 RAL-819 1773 chr3L 5271170 5271188 chr3L 5271273 5271291 9 101 0.0 1.5 0.8 5.0 121 chr3L 5271170 intron shep - chr3L 5271230 intron shep - chr3L 5271291 intron shep - chr3L_9_5270001 chr3L_5270001 RAL-819 1774 chr3L 5271190 5271201 chr3L 5271271 5271282 8 97 0.0 1.5 0.8 4.4 92 chr3L 5271190 intron shep - chr3L 5271236 intron shep - chr3L 5271282 intron shep - chr3L_8_5270001 chr3L_5270001 RAL-819 1775 chr3L 5299147 5299165 chr3L 5306598 5306616 Quasimodo 17 7451 13.0 4.5 8.8 1.7 7469 chr3L 5299147 intergenic not near genes chr3L 5302882 intergenic not near genes chr3L 5306616 intergenic not near genes chr3L_17_5300001 chr3L_5300001 RAL-819 1776 chr3L 5306648 5306666 chr3L 5306762 5306781 14 114 4.5 6.5 5.5 2.2 133 chr3L 5306648 intergenic not near genes chr3L 5306714 intergenic not near genes chr3L 5306781 intergenic not near genes chr3L_14_5305001 chr3L_5305001 RAL-819 1777 chr3L 5327435 5327478 chr3L 5327545 5327588 27 109 13.5 6.5 10.0 2.5 153 chr3L 5327435 intergenic not near genes chr3L 5327512 intergenic not near genes chr3L 5327588 intergenic not near genes chr3L_27_5325001 chr3L_5325001 RAL-819 1778 chr3L 5346345 5346402 chr3L 5346462 5346472 50 113 13.5 11.0 12.2 3.8 127 chr3L 5346345 5` UTR lama - chr3L 5346408 5` UTR lama - chr3L 5346472 5` UTR lama - chr3L_50_5345001 chr3L_5345001 RAL-819 1779 chr3L 5351083 5351135 chr3L 5351193 5351245 39 108 9.0 13.0 11.0 3.2 162 chr3L 5351083 intron lama - chr3L 5351164 intron lama - chr3L 5351245 intron lama - chr3L_39_5350001 chr3L_5350001 RAL-819 1780 chr3L 5376013 5376044 chr3L 5376117 5376147 17 103 0.0 9.5 4.8 2.9 134 chr3L 5376013 intergenic not near genes chr3L 5376080 intergenic not near genes chr3L 5376147 intergenic not near genes chr3L_17_5375001 chr3L_5375001 RAL-819 1781 chr3L 5388175 5388233 chr3L 5388524 5388546 51 346 11.5 11.5 11.5 4.1 371 chr3L 5388175 intergenic not near genes chr3L 5388360 intergenic not near genes chr3L 5388546 intergenic not near genes chr3L_51_5385001 chr3L_5385001 RAL-819 1782 chr3L 5393451 5393457 chr3L 5393638 5393644 6 187 13.5 4.0 8.8 0.6 193 chr3L 5393451 intergenic not near genes chr3L 5393548 intergenic not near genes chr3L 5393644 intergenic not near genes chr3L_6_5390001 chr3L_5390001 RAL-819 1783 chr3L 5399567 5399576 chr3L 5399679 5399688 6 112 0.5 0.0 0.2 5.0 121 chr3L 5399567 intergenic not near genes chr3L 5399628 intergenic not near genes chr3L 5399688 intergenic not near genes chr3L_6_5395001 chr3L_5395001 RAL-819 1784 chr3L 5389070 5389081 chr3L 5447217 5447221 5 58138 35.0 60.0 47.5 0.1 58151 chr3L 5389070 intergenic not near genes chr3L 5418146 intergenic not near genes chr3L 5447221 intergenic not near genes chr3L_5_5415001 chr3L_5415001 RAL-819 1785 chr3L 5482935 5483147 chr3L 5483169 5483359 5 263 77.5 77.5 77.5 0.1 424 chr3L 5482935 exon CG4835 + chr3L 5483147 exon CG4835 + chr3L 5483359 exon CG4835 + chr3L_5_5480001 chr3L_5480001 RAL-819 1786 chr3L 5498372 5498426 chr3L 5498480 5498528 18 107 0.0 10.5 5.2 2.9 156 chr3L 5498372 exon blanks - chr3L 5498450 exon blanks - chr3L 5498528 exon blanks - chr3L_18_5495001 chr3L_5495001 RAL-819 1787 chr3L 5537700 5537714 chr3L 5538067 5538072 jockey 8 365 19.5 16.5 18.0 0.4 372 chr3L 5537700 intergenic not near genes chr3L 5537886 intergenic not near genes chr3L 5538072 intergenic CG10625 - chr3L_8_5535001 chr3L_5535001 RAL-819 1788 chr3L 5537721 5537750 chr3L 5538061 5538117 jockey 16 359 9.0 15.0 12.0 1.2 396 chr3L 5537721 intergenic not near genes chr3L 5537919 intergenic CG10625 - chr3L 5538117 intergenic CG10625 - chr3L_16_5535001 chr3L_5535001 RAL-819 1789 chr3L 5613468 5613502 chr3L 5613620 5613654 24 152 11.5 9.5 10.5 2.1 186 chr3L 5613468 intergenic not near genes chr3L 5613561 intergenic not near genes chr3L 5613654 intergenic not near genes chr3L_24_5610001 chr3L_5610001 RAL-819 1790 chr3L 5666266 5666318 chr3L 5666381 5666427 5 110 0.0 10.0 5.0 0.8 161 chr3L 5666266 intron sif + chr3L 5666346 intron sif + chr3L 5666427 intron sif + chr3L_5_5665001 chr3L_5665001 RAL-819 1791 chr3L 5727150 5727157 chr3L 5727648 5727655 7 497 27.5 7.0 17.2 0.4 505 chr3L 5727150 intron sif + chr3L 5727402 intron sif + chr3L 5727655 intron sif + chr3L_7_5725001 chr3L_5725001 RAL-819 1792 chr3L 5727158 5727199 chr3L 5727646 5727697 32 494 10.0 7.0 8.5 3.4 539 chr3L 5727158 intron sif + chr3L 5727428 intron sif + chr3L 5727697 intron sif + chr3L_32_5725001 chr3L_5725001 RAL-819 1793 chr3L 5770756 5770756 chr3L 15253229 15253229 5 9482473 59.5 48.0 53.8 0.1 9482473 chr3L 5770756 intron scny + chr3L 10511992 intron A2bp1 + chr3L 15253229 intergenic not near genes chr3L_5_10510001 chr3L_10510001 RAL-819 1794 chr3L 5771131 5771170 chr3L 5771453 5771501 38 323 90.5 115.0 102.8 0.4 370 chr3L 5771131 intron scny + chr3L 5771316 intron scny + chr3L 5771501 intron scny + chr3L_38_5770001 chr3L_5770001 RAL-819 1795 chr3L 5910006 5910061 chr3L 5910272 5910327 pogo 41 265 14.0 16.0 15.0 2.6 321 chr3L 5910006 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910327 intron CG13288 + chr3L_41_5910001 chr3L_5910001 RAL-819 1796 chr3L 5921524 5921531 chr3L 13915287 13915289 6 7993762 27.0 45.5 36.2 0.2 7993765 chr3L 5921524 intergenic CG10483 - chr3L 9918406 intron CG34356 + chr3L 13915289 intron Rgl - chr3L_6_9915001 chr3L_9915001 RAL-819 1797 chr3L 5926295 5926349 chr3L 5926509 5926528 60 208 14.5 16.5 15.5 3.6 233 chr3L 5926295 intron Vap-33B + chr3L 5926412 intron Vap-33B + chr3L 5926528 intron Vap-33B + chr3L_60_5925001 chr3L_5925001 RAL-819 1798 chr3L 5939659 5939716 chr3L 5939780 5939822 54 118 12.0 15.5 13.8 3.6 163 chr3L 5939659 intron CG33993 - chr3L 5939740 intron CG33993 - chr3L 5939822 intron CG33993 - chr3L_54_5935001 chr3L_5935001 RAL-819 1799 chr3L 5980565 5980617 chr3L 5980677 5980729 32 110 8.0 11.5 9.8 3.0 164 chr3L 5980565 intergenic not near genes chr3L 5980647 intergenic not near genes chr3L 5980729 intergenic not near genes chr3L_32_5980001 chr3L_5980001 RAL-819 1800 chr3L 6001666 6001717 chr3L 6004383 6004442 jockey 26 2724 12.5 4.0 8.2 2.8 2776 chr3L 6001666 intron PVRAP + chr3L 6003054 intron PVRAP + chr3L 6004442 intron PVRAP + chr3L_26_6000001 chr3L_6000001 RAL-819 1801 chr3L 6040341 6040393 chr3L 6042722 6042766 Doc 38 2379 9.5 12.0 10.8 3.2 2425 chr3L 6040341 intergenic Jon65Aiv + chr3L 6041554 intergenic not near genes chr3L 6042766 intergenic not near genes chr3L_38_6040001 chr3L_6040001 RAL-819 1802 chr3L 6052135 6052144 chr3L 6052245 6052255 8 111 0.0 23.5 11.8 0.6 120 chr3L 6052135 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052195 intergenic Jon65Aii + chr3L 6052255 intergenic Jon65Aii + chr3L_8_6050001 chr3L_6050001 RAL-819 1803 chr3L 6052145 6052152 chr3L 6052232 6052263 8 106 0.0 13.5 6.8 1.0 118 chr3L 6052145 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052204 intergenic Jon65Aii + chr3L 6052263 intergenic Jon65Aii + chr3L_8_6050001 chr3L_6050001 RAL-819 1804 chr3L 6052635 6052644 chr3L 6052745 6052754 6 109 36.5 30.0 33.2 0.2 119 chr3L 6052635 exon Jon65Aii + chr3L 6052694 intron Jon65Aii + chr3L 6052754 exon Jon65Aii + chr3L_6_6050001 chr3L_6050001 RAL-819 1805 chr3L 6052645 6052667 chr3L 6052740 6052754 19 102 28.5 28.0 28.2 0.7 109 chr3L 6052645 exon Jon65Aii + chr3L 6052700 intron Jon65Aii + chr3L 6052754 exon Jon65Aii + chr3L_19_6050001 chr3L_6050001 RAL-819 1806 chr3L 6119116 6119171 chr3L 6119218 6119273 23 102 18.0 9.5 13.8 1.6 157 chr3L 6119116 exon Ets65A + chr3L 6119194 intron Ets65A + chr3L 6119273 intron Ets65A + chr3L_23_6115001 chr3L_6115001 RAL-819 1807 chr3L 6155672 6155712 chr3L 6155783 6155823 27 111 10.0 12.5 11.2 2.2 151 chr3L 6155672 intergenic CR45421 - chr3L 6155748 intergenic not near genes chr3L 6155823 intergenic not near genes chr3L_27_6155001 chr3L_6155001 RAL-819 1808 chr3L 6159918 6159975 chr3L 6160023 6160089 15 108 7.0 0.0 3.5 3.3 171 chr3L 6159918 intergenic not near genes chr3L 6160004 intergenic not near genes chr3L 6160089 intergenic not near genes chr3L_15_6160001 chr3L_6160001 RAL-819 1809 chr3L 6220890 6220946 chr3L 6230067 6230108 roo 47 9174 16.0 19.0 17.5 2.5 9218 chr3L 6220890 5` UTR pncr008:3L + chr3L 6225499 intergenic not near genes chr3L 6230108 intergenic not near genes chr3L_47_6225001 chr3L_6225001 RAL-819 1810 chr3L 6278188 6278235 chr3L 6278287 6278336 21 94 14.0 0.5 7.2 2.6 148 chr3L 6278188 intergenic not near genes chr3L 6278262 intergenic not near genes chr3L 6278336 intergenic not near genes chr3L_21_6275001 chr3L_6275001 RAL-819 1811 chr3L 6315007 6315040 chr3L 6315107 6315130 12 106 8.5 0.5 4.5 2.2 123 chr3L 6315007 intergenic not near genes chr3L 6315068 intergenic not near genes chr3L 6315130 intergenic not near genes chr3L_12_6315001 chr3L_6315001 RAL-819 1812 chr3L 6334983 6335039 chr3L 6335479 6335535 297 30 495 12.5 12.0 12.2 2.3 552 chr3L 6334983 intron CG13300 - chr3L 6335259 intron CG13300 - chr3L 6335535 intron CG13300 - chr3L_30_6335001 chr3L_6335001 RAL-819 1813 chr3L 6351017 6351030 chr3L 6351121 6351134 6 102 35.5 13.5 24.5 0.2 117 chr3L 6351017 intron CG13300 - chr3L 6351076 intron CG13300 - chr3L 6351134 intron CG13300 - chr3L_6_6350001 chr3L_6350001 RAL-819 1814 chr3L 6351031 6351044 chr3L 6351119 6351123 9 94 28.0 12.5 20.2 0.4 92 chr3L 6351031 intron CG13300 - chr3L 6351077 intron CG13300 - chr3L 6351123 intron CG13300 - chr3L_9_6350001 chr3L_6350001 RAL-819 1815 chr3L 6351045 6351070 chr3L 6351118 6351174 22 97 14.0 12.5 13.2 1.5 129 chr3L 6351045 intron CG13300 - chr3L 6351110 intron CG13300 - chr3L 6351174 5` UTR CG13300 - chr3L_22_6350001 chr3L_6350001 RAL-819 1816 chr3L 6405649 6405692 chr3L 6432122 6432146 roo 32 26486 10.5 12.0 11.2 2.6 26497 chr3L 6405649 intron CG42747 + chr3L 6418898 intron CG42747 + chr3L 6432146 intron CG42747 + chr3L_32_6415001 chr3L_6415001 RAL-819 1817 chr3L 6442157 6442208 chr3L 6442346 6442397 39 191 101.0 115.5 108.2 0.4 240 chr3L 6442157 intron CG42747 + chr3L 6442277 intron CG42747 + chr3L 6442397 intron CG42747 + chr3L_39_6440001 chr3L_6440001 RAL-819 1818 chr3L 6443140 6443152 chr3L 6443375 6443387 6 235 22.0 0.0 11.0 0.5 247 chr3L 6443140 intron CG42747 + chr3L 6443264 intron CG42747 + chr3L 6443387 intron CG42747 + chr3L_6_6440001 chr3L_6440001 RAL-819 1819 chr3L 6503381 6503436 chr3L 6503499 6503548 16 118 13.5 5.5 9.5 1.5 167 chr3L 6503381 intron sfl + chr3L 6503464 intron sfl + chr3L 6503548 intron sfl + chr3L_16_6500001 chr3L_6500001 RAL-819 1820 chr3L 6573636 6573648 chr3L 6573764 6573776 6 125 38.5 17.0 27.8 0.2 140 chr3L 6573636 intron,intron CG18769 +,jv - chr3L 6573706 intron,intron CG18769 +,jv - chr3L 6573776 intron,intron CG18769 +,jv - chr3L_6_6570001 chr3L_6570001 RAL-819 1821 chr3L 6573649 6573689 chr3L 6573757 6573809 42 120 9.0 13.0 11.0 3.5 160 chr3L 6573649 intron,intron CG18769 +,jv - chr3L 6573729 intron,intron CG18769 +,jv - chr3L 6573809 intron,intron CG18769 +,jv - chr3L_42_6570001 chr3L_6570001 RAL-819 1822 chr3L 6582741 6582797 chr3L 6582865 6582921 35 122 10.0 13.5 11.8 2.7 180 chr3L 6582741 intron,intron CG18769 +,jv - chr3L 6582831 intron,intron CG18769 +,jv - chr3L 6582921 intron,intron CG18769 +,jv - chr3L_35_6580001 chr3L_6580001 RAL-819 1823 chr3L 6604288 6604296 chr3L 6604382 6604398 11 101 0.0 26.5 13.2 0.8 110 chr3L 6604288 intron CG8368 + chr3L 6604343 intron CG8368 + chr3L 6604398 intron,3` UTR CG8368 +,zpg - chr3L_11_6600001 chr3L_6600001 RAL-819 1824 chr3L 6620587 6620609 chr3L 6621052 6621053 Rt1c 23 463 12.5 29.5 21.0 1.0 466 chr3L 6620587 intergenic not near genes chr3L 6620820 intergenic not near genes chr3L 6621053 intergenic not near genes chr3L_23_6620001 chr3L_6620001 RAL-819 1825 chr3L 6642862 6642874 chr3L 6642967 6642977 9 105 1.5 0.0 0.8 5.0 115 chr3L 6642862 intergenic CR45239 + chr3L 6642920 intergenic CR45239 + chr3L 6642977 intergenic CR45239 + chr3L_9_6640001 chr3L_6640001 RAL-819 1826 chr3L 6668942 6668999 chr3L 6669048 6669090 43 103 11.5 0.0 5.8 6.3 148 chr3L 6668942 intergenic not near genes chr3L 6669016 intergenic not near genes chr3L 6669090 intergenic not near genes chr3L_43_6665001 chr3L_6665001 RAL-819 1827 chr3L 6722075 6722104 chr3L 6722177 6722206 25 101 9.5 13.5 11.5 2.0 131 chr3L 6722075 intergenic not near genes chr3L 6722140 intergenic not near genes chr3L 6722206 intergenic not near genes chr3L_25_6720001 chr3L_6720001 RAL-819 1828 chr3L 6781098 6781153 chr3L 6783136 6783188 Doc 22 2037 6.5 0.0 3.2 5.2 2090 chr3L 6781098 intergenic not near genes chr3L 6782143 intergenic not near genes chr3L 6783188 intergenic not near genes chr3L_22_6780001 chr3L_6780001 RAL-819 1829 chr3L 6807519 6807540 chr3L 6807734 6807755 17 214 21.5 12.5 17.0 0.9 236 chr3L 6807519 intergenic not near genes chr3L 6807637 intergenic not near genes chr3L 6807755 intergenic not near genes chr3L_17_6805001 chr3L_6805001 RAL-819 1830 chr3L 6808877 6808878 chr3L 6809367 6809368 4 490 35.0 19.0 27.0 0.1 491 chr3L 6808877 intergenic not near genes chr3L 6809122 intergenic not near genes chr3L 6809368 intergenic not near genes chr3L_4_6805001 chr3L_6805001 RAL-819 1831 chr3L 6808881 6808897 chr3L 6809365 6809387 17 490 25.0 17.5 21.2 0.8 506 chr3L 6808881 intergenic not near genes chr3L 6809134 intergenic not near genes chr3L 6809387 intergenic not near genes chr3L_17_6805001 chr3L_6805001 RAL-819 1832 chr3L 6808899 6808923 chr3L 6809362 6809408 23 484 11.5 16.5 14.0 1.5 509 chr3L 6808899 intergenic not near genes chr3L 6809154 intergenic not near genes chr3L 6809408 intergenic not near genes chr3L_23_6805001 chr3L_6805001 RAL-819 1833 chr3L 6835906 6835924 chr3L 6836008 6836027 12 103 13.0 13.5 13.2 0.8 121 chr3L 6835906 intergenic not near genes chr3L 6835966 intergenic not near genes chr3L 6836027 intergenic not near genes chr3L_12_6835001 chr3L_6835001 RAL-819 1834 chr3L 6844343 6844389 chr3L 6844514 6844560 28 171 9.0 13.5 11.2 2.3 217 chr3L 6844343 intergenic not near genes chr3L 6844452 intergenic not near genes chr3L 6844560 intergenic not near genes chr3L_28_6840001 chr3L_6840001 RAL-819 1835 chr3L 6855909 6855919 chr3L 6860718 6860728 Doc 6 4809 17.0 12.5 14.8 0.4 4819 chr3L 6855909 intergenic not near genes chr3L 6858318 intergenic not near genes chr3L 6860728 intergenic not near genes chr3L_6_6855001 chr3L_6855001 RAL-819 1836 chr3L 6855921 6855953 chr3L 6860717 6860762 Doc 22 4806 11.5 12.5 12.0 1.7 4841 chr3L 6855921 intergenic not near genes chr3L 6858342 intergenic not near genes chr3L 6860762 intergenic not near genes chr3L_22_6855001 chr3L_6855001 RAL-819 1837 chr3L 6865436 6865443 chr3L 6865542 6865543 5 104 8.0 0.0 4.0 1.0 107 chr3L 6865436 intergenic CR45115 - chr3L 6865490 3` UTR CR45115 - chr3L 6865543 3` UTR CR45115 - chr3L_5_6865001 chr3L_6865001 RAL-819 1838 chr3L 6868693 6868741 chr3L 6868796 6868842 23 102 0.0 11.5 5.8 3.4 149 chr3L 6868693 intergenic not near genes chr3L 6868768 intergenic not near genes chr3L 6868842 intergenic not near genes chr3L_23_6865001 chr3L_6865001 RAL-819 1839 chr3L 6887498 6887503 chr3L 6895015 6895020 roo 5 7517 37.0 14.0 25.5 0.2 7522 chr3L 6887498 intergenic not near genes chr3L 6891259 intergenic not near genes chr3L 6895020 intergenic not near genes chr3L_5_6890001 chr3L_6890001 RAL-819 1840 chr3L 6887506 6887550 chr3L 6895013 6895024 roo 36 7512 13.5 12.0 12.8 2.6 7518 chr3L 6887506 intergenic not near genes chr3L 6891265 intergenic not near genes chr3L 6895024 intergenic not near genes chr3L_36_6890001 chr3L_6890001 RAL-819 1841 chr3L 6898666 6898714 chr3L 6898829 6898877 18 163 9.0 10.5 9.8 1.7 211 chr3L 6898666 intergenic not near genes chr3L 6898772 intergenic not near genes chr3L 6898877 intergenic not near genes chr3L_18_6895001 chr3L_6895001 RAL-819 1842 chr3L 6907988 6908046 chr3L 6908098 6908149 32 105 14.0 0.0 7.0 4.0 161 chr3L 6907988 intergenic not near genes chr3L 6908068 intergenic not near genes chr3L 6908149 intergenic not near genes chr3L_32_6905001 chr3L_6905001 RAL-819 1843 chr3L 6930306 6930309 chr3L 6930408 6930411 5 101 27.5 0.0 13.8 0.3 105 chr3L 6930306 intergenic not near genes chr3L 6930358 intergenic not near genes chr3L 6930411 intergenic not near genes chr3L_5_6930001 chr3L_6930001 RAL-819 1844 chr3L 6934348 6934352 chr3L 6934484 6934488 4 136 11.0 3.5 7.2 0.5 140 chr3L 6934348 exon CG14820 + chr3L 6934418 intron CG14820 + chr3L 6934488 exon CG14820 + chr3L_4_6930001 chr3L_6930001 RAL-819 1845 chr3L 6942039 6942078 chr3L 6942163 6942202 29 123 17.5 22.0 19.8 1.4 163 chr3L 6942039 intergenic not near genes chr3L 6942120 intergenic not near genes chr3L 6942202 intergenic not near genes chr3L_29_6940001 chr3L_6940001 RAL-819 1846 chr3L 6963544 6963583 chr3L 6963654 6963693 36 108 14.5 18.5 16.5 2.1 149 chr3L 6963544 intron sgl - chr3L 6963618 intron sgl - chr3L 6963693 intron sgl - chr3L_36_6960001 chr3L_6960001 RAL-819 1847 chr3L 6963584 6963597 chr3L 6963649 6963706 10 101 8.5 13.5 11.0 0.8 122 chr3L 6963584 intron sgl - chr3L 6963645 intron sgl - chr3L 6963706 intron sgl - chr3L_10_6960001 chr3L_6960001 RAL-819 1848 chr3L 6974484 6974518 chr3L 6974608 6974643 18 122 11.0 23.0 17.0 1.0 159 chr3L 6974484 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974643 intron Galphai - chr3L_18_6970001 chr3L_6970001 RAL-819 1849 chr3L 6981921 6981936 chr3L 6982100 6982115 13 179 0.0 12.5 6.2 1.8 194 chr3L 6981921 intergenic not near genes chr3L 6982018 intergenic not near genes chr3L 6982115 intergenic not near genes chr3L_13_6980001 chr3L_6980001 RAL-819 1850 chr3L 6994887 6994902 chr3L 6995522 6995537 BS 11 635 0.5 7.5 4.0 2.2 650 chr3L 6994887 intergenic bin + chr3L 6995212 intergenic not near genes chr3L 6995537 intergenic not near genes chr3L_11_6995001 chr3L_6995001 RAL-819 1851 chr3L 7001964 7001975 chr3L 7002109 7002120 13 145 15.5 10.5 13.0 0.9 156 chr3L 7001964 intron Mp + chr3L 7002042 intron Mp + chr3L 7002120 intron Mp + chr3L_13_7000001 chr3L_7000001 RAL-819 1852 chr3L 7041898 7041925 chr3L 7042000 7042027 19 101 10.5 8.5 9.5 1.8 129 chr3L 7041898 intron Mp + chr3L 7041962 intron Mp + chr3L 7042027 intron Mp + chr3L_19_7040001 chr3L_7040001 RAL-819 1853 chr3L 7057713 7057754 chr3L 7058542 7058583 35 828 16.5 5.5 11.0 2.9 870 chr3L 7057713 intergenic not near genes chr3L 7058148 intergenic not near genes chr3L 7058583 intergenic CG8641 - chr3L_35_7055001 chr3L_7055001 RAL-819 1854 chr3L 7057822 7057825 chr3L 7058767 7058769 4 936 33.5 12.5 23.0 0.2 947 chr3L 7057822 intergenic not near genes chr3L 7058296 intergenic not near genes chr3L 7058769 intergenic CG8641 - chr3L_4_7055001 chr3L_7055001 RAL-819 1855 chr3L 7086817 7086854 chr3L 7086921 7086958 7 101 10.5 0.0 5.2 1.1 141 chr3L 7086817 intergenic Cpr65Ea - chr3L 7086888 intergenic Cpr65Ea - chr3L 7086958 intergenic Cpr65Ea - chr3L_7_7085001 chr3L_7085001 RAL-819 1856 chr3L 7089999 7090055 chr3L 7090105 7090145 40 103 13.5 15.5 14.5 2.6 146 chr3L 7089999 intergenic not near genes chr3L 7090072 intergenic not near genes chr3L 7090145 intergenic not near genes chr3L_40_7090001 chr3L_7090001 RAL-819 1857 chr3L 7100414 7100441 chr3L 7100521 7100542 28 108 13.0 9.5 11.2 2.3 128 chr3L 7100414 intron form3 + chr3L 7100478 intron form3 + chr3L 7100542 intron form3 + chr3L_28_7100001 chr3L_7100001 RAL-819 1858 chr3L 7100442 7100466 chr3L 7100519 7100533 22 103 6.5 9.5 8.0 2.4 91 chr3L 7100442 intron form3 + chr3L 7100488 intron form3 + chr3L 7100533 intron form3 + chr3L_22_7100001 chr3L_7100001 RAL-819 1859 chr3L 7112560 7112610 chr3L 7112672 7112722 46 111 15.5 16.0 15.8 2.7 162 chr3L 7112560 intron form3 + chr3L 7112641 intron form3 + chr3L 7112722 intron form3 + chr3L_46_7110001 chr3L_7110001 RAL-819 1860 chr3L 7150866 7150868 chr3L 7150967 7150969 4 101 22.0 10.0 16.0 0.2 103 chr3L 7150866 intron corn - chr3L 7150918 intron corn - chr3L 7150969 intron corn - chr3L_4_7150001 chr3L_7150001 RAL-819 1861 chr3L 7150869 7150902 chr3L 7150951 7151003 22 98 5.5 6.0 5.8 3.2 134 chr3L 7150869 intron corn - chr3L 7150936 intron corn - chr3L 7151003 intron corn - chr3L_22_7150001 chr3L_7150001 RAL-819 1862 chr3L 7187389 7187420 chr3L 7187483 7187515 18 104 0.0 0.0 0.0 18.0 126 chr3L 7187389 intron Dscam2 - chr3L 7187452 intron Dscam2 - chr3L 7187515 intron Dscam2 - chr3L_18_7185001 chr3L_7185001 RAL-819 1863 chr3L 7227347 7227401 chr3L 7227508 7227562 47 160 6.0 11.5 8.8 4.8 215 chr3L 7227347 intergenic not near genes chr3L 7227454 intergenic not near genes chr3L 7227562 intergenic not near genes chr3L_47_7225001 chr3L_7225001 RAL-819 1864 chr3L 7258916 7258933 chr3L 7259081 7259098 16 164 8.5 20.0 14.2 1.1 182 chr3L 7258916 intron CG14830 - chr3L 7259007 intron CG14830 - chr3L 7259098 intron CG14830 - chr3L_16_7255001 chr3L_7255001 RAL-819 1865 chr3L 7285299 7285354 chr3L 7285436 7285480 39 134 6.0 11.5 8.8 4.0 181 chr3L 7285299 intron unc-13-4A - chr3L 7285390 intron unc-13-4A - chr3L 7285480 intron unc-13-4A - chr3L_39_7285001 chr3L_7285001 RAL-819 1866 chr3L 7299451 7299503 chr3L 7299603 7299635 52 148 13.0 10.5 11.8 4.1 184 chr3L 7299451 intron unc-13-4A - chr3L 7299543 intron unc-13-4A - chr3L 7299635 intron unc-13-4A - chr3L_52_7295001 chr3L_7295001 RAL-819 1867 chr3L 7358269 7358325 chr3L 7359578 7359619 46 1305 59.5 71.5 65.5 0.7 1350 chr3L 7358269 exon pst - chr3L 7358944 exon pst - chr3L 7359619 intron pst - chr3L_46_7355001 chr3L_7355001 RAL-819 1868 chr3L 7357182 7357192 chr3L 7360277 7360287 8 3096 79.5 67.5 73.5 0.1 3105 chr3L 7357182 intergenic pst -,CTCF - chr3L 7358734 exon pst - chr3L 7360287 intergenic pst -,Sec63 + chr3L_8_7355001 chr3L_7355001 RAL-819 1869 chr3L 7357181 7357194 chr3L 7360288 7360297 6 3098 80.5 56.5 68.5 0.1 3116 chr3L 7357181 intergenic pst -,CTCF - chr3L 7358739 exon pst - chr3L 7360297 intergenic pst -,Sec63 + chr3L_6_7355001 chr3L_7355001 RAL-819 1870 chr3L 7377292 7377321 chr3L 7380422 7380451 297 28 3129 18.0 17.0 17.5 1.5 3159 chr3L 7377292 intron SMSr - chr3L 7378872 intron SMSr - chr3L 7380451 intron SMSr - chr3L_28_7375001 chr3L_7375001 RAL-819 1871 chr3L 7377323 7377344 chr3L 7380419 7380474 297 19 3125 10.5 16.0 13.2 1.3 3151 chr3L 7377323 intron SMSr - chr3L 7378898 intron SMSr - chr3L 7380474 intron SMSr - chr3L_19_7375001 chr3L_7375001 RAL-819 1872 chr3L 7443994 7444044 chr3L 7444117 7444133 30 120 12.0 0.5 6.2 4.2 139 chr3L 7443994 intron CG42458 + chr3L 7444064 intron CG42458 + chr3L 7444133 intron CG42458 + chr3L_30_7440001 chr3L_7440001 RAL-819 1873 chr3L 7449425 7449427 chr3L 7449529 7449532 4 105 0.5 23.0 11.8 0.3 107 chr3L 7449425 intron CG42458 + chr3L 7449478 intron CG42458 + chr3L 7449532 intron CG42458 + chr3L_4_7445001 chr3L_7445001 RAL-819 1874 chr3L 7449428 7449430 chr3L 7449527 7449529 4 100 0.5 22.5 11.5 0.3 101 chr3L 7449428 intron CG42458 + chr3L 7449478 intron CG42458 + chr3L 7449529 intron CG42458 + chr3L_4_7445001 chr3L_7445001 RAL-819 1875 chr3L 7449433 7449455 chr3L 7449522 7449560 25 102 2.0 19.0 10.5 2.2 127 chr3L 7449433 intron CG42458 + chr3L 7449496 intron CG42458 + chr3L 7449560 intron CG42458 + chr3L_25_7445001 chr3L_7445001 RAL-819 1876 chr3L 7498741 7498746 chr3L 7503543 7503548 F-element 6 4802 29.5 17.0 23.2 0.2 4807 chr3L 7498741 5` UTR CG8539 - chr3L 7501144 intergenic not near genes chr3L 7503548 intergenic not near genes chr3L_6_7500001 chr3L_7500001 RAL-819 1877 chr3L 7498747 7498785 chr3L 7503540 7503587 F-element 30 4800 16.0 16.0 16.0 1.8 4840 chr3L 7498747 5` UTR CG8539 - chr3L 7501167 intergenic not near genes chr3L 7503587 intergenic not near genes chr3L_30_7500001 chr3L_7500001 RAL-819 1878 chr3L 7576188 7576245 chr3L 7576301 7576337 48 110 11.0 7.5 9.2 4.7 149 chr3L 7576188 intergenic not near genes chr3L 7576262 intergenic not near genes chr3L 7576337 intergenic not near genes chr3L_48_7575001 chr3L_7575001 RAL-819 1879 chr3L 7581598 7581647 chr3L 7581707 7581756 47 105 16.5 15.0 15.8 2.8 158 chr3L 7581598 intergenic not near genes chr3L 7581677 intergenic not near genes chr3L 7581756 intergenic not near genes chr3L_47_7580001 chr3L_7580001 RAL-819 1880 chr3L 7591123 7591179 chr3L 7591236 7591292 47 106 10.0 11.5 10.8 4.0 169 chr3L 7591123 intergenic CG7716 - chr3L 7591208 intergenic CG7716 - chr3L 7591292 intergenic CG7716 - chr3L_47_7590001 chr3L_7590001 RAL-819 1881 chr3L 7711808 7711814 chr3L 7711909 7711915 5 101 23.0 14.5 18.8 0.3 107 chr3L 7711808 intron,intron CG32373 +,Ank2 - chr3L 7711862 intron,intron CG32373 +,Ank2 - chr3L 7711915 intron,intron CG32373 +,Ank2 - chr3L_5_7710001 chr3L_7710001 RAL-819 1882 chr3L 7711821 7711828 chr3L 7711904 7711928 11 97 17.5 11.5 14.5 0.7 107 chr3L 7711821 intron,intron CG32373 +,Ank2 - chr3L 7711874 intron,intron CG32373 +,Ank2 - chr3L 7711928 intron,intron CG32373 +,Ank2 - chr3L_11_7710001 chr3L_7710001 RAL-819 1883 chr3L 7711830 7711855 chr3L 7711903 7711936 22 93 7.5 11.0 9.2 2.2 106 chr3L 7711830 intron,intron CG32373 +,Ank2 - chr3L 7711883 intron,intron CG32373 +,Ank2 - chr3L 7711936 intron,intron CG32373 +,Ank2 - chr3L_22_7710001 chr3L_7710001 RAL-819 1884 chr3L 7715008 7715060 chr3L 7715110 7715162 18 99 13.5 8.5 11.0 1.5 154 chr3L 7715008 intron,intron CG32373 +,Ank2 - chr3L 7715085 intron,intron CG32373 +,Ank2 - chr3L 7715162 intron,intron CG32373 +,Ank2 - chr3L_18_7715001 chr3L_7715001 RAL-819 1885 chr3L 7761400 7761417 chr3L 7761501 7761518 15 100 28.0 12.0 20.0 0.7 118 chr3L 7761400 intron Hn + chr3L 7761459 intron Hn + chr3L 7761518 intron Hn + chr3L_15_7760001 chr3L_7760001 RAL-819 1886 chr3L 7793692 7793742 chr3L 7800768 7800819 297 35 7076 11.5 12.5 12.0 2.7 7127 chr3L 7793692 intron CG32369 - chr3L 7797256 intron CG32369 - chr3L 7800819 intron CG32369 - chr3L_35_7795001 chr3L_7795001 RAL-819 1887 chr3L 7842682 7842735 chr3L 7842858 7842881 18 176 5.5 0.0 2.8 4.7 199 chr3L 7842682 intron Pdp1 - chr3L 7842782 intron Pdp1 - chr3L 7842881 intron Pdp1 - chr3L_18_7840001 chr3L_7840001 RAL-819 1888 chr3L 7886490 7886506 chr3L 7889033 7889049 Stalker4 13 2542 32.0 9.5 20.8 0.6 2559 chr3L 7886490 intron CG32365 + chr3L 7887770 intron CG32365 + chr3L 7889049 intron CG32365 + chr3L_13_7885001 chr3L_7885001 RAL-819 1889 chr3L 7886508 7886547 chr3L 7889030 7889090 Stalker4 43 2538 11.5 9.5 10.5 3.7 2582 chr3L 7886508 intron CG32365 + chr3L 7887799 intron CG32365 + chr3L 7889090 intron CG32365 + chr3L_43_7885001 chr3L_7885001 RAL-819 1890 chr3L 7903048 7903087 chr3L 7903155 7903164 38 106 0.5 17.5 9.0 3.8 116 chr3L 7903048 intron pbl - chr3L 7903106 intron pbl - chr3L 7903164 intron pbl - chr3L_38_7900001 chr3L_7900001 RAL-819 1891 chr3L 7916807 7916860 chr3L 7926003 7926056 roo 23 9195 6.5 8.0 7.2 2.8 9249 chr3L 7916807 3` UTR syd - chr3L 7921432 intron syd - chr3L 7926056 3` UTR syd - chr3L_23_7920001 chr3L_7920001 RAL-819 1892 chr3L 7985344 7985369 chr3L 7987697 7987722 NOF 20 2352 23.5 18.0 20.8 0.9 2378 chr3L 7985344 intron nmo + chr3L 7986533 intron nmo + chr3L 7987722 intron nmo + chr3L_20_7985001 chr3L_7985001 RAL-819 1893 chr3L 7985373 7985391 chr3L 7987691 7987744 NOF 13 2350 14.5 14.0 14.2 0.9 2371 chr3L 7985373 intron nmo + chr3L 7986558 intron nmo + chr3L 7987744 intron nmo + chr3L_13_7985001 chr3L_7985001 RAL-819 1894 chr3L 7990850 7990879 chr3L 7990953 7990983 15 111 0.0 2.5 1.2 6.8 133 chr3L 7990850 intron nmo + chr3L 7990916 intron nmo + chr3L 7990983 intron nmo + chr3L_15_7990001 chr3L_7990001 RAL-819 1895 chr3L 8019684 8019730 chr3L 8024120 8024161 NOF 15 4430 8.0 9.0 8.5 1.6 4477 chr3L 8019684 intron nmo + chr3L 8021922 intron nmo + chr3L 8024161 intron nmo + chr3L_15_8020001 chr3L_8020001 RAL-819 1896 chr3L 8019731 8019733 chr3L 8024119 8024171 NOF 5 4423 7.5 9.0 8.2 0.5 4440 chr3L 8019731 intron nmo + chr3L 8021951 intron nmo + chr3L 8024171 intron nmo + chr3L_5_8020001 chr3L_8020001 RAL-819 1897 chr3L 8028261 8028316 chr3L 8028375 8028445 29 117 14.5 0.0 7.2 3.5 184 chr3L 8028261 intron nmo + chr3L 8028353 intron nmo + chr3L 8028445 intron nmo + chr3L_29_8025001 chr3L_8025001 RAL-819 1898 chr3L 8062824 8062848 chr3L 8062926 8062950 5 100 16.0 16.0 16.0 0.3 126 chr3L 8062824 intergenic not near genes chr3L 8062887 intergenic not near genes chr3L 8062950 intergenic not near genes chr3L_5_8060001 chr3L_8060001 RAL-819 1899 chr3L 8149740 8149793 chr3L 8149870 8149923 30 130 9.5 9.0 9.2 2.9 183 chr3L 8149740 intron CG13676 - chr3L 8149832 intron CG13676 - chr3L 8149923 intron CG13676 - chr3L_30_8145001 chr3L_8145001 RAL-819 1900 chr3L 8226692 8226738 chr3L 8226816 8226826 17 122 8.5 0.0 4.2 3.3 134 chr3L 8226692 intergenic not near genes chr3L 8226759 intergenic not near genes chr3L 8226826 intergenic not near genes chr3L_17_8225001 chr3L_8225001 RAL-819 1901 chr3L 8233566 8233593 chr3L 8238853 8238855 Rt1a 18 5283 10.5 32.5 21.5 0.8 5289 chr3L 8233566 intron CG7213 - chr3L 8236210 intron CG7213 - chr3L 8238855 intron,intron CG7213 -,Dscam4 + chr3L_18_8235001 chr3L_8235001 RAL-819 1902 chr3L 8274814 8274836 chr3L 8274953 8274954 10 137 13.0 0.0 6.5 1.3 140 chr3L 8274814 intron Dscam4 + chr3L 8274884 intron Dscam4 + chr3L 8274954 intron Dscam4 + chr3L_10_8270001 chr3L_8270001 RAL-819 1903 chr3L 8314756 8314767 chr3L 8314873 8314884 8 117 0.0 30.0 15.0 0.5 128 chr3L 8314756 intron CG7185 - chr3L 8314820 intron CG7185 - chr3L 8314884 intron CG7185 - chr3L_8_8310001 chr3L_8310001 RAL-819 1904 chr3L 8364497 8364534 chr3L 8364613 8364650 22 115 17.5 7.5 12.5 1.6 153 chr3L 8364497 intergenic not near genes chr3L 8364574 intergenic not near genes chr3L 8364650 intergenic not near genes chr3L_22_8360001 chr3L_8360001 RAL-819 1905 chr3L 8376622 8376678 chr3L 8376867 8376923 47 241 10.5 19.0 14.8 3.0 301 chr3L 8376622 intron ImpE1 + chr3L 8376772 intron ImpE1 + chr3L 8376923 intron ImpE1 + chr3L_47_8375001 chr3L_8375001 RAL-819 1906 chr3L 8383959 8384011 chr3L 8384061 8384066 24 85 13.0 23.5 18.2 1.2 107 chr3L 8383959 intron ImpE1 + chr3L 8384012 intron ImpE1 + chr3L 8384066 intron ImpE1 + chr3L_24_8380001 chr3L_8380001 RAL-819 1907 chr3L 8442896 8442906 chr3L 8442996 8443007 8 101 0.0 20.0 10.0 0.7 111 chr3L 8442896 intergenic CG6983 - chr3L 8442952 intergenic CG6983 - chr3L 8443007 intergenic CG6983 - chr3L_8_8440001 chr3L_8440001 RAL-819 1908 chr3L 8443547 8443583 chr3L 8443648 8443690 7 106 7.0 10.5 8.8 0.7 143 chr3L 8443547 3` UTR CG6983 - chr3L 8443618 3` UTR CG6983 - chr3L 8443690 3` UTR CG6983 - chr3L_7_8440001 chr3L_8440001 RAL-819 1909 chr3L 8481755 8481805 chr3L 8490930 8490974 roo 40 9173 16.0 10.5 13.2 2.8 9219 chr3L 8481755 intron CG43163 - chr3L 8486364 intron CG43163 - chr3L 8490974 intron CG43163 - chr3L_40_8485001 chr3L_8485001 RAL-819 1910 chr3L 8498273 8498325 chr3L 8505765 8505817 blood 35 7491 16.0 11.0 13.5 2.4 7544 chr3L 8498273 intron CG43163 - chr3L 8502045 intron CG43163 - chr3L 8505817 intron CG43163 - chr3L_35_8500001 chr3L_8500001 RAL-819 1911 chr3L 8576953 8577001 chr3L 8577059 8577085 46 105 10.5 13.5 12.0 3.5 132 chr3L 8576953 5` UTR CG43078 + chr3L 8577019 5` UTR CG43078 + chr3L 8577085 5` UTR CG43078 + chr3L_46_8575001 chr3L_8575001 RAL-819 1912 chr3L 8627136 8627144 chr3L 8627253 8627261 4 117 0.0 0.0 0.0 4.0 125 chr3L 8627136 intron Zasp66 + chr3L 8627198 intron Zasp66 + chr3L 8627261 intron Zasp66 + chr3L_4_8625001 chr3L_8625001 RAL-819 1913 chr3L 8643548 8643605 chr3L 8643649 8643706 50 100 12.0 13.0 12.5 3.7 158 chr3L 8643548 3` UTR Cpr66D + chr3L 8643627 intergenic Cpr66D + chr3L 8643706 intergenic Cpr66D + chr3L_50_8640001 chr3L_8640001 RAL-819 1914 chr3L 8697265 8697289 chr3L 8697370 8697394 17 105 9.5 6.0 7.8 1.9 129 chr3L 8697265 intergenic not near genes chr3L 8697330 intergenic not near genes chr3L 8697394 intergenic not near genes chr3L_17_8695001 chr3L_8695001 RAL-819 1915 chr3L 8791252 8791272 chr3L 8796697 8796706 I-element 16 5442 30.5 0.0 15.2 1.0 5454 chr3L 8791252 exon Fhos + chr3L 8793979 intron Fhos + chr3L 8796706 intron Fhos + chr3L_16_8790001 chr3L_8790001 RAL-819 1916 chr3L 8791283 8791309 chr3L 8796691 8796753 I-element 15 5440 13.0 0.0 6.5 2.0 5470 chr3L 8791283 exon Fhos + chr3L 8794018 intron Fhos + chr3L 8796753 intron Fhos + chr3L_15_8790001 chr3L_8790001 RAL-819 1917 chr3L 8916541 8916567 chr3L 8916651 8916677 26 109 0.0 12.5 6.2 3.6 136 chr3L 8916541 intron Tsp66E + chr3L 8916609 intron Tsp66E + chr3L 8916677 intron Tsp66E + chr3L_26_8915001 chr3L_8915001 RAL-819 1918 chr3L 8950526 8950540 chr3L 8950645 8950659 15 119 33.5 17.5 25.5 0.6 133 chr3L 8950526 intron,intron CG43783 -,orb2 - chr3L 8950592 intron,intron CG43783 -,orb2 - chr3L 8950659 intron,intron CG43783 -,orb2 - chr3L_15_8950001 chr3L_8950001 RAL-819 1919 chr3L 8950544 8950551 chr3L 8950642 8950670 9 117 28.0 15.0 21.5 0.4 126 chr3L 8950544 intron,intron CG43783 -,orb2 - chr3L 8950607 intron,intron CG43783 -,orb2 - chr3L 8950670 intron,intron CG43783 -,orb2 - chr3L_9_8950001 chr3L_8950001 RAL-819 1920 chr3L 8950552 8950582 chr3L 8950641 8950700 14 114 14.0 15.0 14.5 0.9 148 chr3L 8950552 intron,intron CG43783 -,orb2 - chr3L 8950626 intron,intron CG43783 -,orb2 - chr3L 8950700 intron,intron CG43783 -,orb2 - chr3L_14_8950001 chr3L_8950001 RAL-819 1921 chr3L 8959372 8959388 chr3L 8959558 8959574 14 186 16.0 1.5 8.8 1.4 202 chr3L 8959372 intron CG13313 + chr3L 8959473 intron CG13313 + chr3L 8959574 intron CG13313 + chr3L_14_8955001 chr3L_8955001 RAL-819 1922 chr3L 9011103 9011156 chr3L 9011215 9011268 28 112 7.5 6.0 6.8 3.6 165 chr3L 9011103 intergenic not near genes chr3L 9011186 intergenic not near genes chr3L 9011268 intergenic not near genes chr3L_28_9010001 chr3L_9010001 RAL-819 1923 chr3L 9022733 9022759 chr3L 9022834 9022860 16 101 19.0 12.5 15.8 1.0 127 chr3L 9022733 intergenic not near genes chr3L 9022796 intergenic not near genes chr3L 9022860 intergenic not near genes chr3L_16_9020001 chr3L_9020001 RAL-819 1924 chr3L 9022765 9022788 chr3L 9022851 9022889 17 100 9.5 18.5 14.0 1.1 124 chr3L 9022765 intergenic not near genes chr3L 9022827 intergenic not near genes chr3L 9022889 intergenic not near genes chr3L_17_9020001 chr3L_9020001 RAL-819 1925 chr3L 9036266 9036285 chr3L 9036377 9036396 17 110 30.5 27.5 29.0 0.6 130 chr3L 9036266 intergenic not near genes chr3L 9036331 intergenic not near genes chr3L 9036396 intergenic not near genes chr3L_17_9035001 chr3L_9035001 RAL-819 1926 chr3L 9076900 9076958 chr3L 9084485 9084533 412 43 7583 12.5 16.0 14.2 2.8 7633 chr3L 9076900 exon Tequila + chr3L 9080716 intron Tequila + chr3L 9084533 exon Tequila + chr3L_43_9080001 chr3L_9080001 RAL-819 1927 chr3L 9118333 9118346 chr3L 9118432 9118452 6 101 41.0 15.0 28.0 0.2 119 chr3L 9118333 intron bol - chr3L 9118392 intron bol - chr3L 9118452 intron bol - chr3L_6_9115001 chr3L_9115001 RAL-819 1928 chr3L 9129410 9129467 chr3L 9129548 9129603 52 136 16.0 14.5 15.2 3.2 193 chr3L 9129410 intron bol - chr3L 9129506 intron bol - chr3L 9129603 intron bol - chr3L_52_9125001 chr3L_9125001 RAL-819 1929 chr3L 9130531 9130582 chr3L 9134317 9134368 412 38 3782 18.0 11.5 14.8 2.4 3837 chr3L 9130531 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134368 intergenic Dhpr + chr3L_38_9130001 chr3L_9130001 RAL-819 1930 chr3L 9143322 9143374 chr3L 9143429 9143456 9 102 2.5 7.5 5.0 1.5 134 chr3L 9143322 exon nwk + chr3L 9143389 intron nwk + chr3L 9143456 intron nwk + chr3L_9_9140001 chr3L_9140001 RAL-819 1931 chr3L 9164673 9164713 chr3L 9166164 9166174 hobo 20 1490 20.0 0.5 10.2 1.8 1501 chr3L 9164673 intron Rdl - chr3L 9165424 intron Rdl - chr3L 9166174 intron Rdl - chr3L_20_9165001 chr3L_9165001 RAL-819 1932 chr3L 9219221 9219272 chr3L 9219918 9219964 jockey 54 693 17.0 19.0 18.0 2.8 743 chr3L 9219221 intergenic not near genes chr3L 9219592 intergenic not near genes chr3L 9219964 intergenic not near genes chr3L_54_9215001 chr3L_9215001 RAL-819 1933 chr3L 9237527 9237530 chr3L 9237633 9237636 4 106 12.5 8.5 10.5 0.3 109 chr3L 9237527 intergenic not near genes chr3L 9237582 intergenic not near genes chr3L 9237636 intergenic not near genes chr3L_4_9235001 chr3L_9235001 RAL-819 1934 chr3L 9270594 9270620 chr3L 9278374 9278400 roo 17 7779 29.5 15.0 22.2 0.7 7806 chr3L 9270594 intron GluRIB + chr3L 9274497 intron GluRIB + chr3L 9278400 exon GluRIB + chr3L_17_9270001 chr3L_9270001 RAL-819 1935 chr3L 9270621 9270647 chr3L 9278370 9278401 roo 25 7770 16.0 13.0 14.5 1.6 7780 chr3L 9270621 intron GluRIB + chr3L 9274511 intron GluRIB + chr3L 9278401 exon GluRIB + chr3L_25_9270001 chr3L_9270001 RAL-819 1936 chr3L 9307795 9307796 chr3L 22908066 22908066 8 13600270 49.0 61.0 55.0 0.1 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_8_16105001 chr3L_16105001 RAL-819 1937 chr3L 9313026 9313027 chr3L 11777678 11777678 9 2464652 38.0 42.0 40.0 0.2 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_9_10545001 chr3L_10545001 RAL-819 1938 chr3L 9344197 9344225 chr3L 9344289 9344328 23 101 0.0 22.0 11.0 1.9 131 chr3L 9344197 intron PGRP-LC + chr3L 9344262 intron PGRP-LC + chr3L 9344328 intron PGRP-LC + chr3L_23_9340001 chr3L_9340001 RAL-819 1939 chr3L 9347367 9347416 chr3L 9347469 9347518 31 102 8.5 11.5 10.0 2.8 151 chr3L 9347367 intron PGRP-LC + chr3L 9347442 intron PGRP-LC + chr3L 9347518 intron PGRP-LC + chr3L_31_9345001 chr3L_9345001 RAL-819 1940 chr3L 9348442 9348487 chr3L 9348969 9349008 28 524 10.0 1.0 5.5 4.3 566 chr3L 9348442 intergenic PGRP-LC + chr3L 9348725 intergenic PGRP-LC + chr3L 9349008 intergenic not near genes chr3L_28_9345001 chr3L_9345001 RAL-819 1941 chr3L 9359568 9359618 chr3L 9359683 9359734 51 114 12.5 14.0 13.2 3.6 166 chr3L 9359568 3` UTR CG32039 + chr3L 9359651 3` UTR CG32039 + chr3L 9359734 3` UTR CG32039 + chr3L_51_9355001 chr3L_9355001 RAL-819 1942 chr3L 9382819 9382825 chr3L 9382944 9382950 7 125 2.5 0.0 1.2 3.2 131 chr3L 9382819 intergenic Hsp23 + chr3L 9382884 intergenic Hsp23 + chr3L 9382950 intergenic Hsp23 + chr3L_7_9380001 chr3L_9380001 RAL-819 1943 chr3L 9392446 9392453 chr3L 9395291 9395297 Doc 5 2844 39.5 16.0 27.8 0.2 2851 chr3L 9392446 intron CG4080 - chr3L 9393872 intron CG4080 - chr3L 9395297 intron CG4080 - chr3L_5_9390001 chr3L_9390001 RAL-819 1944 chr3L 9443493 9443540 chr3L 9445299 9445356 S-element 39 1813 11.5 14.0 12.8 2.8 1863 chr3L 9443493 intron CG33926 + chr3L 9444424 intron CG33926 + chr3L 9445356 intron CG33926 + chr3L_39_9440001 chr3L_9440001 RAL-819 1945 chr3L 9498179 9498233 chr3L 9498281 9498335 24 102 9.0 9.0 9.0 2.4 156 chr3L 9498179 intron path - chr3L 9498257 intron path - chr3L 9498335 intron path - chr3L_24_9495001 chr3L_9495001 RAL-819 1946 chr3L 9501677 9501717 chr3L 9502188 9502198 roo 24 509 12.0 1.0 6.5 3.2 521 chr3L 9501677 intron path - chr3L 9501938 intron path - chr3L 9502198 intron path - chr3L_24_9500001 chr3L_9500001 RAL-819 1947 chr3L 9503446 9503462 chr3L 9503552 9503575 13 113 16.5 21.0 18.8 0.7 129 chr3L 9503446 intron path - chr3L 9503510 intron path - chr3L 9503575 intron path - chr3L_13_9500001 chr3L_9500001 RAL-819 1948 chr3L 9533726 9533763 chr3L 9541311 9541348 412 15 7582 21.0 30.5 25.8 0.6 7622 chr3L 9533726 intergenic not near genes chr3L 9537537 intergenic not near genes chr3L 9541348 intergenic not near genes chr3L_15_9535001 chr3L_9535001 RAL-819 1949 chr3L 9571878 9571901 chr3L 9572251 9572274 jockey 14 373 26.0 0.0 13.0 1.0 396 chr3L 9571878 intron CG42673 + chr3L 9572076 intron CG42673 + chr3L 9572274 intron CG42673 + chr3L_14_9570001 chr3L_9570001 RAL-819 1950 chr3L 9575886 9575913 chr3L 9580989 9581016 jockey 20 5102 26.5 14.0 20.2 0.9 5130 chr3L 9575886 intron CG42673 + chr3L 9578451 intron CG42673 + chr3L 9581016 intron CG42673 + chr3L_20_9575001 chr3L_9575001 RAL-819 1951 chr3L 9575914 9575946 chr3L 9580986 9581013 jockey 16 5092 12.0 14.0 13.0 1.1 5099 chr3L 9575914 intron CG42673 + chr3L 9578464 intron CG42673 + chr3L 9581013 intron CG42673 + chr3L_16_9575001 chr3L_9575001 RAL-819 1952 chr3L 9637827 9637885 chr3L 9637934 9637992 64 106 11.0 10.5 10.8 5.4 165 chr3L 9637827 exon fry - chr3L 9637910 intron fry - chr3L 9637992 intron fry - chr3L_64_9635001 chr3L_9635001 RAL-819 1953 chr3L 9639004 9639060 chr3L 9639114 9639170 31 105 0.5 16.5 8.5 3.3 166 chr3L 9639004 intron,3` UTR fry -,CG8329 + chr3L 9639087 intron fry - chr3L 9639170 intron fry - chr3L_31_9635001 chr3L_9635001 RAL-819 1954 chr3L 9652759 9652816 chr3L 9652996 9653053 32 236 7.0 6.5 6.8 4.1 294 chr3L 9652759 intron,intron fry -,CG33696 + chr3L 9652906 intron,intron fry -,CG33696 + chr3L 9653053 intron,intron fry -,CG33696 + chr3L_32_9650001 chr3L_9650001 RAL-819 1955 chr3L 9848000 9848018 chr3L 9848100 9848119 15 100 9.5 20.0 14.8 0.9 119 chr3L 9848000 intron RasGAP1 - chr3L 9848060 intron RasGAP1 - chr3L 9848119 intron RasGAP1 - chr3L_15_9845001 chr3L_9845001 RAL-819 1956 chr3L 9929644 9929700 chr3L 9938451 9938506 roo 22 8804 10.0 12.5 11.2 1.8 8862 chr3L 9929644 intron CG34356 + chr3L 9934075 intron CG34356 + chr3L 9938506 intron CG34356 + chr3L_22_9930001 chr3L_9930001 RAL-819 1957 chr3L 9966782 9966800 chr3L 9970266 9970324 52 3495 63.5 79.0 71.2 0.7 3542 chr3L 9966782 3` UTR,3` UTR CG34356 +,CG6685 - chr3L 9968553 5` UTR Nc + chr3L 9970324 exon Nc + chr3L_52_9965001 chr3L_9965001 RAL-819 1958 chr3L 9990491 9990528 chr3L 9990595 9990657 33 119 11.5 9.0 10.2 2.9 166 chr3L 9990491 intron dpr6 + chr3L 9990574 intron dpr6 + chr3L 9990657 intron dpr6 + chr3L_33_9990001 chr3L_9990001 RAL-819 1959 chr3L 9994077 9994103 chr3L 9994188 9994212 10 110 7.0 12.5 9.8 0.9 135 chr3L 9994077 intron dpr6 + chr3L 9994144 intron dpr6 + chr3L 9994212 intron dpr6 + chr3L_10_9990001 chr3L_9990001 RAL-819 1960 chr3L 10004064 10004111 chr3L 10004166 10004216 18 98 11.0 15.5 13.2 1.3 152 chr3L 10004064 exon dpr6 + chr3L 10004140 intron dpr6 + chr3L 10004216 intron dpr6 + chr3L_18_10000001 chr3L_10000001 RAL-819 1961 chr3L 10011573 10011581 chr3L 10011680 10011688 9 106 26.5 13.5 20.0 0.4 115 chr3L 10011573 intron dpr6 + chr3L 10011630 intron dpr6 + chr3L 10011688 intron dpr6 + chr3L_9_10010001 chr3L_10010001 RAL-819 1962 chr3L 10011582 10011623 chr3L 10011674 10011703 19 101 13.0 12.5 12.8 1.4 121 chr3L 10011582 intron dpr6 + chr3L 10011642 intron dpr6 + chr3L 10011703 intron dpr6 + chr3L_19_10010001 chr3L_10010001 RAL-819 1963 chr3L 10120255 10120274 chr3L 10120373 10120392 6 116 35.0 17.0 26.0 0.2 137 chr3L 10120255 intron dpr6 + chr3L 10120324 intron dpr6 + chr3L 10120392 intron dpr6 + chr3L_6_10120001 chr3L_10120001 RAL-819 1964 chr3L 10120279 10120313 chr3L 10120367 10120410 23 93 16.0 10.0 13.0 1.6 131 chr3L 10120279 intron dpr6 + chr3L 10120344 intron dpr6 + chr3L 10120410 intron dpr6 + chr3L_23_10120001 chr3L_10120001 RAL-819 1965 chr3L 10165638 10165647 chr3L 10165739 10165743 7 100 23.0 1.5 12.2 0.5 105 chr3L 10165638 intron dpr10 - chr3L 10165690 intron dpr10 - chr3L 10165743 intron dpr10 - chr3L_7_10165001 chr3L_10165001 RAL-819 1966 chr3L 10204052 10204075 chr3L 10204217 10204240 23 164 13.5 0.5 7.0 2.9 188 chr3L 10204052 intergenic not near genes chr3L 10204146 intergenic not near genes chr3L 10204240 intergenic not near genes chr3L_23_10200001 chr3L_10200001 RAL-819 1967 chr3L 10204076 10204093 chr3L 10204216 10204258 15 162 8.5 0.5 4.5 2.7 182 chr3L 10204076 intergenic not near genes chr3L 10204167 intergenic not near genes chr3L 10204258 intergenic not near genes chr3L_15_10200001 chr3L_10200001 RAL-819 1968 chr3L 10214787 10214830 chr3L 10214914 10214957 39 125 11.0 8.5 9.8 3.6 170 chr3L 10214787 intergenic not near genes chr3L 10214872 intergenic not near genes chr3L 10214957 intergenic not near genes chr3L_39_10210001 chr3L_10210001 RAL-819 1969 chr3L 10281692 10281749 chr3L 10281835 10281892 47 139 8.5 7.0 7.8 5.3 200 chr3L 10281692 intergenic not near genes chr3L 10281792 intergenic not near genes chr3L 10281892 intergenic not near genes chr3L_47_10280001 chr3L_10280001 RAL-819 1970 chr3L 10298651 10298652 chr3L 10298763 10298764 4 112 0.0 5.5 2.8 1.1 113 chr3L 10298651 intergenic not near genes chr3L 10298708 intergenic not near genes chr3L 10298764 intergenic not near genes chr3L_4_10295001 chr3L_10295001 RAL-819 1971 chr3L 10298653 10298702 chr3L 10298754 10298814 46 111 0.0 4.0 2.0 15.3 161 chr3L 10298653 intergenic not near genes chr3L 10298734 intergenic not near genes chr3L 10298814 intergenic not near genes chr3L_46_10295001 chr3L_10295001 RAL-819 1972 chr3L 10300027 10300049 chr3L 10300144 10300166 15 116 16.5 6.0 11.2 1.2 139 chr3L 10300027 intergenic not near genes chr3L 10300096 intergenic not near genes chr3L 10300166 intergenic not near genes chr3L_15_10300001 chr3L_10300001 RAL-819 1973 chr3L 10308727 10308776 chr3L 10308829 10308837 37 99 10.5 17.5 14.0 2.5 110 chr3L 10308727 intergenic not near genes chr3L 10308782 intergenic not near genes chr3L 10308837 intergenic not near genes chr3L_37_10305001 chr3L_10305001 RAL-819 1974 chr3L 10328090 10328126 chr3L 10328227 10328263 26 136 14.0 15.5 14.8 1.6 173 chr3L 10328090 intergenic not near genes chr3L 10328176 intergenic not near genes chr3L 10328263 intergenic not near genes chr3L_26_10325001 chr3L_10325001 RAL-819 1975 chr3L 10383191 10383247 chr3L 10383315 10383360 28 122 5.5 4.5 5.0 4.7 169 chr3L 10383191 intergenic not near genes chr3L 10383276 intergenic not near genes chr3L 10383360 intergenic not near genes chr3L_28_10380001 chr3L_10380001 RAL-819 1976 chr3L 10390224 10390268 chr3L 10390341 10390385 38 116 7.5 10.5 9.0 3.8 161 chr3L 10390224 intergenic not near genes chr3L 10390304 intergenic not near genes chr3L 10390385 intergenic not near genes chr3L_38_10390001 chr3L_10390001 RAL-819 1977 chr3L 10414928 10414933 chr3L 10417325 10417330 Doc 6 2397 16.0 15.5 15.8 0.4 2402 chr3L 10414928 intergenic CG12362 + chr3L 10416129 intergenic not near genes chr3L 10417330 intergenic not near genes chr3L_6_10415001 chr3L_10415001 RAL-819 1978 chr3L 10414934 10414975 chr3L 10417311 10417336 Doc 34 2393 11.0 10.0 10.5 3.0 2402 chr3L 10414934 intergenic CG12362 + chr3L 10416135 intergenic not near genes chr3L 10417336 intergenic not near genes chr3L_34_10415001 chr3L_10415001 RAL-819 1979 chr3L 10417548 10417604 chr3L 10417650 10417689 40 95 15.0 14.0 14.5 2.6 141 chr3L 10417548 intergenic not near genes chr3L 10417618 intergenic not near genes chr3L 10417689 intergenic not near genes chr3L_40_10415001 chr3L_10415001 RAL-819 1980 chr3L 10497946 10498002 chr3L 10498128 10498184 34 179 6.0 8.5 7.2 4.1 238 chr3L 10497946 intron A2bp1 + chr3L 10498065 intron A2bp1 + chr3L 10498184 intron A2bp1 + chr3L_34_10495001 chr3L_10495001 RAL-819 1981 chr3L 10526635 10526653 chr3L 10526720 10526758 12 98 11.0 18.0 14.5 0.8 123 chr3L 10526635 intron A2bp1 + chr3L 10526696 intron A2bp1 + chr3L 10526758 intron A2bp1 + chr3L_12_10525001 chr3L_10525001 RAL-819 1982 chr3L 10621823 10621827 chr3L 10621935 10621939 4 112 12.0 9.5 10.8 0.3 116 chr3L 10621823 intergenic not near genes chr3L 10621881 intergenic not near genes chr3L 10621939 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-819 1983 chr3L 10621829 10621879 chr3L 10621933 10621991 29 108 6.5 9.0 7.8 3.3 162 chr3L 10621829 intergenic not near genes chr3L 10621910 intergenic not near genes chr3L 10621991 intergenic not near genes chr3L_29_10620001 chr3L_10620001 RAL-819 1984 chr3L 10627419 10627444 chr3L 10627527 10627552 10 107 1.0 6.0 3.5 2.2 133 chr3L 10627419 3` UTR CG34238 + chr3L 10627486 intergenic CG34238 +,CG14151 - chr3L 10627552 intergenic CG34238 +,CG14151 - chr3L_10_10625001 chr3L_10625001 RAL-819 1985 chr3L 10702450 10702508 chr3L 10702553 10702609 10 96 12.0 13.0 12.5 0.7 159 chr3L 10702450 intergenic not near genes chr3L 10702530 intergenic not near genes chr3L 10702609 intergenic not near genes chr3L_10_10700001 chr3L_10700001 RAL-819 1986 chr3L 10707866 10707901 chr3L 10708157 10708188 26 297 15.5 11.5 13.5 1.8 322 chr3L 10707866 intergenic not near genes chr3L 10708027 intergenic not near genes chr3L 10708188 intergenic not near genes chr3L_26_10705001 chr3L_10705001 RAL-819 1987 chr3L 10707903 10707909 chr3L 10708154 10708210 10 294 12.0 11.0 11.5 0.8 307 chr3L 10707903 intergenic not near genes chr3L 10708056 intergenic not near genes chr3L 10708210 intergenic not near genes chr3L_10_10705001 chr3L_10705001 RAL-819 1988 chr3L 10714525 10714529 chr3L 10714627 10714631 4 102 9.5 0.0 4.8 0.7 106 chr3L 10714525 intergenic not near genes chr3L 10714578 intergenic not near genes chr3L 10714631 intergenic not near genes chr3L_4_10710001 chr3L_10710001 RAL-819 1989 chr3L 10721969 10722015 chr3L 10722076 10722095 16 104 16.5 0.5 8.5 1.7 126 chr3L 10721969 intergenic not near genes chr3L 10722032 intergenic not near genes chr3L 10722095 intergenic not near genes chr3L_16_10720001 chr3L_10720001 RAL-819 1990 chr3L 10762804 10762860 chr3L 10762913 10762969 24 103 11.5 8.5 10.0 2.2 165 chr3L 10762804 intergenic not near genes chr3L 10762886 intergenic not near genes chr3L 10762969 intergenic not near genes chr3L_24_10760001 chr3L_10760001 RAL-819 1991 chr3L 10770483 10770506 chr3L 10770589 10770612 11 106 8.5 4.5 6.5 1.5 129 chr3L 10770483 intergenic not near genes chr3L 10770548 intergenic not near genes chr3L 10770612 intergenic not near genes chr3L_11_10770001 chr3L_10770001 RAL-819 1992 chr3L 10820480 10820524 chr3L 10820664 10820706 16 182 3.5 0.5 2.0 5.3 226 chr3L 10820480 intergenic not near genes chr3L 10820593 intergenic not near genes chr3L 10820706 intergenic not near genes chr3L_16_10820001 chr3L_10820001 RAL-819 1993 chr3L 10947979 10948026 chr3L 10948083 10948130 28 104 13.5 12.0 12.8 2.0 151 chr3L 10947979 intergenic not near genes chr3L 10948054 intergenic not near genes chr3L 10948130 intergenic not near genes chr3L_28_10945001 chr3L_10945001 RAL-819 1994 chr3L 10951277 10951294 chr3L 10951378 10951395 4 97 0.0 16.5 8.2 0.4 118 chr3L 10951277 intergenic not near genes chr3L 10951336 intergenic not near genes chr3L 10951395 intergenic not near genes chr3L_4_10950001 chr3L_10950001 RAL-819 1995 chr3L 10956428 10956431 chr3L 10956571 10956574 5 143 18.0 13.5 15.8 0.3 146 chr3L 10956428 intergenic not near genes chr3L 10956501 intergenic not near genes chr3L 10956574 intergenic not near genes chr3L_5_10955001 chr3L_10955001 RAL-819 1996 chr3L 10956432 10956469 chr3L 10956569 10956583 30 139 6.5 12.5 9.5 2.9 151 chr3L 10956432 intergenic not near genes chr3L 10956508 intergenic not near genes chr3L 10956583 intergenic not near genes chr3L_30_10955001 chr3L_10955001 RAL-819 1997 chr3L 10958182 10958240 chr3L 10958288 10958337 24 105 9.5 0.5 5.0 4.0 155 chr3L 10958182 intergenic not near genes chr3L 10958260 intergenic not near genes chr3L 10958337 intergenic not near genes chr3L_24_10955001 chr3L_10955001 RAL-819 1998 chr3L 10968687 10968719 chr3L 10968795 10968827 5 105 12.5 0.0 6.2 0.7 140 chr3L 10968687 intergenic not near genes chr3L 10968757 intergenic not near genes chr3L 10968827 intergenic not near genes chr3L_5_10965001 chr3L_10965001 RAL-819 1999 chr3L 11087046 11087090 chr3L 11088859 11088904 S-element 19 1813 9.5 18.0 13.8 1.3 1858 chr3L 11087046 intron JIL-1 - chr3L 11087975 intron JIL-1 - chr3L 11088904 intron JIL-1 - chr3L_19_11085001 chr3L_11085001 RAL-819 2000 chr3L 11105274 11105329 chr3L 11107010 11107045 X-element 33 1734 10.0 20.0 15.0 2.1 1771 chr3L 11105274 intergenic not near genes chr3L 11106160 intergenic not near genes chr3L 11107045 exon CG32073 - chr3L_33_11105001 chr3L_11105001 RAL-819 2001 chr3L 11107624 11107678 chr3L 11107935 11107989 41 309 18.0 12.5 15.2 2.5 365 chr3L 11107624 intergenic CG32073 - chr3L 11107806 intergenic CG32073 -,CG12522 + chr3L 11107989 intergenic CG12522 +,CG32073 - chr3L_41_11105001 chr3L_11105001 RAL-819 2002 chr3L 11127186 11127195 chr3L 11127288 11127291 7 100 17.0 0.0 8.5 0.7 105 chr3L 11127186 intron CG42575 + chr3L 11127238 intron CG42575 + chr3L 11127291 intron CG42575 + chr3L_7_11125001 chr3L_11125001 RAL-819 2003 chr3L 11127196 11127218 chr3L 11127287 11127344 5 113 11.5 0.0 5.8 0.7 148 chr3L 11127196 intron CG42575 + chr3L 11127270 intron CG42575 + chr3L 11127344 intron CG42575 + chr3L_5_11125001 chr3L_11125001 RAL-819 2004 chr3L 11131784 11131807 chr3L 11132073 11132086 16 287 14.5 9.5 12.0 1.2 302 chr3L 11131784 intron CG42575 + chr3L 11131935 intron,3` UTR CG42575 +,CG32074 - chr3L 11132086 intron,exon CG42575 +,CG32074 - chr3L_16_11130001 chr3L_11130001 RAL-819 2005 chr3L 11135503 11135532 chr3L 11135758 11135787 24 255 5.5 0.5 3.0 6.0 284 chr3L 11135503 intergenic CG14143 + chr3L 11135645 intergenic CG14143 +,CG32082 + chr3L 11135787 intergenic CG32082 +,CG14143 + chr3L_24_11135001 chr3L_11135001 RAL-819 2006 chr3L 11141413 11141467 chr3L 11141519 11141587 24 118 8.5 0.0 4.2 4.6 174 chr3L 11141413 intron CG32082 + chr3L 11141500 intron CG32082 + chr3L 11141587 intron CG32082 + chr3L_24_11140001 chr3L_11140001 RAL-819 2007 chr3L 11145537 11145557 chr3L 11145637 11145672 18 112 0.0 10.0 5.0 3.0 135 chr3L 11145537 intron CG32082 + chr3L 11145604 intron CG32082 + chr3L 11145672 intron CG32082 + chr3L_18_11145001 chr3L_11145001 RAL-819 2008 chr3L 11146199 11146224 chr3L 11146337 11146362 17 138 23.0 12.5 17.8 0.9 163 chr3L 11146199 intron CG32082 + chr3L 11146280 intron CG32082 + chr3L 11146362 intron CG32082 + chr3L_17_11145001 chr3L_11145001 RAL-819 2009 chr3L 11195468 11195485 chr3L 11195763 11195782 6 296 1.5 5.5 3.5 1.3 314 chr3L 11195468 intron GlcAT-P - chr3L 11195625 intron GlcAT-P - chr3L 11195782 intron GlcAT-P - chr3L_6_11195001 chr3L_11195001 RAL-819 2010 chr3L 11217486 11217527 chr3L 11217592 11217635 25 107 14.5 10.0 12.2 1.9 149 chr3L 11217486 intron CG42671 + chr3L 11217560 intron CG42671 + chr3L 11217635 intron CG42671 + chr3L_25_11215001 chr3L_11215001 RAL-819 2011 chr3L 11264445 11264457 chr3L 11271422 11271434 17.6 10 6977 27.5 16.0 21.8 0.4 6989 chr3L 11264445 intergenic not near genes chr3L 11267940 intergenic not near genes chr3L 11271434 intergenic not near genes chr3L_10_11265001 chr3L_11265001 RAL-819 2012 chr3L 11264458 11264499 chr3L 11271419 11271442 17.6 36 6968 13.5 14.5 14.0 2.4 6984 chr3L 11264458 intergenic not near genes chr3L 11267950 intergenic not near genes chr3L 11271442 intergenic not near genes chr3L_36_11265001 chr3L_11265001 RAL-819 2013 chr3L 11290600 11290657 chr3L 11290948 11291005 33 348 9.0 15.0 12.0 2.5 405 chr3L 11290600 intron CG6175 - chr3L 11290802 intron CG6175 - chr3L 11291005 intron CG6175 - chr3L_33_11290001 chr3L_11290001 RAL-819 2014 chr3L 11303025 11303039 chr3L 11303136 11303148 9 110 15.5 0.0 7.8 1.0 123 chr3L 11303025 intergenic not near genes chr3L 11303086 intergenic not near genes chr3L 11303148 intergenic not near genes chr3L_9_11300001 chr3L_11300001 RAL-819 2015 chr3L 11304591 11304618 chr3L 11304711 11304739 21 117 18.0 3.0 10.5 1.8 148 chr3L 11304591 intergenic not near genes chr3L 11304665 intergenic not near genes chr3L 11304739 intergenic not near genes chr3L_21_11300001 chr3L_11300001 RAL-819 2016 chr3L 11304620 11304640 chr3L 11304710 11304761 18 116 7.5 3.0 5.2 2.9 141 chr3L 11304620 intergenic not near genes chr3L 11304690 intergenic not near genes chr3L 11304761 intergenic not near genes chr3L_18_11300001 chr3L_11300001 RAL-819 2017 chr3L 11329672 11329721 chr3L 11332902 11332951 jockey 34 3228 12.5 15.0 13.8 2.3 3279 chr3L 11329672 intergenic not near genes chr3L 11331312 intergenic not near genes chr3L 11332951 intergenic not near genes chr3L_34_11330001 chr3L_11330001 RAL-819 2018 chr3L 11432880 11432940 chr3L 11432984 11433044 38 103 1.0 9.5 5.2 6.1 164 chr3L 11432880 intergenic not near genes chr3L 11432962 intergenic not near genes chr3L 11433044 intergenic not near genes chr3L_38_11430001 chr3L_11430001 RAL-819 2019 chr3L 11435535 11435591 chr3L 11435729 11435785 48 194 11.5 13.5 12.5 3.6 250 chr3L 11435535 intergenic CG6149 -,CR44548 + chr3L 11435660 5` UTR CR44548 + chr3L 11435785 5` UTR CR44548 + chr3L_48_11435001 chr3L_11435001 RAL-819 2020 chr3L 11441361 11441372 chr3L 11441465 11441476 6 103 0.0 8.5 4.2 1.2 115 chr3L 11441361 intergenic not near genes chr3L 11441418 intergenic not near genes chr3L 11441476 intergenic not near genes chr3L_6_11440001 chr3L_11440001 RAL-819 2021 chr3L 11456884 11456915 chr3L 11457009 11457035 21 121 15.0 16.0 15.5 1.3 151 chr3L 11456884 intergenic CG12289 - chr3L 11456960 intergenic CG12289 - chr3L 11457035 intergenic CG12289 - chr3L_21_11455001 chr3L_11455001 RAL-819 2022 chr3L 11483772 11483796 chr3L 11483874 11483881 17 101 8.0 0.0 4.0 3.4 109 chr3L 11483772 intergenic not near genes chr3L 11483826 intergenic not near genes chr3L 11483881 intergenic not near genes chr3L_17_11480001 chr3L_11480001 RAL-819 2023 chr3L 11528208 11528224 chr3L 11528314 11528330 11 106 22.5 15.5 19.0 0.6 122 chr3L 11528208 intron Mob2 - chr3L 11528269 intron Mob2 - chr3L 11528330 intron Mob2 - chr3L_11_11525001 chr3L_11525001 RAL-819 2024 chr3L 11528226 11528260 chr3L 11528332 11528366 17 106 13.0 25.5 19.2 0.8 140 chr3L 11528226 intron Mob2 - chr3L 11528296 intron Mob2 - chr3L 11528366 intron Mob2 - chr3L_17_11525001 chr3L_11525001 RAL-819 2025 chr3L 11534806 11534819 chr3L 11534920 11534928 6 111 42.5 14.0 28.2 0.2 122 chr3L 11534806 intron Mob2 - chr3L 11534867 intron Mob2 - chr3L 11534928 intron Mob2 - chr3L_6_11530001 chr3L_11530001 RAL-819 2026 chr3L 11534823 11534859 chr3L 11534917 11534968 29 104 17.5 12.0 14.8 1.8 145 chr3L 11534823 intron Mob2 - chr3L 11534896 intron Mob2 - chr3L 11534968 intron Mob2 - chr3L_29_11530001 chr3L_11530001 RAL-819 2027 chr3L 11553702 11553756 chr3L 11553829 11553883 37 126 7.5 12.0 9.8 3.4 181 chr3L 11553702 intron Mob2 - chr3L 11553792 intron Mob2 - chr3L 11553883 intron Mob2 - chr3L_37_11550001 chr3L_11550001 RAL-819 2028 chr3L 11564792 11564797 chr3L 11572421 11572434 412 5 7642 19.5 34.5 27.0 0.2 7642 chr3L 11564792 exon CG33267 + chr3L 11568613 intron CG33267 + chr3L 11572434 exon CG33267 + chr3L_5_11565001 chr3L_11565001 RAL-819 2029 chr3L 11590244 11590270 chr3L 11590359 11590385 19 115 3.0 7.5 5.2 3.1 141 chr3L 11590244 intergenic CG7377 + chr3L 11590314 intergenic CG7377 + chr3L 11590385 intergenic CG7377 +,CG33268 - chr3L_19_11590001 chr3L_11590001 RAL-819 2030 chr3L 11663727 11663757 chr3L 11663877 11663907 12 150 14.0 1.5 7.8 1.4 180 chr3L 11663727 intron CG32085 - chr3L 11663817 intron CG32085 - chr3L 11663907 intron CG32085 - chr3L_12_11660001 chr3L_11660001 RAL-819 2031 chr3L 11676773 11676827 chr3L 11676878 11676934 48 104 11.5 13.5 12.5 3.6 161 chr3L 11676773 intron CG32085 - chr3L 11676854 intron CG32085 - chr3L 11676934 intron CG32085 - chr3L_48_11675001 chr3L_11675001 RAL-819 2032 chr3L 11678058 11678085 chr3L 11678182 11678209 4 124 15.5 0.0 7.8 0.5 151 chr3L 11678058 intron CG32085 - chr3L 11678134 intron CG32085 - chr3L 11678209 intron CG32085 - chr3L_4_11675001 chr3L_11675001 RAL-819 2033 chr3L 11723067 11723111 chr3L 11727887 11727930 Doc 36 4819 11.0 17.5 14.2 2.4 4863 chr3L 11723067 3` UTR Bmcp + chr3L 11725498 intron Bmcp + chr3L 11727930 3` UTR Bmcp + chr3L_36_11725001 chr3L_11725001 RAL-819 2034 chr3L 11743993 11744044 chr3L 11744126 11744177 17 133 14.0 11.5 12.8 1.2 184 chr3L 11743993 exon CG6024 - chr3L 11744085 intron CG6024 - chr3L 11744177 intron CG6024 - chr3L_17_11740001 chr3L_11740001 RAL-819 2035 chr3L 11757897 11757938 chr3L 11758017 11758025 13 118 17.0 0.0 8.5 1.4 128 chr3L 11757897 intron CG6024 - chr3L 11757961 intron CG6024 - chr3L 11758025 intron CG6024 - chr3L_13_11755001 chr3L_11755001 RAL-819 2036 chr3L 802565 802566 chr3L 11777678 11777678 16 10975112 63.0 42.0 52.5 0.3 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_16_6290001 chr3L_6290001 RAL-819 2037 chr3L 7749471 7749471 chr3L 11777678 11777678 14 4028207 31.0 42.0 36.5 0.4 4028207 chr3L 7749471 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_14_9760001 chr3L_9760001 RAL-819 2038 chr3L 9313026 9313027 chr3L 11777678 11777678 11 2464652 38.0 42.0 40.0 0.3 2464652 chr3L 9313026 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_11_10545001 chr3L_10545001 RAL-819 2039 chr3L 11777678 11777678 chr3L 12163305 12163305 9 385627 41.0 53.0 47.0 0.2 385627 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 11970492 exon Muc68E - chr3L 12163305 intron CG9760 - chr3L_9_11970001 chr3L_11970001 RAL-819 2040 chr3L 11811430 11811488 chr3L 11811533 11811591 38 102 12.5 16.0 14.2 2.5 161 chr3L 11811430 intron CG42255 - chr3L 11811510 intron CG42255 - chr3L 11811591 exon CG42255 - chr3L_38_11810001 chr3L_11810001 RAL-819 2041 chr3L 11849306 11849357 chr3L 11849431 11849482 37 123 10.0 12.5 11.2 3.0 176 chr3L 11849306 intergenic not near genes chr3L 11849394 intergenic not near genes chr3L 11849482 intergenic not near genes chr3L_37_11845001 chr3L_11845001 RAL-819 2042 chr3L 11887233 11887288 chr3L 11887355 11887419 15 124 9.0 0.0 4.5 2.7 186 chr3L 11887233 intron CG44837 - chr3L 11887326 intron,3` UTR CG44837 -,CG5897 - chr3L 11887419 intron,3` UTR CG44837 -,CG5897 - chr3L_15_11885001 chr3L_11885001 RAL-819 2043 chr3L 11943468 11943521 chr3L 11943594 11943647 51 125 11.5 12.5 12.0 3.9 179 chr3L 11943468 3` UTR Rpt4R + chr3L 11943558 intergenic Rpt4R +,CG5883 - chr3L 11943647 3` UTR CG5883 - chr3L_51_11940001 chr3L_11940001 RAL-819 2044 chr3L 12013886 12013937 chr3L 12014002 12014053 35 113 8.0 10.5 9.2 3.4 167 chr3L 12013886 intron rols - chr3L 12013970 intron rols - chr3L 12014053 intron rols - chr3L_35_12010001 chr3L_12010001 RAL-819 2045 chr3L 12019317 12019351 chr3L 12019440 12019489 27 135 7.0 17.0 12.0 2.1 172 chr3L 12019317 intron rols - chr3L 12019403 intron rols - chr3L 12019489 intron rols - chr3L_27_12015001 chr3L_12015001 RAL-819 2046 chr3L 12046057 12046064 chr3L 12046160 12046167 6 103 24.5 9.0 16.8 0.3 110 chr3L 12046057 intron rols - chr3L 12046112 intron rols - chr3L 12046167 intron rols - chr3L_6_12045001 chr3L_12045001 RAL-819 2047 chr3L 12046071 12046111 chr3L 12046158 12046214 24 98 9.5 8.5 9.0 2.4 143 chr3L 12046071 intron rols - chr3L 12046142 intron rols - chr3L 12046214 intron rols - chr3L_24_12045001 chr3L_12045001 RAL-819 2048 chr3L 12052685 12052738 chr3L 12052793 12052852 46 110 12.0 14.0 13.0 3.3 167 chr3L 12052685 intron rols - chr3L 12052768 intron rols - chr3L 12052852 intron rols - chr3L_46_12050001 chr3L_12050001 RAL-819 2049 chr3L 12075401 12075460 chr3L 12075515 12075568 31 111 13.5 0.5 7.0 3.9 167 chr3L 12075401 intron Sema-5c - chr3L 12075484 intron Sema-5c - chr3L 12075568 intron Sema-5c - chr3L_31_12075001 chr3L_12075001 RAL-819 2050 chr3L 12083940 12083966 chr3L 12084099 12084125 7 159 62.5 9.0 35.8 0.2 185 chr3L 12083940 intergenic not near genes chr3L 12084032 intergenic not near genes chr3L 12084125 intergenic not near genes chr3L_7_12080001 chr3L_12080001 RAL-819 2051 chr3L 12083937 12083965 chr3L 12084128 12084138 11 166 62.5 0.0 31.2 0.3 201 chr3L 12083937 intergenic not near genes chr3L 12084038 intergenic not near genes chr3L 12084138 intergenic not near genes chr3L_11_12080001 chr3L_12080001 RAL-819 2052 chr3L 12089055 12089110 chr3L 12089160 12089215 51 103 11.0 11.5 11.2 4.2 160 chr3L 12089055 exon CG17154 + chr3L 12089135 3` UTR CG17154 + chr3L 12089215 3` UTR CG17154 + chr3L_51_12085001 chr3L_12085001 RAL-819 2053 chr3L 12092382 12092392 chr3L 12092484 12092494 7 102 10.0 9.5 9.8 0.6 112 chr3L 12092382 intergenic not near genes chr3L 12092438 intergenic not near genes chr3L 12092494 intergenic not near genes chr3L_7_12090001 chr3L_12090001 RAL-819 2054 chr3L 12092401 12092421 chr3L 12092478 12092523 12 98 4.0 6.5 5.2 1.9 122 chr3L 12092401 intergenic not near genes chr3L 12092462 intergenic not near genes chr3L 12092523 intergenic not near genes chr3L_12_12090001 chr3L_12090001 RAL-819 2055 chr3L 12119740 12119761 chr3L 12119857 12119883 10 122 19.5 11.5 15.5 0.6 143 chr3L 12119740 3` UTR ssp + chr3L 12119812 intergenic ssp +,CG11560 + chr3L 12119883 intergenic ssp +,CG11560 + chr3L_10_12115001 chr3L_12115001 RAL-819 2056 chr3L 12119762 12119791 chr3L 12119855 12119913 20 120 9.5 11.5 10.5 1.7 151 chr3L 12119762 3` UTR ssp + chr3L 12119838 intergenic ssp +,CG11560 + chr3L 12119913 intergenic CG11560 +,ssp + chr3L_20_12115001 chr3L_12115001 RAL-819 2057 chr3L 12219541 12219594 chr3L 12219649 12219684 54 104 15.0 15.0 15.0 3.4 143 chr3L 12219541 intron app - chr3L 12219612 intron app - chr3L 12219684 intron app - chr3L_54_12215001 chr3L_12215001 RAL-819 2058 chr3L 12286798 12286844 chr3L 12286898 12286928 41 101 1.0 20.0 10.5 3.6 130 chr3L 12286798 intergenic not near genes chr3L 12286863 intergenic not near genes chr3L 12286928 intergenic not near genes chr3L_41_12285001 chr3L_12285001 RAL-819 2059 chr3L 12290223 12290232 chr3L 12290338 12290347 9 115 22.0 0.0 11.0 0.8 124 chr3L 12290223 intergenic CR45658 - chr3L 12290285 intergenic CR45658 - chr3L 12290347 intergenic CR45658 - chr3L_9_12290001 chr3L_12290001 RAL-819 2060 chr3L 12369510 12369569 chr3L 12369625 12369631 47 113 9.5 10.0 9.8 4.4 121 chr3L 12369510 intron Ncc69 - chr3L 12369570 intron Ncc69 - chr3L 12369631 intron Ncc69 - chr3L_47_12365001 chr3L_12365001 RAL-819 2061 chr3L 12388002 12388011 chr3L 12388104 12388113 5 102 0.5 14.0 7.2 0.6 111 chr3L 12388002 intron Ncc69 - chr3L 12388058 intron Ncc69 - chr3L 12388113 intron Ncc69 - chr3L_5_12385001 chr3L_12385001 RAL-819 2062 chr3L 12412897 12412924 chr3L 12413003 12413031 31 106 15.5 9.0 12.2 2.3 134 chr3L 12412897 intron CG32103 - chr3L 12412964 intron CG32103 - chr3L 12413031 intron CG32103 - chr3L_31_12410001 chr3L_12410001 RAL-819 2063 chr3L 12435553 12435588 chr3L 12435654 12435654 25 95 23.5 26.0 24.8 1.0 101 chr3L 12435553 intergenic not near genes chr3L 12435604 intergenic not near genes chr3L 12435654 intergenic not near genes chr3L_25_12435001 chr3L_12435001 RAL-819 2064 chr3L 12435590 12435605 chr3L 12435652 12435664 11 85 20.5 27.5 24.0 0.4 74 chr3L 12435590 intergenic not near genes chr3L 12435627 intergenic not near genes chr3L 12435664 intergenic not near genes chr3L_11_12435001 chr3L_12435001 RAL-819 2065 chr3L 12453608 12453661 chr3L 12453718 12453770 6 110 0.0 5.5 2.8 1.6 162 chr3L 12453608 intergenic not near genes chr3L 12453689 intergenic not near genes chr3L 12453770 intergenic not near genes chr3L_6_12450001 chr3L_12450001 RAL-819 2066 chr3L 12458490 12458509 chr3L 12458614 12458633 10 124 5.0 18.0 11.5 0.8 143 chr3L 12458490 intergenic not near genes chr3L 12458562 intergenic not near genes chr3L 12458633 intergenic not near genes chr3L_10_12455001 chr3L_12455001 RAL-819 2067 chr3L 12460309 12460328 chr3L 12460404 12460430 21 101 0.0 11.5 5.8 3.1 121 chr3L 12460309 intergenic not near genes chr3L 12460370 intergenic not near genes chr3L 12460430 intergenic not near genes chr3L_21_12460001 chr3L_12460001 RAL-819 2068 chr3L 12460330 12460343 chr3L 12460400 12460445 12 97 2.0 10.0 6.0 1.7 115 chr3L 12460330 intergenic not near genes chr3L 12460388 intergenic not near genes chr3L 12460445 intergenic not near genes chr3L_12_12460001 chr3L_12460001 RAL-819 2069 chr3L 12467234 12467244 chr3L 12467344 12467354 10 110 10.0 9.5 9.8 0.9 120 chr3L 12467234 intron eyg - chr3L 12467294 intron eyg - chr3L 12467354 intron eyg - chr3L_10_12465001 chr3L_12465001 RAL-819 2070 chr3L 12467247 12467284 chr3L 12467342 12467394 21 109 0.0 9.0 4.5 3.8 147 chr3L 12467247 intron eyg - chr3L 12467320 intron eyg - chr3L 12467394 intron eyg - chr3L_21_12465001 chr3L_12465001 RAL-819 2071 chr3L 12491678 12491734 chr3L 12491786 12491842 9 104 0.0 8.0 4.0 1.8 164 chr3L 12491678 intergenic CG10657 -,CR45682 +,CR45681 + chr3L 12491760 intergenic CG10657 -,CR45682 + chr3L 12491842 3` UTR,5` UTR CG10657 -,CR45682 + chr3L_9_12490001 chr3L_12490001 RAL-819 2072 chr3L 12504111 12504139 chr3L 12504200 12504248 13 107 0.0 16.5 8.2 1.4 137 chr3L 12504111 intergenic vih +,CG10646 - chr3L 12504180 intergenic vih +,CG10646 - chr3L 12504248 intergenic vih +,CG10646 - chr3L_13_12500001 chr3L_12500001 RAL-819 2073 chr3L 12578022 12578081 chr3L 12578135 12578194 19 111 4.5 0.0 2.2 5.9 172 chr3L 12578022 intergenic not near genes chr3L 12578108 intergenic not near genes chr3L 12578194 intergenic not near genes chr3L_19_12575001 chr3L_12575001 RAL-819 2074 chr3L 12626131 12626160 chr3L 12626265 12626294 24 134 4.5 10.0 7.2 2.9 163 chr3L 12626131 intergenic not near genes chr3L 12626212 intergenic not near genes chr3L 12626294 intergenic not near genes chr3L_24_12625001 chr3L_12625001 RAL-819 2075 chr3L 12643238 12643288 chr3L 12643424 12643471 32 189 14.0 11.0 12.5 2.4 233 chr3L 12643238 intron CR32111 + chr3L 12643354 intron CR32111 + chr3L 12643471 intron CR32111 + chr3L_32_12640001 chr3L_12640001 RAL-819 2076 chr3L 12647924 12647971 chr3L 12648025 12648064 18 96 17.0 5.0 11.0 1.5 140 chr3L 12647924 5` UTR CR32111 + chr3L 12647994 5` UTR CR32111 + chr3L 12648064 5` UTR CR32111 + chr3L_18_12645001 chr3L_12645001 RAL-819 2077 chr3L 12706617 12706656 chr3L 12706769 12706808 31 151 18.5 17.5 18.0 1.6 191 chr3L 12706617 intron mirr + chr3L 12706712 intron mirr + chr3L 12706808 intron mirr + chr3L_31_12705001 chr3L_12705001 RAL-819 2078 chr3L 12728011 12728042 chr3L 12728120 12728151 10 108 9.5 27.0 18.2 0.5 140 chr3L 12728011 intergenic not near genes chr3L 12728081 intergenic not near genes chr3L 12728151 intergenic not near genes chr3L_10_12725001 chr3L_12725001 RAL-819 2079 chr3L 12799814 12799819 chr3L 12799947 12799952 5 133 16.5 26.0 21.2 0.2 138 chr3L 12799814 intron Atg1 - chr3L 12799883 intron Atg1 - chr3L 12799952 intron Atg1 - chr3L_5_12795001 chr3L_12795001 RAL-819 2080 chr3L 12799820 12799833 chr3L 12799945 12799966 10 132 13.0 25.0 19.0 0.5 146 chr3L 12799820 intron Atg1 - chr3L 12799893 intron Atg1 - chr3L 12799966 intron Atg1 - chr3L_10_12795001 chr3L_12795001 RAL-819 2081 chr3L 12857968 12858004 chr3L 12858088 12858119 20 120 3.0 5.5 4.2 3.8 151 chr3L 12857968 3` UTR CG32107 - chr3L 12858044 3` UTR CG32107 - chr3L 12858119 3` UTR CG32107 - chr3L_20_12855001 chr3L_12855001 RAL-819 2082 chr3L 12874900 12874959 chr3L 12877217 12877258 jockey 31 2315 9.0 8.5 8.8 3.2 2358 chr3L 12874900 intergenic not near genes chr3L 12876079 intergenic not near genes chr3L 12877258 intergenic not near genes chr3L_31_12875001 chr3L_12875001 RAL-819 2083 chr3L 12884110 12884146 chr3L 12884218 12884255 28 108 11.5 17.5 14.5 1.8 145 chr3L 12884110 intergenic not near genes chr3L 12884182 intergenic not near genes chr3L 12884255 intergenic not near genes chr3L_28_12880001 chr3L_12880001 RAL-819 2084 chr3L 12892900 12892910 chr3L 12893031 12893041 8 131 11.5 14.0 12.8 0.6 141 chr3L 12892900 intron CG14118 + chr3L 12892970 intron CG14118 + chr3L 12893041 intron CG14118 + chr3L_8_12890001 chr3L_12890001 RAL-819 2085 chr3L 12894784 12894786 chr3L 12894887 12894889 4 103 35.0 31.5 33.2 0.1 105 chr3L 12894784 intergenic CG14118 + chr3L 12894836 intergenic CG14118 + chr3L 12894889 intergenic CG14118 + chr3L_4_12890001 chr3L_12890001 RAL-819 2086 chr3L 12894788 12894816 chr3L 12894881 12894884 21 97 28.0 30.5 29.2 0.7 96 chr3L 12894788 intergenic CG14118 + chr3L 12894836 intergenic CG14118 + chr3L 12894884 intergenic CG14118 + chr3L_21_12890001 chr3L_12890001 RAL-819 2087 chr3L 12919262 12919277 chr3L 12924750 12924750 Rt1c 12 5490 31.0 16.0 23.5 0.5 5488 chr3L 12919262 intergenic not near genes chr3L 12922006 intergenic not near genes chr3L 12924750 intergenic not near genes chr3L_12_12920001 chr3L_12920001 RAL-819 2088 chr3L 12919283 12919305 chr3L 12924745 12924773 Rt1c 7 5478 16.5 15.5 16.0 0.4 5490 chr3L 12919283 intergenic not near genes chr3L 12922028 intergenic not near genes chr3L 12924773 intergenic not near genes chr3L_7_12920001 chr3L_12920001 RAL-819 2089 chr3L 12957787 12957791 chr3L 12962294 12962298 copia 4 4507 23.0 20.5 21.8 0.2 4511 chr3L 12957787 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962298 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-819 2090 chr3L 12957792 12957795 chr3L 12962292 12962302 copia 6 4504 22.5 20.0 21.2 0.3 4510 chr3L 12957792 intergenic not near genes chr3L 12960047 intergenic not near genes chr3L 12962302 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-819 2091 chr3L 12957799 12957816 chr3L 12962273 12962319 copia 15 4501 12.0 15.5 13.8 1.0 4520 chr3L 12957799 intergenic not near genes chr3L 12960059 intergenic not near genes chr3L 12962319 intergenic not near genes chr3L_15_12960001 chr3L_12960001 RAL-819 2092 chr3L 13007668 13007723 chr3L 13007772 13007827 43 103 8.5 1.0 4.8 7.4 159 chr3L 13007668 exon CG11263 + chr3L 13007748 3` UTR CG11263 + chr3L 13007827 3` UTR CG11263 + chr3L_43_13005001 chr3L_13005001 RAL-819 2093 chr3L 13017894 13017917 chr3L 13018001 13018010 21 106 12.5 17.0 14.8 1.3 116 chr3L 13017894 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13017952 intergenic mRpL20 -,ste14 +,CR45445 - chr3L 13018010 intergenic mRpL20 -,ste14 +,CR45445 - chr3L_21_13015001 chr3L_13015001 RAL-819 2094 chr3L 13050542 13050595 chr3L 13050646 13050686 41 102 10.0 14.5 12.2 3.1 144 chr3L 13050542 intergenic not near genes chr3L 13050614 intergenic not near genes chr3L 13050686 intergenic not near genes chr3L_41_13050001 chr3L_13050001 RAL-819 2095 chr3L 13069534 13069589 chr3L 13069637 13069693 38 103 9.5 8.0 8.8 3.9 159 chr3L 13069534 intergenic not near genes chr3L 13069614 intergenic not near genes chr3L 13069693 intergenic not near genes chr3L_38_13065001 chr3L_13065001 RAL-819 2096 chr3L 13159266 13159297 chr3L 13159370 13159401 19 104 11.5 10.0 10.8 1.6 135 chr3L 13159266 intergenic not near genes chr3L 13159334 intergenic not near genes chr3L 13159401 intergenic not near genes chr3L_19_13155001 chr3L_13155001 RAL-819 2097 chr3L 13171362 13171398 chr3L 13171466 13171501 24 102 9.5 18.5 14.0 1.6 139 chr3L 13171362 intergenic not near genes chr3L 13171432 intergenic not near genes chr3L 13171501 intergenic not near genes chr3L_24_13170001 chr3L_13170001 RAL-819 2098 chr3L 13172528 13172577 chr3L 13172916 13172966 35 382 11.5 8.5 10.0 3.2 438 chr3L 13172528 intergenic not near genes chr3L 13172747 intergenic not near genes chr3L 13172966 intergenic not near genes chr3L_35_13170001 chr3L_13170001 RAL-819 2099 chr3L 13206210 13206233 chr3L 13206316 13206339 17 104 10.0 8.5 9.2 1.7 129 chr3L 13206210 intergenic not near genes chr3L 13206274 intergenic not near genes chr3L 13206339 intergenic not near genes chr3L_17_13205001 chr3L_13205001 RAL-819 2100 chr3L 13223204 13223217 chr3L 13223306 13223319 5 101 11.0 24.0 17.5 0.3 115 chr3L 13223204 intergenic not near genes chr3L 13223262 intergenic not near genes chr3L 13223319 intergenic not near genes chr3L_5_13220001 chr3L_13220001 RAL-819 2101 chr3L 13223220 13223243 chr3L 13223297 13223345 12 99 3.5 19.5 11.5 1.0 125 chr3L 13223220 intergenic not near genes chr3L 13223282 intergenic not near genes chr3L 13223345 intergenic not near genes chr3L_12_13220001 chr3L_13220001 RAL-819 2102 chr3L 13235735 13235778 chr3L 13235832 13235887 35 101 11.0 9.5 10.2 3.1 152 chr3L 13235735 intron caps + chr3L 13235811 intron caps + chr3L 13235887 intron caps + chr3L_35_13235001 chr3L_13235001 RAL-819 2103 chr3L 13264767 13264778 chr3L 13264868 13264879 11 101 20.5 3.5 12.0 0.8 112 chr3L 13264767 intron caps + chr3L 13264823 intron caps + chr3L 13264879 intron caps + chr3L_11_13260001 chr3L_13260001 RAL-819 2104 chr3L 13267260 13267317 chr3L 13267398 13267455 49 135 15.5 10.0 12.8 3.6 195 chr3L 13267260 intron caps + chr3L 13267358 intron caps + chr3L 13267455 intron caps + chr3L_49_13265001 chr3L_13265001 RAL-819 2105 chr3L 13327458 13327469 chr3L 13327987 13328004 9 534 0.0 11.5 5.8 1.3 546 chr3L 13327458 intergenic not near genes chr3L 13327731 intergenic not near genes chr3L 13328004 intergenic not near genes chr3L_9_13325001 chr3L_13325001 RAL-819 2106 chr3L 13337144 13337158 chr3L 13337260 13337274 8 116 8.0 12.5 10.2 0.7 130 chr3L 13337144 intergenic not near genes chr3L 13337209 intergenic not near genes chr3L 13337274 intergenic not near genes chr3L_8_13335001 chr3L_13335001 RAL-819 2107 chr3L 13455727 13455784 chr3L 13455907 13455964 45 177 6.5 7.5 7.0 5.6 237 chr3L 13455727 intron CG10738 + chr3L 13455846 intron CG10738 + chr3L 13455964 intron CG10738 + chr3L_45_13455001 chr3L_13455001 RAL-819 2108 chr3L 13525135 13525185 chr3L 13532956 13533000 roo 23 7819 7.0 10.0 8.5 2.4 7865 chr3L 13525135 intergenic not near genes chr3L 13529068 intergenic not near genes chr3L 13533000 intergenic not near genes chr3L_23_13525001 chr3L_13525001 RAL-819 2109 chr3L 13535883 13535931 chr3L 13535984 13536032 20 100 10.0 5.0 7.5 2.4 149 chr3L 13535883 intergenic not near genes chr3L 13535958 intergenic not near genes chr3L 13536032 intergenic not near genes chr3L_20_13535001 chr3L_13535001 RAL-819 2110 chr3L 13574606 13574620 chr3L 13580136 13580156 Rt1c 14 5532 26.0 19.0 22.5 0.6 5550 chr3L 13574606 intron bru-3 - chr3L 13577381 intron bru-3 - chr3L 13580156 intron bru-3 - chr3L_14_13575001 chr3L_13575001 RAL-819 2111 chr3L 13595001 13595040 chr3L 13595106 13595145 32 101 6.0 19.0 12.5 2.4 144 chr3L 13595001 intron bru-3 - chr3L 13595073 intron bru-3 - chr3L 13595145 intron bru-3 - chr3L_32_13595001 chr3L_13595001 RAL-819 2112 chr3L 13598191 13598206 chr3L 13598291 13598303 10 100 28.0 2.5 15.2 0.6 112 chr3L 13598191 intron bru-3 - chr3L 13598247 intron bru-3 - chr3L 13598303 intron bru-3 - chr3L_10_13595001 chr3L_13595001 RAL-819 2113 chr3L 13677505 13677562 chr3L 13677607 13677664 39 101 10.5 12.5 11.5 3.1 159 chr3L 13677505 intron bru-3 - chr3L 13677584 intron bru-3 - chr3L 13677664 intron bru-3 - chr3L_39_13675001 chr3L_13675001 RAL-819 2114 chr3L 13740007 13740053 chr3L 13740124 13740169 14 116 7.0 15.5 11.2 1.1 162 chr3L 13740007 intron bru-3 - chr3L 13740088 intron bru-3 - chr3L 13740169 intron bru-3 - chr3L_14_13740001 chr3L_13740001 RAL-819 2115 chr3L 13754403 13754452 chr3L 13754504 13754554 38 101 10.5 8.0 9.2 3.7 151 chr3L 13754403 intron bru-3 - chr3L 13754478 intron bru-3 - chr3L 13754554 intron bru-3 - chr3L_38_13750001 chr3L_13750001 RAL-819 2116 chr3L 13804524 13804572 chr3L 13822835 13822883 roo 29 18308 11.0 10.5 10.8 2.5 18359 chr3L 13804524 intergenic not near genes chr3L 13813704 intergenic not near genes chr3L 13822883 intergenic not near genes chr3L_29_13810001 chr3L_13810001 RAL-819 2117 chr3L 13884357 13884387 chr3L 13884473 13884503 23 115 24.5 17.0 20.8 1.1 146 chr3L 13884357 intron dysc - chr3L 13884430 intron dysc - chr3L 13884503 intron dysc - chr3L_23_13880001 chr3L_13880001 RAL-819 2118 chr3L 13920396 13920432 chr3L 13920501 13920537 24 103 9.5 6.5 8.0 2.7 141 chr3L 13920396 intron Rgl - chr3L 13920466 intron Rgl - chr3L 13920537 intron Rgl - chr3L_24_13920001 chr3L_13920001 RAL-819 2119 chr3L 13931309 13931371 chr3L 13931439 13931501 12 130 2.5 0.5 1.5 4.8 192 chr3L 13931309 intron Gl + chr3L 13931405 intron Gl + chr3L 13931501 intron Gl + chr3L_12_13930001 chr3L_13930001 RAL-819 2120 chr3L 13954448 13954451 chr3L 13954552 13954555 4 104 7.5 27.5 17.5 0.2 107 chr3L 13954448 intron CG32137 + chr3L 13954502 intron CG32137 + chr3L 13954555 intron CG32137 + chr3L_4_13950001 chr3L_13950001 RAL-819 2121 chr3L 13993985 13993996 chr3L 13994090 13994101 5 105 13.5 7.5 10.5 0.4 116 chr3L 13993985 intergenic 26-29-p + chr3L 13994043 intergenic 26-29-p + chr3L 13994101 intergenic 26-29-p + chr3L_5_13990001 chr3L_13990001 RAL-819 2122 chr3L 14004415 14004419 chr3L 14004519 14004523 4 104 24.5 8.5 16.5 0.2 108 chr3L 14004415 intron upSET + chr3L 14004469 intron upSET + chr3L 14004523 intron upSET + chr3L_4_14000001 chr3L_14000001 RAL-819 2123 chr3L 14004421 14004466 chr3L 14004518 14004570 41 100 9.0 8.0 8.5 4.3 149 chr3L 14004421 intron upSET + chr3L 14004496 intron upSET + chr3L 14004570 intron upSET + chr3L_41_14000001 chr3L_14000001 RAL-819 2124 chr3L 14126300 14126358 chr3L 14126515 14126573 59 211 10.5 13.5 12.0 4.5 273 chr3L 14126300 intron Sox21b - chr3L 14126436 intron Sox21b - chr3L 14126573 intron Sox21b - chr3L_59_14125001 chr3L_14125001 RAL-819 2125 chr3L 14129464 14129514 chr3L 14129567 14129610 46 102 6.0 8.5 7.2 5.6 146 chr3L 14129464 intron Sox21b - chr3L 14129537 intron Sox21b - chr3L 14129610 intron Sox21b - chr3L_46_14125001 chr3L_14125001 RAL-819 2126 chr3L 14141383 14141391 chr3L 14141497 14141505 7 114 17.0 0.0 8.5 0.7 122 chr3L 14141383 intergenic not near genes chr3L 14141444 intergenic not near genes chr3L 14141505 intergenic not near genes chr3L_7_14140001 chr3L_14140001 RAL-819 2127 chr3L 14159419 14159452 chr3L 14159521 14159554 20 101 8.5 9.5 9.0 2.0 135 chr3L 14159419 intergenic not near genes chr3L 14159486 intergenic not near genes chr3L 14159554 intergenic not near genes chr3L_20_14155001 chr3L_14155001 RAL-819 2128 chr3L 14194697 14194742 chr3L 14194798 14194843 30 100 10.5 9.5 10.0 2.7 146 chr3L 14194697 intron nuf + chr3L 14194770 intron nuf + chr3L 14194843 intron nuf + chr3L_30_14190001 chr3L_14190001 RAL-819 2129 chr3L 14236025 14236067 chr3L 14236187 14236199 27 160 13.5 15.5 14.5 1.7 174 chr3L 14236025 intergenic CG34244 - chr3L 14236112 intergenic CG34244 - chr3L 14236199 intergenic CG34244 -,CG7906 + chr3L_27_14235001 chr3L_14235001 RAL-819 2130 chr3L 14245547 14245591 chr3L 14245666 14245705 1360 36 118 16.5 10.5 13.5 2.5 158 chr3L 14245547 3` UTR CR44561 - chr3L 14245626 3` UTR CR44561 - chr3L 14245705 intergenic CR44561 -,CR44560 + chr3L_36_14245001 chr3L_14245001 RAL-819 2131 chr3L 14282561 14282607 chr3L 14282666 14282712 41 103 19.5 19.0 19.2 2.0 151 chr3L 14282561 intron fz + chr3L 14282636 intron fz + chr3L 14282712 intron fz + chr3L_41_14280001 chr3L_14280001 RAL-819 2132 chr3L 14286633 14286677 chr3L 14286736 14286771 31 101 16.0 10.5 13.2 2.2 138 chr3L 14286633 intron fz + chr3L 14286702 intron fz + chr3L 14286771 intron fz + chr3L_31_14285001 chr3L_14285001 RAL-819 2133 chr3L 14295958 14295983 chr3L 14296469 14296494 roo 16 507 24.0 17.5 20.8 0.7 536 chr3L 14295958 intron fz + chr3L 14296226 intron fz + chr3L 14296494 intron fz + chr3L_16_14295001 chr3L_14295001 RAL-819 2134 chr3L 14295984 14296014 chr3L 14296467 14296525 roo 28 503 16.0 17.0 16.5 1.6 541 chr3L 14295984 intron fz + chr3L 14296254 intron fz + chr3L 14296525 intron fz + chr3L_28_14295001 chr3L_14295001 RAL-819 2135 chr3L 14311998 14312021 chr3L 14316837 14316860 X-element 7 4839 21.5 18.0 19.8 0.3 4862 chr3L 14311998 exon fz + chr3L 14314429 intron fz + chr3L 14316860 intron fz + chr3L_7_14310001 chr3L_14310001 RAL-819 2136 chr3L 14312025 14312055 chr3L 14316833 14316878 X-element 25 4823 8.5 17.0 12.8 1.8 4853 chr3L 14312025 exon fz + chr3L 14314452 intron fz + chr3L 14316878 intron fz + chr3L_25_14310001 chr3L_14310001 RAL-819 2137 chr3L 14356496 14356506 chr3L 14356601 14356611 12 105 25.0 6.0 15.5 0.7 115 chr3L 14356496 intron fz + chr3L 14356554 intron fz + chr3L 14356611 intron fz + chr3L_12_14355001 chr3L_14355001 RAL-819 2138 chr3L 14356509 14356553 chr3L 14356599 14356658 38 103 11.5 6.0 8.8 3.9 149 chr3L 14356509 intron fz + chr3L 14356584 intron fz + chr3L 14356658 intron fz + chr3L_38_14355001 chr3L_14355001 RAL-819 2139 chr3L 14395627 14395666 chr3L 14395756 14395795 14 123 11.5 3.5 7.5 1.6 168 chr3L 14395627 intergenic not near genes chr3L 14395711 intergenic not near genes chr3L 14395795 intergenic not near genes chr3L_14_14395001 chr3L_14395001 RAL-819 2140 chr3L 14429979 14430011 chr3L 14430082 14430114 10 103 5.0 8.5 6.8 1.3 135 chr3L 14429979 intron bbg - chr3L 14430046 intron bbg - chr3L 14430114 intron bbg - chr3L_10_14430001 chr3L_14430001 RAL-819 2141 chr3L 14440743 14440772 chr3L 14440853 14440882 12 110 6.5 10.0 8.2 1.3 139 chr3L 14440743 intron bbg - chr3L 14440812 intron bbg - chr3L 14440882 intron bbg - chr3L_12_14440001 chr3L_14440001 RAL-819 2142 chr3L 14455344 14455389 chr3L 14455450 14455495 23 105 8.0 4.0 6.0 3.3 151 chr3L 14455344 intron bbg - chr3L 14455420 intron bbg - chr3L 14455495 intron bbg - chr3L_23_14455001 chr3L_14455001 RAL-819 2143 chr3L 14462879 14462907 chr3L 14462992 14463020 22 112 5.0 17.5 11.2 1.8 141 chr3L 14462879 intron bbg - chr3L 14462950 intron bbg - chr3L 14463020 intron bbg - chr3L_22_14460001 chr3L_14460001 RAL-819 2144 chr3L 14468428 14468439 chr3L 14473659 14473670 copia 11 5231 0.0 18.5 9.2 1.1 5242 chr3L 14468428 intron bbg - chr3L 14471049 intron bbg - chr3L 14473670 intron bbg - chr3L_11_14470001 chr3L_14470001 RAL-819 2145 chr3L 14468442 14468477 chr3L 14473655 14473708 copia 23 5228 0.0 16.5 8.2 2.5 5266 chr3L 14468442 intron bbg - chr3L 14471075 intron bbg - chr3L 14473708 intron bbg - chr3L_23_14470001 chr3L_14470001 RAL-819 2146 chr3L 14486134 14486167 chr3L 14486236 14486269 10 102 1.0 14.0 7.5 1.2 135 chr3L 14486134 intron bbg - chr3L 14486202 intron bbg - chr3L 14486269 intron bbg - chr3L_10_14485001 chr3L_14485001 RAL-819 2147 chr3L 14506854 14506906 chr3L 14507219 14507272 14 357 12.0 10.5 11.2 1.1 418 chr3L 14506854 intron bbg - chr3L 14507063 intron bbg - chr3L 14507272 intron bbg - chr3L_14_14505001 chr3L_14505001 RAL-819 2148 chr3L 14518983 14519005 chr3L 14519085 14519102 8 101 8.5 9.5 9.0 0.8 119 chr3L 14518983 intron bbg - chr3L 14519042 intron bbg - chr3L 14519102 intron bbg - chr3L_8_14515001 chr3L_14515001 RAL-819 2149 chr3L 14519009 14519024 chr3L 14519080 14519116 22 89 6.5 8.0 7.2 2.7 107 chr3L 14519009 intron bbg - chr3L 14519062 intron bbg - chr3L 14519116 intron bbg - chr3L_22_14515001 chr3L_14515001 RAL-819 2150 chr3L 14522080 14522086 chr3L 14522204 14522210 4 124 26.0 11.5 18.8 0.2 130 chr3L 14522080 intron bbg - chr3L 14522145 intron bbg - chr3L 14522210 intron bbg - chr3L_4_14520001 chr3L_14520001 RAL-819 2151 chr3L 14522087 14522130 chr3L 14522201 14522254 27 123 8.5 11.0 9.8 2.5 167 chr3L 14522087 intron bbg - chr3L 14522170 intron bbg - chr3L 14522254 intron bbg - chr3L_27_14520001 chr3L_14520001 RAL-819 2152 chr3L 14546766 14546817 chr3L 14546872 14546942 11 124 0.0 0.0 0.0 11.0 176 chr3L 14546766 intron CG9238 - chr3L 14546854 intron CG9238 - chr3L 14546942 intron CG9238 - chr3L_11_14545001 chr3L_14545001 RAL-819 2153 chr3L 14584133 14584188 chr3L 14584245 14584295 31 109 11.5 9.5 10.5 2.7 162 chr3L 14584133 intron HGTX - chr3L 14584214 intron HGTX - chr3L 14584295 intron HGTX - chr3L_31_14580001 chr3L_14580001 RAL-819 2154 chr3L 14596193 14596243 chr3L 14596314 14596364 8 120 2.0 10.5 6.2 1.1 171 chr3L 14596193 intron HGTX - chr3L 14596278 intron HGTX - chr3L 14596364 intron HGTX - chr3L_8_14595001 chr3L_14595001 RAL-819 2155 chr3L 14633760 14633818 chr3L 14633881 14633939 37 120 6.5 10.5 8.5 3.9 179 chr3L 14633760 intron dlp + chr3L 14633850 intron dlp + chr3L 14633939 intron dlp + chr3L_37_14630001 chr3L_14630001 RAL-819 2156 chr3L 14646939 14646985 chr3L 14647041 14647074 17 96 11.0 14.0 12.5 1.3 135 chr3L 14646939 intron dlp + chr3L 14647006 intron dlp + chr3L 14647074 intron dlp + chr3L_17_14645001 chr3L_14645001 RAL-819 2157 chr3L 14686411 14686465 chr3L 14686627 14686671 28 212 13.5 9.5 11.5 2.2 260 chr3L 14686411 intron ome + chr3L 14686541 intron ome + chr3L 14686671 intron ome + chr3L_28_14685001 chr3L_14685001 RAL-819 2158 chr3L 14702004 14702020 chr3L 14702108 14702124 11 103 0.0 13.0 6.5 1.5 120 chr3L 14702004 intron ome + chr3L 14702064 intron ome + chr3L 14702124 intron ome + chr3L_11_14700001 chr3L_14700001 RAL-819 2159 chr3L 14719754 14719812 chr3L 14719862 14719884 45 104 13.5 13.5 13.5 3.1 130 chr3L 14719754 intron ome + chr3L 14719819 intron ome + chr3L 14719884 intron ome + chr3L_45_14715001 chr3L_14715001 RAL-819 2160 chr3L 14721161 14721169 chr3L 14723029 14723031 Rt1c 6 1867 36.0 16.0 26.0 0.2 1870 chr3L 14721161 intron ome + chr3L 14722096 intron ome + chr3L 14723031 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-819 2161 chr3L 14721170 14721209 chr3L 14723024 14723048 Rt1c 25 1857 17.0 13.0 15.0 1.6 1878 chr3L 14721170 intron ome + chr3L 14722109 intron ome + chr3L 14723048 intron ome + chr3L_25_14720001 chr3L_14720001 RAL-819 2162 chr3L 14725583 14725621 chr3L 14728602 14728630 Doc 19 3018 15.0 25.0 20.0 0.9 3047 chr3L 14725583 intron ome + chr3L 14727106 intron ome + chr3L 14728630 intron ome + chr3L_19_14725001 chr3L_14725001 RAL-819 2163 chr3L 14825136 14825154 chr3L 14832888 14832906 Stalker2 15 7752 12.5 30.5 21.5 0.7 7770 chr3L 14825136 intron CG17839 + chr3L 14829021 intron CG17839 + chr3L 14832906 intron CG17839 + chr3L_15_14825001 chr3L_14825001 RAL-819 2164 chr3L 14844234 14844285 chr3L 14844350 14844401 37 112 7.5 9.5 8.5 3.9 167 chr3L 14844234 intron CG17839 + chr3L 14844318 intron CG17839 + chr3L 14844401 intron CG17839 + chr3L_37_14840001 chr3L_14840001 RAL-819 2165 chr3L 14852928 14852937 chr3L 14853037 14853046 7 109 17.5 13.5 15.5 0.4 118 chr3L 14852928 intron CG17839 + chr3L 14852987 intron CG17839 + chr3L 14853046 intron CG17839 + chr3L_7_14850001 chr3L_14850001 RAL-819 2166 chr3L 14852938 14852969 chr3L 14853033 14853078 19 102 7.0 11.5 9.2 1.9 140 chr3L 14852938 intron CG17839 + chr3L 14853008 intron CG17839 + chr3L 14853078 intron CG17839 + chr3L_19_14850001 chr3L_14850001 RAL-819 2167 chr3L 14902343 14902398 chr3L 14902445 14902491 38 98 12.5 5.5 9.0 3.8 148 chr3L 14902343 intergenic not near genes chr3L 14902417 intergenic not near genes chr3L 14902491 intergenic not near genes chr3L_38_14900001 chr3L_14900001 RAL-819 2168 chr3L 14906102 14906128 chr3L 14906211 14906238 9 106 44.0 19.5 31.8 0.3 136 chr3L 14906102 intron DCX-EMAP + chr3L 14906170 intron DCX-EMAP + chr3L 14906238 intron DCX-EMAP + chr3L_9_14905001 chr3L_14905001 RAL-819 2169 chr3L 14906129 14906159 chr3L 14906208 14906229 14 91 27.0 18.0 22.5 0.6 100 chr3L 14906129 intron DCX-EMAP + chr3L 14906179 intron DCX-EMAP + chr3L 14906229 intron DCX-EMAP + chr3L_14_14905001 chr3L_14905001 RAL-819 2170 chr3L 14933421 14933456 chr3L 14933528 14933563 21 107 10.0 13.0 11.5 1.7 142 chr3L 14933421 intron DCX-EMAP + chr3L 14933492 intron DCX-EMAP + chr3L 14933563 intron DCX-EMAP + chr3L_21_14930001 chr3L_14930001 RAL-819 2171 chr3L 14970742 14970764 chr3L 14971070 14971099 F-element 17 334 17.5 10.0 13.8 1.1 357 chr3L 14970742 intergenic Tom + chr3L 14970920 intergenic not near genes chr3L 14971099 intergenic not near genes chr3L_17_14970001 chr3L_14970001 RAL-819 2172 chr3L 15085027 15085073 chr3L 15086215 15086263 1360 20 1184 14.5 15.0 14.8 1.3 1236 chr3L 15085027 intron cp309 - chr3L 15085645 intron cp309 - chr3L 15086263 intron cp309 - chr3L_20_15085001 chr3L_15085001 RAL-819 2173 chr3L 15094958 15094964 chr3L 15095071 15095085 8 116 24.0 17.5 20.8 0.4 127 chr3L 15094958 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095022 intergenic Aats-gly +,cp309 -,CG6945 - chr3L 15095085 intergenic Aats-gly +,cp309 -,CG6945 - chr3L_8_15095001 chr3L_15095001 RAL-819 2174 chr3L 15146140 15146173 chr3L 15146241 15146287 13 107 0.0 13.5 6.8 1.7 147 chr3L 15146140 3` UTR Pex3 + chr3L 15146214 3` UTR Pex3 + chr3L 15146287 3` UTR Pex3 + chr3L_13_15145001 chr3L_15145001 RAL-819 2175 chr3L 15165001 15165043 chr3L 15165120 15165160 15 120 0.0 0.0 0.0 15.0 159 chr3L 15165001 intergenic not near genes chr3L 15165080 intergenic not near genes chr3L 15165160 intergenic not near genes chr3L_15_15165001 chr3L_15165001 RAL-819 2176 chr3L 15182205 15182250 chr3L 15182415 15182460 7 210 11.0 48.0 29.5 0.2 255 chr3L 15182205 intergenic not near genes chr3L 15182332 intergenic not near genes chr3L 15182460 intergenic not near genes chr3L_7_15180001 chr3L_15180001 RAL-819 2177 chr3L 15209048 15209095 chr3L 15209153 15209200 36 110 9.5 7.5 8.5 3.8 152 chr3L 15209048 intergenic CG6888 + chr3L 15209124 intergenic not near genes chr3L 15209200 intergenic not near genes chr3L_36_15205001 chr3L_15205001 RAL-819 2178 chr3L 15219718 15219775 chr3L 15219825 15219882 23 107 6.0 4.5 5.2 3.7 164 chr3L 15219718 intergenic not near genes chr3L 15219800 intergenic not near genes chr3L 15219882 intergenic not near genes chr3L_23_15215001 chr3L_15215001 RAL-819 2179 chr3L 15233527 15233579 chr3L 15233633 15233644 35 104 16.5 7.5 12.0 2.7 117 chr3L 15233527 intergenic not near genes chr3L 15233586 intergenic not near genes chr3L 15233644 intergenic not near genes chr3L_35_15230001 chr3L_15230001 RAL-819 2180 chr3L 15257407 15257449 chr3L 15257645 15257687 30 237 9.0 8.5 8.8 3.1 280 chr3L 15257407 intergenic not near genes chr3L 15257547 intergenic not near genes chr3L 15257687 intergenic not near genes chr3L_30_15255001 chr3L_15255001 RAL-819 2181 chr3L 15263710 15263757 chr3L 15264030 15264077 32 319 7.5 11.5 9.5 3.0 367 chr3L 15263710 intergenic not near genes chr3L 15263894 intergenic not near genes chr3L 15264077 intergenic not near genes chr3L_32_15260001 chr3L_15260001 RAL-819 2182 chr3L 15295743 15295799 chr3L 15298611 15298663 gypsy5 25 2867 10.5 12.5 11.5 2.0 2920 chr3L 15295743 intergenic not near genes chr3L 15297203 intergenic not near genes chr3L 15298663 intergenic Best4 + chr3L_25_15295001 chr3L_15295001 RAL-819 2183 chr3L 15384934 15384990 chr3L 15385087 15385112 39 145 7.5 9.0 8.2 4.2 178 chr3L 15384934 intergenic not near genes chr3L 15385023 intergenic not near genes chr3L 15385112 intergenic not near genes chr3L_39_15385001 chr3L_15385001 RAL-819 2184 chr3L 15386513 15386572 chr3L 15386957 15387016 43 443 6.5 7.5 7.0 5.4 503 chr3L 15386513 intergenic not near genes chr3L 15386764 intergenic not near genes chr3L 15387016 intergenic not near genes chr3L_43_15385001 chr3L_15385001 RAL-819 2185 chr3L 15392042 15392072 chr3L 15392212 15392242 33 170 17.0 10.0 13.5 2.3 200 chr3L 15392042 intergenic not near genes chr3L 15392142 intergenic not near genes chr3L 15392242 intergenic not near genes chr3L_33_15390001 chr3L_15390001 RAL-819 2186 chr3L 3873390 3873392 chr3L 15393133 15393135 4 11519743 35.5 43.0 39.2 0.1 11519745 chr3L 3873390 intergenic not near genes chr3L 9633262 exon fry - chr3L 15393135 intergenic not near genes chr3L_4_9630001 chr3L_9630001 RAL-819 2187 chr3L 15405994 15406054 chr3L 15406101 15406118 27 103 8.0 11.0 9.5 2.6 124 chr3L 15405994 intergenic not near genes chr3L 15406056 intergenic not near genes chr3L 15406118 intergenic not near genes chr3L_27_15405001 chr3L_15405001 RAL-819 2188 chr3L 15423739 15423784 chr3L 15426608 15426653 opus 30 2869 11.0 5.0 8.0 3.3 2914 chr3L 15423739 intergenic not near genes chr3L 15425196 intergenic not near genes chr3L 15426653 intergenic not near genes chr3L_30_15425001 chr3L_15425001 RAL-819 2189 chr3L 15444630 15444637 chr3L 15444748 15444751 5 117 26.0 14.5 20.2 0.2 121 chr3L 15444630 intergenic not near genes chr3L 15444690 intergenic not near genes chr3L 15444751 intergenic not near genes chr3L_5_15440001 chr3L_15440001 RAL-819 2190 chr3L 15444639 15444685 chr3L 15444744 15444784 30 112 7.5 11.5 9.5 2.9 145 chr3L 15444639 intergenic not near genes chr3L 15444712 intergenic not near genes chr3L 15444784 intergenic not near genes chr3L_30_15440001 chr3L_15440001 RAL-819 2191 chr3L 15466012 15466139 chr3L 15466119 15466260 26 111 0.0 0.0 0.0 26.0 248 chr3L 15466012 intergenic not near genes chr3L 15466136 intergenic not near genes chr3L 15466260 intergenic not near genes chr3L_26_15465001 chr3L_15465001 RAL-819 2192 chr3L 15466494 15466553 chr3L 15466603 15466661 31 107 7.0 9.0 8.0 3.4 167 chr3L 15466494 intergenic not near genes chr3L 15466578 intergenic not near genes chr3L 15466661 intergenic not near genes chr3L_31_15465001 chr3L_15465001 RAL-819 2193 chr3L 15474667 15474688 chr3L 15474831 15474852 12 163 4.5 9.5 7.0 1.5 185 chr3L 15474667 intergenic not near genes chr3L 15474760 intergenic not near genes chr3L 15474852 intergenic not near genes chr3L_12_15470001 chr3L_15470001 RAL-819 2194 chr3L 15493289 15493347 chr3L 15493409 15493467 13 116 8.5 0.0 4.2 2.5 178 chr3L 15493289 exon CG12355 - chr3L 15493378 intron CG12355 - chr3L 15493467 intron CG12355 - chr3L_13_15490001 chr3L_15490001 RAL-819 2195 chr3L 15541595 15541652 chr3L 15541711 15541768 25 116 10.0 7.5 8.8 2.6 173 chr3L 15541595 intron CrebA + chr3L 15541682 intron CrebA + chr3L 15541768 intron CrebA + chr3L_25_15540001 chr3L_15540001 RAL-819 2196 chr3L 15545987 15546033 chr3L 15546083 15546134 36 100 10.0 12.0 11.0 3.0 147 chr3L 15545987 intron CrebA + chr3L 15546060 intron CrebA + chr3L 15546134 intron CrebA + chr3L_36_15545001 chr3L_15545001 RAL-819 2197 chr3L 15554895 15554947 chr3L 15556707 15556752 S-element 42 1811 15.0 13.0 14.0 2.8 1857 chr3L 15554895 intron AGO2 + chr3L 15555824 intron AGO2 + chr3L 15556752 intron AGO2 + chr3L_42_15555001 chr3L_15555001 RAL-819 2198 chr3L 15594600 15594653 chr3L 15594698 15594741 36 99 13.0 10.5 11.8 2.8 141 chr3L 15594600 intron RhoGAP71E + chr3L 15594670 intron RhoGAP71E + chr3L 15594741 intron RhoGAP71E + chr3L_36_15590001 chr3L_15590001 RAL-819 2199 chr3L 15600143 15600196 chr3L 15600253 15600322 17 119 14.5 0.0 7.2 2.1 179 chr3L 15600143 intron RhoGAP71E + chr3L 15600232 intron RhoGAP71E + chr3L 15600322 intron RhoGAP71E + chr3L_17_15600001 chr3L_15600001 RAL-819 2200 chr3L 15614028 15614037 chr3L 15614133 15614142 11 105 6.0 8.0 7.0 1.4 114 chr3L 15614028 intron comm3 - chr3L 15614085 intron comm3 - chr3L 15614142 intron comm3 - chr3L_11_15610001 chr3L_15610001 RAL-819 2201 chr3L 15617769 15617772 chr3L 15617979 15617986 6 212 18.0 9.0 13.5 0.4 217 chr3L 15617769 intron comm3 - chr3L 15617878 intron comm3 - chr3L 15617986 intron comm3 - chr3L_6_15615001 chr3L_15615001 RAL-819 2202 chr3L 15617775 15617807 chr3L 15617978 15618020 12 208 5.0 8.5 6.8 1.5 245 chr3L 15617775 intron comm3 - chr3L 15617898 intron comm3 - chr3L 15618020 intron comm3 - chr3L_12_15615001 chr3L_15615001 RAL-819 2203 chr3L 15633156 15633216 chr3L 15633261 15633321 33 104 5.5 5.0 5.2 5.3 165 chr3L 15633156 intron comm3 - chr3L 15633238 intron comm3 - chr3L 15633321 intron comm3 - chr3L_33_15630001 chr3L_15630001 RAL-819 2204 chr3L 15637174 15637195 chr3L 15637274 15637280 22 97 15.5 30.0 22.8 0.9 106 chr3L 15637174 intron comm3 - chr3L 15637227 intron comm3 - chr3L 15637280 intron comm3 - chr3L_22_15635001 chr3L_15635001 RAL-819 2205 chr3L 15638003 15638023 chr3L 15638165 15638185 19 161 14.5 7.0 10.8 1.6 182 chr3L 15638003 intron comm3 - chr3L 15638094 intron comm3 - chr3L 15638185 intron comm3 - chr3L_19_15635001 chr3L_15635001 RAL-819 2206 chr3L 15744580 15744621 chr3L 15745029 15745070 29 454 88.5 85.5 87.0 0.3 490 chr3L 15744580 intergenic not near genes chr3L 15744825 intergenic not near genes chr3L 15745070 intergenic not near genes chr3L_29_15740001 chr3L_15740001 RAL-819 2207 chr3L 15756856 15756912 chr3L 15756964 15756992 16 105 8.5 0.5 4.5 2.9 136 chr3L 15756856 intergenic not near genes chr3L 15756924 intergenic not near genes chr3L 15756992 intergenic not near genes chr3L_16_15755001 chr3L_15755001 RAL-819 2208 chr3L 15774876 15774885 chr3L 15774991 15775000 6 115 6.0 12.0 9.0 0.6 124 chr3L 15774876 intergenic not near genes chr3L 15774938 intergenic not near genes chr3L 15775000 intergenic not near genes chr3L_6_15770001 chr3L_15770001 RAL-819 2209 chr3L 15778557 15778605 chr3L 15778664 15778673 45 106 12.5 10.0 11.2 3.7 116 chr3L 15778557 intergenic not near genes chr3L 15778615 intergenic not near genes chr3L 15778673 intergenic not near genes chr3L_45_15775001 chr3L_15775001 RAL-819 2210 chr3L 15781629 15781678 chr3L 15781785 15781837 7 159 0.0 0.0 0.0 7.0 208 chr3L 15781629 intergenic not near genes chr3L 15781733 intergenic not near genes chr3L 15781837 intergenic not near genes chr3L_7_15780001 chr3L_15780001 RAL-819 2211 chr3L 15846620 15846677 chr3L 15846735 15846792 66 114 7.5 15.5 11.5 5.3 172 chr3L 15846620 intergenic not near genes chr3L 15846706 intergenic not near genes chr3L 15846792 intergenic not near genes chr3L_66_15845001 chr3L_15845001 RAL-819 2212 chr3L 15871574 15871615 chr3L 15871677 15871724 31 108 9.0 15.5 12.2 2.3 150 chr3L 15871574 intron pHCl - chr3L 15871649 intron pHCl - chr3L 15871724 intron pHCl - chr3L_31_15870001 chr3L_15870001 RAL-819 2213 chr3L 15880570 15880590 chr3L 15880673 15880695 14 102 30.5 11.5 21.0 0.6 125 chr3L 15880570 intron pHCl - chr3L 15880632 intron pHCl - chr3L 15880695 intron pHCl - chr3L_14_15880001 chr3L_15880001 RAL-819 2214 chr3L 15880591 15880625 chr3L 15880672 15880730 38 99 12.0 11.5 11.8 3.0 139 chr3L 15880591 intron pHCl - chr3L 15880660 intron pHCl - chr3L 15880730 intron pHCl - chr3L_38_15880001 chr3L_15880001 RAL-819 2215 chr3L 15883170 15883180 chr3L 15883486 15883491 8 315 30.0 11.0 20.5 0.4 321 chr3L 15883170 intron pHCl - chr3L 15883330 intron pHCl - chr3L 15883491 intron pHCl - chr3L_8_15880001 chr3L_15880001 RAL-819 2216 chr3L 15883182 15883195 chr3L 15883485 15883513 12 304 22.0 10.0 16.0 0.7 331 chr3L 15883182 intron pHCl - chr3L 15883348 intron pHCl - chr3L 15883513 intron pHCl - chr3L_12_15880001 chr3L_15880001 RAL-819 2217 chr3L 15883196 15883225 chr3L 15883484 15883513 33 302 10.0 10.0 10.0 3.0 317 chr3L 15883196 intron pHCl - chr3L 15883354 intron pHCl - chr3L 15883513 intron pHCl - chr3L_33_15880001 chr3L_15880001 RAL-819 2218 chr3L 15899213 15899253 chr3L 15899794 15899845 jockey 41 581 10.0 17.0 13.5 2.8 632 chr3L 15899213 intergenic pHCl - chr3L 15899529 intergenic pHCl - chr3L 15899845 intergenic sff - chr3L_41_15895001 chr3L_15895001 RAL-819 2219 chr3L 15899254 15899262 chr3L 15899791 15899811 jockey 5 558 5.5 16.0 10.8 0.4 557 chr3L 15899254 intergenic pHCl - chr3L 15899532 intergenic not near genes chr3L 15899811 intergenic sff - chr3L_5_15895001 chr3L_15895001 RAL-819 2220 chr3L 15929175 15929225 chr3L 15938342 15938397 roo 6 9171 0.0 8.5 4.2 1.2 9222 chr3L 15929175 intron Pka-C3 - chr3L 15933786 intron Pka-C3 - chr3L 15938397 intron Pka-C3 - chr3L_6_15930001 chr3L_15930001 RAL-819 2221 chr3L 15989211 15989226 chr3L 15989319 15989334 15 107 11.0 11.0 11.0 1.2 123 chr3L 15989211 intron Hip14 + chr3L 15989272 intron Hip14 + chr3L 15989334 intron Hip14 + chr3L_15_15985001 chr3L_15985001 RAL-819 2222 chr3L 16060461 16060464 chr3L 16060620 16060628 4 163 37.5 15.5 26.5 0.1 167 chr3L 16060461 intron Mbs + chr3L 16060544 intron Mbs + chr3L 16060628 intron Mbs + chr3L_4_16060001 chr3L_16060001 RAL-819 2223 chr3L 16060465 16060491 chr3L 16060619 16060655 20 160 24.5 15.0 19.8 1.0 190 chr3L 16060465 intron Mbs + chr3L 16060560 intron Mbs + chr3L 16060655 intron Mbs + chr3L_20_16060001 chr3L_16060001 RAL-819 2224 chr3L 16060494 16060509 chr3L 16060618 16060673 13 156 13.5 15.0 14.2 0.9 179 chr3L 16060494 intron Mbs + chr3L 16060584 intron Mbs + chr3L 16060673 intron Mbs + chr3L_13_16060001 chr3L_16060001 RAL-819 2225 chr3L 16070716 16070761 chr3L 16070818 16070863 35 101 15.5 20.0 17.8 1.9 147 chr3L 16070716 intron Mbs + chr3L 16070790 intron Mbs + chr3L 16070863 exon Mbs + chr3L_35_16070001 chr3L_16070001 RAL-819 2226 chr3L 16162589 16162624 chr3L 16162690 16162733 26 107 10.5 16.0 13.2 1.8 144 chr3L 16162589 intron CG5151 - chr3L 16162661 intron CG5151 - chr3L 16162733 intron CG5151 - chr3L_26_16160001 chr3L_16160001 RAL-819 2227 chr3L 16179218 16179243 chr3L 16179325 16179350 17 106 8.5 13.0 10.8 1.4 132 chr3L 16179218 intergenic not near genes chr3L 16179284 intergenic not near genes chr3L 16179350 intergenic not near genes chr3L_17_16175001 chr3L_16175001 RAL-819 2228 chr3L 16184064 16184121 chr3L 16188933 16188990 X-element 42 4868 12.0 15.0 13.5 2.9 4926 chr3L 16184064 intergenic not near genes chr3L 16186527 intergenic not near genes chr3L 16188990 intergenic not near genes chr3L_42_16185001 chr3L_16185001 RAL-819 2229 chr3L 16221240 16221296 chr3L 16221356 16221396 40 115 10.5 10.0 10.2 3.6 156 chr3L 16221240 intergenic not near genes chr3L 16221318 intergenic not near genes chr3L 16221396 intergenic not near genes chr3L_40_16220001 chr3L_16220001 RAL-819 2230 chr3L 16260430 16260458 chr3L 16260538 16260566 6 108 0.0 14.5 7.2 0.7 136 chr3L 16260430 intergenic not near genes chr3L 16260498 intergenic not near genes chr3L 16260566 intergenic not near genes chr3L_6_16260001 chr3L_16260001 RAL-819 2231 chr3L 16304839 16304894 chr3L 16304942 16304997 37 101 14.5 18.0 16.2 2.2 158 chr3L 16304839 intergenic CG43249 +,CG13043 - chr3L 16304918 intergenic CG43249 +,CG13043 - chr3L 16304997 intergenic CG13043 -,CG43249 + chr3L_37_16300001 chr3L_16300001 RAL-819 2232 chr3L 16427070 16427073 chr3L 16427177 16427180 5 107 33.5 12.5 23.0 0.2 110 chr3L 16427070 intron,intron CG33158 +,dsx-c73A - chr3L 16427125 intron,intron CG33158 +,dsx-c73A - chr3L 16427180 intron,intron CG33158 +,dsx-c73A - chr3L_5_16425001 chr3L_16425001 RAL-819 2233 chr3L 16427074 16427124 chr3L 16427175 16427231 39 103 12.5 13.0 12.8 2.8 157 chr3L 16427074 intron,intron CG33158 +,dsx-c73A - chr3L 16427152 intron,intron CG33158 +,dsx-c73A - chr3L 16427231 intron,intron CG33158 +,dsx-c73A - chr3L_39_16425001 chr3L_16425001 RAL-819 2234 chr3L 16437044 16437101 chr3L 16437148 16437212 31 107 13.5 1.5 7.5 3.6 168 chr3L 16437044 intron,intron CG33158 +,dsx-c73A - chr3L 16437128 intron,intron CG33158 +,dsx-c73A - chr3L 16437212 intron,intron CG33158 +,dsx-c73A - chr3L_31_16435001 chr3L_16435001 RAL-819 2235 chr3L 16450015 16450053 chr3L 16450125 16450163 34 109 0.0 17.0 8.5 3.6 148 chr3L 16450015 intron,intron CG33158 +,dsx-c73A - chr3L 16450089 intron,intron CG33158 +,dsx-c73A - chr3L 16450163 intron,exon CG33158 +,dsx-c73A - chr3L_34_16450001 chr3L_16450001 RAL-819 2236 chr3L 16457503 16457555 chr3L 16457624 16457675 24 120 8.0 7.0 7.5 2.8 172 chr3L 16457503 intron CG33158 + chr3L 16457589 intron CG33158 + chr3L 16457675 intron CG33158 + chr3L_24_16455001 chr3L_16455001 RAL-819 2237 chr3L 16462706 16462739 chr3L 16462825 16462858 17 117 14.0 10.0 12.0 1.3 152 chr3L 16462706 intron CG33158 + chr3L 16462782 intron CG33158 + chr3L 16462858 intron CG33158 + chr3L_17_16460001 chr3L_16460001 RAL-819 2238 chr3L 16476771 16476776 chr3L 16476882 16476887 6 111 5.0 8.5 6.8 0.8 116 chr3L 16476771 intron,intron CG33158 +,aos - chr3L 16476829 intron,intron CG33158 +,aos - chr3L 16476887 intron,intron CG33158 +,aos - chr3L_6_16475001 chr3L_16475001 RAL-819 2239 chr3L 16493951 16494004 chr3L 16494493 16494546 jockey 49 539 19.0 17.0 18.0 2.6 595 chr3L 16493951 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494248 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494546 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_49_16490001 chr3L_16490001 RAL-819 2240 chr3L 16506210 16506267 chr3L 16506322 16506355 47 109 9.0 11.5 10.2 4.2 145 chr3L 16506210 intron CG43373 - chr3L 16506282 intron CG43373 - chr3L 16506355 intron CG43373 - chr3L_47_16505001 chr3L_16505001 RAL-819 2241 chr3L 16514542 16514597 chr3L 16514665 16514719 24 122 9.0 7.0 8.0 2.7 177 chr3L 16514542 intron CG43373 - chr3L 16514630 intron CG43373 - chr3L 16514719 intron CG43373 - chr3L_24_16510001 chr3L_16510001 RAL-819 2242 chr3L 16533540 16533586 chr3L 16533676 16533722 18 134 6.5 10.5 8.5 1.9 182 chr3L 16533540 intron CG43373 - chr3L 16533631 intron CG43373 - chr3L 16533722 intron CG43373 - chr3L_18_16530001 chr3L_16530001 RAL-819 2243 chr3L 16537822 16537880 chr3L 16537932 16537992 43 110 0.0 8.5 4.2 8.3 170 chr3L 16537822 intron CG43373 - chr3L 16537907 intron CG43373 - chr3L 16537992 intron CG43373 - chr3L_43_16535001 chr3L_16535001 RAL-819 2244 chr3L 16540029 16540085 chr3L 16540142 16540198 35 111 7.5 8.5 8.0 3.9 169 chr3L 16540029 intron CG43373 - chr3L 16540114 intron CG43373 - chr3L 16540198 intron CG43373 - chr3L_35_16540001 chr3L_16540001 RAL-819 2245 chr3L 16563409 16563465 chr3L 16564827 16564883 53 1419 94.5 112.5 103.5 0.5 1474 chr3L 16563409 intergenic Mipp1 - chr3L 16564146 exon Mipp1 - chr3L 16564883 exon Mipp1 - chr3L_53_16560001 chr3L_16560001 RAL-819 2246 chr3L 16616487 16616510 chr3L 16621839 16621857 297 18 5351 20.5 9.5 15.0 1.1 5370 chr3L 16616487 3` UTR Abl - chr3L 16619172 3` UTR Abl - chr3L 16621857 3` UTR Abl - chr3L_18_16615001 chr3L_16615001 RAL-819 2247 chr3L 16616512 16616543 chr3L 16621836 16621891 297 25 5347 10.5 9.0 9.8 2.3 5379 chr3L 16616512 3` UTR Abl - chr3L 16619202 3` UTR Abl - chr3L 16621891 3` UTR Abl - chr3L_25_16615001 chr3L_16615001 RAL-819 2248 chr3L 16635730 16635788 chr3L 16635843 16635893 42 108 17.0 11.0 14.0 2.8 163 chr3L 16635730 intron Abl - chr3L 16635812 intron Abl - chr3L 16635893 intron Abl - chr3L_42_16635001 chr3L_16635001 RAL-819 2249 chr3L 16681834 16681880 chr3L 16681950 16681996 41 114 18.5 8.0 13.2 2.9 162 chr3L 16681834 intron,intron Lasp -,CG43954 - chr3L 16681915 intron,intron Lasp -,CG43954 - chr3L 16681996 intron,intron Lasp -,CG43954 - chr3L_41_16680001 chr3L_16680001 RAL-819 2250 chr3L 16684004 16684044 chr3L 16689250 16689290 copia 19 5245 11.0 13.0 12.0 1.5 5286 chr3L 16684004 intron,intron Lasp -,CG43954 - chr3L 16686647 intron,intron Lasp -,CG43954 - chr3L 16689290 intron,intron,5` UTR Lasp -,CG43954 -,CR45179 + chr3L_19_16685001 chr3L_16685001 RAL-819 2251 chr3L 16704121 16704150 chr3L 16704235 16704264 22 114 21.0 9.0 15.0 1.4 143 chr3L 16704121 intron,intron Lasp -,CG43954 - chr3L 16704192 intron,intron Lasp -,CG43954 - chr3L 16704264 intron,intron Lasp -,CG43954 - chr3L_22_16700001 chr3L_16700001 RAL-819 2252 chr3L 16704156 16704181 chr3L 16704234 16704295 19 111 9.0 8.5 8.8 1.9 139 chr3L 16704156 intron,intron Lasp -,CG43954 - chr3L 16704226 intron,intron Lasp -,CG43954 - chr3L 16704295 intron,intron Lasp -,CG43954 - chr3L_19_16700001 chr3L_16700001 RAL-819 2253 chr3L 16714818 16714873 chr3L 16714927 16714982 40 108 7.0 9.0 8.0 4.4 164 chr3L 16714818 intron Dab + chr3L 16714900 intron Dab + chr3L 16714982 intron Dab + chr3L_40_16710001 chr3L_16710001 RAL-819 2254 chr3L 16757621 16757669 chr3L 16757736 16757784 32 115 8.0 12.5 10.2 2.9 163 chr3L 16757621 intergenic not near genes chr3L 16757702 intergenic not near genes chr3L 16757784 intergenic not near genes chr3L_32_16755001 chr3L_16755001 RAL-819 2255 chr3L 16772472 16772513 chr3L 16772584 16772628 46 112 19.5 11.5 15.5 2.8 156 chr3L 16772472 intron Nrt + chr3L 16772550 intron Nrt + chr3L 16772628 intron Nrt + chr3L_46_16770001 chr3L_16770001 RAL-819 2256 chr3L 16808017 16808074 chr3L 16808118 16808178 36 101 7.0 1.0 4.0 7.2 161 chr3L 16808017 intron nudC + chr3L 16808098 intron nudC + chr3L 16808178 intron nudC + chr3L_36_16805001 chr3L_16805001 RAL-819 2257 chr3L 16817849 16817901 chr3L 16818014 16818066 54 161 9.0 15.5 12.2 4.1 217 chr3L 16817849 intron,intron nudC +,CG13024 - chr3L 16817958 intron,intron nudC +,CG13024 - chr3L 16818066 intron,intron nudC +,CG13024 - chr3L_54_16815001 chr3L_16815001 RAL-819 2258 chr3L 16844996 16845045 chr3L 16845134 16845183 30 135 14.0 17.5 15.8 1.8 187 chr3L 16844996 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845183 intergenic CG9669 -,CG9715 + chr3L_30_16845001 chr3L_16845001 RAL-819 2259 chr3L 16866185 16866226 chr3L 16866301 16866317 23 114 11.5 1.5 6.5 3.1 132 chr3L 16866185 intron Lmpt + chr3L 16866251 intron Lmpt + chr3L 16866317 intron Lmpt + chr3L_23_16865001 chr3L_16865001 RAL-819 2260 chr3L 16866230 16866243 chr3L 16866345 16866358 11 115 5.0 15.5 10.2 1.0 128 chr3L 16866230 intron Lmpt + chr3L 16866294 intron Lmpt + chr3L 16866358 intron Lmpt + chr3L_11_16865001 chr3L_16865001 RAL-819 2261 chr3L 16873317 16873360 chr3L 16873447 16873490 31 129 15.0 14.5 14.8 2.0 173 chr3L 16873317 intron Lmpt + chr3L 16873404 intron Lmpt + chr3L 16873490 intron Lmpt + chr3L_31_16870001 chr3L_16870001 RAL-819 2262 chr3L 16875354 16875391 chr3L 16875525 16875562 7 171 0.0 14.5 7.2 0.9 208 chr3L 16875354 intron Lmpt + chr3L 16875458 intron Lmpt + chr3L 16875562 intron Lmpt + chr3L_7_16875001 chr3L_16875001 RAL-819 2263 chr3L 16941375 16941416 chr3L 16941501 16941542 29 125 20.5 0.0 10.2 2.6 167 chr3L 16941375 intron Cpr73D - chr3L 16941458 intron Cpr73D - chr3L 16941542 intron Cpr73D - chr3L_29_16940001 chr3L_16940001 RAL-819 2264 chr3L 16945712 16945761 chr3L 16954879 16954893 roo 48 9162 18.5 10.0 14.2 3.2 9181 chr3L 16945712 exon Obp73a + chr3L 16950302 intergenic not near genes chr3L 16954893 5` UTR Nc73EF + chr3L_48_16950001 chr3L_16950001 RAL-819 2265 chr3L 17008423 17008425 chr3L 17008529 17008532 4 107 6.0 18.5 12.2 0.3 109 chr3L 17008423 intron CG3764 - chr3L 17008478 intron CG3764 - chr3L 17008532 intron CG3764 - chr3L_4_17005001 chr3L_17005001 RAL-819 2266 chr3L 17008426 17008433 chr3L 17008528 17008539 10 106 6.0 18.5 12.2 0.8 113 chr3L 17008426 intron CG3764 - chr3L 17008482 intron CG3764 - chr3L 17008539 intron CG3764 - chr3L_10_17005001 chr3L_17005001 RAL-819 2267 chr3L 17008437 17008477 chr3L 17008523 17008524 25 97 9.0 16.0 12.5 1.9 87 chr3L 17008437 intron CG3764 - chr3L 17008480 intron CG3764 - chr3L 17008524 intron CG3764 - chr3L_25_17005001 chr3L_17005001 RAL-819 2268 chr3L 17034916 17034965 chr3L 17035129 17035178 G2 41 213 8.0 14.0 11.0 3.4 262 chr3L 17034916 intergenic not near genes chr3L 17035047 intergenic not near genes chr3L 17035178 intergenic beg + chr3L_41_17035001 chr3L_17035001 RAL-819 2269 chr3L 17084983 17084991 chr3L 17094157 17094165 roo 6 9174 44.5 16.5 30.5 0.2 9182 chr3L 17084983 intron Rbp6 - chr3L 17089574 intron Rbp6 - chr3L 17094165 intron Rbp6 - chr3L_6_17085001 chr3L_17085001 RAL-819 2270 chr3L 17084993 17085036 chr3L 17094153 17094199 roo 35 9172 21.5 14.0 17.8 1.9 9206 chr3L 17084993 intron Rbp6 - chr3L 17089596 intron Rbp6 - chr3L 17094199 intron Rbp6 - chr3L_35_17085001 chr3L_17085001 RAL-819 2271 chr3L 17096481 17096498 chr3L 17096587 17096603 18 107 29.0 10.5 19.8 0.9 122 chr3L 17096481 intron Rbp6 - chr3L 17096542 intron Rbp6 - chr3L 17096603 intron Rbp6 - chr3L_18_17095001 chr3L_17095001 RAL-819 2272 chr3L 17096883 17096943 chr3L 17097002 17097055 18 111 10.5 0.5 5.5 2.8 172 chr3L 17096883 intron Rbp6 - chr3L 17096969 intron Rbp6 - chr3L 17097055 intron Rbp6 - chr3L_18_17095001 chr3L_17095001 RAL-819 2273 chr3L 17098161 17098165 chr3L 17098397 17098398 4 235 32.0 18.0 25.0 0.2 237 chr3L 17098161 intron Rbp6 - chr3L 17098280 intron Rbp6 - chr3L 17098398 intron Rbp6 - chr3L_4_17095001 chr3L_17095001 RAL-819 2274 chr3L 17098166 17098196 chr3L 17098395 17098432 24 231 18.0 17.5 17.8 1.3 266 chr3L 17098166 intron Rbp6 - chr3L 17098299 intron Rbp6 - chr3L 17098432 intron Rbp6 - chr3L_24_17095001 chr3L_17095001 RAL-819 2275 chr3L 17098199 17098206 chr3L 17098393 17098431 5 215 13.0 17.0 15.0 0.3 232 chr3L 17098199 intron Rbp6 - chr3L 17098315 intron Rbp6 - chr3L 17098431 intron Rbp6 - chr3L_5_17095001 chr3L_17095001 RAL-819 2276 chr3L 17120627 17120683 chr3L 17120728 17120784 50 99 12.0 9.5 10.8 4.2 157 chr3L 17120627 intron Rbp6 - chr3L 17120706 intron Rbp6 - chr3L 17120784 intron Rbp6 - chr3L_50_17120001 chr3L_17120001 RAL-819 2277 chr3L 17122330 17122340 chr3L 17123568 17123578 4 1238 67.5 62.0 64.8 0.1 1248 chr3L 17122330 intron Rbp6 - chr3L 17122954 intron Rbp6 - chr3L 17123578 intron Rbp6 - chr3L_4_17120001 chr3L_17120001 RAL-819 2278 chr3L 17122322 17122331 chr3L 17123581 17123609 5 1261 64.5 60.5 62.5 0.1 1287 chr3L 17122322 intron Rbp6 - chr3L 17122966 intron Rbp6 - chr3L 17123609 intron Rbp6 - chr3L_5_17120001 chr3L_17120001 RAL-819 2279 chr3L 17149141 17149160 chr3L 17149247 17149266 18 106 30.0 0.0 15.0 1.1 125 chr3L 17149141 intron Rbp6 - chr3L 17149204 intron Rbp6 - chr3L 17149266 intron Rbp6 - chr3L_18_17145001 chr3L_17145001 RAL-819 2280 chr3L 17217226 17217282 chr3L 17217331 17217387 31 103 10.0 9.0 9.5 3.0 161 chr3L 17217226 intron Rbp6 - chr3L 17217306 intron Rbp6 - chr3L 17217387 intron Rbp6 - chr3L_31_17215001 chr3L_17215001 RAL-819 2281 chr3L 17250450 17250466 chr3L 17250553 17250569 12 101 17.5 27.0 22.2 0.5 119 chr3L 17250450 intron CR43870 + chr3L 17250510 intron CR43870 + chr3L 17250569 intron CR43870 + chr3L_12_17250001 chr3L_17250001 RAL-819 2282 chr3L 17292259 17292297 chr3L 17292370 17292399 36 107 19.0 11.5 15.2 2.2 140 chr3L 17292259 intergenic not near genes chr3L 17292329 intergenic not near genes chr3L 17292399 intergenic not near genes chr3L_36_17290001 chr3L_17290001 RAL-819 2283 chr3L 17292298 17292306 chr3L 17292366 17292415 12 103 15.0 11.5 13.2 0.8 117 chr3L 17292298 intergenic not near genes chr3L 17292356 intergenic not near genes chr3L 17292415 intergenic not near genes chr3L_12_17290001 chr3L_17290001 RAL-819 2284 chr3L 17367411 17367460 chr3L 17367530 17367579 35 117 10.0 11.5 10.8 3.0 168 chr3L 17367411 intergenic CR45688 +,Cad74A - chr3L 17367495 intergenic CR45688 +,Cad74A - chr3L 17367579 intergenic Cad74A -,CR45688 + chr3L_35_17365001 chr3L_17365001 RAL-819 2285 chr3L 17408890 17408925 chr3L 17408991 17409026 19 100 16.0 8.5 12.2 1.4 136 chr3L 17408890 intron blot - chr3L 17408958 intron blot - chr3L 17409026 intron blot - chr3L_19_17405001 chr3L_17405001 RAL-819 2286 chr3L 17461994 17461997 chr3L 17462164 17462167 4 170 10.0 13.0 11.5 0.3 173 chr3L 17461994 intergenic not near genes chr3L 17462080 intergenic not near genes chr3L 17462167 intergenic not near genes chr3L_4_17460001 chr3L_17460001 RAL-819 2287 chr3L 17510720 17510728 chr3L 17510829 17510837 6 109 33.5 18.0 25.8 0.2 117 chr3L 17510720 exon Oatp74D + chr3L 17510778 intron Oatp74D + chr3L 17510837 intron Oatp74D + chr3L_6_17510001 chr3L_17510001 RAL-819 2288 chr3L 17510730 17510766 chr3L 17510828 17510875 37 107 14.5 17.5 16.0 2.2 145 chr3L 17510730 exon Oatp74D + chr3L 17510802 intron Oatp74D + chr3L 17510875 intron Oatp74D + chr3L_37_17510001 chr3L_17510001 RAL-819 2289 chr3L 17516955 17517010 chr3L 17524538 17524567 412 32 7578 15.0 17.5 16.2 1.9 7612 chr3L 17516955 intron CG7564 + chr3L 17520761 intron CG7564 + chr3L 17524567 3` UTR CG7564 + chr3L_32_17520001 chr3L_17520001 RAL-819 2290 chr3L 17578516 17578570 chr3L 17578642 17578697 13 122 17.0 0.5 8.8 1.3 181 chr3L 17578516 intron Eip74EF - chr3L 17578606 intron Eip74EF - chr3L 17578697 intron Eip74EF - chr3L_13_17575001 chr3L_17575001 RAL-819 2291 chr3L 17583532 17583534 chr3L 17583647 17583653 4 118 5.5 30.5 18.0 0.2 121 chr3L 17583532 intron Eip74EF - chr3L 17583592 intron Eip74EF - chr3L 17583653 intron Eip74EF - chr3L_4_17580001 chr3L_17580001 RAL-819 2292 chr3L 17583535 17583542 chr3L 17583611 17583661 5 110 3.5 14.0 8.8 0.5 126 chr3L 17583535 intron Eip74EF - chr3L 17583598 intron Eip74EF - chr3L 17583661 intron Eip74EF - chr3L_5_17580001 chr3L_17580001 RAL-819 2293 chr3L 17586940 17587002 chr3L 17587099 17587161 49 158 9.5 11.5 10.5 4.3 221 chr3L 17586940 intron Eip74EF - chr3L 17587050 intron Eip74EF - chr3L 17587161 intron Eip74EF - chr3L_49_17585001 chr3L_17585001 RAL-819 2294 chr3L 17592763 17592819 chr3L 17592879 17592935 72 115 11.5 8.5 10.0 6.5 172 chr3L 17592763 intron Eip74EF - chr3L 17592849 intron Eip74EF - chr3L 17592935 intron Eip74EF - chr3L_72_17590001 chr3L_17590001 RAL-819 2295 chr3L 17594216 17594274 chr3L 17594322 17594334 47 104 8.5 11.5 10.0 4.3 118 chr3L 17594216 intron Eip74EF - chr3L 17594275 intron Eip74EF - chr3L 17594334 intron Eip74EF - chr3L_47_17590001 chr3L_17590001 RAL-819 2296 chr3L 17707703 17707761 chr3L 17707877 17707935 34 170 11.0 10.0 10.5 3.0 232 chr3L 17707703 intron Ccn + chr3L 17707819 intron Ccn + chr3L 17707935 intron Ccn + chr3L_34_17705001 chr3L_17705001 RAL-819 2297 chr3L 17711484 17711521 chr3L 17711599 17711635 32 114 7.0 8.0 7.5 3.8 151 chr3L 17711484 intron Ccn + chr3L 17711560 intron Ccn + chr3L 17711635 intron Ccn + chr3L_32_17710001 chr3L_17710001 RAL-819 2298 chr3L 17715000 17715002 chr3L 22733618 22733620 4 5018618 26.5 46.5 36.5 0.1 5018620 chr3L 17715000 intron Ccn + chr3L 20224310 exon CG17147 + chr3L 22733620 intron CG11241 - chr3L_4_20220001 chr3L_20220001 RAL-819 2299 chr3L 17730821 17730880 chr3L 17738184 17738243 mdg1 46 7362 13.5 11.0 12.2 3.5 7422 chr3L 17730821 intron Ccn + chr3L 17734532 intron Ccn + chr3L 17738243 intron Ccn + chr3L_46_17730001 chr3L_17730001 RAL-819 2300 chr3L 17739188 17739229 chr3L 17739461 17739502 24 272 13.0 10.0 11.5 1.9 314 chr3L 17739188 intron Ccn + chr3L 17739345 intron Ccn + chr3L 17739502 intron Ccn + chr3L_24_17735001 chr3L_17735001 RAL-819 2301 chr3L 17757799 17757843 chr3L 17757924 17757968 50 122 8.0 17.0 12.5 3.7 169 chr3L 17757799 intron,intron Adgf-A -,Msi - chr3L 17757884 intron,intron Adgf-A -,Msi - chr3L 17757968 intron,intron Adgf-A -,Msi - chr3L_50_17755001 chr3L_17755001 RAL-819 2302 chr3L 17773188 17773194 chr3L 17773310 17773316 7 122 26.0 11.5 18.8 0.4 128 chr3L 17773188 intergenic not near genes chr3L 17773252 intergenic not near genes chr3L 17773316 intergenic not near genes chr3L_7_17770001 chr3L_17770001 RAL-819 2303 chr3L 17773195 17773240 chr3L 17773308 17773357 39 120 10.0 11.5 10.8 3.3 162 chr3L 17773195 intergenic not near genes chr3L 17773276 intergenic not near genes chr3L 17773357 intergenic not near genes chr3L_39_17770001 chr3L_17770001 RAL-819 2304 chr3L 17778015 17778054 chr3L 17778170 17778209 29 155 11.5 17.5 14.5 1.9 194 chr3L 17778015 intergenic not near genes chr3L 17778112 intergenic not near genes chr3L 17778209 intergenic not near genes chr3L_29_17775001 chr3L_17775001 RAL-819 2305 chr3L 17782328 17782375 chr3L 17782629 17782676 37 300 13.5 12.0 12.8 2.7 348 chr3L 17782328 intergenic not near genes chr3L 17782502 intergenic not near genes chr3L 17782676 intergenic not near genes chr3L_37_17780001 chr3L_17780001 RAL-819 2306 chr3L 17789821 17789876 chr3L 17789922 17789977 46 101 9.5 12.0 10.8 3.9 156 chr3L 17789821 intergenic not near genes chr3L 17789899 intergenic not near genes chr3L 17789977 intergenic not near genes chr3L_46_17785001 chr3L_17785001 RAL-819 2307 chr3L 17790167 17790230 chr3L 17790305 17790372 38 139 10.5 10.0 10.2 3.4 205 chr3L 17790167 intergenic not near genes chr3L 17790270 intergenic not near genes chr3L 17790372 intergenic not near genes chr3L_38_17790001 chr3L_17790001 RAL-819 2308 chr3L 17790578 17790636 chr3L 17790868 17790926 29 289 9.5 9.5 9.5 2.8 348 chr3L 17790578 intergenic CG42815 - chr3L 17790752 intergenic CG42815 - chr3L 17790926 intergenic CG42815 - chr3L_29_17790001 chr3L_17790001 RAL-819 2309 chr3L 17799541 17799586 chr3L 17799647 17799692 40 106 11.5 11.5 11.5 3.2 151 chr3L 17799541 exon NUCB1 - chr3L 17799616 intron NUCB1 - chr3L 17799692 intron NUCB1 - chr3L_40_17795001 chr3L_17795001 RAL-819 2310 chr3L 17799791 17799842 chr3L 17801598 17801654 S-element 36 1811 7.5 11.0 9.2 3.5 1863 chr3L 17799791 intron NUCB1 - chr3L 17800722 intron NUCB1 - chr3L 17801654 intron NUCB1 - chr3L_36_17800001 chr3L_17800001 RAL-819 2311 chr3L 17827267 17827271 chr3L 17827383 17827387 5 116 27.5 15.5 21.5 0.2 120 chr3L 17827267 intron Grd + chr3L 17827327 intron Grd + chr3L 17827387 intron Grd + chr3L_5_17825001 chr3L_17825001 RAL-819 2312 chr3L 17827275 17827316 chr3L 17827380 17827432 26 112 9.0 13.0 11.0 2.2 157 chr3L 17827275 intron Grd + chr3L 17827354 intron Grd + chr3L 17827432 intron Grd + chr3L_26_17825001 chr3L_17825001 RAL-819 2313 chr3L 17884667 17884711 chr3L 17884792 17884836 44 124 13.5 13.5 13.5 3.0 169 chr3L 17884667 intergenic CG5506 - chr3L 17884752 intergenic CG5506 - chr3L 17884836 intergenic CG5506 - chr3L_44_17880001 chr3L_17880001 RAL-819 2314 chr3L 17881495 17881509 chr3L 17888046 17888050 4 6544 74.0 27.0 50.5 0.1 6555 chr3L 17881495 intron CG7408 + chr3L 17884772 intergenic CG5506 - chr3L 17888050 intron CG7402 + chr3L_4_17880001 chr3L_17880001 RAL-819 2315 chr3L 17906555 17906607 chr3L 17906681 17906733 34 124 10.5 12.0 11.2 2.8 178 chr3L 17906555 intron Prestin - chr3L 17906644 intron Prestin - chr3L 17906733 intron Prestin - chr3L_34_17905001 chr3L_17905001 RAL-819 2316 chr3L 17917597 17917637 chr3L 17917912 17917952 10 314 0.0 9.5 4.8 1.7 355 chr3L 17917597 intergenic not near genes chr3L 17917774 intergenic not near genes chr3L 17917952 intergenic not near genes chr3L_10_17915001 chr3L_17915001 RAL-819 2317 chr3L 17918352 17918401 chr3L 17921175 17921229 opus 18 2826 9.0 13.0 11.0 1.5 2877 chr3L 17918352 intergenic not near genes chr3L 17919790 intergenic not near genes chr3L 17921229 intergenic not near genes chr3L_18_17915001 chr3L_17915001 RAL-819 2318 chr3L 17981235 17981241 chr3L 18667613 18667613 5 686377 8.0 41.0 24.5 0.2 686378 chr3L 17981235 intron Eip75B - chr3L 18324424 intergenic not near genes chr3L 18667613 intron CG42495 + chr3L_5_18320001 chr3L_18320001 RAL-819 2319 chr3L 17999747 17999800 chr3L 17999851 17999855 27 100 6.5 10.0 8.2 2.9 108 chr3L 17999747 intron Eip75B - chr3L 17999801 intron Eip75B - chr3L 17999855 intron Eip75B - chr3L_27_17995001 chr3L_17995001 RAL-819 2320 chr3L 18011434 18011493 chr3L 18011541 18011598 29 105 11.0 10.5 10.8 2.5 164 chr3L 18011434 intron Eip75B - chr3L 18011516 intron Eip75B - chr3L 18011598 intron Eip75B - chr3L_29_18010001 chr3L_18010001 RAL-819 2321 chr3L 18018184 18018240 chr3L 18018284 18018346 39 104 7.5 10.0 8.8 4.0 162 chr3L 18018184 intron Eip75B - chr3L 18018265 intron Eip75B - chr3L 18018346 intron Eip75B - chr3L_39_18015001 chr3L_18015001 RAL-819 2322 chr3L 18020538 18020589 chr3L 18020669 18020720 32 130 7.0 6.0 6.5 4.3 182 chr3L 18020538 intron Eip75B - chr3L 18020629 intron Eip75B - chr3L 18020720 intron Eip75B - chr3L_32_18020001 chr3L_18020001 RAL-819 2323 chr3L 18027061 18027069 chr3L 18027170 18027178 9 108 0.0 15.5 7.8 1.0 117 chr3L 18027061 intron Eip75B - chr3L 18027120 intron Eip75B - chr3L 18027178 intron Eip75B - chr3L_9_18025001 chr3L_18025001 RAL-819 2324 chr3L 18047680 18047736 chr3L 18056762 18056802 roo 39 9081 13.0 12.5 12.8 2.8 9122 chr3L 18047680 intron Eip75B - chr3L 18052241 intron Eip75B - chr3L 18056802 intron Eip75B - chr3L_39_18050001 chr3L_18050001 RAL-819 2325 chr3L 18075221 18075254 chr3L 18075511 18075544 13 290 14.5 10.0 12.2 1.0 323 chr3L 18075221 intergenic not near genes chr3L 18075382 intergenic not near genes chr3L 18075544 intergenic not near genes chr3L_13_18075001 chr3L_18075001 RAL-819 2326 chr3L 18106231 18106238 chr3L 18106375 18106382 5 144 30.0 0.0 15.0 0.3 151 chr3L 18106231 intergenic CG13698 -,mRpS26 + chr3L 18106306 intergenic CG13698 -,mRpS26 + chr3L 18106382 intergenic mRpS26 +,CG13698 - chr3L_5_18105001 chr3L_18105001 RAL-819 2327 chr3L 18106239 18106278 chr3L 18106370 18106382 19 141 12.0 0.0 6.0 2.7 143 chr3L 18106239 intergenic CG13698 -,mRpS26 + chr3L 18106310 intergenic CG13698 -,mRpS26 + chr3L 18106382 intergenic mRpS26 +,CG13698 - chr3L_19_18105001 chr3L_18105001 RAL-819 2328 chr3L 18107591 18107645 chr3L 18107709 18107763 44 117 10.0 12.0 11.0 3.7 172 chr3L 18107591 intergenic mRpS26 +,CG5147 - chr3L 18107677 intergenic CG5147 -,mRpS26 + chr3L 18107763 intergenic CG5147 -,mRpS26 + chr3L_44_18105001 chr3L_18105001 RAL-819 2329 chr3L 18124399 18124430 chr3L 18124508 18124539 23 108 16.5 12.0 14.2 1.5 140 chr3L 18124399 intergenic not near genes chr3L 18124469 intergenic not near genes chr3L 18124539 intergenic not near genes chr3L_23_18120001 chr3L_18120001 RAL-819 2330 chr3L 18135736 18135757 chr3L 18135840 18135862 13 105 4.5 14.5 9.5 1.2 126 chr3L 18135736 intergenic CR44669 - chr3L 18135799 3` UTR CR44669 - chr3L 18135862 3` UTR CR44669 - chr3L_13_18135001 chr3L_18135001 RAL-819 2331 chr3L 18150375 18150383 chr3L 18150501 18150509 9 126 27.0 0.0 13.5 0.6 134 chr3L 18150375 intron CG7330 + chr3L 18150442 intron CG7330 + chr3L 18150509 intron CG7330 + chr3L_9_18150001 chr3L_18150001 RAL-819 2332 chr3L 18150385 18150432 chr3L 18150500 18150571 21 129 7.0 0.0 3.5 4.7 186 chr3L 18150385 intron CG7330 + chr3L 18150478 intron CG7330 + chr3L 18150571 intron CG7330 + chr3L_21_18150001 chr3L_18150001 RAL-819 2333 chr3L 18160653 18160666 chr3L 18160760 18160771 8 105 18.5 11.5 15.0 0.5 118 chr3L 18160653 intron CG13699 - chr3L 18160712 intron CG13699 - chr3L 18160771 intron CG13699 - chr3L_8_18160001 chr3L_18160001 RAL-819 2334 chr3L 18163957 18164241 chr3L 18164184 18164433 36 208 0.5 0.5 0.5 24.0 476 chr3L 18163957 intergenic not near genes chr3L 18164195 intergenic not near genes chr3L 18164433 intergenic not near genes chr3L_36_18160001 chr3L_18160001 RAL-819 2335 chr3L 18172666 18172701 chr3L 18172767 18172802 23 100 18.0 7.0 12.5 1.7 136 chr3L 18172666 intron W - chr3L 18172734 intron W - chr3L 18172802 intron W - chr3L_23_18170001 chr3L_18170001 RAL-819 2336 chr3L 18180933 18180982 chr3L 18181041 18181094 6 109 9.0 8.0 8.5 0.6 161 chr3L 18180933 intron W - chr3L 18181014 intron W - chr3L 18181094 intron W - chr3L_6_18180001 chr3L_18180001 RAL-819 2337 chr3L 18186605 18186619 chr3L 18186769 18186783 9 164 28.5 13.5 21.0 0.4 178 chr3L 18186605 intergenic not near genes chr3L 18186694 intergenic not near genes chr3L 18186783 intergenic not near genes chr3L_9_18185001 chr3L_18185001 RAL-819 2338 chr3L 18197862 18197879 chr3L 18197983 18197994 9 120 0.0 16.0 8.0 1.0 132 chr3L 18197862 intergenic not near genes chr3L 18197928 intergenic not near genes chr3L 18197994 intergenic not near genes chr3L_9_18195001 chr3L_18195001 RAL-819 2339 chr3L 18198929 18198931 chr3L 24821492 24821494 20 6622563 46.0 39.0 42.5 0.5 6622565 chr3L 18198929 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821494 intergenic not near genes chr3L_20_21510001 chr3L_21510001 RAL-819 2340 chr3L 18203574 18203629 chr3L 18203694 18203737 16 112 10.5 0.0 5.2 2.6 163 chr3L 18203574 3` UTR CG7320 + chr3L 18203656 intergenic CG7320 + chr3L 18203737 intergenic CG7320 + chr3L_16_18200001 chr3L_18200001 RAL-819 2341 chr3L 18207888 18207905 chr3L 18207998 18208014 10 110 7.5 0.0 3.8 2.1 126 chr3L 18207888 intergenic not near genes chr3L 18207951 intergenic not near genes chr3L 18208014 intergenic not near genes chr3L_10_18205001 chr3L_18205001 RAL-819 2342 chr3L 18210719 18210750 chr3L 18210820 18210855 16 107 9.5 0.5 5.0 2.7 136 chr3L 18210719 intergenic not near genes chr3L 18210787 intergenic not near genes chr3L 18210855 intergenic not near genes chr3L_16_18210001 chr3L_18210001 RAL-819 2343 chr3L 18223139 18223189 chr3L 18223247 18223309 26 109 8.0 0.0 4.0 5.2 170 chr3L 18223139 intergenic not near genes chr3L 18223224 intergenic not near genes chr3L 18223309 intergenic not near genes chr3L_26_18220001 chr3L_18220001 RAL-819 2344 chr3L 18258838 18258867 chr3L 18258984 18259018 16 151 12.0 6.5 9.2 1.6 180 chr3L 18258838 intergenic not near genes chr3L 18258928 intergenic not near genes chr3L 18259018 intergenic not near genes chr3L_16_18255001 chr3L_18255001 RAL-819 2345 chr3L 18258870 18258883 chr3L 18258981 18259034 7 144 7.0 3.5 5.2 1.1 164 chr3L 18258870 intergenic not near genes chr3L 18258952 intergenic not near genes chr3L 18259034 intergenic not near genes chr3L_7_18255001 chr3L_18255001 RAL-819 2346 chr3L 18262447 18262488 chr3L 18262555 18262596 25 108 11.0 10.0 10.5 2.2 149 chr3L 18262447 intergenic not near genes chr3L 18262522 intergenic not near genes chr3L 18262596 intergenic not near genes chr3L_25_18260001 chr3L_18260001 RAL-819 2347 chr3L 18273846 18273851 chr3L 18273957 18273962 5 110 0.0 24.5 12.2 0.4 116 chr3L 18273846 intergenic not near genes chr3L 18273904 intergenic not near genes chr3L 18273962 intergenic not near genes chr3L_5_18270001 chr3L_18270001 RAL-819 2348 chr3L 18301329 18301380 chr3L 18301440 18301494 32 113 0.5 7.5 4.0 6.4 165 chr3L 18301329 intergenic CG13700 - chr3L 18301412 intergenic CG13700 - chr3L 18301494 intergenic CG13700 - chr3L_32_18300001 chr3L_18300001 RAL-819 2349 chr3L 18339262 18339264 chr3L 18339424 18339428 4 164 13.0 30.0 21.5 0.2 166 chr3L 18339262 intergenic not near genes chr3L 18339345 intergenic not near genes chr3L 18339428 intergenic not near genes chr3L_4_18335001 chr3L_18335001 RAL-819 2350 chr3L 18342057 18342103 chr3L 18342162 18342208 10 104 0.0 11.0 5.5 1.5 151 chr3L 18342057 intergenic not near genes chr3L 18342132 intergenic not near genes chr3L 18342208 intergenic not near genes chr3L_10_18340001 chr3L_18340001 RAL-819 2351 chr3L 18343526 18343538 chr3L 18343659 18343671 10 133 8.0 9.0 8.5 1.1 145 chr3L 18343526 intergenic not near genes chr3L 18343598 intergenic not near genes chr3L 18343671 intergenic not near genes chr3L_10_18340001 chr3L_18340001 RAL-819 2352 chr3L 18376055 18376091 chr3L 18376169 18376189 15 112 11.5 1.5 6.5 2.0 134 chr3L 18376055 intergenic not near genes chr3L 18376122 intergenic not near genes chr3L 18376189 intergenic not near genes chr3L_15_18375001 chr3L_18375001 RAL-819 2353 chr3L 18383502 18383520 chr3L 18384283 18384301 10 781 11.5 18.0 14.8 0.6 799 chr3L 18383502 intergenic not near genes chr3L 18383902 intergenic not near genes chr3L 18384301 intergenic not near genes chr3L_10_18380001 chr3L_18380001 RAL-819 2354 chr3L 18406109 18406154 chr3L 18406210 18406255 22 101 10.0 12.5 11.2 1.8 146 chr3L 18406109 intergenic not near genes chr3L 18406182 intergenic not near genes chr3L 18406255 intergenic not near genes chr3L_22_18405001 chr3L_18405001 RAL-819 2355 chr3L 18408706 18408759 chr3L 18408817 18408870 20 110 5.0 7.0 6.0 2.9 164 chr3L 18408706 intergenic not near genes chr3L 18408788 intergenic not near genes chr3L 18408870 intergenic not near genes chr3L_20_18405001 chr3L_18405001 RAL-819 2356 chr3L 18417066 18417066 chr3L 19220633 19220637 4 803570 52.5 66.5 59.5 0.1 803571 chr3L 18417066 intergenic not near genes chr3L 18818852 intron CG14073 - chr3L 19220637 intron fz2 - chr3L_4_18815001 chr3L_18815001 RAL-819 2357 chr3L 18436039 18436090 chr3L 18436160 18436213 28 119 9.5 9.0 9.2 2.7 174 chr3L 18436039 intergenic not near genes chr3L 18436126 intergenic not near genes chr3L 18436213 intergenic not near genes chr3L_28_18435001 chr3L_18435001 RAL-819 2358 chr3L 18445225 18445282 chr3L 18445328 18445365 31 99 3.0 8.0 5.5 4.8 140 chr3L 18445225 intergenic not near genes chr3L 18445295 intergenic not near genes chr3L 18445365 intergenic not near genes chr3L_31_18445001 chr3L_18445001 RAL-819 2359 chr3L 18448591 18448621 chr3L 18448708 18448738 22 117 13.5 7.0 10.2 2.0 147 chr3L 18448591 intergenic not near genes chr3L 18448664 intergenic not near genes chr3L 18448738 intergenic not near genes chr3L_22_18445001 chr3L_18445001 RAL-819 2360 chr3L 18456247 18456302 chr3L 18456360 18456415 33 113 9.0 9.0 9.0 3.3 168 chr3L 18456247 intergenic CR44670 - chr3L 18456331 intergenic CR44670 - chr3L 18456415 3` UTR CR44670 - chr3L_33_18455001 chr3L_18455001 RAL-819 2361 chr3L 18506113 18506160 chr3L 18509601 18509648 F-element 31 3487 11.0 11.5 11.2 2.5 3535 chr3L 18506113 intergenic not near genes chr3L 18507880 intergenic not near genes chr3L 18509648 intergenic not near genes chr3L_31_18505001 chr3L_18505001 RAL-819 2362 chr3L 18511363 18511418 chr3L 18511471 18511505 32 99 16.5 9.5 13.0 2.3 142 chr3L 18511363 intergenic not near genes chr3L 18511434 intergenic not near genes chr3L 18511505 intergenic not near genes chr3L_32_18510001 chr3L_18510001 RAL-819 2363 chr3L 18514799 18514819 chr3L 18514907 18514927 15 108 22.5 12.0 17.2 0.8 128 chr3L 18514799 intergenic not near genes chr3L 18514863 intergenic not near genes chr3L 18514927 intergenic not near genes chr3L_15_18510001 chr3L_18510001 RAL-819 2364 chr3L 18514820 18514854 chr3L 18514903 18514941 18 104 13.5 10.0 11.8 1.4 121 chr3L 18514820 intergenic not near genes chr3L 18514880 intergenic not near genes chr3L 18514941 intergenic not near genes chr3L_18_18510001 chr3L_18510001 RAL-819 2365 chr3L 18528605 18528608 chr3L 18537791 18537794 roo 4 9186 20.0 11.5 15.8 0.2 9189 chr3L 18528605 intergenic not near genes chr3L 18533200 intergenic not near genes chr3L 18537794 intergenic not near genes chr3L_4_18530001 chr3L_18530001 RAL-819 2366 chr3L 18528609 18528615 chr3L 18537790 18537790 roo 6 9183 17.5 11.5 14.5 0.4 9181 chr3L 18528609 intergenic not near genes chr3L 18533200 intergenic not near genes chr3L 18537790 intergenic not near genes chr3L_6_18530001 chr3L_18530001 RAL-819 2367 chr3L 18528616 18528658 chr3L 18537786 18537839 roo 28 9184 7.5 10.5 9.0 2.8 9223 chr3L 18528616 intergenic not near genes chr3L 18533228 intergenic not near genes chr3L 18537839 intergenic not near genes chr3L_28_18530001 chr3L_18530001 RAL-819 2368 chr3L 18582190 18582244 chr3L 18582300 18582354 52 104 14.0 6.5 10.2 4.6 164 chr3L 18582190 intergenic not near genes chr3L 18582272 intergenic not near genes chr3L 18582354 intergenic not near genes chr3L_52_18580001 chr3L_18580001 RAL-819 2369 chr3L 18593920 18593982 chr3L 18595925 18595990 Doc 40 2001 8.5 5.0 6.8 5.1 2070 chr3L 18593920 intergenic term - chr3L 18594955 intergenic not near genes chr3L 18595990 intergenic CR45389 + chr3L_40_18590001 chr3L_18590001 RAL-819 2370 chr3L 18629279 18629295 chr3L 18629380 18629396 10 101 6.0 5.0 5.5 1.5 117 chr3L 18629279 intron MYPT-75D + chr3L 18629338 intron MYPT-75D + chr3L 18629396 intron MYPT-75D + chr3L_10_18625001 chr3L_18625001 RAL-819 2371 chr3L 18638559 18638609 chr3L 18638678 18638722 26 119 8.0 10.0 9.0 2.6 163 chr3L 18638559 intron MYPT-75D + chr3L 18638640 intron MYPT-75D + chr3L 18638722 intron MYPT-75D + chr3L_26_18635001 chr3L_18635001 RAL-819 2372 chr3L 18656163 18656175 chr3L 18656273 18656285 11 109 29.0 11.5 20.2 0.5 122 chr3L 18656163 intron MYPT-75D + chr3L 18656224 intron MYPT-75D + chr3L 18656285 intron MYPT-75D + chr3L_11_18655001 chr3L_18655001 RAL-819 2373 chr3L 18656176 18656186 chr3L 18656271 18656296 11 108 24.5 11.5 18.0 0.6 120 chr3L 18656176 intron MYPT-75D + chr3L 18656236 intron MYPT-75D + chr3L 18656296 intron MYPT-75D + chr3L_11_18655001 chr3L_18655001 RAL-819 2374 chr3L 18656190 18656214 chr3L 18656268 18656310 17 106 15.0 10.0 12.5 1.3 120 chr3L 18656190 intron MYPT-75D + chr3L 18656250 intron MYPT-75D + chr3L 18656310 intron MYPT-75D + chr3L_17_18655001 chr3L_18655001 RAL-819 2375 chr3L 18679649 18679705 chr3L 18679780 18679781 33 126 7.5 12.5 10.0 3.0 132 chr3L 18679649 intergenic not near genes chr3L 18679715 intergenic not near genes chr3L 18679781 intergenic not near genes chr3L_33_18675001 chr3L_18675001 RAL-819 2376 chr3L 18692458 18692512 chr3L 18692575 18692629 50 114 9.0 2.5 5.8 7.4 171 chr3L 18692458 intergenic not near genes chr3L 18692544 intergenic not near genes chr3L 18692629 intergenic not near genes chr3L_50_18690001 chr3L_18690001 RAL-819 2377 chr3L 18710766 18710792 chr3L 18718741 18718767 Stalker2 21 7973 10.5 5.0 7.8 2.4 8001 chr3L 18710766 intergenic not near genes chr3L 18714766 intergenic not near genes chr3L 18718767 intergenic not near genes chr3L_21_18710001 chr3L_18710001 RAL-819 2378 chr3L 18721746 18721804 chr3L 18721861 18721920 32 113 5.0 7.5 6.2 4.4 174 chr3L 18721746 intergenic CG12477 - chr3L 18721833 intergenic CG12477 - chr3L 18721920 3` UTR CG12477 - chr3L_32_18720001 chr3L_18720001 RAL-819 2379 chr3L 18753524 18753564 chr3L 18753631 18753671 26 107 8.0 9.0 8.5 2.7 147 chr3L 18753524 intron ftz-f1 - chr3L 18753598 intron ftz-f1 - chr3L 18753671 intron ftz-f1 - chr3L_26_18750001 chr3L_18750001 RAL-819 2380 chr3L 18772388 18772436 chr3L 18781094 18781142 roo 32 8705 18.0 11.5 14.8 2.0 8754 chr3L 18772388 intron ftz-f1 - chr3L 18776765 intron ftz-f1 - chr3L 18781142 intron ftz-f1 - chr3L_32_18775001 chr3L_18775001 RAL-819 2381 chr3L 18797286 18797338 chr3L 18797395 18797447 37 108 10.5 15.0 12.8 2.7 161 chr3L 18797286 intron ftz-f1 - chr3L 18797366 intron ftz-f1 - chr3L 18797447 intron ftz-f1 - chr3L_37_18795001 chr3L_18795001 RAL-819 2382 chr3L 18799075 18799121 chr3L 18799187 18799228 26 110 11.0 12.5 11.8 2.0 153 chr3L 18799075 intron ftz-f1 - chr3L 18799152 intron ftz-f1 - chr3L 18799228 intron ftz-f1 - chr3L_26_18795001 chr3L_18795001 RAL-819 2383 chr3L 18810144 18810177 chr3L 18810251 18810284 20 107 7.5 3.5 5.5 3.1 140 chr3L 18810144 intron CG14073 - chr3L 18810214 intron CG14073 - chr3L 18810284 intron CG14073 - chr3L_20_18810001 chr3L_18810001 RAL-819 2384 chr3L 18843845 18843870 chr3L 18843968 18843972 21 121 27.5 11.5 19.5 1.0 127 chr3L 18843845 intron Indy - chr3L 18843908 intron Indy - chr3L 18843972 intron Indy - chr3L_21_18840001 chr3L_18840001 RAL-819 2385 chr3L 18843887 18843901 chr3L 18843964 18844024 7 116 16.0 10.0 13.0 0.5 137 chr3L 18843887 intron Indy - chr3L 18843956 intron Indy - chr3L 18844024 intron Indy - chr3L_7_18840001 chr3L_18840001 RAL-819 2386 chr3L 18853980 18854024 chr3L 18854106 18854150 29 126 9.0 7.0 8.0 3.2 170 chr3L 18853980 intergenic CR45387 + chr3L 18854065 intergenic CR45387 + chr3L 18854150 intergenic CR45387 + chr3L_29_18850001 chr3L_18850001 RAL-819 2387 chr3L 18863951 18863959 chr3L 18864061 18864069 11 110 24.0 0.0 12.0 0.8 118 chr3L 18863951 intron CG6865 + chr3L 18864010 intron CG6865 + chr3L 18864069 intron CG6865 + chr3L_11_18860001 chr3L_18860001 RAL-819 2388 chr3L 18868932 18868951 chr3L 18869059 18869078 11 127 25.0 13.5 19.2 0.5 146 chr3L 18868932 3` UTR Dysb + chr3L 18869005 3` UTR Dysb + chr3L 18869078 3` UTR Dysb + chr3L_11_18865001 chr3L_18865001 RAL-819 2389 chr3L 18868952 18868981 chr3L 18869058 18869087 21 123 12.5 12.5 12.5 1.6 135 chr3L 18868952 3` UTR Dysb + chr3L 18869020 3` UTR Dysb + chr3L 18869087 3` UTR Dysb + chr3L_21_18865001 chr3L_18865001 RAL-819 2390 chr3L 18888229 18888289 chr3L 18888339 18888399 45 109 7.0 9.0 8.0 5.0 170 chr3L 18888229 intron CG3961 - chr3L 18888314 intron CG3961 - chr3L 18888399 intron CG3961 - chr3L_45_18885001 chr3L_18885001 RAL-819 2391 chr3L 18895678 18895706 chr3L 18895791 18895819 23 112 11.0 15.0 13.0 1.6 141 chr3L 18895678 intron CG3902 - chr3L 18895748 intron CG3902 - chr3L 18895819 intron CG3902 - chr3L_23_18895001 chr3L_18895001 RAL-819 2392 chr3L 18935809 18935865 chr3L 18935923 18935979 29 114 5.0 9.5 7.2 3.5 170 chr3L 18935809 intron CG32204 - chr3L 18935894 intron CG32204 - chr3L 18935979 intron CG32204 - chr3L_29_18935001 chr3L_18935001 RAL-819 2393 chr3L 18942830 18942874 chr3L 18942968 18943006 38 134 9.0 7.5 8.2 4.1 176 chr3L 18942830 intron CG32204 - chr3L 18942918 intron CG32204 - chr3L 18943006 intron CG32204 - chr3L_38_18940001 chr3L_18940001 RAL-819 2394 chr3L 18948862 18948906 chr3L 18949113 18949156 24 251 4.5 12.0 8.2 2.6 294 chr3L 18948862 intergenic not near genes chr3L 18949009 intergenic not near genes chr3L 18949156 intergenic not near genes chr3L_24_18945001 chr3L_18945001 RAL-819 2395 chr3L 18958575 18958624 chr3L 18958676 18958725 45 99 6.5 8.5 7.5 5.3 150 chr3L 18958575 intergenic not near genes chr3L 18958650 intergenic not near genes chr3L 18958725 intergenic not near genes chr3L_45_18955001 chr3L_18955001 RAL-819 2396 chr3L 19008824 19008870 chr3L 19009175 19009233 jockey 23 360 10.5 11.5 11.0 1.9 409 chr3L 19008824 intron nkd - chr3L 19009028 intron nkd - chr3L 19009233 intron nkd - chr3L_23_19005001 chr3L_19005001 RAL-819 2397 chr3L 19015151 19015164 chr3L 19015261 19015274 10 109 15.0 0.0 7.5 1.2 123 chr3L 19015151 intron nkd - chr3L 19015212 intron nkd - chr3L 19015274 intron nkd - chr3L_10_19015001 chr3L_19015001 RAL-819 2398 chr3L 19029426 19029480 chr3L 19029553 19029607 40 120 10.0 15.5 12.8 2.9 181 chr3L 19029426 intron nkd - chr3L 19029516 intron nkd - chr3L 19029607 intron nkd - chr3L_40_19025001 chr3L_19025001 RAL-819 2399 chr3L 19082010 19082067 chr3L 19082137 19082148 42 124 13.5 11.0 12.2 3.2 138 chr3L 19082010 intron Mkp3 - chr3L 19082079 intron Mkp3 - chr3L 19082148 intron Mkp3 - chr3L_42_19080001 chr3L_19080001 RAL-819 2400 chr3L 19101689 19101743 chr3L 19102086 19102140 39 396 5.0 8.5 6.8 5.0 451 chr3L 19101689 intergenic not near genes chr3L 19101914 intergenic not near genes chr3L 19102140 intergenic not near genes chr3L_39_19100001 chr3L_19100001 RAL-819 2401 chr3L 19111341 19111370 chr3L 19111453 19111482 32 109 11.0 24.0 17.5 1.7 141 chr3L 19111341 intron CG14082 - chr3L 19111412 intron CG14082 - chr3L 19111482 intron CG14082 - chr3L_32_19110001 chr3L_19110001 RAL-819 2402 chr3L 19115624 19115645 chr3L 19115823 19115843 BS 10 196 28.0 16.5 22.2 0.4 219 chr3L 19115624 intron CG14082 - chr3L 19115734 intron CG14082 - chr3L 19115843 intron CG14082 - chr3L_10_19115001 chr3L_19115001 RAL-819 2403 chr3L 19115646 19115677 chr3L 19115819 19115831 BS 16 188 15.5 15.5 15.5 1.0 185 chr3L 19115646 intron CG14082 - chr3L 19115738 intron CG14082 - chr3L 19115831 intron CG14082 - chr3L_16_19115001 chr3L_19115001 RAL-819 2404 chr3L 19117017 19117076 chr3L 19124489 19124548 mdg1 53 7465 5.0 8.0 6.5 7.1 7531 chr3L 19117017 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124548 intron CG14082 - chr3L_53_19120001 chr3L_19120001 RAL-819 2405 chr3L 19138545 19138547 chr3L 19138641 19138647 4 101 35.0 22.0 28.5 0.1 102 chr3L 19138545 intron CG14082 - chr3L 19138596 intron CG14082 - chr3L 19138647 intron CG14082 - chr3L_4_19135001 chr3L_19135001 RAL-819 2406 chr3L 19138548 19138552 chr3L 19138639 19138658 8 99 30.0 21.0 25.5 0.3 110 chr3L 19138548 intron CG14082 - chr3L 19138603 intron CG14082 - chr3L 19138658 intron CG14082 - chr3L_8_19135001 chr3L_19135001 RAL-819 2407 chr3L 19138554 19138588 chr3L 19138638 19138694 21 97 7.5 20.5 14.0 1.4 140 chr3L 19138554 intron CG14082 - chr3L 19138624 intron CG14082 - chr3L 19138694 intron CG14082 - chr3L_21_19135001 chr3L_19135001 RAL-819 2408 chr3L 19173691 19173743 chr3L 19173867 19173919 30 167 9.0 13.0 11.0 2.5 228 chr3L 19173691 intron fz2 - chr3L 19173805 intron fz2 - chr3L 19173919 intron fz2 - chr3L_30_19170001 chr3L_19170001 RAL-819 2409 chr3L 19182370 19182418 chr3L 19182465 19182524 46 103 7.5 12.0 9.8 4.3 154 chr3L 19182370 intron fz2 - chr3L 19182447 intron fz2 - chr3L 19182524 intron fz2 - chr3L_46_19180001 chr3L_19180001 RAL-819 2410 chr3L 19208035 19208090 chr3L 19209434 19209487 Doc 41 1396 14.0 13.5 13.8 2.8 1452 chr3L 19208035 intron fz2 - chr3L 19208761 intron fz2 - chr3L 19209487 intron fz2 - chr3L_41_19205001 chr3L_19205001 RAL-819 2411 chr3L 19210103 19210137 chr3L 19210224 19210248 25 119 0.0 12.0 6.0 3.6 145 chr3L 19210103 intron fz2 - chr3L 19210176 intron fz2 - chr3L 19210248 intron fz2 - chr3L_25_19210001 chr3L_19210001 RAL-819 2412 chr3L 19210138 19210141 chr3L 19210213 19210262 5 112 0.0 7.5 3.8 1.0 124 chr3L 19210138 intron fz2 - chr3L 19210200 intron fz2 - chr3L 19210262 intron fz2 - chr3L_5_19210001 chr3L_19210001 RAL-819 2413 chr3L 9307795 9307795 chr3L 19220636 19220636 6 9912841 49.5 67.0 58.2 0.1 9912841 chr3L 9307795 intergenic not near genes chr3L 14264216 intergenic not near genes chr3L 19220636 intron fz2 - chr3L_6_14260001 chr3L_14260001 RAL-819 2414 chr3L 9307795 9307796 chr3L 19220637 19220637 5 9912841 49.0 67.5 58.2 0.1 9912842 chr3L 9307795 intergenic not near genes chr3L 14264216 intergenic not near genes chr3L 19220637 intron fz2 - chr3L_5_14260001 chr3L_14260001 RAL-819 2415 chr3L 19220637 19220637 chr3L 22908066 22908067 5 3687429 72.0 61.0 66.5 0.1 3687430 chr3L 19220637 intron fz2 - chr3L 21064352 intron siz + chr3L 22908067 intergenic not near genes chr3L_5_21060001 chr3L_21060001 RAL-819 2416 chr3L 19222353 19222397 chr3L 19222499 19222543 29 144 11.0 11.0 11.0 2.4 190 chr3L 19222353 intron fz2 - chr3L 19222448 intron fz2 - chr3L 19222543 intron fz2 - chr3L_29_19220001 chr3L_19220001 RAL-819 2417 chr3L 19238699 19238751 chr3L 19238831 19238883 43 131 9.5 11.5 10.5 3.7 184 chr3L 19238699 intergenic not near genes chr3L 19238791 intergenic not near genes chr3L 19238883 intergenic not near genes chr3L_43_19235001 chr3L_19235001 RAL-819 2418 chr3L 19244090 19244139 chr3L 19244193 19244235 35 100 10.5 16.5 13.5 2.4 145 chr3L 19244090 intergenic not near genes chr3L 19244162 intergenic not near genes chr3L 19244235 intergenic not near genes chr3L_35_19240001 chr3L_19240001 RAL-819 2419 chr3L 19262212 19262241 chr3L 19262319 19262348 23 106 0.5 25.0 12.8 1.7 136 chr3L 19262212 3` UTR Bet1 + chr3L 19262280 3` UTR,3` UTR Bet1 +,Max - chr3L 19262348 3` UTR,3` UTR Bet1 +,Max - chr3L_23_19260001 chr3L_19260001 RAL-819 2420 chr3L 19279651 19279682 chr3L 19279768 19279798 7 115 38.0 7.5 22.8 0.3 147 chr3L 19279651 intron CG14086 + chr3L 19279724 exon CG14086 + chr3L 19279798 exon CG14086 + chr3L_7_19275001 chr3L_19275001 RAL-819 2421 chr3L 19279692 19279708 chr3L 19279766 19279808 9 99 22.0 7.0 14.5 0.6 116 chr3L 19279692 intron CG14086 + chr3L 19279750 exon CG14086 + chr3L 19279808 exon CG14086 + chr3L_9_19275001 chr3L_19275001 RAL-819 2422 chr3L 19365925 19365929 chr3L 19366007 19366051 7 115 0.0 13.0 6.5 0.9 126 chr3L 19365925 intron CG32206 - chr3L 19365988 intron CG32206 - chr3L 19366051 intron CG32206 - chr3L_7_19365001 chr3L_19365001 RAL-819 2423 chr3L 19390700 19390718 chr3L 19390823 19390841 14 123 23.0 14.5 18.8 0.7 141 chr3L 19390700 intron CG32206 - chr3L 19390770 intron CG32206 - chr3L 19390841 intron CG32206 - chr3L_14_19390001 chr3L_19390001 RAL-819 2424 chr3L 19390719 19390760 chr3L 19390822 19390833 19 118 5.5 14.5 10.0 1.7 114 chr3L 19390719 intron CG32206 - chr3L 19390776 intron CG32206 - chr3L 19390833 intron CG32206 - chr3L_19_19390001 chr3L_19390001 RAL-819 2425 chr3L 19398915 19398932 chr3L 19403657 19403668 F-element 13 4739 7.0 11.5 9.2 1.3 4753 chr3L 19398915 intron CG32206 - chr3L 19401292 intron CG32206 - chr3L 19403668 intron CG32206 - chr3L_13_19400001 chr3L_19400001 RAL-819 2426 chr3L 19439232 19439291 chr3L 19439355 19439410 16 121 8.5 13.5 11.0 1.3 178 chr3L 19439232 intergenic not near genes chr3L 19439321 intergenic not near genes chr3L 19439410 intergenic not near genes chr3L_16_19435001 chr3L_19435001 RAL-819 2427 chr3L 19488477 19488501 chr3L 19488558 19488608 16 105 22.5 19.0 20.8 0.7 131 chr3L 19488477 intergenic pncr009:3L -,CG32212 + chr3L 19488542 intergenic pncr009:3L -,CG32212 + chr3L 19488608 intergenic pncr009:3L -,CG32212 + chr3L_16_19485001 chr3L_19485001 RAL-819 2428 chr3L 19498428 19498439 chr3L 19503630 19503640 9 5202 81.5 95.5 88.5 0.1 5212 chr3L 19498428 3` UTR CG9451 - chr3L 19501034 3` UTR CG9452 - chr3L 19503640 5` UTR CG9452 - chr3L_9_19500001 chr3L_19500001 RAL-819 2429 chr3L 19498427 19498477 chr3L 19503644 19503683 39 5205 90.5 92.5 91.5 0.4 5256 chr3L 19498427 3` UTR CG9451 - chr3L 19501055 3` UTR CG9452 - chr3L 19503683 5` UTR CG9452 - chr3L_39_19500001 chr3L_19500001 RAL-819 2430 chr3L 19527903 19527956 chr3L 19528007 19528060 48 103 19.0 15.5 17.2 2.6 157 chr3L 19527903 intergenic not near genes chr3L 19527982 intergenic not near genes chr3L 19528060 intergenic not near genes chr3L_48_19525001 chr3L_19525001 RAL-819 2431 chr3L 19669480 19669519 chr3L 19669595 19669615 4 104 24.5 18.5 21.5 0.2 135 chr3L 19669480 intergenic not near genes chr3L 19669548 intergenic not near genes chr3L 19669615 intergenic not near genes chr3L_4_19665001 chr3L_19665001 RAL-819 2432 chr3L 6508683 6508691 chr3L 19692540 19692542 4 13183852 46.5 83.5 65.0 0.1 13183859 chr3L 6508683 intron sfl + chr3L 13100612 intergenic not near genes chr3L 19692542 intron verm - chr3L_4_13100001 chr3L_13100001 RAL-819 2433 chr3L 19785448 19785483 chr3L 19785540 19785565 16 97 14.5 12.5 13.5 1.1 117 chr3L 19785448 intron,intron CG42637 -,Gyc76C - chr3L 19785506 intron,intron CG42637 -,Gyc76C - chr3L 19785565 intron,intron CG42637 -,Gyc76C - chr3L_16_19785001 chr3L_19785001 RAL-819 2434 chr3L 19820275 19820319 chr3L 19827849 19827868 412 30 7572 12.0 13.5 12.8 2.2 7593 chr3L 19820275 intron Deaf1 + chr3L 19824072 intron Deaf1 + chr3L 19827868 intron Deaf1 + chr3L_30_19820001 chr3L_19820001 RAL-819 2435 chr3L 19848506 19848535 chr3L 19857693 19857751 roo 22 9209 12.5 9.5 11.0 1.8 9245 chr3L 19848506 intron Papss + chr3L 19853128 intron Papss + chr3L 19857751 intron Papss + chr3L_22_19850001 chr3L_19850001 RAL-819 2436 chr3L 19861798 19861852 chr3L 19863611 19863665 S-element 24 1812 8.0 8.5 8.2 2.6 1867 chr3L 19861798 5` UTR CR45433 + chr3L 19862732 intergenic not near genes chr3L 19863665 intergenic not near genes chr3L_24_19860001 chr3L_19860001 RAL-819 2437 chr3L 19933511 19933561 chr3L 19934358 19934408 25 846 5.5 8.5 7.0 3.1 897 chr3L 19933511 intergenic CR45678 + chr3L 19933960 5` UTR CR45678 + chr3L 19934408 intergenic CR45678 + chr3L_25_19930001 chr3L_19930001 RAL-819 2438 chr3L 19935900 19935956 chr3L 19936159 19936215 37 259 9.0 7.5 8.2 4.0 315 chr3L 19935900 intergenic not near genes chr3L 19936058 intergenic not near genes chr3L 19936215 intergenic not near genes chr3L_37_19935001 chr3L_19935001 RAL-819 2439 chr3L 19981179 19981235 chr3L 19981284 19981340 39 104 10.0 11.0 10.5 3.4 161 chr3L 19981179 intergenic not near genes chr3L 19981260 intergenic CG17732 + chr3L 19981340 intergenic CG17732 + chr3L_39_19980001 chr3L_19980001 RAL-819 2440 chr3L 20061501 20061554 chr3L 20062185 20062227 46 682 8.0 19.0 13.5 3.2 726 chr3L 20061501 intron sNPF-R - chr3L 20061864 intron sNPF-R - chr3L 20062227 intron sNPF-R - chr3L_46_20060001 chr3L_20060001 RAL-819 2441 chr3L 20076812 20076866 chr3L 20076974 20077028 47 160 13.0 14.5 13.8 3.2 216 chr3L 20076812 intron sNPF-R - chr3L 20076920 intron sNPF-R - chr3L 20077028 intron sNPF-R - chr3L_47_20075001 chr3L_20075001 RAL-819 2442 chr3L 20086765 20086788 chr3L 20086868 20086891 21 103 19.0 0.5 9.8 1.9 126 chr3L 20086765 intron sNPF-R - chr3L 20086828 intron sNPF-R - chr3L 20086891 intron sNPF-R - chr3L_21_20085001 chr3L_20085001 RAL-819 2443 chr3L 20086789 20086819 chr3L 20086867 20086897 11 94 9.5 0.5 5.0 1.8 108 chr3L 20086789 intron sNPF-R - chr3L 20086843 intron sNPF-R - chr3L 20086897 intron sNPF-R - chr3L_11_20085001 chr3L_20085001 RAL-819 2444 chr3L 20113453 20113470 chr3L 20113573 20113590 17 120 30.0 15.5 22.8 0.7 137 chr3L 20113453 intergenic not near genes chr3L 20113522 intergenic not near genes chr3L 20113590 intergenic not near genes chr3L_17_20110001 chr3L_20110001 RAL-819 2445 chr3L 20113471 20113507 chr3L 20113571 20113621 25 118 14.5 15.0 14.8 1.6 150 chr3L 20113471 intergenic not near genes chr3L 20113546 intergenic not near genes chr3L 20113621 intergenic not near genes chr3L_25_20110001 chr3L_20110001 RAL-819 2446 chr3L 20113637 20113688 chr3L 20122919 20122970 roo 42 9281 9.0 11.5 10.2 3.8 9333 chr3L 20113637 intergenic not near genes chr3L 20118304 intergenic not near genes chr3L 20122970 intergenic not near genes chr3L_42_20115001 chr3L_20115001 RAL-819 2447 chr3L 20143059 20143112 chr3L 20143164 20143217 48 104 11.0 14.0 12.5 3.6 158 chr3L 20143059 intergenic not near genes chr3L 20143138 intergenic not near genes chr3L 20143217 intergenic not near genes chr3L_48_20140001 chr3L_20140001 RAL-819 2448 chr3L 20148269 20148318 chr3L 20148375 20148433 25 112 7.0 8.0 7.5 2.9 164 chr3L 20148269 intergenic not near genes chr3L 20148351 intergenic not near genes chr3L 20148433 intergenic not near genes chr3L_25_20145001 chr3L_20145001 RAL-819 2449 chr3L 20158875 20158927 chr3L 20159042 20159094 45 165 10.5 19.0 14.8 2.8 219 chr3L 20158875 intron CG42674 - chr3L 20158984 intron CG42674 - chr3L 20159094 intron CG42674 - chr3L_45_20155001 chr3L_20155001 RAL-819 2450 chr3L 20212580 20212585 chr3L 20218182 20218187 mdg3 5 5602 44.5 0.5 22.5 0.2 5607 chr3L 20212580 intergenic CG7017 - chr3L 20215384 intergenic not near genes chr3L 20218187 intergenic CG6933 - chr3L_5_20215001 chr3L_20215001 RAL-819 2451 chr3L 20218209 20218228 chr3L 20218347 20218369 20 140 0.5 24.0 12.2 1.5 160 chr3L 20218209 intergenic CG6933 - chr3L 20218289 intergenic CG6933 - chr3L 20218369 intergenic CG6933 - chr3L_20_20215001 chr3L_20215001 RAL-819 2452 chr3L 20257308 20257363 chr3L 20258453 20258508 pogo 38 1144 13.5 9.5 11.5 3.0 1200 chr3L 20257308 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258508 intron rdgC + chr3L_38_20255001 chr3L_20255001 RAL-819 2453 chr3L 20283651 20283707 chr3L 20283760 20283816 46 107 7.5 12.5 10.0 4.2 165 chr3L 20283651 intron gogo - chr3L 20283734 intron gogo - chr3L 20283816 intron gogo - chr3L_46_20280001 chr3L_20280001 RAL-819 2454 chr3L 20315624 20315682 chr3L 20315729 20315787 45 102 10.5 13.0 11.8 3.5 163 chr3L 20315624 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315706 3` UTR,intron alphaSnap +,CR43875 - chr3L 20315787 3` UTR,intron alphaSnap +,CR43875 - chr3L_45_20315001 chr3L_20315001 RAL-819 2455 chr3L 20321119 20321129 chr3L 20342900 20342910 17.6 11 21781 29.5 58.0 43.8 0.2 21791 chr3L 20321119 exon Spn77Bb + chr3L 20332014 intergenic not near genes chr3L 20342910 exon Spn77Bc + chr3L_11_20330001 chr3L_20330001 RAL-819 2456 chr3L 20405555 20405608 chr3L 20405664 20405717 55 105 17.5 14.5 16.0 3.2 162 chr3L 20405555 intergenic not near genes chr3L 20405636 intergenic not near genes chr3L 20405717 intergenic not near genes chr3L_55_20405001 chr3L_20405001 RAL-819 2457 chr3L 20462561 20462604 chr3L 20462667 20462710 32 104 12.0 17.0 14.5 2.1 149 chr3L 20462561 intron atk - chr3L 20462636 intron atk - chr3L 20462710 intron atk - chr3L_32_20460001 chr3L_20460001 RAL-819 2458 chr3L 20476732 20476781 chr3L 20484356 20484405 springer 45 7622 15.0 23.5 19.2 2.2 7673 chr3L 20476732 3` UTR isoQC + chr3L 20480568 intergenic not near genes chr3L 20484405 3` UTR ZnT77C - chr3L_45_20480001 chr3L_20480001 RAL-819 2459 chr3L 20487640 20487674 chr3L 20488116 20488150 INE-1 20 475 20.0 9.5 14.8 1.3 510 chr3L 20487640 intron ZnT77C - chr3L 20487895 intron ZnT77C - chr3L 20488150 exon ZnT77C - chr3L_20_20485001 chr3L_20485001 RAL-819 2460 chr3L 20525228 20525228 chr3L 22908066 22908067 12 2382838 45.0 61.0 53.0 0.2 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_12_21715001 chr3L_21715001 RAL-819 2461 chr3L 20525229 20525229 chr3L 22908066 22908067 12 2382838 43.5 61.0 52.2 0.2 2382838 chr3L 20525229 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_12_21715001 chr3L_21715001 RAL-819 2462 chr3L 20525229 20525229 chr3L 24821490 24821494 9 4296264 43.5 38.5 41.0 0.2 4296265 chr3L 20525229 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_9_22670001 chr3L_22670001 RAL-819 2463 chr3L 20525230 20525230 chr3L 24821493 24821494 17 4296264 43.0 39.0 41.0 0.4 4296264 chr3L 20525230 intron CG4825 - chr3L 22673362 intron CG14457 + chr3L 24821494 intergenic not near genes chr3L_17_22670001 chr3L_22670001 RAL-819 2464 chr3L 20590040 20590097 chr3L 20590604 20590645 412 42 559 8.5 11.0 9.8 3.9 605 chr3L 20590040 intergenic not near genes chr3L 20590342 intergenic not near genes chr3L 20590645 intergenic not near genes chr3L_42_20590001 chr3L_20590001 RAL-819 2465 chr3L 20739469 20739526 chr3L 20739607 20739666 21 140 6.5 11.0 8.8 2.1 197 chr3L 20739469 intron CG13252 + chr3L 20739568 intron CG13252 + chr3L 20739666 intron CG13252 + chr3L_21_20735001 chr3L_20735001 RAL-819 2466 chr3L 20819604 20819645 chr3L 20819849 20819893 18 246 16.5 10.0 13.2 1.3 289 chr3L 20819604 intron Pka-R1 + chr3L 20819748 intron Pka-R1 + chr3L 20819893 intron Pka-R1 + chr3L_18_20815001 chr3L_20815001 RAL-819 2467 chr3L 20821258 20821311 chr3L 20824894 20824947 NOF 43 3636 9.0 8.0 8.5 4.5 3689 chr3L 20821258 intron Pka-R1 + chr3L 20823102 intron Pka-R1 + chr3L 20824947 intron Pka-R1 + chr3L_43_20820001 chr3L_20820001 RAL-819 2468 chr3L 20849247 20849297 chr3L 20849351 20849400 37 103 12.5 17.5 15.0 2.3 153 chr3L 20849247 intron CG32432 - chr3L 20849324 intron CG32432 - chr3L 20849400 intron CG32432 - chr3L_37_20845001 chr3L_20845001 RAL-819 2469 chr3L 20872551 20872600 chr3L 20872690 20872740 25 138 14.0 7.0 10.5 2.2 189 chr3L 20872551 intron CG32432 - chr3L 20872646 intron CG32432 - chr3L 20872740 intron CG32432 - chr3L_25_20870001 chr3L_20870001 RAL-819 2470 chr3L 20890490 20890524 chr3L 20890571 20890585 9 79 26.0 15.5 20.8 0.4 95 chr3L 20890490 intergenic not near genes chr3L 20890538 intergenic not near genes chr3L 20890585 intergenic not near genes chr3L_9_20890001 chr3L_20890001 RAL-819 2471 chr3L 20890895 20890920 chr3L 20891025 20891038 17 128 18.0 16.0 17.0 0.9 143 chr3L 20890895 intergenic not near genes chr3L 20890966 intergenic not near genes chr3L 20891038 intergenic not near genes chr3L_17_20890001 chr3L_20890001 RAL-819 2472 chr3L 20890921 20890943 chr3L 20891014 20891031 17 121 9.0 10.0 9.5 1.6 110 chr3L 20890921 intergenic not near genes chr3L 20890976 intergenic not near genes chr3L 20891031 intergenic not near genes chr3L_17_20890001 chr3L_20890001 RAL-819 2473 chr3L 20896901 20896937 chr3L 20897005 20897045 19 100 17.5 14.0 15.8 1.1 144 chr3L 20896901 3` UTR Sfp77F - chr3L 20896973 3` UTR Sfp77F - chr3L 20897045 3` UTR Sfp77F - chr3L_19_20895001 chr3L_20895001 RAL-819 2474 chr3L 20913741 20913779 chr3L 20913831 20913886 56 95 9.0 14.5 11.8 4.4 145 chr3L 20913741 intergenic CR43930 - chr3L 20913814 intergenic CR43930 - chr3L 20913886 intergenic CR43930 - chr3L_56_20910001 chr3L_20910001 RAL-819 2475 chr3L 20917074 20917123 chr3L 20917166 20917209 40 100 17.5 15.0 16.2 2.3 135 chr3L 20917074 intergenic not near genes chr3L 20917142 intergenic not near genes chr3L 20917209 intergenic not near genes chr3L_40_20915001 chr3L_20915001 RAL-819 2476 chr3L 20931775 20931833 chr3L 20931883 20931941 34 107 8.0 7.5 7.8 3.9 166 chr3L 20931775 intron fng - chr3L 20931858 intron fng - chr3L 20931941 intron fng - chr3L_34_20930001 chr3L_20930001 RAL-819 2477 chr3L 20948642 20948699 chr3L 20948758 20948815 47 113 9.5 8.0 8.8 4.8 173 chr3L 20948642 intron fng - chr3L 20948728 intron fng - chr3L 20948815 intron fng - chr3L_47_20945001 chr3L_20945001 RAL-819 2478 chr3L 20979128 20979180 chr3L 20979535 20979587 44 406 11.0 14.5 12.8 3.2 459 chr3L 20979128 intergenic not near genes chr3L 20979358 intergenic not near genes chr3L 20979587 intergenic not near genes chr3L_44_20975001 chr3L_20975001 RAL-819 2479 chr3L 20986736 20986776 chr3L 20986839 20986874 29 99 22.5 18.5 20.5 1.3 138 chr3L 20986736 intergenic not near genes chr3L 20986805 intergenic not near genes chr3L 20986874 intergenic not near genes chr3L_29_20985001 chr3L_20985001 RAL-819 2480 chr3L 20986777 20986790 chr3L 20986835 20986893 16 99 15.0 16.0 15.5 1.0 116 chr3L 20986777 intergenic not near genes chr3L 20986835 intergenic not near genes chr3L 20986893 intergenic not near genes chr3L_16_20985001 chr3L_20985001 RAL-819 2481 chr3L 21014894 21014945 chr3L 21023394 21023451 Tirant 52 8496 16.0 17.0 16.5 3.0 8557 chr3L 21014894 intron skd - chr3L 21019172 intron skd - chr3L 21023451 intron skd - chr3L_52_21015001 chr3L_21015001 RAL-819 2482 chr3L 21110159 21110162 chr3L 21110438 21110441 4 279 30.5 11.0 20.8 0.2 282 chr3L 21110159 intron ko - chr3L 21110300 intron ko - chr3L 21110441 intron ko - chr3L_4_21110001 chr3L_21110001 RAL-819 2483 chr3L 21110163 21110212 chr3L 21110435 21110490 27 279 7.5 10.0 8.8 2.8 327 chr3L 21110163 intron ko - chr3L 21110326 intron ko - chr3L 21110490 intron ko - chr3L_27_21110001 chr3L_21110001 RAL-819 2484 chr3L 21151838 21151892 chr3L 21156947 21157002 flea 32 5109 17.5 10.5 14.0 2.1 5164 chr3L 21151838 intron Ac78C - chr3L 21154420 intron Ac78C - chr3L 21157002 intron Ac78C - chr3L_32_21150001 chr3L_21150001 RAL-819 2485 chr3L 21151893 21151897 chr3L 21156946 21157007 flea 7 5100 12.0 9.5 10.8 0.6 5114 chr3L 21151893 intron Ac78C - chr3L 21154450 intron Ac78C - chr3L 21157007 intron Ac78C - chr3L_7_21150001 chr3L_21150001 RAL-819 2486 chr3L 21158571 21158629 chr3L 21158672 21158730 57 97 8.0 8.0 8.0 6.3 159 chr3L 21158571 intron Ac78C - chr3L 21158650 intron Ac78C - chr3L 21158730 intron Ac78C - chr3L_57_21155001 chr3L_21155001 RAL-819 2487 chr3L 21172812 21172873 chr3L 21172937 21172981 25 123 9.0 7.5 8.2 2.7 169 chr3L 21172812 intergenic chb +,asparagine-synthetase + chr3L 21172896 5` UTR chb + chr3L 21172981 5` UTR chb + chr3L_25_21170001 chr3L_21170001 RAL-819 2488 chr3L 21186032 21186064 chr3L 21186133 21186155 14 97 32.0 16.0 24.0 0.6 123 chr3L 21186032 intron CG42337 - chr3L 21186094 intron CG42337 - chr3L 21186155 intron CG42337 - chr3L_14_21185001 chr3L_21185001 RAL-819 2489 chr3L 21186067 21186073 chr3L 21186125 21186151 5 77 26.0 12.0 19.0 0.2 84 chr3L 21186067 intron CG42337 - chr3L 21186109 intron CG42337 - chr3L 21186151 intron CG42337 - chr3L_5_21185001 chr3L_21185001 RAL-819 2490 chr3L 21186076 21186086 chr3L 21186124 21186182 9 90 21.5 12.5 17.0 0.5 106 chr3L 21186076 intron CG42337 - chr3L 21186129 intron CG42337 - chr3L 21186182 intron CG42337 - chr3L_9_21185001 chr3L_21185001 RAL-819 2491 chr3L 21243724 21243762 chr3L 21251309 21251318 412 23 7578 15.0 19.0 17.0 1.3 7594 chr3L 21243724 intron Eip78C + chr3L 21247521 intron Eip78C + chr3L 21251318 intron Eip78C + chr3L_23_21245001 chr3L_21245001 RAL-819 2492 chr3L 21256509 21256554 chr3L 21256628 21256673 23 115 20.5 16.5 18.5 1.2 164 chr3L 21256509 intron Eip78C + chr3L 21256591 intron Eip78C + chr3L 21256673 intron Eip78C + chr3L_23_21255001 chr3L_21255001 RAL-819 2493 chr3L 21256555 21256558 chr3L 21256627 21256677 21 98 18.5 16.5 17.5 1.1 122 chr3L 21256555 intron Eip78C + chr3L 21256616 intron Eip78C + chr3L 21256677 intron Eip78C + chr3L_21_21255001 chr3L_21255001 RAL-819 2494 chr3L 21256559 21256566 chr3L 21256626 21256648 6 97 14.0 16.5 15.2 0.4 89 chr3L 21256559 intron Eip78C + chr3L 21256604 intron Eip78C + chr3L 21256648 intron Eip78C + chr3L_6_21255001 chr3L_21255001 RAL-819 2495 chr3L 21303687 21303698 chr3L 21303799 21303810 6 112 30.5 17.0 23.8 0.2 123 chr3L 21303687 intron CG11309 - chr3L 21303748 intron CG11309 - chr3L 21303810 intron CG11309 - chr3L_6_21300001 chr3L_21300001 RAL-819 2496 chr3L 21303699 21303738 chr3L 21303798 21303843 42 110 15.5 16.0 15.8 2.5 144 chr3L 21303699 intron CG11309 - chr3L 21303771 intron CG11309 - chr3L 21303843 intron CG11309 - chr3L_42_21300001 chr3L_21300001 RAL-819 2497 chr3L 21306125 21306176 chr3L 21315309 21315360 roo 39 9183 14.5 11.5 13.0 2.8 9235 chr3L 21306125 3` UTR CG7632 + chr3L 21310742 intron Pc - chr3L 21315360 3` UTR Pc - chr3L_39_21310001 chr3L_21310001 RAL-819 2498 chr3L 21355677 21355695 chr3L 21358522 21358535 11 2844 100.0 129.5 114.8 0.1 2858 chr3L 21355677 exon CG12971 - chr3L 21357106 intergenic not near genes chr3L 21358535 exon CG32437 + chr3L_11_21355001 chr3L_21355001 RAL-819 2499 chr3L 21355676 21355694 chr3L 21358536 21358575 40 2850 100.0 123.5 111.8 0.4 2899 chr3L 21355676 exon CG12971 - chr3L 21357126 intergenic not near genes chr3L 21358575 exon CG32437 + chr3L_40_21355001 chr3L_21355001 RAL-819 2500 chr3L 21361702 21361718 chr3L 21362681 21362697 G2 11 978 17.5 13.5 15.5 0.7 995 chr3L 21361702 intergenic CG32440 + chr3L 21362200 intergenic not near genes chr3L 21362697 intergenic not near genes chr3L_11_21360001 chr3L_21360001 RAL-819 2501 chr3L 21361719 21361753 chr3L 21362680 21362732 G2 26 977 7.0 12.5 9.8 2.4 1013 chr3L 21361719 intergenic CG32440 + chr3L 21362226 intergenic not near genes chr3L 21362732 intergenic not near genes chr3L_26_21360001 chr3L_21360001 RAL-819 2502 chr3L 21372697 21372748 chr3L 21379230 21379276 McClintock 42 6532 13.0 8.0 10.5 3.7 6579 chr3L 21372697 intergenic not near genes chr3L 21375986 intergenic not near genes chr3L 21379276 intergenic not near genes chr3L_42_21375001 chr3L_21375001 RAL-819 2503 chr3L 21406971 21407028 chr3L 21407075 21407132 40 102 18.5 20.0 19.2 2.0 161 chr3L 21406971 intron rgn + chr3L 21407052 intron rgn + chr3L 21407132 intron rgn + chr3L_40_21405001 chr3L_21405001 RAL-819 2504 chr3L 21414508 21414545 chr3L 21414609 21414646 23 100 13.5 18.0 15.8 1.4 138 chr3L 21414508 intron rgn + chr3L 21414577 intron rgn + chr3L 21414646 intron rgn + chr3L_23_21410001 chr3L_21410001 RAL-819 2505 chr3L 21437575 21437630 chr3L 21437707 21437757 38 131 8.5 10.5 9.5 3.6 182 chr3L 21437575 3` UTR Aef1 + chr3L 21437666 3` UTR Aef1 + chr3L 21437757 3` UTR Aef1 + chr3L_38_21435001 chr3L_21435001 RAL-819 2506 chr3L 4341330 4341335 chr3L 21448026 21448026 9 17106694 50.5 59.5 55.0 0.2 17106696 chr3L 4341330 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_9_12890001 chr3L_12890001 RAL-819 2507 chr3L 4341332 4341333 chr3L 21448027 21448027 5 17106694 49.5 59.5 54.5 0.1 17106695 chr3L 4341332 intron Cip4 - chr3L 12894680 3` UTR CG14118 + chr3L 21448027 3` UTR Syx7 + chr3L_5_12890001 chr3L_12890001 RAL-819 2508 chr3L 21498825 21498847 chr3L 21500486 21500508 1360 19 1658 16.5 18.5 17.5 1.0 1683 chr3L 21498825 5` UTR,intron CR43933 +,Glg1 - chr3L 21499666 intron Glg1 - chr3L 21500508 intron Glg1 - chr3L_19_21495001 chr3L_21495001 RAL-819 2509 chr3L 21498848 21498870 chr3L 21500469 21500507 1360 23 1655 9.5 13.5 11.5 1.8 1659 chr3L 21498848 intron Glg1 - chr3L 21499678 intron Glg1 - chr3L 21500507 intron Glg1 - chr3L_23_21495001 chr3L_21495001 RAL-819 2510 chr3L 21501147 21501165 chr3L 21501266 21501284 1360 13 119 19.0 25.0 22.0 0.6 137 chr3L 21501147 intron Glg1 - chr3L 21501216 intron Glg1 - chr3L 21501284 intron Glg1 - chr3L_13_21500001 chr3L_21500001 RAL-819 2511 chr3L 21509626 21509687 chr3L 21509728 21509789 51 100 11.5 14.0 12.8 3.7 163 chr3L 21509626 intron M6 + chr3L 21509708 intron M6 + chr3L 21509789 intron M6 + chr3L_51_21505001 chr3L_21505001 RAL-819 2512 chr3L 21588665 21588667 chr3L 26882297 26882299 Quasimodo 5 5293632 17.0 1.0 9.0 0.5 5293634 chr3L 21588665 intron TfAP-2 + chr3L 24235482 intron Snap25 + chr3L 26882299 intergenic not near genes chr3L_5_24235001 chr3L_24235001 RAL-819 2513 chr3L 21637299 21637312 chr3L 21637411 21637424 12 112 28.5 10.0 19.2 0.6 125 chr3L 21637299 exon CG32444 + chr3L 21637362 intron CG32444 + chr3L 21637424 intron CG32444 + chr3L_12_21635001 chr3L_21635001 RAL-819 2514 chr3L 21637314 21637348 chr3L 21637410 21637460 26 111 14.0 9.5 11.8 2.0 146 chr3L 21637314 intron CG32444 + chr3L 21637387 intron CG32444 + chr3L 21637460 intron CG32444 + chr3L_26_21635001 chr3L_21635001 RAL-819 2515 chr3L 21639173 21639225 chr3L 21639275 21639329 48 101 15.0 14.5 14.8 3.0 156 chr3L 21639173 intergenic CG32444 +,CG32445 + chr3L 21639251 intergenic CG32445 +,CG32444 + chr3L 21639329 intergenic CG32445 +,CG32444 + chr3L_48_21635001 chr3L_21635001 RAL-819 2516 chr3L 21649750 21649803 chr3L 21649999 21650052 46 248 7.5 10.0 8.8 4.7 302 chr3L 21649750 intron CG43980 + chr3L 21649901 intron CG43980 + chr3L 21650052 intron CG43980 + chr3L_46_21645001 chr3L_21645001 RAL-819 2517 chr3L 21671030 21671088 chr3L 21671203 21671261 41 171 8.0 13.0 10.5 3.6 231 chr3L 21671030 intergenic not near genes chr3L 21671146 intergenic not near genes chr3L 21671261 intergenic not near genes chr3L_41_21670001 chr3L_21670001 RAL-819 2518 chr3L 21736308 21736374 chr3L 21736549 21736600 18 220 0.5 14.0 7.2 2.2 292 chr3L 21736308 intergenic CR43888 + chr3L 21736454 intergenic CR43888 + chr3L 21736600 intergenic CR43888 + chr3L_18_21735001 chr3L_21735001 RAL-819 2519 chr3L 21749295 21749313 chr3L 21754480 21754498 Doc 8 5185 40.5 15.0 27.8 0.3 5203 chr3L 21749295 intron Syn1 - chr3L 21751896 intron Syn1 - chr3L 21754498 intron Syn1 - chr3L_8_21750001 chr3L_21750001 RAL-819 2520 chr3L 21749314 21749353 chr3L 21754478 21754482 Doc 33 5171 15.0 15.0 15.0 2.1 5168 chr3L 21749314 intron Syn1 - chr3L 21751898 intron Syn1 - chr3L 21754482 intron Syn1 - chr3L_33_21750001 chr3L_21750001 RAL-819 2521 chr3L 21758501 21758529 chr3L 21758875 21758901 19 373 111.0 56.0 83.5 0.2 400 chr3L 21758501 intron Syn1 - chr3L 21758701 intron Syn1 - chr3L 21758901 intron Syn1 - chr3L_19_21755001 chr3L_21755001 RAL-819 2522 chr3L 21769052 21769084 chr3L 21769153 21769196 25 111 0.0 16.0 8.0 2.8 144 chr3L 21769052 intron,intron Syn1 -,CG42689 + chr3L 21769124 intron,intron Syn1 -,CG42689 + chr3L 21769196 intron,intron Syn1 -,CG42689 + chr3L_25_21765001 chr3L_21765001 RAL-819 2523 chr3L 21770017 21770040 chr3L 21770128 21770152 15 110 19.0 16.5 17.8 0.8 135 chr3L 21770017 5` UTR,intron,5` UTR Syn1 -,CG42689 +,CG7370 + chr3L 21770084 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L 21770152 5` UTR,intron,intron Syn1 -,CG42689 +,CG7370 + chr3L_15_21770001 chr3L_21770001 RAL-819 2524 chr3L 21776663 21776872 chr3L 21776775 21776979 50 118 11.0 17.0 14.0 3.3 316 chr3L 21776663 intron,intron CG42689 +,CG42552 + chr3L 21776821 intron,intron CG42689 +,CG42552 + chr3L 21776979 exon,intron CG42689 +,CG42552 + chr3L_50_21775001 chr3L_21775001 RAL-819 2525 chr3L 21809956 21809971 chr3L 21810069 21810083 7 113 34.0 36.0 35.0 0.2 127 chr3L 21809956 intron eg + chr3L 21810020 intron eg + chr3L 21810083 intron eg + chr3L_7_21810001 chr3L_21810001 RAL-819 2526 chr3L 21836705 21836759 chr3L 21836816 21836870 37 110 10.0 12.0 11.0 3.1 165 chr3L 21836705 3` UTR P5CDh1 - chr3L 21836788 3` UTR P5CDh1 - chr3L 21836870 3` UTR P5CDh1 - chr3L_37_21835001 chr3L_21835001 RAL-819 2527 chr3L 21849475 21849532 chr3L 21849582 21849639 50 106 7.5 10.5 9.0 5.0 164 chr3L 21849475 intron mub + chr3L 21849557 intron mub + chr3L 21849639 intron mub + chr3L_50_21845001 chr3L_21845001 RAL-819 2528 chr3L 21852235 21852243 chr3L 21852352 21852361 4 116 23.5 10.5 17.0 0.2 126 chr3L 21852235 intron mub + chr3L 21852298 intron mub + chr3L 21852361 intron mub + chr3L_4_21850001 chr3L_21850001 RAL-819 2529 chr3L 21852248 21852284 chr3L 21852349 21852383 35 112 7.0 10.0 8.5 3.7 135 chr3L 21852248 intron mub + chr3L 21852316 intron mub + chr3L 21852383 intron mub + chr3L_35_21850001 chr3L_21850001 RAL-819 2530 chr3L 21874973 21875027 chr3L 21875154 21875209 42 182 9.0 6.5 7.8 4.8 236 chr3L 21874973 intron mub + chr3L 21875091 intron mub + chr3L 21875209 intron mub + chr3L_42_21875001 chr3L_21875001 RAL-819 2531 chr3L 21900999 21901045 chr3L 21901117 21901163 47 116 15.5 22.5 19.0 2.4 164 chr3L 21900999 intron mub + chr3L 21901081 intron mub + chr3L 21901163 intron mub + chr3L_47_21900001 chr3L_21900001 RAL-819 2532 chr3L 21952425 21952483 chr3L 21953193 21953251 transib1 39 766 10.0 16.0 13.0 2.8 826 chr3L 21952425 intergenic not near genes chr3L 21952838 intergenic not near genes chr3L 21953251 intergenic not near genes chr3L_39_21950001 chr3L_21950001 RAL-819 2533 chr3L 22016342 22016400 chr3L 22016483 22016541 32 137 10.5 13.0 11.8 2.5 199 chr3L 22016342 intergenic not near genes chr3L 22016442 intergenic not near genes chr3L 22016541 intergenic not near genes chr3L_32_22015001 chr3L_22015001 RAL-819 2534 chr3L 22033663 22033723 chr3L 22033766 22033826 46 102 11.5 12.0 11.8 3.6 163 chr3L 22033663 intergenic not near genes chr3L 22033744 intergenic not near genes chr3L 22033826 intergenic not near genes chr3L_46_22030001 chr3L_22030001 RAL-819 2535 chr3L 22046157 22046177 chr3L 22046285 22046305 17 127 32.5 14.5 23.5 0.7 148 chr3L 22046157 intron Oct-TyrR + chr3L 22046231 intron Oct-TyrR + chr3L 22046305 intron Oct-TyrR + chr3L_17_22045001 chr3L_22045001 RAL-819 2536 chr3L 22046181 22046213 chr3L 22046284 22046341 30 124 14.5 14.0 14.2 2.0 160 chr3L 22046181 intron Oct-TyrR + chr3L 22046261 intron Oct-TyrR + chr3L 22046341 intron Oct-TyrR + chr3L_30_22045001 chr3L_22045001 RAL-819 2537 chr3L 2321491 2321495 chr3L 22050842 22050844 5 19729349 1.0 51.0 26.0 0.2 19729353 chr3L 2321491 intergenic not near genes chr3L 12186168 exon CG6910 + chr3L 22050844 intron Oct-TyrR + chr3L_5_12185001 chr3L_12185001 RAL-819 2538 chr3L 22099656 22099677 chr3L 22105867 22105888 3S18 18 6210 28.5 13.5 21.0 0.8 6232 chr3L 22099656 intergenic not near genes chr3L 22102772 intergenic not near genes chr3L 22105888 intergenic not near genes chr3L_18_22100001 chr3L_22100001 RAL-819 2539 chr3L 22099678 22099702 chr3L 22105864 22105913 3S18 25 6208 14.0 13.5 13.8 1.7 6235 chr3L 22099678 intergenic not near genes chr3L 22102796 intergenic not near genes chr3L 22105913 intergenic not near genes chr3L_25_22100001 chr3L_22100001 RAL-819 2540 chr3L 22124786 22124840 chr3L 22124894 22124943 52 106 9.5 8.5 9.0 5.2 157 chr3L 22124786 intergenic not near genes chr3L 22124864 intergenic not near genes chr3L 22124943 intergenic not near genes chr3L_52_22120001 chr3L_22120001 RAL-819 2541 chr3L 22137500 22137555 chr3L 22137602 22137657 35 101 10.0 9.0 9.5 3.3 157 chr3L 22137500 intron olf413 + chr3L 22137578 intron olf413 + chr3L 22137657 intron olf413 + chr3L_35_22135001 chr3L_22135001 RAL-819 2542 chr3L 22166421 22166476 chr3L 22166524 22166551 40 100 13.0 11.0 12.0 3.1 130 chr3L 22166421 intron olf413 + chr3L 22166486 intron olf413 + chr3L 22166551 intron olf413 + chr3L_40_22165001 chr3L_22165001 RAL-819 2543 chr3L 22169429 22169487 chr3L 22169547 22169605 40 116 9.0 10.5 9.8 3.7 176 chr3L 22169429 intron olf413 + chr3L 22169517 intron olf413 + chr3L 22169605 intron olf413 + chr3L_40_22165001 chr3L_22165001 RAL-819 2544 chr3L 22179083 22179109 chr3L 22179182 22179200 17 97 12.0 13.0 12.5 1.3 117 chr3L 22179083 intron olf413 + chr3L 22179142 intron olf413 + chr3L 22179200 intron olf413 + chr3L_17_22175001 chr3L_22175001 RAL-819 2545 chr3L 22179110 22179115 chr3L 22179179 22179185 7 92 10.0 11.5 10.8 0.6 75 chr3L 22179110 intron olf413 + chr3L 22179148 intron olf413 + chr3L 22179185 intron olf413 + chr3L_7_22175001 chr3L_22175001 RAL-819 2546 chr3L 22194304 22194318 chr3L 22194406 22194420 10 101 19.0 40.0 29.5 0.3 116 chr3L 22194304 intron olf413 + chr3L 22194362 intron olf413 + chr3L 22194420 intron olf413 + chr3L_10_22190001 chr3L_22190001 RAL-819 2547 chr3L 22411360 22411398 chr3L 22411447 22411500 34 88 7.0 9.5 8.2 3.7 140 chr3L 22411360 intergenic not near genes chr3L 22411430 intergenic not near genes chr3L 22411500 intergenic not near genes chr3L_34_22410001 chr3L_22410001 RAL-819 2548 chr3L 22447175 22447178 chr3L 22447291 22447294 4 116 32.5 16.0 24.2 0.2 119 chr3L 22447175 intergenic not near genes chr3L 22447234 intergenic not near genes chr3L 22447294 intergenic not near genes chr3L_4_22445001 chr3L_22445001 RAL-819 2549 chr3L 22447179 22447232 chr3L 22447289 22447348 36 114 11.0 15.0 13.0 2.6 169 chr3L 22447179 intergenic not near genes chr3L 22447264 intergenic not near genes chr3L 22447348 intergenic not near genes chr3L_36_22445001 chr3L_22445001 RAL-819 2550 chr3L 22543054 22543102 chr3L 22543156 22543204 32 102 10.5 11.5 11.0 2.7 150 chr3L 22543054 intergenic not near genes chr3L 22543129 intergenic not near genes chr3L 22543204 intergenic not near genes chr3L_32_22540001 chr3L_22540001 RAL-819 2551 chr3L 22554397 22554454 chr3L 22554498 22554555 46 99 15.5 11.5 13.5 3.2 158 chr3L 22554397 intergenic not near genes chr3L 22554476 intergenic not near genes chr3L 22554555 intergenic not near genes chr3L_46_22550001 chr3L_22550001 RAL-819 2552 chr3L 22555745 22555754 chr3L 22563240 22563249 blood 7 7494 32.5 8.5 20.5 0.3 7504 chr3L 22555745 intergenic not near genes chr3L 22559497 intergenic not near genes chr3L 22563249 intergenic not near genes chr3L_7_22555001 chr3L_22555001 RAL-819 2553 chr3L 22555759 22555803 chr3L 22563239 22563292 blood 46 7489 10.0 8.5 9.2 4.5 7533 chr3L 22555759 intergenic not near genes chr3L 22559526 intergenic not near genes chr3L 22563292 intergenic not near genes chr3L_46_22555001 chr3L_22555001 RAL-819 2554 chr3L 22569552 22569602 chr3L 22569675 22569724 38 119 10.0 12.5 11.2 3.1 172 chr3L 22569552 intergenic not near genes chr3L 22569638 intergenic not near genes chr3L 22569724 intergenic not near genes chr3L_38_22565001 chr3L_22565001 RAL-819 2555 chr3L 22577606 22577648 chr3L 22582410 22582451 Doc 37 4808 11.0 17.0 14.0 2.5 4845 chr3L 22577606 intergenic not near genes chr3L 22580028 intergenic not near genes chr3L 22582451 3` UTR CG14459 - chr3L_37_22580001 chr3L_22580001 RAL-819 2556 chr3L 22617166 22617222 chr3L 22624643 22624698 blood 52 7470 9.5 20.0 14.8 3.3 7532 chr3L 22617166 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624698 intron CG14459 - chr3L_52_22620001 chr3L_22620001 RAL-819 2557 chr3L 22732442 22732446 chr3L 22732548 22732552 4 106 29.5 15.5 22.5 0.2 110 chr3L 22732442 intron CG11367 + chr3L 22732497 intron CG11367 + chr3L 22732552 intron CG11367 + chr3L_4_22730001 chr3L_22730001 RAL-819 2558 chr3L 22732448 22732479 chr3L 22732547 22732565 21 104 16.0 15.5 15.8 1.2 117 chr3L 22732448 intron CG11367 + chr3L 22732506 intron CG11367 + chr3L 22732565 intron CG11367 + chr3L_21_22730001 chr3L_22730001 RAL-819 2559 chr3L 22732480 22732495 chr3L 22732545 22732601 16 100 13.0 14.5 13.8 1.1 121 chr3L 22732480 intron CG11367 + chr3L 22732540 intron CG11367 + chr3L 22732601 exon CG11367 + chr3L_16_22730001 chr3L_22730001 RAL-819 2560 chr3L 17715160 17715162 chr3L 22733618 22733620 4 5018458 21.5 46.5 34.0 0.1 5018460 chr3L 17715160 intron Ccn + chr3L 20224390 exon CG17147 + chr3L 22733620 intron CG11241 - chr3L_4_20220001 chr3L_20220001 RAL-819 2561 chr3L 22756375 22756426 chr3L 22756477 22756528 42 97 18.0 17.0 17.5 2.3 153 chr3L 22756375 intron SPoCk + chr3L 22756452 intron SPoCk + chr3L 22756528 intron SPoCk + chr3L_42_22755001 chr3L_22755001 RAL-819 2562 chr3L 22761364 22761399 chr3L 22766823 22766858 Ivk 32 5458 21.0 19.0 20.0 1.5 5494 chr3L 22761364 intron SPoCk + chr3L 22764111 intron SPoCk + chr3L 22766858 intron SPoCk + chr3L_32_22760001 chr3L_22760001 RAL-819 2563 chr3L 22761403 22761418 chr3L 22766821 22766877 Ivk 11 5453 12.5 18.5 15.5 0.7 5474 chr3L 22761403 intron SPoCk + chr3L 22764140 intron SPoCk + chr3L 22766877 intron SPoCk + chr3L_11_22760001 chr3L_22760001 RAL-819 2564 chr3L 22771623 22771666 chr3L 22771715 22771769 37 91 14.5 8.5 11.5 3.0 146 chr3L 22771623 intron SPoCk + chr3L 22771696 intron SPoCk + chr3L 22771769 intron SPoCk + chr3L_37_22770001 chr3L_22770001 RAL-819 2565 chr3L 22853666 22853722 chr3L 22853777 22853833 39 110 11.0 8.5 9.8 3.6 167 chr3L 22853666 5` UTR CR43426 + chr3L 22853750 5` UTR CR43426 + chr3L 22853833 5` UTR CR43426 + chr3L_39_22850001 chr3L_22850001 RAL-819 2566 chr3L 22865962 22866008 chr3L 22867120 22867166 Doc 32 1158 19.5 16.5 18.0 1.7 1204 chr3L 22865962 intron CG33170 + chr3L 22866564 intron CG33170 + chr3L 22867166 intron CG33170 + chr3L_32_22865001 chr3L_22865001 RAL-819 2567 chr3L 22897176 22897199 chr3L 22897284 22897307 29 106 13.5 19.5 16.5 1.7 131 chr3L 22897176 intergenic not near genes chr3L 22897242 intergenic not near genes chr3L 22897307 intergenic not near genes chr3L_29_22895001 chr3L_22895001 RAL-819 2568 chr3L 22897200 22897225 chr3L 22897282 22897333 28 104 13.0 19.0 16.0 1.6 133 chr3L 22897200 intergenic not near genes chr3L 22897266 intergenic not near genes chr3L 22897333 intergenic not near genes chr3L_28_22895001 chr3L_22895001 RAL-819 2569 chr3L 9307795 9307796 chr3L 22908066 22908066 6 13600270 49.0 61.0 55.0 0.1 13600271 chr3L 9307795 intergenic not near genes chr3L 16107930 intron Zn72D - chr3L 22908066 intergenic not near genes chr3L_6_16105001 chr3L_16105001 RAL-819 2570 chr3L 19220633 19220637 chr3L 22908066 22908066 37 3687432 72.0 61.0 66.5 0.5 3687433 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908066 intergenic not near genes chr3L_37_21060001 chr3L_21060001 RAL-819 2571 chr3L 20525228 20525230 chr3L 22908066 22908066 13 2382837 43.0 61.0 52.0 0.2 2382838 chr3L 20525228 intron CG4825 - chr3L 21716647 intergenic not near genes chr3L 22908066 intergenic not near genes chr3L_13_21715001 chr3L_21715001 RAL-819 2572 chr3L 22908066 22908066 chr3L 24821492 24821494 14 1913428 57.0 39.0 48.0 0.3 1913428 chr3L 22908066 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_14_23860001 chr3L_23860001 RAL-819 2573 chr3L 9102753 9102805 chr3L 22908067 22908067 5 13805291 63.5 60.0 61.8 0.1 13805314 chr3L 9102753 exon bol - chr3L 16005410 exon mRpS31 + chr3L 22908067 intergenic not near genes chr3L_5_16005001 chr3L_16005001 RAL-819 2574 chr3L 19220633 19220637 chr3L 22908067 22908067 9 3687432 72.0 60.0 66.0 0.1 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_9_21060001 chr3L_21060001 RAL-819 2575 chr3L 20525228 20525230 chr3L 22908067 22908067 14 2382837 43.0 60.0 51.5 0.3 2382839 chr3L 20525228 intron CG4825 - chr3L 21716648 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_14_21715001 chr3L_21715001 RAL-819 2576 chr3L 22908067 22908067 chr3L 24821494 24821494 7 1913427 57.0 40.0 48.5 0.1 1913427 chr3L 22908067 intergenic not near genes chr3L 23864780 intron CG40470 - chr3L 24821494 intergenic not near genes chr3L_7_23860001 chr3L_23860001 RAL-819 2577 chr3L 22918928 22918933 chr3L 22919040 22919045 4 112 15.0 43.5 29.2 0.1 117 chr3L 22918928 intron CG12768 + chr3L 22918986 intron CG12768 + chr3L 22919045 intron CG12768 + chr3L_4_22915001 chr3L_22915001 RAL-819 2578 chr3L 22918937 22918942 chr3L 22919034 22919038 5 101 12.5 41.5 27.0 0.2 101 chr3L 22918937 intron CG12768 + chr3L 22918988 intron CG12768 + chr3L 22919038 intron CG12768 + chr3L_5_22915001 chr3L_22915001 RAL-819 2579 chr3L 22989845 22989852 chr3L 22996838 22996851 297 5 6998 27.0 14.0 20.5 0.2 7006 chr3L 22989845 intergenic not near genes chr3L 22993348 intergenic not near genes chr3L 22996851 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-819 2580 chr3L 22989853 22989891 chr3L 22996835 22996890 297 36 6996 10.0 13.0 11.5 2.9 7037 chr3L 22989853 intergenic not near genes chr3L 22993372 intergenic not near genes chr3L 22996890 intergenic not near genes chr3L_36_22990001 chr3L_22990001 RAL-819 2581 chr3L 23042205 23042256 chr3L 23048978 23049019 gypsy6 32 6775 11.5 9.0 10.2 2.9 6814 chr3L 23042205 intergenic not near genes chr3L 23045612 intergenic not near genes chr3L 23049019 intergenic not near genes chr3L_32_23045001 chr3L_23045001 RAL-819 2582 chr3L 23088270 23088311 chr3L 23088368 23088374 32 99 6.5 8.0 7.2 3.9 104 chr3L 23088270 intergenic not near genes chr3L 23088322 intergenic not near genes chr3L 23088374 intergenic not near genes chr3L_32_23085001 chr3L_23085001 RAL-819 2583 chr3L 23125996 23126053 chr3L 23126119 23126176 29 120 9.5 5.0 7.2 3.5 180 chr3L 23125996 intergenic CG33217 + chr3L 23126086 5` UTR CG33217 + chr3L 23126176 intron CG33217 + chr3L_29_23125001 chr3L_23125001 RAL-819 2584 chr3L 23165889 23165908 chr3L 23173358 23173377 Quasimodo 8 7469 26.0 10.5 18.2 0.4 7488 chr3L 23165889 intergenic not near genes chr3L 23169633 intergenic not near genes chr3L 23173377 intergenic not near genes chr3L_8_23165001 chr3L_23165001 RAL-819 2585 chr3L 23182244 23182295 chr3L 23182375 23182434 31 133 13.0 11.5 12.2 2.3 190 chr3L 23182244 intron CG34031 + chr3L 23182339 intron CG34031 + chr3L 23182434 intron CG34031 + chr3L_31_23180001 chr3L_23180001 RAL-819 2586 chr3L 23468116 23468123 chr3L 23481580 23481580 springer 5 13462 70.5 68.0 69.2 0.1 13464 chr3L 23468116 intergenic not near genes chr3L 23474848 intergenic not near genes chr3L 23481580 intergenic not near genes chr3L_5_23470001 chr3L_23470001 RAL-819 2587 chr3L 23468009 23468029 chr3L 23468161 23468171 11 145 84.0 64.5 74.2 0.1 162 chr3L 23468009 intergenic not near genes chr3L 23468090 intergenic not near genes chr3L 23468171 intergenic not near genes chr3L_11_23465001 chr3L_23465001 RAL-819 2588 chr3L 23665510 23665528 chr3L 23665625 23665643 gypsy8 17 114 72.0 71.5 71.8 0.2 133 chr3L 23665510 intron AGO3 + chr3L 23665576 intron AGO3 + chr3L 23665643 intron AGO3 + chr3L_17_23665001 chr3L_23665001 RAL-819 2589 chr3L 23875504 23875527 chr3L 23875610 23875633 22 103 21.0 12.0 16.5 1.3 129 chr3L 23875504 intron CG40470 - chr3L 23875568 intron CG40470 - chr3L 23875633 intron CG40470 - chr3L_22_23875001 chr3L_23875001 RAL-819 2590 chr3L 23875528 23875558 chr3L 23875609 23875639 22 98 10.0 11.5 10.8 1.9 111 chr3L 23875528 intron CG40470 - chr3L 23875584 intron CG40470 - chr3L 23875639 intron CG40470 - chr3L_22_23875001 chr3L_23875001 RAL-819 2591 chr3L 24012394 24012432 chr3L 24020754 24020798 roo 31 8365 12.5 13.5 13.0 2.2 8404 chr3L 24012394 intergenic not near genes chr3L 24016596 intergenic not near genes chr3L 24020798 intergenic not near genes chr3L_31_24015001 chr3L_24015001 RAL-819 2592 chr3L 24168621 24168628 chr3L 24176391 24176398 ZAM 5 7776 24.5 13.0 18.8 0.3 7777 chr3L 24168621 intron Snap25 + chr3L 24172510 intron Snap25 + chr3L 24176398 intron Snap25 + chr3L_5_24170001 chr3L_24170001 RAL-819 2593 chr3L 24168629 24168640 chr3L 24176389 24176391 ZAM 14 7769 17.5 12.0 14.8 0.9 7762 chr3L 24168629 intron Snap25 + chr3L 24172510 intron Snap25 + chr3L 24176391 intron Snap25 + chr3L_14_24170001 chr3L_24170001 RAL-819 2594 chr3L 24290475 24290518 chr3L 24290837 24290889 35 361 12.5 9.5 11.0 2.9 414 chr3L 24290475 intron,3` UTR Snap25 +,CR45159 - chr3L 24290682 intron,3` UTR Snap25 +,CR45159 - chr3L 24290889 intron Snap25 + chr3L_35_24290001 chr3L_24290001 RAL-819 2595 chr3L 24791870 24791921 chr3L 24796674 24796715 Doc 17 4801 8.5 8.0 8.2 1.8 4845 chr3L 24791870 intergenic not near genes chr3L 24794292 intergenic not near genes chr3L 24796715 intergenic not near genes chr3L_17_24790001 chr3L_24790001 RAL-819 2596 chr3L 24809776 24809786 chr3L 24810200 24810210 8 424 81.0 106.5 93.8 0.1 434 chr3L 24809776 intergenic not near genes chr3L 24809993 intergenic not near genes chr3L 24810210 intergenic not near genes chr3L_8_24805001 chr3L_24805001 RAL-819 2597 chr3L 20525228 20525230 chr3L 24821492 24821492 6 4296262 43.0 39.0 41.0 0.1 4296264 chr3L 20525228 intron CG4825 - chr3L 22673360 intron CG14457 + chr3L 24821492 intergenic not near genes chr3L_6_22670001 chr3L_22670001 RAL-819 2598 chr3L 18198930 18198931 chr3L 24821493 24821493 6 6622562 46.0 39.0 42.5 0.1 6622563 chr3L 18198930 intergenic not near genes chr3L 21510212 intron M6 + chr3L 24821493 intergenic not near genes chr3L_6_21510001 chr3L_21510001 RAL-819 2599 chr3L 25061769 25061781 chr3L 25061882 25061889 4 111 16.0 18.0 17.0 0.2 120 chr3L 25061769 intergenic not near genes chr3L 25061829 intergenic not near genes chr3L 25061889 intergenic not near genes chr3L_4_25060001 chr3L_25060001 RAL-819 2600 chr3L 25331611 25331652 chr3L 25331727 25331760 24 110 13.0 10.0 11.5 1.9 149 chr3L 25331611 intergenic not near genes chr3L 25331686 intergenic not near genes chr3L 25331760 intergenic not near genes chr3L_24_25330001 chr3L_25330001 RAL-819 2601 chr3L 25334696 25334745 chr3L 25334804 25334853 16 107 4.5 7.0 5.8 2.4 157 chr3L 25334696 intergenic not near genes chr3L 25334774 intergenic not near genes chr3L 25334853 intergenic not near genes chr3L_16_25330001 chr3L_25330001 RAL-819 2602 chr3L 25464005 25464015 chr3L 25464111 25464117 9 105 13.5 9.0 11.2 0.7 112 chr3L 25464005 intergenic not near genes chr3L 25464061 intergenic not near genes chr3L 25464117 intergenic not near genes chr3L_9_25460001 chr3L_25460001 RAL-819 2603 chr3L 25464016 25464053 chr3L 25464107 25464154 36 98 3.5 9.0 6.2 5.0 138 chr3L 25464016 intergenic not near genes chr3L 25464085 intergenic not near genes chr3L 25464154 intergenic not near genes chr3L_36_25460001 chr3L_25460001 RAL-819 2604 chr3L 25512788 25512809 chr3L 25512867 25512887 11 97 3.5 13.5 8.5 1.2 99 chr3L 25512788 intron CG41343 - chr3L 25512838 intron CG41343 - chr3L 25512887 intron CG41343 - chr3L_11_25510001 chr3L_25510001 RAL-819 2605 chr3L 25513554 25513609 chr3L 25513658 25513713 28 102 13.5 11.5 12.5 2.1 159 chr3L 25513554 intron CG41343 - chr3L 25513634 intron CG41343 - chr3L 25513713 intron CG41343 - chr3L_28_25510001 chr3L_25510001 RAL-819 2606 chr3L 25627819 25627828 chr3L 25627930 25627939 8 111 11.5 28.0 19.8 0.4 120 chr3L 25627819 intron CG41343 - chr3L 25627879 intron CG41343 - chr3L 25627939 intron CG41343 - chr3L_8_25625001 chr3L_25625001 RAL-819 2607 chr3L 25628499 25628500 chr3L 25633265 25633276 F-element 7 4780 17.0 7.5 12.2 0.5 4777 chr3L 25628499 intron CG41343 - chr3L 25630888 intron CG41343 - chr3L 25633276 intron CG41343 - chr3L_7_25630001 chr3L_25630001 RAL-819 2608 chr3L 25628502 25628529 chr3L 25633263 25633291 F-element 9 4780 9.0 6.5 7.8 1.0 4789 chr3L 25628502 intron CG41343 - chr3L 25630896 intron CG41343 - chr3L 25633291 intron CG41343 - chr3L_9_25630001 chr3L_25630001 RAL-819 2609 chr3L 25842481 25842501 chr3L 25842577 25842612 14 107 7.0 17.0 12.0 1.1 131 chr3L 25842481 intron CG40178 - chr3L 25842546 intron CG40178 - chr3L 25842612 intron CG40178 - chr3L_14_25840001 chr3L_25840001 RAL-819 2610 chr3L 26009402 26009451 chr3L 26009518 26009557 11 110 9.5 5.5 7.5 1.3 155 chr3L 26009402 intron CG40178 - chr3L 26009480 intron CG40178 - chr3L 26009557 intron CG40178 - chr3L_11_26005001 chr3L_26005001 RAL-819 2611 chr3L 26026698 26026712 chr3L 26026812 26026823 8 111 63.0 58.0 60.5 0.1 125 chr3L 26026698 intergenic not near genes chr3L 26026760 intergenic not near genes chr3L 26026823 intergenic not near genes chr3L_8_26025001 chr3L_26025001 RAL-819 2612 chr3L 26026751 26026755 chr3L 26026811 26026865 4 100 61.5 57.5 59.5 0.1 114 chr3L 26026751 intergenic not near genes chr3L 26026808 intergenic not near genes chr3L 26026865 intergenic not near genes chr3L_4_26025001 chr3L_26025001 RAL-819 2613 chr3L 26694910 26694958 chr3L 26695009 26695011 30 92 9.5 10.5 10.0 2.7 101 chr3L 26694910 intergenic not near genes chr3L 26694960 intergenic not near genes chr3L 26695011 intergenic not near genes chr3L_30_26690001 chr3L_26690001 RAL-819 2614 chr3L 23941245 23941246 chr3L 26882297 26882300 1360 4 2941054 45.0 1.0 23.0 0.2 2941055 chr3L 23941245 intron CG40470 - chr3L 25411772 intergenic not near genes chr3L 26882300 intergenic not near genes chr3L_4_25410001 chr3L_25410001 RAL-819 2615 chr3L 27356090 27356108 chr3L 27357314 27357332 1360 6 1224 19.5 8.5 14.0 0.4 1242 chr3L 27356090 intron Dbp80 + chr3L 27356711 intron Dbp80 + chr3L 27357332 intron Dbp80 + chr3L_6_27355001 chr3L_27355001 RAL-819 2616 chr3L 27368856 27368902 chr3L 27369426 27369467 28 569 13.5 14.0 13.8 1.9 611 chr3L 27368856 intron Dbp80 + chr3L 27369162 intron Dbp80 + chr3L 27369467 intron Dbp80 + chr3L_28_27365001 chr3L_27365001 RAL-819 2617 chr3L 27727616 27727661 chr3L 27728748 27728792 G-element 18 1124 9.0 21.0 15.0 1.1 1176 chr3L 27727616 intergenic not near genes chr3L 27728204 intergenic not near genes chr3L 27728792 intergenic not near genes chr3L_18_27725001 chr3L_27725001 RAL-819 2618 chr3L 27980673 27980730 chr3L 27985494 27985553 Doc 24 4821 7.5 12.5 10.0 2.2 4880 chr3L 27980673 intron CG17514 - chr3L 27983113 intron CG17514 - chr3L 27985553 intron CG17514 - chr3L_24_27980001 chr3L_27980001 RAL-819 2619 chr3R 98954 98955 chr3R 109521 109522 5 10567 0.0 9.5 4.8 0.9 10568 chr3R 98954 intergenic not near genes chr3R 104238 intergenic not near genes chr3R 109522 intergenic not near genes chr3R_5_100001 chr3R_100001 RAL-819 2620 chr3R 97106 97107 chr3R 98956 98957 1360 6 1850 23.0 0.0 11.5 0.5 1851 chr3R 97106 intergenic not near genes chr3R 98032 intergenic not near genes chr3R 98957 intergenic not near genes chr3R_6_95001 chr3R_95001 RAL-819 2621 chr3R 758845 758894 chr3R 758975 759009 9 115 7.5 5.0 6.2 1.2 164 chr3R 758845 intergenic not near genes chr3R 758927 intergenic not near genes chr3R 759009 intergenic not near genes chr3R_9_755001 chr3R_755001 RAL-819 2622 chr3R 1062362 1062411 chr3R 1062545 1062594 19 182 6.5 7.0 6.8 2.4 232 chr3R 1062362 intron CG15831 + chr3R 1062478 intron CG15831 + chr3R 1062594 intron CG15831 + chr3R_19_1060001 chr3R_1060001 RAL-819 2623 chr3R 1252448 1252470 chr3R 1252570 1252570 6 112 61.5 58.5 60.0 0.1 122 chr3R 1252448 intergenic not near genes chr3R 1252509 intergenic not near genes chr3R 1252570 intergenic not near genes chr3R_6_1250001 chr3R_1250001 RAL-819 2624 chr3R 1252422 1252447 chr3R 1266230 1266233 297 5 13792 57.5 29.5 43.5 0.1 13811 chr3R 1252422 intergenic not near genes chr3R 1259328 intergenic not near genes chr3R 1266233 intergenic not near genes chr3R_5_1255001 chr3R_1255001 RAL-819 2625 chr3R 1443411 1443457 chr3R 1443509 1443562 11 100 4.0 5.0 4.5 2.0 151 chr3R 1443411 intron CG40155 + chr3R 1443486 intron CG40155 + chr3R 1443562 intron CG40155 + chr3R_11_1440001 chr3R_1440001 RAL-819 2626 chr3R 1451444 1451445 chr3R 1455017 1455042 Max-element 8 3578 57.5 40.5 49.0 0.2 3598 chr3R 1451444 intron CG40155 + chr3R 1453243 intron CG40155 + chr3R 1455042 exon CG40155 + chr3R_8_1450001 chr3R_1450001 RAL-819 2627 chr3R 1680278 1680289 chr3R 1680382 1680404 9 110 9.0 15.0 12.0 0.7 126 chr3R 1680278 intergenic not near genes chr3R 1680341 intergenic not near genes chr3R 1680404 intergenic not near genes chr3R_9_1680001 chr3R_1680001 RAL-819 2628 chr3R 1850860 1850904 chr3R 1853512 1853556 INE-1 19 2648 5.0 6.5 5.8 2.8 2696 chr3R 1850860 intron CG42623 + chr3R 1852208 intron CG42623 + chr3R 1853556 intron CG42623 + chr3R_19_1850001 chr3R_1850001 RAL-819 2629 chr3R 1867060 1867068 chr3R 1867168 1867173 6 107 49.5 44.0 46.8 0.1 113 chr3R 1867060 intron CG42623 + chr3R 1867116 intron CG42623 + chr3R 1867173 intron CG42623 + chr3R_6_1865001 chr3R_1865001 RAL-819 2630 chr3R 1867170 1867172 chr3R 1954898 1954933 Doc3-element 4 87738 42.0 19.5 30.8 0.1 87763 chr3R 1867170 intron CG42623 + chr3R 1911052 intron CG42623 + chr3R 1954933 intergenic not near genes chr3R_4_1910001 chr3R_1910001 RAL-819 2631 chr3R 1939026 1939082 chr3R 1939145 1939201 17 117 3.0 4.0 3.5 3.8 175 chr3R 1939026 intergenic not near genes chr3R 1939114 intergenic not near genes chr3R 1939201 intergenic not near genes chr3R_17_1935001 chr3R_1935001 RAL-819 2632 chr3R 1511855 1511860 chr3R 2516749 2516754 297 5 1004894 32.0 62.0 47.0 0.1 1004899 chr3R 1511855 intergenic not near genes chr3R 2014304 intergenic not near genes chr3R 2516754 intergenic not near genes chr3R_5_2010001 chr3R_2010001 RAL-819 2633 chr3R 2534118 2534120 chr3R 2541708 2541714 4 7593 68.5 53.5 61.0 0.1 7596 chr3R 2534118 intergenic not near genes chr3R 2537916 intergenic not near genes chr3R 2541714 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-819 2634 chr3R 2534123 2534152 chr3R 2541707 2541740 19 7587 53.5 53.5 53.5 0.3 7617 chr3R 2534123 intergenic not near genes chr3R 2537932 intergenic not near genes chr3R 2541740 intergenic not near genes chr3R_19_2535001 chr3R_2535001 RAL-819 2635 chr3R 2534153 2534163 chr3R 2541700 2541722 12 7572 42.0 56.5 49.2 0.2 7569 chr3R 2534153 intergenic not near genes chr3R 2537938 intergenic not near genes chr3R 2541722 intergenic not near genes chr3R_12_2535001 chr3R_2535001 RAL-819 2636 chr3R 2859826 2859849 chr3R 2859957 2859983 17 131 15.5 8.0 11.8 1.3 157 chr3R 2859826 intergenic not near genes chr3R 2859904 intergenic not near genes chr3R 2859983 intergenic not near genes chr3R_17_2855001 chr3R_2855001 RAL-819 2637 chr3R 3019579 3019624 chr3R 3019779 3019824 18 197 22.0 23.0 22.5 0.8 245 chr3R 3019579 intron CG42618 - chr3R 3019702 intron CG42618 - chr3R 3019824 intron CG42618 - chr3R_18_3015001 chr3R_3015001 RAL-819 2638 chr3R 3580981 3581023 chr3R 3581233 3581275 18 251 6.0 1.5 3.8 3.8 294 chr3R 3580981 intron Parp - chr3R 3581128 intron Parp - chr3R 3581275 intron Parp - chr3R_18_3580001 chr3R_3580001 RAL-819 2639 chr3R 3877445 3877503 chr3R 3877611 3877654 64 161 7.0 10.0 8.5 6.7 209 chr3R 3877445 intergenic not near genes chr3R 3877550 intergenic not near genes chr3R 3877654 intergenic not near genes chr3R_64_3875001 chr3R_3875001 RAL-819 2640 chr3R 4063789 4063805 chr3R 4069094 4069110 5 5305 12.0 17.0 14.5 0.3 5321 chr3R 4063789 intergenic not near genes chr3R 4066450 intergenic not near genes chr3R 4069110 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-819 2641 chr3R 3989295 3989305 chr3R 4068939 4068949 mdg1 9 79644 42.5 16.5 29.5 0.3 79654 chr3R 3989295 intergenic not near genes chr3R 4029122 intergenic not near genes chr3R 4068949 intergenic not near genes chr3R_9_4025001 chr3R_4025001 RAL-819 2642 chr3R 4105016 4105059 chr3R 4110245 4110263 copia 10 5225 7.5 4.0 5.8 1.5 5247 chr3R 4105016 intergenic not near genes chr3R 4107640 intergenic not near genes chr3R 4110263 intergenic not near genes chr3R_10_4105001 chr3R_4105001 RAL-819 2643 chr3R 4206045 4206101 chr3R 4211645 4211701 mdg3 43 5599 9.5 7.5 8.5 4.5 5656 chr3R 4206045 intron CG14636 - chr3R 4208873 intron CG14636 - chr3R 4211701 intron CG14636 - chr3R_43_4205001 chr3R_4205001 RAL-819 2644 chr3R 4241040 4241095 chr3R 4241138 4241198 48 101 17.0 18.0 17.5 2.6 158 chr3R 4241040 3` UTR Gel + chr3R 4241119 3` UTR CG14642 - chr3R 4241198 intron CG14642 - chr3R_48_4240001 chr3R_4240001 RAL-819 2645 chr3R 4366734 4366788 chr3R 4375142 4375196 roo 29 8407 10.5 10.5 10.5 2.5 8462 chr3R 4366734 3` UTR CG1090 + chr3R 4370965 intergenic not near genes chr3R 4375196 5` UTR CR44922 + chr3R_29_4370001 chr3R_4370001 RAL-819 2646 chr3R 4408387 4408440 chr3R 4412716 4412723 Juan 40 4324 21.0 13.0 17.0 2.2 4336 chr3R 4408387 intron CG32944 - chr3R 4410555 intron CG32944 - chr3R 4412723 intron CG32944 - chr3R_40_4410001 chr3R_4410001 RAL-819 2647 chr3R 4512380 4512386 chr3R 4512616 4512618 6 235 17.5 0.0 8.8 0.6 238 chr3R 4512380 intron CG34357 - chr3R 4512499 intron CG34357 - chr3R 4512618 intron CG34357 - chr3R_6_4510001 chr3R_4510001 RAL-819 2648 chr3R 4593452 4593487 chr3R 4593554 4593576 18 104 14.5 11.0 12.8 1.3 124 chr3R 4593452 intergenic not near genes chr3R 4593514 intergenic not near genes chr3R 4593576 intergenic not near genes chr3R_18_4590001 chr3R_4590001 RAL-819 2649 chr3R 4609524 4609578 chr3R 4610713 4610767 1360 42 1188 13.5 15.5 14.5 2.7 1243 chr3R 4609524 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610767 intergenic not near genes chr3R_42_4610001 chr3R_4610001 RAL-819 2650 chr3R 4636574 4636622 chr3R 4637019 4637067 INE-1 25 444 10.5 8.0 9.2 2.5 493 chr3R 4636574 intergenic not near genes chr3R 4636820 intergenic not near genes chr3R 4637067 intergenic not near genes chr3R_25_4635001 chr3R_4635001 RAL-819 2651 chr3R 4657806 4657819 chr3R 4657923 4657936 5 117 16.5 13.0 14.8 0.3 130 chr3R 4657806 exon spartin + chr3R 4657871 3` UTR spartin + chr3R 4657936 3` UTR spartin + chr3R_5_4655001 chr3R_4655001 RAL-819 2652 chr3R 4678444 4678490 chr3R 4678820 4678835 25 371 5.0 6.5 5.8 3.7 391 chr3R 4678444 intron CG43427 + chr3R 4678640 intron CG43427 + chr3R 4678835 intron CG43427 + chr3R_25_4675001 chr3R_4675001 RAL-819 2653 chr3R 4753222 4753246 chr3R 4757550 4757574 F-element 22 4327 24.0 21.0 22.5 0.9 4352 chr3R 4753222 intron,intron atms +,CG44098 - chr3R 4755398 intron,intron atms +,CG44098 - chr3R 4757574 intron,exon atms +,CG44098 - chr3R_22_4755001 chr3R_4755001 RAL-819 2654 chr3R 4753247 4753255 chr3R 4757548 4757583 F-element 12 4324 19.5 19.5 19.5 0.6 4336 chr3R 4753247 intron,intron atms +,CG44098 - chr3R 4755415 intron,intron atms +,CG44098 - chr3R 4757583 intron,exon atms +,CG44098 - chr3R_12_4755001 chr3R_4755001 RAL-819 2655 chr3R 4753257 4753262 chr3R 4757540 4757590 F-element 8 4320 16.5 16.0 16.2 0.5 4333 chr3R 4753257 intron,intron atms +,CG44098 - chr3R 4755424 intron,intron atms +,CG44098 - chr3R 4757590 intron,exon atms +,CG44098 - chr3R_8_4755001 chr3R_4755001 RAL-819 2656 chr3R 4759701 4759739 chr3R 4761223 4761261 hopper2 32 1520 19.0 17.0 18.0 1.7 1560 chr3R 4759701 intron,intron atms +,CG44098 - chr3R 4760481 intron,intron atms +,CG44098 - chr3R 4761261 intron,intron atms +,CG44098 - chr3R_32_4760001 chr3R_4760001 RAL-819 2657 chr3R 4759740 4759755 chr3R 4761222 4761224 hopper2 7 1504 13.5 17.0 15.2 0.4 1484 chr3R 4759740 intron,intron atms +,CG44098 - chr3R 4760482 intron,intron atms +,CG44098 - chr3R 4761224 intron,intron atms +,CG44098 - chr3R_7_4760001 chr3R_4760001 RAL-819 2658 chr3R 4769134 4769152 chr3R 4769237 4769249 9 102 25.0 11.0 18.0 0.5 115 chr3R 4769134 intron,intron atms +,CG44098 - chr3R 4769192 intron,intron atms +,CG44098 - chr3R 4769249 intron,intron atms +,CG44098 - chr3R_9_4765001 chr3R_4765001 RAL-819 2659 chr3R 4769153 4769190 chr3R 4769236 4769293 36 101 12.0 10.0 11.0 3.0 140 chr3R 4769153 intron,intron atms +,CG44098 - chr3R 4769223 intron,intron atms +,CG44098 - chr3R 4769293 intron,intron atms +,CG44098 - chr3R_36_4765001 chr3R_4765001 RAL-819 2660 chr3R 4861544 4861598 chr3R 4861650 4861704 49 95 15.0 14.0 14.5 3.2 160 chr3R 4861544 intron opa + chr3R 4861624 intron opa + chr3R 4861704 intron opa + chr3R_49_4860001 chr3R_4860001 RAL-819 2661 chr3R 4887453 4887512 chr3R 4894854 4894882 rover 41 7395 14.0 20.0 17.0 2.3 7429 chr3R 4887453 intergenic not near genes chr3R 4891168 intergenic not near genes chr3R 4894882 intergenic not near genes chr3R_41_4890001 chr3R_4890001 RAL-819 2662 chr3R 4896270 4896307 chr3R 4896388 4896425 30 117 13.5 10.5 12.0 2.3 155 chr3R 4896270 intergenic CR45580 + chr3R 4896348 intergenic CR45580 + chr3R 4896425 5` UTR CR45580 + chr3R_30_4895001 chr3R_4895001 RAL-819 2663 chr3R 4896308 4896324 chr3R 4896386 4896442 14 115 6.0 9.5 7.8 1.6 134 chr3R 4896308 intergenic CR45580 + chr3R 4896375 intergenic CR45580 + chr3R 4896442 5` UTR CR45580 + chr3R_14_4895001 chr3R_4895001 RAL-819 2664 chr3R 4948356 4948390 chr3R 4949003 4949036 30 645 62.5 39.0 50.8 0.6 680 chr3R 4948356 intergenic snRNA:U1:82Eb -,UbcD6 - chr3R 4948696 intergenic UbcD6 - chr3R 4949036 3` UTR UbcD6 - chr3R_30_4945001 chr3R_4945001 RAL-819 2665 chr3R 4981384 4981440 chr3R 4981488 4981538 21 89 11.0 13.5 12.2 1.6 154 chr3R 4981384 intergenic not near genes chr3R 4981461 intergenic not near genes chr3R 4981538 intergenic CG14662 - chr3R_21_4980001 chr3R_4980001 RAL-819 2666 chr3R 4998372 4998381 chr3R 4998499 4998508 13 127 27.0 25.0 26.0 0.5 136 chr3R 4998372 intron CG2022 - chr3R 4998440 intron CG2022 - chr3R 4998508 intron CG2022 - chr3R_13_4995001 chr3R_4995001 RAL-819 2667 chr3R 5045820 5045878 chr3R 5052947 5053005 HMS-Beagle 47 7126 14.0 8.5 11.2 3.9 7185 chr3R 5045820 3` UTR CR43635 - chr3R 5049412 intergenic not near genes chr3R 5053005 intergenic CR45588 - chr3R_47_5045001 chr3R_5045001 RAL-819 2668 chr3R 5067956 5067970 chr3R 5073498 5073512 mdg3 9 5542 27.5 15.5 21.5 0.4 5556 chr3R 5067956 intergenic not near genes chr3R 5070734 intergenic not near genes chr3R 5073512 intergenic not near genes chr3R_9_5070001 chr3R_5070001 RAL-819 2669 chr3R 5067977 5068014 chr3R 5073497 5073556 mdg3 33 5537 9.0 15.0 12.0 2.5 5579 chr3R 5067977 intergenic not near genes chr3R 5070766 intergenic not near genes chr3R 5073556 intergenic not near genes chr3R_33_5070001 chr3R_5070001 RAL-819 2670 chr3R 5105547 5105580 chr3R 5105632 5105669 26 84 10.5 19.0 14.8 1.6 122 chr3R 5105547 intergenic not near genes chr3R 5105608 intergenic not near genes chr3R 5105669 intergenic not near genes chr3R_26_5105001 chr3R_5105001 RAL-819 2671 chr3R 5161929 5161970 chr3R 5162031 5162080 28 105 13.5 11.5 12.5 2.1 151 chr3R 5161929 intron dpr16 + chr3R 5162004 intron dpr16 + chr3R 5162080 intron dpr16 + chr3R_28_5160001 chr3R_5160001 RAL-819 2672 chr3R 5170248 5170303 chr3R 5170374 5170423 47 123 9.5 8.0 8.8 4.8 175 chr3R 5170248 intergenic dpr16 + chr3R 5170336 intergenic dpr16 + chr3R 5170423 intergenic dpr16 + chr3R_47_5170001 chr3R_5170001 RAL-819 2673 chr3R 5193874 5193934 chr3R 5194016 5194040 44 134 9.5 12.5 11.0 3.7 166 chr3R 5193874 intron cno - chr3R 5193957 intron cno - chr3R 5194040 intron cno - chr3R_44_5190001 chr3R_5190001 RAL-819 2674 chr3R 5236194 5236246 chr3R 5236347 5236399 43 150 13.5 12.5 13.0 3.1 205 chr3R 5236194 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236296 3` UTR rtp - chr3R 5236399 exon rtp - chr3R_43_5235001 chr3R_5235001 RAL-819 2675 chr3R 5250854 5250914 chr3R 5250991 5251049 22 133 11.5 4.5 8.0 2.4 195 chr3R 5250854 intron CG12163 - chr3R 5250952 intron CG12163 - chr3R 5251049 intron CG12163 - chr3R_22_5250001 chr3R_5250001 RAL-819 2676 chr3R 5278067 5278079 chr3R 5278173 5278185 6 106 23.0 14.0 18.5 0.3 118 chr3R 5278067 intron mtd - chr3R 5278126 intron mtd - chr3R 5278185 intron mtd - chr3R_6_5275001 chr3R_5275001 RAL-819 2677 chr3R 5278080 5278121 chr3R 5278171 5278222 31 104 8.0 13.5 10.8 2.6 142 chr3R 5278080 intron mtd - chr3R 5278151 intron mtd - chr3R 5278222 intron mtd - chr3R_31_5275001 chr3R_5275001 RAL-819 2678 chr3R 5282965 5282992 chr3R 5283069 5283096 17 102 29.0 21.5 25.2 0.6 131 chr3R 5282965 intron mtd - chr3R 5283030 intron mtd - chr3R 5283096 intron mtd - chr3R_17_5280001 chr3R_5280001 RAL-819 2679 chr3R 5306104 5306158 chr3R 5306213 5306268 47 106 18.0 7.5 12.8 3.4 164 chr3R 5306104 intron mtd - chr3R 5306186 intron mtd - chr3R 5306268 intron mtd - chr3R_47_5305001 chr3R_5305001 RAL-819 2680 chr3R 5338375 5338426 chr3R 5343575 5343622 Rt1c 46 5200 14.0 19.0 16.5 2.6 5247 chr3R 5338375 intron mtd - chr3R 5340998 intron mtd - chr3R 5343622 intron mtd - chr3R_46_5340001 chr3R_5340001 RAL-819 2681 chr3R 5445935 5445993 chr3R 5452420 5452478 Burdock 47 6484 15.0 10.5 12.8 3.4 6543 chr3R 5445935 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452478 intron CG14669 + chr3R_47_5445001 chr3R_5445001 RAL-819 2682 chr3R 5453304 5453349 chr3R 5453430 5453444 27 128 13.5 17.0 15.2 1.7 140 chr3R 5453304 intron CG14669 + chr3R 5453374 intron CG14669 + chr3R 5453444 intron CG14669 + chr3R_27_5450001 chr3R_5450001 RAL-819 2683 chr3R 5626440 5626463 chr3R 5626553 5626573 21 113 23.5 16.5 20.0 1.0 133 chr3R 5626440 intergenic RpL13A + chr3R 5626506 intergenic not near genes chr3R 5626573 intergenic not near genes chr3R_21_5625001 chr3R_5625001 RAL-819 2684 chr3R 5626464 5626495 chr3R 5626549 5626610 13 106 12.5 14.0 13.2 0.9 146 chr3R 5626464 intergenic not near genes chr3R 5626537 intergenic not near genes chr3R 5626610 intergenic not near genes chr3R_13_5625001 chr3R_5625001 RAL-819 2685 chr3R 5626985 5627041 chr3R 5627126 5627172 62 137 6.5 9.5 8.0 6.9 187 chr3R 5626985 intergenic not near genes chr3R 5627078 intergenic not near genes chr3R 5627172 intergenic not near genes chr3R_62_5625001 chr3R_5625001 RAL-819 2686 chr3R 5698087 5698094 chr3R 5698207 5698209 4 119 25.5 25.5 25.5 0.2 122 chr3R 5698087 intron plx + chr3R 5698148 intron plx + chr3R 5698209 intron plx + chr3R_4_5695001 chr3R_5695001 RAL-819 2687 chr3R 5698096 5698141 chr3R 5698205 5698228 32 116 7.5 24.0 15.8 1.9 132 chr3R 5698096 intron plx + chr3R 5698162 intron plx + chr3R 5698228 intron plx + chr3R_32_5695001 chr3R_5695001 RAL-819 2688 chr3R 5745990 5746045 chr3R 5746256 5746311 pogo 35 265 15.5 15.5 15.5 2.1 321 chr3R 5745990 3` UTR Madm + chr3R 5746150 3` UTR Madm + chr3R 5746311 3` UTR Madm + chr3R_35_5745001 chr3R_5745001 RAL-819 2689 chr3R 5746990 5747045 chr3R 5753206 5753220 diver 31 6214 12.0 14.5 13.2 2.2 6230 chr3R 5746990 intergenic Madm + chr3R 5750105 intergenic not near genes chr3R 5753220 intergenic CG2091 - chr3R_31_5750001 chr3R_5750001 RAL-819 2690 chr3R 5775967 5776026 chr3R 5776131 5776182 61 159 13.0 11.5 12.2 4.6 215 chr3R 5775967 intron CG2082 - chr3R 5776074 intron CG2082 - chr3R 5776182 intron CG2082 - chr3R_61_5775001 chr3R_5775001 RAL-819 2691 chr3R 5809090 5809140 chr3R 5809353 5809397 pogo 19 262 11.5 15.5 13.5 1.3 307 chr3R 5809090 3` UTR CG11000 + chr3R 5809244 3` UTR CG11000 + chr3R 5809397 3` UTR CG11000 + chr3R_19_5805001 chr3R_5805001 RAL-819 2692 chr3R 5822357 5822381 chr3R 5823549 5823573 1360 27 1191 23.0 15.0 19.0 1.4 1216 chr3R 5822357 3` UTR CG2023 - chr3R 5822965 3` UTR CG2023 - chr3R 5823573 3` UTR CG2023 - chr3R_27_5820001 chr3R_5820001 RAL-819 2693 chr3R 5822382 5822406 chr3R 5823544 5823582 1360 29 1187 11.5 13.5 12.5 2.1 1200 chr3R 5822382 3` UTR CG2023 - chr3R 5822982 3` UTR CG2023 - chr3R 5823582 3` UTR CG2023 - chr3R_29_5820001 chr3R_5820001 RAL-819 2694 chr3R 5836177 5836182 chr3R 5836306 5836311 6 129 34.5 34.5 34.5 0.2 134 chr3R 5836177 intron,3` UTR CG1208 +,CR45192 - chr3R 5836244 intron CG1208 + chr3R 5836311 intron CG1208 + chr3R_6_5835001 chr3R_5835001 RAL-819 2695 chr3R 5861556 5861592 chr3R 5861660 5861696 21 104 11.5 7.5 9.5 2.0 140 chr3R 5861556 intron CG2017 - chr3R 5861626 intron CG2017 - chr3R 5861696 intron CG2017 - chr3R_21_5860001 chr3R_5860001 RAL-819 2696 chr3R 5927539 5927559 chr3R 5927804 5927824 pogo 6 261 25.5 19.5 22.5 0.3 285 chr3R 5927539 intron CG34113 - chr3R 5927682 intron CG34113 - chr3R 5927824 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-819 2697 chr3R 5927560 5927577 chr3R 5927800 5927842 pogo 22 260 17.5 18.0 17.8 1.2 282 chr3R 5927560 intron CG34113 - chr3R 5927701 intron CG34113 - chr3R 5927842 intron CG34113 - chr3R_22_5925001 chr3R_5925001 RAL-819 2698 chr3R 5927578 5927588 chr3R 5927799 5927847 pogo 16 246 13.5 17.5 15.5 1.0 269 chr3R 5927578 intron CG34113 - chr3R 5927712 intron CG34113 - chr3R 5927847 intron CG34113 - chr3R_16_5925001 chr3R_5925001 RAL-819 2699 chr3R 5943378 5943417 chr3R 5943482 5943521 26 103 7.0 9.0 8.0 2.9 143 chr3R 5943378 intron CG34113 - chr3R 5943450 intron CG34113 - chr3R 5943521 intron CG34113 - chr3R_26_5940001 chr3R_5940001 RAL-819 2700 chr3R 6012630 6012678 chr3R 6012733 6012781 45 101 12.5 10.5 11.5 3.6 151 chr3R 6012630 intergenic not near genes chr3R 6012706 intergenic not near genes chr3R 6012781 intergenic not near genes chr3R_45_6010001 chr3R_6010001 RAL-819 2701 chr3R 6015946 6015992 chr3R 6024444 6024498 Tirant 43 8501 11.0 13.5 12.2 3.3 8552 chr3R 6015946 intergenic not near genes chr3R 6020222 intergenic not near genes chr3R 6024498 intergenic not near genes chr3R_43_6020001 chr3R_6020001 RAL-819 2702 chr3R 6059845 6059853 chr3R 6059956 6059964 4 109 36.5 21.0 28.8 0.1 119 chr3R 6059845 intergenic not near genes chr3R 6059904 intergenic not near genes chr3R 6059964 intergenic not near genes chr3R_4_6055001 chr3R_6055001 RAL-819 2703 chr3R 6059854 6059876 chr3R 6059955 6059987 15 106 27.0 20.0 23.5 0.6 133 chr3R 6059854 intergenic not near genes chr3R 6059920 intergenic not near genes chr3R 6059987 intergenic not near genes chr3R_15_6055001 chr3R_6055001 RAL-819 2704 chr3R 6059878 6059900 chr3R 6059954 6060011 24 104 15.5 19.5 17.5 1.3 133 chr3R 6059878 intergenic not near genes chr3R 6059944 intergenic not near genes chr3R 6060011 intergenic not near genes chr3R_24_6055001 chr3R_6055001 RAL-819 2705 chr3R 6080137 6080185 chr3R 6080244 6080301 33 114 9.0 12.0 10.5 2.9 164 chr3R 6080137 intergenic not near genes chr3R 6080219 intergenic not near genes chr3R 6080301 intergenic not near genes chr3R_33_6080001 chr3R_6080001 RAL-819 2706 chr3R 6119111 6119156 chr3R 6119215 6119267 32 109 6.5 10.5 8.5 3.4 156 chr3R 6119111 intergenic not near genes chr3R 6119189 intergenic not near genes chr3R 6119267 intergenic not near genes chr3R_32_6115001 chr3R_6115001 RAL-819 2707 chr3R 6121168 6121177 chr3R 6121411 6121420 BS 7 243 0.0 27.5 13.8 0.5 252 chr3R 6121168 intergenic not near genes chr3R 6121294 intergenic not near genes chr3R 6121420 intergenic not near genes chr3R_7_6120001 chr3R_6120001 RAL-819 2708 chr3R 6158488 6158528 chr3R 6167096 6167106 Tirant 13 8605 20.0 11.0 15.5 0.8 8618 chr3R 6158488 intergenic not near genes chr3R 6162797 intergenic not near genes chr3R 6167106 intergenic CG1077 + chr3R_13_6160001 chr3R_6160001 RAL-819 2709 chr3R 6158529 6158536 chr3R 6167091 6167121 Tirant 5 8594 16.0 9.5 12.8 0.4 8592 chr3R 6158529 intergenic not near genes chr3R 6162825 intergenic not near genes chr3R 6167121 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-819 2710 chr3R 6175150 6175206 chr3R 6182447 6182467 HMS-Beagle2 51 7291 8.0 16.5 12.2 3.9 7317 chr3R 6175150 intergenic Osi1 + chr3R 6178808 intron CR45194 + chr3R 6182467 intergenic CR45194 + chr3R_51_6175001 chr3R_6175001 RAL-819 2711 chr3R 6191156 6191198 chr3R 6191249 6191303 30 101 8.5 10.5 9.5 2.9 147 chr3R 6191156 intron NPFR + chr3R 6191230 intron NPFR + chr3R 6191303 intron NPFR + chr3R_30_6190001 chr3R_6190001 RAL-819 2712 chr3R 6460193 6460245 chr3R 6460372 6460394 44 173 24.5 15.5 20.0 2.1 201 chr3R 6460193 intergenic not near genes chr3R 6460294 intergenic not near genes chr3R 6460394 intergenic not near genes chr3R_44_6460001 chr3R_6460001 RAL-819 2713 chr3R 6461553 6461610 chr3R 6461659 6461715 29 103 7.5 8.5 8.0 3.2 162 chr3R 6461553 intergenic not near genes chr3R 6461634 intergenic not near genes chr3R 6461715 intergenic not near genes chr3R_29_6460001 chr3R_6460001 RAL-819 2714 chr3R 6510001 6510050 chr3R 6515106 6515156 jockey 30 5103 12.0 12.0 12.0 2.3 5155 chr3R 6510001 intergenic not near genes chr3R 6512578 intergenic not near genes chr3R 6515156 intergenic not near genes chr3R_30_6510001 chr3R_6510001 RAL-819 2715 chr3R 6541210 6541250 chr3R 6541457 6541497 24 246 10.0 14.0 12.0 1.8 287 chr3R 6541210 intron dpr11 - chr3R 6541354 intron dpr11 - chr3R 6541497 intron dpr11 - chr3R_24_6540001 chr3R_6540001 RAL-819 2716 chr3R 6578856 6578915 chr3R 6579001 6579060 53 142 9.0 9.5 9.2 5.2 204 chr3R 6578856 intron dpr11 - chr3R 6578958 intron dpr11 - chr3R 6579060 intron dpr11 - chr3R_53_6575001 chr3R_6575001 RAL-819 2717 chr3R 6717702 6717707 chr3R 6717836 6717869 11 149 1.0 15.0 8.0 1.2 167 chr3R 6717702 intron pb - chr3R 6717786 intron pb - chr3R 6717869 intron pb - chr3R_11_6715001 chr3R_6715001 RAL-819 2718 chr3R 6737484 6737526 chr3R 6739289 6739338 Doc 25 1808 18.0 20.5 19.2 1.2 1854 chr3R 6737484 intron pb - chr3R 6738411 intron pb - chr3R 6739338 intron pb - chr3R_25_6735001 chr3R_6735001 RAL-819 2719 chr3R 6803736 6803751 chr3R 6803837 6803846 15 101 0.0 15.0 7.5 1.8 110 chr3R 6803736 intergenic not near genes chr3R 6803791 intergenic not near genes chr3R 6803846 intergenic not near genes chr3R_15_6800001 chr3R_6800001 RAL-819 2720 chr3R 6891218 6891264 chr3R 6891319 6891365 11 99 12.0 23.0 17.5 0.6 147 chr3R 6891218 intergenic not near genes chr3R 6891292 intergenic not near genes chr3R 6891365 intergenic not near genes chr3R_11_6890001 chr3R_6890001 RAL-819 2721 chr3R 6978858 6978913 chr3R 6978968 6979021 38 109 6.5 10.0 8.2 4.1 163 chr3R 6978858 intron Antp - chr3R 6978940 intron Antp - chr3R 6979021 intron Antp - chr3R_38_6975001 chr3R_6975001 RAL-819 2722 chr3R 7015970 7015987 chr3R 7016072 7016089 7 102 8.0 1.5 4.8 1.2 119 chr3R 7015970 intergenic not near genes chr3R 7016030 intergenic not near genes chr3R 7016089 intergenic not near genes chr3R_7_7015001 chr3R_7015001 RAL-819 2723 chr3R 7092771 7092816 chr3R 7093350 7093405 43 585 10.0 13.5 11.8 3.4 634 chr3R 7092771 3` UTR CR43685 - chr3R 7093088 intron CR43685 - chr3R 7093405 3` UTR CR43685 - chr3R_43_7090001 chr3R_7090001 RAL-819 2724 chr3R 7103261 7103320 chr3R 7103361 7103384 42 93 12.5 20.0 16.2 2.4 123 chr3R 7103261 intron Alh - chr3R 7103322 intron Alh - chr3R 7103384 intron Alh - chr3R_42_7100001 chr3R_7100001 RAL-819 2725 chr3R 7105295 7105353 chr3R 7105403 7105441 41 105 9.5 11.0 10.2 3.7 146 chr3R 7105295 intron Alh - chr3R 7105368 intron Alh - chr3R 7105441 intron Alh - chr3R_41_7105001 chr3R_7105001 RAL-819 2726 chr3R 7121717 7121739 chr3R 7121824 7121847 11 107 19.0 16.5 17.8 0.6 130 chr3R 7121717 exon Alh - chr3R 7121782 intron Alh - chr3R 7121847 intron Alh - chr3R_11_7120001 chr3R_7120001 RAL-819 2727 chr3R 7126478 7126534 chr3R 7126598 7126654 54 119 9.0 9.5 9.2 5.3 176 chr3R 7126478 3` UTR,3` UTR CG10098 +,CG10068 - chr3R 7126566 3` UTR CG10068 - chr3R 7126654 3` UTR CG10068 - chr3R_54_7125001 chr3R_7125001 RAL-819 2728 chr3R 7132819 7132873 chr3R 7132935 7132984 45 114 10.0 13.5 11.8 3.5 165 chr3R 7132819 intergenic CG31493 + chr3R 7132902 intergenic CG31493 + chr3R 7132984 intergenic CG31493 + chr3R_45_7130001 chr3R_7130001 RAL-819 2729 chr3R 7173656 7173704 chr3R 7173761 7173804 33 104 14.0 15.5 14.8 2.1 148 chr3R 7173656 intron sas + chr3R 7173730 intron sas + chr3R 7173804 intron sas + chr3R_33_7170001 chr3R_7170001 RAL-819 2730 chr3R 7217432 7217485 chr3R 7217678 7217731 36 245 12.5 13.0 12.8 2.6 299 chr3R 7217432 intergenic CG14605 -,CG14606 - chr3R 7217582 intergenic CG14605 -,CG14606 - chr3R 7217731 exon CG14605 - chr3R_36_7215001 chr3R_7215001 RAL-819 2731 chr3R 7269892 7269932 chr3R 7270011 7270051 25 118 15.5 10.5 13.0 1.8 159 chr3R 7269892 3` UTR Syt4 + chr3R 7269972 3` UTR Syt4 + chr3R 7270051 3` UTR Syt4 + chr3R_25_7265001 chr3R_7265001 RAL-819 2732 chr3R 7302272 7302275 chr3R 7302389 7302392 5 117 32.0 9.5 20.8 0.2 120 chr3R 7302272 intron rn - chr3R 7302332 intron rn - chr3R 7302392 intron rn - chr3R_5_7300001 chr3R_7300001 RAL-819 2733 chr3R 7302276 7302298 chr3R 7302388 7302409 18 115 22.0 8.5 15.2 1.1 133 chr3R 7302276 intron rn - chr3R 7302342 intron rn - chr3R 7302409 intron rn - chr3R_18_7300001 chr3R_7300001 RAL-819 2734 chr3R 7302300 7302323 chr3R 7302387 7302440 19 114 12.5 8.5 10.5 1.7 140 chr3R 7302300 intron rn - chr3R 7302370 intron rn - chr3R 7302440 intron rn - chr3R_19_7300001 chr3R_7300001 RAL-819 2735 chr3R 7404942 7404970 chr3R 7405037 7405071 4 100 0.0 17.0 8.5 0.4 129 chr3R 7404942 intergenic not near genes chr3R 7405006 intergenic not near genes chr3R 7405071 intergenic not near genes chr3R_4_7405001 chr3R_7405001 RAL-819 2736 chr3R 7481804 7481864 chr3R 7481907 7481965 42 98 10.5 12.5 11.5 3.4 161 chr3R 7481804 intergenic not near genes chr3R 7481884 intergenic not near genes chr3R 7481965 intergenic not near genes chr3R_42_7480001 chr3R_7480001 RAL-819 2737 chr3R 7542449 7542473 chr3R 7542551 7542575 16 102 13.5 8.5 11.0 1.3 126 chr3R 7542449 intron alpha-Est2 + chr3R 7542512 intron alpha-Est2 + chr3R 7542575 intron alpha-Est2 + chr3R_16_7540001 chr3R_7540001 RAL-819 2738 chr3R 7548577 7548635 chr3R 7548681 7548737 60 102 18.5 17.0 17.8 3.2 160 chr3R 7548577 intron alpha-Est1 - chr3R 7548657 intron alpha-Est1 - chr3R 7548737 intron alpha-Est1 - chr3R_60_7545001 chr3R_7545001 RAL-819 2739 chr3R 7556908 7556963 chr3R 7557026 7557081 33 116 0.0 11.0 5.5 5.1 173 chr3R 7556908 intergenic not near genes chr3R 7556994 intergenic not near genes chr3R 7557081 intergenic not near genes chr3R_33_7555001 chr3R_7555001 RAL-819 2740 chr3R 7621506 7621564 chr3R 7621621 7621663 19 113 11.0 4.0 7.5 2.2 157 chr3R 7621506 intron CG34127 - chr3R 7621584 intron CG34127 - chr3R 7621663 intron CG34127 - chr3R_19_7620001 chr3R_7620001 RAL-819 2741 chr3R 7635628 7635682 chr3R 7635736 7635790 35 107 7.0 10.5 8.8 3.6 162 chr3R 7635628 intron CG34127 - chr3R 7635709 intron CG34127 - chr3R 7635790 intron CG34127 - chr3R_35_7635001 chr3R_7635001 RAL-819 2742 chr3R 7660757 7660818 chr3R 7660873 7660913 40 108 12.5 10.0 11.2 3.3 156 chr3R 7660757 intron Nlg1 + chr3R 7660835 intron Nlg1 + chr3R 7660913 intron Nlg1 + chr3R_40_7660001 chr3R_7660001 RAL-819 2743 chr3R 7677888 7677946 chr3R 7678026 7678084 39 133 8.5 8.5 8.5 4.1 196 chr3R 7677888 intron Nlg1 + chr3R 7677986 intron Nlg1 + chr3R 7678084 intron Nlg1 + chr3R_39_7675001 chr3R_7675001 RAL-819 2744 chr3R 7694553 7694609 chr3R 7713639 7713695 invader3 25 19085 9.5 8.0 8.8 2.6 19142 chr3R 7694553 3` UTR Nlg1 + chr3R 7704124 intergenic not near genes chr3R 7713695 intergenic not near genes chr3R_25_7700001 chr3R_7700001 RAL-819 2745 chr3R 7729442 7729496 chr3R 7737405 7737447 Stalker2 45 7961 14.5 10.0 12.2 3.4 8005 chr3R 7729442 intergenic not near genes chr3R 7733444 intergenic not near genes chr3R 7737447 intergenic not near genes chr3R_45_7730001 chr3R_7730001 RAL-819 2746 chr3R 7857550 7857604 chr3R 7857662 7857716 31 112 11.0 11.0 11.0 2.6 166 chr3R 7857550 3` UTR CG17816 - chr3R 7857633 3` UTR CG17816 - chr3R 7857716 3` UTR CG17816 - chr3R_31_7855001 chr3R_7855001 RAL-819 2747 chr3R 7884645 7884697 chr3R 7884743 7884778 35 96 11.5 7.5 9.5 3.3 133 chr3R 7884645 intron CG17816 - chr3R 7884712 intron CG17816 - chr3R 7884778 intron CG17816 - chr3R_35_7880001 chr3R_7880001 RAL-819 2748 chr3R 7973296 7973344 chr3R 7974383 7974409 1360 44 1085 8.5 13.5 11.0 3.7 1113 chr3R 7973296 intergenic not near genes chr3R 7973852 intergenic not near genes chr3R 7974409 3` UTR CD98hc - chr3R_44_7970001 chr3R_7970001 RAL-819 2749 chr3R 8041185 8041192 chr3R 8041308 8041310 5 122 43.5 46.0 44.8 0.1 125 chr3R 8041185 intergenic CG43060 + chr3R 8041248 exon CG43060 + chr3R 8041310 intron CG43060 + chr3R_5_8040001 chr3R_8040001 RAL-819 2750 chr3R 8049368 8049396 chr3R 8049581 8049609 9 213 4.5 25.5 15.0 0.6 241 chr3R 8049368 intron,exon CG43060 +,CG43618 + chr3R 8049488 intron CG43060 + chr3R 8049609 intron CG43060 + chr3R_9_8045001 chr3R_8045001 RAL-819 2751 chr3R 8090245 8090304 chr3R 8090447 8090504 44 200 6.5 12.0 9.2 4.3 259 chr3R 8090245 5` UTR CR44330 + chr3R 8090374 intergenic CR44330 + chr3R 8090504 intergenic CR44330 + chr3R_44_8090001 chr3R_8090001 RAL-819 2752 chr3R 8090541 8090566 chr3R 8094043 8094057 297 20 3499 18.5 31.5 25.0 0.8 3516 chr3R 8090541 intergenic CR44330 + chr3R 8092299 intergenic not near genes chr3R 8094057 intergenic CG7900 + chr3R_20_8090001 chr3R_8090001 RAL-819 2753 chr3R 8094387 8094436 chr3R 8099717 8099766 Transpac 47 5330 17.5 19.0 18.2 2.4 5379 chr3R 8094387 intron CG7900 + chr3R 8097076 intron CG7900 + chr3R 8099766 intron CG7900 + chr3R_47_8095001 chr3R_8095001 RAL-819 2754 chr3R 8101740 8101789 chr3R 8104847 8104857 G2 38 3105 10.0 15.5 12.8 2.8 3117 chr3R 8101740 exon CG7900 + chr3R 8103298 intron CG7900 + chr3R 8104857 3` UTR CG7900 + chr3R_38_8100001 chr3R_8100001 RAL-819 2755 chr3R 8123439 8123496 chr3R 8123568 8123595 45 125 16.0 10.5 13.2 3.2 156 chr3R 8123439 exon CG7878 + chr3R 8123517 intron CG7878 + chr3R 8123595 exon CG7878 + chr3R_45_8120001 chr3R_8120001 RAL-819 2756 chr3R 8207530 8207584 chr3R 8208400 8208454 F-element 35 865 13.0 12.0 12.5 2.6 924 chr3R 8207530 intergenic not near genes chr3R 8207992 intergenic not near genes chr3R 8208454 intergenic not near genes chr3R_35_8205001 chr3R_8205001 RAL-819 2757 chr3R 8212956 8213009 chr3R 8213304 8213357 47 345 14.0 15.0 14.5 3.0 401 chr3R 8212956 intergenic not near genes chr3R 8213156 intergenic not near genes chr3R 8213357 intergenic not near genes chr3R_47_8210001 chr3R_8210001 RAL-819 2758 chr3R 8339246 8339247 chr3R 21907534 21907536 33 13568289 59.5 63.0 61.2 0.5 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_33_15120001 chr3R_15120001 RAL-819 2759 chr3R 8363181 8363243 chr3R 8363283 8363307 50 94 22.5 14.5 18.5 2.6 126 chr3R 8363181 exon CG7963 + chr3R 8363244 exon CG7963 + chr3R 8363307 exon CG7963 + chr3R_50_8360001 chr3R_8360001 RAL-819 2760 chr3R 8377938 8377972 chr3R 8378038 8378048 13 103 18.0 14.0 16.0 0.8 110 chr3R 8377938 intron CG45263 - chr3R 8377993 intron CG45263 - chr3R 8378048 intron CG45263 - chr3R_13_8375001 chr3R_8375001 RAL-819 2761 chr3R 8393546 8393598 chr3R 8393655 8393681 42 94 9.5 10.0 9.8 3.9 135 chr3R 8393546 intron CG45263 - chr3R 8393614 intron CG45263 - chr3R 8393681 intron CG45263 - chr3R_42_8390001 chr3R_8390001 RAL-819 2762 chr3R 8393599 8393605 chr3R 8393654 8393688 7 76 5.5 9.5 7.5 0.8 89 chr3R 8393599 intron CG45263 - chr3R 8393644 intron CG45263 - chr3R 8393688 intron CG45263 - chr3R_7_8390001 chr3R_8390001 RAL-819 2763 chr3R 8402985 8402990 chr3R 8412176 8412181 roo 5 9190 38.0 19.5 28.8 0.2 9196 chr3R 8402985 intron CG45263 - chr3R 8407583 intron CG45263 - chr3R 8412181 intron CG45263 - chr3R_5_8405001 chr3R_8405001 RAL-819 2764 chr3R 8402995 8403038 chr3R 8412171 8412229 roo 42 9186 13.5 17.5 15.5 2.5 9234 chr3R 8402995 intron CG45263 - chr3R 8407612 intron CG45263 - chr3R 8412229 intron CG45263 - chr3R_42_8405001 chr3R_8405001 RAL-819 2765 chr3R 8431128 8431132 chr3R 8431240 8431244 6 112 36.0 19.0 27.5 0.2 116 chr3R 8431128 intron CG45263 - chr3R 8431186 intron CG45263 - chr3R 8431244 intron CG45263 - chr3R_6_8430001 chr3R_8430001 RAL-819 2766 chr3R 8431133 8431179 chr3R 8431238 8431291 41 109 12.5 17.5 15.0 2.6 158 chr3R 8431133 intron CG45263 - chr3R 8431212 intron CG45263 - chr3R 8431291 intron CG45263 - chr3R_41_8430001 chr3R_8430001 RAL-819 2767 chr3R 8439484 8439538 chr3R 8439585 8439623 22 92 13.5 11.5 12.5 1.6 139 chr3R 8439484 intron CG45263 - chr3R 8439554 intron CG45263 - chr3R 8439623 intron CG45263 - chr3R_22_8435001 chr3R_8435001 RAL-819 2768 chr3R 8489824 8489883 chr3R 8490138 8490178 43 312 12.5 11.0 11.8 3.4 354 chr3R 8489824 intergenic not near genes chr3R 8490001 intergenic not near genes chr3R 8490178 intergenic not near genes chr3R_43_8490001 chr3R_8490001 RAL-819 2769 chr3R 8552342 8552402 chr3R 8552447 8552505 53 100 15.5 15.0 15.2 3.3 163 chr3R 8552342 intergenic Or85d + chr3R 8552424 intergenic Or85d + chr3R 8552505 intergenic Or85d + chr3R_53_8550001 chr3R_8550001 RAL-819 2770 chr3R 8570455 8570509 chr3R 8575116 8575149 HMS-Beagle 28 4656 7.0 8.0 7.5 3.3 4694 chr3R 8570455 intergenic not near genes chr3R 8572802 intergenic not near genes chr3R 8575149 intergenic not near genes chr3R_28_8570001 chr3R_8570001 RAL-819 2771 chr3R 8601748 8601757 chr3R 8610926 8610934 roo 8 9178 37.0 14.0 25.5 0.3 9186 chr3R 8601748 intron 5-HT2B + chr3R 8606341 intron 5-HT2B + chr3R 8610934 intron 5-HT2B + chr3R_8_8605001 chr3R_8605001 RAL-819 2772 chr3R 8601759 8601760 chr3R 8610924 8610938 roo 4 9173 36.5 14.0 25.2 0.2 9179 chr3R 8601759 intron 5-HT2B + chr3R 8606348 intron 5-HT2B + chr3R 8610938 intron 5-HT2B + chr3R_4_8605001 chr3R_8605001 RAL-819 2773 chr3R 8601762 8601798 chr3R 8610923 8610976 roo 34 9172 15.0 14.0 14.5 2.2 9214 chr3R 8601762 intron 5-HT2B + chr3R 8606369 intron 5-HT2B + chr3R 8610976 intron 5-HT2B + chr3R_34_8605001 chr3R_8605001 RAL-819 2774 chr3R 8614791 8614819 chr3R 8614989 8615047 32 220 2.5 9.0 5.8 4.7 256 chr3R 8614791 intron 5-HT2B + chr3R 8614919 intron 5-HT2B + chr3R 8615047 intron 5-HT2B + chr3R_32_8610001 chr3R_8610001 RAL-819 2775 chr3R 8685272 8685314 chr3R 8685397 8685439 22 125 10.0 13.5 11.8 1.7 167 chr3R 8685272 intron CR44937 - chr3R 8685356 intron CR44937 - chr3R 8685439 intron CR44937 - chr3R_22_8685001 chr3R_8685001 RAL-819 2776 chr3R 8707332 8707335 chr3R 8709798 8709801 jockey 4 2466 35.0 17.5 26.2 0.1 2469 chr3R 8707332 intergenic not near genes chr3R 8708566 intergenic not near genes chr3R 8709801 intergenic not near genes chr3R_4_8705001 chr3R_8705001 RAL-819 2777 chr3R 8707340 8707384 chr3R 8709795 8709828 jockey 41 2463 14.0 16.5 15.2 2.5 2488 chr3R 8707340 intergenic not near genes chr3R 8708584 intergenic not near genes chr3R 8709828 intergenic not near genes chr3R_41_8705001 chr3R_8705001 RAL-819 2778 chr3R 8868776 8868784 chr3R 8872641 8872643 297 4 3864 29.5 13.0 21.2 0.2 3867 chr3R 8868776 intron pyd - chr3R 8870710 intron pyd - chr3R 8872643 intron pyd - chr3R_4_8870001 chr3R_8870001 RAL-819 2779 chr3R 8894852 8894905 chr3R 8896033 8896073 1360 32 1178 12.0 11.0 11.5 2.6 1221 chr3R 8894852 intron pyd - chr3R 8895462 intron pyd - chr3R 8896073 intron pyd - chr3R_32_8895001 chr3R_8895001 RAL-819 2780 chr3R 8898198 8898212 chr3R 8913803 8913817 297 12 15605 31.0 18.5 24.8 0.5 15619 chr3R 8898198 intron pyd - chr3R 8906008 intron pyd - chr3R 8913817 intron pyd - chr3R_12_8905001 chr3R_8905001 RAL-819 2781 chr3R 8917863 8917911 chr3R 8917968 8918016 29 104 4.5 10.0 7.2 3.5 153 chr3R 8917863 intron pyd - chr3R 8917940 intron pyd - chr3R 8918016 intron pyd - chr3R_29_8915001 chr3R_8915001 RAL-819 2782 chr3R 9036689 9036746 chr3R 9036810 9036867 33 119 5.0 10.5 7.8 3.7 178 chr3R 9036689 intron neur - chr3R 9036778 intron neur - chr3R 9036867 intron neur - chr3R_33_9035001 chr3R_9035001 RAL-819 2783 chr3R 5897864 5897865 chr3R 9088785 9088831 6 3190952 56.5 52.5 54.5 0.1 3190967 chr3R 5897864 intron CG34113 - chr3R 7493348 intron alpha-Est10 - chr3R 9088831 intron pum - chr3R_6_7490001 chr3R_7490001 RAL-819 2784 chr3R 9097343 9097404 chr3R 9097558 9097619 60 212 10.5 9.0 9.8 5.6 276 chr3R 9097343 intron pum - chr3R 9097481 intron pum - chr3R 9097619 intron pum - chr3R_60_9095001 chr3R_9095001 RAL-819 2785 chr3R 9101822 9101868 chr3R 9101936 9101991 33 121 11.0 7.5 9.2 3.2 169 chr3R 9101822 intron pum - chr3R 9101906 intron pum - chr3R 9101991 intron pum - chr3R_33_9100001 chr3R_9100001 RAL-819 2786 chr3R 9108845 9108884 chr3R 9108942 9108985 28 98 12.5 10.5 11.5 2.2 140 chr3R 9108845 intron pum - chr3R 9108915 intron pum - chr3R 9108985 intron pum - chr3R_28_9105001 chr3R_9105001 RAL-819 2787 chr3R 9294993 9295049 chr3R 9295096 9295147 39 102 6.5 8.5 7.5 4.6 154 chr3R 9294993 3` UTR CG8861 - chr3R 9295070 3` UTR CG8861 - chr3R 9295147 3` UTR CG8861 - chr3R_39_9295001 chr3R_9295001 RAL-819 2788 chr3R 9304503 9304514 chr3R 9311815 9311826 Stalker4 4 7312 53.5 10.5 32.0 0.1 7323 chr3R 9304503 intron CG8861 - chr3R 9308164 intron CG8861 - chr3R 9311826 intron CG8861 - chr3R_4_9305001 chr3R_9305001 RAL-819 2789 chr3R 9304519 9304554 chr3R 9311814 9311820 Stalker4 6 7284 34.5 10.5 22.5 0.3 7301 chr3R 9304519 intron CG8861 - chr3R 9308170 intron CG8861 - chr3R 9311820 intron CG8861 - chr3R_6_9305001 chr3R_9305001 RAL-819 2790 chr3R 9319551 9319564 chr3R 9320011 9320024 jockey 10 459 29.0 19.0 24.0 0.4 473 chr3R 9319551 intron CG8861 - chr3R 9319788 intron CG8861 - chr3R 9320024 intron CG8861 - chr3R_10_9315001 chr3R_9315001 RAL-819 2791 chr3R 9319565 9319584 chr3R 9320005 9320044 jockey 16 458 19.5 16.0 17.8 0.9 479 chr3R 9319565 intron CG8861 - chr3R 9319804 intron CG8861 - chr3R 9320044 intron CG8861 - chr3R_16_9315001 chr3R_9315001 RAL-819 2792 chr3R 9319587 9319602 chr3R 9320004 9320062 jockey 10 445 14.0 15.5 14.8 0.6 475 chr3R 9319587 intron CG8861 - chr3R 9319824 intron CG8861 - chr3R 9320062 intron CG8861 - chr3R_10_9315001 chr3R_9315001 RAL-819 2793 chr3R 9337700 9337759 chr3R 9338813 9338872 55 1110 12.5 16.0 14.2 3.6 1172 chr3R 9337700 intergenic CG8121 + chr3R 9338286 3` UTR CR43301 - chr3R 9338872 3` UTR CR43301 - chr3R_55_9335001 chr3R_9335001 RAL-819 2794 chr3R 9350482 9350524 chr3R 9350588 9350630 45 105 15.0 14.0 14.5 2.9 148 chr3R 9350482 intron CG45050 + chr3R 9350556 intron CG45050 + chr3R 9350630 intron CG45050 + chr3R_45_9350001 chr3R_9350001 RAL-819 2795 chr3R 9361806 9361839 chr3R 9362067 9362105 pogo 21 265 11.0 12.5 11.8 1.6 299 chr3R 9361806 3` UTR CG45050 + chr3R 9361956 3` UTR CG45050 + chr3R 9362105 3` UTR CG45050 + chr3R_21_9360001 chr3R_9360001 RAL-819 2796 chr3R 9362957 9362969 chr3R 9363071 9363083 8 114 18.0 14.5 16.2 0.5 126 chr3R 9362957 3` UTR CG45050 + chr3R 9363020 intergenic CG45050 +,CG18473 + chr3R 9363083 intergenic CG45050 +,CG18473 + chr3R_8_9360001 chr3R_9360001 RAL-819 2797 chr3R 9362972 9363007 chr3R 9363064 9363121 25 111 5.0 13.0 9.0 2.5 149 chr3R 9362972 3` UTR CG45050 + chr3R 9363046 intergenic CG45050 +,CG18473 + chr3R 9363121 intergenic CG45050 +,CG18473 + chr3R_25_9360001 chr3R_9360001 RAL-819 2798 chr3R 9379123 9379176 chr3R 9379229 9379282 20 106 0.0 11.5 5.8 2.9 159 chr3R 9379123 intron FER - chr3R 9379202 intron FER - chr3R 9379282 intron FER - chr3R_20_9375001 chr3R_9375001 RAL-819 2799 chr3R 9382791 9382849 chr3R 9382941 9382999 41 149 6.0 8.5 7.2 5.0 208 chr3R 9382791 intron FER - chr3R 9382895 intron FER - chr3R 9382999 intron FER - chr3R_41_9380001 chr3R_9380001 RAL-819 2800 chr3R 9418242 9418242 chr3R 22874804 22874823 4 13456575 62.0 21.0 41.5 0.1 13456581 chr3R 9418242 intron ps + chr3R 16146532 exon CG5903 - chr3R 22874823 intergenic not near genes chr3R_4_16145001 chr3R_16145001 RAL-819 2801 chr3R 9447435 9447451 chr3R 9447564 9447580 18 129 20.0 21.5 20.8 0.8 145 chr3R 9447435 intron ps + chr3R 9447508 intron ps + chr3R 9447580 intron ps + chr3R_18_9445001 chr3R_9445001 RAL-819 2802 chr3R 9447452 9447460 chr3R 9447551 9447591 4 122 16.5 15.0 15.8 0.2 139 chr3R 9447452 intron ps + chr3R 9447522 intron ps + chr3R 9447591 intron ps + chr3R_4_9445001 chr3R_9445001 RAL-819 2803 chr3R 9496267 9496325 chr3R 9496469 9496527 47 198 14.0 12.0 13.0 3.4 260 chr3R 9496267 exon CG8147 + chr3R 9496397 exon CG8147 + chr3R 9496527 exon CG8147 + chr3R_47_9495001 chr3R_9495001 RAL-819 2804 chr3R 9620954 9620956 chr3R 21907534 21907536 6 12286579 43.0 63.0 53.0 0.1 12286582 chr3R 9620954 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-819 2805 chr3R 9644557 9644614 chr3R 9644663 9644720 45 106 7.5 10.5 9.0 4.5 163 chr3R 9644557 intron Dh44 + chr3R 9644638 intron Dh44 + chr3R 9644720 intron Dh44 + chr3R_45_9640001 chr3R_9640001 RAL-819 2806 chr3R 9877172 9877224 chr3R 9877273 9877277 39 98 18.0 12.0 15.0 2.4 105 chr3R 9877172 intron,3` UTR Glut4EF +,CR45029 - chr3R 9877224 intron,intron Glut4EF +,CR45029 - chr3R 9877277 intron,intron Glut4EF +,CR45029 - chr3R_39_9875001 chr3R_9875001 RAL-819 2807 chr3R 9877226 9877231 chr3R 9877272 9877332 5 89 15.5 12.0 13.8 0.3 106 chr3R 9877226 intron,intron Glut4EF +,CR45029 - chr3R 9877279 intron,intron Glut4EF +,CR45029 - chr3R 9877332 intron,intron Glut4EF +,CR45029 - chr3R_5_9875001 chr3R_9875001 RAL-819 2808 chr3R 10085925 10085981 chr3R 10086248 10086298 41 322 6.5 6.5 6.5 5.5 373 chr3R 10085925 intron CR45054 + chr3R 10086112 intron CR45054 + chr3R 10086298 intron CR45054 + chr3R_41_10085001 chr3R_10085001 RAL-819 2809 chr3R 10183077 10183103 chr3R 10183179 10183205 22 102 10.0 7.0 8.5 2.3 128 chr3R 10183077 intron CG12814 - chr3R 10183141 intron CG12814 - chr3R 10183205 intron CG12814 - chr3R_22_10180001 chr3R_10180001 RAL-819 2810 chr3R 10196926 10196928 chr3R 10202938 10202940 297 4 6012 44.0 0.0 22.0 0.2 6014 chr3R 10196926 intron Syn + chr3R 10199933 intron Syn + chr3R 10202940 intron Syn + chr3R_4_10195001 chr3R_10195001 RAL-819 2811 chr3R 10231764 10231815 chr3R 10237366 10237417 mdg3 42 5599 10.5 11.5 11.0 3.5 5653 chr3R 10231764 intron CG42795 + chr3R 10234590 intron CG42795 + chr3R 10237417 intron CG42795 + chr3R_42_10230001 chr3R_10230001 RAL-819 2812 chr3R 10255358 10255365 chr3R 10260823 10260830 I-element 12 5464 33.5 16.0 24.8 0.5 5472 chr3R 10255358 3` UTR Sirt6 - chr3R 10258094 intron Sirt6 - chr3R 10260830 exon Sirt6 - chr3R_12_10255001 chr3R_10255001 RAL-819 2813 chr3R 10255367 10255387 chr3R 10260817 10260852 I-element 20 5460 26.0 13.5 19.8 1.0 5485 chr3R 10255367 3` UTR Sirt6 - chr3R 10258110 intron Sirt6 - chr3R 10260852 exon Sirt6 - chr3R_20_10255001 chr3R_10255001 RAL-819 2814 chr3R 10275558 10275559 chr3R 10275654 10275661 6 101 18.5 20.0 19.2 0.3 103 chr3R 10275558 intron CG43143 + chr3R 10275610 intron CG43143 + chr3R 10275661 intron CG43143 + chr3R_6_10275001 chr3R_10275001 RAL-819 2815 chr3R 10275560 10275584 chr3R 10275650 10275686 19 101 9.5 19.0 14.2 1.2 126 chr3R 10275560 intron CG43143 + chr3R 10275623 intron CG43143 + chr3R 10275686 intron CG43143 + chr3R_19_10275001 chr3R_10275001 RAL-819 2816 chr3R 10308350 10308380 chr3R 10308458 10308491 31 110 18.5 12.0 15.2 1.9 141 chr3R 10308350 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308420 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308491 3` UTR CG6293 - chr3R_31_10305001 chr3R_10305001 RAL-819 2817 chr3R 10308381 10308397 chr3R 10308456 10308508 14 108 9.5 11.0 10.2 1.2 127 chr3R 10308381 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308444 3` UTR,3` UTR CG43143 +,CG6293 - chr3R 10308508 3` UTR CG6293 - chr3R_14_10305001 chr3R_10305001 RAL-819 2818 chr3R 10531847 10531858 chr3R 10531953 10531964 7 106 25.0 1.0 13.0 0.5 117 chr3R 10531847 intron hth - chr3R 10531906 intron hth - chr3R 10531964 intron hth - chr3R_7_10530001 chr3R_10530001 RAL-819 2819 chr3R 10531859 10531896 chr3R 10531946 10531966 28 102 10.5 3.5 7.0 3.5 107 chr3R 10531859 intron hth - chr3R 10531912 intron hth - chr3R 10531966 intron hth - chr3R_28_10530001 chr3R_10530001 RAL-819 2820 chr3R 10535309 10535342 chr3R 10535427 10535460 27 118 0.5 11.5 6.0 3.9 151 chr3R 10535309 intron hth - chr3R 10535384 intron hth - chr3R 10535460 intron hth - chr3R_27_10535001 chr3R_10535001 RAL-819 2821 chr3R 10563432 10563458 chr3R 10563555 10563565 9 117 31.5 22.5 27.0 0.3 133 chr3R 10563432 intron hth - chr3R 10563498 intron hth - chr3R 10563565 intron hth - chr3R_9_10560001 chr3R_10560001 RAL-819 2822 chr3R 10563461 10563492 chr3R 10563554 10563595 21 110 7.0 22.5 14.8 1.3 134 chr3R 10563461 intron hth - chr3R 10563528 intron hth - chr3R 10563595 intron hth - chr3R_21_10560001 chr3R_10560001 RAL-819 2823 chr3R 10593427 10593450 chr3R 10593530 10593559 10 107 14.5 16.5 15.5 0.6 132 chr3R 10593427 intron hth - chr3R 10593493 intron hth - chr3R 10593559 exon hth - chr3R_10_10590001 chr3R_10590001 RAL-819 2824 chr3R 10593453 10593461 chr3R 10593517 10593534 11 97 10.5 10.0 10.2 1.0 81 chr3R 10593453 intron hth - chr3R 10593494 intron hth - chr3R 10593534 intron hth - chr3R_11_10590001 chr3R_10590001 RAL-819 2825 chr3R 10718245 10718255 chr3R 10718347 10718357 6 102 25.0 13.0 19.0 0.3 112 chr3R 10718245 intergenic not near genes chr3R 10718301 intergenic not near genes chr3R 10718357 intergenic not near genes chr3R_6_10715001 chr3R_10715001 RAL-819 2826 chr3R 10718257 10718298 chr3R 10718346 10718400 30 97 10.5 13.0 11.8 2.3 143 chr3R 10718257 intergenic not near genes chr3R 10718328 intergenic not near genes chr3R 10718400 intergenic not near genes chr3R_30_10715001 chr3R_10715001 RAL-819 2827 chr3R 10732298 10732346 chr3R 10733195 10733238 39 896 10.5 11.5 11.0 3.2 940 chr3R 10732298 intergenic not near genes chr3R 10732768 intergenic not near genes chr3R 10733238 intergenic not near genes chr3R_39_10730001 chr3R_10730001 RAL-819 2828 chr3R 10745401 10745408 chr3R 10745512 10745518 5 111 36.5 7.0 21.8 0.2 117 chr3R 10745401 intron TkR86C - chr3R 10745460 intron TkR86C - chr3R 10745518 intron TkR86C - chr3R_5_10745001 chr3R_10745001 RAL-819 2829 chr3R 10745409 10745453 chr3R 10745511 10745545 42 105 16.0 7.0 11.5 3.4 136 chr3R 10745409 intron TkR86C - chr3R 10745477 intron TkR86C - chr3R 10745545 intron TkR86C - chr3R_42_10745001 chr3R_10745001 RAL-819 2830 chr3R 10804056 10804078 chr3R 10804183 10804206 13 127 20.0 0.0 10.0 1.2 150 chr3R 10804056 intergenic CG14692 - chr3R 10804131 intergenic CG14692 - chr3R 10804206 intergenic CG14692 - chr3R_13_10800001 chr3R_10800001 RAL-819 2831 chr3R 10804194 10804203 chr3R 10811730 10811735 17.6 9 7551 1.0 24.5 12.8 0.7 7541 chr3R 10804194 intergenic CG14692 - chr3R 10807964 intergenic not near genes chr3R 10811735 3` UTR CG14693 - chr3R_9_10805001 chr3R_10805001 RAL-819 2832 chr3R 10817195 10817250 chr3R 10817303 10817358 40 107 16.0 11.5 13.8 2.7 163 chr3R 10817195 3` UTR CG4089 + chr3R 10817276 3` UTR CG4089 + chr3R 10817358 3` UTR CG4089 + chr3R_40_10815001 chr3R_10815001 RAL-819 2833 chr3R 10835525 10835528 chr3R 10835632 10835635 5 107 35.5 6.0 20.8 0.2 110 chr3R 10835525 intron Cad86C + chr3R 10835580 intron Cad86C + chr3R 10835635 intron Cad86C + chr3R_5_10835001 chr3R_10835001 RAL-819 2834 chr3R 10835529 10835583 chr3R 10835631 10835690 30 102 9.0 5.5 7.2 3.7 161 chr3R 10835529 intron Cad86C + chr3R 10835610 intron Cad86C + chr3R 10835690 intron Cad86C + chr3R_30_10835001 chr3R_10835001 RAL-819 2835 chr3R 10868588 10868600 chr3R 10868671 10868698 10 92 34.5 16.5 25.5 0.4 110 chr3R 10868588 5` UTR SelR - chr3R 10868643 intergenic SelR -,Tsp86D + chr3R 10868698 intergenic Tsp86D +,SelR - chr3R_10_10865001 chr3R_10865001 RAL-819 2836 chr3R 10868609 10868620 chr3R 10868668 10868719 7 89 19.5 16.0 17.8 0.4 110 chr3R 10868609 5` UTR SelR - chr3R 10868664 intergenic SelR -,Tsp86D + chr3R 10868719 5` UTR Tsp86D + chr3R_7_10865001 chr3R_10865001 RAL-819 2837 chr3R 10904887 10904937 chr3R 10905116 10905166 33 227 9.5 8.0 8.8 3.4 279 chr3R 10904887 intergenic not near genes chr3R 10905026 intergenic not near genes chr3R 10905166 intergenic not near genes chr3R_33_10905001 chr3R_10905001 RAL-819 2838 chr3R 10906808 10906857 chr3R 10906909 10906958 36 96 8.5 10.5 9.5 3.4 150 chr3R 10906808 intergenic not near genes chr3R 10906883 intergenic not near genes chr3R 10906958 intergenic not near genes chr3R_36_10905001 chr3R_10905001 RAL-819 2839 chr3R 10919659 10919666 chr3R 10919762 10919767 6 103 32.0 13.0 22.5 0.3 108 chr3R 10919659 intergenic not near genes chr3R 10919713 intergenic not near genes chr3R 10919767 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-819 2840 chr3R 10919668 10919718 chr3R 10919761 10919821 36 101 10.5 13.0 11.8 2.8 153 chr3R 10919668 intergenic not near genes chr3R 10919744 intergenic not near genes chr3R 10919821 intergenic not near genes chr3R_36_10915001 chr3R_10915001 RAL-819 2841 chr3R 10920022 10920079 chr3R 10920125 10920167 37 101 17.5 18.0 17.8 2.0 145 chr3R 10920022 intergenic not near genes chr3R 10920094 intergenic not near genes chr3R 10920167 intergenic not near genes chr3R_37_10920001 chr3R_10920001 RAL-819 2842 chr3R 10957839 10957883 chr3R 10963253 10963282 Rt1c 27 5407 12.5 14.5 13.5 1.9 5443 chr3R 10957839 intergenic not near genes chr3R 10960560 intergenic not near genes chr3R 10963282 intergenic not near genes chr3R_27_10960001 chr3R_10960001 RAL-819 2843 chr3R 11048555 11048606 chr3R 11048664 11048715 29 105 12.5 19.0 15.8 1.7 160 chr3R 11048555 3` UTR CG34114 + chr3R 11048635 3` UTR CG34114 + chr3R 11048715 3` UTR CG34114 + chr3R_29_11045001 chr3R_11045001 RAL-819 2844 chr3R 11065584 11065616 chr3R 11071247 11071284 297 11 5667 2.5 9.0 5.8 1.6 5700 chr3R 11065584 intergenic not near genes chr3R 11068434 intergenic not near genes chr3R 11071284 intergenic not near genes chr3R_11_11065001 chr3R_11065001 RAL-819 2845 chr3R 11078922 11078980 chr3R 11079027 11079083 43 97 8.0 9.0 8.5 4.5 161 chr3R 11078922 intergenic not near genes chr3R 11079002 intergenic not near genes chr3R 11079083 intergenic not near genes chr3R_43_11075001 chr3R_11075001 RAL-819 2846 chr3R 11085458 11085478 chr3R 11085552 11085575 16 100 11.5 9.5 10.5 1.4 117 chr3R 11085458 3` UTR CR44940 - chr3R 11085516 intergenic CR44940 - chr3R 11085575 intergenic CR44940 - chr3R_16_11085001 chr3R_11085001 RAL-819 2847 chr3R 11102308 11102318 chr3R 11102414 11102415 11 105 32.5 19.0 25.8 0.4 107 chr3R 11102308 intergenic not near genes chr3R 11102362 intergenic not near genes chr3R 11102415 intergenic not near genes chr3R_11_11100001 chr3R_11100001 RAL-819 2848 chr3R 11102319 11102353 chr3R 11102408 11102444 22 98 15.5 16.5 16.0 1.3 125 chr3R 11102319 intergenic not near genes chr3R 11102382 intergenic not near genes chr3R 11102444 intergenic not near genes chr3R_22_11100001 chr3R_11100001 RAL-819 2849 chr3R 11103147 11103177 chr3R 11103254 11103263 6 104 1.0 0.0 0.5 4.0 116 chr3R 11103147 intergenic not near genes chr3R 11103205 intergenic not near genes chr3R 11103263 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-819 2850 chr3R 11155017 11155068 chr3R 11155120 11155160 35 101 14.5 8.0 11.2 2.9 143 chr3R 11155017 intron Ugt86Dc + chr3R 11155088 intron Ugt86Dc + chr3R 11155160 intron Ugt86Dc + chr3R_35_11155001 chr3R_11155001 RAL-819 2851 chr3R 11174568 11174614 chr3R 11175307 11175348 25 736 73.0 78.5 75.8 0.3 780 chr3R 11174568 exon Ugt86Dj - chr3R 11174958 intron Ugt86Dj - chr3R 11175348 exon Ugt86Dj - chr3R_25_11170001 chr3R_11170001 RAL-819 2852 chr3R 11247221 11247228 chr3R 11247327 11247334 INE-1 5 106 29.5 5.0 17.2 0.3 113 chr3R 11247221 intergenic CG5214 +,CR43283 - chr3R 11247278 intergenic CR43283 -,CG5214 + chr3R 11247334 intergenic CR43283 -,CG5214 + chr3R_5_11245001 chr3R_11245001 RAL-819 2853 chr3R 11265907 11265918 chr3R 11266016 11266027 9 109 21.5 31.0 26.2 0.3 120 chr3R 11265907 intergenic not near genes chr3R 11265967 intergenic not near genes chr3R 11266027 intergenic not near genes chr3R_9_11265001 chr3R_11265001 RAL-819 2854 chr3R 11294441 11294479 chr3R 11294777 11294815 32 333 17.5 13.0 15.2 2.0 374 chr3R 11294441 intron CR31386 - chr3R 11294628 intron CR31386 - chr3R 11294815 intron CR31386 - chr3R_32_11290001 chr3R_11290001 RAL-819 2855 chr3R 11294480 11294499 chr3R 11294776 11294835 15 333 7.0 12.5 9.8 1.4 355 chr3R 11294480 intron CR31386 - chr3R 11294658 intron CR31386 - chr3R 11294835 intron CR31386 - chr3R_15_11290001 chr3R_11290001 RAL-819 2856 chr3R 11307168 11307222 chr3R 11307280 11307294 40 107 8.0 12.5 10.2 3.6 126 chr3R 11307168 intergenic not near genes chr3R 11307231 intergenic not near genes chr3R 11307294 intergenic not near genes chr3R_40_11305001 chr3R_11305001 RAL-819 2857 chr3R 11379212 11379262 chr3R 11388392 11388426 roo 31 9179 13.0 11.0 12.0 2.4 9214 chr3R 11379212 intron pros + chr3R 11383819 intron pros + chr3R 11388426 intron pros + chr3R_31_11380001 chr3R_11380001 RAL-819 2858 chr3R 11406261 11406316 chr3R 11406363 11406418 42 101 11.5 10.5 11.0 3.5 157 chr3R 11406261 3` UTR pros + chr3R 11406340 3` UTR pros + chr3R 11406418 3` UTR pros + chr3R_42_11405001 chr3R_11405001 RAL-819 2859 chr3R 11694702 11694718 chr3R 11694820 11694833 11 117 24.5 16.0 20.2 0.5 131 chr3R 11694702 intergenic Fer3 - chr3R 11694768 intergenic Fer3 - chr3R 11694833 intergenic not near genes chr3R_11_11690001 chr3R_11690001 RAL-819 2860 chr3R 11694719 11694749 chr3R 11694816 11694867 26 114 13.0 15.0 14.0 1.7 148 chr3R 11694719 intergenic Fer3 - chr3R 11694793 intergenic Fer3 - chr3R 11694867 intergenic not near genes chr3R_26_11690001 chr3R_11690001 RAL-819 2861 chr3R 11707372 11707434 chr3R 11707714 11707763 47 339 9.5 14.5 12.0 3.6 391 chr3R 11707372 intergenic not near genes chr3R 11707568 intergenic not near genes chr3R 11707763 intergenic not near genes chr3R_47_11705001 chr3R_11705001 RAL-819 2862 chr3R 11828711 11828726 chr3R 11828869 11828885 17 156 35.0 13.5 24.2 0.7 174 chr3R 11828711 intron CG6959 - chr3R 11828798 intron CG6959 - chr3R 11828885 intron CG6959 - chr3R_17_11825001 chr3R_11825001 RAL-819 2863 chr3R 11828727 11828763 chr3R 11828866 11828870 18 148 17.0 9.0 13.0 1.3 143 chr3R 11828727 intron CG6959 - chr3R 11828798 intron CG6959 - chr3R 11828870 intron CG6959 - chr3R_18_11825001 chr3R_11825001 RAL-819 2864 chr3R 11830326 11830360 chr3R 11830435 11830465 13 107 8.0 10.5 9.2 1.3 139 chr3R 11830326 intron CG6959 - chr3R 11830396 intron CG6959 - chr3R 11830465 intron CG6959 - chr3R_13_11830001 chr3R_11830001 RAL-819 2865 chr3R 11830950 11830963 chr3R 11831119 11831132 10 169 9.5 11.5 10.5 0.9 182 chr3R 11830950 intron CG6959 - chr3R 11831041 intron CG6959 - chr3R 11831132 intron CG6959 - chr3R_10_11830001 chr3R_11830001 RAL-819 2866 chr3R 11841043 11841094 chr3R 11846253 11846264 BS 44 5211 19.5 14.5 17.0 2.4 5221 chr3R 11841043 intron CG6959 - chr3R 11843654 intron CG6959 - chr3R 11846264 intron CG6959 - chr3R_44_11840001 chr3R_11840001 RAL-819 2867 chr3R 11850986 11851041 chr3R 11851093 11851148 55 103 14.5 10.5 12.5 4.1 162 chr3R 11850986 intron CG6959 - chr3R 11851067 intron CG6959 - chr3R 11851148 intron CG6959 - chr3R_55_11850001 chr3R_11850001 RAL-819 2868 chr3R 11859608 11859666 chr3R 11859715 11859773 45 105 16.5 16.0 16.2 2.6 165 chr3R 11859608 intron CG6959 - chr3R 11859690 intron CG6959 - chr3R 11859773 intron CG6959 - chr3R_45_11855001 chr3R_11855001 RAL-819 2869 chr3R 11873120 11873172 chr3R 11873290 11873330 26 169 14.5 14.0 14.2 1.7 210 chr3R 11873120 intergenic not near genes chr3R 11873225 intergenic not near genes chr3R 11873330 intergenic not near genes chr3R_26_11870001 chr3R_11870001 RAL-819 2870 chr3R 11909334 11909349 chr3R 11909439 11909454 13 102 40.5 17.0 28.8 0.4 120 chr3R 11909334 intron Cad87A - chr3R 11909394 intron Cad87A - chr3R 11909454 intron Cad87A - chr3R_13_11905001 chr3R_11905001 RAL-819 2871 chr3R 11909352 11909394 chr3R 11909437 11909449 44 95 17.0 15.5 16.2 2.6 97 chr3R 11909352 intron Cad87A - chr3R 11909400 intron Cad87A - chr3R 11909449 intron Cad87A - chr3R_44_11905001 chr3R_11905001 RAL-819 2872 chr3R 11945358 11945406 chr3R 11945481 11945529 45 122 12.0 15.0 13.5 3.1 171 chr3R 11945358 intron Cad87A - chr3R 11945444 intron Cad87A - chr3R 11945529 intron Cad87A - chr3R_45_11945001 chr3R_11945001 RAL-819 2873 chr3R 11957828 11957879 chr3R 11958136 11958172 S-element 29 304 17.0 2.0 9.5 2.8 344 chr3R 11957828 intergenic not near genes chr3R 11958000 intergenic not near genes chr3R 11958172 intergenic not near genes chr3R_29_11955001 chr3R_11955001 RAL-819 2874 chr3R 11994984 11995009 chr3R 11995079 11995114 8 103 20.0 10.5 15.2 0.5 130 chr3R 11994984 exon Tk - chr3R 11995049 exon Tk - chr3R 11995114 exon Tk - chr3R_8_11995001 chr3R_11995001 RAL-819 2875 chr3R 11995012 11995026 chr3R 11995073 11995103 12 90 17.5 9.0 13.2 0.8 91 chr3R 11995012 exon Tk - chr3R 11995058 exon Tk - chr3R 11995103 exon Tk - chr3R_12_11995001 chr3R_11995001 RAL-819 2876 chr3R 12017019 12017022 chr3R 12017121 12017124 5 102 15.5 34.5 25.0 0.2 105 chr3R 12017019 5` UTR CG3313 - chr3R 12017072 intergenic CG3313 -,Spt3 + chr3R 12017124 intergenic Spt3 +,CG3313 - chr3R_5_12015001 chr3R_12015001 RAL-819 2877 chr3R 12022858 12022905 chr3R 12025060 12025107 pogo 29 2201 13.0 13.5 13.2 2.0 2249 chr3R 12022858 intergenic not near genes chr3R 12023982 intergenic not near genes chr3R 12025107 intergenic not near genes chr3R_29_12020001 chr3R_12020001 RAL-819 2878 chr3R 12037336 12037345 chr3R 12037613 12037629 5 283 0.0 24.5 12.2 0.4 293 chr3R 12037336 intergenic not near genes chr3R 12037482 intergenic not near genes chr3R 12037629 intergenic not near genes chr3R_5_12035001 chr3R_12035001 RAL-819 2879 chr3R 12052392 12052398 chr3R 12052494 12052498 4 102 25.0 41.5 33.2 0.1 106 chr3R 12052392 intergenic not near genes chr3R 12052445 intergenic not near genes chr3R 12052498 intergenic not near genes chr3R_4_12050001 chr3R_12050001 RAL-819 2880 chr3R 12052399 12052404 chr3R 12052493 12052506 6 100 25.0 41.5 33.2 0.2 107 chr3R 12052399 intergenic not near genes chr3R 12052452 intergenic not near genes chr3R 12052506 intergenic not near genes chr3R_6_12050001 chr3R_12050001 RAL-819 2881 chr3R 12081976 12082029 chr3R 12082077 12082128 42 99 11.5 5.5 8.5 4.4 152 chr3R 12081976 intron CG14741 - chr3R 12082052 intron CG14741 - chr3R 12082128 intron CG14741 - chr3R_42_12080001 chr3R_12080001 RAL-819 2882 chr3R 12111858 12111924 chr3R 12111968 12112018 41 100 1.5 12.5 7.0 5.1 160 chr3R 12111858 intergenic dpr17 + chr3R 12111938 intergenic not near genes chr3R 12112018 intergenic not near genes chr3R_41_12110001 chr3R_12110001 RAL-819 2883 chr3R 12154030 12154060 chr3R 12154431 12154492 43 417 80.0 95.0 87.5 0.5 462 chr3R 12154030 intron dpr15 - chr3R 12154261 intron dpr15 - chr3R 12154492 intron dpr15 - chr3R_43_12150001 chr3R_12150001 RAL-819 2884 chr3R 12169209 12169222 chr3R 12169312 12169325 7 103 23.0 17.5 20.2 0.3 116 chr3R 12169209 intergenic not near genes chr3R 12169267 intergenic not near genes chr3R 12169325 intergenic not near genes chr3R_7_12165001 chr3R_12165001 RAL-819 2885 chr3R 12175205 12175262 chr3R 12175310 12175368 19 103 13.0 9.0 11.0 1.6 163 chr3R 12175205 intergenic not near genes chr3R 12175286 intergenic not near genes chr3R 12175368 intergenic not near genes chr3R_19_12175001 chr3R_12175001 RAL-819 2886 chr3R 12183155 12183207 chr3R 12183266 12183318 33 108 9.5 9.5 9.5 3.1 163 chr3R 12183155 intergenic not near genes chr3R 12183236 intergenic not near genes chr3R 12183318 intergenic not near genes chr3R_33_12180001 chr3R_12180001 RAL-819 2887 chr3R 12267836 12267889 chr3R 12267941 12267994 35 104 9.0 10.5 9.8 3.2 158 chr3R 12267836 intron svp + chr3R 12267915 intron svp + chr3R 12267994 intron svp + chr3R_35_12265001 chr3R_12265001 RAL-819 2888 chr3R 12297626 12297644 chr3R 12297728 12297736 4 93 19.5 31.5 25.5 0.2 110 chr3R 12297626 intron svp + chr3R 12297681 intron svp + chr3R 12297736 intron svp + chr3R_4_12295001 chr3R_12295001 RAL-819 2889 chr3R 12307788 12307806 chr3R 12307879 12307887 8 90 12.5 34.0 23.2 0.3 99 chr3R 12307788 intergenic not near genes chr3R 12307838 intergenic not near genes chr3R 12307887 intergenic not near genes chr3R_8_12305001 chr3R_12305001 RAL-819 2890 chr3R 12321953 12322005 chr3R 12322051 12322079 41 95 13.5 18.5 16.0 2.4 126 chr3R 12321953 intergenic not near genes chr3R 12322016 intergenic not near genes chr3R 12322079 intergenic not near genes chr3R_41_12320001 chr3R_12320001 RAL-819 2891 chr3R 12392865 12392901 chr3R 12392990 12393026 38 120 12.5 26.5 19.5 1.9 161 chr3R 12392865 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392946 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393026 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_38_12390001 chr3R_12390001 RAL-819 2892 chr3R 12543587 12543623 chr3R 12543702 12543738 25 112 15.0 18.0 16.5 1.4 151 chr3R 12543587 intron Octbeta3R - chr3R 12543662 intron Octbeta3R - chr3R 12543738 intron Octbeta3R - chr3R_25_12540001 chr3R_12540001 RAL-819 2893 chr3R 12598981 12599032 chr3R 12599145 12599179 44 153 18.5 9.0 13.8 3.0 198 chr3R 12598981 intergenic not near genes chr3R 12599080 intergenic not near genes chr3R 12599179 intergenic not near genes chr3R_44_12595001 chr3R_12595001 RAL-819 2894 chr3R 12720702 12720709 chr3R 12720897 12720904 5 194 28.5 12.0 20.2 0.2 202 chr3R 12720702 intron Men - chr3R 12720803 intron Men - chr3R 12720904 intron Men - chr3R_5_12720001 chr3R_12720001 RAL-819 2895 chr3R 12720712 12720760 chr3R 12720896 12720955 41 193 8.0 12.0 10.0 3.7 243 chr3R 12720712 intron Men - chr3R 12720834 intron Men - chr3R 12720955 intron Men - chr3R_41_12720001 chr3R_12720001 RAL-819 2896 chr3R 12725924 12725971 chr3R 12726048 12726101 35 117 14.0 9.5 11.8 2.7 177 chr3R 12725924 intergenic not near genes chr3R 12726012 intergenic not near genes chr3R 12726101 intergenic not near genes chr3R_35_12725001 chr3R_12725001 RAL-819 2897 chr3R 12735156 12735177 chr3R 12735431 12735452 11 274 11.5 10.5 11.0 0.9 296 chr3R 12735156 intergenic not near genes chr3R 12735304 intergenic not near genes chr3R 12735452 intergenic not near genes chr3R_11_12735001 chr3R_12735001 RAL-819 2898 chr3R 12735772 12735828 chr3R 12735895 12735951 31 120 13.5 10.0 11.8 2.4 179 chr3R 12735772 intergenic not near genes chr3R 12735862 intergenic not near genes chr3R 12735951 intergenic not near genes chr3R_31_12735001 chr3R_12735001 RAL-819 2899 chr3R 12763085 12763153 chr3R 12763198 12763255 22 102 0.0 8.0 4.0 4.4 170 chr3R 12763085 intron beat-Vc - chr3R 12763170 intron beat-Vc - chr3R 12763255 intron beat-Vc - chr3R_22_12760001 chr3R_12760001 RAL-819 2900 chr3R 12766383 12766416 chr3R 12766492 12766524 23 103 13.0 12.0 12.5 1.7 141 chr3R 12766383 intron beat-Vc - chr3R 12766454 intron beat-Vc - chr3R 12766524 intron beat-Vc - chr3R_23_12765001 chr3R_12765001 RAL-819 2901 chr3R 12766417 12766440 chr3R 12766491 12766549 19 100 8.5 10.5 9.5 1.8 132 chr3R 12766417 intron beat-Vc - chr3R 12766483 intron beat-Vc - chr3R 12766549 intron beat-Vc - chr3R_19_12765001 chr3R_12765001 RAL-819 2902 chr3R 12805828 12805886 chr3R 12805939 12805995 45 108 9.0 11.0 10.0 4.1 167 chr3R 12805828 intergenic not near genes chr3R 12805912 intergenic not near genes chr3R 12805995 intergenic not near genes chr3R_45_12805001 chr3R_12805001 RAL-819 2903 chr3R 12819005 12819048 chr3R 12819112 12819151 39 105 14.0 7.5 10.8 3.3 146 chr3R 12819005 intergenic not near genes chr3R 12819078 intergenic not near genes chr3R 12819151 intergenic not near genes chr3R_39_12815001 chr3R_12815001 RAL-819 2904 chr3R 12825581 12825636 chr3R 12825682 12825735 46 95 13.0 9.5 11.2 3.8 154 chr3R 12825581 intergenic not near genes chr3R 12825658 intergenic not near genes chr3R 12825735 intergenic not near genes chr3R_46_12825001 chr3R_12825001 RAL-819 2905 chr3R 12855123 12855161 chr3R 12855224 12855264 29 102 11.0 11.5 11.2 2.4 141 chr3R 12855123 intergenic CG10126 - chr3R 12855194 intergenic CG10126 - chr3R 12855264 intergenic CG10126 - chr3R_29_12855001 chr3R_12855001 RAL-819 2906 chr3R 12861208 12861245 chr3R 12861377 12861414 23 169 10.5 7.5 9.0 2.3 206 chr3R 12861208 intergenic not near genes chr3R 12861311 intergenic not near genes chr3R 12861414 intergenic not near genes chr3R_23_12860001 chr3R_12860001 RAL-819 2907 chr3R 12864528 12864560 chr3R 12865049 12865087 roo 12 526 9.5 9.0 9.2 1.2 559 chr3R 12864528 intergenic not near genes chr3R 12864808 intergenic not near genes chr3R 12865087 intergenic not near genes chr3R_12_12860001 chr3R_12860001 RAL-819 2908 chr3R 12866462 12866517 chr3R 12866638 12866693 31 176 16.0 10.5 13.2 2.2 231 chr3R 12866462 intergenic not near genes chr3R 12866578 intergenic not near genes chr3R 12866693 intergenic not near genes chr3R_31_12865001 chr3R_12865001 RAL-819 2909 chr3R 12868034 12868062 chr3R 12868566 12868567 7 528 11.0 0.0 5.5 1.1 533 chr3R 12868034 intergenic not near genes chr3R 12868300 intergenic not near genes chr3R 12868567 intergenic not near genes chr3R_7_12865001 chr3R_12865001 RAL-819 2910 chr3R 12873016 12873069 chr3R 12873130 12873183 41 111 7.0 12.5 9.8 3.8 167 chr3R 12873016 intergenic not near genes chr3R 12873100 intergenic not near genes chr3R 12873183 intergenic not near genes chr3R_41_12870001 chr3R_12870001 RAL-819 2911 chr3R 12885951 12886008 chr3R 12886054 12886091 37 93 5.5 8.5 7.0 4.6 140 chr3R 12885951 intergenic not near genes chr3R 12886021 intergenic not near genes chr3R 12886091 intergenic not near genes chr3R_37_12885001 chr3R_12885001 RAL-819 2912 chr3R 12886908 12886951 chr3R 12887019 12887062 20 109 12.5 18.0 15.2 1.2 154 chr3R 12886908 intergenic not near genes chr3R 12886985 intergenic not near genes chr3R 12887062 intergenic not near genes chr3R_20_12885001 chr3R_12885001 RAL-819 2913 chr3R 12920136 12920182 chr3R 12925357 12925410 copia 33 5224 6.5 17.5 12.0 2.5 5274 chr3R 12920136 intron beat-Vb + chr3R 12922773 intron beat-Vb + chr3R 12925410 intron beat-Vb + chr3R_33_12920001 chr3R_12920001 RAL-819 2914 chr3R 12935538 12935546 chr3R 12935694 12935703 8 157 7.5 11.0 9.2 0.8 165 chr3R 12935538 intergenic not near genes chr3R 12935620 intergenic not near genes chr3R 12935703 intergenic not near genes chr3R_8_12935001 chr3R_12935001 RAL-819 2915 chr3R 12941886 12941945 chr3R 12942005 12942047 53 114 13.0 14.0 13.5 3.7 161 chr3R 12941886 intergenic not near genes chr3R 12941966 intergenic not near genes chr3R 12942047 intergenic not near genes chr3R_53_12940001 chr3R_12940001 RAL-819 2916 chr3R 12942631 12942690 chr3R 12942758 12942817 23 126 8.5 9.0 8.8 2.3 186 chr3R 12942631 intergenic not near genes chr3R 12942724 intergenic not near genes chr3R 12942817 intergenic not near genes chr3R_23_12940001 chr3R_12940001 RAL-819 2917 chr3R 12943953 12943962 chr3R 12944064 12944074 9 112 28.5 12.5 20.5 0.4 121 chr3R 12943953 intergenic not near genes chr3R 12944014 intergenic not near genes chr3R 12944074 intergenic not near genes chr3R_9_12940001 chr3R_12940001 RAL-819 2918 chr3R 12943964 12944007 chr3R 12944061 12944116 25 108 13.5 11.0 12.2 1.9 152 chr3R 12943964 intergenic not near genes chr3R 12944040 intergenic not near genes chr3R 12944116 intergenic not near genes chr3R_25_12940001 chr3R_12940001 RAL-819 2919 chr3R 12944525 12944578 chr3R 12944633 12944686 25 107 8.0 9.5 8.8 2.6 161 chr3R 12944525 intergenic not near genes chr3R 12944606 intergenic not near genes chr3R 12944686 intergenic not near genes chr3R_25_12940001 chr3R_12940001 RAL-819 2920 chr3R 12999090 12999148 chr3R 12999193 12999251 32 101 16.0 14.5 15.2 2.0 161 chr3R 12999090 exon CG7518 + chr3R 12999170 intron CG7518 + chr3R 12999251 intron CG7518 + chr3R_32_12995001 chr3R_12995001 RAL-819 2921 chr3R 13059936 13059959 chr3R 13060156 13060172 16 218 17.0 0.0 8.5 1.7 236 chr3R 13059936 intron sim + chr3R 13060054 intron sim + chr3R 13060172 intron sim + chr3R_16_13060001 chr3R_13060001 RAL-819 2922 chr3R 13066979 13067133 chr3R 13067091 13067234 46 105 2.0 0.5 1.2 20.9 255 chr3R 13066979 intron sim + chr3R 13067106 intron sim + chr3R 13067234 intron sim + chr3R_46_13065001 chr3R_13065001 RAL-819 2923 chr3R 13120746 13120800 chr3R 13120847 13120902 45 97 19.0 9.0 14.0 3.0 156 chr3R 13120746 intron timeout + chr3R 13120824 intron timeout + chr3R 13120902 intron timeout + chr3R_45_13120001 chr3R_13120001 RAL-819 2924 chr3R 13135802 13135857 chr3R 13138002 13138057 pogo 33 2199 12.0 10.5 11.2 2.7 2255 chr3R 13135802 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136930 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138057 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_33_13135001 chr3R_13135001 RAL-819 2925 chr3R 13143016 13143066 chr3R 13148616 13148666 mdg3 39 5587 13.0 12.5 12.8 2.8 5650 chr3R 13143016 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145841 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148666 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_39_13145001 chr3R_13145001 RAL-819 2926 chr3R 13174520 13174568 chr3R 13174648 13174700 31 129 6.0 14.5 10.2 2.8 180 chr3R 13174520 intergenic not near genes chr3R 13174610 intergenic not near genes chr3R 13174700 intergenic not near genes chr3R_31_13170001 chr3R_13170001 RAL-819 2927 chr3R 13195925 13195976 chr3R 13196045 13196051 41 115 16.0 7.5 11.8 3.2 126 chr3R 13195925 intergenic not near genes chr3R 13195988 intergenic not near genes chr3R 13196051 intergenic not near genes chr3R_41_13195001 chr3R_13195001 RAL-819 2928 chr3R 13197149 13197207 chr3R 13198454 13198512 40 1304 45.0 60.5 52.8 0.7 1363 chr3R 13197149 intergenic not near genes chr3R 13197830 intergenic not near genes chr3R 13198512 intergenic not near genes chr3R_40_13195001 chr3R_13195001 RAL-819 2929 chr3R 13197024 13197079 chr3R 13198469 13198525 31 1445 32.0 61.5 46.8 0.6 1501 chr3R 13197024 intergenic not near genes chr3R 13197774 intergenic not near genes chr3R 13198525 intergenic not near genes chr3R_31_13195001 chr3R_13195001 RAL-819 2930 chr3R 13314078 13314134 chr3R 13318890 13318926 Doc 30 4809 7.5 14.0 10.8 2.5 4848 chr3R 13314078 intergenic not near genes chr3R 13316502 intergenic not near genes chr3R 13318926 intergenic CG45080 - chr3R_30_13315001 chr3R_13315001 RAL-819 2931 chr3R 13376257 13376260 chr3R 13376371 13376374 5 114 13.5 17.5 15.5 0.3 117 chr3R 13376257 intron CG9813 - chr3R 13376316 intron CG9813 - chr3R 13376374 intron CG9813 - chr3R_5_13375001 chr3R_13375001 RAL-819 2932 chr3R 13376263 13376299 chr3R 13376370 13376413 20 111 8.0 17.0 12.5 1.5 150 chr3R 13376263 intron CG9813 - chr3R 13376338 intron CG9813 - chr3R 13376413 intron CG9813 - chr3R_20_13375001 chr3R_13375001 RAL-819 2933 chr3R 13418639 13418684 chr3R 13418740 13418784 31 100 8.0 9.0 8.5 3.3 145 chr3R 13418639 intergenic not near genes chr3R 13418712 intergenic not near genes chr3R 13418784 intergenic not near genes chr3R_31_13415001 chr3R_13415001 RAL-819 2934 chr3R 13435362 13435421 chr3R 13435562 13435621 58 198 11.0 13.5 12.2 4.4 259 chr3R 13435362 intergenic yrt - chr3R 13435492 intergenic not near genes chr3R 13435621 intergenic not near genes chr3R_58_13435001 chr3R_13435001 RAL-819 2935 chr3R 13474415 13474419 chr3R 13474523 13474527 4 108 38.5 14.0 26.2 0.1 112 chr3R 13474415 intergenic not near genes chr3R 13474471 intergenic not near genes chr3R 13474527 intergenic not near genes chr3R_4_13470001 chr3R_13470001 RAL-819 2936 chr3R 13474421 13474469 chr3R 13474521 13474573 39 102 16.0 13.5 14.8 2.5 152 chr3R 13474421 intergenic not near genes chr3R 13474497 intergenic not near genes chr3R 13474573 intergenic not near genes chr3R_39_13470001 chr3R_13470001 RAL-819 2937 chr3R 13490977 13490997 chr3R 13491106 13491119 10 127 31.5 41.0 36.2 0.3 142 chr3R 13490977 intergenic not near genes chr3R 13491048 intergenic not near genes chr3R 13491119 intergenic not near genes chr3R_10_13490001 chr3R_13490001 RAL-819 2938 chr3R 13517202 13517256 chr3R 13520044 13520098 jockey 18 2842 10.0 0.0 5.0 3.0 2896 chr3R 13517202 intergenic not near genes chr3R 13518650 intergenic not near genes chr3R 13520098 intergenic not near genes chr3R_18_13515001 chr3R_13515001 RAL-819 2939 chr3R 13536427 13536446 chr3R 13536541 13536545 16 112 7.0 27.0 17.0 0.9 118 chr3R 13536427 intergenic not near genes chr3R 13536486 intergenic not near genes chr3R 13536545 intergenic not near genes chr3R_16_13535001 chr3R_13535001 RAL-819 2940 chr3R 13580821 13580831 chr3R 13580923 13580928 6 101 24.5 39.5 32.0 0.2 107 chr3R 13580821 intergenic not near genes chr3R 13580874 intergenic not near genes chr3R 13580928 intergenic not near genes chr3R_6_13580001 chr3R_13580001 RAL-819 2941 chr3R 13598485 13598514 chr3R 13598633 13598643 16 149 9.5 17.5 13.5 1.1 158 chr3R 13598485 intergenic not near genes chr3R 13598564 intergenic not near genes chr3R 13598643 intergenic not near genes chr3R_16_13595001 chr3R_13595001 RAL-819 2942 chr3R 13598515 13598528 chr3R 13598630 13598684 14 139 4.0 16.0 10.0 1.3 169 chr3R 13598515 intergenic not near genes chr3R 13598600 intergenic not near genes chr3R 13598684 intergenic not near genes chr3R_14_13595001 chr3R_13595001 RAL-819 2943 chr3R 13603030 13603077 chr3R 13603146 13603193 36 116 10.0 11.0 10.5 3.1 163 chr3R 13603030 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603193 intergenic not near genes chr3R_36_13600001 chr3R_13600001 RAL-819 2944 chr3R 13619008 13619066 chr3R 13619137 13619195 25 128 4.5 10.0 7.2 3.0 187 chr3R 13619008 intergenic CR45680 - chr3R 13619102 intergenic not near genes chr3R 13619195 intergenic not near genes chr3R_25_13615001 chr3R_13615001 RAL-819 2945 chr3R 13659712 13659829 chr3R 13659843 13659943 18 122 0.0 0.0 0.0 18.0 231 chr3R 13659712 intron Hrb87F - chr3R 13659828 intron Hrb87F - chr3R 13659943 intron Hrb87F - chr3R_18_13655001 chr3R_13655001 RAL-819 2946 chr3R 13672916 13672972 chr3R 13673019 13673075 51 102 10.0 15.0 12.5 3.8 159 chr3R 13672916 intron Task6 - chr3R 13672996 intron Task6 - chr3R 13673075 intron Task6 - chr3R_51_13670001 chr3R_13670001 RAL-819 2947 chr3R 13693028 13693028 chr3R 21907534 21907536 62 8214507 59.5 63.0 61.2 1.0 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_62_17800001 chr3R_17800001 RAL-819 2948 chr3R 13728547 13728555 chr3R 13728649 13728651 5 101 9.5 0.0 4.8 0.9 104 chr3R 13728547 intron CG34383 + chr3R 13728599 intron CG34383 + chr3R 13728651 intron CG34383 + chr3R_5_13725001 chr3R_13725001 RAL-819 2949 chr3R 13741769 13741817 chr3R 13741917 13741965 38 147 9.5 12.0 10.8 3.2 196 chr3R 13741769 intron CG34383 + chr3R 13741867 intron CG34383 + chr3R 13741965 intron CG34383 + chr3R_38_13740001 chr3R_13740001 RAL-819 2950 chr3R 13758133 13758172 chr3R 13758244 13758283 12 110 0.0 13.0 6.5 1.6 150 chr3R 13758133 intron CG34383 + chr3R 13758208 intron CG34383 + chr3R 13758283 intron CG34383 + chr3R_12_13755001 chr3R_13755001 RAL-819 2951 chr3R 13828821 13828870 chr3R 13828932 13828959 38 108 11.0 5.0 8.0 4.2 138 chr3R 13828821 intergenic CR43300 + chr3R 13828890 intergenic CR43300 + chr3R 13828959 intergenic not near genes chr3R_38_13825001 chr3R_13825001 RAL-819 2952 chr3R 13841234 13841240 chr3R 13841340 13841346 4 106 1.0 9.5 5.2 0.6 112 chr3R 13841234 intergenic not near genes chr3R 13841290 intergenic not near genes chr3R 13841346 intergenic not near genes chr3R_4_13840001 chr3R_13840001 RAL-819 2953 chr3R 13841244 13841260 chr3R 13841339 13841349 7 95 1.0 9.0 5.0 1.2 105 chr3R 13841244 intergenic not near genes chr3R 13841296 intergenic not near genes chr3R 13841349 intergenic not near genes chr3R_7_13840001 chr3R_13840001 RAL-819 2954 chr3R 13841262 13841282 chr3R 13841337 13841362 12 81 0.5 7.5 4.0 2.4 100 chr3R 13841262 intergenic not near genes chr3R 13841312 intergenic not near genes chr3R 13841362 intergenic not near genes chr3R_12_13840001 chr3R_13840001 RAL-819 2955 chr3R 13850285 13850342 chr3R 13850405 13850455 34 116 0.0 14.5 7.2 4.1 170 chr3R 13850285 intergenic not near genes chr3R 13850370 intergenic not near genes chr3R 13850455 intergenic not near genes chr3R_34_13850001 chr3R_13850001 RAL-819 2956 chr3R 13851752 13851794 chr3R 13851857 13851909 24 100 14.0 22.5 18.2 1.2 157 chr3R 13851752 intergenic not near genes chr3R 13851830 intergenic not near genes chr3R 13851909 intergenic not near genes chr3R_24_13850001 chr3R_13850001 RAL-819 2957 chr3R 13863655 13863716 chr3R 13863768 13863784 61 109 11.5 15.0 13.2 4.3 129 chr3R 13863655 intergenic not near genes chr3R 13863720 intergenic not near genes chr3R 13863784 intergenic not near genes chr3R_61_13860001 chr3R_13860001 RAL-819 2958 chr3R 13890824 13890850 chr3R 13891112 13891138 23 287 11.0 11.5 11.2 1.9 314 chr3R 13890824 intergenic not near genes chr3R 13890981 intergenic not near genes chr3R 13891138 intergenic not near genes chr3R_23_13890001 chr3R_13890001 RAL-819 2959 chr3R 13909891 13909908 chr3R 13909995 13910012 11 103 12.0 12.5 12.2 0.8 121 chr3R 13909891 intergenic not near genes chr3R 13909952 intergenic not near genes chr3R 13910012 intergenic not near genes chr3R_11_13905001 chr3R_13905001 RAL-819 2960 chr3R 13974493 13974537 chr3R 13974595 13974639 11 99 3.0 15.0 9.0 1.1 146 chr3R 13974493 intron,5` UTR rdx -,CR43460 + chr3R 13974566 intron,5` UTR rdx -,CR43460 + chr3R 13974639 intron,5` UTR rdx -,CR43460 + chr3R_11_13970001 chr3R_13970001 RAL-819 2961 chr3R 14021623 14021680 chr3R 14023464 14023522 S-element 40 1841 14.5 7.5 11.0 3.3 1899 chr3R 14021623 intron rdx - chr3R 14022572 intron rdx - chr3R 14023522 intron rdx - chr3R_40_14020001 chr3R_14020001 RAL-819 2962 chr3R 14037560 14037577 chr3R 14037664 14037666 7 101 28.5 13.0 20.8 0.3 106 chr3R 14037560 intergenic not near genes chr3R 14037613 intergenic not near genes chr3R 14037666 intergenic not near genes chr3R_7_14035001 chr3R_14035001 RAL-819 2963 chr3R 14067116 14067153 chr3R 14067220 14067257 26 103 14.0 8.5 11.2 2.1 141 chr3R 14067116 exon foxo + chr3R 14067186 intron foxo + chr3R 14067257 intron foxo + chr3R_26_14065001 chr3R_14065001 RAL-819 2964 chr3R 14117418 14117425 chr3R 14117519 14117526 5 101 33.5 19.5 26.5 0.2 108 chr3R 14117418 intron Kif19A - chr3R 14117472 intron Kif19A - chr3R 14117526 intron Kif19A - chr3R_5_14115001 chr3R_14115001 RAL-819 2965 chr3R 14117426 14117467 chr3R 14117517 14117568 34 99 17.5 18.5 18.0 1.8 142 chr3R 14117426 intron Kif19A - chr3R 14117497 intron Kif19A - chr3R 14117568 intron Kif19A - chr3R_34_14115001 chr3R_14115001 RAL-819 2966 chr3R 14136193 14136202 chr3R 14136306 14136310 8 112 0.0 0.0 0.0 8.0 117 chr3R 14136193 intergenic not near genes chr3R 14136252 intergenic not near genes chr3R 14136310 intergenic not near genes chr3R_8_14135001 chr3R_14135001 RAL-819 2967 chr3R 14152638 14152695 chr3R 14152777 14152787 45 136 10.0 12.5 11.2 3.7 149 chr3R 14152638 5` UTR CG42500 - chr3R 14152712 intergenic CG42500 -,CG9722 - chr3R 14152787 intergenic CG9722 -,CG42500 - chr3R_45_14150001 chr3R_14150001 RAL-819 2968 chr3R 14180790 14180812 chr3R 14185580 14185602 F-element 17 4790 18.0 5.0 11.5 1.4 4812 chr3R 14180790 intron Dop1R1 - chr3R 14183196 intron Dop1R1 - chr3R 14185602 intron Dop1R1 - chr3R_17_14180001 chr3R_14180001 RAL-819 2969 chr3R 14246368 14246396 chr3R 14247889 14247917 jockey 16 1518 18.5 10.0 14.2 1.1 1549 chr3R 14246368 intergenic not near genes chr3R 14247142 intergenic not near genes chr3R 14247917 intergenic not near genes chr3R_16_14245001 chr3R_14245001 RAL-819 2970 chr3R 14246397 14246418 chr3R 14247888 14247939 jockey 15 1512 13.0 9.0 11.0 1.2 1542 chr3R 14246397 intergenic not near genes chr3R 14247168 intergenic not near genes chr3R 14247939 intergenic not near genes chr3R_15_14245001 chr3R_14245001 RAL-819 2971 chr3R 14248706 14248733 chr3R 14248809 14248836 28 101 11.0 11.0 11.0 2.3 130 chr3R 14248706 intergenic not near genes chr3R 14248771 intergenic not near genes chr3R 14248836 intergenic not near genes chr3R_28_14245001 chr3R_14245001 RAL-819 2972 chr3R 14308806 14308850 chr3R 14308983 14309027 48 175 8.0 13.5 10.8 4.1 221 chr3R 14308806 intergenic su(Hw) -,RpII15 + chr3R 14308916 intergenic RpII15 +,su(Hw) - chr3R 14309027 intergenic RpII15 +,su(Hw) - chr3R_48_14305001 chr3R_14305001 RAL-819 2973 chr3R 14338228 14338234 chr3R 14338330 14338335 4 102 19.5 24.5 22.0 0.2 107 chr3R 14338228 intron NK7.1 - chr3R 14338282 intron NK7.1 - chr3R 14338335 intron NK7.1 - chr3R_4_14335001 chr3R_14335001 RAL-819 2974 chr3R 14338243 14338251 chr3R 14338294 14338353 21 79 13.5 7.5 10.5 1.8 110 chr3R 14338243 intron NK7.1 - chr3R 14338298 intron NK7.1 - chr3R 14338353 intron NK7.1 - chr3R_21_14335001 chr3R_14335001 RAL-819 2975 chr3R 14338252 14338255 chr3R 14338293 14338326 4 79 12.0 7.5 9.8 0.4 74 chr3R 14338252 intron NK7.1 - chr3R 14338289 intron NK7.1 - chr3R 14338326 intron NK7.1 - chr3R_4_14335001 chr3R_14335001 RAL-819 2976 chr3R 14357485 14357544 chr3R 14357918 14357977 42 430 3.5 10.0 6.8 5.4 492 chr3R 14357485 intron NK7.1 - chr3R 14357731 intron NK7.1 - chr3R 14357977 intron NK7.1 - chr3R_42_14355001 chr3R_14355001 RAL-819 2977 chr3R 14386191 14386236 chr3R 14386295 14386345 11 108 0.0 8.5 4.2 2.1 154 chr3R 14386191 intergenic not near genes chr3R 14386268 intergenic not near genes chr3R 14386345 intergenic not near genes chr3R_11_14385001 chr3R_14385001 RAL-819 2978 chr3R 14408512 14408526 chr3R 14408626 14408640 16 114 13.5 9.5 11.5 1.3 128 chr3R 14408512 intron cv-c - chr3R 14408576 intron cv-c - chr3R 14408640 intron cv-c - chr3R_16_14405001 chr3R_14405001 RAL-819 2979 chr3R 14440697 14440754 chr3R 14440798 14440855 42 100 9.5 10.0 9.8 3.9 158 chr3R 14440697 intron cv-c - chr3R 14440776 intron cv-c - chr3R 14440855 intron cv-c - chr3R_42_14440001 chr3R_14440001 RAL-819 2980 chr3R 14527377 14527415 chr3R 14527479 14527517 28 102 22.0 15.0 18.5 1.4 140 chr3R 14527377 intron Pde6 - chr3R 14527447 intron Pde6 - chr3R 14527517 intron Pde6 - chr3R_28_14525001 chr3R_14525001 RAL-819 2981 chr3R 14533586 14533588 chr3R 14533686 14533693 4 104 0.0 27.0 13.5 0.3 107 chr3R 14533586 intron Pde6 - chr3R 14533640 intron Pde6 - chr3R 14533693 intron Pde6 - chr3R_4_14530001 chr3R_14530001 RAL-819 2982 chr3R 14608436 14608477 chr3R 14608553 14608594 28 116 6.5 15.5 11.0 2.3 158 chr3R 14608436 intergenic stumps + chr3R 14608515 intergenic stumps + chr3R 14608594 intergenic not near genes chr3R_28_14605001 chr3R_14605001 RAL-819 2983 chr3R 14634424 14634431 chr3R 14634544 14634551 4 119 34.5 12.5 23.5 0.2 127 chr3R 14634424 intron,intron CG7886 -,Cad88C + chr3R 14634488 intron,intron CG7886 -,Cad88C + chr3R 14634551 intron,intron CG7886 -,Cad88C + chr3R_4_14630001 chr3R_14630001 RAL-819 2984 chr3R 14634433 14634491 chr3R 14634543 14634605 10 113 6.5 12.0 9.2 1.0 172 chr3R 14634433 intron,intron CG7886 -,Cad88C + chr3R 14634519 intron,intron CG7886 -,Cad88C + chr3R 14634605 intron,intron CG7886 -,Cad88C + chr3R_10_14630001 chr3R_14630001 RAL-819 2985 chr3R 14677568 14677572 chr3R 14677670 14677674 5 102 0.0 36.5 18.2 0.3 106 chr3R 14677568 intron Meltrin - chr3R 14677621 intron Meltrin - chr3R 14677674 intron Meltrin - chr3R_5_14675001 chr3R_14675001 RAL-819 2986 chr3R 14682884 14682893 chr3R 14682999 14683008 8 114 5.0 25.5 15.2 0.5 124 chr3R 14682884 intron Meltrin - chr3R 14682946 intron Meltrin - chr3R 14683008 intron Meltrin - chr3R_8_14680001 chr3R_14680001 RAL-819 2987 chr3R 14713816 14713856 chr3R 14714088 14714126 34 269 11.5 19.0 15.2 2.1 310 chr3R 14713816 intron kibra - chr3R 14713971 intron kibra - chr3R 14714126 intron kibra - chr3R_34_14710001 chr3R_14710001 RAL-819 2988 chr3R 14756612 14756659 chr3R 14756787 14756829 28 171 8.5 14.0 11.2 2.3 217 chr3R 14756612 intron jvl + chr3R 14756720 intron jvl + chr3R 14756829 intron jvl + chr3R_28_14755001 chr3R_14755001 RAL-819 2989 chr3R 14764544 14764590 chr3R 14764667 14764715 21 123 11.5 9.5 10.5 1.8 171 chr3R 14764544 intron jvl + chr3R 14764630 intron jvl + chr3R 14764715 intron jvl + chr3R_21_14760001 chr3R_14760001 RAL-819 2990 chr3R 14771888 14771932 chr3R 14771993 14772037 29 104 14.5 12.0 13.2 2.0 149 chr3R 14771888 intron jvl + chr3R 14771962 intron jvl + chr3R 14772037 intron jvl + chr3R_29_14770001 chr3R_14770001 RAL-819 2991 chr3R 14773464 14773497 chr3R 14773565 14773598 12 98 9.5 8.0 8.8 1.2 134 chr3R 14773464 intron jvl + chr3R 14773531 intron jvl + chr3R 14773598 intron jvl + chr3R_12_14770001 chr3R_14770001 RAL-819 2992 chr3R 14813547 14813575 chr3R 14814078 14814080 30 525 35.5 15.0 25.2 1.1 533 chr3R 14813547 intron btsz - chr3R 14813814 intron btsz - chr3R 14814080 intron btsz - chr3R_30_14810001 chr3R_14810001 RAL-819 2993 chr3R 14813577 14813603 chr3R 14814077 14814134 29 514 18.5 14.0 16.2 1.7 557 chr3R 14813577 intron btsz - chr3R 14813856 intron btsz - chr3R 14814134 intron btsz - chr3R_29_14810001 chr3R_14810001 RAL-819 2994 chr3R 14821589 14821647 chr3R 14821763 14821821 55 173 13.5 13.0 13.2 3.9 232 chr3R 14821589 intron btsz - chr3R 14821705 intron btsz - chr3R 14821821 intron btsz - chr3R_55_14820001 chr3R_14820001 RAL-819 2995 chr3R 14837266 14837275 chr3R 14837760 14837780 5 499 24.0 15.0 19.5 0.2 514 chr3R 14837266 intron btsz - chr3R 14837523 intron btsz - chr3R 14837780 intron btsz - chr3R_5_14835001 chr3R_14835001 RAL-819 2996 chr3R 14837276 14837311 chr3R 14837759 14837816 47 497 9.5 15.0 12.2 3.6 540 chr3R 14837276 intron btsz - chr3R 14837546 intron btsz - chr3R 14837816 intron btsz - chr3R_47_14835001 chr3R_14835001 RAL-819 2997 chr3R 14839436 14839488 chr3R 14839545 14839597 32 95 13.5 9.5 11.5 2.6 161 chr3R 14839436 intron btsz - chr3R 14839516 intron btsz - chr3R 14839597 intron btsz - chr3R_32_14835001 chr3R_14835001 RAL-819 2998 chr3R 14909711 14909761 chr3R 14910256 14910306 30 544 17.0 9.5 13.2 2.1 595 chr3R 14909711 intergenic not near genes chr3R 14910008 intergenic not near genes chr3R 14910306 intergenic not near genes chr3R_30_14910001 chr3R_14910001 RAL-819 2999 chr3R 14923688 14923745 chr3R 14923789 14923794 34 98 10.0 12.5 11.2 2.8 106 chr3R 14923688 3` UTR CR45598 - chr3R 14923741 3` UTR CR45598 - chr3R 14923794 intergenic CR45598 - chr3R_34_14920001 chr3R_14920001 RAL-819 3000 chr3R 14944877 14944895 chr3R 14944983 14945001 17 104 30.5 23.5 27.0 0.6 124 chr3R 14944877 intergenic not near genes chr3R 14944939 intergenic not near genes chr3R 14945001 intergenic not near genes chr3R_17_14940001 chr3R_14940001 RAL-819 3001 chr3R 14958287 14958340 chr3R 14958413 14958466 29 124 6.5 7.0 6.8 3.7 179 chr3R 14958287 intergenic not near genes chr3R 14958376 intergenic not near genes chr3R 14958466 intergenic not near genes chr3R_29_14955001 chr3R_14955001 RAL-819 3002 chr3R 15041399 15041417 chr3R 15045208 15045226 Doc 12 3808 0.0 15.0 7.5 1.4 3827 chr3R 15041399 intergenic not near genes chr3R 15043312 intergenic not near genes chr3R 15045226 intergenic not near genes chr3R_12_15040001 chr3R_15040001 RAL-819 3003 chr3R 15041418 15041419 chr3R 15045192 15045228 Doc 4 3800 0.0 10.5 5.2 0.6 3810 chr3R 15041418 intergenic not near genes chr3R 15043323 intergenic not near genes chr3R 15045228 intergenic not near genes chr3R_4_15040001 chr3R_15040001 RAL-819 3004 chr3R 15059252 15059481 chr3R 15059471 15059580 BS 34 192 0.0 0.0 0.0 34.0 328 chr3R 15059252 intron dpr9 - chr3R 15059416 intron dpr9 - chr3R 15059580 intron dpr9 - chr3R_34_15055001 chr3R_15055001 RAL-819 3005 chr3R 15078327 15078374 chr3R 15078432 15078479 39 103 8.0 16.0 12.0 3.0 152 chr3R 15078327 intergenic CG6974 - chr3R 15078403 intergenic CG6974 - chr3R 15078479 intergenic CG6974 - chr3R_39_15075001 chr3R_15075001 RAL-819 3006 chr3R 15079785 15079821 chr3R 15080051 15080087 pogo 33 265 20.5 0.5 10.5 2.9 302 chr3R 15079785 3` UTR CG6966 - chr3R 15079936 3` UTR CG6966 - chr3R 15080087 3` UTR CG6966 - chr3R_33_15075001 chr3R_15075001 RAL-819 3007 chr3R 15088074 15088096 chr3R 15088197 15088197 6 116 14.5 8.0 11.2 0.5 123 chr3R 15088074 intron CG6966 - chr3R 15088136 intron CG6966 - chr3R 15088197 intron CG6966 - chr3R_6_15085001 chr3R_15085001 RAL-819 3008 chr3R 15102469 15102527 chr3R 15109751 15109807 412 46 7280 13.5 12.5 13.0 3.3 7338 chr3R 15102469 intron CG42788 - chr3R 15106138 intron CG42788 - chr3R 15109807 intron CG42788 - chr3R_46_15105001 chr3R_15105001 RAL-819 3009 chr3R 15114893 15114930 chr3R 15114995 15115032 31 102 21.0 10.0 15.5 1.9 139 chr3R 15114893 intron CG42788 - chr3R 15114962 intron CG42788 - chr3R 15115032 intron CG42788 - chr3R_31_15110001 chr3R_15110001 RAL-819 3010 chr3R 15127757 15127811 chr3R 15127862 15127901 28 104 8.5 9.0 8.8 2.9 144 chr3R 15127757 intron CG42788 - chr3R 15127829 intron CG42788 - chr3R 15127901 intron CG42788 - chr3R_28_15125001 chr3R_15125001 RAL-819 3011 chr3R 15132046 15132082 chr3R 15135125 15135135 Juan 32 3082 22.5 20.0 21.2 1.4 3089 chr3R 15132046 intergenic CG42788 - chr3R 15133590 intergenic not near genes chr3R 15135135 intergenic CG6912 - chr3R_32_15130001 chr3R_15130001 RAL-819 3012 chr3R 15162519 15162553 chr3R 15167312 15167334 F-element 18 4792 21.5 5.5 13.5 1.2 4815 chr3R 15162519 intron Gyc88E + chr3R 15164926 intron Gyc88E + chr3R 15167334 intron Gyc88E + chr3R_18_15160001 chr3R_15160001 RAL-819 3013 chr3R 15286987 15286989 chr3R 21907534 21907534 14 6620548 61.0 63.0 62.0 0.2 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_14_18595001 chr3R_18595001 RAL-819 3014 chr3R 15407851 15407872 chr3R 15408092 15408113 25 238 26.5 14.0 20.2 1.2 262 chr3R 15407851 intergenic not near genes chr3R 15407982 intergenic not near genes chr3R 15408113 intergenic not near genes chr3R_25_15405001 chr3R_15405001 RAL-819 3015 chr3R 15407873 15407904 chr3R 15408089 15408136 25 232 13.5 11.5 12.5 1.9 263 chr3R 15407873 intergenic not near genes chr3R 15408004 intergenic not near genes chr3R 15408136 intergenic not near genes chr3R_25_15405001 chr3R_15405001 RAL-819 3016 chr3R 15416231 15416279 chr3R 15416332 15416384 50 103 10.5 15.0 12.8 3.6 153 chr3R 15416231 3` UTR Atx2 + chr3R 15416308 3` UTR Atx2 + chr3R 15416384 3` UTR Atx2 + chr3R_50_15415001 chr3R_15415001 RAL-819 3017 chr3R 15445885 15445905 chr3R 15445995 15446014 13 110 13.0 6.0 9.5 1.2 129 chr3R 15445885 exon AdamTS-A - chr3R 15445950 intron AdamTS-A - chr3R 15446014 intron AdamTS-A - chr3R_13_15445001 chr3R_15445001 RAL-819 3018 chr3R 15517576 15517581 chr3R 15517684 15517688 6 108 27.0 7.5 17.2 0.3 112 chr3R 15517576 intergenic not near genes chr3R 15517632 intergenic not near genes chr3R 15517688 intergenic not near genes chr3R_6_15515001 chr3R_15515001 RAL-819 3019 chr3R 15517583 15517632 chr3R 15517683 15517687 29 102 8.5 7.5 8.0 3.2 104 chr3R 15517583 intergenic not near genes chr3R 15517635 intergenic not near genes chr3R 15517687 intergenic not near genes chr3R_29_15515001 chr3R_15515001 RAL-819 3020 chr3R 15570120 15570144 chr3R 15570235 15570259 17 113 26.5 1.0 13.8 1.1 139 chr3R 15570120 intergenic not near genes chr3R 15570190 intergenic not near genes chr3R 15570259 intergenic not near genes chr3R_17_15570001 chr3R_15570001 RAL-819 3021 chr3R 15601145 15601196 chr3R 15608692 15608761 412 35 7554 16.0 0.5 8.2 3.8 7616 chr3R 15601145 intergenic not near genes chr3R 15604953 intergenic not near genes chr3R 15608761 intergenic not near genes chr3R_35_15600001 chr3R_15600001 RAL-819 3022 chr3R 15618715 15618761 chr3R 15626207 15626260 blood 36 7497 7.5 11.0 9.2 3.5 7545 chr3R 15618715 intergenic not near genes chr3R 15622488 intergenic not near genes chr3R 15626260 intergenic not near genes chr3R_36_15620001 chr3R_15620001 RAL-819 3023 chr3R 15635183 15635239 chr3R 15635329 15635376 23 143 0.0 12.0 6.0 3.3 193 chr3R 15635183 intergenic CG43335 + chr3R 15635280 intergenic CG43335 + chr3R 15635376 intergenic CG43335 + chr3R_23_15635001 chr3R_15635001 RAL-819 3024 chr3R 15646764 15646797 chr3R 15646872 15646905 16 108 12.0 13.5 12.8 1.2 141 chr3R 15646764 intergenic not near genes chr3R 15646834 intergenic not near genes chr3R 15646905 intergenic not near genes chr3R_16_15645001 chr3R_15645001 RAL-819 3025 chr3R 15650820 15650848 chr3R 15650895 15650950 19 86 7.5 12.0 9.8 1.8 130 chr3R 15650820 intergenic not near genes chr3R 15650885 intergenic not near genes chr3R 15650950 intergenic not near genes chr3R_19_15650001 chr3R_15650001 RAL-819 3026 chr3R 15691155 15691330 chr3R 15691285 15691442 47 119 0.0 0.0 0.0 47.0 287 chr3R 15691155 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691442 intergenic not near genes chr3R_47_15690001 chr3R_15690001 RAL-819 3027 chr3R 15734171 15734197 chr3R 15734261 15734297 32 111 20.5 19.5 20.0 1.5 126 chr3R 15734171 intergenic not near genes chr3R 15734234 intergenic not near genes chr3R 15734297 intergenic not near genes chr3R_32_15730001 chr3R_15730001 RAL-819 3028 chr3R 15735221 15735234 chr3R 15739966 15739979 F-element 6 4745 8.5 14.0 11.2 0.5 4758 chr3R 15735221 intergenic not near genes chr3R 15737600 intergenic not near genes chr3R 15739979 intergenic not near genes chr3R_6_15735001 chr3R_15735001 RAL-819 3029 chr3R 15766321 15766345 chr3R 15766463 15766487 19 139 31.0 15.0 23.0 0.8 166 chr3R 15766321 3` UTR CG5623 - chr3R 15766404 3` UTR CG5623 - chr3R 15766487 exon CG5623 - chr3R_19_15765001 chr3R_15765001 RAL-819 3030 chr3R 15766347 15766376 chr3R 15766459 15766504 32 135 11.5 13.0 12.2 2.4 157 chr3R 15766347 3` UTR CG5623 - chr3R 15766426 3` UTR CG5623 - chr3R 15766504 exon CG5623 - chr3R_32_15765001 chr3R_15765001 RAL-819 3031 chr3R 15864029 15864066 chr3R 15864218 15864250 11 190 11.5 0.0 5.8 1.6 221 chr3R 15864029 intron CG31183 - chr3R 15864140 intron CG31183 - chr3R 15864250 intron CG31183 - chr3R_11_15860001 chr3R_15860001 RAL-819 3032 chr3R 15892631 15892686 chr3R 15892737 15892792 49 104 14.5 13.5 14.0 3.3 161 chr3R 15892631 intron CG14877 - chr3R 15892712 intron CG14877 - chr3R 15892792 intron CG14877 - chr3R_49_15890001 chr3R_15890001 RAL-819 3033 chr3R 15962410 15962460 chr3R 15962526 15962576 18 112 8.5 13.5 11.0 1.5 166 chr3R 15962410 3` UTR CG4287 - chr3R 15962493 3` UTR CG4287 - chr3R 15962576 exon CG4287 - chr3R_18_15960001 chr3R_15960001 RAL-819 3034 chr3R 16048832 16048859 chr3R 16048947 16048958 17 109 27.5 24.0 25.8 0.6 126 chr3R 16048832 intron ird5 - chr3R 16048895 intron ird5 - chr3R 16048958 intron ird5 - chr3R_17_16045001 chr3R_16045001 RAL-819 3035 chr3R 16048860 16048882 chr3R 16048945 16048981 17 107 11.0 22.5 16.8 1.0 121 chr3R 16048860 intron ird5 - chr3R 16048920 intron ird5 - chr3R 16048981 intron ird5 - chr3R_17_16045001 chr3R_16045001 RAL-819 3036 chr3R 16073414 16073429 chr3R 16073543 16073558 11 129 32.5 6.0 19.2 0.5 144 chr3R 16073414 intron Mhcl - chr3R 16073486 intron Mhcl - chr3R 16073558 intron Mhcl - chr3R_11_16070001 chr3R_16070001 RAL-819 3037 chr3R 16073434 16073475 chr3R 16073542 16073604 22 128 9.5 5.5 7.5 2.6 170 chr3R 16073434 intron Mhcl - chr3R 16073519 intron Mhcl - chr3R 16073604 intron Mhcl - chr3R_22_16070001 chr3R_16070001 RAL-819 3038 chr3R 16195528 16195581 chr3R 16195774 16195827 37 245 15.0 9.5 12.2 2.8 299 chr3R 16195528 intron sra + chr3R 16195678 intron sra + chr3R 16195827 intron sra + chr3R_37_16195001 chr3R_16195001 RAL-819 3039 chr3R 16225062 16225118 chr3R 16225172 16225228 34 109 8.0 8.0 8.0 3.8 166 chr3R 16225062 intergenic not near genes chr3R 16225145 intergenic not near genes chr3R 16225228 intergenic tara + chr3R_34_16225001 chr3R_16225001 RAL-819 3040 chr3R 16246522 16246557 chr3R 16246623 16246658 16 101 6.0 23.5 14.8 1.0 136 chr3R 16246522 intron tara + chr3R 16246590 intron tara + chr3R 16246658 intron tara + chr3R_16_16245001 chr3R_16245001 RAL-819 3041 chr3R 16253510 16253572 chr3R 16253621 16253682 21 111 0.0 6.5 3.2 5.0 172 chr3R 16253510 intron tara + chr3R 16253596 intron tara + chr3R 16253682 intron tara + chr3R_21_16250001 chr3R_16250001 RAL-819 3042 chr3R 16374274 16374322 chr3R 16374416 16374452 38 140 12.5 12.5 12.5 2.8 178 chr3R 16374274 intergenic ss - chr3R 16374363 intergenic ss - chr3R 16374452 3` UTR ss - chr3R_38_16370001 chr3R_16370001 RAL-819 3043 chr3R 16472556 16472575 chr3R 16472657 16472676 18 100 37.0 16.0 26.5 0.7 120 chr3R 16472556 intergenic Gyc-89Da + chr3R 16472616 5` UTR Gyc-89Da + chr3R 16472676 5` UTR Gyc-89Da + chr3R_18_16470001 chr3R_16470001 RAL-819 3044 chr3R 16472577 16472597 chr3R 16472655 16472683 17 92 27.0 16.0 21.5 0.8 106 chr3R 16472577 intergenic Gyc-89Da + chr3R 16472630 5` UTR Gyc-89Da + chr3R 16472683 5` UTR Gyc-89Da + chr3R_17_16470001 chr3R_16470001 RAL-819 3045 chr3R 16491932 16491933 chr3R 16500643 16500655 13 8714 85.5 101.5 93.5 0.1 8723 chr3R 16491932 exon Cad89D - chr3R 16496294 intergenic not near genes chr3R 16500655 intron decay - chr3R_13_16495001 chr3R_16495001 RAL-819 3046 chr3R 16491930 16491979 chr3R 16500658 16500695 32 8714 105.5 97.5 101.5 0.3 8765 chr3R 16491930 exon Cad89D - chr3R 16496312 intergenic not near genes chr3R 16500695 exon decay - chr3R_32_16495001 chr3R_16495001 RAL-819 3047 chr3R 16519909 16519921 chr3R 16520027 16520039 12 116 31.5 10.5 21.0 0.5 130 chr3R 16519909 intron CG42342 + chr3R 16519974 intron CG42342 + chr3R 16520039 intron CG42342 + chr3R_12_16515001 chr3R_16515001 RAL-819 3048 chr3R 16519924 16519932 chr3R 16520021 16520050 9 112 28.5 8.5 18.5 0.5 126 chr3R 16519924 intron CG42342 + chr3R 16519987 intron CG42342 + chr3R 16520050 intron CG42342 + chr3R_9_16515001 chr3R_16515001 RAL-819 3049 chr3R 16582882 16582919 chr3R 16582986 16583018 35 100 20.5 22.0 21.2 1.6 136 chr3R 16582882 intron Scp2 - chr3R 16582950 intron Scp2 - chr3R 16583018 intron Scp2 - chr3R_35_16580001 chr3R_16580001 RAL-819 3050 chr3R 16633671 16633684 chr3R 16633796 16633809 11 125 27.5 32.0 29.8 0.4 138 chr3R 16633671 intron Fas1 + chr3R 16633740 intron Fas1 + chr3R 16633809 intron Fas1 + chr3R_11_16630001 chr3R_16630001 RAL-819 3051 chr3R 16731937 16731946 chr3R 16732014 16732021 5 88 10.0 11.0 10.5 0.4 84 chr3R 16731937 intron Ubx - chr3R 16731979 intron Ubx - chr3R 16732021 intron Ubx - chr3R_5_16730001 chr3R_16730001 RAL-819 3052 chr3R 16756294 16756352 chr3R 16762510 16762568 diver 34 6214 14.0 7.0 10.5 3.0 6274 chr3R 16756294 intron bxd - chr3R 16759431 intron bxd - chr3R 16762568 intron bxd - chr3R_34_16755001 chr3R_16755001 RAL-819 3053 chr3R 16885459 16885513 chr3R 16885627 16885681 46 164 11.0 13.5 12.2 3.5 222 chr3R 16885459 intron iab-8 - chr3R 16885570 intron iab-8 - chr3R 16885681 intron iab-8 - chr3R_46_16885001 chr3R_16885001 RAL-819 3054 chr3R 17123241 17123247 chr3R 17123626 17123641 10 389 19.5 20.5 20.0 0.5 400 chr3R 17123241 intron cher - chr3R 17123441 intron cher - chr3R 17123641 intron cher - chr3R_10_17120001 chr3R_17120001 RAL-819 3055 chr3R 17123253 17123285 chr3R 17123621 17123679 28 387 9.5 17.0 13.2 2.0 426 chr3R 17123253 intron cher - chr3R 17123466 intron cher - chr3R 17123679 intron cher - chr3R_28_17120001 chr3R_17120001 RAL-819 3056 chr3R 17165987 17166013 chr3R 17166262 17166288 7 274 17.5 0.0 8.8 0.7 301 chr3R 17165987 intron Mur89F - chr3R 17166138 intron Mur89F - chr3R 17166288 intron Mur89F - chr3R_7_17165001 chr3R_17165001 RAL-819 3057 chr3R 17208840 17208868 chr3R 17208940 17208947 8 94 20.5 0.0 10.2 0.7 107 chr3R 17208840 intergenic not near genes chr3R 17208894 intergenic not near genes chr3R 17208947 intergenic not near genes chr3R_8_17205001 chr3R_17205001 RAL-819 3058 chr3R 17209683 17209709 chr3R 17209796 17209807 22 112 21.0 28.0 24.5 0.9 124 chr3R 17209683 intergenic not near genes chr3R 17209745 intergenic not near genes chr3R 17209807 intergenic not near genes chr3R_22_17205001 chr3R_17205001 RAL-819 3059 chr3R 17213996 17214057 chr3R 17214097 17214158 59 100 9.0 7.5 8.2 6.4 162 chr3R 17213996 intergenic not near genes chr3R 17214077 intergenic not near genes chr3R 17214158 intergenic not near genes chr3R_59_17210001 chr3R_17210001 RAL-819 3060 chr3R 17218438 17218476 chr3R 17218603 17218641 26 161 19.0 14.0 16.5 1.5 203 chr3R 17218438 exon CG31262 - chr3R 17218540 intron CG31262 - chr3R 17218641 exon CG31262 - chr3R_26_17215001 chr3R_17215001 RAL-819 3061 chr3R 17218477 17218496 chr3R 17218602 17218606 34 153 10.5 13.5 12.0 2.6 129 chr3R 17218477 exon CG31262 - chr3R 17218542 intron CG31262 - chr3R 17218606 exon CG31262 - chr3R_34_17215001 chr3R_17215001 RAL-819 3062 chr3R 17268648 17268701 chr3R 17268795 17268848 35 146 10.5 10.0 10.2 3.1 200 chr3R 17268648 intergenic not near genes chr3R 17268748 intergenic not near genes chr3R 17268848 intergenic not near genes chr3R_35_17265001 chr3R_17265001 RAL-819 3063 chr3R 17294647 17294695 chr3R 17295100 17295148 BS 37 452 13.0 19.0 16.0 2.2 501 chr3R 17294647 intergenic not near genes chr3R 17294898 intergenic not near genes chr3R 17295148 intergenic not near genes chr3R_37_17290001 chr3R_17290001 RAL-819 3064 chr3R 17335143 17335167 chr3R 17335234 17335268 24 98 21.0 13.0 17.0 1.3 125 chr3R 17335143 intron beat-IIa - chr3R 17335206 intron beat-IIa - chr3R 17335268 intron beat-IIa - chr3R_24_17335001 chr3R_17335001 RAL-819 3065 chr3R 17335168 17335187 chr3R 17335233 17335287 11 87 13.0 13.5 13.2 0.8 119 chr3R 17335168 intron beat-IIa - chr3R 17335228 intron beat-IIa - chr3R 17335287 intron beat-IIa - chr3R_11_17335001 chr3R_17335001 RAL-819 3066 chr3R 17355467 17355523 chr3R 17355567 17355626 55 97 15.5 14.0 14.8 3.5 159 chr3R 17355467 intron beat-IIa - chr3R 17355546 intron beat-IIa - chr3R 17355626 intron beat-IIa - chr3R_55_17355001 chr3R_17355001 RAL-819 3067 chr3R 17380563 17380616 chr3R 17380763 17380816 33 198 9.5 7.5 8.5 3.5 253 chr3R 17380563 intron,intron Brf -,lute + chr3R 17380690 intron,intron Brf -,lute + chr3R 17380816 intron,intron Brf -,lute + chr3R_33_17380001 chr3R_17380001 RAL-819 3068 chr3R 17406977 17407028 chr3R 17407104 17407155 35 126 11.0 9.5 10.2 3.1 178 chr3R 17406977 intron CG42798 + chr3R 17407066 5` UTR CG42798 + chr3R 17407155 exon CG42798 + chr3R_35_17405001 chr3R_17405001 RAL-819 3069 chr3R 17450244 17450254 chr3R 17450358 17450360 6 114 29.0 13.5 21.2 0.3 116 chr3R 17450244 intergenic not near genes chr3R 17450302 intergenic not near genes chr3R 17450360 intergenic not near genes chr3R_6_17450001 chr3R_17450001 RAL-819 3070 chr3R 17450255 17450298 chr3R 17450356 17450364 31 109 11.0 12.0 11.5 2.5 109 chr3R 17450255 intergenic not near genes chr3R 17450310 intergenic not near genes chr3R 17450364 intergenic not near genes chr3R_31_17450001 chr3R_17450001 RAL-819 3071 chr3R 17454071 17454128 chr3R 17454318 17454375 57 243 7.0 12.0 9.5 5.4 304 chr3R 17454071 intergenic not near genes chr3R 17454223 intergenic not near genes chr3R 17454375 intergenic not near genes chr3R_57_17450001 chr3R_17450001 RAL-819 3072 chr3R 17463231 17463247 chr3R 17463540 17463557 10 310 22.5 11.0 16.8 0.6 326 chr3R 17463231 intergenic not near genes chr3R 17463394 intergenic not near genes chr3R 17463557 intergenic not near genes chr3R_10_17460001 chr3R_17460001 RAL-819 3073 chr3R 17463250 17463287 chr3R 17463539 17463597 35 308 9.5 10.5 10.0 3.2 347 chr3R 17463250 intergenic not near genes chr3R 17463424 intergenic not near genes chr3R 17463597 intergenic not near genes chr3R_35_17460001 chr3R_17460001 RAL-819 3074 chr3R 17497937 17497991 chr3R 17498048 17498098 44 110 7.5 11.5 9.5 4.2 161 chr3R 17497937 intron Dscam3 - chr3R 17498018 intron Dscam3 - chr3R 17498098 intron Dscam3 - chr3R_44_17495001 chr3R_17495001 RAL-819 3075 chr3R 17500580 17500631 chr3R 17500736 17500787 40 155 10.0 14.5 12.2 3.0 207 chr3R 17500580 intron Dscam3 - chr3R 17500684 intron Dscam3 - chr3R 17500787 intron Dscam3 - chr3R_40_17500001 chr3R_17500001 RAL-819 3076 chr3R 17509231 17509244 chr3R 17516804 17516817 412 10 7572 23.0 36.0 29.5 0.3 7586 chr3R 17509231 intergenic not near genes chr3R 17513024 intergenic not near genes chr3R 17516817 intergenic not near genes chr3R_10_17510001 chr3R_17510001 RAL-819 3077 chr3R 17517673 17517732 chr3R 17517802 17517848 35 121 13.0 17.5 15.2 2.2 175 chr3R 17517673 intergenic not near genes chr3R 17517760 intergenic CR44349 - chr3R 17517848 intergenic CR44349 - chr3R_35_17515001 chr3R_17515001 RAL-819 3078 chr3R 17591268 17591286 chr3R 17591729 17591747 F-element 12 459 27.5 15.0 21.2 0.5 479 chr3R 17591268 intergenic not near genes chr3R 17591508 intergenic not near genes chr3R 17591747 intergenic not near genes chr3R_12_17590001 chr3R_17590001 RAL-819 3079 chr3R 17591288 17591299 chr3R 17591723 17591745 F-element 15 455 23.5 12.0 17.8 0.8 457 chr3R 17591288 intergenic not near genes chr3R 17591516 intergenic not near genes chr3R 17591745 intergenic not near genes chr3R_15_17590001 chr3R_17590001 RAL-819 3080 chr3R 17591300 17591321 chr3R 17591721 17591782 F-element 23 446 11.5 11.5 11.5 1.8 482 chr3R 17591300 intergenic not near genes chr3R 17591541 intergenic not near genes chr3R 17591782 intergenic not near genes chr3R_23_17590001 chr3R_17590001 RAL-819 3081 chr3R 17624947 17624972 chr3R 17625048 17625073 23 101 17.5 11.5 14.5 1.5 126 chr3R 17624947 intergenic AttD + chr3R 17625010 intergenic AttD + chr3R 17625073 intergenic AttD + chr3R_23_17625001 chr3R_17625001 RAL-819 3082 chr3R 17638333 17638339 chr3R 17638844 17638850 roo 5 511 1.5 28.0 14.8 0.3 517 chr3R 17638333 intron CG43175 + chr3R 17638592 intron CG43175 + chr3R 17638850 intron,intron CG43175 +,CR45222 + chr3R_5_17635001 chr3R_17635001 RAL-819 3083 chr3R 17657463 17657508 chr3R 17657604 17657629 23 132 10.0 6.5 8.2 2.5 166 chr3R 17657463 intron CG14322 + chr3R 17657546 intron CG14322 + chr3R 17657629 intron CG14322 + chr3R_23_17655001 chr3R_17655001 RAL-819 3084 chr3R 17734821 17734860 chr3R 17734960 17734999 27 139 12.5 11.0 11.8 2.1 178 chr3R 17734821 intergenic CG14321 + chr3R 17734910 intergenic not near genes chr3R 17734999 intergenic not near genes chr3R_27_17730001 chr3R_17730001 RAL-819 3085 chr3R 17749073 17749088 chr3R 17749149 17749186 9 91 12.5 5.0 8.8 0.9 113 chr3R 17749073 intergenic not near genes chr3R 17749130 intergenic not near genes chr3R 17749186 intergenic not near genes chr3R_9_17745001 chr3R_17745001 RAL-819 3086 chr3R 17765463 17765520 chr3R 17765651 17765708 57 184 8.5 15.0 11.8 4.5 245 chr3R 17765463 intergenic not near genes chr3R 17765586 intergenic not near genes chr3R 17765708 intergenic not near genes chr3R_57_17765001 chr3R_17765001 RAL-819 3087 chr3R 17811171 17811217 chr3R 17811276 17811291 23 104 15.0 0.0 7.5 2.7 120 chr3R 17811171 intergenic CG18012 -,tinc + chr3R 17811231 intergenic CG18012 -,tinc + chr3R 17811291 intergenic CG18012 -,tinc + chr3R_23_17810001 chr3R_17810001 RAL-819 3088 chr3R 17823183 17823214 chr3R 17823293 17823324 23 110 14.5 13.5 14.0 1.5 141 chr3R 17823183 intron tinc + chr3R 17823254 intron tinc + chr3R 17823324 intron tinc + chr3R_23_17820001 chr3R_17820001 RAL-819 3089 chr3R 17825891 17825932 chr3R 17825995 17826039 8 104 0.0 9.5 4.8 1.4 148 chr3R 17825891 intron tinc + chr3R 17825965 intron tinc + chr3R 17826039 intron tinc + chr3R_8_17825001 chr3R_17825001 RAL-819 3090 chr3R 17845092 17845216 chr3R 17845205 17845318 13 99 1.5 0.5 1.0 6.5 226 chr3R 17845092 intron tinc + chr3R 17845205 intron tinc + chr3R 17845318 intron tinc + chr3R_13_17845001 chr3R_17845001 RAL-819 3091 chr3R 17856018 17856043 chr3R 17856143 17856149 13 122 23.0 8.5 15.8 0.8 131 chr3R 17856018 intron tinc + chr3R 17856084 intron tinc + chr3R 17856149 intron tinc + chr3R_13_17855001 chr3R_17855001 RAL-819 3092 chr3R 17871531 17871585 chr3R 17878687 17878719 30 7137 80.5 74.0 77.2 0.4 7188 chr3R 17871531 3` UTR tinc + chr3R 17875125 3` UTR Rim - chr3R 17878719 intron Rim - chr3R_30_17875001 chr3R_17875001 RAL-819 3093 chr3R 17898347 17898360 chr3R 17898454 17898467 8 106 14.5 36.0 25.2 0.3 120 chr3R 17898347 intron Rim - chr3R 17898407 intron Rim - chr3R 17898467 intron Rim - chr3R_8_17895001 chr3R_17895001 RAL-819 3094 chr3R 17899067 17899088 chr3R 17899170 17899181 18 102 14.5 11.0 12.8 1.3 114 chr3R 17899067 intron Rim - chr3R 17899124 intron Rim - chr3R 17899181 intron Rim - chr3R_18_17895001 chr3R_17895001 RAL-819 3095 chr3R 17925832 17925863 chr3R 17927324 17927347 hobo 30 1491 20.5 19.0 19.8 1.4 1515 chr3R 17925832 intron cpo + chr3R 17926590 intron cpo + chr3R 17927347 intron cpo + chr3R_30_17925001 chr3R_17925001 RAL-819 3096 chr3R 17925864 17925887 chr3R 17927321 17927349 hobo 16 1484 12.5 18.5 15.5 1.0 1485 chr3R 17925864 intron cpo + chr3R 17926606 intron cpo + chr3R 17927349 intron cpo + chr3R_16_17925001 chr3R_17925001 RAL-819 3097 chr3R 17964200 17964257 chr3R 17964331 17964388 46 127 9.5 7.0 8.2 5.0 188 chr3R 17964200 intron cpo + chr3R 17964294 intron cpo + chr3R 17964388 intron cpo + chr3R_46_17960001 chr3R_17960001 RAL-819 3098 chr3R 17993716 17993739 chr3R 17993836 17993863 12 120 20.5 5.0 12.8 0.9 147 chr3R 17993716 intron cpo + chr3R 17993790 intron cpo + chr3R 17993863 intron cpo + chr3R_12_17990001 chr3R_17990001 RAL-819 3099 chr3R 18030988 18031030 chr3R 18031220 18031262 33 230 13.0 12.5 12.8 2.4 274 chr3R 18030988 intergenic not near genes chr3R 18031125 intergenic not near genes chr3R 18031262 intergenic not near genes chr3R_33_18030001 chr3R_18030001 RAL-819 3100 chr3R 18031031 18031039 chr3R 18031219 18031271 12 225 11.0 11.5 11.2 1.0 240 chr3R 18031031 intergenic not near genes chr3R 18031151 intergenic not near genes chr3R 18031271 intergenic not near genes chr3R_12_18030001 chr3R_18030001 RAL-819 3101 chr3R 18032754 18032809 chr3R 18040452 18040467 opus 11 7694 0.0 9.0 4.5 2.0 7713 chr3R 18032754 intergenic not near genes chr3R 18036610 intergenic not near genes chr3R 18040467 intergenic not near genes chr3R_11_18035001 chr3R_18035001 RAL-819 3102 chr3R 18061566 18061575 chr3R 18063159 18063168 F-element 4 1593 27.5 16.5 22.0 0.2 1602 chr3R 18061566 intergenic not near genes chr3R 18062367 intergenic not near genes chr3R 18063168 intergenic not near genes chr3R_4_18060001 chr3R_18060001 RAL-819 3103 chr3R 18061577 18061582 chr3R 18063155 18063175 F-element 5 1589 24.5 14.5 19.5 0.2 1598 chr3R 18061577 intergenic not near genes chr3R 18062376 intergenic not near genes chr3R 18063175 intergenic not near genes chr3R_5_18060001 chr3R_18060001 RAL-819 3104 chr3R 18061585 18061608 chr3R 18063150 18063189 F-element 19 1590 12.5 12.0 12.2 1.4 1604 chr3R 18061585 intergenic not near genes chr3R 18062387 intergenic not near genes chr3R 18063189 intergenic not near genes chr3R_19_18060001 chr3R_18060001 RAL-819 3105 chr3R 18078137 18078183 chr3R 18078236 18078287 45 102 13.5 14.0 13.8 3.0 150 chr3R 18078137 intergenic not near genes chr3R 18078212 intergenic not near genes chr3R 18078287 intergenic not near genes chr3R_45_18075001 chr3R_18075001 RAL-819 3106 chr3R 18098274 18098283 chr3R 18098376 18098385 8 102 14.0 26.5 20.2 0.4 111 chr3R 18098274 intron sr + chr3R 18098330 intron sr + chr3R 18098385 intron sr + chr3R_8_18095001 chr3R_18095001 RAL-819 3107 chr3R 18098284 18098290 chr3R 18098375 18098392 6 100 10.5 26.0 18.2 0.3 108 chr3R 18098284 intron sr + chr3R 18098338 intron sr + chr3R 18098392 intron sr + chr3R_6_18095001 chr3R_18095001 RAL-819 3108 chr3R 18107120 18107137 chr3R 18107228 18107245 11 108 0.0 20.0 10.0 1.0 125 chr3R 18107120 intron sr + chr3R 18107182 intron sr + chr3R 18107245 intron sr + chr3R_11_18105001 chr3R_18105001 RAL-819 3109 chr3R 18117393 18117438 chr3R 18117494 18117539 11 99 9.0 14.5 11.8 0.9 146 chr3R 18117393 intron sr + chr3R 18117466 intron sr + chr3R 18117539 intron sr + chr3R_11_18115001 chr3R_18115001 RAL-819 3110 chr3R 18119725 18119753 chr3R 18119821 18119855 10 100 4.5 12.5 8.5 1.1 130 chr3R 18119725 intron sr + chr3R 18119790 intron sr + chr3R 18119855 intron sr + chr3R_10_18115001 chr3R_18115001 RAL-819 3111 chr3R 18122875 18122916 chr3R 18122977 18123018 21 102 5.0 9.5 7.2 2.6 143 chr3R 18122875 intron sr + chr3R 18122946 intron sr + chr3R 18123018 intron sr + chr3R_21_18120001 chr3R_18120001 RAL-819 3112 chr3R 18136209 18136255 chr3R 18136348 18136383 34 138 7.0 9.5 8.2 3.7 174 chr3R 18136209 intergenic not near genes chr3R 18136296 intergenic not near genes chr3R 18136383 intergenic not near genes chr3R_34_18135001 chr3R_18135001 RAL-819 3113 chr3R 18203689 18203727 chr3R 18203791 18203829 34 99 22.5 16.5 19.5 1.7 140 chr3R 18203689 intron CG7985 + chr3R 18203759 intron CG7985 + chr3R 18203829 intron CG7985 + chr3R_34_18200001 chr3R_18200001 RAL-819 3114 chr3R 18235187 18235240 chr3R 18235388 18235441 65 192 15.0 13.0 14.0 4.3 254 chr3R 18235187 intergenic not near genes chr3R 18235314 intergenic not near genes chr3R 18235441 intergenic not near genes chr3R_65_18235001 chr3R_18235001 RAL-819 3115 chr3R 18235241 18235245 chr3R 18235387 18235446 9 190 13.0 12.0 12.5 0.7 205 chr3R 18235241 intergenic not near genes chr3R 18235344 intergenic not near genes chr3R 18235446 intergenic not near genes chr3R_9_18235001 chr3R_18235001 RAL-819 3116 chr3R 18281473 18281529 chr3R 18281598 18281654 43 120 14.5 13.0 13.8 2.9 181 chr3R 18281473 intron eIF-1A + chr3R 18281564 intron eIF-1A + chr3R 18281654 intron eIF-1A + chr3R_43_18280001 chr3R_18280001 RAL-819 3117 chr3R 18302979 18302981 chr3R 18303108 18303111 4 130 18.5 0.0 9.2 0.4 132 chr3R 18302979 intergenic CG7126 -,PKD - chr3R 18303045 intergenic CG7126 -,PKD - chr3R 18303111 intergenic PKD -,CG7126 - chr3R_4_18300001 chr3R_18300001 RAL-819 3118 chr3R 18328418 18328475 chr3R 18328521 18328578 42 95 18.5 12.0 15.2 2.6 160 chr3R 18328418 intron CG31235 - chr3R 18328498 intron CG31235 - chr3R 18328578 intron CG31235 - chr3R_42_18325001 chr3R_18325001 RAL-819 3119 chr3R 18331756 18331772 chr3R 18333275 18333285 hopper2 8 1518 30.0 12.5 21.2 0.4 1529 chr3R 18331756 3` UTR CG15803 - chr3R 18332520 intron CG15803 - chr3R 18333285 3` UTR CG15803 - chr3R_8_18330001 chr3R_18330001 RAL-819 3120 chr3R 18352552 18352598 chr3R 18352670 18352710 41 116 16.0 17.0 16.5 2.3 158 chr3R 18352552 intron CG15803 - chr3R 18352631 intron CG15803 - chr3R 18352710 intron CG15803 - chr3R_41_18350001 chr3R_18350001 RAL-819 3121 chr3R 18352599 18352609 chr3R 18352663 18352723 9 111 10.0 13.5 11.8 0.7 124 chr3R 18352599 intron CG15803 - chr3R 18352661 intron CG15803 - chr3R 18352723 intron CG15803 - chr3R_9_18350001 chr3R_18350001 RAL-819 3122 chr3R 18215573 18215632 chr3R 18377646 18377708 8 162076 0.0 54.5 27.2 0.3 162135 chr3R 18215573 intergenic not near genes chr3R 18296640 intron l(3)05822 - chr3R 18377708 intergenic CG7675 - chr3R_8_18295001 chr3R_18295001 RAL-819 3123 chr3R 18472258 18472297 chr3R 18472384 18472423 25 126 10.5 5.5 8.0 2.8 165 chr3R 18472258 intron fru - chr3R 18472340 intron fru - chr3R 18472423 intron fru - chr3R_25_18470001 chr3R_18470001 RAL-819 3124 chr3R 18473226 18473236 chr3R 18473332 18473348 5 111 0.0 0.0 0.0 5.0 122 chr3R 18473226 intron fru - chr3R 18473287 intron fru - chr3R 18473348 intron fru - chr3R_5_18470001 chr3R_18470001 RAL-819 3125 chr3R 18481168 18481210 chr3R 18481281 18481302 15 106 0.0 15.0 7.5 1.8 134 chr3R 18481168 intron fru - chr3R 18481235 intron fru - chr3R 18481302 intron fru - chr3R_15_18480001 chr3R_18480001 RAL-819 3126 chr3R 18500713 18500737 chr3R 18500858 18500883 18 144 10.5 30.0 20.2 0.8 170 chr3R 18500713 intron fru - chr3R 18500798 intron fru - chr3R 18500883 intron fru - chr3R_18_18500001 chr3R_18500001 RAL-819 3127 chr3R 13125668 13125670 chr3R 18549751 18549753 4 5424083 60.0 26.5 43.2 0.1 5424085 chr3R 13125668 intron,3` UTR timeout +,2mit - chr3R 15837710 intron spn-E + chr3R 18549753 intergenic not near genes chr3R_4_15835001 chr3R_15835001 RAL-819 3128 chr3R 18606479 18606488 chr3R 18610736 18610745 F-element 7 4257 38.5 14.5 26.5 0.3 4266 chr3R 18606479 intron,intron qin +,CG14304 - chr3R 18608612 intron,intron qin +,CG14304 - chr3R 18610745 intron,intron qin +,CG14304 - chr3R_7_18605001 chr3R_18605001 RAL-819 3129 chr3R 18606489 18606493 chr3R 18610735 18610750 F-element 4 4254 36.5 14.5 25.5 0.2 4261 chr3R 18606489 intron,intron qin +,CG14304 - chr3R 18608620 intron,intron qin +,CG14304 - chr3R 18610750 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-819 3130 chr3R 18606494 18606529 chr3R 18610734 18610786 F-element 27 4255 23.5 14.0 18.8 1.4 4292 chr3R 18606494 intron,intron qin +,CG14304 - chr3R 18608640 intron,intron qin +,CG14304 - chr3R 18610786 intron,intron qin +,CG14304 - chr3R_27_18605001 chr3R_18605001 RAL-819 3131 chr3R 18617688 18617739 chr3R 18617793 18617844 37 104 7.5 10.5 9.0 3.7 156 chr3R 18617688 intron,intron qin +,CG14304 - chr3R 18617766 intron,intron qin +,CG14304 - chr3R 18617844 intron,intron qin +,CG14304 - chr3R_37_18615001 chr3R_18615001 RAL-819 3132 chr3R 18695736 18695749 chr3R 18695845 18695858 20 108 24.5 0.0 12.2 1.5 122 chr3R 18695736 3` UTR CG34282 + chr3R 18695797 intergenic CG34282 + chr3R 18695858 intergenic CG34282 + chr3R_20_18695001 chr3R_18695001 RAL-819 3133 chr3R 18720295 18720341 chr3R 18720402 18720462 42 118 12.0 14.5 13.2 3.0 167 chr3R 18720295 intron Cha + chr3R 18720378 intron Cha + chr3R 18720462 intron Cha + chr3R_42_18720001 chr3R_18720001 RAL-819 3134 chr3R 18781668 18781723 chr3R 18781767 18781824 26 97 16.5 15.0 15.8 1.5 156 chr3R 18781668 intron CG7720 - chr3R 18781746 intron CG7720 - chr3R 18781824 intron CG7720 - chr3R_26_18780001 chr3R_18780001 RAL-819 3135 chr3R 18839787 18839838 chr3R 18839896 18839947 40 106 11.0 13.5 12.2 3.0 160 chr3R 18839787 intron CG18208 - chr3R 18839867 intron CG18208 - chr3R 18839947 intron CG18208 - chr3R_40_18835001 chr3R_18835001 RAL-819 3136 chr3R 18897584 18897610 chr3R 18897685 18897711 12 100 9.0 9.0 9.0 1.2 127 chr3R 18897584 intergenic not near genes chr3R 18897648 intergenic CG14297 + chr3R 18897711 intergenic CG14297 + chr3R_12_18895001 chr3R_18895001 RAL-819 3137 chr3R 18913648 18913689 chr3R 18913772 18913814 19 120 11.5 8.5 10.0 1.7 166 chr3R 18913648 intergenic not near genes chr3R 18913731 intergenic not near genes chr3R 18913814 intergenic not near genes chr3R_19_18910001 chr3R_18910001 RAL-819 3138 chr3R 18933789 18933811 chr3R 18933882 18933916 8 98 32.0 27.5 29.8 0.3 127 chr3R 18933789 intron CG42613 + chr3R 18933852 intron CG42613 + chr3R 18933916 intron CG42613 + chr3R_8_18930001 chr3R_18930001 RAL-819 3139 chr3R 19014072 19014102 chr3R 19014177 19014207 21 104 27.0 18.0 22.5 0.9 135 chr3R 19014072 intron gukh + chr3R 19014140 intron gukh + chr3R 19014207 intron gukh + chr3R_21_19010001 chr3R_19010001 RAL-819 3140 chr3R 19014103 19014123 chr3R 19014173 19014208 17 92 25.0 18.5 21.8 0.7 105 chr3R 19014103 intron gukh + chr3R 19014156 intron gukh + chr3R 19014208 intron gukh + chr3R_17_19010001 chr3R_19010001 RAL-819 3141 chr3R 19033903 19033911 chr3R 19034006 19034008 7 101 35.5 8.5 22.0 0.3 105 chr3R 19033903 intron CG6026 + chr3R 19033956 intron CG6026 + chr3R 19034008 intron CG6026 + chr3R_7_19030001 chr3R_19030001 RAL-819 3142 chr3R 19033912 19033960 chr3R 19034005 19034055 49 97 9.0 8.5 8.8 5.0 143 chr3R 19033912 intron CG6026 + chr3R 19033984 intron CG6026 + chr3R 19034055 intron CG6026 + chr3R_49_19030001 chr3R_19030001 RAL-819 3143 chr3R 19106806 19106849 chr3R 19106914 19106915 9 96 14.0 2.5 8.2 1.0 109 chr3R 19106806 intron CG6040 + chr3R 19106860 intron CG6040 + chr3R 19106915 intron CG6040 + chr3R_9_19105001 chr3R_19105001 RAL-819 3144 chr3R 19107532 19107585 chr3R 19107634 19107643 24 87 0.0 6.5 3.2 5.7 111 chr3R 19107532 intron CG6040 + chr3R 19107588 intron CG6040 + chr3R 19107643 intron CG6040 + chr3R_24_19105001 chr3R_19105001 RAL-819 3145 chr3R 19117037 19117049 chr3R 19117206 19117217 10 168 32.5 0.0 16.2 0.6 180 chr3R 19117037 intron CG6040 + chr3R 19117127 intron CG6040 + chr3R 19117217 intron CG6040 + chr3R_10_19115001 chr3R_19115001 RAL-819 3146 chr3R 19136406 19136409 chr3R 19139767 19139810 Bari1 35 3374 147.5 85.0 116.2 0.3 3404 chr3R 19136406 exon Cyp12a4 + chr3R 19138108 intergenic not near genes chr3R 19139810 3` UTR Ppcs - chr3R_35_19135001 chr3R_19135001 RAL-819 3147 chr3R 19140241 19140251 chr3R 19140714 19140724 6 472 37.5 9.0 23.2 0.2 483 chr3R 19140241 3` UTR Ppcs - chr3R 19140482 3` UTR Ppcs - chr3R 19140724 3` UTR Ppcs - chr3R_6_19140001 chr3R_19140001 RAL-819 3148 chr3R 19140252 19140301 chr3R 19140713 19140744 48 467 13.0 9.0 11.0 4.0 492 chr3R 19140252 3` UTR Ppcs - chr3R 19140498 3` UTR Ppcs - chr3R 19140744 3` UTR Ppcs - chr3R_48_19140001 chr3R_19140001 RAL-819 3149 chr3R 19192951 19193008 chr3R 19197280 19197337 F-element 7 4320 0.0 11.5 5.8 1.0 4386 chr3R 19192951 intron CG31475 + chr3R 19195144 intron CG31475 + chr3R 19197337 intron CG31475 + chr3R_7_19195001 chr3R_19195001 RAL-819 3150 chr3R 19276905 19276947 chr3R 19277010 19277013 28 103 7.5 3.5 5.5 4.3 108 chr3R 19276905 intergenic not near genes chr3R 19276959 intergenic not near genes chr3R 19277013 intergenic not near genes chr3R_28_19275001 chr3R_19275001 RAL-819 3151 chr3R 19337200 19337207 chr3R 19337302 19337309 7 102 33.0 56.5 44.8 0.2 109 chr3R 19337200 intergenic not near genes chr3R 19337254 intergenic not near genes chr3R 19337309 intergenic not near genes chr3R_7_19335001 chr3R_19335001 RAL-819 3152 chr3R 19340374 19340430 chr3R 19340476 19340532 48 98 19.0 14.5 16.8 2.7 158 chr3R 19340374 intergenic not near genes chr3R 19340453 intergenic not near genes chr3R 19340532 intergenic not near genes chr3R_48_19340001 chr3R_19340001 RAL-819 3153 chr3R 19364415 19364454 chr3R 19364585 19364615 30 170 5.5 9.0 7.2 3.7 200 chr3R 19364415 intergenic not near genes chr3R 19364515 intergenic not near genes chr3R 19364615 intergenic not near genes chr3R_30_19360001 chr3R_19360001 RAL-819 3154 chr3R 19417531 19417557 chr3R 19417644 19417680 11 118 1.5 13.5 7.5 1.3 149 chr3R 19417531 intron CG31221 + chr3R 19417606 intron CG31221 + chr3R 19417680 intron CG31221 + chr3R_11_19415001 chr3R_19415001 RAL-819 3155 chr3R 19431088 19431124 chr3R 19431348 19431384 31 258 9.5 5.0 7.2 3.8 296 chr3R 19431088 intron CG31221 + chr3R 19431236 intron CG31221 + chr3R 19431384 intron CG31221 + chr3R_31_19430001 chr3R_19430001 RAL-819 3156 chr3R 19431495 19431499 chr3R 19431604 19431608 5 109 7.5 14.0 10.8 0.4 113 chr3R 19431495 intron CG31221 + chr3R 19431552 intron CG31221 + chr3R 19431608 intron CG31221 + chr3R_5_19430001 chr3R_19430001 RAL-819 3157 chr3R 19440210 19440218 chr3R 19440315 19440321 6 104 15.5 10.0 12.8 0.4 111 chr3R 19440210 intron CG31221 + chr3R 19440266 intron CG31221 + chr3R 19440321 intron CG31221 + chr3R_6_19440001 chr3R_19440001 RAL-819 3158 chr3R 19465511 19465565 chr3R 19465646 19465697 37 132 9.0 14.5 11.8 2.9 186 chr3R 19465511 intron Dys + chr3R 19465604 intron Dys + chr3R 19465697 intron Dys + chr3R_37_19465001 chr3R_19465001 RAL-819 3159 chr3R 19494388 19494406 chr3R 19494493 19494511 14 105 18.5 16.0 17.2 0.8 123 chr3R 19494388 intron Dys + chr3R 19494450 intron Dys + chr3R 19494511 intron Dys + chr3R_14_19490001 chr3R_19490001 RAL-819 3160 chr3R 19590622 19590647 chr3R 19590739 19590764 19 116 11.5 14.0 12.8 1.4 142 chr3R 19590622 exon Dys + chr3R 19590693 intron Dys + chr3R 19590764 exon Dys + chr3R_19_19590001 chr3R_19590001 RAL-819 3161 chr3R 19591512 19591551 chr3R 19591618 19591657 7 106 3.5 6.5 5.0 1.2 145 chr3R 19591512 intron Dys + chr3R 19591584 intron Dys + chr3R 19591657 exon Dys + chr3R_7_19590001 chr3R_19590001 RAL-819 3162 chr3R 19639399 19639457 chr3R 19639762 19639811 51 362 11.5 5.5 8.5 5.4 412 chr3R 19639399 exon subdued - chr3R 19639605 intron subdued - chr3R 19639811 intron subdued - chr3R_51_19635001 chr3R_19635001 RAL-819 3163 chr3R 19668626 19668647 chr3R 19668728 19668734 10 97 31.5 17.0 24.2 0.4 108 chr3R 19668626 exon CG7432 + chr3R 19668680 exon CG7432 + chr3R 19668734 exon CG7432 + chr3R_10_19665001 chr3R_19665001 RAL-819 3164 chr3R 19668649 19668681 chr3R 19668726 19668767 26 94 18.5 13.5 16.0 1.5 118 chr3R 19668649 exon CG7432 + chr3R 19668708 exon CG7432 + chr3R 19668767 exon CG7432 + chr3R_26_19665001 chr3R_19665001 RAL-819 3165 chr3R 19716185 19716230 chr3R 19716291 19716332 17 102 2.5 0.0 1.2 7.7 147 chr3R 19716185 intergenic CG34286 - chr3R 19716258 intergenic CG34286 - chr3R 19716332 intergenic CG34286 - chr3R_17_19715001 chr3R_19715001 RAL-819 3166 chr3R 19734000 19734010 chr3R 19734103 19734113 7 103 9.5 8.5 9.0 0.7 113 chr3R 19734000 intron GluClalpha + chr3R 19734056 intron GluClalpha + chr3R 19734113 intron GluClalpha + chr3R_7_19730001 chr3R_19730001 RAL-819 3167 chr3R 19755399 19755457 chr3R 19755519 19755577 43 116 11.0 9.5 10.2 3.8 178 chr3R 19755399 intron GluClalpha + chr3R 19755488 intron GluClalpha + chr3R 19755577 intron GluClalpha + chr3R_43_19755001 chr3R_19755001 RAL-819 3168 chr3R 19827500 19827558 chr3R 19827611 19827669 35 109 8.5 10.0 9.2 3.4 169 chr3R 19827500 intron bnl - chr3R 19827584 intron bnl - chr3R 19827669 exon bnl - chr3R_35_19825001 chr3R_19825001 RAL-819 3169 chr3R 19846935 19846965 chr3R 19847120 19847150 22 184 20.0 0.0 10.0 2.0 215 chr3R 19846935 intergenic CG4662 + chr3R 19847042 intergenic CG4662 + chr3R 19847150 intergenic CG4662 + chr3R_22_19845001 chr3R_19845001 RAL-819 3170 chr3R 19848285 19848292 chr3R 19848417 19848424 6 132 0.0 5.5 2.8 1.6 139 chr3R 19848285 intron CG4662 + chr3R 19848354 intron CG4662 + chr3R 19848424 intron CG4662 + chr3R_6_19845001 chr3R_19845001 RAL-819 3171 chr3R 19945948 19945960 chr3R 19946075 19946082 6 127 29.0 10.0 19.5 0.3 134 chr3R 19945948 intron Hs6st - chr3R 19946015 intron Hs6st - chr3R 19946082 intron Hs6st - chr3R_6_19945001 chr3R_19945001 RAL-819 3172 chr3R 19945961 19946002 chr3R 19946074 19946110 24 122 14.0 10.0 12.0 1.8 149 chr3R 19945961 intron Hs6st - chr3R 19946036 intron Hs6st - chr3R 19946110 intron Hs6st - chr3R_24_19945001 chr3R_19945001 RAL-819 3173 chr3R 19955322 19955376 chr3R 19955448 19955502 31 125 10.5 13.0 11.8 2.4 180 chr3R 19955322 intron Hs6st - chr3R 19955412 intron Hs6st - chr3R 19955502 intron Hs6st - chr3R_31_19955001 chr3R_19955001 RAL-819 3174 chr3R 20008797 20008854 chr3R 20008903 20008958 49 103 10.5 13.5 12.0 3.8 161 chr3R 20008797 intergenic MED25 +,Hs6st - chr3R 20008878 intergenic MED25 +,Hs6st - chr3R 20008958 5` UTR MED25 + chr3R_49_20005001 chr3R_20005001 RAL-819 3175 chr3R 20020123 20020183 chr3R 20020290 20020350 63 160 12.5 12.0 12.2 4.8 227 chr3R 20020123 intron CG4433 - chr3R 20020236 intron CG4433 - chr3R 20020350 exon CG4433 - chr3R_63_20020001 chr3R_20020001 RAL-819 3176 chr3R 20022799 20022846 chr3R 20022933 20022977 33 133 12.0 9.5 10.8 2.8 178 chr3R 20022799 intron psidin + chr3R 20022888 intron psidin + chr3R 20022977 intron psidin + chr3R_33_20020001 chr3R_20020001 RAL-819 3177 chr3R 20048931 20048980 chr3R 20049248 20049287 22 312 15.0 16.0 15.5 1.3 356 chr3R 20048931 intron CG17193 - chr3R 20049109 intron CG17193 - chr3R 20049287 intron CG17193 - chr3R_22_20045001 chr3R_20045001 RAL-819 3178 chr3R 20077013 20077068 chr3R 20077124 20077179 48 106 12.5 14.5 13.5 3.3 166 chr3R 20077013 intergenic not near genes chr3R 20077096 intergenic not near genes chr3R 20077179 intergenic not near genes chr3R_48_20075001 chr3R_20075001 RAL-819 3179 chr3R 20087113 20087143 chr3R 20087232 20087262 14 118 23.5 0.0 11.8 1.1 149 chr3R 20087113 intergenic not near genes chr3R 20087188 intergenic not near genes chr3R 20087262 intergenic not near genes chr3R_14_20085001 chr3R_20085001 RAL-819 3180 chr3R 20087155 20087161 chr3R 20087274 20087280 7 119 12.0 0.0 6.0 1.0 125 chr3R 20087155 intergenic not near genes chr3R 20087218 intergenic not near genes chr3R 20087280 intergenic not near genes chr3R_7_20085001 chr3R_20085001 RAL-819 3181 chr3R 20109513 20109567 chr3R 20114742 20114769 copia 19 5227 7.5 7.5 7.5 2.2 5256 chr3R 20109513 intergenic not near genes chr3R 20112141 intergenic not near genes chr3R 20114769 intergenic CG10887 + chr3R_19_20110001 chr3R_20110001 RAL-819 3182 chr3R 20132955 20132974 chr3R 20133056 20133060 6 94 22.5 4.0 13.2 0.4 105 chr3R 20132955 intergenic not near genes chr3R 20133008 intergenic not near genes chr3R 20133060 intergenic not near genes chr3R_6_20130001 chr3R_20130001 RAL-819 3183 chr3R 20156678 20156694 chr3R 20165866 20165889 roo 11 9192 24.0 10.0 17.0 0.6 9211 chr3R 20156678 intergenic not near genes chr3R 20161284 intergenic not near genes chr3R 20165889 intergenic not near genes chr3R_11_20160001 chr3R_20160001 RAL-819 3184 chr3R 20156695 20156718 chr3R 20165865 20165913 roo 20 9188 13.5 10.0 11.8 1.6 9218 chr3R 20156695 intergenic not near genes chr3R 20161304 intergenic not near genes chr3R 20165913 intergenic not near genes chr3R_20_20160001 chr3R_20160001 RAL-819 3185 chr3R 20205542 20205596 chr3R 20205689 20205743 35 145 12.0 12.5 12.2 2.7 201 chr3R 20205542 intron Nlg4 + chr3R 20205642 intron Nlg4 + chr3R 20205743 intron Nlg4 + chr3R_35_20205001 chr3R_20205001 RAL-819 3186 chr3R 20205918 20205936 chr3R 20206017 20206045 8 107 3.5 2.5 3.0 2.0 127 chr3R 20205918 intron Nlg4 + chr3R 20205982 intron Nlg4 + chr3R 20206045 intron Nlg4 + chr3R_8_20205001 chr3R_20205001 RAL-819 3187 chr3R 20222246 20222283 chr3R 20222354 20222391 27 107 6.5 15.5 11.0 2.2 145 chr3R 20222246 intron Nlg4 + chr3R 20222318 intron Nlg4 + chr3R 20222391 intron Nlg4 + chr3R_27_20220001 chr3R_20220001 RAL-819 3188 chr3R 20230297 20230352 chr3R 20230402 20230460 25 107 6.0 0.0 3.0 6.2 163 chr3R 20230297 intron Nlg4 + chr3R 20230378 intron Nlg4 + chr3R 20230460 intron Nlg4 + chr3R_25_20230001 chr3R_20230001 RAL-819 3189 chr3R 20242552 20242560 chr3R 20242680 20242688 7 128 32.0 10.0 21.0 0.3 136 chr3R 20242552 intron Nlg4 + chr3R 20242620 intron Nlg4 + chr3R 20242688 intron Nlg4 + chr3R_7_20240001 chr3R_20240001 RAL-819 3190 chr3R 20242561 20242610 chr3R 20242679 20242738 39 126 10.0 9.5 9.8 3.6 177 chr3R 20242561 intron Nlg4 + chr3R 20242650 intron Nlg4 + chr3R 20242738 intron Nlg4 + chr3R_39_20240001 chr3R_20240001 RAL-819 3191 chr3R 20245267 20245305 chr3R 20248899 20248940 F-element 14 3635 0.5 5.0 2.8 3.7 3673 chr3R 20245267 3` UTR Nlg4 + chr3R 20247104 intergenic not near genes chr3R 20248940 intergenic not near genes chr3R_14_20245001 chr3R_20245001 RAL-819 3192 chr3R 20266502 20266516 chr3R 20272990 20273012 Burdock 18 6494 3.0 17.0 10.0 1.6 6510 chr3R 20266502 intron cic + chr3R 20269757 intron cic + chr3R 20273012 intron cic + chr3R_18_20265001 chr3R_20265001 RAL-819 3193 chr3R 20266517 20266545 chr3R 20272989 20273041 Burdock 20 6494 1.5 17.0 9.2 2.0 6524 chr3R 20266517 intron cic + chr3R 20269779 intron cic + chr3R 20273041 intron cic + chr3R_20_20265001 chr3R_20265001 RAL-819 3194 chr3R 20282250 20282308 chr3R 20282351 20282404 32 100 2.5 9.5 6.0 4.6 154 chr3R 20282250 intron cic + chr3R 20282327 intron cic + chr3R 20282404 intron cic + chr3R_32_20280001 chr3R_20280001 RAL-819 3195 chr3R 20308163 20308220 chr3R 20308276 20308344 23 117 9.5 0.0 4.8 4.0 181 chr3R 20308163 intergenic not near genes chr3R 20308254 intergenic not near genes chr3R 20308344 intergenic not near genes chr3R_23_20305001 chr3R_20305001 RAL-819 3196 chr3R 20330977 20331029 chr3R 20331488 20331540 roo 36 510 12.5 13.5 13.0 2.6 563 chr3R 20330977 intergenic Sirt2 + chr3R 20331258 intergenic Sirt2 + chr3R 20331540 intergenic not near genes chr3R_36_20330001 chr3R_20330001 RAL-819 3197 chr3R 20350178 20350238 chr3R 20350284 20350344 50 104 9.5 13.5 11.5 4.0 166 chr3R 20350178 intergenic not near genes chr3R 20350261 intergenic not near genes chr3R 20350344 intergenic not near genes chr3R_50_20350001 chr3R_20350001 RAL-819 3198 chr3R 20394806 20394819 chr3R 20394907 20394917 8 101 12.5 7.0 9.8 0.7 111 chr3R 20394806 intron Gfrl - chr3R 20394862 intron Gfrl - chr3R 20394917 intron Gfrl - chr3R_8_20390001 chr3R_20390001 RAL-819 3199 chr3R 20434817 20434865 chr3R 20435027 20435075 32 209 9.0 0.0 4.5 5.8 258 chr3R 20434817 intron Gfrl - chr3R 20434946 intron Gfrl - chr3R 20435075 intron Gfrl - chr3R_32_20430001 chr3R_20430001 RAL-819 3200 chr3R 20451566 20451589 chr3R 20451679 20451732 21 123 0.0 13.5 6.8 2.7 166 chr3R 20451566 intron Gfrl - chr3R 20451649 intron Gfrl - chr3R 20451732 intron Gfrl - chr3R_21_20450001 chr3R_20450001 RAL-819 3201 chr3R 20469258 20469289 chr3R 20469380 20469413 12 122 18.5 0.5 9.5 1.1 155 chr3R 20469258 intron Gfrl - chr3R 20469336 intron Gfrl - chr3R 20469413 intron Gfrl - chr3R_12_20465001 chr3R_20465001 RAL-819 3202 chr3R 20469298 20469465 chr3R 20469379 20469573 5 92 0.0 0.5 0.2 4.2 275 chr3R 20469298 intron Gfrl - chr3R 20469436 intron Gfrl - chr3R 20469573 intron Gfrl - chr3R_5_20465001 chr3R_20465001 RAL-819 3203 chr3R 20488988 20489046 chr3R 20489089 20489147 35 98 10.5 8.5 9.5 3.3 159 chr3R 20488988 intergenic not near genes chr3R 20489068 intergenic not near genes chr3R 20489147 intergenic not near genes chr3R_35_20485001 chr3R_20485001 RAL-819 3204 chr3R 20499845 20499848 chr3R 20499960 20499963 4 115 32.5 14.0 23.2 0.2 118 chr3R 20499845 intergenic Dic2 - chr3R 20499904 intergenic Dic2 - chr3R 20499963 intergenic Dic2 - chr3R_4_20495001 chr3R_20495001 RAL-819 3205 chr3R 20499849 20499877 chr3R 20499959 20499992 24 114 20.5 13.0 16.8 1.3 143 chr3R 20499849 intergenic Dic2 - chr3R 20499920 intergenic Dic2 - chr3R 20499992 3` UTR Dic2 - chr3R_24_20495001 chr3R_20495001 RAL-819 3206 chr3R 20499890 20499898 chr3R 20499958 20499977 7 103 14.0 12.0 13.0 0.5 87 chr3R 20499890 intergenic Dic2 - chr3R 20499934 intergenic Dic2 - chr3R 20499977 intergenic Dic2 - chr3R_7_20495001 chr3R_20495001 RAL-819 3207 chr3R 20506567 20506608 chr3R 20507395 20507435 BS 30 827 21.5 20.5 21.0 1.4 868 chr3R 20506567 intergenic Or92a + chr3R 20507001 intergenic CG4288 - chr3R 20507435 3` UTR CG4288 - chr3R_30_20505001 chr3R_20505001 RAL-819 3208 chr3R 20512968 20513004 chr3R 20515705 20515741 opus 23 2736 12.5 1.5 7.0 2.9 2773 chr3R 20512968 intergenic CG4288 - chr3R 20514354 intergenic not near genes chr3R 20515741 intergenic not near genes chr3R_23_20510001 chr3R_20510001 RAL-819 3209 chr3R 20686754 20686803 chr3R 20692265 20692319 50 5513 100.0 110.5 105.2 0.5 5565 chr3R 20686754 intergenic not near genes chr3R 20689536 3` UTR Oamb - chr3R 20692319 intron Oamb - chr3R_50_20685001 chr3R_20685001 RAL-819 3210 chr3R 20708723 20708785 chr3R 20708833 20708895 42 107 9.0 9.5 9.2 4.1 172 chr3R 20708723 intron Oamb - chr3R 20708809 intron Oamb - chr3R 20708895 intron Oamb - chr3R_42_20705001 chr3R_20705001 RAL-819 3211 chr3R 20717077 20717092 chr3R 20717181 20717200 8 107 31.0 2.5 16.8 0.4 123 chr3R 20717077 intergenic not near genes chr3R 20717138 intergenic not near genes chr3R 20717200 intergenic not near genes chr3R_8_20715001 chr3R_20715001 RAL-819 3212 chr3R 20730918 20730949 chr3R 20731034 20731034 23 115 15.0 0.0 7.5 2.7 116 chr3R 20730918 intergenic not near genes chr3R 20730976 intergenic not near genes chr3R 20731034 intergenic not near genes chr3R_23_20730001 chr3R_20730001 RAL-819 3213 chr3R 20787412 20787458 chr3R 20787528 20787574 33 114 15.0 11.0 13.0 2.4 162 chr3R 20787412 intron Syp + chr3R 20787493 intron Syp + chr3R 20787574 intron Syp + chr3R_33_20785001 chr3R_20785001 RAL-819 3214 chr3R 20854446 20854519 chr3R 20859266 20859279 Doc 30 4806 4.5 14.0 9.2 2.9 4833 chr3R 20854446 intron Ir93a - chr3R 20856862 intron Ir93a - chr3R 20859279 exon Ir93a - chr3R_30_20855001 chr3R_20855001 RAL-819 3215 chr3R 20870225 20870282 chr3R 20870335 20870371 58 108 7.0 9.0 8.0 6.4 146 chr3R 20870225 intergenic not near genes chr3R 20870298 intergenic not near genes chr3R 20870371 intergenic not near genes chr3R_58_20870001 chr3R_20870001 RAL-819 3216 chr3R 20899889 20899940 chr3R 20900010 20900061 30 120 1.0 11.0 6.0 4.3 172 chr3R 20899889 intergenic not near genes chr3R 20899975 intergenic not near genes chr3R 20900061 intergenic not near genes chr3R_30_20895001 chr3R_20895001 RAL-819 3217 chr3R 20901629 20901687 chr3R 20901757 20901807 50 126 7.5 11.0 9.2 4.9 178 chr3R 20901629 intergenic CG5621 + chr3R 20901718 intergenic CG5621 + chr3R 20901807 intergenic CG5621 + chr3R_50_20900001 chr3R_20900001 RAL-819 3218 chr3R 20924933 20924936 chr3R 20925035 20925038 4 102 0.5 27.5 14.0 0.3 105 chr3R 20924933 intron,intron CG31191 -,hdly + chr3R 20924986 intron,intron CG31191 -,hdly + chr3R 20925038 intron,intron CG31191 -,hdly + chr3R_4_20920001 chr3R_20920001 RAL-819 3219 chr3R 20936061 20936106 chr3R 20936163 20936208 18 101 9.0 7.0 8.0 2.0 147 chr3R 20936061 intron CG31191 - chr3R 20936134 intron CG31191 - chr3R 20936208 intron CG31191 - chr3R_18_20935001 chr3R_20935001 RAL-819 3220 chr3R 20966123 20966157 chr3R 20966226 20966265 24 107 3.5 15.5 9.5 2.3 142 chr3R 20966123 intron Atpalpha + chr3R 20966194 intron Atpalpha + chr3R 20966265 intron Atpalpha + chr3R_24_20965001 chr3R_20965001 RAL-819 3221 chr3R 20981594 20981644 chr3R 20982043 20982093 32 446 9.5 9.0 9.2 3.1 499 chr3R 20981594 intron Calx + chr3R 20981844 intron Calx + chr3R 20982093 intron Calx + chr3R_32_20980001 chr3R_20980001 RAL-819 3222 chr3R 21020376 21020433 chr3R 21020477 21020534 53 100 10.0 9.0 9.5 5.0 158 chr3R 21020376 3` UTR Rlip + chr3R 21020455 3` UTR Rlip + chr3R 21020534 3` UTR Rlip + chr3R_53_21020001 chr3R_21020001 RAL-819 3223 chr3R 21082773 21082828 chr3R 21082874 21082932 26 102 11.0 6.5 8.8 2.7 159 chr3R 21082773 intergenic RhoGAP93B - chr3R 21082852 intergenic RhoGAP93B - chr3R 21082932 intergenic RhoGAP93B - chr3R_26_21080001 chr3R_21080001 RAL-819 3224 chr3R 21118929 21118936 chr3R 21119061 21119068 INE-1 8 132 30.0 15.5 22.8 0.3 139 chr3R 21118929 intergenic Bdbt -,slmb - chr3R 21118998 intergenic Bdbt -,slmb - chr3R 21119068 intergenic slmb -,Bdbt - chr3R_8_21115001 chr3R_21115001 RAL-819 3225 chr3R 21141651 21141707 chr3R 21150157 21150173 Tirant 27 8495 13.5 13.0 13.2 1.9 8522 chr3R 21141651 intron SNF4Agamma + chr3R 21145912 intron SNF4Agamma + chr3R 21150173 intron SNF4Agamma + chr3R_27_21145001 chr3R_21145001 RAL-819 3226 chr3R 21239819 21239821 chr3R 27980098 27980100 5 6740279 14.5 48.5 31.5 0.2 6740281 chr3R 21239819 intergenic not near genes chr3R 24609960 intron mld + chr3R 27980100 intron betaTub97EF - chr3R_5_24605001 chr3R_24605001 RAL-819 3227 chr3R 21240421 21240478 chr3R 21240538 21240595 43 114 7.0 11.5 9.2 4.2 174 chr3R 21240421 intergenic not near genes chr3R 21240508 intergenic not near genes chr3R 21240595 intergenic not near genes chr3R_43_21240001 chr3R_21240001 RAL-819 3228 chr3R 21383269 21383272 chr3R 21383374 21383377 5 105 0.5 2.5 1.5 2.0 108 chr3R 21383269 intergenic not near genes chr3R 21383323 intergenic not near genes chr3R 21383377 intergenic not near genes chr3R_5_21380001 chr3R_21380001 RAL-819 3229 chr3R 21383287 21383301 chr3R 21383366 21383406 7 101 0.5 2.5 1.5 2.8 119 chr3R 21383287 intergenic not near genes chr3R 21383346 intergenic not near genes chr3R 21383406 intergenic not near genes chr3R_7_21380001 chr3R_21380001 RAL-819 3230 chr3R 21385670 21385962 chr3R 21385774 21386014 50 98 6.5 0.0 3.2 11.9 344 chr3R 21385670 intergenic not near genes chr3R 21385842 intergenic not near genes chr3R 21386014 intergenic not near genes chr3R_50_21385001 chr3R_21385001 RAL-819 3231 chr3R 21460980 21461016 chr3R 21461095 21461131 8 110 9.5 0.0 4.8 1.4 151 chr3R 21460980 intergenic not near genes chr3R 21461056 intergenic not near genes chr3R 21461131 intergenic not near genes chr3R_8_21460001 chr3R_21460001 RAL-819 3232 chr3R 21464378 21464427 chr3R 21464489 21464533 25 109 5.5 7.0 6.2 3.5 155 chr3R 21464378 intergenic not near genes chr3R 21464456 intergenic not near genes chr3R 21464533 intergenic not near genes chr3R_25_21460001 chr3R_21460001 RAL-819 3233 chr3R 21471995 21472033 chr3R 21472101 21472139 32 105 22.0 17.5 19.8 1.5 144 chr3R 21471995 intergenic not near genes chr3R 21472067 intergenic not near genes chr3R 21472139 intergenic not near genes chr3R_32_21470001 chr3R_21470001 RAL-819 3234 chr3R 21481366 21481377 chr3R 21481482 21481483 4 114 34.0 0.0 17.0 0.2 117 chr3R 21481366 intergenic not near genes chr3R 21481424 intergenic not near genes chr3R 21481483 intergenic not near genes chr3R_4_21480001 chr3R_21480001 RAL-819 3235 chr3R 21518252 21518262 chr3R 21518361 21518371 9 109 0.0 28.0 14.0 0.6 119 chr3R 21518252 intergenic not near genes chr3R 21518312 intergenic not near genes chr3R 21518371 intergenic not near genes chr3R_9_21515001 chr3R_21515001 RAL-819 3236 chr3R 21518265 21518271 chr3R 21518357 21518380 7 106 0.0 28.0 14.0 0.5 115 chr3R 21518265 intergenic not near genes chr3R 21518322 intergenic not near genes chr3R 21518380 intergenic not near genes chr3R_7_21515001 chr3R_21515001 RAL-819 3237 chr3R 21520107 21520134 chr3R 21520226 21520253 16 119 16.0 16.0 16.0 0.9 146 chr3R 21520107 intergenic not near genes chr3R 21520180 intergenic not near genes chr3R 21520253 intergenic not near genes chr3R_16_21520001 chr3R_21520001 RAL-819 3238 chr3R 21594623 21594670 chr3R 21597305 21597363 40 2682 8.5 15.5 12.0 3.1 2740 chr3R 21594623 intron,5` UTR InR -,CR43653 + chr3R 21595993 intron InR - chr3R 21597363 intron InR - chr3R_40_21595001 chr3R_21595001 RAL-819 3239 chr3R 21725667 21725684 chr3R 21725818 21725845 9 160 0.0 18.5 9.2 0.9 178 chr3R 21725667 intergenic not near genes chr3R 21725756 intergenic not near genes chr3R 21725845 intergenic not near genes chr3R_9_21725001 chr3R_21725001 RAL-819 3240 chr3R 21734840 21734949 chr3R 21734941 21735064 15 101 0.0 0.0 0.0 15.0 224 chr3R 21734840 intergenic not near genes chr3R 21734952 intergenic not near genes chr3R 21735064 intergenic not near genes chr3R_15_21730001 chr3R_21730001 RAL-819 3241 chr3R 21751137 21751193 chr3R 21753908 21753964 29 2776 121.5 111.0 116.2 0.2 2827 chr3R 21751137 exon CG31233 + chr3R 21752550 exon CG31233 + chr3R 21753964 intergenic CG31198 + chr3R_29_21750001 chr3R_21750001 RAL-819 3242 chr3R 21761099 21761151 chr3R 21768516 21768533 mdg1 42 7409 21.0 21.0 21.0 1.9 7434 chr3R 21761099 exon CG42335 + chr3R 21764816 intron CG42335 + chr3R 21768533 exon CG42335 + chr3R_42_21760001 chr3R_21760001 RAL-819 3243 chr3R 21784816 21784873 chr3R 21784920 21784977 45 100 5.5 5.5 5.5 6.9 161 chr3R 21784816 3` UTR,3` UTR CASK -,CRG - chr3R 21784896 3` UTR,3` UTR CASK -,CRG - chr3R 21784977 3` UTR,3` UTR CASK -,CRG - chr3R_45_21780001 chr3R_21780001 RAL-819 3244 chr3R 21535616 21535625 chr3R 21795759 21795760 6 260137 31.0 40.5 35.8 0.2 260144 chr3R 21535616 intergenic CR44033 + chr3R 21665688 exon CG15497 + chr3R 21795760 intron CASK - chr3R_6_21665001 chr3R_21665001 RAL-819 3245 chr3R 21883945 21883990 chr3R 21884048 21884093 21 103 4.5 14.5 9.5 2.0 148 chr3R 21883945 intron,3` UTR,3` UTR CR45046 -,CG31465 +,fit - chr3R 21884019 intron,3` UTR CR45046 -,fit - chr3R 21884093 3` UTR,exon CR45046 -,fit - chr3R_21_21880001 chr3R_21880001 RAL-819 3246 chr3R 21903621 21903631 chr3R 21903734 21903753 16 120 0.0 20.5 10.2 1.4 132 chr3R 21903621 intron CG6678 + chr3R 21903687 intron CG6678 + chr3R 21903753 intron CG6678 + chr3R_16_21900001 chr3R_21900001 RAL-819 3247 chr3R 8339246 8339247 chr3R 21907534 21907534 9 13568288 59.5 63.0 61.2 0.1 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-819 3248 chr3R 9620954 9620957 chr3R 21907534 21907534 5 12286579 43.0 63.0 53.0 0.1 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_5_15760001 chr3R_15760001 RAL-819 3249 chr3R 15286987 15286988 chr3R 21907534 21907534 10 6620546 61.0 63.0 62.0 0.2 6620547 chr3R 15286987 intron Tm1 + chr3R 18597260 intron,exon qin +,CG14304 - chr3R 21907534 intergenic CG6678 + chr3R_10_18595001 chr3R_18595001 RAL-819 3250 chr3R 21907534 21907534 chr3R 24389465 24389465 11 2481931 69.0 50.5 59.8 0.2 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_11_23145001 chr3R_23145001 RAL-819 3251 chr3R 21907534 21907534 chr3R 26659332 26659335 4 4751800 69.0 68.0 68.5 0.1 4751801 chr3R 21907534 intergenic CG6678 + chr3R 24283434 intergenic CR45662 - chr3R 26659335 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-819 3252 chr3R 21907534 21907534 chr3R 28831798 28831804 62 6924268 69.0 48.0 58.5 1.0 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_62_25365001 chr3R_25365001 RAL-819 3253 chr3R 8339246 8339247 chr3R 21907535 21907535 6 13568288 59.5 63.5 61.5 0.1 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-819 3254 chr3R 9620954 9620956 chr3R 21907535 21907535 9 12286579 43.0 63.5 53.2 0.2 12286581 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_9_15760001 chr3R_15760001 RAL-819 3255 chr3R 21907535 21907535 chr3R 26659333 26659336 5 4751800 69.0 67.0 68.0 0.1 4751801 chr3R 21907535 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659336 intron beat-VII - chr3R_5_24280001 chr3R_24280001 RAL-819 3256 chr3R 21907535 21907535 chr3R 28831801 28831802 84 6924266 69.0 47.0 58.0 1.4 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_84_25365001 chr3R_25365001 RAL-819 3257 chr3R 9620956 9620957 chr3R 21907536 21907536 4 12286580 43.0 63.5 53.2 0.1 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-819 3258 chr3R 15286987 15286989 chr3R 21907536 21907536 4 6620548 61.0 63.5 62.2 0.1 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-819 3259 chr3R 21907536 21907536 chr3R 26659332 26659337 6 4751798 69.0 68.0 68.5 0.1 4751801 chr3R 21907536 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_6_24280001 chr3R_24280001 RAL-819 3260 chr3R 21907536 21907536 chr3R 28831801 28831804 83 6924266 69.0 47.0 58.0 1.4 6924268 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_83_25365001 chr3R_25365001 RAL-819 3261 chr3R 21907536 21907536 chr3R 29013340 29013340 4 7105804 69.0 57.5 63.2 0.1 7105804 chr3R 21907536 intergenic CG6678 + chr3R 25460438 intron Fur1 - chr3R 29013340 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-819 3262 chr3R 21918997 21919011 chr3R 21919101 21919116 15 105 0.0 35.0 17.5 0.8 119 chr3R 21918997 intergenic not near genes chr3R 21919056 intergenic not near genes chr3R 21919116 intergenic not near genes chr3R_15_21915001 chr3R_21915001 RAL-819 3263 chr3R 21944367 21944402 chr3R 21944472 21944508 15 102 16.5 19.5 18.0 0.8 141 chr3R 21944367 intergenic not near genes chr3R 21944438 intergenic not near genes chr3R 21944508 intergenic not near genes chr3R_15_21940001 chr3R_21940001 RAL-819 3264 chr3R 22055535 22055586 chr3R 22055749 22055800 20 210 10.5 13.5 12.0 1.5 265 chr3R 22055535 intron how + chr3R 22055668 intron how + chr3R 22055800 intron how + chr3R_20_22055001 chr3R_22055001 RAL-819 3265 chr3R 22055587 22055589 chr3R 22055747 22055797 5 187 8.5 11.0 9.8 0.5 210 chr3R 22055587 intron how + chr3R 22055692 intron how + chr3R 22055797 intron how + chr3R_5_22055001 chr3R_22055001 RAL-819 3266 chr3R 22081527 22081560 chr3R 22081629 22081662 18 100 5.0 15.0 10.0 1.6 135 chr3R 22081527 intron CG13408 + chr3R 22081594 intron CG13408 + chr3R 22081662 intron CG13408 + chr3R_18_22080001 chr3R_22080001 RAL-819 3267 chr3R 22117392 22117444 chr3R 22117493 22117545 27 100 5.0 5.5 5.2 4.4 153 chr3R 22117392 intergenic Ir94b -,Ir94c - chr3R 22117468 intergenic Ir94c -,Ir94b - chr3R 22117545 intergenic Ir94c -,Ir94b - chr3R_27_22115001 chr3R_22115001 RAL-819 3268 chr3R 22173136 22173163 chr3R 22173238 22173263 15 98 15.0 21.5 18.2 0.8 127 chr3R 22173136 intron SKIP + chr3R 22173200 intron SKIP + chr3R 22173263 intron SKIP + chr3R_15_22170001 chr3R_22170001 RAL-819 3269 chr3R 22239470 22239509 chr3R 22248555 22248594 roo 30 9083 19.0 19.0 19.0 1.5 9124 chr3R 22239470 intron SKIP + chr3R 22244032 intron SKIP + chr3R 22248594 intron SKIP + chr3R_30_22240001 chr3R_22240001 RAL-819 3270 chr3R 22239510 22239523 chr3R 22248551 22248608 roo 10 9077 13.5 15.5 14.5 0.6 9098 chr3R 22239510 intron SKIP + chr3R 22244059 intron SKIP + chr3R 22248608 intron SKIP + chr3R_10_22240001 chr3R_22240001 RAL-819 3271 chr3R 22309976 22309978 chr3R 22310084 22310086 4 108 33.0 7.5 20.2 0.2 110 chr3R 22309976 3` UTR CG34377 - chr3R 22310031 3` UTR CG34377 - chr3R 22310086 3` UTR CG34377 - chr3R_4_22310001 chr3R_22310001 RAL-819 3272 chr3R 22328892 22328929 chr3R 22331566 22331626 34 2675 85.5 99.5 92.5 0.4 2734 chr3R 22328892 intergenic CG7080 + chr3R 22330259 exon CG7080 + chr3R 22331626 intron CG33721 + chr3R_34_22330001 chr3R_22330001 RAL-819 3273 chr3R 22346046 22346213 chr3R 22346148 22346322 56 103 3.0 4.0 3.5 12.4 276 chr3R 22346046 intergenic not near genes chr3R 22346184 intergenic not near genes chr3R 22346322 intergenic not near genes chr3R_56_22345001 chr3R_22345001 RAL-819 3274 chr3R 22428555 22428609 chr3R 22428653 22428669 43 98 12.5 12.5 12.5 3.2 114 chr3R 22428555 intron CG13847 - chr3R 22428612 intron CG13847 - chr3R 22428669 intron CG13847 - chr3R_43_22425001 chr3R_22425001 RAL-819 3275 chr3R 22433067 22433084 chr3R 22433192 22433209 15 125 29.0 15.5 22.2 0.6 142 chr3R 22433067 intron CG13847 - chr3R 22433138 intron CG13847 - chr3R 22433209 intron CG13847 - chr3R_15_22430001 chr3R_22430001 RAL-819 3276 chr3R 22433086 22433099 chr3R 22433190 22433212 11 121 21.0 15.0 18.0 0.6 126 chr3R 22433086 intron CG13847 - chr3R 22433149 intron CG13847 - chr3R 22433212 intron CG13847 - chr3R_11_22430001 chr3R_22430001 RAL-819 3277 chr3R 22450521 22450526 chr3R 22453186 22453186 NOF 5 2664 44.0 21.5 32.8 0.1 2665 chr3R 22450521 intron CG34376 + chr3R 22451854 intron CG34376 + chr3R 22453186 intron CG34376 + chr3R_5_22450001 chr3R_22450001 RAL-819 3278 chr3R 22450528 22450562 chr3R 22453185 22453227 NOF 32 2661 25.5 21.5 23.5 1.3 2699 chr3R 22450528 intron CG34376 + chr3R 22451878 intron CG34376 + chr3R 22453227 intron CG34376 + chr3R_32_22450001 chr3R_22450001 RAL-819 3279 chr3R 22450563 22450573 chr3R 22453182 22453228 NOF 16 2655 17.0 20.0 18.5 0.8 2665 chr3R 22450563 intron CG34376 + chr3R 22451896 intron CG34376 + chr3R 22453228 intron CG34376 + chr3R_16_22450001 chr3R_22450001 RAL-819 3280 chr3R 22632086 22632130 chr3R 22632189 22632231 23 104 0.0 0.5 0.2 19.2 145 chr3R 22632086 intron loco - chr3R 22632158 intron loco - chr3R 22632231 intron loco - chr3R_23_22630001 chr3R_22630001 RAL-819 3281 chr3R 22643856 22643867 chr3R 22643966 22643973 6 109 34.0 6.0 20.0 0.3 117 chr3R 22643856 intron wake + chr3R 22643914 intron wake + chr3R 22643973 intron wake + chr3R_6_22640001 chr3R_22640001 RAL-819 3282 chr3R 22655680 22655715 chr3R 22655781 22655807 16 100 19.0 25.0 22.0 0.7 127 chr3R 22655680 intron wake + chr3R 22655744 intron wake + chr3R 22655807 intron wake + chr3R_16_22655001 chr3R_22655001 RAL-819 3283 chr3R 22794255 22794302 chr3R 22794506 22794553 25 250 11.0 11.5 11.2 2.0 298 chr3R 22794255 intergenic CG7029 + chr3R 22794404 intergenic CG7029 + chr3R 22794553 intergenic not near genes chr3R_25_22790001 chr3R_22790001 RAL-819 3284 chr3R 22803412 22803470 chr3R 22803628 22803656 49 214 14.0 9.5 11.8 3.8 244 chr3R 22803412 intergenic not near genes chr3R 22803534 intergenic not near genes chr3R 22803656 intergenic not near genes chr3R_49_22800001 chr3R_22800001 RAL-819 3285 chr3R 22811388 22811444 chr3R 22811806 22811829 37 414 11.0 12.0 11.5 3.0 441 chr3R 22811388 intergenic not near genes chr3R 22811608 intergenic not near genes chr3R 22811829 intergenic not near genes chr3R_37_22810001 chr3R_22810001 RAL-819 3286 chr3R 22842374 22842420 chr3R 22842487 22842544 39 122 6.5 7.0 6.8 5.0 170 chr3R 22842374 intergenic not near genes chr3R 22842459 intergenic not near genes chr3R 22842544 intergenic not near genes chr3R_39_22840001 chr3R_22840001 RAL-819 3287 chr3R 22853275 22853297 chr3R 22853372 22853399 19 101 20.0 24.0 22.0 0.8 124 chr3R 22853275 intergenic not near genes chr3R 22853337 intergenic not near genes chr3R 22853399 intergenic not near genes chr3R_19_22850001 chr3R_22850001 RAL-819 3288 chr3R 22860133 22860173 chr3R 22860250 22860290 27 116 6.0 16.5 11.2 2.2 157 chr3R 22860133 intergenic not near genes chr3R 22860212 intergenic not near genes chr3R 22860290 intergenic not near genes chr3R_27_22860001 chr3R_22860001 RAL-819 3289 chr3R 22863896 22863929 chr3R 22863999 22864032 40 100 8.5 19.0 13.8 2.7 136 chr3R 22863896 intergenic not near genes chr3R 22863964 intergenic not near genes chr3R 22864032 intergenic not near genes chr3R_40_22860001 chr3R_22860001 RAL-819 3290 chr3R 22877279 22877289 chr3R 22877432 22877442 4 152 37.5 12.0 24.8 0.2 163 chr3R 22877279 intergenic not near genes chr3R 22877360 intergenic not near genes chr3R 22877442 intergenic not near genes chr3R_4_22875001 chr3R_22875001 RAL-819 3291 chr3R 22877291 22877330 chr3R 22877426 22877483 24 149 10.0 10.5 10.2 2.1 192 chr3R 22877291 intergenic not near genes chr3R 22877387 intergenic not near genes chr3R 22877483 intergenic not near genes chr3R_24_22875001 chr3R_22875001 RAL-819 3292 chr3R 22880579 22880586 chr3R 22880680 22880688 5 102 32.0 30.5 31.2 0.2 109 chr3R 22880579 intergenic not near genes chr3R 22880634 intergenic not near genes chr3R 22880688 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-819 3293 chr3R 22880587 22880614 chr3R 22880679 22880712 19 96 18.5 30.5 24.5 0.7 125 chr3R 22880587 intergenic not near genes chr3R 22880650 intergenic not near genes chr3R 22880712 intergenic not near genes chr3R_19_22880001 chr3R_22880001 RAL-819 3294 chr3R 22880912 22880960 chr3R 22881071 22881123 43 162 11.5 13.0 12.2 3.3 211 chr3R 22880912 intergenic not near genes chr3R 22881018 intergenic not near genes chr3R 22881123 intergenic not near genes chr3R_43_22880001 chr3R_22880001 RAL-819 3295 chr3R 22881184 22881231 chr3R 22884902 22884961 Doc 26 3725 7.0 11.5 9.2 2.5 3777 chr3R 22881184 intergenic not near genes chr3R 22883072 intergenic not near genes chr3R 22884961 intergenic not near genes chr3R_26_22880001 chr3R_22880001 RAL-819 3296 chr3R 22913899 22913947 chr3R 22913997 22914041 29 97 12.5 11.0 11.8 2.3 142 chr3R 22913899 intron klg + chr3R 22913970 intron klg + chr3R 22914041 intron klg + chr3R_29_22910001 chr3R_22910001 RAL-819 3297 chr3R 22919134 22919140 chr3R 22919256 22919262 7 121 38.0 15.0 26.5 0.3 128 chr3R 22919134 intron klg + chr3R 22919198 intron klg + chr3R 22919262 intron klg + chr3R_7_22915001 chr3R_22915001 RAL-819 3298 chr3R 22919142 22919187 chr3R 22919253 22919309 40 114 16.0 12.5 14.2 2.6 167 chr3R 22919142 intron klg + chr3R 22919226 intron klg + chr3R 22919309 intron klg + chr3R_40_22915001 chr3R_22915001 RAL-819 3299 chr3R 23060255 23060260 chr3R 23060359 23060375 5 112 0.0 18.0 9.0 0.5 120 chr3R 23060255 intron sav - chr3R 23060315 intron sav - chr3R 23060375 intron sav - chr3R_5_23060001 chr3R_23060001 RAL-819 3300 chr3R 23070645 23070700 chr3R 23070739 23070803 18 106 0.5 2.0 1.2 8.2 158 chr3R 23070645 3` UTR CG13830 - chr3R 23070724 3` UTR CG13830 - chr3R 23070803 3` UTR CG13830 - chr3R_18_23070001 chr3R_23070001 RAL-819 3301 chr3R 23073642 23073689 chr3R 23073743 23073803 42 111 10.0 2.0 6.0 6.0 161 chr3R 23073642 intron CG13830 - chr3R 23073722 intron CG13830 - chr3R 23073803 intron CG13830 - chr3R_42_23070001 chr3R_23070001 RAL-819 3302 chr3R 23082925 23082982 chr3R 23083149 23083196 46 214 12.5 19.5 16.0 2.7 271 chr3R 23082925 intron CG13830 - chr3R 23083060 intron CG13830 - chr3R 23083196 intron CG13830 - chr3R_46_23080001 chr3R_23080001 RAL-819 3303 chr3R 23090377 23090435 chr3R 23090485 23090543 60 102 7.0 14.5 10.8 5.1 166 chr3R 23090377 intron CG13830 - chr3R 23090460 intron CG13830 - chr3R 23090543 intron CG13830 - chr3R_60_23090001 chr3R_23090001 RAL-819 3304 chr3R 23091232 23091288 chr3R 23091342 23091398 48 109 10.0 10.5 10.2 4.3 166 chr3R 23091232 intron CG13830 - chr3R 23091315 intron CG13830 - chr3R 23091398 intron CG13830 - chr3R_48_23090001 chr3R_23090001 RAL-819 3305 chr3R 23182663 23182699 chr3R 23182771 23182807 32 106 13.0 10.5 11.8 2.5 144 chr3R 23182663 intron Irk1 + chr3R 23182735 intron Irk1 + chr3R 23182807 intron Irk1 + chr3R_32_23180001 chr3R_23180001 RAL-819 3306 chr3R 23211965 23211992 chr3R 23212067 23212096 22 104 12.5 11.0 11.8 1.7 131 chr3R 23211965 intron cnc - chr3R 23212030 intron cnc - chr3R 23212096 intron cnc - chr3R_22_23210001 chr3R_23210001 RAL-819 3307 chr3R 23225033 23225043 chr3R 23225132 23225144 6 101 7.5 0.0 3.8 1.2 111 chr3R 23225033 intron cnc - chr3R 23225088 intron cnc - chr3R 23225144 intron cnc - chr3R_6_23225001 chr3R_23225001 RAL-819 3308 chr3R 23314039 23314041 chr3R 23314140 23314143 4 102 33.0 12.5 22.8 0.2 104 chr3R 23314039 intron pnt - chr3R 23314091 intron pnt - chr3R 23314143 intron pnt - chr3R_4_23310001 chr3R_23310001 RAL-819 3309 chr3R 23324001 23324055 chr3R 23324112 23324166 28 110 12.0 10.5 11.2 2.3 165 chr3R 23324001 intron pnt - chr3R 23324084 intron pnt - chr3R 23324166 intron pnt - chr3R_28_23320001 chr3R_23320001 RAL-819 3310 chr3R 23346815 23346873 chr3R 23346918 23346974 18 102 9.5 9.5 9.5 1.7 159 chr3R 23346815 intergenic not near genes chr3R 23346894 intergenic not near genes chr3R 23346974 intergenic not near genes chr3R_18_23345001 chr3R_23345001 RAL-819 3311 chr3R 23356990 23357011 chr3R 23357101 23357122 16 111 23.0 13.5 18.2 0.8 132 chr3R 23356990 intron Sec13 + chr3R 23357056 intron Sec13 + chr3R 23357122 intron Sec13 + chr3R_16_23355001 chr3R_23355001 RAL-819 3312 chr3R 23392179 23392228 chr3R 23392422 23392471 39 240 15.0 17.0 16.0 2.3 292 chr3R 23392179 intergenic not near genes chr3R 23392325 intergenic not near genes chr3R 23392471 intergenic not near genes chr3R_39_23390001 chr3R_23390001 RAL-819 3313 chr3R 23558374 23558426 chr3R 23560180 23560232 Bari1 29 1805 11.0 8.0 9.5 2.8 1858 chr3R 23558374 intron beat-IV + chr3R 23559303 intron beat-IV + chr3R 23560232 intron beat-IV + chr3R_29_23555001 chr3R_23555001 RAL-819 3314 chr3R 23564415 23564475 chr3R 23564584 23564644 42 168 10.0 10.5 10.2 3.8 229 chr3R 23564415 intron beat-IV + chr3R 23564530 intron beat-IV + chr3R 23564644 intron beat-IV + chr3R_42_23560001 chr3R_23560001 RAL-819 3315 chr3R 23684670 23684725 chr3R 23685181 23685236 roo 47 504 12.0 14.0 13.0 3.4 566 chr3R 23684670 exon CG18754 + chr3R 23684953 intron CG18754 + chr3R 23685236 exon CG18754 + chr3R_47_23680001 chr3R_23680001 RAL-819 3316 chr3R 23714055 23714084 chr3R 23714167 23714176 14 110 16.5 0.0 8.2 1.5 121 chr3R 23714055 intron nau - chr3R 23714116 intron nau - chr3R 23714176 intron nau - chr3R_14_23710001 chr3R_23710001 RAL-819 3317 chr3R 23725430 23725486 chr3R 23725536 23725592 34 106 7.0 11.5 9.2 3.3 162 chr3R 23725430 intron CG10365 + chr3R 23725511 intron CG10365 + chr3R 23725592 intron CG10365 + chr3R_34_23725001 chr3R_23725001 RAL-819 3318 chr3R 23835384 23835388 chr3R 23844559 23844563 roo 7 9175 30.5 6.0 18.2 0.4 9179 chr3R 23835384 intron CG34355 + chr3R 23839974 intron CG34355 + chr3R 23844563 intron CG34355 + chr3R_7_23835001 chr3R_23835001 RAL-819 3319 chr3R 23835389 23835433 chr3R 23844557 23844601 roo 40 9174 13.5 5.5 9.5 3.8 9212 chr3R 23835389 intron CG34355 + chr3R 23839995 intron CG34355 + chr3R 23844601 intron CG34355 + chr3R_40_23835001 chr3R_23835001 RAL-819 3320 chr3R 23851062 23851087 chr3R 23858754 23858779 opus 15 7692 8.5 19.5 14.0 1.0 7717 chr3R 23851062 3` UTR CG34355 + chr3R 23854920 intergenic not near genes chr3R 23858779 intergenic not near genes chr3R_15_23850001 chr3R_23850001 RAL-819 3321 chr3R 23865009 23865064 chr3R 23865118 23865143 40 112 7.0 11.0 9.0 4.0 134 chr3R 23865009 intron Pli - chr3R 23865076 intron Pli - chr3R 23865143 intron Pli - chr3R_40_23865001 chr3R_23865001 RAL-819 3322 chr3R 23883184 23883206 chr3R 23883286 23883308 21 100 13.0 14.5 13.8 1.4 124 chr3R 23883184 intron Pli - chr3R 23883246 intron Pli - chr3R 23883308 intron Pli - chr3R_21_23880001 chr3R_23880001 RAL-819 3323 chr3R 23884281 23884292 chr3R 23884385 23884400 6 106 31.0 12.5 21.8 0.3 119 chr3R 23884281 intron Pli - chr3R 23884340 intron Pli - chr3R 23884400 intron Pli - chr3R_6_23880001 chr3R_23880001 RAL-819 3324 chr3R 23884293 23884298 chr3R 23884381 23884407 11 107 28.5 10.0 19.2 0.5 114 chr3R 23884293 intron Pli - chr3R 23884350 intron Pli - chr3R 23884407 intron Pli - chr3R_11_23880001 chr3R_23880001 RAL-819 3325 chr3R 23884300 23884323 chr3R 23884379 23884432 25 103 16.0 10.5 13.2 1.8 132 chr3R 23884300 intron Pli - chr3R 23884366 intron Pli - chr3R 23884432 intron Pli - chr3R_25_23880001 chr3R_23880001 RAL-819 3326 chr3R 23888063 23888116 chr3R 23888174 23888196 42 109 16.0 15.0 15.5 2.5 133 chr3R 23888063 intron Pli - chr3R 23888130 intron Pli - chr3R 23888196 intron Pli - chr3R_42_23885001 chr3R_23885001 RAL-819 3327 chr3R 23944885 23944936 chr3R 23944995 23945045 36 109 8.0 13.5 10.8 3.1 160 chr3R 23944885 intron CG12268 - chr3R 23944965 intron CG12268 - chr3R 23945045 exon CG12268 - chr3R_36_23940001 chr3R_23940001 RAL-819 3328 chr3R 23949015 23949075 chr3R 23949117 23949177 54 102 11.0 11.5 11.2 4.4 162 chr3R 23949015 intergenic not near genes chr3R 23949096 intergenic not near genes chr3R 23949177 intergenic not near genes chr3R_54_23945001 chr3R_23945001 RAL-819 3329 chr3R 24011643 24011674 chr3R 24011751 24011782 12 107 10.0 4.5 7.2 1.5 139 chr3R 24011643 intron KrT95D - chr3R 24011712 intron KrT95D - chr3R 24011782 intron KrT95D - chr3R_12_24010001 chr3R_24010001 RAL-819 3330 chr3R 24072064 24072079 chr3R 24072527 24072531 jockey 9 460 40.5 0.0 20.2 0.4 467 chr3R 24072064 intron 4EHP - chr3R 24072298 intron 4EHP - chr3R 24072531 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-819 3331 chr3R 24072089 24072123 chr3R 24072522 24072578 jockey 13 449 13.0 0.0 6.5 1.7 489 chr3R 24072089 intron 4EHP - chr3R 24072334 intron 4EHP - chr3R 24072578 intron 4EHP - chr3R_13_24070001 chr3R_24070001 RAL-819 3332 chr3R 24076895 24076903 chr3R 24078387 24078395 hobo 5 1492 30.5 18.0 24.2 0.2 1500 chr3R 24076895 intron 4EHP - chr3R 24077645 intron 4EHP - chr3R 24078395 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-819 3333 chr3R 24076906 24076944 chr3R 24078383 24078429 hobo 27 1486 15.0 16.0 15.5 1.6 1523 chr3R 24076906 intron 4EHP - chr3R 24077668 intron 4EHP - chr3R 24078429 intron 4EHP - chr3R_27_24075001 chr3R_24075001 RAL-819 3334 chr3R 24100604 24100658 chr3R 24100719 24100763 41 110 12.0 15.5 13.8 2.8 159 chr3R 24100604 intron 4EHP - chr3R 24100684 intron 4EHP - chr3R 24100763 intron 4EHP - chr3R_41_24100001 chr3R_24100001 RAL-819 3335 chr3R 24173528 24173582 chr3R 24173635 24173689 19 106 8.0 8.5 8.2 2.1 161 chr3R 24173528 intron CG13606 + chr3R 24173608 intron CG13606 + chr3R 24173689 intron CG13606 + chr3R_19_24170001 chr3R_24170001 RAL-819 3336 chr3R 24207194 24207206 chr3R 24212295 24212296 flea 8 5098 37.0 21.0 29.0 0.3 5102 chr3R 24207194 intron twin - chr3R 24209745 intron twin - chr3R 24212296 intron twin - chr3R_8_24205001 chr3R_24205001 RAL-819 3337 chr3R 24207208 24207244 chr3R 24212293 24212345 flea 28 5094 25.5 20.5 23.0 1.2 5137 chr3R 24207208 intron twin - chr3R 24209776 intron twin - chr3R 24212345 intron twin - chr3R_28_24205001 chr3R_24205001 RAL-819 3338 chr3R 24377759 24377765 chr3R 24377906 24377912 8 147 31.0 0.0 15.5 0.5 153 chr3R 24377759 intergenic CG33342 + chr3R 24377836 intergenic CG33342 + chr3R 24377912 intergenic CG33342 + chr3R_8_24375001 chr3R_24375001 RAL-819 3339 chr3R 21907534 21907535 chr3R 24389465 24389465 12 2481930 69.0 50.5 59.8 0.2 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_12_23145001 chr3R_23145001 RAL-819 3340 chr3R 24424630 24424673 chr3R 24424801 24424844 31 170 22.0 8.5 15.2 1.9 214 chr3R 24424630 intron nAChRalpha1 - chr3R 24424737 intron nAChRalpha1 - chr3R 24424844 intron nAChRalpha1 - chr3R_31_24420001 chr3R_24420001 RAL-819 3341 chr3R 24433469 24433483 chr3R 24433573 24433582 12 103 6.5 24.5 15.5 0.7 113 chr3R 24433469 intron nAChRalpha1 - chr3R 24433526 intron nAChRalpha1 - chr3R 24433582 intron nAChRalpha1 - chr3R_12_24430001 chr3R_24430001 RAL-819 3342 chr3R 24433485 24433488 chr3R 24433589 24433592 5 104 6.5 30.0 18.2 0.3 107 chr3R 24433485 intron nAChRalpha1 - chr3R 24433538 intron nAChRalpha1 - chr3R 24433592 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-819 3343 chr3R 24433489 24433502 chr3R 24433587 24433606 10 103 6.0 29.5 17.8 0.5 117 chr3R 24433489 intron nAChRalpha1 - chr3R 24433548 intron nAChRalpha1 - chr3R 24433606 intron nAChRalpha1 - chr3R_10_24430001 chr3R_24430001 RAL-819 3344 chr3R 24435975 24435990 chr3R 24436100 24436114 8 121 33.0 24.0 28.5 0.3 139 chr3R 24435975 intron nAChRalpha1 - chr3R 24436044 intron nAChRalpha1 - chr3R 24436114 intron nAChRalpha1 - chr3R_8_24435001 chr3R_24435001 RAL-819 3345 chr3R 24435992 24435998 chr3R 24436097 24436116 4 113 29.0 22.0 25.5 0.2 124 chr3R 24435992 intron nAChRalpha1 - chr3R 24436054 intron nAChRalpha1 - chr3R 24436116 intron nAChRalpha1 - chr3R_4_24435001 chr3R_24435001 RAL-819 3346 chr3R 24436003 24436027 chr3R 24436096 24436152 18 113 13.5 20.5 17.0 1.0 149 chr3R 24436003 intron nAChRalpha1 - chr3R 24436078 intron nAChRalpha1 - chr3R 24436152 intron nAChRalpha1 - chr3R_18_24435001 chr3R_24435001 RAL-819 3347 chr3R 24482900 24482930 chr3R 24483013 24483038 13 109 26.0 17.0 21.5 0.6 138 chr3R 24482900 intergenic not near genes chr3R 24482969 intergenic not near genes chr3R 24483038 intergenic not near genes chr3R_13_24480001 chr3R_24480001 RAL-819 3348 chr3R 24484713 24484742 chr3R 24484833 24484844 34 119 29.0 30.5 29.8 1.1 131 chr3R 24484713 intergenic not near genes chr3R 24484778 intergenic not near genes chr3R 24484844 intergenic not near genes chr3R_34_24480001 chr3R_24480001 RAL-819 3349 chr3R 24493254 24493305 chr3R 24493508 24493559 BS 45 253 12.0 16.5 14.2 3.0 305 chr3R 24493254 intergenic not near genes chr3R 24493406 intergenic not near genes chr3R 24493559 intergenic not near genes chr3R_45_24490001 chr3R_24490001 RAL-819 3350 chr3R 24523875 24523924 chr3R 24523986 24524035 15 110 8.5 9.5 9.0 1.5 160 chr3R 24523875 intergenic CG13622 - chr3R 24523955 intergenic CG13622 - chr3R 24524035 intergenic CG13622 - chr3R_15_24520001 chr3R_24520001 RAL-819 3351 chr3R 24527778 24527836 chr3R 24527894 24527952 47 114 4.5 7.0 5.8 6.9 174 chr3R 24527778 intergenic CG13618 +,CG6607 + chr3R 24527865 intergenic CG6607 +,CG13618 + chr3R 24527952 intergenic CG6607 +,CG13618 + chr3R_47_24525001 chr3R_24525001 RAL-819 3352 chr3R 24594655 24594667 chr3R 24594920 24594932 pogo 6 264 7.0 18.0 12.5 0.4 277 chr3R 24594655 intron mld + chr3R 24594794 intron mld + chr3R 24594932 intron mld + chr3R_6_24590001 chr3R_24590001 RAL-819 3353 chr3R 24667580 24667630 chr3R 24667682 24667720 27 99 10.5 1.0 5.8 4.0 140 chr3R 24667580 intron slo + chr3R 24667650 intron slo + chr3R 24667720 intron slo + chr3R_27_24665001 chr3R_24665001 RAL-819 3354 chr3R 24670141 24670151 chr3R 24670250 24670260 11 109 11.0 15.5 13.2 0.8 119 chr3R 24670141 intron slo + chr3R 24670200 intron slo + chr3R 24670260 intron slo + chr3R_11_24670001 chr3R_24670001 RAL-819 3355 chr3R 24670155 24670199 chr3R 24670249 24670308 22 107 5.5 15.0 10.2 2.0 153 chr3R 24670155 intron slo + chr3R 24670232 intron slo + chr3R 24670308 intron slo + chr3R_22_24670001 chr3R_24670001 RAL-819 3356 chr3R 24671193 24671254 chr3R 24671295 24671356 34 97 7.5 9.5 8.5 3.6 163 chr3R 24671193 intron slo + chr3R 24671274 intron slo + chr3R 24671356 intron slo + chr3R_34_24670001 chr3R_24670001 RAL-819 3357 chr3R 24730074 24730076 chr3R 24732471 24732479 Doc 5 2402 38.5 2.0 20.2 0.2 2405 chr3R 24730074 intron tok + chr3R 24731276 intron tok + chr3R 24732479 intron tok + chr3R_5_24730001 chr3R_24730001 RAL-819 3358 chr3R 24730077 24730112 chr3R 24732470 24732474 Doc 24 2396 20.5 2.0 11.2 2.0 2397 chr3R 24730077 intron tok + chr3R 24731276 intron tok + chr3R 24732474 intron tok + chr3R_24_24730001 chr3R_24730001 RAL-819 3359 chr3R 24743005 24743060 chr3R 24743115 24743169 33 109 8.0 9.5 8.8 3.4 164 chr3R 24743005 intron tok + chr3R 24743087 intron tok + chr3R 24743169 exon tok + chr3R_33_24740001 chr3R_24740001 RAL-819 3360 chr3R 24785056 24785112 chr3R 24785157 24785205 42 95 15.5 20.5 18.0 2.2 149 chr3R 24785056 3` UTR CG5805 - chr3R 24785130 3` UTR CG5805 - chr3R 24785205 3` UTR CG5805 - chr3R_42_24785001 chr3R_24785001 RAL-819 3361 chr3R 24789957 24790012 chr3R 24790127 24790182 38 168 10.5 10.5 10.5 3.3 225 chr3R 24789957 intron,5` UTR Ets96B +,CG13634 - chr3R 24790070 intron,5` UTR Ets96B +,CG13634 - chr3R 24790182 intron Ets96B + chr3R_38_24790001 chr3R_24790001 RAL-819 3362 chr3R 24825591 24825634 chr3R 24825709 24825740 7 113 17.5 0.0 8.8 0.7 149 chr3R 24825591 5` UTR niki - chr3R 24825666 intergenic niki -,CG43166 - chr3R 24825740 intergenic CG43166 -,niki - chr3R_7_24825001 chr3R_24825001 RAL-819 3363 chr3R 24842078 24842134 chr3R 24842189 24842245 51 109 16.0 16.5 16.2 3.0 167 chr3R 24842078 5` UTR Esp + chr3R 24842162 5` UTR Esp + chr3R 24842245 5` UTR Esp + chr3R_51_24840001 chr3R_24840001 RAL-819 3364 chr3R 24845971 24846023 chr3R 24846086 24846138 38 112 7.5 17.0 12.2 2.9 167 chr3R 24845971 intron Esp + chr3R 24846054 intron Esp + chr3R 24846138 intron Esp + chr3R_38_24845001 chr3R_24845001 RAL-819 3365 chr3R 24912461 24912514 chr3R 24912562 24912621 43 105 11.0 7.0 9.0 4.3 160 chr3R 24912461 intergenic not near genes chr3R 24912541 intergenic CR44267 + chr3R 24912621 intergenic CR44267 + chr3R_43_24910001 chr3R_24910001 RAL-819 3366 chr3R 24927107 24927120 chr3R 24931923 24931936 Doc 10 4816 31.5 19.0 25.2 0.4 4829 chr3R 24927107 intergenic Trf4-2 + chr3R 24929522 intergenic not near genes chr3R 24931936 intergenic CG11771 + chr3R_10_24925001 chr3R_24925001 RAL-819 3367 chr3R 24927122 24927157 chr3R 24931920 24931927 Doc 28 4810 15.5 18.5 17.0 1.6 4805 chr3R 24927122 intergenic Trf4-2 + chr3R 24929524 intergenic not near genes chr3R 24931927 intergenic CG11771 + chr3R_28_24925001 chr3R_24925001 RAL-819 3368 chr3R 25008199 25008221 chr3R 25008289 25008307 21 99 17.5 38.0 27.8 0.7 108 chr3R 25008199 intron tnc + chr3R 25008253 intron tnc + chr3R 25008307 intron tnc + chr3R_21_25005001 chr3R_25005001 RAL-819 3369 chr3R 25072740 25072789 chr3R 25072855 25072906 41 116 15.5 10.0 12.8 3.0 166 chr3R 25072740 3` UTR CG9996 - chr3R 25072823 3` UTR CG9996 - chr3R 25072906 exon CG9996 - chr3R_41_25070001 chr3R_25070001 RAL-819 3370 chr3R 25126032 25126063 chr3R 25126646 25126682 4 618 65.5 72.0 68.8 0.1 650 chr3R 25126032 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126357 3` UTR,exon CG42503 -,Mocs2 - chr3R 25126682 3` UTR,exon CG42503 -,Mocs2 - chr3R_4_25125001 chr3R_25125001 RAL-819 3371 chr3R 25166229 25166395 chr3R 25166334 25166496 48 102 0.5 0.0 0.2 40.0 267 chr3R 25166229 intergenic not near genes chr3R 25166362 intergenic not near genes chr3R 25166496 intergenic not near genes chr3R_48_25165001 chr3R_25165001 RAL-819 3372 chr3R 25209573 25209630 chr3R 25209680 25209736 56 103 1.0 23.5 12.2 4.2 163 chr3R 25209573 intron CG13654 + chr3R 25209654 intron CG13654 + chr3R 25209736 intron CG13654 + chr3R_56_25205001 chr3R_25205001 RAL-819 3373 chr3R 25268076 25268091 chr3R 25272651 25272655 7 4567 32.5 61.5 47.0 0.1 4579 chr3R 25268076 intron CR45214 - chr3R 25270366 exon,5` UTR CG11889 +,CG11891 + chr3R 25272655 3` UTR,exon CG11889 +,CG11891 + chr3R_7_25270001 chr3R_25270001 RAL-819 3374 chr3R 25352456 25352513 chr3R 25352626 25352683 40 168 10.5 9.0 9.8 3.7 227 chr3R 25352456 intron Fur1 - chr3R 25352570 intron Fur1 - chr3R 25352683 intron Fur1 - chr3R_40_25350001 chr3R_25350001 RAL-819 3375 chr3R 25368456 25368505 chr3R 25368599 25368646 28 142 5.0 13.5 9.2 2.7 190 chr3R 25368456 intron Fur1 - chr3R 25368551 intron Fur1 - chr3R 25368646 intron Fur1 - chr3R_28_25365001 chr3R_25365001 RAL-819 3376 chr3R 25402224 25402266 chr3R 25402325 25402367 13 100 10.5 7.5 9.0 1.3 143 chr3R 25402224 intron Fur1 - chr3R 25402296 intron Fur1 - chr3R 25402367 intron Fur1 - chr3R_13_25400001 chr3R_25400001 RAL-819 3377 chr3R 25436467 25436517 chr3R 25436585 25436595 34 113 9.0 14.0 11.5 2.7 128 chr3R 25436467 intron Fur1 - chr3R 25436531 intron Fur1 - chr3R 25436595 intron Fur1 - chr3R_34_25435001 chr3R_25435001 RAL-819 3378 chr3R 25448009 25448039 chr3R 25448147 25448177 17 138 21.0 8.5 14.8 1.1 168 chr3R 25448009 intron Fur1 - chr3R 25448093 intron Fur1 - chr3R 25448177 intron Fur1 - chr3R_17_25445001 chr3R_25445001 RAL-819 3379 chr3R 25448042 25448065 chr3R 25448145 25448203 14 133 10.5 8.5 9.5 1.3 161 chr3R 25448042 intron Fur1 - chr3R 25448122 intron Fur1 - chr3R 25448203 intron Fur1 - chr3R_14_25445001 chr3R_25445001 RAL-819 3380 chr3R 7773342 7773344 chr3R 25538124 25538125 4 17764781 41.0 49.5 45.2 0.1 17764783 chr3R 7773342 intergenic not near genes chr3R 16655734 intergenic modSP - chr3R 25538125 intron msi + chr3R_4_16655001 chr3R_16655001 RAL-819 3381 chr3R 25571864 25571873 chr3R 25571977 25571986 8 113 9.5 10.0 9.8 0.7 122 chr3R 25571864 intron msi + chr3R 25571925 intron msi + chr3R 25571986 intron msi + chr3R_8_25570001 chr3R_25570001 RAL-819 3382 chr3R 25573054 25573059 chr3R 25573163 25573165 4 107 32.0 6.0 19.0 0.2 111 chr3R 25573054 intron msi + chr3R 25573110 intron msi + chr3R 25573165 intron msi + chr3R_4_25570001 chr3R_25570001 RAL-819 3383 chr3R 25573064 25573104 chr3R 25573160 25573213 39 106 14.5 5.5 10.0 3.5 149 chr3R 25573064 intron msi + chr3R 25573138 intron msi + chr3R 25573213 intron msi + chr3R_39_25570001 chr3R_25570001 RAL-819 3384 chr3R 25573629 25573685 chr3R 25573746 25573792 44 113 12.0 6.5 9.2 4.3 163 chr3R 25573629 intron msi + chr3R 25573710 intron msi + chr3R 25573792 intron msi + chr3R_44_25570001 chr3R_25570001 RAL-819 3385 chr3R 25689101 25689160 chr3R 25689234 25689255 39 129 15.0 13.0 14.0 2.6 154 chr3R 25689101 intergenic not near genes chr3R 25689178 intergenic not near genes chr3R 25689255 intergenic not near genes chr3R_39_25685001 chr3R_25685001 RAL-819 3386 chr3R 25725806 25725859 chr3R 25734991 25735044 roo 29 9185 8.5 12.5 10.5 2.5 9238 chr3R 25725806 intron LpR2 - chr3R 25730425 intron LpR2 - chr3R 25735044 intron LpR2 - chr3R_29_25730001 chr3R_25730001 RAL-819 3387 chr3R 25781992 25782046 chr3R 25782093 25782147 49 98 14.0 16.0 15.0 3.1 155 chr3R 25781992 intergenic not near genes chr3R 25782070 intergenic not near genes chr3R 25782147 intergenic not near genes chr3R_49_25780001 chr3R_25780001 RAL-819 3388 chr3R 25789182 25789238 chr3R 25789285 25789341 49 100 9.0 14.5 11.8 3.8 159 chr3R 25789182 exon CG31380 - chr3R 25789262 exon CG31380 - chr3R 25789341 exon CG31380 - chr3R_49_25785001 chr3R_25785001 RAL-819 3389 chr3R 25831257 25831261 chr3R 25831516 25831520 4 259 44.0 0.5 22.2 0.2 263 chr3R 25831257 intergenic Mst57Da -,Mst57Db - chr3R 25831388 intergenic Mst57Da -,Mst57Db - chr3R 25831520 intergenic Mst57Da - chr3R_4_25830001 chr3R_25830001 RAL-819 3390 chr3R 25832674 25832700 chr3R 25841881 25841907 roo 19 9204 26.0 19.5 22.8 0.8 9233 chr3R 25832674 exon alpha4GT2 + chr3R 25837290 intron alpha4GT2 + chr3R 25841907 exon alpha4GT2 + chr3R_19_25835001 chr3R_25835001 RAL-819 3391 chr3R 25832702 25832716 chr3R 25841873 25841923 roo 15 9199 18.5 15.5 17.0 0.8 9221 chr3R 25832702 exon alpha4GT2 + chr3R 25837312 intron alpha4GT2 + chr3R 25841923 exon alpha4GT2 + chr3R_15_25835001 chr3R_25835001 RAL-819 3392 chr3R 25843618 25843669 chr3R 25843768 25843817 37 153 4.5 12.5 8.5 3.9 199 chr3R 25843618 intergenic CR45653 + chr3R 25843718 intergenic CR45653 + chr3R 25843817 intergenic CR45653 + chr3R_37_25840001 chr3R_25840001 RAL-819 3393 chr3R 25861799 25861848 chr3R 25861901 25861950 35 100 14.0 13.0 13.5 2.4 151 chr3R 25861799 intron CG5890 + chr3R 25861874 intron CG5890 + chr3R 25861950 intron CG5890 + chr3R_35_25860001 chr3R_25860001 RAL-819 3394 chr3R 25927484 25927538 chr3R 25927591 25927604 50 104 12.0 15.0 13.5 3.4 120 chr3R 25927484 intron CCAP-R - chr3R 25927544 intron CCAP-R - chr3R 25927604 intron CCAP-R - chr3R_50_25925001 chr3R_25925001 RAL-819 3395 chr3R 25962027 25962076 chr3R 25962148 25962197 37 120 12.0 10.0 11.0 3.1 170 chr3R 25962027 5` UTR boss + chr3R 25962112 intron boss + chr3R 25962197 intron boss + chr3R_37_25960001 chr3R_25960001 RAL-819 3396 chr3R 25997227 25997266 chr3R 25997339 25997378 28 111 12.0 9.0 10.5 2.4 151 chr3R 25997227 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997302 intergenic CG43116 -,E(spl)mdelta-HLH + chr3R 25997378 intergenic E(spl)mdelta-HLH +,CG43116 - chr3R_28_25995001 chr3R_25995001 RAL-819 3397 chr3R 26108805 26108857 chr3R 26117408 26117423 Tirant 20 8601 10.5 0.5 5.5 3.1 8618 chr3R 26108805 5` UTR CG31324 + chr3R 26113114 intron CG31324 + chr3R 26117423 intron CG31324 + chr3R_20_26110001 chr3R_26110001 RAL-819 3398 chr3R 26122436 26122480 chr3R 26122537 26122581 39 97 17.5 21.0 19.2 1.9 145 chr3R 26122436 intron CG31324 + chr3R 26122508 intron CG31324 + chr3R 26122581 intron CG31324 + chr3R_39_26120001 chr3R_26120001 RAL-819 3399 chr3R 26126526 26126570 chr3R 26126637 26126681 44 110 10.0 21.0 15.5 2.7 155 chr3R 26126526 intron CG31324 + chr3R 26126604 intron CG31324 + chr3R 26126681 intron,5` UTR CG31324 +,CG14556 + chr3R_44_26125001 chr3R_26125001 RAL-819 3400 chr3R 26140018 26140024 chr3R 26140085 26140119 5 89 8.0 12.0 10.0 0.5 101 chr3R 26140018 intergenic not near genes chr3R 26140068 intergenic not near genes chr3R 26140119 intergenic not near genes chr3R_5_26140001 chr3R_26140001 RAL-819 3401 chr3R 26166617 26166670 chr3R 26166735 26166788 41 116 13.5 15.0 14.2 2.7 171 chr3R 26166617 intergenic not near genes chr3R 26166702 intergenic not near genes chr3R 26166788 intergenic not near genes chr3R_41_26165001 chr3R_26165001 RAL-819 3402 chr3R 26193314 26193364 chr3R 26193421 26193471 41 106 12.5 13.0 12.8 3.0 157 chr3R 26193314 intergenic not near genes chr3R 26193392 intergenic not near genes chr3R 26193471 intergenic not near genes chr3R_41_26190001 chr3R_26190001 RAL-819 3403 chr3R 26215763 26215803 chr3R 26221744 26221782 297 11 5978 12.5 12.5 12.5 0.8 6019 chr3R 26215763 intergenic not near genes chr3R 26218772 intergenic not near genes chr3R 26221782 intergenic not near genes chr3R_11_26215001 chr3R_26215001 RAL-819 3404 chr3R 26294697 26294748 chr3R 26294795 26294851 38 101 9.5 9.5 9.5 3.6 154 chr3R 26294697 intergenic not near genes chr3R 26294774 intergenic not near genes chr3R 26294851 intergenic not near genes chr3R_38_26290001 chr3R_26290001 RAL-819 3405 chr3R 26295994 26296008 chr3R 26296140 26296154 7 144 8.0 24.0 16.0 0.4 160 chr3R 26295994 intergenic not near genes chr3R 26296074 intergenic not near genes chr3R 26296154 intergenic not near genes chr3R_7_26295001 chr3R_26295001 RAL-819 3406 chr3R 26326670 26326677 chr3R 26326773 26326780 4 103 10.0 15.0 12.5 0.3 110 chr3R 26326670 intron CG33970 + chr3R 26326725 intron CG33970 + chr3R 26326780 intron CG33970 + chr3R_4_26325001 chr3R_26325001 RAL-819 3407 chr3R 26338919 26338944 chr3R 26339024 26339065 15 111 10.5 11.5 11.0 1.2 146 chr3R 26338919 intron CG33970 + chr3R 26338992 intron CG33970 + chr3R 26339065 intron CG33970 + chr3R_15_26335001 chr3R_26335001 RAL-819 3408 chr3R 26349241 26349264 chr3R 26349362 26349385 11 120 7.5 0.0 3.8 2.3 144 chr3R 26349241 intron CG33970 + chr3R 26349313 intron CG33970 + chr3R 26349385 intron CG33970 + chr3R_11_26345001 chr3R_26345001 RAL-819 3409 chr3R 26376301 26376314 chr3R 26385486 26385499 roo 8 9185 28.0 3.0 15.5 0.5 9198 chr3R 26376301 intergenic not near genes chr3R 26380900 intergenic not near genes chr3R 26385499 intergenic not near genes chr3R_8_26380001 chr3R_26380001 RAL-819 3410 chr3R 26376316 26376355 chr3R 26385485 26385485 roo 24 9180 15.0 3.0 9.0 2.4 9169 chr3R 26376316 intergenic not near genes chr3R 26380900 intergenic not near genes chr3R 26385485 intergenic not near genes chr3R_24_26380001 chr3R_26380001 RAL-819 3411 chr3R 26502266 26502321 chr3R 26502382 26502436 46 114 2.0 13.5 7.8 5.2 170 chr3R 26502266 intron plum - chr3R 26502351 intron plum - chr3R 26502436 intron plum - chr3R_46_26500001 chr3R_26500001 RAL-819 3412 chr3R 26510485 26510534 chr3R 26519571 26519620 roo 45 9086 12.5 17.5 15.0 2.8 9135 chr3R 26510485 intron plum - chr3R 26515052 intron plum - chr3R 26519620 intron,5` UTR plum -,CR45226 + chr3R_45_26515001 chr3R_26515001 RAL-819 3413 chr3R 26529321 26529379 chr3R 26529429 26529487 42 108 10.0 1.0 5.5 6.5 166 chr3R 26529321 intron plum - chr3R 26529404 intron plum - chr3R 26529487 intron plum - chr3R_42_26525001 chr3R_26525001 RAL-819 3414 chr3R 26540972 26541032 chr3R 26541077 26541136 32 102 5.5 8.5 7.0 4.0 164 chr3R 26540972 intron scrib + chr3R 26541054 intron scrib + chr3R 26541136 intron scrib + chr3R_32_26540001 chr3R_26540001 RAL-819 3415 chr3R 26542019 26542079 chr3R 26542135 26542176 44 107 9.0 8.0 8.5 4.6 157 chr3R 26542019 intron scrib + chr3R 26542098 intron scrib + chr3R 26542176 intron scrib + chr3R_44_26540001 chr3R_26540001 RAL-819 3416 chr3R 26558300 26558361 chr3R 26565638 26565661 Stalker4 36 7325 9.0 9.5 9.2 3.5 7361 chr3R 26558300 intron scrib + chr3R 26561980 intron scrib + chr3R 26565661 intron scrib + chr3R_36_26560001 chr3R_26560001 RAL-819 3417 chr3R 26607713 26607769 chr3R 26607814 26607870 51 100 17.5 21.5 19.5 2.5 157 chr3R 26607713 5` UTR CR44951 + chr3R 26607792 5` UTR CR44951 + chr3R 26607870 5` UTR CR44951 + chr3R_51_26605001 chr3R_26605001 RAL-819 3418 chr3R 26623646 26623674 chr3R 26623735 26623783 38 101 11.5 9.0 10.2 3.4 137 chr3R 26623646 intergenic TwdlB - chr3R 26623714 intergenic TwdlB - chr3R 26623783 intergenic TwdlB - chr3R_38_26620001 chr3R_26620001 RAL-819 3419 chr3R 26641612 26641663 chr3R 26641724 26641775 47 108 11.5 13.5 12.5 3.5 163 chr3R 26641612 intergenic not near genes chr3R 26641694 intergenic not near genes chr3R 26641775 intergenic not near genes chr3R_47_26640001 chr3R_26640001 RAL-819 3420 chr3R 26642707 26642761 chr3R 26643125 26643180 jockey 31 417 12.5 12.5 12.5 2.3 473 chr3R 26642707 intergenic not near genes chr3R 26642944 intergenic not near genes chr3R 26643180 intergenic not near genes chr3R_31_26640001 chr3R_26640001 RAL-819 3421 chr3R 26734003 26734018 chr3R 26734112 26734127 11 109 1.5 19.0 10.2 1.0 124 chr3R 26734003 intergenic not near genes chr3R 26734065 intergenic not near genes chr3R 26734127 intergenic not near genes chr3R_11_26730001 chr3R_26730001 RAL-819 3422 chr3R 26734019 26734054 chr3R 26734108 26734163 30 106 1.0 16.5 8.8 3.1 144 chr3R 26734019 intergenic not near genes chr3R 26734091 intergenic not near genes chr3R 26734163 intergenic not near genes chr3R_30_26730001 chr3R_26730001 RAL-819 3423 chr3R 26770215 26770271 chr3R 26770317 26770373 37 99 14.5 11.0 12.8 2.7 158 chr3R 26770215 intergenic CR45563 + chr3R 26770294 intergenic CR45563 + chr3R 26770373 intergenic not near genes chr3R_37_26770001 chr3R_26770001 RAL-819 3424 chr3R 26789583 26789607 chr3R 26789687 26789701 14 103 0.0 0.5 0.2 11.7 118 chr3R 26789583 intergenic not near genes chr3R 26789642 intergenic not near genes chr3R 26789701 intergenic not near genes chr3R_14_26785001 chr3R_26785001 RAL-819 3425 chr3R 26796119 26796172 chr3R 26796322 26796366 55 206 15.5 12.5 14.0 3.7 247 chr3R 26796119 intergenic not near genes chr3R 26796242 intergenic not near genes chr3R 26796366 intergenic not near genes chr3R_55_26795001 chr3R_26795001 RAL-819 3426 chr3R 26810526 26810581 chr3R 26811036 26811091 roo 34 510 10.0 19.0 14.5 2.2 565 chr3R 26810526 intron Tl + chr3R 26810808 intron Tl + chr3R 26811091 intron Tl + chr3R_34_26810001 chr3R_26810001 RAL-819 3427 chr3R 26901481 26901529 chr3R 26901591 26901634 12 107 9.5 0.0 4.8 2.1 153 chr3R 26901481 intron T48 + chr3R 26901558 intron T48 + chr3R 26901634 intron T48 + chr3R_12_26900001 chr3R_26900001 RAL-819 3428 chr3R 26917267 26917325 chr3R 26917375 26917433 37 106 11.5 13.5 12.5 2.7 166 chr3R 26917267 intron sda + chr3R 26917350 intron sda + chr3R 26917433 intron sda + chr3R_37_26915001 chr3R_26915001 RAL-819 3429 chr3R 26923316 26923368 chr3R 26923681 26923724 23 365 8.0 14.0 11.0 1.9 408 chr3R 26923316 intron sda + chr3R 26923520 intron sda + chr3R 26923724 intron sda + chr3R_23_26920001 chr3R_26920001 RAL-819 3430 chr3R 27007381 27007438 chr3R 27016541 27016591 roo 36 9150 13.5 7.0 10.2 3.2 9210 chr3R 27007381 intron RYa-R + chr3R 27011986 intron RYa-R + chr3R 27016591 intron RYa-R + chr3R_36_27010001 chr3R_27010001 RAL-819 3431 chr3R 27027655 27027705 chr3R 27027764 27027812 22 108 9.0 8.0 8.5 2.3 157 chr3R 27027655 intron RYa-R + chr3R 27027734 intron RYa-R + chr3R 27027812 intron RYa-R + chr3R_22_27025001 chr3R_27025001 RAL-819 3432 chr3R 27028697 27028756 chr3R 27028801 27028860 40 101 6.5 7.5 7.0 5.0 163 chr3R 27028697 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028860 intron RYa-R + chr3R_40_27025001 chr3R_27025001 RAL-819 3433 chr3R 27043296 27043345 chr3R 27043402 27043460 29 108 7.0 9.5 8.2 3.2 164 chr3R 27043296 intron RYa-R + chr3R 27043378 intron RYa-R + chr3R 27043460 intron RYa-R + chr3R_29_27040001 chr3R_27040001 RAL-819 3434 chr3R 27133495 27133544 chr3R 27133637 27133686 28 140 15.5 15.0 15.2 1.7 191 chr3R 27133495 intron CG6051 - chr3R 27133590 intron CG6051 - chr3R 27133686 intron CG6051 - chr3R_28_27130001 chr3R_27130001 RAL-819 3435 chr3R 27140490 27140545 chr3R 27148125 27148180 412 53 7632 21.5 19.0 20.2 2.5 7690 chr3R 27140490 intron CG6051 - chr3R 27144335 intron CG6051 - chr3R 27148180 intron CG6051 - chr3R_53_27140001 chr3R_27140001 RAL-819 3436 chr3R 27195551 27195607 chr3R 27195662 27195718 50 107 12.0 10.5 11.2 4.1 167 chr3R 27195551 intergenic not near genes chr3R 27195634 intergenic not near genes chr3R 27195718 intergenic not near genes chr3R_50_27195001 chr3R_27195001 RAL-819 3437 chr3R 27329448 27329502 chr3R 27329550 27329604 33 102 13.5 11.5 12.5 2.4 156 chr3R 27329448 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329604 intergenic CG3330 - chr3R_33_27325001 chr3R_27325001 RAL-819 3438 chr3R 27335921 27335964 chr3R 27336027 27336070 20 104 4.5 0.5 2.5 5.7 149 chr3R 27335921 intergenic not near genes chr3R 27335996 intergenic not near genes chr3R 27336070 intergenic not near genes chr3R_20_27335001 chr3R_27335001 RAL-819 3439 chr3R 27342766 27342824 chr3R 27351372 27351430 Tirant 44 8603 16.5 17.0 16.8 2.5 8664 chr3R 27342766 intron CG42534 + chr3R 27347098 intron CG42534 + chr3R 27351430 intron CG42534 + chr3R_44_27345001 chr3R_27345001 RAL-819 3440 chr3R 27445221 27445278 chr3R 27445323 27445371 41 97 10.0 17.0 13.5 2.8 150 chr3R 27445221 intergenic not near genes chr3R 27445296 intergenic not near genes chr3R 27445371 intergenic not near genes chr3R_41_27445001 chr3R_27445001 RAL-819 3441 chr3R 27468433 27468486 chr3R 27468874 27468927 31 439 7.5 8.0 7.8 3.5 494 chr3R 27468433 intergenic not near genes chr3R 27468680 intergenic not near genes chr3R 27468927 intergenic not near genes chr3R_31_27465001 chr3R_27465001 RAL-819 3442 chr3R 27470858 27470913 chr3R 27470996 27471026 42 136 16.0 11.5 13.8 2.8 168 chr3R 27470858 intergenic not near genes chr3R 27470942 intergenic not near genes chr3R 27471026 intergenic not near genes chr3R_42_27470001 chr3R_27470001 RAL-819 3443 chr3R 27492358 27492409 chr3R 27492470 27492501 27 104 8.0 1.0 4.5 4.9 143 chr3R 27492358 intergenic not near genes chr3R 27492430 intergenic not near genes chr3R 27492501 intergenic not near genes chr3R_27_27490001 chr3R_27490001 RAL-819 3444 chr3R 27496567 27496603 chr3R 27496696 27496701 32 124 20.5 14.5 17.5 1.7 134 chr3R 27496567 intergenic not near genes chr3R 27496634 intergenic not near genes chr3R 27496701 intergenic not near genes chr3R_32_27495001 chr3R_27495001 RAL-819 3445 chr3R 27517407 27517460 chr3R 27517537 27517590 53 128 12.5 13.0 12.8 3.8 183 chr3R 27517407 intergenic CG13972 - chr3R 27517498 intergenic CG13972 - chr3R 27517590 intergenic CG13972 - chr3R_53_27515001 chr3R_27515001 RAL-819 3446 chr3R 27521139 27521187 chr3R 27530373 27530399 roo 39 9232 12.0 13.0 12.5 2.9 9260 chr3R 27521139 intron CG12885 + chr3R 27525769 intron CG12885 + chr3R 27530399 intron CG12885 + chr3R_39_27525001 chr3R_27525001 RAL-819 3447 chr3R 27595026 27595085 chr3R 27595134 27595193 40 107 10.0 14.5 12.2 3.0 167 chr3R 27595026 intron CG5639 - chr3R 27595110 intron CG5639 - chr3R 27595193 intron CG5639 - chr3R_40_27595001 chr3R_27595001 RAL-819 3448 chr3R 27627061 27627120 chr3R 27627188 27627247 76 122 14.0 8.5 11.2 6.2 186 chr3R 27627061 intron Tusp + chr3R 27627154 intron Tusp + chr3R 27627247 intron Tusp + chr3R_76_27625001 chr3R_27625001 RAL-819 3449 chr3R 27706752 27706806 chr3R 27706854 27706898 31 101 15.5 13.0 14.2 2.0 146 chr3R 27706752 intergenic CG12428 -,CG12877 + chr3R 27706825 intergenic CG12428 -,CG12877 + chr3R 27706898 intergenic CG12428 -,CG12877 + chr3R_31_27705001 chr3R_27705001 RAL-819 3450 chr3R 27718551 27718599 chr3R 27718655 27718703 36 101 12.0 14.5 13.2 2.5 152 chr3R 27718551 intergenic not near genes chr3R 27718627 intergenic not near genes chr3R 27718703 intergenic not near genes chr3R_36_27715001 chr3R_27715001 RAL-819 3451 chr3R 27725544 27725594 chr3R 27731010 27731053 I-element 16 5467 11.5 0.0 5.8 2.4 5509 chr3R 27725544 intergenic not near genes chr3R 27728298 intergenic not near genes chr3R 27731053 intergenic not near genes chr3R_16_27725001 chr3R_27725001 RAL-819 3452 chr3R 27779243 27779287 chr3R 27779348 27779392 33 100 7.0 20.0 13.5 2.3 149 chr3R 27779243 exon CG34353 - chr3R 27779318 intron CG34353 - chr3R 27779392 intron CG34353 - chr3R_33_27775001 chr3R_27775001 RAL-819 3453 chr3R 27799911 27799962 chr3R 27800018 27800069 43 107 11.0 12.0 11.5 3.4 158 chr3R 27799911 intron CG34353 - chr3R 27799990 intron CG34353 - chr3R 27800069 intron CG34353 - chr3R_43_27795001 chr3R_27795001 RAL-819 3454 chr3R 27829877 27829925 chr3R 27829981 27830029 28 99 15.0 9.0 12.0 2.2 152 chr3R 27829877 intron CG34353 - chr3R 27829953 intron CG34353 - chr3R 27830029 intron CG34353 - chr3R_28_27825001 chr3R_27825001 RAL-819 3455 chr3R 27856736 27856785 chr3R 27858244 27858288 hopper2 41 1505 18.0 14.5 16.2 2.4 1552 chr3R 27856736 intron CG34353 - chr3R 27857512 intron CG34353 - chr3R 27858288 intron CG34353 - chr3R_41_27855001 chr3R_27855001 RAL-819 3456 chr3R 27856787 27856788 chr3R 27858240 27858296 hopper2 5 1495 16.5 13.0 14.8 0.3 1509 chr3R 27856787 intron CG34353 - chr3R 27857542 intron CG34353 - chr3R 27858296 intron CG34353 - chr3R_5_27855001 chr3R_27855001 RAL-819 3457 chr3R 27862934 27862975 chr3R 27868263 27868305 Transpac 26 5328 18.5 13.5 16.0 1.5 5371 chr3R 27862934 intron CG34353 - chr3R 27865620 intron CG34353 - chr3R 27868305 intron CG34353 - chr3R_26_27865001 chr3R_27865001 RAL-819 3458 chr3R 27862976 27862987 chr3R 27868259 27868262 Transpac 13 5305 12.5 12.5 12.5 1.0 5286 chr3R 27862976 intron CG34353 - chr3R 27865619 intron CG34353 - chr3R 27868262 intron CG34353 - chr3R_13_27865001 chr3R_27865001 RAL-819 3459 chr3R 27871029 27871087 chr3R 27871155 27871213 54 122 17.0 20.5 18.8 2.7 184 chr3R 27871029 intron CG34353 - chr3R 27871121 intron CG34353 - chr3R 27871213 intron CG34353 - chr3R_54_27870001 chr3R_27870001 RAL-819 3460 chr3R 27875676 27875729 chr3R 27882756 27882809 297 29 7078 8.5 15.5 12.0 2.2 7133 chr3R 27875676 intron CG34353 - chr3R 27879242 intron CG34353 - chr3R 27882809 intron CG34353 - chr3R_29_27875001 chr3R_27875001 RAL-819 3461 chr3R 27885820 27885867 chr3R 27885921 27885968 35 98 12.0 9.5 10.8 3.0 148 chr3R 27885820 intron CG34353 - chr3R 27885894 intron CG34353 - chr3R 27885968 intron CG34353 - chr3R_35_27885001 chr3R_27885001 RAL-819 3462 chr3R 27957212 27957260 chr3R 27957353 27957408 48 146 9.0 6.5 7.8 5.5 196 chr3R 27957212 exon CG5527 + chr3R 27957310 3` UTR CG5527 + chr3R 27957408 3` UTR,3` UTR CG42487 -,CG4884 - chr3R_48_27955001 chr3R_27955001 RAL-819 3463 chr3R 28019566 28019587 chr3R 28019683 28019704 17 117 11.5 7.0 9.2 1.7 138 chr3R 28019566 intergenic not near genes chr3R 28019635 intergenic not near genes chr3R 28019704 intergenic not near genes chr3R_17_28015001 chr3R_28015001 RAL-819 3464 chr3R 28066753 28066805 chr3R 28066861 28066913 38 102 12.0 13.5 12.8 2.8 160 chr3R 28066753 intron CG34362 + chr3R 28066833 intron CG34362 + chr3R 28066913 intron CG34362 + chr3R_38_28065001 chr3R_28065001 RAL-819 3465 chr3R 28068476 28068532 chr3R 28073940 28073943 I-element 31 5462 2.5 14.5 8.5 3.3 5467 chr3R 28068476 intron CG34362 + chr3R 28071210 intron CG34362 + chr3R 28073943 intron CG34362 + chr3R_31_28070001 chr3R_28070001 RAL-819 3466 chr3R 28080707 28080709 chr3R 28080822 28080823 4 115 33.0 8.0 20.5 0.2 116 chr3R 28080707 intron CG34362 + chr3R 28080765 intron CG34362 + chr3R 28080823 intron CG34362 + chr3R_4_28080001 chr3R_28080001 RAL-819 3467 chr3R 28080711 28080758 chr3R 28080819 28080821 23 109 13.0 7.0 10.0 2.1 110 chr3R 28080711 intron CG34362 + chr3R 28080766 intron CG34362 + chr3R 28080821 intron CG34362 + chr3R_23_28080001 chr3R_28080001 RAL-819 3468 chr3R 28118836 28118882 chr3R 28118934 28118987 32 100 9.5 10.5 10.0 2.9 151 chr3R 28118836 intergenic not near genes chr3R 28118912 intergenic not near genes chr3R 28118987 intergenic not near genes chr3R_32_28115001 chr3R_28115001 RAL-819 3469 chr3R 28173647 28173704 chr3R 28181102 28181159 mdg1 36 7454 9.5 14.5 12.0 2.8 7512 chr3R 28173647 intron CG34354 + chr3R 28177403 intron CG34354 + chr3R 28181159 intron CG34354 + chr3R_36_28175001 chr3R_28175001 RAL-819 3470 chr3R 19754551 19754553 chr3R 28215322 28215324 4 8460771 58.5 45.0 51.8 0.1 8460773 chr3R 19754551 intron GluClalpha + chr3R 23984938 5` UTR CR31451 + chr3R 28215324 intron CG34354 + chr3R_4_23980001 chr3R_23980001 RAL-819 3471 chr3R 28223235 28223242 chr3R 28223346 28223353 4 111 28.0 5.5 16.8 0.2 118 chr3R 28223235 intron CG34354 + chr3R 28223294 intron CG34354 + chr3R 28223353 intron CG34354 + chr3R_4_28220001 chr3R_28220001 RAL-819 3472 chr3R 28223246 28223248 chr3R 28223340 28223354 4 102 27.0 3.0 15.0 0.2 108 chr3R 28223246 intron CG34354 + chr3R 28223300 intron CG34354 + chr3R 28223354 intron CG34354 + chr3R_4_28220001 chr3R_28220001 RAL-819 3473 chr3R 28223253 28223288 chr3R 28223339 28223374 17 104 10.5 3.0 6.8 2.2 121 chr3R 28223253 intron CG34354 + chr3R 28223314 intron CG34354 + chr3R 28223374 intron CG34354 + chr3R_17_28220001 chr3R_28220001 RAL-819 3474 chr3R 28234490 28234538 chr3R 28234594 28234630 15 89 10.0 5.5 7.8 1.7 140 chr3R 28234490 intron CG34354 + chr3R 28234560 intron CG34354 + chr3R 28234630 intron CG34354 + chr3R_15_28230001 chr3R_28230001 RAL-819 3475 chr3R 28253333 28253373 chr3R 28255851 28255853 jockey 38 2529 7.0 9.0 8.0 4.2 2520 chr3R 28253333 intergenic not near genes chr3R 28254593 intergenic not near genes chr3R 28255853 intergenic not near genes chr3R_38_28250001 chr3R_28250001 RAL-819 3476 chr3R 28262650 28262685 chr3R 28262750 28262786 17 99 12.5 20.5 16.5 1.0 136 chr3R 28262650 intergenic CG43125 - chr3R 28262718 intergenic CG43125 - chr3R 28262786 exon CG43125 - chr3R_17_28260001 chr3R_28260001 RAL-819 3477 chr3R 28282969 28282984 chr3R 28283623 28283638 16 652 28.5 13.5 21.0 0.7 669 chr3R 28282969 exon CG34436 + chr3R 28283304 exon CG34436 + chr3R 28283638 intergenic CG34437 +,CG34436 + chr3R_16_28280001 chr3R_28280001 RAL-819 3478 chr3R 28282985 28283018 chr3R 28283618 28283662 28 651 9.5 12.0 10.8 2.4 677 chr3R 28282985 exon CG34436 + chr3R 28283324 exon CG34436 + chr3R 28283662 intergenic CG34437 +,CG34436 + chr3R_28_28280001 chr3R_28280001 RAL-819 3479 chr3R 28302079 28302117 chr3R 28302546 28302584 jockey 41 466 14.5 15.5 15.0 2.6 505 chr3R 28302079 intergenic not near genes chr3R 28302332 intergenic not near genes chr3R 28302584 intergenic not near genes chr3R_41_28300001 chr3R_28300001 RAL-819 3480 chr3R 28331493 28331530 chr3R 28331597 28331634 20 104 5.0 15.5 10.2 1.8 141 chr3R 28331493 intron larp - chr3R 28331564 intron larp - chr3R 28331634 intron larp - chr3R_20_28330001 chr3R_28330001 RAL-819 3481 chr3R 28380772 28380784 chr3R 28381030 28381043 8 258 31.5 9.0 20.2 0.4 271 chr3R 28380772 intergenic not near genes chr3R 28380908 intergenic not near genes chr3R 28381043 intergenic not near genes chr3R_8_28380001 chr3R_28380001 RAL-819 3482 chr3R 28380786 28380821 chr3R 28381023 28381068 36 247 11.0 7.5 9.2 3.5 282 chr3R 28380786 intergenic not near genes chr3R 28380927 intergenic not near genes chr3R 28381068 intergenic not near genes chr3R_36_28380001 chr3R_28380001 RAL-819 3483 chr3R 28387453 28387510 chr3R 28387586 28387642 27 132 7.0 12.5 9.8 2.5 189 chr3R 28387453 intergenic not near genes chr3R 28387548 intergenic not near genes chr3R 28387642 intergenic not near genes chr3R_27_28385001 chr3R_28385001 RAL-819 3484 chr3R 28390115 28390145 chr3R 28390188 28390247 36 84 13.0 9.0 11.0 3.0 132 chr3R 28390115 intergenic not near genes chr3R 28390181 intergenic not near genes chr3R 28390247 intergenic not near genes chr3R_36_28390001 chr3R_28390001 RAL-819 3485 chr3R 28393672 28393731 chr3R 28393797 28393851 62 124 9.5 8.5 9.0 6.2 179 chr3R 28393672 intergenic not near genes chr3R 28393762 intergenic not near genes chr3R 28393851 intergenic not near genes chr3R_62_28390001 chr3R_28390001 RAL-819 3486 chr3R 28407686 28407709 chr3R 28407797 28407820 16 109 26.5 21.0 23.8 0.6 134 chr3R 28407686 intergenic not near genes chr3R 28407753 intergenic not near genes chr3R 28407820 intergenic not near genes chr3R_16_28405001 chr3R_28405001 RAL-819 3487 chr3R 28407710 28407734 chr3R 28407790 28407845 20 106 15.5 17.0 16.2 1.2 135 chr3R 28407710 intergenic not near genes chr3R 28407778 intergenic not near genes chr3R 28407845 intergenic not near genes chr3R_20_28405001 chr3R_28405001 RAL-819 3488 chr3R 28416096 28416125 chr3R 28416237 28416245 21 136 37.0 15.5 26.2 0.8 149 chr3R 28416096 intergenic not near genes chr3R 28416170 intergenic not near genes chr3R 28416245 intergenic not near genes chr3R_21_28415001 chr3R_28415001 RAL-819 3489 chr3R 28444695 28444727 chr3R 28445051 28445083 21 347 19.0 13.5 16.2 1.2 388 chr3R 28444695 intron beat-VI + chr3R 28444889 intron beat-VI + chr3R 28445083 intron beat-VI + chr3R_21_28440001 chr3R_28440001 RAL-819 3490 chr3R 28444729 28444748 chr3R 28445050 28445104 24 351 9.0 13.0 11.0 2.0 375 chr3R 28444729 intron beat-VI + chr3R 28444916 intron beat-VI + chr3R 28445104 intron beat-VI + chr3R_24_28440001 chr3R_28440001 RAL-819 3491 chr3R 28445581 28445635 chr3R 28445695 28445744 34 110 11.5 18.0 14.8 2.2 163 chr3R 28445581 intron beat-VI + chr3R 28445662 intron beat-VI + chr3R 28445744 intron beat-VI + chr3R_34_28445001 chr3R_28445001 RAL-819 3492 chr3R 28455002 28455058 chr3R 28455291 28455347 63 286 15.0 12.5 13.8 4.3 345 chr3R 28455002 intron beat-VI + chr3R 28455174 intron beat-VI + chr3R 28455347 intron beat-VI + chr3R_63_28455001 chr3R_28455001 RAL-819 3493 chr3R 28480304 28480356 chr3R 28480410 28480462 27 106 6.5 14.5 10.5 2.3 158 chr3R 28480304 intergenic not near genes chr3R 28480383 intergenic not near genes chr3R 28480462 intergenic not near genes chr3R_27_28480001 chr3R_28480001 RAL-819 3494 chr3R 28616448 28616502 chr3R 28616567 28616621 51 118 14.5 11.0 12.8 3.7 173 chr3R 28616448 intron CG10011 - chr3R 28616534 intron CG10011 - chr3R 28616621 intron CG10011 - chr3R_51_28615001 chr3R_28615001 RAL-819 3495 chr3R 28626819 28626841 chr3R 28626944 28626961 19 121 23.5 12.5 18.0 1.0 142 chr3R 28626819 intron CG10011 - chr3R 28626890 intron CG10011 - chr3R 28626961 intron CG10011 - chr3R_19_28625001 chr3R_28625001 RAL-819 3496 chr3R 28626843 28626874 chr3R 28626943 28626957 34 103 12.5 12.5 12.5 2.5 114 chr3R 28626843 intron CG10011 - chr3R 28626900 intron CG10011 - chr3R 28626957 intron CG10011 - chr3R_34_28625001 chr3R_28625001 RAL-819 3497 chr3R 28758262 28758281 chr3R 28763904 28763917 roo 13 5642 32.0 0.5 16.2 0.8 5655 chr3R 28758262 intergenic aqrs - chr3R 28761090 intergenic not near genes chr3R 28763917 intergenic not near genes chr3R_13_28760001 chr3R_28760001 RAL-819 3498 chr3R 28758297 28758319 chr3R 28771329 28771351 Stalker4 12 13032 13.0 15.0 14.0 0.8 13054 chr3R 28758297 intergenic aqrs - chr3R 28764824 intergenic not near genes chr3R 28771351 intergenic not near genes chr3R_12_28760001 chr3R_28760001 RAL-819 3499 chr3R 28763900 28763913 chr3R 28771368 28771381 Stalker4 12 7468 0.0 26.5 13.2 0.8 7481 chr3R 28763900 intergenic not near genes chr3R 28767640 intergenic not near genes chr3R 28771381 intergenic not near genes chr3R_12_28765001 chr3R_28765001 RAL-819 3500 chr3R 28792874 28792902 chr3R 28797962 28797992 jockey 33 5108 8.0 17.0 12.5 2.4 5118 chr3R 28792874 intergenic not near genes chr3R 28795433 intergenic not near genes chr3R 28797992 intergenic not near genes chr3R_33_28795001 chr3R_28795001 RAL-819 3501 chr3R 28811547 28811602 chr3R 28811718 28811773 43 170 11.5 10.0 10.8 3.6 226 chr3R 28811547 intergenic wdn - chr3R 28811660 intergenic wdn -,CG1646 + chr3R 28811773 intergenic CG1646 +,wdn - chr3R_43_28810001 chr3R_28810001 RAL-819 3502 chr3R 28830867 28830877 chr3R 28830970 28830980 13 103 35.0 14.5 24.8 0.5 113 chr3R 28830867 intron WASp - chr3R 28830924 intron WASp - chr3R 28830980 intron WASp - chr3R_13_28830001 chr3R_28830001 RAL-819 3503 chr3R 28830879 28830922 chr3R 28830967 28831025 38 97 13.0 14.0 13.5 2.6 146 chr3R 28830879 intron WASp - chr3R 28830952 intron WASp - chr3R 28831025 intron WASp - chr3R_38_28830001 chr3R_28830001 RAL-819 3504 chr3R 21907534 21907536 chr3R 28831799 28831802 132 6924266 69.0 47.5 58.2 2.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_132_25365001 chr3R_25365001 RAL-819 3505 chr3R 28862122 28862173 chr3R 28862224 28862275 30 101 11.0 7.0 9.0 3.0 153 chr3R 28862122 intron spg + chr3R 28862198 intron spg + chr3R 28862275 intron spg + chr3R_30_28860001 chr3R_28860001 RAL-819 3506 chr3R 28950228 28950276 chr3R 28950334 28950385 19 106 6.0 5.0 5.5 2.9 157 chr3R 28950228 intron CG14521 - chr3R 28950306 intron CG14521 - chr3R 28950385 intron CG14521 - chr3R_19_28950001 chr3R_28950001 RAL-819 3507 chr3R 28988771 28988819 chr3R 28995241 28995289 50 6474 137.0 103.0 120.0 0.4 6518 chr3R 28988771 intergenic not near genes chr3R 28992030 intergenic not near genes chr3R 28995289 exon wat - chr3R_50_28990001 chr3R_28990001 RAL-819 3508 chr3R 29011939 29011995 chr3R 29012076 29012128 33 133 13.0 3.5 8.2 3.6 189 chr3R 29011939 intron wat - chr3R 29012034 intron wat - chr3R 29012128 intron wat - chr3R_33_29010001 chr3R_29010001 RAL-819 3509 chr3R 21907534 21907536 chr3R 29013339 29013339 4 7105804 69.0 58.0 63.5 0.1 7105805 chr3R 21907534 intergenic CG6678 + chr3R 25460436 intron Fur1 - chr3R 29013339 intron wat - chr3R_4_25460001 chr3R_25460001 RAL-819 3510 chr3R 29032722 29032742 chr3R 29032824 29032839 19 100 20.0 10.0 15.0 1.2 117 chr3R 29032722 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032780 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032839 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_19_29030001 chr3R_29030001 RAL-819 3511 chr3R 29032744 29032775 chr3R 29032821 29032861 26 91 6.0 10.0 8.0 2.9 117 chr3R 29032744 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032802 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032861 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_26_29030001 chr3R_29030001 RAL-819 3512 chr3R 29070029 29070080 chr3R 29070135 29070186 45 105 8.5 19.0 13.8 3.0 157 chr3R 29070029 intron CG11873 + chr3R 29070108 intron CG11873 + chr3R 29070186 intron CG11873 + chr3R_45_29070001 chr3R_29070001 RAL-819 3513 chr3R 29079383 29079408 chr3R 29080780 29080805 NOF 22 1397 6.0 17.5 11.8 1.7 1422 chr3R 29079383 intron CG11873 + chr3R 29080094 intron CG11873 + chr3R 29080805 intron CG11873 + chr3R_22_29080001 chr3R_29080001 RAL-819 3514 chr3R 29180033 29180092 chr3R 29180150 29180176 54 104 14.0 13.0 13.5 3.7 143 chr3R 29180033 intron CG14509 - chr3R 29180104 intron CG14509 - chr3R 29180176 intron CG14509 - chr3R_54_29180001 chr3R_29180001 RAL-819 3515 chr3R 29183092 29183140 chr3R 29183196 29183244 40 101 17.0 17.5 17.2 2.2 152 chr3R 29183092 intron CG14509 - chr3R 29183168 intron CG14509 - chr3R 29183244 intron CG14509 - chr3R_40_29180001 chr3R_29180001 RAL-819 3516 chr3R 29203825 29203847 chr3R 29203927 29203951 14 104 26.5 0.0 13.2 1.0 126 chr3R 29203825 5` UTR CG14508 - chr3R 29203888 intron CG14508 - chr3R 29203951 intron CG14508 - chr3R_14_29200001 chr3R_29200001 RAL-819 3517 chr3R 29213034 29213093 chr3R 29213142 29213201 64 107 14.5 9.0 11.8 5.0 167 chr3R 29213034 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213201 intergenic not near genes chr3R_64_29210001 chr3R_29210001 RAL-819 3518 chr3R 29237231 29237238 chr3R 29239277 29239284 4 2046 99.5 23.0 61.2 0.1 2053 chr3R 29237231 exon CG11951 - chr3R 29238258 intron CG11951 - chr3R 29239284 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-819 3519 chr3R 29237239 29237536 chr3R 29239273 29239454 42 2012 68.5 20.5 44.5 0.9 2215 chr3R 29237239 exon CG11951 - chr3R 29238346 intron CG11951 - chr3R 29239454 exon CG31427 - chr3R_42_29235001 chr3R_29235001 RAL-819 3520 chr3R 29239220 29239243 chr3R 29245534 29245559 13 6315 16.0 73.0 44.5 0.3 6339 chr3R 29239220 exon CG31427 - chr3R 29242390 exon CG31445 - chr3R 29245559 exon SP1029 - chr3R_13_29240001 chr3R_29240001 RAL-819 3521 chr3R 29237523 29237534 chr3R 29239406 29239429 20 1884 68.5 38.0 53.2 0.4 1906 chr3R 29237523 exon CG11951 - chr3R 29238476 intron CG11951 - chr3R 29239429 exon CG31427 - chr3R_20_29235001 chr3R_29235001 RAL-819 3522 chr3R 29240467 29240505 chr3R 29240576 29240613 27 107 5.5 15.0 10.2 2.4 146 chr3R 29240467 intergenic CG31427 -,CG31445 - chr3R 29240540 intergenic CG31445 -,CG31427 - chr3R 29240613 3` UTR CG31445 - chr3R_27_29240001 chr3R_29240001 RAL-819 3523 chr3R 29256239 29256300 chr3R 29256344 29256395 47 102 11.0 12.0 11.5 3.8 156 chr3R 29256239 intergenic CG45544 +,stg - chr3R 29256317 intergenic CG45544 + chr3R 29256395 intergenic CG45544 + chr3R_47_29255001 chr3R_29255001 RAL-819 3524 chr3R 29282783 29282820 chr3R 29282894 29282931 31 108 11.5 19.5 15.5 1.9 148 chr3R 29282783 intergenic not near genes chr3R 29282857 intergenic not near genes chr3R 29282931 intergenic not near genes chr3R_31_29280001 chr3R_29280001 RAL-819 3525 chr3R 29319809 29319849 chr3R 29320153 29320193 jockey 37 343 12.5 18.5 15.5 2.2 384 chr3R 29319809 intergenic Cnx99A - chr3R 29320001 intergenic Cnx99A - chr3R 29320193 intergenic not near genes chr3R_37_29320001 chr3R_29320001 RAL-819 3526 chr3R 29332259 29332309 chr3R 29332361 29332411 38 101 8.5 9.0 8.8 3.9 152 chr3R 29332259 intergenic not near genes chr3R 29332335 intergenic not near genes chr3R 29332411 intergenic not near genes chr3R_38_29330001 chr3R_29330001 RAL-819 3527 chr3R 29343378 29343396 chr3R 29343448 29343503 24 99 10.0 8.5 9.2 2.4 125 chr3R 29343378 intergenic not near genes chr3R 29343440 intergenic not near genes chr3R 29343503 intergenic not near genes chr3R_24_29340001 chr3R_29340001 RAL-819 3528 chr3R 29355932 29355989 chr3R 29356036 29356089 26 104 8.5 7.0 7.8 3.0 157 chr3R 29355932 intergenic CR45547 - chr3R 29356010 intergenic CR45547 - chr3R 29356089 intergenic CR45547 - chr3R_26_29355001 chr3R_29355001 RAL-819 3529 chr3R 29384161 29384173 chr3R 29384263 29384275 10 101 31.5 11.0 21.2 0.5 114 chr3R 29384161 intron Ptp99A + chr3R 29384218 intron Ptp99A + chr3R 29384275 intron Ptp99A + chr3R_10_29380001 chr3R_29380001 RAL-819 3530 chr3R 29384174 29384191 chr3R 29384261 29384293 16 98 22.0 9.5 15.8 1.0 119 chr3R 29384174 intron Ptp99A + chr3R 29384234 intron Ptp99A + chr3R 29384293 intron Ptp99A + chr3R_16_29380001 chr3R_29380001 RAL-819 3531 chr3R 29402956 29403006 chr3R 29403076 29403126 34 119 8.5 13.0 10.8 2.9 170 chr3R 29402956 intron Ptp99A + chr3R 29403041 intron Ptp99A + chr3R 29403126 intron Ptp99A + chr3R_34_29400001 chr3R_29400001 RAL-819 3532 chr3R 29406592 29406651 chr3R 29407903 29407917 jockey 41 1303 13.0 18.5 15.8 2.4 1325 chr3R 29406592 intron Ptp99A + chr3R 29407254 intron Ptp99A + chr3R 29407917 intron Ptp99A + chr3R_41_29405001 chr3R_29405001 RAL-819 3533 chr3R 29409646 29409704 chr3R 29410636 29410689 38 980 10.5 19.5 15.0 2.4 1043 chr3R 29409646 intron Ptp99A + chr3R 29410168 intron Ptp99A + chr3R 29410689 intron Ptp99A + chr3R_38_29410001 chr3R_29410001 RAL-819 3534 chr3R 29420080 29420088 chr3R 29420194 29420201 7 114 6.5 10.5 8.5 0.7 121 chr3R 29420080 intron Ptp99A + chr3R 29420140 intron Ptp99A + chr3R 29420201 intron Ptp99A + chr3R_7_29420001 chr3R_29420001 RAL-819 3535 chr3R 29439695 29439748 chr3R 29439809 29439862 56 111 11.0 12.5 11.8 4.4 167 chr3R 29439695 intron Ptp99A + chr3R 29439778 intron Ptp99A + chr3R 29439862 intron Ptp99A + chr3R_56_29435001 chr3R_29435001 RAL-819 3536 chr3R 29471982 29472039 chr3R 29472100 29472156 49 115 9.0 11.0 10.0 4.5 174 chr3R 29471982 intron Ptp99A + chr3R 29472069 intron Ptp99A + chr3R 29472156 intron Ptp99A + chr3R_49_29470001 chr3R_29470001 RAL-819 3537 chr3R 29539405 29539445 chr3R 29539506 29539516 35 99 12.0 0.0 6.0 5.0 111 chr3R 29539405 intergenic not near genes chr3R 29539460 intergenic not near genes chr3R 29539516 intergenic not near genes chr3R_35_29535001 chr3R_29535001 RAL-819 3538 chr3R 29563976 29563993 chr3R 29564077 29564092 12 101 0.0 22.0 11.0 1.0 116 chr3R 29563976 intron Dr + chr3R 29564034 intron Dr + chr3R 29564092 intron Dr + chr3R_12_29560001 chr3R_29560001 RAL-819 3539 chr3R 29565749 29565763 chr3R 29565852 29565866 10 102 21.5 12.0 16.8 0.6 117 chr3R 29565749 intergenic not near genes chr3R 29565808 intergenic not near genes chr3R 29565866 intergenic not near genes chr3R_10_29565001 chr3R_29565001 RAL-819 3540 chr3R 29590349 29590402 chr3R 29590467 29590520 41 116 9.5 12.0 10.8 3.5 171 chr3R 29590349 exon CG31041 - chr3R 29590434 intron CG31041 - chr3R 29590520 exon CG31041 - chr3R_41_29590001 chr3R_29590001 RAL-819 3541 chr3R 29621245 29621264 chr3R 29621347 29621366 15 101 21.5 7.5 14.5 1.0 121 chr3R 29621245 intergenic CG1907 + chr3R 29621306 intergenic not near genes chr3R 29621366 intergenic not near genes chr3R_15_29620001 chr3R_29620001 RAL-819 3542 chr3R 29648985 29649013 chr3R 29649100 29649128 14 114 14.5 10.0 12.2 1.1 143 chr3R 29648985 intron Dop1R2 - chr3R 29649056 intron Dop1R2 - chr3R 29649128 intron Dop1R2 - chr3R_14_29645001 chr3R_29645001 RAL-819 3543 chr3R 29655625 29655674 chr3R 29655729 29655778 40 101 10.5 11.5 11.0 3.3 153 chr3R 29655625 intron Dop1R2 - chr3R 29655702 intron Dop1R2 - chr3R 29655778 intron Dop1R2 - chr3R_40_29655001 chr3R_29655001 RAL-819 3544 chr3R 29656792 29656850 chr3R 29657048 29657106 65 252 12.5 11.0 11.8 5.1 314 chr3R 29656792 intron Dop1R2 - chr3R 29656949 intron Dop1R2 - chr3R 29657106 intron Dop1R2 - chr3R_65_29655001 chr3R_29655001 RAL-819 3545 chr3R 29692266 29692270 chr3R 29692369 29692372 4 103 43.0 16.5 29.8 0.1 106 chr3R 29692266 intergenic dmrt99B + chr3R 29692319 intergenic dmrt99B + chr3R 29692372 intergenic dmrt99B + chr3R_4_29690001 chr3R_29690001 RAL-819 3546 chr3R 29692271 29692292 chr3R 29692364 29692394 23 95 32.0 15.5 23.8 0.9 123 chr3R 29692271 intergenic dmrt99B + chr3R 29692332 intergenic dmrt99B + chr3R 29692394 intergenic dmrt99B + chr3R_23_29690001 chr3R_29690001 RAL-819 3547 chr3R 29692294 29692318 chr3R 29692360 29692383 25 77 15.5 15.5 15.5 1.5 89 chr3R 29692294 intergenic dmrt99B + chr3R 29692338 intergenic dmrt99B + chr3R 29692383 intergenic dmrt99B + chr3R_25_29690001 chr3R_29690001 RAL-819 3548 chr3R 29738244 29738295 chr3R 29739736 29739787 hobo 29 1489 7.0 15.0 11.0 2.4 1543 chr3R 29738244 intergenic CG1969 +,CG7598 + chr3R 29739016 intron CG1969 + chr3R 29739787 5` UTR CG1969 + chr3R_29_29735001 chr3R_29735001 RAL-819 3549 chr3R 29881996 29882053 chr3R 29891178 29891201 roo 48 9179 13.5 15.0 14.2 3.2 9205 chr3R 29881996 intron CG31038 + chr3R 29886598 intron CG31038 + chr3R 29891201 intron CG31038 + chr3R_48_29885001 chr3R_29885001 RAL-819 3550 chr3R 29923646 29923646 chr3R 29925226 29925278 27 1584 70.5 96.5 83.5 0.3 1632 chr3R 29923646 intergenic Jon99Cii -,Jon99Ciii + chr3R 29924462 exon Jon99Cii - chr3R 29925278 3` UTR Jon99Ci - chr3R_27_29920001 chr3R_29920001 RAL-819 3551 chr3R 29950551 29950590 chr3R 29950653 29950687 23 97 17.0 18.5 17.8 1.2 136 chr3R 29950551 intergenic TkR99D - chr3R 29950619 intergenic TkR99D - chr3R 29950687 intergenic TkR99D - chr3R_23_29950001 chr3R_29950001 RAL-819 3552 chr3R 29950592 29950598 chr3R 29950651 29950700 5 86 14.5 16.5 15.5 0.3 108 chr3R 29950592 intergenic TkR99D - chr3R 29950646 intergenic TkR99D - chr3R 29950700 intergenic TkR99D - chr3R_5_29950001 chr3R_29950001 RAL-819 3553 chr3R 29966035 29966061 chr3R 29966140 29966147 12 96 15.0 23.5 19.2 0.6 112 chr3R 29966035 intron TkR99D - chr3R 29966091 intron TkR99D - chr3R 29966147 intron TkR99D - chr3R_12_29965001 chr3R_29965001 RAL-819 3554 chr3R 29966062 29966074 chr3R 29966139 29966153 22 95 15.0 22.5 18.8 1.1 91 chr3R 29966062 intron TkR99D - chr3R 29966108 intron TkR99D - chr3R 29966153 intron TkR99D - chr3R_22_29965001 chr3R_29965001 RAL-819 3555 chr3R 30013357 30013361 chr3R 30013480 30013484 4 123 32.5 12.0 22.2 0.2 127 chr3R 30013357 intron CG7920 - chr3R 30013420 intron CG7920 - chr3R 30013484 intron CG7920 - chr3R_4_30010001 chr3R_30010001 RAL-819 3556 chr3R 30013362 30013405 chr3R 30013479 30013528 46 119 13.0 12.0 12.5 3.4 166 chr3R 30013362 intron CG7920 - chr3R 30013445 intron CG7920 - chr3R 30013528 intron CG7920 - chr3R_46_30010001 chr3R_30010001 RAL-819 3557 chr3R 30026943 30026989 chr3R 30027044 30027092 13 102 0.0 14.0 7.0 1.6 149 chr3R 30026943 intron Axn + chr3R 30027018 intron Axn + chr3R 30027092 intron Axn + chr3R_13_30025001 chr3R_30025001 RAL-819 3558 chr3R 30084830 30084883 chr3R 30086322 30086328 hobo 43 1489 12.0 12.0 12.0 3.3 1498 chr3R 30084830 intron sima + chr3R 30085579 intron sima + chr3R 30086328 intron sima + chr3R_43_30085001 chr3R_30085001 RAL-819 3559 chr3R 30149188 30149236 chr3R 30149300 30149348 41 109 11.5 13.5 12.5 3.0 160 chr3R 30149188 5` UTR AdoR - chr3R 30149268 5` UTR AdoR - chr3R 30149348 5` UTR AdoR - chr3R_41_30145001 chr3R_30145001 RAL-819 3560 chr3R 30163325 30163328 chr3R 30163434 30163436 5 109 31.5 0.0 15.8 0.3 111 chr3R 30163325 intergenic not near genes chr3R 30163380 intergenic not near genes chr3R 30163436 intergenic not near genes chr3R_5_30160001 chr3R_30160001 RAL-819 3561 chr3R 30163329 30163362 chr3R 30163433 30163471 24 108 19.0 0.0 9.5 2.3 142 chr3R 30163329 intergenic not near genes chr3R 30163400 intergenic not near genes chr3R 30163471 intergenic not near genes chr3R_24_30160001 chr3R_30160001 RAL-819 3562 chr3R 30175674 30175728 chr3R 30175782 30175839 39 110 10.0 10.5 10.2 3.5 165 chr3R 30175674 intergenic CG1983 - chr3R 30175756 intergenic CG1983 - chr3R 30175839 3` UTR CG1983 - chr3R_39_30175001 chr3R_30175001 RAL-819 3563 chr3R 30203365 30203388 chr3R 30203469 30203492 15 103 9.5 18.0 13.8 1.0 127 chr3R 30203365 intergenic CG9743 - chr3R 30203428 intergenic CG9743 - chr3R 30203492 intergenic CG9743 - chr3R_15_30200001 chr3R_30200001 RAL-819 3564 chr3R 30210592 30210674 chr3R 30210730 30210779 17 111 0.0 15.0 7.5 2.0 187 chr3R 30210592 intergenic Anp +,CecA1 + chr3R 30210686 intergenic CecA1 +,Anp + chr3R 30210779 intergenic CecA1 +,Anp + chr3R_17_30210001 chr3R_30210001 RAL-819 3565 chr3R 30224625 30224673 chr3R 30224728 30224776 53 102 9.5 14.0 11.8 4.1 151 chr3R 30224625 intergenic not near genes chr3R 30224700 intergenic not near genes chr3R 30224776 intergenic not near genes chr3R_53_30220001 chr3R_30220001 RAL-819 3566 chr3R 30238735 30238780 chr3R 30239924 30239957 1360 25 1189 10.5 0.0 5.2 4.0 1222 chr3R 30238735 intergenic not near genes chr3R 30239346 intergenic not near genes chr3R 30239957 intergenic not near genes chr3R_25_30235001 chr3R_30235001 RAL-819 3567 chr3R 30246305 30246336 chr3R 30246409 30246440 26 103 0.0 20.0 10.0 2.4 135 chr3R 30246305 intron CG9733 - chr3R 30246372 intron CG9733 - chr3R 30246440 intron CG9733 - chr3R_26_30245001 chr3R_30245001 RAL-819 3568 chr3R 30268220 30268448 chr3R 30268324 30268524 75 103 15.0 9.5 12.2 5.7 304 chr3R 30268220 intergenic not near genes chr3R 30268372 intergenic not near genes chr3R 30268524 intergenic not near genes chr3R_75_30265001 chr3R_30265001 RAL-819 3569 chr3R 30273576 30273598 chr3R 30273689 30273716 16 117 21.0 12.5 16.8 0.9 140 chr3R 30273576 intergenic not near genes chr3R 30273646 intergenic not near genes chr3R 30273716 intergenic not near genes chr3R_16_30270001 chr3R_30270001 RAL-819 3570 chr3R 30273600 30273625 chr3R 30273684 30273736 19 116 9.5 10.5 10.0 1.7 136 chr3R 30273600 intergenic not near genes chr3R 30273668 intergenic not near genes chr3R 30273736 intergenic not near genes chr3R_19_30270001 chr3R_30270001 RAL-819 3571 chr3R 7773344 7773344 chr3R 30278264 30278264 4 22504920 41.0 58.0 49.5 0.1 22504920 chr3R 7773344 intergenic not near genes chr3R 19025804 exon CG14285 + chr3R 30278264 5` UTR hdc + chr3R_4_19025001 chr3R_19025001 RAL-819 3572 chr3R 30287750 30287768 chr3R 30287858 30287861 6 102 23.5 12.0 17.8 0.3 111 chr3R 30287750 intron hdc + chr3R 30287806 intron hdc + chr3R 30287861 intron hdc + chr3R_6_30285001 chr3R_30285001 RAL-819 3573 chr3R 30307106 30307151 chr3R 30307201 30307257 45 103 10.0 12.5 11.2 3.7 151 chr3R 30307106 intron hdc + chr3R 30307182 intron hdc + chr3R 30307257 intron hdc + chr3R_45_30305001 chr3R_30305001 RAL-819 3574 chr3R 30317302 30317358 chr3R 30324918 30324945 roo 26 7615 4.5 15.0 9.8 2.4 7643 chr3R 30317302 intron hdc + chr3R 30321124 intron hdc + chr3R 30324945 intron hdc + chr3R_26_30320001 chr3R_30320001 RAL-819 3575 chr3R 30330479 30330488 chr3R 30330571 30330593 7 99 22.0 10.0 16.0 0.4 114 chr3R 30330479 intron hdc + chr3R 30330536 intron hdc + chr3R 30330593 intron hdc + chr3R_7_30330001 chr3R_30330001 RAL-819 3576 chr3R 30330491 30330525 chr3R 30330570 30330599 23 89 7.5 9.0 8.2 2.5 108 chr3R 30330491 intron hdc + chr3R 30330545 intron hdc + chr3R 30330599 intron hdc + chr3R_23_30330001 chr3R_30330001 RAL-819 3577 chr3R 30332427 30332480 chr3R 30332531 30332575 21 97 7.0 5.0 6.0 3.0 148 chr3R 30332427 intron hdc + chr3R 30332501 intron hdc + chr3R 30332575 intron hdc + chr3R_21_30330001 chr3R_30330001 RAL-819 3578 chr3R 30375522 30375572 chr3R 30383170 30383220 412 22 7645 9.5 12.0 10.8 1.9 7698 chr3R 30375522 intergenic not near genes chr3R 30379371 intergenic not near genes chr3R 30383220 intergenic not near genes chr3R_22_30375001 chr3R_30375001 RAL-819 3579 chr3R 30396194 30396241 chr3R 30404485 30404532 roo 38 8290 15.5 15.0 15.2 2.3 8338 chr3R 30396194 intergenic not near genes chr3R 30400363 intergenic not near genes chr3R 30404532 5` UTR CR45570 + chr3R_38_30400001 chr3R_30400001 RAL-819 3580 chr3R 30413036 30413092 chr3R 30413138 30413180 36 100 14.0 12.0 13.0 2.6 144 chr3R 30413036 intergenic not near genes chr3R 30413108 intergenic not near genes chr3R 30413180 intergenic not near genes chr3R_36_30410001 chr3R_30410001 RAL-819 3581 chr3R 30461466 30461522 chr3R 30461608 30461664 43 141 14.0 10.0 12.0 3.3 198 chr3R 30461466 intron CDase + chr3R 30461565 intron CDase + chr3R 30461664 intron CDase + chr3R_43_30460001 chr3R_30460001 RAL-819 3582 chr3R 30480448 30480486 chr3R 30482941 30482979 jockey 26 2490 34.5 13.0 23.8 1.0 2531 chr3R 30480448 intron PH4alphaEFB + chr3R 30481714 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_26_30480001 chr3R_30480001 RAL-819 3583 chr3R 30480487 30480509 chr3R 30482940 30483002 jockey 19 2488 17.0 12.5 14.8 1.2 2515 chr3R 30480487 intron PH4alphaEFB + chr3R 30481744 intron PH4alphaEFB + chr3R 30483002 intron PH4alphaEFB + chr3R_19_30480001 chr3R_30480001 RAL-819 3584 chr3R 30488099 30488115 chr3R 30488203 30488219 10 104 10.0 0.0 5.0 1.7 120 chr3R 30488099 intergenic Jon99Fii - chr3R 30488159 intergenic Jon99Fii - chr3R 30488219 intergenic Jon99Fii - chr3R_10_30485001 chr3R_30485001 RAL-819 3585 chr3R 30498401 30498404 chr3R 30498626 30498629 4 225 0.0 27.0 13.5 0.3 228 chr3R 30498401 intron PH4alphaNE1 - chr3R 30498515 intron PH4alphaNE1 - chr3R 30498629 intron PH4alphaNE1 - chr3R_4_30495001 chr3R_30495001 RAL-819 3586 chr3R 30498405 30498435 chr3R 30498624 30498660 25 225 0.0 26.0 13.0 1.8 255 chr3R 30498405 intron PH4alphaNE1 - chr3R 30498532 intron PH4alphaNE1 - chr3R 30498660 intron PH4alphaNE1 - chr3R_25_30495001 chr3R_30495001 RAL-819 3587 chr3R 30548297 30548329 chr3R 30548399 30548432 17 102 13.0 17.5 15.2 1.0 135 chr3R 30548297 intron tmod + chr3R 30548364 intron tmod + chr3R 30548432 intron tmod + chr3R_17_30545001 chr3R_30545001 RAL-819 3588 chr3R 30600769 30600818 chr3R 30600890 30600939 41 119 13.5 18.5 16.0 2.4 170 chr3R 30600769 intron CG2246 - chr3R 30600854 intron CG2246 - chr3R 30600939 intron CG2246 - chr3R_41_30600001 chr3R_30600001 RAL-819 3589 chr3R 30617177 30617187 chr3R 30617259 30617289 14 93 20.5 19.5 20.0 0.7 112 chr3R 30617177 intergenic not near genes chr3R 30617233 intergenic not near genes chr3R 30617289 intergenic not near genes chr3R_14_30615001 chr3R_30615001 RAL-819 3590 chr3R 30617190 30617204 chr3R 30617252 30617296 11 91 17.0 18.0 17.5 0.6 106 chr3R 30617190 intergenic not near genes chr3R 30617243 intergenic not near genes chr3R 30617296 intergenic not near genes chr3R_11_30615001 chr3R_30615001 RAL-819 3591 chr3R 30627583 30627587 chr3R 30627688 30627692 4 105 45.5 18.5 32.0 0.1 109 chr3R 30627583 3` UTR CG2267 - chr3R 30627638 exon CG2267 - chr3R 30627692 exon CG2267 - chr3R_4_30625001 chr3R_30625001 RAL-819 3592 chr3R 30627588 30627633 chr3R 30627687 30627738 54 99 16.0 18.0 17.0 3.0 150 chr3R 30627588 3` UTR CG2267 - chr3R 30627663 exon CG2267 - chr3R 30627738 exon CG2267 - chr3R_54_30625001 chr3R_30625001 RAL-819 3593 chr3R 30634970 30635014 chr3R 30635080 30635124 37 109 13.0 9.0 11.0 3.1 154 chr3R 30634970 intergenic not near genes chr3R 30635047 intergenic not near genes chr3R 30635124 intergenic not near genes chr3R_37_30635001 chr3R_30635001 RAL-819 3594 chr3R 30641673 30641719 chr3R 30641776 30641783 48 96 16.5 9.0 12.8 3.5 110 chr3R 30641673 intergenic not near genes chr3R 30641728 intergenic not near genes chr3R 30641783 intergenic not near genes chr3R_48_30640001 chr3R_30640001 RAL-819 3595 chr3R 30679492 30679550 chr3R 30686986 30687044 blood 33 7492 12.0 10.5 11.2 2.7 7552 chr3R 30679492 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687044 intergenic not near genes chr3R_33_30680001 chr3R_30680001 RAL-819 3596 chr3R 30703549 30703576 chr3R 30703656 30703664 10 102 30.0 0.0 15.0 0.6 115 chr3R 30703549 intergenic not near genes chr3R 30703606 intergenic not near genes chr3R 30703664 intergenic not near genes chr3R_10_30700001 chr3R_30700001 RAL-819 3597 chr3R 30718624 30718681 chr3R 30718731 30718768 47 104 8.0 13.5 10.8 4.0 144 chr3R 30718624 intergenic not near genes chr3R 30718696 intergenic not near genes chr3R 30718768 intergenic not near genes chr3R_47_30715001 chr3R_30715001 RAL-819 3598 chr3R 30723058 30723086 chr3R 30723161 30723166 13 99 22.5 16.0 19.2 0.6 108 chr3R 30723058 intergenic not near genes chr3R 30723112 intergenic not near genes chr3R 30723166 intergenic not near genes chr3R_13_30720001 chr3R_30720001 RAL-819 3599 chr3R 30723089 30723112 chr3R 30723157 30723204 11 95 11.5 14.5 13.0 0.8 115 chr3R 30723089 intergenic not near genes chr3R 30723146 intergenic not near genes chr3R 30723204 intergenic not near genes chr3R_11_30720001 chr3R_30720001 RAL-819 3600 chr3R 30747523 30747578 chr3R 30747621 30747652 25 96 6.0 11.5 8.8 2.6 129 chr3R 30747523 intergenic CR43238 - chr3R 30747588 intergenic CR43238 - chr3R 30747652 intergenic CR43238 - chr3R_25_30745001 chr3R_30745001 RAL-819 3601 chr3R 30818789 30818833 chr3R 30820379 30820419 1360 44 1588 7.5 11.5 9.5 4.2 1630 chr3R 30818789 intron cindr + chr3R 30819604 intron cindr + chr3R 30820419 intron cindr + chr3R_44_30815001 chr3R_30815001 RAL-819 3602 chr3R 30859382 30859427 chr3R 30859485 30859530 41 102 13.5 15.0 14.2 2.7 148 chr3R 30859382 intergenic not near genes chr3R 30859456 intergenic not near genes chr3R 30859530 intergenic not near genes chr3R_41_30855001 chr3R_30855001 RAL-819 3603 chr3R 30952603 30952658 chr3R 30954015 30954064 46 1407 7.0 15.5 11.2 3.8 1461 chr3R 30952603 intergenic not near genes chr3R 30953334 intergenic not near genes chr3R 30954064 intergenic not near genes chr3R_46_30950001 chr3R_30950001 RAL-819 3604 chr3R 30973108 30973110 chr3R 30973293 30973296 6 186 19.0 8.5 13.8 0.4 188 chr3R 30973108 intron 5-HT7 - chr3R 30973202 intron 5-HT7 - chr3R 30973296 intron 5-HT7 - chr3R_6_30970001 chr3R_30970001 RAL-819 3605 chr3R 30973111 30973166 chr3R 30973292 30973311 42 184 5.5 8.5 7.0 5.2 200 chr3R 30973111 intron 5-HT7 - chr3R 30973211 intron 5-HT7 - chr3R 30973311 intron 5-HT7 - chr3R_42_30970001 chr3R_30970001 RAL-819 3606 chr3R 30994372 30994426 chr3R 30994500 30994568 22 127 15.5 0.0 7.8 2.5 196 chr3R 30994372 intron 5-HT7 - chr3R 30994470 intron 5-HT7 - chr3R 30994568 intron 5-HT7 - chr3R_22_30990001 chr3R_30990001 RAL-819 3607 chr3R 31059772 31059828 chr3R 31059953 31060008 41 176 9.0 10.5 9.8 3.8 236 chr3R 31059772 intron dco - chr3R 31059890 intron dco - chr3R 31060008 intron dco - chr3R_41_31055001 chr3R_31055001 RAL-819 3608 chr3R 31069619 31069663 chr3R 31069739 31069783 40 117 16.5 13.0 14.8 2.5 164 chr3R 31069619 intron Sox100B + chr3R 31069701 intron Sox100B + chr3R 31069783 intron Sox100B + chr3R_40_31065001 chr3R_31065001 RAL-819 3609 chr3R 31069664 31069677 chr3R 31069738 31069797 13 115 9.0 12.0 10.5 1.1 133 chr3R 31069664 intron Sox100B + chr3R 31069730 intron Sox100B + chr3R 31069797 intron Sox100B + chr3R_13_31065001 chr3R_31065001 RAL-819 3610 chr3R 31074207 31074258 chr3R 31081830 31081881 springer 39 7620 24.5 13.5 19.0 1.9 7674 chr3R 31074207 intron Sox100B + chr3R 31078044 intron Sox100B + chr3R 31081881 intron Sox100B + chr3R_39_31075001 chr3R_31075001 RAL-819 3611 chr3R 31137130 31137184 chr3R 31137235 31137288 51 101 8.5 13.0 10.8 4.3 158 chr3R 31137130 intron Gycbeta100B + chr3R 31137209 intron Gycbeta100B + chr3R 31137288 intron Gycbeta100B + chr3R_51_31135001 chr3R_31135001 RAL-819 3612 chr3R 31251525 31251566 chr3R 31251631 31251677 16 110 9.5 11.0 10.2 1.4 152 chr3R 31251525 intron qless - chr3R 31251601 intron qless - chr3R 31251677 intron qless - chr3R_16_31250001 chr3R_31250001 RAL-819 3613 chr3R 31270874 31270882 chr3R 31270981 31270989 5 107 33.5 0.0 16.8 0.3 115 chr3R 31270874 intergenic not near genes chr3R 31270932 intergenic not near genes chr3R 31270989 intergenic not near genes chr3R_5_31270001 chr3R_31270001 RAL-819 3614 chr3R 31279347 31279395 chr3R 31285563 31285611 diver 40 6213 10.5 10.5 10.5 3.5 6264 chr3R 31279347 intergenic not near genes chr3R 31282479 intergenic not near genes chr3R 31285611 intergenic not near genes chr3R_40_31280001 chr3R_31280001 RAL-819 3615 chr3R 31295333 31295379 chr3R 31295444 31295480 52 106 14.0 7.0 10.5 4.5 147 chr3R 31295333 intergenic not near genes chr3R 31295406 intergenic not near genes chr3R 31295480 intergenic not near genes chr3R_52_31295001 chr3R_31295001 RAL-819 3616 chr3R 31412682 31412740 chr3R 31412799 31412858 49 114 5.0 7.0 6.0 7.0 176 chr3R 31412682 intron Gprk2 + chr3R 31412770 intron Gprk2 + chr3R 31412858 intron Gprk2 + chr3R_49_31410001 chr3R_31410001 RAL-819 3617 chr3R 31413068 31413110 chr3R 31418293 31418308 copia 25 5222 12.0 2.5 7.2 3.0 5240 chr3R 31413068 intron Gprk2 + chr3R 31415688 intron Gprk2 + chr3R 31418308 intron Gprk2 + chr3R_25_31415001 chr3R_31415001 RAL-819 3618 chr3R 31413112 31413123 chr3R 31418288 31418307 copia 12 5194 7.5 2.5 5.0 2.0 5195 chr3R 31413112 intron Gprk2 + chr3R 31415710 intron Gprk2 + chr3R 31418307 intron Gprk2 + chr3R_12_31415001 chr3R_31415001 RAL-819 3619 chr3R 31424977 31425025 chr3R 31425089 31425100 12 108 12.5 13.5 13.0 0.9 123 chr3R 31424977 intron Gprk2 + chr3R 31425038 intron Gprk2 + chr3R 31425100 intron Gprk2 + chr3R_12_31425001 chr3R_31425001 RAL-819 3620 chr3R 31426854 31426908 chr3R 31426971 31427025 34 117 10.0 7.5 8.8 3.5 171 chr3R 31426854 intron Gprk2 + chr3R 31426940 intron Gprk2 + chr3R 31427025 intron Gprk2 + chr3R_34_31425001 chr3R_31425001 RAL-819 3621 chr3R 31435336 31435389 chr3R 31435513 31435566 51 175 9.0 14.5 11.8 4.0 230 chr3R 31435336 intron Gprk2 + chr3R 31435451 intron Gprk2 + chr3R 31435566 intron Gprk2 + chr3R_51_31435001 chr3R_31435001 RAL-819 3622 chr3R 31442246 31442297 chr3R 31442356 31442407 60 107 8.5 11.0 9.8 5.6 161 chr3R 31442246 intron Gprk2 + chr3R 31442326 intron Gprk2 + chr3R 31442407 intron Gprk2 + chr3R_60_31440001 chr3R_31440001 RAL-819 3623 chr3R 31447339 31447399 chr3R 31447478 31447533 54 136 8.5 6.0 7.2 6.6 194 chr3R 31447339 intron Gprk2 + chr3R 31447436 intron Gprk2 + chr3R 31447533 intron Gprk2 + chr3R_54_31445001 chr3R_31445001 RAL-819 3624 chr3R 31477349 31477359 chr3R 31477542 31477552 4 193 20.5 15.5 18.0 0.2 203 chr3R 31477349 intergenic not near genes chr3R 31477450 intergenic not near genes chr3R 31477552 intergenic not near genes chr3R_4_31475001 chr3R_31475001 RAL-819 3625 chr3R 31477363 31477371 chr3R 31477541 31477564 13 188 15.5 15.5 15.5 0.8 201 chr3R 31477363 intergenic not near genes chr3R 31477464 intergenic not near genes chr3R 31477564 intergenic not near genes chr3R_13_31475001 chr3R_31475001 RAL-819 3626 chr3R 31477377 31477388 chr3R 31477539 31477581 14 189 8.0 14.5 11.2 1.1 204 chr3R 31477377 intergenic not near genes chr3R 31477479 intergenic not near genes chr3R 31477581 intergenic not near genes chr3R_14_31475001 chr3R_31475001 RAL-819 3627 chr3R 31498410 31498423 chr3R 31498527 31498533 11 116 22.5 25.5 24.0 0.4 123 chr3R 31498410 intergenic not near genes chr3R 31498472 intergenic not near genes chr3R 31498533 intergenic not near genes chr3R_11_31495001 chr3R_31495001 RAL-819 3628 chr3R 31548875 31548893 chr3R 31548993 31549011 7 116 29.5 47.5 38.5 0.2 136 chr3R 31548875 intron nyo + chr3R 31548943 intron nyo + chr3R 31549011 intron nyo + chr3R_7_31545001 chr3R_31545001 RAL-819 3629 chr3R 31691508 31691513 chr3R 31696299 31696304 Doc 7 4791 34.5 17.0 25.8 0.3 4796 chr3R 31691508 intergenic not near genes chr3R 31693906 intergenic not near genes chr3R 31696304 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-819 3630 chr3R 31691515 31691561 chr3R 31696297 31696347 Doc 41 4786 15.0 16.5 15.8 2.4 4832 chr3R 31691515 intergenic not near genes chr3R 31693931 intergenic not near genes chr3R 31696347 intergenic not near genes chr3R_41_31690001 chr3R_31690001 RAL-819 3631 chr3R 31858150 31858202 chr3R 31858275 31858330 11 125 0.0 8.0 4.0 2.2 180 chr3R 31858150 intron heph - chr3R 31858240 intron heph - chr3R 31858330 intron heph - chr3R_11_31855001 chr3R_31855001 RAL-819 3632 chr3R 31869145 31869201 chr3R 31869250 31869294 43 103 13.0 16.0 14.5 2.8 149 chr3R 31869145 intron heph - chr3R 31869220 intron heph - chr3R 31869294 intron heph - chr3R_43_31865001 chr3R_31865001 RAL-819 3633 chr3R 31911653 31911713 chr3R 31911764 31911807 47 106 12.5 17.5 15.0 2.9 154 chr3R 31911653 intron heph - chr3R 31911730 intron heph - chr3R 31911807 intron heph - chr3R_47_31910001 chr3R_31910001 RAL-819 3634 chr3R 31924599 31924606 chr3R 31924695 31924711 8 104 0.0 33.0 16.5 0.5 112 chr3R 31924599 intron heph - chr3R 31924655 intron heph - chr3R 31924711 intron heph - chr3R_8_31920001 chr3R_31920001 RAL-819 3635 chr3R 31931168 31931216 chr3R 31931276 31931324 29 107 12.5 12.5 12.5 2.1 156 chr3R 31931168 intron heph - chr3R 31931246 intron heph - chr3R 31931324 intron heph - chr3R_29_31930001 chr3R_31930001 RAL-819 3636 chr3R 31945996 31946054 chr3R 31946110 31946167 45 110 7.5 17.5 12.5 3.3 171 chr3R 31945996 intron heph - chr3R 31946082 intron heph - chr3R 31946167 intron heph - chr3R_45_31945001 chr3R_31945001 RAL-819 3637 chr3R 31954006 31954032 chr3R 31954107 31954133 22 101 19.0 7.0 13.0 1.6 127 chr3R 31954006 intron heph - chr3R 31954070 intron heph - chr3R 31954133 intron heph - chr3R_22_31950001 chr3R_31950001 RAL-819 3638 chr3R 31954405 31954410 chr3R 31954511 31954521 5 109 12.0 10.0 11.0 0.4 116 chr3R 31954405 intron heph - chr3R 31954463 intron heph - chr3R 31954521 intron heph - chr3R_5_31950001 chr3R_31950001 RAL-819 3639 chr3R 31954414 31954454 chr3R 31954510 31954559 21 109 8.0 9.5 8.8 2.1 145 chr3R 31954414 intron heph - chr3R 31954486 intron heph - chr3R 31954559 intron heph - chr3R_21_31950001 chr3R_31950001 RAL-819 3640 chr3R 31957953 31958016 chr3R 31958060 31958123 21 106 0.5 10.5 5.5 3.2 170 chr3R 31957953 intron heph - chr3R 31958038 intron heph - chr3R 31958123 intron heph - chr3R_21_31955001 chr3R_31955001 RAL-819 3641 chr3R 31973880 31973890 chr3R 31973983 31973992 5 101 50.0 48.0 49.0 0.1 112 chr3R 31973880 intron heph - chr3R 31973936 intron heph - chr3R 31973992 intron heph - chr3R_5_31970001 chr3R_31970001 RAL-819 3642 chr3R 31973893 31973933 chr3R 31973982 31974020 18 97 47.5 46.5 47.0 0.4 127 chr3R 31973893 intron heph - chr3R 31973956 intron heph - chr3R 31974020 intron heph - chr3R_18_31970001 chr3R_31970001 RAL-819 3643 chr3R 31978533 31978587 chr3R 31978748 31978802 39 207 11.0 7.5 9.2 3.8 269 chr3R 31978533 intron,intron heph -,CG2003 + chr3R 31978668 intron,intron heph -,CG2003 + chr3R 31978802 intron,intron heph -,CG2003 + chr3R_39_31975001 chr3R_31975001 RAL-819 3644 chr3R 31997968 31997977 chr3R 32005463 32005472 blood 5 7495 22.5 15.0 18.8 0.3 7504 chr3R 31997968 intron heph - chr3R 32001720 intron heph - chr3R 32005472 intron heph - chr3R_5_32000001 chr3R_32000001 RAL-819 3645 chr3R 31997985 31998022 chr3R 32005460 32005517 blood 17 7493 8.5 13.0 10.8 1.4 7532 chr3R 31997985 intron heph - chr3R 32001751 intron heph - chr3R 32005517 intron heph - chr3R_17_32000001 chr3R_32000001 RAL-819 3646 chr3R 32022166 32022225 chr3R 32022452 32022511 55 284 16.0 7.5 11.8 4.3 345 chr3R 32022166 5` UTR CR45557 + chr3R 32022338 5` UTR CR45557 + chr3R 32022511 5` UTR CR45557 + chr3R_55_32020001 chr3R_32020001 RAL-819 3647 chr3R 32027528 32027587 chr3R 32027646 32027665 53 113 14.5 19.5 17.0 2.9 137 chr3R 32027528 intergenic not near genes chr3R 32027596 intergenic not near genes chr3R 32027665 intergenic not near genes chr3R_53_32025001 chr3R_32025001 RAL-819 3648 chr3R 32055501 32055548 chr3R 32055629 32055679 28 130 10.5 11.0 10.8 2.4 178 chr3R 32055501 3` UTR Map205 - chr3R 32055590 3` UTR Map205 - chr3R 32055679 3` UTR Map205 - chr3R_28_32055001 chr3R_32055001 RAL-819 3649 chr4 61352 61387 chr4 61589 61624 8 237 3.0 4.5 3.8 1.7 272 chr4 61352 intron CR43957 + chr4 61488 intron CR43957 + chr4 61624 intron CR43957 + chr4_8_60001 chr4_60001 RAL-819 3650 chr4 76473 76509 chr4 81941 81977 I-element 7 5467 5.5 6.0 5.8 1.0 5504 chr4 76473 intron pan + chr4 79225 intron pan + chr4 81977 intron pan + chr4_7_75001 chr4_75001 RAL-819 3651 chr4 132530 132579 chr4 132868 132903 24 335 9.5 5.5 7.5 2.8 373 chr4 132530 intron CG32000 + chr4 132716 intron,3` UTR CG32000 +,CR43956 - chr4 132903 intron CG32000 + chr4_24_130001 chr4_130001 RAL-819 3652 chr4 319965 320018 chr4 328166 328219 Stalker2 28 8201 15.0 8.5 11.8 2.2 8254 chr4 319965 3` UTR CG32850 + chr4 324092 intron CG32850 + chr4 328219 3` UTR,3` UTR CG32850 +,PMCA - chr4_28_320001 chr4_320001 RAL-819 3653 chr4 662161 662173 chr4 662831 662843 INE-1 5 668 9.5 4.0 6.8 0.6 682 chr4 662161 intron gw - chr4 662502 intron gw - chr4 662843 5` UTR gw - chr4_5_660001 chr4_660001 RAL-819 3654 chr4 662174 662201 chr4 662830 662871 INE-1 9 666 5.5 3.5 4.5 1.6 697 chr4 662174 intron gw - chr4 662522 intron gw - chr4 662871 5` UTR gw - chr4_9_660001 chr4_660001 RAL-819 3655 chr4 671585 671608 chr4 680191 680216 Tirant 24 8607 22.0 13.5 17.8 1.3 8631 chr4 671585 intron CG11360 + chr4 675900 intron CG11360 + chr4 680216 intron CG11360 + chr4_24_675001 chr4_675001 RAL-819 3656 chr4 671609 671629 chr4 680186 680237 Tirant 29 8605 14.5 11.5 13.0 2.1 8628 chr4 671609 intron CG11360 + chr4 675923 intron CG11360 + chr4 680237 intron CG11360 + chr4_29_675001 chr4_675001 RAL-819 3657 chr4 706627 706645 chr4 706835 706853 11 208 58.0 73.0 65.5 0.2 226 chr4 706627 intron ey + chr4 706740 intron ey + chr4 706853 intron ey + chr4_11_705001 chr4_705001 RAL-819 3658 chr4 1096300 1096346 chr4 1096498 1096549 22 199 7.5 5.5 6.5 2.9 249 chr4 1096300 intron sv + chr4 1096424 intron sv + chr4 1096549 intron sv + chr4_22_1095001 chr4_1095001 RAL-819 3659 chrX 288624 288680 chrX 288747 288777 38 119 10.0 8.5 9.2 3.7 153 chrX 288624 intron,intron CG3777 +,CG13375 - chrX 288700 intron,intron CG3777 +,CG13375 - chrX 288777 intron,intron CG3777 +,CG13375 - chrX_38_285001 chrX_285001 RAL-819 3660 chrX 295832 295868 chrX 303477 303513 412 19 7644 11.5 9.5 10.5 1.7 7681 chrX 295832 intron CG3777 + chrX 299672 intron CG3777 + chrX 303513 intron CG3777 + chrX_19_295001 chrX_295001 RAL-819 3661 chrX 295869 295882 chrX 303476 303481 412 5 7628 8.0 9.5 8.8 0.5 7612 chrX 295869 intron CG3777 + chrX 299675 intron CG3777 + chrX 303481 intron CG3777 + chrX_5_295001 chrX_295001 RAL-819 3662 chrX 318448 318496 chrX 323559 323607 flea 32 5109 14.0 12.0 13.0 2.3 5159 chrX 318448 intron,intron CG3777 +,CG32816 - chrX 321028 intron,intron CG3777 +,CG32816 - chrX 323607 intron,intron CG3777 +,CG32816 - chrX_32_320001 chrX_320001 RAL-819 3663 chrX 388767 388799 chrX 390334 390366 16 1564 49.5 47.5 48.5 0.3 1599 chrX 388767 intron CG32816 - chrX 389566 intron CG32816 - chrX 390366 intron CG32816 - chrX_16_385001 chrX_385001 RAL-819 3664 chrX 388246 388299 chrX 390568 390621 29 2324 64.0 55.0 59.5 0.5 2375 chrX 388246 intron CG32816 - chrX 389434 intron CG32816 - chrX 390621 intron CG32816 - chrX_29_385001 chrX_385001 RAL-819 3665 chrX 428397 428410 chrX 434606 434620 3S18 6 6210 31.0 11.5 21.2 0.3 6223 chrX 428397 intron CG32816 - chrX 431508 intron CG32816 - chrX 434620 intron CG32816 - chrX_6_430001 chrX_430001 RAL-819 3666 chrX 428411 428447 chrX 434601 434657 3S18 21 6207 18.0 11.5 14.8 1.3 6246 chrX 428411 intron CG32816 - chrX 431534 intron CG32816 - chrX 434657 intron CG32816 - chrX_21_430001 chrX_430001 RAL-819 3667 chrX 494581 494593 chrX 494698 494710 7 116 24.0 14.0 19.0 0.3 129 chrX 494581 intergenic CG17778 + chrX 494646 5` UTR CG17778 + chrX 494710 5` UTR CG17778 + chrX_7_490001 chrX_490001 RAL-819 3668 chrX 494594 494629 chrX 494690 494746 33 107 14.5 11.5 13.0 2.4 152 chrX 494594 intergenic CG17778 + chrX 494670 5` UTR CG17778 + chrX 494746 intron CG17778 + chrX_33_490001 chrX_490001 RAL-819 3669 chrX 551405 551422 chrX 558990 559009 412 14 7586 23.5 8.0 15.8 0.8 7604 chrX 551405 intron Appl + chrX 555207 intron Appl + chrX 559009 intron Appl + chrX_14_555001 chrX_555001 RAL-819 3670 chrX 551424 551454 chrX 558989 559041 412 35 7581 12.5 8.0 10.2 3.1 7617 chrX 551424 intron Appl + chrX 555232 intron Appl + chrX 559041 intron Appl + chrX_35_555001 chrX_555001 RAL-819 3671 chrX 714244 714286 chrX 714402 714444 37 155 8.5 10.5 9.5 3.5 200 chrX 714244 intron sdk + chrX 714344 intron sdk + chrX 714444 intron sdk + chrX_37_710001 chrX_710001 RAL-819 3672 chrX 802264 802266 chrX 802366 802368 4 102 44.5 18.5 31.5 0.1 104 chrX 802264 exon CG13359 - chrX 802316 exon CG13359 - chrX 802368 exon CG13359 - chrX_4_800001 chrX_800001 RAL-819 3673 chrX 802269 802284 chrX 802365 802386 13 98 38.0 18.0 28.0 0.4 117 chrX 802269 exon CG13359 - chrX 802328 exon CG13359 - chrX 802386 exon CG13359 - chrX_13_800001 chrX_800001 RAL-819 3674 chrX 802287 802292 chrX 802364 802394 6 96 31.5 17.5 24.5 0.2 107 chrX 802287 exon CG13359 - chrX 802340 exon CG13359 - chrX 802394 exon CG13359 - chrX_6_800001 chrX_800001 RAL-819 3675 chrX 802294 802321 chrX 802362 802414 25 94 19.0 17.5 18.2 1.3 120 chrX 802294 exon CG13359 - chrX 802354 exon CG13359 - chrX 802414 exon CG13359 - chrX_25_800001 chrX_800001 RAL-819 3676 chrX 812247 812257 chrX 817903 817913 297 5 5655 28.0 16.0 22.0 0.2 5666 chrX 812247 intron CG43867 - chrX 815080 intron CG43867 - chrX 817913 intron CG43867 - chrX_5_815001 chrX_815001 RAL-819 3677 chrX 812261 812267 chrX 817901 817920 297 5 5652 25.0 15.0 20.0 0.2 5659 chrX 812261 intron CG43867 - chrX 815090 intron CG43867 - chrX 817920 intron CG43867 - chrX_5_815001 chrX_815001 RAL-819 3678 chrX 812270 812298 chrX 817898 817902 297 20 5648 13.5 13.0 13.2 1.4 5632 chrX 812270 intron CG43867 - chrX 815086 intron CG43867 - chrX 817902 intron CG43867 - chrX_20_815001 chrX_815001 RAL-819 3679 chrX 827582 827595 chrX 835399 835412 roo 11 7816 20.0 8.0 14.0 0.7 7830 chrX 827582 intron CG43867 - chrX 831497 intron CG43867 - chrX 835412 intron CG43867 - chrX_11_830001 chrX_830001 RAL-819 3680 chrX 827596 827632 chrX 835394 835449 roo 29 7814 8.5 7.5 8.0 3.2 7853 chrX 827596 intron CG43867 - chrX 831522 intron CG43867 - chrX 835449 intron CG43867 - chrX_29_830001 chrX_830001 RAL-819 3681 chrX 888688 888700 chrX 888792 888804 9 103 16.5 0.0 8.2 1.0 116 chrX 888688 intron CG43867 - chrX 888746 intron CG43867 - chrX 888804 intron CG43867 - chrX_9_885001 chrX_885001 RAL-819 3682 chrX 906676 906733 chrX 908490 908508 S-element 43 1812 12.0 14.0 13.0 3.1 1832 chrX 906676 intron CG43867 - chrX 907592 intron CG43867 - chrX 908508 intron CG43867 - chrX_43_905001 chrX_905001 RAL-819 3683 chrX 949108 949127 chrX 949229 949248 12 121 10.5 23.0 16.8 0.7 140 chrX 949108 3` UTR CG3690 - chrX 949178 3` UTR CG3690 - chrX 949248 3` UTR CG3690 - chrX_12_945001 chrX_945001 RAL-819 3684 chrX 1051051 1051074 chrX 1051154 1051177 17 103 26.5 22.5 24.5 0.7 126 chrX 1051051 intron CR44779 + chrX 1051114 intron CR44779 + chrX 1051177 intron CR44779 + chrX_17_1050001 chrX_1050001 RAL-819 3685 chrX 1051075 1051079 chrX 1051148 1051182 6 96 23.5 26.0 24.8 0.2 107 chrX 1051075 intron CR44779 + chrX 1051128 intron CR44779 + chrX 1051182 intron CR44779 + chrX_6_1050001 chrX_1050001 RAL-819 3686 chrX 1051081 1051087 chrX 1051143 1051190 11 96 19.0 25.5 22.2 0.5 109 chrX 1051081 intron CR44779 + chrX 1051136 intron CR44779 + chrX 1051190 intron CR44779 + chrX_11_1050001 chrX_1050001 RAL-819 3687 chrX 1063733 1063751 chrX 1072551 1072569 roo 11 8818 27.0 16.5 21.8 0.5 8836 chrX 1063733 intron CR44779 + chrX 1068151 intron CR44779 + chrX 1072569 intron CR44779 + chrX_11_1065001 chrX_1065001 RAL-819 3688 chrX 1151760 1151813 chrX 1152050 1152103 40 289 8.0 9.0 8.5 4.2 343 chrX 1151760 intergenic not near genes chrX 1151932 intergenic not near genes chrX 1152103 intergenic not near genes chrX_40_1150001 chrX_1150001 RAL-819 3689 chrX 1229631 1229688 chrX 1229742 1229799 47 106 15.0 10.0 12.5 3.5 168 chrX 1229631 intron CG3638 - chrX 1229715 intron CG3638 - chrX 1229799 intron CG3638 - chrX_47_1225001 chrX_1225001 RAL-819 3690 chrX 1253707 1253762 chrX 1253814 1253869 52 102 7.5 11.0 9.2 5.1 162 chrX 1253707 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253869 intron Atf3 - chrX_52_1250001 chrX_1250001 RAL-819 3691 chrX 1357755 1357760 chrX 1367950 1367951 Doc 5 10194 37.0 17.0 27.0 0.2 10196 chrX 1357755 intergenic png - chrX 1362853 intergenic not near genes chrX 1367951 intergenic not near genes chrX_5_1360001 chrX_1360001 RAL-819 3692 chrX 1357761 1357803 chrX 1367949 1367998 Doc 31 10193 17.0 17.0 17.0 1.7 10237 chrX 1357761 intergenic png - chrX 1362880 intergenic not near genes chrX 1367998 intergenic not near genes chrX_31_1360001 chrX_1360001 RAL-819 3693 chrX 1518016 1518070 chrX 1523443 1523497 jockey 37 5420 9.0 10.0 9.5 3.5 5481 chrX 1518016 intergenic inc + chrX 1520756 intergenic not near genes chrX 1523497 intergenic not near genes chrX_37_1520001 chrX_1520001 RAL-819 3694 chrX 1559901 1559952 chrX 1560010 1560047 40 107 6.5 12.5 9.5 3.8 146 chrX 1559901 intron Mur2B - chrX 1559974 intron Mur2B - chrX 1560047 intron Mur2B - chrX_40_1555001 chrX_1555001 RAL-819 3695 chrX 1627965 1628007 chrX 1635440 1635462 gtwin 15 7485 13.0 11.5 12.2 1.1 7497 chrX 1627965 intron,intron Mur2B -,br + chrX 1631714 intron,intron Mur2B -,br + chrX 1635462 intron,intron Mur2B -,br + chrX_15_1630001 chrX_1630001 RAL-819 3696 chrX 1706831 1706842 chrX 1706932 1706933 5 99 18.0 24.0 21.0 0.2 102 chrX 1706831 intergenic not near genes chrX 1706882 intergenic not near genes chrX 1706933 intergenic not near genes chrX_5_1705001 chrX_1705001 RAL-819 3697 chrX 1845713 1845758 chrX 1845838 1845883 38 123 11.0 10.5 10.8 3.2 170 chrX 1845713 intron CG42666 + chrX 1845798 intron CG42666 + chrX 1845883 intron CG42666 + chrX_38_1845001 chrX_1845001 RAL-819 3698 chrX 1930512 1930570 chrX 1938108 1938146 opus 43 7590 6.5 10.5 8.5 4.5 7634 chrX 1930512 3` UTR CG11596 + chrX 1934329 intergenic not near genes chrX 1938146 3` UTR CG3857 - chrX_43_1930001 chrX_1930001 RAL-819 3699 chrX 1954863 1954906 chrX 1962828 1962871 Stalker2 22 7957 16.5 8.0 12.2 1.7 8008 chrX 1954863 intron Hr4 + chrX 1958867 intron Hr4 + chrX 1962871 intron Hr4 + chrX_22_1955001 chrX_1955001 RAL-819 3700 chrX 1954909 1954919 chrX 1962826 1962851 Stalker2 6 7944 8.5 8.0 8.2 0.7 7942 chrX 1954909 intron Hr4 + chrX 1958880 intron Hr4 + chrX 1962851 intron Hr4 + chrX_6_1955001 chrX_1955001 RAL-819 3701 chrX 2023932 2023983 chrX 2024079 2024131 21 144 52.5 59.5 56.0 0.4 199 chrX 2023932 3` UTR,3` UTR east +,Actn - chrX 2024032 3` UTR,3` UTR east +,Actn - chrX 2024131 3` UTR,3` UTR east +,Actn - chrX_21_2020001 chrX_2020001 RAL-819 3702 chrX 2020868 2020921 chrX 2025562 2025615 31 4701 84.5 71.0 77.8 0.4 4747 chrX 2020868 exon east + chrX 2023242 3` UTR east + chrX 2025615 exon Actn - chrX_31_2020001 chrX_2020001 RAL-819 3703 chrX 2137971 2138016 chrX 17746956 17746974 4 15608981 56.5 55.5 56.0 0.1 15609003 chrX 2137971 5` UTR ph-p - chrX 9942472 intergenic not near genes chrX 17746974 exon CG42684 + chrX_4_9940001 chrX_9940001 RAL-819 3704 chrX 2394268 2394288 chrX 2394375 2394395 12 106 16.0 15.5 15.8 0.7 127 chrX 2394268 intergenic not near genes chrX 2394332 intergenic not near genes chrX 2394395 intergenic not near genes chrX_12_2390001 chrX_2390001 RAL-819 3705 chrX 2394290 2394293 chrX 2394367 2394400 6 102 14.0 12.5 13.2 0.4 110 chrX 2394290 intergenic not near genes chrX 2394345 intergenic not near genes chrX 2394400 intergenic not near genes chrX_6_2390001 chrX_2390001 RAL-819 3706 chrX 2394294 2394308 chrX 2394365 2394410 12 100 9.5 12.0 10.8 1.0 116 chrX 2394294 intergenic not near genes chrX 2394352 intergenic not near genes chrX 2394410 intergenic not near genes chrX_12_2390001 chrX_2390001 RAL-819 3707 chrX 2399815 2399824 chrX 2408193 2408202 roo 5 8376 29.0 17.0 23.0 0.2 8387 chrX 2399815 intergenic not near genes chrX 2404008 intergenic not near genes chrX 2408202 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-819 3708 chrX 2399826 2399871 chrX 2408189 2408208 roo 41 8368 7.5 16.5 12.0 3.2 8382 chrX 2399826 intergenic not near genes chrX 2404017 intergenic not near genes chrX 2408208 intergenic not near genes chrX_41_2400001 chrX_2400001 RAL-819 3709 chrX 2429625 2429667 chrX 2429731 2429773 13 105 0.0 7.5 3.8 2.7 148 chrX 2429625 intergenic not near genes chrX 2429699 intergenic not near genes chrX 2429773 intergenic not near genes chrX_13_2425001 chrX_2425001 RAL-819 3710 chrX 2517825 2517877 chrX 2517927 2517979 27 102 13.0 11.0 12.0 2.1 154 chrX 2517825 intron trol - chrX 2517902 intron trol - chrX 2517979 intron trol - chrX_27_2515001 chrX_2515001 RAL-819 3711 chrX 2525464 2525507 chrX 2525560 2525613 44 101 7.5 13.0 10.2 3.9 149 chrX 2525464 intron trol - chrX 2525538 intron trol - chrX 2525613 intron trol - chrX_44_2525001 chrX_2525001 RAL-819 3712 chrX 2559335 2559389 chrX 2559448 2559502 48 109 9.5 13.5 11.5 3.8 167 chrX 2559335 intron Pdfr + chrX 2559418 intron Pdfr + chrX 2559502 intron Pdfr + chrX_48_2555001 chrX_2555001 RAL-819 3713 chrX 2568169 2568226 chrX 2568442 2568492 49 268 11.5 9.5 10.5 4.3 323 chrX 2568169 intron Pdfr + chrX 2568330 intron Pdfr + chrX 2568492 intron Pdfr + chrX_49_2565001 chrX_2565001 RAL-819 3714 chrX 2578788 2578842 chrX 2578905 2578959 45 115 14.0 19.5 16.8 2.5 171 chrX 2578788 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578959 intergenic Vha36-3 -,Pdfr + chrX_45_2575001 chrX_2575001 RAL-819 3715 chrX 2610363 2610415 chrX 2617505 2617557 HMS-Beagle 21 7139 12.5 17.0 14.8 1.3 7194 chrX 2610363 intergenic CG8636 - chrX 2613960 intergenic not near genes chrX 2617557 intergenic Tsp3A - chrX_21_2610001 chrX_2610001 RAL-819 3716 chrX 2758021 2758076 chrX 2758127 2758177 40 102 10.0 10.5 10.2 3.6 156 chrX 2758021 intron kirre + chrX 2758099 intron kirre + chrX 2758177 intron kirre + chrX_40_2755001 chrX_2755001 RAL-819 3717 chrX 2807336 2807390 chrX 2807456 2807510 33 118 11.5 8.5 10.0 3.0 174 chrX 2807336 intron kirre + chrX 2807423 intron kirre + chrX 2807510 intron kirre + chrX_33_2805001 chrX_2805001 RAL-819 3718 chrX 2808906 2808923 chrX 2809011 2809028 11 105 25.0 27.0 26.0 0.4 122 chrX 2808906 intron kirre + chrX 2808967 intron kirre + chrX 2809028 intron kirre + chrX_11_2805001 chrX_2805001 RAL-819 3719 chrX 2823773 2823780 chrX 2832346 2832353 roo 6 8573 28.0 13.5 20.8 0.3 8580 chrX 2823773 intron kirre + chrX 2828063 intron kirre + chrX 2832353 intron kirre + chrX_6_2825001 chrX_2825001 RAL-819 3720 chrX 2838248 2838252 chrX 8784239 8784243 4 5945991 49.0 17.0 33.0 0.1 5945995 chrX 2838248 intron kirre + chrX 5811246 intergenic CR45529 + chrX 8784243 intron Lim1 - chrX_4_5810001 chrX_5810001 RAL-819 3721 chrX 2844879 2844930 chrX 2852313 2852365 mdg1 39 7435 6.0 12.0 9.0 3.9 7486 chrX 2844879 intron kirre + chrX 2848622 intron kirre + chrX 2852365 intron kirre + chrX_39_2845001 chrX_2845001 RAL-819 3722 chrX 2888088 2888145 chrX 2888191 2888248 48 100 13.0 10.5 11.8 3.8 160 chrX 2888088 intron kirre + chrX 2888168 intron kirre + chrX 2888248 intron kirre + chrX_48_2885001 chrX_2885001 RAL-819 3723 chrX 2963808 2963815 chrX 2963904 2963916 5 97 21.5 15.0 18.2 0.3 108 chrX 2963808 intron,intron kirre +,rst - chrX 2963862 intron,intron kirre +,rst - chrX 2963916 intron,intron kirre +,rst - chrX_5_2960001 chrX_2960001 RAL-819 3724 chrX 2972012 2972046 chrX 2972172 2972202 12 162 9.0 16.0 12.5 0.9 190 chrX 2972012 intron,intron kirre +,rst - chrX 2972107 intron,intron kirre +,rst - chrX 2972202 intron,intron kirre +,rst - chrX_12_2970001 chrX_2970001 RAL-819 3725 chrX 3022960 3023003 chrX 3023067 3023110 11 107 8.0 11.0 9.5 1.0 150 chrX 3022960 intron kirre + chrX 3023035 intron kirre + chrX 3023110 intron kirre + chrX_11_3020001 chrX_3020001 RAL-819 3726 chrX 3057996 3058036 chrX 3058262 3058301 pogo 21 264 11.0 5.0 8.0 2.3 305 chrX 3057996 intron kirre + chrX 3058148 intron kirre + chrX 3058301 intron kirre + chrX_21_3055001 chrX_3055001 RAL-819 3727 chrX 3058037 3058052 chrX 3058261 3058306 pogo 8 259 9.0 5.0 7.0 1.0 269 chrX 3058037 intron kirre + chrX 3058172 intron kirre + chrX 3058306 intron kirre + chrX_8_3055001 chrX_3055001 RAL-819 3728 chrX 3075608 3075649 chrX 3080943 3080981 Transpac 13 5334 4.0 0.0 2.0 4.3 5373 chrX 3075608 intron kirre + chrX 3078294 intron kirre + chrX 3080981 intron kirre + chrX_13_3075001 chrX_3075001 RAL-819 3729 chrX 3082572 3082606 chrX 3082670 3082708 24 96 17.5 19.5 18.5 1.2 136 chrX 3082572 intron kirre + chrX 3082640 intron kirre + chrX 3082708 intron kirre + chrX_24_3080001 chrX_3080001 RAL-819 3730 chrX 3120084 3120091 chrX 3120152 3120194 5 88 6.0 9.0 7.5 0.6 110 chrX 3120084 intron kirre + chrX 3120139 intron kirre + chrX 3120194 intron kirre + chrX_5_3120001 chrX_3120001 RAL-819 3731 chrX 3155699 3155745 chrX 3155813 3155839 26 108 13.5 12.0 12.8 1.9 140 chrX 3155699 intron N + chrX 3155769 intron N + chrX 3155839 intron N + chrX_26_3155001 chrX_3155001 RAL-819 3732 chrX 3206489 3206496 chrX 3206593 3206600 4 103 4.5 21.0 12.8 0.3 111 chrX 3206489 intron dnc + chrX 3206544 intron dnc + chrX 3206600 intron dnc + chrX_4_3205001 chrX_3205001 RAL-819 3733 chrX 3218489 3218538 chrX 3227658 3227712 roo 27 9173 6.0 13.0 9.5 2.6 9223 chrX 3218489 intron dnc + chrX 3223100 intron dnc + chrX 3227712 intron dnc + chrX_27_3220001 chrX_3220001 RAL-819 3734 chrX 3243612 3243622 chrX 3243781 3243791 10 169 25.5 17.0 21.2 0.5 179 chrX 3243612 intron dnc + chrX 3243702 intron dnc + chrX 3243791 intron dnc + chrX_10_3240001 chrX_3240001 RAL-819 3735 chrX 3243627 3243650 chrX 3243770 3243819 20 168 15.5 13.5 14.5 1.3 192 chrX 3243627 intron dnc + chrX 3243723 intron dnc + chrX 3243819 intron dnc + chrX_20_3240001 chrX_3240001 RAL-819 3736 chrX 3275500 3275551 chrX 3275612 3275663 32 111 11.5 7.5 9.5 3.0 163 chrX 3275500 intron dnc + chrX 3275582 intron dnc + chrX 3275663 intron dnc + chrX_32_3275001 chrX_3275001 RAL-819 3737 chrX 3306318 3306370 chrX 3306425 3306477 23 104 7.0 3.5 5.2 3.7 159 chrX 3306318 intron dnc + chrX 3306398 intron dnc + chrX 3306477 intron dnc + chrX_23_3305001 chrX_3305001 RAL-819 3738 chrX 3351790 3351806 chrX 3351901 3351917 6 109 20.0 37.0 28.5 0.2 127 chrX 3351790 intergenic not near genes chrX 3351854 intergenic not near genes chrX 3351917 intergenic not near genes chrX_6_3350001 chrX_3350001 RAL-819 3739 chrX 3365425 3365452 chrX 3365777 3365792 12 349 11.0 4.0 7.5 1.4 367 chrX 3365425 intergenic not near genes chrX 3365608 intergenic not near genes chrX 3365792 intergenic not near genes chrX_12_3365001 chrX_3365001 RAL-819 3740 chrX 3365475 3365482 chrX 3365826 3365833 4 351 3.5 20.5 12.0 0.3 358 chrX 3365475 intergenic not near genes chrX 3365654 intergenic not near genes chrX 3365833 intergenic not near genes chrX_4_3365001 chrX_3365001 RAL-819 3741 chrX 3398109 3398123 chrX 3398297 3398311 9 187 13.5 10.0 11.8 0.7 202 chrX 3398109 intron,intron CR44999 +,CG12535 - chrX 3398210 intron,intron CR44999 +,CG12535 - chrX 3398311 intron,intron CR44999 +,CG12535 - chrX_9_3395001 chrX_3395001 RAL-819 3742 chrX 3398126 3398159 chrX 3398296 3398345 27 184 7.0 9.5 8.2 2.9 219 chrX 3398126 intron,intron CR44999 +,CG12535 - chrX 3398236 intron,intron CR44999 +,CG12535 - chrX 3398345 intron,intron CR44999 +,CG12535 - chrX_27_3395001 chrX_3395001 RAL-819 3743 chrX 3414996 3415049 chrX 3421206 3421259 3S18 29 6209 6.0 6.5 6.2 4.0 6263 chrX 3414996 intron,intron CR44999 +,CG12535 - chrX 3418128 intron,intron CR44999 +,CG12535 - chrX 3421259 intron,intron CR44999 +,CG12535 - chrX_29_3415001 chrX_3415001 RAL-819 3744 chrX 3493077 3493113 chrX 3502250 3502280 roo 16 9178 11.0 7.5 9.2 1.6 9203 chrX 3493077 intron,intron CR44999 +,Gas8 - chrX 3497678 intron,intron CR44999 +,Gas8 - chrX 3502280 intron,intron CR44999 +,Gas8 - chrX_16_3495001 chrX_3495001 RAL-819 3745 chrX 3493114 3493124 chrX 3502249 3502286 roo 9 9165 8.5 7.5 8.0 1.0 9172 chrX 3493114 intron,intron CR44999 +,Gas8 - chrX 3497700 intron,intron CR44999 +,Gas8 - chrX 3502286 intron,intron CR44999 +,Gas8 - chrX_9_3495001 chrX_3495001 RAL-819 3746 chrX 3535387 3535433 chrX 3535499 3535547 22 115 7.5 10.5 9.0 2.2 160 chrX 3535387 intron CG32791 - chrX 3535467 intron CG32791 - chrX 3535547 intron CG32791 - chrX_22_3535001 chrX_3535001 RAL-819 3747 chrX 3582702 3582725 chrX 3582808 3582833 18 106 16.0 14.0 15.0 1.1 131 chrX 3582702 intron AstA-R1 + chrX 3582768 intron AstA-R1 + chrX 3582833 intron AstA-R1 + chrX_18_3580001 chrX_3580001 RAL-819 3748 chrX 3597528 3597581 chrX 3619721 3619759 roo 45 22191 13.5 17.0 15.2 2.8 22231 chrX 3597528 intron AstA-R1 + chrX 3608644 intron AstA-R1 + chrX 3619759 intron AstA-R1 + chrX_45_3605001 chrX_3605001 RAL-819 3749 chrX 3626122 3626142 chrX 3626232 3626252 21 109 6.0 0.5 3.2 5.0 130 chrX 3626122 intron AstA-R1 + chrX 3626187 intron AstA-R1 + chrX 3626252 intron AstA-R1 + chrX_21_3625001 chrX_3625001 RAL-819 3750 chrX 3640307 3640313 chrX 3640436 3640443 6 130 9.5 12.0 10.8 0.5 136 chrX 3640307 intron AstA-R1 + chrX 3640375 intron AstA-R1 + chrX 3640443 intron AstA-R1 + chrX_6_3640001 chrX_3640001 RAL-819 3751 chrX 3703684 3703700 chrX 3703797 3703801 5 109 9.0 6.0 7.5 0.6 117 chrX 3703684 intergenic CR45102 + chrX 3703742 intergenic CR45102 + chrX 3703801 intergenic not near genes chrX_5_3700001 chrX_3700001 RAL-819 3752 chrX 3726746 3726766 chrX 3730157 3730188 NOF 13 3421 7.0 0.0 3.5 2.9 3442 chrX 3726746 intron tlk + chrX 3728467 intron tlk + chrX 3730188 intron tlk + chrX_13_3725001 chrX_3725001 RAL-819 3753 chrX 3726767 3726794 chrX 3730154 3730185 NOF 9 3415 5.0 0.0 2.5 2.6 3418 chrX 3726767 intron tlk + chrX 3728476 intron tlk + chrX 3730185 intron tlk + chrX_9_3725001 chrX_3725001 RAL-819 3754 chrX 3862805 3862848 chrX 3862917 3862960 13 112 7.5 12.0 9.8 1.2 155 chrX 3862805 intergenic yin - chrX 3862882 intergenic yin - chrX 3862960 intergenic yin - chrX_13_3860001 chrX_3860001 RAL-819 3755 chrX 3866081 3866129 chrX 3866184 3866226 29 102 5.0 1.5 3.2 6.9 145 chrX 3866081 intron yin - chrX 3866154 intron yin - chrX 3866226 intron yin - chrX_29_3865001 chrX_3865001 RAL-819 3756 chrX 3986839 3986894 chrX 3994497 3994552 412 49 7656 7.5 11.0 9.2 4.8 7713 chrX 3986839 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994552 intergenic not near genes chrX_49_3990001 chrX_3990001 RAL-819 3757 chrX 4029511 4029559 chrX 4029720 4029772 19 214 12.5 8.5 10.5 1.7 261 chrX 4029511 intergenic not near genes chrX 4029642 intergenic not near genes chrX 4029772 intergenic not near genes chrX_19_4025001 chrX_4025001 RAL-819 3758 chrX 4048476 4048501 chrX 4048577 4048602 26 100 21.5 11.0 16.2 1.5 126 chrX 4048476 3` UTR CR45482 - chrX 4048539 3` UTR CR45482 - chrX 4048602 3` UTR CR45482 - chrX_26_4045001 chrX_4045001 RAL-819 3759 chrX 4048502 4048528 chrX 4048575 4048617 20 97 13.5 10.5 12.0 1.5 115 chrX 4048502 3` UTR CR45482 - chrX 4048560 3` UTR CR45482 - chrX 4048617 3` UTR CR45482 - chrX_20_4045001 chrX_4045001 RAL-819 3760 chrX 4067987 4067988 chrX 10754861 10754863 6 6686874 55.0 59.0 57.0 0.1 6686876 chrX 4067987 intergenic not near genes chrX 7411425 3` UTR CG42246 - chrX 10754863 intron Rph - chrX_6_7410001 chrX_7410001 RAL-819 3761 chrX 4132642 4132701 chrX 4132836 4132895 30 193 9.0 9.0 9.0 3.0 253 chrX 4132642 3` UTR GlcAT-I + chrX 4132768 3` UTR GlcAT-I + chrX 4132895 3` UTR Fas2 - chrX_30_4130001 chrX_4130001 RAL-819 3762 chrX 4157871 4157917 chrX 4164949 4164978 297 35 7075 13.0 8.0 10.5 3.0 7107 chrX 4157871 intron Fas2 - chrX 4161424 intron Fas2 - chrX 4164978 intron Fas2 - chrX_35_4160001 chrX_4160001 RAL-819 3763 chrX 4195053 4195103 chrX 4195570 4195609 40 520 12.0 11.5 11.8 3.1 556 chrX 4195053 intron Fas2 - chrX 4195331 intron Fas2 - chrX 4195609 intron Fas2 - chrX_40_4195001 chrX_4195001 RAL-819 3764 chrX 4206209 4206243 chrX 4206347 4206382 24 137 7.5 13.5 10.5 2.1 173 chrX 4206209 intergenic Fas2 - chrX 4206296 intergenic Fas2 - chrX 4206382 intergenic Fas2 - chrX_24_4205001 chrX_4205001 RAL-819 3765 chrX 4209904 4209958 chrX 4210017 4210073 7 115 0.0 11.0 5.5 1.1 169 chrX 4209904 intergenic not near genes chrX 4209988 intergenic not near genes chrX 4210073 intergenic not near genes chrX_7_4205001 chrX_4205001 RAL-819 3766 chrX 4216322 4216337 chrX 4216419 4216441 7 103 18.0 17.5 17.8 0.4 119 chrX 4216322 intergenic not near genes chrX 4216382 intergenic CG15571 - chrX 4216441 intergenic CG15571 - chrX_7_4215001 chrX_4215001 RAL-819 3767 chrX 4252924 4252940 chrX 4253037 4253053 7 112 27.5 9.5 18.5 0.4 129 chrX 4252924 intergenic CG15576 - chrX 4252988 intergenic CG15576 - chrX 4253053 intergenic CG15576 - chrX_7_4250001 chrX_4250001 RAL-819 3768 chrX 4252941 4252981 chrX 4253036 4253076 28 105 9.0 9.5 9.2 2.7 135 chrX 4252941 intergenic CG15576 - chrX 4253008 intergenic CG15576 - chrX 4253076 intergenic CG15576 - chrX_28_4250001 chrX_4250001 RAL-819 3769 chrX 4262730 4262738 chrX 4262854 4262862 8 124 13.0 9.0 11.0 0.7 132 chrX 4262730 intergenic not near genes chrX 4262796 intergenic not near genes chrX 4262862 intergenic not near genes chrX_8_4260001 chrX_4260001 RAL-819 3770 chrX 4262739 4262788 chrX 4262852 4262912 50 119 4.5 8.5 6.5 6.7 173 chrX 4262739 intergenic not near genes chrX 4262826 intergenic not near genes chrX 4262912 intergenic not near genes chrX_50_4260001 chrX_4260001 RAL-819 3771 chrX 4361412 4361458 chrX 4361508 4361515 19 99 9.5 8.5 9.0 1.9 103 chrX 4361412 intron norpA + chrX 4361464 intron norpA + chrX 4361515 intron norpA + chrX_19_4360001 chrX_4360001 RAL-819 3772 chrX 4382353 4382383 chrX 4382458 4382488 25 104 13.5 0.0 6.8 3.2 135 chrX 4382353 3` UTR CG12688 + chrX 4382420 3` UTR CG12688 + chrX 4382488 intergenic CG12688 + chrX_25_4380001 chrX_4380001 RAL-819 3773 chrX 4389377 4389380 chrX 12946233 12946235 21 8556856 44.0 47.5 45.8 0.4 8556858 chrX 4389377 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946235 3` UTR fne + chrX_21_8665001 chrX_8665001 RAL-819 3774 chrX 4396950 4397006 chrX 4397060 4397086 37 107 11.0 10.5 10.8 3.1 136 chrX 4396950 intron CR32773 - chrX 4397018 intron CR32773 - chrX 4397086 intron CR32773 - chrX_37_4395001 chrX_4395001 RAL-819 3775 chrX 4401063 4401087 chrX 4401156 4401191 18 103 1.0 15.5 8.2 2.0 128 chrX 4401063 intron CR32773 - chrX 4401127 intron CR32773 - chrX 4401191 intron CR32773 - chrX_18_4400001 chrX_4400001 RAL-819 3776 chrX 4452800 4452803 chrX 14267306 14267309 4 9814506 49.0 24.5 36.8 0.1 9814509 chrX 4452800 intron,intron CR32773 -,bi + chrX 9360054 3` UTR mgl - chrX 14267309 intron na + chrX_4_9360001 chrX_9360001 RAL-819 3777 chrX 4589603 4589633 chrX 4589754 4589784 20 151 7.5 13.5 10.5 1.7 181 chrX 4589603 intron CR32773 - chrX 4589694 intron CR32773 - chrX 4589784 intron CR32773 - chrX_20_4585001 chrX_4585001 RAL-819 3778 chrX 4693762 4693765 chrX 4693857 4693885 7 109 0.5 11.5 6.0 1.0 123 chrX 4693762 intron ctp + chrX 4693824 intron ctp + chrX 4693885 intron ctp + chrX_7_4690001 chrX_4690001 RAL-819 3779 chrX 4693767 4693783 chrX 4693845 4693903 16 111 0.5 7.5 4.0 3.2 136 chrX 4693767 intron ctp + chrX 4693835 intron ctp + chrX 4693903 intron ctp + chrX_16_4690001 chrX_4690001 RAL-819 3780 chrX 4700374 4700425 chrX 4700740 4700793 jockey 38 365 7.0 5.5 6.2 5.3 419 chrX 4700374 3` UTR ctp + chrX 4700584 3` UTR ctp + chrX 4700793 3` UTR ctp + chrX_38_4700001 chrX_4700001 RAL-819 3781 chrX 4723551 4723562 chrX 4723656 4723667 8 105 20.0 15.5 17.8 0.4 116 chrX 4723551 exon Proc-R + chrX 4723609 intron Proc-R + chrX 4723667 intron Proc-R + chrX_8_4720001 chrX_4720001 RAL-819 3782 chrX 4723564 4723586 chrX 4723654 4723678 19 102 12.5 15.0 13.8 1.3 114 chrX 4723564 exon Proc-R + chrX 4723621 intron Proc-R + chrX 4723678 intron Proc-R + chrX_19_4720001 chrX_4720001 RAL-819 3783 chrX 4731793 4731812 chrX 4736911 4736923 jockey 11 5117 21.5 10.5 16.0 0.6 5130 chrX 4731793 intergenic not near genes chrX 4734358 intergenic not near genes chrX 4736923 intergenic not near genes chrX_11_4730001 chrX_4730001 RAL-819 3784 chrX 4763231 4763280 chrX 4763743 4763793 Stalker4 35 511 11.5 14.0 12.8 2.5 562 chrX 4763231 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763793 intergenic not near genes chrX_35_4760001 chrX_4760001 RAL-819 3785 chrX 4787205 4787266 chrX 4787323 4787376 40 117 10.5 13.5 12.0 3.1 171 chrX 4787205 intergenic not near genes chrX 4787290 intergenic not near genes chrX 4787376 intergenic not near genes chrX_40_4785001 chrX_4785001 RAL-819 3786 chrX 4792357 4792402 chrX 4792815 4792859 jockey 24 457 10.5 11.5 11.0 2.0 502 chrX 4792357 intergenic not near genes chrX 4792608 intergenic not near genes chrX 4792859 intergenic not near genes chrX_24_4790001 chrX_4790001 RAL-819 3787 chrX 4827947 4827986 chrX 4835343 4835382 Stalker4 16 7394 20.0 10.0 15.0 1.0 7435 chrX 4827947 intergenic not near genes chrX 4831664 intergenic not near genes chrX 4835382 intergenic not near genes chrX_16_4830001 chrX_4830001 RAL-819 3788 chrX 4827988 4827989 chrX 4835338 4835355 Stalker4 4 7365 19.5 8.5 14.0 0.3 7367 chrX 4827988 intergenic not near genes chrX 4831672 intergenic not near genes chrX 4835355 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-819 3789 chrX 4827990 4828002 chrX 4835337 4835376 Stalker4 17 7365 12.5 8.5 10.5 1.5 7386 chrX 4827990 intergenic not near genes chrX 4831683 intergenic not near genes chrX 4835376 intergenic not near genes chrX_17_4830001 chrX_4830001 RAL-819 3790 chrX 4871179 4871228 chrX 4871304 4871353 29 123 6.5 5.0 5.8 4.3 174 chrX 4871179 intron CG42594 + chrX 4871266 intron CG42594 + chrX 4871353 intron CG42594 + chrX_29_4870001 chrX_4870001 RAL-819 3791 chrX 4878854 4878910 chrX 4878988 4879044 29 134 6.0 3.0 4.5 5.3 190 chrX 4878854 intron CG42594 + chrX 4878949 intron CG42594 + chrX 4879044 intron CG42594 + chrX_29_4875001 chrX_4875001 RAL-819 3792 chrX 4929700 4929712 chrX 4929812 4929835 5 120 17.0 22.5 19.8 0.2 135 chrX 4929700 5` UTR CG44774 - chrX 4929768 5` UTR CG44774 - chrX 4929835 5` UTR CG44774 - chrX_5_4925001 chrX_4925001 RAL-819 3793 chrX 4931329 4931343 chrX 4931447 4931462 9 118 55.0 57.0 56.0 0.2 133 chrX 4931329 intron CG44774 - chrX 4931396 intron CG44774 - chrX 4931462 intron CG44774 - chrX_9_4930001 chrX_4930001 RAL-819 3794 chrX 4931354 4931378 chrX 4931441 4931495 13 115 51.0 56.0 53.5 0.2 141 chrX 4931354 intron CG44774 - chrX 4931424 intron CG44774 - chrX 4931495 intron CG44774 - chrX_13_4930001 chrX_4930001 RAL-819 3795 chrX 4956517 4956563 chrX 4956756 4956802 27 238 10.0 12.5 11.2 2.2 285 chrX 4956517 intergenic CR44833 - chrX 4956660 3` UTR CR44833 - chrX 4956802 intron CR44833 - chrX_27_4955001 chrX_4955001 RAL-819 3796 chrX 4990018 4990077 chrX 4997256 4997316 roo 38 7238 8.0 10.0 9.0 3.8 7298 chrX 4990018 intron CR44833 - chrX 4993667 intron CR44833 - chrX 4997316 intron CR44833 - chrX_38_4990001 chrX_4990001 RAL-819 3797 chrX 5096270 5096304 chrX 5103838 5103873 springer 22 7579 9.0 11.0 10.0 2.0 7603 chrX 5096270 intron,intron CG15465 +,rg + chrX 5100072 intron,intron CG15465 +,rg + chrX 5103873 intron,intron CG15465 +,rg + chrX_22_5100001 chrX_5100001 RAL-819 3798 chrX 5105443 5105461 chrX 5105558 5105574 5 114 15.5 18.5 17.0 0.3 131 chrX 5105443 intron,intron CG15465 +,rg + chrX 5105508 intron,intron CG15465 +,rg + chrX 5105574 intron,intron CG15465 +,rg + chrX_5_5105001 chrX_5105001 RAL-819 3799 chrX 5122793 5122841 chrX 5123047 5123074 10 250 9.5 0.0 4.8 1.7 281 chrX 5122793 intron,intron CG15465 +,rg + chrX 5122934 intron,intron CG15465 +,rg + chrX 5123074 intron,intron CG15465 +,rg + chrX_10_5120001 chrX_5120001 RAL-819 3800 chrX 5159699 5159750 chrX 5159819 5159870 20 118 10.0 8.5 9.2 2.0 171 chrX 5159699 intron,intron CG15465 +,rg + chrX 5159784 intron,intron CG15465 +,rg + chrX 5159870 intron,intron CG15465 +,rg + chrX_20_5155001 chrX_5155001 RAL-819 3801 chrX 5174589 5174614 chrX 5174791 5174816 14 201 6.0 14.5 10.2 1.2 227 chrX 5174589 intron,intron CG15465 +,rg + chrX 5174702 intron,intron CG15465 +,rg + chrX 5174816 intron,intron CG15465 +,rg + chrX_14_5170001 chrX_5170001 RAL-819 3802 chrX 5298844 5298901 chrX 5298954 5299011 39 106 7.5 9.5 8.5 4.1 167 chrX 5298844 intron CG42749 + chrX 5298928 intron CG42749 + chrX 5299011 intron CG42749 + chrX_39_5295001 chrX_5295001 RAL-819 3803 chrX 5338688 5338715 chrX 5339966 5339993 jockey 18 1275 18.5 10.0 14.2 1.2 1305 chrX 5338688 intergenic not near genes chrX 5339340 intergenic not near genes chrX 5339993 intergenic SK + chrX_18_5335001 chrX_5335001 RAL-819 3804 chrX 5338717 5338733 chrX 5339962 5339993 jockey 15 1267 12.0 8.5 10.2 1.3 1276 chrX 5338717 intergenic not near genes chrX 5339355 intergenic not near genes chrX 5339993 intergenic SK + chrX_15_5335001 chrX_5335001 RAL-819 3805 chrX 5349255 5349308 chrX 5349356 5349383 34 101 11.5 9.0 10.2 3.0 128 chrX 5349255 intron SK + chrX 5349319 intron SK + chrX 5349383 intron SK + chrX_34_5345001 chrX_5345001 RAL-819 3806 chrX 5350277 5350315 chrX 5350411 5350444 32 130 13.5 24.0 18.8 1.6 167 chrX 5350277 intron SK + chrX 5350360 intron SK + chrX 5350444 intron SK + chrX_32_5350001 chrX_5350001 RAL-819 3807 chrX 5458365 5458401 chrX 5458577 5458583 28 209 12.5 24.5 18.5 1.4 218 chrX 5458365 intron SPR + chrX 5458474 intron SPR + chrX 5458583 intron SPR + chrX_28_5455001 chrX_5455001 RAL-819 3808 chrX 5499817 5499851 chrX 5499932 5499948 21 112 14.5 17.0 15.8 1.2 131 chrX 5499817 intergenic CG32762 - chrX 5499882 intergenic CG32762 - chrX 5499948 intergenic CG32762 - chrX_21_5495001 chrX_5495001 RAL-819 3809 chrX 5499855 5499866 chrX 5499930 5499981 9 106 10.5 16.0 13.2 0.6 126 chrX 5499855 intergenic CG32762 - chrX 5499918 intergenic CG32762 - chrX 5499981 intergenic CG32762 - chrX_9_5495001 chrX_5495001 RAL-819 3810 chrX 5512009 5512065 chrX 5512135 5512194 35 126 5.5 5.0 5.2 5.6 185 chrX 5512009 intergenic not near genes chrX 5512102 intergenic not near genes chrX 5512194 intergenic not near genes chrX_35_5510001 chrX_5510001 RAL-819 3811 chrX 5524815 5524854 chrX 5528703 5528742 412 25 3887 21.5 10.5 16.0 1.5 3927 chrX 5524815 intergenic snoRNA:Psi28S-3342 - chrX 5526778 intergenic not near genes chrX 5528742 intergenic Vsx2 - chrX_25_5525001 chrX_5525001 RAL-819 3812 chrX 5566774 5566786 chrX 5566863 5566887 10 94 20.0 24.0 22.0 0.4 113 chrX 5566774 intergenic not near genes chrX 5566830 intergenic not near genes chrX 5566887 intergenic not near genes chrX_10_5565001 chrX_5565001 RAL-819 3813 chrX 5636055 5636077 chrX 5636158 5636181 15 103 11.0 11.5 11.2 1.2 126 chrX 5636055 intron CG42492 - chrX 5636118 intron CG42492 - chrX 5636181 intron CG42492 - chrX_15_5635001 chrX_5635001 RAL-819 3814 chrX 5727399 5727407 chrX 5732163 5732171 Doc 6 4764 14.0 6.5 10.2 0.5 4772 chrX 5727399 intron CG32758 - chrX 5729785 intron CG32758 - chrX 5732171 intron CG32758 - chrX_6_5725001 chrX_5725001 RAL-819 3815 chrX 5848732 5848785 chrX 5848966 5848994 31 230 5.5 5.5 5.5 4.8 262 chrX 5848732 intergenic not near genes chrX 5848863 intergenic not near genes chrX 5848994 intergenic not near genes chrX_31_5845001 chrX_5845001 RAL-819 3816 chrX 5883783 5883840 chrX 5884049 5884101 pogo 34 265 8.0 6.0 7.0 4.2 318 chrX 5883783 intron CR45668 - chrX 5883942 intron CR45668 - chrX 5884101 intron CR45668 - chrX_34_5880001 chrX_5880001 RAL-819 3817 chrX 5884149 5884190 chrX 5884403 5884456 pogo 26 261 11.5 9.0 10.2 2.3 307 chrX 5884149 intron CR45668 - chrX 5884302 intron CR45668 - chrX 5884456 intron CR45668 - chrX_26_5880001 chrX_5880001 RAL-819 3818 chrX 5886437 5886483 chrX 5886548 5886594 17 110 16.0 0.0 8.0 1.9 157 chrX 5886437 intron CR45668 - chrX 5886516 intron CR45668 - chrX 5886594 intron CR45668 - chrX_17_5885001 chrX_5885001 RAL-819 3819 chrX 5935063 5935113 chrX 5935164 5935169 17 97 4.5 5.5 5.0 2.8 106 chrX 5935063 intron CG3726 + chrX 5935116 intron CG3726 + chrX 5935169 intron CG3726 + chrX_17_5935001 chrX_5935001 RAL-819 3820 chrX 5976348 5976390 chrX 5976450 5976504 30 110 11.0 13.0 12.0 2.3 156 chrX 5976348 intron Grip + chrX 5976426 intron Grip + chrX 5976504 intron Grip + chrX_30_5975001 chrX_5975001 RAL-819 3821 chrX 6009216 6009275 chrX 6009581 6009640 44 365 9.5 10.0 9.8 4.1 424 chrX 6009216 intron mab-21 - chrX 6009428 intron mab-21 - chrX 6009640 intron mab-21 - chrX_44_6005001 chrX_6005001 RAL-819 3822 chrX 6071421 6071441 chrX 6071540 6071560 12 116 6.5 18.0 12.2 0.9 139 chrX 6071421 intron Tsp5D - chrX 6071490 intron Tsp5D - chrX 6071560 intron Tsp5D - chrX_12_6070001 chrX_6070001 RAL-819 3823 chrX 6080808 6080826 chrX 6080917 6080935 17 107 22.0 13.0 17.5 0.9 127 chrX 6080808 intron CG4660 - chrX 6080872 intron CG4660 - chrX 6080935 intron CG4660 - chrX_17_6080001 chrX_6080001 RAL-819 3824 chrX 6118673 6118731 chrX 6118780 6118838 49 102 11.5 15.0 13.2 3.5 165 chrX 6118673 intron Ca-alpha1T - chrX 6118756 intron Ca-alpha1T - chrX 6118838 intron Ca-alpha1T - chrX_49_6115001 chrX_6115001 RAL-819 3825 chrX 6171579 6171586 chrX 6179037 6179044 Quasimodo 4 7458 19.5 25.5 22.5 0.2 7465 chrX 6171579 intron Ca-alpha1T - chrX 6175312 intron Ca-alpha1T - chrX 6179044 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-819 3826 chrX 6171587 6171593 chrX 6179033 6179051 Quasimodo 5 7453 16.5 23.0 19.8 0.2 7464 chrX 6171587 intron Ca-alpha1T - chrX 6175319 intron Ca-alpha1T - chrX 6179051 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-819 3827 chrX 6171594 6171594 chrX 6179018 6179033 Quasimodo 4 7432 15.5 16.5 16.0 0.2 7439 chrX 6171594 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179033 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-819 3828 chrX 6171595 6171612 chrX 6179017 6179067 Quasimodo 17 7447 12.5 16.0 14.2 1.1 7472 chrX 6171595 intron Ca-alpha1T - chrX 6175331 intron Ca-alpha1T - chrX 6179067 intron Ca-alpha1T - chrX_17_6175001 chrX_6175001 RAL-819 3829 chrX 6215502 6215532 chrX 6215608 6215638 20 100 18.0 26.0 22.0 0.9 136 chrX 6215502 intergenic not near genes chrX 6215570 intergenic not near genes chrX 6215638 intergenic not near genes chrX_20_6215001 chrX_6215001 RAL-819 3830 chrX 6312175 6312225 chrX 6312273 6312331 44 105 10.5 7.0 8.8 4.5 156 chrX 6312175 intron CG15894 + chrX 6312253 intron CG15894 + chrX 6312331 intron CG15894 + chrX_44_6310001 chrX_6310001 RAL-819 3831 chrX 6314394 6314451 chrX 6314494 6314552 46 97 7.5 12.0 9.8 4.3 158 chrX 6314394 intron CG15894 + chrX 6314473 intron CG15894 + chrX 6314552 intron CG15894 + chrX_46_6310001 chrX_6310001 RAL-819 3832 chrX 6335219 6335244 chrX 6337730 6337779 Tirant 22 2532 0.5 11.0 5.8 3.2 2560 chrX 6335219 intergenic not near genes chrX 6336499 intergenic not near genes chrX 6337779 5` UTR CG3842 + chrX_22_6335001 chrX_6335001 RAL-819 3833 chrX 6357805 6357827 chrX 6357932 6357955 6 127 7.5 18.5 13.0 0.4 150 chrX 6357805 intron kdn + chrX 6357880 intron kdn + chrX 6357955 intron kdn + chrX_6_6355001 chrX_6355001 RAL-819 3834 chrX 6388641 6388693 chrX 6388742 6388769 30 98 5.0 8.5 6.8 3.8 128 chrX 6388641 intergenic not near genes chrX 6388705 intergenic not near genes chrX 6388769 intergenic not near genes chrX_30_6385001 chrX_6385001 RAL-819 3835 chrX 6392849 6392897 chrX 6397639 6397687 Doc 37 4789 13.0 13.5 13.2 2.6 4838 chrX 6392849 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397687 intergenic not near genes chrX_37_6395001 chrX_6395001 RAL-819 3836 chrX 6445321 6445333 chrX 6451094 6451116 297 6 5781 10.0 14.5 12.2 0.5 5795 chrX 6445321 intron CG42340 - chrX 6448218 intron CG42340 - chrX 6451116 intron CG42340 - chrX_6_6445001 chrX_6445001 RAL-819 3837 chrX 6562796 6562808 chrX 6571303 6571315 Tirant 13 8506 33.0 18.0 25.5 0.5 8519 chrX 6562796 intron CG34417 + chrX 6567056 intron CG34417 + chrX 6571315 intron CG34417 + chrX_13_6565001 chrX_6565001 RAL-819 3838 chrX 6562809 6562850 chrX 6571299 6571341 Tirant 44 8502 15.0 14.0 14.5 2.8 8532 chrX 6562809 intron CG34417 + chrX 6567075 intron CG34417 + chrX 6571341 intron CG34417 + chrX_44_6565001 chrX_6565001 RAL-819 3839 chrX 6591829 6591857 chrX 6591939 6591967 24 109 18.0 0.0 9.0 2.4 138 chrX 6591829 intron Pat1 + chrX 6591898 intron Pat1 + chrX 6591967 intron Pat1 + chrX_24_6590001 chrX_6590001 RAL-819 3840 chrX 6618442 6618474 chrX 6618545 6618572 26 101 19.0 25.5 22.2 1.1 130 chrX 6618442 intron pigs + chrX 6618507 intron pigs + chrX 6618572 intron pigs + chrX_26_6615001 chrX_6615001 RAL-819 3841 chrX 6653002 6653011 chrX 6653103 6653107 6 99 22.0 20.0 21.0 0.3 105 chrX 6653002 3` UTR pigs + chrX 6653054 intergenic pigs +,CG3226 - chrX 6653107 intergenic CG3226 -,pigs + chrX_6_6650001 chrX_6650001 RAL-819 3842 chrX 6733452 6733673 chrX 6733566 6733782 9 109 27.0 55.5 41.2 0.2 330 chrX 6733452 intron,intron CG3168 -,CR43461 + chrX 6733617 intron,intron CG3168 -,CR43461 + chrX 6733782 intron,intron CG3168 -,CR43461 + chrX_9_6730001 chrX_6730001 RAL-819 3843 chrX 6792060 6792092 chrX 6792175 6792208 6 110 10.0 11.5 10.8 0.5 148 chrX 6792060 intron C3G - chrX 6792134 intron C3G - chrX 6792208 intron C3G - chrX_6_6790001 chrX_6790001 RAL-819 3844 chrX 6794989 6795027 chrX 6795100 6795130 24 106 11.5 14.5 13.0 1.7 141 chrX 6794989 intron C3G - chrX 6795060 intron C3G - chrX 6795130 intron C3G - chrX_24_6795001 chrX_6795001 RAL-819 3845 chrX 6814265 6814281 chrX 6814368 6814384 6 103 21.5 2.0 11.8 0.5 119 chrX 6814265 intron iav + chrX 6814324 intron iav + chrX 6814384 intron iav + chrX_6_6810001 chrX_6810001 RAL-819 3846 chrX 6896203 6896227 chrX 6896299 6896331 4 103 6.5 18.5 12.5 0.3 128 chrX 6896203 intergenic not near genes chrX 6896267 intergenic not near genes chrX 6896331 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-819 3847 chrX 6897660 6897711 chrX 6897795 6897853 17 137 3.5 0.0 1.8 6.1 193 chrX 6897660 intergenic not near genes chrX 6897756 intergenic not near genes chrX 6897853 intergenic not near genes chrX_17_6895001 chrX_6895001 RAL-819 3848 chrX 6901358 6901387 chrX 6901454 6901474 14 98 12.0 11.5 11.8 1.1 116 chrX 6901358 intergenic not near genes chrX 6901416 intergenic not near genes chrX 6901474 intergenic not near genes chrX_14_6900001 chrX_6900001 RAL-819 3849 chrX 6941041 6941101 chrX 6941290 6941326 19 246 8.5 6.0 7.2 2.3 285 chrX 6941041 intron CG14431 + chrX 6941184 intron CG14431 + chrX 6941326 intron CG14431 + chrX_19_6940001 chrX_6940001 RAL-819 3850 chrX 6984598 6984652 chrX 6984700 6984749 36 101 7.5 4.5 6.0 5.1 151 chrX 6984598 intron ogre - chrX 6984674 intron ogre - chrX 6984749 intron ogre - chrX_36_6980001 chrX_6980001 RAL-819 3851 chrX 6988510 6988525 chrX 6988620 6988635 8 110 24.0 7.5 15.8 0.5 125 chrX 6988510 intron ogre - chrX 6988572 intron ogre - chrX 6988635 intron ogre - chrX_8_6985001 chrX_6985001 RAL-819 3852 chrX 6989480 6989534 chrX 6989592 6989625 40 110 6.5 13.0 9.8 3.7 145 chrX 6989480 intron ogre - chrX 6989552 intron ogre - chrX 6989625 intron ogre - chrX_40_6985001 chrX_6985001 RAL-819 3853 chrX 7022439 7022483 chrX 7022549 7022603 37 118 8.5 11.5 10.0 3.4 164 chrX 7022439 3` UTR CG12541 - chrX 7022521 3` UTR CG12541 - chrX 7022603 3` UTR CG12541 - chrX_37_7020001 chrX_7020001 RAL-819 3854 chrX 7023578 7023630 chrX 7030993 7031029 Tabor 37 7411 12.5 9.5 11.0 3.1 7451 chrX 7023578 intron CG12541 - chrX 7027304 intron CG12541 - chrX 7031029 intron CG12541 - chrX_37_7025001 chrX_7025001 RAL-819 3855 chrX 7125231 7125240 chrX 7134415 7134424 roo 6 9184 3.0 14.5 8.8 0.6 9193 chrX 7125231 intergenic not near genes chrX 7129828 intergenic not near genes chrX 7134424 intergenic not near genes chrX_6_7125001 chrX_7125001 RAL-819 3856 chrX 7125241 7125271 chrX 7134413 7134455 roo 20 9183 2.5 14.5 8.5 2.1 9214 chrX 7125241 intergenic not near genes chrX 7129848 intergenic not near genes chrX 7134455 intergenic not near genes chrX_20_7125001 chrX_7125001 RAL-819 3857 chrX 7293782 7293782 chrX 13057299 13057301 7 5763519 55.5 40.5 48.0 0.1 5763519 chrX 7293782 intron,intron CR44357 -,CG1677 - chrX 10175542 intron,intron CR44894 -,CG43902 + chrX 13057301 intron rad + chrX_7_10175001 chrX_10175001 RAL-819 3858 chrX 7381133 7381191 chrX 7381241 7381288 28 105 9.0 8.5 8.8 2.9 155 chrX 7381133 intron,intron CR44357 -,CG1677 - chrX 7381210 intron,intron CR44357 -,CG1677 - chrX 7381288 intron,intron CR44357 -,CG1677 - chrX_28_7380001 chrX_7380001 RAL-819 3859 chrX 7570612 7570667 chrX 7570771 7570826 29 157 8.0 12.5 10.2 2.6 214 chrX 7570612 intergenic not near genes chrX 7570719 intergenic not near genes chrX 7570826 intergenic not near genes chrX_29_7570001 chrX_7570001 RAL-819 3860 chrX 7702515 7702526 chrX 7702607 7702643 14 111 1.5 17.5 9.5 1.3 128 chrX 7702515 intron CHES-1-like - chrX 7702579 intron CHES-1-like - chrX 7702643 intron CHES-1-like - chrX_14_7700001 chrX_7700001 RAL-819 3861 chrX 7702881 7702894 chrX 7703345 7703358 jockey 10 464 32.0 15.5 23.8 0.4 477 chrX 7702881 intron CHES-1-like - chrX 7703120 intron CHES-1-like - chrX 7703358 intron CHES-1-like - chrX_10_7700001 chrX_7700001 RAL-819 3862 chrX 7702895 7702925 chrX 7703343 7703389 jockey 31 460 17.0 15.0 16.0 1.8 494 chrX 7702895 intron CHES-1-like - chrX 7703142 intron CHES-1-like - chrX 7703389 intron CHES-1-like - chrX_31_7700001 chrX_7700001 RAL-819 3863 chrX 7720527 7720582 chrX 7720634 7720689 20 102 10.0 3.5 6.8 2.6 162 chrX 7720527 intergenic not near genes chrX 7720608 intergenic not near genes chrX 7720689 intergenic not near genes chrX_20_7720001 chrX_7720001 RAL-819 3864 chrX 7737106 7737142 chrX 7737243 7737246 17 133 10.5 8.5 9.5 1.6 140 chrX 7737106 5` UTR Tom40 + chrX 7737176 intron Tom40 + chrX 7737246 intron Tom40 + chrX_17_7735001 chrX_7735001 RAL-819 3865 chrX 7832411 7832436 chrX 7832525 7832550 18 114 16.0 12.5 14.2 1.2 139 chrX 7832411 intron CG1402 + chrX 7832480 intron CG1402 + chrX 7832550 intron CG1402 + chrX_18_7830001 chrX_7830001 RAL-819 3866 chrX 7832439 7832465 chrX 7832521 7832579 21 111 7.5 11.5 9.5 2.0 140 chrX 7832439 intron CG1402 + chrX 7832509 intron CG1402 + chrX 7832579 intron CG1402 + chrX_21_7830001 chrX_7830001 RAL-819 3867 chrX 7845701 7845758 chrX 7847217 7847274 hopper2 37 1514 8.0 10.0 9.0 3.7 1573 chrX 7845701 intergenic not near genes chrX 7846488 intergenic not near genes chrX 7847274 intergenic not near genes chrX_37_7845001 chrX_7845001 RAL-819 3868 chrX 7881831 7881879 chrX 7881940 7881986 16 107 8.5 14.5 11.5 1.3 155 chrX 7881831 intergenic Ir7f -,Ir7e - chrX 7881908 intergenic Ir7f -,Ir7e - chrX 7881986 3` UTR Ir7f - chrX_16_7880001 chrX_7880001 RAL-819 3869 chrX 7931584 7931597 chrX 7931694 7931707 6 110 9.5 14.0 11.8 0.5 123 chrX 7931584 intergenic CG10778 -,CG10777 - chrX 7931646 intergenic CG10778 -,CG10777 - chrX 7931707 intergenic CG10778 -,CG10777 - chrX_6_7930001 chrX_7930001 RAL-819 3870 chrX 7931598 7931604 chrX 7931692 7931709 6 106 8.5 13.5 11.0 0.5 111 chrX 7931598 intergenic CG10778 -,CG10777 - chrX 7931654 intergenic CG10778 -,CG10777 - chrX 7931709 intergenic CG10778 -,CG10777 - chrX_6_7930001 chrX_7930001 RAL-819 3871 chrX 7968473 7968478 chrX 10884596 10884601 4 2916123 10.0 39.5 24.8 0.2 2916128 chrX 7968473 intron sn + chrX 9426537 intron mgl - chrX 10884601 intron Ork1 - chrX_4_9425001 chrX_9425001 RAL-819 3872 chrX 7968519 7968529 chrX 7968673 7968682 5 154 0.5 31.5 16.0 0.3 163 chrX 7968519 intron sn + chrX 7968600 intron sn + chrX 7968682 intron sn + chrX_5_7965001 chrX_7965001 RAL-819 3873 chrX 8024643 8024672 chrX 8024734 8024758 7 91 30.5 21.0 25.8 0.3 115 chrX 8024643 intron Tbh + chrX 8024700 intron Tbh + chrX 8024758 intron Tbh + chrX_7_8020001 chrX_8020001 RAL-819 3874 chrX 8031407 8031452 chrX 8035736 8035769 Juan 21 4329 12.0 9.5 10.8 1.8 4362 chrX 8031407 intergenic not near genes chrX 8033588 intergenic not near genes chrX 8035769 3` UTR CG2233 - chrX_21_8030001 chrX_8030001 RAL-819 3875 chrX 8063712 8063770 chrX 8063833 8063882 27 115 8.0 7.5 7.8 3.1 170 chrX 8063712 intron mys + chrX 8063797 intron mys + chrX 8063882 5` UTR mys + chrX_27_8060001 chrX_8060001 RAL-819 3876 chrX 8085548 8085594 chrX 8085659 8085705 38 110 11.0 14.5 12.8 2.8 157 chrX 8085548 intron,5` UTR CG2256 -,CR45535 + chrX 8085626 intron,5` UTR CG2256 -,CR45535 + chrX 8085705 intron,5` UTR CG2256 -,CR45535 + chrX_38_8085001 chrX_8085001 RAL-819 3877 chrX 8085595 8085603 chrX 8085658 8085714 9 106 6.0 14.0 10.0 0.8 119 chrX 8085595 intron,5` UTR CG2256 -,CR45535 + chrX 8085654 intron,5` UTR CG2256 -,CR45535 + chrX 8085714 intron,5` UTR CG2256 -,CR45535 + chrX_9_8085001 chrX_8085001 RAL-819 3878 chrX 8092266 8092321 chrX 8092376 8092431 45 105 9.5 7.5 8.5 4.7 165 chrX 8092266 intron Ubc-E2H - chrX 8092348 intron Ubc-E2H - chrX 8092431 intron Ubc-E2H - chrX_45_8090001 chrX_8090001 RAL-819 3879 chrX 8275289 8275302 chrX 8275401 8275407 10 110 33.5 8.5 21.0 0.5 118 chrX 8275289 exon CG1636 + chrX 8275348 exon CG1636 + chrX 8275407 3` UTR CG1636 + chrX_10_8275001 chrX_8275001 RAL-819 3880 chrX 8275303 8275348 chrX 8275400 8275459 37 108 13.0 8.5 10.8 3.1 156 chrX 8275303 exon CG1636 + chrX 8275381 3` UTR CG1636 + chrX 8275459 3` UTR CG1636 + chrX_37_8275001 chrX_8275001 RAL-819 3881 chrX 8279521 8279566 chrX 8279634 8279679 28 111 11.5 13.0 12.2 2.1 158 chrX 8279521 3` UTR nAChRalpha3 - chrX 8279600 3` UTR nAChRalpha3 - chrX 8279679 3` UTR nAChRalpha3 - chrX_28_8275001 chrX_8275001 RAL-819 3882 chrX 8355963 8356016 chrX 8356120 8356148 37 155 13.5 5.0 9.2 3.6 185 chrX 8355963 intron nAChRalpha3 - chrX 8356056 intron nAChRalpha3 - chrX 8356148 intron nAChRalpha3 - chrX_37_8355001 chrX_8355001 RAL-819 3883 chrX 8371129 8371177 chrX 8371315 8371356 6 180 8.0 1.5 4.8 1.0 227 chrX 8371129 intergenic not near genes chrX 8371242 intergenic not near genes chrX 8371356 intergenic not near genes chrX_6_8370001 chrX_8370001 RAL-819 3884 chrX 8536738 8536780 chrX 8536839 8536881 29 98 12.5 8.0 10.2 2.6 143 chrX 8536738 intron Nrg + chrX 8536810 intron Nrg + chrX 8536881 intron Nrg + chrX_29_8535001 chrX_8535001 RAL-819 3885 chrX 8544122 8544163 chrX 8544226 8544259 23 102 5.5 10.0 7.8 2.6 137 chrX 8544122 intron Nrg + chrX 8544190 intron Nrg + chrX 8544259 intron Nrg + chrX_23_8540001 chrX_8540001 RAL-819 3886 chrX 8601000 8601058 chrX 8601110 8601143 39 108 10.0 13.0 11.5 3.1 143 chrX 8601000 3` UTR Crag + chrX 8601072 3` UTR Crag + chrX 8601143 3` UTR Crag + chrX_39_8600001 chrX_8600001 RAL-819 3887 chrX 8606518 8606531 chrX 8606606 8606624 15 99 23.0 25.0 24.0 0.6 106 chrX 8606518 intergenic Caf1-180 - chrX 8606571 intergenic Caf1-180 - chrX 8606624 intergenic Caf1-180 - chrX_15_8605001 chrX_8605001 RAL-819 3888 chrX 8705661 8705691 chrX 8706138 8706168 16 476 9.0 9.5 9.2 1.6 507 chrX 8705661 intergenic not near genes chrX 8705914 intergenic not near genes chrX 8706168 intergenic not near genes chrX_16_8705001 chrX_8705001 RAL-819 3889 chrX 8708690 8708742 chrX 8708848 8708900 55 160 68.5 57.5 63.0 0.9 210 chrX 8708690 intergenic not near genes chrX 8708795 intergenic not near genes chrX 8708900 intergenic not near genes chrX_55_8705001 chrX_8705001 RAL-819 3890 chrX 8727376 8727427 chrX 8727478 8727529 20 99 7.5 10.0 8.8 2.0 153 chrX 8727376 intergenic not near genes chrX 8727452 intergenic not near genes chrX 8727529 intergenic not near genes chrX_20_8725001 chrX_8725001 RAL-819 3891 chrX 8744275 8744317 chrX 8744447 8744492 31 176 9.0 12.5 10.8 2.6 217 chrX 8744275 intergenic not near genes chrX 8744384 intergenic not near genes chrX 8744492 intergenic not near genes chrX_31_8740001 chrX_8740001 RAL-819 3892 chrX 8772222 8772252 chrX 8772326 8772356 25 102 20.0 24.0 22.0 1.1 134 chrX 8772222 intron Lim1 - chrX 8772289 intron Lim1 - chrX 8772356 intron Lim1 - chrX_25_8770001 chrX_8770001 RAL-819 3893 chrX 8787467 8787475 chrX 8787589 8787597 5 121 24.0 15.0 19.5 0.2 130 chrX 8787467 intron Lim1 - chrX 8787532 intron Lim1 - chrX 8787597 intron Lim1 - chrX_5_8785001 chrX_8785001 RAL-819 3894 chrX 8787478 8787501 chrX 8787585 8787606 14 114 14.0 13.5 13.8 0.9 128 chrX 8787478 intron Lim1 - chrX 8787542 intron Lim1 - chrX 8787606 intron Lim1 - chrX_14_8785001 chrX_8785001 RAL-819 3895 chrX 8894077 8894111 chrX 8894203 8894237 10 126 10.5 6.5 8.5 1.1 160 chrX 8894077 intron Moe - chrX 8894157 intron Moe - chrX 8894237 intron Moe - chrX_10_8890001 chrX_8890001 RAL-819 3896 chrX 8894113 8894132 chrX 8894199 8894258 10 114 5.5 5.0 5.2 1.6 145 chrX 8894113 intron Moe - chrX 8894186 intron Moe - chrX 8894258 intron Moe - chrX_10_8890001 chrX_8890001 RAL-819 3897 chrX 8913496 8913544 chrX 8913630 8913653 18 127 7.5 12.5 10.0 1.6 157 chrX 8913496 intron rdgA + chrX 8913574 intron rdgA + chrX 8913653 intron rdgA + chrX_18_8910001 chrX_8910001 RAL-819 3898 chrX 8922307 8922356 chrX 8922766 8922815 jockey 47 456 15.5 14.0 14.8 3.0 508 chrX 8922307 intron rdgA + chrX 8922561 intron rdgA + chrX 8922815 intron rdgA + chrX_47_8920001 chrX_8920001 RAL-819 3899 chrX 8944880 8944924 chrX 8945132 8945176 37 250 10.0 7.5 8.8 3.8 296 chrX 8944880 intron rdgA + chrX 8945028 intron rdgA + chrX 8945176 intron rdgA + chrX_37_8945001 chrX_8945001 RAL-819 3900 chrX 8948733 8948788 chrX 8956268 8956322 roo 30 7535 3.0 6.5 4.8 5.2 7589 chrX 8948733 intron rdgA + chrX 8952528 intron rdgA + chrX 8956322 intron rdgA + chrX_30_8950001 chrX_8950001 RAL-819 3901 chrX 9003201 9003236 chrX 9003299 9003333 24 100 9.5 13.0 11.2 2.0 132 chrX 9003201 intron,intron rdgA +,CR43836 - chrX 9003267 intron,intron rdgA +,CR43836 - chrX 9003333 intron,intron rdgA +,CR43836 - chrX_24_9000001 chrX_9000001 RAL-819 3902 chrX 9041989 9042019 chrX 9042122 9042153 9 133 0.0 13.0 6.5 1.2 164 chrX 9041989 intron,intron CR43836 -,CG42388 + chrX 9042071 intron,intron CR43836 -,CG42388 + chrX 9042153 intron,intron CR43836 -,CG42388 + chrX_9_9040001 chrX_9040001 RAL-819 3903 chrX 9129451 9129508 chrX 9129562 9129612 47 108 9.5 10.5 10.0 4.3 161 chrX 9129451 intron fend - chrX 9129532 intron fend - chrX 9129612 intron fend - chrX_47_9125001 chrX_9125001 RAL-819 3904 chrX 9187989 9188030 chrX 9188091 9188131 20 102 9.0 11.0 10.0 1.8 142 chrX 9187989 3` UTR mei-P26 + chrX 9188060 3` UTR mei-P26 + chrX 9188131 3` UTR mei-P26 + chrX_20_9185001 chrX_9185001 RAL-819 3905 chrX 9229883 9229898 chrX 9229988 9230003 9 104 24.0 13.5 18.8 0.5 120 chrX 9229883 intron CG12121 - chrX 9229943 intron CG12121 - chrX 9230003 intron CG12121 - chrX_9_9225001 chrX_9225001 RAL-819 3906 chrX 9229899 9229940 chrX 9229984 9230045 23 100 12.0 14.5 13.2 1.6 146 chrX 9229899 intron CG12121 - chrX 9229972 intron CG12121 - chrX 9230045 intron CG12121 - chrX_23_9225001 chrX_9225001 RAL-819 3907 chrX 9272993 9273045 chrX 9273099 9273151 31 104 8.5 8.0 8.2 3.4 158 chrX 9272993 intergenic Cfp1 -,CG16892 + chrX 9273072 intergenic Cfp1 -,CG16892 + chrX 9273151 intergenic Cfp1 -,CG16892 + chrX_31_9270001 chrX_9270001 RAL-819 3908 chrX 9289689 9289715 chrX 9289797 9289824 14 107 11.5 18.5 15.0 0.9 135 chrX 9289689 intron lz + chrX 9289756 intron lz + chrX 9289824 intron lz + chrX_14_9285001 chrX_9285001 RAL-819 3909 chrX 9337915 9337973 chrX 9338032 9338079 41 114 10.0 10.0 10.0 3.7 164 chrX 9337915 intron CG34449 - chrX 9337997 intron CG34449 - chrX 9338079 exon CG34449 - chrX_41_9335001 chrX_9335001 RAL-819 3910 chrX 9380405 9380407 chrX 15012583 15012595 5 5632186 46.0 16.0 31.0 0.2 5632190 chrX 9380405 intron mgl - chrX 12196500 exon Ten-a + chrX 15012595 intron hiw - chrX_5_12195001 chrX_12195001 RAL-819 3911 chrX 9430209 9430226 chrX 9430632 9430649 16 422 24.5 5.5 15.0 1.0 440 chrX 9430209 intron mgl - chrX 9430429 intron mgl - chrX 9430649 intron mgl - chrX_16_9430001 chrX_9430001 RAL-819 3912 chrX 9465740 9465796 chrX 9466110 9466159 41 369 11.5 10.0 10.8 3.5 419 chrX 9465740 intron mgl - chrX 9465950 intron mgl - chrX 9466159 intron mgl - chrX_41_9465001 chrX_9465001 RAL-819 3913 chrX 9508114 9508130 chrX 9509657 9509673 jockey 7 1543 21.5 15.0 18.2 0.4 1559 chrX 9508114 intron CG32700 - chrX 9508894 intron CG32700 - chrX 9509673 intron CG32700 - chrX_7_9505001 chrX_9505001 RAL-819 3914 chrX 9508133 9508161 chrX 9509656 9509699 jockey 32 1540 12.5 14.0 13.2 2.3 1566 chrX 9508133 intron CG32700 - chrX 9508916 intron CG32700 - chrX 9509699 intron CG32700 - chrX_32_9505001 chrX_9505001 RAL-819 3915 chrX 9544874 9544931 chrX 9544983 9545040 23 108 8.5 12.0 10.2 2.1 166 chrX 9544874 intron CG32700 - chrX 9544957 intron CG32700 - chrX 9545040 intron CG32700 - chrX_23_9540001 chrX_9540001 RAL-819 3916 chrX 9575769 9575822 chrX 9576113 9576136 mdg3 40 342 16.0 16.0 16.0 2.4 367 chrX 9575769 intron,exon CG32699 -,CG42395 - chrX 9575952 intron,intron CG32699 -,CG42395 - chrX 9576136 intron,5` UTR CG32699 -,CG42395 - chrX_40_9575001 chrX_9575001 RAL-819 3917 chrX 9577013 9577069 chrX 9577488 9577544 36 474 4.0 6.0 5.0 6.0 531 chrX 9577013 intron CG32699 - chrX 9577278 intron CG32699 - chrX 9577544 intron CG32699 - chrX_36_9575001 chrX_9575001 RAL-819 3918 chrX 9599147 9599202 chrX 9599250 9599305 42 99 8.0 11.0 9.5 4.0 158 chrX 9599147 intergenic not near genes chrX 9599226 intergenic not near genes chrX 9599305 intergenic not near genes chrX_42_9595001 chrX_9595001 RAL-819 3919 chrX 9758024 9758076 chrX 9758134 9758186 30 108 10.0 0.0 5.0 5.0 162 chrX 9758024 intergenic not near genes chrX 9758105 intergenic not near genes chrX 9758186 intergenic not near genes chrX_30_9755001 chrX_9755001 RAL-819 3920 chrX 9845361 9845361 chrX 14544906 14544909 7 4699546 66.0 33.5 49.8 0.1 4699548 chrX 9845361 intron CG32698 + chrX 12195135 intron Ten-a + chrX 14544909 intergenic not near genes chrX_7_12195001 chrX_12195001 RAL-819 3921 chrX 10138193 10138248 chrX 10145722 10145777 412 30 7527 10.5 1.5 6.0 4.3 7584 chrX 10138193 intron,intron RhoU +,CR44894 - chrX 10141985 intron,intron RhoU +,CR44894 - chrX 10145777 intron,intron RhoU +,CR44894 - chrX_30_10140001 chrX_10140001 RAL-819 3922 chrX 10167839 10167887 chrX 10168610 10168642 27 768 11.5 7.5 9.5 2.6 803 chrX 10167839 intron,intron CR44894 -,CG43902 + chrX 10168240 intron,intron CR44894 -,CG43902 + chrX 10168642 intron,intron CR44894 -,CG43902 + chrX_27_10165001 chrX_10165001 RAL-819 3923 chrX 10189588 10189590 chrX 12399702 12399704 4 2210114 23.0 39.0 31.0 0.1 2210116 chrX 10189588 intron,intron CR44894 -,CG43902 + chrX 11294646 intron CG44422 - chrX 12399704 intergenic not near genes chrX_4_11290001 chrX_11290001 RAL-819 3924 chrX 10216161 10216212 chrX 10216299 10216350 33 138 8.0 10.0 9.0 3.3 189 chrX 10216161 3` UTR,intron l(1)G0230 +,CG2962 - chrX 10216256 3` UTR,intron l(1)G0230 +,CG2962 - chrX 10216350 3` UTR,intron l(1)G0230 +,CG2962 - chrX_33_10215001 chrX_10215001 RAL-819 3925 chrX 10216824 10216842 chrX 10216930 10216948 10 103 26.5 28.0 27.2 0.4 124 chrX 10216824 3` UTR l(1)G0230 + chrX 10216886 3` UTR l(1)G0230 + chrX 10216948 3` UTR l(1)G0230 + chrX_10_10215001 chrX_10215001 RAL-819 3926 chrX 10216843 10216852 chrX 10216928 10216954 15 101 22.0 27.0 24.5 0.6 111 chrX 10216843 3` UTR l(1)G0230 + chrX 10216898 3` UTR l(1)G0230 + chrX 10216954 3` UTR l(1)G0230 + chrX_15_10215001 chrX_10215001 RAL-819 3927 chrX 10248607 10248664 chrX 10248709 10248766 20 101 9.0 9.5 9.2 2.0 159 chrX 10248607 intron Hk - chrX 10248686 intron Hk - chrX 10248766 intron Hk - chrX_20_10245001 chrX_10245001 RAL-819 3928 chrX 10267301 10267329 chrX 10276460 10276504 roo 15 9171 0.5 6.5 3.5 3.3 9203 chrX 10267301 3` UTR alpha-Man-I - chrX 10271902 intron alpha-Man-I - chrX 10276504 3` UTR alpha-Man-I - chrX_15_10270001 chrX_10270001 RAL-819 3929 chrX 10285869 10285907 chrX 10286224 10286235 21 357 8.0 8.0 8.0 2.3 366 chrX 10285869 intron alpha-Man-I - chrX 10286052 intron alpha-Man-I - chrX 10286235 intron alpha-Man-I - chrX_21_10285001 chrX_10285001 RAL-819 3930 chrX 10317529 10317581 chrX 10317632 10317684 21 102 0.5 5.0 2.8 5.5 155 chrX 10317529 intron alpha-Man-I - chrX 10317606 intron alpha-Man-I - chrX 10317684 intron alpha-Man-I - chrX_21_10315001 chrX_10315001 RAL-819 3931 chrX 10348776 10348823 chrX 10356366 10356413 springer 22 7583 18.0 9.0 13.5 1.5 7637 chrX 10348776 intergenic snoRNA:U3:9B + chrX 10352594 intergenic not near genes chrX 10356413 intergenic l(1)G0289 - chrX_22_10350001 chrX_10350001 RAL-819 3932 chrX 10369082 10369127 chrX 10369274 10369319 29 189 16.5 12.0 14.2 1.9 237 chrX 10369082 intron CG17841 + chrX 10369200 intron CG17841 + chrX 10369319 intron CG17841 + chrX_29_10365001 chrX_10365001 RAL-819 3933 chrX 10426390 10426395 chrX 10426716 10426721 4 326 30.0 11.0 20.5 0.2 331 chrX 10426390 intron CG32683 - chrX 10426556 intron CG32683 - chrX 10426721 intron CG32683 - chrX_4_10425001 chrX_10425001 RAL-819 3934 chrX 10426398 10426421 chrX 10426714 10426747 20 323 19.5 11.0 15.2 1.2 349 chrX 10426398 intron CG32683 - chrX 10426572 intron CG32683 - chrX 10426747 intron CG32683 - chrX_20_10425001 chrX_10425001 RAL-819 3935 chrX 10426422 10426444 chrX 10426713 10426770 20 317 8.5 11.0 9.8 1.9 348 chrX 10426422 intron CG32683 - chrX 10426596 intron CG32683 - chrX 10426770 intron CG32683 - chrX_20_10425001 chrX_10425001 RAL-819 3936 chrX 10525058 10525072 chrX 10532132 10532165 297 11 7087 15.0 11.0 13.0 0.8 7107 chrX 10525058 intron spri - chrX 10528612 intron spri - chrX 10532165 intron spri - chrX_11_10525001 chrX_10525001 RAL-819 3937 chrX 10550831 10550837 chrX 10552323 10552329 hobo 9 1492 21.5 12.5 17.0 0.5 1498 chrX 10550831 intron spri - chrX 10551580 intron spri - chrX 10552329 intron spri - chrX_9_10550001 chrX_10550001 RAL-819 3938 chrX 10550838 10550889 chrX 10552322 10552370 hobo 28 1489 13.0 12.5 12.8 2.0 1532 chrX 10550838 intron spri - chrX 10551604 intron spri - chrX 10552370 intron spri - chrX_28_10550001 chrX_10550001 RAL-819 3939 chrX 10641375 10641434 chrX 10641539 10641565 33 151 9.0 10.5 9.8 3.1 190 chrX 10641375 intron X11Lbeta + chrX 10641470 intron X11Lbeta + chrX 10641565 intron X11Lbeta + chrX_33_10640001 chrX_10640001 RAL-819 3940 chrX 10651605 10651646 chrX 10651746 10651787 26 141 0.0 16.5 8.2 2.8 182 chrX 10651605 intron X11Lbeta + chrX 10651696 intron X11Lbeta + chrX 10651787 intron X11Lbeta + chrX_26_10650001 chrX_10650001 RAL-819 3941 chrX 10686028 10686078 chrX 10691190 10691240 roo 32 5161 15.5 15.5 15.5 1.9 5212 chrX 10686028 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691240 intron X11Lbeta + chrX_32_10685001 chrX_10685001 RAL-819 3942 chrX 10692164 10692223 chrX 10693741 10693759 41 1567 8.5 12.5 10.5 3.6 1595 chrX 10692164 intron X11Lbeta + chrX 10692962 intron X11Lbeta + chrX 10693759 intron X11Lbeta + chrX_41_10690001 chrX_10690001 RAL-819 3943 chrX 10718581 10718636 chrX 10718682 10718724 39 95 13.5 11.0 12.2 3.0 143 chrX 10718581 intron CG32676 - chrX 10718652 intron CG32676 - chrX 10718724 intron CG32676 - chrX_39_10715001 chrX_10715001 RAL-819 3944 chrX 10719125 10719134 chrX 10719234 10719240 4 108 0.5 24.0 12.2 0.3 115 chrX 10719125 intron CG32676 - chrX 10719182 intron CG32676 - chrX 10719240 intron CG32676 - chrX_4_10715001 chrX_10715001 RAL-819 3945 chrX 10719136 10719144 chrX 10719233 10719253 7 107 0.5 24.0 12.2 0.5 117 chrX 10719136 intron CG32676 - chrX 10719194 intron CG32676 - chrX 10719253 intron CG32676 - chrX_7_10715001 chrX_10715001 RAL-819 3946 chrX 9845361 9845361 chrX 10759277 10759278 4 913916 66.0 57.5 61.8 0.1 913917 chrX 9845361 intron CG32698 + chrX 10302320 intron alpha-Man-I - chrX 10759278 intergenic not near genes chrX_4_10300001 chrX_10300001 RAL-819 3947 chrX 10772657 10772696 chrX 10772757 10772799 Tirant 28 100 12.0 6.5 9.2 2.7 142 chrX 10772657 intron CG15211 + chrX 10772728 intron CG15211 + chrX 10772799 intron CG15211 + chrX_28_10770001 chrX_10770001 RAL-819 3948 chrX 10803018 10803049 chrX 10803122 10803153 22 103 22.0 25.0 23.5 0.9 135 chrX 10803018 intron Imp - chrX 10803086 intron Imp - chrX 10803153 intron Imp - chrX_22_10800001 chrX_10800001 RAL-819 3949 chrX 5041434 5041439 chrX 10907853 10907858 6 5866419 2.0 54.0 28.0 0.2 5866424 chrX 5041434 intron CR44833 - chrX 7974646 intron sn + chrX 10907858 exon CG43901 + chrX_6_7970001 chrX_7970001 RAL-819 3950 chrX 10925492 10925532 chrX 10925581 10925636 41 99 9.5 10.0 9.8 3.8 144 chrX 10925492 exon v + chrX 10925564 3` UTR v + chrX 10925636 intergenic v + chrX_41_10925001 chrX_10925001 RAL-819 3951 chrX 10960205 10960258 chrX 10960344 10960396 27 138 9.0 7.0 8.0 3.0 191 chrX 10960205 intron Myo10A + chrX 10960300 intron Myo10A + chrX 10960396 intron Myo10A + chrX_27_10960001 chrX_10960001 RAL-819 3952 chrX 10974304 10974318 chrX 10974405 10974414 5 99 10.0 19.5 14.8 0.3 110 chrX 10974304 intron CG42339 - chrX 10974359 intron CG42339 - chrX 10974414 intron CG42339 - chrX_5_10970001 chrX_10970001 RAL-819 3953 chrX 11095977 11096024 chrX 11103104 11103151 HMS-Beagle 29 7127 15.5 24.0 19.8 1.4 7174 chrX 11095977 intergenic not near genes chrX 11099564 intergenic not near genes chrX 11103151 intron CG42249 + chrX_29_11095001 chrX_11095001 RAL-819 3954 chrX 11109417 11109417 chrX 12946234 12946235 4 1836817 50.0 48.0 49.0 0.1 1836818 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946235 3` UTR fne + chrX_4_12025001 chrX_12025001 RAL-819 3955 chrX 11165885 11165901 chrX 11166217 11166258 17 353 6.5 10.0 8.2 1.8 373 chrX 11165885 intergenic not near genes chrX 11166072 intergenic not near genes chrX 11166258 intergenic not near genes chrX_17_11165001 chrX_11165001 RAL-819 3956 chrX 11184225 11184237 chrX 11189329 11189341 flea 9 5103 27.5 11.0 19.2 0.4 5116 chrX 11184225 intergenic not near genes chrX 11186783 intergenic not near genes chrX 11189341 intergenic not near genes chrX_9_11185001 chrX_11185001 RAL-819 3957 chrX 11184238 11184281 chrX 11189326 11189371 flea 16 5098 14.5 11.0 12.8 1.2 5133 chrX 11184238 intergenic not near genes chrX 11186804 intergenic not near genes chrX 11189371 intergenic not near genes chrX_16_11185001 chrX_11185001 RAL-819 3958 chrX 11268536 11268596 chrX 11270054 11270112 hopper2 43 1513 7.0 12.0 9.5 4.1 1576 chrX 11268536 intron CG44422 - chrX 11269324 intron CG44422 - chrX 11270112 intron CG44422 - chrX_43_11265001 chrX_11265001 RAL-819 3959 chrX 11279847 11279858 chrX 11284498 11284509 9 4650 29.5 8.5 19.0 0.5 4662 chrX 11279847 intron CG44422 - chrX 11282178 intron CG44422 - chrX 11284509 intron CG44422 - chrX_9_11280001 chrX_11280001 RAL-819 3960 chrX 11279859 11279898 chrX 11284494 11284549 30 4648 9.5 7.0 8.2 3.3 4690 chrX 11279859 intron CG44422 - chrX 11282204 intron CG44422 - chrX 11284549 intron CG44422 - chrX_30_11280001 chrX_11280001 RAL-819 3961 chrX 11291662 11291723 chrX 11291769 11291794 30 99 7.5 10.5 9.0 3.0 132 chrX 11291662 intron CG44422 - chrX 11291728 intron CG44422 - chrX 11291794 intron CG44422 - chrX_30_11290001 chrX_11290001 RAL-819 3962 chrX 11312043 11312048 chrX 11319411 11319426 Stalker2 4 7374 32.0 15.0 23.5 0.2 7383 chrX 11312043 intergenic not near genes chrX 11315734 intergenic not near genes chrX 11319426 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-819 3963 chrX 11312053 11312087 chrX 11319410 11319430 Stalker2 25 7363 14.5 13.0 13.8 1.7 7377 chrX 11312053 intergenic not near genes chrX 11315742 intergenic not near genes chrX 11319430 intergenic not near genes chrX_25_11315001 chrX_11315001 RAL-819 3964 chrX 11379740 11379792 chrX 11379910 11379962 44 167 6.5 11.0 8.8 4.5 222 chrX 11379740 intron dlg1 + chrX 11379851 intron dlg1 + chrX 11379962 intron dlg1 + chrX_44_11375001 chrX_11375001 RAL-819 3965 chrX 11431608 11431621 chrX 11431720 11431730 7 112 0.0 11.5 5.8 1.0 122 chrX 11431608 3` UTR Evi5 - chrX 11431669 3` UTR Evi5 - chrX 11431730 3` UTR Evi5 - chrX_7_11430001 chrX_11430001 RAL-819 3966 chrX 11499087 11499138 chrX 11499190 11499236 31 101 15.0 17.0 16.0 1.8 149 chrX 11499087 intron Drak + chrX 11499162 intron Drak + chrX 11499236 intron Drak + chrX_31_11495001 chrX_11495001 RAL-819 3967 chrX 11535019 11535046 chrX 11541514 11541541 Burdock 20 6494 28.0 11.5 19.8 1.0 6522 chrX 11535019 intron Drak + chrX 11538280 intron Drak + chrX 11541541 intron Drak + chrX_20_11535001 chrX_11535001 RAL-819 3968 chrX 11571431 11571484 chrX 11571693 11571746 pogo 41 260 16.0 15.5 15.8 2.4 315 chrX 11571431 3` UTR Kmn1 - chrX 11571588 3` UTR Kmn1 - chrX 11571746 3` UTR Kmn1 - chrX_41_11570001 chrX_11570001 RAL-819 3969 chrX 11633394 11633446 chrX 11640473 11640525 297 40 7079 12.0 20.5 16.2 2.3 7131 chrX 11633394 intron Ptp10D + chrX 11636960 intron Ptp10D + chrX 11640525 intron Ptp10D + chrX_40_11635001 chrX_11635001 RAL-819 3970 chrX 11645083 11645093 chrX 11648278 11648288 NOF 8 3195 28.5 10.5 19.5 0.4 3205 chrX 11645083 intron Ptp10D + chrX 11646686 intron Ptp10D + chrX 11648288 intron Ptp10D + chrX_8_11645001 chrX_11645001 RAL-819 3971 chrX 11645096 11645116 chrX 11648276 11648311 NOF 10 3192 21.0 10.0 15.5 0.6 3215 chrX 11645096 intron Ptp10D + chrX 11646704 intron Ptp10D + chrX 11648311 intron Ptp10D + chrX_10_11645001 chrX_11645001 RAL-819 3972 chrX 11685945 11685961 chrX 11686050 11686066 10 105 34.0 9.5 21.8 0.4 121 chrX 11685945 intron bif + chrX 11686006 intron bif + chrX 11686066 intron bif + chrX_10_11685001 chrX_11685001 RAL-819 3973 chrX 11685962 11686003 chrX 11686048 11686108 34 101 15.5 9.5 12.5 2.5 146 chrX 11685962 intron bif + chrX 11686035 intron bif + chrX 11686108 intron bif + chrX_34_11685001 chrX_11685001 RAL-819 3974 chrX 11798995 11799020 chrX 11799106 11799130 5 111 15.5 9.5 12.5 0.4 135 chrX 11798995 intron CkIIbeta + chrX 11799062 intron CkIIbeta + chrX 11799130 intron CkIIbeta + chrX_5_11795001 chrX_11795001 RAL-819 3975 chrX 11804649 11804689 chrX 11804778 11804818 20 127 8.0 5.0 6.5 2.7 169 chrX 11804649 intron Hsc70-3 - chrX 11804734 intron Hsc70-3 - chrX 11804818 intron Hsc70-3 - chrX_20_11800001 chrX_11800001 RAL-819 3976 chrX 11839001 11839068 chrX 11839284 11839341 25 271 0.5 9.0 4.8 4.3 340 chrX 11839001 intergenic not near genes chrX 11839171 intergenic Cyp28c1 + chrX 11839341 intergenic Cyp28c1 + chrX_25_11835001 chrX_11835001 RAL-819 3977 chrX 11922340 11922381 chrX 11922498 11922534 23 157 10.5 13.0 11.8 1.8 194 chrX 11922340 exon Sclp - chrX 11922437 intron Sclp - chrX 11922534 intron Sclp - chrX_23_11920001 chrX_11920001 RAL-819 3978 chrX 12038061 12038116 chrX 12038280 12038335 46 217 10.0 15.0 12.5 3.4 274 chrX 12038061 intergenic not near genes chrX 12038198 intergenic not near genes chrX 12038335 intergenic not near genes chrX_46_12035001 chrX_12035001 RAL-819 3979 chrX 12056911 12056963 chrX 12057053 12057089 24 140 6.5 12.0 9.2 2.4 178 chrX 12056911 intron,intron CR43960 +,Ten-a + chrX 12057000 intron,intron CR43960 +,Ten-a + chrX 12057089 intron,intron CR43960 +,Ten-a + chrX_24_12055001 chrX_12055001 RAL-819 3980 chrX 12094015 12094066 chrX 12094126 12094183 26 111 10.5 11.0 10.8 2.2 168 chrX 12094015 intron,intron CR43960 +,Ten-a + chrX 12094099 intron,intron CR43960 +,Ten-a + chrX 12094183 intron,intron CR43960 +,Ten-a + chrX_26_12090001 chrX_12090001 RAL-819 3981 chrX 12168122 12168154 chrX 12173584 12173621 I-element 19 5465 13.0 8.5 10.8 1.6 5499 chrX 12168122 intron Ten-a + chrX 12170872 intron Ten-a + chrX 12173621 intron Ten-a + chrX_19_12170001 chrX_12170001 RAL-819 3982 chrX 12176719 12176766 chrX 12176812 12176855 36 98 1.0 14.0 7.5 4.2 136 chrX 12176719 intron,3` UTR Ten-a +,CG1924 - chrX 12176787 intron,3` UTR Ten-a +,CG1924 - chrX 12176855 intron,3` UTR Ten-a +,CG1924 - chrX_36_12175001 chrX_12175001 RAL-819 3983 chrX 12191572 12191583 chrX 12191685 12191696 10 113 6.0 13.0 9.5 1.0 124 chrX 12191572 intron Ten-a + chrX 12191634 intron Ten-a + chrX 12191696 intron Ten-a + chrX_10_12190001 chrX_12190001 RAL-819 3984 chrX 12202744 12202801 chrX 12202853 12202910 22 108 6.5 11.5 9.0 2.2 166 chrX 12202744 intron Ten-a + chrX 12202827 intron Ten-a + chrX 12202910 intron Ten-a + chrX_22_12200001 chrX_12200001 RAL-819 3985 chrX 12218438 12218491 chrX 12218561 12218614 24 120 5.0 12.5 8.8 2.4 176 chrX 12218438 intron Ten-a + chrX 12218526 intron Ten-a + chrX 12218614 intron Ten-a + chrX_24_12215001 chrX_12215001 RAL-819 3986 chrX 12246947 12246990 chrX 12247060 12247103 12 112 4.0 5.0 4.5 2.2 156 chrX 12246947 intron Ten-a + chrX 12247025 intron Ten-a + chrX 12247103 intron Ten-a + chrX_12_12245001 chrX_12245001 RAL-819 3987 chrX 12272819 12272865 chrX 12272922 12272969 26 103 7.5 10.0 8.8 2.7 150 chrX 12272819 intron Ten-a + chrX 12272894 intron Ten-a + chrX 12272969 intron Ten-a + chrX_26_12270001 chrX_12270001 RAL-819 3988 chrX 12350747 12350794 chrX 12350853 12350890 50 104 15.0 1.0 8.0 5.6 143 chrX 12350747 intergenic not near genes chrX 12350818 intergenic not near genes chrX 12350890 intergenic not near genes chrX_50_12350001 chrX_12350001 RAL-819 3989 chrX 12375470 12375504 chrX 12375588 12375627 27 119 9.0 5.0 7.0 3.4 157 chrX 12375470 intergenic Ir11a - chrX 12375548 intergenic Ir11a - chrX 12375627 exon Ir11a - chrX_27_12375001 chrX_12375001 RAL-819 3990 chrX 12381833 12381899 chrX 12385771 12385825 flea 13 3933 0.5 9.0 4.8 2.2 3992 chrX 12381833 intergenic not near genes chrX 12383829 intergenic not near genes chrX 12385825 intergenic not near genes chrX_13_12380001 chrX_12380001 RAL-819 3991 chrX 12435346 12435360 chrX 12435449 12435463 10 103 7.0 14.5 10.8 0.8 117 chrX 12435346 intron Pkcdelta + chrX 12435404 intron Pkcdelta + chrX 12435463 intron Pkcdelta + chrX_10_12435001 chrX_12435001 RAL-819 3992 chrX 12442067 12442098 chrX 12442172 12442183 12 105 8.5 4.5 6.5 1.6 116 chrX 12442067 intron Pkcdelta + chrX 12442125 intron Pkcdelta + chrX 12442183 intron Pkcdelta + chrX_12_12440001 chrX_12440001 RAL-819 3993 chrX 12492976 12492984 chrX 13057294 13057302 6 564318 8.5 39.5 24.0 0.2 564326 chrX 12492976 3` UTR Lsp1alpha + chrX 12775139 3` UTR CG32647 - chrX 13057302 intron rad + chrX_6_12775001 chrX_12775001 RAL-819 3994 chrX 12511300 12511351 chrX 12511407 12511460 13 108 0.0 9.0 4.5 2.4 160 chrX 12511300 intron CG2556 + chrX 12511380 intron CG2556 + chrX 12511460 intron CG2556 + chrX_13_12510001 chrX_12510001 RAL-819 3995 chrX 12533770 12533814 chrX 12533872 12533915 17 101 0.0 13.0 6.5 2.3 145 chrX 12533770 intron CG43921 - chrX 12533842 intron CG43921 - chrX 12533915 intron CG43921 - chrX_17_12530001 chrX_12530001 RAL-819 3996 chrX 12537266 12537565 chrX 12537388 12537666 17 103 0.0 0.0 0.0 17.0 400 chrX 12537266 intron CG43921 - chrX 12537466 intron CG43921 - chrX 12537666 intron CG43921 - chrX_17_12535001 chrX_12535001 RAL-819 3997 chrX 12537568 12537571 chrX 12537669 12537671 4 101 0.5 28.0 14.2 0.3 103 chrX 12537568 intron CG43921 - chrX 12537620 intron CG43921 - chrX 12537671 intron CG43921 - chrX_4_12535001 chrX_12535001 RAL-819 3998 chrX 9845361 9845361 chrX 12546496 12546496 gypsy5 6 2701135 66.0 57.0 61.5 0.1 2701135 chrX 9845361 intron CG32698 + chrX 11195928 intergenic not near genes chrX 12546496 intron CG43921 - chrX_6_11195001 chrX_11195001 RAL-819 3999 chrX 5190123 5190138 chrX 12649914 12649914 5 7459785 34.5 43.0 38.8 0.1 7459791 chrX 5190123 intron,intron CG15465 +,rg + chrX 8920018 intron,3` UTR rdgA +,CR44111 - chrX 12649914 intron Tomosyn + chrX_5_8920001 chrX_8920001 RAL-819 4000 chrX 12730395 12730417 chrX 12730497 12730519 12 102 10.0 0.5 5.2 1.9 124 chrX 12730395 intron,intron Smr -,CR43963 - chrX 12730457 intron,intron Smr -,CR43963 - chrX 12730519 intron,intron Smr -,CR43963 - chrX_12_12730001 chrX_12730001 RAL-819 4001 chrX 12752253 12752310 chrX 12752365 12752415 43 111 11.5 12.5 12.0 3.3 162 chrX 12752253 5` UTR CR44619 + chrX 12752334 5` UTR CR44619 + chrX 12752415 5` UTR CR44619 + chrX_43_12750001 chrX_12750001 RAL-819 4002 chrX 12785405 12785456 chrX 12785507 12785558 14 100 10.0 13.5 11.8 1.1 153 chrX 12785405 intergenic Pde9 -,CG32647 - chrX 12785482 intergenic Pde9 - chrX 12785558 intergenic Pde9 - chrX_14_12785001 chrX_12785001 RAL-819 4003 chrX 12837573 12837633 chrX 12837879 12837937 39 303 9.5 14.0 11.8 3.0 364 chrX 12837573 intron Pde9 - chrX 12837755 intron Pde9 - chrX 12837937 intron Pde9 - chrX_39_12835001 chrX_12835001 RAL-819 4004 chrX 12877893 12877895 chrX 12878127 12878129 6 234 0.0 20.0 10.0 0.5 236 chrX 12877893 intron Pde9 - chrX 12878011 intron Pde9 - chrX 12878129 intron Pde9 - chrX_6_12875001 chrX_12875001 RAL-819 4005 chrX 12877896 12877906 chrX 12878103 12878140 8 231 0.0 13.5 6.8 1.0 244 chrX 12877896 intron Pde9 - chrX 12878018 intron Pde9 - chrX 12878140 intron Pde9 - chrX_8_12875001 chrX_12875001 RAL-819 4006 chrX 12927313 12927360 chrX 12927414 12927461 16 100 9.5 0.0 4.8 2.8 148 chrX 12927313 intron fne + chrX 12927387 intron fne + chrX 12927461 intron fne + chrX_16_12925001 chrX_12925001 RAL-819 4007 chrX 12930575 12930607 chrX 12937714 12937746 HMS-Beagle 26 7139 6.0 22.0 14.0 1.7 7171 chrX 12930575 intron fne + chrX 12934160 intron fne + chrX 12937746 intron fne + chrX_26_12930001 chrX_12930001 RAL-819 4008 chrX 12943783 12943797 chrX 12943966 12943980 18 183 17.5 0.0 8.8 1.8 197 chrX 12943783 intron fne + chrX 12943882 intron fne + chrX 12943980 intron fne + chrX_18_12940001 chrX_12940001 RAL-819 4009 chrX 11109417 11109417 chrX 12946234 12946234 4 1836817 50.0 48.0 49.0 0.1 1836817 chrX 11109417 intron Hsp60 + chrX 12027826 exon Usp7 - chrX 12946234 3` UTR fne + chrX_4_12025001 chrX_12025001 RAL-819 4010 chrX 12946234 12946234 chrX 18572524 18572526 5 5626291 43.0 50.5 46.8 0.1 5626292 chrX 12946234 3` UTR fne + chrX 15759380 intron Graf - chrX 18572526 intergenic not near genes chrX_5_15755001 chrX_15755001 RAL-819 4011 chrX 12953900 12953904 chrX 12954033 12954059 5 151 10.0 4.5 7.2 0.6 159 chrX 12953900 intron hec - chrX 12953980 intron hec - chrX 12954059 intron hec - chrX_5_12950001 chrX_12950001 RAL-819 4012 chrX 12953908 12953927 chrX 12954030 12954089 9 159 5.5 4.5 5.0 1.5 181 chrX 12953908 intron hec - chrX 12953998 intron hec - chrX 12954089 intron hec - chrX_9_12950001 chrX_12950001 RAL-819 4013 chrX 12971662 12971696 chrX 12971764 12971783 24 95 19.5 12.0 15.8 1.4 121 chrX 12971662 intron,exon CR43636 -,CG15721 + chrX 12971722 intron,exon CR43636 -,CG15721 + chrX 12971783 intron,exon CR43636 -,CG15721 + chrX_24_12970001 chrX_12970001 RAL-819 4014 chrX 12977043 12977063 chrX 12977144 12977164 18 100 0.0 22.5 11.2 1.5 121 chrX 12977043 intergenic not near genes chrX 12977104 intergenic not near genes chrX 12977164 intergenic not near genes chrX_18_12975001 chrX_12975001 RAL-819 4015 chrX 13146570 13146630 chrX 13146683 13146743 32 112 7.5 8.5 8.0 3.6 173 chrX 13146570 intron CG32645 + chrX 13146656 intron CG32645 + chrX 13146743 intron CG32645 + chrX_32_13145001 chrX_13145001 RAL-819 4016 chrX 13172324 13172383 chrX 13172425 13172484 51 98 10.5 12.0 11.2 4.2 160 chrX 13172324 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172484 intron CG34411 - chrX_51_13170001 chrX_13170001 RAL-819 4017 chrX 13272153 13272181 chrX 13272255 13272282 21 100 12.5 14.5 13.5 1.4 129 chrX 13272153 intron HDAC4 - chrX 13272218 intron HDAC4 - chrX 13272282 intron HDAC4 - chrX_21_13270001 chrX_13270001 RAL-819 4018 chrX 13273614 13273660 chrX 13273727 13273778 41 117 10.0 15.0 12.5 3.0 164 chrX 13273614 intron HDAC4 - chrX 13273696 intron HDAC4 - chrX 13273778 intron HDAC4 - chrX_41_13270001 chrX_13270001 RAL-819 4019 chrX 13329305 13329318 chrX 13329424 13329437 13 119 7.5 3.5 5.5 2.0 132 chrX 13329305 intergenic IP3K2 + chrX 13329371 intergenic IP3K2 +,Jafrac1 + chrX 13329437 intergenic IP3K2 +,Jafrac1 + chrX_13_13325001 chrX_13325001 RAL-819 4020 chrX 13354928 13354949 chrX 13355030 13355051 13 101 13.5 0.0 6.8 1.7 123 chrX 13354928 intergenic not near genes chrX 13354990 intergenic not near genes chrX 13355051 intergenic not near genes chrX_13_13350001 chrX_13350001 RAL-819 4021 chrX 13374821 13374846 chrX 13374917 13374939 15 101 15.0 5.5 10.2 1.3 118 chrX 13374821 intron CG1640 + chrX 13374880 intron CG1640 + chrX 13374939 intron CG1640 + chrX_15_13370001 chrX_13370001 RAL-819 4022 chrX 13374847 13374868 chrX 13374915 13374973 8 99 8.5 5.0 6.8 1.0 126 chrX 13374847 intron CG1640 + chrX 13374910 intron CG1640 + chrX 13374973 intron CG1640 + chrX_8_13370001 chrX_13370001 RAL-819 4023 chrX 13401461 13401512 chrX 13401838 13401889 jockey 32 376 5.5 9.5 7.5 3.8 428 chrX 13401461 intergenic CG1673 +,CG12725 - chrX 13401675 intergenic CG12725 -,CG1673 + chrX 13401889 3` UTR CG12725 - chrX_32_13400001 chrX_13400001 RAL-819 4024 chrX 13416655 13416714 chrX 13416772 13416831 35 107 11.0 8.5 9.8 3.2 176 chrX 13416655 exon Set2 + chrX 13416743 exon Set2 + chrX 13416831 exon Set2 + chrX_35_13415001 chrX_13415001 RAL-819 4025 chrX 13421449 13421465 chrX 13421549 13421574 10 104 0.0 12.0 6.0 1.4 125 chrX 13421449 intergenic Set2 + chrX 13421512 intergenic Set2 + chrX 13421574 intergenic not near genes chrX_10_13420001 chrX_13420001 RAL-819 4026 chrX 13429470 13429488 chrX 13430639 13430662 jockey 12 1172 0.0 22.5 11.2 1.0 1192 chrX 13429470 intergenic not near genes chrX 13430066 intergenic not near genes chrX 13430662 intergenic not near genes chrX_12_13430001 chrX_13430001 RAL-819 4027 chrX 13442119 13442170 chrX 13442235 13442286 28 114 0.0 8.5 4.2 5.4 167 chrX 13442119 intergenic not near genes chrX 13442202 intergenic not near genes chrX 13442286 intergenic not near genes chrX_28_13440001 chrX_13440001 RAL-819 4028 chrX 13443405 13443407 chrX 13443489 13443509 6 90 30.0 21.5 25.8 0.2 104 chrX 13443405 intergenic not near genes chrX 13443457 intergenic not near genes chrX 13443509 intergenic not near genes chrX_6_13440001 chrX_13440001 RAL-819 4029 chrX 13443408 13443420 chrX 13443488 13443517 21 94 28.5 20.5 24.5 0.8 109 chrX 13443408 intergenic not near genes chrX 13443462 intergenic not near genes chrX 13443517 intergenic not near genes chrX_21_13440001 chrX_13440001 RAL-819 4030 chrX 13463623 13463676 chrX 13469225 13469278 mdg3 45 5601 14.0 9.0 11.5 3.6 5655 chrX 13463623 intron Neto + chrX 13466450 intron Neto + chrX 13469278 intron Neto + chrX_45_13465001 chrX_13465001 RAL-819 4031 chrX 13574921 13574940 chrX 13575036 13575036 8 113 22.0 22.5 22.2 0.3 115 chrX 13574921 intron Tango13 + chrX 13574978 intron Tango13 + chrX 13575036 intron Tango13 + chrX_8_13570001 chrX_13570001 RAL-819 4032 chrX 13577730 13577781 chrX 13577990 13578042 27 259 10.5 4.5 7.5 3.2 312 chrX 13577730 intron Tango13 + chrX 13577886 intron Tango13 + chrX 13578042 intron Tango13 + chrX_27_13575001 chrX_13575001 RAL-819 4033 chrX 13593197 13593225 chrX 13593301 13593330 12 105 5.0 10.5 7.8 1.4 133 chrX 13593197 3` UTR Tango13 + chrX 13593264 intergenic Tango13 +,up - chrX 13593330 intergenic Tango13 +,up - chrX_12_13590001 chrX_13590001 RAL-819 4034 chrX 13770333 13770362 chrX 13770434 13770463 19 100 13.0 14.0 13.5 1.3 130 chrX 13770333 intron rdgB + chrX 13770398 intron rdgB + chrX 13770463 intron rdgB + chrX_19_13770001 chrX_13770001 RAL-819 4035 chrX 13821448 13821477 chrX 13821549 13821578 14 99 17.0 11.0 14.0 0.9 130 chrX 13821448 intron Clic - chrX 13821513 intron Clic - chrX 13821578 intron Clic - chrX_14_13820001 chrX_13820001 RAL-819 4036 chrX 13843365 13843410 chrX 13843543 13843561 37 174 7.0 10.5 8.8 3.8 196 chrX 13843365 intron AMPdeam - chrX 13843463 intron AMPdeam - chrX 13843561 intron AMPdeam - chrX_37_13840001 chrX_13840001 RAL-819 4037 chrX 13908793 13908804 chrX 13908875 13908895 5 86 16.0 19.0 17.5 0.3 102 chrX 13908793 intron mamo - chrX 13908844 intron mamo - chrX 13908895 intron mamo - chrX_5_13905001 chrX_13905001 RAL-819 4038 chrX 13915403 13915458 chrX 13915560 13915613 19 156 6.5 9.0 7.8 2.2 210 chrX 13915403 intron mamo - chrX 13915508 intron mamo - chrX 13915613 intron mamo - chrX_19_13915001 chrX_13915001 RAL-819 4039 chrX 13934275 13934317 chrX 13934383 13934425 25 107 8.0 18.5 13.2 1.8 150 chrX 13934275 intron mamo - chrX 13934350 intron mamo - chrX 13934425 intron mamo - chrX_25_13930001 chrX_13930001 RAL-819 4040 chrX 13935495 13935527 chrX 13935599 13935635 28 106 18.5 21.5 20.0 1.3 140 chrX 13935495 intron mamo - chrX 13935565 intron mamo - chrX 13935635 intron mamo - chrX_28_13935001 chrX_13935001 RAL-819 4041 chrX 13937956 13938010 chrX 13941251 13941271 I-element 31 3293 9.5 6.5 8.0 3.4 3315 chrX 13937956 intron mamo - chrX 13939614 intron mamo - chrX 13941271 intron mamo - chrX_31_13935001 chrX_13935001 RAL-819 4042 chrX 13943275 13943290 chrX 13943391 13943406 14 115 0.0 25.0 12.5 1.0 131 chrX 13943275 intron mamo - chrX 13943340 intron mamo - chrX 13943406 intron mamo - chrX_14_13940001 chrX_13940001 RAL-819 4043 chrX 13943291 13943301 chrX 13943364 13943411 12 107 0.0 14.0 7.0 1.5 120 chrX 13943291 intron mamo - chrX 13943351 intron mamo - chrX 13943411 intron mamo - chrX_12_13940001 chrX_13940001 RAL-819 4044 chrX 13975878 13975904 chrX 13975964 13976006 20 100 0.0 17.0 8.5 2.1 128 chrX 13975878 intron mamo - chrX 13975942 intron mamo - chrX 13976006 intron mamo - chrX_20_13975001 chrX_13975001 RAL-819 4045 chrX 14104998 14105052 chrX 14114174 14114228 roo 36 9173 12.0 9.0 10.5 3.1 9230 chrX 14104998 intergenic not near genes chrX 14109613 intergenic not near genes chrX 14114228 5` UTR CR44657 + chrX_36_14105001 chrX_14105001 RAL-819 4046 chrX 14130651 14130707 chrX 14130761 14130769 22 83 10.5 8.0 9.2 2.2 118 chrX 14130651 intergenic not near genes chrX 14130710 intergenic not near genes chrX 14130769 intergenic not near genes chrX_22_14130001 chrX_14130001 RAL-819 4047 chrX 14157570 14157594 chrX 14163252 14163276 297 12 5682 22.5 14.5 18.5 0.6 5706 chrX 14157570 intergenic not near genes chrX 14160423 intergenic not near genes chrX 14163276 intergenic not near genes chrX_12_14160001 chrX_14160001 RAL-819 4048 chrX 14167379 14167436 chrX 14167499 14167556 37 118 4.0 5.5 4.8 6.4 177 chrX 14167379 intergenic not near genes chrX 14167468 intergenic not near genes chrX 14167556 intergenic not near genes chrX_37_14165001 chrX_14165001 RAL-819 4049 chrX 14182581 14182582 chrX 14182669 14182675 4 90 5.5 16.5 11.0 0.3 94 chrX 14182581 exon CG11584 + chrX 14182628 exon CG11584 + chrX 14182675 exon CG11584 + chrX_4_14180001 chrX_14180001 RAL-819 4050 chrX 14209454 14209487 chrX 14209555 14209603 24 113 12.5 9.0 10.8 2.0 149 chrX 14209454 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209528 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209603 intron,intron l(1)G0007 +,l(1)G0469 - chrX_24_14205001 chrX_14205001 RAL-819 4051 chrX 14216776 14216800 chrX 14216886 14216910 8 110 12.5 7.0 9.8 0.7 134 chrX 14216776 intron l(1)G0007 + chrX 14216843 intron l(1)G0007 + chrX 14216910 intron l(1)G0007 + chrX_8_14215001 chrX_14215001 RAL-819 4052 chrX 14333262 14333298 chrX 14333369 14333395 19 104 2.0 8.5 5.2 3.1 133 chrX 14333262 intron dpr8 + chrX 14333328 intron dpr8 + chrX 14333395 intron dpr8 + chrX_19_14330001 chrX_14330001 RAL-819 4053 chrX 14333301 14333315 chrX 14333368 14333409 11 94 2.0 8.5 5.2 1.8 108 chrX 14333301 intron dpr8 + chrX 14333355 intron dpr8 + chrX 14333409 intron dpr8 + chrX_11_14330001 chrX_14330001 RAL-819 4054 chrX 14340280 14340303 chrX 14340381 14340412 14 111 8.0 4.5 6.2 1.9 132 chrX 14340280 intron dpr8 + chrX 14340346 intron dpr8 + chrX 14340412 intron dpr8 + chrX_14_14340001 chrX_14340001 RAL-819 4055 chrX 14381390 14381410 chrX 14381569 14381589 17 179 10.0 4.5 7.2 2.1 199 chrX 14381390 intron,3` UTR dpr8 +,betaNACtes4 + chrX 14381490 intron dpr8 + chrX 14381589 intron dpr8 + chrX_17_14380001 chrX_14380001 RAL-819 4056 chrX 14401528 14401571 chrX 14401662 14401704 14 133 10.5 8.0 9.2 1.4 176 chrX 14401528 intron dpr8 + chrX 14401616 intron dpr8 + chrX 14401704 intron dpr8 + chrX_14_14400001 chrX_14400001 RAL-819 4057 chrX 14416282 14416335 chrX 14421075 14421122 F-element 19 4792 6.5 10.0 8.2 2.1 4840 chrX 14416282 intron dpr8 + chrX 14418702 intron dpr8 + chrX 14421122 intron dpr8 + chrX_19_14415001 chrX_14415001 RAL-819 4058 chrX 14589685 14589689 chrX 14589946 14589955 pogo 7 265 19.0 1.0 10.0 0.6 270 chrX 14589685 intron CG9413 - chrX 14589820 intron CG9413 - chrX 14589955 intron CG9413 - chrX_7_14585001 chrX_14585001 RAL-819 4059 chrX 14589701 14589706 chrX 14589934 14589957 pogo 4 248 9.5 1.0 5.2 0.6 256 chrX 14589701 intron CG9413 - chrX 14589829 intron CG9413 - chrX 14589957 intron CG9413 - chrX_4_14585001 chrX_14585001 RAL-819 4060 chrX 14597725 14597732 chrX 14597818 14597823 5 98 0.0 13.5 6.8 0.6 98 chrX 14597725 intron CG9413 - chrX 14597774 intron CG9413 - chrX 14597823 intron CG9413 - chrX_5_14595001 chrX_14595001 RAL-819 4061 chrX 14597733 14597752 chrX 14597817 14597837 15 95 0.0 13.5 6.8 1.9 104 chrX 14597733 intron CG9413 - chrX 14597785 intron CG9413 - chrX 14597837 intron CG9413 - chrX_15_14595001 chrX_14595001 RAL-819 4062 chrX 14636440 14636446 chrX 14641906 14641912 I-element 4 5466 29.0 10.5 19.8 0.2 5472 chrX 14636440 intron NetA - chrX 14639176 intron NetA - chrX 14641912 intron NetA - chrX_4_14635001 chrX_14635001 RAL-819 4063 chrX 14636449 14636457 chrX 14641904 14641923 I-element 7 5463 25.5 10.0 17.8 0.4 5474 chrX 14636449 intron NetA - chrX 14639186 intron NetA - chrX 14641923 intron NetA - chrX_7_14635001 chrX_14635001 RAL-819 4064 chrX 14636458 14636492 chrX 14641903 14641917 I-element 19 5459 14.5 10.0 12.2 1.4 5459 chrX 14636458 intron NetA - chrX 14639188 intron NetA - chrX 14641917 intron NetA - chrX_19_14635001 chrX_14635001 RAL-819 4065 chrX 14658143 14658173 chrX 14658249 14658279 20 105 0.0 9.0 4.5 3.6 136 chrX 14658143 intergenic not near genes chrX 14658211 intergenic not near genes chrX 14658279 intergenic not near genes chrX_20_14655001 chrX_14655001 RAL-819 4066 chrX 14714024 14714064 chrX 14714126 14714171 28 106 13.5 10.0 11.8 2.2 147 chrX 14714024 intron NetB - chrX 14714098 intron NetB - chrX 14714171 intron NetB - chrX_28_14710001 chrX_14710001 RAL-819 4067 chrX 14778011 14778019 chrX 14782833 14782841 Doc 10 4821 29.0 18.5 23.8 0.4 4830 chrX 14778011 intergenic CG5347 + chrX 14780426 intergenic not near genes chrX 14782841 intergenic Ag5r2 - chrX_10_14780001 chrX_14780001 RAL-819 4068 chrX 14778021 14778053 chrX 14782832 14782875 Doc 17 4821 19.5 18.5 19.0 0.8 4854 chrX 14778021 intergenic CG5347 + chrX 14780448 intergenic not near genes chrX 14782875 intergenic Ag5r2 - chrX_17_14780001 chrX_14780001 RAL-819 4069 chrX 14806732 14806776 chrX 14806845 14806889 28 112 12.0 0.0 6.0 4.0 157 chrX 14806732 intron rut - chrX 14806810 intron rut - chrX 14806889 intron rut - chrX_28_14805001 chrX_14805001 RAL-819 4070 chrX 14813711 14813767 chrX 14813814 14813870 34 101 10.0 7.0 8.5 3.6 159 chrX 14813711 intron rut - chrX 14813790 intron rut - chrX 14813870 intron rut - chrX_34_14810001 chrX_14810001 RAL-819 4071 chrX 14818738 14818797 chrX 14823967 14824011 copia 28 5222 7.5 10.0 8.8 2.9 5273 chrX 14818738 intron rut - chrX 14821374 intron rut - chrX 14824011 intron rut - chrX_28_14820001 chrX_14820001 RAL-819 4072 chrX 14863160 14863218 chrX 14863271 14863328 31 110 9.5 7.0 8.2 3.4 168 chrX 14863160 intron,3` UTR Flo2 +,CG9518 - chrX 14863244 intron,3` UTR Flo2 +,CG9518 - chrX 14863328 intron,3` UTR Flo2 +,CG9518 - chrX_31_14860001 chrX_14860001 RAL-819 4073 chrX 14875028 14875063 chrX 14875136 14875171 5 106 0.0 8.0 4.0 1.0 143 chrX 14875028 intron Flo2 + chrX 14875100 intron Flo2 + chrX 14875171 intron Flo2 + chrX_5_14875001 chrX_14875001 RAL-819 4074 chrX 14883570 14883615 chrX 14883671 14883716 21 99 12.0 0.0 6.0 3.0 146 chrX 14883570 intron Flo2 + chrX 14883643 intron Flo2 + chrX 14883716 intron Flo2 + chrX_21_14880001 chrX_14880001 RAL-819 4075 chrX 14888926 14888980 chrX 14889037 14889091 21 110 6.5 8.5 7.5 2.5 165 chrX 14888926 intron,intron Flo2 +,CG9514 - chrX 14889008 intron,intron Flo2 +,CG9514 - chrX 14889091 intron,intron Flo2 +,CG9514 - chrX_21_14885001 chrX_14885001 RAL-819 4076 chrX 14936837 14936890 chrX 14946119 14946172 roo 34 9281 11.0 9.0 10.0 3.1 9335 chrX 14936837 intron pdgy - chrX 14941504 intron pdgy - chrX 14946172 intron pdgy - chrX_34_14940001 chrX_14940001 RAL-819 4077 chrX 14981686 14981739 chrX 14981785 14981843 11 103 6.5 5.0 5.8 1.6 157 chrX 14981686 intron eag + chrX 14981764 intron eag + chrX 14981843 intron eag + chrX_11_14980001 chrX_14980001 RAL-819 4078 chrX 15059148 15059205 chrX 15059279 15059336 14 130 5.0 7.5 6.2 1.9 188 chrX 15059148 exon hiw - chrX 15059242 intron hiw - chrX 15059336 intron hiw - chrX_14_15055001 chrX_15055001 RAL-819 4079 chrX 15198402 15198404 chrX 15198504 15198506 4 102 23.0 0.0 11.5 0.3 104 chrX 15198402 intergenic not near genes chrX 15198454 intergenic not near genes chrX 15198506 intergenic not near genes chrX_4_15195001 chrX_15195001 RAL-819 4080 chrX 15198405 15198445 chrX 15198502 15198507 4 91 12.0 0.0 6.0 0.6 102 chrX 15198405 intergenic not near genes chrX 15198456 intergenic not near genes chrX 15198507 intergenic not near genes chrX_4_15195001 chrX_15195001 RAL-819 4081 chrX 15248236 15248292 chrX 15248337 15248393 33 98 9.0 10.0 9.5 3.1 157 chrX 15248236 intergenic not near genes chrX 15248314 intergenic not near genes chrX 15248393 intergenic not near genes chrX_33_15245001 chrX_15245001 RAL-819 4082 chrX 15273686 15273708 chrX 15274873 15274900 1360 8 1184 24.5 13.5 19.0 0.4 1214 chrX 15273686 intergenic not near genes chrX 15274293 intergenic not near genes chrX 15274900 intergenic not near genes chrX_8_15270001 chrX_15270001 RAL-819 4083 chrX 15273722 15273737 chrX 15274868 15274920 1360 12 1175 14.0 11.0 12.5 0.9 1198 chrX 15273722 intergenic not near genes chrX 15274321 intergenic not near genes chrX 15274920 intergenic not near genes chrX_12_15270001 chrX_15270001 RAL-819 4084 chrX 15326708 15326712 chrX 15326931 15326935 I-element 4 223 4.5 11.0 7.8 0.5 227 chrX 15326708 3` UTR Top1 + chrX 15326822 3` UTR Top1 + chrX 15326935 3` UTR Top1 + chrX_4_15325001 chrX_15325001 RAL-819 4085 chrX 15358281 15358337 chrX 15358394 15358442 33 112 4.5 8.0 6.2 4.6 161 chrX 15358281 intron acj6 - chrX 15358362 intron acj6 - chrX 15358442 intron acj6 - chrX_33_15355001 chrX_15355001 RAL-819 4086 chrX 15369803 15369861 chrX 15369911 15369944 25 106 8.5 14.5 11.5 2.0 141 chrX 15369803 intron acj6 - chrX 15369874 intron acj6 - chrX 15369944 intron acj6 - chrX_25_15365001 chrX_15365001 RAL-819 4087 chrX 15408567 15408570 chrX 20494923 20494976 4 5086390 36.5 24.0 30.2 0.1 5086409 chrX 15408567 intron Cngl - chrX 17951772 intron Sh - chrX 20494976 intron RhoGAP19D - chrX_4_17950001 chrX_17950001 RAL-819 4088 chrX 15413038 15413050 chrX 15417357 15417377 Juan 9 4325 31.0 15.5 23.2 0.4 4339 chrX 15413038 intron Cngl - chrX 15415208 intron Cngl - chrX 15417377 intron Cngl - chrX_9_15415001 chrX_15415001 RAL-819 4089 chrX 15413052 15413080 chrX 15417354 15417382 Juan 26 4318 18.0 14.0 16.0 1.5 4330 chrX 15413052 intron Cngl - chrX 15415217 intron Cngl - chrX 15417382 intron Cngl - chrX_26_15415001 chrX_15415001 RAL-819 4090 chrX 15435687 15435698 chrX 15436139 15436156 rover 15 454 18.5 30.0 24.2 0.6 469 chrX 15435687 intron Cngl - chrX 15435922 intron Cngl - chrX 15436156 intron Cngl - chrX_15_15435001 chrX_15435001 RAL-819 4091 chrX 15435701 15435702 chrX 15436109 15436155 rover 5 429 16.5 22.0 19.2 0.2 454 chrX 15435701 intron Cngl - chrX 15435928 intron Cngl - chrX 15436155 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-819 4092 chrX 15438964 15439015 chrX 15439246 15439297 26 282 10.0 7.5 8.8 2.7 333 chrX 15438964 intron Cngl - chrX 15439130 intron Cngl - chrX 15439297 intron Cngl - chrX_26_15435001 chrX_15435001 RAL-819 4093 chrX 15443112 15443123 chrX 15443216 15443227 9 103 4.0 0.0 2.0 3.0 115 chrX 15443112 intergenic not near genes chrX 15443170 intergenic not near genes chrX 15443227 intergenic not near genes chrX_9_15440001 chrX_15440001 RAL-819 4094 chrX 15519772 15519831 chrX 15519875 15519928 36 101 5.5 8.0 6.8 4.6 156 chrX 15519772 intron Ac13E - chrX 15519850 intron Ac13E - chrX 15519928 exon Ac13E - chrX_36_15515001 chrX_15515001 RAL-819 4095 chrX 15565609 15565668 chrX 15565720 15565779 31 110 9.0 7.0 8.0 3.4 170 chrX 15565609 intergenic not near genes chrX 15565694 intergenic not near genes chrX 15565779 intergenic not near genes chrX_31_15565001 chrX_15565001 RAL-819 4096 chrX 15678010 15678066 chrX 15678112 15678167 43 100 6.0 7.5 6.8 5.5 157 chrX 15678010 intergenic CG12708 + chrX 15678088 intergenic CG12708 + chrX 15678167 intergenic CG12708 + chrX_43_15675001 chrX_15675001 RAL-819 4097 chrX 15681370 15681428 chrX 15681477 15681499 24 104 6.5 4.5 5.5 3.7 129 chrX 15681370 intergenic not near genes chrX 15681434 intergenic not near genes chrX 15681499 intergenic not near genes chrX_24_15680001 chrX_15680001 RAL-819 4098 chrX 15898415 15898458 chrX 15898594 15898622 15 176 8.5 4.5 6.5 2.0 207 chrX 15898415 intron shi + chrX 15898518 intron shi + chrX 15898622 intron shi + chrX_15_15895001 chrX_15895001 RAL-819 4099 chrX 15953627 15953668 chrX 15953748 15953789 21 119 11.0 11.0 11.0 1.8 162 chrX 15953627 intron mmd - chrX 15953708 intron mmd - chrX 15953789 intron mmd - chrX_21_15950001 chrX_15950001 RAL-819 4100 chrX 15959519 15959565 chrX 15959629 15959678 10 111 4.0 3.0 3.5 2.2 159 chrX 15959519 intron mmd - chrX 15959598 intron mmd - chrX 15959678 intron mmd - chrX_10_15955001 chrX_15955001 RAL-819 4101 chrX 16074112 16074125 chrX 16074473 16074477 5 359 1.0 1.0 1.0 2.5 365 chrX 16074112 intergenic not near genes chrX 16074294 intergenic Tob - chrX 16074477 intergenic Tob - chrX_5_16070001 chrX_16070001 RAL-819 4102 chrX 16074127 16074163 chrX 16074469 16074523 11 359 1.0 1.0 1.0 5.5 396 chrX 16074127 intergenic not near genes chrX 16074325 intergenic Tob - chrX 16074523 intergenic Tob - chrX_11_16070001 chrX_16070001 RAL-819 4103 chrX 16124330 16124335 chrX 16124433 16124437 4 103 28.0 53.0 40.5 0.1 107 chrX 16124330 intron disco-r - chrX 16124384 intron disco-r - chrX 16124437 intron disco-r - chrX_4_16120001 chrX_16120001 RAL-819 4104 chrX 16295502 16295536 chrX 16295610 16295615 20 106 11.0 0.0 5.5 3.1 113 chrX 16295502 intron CG9911 - chrX 16295558 intron CG9911 - chrX 16295615 intron CG9911 - chrX_20_16295001 chrX_16295001 RAL-819 4105 chrX 16329404 16329449 chrX 16329508 16329546 16 102 0.0 10.5 5.2 2.6 142 chrX 16329404 intron CG9919 - chrX 16329475 intron CG9919 - chrX 16329546 exon CG9919 - chrX_16_16325001 chrX_16325001 RAL-819 4106 chrX 16340642 16340697 chrX 16349822 16349879 roo 17 9180 0.0 9.5 4.8 2.9 9237 chrX 16340642 intergenic Dsp1 + chrX 16345260 intergenic not near genes chrX 16349879 intergenic sl + chrX_17_16345001 chrX_16345001 RAL-819 4107 chrX 16355251 16355302 chrX 16355438 16355489 16 185 10.0 7.0 8.5 1.7 238 chrX 16355251 3` UTR sl + chrX 16355370 3` UTR sl + chrX 16355489 3` UTR sl + chrX_16_16355001 chrX_16355001 RAL-819 4108 chrX 16437587 16437631 chrX 16437699 16437721 18 111 5.0 4.5 4.8 3.1 134 chrX 16437587 3` UTR,3` UTR hang +,CG9947 - chrX 16437654 3` UTR,3` UTR hang +,CG9947 - chrX 16437721 3` UTR,3` UTR hang +,CG9947 - chrX_18_16435001 chrX_16435001 RAL-819 4109 chrX 16492620 16492672 chrX 16498222 16498268 mdg3 34 5601 11.0 13.5 12.2 2.6 5648 chrX 16492620 intron para - chrX 16495444 intron para - chrX 16498268 intron para - chrX_34_16495001 chrX_16495001 RAL-819 4110 chrX 16623461 16623515 chrX 16623572 16623584 17 103 14.0 1.0 7.5 2.0 123 chrX 16623461 intergenic not near genes chrX 16623522 intergenic Rok - chrX 16623584 intergenic Rok - chrX_17_16620001 chrX_16620001 RAL-819 4111 chrX 16689596 16689655 chrX 16689707 16689715 51 100 10.0 13.5 11.8 4.0 119 chrX 16689596 intron Sep4 - chrX 16689656 intron Sep4 - chrX 16689715 intron Sep4 - chrX_51_16685001 chrX_16685001 RAL-819 4112 chrX 16782569 16782587 chrX 16782665 16782674 11 98 16.5 12.5 14.5 0.7 105 chrX 16782569 intron if - chrX 16782622 intron if - chrX 16782674 intron if - chrX_11_16780001 chrX_16780001 RAL-819 4113 chrX 16782591 16782606 chrX 16782664 16782666 19 85 9.5 12.5 11.0 1.6 75 chrX 16782591 intron if - chrX 16782628 intron if - chrX 16782666 intron if - chrX_19_16780001 chrX_16780001 RAL-819 4114 chrX 16821210 16821265 chrX 16821315 16821365 38 104 9.5 8.5 9.0 3.8 155 chrX 16821210 intron CG4829 + chrX 16821288 intron CG4829 + chrX 16821365 intron CG4829 + chrX_38_16820001 chrX_16820001 RAL-819 4115 chrX 16870055 16870093 chrX 16870162 16870185 18 106 7.0 11.5 9.2 1.8 130 chrX 16870055 intron CG13003 - chrX 16870120 intron CG13003 - chrX 16870185 intron CG13003 - chrX_18_16870001 chrX_16870001 RAL-819 4116 chrX 16880145 16880161 chrX 16880261 16880277 14 115 16.0 25.5 20.8 0.6 132 chrX 16880145 intergenic not near genes chrX 16880211 intergenic not near genes chrX 16880277 intergenic not near genes chrX_14_16880001 chrX_16880001 RAL-819 4117 chrX 16891338 16891357 chrX 16891450 16891469 5 112 8.5 17.0 12.8 0.4 131 chrX 16891338 intergenic not near genes chrX 16891404 intergenic not near genes chrX 16891469 intergenic not near genes chrX_5_16890001 chrX_16890001 RAL-819 4118 chrX 16936003 16936030 chrX 16936446 16936473 jockey 13 443 7.0 16.0 11.5 1.0 470 chrX 16936003 intron CG4928 + chrX 16936238 intron CG4928 + chrX 16936473 intron CG4928 + chrX_13_16935001 chrX_16935001 RAL-819 4119 chrX 16983076 16983076 chrX 19404963 19404965 4 2421888 21.5 43.0 32.2 0.1 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_4_18190001 chrX_18190001 RAL-819 4120 chrX 1053117 1053120 chrX 16983077 16983077 4 15929959 51.5 19.0 35.2 0.1 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-819 4121 chrX 17011700 17011997 chrX 17011853 17012089 63 121 12.5 9.5 11.0 5.2 389 chrX 17011700 intron CG45002 - chrX 17011894 intron CG45002 - chrX 17012089 intron CG45002 - chrX_63_17010001 chrX_17010001 RAL-819 4122 chrX 17111207 17111261 chrX 17111354 17111408 30 146 2.0 6.0 4.0 6.0 201 chrX 17111207 intron CG5004 + chrX 17111308 intron CG5004 + chrX 17111408 intron CG5004 + chrX_30_17110001 chrX_17110001 RAL-819 4123 chrX 17112248 17112251 chrX 17112354 17112358 5 107 0.0 29.0 14.5 0.3 110 chrX 17112248 intron CG5004 + chrX 17112303 intron CG5004 + chrX 17112358 intron CG5004 + chrX_5_17110001 chrX_17110001 RAL-819 4124 chrX 17195180 17195221 chrX 17200291 17200332 flea 20 5109 13.5 13.5 13.5 1.4 5152 chrX 17195180 3` UTR baz + chrX 17197756 3` UTR baz + chrX 17200332 3` UTR baz + chrX_20_17195001 chrX_17195001 RAL-819 4125 chrX 17195222 17195228 chrX 17200289 17200339 flea 10 5105 11.5 12.0 11.8 0.8 5117 chrX 17195222 3` UTR baz + chrX 17197780 3` UTR baz + chrX 17200339 3` UTR baz + chrX_10_17195001 chrX_17195001 RAL-819 4126 chrX 17205823 17205859 chrX 17205938 17205974 28 114 11.0 18.5 14.8 1.8 151 chrX 17205823 intergenic not near genes chrX 17205898 intergenic not near genes chrX 17205974 intergenic CG32564 + chrX_28_17205001 chrX_17205001 RAL-819 4127 chrX 17229931 17229966 chrX 17230059 17230084 9 127 7.5 7.5 7.5 1.1 153 chrX 17229931 intergenic CG10597 - chrX 17230008 intergenic CG10597 - chrX 17230084 intergenic CG10597 - chrX_9_17230001 chrX_17230001 RAL-819 4128 chrX 17230463 17230483 chrX 17230589 17230591 4 118 22.0 14.0 18.0 0.2 128 chrX 17230463 exon CG10597 - chrX 17230527 exon CG10597 - chrX 17230591 exon CG10597 - chrX_4_17230001 chrX_17230001 RAL-819 4129 chrX 17230491 17230500 chrX 17230563 17230565 6 80 14.5 7.0 10.8 0.5 74 chrX 17230491 exon CG10597 - chrX 17230528 exon CG10597 - chrX 17230565 exon CG10597 - chrX_6_17230001 chrX_17230001 RAL-819 4130 chrX 17237511 17237524 chrX 17237620 17237633 8 109 17.0 13.0 15.0 0.5 122 chrX 17237511 intron f + chrX 17237572 intron f + chrX 17237633 intron f + chrX_8_17235001 chrX_17235001 RAL-819 4131 chrX 17241003 17241014 chrX 17241097 17241106 10 101 18.0 10.0 14.0 0.7 103 chrX 17241003 intron,3` UTR f +,CG8915 - chrX 17241054 intron,3` UTR f +,CG8915 - chrX 17241106 intron,3` UTR f +,CG8915 - chrX_10_17240001 chrX_17240001 RAL-819 4132 chrX 17316345 17316374 chrX 17316454 17316483 19 107 15.5 0.0 7.8 2.2 138 chrX 17316345 intron B-H2 + chrX 17316414 intron B-H2 + chrX 17316483 intron B-H2 + chrX_19_17315001 chrX_17315001 RAL-819 4133 chrX 17316376 17316393 chrX 17316450 17316489 5 93 10.5 0.0 5.2 0.8 113 chrX 17316376 intron B-H2 + chrX 17316432 intron B-H2 + chrX 17316489 intron B-H2 + chrX_5_17315001 chrX_17315001 RAL-819 4134 chrX 17322024 17322036 chrX 17322187 17322199 13 163 8.0 22.5 15.2 0.8 175 chrX 17322024 intron B-H2 + chrX 17322112 intron B-H2 + chrX 17322199 intron B-H2 + chrX_13_17320001 chrX_17320001 RAL-819 4135 chrX 17352575 17352620 chrX 17352694 17352748 25 126 0.0 7.0 3.5 5.6 173 chrX 17352575 intergenic not near genes chrX 17352662 intergenic not near genes chrX 17352748 intergenic not near genes chrX_25_17350001 chrX_17350001 RAL-819 4136 chrX 17357513 17357536 chrX 17357632 17357655 18 119 9.0 6.0 7.5 2.1 142 chrX 17357513 intergenic not near genes chrX 17357584 intergenic not near genes chrX 17357655 intergenic not near genes chrX_18_17355001 chrX_17355001 RAL-819 4137 chrX 17427021 17427023 chrX 17427133 17427135 4 112 22.5 10.0 16.2 0.2 114 chrX 17427021 intron,intron CG12994 -,CG5613 + chrX 17427078 intron,intron CG12994 -,CG5613 + chrX 17427135 intron,intron CG12994 -,CG5613 + chrX_4_17425001 chrX_17425001 RAL-819 4138 chrX 17427024 17427077 chrX 17427131 17427189 28 109 8.5 9.0 8.8 2.9 165 chrX 17427024 intron,intron CG12994 -,CG5613 + chrX 17427106 intron,intron CG12994 -,CG5613 + chrX 17427189 intron,intron CG12994 -,CG5613 + chrX_28_17425001 chrX_17425001 RAL-819 4139 chrX 17431334 17431339 chrX 17431700 17431705 jockey 5 366 32.0 13.5 22.8 0.2 371 chrX 17431334 intron CG12994 - chrX 17431520 intron CG12994 - chrX 17431705 intron CG12994 - chrX_5_17430001 chrX_17430001 RAL-819 4140 chrX 17434405 17434438 chrX 17434523 17434556 19 118 12.0 0.0 6.0 2.7 151 chrX 17434405 intron CG12994 - chrX 17434480 intron CG12994 - chrX 17434556 intron CG12994 - chrX_19_17430001 chrX_17430001 RAL-819 4141 chrX 17435727 17435783 chrX 17435828 17435884 32 99 15.5 11.5 13.5 2.2 157 chrX 17435727 intron CG12994 - chrX 17435806 intron CG12994 - chrX 17435884 intron CG12994 - chrX_32_17435001 chrX_17435001 RAL-819 4142 chrX 17443097 17443105 chrX 17443246 17443254 7 149 8.0 0.0 4.0 1.4 157 chrX 17443097 intron CG12994 - chrX 17443176 intron CG12994 - chrX 17443254 intron CG12994 - chrX_7_17440001 chrX_17440001 RAL-819 4143 chrX 17479914 17479927 chrX 17480016 17480029 9 101 26.0 25.5 25.8 0.3 115 chrX 17479914 intron CG43658 - chrX 17479972 intron CG43658 - chrX 17480029 intron CG43658 - chrX_9_17475001 chrX_17475001 RAL-819 4144 chrX 17479931 17479933 chrX 17480011 17480035 5 95 21.5 24.5 23.0 0.2 104 chrX 17479931 intron CG43658 - chrX 17479983 intron CG43658 - chrX 17480035 intron CG43658 - chrX_5_17475001 chrX_17475001 RAL-819 4145 chrX 17488133 17488187 chrX 17488246 17488299 32 112 4.5 8.0 6.2 4.4 166 chrX 17488133 intron CG43658 - chrX 17488216 intron CG43658 - chrX 17488299 intron CG43658 - chrX_32_17485001 chrX_17485001 RAL-819 4146 chrX 17508672 17508729 chrX 17508825 17508882 39 150 6.5 10.0 8.2 4.2 210 chrX 17508672 intron CG43658 - chrX 17508777 intron CG43658 - chrX 17508882 intron CG43658 - chrX_39_17505001 chrX_17505001 RAL-819 4147 chrX 17544982 17545039 chrX 17545089 17545125 29 106 11.0 12.5 11.8 2.3 143 chrX 17544982 intron CG43658 - chrX 17545054 intron CG43658 - chrX 17545125 intron CG43658 - chrX_29_17545001 chrX_17545001 RAL-819 4148 chrX 17546943 17546997 chrX 17547101 17547155 23 158 5.0 11.0 8.0 2.6 212 chrX 17546943 intron CG43658 - chrX 17547049 intron CG43658 - chrX 17547155 intron CG43658 - chrX_23_17545001 chrX_17545001 RAL-819 4149 chrX 17556921 17556976 chrX 17557445 17557455 mdg1 9 514 9.0 14.5 11.8 0.7 534 chrX 17556921 intron CG43658 - chrX 17557188 intron CG43658 - chrX 17557455 intron CG43658 - chrX_9_17555001 chrX_17555001 RAL-819 4150 chrX 17740349 17740378 chrX 17740451 17740464 8 96 17.5 11.0 14.2 0.5 115 chrX 17740349 intron CG42684 + chrX 17740406 intron CG42684 + chrX 17740464 intron CG42684 + chrX_8_17740001 chrX_17740001 RAL-819 4151 chrX 17740379 17740400 chrX 17740450 17740490 19 82 9.5 11.0 10.2 1.7 111 chrX 17740379 intron CG42684 + chrX 17740434 intron CG42684 + chrX 17740490 intron CG42684 + chrX_19_17740001 chrX_17740001 RAL-819 4152 chrX 17740402 17740403 chrX 17740448 17740505 4 77 8.5 10.5 9.5 0.4 103 chrX 17740402 intron CG42684 + chrX 17740454 intron CG42684 + chrX 17740505 intron CG42684 + chrX_4_17740001 chrX_17740001 RAL-819 4153 chrX 17766331 17766376 chrX 17766454 17766499 30 119 15.5 7.5 11.5 2.4 168 chrX 17766331 intergenic not near genes chrX 17766415 intergenic not near genes chrX 17766499 intergenic not near genes chrX_30_17765001 chrX_17765001 RAL-819 4154 chrX 17792937 17792942 chrX 17796258 17796263 flea 5 3321 22.5 14.0 18.2 0.3 3326 chrX 17792937 intron OdsH + chrX 17794600 intron OdsH + chrX 17796263 intron OdsH + chrX_5_17790001 chrX_17790001 RAL-819 4155 chrX 17792943 17792976 chrX 17796257 17796297 flea 12 3320 14.0 13.5 13.8 0.8 3354 chrX 17792943 intron OdsH + chrX 17794620 intron OdsH + chrX 17796297 intron OdsH + chrX_12_17790001 chrX_17790001 RAL-819 4156 chrX 17806964 17807015 chrX 17807069 17807120 30 105 7.0 12.0 9.5 2.9 156 chrX 17806964 intron OdsH + chrX 17807042 intron OdsH + chrX 17807120 intron OdsH + chrX_30_17805001 chrX_17805001 RAL-819 4157 chrX 17911828 17911877 chrX 17911941 17911990 32 112 1.5 7.0 4.2 6.2 162 chrX 17911828 intron CG6847 + chrX 17911909 intron CG6847 + chrX 17911990 intron CG6847 + chrX_32_17910001 chrX_17910001 RAL-819 4158 chrX 17972756 17972774 chrX 17972874 17972892 13 118 8.5 0.0 4.2 2.5 136 chrX 17972756 intron Sh - chrX 17972824 intron Sh - chrX 17972892 intron Sh - chrX_13_17970001 chrX_17970001 RAL-819 4159 chrX 18048742 18048802 chrX 18048884 18048944 58 138 9.0 8.5 8.8 5.9 202 chrX 18048742 intron Sh - chrX 18048843 intron Sh - chrX 18048944 intron Sh - chrX_58_18045001 chrX_18045001 RAL-819 4160 chrX 18050977 18051035 chrX 18051082 18051140 32 98 23.0 10.5 16.8 1.8 163 chrX 18050977 intron Sh - chrX 18051058 intron Sh - chrX 18051140 intron Sh - chrX_32_18050001 chrX_18050001 RAL-819 4161 chrX 18087628 18087674 chrX 18087724 18087761 20 89 5.5 12.5 9.0 2.0 133 chrX 18087628 intron,exon CG7536 -,dik + chrX 18087694 intron,3` UTR CG7536 -,dik + chrX 18087761 intron,3` UTR CG7536 -,dik + chrX_20_18085001 chrX_18085001 RAL-819 4162 chrX 18148612 18148624 chrX 18148740 18148752 11 128 14.5 4.0 9.2 1.1 140 chrX 18148612 intergenic not near genes chrX 18148682 intergenic not near genes chrX 18148752 intergenic not near genes chrX_11_18145001 chrX_18145001 RAL-819 4163 chrX 18153639 18153646 chrX 18153757 18153764 7 118 12.5 32.5 22.5 0.3 125 chrX 18153639 intergenic not near genes chrX 18153702 intergenic not near genes chrX 18153764 intergenic not near genes chrX_7_18150001 chrX_18150001 RAL-819 4164 chrX 18153647 18153650 chrX 18153750 18153768 5 111 12.0 17.5 14.8 0.3 121 chrX 18153647 intergenic not near genes chrX 18153708 intergenic not near genes chrX 18153768 intergenic not near genes chrX_5_18150001 chrX_18150001 RAL-819 4165 chrX 18153652 18153652 chrX 18153726 18153755 4 88 12.0 10.5 11.2 0.3 103 chrX 18153652 intergenic not near genes chrX 18153704 intergenic not near genes chrX 18153755 intergenic not near genes chrX_4_18150001 chrX_18150001 RAL-819 4166 chrX 18177002 18177061 chrX 18177120 18177154 30 114 3.0 3.5 3.2 7.1 152 chrX 18177002 intergenic not near genes chrX 18177078 intergenic not near genes chrX 18177154 intergenic Frq2 + chrX_30_18175001 chrX_18175001 RAL-819 4167 chrX 18215963 18215976 chrX 18216218 18216226 8 266 17.0 8.0 12.5 0.6 263 chrX 18215963 intron CG33639 - chrX 18216094 intron CG33639 - chrX 18216226 intron CG33639 - chrX_8_18215001 chrX_18215001 RAL-819 4168 chrX 18362930 18362939 chrX 18363018 18363041 6 98 0.0 11.0 5.5 0.9 111 chrX 18362930 intergenic CG6106 + chrX 18362986 intergenic CG6106 + chrX 18363041 intergenic not near genes chrX_6_18360001 chrX_18360001 RAL-819 4169 chrX 18429470 18429525 chrX 18434806 18434861 Transpac 43 5332 3.0 10.5 6.8 5.5 5391 chrX 18429470 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434861 intergenic not near genes chrX_43_18430001 chrX_18430001 RAL-819 4170 chrX 18453578 18453618 chrX 18453679 18453694 18 86 21.5 22.5 22.0 0.8 116 chrX 18453578 intron CG32547 - chrX 18453636 intron CG32547 - chrX 18453694 intron CG32547 - chrX_18_18450001 chrX_18450001 RAL-819 4171 chrX 18467199 18467254 chrX 18467388 18467423 42 187 8.5 11.5 10.0 3.8 224 chrX 18467199 intron CG32547 - chrX 18467311 intron CG32547 - chrX 18467423 intron CG32547 - chrX_42_18465001 chrX_18465001 RAL-819 4172 chrX 18486084 18486141 chrX 18486196 18486214 38 108 14.5 19.0 16.8 2.1 130 chrX 18486084 exon psh - chrX 18486149 intron psh - chrX 18486214 intron psh - chrX_38_18485001 chrX_18485001 RAL-819 4173 chrX 18558751 18558809 chrX 18558858 18558916 42 104 7.5 7.0 7.2 5.1 165 chrX 18558751 intron Bx + chrX 18558834 intron Bx + chrX 18558916 intron Bx + chrX_42_18555001 chrX_18555001 RAL-819 4174 chrX 12946235 12946235 chrX 18572525 18572525 7 5626290 43.0 50.0 46.5 0.1 5626290 chrX 12946235 3` UTR fne + chrX 15759380 intron Graf - chrX 18572525 intergenic not near genes chrX_7_15755001 chrX_15755001 RAL-819 4175 chrX 18576079 18576102 chrX 18576182 18576205 11 103 6.0 16.0 11.0 0.9 126 chrX 18576079 intergenic not near genes chrX 18576142 intergenic not near genes chrX 18576205 intergenic not near genes chrX_11_18575001 chrX_18575001 RAL-819 4176 chrX 18645005 18645047 chrX 18645111 18645160 38 117 15.0 11.5 13.2 2.7 155 chrX 18645005 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645160 intron Rip11 - chrX_38_18645001 chrX_18645001 RAL-819 4177 chrX 18764462 18764514 chrX 18764571 18764624 37 108 9.5 16.0 12.8 2.7 162 chrX 18764462 intergenic CCKLR-17D3 - chrX 18764543 3` UTR CCKLR-17D3 - chrX 18764624 3` UTR CCKLR-17D3 - chrX_37_18760001 chrX_18760001 RAL-819 4178 chrX 18774422 18774471 chrX 18774532 18774581 33 108 14.0 7.0 10.5 2.9 159 chrX 18774422 intergenic CCKLR-17D3 - chrX 18774502 intergenic CCKLR-17D3 - chrX 18774581 intergenic not near genes chrX_33_18770001 chrX_18770001 RAL-819 4179 chrX 18896495 18896548 chrX 18896631 18896684 32 136 8.5 13.5 11.0 2.7 189 chrX 18896495 3` UTR CG7349 + chrX 18896590 intergenic CG7349 + chrX 18896684 intergenic CG7349 + chrX_32_18895001 chrX_18895001 RAL-819 4180 chrX 18910369 18910418 chrX 18910479 18910526 32 107 4.5 11.5 8.0 3.6 157 chrX 18910369 3` UTR CG7378 + chrX 18910448 3` UTR CG7378 + chrX 18910526 3` UTR CG7378 + chrX_32_18910001 chrX_18910001 RAL-819 4181 chrX 18957046 18957101 chrX 18965734 18965766 roo 34 8683 9.5 10.5 10.0 3.1 8720 chrX 18957046 intron CG43759 + chrX 18961406 intron CG43759 + chrX 18965766 intron CG43759 + chrX_34_18960001 chrX_18960001 RAL-819 4182 chrX 18995676 18995699 chrX 18995776 18995800 6 101 27.5 12.5 20.0 0.3 124 chrX 18995676 intron CG43759 + chrX 18995738 intron CG43759 + chrX 18995800 intron CG43759 + chrX_6_18995001 chrX_18995001 RAL-819 4183 chrX 18995702 18995727 chrX 18995771 18995791 20 83 13.0 10.5 11.8 1.6 89 chrX 18995702 intron CG43759 + chrX 18995746 intron CG43759 + chrX 18995791 intron CG43759 + chrX_20_18995001 chrX_18995001 RAL-819 4184 chrX 19036405 19036418 chrX 19036506 19036519 7 101 7.0 0.0 3.5 1.6 114 chrX 19036405 intergenic not near genes chrX 19036462 intergenic not near genes chrX 19036519 intergenic not near genes chrX_7_19035001 chrX_19035001 RAL-819 4185 chrX 19044926 19044980 chrX 19045259 19045314 24 331 8.5 5.5 7.0 3.0 388 chrX 19044926 intergenic not near genes chrX 19045120 intergenic not near genes chrX 19045314 intergenic not near genes chrX_24_19045001 chrX_19045001 RAL-819 4186 chrX 19060389 19060433 chrX 19065198 19065242 Doc 35 4808 10.0 14.5 12.2 2.7 4853 chrX 19060389 intron CG14190 + chrX 19062816 intron CG14190 + chrX 19065242 intron CG14190 + chrX_35_19060001 chrX_19060001 RAL-819 4187 chrX 19073663 19073698 chrX 19073775 19073810 14 111 13.0 10.5 11.8 1.1 147 chrX 19073663 intergenic not near genes chrX 19073736 intergenic not near genes chrX 19073810 intergenic not near genes chrX_14_19070001 chrX_19070001 RAL-819 4188 chrX 19084073 19084123 chrX 19084218 19084268 19 144 3.0 8.0 5.5 2.9 195 chrX 19084073 intergenic CR45503 + chrX 19084170 intergenic CR45503 + chrX 19084268 intergenic CR45503 + chrX_19_19080001 chrX_19080001 RAL-819 4189 chrX 19124416 19124464 chrX 19124529 19124578 30 112 5.0 4.5 4.8 5.2 162 chrX 19124416 intergenic CG15882 - chrX 19124497 intergenic CG15882 - chrX 19124578 intergenic CG15882 -,tgy - chrX_30_19120001 chrX_19120001 RAL-819 4190 chrX 19125672 19125677 chrX 19125825 19125831 6 154 31.0 12.0 21.5 0.3 159 chrX 19125672 intron tgy - chrX 19125752 intron tgy - chrX 19125831 intron tgy - chrX_6_19125001 chrX_19125001 RAL-819 4191 chrX 19125680 19125690 chrX 19125823 19125844 8 152 27.5 11.0 19.2 0.4 164 chrX 19125680 intron tgy - chrX 19125762 intron tgy - chrX 19125844 intron tgy - chrX_8_19125001 chrX_19125001 RAL-819 4192 chrX 19125691 19125721 chrX 19125820 19125875 26 149 16.5 9.5 13.0 1.9 184 chrX 19125691 intron tgy - chrX 19125783 intron tgy - chrX 19125875 intron tgy - chrX_26_19125001 chrX_19125001 RAL-819 4193 chrX 19136528 19136561 chrX 19143473 19143506 412 17 6943 17.5 5.5 11.5 1.4 6978 chrX 19136528 intergenic not near genes chrX 19140017 intergenic not near genes chrX 19143506 3` UTR RhoGAP18B - chrX_17_19140001 chrX_19140001 RAL-819 4194 chrX 19136581 19136584 chrX 19143494 19143523 412 5 6936 9.5 6.0 7.8 0.6 6942 chrX 19136581 intergenic not near genes chrX 19140052 intergenic not near genes chrX 19143523 3` UTR RhoGAP18B - chrX_5_19140001 chrX_19140001 RAL-819 4195 chrX 19163676 19163685 chrX 19163827 19163833 7 150 31.5 12.0 21.8 0.3 157 chrX 19163676 intron RhoGAP18B - chrX 19163754 intron RhoGAP18B - chrX 19163833 intron RhoGAP18B - chrX_7_19160001 chrX_19160001 RAL-819 4196 chrX 19163686 19163731 chrX 19163826 19163881 39 146 11.5 11.0 11.2 3.2 195 chrX 19163686 intron RhoGAP18B - chrX 19163784 intron RhoGAP18B - chrX 19163881 intron RhoGAP18B - chrX_39_19160001 chrX_19160001 RAL-819 4197 chrX 19185512 19185568 chrX 19185633 19185689 14 118 0.0 6.0 3.0 3.5 177 chrX 19185512 intron CG33253 + chrX 19185600 intron CG33253 + chrX 19185689 exon CG33253 + chrX_14_19185001 chrX_19185001 RAL-819 4198 chrX 19296526 19296578 chrX 19296634 19296686 32 107 8.5 8.5 8.5 3.4 160 chrX 19296526 intron CG8034 - chrX 19296606 intron CG8034 - chrX 19296686 intron CG8034 - chrX_32_19295001 chrX_19295001 RAL-819 4199 chrX 19324555 19324573 chrX 19324658 19324676 14 102 13.5 8.0 10.8 1.2 121 chrX 19324555 intergenic not near genes chrX 19324616 intergenic not near genes chrX 19324676 intergenic not near genes chrX_14_19320001 chrX_19320001 RAL-819 4200 chrX 19339732 19339763 chrX 19339833 19339864 13 101 2.0 8.0 5.0 2.2 132 chrX 19339732 intron nAChRalpha7 - chrX 19339798 intron nAChRalpha7 - chrX 19339864 intron nAChRalpha7 - chrX_13_19335001 chrX_19335001 RAL-819 4201 chrX 19356972 19357023 chrX 19358438 19358507 NOF 20 1472 9.5 0.0 4.8 3.4 1535 chrX 19356972 intron kek5 + chrX 19357740 intron kek5 + chrX 19358507 intron kek5 + chrX_20_19355001 chrX_19355001 RAL-819 4202 chrX 19380137 19380187 chrX 19380403 19380453 pogo 31 264 13.5 12.0 12.8 2.2 316 chrX 19380137 intron kek5 + chrX 19380295 intron kek5 + chrX 19380453 intron kek5 + chrX_31_19380001 chrX_19380001 RAL-819 4203 chrX 19404608 19404653 chrX 19404725 19404731 14 112 7.0 1.5 4.2 2.7 123 chrX 19404608 intron kek5 + chrX 19404670 intron kek5 + chrX 19404731 intron kek5 + chrX_14_19400001 chrX_19400001 RAL-819 4204 chrX 16983076 16983077 chrX 19404960 19404965 7 2421886 21.5 39.5 30.5 0.2 2421889 chrX 16983076 intron CG45002 - chrX 18194020 intron Frq2 + chrX 19404965 intron kek5 + chrX_7_18190001 chrX_18190001 RAL-819 4205 chrX 19472103 19472151 chrX 19472698 19472745 jockey 21 585 11.0 8.0 9.5 2.0 642 chrX 19472103 intergenic kek5 + chrX 19472424 intergenic not near genes chrX 19472745 intergenic not near genes chrX_21_19470001 chrX_19470001 RAL-819 4206 chrX 19472154 19472157 chrX 19472697 19472751 jockey 16 575 7.5 8.0 7.8 1.8 597 chrX 19472154 intergenic kek5 + chrX 19472452 intergenic not near genes chrX 19472751 intergenic not near genes chrX_16_19470001 chrX_19470001 RAL-819 4207 chrX 19500534 19500545 chrX 19500636 19500647 8 101 24.0 9.0 16.5 0.5 113 chrX 19500534 intron,intron CG14200 +,Pfrx + chrX 19500590 intron,intron CG14200 +,Pfrx + chrX 19500647 intron,intron CG14200 +,Pfrx + chrX_8_19500001 chrX_19500001 RAL-819 4208 chrX 19500551 19500751 chrX 19500635 19500863 66 104 7.0 8.5 7.8 7.5 312 chrX 19500551 intron,intron CG14200 +,Pfrx + chrX 19500707 intron,intron CG14200 +,Pfrx + chrX 19500863 intron,intron CG14200 +,Pfrx + chrX_66_19500001 chrX_19500001 RAL-819 4209 chrX 19541405 19541446 chrX 19541510 19541538 18 103 7.5 5.5 6.5 2.4 133 chrX 19541405 intron CG32532 - chrX 19541472 intron CG32532 - chrX 19541538 intron CG32532 - chrX_18_19540001 chrX_19540001 RAL-819 4210 chrX 19558113 19558169 chrX 19558214 19558254 29 91 5.0 12.5 8.8 3.0 141 chrX 19558113 intergenic mir-4966 + chrX 19558184 intergenic mir-4966 + chrX 19558254 intergenic mir-4966 +,mir-975 + chrX_29_19555001 chrX_19555001 RAL-819 4211 chrX 19576534 19576537 chrX 19576637 19576640 6 103 19.5 12.0 15.8 0.4 106 chrX 19576534 intron Tao - chrX 19576587 intron Tao - chrX 19576640 intron Tao - chrX_6_19575001 chrX_19575001 RAL-819 4212 chrX 19576539 19576590 chrX 19576635 19576693 34 101 12.5 12.0 12.2 2.6 154 chrX 19576539 intron Tao - chrX 19576616 intron Tao - chrX 19576693 intron Tao - chrX_34_19575001 chrX_19575001 RAL-819 4213 chrX 19710053 19710104 chrX 19711857 19711911 S-element 56 1803 12.5 9.5 11.0 4.7 1858 chrX 19710053 intron meso18E - chrX 19710982 intron meso18E - chrX 19711911 intron meso18E - chrX_56_19710001 chrX_19710001 RAL-819 4214 chrX 19756102 19756150 chrX 19756213 19756226 10 107 8.0 4.5 6.2 1.4 124 chrX 19756102 intron Pmp70 + chrX 19756164 intron Pmp70 + chrX 19756226 intron Pmp70 + chrX_10_19755001 chrX_19755001 RAL-819 4215 chrX 19762559 19762606 chrX 19762664 19762681 13 103 10.5 2.5 6.5 1.7 122 chrX 19762559 5` UTR CG12702 - chrX 19762620 5` UTR CG12702 - chrX 19762681 5` UTR CG12702 - chrX_13_19760001 chrX_19760001 RAL-819 4216 chrX 19797327 19797339 chrX 19804665 19804677 Stalker4 9 7337 29.0 14.0 21.5 0.4 7350 chrX 19797327 intergenic not near genes chrX 19801002 intergenic not near genes chrX 19804677 intergenic not near genes chrX_9_19800001 chrX_19800001 RAL-819 4217 chrX 19827332 19827345 chrX 19827435 19827448 12 102 23.0 13.5 18.2 0.6 116 chrX 19827332 intergenic not near genes chrX 19827390 intergenic not near genes chrX 19827448 intergenic not near genes chrX_12_19825001 chrX_19825001 RAL-819 4218 chrX 19827347 19827377 chrX 19827429 19827480 20 101 13.5 14.0 13.8 1.4 133 chrX 19827347 intergenic not near genes chrX 19827414 intergenic not near genes chrX 19827480 intergenic not near genes chrX_20_19825001 chrX_19825001 RAL-819 4219 chrX 19838484 19838527 chrX 19838586 19838617 27 101 15.5 23.5 19.5 1.3 133 chrX 19838484 intron pico - chrX 19838550 intron pico - chrX 19838617 intron pico - chrX_27_19835001 chrX_19835001 RAL-819 4220 chrX 19880361 19880392 chrX 19880505 19880536 12 142 8.5 12.5 10.5 1.0 175 chrX 19880361 intron Hers + chrX 19880448 intron Hers + chrX 19880536 intron Hers + chrX_12_19880001 chrX_19880001 RAL-819 4221 chrX 19881437 19881455 chrX 19881538 19881560 18 105 20.0 8.5 14.2 1.2 123 chrX 19881437 intron Hers + chrX 19881498 intron Hers + chrX 19881560 intron Hers + chrX_18_19880001 chrX_19880001 RAL-819 4222 chrX 19881456 19881484 chrX 19881536 19881590 19 103 8.5 8.5 8.5 2.0 134 chrX 19881456 intron Hers + chrX 19881523 intron Hers + chrX 19881590 intron Hers + chrX_19_19880001 chrX_19880001 RAL-819 4223 chrX 19883741 19883797 chrX 19883851 19883907 33 108 12.5 13.0 12.8 2.4 166 chrX 19883741 intron Hers + chrX 19883824 intron Hers + chrX 19883907 intron Hers + chrX_33_19880001 chrX_19880001 RAL-819 4224 chrX 19970391 19970401 chrX 19970480 19970486 6 94 29.0 20.0 24.5 0.2 95 chrX 19970391 intergenic not near genes chrX 19970438 intergenic not near genes chrX 19970486 intergenic not near genes chrX_6_19970001 chrX_19970001 RAL-819 4225 chrX 19971795 19971825 chrX 19971897 19971923 17 98 18.5 16.5 17.5 0.9 128 chrX 19971795 intergenic not near genes chrX 19971859 intergenic not near genes chrX 19971923 intergenic not near genes chrX_17_19970001 chrX_19970001 RAL-819 4226 chrX 19983848 19983898 chrX 19983952 19984003 31 105 1.0 8.5 4.8 5.3 155 chrX 19983848 intergenic not near genes chrX 19983926 intergenic not near genes chrX 19984003 intergenic not near genes chrX_31_19980001 chrX_19980001 RAL-819 4227 chrX 19992391 19992437 chrX 19992492 19992512 26 97 16.5 18.0 17.2 1.4 121 chrX 19992391 intergenic not near genes chrX 19992452 intergenic not near genes chrX 19992512 intergenic not near genes chrX_26_19990001 chrX_19990001 RAL-819 4228 chrX 20021947 20022005 chrX 20022162 20022208 46 211 12.0 7.5 9.8 4.3 261 chrX 20021947 intron Dop2R - chrX 20022078 intron Dop2R - chrX 20022208 intron Dop2R - chrX_46_20020001 chrX_20020001 RAL-819 4229 chrX 20041514 20041562 chrX 20041613 20041667 34 102 7.5 15.0 11.2 2.8 153 chrX 20041514 intron Dop2R - chrX 20041590 intron Dop2R - chrX 20041667 intron Dop2R - chrX_34_20040001 chrX_20040001 RAL-819 4230 chrX 20069237 20069288 chrX 20069395 20069433 23 150 13.5 4.5 9.0 2.3 196 chrX 20069237 intergenic not near genes chrX 20069335 intergenic not near genes chrX 20069433 intergenic not near genes chrX_23_20065001 chrX_20065001 RAL-819 4231 chrX 20081021 20081200 chrX 20081151 20081314 40 119 0.0 0.0 0.0 40.0 293 chrX 20081021 intergenic not near genes chrX 20081168 intergenic not near genes chrX 20081314 intergenic not near genes chrX_40_20080001 chrX_20080001 RAL-819 4232 chrX 20125380 20125398 chrX 20125479 20125505 12 106 0.0 13.5 6.8 1.5 125 chrX 20125380 intergenic CG34331 + chrX 20125442 intergenic CG34331 + chrX 20125505 intergenic CG34331 + chrX_12_20125001 chrX_20125001 RAL-819 4233 chrX 20132278 20132308 chrX 20132386 20132395 11 104 15.5 14.5 15.0 0.7 117 chrX 20132278 intergenic not near genes chrX 20132336 intergenic not near genes chrX 20132395 intergenic not near genes chrX_11_20130001 chrX_20130001 RAL-819 4234 chrX 20144292 20144315 chrX 20144397 20144400 16 103 0.0 19.0 9.5 1.5 108 chrX 20144292 intergenic not near genes chrX 20144346 intergenic not near genes chrX 20144400 intergenic not near genes chrX_16_20140001 chrX_20140001 RAL-819 4235 chrX 20144464 20144471 chrX 21085284 21085291 INE-1 5 940820 23.0 40.5 31.8 0.2 940827 chrX 20144464 intergenic not near genes chrX 20614878 intron RunxA - chrX 21085291 intergenic not near genes chrX_5_20610001 chrX_20610001 RAL-819 4236 chrX 20144828 20144876 chrX 20145011 20145067 32 189 9.0 10.5 9.8 3.0 239 chrX 20144828 intergenic not near genes chrX 20144948 intergenic not near genes chrX 20145067 intergenic not near genes chrX_32_20140001 chrX_20140001 RAL-819 4237 chrX 20271477 20271516 chrX 20271594 20271633 18 116 10.0 0.0 5.0 3.0 156 chrX 20271477 intergenic not near genes chrX 20271555 intergenic not near genes chrX 20271633 intergenic not near genes chrX_18_20270001 chrX_20270001 RAL-819 4238 chrX 20312856 20312911 chrX 20312959 20313014 37 102 13.0 10.5 11.8 2.9 158 chrX 20312856 intron CG1504 - chrX 20312935 intron CG1504 - chrX 20313014 intron CG1504 - chrX_37_20310001 chrX_20310001 RAL-819 4239 chrX 20314248 20314262 chrX 20314354 20314357 6 104 9.0 27.0 18.0 0.3 109 chrX 20314248 intron CG1504 - chrX 20314302 intron CG1504 - chrX 20314357 intron CG1504 - chrX_6_20310001 chrX_20310001 RAL-819 4240 chrX 20320275 20320308 chrX 20320377 20320410 18 99 10.5 12.0 11.2 1.5 135 chrX 20320275 intron CG1504 - chrX 20320342 intron CG1504 - chrX 20320410 intron CG1504 - chrX_18_20320001 chrX_20320001 RAL-819 4241 chrX 20362141 20362169 chrX 20362506 20362534 23 363 4.0 13.0 8.5 2.4 393 chrX 20362141 intergenic not near genes chrX 20362338 intergenic not near genes chrX 20362534 intergenic not near genes chrX_23_20360001 chrX_20360001 RAL-819 4242 chrX 20362848 20362881 chrX 20362950 20362959 16 96 8.5 0.0 4.2 3.1 111 chrX 20362848 intergenic not near genes chrX 20362904 intergenic not near genes chrX 20362959 intergenic not near genes chrX_16_20360001 chrX_20360001 RAL-819 4243 chrX 20374067 20374124 chrX 20374168 20374210 27 98 3.5 9.0 6.2 3.8 143 chrX 20374067 intergenic not near genes chrX 20374138 intergenic not near genes chrX 20374210 intergenic not near genes chrX_27_20370001 chrX_20370001 RAL-819 4244 chrX 20377331 20377340 chrX 20378822 20378832 hobo 10 1491 15.5 34.0 24.8 0.4 1501 chrX 20377331 intergenic not near genes chrX 20378082 intergenic not near genes chrX 20378832 intergenic not near genes chrX_10_20375001 chrX_20375001 RAL-819 4245 chrX 20377341 20377345 chrX 20378797 20378801 hobo 4 1474 14.5 24.0 19.2 0.2 1460 chrX 20377341 intergenic not near genes chrX 20378071 intergenic not near genes chrX 20378801 intergenic not near genes chrX_4_20375001 chrX_20375001 RAL-819 4246 chrX 20385599 20385621 chrX 20385884 20385892 6 281 11.5 1.5 6.5 0.8 293 chrX 20385599 intergenic not near genes chrX 20385746 intergenic not near genes chrX 20385892 intergenic not near genes chrX_6_20385001 chrX_20385001 RAL-819 4247 chrX 20386795 20386849 chrX 20386906 20386960 46 109 7.5 8.0 7.8 5.2 165 chrX 20386795 intergenic not near genes chrX 20386878 intergenic not near genes chrX 20386960 intergenic not near genes chrX_46_20385001 chrX_20385001 RAL-819 4248 chrX 20415051 20415068 chrX 20415152 20415160 6 100 16.5 7.0 11.8 0.5 109 chrX 20415051 intergenic not near genes chrX 20415106 intergenic not near genes chrX 20415160 intergenic not near genes chrX_6_20415001 chrX_20415001 RAL-819 4249 chrX 20427112 20427134 chrX 20427264 20427286 10 152 93.0 79.5 86.2 0.1 174 chrX 20427112 intergenic CG15456 -,CG11710 - chrX 20427199 intergenic CG15456 -,CG11710 - chrX 20427286 intergenic CG11710 -,CG15456 - chrX_10_20425001 chrX_20425001 RAL-819 4250 chrX 20426178 20426222 chrX 20428347 20428406 62 2180 150.5 172.0 161.2 0.4 2228 chrX 20426178 exon cactin + chrX 20427292 intergenic CG11710 -,CG15456 - chrX 20428406 exon CG11710 - chrX_62_20425001 chrX_20425001 RAL-819 4251 chrX 20467991 20468024 chrX 20468105 20468138 15 111 15.0 0.0 7.5 1.8 147 chrX 20467991 intron GstT3 + chrX 20468064 intron GstT3 + chrX 20468138 intron GstT3 + chrX_15_20465001 chrX_20465001 RAL-819 4252 chrX 20476938 20476979 chrX 20477053 20477094 39 113 16.0 10.5 13.2 2.7 156 chrX 20476938 intron RhoGAP19D - chrX 20477016 intron RhoGAP19D - chrX 20477094 intron RhoGAP19D - chrX_39_20475001 chrX_20475001 RAL-819 4253 chrX 20484363 20484403 chrX 20484493 20484533 20 130 11.5 10.0 10.8 1.7 170 chrX 20484363 intron RhoGAP19D - chrX 20484448 intron RhoGAP19D - chrX 20484533 intron RhoGAP19D - chrX_20_20480001 chrX_20480001 RAL-819 4254 chrX 20493887 20493929 chrX 20494071 20494112 14 182 0.0 8.0 4.0 2.8 225 chrX 20493887 intron RhoGAP19D - chrX 20494000 intron RhoGAP19D - chrX 20494112 intron RhoGAP19D - chrX_14_20490001 chrX_20490001 RAL-819 4255 chrX 20499129 20499189 chrX 20499237 20499272 40 105 11.0 11.0 11.0 3.3 143 chrX 20499129 intron RhoGAP19D - chrX 20499200 intron RhoGAP19D - chrX 20499272 intron RhoGAP19D - chrX_40_20495001 chrX_20495001 RAL-819 4256 chrX 20504105 20504112 chrX 20505651 20505658 transib2 9 1546 32.0 15.5 23.8 0.4 1553 chrX 20504105 intron RhoGAP19D - chrX 20504882 intron RhoGAP19D - chrX 20505658 intron RhoGAP19D - chrX_9_20500001 chrX_20500001 RAL-819 4257 chrX 20504114 20504151 chrX 20505649 20505696 transib2 26 1544 16.0 14.0 15.0 1.6 1582 chrX 20504114 intron RhoGAP19D - chrX 20504905 intron RhoGAP19D - chrX 20505696 intron RhoGAP19D - chrX_26_20500001 chrX_20500001 RAL-819 4258 chrX 20526448 20526715 chrX 20526589 20526823 34 113 0.0 0.0 0.0 34.0 375 chrX 20526448 intergenic not near genes chrX 20526636 intergenic not near genes chrX 20526823 intergenic not near genes chrX_34_20525001 chrX_20525001 RAL-819 4259 chrX 20528414 20528447 chrX 20528591 20528595 17 190 6.0 0.5 3.2 4.0 181 chrX 20528414 intergenic CG42579 + chrX 20528504 intergenic CG42579 + chrX 20528595 intergenic not near genes chrX_17_20525001 chrX_20525001 RAL-819 4260 chrX 20546525 20546564 chrX 20546716 20546755 17 189 4.0 5.5 4.8 2.9 230 chrX 20546525 intron RunxB + chrX 20546640 intron RunxB + chrX 20546755 intron RunxB + chrX_17_20545001 chrX_20545001 RAL-819 4261 chrX 20615120 20615130 chrX 20615230 20615240 5 110 14.5 0.0 7.2 0.6 120 chrX 20615120 intron RunxA - chrX 20615180 intron RunxA - chrX 20615240 intron RunxA - chrX_5_20615001 chrX_20615001 RAL-819 4262 chrX 20680017 20680047 chrX 20680119 20680134 17 101 5.0 10.0 7.5 2.0 117 chrX 20680017 intergenic not near genes chrX 20680076 intergenic not near genes chrX 20680134 intergenic not near genes chrX_17_20680001 chrX_20680001 RAL-819 4263 chrX 20710410 20710439 chrX 20710513 20710542 19 103 3.5 6.5 5.0 3.2 132 chrX 20710410 intergenic not near genes chrX 20710476 intergenic not near genes chrX 20710542 intergenic not near genes chrX_19_20710001 chrX_20710001 RAL-819 4264 chrX 20741554 20741596 chrX 20741655 20741678 19 100 19.5 2.5 11.0 1.6 124 chrX 20741554 intergenic not near genes chrX 20741616 intergenic not near genes chrX 20741678 intergenic not near genes chrX_19_20740001 chrX_20740001 RAL-819 4265 chrX 20744000 20744057 chrX 20744475 20744533 34 474 8.5 8.5 8.5 3.6 533 chrX 20744000 intergenic not near genes chrX 20744266 intergenic not near genes chrX 20744533 intergenic CG15452 - chrX_34_20740001 chrX_20740001 RAL-819 4266 chrX 20774557 20774597 chrX 20774664 20774705 28 107 5.5 5.5 5.5 4.3 148 chrX 20774557 intron shakB - chrX 20774631 intron shakB - chrX 20774705 intron shakB - chrX_28_20770001 chrX_20770001 RAL-819 4267 chrX 20810699 20810708 chrX 20810802 20810811 5 103 8.0 3.0 5.5 0.8 112 chrX 20810699 intron shakB - chrX 20810755 intron shakB - chrX 20810811 intron shakB - chrX_5_20810001 chrX_20810001 RAL-819 4268 chrX 20836702 20836758 chrX 20844328 20844385 roo 28 7625 3.0 9.5 6.2 3.9 7683 chrX 20836702 intron shakB - chrX 20840544 intron shakB - chrX 20844385 intron shakB - chrX_28_20840001 chrX_20840001 RAL-819 4269 chrX 20899360 20899408 chrX 20899721 20899769 30 356 3.0 9.5 6.2 4.2 409 chrX 20899360 intron shakB - chrX 20899564 intron shakB - chrX 20899769 intron shakB - chrX_30_20895001 chrX_20895001 RAL-819 4270 chrX 20911900 20911921 chrX 20911990 20912023 11 98 10.5 11.0 10.8 0.9 123 chrX 20911900 intron shakB - chrX 20911962 intron shakB - chrX 20912023 intron shakB - chrX_11_20910001 chrX_20910001 RAL-819 4271 chrX 20940699 20940713 chrX 20942193 20942207 hobo 10 1494 33.5 5.5 19.5 0.5 1508 chrX 20940699 intergenic not near genes chrX 20941453 intergenic not near genes chrX 20942207 intergenic not near genes chrX_10_20940001 chrX_20940001 RAL-819 4272 chrX 20940714 20940736 chrX 20942187 20942230 hobo 20 1492 23.0 5.5 14.2 1.3 1516 chrX 20940714 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942230 intergenic not near genes chrX_20_20940001 chrX_20940001 RAL-819 4273 chrX 20956969 20957008 chrX 20962436 20962475 I-element 23 5466 16.0 23.5 19.8 1.1 5506 chrX 20956969 intergenic not near genes chrX 20959722 intergenic not near genes chrX 20962475 intergenic Ser6 - chrX_23_20955001 chrX_20955001 RAL-819 4274 chrX 20981005 20981060 chrX 20981133 20981188 23 127 7.5 12.5 10.0 2.1 183 chrX 20981005 intergenic not near genes chrX 20981096 intergenic not near genes chrX 20981188 intergenic not near genes chrX_23_20980001 chrX_20980001 RAL-819 4275 chrX 21029163 21029178 chrX 21029396 21029411 8 239 3.0 16.5 9.8 0.7 248 chrX 21029163 3` UTR CG1529 - chrX 21029287 3` UTR CG1529 - chrX 21029411 3` UTR CG1529 - chrX_8_21025001 chrX_21025001 RAL-819 4276 chrX 21029787 21029809 chrX 21029953 21029975 15 166 10.0 25.0 17.5 0.8 188 chrX 21029787 3` UTR CG1529 - chrX 21029881 3` UTR CG1529 - chrX 21029975 3` UTR CG1529 - chrX_15_21025001 chrX_21025001 RAL-819 4277 chrX 21061845 21061897 chrX 21062356 21062408 roo 33 511 8.0 7.5 7.8 3.7 563 chrX 21061845 intron bves + chrX 21062126 intron bves + chrX 21062408 intron,3` UTR bves +,CG32512 - chrX_33_21060001 chrX_21060001 RAL-819 4278 chrX 20144555 20144559 chrX 21085243 21085247 4 940688 33.5 41.5 37.5 0.1 940692 chrX 20144555 intergenic not near genes chrX 20614901 intron RunxA - chrX 21085247 intergenic not near genes chrX_4_20610001 chrX_20610001 RAL-819 4279 chrX 21086110 21086163 chrX 21087165 21087180 jockey 30 1052 9.5 11.5 10.5 2.6 1070 chrX 21086110 intergenic not near genes chrX 21086645 intergenic not near genes chrX 21087180 intergenic not near genes chrX_30_21085001 chrX_21085001 RAL-819 4280 chrX 21088016 21088075 chrX 21088173 21088232 36 155 7.0 7.5 7.2 4.4 216 chrX 21088016 intergenic not near genes chrX 21088124 intergenic not near genes chrX 21088232 intergenic not near genes chrX_36_21085001 chrX_21085001 RAL-819 4281 chrX 21091291 21091336 chrX 21091402 21091448 19 110 0.0 2.0 1.0 9.5 157 chrX 21091291 intergenic not near genes chrX 21091370 intergenic not near genes chrX 21091448 intergenic not near genes chrX_19_21090001 chrX_21090001 RAL-819 4282 chrX 21140889 21140908 chrX 21140996 21141010 9 106 17.0 2.0 9.5 0.9 121 chrX 21140889 3` UTR CG34120 + chrX 21140950 3` UTR CG34120 + chrX 21141010 intergenic CG34120 + chrX_9_21140001 chrX_21140001 RAL-819 4283 chrX 21166115 21166163 chrX 21166218 21166269 24 103 7.5 4.5 6.0 3.4 154 chrX 21166115 intergenic not near genes chrX 21166192 intergenic not near genes chrX 21166269 intergenic not near genes chrX_24_21165001 chrX_21165001 RAL-819 4284 chrX 21190551 21190825 chrX 21190732 21190931 31 119 0.5 0.0 0.2 25.8 380 chrX 21190551 intergenic not near genes chrX 21190741 intergenic not near genes chrX 21190931 intergenic not near genes chrX_31_21190001 chrX_21190001 RAL-819 4285 chrX 21268042 21268068 chrX 21268159 21268185 14 116 10.0 11.5 10.8 1.2 143 chrX 21268042 intron CG32521 - chrX 21268114 intron CG32521 - chrX 21268185 intron CG32521 - chrX_14_21265001 chrX_21265001 RAL-819 4286 chrX 21328092 21328147 chrX 21328228 21328275 19 136 8.0 8.0 8.0 2.1 183 chrX 21328092 3` UTR CG1486 + chrX 21328184 intergenic CG1486 +,tty - chrX 21328275 intergenic CG1486 +,tty - chrX_19_21325001 chrX_21325001 RAL-819 4287 chrX 21410630 21410675 chrX 21410724 21410779 30 102 0.0 10.0 5.0 5.0 149 chrX 21410630 intergenic CR45003 - chrX 21410704 intergenic CR45003 - chrX 21410779 intergenic CR45003 - chrX_30_21410001 chrX_21410001 RAL-819 4288 chrX 21166248 21166253 chrX 21434950 21434955 INE-1 4 268702 33.0 30.5 31.8 0.1 268707 chrX 21166248 intergenic not near genes chrX 21300602 intron CG1718 - chrX 21434955 intron CG42343 - chrX_4_21300001 chrX_21300001 RAL-819 4289 chrX 21454863 21454871 chrX 21454972 21454980 4 109 4.5 17.0 10.8 0.3 117 chrX 21454863 intron CG42343 - chrX 21454922 intron CG42343 - chrX 21454980 intron CG42343 - chrX_4_21450001 chrX_21450001 RAL-819 4290 chrX 21455189 21455244 chrX 21455393 21455456 28 205 4.5 0.0 2.2 8.8 267 chrX 21455189 intron CG42343 - chrX 21455322 intron CG42343 - chrX 21455456 intron CG42343 - chrX_28_21455001 chrX_21455001 RAL-819 4291 chrX 21458664 21458731 chrX 21464125 21464192 Ivk 37 5459 6.5 5.0 5.8 5.4 5528 chrX 21458664 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464192 intergenic not near genes chrX_37_21460001 chrX_21460001 RAL-819 4292 chrX 21464920 21464965 chrX 21465024 21465069 20 102 8.0 6.0 7.0 2.5 149 chrX 21464920 intergenic not near genes chrX 21464994 intergenic not near genes chrX 21465069 intergenic not near genes chrX_20_21460001 chrX_21460001 RAL-819 4293 chrX 21492251 21492306 chrX 21492389 21492444 51 136 9.0 8.0 8.5 5.4 193 chrX 21492251 intergenic not near genes chrX 21492348 intergenic not near genes chrX 21492444 intergenic not near genes chrX_51_21490001 chrX_21490001 RAL-819 4294 chrX 21507299 21507318 chrX 21507414 21507431 17 114 23.0 7.5 15.2 1.0 132 chrX 21507299 intron CR45082 - chrX 21507365 intron CR45082 - chrX 21507431 intron CR45082 - chrX_17_21505001 chrX_21505001 RAL-819 4295 chrX 21507320 21507355 chrX 21507409 21507439 23 103 8.0 5.5 6.8 2.9 119 chrX 21507320 intron CR45082 - chrX 21507380 intron CR45082 - chrX 21507439 intron CR45082 - chrX_23_21505001 chrX_21505001 RAL-819 4296 chrX 21565396 21565402 chrX 21565494 21565505 6 102 15.5 10.5 13.0 0.4 109 chrX 21565396 intergenic not near genes chrX 21565450 intergenic not near genes chrX 21565505 intergenic not near genes chrX_6_21565001 chrX_21565001 RAL-819 4297 chrX 21565403 21565438 chrX 21565491 21565529 16 101 6.5 9.0 7.8 1.8 126 chrX 21565403 intergenic not near genes chrX 21565466 intergenic not near genes chrX 21565529 intergenic not near genes chrX_16_21565001 chrX_21565001 RAL-819 4298 chrX 21573865 21573907 chrX 21573977 21574018 20 108 12.0 6.5 9.2 2.0 153 chrX 21573865 intergenic not near genes chrX 21573942 intergenic not near genes chrX 21574018 intergenic not near genes chrX_20_21570001 chrX_21570001 RAL-819 4299 chrX 21575518 21575559 chrX 21575622 21575663 22 104 12.5 14.0 13.2 1.5 145 chrX 21575518 intergenic not near genes chrX 21575590 intergenic not near genes chrX 21575663 intergenic not near genes chrX_22_21575001 chrX_21575001 RAL-819 4300 chrX 21595566 21595574 chrX 21598645 21598653 micropia 6 3079 34.5 31.0 32.8 0.2 3087 chrX 21595566 intergenic not near genes chrX 21597110 intergenic not near genes chrX 21598653 intergenic not near genes chrX_6_21595001 chrX_21595001 RAL-819 4301 chrX 21668234 21668286 chrX 21668344 21668396 41 108 8.0 2.5 5.2 6.6 162 chrX 21668234 intergenic not near genes chrX 21668315 intergenic not near genes chrX 21668396 intergenic not near genes chrX_41_21665001 chrX_21665001 RAL-819 4302 chrX 22478871 22478892 chrX 22479029 22479050 15 158 0.0 15.0 7.5 1.8 179 chrX 22478871 intron CG12576 - chrX 22478960 intron CG12576 - chrX 22479050 intron CG12576 - chrX_15_22475001 chrX_22475001 RAL-819 4303 chrX 22478893 22478898 chrX 22479028 22479056 4 150 0.0 14.5 7.2 0.5 163 chrX 22478893 intron CG12576 - chrX 22478974 intron CG12576 - chrX 22479056 intron CG12576 - chrX_4_22475001 chrX_22475001 RAL-819 4304 chrX 22504671 22504684 chrX 22504793 22504806 8 122 2.5 13.5 8.0 0.9 135 chrX 22504671 intron l(1)G0196 + chrX 22504738 intron l(1)G0196 + chrX 22504806 intron l(1)G0196 + chrX_8_22500001 chrX_22500001 RAL-819 4305 chrX 22504685 22504705 chrX 22504788 22504827 11 116 0.0 10.5 5.2 1.8 142 chrX 22504685 intron l(1)G0196 + chrX 22504756 intron l(1)G0196 + chrX 22504827 intron l(1)G0196 + chrX_11_22500001 chrX_22500001 RAL-819 4306 chrX 22504709 22504720 chrX 22504786 22504842 13 112 0.0 9.5 4.8 2.2 133 chrX 22504709 intron l(1)G0196 + chrX 22504776 intron l(1)G0196 + chrX 22504842 intron l(1)G0196 + chrX_13_22500001 chrX_22500001 RAL-819 4307 chrX 22506966 22506979 chrX 22507076 22507089 7 110 18.5 13.5 16.0 0.4 123 chrX 22506966 intron l(1)G0196 + chrX 22507028 intron l(1)G0196 + chrX 22507089 intron l(1)G0196 + chrX_7_22505001 chrX_22505001 RAL-819 4308 chrX 22506980 22506990 chrX 22507067 22507100 10 105 16.5 8.0 12.2 0.8 120 chrX 22506980 intron l(1)G0196 + chrX 22507040 intron l(1)G0196 + chrX 22507100 intron l(1)G0196 + chrX_10_22505001 chrX_22505001 RAL-819 4309 chrX 22506991 22507014 chrX 22507066 22507095 13 103 9.5 7.5 8.5 1.4 104 chrX 22506991 intron l(1)G0196 + chrX 22507043 intron l(1)G0196 + chrX 22507095 intron l(1)G0196 + chrX_13_22505001 chrX_22505001 RAL-819 4310 chrX 22509304 22509311 chrX 22509407 22509414 7 103 0.5 21.5 11.0 0.6 110 chrX 22509304 intergenic not near genes chrX 22509359 intergenic not near genes chrX 22509414 intergenic not near genes chrX_7_22505001 chrX_22505001 RAL-819 4311 chrX 22516302 22516313 chrX 22516417 22516429 6 116 6.0 0.0 3.0 1.5 127 chrX 22516302 intron CG17600 + chrX 22516366 intron CG17600 + chrX 22516429 intron CG17600 + chrX_6_22515001 chrX_22515001 RAL-819 4312 chrX 22564566 22564571 chrX 22575113 22575144 jockey 14 10549 24.0 21.5 22.8 0.6 10578 chrX 22564566 intergenic not near genes chrX 22569855 intergenic not near genes chrX 22575144 intergenic not near genes chrX_14_22565001 chrX_22565001 RAL-819 4313 chrX 22584311 22584366 chrX 22584427 22584482 40 115 5.5 10.0 7.8 4.5 171 chrX 22584311 intron Cda4 - chrX 22584396 intron Cda4 - chrX 22584482 intron Cda4 - chrX_40_22580001 chrX_22580001 RAL-819 4314 chrX 22585478 22585538 chrX 22585586 22585647 12 108 8.5 9.0 8.8 1.2 169 chrX 22585478 intron Cda4 - chrX 22585562 intron Cda4 - chrX 22585647 intron Cda4 - chrX_12_22585001 chrX_22585001 RAL-819 4315 chrX 22585917 22585922 chrX 22586018 22586033 7 107 1.0 9.5 5.2 1.1 116 chrX 22585917 intron Cda4 - chrX 22585975 intron Cda4 - chrX 22586033 intron Cda4 - chrX_7_22585001 chrX_22585001 RAL-819 4316 chrX 22637516 22637544 chrX 22637618 22637636 4 100 6.5 0.5 3.5 0.9 120 chrX 22637516 intergenic not near genes chrX 22637576 intergenic not near genes chrX 22637636 intergenic not near genes chrX_4_22635001 chrX_22635001 RAL-819 4317 chrX 22646505 22646523 chrX 22646631 22646648 11 126 10.5 0.0 5.2 1.8 143 chrX 22646505 intergenic not near genes chrX 22646576 intergenic not near genes chrX 22646648 intergenic not near genes chrX_11_22645001 chrX_22645001 RAL-819 4318 chrX 22660551 22660601 chrX 22660654 22660710 34 107 11.0 15.0 13.0 2.4 159 chrX 22660551 intron CR44997 + chrX 22660630 intron CR44997 + chrX 22660710 intron CR44997 + chrX_34_22660001 chrX_22660001 RAL-819 4319 chrX 22663878 22663935 chrX 22663995 22664052 13 116 0.0 5.0 2.5 3.7 174 chrX 22663878 intron CR44997 + chrX 22663965 intron CR44997 + chrX 22664052 intron CR44997 + chrX_13_22660001 chrX_22660001 RAL-819 4320 chrX 22681458 22681479 chrX 22688941 22688962 HMS-Beagle2 17 7481 21.5 11.5 16.5 1.0 7504 chrX 22681458 intron CR44997 + chrX 22685210 intron CR44997 + chrX 22688962 intron CR44997 + chrX_17_22685001 chrX_22685001 RAL-819 4321 chrX 22692439 22692482 chrX 22692532 22692585 22 100 5.5 6.5 6.0 3.1 146 chrX 22692439 intron CR44997 + chrX 22692512 intron CR44997 + chrX 22692585 intron CR44997 + chrX_22_22690001 chrX_22690001 RAL-819 4322 chrX 22697478 22697499 chrX 22701800 22701821 Juan 8 4321 16.5 17.5 17.0 0.4 4343 chrX 22697478 intron CR44997 + chrX 22699650 intron CR44997 + chrX 22701821 intron CR44997 + chrX_8_22695001 chrX_22695001 RAL-819 4323 chrX 22697500 22697517 chrX 22701797 22701839 Juan 11 4319 11.5 16.0 13.8 0.7 4339 chrX 22697500 intron CR44997 + chrX 22699670 intron CR44997 + chrX 22701839 intron CR44997 + chrX_11_22695001 chrX_22695001 RAL-819 4324 chrX 22734435 22734451 chrX 22734539 22734555 11 104 5.0 7.0 6.0 1.6 120 chrX 22734435 intron CR44997 + chrX 22734495 intron CR44997 + chrX 22734555 intron CR44997 + chrX_11_22730001 chrX_22730001 RAL-819 4325 chrX 22764349 22764400 chrX 22764470 22764521 37 120 12.0 13.0 12.5 2.7 172 chrX 22764349 intron CR44997 + chrX 22764435 intron CR44997 + chrX 22764521 intron CR44997 + chrX_37_22760001 chrX_22760001 RAL-819 4326 chrX 22771480 22771538 chrX 22774796 22774839 297 25 3308 6.5 12.0 9.2 2.5 3359 chrX 22771480 intron CR44997 + chrX 22773160 intron CR44997 + chrX 22774839 intron CR44997 + chrX_25_22770001 chrX_22770001 RAL-819 4327 chrX 22784047 22784054 chrX 22784168 22784175 5 121 5.5 9.5 7.5 0.6 128 chrX 22784047 intron CR44997 + chrX 22784111 intron CR44997 + chrX 22784175 intron CR44997 + chrX_5_22780001 chrX_22780001 RAL-819 4328 chrX 22798762 22798772 chrX 22798904 22798914 4 142 17.0 4.5 10.8 0.3 152 chrX 22798762 intergenic not near genes chrX 22798838 intergenic not near genes chrX 22798914 intergenic not near genes chrX_4_22795001 chrX_22795001 RAL-819 4329 chrX 22798773 22798801 chrX 22798903 22798943 4 139 8.0 4.5 6.2 0.6 170 chrX 22798773 intergenic not near genes chrX 22798858 intergenic not near genes chrX 22798943 intergenic not near genes chrX_4_22795001 chrX_22795001 RAL-819 4330 chrX 22811976 22812004 chrX 22816773 22816801 F-element 17 4796 24.5 12.5 18.5 0.9 4825 chrX 22811976 intergenic CG12446 - chrX 22814388 intergenic not near genes chrX 22816801 intergenic not near genes chrX_17_22810001 chrX_22810001 RAL-819 4331 chrX 22824220 22824443 chrX 22824371 22824601 49 155 9.5 10.0 9.8 4.5 381 chrX 22824220 intergenic fog - chrX 22824410 3` UTR fog - chrX 22824601 3` UTR fog - chrX_49_22820001 chrX_22820001 RAL-819 4332 chrX 22867959 22868009 chrX 22868091 22868156 22 135 8.5 6.5 7.5 2.6 197 chrX 22867959 exon CG42346 + chrX 22868058 intron CG42346 + chrX 22868156 intron CG42346 + chrX_22_22865001 chrX_22865001 RAL-819 4333 chrX 22870841 22870901 chrX 22870957 22871005 27 111 7.0 12.5 9.8 2.5 164 chrX 22870841 intron,3` UTR CG42346 +,CR43656 - chrX 22870923 intron,3` UTR CG42346 +,CR43656 - chrX 22871005 intron,3` UTR CG42346 +,CR43656 - chrX_27_22870001 chrX_22870001 RAL-819 4334 chrX 22895701 22895759 chrX 22895844 22895902 43 139 7.5 9.5 8.5 4.5 201 chrX 22895701 intergenic not near genes chrX 22895802 intergenic not near genes chrX 22895902 intergenic not near genes chrX_43_22895001 chrX_22895001 RAL-819 4335 chrX 22967365 22967382 chrX 23154541 23154558 diver 9 187176 11.5 30.0 20.8 0.4 187193 chrX 22967365 intergenic not near genes chrX 23060962 intergenic not near genes chrX 23154558 intergenic not near genes chrX_9_23060001 chrX_23060001 RAL-819 4336 chrX 22987081 22987108 chrX 22989765 22989792 Burdock 16 2683 17.5 14.5 16.0 0.9 2711 chrX 22987081 intron,intron stnA -,stnB - chrX 22988436 intron,intron stnA -,stnB - chrX 22989792 intron,intron stnA -,stnB - chrX_16_22985001 chrX_22985001 RAL-819 4337 chrX 22987110 22987132 chrX 22989764 22989816 Burdock 12 2677 10.5 14.5 12.5 0.9 2706 chrX 22987110 intron,intron stnA -,stnB - chrX 22988463 intron,intron stnA -,stnB - chrX 22989816 intron,intron stnA -,stnB - chrX_12_22985001 chrX_22985001 RAL-819 4338 chrX 22996289 22996339 chrX 23003546 23003596 roo 26 7255 9.5 13.0 11.2 2.1 7307 chrX 22996289 intron,intron stnA -,stnB - chrX 22999942 intron,intron stnA -,stnB - chrX 23003596 intron,intron stnA -,stnB - chrX_26_22995001 chrX_22995001 RAL-819 4339 chrX 23036361 23036409 chrX 23037787 23037835 pogo 24 1425 6.5 4.5 5.5 3.7 1474 chrX 23036361 intron CG12061 + chrX 23037098 intron CG12061 + chrX 23037835 intron CG12061 + chrX_24_23035001 chrX_23035001 RAL-819 4340 chrX 23045223 23045250 chrX 23045332 23045359 14 107 17.5 8.5 13.0 1.0 136 chrX 23045223 intron CG12061 + chrX 23045291 intron CG12061 + chrX 23045359 intron CG12061 + chrX_14_23045001 chrX_23045001 RAL-819 4341 chrX 23053464 23053478 chrX 23062408 23062422 diver 10 8944 7.0 12.5 9.8 0.9 8958 chrX 23053464 intergenic not near genes chrX 23057943 intergenic not near genes chrX 23062422 intergenic not near genes chrX_10_23055001 chrX_23055001 RAL-819 4342 chrY 104701 104710 chrY 104832 104841 4 131 7.0 14.0 10.5 0.3 140 chrY 104701 intron kl-5 - chrY 104771 intron kl-5 - chrY 104841 intron kl-5 - chrY_4_100001 chrY_100001 RAL-819 4343 chrY 864695 864738 chrY 864796 864839 13 100 59.0 53.0 56.0 0.2 144 chrY 864695 intergenic not near genes chrY 864767 intergenic not near genes chrY 864839 intergenic not near genes chrY_13_860001 chrY_860001 RAL-819 4344 chrY 975773 975802 chrY 975876 975901 11 109 430.0 435.0 432.5 0.0 128 chrY 975773 intergenic not near genes chrY 975837 intergenic not near genes chrY 975901 intergenic not near genes chrY_11_975001 chrY_975001 RAL-819 4345 chrY 975803 975823 chrY 975873 975949 18 130 409.0 428.5 418.8 0.0 146 chrY 975803 intergenic not near genes chrY 975876 intergenic not near genes chrY 975949 intergenic not near genes chrY_18_975001 chrY_975001 RAL-819 4346 chrY 1419881 1419896 chrY 1420160 1420170 6 278 38.0 28.0 33.0 0.2 289 chrY 1419881 intergenic not near genes chrY 1420026 intergenic not near genes chrY 1420170 intergenic not near genes chrY_6_1420001 chrY_1420001 RAL-819 4347 chrY 1419899 1419903 chrY 1420156 1420182 6 275 35.5 27.0 31.2 0.2 283 chrY 1419899 intergenic not near genes chrY 1420040 intergenic not near genes chrY 1420182 intergenic not near genes chrY_6_1420001 chrY_1420001 RAL-819 4348 chrY 1420638 1420652 chrY 1420739 1420753 9 101 22.5 38.0 30.2 0.3 115 chrY 1420638 intergenic not near genes chrY 1420696 intergenic not near genes chrY 1420753 intergenic not near genes chrY_9_1420001 chrY_1420001 RAL-819 4349 chrY 1420638 1420651 chrY 1420759 1420773 6 121 21.5 40.0 30.8 0.2 135 chrY 1420638 intergenic not near genes chrY 1420706 intergenic not near genes chrY 1420773 intergenic not near genes chrY_6_1420001 chrY_1420001 RAL-819 4350 chrY 1420984 1420995 chrY 1421888 1421899 6 904 28.0 26.0 27.0 0.2 915 chrY 1420984 intergenic not near genes chrY 1421442 intergenic not near genes chrY 1421899 intergenic not near genes chrY_6_1420001 chrY_1420001 RAL-819 4351 chrY 1431371 1431373 chrY 1447432 1447434 Doc 4 16061 12.5 24.0 18.2 0.2 16063 chrY 1431371 intergenic not near genes chrY 1439402 intergenic not near genes chrY 1447434 intergenic not near genes chrY_4_1435001 chrY_1435001 RAL-819 4352 chrY 2761733 2761746 chrY 2761846 2761847 5 110 16.5 17.0 16.8 0.3 114 chrY 2761733 intergenic not near genes chrY 2761790 intergenic not near genes chrY 2761847 intergenic not near genes chrY_5_2760001 chrY_2760001 RAL-819 4353 chrY 3664591 3664619 chrY 3664719 3664747 4 128 3.0 3.0 3.0 1.0 156 chrY 3664591 intergenic CG40948 + chrY 3664669 intergenic CG40948 + chrY 3664747 intergenic CG40948 + chrY_4_3660001 chrY_3660001 RAL-819 4354 chrY 3664968 3665020 chrY 3665095 3665149 7 126 2.5 1.0 1.8 2.5 181 chrY 3664968 intergenic CG40948 + chrY 3665058 intergenic not near genes chrY 3665149 intergenic not near genes chrY_7_3665001 chrY_3665001 RAL-819