SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47146 47177 chr2L 47297 47328 10 151 3.0 2.0 2.5 2.9 182 chr2L 47146 intron Cda5 - chr2L 47237 intron Cda5 - chr2L 47328 intron Cda5 - chr2L_10_45001 chr2L_45001 RAL-818 2 chr2L 47463 47482 chr2L 52568 52587 jockey 5 5105 5.5 4.0 4.8 0.9 5124 chr2L 47463 intron Cda5 - chr2L 50025 intron Cda5 - chr2L 52587 intron Cda5 - chr2L_5_50001 chr2L_50001 RAL-818 3 chr2L 325133 325154 chr2L 325207 325223 7 74 10.0 3.5 6.8 0.9 90 chr2L 325133 intron Plc21C + chr2L 325178 intron Plc21C + chr2L 325223 intron Plc21C + chr2L_7_325001 chr2L_325001 RAL-818 4 chr2L 347890 347919 chr2L 355390 355419 blood 7 7499 1.0 1.5 1.2 3.2 7529 chr2L 347890 3` UTR Plc21C + chr2L 351654 intron Plc21C + chr2L 355419 3` UTR Plc21C + chr2L_7_350001 chr2L_350001 RAL-818 5 chr2L 425683 425707 chr2L 425784 425808 6 101 2.5 0.0 1.2 2.7 125 chr2L 425683 intergenic BBS8 + chr2L 425746 intergenic BBS8 + chr2L 425808 intergenic BBS8 + chr2L_6_425001 chr2L_425001 RAL-818 6 chr2L 504318 504352 chr2L 504394 504428 14 76 2.0 2.0 2.0 4.7 110 chr2L 504318 intron ush + chr2L 504373 intron ush + chr2L 504428 intron ush + chr2L_14_500001 chr2L_500001 RAL-818 7 chr2L 549197 549226 chr2L 549491 549525 13 298 18.5 19.5 19.0 0.7 328 chr2L 549197 intron Ets21C - chr2L 549361 intron Ets21C - chr2L 549525 intron Ets21C - chr2L_13_545001 chr2L_545001 RAL-818 8 chr2L 686918 686951 chr2L 695958 695991 roo 9 9039 1.5 1.5 1.5 3.6 9073 chr2L 686918 intron ds - chr2L 691454 intron ds - chr2L 695991 intron ds - chr2L_9_690001 chr2L_690001 RAL-818 9 chr2L 764566 764592 chr2L 764647 764673 6 81 2.0 1.0 1.5 2.4 107 chr2L 764566 intergenic not near genes chr2L 764620 intergenic not near genes chr2L 764673 intergenic not near genes chr2L_6_760001 chr2L_760001 RAL-818 10 chr2L 798892 798902 chr2L 799201 799211 4 309 3.5 5.0 4.2 0.8 319 chr2L 798892 intergenic not near genes chr2L 799052 intergenic not near genes chr2L 799211 intergenic not near genes chr2L_4_795001 chr2L_795001 RAL-818 11 chr2L 877841 877859 chr2L 877921 877940 14 81 4.0 4.5 4.2 2.7 99 chr2L 877841 3` UTR,exon CG15824 -,ninaA + chr2L 877890 3` UTR,intron CG15824 -,ninaA + chr2L 877940 3` UTR,intron CG15824 -,ninaA + chr2L_14_875001 chr2L_875001 RAL-818 12 chr2L 927856 927879 chr2L 928005 928030 9 150 5.5 1.5 3.5 2.0 174 chr2L 927856 intron CG4341 + chr2L 927943 intron CG4341 + chr2L 928030 intron CG4341 + chr2L_9_925001 chr2L_925001 RAL-818 13 chr2L 976877 976908 chr2L 984513 984544 roo 14 7636 6.0 2.0 4.0 2.8 7667 chr2L 976877 intergenic not near genes chr2L 980710 intergenic not near genes chr2L 984544 intergenic not near genes chr2L_14_980001 chr2L_980001 RAL-818 14 chr2L 1066093 1066128 chr2L 1066173 1066209 19 79 5.0 2.5 3.8 4.0 116 chr2L 1066093 intron S - chr2L 1066151 intron S - chr2L 1066209 intron S - chr2L_19_1065001 chr2L_1065001 RAL-818 15 chr2L 1220132 1220148 chr2L 1227598 1227614 blood 5 7466 4.0 1.5 2.8 1.3 7482 chr2L 1220132 intron CG42329 + chr2L 1223873 intron CG42329 + chr2L 1227614 intron CG42329 + chr2L_5_1220001 chr2L_1220001 RAL-818 16 chr2L 1328214 1328249 chr2L 1328309 1328344 6 88 4.0 3.0 3.5 1.3 130 chr2L 1328214 intergenic not near genes chr2L 1328279 intergenic not near genes chr2L 1328344 intergenic not near genes chr2L_6_1325001 chr2L_1325001 RAL-818 17 chr2L 1491550 1491574 chr2L 1491636 1491668 4 92 2.0 2.0 2.0 1.3 118 chr2L 1491550 intergenic not near genes chr2L 1491609 intergenic not near genes chr2L 1491668 intergenic not near genes chr2L_4_1490001 chr2L_1490001 RAL-818 18 chr2L 1570685 1570710 chr2L 1573556 1573581 F-element 4 2872 3.5 1.5 2.5 1.1 2896 chr2L 1570685 intron haf + chr2L 1572133 intron haf + chr2L 1573581 intron haf + chr2L_4_1570001 chr2L_1570001 RAL-818 19 chr2L 1590968 1590990 chr2L 1591044 1591066 11 76 3.0 3.0 3.0 2.8 98 chr2L 1590968 intron haf + chr2L 1591017 intron haf + chr2L 1591066 intron haf + chr2L_11_1590001 chr2L_1590001 RAL-818 20 chr2L 1678989 1678994 chr2L 1686453 1686459 blood 4 7464 2.0 4.0 3.0 1.0 7470 chr2L 1678989 intron chinmo + chr2L 1682724 intron chinmo + chr2L 1686459 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-818 21 chr2L 1711356 1711387 chr2L 1711678 1711711 mdg3 12 322 2.0 2.5 2.2 3.8 355 chr2L 1711356 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711534 3` UTR frtz - chr2L 1711711 3` UTR frtz - chr2L_12_1710001 chr2L_1710001 RAL-818 22 chr2L 1883437 1883447 chr2L 1884017 1884027 4 580 0.0 4.5 2.2 1.2 590 chr2L 1883437 intron CG15358 - chr2L 1883732 intron CG15358 - chr2L 1884027 exon CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-818 23 chr2L 2100387 2100407 chr2L 2109523 2109548 roo 6 9146 3.5 1.5 2.5 1.7 9161 chr2L 2100387 intron dpr3 - chr2L 2104968 intron dpr3 - chr2L 2109548 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-818 24 chr2L 2236202 2236232 chr2L 2236281 2236311 10 77 2.0 3.0 2.5 2.9 109 chr2L 2236202 intron Sec24CD - chr2L 2236256 intron Sec24CD - chr2L 2236311 exon Sec24CD - chr2L_10_2235001 chr2L_2235001 RAL-818 25 chr2L 2260807 2260837 chr2L 2260893 2260923 9 86 2.5 5.0 3.8 1.9 116 chr2L 2260807 intergenic not near genes chr2L 2260865 intergenic not near genes chr2L 2260923 intergenic not near genes chr2L_9_2260001 chr2L_2260001 RAL-818 26 chr2L 2282985 2283015 chr2L 2283144 2283175 5 160 1.0 3.5 2.2 1.6 190 chr2L 2282985 intergenic not near genes chr2L 2283080 intergenic not near genes chr2L 2283175 intergenic not near genes chr2L_5_2280001 chr2L_2280001 RAL-818 27 chr2L 2294049 2294073 chr2L 2299251 2299277 copia 4 5202 1.0 5.5 3.2 1.0 5228 chr2L 2294049 intergenic not near genes chr2L 2296663 intergenic not near genes chr2L 2299277 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-818 28 chr2L 2372364 2372402 chr2L 2372450 2372482 5 85 0.0 2.5 1.2 2.3 118 chr2L 2372364 intergenic CG3609 - chr2L 2372423 intergenic CG3609 - chr2L 2372482 3` UTR CG3609 - chr2L_5_2370001 chr2L_2370001 RAL-818 29 chr2L 2427381 2427400 chr2L 2427467 2427486 5 86 2.0 4.5 3.2 1.2 105 chr2L 2427381 3` UTR CR44912 - chr2L 2427434 3` UTR CR44912 - chr2L 2427486 3` UTR CR44912 - chr2L_5_2425001 chr2L_2425001 RAL-818 30 chr2L 2480995 2481018 chr2L 2481162 2481183 6 165 2.5 3.5 3.0 1.5 188 chr2L 2480995 intergenic not near genes chr2L 2481089 intergenic not near genes chr2L 2481183 intergenic not near genes chr2L_6_2480001 chr2L_2480001 RAL-818 31 chr2L 2587816 2587848 chr2L 2587895 2587927 10 76 1.5 3.5 2.5 2.9 111 chr2L 2587816 intergenic not near genes chr2L 2587872 intergenic not near genes chr2L 2587927 intergenic not near genes chr2L_10_2585001 chr2L_2585001 RAL-818 32 chr2L 2661222 2661232 chr2L 2663045 2663070 I-element 5 1832 1.0 0.5 0.8 2.8 1848 chr2L 2661222 intergenic not near genes chr2L 2662146 intergenic not near genes chr2L 2663070 intergenic not near genes chr2L_5_2660001 chr2L_2660001 RAL-818 33 chr2L 2698879 2698893 chr2L 2698966 2698977 6 86 1.0 2.5 1.8 2.1 98 chr2L 2698879 intron CG31690 + chr2L 2698928 intron CG31690 + chr2L 2698977 intron CG31690 + chr2L_6_2695001 chr2L_2695001 RAL-818 34 chr2L 2713512 2713546 chr2L 2713611 2713645 11 96 3.0 3.0 3.0 2.8 133 chr2L 2713512 intron CG31690 + chr2L 2713578 intron CG31690 + chr2L 2713645 intron CG31690 + chr2L_11_2710001 chr2L_2710001 RAL-818 35 chr2L 2846260 2846286 chr2L 2846694 2846721 16 433 3.5 3.5 3.5 3.6 461 chr2L 2846260 exon CG3117 - chr2L 2846490 exon CG3117 - chr2L 2846721 exon CG3117 - chr2L_16_2845001 chr2L_2845001 RAL-818 36 chr2L 2898742 2898767 chr2L 2899044 2899069 8 301 2.5 1.0 1.8 2.9 327 chr2L 2898742 intron lilli + chr2L 2898906 intron lilli + chr2L 2899069 intron lilli + chr2L_8_2895001 chr2L_2895001 RAL-818 37 chr2L 2937419 2937445 chr2L 2937496 2937522 4 76 2.0 2.5 2.2 1.2 103 chr2L 2937419 intron lilli + chr2L 2937470 intron lilli + chr2L 2937522 intron lilli + chr2L_4_2935001 chr2L_2935001 RAL-818 38 chr2L 2964630 2964644 chr2L 2964719 2964733 4 88 1.0 3.0 2.0 1.3 103 chr2L 2964630 3` UTR Rbp9 + chr2L 2964682 3` UTR Rbp9 + chr2L 2964733 3` UTR Rbp9 + chr2L_4_2960001 chr2L_2960001 RAL-818 39 chr2L 3049233 3049264 chr2L 3049319 3049350 5 86 0.0 1.5 0.8 2.8 117 chr2L 3049233 intron v(2)k05816 + chr2L 3049292 intron v(2)k05816 + chr2L 3049350 intron v(2)k05816 + chr2L_5_3045001 chr2L_3045001 RAL-818 40 chr2L 3073040 3073061 chr2L 3078239 3078264 copia 10 5202 3.0 3.5 3.2 2.4 5224 chr2L 3073040 intron toc - chr2L 3075652 intron toc - chr2L 3078264 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-818 41 chr2L 3087382 3087413 chr2L 3087490 3087505 4 99 2.5 6.0 4.2 0.8 123 chr2L 3087382 intron toc - chr2L 3087444 intron toc - chr2L 3087505 intron toc - chr2L_4_3085001 chr2L_3085001 RAL-818 42 chr2L 3147275 3147303 chr2L 3147350 3147379 11 76 3.5 2.0 2.8 2.9 104 chr2L 3147275 3` UTR Mad - chr2L 3147327 3` UTR Mad - chr2L 3147379 3` UTR Mad - chr2L_11_3145001 chr2L_3145001 RAL-818 43 chr2L 3191520 3191545 chr2L 3191601 3191626 5 81 1.0 3.0 2.0 1.7 106 chr2L 3191520 intron CG34393 - chr2L 3191573 intron CG34393 - chr2L 3191626 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-818 44 chr2L 3192216 3192224 chr2L 3192327 3192335 4 110 3.0 6.0 4.5 0.7 119 chr2L 3192216 exon CG34393 - chr2L 3192276 intron CG34393 - chr2L 3192335 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-818 45 chr2L 3192228 3192241 chr2L 3192326 3192349 9 107 0.5 6.0 3.2 2.1 121 chr2L 3192228 intron CG34393 - chr2L 3192288 intron CG34393 - chr2L 3192349 intron CG34393 - chr2L_9_3190001 chr2L_3190001 RAL-818 46 chr2L 3251497 3251527 chr2L 3259062 3259092 springer 9 7565 2.5 4.0 3.2 2.1 7595 chr2L 3251497 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259092 intergenic not near genes chr2L_9_3255001 chr2L_3255001 RAL-818 47 chr2L 3286764 3286774 chr2L 3286830 3286852 4 72 1.5 5.0 3.2 1.0 88 chr2L 3286764 intergenic not near genes chr2L 3286808 intergenic not near genes chr2L 3286852 intergenic not near genes chr2L_4_3285001 chr2L_3285001 RAL-818 48 chr2L 3314696 3314721 chr2L 3314773 3314798 9 77 4.0 1.0 2.5 2.6 102 chr2L 3314696 intron CG3277 + chr2L 3314747 intron CG3277 + chr2L 3314798 intron CG3277 + chr2L_9_3310001 chr2L_3310001 RAL-818 49 chr2L 3396595 3396612 chr2L 3396792 3396809 7 197 1.5 2.0 1.8 2.5 214 chr2L 3396595 intergenic not near genes chr2L 3396702 intergenic not near genes chr2L 3396809 intergenic not near genes chr2L_7_3395001 chr2L_3395001 RAL-818 50 chr2L 3497841 3497866 chr2L 3497919 3497944 10 77 4.5 2.0 3.2 2.4 103 chr2L 3497841 intron tim - chr2L 3497892 intron tim - chr2L 3497944 intron tim - chr2L_10_3495001 chr2L_3495001 RAL-818 51 chr2L 3649793 3649806 chr2L 3654995 3655008 copia 4 5201 1.0 5.0 3.0 1.0 5215 chr2L 3649793 intron for - chr2L 3652400 intron for - chr2L 3655008 intron for - chr2L_4_3650001 chr2L_3650001 RAL-818 52 chr2L 3670727 3670764 chr2L 3670809 3670844 8 81 1.5 3.0 2.2 2.5 117 chr2L 3670727 intron CG34340 + chr2L 3670786 intron CG34340 + chr2L 3670844 intron CG34340 + chr2L_8_3670001 chr2L_3670001 RAL-818 53 chr2L 3831849 3831862 chr2L 3831928 3831943 5 80 2.0 2.5 2.2 1.6 94 chr2L 3831849 intergenic not near genes chr2L 3831896 intergenic not near genes chr2L 3831943 intergenic not near genes chr2L_5_3830001 chr2L_3830001 RAL-818 54 chr2L 3959187 3959205 chr2L 3959263 3959281 7 76 3.0 2.0 2.5 2.0 94 chr2L 3959187 intron fred - chr2L 3959234 intron fred - chr2L 3959281 intron fred - chr2L_7_3955001 chr2L_3955001 RAL-818 55 chr2L 4037801 4037808 chr2L 4037888 4037895 4 87 1.5 1.5 1.5 1.6 94 chr2L 4037801 intron ed + chr2L 4037848 intron ed + chr2L 4037895 intron ed + chr2L_4_4035001 chr2L_4035001 RAL-818 56 chr2L 4047083 4047092 chr2L 4047395 4047405 4 313 5.5 0.5 3.0 1.0 322 chr2L 4047083 intron ed + chr2L 4047244 intron ed + chr2L 4047405 intron ed + chr2L_4_4045001 chr2L_4045001 RAL-818 57 chr2L 4048896 4048922 chr2L 4048986 4049008 6 89 0.5 1.0 0.8 3.3 112 chr2L 4048896 intron ed + chr2L 4048952 intron ed + chr2L 4049008 intron ed + chr2L_6_4045001 chr2L_4045001 RAL-818 58 chr2L 4060166 4060200 chr2L 4060242 4060276 6 76 0.0 1.5 0.8 3.3 110 chr2L 4060166 intron ed + chr2L 4060221 intron ed + chr2L 4060276 intron ed + chr2L_6_4060001 chr2L_4060001 RAL-818 59 chr2L 4066048 4066063 chr2L 4068866 4068888 Juan 7 2824 2.5 3.5 3.0 1.8 2840 chr2L 4066048 intron ed + chr2L 4067468 intron ed + chr2L 4068888 intron ed + chr2L_7_4065001 chr2L_4065001 RAL-818 60 chr2L 4154968 4154980 chr2L 4155050 4155062 4 82 5.0 2.0 3.5 0.9 94 chr2L 4154968 intergenic not near genes chr2L 4155015 intergenic not near genes chr2L 4155062 intergenic not near genes chr2L_4_4155001 chr2L_4155001 RAL-818 61 chr2L 4181295 4181302 chr2L 4183927 4183934 Burdock 5 2632 2.5 7.5 5.0 0.8 2639 chr2L 4181295 intergenic not near genes chr2L 4182614 intergenic not near genes chr2L 4183934 intergenic not near genes chr2L_5_4180001 chr2L_4180001 RAL-818 62 chr2L 4236528 4236544 chr2L 4236884 4236901 6 356 2.5 2.5 2.5 1.7 373 chr2L 4236528 intergenic not near genes chr2L 4236714 intergenic not near genes chr2L 4236901 intergenic not near genes chr2L_6_4235001 chr2L_4235001 RAL-818 63 chr2L 4437210 4437243 chr2L 4437290 4437322 5 80 0.0 0.5 0.2 4.2 112 chr2L 4437210 intron CG15431 - chr2L 4437266 intron CG15431 - chr2L 4437322 intron CG15431 - chr2L_5_4435001 chr2L_4435001 RAL-818 64 chr2L 4582764 4582776 chr2L 4582846 4582869 6 88 0.0 8.0 4.0 1.2 105 chr2L 4582764 intron,3` UTR dp -,CR43716 - chr2L 4582816 intron,intron dp -,CR43716 - chr2L 4582869 intron,intron dp -,CR43716 - chr2L_6_4580001 chr2L_4580001 RAL-818 65 chr2L 4601703 4601735 chr2L 4609144 4609176 mdg1 9 7440 3.0 7.0 5.0 1.5 7473 chr2L 4601703 intron dp - chr2L 4605440 intron dp - chr2L 4609176 intron dp - chr2L_9_4605001 chr2L_4605001 RAL-818 66 chr2L 4657561 4657591 chr2L 4657638 4657668 19 77 7.0 2.0 4.5 3.5 107 chr2L 4657561 intergenic not near genes chr2L 4657614 intergenic not near genes chr2L 4657668 intergenic not near genes chr2L_19_4655001 chr2L_4655001 RAL-818 67 chr2L 4953529 4953536 chr2L 4953770 4953777 pogo 4 241 2.5 0.0 1.2 1.8 248 chr2L 4953529 intergenic Jon25Bii - chr2L 4953653 intergenic not near genes chr2L 4953777 intergenic not near genes chr2L_4_4950001 chr2L_4950001 RAL-818 68 chr2L 5027973 5027989 chr2L 5028042 5028073 4 80 0.5 1.5 1.0 2.0 100 chr2L 5027973 intron vkg - chr2L 5028023 intron vkg - chr2L 5028073 intron vkg - chr2L_4_5025001 chr2L_5025001 RAL-818 69 chr2L 5090587 5090591 chr2L 5090919 5090923 5 332 6.0 2.5 4.2 1.0 336 chr2L 5090587 intron pgant5 - chr2L 5090755 intron pgant5 - chr2L 5090923 intron pgant5 - chr2L_5_5090001 chr2L_5090001 RAL-818 70 chr2L 5117305 5117322 chr2L 5117387 5117404 4 82 0.5 0.5 0.5 2.7 99 chr2L 5117305 intron Msp300 + chr2L 5117354 intron Msp300 + chr2L 5117404 intron Msp300 + chr2L_4_5115001 chr2L_5115001 RAL-818 71 chr2L 5147726 5147748 chr2L 5147958 5147975 7 229 1.0 3.0 2.0 2.3 249 chr2L 5147726 intron Msp300 + chr2L 5147850 intron Msp300 + chr2L 5147975 intron Msp300 + chr2L_7_5145001 chr2L_5145001 RAL-818 72 chr2L 5448470 5448490 chr2L 5448567 5448574 5 92 3.0 3.0 3.0 1.2 104 chr2L 5448470 intergenic not near genes chr2L 5448522 intergenic not near genes chr2L 5448574 intergenic not near genes chr2L_5_5445001 chr2L_5445001 RAL-818 73 chr2L 5475157 5475162 chr2L 5475261 5475267 4 105 0.5 2.0 1.2 1.8 110 chr2L 5475157 intergenic not near genes chr2L 5475212 intergenic not near genes chr2L 5475267 intergenic not near genes chr2L_4_5475001 chr2L_5475001 RAL-818 74 chr2L 5676895 5676918 chr2L 5676991 5677014 6 96 1.0 0.5 0.8 3.3 119 chr2L 5676895 intergenic not near genes chr2L 5676954 intergenic not near genes chr2L 5677014 intergenic not near genes chr2L_6_5675001 chr2L_5675001 RAL-818 75 chr2L 5693180 5693200 chr2L 5694002 5694020 10 822 1.5 1.5 1.5 4.0 840 chr2L 5693180 intergenic not near genes chr2L 5693600 intergenic not near genes chr2L 5694020 intergenic not near genes chr2L_10_5690001 chr2L_5690001 RAL-818 76 chr2L 5695864 5695888 chr2L 5695955 5695980 4 91 0.0 1.0 0.5 2.7 116 chr2L 5695864 intergenic not near genes chr2L 5695922 intergenic not near genes chr2L 5695980 intergenic not near genes chr2L_4_5695001 chr2L_5695001 RAL-818 77 chr2L 5758345 5758369 chr2L 5758586 5758612 11 242 2.5 4.5 3.5 2.4 267 chr2L 5758345 intron CG11030 + chr2L 5758478 intron CG11030 + chr2L 5758612 intron CG11030 + chr2L_11_5755001 chr2L_5755001 RAL-818 78 chr2L 5819674 5819705 chr2L 5819758 5819775 5 81 1.0 4.5 2.8 1.3 101 chr2L 5819674 intergenic not near genes chr2L 5819724 intergenic not near genes chr2L 5819775 intergenic not near genes chr2L_5_5815001 chr2L_5815001 RAL-818 79 chr2L 5827711 5827725 chr2L 5836719 5836733 roo 6 9007 6.5 3.5 5.0 1.0 9022 chr2L 5827711 intron TrissinR + chr2L 5832222 intron TrissinR + chr2L 5836733 intron TrissinR + chr2L_6_5830001 chr2L_5830001 RAL-818 80 chr2L 5827731 5827740 chr2L 5836715 5836746 roo 5 9003 6.0 3.0 4.5 0.9 9015 chr2L 5827731 intron TrissinR + chr2L 5832238 intron TrissinR + chr2L 5836746 intron TrissinR + chr2L_5_5830001 chr2L_5830001 RAL-818 81 chr2L 5962289 5962300 chr2L 5962365 5962376 5 76 0.5 1.5 1.0 2.5 87 chr2L 5962289 intergenic not near genes chr2L 5962332 intergenic not near genes chr2L 5962376 intergenic not near genes chr2L_5_5960001 chr2L_5960001 RAL-818 82 chr2L 6300559 6300590 chr2L 6300644 6300676 11 85 2.5 1.0 1.8 3.9 117 chr2L 6300559 intron Ddr + chr2L 6300618 intron Ddr + chr2L 6300676 intron Ddr + chr2L_11_6300001 chr2L_6300001 RAL-818 83 chr2L 6318737 6318760 chr2L 6318891 6318911 7 153 4.5 2.5 3.5 1.6 174 chr2L 6318737 intron Ddr + chr2L 6318824 intron Ddr + chr2L 6318911 intron Ddr + chr2L_7_6315001 chr2L_6315001 RAL-818 84 chr2L 6363149 6363174 chr2L 6366071 6366094 Burdock 7 2921 1.0 1.5 1.2 3.2 2945 chr2L 6363149 intergenic not near genes chr2L 6364622 intergenic not near genes chr2L 6366094 intergenic not near genes chr2L_7_6360001 chr2L_6360001 RAL-818 85 chr2L 6380060 6380093 chr2L 6380141 6380174 9 81 1.5 3.5 2.5 2.6 114 chr2L 6380060 intron CG42368 - chr2L 6380117 intron CG42368 - chr2L 6380174 intron CG42368 - chr2L_9_6380001 chr2L_6380001 RAL-818 86 chr2L 6426854 6426883 chr2L 6445114 6445123 roo 13 18258 4.5 3.5 4.0 2.6 18269 chr2L 6426854 3` UTR CG9527 - chr2L 6435988 intron CG9527 - chr2L 6445123 exon CG9527 - chr2L_13_6435001 chr2L_6435001 RAL-818 87 chr2L 6520905 6520934 chr2L 6520999 6521028 9 94 2.5 4.5 3.5 2.0 123 chr2L 6520905 intron CG31637 + chr2L 6520966 intron CG31637 + chr2L 6521028 intron CG31637 + chr2L_9_6520001 chr2L_6520001 RAL-818 88 chr2L 6537178 6537197 chr2L 6537320 6537337 4 142 0.5 3.0 1.8 1.4 159 chr2L 6537178 intron eya - chr2L 6537258 intron eya - chr2L 6537337 intron eya - chr2L_4_6535001 chr2L_6535001 RAL-818 89 chr2L 6544376 6544388 chr2L 6544468 6544480 6 92 0.0 2.0 1.0 3.0 104 chr2L 6544376 intron eya - chr2L 6544428 intron eya - chr2L 6544480 intron eya - chr2L_6_6540001 chr2L_6540001 RAL-818 90 chr2L 6564856 6564877 chr2L 6564949 6564969 5 93 0.0 1.0 0.5 3.3 113 chr2L 6564856 3` UTR CG13766 - chr2L 6564912 3` UTR CG13766 - chr2L 6564969 3` UTR CG13766 - chr2L_5_6560001 chr2L_6560001 RAL-818 91 chr2L 6598121 6598146 chr2L 6599076 6599103 5 957 2.0 3.5 2.8 1.3 982 chr2L 6598121 intron CG11319 - chr2L 6598612 intron CG11319 - chr2L 6599103 intron CG11319 - chr2L_5_6595001 chr2L_6595001 RAL-818 92 chr2L 6640906 6640931 chr2L 6641001 6641016 4 91 5.0 3.5 4.2 0.8 110 chr2L 6640906 exon CG31635 - chr2L 6640961 intron CG31635 - chr2L 6641016 intron CG31635 - chr2L_4_6640001 chr2L_6640001 RAL-818 93 chr2L 6799535 6799572 chr2L 6799623 6799660 8 87 1.5 0.5 1.0 4.0 125 chr2L 6799535 5` UTR CR43610 + chr2L 6799598 5` UTR CR43610 + chr2L 6799660 intergenic CR43610 +,CG17376 - chr2L_8_6795001 chr2L_6795001 RAL-818 94 chr2L 7051155 7051162 chr2L 7051231 7051238 7 76 0.0 1.5 0.8 3.9 83 chr2L 7051155 intron milt + chr2L 7051196 intron milt + chr2L 7051238 intron milt + chr2L_7_7050001 chr2L_7050001 RAL-818 95 chr2L 7111757 7111788 chr2L 7111842 7111874 5 86 2.0 0.0 1.0 2.5 117 chr2L 7111757 intron Pvf3 - chr2L 7111816 intron Pvf3 - chr2L 7111874 intron Pvf3 - chr2L_5_7110001 chr2L_7110001 RAL-818 96 chr2L 7198000 7198022 chr2L 7198079 7198101 6 79 4.5 4.0 4.2 1.2 101 chr2L 7198000 intron CG4502 - chr2L 7198050 intron CG4502 - chr2L 7198101 intron CG4502 - chr2L_6_7195001 chr2L_7195001 RAL-818 97 chr2L 7258488 7258511 chr2L 7258663 7258686 6 175 1.0 1.5 1.2 2.7 198 chr2L 7258488 intron Wnt4 - chr2L 7258587 intron Wnt4 - chr2L 7258686 intron Wnt4 - chr2L_6_7255001 chr2L_7255001 RAL-818 98 chr2L 7291593 7291625 chr2L 7291698 7291731 11 106 4.0 3.0 3.5 2.4 138 chr2L 7291593 intergenic not near genes chr2L 7291662 intergenic not near genes chr2L 7291731 intergenic not near genes chr2L_11_7290001 chr2L_7290001 RAL-818 99 chr2L 7295995 7296024 chr2L 7296133 7296164 5 139 2.0 1.0 1.5 2.0 169 chr2L 7295995 intergenic not near genes chr2L 7296080 intergenic not near genes chr2L 7296164 intergenic not near genes chr2L_5_7295001 chr2L_7295001 RAL-818 100 chr2L 7301298 7301326 chr2L 7301381 7301408 10 81 3.5 4.0 3.8 2.1 110 chr2L 7301298 intergenic not near genes chr2L 7301353 intergenic not near genes chr2L 7301408 intergenic not near genes chr2L_10_7300001 chr2L_7300001 RAL-818 101 chr2L 7343324 7343356 chr2L 7350440 7350472 roo 4 7116 2.0 6.0 4.0 0.8 7148 chr2L 7343324 intron Wnt6 + chr2L 7346898 intron Wnt6 + chr2L 7350472 intron Wnt6 + chr2L_4_7345001 chr2L_7345001 RAL-818 102 chr2L 7399305 7399331 chr2L 7399678 7399704 4 373 1.5 3.5 2.5 1.1 399 chr2L 7399305 intergenic not near genes chr2L 7399504 intergenic not near genes chr2L 7399704 intergenic not near genes chr2L_4_7395001 chr2L_7395001 RAL-818 103 chr2L 7439943 7439965 chr2L 7440354 7440368 7 410 1.0 0.5 0.8 3.9 425 chr2L 7439943 intron CG5973 + chr2L 7440156 intron CG5973 + chr2L 7440368 intron CG5973 + chr2L_7_7440001 chr2L_7440001 RAL-818 104 chr2L 7664919 7664946 chr2L 7665125 7665152 7 204 16.0 16.5 16.2 0.4 233 chr2L 7664919 intron Slob - chr2L 7665036 intron Slob - chr2L 7665152 intron Slob - chr2L_7_7665001 chr2L_7665001 RAL-818 105 chr2L 7664804 7664839 chr2L 7666180 7666215 10 1377 25.0 21.0 23.0 0.4 1411 chr2L 7664804 intron Slob - chr2L 7665510 intron Slob - chr2L 7666215 intron,intron Slob -,Myo28B1 + chr2L_10_7665001 chr2L_7665001 RAL-818 106 chr2L 7744999 7745021 chr2L 7746133 7746151 4 1132 3.0 1.0 2.0 1.3 1152 chr2L 7744999 intergenic CG7214 - chr2L 7745575 intergenic not near genes chr2L 7746151 intergenic not near genes chr2L_4_7745001 chr2L_7745001 RAL-818 107 chr2L 7861311 7861326 chr2L 7861414 7861428 6 104 3.0 0.0 1.5 2.4 117 chr2L 7861311 intergenic TwdlE - chr2L 7861370 intergenic not near genes chr2L 7861428 intergenic not near genes chr2L_6_7860001 chr2L_7860001 RAL-818 108 chr2L 7922745 7922775 chr2L 7922826 7922856 11 81 2.0 1.0 1.5 4.4 111 chr2L 7922745 intron Snoo - chr2L 7922800 intron Snoo - chr2L 7922856 intron Snoo - chr2L_11_7920001 chr2L_7920001 RAL-818 109 chr2L 7959043 7959053 chr2L 7960452 7960463 pogo 5 1410 6.0 4.0 5.0 0.8 1420 chr2L 7959043 intron Snoo - chr2L 7959753 intron Snoo - chr2L 7960463 intron Snoo - chr2L_5_7955001 chr2L_7955001 RAL-818 110 chr2L 7965875 7965900 chr2L 7965957 7965970 9 81 1.5 0.5 1.0 4.5 95 chr2L 7965875 intron Snoo - chr2L 7965922 intron Snoo - chr2L 7965970 intron Snoo - chr2L_9_7965001 chr2L_7965001 RAL-818 111 chr2L 7977092 7977113 chr2L 7984065 7984088 297 11 6975 0.5 2.0 1.2 5.0 6996 chr2L 7977092 intron Snoo - chr2L 7980590 intron Snoo - chr2L 7984088 intron,5` UTR Snoo -,CG7231 + chr2L_11_7980001 chr2L_7980001 RAL-818 112 chr2L 8013614 8013632 chr2L 8018819 8018837 copia 7 5205 2.0 0.0 1.0 3.5 5223 chr2L 8013614 intron Tg + chr2L 8016226 intron Tg + chr2L 8018837 intron Tg + chr2L_7_8015001 chr2L_8015001 RAL-818 113 chr2L 8018821 8018832 chr2L 8023605 8023616 Doc 4 4784 0.0 0.5 0.2 3.3 4795 chr2L 8018821 intron Tg + chr2L 8021218 intron Tg + chr2L 8023616 intron Tg + chr2L_4_8020001 chr2L_8020001 RAL-818 114 chr2L 8034424 8034456 chr2L 8034517 8034550 11 93 5.0 2.5 3.8 2.3 126 chr2L 8034424 intron,intron CG7367 -,Cka + chr2L 8034487 intron,intron CG7367 -,Cka + chr2L 8034550 intron,intron CG7367 -,Cka + chr2L_11_8030001 chr2L_8030001 RAL-818 115 chr2L 8044101 8044129 chr2L 8044180 8044208 8 79 4.5 3.0 3.8 1.7 107 chr2L 8044101 intron CG7466 + chr2L 8044154 intron CG7466 + chr2L 8044208 intron CG7466 + chr2L_8_8040001 chr2L_8040001 RAL-818 116 chr2L 8171278 8171289 chr2L 8171358 8171370 5 80 0.0 0.0 0.0 5.0 92 chr2L 8171278 intron Piezo + chr2L 8171324 intron Piezo + chr2L 8171370 intron Piezo + chr2L_5_8170001 chr2L_8170001 RAL-818 117 chr2L 8244732 8244749 chr2L 8244854 8244871 7 122 0.5 2.5 1.5 2.8 139 chr2L 8244732 intron CG8086 - chr2L 8244802 intron CG8086 - chr2L 8244871 intron CG8086 - chr2L_7_8240001 chr2L_8240001 RAL-818 118 chr2L 8266207 8266229 chr2L 8266339 8266363 4 134 1.5 0.5 1.0 2.0 156 chr2L 8266207 intron Btk29A - chr2L 8266285 intron Btk29A - chr2L 8266363 intron Btk29A - chr2L_4_8265001 chr2L_8265001 RAL-818 119 chr2L 8452428 8452452 chr2L 8461599 8461623 roo 5 9171 1.5 2.0 1.8 1.8 9195 chr2L 8452428 intron fu12 - chr2L 8457026 intron fu12 - chr2L 8461623 intron fu12 - chr2L_5_8455001 chr2L_8455001 RAL-818 120 chr2L 8498204 8498234 chr2L 8498285 8498315 8 81 2.0 2.0 2.0 2.7 111 chr2L 8498204 intron Dh31 - chr2L 8498260 intron Dh31 - chr2L 8498315 intron Dh31 - chr2L_8_8495001 chr2L_8495001 RAL-818 121 chr2L 8535066 8535095 chr2L 8535169 8535200 13 104 2.5 1.0 1.8 4.6 134 chr2L 8535066 intron CG17834 + chr2L 8535133 intron CG17834 + chr2L 8535200 intron CG17834 + chr2L_13_8535001 chr2L_8535001 RAL-818 122 chr2L 8588551 8588570 chr2L 8588642 8588660 5 90 8.0 7.5 7.8 0.6 109 chr2L 8588551 intron Sema-1a + chr2L 8588606 intron Sema-1a + chr2L 8588660 intron Sema-1a + chr2L_5_8585001 chr2L_8585001 RAL-818 123 chr2L 8604967 8605001 chr2L 8605065 8605099 6 98 1.5 2.5 2.0 2.0 132 chr2L 8604967 intron Sema-1a + chr2L 8605033 intron Sema-1a + chr2L 8605099 intron Sema-1a + chr2L_6_8605001 chr2L_8605001 RAL-818 124 chr2L 8689703 8689734 chr2L 8689800 8689831 11 97 3.5 3.0 3.2 2.6 128 chr2L 8689703 intron Hnf4 - chr2L 8689767 intron Hnf4 - chr2L 8689831 exon Hnf4 - chr2L_11_8685001 chr2L_8685001 RAL-818 125 chr2L 8719215 8719330 chr2L 8719292 8719460 8 127 1.5 1.5 1.5 3.2 245 chr2L 8719215 intron raw - chr2L 8719338 intron raw - chr2L 8719460 intron raw - chr2L_8_8715001 chr2L_8715001 RAL-818 126 chr2L 8723116 8723146 chr2L 8731493 8731523 Tirant 7 8377 2.0 2.5 2.2 2.2 8407 chr2L 8723116 intron raw - chr2L 8727320 intron raw - chr2L 8731523 intron raw - chr2L_7_8725001 chr2L_8725001 RAL-818 127 chr2L 8742773 8742938 chr2L 8742849 8743016 4 76 0.0 0.0 0.0 4.0 243 chr2L 8742773 intergenic not near genes chr2L 8742894 intergenic not near genes chr2L 8743016 intergenic not near genes chr2L_4_8740001 chr2L_8740001 RAL-818 128 chr2L 8841030 8841052 chr2L 8841113 8841124 5 81 0.0 6.5 3.2 1.2 94 chr2L 8841030 intergenic not near genes chr2L 8841077 intergenic not near genes chr2L 8841124 intergenic not near genes chr2L_5_8840001 chr2L_8840001 RAL-818 129 chr2L 8910726 8910744 chr2L 8910817 8910835 5 90 2.0 3.0 2.5 1.4 109 chr2L 8910726 intron CG34398 + chr2L 8910780 intron CG34398 + chr2L 8910835 intron CG34398 + chr2L_5_8910001 chr2L_8910001 RAL-818 130 chr2L 8993213 8993244 chr2L 8993314 8993346 8 103 31.5 26.5 29.0 0.3 133 chr2L 8993213 exon CG9555 + chr2L 8993280 exon CG9555 + chr2L 8993346 3` UTR CG9555 + chr2L_8_8990001 chr2L_8990001 RAL-818 131 chr2L 9000292 9000309 chr2L 9007802 9007819 roo 7 7509 1.5 2.5 2.0 2.3 7527 chr2L 9000292 intergenic Try29F + chr2L 9004056 intergenic not near genes chr2L 9007819 intergenic not near genes chr2L_7_9000001 chr2L_9000001 RAL-818 132 chr2L 9040894 9040913 chr2L 9040970 9040986 7 75 3.0 2.5 2.8 1.8 92 chr2L 9040894 intergenic not near genes chr2L 9040940 intergenic not near genes chr2L 9040986 intergenic not near genes chr2L_7_9040001 chr2L_9040001 RAL-818 133 chr2L 9084336 9084340 chr2L 16217660 16217660 13 7133321 11.0 16.0 13.5 0.9 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_13_12650001 chr2L_12650001 RAL-818 134 chr2L 9217971 9217994 chr2L 9222754 9222781 Doc 4 4786 2.5 4.0 3.2 1.0 4810 chr2L 9217971 intron tai + chr2L 9220376 intron tai + chr2L 9222781 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-818 135 chr2L 9270747 9270765 chr2L 9270830 9270860 6 90 7.5 3.0 5.2 1.0 113 chr2L 9270747 intron Ggamma30A + chr2L 9270804 intron Ggamma30A + chr2L 9270860 intron Ggamma30A + chr2L_6_9270001 chr2L_9270001 RAL-818 136 chr2L 9297379 9297405 chr2L 9297456 9297482 11 77 3.0 3.0 3.0 2.8 103 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297430 3` UTR Ggamma30A + chr2L 9297482 3` UTR Ggamma30A + chr2L_11_9295001 chr2L_9295001 RAL-818 137 chr2L 9380243 9380254 chr2L 9380338 9380348 4 95 3.5 2.5 3.0 1.0 105 chr2L 9380243 exon Shawl - chr2L 9380296 intron Shawl - chr2L 9380348 intron Shawl - chr2L_4_9380001 chr2L_9380001 RAL-818 138 chr2L 9393497 9393521 chr2L 9396464 9396488 jockey 5 2966 3.0 4.5 3.8 1.0 2991 chr2L 9393497 intron Shawl - chr2L 9394992 intron Shawl - chr2L 9396488 intron Shawl - chr2L_5_9390001 chr2L_9390001 RAL-818 139 chr2L 9423189 9423213 chr2L 9423267 9423291 5 77 2.5 2.0 2.2 1.6 102 chr2L 9423189 intron Mco1 + chr2L 9423240 intron Mco1 + chr2L 9423291 intron Mco1 + chr2L_5_9420001 chr2L_9420001 RAL-818 140 chr2L 9456930 9456955 chr2L 9457011 9457036 8 80 0.0 3.0 1.5 3.2 106 chr2L 9456930 intron numb + chr2L 9456983 intron numb + chr2L 9457036 intron numb + chr2L_8_9455001 chr2L_9455001 RAL-818 141 chr2L 9490525 9490550 chr2L 9490602 9490630 8 79 0.5 5.5 3.0 2.0 105 chr2L 9490525 intergenic not near genes chr2L 9490578 intergenic not near genes chr2L 9490630 intergenic not near genes chr2L_8_9490001 chr2L_9490001 RAL-818 142 chr2L 9704849 9704863 chr2L 9704955 9704969 10 105 1.5 3.5 2.5 2.9 120 chr2L 9704849 intron,intron pelo +,CG31710 - chr2L 9704909 intron,intron pelo +,CG31710 - chr2L 9704969 intron,intron pelo +,CG31710 - chr2L_10_9700001 chr2L_9700001 RAL-818 143 chr2L 9730982 9731005 chr2L 9731065 9731086 8 82 0.5 4.0 2.2 2.5 104 chr2L 9730982 intron Nckx30C - chr2L 9731034 intron Nckx30C - chr2L 9731086 intron Nckx30C - chr2L_8_9730001 chr2L_9730001 RAL-818 144 chr2L 9871549 9871564 chr2L 9871637 9871652 4 88 2.0 0.5 1.2 1.8 103 chr2L 9871549 intron nAChRalpha6 - chr2L 9871600 intron nAChRalpha6 - chr2L 9871652 intron nAChRalpha6 - chr2L_4_9870001 chr2L_9870001 RAL-818 145 chr2L 9973725 9973744 chr2L 9980844 9980863 HMS-Beagle 5 7119 7.0 3.0 5.0 0.8 7138 chr2L 9973725 intergenic not near genes chr2L 9977294 intergenic not near genes chr2L 9980863 intergenic not near genes chr2L_5_9975001 chr2L_9975001 RAL-818 146 chr2L 10023075 10023102 chr2L 10023159 10023187 10 85 1.5 2.0 1.8 3.6 112 chr2L 10023075 intergenic not near genes chr2L 10023131 intergenic not near genes chr2L 10023187 intergenic not near genes chr2L_10_10020001 chr2L_10020001 RAL-818 147 chr2L 10045416 10045429 chr2L 10045495 10045505 4 78 3.0 3.0 3.0 1.0 89 chr2L 10045416 intergenic not near genes chr2L 10045460 intergenic not near genes chr2L 10045505 intergenic not near genes chr2L_4_10045001 chr2L_10045001 RAL-818 148 chr2L 10095633 10095646 chr2L 10095713 10095721 5 79 3.5 2.0 2.8 1.3 88 chr2L 10095633 intron CG44153 - chr2L 10095677 intron CG44153 - chr2L 10095721 intron CG44153 - chr2L_5_10095001 chr2L_10095001 RAL-818 149 chr2L 10136240 10136256 chr2L 10136321 10136321 6 79 2.5 0.5 1.5 2.4 81 chr2L 10136240 intron CG44153 - chr2L 10136280 intron CG44153 - chr2L 10136321 intron CG44153 - chr2L_6_10135001 chr2L_10135001 RAL-818 150 chr2L 10149613 10149628 chr2L 10149692 10149700 5 77 1.0 3.0 2.0 1.7 87 chr2L 10149613 intron,intron CG44153 -,CG4839 + chr2L 10149656 intron,intron CG44153 -,CG4839 + chr2L 10149700 intron,intron CG44153 -,CG4839 + chr2L_5_10145001 chr2L_10145001 RAL-818 151 chr2L 10153208 10153233 chr2L 10153280 10153312 14 77 0.5 2.5 1.5 5.6 104 chr2L 10153208 intron,exon CG44153 -,CG4839 + chr2L 10153260 intron,intron CG44153 -,CG4839 + chr2L 10153312 intron,intron CG44153 -,CG4839 + chr2L_14_10150001 chr2L_10150001 RAL-818 152 chr2L 10156328 10156355 chr2L 10163798 10163825 blood 9 7469 4.5 6.5 5.5 1.4 7497 chr2L 10156328 intron,3` UTR CG44153 -,CG4839 + chr2L 10160076 intron CG44153 - chr2L 10163825 intron CG44153 - chr2L_9_10160001 chr2L_10160001 RAL-818 153 chr2L 10480311 10480335 chr2L 10480389 10480413 12 78 0.5 0.0 0.2 10.0 102 chr2L 10480311 intron RluA-2 + chr2L 10480362 intron RluA-2 + chr2L 10480413 intron RluA-2 + chr2L_12_10480001 chr2L_10480001 RAL-818 154 chr2L 10490275 10490309 chr2L 10490357 10490386 11 81 7.0 5.0 6.0 1.6 111 chr2L 10490275 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490330 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490386 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_11_10490001 chr2L_10490001 RAL-818 155 chr2L 10480694 10480722 chr2L 10490617 10490645 8 9923 7.0 24.0 15.5 0.5 9951 chr2L 10480694 intron RluA-2 + chr2L 10485670 exon,3` UTR Grip75 +,CG7456 - chr2L 10490645 exon CG13144 - chr2L_8_10485001 chr2L_10485001 RAL-818 156 chr2L 10572699 10572733 chr2L 10572780 10572814 9 80 2.5 1.0 1.8 3.2 115 chr2L 10572699 intron Trim9 + chr2L 10572756 intron Trim9 + chr2L 10572814 intron Trim9 + chr2L_9_10570001 chr2L_10570001 RAL-818 157 chr2L 10633353 10633384 chr2L 10633440 10633457 4 83 1.0 3.0 2.0 1.3 104 chr2L 10633353 intron CG7329 - chr2L 10633405 intron CG7329 - chr2L 10633457 intron CG7329 - chr2L_4_10630001 chr2L_10630001 RAL-818 158 chr2L 10647598 10647608 chr2L 10647723 10647733 4 125 10.5 16.0 13.2 0.3 135 chr2L 10647598 exon CG17097 + chr2L 10647666 exon CG17097 + chr2L 10647733 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-818 159 chr2L 10661593 10661605 chr2L 10661661 10661689 5 79 2.5 2.0 2.2 1.6 96 chr2L 10661593 intergenic CG31871 + chr2L 10661641 intergenic CG31871 + chr2L 10661689 intergenic CG31871 + chr2L_5_10660001 chr2L_10660001 RAL-818 160 chr2L 10682291 10682301 chr2L 10682989 10682999 4 698 0.0 3.0 1.5 1.6 708 chr2L 10682291 3` UTR CG17107 + chr2L 10682645 intergenic CG17107 + chr2L 10682999 intergenic CG7299 -,CG17107 + chr2L_4_10680001 chr2L_10680001 RAL-818 161 chr2L 10762418 10762429 chr2L 10762495 10762506 6 77 1.5 2.5 2.0 2.0 88 chr2L 10762418 intron CG6495 + chr2L 10762462 intron CG6495 + chr2L 10762506 intron CG6495 + chr2L_6_10760001 chr2L_10760001 RAL-818 162 chr2L 10862852 10862874 chr2L 10864456 10864472 Rt1c 4 1602 3.0 1.5 2.2 1.2 1620 chr2L 10862852 3` UTR CR43807 - chr2L 10863662 intron CR43807 - chr2L 10864472 3` UTR CR43807 - chr2L_4_10860001 chr2L_10860001 RAL-818 163 chr2L 10919802 10919819 chr2L 10919889 10919908 8 89 1.5 2.0 1.8 2.9 106 chr2L 10919802 intron dpr2 - chr2L 10919855 intron dpr2 - chr2L 10919908 intron dpr2 - chr2L_8_10915001 chr2L_10915001 RAL-818 164 chr2L 10938178 10938189 chr2L 10938291 10938302 4 112 3.0 2.0 2.5 1.1 124 chr2L 10938178 intron dpr2 - chr2L 10938240 intron dpr2 - chr2L 10938302 intron dpr2 - chr2L_4_10935001 chr2L_10935001 RAL-818 165 chr2L 10946950 10946959 chr2L 10956165 10956174 roo 4 9215 4.5 4.5 4.5 0.7 9224 chr2L 10946950 intron dpr2 - chr2L 10951562 intron dpr2 - chr2L 10956174 intron dpr2 - chr2L_4_10950001 chr2L_10950001 RAL-818 166 chr2L 10946965 10946975 chr2L 10956157 10956190 roo 6 9211 2.5 4.0 3.2 1.4 9225 chr2L 10946965 intron dpr2 - chr2L 10951578 intron dpr2 - chr2L 10956190 intron dpr2 - chr2L_6_10950001 chr2L_10950001 RAL-818 167 chr2L 11084327 11084357 chr2L 11084705 11084735 6 377 4.0 2.0 3.0 1.5 408 chr2L 11084327 exon AstCC - chr2L 11084531 intron AstCC - chr2L 11084735 intron AstCC - chr2L_6_11080001 chr2L_11080001 RAL-818 168 chr2L 11121263 11121291 chr2L 11121341 11121369 11 78 3.5 4.5 4.0 2.2 106 chr2L 11121263 exon CG14921 - chr2L 11121316 intron CG14921 - chr2L 11121369 intron CG14921 - chr2L_11_11120001 chr2L_11120001 RAL-818 169 chr2L 11224058 11224091 chr2L 11224169 11224202 7 111 2.5 1.0 1.8 2.5 144 chr2L 11224058 intron ab + chr2L 11224130 intron ab + chr2L 11224202 intron ab + chr2L_7_11220001 chr2L_11220001 RAL-818 170 chr2L 11248570 11248587 chr2L 11248653 11248668 6 82 8.0 3.5 5.8 0.9 98 chr2L 11248570 intron ab + chr2L 11248619 intron ab + chr2L 11248668 intron ab + chr2L_6_11245001 chr2L_11245001 RAL-818 171 chr2L 11354354 11354357 chr2L 11354416 11354417 4 70 1.0 1.5 1.2 1.8 63 chr2L 11354354 intergenic CR44586 + chr2L 11354386 intergenic CR44586 + chr2L 11354417 intergenic CR44586 + chr2L_4_11350001 chr2L_11350001 RAL-818 172 chr2L 11360426 11360459 chr2L 11360512 11360544 11 85 0.0 1.5 0.8 6.1 118 chr2L 11360426 intron salr + chr2L 11360485 intron salr + chr2L 11360544 intron salr + chr2L_11_11360001 chr2L_11360001 RAL-818 173 chr2L 11380618 11380635 chr2L 11380695 11380712 5 77 1.0 1.5 1.2 2.3 94 chr2L 11380618 intergenic not near genes chr2L 11380665 intergenic not near genes chr2L 11380712 intergenic not near genes chr2L_5_11380001 chr2L_11380001 RAL-818 174 chr2L 11404787 11404810 chr2L 11404863 11404886 12 76 0.5 1.5 1.0 6.0 99 chr2L 11404787 intergenic not near genes chr2L 11404836 intergenic not near genes chr2L 11404886 intergenic not near genes chr2L_12_11400001 chr2L_11400001 RAL-818 175 chr2L 11418665 11418682 chr2L 11418743 11418758 4 78 3.0 3.0 3.0 1.0 93 chr2L 11418665 intergenic not near genes chr2L 11418712 intergenic not near genes chr2L 11418758 intergenic not near genes chr2L_4_11415001 chr2L_11415001 RAL-818 176 chr2L 11433611 11433641 chr2L 11433690 11433720 10 78 2.0 5.0 3.5 2.2 109 chr2L 11433611 intergenic not near genes chr2L 11433666 intergenic not near genes chr2L 11433720 intergenic not near genes chr2L_10_11430001 chr2L_11430001 RAL-818 177 chr2L 11458953 11458977 chr2L 11459069 11459093 5 116 1.0 2.0 1.5 2.0 140 chr2L 11458953 intergenic not near genes chr2L 11459023 intergenic not near genes chr2L 11459093 intergenic not near genes chr2L_5_11455001 chr2L_11455001 RAL-818 178 chr2L 11478842 11478862 chr2L 11479212 11479230 8 368 2.0 1.5 1.8 2.9 388 chr2L 11478842 intergenic not near genes chr2L 11479036 intergenic not near genes chr2L 11479230 intergenic not near genes chr2L_8_11475001 chr2L_11475001 RAL-818 179 chr2L 11537985 11537992 chr2L 11538075 11538085 5 91 2.0 3.0 2.5 1.4 100 chr2L 11537985 intergenic not near genes chr2L 11538035 intergenic not near genes chr2L 11538085 intergenic not near genes chr2L_5_11535001 chr2L_11535001 RAL-818 180 chr2L 11563653 11563668 chr2L 11568857 11568871 copia 7 5204 2.0 4.0 3.0 1.8 5218 chr2L 11563653 intergenic not near genes chr2L 11566262 intergenic not near genes chr2L 11568871 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-818 181 chr2L 11570253 11570265 chr2L 11570650 11570661 6 397 5.0 2.5 3.8 1.2 408 chr2L 11570253 intergenic not near genes chr2L 11570457 intergenic not near genes chr2L 11570661 intergenic not near genes chr2L_6_11570001 chr2L_11570001 RAL-818 182 chr2L 11672145 11672164 chr2L 11672252 11672271 4 107 1.0 1.0 1.0 2.0 126 chr2L 11672145 intergenic not near genes chr2L 11672208 intergenic not near genes chr2L 11672271 intergenic not near genes chr2L_4_11670001 chr2L_11670001 RAL-818 183 chr2L 11704632 11704651 chr2L 11704708 11704712 5 70 3.0 0.0 1.5 2.0 80 chr2L 11704632 intergenic not near genes chr2L 11704672 intergenic not near genes chr2L 11704712 intergenic not near genes chr2L_5_11700001 chr2L_11700001 RAL-818 184 chr2L 11713514 11713534 chr2L 11720982 11721002 blood 7 7468 4.5 4.0 4.2 1.3 7488 chr2L 11713514 intergenic not near genes chr2L 11717258 intergenic not near genes chr2L 11721002 intergenic CR44143 + chr2L_7_11715001 chr2L_11715001 RAL-818 185 chr2L 11757401 11757419 chr2L 11757506 11757525 9 104 0.0 5.5 2.8 2.4 124 chr2L 11757401 intergenic not near genes chr2L 11757463 intergenic not near genes chr2L 11757525 intergenic not near genes chr2L_9_11755001 chr2L_11755001 RAL-818 186 chr2L 11870948 11870962 chr2L 11871026 11871040 5 78 0.5 2.0 1.2 2.3 92 chr2L 11870948 intron Pde1c - chr2L 11870994 intron Pde1c - chr2L 11871040 intron Pde1c - chr2L_5_11870001 chr2L_11870001 RAL-818 187 chr2L 11931966 11932000 chr2L 11932045 11932080 11 79 3.0 2.5 2.8 2.9 114 chr2L 11931966 intergenic not near genes chr2L 11932023 intergenic not near genes chr2L 11932080 intergenic not near genes chr2L_11_11930001 chr2L_11930001 RAL-818 188 chr2L 11954078 11954092 chr2L 11954230 11954244 6 152 3.5 0.0 1.8 2.1 166 chr2L 11954078 3` UTR CR43314 - chr2L 11954161 3` UTR CR43314 - chr2L 11954244 3` UTR CR43314 - chr2L_6_11950001 chr2L_11950001 RAL-818 189 chr2L 11976092 11976118 chr2L 11976169 11976195 12 76 3.0 1.0 2.0 4.0 103 chr2L 11976092 intergenic not near genes chr2L 11976144 intergenic not near genes chr2L 11976195 intergenic not near genes chr2L_12_11975001 chr2L_11975001 RAL-818 190 chr2L 12141960 12142161 chr2L 12142043 12142252 14 85 1.5 1.5 1.5 5.6 292 chr2L 12141960 intergenic not near genes chr2L 12142106 intergenic not near genes chr2L 12142252 intergenic not near genes chr2L_14_12140001 chr2L_12140001 RAL-818 191 chr2L 12234032 12234066 chr2L 12234127 12234161 9 94 2.5 3.0 2.8 2.4 129 chr2L 12234032 intron aret + chr2L 12234096 intron aret + chr2L 12234161 intron aret + chr2L_9_12230001 chr2L_12230001 RAL-818 192 chr2L 12471135 12471140 chr2L 12471211 12471216 5 76 2.5 4.0 3.2 1.2 81 chr2L 12471135 intron bun - chr2L 12471176 intron bun - chr2L 12471216 intron bun - chr2L_5_12470001 chr2L_12470001 RAL-818 193 chr2L 12487890 12487917 chr2L 12487971 12487984 5 77 4.5 1.5 3.0 1.2 94 chr2L 12487890 intron bun - chr2L 12487937 intron bun - chr2L 12487984 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-818 194 chr2L 12515046 12515063 chr2L 12515130 12515147 7 84 1.0 3.5 2.2 2.2 101 chr2L 12515046 intron bun - chr2L 12515096 intron bun - chr2L 12515147 intron bun - chr2L_7_12515001 chr2L_12515001 RAL-818 195 chr2L 12529239 12529261 chr2L 12529391 12529413 8 152 2.5 2.0 2.2 2.5 174 chr2L 12529239 intron bun - chr2L 12529326 intron bun - chr2L 12529413 intron bun - chr2L_8_12525001 chr2L_12525001 RAL-818 196 chr2L 12658439 12658466 chr2L 12658672 12658699 5 233 0.5 3.5 2.0 1.7 260 chr2L 12658439 intron pdm2 + chr2L 12658569 intron pdm2 + chr2L 12658699 intron pdm2 + chr2L_5_12655001 chr2L_12655001 RAL-818 197 chr2L 12728935 12728945 chr2L 12729175 12729185 pogo 4 240 2.5 3.5 3.0 1.0 250 chr2L 12728935 intron MRP + chr2L 12729060 intron MRP + chr2L 12729185 exon MRP + chr2L_4_12725001 chr2L_12725001 RAL-818 198 chr2L 12731056 12731089 chr2L 12735823 12735856 F-element 9 4767 2.0 2.5 2.2 2.8 4800 chr2L 12731056 intron MRP + chr2L 12733456 intron MRP + chr2L 12735856 intron MRP + chr2L_9_12730001 chr2L_12730001 RAL-818 199 chr2L 12739174 12739205 chr2L 12743955 12743986 Doc 11 4781 0.0 4.0 2.0 3.7 4812 chr2L 12739174 exon MRP + chr2L 12741580 intron MRP + chr2L 12743986 exon MRP + chr2L_11_12740001 chr2L_12740001 RAL-818 200 chr2L 12751308 12751341 chr2L 12751391 12751422 12 83 2.0 4.5 3.2 2.9 114 chr2L 12751308 intergenic not near genes chr2L 12751365 intergenic not near genes chr2L 12751422 intergenic not near genes chr2L_12_12750001 chr2L_12750001 RAL-818 201 chr2L 12763168 12763190 chr2L 12763259 12763281 7 91 4.5 2.5 3.5 1.6 113 chr2L 12763168 intergenic not near genes chr2L 12763224 intergenic not near genes chr2L 12763281 intergenic not near genes chr2L_7_12760001 chr2L_12760001 RAL-818 202 chr2L 12781797 12781815 chr2L 12789247 12789265 Quasimodo 7 7449 5.5 2.5 4.0 1.4 7468 chr2L 12781797 intergenic not near genes chr2L 12785531 intergenic not near genes chr2L 12789265 intergenic not near genes chr2L_7_12785001 chr2L_12785001 RAL-818 203 chr2L 12791606 12791631 chr2L 12795281 12795306 F-element 6 3675 1.5 0.5 1.0 3.0 3700 chr2L 12791606 intergenic not near genes chr2L 12793456 intergenic not near genes chr2L 12795306 intergenic not near genes chr2L_6_12790001 chr2L_12790001 RAL-818 204 chr2L 12861696 12861730 chr2L 12863161 12863190 hobo 7 1465 1.0 1.5 1.2 3.2 1494 chr2L 12861696 intergenic not near genes chr2L 12862443 intergenic not near genes chr2L 12863190 intergenic not near genes chr2L_7_12860001 chr2L_12860001 RAL-818 205 chr2L 12892647 12892671 chr2L 12892746 12892769 6 99 1.5 1.5 1.5 2.4 122 chr2L 12892647 intergenic not near genes chr2L 12892708 intergenic not near genes chr2L 12892769 intergenic not near genes chr2L_6_12890001 chr2L_12890001 RAL-818 206 chr2L 12894032 12894041 chr2L 12895484 12895486 hobo 4 1457 3.0 5.5 4.2 0.8 1454 chr2L 12894032 intergenic not near genes chr2L 12894759 intergenic not near genes chr2L 12895486 intergenic not near genes chr2L_4_12890001 chr2L_12890001 RAL-818 207 chr2L 12933850 12933882 chr2L 12941317 12941348 blood 8 7467 2.0 4.5 3.2 1.9 7498 chr2L 12933850 intergenic not near genes chr2L 12937599 intergenic not near genes chr2L 12941348 intergenic not near genes chr2L_8_12935001 chr2L_12935001 RAL-818 208 chr2L 13255285 13255297 chr2L 13255428 13255440 4 143 0.0 3.0 1.5 1.6 155 chr2L 13255285 intron CG31728 + chr2L 13255362 intron CG31728 + chr2L 13255440 exon CG31728 + chr2L_4_13255001 chr2L_13255001 RAL-818 209 chr2L 13366889 13366900 chr2L 13370050 13370073 6 3163 22.5 10.5 16.5 0.3 3184 chr2L 13366889 exon CG6523 + chr2L 13368481 exon Tap42 + chr2L 13370073 3` UTR CG31855 + chr2L_6_13365001 chr2L_13365001 RAL-818 210 chr2L 13398742 13398750 chr2L 13398822 13398830 4 80 1.5 2.5 2.0 1.3 88 chr2L 13398742 intergenic CG10859 -,CR44600 -,CG7110 + chr2L 13398786 intergenic CR44600 -,CG10859 -,CG7110 + chr2L 13398830 intergenic CR44600 -,CG7110 +,CG10859 - chr2L_4_13395001 chr2L_13395001 RAL-818 211 chr2L 13405648 13405673 chr2L 13410445 13410470 Doc 11 4796 3.0 2.0 2.5 3.1 4822 chr2L 13405648 exon CG7110 + chr2L 13408059 intron CG7110 + chr2L 13410470 intron CG7110 + chr2L_11_13405001 chr2L_13405001 RAL-818 212 chr2L 13481451 13481470 chr2L 13482058 13482077 jockey 6 607 2.5 4.5 3.5 1.3 626 chr2L 13481451 intron CG42784 + chr2L 13481764 intron CG42784 + chr2L 13482077 intron CG42784 + chr2L_6_13480001 chr2L_13480001 RAL-818 213 chr2L 13622138 13622164 chr2L 13622237 13622263 11 96 3.0 1.0 2.0 3.7 125 chr2L 13622138 intron kuz + chr2L 13622200 intron kuz + chr2L 13622263 intron kuz + chr2L_11_13620001 chr2L_13620001 RAL-818 214 chr2L 13699558 13699581 chr2L 13699635 13699657 11 75 4.5 5.5 5.0 1.8 99 chr2L 13699558 intron CG31814 - chr2L 13699608 intron CG31814 - chr2L 13699657 intron CG31814 - chr2L_11_13695001 chr2L_13695001 RAL-818 215 chr2L 13720064 13720084 chr2L 13720140 13720160 7 75 2.0 0.5 1.2 3.2 96 chr2L 13720064 intergenic not near genes chr2L 13720112 intergenic not near genes chr2L 13720160 intergenic not near genes chr2L_7_13720001 chr2L_13720001 RAL-818 216 chr2L 13761798 13761830 chr2L 13762909 13762941 Doc 10 1110 3.0 1.5 2.2 3.1 1143 chr2L 13761798 intron TM9SF4 + chr2L 13762370 intron TM9SF4 + chr2L 13762941 intron TM9SF4 + chr2L_10_13760001 chr2L_13760001 RAL-818 217 chr2L 13800172 13800192 chr2L 13800276 13800296 4 104 5.0 1.5 3.2 1.0 124 chr2L 13800172 intergenic Sec71 + chr2L 13800234 intergenic not near genes chr2L 13800296 intergenic not near genes chr2L_4_13800001 chr2L_13800001 RAL-818 218 chr2L 13853098 13853118 chr2L 13862248 13862268 roo 6 9150 4.0 1.5 2.8 1.6 9170 chr2L 13853098 intron CenG1A + chr2L 13857683 intron CenG1A + chr2L 13862268 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-818 219 chr2L 13896595 13896609 chr2L 13898231 13898260 6 1649 15.0 4.5 9.8 0.6 1665 chr2L 13896595 exon CenG1A + chr2L 13897428 exon CenG1A + chr2L 13898260 3` UTR CenG1A + chr2L_6_13895001 chr2L_13895001 RAL-818 220 chr2L 13896316 13896336 chr2L 13898472 13898491 6 2156 17.5 4.5 11.0 0.5 2175 chr2L 13896316 exon CenG1A + chr2L 13897404 intron CenG1A + chr2L 13898491 3` UTR CenG1A + chr2L_6_13895001 chr2L_13895001 RAL-818 221 chr2L 13981522 13981551 chr2L 13981613 13981642 11 91 6.0 4.0 5.0 1.8 120 chr2L 13981522 exon NimC2 + chr2L 13981582 intron NimC2 + chr2L 13981642 intron NimC2 + chr2L_11_13980001 chr2L_13980001 RAL-818 222 chr2L 14208938 14208968 chr2L 14209064 14209094 4 126 2.0 1.0 1.5 1.6 156 chr2L 14208938 intron Dyrk2 - chr2L 14209016 intron Dyrk2 - chr2L 14209094 intron Dyrk2 - chr2L_4_14205001 chr2L_14205001 RAL-818 223 chr2L 14335639 14335671 chr2L 14337033 14337067 11 1389 3.0 4.0 3.5 2.4 1428 chr2L 14335639 intron CG33090 + chr2L 14336353 intron CG33090 + chr2L 14337067 intron CG33090 + chr2L_11_14335001 chr2L_14335001 RAL-818 224 chr2L 14442376 14442391 chr2L 14442460 14442475 9 84 2.5 1.5 2.0 3.0 99 chr2L 14442376 intergenic not near genes chr2L 14442426 intergenic not near genes chr2L 14442475 intergenic not near genes chr2L_9_14440001 chr2L_14440001 RAL-818 225 chr2L 14564193 14564230 chr2L 14564269 14564278 15 62 0.5 1.5 1.0 7.5 85 chr2L 14564193 intergenic CG3473 - chr2L 14564236 intergenic not near genes chr2L 14564278 intergenic not near genes chr2L_15_14560001 chr2L_14560001 RAL-818 226 chr2L 14565885 14565900 chr2L 14565967 14565983 4 82 0.5 3.0 1.8 1.4 98 chr2L 14565885 intergenic not near genes chr2L 14565934 intergenic not near genes chr2L 14565983 intergenic not near genes chr2L_4_14565001 chr2L_14565001 RAL-818 227 chr2L 14595925 14595956 chr2L 14596003 14596034 7 78 1.0 1.0 1.0 3.5 109 chr2L 14595925 intergenic not near genes chr2L 14595980 intergenic not near genes chr2L 14596034 intergenic not near genes chr2L_7_14595001 chr2L_14595001 RAL-818 228 chr2L 14694265 14694286 chr2L 14694389 14694409 4 124 1.0 2.5 1.8 1.4 144 chr2L 14694265 intergenic not near genes chr2L 14694337 intergenic not near genes chr2L 14694409 intergenic not near genes chr2L_4_14690001 chr2L_14690001 RAL-818 229 chr2L 14803879 14803912 chr2L 14809082 14809115 copia 11 5202 3.0 2.5 2.8 2.9 5236 chr2L 14803879 intergenic not near genes chr2L 14806497 intergenic not near genes chr2L 14809115 intergenic not near genes chr2L_11_14805001 chr2L_14805001 RAL-818 230 chr2L 14833793 14833820 chr2L 14833897 14833923 4 104 0.5 1.5 1.0 2.0 130 chr2L 14833793 intergenic not near genes chr2L 14833858 intergenic not near genes chr2L 14833923 intergenic not near genes chr2L_4_14830001 chr2L_14830001 RAL-818 231 chr2L 14840979 14840992 chr2L 14841066 14841075 5 86 2.0 2.0 2.0 1.7 96 chr2L 14840979 3` UTR CR43805 - chr2L 14841027 3` UTR CR43805 - chr2L 14841075 3` UTR CR43805 - chr2L_5_14840001 chr2L_14840001 RAL-818 232 chr2L 14889959 14889988 chr2L 14890383 14890413 jockey 8 424 4.5 5.0 4.8 1.4 454 chr2L 14889959 intergenic not near genes chr2L 14890186 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_8_14890001 chr2L_14890001 RAL-818 233 chr2L 14957799 14957827 chr2L 14957880 14957905 8 78 1.5 6.5 4.0 1.6 106 chr2L 14957799 intron CG42313 - chr2L 14957852 intron CG42313 - chr2L 14957905 intron CG42313 - chr2L_8_14955001 chr2L_14955001 RAL-818 234 chr2L 15003544 15003571 chr2L 15003628 15003655 5 84 1.0 2.0 1.5 2.0 111 chr2L 15003544 intergenic not near genes chr2L 15003600 intergenic not near genes chr2L 15003655 intergenic not near genes chr2L_5_15000001 chr2L_15000001 RAL-818 235 chr2L 15021446 15021469 chr2L 15021521 15021545 8 74 1.0 0.0 0.5 5.3 99 chr2L 15021446 intron GABA-B-R1 + chr2L 15021496 intron GABA-B-R1 + chr2L 15021545 intron GABA-B-R1 + chr2L_8_15020001 chr2L_15020001 RAL-818 236 chr2L 15026022 15026048 chr2L 15026103 15026129 12 81 4.0 4.5 4.2 2.3 107 chr2L 15026022 exon GABA-B-R1 + chr2L 15026076 intron GABA-B-R1 + chr2L 15026129 intron GABA-B-R1 + chr2L_12_15025001 chr2L_15025001 RAL-818 237 chr2L 15044726 15044738 chr2L 15044802 15044814 6 76 0.0 0.0 0.0 6.0 88 chr2L 15044726 intergenic ck - chr2L 15044770 intergenic ck - chr2L 15044814 intergenic ck - chr2L_6_15040001 chr2L_15040001 RAL-818 238 chr2L 15077902 15078100 chr2L 15077990 15078186 7 88 0.5 1.5 1.0 3.5 284 chr2L 15077902 intron CG15270 + chr2L 15078044 intron CG15270 + chr2L 15078186 intron CG15270 + chr2L_7_15075001 chr2L_15075001 RAL-818 239 chr2L 15171084 15171112 chr2L 15171242 15171268 10 148 2.0 2.0 2.0 3.3 184 chr2L 15171084 intron CG4168 - chr2L 15171176 intron CG4168 - chr2L 15171268 intron CG4168 - chr2L_10_15170001 chr2L_15170001 RAL-818 240 chr2L 15252888 15252908 chr2L 15252971 15252991 6 82 2.5 2.5 2.5 1.7 103 chr2L 15252888 intron dao + chr2L 15252940 intron dao + chr2L 15252991 intron dao + chr2L_6_15250001 chr2L_15250001 RAL-818 241 chr2L 15309351 15309383 chr2L 15309454 15309486 6 103 0.0 2.5 1.2 2.7 135 chr2L 15309351 intergenic not near genes chr2L 15309418 intergenic not near genes chr2L 15309486 intergenic not near genes chr2L_6_15305001 chr2L_15305001 RAL-818 242 chr2L 15446051 15446074 chr2L 15453520 15453543 blood 4 7469 3.0 0.0 1.5 1.6 7492 chr2L 15446051 intergenic not near genes chr2L 15449797 intergenic not near genes chr2L 15453543 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-818 243 chr2L 15586408 15586442 chr2L 15593460 15593494 297 10 7052 3.0 1.5 2.2 3.1 7086 chr2L 15586408 intergenic not near genes chr2L 15589951 intergenic not near genes chr2L 15593494 intergenic not near genes chr2L_10_15585001 chr2L_15585001 RAL-818 244 chr2L 15823353 15823372 chr2L 15823429 15823448 4 76 1.0 2.0 1.5 1.6 95 chr2L 15823353 intergenic CR44601 - chr2L 15823400 intergenic CR44601 - chr2L 15823448 intergenic not near genes chr2L_4_15820001 chr2L_15820001 RAL-818 245 chr2L 15887716 15887745 chr2L 15887849 15887878 11 133 3.0 2.5 2.8 2.9 162 chr2L 15887716 intergenic not near genes chr2L 15887797 intergenic not near genes chr2L 15887878 intergenic not near genes chr2L_11_15885001 chr2L_15885001 RAL-818 246 chr2L 15906192 15906207 chr2L 15906281 15906290 5 87 2.0 4.0 3.0 1.2 98 chr2L 15906192 intron beat-Ib - chr2L 15906241 intron beat-Ib - chr2L 15906290 intron beat-Ib - chr2L_5_15905001 chr2L_15905001 RAL-818 247 chr2L 15947160 15947166 chr2L 15947237 15947248 5 79 6.0 4.5 5.2 0.8 88 chr2L 15947160 intron beat-Ib - chr2L 15947204 intron beat-Ib - chr2L 15947248 intron beat-Ib - chr2L_5_15945001 chr2L_15945001 RAL-818 248 chr2L 15956022 15956050 chr2L 15957489 15957517 hobo 13 1466 3.0 1.5 2.2 4.1 1495 chr2L 15956022 intron beat-Ib - chr2L 15956770 intron beat-Ib - chr2L 15957517 intron beat-Ib - chr2L_13_15955001 chr2L_15955001 RAL-818 249 chr2L 16058125 16058136 chr2L 16058266 16058277 6 141 2.5 0.5 1.5 2.4 152 chr2L 16058125 intron beat-Ia + chr2L 16058201 intron beat-Ia + chr2L 16058277 intron beat-Ia + chr2L_6_16055001 chr2L_16055001 RAL-818 250 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 15 145889 15.0 16.0 15.5 0.9 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_16140001 chr2L_16140001 RAL-818 251 chr2L 16141169 16141194 chr2L 16146376 16146400 copia 7 5207 0.0 2.5 1.2 3.2 5231 chr2L 16141169 intergenic not near genes chr2L 16143784 intergenic not near genes chr2L 16146400 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-818 252 chr2L 16197136 16197149 chr2L 16197804 16197825 4 672 1.0 2.5 1.8 1.4 689 chr2L 16197136 intergenic not near genes chr2L 16197480 intergenic not near genes chr2L 16197825 intergenic not near genes chr2L_4_16195001 chr2L_16195001 RAL-818 253 chr2L 9084339 9084340 chr2L 16217660 16217660 4 7133320 11.0 16.0 13.5 0.3 7133321 chr2L 9084339 intron Toll-4 + chr2L 12651000 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_4_12650001 chr2L_12650001 RAL-818 254 chr2L 16243694 16243839 chr2L 16243777 16243933 6 88 5.0 3.5 4.2 1.2 239 chr2L 16243694 exon CG42818 + chr2L 16243814 exon CG42818 + chr2L 16243933 exon CG42818 + chr2L_6_16240001 chr2L_16240001 RAL-818 255 chr2L 16263988 16264023 chr2L 16264078 16264114 14 90 1.5 3.0 2.2 4.4 126 chr2L 16263988 3` UTR crp - chr2L 16264051 3` UTR crp - chr2L 16264114 3` UTR crp - chr2L_14_16260001 chr2L_16260001 RAL-818 256 chr2L 16280254 16280282 chr2L 16281424 16281434 1360 11 1167 5.0 7.0 6.0 1.6 1180 chr2L 16280254 intron crp - chr2L 16280844 intron crp - chr2L 16281434 intron crp - chr2L_11_16280001 chr2L_16280001 RAL-818 257 chr2L 16434106 16434131 chr2L 16434188 16434213 4 82 2.0 1.5 1.8 1.4 107 chr2L 16434106 intron CG5888 - chr2L 16434160 intron CG5888 - chr2L 16434213 intron CG5888 - chr2L_4_16430001 chr2L_16430001 RAL-818 258 chr2L 16550652 16550684 chr2L 16550728 16550760 9 76 1.5 1.5 1.5 3.6 108 chr2L 16550652 intron CG42389 + chr2L 16550706 intron CG42389 + chr2L 16550760 intron CG42389 + chr2L_9_16550001 chr2L_16550001 RAL-818 259 chr2L 16612820 16612846 chr2L 16612896 16612898 5 67 3.0 1.0 2.0 1.7 78 chr2L 16612820 intron CG42389 + chr2L 16612859 intron CG42389 + chr2L 16612898 intron CG42389 + chr2L_5_16610001 chr2L_16610001 RAL-818 260 chr2L 16654706 16654732 chr2L 16654799 16654821 6 92 1.0 4.5 2.8 1.6 115 chr2L 16654706 intron CG42389 + chr2L 16654764 intron CG42389 + chr2L 16654821 intron CG42389 + chr2L_6_16650001 chr2L_16650001 RAL-818 261 chr2L 16688386 16688413 chr2L 16688467 16688494 8 81 1.5 1.5 1.5 3.2 108 chr2L 16688386 intron grp + chr2L 16688440 intron grp + chr2L 16688494 intron grp + chr2L_8_16685001 chr2L_16685001 RAL-818 262 chr2L 16700901 16700924 chr2L 16701042 16701054 5 138 0.5 2.0 1.2 2.3 153 chr2L 16700901 intergenic not near genes chr2L 16700978 intergenic not near genes chr2L 16701054 intergenic not near genes chr2L_5_16700001 chr2L_16700001 RAL-818 263 chr2L 17000120 17000138 chr2L 17000242 17000259 5 122 2.0 2.0 2.0 1.7 139 chr2L 17000120 intergenic not near genes chr2L 17000190 intergenic not near genes chr2L 17000259 intergenic not near genes chr2L_5_17000001 chr2L_17000001 RAL-818 264 chr2L 17025057 17025088 chr2L 17025142 17025172 6 85 5.5 4.5 5.0 1.0 115 chr2L 17025057 intergenic not near genes chr2L 17025114 intergenic not near genes chr2L 17025172 intergenic not near genes chr2L_6_17025001 chr2L_17025001 RAL-818 265 chr2L 17111842 17111865 chr2L 17111940 17111963 5 98 2.5 1.5 2.0 1.7 121 chr2L 17111842 intergenic not near genes chr2L 17111902 intergenic not near genes chr2L 17111963 intergenic not near genes chr2L_5_17110001 chr2L_17110001 RAL-818 266 chr2L 17120852 17120874 chr2L 17120931 17120952 4 79 0.5 3.5 2.0 1.3 100 chr2L 17120852 intergenic not near genes chr2L 17120902 intergenic not near genes chr2L 17120952 intergenic not near genes chr2L_4_17120001 chr2L_17120001 RAL-818 267 chr2L 17158728 17158750 chr2L 17158831 17158853 5 103 1.0 1.5 1.2 2.3 125 chr2L 17158728 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158790 intron,intron CG34106 +,beat-IIIa + chr2L 17158853 intron,intron CG34106 +,beat-IIIa + chr2L_5_17155001 chr2L_17155001 RAL-818 268 chr2L 17167578 17167594 chr2L 17167819 17167833 pogo 7 241 2.0 3.5 2.8 1.8 255 chr2L 17167578 intron,intron CG34106 +,beat-IIIa + chr2L 17167706 intron,intron CG34106 +,beat-IIIa + chr2L 17167833 intron,intron CG34106 +,beat-IIIa + chr2L_7_17165001 chr2L_17165001 RAL-818 269 chr2L 17204047 17204074 chr2L 17204121 17204151 5 76 0.5 2.0 1.2 2.3 104 chr2L 17204047 intron beat-IIIc - chr2L 17204099 intron beat-IIIc - chr2L 17204151 intron beat-IIIc - chr2L_5_17200001 chr2L_17200001 RAL-818 270 chr2L 17273195 17273231 chr2L 17277977 17278005 F-element 10 4779 1.5 5.0 3.2 2.4 4810 chr2L 17273195 intergenic not near genes chr2L 17275600 intergenic not near genes chr2L 17278005 intergenic not near genes chr2L_10_17275001 chr2L_17275001 RAL-818 271 chr2L 17303440 17303465 chr2L 17303618 17303622 7 174 1.5 4.0 2.8 1.8 182 chr2L 17303440 intergenic not near genes chr2L 17303531 intergenic not near genes chr2L 17303622 intergenic not near genes chr2L_7_17300001 chr2L_17300001 RAL-818 272 chr2L 17333603 17333617 chr2L 17333687 17333702 4 84 0.5 0.0 0.2 3.3 99 chr2L 17333603 intergenic not near genes chr2L 17333652 intergenic not near genes chr2L 17333702 intergenic not near genes chr2L_4_17330001 chr2L_17330001 RAL-818 273 chr2L 17339140 17339153 chr2L 17339217 17339230 6 77 1.0 2.5 1.8 2.1 90 chr2L 17339140 intergenic not near genes chr2L 17339185 intergenic not near genes chr2L 17339230 intergenic not near genes chr2L_6_17335001 chr2L_17335001 RAL-818 274 chr2L 17692948 17692974 chr2L 17693060 17693088 6 114 1.5 1.0 1.2 2.7 140 chr2L 17692948 intron CadN - chr2L 17693018 intron CadN - chr2L 17693088 intron CadN - chr2L_6_17690001 chr2L_17690001 RAL-818 275 chr2L 17703657 17703679 chr2L 17703738 17703770 5 87 3.0 0.5 1.8 1.8 113 chr2L 17703657 intron CadN - chr2L 17703714 intron CadN - chr2L 17703770 intron CadN - chr2L_5_17700001 chr2L_17700001 RAL-818 276 chr2L 17709125 17709151 chr2L 17709209 17709235 5 84 1.5 1.0 1.2 2.3 110 chr2L 17709125 intron CadN - chr2L 17709180 intron CadN - chr2L 17709235 intron CadN - chr2L_5_17705001 chr2L_17705001 RAL-818 277 chr2L 17879998 17880022 chr2L 17880085 17880109 6 87 3.5 0.5 2.0 2.0 111 chr2L 17879998 intergenic not near genes chr2L 17880054 intergenic not near genes chr2L 17880109 intergenic not near genes chr2L_6_17880001 chr2L_17880001 RAL-818 278 chr2L 17911962 17911987 chr2L 17914139 17914165 pogo 5 2178 3.0 3.0 3.0 1.2 2203 chr2L 17911962 intergenic not near genes chr2L 17913064 intergenic not near genes chr2L 17914165 intergenic CG43271 - chr2L_5_17910001 chr2L_17910001 RAL-818 279 chr2L 17938692 17938719 chr2L 17938777 17938805 6 85 0.5 0.0 0.2 5.0 113 chr2L 17938692 intergenic CR44399 - chr2L 17938748 intergenic CR44399 - chr2L 17938805 intergenic CR44399 - chr2L_6_17935001 chr2L_17935001 RAL-818 280 chr2L 17951950 17951978 chr2L 17953417 17953445 hobo 7 1467 1.0 2.0 1.5 2.8 1495 chr2L 17951950 intergenic CR44398 -,CR44397 - chr2L 17952698 intergenic not near genes chr2L 17953445 intergenic not near genes chr2L_7_17950001 chr2L_17950001 RAL-818 281 chr2L 18051875 18051906 chr2L 18061022 18061052 roo 9 9145 2.0 4.0 3.0 2.2 9177 chr2L 18051875 intron rdo + chr2L 18056464 intron rdo + chr2L 18061052 intron rdo + chr2L_9_18055001 chr2L_18055001 RAL-818 282 chr2L 18111243 18111267 chr2L 18111334 18111354 9 90 4.0 2.5 3.2 2.1 111 chr2L 18111243 intergenic not near genes chr2L 18111298 intergenic not near genes chr2L 18111354 intergenic not near genes chr2L_9_18110001 chr2L_18110001 RAL-818 283 chr2L 18393982 18394012 chr2L 18394061 18394092 6 80 2.5 2.0 2.2 1.9 110 chr2L 18393982 intergenic not near genes chr2L 18394037 intergenic not near genes chr2L 18394092 intergenic not near genes chr2L_6_18390001 chr2L_18390001 RAL-818 284 chr2L 18408028 18408054 chr2L 18412812 18412838 Doc 6 4784 4.0 0.0 2.0 2.0 4810 chr2L 18408028 intergenic not near genes chr2L 18410433 intergenic not near genes chr2L 18412838 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-818 285 chr2L 18455309 18455325 chr2L 18455536 18455552 4 227 3.5 4.5 4.0 0.8 243 chr2L 18455309 3` UTR Ntf-2r + chr2L 18455430 intergenic Ntf-2r +,let-7-C + chr2L 18455552 intergenic Ntf-2r +,let-7-C + chr2L_4_18455001 chr2L_18455001 RAL-818 286 chr2L 18561553 18561579 chr2L 18561654 18561680 4 101 3.0 2.5 2.8 1.1 127 chr2L 18561553 intron Pde11 - chr2L 18561616 intron Pde11 - chr2L 18561680 intron Pde11 - chr2L_4_18560001 chr2L_18560001 RAL-818 287 chr2L 18812556 18812583 chr2L 18812819 18812845 7 263 2.0 3.5 2.8 1.8 289 chr2L 18812556 intergenic CG17325 +,CG42305 + chr2L 18812700 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812845 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_7_18810001 chr2L_18810001 RAL-818 288 chr2L 18883851 18883887 chr2L 18883933 18883969 12 79 1.5 2.0 1.8 4.3 118 chr2L 18883851 intergenic not near genes chr2L 18883910 intergenic not near genes chr2L 18883969 intergenic not near genes chr2L_12_18880001 chr2L_18880001 RAL-818 289 chr2L 18902643 18902657 chr2L 18902924 18902938 4 280 0.5 1.0 0.8 2.2 295 chr2L 18902643 intergenic not near genes chr2L 18902790 intergenic not near genes chr2L 18902938 intergenic not near genes chr2L_4_18900001 chr2L_18900001 RAL-818 290 chr2L 18981751 18981773 chr2L 18981828 18981850 10 75 5.0 3.0 4.0 2.0 99 chr2L 18981751 intron Swip-1 - chr2L 18981800 intron Swip-1 - chr2L 18981850 intron Swip-1 - chr2L_10_18980001 chr2L_18980001 RAL-818 291 chr2L 19121048 19121060 chr2L 19121126 19121138 6 78 5.5 1.0 3.2 1.4 90 chr2L 19121048 intergenic l(2)37Cc - chr2L 19121093 intergenic l(2)37Cc - chr2L 19121138 intergenic l(2)37Cc - chr2L_6_19120001 chr2L_19120001 RAL-818 292 chr2L 19147269 19147293 chr2L 19147383 19147398 4 108 5.0 0.0 2.5 1.1 129 chr2L 19147269 intron brat + chr2L 19147334 intron brat + chr2L 19147398 intron brat + chr2L_4_19145001 chr2L_19145001 RAL-818 293 chr2L 19211959 19211965 chr2L 19212036 19212042 4 77 3.5 1.5 2.5 1.1 83 chr2L 19211959 intergenic not near genes chr2L 19212000 intergenic not near genes chr2L 19212042 intergenic not near genes chr2L_4_19210001 chr2L_19210001 RAL-818 294 chr2L 19345014 19345044 chr2L 19357222 19357253 blood 10 12207 0.5 5.0 2.8 2.6 12239 chr2L 19345014 intron dnt - chr2L 19351134 intron dnt - chr2L 19357253 intron dnt - chr2L_10_19350001 chr2L_19350001 RAL-818 295 chr2L 19357551 19357567 chr2L 19357641 19357657 5 89 2.5 6.5 4.5 0.9 106 chr2L 19357551 intron dnt - chr2L 19357604 intron dnt - chr2L 19357657 intron dnt - chr2L_5_19355001 chr2L_19355001 RAL-818 296 chr2L 19374496 19374508 chr2L 19374605 19374617 4 109 2.5 1.5 2.0 1.3 121 chr2L 19374496 intergenic not near genes chr2L 19374556 intergenic not near genes chr2L 19374617 intergenic not near genes chr2L_4_19370001 chr2L_19370001 RAL-818 297 chr2L 19407716 19407739 chr2L 19407913 19407936 10 196 4.5 4.5 4.5 1.8 220 chr2L 19407716 intron Pax - chr2L 19407826 intron Pax - chr2L 19407936 intron Pax - chr2L_10_19405001 chr2L_19405001 RAL-818 298 chr2L 19437523 19437532 chr2L 19437615 19437624 4 92 2.0 3.5 2.8 1.1 101 chr2L 19437523 intron CG10237 - chr2L 19437574 intron CG10237 - chr2L 19437624 intron CG10237 - chr2L_4_19435001 chr2L_19435001 RAL-818 299 chr2L 19544611 19544624 chr2L 19544661 19544670 4 62 2.5 5.0 3.8 0.8 59 chr2L 19544611 exon ref(2)P + chr2L 19544640 exon ref(2)P + chr2L 19544670 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-818 300 chr2L 19558532 19558541 chr2L 19558634 19558645 4 103 0.5 1.0 0.8 2.2 113 chr2L 19558532 intron Tep5 + chr2L 19558588 intron Tep5 + chr2L 19558645 intron Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-818 301 chr2L 19559407 19559413 chr2L 19559477 19559489 7 75 0.0 0.0 0.0 7.0 82 chr2L 19559407 exon Tep5 + chr2L 19559448 exon Tep5 + chr2L 19559489 exon Tep5 + chr2L_7_19555001 chr2L_19555001 RAL-818 302 chr2L 19560028 19560038 chr2L 19560269 19560290 4 249 4.0 3.5 3.8 0.8 262 chr2L 19560028 exon Tep5 + chr2L 19560159 exon Tep5 + chr2L 19560290 intron Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-818 303 chr2L 19560835 19560865 chr2L 19560915 19560945 8 80 3.5 0.0 1.8 2.9 110 chr2L 19560835 intron Tep5 + chr2L 19560890 exon Tep5 + chr2L 19560945 exon Tep5 + chr2L_8_19560001 chr2L_19560001 RAL-818 304 chr2L 19561343 19561349 chr2L 19561484 19561490 4 141 3.0 3.0 3.0 1.0 147 chr2L 19561343 exon Tep5 + chr2L 19561416 exon Tep5 + chr2L 19561490 exon Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-818 305 chr2L 19620092 19620130 chr2L 19621081 19621081 jockey 11 979 4.5 3.0 3.8 2.3 989 chr2L 19620092 intron Lar + chr2L 19620586 intron Lar + chr2L 19621081 intron Lar + chr2L_11_19620001 chr2L_19620001 RAL-818 306 chr2L 19652579 19652602 chr2L 19674012 19674036 opus 6 21434 3.0 4.5 3.8 1.2 21457 chr2L 19652579 intron Lar + chr2L 19663308 intron Lar + chr2L 19674036 intron Lar + chr2L_6_19660001 chr2L_19660001 RAL-818 307 chr2L 19689057 19689080 chr2L 19689160 19689183 7 104 4.0 2.0 3.0 1.8 126 chr2L 19689057 intron Lar + chr2L 19689120 intron Lar + chr2L 19689183 intron Lar + chr2L_7_19685001 chr2L_19685001 RAL-818 308 chr2L 19697135 19697170 chr2L 19697228 19697263 16 91 4.0 2.5 3.2 3.8 128 chr2L 19697135 intron Lar + chr2L 19697199 intron Lar + chr2L 19697263 intron Lar + chr2L_16_19695001 chr2L_19695001 RAL-818 309 chr2L 19703538 19703570 chr2L 19712674 19712705 roo 15 9136 3.0 3.0 3.0 3.8 9167 chr2L 19703538 intron Lar + chr2L 19708122 intron Lar + chr2L 19712705 intron Lar + chr2L_15_19705001 chr2L_19705001 RAL-818 310 chr2L 19712687 19712721 chr2L 19712771 19712795 13 73 3.0 2.5 2.8 3.4 108 chr2L 19712687 intron Lar + chr2L 19712741 intron Lar + chr2L 19712795 intron Lar + chr2L_13_19710001 chr2L_19710001 RAL-818 311 chr2L 19737363 19737388 chr2L 19740832 19740840 1360 10 3463 0.0 9.5 4.8 1.7 3477 chr2L 19737363 intergenic Nf-YB + chr2L 19739102 intergenic not near genes chr2L 19740840 intergenic not near genes chr2L_10_19735001 chr2L_19735001 RAL-818 312 chr2L 19762813 19762838 chr2L 19763055 19763080 pogo 7 241 1.5 3.0 2.2 2.2 267 chr2L 19762813 5` UTR fbp - chr2L 19762946 intron fbp - chr2L 19763080 intron fbp - chr2L_7_19760001 chr2L_19760001 RAL-818 313 chr2L 19994663 19994687 chr2L 19994740 19994758 4 77 1.5 2.0 1.8 1.4 95 chr2L 19994663 intron CG43861 - chr2L 19994710 intron CG43861 - chr2L 19994758 intron CG43861 - chr2L_4_19990001 chr2L_19990001 RAL-818 314 chr2L 20000049 20000077 chr2L 20000138 20000161 10 85 2.5 0.5 1.5 4.0 112 chr2L 20000049 intron CG43861 - chr2L 20000105 intron CG43861 - chr2L 20000161 intron,3` UTR CG43861 -,CR44908 - chr2L_10_20000001 chr2L_20000001 RAL-818 315 chr2L 20005880 20005890 chr2L 20010956 20010966 flea 4 5076 2.0 1.0 1.5 1.6 5086 chr2L 20005880 intron CG43861 - chr2L 20008423 intron CG43861 - chr2L 20010966 intron CG43861 - chr2L_4_20005001 chr2L_20005001 RAL-818 316 chr2L 20022089 20022122 chr2L 20022202 20022233 5 113 1.0 1.5 1.2 2.3 144 chr2L 20022089 intergenic not near genes chr2L 20022161 intergenic not near genes chr2L 20022233 intergenic not near genes chr2L_5_20020001 chr2L_20020001 RAL-818 317 chr2L 20065701 20065721 chr2L 20065788 20065808 5 87 2.0 2.0 2.0 1.7 107 chr2L 20065701 intergenic vls - chr2L 20065754 intergenic vls - chr2L 20065808 intergenic vls - chr2L_5_20065001 chr2L_20065001 RAL-818 318 chr2L 20269608 20269627 chr2L 20269832 20269841 8 220 5.5 1.5 3.5 1.8 233 chr2L 20269608 intergenic not near genes chr2L 20269724 intergenic not near genes chr2L 20269841 intergenic not near genes chr2L_8_20265001 chr2L_20265001 RAL-818 319 chr2L 20271263 20271271 chr2L 20271346 20271354 4 82 8.0 6.0 7.0 0.5 91 chr2L 20271263 intergenic not near genes chr2L 20271308 intergenic not near genes chr2L 20271354 intergenic not near genes chr2L_4_20270001 chr2L_20270001 RAL-818 320 chr2L 20272112 20272144 chr2L 20282823 20282855 copia 6 10710 3.0 2.0 2.5 1.7 10743 chr2L 20272112 intergenic not near genes chr2L 20277484 intergenic not near genes chr2L 20282855 intergenic not near genes chr2L_6_20275001 chr2L_20275001 RAL-818 321 chr2L 20296507 20296537 chr2L 20296588 20296618 11 80 1.0 2.0 1.5 4.4 111 chr2L 20296507 intergenic CR43414 - chr2L 20296562 intergenic CR43414 - chr2L 20296618 intergenic CR43414 - chr2L_11_20295001 chr2L_20295001 RAL-818 322 chr2L 20298826 20298848 chr2L 20298909 20298931 7 82 1.5 2.5 2.0 2.3 105 chr2L 20298826 intergenic not near genes chr2L 20298878 intergenic not near genes chr2L 20298931 intergenic not near genes chr2L_7_20295001 chr2L_20295001 RAL-818 323 chr2L 20303181 20303192 chr2L 20310649 20310659 blood 5 7468 0.0 5.0 2.5 1.4 7478 chr2L 20303181 intergenic not near genes chr2L 20306920 intergenic not near genes chr2L 20310659 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-818 324 chr2L 20310881 20310920 chr2L 20310961 20310999 6 80 0.5 2.0 1.2 2.7 118 chr2L 20310881 intergenic spir + chr2L 20310940 intergenic spir + chr2L 20310999 intergenic spir + chr2L_6_20310001 chr2L_20310001 RAL-818 325 chr2L 20383441 20383470 chr2L 20383533 20383562 8 91 1.5 1.5 1.5 3.2 121 chr2L 20383441 intergenic not near genes chr2L 20383502 intergenic not near genes chr2L 20383562 intergenic not near genes chr2L_8_20380001 chr2L_20380001 RAL-818 326 chr2L 20498690 20498704 chr2L 20498789 20498803 6 99 0.5 6.5 3.5 1.3 113 chr2L 20498690 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498803 intergenic not near genes chr2L_6_20495001 chr2L_20495001 RAL-818 327 chr2L 20538069 20538099 chr2L 20538145 20538174 7 76 1.0 1.5 1.2 3.2 105 chr2L 20538069 intergenic not near genes chr2L 20538122 intergenic not near genes chr2L 20538174 intergenic not near genes chr2L_7_20535001 chr2L_20535001 RAL-818 328 chr2L 20568669 20568681 chr2L 20569059 20569071 X-element 8 390 2.5 5.0 3.8 1.7 402 chr2L 20568669 intron CR45347 + chr2L 20568870 intron CR45347 + chr2L 20569071 intron CR45347 + chr2L_8_20565001 chr2L_20565001 RAL-818 329 chr2L 20601789 20601812 chr2L 20601867 20601890 4 78 5.0 1.0 3.0 1.0 101 chr2L 20601789 intron CR44909 - chr2L 20601840 intron CR44909 - chr2L 20601890 intron CR44909 - chr2L_4_20600001 chr2L_20600001 RAL-818 330 chr2L 20668697 20668720 chr2L 20668773 20668791 6 75 1.5 5.5 3.5 1.3 94 chr2L 20668697 intron CG31678 - chr2L 20668744 intron CG31678 - chr2L 20668791 intron CG31678 - chr2L_6_20665001 chr2L_20665001 RAL-818 331 chr2L 20818513 20818535 chr2L 20818591 20818610 5 79 5.0 1.5 3.2 1.2 97 chr2L 20818513 exon CheB38a - chr2L 20818562 intergenic CheB38a - chr2L 20818610 intergenic CheB38a - chr2L_5_20815001 chr2L_20815001 RAL-818 332 chr2L 20840234 20840264 chr2L 20840660 20840665 8 423 2.5 2.5 2.5 2.3 431 chr2L 20840234 intergenic not near genes chr2L 20840450 intergenic CG31676 + chr2L 20840665 intergenic CG31676 + chr2L_8_20840001 chr2L_20840001 RAL-818 333 chr2L 20901473 20901489 chr2L 20902635 20902653 1360 6 1163 0.5 1.0 0.8 3.3 1180 chr2L 20901473 intron,intron CG43739 -,sky - chr2L 20902063 intron,intron CG43739 -,sky - chr2L 20902653 intron,intron CG43739 -,sky - chr2L_6_20900001 chr2L_20900001 RAL-818 334 chr2L 20934608 20934620 chr2L 20934803 20934815 4 195 3.0 0.0 1.5 1.6 207 chr2L 20934608 intergenic CG9270 - chr2L 20934712 intergenic not near genes chr2L 20934815 intergenic not near genes chr2L_4_20930001 chr2L_20930001 RAL-818 335 chr2L 20967097 20967102 chr2L 20967182 20967188 4 86 4.0 4.0 4.0 0.8 91 chr2L 20967097 3` UTR CG42238 - chr2L 20967142 3` UTR CG42238 - chr2L 20967188 3` UTR CG42238 - chr2L_4_20965001 chr2L_20965001 RAL-818 336 chr2L 20976641 20976678 chr2L 20981456 20981493 X-element 9 4815 1.5 1.5 1.5 3.6 4852 chr2L 20976641 intron CG42238 - chr2L 20979067 intron CG42238 - chr2L 20981493 intron CG42238 - chr2L_9_20975001 chr2L_20975001 RAL-818 337 chr2L 20982269 20982299 chr2L 20982362 20982392 9 93 4.5 2.0 3.2 2.1 123 chr2L 20982269 intron CG42238 - chr2L 20982330 intron CG42238 - chr2L 20982392 intron CG42238 - chr2L_9_20980001 chr2L_20980001 RAL-818 338 chr2L 21003557 21003587 chr2L 21003642 21003672 11 85 3.5 1.0 2.2 3.4 115 chr2L 21003557 intron CG42238 - chr2L 21003614 intron CG42238 - chr2L 21003672 intron CG42238 - chr2L_11_21000001 chr2L_21000001 RAL-818 339 chr2L 21020271 21020309 chr2L 21023948 21023986 NOF 13 3676 2.5 4.5 3.5 2.9 3715 chr2L 21020271 intron CG42238 - chr2L 21022128 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_13_21020001 chr2L_21020001 RAL-818 340 chr2L 21041146 21041165 chr2L 21049394 21049410 Tirant 6 8255 2.0 3.5 2.8 1.6 8264 chr2L 21041146 intron CG42238 - chr2L 21045278 intron CG42238 - chr2L 21049410 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-818 341 chr2L 21113688 21113709 chr2L 21113781 21113802 5 93 3.0 2.0 2.5 1.4 114 chr2L 21113688 intron Nhe2 + chr2L 21113745 intron Nhe2 + chr2L 21113802 intron Nhe2 + chr2L_5_21110001 chr2L_21110001 RAL-818 342 chr2L 21596299 21596313 chr2L 21596375 21596389 4 76 0.5 0.5 0.5 2.7 90 chr2L 21596299 intergenic not near genes chr2L 21596344 intergenic not near genes chr2L 21596389 intergenic not near genes chr2L_4_21595001 chr2L_21595001 RAL-818 343 chr2L 21597041 21597062 chr2L 21604785 21604806 roo 4 7744 0.5 2.0 1.2 1.8 7765 chr2L 21597041 intergenic not near genes chr2L 21600924 intergenic not near genes chr2L 21604806 intergenic not near genes chr2L_4_21600001 chr2L_21600001 RAL-818 344 chr2L 21653192 21653217 chr2L 21656496 21656521 invader4 4 3304 1.0 1.5 1.2 1.8 3329 chr2L 21653192 intergenic not near genes chr2L 21654856 intergenic not near genes chr2L 21656521 intergenic not near genes chr2L_4_21650001 chr2L_21650001 RAL-818 345 chr2L 21755493 21755521 chr2L 21755617 21755644 6 123 3.5 3.5 3.5 1.3 151 chr2L 21755493 intron step - chr2L 21755568 intron step - chr2L 21755644 intron step - chr2L_6_21755001 chr2L_21755001 RAL-818 346 chr2L 21855487 21855513 chr2L 21855573 21855600 6 87 1.0 2.0 1.5 2.4 113 chr2L 21855487 intron CR44917 + chr2L 21855544 intron CR44917 + chr2L 21855600 intron CR44917 + chr2L_6_21855001 chr2L_21855001 RAL-818 347 chr2L 21859321 21859353 chr2L 21859397 21859433 13 80 0.5 4.5 2.5 3.7 112 chr2L 21859321 intron CR44917 + chr2L 21859377 intron CR44917 + chr2L 21859433 intron CR44917 + chr2L_13_21855001 chr2L_21855001 RAL-818 348 chr2L 21898842 21898880 chr2L 21898970 21899006 7 126 0.0 1.5 0.8 3.9 164 chr2L 21898842 intergenic not near genes chr2L 21898924 intergenic not near genes chr2L 21899006 intergenic not near genes chr2L_7_21895001 chr2L_21895001 RAL-818 349 chr2L 21918924 21918945 chr2L 21919030 21919051 5 106 3.5 0.5 2.0 1.7 127 chr2L 21918924 intron CG11634 + chr2L 21918988 intron CG11634 + chr2L 21919051 intron CG11634 + chr2L_5_21915001 chr2L_21915001 RAL-818 350 chr2L 21981682 21981712 chr2L 21990847 21990873 roo 11 9164 2.0 8.0 5.0 1.8 9191 chr2L 21981682 exon CG2528 - chr2L 21986278 intron CG2528 - chr2L 21990873 exon CG2528 - chr2L_11_21985001 chr2L_21985001 RAL-818 351 chr2L 22179541 22179573 chr2L 22179618 22179650 17 77 3.0 4.5 3.8 3.5 109 chr2L 22179541 intron CG3635 + chr2L 22179596 intron CG3635 + chr2L 22179650 intron CG3635 + chr2L_17_22175001 chr2L_22175001 RAL-818 352 chr2L 22239427 22239461 chr2L 22239508 22239542 7 79 4.0 3.0 3.5 1.6 115 chr2L 22239427 3` UTR CR43765 - chr2L 22239484 3` UTR CR43765 - chr2L 22239542 3` UTR CR43765 - chr2L_7_22235001 chr2L_22235001 RAL-818 353 chr2L 22258616 22258648 chr2L 22260740 22260772 G6 9 2124 3.0 2.0 2.5 2.6 2156 chr2L 22258616 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260772 intergenic not near genes chr2L_9_22255001 chr2L_22255001 RAL-818 354 chr2R 291281 291311 chr2R 291402 291432 4 120 1.5 3.0 2.2 1.2 151 chr2R 291281 intergenic not near genes chr2R 291356 intergenic not near genes chr2R 291432 intergenic not near genes chr2R_4_290001 chr2R_290001 RAL-818 355 chr2R 1082372 1082379 chr2R 1087128 1087134 Doc 7 4765 5.0 3.5 4.2 1.3 4762 chr2R 1082372 intron rl + chr2R 1084753 intron rl + chr2R 1087134 intron rl + chr2R_7_1080001 chr2R_1080001 RAL-818 356 chr2R 1984371 1984390 chr2R 1984624 1984644 4 254 2.0 4.0 3.0 1.0 273 chr2R 1984371 intron CG17684 - chr2R 1984508 intron CG17684 - chr2R 1984644 intron CG17684 - chr2R_4_1980001 chr2R_1980001 RAL-818 357 chr2R 2015145 2015164 chr2R 2015214 2015241 5 75 2.0 0.5 1.2 2.3 96 chr2R 2015145 intron CG17684 - chr2R 2015193 intron CG17684 - chr2R 2015241 intron CG17684 - chr2R_5_2015001 chr2R_2015001 RAL-818 358 chr2R 2263749 2263779 chr2R 2263827 2263857 4 78 4.0 4.5 4.2 0.8 108 chr2R 2263749 intergenic not near genes chr2R 2263803 intergenic not near genes chr2R 2263857 intergenic not near genes chr2R_4_2260001 chr2R_2260001 RAL-818 359 chr2R 2498986 2498995 chr2R 2508133 2508142 roo 4 9147 2.0 0.5 1.2 1.8 9156 chr2R 2498986 intron MFS17 - chr2R 2503564 intron MFS17 - chr2R 2508142 intron MFS17 - chr2R_4_2500001 chr2R_2500001 RAL-818 360 chr2R 3144095 3144109 chr2R 3393373 3393386 Doc 5 249278 8.0 5.0 6.5 0.7 249291 chr2R 3144095 intron CG42596 + chr2R 3268740 intergenic not near genes chr2R 3393386 intergenic not near genes chr2R_5_3265001 chr2R_3265001 RAL-818 361 chr2R 3287383 3287410 chr2R 3287677 3287710 7 299 1.5 1.5 1.5 2.8 327 chr2R 3287383 intergenic not near genes chr2R 3287546 intergenic not near genes chr2R 3287710 intergenic not near genes chr2R_7_3285001 chr2R_3285001 RAL-818 362 chr2R 3292651 3292680 chr2R 3292729 3292759 10 79 5.0 7.5 6.2 1.4 108 chr2R 3292651 intergenic not near genes chr2R 3292705 intergenic not near genes chr2R 3292759 intergenic not near genes chr2R_10_3290001 chr2R_3290001 RAL-818 363 chr2R 4312960 4313117 chr2R 4313044 4313209 10 85 2.0 3.0 2.5 2.9 249 chr2R 4312960 intergenic not near genes chr2R 4313084 intergenic not near genes chr2R 4313209 intergenic not near genes chr2R_10_4310001 chr2R_4310001 RAL-818 364 chr2R 4518105 4518126 chr2R 4522245 4522265 5 4139 10.0 12.0 11.0 0.4 4160 chr2R 4518105 intergenic not near genes chr2R 4520185 intergenic not near genes chr2R 4522265 intergenic not near genes chr2R_5_4520001 chr2R_4520001 RAL-818 365 chr2R 4604559 4604580 chr2R 4604638 4604654 6 78 2.5 1.0 1.8 2.1 95 chr2R 4604559 intron p120ctn + chr2R 4604606 intron p120ctn + chr2R 4604654 intron p120ctn + chr2R_6_4600001 chr2R_4600001 RAL-818 366 chr2R 4621322 4621343 chr2R 4621862 4621881 4 535 3.0 3.5 3.2 1.0 559 chr2R 4621322 3` UTR CR44101 - chr2R 4621602 3` UTR CR44101 - chr2R 4621881 3` UTR CR44101 - chr2R_4_4620001 chr2R_4620001 RAL-818 367 chr2R 4622952 4622984 chr2R 4624109 4624143 1360 8 1158 7.0 1.5 4.2 1.5 1191 chr2R 4622952 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624143 intergenic not near genes chr2R_8_4620001 chr2R_4620001 RAL-818 368 chr2R 4624641 4624673 chr2R 4626546 4626578 Bica 7 1905 3.5 2.5 3.0 1.8 1937 chr2R 4624641 intergenic not near genes chr2R 4625610 intergenic not near genes chr2R 4626578 intergenic not near genes chr2R_7_4625001 chr2R_4625001 RAL-818 369 chr2R 4671154 4671169 chr2R 4671436 4671452 4 283 1.5 5.0 3.2 1.0 298 chr2R 4671154 intergenic not near genes chr2R 4671303 intergenic not near genes chr2R 4671452 intergenic CG17883 + chr2R_4_4670001 chr2R_4670001 RAL-818 370 chr2R 4887618 4887637 chr2R 4887814 4887833 5 196 0.5 1.0 0.8 2.8 215 chr2R 4887618 intergenic not near genes chr2R 4887726 intergenic not near genes chr2R 4887833 intergenic not near genes chr2R_5_4885001 chr2R_4885001 RAL-818 371 chr2R 4915799 4916008 chr2R 4915881 4916136 5 109 3.0 1.0 2.0 1.7 337 chr2R 4915799 intergenic not near genes chr2R 4915968 intergenic not near genes chr2R 4916136 intergenic not near genes chr2R_5_4915001 chr2R_4915001 RAL-818 372 chr2R 5040753 5040763 chr2R 5041243 5041253 6 490 0.0 0.5 0.2 5.0 500 chr2R 5040753 intergenic not near genes chr2R 5041003 intergenic not near genes chr2R 5041253 intergenic not near genes chr2R_6_5040001 chr2R_5040001 RAL-818 373 chr2R 5062775 5062791 chr2R 5062869 5062876 10 93 5.5 7.0 6.2 1.4 101 chr2R 5062775 intergenic not near genes chr2R 5062826 intergenic not near genes chr2R 5062876 intergenic not near genes chr2R_10_5060001 chr2R_5060001 RAL-818 374 chr2R 5062794 5062805 chr2R 5062867 5062899 5 85 3.5 5.5 4.5 0.9 105 chr2R 5062794 intergenic not near genes chr2R 5062846 intergenic not near genes chr2R 5062899 intergenic not near genes chr2R_5_5060001 chr2R_5060001 RAL-818 375 chr2R 5068876 5068906 chr2R 5071003 5071032 8 2127 6.0 8.5 7.2 1.0 2156 chr2R 5068876 intron TpnC41C - chr2R 5069954 intron TpnC41C - chr2R 5071032 intergenic not near genes chr2R_8_5065001 chr2R_5065001 RAL-818 376 chr2R 5079939 5079966 chr2R 5080053 5080077 8 110 6.0 6.5 6.2 1.1 138 chr2R 5079939 intergenic not near genes chr2R 5080008 intergenic not near genes chr2R 5080077 intergenic not near genes chr2R_8_5080001 chr2R_5080001 RAL-818 377 chr2R 5125262 5125276 chr2R 5125579 5125592 4 317 0.0 2.5 1.2 1.8 330 chr2R 5125262 intron gus - chr2R 5125427 intron gus - chr2R 5125592 intron gus - chr2R_4_5125001 chr2R_5125001 RAL-818 378 chr2R 5266118 5266151 chr2R 5266200 5266234 19 80 30.0 36.5 33.2 0.6 116 chr2R 5266118 intron d4 + chr2R 5266176 intron d4 + chr2R 5266234 intron d4 + chr2R_19_5265001 chr2R_5265001 RAL-818 379 chr2R 5472370 5472394 chr2R 5472464 5472488 11 91 4.0 3.0 3.5 2.4 118 chr2R 5472370 intron CG30440 - chr2R 5472429 intron CG30440 - chr2R 5472488 intron CG30440 - chr2R_11_5470001 chr2R_5470001 RAL-818 380 chr2R 5581399 5581425 chr2R 5627608 5627631 5 46208 4.0 7.0 5.5 0.8 46232 chr2R 5581399 intergenic not near genes chr2R 5604515 exon Fis1 - chr2R 5627631 intergenic not near genes chr2R_5_5600001 chr2R_5600001 RAL-818 381 chr2R 5621372 5621381 chr2R 5621452 5621459 5 79 2.0 3.0 2.5 1.4 87 chr2R 5621372 intergenic not near genes chr2R 5621416 intergenic not near genes chr2R 5621459 intergenic not near genes chr2R_5_5620001 chr2R_5620001 RAL-818 382 chr2R 5771464 5771498 chr2R 5771541 5771574 11 80 3.5 1.5 2.5 3.1 110 chr2R 5771464 intron Gp210 + chr2R 5771519 intron Gp210 + chr2R 5771574 intron Gp210 + chr2R_11_5770001 chr2R_5770001 RAL-818 383 chr2R 5772519 5772549 chr2R 5772597 5772628 9 78 1.0 0.5 0.8 5.0 109 chr2R 5772519 3` UTR Gp210 + chr2R 5772574 3` UTR Gp210 + chr2R 5772628 3` UTR Gp210 + chr2R_9_5770001 chr2R_5770001 RAL-818 384 chr2R 5812162 5812173 chr2R 5812239 5812250 7 77 6.5 4.5 5.5 1.1 88 chr2R 5812162 intron dpr12 + chr2R 5812206 intron dpr12 + chr2R 5812250 intron dpr12 + chr2R_7_5810001 chr2R_5810001 RAL-818 385 chr2R 5869278 5869304 chr2R 5874354 5874380 flea 7 5076 0.5 5.5 3.0 1.8 5102 chr2R 5869278 intergenic not near genes chr2R 5871829 intergenic not near genes chr2R 5874380 intergenic not near genes chr2R_7_5870001 chr2R_5870001 RAL-818 386 chr2R 5902161 5902179 chr2R 5909720 5909738 17.6 4 7559 1.0 0.5 0.8 2.2 7577 chr2R 5902161 intron CG43366 + chr2R 5905950 intron CG43366 + chr2R 5909738 intron CG43366 + chr2R_4_5905001 chr2R_5905001 RAL-818 387 chr2R 5947940 5947949 chr2R 5948091 5948099 4 150 4.0 0.0 2.0 1.3 159 chr2R 5947940 intergenic not near genes chr2R 5948020 intergenic not near genes chr2R 5948099 intergenic not near genes chr2R_4_5945001 chr2R_5945001 RAL-818 388 chr2R 6124188 6124223 chr2R 6124286 6124321 8 98 1.0 3.0 2.0 2.7 133 chr2R 6124188 intron EcR - chr2R 6124254 intron EcR - chr2R 6124321 intron EcR - chr2R_8_6120001 chr2R_6120001 RAL-818 389 chr2R 6129324 6129355 chr2R 6129402 6129432 6 78 3.5 1.0 2.2 1.9 108 chr2R 6129324 intron EcR - chr2R 6129378 intron EcR - chr2R 6129432 intron EcR - chr2R_6_6125001 chr2R_6125001 RAL-818 390 chr2R 6168196 6168224 chr2R 6168278 6168306 7 82 1.0 0.5 0.8 3.9 110 chr2R 6168196 intron EcR - chr2R 6168251 intron EcR - chr2R 6168306 intron EcR - chr2R_7_6165001 chr2R_6165001 RAL-818 391 chr2R 6494524 6494539 chr2R 6499286 6499300 F-element 4 4762 4.5 1.5 3.0 1.0 4776 chr2R 6494524 intergenic not near genes chr2R 6496912 intergenic not near genes chr2R 6499300 intergenic not near genes chr2R_4_6495001 chr2R_6495001 RAL-818 392 chr2R 6633199 6633231 chr2R 6633276 6633308 8 77 1.5 2.5 2.0 2.7 109 chr2R 6633199 intergenic Vha16-1 -,Trap1 - chr2R 6633254 intergenic Vha16-1 -,Trap1 - chr2R 6633308 intergenic Vha16-1 -,Trap1 - chr2R_8_6630001 chr2R_6630001 RAL-818 393 chr2R 6806794 6806815 chr2R 6806878 6806900 8 84 1.0 3.0 2.0 2.7 106 chr2R 6806794 intergenic not near genes chr2R 6806847 intergenic not near genes chr2R 6806900 intergenic not near genes chr2R_8_6805001 chr2R_6805001 RAL-818 394 chr2R 7091209 7091242 chr2R 7091291 7091322 4 82 0.5 0.5 0.5 2.7 113 chr2R 7091209 intron esn + chr2R 7091266 intron esn + chr2R 7091322 intron esn + chr2R_4_7090001 chr2R_7090001 RAL-818 395 chr2R 7128603 7128629 chr2R 7129405 7129431 13 801 4.0 21.0 12.5 1.0 828 chr2R 7128603 exon Cyp9b1 - chr2R 7129017 exon Cyp9b1 - chr2R 7129431 exon Cyp9b1 - chr2R_13_7125001 chr2R_7125001 RAL-818 396 chr2R 7128663 7128684 chr2R 7129550 7129569 6 886 11.0 27.5 19.2 0.3 906 chr2R 7128663 exon Cyp9b1 - chr2R 7129116 exon Cyp9b1 - chr2R 7129569 intron Cyp9b1 - chr2R_6_7125001 chr2R_7125001 RAL-818 397 chr2R 7175505 7175530 chr2R 7175584 7175609 13 78 2.0 4.5 3.2 3.1 104 chr2R 7175505 intron pk + chr2R 7175557 intron pk + chr2R 7175609 intron pk + chr2R_13_7175001 chr2R_7175001 RAL-818 398 chr2R 7226646 7226660 chr2R 7226740 7226755 5 92 5.0 5.0 5.0 0.8 109 chr2R 7226646 intergenic not near genes chr2R 7226700 intergenic not near genes chr2R 7226755 intergenic not near genes chr2R_5_7225001 chr2R_7225001 RAL-818 399 chr2R 7226663 7226671 chr2R 7226732 7226766 7 88 2.5 3.5 3.0 1.8 103 chr2R 7226663 intergenic not near genes chr2R 7226714 intergenic not near genes chr2R 7226766 intergenic not near genes chr2R_7_7225001 chr2R_7225001 RAL-818 400 chr2R 7235825 7235848 chr2R 7240917 7240937 jockey 10 5091 3.5 2.0 2.8 2.6 5112 chr2R 7235825 intergenic not near genes chr2R 7238381 intergenic not near genes chr2R 7240937 intergenic not near genes chr2R_10_7235001 chr2R_7235001 RAL-818 401 chr2R 7418150 7418162 chr2R 7418229 7418241 4 79 1.0 2.5 1.8 1.4 91 chr2R 7418150 intergenic not near genes chr2R 7418196 intergenic not near genes chr2R 7418241 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-818 402 chr2R 7456995 7457026 chr2R 7457082 7457114 18 88 3.0 2.5 2.8 4.7 119 chr2R 7456995 intron Inos - chr2R 7457054 intron Inos - chr2R 7457114 intron Inos - chr2R_18_7455001 chr2R_7455001 RAL-818 403 chr2R 7608417 7608424 chr2R 7613620 7613627 I-element 4 5203 3.0 0.0 1.5 1.6 5210 chr2R 7608417 intron CG1358 - chr2R 7611022 intron CG1358 - chr2R 7613627 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-818 404 chr2R 7629302 7629315 chr2R 7629420 7629433 6 118 1.0 0.0 0.5 4.0 131 chr2R 7629302 intron CG43340 + chr2R 7629368 intron CG43340 + chr2R 7629433 intron CG43340 + chr2R_6_7625001 chr2R_7625001 RAL-818 405 chr2R 7642877 7642892 chr2R 7642957 7642972 8 80 2.5 4.0 3.2 1.9 95 chr2R 7642877 intron CG43340 + chr2R 7642924 intron CG43340 + chr2R 7642972 intron CG43340 + chr2R_8_7640001 chr2R_7640001 RAL-818 406 chr2R 7742625 7742647 chr2R 7742878 7742892 5 253 1.5 3.0 2.2 1.6 267 chr2R 7742625 intron,intron CG30497 -,CG45093 - chr2R 7742758 intron,intron CG30497 -,CG45093 - chr2R 7742892 intron,intron CG30497 -,CG45093 - chr2R_5_7740001 chr2R_7740001 RAL-818 407 chr2R 7815671 7815702 chr2R 7822139 7822171 Burdock 9 6469 2.5 3.0 2.8 2.4 6500 chr2R 7815671 intergenic CG1882 + chr2R 7818921 intergenic not near genes chr2R 7822171 3` UTR cathD - chr2R_9_7815001 chr2R_7815001 RAL-818 408 chr2R 7874854 7874878 chr2R 7875157 7875185 9 308 1.5 3.0 2.2 2.8 331 chr2R 7874854 intron Dgk - chr2R 7875020 intron Dgk - chr2R 7875185 intron Dgk - chr2R_9_7875001 chr2R_7875001 RAL-818 409 chr2R 7889318 7889326 chr2R 7891900 7891908 6 2582 8.5 20.0 14.2 0.4 2590 chr2R 7889318 intergenic not near genes chr2R 7890613 5` UTR CG30377 + chr2R 7891908 intron CG30377 + chr2R_6_7890001 chr2R_7890001 RAL-818 410 chr2R 7888396 7888410 chr2R 7892615 7892631 6 4222 21.0 20.5 20.8 0.3 4235 chr2R 7888396 intergenic not near genes chr2R 7890514 5` UTR CG30377 + chr2R 7892631 intron CG30377 + chr2R_6_7890001 chr2R_7890001 RAL-818 411 chr2R 7916429 7916457 chr2R 7916514 7916542 4 82 3.0 4.5 3.8 0.8 113 chr2R 7916429 5` UTR CG12159 - chr2R 7916486 intergenic CG12159 -,Cul1 + chr2R 7916542 intergenic CG12159 -,Cul1 + chr2R_4_7915001 chr2R_7915001 RAL-818 412 chr2R 8015654 8015682 chr2R 8017677 8017703 7 2015 1.5 2.5 2.0 2.3 2049 chr2R 8015654 intergenic mir-4981 + chr2R 8016678 intergenic not near genes chr2R 8017703 intergenic not near genes chr2R_7_8015001 chr2R_8015001 RAL-818 413 chr2R 8203746 8203773 chr2R 8203836 8203865 6 92 3.5 0.0 1.8 2.1 119 chr2R 8203746 intron LRP1 + chr2R 8203806 intron LRP1 + chr2R 8203865 intron LRP1 + chr2R_6_8200001 chr2R_8200001 RAL-818 414 chr2R 8218539 8218568 chr2R 8218694 8218723 4 150 3.0 2.5 2.8 1.1 184 chr2R 8218539 intron LRP1 + chr2R 8218631 intron LRP1 + chr2R 8218723 intron LRP1 + chr2R_4_8215001 chr2R_8215001 RAL-818 415 chr2R 8330871 8330890 chr2R 8331357 8331376 roo 8 486 5.5 1.5 3.5 1.8 505 chr2R 8330871 intron pdm3 + chr2R 8331124 intron pdm3 + chr2R 8331376 intron pdm3 + chr2R_8_8330001 chr2R_8330001 RAL-818 416 chr2R 8338646 8338665 chr2R 8338728 8338747 6 81 0.5 2.5 1.5 2.4 101 chr2R 8338646 intron pdm3 + chr2R 8338696 intron pdm3 + chr2R 8338747 intron pdm3 + chr2R_6_8335001 chr2R_8335001 RAL-818 417 chr2R 8405492 8405524 chr2R 8405822 8405854 9 330 1.5 1.5 1.5 3.6 362 chr2R 8405492 intron CG2121 - chr2R 8405673 intron CG2121 - chr2R 8405854 intron CG2121 - chr2R_9_8405001 chr2R_8405001 RAL-818 418 chr2R 8406079 8406105 chr2R 8406156 8406182 10 76 2.5 5.5 4.0 2.0 103 chr2R 8406079 intron CG2121 - chr2R 8406130 intron CG2121 - chr2R 8406182 intron CG2121 - chr2R_10_8405001 chr2R_8405001 RAL-818 419 chr2R 8454929 8454961 chr2R 8455872 8455904 12 944 37.5 18.5 28.0 0.4 975 chr2R 8454929 exon Mal-A2 + chr2R 8455416 exon Mal-A2 + chr2R 8455904 intergenic Mal-A3 -,Mal-A2 + chr2R_12_8455001 chr2R_8455001 RAL-818 420 chr2R 8483979 8483993 chr2R 8484048 8484069 5 73 1.0 2.0 1.5 2.0 90 chr2R 8483979 intron mtt - chr2R 8484024 intron mtt - chr2R 8484069 intron mtt - chr2R_5_8480001 chr2R_8480001 RAL-818 421 chr2R 8508768 8508790 chr2R 8508850 8508868 4 80 3.5 3.0 3.2 1.0 100 chr2R 8508768 intron mtt - chr2R 8508818 intron mtt - chr2R 8508868 intron mtt - chr2R_4_8505001 chr2R_8505001 RAL-818 422 chr2R 8536201 8536231 chr2R 8536433 8536441 9 229 2.0 4.0 3.0 2.2 240 chr2R 8536201 intergenic not near genes chr2R 8536321 intergenic not near genes chr2R 8536441 intergenic not near genes chr2R_9_8535001 chr2R_8535001 RAL-818 423 chr2R 8635909 8635932 chr2R 8635987 8636008 4 78 0.0 1.5 0.8 2.2 99 chr2R 8635909 intergenic not near genes chr2R 8635958 intergenic not near genes chr2R 8636008 intergenic not near genes chr2R_4_8635001 chr2R_8635001 RAL-818 424 chr2R 8717558 8717586 chr2R 8717789 8717817 5 230 1.5 2.0 1.8 1.8 259 chr2R 8717558 3` UTR PGRP-SC2 + chr2R 8717688 3` UTR PGRP-SC2 + chr2R 8717817 intergenic PGRP-SC2 +,CG14767 - chr2R_5_8715001 chr2R_8715001 RAL-818 425 chr2R 8722763 8722789 chr2R 8723004 8723030 pogo 13 238 4.0 5.5 4.8 2.2 267 chr2R 8722763 intron CG14767 - chr2R 8722896 intron CG14767 - chr2R 8723030 intron CG14767 - chr2R_13_8720001 chr2R_8720001 RAL-818 426 chr2R 9052708 9052737 chr2R 9052789 9052816 8 81 0.0 4.5 2.2 2.5 108 chr2R 9052708 intron CG13743 - chr2R 9052762 intron CG13743 - chr2R 9052816 intron CG13743 - chr2R_8_9050001 chr2R_9050001 RAL-818 427 chr2R 9065915 9065943 chr2R 9065997 9066024 8 79 2.5 3.0 2.8 2.1 109 chr2R 9065915 intron ana + chr2R 9065970 intron ana + chr2R 9066024 intron ana + chr2R_8_9065001 chr2R_9065001 RAL-818 428 chr2R 9151305 9151335 chr2R 9157775 9157805 Burdock 7 6470 4.0 3.5 3.8 1.5 6500 chr2R 9151305 3` UTR CG30345 + chr2R 9154555 intergenic not near genes chr2R 9157805 intergenic CG8008 - chr2R_7_9150001 chr2R_9150001 RAL-818 429 chr2R 9212693 9212725 chr2R 9213179 9213188 roo 9 482 6.0 3.0 4.5 1.6 495 chr2R 9212693 intergenic CR45309 + chr2R 9212940 intergenic CR45309 + chr2R 9213188 5` UTR CR45309 + chr2R_9_9210001 chr2R_9210001 RAL-818 430 chr2R 9216270 9216276 chr2R 9216373 9216382 4 105 0.0 2.5 1.2 1.8 112 chr2R 9216270 intergenic not near genes chr2R 9216326 intergenic not near genes chr2R 9216382 intergenic not near genes chr2R_4_9215001 chr2R_9215001 RAL-818 431 chr2R 9364376 9364394 chr2R 9364443 9364474 14 75 1.0 4.0 2.5 4.0 98 chr2R 9364376 intron CG13954 - chr2R 9364425 intron CG13954 - chr2R 9364474 intron CG13954 - chr2R_14_9360001 chr2R_9360001 RAL-818 432 chr2R 9368133 9368145 chr2R 9368209 9368221 7 74 4.0 0.5 2.2 2.2 88 chr2R 9368133 intron CG13954 - chr2R 9368177 intron CG13954 - chr2R 9368221 intron CG13954 - chr2R_7_9365001 chr2R_9365001 RAL-818 433 chr2R 9368146 9368153 chr2R 9368208 9368229 6 70 2.0 0.5 1.2 2.7 83 chr2R 9368146 intron CG13954 - chr2R 9368188 intron CG13954 - chr2R 9368229 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-818 434 chr2R 9480085 9480100 chr2R 9490616 9490631 roo 4 10530 1.0 2.0 1.5 1.6 10546 chr2R 9480085 intergenic not near genes chr2R 9485358 intergenic not near genes chr2R 9490631 intergenic not near genes chr2R_4_9485001 chr2R_9485001 RAL-818 435 chr2R 9726612 9726622 chr2R 9734163 9734173 17.6 4 7551 4.0 1.5 2.8 1.1 7561 chr2R 9726612 intron sqa - chr2R 9730392 intron sqa - chr2R 9734173 intron sqa - chr2R_4_9730001 chr2R_9730001 RAL-818 436 chr2R 9746553 9746585 chr2R 9747886 9747918 14 1334 20.5 25.5 23.0 0.6 1365 chr2R 9746553 5` UTR sqa - chr2R 9747236 5` UTR sqa - chr2R 9747918 5` UTR sqa - chr2R_14_9745001 chr2R_9745001 RAL-818 437 chr2R 9788009 9788040 chr2R 9788397 9788428 11 389 1.5 3.0 2.2 3.4 419 chr2R 9788009 intron CG1688 - chr2R 9788218 intron CG1688 - chr2R 9788428 intron CG1688 - chr2R_11_9785001 chr2R_9785001 RAL-818 438 chr2R 9930749 9930777 chr2R 9930845 9930875 10 97 2.5 1.5 2.0 3.3 126 chr2R 9930749 intron Mef2 - chr2R 9930812 intron Mef2 - chr2R 9930875 intron Mef2 - chr2R_10_9930001 chr2R_9930001 RAL-818 439 chr2R 9945438 9945468 chr2R 9945633 9945664 BS 8 196 2.5 2.0 2.2 2.5 226 chr2R 9945438 intron Mef2 - chr2R 9945551 intron Mef2 - chr2R 9945664 intron Mef2 - chr2R_8_9945001 chr2R_9945001 RAL-818 440 chr2R 10005562 10005578 chr2R 10005659 10005674 4 97 3.0 1.0 2.0 1.3 112 chr2R 10005562 intron Pka-R2 - chr2R 10005618 intron Pka-R2 - chr2R 10005674 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-818 441 chr2R 10005858 10005884 chr2R 10007023 10007032 1360 10 1162 3.5 4.5 4.0 2.0 1174 chr2R 10005858 intron Pka-R2 - chr2R 10006445 intron Pka-R2 - chr2R 10007032 intron Pka-R2 - chr2R_10_10005001 chr2R_10005001 RAL-818 442 chr2R 10171112 10171137 chr2R 10171196 10171221 5 84 1.0 2.5 1.8 1.8 109 chr2R 10171112 intron KCNQ - chr2R 10171166 intron KCNQ - chr2R 10171221 intron KCNQ - chr2R_5_10170001 chr2R_10170001 RAL-818 443 chr2R 10176877 10176908 chr2R 10186047 10186078 roo 8 9170 2.0 0.5 1.2 3.6 9201 chr2R 10176877 intron KCNQ - chr2R 10181478 intron KCNQ - chr2R 10186078 intron KCNQ - chr2R_8_10180001 chr2R_10180001 RAL-818 444 chr2R 10269565 10269599 chr2R 10269659 10269691 7 94 2.5 3.5 3.0 1.8 126 chr2R 10269565 intron CAP + chr2R 10269628 intron CAP + chr2R 10269691 intron CAP + chr2R_7_10265001 chr2R_10265001 RAL-818 445 chr2R 10313322 10313350 chr2R 10313409 10313438 8 88 1.0 3.0 2.0 2.7 116 chr2R 10313322 intergenic not near genes chr2R 10313380 intergenic not near genes chr2R 10313438 intergenic Ndg + chr2R_8_10310001 chr2R_10310001 RAL-818 446 chr2R 10429021 10429051 chr2R 10429096 10429127 9 76 0.0 3.5 1.8 3.2 106 chr2R 10429021 intergenic not near genes chr2R 10429074 intergenic not near genes chr2R 10429127 intergenic not near genes chr2R_9_10425001 chr2R_10425001 RAL-818 447 chr2R 10454095 10454124 chr2R 10454172 10454201 7 77 2.0 2.5 2.2 2.2 106 chr2R 10454095 intron,intron Galphao +,Cyp49a1 - chr2R 10454148 intron,intron Galphao +,Cyp49a1 - chr2R 10454201 intron,intron Galphao +,Cyp49a1 - chr2R_7_10450001 chr2R_10450001 RAL-818 448 chr2R 10644061 10644081 chr2R 10644139 10644159 4 78 1.5 0.5 1.0 2.0 98 chr2R 10644061 intron Git - chr2R 10644110 intron Git - chr2R 10644159 intron Git - chr2R_4_10640001 chr2R_10640001 RAL-818 449 chr2R 10772280 10772308 chr2R 10772384 10772409 8 100 0.5 2.5 1.5 3.2 129 chr2R 10772280 intron CG33144 - chr2R 10772344 intron CG33144 - chr2R 10772409 intron CG33144 - chr2R_8_10770001 chr2R_10770001 RAL-818 450 chr2R 10790147 10790177 chr2R 10790235 10790265 10 88 4.0 2.5 3.2 2.4 118 chr2R 10790147 intron CG33144 - chr2R 10790206 intron CG33144 - chr2R 10790265 intron CG33144 - chr2R_10_10790001 chr2R_10790001 RAL-818 451 chr2R 10851184 10851215 chr2R 10851269 10851300 4 85 1.5 1.0 1.2 1.8 116 chr2R 10851184 intron CG30015 - chr2R 10851242 intron CG30015 - chr2R 10851300 intron CG30015 - chr2R_4_10850001 chr2R_10850001 RAL-818 452 chr2R 10948024 10948056 chr2R 10955575 10955607 17.6 7 7550 1.5 5.0 3.2 1.7 7583 chr2R 10948024 intergenic not near genes chr2R 10951816 intergenic not near genes chr2R 10955607 intergenic not near genes chr2R_7_10950001 chr2R_10950001 RAL-818 453 chr2R 10959097 10959112 chr2R 10959175 10959190 4 78 0.0 0.5 0.2 3.3 93 chr2R 10959097 intergenic not near genes chr2R 10959144 intergenic not near genes chr2R 10959190 intergenic not near genes chr2R_4_10955001 chr2R_10955001 RAL-818 454 chr2R 11009812 11009844 chr2R 11018986 11019011 roo 4 9171 2.0 4.5 3.2 1.0 9199 chr2R 11009812 intron luna - chr2R 11014412 intron luna - chr2R 11019011 intron luna - chr2R_4_11010001 chr2R_11010001 RAL-818 455 chr2R 11019896 11019912 chr2R 11024943 11024971 jockey 6 5057 1.5 2.5 2.0 2.0 5075 chr2R 11019896 intron luna - chr2R 11022434 intron luna - chr2R 11024971 intron luna - chr2R_6_11020001 chr2R_11020001 RAL-818 456 chr2R 11049532 11049546 chr2R 11049596 11049596 5 67 2.5 6.0 4.2 1.0 64 chr2R 11049532 intron luna - chr2R 11049564 intron luna - chr2R 11049596 intron luna - chr2R_5_11045001 chr2R_11045001 RAL-818 457 chr2R 11059626 11059658 chr2R 11059704 11059736 6 78 1.5 0.0 0.8 3.3 110 chr2R 11059626 intron luna - chr2R 11059681 intron luna - chr2R 11059736 intron luna - chr2R_6_11055001 chr2R_11055001 RAL-818 458 chr2R 11128427 11128442 chr2R 11128818 11128834 9 391 3.0 5.5 4.2 1.7 407 chr2R 11128427 intergenic not near genes chr2R 11128630 intergenic not near genes chr2R 11128834 intergenic not near genes chr2R_9_11125001 chr2R_11125001 RAL-818 459 chr2R 11161116 11161133 chr2R 11161356 11161389 7 254 4.0 2.5 3.2 1.7 273 chr2R 11161116 intron,intron CG13229 -,shn + chr2R 11161252 intron,intron CG13229 -,shn + chr2R 11161389 intron,intron CG13229 -,shn + chr2R_7_11160001 chr2R_11160001 RAL-818 460 chr2R 11207819 11207846 chr2R 11208012 11208038 BS 9 192 5.5 2.5 4.0 1.8 219 chr2R 11207819 intron shn + chr2R 11207928 intron shn + chr2R 11208038 intron shn + chr2R_9_11205001 chr2R_11205001 RAL-818 461 chr2R 11265725 11265729 chr2R 11265806 11265811 4 82 3.5 0.0 1.8 1.4 86 chr2R 11265725 exon Cpr47Ee + chr2R 11265768 intron Cpr47Ee + chr2R 11265811 intron Cpr47Ee + chr2R_4_11265001 chr2R_11265001 RAL-818 462 chr2R 11297621 11297648 chr2R 11301942 11301969 flea 4 4321 6.0 2.5 4.2 0.8 4348 chr2R 11297621 intergenic CG42336 - chr2R 11299795 intergenic not near genes chr2R 11301969 5` UTR CG7741 + chr2R_4_11295001 chr2R_11295001 RAL-818 463 chr2R 11391240 11391275 chr2R 11391316 11391322 9 71 4.5 4.0 4.2 1.7 82 chr2R 11391240 intron sprt - chr2R 11391281 intron sprt - chr2R 11391322 intron sprt - chr2R_9_11390001 chr2R_11390001 RAL-818 464 chr2R 11415534 11415546 chr2R 11418672 11418694 opus 6 3146 2.5 5.0 3.8 1.2 3160 chr2R 11415534 intron Drip - chr2R 11417114 intron Drip - chr2R 11418694 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-818 465 chr2R 11472648 11472678 chr2R 11473845 11473875 pogo 8 1196 1.5 3.5 2.5 2.3 1227 chr2R 11472648 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473875 intergenic not near genes chr2R_8_11470001 chr2R_11470001 RAL-818 466 chr2R 11494326 11494333 chr2R 11494409 11494416 5 83 0.0 1.0 0.5 3.3 90 chr2R 11494326 intron inv + chr2R 11494371 intron inv + chr2R 11494416 intron inv + chr2R_5_11490001 chr2R_11490001 RAL-818 467 chr2R 11631398 11631413 chr2R 11631478 11631493 4 80 2.0 2.0 2.0 1.3 95 chr2R 11631398 intron CG9005 - chr2R 11631446 intron CG9005 - chr2R 11631493 intron CG9005 - chr2R_4_11630001 chr2R_11630001 RAL-818 468 chr2R 11672682 11672708 chr2R 11676124 11676157 4 3445 17.0 15.0 16.0 0.2 3475 chr2R 11672682 intron,intron Roc2 -,Tret1-1 + chr2R 11674420 intron,exon Roc2 -,Tret1-1 + chr2R 11676157 intron,intron Roc2 -,Tret1-2 + chr2R_4_11670001 chr2R_11670001 RAL-818 469 chr2R 11704041 11704069 chr2R 11704122 11704128 5 70 0.5 0.5 0.5 3.3 87 chr2R 11704041 intergenic not near genes chr2R 11704084 intergenic not near genes chr2R 11704128 intergenic not near genes chr2R_5_11700001 chr2R_11700001 RAL-818 470 chr2R 11760732 11760757 chr2R 11760862 11760888 10 131 4.0 5.0 4.5 1.8 156 chr2R 11760732 intron ths + chr2R 11760810 intron ths + chr2R 11760888 intron ths + chr2R_10_11760001 chr2R_11760001 RAL-818 471 chr2R 11775937 11775947 chr2R 11776020 11776030 4 82 4.0 4.0 4.0 0.8 93 chr2R 11775937 intron ths + chr2R 11775984 intron ths + chr2R 11776030 intron ths + chr2R_4_11775001 chr2R_11775001 RAL-818 472 chr2R 11775956 11775966 chr2R 11776019 11776046 4 77 0.5 4.0 2.2 1.2 90 chr2R 11775956 intron ths + chr2R 11776001 intron ths + chr2R 11776046 intron ths + chr2R_4_11775001 chr2R_11775001 RAL-818 473 chr2R 11797070 11797102 chr2R 11797230 11797262 9 160 3.5 2.0 2.8 2.4 192 chr2R 11797070 intron ths + chr2R 11797166 intron ths + chr2R 11797262 intron ths + chr2R_9_11795001 chr2R_11795001 RAL-818 474 chr2R 11945484 11945515 chr2R 11945771 11945775 4 278 2.5 3.0 2.8 1.1 291 chr2R 11945484 intron CG13188 + chr2R 11945630 intron CG13188 + chr2R 11945775 intron CG13188 + chr2R_4_11945001 chr2R_11945001 RAL-818 475 chr2R 8518781 8518803 chr2R 12066175 12066197 8 3547396 7.5 10.5 9.0 0.8 3547416 chr2R 8518781 intron mtt - chr2R 10292489 intron CAP + chr2R 12066197 intron CG8888 - chr2R_8_10290001 chr2R_10290001 RAL-818 476 chr2R 12096835 12096850 chr2R 12097287 12097302 6 451 5.5 4.0 4.8 1.0 467 chr2R 12096835 intron jeb - chr2R 12097068 intron jeb - chr2R 12097302 intron jeb - chr2R_6_12095001 chr2R_12095001 RAL-818 477 chr2R 12120422 12120436 chr2R 12120486 12120513 5 72 1.0 4.5 2.8 1.3 91 chr2R 12120422 intergenic not near genes chr2R 12120468 intergenic not near genes chr2R 12120513 intergenic not near genes chr2R_5_12120001 chr2R_12120001 RAL-818 478 chr2R 12186001 12186037 chr2R 12186096 12186129 6 93 0.5 1.5 1.0 3.0 128 chr2R 12186001 intron Cyp6g1 + chr2R 12186065 intron Cyp6g1 + chr2R 12186129 intron Cyp6g1 + chr2R_6_12185001 chr2R_12185001 RAL-818 479 chr2R 12187472 12187493 chr2R 12190088 12190109 15 2618 82.0 62.5 72.2 0.2 2637 chr2R 12187472 exon Cyp6g1 + chr2R 12188790 exon Cyp6g2 - chr2R 12190109 exon Cyp6g2 - chr2R_15_12185001 chr2R_12185001 RAL-818 480 chr2R 12187471 12187507 chr2R 12190110 12190123 13 2626 91.0 52.0 71.5 0.2 2652 chr2R 12187471 exon Cyp6g1 + chr2R 12188797 exon Cyp6g2 - chr2R 12190123 exon Cyp6g2 - chr2R_13_12185001 chr2R_12185001 RAL-818 481 chr2R 12217576 12217603 chr2R 12217657 12217683 6 78 0.0 1.5 0.8 3.3 107 chr2R 12217576 intergenic not near genes chr2R 12217630 intergenic not near genes chr2R 12217683 intergenic not near genes chr2R_6_12215001 chr2R_12215001 RAL-818 482 chr2R 12481142 12481165 chr2R 12482941 12482967 roo 7 1797 3.0 3.0 3.0 1.8 1825 chr2R 12481142 exon Dh44-R2 + chr2R 12482054 intron Dh44-R2 + chr2R 12482967 intron Dh44-R2 + chr2R_7_12480001 chr2R_12480001 RAL-818 483 chr2R 12501703 12501716 chr2R 12503865 12503878 Rt1c 6 2160 2.5 4.0 3.2 1.4 2175 chr2R 12501703 intron fdl - chr2R 12502790 intron fdl - chr2R 12503878 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-818 484 chr2R 12504151 12504168 chr2R 12504228 12504244 6 77 7.0 6.0 6.5 0.8 93 chr2R 12504151 intron fdl - chr2R 12504198 intron fdl - chr2R 12504244 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-818 485 chr2R 12819451 12819478 chr2R 12824520 12824533 jockey 6 5066 3.5 4.5 4.0 1.2 5082 chr2R 12819451 intergenic not near genes chr2R 12821992 intergenic not near genes chr2R 12824533 intergenic not near genes chr2R_6_12820001 chr2R_12820001 RAL-818 486 chr2R 13017712 13017746 chr2R 13017802 13017836 13 90 3.0 0.5 1.8 4.6 124 chr2R 13017712 intergenic not near genes chr2R 13017774 intergenic not near genes chr2R 13017836 intergenic not near genes chr2R_13_13015001 chr2R_13015001 RAL-818 487 chr2R 13054627 13054645 chr2R 13054835 13054853 6 207 0.0 3.0 1.5 2.4 226 chr2R 13054627 intergenic not near genes chr2R 13054740 intergenic not near genes chr2R 13054853 intergenic Drl-2 - chr2R_6_13050001 chr2R_13050001 RAL-818 488 chr2R 13123450 13123484 chr2R 13123549 13123568 9 97 3.0 4.5 3.8 1.9 118 chr2R 13123450 intron CG13325 + chr2R 13123509 exon CG13325 + chr2R 13123568 exon CG13325 + chr2R_9_13120001 chr2R_13120001 RAL-818 489 chr2R 13136838 13136868 chr2R 13141636 13141665 Doc 12 4798 4.0 4.0 4.0 2.4 4827 chr2R 13136838 exon Cap-G + chr2R 13139252 intron Cap-G + chr2R 13141665 intron Cap-G + chr2R_12_13135001 chr2R_13135001 RAL-818 490 chr2R 13249587 13249599 chr2R 13249676 13249687 4 88 0.0 2.0 1.0 2.0 100 chr2R 13249587 intron CG4712 - chr2R 13249637 intron CG4712 - chr2R 13249687 intron CG4712 - chr2R_4_13245001 chr2R_13245001 RAL-818 491 chr2R 13364712 13364732 chr2R 13364798 13364818 5 86 1.5 4.0 2.8 1.3 106 chr2R 13364712 intergenic not near genes chr2R 13364765 intergenic not near genes chr2R 13364818 intergenic not near genes chr2R_5_13360001 chr2R_13360001 RAL-818 492 chr2R 13438860 13438893 chr2R 13440178 13440211 19 1320 15.5 34.0 24.8 0.7 1351 chr2R 13438860 5` UTR CG42321 - chr2R 13439536 3` UTR cnn - chr2R 13440211 exon cnn - chr2R_19_13435001 chr2R_13435001 RAL-818 493 chr2R 13547094 13547108 chr2R 13547289 13547303 6 195 2.5 3.5 3.0 1.5 209 chr2R 13547094 intron CG6145 - chr2R 13547198 intron CG6145 - chr2R 13547303 intron CG6145 - chr2R_6_13545001 chr2R_13545001 RAL-818 494 chr2R 13561075 13561099 chr2R 13561288 13561312 8 213 0.0 1.5 0.8 4.4 237 chr2R 13561075 intergenic CG13334 + chr2R 13561194 intergenic CG13334 + chr2R 13561312 intergenic not near genes chr2R_8_13560001 chr2R_13560001 RAL-818 495 chr2R 13589999 13590013 chr2R 13590098 13590130 12 101 23.0 23.5 23.2 0.5 131 chr2R 13589999 intron,intron CG6191 -,CG45088 - chr2R 13590064 intron,intron CG6191 -,CG45088 - chr2R 13590130 intron,intron CG6191 -,CG45088 - chr2R_12_13590001 chr2R_13590001 RAL-818 496 chr2R 13692324 13692352 chr2R 13692408 13692436 6 84 2.0 2.5 2.2 1.9 112 chr2R 13692324 intron,intron fas +,CG6220 - chr2R 13692380 intron,intron fas +,CG6220 - chr2R 13692436 intron,intron fas +,CG6220 - chr2R_6_13690001 chr2R_13690001 RAL-818 497 chr2R 13728135 13728162 chr2R 13735792 13735819 opus 4 7657 1.5 2.5 2.0 1.3 7684 chr2R 13728135 intron fas + chr2R 13731977 intron fas + chr2R 13735819 intron fas + chr2R_4_13730001 chr2R_13730001 RAL-818 498 chr2R 13749505 13749530 chr2R 13749590 13749619 9 87 2.0 1.5 1.8 3.2 114 chr2R 13749505 intergenic fas + chr2R 13749562 intergenic fas + chr2R 13749619 intergenic fas + chr2R_9_13745001 chr2R_13745001 RAL-818 499 chr2R 13768992 13769010 chr2R 13769091 13769109 12 99 1.5 9.0 5.2 1.9 117 chr2R 13768992 intergenic not near genes chr2R 13769050 intergenic not near genes chr2R 13769109 intergenic not near genes chr2R_12_13765001 chr2R_13765001 RAL-818 500 chr2R 13793357 13793364 chr2R 13793448 13793454 4 91 5.5 0.5 3.0 1.0 97 chr2R 13793357 intergenic not near genes chr2R 13793406 intergenic not near genes chr2R 13793454 intergenic not near genes chr2R_4_13790001 chr2R_13790001 RAL-818 501 chr2R 13888760 13888783 chr2R 13888837 13888860 6 74 2.5 0.0 1.2 2.7 100 chr2R 13888760 intron shot - chr2R 13888810 intron shot - chr2R 13888860 intron shot - chr2R_6_13885001 chr2R_13885001 RAL-818 502 chr2R 13905616 13905635 chr2R 13907583 13907617 Rt1a 6 1979 2.0 4.0 3.0 1.5 2001 chr2R 13905616 intron shot - chr2R 13906616 intron shot - chr2R 13907617 intron shot - chr2R_6_13905001 chr2R_13905001 RAL-818 503 chr2R 13931056 13931063 chr2R 13931295 13931304 4 240 3.5 3.0 3.2 1.0 248 chr2R 13931056 intron shot - chr2R 13931180 intron shot - chr2R 13931304 intron shot - chr2R_4_13930001 chr2R_13930001 RAL-818 504 chr2R 13966585 13966596 chr2R 13966666 13966679 6 83 3.0 6.0 4.5 1.1 94 chr2R 13966585 intron Cp1 + chr2R 13966632 intron Cp1 + chr2R 13966679 intron Cp1 + chr2R_6_13965001 chr2R_13965001 RAL-818 505 chr2R 13986889 13986909 chr2R 13986978 13986998 5 89 0.5 3.5 2.0 1.7 109 chr2R 13986889 intron RN-tre - chr2R 13986944 intron RN-tre - chr2R 13986998 intron RN-tre - chr2R_5_13985001 chr2R_13985001 RAL-818 506 chr2R 14171480 14171494 chr2R 14171561 14171584 5 88 3.0 3.0 3.0 1.2 104 chr2R 14171480 intron CG8331 + chr2R 14171532 intron CG8331 + chr2R 14171584 intron CG8331 + chr2R_5_14170001 chr2R_14170001 RAL-818 507 chr2R 14175985 14175998 chr2R 14176295 14176308 4 310 0.5 1.5 1.0 2.0 323 chr2R 14175985 intron cg + chr2R 14176146 intron cg + chr2R 14176308 intron cg + chr2R_4_14175001 chr2R_14175001 RAL-818 508 chr2R 14277577 14277611 chr2R 14277659 14277693 10 82 2.5 0.5 1.5 4.0 116 chr2R 14277577 5` UTR Ih + chr2R 14277635 5` UTR Ih + chr2R 14277693 5` UTR Ih + chr2R_10_14275001 chr2R_14275001 RAL-818 509 chr2R 14389078 14389099 chr2R 14389177 14389186 4 94 3.0 7.0 5.0 0.7 108 chr2R 14389078 intergenic not near genes chr2R 14389132 intergenic not near genes chr2R 14389186 intergenic not near genes chr2R_4_14385001 chr2R_14385001 RAL-818 510 chr2R 14393876 14393890 chr2R 14393956 14393974 7 84 5.0 3.5 4.2 1.3 98 chr2R 14393876 intergenic not near genes chr2R 14393925 intergenic not near genes chr2R 14393974 intergenic not near genes chr2R_7_14390001 chr2R_14390001 RAL-818 511 chr2R 14467306 14467323 chr2R 14476458 14476475 roo 6 9152 1.5 11.5 6.5 0.8 9169 chr2R 14467306 intergenic not near genes chr2R 14471890 intergenic not near genes chr2R 14476475 5` UTR CR44462 + chr2R_6_14470001 chr2R_14470001 RAL-818 512 chr2R 14511579 14511587 chr2R 14511683 14511691 4 104 2.0 1.5 1.8 1.4 112 chr2R 14511579 3` UTR Asx + chr2R 14511635 3` UTR Asx + chr2R 14511691 3` UTR Asx + chr2R_4_14510001 chr2R_14510001 RAL-818 513 chr2R 14530363 14530369 chr2R 14530452 14530458 4 89 6.0 2.5 4.2 0.8 95 chr2R 14530363 intron ttv + chr2R 14530410 intron ttv + chr2R 14530458 intron ttv + chr2R_4_14530001 chr2R_14530001 RAL-818 514 chr2R 14565559 14565591 chr2R 14565636 14565668 5 77 2.0 1.0 1.5 2.0 109 chr2R 14565559 intron ttv + chr2R 14565614 intron ttv + chr2R 14565668 intron ttv + chr2R_5_14565001 chr2R_14565001 RAL-818 515 chr2R 14728222 14728237 chr2R 14728304 14728319 5 83 2.5 1.5 2.0 1.7 97 chr2R 14728222 intergenic not near genes chr2R 14728270 intergenic not near genes chr2R 14728319 intergenic not near genes chr2R_5_14725001 chr2R_14725001 RAL-818 516 chr2R 14729958 14729987 chr2R 14730042 14730071 8 84 2.0 3.0 2.5 2.3 113 chr2R 14729958 intergenic not near genes chr2R 14730014 intergenic not near genes chr2R 14730071 intergenic not near genes chr2R_8_14730001 chr2R_14730001 RAL-818 517 chr2R 14850058 14850089 chr2R 14850162 14850194 20 105 26.0 22.5 24.2 0.8 136 chr2R 14850058 exon SMC2 - chr2R 14850126 intron SMC2 - chr2R 14850194 exon SMC2 - chr2R_20_14850001 chr2R_14850001 RAL-818 518 chr2R 14855055 14855065 chr2R 14855130 14855157 8 88 2.5 1.0 1.8 2.9 102 chr2R 14855055 intergenic Ciao1 -,HPS1 + chr2R 14855106 intergenic Ciao1 -,HPS1 + chr2R 14855157 intergenic Ciao1 -,HPS1 + chr2R_8_14855001 chr2R_14855001 RAL-818 519 chr2R 14911701 14911728 chr2R 14911824 14911851 9 123 1.5 0.5 1.0 4.5 150 chr2R 14911701 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_9_14910001 chr2R_14910001 RAL-818 520 chr2R 14922141 14922223 chr2R 14922217 14922361 7 120 0.0 0.0 0.0 7.0 220 chr2R 14922141 intron CG10249 - chr2R 14922251 intron CG10249 - chr2R 14922361 intron CG10249 - chr2R_7_14920001 chr2R_14920001 RAL-818 521 chr2R 15015454 15015486 chr2R 15022878 15022910 mdg1 10 7424 5.0 2.5 3.8 2.1 7456 chr2R 15015454 intron hbs + chr2R 15019182 intron hbs + chr2R 15022910 intron hbs + chr2R_10_15015001 chr2R_15015001 RAL-818 522 chr2R 15074804 15074821 chr2R 15075065 15075082 7 260 2.0 3.5 2.8 1.8 278 chr2R 15074804 intergenic not near genes chr2R 15074943 intergenic not near genes chr2R 15075082 intergenic not near genes chr2R_7_15070001 chr2R_15070001 RAL-818 523 chr2R 15084980 15085006 chr2R 15092029 15092055 297 8 7049 3.0 2.5 2.8 2.1 7075 chr2R 15084980 intergenic not near genes chr2R 15088518 intergenic not near genes chr2R 15092055 5` UTR CR44457 + chr2R_8_15085001 chr2R_15085001 RAL-818 524 chr2R 15119324 15119348 chr2R 15127804 15127804 Tirant 4 8474 3.0 4.5 3.8 0.8 8480 chr2R 15119324 intron chn + chr2R 15123564 intron chn + chr2R 15127804 intron chn + chr2R_4_15120001 chr2R_15120001 RAL-818 525 chr2R 15133486 15133508 chr2R 15133565 15133587 4 79 5.0 3.0 4.0 0.8 101 chr2R 15133486 intron chn + chr2R 15133536 intron chn + chr2R 15133587 intron chn + chr2R_4_15130001 chr2R_15130001 RAL-818 526 chr2R 15137970 15138003 chr2R 15138049 15138085 6 80 3.5 0.0 1.8 2.1 115 chr2R 15137970 intron chn + chr2R 15138028 intron chn + chr2R 15138085 intron chn + chr2R_6_15135001 chr2R_15135001 RAL-818 527 chr2R 15330209 15330234 chr2R 15330343 15330368 5 134 2.0 1.0 1.5 2.0 159 chr2R 15330209 intergenic CR44371 - chr2R 15330288 intergenic CR44371 - chr2R 15330368 intergenic CR44371 - chr2R_5_15330001 chr2R_15330001 RAL-818 528 chr2R 15410239 15410268 chr2R 15410322 15410351 8 83 4.0 5.0 4.5 1.5 112 chr2R 15410239 5` UTR CG43729 + chr2R 15410295 5` UTR CG43729 + chr2R 15410351 5` UTR CG43729 + chr2R_8_15410001 chr2R_15410001 RAL-818 529 chr2R 15410789 15410800 chr2R 15410981 15410991 4 190 1.5 6.5 4.0 0.8 202 chr2R 15410789 intron CG43729 + chr2R 15410890 intron CG43729 + chr2R 15410991 intron CG43729 + chr2R_4_15410001 chr2R_15410001 RAL-818 530 chr2R 15445217 15445241 chr2R 15445343 15445367 4 126 2.0 2.5 2.2 1.2 150 chr2R 15445217 intron CG43729 + chr2R 15445292 intron CG43729 + chr2R 15445367 intron CG43729 + chr2R_4_15445001 chr2R_15445001 RAL-818 531 chr2R 15450986 15451015 chr2R 15451081 15451110 9 94 0.5 4.5 2.5 2.6 124 chr2R 15450986 intron CG43729 + chr2R 15451048 intron CG43729 + chr2R 15451110 intron CG43729 + chr2R_9_15450001 chr2R_15450001 RAL-818 532 chr2R 15534677 15534696 chr2R 15534756 15534775 4 79 3.0 2.0 2.5 1.1 98 chr2R 15534677 intron CG30471 + chr2R 15534726 intron CG30471 + chr2R 15534775 intron CG30471 + chr2R_4_15530001 chr2R_15530001 RAL-818 533 chr2R 15685364 15685396 chr2R 15685467 15685499 4 103 1.5 1.0 1.2 1.8 135 chr2R 15685364 intron,exon Ranbp11 +,CG30082 - chr2R 15685432 intron,intron Ranbp11 +,CG30082 - chr2R 15685499 intron,intron Ranbp11 +,CG30082 - chr2R_4_15685001 chr2R_15685001 RAL-818 534 chr2R 15801265 15801293 chr2R 15801350 15801378 11 84 2.5 1.0 1.8 3.9 113 chr2R 15801265 intron,intron Zasp52 -,tun + chr2R 15801322 intron,intron Zasp52 -,tun + chr2R 15801378 intron,intron Zasp52 -,tun + chr2R_11_15800001 chr2R_15800001 RAL-818 535 chr2R 15898878 15898897 chr2R 15898976 15898994 9 97 7.0 3.0 5.0 1.5 116 chr2R 15898878 intron sli - chr2R 15898936 intron sli - chr2R 15898994 intron sli - chr2R_9_15895001 chr2R_15895001 RAL-818 536 chr2R 16131230 16131256 chr2R 16131324 16131350 6 94 3.0 3.5 3.2 1.4 120 chr2R 16131230 intron spin + chr2R 16131290 intron spin + chr2R 16131350 intron spin + chr2R_6_16130001 chr2R_16130001 RAL-818 537 chr2R 16243595 16243621 chr2R 16243706 16243732 6 111 1.5 1.0 1.2 2.7 137 chr2R 16243595 3` UTR CngA - chr2R 16243664 3` UTR CngA - chr2R 16243732 3` UTR CngA - chr2R_6_16240001 chr2R_16240001 RAL-818 538 chr2R 16480752 16480779 chr2R 16480828 16480853 8 75 3.5 3.5 3.5 1.8 101 chr2R 16480752 intergenic not near genes chr2R 16480802 intergenic not near genes chr2R 16480853 intergenic not near genes chr2R_8_16480001 chr2R_16480001 RAL-818 539 chr2R 16518760 16518776 chr2R 16518906 16518922 4 146 0.0 4.5 2.2 1.2 162 chr2R 16518760 intron Sema-2a + chr2R 16518841 intron Sema-2a + chr2R 16518922 intron Sema-2a + chr2R_4_16515001 chr2R_16515001 RAL-818 540 chr2R 16547020 16547027 chr2R 16547100 16547107 4 78 0.0 0.0 0.0 4.0 87 chr2R 16547020 intergenic not near genes chr2R 16547064 intergenic not near genes chr2R 16547107 intergenic not near genes chr2R_4_16545001 chr2R_16545001 RAL-818 541 chr2R 16601522 16601545 chr2R 16601631 16601656 8 111 6.0 1.0 3.5 1.8 134 chr2R 16601522 intron CG8303 - chr2R 16601589 intron CG8303 - chr2R 16601656 intron CG8303 - chr2R_8_16600001 chr2R_16600001 RAL-818 542 chr2R 16689153 16689175 chr2R 16689482 16689504 7 327 4.5 2.5 3.5 1.6 351 chr2R 16689153 intron CG30463 - chr2R 16689328 intron CG30463 - chr2R 16689504 intron CG30463 - chr2R_7_16685001 chr2R_16685001 RAL-818 543 chr2R 16740889 16740916 chr2R 16740981 16741009 7 93 1.0 2.5 1.8 2.5 120 chr2R 16740889 intergenic not near genes chr2R 16740949 intergenic not near genes chr2R 16741009 intergenic not near genes chr2R_7_16740001 chr2R_16740001 RAL-818 544 chr2R 16775650 16775668 chr2R 16775914 16775932 8 264 1.0 2.5 1.8 2.9 282 chr2R 16775650 3` UTR Arp53D + chr2R 16775791 intergenic Arp53D + chr2R 16775932 intergenic Arp53D + chr2R_8_16775001 chr2R_16775001 RAL-818 545 chr2R 16972442 16972450 chr2R 16972539 16972547 4 96 2.0 2.0 2.0 1.3 105 chr2R 16972442 intergenic not near genes chr2R 16972494 intergenic not near genes chr2R 16972547 intergenic not near genes chr2R_4_16970001 chr2R_16970001 RAL-818 546 chr2R 17147255 17147264 chr2R 17152286 17152295 jockey 4 5031 5.5 7.0 6.2 0.6 5040 chr2R 17147255 intergenic not near genes chr2R 17149775 intergenic not near genes chr2R 17152295 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-818 547 chr2R 17236506 17236539 chr2R 17241710 17241743 copia 12 5202 0.5 3.5 2.0 4.0 5237 chr2R 17236506 intron mbl + chr2R 17239124 intron mbl + chr2R 17241743 intron mbl + chr2R_12_17235001 chr2R_17235001 RAL-818 548 chr2R 17299757 17299777 chr2R 17299960 17299982 4 200 2.0 2.0 2.0 1.3 225 chr2R 17299757 intron mbl + chr2R 17299870 intron mbl + chr2R 17299982 intron mbl + chr2R_4_17295001 chr2R_17295001 RAL-818 549 chr2R 17389268 17389304 chr2R 17389359 17389394 8 87 1.5 2.0 1.8 2.9 126 chr2R 17389268 intergenic CR44344 - chr2R 17389331 intergenic CR44344 - chr2R 17389394 intergenic CR44344 - chr2R_8_17385001 chr2R_17385001 RAL-818 550 chr2R 17470324 17470347 chr2R 17470404 17470427 4 80 1.5 1.5 1.5 1.6 103 chr2R 17470324 intron qkr54B + chr2R 17470376 intron qkr54B + chr2R 17470427 intron qkr54B + chr2R_4_17470001 chr2R_17470001 RAL-818 551 chr2R 17556443 17556461 chr2R 17556527 17556546 8 85 1.0 4.5 2.8 2.1 103 chr2R 17556443 intergenic MESR4 + chr2R 17556494 intergenic MESR4 + chr2R 17556546 intergenic MESR4 +,Klp54D + chr2R_8_17555001 chr2R_17555001 RAL-818 552 chr2R 17561600 17561617 chr2R 17561679 17561696 8 79 3.0 4.0 3.5 1.8 96 chr2R 17561600 exon Klp54D + chr2R 17561648 intron Klp54D + chr2R 17561696 intron Klp54D + chr2R_8_17560001 chr2R_17560001 RAL-818 553 chr2R 17627765 17627785 chr2R 17628081 17628112 14 326 3.0 2.5 2.8 3.7 347 chr2R 17627765 intron CG10936 - chr2R 17627938 intron CG10936 - chr2R 17628112 intron CG10936 - chr2R_14_17625001 chr2R_17625001 RAL-818 554 chr2R 17784049 17784057 chr2R 17784290 17784296 pogo 5 240 5.0 6.0 5.5 0.8 247 chr2R 17784049 intergenic mir-31a - chr2R 17784172 intergenic mir-31a - chr2R 17784296 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-818 555 chr2R 17886629 17886657 chr2R 17886711 17886736 4 80 1.5 1.5 1.5 1.6 107 chr2R 17886629 intron Elk + chr2R 17886682 intron Elk + chr2R 17886736 intron Elk + chr2R_4_17885001 chr2R_17885001 RAL-818 556 chr2R 17934132 17934156 chr2R 17934236 17934257 8 104 3.5 4.5 4.0 1.6 125 chr2R 17934132 intergenic not near genes chr2R 17934194 intergenic not near genes chr2R 17934257 intergenic not near genes chr2R_8_17930001 chr2R_17930001 RAL-818 557 chr2R 18124345 18124370 chr2R 18124422 18124447 5 76 0.5 0.5 0.5 3.3 102 chr2R 18124345 intron stau - chr2R 18124396 intron stau - chr2R 18124447 intron stau - chr2R_5_18120001 chr2R_18120001 RAL-818 558 chr2R 18197897 18197908 chr2R 18197994 18198005 4 97 3.0 1.0 2.0 1.3 108 chr2R 18197897 intergenic not near genes chr2R 18197951 intergenic not near genes chr2R 18198005 intergenic not near genes chr2R_4_18195001 chr2R_18195001 RAL-818 559 chr2R 18308284 18308318 chr2R 18308389 18308424 9 106 4.0 3.5 3.8 1.9 140 chr2R 18308284 intron sbb - chr2R 18308354 intron sbb - chr2R 18308424 intron sbb - chr2R_9_18305001 chr2R_18305001 RAL-818 560 chr2R 18358388 18358413 chr2R 18372599 18372625 roo 11 14212 4.5 5.0 4.8 1.9 14237 chr2R 18358388 intergenic not near genes chr2R 18365506 intergenic not near genes chr2R 18372625 intergenic not near genes chr2R_11_18365001 chr2R_18365001 RAL-818 561 chr2R 18408287 18408312 chr2R 18408406 18408424 13 120 3.5 2.0 2.8 3.4 137 chr2R 18408287 exon GstE8 + chr2R 18408356 exon GstE8 + chr2R 18408424 exon GstE8 + chr2R_13_18405001 chr2R_18405001 RAL-818 562 chr2R 18575815 18575826 chr2R 18581984 18582014 3S18 5 6184 2.5 3.0 2.8 1.3 6199 chr2R 18575815 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582014 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-818 563 chr2R 18590865 18590898 chr2R 18600017 18600050 roo 7 9152 4.5 3.5 4.0 1.4 9185 chr2R 18590865 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600050 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-818 564 chr2R 18601131 18601164 chr2R 18601208 18601241 12 75 4.0 3.0 3.5 2.7 110 chr2R 18601131 intron GEFmeso - chr2R 18601186 intron GEFmeso - chr2R 18601241 intron GEFmeso - chr2R_12_18600001 chr2R_18600001 RAL-818 565 chr2R 18686906 18686939 chr2R 18687172 18687205 7 266 0.0 2.0 1.0 3.5 299 chr2R 18686906 intergenic CG44433 -,CG42855 + chr2R 18687056 intergenic CG44433 -,CG42855 + chr2R 18687205 intergenic CG42855 +,CG44433 - chr2R_7_18685001 chr2R_18685001 RAL-818 566 chr2R 18819056 18819068 chr2R 18819133 18819145 5 77 0.5 1.0 0.8 2.8 89 chr2R 18819056 intergenic Phb2 + chr2R 18819100 intergenic Phb2 + chr2R 18819145 intergenic Phb2 + chr2R_5_18815001 chr2R_18815001 RAL-818 567 chr2R 18926508 18926529 chr2R 18926595 18926616 8 87 4.5 0.0 2.2 2.5 108 chr2R 18926508 intron sano + chr2R 18926562 intron sano + chr2R 18926616 intron sano + chr2R_8_18925001 chr2R_18925001 RAL-818 568 chr2R 18930451 18930484 chr2R 18930544 18930577 4 93 1.0 1.5 1.2 1.8 126 chr2R 18930451 intron sano + chr2R 18930514 intron sano + chr2R 18930577 intron sano + chr2R_4_18930001 chr2R_18930001 RAL-818 569 chr2R 18964920 18964944 chr2R 18964996 18965020 7 76 2.0 0.5 1.2 3.2 100 chr2R 18964920 intergenic not near genes chr2R 18964970 intergenic not near genes chr2R 18965020 intergenic not near genes chr2R_7_18960001 chr2R_18960001 RAL-818 570 chr2R 18992017 18992050 chr2R 18992158 18992191 8 140 1.0 2.0 1.5 3.2 174 chr2R 18992017 intron tn + chr2R 18992104 intron tn + chr2R 18992191 intron tn + chr2R_8_18990001 chr2R_18990001 RAL-818 571 chr2R 19012944 19012970 chr2R 19013038 19013064 6 94 1.0 5.0 3.0 1.5 120 chr2R 19012944 intergenic not near genes chr2R 19013004 intergenic not near genes chr2R 19013064 intergenic not near genes chr2R_6_19010001 chr2R_19010001 RAL-818 572 chr2R 19096983 19097016 chr2R 19097063 19097096 11 80 1.5 1.0 1.2 5.0 113 chr2R 19096983 intron 5-HT1A + chr2R 19097040 intron 5-HT1A + chr2R 19097096 intron 5-HT1A + chr2R_11_19095001 chr2R_19095001 RAL-818 573 chr2R 19185646 19185671 chr2R 19185851 19185864 8 204 1.5 1.5 1.5 3.2 218 chr2R 19185646 intron hppy + chr2R 19185755 intron hppy + chr2R 19185864 intron hppy + chr2R_8_19185001 chr2R_19185001 RAL-818 574 chr2R 19300962 19300993 chr2R 19301045 19301074 8 83 4.0 3.5 3.8 1.7 112 chr2R 19300962 intron Tab2 + chr2R 19301018 intron Tab2 + chr2R 19301074 intron Tab2 + chr2R_8_19300001 chr2R_19300001 RAL-818 575 chr2R 19380073 19380101 chr2R 19380282 19380310 5 209 3.5 2.0 2.8 1.3 237 chr2R 19380073 3` UTR CG10062 + chr2R 19380192 intergenic CG10062 +,CG10073 + chr2R 19380310 intergenic CG10062 +,CG10073 + chr2R_5_19380001 chr2R_19380001 RAL-818 576 chr2R 19554483 19554516 chr2R 19555724 19555758 16 1240 2.5 3.5 3.0 4.0 1275 chr2R 19554483 intron sm - chr2R 19555120 intron sm - chr2R 19555758 intron sm - chr2R_16_19555001 chr2R_19555001 RAL-818 577 chr2R 19637520 19637547 chr2R 19637695 19637722 8 174 2.0 0.5 1.2 3.6 202 chr2R 19637520 5` UTR mir-4983 + chr2R 19637621 intron CG43277 + chr2R 19637722 exon CG43277 + chr2R_8_19635001 chr2R_19635001 RAL-818 578 chr2R 19776594 19776629 chr2R 19779917 19779952 jockey 11 3322 3.0 4.5 3.8 2.3 3358 chr2R 19776594 intergenic not near genes chr2R 19778273 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_11_19775001 chr2R_19775001 RAL-818 579 chr2R 19805477 19805485 chr2R 19805557 19805557 4 78 3.0 1.5 2.2 1.2 80 chr2R 19805477 intergenic not near genes chr2R 19805517 intergenic not near genes chr2R 19805557 intergenic not near genes chr2R_4_19805001 chr2R_19805001 RAL-818 580 chr2R 19823977 19823987 chr2R 19824320 19824330 4 340 3.0 4.5 3.8 0.8 353 chr2R 19823977 intergenic not near genes chr2R 19824154 intergenic not near genes chr2R 19824330 intergenic not near genes chr2R_4_19820001 chr2R_19820001 RAL-818 581 chr2R 19914844 19914863 chr2R 19922256 19922275 mdg1 4 7412 2.0 0.5 1.2 1.8 7431 chr2R 19914844 intergenic not near genes chr2R 19918560 intergenic not near genes chr2R 19922275 intergenic not near genes chr2R_4_19915001 chr2R_19915001 RAL-818 582 chr2R 19957429 19957460 chr2R 19962631 19962662 copia 6 5201 3.0 2.0 2.5 1.7 5233 chr2R 19957429 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962662 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-818 583 chr2R 19981680 19981692 chr2R 19981737 19981737 5 63 2.5 2.5 2.5 1.4 57 chr2R 19981680 intron CG8654 + chr2R 19981708 intron CG8654 + chr2R 19981737 intron CG8654 + chr2R_5_19980001 chr2R_19980001 RAL-818 584 chr2R 20015821 20015825 chr2R 20015953 20015956 4 132 2.5 7.5 5.0 0.7 135 chr2R 20015821 intergenic not near genes chr2R 20015888 intergenic not near genes chr2R 20015956 intergenic not near genes chr2R_4_20015001 chr2R_20015001 RAL-818 585 chr2R 20162682 20162708 chr2R 20162799 20162825 11 117 2.5 3.5 3.0 2.8 143 chr2R 20162682 intergenic not near genes chr2R 20162754 intergenic not near genes chr2R 20162825 intergenic not near genes chr2R_11_20160001 chr2R_20160001 RAL-818 586 chr2R 20326763 20326794 chr2R 20326840 20326871 13 75 2.5 1.0 1.8 4.6 108 chr2R 20326763 5` UTR MED8 - chr2R 20326817 intergenic MED8 -,CG8929 + chr2R 20326871 intergenic MED8 -,CG8929 + chr2R_13_20325001 chr2R_20325001 RAL-818 587 chr2R 20519779 20519794 chr2R 20519917 20519932 8 136 6.5 6.0 6.2 1.1 153 chr2R 20519779 intergenic not near genes chr2R 20519856 intergenic not near genes chr2R 20519932 intergenic not near genes chr2R_8_20515001 chr2R_20515001 RAL-818 588 chr2R 20523048 20523068 chr2R 20523149 20523178 12 106 4.5 2.5 3.5 2.7 130 chr2R 20523048 intergenic not near genes chr2R 20523113 intergenic not near genes chr2R 20523178 intergenic not near genes chr2R_12_20520001 chr2R_20520001 RAL-818 589 chr2R 20702670 20702700 chr2R 20702746 20702776 9 76 1.0 3.5 2.2 2.8 106 chr2R 20702670 intron dpr + chr2R 20702723 intron dpr + chr2R 20702776 intron dpr + chr2R_9_20700001 chr2R_20700001 RAL-818 590 chr2R 20739441 20739477 chr2R 20744208 20744245 F-element 8 4768 3.5 1.0 2.2 2.5 4804 chr2R 20739441 intron dpr + chr2R 20741843 intron dpr + chr2R 20744245 intron dpr + chr2R_8_20740001 chr2R_20740001 RAL-818 591 chr2R 20838058 20838082 chr2R 20838139 20838163 4 81 0.0 2.0 1.0 2.0 105 chr2R 20838058 intron CR44667 + chr2R 20838110 intron CR44667 + chr2R 20838163 intron CR44667 + chr2R_4_20835001 chr2R_20835001 RAL-818 592 chr2R 20863122 20863134 chr2R 20863208 20863220 6 86 4.5 2.0 3.2 1.4 98 chr2R 20863122 intergenic not near genes chr2R 20863171 intergenic not near genes chr2R 20863220 intergenic not near genes chr2R_6_20860001 chr2R_20860001 RAL-818 593 chr2R 20962906 20962925 chr2R 20963004 20963023 7 98 3.5 3.5 3.5 1.6 117 chr2R 20962906 intergenic not near genes chr2R 20962964 intergenic not near genes chr2R 20963023 intergenic not near genes chr2R_7_20960001 chr2R_20960001 RAL-818 594 chr2R 21151119 21151146 chr2R 21153752 21153779 opus 6 2633 2.5 5.5 4.0 1.2 2660 chr2R 21151119 intron CG30389 - chr2R 21152449 intron CG30389 - chr2R 21153779 intron CG30389 - chr2R_6_21150001 chr2R_21150001 RAL-818 595 chr2R 21188226 21188229 chr2R 21188307 21188310 4 81 5.0 4.5 4.8 0.7 84 chr2R 21188226 exon tud + chr2R 21188268 intron tud + chr2R 21188310 intron tud + chr2R_4_21185001 chr2R_21185001 RAL-818 596 chr2R 21322941 21322971 chr2R 21323024 21323047 10 80 0.5 7.5 4.0 2.0 106 chr2R 21322941 5` UTR CG30394 - chr2R 21322994 5` UTR CG30394 - chr2R 21323047 5` UTR CG30394 - chr2R_10_21320001 chr2R_21320001 RAL-818 597 chr2R 21410092 21410112 chr2R 21410162 21410190 4 76 2.0 3.0 2.5 1.1 98 chr2R 21410092 intron Sdc - chr2R 21410141 intron Sdc - chr2R 21410190 intron Sdc - chr2R_4_21410001 chr2R_21410001 RAL-818 598 chr2R 21421339 21421353 chr2R 21421418 21421432 4 79 3.0 4.0 3.5 0.9 93 chr2R 21421339 intron Sdc - chr2R 21421386 intron Sdc - chr2R 21421432 intron Sdc - chr2R_4_21420001 chr2R_21420001 RAL-818 599 chr2R 21472330 21472337 chr2R 21472404 21472415 5 76 2.0 5.0 3.5 1.1 85 chr2R 21472330 intron Sdc - chr2R 21472372 intron Sdc - chr2R 21472415 intron Sdc - chr2R_5_21470001 chr2R_21470001 RAL-818 600 chr2R 21597762 21597786 chr2R 21597846 21597869 6 83 4.5 3.0 3.8 1.2 107 chr2R 21597762 intergenic not near genes chr2R 21597816 intergenic not near genes chr2R 21597869 intergenic not near genes chr2R_6_21595001 chr2R_21595001 RAL-818 601 chr2R 21660879 21660900 chr2R 21660972 21660989 8 92 4.0 2.5 3.2 1.9 110 chr2R 21660879 intergenic pirk - chr2R 21660934 intergenic pirk - chr2R 21660989 3` UTR pirk - chr2R_8_21660001 chr2R_21660001 RAL-818 602 chr2R 21753088 21753116 chr2R 21753573 21753600 roo 10 485 2.5 1.5 2.0 3.3 512 chr2R 21753088 intergenic not near genes chr2R 21753344 intergenic not near genes chr2R 21753600 intergenic not near genes chr2R_10_21750001 chr2R_21750001 RAL-818 603 chr2R 21809524 21809557 chr2R 21817764 21817797 roo 5 8234 1.5 1.5 1.5 2.0 8273 chr2R 21809524 intergenic not near genes chr2R 21813660 intergenic not near genes chr2R 21817797 intergenic not near genes chr2R_5_21810001 chr2R_21810001 RAL-818 604 chr2R 21857350 21857369 chr2R 21857441 21857460 7 91 2.5 4.0 3.2 1.7 110 chr2R 21857350 intergenic not near genes chr2R 21857405 intergenic not near genes chr2R 21857460 intergenic not near genes chr2R_7_21855001 chr2R_21855001 RAL-818 605 chr2R 21932249 21932281 chr2R 21932327 21932359 5 75 3.5 3.0 3.2 1.2 110 chr2R 21932249 intron Fili + chr2R 21932304 intron Fili + chr2R 21932359 intron Fili + chr2R_5_21930001 chr2R_21930001 RAL-818 606 chr2R 21985544 21985563 chr2R 21985624 21985644 6 81 4.0 3.5 3.8 1.2 100 chr2R 21985544 intergenic CG30401 - chr2R 21985594 intergenic CG30401 - chr2R 21985644 3` UTR CG30401 - chr2R_6_21985001 chr2R_21985001 RAL-818 607 chr2R 22072684 22072713 chr2R 22072766 22072798 9 85 1.5 1.5 1.5 3.6 114 chr2R 22072684 intron CG11474 - chr2R 22072741 intron CG11474 - chr2R 22072798 exon CG11474 - chr2R_9_22070001 chr2R_22070001 RAL-818 608 chr2R 22148063 22148095 chr2R 22148158 22148194 8 97 3.0 1.0 2.0 2.7 131 chr2R 22148063 intron a + chr2R 22148128 intron a + chr2R 22148194 intron a + chr2R_8_22145001 chr2R_22145001 RAL-818 609 chr2R 22258498 22258503 chr2R 22258628 22258634 4 131 5.5 0.0 2.8 1.1 136 chr2R 22258498 intron dve + chr2R 22258566 intron dve + chr2R 22258634 intron dve + chr2R_4_22255001 chr2R_22255001 RAL-818 610 chr2R 22349693 22349725 chr2R 22351475 22351507 jockey 11 1783 3.5 3.0 3.2 2.6 1814 chr2R 22349693 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351507 intron Liprin-gamma - chr2R_11_22350001 chr2R_22350001 RAL-818 611 chr2R 22461334 22461367 chr2R 22461421 22461453 8 83 2.5 2.5 2.5 2.3 119 chr2R 22461334 intron CG10384 + chr2R 22461394 intron CG10384 + chr2R 22461453 intron CG10384 + chr2R_8_22460001 chr2R_22460001 RAL-818 612 chr2R 22503882 22503897 chr2R 22504060 22504060 4 179 1.0 0.0 0.5 2.7 178 chr2R 22503882 intron px - chr2R 22503971 intron px - chr2R 22504060 intron px - chr2R_4_22500001 chr2R_22500001 RAL-818 613 chr2R 22574174 22574188 chr2R 22574237 22574268 9 78 1.0 4.0 2.5 2.6 94 chr2R 22574174 intron dnr1 - chr2R 22574221 intron dnr1 - chr2R 22574268 intron dnr1 - chr2R_9_22570001 chr2R_22570001 RAL-818 614 chr2R 22789814 22789842 chr2R 22790100 22790128 10 286 3.0 2.5 2.8 2.6 314 chr2R 22789814 intron CG42260 - chr2R 22789971 intron CG42260 - chr2R 22790128 intron CG42260 - chr2R_10_22785001 chr2R_22785001 RAL-818 615 chr2R 22907405 22907436 chr2R 22907497 22907501 4 83 3.0 5.5 4.2 0.8 96 chr2R 22907405 intron nahoda + chr2R 22907453 intron nahoda + chr2R 22907501 intron nahoda + chr2R_4_22905001 chr2R_22905001 RAL-818 616 chr2R 22991632 22991646 chr2R 22991724 22991738 4 92 4.0 1.0 2.5 1.1 106 chr2R 22991632 intron twi + chr2R 22991685 intron twi + chr2R 22991738 intron twi + chr2R_4_22990001 chr2R_22990001 RAL-818 617 chr2R 23045339 23045359 chr2R 23045553 23045573 6 214 2.5 0.0 1.2 2.7 234 chr2R 23045339 intron twi + chr2R 23045456 intron twi + chr2R 23045573 intron twi + chr2R_6_23045001 chr2R_23045001 RAL-818 618 chr2R 23052649 23052689 chr2R 23052725 23052765 8 76 1.0 2.5 1.8 2.9 116 chr2R 23052649 intergenic not near genes chr2R 23052707 intergenic not near genes chr2R 23052765 intergenic not near genes chr2R_8_23050001 chr2R_23050001 RAL-818 619 chr2R 23219013 23219024 chr2R 23219251 23219261 5 238 2.5 0.0 1.2 2.3 248 chr2R 23219013 intergenic not near genes chr2R 23219137 intergenic not near genes chr2R 23219261 intergenic not near genes chr2R_5_23215001 chr2R_23215001 RAL-818 620 chr2R 23234628 23234643 chr2R 23234733 23234748 4 105 2.5 3.0 2.8 1.1 120 chr2R 23234628 intergenic not near genes chr2R 23234688 intergenic not near genes chr2R 23234748 intergenic not near genes chr2R_4_23230001 chr2R_23230001 RAL-818 621 chr2R 23265908 23265930 chr2R 23266356 23266368 6 446 3.0 2.0 2.5 1.7 460 chr2R 23265908 intergenic CG12782 - chr2R 23266138 intergenic not near genes chr2R 23266368 intergenic not near genes chr2R_6_23265001 chr2R_23265001 RAL-818 622 chr2R 23330529 23330555 chr2R 23334163 23334167 4 3618 7.0 14.5 10.8 0.3 3638 chr2R 23330529 intergenic CG30413 - chr2R 23332348 intergenic not near genes chr2R 23334167 intergenic not near genes chr2R_4_23330001 chr2R_23330001 RAL-818 623 chr2R 23402610 23402640 chr2R 23407686 23407716 flea 7 5073 0.0 4.0 2.0 2.3 5106 chr2R 23402610 intergenic CG3520 - chr2R 23405163 intergenic not near genes chr2R 23407716 intergenic not near genes chr2R_7_23405001 chr2R_23405001 RAL-818 624 chr2R 23422643 23422678 chr2R 23422723 23422758 9 77 3.0 3.0 3.0 2.2 115 chr2R 23422643 intron CG9815 - chr2R 23422700 intron CG9815 - chr2R 23422758 intron CG9815 - chr2R_9_23420001 chr2R_23420001 RAL-818 625 chr2R 23607051 23607192 chr2R 23607132 23607285 6 83 2.5 3.0 2.8 1.6 234 chr2R 23607051 intron CG17664 - chr2R 23607168 intron CG17664 - chr2R 23607285 intron CG17664 - chr2R_6_23605001 chr2R_23605001 RAL-818 626 chr2R 23614930 23614962 chr2R 23615556 23615588 11 624 2.5 4.5 3.5 2.4 658 chr2R 23614930 intron CG17664 - chr2R 23615259 intron CG17664 - chr2R 23615588 intron CG17664 - chr2R_11_23615001 chr2R_23615001 RAL-818 627 chr2R 23663611 23663640 chr2R 23663702 23663727 5 90 4.0 1.5 2.8 1.3 116 chr2R 23663611 intron Pde8 + chr2R 23663669 intron Pde8 + chr2R 23663727 intron Pde8 + chr2R_5_23660001 chr2R_23660001 RAL-818 628 chr2R 23739185 23739215 chr2R 23739263 23739292 8 75 4.0 3.0 3.5 1.8 107 chr2R 23739185 intron egl - chr2R 23739238 intron egl - chr2R 23739292 intron egl - chr2R_8_23735001 chr2R_23735001 RAL-818 629 chr2R 23747058 23747093 chr2R 23747605 23747641 5 545 0.0 0.5 0.2 4.2 583 chr2R 23747058 intergenic egl - chr2R 23747350 intergenic CG13560 + chr2R 23747641 exon CG13560 + chr2R_5_23745001 chr2R_23745001 RAL-818 630 chr2R 23784482 23784506 chr2R 23784559 23784584 14 77 2.0 1.5 1.8 5.0 102 chr2R 23784482 intron CG9850 - chr2R 23784533 intron CG9850 - chr2R 23784584 intron CG9850 - chr2R_14_23780001 chr2R_23780001 RAL-818 631 chr2R 23865844 23865856 chr2R 23865926 23865938 4 82 5.0 1.0 3.0 1.0 94 chr2R 23865844 intron CG5569 + chr2R 23865891 intron CG5569 + chr2R 23865938 intron CG5569 + chr2R_4_23865001 chr2R_23865001 RAL-818 632 chr2R 23914298 23914332 chr2R 23921922 23921956 412 12 7623 1.5 3.0 2.2 3.8 7658 chr2R 23914298 exon kcc + chr2R 23918127 intron kcc + chr2R 23921956 intron kcc + chr2R_12_23915001 chr2R_23915001 RAL-818 633 chr2R 23986513 23986537 chr2R 23986593 23986617 10 80 2.0 2.5 2.2 3.1 104 chr2R 23986513 intron Phm - chr2R 23986565 intron Phm - chr2R 23986617 intron,5` UTR Phm -,CG30178 + chr2R_10_23985001 chr2R_23985001 RAL-818 634 chr2R 24031381 24031400 chr2R 24031465 24031484 6 84 5.0 2.5 3.8 1.2 103 chr2R 24031381 5` UTR CG30172 - chr2R 24031432 intergenic CG30172 -,Chi - chr2R 24031484 intergenic Chi -,CG30172 - chr2R_6_24030001 chr2R_24030001 RAL-818 635 chr2R 24147069 24147098 chr2R 24154645 24154676 412 4 7574 0.5 6.5 3.5 0.9 7607 chr2R 24147069 intron Dat + chr2R 24150872 intron Dat + chr2R 24154676 intron Dat + chr2R_4_24150001 chr2R_24150001 RAL-818 636 chr2R 24177242 24177269 chr2R 24184727 24184753 412 4 7485 1.0 2.0 1.5 1.6 7511 chr2R 24177242 3` UTR Nop60B + chr2R 24180998 intron Nop60B + chr2R 24184753 3` UTR Nop60B + chr2R_4_24180001 chr2R_24180001 RAL-818 637 chr2R 24278324 24278357 chr2R 24278406 24278435 16 80 0.0 4.5 2.2 5.0 111 chr2R 24278324 intron nvy + chr2R 24278380 intron nvy + chr2R 24278435 intron nvy + chr2R_16_24275001 chr2R_24275001 RAL-818 638 chr2R 24303888 24303918 chr2R 24303972 24304002 13 83 4.5 0.0 2.2 4.1 114 chr2R 24303888 intergenic not near genes chr2R 24303945 intergenic not near genes chr2R 24304002 intergenic not near genes chr2R_13_24300001 chr2R_24300001 RAL-818 639 chr2R 24353427 24353462 chr2R 24361789 24361824 roo 5 8360 1.0 4.0 2.5 1.4 8397 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357626 intron,intron bs +,CR44811 - chr2R 24361824 intron,intron bs +,CR44811 - chr2R_5_24355001 chr2R_24355001 RAL-818 640 chr2R 24383825 24383856 chr2R 24383906 24383936 9 81 2.5 3.0 2.8 2.4 111 chr2R 24383825 intron mAChR-A - chr2R 24383880 intron mAChR-A - chr2R 24383936 exon mAChR-A - chr2R_9_24380001 chr2R_24380001 RAL-818 641 chr2R 24437182 24437208 chr2R 24437271 24437297 13 87 2.5 4.5 3.5 2.9 115 chr2R 24437182 intergenic not near genes chr2R 24437240 intergenic not near genes chr2R 24437297 intergenic not near genes chr2R_13_24435001 chr2R_24435001 RAL-818 642 chr2R 24647596 24647617 chr2R 24655151 24655174 412 7 7555 6.0 2.5 4.2 1.3 7578 chr2R 24647596 intergenic not near genes chr2R 24651385 intergenic not near genes chr2R 24655174 intergenic not near genes chr2R_7_24650001 chr2R_24650001 RAL-818 643 chr2R 24727886 24727912 chr2R 24735393 24735413 mdg1 10 7505 1.5 3.0 2.2 3.1 7527 chr2R 24727886 intron Mid1 - chr2R 24731650 intron Mid1 - chr2R 24735413 intron Mid1 - chr2R_10_24730001 chr2R_24730001 RAL-818 644 chr2R 24859843 24859863 chr2R 24859929 24859947 6 86 1.0 1.5 1.2 2.7 104 chr2R 24859843 5` UTR CR44829 + chr2R 24859895 5` UTR CR44829 + chr2R 24859947 5` UTR CR44829 + chr2R_6_24855001 chr2R_24855001 RAL-818 645 chr2R 25004890 25004924 chr2R 25004968 25005002 17 76 2.5 2.0 2.2 5.3 112 chr2R 25004890 intron zip - chr2R 25004946 intron zip - chr2R 25005002 intron zip - chr2R_17_25000001 chr2R_25000001 RAL-818 646 chr2R 25014549 25014563 chr2R 25014625 25014639 4 75 5.5 5.5 5.5 0.6 90 chr2R 25014549 intron uzip + chr2R 25014594 intron uzip + chr2R 25014639 intron uzip + chr2R_4_25010001 chr2R_25010001 RAL-818 647 chr2R 25018341 25018375 chr2R 25018439 25018476 10 100 2.5 4.5 3.5 2.2 135 chr2R 25018341 intron uzip + chr2R 25018408 intron uzip + chr2R 25018476 intron uzip + chr2R_10_25015001 chr2R_25015001 RAL-818 648 chr2R 25022641 25022667 chr2R 25022725 25022751 5 84 0.5 1.5 1.0 2.5 110 chr2R 25022641 intron uzip + chr2R 25022696 intron uzip + chr2R 25022751 intron uzip + chr2R_5_25020001 chr2R_25020001 RAL-818 649 chr2R 25101283 25101308 chr2R 25101385 25101410 5 102 1.5 2.0 1.8 1.8 127 chr2R 25101283 intron lov - chr2R 25101346 intron lov - chr2R 25101410 intron lov - chr2R_5_25100001 chr2R_25100001 RAL-818 650 chr2R 25236028 25236042 chr2R 25236139 25236152 8 110 0.5 0.0 0.2 6.7 124 chr2R 25236028 intron CG9380 - chr2R 25236090 intron CG9380 - chr2R 25236152 intron CG9380 - chr2R_8_25235001 chr2R_25235001 RAL-818 651 chr2R 25253445 25253476 chr2R 25253519 25253552 6 76 0.5 2.5 1.5 2.4 107 chr2R 25253445 intron,intron CG9380 -,CG30428 + chr2R 25253498 intron,intron CG9380 -,CG30428 + chr2R 25253552 intron,intron CG9380 -,CG30428 + chr2R_6_25250001 chr2R_25250001 RAL-818 652 chr3L 110218 110241 chr3L 119385 119408 roo 5 9167 3.0 3.0 3.0 1.2 9190 chr3L 110218 intergenic not near genes chr3L 114813 intergenic not near genes chr3L 119408 intergenic not near genes chr3L_5_110001 chr3L_110001 RAL-818 653 chr3L 299355 299381 chr3L 299458 299487 11 106 3.0 2.5 2.8 2.9 132 chr3L 299355 intron RhoGEF3 + chr3L 299421 intron RhoGEF3 + chr3L 299487 intron RhoGEF3 + chr3L_11_295001 chr3L_295001 RAL-818 654 chr3L 349447 349468 chr3L 349524 349545 6 77 6.5 3.5 5.0 1.0 98 chr3L 349447 intron Ptpmeg + chr3L 349496 intron Ptpmeg + chr3L 349545 intron Ptpmeg + chr3L_6_345001 chr3L_345001 RAL-818 655 chr3L 380426 380451 chr3L 380781 380806 5 355 3.0 3.0 3.0 1.2 380 chr3L 380426 intron trh - chr3L 380616 intron trh - chr3L 380806 intron trh - chr3L_5_380001 chr3L_380001 RAL-818 656 chr3L 402695 402718 chr3L 409746 409771 297 9 7053 3.5 5.0 4.2 1.7 7076 chr3L 402695 intergenic not near genes chr3L 406233 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-818 657 chr3L 437134 437152 chr3L 437263 437278 4 128 6.0 5.0 5.5 0.6 144 chr3L 437134 intron klar - chr3L 437206 intron klar - chr3L 437278 intron klar - chr3L_4_435001 chr3L_435001 RAL-818 658 chr3L 438858 438872 chr3L 438938 438951 4 80 1.5 2.5 2.0 1.3 93 chr3L 438858 intron klar - chr3L 438904 intron klar - chr3L 438951 intron klar - chr3L_4_435001 chr3L_435001 RAL-818 659 chr3L 456226 456239 chr3L 456305 456318 6 79 1.0 5.0 3.0 1.5 92 chr3L 456226 intron klar - chr3L 456272 intron klar - chr3L 456318 intron klar - chr3L_6_455001 chr3L_455001 RAL-818 660 chr3L 459980 460003 chr3L 460055 460080 9 76 2.0 2.0 2.0 3.0 100 chr3L 459980 intron klar - chr3L 460030 intron klar - chr3L 460080 intron klar - chr3L_9_460001 chr3L_460001 RAL-818 661 chr3L 467742 467773 chr3L 467826 467859 12 85 1.0 4.5 2.8 3.2 117 chr3L 467742 intron klar - chr3L 467800 intron klar - chr3L 467859 intron klar - chr3L_12_465001 chr3L_465001 RAL-818 662 chr3L 523655 523667 chr3L 523781 523793 6 126 2.0 2.0 2.0 2.0 138 chr3L 523655 intron klar - chr3L 523724 intron klar - chr3L 523793 intron klar - chr3L_6_520001 chr3L_520001 RAL-818 663 chr3L 651398 651422 chr3L 651486 651510 11 88 4.5 2.0 3.2 2.6 112 chr3L 651398 intergenic Gale +,CG3402 - chr3L 651454 intergenic CG3402 -,Gale + chr3L 651510 intergenic CG3402 -,Gale + chr3L_11_650001 chr3L_650001 RAL-818 664 chr3L 705899 705930 chr3L 705995 706026 7 96 2.0 2.5 2.2 2.2 127 chr3L 705899 intergenic CG13895 -,CR44514 + chr3L 705962 3` UTR CG13895 - chr3L 706026 3` UTR CG13895 - chr3L_7_705001 chr3L_705001 RAL-818 665 chr3L 746494 746516 chr3L 746579 746601 13 85 4.0 4.5 4.2 2.5 107 chr3L 746494 intron hng3 - chr3L 746548 intron hng3 - chr3L 746601 intron hng3 - chr3L_13_745001 chr3L_745001 RAL-818 666 chr3L 858013 858031 chr3L 866478 866509 Tirant 5 8473 3.5 2.0 2.8 1.3 8496 chr3L 858013 intergenic not near genes chr3L 862261 intergenic not near genes chr3L 866509 5` UTR CG12502 + chr3L_5_860001 chr3L_860001 RAL-818 667 chr3L 875657 875688 chr3L 875744 875775 11 84 4.5 5.5 5.0 1.8 118 chr3L 875657 intron CG32479 + chr3L 875716 intron CG32479 + chr3L 875775 intron CG32479 + chr3L_11_875001 chr3L_875001 RAL-818 668 chr3L 905085 905094 chr3L 905169 905178 4 84 0.0 1.5 0.8 2.2 93 chr3L 905085 intergenic not near genes chr3L 905132 intergenic not near genes chr3L 905178 intergenic not near genes chr3L_4_905001 chr3L_905001 RAL-818 669 chr3L 925174 925209 chr3L 932600 932635 mdg1 20 7425 2.0 5.5 3.8 4.2 7461 chr3L 925174 intron Glut1 + chr3L 928904 intron Glut1 + chr3L 932635 intron Glut1 + chr3L_20_925001 chr3L_925001 RAL-818 670 chr3L 925102 925120 chr3L 932910 932924 mdg1 9 7805 16.5 15.5 16.0 0.5 7822 chr3L 925102 intron Glut1 + chr3L 929013 intron Glut1 + chr3L 932924 intron Glut1 + chr3L_9_925001 chr3L_925001 RAL-818 671 chr3L 933912 933942 chr3L 934015 934045 7 103 1.5 3.0 2.2 2.2 133 chr3L 933912 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934045 intron Glut1 + chr3L_7_930001 chr3L_930001 RAL-818 672 chr3L 939771 939802 chr3L 940892 940923 jockey 10 1120 1.0 3.5 2.2 3.1 1152 chr3L 939771 intron Glut1 + chr3L 940347 intron Glut1 + chr3L 940923 intron Glut1 + chr3L_10_940001 chr3L_940001 RAL-818 673 chr3L 1040549 1040581 chr3L 1040633 1040665 15 84 2.5 2.0 2.2 4.7 116 chr3L 1040549 intron bab1 - chr3L 1040607 intron bab1 - chr3L 1040665 intron bab1 - chr3L_15_1040001 chr3L_1040001 RAL-818 674 chr3L 1055734 1055765 chr3L 1055840 1055871 8 107 0.0 3.0 1.5 3.2 137 chr3L 1055734 intron bab1 - chr3L 1055802 intron bab1 - chr3L 1055871 intron bab1 - chr3L_8_1055001 chr3L_1055001 RAL-818 675 chr3L 1075494 1075502 chr3L 1075563 1075564 8 78 2.5 1.5 2.0 2.7 70 chr3L 1075494 intron bab1 - chr3L 1075529 intron bab1 - chr3L 1075564 intron bab1 - chr3L_8_1075001 chr3L_1075001 RAL-818 676 chr3L 1145242 1145250 chr3L 1145321 1145329 6 79 4.0 0.0 2.0 2.0 87 chr3L 1145242 intron bab2 - chr3L 1145286 intron bab2 - chr3L 1145329 intron bab2 - chr3L_6_1145001 chr3L_1145001 RAL-818 677 chr3L 1154130 1154163 chr3L 1163280 1163313 roo 10 9150 4.5 2.0 3.2 2.4 9183 chr3L 1154130 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163313 intron bab2 - chr3L_10_1155001 chr3L_1155001 RAL-818 678 chr3L 1219594 1219619 chr3L 1227327 1227352 412 10 7732 3.0 4.5 3.8 2.1 7758 chr3L 1219594 intron mwh + chr3L 1223473 intron mwh + chr3L 1227352 intron mwh + chr3L_10_1220001 chr3L_1220001 RAL-818 679 chr3L 1275093 1275124 chr3L 1275172 1275198 4 77 2.5 1.0 1.8 1.4 105 chr3L 1275093 intergenic not near genes chr3L 1275146 intergenic not near genes chr3L 1275198 intergenic not near genes chr3L_4_1275001 chr3L_1275001 RAL-818 680 chr3L 1310982 1311001 chr3L 1315842 1315875 12 4863 18.5 23.5 21.0 0.5 4893 chr3L 1310982 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315875 exon CG9153 + chr3L_12_1310001 chr3L_1310001 RAL-818 681 chr3L 1347156 1347189 chr3L 1347241 1347274 12 82 1.5 5.5 3.5 2.7 118 chr3L 1347156 intron Ptp61F - chr3L 1347215 intron Ptp61F - chr3L 1347274 intron Ptp61F - chr3L_12_1345001 chr3L_1345001 RAL-818 682 chr3L 1364051 1364066 chr3L 1364137 1364152 7 86 0.0 4.5 2.2 2.2 101 chr3L 1364051 intron Ptp61F - chr3L 1364102 intron Ptp61F - chr3L 1364152 intron Ptp61F - chr3L_7_1360001 chr3L_1360001 RAL-818 683 chr3L 1396740 1396758 chr3L 1396824 1396842 10 84 3.5 3.5 3.5 2.2 102 chr3L 1396740 intron Ptp61F - chr3L 1396791 intron Ptp61F - chr3L 1396842 intron Ptp61F - chr3L_10_1395001 chr3L_1395001 RAL-818 684 chr3L 1415783 1415806 chr3L 1415865 1415884 8 78 0.0 4.0 2.0 2.7 101 chr3L 1415783 intron Ptp61F - chr3L 1415834 intron Ptp61F - chr3L 1415884 intron Ptp61F - chr3L_8_1415001 chr3L_1415001 RAL-818 685 chr3L 1505996 1506030 chr3L 1513593 1513627 17.6 16 7597 6.5 4.5 5.5 2.5 7631 chr3L 1505996 intron,intron Psa +,cue - chr3L 1509812 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_16_1505001 chr3L_1505001 RAL-818 686 chr3L 1697156 1697168 chr3L 1697267 1697279 10 111 4.5 4.5 4.5 1.8 123 chr3L 1697156 intron CG7991 + chr3L 1697218 intron CG7991 + chr3L 1697279 intron CG7991 + chr3L_10_1695001 chr3L_1695001 RAL-818 687 chr3L 1848649 1848671 chr3L 1848727 1848730 7 75 2.0 3.0 2.5 2.0 81 chr3L 1848649 intergenic not near genes chr3L 1848690 intergenic not near genes chr3L 1848730 intergenic not near genes chr3L_7_1845001 chr3L_1845001 RAL-818 688 chr3L 1923007 1923041 chr3L 1923096 1923129 11 87 0.5 4.5 2.5 3.1 122 chr3L 1923007 intron Dbx + chr3L 1923068 intron Dbx + chr3L 1923129 intron Dbx + chr3L_11_1920001 chr3L_1920001 RAL-818 689 chr3L 1924962 1924972 chr3L 1925100 1925110 6 138 3.5 3.0 3.2 1.4 148 chr3L 1924962 exon Dbx + chr3L 1925036 intron Dbx + chr3L 1925110 intron Dbx + chr3L_6_1925001 chr3L_1925001 RAL-818 690 chr3L 1991119 1991136 chr3L 1991196 1991213 8 78 4.0 0.5 2.2 2.5 94 chr3L 1991119 intergenic not near genes chr3L 1991166 intergenic not near genes chr3L 1991213 intergenic not near genes chr3L_8_1990001 chr3L_1990001 RAL-818 691 chr3L 2139206 2139227 chr3L 2139287 2139308 8 80 1.5 4.5 3.0 2.0 102 chr3L 2139206 intron zormin - chr3L 2139257 intron zormin - chr3L 2139308 intron zormin - chr3L_8_2135001 chr3L_2135001 RAL-818 692 chr3L 2168771 2168807 chr3L 2168862 2168898 11 90 3.5 4.0 3.8 2.3 127 chr3L 2168771 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168898 intron CG15879 - chr3L_11_2165001 chr3L_2165001 RAL-818 693 chr3L 2331591 2331612 chr3L 2331668 2331689 12 76 2.5 1.5 2.0 4.0 98 chr3L 2331591 intron MsR1 + chr3L 2331640 intron MsR1 + chr3L 2331689 intron MsR1 + chr3L_12_2330001 chr3L_2330001 RAL-818 694 chr3L 2380342 2380375 chr3L 2380419 2380452 10 75 3.5 4.0 3.8 2.1 110 chr3L 2380342 intergenic not near genes chr3L 2380397 intergenic not near genes chr3L 2380452 intergenic not near genes chr3L_10_2380001 chr3L_2380001 RAL-818 695 chr3L 2422525 2422556 chr3L 2422604 2422635 5 79 2.0 1.0 1.5 2.0 110 chr3L 2422525 intron CG45186 + chr3L 2422580 intron CG45186 + chr3L 2422635 intron CG45186 + chr3L_5_2420001 chr3L_2420001 RAL-818 696 chr3L 2447505 2447538 chr3L 2456661 2456687 roo 12 9155 3.5 6.5 5.0 2.0 9182 chr3L 2447505 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456687 intron CG45186 + chr3L_12_2450001 chr3L_2450001 RAL-818 697 chr3L 2518247 2518258 chr3L 2518326 2518337 6 79 5.0 1.5 3.2 1.4 90 chr3L 2518247 intron,intron Spn -,CR45170 + chr3L 2518292 intron,intron Spn -,CR45170 + chr3L 2518337 intron,5` UTR Spn -,CR45170 + chr3L_6_2515001 chr3L_2515001 RAL-818 698 chr3L 2533652 2533680 chr3L 2533732 2533760 9 77 3.5 5.0 4.2 1.7 108 chr3L 2533652 intron Spn - chr3L 2533706 intron Spn - chr3L 2533760 intron Spn - chr3L_9_2530001 chr3L_2530001 RAL-818 699 chr3L 2561528 2561552 chr3L 2561605 2561629 6 77 1.0 2.0 1.5 2.4 101 chr3L 2561528 intron msn - chr3L 2561578 intron msn - chr3L 2561629 intron msn - chr3L_6_2560001 chr3L_2560001 RAL-818 700 chr3L 2674777 2674806 chr3L 2674858 2674887 7 81 1.5 1.0 1.2 3.2 110 chr3L 2674777 intron Fife - chr3L 2674832 intron Fife - chr3L 2674887 intron Fife - chr3L_7_2670001 chr3L_2670001 RAL-818 701 chr3L 2795725 2795748 chr3L 2795848 2795871 7 123 3.0 2.5 2.8 1.8 146 chr3L 2795725 intron CG43444 - chr3L 2795798 intron CG43444 - chr3L 2795871 intron CG43444 - chr3L_7_2795001 chr3L_2795001 RAL-818 702 chr3L 2927839 2927865 chr3L 2936115 2936142 Tirant 5 8276 3.0 0.0 1.5 2.0 8303 chr3L 2927839 intron Shab + chr3L 2931990 intron Shab + chr3L 2936142 intron Shab + chr3L_5_2930001 chr3L_2930001 RAL-818 703 chr3L 2966018 2966029 chr3L 2966100 2966111 7 82 4.0 2.0 3.0 1.8 93 chr3L 2966018 intergenic not near genes chr3L 2966064 intergenic not near genes chr3L 2966111 intergenic not near genes chr3L_7_2965001 chr3L_2965001 RAL-818 704 chr3L 3050905 3050930 chr3L 3050992 3051012 5 86 2.0 4.5 3.2 1.2 107 chr3L 3050905 intron CG32485 + chr3L 3050958 intron CG32485 + chr3L 3051012 exon CG32485 + chr3L_5_3050001 chr3L_3050001 RAL-818 705 chr3L 3051747 3051756 chr3L 3051989 3051998 pogo 4 242 3.5 3.0 3.2 1.0 251 chr3L 3051747 3` UTR CG32485 + chr3L 3051872 intergenic CG32485 + chr3L 3051998 intergenic CG32485 + chr3L_4_3050001 chr3L_3050001 RAL-818 706 chr3L 3061298 3061315 chr3L 3069880 3069897 Tirant 4 8579 2.5 7.0 4.8 0.7 8599 chr3L 3061298 intron CG32486 - chr3L 3065598 intron CG32486 - chr3L 3069897 intron CG32486 - chr3L_4_3065001 chr3L_3065001 RAL-818 707 chr3L 3269121 3269128 chr3L 3269211 3269218 6 91 0.0 1.0 0.5 4.0 97 chr3L 3269121 intergenic CG34265 + chr3L 3269170 intergenic CG34265 + chr3L 3269218 intergenic CG34265 + chr3L_6_3265001 chr3L_3265001 RAL-818 708 chr3L 3475076 3475113 chr3L 3475520 3475557 jockey 11 444 0.5 7.0 3.8 2.3 481 chr3L 3475076 intron CG42324 + chr3L 3475316 intron CG42324 + chr3L 3475557 intron CG42324 + chr3L_11_3475001 chr3L_3475001 RAL-818 709 chr3L 3494150 3494184 chr3L 3494284 3494318 9 134 0.0 3.5 1.8 3.2 168 chr3L 3494150 intron CG42324 + chr3L 3494234 intron CG42324 + chr3L 3494318 intron CG42324 + chr3L_9_3490001 chr3L_3490001 RAL-818 710 chr3L 3601296 3601332 chr3L 3606607 3606642 copia 14 5311 3.0 2.0 2.5 4.0 5346 chr3L 3601296 intron Eip63E + chr3L 3603969 intron Eip63E + chr3L 3606642 intron Eip63E + chr3L_14_3600001 chr3L_3600001 RAL-818 711 chr3L 3638444 3638472 chr3L 3638523 3638553 8 78 3.0 1.0 2.0 2.7 109 chr3L 3638444 intron dar1 + chr3L 3638498 intron dar1 + chr3L 3638553 intron dar1 + chr3L_8_3635001 chr3L_3635001 RAL-818 712 chr3L 3648479 3648505 chr3L 3648556 3648584 15 78 2.5 2.5 2.5 4.3 105 chr3L 3648479 intron dar1 + chr3L 3648532 intron dar1 + chr3L 3648584 intron dar1 + chr3L_15_3645001 chr3L_3645001 RAL-818 713 chr3L 3664841 3664872 chr3L 3664925 3664955 7 84 3.0 1.0 2.0 2.3 114 chr3L 3664841 intergenic not near genes chr3L 3664898 intergenic not near genes chr3L 3664955 intergenic not near genes chr3L_7_3660001 chr3L_3660001 RAL-818 714 chr3L 3753261 3753292 chr3L 3753354 3753385 9 93 3.0 2.0 2.5 2.6 124 chr3L 3753261 intron CG32264 - chr3L 3753323 intron CG32264 - chr3L 3753385 intron CG32264 - chr3L_9_3750001 chr3L_3750001 RAL-818 715 chr3L 3793030 3793058 chr3L 3793170 3793198 9 139 0.5 0.5 0.5 6.0 168 chr3L 3793030 intron CG32264 - chr3L 3793114 intron CG32264 - chr3L 3793198 intron CG32264 - chr3L_9_3790001 chr3L_3790001 RAL-818 716 chr3L 3798060 3798072 chr3L 3798141 3798153 7 81 4.0 2.5 3.2 1.7 93 chr3L 3798060 intron CG32264 - chr3L 3798106 intron CG32264 - chr3L 3798153 intron CG32264 - chr3L_7_3795001 chr3L_3795001 RAL-818 717 chr3L 3877434 3877444 chr3L 3877562 3877572 6 128 0.0 1.5 0.8 3.3 138 chr3L 3877434 intergenic not near genes chr3L 3877503 intergenic not near genes chr3L 3877572 intergenic not near genes chr3L_6_3875001 chr3L_3875001 RAL-818 718 chr3L 3926007 3926038 chr3L 3926098 3926131 4 91 0.0 0.0 0.0 4.0 124 chr3L 3926007 intron Eip63F-1 - chr3L 3926069 intron Eip63F-1 - chr3L 3926131 intron Eip63F-1 - chr3L_4_3925001 chr3L_3925001 RAL-818 719 chr3L 4146810 4146837 chr3L 4146892 4146919 4 82 0.0 1.5 0.8 2.2 109 chr3L 4146810 intergenic not near genes chr3L 4146864 intergenic not near genes chr3L 4146919 intergenic not near genes chr3L_4_4145001 chr3L_4145001 RAL-818 720 chr3L 4519420 4519451 chr3L 4519495 4519528 8 77 4.5 5.5 5.0 1.3 108 chr3L 4519420 intron Tie - chr3L 4519474 intron Tie - chr3L 4519528 intron Tie - chr3L_8_4515001 chr3L_4515001 RAL-818 721 chr3L 4597216 4597233 chr3L 4597297 4597308 6 81 2.0 4.0 3.0 1.5 92 chr3L 4597216 intron Src64B - chr3L 4597262 intron Src64B - chr3L 4597308 intron Src64B - chr3L_6_4595001 chr3L_4595001 RAL-818 722 chr3L 4652577 4652595 chr3L 4652660 4652677 10 83 1.5 3.0 2.2 3.1 100 chr3L 4652577 intron axo - chr3L 4652627 intron axo - chr3L 4652677 intron axo - chr3L_10_4650001 chr3L_4650001 RAL-818 723 chr3L 4706086 4706104 chr3L 4706576 4706594 5 490 2.0 0.5 1.2 2.3 508 chr3L 4706086 intron RhoGEF64C + chr3L 4706340 intron RhoGEF64C + chr3L 4706594 intron RhoGEF64C + chr3L_5_4705001 chr3L_4705001 RAL-818 724 chr3L 4858304 4858331 chr3L 4858393 4858421 14 88 11.5 3.0 7.2 1.7 117 chr3L 4858304 intergenic not near genes chr3L 4858362 intergenic not near genes chr3L 4858421 intergenic not near genes chr3L_14_4855001 chr3L_4855001 RAL-818 725 chr3L 4907976 4907986 chr3L 4908052 4908062 5 76 1.0 1.0 1.0 2.5 86 chr3L 4907976 intergenic not near genes chr3L 4908019 intergenic not near genes chr3L 4908062 intergenic not near genes chr3L_5_4905001 chr3L_4905001 RAL-818 726 chr3L 5017040 5017068 chr3L 5017130 5017161 13 93 3.0 2.5 2.8 3.4 121 chr3L 5017040 intron Con - chr3L 5017100 intron Con - chr3L 5017161 intron Con - chr3L_13_5015001 chr3L_5015001 RAL-818 727 chr3L 5096140 5096169 chr3L 5096369 5096398 8 226 1.5 1.5 1.5 3.2 258 chr3L 5096140 intergenic not near genes chr3L 5096269 intergenic not near genes chr3L 5096398 intergenic not near genes chr3L_8_5095001 chr3L_5095001 RAL-818 728 chr3L 5104483 5104503 chr3L 5124617 5124637 4 20134 3.5 3.0 3.2 1.0 20154 chr3L 5104483 intergenic not near genes chr3L 5114560 intergenic not near genes chr3L 5124637 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-818 729 chr3L 5164643 5164663 chr3L 5164719 5164739 4 76 2.0 1.0 1.5 1.6 96 chr3L 5164643 intron shep - chr3L 5164691 intron shep - chr3L 5164739 intron shep - chr3L_4_5160001 chr3L_5160001 RAL-818 730 chr3L 5265347 5265374 chr3L 5265455 5265482 15 106 2.0 2.5 2.2 4.7 135 chr3L 5265347 intron shep - chr3L 5265414 intron shep - chr3L 5265482 intron shep - chr3L_15_5265001 chr3L_5265001 RAL-818 731 chr3L 5271171 5271193 chr3L 5271247 5271271 4 78 0.5 3.0 1.8 1.4 100 chr3L 5271171 intron shep - chr3L 5271221 intron shep - chr3L 5271271 intron shep - chr3L_4_5270001 chr3L_5270001 RAL-818 732 chr3L 5339827 5339844 chr3L 5340071 5340088 5 244 6.0 2.5 4.2 1.0 261 chr3L 5339827 intergenic not near genes chr3L 5339958 intergenic not near genes chr3L 5340088 intergenic not near genes chr3L_5_5335001 chr3L_5335001 RAL-818 733 chr3L 5490390 5490419 chr3L 5490536 5490563 10 146 0.5 0.5 0.5 6.7 173 chr3L 5490390 intergenic not near genes chr3L 5490476 intergenic not near genes chr3L 5490563 intergenic not near genes chr3L_10_5490001 chr3L_5490001 RAL-818 734 chr3L 5910049 5910064 chr3L 5910290 5910305 pogo 4 241 1.0 4.0 2.5 1.1 256 chr3L 5910049 intron CG13288 + chr3L 5910177 intron CG13288 + chr3L 5910305 intron CG13288 + chr3L_4_5910001 chr3L_5910001 RAL-818 735 chr3L 5916827 5916861 chr3L 5916914 5916917 9 83 1.5 2.5 2.0 3.0 90 chr3L 5916827 intron CG13288 + chr3L 5916872 intron CG13288 + chr3L 5916917 exon CG13288 + chr3L_9_5915001 chr3L_5915001 RAL-818 736 chr3L 5926319 5926347 chr3L 5926508 5926524 BS 11 183 4.5 4.0 4.2 2.1 205 chr3L 5926319 intron Vap-33B + chr3L 5926422 intron Vap-33B + chr3L 5926524 intron Vap-33B + chr3L_11_5925001 chr3L_5925001 RAL-818 737 chr3L 6052144 6052150 chr3L 6052229 6052236 4 86 0.0 3.5 1.8 1.4 92 chr3L 6052144 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052190 intergenic Jon65Aii +,Jon65Aiii + chr3L 6052236 intergenic Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-818 738 chr3L 6052653 6052667 chr3L 6052738 6052750 6 83 6.5 7.0 6.8 0.8 97 chr3L 6052653 exon Jon65Aii + chr3L 6052702 intron Jon65Aii + chr3L 6052750 exon Jon65Aii + chr3L_6_6050001 chr3L_6050001 RAL-818 739 chr3L 6116702 6116723 chr3L 6116786 6116807 6 84 2.0 1.5 1.8 2.1 105 chr3L 6116702 intron Ets65A + chr3L 6116754 intron Ets65A + chr3L 6116807 intron Ets65A + chr3L_6_6115001 chr3L_6115001 RAL-818 740 chr3L 6220912 6220946 chr3L 6230064 6230098 roo 8 9151 2.0 3.5 2.8 2.1 9186 chr3L 6220912 5` UTR pncr008:3L + chr3L 6225505 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_8_6225001 chr3L_6225001 RAL-818 741 chr3L 6524745 6524772 chr3L 6524841 6524868 7 96 3.5 1.5 2.5 2.0 123 chr3L 6524745 intron sfl + chr3L 6524806 intron sfl + chr3L 6524868 intron sfl + chr3L_7_6520001 chr3L_6520001 RAL-818 742 chr3L 6525649 6525675 chr3L 6525723 6525755 11 76 2.5 2.0 2.2 3.4 106 chr3L 6525649 intron sfl + chr3L 6525702 intron sfl + chr3L 6525755 intron sfl + chr3L_11_6525001 chr3L_6525001 RAL-818 743 chr3L 6563072 6563108 chr3L 6563161 6563198 8 90 1.0 0.0 0.5 5.3 126 chr3L 6563072 intron CG18769 + chr3L 6563135 intron CG18769 + chr3L 6563198 intron,3` UTR CG18769 +,jv - chr3L_8_6560001 chr3L_6560001 RAL-818 744 chr3L 6573654 6573683 chr3L 6573757 6573759 14 100 1.5 2.0 1.8 5.0 105 chr3L 6573654 intron,intron CG18769 +,jv - chr3L 6573706 intron,intron CG18769 +,jv - chr3L 6573759 intron,intron CG18769 +,jv - chr3L_14_6570001 chr3L_6570001 RAL-818 745 chr3L 6786890 6786915 chr3L 6786983 6787008 8 93 7.0 0.5 3.8 1.7 118 chr3L 6786890 3` UTR CR45759 - chr3L 6786949 3` UTR CR45759 - chr3L 6787008 3` UTR CR45759 - chr3L_8_6785001 chr3L_6785001 RAL-818 746 chr3L 6855920 6855949 chr3L 6860703 6860733 Doc 4 4784 6.5 0.5 3.5 0.9 4813 chr3L 6855920 intergenic not near genes chr3L 6858326 intergenic not near genes chr3L 6860733 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-818 747 chr3L 6868721 6868739 chr3L 6868799 6868817 5 78 1.5 1.5 1.5 2.0 96 chr3L 6868721 intergenic not near genes chr3L 6868769 intergenic not near genes chr3L 6868817 intergenic not near genes chr3L_5_6865001 chr3L_6865001 RAL-818 748 chr3L 6974503 6974523 chr3L 6974604 6974624 8 101 0.0 5.5 2.8 2.1 121 chr3L 6974503 intron Galphai - chr3L 6974564 intron Galphai - chr3L 6974624 intron Galphai - chr3L_8_6970001 chr3L_6970001 RAL-818 749 chr3L 7032521 7032538 chr3L 7032886 7032903 7 365 2.5 4.5 3.5 1.6 382 chr3L 7032521 intron Mp + chr3L 7032712 intron Mp + chr3L 7032903 intron Mp + chr3L_7_7030001 chr3L_7030001 RAL-818 750 chr3L 7090022 7090056 chr3L 7090103 7090137 5 81 1.0 2.5 1.8 1.8 115 chr3L 7090022 intergenic not near genes chr3L 7090080 intergenic not near genes chr3L 7090137 intergenic not near genes chr3L_5_7090001 chr3L_7090001 RAL-818 751 chr3L 7201740 7201755 chr3L 7201816 7201830 7 76 6.0 1.5 3.8 1.5 90 chr3L 7201740 intergenic not near genes chr3L 7201785 intergenic not near genes chr3L 7201830 intergenic not near genes chr3L_7_7200001 chr3L_7200001 RAL-818 752 chr3L 7201756 7201765 chr3L 7201812 7201842 6 74 5.0 1.0 3.0 1.5 86 chr3L 7201756 intergenic not near genes chr3L 7201799 intergenic not near genes chr3L 7201842 intergenic not near genes chr3L_6_7200001 chr3L_7200001 RAL-818 753 chr3L 7277106 7277138 chr3L 7277208 7277240 7 102 2.5 2.0 2.2 2.2 134 chr3L 7277106 exon unc-13-4A - chr3L 7277173 intron unc-13-4A - chr3L 7277240 intron unc-13-4A - chr3L_7_7275001 chr3L_7275001 RAL-818 754 chr3L 7285458 7285478 chr3L 7285536 7285555 4 78 0.5 1.5 1.0 2.0 97 chr3L 7285458 intron unc-13-4A - chr3L 7285506 intron unc-13-4A - chr3L 7285555 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-818 755 chr3L 7426013 7426040 chr3L 7426395 7426420 7 379 3.0 3.5 3.2 1.7 407 chr3L 7426013 intron CG42458 + chr3L 7426216 intron CG42458 + chr3L 7426420 intron CG42458 + chr3L_7_7425001 chr3L_7425001 RAL-818 756 chr3L 7436130 7436149 chr3L 7436204 7436215 4 76 2.5 4.5 3.5 0.9 85 chr3L 7436130 intron CG42458 + chr3L 7436172 intron CG42458 + chr3L 7436215 intron CG42458 + chr3L_4_7435001 chr3L_7435001 RAL-818 757 chr3L 7462969 7462991 chr3L 7463039 7463070 5 77 0.5 1.5 1.0 2.5 101 chr3L 7462969 intergenic not near genes chr3L 7463020 intergenic not near genes chr3L 7463070 intergenic not near genes chr3L_5_7460001 chr3L_7460001 RAL-818 758 chr3L 7464871 7464891 chr3L 7464939 7464966 5 73 1.5 4.5 3.0 1.2 95 chr3L 7464871 intergenic not near genes chr3L 7464918 intergenic not near genes chr3L 7464966 intergenic not near genes chr3L_5_7460001 chr3L_7460001 RAL-818 759 chr3L 7588045 7588062 chr3L 7588155 7588165 7 106 1.5 4.5 3.0 1.8 120 chr3L 7588045 intergenic not near genes chr3L 7588105 intergenic not near genes chr3L 7588165 intergenic CG7716 - chr3L_7_7585001 chr3L_7585001 RAL-818 760 chr3L 7591152 7591182 chr3L 7591236 7591244 5 79 2.0 1.5 1.8 1.8 92 chr3L 7591152 intergenic CG7716 - chr3L 7591198 intergenic CG7716 - chr3L 7591244 intergenic CG7716 - chr3L_5_7590001 chr3L_7590001 RAL-818 761 chr3L 7793714 7793744 chr3L 7800766 7800796 297 10 7052 1.5 4.0 2.8 2.6 7082 chr3L 7793714 intron CG32369 - chr3L 7797255 intron CG32369 - chr3L 7800796 intron CG32369 - chr3L_10_7795001 chr3L_7795001 RAL-818 762 chr3L 7985374 7985397 chr3L 7987703 7987725 NOF 4 2329 1.5 0.0 0.8 2.2 2351 chr3L 7985374 intron nmo + chr3L 7986550 intron nmo + chr3L 7987725 intron nmo + chr3L_4_7985001 chr3L_7985001 RAL-818 763 chr3L 7999547 7999561 chr3L 7999792 7999806 6 245 2.0 4.0 3.0 1.5 259 chr3L 7999547 intron nmo + chr3L 7999676 intron nmo + chr3L 7999806 intron nmo + chr3L_6_7995001 chr3L_7995001 RAL-818 764 chr3L 8058871 8058907 chr3L 8058954 8058988 7 83 0.5 1.0 0.8 3.9 117 chr3L 8058871 intergenic bip1 - chr3L 8058930 intergenic bip1 - chr3L 8058988 intergenic bip1 - chr3L_7_8055001 chr3L_8055001 RAL-818 765 chr3L 8087767 8087797 chr3L 8087906 8087936 5 139 2.5 2.5 2.5 1.4 169 chr3L 8087767 intron,3` UTR Ect4 +,CG7565 - chr3L 8087852 intron,3` UTR Ect4 +,CG7565 - chr3L 8087936 intron,3` UTR Ect4 +,CG7565 - chr3L_5_8085001 chr3L_8085001 RAL-818 766 chr3L 8208127 8208153 chr3L 8208259 8208272 8 128 3.0 1.0 2.0 2.7 145 chr3L 8208127 intergenic not near genes chr3L 8208200 intergenic not near genes chr3L 8208272 intergenic not near genes chr3L_8_8205001 chr3L_8205001 RAL-818 767 chr3L 8226725 8226749 chr3L 8226824 8226848 6 99 0.0 0.0 0.0 6.0 123 chr3L 8226725 intergenic not near genes chr3L 8226786 intergenic not near genes chr3L 8226848 intergenic not near genes chr3L_6_8225001 chr3L_8225001 RAL-818 768 chr3L 8295791 8295821 chr3L 8295949 8295979 14 158 2.0 3.5 2.8 3.7 188 chr3L 8295791 intergenic CG7201 - chr3L 8295885 intergenic not near genes chr3L 8295979 intergenic not near genes chr3L_14_8295001 chr3L_8295001 RAL-818 769 chr3L 8364524 8364535 chr3L 8364615 8364626 5 91 1.5 1.0 1.2 2.3 102 chr3L 8364524 intergenic not near genes chr3L 8364575 intergenic not near genes chr3L 8364626 intergenic not near genes chr3L_5_8360001 chr3L_8360001 RAL-818 770 chr3L 8481799 8481804 chr3L 8490937 8490954 roo 5 9144 2.0 3.5 2.8 1.3 9155 chr3L 8481799 intron CG43163 - chr3L 8486376 intron CG43163 - chr3L 8490954 intron CG43163 - chr3L_5_8485001 chr3L_8485001 RAL-818 771 chr3L 8498301 8498328 chr3L 8505768 8505795 blood 5 7467 0.0 2.0 1.0 2.5 7494 chr3L 8498301 intron CG43163 - chr3L 8502048 intron CG43163 - chr3L 8505795 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-818 772 chr3L 8656245 8656249 chr3L 8656327 8656350 4 88 2.5 2.5 2.5 1.1 105 chr3L 8656245 intergenic not near genes chr3L 8656298 intergenic not near genes chr3L 8656350 intergenic not near genes chr3L_4_8655001 chr3L_8655001 RAL-818 773 chr3L 8849207 8849236 chr3L 8849287 8849315 10 78 2.5 0.0 1.2 4.5 108 chr3L 8849207 intron dally + chr3L 8849261 intron dally + chr3L 8849315 intron dally + chr3L_10_8845001 chr3L_8845001 RAL-818 774 chr3L 9003950 9003967 chr3L 9004033 9004051 5 84 4.5 1.5 3.0 1.2 101 chr3L 9003950 intergenic not near genes chr3L 9004000 intergenic not near genes chr3L 9004051 intergenic not near genes chr3L_5_9000001 chr3L_9000001 RAL-818 775 chr3L 9013690 9013691 chr3L 18417066 18417066 5 9403375 16.0 14.0 15.0 0.3 9403376 chr3L 9013690 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-818 776 chr3L 9076925 9076956 chr3L 9084485 9084516 412 15 7559 3.0 2.5 2.8 3.9 7591 chr3L 9076925 exon Tequila + chr3L 9080720 intron Tequila + chr3L 9084516 exon Tequila + chr3L_15_9080001 chr3L_9080001 RAL-818 777 chr3L 9086723 9086747 chr3L 9086806 9086832 8 82 10.5 10.0 10.2 0.7 109 chr3L 9086723 exon Tequila + chr3L 9086778 exon Tequila + chr3L 9086832 exon Tequila + chr3L_8_9085001 chr3L_9085001 RAL-818 778 chr3L 9130558 9130579 chr3L 9134318 9134340 412 5 3761 5.5 2.5 4.0 1.0 3782 chr3L 9130558 intergenic bol - chr3L 9132449 intergenic not near genes chr3L 9134340 intergenic Dhpr + chr3L_5_9130001 chr3L_9130001 RAL-818 779 chr3L 9219244 9219274 chr3L 9219915 9219946 jockey 12 668 4.0 4.5 4.2 2.3 702 chr3L 9219244 intergenic not near genes chr3L 9219595 intergenic not near genes chr3L 9219946 intergenic not near genes chr3L_12_9215001 chr3L_9215001 RAL-818 780 chr3L 9239699 9239725 chr3L 9240004 9240028 11 303 1.5 5.0 3.2 2.6 329 chr3L 9239699 intergenic not near genes chr3L 9239864 intergenic not near genes chr3L 9240028 intergenic not near genes chr3L_11_9235001 chr3L_9235001 RAL-818 781 chr3L 9241122 9241154 chr3L 9241202 9241234 6 79 1.5 1.0 1.2 2.7 112 chr3L 9241122 intergenic not near genes chr3L 9241178 intergenic not near genes chr3L 9241234 intergenic not near genes chr3L_6_9240001 chr3L_9240001 RAL-818 782 chr3L 9431849 9431872 chr3L 9431924 9431951 9 79 2.0 3.0 2.5 2.6 102 chr3L 9431849 intron MTF-1 + chr3L 9431900 intron MTF-1 + chr3L 9431951 intron MTF-1 + chr3L_9_9430001 chr3L_9430001 RAL-818 783 chr3L 9501707 9501720 chr3L 9502193 9502206 roo 4 486 3.0 3.0 3.0 1.0 499 chr3L 9501707 intron path - chr3L 9501956 intron path - chr3L 9502206 intron path - chr3L_4_9500001 chr3L_9500001 RAL-818 784 chr3L 9513448 9513471 chr3L 9513535 9513558 5 86 1.5 0.0 0.8 2.8 110 chr3L 9513448 intergenic CG33702 - chr3L 9513503 intergenic CG33702 - chr3L 9513558 intergenic CG33702 - chr3L_5_9510001 chr3L_9510001 RAL-818 785 chr3L 9571909 9571920 chr3L 9572254 9572268 jockey 4 347 3.0 0.0 1.5 1.6 359 chr3L 9571909 intron CG42673 + chr3L 9572088 intron CG42673 + chr3L 9572268 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-818 786 chr3L 9575913 9575940 chr3L 9580991 9581014 jockey 8 5077 4.5 6.5 5.5 1.2 5101 chr3L 9575913 intron CG42673 + chr3L 9578464 intron CG42673 + chr3L 9581014 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-818 787 chr3L 9635588 9635602 chr3L 9635665 9635679 9 77 1.0 4.0 2.5 2.6 91 chr3L 9635588 intron fry - chr3L 9635634 intron fry - chr3L 9635679 intron fry - chr3L_9_9635001 chr3L_9635001 RAL-818 788 chr3L 9699933 9699959 chr3L 9700020 9700038 14 86 2.5 2.0 2.2 4.4 105 chr3L 9699933 3` UTR UbcD4 + chr3L 9699986 3` UTR UbcD4 + chr3L 9700038 3` UTR UbcD4 + chr3L_14_9695001 chr3L_9695001 RAL-818 789 chr3L 9715597 9715627 chr3L 9715673 9715704 5 76 1.0 4.5 2.8 1.3 107 chr3L 9715597 intron vsg + chr3L 9715650 intron vsg + chr3L 9715704 intron vsg + chr3L_5_9715001 chr3L_9715001 RAL-818 790 chr3L 9742872 9742908 chr3L 9743083 9743119 25 206 5.0 4.0 4.5 4.5 247 chr3L 9742872 intron,intron CG42268 -,CR44348 + chr3L 9742996 intron,intron CG42268 -,CR44348 + chr3L 9743119 intron,intron CG42268 -,CR44348 + chr3L_25_9740001 chr3L_9740001 RAL-818 791 chr3L 9745486 9745518 chr3L 9745571 9745604 16 86 3.5 1.5 2.5 4.6 118 chr3L 9745486 intron CG42268 - chr3L 9745545 intron CG42268 - chr3L 9745604 intron CG42268 - chr3L_16_9745001 chr3L_9745001 RAL-818 792 chr3L 9809737 9809746 chr3L 9809813 9809822 4 75 3.5 2.5 3.0 1.0 85 chr3L 9809737 intergenic not near genes chr3L 9809780 intergenic not near genes chr3L 9809822 intergenic not near genes chr3L_4_9805001 chr3L_9805001 RAL-818 793 chr3L 9907890 9907893 chr3L 9907953 9907962 4 66 5.5 2.5 4.0 0.8 72 chr3L 9907890 intergenic CG34356 + chr3L 9907926 intergenic CG34356 + chr3L 9907962 intergenic CG34356 + chr3L_4_9905001 chr3L_9905001 RAL-818 794 chr3L 9929672 9929700 chr3L 9938452 9938480 roo 4 8777 1.0 3.5 2.2 1.2 8808 chr3L 9929672 intron CG34356 + chr3L 9934076 intron CG34356 + chr3L 9938480 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-818 795 chr3L 9951197 9951232 chr3L 9951284 9951311 5 83 3.0 3.5 3.2 1.2 114 chr3L 9951197 intron CG34356 + chr3L 9951254 intron CG34356 + chr3L 9951311 intron CG34356 + chr3L_5_9950001 chr3L_9950001 RAL-818 796 chr3L 10011587 10011623 chr3L 10011669 10011705 14 81 1.0 2.0 1.5 5.6 118 chr3L 10011587 intron dpr6 + chr3L 10011646 intron dpr6 + chr3L 10011705 intron dpr6 + chr3L_14_10010001 chr3L_10010001 RAL-818 797 chr3L 10032559 10032565 chr3L 10032646 10032652 5 87 0.0 3.0 1.5 2.0 93 chr3L 10032559 intron dpr6 + chr3L 10032606 intron dpr6 + chr3L 10032652 intron dpr6 + chr3L_5_10030001 chr3L_10030001 RAL-818 798 chr3L 10043876 10043907 chr3L 10043958 10043989 11 82 2.0 2.5 2.2 3.4 113 chr3L 10043876 intron dpr6 + chr3L 10043932 intron dpr6 + chr3L 10043989 intron dpr6 + chr3L_11_10040001 chr3L_10040001 RAL-818 799 chr3L 10082569 10082579 chr3L 10082647 10082652 4 77 0.0 0.5 0.2 3.3 83 chr3L 10082569 intron dpr6 + chr3L 10082610 intron dpr6 + chr3L 10082652 intron dpr6 + chr3L_4_10080001 chr3L_10080001 RAL-818 800 chr3L 10204517 10204550 chr3L 10204778 10204778 7 255 4.0 0.0 2.0 2.3 261 chr3L 10204517 intergenic not near genes chr3L 10204648 intergenic not near genes chr3L 10204778 intergenic not near genes chr3L_7_10200001 chr3L_10200001 RAL-818 801 chr3L 10214814 10214830 chr3L 10214916 10214932 7 102 1.0 3.0 2.0 2.3 118 chr3L 10214814 intergenic not near genes chr3L 10214873 intergenic not near genes chr3L 10214932 intergenic not near genes chr3L_7_10210001 chr3L_10210001 RAL-818 802 chr3L 10222768 10222773 chr3L 10222848 10222853 4 80 0.0 2.5 1.2 1.8 85 chr3L 10222768 intron scramb1 - chr3L 10222810 intron scramb1 - chr3L 10222853 intron scramb1 - chr3L_4_10220001 chr3L_10220001 RAL-818 803 chr3L 10250332 10250359 chr3L 10250423 10250450 10 89 0.0 3.5 1.8 3.6 118 chr3L 10250332 intergenic not near genes chr3L 10250391 intergenic not near genes chr3L 10250450 intergenic not near genes chr3L_10_10250001 chr3L_10250001 RAL-818 804 chr3L 10298669 10298700 chr3L 10298756 10298787 7 87 1.0 1.0 1.0 3.5 118 chr3L 10298669 intergenic not near genes chr3L 10298728 intergenic not near genes chr3L 10298787 intergenic not near genes chr3L_7_10295001 chr3L_10295001 RAL-818 805 chr3L 10300061 10300075 chr3L 10300165 10300179 4 104 0.0 1.5 0.8 2.2 118 chr3L 10300061 intergenic not near genes chr3L 10300120 intergenic not near genes chr3L 10300179 intergenic not near genes chr3L_4_10300001 chr3L_10300001 RAL-818 806 chr3L 10308740 10308770 chr3L 10308816 10308846 7 77 3.5 2.5 3.0 1.8 106 chr3L 10308740 intergenic not near genes chr3L 10308793 intergenic not near genes chr3L 10308846 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-818 807 chr3L 10310349 10310383 chr3L 10310446 10310480 9 97 1.5 1.5 1.5 3.6 131 chr3L 10310349 intergenic not near genes chr3L 10310414 intergenic not near genes chr3L 10310480 intergenic not near genes chr3L_9_10310001 chr3L_10310001 RAL-818 808 chr3L 10314125 10314156 chr3L 10314211 10314242 4 85 0.5 1.0 0.8 2.2 117 chr3L 10314125 intergenic not near genes chr3L 10314184 intergenic not near genes chr3L 10314242 intergenic not near genes chr3L_4_10310001 chr3L_10310001 RAL-818 809 chr3L 10326272 10326298 chr3L 10326352 10326378 7 80 0.0 1.5 0.8 3.9 106 chr3L 10326272 intergenic CR45244 + chr3L 10326325 intergenic CR45244 + chr3L 10326378 intergenic CR45244 + chr3L_7_10325001 chr3L_10325001 RAL-818 810 chr3L 10399760 10399788 chr3L 10399891 10399919 13 132 3.0 4.5 3.8 2.7 159 chr3L 10399760 intergenic not near genes chr3L 10399840 intergenic not near genes chr3L 10399919 intergenic not near genes chr3L_13_10395001 chr3L_10395001 RAL-818 811 chr3L 10414938 10414977 chr3L 10417310 10417349 Doc 7 2371 1.0 1.5 1.2 3.2 2411 chr3L 10414938 intergenic CG12362 + chr3L 10416144 intergenic not near genes chr3L 10417349 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-818 812 chr3L 10417579 10417604 chr3L 10417656 10417679 11 74 1.0 5.0 3.0 2.8 100 chr3L 10417579 intergenic not near genes chr3L 10417629 intergenic not near genes chr3L 10417679 intergenic not near genes chr3L_11_10415001 chr3L_10415001 RAL-818 813 chr3L 10444511 10444533 chr3L 10444587 10444609 7 73 2.0 1.0 1.5 2.8 98 chr3L 10444511 intergenic not near genes chr3L 10444560 intergenic not near genes chr3L 10444609 intergenic not near genes chr3L_7_10440001 chr3L_10440001 RAL-818 814 chr3L 10509501 10509514 chr3L 10509618 10509643 8 126 1.5 1.0 1.2 3.6 142 chr3L 10509501 intron A2bp1 + chr3L 10509572 intron A2bp1 + chr3L 10509643 intron A2bp1 + chr3L_8_10505001 chr3L_10505001 RAL-818 815 chr3L 10600458 10600466 chr3L 10600540 10600548 4 82 4.0 0.0 2.0 1.3 90 chr3L 10600458 intergenic not near genes chr3L 10600503 intergenic not near genes chr3L 10600548 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-818 816 chr3L 10603714 10603729 chr3L 10603904 10603919 6 190 0.5 3.0 1.8 2.1 205 chr3L 10603714 intergenic not near genes chr3L 10603816 intergenic not near genes chr3L 10603919 intergenic not near genes chr3L_6_10600001 chr3L_10600001 RAL-818 817 chr3L 10621854 10621879 chr3L 10621941 10621965 4 87 1.5 1.0 1.2 1.8 111 chr3L 10621854 intergenic not near genes chr3L 10621910 intergenic not near genes chr3L 10621965 intergenic not near genes chr3L_4_10620001 chr3L_10620001 RAL-818 818 chr3L 10658089 10658192 chr3L 10658165 10658319 7 91 0.5 0.5 0.5 4.7 230 chr3L 10658089 intron CG32066 - chr3L 10658204 intron CG32066 - chr3L 10658319 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-818 819 chr3L 10721989 10722014 chr3L 10722070 10722096 10 82 6.0 0.0 3.0 2.5 107 chr3L 10721989 intergenic not near genes chr3L 10722042 intergenic not near genes chr3L 10722096 intergenic not near genes chr3L_10_10720001 chr3L_10720001 RAL-818 820 chr3L 10762842 10762859 chr3L 10762913 10762940 4 78 3.5 1.5 2.5 1.1 98 chr3L 10762842 intergenic not near genes chr3L 10762891 intergenic not near genes chr3L 10762940 intergenic not near genes chr3L_4_10760001 chr3L_10760001 RAL-818 821 chr3L 10823560 10823575 chr3L 10824416 10824431 4 856 3.5 30.0 16.8 0.2 871 chr3L 10823560 intergenic not near genes chr3L 10823996 intergenic not near genes chr3L 10824431 intergenic not near genes chr3L_4_10820001 chr3L_10820001 RAL-818 822 chr3L 10937202 10937219 chr3L 10937297 10937314 4 95 1.5 0.0 0.8 2.2 112 chr3L 10937202 intergenic not near genes chr3L 10937258 intergenic not near genes chr3L 10937314 intergenic not near genes chr3L_4_10935001 chr3L_10935001 RAL-818 823 chr3L 10956458 10956468 chr3L 10956576 10956586 4 118 2.0 3.0 2.5 1.1 128 chr3L 10956458 intergenic not near genes chr3L 10956522 intergenic not near genes chr3L 10956586 intergenic not near genes chr3L_4_10955001 chr3L_10955001 RAL-818 824 chr3L 11054989 11055000 chr3L 11055093 11055103 4 104 8.5 3.0 5.8 0.6 114 chr3L 11054989 intron CG7888 + chr3L 11055046 intron CG7888 + chr3L 11055103 intron CG7888 + chr3L_4_11055001 chr3L_11055001 RAL-818 825 chr3L 11083515 11083540 chr3L 11083613 11083638 8 98 1.5 2.5 2.0 2.7 123 chr3L 11083515 intron JIL-1 - chr3L 11083576 intron JIL-1 - chr3L 11083638 intron JIL-1 - chr3L_8_11080001 chr3L_11080001 RAL-818 826 chr3L 11087062 11087090 chr3L 11088850 11088877 S-element 4 1788 1.5 6.0 3.8 0.8 1815 chr3L 11087062 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_4_11085001 chr3L_11085001 RAL-818 827 chr3L 11105301 11105326 chr3L 11107012 11107029 X-element 7 1709 2.5 3.5 3.0 1.8 1728 chr3L 11105301 intergenic not near genes chr3L 11106165 intergenic not near genes chr3L 11107029 exon CG32073 - chr3L_7_11105001 chr3L_11105001 RAL-818 828 chr3L 11145544 11145556 chr3L 11145634 11145646 6 90 0.0 2.0 1.0 3.0 102 chr3L 11145544 intron CG32082 + chr3L 11145595 intron CG32082 + chr3L 11145646 intron CG32082 + chr3L_6_11145001 chr3L_11145001 RAL-818 829 chr3L 11290624 11290657 chr3L 11290947 11290980 8 322 2.0 2.0 2.0 2.7 356 chr3L 11290624 intron CG6175 - chr3L 11290802 intron CG6175 - chr3L 11290980 intron CG6175 - chr3L_8_11290001 chr3L_11290001 RAL-818 830 chr3L 11329687 11329716 chr3L 11332892 11332894 jockey 7 3201 6.0 1.0 3.5 1.6 3207 chr3L 11329687 intergenic not near genes chr3L 11331290 intergenic not near genes chr3L 11332894 intergenic not near genes chr3L_7_11330001 chr3L_11330001 RAL-818 831 chr3L 11353131 11353167 chr3L 11353214 11353250 6 83 1.0 1.0 1.0 3.0 119 chr3L 11353131 intergenic not near genes chr3L 11353190 intergenic not near genes chr3L 11353250 intergenic not near genes chr3L_6_11350001 chr3L_11350001 RAL-818 832 chr3L 11432905 11432925 chr3L 11432984 11433004 5 79 3.5 1.5 2.5 1.4 99 chr3L 11432905 intergenic not near genes chr3L 11432954 intergenic not near genes chr3L 11433004 intergenic not near genes chr3L_5_11430001 chr3L_11430001 RAL-818 833 chr3L 11564789 11564814 chr3L 11572405 11572438 412 6 7614 3.0 2.0 2.5 1.7 7649 chr3L 11564789 exon CG33267 + chr3L 11568614 intron CG33267 + chr3L 11572438 exon CG33267 + chr3L_6_11565001 chr3L_11565001 RAL-818 834 chr3L 11723085 11723095 chr3L 11727880 11727890 Doc 4 4795 5.0 1.0 3.0 1.0 4805 chr3L 11723085 3` UTR Bmcp + chr3L 11725488 intron Bmcp + chr3L 11727890 3` UTR Bmcp + chr3L_4_11725001 chr3L_11725001 RAL-818 835 chr3L 11729680 11729704 chr3L 11729756 11729780 10 76 2.0 3.5 2.8 2.6 100 chr3L 11729680 exon CG32088 + chr3L 11729730 intron CG32088 + chr3L 11729780 exon CG32088 + chr3L_10_11725001 chr3L_11725001 RAL-818 836 chr3L 11744012 11744038 chr3L 11744120 11744144 11 107 5.5 0.0 2.8 2.9 132 chr3L 11744012 exon CG6024 - chr3L 11744078 intron CG6024 - chr3L 11744144 intron CG6024 - chr3L_11_11740001 chr3L_11740001 RAL-818 837 chr3L 11757920 11757933 chr3L 11758017 11758030 4 97 2.0 0.0 1.0 2.0 110 chr3L 11757920 intron CG6024 - chr3L 11757975 intron CG6024 - chr3L 11758030 intron CG6024 - chr3L_4_11755001 chr3L_11755001 RAL-818 838 chr3L 802565 802566 chr3L 11777678 11777678 7 10975112 10.5 11.0 10.8 0.6 10975113 chr3L 802565 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_7_6290001 chr3L_6290001 RAL-818 839 chr3L 11846402 11846412 chr3L 11846510 11846520 4 108 0.5 1.0 0.8 2.2 118 chr3L 11846402 intergenic not near genes chr3L 11846461 intergenic not near genes chr3L 11846520 intergenic not near genes chr3L_4_11845001 chr3L_11845001 RAL-818 840 chr3L 11864553 11864583 chr3L 11865848 11865878 pogo 12 1294 3.0 1.0 2.0 4.0 1325 chr3L 11864553 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865878 intron CG44837 - chr3L_12_11865001 chr3L_11865001 RAL-818 841 chr3L 11871350 11871369 chr3L 11871429 11871447 5 79 0.5 0.5 0.5 3.3 97 chr3L 11871350 intron CG44837 - chr3L 11871398 intron CG44837 - chr3L 11871447 intron CG44837 - chr3L_5_11870001 chr3L_11870001 RAL-818 842 chr3L 12013913 12013936 chr3L 12014004 12014027 13 91 3.5 2.5 3.0 3.2 114 chr3L 12013913 intron rols - chr3L 12013970 intron rols - chr3L 12014027 intron rols - chr3L_13_12010001 chr3L_12010001 RAL-818 843 chr3L 12034889 12034913 chr3L 12034964 12034990 4 76 3.5 0.0 1.8 1.4 101 chr3L 12034889 intron rols - chr3L 12034940 intron rols - chr3L 12034990 intron rols - chr3L_4_12030001 chr3L_12030001 RAL-818 844 chr3L 12052707 12052737 chr3L 12052796 12052826 7 89 2.0 2.5 2.2 2.2 119 chr3L 12052707 intron rols - chr3L 12052766 intron rols - chr3L 12052826 intron rols - chr3L_7_12050001 chr3L_12050001 RAL-818 845 chr3L 12089085 12089106 chr3L 12089165 12089186 10 80 3.5 2.5 3.0 2.5 101 chr3L 12089085 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089186 3` UTR CG17154 + chr3L_10_12085001 chr3L_12085001 RAL-818 846 chr3L 12304094 12304111 chr3L 12304170 12304187 6 74 5.0 4.0 4.5 1.1 93 chr3L 12304094 intergenic not near genes chr3L 12304140 intergenic not near genes chr3L 12304187 intergenic not near genes chr3L_6_12300001 chr3L_12300001 RAL-818 847 chr3L 12369544 12369558 chr3L 12369634 12369648 4 90 0.5 1.5 1.0 2.0 104 chr3L 12369544 intron Ncc69 - chr3L 12369596 intron Ncc69 - chr3L 12369648 intron Ncc69 - chr3L_4_12365001 chr3L_12365001 RAL-818 848 chr3L 12412732 12412924 chr3L 12412817 12413006 12 84 1.0 2.0 1.5 4.8 274 chr3L 12412732 intron CG32103 - chr3L 12412869 intron CG32103 - chr3L 12413006 intron CG32103 - chr3L_12_12410001 chr3L_12410001 RAL-818 849 chr3L 12491705 12491711 chr3L 12491788 12491794 4 83 0.0 1.0 0.5 2.7 89 chr3L 12491705 intergenic CG10657 -,CR45682 + chr3L 12491750 intergenic CG10657 -,CR45682 + chr3L 12491794 intergenic CG10657 -,CR45682 + chr3L_4_12490001 chr3L_12490001 RAL-818 850 chr3L 12564004 12564017 chr3L 12564220 12564232 4 214 2.0 4.5 3.2 1.0 228 chr3L 12564004 intron sowah - chr3L 12564118 intron sowah - chr3L 12564232 intron sowah - chr3L_4_12560001 chr3L_12560001 RAL-818 851 chr3L 12647964 12647977 chr3L 12648040 12648053 4 76 2.5 2.5 2.5 1.1 89 chr3L 12647964 5` UTR CR32111 + chr3L 12648008 5` UTR CR32111 + chr3L 12648053 5` UTR CR32111 + chr3L_4_12645001 chr3L_12645001 RAL-818 852 chr3L 12669687 12669720 chr3L 12669792 12669827 9 103 1.5 5.0 3.2 2.1 140 chr3L 12669687 intergenic not near genes chr3L 12669757 intergenic not near genes chr3L 12669827 intergenic not near genes chr3L_9_12665001 chr3L_12665001 RAL-818 853 chr3L 12801980 12802011 chr3L 12802054 12802087 9 74 1.0 0.5 0.8 5.0 107 chr3L 12801980 intron Atg1 - chr3L 12802034 intron Atg1 - chr3L 12802087 intron Atg1 - chr3L_9_12800001 chr3L_12800001 RAL-818 854 chr3L 12802436 12802469 chr3L 12802590 12802623 5 154 1.0 2.0 1.5 2.0 187 chr3L 12802436 intron Atg1 - chr3L 12802530 intron Atg1 - chr3L 12802623 intron Atg1 - chr3L_5_12800001 chr3L_12800001 RAL-818 855 chr3L 12874928 12874955 chr3L 12877220 12877247 jockey 7 2292 2.5 2.0 2.2 2.2 2319 chr3L 12874928 intergenic not near genes chr3L 12876088 intergenic not near genes chr3L 12877247 intergenic not near genes chr3L_7_12875001 chr3L_12875001 RAL-818 856 chr3L 12894800 12894814 chr3L 12894878 12894892 5 77 6.5 6.0 6.2 0.7 92 chr3L 12894800 intergenic CG14118 + chr3L 12894846 intergenic CG14118 + chr3L 12894892 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-818 857 chr3L 12919280 12919303 chr3L 12924753 12924776 Rt1c 10 5469 5.5 3.0 4.2 1.9 5496 chr3L 12919280 intergenic not near genes chr3L 12922028 intergenic not near genes chr3L 12924776 intergenic not near genes chr3L_10_12920001 chr3L_12920001 RAL-818 858 chr3L 12942188 12942206 chr3L 12942282 12942306 4 99 2.0 2.0 2.0 1.3 118 chr3L 12942188 intergenic not near genes chr3L 12942247 intergenic not near genes chr3L 12942306 intergenic not near genes chr3L_4_12940001 chr3L_12940001 RAL-818 859 chr3L 12950104 12950129 chr3L 12950180 12950205 7 75 1.5 2.5 2.0 2.3 101 chr3L 12950104 intergenic not near genes chr3L 12950154 intergenic not near genes chr3L 12950205 intergenic not near genes chr3L_7_12950001 chr3L_12950001 RAL-818 860 chr3L 13004753 13004773 chr3L 13004837 13004839 4 79 4.0 5.0 4.5 0.7 86 chr3L 13004753 intergenic not near genes chr3L 13004796 intergenic not near genes chr3L 13004839 intergenic not near genes chr3L_4_13000001 chr3L_13000001 RAL-818 861 chr3L 13074035 13074067 chr3L 13074168 13074200 8 132 2.0 2.0 2.0 2.7 165 chr3L 13074035 intergenic not near genes chr3L 13074118 intergenic not near genes chr3L 13074200 intergenic not near genes chr3L_8_13070001 chr3L_13070001 RAL-818 862 chr3L 13085061 13085082 chr3L 13085140 13085161 4 79 0.5 1.0 0.8 2.2 100 chr3L 13085061 intergenic not near genes chr3L 13085111 intergenic not near genes chr3L 13085161 intergenic not near genes chr3L_4_13085001 chr3L_13085001 RAL-818 863 chr3L 13198303 13198334 chr3L 13198406 13198437 15 100 3.5 3.5 3.5 3.3 134 chr3L 13198303 intergenic not near genes chr3L 13198370 intergenic not near genes chr3L 13198437 intergenic not near genes chr3L_15_13195001 chr3L_13195001 RAL-818 864 chr3L 13267286 13267307 chr3L 13267398 13267420 7 112 2.0 3.0 2.5 2.0 134 chr3L 13267286 intron caps + chr3L 13267353 intron caps + chr3L 13267420 intron caps + chr3L_7_13265001 chr3L_13265001 RAL-818 865 chr3L 13338292 13338318 chr3L 13338388 13338414 4 95 5.0 7.0 6.0 0.6 122 chr3L 13338292 intergenic not near genes chr3L 13338353 intergenic not near genes chr3L 13338414 intergenic not near genes chr3L_4_13335001 chr3L_13335001 RAL-818 866 chr3L 13525164 13525186 chr3L 13532960 13532981 roo 9 7796 2.5 3.5 3.0 2.2 7817 chr3L 13525164 intergenic not near genes chr3L 13529072 intergenic not near genes chr3L 13532981 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-818 867 chr3L 13804555 13804577 chr3L 13822841 13822863 roo 4 18286 2.5 3.5 3.0 1.0 18308 chr3L 13804555 intergenic not near genes chr3L 13813709 intergenic not near genes chr3L 13822863 intergenic not near genes chr3L_4_13810001 chr3L_13810001 RAL-818 868 chr3L 13862484 13862505 chr3L 13862680 13862712 8 199 5.5 8.5 7.0 1.0 228 chr3L 13862484 intron CG8745 - chr3L 13862598 intron CG8745 - chr3L 13862712 intron CG8745 - chr3L_8_13860001 chr3L_13860001 RAL-818 869 chr3L 13900428 13900441 chr3L 13900709 13900721 4 280 18.0 17.5 17.8 0.2 293 chr3L 13900428 intron dysc - chr3L 13900574 intron dysc - chr3L 13900721 intron dysc - chr3L_4_13900001 chr3L_13900001 RAL-818 870 chr3L 14185157 14185183 chr3L 14185233 14185259 5 76 12.0 12.0 12.0 0.4 102 chr3L 14185157 intergenic not near genes chr3L 14185208 intergenic not near genes chr3L 14185259 intergenic not near genes chr3L_5_14185001 chr3L_14185001 RAL-818 871 chr3L 14235885 14236051 chr3L 14235970 14236188 5 96 6.5 4.0 5.2 0.8 303 chr3L 14235885 5` UTR CG34244 - chr3L 14236036 intergenic CG34244 - chr3L 14236188 intergenic CG34244 -,CG7906 + chr3L_5_14235001 chr3L_14235001 RAL-818 872 chr3L 14282592 14282602 chr3L 14282671 14282682 4 80 12.0 12.0 12.0 0.3 90 chr3L 14282592 intron fz + chr3L 14282637 intron fz + chr3L 14282682 intron fz + chr3L_4_14280001 chr3L_14280001 RAL-818 873 chr3L 14295982 14296013 chr3L 14296467 14296498 roo 13 485 1.5 2.0 1.8 4.6 516 chr3L 14295982 intron fz + chr3L 14296240 intron fz + chr3L 14296498 intron fz + chr3L_13_14295001 chr3L_14295001 RAL-818 874 chr3L 14296518 14296547 chr3L 14296595 14296624 8 76 5.5 5.5 5.5 1.2 106 chr3L 14296518 intron fz + chr3L 14296571 intron fz + chr3L 14296624 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-818 875 chr3L 14312033 14312056 chr3L 14316845 14316858 X-element 5 4809 1.5 2.5 2.0 1.7 4825 chr3L 14312033 exon fz + chr3L 14314446 intron fz + chr3L 14316858 intron fz + chr3L_5_14310001 chr3L_14310001 RAL-818 876 chr3L 14356519 14356533 chr3L 14356599 14356610 8 79 5.5 2.5 4.0 1.6 91 chr3L 14356519 intron fz + chr3L 14356564 intron fz + chr3L 14356610 intron fz + chr3L_8_14355001 chr3L_14355001 RAL-818 877 chr3L 14429439 14429454 chr3L 14429525 14429540 6 86 7.0 6.0 6.5 0.8 101 chr3L 14429439 intron bbg - chr3L 14429490 intron bbg - chr3L 14429540 intron bbg - chr3L_6_14425001 chr3L_14425001 RAL-818 878 chr3L 14546798 14546813 chr3L 14546879 14546894 5 81 0.0 4.5 2.2 1.6 96 chr3L 14546798 intron CG9238 - chr3L 14546846 intron CG9238 - chr3L 14546894 intron CG9238 - chr3L_5_14545001 chr3L_14545001 RAL-818 879 chr3L 14740889 14740919 chr3L 14740978 14741008 4 88 4.5 3.5 4.0 0.8 119 chr3L 14740889 intron ome + chr3L 14740948 intron ome + chr3L 14741008 intron ome + chr3L_4_14740001 chr3L_14740001 RAL-818 880 chr3L 14912188 14912216 chr3L 14912270 14912297 7 82 3.5 2.5 3.0 1.8 109 chr3L 14912188 intron DCX-EMAP + chr3L 14912242 intron DCX-EMAP + chr3L 14912297 intron DCX-EMAP + chr3L_7_14910001 chr3L_14910001 RAL-818 881 chr3L 14958427 14958458 chr3L 14958510 14958540 7 80 4.0 7.5 5.8 1.0 113 chr3L 14958427 intergenic not near genes chr3L 14958484 intergenic not near genes chr3L 14958540 intergenic not near genes chr3L_7_14955001 chr3L_14955001 RAL-818 882 chr3L 15053429 15053448 chr3L 15053767 15053787 4 339 3.0 3.5 3.2 1.0 358 chr3L 15053429 intron Sytbeta - chr3L 15053608 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053787 intron,3` UTR Sytbeta -,CG18649 - chr3L_4_15050001 chr3L_15050001 RAL-818 883 chr3L 15085049 15085074 chr3L 15086214 15086240 1360 5 1166 0.5 0.5 0.5 3.3 1191 chr3L 15085049 intron cp309 - chr3L 15085644 intron cp309 - chr3L 15086240 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-818 884 chr3L 15099229 15099242 chr3L 15099732 15099745 4 503 27.0 14.5 20.8 0.2 516 chr3L 15099229 intron,intron CTPsyn +,CR43973 - chr3L 15099487 intron,3` UTR CTPsyn +,CR43973 - chr3L 15099745 intron CTPsyn + chr3L_4_15095001 chr3L_15095001 RAL-818 885 chr3L 15143533 15143551 chr3L 15143630 15143648 6 97 15.5 10.5 13.0 0.4 115 chr3L 15143533 exon CG32147 - chr3L 15143590 exon CG32147 - chr3L 15143648 exon CG32147 - chr3L_6_15140001 chr3L_15140001 RAL-818 886 chr3L 15224452 15224479 chr3L 15224545 15224570 5 92 5.0 2.5 3.8 1.0 118 chr3L 15224452 intergenic not near genes chr3L 15224511 intergenic not near genes chr3L 15224570 intergenic not near genes chr3L_5_15220001 chr3L_15220001 RAL-818 887 chr3L 15423764 15423782 chr3L 15426608 15426626 opus 5 2844 1.5 2.0 1.8 1.8 2862 chr3L 15423764 intergenic not near genes chr3L 15425195 intergenic not near genes chr3L 15426626 intergenic not near genes chr3L_5_15425001 chr3L_15425001 RAL-818 888 chr3L 15466039 15466131 chr3L 15466121 15466226 6 89 0.0 0.0 0.0 6.0 187 chr3L 15466039 intergenic not near genes chr3L 15466132 intergenic not near genes chr3L 15466226 intergenic not near genes chr3L_6_15465001 chr3L_15465001 RAL-818 889 chr3L 15633187 15633199 chr3L 15633267 15633279 4 80 1.0 1.0 1.0 2.0 92 chr3L 15633187 intron comm3 - chr3L 15633233 intron comm3 - chr3L 15633279 intron comm3 - chr3L_4_15630001 chr3L_15630001 RAL-818 890 chr3L 15756883 15756913 chr3L 15756966 15756995 5 81 7.5 6.5 7.0 0.6 112 chr3L 15756883 intergenic not near genes chr3L 15756939 intergenic not near genes chr3L 15756995 intergenic not near genes chr3L_5_15755001 chr3L_15755001 RAL-818 891 chr3L 15777678 15777697 chr3L 15777810 15777829 6 132 3.5 6.5 5.0 1.0 151 chr3L 15777678 intergenic not near genes chr3L 15777754 intergenic not near genes chr3L 15777829 intergenic not near genes chr3L_6_15775001 chr3L_15775001 RAL-818 892 chr3L 15834994 15835009 chr3L 15835149 15835158 6 152 7.0 9.5 8.2 0.7 164 chr3L 15834994 intron CG18081 - chr3L 15835076 intron CG18081 - chr3L 15835158 intron CG18081 - chr3L_6_15835001 chr3L_15835001 RAL-818 893 chr3L 15891207 15891233 chr3L 15891323 15891349 5 115 3.0 6.5 4.8 0.9 142 chr3L 15891207 intron pHCl - chr3L 15891278 intron pHCl - chr3L 15891349 intron pHCl - chr3L_5_15890001 chr3L_15890001 RAL-818 894 chr3L 15929212 15929220 chr3L 15938359 15938367 roo 4 9147 1.0 1.5 1.2 1.8 9155 chr3L 15929212 intron Pka-C3 - chr3L 15933790 intron Pka-C3 - chr3L 15938367 intron Pka-C3 - chr3L_4_15930001 chr3L_15930001 RAL-818 895 chr3L 16070744 16070762 chr3L 16070821 16070839 5 77 0.5 2.5 1.5 2.0 95 chr3L 16070744 intron Mbs + chr3L 16070792 intron Mbs + chr3L 16070839 exon Mbs + chr3L_5_16070001 chr3L_16070001 RAL-818 896 chr3L 16158811 16158825 chr3L 16158893 16158910 4 84 5.0 4.0 4.5 0.7 99 chr3L 16158811 intron CG5151 - chr3L 16158860 intron CG5151 - chr3L 16158910 intron CG5151 - chr3L_4_16155001 chr3L_16155001 RAL-818 897 chr3L 16162595 16162626 chr3L 16162679 16162710 8 82 12.0 8.5 10.2 0.7 115 chr3L 16162595 intron CG5151 - chr3L 16162652 intron CG5151 - chr3L 16162710 intron CG5151 - chr3L_8_16160001 chr3L_16160001 RAL-818 898 chr3L 16184108 16184140 chr3L 16188925 16188946 X-element 6 4814 3.5 3.0 3.2 1.4 4838 chr3L 16184108 intergenic not near genes chr3L 16186527 intergenic not near genes chr3L 16188946 intergenic not near genes chr3L_6_16185001 chr3L_16185001 RAL-818 899 chr3L 16212821 16212842 chr3L 16212910 16212933 4 90 1.5 0.5 1.0 2.0 112 chr3L 16212821 intergenic CG13073 - chr3L 16212877 intergenic CG13073 - chr3L 16212933 intergenic CG13073 - chr3L_4_16210001 chr3L_16210001 RAL-818 900 chr3L 16279086 16279105 chr3L 16279167 16279186 8 81 1.5 1.5 1.5 3.2 100 chr3L 16279086 intron CG13050 - chr3L 16279136 intron CG13050 - chr3L 16279186 intron CG13050 - chr3L_8_16275001 chr3L_16275001 RAL-818 901 chr3L 16340265 16340290 chr3L 16340389 16340414 5 123 11.0 11.5 11.2 0.4 149 chr3L 16340265 intron CG4998 + chr3L 16340340 intron CG4998 + chr3L 16340414 intron CG4998 + chr3L_5_16340001 chr3L_16340001 RAL-818 902 chr3L 16493978 16494013 chr3L 16494494 16494522 jockey 9 516 4.5 2.5 3.5 2.0 544 chr3L 16493978 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494250 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494522 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_9_16490001 chr3L_16490001 RAL-818 903 chr3L 16506665 16506693 chr3L 16506858 16506869 5 188 9.0 7.5 8.2 0.5 204 chr3L 16506665 intron CG43373 - chr3L 16506767 intron CG43373 - chr3L 16506869 intron CG43373 - chr3L_5_16505001 chr3L_16505001 RAL-818 904 chr3L 16533570 16533586 chr3L 16533681 16533697 4 111 2.0 2.0 2.0 1.3 127 chr3L 16533570 intron CG43373 - chr3L 16533634 intron CG43373 - chr3L 16533697 intron CG43373 - chr3L_4_16530001 chr3L_16530001 RAL-818 905 chr3L 16534170 16534177 chr3L 16534246 16534253 4 76 3.5 4.5 4.0 0.8 83 chr3L 16534170 intron CG43373 - chr3L 16534212 intron CG43373 - chr3L 16534253 intron CG43373 - chr3L_4_16530001 chr3L_16530001 RAL-818 906 chr3L 16540055 16540085 chr3L 16540143 16540173 6 88 0.0 4.0 2.0 2.0 118 chr3L 16540055 intron CG43373 - chr3L 16540114 intron CG43373 - chr3L 16540173 intron CG43373 - chr3L_6_16540001 chr3L_16540001 RAL-818 907 chr3L 16563234 16563252 chr3L 16563315 16563333 8 81 2.0 0.0 1.0 4.0 99 chr3L 16563234 intergenic Mipp1 - chr3L 16563284 intergenic Mipp1 - chr3L 16563333 intergenic Mipp1 - chr3L_8_16560001 chr3L_16560001 RAL-818 908 chr3L 16610684 16610718 chr3L 16610769 16610803 4 85 7.0 8.5 7.8 0.5 119 chr3L 16610684 3` UTR Su(P) - chr3L 16610744 exon Su(P) - chr3L 16610803 exon Su(P) - chr3L_4_16610001 chr3L_16610001 RAL-818 909 chr3L 16616511 16616538 chr3L 16621839 16621866 297 6 5328 1.5 2.5 2.0 2.0 5355 chr3L 16616511 3` UTR Abl - chr3L 16619188 3` UTR Abl - chr3L 16621866 3` UTR Abl - chr3L_6_16615001 chr3L_16615001 RAL-818 910 chr3L 16659110 16659133 chr3L 16659181 16659211 8 76 2.5 4.0 3.2 1.9 101 chr3L 16659110 intron Baldspot - chr3L 16659160 intron Baldspot - chr3L 16659211 intron Baldspot - chr3L_8_16655001 chr3L_16655001 RAL-818 911 chr3L 16817878 16817907 chr3L 16818018 16818047 5 140 12.5 11.0 11.8 0.4 169 chr3L 16817878 intron,intron nudC +,CG13024 - chr3L 16817962 intron,intron nudC +,CG13024 - chr3L 16818047 intron,intron nudC +,CG13024 - chr3L_5_16815001 chr3L_16815001 RAL-818 912 chr3L 16845025 16845043 chr3L 16845138 16845156 4 113 3.5 1.0 2.2 1.2 131 chr3L 16845025 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845156 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-818 913 chr3L 16861028 16861051 chr3L 16861129 16861153 7 102 14.0 12.5 13.2 0.5 125 chr3L 16861028 intron,exon Rh4 -,CG13029 + chr3L 16861090 intron,intron Rh4 -,CG13029 + chr3L 16861153 intron,exon Rh4 -,CG13029 + chr3L_7_16860001 chr3L_16860001 RAL-818 914 chr3L 16941401 16941434 chr3L 16941502 16941535 4 101 0.5 0.0 0.2 3.3 134 chr3L 16941401 intron Cpr73D - chr3L 16941468 intron Cpr73D - chr3L 16941535 intron Cpr73D - chr3L_4_16940001 chr3L_16940001 RAL-818 915 chr3L 16945726 16945758 chr3L 16954879 16954911 roo 15 9151 2.5 3.0 2.8 3.9 9185 chr3L 16945726 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954911 5` UTR Nc73EF + chr3L_15_16950001 chr3L_16950001 RAL-818 916 chr3L 17149163 17149184 chr3L 17149244 17149265 5 80 3.5 4.0 3.8 1.0 102 chr3L 17149163 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149265 intron Rbp6 - chr3L_5_17145001 chr3L_17145001 RAL-818 917 chr3L 17344630 17344652 chr3L 17344713 17344735 8 83 3.5 3.5 3.5 1.8 105 chr3L 17344630 exon brv2 - chr3L 17344682 5` UTR brv2 - chr3L 17344735 intergenic brv2 -,Mip - chr3L_8_17340001 chr3L_17340001 RAL-818 918 chr3L 17404861 17404886 chr3L 17404972 17404997 6 111 3.5 8.0 5.8 0.9 136 chr3L 17404861 intron blot - chr3L 17404929 intron blot - chr3L 17404997 intron blot - chr3L_6_17400001 chr3L_17400001 RAL-818 919 chr3L 17485387 17485404 chr3L 17485479 17485496 4 92 5.5 12.5 9.0 0.4 109 chr3L 17485387 intron CG6333 - chr3L 17485442 intron CG6333 - chr3L 17485496 intron CG6333 - chr3L_4_17485001 chr3L_17485001 RAL-818 920 chr3L 17516987 17517008 chr3L 17524540 17524565 412 12 7554 3.0 3.0 3.0 3.0 7578 chr3L 17516987 intron CG7564 + chr3L 17520776 intron CG7564 + chr3L 17524565 3` UTR CG7564 + chr3L_12_17520001 chr3L_17520001 RAL-818 921 chr3L 17789849 17789873 chr3L 17789925 17789948 4 76 0.0 1.0 0.5 2.7 99 chr3L 17789849 intergenic not near genes chr3L 17789898 intergenic not near genes chr3L 17789948 intergenic not near genes chr3L_4_17785001 chr3L_17785001 RAL-818 922 chr3L 17790460 17790627 chr3L 17790597 17790891 6 182 1.5 5.5 3.5 1.3 431 chr3L 17790460 intergenic not near genes chr3L 17790676 intergenic CG42815 - chr3L 17790891 intergenic CG42815 - chr3L_6_17790001 chr3L_17790001 RAL-818 923 chr3L 17896633 17896642 chr3L 17896710 17896719 4 75 6.5 10.0 8.2 0.4 86 chr3L 17896633 intergenic not near genes chr3L 17896676 intergenic not near genes chr3L 17896719 intergenic not near genes chr3L_4_17895001 chr3L_17895001 RAL-818 924 chr3L 17918386 17918401 chr3L 17921189 17921204 opus 6 2804 2.0 1.5 1.8 2.1 2818 chr3L 17918386 intergenic not near genes chr3L 17919795 intergenic not near genes chr3L 17921204 intergenic not near genes chr3L_6_17915001 chr3L_17915001 RAL-818 925 chr3L 17968145 17968167 chr3L 17968226 17968248 6 81 2.0 2.0 2.0 2.0 103 chr3L 17968145 intron Eip75B - chr3L 17968196 intron Eip75B - chr3L 17968248 intron Eip75B - chr3L_6_17965001 chr3L_17965001 RAL-818 926 chr3L 18004071 18004081 chr3L 18004148 18004156 4 76 10.5 9.5 10.0 0.4 85 chr3L 18004071 intron Eip75B - chr3L 18004114 intron Eip75B - chr3L 18004156 intron Eip75B - chr3L_4_18000001 chr3L_18000001 RAL-818 927 chr3L 18018223 18018238 chr3L 18018304 18018319 5 81 8.5 8.0 8.2 0.5 96 chr3L 18018223 intron Eip75B - chr3L 18018271 intron Eip75B - chr3L 18018319 intron Eip75B - chr3L_5_18015001 chr3L_18015001 RAL-818 928 chr3L 18047710 18047729 chr3L 18056767 18056786 roo 4 9057 0.0 0.5 0.2 3.3 9076 chr3L 18047710 intron Eip75B - chr3L 18052248 intron Eip75B - chr3L 18056786 intron Eip75B - chr3L_4_18050001 chr3L_18050001 RAL-818 929 chr3L 18066836 18066860 chr3L 18066962 18066986 10 126 6.5 2.0 4.2 1.9 150 chr3L 18066836 intergenic not near genes chr3L 18066911 intergenic not near genes chr3L 18066986 intergenic not near genes chr3L_10_18065001 chr3L_18065001 RAL-818 930 chr3L 18092787 18092797 chr3L 18092902 18092911 5 115 5.5 3.5 4.5 0.9 124 chr3L 18092787 intron CG13698 - chr3L 18092849 intron CG13698 - chr3L 18092911 intron CG13698 - chr3L_5_18090001 chr3L_18090001 RAL-818 931 chr3L 18106256 18106270 chr3L 18106375 18106389 4 119 6.5 4.0 5.2 0.6 133 chr3L 18106256 intergenic CG13698 -,mRpS26 + chr3L 18106322 intergenic CG13698 -,mRpS26 + chr3L 18106389 intergenic mRpS26 +,CG13698 - chr3L_4_18105001 chr3L_18105001 RAL-818 932 chr3L 18138228 18138260 chr3L 18138314 18138345 9 85 0.5 2.0 1.2 4.1 117 chr3L 18138228 intergenic not near genes chr3L 18138286 intergenic not near genes chr3L 18138345 intergenic not near genes chr3L_9_18135001 chr3L_18135001 RAL-818 933 chr3L 18150317 18150335 chr3L 18150414 18150431 4 96 2.5 2.5 2.5 1.1 114 chr3L 18150317 intron CG7330 + chr3L 18150374 intron CG7330 + chr3L 18150431 intron CG7330 + chr3L_4_18150001 chr3L_18150001 RAL-818 934 chr3L 18246965 18246983 chr3L 18247044 18247062 5 79 11.5 8.5 10.0 0.5 97 chr3L 18246965 intergenic not near genes chr3L 18247014 intergenic not near genes chr3L 18247062 intergenic not near genes chr3L_5_18245001 chr3L_18245001 RAL-818 935 chr3L 18248952 18248988 chr3L 18249050 18249086 11 98 0.0 3.0 1.5 4.4 134 chr3L 18248952 intergenic not near genes chr3L 18249019 intergenic not near genes chr3L 18249086 intergenic not near genes chr3L_11_18245001 chr3L_18245001 RAL-818 936 chr3L 18408735 18408758 chr3L 18408821 18408841 6 85 0.5 2.5 1.5 2.4 106 chr3L 18408735 intergenic not near genes chr3L 18408788 intergenic not near genes chr3L 18408841 intergenic not near genes chr3L_6_18405001 chr3L_18405001 RAL-818 937 chr3L 18436063 18436095 chr3L 18436161 18436193 4 98 0.0 1.0 0.5 2.7 130 chr3L 18436063 intergenic not near genes chr3L 18436128 intergenic not near genes chr3L 18436193 intergenic not near genes chr3L_4_18435001 chr3L_18435001 RAL-818 938 chr3L 18456273 18456300 chr3L 18456360 18456388 5 88 4.0 2.0 3.0 1.2 115 chr3L 18456273 intergenic CR44670 - chr3L 18456330 intergenic CR44670 - chr3L 18456388 intergenic CR44670 - chr3L_5_18455001 chr3L_18455001 RAL-818 939 chr3L 18528628 18528654 chr3L 18537789 18537815 roo 5 9161 2.0 2.0 2.0 1.7 9187 chr3L 18528628 intergenic not near genes chr3L 18533222 intergenic not near genes chr3L 18537815 intergenic not near genes chr3L_5_18530001 chr3L_18530001 RAL-818 940 chr3L 18606752 18606778 chr3L 18606950 18606976 5 197 4.5 10.0 7.2 0.6 224 chr3L 18606752 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606864 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L 18606976 intron,intron,exon CG13380 -,CG4174 -,CG18233 + chr3L_5_18605001 chr3L_18605001 RAL-818 941 chr3L 18656189 18656215 chr3L 18656274 18656300 7 84 11.0 8.5 9.8 0.6 111 chr3L 18656189 intron MYPT-75D + chr3L 18656244 intron MYPT-75D + chr3L 18656300 intron MYPT-75D + chr3L_7_18655001 chr3L_18655001 RAL-818 942 chr3L 18721770 18721806 chr3L 18721861 18721897 14 90 2.5 1.0 1.8 5.0 127 chr3L 18721770 intergenic CG12477 - chr3L 18721834 intergenic CG12477 - chr3L 18721897 3` UTR CG12477 - chr3L_14_18720001 chr3L_18720001 RAL-818 943 chr3L 18725278 18725295 chr3L 18725576 18725600 5 303 6.5 6.0 6.2 0.7 322 chr3L 18725278 intergenic not near genes chr3L 18725439 intergenic not near genes chr3L 18725600 intergenic not near genes chr3L_5_18725001 chr3L_18725001 RAL-818 944 chr3L 18772408 18772437 chr3L 18781088 18781116 roo 12 8679 4.0 3.0 3.5 2.7 8708 chr3L 18772408 intron ftz-f1 - chr3L 18776762 intron ftz-f1 - chr3L 18781116 intron ftz-f1 - chr3L_12_18775001 chr3L_18775001 RAL-818 945 chr3L 18933104 18933127 chr3L 18933189 18933212 4 85 5.0 6.0 5.5 0.6 108 chr3L 18933104 intron CG32204 - chr3L 18933158 intron CG32204 - chr3L 18933212 intron CG32204 - chr3L_4_18930001 chr3L_18930001 RAL-818 946 chr3L 18957295 18957309 chr3L 18957376 18957390 4 81 10.0 10.5 10.2 0.4 95 chr3L 18957295 intergenic not near genes chr3L 18957342 intergenic not near genes chr3L 18957390 intergenic not near genes chr3L_4_18955001 chr3L_18955001 RAL-818 947 chr3L 18969549 18969562 chr3L 18969625 18969638 4 76 6.5 4.5 5.5 0.6 89 chr3L 18969549 intergenic not near genes chr3L 18969594 intergenic not near genes chr3L 18969638 intergenic not near genes chr3L_4_18965001 chr3L_18965001 RAL-818 948 chr3L 18983552 18983579 chr3L 18983852 18983873 9 297 5.5 7.0 6.2 1.2 321 chr3L 18983552 intergenic not near genes chr3L 18983712 intergenic not near genes chr3L 18983873 intergenic not near genes chr3L_9_18980001 chr3L_18980001 RAL-818 949 chr3L 19008834 19008870 chr3L 19009175 19009208 jockey 7 338 1.0 4.5 2.8 1.8 374 chr3L 19008834 intron nkd - chr3L 19009021 intron nkd - chr3L 19009208 intron nkd - chr3L_7_19005001 chr3L_19005001 RAL-818 950 chr3L 19074746 19074773 chr3L 19075187 19075215 8 442 5.0 3.0 4.0 1.6 469 chr3L 19074746 intron Mkp3 - chr3L 19074980 intron Mkp3 - chr3L 19075215 intron Mkp3 - chr3L_8_19070001 chr3L_19070001 RAL-818 951 chr3L 19115643 19115665 chr3L 19115818 19115845 BS 5 178 8.5 3.0 5.8 0.7 202 chr3L 19115643 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115845 intron CG14082 - chr3L_5_19115001 chr3L_19115001 RAL-818 952 chr3L 19117048 19117069 chr3L 19124489 19124511 mdg1 7 7444 4.0 3.5 3.8 1.5 7463 chr3L 19117048 intron CG14082 - chr3L 19120780 intron CG14082 - chr3L 19124511 intron CG14082 - chr3L_7_19120001 chr3L_19120001 RAL-818 953 chr3L 19208057 19208092 chr3L 19209431 19209462 Doc 12 1372 2.0 3.0 2.5 3.4 1405 chr3L 19208057 intron fz2 - chr3L 19208760 intron fz2 - chr3L 19209462 intron fz2 - chr3L_12_19205001 chr3L_19205001 RAL-818 954 chr3L 19269817 19269843 chr3L 19270021 19270047 8 203 10.0 15.5 12.8 0.6 230 chr3L 19269817 intron,exon CG14085 +,CG14088 - chr3L 19269932 intron,exon CG14085 +,CG14088 - chr3L 19270047 intron,exon CG14085 +,CG14088 - chr3L_8_19265001 chr3L_19265001 RAL-818 955 chr3L 19426747 19426778 chr3L 19426824 19426856 6 71 4.5 5.0 4.8 1.0 109 chr3L 19426747 intergenic not near genes chr3L 19426802 intergenic not near genes chr3L 19426856 intergenic not near genes chr3L_6_19425001 chr3L_19425001 RAL-818 956 chr3L 19430407 19430433 chr3L 19430485 19430505 5 77 0.0 2.0 1.0 2.5 98 chr3L 19430407 intergenic not near genes chr3L 19430456 intergenic not near genes chr3L 19430505 intergenic not near genes chr3L_5_19430001 chr3L_19430001 RAL-818 957 chr3L 19676083 19676107 chr3L 19676162 19676186 7 79 6.0 3.0 4.5 1.3 103 chr3L 19676083 intergenic not near genes chr3L 19676134 intergenic not near genes chr3L 19676186 intergenic not near genes chr3L_7_19675001 chr3L_19675001 RAL-818 958 chr3L 19703848 19703879 chr3L 19704002 19704032 7 154 4.0 7.0 5.5 1.1 184 chr3L 19703848 intron serp - chr3L 19703940 intron serp - chr3L 19704032 intron serp - chr3L_7_19700001 chr3L_19700001 RAL-818 959 chr3L 19861820 19861843 chr3L 19863608 19863631 S-element 8 1788 4.0 1.5 2.8 2.1 1811 chr3L 19861820 5` UTR CR45433 + chr3L 19862726 intergenic not near genes chr3L 19863631 intergenic not near genes chr3L_8_19860001 chr3L_19860001 RAL-818 960 chr3L 19925392 19925413 chr3L 19925525 19925535 5 131 4.5 4.0 4.2 1.0 143 chr3L 19925392 intron Grasp65 + chr3L 19925464 intron Grasp65 + chr3L 19925535 intron Grasp65 + chr3L_5_19925001 chr3L_19925001 RAL-818 961 chr3L 20096086 20096105 chr3L 20096188 20096207 5 101 2.0 0.0 1.0 2.5 121 chr3L 20096086 intergenic not near genes chr3L 20096146 intergenic not near genes chr3L 20096207 intergenic not near genes chr3L_5_20095001 chr3L_20095001 RAL-818 962 chr3L 20143080 20143114 chr3L 20143160 20143193 7 80 0.5 5.0 2.8 1.8 113 chr3L 20143080 intergenic not near genes chr3L 20143136 intergenic not near genes chr3L 20143193 intergenic not near genes chr3L_7_20140001 chr3L_20140001 RAL-818 963 chr3L 20148287 20148317 chr3L 20148372 20148407 10 89 2.0 2.0 2.0 3.3 120 chr3L 20148287 intergenic not near genes chr3L 20148347 intergenic not near genes chr3L 20148407 intergenic not near genes chr3L_10_20145001 chr3L_20145001 RAL-818 964 chr3L 20444121 20444149 chr3L 20444208 20444236 6 86 1.5 3.0 2.2 1.9 115 chr3L 20444121 intron CG5910 + chr3L 20444178 intron CG5910 + chr3L 20444236 intron CG5910 + chr3L_6_20440001 chr3L_20440001 RAL-818 965 chr3L 20476752 20476770 chr3L 20484351 20484369 springer 7 7599 2.0 4.5 3.2 1.7 7617 chr3L 20476752 3` UTR isoQC + chr3L 20480560 intergenic not near genes chr3L 20484369 3` UTR ZnT77C - chr3L_7_20480001 chr3L_20480001 RAL-818 966 chr3L 20487661 20487670 chr3L 20488112 20488121 INE-1 4 451 8.5 1.0 4.8 0.7 460 chr3L 20487661 intron ZnT77C - chr3L 20487891 intron ZnT77C - chr3L 20488121 intron ZnT77C - chr3L_4_20485001 chr3L_20485001 RAL-818 967 chr3L 20563796 20563816 chr3L 20563876 20563901 5 81 4.0 4.0 4.0 1.0 105 chr3L 20563796 intergenic not near genes chr3L 20563848 intergenic not near genes chr3L 20563901 intergenic not near genes chr3L_5_20560001 chr3L_20560001 RAL-818 968 chr3L 20603429 20603456 chr3L 20603520 20603547 6 90 3.0 2.0 2.5 1.7 118 chr3L 20603429 intron knrl - chr3L 20603488 intron knrl - chr3L 20603547 intron knrl - chr3L_6_20600001 chr3L_20600001 RAL-818 969 chr3L 20624620 20624648 chr3L 20624706 20624714 5 82 10.0 8.0 9.0 0.5 94 chr3L 20624620 intergenic CR44684 - chr3L 20624667 intergenic CR44684 - chr3L 20624714 intergenic CR44684 - chr3L_5_20620001 chr3L_20620001 RAL-818 970 chr3L 20733815 20733827 chr3L 20733901 20733913 4 86 5.0 9.0 7.0 0.5 98 chr3L 20733815 intron CG13252 + chr3L 20733864 intron CG13252 + chr3L 20733913 intron CG13252 + chr3L_4_20730001 chr3L_20730001 RAL-818 971 chr3L 20821288 20821311 chr3L 20824899 20824920 NOF 7 3610 2.0 1.0 1.5 2.8 3632 chr3L 20821288 intron Pka-R1 + chr3L 20823104 intron Pka-R1 + chr3L 20824920 intron Pka-R1 + chr3L_7_20820001 chr3L_20820001 RAL-818 972 chr3L 20849276 20849301 chr3L 20849355 20849380 4 79 1.0 3.0 2.0 1.3 104 chr3L 20849276 intron CG32432 - chr3L 20849328 intron CG32432 - chr3L 20849380 intron CG32432 - chr3L_4_20845001 chr3L_20845001 RAL-818 973 chr3L 20863608 20863624 chr3L 20863799 20863815 5 190 3.0 4.5 3.8 1.0 207 chr3L 20863608 intron CG32432 - chr3L 20863712 intron CG32432 - chr3L 20863815 intron CG32432 - chr3L_5_20860001 chr3L_20860001 RAL-818 974 chr3L 20864657 20864673 chr3L 20864738 20864754 4 80 0.0 3.5 1.8 1.4 97 chr3L 20864657 intron CG32432 - chr3L 20864706 intron CG32432 - chr3L 20864754 intron CG32432 - chr3L_4_20860001 chr3L_20860001 RAL-818 975 chr3L 20917093 20917114 chr3L 20917170 20917191 9 76 3.5 5.0 4.2 1.7 98 chr3L 20917093 intergenic not near genes chr3L 20917142 intergenic not near genes chr3L 20917191 intergenic not near genes chr3L_9_20915001 chr3L_20915001 RAL-818 976 chr3L 20964614 20964648 chr3L 20964691 20964725 9 77 7.5 8.0 7.8 1.0 111 chr3L 20964614 3` UTR CG12983 - chr3L 20964670 3` UTR CG12983 - chr3L 20964725 3` UTR CG12983 - chr3L_9_20960001 chr3L_20960001 RAL-818 977 chr3L 20977411 20977448 chr3L 20977537 20977574 7 126 8.0 4.5 6.2 1.0 163 chr3L 20977411 intergenic not near genes chr3L 20977492 intergenic not near genes chr3L 20977574 intergenic not near genes chr3L_7_20975001 chr3L_20975001 RAL-818 978 chr3L 21014918 21014947 chr3L 21023399 21023412 Tirant 7 8475 3.5 3.5 3.5 1.6 8494 chr3L 21014918 intron skd - chr3L 21019165 intron skd - chr3L 21023412 intron skd - chr3L_7_21015001 chr3L_21015001 RAL-818 979 chr3L 21125855 21125878 chr3L 21125927 21125955 8 77 7.0 7.5 7.2 1.0 100 chr3L 21125855 intron ko - chr3L 21125905 intron ko - chr3L 21125955 intron ko - chr3L_8_21125001 chr3L_21125001 RAL-818 980 chr3L 21266330 21266360 chr3L 21266410 21266440 9 79 2.5 2.5 2.5 2.6 110 chr3L 21266330 3` UTR Eip78C + chr3L 21266385 3` UTR Eip78C + chr3L 21266440 3` UTR Eip78C + chr3L_9_21265001 chr3L_21265001 RAL-818 981 chr3L 21303713 21303740 chr3L 21303800 21303827 7 87 3.5 4.0 3.8 1.5 114 chr3L 21303713 intron CG11309 - chr3L 21303770 intron CG11309 - chr3L 21303827 intron CG11309 - chr3L_7_21300001 chr3L_21300001 RAL-818 982 chr3L 21361727 21361749 chr3L 21362680 21362703 G2 5 953 5.5 2.0 3.8 1.0 976 chr3L 21361727 intergenic CG32440 + chr3L 21362215 intergenic not near genes chr3L 21362703 intergenic not near genes chr3L_5_21360001 chr3L_21360001 RAL-818 983 chr3L 21415140 21415165 chr3L 21415223 21415248 10 83 5.0 6.5 5.8 1.5 108 chr3L 21415140 intron rgn + chr3L 21415194 intron rgn + chr3L 21415248 intron rgn + chr3L_10_21415001 chr3L_21415001 RAL-818 984 chr3L 21427849 21427882 chr3L 21427942 21427974 8 92 7.0 6.0 6.5 1.1 125 chr3L 21427849 intron,5` UTR barc -,CG33288 + chr3L 21427912 intron,5` UTR barc -,CG33288 + chr3L 21427974 intron,5` UTR barc -,CG33288 + chr3L_8_21425001 chr3L_21425001 RAL-818 985 chr3L 21498832 21498847 chr3L 21500468 21500481 1360 7 1634 7.0 2.5 4.8 1.2 1649 chr3L 21498832 intron Glg1 - chr3L 21499656 intron Glg1 - chr3L 21500481 intron Glg1 - chr3L_7_21495001 chr3L_21495001 RAL-818 986 chr3L 21637327 21637351 chr3L 21637413 21637438 10 87 2.5 2.0 2.2 3.1 111 chr3L 21637327 intron CG32444 + chr3L 21637382 intron CG32444 + chr3L 21637438 intron CG32444 + chr3L_10_21635001 chr3L_21635001 RAL-818 987 chr3L 21739343 21739366 chr3L 21739435 21739458 7 91 6.5 4.5 5.5 1.1 115 chr3L 21739343 intergenic CG14566 - chr3L 21739400 intergenic CG14566 - chr3L 21739458 intergenic CG14566 - chr3L_7_21735001 chr3L_21735001 RAL-818 988 chr3L 21749319 21749326 chr3L 21754479 21754484 Doc 5 5159 7.0 4.5 5.8 0.7 5165 chr3L 21749319 intron Syn1 - chr3L 21751902 intron Syn1 - chr3L 21754484 intron Syn1 - chr3L_5_21750001 chr3L_21750001 RAL-818 989 chr3L 21766923 21766948 chr3L 21767204 21767228 8 280 6.5 7.5 7.0 1.0 305 chr3L 21766923 intron Syn1 - chr3L 21767076 intron Syn1 - chr3L 21767228 intron Syn1 - chr3L_8_21765001 chr3L_21765001 RAL-818 990 chr3L 21776683 21776699 chr3L 21776770 21776786 5 87 0.5 7.0 3.8 1.0 103 chr3L 21776683 intron,intron CG42689 +,CG42552 + chr3L 21776734 intron,intron CG42689 +,CG42552 + chr3L 21776786 intron,intron CG42689 +,CG42552 + chr3L_5_21775001 chr3L_21775001 RAL-818 991 chr3L 21849498 21849531 chr3L 21849580 21849613 9 82 5.0 2.0 3.5 2.0 115 chr3L 21849498 intron mub + chr3L 21849556 intron mub + chr3L 21849613 intron mub + chr3L_9_21845001 chr3L_21845001 RAL-818 992 chr3L 21886393 21886419 chr3L 21886475 21886502 4 83 12.5 12.0 12.2 0.3 109 chr3L 21886393 intron,intron mub +,CR43878 - chr3L 21886448 intron,intron mub +,CR43878 - chr3L 21886502 intron,intron mub +,CR43878 - chr3L_4_21885001 chr3L_21885001 RAL-818 993 chr3L 21905492 21905512 chr3L 21905594 21905610 4 101 7.0 8.5 7.8 0.5 118 chr3L 21905492 intron mub + chr3L 21905551 intron mub + chr3L 21905610 intron mub + chr3L_4_21905001 chr3L_21905001 RAL-818 994 chr3L 21950332 21950356 chr3L 21950409 21950433 4 76 14.5 16.5 15.5 0.2 101 chr3L 21950332 exon CG7448 + chr3L 21950382 exon CG7448 + chr3L 21950433 intron CG7448 + chr3L_4_21950001 chr3L_21950001 RAL-818 995 chr3L 22099687 22099706 chr3L 22105873 22105892 3S18 7 6186 1.5 2.0 1.8 2.5 6205 chr3L 22099687 intergenic not near genes chr3L 22102790 intergenic not near genes chr3L 22105892 intergenic not near genes chr3L_7_22100001 chr3L_22100001 RAL-818 996 chr3L 22130499 22130522 chr3L 22130645 22130668 4 146 1.5 1.0 1.2 1.8 169 chr3L 22130499 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130668 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-818 997 chr3L 22395595 22395627 chr3L 22395678 22395710 6 82 4.5 5.5 5.0 1.0 115 chr3L 22395595 intron Ten-m - chr3L 22395652 intron Ten-m - chr3L 22395710 intron Ten-m - chr3L_6_22395001 chr3L_22395001 RAL-818 998 chr3L 22514771 22514800 chr3L 22514938 22514967 4 167 11.0 8.0 9.5 0.4 196 chr3L 22514771 intergenic not near genes chr3L 22514869 intergenic not near genes chr3L 22514967 intergenic not near genes chr3L_4_22510001 chr3L_22510001 RAL-818 999 chr3L 22522703 22522724 chr3L 22522780 22522801 4 74 7.5 8.5 8.0 0.4 98 chr3L 22522703 intergenic not near genes chr3L 22522752 intergenic not near genes chr3L 22522801 intergenic not near genes chr3L_4_22520001 chr3L_22520001 RAL-818 1000 chr3L 22555793 22555802 chr3L 22563239 22563272 blood 5 7465 2.0 1.5 1.8 1.8 7479 chr3L 22555793 intergenic not near genes chr3L 22559532 intergenic not near genes chr3L 22563272 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-818 1001 chr3L 22577615 22577634 chr3L 22582402 22582422 Doc 4 4788 1.5 1.5 1.5 1.6 4807 chr3L 22577615 intergenic not near genes chr3L 22580018 intergenic not near genes chr3L 22582422 3` UTR CG14459 - chr3L_4_22580001 chr3L_22580001 RAL-818 1002 chr3L 22587213 22587246 chr3L 22587310 22587343 4 97 2.0 3.0 2.5 1.1 130 chr3L 22587213 intron CG14459 - chr3L 22587278 intron CG14459 - chr3L 22587343 intron CG14459 - chr3L_4_22585001 chr3L_22585001 RAL-818 1003 chr3L 22617191 22617212 chr3L 22624643 22624662 blood 7 7449 2.5 2.0 2.2 2.2 7471 chr3L 22617191 intron CG14459 - chr3L 22620926 intron CG14459 - chr3L 22624662 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-818 1004 chr3L 22659055 22659082 chr3L 22659133 22659160 6 78 11.0 9.0 10.0 0.5 105 chr3L 22659055 intergenic not near genes chr3L 22659108 intergenic not near genes chr3L 22659160 intergenic not near genes chr3L_6_22655001 chr3L_22655001 RAL-818 1005 chr3L 22786065 22786096 chr3L 22788503 22788533 4 2438 5.5 15.0 10.2 0.4 2468 chr3L 22786065 3` UTR SPoCk + chr3L 22787299 3` UTR SPoCk + chr3L 22788533 exon CG14448 + chr3L_4_22785001 chr3L_22785001 RAL-818 1006 chr3L 22797330 22797365 chr3L 22797423 22797458 7 92 5.0 4.0 4.5 1.3 128 chr3L 22797330 3` UTR jim - chr3L 22797394 3` UTR jim - chr3L 22797458 3` UTR jim - chr3L_7_22795001 chr3L_22795001 RAL-818 1007 chr3L 22853463 22853723 chr3L 22853550 22853809 16 85 2.5 5.5 4.0 3.2 346 chr3L 22853463 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853809 5` UTR CR43426 + chr3L_16_22850001 chr3L_22850001 RAL-818 1008 chr3L 22865982 22866006 chr3L 22867115 22867136 Doc 7 1133 5.0 2.5 3.8 1.5 1154 chr3L 22865982 intron CG33170 + chr3L 22866559 intron CG33170 + chr3L 22867136 intron CG33170 + chr3L_7_22865001 chr3L_22865001 RAL-818 1009 chr3L 9102747 9102774 chr3L 22908066 22908066 4 13805306 18.5 11.0 14.8 0.3 13805319 chr3L 9102747 exon bol - chr3L 16005406 exon mRpS31 + chr3L 22908066 intergenic not near genes chr3L_4_16005001 chr3L_16005001 RAL-818 1010 chr3L 22989868 22989878 chr3L 22996836 22996852 297 4 6969 3.5 0.5 2.0 1.3 6984 chr3L 22989868 intergenic not near genes chr3L 22993360 intergenic not near genes chr3L 22996852 intergenic not near genes chr3L_4_22990001 chr3L_22990001 RAL-818 1011 chr3L 23182264 23182290 chr3L 23182375 23182398 4 108 12.5 13.5 13.0 0.3 134 chr3L 23182264 intron CG34031 + chr3L 23182331 intron CG34031 + chr3L 23182398 intron CG34031 + chr3L_4_23180001 chr3L_23180001 RAL-818 1012 chr3L 23218040 23218070 chr3L 23218520 23218550 5 479 8.5 2.5 5.5 0.8 510 chr3L 23218040 intron nAChRalpha4 + chr3L 23218295 intron nAChRalpha4 + chr3L 23218550 intron nAChRalpha4 + chr3L_5_23215001 chr3L_23215001 RAL-818 1013 chr3L 24012404 24012429 chr3L 24020745 24020770 roo 5 8338 3.0 2.0 2.5 1.4 8366 chr3L 24012404 intergenic not near genes chr3L 24016587 intergenic not near genes chr3L 24020770 intergenic not near genes chr3L_5_24015001 chr3L_24015001 RAL-818 1014 chr3L 25354056 25354073 chr3L 25354236 25354254 4 181 4.5 8.5 6.5 0.5 198 chr3L 25354056 intergenic not near genes chr3L 25354155 intergenic not near genes chr3L 25354254 intergenic not near genes chr3L_4_25350001 chr3L_25350001 RAL-818 1015 chr3L 27390693 27390710 chr3L 27390770 27390789 7 78 23.5 22.5 23.0 0.3 96 chr3L 27390693 intron Dbp80 + chr3L 27390741 intron Dbp80 + chr3L 27390789 intron Dbp80 + chr3L_7_27390001 chr3L_27390001 RAL-818 1016 chr3R 1252420 1252425 chr3R 1266231 1266236 297 4 13811 11.5 5.5 8.5 0.4 13816 chr3R 1252420 intergenic not near genes chr3R 1259328 intergenic not near genes chr3R 1266236 intergenic not near genes chr3R_4_1255001 chr3R_1255001 RAL-818 1017 chr3R 2534135 2534161 chr3R 2541701 2541730 4 7564 4.0 8.5 6.2 0.6 7595 chr3R 2534135 intergenic not near genes chr3R 2537932 intergenic not near genes chr3R 2541730 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-818 1018 chr3R 4063821 4063826 chr3R 4069099 4069106 5 5277 4.5 7.0 5.8 0.7 5285 chr3R 4063821 intergenic not near genes chr3R 4066464 intergenic not near genes chr3R 4069106 intergenic not near genes chr3R_5_4065001 chr3R_4065001 RAL-818 1019 chr3R 4132908 4132925 chr3R 4133062 4133079 4 154 0.0 0.5 0.2 3.3 171 chr3R 4132908 5` UTR Gfat1 + chr3R 4132994 intron Gfat1 + chr3R 4133079 intron Gfat1 + chr3R_4_4130001 chr3R_4130001 RAL-818 1020 chr3R 4206080 4206096 chr3R 4211655 4211671 mdg3 7 5575 3.0 2.0 2.5 2.0 5591 chr3R 4206080 intron CG14636 - chr3R 4208876 intron CG14636 - chr3R 4211671 intron CG14636 - chr3R_7_4205001 chr3R_4205001 RAL-818 1021 chr3R 4408411 4408442 chr3R 4412715 4412746 Juan 5 4304 2.5 2.5 2.5 1.4 4335 chr3R 4408411 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-818 1022 chr3R 4609545 4609580 chr3R 4610709 4610744 1360 7 1163 1.5 3.0 2.2 2.2 1199 chr3R 4609545 intergenic not near genes chr3R 4610144 intergenic not near genes chr3R 4610744 intergenic not near genes chr3R_7_4610001 chr3R_4610001 RAL-818 1023 chr3R 4753240 4753268 chr3R 4757543 4757570 F-element 7 4301 6.0 3.0 4.5 1.3 4330 chr3R 4753240 intron,intron atms +,CG44098 - chr3R 4755405 intron,intron atms +,CG44098 - chr3R 4757570 intron,exon atms +,CG44098 - chr3R_7_4755001 chr3R_4755001 RAL-818 1024 chr3R 4796110 4796147 chr3R 4796233 4796270 14 123 2.0 3.0 2.5 4.0 160 chr3R 4796110 intron ctrip - chr3R 4796190 intron ctrip - chr3R 4796270 intron ctrip - chr3R_14_4795001 chr3R_4795001 RAL-818 1025 chr3R 4861565 4861591 chr3R 4861646 4861671 11 79 3.0 4.0 3.5 2.4 106 chr3R 4861565 intron opa + chr3R 4861618 intron opa + chr3R 4861671 intron opa + chr3R_11_4860001 chr3R_4860001 RAL-818 1026 chr3R 4887477 4887512 chr3R 4894854 4894889 rover 9 7376 1.5 3.0 2.2 2.8 7412 chr3R 4887477 intergenic not near genes chr3R 4891183 intergenic not near genes chr3R 4894889 intergenic not near genes chr3R_9_4890001 chr3R_4890001 RAL-818 1027 chr3R 4943611 4943620 chr3R 4943716 4943725 6 105 4.5 1.5 3.0 1.5 114 chr3R 4943611 intron Cdep + chr3R 4943668 intron Cdep + chr3R 4943725 intron Cdep + chr3R_6_4940001 chr3R_4940001 RAL-818 1028 chr3R 5045843 5045865 chr3R 5052945 5052967 HMS-Beagle 5 7102 5.0 1.5 3.2 1.2 7124 chr3R 5045843 intron CR43635 - chr3R 5049405 intergenic not near genes chr3R 5052967 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-818 1029 chr3R 5067988 5068014 chr3R 5073498 5073531 mdg3 10 5516 3.5 2.5 3.0 2.5 5543 chr3R 5067988 intergenic not near genes chr3R 5070760 intergenic not near genes chr3R 5073531 intergenic not near genes chr3R_10_5070001 chr3R_5070001 RAL-818 1030 chr3R 5131345 5131375 chr3R 5131424 5131454 7 75 4.0 4.5 4.2 1.3 109 chr3R 5131345 intergenic not near genes chr3R 5131400 intergenic not near genes chr3R 5131454 intergenic not near genes chr3R_7_5130001 chr3R_5130001 RAL-818 1031 chr3R 5162941 5162964 chr3R 5163093 5163116 4 151 9.5 7.0 8.2 0.4 175 chr3R 5162941 intron dpr16 + chr3R 5163028 intron dpr16 + chr3R 5163116 intron dpr16 + chr3R_4_5160001 chr3R_5160001 RAL-818 1032 chr3R 5213267 5213292 chr3R 5213866 5213891 6 599 3.5 2.5 3.0 1.5 624 chr3R 5213267 intron cno - chr3R 5213579 intron cno - chr3R 5213891 intron cno - chr3R_6_5210001 chr3R_5210001 RAL-818 1033 chr3R 5250885 5250914 chr3R 5250997 5251024 5 111 8.0 8.0 8.0 0.6 139 chr3R 5250885 intron CG12163 - chr3R 5250954 intron CG12163 - chr3R 5251024 intron CG12163 - chr3R_5_5250001 chr3R_5250001 RAL-818 1034 chr3R 5278092 5278121 chr3R 5278173 5278202 11 81 3.0 5.0 4.0 2.2 110 chr3R 5278092 intron mtd - chr3R 5278147 intron mtd - chr3R 5278202 intron mtd - chr3R_11_5275001 chr3R_5275001 RAL-818 1035 chr3R 5338408 5338427 chr3R 5343575 5343603 Rt1c 9 5176 1.0 5.0 3.0 2.2 5195 chr3R 5338408 intron mtd - chr3R 5341006 intron mtd - chr3R 5343603 intron mtd - chr3R_9_5340001 chr3R_5340001 RAL-818 1036 chr3R 5385971 5386006 chr3R 5386142 5386175 11 171 3.5 5.0 4.2 2.1 204 chr3R 5385971 intron kkv - chr3R 5386073 intron kkv - chr3R 5386175 intron kkv - chr3R_11_5385001 chr3R_5385001 RAL-818 1037 chr3R 5445964 5445993 chr3R 5452424 5452453 Burdock 8 6460 1.0 4.0 2.5 2.3 6489 chr3R 5445964 intron CG14669 + chr3R 5449208 intron CG14669 + chr3R 5452453 intron CG14669 + chr3R_8_5445001 chr3R_5445001 RAL-818 1038 chr3R 5765629 5765658 chr3R 5765713 5765736 7 83 5.5 4.5 5.0 1.2 107 chr3R 5765629 intron CG2082 - chr3R 5765682 intron CG2082 - chr3R 5765736 intron CG2082 - chr3R_7_5765001 chr3R_5765001 RAL-818 1039 chr3R 5769231 5769264 chr3R 5769329 5769362 9 98 4.5 5.5 5.0 1.5 131 chr3R 5769231 intron CG2082 - chr3R 5769296 intron CG2082 - chr3R 5769362 intron CG2082 - chr3R_9_5765001 chr3R_5765001 RAL-818 1040 chr3R 5772377 5772405 chr3R 5772535 5772563 10 158 0.5 1.5 1.0 5.0 186 chr3R 5772377 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772563 intron CG2082 - chr3R_10_5770001 chr3R_5770001 RAL-818 1041 chr3R 5809112 5809137 chr3R 5809353 5809377 pogo 8 240 4.5 3.5 4.0 1.6 265 chr3R 5809112 3` UTR CG11000 + chr3R 5809244 3` UTR CG11000 + chr3R 5809377 3` UTR CG11000 + chr3R_8_5805001 chr3R_5805001 RAL-818 1042 chr3R 5822383 5822413 chr3R 5823550 5823579 1360 6 1167 2.0 3.0 2.5 1.7 1196 chr3R 5822383 3` UTR CG2023 - chr3R 5822981 3` UTR CG2023 - chr3R 5823579 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-818 1043 chr3R 5840820 5840851 chr3R 5840909 5840940 7 89 8.5 6.5 7.5 0.8 120 chr3R 5840820 intergenic CG1213 + chr3R 5840880 intergenic CG1213 + chr3R 5840940 intergenic CG1213 + chr3R_7_5840001 chr3R_5840001 RAL-818 1044 chr3R 5914173 5914199 chr3R 5914294 5914323 7 123 2.0 5.5 3.8 1.5 150 chr3R 5914173 intron CG34113 - chr3R 5914248 intron CG34113 - chr3R 5914323 intron CG34113 - chr3R_7_5910001 chr3R_5910001 RAL-818 1045 chr3R 5927560 5927592 chr3R 5927800 5927830 pogo 9 239 2.5 1.5 2.0 3.0 270 chr3R 5927560 intron CG34113 - chr3R 5927695 intron CG34113 - chr3R 5927830 intron CG34113 - chr3R_9_5925001 chr3R_5925001 RAL-818 1046 chr3R 5947963 5947996 chr3R 5948058 5948091 5 94 3.0 1.5 2.2 1.6 128 chr3R 5947963 intron CG34113 - chr3R 5948027 intron CG34113 - chr3R 5948091 intron CG34113 - chr3R_5_5945001 chr3R_5945001 RAL-818 1047 chr3R 6141914 6141952 chr3R 6141991 6142029 7 73 4.0 4.0 4.0 1.4 115 chr3R 6141914 intergenic not near genes chr3R 6141972 intergenic not near genes chr3R 6142029 intergenic not near genes chr3R_7_6140001 chr3R_6140001 RAL-818 1048 chr3R 6158525 6158539 chr3R 6167107 6167120 Tirant 5 8582 3.5 7.5 5.5 0.8 8595 chr3R 6158525 intergenic not near genes chr3R 6162822 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-818 1049 chr3R 6206289 6206318 chr3R 6206506 6206533 BS 7 216 5.0 4.0 4.5 1.3 244 chr3R 6206289 exon Osi24 + chr3R 6206411 intron Osi24 + chr3R 6206533 intron Osi24 + chr3R_7_6205001 chr3R_6205001 RAL-818 1050 chr3R 6343709 6343732 chr3R 6343812 6343835 4 102 2.0 1.5 1.8 1.4 126 chr3R 6343709 3` UTR CG10298 + chr3R 6343772 3` UTR CG10298 + chr3R 6343835 intergenic CG10298 +,CG17919 + chr3R_4_6340001 chr3R_6340001 RAL-818 1051 chr3R 6420057 6420083 chr3R 6420140 6420159 8 83 4.0 3.5 3.8 1.7 102 chr3R 6420057 intron gpp + chr3R 6420108 intron gpp + chr3R 6420159 intron gpp + chr3R_8_6420001 chr3R_6420001 RAL-818 1052 chr3R 6433727 6433747 chr3R 6433803 6433830 7 81 5.0 2.0 3.5 1.6 103 chr3R 6433727 intron gpp + chr3R 6433778 intron gpp + chr3R 6433830 intron gpp + chr3R_7_6430001 chr3R_6430001 RAL-818 1053 chr3R 6510024 6510052 chr3R 6515105 6515133 jockey 4 5081 2.0 0.5 1.2 1.8 5109 chr3R 6510024 intergenic not near genes chr3R 6512578 intergenic not near genes chr3R 6515133 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-818 1054 chr3R 6519114 6519132 chr3R 6519221 6519240 5 106 4.5 2.0 3.2 1.2 126 chr3R 6519114 intergenic not near genes chr3R 6519177 intergenic not near genes chr3R 6519240 intergenic not near genes chr3R_5_6515001 chr3R_6515001 RAL-818 1055 chr3R 6538214 6538232 chr3R 6538312 6538329 6 97 5.5 4.0 4.8 1.0 115 chr3R 6538214 intron dpr11 - chr3R 6538272 intron dpr11 - chr3R 6538329 exon dpr11 - chr3R_6_6535001 chr3R_6535001 RAL-818 1056 chr3R 6550323 6550347 chr3R 6550404 6550419 7 76 6.5 6.5 6.5 0.9 96 chr3R 6550323 intron dpr11 - chr3R 6550371 intron dpr11 - chr3R 6550419 intron dpr11 - chr3R_7_6550001 chr3R_6550001 RAL-818 1057 chr3R 6551113 6551140 chr3R 6551207 6551234 6 94 7.5 4.0 5.8 0.9 121 chr3R 6551113 intron dpr11 - chr3R 6551174 intron dpr11 - chr3R 6551234 intron dpr11 - chr3R_6_6550001 chr3R_6550001 RAL-818 1058 chr3R 6698002 6698035 chr3R 6698081 6698114 6 79 1.5 1.0 1.2 2.7 112 chr3R 6698002 intergenic not near genes chr3R 6698058 intergenic not near genes chr3R 6698114 intergenic not near genes chr3R_6_6695001 chr3R_6695001 RAL-818 1059 chr3R 6737507 6737529 chr3R 6739294 6739316 Doc 4 1787 2.0 3.0 2.5 1.1 1809 chr3R 6737507 intron pb - chr3R 6738412 intron pb - chr3R 6739316 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-818 1060 chr3R 6807264 6807289 chr3R 6807346 6807371 4 82 2.0 2.0 2.0 1.3 107 chr3R 6807264 intergenic not near genes chr3R 6807318 intergenic not near genes chr3R 6807371 intergenic not near genes chr3R_4_6805001 chr3R_6805001 RAL-818 1061 chr3R 6819631 6819665 chr3R 6819715 6819749 4 84 4.5 4.5 4.5 0.7 118 chr3R 6819631 intergenic not near genes chr3R 6819690 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R 6819749 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R_4_6815001 chr3R_6815001 RAL-818 1062 chr3R 6828025 6828032 chr3R 6828101 6828108 4 76 1.0 3.0 2.0 1.3 83 chr3R 6828025 intron Scr - chr3R 6828066 intron Scr - chr3R 6828108 intron Scr - chr3R_4_6825001 chr3R_6825001 RAL-818 1063 chr3R 6862221 6862252 chr3R 6862308 6862338 5 84 4.5 2.5 3.5 1.1 117 chr3R 6862221 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862338 intergenic not near genes chr3R_5_6860001 chr3R_6860001 RAL-818 1064 chr3R 6891258 6891269 chr3R 6891334 6891344 4 76 4.5 3.5 4.0 0.8 86 chr3R 6891258 intergenic not near genes chr3R 6891301 intergenic not near genes chr3R 6891344 intergenic not near genes chr3R_4_6890001 chr3R_6890001 RAL-818 1065 chr3R 6989936 6989964 chr3R 6990075 6990103 10 138 5.5 6.5 6.0 1.4 167 chr3R 6989936 intron Antp - chr3R 6990020 intron Antp - chr3R 6990103 intron Antp - chr3R_10_6990001 chr3R_6990001 RAL-818 1066 chr3R 7103283 7103319 chr3R 7103359 7103366 31 71 4.0 2.5 3.2 7.4 83 chr3R 7103283 intron Alh - chr3R 7103324 intron Alh - chr3R 7103366 intron Alh - chr3R_31_7100001 chr3R_7100001 RAL-818 1067 chr3R 7302298 7302322 chr3R 7302390 7302413 6 92 4.0 3.0 3.5 1.3 115 chr3R 7302298 intron rn - chr3R 7302356 intron rn - chr3R 7302413 intron rn - chr3R_6_7300001 chr3R_7300001 RAL-818 1068 chr3R 7393328 7393360 chr3R 7393420 7393452 6 90 5.0 5.0 5.0 1.0 124 chr3R 7393328 intergenic not near genes chr3R 7393390 intergenic not near genes chr3R 7393452 intergenic not near genes chr3R_6_7390001 chr3R_7390001 RAL-818 1069 chr3R 7396057 7396090 chr3R 7396152 7396185 5 95 4.5 1.0 2.8 1.3 128 chr3R 7396057 intergenic not near genes chr3R 7396121 intergenic not near genes chr3R 7396185 intergenic not near genes chr3R_5_7395001 chr3R_7395001 RAL-818 1070 chr3R 7511784 7511795 chr3R 7511865 7511876 4 81 3.0 6.0 4.5 0.7 92 chr3R 7511784 intron alpha-Est8 - chr3R 7511830 intron alpha-Est8 - chr3R 7511876 intron alpha-Est8 - chr3R_4_7510001 chr3R_7510001 RAL-818 1071 chr3R 7552966 7552992 chr3R 7553052 7553074 5 86 4.5 2.5 3.5 1.1 108 chr3R 7552966 intergenic not near genes chr3R 7553020 intergenic not near genes chr3R 7553074 intergenic not near genes chr3R_5_7550001 chr3R_7550001 RAL-818 1072 chr3R 7574622 7574645 chr3R 7574702 7574725 6 80 6.0 4.0 5.0 1.0 103 chr3R 7574622 intron CG34127 - chr3R 7574674 intron CG34127 - chr3R 7574725 intron CG34127 - chr3R_6_7570001 chr3R_7570001 RAL-818 1073 chr3R 7611002 7611029 chr3R 7611187 7611214 8 185 3.0 4.5 3.8 1.7 212 chr3R 7611002 intron CG34127 - chr3R 7611108 intron CG34127 - chr3R 7611214 intron CG34127 - chr3R_8_7610001 chr3R_7610001 RAL-818 1074 chr3R 7621529 7621564 chr3R 7621620 7621654 6 90 1.5 2.5 2.0 2.0 125 chr3R 7621529 intron CG34127 - chr3R 7621592 intron CG34127 - chr3R 7621654 intron CG34127 - chr3R_6_7620001 chr3R_7620001 RAL-818 1075 chr3R 7655006 7655040 chr3R 7655088 7655122 5 81 6.5 6.5 6.5 0.7 116 chr3R 7655006 intergenic not near genes chr3R 7655064 intergenic not near genes chr3R 7655122 intergenic not near genes chr3R_5_7655001 chr3R_7655001 RAL-818 1076 chr3R 7729470 7729499 chr3R 7737408 7737437 Stalker2 7 7938 1.5 3.0 2.2 2.2 7967 chr3R 7729470 intergenic not near genes chr3R 7733454 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_7_7730001 chr3R_7730001 RAL-818 1077 chr3R 7755317 7755349 chr3R 7755402 7755411 7 81 4.5 8.5 6.5 0.9 94 chr3R 7755317 intergenic not near genes chr3R 7755364 intergenic not near genes chr3R 7755411 intergenic not near genes chr3R_7_7755001 chr3R_7755001 RAL-818 1078 chr3R 7760260 7760285 chr3R 7760769 7760794 4 509 8.5 5.5 7.0 0.5 534 chr3R 7760260 intron Sp7 + chr3R 7760527 intron Sp7 + chr3R 7760794 5` UTR Sp7 + chr3R_4_7760001 chr3R_7760001 RAL-818 1079 chr3R 8013888 8013901 chr3R 8022852 8022887 10 8968 20.5 24.0 22.2 0.4 8999 chr3R 8013888 exon Pbp95 + chr3R 8018388 exon CG2747 - chr3R 8022887 exon CG2747 - chr3R_10_8015001 chr3R_8015001 RAL-818 1080 chr3R 8090271 8090296 chr3R 8090447 8090473 9 177 3.0 2.5 2.8 2.4 202 chr3R 8090271 5` UTR CR44330 + chr3R 8090372 intergenic CR44330 + chr3R 8090473 intergenic CR44330 + chr3R_9_8090001 chr3R_8090001 RAL-818 1081 chr3R 8094412 8094438 chr3R 8099717 8099743 Transpac 5 5305 1.5 1.0 1.2 2.3 5331 chr3R 8094412 intron CG7900 + chr3R 8097078 intron CG7900 + chr3R 8099743 intron CG7900 + chr3R_5_8095001 chr3R_8095001 RAL-818 1082 chr3R 8328387 8328413 chr3R 8328464 8328490 4 77 0.5 5.5 3.0 1.0 103 chr3R 8328387 intron Poxm - chr3R 8328438 intron Poxm - chr3R 8328490 intron Poxm - chr3R_4_8325001 chr3R_8325001 RAL-818 1083 chr3R 8339246 8339247 chr3R 21907534 21907536 7 13568288 16.5 26.5 21.5 0.3 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-818 1084 chr3R 8393585 8393601 chr3R 8393669 8393675 4 78 5.0 2.5 3.8 0.8 90 chr3R 8393585 intron CG45263 - chr3R 8393630 intron CG45263 - chr3R 8393675 intron CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-818 1085 chr3R 8395502 8395508 chr3R 8395656 8395676 4 168 4.5 4.0 4.2 0.8 174 chr3R 8395502 intron CG45263 - chr3R 8395589 intron CG45263 - chr3R 8395676 intron CG45263 - chr3R_4_8395001 chr3R_8395001 RAL-818 1086 chr3R 8403010 8403040 chr3R 8412176 8412206 roo 17 9164 0.0 3.5 1.8 6.1 9196 chr3R 8403010 intron CG45263 - chr3R 8407608 intron CG45263 - chr3R 8412206 intron CG45263 - chr3R_17_8405001 chr3R_8405001 RAL-818 1087 chr3R 8460255 8460266 chr3R 8460332 8460342 4 77 6.0 8.5 7.2 0.5 87 chr3R 8460255 intron CG45263 - chr3R 8460298 intron CG45263 - chr3R 8460342 intron CG45263 - chr3R_4_8460001 chr3R_8460001 RAL-818 1088 chr3R 8478082 8478095 chr3R 8478162 8478174 5 80 3.5 2.5 3.0 1.2 92 chr3R 8478082 intergenic CG45263 - chr3R 8478128 intergenic not near genes chr3R 8478174 intergenic not near genes chr3R_5_8475001 chr3R_8475001 RAL-818 1089 chr3R 8541345 8541369 chr3R 8541424 8541450 9 80 4.5 6.0 5.2 1.5 105 chr3R 8541345 intergenic not near genes chr3R 8541398 intergenic not near genes chr3R 8541450 intergenic not near genes chr3R_9_8540001 chr3R_8540001 RAL-818 1090 chr3R 8570477 8570505 chr3R 8575112 8575140 HMS-Beagle 12 4641 3.0 1.5 2.2 3.8 4663 chr3R 8570477 intergenic not near genes chr3R 8572808 intergenic not near genes chr3R 8575140 intergenic not near genes chr3R_12_8570001 chr3R_8570001 RAL-818 1091 chr3R 8601779 8601800 chr3R 8610931 8610953 roo 6 9153 4.0 5.0 4.5 1.1 9174 chr3R 8601779 intron 5-HT2B + chr3R 8606366 intron 5-HT2B + chr3R 8610953 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-818 1092 chr3R 8642414 8642445 chr3R 8642491 8642505 4 72 4.0 4.5 4.2 0.8 91 chr3R 8642414 intergenic not near genes chr3R 8642460 intergenic not near genes chr3R 8642505 intergenic not near genes chr3R_4_8640001 chr3R_8640001 RAL-818 1093 chr3R 8684879 8684908 chr3R 8684990 8685019 7 110 4.0 6.5 5.2 1.1 140 chr3R 8684879 intron,exon CR44937 -,CG44227 - chr3R 8684949 intron,exon CR44937 -,CG44227 - chr3R 8685019 intron,exon CR44937 -,CG44227 - chr3R_7_8680001 chr3R_8680001 RAL-818 1094 chr3R 8707354 8707385 chr3R 8709795 8709826 jockey 9 2441 3.5 6.5 5.0 1.5 2472 chr3R 8707354 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_9_8705001 chr3R_8705001 RAL-818 1095 chr3R 8861936 8861949 chr3R 8862011 8862027 4 77 6.0 7.5 6.8 0.5 91 chr3R 8861936 intron pyd - chr3R 8861982 intron pyd - chr3R 8862027 intron pyd - chr3R_4_8860001 chr3R_8860001 RAL-818 1096 chr3R 8917895 8917911 chr3R 8917975 8917991 5 80 2.0 5.5 3.8 1.0 96 chr3R 8917895 intron pyd - chr3R 8917943 intron pyd - chr3R 8917991 intron pyd - chr3R_5_8915001 chr3R_8915001 RAL-818 1097 chr3R 8932884 8932910 chr3R 8933116 8933142 7 233 5.0 3.0 4.0 1.4 258 chr3R 8932884 intergenic not near genes chr3R 8933013 intergenic not near genes chr3R 8933142 intergenic not near genes chr3R_7_8930001 chr3R_8930001 RAL-818 1098 chr3R 9141141 9141168 chr3R 9141225 9141252 7 84 1.0 4.5 2.8 1.8 111 chr3R 9141141 intron pum - chr3R 9141196 intron pum - chr3R 9141252 intron pum - chr3R_7_9140001 chr3R_9140001 RAL-818 1099 chr3R 9278778 9278804 chr3R 9284038 9284060 Rt1a 9 5259 1.5 7.0 4.2 1.7 5282 chr3R 9278778 intergenic not near genes chr3R 9281419 intergenic not near genes chr3R 9284060 intergenic not near genes chr3R_9_9280001 chr3R_9280001 RAL-818 1100 chr3R 9284345 9284375 chr3R 9284442 9284472 5 97 4.5 4.5 4.5 0.9 127 chr3R 9284345 intergenic not near genes chr3R 9284408 intergenic not near genes chr3R 9284472 intergenic not near genes chr3R_5_9280001 chr3R_9280001 RAL-818 1101 chr3R 9319572 9319604 chr3R 9320007 9320039 jockey 5 435 1.0 1.5 1.2 2.3 467 chr3R 9319572 intron CG8861 - chr3R 9319806 intron CG8861 - chr3R 9320039 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-818 1102 chr3R 9382821 9382849 chr3R 9382946 9382974 7 124 5.5 3.0 4.2 1.3 153 chr3R 9382821 intron FER - chr3R 9382898 intron FER - chr3R 9382974 intron FER - chr3R_7_9380001 chr3R_9380001 RAL-818 1103 chr3R 9459688 9459716 chr3R 9465655 9465683 9 5968 18.0 7.5 12.8 0.7 5995 chr3R 9459688 intron GstZ2 - chr3R 9462686 3` UTR CG16779 - chr3R 9465683 3` UTR CG16779 - chr3R_9_9460001 chr3R_9460001 RAL-818 1104 chr3R 9836871 9836899 chr3R 9836959 9836987 5 88 9.0 9.0 9.0 0.5 116 chr3R 9836871 intron Teh1 - chr3R 9836929 intron Teh1 - chr3R 9836987 intron Teh1 - chr3R_5_9835001 chr3R_9835001 RAL-818 1105 chr3R 9862350 9862362 chr3R 9862413 9862443 4 68 8.5 7.0 7.8 0.5 93 chr3R 9862350 intron Teh1 - chr3R 9862396 intron Teh1 - chr3R 9862443 intron Teh1 - chr3R_4_9860001 chr3R_9860001 RAL-818 1106 chr3R 10151000 10151034 chr3R 10151078 10151112 4 78 11.0 10.5 10.8 0.3 112 chr3R 10151000 intron Invadolysin + chr3R 10151056 intron Invadolysin + chr3R 10151112 intron Invadolysin + chr3R_4_10150001 chr3R_10150001 RAL-818 1107 chr3R 10231788 10231810 chr3R 10237364 10237387 mdg3 4 5577 0.5 2.0 1.2 1.8 5599 chr3R 10231788 intron CG42795 + chr3R 10234588 intron CG42795 + chr3R 10237387 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-818 1108 chr3R 10275556 10275585 chr3R 10275633 10275662 7 77 1.0 0.5 0.8 3.9 106 chr3R 10275556 intron CG43143 + chr3R 10275609 intron CG43143 + chr3R 10275662 intron CG43143 + chr3R_7_10275001 chr3R_10275001 RAL-818 1109 chr3R 10531872 10531897 chr3R 10531953 10531978 12 81 6.5 8.0 7.2 1.5 106 chr3R 10531872 intron hth - chr3R 10531925 intron hth - chr3R 10531978 intron hth - chr3R_12_10530001 chr3R_10530001 RAL-818 1110 chr3R 10563462 10563487 chr3R 10563560 10563563 6 94 8.5 7.0 7.8 0.7 101 chr3R 10563462 intron hth - chr3R 10563512 intron hth - chr3R 10563563 intron hth - chr3R_6_10560001 chr3R_10560001 RAL-818 1111 chr3R 10594594 10594622 chr3R 10594678 10594707 10 85 9.0 7.5 8.2 1.1 113 chr3R 10594594 intron hth - chr3R 10594650 intron hth - chr3R 10594707 intron hth - chr3R_10_10590001 chr3R_10590001 RAL-818 1112 chr3R 10723765 10723789 chr3R 10723857 10723881 6 92 8.0 3.0 5.5 0.9 116 chr3R 10723765 intergenic not near genes chr3R 10723823 intergenic not near genes chr3R 10723881 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-818 1113 chr3R 10727647 10727662 chr3R 10727727 10727742 5 80 13.0 12.0 12.5 0.4 95 chr3R 10727647 intergenic not near genes chr3R 10727694 intergenic not near genes chr3R 10727742 intergenic not near genes chr3R_5_10725001 chr3R_10725001 RAL-818 1114 chr3R 10732842 10732870 chr3R 10732925 10732955 5 84 2.5 0.5 1.5 2.0 113 chr3R 10732842 intergenic not near genes chr3R 10732898 intergenic not near genes chr3R 10732955 intergenic not near genes chr3R_5_10730001 chr3R_10730001 RAL-818 1115 chr3R 10745426 10745451 chr3R 10745513 10745538 4 87 6.0 4.0 5.0 0.7 112 chr3R 10745426 intron TkR86C - chr3R 10745482 intron TkR86C - chr3R 10745538 intron TkR86C - chr3R_4_10745001 chr3R_10745001 RAL-818 1116 chr3R 10904908 10904934 chr3R 10905112 10905138 4 204 5.5 4.5 5.0 0.7 230 chr3R 10904908 intergenic not near genes chr3R 10905023 intergenic not near genes chr3R 10905138 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-818 1117 chr3R 10919683 10919714 chr3R 10919761 10919792 6 78 1.5 2.5 2.0 2.0 109 chr3R 10919683 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919792 intergenic not near genes chr3R_6_10915001 chr3R_10915001 RAL-818 1118 chr3R 10920053 10920078 chr3R 10920131 10920155 6 78 2.0 2.5 2.2 1.9 102 chr3R 10920053 intergenic not near genes chr3R 10920104 intergenic not near genes chr3R 10920155 intergenic not near genes chr3R_6_10920001 chr3R_10920001 RAL-818 1119 chr3R 11085467 11085490 chr3R 11085543 11085567 7 77 0.0 2.0 1.0 3.5 100 chr3R 11085467 3` UTR CR44940 - chr3R 11085517 intergenic CR44940 - chr3R 11085567 intergenic CR44940 - chr3R_7_11085001 chr3R_11085001 RAL-818 1120 chr3R 11102329 11102353 chr3R 11102410 11102430 4 77 7.5 7.0 7.2 0.5 101 chr3R 11102329 intergenic not near genes chr3R 11102380 intergenic not near genes chr3R 11102430 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-818 1121 chr3R 11130817 11130836 chr3R 11130974 11131008 4 168 8.5 5.5 7.0 0.5 191 chr3R 11130817 intergenic not near genes chr3R 11130912 intergenic not near genes chr3R 11131008 intergenic not near genes chr3R_4_11130001 chr3R_11130001 RAL-818 1122 chr3R 11485554 11485567 chr3R 11485641 11485654 4 87 5.0 5.5 5.2 0.6 100 chr3R 11485554 intergenic not near genes chr3R 11485604 intergenic not near genes chr3R 11485654 intergenic not near genes chr3R_4_11485001 chr3R_11485001 RAL-818 1123 chr3R 11656498 11656529 chr3R 11656577 11656609 7 78 6.0 5.0 5.5 1.1 111 chr3R 11656498 5` UTR CG42327 + chr3R 11656554 5` UTR CG42327 + chr3R 11656609 5` UTR CG42327 + chr3R_7_11655001 chr3R_11655001 RAL-818 1124 chr3R 11728184 11728197 chr3R 11728265 11728274 4 80 0.5 3.5 2.0 1.3 90 chr3R 11728184 intron CG12594 + chr3R 11728229 intron CG12594 + chr3R 11728274 intron CG12594 + chr3R_4_11725001 chr3R_11725001 RAL-818 1125 chr3R 11811087 11811124 chr3R 11811183 11811219 20 94 9.5 6.5 8.0 2.2 132 chr3R 11811087 5` UTR ClC-a - chr3R 11811153 intron ClC-a - chr3R 11811219 intron ClC-a - chr3R_20_11810001 chr3R_11810001 RAL-818 1126 chr3R 11841069 11841098 chr3R 11846258 11846287 BS 6 5190 2.0 6.5 4.2 1.2 5218 chr3R 11841069 intron CG6959 - chr3R 11843678 intron CG6959 - chr3R 11846287 intron CG6959 - chr3R_6_11840001 chr3R_11840001 RAL-818 1127 chr3R 11919305 11919334 chr3R 11919393 11919409 9 83 8.5 6.5 7.5 1.1 104 chr3R 11919305 intron Cad87A - chr3R 11919357 intron Cad87A - chr3R 11919409 intron Cad87A - chr3R_9_11915001 chr3R_11915001 RAL-818 1128 chr3R 11994995 11995026 chr3R 11995075 11995106 6 75 4.5 2.5 3.5 1.3 111 chr3R 11994995 exon Tk - chr3R 11995050 exon Tk - chr3R 11995106 exon Tk - chr3R_6_11995001 chr3R_11995001 RAL-818 1129 chr3R 12022887 12022915 chr3R 12025064 12025074 pogo 6 2174 1.0 2.5 1.8 2.1 2187 chr3R 12022887 intergenic not near genes chr3R 12023980 intergenic not near genes chr3R 12025074 intergenic not near genes chr3R_6_12020001 chr3R_12020001 RAL-818 1130 chr3R 12039139 12039169 chr3R 12039348 12039378 11 205 3.0 5.5 4.2 2.1 239 chr3R 12039139 intergenic not near genes chr3R 12039258 intergenic not near genes chr3R 12039378 intergenic not near genes chr3R_11_12035001 chr3R_12035001 RAL-818 1131 chr3R 12040283 12040308 chr3R 12040367 12040392 9 84 2.5 4.5 3.5 2.0 109 chr3R 12040283 intergenic CG14736 + chr3R 12040338 intergenic CG14736 + chr3R 12040392 intergenic CG14736 + chr3R_9_12040001 chr3R_12040001 RAL-818 1132 chr3R 12080864 12080877 chr3R 12080941 12080949 8 76 10.0 5.0 7.5 0.9 85 chr3R 12080864 intron CG14741 - chr3R 12080906 intron CG14741 - chr3R 12080949 intron CG14741 - chr3R_8_12080001 chr3R_12080001 RAL-818 1133 chr3R 12097251 12097275 chr3R 12097355 12097379 6 103 2.5 5.5 4.0 1.2 128 chr3R 12097251 intron dpr17 + chr3R 12097315 intron dpr17 + chr3R 12097379 intron dpr17 + chr3R_6_12095001 chr3R_12095001 RAL-818 1134 chr3R 12214350 12214370 chr3R 12214441 12214461 8 91 5.0 5.5 5.2 1.3 111 chr3R 12214350 3` UTR CG4848 - chr3R 12214406 3` UTR CG4848 - chr3R 12214461 3` UTR CG4848 - chr3R_8_12210001 chr3R_12210001 RAL-818 1135 chr3R 12290321 12290341 chr3R 12290399 12290420 4 79 8.5 4.0 6.2 0.6 99 chr3R 12290321 5` UTR svp + chr3R 12290370 intron svp + chr3R 12290420 intron svp + chr3R_4_12290001 chr3R_12290001 RAL-818 1136 chr3R 12569963 12569987 chr3R 12570044 12570068 4 81 2.0 4.5 3.2 1.0 105 chr3R 12569963 intron Octbeta2R - chr3R 12570016 intron Octbeta2R - chr3R 12570068 intron Octbeta2R - chr3R_4_12570001 chr3R_12570001 RAL-818 1137 chr3R 12585764 12585771 chr3R 12585844 12585851 4 80 3.5 4.0 3.8 0.8 87 chr3R 12585764 intron Octbeta2R - chr3R 12585808 intron Octbeta2R - chr3R 12585851 intron Octbeta2R - chr3R_4_12585001 chr3R_12585001 RAL-818 1138 chr3R 12720809 12720843 chr3R 12720982 12721016 9 172 1.0 3.0 2.0 3.0 207 chr3R 12720809 intron Men - chr3R 12720912 intron Men - chr3R 12721016 intron Men - chr3R_9_12720001 chr3R_12720001 RAL-818 1139 chr3R 12763123 12763145 chr3R 12763200 12763222 6 77 0.0 0.5 0.2 5.0 99 chr3R 12763123 intron beat-Vc - chr3R 12763172 intron beat-Vc - chr3R 12763222 intron beat-Vc - chr3R_6_12760001 chr3R_12760001 RAL-818 1140 chr3R 12836341 12836372 chr3R 12836418 12836449 7 76 2.5 3.0 2.8 1.8 108 chr3R 12836341 intergenic not near genes chr3R 12836395 intergenic not near genes chr3R 12836449 intergenic not near genes chr3R_7_12835001 chr3R_12835001 RAL-818 1141 chr3R 12866494 12866518 chr3R 12866645 12866669 7 151 5.0 5.0 5.0 1.2 175 chr3R 12866494 intergenic not near genes chr3R 12866582 intergenic not near genes chr3R 12866669 intergenic not near genes chr3R_7_12865001 chr3R_12865001 RAL-818 1142 chr3R 12876983 12877006 chr3R 12877071 12877093 6 88 1.0 1.0 1.0 3.0 110 chr3R 12876983 intergenic not near genes chr3R 12877038 intergenic not near genes chr3R 12877093 intergenic not near genes chr3R_6_12875001 chr3R_12875001 RAL-818 1143 chr3R 12920154 12920182 chr3R 12925356 12925384 copia 6 5202 2.0 3.0 2.5 1.7 5230 chr3R 12920154 intron beat-Vb + chr3R 12922769 intron beat-Vb + chr3R 12925384 intron beat-Vb + chr3R_6_12920001 chr3R_12920001 RAL-818 1144 chr3R 12953201 12953226 chr3R 12953565 12953575 9 360 4.0 2.5 3.2 2.1 374 chr3R 12953201 intron grsm - chr3R 12953388 intron grsm - chr3R 12953575 intron grsm - chr3R_9_12950001 chr3R_12950001 RAL-818 1145 chr3R 12972560 12972571 chr3R 12972699 12972710 6 139 5.5 1.5 3.5 1.3 150 chr3R 12972560 intron CG7381 - chr3R 12972635 intron CG7381 - chr3R 12972710 intron CG7381 - chr3R_6_12970001 chr3R_12970001 RAL-818 1146 chr3R 13067097 13067127 chr3R 13067173 13067203 5 76 0.0 0.0 0.0 5.0 106 chr3R 13067097 intron sim + chr3R 13067150 intron sim + chr3R 13067203 intron sim + chr3R_5_13065001 chr3R_13065001 RAL-818 1147 chr3R 13120775 13120794 chr3R 13120852 13120866 7 76 2.5 6.0 4.2 1.3 91 chr3R 13120775 intron timeout + chr3R 13120820 intron timeout + chr3R 13120866 intron timeout + chr3R_7_13120001 chr3R_13120001 RAL-818 1148 chr3R 13135837 13135856 chr3R 13138012 13138031 pogo 6 2175 1.0 3.0 2.0 2.0 2194 chr3R 13135837 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136934 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138031 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13135001 chr3R_13135001 RAL-818 1149 chr3R 13143048 13143061 chr3R 13148624 13148637 mdg3 7 5576 3.5 6.0 4.8 1.2 5589 chr3R 13143048 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145842 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148637 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-818 1150 chr3R 13205410 13205443 chr3R 13205491 13205524 13 80 1.0 3.5 2.2 4.1 114 chr3R 13205410 intergenic not near genes chr3R 13205467 intergenic not near genes chr3R 13205524 intergenic not near genes chr3R_13_13205001 chr3R_13205001 RAL-818 1151 chr3R 13206652 13206675 chr3R 13206889 13206912 4 236 0.0 2.0 1.0 2.0 260 chr3R 13206652 intergenic not near genes chr3R 13206782 intergenic not near genes chr3R 13206912 intergenic not near genes chr3R_4_13205001 chr3R_13205001 RAL-818 1152 chr3R 13274217 13274248 chr3R 13274296 13274327 8 79 1.5 4.0 2.8 2.1 110 chr3R 13274217 intergenic not near genes chr3R 13274272 intergenic not near genes chr3R 13274327 intergenic not near genes chr3R_8_13270001 chr3R_13270001 RAL-818 1153 chr3R 13276996 13277016 chr3R 13277085 13277104 8 88 2.0 3.5 2.8 2.1 108 chr3R 13276996 intergenic not near genes chr3R 13277050 intergenic not near genes chr3R 13277104 intergenic not near genes chr3R_8_13275001 chr3R_13275001 RAL-818 1154 chr3R 13349014 13349021 chr3R 13349089 13349097 4 76 1.0 3.0 2.0 1.3 83 chr3R 13349014 intergenic not near genes chr3R 13349056 intergenic not near genes chr3R 13349097 intergenic not near genes chr3R_4_13345001 chr3R_13345001 RAL-818 1155 chr3R 13376271 13376303 chr3R 13376360 13376392 4 88 1.5 3.0 2.2 1.2 121 chr3R 13376271 intron CG9813 - chr3R 13376332 intron CG9813 - chr3R 13376392 intron CG9813 - chr3R_4_13375001 chr3R_13375001 RAL-818 1156 chr3R 13380722 13380752 chr3R 13380810 13380840 12 88 2.0 4.5 3.2 2.9 118 chr3R 13380722 exon CG8870 + chr3R 13380781 exon CG8870 + chr3R 13380840 intron CG8870 + chr3R_12_13380001 chr3R_13380001 RAL-818 1157 chr3R 13418668 13418681 chr3R 13418744 13418757 4 76 1.5 0.0 0.8 2.2 89 chr3R 13418668 intergenic not near genes chr3R 13418712 intergenic not near genes chr3R 13418757 intergenic not near genes chr3R_4_13415001 chr3R_13415001 RAL-818 1158 chr3R 13496632 13496643 chr3R 13496711 13496720 5 79 3.0 0.0 1.5 2.0 88 chr3R 13496632 intergenic not near genes chr3R 13496676 intergenic not near genes chr3R 13496720 intergenic not near genes chr3R_5_13495001 chr3R_13495001 RAL-818 1159 chr3R 13603059 13603074 chr3R 13603148 13603165 6 90 3.0 2.0 2.5 1.7 106 chr3R 13603059 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603165 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-818 1160 chr3R 13693028 13693028 chr3R 21907534 21907536 14 8214507 7.0 26.5 16.8 0.8 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_14_17800001 chr3R_17800001 RAL-818 1161 chr3R 13782051 13782087 chr3R 13782132 13782167 10 81 2.5 3.0 2.8 2.6 116 chr3R 13782051 exon CG9286 + chr3R 13782109 intergenic CG9286 +,Dip-B + chr3R 13782167 intergenic CG9286 +,Dip-B + chr3R_10_13780001 chr3R_13780001 RAL-818 1162 chr3R 13923443 13923456 chr3R 13923520 13923533 4 77 5.0 5.0 5.0 0.7 90 chr3R 13923443 intergenic not near genes chr3R 13923488 intergenic not near genes chr3R 13923533 intergenic not near genes chr3R_4_13920001 chr3R_13920001 RAL-818 1163 chr3R 13948229 13948258 chr3R 13948307 13948336 4 78 2.0 0.5 1.2 1.8 107 chr3R 13948229 intergenic CG31517 + chr3R 13948282 intergenic CG31517 + chr3R 13948336 intergenic CG31517 + chr3R_4_13945001 chr3R_13945001 RAL-818 1164 chr3R 14021650 14021672 chr3R 14023465 14023489 S-element 8 1816 3.5 1.5 2.5 2.3 1839 chr3R 14021650 intron rdx - chr3R 14022570 intron rdx - chr3R 14023489 intron rdx - chr3R_8_14020001 chr3R_14020001 RAL-818 1165 chr3R 14077638 14077653 chr3R 14077715 14077730 4 76 1.0 5.0 3.0 1.0 92 chr3R 14077638 intron foxo + chr3R 14077684 intron foxo + chr3R 14077730 intron foxo + chr3R_4_14075001 chr3R_14075001 RAL-818 1166 chr3R 14098691 14098701 chr3R 14098769 14098780 4 78 8.5 5.0 6.8 0.5 89 chr3R 14098691 intergenic not near genes chr3R 14098736 intergenic not near genes chr3R 14098780 intergenic not near genes chr3R_4_14095001 chr3R_14095001 RAL-818 1167 chr3R 14117436 14117451 chr3R 14117512 14117527 6 76 4.5 2.5 3.5 1.3 91 chr3R 14117436 intron Kif19A - chr3R 14117482 intron Kif19A - chr3R 14117527 intron Kif19A - chr3R_6_14115001 chr3R_14115001 RAL-818 1168 chr3R 14180824 14180834 chr3R 14185575 14185599 F-element 4 4762 2.0 0.0 1.0 2.0 4775 chr3R 14180824 intron Dop1R1 - chr3R 14183212 intron Dop1R1 - chr3R 14185599 intron Dop1R1 - chr3R_4_14180001 chr3R_14180001 RAL-818 1169 chr3R 14246408 14246416 chr3R 14247885 14247886 jockey 5 1483 5.5 2.0 3.8 1.0 1478 chr3R 14246408 intergenic not near genes chr3R 14247147 intergenic not near genes chr3R 14247886 intergenic not near genes chr3R_5_14245001 chr3R_14245001 RAL-818 1170 chr3R 14497404 14497422 chr3R 14497484 14497503 6 80 5.0 0.5 2.8 1.6 99 chr3R 14497404 intron CR44177 + chr3R 14497454 intron CR44177 + chr3R 14497503 intron CR44177 + chr3R_6_14495001 chr3R_14495001 RAL-818 1171 chr3R 14549036 14549057 chr3R 14549122 14549144 15 86 8.0 5.0 6.5 2.0 108 chr3R 14549036 intron Pde6 - chr3R 14549090 intron Pde6 - chr3R 14549144 intron Pde6 - chr3R_15_14545001 chr3R_14545001 RAL-818 1172 chr3R 14577966 14577990 chr3R 14578082 14578105 6 116 5.0 5.5 5.2 1.0 139 chr3R 14577966 intron stumps + chr3R 14578036 intron stumps + chr3R 14578105 intron stumps + chr3R_6_14575001 chr3R_14575001 RAL-818 1173 chr3R 14662319 14662340 chr3R 14662399 14662421 8 81 3.0 5.5 4.2 1.5 102 chr3R 14662319 intron Rad17 - chr3R 14662370 intron Rad17 - chr3R 14662421 exon Rad17 - chr3R_8_14660001 chr3R_14660001 RAL-818 1174 chr3R 14704385 14704416 chr3R 14704462 14704493 4 77 10.0 11.5 10.8 0.3 108 chr3R 14704385 intron kibra - chr3R 14704439 intron kibra - chr3R 14704493 intron kibra - chr3R_4_14700001 chr3R_14700001 RAL-818 1175 chr3R 14779067 14779097 chr3R 14779147 14779177 10 80 3.0 3.5 3.2 2.4 110 chr3R 14779067 intron jvl + chr3R 14779122 intron jvl + chr3R 14779177 intron jvl + chr3R_10_14775001 chr3R_14775001 RAL-818 1176 chr3R 15020035 15020059 chr3R 15020115 15020138 4 79 1.5 3.5 2.5 1.1 103 chr3R 15020035 intergenic not near genes chr3R 15020086 intergenic not near genes chr3R 15020138 intergenic not near genes chr3R_4_15020001 chr3R_15020001 RAL-818 1177 chr3R 15114917 15114945 chr3R 15114993 15115022 5 74 2.0 0.5 1.2 2.3 105 chr3R 15114917 intron CG42788 - chr3R 15114970 intron CG42788 - chr3R 15115022 intron CG42788 - chr3R_5_15110001 chr3R_15110001 RAL-818 1178 chr3R 15132062 15132083 chr3R 15135122 15135143 Juan 6 3060 6.5 7.0 6.8 0.8 3081 chr3R 15132062 intergenic CG42788 - chr3R 15133602 intergenic not near genes chr3R 15135143 3` UTR CG6912 - chr3R_6_15130001 chr3R_15130001 RAL-818 1179 chr3R 15157008 15157033 chr3R 15157093 15157101 5 82 4.5 2.0 3.2 1.2 93 chr3R 15157008 intron Gyc88E + chr3R 15157054 intron Gyc88E + chr3R 15157101 intron Gyc88E + chr3R_5_15155001 chr3R_15155001 RAL-818 1180 chr3R 15162540 15162562 chr3R 15167308 15167322 F-element 6 4767 1.5 0.0 0.8 3.3 4782 chr3R 15162540 intron Gyc88E + chr3R 15164931 intron Gyc88E + chr3R 15167322 intron Gyc88E + chr3R_6_15160001 chr3R_15160001 RAL-818 1181 chr3R 15286987 15286988 chr3R 21907534 21907536 4 6620547 15.5 26.5 21.0 0.2 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-818 1182 chr3R 15569457 15569484 chr3R 15569559 15569586 5 101 1.5 2.0 1.8 1.8 129 chr3R 15569457 intergenic not near genes chr3R 15569522 intergenic not near genes chr3R 15569586 intergenic not near genes chr3R_5_15565001 chr3R_15565001 RAL-818 1183 chr3R 15601165 15601193 chr3R 15608687 15608714 412 4 7522 2.5 2.5 2.5 1.1 7549 chr3R 15601165 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608714 intergenic not near genes chr3R_4_15600001 chr3R_15600001 RAL-818 1184 chr3R 15734173 15734210 chr3R 15734264 15734301 8 90 1.0 3.0 2.0 2.7 128 chr3R 15734173 intergenic not near genes chr3R 15734237 intergenic not near genes chr3R 15734301 intergenic not near genes chr3R_8_15730001 chr3R_15730001 RAL-818 1185 chr3R 15868942 15868960 chr3R 15869022 15869040 6 80 0.5 0.0 0.2 5.0 98 chr3R 15868942 intron CG31183 - chr3R 15868991 intron CG31183 - chr3R 15869040 intron CG31183 - chr3R_6_15865001 chr3R_15865001 RAL-818 1186 chr3R 15985268 15985300 chr3R 15985347 15985379 7 79 1.0 0.5 0.8 3.9 111 chr3R 15985268 intergenic not near genes chr3R 15985324 intergenic not near genes chr3R 15985379 intergenic not near genes chr3R_7_15985001 chr3R_15985001 RAL-818 1187 chr3R 16048851 16048880 chr3R 16048940 16048970 13 88 5.0 3.5 4.2 2.5 119 chr3R 16048851 intron ird5 - chr3R 16048910 intron ird5 - chr3R 16048970 intron ird5 - chr3R_13_16045001 chr3R_16045001 RAL-818 1188 chr3R 16073444 16073464 chr3R 16073548 16073568 6 104 3.5 0.5 2.0 2.0 124 chr3R 16073444 intron Mhcl - chr3R 16073506 intron Mhcl - chr3R 16073568 intron Mhcl - chr3R_6_16070001 chr3R_16070001 RAL-818 1189 chr3R 16246526 16246550 chr3R 16246602 16246625 5 75 0.0 1.5 0.8 2.8 99 chr3R 16246526 intron tara + chr3R 16246576 intron tara + chr3R 16246625 intron tara + chr3R_5_16245001 chr3R_16245001 RAL-818 1190 chr3R 16374295 16374326 chr3R 16374412 16374443 6 117 1.0 0.5 0.8 3.3 148 chr3R 16374295 intergenic ss - chr3R 16374369 intergenic ss - chr3R 16374443 3` UTR ss - chr3R_6_16370001 chr3R_16370001 RAL-818 1191 chr3R 16471225 16471256 chr3R 16471323 16471354 10 98 3.0 0.0 1.5 4.0 129 chr3R 16471225 exon CSN5 + chr3R 16471290 3` UTR CSN5 + chr3R 16471354 3` UTR CSN5 + chr3R_10_16470001 chr3R_16470001 RAL-818 1192 chr3R 16472583 16472604 chr3R 16472659 16472670 7 72 4.5 4.0 4.2 1.3 87 chr3R 16472583 intergenic Gyc-89Da + chr3R 16472626 5` UTR Gyc-89Da + chr3R 16472670 5` UTR Gyc-89Da + chr3R_7_16470001 chr3R_16470001 RAL-818 1193 chr3R 16681834 16681854 chr3R 16681921 16681935 5 82 1.0 3.5 2.2 1.6 101 chr3R 16681834 intron Ubx - chr3R 16681884 intron Ubx - chr3R 16681935 intron Ubx - chr3R_5_16680001 chr3R_16680001 RAL-818 1194 chr3R 16695248 16695262 chr3R 16695346 16695360 4 98 2.5 3.0 2.8 1.1 112 chr3R 16695248 intron Ubx - chr3R 16695304 intron Ubx - chr3R 16695360 intron Ubx - chr3R_4_16695001 chr3R_16695001 RAL-818 1195 chr3R 16756320 16756353 chr3R 16762510 16762543 diver 8 6189 1.5 1.5 1.5 3.2 6223 chr3R 16756320 intron bxd - chr3R 16759432 intron bxd - chr3R 16762543 intron bxd - chr3R_8_16755001 chr3R_16755001 RAL-818 1196 chr3R 17123260 17123280 chr3R 17123629 17123648 4 368 2.5 3.0 2.8 1.1 388 chr3R 17123260 intron cher - chr3R 17123454 intron cher - chr3R 17123648 intron cher - chr3R_4_17120001 chr3R_17120001 RAL-818 1197 chr3R 17175949 17175979 chr3R 17176028 17176058 5 79 2.0 1.5 1.8 1.8 109 chr3R 17175949 intron Mur89F - chr3R 17176004 intron Mur89F - chr3R 17176058 intron Mur89F - chr3R_5_17175001 chr3R_17175001 RAL-818 1198 chr3R 17184741 17184754 chr3R 17184817 17184830 4 76 1.0 2.0 1.5 1.6 89 chr3R 17184741 intron Mur89F - chr3R 17184786 intron Mur89F - chr3R 17184830 intron Mur89F - chr3R_4_17180001 chr3R_17180001 RAL-818 1199 chr3R 17209703 17209710 chr3R 17209789 17209798 6 87 5.5 1.0 3.2 1.4 95 chr3R 17209703 intergenic not near genes chr3R 17209750 intergenic not near genes chr3R 17209798 intergenic not near genes chr3R_6_17205001 chr3R_17205001 RAL-818 1200 chr3R 17214023 17214042 chr3R 17214099 17214118 6 76 2.0 3.0 2.5 1.7 95 chr3R 17214023 intergenic not near genes chr3R 17214070 intergenic not near genes chr3R 17214118 intergenic not near genes chr3R_6_17210001 chr3R_17210001 RAL-818 1201 chr3R 17242662 17242680 chr3R 17242744 17242762 6 81 3.0 0.5 1.8 2.1 100 chr3R 17242662 intron beat-IIb - chr3R 17242712 intron beat-IIb - chr3R 17242762 intron beat-IIb - chr3R_6_17240001 chr3R_17240001 RAL-818 1202 chr3R 17268695 17268702 chr3R 17268816 17268824 4 122 1.5 7.0 4.2 0.8 129 chr3R 17268695 intergenic not near genes chr3R 17268760 intergenic not near genes chr3R 17268824 intergenic not near genes chr3R_4_17265001 chr3R_17265001 RAL-818 1203 chr3R 17290449 17290462 chr3R 17290535 17290548 5 86 2.0 4.0 3.0 1.2 99 chr3R 17290449 intergenic not near genes chr3R 17290498 intergenic not near genes chr3R 17290548 intergenic not near genes chr3R_5_17290001 chr3R_17290001 RAL-818 1204 chr3R 17294671 17294687 chr3R 17295099 17295115 BS 4 428 2.5 2.5 2.5 1.1 444 chr3R 17294671 intergenic not near genes chr3R 17294893 intergenic not near genes chr3R 17295115 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-818 1205 chr3R 17319844 17319862 chr3R 17319923 17319939 4 78 1.5 0.5 1.0 2.0 95 chr3R 17319844 intergenic beat-IIa - chr3R 17319892 intergenic beat-IIa - chr3R 17319939 intergenic beat-IIa - chr3R_4_17315001 chr3R_17315001 RAL-818 1206 chr3R 17355495 17355523 chr3R 17355570 17355582 5 73 4.0 5.5 4.8 0.9 87 chr3R 17355495 intron beat-IIa - chr3R 17355538 intron beat-IIa - chr3R 17355582 intron beat-IIa - chr3R_5_17355001 chr3R_17355001 RAL-818 1207 chr3R 17389054 17389054 chr3R 21907534 21907536 5 4518481 5.0 26.5 15.8 0.3 4518482 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648295 5` UTR CG6195 - chr3R 21907536 intergenic CG6678 + chr3R_5_19645001 chr3R_19645001 RAL-818 1208 chr3R 17439435 17439457 chr3R 17439739 17439772 6 313 3.0 0.0 1.5 2.4 337 chr3R 17439435 intron,intron CG5873 +,CG14331 - chr3R 17439604 intron,intron CG5873 +,CG14331 - chr3R 17439772 intron,intron CG5873 +,CG14331 - chr3R_6_17435001 chr3R_17435001 RAL-818 1209 chr3R 17461198 17461230 chr3R 17461280 17461312 7 82 1.5 4.5 3.0 1.8 114 chr3R 17461198 intergenic not near genes chr3R 17461255 intergenic not near genes chr3R 17461312 intergenic not near genes chr3R_7_17460001 chr3R_17460001 RAL-818 1210 chr3R 17587230 17587241 chr3R 17587392 17587417 8 178 3.0 2.0 2.5 2.3 187 chr3R 17587230 intergenic not near genes chr3R 17587324 intergenic not near genes chr3R 17587417 intergenic not near genes chr3R_8_17585001 chr3R_17585001 RAL-818 1211 chr3R 17649979 17650000 chr3R 17650062 17650082 5 83 2.5 3.5 3.0 1.2 103 chr3R 17649979 intron CG14322 + chr3R 17650030 intron CG14322 + chr3R 17650082 intron CG14322 + chr3R_5_17650001 chr3R_17650001 RAL-818 1212 chr3R 17655862 17655865 chr3R 17655948 17655951 4 86 5.0 4.0 4.5 0.7 89 chr3R 17655862 intron CG14322 + chr3R 17655906 intron CG14322 + chr3R 17655951 intron CG14322 + chr3R_4_17655001 chr3R_17655001 RAL-818 1213 chr3R 17655868 17655892 chr3R 17655944 17655978 11 84 2.0 3.0 2.5 3.1 110 chr3R 17655868 intron CG14322 + chr3R 17655923 intron CG14322 + chr3R 17655978 intron CG14322 + chr3R_11_17655001 chr3R_17655001 RAL-818 1214 chr3R 17823208 17823234 chr3R 17823293 17823319 5 85 0.0 1.5 0.8 2.8 111 chr3R 17823208 intron tinc + chr3R 17823264 intron tinc + chr3R 17823319 intron tinc + chr3R_5_17820001 chr3R_17820001 RAL-818 1215 chr3R 17845208 17845212 chr3R 17845284 17845289 4 76 4.0 3.5 3.8 0.8 81 chr3R 17845208 intron tinc + chr3R 17845248 intron tinc + chr3R 17845289 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-818 1216 chr3R 17925860 17925888 chr3R 17927327 17927347 hobo 13 1464 4.5 7.0 5.8 1.9 1487 chr3R 17925860 intron cpo + chr3R 17926604 intron cpo + chr3R 17927347 intron cpo + chr3R_13_17925001 chr3R_17925001 RAL-818 1217 chr3R 18203714 18203725 chr3R 18203791 18203802 10 76 6.5 6.5 6.5 1.3 88 chr3R 18203714 intron CG7985 + chr3R 18203758 intron CG7985 + chr3R 18203802 intron CG7985 + chr3R_10_18200001 chr3R_18200001 RAL-818 1218 chr3R 18209770 18209793 chr3R 18209847 18209870 11 76 2.5 1.5 2.0 3.7 100 chr3R 18209770 intron CG7985 + chr3R 18209820 intron CG7985 + chr3R 18209870 intron CG7985 + chr3R_11_18205001 chr3R_18205001 RAL-818 1219 chr3R 18299265 18299279 chr3R 18302633 18302647 8 3368 15.0 23.0 19.0 0.4 3382 chr3R 18299265 5` UTR Dlc90F + chr3R 18300956 exon CG18600 - chr3R 18302647 exon CG7126 - chr3R_8_18300001 chr3R_18300001 RAL-818 1220 chr3R 18379630 18379659 chr3R 18379936 18379965 12 306 2.0 4.5 3.2 2.9 335 chr3R 18379630 intron CG7675 - chr3R 18379798 intron CG7675 - chr3R 18379965 intron CG7675 - chr3R_12_18375001 chr3R_18375001 RAL-818 1221 chr3R 18501592 18501624 chr3R 18501673 18501705 10 81 3.0 2.5 2.8 2.6 113 chr3R 18501592 intron fru - chr3R 18501648 intron fru - chr3R 18501705 intron fru - chr3R_10_18500001 chr3R_18500001 RAL-818 1222 chr3R 18606501 18606522 chr3R 18610733 18610754 F-element 4 4232 2.5 1.5 2.0 1.3 4253 chr3R 18606501 intron,intron qin +,CG14304 - chr3R 18608628 intron,intron qin +,CG14304 - chr3R 18610754 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-818 1223 chr3R 18622784 18622811 chr3R 18622855 18622882 9 75 2.5 0.5 1.5 3.6 98 chr3R 18622784 intron qin + chr3R 18622833 intron qin + chr3R 18622882 intron qin + chr3R_9_18620001 chr3R_18620001 RAL-818 1224 chr3R 18766783 18766809 chr3R 18766861 18766886 10 77 0.5 4.0 2.2 3.1 103 chr3R 18766783 intron CG7720 - chr3R 18766834 intron CG7720 - chr3R 18766886 intron CG7720 - chr3R_10_18765001 chr3R_18765001 RAL-818 1225 chr3R 18785864 18785903 chr3R 18785941 18785980 5 77 1.0 1.5 1.2 2.3 116 chr3R 18785864 intron CG7720 - chr3R 18785922 intron CG7720 - chr3R 18785980 intron CG7720 - chr3R_5_18785001 chr3R_18785001 RAL-818 1226 chr3R 18812075 18812106 chr3R 18812153 18812184 18 78 4.0 2.5 3.2 4.3 109 chr3R 18812075 intron CG18208 - chr3R 18812130 intron CG18208 - chr3R 18812184 intron CG18208 - chr3R_18_18810001 chr3R_18810001 RAL-818 1227 chr3R 18863164 18863185 chr3R 18863250 18863271 9 86 0.0 0.5 0.2 7.5 107 chr3R 18863164 intergenic not near genes chr3R 18863218 intergenic not near genes chr3R 18863271 intergenic not near genes chr3R_9_18860001 chr3R_18860001 RAL-818 1228 chr3R 18910825 18910838 chr3R 18910901 18910914 4 76 4.0 1.5 2.8 1.1 89 chr3R 18910825 intergenic EndoA +,CG14291 - chr3R 18910870 intergenic EndoA +,CG14291 - chr3R 18910914 intergenic CG14291 -,EndoA + chr3R_4_18910001 chr3R_18910001 RAL-818 1229 chr3R 19003226 19003237 chr3R 19003431 19003444 5 207 4.0 3.0 3.5 1.1 218 chr3R 19003226 intron gukh + chr3R 19003335 intron gukh + chr3R 19003444 intron gukh + chr3R_5_19000001 chr3R_19000001 RAL-818 1230 chr3R 19106823 19106851 chr3R 19106913 19106919 6 81 1.5 0.0 0.8 3.3 96 chr3R 19106823 intron CG6040 + chr3R 19106871 intron CG6040 + chr3R 19106919 intron CG6040 + chr3R_6_19105001 chr3R_19105001 RAL-818 1231 chr3R 19117063 19117072 chr3R 19117207 19117216 7 144 9.5 0.0 4.8 1.2 153 chr3R 19117063 intron CG6040 + chr3R 19117140 intron CG6040 + chr3R 19117216 intron CG6040 + chr3R_7_19115001 chr3R_19115001 RAL-818 1232 chr3R 19136407 19136443 chr3R 19139793 19139872 Bari1 6 3410 48.0 8.5 28.2 0.2 3465 chr3R 19136407 exon Cyp12a4 + chr3R 19138140 intergenic not near genes chr3R 19139872 3` UTR Ppcs - chr3R_6_19135001 chr3R_19135001 RAL-818 1233 chr3R 19140268 19140301 chr3R 19140714 19140742 19 446 2.5 2.5 2.5 5.4 474 chr3R 19140268 3` UTR Ppcs - chr3R 19140505 3` UTR Ppcs - chr3R 19140742 3` UTR Ppcs - chr3R_19_19140001 chr3R_19140001 RAL-818 1234 chr3R 19340397 19340424 chr3R 19340473 19340501 9 77 1.5 1.5 1.5 3.6 104 chr3R 19340397 intergenic not near genes chr3R 19340449 intergenic not near genes chr3R 19340501 intergenic not near genes chr3R_9_19340001 chr3R_19340001 RAL-818 1235 chr3R 19427188 19427217 chr3R 19428293 19428322 11 1105 0.5 2.5 1.5 4.4 1134 chr3R 19427188 intron CG31221 + chr3R 19427755 intron CG31221 + chr3R 19428322 intron CG31221 + chr3R_11_19425001 chr3R_19425001 RAL-818 1236 chr3R 19492746 19492767 chr3R 19492819 19492827 5 73 3.5 2.5 3.0 1.2 81 chr3R 19492746 intron Dys + chr3R 19492786 intron Dys + chr3R 19492827 intron Dys + chr3R_5_19490001 chr3R_19490001 RAL-818 1237 chr3R 19674688 19674716 chr3R 19675102 19675107 6 409 3.5 2.5 3.0 1.5 419 chr3R 19674688 intron Naam + chr3R 19674898 intron Naam + chr3R 19675107 intron Naam + chr3R_6_19670001 chr3R_19670001 RAL-818 1238 chr3R 19702320 19702343 chr3R 19702402 19702425 7 82 3.5 2.0 2.8 1.8 105 chr3R 19702320 intergenic not near genes chr3R 19702372 intergenic not near genes chr3R 19702425 intergenic not near genes chr3R_7_19700001 chr3R_19700001 RAL-818 1239 chr3R 19793900 19793925 chr3R 19793992 19794010 5 91 2.5 1.5 2.0 1.7 110 chr3R 19793900 intergenic bnl - chr3R 19793955 intergenic bnl - chr3R 19794010 intergenic bnl - chr3R_5_19790001 chr3R_19790001 RAL-818 1240 chr3R 19957267 19957299 chr3R 19957342 19957369 16 74 2.0 4.5 3.2 3.8 102 chr3R 19957267 intron Hs6st - chr3R 19957318 intron Hs6st - chr3R 19957369 intron Hs6st - chr3R_16_19955001 chr3R_19955001 RAL-818 1241 chr3R 20008822 20008848 chr3R 20008903 20008929 11 80 2.0 4.0 3.0 2.8 107 chr3R 20008822 intergenic MED25 +,Hs6st - chr3R 20008876 intergenic MED25 +,Hs6st - chr3R 20008929 intergenic MED25 +,Hs6st - chr3R_11_20005001 chr3R_20005001 RAL-818 1242 chr3R 20060631 20060655 chr3R 20060714 20060738 8 83 4.5 4.0 4.2 1.5 107 chr3R 20060631 intergenic not near genes chr3R 20060684 intergenic not near genes chr3R 20060738 intergenic not near genes chr3R_8_20060001 chr3R_20060001 RAL-818 1243 chr3R 20076948 20076976 chr3R 20077023 20077052 6 76 4.5 1.5 3.0 1.5 104 chr3R 20076948 intergenic not near genes chr3R 20077000 intergenic not near genes chr3R 20077052 intergenic not near genes chr3R_6_20075001 chr3R_20075001 RAL-818 1244 chr3R 20109541 20109568 chr3R 20114747 20114774 copia 4 5205 2.0 2.5 2.2 1.2 5233 chr3R 20109541 intergenic not near genes chr3R 20112158 intergenic not near genes chr3R 20114774 intergenic CG10887 + chr3R_4_20110001 chr3R_20110001 RAL-818 1245 chr3R 20156695 20156722 chr3R 20165865 20165892 roo 7 9170 2.0 5.0 3.5 1.6 9197 chr3R 20156695 intergenic not near genes chr3R 20161294 intergenic not near genes chr3R 20165892 intergenic not near genes chr3R_7_20160001 chr3R_20160001 RAL-818 1246 chr3R 20188191 20188215 chr3R 20188340 20188351 5 146 2.5 3.0 2.8 1.3 160 chr3R 20188191 intergenic not near genes chr3R 20188271 intergenic not near genes chr3R 20188351 intergenic not near genes chr3R_5_20185001 chr3R_20185001 RAL-818 1247 chr3R 20205562 20205592 chr3R 20205684 20205714 4 122 1.5 0.0 0.8 2.2 152 chr3R 20205562 intron Nlg4 + chr3R 20205638 intron Nlg4 + chr3R 20205714 intron Nlg4 + chr3R_4_20205001 chr3R_20205001 RAL-818 1248 chr3R 20266521 20266546 chr3R 20272991 20273017 Burdock 7 6471 1.5 1.0 1.2 3.2 6496 chr3R 20266521 intron cic + chr3R 20269769 intron cic + chr3R 20273017 intron cic + chr3R_7_20265001 chr3R_20265001 RAL-818 1249 chr3R 20282277 20282305 chr3R 20282353 20282379 6 76 0.0 3.0 1.5 2.4 102 chr3R 20282277 intron cic + chr3R 20282328 intron cic + chr3R 20282379 intron cic + chr3R_6_20280001 chr3R_20280001 RAL-818 1250 chr3R 20312857 20312883 chr3R 20312943 20312969 6 86 3.5 1.5 2.5 1.7 112 chr3R 20312857 intron CG42668 + chr3R 20312913 intron CG42668 + chr3R 20312969 intron CG42668 + chr3R_6_20310001 chr3R_20310001 RAL-818 1251 chr3R 20469289 20469461 chr3R 20469388 20469544 4 88 0.0 0.0 0.0 4.0 255 chr3R 20469289 intron Gfrl - chr3R 20469416 intron Gfrl - chr3R 20469544 intron Gfrl - chr3R_4_20465001 chr3R_20465001 RAL-818 1252 chr3R 20564125 20564156 chr3R 20564478 20564506 8 350 2.5 1.5 2.0 2.7 381 chr3R 20564125 intron CG5191 + chr3R 20564316 intron CG5191 + chr3R 20564506 intron CG5191 + chr3R_8_20560001 chr3R_20560001 RAL-818 1253 chr3R 20602590 20602624 chr3R 20602675 20602709 4 85 3.0 1.5 2.2 1.2 119 chr3R 20602590 intron bon + chr3R 20602650 intron bon + chr3R 20602709 intron bon + chr3R_4_20600001 chr3R_20600001 RAL-818 1254 chr3R 20716817 20716840 chr3R 20717147 20717177 15 335 4.5 3.0 3.8 3.1 360 chr3R 20716817 intergenic not near genes chr3R 20716997 intergenic not near genes chr3R 20717177 intergenic not near genes chr3R_15_20715001 chr3R_20715001 RAL-818 1255 chr3R 20733761 20733793 chr3R 20733853 20733884 12 89 1.5 1.5 1.5 4.8 123 chr3R 20733761 intergenic not near genes chr3R 20733822 intergenic not near genes chr3R 20733884 intergenic not near genes chr3R_12_20730001 chr3R_20730001 RAL-818 1256 chr3R 20764408 20764444 chr3R 20764504 20764539 6 95 1.5 3.5 2.5 1.7 131 chr3R 20764408 intron Syp + chr3R 20764474 intron Syp + chr3R 20764539 intron Syp + chr3R_6_20760001 chr3R_20760001 RAL-818 1257 chr3R 20771706 20771713 chr3R 20771787 20771794 4 81 0.0 3.0 1.5 1.6 88 chr3R 20771706 intron,intron Syp +,Takl1 - chr3R 20771750 intron,intron Syp +,Takl1 - chr3R 20771794 intron,exon Syp +,Takl1 - chr3R_4_20770001 chr3R_20770001 RAL-818 1258 chr3R 20854489 20854511 chr3R 20859278 20859299 Doc 6 4790 10.0 2.0 6.0 0.9 4810 chr3R 20854489 intron Ir93a - chr3R 20856894 intron Ir93a - chr3R 20859299 exon Ir93a - chr3R_6_20855001 chr3R_20855001 RAL-818 1259 chr3R 20870251 20870284 chr3R 20870336 20870369 12 85 2.5 2.5 2.5 3.4 118 chr3R 20870251 intergenic not near genes chr3R 20870310 intergenic not near genes chr3R 20870369 intergenic not near genes chr3R_12_20870001 chr3R_20870001 RAL-818 1260 chr3R 21014016 21014044 chr3R 21014094 21014122 8 78 1.5 3.0 2.2 2.5 106 chr3R 21014016 3` UTR Calx + chr3R 21014069 3` UTR Calx + chr3R 21014122 3` UTR Calx + chr3R_8_21010001 chr3R_21010001 RAL-818 1261 chr3R 21154551 21154579 chr3R 21154756 21154794 4 212 4.0 0.0 2.0 1.3 243 chr3R 21154551 intron SNF4Agamma + chr3R 21154672 intron SNF4Agamma + chr3R 21154794 intron SNF4Agamma + chr3R_4_21150001 chr3R_21150001 RAL-818 1262 chr3R 21189244 21189258 chr3R 21189342 21189357 5 99 1.5 2.0 1.8 1.8 113 chr3R 21189244 intron SNF4Agamma + chr3R 21189300 intron SNF4Agamma + chr3R 21189357 intron SNF4Agamma + chr3R_5_21185001 chr3R_21185001 RAL-818 1263 chr3R 21200111 21200136 chr3R 21200241 21200267 9 131 1.5 4.0 2.8 2.4 156 chr3R 21200111 intron SNF4Agamma + chr3R 21200189 intron SNF4Agamma + chr3R 21200267 intron SNF4Agamma + chr3R_9_21200001 chr3R_21200001 RAL-818 1264 chr3R 21385695 21385963 chr3R 21385776 21386040 7 78 3.5 0.0 1.8 2.5 345 chr3R 21385695 intergenic not near genes chr3R 21385868 intergenic not near genes chr3R 21386040 intergenic not near genes chr3R_7_21385001 chr3R_21385001 RAL-818 1265 chr3R 21442847 21442865 chr3R 21442930 21442949 12 84 3.0 4.5 3.8 2.5 102 chr3R 21442847 intron lbe - chr3R 21442898 intron lbe - chr3R 21442949 intron lbe - chr3R_12_21440001 chr3R_21440001 RAL-818 1266 chr3R 21472013 21472035 chr3R 21472094 21472116 10 81 2.5 3.5 3.0 2.5 103 chr3R 21472013 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472116 intergenic not near genes chr3R_10_21470001 chr3R_21470001 RAL-818 1267 chr3R 21583001 21583016 chr3R 21583097 21583117 8 100 1.5 2.5 2.0 2.7 116 chr3R 21583001 intron InR - chr3R 21583059 intron InR - chr3R 21583117 intron InR - chr3R_8_21580001 chr3R_21580001 RAL-818 1268 chr3R 21586417 21586453 chr3R 21586501 21586537 13 81 4.0 4.5 4.2 2.5 120 chr3R 21586417 intron InR - chr3R 21586477 intron InR - chr3R 21586537 intron InR - chr3R_13_21585001 chr3R_21585001 RAL-818 1269 chr3R 21600256 21600278 chr3R 21600333 21600356 5 78 0.0 3.0 1.5 2.0 100 chr3R 21600256 intron InR - chr3R 21600306 intron InR - chr3R 21600356 intron InR - chr3R_5_21600001 chr3R_21600001 RAL-818 1270 chr3R 21609006 21609026 chr3R 21611640 21611658 NOF 7 2630 4.0 2.0 3.0 1.8 2652 chr3R 21609006 intron InR - chr3R 21610332 intron InR - chr3R 21611658 intron InR - chr3R_7_21610001 chr3R_21610001 RAL-818 1271 chr3R 21761117 21761151 chr3R 21768509 21768528 mdg1 8 7388 7.5 4.0 5.8 1.2 7411 chr3R 21761117 exon CG42335 + chr3R 21764822 intron CG42335 + chr3R 21768528 exon CG42335 + chr3R_8_21760001 chr3R_21760001 RAL-818 1272 chr3R 21861235 21861259 chr3R 21861313 21861333 9 78 2.0 2.0 2.0 3.0 98 chr3R 21861235 intergenic CR45645 -,CR45644 - chr3R 21861284 intergenic CR45645 -,CR45644 - chr3R 21861333 intergenic CR45645 -,CR45644 - chr3R_9_21860001 chr3R_21860001 RAL-818 1273 chr3R 21907534 21907534 chr3R 28831799 28831802 16 6924268 24.0 10.5 17.2 0.9 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_16_25365001 chr3R_25365001 RAL-818 1274 chr3R 8339246 8339247 chr3R 21907535 21907535 4 13568288 16.5 26.5 21.5 0.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-818 1275 chr3R 20177844 20177845 chr3R 21907535 21907535 4 1729690 7.5 26.5 17.0 0.2 1729691 chr3R 20177844 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-818 1276 chr3R 21907535 21907535 chr3R 26659334 26659337 4 4751800 24.5 13.0 18.8 0.2 4751802 chr3R 21907535 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_4_24280001 chr3R_24280001 RAL-818 1277 chr3R 21907535 21907535 chr3R 28831801 28831802 14 6924266 24.5 10.5 17.5 0.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_14_25365001 chr3R_25365001 RAL-818 1278 chr3R 21907536 21907536 chr3R 28831799 28831804 20 6924266 25.0 10.5 17.8 1.1 6924268 chr3R 21907536 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_20_25365001 chr3R_25365001 RAL-818 1279 chr3R 21924011 21924041 chr3R 21924100 21924129 6 87 5.5 2.0 3.8 1.2 118 chr3R 21924011 intergenic not near genes chr3R 21924070 intergenic not near genes chr3R 21924129 intergenic not near genes chr3R_6_21920001 chr3R_21920001 RAL-818 1280 chr3R 21952133 21952167 chr3R 21952218 21952247 9 84 2.5 1.5 2.0 3.0 114 chr3R 21952133 intron Eip93F + chr3R 21952190 intron Eip93F + chr3R 21952247 intron Eip93F + chr3R_9_21950001 chr3R_21950001 RAL-818 1281 chr3R 22040141 22040160 chr3R 22040318 22040337 7 177 0.5 2.0 1.2 3.2 196 chr3R 22040141 intergenic not near genes chr3R 22040239 intergenic not near genes chr3R 22040337 intergenic not near genes chr3R_7_22040001 chr3R_22040001 RAL-818 1282 chr3R 22055563 22055587 chr3R 22055747 22055776 10 188 2.5 2.0 2.2 3.1 213 chr3R 22055563 intron how + chr3R 22055670 intron how + chr3R 22055776 intron how + chr3R_10_22055001 chr3R_22055001 RAL-818 1283 chr3R 22060005 22060038 chr3R 22060189 22060221 9 181 1.0 3.5 2.2 2.8 216 chr3R 22060005 intron how + chr3R 22060113 intron how + chr3R 22060221 intron how + chr3R_9_22060001 chr3R_22060001 RAL-818 1284 chr3R 22108356 22108386 chr3R 22108584 22108595 5 226 2.5 3.0 2.8 1.3 239 chr3R 22108356 intron CG5778 - chr3R 22108476 intron CG5778 - chr3R 22108595 intron CG5778 - chr3R_5_22105001 chr3R_22105001 RAL-818 1285 chr3R 22153581 22153603 chr3R 22153661 22153683 7 80 3.0 6.0 4.5 1.3 102 chr3R 22153581 intron SKIP + chr3R 22153632 intron SKIP + chr3R 22153683 intron SKIP + chr3R_7_22150001 chr3R_22150001 RAL-818 1286 chr3R 22234693 22234711 chr3R 22236012 22236030 pogo 6 1318 0.0 2.0 1.0 3.0 1337 chr3R 22234693 intron SKIP + chr3R 22235362 intron SKIP + chr3R 22236030 intron SKIP + chr3R_6_22235001 chr3R_22235001 RAL-818 1287 chr3R 22346177 22346187 chr3R 22346263 22346273 6 86 3.5 1.0 2.2 1.9 96 chr3R 22346177 intergenic not near genes chr3R 22346225 intergenic not near genes chr3R 22346273 intergenic not near genes chr3R_6_22345001 chr3R_22345001 RAL-818 1288 chr3R 22433095 22433099 chr3R 22433195 22433199 4 99 3.5 5.5 4.5 0.7 104 chr3R 22433095 intron CG13847 - chr3R 22433147 intron CG13847 - chr3R 22433199 intron CG13847 - chr3R_4_22430001 chr3R_22430001 RAL-818 1289 chr3R 22450542 22450577 chr3R 22453182 22453216 NOF 18 2638 3.5 6.0 4.8 3.1 2674 chr3R 22450542 intron CG34376 + chr3R 22451879 intron CG34376 + chr3R 22453216 intron CG34376 + chr3R_18_22450001 chr3R_22450001 RAL-818 1290 chr3R 22538445 22538463 chr3R 22538529 22538548 5 85 2.5 4.5 3.5 1.1 103 chr3R 22538445 intron CG5326 - chr3R 22538496 intron CG5326 - chr3R 22538548 intron CG5326 - chr3R_5_22535001 chr3R_22535001 RAL-818 1291 chr3R 22684203 22684240 chr3R 22684279 22684314 13 75 2.0 4.0 3.0 3.2 111 chr3R 22684203 intergenic not near genes chr3R 22684258 intergenic not near genes chr3R 22684314 intergenic not near genes chr3R_13_22680001 chr3R_22680001 RAL-818 1292 chr3R 22769090 22769121 chr3R 22769166 22769198 8 77 2.5 1.5 2.0 2.7 108 chr3R 22769090 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769144 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769198 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_8_22765001 chr3R_22765001 RAL-818 1293 chr3R 22794517 22794542 chr3R 22794591 22794619 8 73 1.5 2.5 2.0 2.7 102 chr3R 22794517 intergenic CG7029 + chr3R 22794568 intergenic not near genes chr3R 22794619 intergenic not near genes chr3R_8_22790001 chr3R_22790001 RAL-818 1294 chr3R 22797762 22797773 chr3R 22797848 22797859 7 85 5.5 0.0 2.8 1.8 97 chr3R 22797762 intergenic not near genes chr3R 22797810 intergenic not near genes chr3R 22797859 intergenic not near genes chr3R_7_22795001 chr3R_22795001 RAL-818 1295 chr3R 22797776 22797938 chr3R 22797843 22798034 17 90 0.0 0.0 0.0 17.0 258 chr3R 22797776 intergenic not near genes chr3R 22797905 intergenic not near genes chr3R 22798034 intergenic not near genes chr3R_17_22795001 chr3R_22795001 RAL-818 1296 chr3R 22880602 22880614 chr3R 22880679 22880690 5 76 9.0 4.5 6.8 0.6 88 chr3R 22880602 intergenic not near genes chr3R 22880646 intergenic not near genes chr3R 22880690 intergenic not near genes chr3R_5_22880001 chr3R_22880001 RAL-818 1297 chr3R 22880933 22880956 chr3R 22881071 22881094 6 138 2.0 0.5 1.2 2.7 161 chr3R 22880933 intergenic not near genes chr3R 22881014 intergenic not near genes chr3R 22881094 intergenic not near genes chr3R_6_22880001 chr3R_22880001 RAL-818 1298 chr3R 22889016 22889040 chr3R 22889088 22889117 7 76 3.5 5.0 4.2 1.3 101 chr3R 22889016 intergenic not near genes chr3R 22889066 intergenic not near genes chr3R 22889117 intergenic not near genes chr3R_7_22885001 chr3R_22885001 RAL-818 1299 chr3R 22952138 22952148 chr3R 22952216 22952226 6 78 4.5 2.0 3.2 1.4 88 chr3R 22952138 intron klg + chr3R 22952182 intron klg + chr3R 22952226 intron klg + chr3R_6_22950001 chr3R_22950001 RAL-818 1300 chr3R 23090403 23090435 chr3R 23090485 23090513 8 82 3.5 5.0 4.2 1.5 110 chr3R 23090403 intron CG13830 - chr3R 23090458 intron CG13830 - chr3R 23090513 intron CG13830 - chr3R_8_23090001 chr3R_23090001 RAL-818 1301 chr3R 23140330 23140333 chr3R 23140388 23140415 4 72 2.0 2.0 2.0 1.3 85 chr3R 23140330 intron hh - chr3R 23140372 intron hh - chr3R 23140415 intron hh - chr3R_4_23140001 chr3R_23140001 RAL-818 1302 chr3R 23335433 23335465 chr3R 23335511 23335540 6 77 2.5 3.5 3.0 1.5 107 chr3R 23335433 intron pnt - chr3R 23335486 intron pnt - chr3R 23335540 intron pnt - chr3R_6_23335001 chr3R_23335001 RAL-818 1303 chr3R 23346574 23346581 chr3R 23346650 23346655 4 77 4.0 7.5 5.8 0.6 81 chr3R 23346574 intergenic pnt - chr3R 23346614 intergenic pnt - chr3R 23346655 intergenic pnt - chr3R_4_23345001 chr3R_23345001 RAL-818 1304 chr3R 23385591 23385621 chr3R 23385713 23385734 8 120 2.0 0.5 1.2 3.6 143 chr3R 23385591 intergenic not near genes chr3R 23385662 intergenic not near genes chr3R 23385734 intergenic not near genes chr3R_8_23385001 chr3R_23385001 RAL-818 1305 chr3R 23421974 23422009 chr3R 23422059 23422080 10 80 5.5 2.0 3.8 2.1 106 chr3R 23421974 intron CG4374 - chr3R 23422027 intron CG4374 - chr3R 23422080 intron CG4374 - chr3R_10_23420001 chr3R_23420001 RAL-818 1306 chr3R 23476108 23476136 chr3R 23476186 23476213 6 76 2.0 3.0 2.5 1.7 105 chr3R 23476108 intergenic not near genes chr3R 23476160 intergenic not near genes chr3R 23476213 intergenic not near genes chr3R_6_23475001 chr3R_23475001 RAL-818 1307 chr3R 23550099 23550122 chr3R 23550186 23550217 6 90 3.5 4.0 3.8 1.2 118 chr3R 23550099 intergenic not near genes chr3R 23550158 intergenic not near genes chr3R 23550217 intergenic not near genes chr3R_6_23550001 chr3R_23550001 RAL-818 1308 chr3R 23558398 23558425 chr3R 23560179 23560206 Bari1 8 1780 1.0 1.5 1.2 3.6 1808 chr3R 23558398 intron beat-IV + chr3R 23559302 intron beat-IV + chr3R 23560206 intron beat-IV + chr3R_8_23555001 chr3R_23555001 RAL-818 1309 chr3R 23572761 23572780 chr3R 23572880 23572900 8 119 2.5 5.0 3.8 1.7 139 chr3R 23572761 intron beat-IV + chr3R 23572830 intron beat-IV + chr3R 23572900 intron beat-IV + chr3R_8_23570001 chr3R_23570001 RAL-818 1310 chr3R 23639928 23639951 chr3R 23640234 23640257 7 306 4.5 1.0 2.8 1.8 329 chr3R 23639928 intron CG31145 - chr3R 23640092 intron CG31145 - chr3R 23640257 intron CG31145 - chr3R_7_23640001 chr3R_23640001 RAL-818 1311 chr3R 23684695 23684730 chr3R 23685181 23685182 roo 6 473 3.0 4.0 3.5 1.3 487 chr3R 23684695 exon CG18754 + chr3R 23684938 intron CG18754 + chr3R 23685182 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-818 1312 chr3R 23688475 23688500 chr3R 23688565 23688591 7 90 2.5 3.5 3.0 1.8 116 chr3R 23688475 intergenic SPE + chr3R 23688533 intergenic SPE +,CG10254 - chr3R 23688591 intergenic CG10254 -,SPE + chr3R_7_23685001 chr3R_23685001 RAL-818 1313 chr3R 23846121 23846149 chr3R 23846203 23846234 11 83 1.5 3.5 2.5 3.1 113 chr3R 23846121 intron CG34355 + chr3R 23846178 intron CG34355 + chr3R 23846234 intron CG34355 + chr3R_11_23845001 chr3R_23845001 RAL-818 1314 chr3R 23884297 23884319 chr3R 23884381 23884403 8 84 4.0 1.5 2.8 2.1 106 chr3R 23884297 intron Pli - chr3R 23884350 intron Pli - chr3R 23884403 intron Pli - chr3R_8_23880001 chr3R_23880001 RAL-818 1315 chr3R 23944904 23944936 chr3R 23944989 23945017 8 84 1.0 0.5 0.8 4.4 113 chr3R 23944904 intron CG12268 - chr3R 23944960 intron CG12268 - chr3R 23945017 exon CG12268 - chr3R_8_23940001 chr3R_23940001 RAL-818 1316 chr3R 23949051 23949068 chr3R 23949128 23949144 4 77 1.0 1.0 1.0 2.0 93 chr3R 23949051 intergenic not near genes chr3R 23949098 intergenic not near genes chr3R 23949144 intergenic not near genes chr3R_4_23945001 chr3R_23945001 RAL-818 1317 chr3R 24011670 24011680 chr3R 24011753 24011762 6 83 1.5 0.0 0.8 3.3 92 chr3R 24011670 intron KrT95D - chr3R 24011716 intron KrT95D - chr3R 24011762 intron KrT95D - chr3R_6_24010001 chr3R_24010001 RAL-818 1318 chr3R 24072086 24072114 chr3R 24072522 24072535 jockey 6 433 5.5 0.0 2.8 1.6 449 chr3R 24072086 intron 4EHP - chr3R 24072310 intron 4EHP - chr3R 24072535 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-818 1319 chr3R 24076918 24076949 chr3R 24078385 24078414 hobo 5 1467 3.5 5.5 4.5 0.9 1496 chr3R 24076918 intron 4EHP - chr3R 24077666 intron 4EHP - chr3R 24078414 intron 4EHP - chr3R_5_24075001 chr3R_24075001 RAL-818 1320 chr3R 24207213 24207246 chr3R 24212289 24212322 flea 13 5075 6.5 3.0 4.8 2.2 5109 chr3R 24207213 intron twin - chr3R 24209768 intron twin - chr3R 24212322 intron twin - chr3R_13_24205001 chr3R_24205001 RAL-818 1321 chr3R 24392594 24392628 chr3R 24392692 24392726 17 98 2.0 4.0 3.0 4.2 132 chr3R 24392594 intergenic CG13616 + chr3R 24392660 intergenic CG13616 + chr3R 24392726 intergenic CG13616 + chr3R_17_24390001 chr3R_24390001 RAL-818 1322 chr3R 24433346 24433367 chr3R 24433491 24433512 5 145 2.0 1.5 1.8 1.8 166 chr3R 24433346 intron nAChRalpha1 - chr3R 24433429 intron nAChRalpha1 - chr3R 24433512 intron nAChRalpha1 - chr3R_5_24430001 chr3R_24430001 RAL-818 1323 chr3R 24730095 24730115 chr3R 24732473 24732491 Doc 6 2378 2.0 0.0 1.0 3.0 2396 chr3R 24730095 intron tok + chr3R 24731293 intron tok + chr3R 24732491 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-818 1324 chr3R 24739904 24739935 chr3R 24740016 24740047 4 111 1.5 4.0 2.8 1.1 143 chr3R 24739904 intron tok + chr3R 24739976 intron tok + chr3R 24740047 intron tok + chr3R_4_24735001 chr3R_24735001 RAL-818 1325 chr3R 24927128 24927154 chr3R 24931919 24931945 Doc 5 4791 2.0 3.0 2.5 1.4 4817 chr3R 24927128 intergenic Trf4-2 + chr3R 24929536 intergenic not near genes chr3R 24931945 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-818 1326 chr3R 25027544 25027568 chr3R 25027757 25027781 11 213 2.5 4.5 3.5 2.4 237 chr3R 25027544 intron Hr96 + chr3R 25027662 intron Hr96 + chr3R 25027781 intron Hr96 + chr3R_11_25025001 chr3R_25025001 RAL-818 1327 chr3R 25072758 25072778 chr3R 25072850 25072870 7 92 2.5 4.5 3.5 1.6 112 chr3R 25072758 3` UTR CG9996 - chr3R 25072814 3` UTR CG9996 - chr3R 25072870 3` UTR CG9996 - chr3R_7_25070001 chr3R_25070001 RAL-818 1328 chr3R 25188228 25188243 chr3R 25188295 25188319 8 76 3.5 5.0 4.2 1.5 91 chr3R 25188228 intron,intron lobo -,dan + chr3R 25188274 intron,intron lobo -,dan + chr3R 25188319 intron,intron lobo -,dan + chr3R_8_25185001 chr3R_25185001 RAL-818 1329 chr3R 25422069 25422098 chr3R 25422150 25422179 4 81 1.0 0.0 0.5 2.7 110 chr3R 25422069 intron Fur1 - chr3R 25422124 intron Fur1 - chr3R 25422179 intron Fur1 - chr3R_4_25420001 chr3R_25420001 RAL-818 1330 chr3R 25514444 25514448 chr3R 25514525 25514529 4 81 0.0 1.5 0.8 2.2 85 chr3R 25514444 intergenic not near genes chr3R 25514486 intergenic not near genes chr3R 25514529 intergenic not near genes chr3R_4_25510001 chr3R_25510001 RAL-818 1331 chr3R 25604793 25604814 chr3R 25604885 25604906 5 92 2.5 2.0 2.2 1.6 113 chr3R 25604793 3` UTR,intron msi +,ymp - chr3R 25604850 3` UTR,intron msi +,ymp - chr3R 25604906 3` UTR,intron msi +,ymp - chr3R_5_25600001 chr3R_25600001 RAL-818 1332 chr3R 25738643 25738662 chr3R 25738731 25738750 7 87 4.0 1.5 2.8 1.8 107 chr3R 25738643 intron LpR2 - chr3R 25738696 intron LpR2 - chr3R 25738750 intron LpR2 - chr3R_7_25735001 chr3R_25735001 RAL-818 1333 chr3R 25765876 25765909 chr3R 25765954 25765974 11 75 4.5 3.5 4.0 2.2 98 chr3R 25765876 intergenic not near genes chr3R 25765925 intergenic not near genes chr3R 25765974 intergenic not near genes chr3R_11_25765001 chr3R_25765001 RAL-818 1334 chr3R 25801267 25801292 chr3R 25802251 25802276 10 983 2.0 3.5 2.8 2.6 1009 chr3R 25801267 intergenic not near genes chr3R 25801772 intergenic not near genes chr3R 25802276 intergenic not near genes chr3R_10_25800001 chr3R_25800001 RAL-818 1335 chr3R 25832693 25832718 chr3R 25841874 25841899 roo 5 9181 3.0 4.5 3.8 1.0 9206 chr3R 25832693 exon alpha4GT2 + chr3R 25837296 intron alpha4GT2 + chr3R 25841899 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-818 1336 chr3R 25846139 25846162 chr3R 25846236 25846259 7 97 4.5 2.0 3.2 1.7 120 chr3R 25846139 5` UTR CR45654 + chr3R 25846199 5` UTR CR45654 + chr3R 25846259 5` UTR CR45654 + chr3R_7_25845001 chr3R_25845001 RAL-818 1337 chr3R 26108829 26108851 chr3R 26117412 26117418 Tirant 5 8578 3.0 1.5 2.2 1.6 8589 chr3R 26108829 5` UTR CG31324 + chr3R 26113124 intron CG31324 + chr3R 26117418 intron CG31324 + chr3R_5_26110001 chr3R_26110001 RAL-818 1338 chr3R 26121947 26121978 chr3R 26122044 26122074 7 97 0.0 4.5 2.2 2.2 127 chr3R 26121947 intron CG31324 + chr3R 26122010 intron CG31324 + chr3R 26122074 intron CG31324 + chr3R_7_26120001 chr3R_26120001 RAL-818 1339 chr3R 26235492 26235514 chr3R 26235574 26235596 5 81 2.0 4.5 3.2 1.2 104 chr3R 26235492 5` UTR CR42745 + chr3R 26235544 5` UTR CR42745 + chr3R 26235596 5` UTR CR42745 + chr3R_5_26235001 chr3R_26235001 RAL-818 1340 chr3R 26284239 26284256 chr3R 26284346 26284363 4 106 0.0 3.5 1.8 1.4 124 chr3R 26284239 intergenic not near genes chr3R 26284301 intergenic not near genes chr3R 26284363 intergenic not near genes chr3R_4_26280001 chr3R_26280001 RAL-818 1341 chr3R 26292111 26292137 chr3R 26292191 26292217 6 80 1.5 3.0 2.2 1.9 106 chr3R 26292111 intergenic not near genes chr3R 26292164 intergenic not near genes chr3R 26292217 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-818 1342 chr3R 26301843 26301857 chr3R 26301923 26301938 4 80 4.0 1.5 2.8 1.1 95 chr3R 26301843 intergenic not near genes chr3R 26301890 intergenic not near genes chr3R 26301938 intergenic not near genes chr3R_4_26300001 chr3R_26300001 RAL-818 1343 chr3R 26302115 26302146 chr3R 26302322 26302323 9 199 1.5 1.5 1.5 3.6 208 chr3R 26302115 intergenic not near genes chr3R 26302219 intergenic not near genes chr3R 26302323 intergenic not near genes chr3R_9_26300001 chr3R_26300001 RAL-818 1344 chr3R 26376341 26376355 chr3R 26385494 26385514 roo 4 9158 1.5 3.5 2.5 1.1 9173 chr3R 26376341 intergenic not near genes chr3R 26380928 intergenic not near genes chr3R 26385514 intergenic not near genes chr3R_4_26380001 chr3R_26380001 RAL-818 1345 chr3R 26558328 26558359 chr3R 26565639 26565671 Stalker4 11 7309 3.5 3.0 3.2 2.6 7343 chr3R 26558328 intron scrib + chr3R 26562000 intron scrib + chr3R 26565671 intron scrib + chr3R_11_26560001 chr3R_26560001 RAL-818 1346 chr3R 26642731 26642760 chr3R 26643124 26643153 jockey 12 392 3.5 2.5 3.0 3.0 422 chr3R 26642731 intergenic not near genes chr3R 26642942 intergenic not near genes chr3R 26643153 intergenic not near genes chr3R_12_26640001 chr3R_26640001 RAL-818 1347 chr3R 21907534 21907536 chr3R 26659332 26659337 5 4751801 25.0 11.5 18.2 0.3 4751803 chr3R 21907534 intergenic CG6678 + chr3R 24283436 intergenic CR45662 - chr3R 26659337 intron beat-VII - chr3R_5_24280001 chr3R_24280001 RAL-818 1348 chr3R 26674529 26674557 chr3R 26674657 26674686 16 129 0.5 1.5 1.0 8.0 157 chr3R 26674529 intron beat-VII - chr3R 26674608 intron beat-VII - chr3R 26674686 intron beat-VII - chr3R_16_26670001 chr3R_26670001 RAL-818 1349 chr3R 26685861 26685892 chr3R 26686041 26686072 13 177 2.0 3.5 2.8 3.4 211 chr3R 26685861 intergenic not near genes chr3R 26685966 intergenic not near genes chr3R 26686072 intergenic not near genes chr3R_13_26685001 chr3R_26685001 RAL-818 1350 chr3R 26710831 26710856 chr3R 26710915 26710940 6 84 2.0 4.0 3.0 1.5 109 chr3R 26710831 intron amon - chr3R 26710886 intron amon - chr3R 26710940 intron amon - chr3R_6_26710001 chr3R_26710001 RAL-818 1351 chr3R 26770252 26770257 chr3R 26770329 26770334 4 77 2.5 1.5 2.0 1.3 82 chr3R 26770252 intergenic CR45563 + chr3R 26770293 intergenic CR45563 + chr3R 26770334 intergenic not near genes chr3R_4_26770001 chr3R_26770001 RAL-818 1352 chr3R 26810554 26810584 chr3R 26811039 26811067 roo 6 484 2.5 3.0 2.8 1.6 513 chr3R 26810554 intron Tl + chr3R 26810810 intron Tl + chr3R 26811067 intron Tl + chr3R_6_26810001 chr3R_26810001 RAL-818 1353 chr3R 26888197 26888219 chr3R 26888274 26888295 6 76 3.5 4.5 4.0 1.2 98 chr3R 26888197 intron T48 + chr3R 26888246 intron T48 + chr3R 26888295 intron T48 + chr3R_6_26885001 chr3R_26885001 RAL-818 1354 chr3R 26996507 26996539 chr3R 26996712 26996744 5 205 1.5 3.5 2.5 1.4 237 chr3R 26996507 intergenic TwdlC +,RYa-R + chr3R 26996626 intergenic TwdlC +,RYa-R + chr3R 26996744 intergenic RYa-R +,TwdlC + chr3R_5_26995001 chr3R_26995001 RAL-818 1355 chr3R 27028722 27028756 chr3R 27028801 27028835 11 79 2.5 2.0 2.2 3.4 113 chr3R 27028722 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028835 intron RYa-R + chr3R_11_27025001 chr3R_27025001 RAL-818 1356 chr3R 27038439 27038459 chr3R 27039503 27039523 10 1064 3.0 2.0 2.5 2.9 1084 chr3R 27038439 intron RYa-R + chr3R 27038981 intron RYa-R + chr3R 27039523 intron RYa-R + chr3R_10_27035001 chr3R_27035001 RAL-818 1357 chr3R 27140517 27140548 chr3R 27148124 27148157 412 14 7608 4.0 6.0 5.0 2.3 7640 chr3R 27140517 intron CG6051 - chr3R 27144337 intron CG6051 - chr3R 27148157 intron CG6051 - chr3R_14_27140001 chr3R_27140001 RAL-818 1358 chr3R 27206615 27206641 chr3R 27206779 27206808 7 167 1.5 0.5 1.0 3.5 193 chr3R 27206615 intergenic not near genes chr3R 27206712 intergenic not near genes chr3R 27206808 intergenic not near genes chr3R_7_27205001 chr3R_27205001 RAL-818 1359 chr3R 27292282 27292302 chr3R 27292394 27292405 5 109 2.0 3.5 2.8 1.3 123 chr3R 27292282 intergenic CG3348 - chr3R 27292344 intergenic CG3348 - chr3R 27292405 intergenic CG3348 - chr3R_5_27290001 chr3R_27290001 RAL-818 1360 chr3R 27315992 27316013 chr3R 27316068 27316089 8 76 1.5 1.0 1.2 3.6 97 chr3R 27315992 intron CG3339 - chr3R 27316040 intron CG3339 - chr3R 27316089 exon CG3339 - chr3R_8_27315001 chr3R_27315001 RAL-818 1361 chr3R 27329475 27329499 chr3R 27329552 27329576 5 77 1.5 2.0 1.8 1.8 101 chr3R 27329475 intergenic CG3330 - chr3R 27329526 intergenic CG3330 - chr3R 27329576 intergenic CG3330 - chr3R_5_27325001 chr3R_27325001 RAL-818 1362 chr3R 27342795 27342826 chr3R 27351376 27351407 Tirant 9 8580 3.0 4.0 3.5 2.0 8612 chr3R 27342795 intron CG42534 + chr3R 27347101 intron CG42534 + chr3R 27351407 intron CG42534 + chr3R_9_27345001 chr3R_27345001 RAL-818 1363 chr3R 27472616 27472645 chr3R 27472694 27472722 7 77 4.5 2.5 3.5 1.6 106 chr3R 27472616 intergenic not near genes chr3R 27472669 intergenic not near genes chr3R 27472722 intergenic not near genes chr3R_7_27470001 chr3R_27470001 RAL-818 1364 chr3R 27514678 27514689 chr3R 27514806 27514817 4 128 1.0 3.0 2.0 1.3 139 chr3R 27514678 intergenic not near genes chr3R 27514748 intergenic not near genes chr3R 27514817 intergenic not near genes chr3R_4_27510001 chr3R_27510001 RAL-818 1365 chr3R 27627098 27627111 chr3R 27627197 27627211 5 101 3.5 4.5 4.0 1.0 113 chr3R 27627098 intron Tusp + chr3R 27627154 intron Tusp + chr3R 27627211 intron Tusp + chr3R_5_27625001 chr3R_27625001 RAL-818 1366 chr3R 27627113 27627118 chr3R 27627195 27627218 7 95 2.0 4.5 3.2 1.7 105 chr3R 27627113 intron Tusp + chr3R 27627166 intron Tusp + chr3R 27627218 intron Tusp + chr3R_7_27625001 chr3R_27625001 RAL-818 1367 chr3R 27706775 27706810 chr3R 27706852 27706886 9 76 2.0 1.5 1.8 3.2 111 chr3R 27706775 intergenic CG12428 -,CG12877 + chr3R 27706830 intergenic CG12428 -,CG12877 + chr3R 27706886 intergenic CG12428 -,CG12877 + chr3R_9_27705001 chr3R_27705001 RAL-818 1368 chr3R 27725564 27725601 chr3R 27731006 27731043 I-element 9 5442 5.5 2.5 4.0 1.8 5479 chr3R 27725564 intergenic not near genes chr3R 27728304 intergenic not near genes chr3R 27731043 intergenic not near genes chr3R_9_27725001 chr3R_27725001 RAL-818 1369 chr3R 27840250 27840257 chr3R 27840372 27840377 4 122 2.5 0.0 1.2 1.8 127 chr3R 27840250 intron CG34353 - chr3R 27840314 intron CG34353 - chr3R 27840377 intron CG34353 - chr3R_4_27840001 chr3R_27840001 RAL-818 1370 chr3R 27856762 27856789 chr3R 27858240 27858272 hopper2 15 1481 2.5 2.0 2.2 4.7 1510 chr3R 27856762 intron CG34353 - chr3R 27857517 intron CG34353 - chr3R 27858272 intron CG34353 - chr3R_15_27855001 chr3R_27855001 RAL-818 1371 chr3R 27862961 27862984 chr3R 27868263 27868289 Transpac 7 5304 2.5 1.0 1.8 2.5 5328 chr3R 27862961 intron CG34353 - chr3R 27865625 intron CG34353 - chr3R 27868289 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-818 1372 chr3R 27875700 27875723 chr3R 27882754 27882778 297 9 7055 2.5 6.0 4.2 1.7 7078 chr3R 27875700 intron CG34353 - chr3R 27879239 intron CG34353 - chr3R 27882778 intron CG34353 - chr3R_9_27875001 chr3R_27875001 RAL-818 1373 chr3R 27904529 27904564 chr3R 27904622 27904657 7 90 1.0 2.0 1.5 2.8 128 chr3R 27904529 intron CG34353 - chr3R 27904593 intron CG34353 - chr3R 27904657 intron CG34353 - chr3R_7_27900001 chr3R_27900001 RAL-818 1374 chr3R 27909325 27909337 chr3R 27909448 27909460 4 122 2.5 3.5 3.0 1.0 135 chr3R 27909325 intergenic not near genes chr3R 27909392 intergenic not near genes chr3R 27909460 intergenic not near genes chr3R_4_27905001 chr3R_27905001 RAL-818 1375 chr3R 28017955 28017983 chr3R 28018041 28018072 8 89 2.5 2.5 2.5 2.3 117 chr3R 28017955 intergenic not near genes chr3R 28018014 intergenic not near genes chr3R 28018072 intergenic not near genes chr3R_8_28015001 chr3R_28015001 RAL-818 1376 chr3R 28065053 28065068 chr3R 28065352 28065363 5 298 2.5 0.5 1.5 2.0 310 chr3R 28065053 intron CG34362 + chr3R 28065208 intron CG34362 + chr3R 28065363 intron CG34362 + chr3R_5_28065001 chr3R_28065001 RAL-818 1377 chr3R 28065069 28065082 chr3R 28065350 28065381 6 296 1.5 0.0 0.8 3.3 312 chr3R 28065069 intron CG34362 + chr3R 28065225 intron CG34362 + chr3R 28065381 intron CG34362 + chr3R_6_28065001 chr3R_28065001 RAL-818 1378 chr3R 28068494 28068526 chr3R 28073936 28073965 I-element 10 5442 4.5 3.5 4.0 2.0 5471 chr3R 28068494 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073965 intron CG34362 + chr3R_10_28070001 chr3R_28070001 RAL-818 1379 chr3R 28173671 28173682 chr3R 28181101 28181112 mdg1 6 7430 3.0 1.0 2.0 2.0 7441 chr3R 28173671 intron CG34354 + chr3R 28177392 intron CG34354 + chr3R 28181112 intron CG34354 + chr3R_6_28175001 chr3R_28175001 RAL-818 1380 chr3R 28215815 28215850 chr3R 28215892 28215927 11 74 1.0 2.0 1.5 4.4 112 chr3R 28215815 intron CG34354 + chr3R 28215871 intron CG34354 + chr3R 28215927 intron CG34354 + chr3R_11_28215001 chr3R_28215001 RAL-818 1381 chr3R 28253337 28253365 chr3R 28255847 28255875 jockey 9 2510 3.5 2.5 3.0 2.2 2538 chr3R 28253337 intergenic not near genes chr3R 28254606 intergenic not near genes chr3R 28255875 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-818 1382 chr3R 28282987 28283019 chr3R 28283616 28283648 7 629 2.0 1.5 1.8 2.5 661 chr3R 28282987 exon CG34436 + chr3R 28283318 exon CG34436 + chr3R 28283648 intergenic CG34437 +,CG34436 + chr3R_7_28280001 chr3R_28280001 RAL-818 1383 chr3R 28302112 28302132 chr3R 28302551 28302571 jockey 7 438 2.0 3.5 2.8 1.8 459 chr3R 28302112 intergenic not near genes chr3R 28302342 intergenic not near genes chr3R 28302571 intergenic not near genes chr3R_7_28300001 chr3R_28300001 RAL-818 1384 chr3R 28345653 28345667 chr3R 28345728 28345743 4 76 1.0 2.5 1.8 1.4 90 chr3R 28345653 intergenic Moca-cyp + chr3R 28345698 intergenic not near genes chr3R 28345743 intergenic not near genes chr3R_4_28345001 chr3R_28345001 RAL-818 1385 chr3R 28407708 28407741 chr3R 28407794 28407827 7 84 2.0 3.0 2.5 2.0 119 chr3R 28407708 intergenic not near genes chr3R 28407768 intergenic not near genes chr3R 28407827 intergenic not near genes chr3R_7_28405001 chr3R_28405001 RAL-818 1386 chr3R 28426494 28426502 chr3R 28426579 28426588 4 86 0.5 7.5 4.0 0.8 94 chr3R 28426494 intron beat-VI + chr3R 28426541 intron beat-VI + chr3R 28426588 intron beat-VI + chr3R_4_28425001 chr3R_28425001 RAL-818 1387 chr3R 28478430 28478448 chr3R 28478496 28478529 7 75 2.0 1.0 1.5 2.8 99 chr3R 28478430 intergenic not near genes chr3R 28478480 intergenic not near genes chr3R 28478529 intergenic not near genes chr3R_7_28475001 chr3R_28475001 RAL-818 1388 chr3R 28484353 28484375 chr3R 28486270 28486292 51 1918 33.0 69.0 51.0 1.0 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_51_28485001 chr3R_28485001 RAL-818 1389 chr3R 28594102 28594127 chr3R 28594181 28594206 4 79 0.0 2.0 1.0 2.0 104 chr3R 28594102 5` UTR CR43440 + chr3R 28594154 5` UTR CR43440 + chr3R 28594206 5` UTR CR43440 + chr3R_4_28590001 chr3R_28590001 RAL-818 1390 chr3R 28662372 28662396 chr3R 28662527 28662551 8 155 2.5 1.5 2.0 2.7 179 chr3R 28662372 intergenic not near genes chr3R 28662462 intergenic not near genes chr3R 28662551 intergenic not near genes chr3R_8_28660001 chr3R_28660001 RAL-818 1391 chr3R 28702434 28702466 chr3R 28702518 28702567 8 93 1.5 0.0 0.8 4.4 133 chr3R 28702434 intron htt + chr3R 28702500 intron htt + chr3R 28702567 intron htt + chr3R_8_28700001 chr3R_28700001 RAL-818 1392 chr3R 28792874 28792895 chr3R 28797969 28797989 jockey 6 5094 2.0 3.0 2.5 1.7 5115 chr3R 28792874 intergenic not near genes chr3R 28795432 intergenic not near genes chr3R 28797989 intergenic not near genes chr3R_6_28795001 chr3R_28795001 RAL-818 1393 chr3R 28830888 28830922 chr3R 28830966 28830997 8 76 3.5 0.5 2.0 2.7 109 chr3R 28830888 intron WASp - chr3R 28830942 intron WASp - chr3R 28830997 intron WASp - chr3R_8_28830001 chr3R_28830001 RAL-818 1394 chr3R 21907534 21907536 chr3R 28831797 28831802 65 6924267 25.0 11.0 18.0 3.4 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_65_25365001 chr3R_25365001 RAL-818 1395 chr3R 28989005 28989020 chr3R 28989084 28989099 4 79 0.0 3.0 1.5 1.6 94 chr3R 28989005 intergenic not near genes chr3R 28989052 intergenic not near genes chr3R 28989099 intergenic not near genes chr3R_4_28985001 chr3R_28985001 RAL-818 1396 chr3R 29011966 29011995 chr3R 29012078 29012105 5 112 1.0 0.0 0.5 3.3 139 chr3R 29011966 intron wat - chr3R 29012036 intron wat - chr3R 29012105 intron wat - chr3R_5_29010001 chr3R_29010001 RAL-818 1397 chr3R 29023905 29023921 chr3R 29023975 29024000 9 77 2.0 4.5 3.2 2.1 95 chr3R 29023905 5` UTR CR45567 + chr3R 29023952 5` UTR CR45567 + chr3R 29024000 5` UTR CR45567 + chr3R_9_29020001 chr3R_29020001 RAL-818 1398 chr3R 29032747 29032778 chr3R 29032824 29032853 9 73 3.5 0.5 2.0 3.0 106 chr3R 29032747 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032800 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032853 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_9_29030001 chr3R_29030001 RAL-818 1399 chr3R 29070064 29070076 chr3R 29070145 29070157 6 81 3.5 2.0 2.8 1.6 93 chr3R 29070064 intron CG11873 + chr3R 29070110 intron CG11873 + chr3R 29070157 intron CG11873 + chr3R_6_29070001 chr3R_29070001 RAL-818 1400 chr3R 29213063 29213091 chr3R 29213146 29213174 13 83 3.5 2.0 2.8 3.4 111 chr3R 29213063 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213174 intergenic not near genes chr3R_13_29210001 chr3R_29210001 RAL-818 1401 chr3R 29239227 29239247 chr3R 29245518 29245528 5 6289 0.0 7.5 3.8 1.0 6301 chr3R 29239227 exon CG31427 - chr3R 29242378 exon CG31445 - chr3R 29245528 exon SP1029 - chr3R_5_29240001 chr3R_29240001 RAL-818 1402 chr3R 29249622 29249640 chr3R 29249709 29249727 5 87 1.0 2.5 1.8 1.8 105 chr3R 29249622 intron SP1029 - chr3R 29249674 intron SP1029 - chr3R 29249727 intron SP1029 - chr3R_5_29245001 chr3R_29245001 RAL-818 1403 chr3R 29256267 29256295 chr3R 29256346 29256375 18 79 2.5 3.0 2.8 4.7 108 chr3R 29256267 intergenic CG45544 +,stg - chr3R 29256321 intergenic CG45544 + chr3R 29256375 intergenic CG45544 + chr3R_18_29255001 chr3R_29255001 RAL-818 1404 chr3R 29319828 29319857 chr3R 29320147 29320175 jockey 6 319 2.5 4.0 3.2 1.4 347 chr3R 29319828 intergenic Cnx99A - chr3R 29320002 intergenic Cnx99A - chr3R 29320175 intergenic not near genes chr3R_6_29320001 chr3R_29320001 RAL-818 1405 chr3R 29332286 29332308 chr3R 29332363 29332385 6 77 2.5 2.5 2.5 1.7 99 chr3R 29332286 intergenic not near genes chr3R 29332336 intergenic not near genes chr3R 29332385 intergenic not near genes chr3R_6_29330001 chr3R_29330001 RAL-818 1406 chr3R 29335593 29335608 chr3R 29335674 29335690 9 82 1.5 6.0 3.8 1.9 97 chr3R 29335593 intergenic not near genes chr3R 29335642 intergenic not near genes chr3R 29335690 intergenic not near genes chr3R_9_29335001 chr3R_29335001 RAL-818 1407 chr3R 29406618 29406631 chr3R 29407903 29407917 jockey 8 1285 4.5 2.5 3.5 1.8 1299 chr3R 29406618 intron Ptp99A + chr3R 29407268 intron Ptp99A + chr3R 29407917 intron Ptp99A + chr3R_8_29405001 chr3R_29405001 RAL-818 1408 chr3R 29433602 29433635 chr3R 29433693 29433726 9 90 4.5 4.0 4.2 1.7 124 chr3R 29433602 intron Ptp99A + chr3R 29433664 intron Ptp99A + chr3R 29433726 intron Ptp99A + chr3R_9_29430001 chr3R_29430001 RAL-818 1409 chr3R 29446992 29447022 chr3R 29447079 29447109 9 86 5.0 5.0 5.0 1.5 117 chr3R 29446992 intron Ptp99A + chr3R 29447050 intron Ptp99A + chr3R 29447109 intron Ptp99A + chr3R_9_29445001 chr3R_29445001 RAL-818 1410 chr3R 29455639 29455672 chr3R 29455721 29455741 13 81 3.5 1.5 2.5 3.7 102 chr3R 29455639 intron Ptp99A + chr3R 29455690 intron Ptp99A + chr3R 29455741 intron Ptp99A + chr3R_13_29455001 chr3R_29455001 RAL-818 1411 chr3R 29472007 29472034 chr3R 29472100 29472127 9 92 6.0 3.5 4.8 1.6 120 chr3R 29472007 intron Ptp99A + chr3R 29472067 intron Ptp99A + chr3R 29472127 intron Ptp99A + chr3R_9_29470001 chr3R_29470001 RAL-818 1412 chr3R 29575840 29575848 chr3R 29575922 29575931 4 82 3.5 0.0 1.8 1.4 91 chr3R 29575840 intergenic not near genes chr3R 29575886 intergenic not near genes chr3R 29575931 intergenic not near genes chr3R_4_29575001 chr3R_29575001 RAL-818 1413 chr3R 29590379 29590404 chr3R 29590472 29590497 14 93 0.0 3.5 1.8 5.0 118 chr3R 29590379 intron CG31041 - chr3R 29590438 intron CG31041 - chr3R 29590497 intron CG31041 - chr3R_14_29590001 chr3R_29590001 RAL-818 1414 chr3R 29655650 29655674 chr3R 29655729 29655753 9 79 3.0 0.0 1.5 3.6 103 chr3R 29655650 intron Dop1R2 - chr3R 29655702 intron Dop1R2 - chr3R 29655753 intron Dop1R2 - chr3R_9_29655001 chr3R_29655001 RAL-818 1415 chr3R 29738265 29738301 chr3R 29739732 29739763 hobo 9 1466 1.5 4.5 3.0 2.2 1498 chr3R 29738265 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739763 5` UTR CG1969 + chr3R_9_29735001 chr3R_29735001 RAL-818 1416 chr3R 29745643 29745675 chr3R 29745719 29745728 10 70 4.5 2.0 3.2 2.4 85 chr3R 29745643 exon IntS11 + chr3R 29745686 intron IntS11 + chr3R 29745728 intron IntS11 + chr3R_10_29745001 chr3R_29745001 RAL-818 1417 chr3R 29882018 29882052 chr3R 29891175 29891209 roo 8 9157 4.5 4.5 4.5 1.5 9191 chr3R 29882018 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-818 1418 chr3R 30032173 30032180 chr3R 30032252 30032259 4 78 2.5 2.0 2.2 1.2 86 chr3R 30032173 intron Axn + chr3R 30032216 intron Axn + chr3R 30032259 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-818 1419 chr3R 30082992 30083022 chr3R 30083068 30083096 8 74 1.5 0.5 1.0 4.0 104 chr3R 30082992 intron sima + chr3R 30083044 intron sima + chr3R 30083096 intron sima + chr3R_8_30080001 chr3R_30080001 RAL-818 1420 chr3R 30084851 30084884 chr3R 30086317 30086351 hobo 12 1466 3.5 3.0 3.2 2.9 1500 chr3R 30084851 intron sima + chr3R 30085601 intron sima + chr3R 30086351 intron sima + chr3R_12_30085001 chr3R_30085001 RAL-818 1421 chr3R 30170759 30170792 chr3R 30170846 30170879 16 87 5.5 5.0 5.2 2.6 120 chr3R 30170759 intron CG31028 - chr3R 30170819 intron CG31028 - chr3R 30170879 intron CG31028 - chr3R_16_30170001 chr3R_30170001 RAL-818 1422 chr3R 30177744 30177775 chr3R 30177861 30177892 8 115 1.5 2.5 2.0 2.7 148 chr3R 30177744 intergenic CG1983 -,CG15530 + chr3R 30177818 intergenic CG15530 +,CG1983 - chr3R 30177892 5` UTR CG15530 + chr3R_8_30175001 chr3R_30175001 RAL-818 1423 chr3R 30181103 30181136 chr3R 30181179 30181197 8 71 2.5 3.5 3.0 2.0 94 chr3R 30181103 3` UTR Bet5 + chr3R 30181150 3` UTR Bet5 + chr3R 30181197 3` UTR Bet5 + chr3R_8_30180001 chr3R_30180001 RAL-818 1424 chr3R 30183216 30183232 chr3R 30183325 30183340 5 109 2.5 2.0 2.2 1.6 124 chr3R 30183216 intergenic not near genes chr3R 30183278 intergenic not near genes chr3R 30183340 intergenic not near genes chr3R_5_30180001 chr3R_30180001 RAL-818 1425 chr3R 30238783 30238789 chr3R 30239957 30239963 1360 4 1174 0.0 2.5 1.2 1.8 1180 chr3R 30238783 intergenic not near genes chr3R 30239373 intergenic not near genes chr3R 30239963 intergenic not near genes chr3R_4_30235001 chr3R_30235001 RAL-818 1426 chr3R 30268248 30268441 chr3R 30268325 30268522 8 79 2.0 2.0 2.0 2.7 274 chr3R 30268248 intergenic not near genes chr3R 30268385 intergenic not near genes chr3R 30268522 intergenic not near genes chr3R_8_30265001 chr3R_30265001 RAL-818 1427 chr3R 30317328 30317354 chr3R 30324920 30324945 roo 6 7592 1.0 2.0 1.5 2.4 7617 chr3R 30317328 intron hdc + chr3R 30321136 intron hdc + chr3R 30324945 intron hdc + chr3R_6_30320001 chr3R_30320001 RAL-818 1428 chr3R 30396215 30396247 chr3R 30404481 30404513 roo 13 8266 2.5 3.0 2.8 3.4 8298 chr3R 30396215 intergenic not near genes chr3R 30400364 intergenic not near genes chr3R 30404513 5` UTR CR45570 + chr3R_13_30400001 chr3R_30400001 RAL-818 1429 chr3R 30456391 30456421 chr3R 30456471 30456501 6 80 0.5 2.5 1.5 2.4 110 chr3R 30456391 intergenic CG2224 - chr3R 30456446 3` UTR CG2224 - chr3R 30456501 3` UTR CG2224 - chr3R_6_30455001 chr3R_30455001 RAL-818 1430 chr3R 30458012 30458038 chr3R 30458091 30458118 9 79 6.0 2.5 4.2 1.7 106 chr3R 30458012 intron CG2224 - chr3R 30458065 intron CG2224 - chr3R 30458118 intron CG2224 - chr3R_9_30455001 chr3R_30455001 RAL-818 1431 chr3R 30466701 30466728 chr3R 30466781 30466808 7 80 2.0 3.0 2.5 2.0 107 chr3R 30466701 intron PH4alphaEFB + chr3R 30466754 intron PH4alphaEFB + chr3R 30466808 intron PH4alphaEFB + chr3R_7_30465001 chr3R_30465001 RAL-818 1432 chr3R 30480474 30480508 chr3R 30482942 30482976 jockey 7 2468 2.0 1.5 1.8 2.5 2502 chr3R 30480474 intron PH4alphaEFB + chr3R 30481725 intron PH4alphaEFB + chr3R 30482976 intron PH4alphaEFB + chr3R_7_30480001 chr3R_30480001 RAL-818 1433 chr3R 30567316 30567337 chr3R 30567405 30567427 9 88 4.5 0.0 2.2 2.8 111 chr3R 30567316 intron tmod + chr3R 30567372 intron tmod + chr3R 30567427 intron tmod + chr3R_9_30565001 chr3R_30565001 RAL-818 1434 chr3R 30571709 30571716 chr3R 30571789 30571796 5 80 0.0 1.5 0.8 2.8 87 chr3R 30571709 intron tmod + chr3R 30571752 intron tmod + chr3R 30571796 intron tmod + chr3R_5_30570001 chr3R_30570001 RAL-818 1435 chr3R 30620927 30620946 chr3R 30621082 30621100 7 155 1.0 1.5 1.2 3.2 173 chr3R 30620927 intron CG44954 - chr3R 30621014 intron CG44954 - chr3R 30621100 intron CG44954 - chr3R_7_30620001 chr3R_30620001 RAL-818 1436 chr3R 30627611 30627626 chr3R 30627691 30627706 6 79 6.0 5.5 5.8 0.9 95 chr3R 30627611 exon CG2267 - chr3R 30627658 exon CG2267 - chr3R 30627706 exon CG2267 - chr3R_6_30625001 chr3R_30625001 RAL-818 1437 chr3R 30627627 30627637 chr3R 30627689 30627716 9 75 3.5 5.5 4.5 1.6 89 chr3R 30627627 exon CG2267 - chr3R 30627672 exon CG2267 - chr3R 30627716 exon CG2267 - chr3R_9_30625001 chr3R_30625001 RAL-818 1438 chr3R 30679523 30679549 chr3R 30686988 30687018 blood 4 7468 3.5 3.0 3.2 1.0 7495 chr3R 30679523 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687018 intergenic not near genes chr3R_4_30680001 chr3R_30680001 RAL-818 1439 chr3R 30690168 30690183 chr3R 30690250 30690267 5 82 5.0 6.5 5.8 0.7 99 chr3R 30690168 intergenic Spn100A + chr3R 30690218 intergenic Spn100A + chr3R 30690267 intergenic Spn100A + chr3R_5_30690001 chr3R_30690001 RAL-818 1440 chr3R 30743919 30743935 chr3R 30744192 30744212 6 276 3.5 1.0 2.2 1.9 293 chr3R 30743919 3` UTR CG15543 + chr3R 30744066 3` UTR CG15543 + chr3R 30744212 3` UTR CG15543 + chr3R_6_30740001 chr3R_30740001 RAL-818 1441 chr3R 30818811 30818835 chr3R 30820376 30820400 1360 4 1564 2.0 1.0 1.5 1.6 1589 chr3R 30818811 intron cindr + chr3R 30819606 intron cindr + chr3R 30820400 intron cindr + chr3R_4_30815001 chr3R_30815001 RAL-818 1442 chr3R 30850242 30850263 chr3R 30850334 30850352 4 91 1.5 0.5 1.0 2.0 110 chr3R 30850242 intergenic not near genes chr3R 30850297 intergenic not near genes chr3R 30850352 intergenic not near genes chr3R_4_30850001 chr3R_30850001 RAL-818 1443 chr3R 30900523 30900554 chr3R 30900603 30900633 9 80 2.5 1.5 2.0 3.0 110 chr3R 30900523 3` UTR Cyp4c3 + chr3R 30900578 3` UTR Cyp4c3 + chr3R 30900633 3` UTR Cyp4c3 + chr3R_9_30900001 chr3R_30900001 RAL-818 1444 chr3R 30948080 30948109 chr3R 30948270 30948300 9 191 2.0 2.0 2.0 3.0 220 chr3R 30948080 intergenic not near genes chr3R 30948190 intergenic not near genes chr3R 30948300 intergenic not near genes chr3R_9_30945001 chr3R_30945001 RAL-818 1445 chr3R 31018279 31018299 chr3R 31018366 31018386 6 87 2.5 2.0 2.2 1.9 107 chr3R 31018279 intergenic not near genes chr3R 31018332 intergenic not near genes chr3R 31018386 intergenic not near genes chr3R_6_31015001 chr3R_31015001 RAL-818 1446 chr3R 31026488 31026506 chr3R 31026569 31026587 5 81 4.5 2.0 3.2 1.2 99 chr3R 31026488 intergenic not near genes chr3R 31026538 intergenic not near genes chr3R 31026587 intergenic not near genes chr3R_5_31025001 chr3R_31025001 RAL-818 1447 chr3R 31031608 31031614 chr3R 31031736 31031742 4 128 0.5 7.5 4.0 0.8 134 chr3R 31031608 intergenic not near genes chr3R 31031675 intergenic not near genes chr3R 31031742 intergenic not near genes chr3R_4_31030001 chr3R_31030001 RAL-818 1448 chr3R 31074235 31074245 chr3R 31081835 31081845 springer 7 7599 6.0 3.0 4.5 1.3 7610 chr3R 31074235 intron Sox100B + chr3R 31078040 intron Sox100B + chr3R 31081845 intron Sox100B + chr3R_7_31075001 chr3R_31075001 RAL-818 1449 chr3R 31150267 31150275 chr3R 31150347 31150355 6 78 6.0 4.5 5.2 1.0 88 chr3R 31150267 intron Gycbeta100B + chr3R 31150311 intron Gycbeta100B + chr3R 31150355 intron Gycbeta100B + chr3R_6_31150001 chr3R_31150001 RAL-818 1450 chr3R 31150279 31150296 chr3R 31150344 31150350 4 64 3.5 3.5 3.5 0.9 71 chr3R 31150279 intron Gycbeta100B + chr3R 31150314 intron Gycbeta100B + chr3R 31150350 intron Gycbeta100B + chr3R_4_31150001 chr3R_31150001 RAL-818 1451 chr3R 31262856 31262878 chr3R 31262962 31262985 7 107 3.0 1.5 2.2 2.2 129 chr3R 31262856 exon CG18673 + chr3R 31262920 exon CG18673 + chr3R 31262985 intron CG18673 + chr3R_7_31260001 chr3R_31260001 RAL-818 1452 chr3R 31279375 31279398 chr3R 31285566 31285589 diver 6 6188 3.5 1.5 2.5 1.7 6214 chr3R 31279375 intergenic not near genes chr3R 31282482 intergenic not near genes chr3R 31285589 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-818 1453 chr3R 31412708 31412736 chr3R 31412800 31412829 6 93 6.5 2.5 4.5 1.1 121 chr3R 31412708 intron Gprk2 + chr3R 31412768 intron Gprk2 + chr3R 31412829 intron Gprk2 + chr3R_6_31410001 chr3R_31410001 RAL-818 1454 chr3R 31413089 31413121 chr3R 31418289 31418321 copia 9 5200 3.0 0.5 1.8 3.2 5232 chr3R 31413089 intron Gprk2 + chr3R 31415705 intron Gprk2 + chr3R 31418321 intron Gprk2 + chr3R_9_31415001 chr3R_31415001 RAL-818 1455 chr3R 31435371 31435390 chr3R 31435519 31435541 6 151 4.5 1.5 3.0 1.5 170 chr3R 31435371 intron Gprk2 + chr3R 31435456 intron Gprk2 + chr3R 31435541 intron Gprk2 + chr3R_6_31435001 chr3R_31435001 RAL-818 1456 chr3R 31486166 31486179 chr3R 31486247 31486259 4 81 3.5 6.0 4.8 0.7 93 chr3R 31486166 intergenic not near genes chr3R 31486212 intergenic not near genes chr3R 31486259 intergenic not near genes chr3R_4_31485001 chr3R_31485001 RAL-818 1457 chr3R 31610118 31610138 chr3R 31610204 31610224 4 86 1.5 0.5 1.0 2.0 106 chr3R 31610118 intron CycG - chr3R 31610171 intron CycG - chr3R 31610224 intron CycG - chr3R_4_31610001 chr3R_31610001 RAL-818 1458 chr3R 31691533 31691563 chr3R 31696297 31696329 Doc 11 4766 3.5 4.0 3.8 2.3 4796 chr3R 31691533 intergenic not near genes chr3R 31693931 intergenic not near genes chr3R 31696329 intergenic not near genes chr3R_11_31690001 chr3R_31690001 RAL-818 1459 chr3R 31699743 31699753 chr3R 31699809 31699834 5 78 2.5 6.0 4.2 1.0 91 chr3R 31699743 intergenic not near genes chr3R 31699788 intergenic not near genes chr3R 31699834 intergenic not near genes chr3R_5_31695001 chr3R_31695001 RAL-818 1460 chr3R 31884672 31884679 chr3R 31884748 31884756 6 76 1.0 4.5 2.8 1.6 84 chr3R 31884672 intron heph - chr3R 31884714 intron heph - chr3R 31884756 intron heph - chr3R_6_31880001 chr3R_31880001 RAL-818 1461 chr3R 31908692 31908721 chr3R 31908778 31908807 9 86 1.5 2.0 1.8 3.2 115 chr3R 31908692 intron heph - chr3R 31908750 intron heph - chr3R 31908807 intron heph - chr3R_9_31905001 chr3R_31905001 RAL-818 1462 chr3R 31911680 31911704 chr3R 31911763 31911787 6 84 4.0 3.5 3.8 1.2 107 chr3R 31911680 intron heph - chr3R 31911734 intron heph - chr3R 31911787 intron heph - chr3R_6_31910001 chr3R_31910001 RAL-818 1463 chr3R 31919749 31919775 chr3R 31919844 31919870 5 93 2.0 5.0 3.5 1.1 121 chr3R 31919749 intron heph - chr3R 31919810 intron heph - chr3R 31919870 intron heph - chr3R_5_31915001 chr3R_31915001 RAL-818 1464 chr3R 31946026 31946052 chr3R 31946115 31946136 4 84 1.0 3.0 2.0 1.3 110 chr3R 31946026 intron heph - chr3R 31946081 intron heph - chr3R 31946136 intron heph - chr3R_4_31945001 chr3R_31945001 RAL-818 1465 chr3R 31954425 31954445 chr3R 31954512 31954518 4 79 1.5 1.5 1.5 1.6 93 chr3R 31954425 intron heph - chr3R 31954472 intron heph - chr3R 31954518 intron heph - chr3R_4_31950001 chr3R_31950001 RAL-818 1466 chr3R 31957983 31958015 chr3R 31958065 31958097 5 82 1.0 1.5 1.2 2.3 114 chr3R 31957983 intron heph - chr3R 31958040 intron heph - chr3R 31958097 intron heph - chr3R_5_31955001 chr3R_31955001 RAL-818 1467 chr3R 31975034 31975060 chr3R 31975125 31975151 7 91 1.5 0.5 1.0 3.5 117 chr3R 31975034 intron heph - chr3R 31975092 intron heph - chr3R 31975151 intron heph - chr3R_7_31975001 chr3R_31975001 RAL-818 1468 chr3R 31978563 31978586 chr3R 31978749 31978776 9 187 2.5 3.0 2.8 2.4 213 chr3R 31978563 intron,intron heph -,CG2003 + chr3R 31978670 intron,intron heph -,CG2003 + chr3R 31978776 intron,intron heph -,CG2003 + chr3R_9_31975001 chr3R_31975001 RAL-818 1469 chr3R 31997991 31998025 chr3R 32005461 32005495 blood 11 7470 1.5 1.0 1.2 5.0 7504 chr3R 31997991 intron heph - chr3R 32001743 intron heph - chr3R 32005495 intron heph - chr3R_11_32000001 chr3R_32000001 RAL-818 1470 chr4 82375 82405 chr4 82496 82526 6 121 0.5 0.5 0.5 4.0 151 chr4 82375 intron pan + chr4 82450 intron pan + chr4 82526 intron pan + chr4_6_80001 chr4_80001 RAL-818 1471 chr4 671603 671636 chr4 680186 680219 Tirant 10 8582 2.0 3.5 2.8 2.6 8616 chr4 671603 intron CG11360 + chr4 675911 intron CG11360 + chr4 680219 intron CG11360 + chr4_10_675001 chr4_675001 RAL-818 1472 chr4 852907 852917 chr4 853271 853278 4 363 0.0 2.5 1.2 1.8 371 chr4 852907 intergenic not near genes chr4 853092 intergenic not near genes chr4 853278 intergenic CG11148 - chr4_4_850001 chr4_850001 RAL-818 1473 chrX 428435 428451 chrX 434620 434636 3S18 4 6185 3.5 1.0 2.2 1.2 6201 chrX 428435 intron CG32816 - chrX 431536 intron CG32816 - chrX 434636 intron CG32816 - chrX_4_430001 chrX_430001 RAL-818 1474 chrX 551421 551454 chrX 558983 559016 412 11 7560 3.0 2.5 2.8 2.9 7595 chrX 551421 intron Appl + chrX 555218 intron Appl + chrX 559016 intron Appl + chrX_11_555001 chrX_555001 RAL-818 1475 chrX 726086 726114 chrX 726170 726195 5 82 0.5 3.0 1.8 1.8 109 chrX 726086 intron sdk + chrX 726140 intron sdk + chrX 726195 intron sdk + chrX_5_725001 chrX_725001 RAL-818 1476 chrX 802299 802320 chrX 802362 802367 9 64 4.5 2.0 3.2 2.1 68 chrX 802299 exon CG13359 - chrX 802333 exon CG13359 - chrX 802367 exon CG13359 - chrX_9_800001 chrX_800001 RAL-818 1477 chrX 827602 827620 chrX 835394 835411 roo 12 7792 5.0 0.5 2.8 3.2 7809 chrX 827602 intron CG43867 - chrX 831506 intron CG43867 - chrX 835411 intron CG43867 - chrX_12_830001 chrX_830001 RAL-818 1478 chrX 906703 906719 chrX 908492 908508 S-element 7 1789 4.0 7.5 5.8 1.0 1805 chrX 906703 intron CG43867 - chrX 907606 intron CG43867 - chrX 908508 intron CG43867 - chrX_7_905001 chrX_905001 RAL-818 1479 chrX 918372 918407 chrX 918456 918490 9 83 3.5 2.0 2.8 2.4 118 chrX 918372 intron CG43867 - chrX 918431 intron CG43867 - chrX 918490 intron CG43867 - chrX_9_915001 chrX_915001 RAL-818 1480 chrX 1051075 1051089 chrX 1051152 1051167 8 78 8.0 7.0 7.5 0.9 92 chrX 1051075 intron CR44779 + chrX 1051121 intron CR44779 + chrX 1051167 intron CR44779 + chrX_8_1050001 chrX_1050001 RAL-818 1481 chrX 1163296 1163329 chrX 1163374 1163407 9 78 2.5 2.5 2.5 2.6 111 chrX 1163296 intergenic CG34320 - chrX 1163352 intergenic CG34320 - chrX 1163407 intergenic CG34320 - chrX_9_1160001 chrX_1160001 RAL-818 1482 chrX 1169762 1169788 chrX 1169845 1169873 10 83 2.5 4.5 3.5 2.2 111 chrX 1169762 intergenic not near genes chrX 1169818 intergenic not near genes chrX 1169873 intergenic not near genes chrX_10_1165001 chrX_1165001 RAL-818 1483 chrX 1238792 1238823 chrX 1240960 1240992 17 2168 11.0 7.0 9.0 1.7 2200 chrX 1238792 exon CG11403 - chrX 1239892 intergenic CG11403 - chrX 1240992 intergenic not near genes chrX_17_1235001 chrX_1235001 RAL-818 1484 chrX 1357778 1357801 chrX 1367948 1367971 Doc 5 10170 4.5 1.5 3.0 1.2 10193 chrX 1357778 intergenic png - chrX 1362874 intergenic not near genes chrX 1367971 intergenic not near genes chrX_5_1360001 chrX_1360001 RAL-818 1485 chrX 1503999 1504017 chrX 1507903 1507917 4 3896 11.5 13.5 12.5 0.3 3918 chrX 1503999 intron,intron inc +,Nmdar2 - chrX 1505958 intron,intron inc +,Nmdar2 - chrX 1507917 intron inc + chrX_4_1505001 chrX_1505001 RAL-818 1486 chrX 1518042 1518059 chrX 1523441 1523461 jockey 6 5401 3.0 4.5 3.8 1.2 5419 chrX 1518042 intergenic inc + chrX 1520752 intergenic not near genes chrX 1523461 intergenic not near genes chrX_6_1520001 chrX_1520001 RAL-818 1487 chrX 1518060 1518070 chrX 1523436 1523469 jockey 9 5398 3.0 3.5 3.2 2.1 5409 chrX 1518060 intergenic inc + chrX 1520764 intergenic not near genes chrX 1523469 intergenic not near genes chrX_9_1520001 chrX_1520001 RAL-818 1488 chrX 1627975 1628003 chrX 1635443 1635470 gtwin 11 7468 5.5 4.5 5.0 1.8 7495 chrX 1627975 intron,intron Mur2B -,br + chrX 1631722 intron,intron Mur2B -,br + chrX 1635470 intron,intron Mur2B -,br + chrX_11_1630001 chrX_1630001 RAL-818 1489 chrX 2146651 2146683 chrX 2146743 2146776 7 92 2.5 6.5 4.5 1.3 125 chrX 2146651 intron Pgd + chrX 2146714 intron Pgd + chrX 2146776 intron Pgd + chrX_7_2145001 chrX_2145001 RAL-818 1490 chrX 2193351 2193374 chrX 2195432 2195456 12 2084 19.5 19.0 19.2 0.6 2105 chrX 2193351 intron,intron Mct1 +,CG14053 - chrX 2194404 intron Mct1 + chrX 2195456 intron Mct1 + chrX_12_2190001 chrX_2190001 RAL-818 1491 chrX 2399858 2399870 chrX 2408189 2408194 roo 5 8334 4.5 5.5 5.0 0.8 8336 chrX 2399858 intergenic not near genes chrX 2404026 intergenic not near genes chrX 2408194 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-818 1492 chrX 2559362 2559389 chrX 2559450 2559477 10 87 2.0 2.5 2.2 3.1 115 chrX 2559362 intron Pdfr + chrX 2559420 intron Pdfr + chrX 2559477 intron Pdfr + chrX_10_2555001 chrX_2555001 RAL-818 1493 chrX 2578810 2578846 chrX 2578899 2578938 9 90 1.0 1.5 1.2 4.1 128 chrX 2578810 intergenic Pdfr +,Vha36-3 - chrX 2578874 intergenic Vha36-3 -,Pdfr + chrX 2578938 intergenic Vha36-3 -,Pdfr + chrX_9_2575001 chrX_2575001 RAL-818 1494 chrX 2635373 2635400 chrX 2635482 2635509 5 108 2.0 3.5 2.8 1.3 136 chrX 2635373 intron sgg + chrX 2635441 intron sgg + chrX 2635509 intron sgg + chrX_5_2635001 chrX_2635001 RAL-818 1495 chrX 2888137 2888145 chrX 2888214 2888223 4 77 2.5 4.0 3.2 1.0 86 chrX 2888137 intron kirre + chrX 2888180 intron kirre + chrX 2888223 intron kirre + chrX_4_2885001 chrX_2885001 RAL-818 1496 chrX 2932869 2932901 chrX 2933113 2933145 6 243 1.0 1.0 1.0 3.0 276 chrX 2932869 intron kirre + chrX 2933007 intron kirre + chrX 2933145 intron kirre + chrX_6_2930001 chrX_2930001 RAL-818 1497 chrX 3075632 3075661 chrX 3080938 3080943 Transpac 4 5300 2.0 1.0 1.5 1.6 5311 chrX 3075632 intron kirre + chrX 3078288 intron kirre + chrX 3080943 intron kirre + chrX_4_3075001 chrX_3075001 RAL-818 1498 chrX 3306346 3306364 chrX 3306428 3306446 5 82 1.5 0.0 0.8 2.8 100 chrX 3306346 intron dnc + chrX 3306396 intron dnc + chrX 3306446 intron dnc + chrX_5_3305001 chrX_3305001 RAL-818 1499 chrX 3408986 3409011 chrX 3409063 3409088 10 77 1.5 1.0 1.2 4.5 102 chrX 3408986 intron,intron CR44999 +,CG12535 - chrX 3409037 intron,intron CR44999 +,CG12535 - chrX 3409088 intron,intron CR44999 +,CG12535 - chrX_10_3405001 chrX_3405001 RAL-818 1500 chrX 3459983 3460008 chrX 3460060 3460084 8 77 1.0 1.5 1.2 3.6 101 chrX 3459983 intron,intron CR44999 +,CG16782 - chrX 3460034 intron,5` UTR CR44999 +,CG16782 - chrX 3460084 intron,5` UTR CR44999 +,CG16782 - chrX_8_3460001 chrX_3460001 RAL-818 1501 chrX 3493089 3493108 chrX 3502248 3502266 roo 7 9159 5.5 0.5 3.0 1.8 9177 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497678 intron,intron CR44999 +,Gas8 - chrX 3502266 intron,intron CR44999 +,Gas8 - chrX_7_3495001 chrX_3495001 RAL-818 1502 chrX 3597551 3597574 chrX 3619719 3619740 roo 7 22168 2.0 2.5 2.2 2.2 22189 chrX 3597551 intron AstA-R1 + chrX 3608646 intron AstA-R1 + chrX 3619740 intron AstA-R1 + chrX_7_3605001 chrX_3605001 RAL-818 1503 chrX 3657415 3657428 chrX 3657495 3657507 5 80 4.0 3.5 3.8 1.0 92 chrX 3657415 intron AstA-R1 + chrX 3657461 intron AstA-R1 + chrX 3657507 intron AstA-R1 + chrX_5_3655001 chrX_3655001 RAL-818 1504 chrX 3703710 3703726 chrX 3703798 3703808 6 86 1.5 2.5 2.0 2.0 98 chrX 3703710 intergenic CR45102 + chrX 3703759 intergenic CR45102 + chrX 3703808 intergenic not near genes chrX_6_3700001 chrX_3700001 RAL-818 1505 chrX 3726766 3726797 chrX 3730163 3730194 NOF 9 3396 3.5 3.0 3.2 2.1 3428 chrX 3726766 intron tlk + chrX 3728480 intron tlk + chrX 3730194 intron tlk + chrX_9_3725001 chrX_3725001 RAL-818 1506 chrX 3866104 3866137 chrX 3866182 3866215 6 78 0.5 2.0 1.2 2.7 111 chrX 3866104 intron yin - chrX 3866160 intron yin - chrX 3866215 intron yin - chrX_6_3865001 chrX_3865001 RAL-818 1507 chrX 3950682 3950696 chrX 3950994 3951008 4 309 7.0 6.5 6.8 0.5 326 chrX 3950682 intron Vap-33A + chrX 3950845 intron Vap-33A + chrX 3951008 intron Vap-33A + chrX_4_3950001 chrX_3950001 RAL-818 1508 chrX 3986862 3986894 chrX 3994495 3994527 412 6 7633 2.5 1.0 1.8 2.1 7665 chrX 3986862 intergenic not near genes chrX 3990694 intergenic not near genes chrX 3994527 intergenic not near genes chrX_6_3990001 chrX_3990001 RAL-818 1509 chrX 4046333 4046359 chrX 4046417 4046443 5 83 1.5 0.5 1.0 2.5 110 chrX 4046333 intergenic not near genes chrX 4046388 intergenic not near genes chrX 4046443 intergenic not near genes chrX_5_4045001 chrX_4045001 RAL-818 1510 chrX 4047470 4047497 chrX 4047583 4047610 6 113 6.0 1.5 3.8 1.2 140 chrX 4047470 intergenic CR45482 - chrX 4047540 intergenic CR45482 - chrX 4047610 3` UTR CR45482 - chrX_6_4045001 chrX_4045001 RAL-818 1511 chrX 4048502 4048522 chrX 4048578 4048598 5 76 2.5 1.5 2.0 1.7 96 chrX 4048502 3` UTR CR45482 - chrX 4048550 3` UTR CR45482 - chrX 4048598 3` UTR CR45482 - chrX_5_4045001 chrX_4045001 RAL-818 1512 chrX 4091419 4091453 chrX 4091503 4091537 7 84 3.0 2.0 2.5 2.0 118 chrX 4091419 3` UTR CG43689 + chrX 4091478 3` UTR CG43689 + chrX 4091537 3` UTR CG43689 + chrX_7_4090001 chrX_4090001 RAL-818 1513 chrX 4101885 4101898 chrX 4101961 4101975 4 78 1.0 7.5 4.2 0.8 90 chrX 4101885 exon CG15375 + chrX 4101930 exon CG15375 + chrX 4101975 exon CG15375 + chrX_4_4100001 chrX_4100001 RAL-818 1514 chrX 4324394 4324408 chrX 4324471 4324485 8 76 1.5 3.0 2.2 2.5 91 chrX 4324394 intron norpA + chrX 4324440 intron norpA + chrX 4324485 intron norpA + chrX_8_4320001 chrX_4320001 RAL-818 1515 chrX 4358085 4358120 chrX 4358187 4358222 5 101 2.0 0.0 1.0 2.5 137 chrX 4358085 intron norpA + chrX 4358154 intron norpA + chrX 4358222 intron norpA + chrX_5_4355001 chrX_4355001 RAL-818 1516 chrX 4396974 4397009 chrX 4397058 4397094 9 84 1.0 1.0 1.0 4.5 120 chrX 4396974 intron CR32773 - chrX 4397034 intron CR32773 - chrX 4397094 intron CR32773 - chrX_9_4395001 chrX_4395001 RAL-818 1517 chrX 4693767 4693779 chrX 4693845 4693871 7 87 0.0 3.0 1.5 2.8 104 chrX 4693767 intron ctp + chrX 4693819 intron ctp + chrX 4693871 intron ctp + chrX_7_4690001 chrX_4690001 RAL-818 1518 chrX 4700393 4700425 chrX 4700736 4700768 jockey 4 343 1.0 1.0 1.0 2.0 375 chrX 4700393 3` UTR ctp + chrX 4700580 3` UTR ctp + chrX 4700768 3` UTR ctp + chrX_4_4700001 chrX_4700001 RAL-818 1519 chrX 4731826 4731831 chrX 4736908 4736924 jockey 6 5091 7.0 3.0 5.0 1.0 5098 chrX 4731826 intergenic not near genes chrX 4734375 intergenic not near genes chrX 4736924 intergenic not near genes chrX_6_4730001 chrX_4730001 RAL-818 1520 chrX 4763255 4763275 chrX 4763742 4763763 Stalker4 6 488 4.0 1.0 2.5 1.7 508 chrX 4763255 intergenic not near genes chrX 4763509 intergenic not near genes chrX 4763763 intergenic not near genes chrX_6_4760001 chrX_4760001 RAL-818 1521 chrX 4792379 4792396 chrX 4792812 4792829 jockey 5 433 2.0 3.5 2.8 1.3 450 chrX 4792379 intergenic not near genes chrX 4792604 intergenic not near genes chrX 4792829 intergenic not near genes chrX_5_4790001 chrX_4790001 RAL-818 1522 chrX 4792399 4792407 chrX 4792811 4792840 jockey 7 427 1.0 3.5 2.2 2.2 441 chrX 4792399 intergenic not near genes chrX 4792620 intergenic not near genes chrX 4792840 intergenic not near genes chrX_7_4790001 chrX_4790001 RAL-818 1523 chrX 4931351 4931381 chrX 4931441 4931475 12 91 15.5 12.5 14.0 0.8 124 chrX 4931351 intron CG44774 - chrX 4931413 intron CG44774 - chrX 4931475 intron CG44774 - chrX_12_4930001 chrX_4930001 RAL-818 1524 chrX 4944482 4944505 chrX 4944619 4944642 4 137 0.0 0.5 0.2 3.3 160 chrX 4944482 intron Ptp4E + chrX 4944562 intron Ptp4E + chrX 4944642 intron Ptp4E + chrX_4_4940001 chrX_4940001 RAL-818 1525 chrX 4990046 4990058 chrX 4997260 4997272 roo 5 7214 4.5 0.5 2.5 1.4 7226 chrX 4990046 intron CR44833 - chrX 4993659 intron CR44833 - chrX 4997272 intron CR44833 - chrX_5_4990001 chrX_4990001 RAL-818 1526 chrX 5147854 5147884 chrX 5147960 5147979 8 104 3.0 0.0 1.5 3.2 125 chrX 5147854 intron,intron CG15465 +,rg + chrX 5147916 intron,intron CG15465 +,rg + chrX 5147979 intron,intron CG15465 +,rg + chrX_8_5145001 chrX_5145001 RAL-818 1527 chrX 5204451 5204469 chrX 5204654 5204672 4 203 9.0 2.5 5.8 0.6 221 chrX 5204451 intron,intron CG15465 +,rg + chrX 5204562 intron,intron CG15465 +,rg + chrX 5204672 intron,intron CG15465 +,rg + chrX_4_5200001 chrX_5200001 RAL-818 1528 chrX 5272825 5272848 chrX 5272908 5272935 7 86 3.0 1.0 2.0 2.3 110 chrX 5272825 intergenic not near genes chrX 5272880 intergenic not near genes chrX 5272935 intergenic not near genes chrX_7_5270001 chrX_5270001 RAL-818 1529 chrX 5338722 5338734 chrX 5339967 5339986 jockey 5 1251 1.5 3.5 2.5 1.4 1264 chrX 5338722 intergenic not near genes chrX 5339354 intergenic not near genes chrX 5339986 intergenic SK + chrX_5_5335001 chrX_5335001 RAL-818 1530 chrX 5441986 5442018 chrX 5442093 5442103 7 96 1.0 1.0 1.0 3.5 117 chrX 5441986 intergenic not near genes chrX 5442044 intergenic not near genes chrX 5442103 intergenic not near genes chrX_7_5440001 chrX_5440001 RAL-818 1531 chrX 5798875 5798888 chrX 5799037 5799050 5 159 1.0 7.0 4.0 1.0 175 chrX 5798875 intergenic not near genes chrX 5798962 intergenic not near genes chrX 5799050 intergenic not near genes chrX_5_5795001 chrX_5795001 RAL-818 1532 chrX 6171585 6171609 chrX 6179018 6179042 Quasimodo 5 7433 3.0 2.0 2.5 1.4 7457 chrX 6171585 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179042 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-818 1533 chrX 6335217 6335242 chrX 6337727 6337742 Tirant 4 2508 0.5 6.0 3.2 1.0 2525 chrX 6335217 intergenic not near genes chrX 6336480 intergenic not near genes chrX 6337742 intergenic CG3842 + chrX_4_6335001 chrX_6335001 RAL-818 1534 chrX 6392884 6392896 chrX 6397636 6397661 Doc 4 4761 2.0 5.5 3.8 0.8 4777 chrX 6392884 intergenic not near genes chrX 6395272 intergenic not near genes chrX 6397661 intergenic not near genes chrX_4_6395001 chrX_6395001 RAL-818 1535 chrX 6539916 6539947 chrX 6540018 6540047 4 98 1.5 1.5 1.5 1.6 131 chrX 6539916 intergenic not near genes chrX 6539982 intergenic not near genes chrX 6540047 intergenic not near genes chrX_4_6535001 chrX_6535001 RAL-818 1536 chrX 6562825 6562836 chrX 6571307 6571318 Tirant 4 8481 7.5 4.0 5.8 0.6 8493 chrX 6562825 intron CG34417 + chrX 6567072 intron CG34417 + chrX 6571318 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-818 1537 chrX 6592064 6592081 chrX 6592260 6592276 5 195 3.0 0.5 1.8 1.8 212 chrX 6592064 intron Pat1 + chrX 6592170 intron Pat1 + chrX 6592276 intron Pat1 + chrX_5_6590001 chrX_6590001 RAL-818 1538 chrX 6605490 6605507 chrX 6608512 6608529 Burdock 4 3022 2.0 5.0 3.5 0.9 3039 chrX 6605490 intron pigs + chrX 6607010 intron pigs + chrX 6608529 intron pigs + chrX_4_6605001 chrX_6605001 RAL-818 1539 chrX 6737523 6737548 chrX 6737605 6737630 10 78 4.0 5.5 4.8 1.7 107 chrX 6737523 intron CG3168 - chrX 6737576 intron CG3168 - chrX 6737630 intron CG3168 - chrX_10_6735001 chrX_6735001 RAL-818 1540 chrX 6897588 6897704 chrX 6897665 6897814 4 102 1.5 1.5 1.5 1.6 226 chrX 6897588 intergenic not near genes chrX 6897701 intergenic not near genes chrX 6897814 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-818 1541 chrX 7023600 7023625 chrX 7030990 7031011 Tabor 9 7389 3.5 1.0 2.2 2.8 7411 chrX 7023600 intron CG12541 - chrX 7027306 intron CG12541 - chrX 7031011 intron CG12541 - chrX_9_7025001 chrX_7025001 RAL-818 1542 chrX 7125243 7125278 chrX 7134402 7134429 roo 8 9158 0.5 4.0 2.2 2.5 9186 chrX 7125243 intergenic not near genes chrX 7129836 intergenic not near genes chrX 7134429 intergenic not near genes chrX_8_7125001 chrX_7125001 RAL-818 1543 chrX 7322896 7322932 chrX 7322980 7323016 9 84 2.0 1.0 1.5 3.6 120 chrX 7322896 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7322956 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX 7323016 intron,intron,intron CR44357 -,CG1677 -,Atg5 - chrX_9_7320001 chrX_7320001 RAL-818 1544 chrX 7632082 7632089 chrX 7632163 7632170 4 81 2.0 0.5 1.2 1.8 88 chrX 7632082 intron ct + chrX 7632126 intron ct + chrX 7632170 intron ct + chrX_4_7630001 chrX_7630001 RAL-818 1545 chrX 7702907 7702931 chrX 7703344 7703370 jockey 7 438 1.5 2.5 2.0 2.3 463 chrX 7702907 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703370 intron CHES-1-like - chrX_7_7700001 chrX_7700001 RAL-818 1546 chrX 7784239 7784242 chrX 7784539 7784543 jockey 5 301 1.0 4.0 2.5 1.4 304 chrX 7784239 intergenic not near genes chrX 7784391 intergenic not near genes chrX 7784543 intergenic not near genes chrX_5_7780001 chrX_7780001 RAL-818 1547 chrX 7832443 7832463 chrX 7832532 7832552 5 87 1.0 0.5 0.8 2.8 109 chrX 7832443 intron CG1402 + chrX 7832498 intron CG1402 + chrX 7832552 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-818 1548 chrX 8085574 8085598 chrX 8085660 8085684 7 86 2.5 2.5 2.5 2.0 110 chrX 8085574 intron,5` UTR CG2256 -,CR45535 + chrX 8085629 intron,5` UTR CG2256 -,CR45535 + chrX 8085684 intron,5` UTR CG2256 -,CR45535 + chrX_7_8085001 chrX_8085001 RAL-818 1549 chrX 8092287 8092305 chrX 8092372 8092390 6 85 4.0 3.0 3.5 1.3 103 chrX 8092287 intron Ubc-E2H - chrX 8092338 intron Ubc-E2H - chrX 8092390 intron Ubc-E2H - chrX_6_8090001 chrX_8090001 RAL-818 1550 chrX 8159683 8159711 chrX 8159765 8159782 6 80 2.5 1.5 2.0 2.0 99 chrX 8159683 intergenic GIIIspla2 +,CG15337 + chrX 8159732 intergenic CG15337 +,GIIIspla2 + chrX 8159782 intergenic CG15337 +,GIIIspla2 + chrX_6_8155001 chrX_8155001 RAL-818 1551 chrX 8421461 8421491 chrX 8421553 8421583 8 92 1.0 3.0 2.0 2.7 122 chrX 8421461 intron Trf2 + chrX 8421522 intron Trf2 + chrX 8421583 intron Trf2 + chrX_8_8420001 chrX_8420001 RAL-818 1552 chrX 8730450 8730464 chrX 8730526 8730540 4 76 0.0 6.0 3.0 1.0 90 chrX 8730450 intergenic not near genes chrX 8730495 intergenic not near genes chrX 8730540 intergenic not near genes chrX_4_8730001 chrX_8730001 RAL-818 1553 chrX 8877783 8877801 chrX 8877907 8877925 5 124 3.0 0.0 1.5 2.0 142 chrX 8877783 intron Moe - chrX 8877854 intron Moe - chrX 8877925 intron Moe - chrX_5_8875001 chrX_8875001 RAL-818 1554 chrX 8922339 8922362 chrX 8922772 8922796 jockey 7 433 1.5 2.5 2.0 2.3 457 chrX 8922339 intron rdgA + chrX 8922568 intron rdgA + chrX 8922796 intron rdgA + chrX_7_8920001 chrX_8920001 RAL-818 1555 chrX 8948773 8948780 chrX 8956283 8956290 roo 4 7510 0.5 2.5 1.5 1.6 7517 chrX 8948773 intron rdgA + chrX 8952532 intron rdgA + chrX 8956290 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-818 1556 chrX 9004104 9004125 chrX 9004184 9004205 5 79 1.0 6.0 3.5 1.1 101 chrX 9004104 intron,intron rdgA +,CR43836 - chrX 9004154 intron,intron rdgA +,CR43836 - chrX 9004205 intron,intron rdgA +,CR43836 - chrX_5_9000001 chrX_9000001 RAL-818 1557 chrX 9465765 9465799 chrX 9466109 9466144 8 344 1.0 1.5 1.2 3.6 379 chrX 9465765 intron mgl - chrX 9465954 intron mgl - chrX 9466144 intron mgl - chrX_8_9465001 chrX_9465001 RAL-818 1558 chrX 9508146 9508165 chrX 9509663 9509683 jockey 10 1518 4.0 4.5 4.2 1.9 1537 chrX 9508146 intron CG32700 - chrX 9508914 intron CG32700 - chrX 9509683 intron CG32700 - chrX_10_9505001 chrX_9505001 RAL-818 1559 chrX 9575794 9575801 chrX 9576118 9576125 mdg3 4 324 8.0 5.0 6.5 0.5 331 chrX 9575794 intron,exon CG32699 -,CG42395 - chrX 9575960 intron,intron CG32699 -,CG42395 - chrX 9576125 intron,exon CG32699 -,CG42395 - chrX_4_9575001 chrX_9575001 RAL-818 1560 chrX 9575804 9575824 chrX 9576117 9576148 mdg3 5 320 3.5 5.0 4.2 1.0 344 chrX 9575804 intron,exon CG32699 -,CG42395 - chrX 9575976 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-818 1561 chrX 9791862 9791891 chrX 9791959 9791988 4 97 1.5 1.0 1.2 1.8 126 chrX 9791862 intron CG32698 + chrX 9791925 intron CG32698 + chrX 9791988 intron CG32698 + chrX_4_9790001 chrX_9790001 RAL-818 1562 chrX 10035450 10035464 chrX 10035521 10035550 4 82 1.0 3.0 2.0 1.3 100 chrX 10035450 exon Cht6 + chrX 10035500 exon Cht6 + chrX 10035550 exon Cht6 + chrX_4_10035001 chrX_10035001 RAL-818 1563 chrX 10138226 10138241 chrX 10145730 10145745 412 4 7504 3.0 3.5 3.2 1.0 7519 chrX 10138226 intron,intron RhoU +,CR44894 - chrX 10141986 intron,intron RhoU +,CR44894 - chrX 10145745 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-818 1564 chrX 10154290 10154308 chrX 10154366 10154384 6 76 2.0 1.5 1.8 2.1 94 chrX 10154290 intron,intron CR44894 -,CG12645 + chrX 10154337 intron,intron CR44894 -,CG12645 + chrX 10154384 intron,exon CR44894 -,CG12645 + chrX_6_10150001 chrX_10150001 RAL-818 1565 chrX 10285890 10285906 chrX 10286226 10286239 4 335 1.0 2.0 1.5 1.6 349 chrX 10285890 intron alpha-Man-I - chrX 10286064 intron alpha-Man-I - chrX 10286239 intron alpha-Man-I - chrX_4_10285001 chrX_10285001 RAL-818 1566 chrX 10367189 10367204 chrX 10367298 10367313 7 109 2.0 2.5 2.2 2.2 124 chrX 10367189 exon CG32679 - chrX 10367251 intron CG32679 - chrX 10367313 intron CG32679 - chrX_7_10365001 chrX_10365001 RAL-818 1567 chrX 10401405 10401425 chrX 10401486 10401506 6 81 0.0 4.0 2.0 2.0 101 chrX 10401405 intron flw + chrX 10401456 intron flw + chrX 10401506 intron flw + chrX_6_10400001 chrX_10400001 RAL-818 1568 chrX 10550854 10550882 chrX 10552321 10552349 hobo 8 1467 2.5 1.0 1.8 2.9 1495 chrX 10550854 intron spri - chrX 10551602 intron spri - chrX 10552349 intron spri - chrX_8_10550001 chrX_10550001 RAL-818 1569 chrX 10686051 10686084 chrX 10691188 10691221 roo 7 5137 2.0 1.5 1.8 2.5 5170 chrX 10686051 intron X11Lbeta + chrX 10688636 intron X11Lbeta + chrX 10691221 intron X11Lbeta + chrX_7_10685001 chrX_10685001 RAL-818 1570 chrX 10772679 10772694 chrX 10772760 10772777 Tirant 6 82 1.5 1.5 1.5 2.4 98 chrX 10772679 intron CG15211 + chrX 10772728 intron CG15211 + chrX 10772777 intron CG15211 + chrX_6_10770001 chrX_10770001 RAL-818 1571 chrX 11141989 11142092 chrX 11142064 11142168 5 75 0.0 0.0 0.0 5.0 179 chrX 11141989 intergenic CG15199 - chrX 11142078 intergenic CG15199 -,CG15202 + chrX 11142168 intergenic CG15199 -,CG15202 + chrX_5_11140001 chrX_11140001 RAL-818 1572 chrX 11268563 11268576 chrX 11270056 11270069 hopper2 4 1493 4.0 4.0 4.0 0.8 1506 chrX 11268563 intron CG44422 - chrX 11269316 intron CG44422 - chrX 11270069 intron CG44422 - chrX_4_11265001 chrX_11265001 RAL-818 1573 chrX 11321563 11321583 chrX 11321646 11321665 5 83 3.5 1.5 2.5 1.4 102 chrX 11321563 intergenic sisA - chrX 11321614 3` UTR sisA - chrX 11321665 3` UTR sisA - chrX_5_11320001 chrX_11320001 RAL-818 1574 chrX 11633419 11633446 chrX 11640473 11640500 297 7 7054 2.0 2.0 2.0 2.3 7081 chrX 11633419 intron Ptp10D + chrX 11636960 intron Ptp10D + chrX 11640500 intron Ptp10D + chrX_7_11635001 chrX_11635001 RAL-818 1575 chrX 11657920 11657923 chrX 11658008 11658015 4 90 0.0 4.0 2.0 1.3 95 chrX 11657920 intron Ptp10D + chrX 11657968 intron Ptp10D + chrX 11658015 intron Ptp10D + chrX_4_11655001 chrX_11655001 RAL-818 1576 chrX 11922367 11922380 chrX 11922500 11922513 6 133 2.5 3.0 2.8 1.6 146 chrX 11922367 exon Sclp - chrX 11922440 intron Sclp - chrX 11922513 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-818 1577 chrX 12094033 12094066 chrX 12094125 12094158 10 89 0.5 0.5 0.5 6.7 125 chrX 12094033 intron,intron CR43960 +,Ten-a + chrX 12094096 intron,intron CR43960 +,Ten-a + chrX 12094158 intron,intron CR43960 +,Ten-a + chrX_10_12090001 chrX_12090001 RAL-818 1578 chrX 12356863 12356881 chrX 12356975 12356993 5 112 0.5 6.0 3.2 1.2 130 chrX 12356863 intergenic not near genes chrX 12356928 intergenic not near genes chrX 12356993 intergenic not near genes chrX_5_12355001 chrX_12355001 RAL-818 1579 chrX 12375491 12375504 chrX 12375589 12375602 5 98 1.5 2.0 1.8 1.8 111 chrX 12375491 intergenic Ir11a - chrX 12375546 intergenic Ir11a - chrX 12375602 exon Ir11a - chrX_5_12375001 chrX_12375001 RAL-818 1580 chrX 12752279 12752307 chrX 12752366 12752394 8 87 4.0 3.0 3.5 1.8 115 chrX 12752279 5` UTR CR44619 + chrX 12752336 5` UTR CR44619 + chrX 12752394 5` UTR CR44619 + chrX_8_12750001 chrX_12750001 RAL-818 1581 chrX 12837097 12837101 chrX 12837743 12837755 4 652 2.5 0.0 1.2 1.8 658 chrX 12837097 intron Pde9 - chrX 12837426 intron Pde9 - chrX 12837755 intron Pde9 - chrX_4_12835001 chrX_12835001 RAL-818 1582 chrX 13146599 13146621 chrX 13146687 13146709 4 88 1.5 2.0 1.8 1.4 110 chrX 13146599 intron CG32645 + chrX 13146654 intron CG32645 + chrX 13146709 intron CG32645 + chrX_4_13145001 chrX_13145001 RAL-818 1583 chrX 13172351 13172373 chrX 13172427 13172447 9 75 3.5 2.5 3.0 2.2 96 chrX 13172351 exon CG34411 - chrX 13172399 intron CG34411 - chrX 13172447 intron CG34411 - chrX_9_13170001 chrX_13170001 RAL-818 1584 chrX 13403029 13403041 chrX 13403156 13403168 X-element 5 127 4.5 2.0 3.2 1.2 139 chrX 13403029 intergenic CG12725 - chrX 13403098 intergenic CG12725 - chrX 13403168 intergenic CG12725 - chrX_5_13400001 chrX_13400001 RAL-818 1585 chrX 13429467 13429473 chrX 13430616 13430622 jockey 5 1149 6.0 3.5 4.8 0.9 1155 chrX 13429467 intergenic not near genes chrX 13430044 intergenic not near genes chrX 13430622 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-818 1586 chrX 13429477 13429488 chrX 13430613 13430637 jockey 4 1146 4.0 2.5 3.2 1.0 1160 chrX 13429477 intergenic not near genes chrX 13430057 intergenic not near genes chrX 13430637 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-818 1587 chrX 13507308 13507330 chrX 13507388 13507411 6 77 1.0 2.5 1.8 2.1 103 chrX 13507308 intron Neto + chrX 13507360 intron Neto + chrX 13507411 intron Neto + chrX_6_13505001 chrX_13505001 RAL-818 1588 chrX 13558627 13558643 chrX 13558727 13558743 5 100 2.0 2.0 2.0 1.7 116 chrX 13558627 intergenic not near genes chrX 13558685 intergenic not near genes chrX 13558743 intergenic not near genes chrX_5_13555001 chrX_13555001 RAL-818 1589 chrX 13934309 13934316 chrX 13934392 13934399 4 83 1.0 2.5 1.8 1.4 90 chrX 13934309 intron mamo - chrX 13934354 intron mamo - chrX 13934399 intron mamo - chrX_4_13930001 chrX_13930001 RAL-818 1590 chrX 14105029 14105049 chrX 14114180 14114200 roo 9 9150 4.5 5.0 4.8 1.6 9171 chrX 14105029 intergenic not near genes chrX 14109614 intergenic not near genes chrX 14114200 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-818 1591 chrX 14149793 14149800 chrX 14149894 14149903 5 103 2.0 1.0 1.5 2.0 110 chrX 14149793 intergenic not near genes chrX 14149848 intergenic not near genes chrX 14149903 intergenic not near genes chrX_5_14145001 chrX_14145001 RAL-818 1592 chrX 14157593 14157615 chrX 14163250 14163271 297 4 5657 1.5 1.5 1.5 1.6 5678 chrX 14157593 intergenic not near genes chrX 14160432 intergenic not near genes chrX 14163271 intergenic not near genes chrX_4_14160001 chrX_14160001 RAL-818 1593 chrX 14371810 14371842 chrX 14371887 14371922 11 79 3.0 0.5 1.8 3.9 112 chrX 14371810 intron dpr8 + chrX 14371866 intron dpr8 + chrX 14371922 intron dpr8 + chrX_11_14370001 chrX_14370001 RAL-818 1594 chrX 14395107 14395134 chrX 14395206 14395233 5 97 0.0 1.0 0.5 3.3 126 chrX 14395107 intron dpr8 + chrX 14395170 intron dpr8 + chrX 14395233 intron dpr8 + chrX_5_14395001 chrX_14395001 RAL-818 1595 chrX 14413828 14413844 chrX 14413922 14413938 4 94 1.0 2.0 1.5 1.6 110 chrX 14413828 intron dpr8 + chrX 14413883 intron dpr8 + chrX 14413938 intron dpr8 + chrX_4_14410001 chrX_14410001 RAL-818 1596 chrX 14447675 14447691 chrX 14447755 14447771 8 80 0.0 2.0 1.0 4.0 96 chrX 14447675 intron dpr8 + chrX 14447723 intron dpr8 + chrX 14447771 intron dpr8 + chrX_8_14445001 chrX_14445001 RAL-818 1597 chrX 14484968 14484995 chrX 14485057 14485084 7 89 0.0 4.0 2.0 2.3 116 chrX 14484968 intergenic not near genes chrX 14485026 intergenic not near genes chrX 14485084 intergenic not near genes chrX_7_14485001 chrX_14485001 RAL-818 1598 chrX 14628183 14628210 chrX 14628272 14628301 5 90 4.5 0.5 2.5 1.4 118 chrX 14628183 intron NetA - chrX 14628242 intron NetA - chrX 14628301 intron NetA - chrX_5_14625001 chrX_14625001 RAL-818 1599 chrX 14636464 14636493 chrX 14641904 14641934 I-element 11 5441 2.5 2.0 2.2 3.4 5470 chrX 14636464 intron NetA - chrX 14639199 intron NetA - chrX 14641934 intron NetA - chrX_11_14635001 chrX_14635001 RAL-818 1600 chrX 14778036 14778055 chrX 14782833 14782852 Doc 7 4797 2.0 2.0 2.0 2.3 4816 chrX 14778036 intergenic CG5347 + chrX 14780444 intergenic not near genes chrX 14782852 intergenic Ag5r2 - chrX_7_14780001 chrX_14780001 RAL-818 1601 chrX 14968084 14968098 chrX 14968163 14968177 7 78 1.0 6.0 3.5 1.6 93 chrX 14968084 intron eag + chrX 14968130 intron eag + chrX 14968177 intron eag + chrX_7_14965001 chrX_14965001 RAL-818 1602 chrX 14981707 14981736 chrX 14981786 14981815 4 79 2.5 0.0 1.2 1.8 108 chrX 14981707 intron eag + chrX 14981761 intron eag + chrX 14981815 intron eag + chrX_4_14980001 chrX_14980001 RAL-818 1603 chrX 15070199 15070360 chrX 15070292 15070445 6 90 0.0 0.0 0.0 6.0 246 chrX 15070199 3` UTR Lsd-2 - chrX 15070322 3` UTR Lsd-2 - chrX 15070445 3` UTR Lsd-2 - chrX_6_15070001 chrX_15070001 RAL-818 1604 chrX 15107644 15107666 chrX 15107773 15107792 9 129 1.0 1.5 1.2 4.1 148 chrX 15107644 intron Rab3-GEF + chrX 15107718 intron Rab3-GEF + chrX 15107792 intron Rab3-GEF + chrX_9_15105001 chrX_15105001 RAL-818 1605 chrX 15273726 15273735 chrX 15274880 15274896 1360 6 1161 2.0 7.0 4.5 1.1 1170 chrX 15273726 intergenic not near genes chrX 15274311 intergenic not near genes chrX 15274896 intergenic not near genes chrX_6_15270001 chrX_15270001 RAL-818 1606 chrX 15369854 15369864 chrX 15369928 15369947 4 81 1.0 4.0 2.5 1.1 93 chrX 15369854 intron acj6 - chrX 15369900 intron acj6 - chrX 15369947 intron acj6 - chrX_4_15365001 chrX_15365001 RAL-818 1607 chrX 15413053 15413084 chrX 15417353 15417385 Juan 9 4301 1.5 1.5 1.5 3.6 4332 chrX 15413053 intron Cngl - chrX 15415219 intron Cngl - chrX 15417385 intron Cngl - chrX_9_15415001 chrX_15415001 RAL-818 1608 chrX 15435692 15435705 chrX 15436123 15436138 rover 5 432 0.5 5.5 3.0 1.2 446 chrX 15435692 intron Cngl - chrX 15435915 intron Cngl - chrX 15436138 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-818 1609 chrX 15565647 15565662 chrX 15565733 15565748 4 86 2.0 2.0 2.0 1.3 101 chrX 15565647 intergenic not near genes chrX 15565698 intergenic not near genes chrX 15565748 intergenic not near genes chrX_4_15565001 chrX_15565001 RAL-818 1610 chrX 15678054 15678068 chrX 15678131 15678145 7 77 1.5 5.0 3.2 1.7 91 chrX 15678054 intergenic CG12708 + chrX 15678100 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_7_15675001 chrX_15675001 RAL-818 1611 chrX 15818774 15818804 chrX 15818850 15818879 8 75 2.5 1.5 2.0 2.7 105 chrX 15818774 intron sd + chrX 15818826 intron sd + chrX 15818879 intron sd + chrX_8_15815001 chrX_15815001 RAL-818 1612 chrX 15898441 15898461 chrX 15898595 15898615 6 154 1.5 2.0 1.8 2.1 174 chrX 15898441 intron shi + chrX 15898528 intron shi + chrX 15898615 intron shi + chrX_6_15895001 chrX_15895001 RAL-818 1613 chrX 16329435 16329447 chrX 16329518 16329529 6 82 0.0 4.5 2.2 1.9 94 chrX 16329435 intron CG9919 - chrX 16329482 intron CG9919 - chrX 16329529 exon CG9919 - chrX_6_16325001 chrX_16325001 RAL-818 1614 chrX 16492645 16492678 chrX 16498222 16498255 mdg3 8 5576 3.5 2.0 2.8 2.1 5610 chrX 16492645 intron para - chrX 16495450 intron para - chrX 16498255 intron para - chrX_8_16495001 chrX_16495001 RAL-818 1615 chrX 16529429 16529439 chrX 16529539 16529550 7 110 0.0 1.0 0.5 4.7 121 chrX 16529429 intron para - chrX 16529490 intron para - chrX 16529550 intron para - chrX_7_16525001 chrX_16525001 RAL-818 1616 chrX 16570875 16570905 chrX 16570955 16570985 5 75 1.5 0.0 0.8 2.8 110 chrX 16570875 intron CanA-14F - chrX 16570930 intron CanA-14F - chrX 16570985 intron CanA-14F - chrX_5_16570001 chrX_16570001 RAL-818 1617 chrX 16623482 16623501 chrX 16623568 16623587 4 86 5.5 0.0 2.8 1.1 105 chrX 16623482 intergenic not near genes chrX 16623534 intergenic Rok - chrX 16623587 intergenic Rok - chrX_4_16620001 chrX_16620001 RAL-818 1618 chrX 16650929 16650958 chrX 16651006 16651031 7 75 3.0 0.0 1.5 2.8 102 chrX 16650929 intergenic CG32573 +,CG42512 + chrX 16650980 intergenic CG32573 +,CG42512 + chrX 16651031 intergenic CG32573 +,CG42512 + chrX_7_16650001 chrX_16650001 RAL-818 1619 chrX 16700529 16700557 chrX 16700610 16700639 4 82 0.0 4.0 2.0 1.3 110 chrX 16700529 intron,3` UTR CG4678 +,spheroide - chrX 16700584 intron,3` UTR CG4678 +,spheroide - chrX 16700639 intron,3` UTR CG4678 +,spheroide - chrX_4_16700001 chrX_16700001 RAL-818 1620 chrX 16936001 16936032 chrX 16936418 16936450 jockey 4 418 0.0 1.5 0.8 2.2 449 chrX 16936001 intron CG4928 + chrX 16936226 intron CG4928 + chrX 16936450 intron CG4928 + chrX_4_16935001 chrX_16935001 RAL-818 1621 chrX 17195217 17195235 chrX 17200301 17200319 flea 4 5083 1.0 1.5 1.2 1.8 5102 chrX 17195217 3` UTR baz + chrX 17197768 3` UTR baz + chrX 17200319 3` UTR baz + chrX_4_17195001 chrX_17195001 RAL-818 1622 chrX 17221826 17221833 chrX 17221912 17221916 5 85 1.0 1.5 1.2 2.3 90 chrX 17221826 intron CG5172 + chrX 17221871 intron CG5172 + chrX 17221916 intron CG5172 + chrX_5_17220001 chrX_17220001 RAL-818 1623 chrX 17373370 17373385 chrX 17373468 17373482 4 96 0.0 2.0 1.0 2.0 112 chrX 17373370 intergenic not near genes chrX 17373426 intergenic not near genes chrX 17373482 intergenic not near genes chrX_4_17370001 chrX_17370001 RAL-818 1624 chrX 17545010 17545036 chrX 17545092 17545117 8 82 1.0 3.5 2.2 2.5 107 chrX 17545010 intron CG43658 - chrX 17545064 intron CG43658 - chrX 17545117 intron CG43658 - chrX_8_17545001 chrX_17545001 RAL-818 1625 chrX 17576887 17576906 chrX 17576984 17577003 4 97 0.0 1.5 0.8 2.2 116 chrX 17576887 intron l(1)G0222 - chrX 17576945 intron l(1)G0222 - chrX 17577003 intron l(1)G0222 - chrX_4_17575001 chrX_17575001 RAL-818 1626 chrX 17680899 17680914 chrX 17680976 17680991 8 76 1.5 5.0 3.2 1.9 92 chrX 17680899 intron chas - chrX 17680945 intron chas - chrX 17680991 intron chas - chrX_8_17680001 chrX_17680001 RAL-818 1627 chrX 17820224 17820248 chrX 17820768 17820792 4 544 10.0 4.0 7.0 0.5 568 chrX 17820224 intergenic not near genes chrX 17820508 intergenic Socs16D - chrX 17820792 3` UTR Socs16D - chrX_4_17820001 chrX_17820001 RAL-818 1628 chrX 17837372 17837388 chrX 17837435 17837452 6 70 4.5 4.0 4.2 1.2 80 chrX 17837372 intron CG6398 + chrX 17837412 intron CG6398 + chrX 17837452 intron CG6398 + chrX_6_17835001 chrX_17835001 RAL-818 1629 chrX 17911851 17911878 chrX 17911939 17911966 4 88 1.0 1.0 1.0 2.0 115 chrX 17911851 intron CG6847 + chrX 17911908 intron CG6847 + chrX 17911966 intron CG6847 + chrX_4_17910001 chrX_17910001 RAL-818 1630 chrX 18122817 18122845 chrX 18122893 18122920 6 76 2.5 0.5 1.5 2.4 103 chrX 18122817 5` UTR CR45606 + chrX 18122868 5` UTR CR45606 + chrX 18122920 intergenic CR45606 + chrX_6_18120001 chrX_18120001 RAL-818 1631 chrX 18214625 18214654 chrX 18214704 18214732 11 77 1.5 3.0 2.2 3.4 107 chrX 18214625 intron CG33639 - chrX 18214678 intron CG33639 - chrX 18214732 intron CG33639 - chrX_11_18210001 chrX_18210001 RAL-818 1632 chrX 18270054 18270067 chrX 18270139 18270155 7 86 1.0 1.5 1.2 3.2 101 chrX 18270054 intergenic not near genes chrX 18270104 intergenic not near genes chrX 18270155 intergenic not near genes chrX_7_18270001 chrX_18270001 RAL-818 1633 chrX 18486112 18486142 chrX 18486201 18486228 11 87 3.5 5.5 4.5 2.0 116 chrX 18486112 exon psh - chrX 18486170 intron psh - chrX 18486228 intron psh - chrX_11_18485001 chrX_18485001 RAL-818 1634 chrX 18537523 18537553 chrX 18537628 18537658 8 105 3.0 3.0 3.0 2.0 135 chrX 18537523 intron Bx + chrX 18537590 intron Bx + chrX 18537658 intron Bx + chrX_8_18535001 chrX_18535001 RAL-818 1635 chrX 18770620 18770647 chrX 18770951 18770978 5 331 4.0 1.0 2.5 1.4 358 chrX 18770620 intron CCKLR-17D3 - chrX 18770799 intron CCKLR-17D3 - chrX 18770978 intron CCKLR-17D3 - chrX_5_18770001 chrX_18770001 RAL-818 1636 chrX 18774456 18774471 chrX 18774541 18774547 5 83 3.5 3.0 3.2 1.2 91 chrX 18774456 intergenic CCKLR-17D3 - chrX 18774502 intergenic CCKLR-17D3 - chrX 18774547 intergenic not near genes chrX_5_18770001 chrX_18770001 RAL-818 1637 chrX 18896537 18896543 chrX 18896648 18896654 5 111 2.0 5.5 3.8 1.0 117 chrX 18896537 3` UTR CG7349 + chrX 18896596 intergenic CG7349 + chrX 18896654 intergenic CG7349 + chrX_5_18895001 chrX_18895001 RAL-818 1638 chrX 18910393 18910419 chrX 18910479 18910509 5 88 0.5 1.5 1.0 2.5 116 chrX 18910393 3` UTR CG7378 + chrX 18910451 3` UTR CG7378 + chrX 18910509 3` UTR CG7378 + chrX_5_18910001 chrX_18910001 RAL-818 1639 chrX 18921929 18921959 chrX 18922009 18922038 7 80 1.0 2.5 1.8 2.5 109 chrX 18921929 intergenic not near genes chrX 18921984 intergenic not near genes chrX 18922038 intergenic not near genes chrX_7_18920001 chrX_18920001 RAL-818 1640 chrX 18969161 18969182 chrX 18969342 18969363 6 181 1.0 3.5 2.2 1.9 202 chrX 18969161 intron CG43759 + chrX 18969262 intron CG43759 + chrX 18969363 intron CG43759 + chrX_6_18965001 chrX_18965001 RAL-818 1641 chrX 19060407 19060419 chrX 19065191 19065203 Doc 4 4784 3.0 2.5 2.8 1.1 4796 chrX 19060407 intron CG14190 + chrX 19062805 intron CG14190 + chrX 19065203 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-818 1642 chrX 19099653 19099687 chrX 19099736 19099769 15 83 1.5 2.0 1.8 5.4 116 chrX 19099653 intergenic not near genes chrX 19099711 intergenic not near genes chrX 19099769 intergenic not near genes chrX_15_19095001 chrX_19095001 RAL-818 1643 chrX 19106828 19106844 chrX 19106903 19106920 9 75 2.5 3.5 3.0 2.2 92 chrX 19106828 intergenic not near genes chrX 19106874 intergenic not near genes chrX 19106920 intergenic not near genes chrX_9_19105001 chrX_19105001 RAL-818 1644 chrX 19308529 19308548 chrX 19308619 19308631 5 84 0.5 2.0 1.2 2.3 102 chrX 19308529 intergenic not near genes chrX 19308580 intergenic not near genes chrX 19308631 intergenic not near genes chrX_5_19305001 chrX_19305001 RAL-818 1645 chrX 19356987 19357013 chrX 19358428 19358454 NOF 4 1441 2.5 0.5 1.5 1.6 1467 chrX 19356987 intron kek5 + chrX 19357720 intron kek5 + chrX 19358454 intron kek5 + chrX_4_19355001 chrX_19355001 RAL-818 1646 chrX 19380158 19380187 chrX 19380399 19380428 pogo 6 241 1.5 2.5 2.0 2.0 270 chrX 19380158 intron kek5 + chrX 19380293 intron kek5 + chrX 19380428 intron kek5 + chrX_6_19380001 chrX_19380001 RAL-818 1647 chrX 19430539 19430557 chrX 19430637 19430655 5 98 2.0 2.5 2.2 1.6 116 chrX 19430539 intron kek5 + chrX 19430597 intron kek5 + chrX 19430655 intron kek5 + chrX_5_19430001 chrX_19430001 RAL-818 1648 chrX 19472121 19472158 chrX 19472691 19472694 jockey 11 562 1.5 3.5 2.5 3.1 573 chrX 19472121 intergenic kek5 + chrX 19472408 intergenic kek5 + chrX 19472694 intergenic not near genes chrX_11_19470001 chrX_19470001 RAL-818 1649 chrX 19662030 19662053 chrX 19662253 19662264 5 220 1.5 3.5 2.5 1.4 234 chrX 19662030 intron CG14223 - chrX 19662147 intron CG14223 - chrX 19662264 intron CG14223 - chrX_5_19660001 chrX_19660001 RAL-818 1650 chrX 19689416 19689437 chrX 19689494 19689515 5 78 1.0 1.0 1.0 2.5 99 chrX 19689416 intergenic Mer -,CG14227 - chrX 19689466 intergenic Mer - chrX 19689515 intergenic Mer - chrX_5_19685001 chrX_19685001 RAL-818 1651 chrX 19710072 19710104 chrX 19711857 19711890 S-element 10 1785 3.0 3.5 3.2 2.4 1818 chrX 19710072 intron meso18E - chrX 19710981 intron meso18E - chrX 19711890 intron meso18E - chrX_10_19710001 chrX_19710001 RAL-818 1652 chrX 19756146 19756154 chrX 19756233 19756240 4 86 0.5 0.5 0.5 2.7 94 chrX 19756146 intron Pmp70 + chrX 19756193 intron Pmp70 + chrX 19756240 intron Pmp70 + chrX_4_19755001 chrX_19755001 RAL-818 1653 chrX 19769509 19769531 chrX 19769586 19769608 13 76 0.5 4.5 2.5 3.7 99 chrX 19769509 intron vfl - chrX 19769558 intron vfl - chrX 19769608 intron vfl - chrX_13_19765001 chrX_19765001 RAL-818 1654 chrX 19822832 19822864 chrX 19822998 19823027 12 165 3.0 2.5 2.8 3.2 195 chrX 19822832 intergenic not near genes chrX 19822930 intergenic skpE - chrX 19823027 intergenic skpE - chrX_12_19820001 chrX_19820001 RAL-818 1655 chrX 19842991 19843022 chrX 19843067 19843098 7 76 3.5 2.5 3.0 1.8 107 chrX 19842991 intron pico - chrX 19843044 intron pico - chrX 19843098 intron pico - chrX_7_19840001 chrX_19840001 RAL-818 1656 chrX 19884092 19884119 chrX 19884167 19884185 4 69 4.0 4.0 4.0 0.8 93 chrX 19884092 intron Hers + chrX 19884138 intron Hers + chrX 19884185 intron Hers + chrX_4_19880001 chrX_19880001 RAL-818 1657 chrX 19897385 19897412 chrX 19897462 19897489 7 77 1.0 2.5 1.8 2.5 104 chrX 19897385 intron Hers + chrX 19897437 intron Hers + chrX 19897489 intron Hers + chrX_7_19895001 chrX_19895001 RAL-818 1658 chrX 19978156 19978172 chrX 19978244 19978260 6 86 3.5 2.0 2.8 1.6 104 chrX 19978156 intergenic not near genes chrX 19978208 intergenic not near genes chrX 19978260 intergenic not near genes chrX_6_19975001 chrX_19975001 RAL-818 1659 chrX 20041530 20041562 chrX 20041610 20041642 7 80 2.0 0.0 1.0 3.5 112 chrX 20041530 intron Dop2R - chrX 20041586 intron Dop2R - chrX 20041642 intron Dop2R - chrX_7_20040001 chrX_20040001 RAL-818 1660 chrX 20124087 20124106 chrX 20124226 20124244 4 139 1.5 0.0 0.8 2.2 157 chrX 20124087 intron CG34331 + chrX 20124166 intron CG34331 + chrX 20124244 intron CG34331 + chrX_4_20120001 chrX_20120001 RAL-818 1661 chrX 20319513 20319530 chrX 20319593 20319610 5 80 0.5 1.5 1.0 2.5 97 chrX 20319513 intron CG1504 - chrX 20319562 intron CG1504 - chrX 20319610 intron CG1504 - chrX_5_20315001 chrX_20315001 RAL-818 1662 chrX 20374091 20374128 chrX 20374167 20374204 6 74 2.5 2.0 2.2 1.9 113 chrX 20374091 intergenic not near genes chrX 20374148 intergenic not near genes chrX 20374204 intergenic not near genes chrX_6_20370001 chrX_20370001 RAL-818 1663 chrX 20377325 20377348 chrX 20378792 20378815 hobo 9 1466 3.5 4.0 3.8 1.9 1490 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378815 intergenic not near genes chrX_9_20375001 chrX_20375001 RAL-818 1664 chrX 20426180 20426194 chrX 20428375 20428388 4 2194 28.5 32.5 30.5 0.1 2208 chrX 20426180 exon cactin + chrX 20427284 intergenic CG11710 -,CG15456 - chrX 20428388 exon CG11710 - chrX_4_20425001 chrX_20425001 RAL-818 1665 chrX 20484388 20484405 chrX 20484493 20484509 4 105 0.5 2.0 1.2 1.8 121 chrX 20484388 intron RhoGAP19D - chrX 20484448 intron RhoGAP19D - chrX 20484509 intron RhoGAP19D - chrX_4_20480001 chrX_20480001 RAL-818 1666 chrX 20504130 20504158 chrX 20505651 20505679 transib2 5 1521 1.5 4.5 3.0 1.2 1549 chrX 20504130 intron RhoGAP19D - chrX 20504904 intron RhoGAP19D - chrX 20505679 intron RhoGAP19D - chrX_5_20500001 chrX_20500001 RAL-818 1667 chrX 20528610 20528623 chrX 20528957 20528971 5 348 3.5 2.5 3.0 1.2 361 chrX 20528610 intergenic not near genes chrX 20528790 intergenic not near genes chrX 20528971 intergenic not near genes chrX_5_20525001 chrX_20525001 RAL-818 1668 chrX 20780230 20780237 chrX 20780455 20780462 5 225 2.0 5.5 3.8 1.0 232 chrX 20780230 intron,3` UTR shakB -,CG32507 - chrX 20780346 intron,3` UTR shakB -,CG32507 - chrX 20780462 intron,3` UTR shakB -,CG32507 - chrX_5_20780001 chrX_20780001 RAL-818 1669 chrX 20836729 20836759 chrX 20844330 20844353 roo 5 7600 2.0 2.0 2.0 1.7 7624 chrX 20836729 intron shakB - chrX 20840541 intron shakB - chrX 20844353 intron shakB - chrX_5_20840001 chrX_20840001 RAL-818 1670 chrX 20911911 20911920 chrX 20911987 20911997 5 75 4.5 4.0 4.2 1.0 86 chrX 20911911 intron shakB - chrX 20911954 intron shakB - chrX 20911997 intron shakB - chrX_5_20910001 chrX_20910001 RAL-818 1671 chrX 20940717 20940751 chrX 20942186 20942220 hobo 10 1468 3.0 2.0 2.5 2.9 1503 chrX 20940717 intergenic not near genes chrX 20941468 intergenic not near genes chrX 20942220 intergenic not near genes chrX_10_20940001 chrX_20940001 RAL-818 1672 chrX 21040455 21040472 chrX 21045388 21045399 4 4926 24.0 19.0 21.5 0.2 4944 chrX 21040455 3` UTR,5` UTR Ntf-2 +,CG15449 - chrX 21042927 intron Mgstl + chrX 21045399 intron Cbs + chrX_4_21040001 chrX_21040001 RAL-818 1673 chrX 21086129 21086165 chrX 21087158 21087177 jockey 6 1026 1.5 1.5 1.5 2.4 1048 chrX 21086129 intergenic not near genes chrX 21086653 intergenic not near genes chrX 21087177 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-818 1674 chrX 21088051 21088075 chrX 21088183 21088207 6 128 0.5 2.5 1.5 2.4 156 chrX 21088051 intergenic not near genes chrX 21088129 intergenic not near genes chrX 21088207 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-818 1675 chrX 21255501 21255512 chrX 21255627 21255638 4 126 1.5 2.0 1.8 1.4 137 chrX 21255501 intron CG32521 - chrX 21255570 intron CG32521 - chrX 21255638 intron CG32521 - chrX_4_21255001 chrX_21255001 RAL-818 1676 chrX 21264733 21264756 chrX 21264809 21264832 7 75 3.5 4.5 4.0 1.4 99 chrX 21264733 intron CG32521 - chrX 21264782 intron CG32521 - chrX 21264832 intron CG32521 - chrX_7_21260001 chrX_21260001 RAL-818 1677 chrX 21408095 21408115 chrX 21408172 21408177 5 74 2.5 0.5 1.5 2.0 82 chrX 21408095 intergenic not near genes chrX 21408136 intergenic not near genes chrX 21408177 intergenic not near genes chrX_5_21405001 chrX_21405001 RAL-818 1678 chrX 21455216 21455225 chrX 21455395 21455404 4 179 0.5 0.0 0.2 3.3 188 chrX 21455216 intron CG42343 - chrX 21455310 intron CG42343 - chrX 21455404 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-818 1679 chrX 21458694 21458725 chrX 21464129 21464161 Ivk 4 5436 0.0 3.0 1.5 1.6 5467 chrX 21458694 intergenic not near genes chrX 21461428 intergenic not near genes chrX 21464161 intergenic not near genes chrX_4_21460001 chrX_21460001 RAL-818 1680 chrX 21467012 21467044 chrX 21467096 21467128 11 83 0.5 1.5 1.0 5.5 116 chrX 21467012 intergenic CR45507 - chrX 21467070 intergenic CR45507 - chrX 21467128 3` UTR CR45507 - chrX_11_21465001 chrX_21465001 RAL-818 1681 chrX 21474402 21474435 chrX 21474768 21474801 1731 11 366 2.0 1.5 1.8 3.9 399 chrX 21474402 intergenic not near genes chrX 21474602 intergenic not near genes chrX 21474801 intergenic not near genes chrX_11_21470001 chrX_21470001 RAL-818 1682 chrX 21516985 21517020 chrX 21517064 21517099 11 79 3.0 2.0 2.5 3.1 114 chrX 21516985 intron CR45082 - chrX 21517042 intron CR45082 - chrX 21517099 intron CR45082 - chrX_11_21515001 chrX_21515001 RAL-818 1683 chrX 21574860 21574883 chrX 21577215 21577232 6 2354 17.0 6.5 11.8 0.5 2372 chrX 21574860 intergenic not near genes chrX 21576046 intergenic not near genes chrX 21577232 intergenic not near genes chrX_6_21575001 chrX_21575001 RAL-818 1684 chrX 21574392 21574424 chrX 21577382 21577415 4 2991 11.0 9.5 10.2 0.4 3023 chrX 21574392 intergenic not near genes chrX 21575904 intergenic not near genes chrX 21577415 intergenic not near genes chrX_4_21575001 chrX_21575001 RAL-818 1685 chrX 22448278 22448280 chrX 22448417 22448419 4 138 4.0 1.0 2.5 1.1 141 chrX 22448278 intron CG14615 - chrX 22448348 intron CG14615 - chrX 22448419 intron CG14615 - chrX_4_22445001 chrX_22445001 RAL-818 1686 chrX 22522640 22522652 chrX 22525460 22525472 NOF 5 2820 0.0 0.0 0.0 5.0 2832 chrX 22522640 intron CG17600 + chrX 22524056 intron CG17600 + chrX 22525472 intron CG17600 + chrX_5_22520001 chrX_22520001 RAL-818 1687 chrX 22697509 22697519 chrX 22701806 22701816 Juan 6 4297 2.5 4.0 3.2 1.4 4307 chrX 22697509 intron CR44997 + chrX 22699662 intron CR44997 + chrX 22701816 intron CR44997 + chrX_6_22695001 chrX_22695001 RAL-818 1688 chrX 22798772 22798790 chrX 22798889 22798892 5 114 1.0 1.5 1.2 2.3 120 chrX 22798772 intergenic not near genes chrX 22798832 intergenic not near genes chrX 22798892 intergenic not near genes chrX_5_22795001 chrX_22795001 RAL-818 1689 chrX 22922517 22922551 chrX 22922596 22922631 4 78 1.0 2.5 1.8 1.4 114 chrX 22922517 intergenic not near genes chrX 22922574 intergenic not near genes chrX 22922631 intergenic not near genes chrX_4_22920001 chrX_22920001 RAL-818 1690 chrX 22996308 22996338 chrX 23003542 23003572 roo 7 7234 3.0 1.0 2.0 2.3 7264 chrX 22996308 intron,intron stnA -,stnB - chrX 22999940 intron,intron stnA -,stnB - chrX 23003572 intron,intron stnA -,stnB - chrX_7_22995001 chrX_22995001 RAL-818 1691 chrY 975803 975819 chrY 975883 975899 5 79 68.5 89.0 78.8 0.1 96 chrY 975803 intergenic not near genes chrY 975851 intergenic not near genes chrY 975899 intergenic not near genes chrY_5_975001 chrY_975001 RAL-818