SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47464 47488 chr2L 52568 52593 jockey 17 5103 9.5 9.0 9.2 1.7 5129 chr2L 47464 intron Cda5 - chr2L 50028 intron Cda5 - chr2L 52593 intron Cda5 - chr2L_17_50001 chr2L_50001 RAL-812 2 chr2L 45954 45985 chr2L 53388 53419 jockey 4 7434 19.5 13.5 16.5 0.2 7465 chr2L 45954 intron Cda5 - chr2L 49686 intron Cda5 - chr2L 53419 intron Cda5 - chr2L_4_45001 chr2L_45001 RAL-812 3 chr2L 73788 73812 chr2L 73897 73921 5 109 13.0 11.0 12.0 0.4 133 chr2L 73788 3` UTR,intron CR44987 -,galectin + chr2L 73854 intron galectin + chr2L 73921 intron galectin + chr2L_5_70001 chr2L_70001 RAL-812 4 chr2L 325129 325148 chr2L 325207 325223 5 77 6.5 5.0 5.8 0.7 94 chr2L 325129 intron Plc21C + chr2L 325176 intron Plc21C + chr2L 325223 intron Plc21C + chr2L_5_325001 chr2L_325001 RAL-812 5 chr2L 438126 438139 chr2L 438227 438240 4 101 7.5 5.5 6.5 0.5 114 chr2L 438126 intron ex + chr2L 438183 intron ex + chr2L 438240 intron ex + chr2L_4_435001 chr2L_435001 RAL-812 6 chr2L 590335 590343 chr2L 590427 590435 4 92 3.0 4.5 3.8 0.8 100 chr2L 590335 intron Gsc - chr2L 590385 intron Gsc - chr2L 590435 intron Gsc - chr2L_4_590001 chr2L_590001 RAL-812 7 chr2L 658284 658310 chr2L 658370 658396 5 85 8.0 10.0 9.0 0.5 112 chr2L 658284 intron ds - chr2L 658340 intron ds - chr2L 658396 intron ds - chr2L_5_655001 chr2L_655001 RAL-812 8 chr2L 666836 666863 chr2L 666907 666934 4 72 15.0 14.5 14.8 0.3 98 chr2L 666836 intron ds - chr2L 666885 intron ds - chr2L 666934 intron ds - chr2L_4_665001 chr2L_665001 RAL-812 9 chr2L 668440 668461 chr2L 668517 668541 5 79 10.0 7.0 8.5 0.5 101 chr2L 668440 intron ds - chr2L 668490 intron ds - chr2L 668541 intron ds - chr2L_5_665001 chr2L_665001 RAL-812 10 chr2L 686922 686935 chr2L 695961 695975 roo 8 9039 2.0 4.5 3.2 1.9 9053 chr2L 686922 intron ds - chr2L 691448 intron ds - chr2L 695975 intron ds - chr2L_8_690001 chr2L_690001 RAL-812 11 chr2L 764555 764591 chr2L 764655 764672 9 96 0.0 4.0 2.0 3.0 117 chr2L 764555 intergenic not near genes chr2L 764614 intergenic not near genes chr2L 764672 intergenic not near genes chr2L_9_760001 chr2L_760001 RAL-812 12 chr2L 770471 770494 chr2L 772244 772275 Bari1 8 1780 2.0 3.5 2.8 2.1 1804 chr2L 770471 intergenic not near genes chr2L 771373 intergenic not near genes chr2L 772275 intergenic CR44614 + chr2L_8_770001 chr2L_770001 RAL-812 13 chr2L 858347 858367 chr2L 858482 858500 9 135 12.5 13.5 13.0 0.6 153 chr2L 858347 intergenic not near genes chr2L 858424 intergenic not near genes chr2L 858500 intergenic not near genes chr2L_9_855001 chr2L_855001 RAL-812 14 chr2L 877840 877860 chr2L 877921 877941 11 81 8.0 1.5 4.8 1.9 101 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877890 3` UTR,intron CG15824 -,ninaA + chr2L 877941 3` UTR,intron CG15824 -,ninaA + chr2L_11_875001 chr2L_875001 RAL-812 15 chr2L 976880 976910 chr2L 984516 984546 roo 8 7636 2.0 2.0 2.0 2.7 7666 chr2L 976880 intergenic not near genes chr2L 980713 intergenic not near genes chr2L 984546 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-812 16 chr2L 1035559 1035594 chr2L 1035636 1035671 18 77 4.0 3.5 3.8 3.8 112 chr2L 1035559 intron IA-2 - chr2L 1035615 intron IA-2 - chr2L 1035671 intron IA-2 - chr2L_18_1035001 chr2L_1035001 RAL-812 17 chr2L 1066095 1066124 chr2L 1066174 1066205 12 81 9.0 10.5 9.8 1.1 110 chr2L 1066095 intron S - chr2L 1066150 intron S - chr2L 1066205 intron S - chr2L_12_1065001 chr2L_1065001 RAL-812 18 chr2L 1126676 1126692 chr2L 1126752 1126767 5 76 12.0 9.5 10.8 0.4 91 chr2L 1126676 intron Pino - chr2L 1126722 intron Pino - chr2L 1126767 intron Pino - chr2L_5_1125001 chr2L_1125001 RAL-812 19 chr2L 1220131 1220161 chr2L 1227596 1227627 blood 13 7466 1.5 3.0 2.2 4.1 7496 chr2L 1220131 intron CG42329 + chr2L 1223879 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_13_1220001 chr2L_1220001 RAL-812 20 chr2L 1322027 1322048 chr2L 1322116 1322136 5 86 2.5 2.5 2.5 1.4 109 chr2L 1322027 intergenic not near genes chr2L 1322082 intergenic not near genes chr2L 1322136 intergenic not near genes chr2L_5_1320001 chr2L_1320001 RAL-812 21 chr2L 1334832 1334855 chr2L 1334917 1334940 4 83 11.5 8.5 10.0 0.4 108 chr2L 1334832 exon CG5440 + chr2L 1334886 3` UTR CG5440 + chr2L 1334940 3` UTR CG5440 + chr2L_4_1330001 chr2L_1330001 RAL-812 22 chr2L 1379015 1379039 chr2L 1379111 1379136 5 96 13.5 6.5 10.0 0.5 121 chr2L 1379015 intergenic not near genes chr2L 1379076 intergenic not near genes chr2L 1379136 intergenic not near genes chr2L_5_1375001 chr2L_1375001 RAL-812 23 chr2L 1410707 1410739 chr2L 1410795 1410827 10 88 12.5 11.0 11.8 0.8 120 chr2L 1410707 intron lea - chr2L 1410767 intron lea - chr2L 1410827 intron lea - chr2L_10_1410001 chr2L_1410001 RAL-812 24 chr2L 1466061 1466086 chr2L 1466490 1466515 5 429 10.5 3.5 7.0 0.6 454 chr2L 1466061 intergenic not near genes chr2L 1466288 intergenic not near genes chr2L 1466515 intergenic not near genes chr2L_5_1465001 chr2L_1465001 RAL-812 25 chr2L 1570684 1570723 chr2L 1573556 1573592 F-element 16 2872 2.5 2.0 2.2 5.0 2908 chr2L 1570684 intron haf + chr2L 1572138 intron haf + chr2L 1573592 intron haf + chr2L_16_1570001 chr2L_1570001 RAL-812 26 chr2L 1615388 1615412 chr2L 1615470 1615494 9 82 0.0 4.0 2.0 3.0 106 chr2L 1615388 intergenic not near genes chr2L 1615441 intergenic not near genes chr2L 1615494 intergenic not near genes chr2L_9_1615001 chr2L_1615001 RAL-812 27 chr2L 1678984 1678999 chr2L 1686449 1686463 blood 4 7463 3.5 4.0 3.8 0.8 7479 chr2L 1678984 intron chinmo + chr2L 1682724 intron chinmo + chr2L 1686463 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-812 28 chr2L 1711357 1711367 chr2L 1711680 1711691 mdg3 4 324 6.0 5.0 5.5 0.6 334 chr2L 1711357 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711524 3` UTR frtz - chr2L 1711691 3` UTR frtz - chr2L_4_1710001 chr2L_1710001 RAL-812 29 chr2L 1721823 1721853 chr2L 1721907 1721937 9 82 0.0 2.0 1.0 4.5 114 chr2L 1721823 intron Rim2 - chr2L 1721880 intron Rim2 - chr2L 1721937 intron Rim2 - chr2L_9_1720001 chr2L_1720001 RAL-812 30 chr2L 1828401 1828430 chr2L 1828485 1828514 17 83 3.0 2.0 2.5 4.9 113 chr2L 1828401 intergenic not near genes chr2L 1828458 intergenic not near genes chr2L 1828514 intergenic not near genes chr2L_17_1825001 chr2L_1825001 RAL-812 31 chr2L 1842296 1842310 chr2L 1842370 1842385 6 75 5.5 6.0 5.8 0.9 89 chr2L 1842296 intron wry + chr2L 1842340 intron wry + chr2L 1842385 intron wry + chr2L_6_1840001 chr2L_1840001 RAL-812 32 chr2L 1849328 1849343 chr2L 1849419 1849434 5 91 5.0 1.5 3.2 1.2 106 chr2L 1849328 intron wry + chr2L 1849381 intron wry + chr2L 1849434 intron wry + chr2L_5_1845001 chr2L_1845001 RAL-812 33 chr2L 1883438 1883443 chr2L 1884018 1884023 4 580 3.5 9.5 6.5 0.5 585 chr2L 1883438 intron CG15358 - chr2L 1883730 intron CG15358 - chr2L 1884023 exon CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-812 34 chr2L 1917194 1917219 chr2L 1917272 1917297 6 77 10.5 10.5 10.5 0.5 103 chr2L 1917194 intron CG7337 + chr2L 1917246 intron CG7337 + chr2L 1917297 intron CG7337 + chr2L_6_1915001 chr2L_1915001 RAL-812 35 chr2L 1925493 1925501 chr2L 1925565 1925578 4 76 3.5 2.0 2.8 1.1 85 chr2L 1925493 intron CG7337 + chr2L 1925536 intron CG7337 + chr2L 1925578 intron CG7337 + chr2L_4_1925001 chr2L_1925001 RAL-812 36 chr2L 1993196 1993226 chr2L 1993282 1993312 14 84 3.0 2.0 2.5 4.0 116 chr2L 1993196 intergenic not near genes chr2L 1993254 intergenic not near genes chr2L 1993312 intergenic not near genes chr2L_14_1990001 chr2L_1990001 RAL-812 37 chr2L 2075526 2075540 chr2L 2075612 2075626 5 85 9.0 14.5 11.8 0.4 100 chr2L 2075526 intron dpr3 - chr2L 2075576 intron dpr3 - chr2L 2075626 intron dpr3 - chr2L_5_2075001 chr2L_2075001 RAL-812 38 chr2L 2100384 2100404 chr2L 2109533 2109540 roo 9 9147 2.0 3.5 2.8 2.4 9156 chr2L 2100384 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109540 intron dpr3 - chr2L_9_2100001 chr2L_2100001 RAL-812 39 chr2L 2112134 2112143 chr2L 2119774 2119791 opus 7 7650 3.5 5.0 4.2 1.3 7657 chr2L 2112134 intergenic not near genes chr2L 2115962 intergenic not near genes chr2L 2119791 intergenic not near genes chr2L_7_2115001 chr2L_2115001 RAL-812 40 chr2L 2198368 2198392 chr2L 2198446 2198472 4 80 8.0 5.5 6.8 0.5 104 chr2L 2198368 intergenic CG34172 - chr2L 2198420 intergenic not near genes chr2L 2198472 intergenic not near genes chr2L_4_2195001 chr2L_2195001 RAL-812 41 chr2L 2293287 2293292 chr2L 2293376 2293384 4 91 6.0 14.0 10.0 0.4 97 chr2L 2293287 intergenic not near genes chr2L 2293336 intergenic not near genes chr2L 2293384 intergenic not near genes chr2L_4_2290001 chr2L_2290001 RAL-812 42 chr2L 2294047 2294060 chr2L 2299250 2299265 copia 4 5203 3.5 5.5 4.5 0.7 5218 chr2L 2294047 intergenic not near genes chr2L 2296656 intergenic not near genes chr2L 2299265 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-812 43 chr2L 2425187 2425213 chr2L 2425280 2425306 4 93 3.5 3.5 3.5 0.9 119 chr2L 2425187 intergenic CG44139 + chr2L 2425246 intergenic CG44139 + chr2L 2425306 intergenic CG44139 + chr2L_4_2425001 chr2L_2425001 RAL-812 44 chr2L 2427382 2427398 chr2L 2427468 2427483 4 86 2.0 1.0 1.5 1.6 101 chr2L 2427382 3` UTR CR44912 - chr2L 2427432 3` UTR CR44912 - chr2L 2427483 3` UTR CR44912 - chr2L_4_2425001 chr2L_2425001 RAL-812 45 chr2L 2459169 2459183 chr2L 2459264 2459278 4 95 4.5 2.5 3.5 0.9 109 chr2L 2459169 3` UTR dpp + chr2L 2459224 3` UTR dpp + chr2L 2459278 3` UTR dpp + chr2L_4_2455001 chr2L_2455001 RAL-812 46 chr2L 2503496 2503564 chr2L 2503634 2503660 5 116 1.5 3.5 2.5 1.4 164 chr2L 2503496 intergenic not near genes chr2L 2503578 intergenic not near genes chr2L 2503660 intergenic not near genes chr2L_5_2500001 chr2L_2500001 RAL-812 47 chr2L 2618045 2618065 chr2L 2618124 2618143 8 79 5.5 7.5 6.5 1.1 98 chr2L 2618045 intergenic not near genes chr2L 2618094 intergenic not near genes chr2L 2618143 intergenic not near genes chr2L_8_2615001 chr2L_2615001 RAL-812 48 chr2L 2645574 2645599 chr2L 2645700 2645726 5 127 10.0 4.5 7.2 0.6 152 chr2L 2645574 intergenic CR43852 + chr2L 2645650 intergenic CR43852 + chr2L 2645726 intergenic CR43852 + chr2L_5_2645001 chr2L_2645001 RAL-812 49 chr2L 2653080 2653091 chr2L 2654703 2654714 5 1623 21.0 24.5 22.8 0.2 1634 chr2L 2653080 5` UTR Prosbeta4R1 + chr2L 2653897 3` UTR Prosbeta4R1 + chr2L 2654714 exon Or23a + chr2L_5_2650001 chr2L_2650001 RAL-812 50 chr2L 2661209 2661232 chr2L 2663032 2663070 I-element 5 1828 1.5 2.0 1.8 1.8 1861 chr2L 2661209 intergenic not near genes chr2L 2662140 intergenic not near genes chr2L 2663070 intergenic not near genes chr2L_5_2660001 chr2L_2660001 RAL-812 51 chr2L 2667628 2667650 chr2L 2667705 2667729 9 77 5.0 7.5 6.2 1.2 101 chr2L 2667628 intergenic not near genes chr2L 2667678 intergenic not near genes chr2L 2667729 intergenic not near genes chr2L_9_2665001 chr2L_2665001 RAL-812 52 chr2L 2782845 2782850 chr2L 2782921 2782927 5 77 6.5 2.5 4.5 0.9 82 chr2L 2782845 intron Syt1 - chr2L 2782886 intron Syt1 - chr2L 2782927 intron Syt1 - chr2L_5_2780001 chr2L_2780001 RAL-812 53 chr2L 2933301 2933324 chr2L 2935477 2935501 pogo 8 2176 4.5 4.0 4.2 1.5 2200 chr2L 2933301 intron lilli + chr2L 2934401 intron lilli + chr2L 2935501 intron lilli + chr2L_8_2930001 chr2L_2930001 RAL-812 54 chr2L 2975640 2975670 chr2L 2978948 2978975 6 3307 26.5 26.0 26.2 0.2 3335 chr2L 2975640 exon CG9641 - chr2L 2977308 exon CG3165 + chr2L 2978975 exon CG9643 - chr2L_6_2975001 chr2L_2975001 RAL-812 55 chr2L 3073030 3073055 chr2L 3078233 3078257 copia 4 5203 3.0 2.0 2.5 1.1 5227 chr2L 3073030 intron toc - chr2L 3075644 intron toc - chr2L 3078257 intron toc - chr2L_4_3075001 chr2L_3075001 RAL-812 56 chr2L 3108871 3108889 chr2L 3108948 3108966 4 77 4.0 1.0 2.5 1.1 95 chr2L 3108871 intron toc - chr2L 3108918 intron toc - chr2L 3108966 intron toc - chr2L_4_3105001 chr2L_3105001 RAL-812 57 chr2L 3192212 3192233 chr2L 3192323 3192344 5 111 10.0 11.5 10.8 0.4 132 chr2L 3192212 exon CG34393 - chr2L 3192278 intron CG34393 - chr2L 3192344 intron CG34393 - chr2L_5_3190001 chr2L_3190001 RAL-812 58 chr2L 3236715 3236746 chr2L 3236800 3236831 9 85 8.5 9.0 8.8 0.9 116 chr2L 3236715 intergenic not near genes chr2L 3236773 intergenic not near genes chr2L 3236831 intergenic not near genes chr2L_9_3235001 chr2L_3235001 RAL-812 59 chr2L 3251498 3251514 chr2L 3259063 3259079 springer 7 7565 7.0 4.5 5.8 1.0 7581 chr2L 3251498 intergenic not near genes chr2L 3255288 intergenic not near genes chr2L 3259079 intergenic not near genes chr2L_7_3255001 chr2L_3255001 RAL-812 60 chr2L 3271153 3271176 chr2L 3271274 3271298 6 119 10.5 9.0 9.8 0.6 145 chr2L 3271153 exon CG3347 + chr2L 3271226 exon CG3347 + chr2L 3271298 exon CG3347 + chr2L_6_3270001 chr2L_3270001 RAL-812 61 chr2L 3291238 3291266 chr2L 3291318 3291329 14 78 4.5 4.0 4.2 2.7 91 chr2L 3291238 intergenic CG9664 - chr2L 3291284 3` UTR CG9664 - chr2L 3291329 3` UTR CG9664 - chr2L_14_3290001 chr2L_3290001 RAL-812 62 chr2L 3323265 3323279 chr2L 3323371 3323386 6 106 8.0 8.5 8.2 0.7 121 chr2L 3323265 intergenic CG8837 + chr2L 3323326 intergenic CG8837 + chr2L 3323386 intergenic CG8837 + chr2L_6_3320001 chr2L_3320001 RAL-812 63 chr2L 3351220 3351239 chr2L 3351311 3351330 6 91 10.5 13.5 12.0 0.5 110 chr2L 3351220 intron E23 - chr2L 3351275 intron E23 - chr2L 3351330 intron E23 - chr2L_6_3350001 chr2L_3350001 RAL-812 64 chr2L 3367014 3367032 chr2L 3367163 3367182 7 150 8.0 7.0 7.5 0.8 168 chr2L 3367014 intron CG34394 - chr2L 3367098 intron CG34394 - chr2L 3367182 intron CG34394 - chr2L_7_3365001 chr2L_3365001 RAL-812 65 chr2L 3388607 3388627 chr2L 3388848 3388868 pogo 4 241 1.0 1.0 1.0 2.0 261 chr2L 3388607 intergenic CG42460 - chr2L 3388738 intergenic CG42460 - chr2L 3388868 intergenic CG42460 -,CR44791 + chr2L_4_3385001 chr2L_3385001 RAL-812 66 chr2L 3395029 3395047 chr2L 3395111 3395129 4 81 3.0 7.0 5.0 0.7 100 chr2L 3395029 intergenic not near genes chr2L 3395079 intergenic not near genes chr2L 3395129 intergenic not near genes chr2L_4_3395001 chr2L_3395001 RAL-812 67 chr2L 3425928 3425939 chr2L 3426012 3426022 5 84 1.5 2.5 2.0 1.7 94 chr2L 3425928 intron pgant2 - chr2L 3425975 intron pgant2 - chr2L 3426022 intron pgant2 - chr2L_5_3425001 chr2L_3425001 RAL-812 68 chr2L 3494421 3494453 chr2L 3494544 3494569 4 121 10.5 10.0 10.2 0.4 148 chr2L 3494421 3` UTR tim - chr2L 3494495 3` UTR tim - chr2L 3494569 3` UTR tim - chr2L_4_3490001 chr2L_3490001 RAL-812 69 chr2L 3508352 3508371 chr2L 3508430 3508449 5 78 0.5 2.5 1.5 2.0 97 chr2L 3508352 intergenic tim -,CR45299 + chr2L 3508400 intergenic CR45299 +,tim - chr2L 3508449 intergenic CR45299 +,tim - chr2L_5_3505001 chr2L_3505001 RAL-812 70 chr2L 3536112 3536124 chr2L 3536200 3536212 5 88 12.0 8.0 10.0 0.5 100 chr2L 3536112 intergenic not near genes chr2L 3536162 intergenic not near genes chr2L 3536212 intergenic not near genes chr2L_5_3535001 chr2L_3535001 RAL-812 71 chr2L 3536809 3536835 chr2L 3536887 3536913 6 77 7.5 7.0 7.2 0.7 104 chr2L 3536809 intergenic not near genes chr2L 3536861 intergenic not near genes chr2L 3536913 intergenic not near genes chr2L_6_3535001 chr2L_3535001 RAL-812 72 chr2L 3850393 3850411 chr2L 3850477 3850495 4 83 7.0 8.0 7.5 0.5 102 chr2L 3850393 intergenic not near genes chr2L 3850444 intergenic not near genes chr2L 3850495 intergenic not near genes chr2L_4_3850001 chr2L_3850001 RAL-812 73 chr2L 3891893 3891927 chr2L 3891978 3892012 8 85 10.0 9.0 9.5 0.8 119 chr2L 3891893 intron capu - chr2L 3891952 intron capu - chr2L 3892012 intron capu - chr2L_8_3890001 chr2L_3890001 RAL-812 74 chr2L 3935914 3935939 chr2L 3936002 3936028 5 88 12.5 14.5 13.5 0.3 114 chr2L 3935914 intron fred - chr2L 3935971 intron fred - chr2L 3936028 intron fred - chr2L_5_3935001 chr2L_3935001 RAL-812 75 chr2L 3943795 3943825 chr2L 3943886 3943916 7 91 1.0 2.5 1.8 2.5 121 chr2L 3943795 intron fred - chr2L 3943856 intron fred - chr2L 3943916 intron fred - chr2L_7_3940001 chr2L_3940001 RAL-812 76 chr2L 3985970 3985984 chr2L 3986048 3986062 4 78 1.5 3.0 2.2 1.2 92 chr2L 3985970 intron fred - chr2L 3986016 intron fred - chr2L 3986062 intron fred - chr2L_4_3985001 chr2L_3985001 RAL-812 77 chr2L 3992502 3992517 chr2L 3992671 3992686 5 169 7.0 11.0 9.0 0.5 184 chr2L 3992502 intergenic not near genes chr2L 3992594 intergenic not near genes chr2L 3992686 intergenic not near genes chr2L_5_3990001 chr2L_3990001 RAL-812 78 chr2L 4008280 4008286 chr2L 4008363 4008371 5 85 9.0 12.0 10.5 0.4 91 chr2L 4008280 intergenic CG43773 +,CG43774 + chr2L 4008326 intergenic CG43774 +,CG43773 + chr2L 4008371 intergenic CG43774 +,CG43773 + chr2L_5_4005001 chr2L_4005001 RAL-812 79 chr2L 4037549 4037572 chr2L 4037994 4038013 7 443 6.5 4.0 5.2 1.1 464 chr2L 4037549 intron ed + chr2L 4037781 intron ed + chr2L 4038013 intron ed + chr2L_7_4035001 chr2L_4035001 RAL-812 80 chr2L 4060176 4060188 chr2L 4060252 4060264 4 76 6.0 8.0 7.0 0.5 88 chr2L 4060176 intron ed + chr2L 4060220 intron ed + chr2L 4060264 intron ed + chr2L_4_4060001 chr2L_4060001 RAL-812 81 chr2L 4066045 4066064 chr2L 4068861 4068889 Juan 4 2823 1.0 3.0 2.0 1.3 2844 chr2L 4066045 intron ed + chr2L 4067467 intron ed + chr2L 4068889 intron ed + chr2L_4_4065001 chr2L_4065001 RAL-812 82 chr2L 4150626 4150658 chr2L 4150706 4150716 6 68 0.0 3.5 1.8 2.1 90 chr2L 4150626 exon CG2955 + chr2L 4150671 exon CG2955 + chr2L 4150716 exon CG2955 + chr2L_6_4150001 chr2L_4150001 RAL-812 83 chr2L 4181292 4181305 chr2L 4183905 4183937 Burdock 4 2627 3.5 3.5 3.5 0.9 2645 chr2L 4181292 intergenic not near genes chr2L 4182614 intergenic not near genes chr2L 4183937 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-812 84 chr2L 4265659 4265684 chr2L 4265749 4265774 4 90 5.5 5.5 5.5 0.6 115 chr2L 4265659 intergenic not near genes chr2L 4265716 intergenic not near genes chr2L 4265774 intergenic not near genes chr2L_4_4265001 chr2L_4265001 RAL-812 85 chr2L 4317879 4317913 chr2L 4317957 4317991 9 77 2.5 5.5 4.0 1.8 112 chr2L 4317879 intron tutl + chr2L 4317935 intron tutl + chr2L 4317991 intron tutl + chr2L_9_4315001 chr2L_4315001 RAL-812 86 chr2L 4351473 4351501 chr2L 4351549 4351577 17 75 3.0 5.5 4.2 3.3 104 chr2L 4351473 intergenic CR44700 + chr2L 4351525 intergenic CR44700 + chr2L 4351577 intergenic CR44700 + chr2L_17_4350001 chr2L_4350001 RAL-812 87 chr2L 4439012 4439032 chr2L 4439098 4439117 4 85 7.0 8.5 7.8 0.5 105 chr2L 4439012 intron CG15431 - chr2L 4439064 intron CG15431 - chr2L 4439117 5` UTR CG15431 - chr2L_4_4435001 chr2L_4435001 RAL-812 88 chr2L 4477134 4477164 chr2L 4477328 4477358 7 195 21.5 17.0 19.2 0.3 224 chr2L 4477134 intergenic ine -,dp - chr2L 4477246 intergenic dp -,ine - chr2L 4477358 intergenic dp -,ine - chr2L_7_4475001 chr2L_4475001 RAL-812 89 chr2L 4601702 4601736 chr2L 4609143 4609177 mdg1 16 7441 4.0 5.5 4.8 2.8 7475 chr2L 4601702 intron dp - chr2L 4605440 intron dp - chr2L 4609177 intron dp - chr2L_16_4605001 chr2L_4605001 RAL-812 90 chr2L 4819501 4819507 chr2L 4819624 4819630 5 123 5.0 5.0 5.0 0.8 129 chr2L 4819501 intergenic not near genes chr2L 4819566 intergenic not near genes chr2L 4819630 intergenic not near genes chr2L_5_4815001 chr2L_4815001 RAL-812 91 chr2L 4869466 4869495 chr2L 4869546 4869575 8 79 10.0 13.5 11.8 0.6 109 chr2L 4869466 intron pog + chr2L 4869520 intron pog + chr2L 4869575 intron pog + chr2L_8_4865001 chr2L_4865001 RAL-812 92 chr2L 4918164 4918188 chr2L 4923237 4923261 jockey 5 5072 1.0 1.0 1.0 2.5 5097 chr2L 4918164 intron hoe1 - chr2L 4920712 intron hoe1 - chr2L 4923261 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-812 93 chr2L 5000986 5001021 chr2L 5001077 5001112 11 91 7.0 10.5 8.8 1.1 126 chr2L 5000986 intron Rtnl1 - chr2L 5001049 intron Rtnl1 - chr2L 5001112 intron Rtnl1 - chr2L_11_5000001 chr2L_5000001 RAL-812 94 chr2L 5038741 5038755 chr2L 5038811 5038844 5 81 11.5 13.5 12.5 0.4 103 chr2L 5038741 exon,5` UTR CG14042 +,SP555 + chr2L 5038792 3` UTR,5` UTR CG14042 +,SP555 + chr2L 5038844 3` UTR,5` UTR CG14042 +,SP555 + chr2L_5_5035001 chr2L_5035001 RAL-812 95 chr2L 5040685 5040717 chr2L 5040781 5040813 7 96 3.0 4.5 3.8 1.5 128 chr2L 5040685 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040749 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040813 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_7_5040001 chr2L_5040001 RAL-812 96 chr2L 5092423 5092429 chr2L 5092510 5092516 4 87 1.0 1.0 1.0 2.0 93 chr2L 5092423 intron pgant5 - chr2L 5092470 intron pgant5 - chr2L 5092516 intron pgant5 - chr2L_4_5090001 chr2L_5090001 RAL-812 97 chr2L 5237905 5237943 chr2L 5237995 5238013 8 83 11.0 15.0 13.0 0.6 108 chr2L 5237905 intron tkv - chr2L 5237959 intron tkv - chr2L 5238013 intron tkv - chr2L_8_5235001 chr2L_5235001 RAL-812 98 chr2L 5258760 5258790 chr2L 5258838 5258867 7 78 3.5 3.0 3.2 1.7 107 chr2L 5258760 intron tkv - chr2L 5258814 intron tkv - chr2L 5258867 intron tkv - chr2L_7_5255001 chr2L_5255001 RAL-812 99 chr2L 5475149 5475163 chr2L 5475254 5475268 6 105 2.0 1.0 1.5 2.4 119 chr2L 5475149 intergenic not near genes chr2L 5475208 intergenic not near genes chr2L 5475268 intergenic not near genes chr2L_6_5475001 chr2L_5475001 RAL-812 100 chr2L 5488020 5488032 chr2L 5488100 5488112 4 80 2.5 1.5 2.0 1.3 92 chr2L 5488020 intergenic not near genes chr2L 5488066 intergenic not near genes chr2L 5488112 intergenic not near genes chr2L_4_5485001 chr2L_5485001 RAL-812 101 chr2L 5594319 5594358 chr2L 5594411 5594445 5 88 2.5 0.0 1.2 2.3 126 chr2L 5594319 intergenic not near genes chr2L 5594382 intergenic not near genes chr2L 5594445 intergenic not near genes chr2L_5_5590001 chr2L_5590001 RAL-812 102 chr2L 5725212 5725231 chr2L 5725298 5725317 4 86 1.5 0.0 0.8 2.2 105 chr2L 5725212 5` UTR CG11030 + chr2L 5725264 intron CG11030 + chr2L 5725317 intron CG11030 + chr2L_4_5725001 chr2L_5725001 RAL-812 103 chr2L 5755848 5755869 chr2L 5756123 5756143 8 274 10.5 7.0 8.8 0.8 295 chr2L 5755848 intron CG11030 + chr2L 5755996 intron CG11030 + chr2L 5756143 intron CG11030 + chr2L_8_5755001 chr2L_5755001 RAL-812 104 chr2L 5805955 5805975 chr2L 5806172 5806192 5 217 3.0 3.0 3.0 1.2 237 chr2L 5805955 intron CG11034 + chr2L 5806074 intron CG11034 + chr2L 5806192 intron CG11034 + chr2L_5_5805001 chr2L_5805001 RAL-812 105 chr2L 5827727 5827740 chr2L 5836720 5836748 roo 7 9004 6.5 3.5 5.0 1.2 9021 chr2L 5827727 intron TrissinR + chr2L 5832238 intron TrissinR + chr2L 5836748 intron TrissinR + chr2L_7_5830001 chr2L_5830001 RAL-812 106 chr2L 5842635 5842654 chr2L 5843044 5843063 7 409 0.5 15.0 7.8 0.8 428 chr2L 5842635 intron TrissinR + chr2L 5842849 intron TrissinR + chr2L 5843063 intron TrissinR + chr2L_7_5840001 chr2L_5840001 RAL-812 107 chr2L 5904462 5904475 chr2L 5904542 5904555 10 80 4.5 0.0 2.2 3.1 93 chr2L 5904462 intron CG9021 - chr2L 5904508 intron CG9021 - chr2L 5904555 intron CG9021 - chr2L_10_5900001 chr2L_5900001 RAL-812 108 chr2L 5942028 5942037 chr2L 5942120 5942129 4 91 5.5 7.0 6.2 0.6 101 chr2L 5942028 5` UTR CR45289 + chr2L 5942078 5` UTR CR45289 + chr2L 5942129 5` UTR CR45289 + chr2L_4_5940001 chr2L_5940001 RAL-812 109 chr2L 6011362 6011379 chr2L 6011502 6011519 4 140 7.0 10.5 8.8 0.4 157 chr2L 6011362 intron CG9098 - chr2L 6011440 intron CG9098 - chr2L 6011519 intron CG9098 - chr2L_4_6010001 chr2L_6010001 RAL-812 110 chr2L 6050441 6050467 chr2L 6050545 6050571 6 104 1.5 2.5 2.0 2.0 130 chr2L 6050441 intergenic CG12393 +,CG9135 + chr2L 6050506 intergenic CG12393 +,CG9135 + chr2L 6050571 intergenic CG12393 +,CG9135 + chr2L_6_6050001 chr2L_6050001 RAL-812 111 chr2L 6107519 6107528 chr2L 6107594 6107614 4 79 8.5 4.0 6.2 0.6 95 chr2L 6107519 intron stai + chr2L 6107566 intron stai + chr2L 6107614 intron stai + chr2L_4_6105001 chr2L_6105001 RAL-812 112 chr2L 6363151 6363181 chr2L 6366073 6366100 Burdock 8 2921 0.5 3.5 2.0 2.7 2949 chr2L 6363151 intergenic not near genes chr2L 6364626 intergenic not near genes chr2L 6366100 intergenic not near genes chr2L_8_6360001 chr2L_6360001 RAL-812 113 chr2L 6426854 6426885 chr2L 6445114 6445145 roo 13 18260 4.5 3.0 3.8 2.7 18291 chr2L 6426854 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445145 exon CG9527 - chr2L_13_6435001 chr2L_6435001 RAL-812 114 chr2L 6544376 6544391 chr2L 6544468 6544483 6 92 3.5 2.0 2.8 1.6 107 chr2L 6544376 intron eya - chr2L 6544430 intron eya - chr2L 6544483 intron eya - chr2L_6_6540001 chr2L_6540001 RAL-812 115 chr2L 6798110 6798135 chr2L 6798200 6798225 4 90 13.5 17.0 15.2 0.2 115 chr2L 6798110 intron nrv2 - chr2L 6798168 intron nrv2 - chr2L 6798225 intron nrv2 - chr2L_4_6795001 chr2L_6795001 RAL-812 116 chr2L 6799542 6799571 chr2L 6799630 6799659 5 88 4.0 3.5 3.8 1.0 117 chr2L 6799542 5` UTR CR43610 + chr2L 6799600 5` UTR CR43610 + chr2L 6799659 intergenic CR43610 +,CG17376 - chr2L_5_6795001 chr2L_6795001 RAL-812 117 chr2L 6876780 6876809 chr2L 6882971 6883000 diver 6 6190 5.0 5.0 5.0 1.0 6220 chr2L 6876780 intron Nlg2 + chr2L 6879890 intron Nlg2 + chr2L 6883000 intron Nlg2 + chr2L_6_6875001 chr2L_6875001 RAL-812 118 chr2L 6883747 6883774 chr2L 6883833 6883859 7 86 6.5 8.5 7.5 0.8 112 chr2L 6883747 intron Nlg2 + chr2L 6883803 intron Nlg2 + chr2L 6883859 intron Nlg2 + chr2L_7_6880001 chr2L_6880001 RAL-812 119 chr2L 6969280 6969305 chr2L 6969359 6969384 9 80 13.5 15.5 14.5 0.6 104 chr2L 6969280 3` UTR snRNP-U1-70K - chr2L 6969332 3` UTR snRNP-U1-70K - chr2L 6969384 3` UTR snRNP-U1-70K - chr2L_9_6965001 chr2L_6965001 RAL-812 120 chr2L 7080798 7080809 chr2L 7080885 7080898 4 88 15.5 12.0 13.8 0.3 100 chr2L 7080798 intron Pvf2 - chr2L 7080848 intron Pvf2 - chr2L 7080898 intron Pvf2 - chr2L_4_7080001 chr2L_7080001 RAL-812 121 chr2L 7111760 7111781 chr2L 7111846 7111867 4 86 1.0 0.0 0.5 2.7 107 chr2L 7111760 intron Pvf3 - chr2L 7111814 intron Pvf3 - chr2L 7111867 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-812 122 chr2L 7165793 7165806 chr2L 7165869 7165887 4 80 2.5 2.0 2.2 1.2 94 chr2L 7165793 intergenic not near genes chr2L 7165840 intergenic not near genes chr2L 7165887 intergenic not near genes chr2L_4_7165001 chr2L_7165001 RAL-812 123 chr2L 7249626 7249652 chr2L 7249705 7249726 8 78 5.5 5.5 5.5 1.2 100 chr2L 7249626 intergenic Ndae1 - chr2L 7249676 intergenic Ndae1 - chr2L 7249726 intergenic Ndae1 - chr2L_8_7245001 chr2L_7245001 RAL-812 124 chr2L 7295998 7296021 chr2L 7296136 7296161 5 138 2.0 2.5 2.2 1.6 163 chr2L 7295998 intergenic not near genes chr2L 7296080 intergenic not near genes chr2L 7296161 intergenic not near genes chr2L_5_7295001 chr2L_7295001 RAL-812 125 chr2L 7343325 7343354 chr2L 7350440 7350469 roo 7 7116 3.5 3.5 3.5 1.6 7144 chr2L 7343325 intron Wnt6 + chr2L 7346897 intron Wnt6 + chr2L 7350469 intron Wnt6 + chr2L_7_7345001 chr2L_7345001 RAL-812 126 chr2L 7399305 7399333 chr2L 7399678 7399706 8 372 8.5 18.0 13.2 0.6 401 chr2L 7399305 intergenic not near genes chr2L 7399506 intergenic not near genes chr2L 7399706 intergenic not near genes chr2L_8_7395001 chr2L_7395001 RAL-812 127 chr2L 7572469 7572474 chr2L 7572619 7572624 4 150 2.5 1.5 2.0 1.3 155 chr2L 7572469 intron RapGAP1 - chr2L 7572546 intron RapGAP1 - chr2L 7572624 intron RapGAP1 - chr2L_4_7570001 chr2L_7570001 RAL-812 128 chr2L 7653045 7653067 chr2L 7653139 7653161 4 94 11.5 7.5 9.5 0.4 116 chr2L 7653045 intron Slob - chr2L 7653103 intron Slob - chr2L 7653161 intron Slob - chr2L_4_7650001 chr2L_7650001 RAL-812 129 chr2L 7664969 7664987 chr2L 7665052 7665072 6 84 12.5 12.5 12.5 0.4 103 chr2L 7664969 intron Slob - chr2L 7665020 intron Slob - chr2L 7665072 intron Slob - chr2L_6_7665001 chr2L_7665001 RAL-812 130 chr2L 7867566 7867598 chr2L 7867660 7867692 6 94 4.5 3.5 4.0 1.2 126 chr2L 7867566 intron Proc - chr2L 7867629 intron Proc - chr2L 7867692 intron Proc - chr2L_6_7865001 chr2L_7865001 RAL-812 131 chr2L 7922741 7922773 chr2L 7922822 7922841 14 79 3.5 3.5 3.5 3.1 100 chr2L 7922741 intron Snoo - chr2L 7922791 intron Snoo - chr2L 7922841 intron Snoo - chr2L_14_7920001 chr2L_7920001 RAL-812 132 chr2L 7959044 7959065 chr2L 7960454 7960476 pogo 11 1411 3.5 0.0 1.8 3.9 1432 chr2L 7959044 intron Snoo - chr2L 7959760 intron Snoo - chr2L 7960476 intron Snoo - chr2L_11_7955001 chr2L_7955001 RAL-812 133 chr2L 7977090 7977112 chr2L 7984066 7984088 297 4 6975 5.0 3.5 4.2 0.8 6998 chr2L 7977090 intron Snoo - chr2L 7980589 intron Snoo - chr2L 7984088 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-812 134 chr2L 8013619 8013633 chr2L 8018823 8018836 copia 4 5204 5.0 0.0 2.5 1.1 5217 chr2L 8013619 intron Tg + chr2L 8016228 intron Tg + chr2L 8018836 intron Tg + chr2L_4_8015001 chr2L_8015001 RAL-812 135 chr2L 8044106 8044130 chr2L 8044184 8044209 10 78 4.0 2.5 3.2 2.4 103 chr2L 8044106 intron CG7466 + chr2L 8044158 intron CG7466 + chr2L 8044209 intron CG7466 + chr2L_10_8040001 chr2L_8040001 RAL-812 136 chr2L 8288683 8288705 chr2L 8288779 8288801 7 96 4.0 8.5 6.2 1.0 118 chr2L 8288683 intron Btk29A - chr2L 8288742 intron Btk29A - chr2L 8288801 intron Btk29A - chr2L_7_8285001 chr2L_8285001 RAL-812 137 chr2L 8452423 8452453 chr2L 8461593 8461624 roo 8 9171 0.5 4.0 2.2 2.5 9201 chr2L 8452423 intron fu12 - chr2L 8457024 intron fu12 - chr2L 8461624 intron fu12 - chr2L_8_8455001 chr2L_8455001 RAL-812 138 chr2L 8502662 8502690 chr2L 8502746 8502753 11 82 10.5 10.5 10.5 1.0 91 chr2L 8502662 intron Dh31 - chr2L 8502708 intron Dh31 - chr2L 8502753 intron Dh31 - chr2L_11_8500001 chr2L_8500001 RAL-812 139 chr2L 8554359 8554373 chr2L 8554455 8554469 5 96 3.0 2.0 2.5 1.4 110 chr2L 8554359 intron Sema-1a + chr2L 8554414 intron Sema-1a + chr2L 8554469 intron Sema-1a + chr2L_5_8550001 chr2L_8550001 RAL-812 140 chr2L 8588915 8588926 chr2L 8589006 8589017 5 91 4.5 7.5 6.0 0.7 102 chr2L 8588915 intron Sema-1a + chr2L 8588966 intron Sema-1a + chr2L 8589017 intron Sema-1a + chr2L_5_8585001 chr2L_8585001 RAL-812 141 chr2L 8660854 8660868 chr2L 8661007 8661020 4 152 14.5 0.5 7.5 0.5 166 chr2L 8660854 intron Sema-1a + chr2L 8660937 intron Sema-1a + chr2L 8661020 intron Sema-1a + chr2L_4_8660001 chr2L_8660001 RAL-812 142 chr2L 8723116 8723142 chr2L 8731493 8731519 Tirant 8 8377 1.5 4.5 3.0 2.0 8403 chr2L 8723116 intron raw - chr2L 8727318 intron raw - chr2L 8731519 intron raw - chr2L_8_8725001 chr2L_8725001 RAL-812 143 chr2L 8799820 8799831 chr2L 8799926 8799941 4 112 7.5 5.0 6.2 0.6 121 chr2L 8799820 intergenic not near genes chr2L 8799880 intergenic not near genes chr2L 8799941 intergenic not near genes chr2L_4_8795001 chr2L_8795001 RAL-812 144 chr2L 8814598 8814607 chr2L 8814750 8814759 4 152 2.0 9.5 5.8 0.6 161 chr2L 8814598 intergenic not near genes chr2L 8814678 intergenic not near genes chr2L 8814759 intergenic not near genes chr2L_4_8810001 chr2L_8810001 RAL-812 145 chr2L 8910728 8910744 chr2L 8910818 8910835 9 90 6.5 12.5 9.5 0.9 107 chr2L 8910728 intron CG34398 + chr2L 8910782 intron CG34398 + chr2L 8910835 intron CG34398 + chr2L_9_8910001 chr2L_8910001 RAL-812 146 chr2L 9000278 9000300 chr2L 9007787 9007810 roo 7 7510 7.5 2.0 4.8 1.2 7532 chr2L 9000278 intergenic Try29F + chr2L 9004044 intergenic not near genes chr2L 9007810 intergenic not near genes chr2L_7_9000001 chr2L_9000001 RAL-812 147 chr2L 9025541 9025833 chr2L 9025618 9025917 8 83 10.0 4.5 7.2 1.0 376 chr2L 9025541 intron CG9582 - chr2L 9025729 intron,3` UTR CG9582 -,CR44352 - chr2L 9025917 intron,3` UTR CG9582 -,CR44352 - chr2L_8_9025001 chr2L_9025001 RAL-812 148 chr2L 9025840 9025850 chr2L 9025922 9025925 4 81 10.5 6.0 8.2 0.4 85 chr2L 9025840 intron,3` UTR CG9582 -,CR44352 - chr2L 9025882 intron,3` UTR CG9582 -,CR44352 - chr2L 9025925 intron,3` UTR CG9582 -,CR44352 - chr2L_4_9025001 chr2L_9025001 RAL-812 149 chr2L 9040888 9040898 chr2L 9040964 9040974 4 76 5.0 9.0 7.0 0.5 86 chr2L 9040888 intergenic not near genes chr2L 9040931 intergenic not near genes chr2L 9040974 intergenic not near genes chr2L_4_9040001 chr2L_9040001 RAL-812 150 chr2L 9084336 9084340 chr2L 16217660 16217660 14 7133322 13.5 20.5 17.0 0.8 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_12650001 chr2L_12650001 RAL-812 151 chr2L 9217980 9217997 chr2L 9222764 9222784 Doc 4 4784 3.5 4.0 3.8 0.8 4804 chr2L 9217980 intron tai + chr2L 9220382 intron tai + chr2L 9222784 intron tai + chr2L_4_9220001 chr2L_9220001 RAL-812 152 chr2L 9251147 9251179 chr2L 9251244 9251273 9 96 2.0 4.0 3.0 2.2 126 chr2L 9251147 intergenic aust -,borr - chr2L 9251210 intergenic aust -,borr - chr2L 9251273 intergenic borr -,aust - chr2L_9_9250001 chr2L_9250001 RAL-812 153 chr2L 9287338 9287355 chr2L 9287435 9287452 5 97 4.5 7.0 5.8 0.7 114 chr2L 9287338 intron Ggamma30A + chr2L 9287395 intron Ggamma30A + chr2L 9287452 intron Ggamma30A + chr2L_5_9285001 chr2L_9285001 RAL-812 154 chr2L 9297377 9297404 chr2L 9297454 9297481 5 77 13.5 10.5 12.0 0.4 104 chr2L 9297377 3` UTR Ggamma30A + chr2L 9297429 3` UTR Ggamma30A + chr2L 9297481 3` UTR Ggamma30A + chr2L_5_9295001 chr2L_9295001 RAL-812 155 chr2L 9303372 9303535 chr2L 9303475 9303615 12 80 6.0 4.5 5.2 1.9 243 chr2L 9303372 intergenic not near genes chr2L 9303494 intergenic not near genes chr2L 9303615 intergenic not near genes chr2L_12_9300001 chr2L_9300001 RAL-812 156 chr2L 9383114 9383142 chr2L 9383331 9383357 7 216 11.0 13.0 12.0 0.5 243 chr2L 9383114 intron Shawl - chr2L 9383236 intron Shawl - chr2L 9383357 intron Shawl - chr2L_7_9380001 chr2L_9380001 RAL-812 157 chr2L 9385121 9385141 chr2L 9385211 9385231 5 90 14.0 13.5 13.8 0.3 110 chr2L 9385121 intron Shawl - chr2L 9385176 intron Shawl - chr2L 9385231 intron Shawl - chr2L_5_9385001 chr2L_9385001 RAL-812 158 chr2L 9393497 9393531 chr2L 9396464 9396498 jockey 9 2967 3.0 4.0 3.5 2.0 3001 chr2L 9393497 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396498 intron Shawl - chr2L_9_9390001 chr2L_9390001 RAL-812 159 chr2L 9441344 9441352 chr2L 9441448 9441456 4 104 5.5 5.5 5.5 0.6 112 chr2L 9441344 intron numb + chr2L 9441400 intron numb + chr2L 9441456 intron numb + chr2L_4_9440001 chr2L_9440001 RAL-812 160 chr2L 9456936 9456954 chr2L 9457017 9457035 10 79 5.5 11.5 8.5 1.1 99 chr2L 9456936 intron numb + chr2L 9456986 intron numb + chr2L 9457035 intron numb + chr2L_10_9455001 chr2L_9455001 RAL-812 161 chr2L 9526848 9526872 chr2L 9526940 9526957 6 91 11.0 9.0 10.0 0.5 109 chr2L 9526848 intron Oatp30B + chr2L 9526902 intron Oatp30B + chr2L 9526957 intron Oatp30B + chr2L_6_9525001 chr2L_9525001 RAL-812 162 chr2L 9607617 9607638 chr2L 9607702 9607723 4 85 5.0 2.5 3.8 0.8 106 chr2L 9607617 intergenic not near genes chr2L 9607670 intergenic not near genes chr2L 9607723 intergenic not near genes chr2L_4_9605001 chr2L_9605001 RAL-812 163 chr2L 9610013 9610116 chr2L 9610097 9610195 11 80 14.5 7.0 10.8 0.9 182 chr2L 9610013 intron gcm2 + chr2L 9610104 intron gcm2 + chr2L 9610195 intron gcm2 + chr2L_11_9610001 chr2L_9610001 RAL-812 164 chr2L 9633832 9633847 chr2L 9633959 9633974 4 126 10.5 7.5 9.0 0.4 142 chr2L 9633832 intergenic Apoltp + chr2L 9633903 intergenic Apoltp + chr2L 9633974 intergenic Apoltp + chr2L_4_9630001 chr2L_9630001 RAL-812 165 chr2L 9973725 9973759 chr2L 9980844 9980878 HMS-Beagle 18 7116 5.5 5.5 5.5 2.8 7153 chr2L 9973725 intergenic not near genes chr2L 9977302 intergenic not near genes chr2L 9980878 intergenic not near genes chr2L_18_9975001 chr2L_9975001 RAL-812 166 chr2L 10051736 10051753 chr2L 10051820 10051838 6 85 4.0 5.5 4.8 1.0 102 chr2L 10051736 5` UTR CR44874 + chr2L 10051787 5` UTR CR44874 + chr2L 10051838 5` UTR CR44874 + chr2L_6_10050001 chr2L_10050001 RAL-812 167 chr2L 10153216 10153237 chr2L 10153294 10153301 5 75 10.5 10.5 10.5 0.4 85 chr2L 10153216 intron,exon CG44153 -,CG4839 + chr2L 10153258 intron,intron CG44153 -,CG4839 + chr2L 10153301 intron,intron CG44153 -,CG4839 + chr2L_5_10150001 chr2L_10150001 RAL-812 168 chr2L 10156324 10156352 chr2L 10163793 10163821 blood 11 7468 3.0 3.5 3.2 2.6 7497 chr2L 10156324 intron,3` UTR CG44153 -,CG4839 + chr2L 10160072 intron CG44153 - chr2L 10163821 intron CG44153 - chr2L_11_10160001 chr2L_10160001 RAL-812 169 chr2L 10276206 10276225 chr2L 10276284 10276303 5 78 4.0 4.0 4.0 1.0 97 chr2L 10276206 intron Utx - chr2L 10276254 intron Utx - chr2L 10276303 intron Utx - chr2L_5_10275001 chr2L_10275001 RAL-812 170 chr2L 10479396 10479420 chr2L 10479478 10479502 4 81 6.5 8.0 7.2 0.5 106 chr2L 10479396 intron RluA-2 + chr2L 10479449 intron RluA-2 + chr2L 10479502 intron RluA-2 + chr2L_4_10475001 chr2L_10475001 RAL-812 171 chr2L 10499550 10499578 chr2L 10499649 10499677 8 99 5.0 5.0 5.0 1.3 127 chr2L 10499550 intron Myo31DF - chr2L 10499614 intron Myo31DF - chr2L 10499677 intron Myo31DF - chr2L_8_10495001 chr2L_10495001 RAL-812 172 chr2L 10572699 10572717 chr2L 10572780 10572798 5 81 11.0 8.5 9.8 0.5 99 chr2L 10572699 intron Trim9 + chr2L 10572748 intron Trim9 + chr2L 10572798 intron Trim9 + chr2L_5_10570001 chr2L_10570001 RAL-812 173 chr2L 10580796 10580813 chr2L 10580877 10580894 5 81 4.5 1.5 3.0 1.2 98 chr2L 10580796 intron Trim9 + chr2L 10580845 intron Trim9 + chr2L 10580894 intron Trim9 + chr2L_5_10580001 chr2L_10580001 RAL-812 174 chr2L 10620784 10620793 chr2L 10620886 10620886 5 100 4.5 8.0 6.2 0.7 102 chr2L 10620784 intron Trim9 + chr2L 10620835 intron Trim9 + chr2L 10620886 intron Trim9 + chr2L_5_10620001 chr2L_10620001 RAL-812 175 chr2L 10640641 10640663 chr2L 10640730 10640750 5 88 14.5 13.5 14.0 0.3 109 chr2L 10640641 exon CG31872 + chr2L 10640696 exon CG31872 + chr2L 10640750 exon CG31872 + chr2L_5_10640001 chr2L_10640001 RAL-812 176 chr2L 10813698 10813707 chr2L 10813845 10813858 4 150 8.5 8.5 8.5 0.4 160 chr2L 10813698 intron Nos - chr2L 10813778 intron Nos - chr2L 10813858 intron Nos - chr2L_4_10810001 chr2L_10810001 RAL-812 177 chr2L 10862837 10862873 chr2L 10864451 10864477 Rt1c 9 1606 5.5 4.0 4.8 1.6 1640 chr2L 10862837 3` UTR CR43807 - chr2L 10863657 intron CR43807 - chr2L 10864477 3` UTR CR43807 - chr2L_9_10860001 chr2L_10860001 RAL-812 178 chr2L 10891488 10891520 chr2L 10891602 10891634 6 111 1.0 4.0 2.5 1.7 146 chr2L 10891488 intergenic not near genes chr2L 10891561 intergenic not near genes chr2L 10891634 intergenic not near genes chr2L_6_10890001 chr2L_10890001 RAL-812 179 chr2L 10945095 10945107 chr2L 10945169 10945183 7 76 8.0 7.0 7.5 0.8 88 chr2L 10945095 intron dpr2 - chr2L 10945139 intron dpr2 - chr2L 10945183 intron dpr2 - chr2L_7_10945001 chr2L_10945001 RAL-812 180 chr2L 10946948 10946974 chr2L 10956163 10956189 roo 11 9214 2.5 5.5 4.0 2.2 9241 chr2L 10946948 intron dpr2 - chr2L 10951568 intron dpr2 - chr2L 10956189 intron dpr2 - chr2L_11_10950001 chr2L_10950001 RAL-812 181 chr2L 11228140 11228163 chr2L 11228314 11228335 10 174 10.5 10.5 10.5 0.9 195 chr2L 11228140 intron ab + chr2L 11228238 intron ab + chr2L 11228335 intron ab + chr2L_10_11225001 chr2L_11225001 RAL-812 182 chr2L 11255334 11255341 chr2L 11255420 11255429 5 88 10.0 10.5 10.2 0.4 95 chr2L 11255334 intron ab + chr2L 11255382 intron ab + chr2L 11255429 intron ab + chr2L_5_11255001 chr2L_11255001 RAL-812 183 chr2L 11292374 11292408 chr2L 11292456 11292490 4 82 2.0 2.5 2.2 1.2 116 chr2L 11292374 intergenic not near genes chr2L 11292432 intergenic not near genes chr2L 11292490 intergenic not near genes chr2L_4_11290001 chr2L_11290001 RAL-812 184 chr2L 11418656 11418688 chr2L 11418735 11418764 11 78 6.0 5.5 5.8 1.6 108 chr2L 11418656 intergenic not near genes chr2L 11418710 intergenic not near genes chr2L 11418764 intergenic not near genes chr2L_11_11415001 chr2L_11415001 RAL-812 185 chr2L 11450154 11450157 chr2L 11450221 11450239 4 76 4.0 7.5 5.8 0.6 85 chr2L 11450154 intergenic not near genes chr2L 11450196 intergenic not near genes chr2L 11450239 intergenic not near genes chr2L_4_11450001 chr2L_11450001 RAL-812 186 chr2L 11454675 11454706 chr2L 11454796 11454829 6 119 3.5 2.0 2.8 1.6 154 chr2L 11454675 intergenic not near genes chr2L 11454752 intergenic not near genes chr2L 11454829 intergenic not near genes chr2L_6_11450001 chr2L_11450001 RAL-812 187 chr2L 11563644 11563670 chr2L 11568848 11568874 copia 7 5204 2.0 2.5 2.2 2.2 5230 chr2L 11563644 intergenic not near genes chr2L 11566259 intergenic not near genes chr2L 11568874 intergenic not near genes chr2L_7_11565001 chr2L_11565001 RAL-812 188 chr2L 11598207 11598241 chr2L 11598348 11598381 5 138 3.5 3.5 3.5 1.1 174 chr2L 11598207 intron kek2 + chr2L 11598294 intron kek2 + chr2L 11598381 intron kek2 + chr2L_5_11595001 chr2L_11595001 RAL-812 189 chr2L 11612668 11612694 chr2L 11612756 11612782 6 88 6.0 8.0 7.0 0.8 114 chr2L 11612668 intron kek2 + chr2L 11612725 intron kek2 + chr2L 11612782 intron kek2 + chr2L_6_11610001 chr2L_11610001 RAL-812 190 chr2L 11684555 11684568 chr2L 11684628 11684645 5 76 8.5 8.5 8.5 0.5 90 chr2L 11684555 intergenic not near genes chr2L 11684600 intergenic not near genes chr2L 11684645 intergenic not near genes chr2L_5_11680001 chr2L_11680001 RAL-812 191 chr2L 11713506 11713531 chr2L 11720974 11720999 blood 10 7466 5.5 2.5 4.0 2.0 7493 chr2L 11713506 intergenic not near genes chr2L 11717252 intergenic not near genes chr2L 11720999 intergenic CR44143 + chr2L_10_11715001 chr2L_11715001 RAL-812 192 chr2L 11752871 11752890 chr2L 11753160 11753180 4 289 5.0 2.0 3.5 0.9 309 chr2L 11752871 intergenic CG42470 - chr2L 11753026 3` UTR CG42470 - chr2L 11753180 3` UTR CG42470 - chr2L_4_11750001 chr2L_11750001 RAL-812 193 chr2L 11781034 11781161 chr2L 11781118 11781239 4 81 0.0 0.0 0.0 4.0 205 chr2L 11781034 intergenic not near genes chr2L 11781136 intergenic not near genes chr2L 11781239 intergenic not near genes chr2L_4_11780001 chr2L_11780001 RAL-812 194 chr2L 11820432 11820465 chr2L 11820513 11820546 6 81 1.5 3.5 2.5 1.7 114 chr2L 11820432 intron Pde1c - chr2L 11820489 intron Pde1c - chr2L 11820546 intron Pde1c - chr2L_6_11820001 chr2L_11820001 RAL-812 195 chr2L 11870949 11870964 chr2L 11871027 11871041 5 77 5.0 3.5 4.2 1.0 92 chr2L 11870949 intron Pde1c - chr2L 11870995 intron Pde1c - chr2L 11871041 intron Pde1c - chr2L_5_11870001 chr2L_11870001 RAL-812 196 chr2L 11976094 11976110 chr2L 11976170 11976187 4 76 9.0 4.5 6.8 0.5 93 chr2L 11976094 intergenic not near genes chr2L 11976140 intergenic not near genes chr2L 11976187 intergenic not near genes chr2L_4_11975001 chr2L_11975001 RAL-812 197 chr2L 12067330 12067349 chr2L 12074382 12074401 297 4 7052 0.5 2.0 1.2 1.8 7071 chr2L 12067330 intergenic not near genes chr2L 12070866 intergenic not near genes chr2L 12074401 intergenic not near genes chr2L_4_12070001 chr2L_12070001 RAL-812 198 chr2L 12117441 12117463 chr2L 12117522 12117544 4 81 7.0 8.0 7.5 0.5 103 chr2L 12117441 intron CG17211 + chr2L 12117492 intron CG17211 + chr2L 12117544 intron CG17211 + chr2L_4_12115001 chr2L_12115001 RAL-812 199 chr2L 12131469 12131489 chr2L 12131565 12131585 5 96 12.0 8.0 10.0 0.5 116 chr2L 12131469 intron rho-6 - chr2L 12131527 intron rho-6 - chr2L 12131585 intron rho-6 - chr2L_5_12130001 chr2L_12130001 RAL-812 200 chr2L 12266116 12266134 chr2L 12266196 12266215 6 82 3.0 5.5 4.2 1.2 99 chr2L 12266116 intron aret + chr2L 12266166 intron aret + chr2L 12266215 intron aret + chr2L_6_12265001 chr2L_12265001 RAL-812 201 chr2L 12272166 12272192 chr2L 12272242 12272268 4 76 2.0 1.5 1.8 1.4 102 chr2L 12272166 intron aret + chr2L 12272217 intron aret + chr2L 12272268 intron aret + chr2L_4_12270001 chr2L_12270001 RAL-812 202 chr2L 12297240 12297274 chr2L 12297775 12297809 7 531 5.5 5.0 5.2 1.1 569 chr2L 12297240 intron aret + chr2L 12297524 intron aret + chr2L 12297809 intron aret + chr2L_7_12295001 chr2L_12295001 RAL-812 203 chr2L 12364674 12364707 chr2L 12364793 12364826 6 119 13.0 8.5 10.8 0.5 152 chr2L 12364674 intron bru-2 + chr2L 12364750 intron bru-2 + chr2L 12364826 intron bru-2 + chr2L_6_12360001 chr2L_12360001 RAL-812 204 chr2L 12434017 12434038 chr2L 12434087 12434114 4 74 8.5 5.0 6.8 0.5 97 chr2L 12434017 5` UTR SC35 - chr2L 12434066 intergenic SC35 -,Elf + chr2L 12434114 intergenic SC35 -,Elf + chr2L_4_12430001 chr2L_12430001 RAL-812 205 chr2L 12487885 12487916 chr2L 12487965 12487990 12 85 5.0 4.5 4.8 2.1 105 chr2L 12487885 intron bun - chr2L 12487938 intron bun - chr2L 12487990 intron bun - chr2L_12_12485001 chr2L_12485001 RAL-812 206 chr2L 12499780 12499806 chr2L 12499982 12500008 7 200 1.0 6.5 3.8 1.5 228 chr2L 12499780 intron bun - chr2L 12499894 intron bun - chr2L 12500008 intron bun - chr2L_7_12495001 chr2L_12495001 RAL-812 207 chr2L 12529235 12529263 chr2L 12529387 12529415 6 152 2.0 2.5 2.2 1.9 180 chr2L 12529235 intron bun - chr2L 12529325 intron bun - chr2L 12529415 intron bun - chr2L_6_12525001 chr2L_12525001 RAL-812 208 chr2L 12558329 12558352 chr2L 12565458 12565479 HMS-Beagle 4 7128 0.0 3.0 1.5 1.6 7150 chr2L 12558329 intergenic not near genes chr2L 12561904 intergenic not near genes chr2L 12565479 intergenic not near genes chr2L_4_12560001 chr2L_12560001 RAL-812 209 chr2L 12570354 12570642 chr2L 12570435 12570725 6 82 4.0 0.0 2.0 2.0 371 chr2L 12570354 intergenic CR44598 - chr2L 12570540 intergenic CR44598 - chr2L 12570725 3` UTR CR44598 - chr2L_6_12570001 chr2L_12570001 RAL-812 210 chr2L 12693841 12693871 chr2L 12693918 12693948 9 77 14.5 14.5 14.5 0.6 107 chr2L 12693841 exon CG6153 + chr2L 12693894 3` UTR,3` UTR CG6153 +,CG5780 - chr2L 12693948 3` UTR CG5780 - chr2L_9_12690001 chr2L_12690001 RAL-812 211 chr2L 12731056 12731086 chr2L 12735823 12735853 F-element 9 4767 1.5 2.0 1.8 3.2 4797 chr2L 12731056 intron MRP + chr2L 12733454 intron MRP + chr2L 12735853 intron MRP + chr2L_9_12730001 chr2L_12730001 RAL-812 212 chr2L 12739175 12739201 chr2L 12743952 12743982 Doc 11 4779 2.5 2.5 2.5 3.1 4807 chr2L 12739175 exon MRP + chr2L 12741578 intron MRP + chr2L 12743982 exon MRP + chr2L_11_12740001 chr2L_12740001 RAL-812 213 chr2L 12751312 12751338 chr2L 12751394 12751421 6 83 6.5 10.5 8.5 0.6 109 chr2L 12751312 intergenic not near genes chr2L 12751366 intergenic not near genes chr2L 12751421 intergenic not near genes chr2L_6_12750001 chr2L_12750001 RAL-812 214 chr2L 12753974 12754000 chr2L 12754078 12754103 12 103 3.0 5.0 4.0 2.4 129 chr2L 12753974 intergenic not near genes chr2L 12754038 intergenic not near genes chr2L 12754103 intergenic not near genes chr2L_12_12750001 chr2L_12750001 RAL-812 215 chr2L 12861697 12861728 chr2L 12863164 12863195 hobo 12 1465 3.0 3.5 3.2 2.9 1498 chr2L 12861697 intergenic not near genes chr2L 12862446 intergenic not near genes chr2L 12863195 intergenic not near genes chr2L_12_12860001 chr2L_12860001 RAL-812 216 chr2L 12894022 12894038 chr2L 12895489 12895491 hobo 5 1464 7.0 4.0 5.5 0.8 1469 chr2L 12894022 intergenic not near genes chr2L 12894756 intergenic not near genes chr2L 12895491 intergenic not near genes chr2L_5_12890001 chr2L_12890001 RAL-812 217 chr2L 12905476 12905492 chr2L 12905560 12905576 4 84 2.0 0.0 1.0 2.0 100 chr2L 12905476 intergenic not near genes chr2L 12905526 intergenic not near genes chr2L 12905576 intergenic not near genes chr2L_4_12905001 chr2L_12905001 RAL-812 218 chr2L 12933849 12933882 chr2L 12941316 12941341 blood 12 7466 4.5 1.0 2.8 3.2 7492 chr2L 12933849 intergenic not near genes chr2L 12937595 intergenic not near genes chr2L 12941341 intergenic not near genes chr2L_12_12935001 chr2L_12935001 RAL-812 219 chr2L 13147745 13147771 chr2L 13147821 13147847 5 71 16.0 13.5 14.8 0.3 102 chr2L 13147745 intergenic not near genes chr2L 13147796 intergenic not near genes chr2L 13147847 intergenic not near genes chr2L_5_13145001 chr2L_13145001 RAL-812 220 chr2L 13245401 13245411 chr2L 13245493 13245504 5 93 8.5 14.5 11.5 0.4 103 chr2L 13245401 intergenic snRNA:U5:34A + chr2L 13245452 intergenic snRNA:U5:34A + chr2L 13245504 intergenic not near genes chr2L_5_13245001 chr2L_13245001 RAL-812 221 chr2L 13266379 13266404 chr2L 13266466 13266492 4 88 18.0 16.0 17.0 0.2 113 chr2L 13266379 intron CG44085 + chr2L 13266436 intron CG44085 + chr2L 13266492 intron CG44085 + chr2L_4_13265001 chr2L_13265001 RAL-812 222 chr2L 13351826 13351850 chr2L 13351912 13351936 10 86 5.5 11.0 8.2 1.1 110 chr2L 13351826 exon CG9395 - chr2L 13351881 intron CG9395 - chr2L 13351936 exon CG9395 - chr2L_10_13350001 chr2L_13350001 RAL-812 223 chr2L 13405653 13405679 chr2L 13410450 13410476 Doc 12 4797 2.0 6.0 4.0 2.4 4823 chr2L 13405653 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410476 intron CG7110 + chr2L_12_13405001 chr2L_13405001 RAL-812 224 chr2L 13441761 13441782 chr2L 13441856 13441879 6 96 5.0 3.0 4.0 1.2 118 chr2L 13441761 intron,3` UTR CG42784 +,CR45683 - chr2L 13441820 intron,3` UTR CG42784 +,CR45683 - chr2L 13441879 intron,3` UTR CG42784 +,CR45683 - chr2L_6_13440001 chr2L_13440001 RAL-812 225 chr2L 13449462 13449491 chr2L 13456898 13456927 Quasimodo 5 7436 2.5 5.0 3.8 1.0 7465 chr2L 13449462 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453194 intron CG42784 + chr2L 13456927 intron CG42784 + chr2L_5_13450001 chr2L_13450001 RAL-812 226 chr2L 13481457 13481471 chr2L 13482064 13482078 jockey 7 607 4.0 9.0 6.5 0.9 621 chr2L 13481457 intron CG42784 + chr2L 13481768 intron CG42784 + chr2L 13482078 intron CG42784 + chr2L_7_13480001 chr2L_13480001 RAL-812 227 chr2L 13680237 13680264 chr2L 13680374 13680401 8 136 6.0 7.5 6.8 1.0 164 chr2L 13680237 intron CG31814 - chr2L 13680319 intron CG31814 - chr2L 13680401 intron CG31814 - chr2L_8_13680001 chr2L_13680001 RAL-812 228 chr2L 13699561 13699586 chr2L 13699635 13699659 6 75 8.5 8.5 8.5 0.6 98 chr2L 13699561 intron CG31814 - chr2L 13699610 intron CG31814 - chr2L 13699659 intron CG31814 - chr2L_6_13695001 chr2L_13695001 RAL-812 229 chr2L 13751164 13751190 chr2L 13751297 13751323 8 132 10.0 7.5 8.8 0.8 159 chr2L 13751164 intron,intron CR44846 +,TM9SF4 + chr2L 13751244 intron,intron CR44846 +,TM9SF4 + chr2L 13751323 intron,intron CR44846 +,TM9SF4 + chr2L_8_13750001 chr2L_13750001 RAL-812 230 chr2L 13761807 13761835 chr2L 13762916 13762945 Doc 9 1109 3.0 3.5 3.2 2.1 1138 chr2L 13761807 intron TM9SF4 + chr2L 13762376 intron TM9SF4 + chr2L 13762945 intron TM9SF4 + chr2L_9_13760001 chr2L_13760001 RAL-812 231 chr2L 13836805 13836824 chr2L 13837000 13837020 5 196 2.5 5.5 4.0 1.0 215 chr2L 13836805 intron CenG1A + chr2L 13836912 intron CenG1A + chr2L 13837020 intron CenG1A + chr2L_5_13835001 chr2L_13835001 RAL-812 232 chr2L 13853082 13853115 chr2L 13862232 13862265 roo 4 9150 5.0 2.0 3.5 0.9 9183 chr2L 13853082 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862265 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-812 233 chr2L 13910085 13910109 chr2L 13910251 13910267 4 164 16.0 10.0 13.0 0.3 182 chr2L 13910085 exon Ance-2 + chr2L 13910176 exon Ance-2 + chr2L 13910267 exon Ance-2 + chr2L_4_13910001 chr2L_13910001 RAL-812 234 chr2L 13949701 13949734 chr2L 13949852 13949883 5 150 9.5 11.0 10.2 0.4 182 chr2L 13949701 intron Ance-3 + chr2L 13949792 intron Ance-3 + chr2L 13949883 intron Ance-3 + chr2L_5_13945001 chr2L_13945001 RAL-812 235 chr2L 14067620 14067645 chr2L 14067700 14067721 4 79 9.0 4.5 6.8 0.5 101 chr2L 14067620 intron nAChRalpha5 + chr2L 14067670 intron nAChRalpha5 + chr2L 14067721 intron nAChRalpha5 + chr2L_4_14065001 chr2L_14065001 RAL-812 236 chr2L 14118664 14118689 chr2L 14118763 14118788 6 99 2.0 2.5 2.2 1.9 124 chr2L 14118664 intergenic not near genes chr2L 14118726 intergenic not near genes chr2L 14118788 intergenic not near genes chr2L_6_14115001 chr2L_14115001 RAL-812 237 chr2L 14512670 14512697 chr2L 14512794 14512822 7 124 4.0 7.5 5.8 1.0 152 chr2L 14512670 intergenic not near genes chr2L 14512746 intergenic not near genes chr2L 14512822 intergenic not near genes chr2L_7_14510001 chr2L_14510001 RAL-812 238 chr2L 14564711 14564733 chr2L 14564795 14564817 6 84 6.0 4.0 5.0 1.0 106 chr2L 14564711 intergenic not near genes chr2L 14564764 intergenic not near genes chr2L 14564817 intergenic not near genes chr2L_6_14560001 chr2L_14560001 RAL-812 239 chr2L 14694268 14694278 chr2L 14694392 14694402 4 124 3.0 3.0 3.0 1.0 134 chr2L 14694268 intergenic not near genes chr2L 14694335 intergenic not near genes chr2L 14694402 intergenic not near genes chr2L_4_14690001 chr2L_14690001 RAL-812 240 chr2L 14707207 14707240 chr2L 14707326 14707358 17 118 3.0 2.0 2.5 4.9 151 chr2L 14707207 intergenic not near genes chr2L 14707282 intergenic not near genes chr2L 14707358 intergenic not near genes chr2L_17_14705001 chr2L_14705001 RAL-812 241 chr2L 14778808 14778838 chr2L 14779095 14779125 5 287 2.0 4.0 3.0 1.2 317 chr2L 14778808 intergenic not near genes chr2L 14778966 intergenic not near genes chr2L 14779125 intergenic not near genes chr2L_5_14775001 chr2L_14775001 RAL-812 242 chr2L 14803879 14803913 chr2L 14809082 14809116 copia 13 5199 2.0 6.0 4.0 2.6 5237 chr2L 14803879 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809116 intergenic not near genes chr2L_13_14805001 chr2L_14805001 RAL-812 243 chr2L 14840978 14841010 chr2L 14841065 14841095 7 87 0.5 3.0 1.8 2.5 117 chr2L 14840978 3` UTR CR43805 - chr2L 14841036 3` UTR CR43805 - chr2L 14841095 3` UTR CR43805 - chr2L_7_14840001 chr2L_14840001 RAL-812 244 chr2L 14889957 14889976 chr2L 14890380 14890401 jockey 11 424 4.0 4.5 4.2 2.1 444 chr2L 14889957 intergenic not near genes chr2L 14890179 intergenic not near genes chr2L 14890401 intergenic not near genes chr2L_11_14890001 chr2L_14890001 RAL-812 245 chr2L 14933671 14933685 chr2L 14933742 14933761 6 75 9.0 11.0 10.0 0.5 90 chr2L 14933671 intron CG42313 - chr2L 14933716 intron CG42313 - chr2L 14933761 intron CG42313 - chr2L_6_14930001 chr2L_14930001 RAL-812 246 chr2L 14984386 14984405 chr2L 14991988 14992007 opus 4 7602 3.5 1.5 2.5 1.1 7621 chr2L 14984386 intron mol - chr2L 14988196 intron mol - chr2L 14992007 intron mol - chr2L_4_14985001 chr2L_14985001 RAL-812 247 chr2L 15003545 15003571 chr2L 15003628 15003653 4 83 6.0 8.5 7.2 0.5 108 chr2L 15003545 intergenic not near genes chr2L 15003599 intergenic not near genes chr2L 15003653 intergenic not near genes chr2L_4_15000001 chr2L_15000001 RAL-812 248 chr2L 15021448 15021467 chr2L 15021523 15021541 5 75 7.0 4.0 5.5 0.8 93 chr2L 15021448 intron GABA-B-R1 + chr2L 15021494 intron GABA-B-R1 + chr2L 15021541 intron GABA-B-R1 + chr2L_5_15020001 chr2L_15020001 RAL-812 249 chr2L 15105044 15105066 chr2L 15105128 15105142 4 82 8.5 5.0 6.8 0.5 98 chr2L 15105044 intergenic not near genes chr2L 15105093 intergenic not near genes chr2L 15105142 intergenic not near genes chr2L_4_15105001 chr2L_15105001 RAL-812 250 chr2L 15135265 15135287 chr2L 15135353 15135378 5 90 14.0 12.5 13.2 0.4 113 chr2L 15135265 intergenic not near genes chr2L 15135322 intergenic not near genes chr2L 15135378 intergenic not near genes chr2L_5_15135001 chr2L_15135001 RAL-812 251 chr2L 15343537 15343563 chr2L 15343622 15343648 4 85 6.5 5.0 5.8 0.6 111 chr2L 15343537 intergenic not near genes chr2L 15343592 intergenic not near genes chr2L 15343648 intergenic not near genes chr2L_4_15340001 chr2L_15340001 RAL-812 252 chr2L 15413063 15413092 chr2L 15413139 15413168 6 76 11.0 12.0 11.5 0.5 105 chr2L 15413063 intergenic not near genes chr2L 15413116 intergenic not near genes chr2L 15413168 intergenic not near genes chr2L_6_15410001 chr2L_15410001 RAL-812 253 chr2L 15446050 15446067 chr2L 15453519 15453536 blood 4 7469 5.5 0.5 3.0 1.0 7486 chr2L 15446050 intergenic not near genes chr2L 15449793 intergenic not near genes chr2L 15453536 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-812 254 chr2L 15586413 15586436 chr2L 15593465 15593488 297 6 7052 2.5 1.0 1.8 2.1 7075 chr2L 15586413 intergenic not near genes chr2L 15589950 intergenic not near genes chr2L 15593488 intergenic not near genes chr2L_6_15585001 chr2L_15585001 RAL-812 255 chr2L 15616058 15616079 chr2L 15617127 15617147 7 1069 6.5 4.5 5.5 1.1 1089 chr2L 15616058 exon CG15253 - chr2L 15616602 intergenic CG15253 -,CG11865 + chr2L 15617147 exon CG11865 + chr2L_7_15615001 chr2L_15615001 RAL-812 256 chr2L 15889275 15889296 chr2L 15889394 15889415 8 118 15.5 15.5 15.5 0.5 140 chr2L 15889275 exon Tep1 - chr2L 15889345 exon Tep1 - chr2L 15889415 exon Tep1 - chr2L_8_15885001 chr2L_15885001 RAL-812 257 chr2L 15998248 15998254 chr2L 15998326 15998339 4 83 9.5 4.0 6.8 0.5 91 chr2L 15998248 intergenic not near genes chr2L 15998294 intergenic not near genes chr2L 15998339 intergenic not near genes chr2L_4_15995001 chr2L_15995001 RAL-812 258 chr2L 16071771 16071771 chr2L 16217660 16217661 copia 12 145889 17.0 20.5 18.8 0.6 145890 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217661 intergenic not near genes chr2L_12_16140001 chr2L_16140001 RAL-812 259 chr2L 16119265 16119294 chr2L 16119349 16119378 10 84 3.0 5.5 4.2 1.9 113 chr2L 16119265 intergenic not near genes chr2L 16119322 intergenic not near genes chr2L 16119378 intergenic not near genes chr2L_10_16115001 chr2L_16115001 RAL-812 260 chr2L 16141166 16141195 chr2L 16146373 16146402 copia 9 5207 0.5 3.5 2.0 3.0 5236 chr2L 16141166 intergenic not near genes chr2L 16143784 intergenic not near genes chr2L 16146402 intergenic not near genes chr2L_9_16140001 chr2L_16140001 RAL-812 261 chr2L 9084337 9084340 chr2L 16217660 16217660 10 7133321 13.5 20.5 17.0 0.6 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_12650001 chr2L_12650001 RAL-812 262 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 17.0 20.5 18.8 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-812 263 chr2L 16243697 16243851 chr2L 16243780 16243946 4 89 2.0 2.5 2.2 1.2 249 chr2L 16243697 exon CG42818 + chr2L 16243822 exon CG42818 + chr2L 16243946 exon CG42818 + chr2L_4_16240001 chr2L_16240001 RAL-812 264 chr2L 16254894 16254919 chr2L 16255153 16255178 6 259 1.0 1.0 1.0 3.0 284 chr2L 16254894 intron PRL-1 - chr2L 16255036 intron PRL-1 - chr2L 16255178 intron PRL-1 - chr2L_6_16255001 chr2L_16255001 RAL-812 265 chr2L 16280255 16280286 chr2L 16281423 16281442 1360 12 1165 3.0 4.0 3.5 2.7 1187 chr2L 16280255 intron crp - chr2L 16280848 intron crp - chr2L 16281442 intron crp - chr2L_12_16280001 chr2L_16280001 RAL-812 266 chr2L 16480153 16480171 chr2L 16480548 16480578 6 399 4.5 8.0 6.2 0.8 425 chr2L 16480153 intron dac - chr2L 16480366 intron dac - chr2L 16480578 intron dac - chr2L_6_16480001 chr2L_16480001 RAL-812 267 chr2L 16694133 16694164 chr2L 16694219 16694230 5 82 9.5 11.0 10.2 0.4 97 chr2L 16694133 intron grp + chr2L 16694182 intron grp + chr2L 16694230 intron grp + chr2L_5_16690001 chr2L_16690001 RAL-812 268 chr2L 16958105 16958127 chr2L 16962893 16962915 Doc 6 4788 1.5 2.0 1.8 2.1 4810 chr2L 16958105 intergenic not near genes chr2L 16960510 intergenic not near genes chr2L 16962915 intergenic not near genes chr2L_6_16960001 chr2L_16960001 RAL-812 269 chr2L 17000122 17000154 chr2L 17000244 17000276 5 122 3.0 6.5 4.8 0.9 154 chr2L 17000122 intergenic not near genes chr2L 17000199 intergenic not near genes chr2L 17000276 intergenic not near genes chr2L_5_17000001 chr2L_17000001 RAL-812 270 chr2L 17003313 17003328 chr2L 17003399 17003414 4 86 3.5 4.5 4.0 0.8 101 chr2L 17003313 intergenic not near genes chr2L 17003364 intergenic not near genes chr2L 17003414 intergenic not near genes chr2L_4_17000001 chr2L_17000001 RAL-812 271 chr2L 17018309 17018333 chr2L 17018398 17018422 7 89 7.5 10.0 8.8 0.7 113 chr2L 17018309 intergenic CR45462 - chr2L 17018366 intergenic CR45462 - chr2L 17018422 intergenic CR45462 - chr2L_7_17015001 chr2L_17015001 RAL-812 272 chr2L 17066395 17066414 chr2L 17066474 17066493 4 79 8.0 8.5 8.2 0.4 98 chr2L 17066395 intergenic not near genes chr2L 17066444 intergenic not near genes chr2L 17066493 intergenic not near genes chr2L_4_17065001 chr2L_17065001 RAL-812 273 chr2L 17103012 17103039 chr2L 17103100 17103127 8 88 0.5 1.5 1.0 4.0 115 chr2L 17103012 intergenic not near genes chr2L 17103070 intergenic not near genes chr2L 17103127 intergenic not near genes chr2L_8_17100001 chr2L_17100001 RAL-812 274 chr2L 17167565 17167586 chr2L 17167804 17167827 pogo 5 241 0.5 1.5 1.0 2.5 262 chr2L 17167565 intron,intron CG34106 +,beat-IIIa + chr2L 17167696 intron,intron CG34106 +,beat-IIIa + chr2L 17167827 intron,intron CG34106 +,beat-IIIa + chr2L_5_17165001 chr2L_17165001 RAL-812 275 chr2L 17260895 17261129 chr2L 17260978 17261208 5 80 1.0 4.5 2.8 1.3 313 chr2L 17260895 intergenic beat-IIIc - chr2L 17261052 intergenic beat-IIIc - chr2L 17261208 intergenic beat-IIIc - chr2L_5_17260001 chr2L_17260001 RAL-812 276 chr2L 17273195 17273222 chr2L 17277977 17277993 F-element 12 4779 3.0 3.0 3.0 3.0 4798 chr2L 17273195 intergenic not near genes chr2L 17275594 intergenic not near genes chr2L 17277993 intergenic not near genes chr2L_12_17275001 chr2L_17275001 RAL-812 277 chr2L 17289237 17289253 chr2L 17289316 17289332 4 79 4.5 2.5 3.5 0.9 95 chr2L 17289237 intergenic not near genes chr2L 17289284 intergenic not near genes chr2L 17289332 intergenic not near genes chr2L_4_17285001 chr2L_17285001 RAL-812 278 chr2L 17290664 17290680 chr2L 17290738 17290763 6 80 6.0 5.5 5.8 0.9 99 chr2L 17290664 intergenic CG6380 - chr2L 17290714 intergenic CG6380 - chr2L 17290763 intergenic CG6380 - chr2L_6_17290001 chr2L_17290001 RAL-812 279 chr2L 17327914 17327925 chr2L 17327999 17328007 4 84 6.0 5.5 5.8 0.6 93 chr2L 17327914 intergenic not near genes chr2L 17327960 intergenic not near genes chr2L 17328007 intergenic not near genes chr2L_4_17325001 chr2L_17325001 RAL-812 280 chr2L 17444205 17444210 chr2L 17444317 17444322 4 112 13.0 4.5 8.8 0.4 117 chr2L 17444205 intron dl - chr2L 17444264 intron dl - chr2L 17444322 intron dl - chr2L_4_17440001 chr2L_17440001 RAL-812 281 chr2L 17543592 17543626 chr2L 17543684 17543717 11 93 2.0 1.5 1.8 3.9 125 chr2L 17543592 intergenic not near genes chr2L 17543654 intergenic not near genes chr2L 17543717 intergenic not near genes chr2L_11_17540001 chr2L_17540001 RAL-812 282 chr2L 17562040 17562057 chr2L 17562108 17562122 4 72 8.0 8.0 8.0 0.4 82 chr2L 17562040 intergenic not near genes chr2L 17562081 intergenic not near genes chr2L 17562122 intergenic not near genes chr2L_4_17560001 chr2L_17560001 RAL-812 283 chr2L 17679562 17679587 chr2L 17679665 17679685 5 102 4.5 5.5 5.0 0.8 123 chr2L 17679562 intron CadN - chr2L 17679624 intron CadN - chr2L 17679685 intron CadN - chr2L_5_17675001 chr2L_17675001 RAL-812 284 chr2L 17703652 17703687 chr2L 17703738 17703778 7 90 3.5 0.5 2.0 2.3 126 chr2L 17703652 intron CadN - chr2L 17703715 intron CadN - chr2L 17703778 intron CadN - chr2L_7_17700001 chr2L_17700001 RAL-812 285 chr2L 17747998 17748029 chr2L 17748075 17748104 4 74 9.0 7.0 8.0 0.4 106 chr2L 17747998 intron CadN - chr2L 17748051 intron CadN - chr2L 17748104 intron CadN - chr2L_4_17745001 chr2L_17745001 RAL-812 286 chr2L 17867429 17867454 chr2L 17867713 17867740 9 286 5.5 6.0 5.8 1.3 311 chr2L 17867429 intron CadN2 - chr2L 17867584 intron CadN2 - chr2L 17867740 intron CadN2 - chr2L_9_17865001 chr2L_17865001 RAL-812 287 chr2L 17880002 17880023 chr2L 17880089 17880094 10 85 4.0 3.0 3.5 2.2 92 chr2L 17880002 intergenic not near genes chr2L 17880048 intergenic not near genes chr2L 17880094 intergenic not near genes chr2L_10_17880001 chr2L_17880001 RAL-812 288 chr2L 17911971 17911986 chr2L 17914148 17914165 pogo 4 2175 6.0 6.5 6.2 0.6 2194 chr2L 17911971 intergenic not near genes chr2L 17913068 intergenic not near genes chr2L 17914165 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-812 289 chr2L 17941857 17941871 chr2L 17941938 17941955 5 83 7.0 8.5 7.8 0.6 98 chr2L 17941857 intergenic not near genes chr2L 17941906 intergenic not near genes chr2L 17941955 intergenic not near genes chr2L_5_17940001 chr2L_17940001 RAL-812 290 chr2L 18051884 18051908 chr2L 18061028 18061053 roo 7 9143 5.0 3.0 4.0 1.4 9169 chr2L 18051884 intron rdo + chr2L 18056468 intron rdo + chr2L 18061053 intron rdo + chr2L_7_18055001 chr2L_18055001 RAL-812 291 chr2L 18090676 18090701 chr2L 18090764 18090789 5 87 11.5 10.0 10.8 0.4 113 chr2L 18090676 intergenic CG15153 - chr2L 18090732 intergenic CG15153 - chr2L 18090789 3` UTR CG15153 - chr2L_5_18090001 chr2L_18090001 RAL-812 292 chr2L 18111243 18111264 chr2L 18111334 18111355 8 91 1.5 5.0 3.2 1.9 112 chr2L 18111243 intergenic not near genes chr2L 18111299 intergenic not near genes chr2L 18111355 intergenic not near genes chr2L_8_18110001 chr2L_18110001 RAL-812 293 chr2L 18145254 18145259 chr2L 18145333 18145338 4 79 11.0 12.5 11.8 0.3 84 chr2L 18145254 intron,5` UTR Socs36E -,CR44478 + chr2L 18145296 intron,5` UTR Socs36E -,CR44478 + chr2L 18145338 intron,5` UTR Socs36E -,CR44478 + chr2L_4_18145001 chr2L_18145001 RAL-812 294 chr2L 18218617 18218628 chr2L 18218705 18218715 4 87 4.5 5.5 5.0 0.7 98 chr2L 18218617 intron CG42750 - chr2L 18218666 intron CG42750 - chr2L 18218715 intron CG42750 - chr2L_4_18215001 chr2L_18215001 RAL-812 295 chr2L 18279719 18279753 chr2L 18279850 18279884 5 131 3.5 8.0 5.8 0.7 165 chr2L 18279719 intergenic CR44902 - chr2L 18279802 intergenic CR44902 - chr2L 18279884 intergenic CR44902 - chr2L_5_18275001 chr2L_18275001 RAL-812 296 chr2L 18408028 18408055 chr2L 18412808 18412839 Doc 5 4783 2.0 0.0 1.0 2.5 4811 chr2L 18408028 intergenic not near genes chr2L 18410434 intergenic not near genes chr2L 18412839 intergenic not near genes chr2L_5_18410001 chr2L_18410001 RAL-812 297 chr2L 18419794 18419805 chr2L 18419873 18419887 4 82 0.0 1.5 0.8 2.2 93 chr2L 18419794 intergenic not near genes chr2L 18419840 intergenic not near genes chr2L 18419887 intergenic not near genes chr2L_4_18415001 chr2L_18415001 RAL-812 298 chr2L 18552069 18552088 chr2L 18552163 18552183 5 95 2.0 3.5 2.8 1.3 114 chr2L 18552069 intron Pde11 - chr2L 18552126 intron Pde11 - chr2L 18552183 intron Pde11 - chr2L_5_18550001 chr2L_18550001 RAL-812 299 chr2L 18759602 18759611 chr2L 18759745 18759763 4 150 4.0 4.5 4.2 0.8 161 chr2L 18759602 intergenic not near genes chr2L 18759682 intergenic not near genes chr2L 18759763 intergenic not near genes chr2L_4_18755001 chr2L_18755001 RAL-812 300 chr2L 18766457 18766461 chr2L 18766577 18766582 5 121 8.0 3.0 5.5 0.8 125 chr2L 18766457 intron ham - chr2L 18766520 intron ham - chr2L 18766582 intron ham - chr2L_5_18765001 chr2L_18765001 RAL-812 301 chr2L 18812559 18812588 chr2L 18812822 18812851 5 263 4.0 15.5 9.8 0.5 292 chr2L 18812559 intergenic CG17325 +,CG42305 + chr2L 18812705 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812851 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-812 302 chr2L 18814900 18814912 chr2L 18814989 18815001 4 89 8.0 10.0 9.0 0.4 101 chr2L 18814900 intergenic not near genes chr2L 18814950 intergenic not near genes chr2L 18815001 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-812 303 chr2L 18898395 18898426 chr2L 18898477 18898508 13 81 3.5 1.5 2.5 3.7 113 chr2L 18898395 intergenic not near genes chr2L 18898452 intergenic not near genes chr2L 18898508 intergenic not near genes chr2L_13_18895001 chr2L_18895001 RAL-812 304 chr2L 19147377 19147403 chr2L 19154412 19154437 297 6 7035 4.0 5.0 4.5 1.1 7060 chr2L 19147377 intron brat + chr2L 19150907 intron brat + chr2L 19154437 intron brat + chr2L_6_19150001 chr2L_19150001 RAL-812 305 chr2L 19220107 19220135 chr2L 19220224 19220255 10 118 19.5 12.5 16.0 0.6 148 chr2L 19220107 intergenic not near genes chr2L 19220181 intergenic not near genes chr2L 19220255 intergenic not near genes chr2L_10_19220001 chr2L_19220001 RAL-812 306 chr2L 19305619 19305633 chr2L 19305723 19305739 5 106 4.5 6.0 5.2 0.8 120 chr2L 19305619 intergenic not near genes chr2L 19305679 intergenic not near genes chr2L 19305739 intergenic not near genes chr2L_5_19305001 chr2L_19305001 RAL-812 307 chr2L 19309623 19309646 chr2L 19309702 19309726 13 79 8.0 7.5 7.8 1.5 103 chr2L 19309623 intergenic not near genes chr2L 19309674 intergenic not near genes chr2L 19309726 intergenic not near genes chr2L_13_19305001 chr2L_19305001 RAL-812 308 chr2L 19340200 19340218 chr2L 19340277 19340295 4 73 7.5 5.5 6.5 0.5 95 chr2L 19340200 exon dnt - chr2L 19340248 exon dnt - chr2L 19340295 exon dnt - chr2L_4_19340001 chr2L_19340001 RAL-812 309 chr2L 19345015 19345047 chr2L 19357222 19357234 blood 11 12206 2.0 3.0 2.5 3.1 12219 chr2L 19345015 intron dnt - chr2L 19351124 intron dnt - chr2L 19357234 intron dnt - chr2L_11_19350001 chr2L_19350001 RAL-812 310 chr2L 19357545 19357566 chr2L 19357635 19357655 14 89 6.5 5.5 6.0 2.0 110 chr2L 19357545 intron dnt - chr2L 19357600 intron dnt - chr2L 19357655 intron dnt - chr2L_14_19355001 chr2L_19355001 RAL-812 311 chr2L 19378348 19378373 chr2L 19378431 19378456 5 83 7.5 10.5 9.0 0.5 108 chr2L 19378348 intergenic not near genes chr2L 19378402 intergenic not near genes chr2L 19378456 intergenic not near genes chr2L_5_19375001 chr2L_19375001 RAL-812 312 chr2L 19384004 19384022 chr2L 19384090 19384093 4 82 9.0 9.0 9.0 0.4 89 chr2L 19384004 exon fon - chr2L 19384048 exon fon - chr2L 19384093 exon fon - chr2L_4_19380001 chr2L_19380001 RAL-812 313 chr2L 19441065 19441089 chr2L 19441142 19441166 8 77 4.0 6.0 5.0 1.3 101 chr2L 19441065 intron CG10237 - chr2L 19441116 intron CG10237 - chr2L 19441166 5` UTR CG10237 - chr2L_8_19440001 chr2L_19440001 RAL-812 314 chr2L 19559181 19559412 chr2L 19559269 19559488 9 80 8.0 19.5 13.8 0.6 307 chr2L 19559181 exon Tep5 + chr2L 19559334 exon Tep5 + chr2L 19559488 exon Tep5 + chr2L_9_19555001 chr2L_19555001 RAL-812 315 chr2L 19560005 19560039 chr2L 19560258 19560291 11 252 3.0 4.5 3.8 2.3 286 chr2L 19560005 exon Tep5 + chr2L 19560148 exon Tep5 + chr2L 19560291 intron Tep5 + chr2L_11_19560001 chr2L_19560001 RAL-812 316 chr2L 19597280 19597305 chr2L 19597513 19597521 7 230 12.5 13.5 13.0 0.5 241 chr2L 19597280 intron Lar + chr2L 19597400 intron Lar + chr2L 19597521 intron Lar + chr2L_7_19595001 chr2L_19595001 RAL-812 317 chr2L 19620095 19620132 chr2L 19621079 19621121 jockey 13 988 2.5 3.5 3.0 3.2 1026 chr2L 19620095 intron Lar + chr2L 19620608 intron Lar + chr2L 19621121 intron Lar + chr2L_13_19620001 chr2L_19620001 RAL-812 318 chr2L 19638532 19638570 chr2L 19638620 19638658 13 88 9.0 11.0 10.0 1.2 126 chr2L 19638532 intron Lar + chr2L 19638595 intron Lar + chr2L 19638658 intron Lar + chr2L_13_19635001 chr2L_19635001 RAL-812 319 chr2L 19703535 19703565 chr2L 19712671 19712700 roo 18 9135 3.0 1.0 2.0 6.0 9165 chr2L 19703535 intron Lar + chr2L 19708118 intron Lar + chr2L 19712700 intron Lar + chr2L_18_19705001 chr2L_19705001 RAL-812 320 chr2L 19737360 19737388 chr2L 19740828 19740844 1360 9 3464 5.0 8.0 6.5 1.2 3484 chr2L 19737360 intergenic Nf-YB + chr2L 19739102 intergenic not near genes chr2L 19740844 intergenic not near genes chr2L_9_19735001 chr2L_19735001 RAL-812 321 chr2L 19754891 19754899 chr2L 19754974 19754983 4 84 7.5 14.5 11.0 0.3 92 chr2L 19754891 intron CG10631 - chr2L 19754937 intron CG10631 - chr2L 19754983 intron CG10631 - chr2L_4_19750001 chr2L_19750001 RAL-812 322 chr2L 19762813 19762840 chr2L 19763055 19763082 pogo 10 242 2.5 3.0 2.8 2.6 269 chr2L 19762813 5` UTR fbp - chr2L 19762948 intron fbp - chr2L 19763082 intron fbp - chr2L_10_19760001 chr2L_19760001 RAL-812 323 chr2L 19786353 19786366 chr2L 19786491 19786517 6 149 11.0 14.0 12.5 0.4 164 chr2L 19786353 intron CdGAPr - chr2L 19786435 intron CdGAPr - chr2L 19786517 intron CdGAPr - chr2L_6_19785001 chr2L_19785001 RAL-812 324 chr2L 19823269 19823296 chr2L 19823350 19823385 4 85 3.0 0.0 1.5 1.6 116 chr2L 19823269 intron sick + chr2L 19823327 intron sick + chr2L 19823385 intron sick + chr2L_4_19820001 chr2L_19820001 RAL-812 325 chr2L 19837280 19837309 chr2L 19837360 19837389 4 80 5.5 5.5 5.5 0.6 109 chr2L 19837280 intron sick + chr2L 19837334 intron sick + chr2L 19837389 intron sick + chr2L_4_19835001 chr2L_19835001 RAL-812 326 chr2L 19898963 19898991 chr2L 19899102 19899131 9 140 5.5 6.0 5.8 1.3 168 chr2L 19898963 intron sick + chr2L 19899047 intron sick + chr2L 19899131 intron sick + chr2L_9_19895001 chr2L_19895001 RAL-812 327 chr2L 19911309 19911320 chr2L 19911397 19911408 5 88 12.5 12.5 12.5 0.4 99 chr2L 19911309 intron,3` UTR sick +,CR43097 - chr2L 19911358 intron,3` UTR sick +,CR43097 - chr2L 19911408 intron,3` UTR sick +,CR43097 - chr2L_5_19910001 chr2L_19910001 RAL-812 328 chr2L 19977446 19977475 chr2L 19983173 19983203 5 5727 15.0 20.5 17.8 0.3 5757 chr2L 19977446 intron CG43861 - chr2L 19980324 intron CG43861 - chr2L 19983203 intron CG43861 - chr2L_5_19980001 chr2L_19980001 RAL-812 329 chr2L 19988807 19988832 chr2L 19988885 19988912 4 79 13.5 14.5 14.0 0.3 105 chr2L 19988807 intron CG43861 - chr2L 19988860 intron CG43861 - chr2L 19988912 intron CG43861 - chr2L_4_19985001 chr2L_19985001 RAL-812 330 chr2L 20005880 20005897 chr2L 20010956 20010973 flea 7 5076 1.0 4.5 2.8 1.8 5093 chr2L 20005880 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20010973 intron CG43861 - chr2L_7_20005001 chr2L_20005001 RAL-812 331 chr2L 20272121 20272143 chr2L 20282824 20282854 copia 6 10710 2.0 4.0 3.0 1.5 10733 chr2L 20272121 intergenic not near genes chr2L 20277488 intergenic not near genes chr2L 20282854 intergenic not near genes chr2L_6_20275001 chr2L_20275001 RAL-812 332 chr2L 20294305 20294333 chr2L 20294393 20294422 4 88 0.5 4.0 2.2 1.2 117 chr2L 20294305 intergenic CG12617 + chr2L 20294364 intergenic CG12617 + chr2L 20294422 intergenic CG12617 + chr2L_4_20290001 chr2L_20290001 RAL-812 333 chr2L 20310888 20310921 chr2L 20310967 20311000 4 78 2.0 4.0 3.0 1.0 112 chr2L 20310888 intergenic spir + chr2L 20310944 intergenic spir + chr2L 20311000 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-812 334 chr2L 20320042 20320047 chr2L 20320146 20320151 6 104 7.0 0.0 3.5 1.3 109 chr2L 20320042 intron spir + chr2L 20320096 intron spir + chr2L 20320151 intron spir + chr2L_6_20320001 chr2L_20320001 RAL-812 335 chr2L 20396804 20396829 chr2L 20396880 20396905 7 76 4.5 0.0 2.2 2.2 101 chr2L 20396804 intron CG10947 - chr2L 20396854 intron CG10947 - chr2L 20396905 intron CG10947 - chr2L_7_20395001 chr2L_20395001 RAL-812 336 chr2L 20546053 20546069 chr2L 20546117 20546146 7 74 1.5 1.0 1.2 3.2 93 chr2L 20546053 intergenic not near genes chr2L 20546100 intergenic not near genes chr2L 20546146 intergenic not near genes chr2L_7_20545001 chr2L_20545001 RAL-812 337 chr2L 20549135 20549156 chr2L 20549217 20549238 7 80 2.0 1.5 1.8 2.5 103 chr2L 20549135 intergenic not near genes chr2L 20549186 intergenic not near genes chr2L 20549238 intergenic not near genes chr2L_7_20545001 chr2L_20545001 RAL-812 338 chr2L 20553185 20553221 chr2L 20553260 20553296 11 75 2.0 0.5 1.2 5.0 111 chr2L 20553185 intergenic not near genes chr2L 20553240 intergenic not near genes chr2L 20553296 intergenic not near genes chr2L_11_20550001 chr2L_20550001 RAL-812 339 chr2L 20567335 20567370 chr2L 20567467 20567502 10 131 3.0 2.5 2.8 2.6 167 chr2L 20567335 intron CR45347 + chr2L 20567418 intron CR45347 + chr2L 20567502 intron CR45347 + chr2L_10_20565001 chr2L_20565001 RAL-812 340 chr2L 20568666 20568682 chr2L 20569056 20569071 X-element 4 390 2.0 3.5 2.8 1.1 405 chr2L 20568666 intron CR45347 + chr2L 20568868 intron CR45347 + chr2L 20569071 intron CR45347 + chr2L_4_20565001 chr2L_20565001 RAL-812 341 chr2L 20576236 20576249 chr2L 20583701 20583717 blood 5 7467 3.0 2.0 2.5 1.4 7481 chr2L 20576236 intergenic not near genes chr2L 20579976 intergenic not near genes chr2L 20583717 3` UTR CR44909 - chr2L_5_20575001 chr2L_20575001 RAL-812 342 chr2L 20601794 20601809 chr2L 20601872 20601887 6 78 4.5 0.5 2.5 1.7 93 chr2L 20601794 intron CR44909 - chr2L 20601840 intron CR44909 - chr2L 20601887 intron CR44909 - chr2L_6_20600001 chr2L_20600001 RAL-812 343 chr2L 20668687 20668721 chr2L 20668763 20668797 7 76 0.0 3.0 1.5 2.8 110 chr2L 20668687 intron CG31678 - chr2L 20668742 intron CG31678 - chr2L 20668797 intron CG31678 - chr2L_7_20665001 chr2L_20665001 RAL-812 344 chr2L 20695796 20695828 chr2L 20695884 20695916 7 88 1.0 2.0 1.5 2.8 120 chr2L 20695796 intron Hr38 - chr2L 20695856 intron Hr38 - chr2L 20695916 intron Hr38 - chr2L_7_20695001 chr2L_20695001 RAL-812 345 chr2L 20901471 20901488 chr2L 20902635 20902650 1360 4 1164 0.5 1.5 1.0 2.0 1179 chr2L 20901471 intron,intron CG43739 -,sky - chr2L 20902060 intron,intron CG43739 -,sky - chr2L 20902650 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-812 346 chr2L 20976642 20976680 chr2L 20981457 20981495 X-element 5 4814 1.5 2.0 1.8 1.8 4853 chr2L 20976642 intron CG42238 - chr2L 20979068 intron CG42238 - chr2L 20981495 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-812 347 chr2L 20984737 20984770 chr2L 20984829 20984862 6 91 4.0 2.0 3.0 1.5 125 chr2L 20984737 intron CG42238 - chr2L 20984800 intron CG42238 - chr2L 20984862 intron CG42238 - chr2L_6_20980001 chr2L_20980001 RAL-812 348 chr2L 21020271 21020310 chr2L 21023948 21023987 NOF 10 3676 2.0 2.0 2.0 3.3 3716 chr2L 21020271 intron CG42238 - chr2L 21022129 intron CG42238 - chr2L 21023987 intron CG42238 - chr2L_10_21020001 chr2L_21020001 RAL-812 349 chr2L 21041136 21041166 chr2L 21049397 21049426 Tirant 6 8260 3.0 2.0 2.5 1.7 8290 chr2L 21041136 intron CG42238 - chr2L 21045281 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-812 350 chr2L 21396598 21396622 chr2L 21396833 21396857 6 235 3.5 1.0 2.2 1.9 259 chr2L 21396598 intergenic not near genes chr2L 21396728 intergenic not near genes chr2L 21396857 intergenic not near genes chr2L_6_21395001 chr2L_21395001 RAL-812 351 chr2L 21597027 21597060 chr2L 21604771 21604804 roo 6 7744 0.5 1.0 0.8 3.3 7777 chr2L 21597027 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604804 intergenic not near genes chr2L_6_21600001 chr2L_21600001 RAL-812 352 chr2L 21755494 21755520 chr2L 21755618 21755644 10 124 4.0 3.5 3.8 2.1 150 chr2L 21755494 intron step - chr2L 21755569 intron step - chr2L 21755644 intron step - chr2L_10_21755001 chr2L_21755001 RAL-812 353 chr2L 21806225 21806259 chr2L 21806328 21806362 9 103 1.0 1.0 1.0 4.5 137 chr2L 21806225 intergenic not near genes chr2L 21806294 intergenic not near genes chr2L 21806362 intergenic not near genes chr2L_9_21805001 chr2L_21805001 RAL-812 354 chr2L 21809011 21809043 chr2L 21809217 21809248 10 202 4.0 5.0 4.5 1.8 237 chr2L 21809011 intergenic not near genes chr2L 21809130 intergenic not near genes chr2L 21809248 intergenic not near genes chr2L_10_21805001 chr2L_21805001 RAL-812 355 chr2L 21840439 21840474 chr2L 21841351 21841366 10 904 2.0 3.5 2.8 2.6 927 chr2L 21840439 intergenic not near genes chr2L 21840902 intergenic not near genes chr2L 21841366 intergenic not near genes chr2L_10_21840001 chr2L_21840001 RAL-812 356 chr2L 21855477 21855514 chr2L 21855563 21855601 9 87 1.0 1.0 1.0 4.5 124 chr2L 21855477 intron CR44917 + chr2L 21855539 intron CR44917 + chr2L 21855601 intron CR44917 + chr2L_9_21855001 chr2L_21855001 RAL-812 357 chr2L 21859322 21859351 chr2L 21859402 21859431 14 77 2.5 3.0 2.8 3.7 109 chr2L 21859322 intron CR44917 + chr2L 21859376 intron CR44917 + chr2L 21859431 intron CR44917 + chr2L_14_21855001 chr2L_21855001 RAL-812 358 chr2L 21981683 21981715 chr2L 21990848 21990879 roo 6 9165 1.5 7.5 4.5 1.1 9196 chr2L 21981683 exon CG2528 - chr2L 21986281 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_6_21985001 chr2L_21985001 RAL-812 359 chr2L 22192025 22192057 chr2L 22192114 22192146 10 87 2.5 2.0 2.2 3.1 121 chr2L 22192025 intron Ir40a - chr2L 22192086 intron Ir40a - chr2L 22192146 intron Ir40a - chr2L_10_22190001 chr2L_22190001 RAL-812 360 chr2L 22212139 22212154 chr2L 22212686 22212701 5 547 0.5 1.5 1.0 2.5 562 chr2L 22212139 intron Ir40a - chr2L 22212420 intron Ir40a - chr2L 22212701 intron Ir40a - chr2L_5_22210001 chr2L_22210001 RAL-812 361 chr2L 22239426 22239459 chr2L 22239507 22239533 11 79 2.5 4.5 3.5 2.4 107 chr2L 22239426 3` UTR CR43765 - chr2L 22239480 3` UTR CR43765 - chr2L 22239533 3` UTR CR43765 - chr2L_11_22235001 chr2L_22235001 RAL-812 362 chr2L 22258617 22258647 chr2L 22260740 22260771 G6 7 2124 2.0 1.0 1.5 2.8 2154 chr2L 22258617 intergenic Tif-IA + chr2L 22259694 intergenic not near genes chr2L 22260771 intergenic not near genes chr2L_7_22255001 chr2L_22255001 RAL-812 363 chr2L 22294354 22294386 chr2L 22294442 22294474 4 88 1.0 1.0 1.0 2.0 120 chr2L 22294354 intergenic not near genes chr2L 22294414 intergenic not near genes chr2L 22294474 intergenic not near genes chr2L_4_22290001 chr2L_22290001 RAL-812 364 chr2L 22679805 22679828 chr2L 22684575 22684600 F-element 9 4771 1.5 3.5 2.5 2.6 4795 chr2L 22679805 intron CG40006 - chr2L 22682202 intron CG40006 - chr2L 22684600 intron CG40006 - chr2L_9_22680001 chr2L_22680001 RAL-812 365 chr2R 529323 529349 chr2R 537948 537974 Max-element 7 8625 1.0 2.5 1.8 2.5 8651 chr2R 529323 intron CG40378 + chr2R 533648 intron CG40378 + chr2R 537974 intron CG40378 + chr2R_7_530001 chr2R_530001 RAL-812 366 chr2R 1082369 1082382 chr2R 1087127 1087158 Doc 6 4760 3.5 6.5 5.0 1.0 4789 chr2R 1082369 intron rl + chr2R 1084764 intron rl + chr2R 1087158 intron rl + chr2R_6_1080001 chr2R_1080001 RAL-812 367 chr2R 2498982 2499014 chr2R 2508129 2508159 roo 6 9146 2.5 1.0 1.8 2.1 9177 chr2R 2498982 intron MFS17 - chr2R 2503570 intron MFS17 - chr2R 2508159 intron MFS17 - chr2R_6_2500001 chr2R_2500001 RAL-812 368 chr2R 3291818 3292101 chr2R 3914992 3915261 4 623164 6.5 16.5 11.5 0.3 623443 chr2R 3291818 intergenic not near genes chr2R 3603540 intergenic not near genes chr2R 3915261 intron uex - chr2R_4_3600001 chr2R_3600001 RAL-812 369 chr2R 3293744 3293773 chr2R 3293821 3293851 9 77 1.0 1.5 1.2 4.1 107 chr2R 3293744 intergenic not near genes chr2R 3293798 intergenic not near genes chr2R 3293851 intergenic not near genes chr2R_9_3290001 chr2R_3290001 RAL-812 370 chr2R 4580206 4580217 chr2R 4580831 4580844 7 626 2.5 2.5 2.5 2.0 638 chr2R 4580206 intergenic not near genes chr2R 4580525 intergenic not near genes chr2R 4580844 intergenic not near genes chr2R_7_4580001 chr2R_4580001 RAL-812 371 chr2R 4604554 4604581 chr2R 4604633 4604660 14 78 3.5 4.0 3.8 2.9 106 chr2R 4604554 intron p120ctn + chr2R 4604607 intron p120ctn + chr2R 4604660 intron p120ctn + chr2R_14_4600001 chr2R_4600001 RAL-812 372 chr2R 4656782 4656811 chr2R 4656992 4657015 10 207 25.0 17.5 21.2 0.5 233 chr2R 4656782 intergenic not near genes chr2R 4656898 intergenic not near genes chr2R 4657015 intergenic not near genes chr2R_10_4655001 chr2R_4655001 RAL-812 373 chr2R 4900669 4900690 chr2R 4900775 4900796 6 106 2.0 1.5 1.8 2.1 127 chr2R 4900669 intron CG44102 - chr2R 4900732 intron CG44102 - chr2R 4900796 intron CG44102 - chr2R_6_4900001 chr2R_4900001 RAL-812 374 chr2R 5019280 5019305 chr2R 5019365 5019391 7 86 2.5 2.0 2.2 2.2 111 chr2R 5019280 intron Ir41a + chr2R 5019336 intron Ir41a + chr2R 5019391 intron Ir41a + chr2R_7_5015001 chr2R_5015001 RAL-812 375 chr2R 5040749 5040757 chr2R 5041242 5041248 6 492 0.0 1.0 0.5 4.0 499 chr2R 5040749 intergenic not near genes chr2R 5040998 intergenic not near genes chr2R 5041248 intergenic not near genes chr2R_6_5040001 chr2R_5040001 RAL-812 376 chr2R 5075221 5075245 chr2R 5075349 5075373 13 127 4.5 0.0 2.2 4.1 152 chr2R 5075221 intergenic not near genes chr2R 5075297 intergenic not near genes chr2R 5075373 intergenic not near genes chr2R_13_5075001 chr2R_5075001 RAL-812 377 chr2R 5075349 5075368 chr2R 5075765 5075783 7 416 0.0 5.0 2.5 2.0 434 chr2R 5075349 intergenic not near genes chr2R 5075566 intergenic not near genes chr2R 5075783 intergenic not near genes chr2R_7_5075001 chr2R_5075001 RAL-812 378 chr2R 5080793 5080818 chr2R 5080881 5080906 11 89 2.5 3.5 3.0 2.8 113 chr2R 5080793 intergenic not near genes chr2R 5080850 intergenic not near genes chr2R 5080906 intergenic not near genes chr2R_11_5080001 chr2R_5080001 RAL-812 379 chr2R 5237349 5237367 chr2R 5237430 5237447 4 81 1.0 1.0 1.0 2.0 98 chr2R 5237349 intron Nipped-A - chr2R 5237398 intron Nipped-A - chr2R 5237447 intron Nipped-A - chr2R_4_5235001 chr2R_5235001 RAL-812 380 chr2R 5303494 5303506 chr2R 5303582 5303594 4 88 2.5 1.5 2.0 1.3 100 chr2R 5303494 intergenic not near genes chr2R 5303544 intergenic not near genes chr2R 5303594 intergenic not near genes chr2R_4_5300001 chr2R_5300001 RAL-812 381 chr2R 5417996 5418026 chr2R 5420628 5420658 Burdock 4 2632 1.0 1.0 1.0 2.0 2662 chr2R 5417996 intron laccase2 + chr2R 5419327 intron laccase2 + chr2R 5420658 intron laccase2 + chr2R_4_5415001 chr2R_5415001 RAL-812 382 chr2R 5472367 5472393 chr2R 5472462 5472488 13 94 4.5 0.5 2.5 3.7 121 chr2R 5472367 intron CG30440 - chr2R 5472428 intron CG30440 - chr2R 5472488 intron CG30440 - chr2R_13_5470001 chr2R_5470001 RAL-812 383 chr2R 5509517 5509540 chr2R 5509613 5509636 11 96 3.5 5.0 4.2 2.1 119 chr2R 5509517 intron CG30438 + chr2R 5509576 intron CG30438 + chr2R 5509636 intron CG30438 + chr2R_11_5505001 chr2R_5505001 RAL-812 384 chr2R 5869278 5869299 chr2R 5874353 5874375 flea 4 5076 1.0 3.0 2.0 1.3 5097 chr2R 5869278 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874375 intergenic not near genes chr2R_4_5870001 chr2R_5870001 RAL-812 385 chr2R 5878923 5878946 chr2R 5879003 5879026 5 80 1.0 2.0 1.5 2.0 103 chr2R 5878923 intergenic CG44438 - chr2R 5878974 intergenic CG44438 - chr2R 5879026 intergenic CG44438 - chr2R_5_5875001 chr2R_5875001 RAL-812 386 chr2R 5917772 5917803 chr2R 5917851 5917882 11 79 6.0 6.0 6.0 1.6 110 chr2R 5917772 intron CG43366 + chr2R 5917827 intron CG43366 + chr2R 5917882 intron CG43366 + chr2R_11_5915001 chr2R_5915001 RAL-812 387 chr2R 5932793 5932824 chr2R 5932872 5932903 8 77 14.0 11.5 12.8 0.6 110 chr2R 5932793 intergenic not near genes chr2R 5932848 intergenic not near genes chr2R 5932903 intergenic not near genes chr2R_8_5930001 chr2R_5930001 RAL-812 388 chr2R 6096731 6096752 chr2R 6101909 6101917 BS 4 5170 5.5 6.0 5.8 0.6 5186 chr2R 6096731 intron EcR - chr2R 6099324 intron EcR - chr2R 6101917 intron EcR - chr2R_4_6095001 chr2R_6095001 RAL-812 389 chr2R 6129334 6129358 chr2R 6129412 6129436 10 78 1.5 4.5 3.0 2.5 102 chr2R 6129334 intron EcR - chr2R 6129385 intron EcR - chr2R 6129436 intron EcR - chr2R_10_6125001 chr2R_6125001 RAL-812 390 chr2R 6168194 6168228 chr2R 6168276 6168309 7 82 1.5 1.5 1.5 2.8 115 chr2R 6168194 intron EcR - chr2R 6168252 intron EcR - chr2R 6168309 intron EcR - chr2R_7_6165001 chr2R_6165001 RAL-812 391 chr2R 6194687 6194699 chr2R 6194770 6194782 4 82 7.5 7.5 7.5 0.5 95 chr2R 6194687 intron Ptr - chr2R 6194734 intron Ptr - chr2R 6194782 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-812 392 chr2R 6706969 6706996 chr2R 6707230 6707257 5 261 1.5 9.0 5.2 0.8 288 chr2R 6706969 intron,intron CG3409 -,CG45092 - chr2R 6707113 intron,intron CG3409 -,CG45092 - chr2R 6707257 intron,intron,3` UTR CG3409 -,CG45092 -,mir-4975 - chr2R_5_6705001 chr2R_6705001 RAL-812 393 chr2R 6895922 6895948 chr2R 6896038 6896069 10 122 6.0 4.5 5.2 1.6 147 chr2R 6895922 intron CG30158 + chr2R 6895996 intron CG30158 + chr2R 6896069 intron CG30158 + chr2R_10_6895001 chr2R_6895001 RAL-812 394 chr2R 7025899 7025928 chr2R 7025987 7026016 15 86 2.0 4.5 3.2 3.6 117 chr2R 7025899 intron Tsp42Ef + chr2R 7025958 intron Tsp42Ef + chr2R 7026016 intron Tsp42Ef + chr2R_15_7025001 chr2R_7025001 RAL-812 395 chr2R 7029719 7029736 chr2R 7029808 7029827 7 90 2.5 5.0 3.8 1.5 108 chr2R 7029719 intron Tsp42Eg + chr2R 7029773 intron Tsp42Eg + chr2R 7029827 intron Tsp42Eg + chr2R_7_7025001 chr2R_7025001 RAL-812 396 chr2R 7076397 7076416 chr2R 7076469 7076501 6 83 2.0 2.0 2.0 2.0 104 chr2R 7076397 intergenic not near genes chr2R 7076449 intergenic not near genes chr2R 7076501 intergenic not near genes chr2R_6_7075001 chr2R_7075001 RAL-812 397 chr2R 7139944 7139956 chr2R 7141420 7141436 hopper2 12 1489 1.5 10.0 5.8 1.8 1492 chr2R 7139944 intergenic not near genes chr2R 7140690 intergenic not near genes chr2R 7141436 intergenic not near genes chr2R_12_7140001 chr2R_7140001 RAL-812 398 chr2R 7189041 7189069 chr2R 7189128 7189156 15 87 3.5 4.5 4.0 3.0 115 chr2R 7189041 intron pk + chr2R 7189098 intron pk + chr2R 7189156 intron pk + chr2R_15_7185001 chr2R_7185001 RAL-812 399 chr2R 7196568 7196575 chr2R 7201342 7201350 F-element 4 4774 6.5 0.5 3.5 0.9 4782 chr2R 7196568 intron pk + chr2R 7198959 intron pk + chr2R 7201350 intron pk + chr2R_4_7195001 chr2R_7195001 RAL-812 400 chr2R 7225401 7225434 chr2R 7225487 7225520 15 88 1.5 3.0 2.2 4.7 119 chr2R 7225401 intergenic not near genes chr2R 7225460 intergenic not near genes chr2R 7225520 intergenic not near genes chr2R_15_7225001 chr2R_7225001 RAL-812 401 chr2R 7226273 7226285 chr2R 7226366 7226386 4 99 3.5 7.5 5.5 0.6 113 chr2R 7226273 intergenic not near genes chr2R 7226330 intergenic not near genes chr2R 7226386 intergenic not near genes chr2R_4_7225001 chr2R_7225001 RAL-812 402 chr2R 7235826 7235851 chr2R 7240918 7240927 jockey 6 5088 3.0 2.5 2.8 1.6 5101 chr2R 7235826 intergenic not near genes chr2R 7238376 intergenic not near genes chr2R 7240927 intergenic not near genes chr2R_6_7235001 chr2R_7235001 RAL-812 403 chr2R 7418142 7418155 chr2R 7418220 7418234 4 78 2.5 0.5 1.5 1.6 92 chr2R 7418142 intergenic not near genes chr2R 7418188 intergenic not near genes chr2R 7418234 intergenic not near genes chr2R_4_7415001 chr2R_7415001 RAL-812 404 chr2R 7434893 7434918 chr2R 7439194 7439219 Juan 8 4301 1.0 3.0 2.0 2.7 4326 chr2R 7434893 intergenic so + chr2R 7437056 intergenic not near genes chr2R 7439219 intergenic not near genes chr2R_8_7435001 chr2R_7435001 RAL-812 405 chr2R 7459279 7459306 chr2R 7459367 7459391 5 87 0.5 0.5 0.5 3.3 112 chr2R 7459279 intergenic Inos -,CG11141 - chr2R 7459335 intergenic CG11141 -,Inos - chr2R 7459391 intergenic CG11141 - chr2R_5_7455001 chr2R_7455001 RAL-812 406 chr2R 7608416 7608437 chr2R 7613608 7613624 I-element 4 5196 1.5 0.0 0.8 2.2 5208 chr2R 7608416 intron CG1358 - chr2R 7611020 intron CG1358 - chr2R 7613624 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-812 407 chr2R 7614503 7614518 chr2R 7614568 7614595 4 73 2.5 6.0 4.2 0.8 92 chr2R 7614503 intron CG1358 - chr2R 7614549 intron CG1358 - chr2R 7614595 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-812 408 chr2R 7642869 7642889 chr2R 7642949 7642961 9 79 3.0 3.5 3.2 2.1 92 chr2R 7642869 intron CG43340 + chr2R 7642915 intron CG43340 + chr2R 7642961 intron CG43340 + chr2R_9_7640001 chr2R_7640001 RAL-812 409 chr2R 7692012 7692035 chr2R 7692093 7692116 6 81 3.0 2.5 2.8 1.6 104 chr2R 7692012 intron CG1399 - chr2R 7692064 intron CG1399 - chr2R 7692116 intron CG1399 - chr2R_6_7690001 chr2R_7690001 RAL-812 410 chr2R 7815671 7815700 chr2R 7822140 7822168 Burdock 8 6468 2.5 2.5 2.5 2.3 6497 chr2R 7815671 intergenic CG1882 + chr2R 7818920 intergenic not near genes chr2R 7822168 3` UTR cathD - chr2R_8_7815001 chr2R_7815001 RAL-812 411 chr2R 7869191 7869215 chr2R 7873977 7874001 Doc 10 4785 4.0 4.5 4.2 1.9 4810 chr2R 7869191 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874001 intron Dgk - chr2R_10_7870001 chr2R_7870001 RAL-812 412 chr2R 7879260 7879289 chr2R 7879350 7879378 7 87 3.0 3.0 3.0 1.8 118 chr2R 7879260 intron Dgk - chr2R 7879319 intron Dgk - chr2R 7879378 intron Dgk - chr2R_7_7875001 chr2R_7875001 RAL-812 413 chr2R 7942939 7942958 chr2R 7943190 7943215 5 256 1.0 2.0 1.5 2.0 276 chr2R 7942939 intron CG14764 - chr2R 7943077 intron CG14764 - chr2R 7943215 intron CG14764 - chr2R_5_7940001 chr2R_7940001 RAL-812 414 chr2R 8015660 8015684 chr2R 8017683 8017707 10 2021 1.0 7.0 4.0 2.0 2047 chr2R 8015660 intergenic mir-4981 + chr2R 8016684 intergenic not near genes chr2R 8017707 intergenic not near genes chr2R_10_8015001 chr2R_8015001 RAL-812 415 chr2R 8067064 8067096 chr2R 8067148 8067180 10 84 1.5 4.0 2.8 2.6 116 chr2R 8067064 intron CG17977 - chr2R 8067122 intron CG17977 - chr2R 8067180 exon CG17977 - chr2R_10_8065001 chr2R_8065001 RAL-812 416 chr2R 8076678 8076709 chr2R 8076758 8076789 11 80 3.5 2.5 3.0 2.8 111 chr2R 8076678 intron lig + chr2R 8076734 intron lig + chr2R 8076789 intron lig + chr2R_11_8075001 chr2R_8075001 RAL-812 417 chr2R 8089265 8089287 chr2R 8089351 8089373 10 85 1.5 2.5 2.0 3.3 108 chr2R 8089265 3` UTR sut2 + chr2R 8089319 intergenic sut2 +,sut3 + chr2R 8089373 intergenic sut2 +,sut3 + chr2R_10_8085001 chr2R_8085001 RAL-812 418 chr2R 8151607 8151641 chr2R 8151687 8151721 6 80 1.0 1.0 1.0 3.0 114 chr2R 8151607 intron,intron Lpin -,kermit - chr2R 8151664 intron,intron Lpin -,kermit - chr2R 8151721 intron,intron Lpin -,kermit - chr2R_6_8150001 chr2R_8150001 RAL-812 419 chr2R 8203758 8203774 chr2R 8203850 8203865 6 92 1.0 1.0 1.0 3.0 107 chr2R 8203758 intron LRP1 + chr2R 8203812 intron LRP1 + chr2R 8203865 intron LRP1 + chr2R_6_8200001 chr2R_8200001 RAL-812 420 chr2R 8329450 8329482 chr2R 8329534 8329566 6 84 6.5 3.0 4.8 1.0 116 chr2R 8329450 intron pdm3 + chr2R 8329508 intron pdm3 + chr2R 8329566 intron pdm3 + chr2R_6_8325001 chr2R_8325001 RAL-812 421 chr2R 8398231 8398243 chr2R 8402986 8403024 Doc 5 4776 3.0 4.0 3.5 1.1 4793 chr2R 8398231 intron CG2121 - chr2R 8400628 intron CG2121 - chr2R 8403024 intron CG2121 - chr2R_5_8400001 chr2R_8400001 RAL-812 422 chr2R 8518780 8518802 chr2R 12066249 12066271 4 3547465 9.0 1.0 5.0 0.7 3547491 chr2R 8518780 intron mtt - chr2R 10292526 intron CAP + chr2R 12066271 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-812 423 chr2R 8565392 8565407 chr2R 8565467 8565483 8 75 1.5 5.0 3.2 1.9 91 chr2R 8565392 exon Cyp6a14 - chr2R 8565438 exon Cyp6a14 - chr2R 8565483 exon Cyp6a14 - chr2R_8_8565001 chr2R_8565001 RAL-812 424 chr2R 8566033 8566065 chr2R 8566985 8567017 1360 9 952 2.5 5.5 4.0 1.8 984 chr2R 8566033 5` UTR Cyp6a14 - chr2R 8566525 5` UTR Cyp6a14 - chr2R 8567017 5` UTR Cyp6a14 - chr2R_9_8565001 chr2R_8565001 RAL-812 425 chr2R 8714707 8714722 chr2R 8714794 8714802 6 86 0.0 2.5 1.2 2.7 95 chr2R 8714707 3` UTR PGRP-SC1b + chr2R 8714754 3` UTR PGRP-SC1b + chr2R 8714802 3` UTR PGRP-SC1b + chr2R_6_8710001 chr2R_8710001 RAL-812 426 chr2R 8722762 8722795 chr2R 8723003 8723021 pogo 10 235 3.0 3.0 3.0 2.5 259 chr2R 8722762 intron CG14767 - chr2R 8722892 intron CG14767 - chr2R 8723021 intron CG14767 - chr2R_10_8720001 chr2R_8720001 RAL-812 427 chr2R 8777931 8777944 chr2R 8784135 8784148 diver 5 6204 0.0 3.5 1.8 1.8 6217 chr2R 8777931 intergenic not near genes chr2R 8781040 intergenic not near genes chr2R 8784148 intergenic not near genes chr2R_5_8780001 chr2R_8780001 RAL-812 428 chr2R 8850650 8850654 chr2R 8850989 8851003 7 350 2.5 3.5 3.0 1.8 353 chr2R 8850650 intron sns + chr2R 8850826 intron sns + chr2R 8851003 intron sns + chr2R_7_8850001 chr2R_8850001 RAL-812 429 chr2R 8982205 8982218 chr2R 8982284 8982297 5 79 2.5 1.5 2.0 1.7 92 chr2R 8982205 intron CG8213 - chr2R 8982251 intron CG8213 - chr2R 8982297 intron CG8213 - chr2R_5_8980001 chr2R_8980001 RAL-812 430 chr2R 9151306 9151322 chr2R 9157776 9157792 Burdock 4 6470 7.0 2.0 4.5 0.7 6486 chr2R 9151306 3` UTR CG30345 + chr2R 9154549 intergenic not near genes chr2R 9157792 intergenic CG8008 - chr2R_4_9150001 chr2R_9150001 RAL-812 431 chr2R 9183133 9183160 chr2R 9183215 9183241 6 81 2.5 1.0 1.8 2.1 108 chr2R 9183133 intron ltd - chr2R 9183187 intron ltd - chr2R 9183241 intron ltd - chr2R_6_9180001 chr2R_9180001 RAL-812 432 chr2R 9212713 9212720 chr2R 9213183 9213206 roo 6 480 6.5 4.5 5.5 0.9 493 chr2R 9212713 intergenic CR45309 + chr2R 9212960 intergenic CR45309 + chr2R 9213206 5` UTR CR45309 + chr2R_6_9210001 chr2R_9210001 RAL-812 433 chr2R 9236512 9236540 chr2R 9237285 9237312 10 772 4.0 3.0 3.5 2.2 800 chr2R 9236512 intron hig - chr2R 9236912 intron hig - chr2R 9237312 intron hig - chr2R_10_9235001 chr2R_9235001 RAL-812 434 chr2R 9267990 9268007 chr2R 9268076 9268093 6 86 3.5 2.0 2.8 1.6 103 chr2R 9267990 intron Pkn - chr2R 9268042 intron Pkn - chr2R 9268093 intron Pkn - chr2R_6_9265001 chr2R_9265001 RAL-812 435 chr2R 9368127 9368150 chr2R 9368203 9368223 10 74 2.5 0.0 1.2 4.5 96 chr2R 9368127 intron CG13954 - chr2R 9368175 intron CG13954 - chr2R 9368223 intron CG13954 - chr2R_10_9365001 chr2R_9365001 RAL-812 436 chr2R 9388657 9388685 chr2R 9388744 9388772 5 86 1.5 3.5 2.5 1.4 115 chr2R 9388657 5` UTR CG13954 - chr2R 9388714 5` UTR CG13954 - chr2R 9388772 5` UTR CG13954 - chr2R_5_9385001 chr2R_9385001 RAL-812 437 chr2R 9412076 9412098 chr2R 9412187 9412209 6 111 5.5 3.0 4.2 1.2 133 chr2R 9412076 intron wun - chr2R 9412142 intron wun - chr2R 9412209 intron wun - chr2R_6_9410001 chr2R_9410001 RAL-812 438 chr2R 9510669 9510692 chr2R 9510785 9510808 10 116 1.5 2.5 2.0 3.3 139 chr2R 9510669 intron brp + chr2R 9510738 intron brp + chr2R 9510808 intron brp + chr2R_10_9510001 chr2R_9510001 RAL-812 439 chr2R 9541624 9541641 chr2R 9541701 9541718 8 77 0.0 1.0 0.5 5.3 94 chr2R 9541624 intergenic brp +,CG1888 - chr2R 9541671 intergenic brp +,CG1888 - chr2R 9541718 intergenic brp +,CG1888 - chr2R_8_9540001 chr2R_9540001 RAL-812 440 chr2R 9650953 9650966 chr2R 9651029 9651057 5 88 3.5 3.5 3.5 1.1 104 chr2R 9650953 intron Mmp2 - chr2R 9651005 intron Mmp2 - chr2R 9651057 intron Mmp2 - chr2R_5_9650001 chr2R_9650001 RAL-812 441 chr2R 9754742 9754759 chr2R 9754826 9754832 6 82 4.5 4.5 4.5 1.1 90 chr2R 9754742 intron trpl + chr2R 9754787 intron trpl + chr2R 9754832 intron trpl + chr2R_6_9750001 chr2R_9750001 RAL-812 442 chr2R 9791718 9791739 chr2R 9792130 9792146 7 411 2.5 1.0 1.8 2.5 428 chr2R 9791718 intron CG1688 - chr2R 9791932 intron CG1688 - chr2R 9792146 intron CG1688 - chr2R_7_9790001 chr2R_9790001 RAL-812 443 chr2R 9794714 9794747 chr2R 9794822 9794854 10 108 3.5 4.0 3.8 2.1 140 chr2R 9794714 intron,intron CG1688 -,CG1698 + chr2R 9794784 intron,intron CG1688 -,CG1698 + chr2R 9794854 intron,intron CG1688 -,CG1698 + chr2R_10_9790001 chr2R_9790001 RAL-812 444 chr2R 9869680 9869688 chr2R 9869791 9869799 5 111 2.0 2.5 2.2 1.6 119 chr2R 9869680 intron cbx - chr2R 9869740 intron cbx - chr2R 9869799 intron cbx - chr2R_5_9865001 chr2R_9865001 RAL-812 445 chr2R 9935031 9935057 chr2R 9935113 9935138 10 80 0.0 3.5 1.8 3.6 107 chr2R 9935031 intron Mef2 - chr2R 9935084 intron Mef2 - chr2R 9935138 intron Mef2 - chr2R_10_9935001 chr2R_9935001 RAL-812 446 chr2R 9945437 9945441 chr2R 9945633 9945637 BS 4 195 8.0 2.5 5.2 0.6 200 chr2R 9945437 intron Mef2 - chr2R 9945537 intron Mef2 - chr2R 9945637 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-812 447 chr2R 9945442 9945469 chr2R 9945627 9945665 BS 7 193 3.5 2.5 3.0 1.8 223 chr2R 9945442 intron Mef2 - chr2R 9945554 intron Mef2 - chr2R 9945665 intron Mef2 - chr2R_7_9945001 chr2R_9945001 RAL-812 448 chr2R 9950298 9950325 chr2R 9950375 9950400 6 76 2.0 2.0 2.0 2.0 102 chr2R 9950298 intron Mef2 - chr2R 9950349 intron Mef2 - chr2R 9950400 intron Mef2 - chr2R_6_9950001 chr2R_9950001 RAL-812 449 chr2R 10005848 10005882 chr2R 10007013 10007025 1360 11 1161 6.5 1.5 4.0 2.2 1177 chr2R 10005848 intron Pka-R2 - chr2R 10006436 intron Pka-R2 - chr2R 10007025 intron Pka-R2 - chr2R_11_10005001 chr2R_10005001 RAL-812 450 chr2R 10132201 10132222 chr2R 10132281 10132302 7 80 2.5 6.0 4.2 1.3 101 chr2R 10132201 intron gem + chr2R 10132252 intron gem + chr2R 10132302 intron gem + chr2R_7_10130001 chr2R_10130001 RAL-812 451 chr2R 10171110 10171140 chr2R 10171194 10171224 5 84 1.5 3.0 2.2 1.6 114 chr2R 10171110 intron KCNQ - chr2R 10171167 intron KCNQ - chr2R 10171224 intron KCNQ - chr2R_5_10170001 chr2R_10170001 RAL-812 452 chr2R 10216196 10216222 chr2R 10216274 10216300 11 77 2.0 2.0 2.0 3.7 104 chr2R 10216196 intron,intron CG12912 -,Hr46 - chr2R 10216248 intron,intron CG12912 -,Hr46 - chr2R 10216300 intron,intron CG12912 -,Hr46 - chr2R_11_10215001 chr2R_10215001 RAL-812 453 chr2R 10225733 10225747 chr2R 10225814 10225829 5 82 2.5 2.5 2.5 1.4 96 chr2R 10225733 intron,intron CG12912 -,Hr46 - chr2R 10225781 intron,intron CG12912 -,Hr46 - chr2R 10225829 intron,intron CG12912 -,Hr46 - chr2R_5_10225001 chr2R_10225001 RAL-812 454 chr2R 10313325 10313352 chr2R 10313412 10313440 9 88 1.0 4.0 2.5 2.6 115 chr2R 10313325 intergenic not near genes chr2R 10313382 intergenic not near genes chr2R 10313440 intergenic Ndg + chr2R_9_10310001 chr2R_10310001 RAL-812 455 chr2R 10319716 10319739 chr2R 10319807 10319831 9 91 5.5 2.0 3.8 1.9 115 chr2R 10319716 intron Ndg + chr2R 10319774 intron Ndg + chr2R 10319831 intron Ndg + chr2R_9_10315001 chr2R_10315001 RAL-812 456 chr2R 10385229 10385250 chr2R 10385339 10385360 9 109 3.0 1.5 2.2 2.8 131 chr2R 10385229 intron CG42732 - chr2R 10385294 intron CG42732 - chr2R 10385360 intron CG42732 - chr2R_9_10385001 chr2R_10385001 RAL-812 457 chr2R 10387986 10388000 chr2R 10388083 10388097 8 95 0.0 3.0 1.5 3.2 111 chr2R 10387986 intron CG42732 - chr2R 10388042 intron CG42732 - chr2R 10388097 intron CG42732 - chr2R_8_10385001 chr2R_10385001 RAL-812 458 chr2R 10400402 10400423 chr2R 10400482 10400482 15 77 3.5 5.5 4.5 2.7 80 chr2R 10400402 intron CG42732 - chr2R 10400442 intron CG42732 - chr2R 10400482 intron CG42732 - chr2R_15_10400001 chr2R_10400001 RAL-812 459 chr2R 10409066 10409081 chr2R 10409142 10409156 7 75 1.0 2.0 1.5 2.8 90 chr2R 10409066 intron CG42732 - chr2R 10409111 intron CG42732 - chr2R 10409156 intron,exon CG42732 -,CG33477 - chr2R_7_10405001 chr2R_10405001 RAL-812 460 chr2R 10429021 10429036 chr2R 10429098 10429109 5 76 5.0 1.0 3.0 1.2 88 chr2R 10429021 intergenic not near genes chr2R 10429065 intergenic not near genes chr2R 10429109 intergenic not near genes chr2R_5_10425001 chr2R_10425001 RAL-812 461 chr2R 10454095 10454130 chr2R 10454172 10454207 9 76 1.5 3.5 2.5 2.6 112 chr2R 10454095 intron,intron Galphao +,Cyp49a1 - chr2R 10454151 intron,intron Galphao +,Cyp49a1 - chr2R 10454207 intron,intron Galphao +,Cyp49a1 - chr2R_9_10450001 chr2R_10450001 RAL-812 462 chr2R 10469037 10469053 chr2R 10469152 10469169 11 115 4.0 4.5 4.2 2.1 132 chr2R 10469037 intron CG11777 + chr2R 10469103 intron CG11777 + chr2R 10469169 intron CG11777 + chr2R_11_10465001 chr2R_10465001 RAL-812 463 chr2R 10477171 10477188 chr2R 10477511 10477528 4 340 2.5 0.0 1.2 1.8 357 chr2R 10477171 intron whd - chr2R 10477350 intron whd - chr2R 10477528 intron whd - chr2R_4_10475001 chr2R_10475001 RAL-812 464 chr2R 10644062 10644074 chr2R 10644140 10644151 5 78 2.5 0.5 1.5 2.0 89 chr2R 10644062 intron Git - chr2R 10644106 intron Git - chr2R 10644151 intron Git - chr2R_5_10640001 chr2R_10640001 RAL-812 465 chr2R 10658057 10658087 chr2R 10658149 10658179 18 92 3.0 5.5 4.2 3.5 122 chr2R 10658057 intergenic not near genes chr2R 10658118 intergenic not near genes chr2R 10658179 intergenic not near genes chr2R_18_10655001 chr2R_10655001 RAL-812 466 chr2R 10671253 10671266 chr2R 10671331 10671343 8 78 8.5 0.0 4.2 1.5 90 chr2R 10671253 intergenic not near genes chr2R 10671298 intergenic not near genes chr2R 10671343 intergenic not near genes chr2R_8_10670001 chr2R_10670001 RAL-812 467 chr2R 10671270 10671288 chr2R 10671329 10671354 8 69 4.0 0.0 2.0 2.7 84 chr2R 10671270 intergenic not near genes chr2R 10671312 intergenic not near genes chr2R 10671354 intergenic not near genes chr2R_8_10670001 chr2R_10670001 RAL-812 468 chr2R 10748730 10748757 chr2R 10748807 10748831 6 74 2.0 2.0 2.0 2.0 101 chr2R 10748730 intron CG33144 - chr2R 10748780 intron CG33144 - chr2R 10748831 intron CG33144 - chr2R_6_10745001 chr2R_10745001 RAL-812 469 chr2R 10758790 10758825 chr2R 10758889 10758924 9 96 3.5 3.0 3.2 2.1 134 chr2R 10758790 intron CG33144 - chr2R 10758857 intron CG33144 - chr2R 10758924 intron CG33144 - chr2R_9_10755001 chr2R_10755001 RAL-812 470 chr2R 10761556 10761584 chr2R 10761710 10761726 5 152 1.0 1.5 1.2 2.3 170 chr2R 10761556 intron,5` UTR CG33144 -,CR43605 + chr2R 10761641 intron,5` UTR CG33144 -,CR43605 + chr2R 10761726 intron CG33144 - chr2R_5_10760001 chr2R_10760001 RAL-812 471 chr2R 10827335 10827361 chr2R 10827420 10827449 9 86 2.5 4.0 3.2 2.1 114 chr2R 10827335 exon CG12325 + chr2R 10827392 3` UTR CG12325 + chr2R 10827449 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_9_10825001 chr2R_10825001 RAL-812 472 chr2R 10948030 10948062 chr2R 10955580 10955612 17.6 12 7548 2.5 4.5 3.5 2.7 7582 chr2R 10948030 intergenic not near genes chr2R 10951821 intergenic not near genes chr2R 10955612 intergenic not near genes chr2R_12_10950001 chr2R_10950001 RAL-812 473 chr2R 11009812 11009845 chr2R 11018986 11019019 roo 8 9172 1.0 2.0 1.5 3.2 9207 chr2R 11009812 intron luna - chr2R 11014416 intron luna - chr2R 11019019 intron luna - chr2R_8_11010001 chr2R_11010001 RAL-812 474 chr2R 11019883 11019913 chr2R 11024949 11024955 jockey 12 5064 2.5 3.5 3.0 3.0 5072 chr2R 11019883 intron luna - chr2R 11022419 intron luna - chr2R 11024955 intron luna - chr2R_12_11020001 chr2R_11020001 RAL-812 475 chr2R 11207814 11207840 chr2R 11208005 11208005 BS 9 189 10.0 3.0 6.5 1.2 191 chr2R 11207814 intron shn + chr2R 11207910 intron shn + chr2R 11208005 intron shn + chr2R_9_11205001 chr2R_11205001 RAL-812 476 chr2R 11415520 11415550 chr2R 11418669 11418699 opus 6 3148 2.0 7.0 4.5 1.1 3179 chr2R 11415520 intron Drip - chr2R 11417110 intron Drip - chr2R 11418699 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-812 477 chr2R 11485115 11485145 chr2R 11485193 11485226 8 81 2.5 4.0 3.2 1.9 111 chr2R 11485115 intron inv + chr2R 11485170 intron inv + chr2R 11485226 intron inv + chr2R_8_11485001 chr2R_11485001 RAL-812 478 chr2R 11499809 11499816 chr2R 11500026 11500029 4 224 1.0 3.0 2.0 1.3 220 chr2R 11499809 intron inv + chr2R 11499919 intron inv + chr2R 11500029 intron inv + chr2R_4_11495001 chr2R_11495001 RAL-812 479 chr2R 11535132 11535161 chr2R 11535209 11535238 7 74 4.0 3.5 3.8 1.5 106 chr2R 11535132 intergenic not near genes chr2R 11535185 intergenic not near genes chr2R 11535238 intergenic not near genes chr2R_7_11535001 chr2R_11535001 RAL-812 480 chr2R 11636417 11636440 chr2R 11636489 11636517 7 74 1.5 2.0 1.8 2.5 100 chr2R 11636417 intron CG9005 - chr2R 11636467 intron CG9005 - chr2R 11636517 intron CG9005 - chr2R_7_11635001 chr2R_11635001 RAL-812 481 chr2R 11922739 11922765 chr2R 11922818 11922844 5 79 3.0 0.0 1.5 2.0 105 chr2R 11922739 intergenic not near genes chr2R 11922792 intergenic not near genes chr2R 11922844 intergenic not near genes chr2R_5_11920001 chr2R_11920001 RAL-812 482 chr2R 8518779 8518804 chr2R 12066173 12066201 5 3547395 9.0 12.0 10.5 0.4 3547422 chr2R 8518779 intron mtt - chr2R 10292490 intron CAP + chr2R 12066201 intron CG8888 - chr2R_5_10290001 chr2R_10290001 RAL-812 483 chr2R 12124834 12124862 chr2R 12124918 12124946 8 84 2.5 3.0 2.8 2.1 112 chr2R 12124834 intergenic not near genes chr2R 12124890 intergenic not near genes chr2R 12124946 intergenic not near genes chr2R_8_12120001 chr2R_12120001 RAL-812 484 chr2R 12186000 12186037 chr2R 12186095 12186129 5 94 0.5 1.0 0.8 2.8 129 chr2R 12186000 intron Cyp6g1 + chr2R 12186064 intron Cyp6g1 + chr2R 12186129 intron Cyp6g1 + chr2R_5_12185001 chr2R_12185001 RAL-812 485 chr2R 12187471 12187508 chr2R 12190087 12190124 38 2622 100.5 75.0 87.8 0.4 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_38_12185001 chr2R_12185001 RAL-812 486 chr2R 12217578 12217601 chr2R 12217659 12217682 6 78 2.0 2.5 2.2 1.9 104 chr2R 12217578 intergenic not near genes chr2R 12217630 intergenic not near genes chr2R 12217682 intergenic not near genes chr2R_6_12215001 chr2R_12215001 RAL-812 487 chr2R 12363386 12363417 chr2R 12363818 12363849 13 432 1.5 4.5 3.0 3.2 463 chr2R 12363386 intergenic CG30043 + chr2R 12363618 intergenic CG30043 + chr2R 12363849 intergenic not near genes chr2R_13_12360001 chr2R_12360001 RAL-812 488 chr2R 12481142 12481169 chr2R 12482943 12482973 roo 7 1798 1.5 4.5 3.0 1.8 1831 chr2R 12481142 exon Dh44-R2 + chr2R 12482058 intron Dh44-R2 + chr2R 12482973 intron Dh44-R2 + chr2R_7_12480001 chr2R_12480001 RAL-812 489 chr2R 12501691 12501725 chr2R 12503849 12503887 Rt1c 8 2161 1.5 2.5 2.0 2.7 2196 chr2R 12501691 intron fdl - chr2R 12502789 intron fdl - chr2R 12503887 intron fdl - chr2R_8_12500001 chr2R_12500001 RAL-812 490 chr2R 12504144 12504177 chr2R 12504221 12504254 12 76 3.0 4.0 3.5 2.7 110 chr2R 12504144 intron fdl - chr2R 12504199 intron fdl - chr2R 12504254 intron fdl - chr2R_12_12500001 chr2R_12500001 RAL-812 491 chr2R 12548546 12548554 chr2R 12548623 12548631 4 77 0.5 11.0 5.8 0.6 85 chr2R 12548546 intron fra + chr2R 12548588 intron fra + chr2R 12548631 intron fra + chr2R_4_12545001 chr2R_12545001 RAL-812 492 chr2R 12602816 12602832 chr2R 12602900 12602916 6 84 0.0 3.5 1.8 2.1 100 chr2R 12602816 intron Amph + chr2R 12602866 intron Amph + chr2R 12602916 intron Amph + chr2R_6_12600001 chr2R_12600001 RAL-812 493 chr2R 12607748 12607754 chr2R 12607869 12607875 6 121 2.0 2.5 2.2 1.9 127 chr2R 12607748 intron Amph + chr2R 12607812 intron Amph + chr2R 12607875 intron Amph + chr2R_6_12605001 chr2R_12605001 RAL-812 494 chr2R 12643791 12643817 chr2R 12643863 12643894 6 74 3.0 1.5 2.2 1.9 103 chr2R 12643791 intron CG8785 - chr2R 12643842 intron CG8785 - chr2R 12643894 exon CG8785 - chr2R_6_12640001 chr2R_12640001 RAL-812 495 chr2R 12670373 12670402 chr2R 12670480 12670509 4 107 0.5 0.0 0.2 3.3 136 chr2R 12670373 intergenic CG42708 -,nemy - chr2R 12670441 intergenic CG42708 -,nemy - chr2R 12670509 3` UTR CG42708 - chr2R_4_12670001 chr2R_12670001 RAL-812 496 chr2R 12949241 12949246 chr2R 12949321 12949326 4 80 5.5 2.0 3.8 0.8 85 chr2R 12949241 exon CG44251 - chr2R 12949284 exon CG44251 - chr2R 12949326 exon CG44251 - chr2R_4_12945001 chr2R_12945001 RAL-812 497 chr2R 13136837 13136868 chr2R 13141635 13141662 Doc 10 4797 2.0 5.0 3.5 2.2 4825 chr2R 13136837 exon Cap-G + chr2R 13139250 intron Cap-G + chr2R 13141662 intron Cap-G + chr2R_10_13135001 chr2R_13135001 RAL-812 498 chr2R 13309663 13309683 chr2R 13309781 13309801 9 118 1.5 0.0 0.8 5.0 138 chr2R 13309663 intergenic not near genes chr2R 13309732 intergenic not near genes chr2R 13309801 intergenic not near genes chr2R_9_13305001 chr2R_13305001 RAL-812 499 chr2R 13389018 13389047 chr2R 13389318 13389347 13 300 23.0 20.0 21.5 0.6 329 chr2R 13389018 intergenic CG43691 - chr2R 13389182 intergenic CG43691 - chr2R 13389347 intergenic CG43691 - chr2R_13_13385001 chr2R_13385001 RAL-812 500 chr2R 13431498 13431512 chr2R 13431577 13431591 4 79 4.0 0.5 2.2 1.2 93 chr2R 13431498 intron CG42321 - chr2R 13431544 intron CG42321 - chr2R 13431591 intron CG42321 - chr2R_4_13430001 chr2R_13430001 RAL-812 501 chr2R 13439109 13439118 chr2R 13439224 13439233 8 115 4.5 1.0 2.8 2.1 124 chr2R 13439109 intergenic CG42321 -,cnn - chr2R 13439171 intergenic CG42321 -,cnn - chr2R 13439233 intergenic cnn -,CG42321 - chr2R_8_13435001 chr2R_13435001 RAL-812 502 chr2R 13497259 13497278 chr2R 13497351 13497370 8 92 2.0 1.5 1.8 2.9 111 chr2R 13497259 intron drk - chr2R 13497314 intron drk - chr2R 13497370 exon drk - chr2R_8_13495001 chr2R_13495001 RAL-812 503 chr2R 13566258 13566284 chr2R 13566338 13566364 9 79 5.5 0.0 2.8 2.4 106 chr2R 13566258 intergenic not near genes chr2R 13566311 intergenic not near genes chr2R 13566364 intergenic not near genes chr2R_9_13565001 chr2R_13565001 RAL-812 504 chr2R 13580503 13580529 chr2R 13580853 13580877 jockey 4 349 0.5 4.0 2.2 1.2 374 chr2R 13580503 3` UTR CG6191 - chr2R 13580690 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580877 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-812 505 chr2R 13635692 13635705 chr2R 13635790 13635804 6 99 0.0 6.5 3.2 1.4 112 chr2R 13635692 intron fas + chr2R 13635748 intron fas + chr2R 13635804 intron fas + chr2R_6_13635001 chr2R_13635001 RAL-812 506 chr2R 13642060 13642084 chr2R 13642135 13642161 7 70 4.0 3.0 3.5 1.6 101 chr2R 13642060 intron fas + chr2R 13642110 intron fas + chr2R 13642161 intron fas + chr2R_7_13640001 chr2R_13640001 RAL-812 507 chr2R 13704261 13704284 chr2R 13704351 13704374 6 90 1.0 2.0 1.5 2.4 113 chr2R 13704261 intron fas + chr2R 13704318 intron fas + chr2R 13704374 intron fas + chr2R_6_13700001 chr2R_13700001 RAL-812 508 chr2R 13749507 13749522 chr2R 13749590 13749608 8 87 4.5 1.0 2.8 2.1 101 chr2R 13749507 intergenic fas + chr2R 13749558 intergenic fas + chr2R 13749608 intergenic fas + chr2R_8_13745001 chr2R_13745001 RAL-812 509 chr2R 13763644 13763670 chr2R 13765709 13765734 8 2064 1.0 1.0 1.0 4.0 2090 chr2R 13763644 intergenic not near genes chr2R 13764689 intergenic not near genes chr2R 13765734 intergenic not near genes chr2R_8_13760001 chr2R_13760001 RAL-812 510 chr2R 13784119 13784139 chr2R 13784343 13784363 5 226 2.5 2.0 2.2 1.6 244 chr2R 13784119 intron,5` UTR Cpr50Ca +,CR43810 + chr2R 13784241 intron,intron Cpr50Ca +,CR43810 + chr2R 13784363 intron,5` UTR Cpr50Ca +,CR43810 + chr2R_5_13780001 chr2R_13780001 RAL-812 511 chr2R 13905614 13905623 chr2R 13907596 13907604 Rt1a 4 1982 1.0 5.5 3.2 1.0 1990 chr2R 13905614 intron shot - chr2R 13906609 intron shot - chr2R 13907604 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-812 512 chr2R 13925849 13925869 chr2R 13926025 13926045 9 176 2.0 3.5 2.8 2.4 196 chr2R 13925849 intron shot - chr2R 13925947 intron shot - chr2R 13926045 intron shot - chr2R_9_13925001 chr2R_13925001 RAL-812 513 chr2R 14266770 14266792 chr2R 14266839 14266868 11 73 2.0 2.0 2.0 3.7 98 chr2R 14266770 intron CG8547 - chr2R 14266819 intron CG8547 - chr2R 14266868 intron CG8547 - chr2R_11_14265001 chr2R_14265001 RAL-812 514 chr2R 14290289 14290309 chr2R 14290381 14290401 11 91 5.5 3.0 4.2 2.1 112 chr2R 14290289 intron Ih + chr2R 14290345 intron Ih + chr2R 14290401 intron Ih + chr2R_11_14290001 chr2R_14290001 RAL-812 515 chr2R 14352691 14352720 chr2R 14352785 14352813 10 93 4.5 4.0 4.2 1.9 122 chr2R 14352691 exon CG8613 + chr2R 14352752 intron CG8613 + chr2R 14352813 intron CG8613 + chr2R_10_14350001 chr2R_14350001 RAL-812 516 chr2R 14394227 14394246 chr2R 14399016 14399035 Doc 4 4787 2.0 3.0 2.5 1.1 4808 chr2R 14394227 intergenic not near genes chr2R 14396631 intergenic not near genes chr2R 14399035 intergenic not near genes chr2R_4_14395001 chr2R_14395001 RAL-812 517 chr2R 14467298 14467304 chr2R 14476450 14476455 roo 5 9152 2.0 5.5 3.8 1.0 9157 chr2R 14467298 intergenic not near genes chr2R 14471876 intergenic not near genes chr2R 14476455 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-812 518 chr2R 14467307 14467323 chr2R 14476443 14476475 roo 5 9145 2.5 5.0 3.8 1.0 9168 chr2R 14467307 intergenic not near genes chr2R 14471891 intergenic not near genes chr2R 14476475 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-812 519 chr2R 14535718 14535729 chr2R 14535796 14535807 5 78 0.0 0.0 0.0 5.0 89 chr2R 14535718 intron ttv + chr2R 14535762 intron ttv + chr2R 14535807 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-812 520 chr2R 14538977 14538990 chr2R 14539034 14539035 6 65 9.0 12.0 10.5 0.5 58 chr2R 14538977 intron ttv + chr2R 14539006 intron ttv + chr2R 14539035 intron ttv + chr2R_6_14535001 chr2R_14535001 RAL-812 521 chr2R 14542760 14542790 chr2R 14542854 14542886 10 96 3.0 1.5 2.2 3.1 126 chr2R 14542760 intron ttv + chr2R 14542823 intron ttv + chr2R 14542886 intron ttv + chr2R_10_14540001 chr2R_14540001 RAL-812 522 chr2R 14550528 14550553 chr2R 14550607 14550626 6 78 0.5 2.5 1.5 2.4 98 chr2R 14550528 intron ttv + chr2R 14550577 intron ttv + chr2R 14550626 intron ttv + chr2R_6_14550001 chr2R_14550001 RAL-812 523 chr2R 14566446 14566478 chr2R 14566533 14566565 15 86 3.0 5.0 4.0 3.0 119 chr2R 14566446 intron ttv + chr2R 14566506 intron ttv + chr2R 14566565 intron ttv + chr2R_15_14565001 chr2R_14565001 RAL-812 524 chr2R 14911701 14911727 chr2R 14911824 14911850 8 123 3.5 3.0 3.2 1.9 149 chr2R 14911701 intron CG10249 - chr2R 14911776 intron CG10249 - chr2R 14911850 intron CG10249 - chr2R_8_14910001 chr2R_14910001 RAL-812 525 chr2R 14922146 14922174 chr2R 14922218 14922250 9 75 4.0 2.5 3.2 2.1 104 chr2R 14922146 intron CG10249 - chr2R 14922198 intron CG10249 - chr2R 14922250 intron CG10249 - chr2R_9_14920001 chr2R_14920001 RAL-812 526 chr2R 14985455 14985479 chr2R 14985530 14985553 9 73 2.5 6.5 4.5 1.6 98 chr2R 14985455 intron pcs + chr2R 14985504 intron pcs + chr2R 14985553 intron pcs + chr2R_9_14985001 chr2R_14985001 RAL-812 527 chr2R 15001598 15001609 chr2R 15001693 15001704 4 95 3.0 4.0 3.5 0.9 106 chr2R 15001598 intergenic not near genes chr2R 15001651 intergenic not near genes chr2R 15001704 intergenic not near genes chr2R_4_15000001 chr2R_15000001 RAL-812 528 chr2R 15004739 15004749 chr2R 15005068 15005078 jockey 4 329 5.0 3.5 4.2 0.8 339 chr2R 15004739 intergenic not near genes chr2R 15004908 intergenic not near genes chr2R 15005078 intergenic not near genes chr2R_4_15000001 chr2R_15000001 RAL-812 529 chr2R 15008616 15008650 chr2R 15008737 15008771 9 120 0.5 4.0 2.2 2.8 155 chr2R 15008616 intergenic not near genes chr2R 15008694 intergenic not near genes chr2R 15008771 intergenic not near genes chr2R_9_15005001 chr2R_15005001 RAL-812 530 chr2R 15015459 15015472 chr2R 15022883 15022896 mdg1 5 7424 4.5 0.5 2.5 1.4 7437 chr2R 15015459 intron hbs + chr2R 15019178 intron hbs + chr2R 15022896 intron hbs + chr2R_5_15015001 chr2R_15015001 RAL-812 531 chr2R 15050618 15050649 chr2R 15050696 15050727 9 76 4.0 2.0 3.0 2.2 109 chr2R 15050618 intergenic CR43622 - chr2R 15050672 intergenic CR43622 - chr2R 15050727 intergenic CR43622 - chr2R_9_15050001 chr2R_15050001 RAL-812 532 chr2R 15084981 15084997 chr2R 15092030 15092045 297 5 7049 2.0 3.5 2.8 1.3 7064 chr2R 15084981 intergenic not near genes chr2R 15088513 intergenic not near genes chr2R 15092045 5` UTR CR44457 + chr2R_5_15085001 chr2R_15085001 RAL-812 533 chr2R 15119317 15119345 chr2R 15127797 15127819 Tirant 5 8477 7.0 4.5 5.8 0.7 8502 chr2R 15119317 intron chn + chr2R 15123568 intron chn + chr2R 15127819 intron chn + chr2R_5_15120001 chr2R_15120001 RAL-812 534 chr2R 15137969 15137995 chr2R 15138049 15138077 7 80 3.0 0.0 1.5 2.8 108 chr2R 15137969 intron chn + chr2R 15138023 intron chn + chr2R 15138077 intron chn + chr2R_7_15135001 chr2R_15135001 RAL-812 535 chr2R 15183037 15183069 chr2R 15183128 15183160 14 90 4.0 4.5 4.2 2.7 123 chr2R 15183037 intron igl + chr2R 15183098 intron igl + chr2R 15183160 intron igl + chr2R_14_15180001 chr2R_15180001 RAL-812 536 chr2R 15390407 15390422 chr2R 15390500 15390516 11 93 3.5 3.5 3.5 2.4 109 chr2R 15390407 intergenic not near genes chr2R 15390462 intergenic not near genes chr2R 15390516 intergenic not near genes chr2R_11_15390001 chr2R_15390001 RAL-812 537 chr2R 15537710 15537739 chr2R 15537792 15537821 4 82 1.0 0.0 0.5 2.7 111 chr2R 15537710 3` UTR CG30471 + chr2R 15537766 3` UTR CG30471 + chr2R 15537821 intergenic CG30471 +,CG30467 + chr2R_4_15535001 chr2R_15535001 RAL-812 538 chr2R 15606090 15606107 chr2R 15606167 15606184 7 77 5.0 1.0 3.0 1.8 94 chr2R 15606090 intergenic not near genes chr2R 15606137 intergenic not near genes chr2R 15606184 intergenic not near genes chr2R_7_15605001 chr2R_15605001 RAL-812 539 chr2R 15654614 15654642 chr2R 15654723 15654751 8 109 2.5 1.0 1.8 2.9 137 chr2R 15654614 intron CG42524 + chr2R 15654682 intron CG42524 + chr2R 15654751 intron CG42524 + chr2R_8_15650001 chr2R_15650001 RAL-812 540 chr2R 15655983 15656012 chr2R 15656063 15656068 12 78 3.0 2.5 2.8 3.2 85 chr2R 15655983 intron CG42524 + chr2R 15656026 intron CG42524 + chr2R 15656068 intron CG42524 + chr2R_12_15655001 chr2R_15655001 RAL-812 541 chr2R 15675120 15675136 chr2R 15675197 15675213 4 77 2.0 3.0 2.5 1.1 93 chr2R 15675120 intron fus - chr2R 15675166 intron fus - chr2R 15675213 intron fus - chr2R_4_15675001 chr2R_15675001 RAL-812 542 chr2R 15700020 15700277 chr2R 15700110 15700372 20 91 1.5 2.0 1.8 7.1 352 chr2R 15700020 intron,5` UTR CG30080 -,CG42662 - chr2R 15700196 intron,5` UTR CG30080 -,CG42662 - chr2R 15700372 intron,5` UTR CG30080 -,CG42662 - chr2R_20_15700001 chr2R_15700001 RAL-812 543 chr2R 15791756 15791768 chr2R 15791918 15791930 5 161 8.0 2.0 5.0 0.8 174 chr2R 15791756 intron Zasp52 - chr2R 15791843 intron Zasp52 - chr2R 15791930 intron Zasp52 - chr2R_5_15790001 chr2R_15790001 RAL-812 544 chr2R 15791769 15791783 chr2R 15791917 15791944 6 160 5.0 2.0 3.5 1.3 175 chr2R 15791769 intron Zasp52 - chr2R 15791856 intron Zasp52 - chr2R 15791944 intron Zasp52 - chr2R_6_15790001 chr2R_15790001 RAL-812 545 chr2R 15801786 15801815 chr2R 15801911 15801940 6 124 1.5 3.0 2.2 1.9 154 chr2R 15801786 intron,intron Zasp52 -,tun + chr2R 15801863 intron,intron Zasp52 -,tun + chr2R 15801940 intron,intron Zasp52 -,tun + chr2R_6_15800001 chr2R_15800001 RAL-812 546 chr2R 15810381 15810406 chr2R 15810459 15810484 8 77 1.0 3.0 2.0 2.7 103 chr2R 15810381 intron,intron Zasp52 -,tun + chr2R 15810432 intron,intron Zasp52 -,tun + chr2R 15810484 intron,intron Zasp52 -,tun + chr2R_8_15810001 chr2R_15810001 RAL-812 547 chr2R 15847605 15847632 chr2R 15847682 15847709 9 74 1.0 2.0 1.5 3.6 104 chr2R 15847605 intron tun + chr2R 15847657 intron tun + chr2R 15847709 intron tun + chr2R_9_15845001 chr2R_15845001 RAL-812 548 chr2R 15873858 15873878 chr2R 15873952 15873971 4 94 2.0 0.0 1.0 2.0 113 chr2R 15873858 intron sli - chr2R 15873914 intron sli - chr2R 15873971 intron sli - chr2R_4_15870001 chr2R_15870001 RAL-812 549 chr2R 15877974 15877998 chr2R 15878059 15878083 5 85 1.0 4.0 2.5 1.4 109 chr2R 15877974 intron sli - chr2R 15878028 intron sli - chr2R 15878083 intron sli - chr2R_5_15875001 chr2R_15875001 RAL-812 550 chr2R 15999039 15999048 chr2R 15999119 15999124 5 78 0.5 4.5 2.5 1.4 85 chr2R 15999039 intron ATPCL - chr2R 15999082 intron ATPCL - chr2R 15999124 intron ATPCL - chr2R_5_15995001 chr2R_15995001 RAL-812 551 chr2R 16039219 16039252 chr2R 16039331 16039361 12 111 2.0 2.5 2.2 3.8 142 chr2R 16039219 intron SP2353 + chr2R 16039290 intron SP2353 + chr2R 16039361 intron SP2353 + chr2R_12_16035001 chr2R_16035001 RAL-812 552 chr2R 16517318 16517337 chr2R 16517398 16517403 5 78 3.5 0.0 1.8 1.8 85 chr2R 16517318 intron Sema-2a + chr2R 16517360 intron Sema-2a + chr2R 16517403 intron Sema-2a + chr2R_5_16515001 chr2R_16515001 RAL-812 553 chr2R 16596947 16596968 chr2R 16597029 16597050 6 82 2.5 3.0 2.8 1.6 103 chr2R 16596947 intron CG8303 - chr2R 16596998 intron CG8303 - chr2R 16597050 intron CG8303 - chr2R_6_16595001 chr2R_16595001 RAL-812 554 chr2R 16606619 16606646 chr2R 16606798 16606825 7 179 2.0 1.5 1.8 2.5 206 chr2R 16606619 intergenic not near genes chr2R 16606722 intergenic not near genes chr2R 16606825 intergenic not near genes chr2R_7_16605001 chr2R_16605001 RAL-812 555 chr2R 16619974 16619994 chr2R 16620055 16620073 6 81 2.0 0.5 1.2 2.7 99 chr2R 16619974 intron CG5065 + chr2R 16620024 intron CG5065 + chr2R 16620073 intron CG5065 + chr2R_6_16620001 chr2R_16620001 RAL-812 556 chr2R 16641681 16641701 chr2R 16641762 16641782 9 79 5.5 3.5 4.5 1.6 101 chr2R 16641681 5` UTR gprs + chr2R 16641732 intron gprs + chr2R 16641782 intron gprs + chr2R_9_16640001 chr2R_16640001 RAL-812 557 chr2R 16672790 16672817 chr2R 16672870 16672897 6 80 3.0 1.5 2.2 1.9 107 chr2R 16672790 exon CG34458 + chr2R 16672844 3` UTR CG34458 + chr2R 16672897 intergenic CG34458 +,CG30463 - chr2R_6_16670001 chr2R_16670001 RAL-812 558 chr2R 16716255 16716280 chr2R 16716333 16716358 5 71 0.0 1.5 0.8 2.8 103 chr2R 16716255 intron CG30463 - chr2R 16716306 intron CG30463 - chr2R 16716358 intron CG30463 - chr2R_5_16715001 chr2R_16715001 RAL-812 559 chr2R 16723934 16723946 chr2R 16724014 16724026 4 80 1.5 0.5 1.0 2.0 92 chr2R 16723934 intron CG30463 - chr2R 16723980 intron CG30463 - chr2R 16724026 intron CG30463 - chr2R_4_16720001 chr2R_16720001 RAL-812 560 chr2R 16775647 16775668 chr2R 16775909 16775932 5 264 2.5 1.0 1.8 1.8 285 chr2R 16775647 3` UTR Arp53D + chr2R 16775790 intergenic Arp53D + chr2R 16775932 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-812 561 chr2R 16784447 16784484 chr2R 16784535 16784572 10 86 2.5 2.5 2.5 2.9 125 chr2R 16784447 intron CG5522 + chr2R 16784510 intron CG5522 + chr2R 16784572 intron CG5522 + chr2R_10_16780001 chr2R_16780001 RAL-812 562 chr2R 16787109 16787129 chr2R 16787187 16787207 5 77 1.0 1.0 1.0 2.5 98 chr2R 16787109 intron CG5522 + chr2R 16787158 intron CG5522 + chr2R 16787207 intron CG5522 + chr2R_5_16785001 chr2R_16785001 RAL-812 563 chr2R 16799043 16799067 chr2R 16799123 16799147 7 78 2.5 1.5 2.0 2.3 104 chr2R 16799043 intergenic not near genes chr2R 16799095 intergenic not near genes chr2R 16799147 intergenic not near genes chr2R_7_16795001 chr2R_16795001 RAL-812 564 chr2R 16910973 16910990 chr2R 16911175 16911192 4 202 5.5 2.0 3.8 0.8 219 chr2R 16910973 intergenic not near genes chr2R 16911082 intergenic not near genes chr2R 16911192 intergenic not near genes chr2R_4_16910001 chr2R_16910001 RAL-812 565 chr2R 16912689 16912717 chr2R 16912830 16912857 14 141 3.0 3.0 3.0 3.5 168 chr2R 16912689 intergenic not near genes chr2R 16912773 intergenic not near genes chr2R 16912857 intergenic not near genes chr2R_14_16910001 chr2R_16910001 RAL-812 566 chr2R 16933504 16933513 chr2R 16933582 16933590 4 78 1.0 0.0 0.5 2.7 86 chr2R 16933504 intron Pkc53E + chr2R 16933547 intron Pkc53E + chr2R 16933590 intron Pkc53E + chr2R_4_16930001 chr2R_16930001 RAL-812 567 chr2R 16978480 16978513 chr2R 16978567 16978600 12 87 2.5 2.0 2.2 3.8 120 chr2R 16978480 intron Cbp53E + chr2R 16978540 intron Cbp53E + chr2R 16978600 intron Cbp53E + chr2R_12_16975001 chr2R_16975001 RAL-812 568 chr2R 16987056 16987071 chr2R 16987177 16987192 5 121 1.5 3.0 2.2 1.6 136 chr2R 16987056 intron Cbp53E + chr2R 16987124 intron Cbp53E + chr2R 16987192 intron Cbp53E + chr2R_5_16985001 chr2R_16985001 RAL-812 569 chr2R 17115589 17115616 chr2R 17115677 17115706 17 89 5.0 7.0 6.0 2.4 117 chr2R 17115589 intergenic not near genes chr2R 17115648 intergenic not near genes chr2R 17115706 intergenic not near genes chr2R_17_17115001 chr2R_17115001 RAL-812 570 chr2R 17147243 17147264 chr2R 17152274 17152295 jockey 9 5031 4.0 5.0 4.5 1.6 5052 chr2R 17147243 intergenic not near genes chr2R 17149769 intergenic not near genes chr2R 17152295 intergenic not near genes chr2R_9_17145001 chr2R_17145001 RAL-812 571 chr2R 17214667 17214683 chr2R 17214759 17214782 6 94 2.0 1.0 1.5 2.4 115 chr2R 17214667 intergenic not near genes chr2R 17214724 intergenic not near genes chr2R 17214782 intergenic not near genes chr2R_6_17210001 chr2R_17210001 RAL-812 572 chr2R 17221902 17221932 chr2R 17222094 17222124 9 192 2.0 0.5 1.2 4.1 222 chr2R 17221902 intron mbl + chr2R 17222013 intron mbl + chr2R 17222124 intron mbl + chr2R_9_17220001 chr2R_17220001 RAL-812 573 chr2R 17227592 17227603 chr2R 17227725 17227736 5 133 0.0 1.5 0.8 2.8 144 chr2R 17227592 intron mbl + chr2R 17227664 intron mbl + chr2R 17227736 intron mbl + chr2R_5_17225001 chr2R_17225001 RAL-812 574 chr2R 17236507 17236532 chr2R 17241711 17241736 copia 12 5203 2.5 4.5 3.5 2.7 5229 chr2R 17236507 intron mbl + chr2R 17239122 intron mbl + chr2R 17241736 intron mbl + chr2R_12_17235001 chr2R_17235001 RAL-812 575 chr2R 17331709 17331726 chr2R 17331785 17331801 5 75 1.5 3.0 2.2 1.6 92 chr2R 17331709 intron mbl + chr2R 17331755 intron mbl + chr2R 17331801 intron mbl + chr2R_5_17330001 chr2R_17330001 RAL-812 576 chr2R 17381601 17381613 chr2R 17381689 17381691 6 86 2.0 3.0 2.5 1.7 90 chr2R 17381601 intergenic not near genes chr2R 17381646 intergenic not near genes chr2R 17381691 intergenic not near genes chr2R_6_17380001 chr2R_17380001 RAL-812 577 chr2R 17384512 17384544 chr2R 17384596 17384608 18 83 6.0 1.5 3.8 3.8 96 chr2R 17384512 intergenic not near genes chr2R 17384560 intergenic not near genes chr2R 17384608 intergenic not near genes chr2R_18_17380001 chr2R_17380001 RAL-812 578 chr2R 17395292 17395314 chr2R 17395366 17395368 8 74 1.5 1.5 1.5 3.2 76 chr2R 17395292 intron Sip1 + chr2R 17395330 intron Sip1 + chr2R 17395368 intron Sip1 + chr2R_8_17395001 chr2R_17395001 RAL-812 579 chr2R 17556445 17556458 chr2R 17556530 17556543 4 85 3.0 3.5 3.2 1.0 98 chr2R 17556445 intergenic MESR4 + chr2R 17556494 intergenic MESR4 + chr2R 17556543 intergenic MESR4 +,Klp54D + chr2R_4_17555001 chr2R_17555001 RAL-812 580 chr2R 17623771 17623790 chr2R 17623901 17623912 6 128 3.5 1.5 2.5 1.7 141 chr2R 17623771 intron CG10936 - chr2R 17623842 intron CG10936 - chr2R 17623912 intron CG10936 - chr2R_6_17620001 chr2R_17620001 RAL-812 581 chr2R 17686363 17686395 chr2R 17686723 17686755 12 356 1.5 4.0 2.8 3.2 392 chr2R 17686363 intron,3` UTR HPS4 +,CG42562 + chr2R 17686559 intron HPS4 + chr2R 17686755 intron HPS4 + chr2R_12_17685001 chr2R_17685001 RAL-812 582 chr2R 17693856 17693888 chr2R 17693960 17693992 11 103 1.0 1.5 1.2 5.0 136 chr2R 17693856 intron swi2 - chr2R 17693924 intron swi2 - chr2R 17693992 intron swi2 - chr2R_11_17690001 chr2R_17690001 RAL-812 583 chr2R 17935302 17935323 chr2R 17935489 17935509 8 187 1.0 0.5 0.8 4.4 207 chr2R 17935302 intergenic not near genes chr2R 17935406 intergenic not near genes chr2R 17935509 intergenic not near genes chr2R_8_17935001 chr2R_17935001 RAL-812 584 chr2R 17948782 17948801 chr2R 17948877 17948895 9 95 2.0 2.0 2.0 3.0 113 chr2R 17948782 intergenic not near genes chr2R 17948838 intergenic not near genes chr2R 17948895 intergenic not near genes chr2R_9_17945001 chr2R_17945001 RAL-812 585 chr2R 17997155 17997194 chr2R 17997237 17997276 7 82 3.0 4.0 3.5 1.6 121 chr2R 17997155 intron dpr13 - chr2R 17997216 intron dpr13 - chr2R 17997276 intron dpr13 - chr2R_7_17995001 chr2R_17995001 RAL-812 586 chr2R 18050468 18050477 chr2R 18051069 18051071 4 596 37.5 1.0 19.2 0.2 603 chr2R 18050468 exon Muc55B - chr2R 18050770 exon Muc55B - chr2R 18051071 exon Muc55B - chr2R_4_18050001 chr2R_18050001 RAL-812 587 chr2R 18308284 18308315 chr2R 18308388 18308421 11 105 3.0 2.5 2.8 2.9 137 chr2R 18308284 intron sbb - chr2R 18308352 intron sbb - chr2R 18308421 intron sbb - chr2R_11_18305001 chr2R_18305001 RAL-812 588 chr2R 18312366 18312396 chr2R 18312465 18312496 11 99 5.5 5.0 5.2 1.8 130 chr2R 18312366 intron sbb - chr2R 18312431 intron sbb - chr2R 18312496 intron sbb - chr2R_11_18310001 chr2R_18310001 RAL-812 589 chr2R 18322317 18322337 chr2R 18322395 18322415 4 78 0.5 2.5 1.5 1.6 98 chr2R 18322317 intron sbb - chr2R 18322366 intron sbb - chr2R 18322415 intron sbb - chr2R_4_18320001 chr2R_18320001 RAL-812 590 chr2R 18358395 18358425 chr2R 18372607 18372638 roo 5 14212 1.0 2.5 1.8 1.8 14243 chr2R 18358395 intergenic not near genes chr2R 18365516 intergenic not near genes chr2R 18372638 intergenic not near genes chr2R_5_18365001 chr2R_18365001 RAL-812 591 chr2R 18376730 18376764 chr2R 18376820 18376854 10 90 1.0 1.0 1.0 5.0 124 chr2R 18376730 intergenic not near genes chr2R 18376792 intergenic not near genes chr2R 18376854 intergenic not near genes chr2R_10_18375001 chr2R_18375001 RAL-812 592 chr2R 18387589 18387605 chr2R 18387670 18387685 6 81 2.0 1.5 1.8 2.1 96 chr2R 18387589 intergenic IM3 + chr2R 18387637 intergenic IM3 + chr2R 18387685 intergenic IM3 + chr2R_6_18385001 chr2R_18385001 RAL-812 593 chr2R 18396093 18396106 chr2R 18396175 18396188 4 82 2.5 1.5 2.0 1.3 95 chr2R 18396093 intergenic not near genes chr2R 18396140 intergenic GstE10 - chr2R 18396188 intergenic GstE10 - chr2R_4_18395001 chr2R_18395001 RAL-812 594 chr2R 18402499 18402535 chr2R 18402587 18402623 15 86 3.0 3.0 3.0 3.8 124 chr2R 18402499 intergenic not near genes chr2R 18402561 intergenic not near genes chr2R 18402623 intergenic not near genes chr2R_15_18400001 chr2R_18400001 RAL-812 595 chr2R 18435838 18435863 chr2R 18435915 18435939 7 77 1.0 1.0 1.0 3.5 101 chr2R 18435838 intron CG30118 - chr2R 18435888 intron CG30118 - chr2R 18435939 intron CG30118 - chr2R_7_18435001 chr2R_18435001 RAL-812 596 chr2R 18483030 18483050 chr2R 18483268 18483268 7 235 3.0 4.5 3.8 1.5 238 chr2R 18483030 intron CG30116 - chr2R 18483149 intron CG30116 - chr2R 18483268 intron CG30116 - chr2R_7_18480001 chr2R_18480001 RAL-812 597 chr2R 18526594 18526621 chr2R 18526676 18526702 20 80 12.0 9.0 10.5 1.7 108 chr2R 18526594 intergenic CG43066 + chr2R 18526648 intergenic CG43066 + chr2R 18526702 intergenic CG43066 + chr2R_20_18525001 chr2R_18525001 RAL-812 598 chr2R 18524097 18524131 chr2R 18526775 18526809 11 2679 21.0 27.0 24.0 0.4 2712 chr2R 18524097 intron CG43066 + chr2R 18525453 3` UTR CG43066 + chr2R 18526809 intergenic CG43066 + chr2R_11_18525001 chr2R_18525001 RAL-812 599 chr2R 18575811 18575831 chr2R 18581989 18582019 3S18 9 6183 2.0 3.5 2.8 2.4 6208 chr2R 18575811 intron GEFmeso - chr2R 18578915 intron GEFmeso - chr2R 18582019 intron GEFmeso - chr2R_9_18575001 chr2R_18575001 RAL-812 600 chr2R 18590868 18590898 chr2R 18600020 18600046 roo 10 9150 3.5 3.0 3.2 2.4 9178 chr2R 18590868 intron GEFmeso - chr2R 18595457 intron GEFmeso - chr2R 18600046 intron GEFmeso - chr2R_10_18595001 chr2R_18595001 RAL-812 601 chr2R 18851664 18851674 chr2R 18852418 18852447 5 765 24.0 28.5 26.2 0.2 783 chr2R 18851664 exon CG15084 + chr2R 18852056 exon CG18190 - chr2R 18852447 exon CG18190 - chr2R_5_18850001 chr2R_18850001 RAL-812 602 chr2R 18924269 18924303 chr2R 18924349 18924383 8 80 1.0 2.5 1.8 2.9 114 chr2R 18924269 intron sano + chr2R 18924326 intron sano + chr2R 18924383 intron sano + chr2R_8_18920001 chr2R_18920001 RAL-812 603 chr2R 18926515 18926530 chr2R 18926602 18926617 4 87 0.5 2.5 1.5 1.6 102 chr2R 18926515 intron sano + chr2R 18926566 intron sano + chr2R 18926617 intron sano + chr2R_4_18925001 chr2R_18925001 RAL-812 604 chr2R 18989017 18989040 chr2R 18989095 18989118 5 78 0.0 0.5 0.2 4.2 101 chr2R 18989017 intron tn + chr2R 18989068 intron tn + chr2R 18989118 intron tn + chr2R_5_18985001 chr2R_18985001 RAL-812 605 chr2R 19214214 19214240 chr2R 19214298 19214324 11 83 4.0 6.5 5.2 1.8 110 chr2R 19214214 intron hppy + chr2R 19214269 intron hppy + chr2R 19214324 intron hppy + chr2R_11_19210001 chr2R_19210001 RAL-812 606 chr2R 19215600 19215615 chr2R 19215826 19215841 8 226 3.5 4.0 3.8 1.7 241 chr2R 19215600 intron hppy + chr2R 19215720 intron hppy + chr2R 19215841 intron hppy + chr2R_8_19215001 chr2R_19215001 RAL-812 607 chr2R 19221717 19221751 chr2R 19221795 19221823 13 77 1.5 2.0 1.8 4.6 106 chr2R 19221717 intron hppy + chr2R 19221770 intron hppy + chr2R 19221823 intron hppy + chr2R_13_19220001 chr2R_19220001 RAL-812 608 chr2R 19284436 19284467 chr2R 19284517 19284548 7 80 3.5 1.5 2.5 2.0 112 chr2R 19284436 intergenic CG10476 -,CG11906 - chr2R 19284492 intergenic CG10476 - chr2R 19284548 intergenic CG10476 - chr2R_7_19280001 chr2R_19280001 RAL-812 609 chr2R 19348670 19348684 chr2R 19349050 19349064 8 380 4.5 2.5 3.5 1.8 394 chr2R 19348670 intron Rgk1 - chr2R 19348867 intron Rgk1 - chr2R 19349064 intron Rgk1 - chr2R_8_19345001 chr2R_19345001 RAL-812 610 chr2R 19359040 19359061 chr2R 19359123 19359144 8 83 1.5 1.5 1.5 3.2 104 chr2R 19359040 intron CG11961 + chr2R 19359092 intron CG11961 + chr2R 19359144 intron CG11961 + chr2R_8_19355001 chr2R_19355001 RAL-812 611 chr2R 19485550 19485560 chr2R 19486483 19486504 8 936 21.0 29.5 25.2 0.3 954 chr2R 19485550 3` UTR,3` UTR par-1 +,TBCB - chr2R 19486027 exon TBCB - chr2R 19486504 exon TBCB - chr2R_8_19485001 chr2R_19485001 RAL-812 612 chr2R 19570134 19570169 chr2R 19570222 19570257 14 87 3.0 3.0 3.0 3.5 123 chr2R 19570134 intron sm - chr2R 19570196 intron sm - chr2R 19570257 intron sm - chr2R_14_19570001 chr2R_19570001 RAL-812 613 chr2R 19588746 19588781 chr2R 19588824 19588859 8 78 1.5 3.0 2.2 2.5 113 chr2R 19588746 intron sm - chr2R 19588802 intron sm - chr2R 19588859 intron sm - chr2R_8_19585001 chr2R_19585001 RAL-812 614 chr2R 19694731 19694756 chr2R 19694809 19694815 7 72 2.5 3.0 2.8 1.8 84 chr2R 19694731 5` UTR CR44506 + chr2R 19694773 5` UTR CR44506 + chr2R 19694815 5` UTR CR44506 + chr2R_7_19690001 chr2R_19690001 RAL-812 615 chr2R 19697940 19697961 chr2R 19698053 19698074 7 113 5.0 4.5 4.8 1.2 134 chr2R 19697940 intron Obp56a + chr2R 19698007 intron Obp56a + chr2R 19698074 exon Obp56a + chr2R_7_19695001 chr2R_19695001 RAL-812 616 chr2R 19698601 19698612 chr2R 19698687 19698697 4 86 1.0 3.0 2.0 1.3 96 chr2R 19698601 intergenic Obp56a +,Obp56b - chr2R 19698649 intergenic Obp56b -,Obp56a + chr2R 19698697 intergenic Obp56b -,Obp56a + chr2R_4_19695001 chr2R_19695001 RAL-812 617 chr2R 19776606 19776622 chr2R 19779927 19779945 jockey 5 3322 2.0 3.5 2.8 1.3 3339 chr2R 19776606 intergenic not near genes chr2R 19778276 intergenic not near genes chr2R 19779945 intergenic not near genes chr2R_5_19775001 chr2R_19775001 RAL-812 618 chr2R 19816086 19816111 chr2R 19816199 19816222 10 113 0.0 0.5 0.2 8.3 136 chr2R 19816086 3` UTR Obp56h + chr2R 19816154 3` UTR Obp56h + chr2R 19816222 intergenic Obp56h + chr2R_10_19815001 chr2R_19815001 RAL-812 619 chr2R 19847138 19847227 chr2R 19847216 19847315 14 82 0.0 0.0 0.0 14.0 177 chr2R 19847138 intergenic not near genes chr2R 19847226 intergenic not near genes chr2R 19847315 intergenic not near genes chr2R_14_19845001 chr2R_19845001 RAL-812 620 chr2R 19914849 19914877 chr2R 19922261 19922289 mdg1 10 7412 2.5 3.5 3.0 2.5 7440 chr2R 19914849 intergenic not near genes chr2R 19918569 intergenic not near genes chr2R 19922289 intergenic not near genes chr2R_10_19915001 chr2R_19915001 RAL-812 621 chr2R 19957436 19957462 chr2R 19962635 19962660 copia 6 5196 2.0 6.0 4.0 1.2 5224 chr2R 19957436 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962660 intergenic not near genes chr2R_6_19960001 chr2R_19960001 RAL-812 622 chr2R 20088001 20088016 chr2R 20088108 20088124 5 108 2.5 0.0 1.2 2.3 123 chr2R 20088001 intergenic not near genes chr2R 20088062 intergenic not near genes chr2R 20088124 intergenic not near genes chr2R_5_20085001 chr2R_20085001 RAL-812 623 chr2R 20091605 20091631 chr2R 20091687 20091722 5 84 5.5 2.5 4.0 1.0 117 chr2R 20091605 intergenic CR44633 + chr2R 20091664 intergenic CR44633 + chr2R 20091722 intergenic CR44633 + chr2R_5_20090001 chr2R_20090001 RAL-812 624 chr2R 20280810 20280837 chr2R 20281052 20281079 9 242 18.0 30.0 24.0 0.4 269 chr2R 20280810 intron CG9090 - chr2R 20280944 intron CG9090 - chr2R 20281079 5` UTR CG9090 - chr2R_9_20280001 chr2R_20280001 RAL-812 625 chr2R 20321228 20321261 chr2R 20321317 20321352 15 90 3.0 5.0 4.0 3.0 124 chr2R 20321228 intron CG8920 + chr2R 20321290 intron CG8920 + chr2R 20321352 intron CG8920 + chr2R_15_20320001 chr2R_20320001 RAL-812 626 chr2R 20326762 20326779 chr2R 20326839 20326856 9 77 4.0 2.5 3.2 2.1 94 chr2R 20326762 5` UTR MED8 - chr2R 20326809 intergenic MED8 -,CG8929 + chr2R 20326856 intergenic MED8 -,CG8929 + chr2R_9_20325001 chr2R_20325001 RAL-812 627 chr2R 20336342 20336371 chr2R 20336436 20336465 13 93 4.0 5.5 4.8 2.2 123 chr2R 20336342 intergenic not near genes chr2R 20336404 intergenic not near genes chr2R 20336465 intergenic not near genes chr2R_13_20335001 chr2R_20335001 RAL-812 628 chr2R 20395172 20395191 chr2R 20395250 20395269 6 78 0.5 1.5 1.0 3.0 97 chr2R 20395172 intergenic not near genes chr2R 20395220 intergenic not near genes chr2R 20395269 intergenic not near genes chr2R_6_20395001 chr2R_20395001 RAL-812 629 chr2R 20498898 20498927 chr2R 20498982 20499011 13 82 1.5 2.5 2.0 4.3 113 chr2R 20498898 intergenic not near genes chr2R 20498954 intergenic not near genes chr2R 20499011 intergenic not near genes chr2R_13_20495001 chr2R_20495001 RAL-812 630 chr2R 20506806 20506836 chr2R 20506896 20506925 6 90 0.0 2.0 1.0 3.0 119 chr2R 20506806 5` UTR CR44645 + chr2R 20506866 5` UTR CR44645 + chr2R 20506925 intergenic CR44645 + chr2R_6_20505001 chr2R_20505001 RAL-812 631 chr2R 20577091 20577119 chr2R 20577174 20577210 4 88 0.0 0.5 0.2 3.3 119 chr2R 20577091 intron qsm - chr2R 20577150 intron qsm - chr2R 20577210 intron qsm - chr2R_4_20575001 chr2R_20575001 RAL-812 632 chr2R 20592579 20592596 chr2R 20592657 20592673 4 77 4.5 3.0 3.8 0.8 94 chr2R 20592579 intron bl + chr2R 20592626 intron bl + chr2R 20592673 intron bl + chr2R_4_20590001 chr2R_20590001 RAL-812 633 chr2R 20668486 20668513 chr2R 20668559 20668587 9 76 1.5 3.5 2.5 2.6 101 chr2R 20668486 intron exu - chr2R 20668536 intron exu - chr2R 20668587 3` UTR exu - chr2R_9_20665001 chr2R_20665001 RAL-812 634 chr2R 20725049 20725075 chr2R 20725171 20725197 13 120 5.5 5.0 5.2 2.1 148 chr2R 20725049 intron dpr + chr2R 20725123 intron dpr + chr2R 20725197 intron dpr + chr2R_13_20725001 chr2R_20725001 RAL-812 635 chr2R 20739443 20739477 chr2R 20744211 20744245 F-element 12 4767 4.5 3.0 3.8 2.5 4802 chr2R 20739443 intron dpr + chr2R 20741844 intron dpr + chr2R 20744245 intron dpr + chr2R_12_20740001 chr2R_20740001 RAL-812 636 chr2R 20783319 20783332 chr2R 20788091 20788104 F-element 4 4772 0.5 0.5 0.5 2.7 4785 chr2R 20783319 intergenic not near genes chr2R 20785712 intergenic not near genes chr2R 20788104 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-812 637 chr2R 20812254 20812279 chr2R 20812334 20812359 11 78 7.0 5.5 6.2 1.5 105 chr2R 20812254 intergenic not near genes chr2R 20812306 intergenic not near genes chr2R 20812359 intergenic not near genes chr2R_11_20810001 chr2R_20810001 RAL-812 638 chr2R 20926892 20926913 chr2R 20927161 20927182 11 268 3.0 3.0 3.0 2.8 290 chr2R 20926892 intron Rx + chr2R 20927037 intron Rx + chr2R 20927182 intron Rx + chr2R_11_20925001 chr2R_20925001 RAL-812 639 chr2R 21040873 21040893 chr2R 21040943 21040969 8 75 1.0 3.0 2.0 2.7 96 chr2R 21040873 intergenic not near genes chr2R 21040921 intergenic not near genes chr2R 21040969 intergenic not near genes chr2R_8_21040001 chr2R_21040001 RAL-812 640 chr2R 21241767 21241799 chr2R 21242611 21242643 4 844 0.0 3.0 1.5 1.6 876 chr2R 21241767 intron ASPP - chr2R 21242205 intron ASPP - chr2R 21242643 intron ASPP - chr2R_4_21240001 chr2R_21240001 RAL-812 641 chr2R 21505765 21505787 chr2R 21505846 21505867 9 81 3.5 2.0 2.8 2.4 102 chr2R 21505765 intron MESK2 + chr2R 21505816 intron MESK2 + chr2R 21505867 intron MESK2 + chr2R_9_21505001 chr2R_21505001 RAL-812 642 chr2R 21721579 21721603 chr2R 21721667 21721685 12 86 1.5 3.0 2.2 3.8 106 chr2R 21721579 intron LBR + chr2R 21721632 intron LBR + chr2R 21721685 intron LBR + chr2R_12_21720001 chr2R_21720001 RAL-812 643 chr2R 21738277 21738311 chr2R 21747437 21747447 roo 9 9153 3.5 2.5 3.0 2.2 9170 chr2R 21738277 intergenic not near genes chr2R 21742862 intergenic not near genes chr2R 21747447 intergenic not near genes chr2R_9_21740001 chr2R_21740001 RAL-812 644 chr2R 21753082 21753115 chr2R 21753567 21753600 roo 9 484 1.0 2.5 1.8 3.2 518 chr2R 21753082 intergenic not near genes chr2R 21753341 intergenic not near genes chr2R 21753600 intergenic not near genes chr2R_9_21750001 chr2R_21750001 RAL-812 645 chr2R 21759564 21759592 chr2R 21759651 21759678 6 82 1.5 1.0 1.2 2.7 114 chr2R 21759564 intergenic not near genes chr2R 21759621 intergenic not near genes chr2R 21759678 intergenic not near genes chr2R_6_21755001 chr2R_21755001 RAL-812 646 chr2R 21777268 21777417 chr2R 21777350 21777500 12 81 3.0 1.0 2.0 4.0 232 chr2R 21777268 intergenic not near genes chr2R 21777384 intergenic not near genes chr2R 21777500 intergenic not near genes chr2R_12_21775001 chr2R_21775001 RAL-812 647 chr2R 21796458 21796487 chr2R 21796542 21796571 6 83 0.5 2.0 1.2 2.7 113 chr2R 21796458 5` UTR CG34204 + chr2R 21796514 5` UTR CG34204 + chr2R 21796571 exon CG34204 + chr2R_6_21795001 chr2R_21795001 RAL-812 648 chr2R 21906270 21906295 chr2R 21906371 21906396 5 101 2.5 3.5 3.0 1.2 126 chr2R 21906270 intron Fili + chr2R 21906333 intron Fili + chr2R 21906396 intron Fili + chr2R_5_21905001 chr2R_21905001 RAL-812 649 chr2R 21912746 21912770 chr2R 21912827 21912850 4 81 4.0 1.0 2.5 1.1 104 chr2R 21912746 intron Fili + chr2R 21912798 intron Fili + chr2R 21912850 intron Fili + chr2R_4_21910001 chr2R_21910001 RAL-812 650 chr2R 21919870 21919903 chr2R 21919958 21919991 5 87 3.0 1.0 2.0 1.7 121 chr2R 21919870 intron Fili + chr2R 21919930 intron Fili + chr2R 21919991 intron Fili + chr2R_5_21915001 chr2R_21915001 RAL-812 651 chr2R 21965325 21965333 chr2R 21965429 21965456 4 122 4.0 3.0 3.5 0.9 131 chr2R 21965325 intron ppk9 + chr2R 21965390 intron ppk9 + chr2R 21965456 intron ppk9 + chr2R_4_21965001 chr2R_21965001 RAL-812 652 chr2R 21985541 21985563 chr2R 21985622 21985644 9 81 3.5 2.5 3.0 2.2 103 chr2R 21985541 intergenic CG30401 - chr2R 21985592 intergenic CG30401 - chr2R 21985644 3` UTR CG30401 - chr2R_9_21985001 chr2R_21985001 RAL-812 653 chr2R 22001728 22001741 chr2R 22001917 22001947 4 200 0.5 3.0 1.8 1.4 219 chr2R 22001728 intron CG34370 - chr2R 22001838 intron CG34370 - chr2R 22001947 intron CG34370 - chr2R_4_22000001 chr2R_22000001 RAL-812 654 chr2R 22006638 22006673 chr2R 22006714 22006748 9 74 3.0 3.0 3.0 2.2 110 chr2R 22006638 intron CG34370 - chr2R 22006693 intron CG34370 - chr2R 22006748 intron CG34370 - chr2R_9_22005001 chr2R_22005001 RAL-812 655 chr2R 22135437 22135455 chr2R 22135545 22135564 7 108 4.5 1.5 3.0 1.8 127 chr2R 22135437 intergenic not near genes chr2R 22135500 intergenic not near genes chr2R 22135564 intergenic not near genes chr2R_7_22135001 chr2R_22135001 RAL-812 656 chr2R 22272079 22272096 chr2R 22272181 22272198 7 102 4.5 5.0 4.8 1.2 119 chr2R 22272079 intron dve + chr2R 22272138 intron dve + chr2R 22272198 intron dve + chr2R_7_22270001 chr2R_22270001 RAL-812 657 chr2R 22279541 22279574 chr2R 22279630 22279663 14 88 5.0 3.5 4.2 2.7 122 chr2R 22279541 intron dve + chr2R 22279602 intron dve + chr2R 22279663 intron dve + chr2R_14_22275001 chr2R_22275001 RAL-812 658 chr2R 22349701 22349725 chr2R 22351483 22351509 jockey 7 1783 5.5 6.0 5.8 1.0 1808 chr2R 22349701 intron Liprin-gamma - chr2R 22350605 intron Liprin-gamma - chr2R 22351509 intron Liprin-gamma - chr2R_7_22350001 chr2R_22350001 RAL-812 659 chr2R 22360378 22360391 chr2R 22360811 22360823 jockey 5 433 7.0 2.5 4.8 0.9 445 chr2R 22360378 intron Liprin-gamma - chr2R 22360600 intron Liprin-gamma - chr2R 22360823 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-812 660 chr2R 22525757 22525785 chr2R 22529306 22529331 jockey 10 3553 1.5 4.0 2.8 2.6 3574 chr2R 22525757 intron px - chr2R 22527544 intron px - chr2R 22529331 intron px - chr2R_10_22525001 chr2R_22525001 RAL-812 661 chr2R 22541862 22541883 chr2R 22541960 22541983 6 99 3.0 0.5 1.8 2.1 121 chr2R 22541862 intron px - chr2R 22541922 intron px - chr2R 22541983 intron px - chr2R_6_22540001 chr2R_22540001 RAL-812 662 chr2R 22834768 22834801 chr2R 22834878 22834913 6 111 0.5 0.5 0.5 4.0 145 chr2R 22834768 intron CG12490 + chr2R 22834840 intron CG12490 + chr2R 22834913 intron CG12490 + chr2R_6_22830001 chr2R_22830001 RAL-812 663 chr2R 22873632 22873640 chr2R 22873708 22873714 5 75 3.5 1.0 2.2 1.6 82 chr2R 22873632 exon CG13532 + chr2R 22873673 intron CG13532 + chr2R 22873714 intron CG13532 + chr2R_5_22870001 chr2R_22870001 RAL-812 664 chr2R 22907408 22907429 chr2R 22907496 22907515 7 89 6.5 2.5 4.5 1.3 107 chr2R 22907408 intron nahoda + chr2R 22907462 intron nahoda + chr2R 22907515 intron nahoda + chr2R_7_22905001 chr2R_22905001 RAL-812 665 chr2R 22951719 22951862 chr2R 22951859 22951948 8 120 0.0 0.0 0.0 8.0 229 chr2R 22951719 3` UTR CR32835 - chr2R 22951834 3` UTR CR32835 - chr2R 22951948 intron CR32835 - chr2R_8_22950001 chr2R_22950001 RAL-812 666 chr2R 22968138 22968162 chr2R 22968227 22968251 4 89 0.5 4.0 2.2 1.2 113 chr2R 22968138 intergenic not near genes chr2R 22968194 intergenic not near genes chr2R 22968251 intergenic not near genes chr2R_4_22965001 chr2R_22965001 RAL-812 667 chr2R 23045334 23045356 chr2R 23045548 23045570 10 214 3.0 1.5 2.2 3.1 236 chr2R 23045334 intron twi + chr2R 23045452 intron twi + chr2R 23045570 intron twi + chr2R_10_23045001 chr2R_23045001 RAL-812 668 chr2R 23052652 23052686 chr2R 23052728 23052762 9 76 2.0 1.5 1.8 3.2 110 chr2R 23052652 intergenic not near genes chr2R 23052707 intergenic not near genes chr2R 23052762 intergenic not near genes chr2R_9_23050001 chr2R_23050001 RAL-812 669 chr2R 23061777 23061787 chr2R 23061871 23061881 5 94 2.5 7.0 4.8 0.9 104 chr2R 23061777 3` UTR l(2)06496 - chr2R 23061829 3` UTR l(2)06496 - chr2R 23061881 3` UTR l(2)06496 - chr2R_5_23060001 chr2R_23060001 RAL-812 670 chr2R 23110911 23110941 chr2R 23111487 23111517 12 576 4.0 3.5 3.8 2.5 606 chr2R 23110911 3` UTR CR44781 - chr2R 23111214 intergenic CR44781 - chr2R 23111517 intergenic CR44781 - chr2R_12_23110001 chr2R_23110001 RAL-812 671 chr2R 23122674 23122683 chr2R 23122759 23122768 4 85 2.5 2.0 2.2 1.2 94 chr2R 23122674 intergenic not near genes chr2R 23122721 intergenic not near genes chr2R 23122768 intergenic not near genes chr2R_4_23120001 chr2R_23120001 RAL-812 672 chr2R 23175045 23175068 chr2R 23175122 23175144 5 76 3.0 3.0 3.0 1.2 99 chr2R 23175045 intron CG34371 - chr2R 23175094 intron CG34371 - chr2R 23175144 intron CG34371 - chr2R_5_23175001 chr2R_23175001 RAL-812 673 chr2R 23185275 23185303 chr2R 23185361 23185377 5 83 0.0 1.0 0.5 3.3 102 chr2R 23185275 intron,3` UTR CG34371 -,CG13539 + chr2R 23185326 intron CG34371 - chr2R 23185377 intron CG34371 - chr2R_5_23185001 chr2R_23185001 RAL-812 674 chr2R 23194198 23194207 chr2R 23194280 23194289 4 82 0.0 0.0 0.0 4.0 91 chr2R 23194198 intron CG34371 - chr2R 23194244 intron CG34371 - chr2R 23194289 intron CG34371 - chr2R_4_23190001 chr2R_23190001 RAL-812 675 chr2R 23253841 23253865 chr2R 23253918 23253941 6 77 2.5 0.0 1.2 2.7 100 chr2R 23253841 intergenic not near genes chr2R 23253891 intergenic not near genes chr2R 23253941 intergenic not near genes chr2R_6_23250001 chr2R_23250001 RAL-812 676 chr2R 23287825 23287850 chr2R 23287903 23287928 8 78 3.5 3.5 3.5 1.8 103 chr2R 23287825 intergenic not near genes chr2R 23287876 intergenic not near genes chr2R 23287928 intergenic not near genes chr2R_8_23285001 chr2R_23285001 RAL-812 677 chr2R 23356274 23356309 chr2R 23356363 23356398 16 87 1.5 3.5 2.5 4.6 124 chr2R 23356274 3` UTR Rpi + chr2R 23356336 3` UTR Rpi + chr2R 23356398 3` UTR,3` UTR Rpi +,CG3500 - chr2R_16_23355001 chr2R_23355001 RAL-812 678 chr2R 23448681 23448701 chr2R 23448936 23448956 9 255 0.5 4.0 2.2 2.8 275 chr2R 23448681 intron CG43795 + chr2R 23448818 intron CG43795 + chr2R 23448956 intron CG43795 + chr2R_9_23445001 chr2R_23445001 RAL-812 679 chr2R 23508921 23508941 chr2R 23509038 23509058 4 117 3.5 1.5 2.5 1.1 137 chr2R 23508921 intergenic not near genes chr2R 23508990 intergenic not near genes chr2R 23509058 intergenic not near genes chr2R_4_23505001 chr2R_23505001 RAL-812 680 chr2R 23784475 23784501 chr2R 23784553 23784579 6 78 3.5 3.5 3.5 1.3 104 chr2R 23784475 intron CG9850 - chr2R 23784527 intron CG9850 - chr2R 23784579 intron CG9850 - chr2R_6_23780001 chr2R_23780001 RAL-812 681 chr2R 23994158 23994169 chr2R 23994234 23994245 8 75 3.5 4.0 3.8 1.7 87 chr2R 23994158 intron CG3860 - chr2R 23994202 intron CG3860 - chr2R 23994245 intron CG3860 - chr2R_8_23990001 chr2R_23990001 RAL-812 682 chr2R 24031382 24031414 chr2R 24031465 24031498 14 83 1.5 3.5 2.5 4.0 116 chr2R 24031382 5` UTR CG30172 - chr2R 24031440 intergenic CG30172 -,Chi - chr2R 24031498 intergenic Chi -,CG30172 - chr2R_14_24030001 chr2R_24030001 RAL-812 683 chr2R 24045873 24045903 chr2R 24045956 24045987 10 82 4.0 3.0 3.5 2.2 114 chr2R 24045873 intron tsr - chr2R 24045930 intron tsr - chr2R 24045987 intron tsr - chr2R_10_24045001 chr2R_24045001 RAL-812 684 chr2R 24077937 24077958 chr2R 24078013 24078034 4 76 3.0 2.5 2.8 1.1 97 chr2R 24077937 3` UTR Mlp60A + chr2R 24077986 3` UTR Mlp60A + chr2R 24078034 3` UTR Mlp60A + chr2R_4_24075001 chr2R_24075001 RAL-812 685 chr2R 24147077 24147094 chr2R 24154654 24154672 412 5 7577 4.0 11.5 7.8 0.6 7595 chr2R 24147077 intron Dat + chr2R 24150874 intron Dat + chr2R 24154672 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-812 686 chr2R 24303887 24303917 chr2R 24303971 24304001 14 84 3.0 0.0 1.5 5.6 114 chr2R 24303887 intergenic not near genes chr2R 24303944 intergenic not near genes chr2R 24304001 intergenic not near genes chr2R_14_24300001 chr2R_24300001 RAL-812 687 chr2R 24353428 24353462 chr2R 24361790 24361824 roo 11 8362 3.0 5.0 4.0 2.2 8396 chr2R 24353428 intron,intron bs +,CR44811 - chr2R 24357626 intron,intron bs +,CR44811 - chr2R 24361824 intron,intron bs +,CR44811 - chr2R_11_24355001 chr2R_24355001 RAL-812 688 chr2R 24590113 24590139 chr2R 24590204 24590231 12 91 3.5 3.0 3.2 2.9 118 chr2R 24590113 intron pio + chr2R 24590172 intron pio + chr2R 24590231 intron pio + chr2R_12_24590001 chr2R_24590001 RAL-812 689 chr2R 24591517 24591547 chr2R 24591593 24591623 16 76 1.5 3.0 2.2 5.0 106 chr2R 24591517 intron pio + chr2R 24591570 intron pio + chr2R 24591623 intron pio + chr2R_16_24590001 chr2R_24590001 RAL-812 690 chr2R 24647591 24647617 chr2R 24655148 24655174 412 6 7556 5.0 6.0 5.5 0.9 7583 chr2R 24647591 intergenic not near genes chr2R 24651382 intergenic not near genes chr2R 24655174 intergenic not near genes chr2R_6_24650001 chr2R_24650001 RAL-812 691 chr2R 24737148 24737175 chr2R 24737268 24737275 12 116 4.5 2.0 3.2 2.9 127 chr2R 24737148 intergenic Mid1 - chr2R 24737212 intergenic not near genes chr2R 24737275 intergenic not near genes chr2R_12_24735001 chr2R_24735001 RAL-812 692 chr2R 24763609 24763638 chr2R 24765585 24765607 G2 11 1970 5.0 4.0 4.5 2.0 1998 chr2R 24763609 exon CG3894 + chr2R 24764608 intron CG3894 + chr2R 24765607 exon CG3894 + chr2R_11_24760001 chr2R_24760001 RAL-812 693 chr2R 24844343 24844376 chr2R 24844429 24844461 14 86 2.0 4.0 3.0 3.5 118 chr2R 24844343 intergenic not near genes chr2R 24844402 intergenic not near genes chr2R 24844461 intergenic not near genes chr2R_14_24840001 chr2R_24840001 RAL-812 694 chr2R 24984000 24984025 chr2R 24984112 24984138 6 112 6.5 5.0 5.8 0.9 138 chr2R 24984000 intron emp - chr2R 24984069 intron emp - chr2R 24984138 intron emp - chr2R_6_24980001 chr2R_24980001 RAL-812 695 chr2R 25004893 25004922 chr2R 25004971 25005000 13 75 4.5 3.0 3.8 2.7 107 chr2R 25004893 intron zip - chr2R 25004946 intron zip - chr2R 25005000 intron zip - chr2R_13_25000001 chr2R_25000001 RAL-812 696 chr2R 25014549 25014576 chr2R 25014623 25014652 8 74 1.0 3.5 2.2 2.5 103 chr2R 25014549 intron uzip + chr2R 25014600 intron uzip + chr2R 25014652 intron uzip + chr2R_8_25010001 chr2R_25010001 RAL-812 697 chr2R 25018342 25018374 chr2R 25018443 25018475 13 101 5.0 5.0 5.0 2.2 133 chr2R 25018342 intron uzip + chr2R 25018408 intron uzip + chr2R 25018475 intron uzip + chr2R_13_25015001 chr2R_25015001 RAL-812 698 chr2R 25022639 25022647 chr2R 25022723 25022731 4 84 2.5 2.5 2.5 1.1 92 chr2R 25022639 intron uzip + chr2R 25022685 intron uzip + chr2R 25022731 intron uzip + chr2R_4_25020001 chr2R_25020001 RAL-812 699 chr2R 25038370 25038404 chr2R 25038917 25038951 6 547 21.0 17.5 19.2 0.3 581 chr2R 25038370 intron Nplp1 + chr2R 25038660 intron Nplp1 + chr2R 25038951 intron Nplp1 + chr2R_6_25035001 chr2R_25035001 RAL-812 700 chr2R 25101276 25101309 chr2R 25101378 25101411 7 102 2.5 1.5 2.0 2.3 135 chr2R 25101276 intron lov - chr2R 25101344 intron lov - chr2R 25101411 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-812 701 chr2R 25108327 25108359 chr2R 25108458 25108490 7 129 2.0 6.5 4.2 1.3 163 chr2R 25108327 intron lov - chr2R 25108408 intron lov - chr2R 25108490 intron lov - chr2R_7_25105001 chr2R_25105001 RAL-812 702 chr2R 25141648 25141683 chr2R 25159338 25159373 roo 6 17690 3.0 3.0 3.0 1.5 17725 chr2R 25141648 intergenic not near genes chr2R 25150510 intergenic not near genes chr2R 25159373 intergenic not near genes chr2R_6_25150001 chr2R_25150001 RAL-812 703 chr3L 30843 30857 chr3L 30993 31016 8 159 2.5 1.5 2.0 2.7 173 chr3L 30843 intergenic not near genes chr3L 30930 intergenic not near genes chr3L 31016 intergenic not near genes chr3L_8_30001 chr3L_30001 RAL-812 704 chr3L 68982 69014 chr3L 69069 69101 10 87 0.5 3.5 2.0 3.3 119 chr3L 68982 3` UTR Lsp1gamma + chr3L 69042 intergenic Lsp1gamma +,CR44510 + chr3L 69101 intergenic CR44510 +,Lsp1gamma + chr3L_10_65001 chr3L_65001 RAL-812 705 chr3L 93790 93823 chr3L 93871 93882 10 76 4.0 6.5 5.2 1.6 92 chr3L 93790 intergenic not near genes chr3L 93836 intergenic not near genes chr3L 93882 intergenic not near genes chr3L_10_90001 chr3L_90001 RAL-812 706 chr3L 106004 106025 chr3L 106133 106150 6 128 1.5 1.5 1.5 2.4 146 chr3L 106004 intergenic not near genes chr3L 106077 intergenic not near genes chr3L 106150 intergenic not near genes chr3L_6_105001 chr3L_105001 RAL-812 707 chr3L 110223 110238 chr3L 119390 119405 roo 5 9167 3.0 1.0 2.0 1.7 9182 chr3L 110223 intergenic not near genes chr3L 114814 intergenic not near genes chr3L 119405 intergenic not near genes chr3L_5_110001 chr3L_110001 RAL-812 708 chr3L 402698 402718 chr3L 409746 409771 297 8 7052 3.5 4.5 4.0 1.6 7073 chr3L 402698 intergenic not near genes chr3L 406234 intergenic not near genes chr3L 409771 intergenic not near genes chr3L_8_405001 chr3L_405001 RAL-812 709 chr3L 416134 416165 chr3L 416222 416253 16 87 2.5 0.5 1.5 6.4 119 chr3L 416134 intergenic not near genes chr3L 416194 intergenic not near genes chr3L 416253 intergenic not near genes chr3L_16_415001 chr3L_415001 RAL-812 710 chr3L 456213 456236 chr3L 456292 456315 6 78 3.5 3.0 3.2 1.4 102 chr3L 456213 intron klar - chr3L 456264 intron klar - chr3L 456315 intron klar - chr3L_6_455001 chr3L_455001 RAL-812 711 chr3L 459982 460000 chr3L 460059 460077 8 77 3.5 6.5 5.0 1.3 95 chr3L 459982 intron klar - chr3L 460030 intron klar - chr3L 460077 intron klar - chr3L_8_460001 chr3L_460001 RAL-812 712 chr3L 514278 514303 chr3L 514355 514380 15 77 2.5 6.0 4.2 2.9 102 chr3L 514278 intron klar - chr3L 514329 intron klar - chr3L 514380 intron klar - chr3L_15_510001 chr3L_510001 RAL-812 713 chr3L 563970 563999 chr3L 564149 564178 12 178 6.0 4.0 5.0 2.0 208 chr3L 563970 intron hipk + chr3L 564074 intron hipk + chr3L 564178 intron hipk + chr3L_12_560001 chr3L_560001 RAL-812 714 chr3L 642470 642501 chr3L 642561 642592 8 90 3.0 6.0 4.5 1.5 122 chr3L 642470 5` UTR CR43334 + chr3L 642531 5` UTR CR43334 + chr3L 642592 5` UTR CR43334 + chr3L_8_640001 chr3L_640001 RAL-812 715 chr3L 651386 651417 chr3L 651474 651505 10 88 3.0 0.5 1.8 3.6 119 chr3L 651386 intergenic Gale +,CG3402 - chr3L 651446 intergenic CG3402 -,Gale + chr3L 651505 intergenic CG3402 -,Gale + chr3L_10_650001 chr3L_650001 RAL-812 716 chr3L 671727 671740 chr3L 671818 671831 5 90 4.5 2.0 3.2 1.2 104 chr3L 671727 intergenic not near genes chr3L 671779 intergenic not near genes chr3L 671831 intergenic not near genes chr3L_5_670001 chr3L_670001 RAL-812 717 chr3L 705897 705935 chr3L 705993 706031 9 96 2.0 1.0 1.5 3.6 134 chr3L 705897 intergenic CG13895 -,CR44514 + chr3L 705964 3` UTR CG13895 - chr3L 706031 3` UTR CG13895 - chr3L_9_705001 chr3L_705001 RAL-812 718 chr3L 712470 712501 chr3L 712715 712747 9 245 2.5 6.0 4.2 1.7 277 chr3L 712470 intergenic not near genes chr3L 712608 intergenic not near genes chr3L 712747 intergenic not near genes chr3L_9_710001 chr3L_710001 RAL-812 719 chr3L 713064 713096 chr3L 713154 713161 11 87 3.5 0.5 2.0 3.7 97 chr3L 713064 intergenic not near genes chr3L 713112 intergenic not near genes chr3L 713161 intergenic not near genes chr3L_11_710001 chr3L_710001 RAL-812 720 chr3L 813919 813937 chr3L 814017 814049 8 108 10.0 4.0 7.0 1.0 130 chr3L 813919 5` UTR CR44537 + chr3L 813984 5` UTR CR44537 + chr3L 814049 5` UTR CR44537 + chr3L_8_810001 chr3L_810001 RAL-812 721 chr3L 858006 858031 chr3L 866479 866500 Tirant 5 8471 3.5 2.0 2.8 1.3 8494 chr3L 858006 intergenic not near genes chr3L 862253 intergenic not near genes chr3L 866500 5` UTR CG12502 + chr3L_5_860001 chr3L_860001 RAL-812 722 chr3L 922172 922179 chr3L 922249 922256 5 77 4.0 1.5 2.8 1.3 84 chr3L 922172 intron Glut1 + chr3L 922214 intron Glut1 + chr3L 922256 intron Glut1 + chr3L_5_920001 chr3L_920001 RAL-812 723 chr3L 925174 925197 chr3L 932600 932623 mdg1 11 7426 5.5 2.5 4.0 2.2 7449 chr3L 925174 intron Glut1 + chr3L 928898 intron Glut1 + chr3L 932623 intron Glut1 + chr3L_11_925001 chr3L_925001 RAL-812 724 chr3L 939774 939800 chr3L 940895 940918 jockey 9 1120 2.0 0.5 1.2 4.1 1144 chr3L 939774 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940918 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-812 725 chr3L 1015027 1015045 chr3L 1015139 1015144 7 110 12.5 3.0 7.8 0.8 117 chr3L 1015027 intron trio - chr3L 1015086 intron trio - chr3L 1015144 intron trio - chr3L_7_1015001 chr3L_1015001 RAL-812 726 chr3L 1021374 1021405 chr3L 1021454 1021485 16 75 5.5 5.5 5.5 2.5 111 chr3L 1021374 intron trio - chr3L 1021430 intron trio - chr3L 1021485 intron trio - chr3L_16_1020001 chr3L_1020001 RAL-812 727 chr3L 1055800 1055832 chr3L 1056199 1056231 10 396 2.5 1.0 1.8 3.6 431 chr3L 1055800 intron bab1 - chr3L 1056016 intron bab1 - chr3L 1056231 intron bab1 - chr3L_10_1055001 chr3L_1055001 RAL-812 728 chr3L 1103992 1104014 chr3L 1104183 1104205 7 190 3.5 3.5 3.5 1.6 213 chr3L 1103992 intergenic not near genes chr3L 1104098 intergenic not near genes chr3L 1104205 intergenic not near genes chr3L_7_1100001 chr3L_1100001 RAL-812 729 chr3L 1109639 1109664 chr3L 1109726 1109752 12 87 5.0 2.0 3.5 2.7 113 chr3L 1109639 intergenic not near genes chr3L 1109696 intergenic not near genes chr3L 1109752 intergenic not near genes chr3L_12_1105001 chr3L_1105001 RAL-812 730 chr3L 1154131 1154155 chr3L 1163281 1163305 roo 4 9150 4.0 0.5 2.2 1.2 9174 chr3L 1154131 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163305 intron bab2 - chr3L_4_1155001 chr3L_1155001 RAL-812 731 chr3L 1219598 1219621 chr3L 1227328 1227354 412 4 7732 1.5 5.0 3.2 1.0 7756 chr3L 1219598 intron mwh + chr3L 1223476 intron mwh + chr3L 1227354 intron mwh + chr3L_4_1220001 chr3L_1220001 RAL-812 732 chr3L 1415779 1415804 chr3L 1415861 1415886 8 78 0.0 4.0 2.0 2.7 107 chr3L 1415779 intron Ptp61F - chr3L 1415832 intron Ptp61F - chr3L 1415886 intron Ptp61F - chr3L_8_1415001 chr3L_1415001 RAL-812 733 chr3L 1501996 1502020 chr3L 1502076 1502080 12 77 4.0 2.0 3.0 3.0 84 chr3L 1501996 intron pUf68 - chr3L 1502038 intron pUf68 - chr3L 1502080 intron pUf68 - chr3L_12_1500001 chr3L_1500001 RAL-812 734 chr3L 1505997 1506028 chr3L 1513594 1513623 17.6 8 7597 8.0 4.0 6.0 1.1 7626 chr3L 1505997 intron,intron Psa +,cue - chr3L 1509810 intron,intron Psa +,cue - chr3L 1513623 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 RAL-812 735 chr3L 1728519 1728553 chr3L 1728604 1728638 9 84 2.5 3.0 2.8 2.4 119 chr3L 1728519 intron drpr - chr3L 1728578 intron drpr - chr3L 1728638 intron drpr - chr3L_9_1725001 chr3L_1725001 RAL-812 736 chr3L 1754690 1754721 chr3L 1754808 1754822 11 117 2.5 4.0 3.2 2.6 132 chr3L 1754690 intron Cht2 - chr3L 1754756 intron Cht2 - chr3L 1754822 intron Cht2 - chr3L_11_1750001 chr3L_1750001 RAL-812 737 chr3L 2139205 2139224 chr3L 2139286 2139305 8 81 3.0 3.0 3.0 2.0 100 chr3L 2139205 intron zormin - chr3L 2139255 intron zormin - chr3L 2139305 intron zormin - chr3L_8_2135001 chr3L_2135001 RAL-812 738 chr3L 2168773 2168803 chr3L 2168864 2168893 14 90 5.0 2.5 3.8 2.9 120 chr3L 2168773 exon CG15879 - chr3L 2168833 intron CG15879 - chr3L 2168893 intron CG15879 - chr3L_14_2165001 chr3L_2165001 RAL-812 739 chr3L 2308010 2308032 chr3L 2308116 2308138 7 106 3.5 3.0 3.2 1.7 128 chr3L 2308010 intergenic not near genes chr3L 2308074 intergenic not near genes chr3L 2308138 intergenic not near genes chr3L_7_2305001 chr3L_2305001 RAL-812 740 chr3L 2411336 2411341 chr3L 2411416 2411421 4 80 3.5 2.5 3.0 1.0 85 chr3L 2411336 intron CG45186 + chr3L 2411378 intron CG45186 + chr3L 2411421 intron CG45186 + chr3L_4_2410001 chr3L_2410001 RAL-812 741 chr3L 2414474 2414490 chr3L 2414627 2414644 4 154 1.5 3.0 2.2 1.2 170 chr3L 2414474 intron CG45186 + chr3L 2414559 intron CG45186 + chr3L 2414644 intron CG45186 + chr3L_4_2410001 chr3L_2410001 RAL-812 742 chr3L 2447503 2447535 chr3L 2456659 2456690 roo 12 9155 3.5 3.0 3.2 2.9 9187 chr3L 2447503 intron CG45186 + chr3L 2452096 intron CG45186 + chr3L 2456690 intron CG45186 + chr3L_12_2450001 chr3L_2450001 RAL-812 743 chr3L 2533652 2533671 chr3L 2533734 2533753 4 81 5.0 8.0 6.5 0.5 101 chr3L 2533652 intron Spn - chr3L 2533702 intron Spn - chr3L 2533753 intron Spn - chr3L_4_2530001 chr3L_2530001 RAL-812 744 chr3L 2554058 2554090 chr3L 2554136 2554168 8 78 3.5 0.0 1.8 2.9 110 chr3L 2554058 5` UTR Spn - chr3L 2554113 5` UTR Spn - chr3L 2554168 5` UTR Spn - chr3L_8_2550001 chr3L_2550001 RAL-812 745 chr3L 2561532 2561555 chr3L 2561609 2561630 7 76 1.0 1.0 1.0 3.5 98 chr3L 2561532 intron msn - chr3L 2561581 intron msn - chr3L 2561630 intron msn - chr3L_7_2560001 chr3L_2560001 RAL-812 746 chr3L 2581898 2581915 chr3L 2581992 2582009 5 94 1.0 1.0 1.0 2.5 111 chr3L 2581898 intron msn - chr3L 2581954 intron msn - chr3L 2582009 intron msn - chr3L_5_2580001 chr3L_2580001 RAL-812 747 chr3L 2683948 2683975 chr3L 2684024 2684051 6 76 0.5 1.0 0.8 3.3 103 chr3L 2683948 intron Fife - chr3L 2684000 intron Fife - chr3L 2684051 intron Fife - chr3L_6_2680001 chr3L_2680001 RAL-812 748 chr3L 2716198 2716211 chr3L 2716277 2716290 6 79 5.5 2.5 4.0 1.2 92 chr3L 2716198 intergenic not near genes chr3L 2716244 intergenic not near genes chr3L 2716290 intergenic not near genes chr3L_6_2715001 chr3L_2715001 RAL-812 749 chr3L 2726060 2726082 chr3L 2726369 2726391 5 308 5.0 1.5 3.2 1.2 331 chr3L 2726060 intron Mrtf - chr3L 2726226 intron Mrtf - chr3L 2726391 intron Mrtf - chr3L_5_2725001 chr3L_2725001 RAL-812 750 chr3L 2751450 2751463 chr3L 2755745 2755757 F-element 6 4295 3.5 4.0 3.8 1.2 4307 chr3L 2751450 intron Mrtf - chr3L 2753604 intron Mrtf - chr3L 2755757 intron Mrtf - chr3L_6_2750001 chr3L_2750001 RAL-812 751 chr3L 2762888 2762915 chr3L 2763036 2763045 5 134 8.5 14.0 11.2 0.4 157 chr3L 2762888 intron Mrtf - chr3L 2762966 intron Mrtf - chr3L 2763045 intron Mrtf - chr3L_5_2760001 chr3L_2760001 RAL-812 752 chr3L 2795724 2795748 chr3L 2795847 2795871 5 123 1.5 2.0 1.8 1.8 147 chr3L 2795724 intron CG43444 - chr3L 2795798 intron CG43444 - chr3L 2795871 intron CG43444 - chr3L_5_2795001 chr3L_2795001 RAL-812 753 chr3L 3057254 3057276 chr3L 3057398 3057420 8 144 5.0 3.0 4.0 1.6 166 chr3L 3057254 exon CG32486 - chr3L 3057337 intron CG32486 - chr3L 3057420 intron CG32486 - chr3L_8_3055001 chr3L_3055001 RAL-812 754 chr3L 3254087 3254106 chr3L 3254178 3254197 5 91 0.5 5.0 2.8 1.3 110 chr3L 3254087 5` UTR CR43626 + chr3L 3254142 5` UTR CR43626 + chr3L 3254197 5` UTR CR43626 + chr3L_5_3250001 chr3L_3250001 RAL-812 755 chr3L 3281439 3281473 chr3L 3281935 3281969 Doc 8 495 2.5 7.5 5.0 1.3 530 chr3L 3281439 intron CG12017 + chr3L 3281704 intron CG12017 + chr3L 3281969 intron CG12017 + chr3L_8_3280001 chr3L_3280001 RAL-812 756 chr3L 3475073 3475101 chr3L 3475517 3475537 jockey 11 443 1.5 2.5 2.0 3.7 464 chr3L 3475073 intron CG42324 + chr3L 3475305 intron CG42324 + chr3L 3475537 intron CG42324 + chr3L_11_3475001 chr3L_3475001 RAL-812 757 chr3L 3484423 3484443 chr3L 3484500 3484520 5 77 2.0 4.0 3.0 1.2 97 chr3L 3484423 intron,intron CG42324 +,CG43074 - chr3L 3484472 intron,exon CG42324 +,CG43074 - chr3L 3484520 intron,intron CG42324 +,CG43074 - chr3L_5_3480001 chr3L_3480001 RAL-812 758 chr3L 3494756 3494779 chr3L 3494834 3494855 11 77 5.0 3.5 4.2 2.1 99 chr3L 3494756 intron CG42324 + chr3L 3494806 intron CG42324 + chr3L 3494855 intron CG42324 + chr3L_11_3490001 chr3L_3490001 RAL-812 759 chr3L 3551445 3551471 chr3L 3551534 3551560 4 87 2.5 3.5 3.0 1.0 115 chr3L 3551445 intron Eip63E + chr3L 3551502 intron Eip63E + chr3L 3551560 intron Eip63E + chr3L_4_3550001 chr3L_3550001 RAL-812 760 chr3L 3574806 3574835 chr3L 3575065 3575094 4 259 2.0 1.0 1.5 1.6 288 chr3L 3574806 intron Eip63E + chr3L 3574950 intron Eip63E + chr3L 3575094 intron Eip63E + chr3L_4_3570001 chr3L_3570001 RAL-812 761 chr3L 3577739 3577767 chr3L 3577817 3577845 10 78 1.5 2.5 2.0 3.3 106 chr3L 3577739 intron Eip63E + chr3L 3577792 intron Eip63E + chr3L 3577845 intron Eip63E + chr3L_10_3575001 chr3L_3575001 RAL-812 762 chr3L 3601303 3601330 chr3L 3606614 3606637 copia 7 5310 2.5 5.0 3.8 1.5 5334 chr3L 3601303 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606637 intron Eip63E + chr3L_7_3600001 chr3L_3600001 RAL-812 763 chr3L 3763756 3763766 chr3L 3763837 3763844 5 80 5.5 0.0 2.8 1.3 88 chr3L 3763756 intron CG32264 - chr3L 3763800 intron CG32264 - chr3L 3763844 intron CG32264 - chr3L_5_3760001 chr3L_3760001 RAL-812 764 chr3L 3815053 3815077 chr3L 3815134 3815158 10 81 3.5 1.5 2.5 2.9 105 chr3L 3815053 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815106 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815158 intron,intron Scsalpha +,CR43932 - chr3L_10_3815001 chr3L_3815001 RAL-812 765 chr3L 3833751 3833767 chr3L 3833992 3834008 pogo 5 241 1.5 2.0 1.8 1.8 257 chr3L 3833751 intron enc + chr3L 3833880 intron enc + chr3L 3834008 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-812 766 chr3L 3890972 3890989 chr3L 3891053 3891070 5 81 2.0 0.0 1.0 2.5 98 chr3L 3890972 intergenic not near genes chr3L 3891021 intergenic not near genes chr3L 3891070 intergenic not near genes chr3L_5_3890001 chr3L_3890001 RAL-812 767 chr3L 3921391 3921425 chr3L 3921655 3921689 18 263 1.5 3.5 2.5 5.1 298 chr3L 3921391 intron Eip63F-1 - chr3L 3921540 intron Eip63F-1 - chr3L 3921689 intron Eip63F-1 - chr3L_18_3920001 chr3L_3920001 RAL-812 768 chr3L 4168225 4168230 chr3L 4168304 4168309 4 79 0.0 2.5 1.2 1.8 84 chr3L 4168225 intergenic CR44529 - chr3L 4168267 3` UTR CR44529 - chr3L 4168309 3` UTR CR44529 - chr3L_4_4165001 chr3L_4165001 RAL-812 769 chr3L 4328740 4328759 chr3L 4336238 4336256 412 4 7498 1.0 3.0 2.0 1.3 7516 chr3L 4328740 intron Cip4 - chr3L 4332498 intron Cip4 - chr3L 4336256 intron Cip4 - chr3L_4_4330001 chr3L_4330001 RAL-812 770 chr3L 4382311 4382337 chr3L 4382413 4382439 12 102 3.5 2.5 3.0 3.0 128 chr3L 4382311 intergenic not near genes chr3L 4382375 intergenic not near genes chr3L 4382439 intergenic not near genes chr3L_12_4380001 chr3L_4380001 RAL-812 771 chr3L 4484725 4484750 chr3L 4484803 4484828 4 76 1.0 1.5 1.2 1.8 103 chr3L 4484725 intergenic CG11350 +,CG13722 - chr3L 4484776 intergenic CG13722 -,CG11350 + chr3L 4484828 intergenic CG13722 -,CG11350 + chr3L_4_4480001 chr3L_4480001 RAL-812 772 chr3L 4652582 4652600 chr3L 4652665 4652683 6 83 1.5 2.5 2.0 2.0 101 chr3L 4652582 intron axo - chr3L 4652632 intron axo - chr3L 4652683 intron axo - chr3L_6_4650001 chr3L_4650001 RAL-812 773 chr3L 4744404 4744431 chr3L 4744484 4744511 11 79 1.5 0.0 0.8 6.1 107 chr3L 4744404 intron RhoGEF64C + chr3L 4744458 intron RhoGEF64C + chr3L 4744511 intron RhoGEF64C + chr3L_11_4740001 chr3L_4740001 RAL-812 774 chr3L 4754759 4754765 chr3L 4754832 4754841 5 75 2.0 2.5 2.2 1.6 82 chr3L 4754759 intron RhoGEF64C + chr3L 4754800 intron RhoGEF64C + chr3L 4754841 intron RhoGEF64C + chr3L_5_4750001 chr3L_4750001 RAL-812 775 chr3L 4837899 4837922 chr3L 4837978 4837997 6 78 0.5 6.5 3.5 1.3 98 chr3L 4837899 3` UTR CG13707 - chr3L 4837948 3` UTR CG13707 - chr3L 4837997 3` UTR CG13707 - chr3L_6_4835001 chr3L_4835001 RAL-812 776 chr3L 4840408 4840421 chr3L 4840517 4840529 8 108 0.0 3.0 1.5 3.2 121 chr3L 4840408 intergenic CG13707 - chr3L 4840468 intergenic CG13707 - chr3L 4840529 intergenic CG13707 - chr3L_8_4840001 chr3L_4840001 RAL-812 777 chr3L 4858301 4858332 chr3L 4858391 4858422 14 89 6.0 3.0 4.5 2.5 121 chr3L 4858301 intergenic not near genes chr3L 4858362 intergenic not near genes chr3L 4858422 intergenic not near genes chr3L_14_4855001 chr3L_4855001 RAL-812 778 chr3L 4899687 4899712 chr3L 4899770 4899795 8 82 2.0 3.5 2.8 2.1 108 chr3L 4899687 intron CG13704 + chr3L 4899741 intron CG13704 + chr3L 4899795 intron CG13704 + chr3L_8_4895001 chr3L_4895001 RAL-812 779 chr3L 5015953 5015970 chr3L 5016039 5016056 6 85 2.0 5.5 3.8 1.2 103 chr3L 5015953 intron Con - chr3L 5016004 intron Con - chr3L 5016056 intron Con - chr3L_6_5015001 chr3L_5015001 RAL-812 780 chr3L 5030772 5030799 chr3L 5030842 5030873 12 74 5.0 4.5 4.8 2.1 101 chr3L 5030772 intron Con - chr3L 5030822 intron Con - chr3L 5030873 intron Con - chr3L_12_5030001 chr3L_5030001 RAL-812 781 chr3L 5034156 5034178 chr3L 5043308 5043320 roo 6 9149 3.5 0.5 2.0 2.0 9164 chr3L 5034156 intron Con - chr3L 5038738 intron Con - chr3L 5043320 intron Con - chr3L_6_5035001 chr3L_5035001 RAL-812 782 chr3L 5104484 5104503 chr3L 5124618 5124637 4 20134 3.5 4.0 3.8 0.8 20153 chr3L 5104484 intergenic not near genes chr3L 5114560 intergenic not near genes chr3L 5124637 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-812 783 chr3L 5220834 5220859 chr3L 5220927 5220954 7 95 2.5 4.0 3.2 1.7 120 chr3L 5220834 intron shep - chr3L 5220894 intron shep - chr3L 5220954 intron shep - chr3L_7_5220001 chr3L_5220001 RAL-812 784 chr3L 5297575 5297600 chr3L 5297691 5297715 8 114 2.5 3.5 3.0 2.0 140 chr3L 5297575 intergenic not near genes chr3L 5297645 intergenic not near genes chr3L 5297715 intergenic not near genes chr3L_8_5295001 chr3L_5295001 RAL-812 785 chr3L 5403454 5403478 chr3L 5403850 5403876 7 397 2.0 1.0 1.5 2.8 422 chr3L 5403454 intergenic not near genes chr3L 5403665 intergenic not near genes chr3L 5403876 intergenic not near genes chr3L_7_5400001 chr3L_5400001 RAL-812 786 chr3L 5483066 5483126 chr3L 5483169 5483253 4 106 26.0 31.5 28.8 0.1 187 chr3L 5483066 exon CG4835 + chr3L 5483160 exon CG4835 + chr3L 5483253 exon CG4835 + chr3L_4_5480001 chr3L_5480001 RAL-812 787 chr3L 5493800 5493826 chr3L 5493879 5493906 5 79 1.0 3.0 2.0 1.7 106 chr3L 5493800 3` UTR CR44520 - chr3L 5493853 3` UTR CR44520 - chr3L 5493906 3` UTR CR44520 - chr3L_5_5490001 chr3L_5490001 RAL-812 788 chr3L 5498416 5498424 chr3L 5498493 5498501 4 75 1.0 5.5 3.2 1.0 85 chr3L 5498416 exon blanks - chr3L 5498458 exon blanks - chr3L 5498501 exon blanks - chr3L_4_5495001 chr3L_5495001 RAL-812 789 chr3L 5516409 5516427 chr3L 5516504 5516522 4 95 4.5 3.0 3.8 0.8 113 chr3L 5516409 intron Lkr - chr3L 5516466 intron Lkr - chr3L 5516522 intron Lkr - chr3L_4_5515001 chr3L_5515001 RAL-812 790 chr3L 5667629 5667643 chr3L 5667709 5667722 4 80 3.5 0.0 1.8 1.4 93 chr3L 5667629 intron sif + chr3L 5667676 intron sif + chr3L 5667722 intron sif + chr3L_4_5665001 chr3L_5665001 RAL-812 791 chr3L 5910035 5910057 chr3L 5910275 5910298 pogo 8 241 3.5 2.0 2.8 2.1 263 chr3L 5910035 intron CG13288 + chr3L 5910166 intron CG13288 + chr3L 5910298 intron CG13288 + chr3L_8_5910001 chr3L_5910001 RAL-812 792 chr3L 5926316 5926323 chr3L 5926506 5926513 BS 5 189 10.0 5.5 7.8 0.6 197 chr3L 5926316 intron Vap-33B + chr3L 5926414 intron Vap-33B + chr3L 5926513 intron Vap-33B + chr3L_5_5925001 chr3L_5925001 RAL-812 793 chr3L 5926335 5926349 chr3L 5926503 5926539 BS 5 178 5.5 5.0 5.2 0.8 204 chr3L 5926335 intron Vap-33B + chr3L 5926437 intron Vap-33B + chr3L 5926539 intron Vap-33B + chr3L_5_5925001 chr3L_5925001 RAL-812 794 chr3L 5953028 5953060 chr3L 5955660 5955692 11 2632 14.0 27.5 20.8 0.5 2664 chr3L 5953028 intergenic not near genes chr3L 5954360 intergenic not near genes chr3L 5955692 intergenic not near genes chr3L_11_5950001 chr3L_5950001 RAL-812 795 chr3L 6103417 6103437 chr3L 6103495 6103516 7 74 5.5 4.5 5.0 1.2 99 chr3L 6103417 intron Ets65A + chr3L 6103466 intron Ets65A + chr3L 6103516 intron Ets65A + chr3L_7_6100001 chr3L_6100001 RAL-812 796 chr3L 6185600 6185626 chr3L 6185678 6185704 5 78 4.0 1.5 2.8 1.3 104 chr3L 6185600 exon CG43293 + chr3L 6185652 intron CG43293 + chr3L 6185704 exon CG43293 + chr3L_5_6185001 chr3L_6185001 RAL-812 797 chr3L 6220913 6220944 chr3L 6230065 6230096 roo 12 9151 5.5 7.5 6.5 1.6 9183 chr3L 6220913 5` UTR pncr008:3L + chr3L 6225504 intergenic not near genes chr3L 6230096 intergenic not near genes chr3L_12_6225001 chr3L_6225001 RAL-812 798 chr3L 6335018 6335041 chr3L 6335487 6335512 297 7 470 4.0 6.0 5.0 1.2 494 chr3L 6335018 intron CG13300 - chr3L 6335265 intron CG13300 - chr3L 6335512 intron CG13300 - chr3L_7_6335001 chr3L_6335001 RAL-812 799 chr3L 6706427 6706452 chr3L 6706506 6706530 9 79 1.5 2.5 2.0 3.0 103 chr3L 6706427 intron CG8519 + chr3L 6706478 intron CG8519 + chr3L 6706530 intron CG8519 + chr3L_9_6705001 chr3L_6705001 RAL-812 800 chr3L 6855934 6855951 chr3L 6860717 6860731 Doc 9 4783 6.5 2.5 4.5 1.6 4797 chr3L 6855934 intergenic not near genes chr3L 6858332 intergenic not near genes chr3L 6860731 intergenic not near genes chr3L_9_6855001 chr3L_6855001 RAL-812 801 chr3L 6887525 6887551 chr3L 6895017 6895043 roo 10 7492 2.5 5.5 4.0 2.0 7518 chr3L 6887525 intergenic not near genes chr3L 6891284 intergenic not near genes chr3L 6895043 intergenic not near genes chr3L_10_6890001 chr3L_6890001 RAL-812 802 chr3L 6974509 6974521 chr3L 6974610 6974621 11 101 0.0 4.0 2.0 3.7 112 chr3L 6974509 intron Galphai - chr3L 6974565 intron Galphai - chr3L 6974621 intron Galphai - chr3L_11_6970001 chr3L_6970001 RAL-812 803 chr3L 6994899 6994917 chr3L 6995510 6995528 BS 5 611 0.0 1.5 0.8 2.8 629 chr3L 6994899 intergenic bin + chr3L 6995214 intergenic not near genes chr3L 6995528 intergenic not near genes chr3L_5_6995001 chr3L_6995001 RAL-812 804 chr3L 7076508 7076542 chr3L 7076617 7076651 10 109 1.0 3.0 2.0 3.3 143 chr3L 7076508 intron CG8641 - chr3L 7076580 intron CG8641 - chr3L 7076651 intron CG8641 - chr3L_10_7075001 chr3L_7075001 RAL-812 805 chr3L 7143298 7143331 chr3L 7143413 7143446 10 115 1.5 1.0 1.2 4.5 148 chr3L 7143298 3` UTR corn - chr3L 7143372 3` UTR corn - chr3L 7143446 3` UTR corn - chr3L_10_7140001 chr3L_7140001 RAL-812 806 chr3L 7235803 7235821 chr3L 7235882 7235900 5 79 5.0 0.0 2.5 1.4 97 chr3L 7235803 3` UTR CG14826 + chr3L 7235852 3` UTR CG14826 + chr3L 7235900 3` UTR CG14826 + chr3L_5_7235001 chr3L_7235001 RAL-812 807 chr3L 7285457 7285466 chr3L 7285535 7285544 4 78 2.0 3.5 2.8 1.1 87 chr3L 7285457 intron unc-13-4A - chr3L 7285500 intron unc-13-4A - chr3L 7285544 intron unc-13-4A - chr3L_4_7285001 chr3L_7285001 RAL-812 808 chr3L 7328948 7328976 chr3L 7329027 7329054 6 80 1.0 4.5 2.8 1.6 106 chr3L 7328948 intergenic CG8602 -,CG42307 +,mus312 + chr3L 7329001 intergenic CG42307 +,mus312 +,CG8602 - chr3L 7329054 intergenic CG42307 +,mus312 +,CG8602 - chr3L_6_7325001 chr3L_7325001 RAL-812 809 chr3L 7377319 7377342 chr3L 7380424 7380447 297 6 3105 0.0 4.5 2.2 1.9 3128 chr3L 7377319 intron SMSr - chr3L 7378883 intron SMSr - chr3L 7380447 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-812 810 chr3L 7498754 7498774 chr3L 7503532 7503552 F-element 4 4778 4.0 1.5 2.8 1.1 4798 chr3L 7498754 5` UTR CG8539 - chr3L 7501153 intergenic not near genes chr3L 7503552 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-812 811 chr3L 7505417 7505440 chr3L 7505493 7505513 4 75 1.0 1.5 1.2 1.8 96 chr3L 7505417 intergenic CG7548 - chr3L 7505465 intergenic CG7548 - chr3L 7505513 intergenic CG7548 - chr3L_4_7505001 chr3L_7505001 RAL-812 812 chr3L 7576212 7576243 chr3L 7576300 7576329 14 86 2.0 2.5 2.2 4.4 117 chr3L 7576212 intergenic not near genes chr3L 7576270 intergenic not near genes chr3L 7576329 intergenic not near genes chr3L_14_7575001 chr3L_7575001 RAL-812 813 chr3L 7691834 7691863 chr3L 7691926 7691955 8 91 3.5 2.0 2.8 2.1 121 chr3L 7691834 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691894 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L 7691955 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_8_7690001 chr3L_7690001 RAL-812 814 chr3L 7760090 7760107 chr3L 7760166 7760183 4 76 2.5 3.5 3.0 1.0 93 chr3L 7760090 intergenic Hn + chr3L 7760136 intergenic Hn + chr3L 7760183 intergenic Hn + chr3L_4_7760001 chr3L_7760001 RAL-812 815 chr3L 7883744 7883778 chr3L 7883901 7883926 6 154 4.0 0.0 2.0 2.0 182 chr3L 7883744 intron CG32365 + chr3L 7883835 intron CG32365 + chr3L 7883926 intron CG32365 + chr3L_6_7880001 chr3L_7880001 RAL-812 816 chr3L 7886513 7886547 chr3L 7889031 7889065 Stalker4 14 2518 2.5 0.0 1.2 6.4 2552 chr3L 7886513 intron CG32365 + chr3L 7887789 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_14_7885001 chr3L_7885001 RAL-812 817 chr3L 7985371 7985396 chr3L 7987690 7987724 NOF 12 2327 2.0 2.0 2.0 4.0 2353 chr3L 7985371 intron nmo + chr3L 7986548 intron nmo + chr3L 7987724 intron nmo + chr3L_12_7985001 chr3L_7985001 RAL-812 818 chr3L 8025851 8025883 chr3L 8025932 8025964 11 81 2.5 1.0 1.8 3.9 113 chr3L 8025851 intron nmo + chr3L 8025908 intron nmo + chr3L 8025964 intron nmo + chr3L_11_8025001 chr3L_8025001 RAL-812 819 chr3L 8203547 8203567 chr3L 8203622 8203644 5 75 3.0 3.5 3.2 1.2 97 chr3L 8203547 intergenic CG13679 + chr3L 8203596 intergenic CG13679 + chr3L 8203644 intergenic CG13679 + chr3L_5_8200001 chr3L_8200001 RAL-812 820 chr3L 8295790 8295823 chr3L 8295948 8295981 13 158 3.5 3.5 3.5 2.9 191 chr3L 8295790 intergenic CG7201 - chr3L 8295886 intergenic not near genes chr3L 8295981 intergenic not near genes chr3L_13_8295001 chr3L_8295001 RAL-812 821 chr3L 8395846 8395856 chr3L 8395928 8395952 4 92 5.5 2.0 3.8 0.8 106 chr3L 8395846 intergenic CG7120 + chr3L 8395899 intergenic CG7120 + chr3L 8395952 intergenic CG7120 + chr3L_4_8395001 chr3L_8395001 RAL-812 822 chr3L 8456476 8456489 chr3L 8456569 8456582 9 91 6.0 9.0 7.5 1.1 106 chr3L 8456476 intron Gug + chr3L 8456529 intron Gug + chr3L 8456582 intron Gug + chr3L_9_8455001 chr3L_8455001 RAL-812 823 chr3L 8481802 8481806 chr3L 8490930 8490936 roo 4 9132 1.0 1.5 1.2 1.8 9134 chr3L 8481802 intron CG43163 - chr3L 8486369 intron CG43163 - chr3L 8490936 intron CG43163 - chr3L_4_8485001 chr3L_8485001 RAL-812 824 chr3L 8498309 8498321 chr3L 8505776 8505786 blood 4 7466 2.0 4.5 3.2 1.0 7477 chr3L 8498309 intron CG43163 - chr3L 8502048 intron CG43163 - chr3L 8505786 intron CG43163 - chr3L_4_8500001 chr3L_8500001 RAL-812 825 chr3L 8682612 8682646 chr3L 8682697 8682733 8 87 2.5 1.5 2.0 2.7 121 chr3L 8682612 intergenic not near genes chr3L 8682672 intergenic not near genes chr3L 8682733 intergenic not near genes chr3L_8_8680001 chr3L_8680001 RAL-812 826 chr3L 8692999 8693019 chr3L 8693105 8693125 4 106 4.5 2.5 3.5 0.9 126 chr3L 8692999 5` UTR CR44526 + chr3L 8693062 5` UTR CR44526 + chr3L 8693125 5` UTR CR44526 + chr3L_4_8690001 chr3L_8690001 RAL-812 827 chr3L 8791274 8791284 chr3L 8796694 8796704 I-element 4 5420 4.5 5.0 4.8 0.7 5430 chr3L 8791274 exon Fhos + chr3L 8793989 intron Fhos + chr3L 8796704 intron Fhos + chr3L_4_8790001 chr3L_8790001 RAL-812 828 chr3L 9013691 9013692 chr3L 18417066 18417066 5 9403375 25.0 20.5 22.8 0.2 9403375 chr3L 9013691 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_5_13715001 chr3L_13715001 RAL-812 829 chr3L 9067319 9067350 chr3L 9067398 9067429 7 79 0.5 1.5 1.0 3.5 110 chr3L 9067319 3` UTR CG4911 - chr3L 9067374 3` UTR CG4911 - chr3L 9067429 3` UTR CG4911 - chr3L_7_9065001 chr3L_9065001 RAL-812 830 chr3L 9076931 9076960 chr3L 9084491 9084520 412 14 7560 3.0 8.0 5.5 2.2 7589 chr3L 9076931 exon Tequila + chr3L 9080726 intron Tequila + chr3L 9084520 exon Tequila + chr3L_14_9080001 chr3L_9080001 RAL-812 831 chr3L 9118332 9118344 chr3L 9118429 9118442 7 97 5.5 6.5 6.0 1.0 110 chr3L 9118332 intron bol - chr3L 9118387 intron bol - chr3L 9118442 intron bol - chr3L_7_9115001 chr3L_9115001 RAL-812 832 chr3L 9130558 9130580 chr3L 9134319 9134341 412 12 3760 5.0 5.5 5.2 1.9 3783 chr3L 9130558 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134341 intergenic Dhpr + chr3L_12_9130001 chr3L_9130001 RAL-812 833 chr3L 9219243 9219275 chr3L 9219915 9219921 jockey 14 667 2.0 5.0 3.5 3.1 678 chr3L 9219243 intergenic not near genes chr3L 9219582 intergenic not near genes chr3L 9219921 intergenic not near genes chr3L_14_9215001 chr3L_9215001 RAL-812 834 chr3L 9232857 9232869 chr3L 9232933 9232945 6 75 2.5 1.5 2.0 2.0 88 chr3L 9232857 intergenic not near genes chr3L 9232901 intergenic not near genes chr3L 9232945 intergenic not near genes chr3L_6_9230001 chr3L_9230001 RAL-812 835 chr3L 9234531 9234559 chr3L 9234742 9234770 14 211 3.5 4.5 4.0 2.8 239 chr3L 9234531 intergenic not near genes chr3L 9234650 intergenic CG4483 - chr3L 9234770 intergenic CG4483 - chr3L_14_9230001 chr3L_9230001 RAL-812 836 chr3L 9270616 9270646 chr3L 9278371 9278397 roo 6 7754 2.0 1.5 1.8 2.1 7781 chr3L 9270616 intron GluRIB + chr3L 9274506 intron GluRIB + chr3L 9278397 exon GluRIB + chr3L_6_9270001 chr3L_9270001 RAL-812 837 chr3L 9313027 9313027 chr3L 11777678 11777678 5 2464651 10.0 16.5 13.2 0.4 2464651 chr3L 9313027 intergenic not near genes chr3L 10545352 intron A2bp1 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_5_10545001 chr3L_10545001 RAL-812 838 chr3L 9314047 9314058 chr3L 9314125 9314136 5 78 0.0 0.0 0.0 5.0 89 chr3L 9314047 intergenic not near genes chr3L 9314092 intergenic not near genes chr3L 9314136 intergenic not near genes chr3L_5_9310001 chr3L_9310001 RAL-812 839 chr3L 9437937 9437967 chr3L 9438048 9438078 8 110 2.0 1.5 1.8 2.9 141 chr3L 9437937 intron MTF-1 + chr3L 9438008 intron MTF-1 + chr3L 9438078 intron MTF-1 + chr3L_8_9435001 chr3L_9435001 RAL-812 840 chr3L 9443517 9443544 chr3L 9445304 9445331 S-element 5 1785 2.0 3.0 2.5 1.4 1814 chr3L 9443517 intron CG33926 + chr3L 9444424 intron CG33926 + chr3L 9445331 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-812 841 chr3L 9510910 9510955 chr3L 9511003 9511034 7 83 0.0 2.5 1.2 3.2 124 chr3L 9510910 intron RpS9 - chr3L 9510972 intron RpS9 - chr3L 9511034 intron RpS9 - chr3L_7_9510001 chr3L_9510001 RAL-812 842 chr3L 9532486 9532514 chr3L 9532581 9532609 7 93 0.0 2.0 1.0 3.5 123 chr3L 9532486 intergenic not near genes chr3L 9532548 intergenic not near genes chr3L 9532609 intergenic not near genes chr3L_7_9530001 chr3L_9530001 RAL-812 843 chr3L 9533776 9533781 chr3L 9541317 9541338 412 4 7551 5.0 7.5 6.2 0.6 7562 chr3L 9533776 intergenic not near genes chr3L 9537557 intergenic not near genes chr3L 9541338 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-812 844 chr3L 9571905 9571931 chr3L 9572253 9572279 jockey 4 348 2.0 3.0 2.5 1.1 374 chr3L 9571905 intron CG42673 + chr3L 9572092 intron CG42673 + chr3L 9572279 intron CG42673 + chr3L_4_9570001 chr3L_9570001 RAL-812 845 chr3L 9575910 9575942 chr3L 9580984 9581014 jockey 6 5076 7.5 1.0 4.2 1.2 5104 chr3L 9575910 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581014 intron CG42673 + chr3L_6_9575001 chr3L_9575001 RAL-812 846 chr3L 9657959 9657987 chr3L 9658036 9658062 8 76 1.5 2.5 2.0 2.7 103 chr3L 9657959 intron,intron fry -,CG33696 + chr3L 9658010 intron,intron fry -,CG33696 + chr3L 9658062 intron,intron fry -,CG33696 + chr3L_8_9655001 chr3L_9655001 RAL-812 847 chr3L 9675846 9675878 chr3L 9675929 9675961 12 82 2.5 3.5 3.0 3.0 115 chr3L 9675846 intron fry - chr3L 9675904 intron fry - chr3L 9675961 intron fry - chr3L_12_9675001 chr3L_9675001 RAL-812 848 chr3L 9699930 9699961 chr3L 9700017 9700046 6 87 1.0 1.0 1.0 3.0 116 chr3L 9699930 3` UTR UbcD4 + chr3L 9699988 3` UTR UbcD4 + chr3L 9700046 3` UTR UbcD4 + chr3L_6_9695001 chr3L_9695001 RAL-812 849 chr3L 9716723 9716753 chr3L 9718504 9718534 15 1783 23.0 40.0 31.5 0.5 1811 chr3L 9716723 3` UTR vsg + chr3L 9717628 3` UTR vsg + chr3L 9718534 exon CG18178 - chr3L_15_9715001 chr3L_9715001 RAL-812 850 chr3L 9848518 9848548 chr3L 9848594 9848624 10 76 4.0 0.0 2.0 3.3 106 chr3L 9848518 intron RasGAP1 - chr3L 9848571 intron RasGAP1 - chr3L 9848624 intron RasGAP1 - chr3L_10_9845001 chr3L_9845001 RAL-812 851 chr3L 9853010 9853040 chr3L 9853110 9853140 13 100 0.5 3.0 1.8 4.6 130 chr3L 9853010 intron RasGAP1 - chr3L 9853075 intron RasGAP1 - chr3L 9853140 intron RasGAP1 - chr3L_13_9850001 chr3L_9850001 RAL-812 852 chr3L 9895360 9895381 chr3L 9895438 9895461 8 78 3.5 4.5 4.0 1.6 101 chr3L 9895360 3` UTR CG6707 - chr3L 9895410 3` UTR CG6707 - chr3L 9895461 3` UTR CG6707 - chr3L_8_9895001 chr3L_9895001 RAL-812 853 chr3L 9918882 9918911 chr3L 9918976 9919006 16 93 2.5 5.5 4.0 3.2 124 chr3L 9918882 intron CG34356 + chr3L 9918944 intron CG34356 + chr3L 9919006 intron CG34356 + chr3L_16_9915001 chr3L_9915001 RAL-812 854 chr3L 9929671 9929699 chr3L 9938451 9938479 roo 11 8776 1.5 2.5 2.0 3.7 8808 chr3L 9929671 intron CG34356 + chr3L 9934075 intron CG34356 + chr3L 9938479 intron CG34356 + chr3L_11_9930001 chr3L_9930001 RAL-812 855 chr3L 10127741 10127770 chr3L 10127814 10127846 9 69 1.5 0.5 1.0 4.5 105 chr3L 10127741 intron dpr6 + chr3L 10127794 intron dpr6 + chr3L 10127846 intron dpr6 + chr3L_9_10125001 chr3L_10125001 RAL-812 856 chr3L 10175869 10175893 chr3L 10176096 10176120 8 227 1.0 2.0 1.5 3.2 251 chr3L 10175869 intron dpr10 - chr3L 10175994 intron dpr10 - chr3L 10176120 intron dpr10 - chr3L_8_10175001 chr3L_10175001 RAL-812 857 chr3L 10214740 10214830 chr3L 10214827 10214932 6 94 0.0 0.0 0.0 6.0 192 chr3L 10214740 intergenic not near genes chr3L 10214836 intergenic not near genes chr3L 10214932 intergenic not near genes chr3L_6_10210001 chr3L_10210001 RAL-812 858 chr3L 10250332 10250358 chr3L 10250423 10250448 15 90 1.0 3.0 2.0 5.0 116 chr3L 10250332 intergenic not near genes chr3L 10250390 intergenic not near genes chr3L 10250448 intergenic not near genes chr3L_15_10250001 chr3L_10250001 RAL-812 859 chr3L 10258928 10258943 chr3L 10259101 10259115 9 173 4.5 4.5 4.5 1.6 187 chr3L 10258928 intergenic not near genes chr3L 10259022 intergenic not near genes chr3L 10259115 intergenic not near genes chr3L_9_10255001 chr3L_10255001 RAL-812 860 chr3L 10298669 10298696 chr3L 10298756 10298783 5 87 0.5 0.5 0.5 3.3 114 chr3L 10298669 intergenic not near genes chr3L 10298726 intergenic not near genes chr3L 10298783 intergenic not near genes chr3L_5_10295001 chr3L_10295001 RAL-812 861 chr3L 10310112 10310147 chr3L 10310200 10310232 4 86 6.5 5.0 5.8 0.6 120 chr3L 10310112 intergenic not near genes chr3L 10310172 intergenic not near genes chr3L 10310232 intergenic not near genes chr3L_4_10310001 chr3L_10310001 RAL-812 862 chr3L 10398468 10398480 chr3L 10398786 10398798 4 318 5.5 0.0 2.8 1.1 330 chr3L 10398468 intergenic not near genes chr3L 10398633 intergenic not near genes chr3L 10398798 intergenic not near genes chr3L_4_10395001 chr3L_10395001 RAL-812 863 chr3L 10414945 10414975 chr3L 10417316 10417347 Doc 9 2371 1.0 2.0 1.5 3.6 2402 chr3L 10414945 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_9_10415001 chr3L_10415001 RAL-812 864 chr3L 10417585 10417594 chr3L 10417662 10417671 4 77 5.5 6.5 6.0 0.6 86 chr3L 10417585 intergenic not near genes chr3L 10417628 intergenic not near genes chr3L 10417671 intergenic not near genes chr3L_4_10415001 chr3L_10415001 RAL-812 865 chr3L 10417597 10417604 chr3L 10417659 10417680 7 73 5.0 6.0 5.5 1.1 83 chr3L 10417597 intergenic not near genes chr3L 10417638 intergenic not near genes chr3L 10417680 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-812 866 chr3L 10450701 10450710 chr3L 10450781 10450789 4 80 0.0 2.5 1.2 1.8 88 chr3L 10450701 intergenic not near genes chr3L 10450745 intergenic not near genes chr3L 10450789 intergenic not near genes chr3L_4_10450001 chr3L_10450001 RAL-812 867 chr3L 10485077 10485113 chr3L 10485238 10485275 9 162 2.0 1.0 1.5 3.6 198 chr3L 10485077 intron A2bp1 + chr3L 10485176 intron A2bp1 + chr3L 10485275 intron A2bp1 + chr3L_9_10485001 chr3L_10485001 RAL-812 868 chr3L 10600460 10600468 chr3L 10600542 10600550 6 82 0.5 1.5 1.0 3.0 90 chr3L 10600460 intergenic not near genes chr3L 10600505 intergenic not near genes chr3L 10600550 intergenic not near genes chr3L_6_10600001 chr3L_10600001 RAL-812 869 chr3L 10618272 10618278 chr3L 10619538 10619548 6 1270 7.5 1.0 4.2 1.2 1276 chr3L 10618272 intergenic not near genes chr3L 10618910 intergenic not near genes chr3L 10619548 intergenic not near genes chr3L_6_10615001 chr3L_10615001 RAL-812 870 chr3L 10705575 10705601 chr3L 10705652 10705679 12 78 1.5 3.0 2.2 3.8 104 chr3L 10705575 intergenic not near genes chr3L 10705627 intergenic not near genes chr3L 10705679 intergenic not near genes chr3L_12_10705001 chr3L_10705001 RAL-812 871 chr3L 10745543 10745551 chr3L 10745623 10745631 4 80 3.5 2.0 2.8 1.1 88 chr3L 10745543 intergenic not near genes chr3L 10745587 intergenic not near genes chr3L 10745631 intergenic not near genes chr3L_4_10745001 chr3L_10745001 RAL-812 872 chr3L 10790783 10790803 chr3L 10790880 10790900 4 97 0.0 1.5 0.8 2.2 117 chr3L 10790783 intergenic not near genes chr3L 10790842 intergenic not near genes chr3L 10790900 intergenic not near genes chr3L_4_10790001 chr3L_10790001 RAL-812 873 chr3L 10842875 10842895 chr3L 10842953 10842985 10 82 0.0 5.0 2.5 2.9 110 chr3L 10842875 intergenic not near genes chr3L 10842930 intergenic not near genes chr3L 10842985 intergenic not near genes chr3L_10_10840001 chr3L_10840001 RAL-812 874 chr3L 10971282 10971301 chr3L 10971521 10971531 5 237 3.0 0.0 1.5 2.0 249 chr3L 10971282 intergenic not near genes chr3L 10971406 intergenic not near genes chr3L 10971531 intergenic not near genes chr3L_5_10970001 chr3L_10970001 RAL-812 875 chr3L 11029440 11029445 chr3L 11029551 11029556 4 111 2.0 3.5 2.8 1.1 116 chr3L 11029440 3` UTR CG32081 + chr3L 11029498 intergenic CG32081 + chr3L 11029556 intergenic CG32081 + chr3L_4_11025001 chr3L_11025001 RAL-812 876 chr3L 11105295 11105329 chr3L 11107006 11107040 X-element 6 1711 2.5 3.0 2.8 1.6 1745 chr3L 11105295 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107040 exon CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-812 877 chr3L 11135531 11135804 chr3L 11135761 11135889 12 109 1.5 1.5 1.5 4.8 358 chr3L 11135531 intergenic CG14143 + chr3L 11135710 intergenic CG14143 +,CG32082 + chr3L 11135889 intergenic CG32082 +,CG14143 + chr3L_12_11135001 chr3L_11135001 RAL-812 878 chr3L 11245091 11245119 chr3L 11245183 11245211 11 92 3.0 4.0 3.5 2.4 120 chr3L 11245091 intergenic not near genes chr3L 11245151 intergenic not near genes chr3L 11245211 intergenic not near genes chr3L_11_11245001 chr3L_11245001 RAL-812 879 chr3L 11329694 11329725 chr3L 11332893 11332911 jockey 5 3195 7.0 3.0 5.0 0.8 3217 chr3L 11329694 intergenic not near genes chr3L 11331302 intergenic not near genes chr3L 11332911 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-812 880 chr3L 11334128 11334146 chr3L 11334216 11334234 6 88 2.0 2.5 2.2 1.9 106 chr3L 11334128 intergenic not near genes chr3L 11334181 intergenic not near genes chr3L 11334234 intergenic not near genes chr3L_6_11330001 chr3L_11330001 RAL-812 881 chr3L 11340535 11340552 chr3L 11340658 11340658 9 122 2.5 2.5 2.5 2.6 123 chr3L 11340535 intergenic not near genes chr3L 11340596 intergenic not near genes chr3L 11340658 intergenic not near genes chr3L_9_11340001 chr3L_11340001 RAL-812 882 chr3L 11435560 11435590 chr3L 11435729 11435759 12 169 5.0 4.0 4.5 2.2 199 chr3L 11435560 intergenic CG6149 -,CR44548 + chr3L 11435660 5` UTR CR44548 + chr3L 11435759 5` UTR CR44548 + chr3L_12_11435001 chr3L_11435001 RAL-812 883 chr3L 11528238 11528253 chr3L 11528319 11528334 5 80 2.0 1.5 1.8 1.8 96 chr3L 11528238 intron Mob2 - chr3L 11528286 intron Mob2 - chr3L 11528334 intron Mob2 - chr3L_5_11525001 chr3L_11525001 RAL-812 884 chr3L 11564798 11564812 chr3L 11572404 11572436 412 7 7614 3.5 1.0 2.2 2.2 7638 chr3L 11564798 exon CG33267 + chr3L 11568617 intron CG33267 + chr3L 11572436 exon CG33267 + chr3L_7_11565001 chr3L_11565001 RAL-812 885 chr3L 11579556 11579583 chr3L 11579662 11579689 4 106 1.5 3.0 2.2 1.2 133 chr3L 11579556 intergenic CG43390 - chr3L 11579622 intergenic CG43390 - chr3L 11579689 intergenic CG43390 - chr3L_4_11575001 chr3L_11575001 RAL-812 886 chr3L 11587919 11587953 chr3L 11587995 11588029 8 76 1.0 0.0 0.5 5.3 110 chr3L 11587919 intergenic rt - chr3L 11587974 intergenic rt - chr3L 11588029 intergenic rt - chr3L_8_11585001 chr3L_11585001 RAL-812 887 chr3L 11588735 11588759 chr3L 11588891 11588915 9 156 2.0 5.5 3.8 1.9 180 chr3L 11588735 intergenic not near genes chr3L 11588825 intergenic not near genes chr3L 11588915 intergenic not near genes chr3L_9_11585001 chr3L_11585001 RAL-812 888 chr3L 11723081 11723111 chr3L 11727876 11727906 Doc 10 4795 2.5 0.5 1.5 4.0 4825 chr3L 11723081 3` UTR Bmcp + chr3L 11725494 intron Bmcp + chr3L 11727906 3` UTR Bmcp + chr3L_10_11725001 chr3L_11725001 RAL-812 889 chr3L 11729680 11729705 chr3L 11729756 11729781 7 76 3.5 3.0 3.2 1.7 101 chr3L 11729680 exon CG32088 + chr3L 11729730 intron CG32088 + chr3L 11729781 exon CG32088 + chr3L_7_11725001 chr3L_11725001 RAL-812 890 chr3L 11744013 11744041 chr3L 11744121 11744149 9 107 5.5 0.0 2.8 2.4 136 chr3L 11744013 exon CG6024 - chr3L 11744081 intron CG6024 - chr3L 11744149 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-812 891 chr3L 11864561 11864568 chr3L 11865851 11865863 pogo 5 1293 4.0 4.0 4.0 1.0 1302 chr3L 11864561 intron CG44837 - chr3L 11865212 intron CG44837 - chr3L 11865863 intron CG44837 - chr3L_5_11865001 chr3L_11865001 RAL-812 892 chr3L 11864571 11864582 chr3L 11865850 11865877 pogo 6 1291 3.0 4.0 3.5 1.3 1306 chr3L 11864571 intron CG44837 - chr3L 11865224 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-812 893 chr3L 11936613 11936634 chr3L 11936687 11936714 5 75 1.5 2.5 2.0 1.7 101 chr3L 11936613 intron CG44837 - chr3L 11936664 intron CG44837 - chr3L 11936714 intron CG44837 - chr3L_5_11935001 chr3L_11935001 RAL-812 894 chr3L 12019327 12019343 chr3L 12019440 12019456 8 113 1.5 3.5 2.5 2.3 129 chr3L 12019327 intron rols - chr3L 12019392 intron rols - chr3L 12019456 intron rols - chr3L_8_12015001 chr3L_12015001 RAL-812 895 chr3L 12034884 12034916 chr3L 12034961 12034993 6 77 0.5 1.0 0.8 3.3 109 chr3L 12034884 intron rols - chr3L 12034938 intron rols - chr3L 12034993 intron rols - chr3L_6_12030001 chr3L_12030001 RAL-812 896 chr3L 12052706 12052736 chr3L 12052795 12052825 6 89 2.0 3.5 2.8 1.6 119 chr3L 12052706 intron rols - chr3L 12052766 intron rols - chr3L 12052825 intron rols - chr3L_6_12050001 chr3L_12050001 RAL-812 897 chr3L 12304093 12304114 chr3L 12304169 12304189 6 75 3.5 4.5 4.0 1.2 96 chr3L 12304093 intergenic not near genes chr3L 12304141 intergenic not near genes chr3L 12304189 intergenic not near genes chr3L_6_12300001 chr3L_12300001 RAL-812 898 chr3L 12352135 12352157 chr3L 12352224 12352255 16 94 3.5 3.0 3.2 3.8 120 chr3L 12352135 intergenic not near genes chr3L 12352195 intergenic not near genes chr3L 12352255 intergenic not near genes chr3L_16_12350001 chr3L_12350001 RAL-812 899 chr3L 12353941 12353953 chr3L 12354030 12354042 7 88 1.0 3.0 2.0 2.3 101 chr3L 12353941 intergenic not near genes chr3L 12353992 intergenic not near genes chr3L 12354042 intergenic not near genes chr3L_7_12350001 chr3L_12350001 RAL-812 900 chr3L 12371093 12371106 chr3L 12371187 12371205 6 94 5.5 1.0 3.2 1.4 112 chr3L 12371093 intron Ncc69 - chr3L 12371149 intron Ncc69 - chr3L 12371205 intron Ncc69 - chr3L_6_12370001 chr3L_12370001 RAL-812 901 chr3L 12460327 12460339 chr3L 12460404 12460416 5 77 0.0 2.0 1.0 2.5 89 chr3L 12460327 intergenic not near genes chr3L 12460372 intergenic not near genes chr3L 12460416 intergenic not near genes chr3L_5_12460001 chr3L_12460001 RAL-812 902 chr3L 12467252 12467284 chr3L 12467337 12467367 4 84 0.0 1.0 0.5 2.7 115 chr3L 12467252 intron eyg - chr3L 12467310 intron eyg - chr3L 12467367 intron eyg - chr3L_4_12465001 chr3L_12465001 RAL-812 903 chr3L 12488412 12488443 chr3L 12488539 12488570 11 127 2.5 2.0 2.2 3.4 158 chr3L 12488412 intron CG10660 - chr3L 12488491 intron CG10660 - chr3L 12488570 exon CG10660 - chr3L_11_12485001 chr3L_12485001 RAL-812 904 chr3L 12555627 12555655 chr3L 12555719 12555735 4 89 2.0 1.0 1.5 1.6 108 chr3L 12555627 intron sowah - chr3L 12555681 intron sowah - chr3L 12555735 intron sowah - chr3L_4_12555001 chr3L_12555001 RAL-812 905 chr3L 12688110 12688146 chr3L 12688187 12688222 8 75 1.5 1.5 1.5 3.2 112 chr3L 12688110 intergenic not near genes chr3L 12688166 intergenic not near genes chr3L 12688222 intergenic not near genes chr3L_8_12685001 chr3L_12685001 RAL-812 906 chr3L 12801978 12802013 chr3L 12802054 12802089 7 76 0.5 0.5 0.5 4.7 111 chr3L 12801978 intron Atg1 - chr3L 12802034 intron Atg1 - chr3L 12802089 intron Atg1 - chr3L_7_12800001 chr3L_12800001 RAL-812 907 chr3L 12833160 12833192 chr3L 12833518 12833550 6 357 0.5 1.0 0.8 3.3 390 chr3L 12833160 intron CG10960 - chr3L 12833355 intron CG10960 - chr3L 12833550 intron CG10960 - chr3L_6_12830001 chr3L_12830001 RAL-812 908 chr3L 12868029 12868055 chr3L 12868115 12868128 5 83 4.5 5.0 4.8 0.9 99 chr3L 12868029 intergenic not near genes chr3L 12868078 intergenic not near genes chr3L 12868128 intergenic not near genes chr3L_5_12865001 chr3L_12865001 RAL-812 909 chr3L 12874927 12874958 chr3L 12877219 12877250 jockey 11 2292 0.0 1.0 0.5 7.3 2323 chr3L 12874927 intergenic not near genes chr3L 12876088 intergenic not near genes chr3L 12877250 intergenic not near genes chr3L_11_12875001 chr3L_12875001 RAL-812 910 chr3L 12894799 12894821 chr3L 12894877 12894899 6 78 4.0 3.0 3.5 1.3 100 chr3L 12894799 intergenic CG14118 + chr3L 12894849 intergenic CG14118 + chr3L 12894899 intergenic CG14118 + chr3L_6_12890001 chr3L_12890001 RAL-812 911 chr3L 12919278 12919303 chr3L 12924747 12924776 Rt1c 8 5472 7.5 5.0 6.2 1.1 5498 chr3L 12919278 intergenic not near genes chr3L 12922027 intergenic not near genes chr3L 12924776 intergenic not near genes chr3L_8_12920001 chr3L_12920001 RAL-812 912 chr3L 12957791 12957810 chr3L 12962271 12962292 copia 6 4482 1.5 2.5 2.0 2.0 4501 chr3L 12957791 intergenic not near genes chr3L 12960042 intergenic not near genes chr3L 12962292 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-812 913 chr3L 12980518 12980552 chr3L 12980606 12980638 12 88 3.0 0.0 1.5 4.8 120 chr3L 12980518 intergenic not near genes chr3L 12980578 intergenic not near genes chr3L 12980638 intergenic not near genes chr3L_12_12980001 chr3L_12980001 RAL-812 914 chr3L 13008823 13008827 chr3L 13008960 13008985 5 153 1.5 5.5 3.5 1.1 162 chr3L 13008823 exon CG14117 + chr3L 13008904 intron CG14117 + chr3L 13008985 exon CG14117 + chr3L_5_13005001 chr3L_13005001 RAL-812 915 chr3L 13073805 13073820 chr3L 13073908 13073922 9 103 6.0 5.5 5.8 1.3 117 chr3L 13073805 intergenic not near genes chr3L 13073864 intergenic not near genes chr3L 13073922 intergenic not near genes chr3L_9_13070001 chr3L_13070001 RAL-812 916 chr3L 13073826 13073837 chr3L 13073904 13073931 5 96 3.0 3.0 3.0 1.2 105 chr3L 13073826 intergenic not near genes chr3L 13073878 intergenic not near genes chr3L 13073931 intergenic not near genes chr3L_5_13070001 chr3L_13070001 RAL-812 917 chr3L 13074395 13074420 chr3L 13074479 13074479 10 78 4.5 2.5 3.5 2.2 84 chr3L 13074395 intergenic not near genes chr3L 13074437 intergenic not near genes chr3L 13074479 intergenic not near genes chr3L_10_13070001 chr3L_13070001 RAL-812 918 chr3L 13085056 13085078 chr3L 13085134 13085157 7 78 1.5 1.5 1.5 2.8 101 chr3L 13085056 intergenic not near genes chr3L 13085106 intergenic not near genes chr3L 13085157 intergenic not near genes chr3L_7_13085001 chr3L_13085001 RAL-812 919 chr3L 13144118 13144149 chr3L 13144195 13144226 6 77 2.0 1.5 1.8 2.1 108 chr3L 13144118 intergenic not near genes chr3L 13144172 intergenic not near genes chr3L 13144226 intergenic not near genes chr3L_6_13140001 chr3L_13140001 RAL-812 920 chr3L 13161811 13161832 chr3L 13162097 13162108 7 283 2.0 2.5 2.2 2.2 297 chr3L 13161811 intergenic not near genes chr3L 13161960 intergenic not near genes chr3L 13162108 intergenic not near genes chr3L_7_13160001 chr3L_13160001 RAL-812 921 chr3L 13311800 13311815 chr3L 13311878 13311893 5 78 1.5 3.5 2.5 1.4 93 chr3L 13311800 intergenic not near genes chr3L 13311846 intergenic not near genes chr3L 13311893 intergenic not near genes chr3L_5_13310001 chr3L_13310001 RAL-812 922 chr3L 13400529 13400546 chr3L 13400604 13400622 5 76 1.5 0.5 1.0 2.5 93 chr3L 13400529 intron sens - chr3L 13400576 intron sens - chr3L 13400622 intron sens - chr3L_5_13400001 chr3L_13400001 RAL-812 923 chr3L 13525158 13525190 chr3L 13532954 13532966 roo 9 7793 2.5 5.5 4.0 1.8 7808 chr3L 13525158 intergenic not near genes chr3L 13529062 intergenic not near genes chr3L 13532966 intergenic not near genes chr3L_9_13525001 chr3L_13525001 RAL-812 924 chr3L 13595026 13595040 chr3L 13595106 13595118 5 79 3.0 3.0 3.0 1.2 92 chr3L 13595026 intron bru-3 - chr3L 13595072 intron bru-3 - chr3L 13595118 intron bru-3 - chr3L_5_13595001 chr3L_13595001 RAL-812 925 chr3L 13626695 13626719 chr3L 13626778 13626803 5 83 2.0 2.5 2.2 1.6 108 chr3L 13626695 intron bru-3 - chr3L 13626749 intron bru-3 - chr3L 13626803 intron bru-3 - chr3L_5_13625001 chr3L_13625001 RAL-812 926 chr3L 13629528 13629542 chr3L 13629639 13629653 4 111 2.5 5.5 4.0 0.8 125 chr3L 13629528 intron bru-3 - chr3L 13629590 intron bru-3 - chr3L 13629653 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-812 927 chr3L 13633417 13633441 chr3L 13633771 13633795 11 353 4.0 4.0 4.0 2.2 378 chr3L 13633417 intron bru-3 - chr3L 13633606 intron bru-3 - chr3L 13633795 intron bru-3 - chr3L_11_13630001 chr3L_13630001 RAL-812 928 chr3L 13648894 13648922 chr3L 13648979 13649012 14 88 2.5 4.5 3.5 3.1 118 chr3L 13648894 intron bru-3 - chr3L 13648953 intron bru-3 - chr3L 13649012 intron bru-3 - chr3L_14_13645001 chr3L_13645001 RAL-812 929 chr3L 13722444 13722473 chr3L 13722522 13722551 6 72 1.0 3.0 2.0 2.0 107 chr3L 13722444 intron bru-3 - chr3L 13722498 intron bru-3 - chr3L 13722551 intron bru-3 - chr3L_6_13720001 chr3L_13720001 RAL-812 930 chr3L 13745299 13745306 chr3L 13745388 13745395 4 89 2.0 0.0 1.0 2.0 96 chr3L 13745299 intron bru-3 - chr3L 13745347 intron bru-3 - chr3L 13745395 intron bru-3 - chr3L_4_13745001 chr3L_13745001 RAL-812 931 chr3L 13833975 13834006 chr3L 13834087 13834120 6 113 1.0 3.5 2.2 1.9 145 chr3L 13833975 intergenic not near genes chr3L 13834048 intergenic not near genes chr3L 13834120 intergenic not near genes chr3L_6_13830001 chr3L_13830001 RAL-812 932 chr3L 13838934 13838948 chr3L 13839152 13839167 4 218 2.5 3.0 2.8 1.1 233 chr3L 13838934 intergenic not near genes chr3L 13839050 intergenic not near genes chr3L 13839167 intergenic not near genes chr3L_4_13835001 chr3L_13835001 RAL-812 933 chr3L 14036677 14036699 chr3L 14036770 14036792 4 93 4.0 1.5 2.8 1.1 115 chr3L 14036677 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036734 3` UTR,3` UTR pncr014:3L -,CG6661 + chr3L 14036792 3` UTR pncr014:3L - chr3L_4_14035001 chr3L_14035001 RAL-812 934 chr3L 14118955 14118967 chr3L 14119041 14119046 4 88 5.0 4.5 4.8 0.7 91 chr3L 14118955 intron Sox21b - chr3L 14119000 intron Sox21b - chr3L 14119046 intron Sox21b - chr3L_4_14115001 chr3L_14115001 RAL-812 935 chr3L 14196415 14196442 chr3L 14196500 14196526 8 85 1.0 1.5 1.2 3.6 111 chr3L 14196415 intron nuf + chr3L 14196470 intron nuf + chr3L 14196526 intron nuf + chr3L_8_14195001 chr3L_14195001 RAL-812 936 chr3L 14234469 14234491 chr3L 14234554 14234575 5 83 10.5 0.0 5.2 0.8 106 chr3L 14234469 exon CG7924 + chr3L 14234522 3` UTR CG7924 + chr3L 14234575 3` UTR CG7924 + chr3L_5_14230001 chr3L_14230001 RAL-812 937 chr3L 14239997 14240004 chr3L 14240094 14240100 4 96 1.0 6.0 3.5 0.9 103 chr3L 14239997 intergenic not near genes chr3L 14240048 intergenic not near genes chr3L 14240100 intergenic not near genes chr3L_4_14240001 chr3L_14240001 RAL-812 938 chr3L 14245569 14245591 chr3L 14245662 14245685 1360 9 94 7.0 1.0 4.0 1.8 116 chr3L 14245569 3` UTR CR44561 - chr3L 14245627 3` UTR CR44561 - chr3L 14245685 3` UTR CR44561 - chr3L_9_14245001 chr3L_14245001 RAL-812 939 chr3L 14295980 14296005 chr3L 14296466 14296483 roo 8 484 9.5 4.0 6.8 1.0 503 chr3L 14295980 intron fz + chr3L 14296232 intron fz + chr3L 14296483 intron fz + chr3L_8_14295001 chr3L_14295001 RAL-812 940 chr3L 14341412 14341416 chr3L 14341547 14341551 4 135 0.0 0.0 0.0 4.0 139 chr3L 14341412 intron fz + chr3L 14341482 intron fz + chr3L 14341551 intron fz + chr3L_4_14340001 chr3L_14340001 RAL-812 941 chr3L 14399176 14399193 chr3L 14399265 14399282 5 89 2.5 0.0 1.2 2.3 106 chr3L 14399176 intergenic not near genes chr3L 14399229 intergenic not near genes chr3L 14399282 intergenic not near genes chr3L_5_14395001 chr3L_14395001 RAL-812 942 chr3L 14411872 14411898 chr3L 14411951 14411977 10 79 1.5 3.0 2.2 3.1 105 chr3L 14411872 intron CG3919 + chr3L 14411924 intron CG3919 + chr3L 14411977 intron CG3919 + chr3L_10_14410001 chr3L_14410001 RAL-812 943 chr3L 14455368 14455371 chr3L 14455448 14455452 5 81 4.0 0.0 2.0 1.7 84 chr3L 14455368 intron bbg - chr3L 14455410 intron bbg - chr3L 14455452 intron bbg - chr3L_5_14455001 chr3L_14455001 RAL-812 944 chr3L 14468451 14468469 chr3L 14473657 14473675 copia 4 5206 2.5 1.5 2.0 1.3 5224 chr3L 14468451 intron bbg - chr3L 14471063 intron bbg - chr3L 14473675 intron bbg - chr3L_4_14470001 chr3L_14470001 RAL-812 945 chr3L 14522099 14522128 chr3L 14522198 14522227 7 99 1.0 2.0 1.5 2.8 128 chr3L 14522099 intron bbg - chr3L 14522163 intron bbg - chr3L 14522227 intron bbg - chr3L_7_14520001 chr3L_14520001 RAL-812 946 chr3L 14596126 14596140 chr3L 14596206 14596219 4 80 0.0 0.0 0.0 4.0 93 chr3L 14596126 intron HGTX - chr3L 14596172 intron HGTX - chr3L 14596219 intron HGTX - chr3L_4_14595001 chr3L_14595001 RAL-812 947 chr3L 14635706 14635734 chr3L 14635784 14635812 6 79 3.5 2.5 3.0 1.5 106 chr3L 14635706 intron dlp + chr3L 14635759 intron dlp + chr3L 14635812 intron dlp + chr3L_6_14635001 chr3L_14635001 RAL-812 948 chr3L 14662165 14662183 chr3L 14662257 14662275 7 91 4.0 4.5 4.2 1.3 110 chr3L 14662165 intron dlp + chr3L 14662220 intron dlp + chr3L 14662275 intron dlp + chr3L_7_14660001 chr3L_14660001 RAL-812 949 chr3L 14676043 14676068 chr3L 14676116 14676147 13 74 3.0 3.5 3.2 3.1 104 chr3L 14676043 intron,intron ome +,CG4914 - chr3L 14676095 intron,intron ome +,CG4914 - chr3L 14676147 intron,intron ome +,CG4914 - chr3L_13_14675001 chr3L_14675001 RAL-812 950 chr3L 14721186 14721208 chr3L 14723028 14723039 Rt1c 7 1839 2.5 2.5 2.5 2.0 1853 chr3L 14721186 intron ome + chr3L 14722112 intron ome + chr3L 14723039 intron ome + chr3L_7_14720001 chr3L_14720001 RAL-812 951 chr3L 14741143 14741166 chr3L 14741221 14741243 5 77 2.0 3.0 2.5 1.4 100 chr3L 14741143 intron ome + chr3L 14741193 intron ome + chr3L 14741243 intron ome + chr3L_5_14740001 chr3L_14740001 RAL-812 952 chr3L 14838622 14838653 chr3L 14838702 14838711 12 78 1.0 2.0 1.5 4.8 89 chr3L 14838622 intron CG17839 + chr3L 14838666 intron CG17839 + chr3L 14838711 intron CG17839 + chr3L_12_14835001 chr3L_14835001 RAL-812 953 chr3L 14844260 14844284 chr3L 14844351 14844375 4 90 1.5 1.5 1.5 1.6 115 chr3L 14844260 intron CG17839 + chr3L 14844318 intron CG17839 + chr3L 14844375 intron CG17839 + chr3L_4_14840001 chr3L_14840001 RAL-812 954 chr3L 14912185 14912208 chr3L 14912267 14912290 7 82 2.0 3.5 2.8 1.8 105 chr3L 14912185 intron DCX-EMAP + chr3L 14912238 intron DCX-EMAP + chr3L 14912290 intron DCX-EMAP + chr3L_7_14910001 chr3L_14910001 RAL-812 955 chr3L 14917662 14917690 chr3L 14917742 14917773 11 82 4.5 2.5 3.5 2.4 111 chr3L 14917662 intron DCX-EMAP + chr3L 14917718 intron DCX-EMAP + chr3L 14917773 intron DCX-EMAP + chr3L_11_14915001 chr3L_14915001 RAL-812 956 chr3L 14973632 14973656 chr3L 14973711 14973736 9 79 3.0 1.5 2.2 2.8 104 chr3L 14973632 intergenic Brd + chr3L 14973684 intergenic Brd + chr3L 14973736 intergenic not near genes chr3L_9_14970001 chr3L_14970001 RAL-812 957 chr3L 15085055 15085063 chr3L 15086221 15086227 1360 4 1165 4.5 4.5 4.5 0.7 1172 chr3L 15085055 intron cp309 - chr3L 15085641 intron cp309 - chr3L 15086227 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-812 958 chr3L 15086691 15086718 chr3L 15086941 15086968 9 250 2.0 1.0 1.5 3.6 277 chr3L 15086691 intron cp309 - chr3L 15086830 intron cp309 - chr3L 15086968 intron cp309 - chr3L_9_15085001 chr3L_15085001 RAL-812 959 chr3L 15257433 15257445 chr3L 15257646 15257658 7 213 3.0 1.5 2.2 2.2 225 chr3L 15257433 intergenic not near genes chr3L 15257546 intergenic not near genes chr3L 15257658 intergenic not near genes chr3L_7_15255001 chr3L_15255001 RAL-812 960 chr3L 15261885 15261918 chr3L 15261986 15262019 12 99 3.0 3.0 3.0 3.0 134 chr3L 15261885 intergenic not near genes chr3L 15261952 intergenic not near genes chr3L 15262019 intergenic not near genes chr3L_12_15260001 chr3L_15260001 RAL-812 961 chr3L 15284571 15284599 chr3L 15284650 15284678 4 78 4.5 5.0 4.8 0.7 107 chr3L 15284571 intergenic not near genes chr3L 15284624 intergenic not near genes chr3L 15284678 intergenic not near genes chr3L_4_15280001 chr3L_15280001 RAL-812 962 chr3L 15315667 15315702 chr3L 15316844 15316878 17 1177 2.0 5.5 3.8 3.5 1211 chr3L 15315667 intergenic not near genes chr3L 15316272 intergenic not near genes chr3L 15316878 intergenic not near genes chr3L_17_15315001 chr3L_15315001 RAL-812 963 chr3L 15333228 15333244 chr3L 15333312 15333328 5 83 5.0 3.5 4.2 1.0 100 chr3L 15333228 intergenic CR43247 + chr3L 15333278 intergenic CR43247 + chr3L 15333328 intergenic CR43247 + chr3L_5_15330001 chr3L_15330001 RAL-812 964 chr3L 15406044 15406055 chr3L 15406107 15406137 4 74 1.0 4.0 2.5 1.1 93 chr3L 15406044 intergenic not near genes chr3L 15406090 intergenic not near genes chr3L 15406137 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-812 965 chr3L 15444650 15444685 chr3L 15444744 15444778 6 94 2.5 3.5 3.0 1.5 128 chr3L 15444650 intergenic not near genes chr3L 15444714 intergenic not near genes chr3L 15444778 intergenic not near genes chr3L_6_15440001 chr3L_15440001 RAL-812 966 chr3L 15466037 15466138 chr3L 15466119 15466234 6 89 0.0 0.0 0.0 6.0 197 chr3L 15466037 intergenic not near genes chr3L 15466136 intergenic not near genes chr3L 15466234 intergenic not near genes chr3L_6_15465001 chr3L_15465001 RAL-812 967 chr3L 15691413 15691444 chr3L 15691494 15691499 5 69 1.0 1.0 1.0 2.5 86 chr3L 15691413 intron CG34451 - chr3L 15691456 intron CG34451 - chr3L 15691499 intron CG34451 - chr3L_5_15690001 chr3L_15690001 RAL-812 968 chr3L 15742961 15742988 chr3L 15743122 15743148 6 161 1.5 0.0 0.8 3.3 187 chr3L 15742961 intergenic not near genes chr3L 15743054 intergenic not near genes chr3L 15743148 intergenic not near genes chr3L_6_15740001 chr3L_15740001 RAL-812 969 chr3L 15756878 15756908 chr3L 15756961 15756991 5 79 4.5 0.0 2.2 1.6 113 chr3L 15756878 intergenic not near genes chr3L 15756934 intergenic not near genes chr3L 15756991 intergenic not near genes chr3L_5_15755001 chr3L_15755001 RAL-812 970 chr3L 15840435 15840469 chr3L 15840522 15840554 4 86 1.0 1.5 1.2 1.8 119 chr3L 15840435 intron CG32150 - chr3L 15840494 intron CG32150 - chr3L 15840554 intron CG32150 - chr3L_4_15840001 chr3L_15840001 RAL-812 971 chr3L 15892509 15892526 chr3L 15893701 15893719 7 1192 5.0 7.5 6.2 1.0 1210 chr3L 15892509 intron pHCl - chr3L 15893114 intron pHCl - chr3L 15893719 5` UTR pHCl - chr3L_7_15890001 chr3L_15890001 RAL-812 972 chr3L 15899232 15899263 chr3L 15899790 15899801 jockey 4 542 2.0 4.5 3.2 1.0 569 chr3L 15899232 intergenic pHCl - chr3L 15899516 intergenic pHCl - chr3L 15899801 intergenic sff - chr3L_4_15895001 chr3L_15895001 RAL-812 973 chr3L 16159268 16159300 chr3L 16159342 16159377 10 76 2.5 3.5 3.0 2.5 109 chr3L 16159268 intron CG5151 - chr3L 16159322 intron CG5151 - chr3L 16159377 intron CG5151 - chr3L_10_16155001 chr3L_16155001 RAL-812 974 chr3L 16162600 16162624 chr3L 16162685 16162707 9 84 2.5 3.0 2.8 2.4 107 chr3L 16162600 intron CG5151 - chr3L 16162654 intron CG5151 - chr3L 16162707 intron CG5151 - chr3L_9_16160001 chr3L_16160001 RAL-812 975 chr3L 16184087 16184119 chr3L 16188931 16188949 X-element 16 4843 1.0 2.0 1.5 6.4 4862 chr3L 16184087 intergenic not near genes chr3L 16186518 intergenic not near genes chr3L 16188949 intergenic not near genes chr3L_16_16185001 chr3L_16185001 RAL-812 976 chr3L 16322823 16322854 chr3L 16322912 16322933 15 89 3.0 6.0 4.5 2.7 110 chr3L 16322823 intergenic not near genes chr3L 16322878 intergenic not near genes chr3L 16322933 intergenic not near genes chr3L_15_16320001 chr3L_16320001 RAL-812 977 chr3L 16450021 16450051 chr3L 16450106 16450136 4 84 0.5 1.5 1.0 2.0 115 chr3L 16450021 intron,intron CG33158 +,dsx-c73A - chr3L 16450078 intron,intron CG33158 +,dsx-c73A - chr3L 16450136 intron,intron CG33158 +,dsx-c73A - chr3L_4_16450001 chr3L_16450001 RAL-812 978 chr3L 16457533 16457543 chr3L 16457628 16457638 7 95 3.0 2.0 2.5 2.0 105 chr3L 16457533 intron CG33158 + chr3L 16457586 intron CG33158 + chr3L 16457638 intron CG33158 + chr3L_7_16455001 chr3L_16455001 RAL-812 979 chr3L 16493985 16494010 chr3L 16494501 16494501 jockey 11 514 6.0 7.5 6.8 1.4 516 chr3L 16493985 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494243 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494501 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_11_16490001 chr3L_16490001 RAL-812 980 chr3L 16509398 16509424 chr3L 16509549 16509575 6 151 1.5 2.5 2.0 2.0 177 chr3L 16509398 intron CG43373 - chr3L 16509486 intron CG43373 - chr3L 16509575 intron CG43373 - chr3L_6_16505001 chr3L_16505001 RAL-812 981 chr3L 16515331 16515343 chr3L 16515415 16515427 6 84 2.0 0.5 1.2 2.7 96 chr3L 16515331 intron CG43373 - chr3L 16515379 intron CG43373 - chr3L 16515427 intron CG43373 - chr3L_6_16515001 chr3L_16515001 RAL-812 982 chr3L 16610691 16610709 chr3L 16610776 16610794 5 85 1.0 3.0 2.0 1.7 103 chr3L 16610691 3` UTR Su(P) - chr3L 16610742 exon Su(P) - chr3L 16610794 exon Su(P) - chr3L_5_16610001 chr3L_16610001 RAL-812 983 chr3L 16643654 16643681 chr3L 16643735 16643763 8 81 1.5 3.5 2.5 2.3 109 chr3L 16643654 intron Abl - chr3L 16643708 intron Abl - chr3L 16643763 intron Abl - chr3L_8_16640001 chr3L_16640001 RAL-812 984 chr3L 16708522 16708540 chr3L 16708636 16708651 4 113 1.0 3.0 2.0 1.3 129 chr3L 16708522 intron,intron Lasp -,CG43954 - chr3L 16708586 intron,intron Lasp -,CG43954 - chr3L 16708651 intron,intron Lasp -,CG43954 - chr3L_4_16705001 chr3L_16705001 RAL-812 985 chr3L 16754428 16754455 chr3L 16754507 16754534 7 79 1.5 2.0 1.8 2.5 106 chr3L 16754428 intergenic not near genes chr3L 16754481 intergenic not near genes chr3L 16754534 intergenic not near genes chr3L_7_16750001 chr3L_16750001 RAL-812 986 chr3L 16757642 16757668 chr3L 16757732 16757758 4 90 1.0 0.5 0.8 2.2 116 chr3L 16757642 intergenic not near genes chr3L 16757700 intergenic not near genes chr3L 16757758 intergenic not near genes chr3L_4_16755001 chr3L_16755001 RAL-812 987 chr3L 16845024 16845045 chr3L 16845137 16845158 4 112 2.5 2.5 2.5 1.1 134 chr3L 16845024 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845091 intergenic CG9669 -,CG9715 + chr3L 16845158 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-812 988 chr3L 16893064 16893094 chr3L 16893379 16893409 13 315 3.0 4.0 3.5 2.9 345 chr3L 16893064 intron Lmpt + chr3L 16893236 intron Lmpt + chr3L 16893409 intron Lmpt + chr3L_13_16890001 chr3L_16890001 RAL-812 989 chr3L 16941400 16941432 chr3L 16941501 16941533 4 101 2.0 0.0 1.0 2.0 133 chr3L 16941400 intron Cpr73D - chr3L 16941466 intron Cpr73D - chr3L 16941533 intron Cpr73D - chr3L_4_16940001 chr3L_16940001 RAL-812 990 chr3L 16945728 16945761 chr3L 16954880 16954914 roo 19 9147 2.5 3.0 2.8 5.0 9186 chr3L 16945728 exon Obp73a + chr3L 16950321 intergenic not near genes chr3L 16954914 5` UTR Nc73EF + chr3L_19_16950001 chr3L_16950001 RAL-812 991 chr3L 17067744 17067763 chr3L 17067876 17067895 6 132 4.0 1.0 2.5 1.7 151 chr3L 17067744 intron Rbp6 - chr3L 17067820 intron Rbp6 - chr3L 17067895 intron Rbp6 - chr3L_6_17065001 chr3L_17065001 RAL-812 992 chr3L 17085013 17085033 chr3L 17094162 17094182 roo 7 9149 1.5 4.5 3.0 1.8 9169 chr3L 17085013 intron Rbp6 - chr3L 17089598 intron Rbp6 - chr3L 17094182 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-812 993 chr3L 17099166 17099190 chr3L 17099284 17099311 7 120 1.5 3.0 2.2 2.2 145 chr3L 17099166 intron Rbp6 - chr3L 17099238 intron Rbp6 - chr3L 17099311 intron Rbp6 - chr3L_7_17095001 chr3L_17095001 RAL-812 994 chr3L 17117103 17117131 chr3L 17117188 17117215 9 83 1.5 3.0 2.2 2.8 112 chr3L 17117103 intron Rbp6 - chr3L 17117159 intron Rbp6 - chr3L 17117215 intron Rbp6 - chr3L_9_17115001 chr3L_17115001 RAL-812 995 chr3L 17149163 17149184 chr3L 17149244 17149263 9 81 3.5 0.0 1.8 3.2 100 chr3L 17149163 intron Rbp6 - chr3L 17149213 intron Rbp6 - chr3L 17149263 intron Rbp6 - chr3L_9_17145001 chr3L_17145001 RAL-812 996 chr3L 17164384 17164392 chr3L 17164521 17164532 5 138 3.5 0.0 1.8 1.8 148 chr3L 17164384 intron Rbp6 - chr3L 17164458 intron Rbp6 - chr3L 17164532 intron Rbp6 - chr3L_5_17160001 chr3L_17160001 RAL-812 997 chr3L 17167981 17168004 chr3L 17168079 17168109 7 104 6.0 2.5 4.2 1.3 128 chr3L 17167981 intron Rbp6 - chr3L 17168045 intron Rbp6 - chr3L 17168109 intron Rbp6 - chr3L_7_17165001 chr3L_17165001 RAL-812 998 chr3L 17265309 17265331 chr3L 17265388 17265410 8 77 1.5 4.5 3.0 2.0 101 chr3L 17265309 intergenic CG13723 + chr3L 17265360 intergenic CG13723 + chr3L 17265410 intergenic CG13723 + chr3L_8_17265001 chr3L_17265001 RAL-812 999 chr3L 17295217 17295246 chr3L 17295293 17295314 8 75 4.0 2.5 3.2 1.9 97 chr3L 17295217 intergenic not near genes chr3L 17295266 intergenic not near genes chr3L 17295314 intergenic not near genes chr3L_8_17295001 chr3L_17295001 RAL-812 1000 chr3L 17332886 17332906 chr3L 17332968 17332988 5 81 3.0 8.5 5.8 0.7 102 chr3L 17332886 intergenic not near genes chr3L 17332937 intergenic not near genes chr3L 17332988 intergenic not near genes chr3L_5_17330001 chr3L_17330001 RAL-812 1001 chr3L 17446562 17446574 chr3L 17446661 17446689 10 106 4.0 3.0 3.5 2.2 127 chr3L 17446562 intron CG18265 + chr3L 17446626 intron CG18265 + chr3L 17446689 intron CG18265 + chr3L_10_17445001 chr3L_17445001 RAL-812 1002 chr3L 17474910 17474941 chr3L 17474987 17475018 6 76 0.5 2.0 1.2 2.7 108 chr3L 17474910 intergenic CG7580 +,CG7589 + chr3L 17474964 intergenic CG7580 +,CG7589 + chr3L 17475018 intergenic CG7580 + chr3L_6_17470001 chr3L_17470001 RAL-812 1003 chr3L 17510744 17510763 chr3L 17510828 17510847 10 84 3.0 4.0 3.5 2.2 103 chr3L 17510744 exon Oatp74D + chr3L 17510796 intron Oatp74D + chr3L 17510847 intron Oatp74D + chr3L_10_17510001 chr3L_17510001 RAL-812 1004 chr3L 17516981 17516999 chr3L 17524539 17524540 412 5 7554 5.5 4.5 5.0 0.8 7559 chr3L 17516981 intron CG7564 + chr3L 17520760 intron CG7564 + chr3L 17524540 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-812 1005 chr3L 17580585 17580602 chr3L 17580761 17580778 7 176 3.5 0.0 1.8 2.5 193 chr3L 17580585 intron Eip74EF - chr3L 17580682 intron Eip74EF - chr3L 17580778 intron Eip74EF - chr3L_7_17580001 chr3L_17580001 RAL-812 1006 chr3L 17713186 17713219 chr3L 17713346 17713379 9 159 6.5 3.0 4.8 1.6 193 chr3L 17713186 intron Ccn + chr3L 17713282 intron Ccn + chr3L 17713379 intron Ccn + chr3L_9_17710001 chr3L_17710001 RAL-812 1007 chr3L 17758045 17758066 chr3L 17758121 17758142 5 75 2.0 6.5 4.2 1.0 97 chr3L 17758045 intron,intron Adgf-A -,Msi - chr3L 17758094 intron,intron Adgf-A -,Msi - chr3L 17758142 intron,intron,5` UTR Adgf-A -,Msi -,CG32182 + chr3L_5_17755001 chr3L_17755001 RAL-812 1008 chr3L 17773206 17773239 chr3L 17773303 17773336 7 97 0.0 3.0 1.5 2.8 130 chr3L 17773206 intergenic not near genes chr3L 17773271 intergenic not near genes chr3L 17773336 intergenic not near genes chr3L_7_17770001 chr3L_17770001 RAL-812 1009 chr3L 17782355 17782376 chr3L 17782631 17782652 6 274 1.0 1.0 1.0 3.0 297 chr3L 17782355 intergenic not near genes chr3L 17782504 intergenic not near genes chr3L 17782652 intergenic not near genes chr3L_6_17780001 chr3L_17780001 RAL-812 1010 chr3L 17790194 17790228 chr3L 17790307 17790345 9 114 5.0 4.0 4.5 1.6 151 chr3L 17790194 intergenic not near genes chr3L 17790270 intergenic not near genes chr3L 17790345 intergenic not near genes chr3L_9_17790001 chr3L_17790001 RAL-812 1011 chr3L 17790626 17790636 chr3L 17790891 17790901 5 265 1.5 3.0 2.2 1.6 275 chr3L 17790626 intergenic CG42815 - chr3L 17790764 intergenic CG42815 - chr3L 17790901 intergenic CG42815 - chr3L_5_17790001 chr3L_17790001 RAL-812 1012 chr3L 17797437 17797464 chr3L 17797665 17797692 5 227 1.5 0.0 0.8 2.8 255 chr3L 17797437 intron CG42816 - chr3L 17797564 5` UTR CG42816 - chr3L 17797692 intergenic NUCB1 -,CG42816 - chr3L_5_17795001 chr3L_17795001 RAL-812 1013 chr3L 17799568 17799585 chr3L 17799646 17799666 4 80 2.5 0.5 1.5 1.6 98 chr3L 17799568 intron NUCB1 - chr3L 17799617 intron NUCB1 - chr3L 17799666 intron NUCB1 - chr3L_4_17795001 chr3L_17795001 RAL-812 1014 chr3L 17827289 17827317 chr3L 17827380 17827408 4 91 1.5 3.0 2.2 1.2 119 chr3L 17827289 intron Grd + chr3L 17827348 intron Grd + chr3L 17827408 intron Grd + chr3L_4_17825001 chr3L_17825001 RAL-812 1015 chr3L 17837623 17837652 chr3L 17837711 17837740 15 88 3.0 6.0 4.5 2.7 117 chr3L 17837623 exon Grd + chr3L 17837682 intron Grd + chr3L 17837740 intron Grd + chr3L_15_17835001 chr3L_17835001 RAL-812 1016 chr3L 17904848 17904858 chr3L 17905235 17905246 4 388 4.5 1.0 2.8 1.1 398 chr3L 17904848 intron Prestin - chr3L 17905047 intron Prestin - chr3L 17905246 intron Prestin - chr3L_4_17905001 chr3L_17905001 RAL-812 1017 chr3L 18029957 18029979 chr3L 18030034 18030056 4 77 0.5 0.0 0.2 3.3 99 chr3L 18029957 intron Eip75B - chr3L 18030006 intron Eip75B - chr3L 18030056 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-812 1018 chr3L 18106252 18106280 chr3L 18106371 18106399 6 118 4.0 0.0 2.0 2.0 147 chr3L 18106252 intergenic CG13698 -,mRpS26 + chr3L 18106326 intergenic CG13698 -,mRpS26 + chr3L 18106399 intergenic mRpS26 +,CG13698 - chr3L_6_18105001 chr3L_18105001 RAL-812 1019 chr3L 18221110 18221131 chr3L 18221191 18221209 5 80 0.0 0.0 0.0 5.0 99 chr3L 18221110 intergenic not near genes chr3L 18221160 intergenic not near genes chr3L 18221209 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-812 1020 chr3L 18223164 18223184 chr3L 18223247 18223265 6 83 3.0 0.0 1.5 2.4 101 chr3L 18223164 intergenic not near genes chr3L 18223214 intergenic not near genes chr3L 18223265 intergenic not near genes chr3L_6_18220001 chr3L_18220001 RAL-812 1021 chr3L 18248951 18248988 chr3L 18249049 18249086 16 98 0.5 2.5 1.5 6.4 135 chr3L 18248951 intergenic not near genes chr3L 18249018 intergenic not near genes chr3L 18249086 intergenic not near genes chr3L_16_18245001 chr3L_18245001 RAL-812 1022 chr3L 18276097 18276107 chr3L 18276190 18276202 6 94 1.0 4.5 2.8 1.6 105 chr3L 18276097 intergenic not near genes chr3L 18276150 intergenic not near genes chr3L 18276202 intergenic not near genes chr3L_6_18275001 chr3L_18275001 RAL-812 1023 chr3L 18283931 18283963 chr3L 18284008 18284040 8 76 1.0 2.0 1.5 3.2 109 chr3L 18283931 intergenic not near genes chr3L 18283986 intergenic not near genes chr3L 18284040 intergenic not near genes chr3L_8_18280001 chr3L_18280001 RAL-812 1024 chr3L 18321084 18321105 chr3L 18321168 18321191 5 85 2.0 3.5 2.8 1.3 107 chr3L 18321084 intergenic not near genes chr3L 18321138 intergenic not near genes chr3L 18321191 intergenic not near genes chr3L_5_18320001 chr3L_18320001 RAL-812 1025 chr3L 18408737 18408761 chr3L 18408823 18408847 7 86 0.5 2.0 1.2 3.2 110 chr3L 18408737 intergenic not near genes chr3L 18408792 intergenic not near genes chr3L 18408847 intergenic not near genes chr3L_7_18405001 chr3L_18405001 RAL-812 1026 chr3L 9013689 9013692 chr3L 18417066 18417066 4 9403376 25.0 20.5 22.8 0.2 9403377 chr3L 9013689 intron Doc2 - chr3L 13715378 intron bru-3 - chr3L 18417066 intergenic not near genes chr3L_4_13715001 chr3L_13715001 RAL-812 1027 chr3L 18430263 18430293 chr3L 18430338 18430368 5 75 1.0 2.0 1.5 2.0 105 chr3L 18430263 intergenic not near genes chr3L 18430316 intergenic not near genes chr3L 18430368 intergenic not near genes chr3L_5_18430001 chr3L_18430001 RAL-812 1028 chr3L 18456283 18456303 chr3L 18456371 18456391 4 88 0.5 3.0 1.8 1.4 108 chr3L 18456283 intergenic CR44670 - chr3L 18456337 intergenic CR44670 - chr3L 18456391 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-812 1029 chr3L 18465571 18465607 chr3L 18465680 18465697 12 103 2.0 3.5 2.8 3.2 126 chr3L 18465571 intergenic not near genes chr3L 18465634 intergenic not near genes chr3L 18465697 intergenic not near genes chr3L_12_18465001 chr3L_18465001 RAL-812 1030 chr3L 18546704 18546736 chr3L 18546798 18546830 10 94 2.0 4.5 3.2 2.4 126 chr3L 18546704 intergenic not near genes chr3L 18546767 intergenic not near genes chr3L 18546830 intergenic not near genes chr3L_10_18545001 chr3L_18545001 RAL-812 1031 chr3L 18582220 18582249 chr3L 18582299 18582334 8 84 1.5 1.0 1.2 3.6 114 chr3L 18582220 intergenic not near genes chr3L 18582277 intergenic not near genes chr3L 18582334 intergenic not near genes chr3L_8_18580001 chr3L_18580001 RAL-812 1032 chr3L 18586574 18586596 chr3L 18586673 18586695 5 98 2.5 3.5 3.0 1.2 121 chr3L 18586574 intergenic not near genes chr3L 18586634 intergenic not near genes chr3L 18586695 intergenic not near genes chr3L_5_18585001 chr3L_18585001 RAL-812 1033 chr3L 18688950 18688973 chr3L 18689052 18689074 13 102 3.0 8.0 5.5 2.0 124 chr3L 18688950 intergenic not near genes chr3L 18689012 intergenic not near genes chr3L 18689074 intergenic not near genes chr3L_13_18685001 chr3L_18685001 RAL-812 1034 chr3L 18721770 18721805 chr3L 18721861 18721895 6 91 2.5 2.0 2.2 1.9 125 chr3L 18721770 intergenic CG12477 - chr3L 18721832 intergenic CG12477 - chr3L 18721895 3` UTR CG12477 - chr3L_6_18720001 chr3L_18720001 RAL-812 1035 chr3L 18772408 18772437 chr3L 18781088 18781118 roo 15 8681 1.0 3.0 2.0 5.0 8710 chr3L 18772408 intron ftz-f1 - chr3L 18776763 intron ftz-f1 - chr3L 18781118 intron ftz-f1 - chr3L_15_18775001 chr3L_18775001 RAL-812 1036 chr3L 18810144 18810168 chr3L 18810221 18810245 6 77 2.0 1.5 1.8 2.1 101 chr3L 18810144 intron CG14073 - chr3L 18810194 intron CG14073 - chr3L 18810245 intron CG14073 - chr3L_6_18810001 chr3L_18810001 RAL-812 1037 chr3L 18833785 18833814 chr3L 18834949 18834978 1360 5 1164 3.0 2.5 2.8 1.3 1193 chr3L 18833785 intron Indy - chr3L 18834382 intron Indy - chr3L 18834978 intron Indy - chr3L_5_18830001 chr3L_18830001 RAL-812 1038 chr3L 18916487 18916521 chr3L 18916593 18916627 13 100 4.5 1.5 3.0 3.2 140 chr3L 18916487 intergenic not near genes chr3L 18916557 intergenic not near genes chr3L 18916627 intergenic not near genes chr3L_13_18915001 chr3L_18915001 RAL-812 1039 chr3L 18933628 18933660 chr3L 18933721 18933753 5 93 1.0 1.0 1.0 2.5 125 chr3L 18933628 intron CG32204 - chr3L 18933690 intron CG32204 - chr3L 18933753 intron CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-812 1040 chr3L 18969549 18969575 chr3L 18969625 18969651 8 74 2.0 1.0 1.5 3.2 102 chr3L 18969549 intergenic not near genes chr3L 18969600 intergenic not near genes chr3L 18969651 intergenic not near genes chr3L_8_18965001 chr3L_18965001 RAL-812 1041 chr3L 19008845 19008871 chr3L 19009183 19009209 jockey 12 337 1.5 6.0 3.8 2.5 364 chr3L 19008845 intron nkd - chr3L 19009027 intron nkd - chr3L 19009209 intron nkd - chr3L_12_19005001 chr3L_19005001 RAL-812 1042 chr3L 19012855 19012886 chr3L 19012940 19012950 7 81 4.5 4.5 4.5 1.3 95 chr3L 19012855 intron nkd - chr3L 19012902 intron nkd - chr3L 19012950 intron nkd - chr3L_7_19010001 chr3L_19010001 RAL-812 1043 chr3L 19115646 19115670 chr3L 19115826 19115850 BS 12 179 6.0 3.5 4.8 2.1 204 chr3L 19115646 intron CG14082 - chr3L 19115748 intron CG14082 - chr3L 19115850 intron CG14082 - chr3L_12_19115001 chr3L_19115001 RAL-812 1044 chr3L 19117052 19117076 chr3L 19124487 19124523 mdg1 11 7442 3.5 3.5 3.5 2.4 7471 chr3L 19117052 intron CG14082 - chr3L 19120788 intron CG14082 - chr3L 19124523 intron CG14082 - chr3L_11_19120001 chr3L_19120001 RAL-812 1045 chr3L 19187323 19187344 chr3L 19187457 19187478 5 134 4.0 4.0 4.0 1.0 155 chr3L 19187323 intron fz2 - chr3L 19187400 intron fz2 - chr3L 19187478 intron fz2 - chr3L_5_19185001 chr3L_19185001 RAL-812 1046 chr3L 19208056 19208086 chr3L 19209430 19209460 Doc 13 1373 4.0 1.0 2.5 3.7 1404 chr3L 19208056 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209460 intron fz2 - chr3L_13_19205001 chr3L_19205001 RAL-812 1047 chr3L 19216514 19216538 chr3L 19216591 19216615 5 77 3.0 0.0 1.5 2.0 101 chr3L 19216514 intron fz2 - chr3L 19216564 intron fz2 - chr3L 19216615 intron fz2 - chr3L_5_19215001 chr3L_19215001 RAL-812 1048 chr3L 19228402 19228433 chr3L 19228495 19228526 13 92 1.5 1.5 1.5 5.2 124 chr3L 19228402 intron fz2 - chr3L 19228464 intron fz2 - chr3L 19228526 intron fz2 - chr3L_13_19225001 chr3L_19225001 RAL-812 1049 chr3L 19231354 19231381 chr3L 19231441 19231468 4 87 3.5 0.5 2.0 1.3 114 chr3L 19231354 intron fz2 - chr3L 19231411 intron fz2 - chr3L 19231468 intron fz2 - chr3L_4_19230001 chr3L_19230001 RAL-812 1050 chr3L 19426748 19426770 chr3L 19426826 19426830 7 74 7.5 2.0 4.8 1.2 82 chr3L 19426748 intergenic not near genes chr3L 19426789 intergenic not near genes chr3L 19426830 intergenic not near genes chr3L_7_19425001 chr3L_19425001 RAL-812 1051 chr3L 19527928 19527958 chr3L 19528005 19528036 11 78 1.5 2.0 1.8 3.9 108 chr3L 19527928 intergenic not near genes chr3L 19527982 intergenic not near genes chr3L 19528036 intergenic not near genes chr3L_11_19525001 chr3L_19525001 RAL-812 1052 chr3L 19848500 19848533 chr3L 19857690 19857723 roo 8 9190 4.0 2.5 3.2 1.9 9223 chr3L 19848500 intron Papss + chr3L 19853112 intron Papss + chr3L 19857723 intron Papss + chr3L_8_19850001 chr3L_19850001 RAL-812 1053 chr3L 19861824 19861850 chr3L 19863612 19863638 S-element 8 1788 1.0 2.5 1.8 2.9 1814 chr3L 19861824 5` UTR CR45433 + chr3L 19862731 intergenic not near genes chr3L 19863638 intergenic not near genes chr3L_8_19860001 chr3L_19860001 RAL-812 1054 chr3L 19961282 19961306 chr3L 19961493 19961517 6 210 3.5 5.5 4.5 1.1 235 chr3L 19961282 intron Ac76E + chr3L 19961400 intron Ac76E + chr3L 19961517 intron Ac76E + chr3L_6_19960001 chr3L_19960001 RAL-812 1055 chr3L 20030343 20030353 chr3L 20030423 20030433 4 79 1.5 4.0 2.8 1.1 90 chr3L 20030343 intergenic not near genes chr3L 20030388 intergenic not near genes chr3L 20030433 intergenic not near genes chr3L_4_20030001 chr3L_20030001 RAL-812 1056 chr3L 20113410 20113432 chr3L 20113497 20113519 9 87 1.0 1.5 1.2 4.1 109 chr3L 20113410 intergenic not near genes chr3L 20113464 intergenic not near genes chr3L 20113519 intergenic not near genes chr3L_9_20110001 chr3L_20110001 RAL-812 1057 chr3L 20113657 20113679 chr3L 20122914 20122936 roo 5 9257 1.0 0.5 0.8 2.8 9279 chr3L 20113657 intergenic not near genes chr3L 20118296 intergenic not near genes chr3L 20122936 intergenic not near genes chr3L_5_20115001 chr3L_20115001 RAL-812 1058 chr3L 20145560 20145587 chr3L 20145888 20145915 10 328 2.5 5.5 4.0 2.0 355 chr3L 20145560 intergenic not near genes chr3L 20145738 intergenic not near genes chr3L 20145915 intergenic not near genes chr3L_10_20145001 chr3L_20145001 RAL-812 1059 chr3L 20148297 20148309 chr3L 20148387 20148399 5 90 3.0 6.0 4.5 0.9 102 chr3L 20148297 intergenic not near genes chr3L 20148348 intergenic not near genes chr3L 20148399 intergenic not near genes chr3L_5_20145001 chr3L_20145001 RAL-812 1060 chr3L 20156167 20156189 chr3L 20156289 20156311 7 122 5.0 4.0 4.5 1.3 144 chr3L 20156167 intron CG42674 - chr3L 20156239 intron CG42674 - chr3L 20156311 intron CG42674 - chr3L_7_20155001 chr3L_20155001 RAL-812 1061 chr3L 20182343 20182366 chr3L 20182445 20182468 6 102 2.0 1.0 1.5 2.4 125 chr3L 20182343 intron CG42674 - chr3L 20182406 intron CG42674 - chr3L 20182468 intron CG42674 - chr3L_6_20180001 chr3L_20180001 RAL-812 1062 chr3L 20183421 20183440 chr3L 20183516 20183540 8 99 0.5 3.0 1.8 2.9 119 chr3L 20183421 intron CG42674 - chr3L 20183480 intron CG42674 - chr3L 20183540 intron CG42674 - chr3L_8_20180001 chr3L_20180001 RAL-812 1063 chr3L 20223349 20223365 chr3L 20223544 20223560 5 195 0.5 4.0 2.2 1.6 211 chr3L 20223349 intergenic CG17145 + chr3L 20223454 intergenic CG17145 +,CG17147 + chr3L 20223560 intergenic CG17145 +,CG17147 + chr3L_5_20220001 chr3L_20220001 RAL-812 1064 chr3L 20256653 20256669 chr3L 20256748 20256779 5 107 0.5 2.0 1.2 2.3 126 chr3L 20256653 intron rdgC + chr3L 20256716 intron rdgC + chr3L 20256779 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-812 1065 chr3L 20257334 20257361 chr3L 20258454 20258481 pogo 6 1120 1.5 3.0 2.2 1.9 1147 chr3L 20257334 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258481 intron rdgC + chr3L_6_20255001 chr3L_20255001 RAL-812 1066 chr3L 20451283 20451297 chr3L 20451524 20451538 7 241 4.0 2.0 3.0 1.8 255 chr3L 20451283 intron CG5199 - chr3L 20451410 intron CG5199 - chr3L 20451538 intron CG5199 - chr3L_7_20450001 chr3L_20450001 RAL-812 1067 chr3L 20476759 20476784 chr3L 20484357 20484383 springer 5 7599 2.0 0.0 1.0 2.5 7624 chr3L 20476759 3` UTR isoQC + chr3L 20480571 intergenic not near genes chr3L 20484383 3` UTR ZnT77C - chr3L_5_20480001 chr3L_20480001 RAL-812 1068 chr3L 20536236 20536257 chr3L 20536434 20536440 6 196 2.5 0.5 1.5 2.4 204 chr3L 20536236 intron Rcd2 - chr3L 20536338 intron Rcd2 - chr3L 20536440 intron Rcd2 - chr3L_6_20535001 chr3L_20535001 RAL-812 1069 chr3L 20556851 20556882 chr3L 20557140 20557170 5 289 4.5 1.0 2.8 1.3 319 chr3L 20556851 intergenic not near genes chr3L 20557010 intergenic not near genes chr3L 20557170 intergenic not near genes chr3L_5_20555001 chr3L_20555001 RAL-812 1070 chr3L 20590064 20590097 chr3L 20590602 20590634 412 7 530 1.5 1.0 1.2 3.2 570 chr3L 20590064 intergenic not near genes chr3L 20590349 intergenic not near genes chr3L 20590634 intergenic not near genes chr3L_7_20590001 chr3L_20590001 RAL-812 1071 chr3L 20616142 20616177 chr3L 20616344 20616379 7 202 0.0 1.5 0.8 3.9 237 chr3L 20616142 intron knrl - chr3L 20616260 intron knrl - chr3L 20616379 intron knrl - chr3L_7_20615001 chr3L_20615001 RAL-812 1072 chr3L 20692544 20692551 chr3L 20692658 20692665 4 114 0.0 7.0 3.5 0.9 121 chr3L 20692544 3` UTR kni - chr3L 20692604 3` UTR kni - chr3L 20692665 3` UTR kni - chr3L_4_20690001 chr3L_20690001 RAL-812 1073 chr3L 20821295 20821309 chr3L 20824764 20824778 NOF 6 3468 1.5 5.5 3.5 1.3 3483 chr3L 20821295 intron Pka-R1 + chr3L 20823036 intron Pka-R1 + chr3L 20824778 intron Pka-R1 + chr3L_6_20820001 chr3L_20820001 RAL-812 1074 chr3L 20849293 20849297 chr3L 20849362 20849376 5 77 2.5 4.0 3.2 1.2 83 chr3L 20849293 intron CG32432 - chr3L 20849334 intron CG32432 - chr3L 20849376 intron CG32432 - chr3L_5_20845001 chr3L_20845001 RAL-812 1075 chr3L 21014918 21014946 chr3L 21023397 21023397 Tirant 7 8471 5.0 2.0 3.5 1.6 8479 chr3L 21014918 intron skd - chr3L 21019158 intron skd - chr3L 21023397 intron skd - chr3L_7_21015001 chr3L_21015001 RAL-812 1076 chr3L 21082221 21082233 chr3L 21082288 21082311 5 76 0.0 2.5 1.2 2.3 90 chr3L 21082221 intron ko - chr3L 21082266 intron ko - chr3L 21082311 intron ko - chr3L_5_21080001 chr3L_21080001 RAL-812 1077 chr3L 21151862 21151897 chr3L 21156946 21156981 flea 8 5084 1.0 0.0 0.5 5.3 5119 chr3L 21151862 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156981 intron Ac78C - chr3L_8_21150001 chr3L_21150001 RAL-812 1078 chr3L 21186974 21186998 chr3L 21187055 21187079 7 81 3.0 1.5 2.2 2.2 105 chr3L 21186974 intron CG42337 - chr3L 21187026 intron CG42337 - chr3L 21187079 intron CG42337 - chr3L_7_21185001 chr3L_21185001 RAL-812 1079 chr3L 21243760 21243766 chr3L 21251322 21251329 412 4 7563 2.0 7.5 4.8 0.7 7569 chr3L 21243760 intron Eip78C + chr3L 21247544 intron Eip78C + chr3L 21251329 intron Eip78C + chr3L_4_21245001 chr3L_21245001 RAL-812 1080 chr3L 21306159 21306180 chr3L 21315318 21315339 roo 5 9159 1.5 1.0 1.2 2.3 9180 chr3L 21306159 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310749 intron Pc - chr3L 21315339 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-812 1081 chr3L 21393629 21393649 chr3L 21393725 21393749 8 97 3.5 3.5 3.5 1.8 120 chr3L 21393629 intron rgn + chr3L 21393689 intron rgn + chr3L 21393749 intron rgn + chr3L_8_21390001 chr3L_21390001 RAL-812 1082 chr3L 21408460 21408484 chr3L 21408538 21408562 8 77 2.0 5.5 3.8 1.7 102 chr3L 21408460 intron rgn + chr3L 21408511 intron rgn + chr3L 21408562 intron rgn + chr3L_8_21405001 chr3L_21405001 RAL-812 1083 chr3L 21415143 21415166 chr3L 21415220 21415248 8 79 2.5 4.5 3.5 1.8 105 chr3L 21415143 intron rgn + chr3L 21415196 intron rgn + chr3L 21415248 intron rgn + chr3L_8_21415001 chr3L_21415001 RAL-812 1084 chr3L 21432241 21432273 chr3L 21432345 21432377 6 99 3.0 4.0 3.5 1.3 136 chr3L 21432241 intron,exon barc -,CG33288 + chr3L 21432309 intron,exon barc -,CG33288 + chr3L 21432377 intron,exon barc -,CG33288 + chr3L_6_21430001 chr3L_21430001 RAL-812 1085 chr3L 21639206 21639227 chr3L 21639284 21639306 5 78 2.5 5.5 4.0 1.0 100 chr3L 21639206 intergenic CG32444 +,CG32445 + chr3L 21639256 intergenic CG32445 +,CG32444 + chr3L 21639306 intergenic CG32445 +,CG32444 + chr3L_5_21635001 chr3L_21635001 RAL-812 1086 chr3L 21656995 21657024 chr3L 21657088 21657117 10 92 2.0 2.0 2.0 3.3 122 chr3L 21656995 intron CG43980 + chr3L 21657056 intron CG43980 + chr3L 21657117 intron CG43980 + chr3L_10_21655001 chr3L_21655001 RAL-812 1087 chr3L 21749317 21749353 chr3L 21754477 21754482 Doc 10 5151 3.0 5.0 4.0 2.0 5165 chr3L 21749317 intron Syn1 - chr3L 21751900 intron Syn1 - chr3L 21754482 intron Syn1 - chr3L_10_21750001 chr3L_21750001 RAL-812 1088 chr3L 21767038 21767050 chr3L 21767118 21767131 4 81 3.0 3.5 3.2 1.0 93 chr3L 21767038 intron Syn1 - chr3L 21767084 intron Syn1 - chr3L 21767131 intron Syn1 - chr3L_4_21765001 chr3L_21765001 RAL-812 1089 chr3L 21787610 21787637 chr3L 21787688 21787714 9 78 2.5 2.0 2.2 2.8 104 chr3L 21787610 intergenic not near genes chr3L 21787662 intergenic not near genes chr3L 21787714 intergenic not near genes chr3L_9_21785001 chr3L_21785001 RAL-812 1090 chr3L 21799940 21799969 chr3L 21800025 21800053 4 85 2.5 6.5 4.5 0.7 113 chr3L 21799940 intergenic not near genes chr3L 21799996 intergenic not near genes chr3L 21800053 intergenic not near genes chr3L_4_21795001 chr3L_21795001 RAL-812 1091 chr3L 21849500 21849532 chr3L 21849582 21849614 10 82 1.5 3.0 2.2 3.1 114 chr3L 21849500 intron mub + chr3L 21849557 intron mub + chr3L 21849614 intron mub + chr3L_10_21845001 chr3L_21845001 RAL-812 1092 chr3L 21873491 21873506 chr3L 21873555 21873588 8 82 1.5 2.5 2.0 2.7 97 chr3L 21873491 intron mub + chr3L 21873540 intron mub + chr3L 21873588 intron mub + chr3L_8_21870001 chr3L_21870001 RAL-812 1093 chr3L 21905332 21905363 chr3L 21905410 21905443 14 74 3.5 5.5 4.5 2.5 111 chr3L 21905332 intron mub + chr3L 21905388 intron mub + chr3L 21905443 intron mub + chr3L_14_21905001 chr3L_21905001 RAL-812 1094 chr3L 21954229 21954233 chr3L 23611202 23611206 4 1656972 18.0 17.0 17.5 0.2 1656977 chr3L 21954229 intergenic not near genes chr3L 22782718 intron SPoCk + chr3L 23611206 intron AGO3 + chr3L_4_22780001 chr3L_22780001 RAL-812 1095 chr3L 21966479 21966504 chr3L 21966562 21966587 4 79 4.5 3.0 3.8 0.8 108 chr3L 21966479 intron CS-2 + chr3L 21966533 intron CS-2 + chr3L 21966587 intron CS-2 + chr3L_4_21965001 chr3L_21965001 RAL-812 1096 chr3L 21991117 21991151 chr3L 21991220 21991254 8 103 2.0 2.5 2.2 2.5 137 chr3L 21991117 intergenic not near genes chr3L 21991186 intergenic not near genes chr3L 21991254 intergenic not near genes chr3L_8_21990001 chr3L_21990001 RAL-812 1097 chr3L 21994439 21994471 chr3L 21994520 21994552 8 81 2.0 0.5 1.2 3.6 113 chr3L 21994439 intergenic not near genes chr3L 21994496 intergenic not near genes chr3L 21994552 intergenic not near genes chr3L_8_21990001 chr3L_21990001 RAL-812 1098 chr3L 22010633 22010651 chr3L 22010781 22010798 4 148 1.5 3.0 2.2 1.2 165 chr3L 22010633 intergenic not near genes chr3L 22010716 intergenic not near genes chr3L 22010798 intergenic not near genes chr3L_4_22010001 chr3L_22010001 RAL-812 1099 chr3L 22012347 22012379 chr3L 22012502 22012534 16 154 2.5 1.5 2.0 5.3 187 chr3L 22012347 intergenic not near genes chr3L 22012440 intergenic not near genes chr3L 22012534 intergenic not near genes chr3L_16_22010001 chr3L_22010001 RAL-812 1100 chr3L 22018713 22018742 chr3L 22018792 22018819 5 73 3.5 2.5 3.0 1.2 106 chr3L 22018713 intergenic not near genes chr3L 22018766 intergenic not near genes chr3L 22018819 intergenic not near genes chr3L_5_22015001 chr3L_22015001 RAL-812 1101 chr3L 22023216 22023235 chr3L 22023308 22023327 7 92 3.0 3.0 3.0 1.8 111 chr3L 22023216 intergenic not near genes chr3L 22023272 intergenic not near genes chr3L 22023327 intergenic not near genes chr3L_7_22020001 chr3L_22020001 RAL-812 1102 chr3L 22023236 22023250 chr3L 22023307 22023329 4 84 1.5 3.0 2.2 1.2 93 chr3L 22023236 intergenic not near genes chr3L 22023282 intergenic not near genes chr3L 22023329 intergenic not near genes chr3L_4_22020001 chr3L_22020001 RAL-812 1103 chr3L 22099687 22099704 chr3L 22105872 22105890 3S18 6 6186 3.0 1.0 2.0 2.0 6203 chr3L 22099687 intergenic not near genes chr3L 22102788 intergenic not near genes chr3L 22105890 intergenic not near genes chr3L_6_22100001 chr3L_22100001 RAL-812 1104 chr3L 22130504 22130519 chr3L 22130650 22130663 4 144 1.0 3.0 2.0 1.3 159 chr3L 22130504 intergenic not near genes chr3L 22130584 intergenic not near genes chr3L 22130663 intergenic not near genes chr3L_4_22130001 chr3L_22130001 RAL-812 1105 chr3L 22166463 22166475 chr3L 22166540 22166553 5 78 3.0 2.5 2.8 1.3 90 chr3L 22166463 intron olf413 + chr3L 22166508 intron olf413 + chr3L 22166553 intron olf413 + chr3L_5_22165001 chr3L_22165001 RAL-812 1106 chr3L 22179106 22179117 chr3L 22179182 22179203 6 79 3.0 1.5 2.2 1.9 97 chr3L 22179106 intron olf413 + chr3L 22179154 intron olf413 + chr3L 22179203 intron olf413 + chr3L_6_22175001 chr3L_22175001 RAL-812 1107 chr3L 22447203 22447232 chr3L 22447294 22447323 10 91 2.5 1.5 2.0 3.3 120 chr3L 22447203 intergenic not near genes chr3L 22447263 intergenic not near genes chr3L 22447323 intergenic not near genes chr3L_10_22445001 chr3L_22445001 RAL-812 1108 chr3L 22554424 22554441 chr3L 22554500 22554517 6 75 5.5 5.0 5.2 1.0 93 chr3L 22554424 intergenic not near genes chr3L 22554470 intergenic not near genes chr3L 22554517 intergenic not near genes chr3L_6_22550001 chr3L_22550001 RAL-812 1109 chr3L 22555768 22555803 chr3L 22563238 22563243 blood 8 7461 0.5 3.0 1.8 2.9 7475 chr3L 22555768 intergenic not near genes chr3L 22559506 intergenic not near genes chr3L 22563243 intergenic not near genes chr3L_8_22555001 chr3L_22555001 RAL-812 1110 chr3L 22569580 22569602 chr3L 22569678 22569690 7 95 2.5 4.5 3.5 1.6 110 chr3L 22569580 intergenic not near genes chr3L 22569635 intergenic not near genes chr3L 22569690 intergenic not near genes chr3L_7_22565001 chr3L_22565001 RAL-812 1111 chr3L 22570435 22570454 chr3L 22570578 22570598 13 144 3.5 7.0 5.2 2.1 163 chr3L 22570435 intergenic not near genes chr3L 22570516 intergenic not near genes chr3L 22570598 intergenic not near genes chr3L_13_22570001 chr3L_22570001 RAL-812 1112 chr3L 22577620 22577647 chr3L 22582408 22582435 Doc 8 4786 1.5 5.5 3.5 1.8 4815 chr3L 22577620 intergenic not near genes chr3L 22580028 intergenic not near genes chr3L 22582435 3` UTR CG14459 - chr3L_8_22580001 chr3L_22580001 RAL-812 1113 chr3L 22617191 22617215 chr3L 22624643 22624667 blood 7 7451 1.5 0.5 1.0 3.5 7476 chr3L 22617191 intron CG14459 - chr3L 22620929 intron CG14459 - chr3L 22624667 intron CG14459 - chr3L_7_22620001 chr3L_22620001 RAL-812 1114 chr3L 22678078 22678110 chr3L 22678170 22678177 13 85 6.0 3.0 4.5 2.4 99 chr3L 22678078 intron CG14457 + chr3L 22678128 intron CG14457 + chr3L 22678177 intron CG14457 + chr3L_13_22675001 chr3L_22675001 RAL-812 1115 chr3L 22689096 22689124 chr3L 22689184 22689212 7 88 4.0 4.5 4.2 1.3 116 chr3L 22689096 intergenic not near genes chr3L 22689154 intergenic not near genes chr3L 22689212 intergenic not near genes chr3L_7_22685001 chr3L_22685001 RAL-812 1116 chr3L 22838590 22838619 chr3L 22838670 22838700 9 81 3.5 4.5 4.0 1.8 110 chr3L 22838590 intergenic CG11226 + chr3L 22838645 intergenic CG11226 + chr3L 22838700 intergenic not near genes chr3L_9_22835001 chr3L_22835001 RAL-812 1117 chr3L 22853466 22853721 chr3L 22853549 22853807 24 85 1.5 3.0 2.2 7.5 341 chr3L 22853466 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853636 5` UTR CR43426 + chr3L 22853807 5` UTR CR43426 + chr3L_24_22850001 chr3L_22850001 RAL-812 1118 chr3L 22865984 22866008 chr3L 22867117 22867141 Doc 4 1133 2.0 2.5 2.2 1.2 1157 chr3L 22865984 intron CG33170 + chr3L 22866562 intron CG33170 + chr3L 22867141 intron CG33170 + chr3L_4_22865001 chr3L_22865001 RAL-812 1119 chr3L 22909024 22909056 chr3L 22910196 22910228 11 1170 2.5 1.5 2.0 3.7 1204 chr3L 22909024 intergenic CR45661 + chr3L 22909626 5` UTR CR45661 + chr3L 22910228 intergenic CG12768 + chr3L_11_22905001 chr3L_22905001 RAL-812 1120 chr3L 23750928 23750958 chr3L 23751129 23751159 6 202 37.5 14.5 26.0 0.2 231 chr3L 23750928 intergenic not near genes chr3L 23751044 intergenic not near genes chr3L 23751159 intergenic not near genes chr3L_6_23750001 chr3L_23750001 RAL-812 1121 chr3L 23824023 23824047 chr3L 23824436 23824460 4 412 0.0 2.0 1.0 2.0 437 chr3L 23824023 intergenic not near genes chr3L 23824242 intergenic not near genes chr3L 23824460 intergenic not near genes chr3L_4_23820001 chr3L_23820001 RAL-812 1122 chr3L 24168792 24168820 chr3L 24176115 24176146 ZAM 6 7315 1.5 5.0 3.2 1.4 7354 chr3L 24168792 intron Snap25 + chr3L 24172469 intron Snap25 + chr3L 24176146 intron Snap25 + chr3L_6_24170001 chr3L_24170001 RAL-812 1123 chr3L 27390691 27390710 chr3L 27390770 27390788 13 78 28.5 29.0 28.8 0.4 97 chr3L 27390691 intron Dbp80 + chr3L 27390740 intron Dbp80 + chr3L 27390788 intron Dbp80 + chr3L_13_27390001 chr3L_27390001 RAL-812 1124 chr3R 2534153 2534167 chr3R 2541700 2541715 5 7553 13.0 10.0 11.5 0.4 7562 chr3R 2534153 intergenic not near genes chr3R 2537934 intergenic not near genes chr3R 2541715 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-812 1125 chr3R 3621288 3621319 chr3R 3621717 3621747 8 428 2.5 6.0 4.2 1.5 459 chr3R 3621288 intergenic not near genes chr3R 3621518 intergenic not near genes chr3R 3621747 intergenic not near genes chr3R_8_3620001 chr3R_3620001 RAL-812 1126 chr3R 4063809 4063822 chr3R 4069089 4069102 7 5280 4.0 11.5 7.8 0.8 5293 chr3R 4063809 intergenic not near genes chr3R 4066456 intergenic not near genes chr3R 4069102 intergenic not near genes chr3R_7_4065001 chr3R_4065001 RAL-812 1127 chr3R 4206071 4206102 chr3R 4211646 4211677 mdg3 7 5574 0.5 1.0 0.8 3.9 5606 chr3R 4206071 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211677 intron CG14636 - chr3R_7_4205001 chr3R_4205001 RAL-812 1128 chr3R 4289361 4289391 chr3R 4289726 4289756 6 364 4.5 1.5 3.0 1.5 395 chr3R 4289361 intron cpx + chr3R 4289558 intron cpx + chr3R 4289756 intron cpx + chr3R_6_4285001 chr3R_4285001 RAL-812 1129 chr3R 4366756 4366790 chr3R 4375139 4375152 roo 5 8379 1.0 0.0 0.5 3.3 8396 chr3R 4366756 3` UTR CG1090 + chr3R 4370954 intergenic not near genes chr3R 4375152 5` UTR CR44922 + chr3R_5_4370001 chr3R_4370001 RAL-812 1130 chr3R 4408410 4408438 chr3R 4412714 4412740 Juan 7 4304 3.0 2.0 2.5 2.0 4330 chr3R 4408410 intron CG32944 - chr3R 4410575 intron CG32944 - chr3R 4412740 intron CG32944 - chr3R_7_4410001 chr3R_4410001 RAL-812 1131 chr3R 4698259 4698282 chr3R 4698346 4698371 7 87 3.0 3.5 3.2 1.7 112 chr3R 4698259 intron CG43427 + chr3R 4698315 intron CG43427 + chr3R 4698371 intron CG43427 + chr3R_7_4695001 chr3R_4695001 RAL-812 1132 chr3R 4753242 4753259 chr3R 4757545 4757558 F-element 8 4302 11.0 8.0 9.5 0.8 4316 chr3R 4753242 intron,intron atms +,CG44098 - chr3R 4755400 intron,intron atms +,CG44098 - chr3R 4757558 intron,exon atms +,CG44098 - chr3R_8_4755001 chr3R_4755001 RAL-812 1133 chr3R 4764459 4764489 chr3R 4764692 4764722 11 233 4.5 1.0 2.8 2.9 263 chr3R 4764459 intron,intron atms +,CG44098 - chr3R 4764590 intron,intron atms +,CG44098 - chr3R 4764722 intron,intron atms +,CG44098 - chr3R_11_4760001 chr3R_4760001 RAL-812 1134 chr3R 4769159 4769191 chr3R 4769236 4769269 16 78 3.0 2.5 2.8 4.2 110 chr3R 4769159 intron,intron atms +,CG44098 - chr3R 4769214 intron,intron atms +,CG44098 - chr3R 4769269 intron,intron atms +,CG44098 - chr3R_16_4765001 chr3R_4765001 RAL-812 1135 chr3R 4887480 4887509 chr3R 4894854 4894869 rover 4 7372 3.5 4.0 3.8 0.8 7389 chr3R 4887480 intergenic not near genes chr3R 4891174 intergenic not near genes chr3R 4894869 intergenic not near genes chr3R_4_4890001 chr3R_4890001 RAL-812 1136 chr3R 4943611 4943622 chr3R 4943716 4943727 6 104 5.0 2.5 3.8 1.2 116 chr3R 4943611 intron Cdep + chr3R 4943669 intron Cdep + chr3R 4943727 intron Cdep + chr3R_6_4940001 chr3R_4940001 RAL-812 1137 chr3R 4966013 4966035 chr3R 4966105 4966127 8 92 2.5 1.0 1.8 2.9 114 chr3R 4966013 intron CG1124 + chr3R 4966070 intron CG1124 + chr3R 4966127 intron CG1124 + chr3R_8_4965001 chr3R_4965001 RAL-812 1138 chr3R 5045844 5045871 chr3R 5052946 5052973 HMS-Beagle 5 7102 3.5 0.5 2.0 1.7 7129 chr3R 5045844 intron CR43635 - chr3R 5049408 intergenic not near genes chr3R 5052973 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-812 1139 chr3R 5067980 5068012 chr3R 5073497 5073529 mdg3 6 5517 1.5 2.0 1.8 2.1 5549 chr3R 5067980 intergenic not near genes chr3R 5070754 intergenic not near genes chr3R 5073529 intergenic not near genes chr3R_6_5070001 chr3R_5070001 RAL-812 1140 chr3R 5115015 5115025 chr3R 5115108 5115119 4 94 7.5 2.0 4.8 0.7 104 chr3R 5115015 intergenic not near genes chr3R 5115067 intergenic not near genes chr3R 5115119 intergenic not near genes chr3R_4_5115001 chr3R_5115001 RAL-812 1141 chr3R 5115028 5115044 chr3R 5115103 5115138 8 91 3.5 1.5 2.5 2.3 110 chr3R 5115028 intergenic not near genes chr3R 5115083 intergenic not near genes chr3R 5115138 intergenic not near genes chr3R_8_5115001 chr3R_5115001 RAL-812 1142 chr3R 5203495 5203527 chr3R 5203573 5203605 9 79 2.5 2.0 2.2 2.8 110 chr3R 5203495 intron cno - chr3R 5203550 intron cno - chr3R 5203605 intron cno - chr3R_9_5200001 chr3R_5200001 RAL-812 1143 chr3R 5327188 5327204 chr3R 5327265 5327280 5 77 2.5 5.0 3.8 1.0 92 chr3R 5327188 intron mtd - chr3R 5327234 intron mtd - chr3R 5327280 intron mtd - chr3R_5_5325001 chr3R_5325001 RAL-812 1144 chr3R 5338396 5338427 chr3R 5343573 5343604 Rt1c 12 5177 3.0 4.5 3.8 2.5 5208 chr3R 5338396 intron mtd - chr3R 5341000 intron mtd - chr3R 5343604 intron mtd - chr3R_12_5340001 chr3R_5340001 RAL-812 1145 chr3R 5445965 5445988 chr3R 5452425 5452448 Burdock 7 6460 0.5 4.0 2.2 2.2 6483 chr3R 5445965 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452448 intron CG14669 + chr3R_7_5445001 chr3R_5445001 RAL-812 1146 chr3R 5746018 5746045 chr3R 5746257 5746286 pogo 5 240 1.0 3.5 2.2 1.6 268 chr3R 5746018 3` UTR Madm + chr3R 5746152 3` UTR Madm + chr3R 5746286 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-812 1147 chr3R 5772378 5772409 chr3R 5772536 5772567 9 158 1.0 2.0 1.5 3.6 189 chr3R 5772378 intron CG2082 - chr3R 5772472 intron CG2082 - chr3R 5772567 intron CG2082 - chr3R_9_5770001 chr3R_5770001 RAL-812 1148 chr3R 5809128 5809144 chr3R 5809369 5809385 pogo 8 241 3.5 4.5 4.0 1.6 257 chr3R 5809128 3` UTR CG11000 + chr3R 5809256 3` UTR CG11000 + chr3R 5809385 3` UTR CG11000 + chr3R_8_5805001 chr3R_5805001 RAL-812 1149 chr3R 5822380 5822413 chr3R 5823547 5823580 1360 8 1167 4.5 3.0 3.8 1.7 1200 chr3R 5822380 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823580 3` UTR CG2023 - chr3R_8_5820001 chr3R_5820001 RAL-812 1150 chr3R 5927562 5927591 chr3R 5927802 5927831 pogo 9 238 4.0 3.0 3.5 2.0 269 chr3R 5927562 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927831 intron CG34113 - chr3R_9_5925001 chr3R_5925001 RAL-812 1151 chr3R 5947963 5947998 chr3R 5948058 5948093 4 90 2.0 2.0 2.0 1.3 130 chr3R 5947963 intron CG34113 - chr3R 5948028 intron CG34113 - chr3R 5948093 intron CG34113 - chr3R_4_5945001 chr3R_5945001 RAL-812 1152 chr3R 6015979 6015994 chr3R 6024441 6024454 Tirant 5 8469 2.5 3.0 2.8 1.3 8475 chr3R 6015979 intergenic not near genes chr3R 6020216 intergenic not near genes chr3R 6024454 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-812 1153 chr3R 6048448 6048461 chr3R 6048531 6048544 7 83 6.5 2.5 4.5 1.3 96 chr3R 6048448 intergenic not near genes chr3R 6048496 intergenic not near genes chr3R 6048544 intergenic not near genes chr3R_7_6045001 chr3R_6045001 RAL-812 1154 chr3R 6048462 6048476 chr3R 6048528 6048557 7 80 3.5 1.5 2.5 2.0 95 chr3R 6048462 intergenic not near genes chr3R 6048510 intergenic not near genes chr3R 6048557 intergenic not near genes chr3R_7_6045001 chr3R_6045001 RAL-812 1155 chr3R 6110447 6110471 chr3R 6110631 6110655 5 184 3.5 2.0 2.8 1.3 208 chr3R 6110447 exon Obp83ef - chr3R 6110551 intron Obp83ef - chr3R 6110655 intron Obp83ef - chr3R_5_6110001 chr3R_6110001 RAL-812 1156 chr3R 6158510 6158538 chr3R 6167093 6167118 Tirant 5 8582 6.5 4.0 5.2 0.8 8608 chr3R 6158510 intergenic not near genes chr3R 6162814 intergenic not near genes chr3R 6167118 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-812 1157 chr3R 6275479 6275510 chr3R 6275557 6275588 9 78 1.0 0.0 0.5 6.0 109 chr3R 6275479 intergenic not near genes chr3R 6275534 intergenic not near genes chr3R 6275588 intergenic not near genes chr3R_9_6275001 chr3R_6275001 RAL-812 1158 chr3R 6510025 6510033 chr3R 6515106 6515114 jockey 4 5081 1.5 1.0 1.2 1.8 5089 chr3R 6510025 intergenic not near genes chr3R 6512570 intergenic not near genes chr3R 6515114 intergenic not near genes chr3R_4_6510001 chr3R_6510001 RAL-812 1159 chr3R 6578883 6578911 chr3R 6579003 6579030 9 120 3.0 0.5 1.8 3.2 147 chr3R 6578883 intron dpr11 - chr3R 6578956 intron dpr11 - chr3R 6579030 intron dpr11 - chr3R_9_6575001 chr3R_6575001 RAL-812 1160 chr3R 6717689 6717706 chr3R 6717826 6717843 6 136 0.0 1.0 0.5 4.0 154 chr3R 6717689 intron pb - chr3R 6717766 intron pb - chr3R 6717843 intron pb - chr3R_6_6715001 chr3R_6715001 RAL-812 1161 chr3R 6737504 6737531 chr3R 6739291 6739317 Doc 9 1786 1.5 5.0 3.2 2.1 1813 chr3R 6737504 intron pb - chr3R 6738410 intron pb - chr3R 6739317 intron pb - chr3R_9_6735001 chr3R_6735001 RAL-812 1162 chr3R 6957403 6957411 chr3R 6957655 6957663 4 252 4.5 4.0 4.2 0.8 260 chr3R 6957403 intron Antp - chr3R 6957533 intron Antp - chr3R 6957663 intron Antp - chr3R_4_6955001 chr3R_6955001 RAL-812 1163 chr3R 6978884 6978908 chr3R 6978969 6978993 4 83 1.5 0.5 1.0 2.0 109 chr3R 6978884 intron Antp - chr3R 6978938 intron Antp - chr3R 6978993 intron Antp - chr3R_4_6975001 chr3R_6975001 RAL-812 1164 chr3R 7322221 7322242 chr3R 7322302 7322323 7 81 3.5 3.5 3.5 1.6 102 chr3R 7322221 intergenic not near genes chr3R 7322272 intergenic not near genes chr3R 7322323 intergenic not near genes chr3R_7_7320001 chr3R_7320001 RAL-812 1165 chr3R 7386999 7387013 chr3R 7387101 7387115 6 102 2.5 2.5 2.5 1.7 116 chr3R 7386999 intergenic CR45560 + chr3R 7387057 intergenic CR45560 + chr3R 7387115 intergenic CR45560 + chr3R_6_7385001 chr3R_7385001 RAL-812 1166 chr3R 7396375 7396390 chr3R 7396478 7396493 5 103 2.0 3.0 2.5 1.4 118 chr3R 7396375 intergenic not near genes chr3R 7396434 intergenic not near genes chr3R 7396493 intergenic not near genes chr3R_5_7395001 chr3R_7395001 RAL-812 1167 chr3R 7402042 7402074 chr3R 7402324 7402344 12 279 4.0 4.0 4.0 2.4 302 chr3R 7402042 intergenic not near genes chr3R 7402193 intergenic not near genes chr3R 7402344 intergenic not near genes chr3R_12_7400001 chr3R_7400001 RAL-812 1168 chr3R 7417876 7417907 chr3R 7417961 7417992 19 85 5.0 3.0 4.0 3.8 116 chr3R 7417876 intergenic not near genes chr3R 7417934 intergenic not near genes chr3R 7417992 intergenic not near genes chr3R_19_7415001 chr3R_7415001 RAL-812 1169 chr3R 7444740 7444764 chr3R 7444817 7444841 7 77 3.5 3.0 3.2 1.7 101 chr3R 7444740 intergenic not near genes chr3R 7444790 intergenic not near genes chr3R 7444841 intergenic not near genes chr3R_7_7440001 chr3R_7440001 RAL-812 1170 chr3R 7447997 7448012 chr3R 7448075 7448090 4 78 4.0 3.0 3.5 0.9 93 chr3R 7447997 intergenic not near genes chr3R 7448044 intergenic not near genes chr3R 7448090 intergenic not near genes chr3R_4_7445001 chr3R_7445001 RAL-812 1171 chr3R 7617993 7618018 chr3R 7618085 7618110 5 92 1.0 3.0 2.0 1.7 117 chr3R 7617993 intron CG34127 - chr3R 7618052 intron CG34127 - chr3R 7618110 intron CG34127 - chr3R_5_7615001 chr3R_7615001 RAL-812 1172 chr3R 7621528 7621564 chr3R 7621619 7621654 4 90 0.0 2.0 1.0 2.0 126 chr3R 7621528 intron CG34127 - chr3R 7621591 intron CG34127 - chr3R 7621654 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-812 1173 chr3R 7655003 7655040 chr3R 7655085 7655122 11 82 1.5 2.0 1.8 3.9 119 chr3R 7655003 intergenic not near genes chr3R 7655062 intergenic not near genes chr3R 7655122 intergenic not near genes chr3R_11_7655001 chr3R_7655001 RAL-812 1174 chr3R 7694581 7694589 chr3R 7713642 7713650 invader3 5 19061 2.0 0.5 1.2 2.3 19069 chr3R 7694581 3` UTR Nlg1 + chr3R 7704116 intergenic not near genes chr3R 7713650 intergenic not near genes chr3R_5_7700001 chr3R_7700001 RAL-812 1175 chr3R 7729466 7729487 chr3R 7737404 7737423 Stalker2 6 7938 3.5 3.0 3.2 1.4 7957 chr3R 7729466 intergenic not near genes chr3R 7733444 intergenic not near genes chr3R 7737423 intergenic not near genes chr3R_6_7730001 chr3R_7730001 RAL-812 1176 chr3R 7849644 7849675 chr3R 7850811 7850842 1360 10 1166 1.5 2.5 2.0 3.3 1198 chr3R 7849644 intron CG34384 + chr3R 7850243 intron CG34384 + chr3R 7850842 intron CG34384 + chr3R_10_7850001 chr3R_7850001 RAL-812 1177 chr3R 7857640 7857671 chr3R 7857723 7857753 10 82 0.5 2.0 1.2 4.5 113 chr3R 7857640 3` UTR CG17816 - chr3R 7857696 3` UTR CG17816 - chr3R 7857753 3` UTR CG17816 - chr3R_10_7855001 chr3R_7855001 RAL-812 1178 chr3R 8094410 8094430 chr3R 8099715 8099735 Transpac 4 5305 3.5 2.0 2.8 1.1 5325 chr3R 8094410 intron CG7900 + chr3R 8097072 intron CG7900 + chr3R 8099735 intron CG7900 + chr3R_4_8095001 chr3R_8095001 RAL-812 1179 chr3R 8101763 8101792 chr3R 8104847 8104876 G2 8 3080 4.0 1.5 2.8 2.1 3113 chr3R 8101763 exon CG7900 + chr3R 8103320 intron CG7900 + chr3R 8104876 3` UTR CG7900 + chr3R_8_8100001 chr3R_8100001 RAL-812 1180 chr3R 8107392 8107418 chr3R 8107526 8107549 6 133 3.5 1.5 2.5 1.7 157 chr3R 8107392 intron puc + chr3R 8107470 intron puc + chr3R 8107549 intron puc + chr3R_6_8105001 chr3R_8105001 RAL-812 1181 chr3R 8339246 8339247 chr3R 21907535 21907536 9 13568289 15.0 22.5 18.8 0.5 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_9_15120001 chr3R_15120001 RAL-812 1182 chr3R 8403009 8403034 chr3R 8412175 8412190 roo 10 9162 4.5 6.5 5.5 1.5 9181 chr3R 8403009 intron CG45263 - chr3R 8407600 intron CG45263 - chr3R 8412190 intron CG45263 - chr3R_10_8405001 chr3R_8405001 RAL-812 1183 chr3R 8541339 8541361 chr3R 8541420 8541442 10 79 6.0 6.0 6.0 1.4 103 chr3R 8541339 intergenic not near genes chr3R 8541390 intergenic not near genes chr3R 8541442 intergenic not near genes chr3R_10_8540001 chr3R_8540001 RAL-812 1184 chr3R 8570477 8570510 chr3R 8575113 8575146 HMS-Beagle 12 4633 4.5 4.0 4.2 2.3 4669 chr3R 8570477 intergenic not near genes chr3R 8572812 intergenic not near genes chr3R 8575146 intergenic not near genes chr3R_12_8570001 chr3R_8570001 RAL-812 1185 chr3R 8601783 8601800 chr3R 8610929 8610946 roo 9 9151 4.5 1.5 3.0 2.2 9163 chr3R 8601783 intron 5-HT2B + chr3R 8606364 intron 5-HT2B + chr3R 8610946 intron 5-HT2B + chr3R_9_8605001 chr3R_8605001 RAL-812 1186 chr3R 8707355 8707384 chr3R 8709795 8709825 jockey 16 2440 4.5 3.0 3.8 3.3 2470 chr3R 8707355 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709825 intergenic not near genes chr3R_16_8705001 chr3R_8705001 RAL-812 1187 chr3R 8856361 8856399 chr3R 8856438 8856476 7 77 2.0 2.0 2.0 2.3 115 chr3R 8856361 intron pyd - chr3R 8856418 intron pyd - chr3R 8856476 intron pyd - chr3R_7_8855001 chr3R_8855001 RAL-812 1188 chr3R 9082044 9082071 chr3R 9082138 9082157 11 92 4.5 4.5 4.5 2.0 113 chr3R 9082044 intron pum - chr3R 9082100 intron pum - chr3R 9082157 intron pum - chr3R_11_9080001 chr3R_9080001 RAL-812 1189 chr3R 9114419 9114438 chr3R 9115981 9116000 4 1562 0.5 2.0 1.2 1.8 1581 chr3R 9114419 intron pum - chr3R 9115210 intron pum - chr3R 9116000 intron pum - chr3R_4_9115001 chr3R_9115001 RAL-812 1190 chr3R 9134333 9134369 chr3R 9134422 9134458 18 89 1.0 2.5 1.8 6.4 125 chr3R 9134333 intron pum - chr3R 9134396 intron pum - chr3R 9134458 intron pum - chr3R_18_9130001 chr3R_9130001 RAL-812 1191 chr3R 9141139 9141170 chr3R 9141223 9141254 6 84 1.5 2.0 1.8 2.1 115 chr3R 9141139 intron pum - chr3R 9141196 intron pum - chr3R 9141254 intron pum - chr3R_6_9140001 chr3R_9140001 RAL-812 1192 chr3R 9319587 9319609 chr3R 9320013 9320044 jockey 8 434 1.5 3.5 2.5 2.3 457 chr3R 9319587 intron CG8861 - chr3R 9319816 intron CG8861 - chr3R 9320044 intron CG8861 - chr3R_8_9315001 chr3R_9315001 RAL-812 1193 chr3R 9323498 9323524 chr3R 9323589 9323589 4 84 2.0 1.5 1.8 1.4 91 chr3R 9323498 intron CG8861 - chr3R 9323544 intron CG8861 - chr3R 9323589 intron CG8861 - chr3R_4_9320001 chr3R_9320001 RAL-812 1194 chr3R 9382818 9382848 chr3R 9382943 9382973 11 125 1.5 4.5 3.0 2.8 155 chr3R 9382818 intron FER - chr3R 9382896 intron FER - chr3R 9382973 intron FER - chr3R_11_9380001 chr3R_9380001 RAL-812 1195 chr3R 9430514 9430540 chr3R 9430596 9430622 8 82 3.0 3.0 3.0 2.0 108 chr3R 9430514 intron ps + chr3R 9430568 intron ps + chr3R 9430622 intron ps + chr3R_8_9430001 chr3R_9430001 RAL-812 1196 chr3R 9549562 9549582 chr3R 9549651 9549663 9 88 3.5 2.5 3.0 2.2 101 chr3R 9549562 intron,3` UTR mura -,CR42549 - chr3R 9549612 intron,3` UTR mura -,CR42549 - chr3R 9549663 intron,3` UTR mura -,CR42549 - chr3R_9_9545001 chr3R_9545001 RAL-812 1197 chr3R 9703812 9703839 chr3R 9703889 9703916 8 76 4.0 3.5 3.8 1.7 104 chr3R 9703812 intron Unc-115a - chr3R 9703864 intron Unc-115a - chr3R 9703916 intron Unc-115a - chr3R_8_9700001 chr3R_9700001 RAL-812 1198 chr3R 9781167 9781199 chr3R 9787180 9787213 7 6018 24.0 18.0 21.0 0.3 6046 chr3R 9781167 3` UTR,intron CR31514 -,CG12947 + chr3R 9784190 intron MtnA - chr3R 9787213 3` UTR CG8500 + chr3R_7_9780001 chr3R_9780001 RAL-812 1199 chr3R 9836877 9836900 chr3R 9836959 9836988 6 85 2.0 7.0 4.5 1.1 111 chr3R 9836877 intron Teh1 - chr3R 9836932 intron Teh1 - chr3R 9836988 intron Teh1 - chr3R_6_9835001 chr3R_9835001 RAL-812 1200 chr3R 9891464 9891482 chr3R 9891604 9891621 6 139 0.0 1.5 0.8 3.3 157 chr3R 9891464 intron Glut4EF + chr3R 9891542 intron Glut4EF + chr3R 9891621 intron Glut4EF + chr3R_6_9890001 chr3R_9890001 RAL-812 1201 chr3R 10029649 10029687 chr3R 10029738 10029775 15 85 3.0 4.5 3.8 3.1 126 chr3R 10029649 intron Mical - chr3R 10029712 intron Mical - chr3R 10029775 intron Mical - chr3R_15_10025001 chr3R_10025001 RAL-812 1202 chr3R 10034438 10034474 chr3R 10034517 10034544 8 77 2.5 1.5 2.0 2.7 106 chr3R 10034438 intron Mical - chr3R 10034491 intron Mical - chr3R 10034544 intron Mical - chr3R_8_10030001 chr3R_10030001 RAL-812 1203 chr3R 10140433 10140465 chr3R 10140522 10140556 5 90 0.5 0.0 0.2 4.2 123 chr3R 10140433 3` UTR TAF1B - chr3R 10140494 3` UTR TAF1B - chr3R 10140556 3` UTR TAF1B - chr3R_5_10140001 chr3R_10140001 RAL-812 1204 chr3R 10151083 10151110 chr3R 10151160 10151187 9 77 3.0 4.0 3.5 2.0 104 chr3R 10151083 intron Invadolysin + chr3R 10151135 intron Invadolysin + chr3R 10151187 intron,exon Invadolysin +,CG34303 - chr3R_9_10150001 chr3R_10150001 RAL-812 1205 chr3R 10231146 10231180 chr3R 10231616 10231650 17 469 2.5 1.5 2.0 5.7 504 chr3R 10231146 intron CG42795 + chr3R 10231398 intron CG42795 + chr3R 10231650 intron CG42795 + chr3R_17_10230001 chr3R_10230001 RAL-812 1206 chr3R 10231791 10231814 chr3R 10237366 10237375 mdg3 5 5573 1.5 1.0 1.2 2.3 5584 chr3R 10231791 intron CG42795 + chr3R 10234583 intron CG42795 + chr3R 10237375 intron CG42795 + chr3R_5_10230001 chr3R_10230001 RAL-812 1207 chr3R 10401908 10401921 chr3R 10402098 10402109 5 188 1.5 5.5 3.5 1.1 201 chr3R 10401908 exon mthl11 + chr3R 10402008 intron mthl11 + chr3R 10402109 exon mthl11 + chr3R_5_10400001 chr3R_10400001 RAL-812 1208 chr3R 10531869 10531900 chr3R 10531950 10531981 9 81 4.0 1.5 2.8 2.4 112 chr3R 10531869 intron hth - chr3R 10531925 intron hth - chr3R 10531981 intron hth - chr3R_9_10530001 chr3R_10530001 RAL-812 1209 chr3R 10673659 10673680 chr3R 10673735 10673755 5 76 0.0 3.5 1.8 1.8 96 chr3R 10673659 intergenic not near genes chr3R 10673707 intergenic not near genes chr3R 10673755 intergenic not near genes chr3R_5_10670001 chr3R_10670001 RAL-812 1210 chr3R 10920047 10920078 chr3R 10920125 10920150 8 77 1.5 5.5 3.5 1.8 103 chr3R 10920047 intergenic not near genes chr3R 10920098 intergenic not near genes chr3R 10920150 intergenic not near genes chr3R_8_10920001 chr3R_10920001 RAL-812 1211 chr3R 11052415 11052447 chr3R 11052496 11052528 10 79 2.5 1.5 2.0 3.3 113 chr3R 11052415 intergenic not near genes chr3R 11052472 intergenic not near genes chr3R 11052528 intergenic not near genes chr3R_10_11050001 chr3R_11050001 RAL-812 1212 chr3R 11078948 11078977 chr3R 11079028 11079057 8 80 3.5 5.5 4.5 1.5 109 chr3R 11078948 intergenic not near genes chr3R 11079002 intergenic not near genes chr3R 11079057 intergenic not near genes chr3R_8_11075001 chr3R_11075001 RAL-812 1213 chr3R 11085460 11085487 chr3R 11085537 11085564 5 77 0.0 0.5 0.2 4.2 104 chr3R 11085460 3` UTR CR44940 - chr3R 11085512 intergenic CR44940 - chr3R 11085564 intergenic CR44940 - chr3R_5_11085001 chr3R_11085001 RAL-812 1214 chr3R 11102322 11102355 chr3R 11102403 11102420 11 78 7.0 2.0 4.5 2.0 98 chr3R 11102322 intergenic not near genes chr3R 11102371 intergenic not near genes chr3R 11102420 intergenic not near genes chr3R_11_11100001 chr3R_11100001 RAL-812 1215 chr3R 11103172 11103181 chr3R 11103254 11103263 4 82 0.0 0.0 0.0 4.0 91 chr3R 11103172 intergenic not near genes chr3R 11103218 intergenic not near genes chr3R 11103263 intergenic not near genes chr3R_4_11100001 chr3R_11100001 RAL-812 1216 chr3R 11130124 11130136 chr3R 11130213 11130225 5 87 5.0 0.0 2.5 1.4 101 chr3R 11130124 intergenic not near genes chr3R 11130174 intergenic not near genes chr3R 11130225 intergenic not near genes chr3R_5_11130001 chr3R_11130001 RAL-812 1217 chr3R 11174605 11174615 chr3R 11175306 11175329 7 711 25.0 19.5 22.2 0.3 724 chr3R 11174605 exon Ugt86Dj - chr3R 11174967 intron Ugt86Dj - chr3R 11175329 exon Ugt86Dj - chr3R_7_11170001 chr3R_11170001 RAL-812 1218 chr3R 11261232 11261250 chr3R 11261325 11261346 16 95 1.5 3.0 2.2 5.0 114 chr3R 11261232 intergenic not near genes chr3R 11261289 intergenic not near genes chr3R 11261346 intergenic not near genes chr3R_16_11260001 chr3R_11260001 RAL-812 1219 chr3R 11379240 11379266 chr3R 11388395 11388421 roo 8 9154 3.0 1.0 2.0 2.7 9181 chr3R 11379240 intron pros + chr3R 11383830 intron pros + chr3R 11388421 intron pros + chr3R_8_11380001 chr3R_11380001 RAL-812 1220 chr3R 11408752 11408781 chr3R 11408846 11408875 14 93 4.0 4.5 4.2 2.7 123 chr3R 11408752 3` UTR mRpL40 + chr3R 11408814 3` UTR mgr - chr3R 11408875 3` UTR mgr - chr3R_14_11405001 chr3R_11405001 RAL-812 1221 chr3R 11452085 11452104 chr3R 11452172 11452191 5 86 0.5 2.0 1.2 2.3 106 chr3R 11452085 intron CG17230 + chr3R 11452138 intron CG17230 + chr3R 11452191 intron CG17230 + chr3R_5_11450001 chr3R_11450001 RAL-812 1222 chr3R 11455600 11455604 chr3R 11455726 11455730 4 126 1.5 4.0 2.8 1.1 130 chr3R 11455600 intron,intron CG17230 +,PGRP-LB - chr3R 11455665 intron,intron CG17230 +,PGRP-LB - chr3R 11455730 intron,intron CG17230 +,PGRP-LB - chr3R_4_11455001 chr3R_11455001 RAL-812 1223 chr3R 11461274 11461296 chr3R 11461354 11461371 5 77 4.0 3.0 3.5 1.1 97 chr3R 11461274 intron CG17230 + chr3R 11461322 intron CG17230 + chr3R 11461371 intron CG17230 + chr3R_5_11460001 chr3R_11460001 RAL-812 1224 chr3R 11513846 11513874 chr3R 11513929 11513957 10 81 2.0 1.5 1.8 3.6 111 chr3R 11513846 intergenic not near genes chr3R 11513902 intergenic not near genes chr3R 11513957 intergenic not near genes chr3R_10_11510001 chr3R_11510001 RAL-812 1225 chr3R 11518819 11518838 chr3R 11518910 11518911 6 88 2.5 4.5 3.5 1.3 92 chr3R 11518819 intergenic not near genes chr3R 11518865 intergenic not near genes chr3R 11518911 intergenic not near genes chr3R_6_11515001 chr3R_11515001 RAL-812 1226 chr3R 11710204 11710228 chr3R 11710282 11710306 12 77 4.0 1.0 2.5 3.4 102 chr3R 11710204 intergenic not near genes chr3R 11710255 intergenic not near genes chr3R 11710306 intergenic not near genes chr3R_12_11710001 chr3R_11710001 RAL-812 1227 chr3R 11834172 11834200 chr3R 11834252 11834265 10 76 2.5 4.0 3.2 2.4 93 chr3R 11834172 intron CG6959 - chr3R 11834218 intron CG6959 - chr3R 11834265 intron CG6959 - chr3R_10_11830001 chr3R_11830001 RAL-812 1228 chr3R 11841073 11841097 chr3R 11846264 11846288 BS 5 5190 2.5 7.5 5.0 0.8 5215 chr3R 11841073 intron CG6959 - chr3R 11843680 intron CG6959 - chr3R 11846288 intron CG6959 - chr3R_5_11840001 chr3R_11840001 RAL-812 1229 chr3R 12088115 12088323 chr3R 12088194 12088417 4 90 0.5 0.0 0.2 3.3 302 chr3R 12088115 intron CG14741 - chr3R 12088266 intron CG14741 - chr3R 12088417 intron CG14741 - chr3R_4_12085001 chr3R_12085001 RAL-812 1230 chr3R 12328168 12328181 chr3R 12328274 12328292 4 110 5.0 0.5 2.8 1.1 124 chr3R 12328168 intergenic CR45584 + chr3R 12328230 intergenic CR45584 + chr3R 12328292 intergenic CR45584 + chr3R_4_12325001 chr3R_12325001 RAL-812 1231 chr3R 12546453 12546487 chr3R 12546536 12546569 8 83 2.0 2.0 2.0 2.7 116 chr3R 12546453 intron Octbeta3R - chr3R 12546511 intron Octbeta3R - chr3R 12546569 intron Octbeta3R - chr3R_8_12545001 chr3R_12545001 RAL-812 1232 chr3R 12568495 12568520 chr3R 12568575 12568600 4 79 4.5 2.5 3.5 0.9 105 chr3R 12568495 intron Octbeta2R - chr3R 12568548 intron Octbeta2R - chr3R 12568600 intron Octbeta2R - chr3R_4_12565001 chr3R_12565001 RAL-812 1233 chr3R 12569972 12569985 chr3R 12570035 12570065 5 73 2.0 3.5 2.8 1.3 93 chr3R 12569972 intron Octbeta2R - chr3R 12570018 intron Octbeta2R - chr3R 12570065 intron Octbeta2R - chr3R_5_12570001 chr3R_12570001 RAL-812 1234 chr3R 12599376 12599401 chr3R 12599459 12599483 10 82 2.0 4.5 3.2 2.4 107 chr3R 12599376 intergenic not near genes chr3R 12599430 intergenic not near genes chr3R 12599483 intergenic not near genes chr3R_10_12595001 chr3R_12595001 RAL-812 1235 chr3R 12706469 12706481 chr3R 12715783 12715811 6 9316 36.5 32.5 34.5 0.2 9342 chr3R 12706469 exon mus308 - chr3R 12711140 exon mus308 - chr3R 12715811 intron Men - chr3R_6_12710001 chr3R_12710001 RAL-812 1236 chr3R 12733475 12733507 chr3R 12733551 12733584 11 76 2.5 2.5 2.5 3.1 109 chr3R 12733475 intergenic not near genes chr3R 12733530 intergenic not near genes chr3R 12733584 intergenic not near genes chr3R_11_12730001 chr3R_12730001 RAL-812 1237 chr3R 12778940 12778969 chr3R 12779071 12779100 7 131 5.5 4.0 4.8 1.2 160 chr3R 12778940 intron beat-Vc - chr3R 12779020 intron beat-Vc - chr3R 12779100 intron beat-Vc - chr3R_7_12775001 chr3R_12775001 RAL-812 1238 chr3R 12786460 12786488 chr3R 12786818 12786845 10 358 1.5 3.0 2.2 3.1 385 chr3R 12786460 intergenic not near genes chr3R 12786652 intergenic not near genes chr3R 12786845 intergenic not near genes chr3R_10_12785001 chr3R_12785001 RAL-812 1239 chr3R 12814242 12814267 chr3R 12814316 12814343 5 76 3.0 2.0 2.5 1.4 101 chr3R 12814242 intron CG31345 - chr3R 12814292 intron CG31345 - chr3R 12814343 intron CG31345 - chr3R_5_12810001 chr3R_12810001 RAL-812 1240 chr3R 12859558 12859592 chr3R 12859634 12859669 5 75 2.5 1.0 1.8 1.8 111 chr3R 12859558 intergenic CG10126 - chr3R 12859614 intergenic CG10126 - chr3R 12859669 intergenic CG10126 - chr3R_5_12855001 chr3R_12855001 RAL-812 1241 chr3R 12972556 12972583 chr3R 12972695 12972722 5 139 2.0 1.5 1.8 1.8 166 chr3R 12972556 intron CG7381 - chr3R 12972639 intron CG7381 - chr3R 12972722 intron CG7381 - chr3R_5_12970001 chr3R_12970001 RAL-812 1242 chr3R 13059963 13059977 chr3R 13060158 13060172 4 195 1.5 0.0 0.8 2.2 209 chr3R 13059963 intron sim + chr3R 13060068 intron sim + chr3R 13060172 intron sim + chr3R_4_13060001 chr3R_13060001 RAL-812 1243 chr3R 13138327 13138336 chr3R 13138414 13138424 5 88 0.5 4.0 2.2 1.6 97 chr3R 13138327 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138376 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138424 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-812 1244 chr3R 13314105 13314128 chr3R 13318893 13318916 Doc 6 4788 2.5 2.5 2.5 1.7 4811 chr3R 13314105 intergenic not near genes chr3R 13316510 intergenic not near genes chr3R 13318916 intergenic CG45080 - chr3R_6_13315001 chr3R_13315001 RAL-812 1245 chr3R 13323959 13323987 chr3R 13324068 13324098 8 110 3.0 1.0 2.0 2.7 139 chr3R 13323959 intergenic not near genes chr3R 13324028 intergenic not near genes chr3R 13324098 intergenic not near genes chr3R_8_13320001 chr3R_13320001 RAL-812 1246 chr3R 13326939 13326963 chr3R 13327034 13327058 6 92 2.0 8.0 5.0 1.0 119 chr3R 13326939 intergenic not near genes chr3R 13326998 intergenic not near genes chr3R 13327058 intergenic not near genes chr3R_6_13325001 chr3R_13325001 RAL-812 1247 chr3R 13356091 13356125 chr3R 13356176 13356210 11 85 2.5 4.0 3.2 2.6 119 chr3R 13356091 intergenic not near genes chr3R 13356150 intergenic not near genes chr3R 13356210 intergenic not near genes chr3R_11_13355001 chr3R_13355001 RAL-812 1248 chr3R 13391630 13391659 chr3R 13391708 13391737 8 77 4.5 4.5 4.5 1.5 107 chr3R 13391630 intron CCHa2 - chr3R 13391684 intron CCHa2 - chr3R 13391737 intron CCHa2 - chr3R_8_13390001 chr3R_13390001 RAL-812 1249 chr3R 13603057 13603076 chr3R 13603148 13603167 6 90 2.0 2.0 2.0 2.0 110 chr3R 13603057 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603167 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-812 1250 chr3R 13609561 13609580 chr3R 13609655 13609674 4 94 0.0 1.0 0.5 2.7 113 chr3R 13609561 intergenic CG9759 - chr3R 13609618 intergenic CG9759 - chr3R 13609674 intergenic CG9759 - chr3R_4_13605001 chr3R_13605001 RAL-812 1251 chr3R 13659735 13659848 chr3R 13659841 13659937 4 102 0.0 0.0 0.0 4.0 202 chr3R 13659735 intron Hrb87F - chr3R 13659836 intron Hrb87F - chr3R 13659937 intron Hrb87F - chr3R_4_13655001 chr3R_13655001 RAL-812 1252 chr3R 13693028 13693028 chr3R 21907535 21907535 4 8214507 11.0 22.5 16.8 0.2 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_4_17800001 chr3R_17800001 RAL-812 1253 chr3R 13714527 13714551 chr3R 13714666 13714689 4 139 0.0 2.0 1.0 2.0 162 chr3R 13714527 intergenic CR34044 - chr3R 13714608 intergenic CR34044 - chr3R 13714689 intergenic CR34044 - chr3R_4_13710001 chr3R_13710001 RAL-812 1254 chr3R 13863682 13863716 chr3R 13863770 13863802 9 84 1.5 3.0 2.2 2.8 120 chr3R 13863682 intergenic not near genes chr3R 13863742 intergenic not near genes chr3R 13863802 intergenic not near genes chr3R_9_13860001 chr3R_13860001 RAL-812 1255 chr3R 13948233 13948258 chr3R 13948311 13948336 8 78 3.0 1.5 2.2 2.5 103 chr3R 13948233 intergenic CG31517 + chr3R 13948284 intergenic CG31517 + chr3R 13948336 intergenic CG31517 + chr3R_8_13945001 chr3R_13945001 RAL-812 1256 chr3R 14021645 14021662 chr3R 14023470 14023487 S-element 4 1825 4.0 4.5 4.2 0.8 1842 chr3R 14021645 intron rdx - chr3R 14022566 intron rdx - chr3R 14023487 intron rdx - chr3R_4_14020001 chr3R_14020001 RAL-812 1257 chr3R 14049019 14049048 chr3R 14049099 14049128 9 80 0.0 4.5 2.2 2.8 109 chr3R 14049019 intergenic not near genes chr3R 14049074 intergenic not near genes chr3R 14049128 intergenic not near genes chr3R_9_14045001 chr3R_14045001 RAL-812 1258 chr3R 14058123 14058147 chr3R 14058243 14058267 8 119 2.0 1.0 1.5 3.2 144 chr3R 14058123 intron foxo + chr3R 14058195 intron foxo + chr3R 14058267 intron foxo + chr3R_8_14055001 chr3R_14055001 RAL-812 1259 chr3R 14067142 14067154 chr3R 14067221 14067233 6 79 3.0 0.5 1.8 2.1 91 chr3R 14067142 exon foxo + chr3R 14067188 intron foxo + chr3R 14067233 intron foxo + chr3R_6_14065001 chr3R_14065001 RAL-812 1260 chr3R 14070132 14070141 chr3R 14070213 14070222 4 81 5.0 8.5 6.8 0.5 90 chr3R 14070132 intron foxo + chr3R 14070177 intron foxo + chr3R 14070222 intron foxo + chr3R_4_14070001 chr3R_14070001 RAL-812 1261 chr3R 14119686 14119714 chr3R 14119764 14119792 15 77 2.0 3.5 2.8 3.9 106 chr3R 14119686 3` UTR Abi - chr3R 14119739 3` UTR Abi - chr3R 14119792 3` UTR Abi - chr3R_15_14115001 chr3R_14115001 RAL-812 1262 chr3R 14161451 14161489 chr3R 14161542 14161580 8 90 1.5 3.0 2.2 2.5 129 chr3R 14161451 intergenic not near genes chr3R 14161516 intergenic not near genes chr3R 14161580 intergenic not near genes chr3R_8_14160001 chr3R_14160001 RAL-812 1263 chr3R 14294034 14294064 chr3R 14294112 14294142 7 78 1.5 2.0 1.8 2.5 108 chr3R 14294034 intron CG12207 + chr3R 14294088 intron CG12207 + chr3R 14294142 intron CG12207 + chr3R_7_14290001 chr3R_14290001 RAL-812 1264 chr3R 14327696 14327723 chr3R 14327778 14327805 6 82 2.0 1.5 1.8 2.1 109 chr3R 14327696 3` UTR CG3321 + chr3R 14327750 intergenic CG3321 +,spn-B + chr3R 14327805 intergenic CG3321 +,spn-B + chr3R_6_14325001 chr3R_14325001 RAL-812 1265 chr3R 14364081 14364091 chr3R 14364137 14364153 5 65 5.5 2.5 4.0 1.0 72 chr3R 14364081 intron NK7.1 - chr3R 14364117 intron NK7.1 - chr3R 14364153 intron NK7.1 - chr3R_5_14360001 chr3R_14360001 RAL-812 1266 chr3R 14440725 14440754 chr3R 14440800 14440830 4 76 0.5 2.0 1.2 1.8 105 chr3R 14440725 intron cv-c - chr3R 14440778 intron cv-c - chr3R 14440830 intron cv-c - chr3R_4_14440001 chr3R_14440001 RAL-812 1267 chr3R 14458733 14458754 chr3R 14458808 14458831 9 77 3.5 2.5 3.0 2.2 98 chr3R 14458733 intron cv-c - chr3R 14458782 intron cv-c - chr3R 14458831 intron cv-c - chr3R_9_14455001 chr3R_14455001 RAL-812 1268 chr3R 14482392 14482409 chr3R 14482468 14482478 8 75 3.0 0.0 1.5 3.2 86 chr3R 14482392 intergenic not near genes chr3R 14482435 intergenic not near genes chr3R 14482478 intergenic not near genes chr3R_8_14480001 chr3R_14480001 RAL-812 1269 chr3R 14497407 14497438 chr3R 14497488 14497519 12 80 2.5 1.0 1.8 4.3 112 chr3R 14497407 intron CR44177 + chr3R 14497463 intron CR44177 + chr3R 14497519 intron CR44177 + chr3R_12_14495001 chr3R_14495001 RAL-812 1270 chr3R 14527402 14527415 chr3R 14527479 14527492 4 77 6.5 5.5 6.0 0.6 90 chr3R 14527402 intron Pde6 - chr3R 14527447 intron Pde6 - chr3R 14527492 intron Pde6 - chr3R_4_14525001 chr3R_14525001 RAL-812 1271 chr3R 14608453 14608462 chr3R 14608545 14608554 4 92 1.0 2.5 1.8 1.4 101 chr3R 14608453 intergenic stumps + chr3R 14608504 intergenic stumps + chr3R 14608554 intergenic stumps + chr3R_4_14605001 chr3R_14605001 RAL-812 1272 chr3R 14662315 14662340 chr3R 14662396 14662421 20 81 3.0 3.0 3.0 5.0 106 chr3R 14662315 exon Rad17 - chr3R 14662368 intron Rad17 - chr3R 14662421 exon Rad17 - chr3R_20_14660001 chr3R_14660001 RAL-812 1273 chr3R 14685787 14685808 chr3R 14685868 14685889 7 81 3.0 2.0 2.5 2.0 102 chr3R 14685787 intron Meltrin - chr3R 14685838 intron Meltrin - chr3R 14685889 intron Meltrin - chr3R_7_14685001 chr3R_14685001 RAL-812 1274 chr3R 14694455 14694487 chr3R 14694533 14694567 12 78 3.0 3.0 3.0 3.0 112 chr3R 14694455 intron Meltrin - chr3R 14694511 intron Meltrin - chr3R 14694567 intron Meltrin - chr3R_12_14690001 chr3R_14690001 RAL-812 1275 chr3R 14704399 14704406 chr3R 14704476 14704483 5 77 2.0 3.5 2.8 1.3 84 chr3R 14704399 intron kibra - chr3R 14704441 intron kibra - chr3R 14704483 intron kibra - chr3R_5_14700001 chr3R_14700001 RAL-812 1276 chr3R 14716684 14716711 chr3R 14716766 14716793 10 82 1.0 0.5 0.8 5.6 109 chr3R 14716684 intron kibra - chr3R 14716738 intron kibra - chr3R 14716793 intron kibra - chr3R_10_14715001 chr3R_14715001 RAL-812 1277 chr3R 14778485 14778511 chr3R 14778574 14778582 6 86 2.0 1.5 1.8 2.1 97 chr3R 14778485 intron jvl + chr3R 14778534 intron jvl + chr3R 14778582 intron jvl + chr3R_6_14775001 chr3R_14775001 RAL-812 1278 chr3R 14821619 14821647 chr3R 14821768 14821796 6 149 2.5 3.0 2.8 1.6 177 chr3R 14821619 intron btsz - chr3R 14821708 intron btsz - chr3R 14821796 intron btsz - chr3R_6_14820001 chr3R_14820001 RAL-812 1279 chr3R 14869868 14869890 chr3R 14869956 14869981 7 91 3.5 5.0 4.2 1.3 113 chr3R 14869868 intron btsz - chr3R 14869924 intron btsz - chr3R 14869981 intron btsz - chr3R_7_14865001 chr3R_14865001 RAL-812 1280 chr3R 14927256 14927272 chr3R 14927345 14927370 10 97 3.0 3.5 3.2 2.4 114 chr3R 14927256 intergenic not near genes chr3R 14927313 intergenic not near genes chr3R 14927370 intergenic not near genes chr3R_10_14925001 chr3R_14925001 RAL-812 1281 chr3R 14941331 14941357 chr3R 14941435 14941461 5 104 1.5 3.0 2.2 1.6 130 chr3R 14941331 intergenic not near genes chr3R 14941396 intergenic not near genes chr3R 14941461 intergenic not near genes chr3R_5_14940001 chr3R_14940001 RAL-812 1282 chr3R 14988490 14988523 chr3R 14988595 14988628 11 105 4.0 2.5 3.2 2.6 138 chr3R 14988490 intergenic not near genes chr3R 14988559 intergenic not near genes chr3R 14988628 intergenic not near genes chr3R_11_14985001 chr3R_14985001 RAL-812 1283 chr3R 14994591 14994617 chr3R 14994680 14994703 8 84 2.5 3.0 2.8 2.1 112 chr3R 14994591 intergenic not near genes chr3R 14994647 intergenic not near genes chr3R 14994703 intergenic not near genes chr3R_8_14990001 chr3R_14990001 RAL-812 1284 chr3R 15004198 15004228 chr3R 15004284 15004314 10 85 0.5 3.0 1.8 3.6 116 chr3R 15004198 intergenic CR45599 - chr3R 15004256 intergenic CR45599 - chr3R 15004314 3` UTR CR45599 - chr3R_10_15000001 chr3R_15000001 RAL-812 1285 chr3R 15041438 15041456 chr3R 15045206 15045224 Doc 4 3768 0.5 3.5 2.0 1.3 3786 chr3R 15041438 intergenic not near genes chr3R 15043331 intergenic not near genes chr3R 15045224 intergenic not near genes chr3R_4_15040001 chr3R_15040001 RAL-812 1286 chr3R 15114928 15114948 chr3R 15115005 15115025 5 77 2.0 2.5 2.2 1.6 97 chr3R 15114928 intron CG42788 - chr3R 15114976 intron CG42788 - chr3R 15115025 intron CG42788 - chr3R_5_15110001 chr3R_15110001 RAL-812 1287 chr3R 15132059 15132078 chr3R 15135119 15135138 Juan 4 3060 5.5 8.5 7.0 0.5 3079 chr3R 15132059 intergenic CG42788 - chr3R 15133598 intergenic not near genes chr3R 15135138 3` UTR CG6912 - chr3R_4_15130001 chr3R_15130001 RAL-812 1288 chr3R 15162552 15162559 chr3R 15167320 15167327 F-element 4 4768 6.0 0.0 3.0 1.0 4775 chr3R 15162552 intron Gyc88E + chr3R 15164940 intron Gyc88E + chr3R 15167327 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-812 1289 chr3R 15517599 15517634 chr3R 15517680 15517703 6 75 1.5 5.5 3.5 1.3 104 chr3R 15517599 intergenic not near genes chr3R 15517651 intergenic not near genes chr3R 15517703 intergenic not near genes chr3R_6_15515001 chr3R_15515001 RAL-812 1290 chr3R 15594656 15594675 chr3R 15594739 15594758 5 83 0.0 1.5 0.8 2.8 102 chr3R 15594656 intergenic not near genes chr3R 15594707 intergenic not near genes chr3R 15594758 intergenic not near genes chr3R_5_15590001 chr3R_15590001 RAL-812 1291 chr3R 15601165 15601194 chr3R 15608687 15608716 412 16 7520 7.5 2.0 4.8 2.8 7551 chr3R 15601165 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608716 intergenic not near genes chr3R_16_15600001 chr3R_15600001 RAL-812 1292 chr3R 15618745 15618759 chr3R 15626218 15626233 blood 7 7473 0.5 3.5 2.0 2.3 7488 chr3R 15618745 intergenic not near genes chr3R 15622489 intergenic not near genes chr3R 15626233 intergenic not near genes chr3R_7_15620001 chr3R_15620001 RAL-812 1293 chr3R 15646792 15646799 chr3R 15646874 15646875 4 81 0.0 4.5 2.2 1.2 83 chr3R 15646792 intergenic not near genes chr3R 15646834 intergenic not near genes chr3R 15646875 intergenic not near genes chr3R_4_15645001 chr3R_15645001 RAL-812 1294 chr3R 15670169 15670200 chr3R 15670250 15670267 9 81 5.0 0.5 2.8 2.4 98 chr3R 15670169 intron pxb + chr3R 15670218 intron pxb + chr3R 15670267 intron pxb + chr3R_9_15670001 chr3R_15670001 RAL-812 1295 chr3R 15691188 15691331 chr3R 15691293 15691418 5 91 1.0 1.0 1.0 2.5 230 chr3R 15691188 intergenic not near genes chr3R 15691303 intergenic not near genes chr3R 15691418 intergenic not near genes chr3R_5_15690001 chr3R_15690001 RAL-812 1296 chr3R 16048851 16048882 chr3R 16048941 16048972 6 89 1.0 2.0 1.5 2.4 121 chr3R 16048851 intron ird5 - chr3R 16048912 intron ird5 - chr3R 16048972 intron ird5 - chr3R_6_16045001 chr3R_16045001 RAL-812 1297 chr3R 16073448 16073469 chr3R 16073551 16073573 4 104 3.5 0.0 1.8 1.4 125 chr3R 16073448 intron Mhcl - chr3R 16073510 intron Mhcl - chr3R 16073573 intron Mhcl - chr3R_4_16070001 chr3R_16070001 RAL-812 1298 chr3R 16520590 16520621 chr3R 16520665 16520699 10 77 3.5 1.5 2.5 2.9 109 chr3R 16520590 intron CG42342 + chr3R 16520644 intron CG42342 + chr3R 16520699 intron CG42342 + chr3R_10_16520001 chr3R_16520001 RAL-812 1299 chr3R 16563680 16563710 chr3R 16563759 16563789 15 79 4.0 4.0 4.0 3.0 109 chr3R 16563680 intron CG42342 + chr3R 16563734 intron CG42342 + chr3R 16563789 intron CG42342 + chr3R_15_16560001 chr3R_16560001 RAL-812 1300 chr3R 16735850 16735867 chr3R 16736016 16736033 6 165 8.0 2.5 5.2 1.0 183 chr3R 16735850 intergenic not near genes chr3R 16735942 intergenic not near genes chr3R 16736033 intergenic not near genes chr3R_6_16735001 chr3R_16735001 RAL-812 1301 chr3R 16735869 16735880 chr3R 16736014 16736045 5 161 5.5 2.0 3.8 1.0 176 chr3R 16735869 intergenic not near genes chr3R 16735957 intergenic not near genes chr3R 16736045 intergenic not near genes chr3R_5_16735001 chr3R_16735001 RAL-812 1302 chr3R 16756323 16756354 chr3R 16762510 16762545 diver 12 6189 3.0 1.0 2.0 4.0 6222 chr3R 16756323 intron bxd - chr3R 16759434 intron bxd - chr3R 16762545 intron bxd - chr3R_12_16755001 chr3R_16755001 RAL-812 1303 chr3R 16797443 16797471 chr3R 16797553 16797581 12 109 2.0 3.0 2.5 3.4 138 chr3R 16797443 intergenic not near genes chr3R 16797512 intergenic not near genes chr3R 16797581 intergenic not near genes chr3R_12_16795001 chr3R_16795001 RAL-812 1304 chr3R 16889960 16889989 chr3R 16890037 16890065 6 77 3.5 1.0 2.2 1.9 105 chr3R 16889960 intron iab-8 - chr3R 16890012 intron iab-8 - chr3R 16890065 intron iab-8 - chr3R_6_16890001 chr3R_16890001 RAL-812 1305 chr3R 17121532 17121549 chr3R 17121727 17121744 5 195 0.5 1.5 1.0 2.5 212 chr3R 17121532 intron cher - chr3R 17121638 intron,exon cher -,CG42779 + chr3R 17121744 intron,exon cher -,CG42779 + chr3R_5_17120001 chr3R_17120001 RAL-812 1306 chr3R 17268674 17268702 chr3R 17268796 17268824 6 122 1.0 2.5 1.8 2.1 150 chr3R 17268674 intergenic not near genes chr3R 17268749 intergenic not near genes chr3R 17268824 intergenic not near genes chr3R_6_17265001 chr3R_17265001 RAL-812 1307 chr3R 17290442 17290470 chr3R 17290528 17290556 6 86 1.0 2.0 1.5 2.4 114 chr3R 17290442 intergenic not near genes chr3R 17290499 intergenic not near genes chr3R 17290556 intergenic not near genes chr3R_6_17290001 chr3R_17290001 RAL-812 1308 chr3R 17294662 17294686 chr3R 17295090 17295114 BS 6 428 0.5 0.0 0.2 5.0 452 chr3R 17294662 intergenic not near genes chr3R 17294888 intergenic not near genes chr3R 17295114 intergenic not near genes chr3R_6_17290001 chr3R_17290001 RAL-812 1309 chr3R 17346698 17346717 chr3R 17348252 17348280 F-element 6 1562 1.0 5.0 3.0 1.5 1582 chr3R 17346698 intron beat-IIa - chr3R 17347489 intron beat-IIa - chr3R 17348280 intron beat-IIa - chr3R_6_17345001 chr3R_17345001 RAL-812 1310 chr3R 17355510 17355522 chr3R 17355588 17355592 6 76 3.5 3.5 3.5 1.3 82 chr3R 17355510 intron beat-IIa - chr3R 17355551 intron beat-IIa - chr3R 17355592 intron beat-IIa - chr3R_6_17355001 chr3R_17355001 RAL-812 1311 chr3R 17359029 17359055 chr3R 17359107 17359131 4 73 5.0 2.5 3.8 0.8 102 chr3R 17359029 intron beat-IIa - chr3R 17359080 intron beat-IIa - chr3R 17359131 intron beat-IIa - chr3R_4_17355001 chr3R_17355001 RAL-812 1312 chr3R 17394439 17394466 chr3R 17394603 17394628 11 161 3.5 7.0 5.2 1.8 189 chr3R 17394439 intron CREG - chr3R 17394534 intron CREG - chr3R 17394628 5` UTR CREG - chr3R_11_17390001 chr3R_17390001 RAL-812 1313 chr3R 17521579 17521586 chr3R 17521717 17521745 5 150 1.0 4.0 2.5 1.4 166 chr3R 17521579 intergenic not near genes chr3R 17521662 intergenic not near genes chr3R 17521745 intergenic not near genes chr3R_5_17520001 chr3R_17520001 RAL-812 1314 chr3R 17571582 17571609 chr3R 17571663 17571690 6 80 1.5 1.0 1.2 2.7 108 chr3R 17571582 intergenic not near genes chr3R 17571636 intergenic not near genes chr3R 17571690 intergenic not near genes chr3R_6_17570001 chr3R_17570001 RAL-812 1315 chr3R 17587209 17587245 chr3R 17587392 17587427 18 179 3.0 4.5 3.8 3.8 218 chr3R 17587209 intergenic not near genes chr3R 17587318 intergenic not near genes chr3R 17587427 intergenic not near genes chr3R_18_17585001 chr3R_17585001 RAL-812 1316 chr3R 17591287 17591313 chr3R 17591723 17591749 F-element 7 434 7.0 3.5 5.2 1.1 462 chr3R 17591287 intergenic not near genes chr3R 17591518 intergenic not near genes chr3R 17591749 intergenic not near genes chr3R_7_17590001 chr3R_17590001 RAL-812 1317 chr3R 17811196 17811224 chr3R 17811276 17811304 5 80 2.0 0.0 1.0 2.5 108 chr3R 17811196 intergenic CG18012 -,tinc + chr3R 17811250 intergenic CG18012 -,tinc + chr3R 17811304 intergenic CG18012 -,tinc + chr3R_5_17810001 chr3R_17810001 RAL-812 1318 chr3R 17814772 17814792 chr3R 17814857 17814877 7 84 1.5 3.0 2.2 2.2 105 chr3R 17814772 intron tinc + chr3R 17814824 intron tinc + chr3R 17814877 intron tinc + chr3R_7_17810001 chr3R_17810001 RAL-812 1319 chr3R 17823213 17823235 chr3R 17823298 17823320 4 85 2.0 2.5 2.2 1.2 107 chr3R 17823213 intron tinc + chr3R 17823266 intron tinc + chr3R 17823320 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-812 1320 chr3R 17845205 17845219 chr3R 17845267 17845294 4 72 5.0 5.0 5.0 0.7 89 chr3R 17845205 intron tinc + chr3R 17845250 intron tinc + chr3R 17845294 intron tinc + chr3R_4_17845001 chr3R_17845001 RAL-812 1321 chr3R 17881895 17881903 chr3R 17881983 17881996 5 92 1.5 0.0 0.8 2.8 101 chr3R 17881895 exon Rim - chr3R 17881946 intron Rim - chr3R 17881996 intron Rim - chr3R_5_17880001 chr3R_17880001 RAL-812 1322 chr3R 17925851 17925887 chr3R 17927318 17927354 hobo 6 1465 4.0 6.0 5.0 1.0 1503 chr3R 17925851 intron cpo + chr3R 17926602 intron cpo + chr3R 17927354 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-812 1323 chr3R 18041757 18041773 chr3R 18041834 18041835 4 73 0.0 0.0 0.0 4.0 78 chr3R 18041757 intergenic not near genes chr3R 18041796 intergenic not near genes chr3R 18041835 intergenic not near genes chr3R_4_18040001 chr3R_18040001 RAL-812 1324 chr3R 18126208 18126230 chr3R 18126287 18126309 9 78 4.0 3.0 3.5 2.0 101 chr3R 18126208 intron sr + chr3R 18126258 intron sr + chr3R 18126309 intron sr + chr3R_9_18125001 chr3R_18125001 RAL-812 1325 chr3R 18269001 18269024 chr3R 18269136 18269159 6 135 2.0 3.5 2.8 1.6 158 chr3R 18269001 intron CG18599 + chr3R 18269080 intron CG18599 + chr3R 18269159 intron CG18599 + chr3R_6_18265001 chr3R_18265001 RAL-812 1326 chr3R 18338996 18339026 chr3R 18339100 18339130 6 104 0.0 1.0 0.5 4.0 134 chr3R 18338996 intron CG15803 - chr3R 18339063 intron CG15803 - chr3R 18339130 intron CG15803 - chr3R_6_18335001 chr3R_18335001 RAL-812 1327 chr3R 18342023 18342042 chr3R 18342094 18342120 10 76 2.0 6.5 4.2 1.9 97 chr3R 18342023 intron CG15803 - chr3R 18342072 intron CG15803 - chr3R 18342120 intron CG15803 - chr3R_10_18340001 chr3R_18340001 RAL-812 1328 chr3R 18464329 18464341 chr3R 18464468 18464480 6 138 0.0 6.0 3.0 1.5 151 chr3R 18464329 intron fru - chr3R 18464404 intron fru - chr3R 18464480 intron fru - chr3R_6_18460001 chr3R_18460001 RAL-812 1329 chr3R 18501595 18501626 chr3R 18501676 18501707 12 81 1.5 4.0 2.8 3.2 112 chr3R 18501595 intron fru - chr3R 18501651 intron fru - chr3R 18501707 intron fru - chr3R_12_18500001 chr3R_18500001 RAL-812 1330 chr3R 18579578 18579589 chr3R 18579651 18579662 5 74 5.0 0.0 2.5 1.4 84 chr3R 18579578 intron,intron CG7694 +,fray + chr3R 18579620 intron,intron CG7694 +,fray + chr3R 18579662 intron,intron CG7694 +,fray + chr3R_5_18575001 chr3R_18575001 RAL-812 1331 chr3R 18606505 18606522 chr3R 18610736 18610754 F-element 4 4231 1.5 3.0 2.2 1.2 4249 chr3R 18606505 intron,intron qin +,CG14304 - chr3R 18608630 intron,intron qin +,CG14304 - chr3R 18610754 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-812 1332 chr3R 18730025 18730036 chr3R 18730101 18730112 8 76 2.5 2.5 2.5 2.3 87 chr3R 18730025 intron Cha + chr3R 18730068 intron Cha + chr3R 18730112 exon Cha + chr3R_8_18730001 chr3R_18730001 RAL-812 1333 chr3R 18781703 18781718 chr3R 18781779 18781785 4 71 5.0 7.0 6.0 0.6 82 chr3R 18781703 intron CG7720 - chr3R 18781744 intron CG7720 - chr3R 18781785 intron CG7720 - chr3R_4_18780001 chr3R_18780001 RAL-812 1334 chr3R 18808474 18808503 chr3R 18808551 18808580 4 76 3.5 1.5 2.5 1.1 106 chr3R 18808474 intron CG18208 - chr3R 18808527 intron CG18208 - chr3R 18808580 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-812 1335 chr3R 18812074 18812105 chr3R 18812152 18812182 12 77 6.5 3.0 4.8 2.1 108 chr3R 18812074 intron CG18208 - chr3R 18812128 intron CG18208 - chr3R 18812182 intron CG18208 - chr3R_12_18810001 chr3R_18810001 RAL-812 1336 chr3R 18817507 18817536 chr3R 18817605 18817634 8 98 2.0 0.5 1.2 3.6 127 chr3R 18817507 intron CG18208 - chr3R 18817570 intron CG18208 - chr3R 18817634 intron CG18208 - chr3R_8_18815001 chr3R_18815001 RAL-812 1337 chr3R 18839822 18839838 chr3R 18839895 18839916 9 78 3.0 4.5 3.8 1.9 94 chr3R 18839822 intron CG18208 - chr3R 18839869 intron CG18208 - chr3R 18839916 intron CG18208 - chr3R_9_18835001 chr3R_18835001 RAL-812 1338 chr3R 18856333 18856368 chr3R 18856622 18856658 11 287 4.5 4.5 4.5 2.0 325 chr3R 18856333 intergenic not near genes chr3R 18856496 intergenic not near genes chr3R 18856658 intergenic not near genes chr3R_11_18855001 chr3R_18855001 RAL-812 1339 chr3R 18891810 18891829 chr3R 18891893 18891912 5 82 1.5 2.0 1.8 1.8 102 chr3R 18891810 intergenic not near genes chr3R 18891861 intergenic not near genes chr3R 18891912 intergenic not near genes chr3R_5_18890001 chr3R_18890001 RAL-812 1340 chr3R 18932565 18932579 chr3R 18932739 18932746 6 172 3.5 6.5 5.0 1.0 181 chr3R 18932565 intron CG42613 + chr3R 18932656 intron CG42613 + chr3R 18932746 intron CG42613 + chr3R_6_18930001 chr3R_18930001 RAL-812 1341 chr3R 19193005 19193009 chr3R 19197284 19197309 F-element 4 4291 0.0 5.0 2.5 1.1 4304 chr3R 19193005 intron CG31475 + chr3R 19195157 intron CG31475 + chr3R 19197309 intron CG31475 + chr3R_4_19195001 chr3R_19195001 RAL-812 1342 chr3R 19201272 19201308 chr3R 19201359 19201395 15 86 1.0 3.5 2.2 4.7 123 chr3R 19201272 intergenic CG31475 + chr3R 19201334 intergenic CG31475 + chr3R 19201395 intergenic CG31475 + chr3R_15_19200001 chr3R_19200001 RAL-812 1343 chr3R 19702321 19702354 chr3R 19702403 19702433 10 80 3.5 3.0 3.2 2.4 112 chr3R 19702321 intergenic not near genes chr3R 19702377 intergenic not near genes chr3R 19702433 intergenic not near genes chr3R_10_19700001 chr3R_19700001 RAL-812 1344 chr3R 19716220 19716242 chr3R 19716297 19716319 6 77 1.5 0.0 0.8 3.3 99 chr3R 19716220 intergenic CG34286 - chr3R 19716270 intergenic CG34286 - chr3R 19716319 intergenic CG34286 - chr3R_6_19715001 chr3R_19715001 RAL-812 1345 chr3R 19908274 19908302 chr3R 19908357 19908385 7 84 0.0 1.5 0.8 3.9 111 chr3R 19908274 intron RhoGAP92B + chr3R 19908330 intron RhoGAP92B + chr3R 19908385 intron RhoGAP92B + chr3R_7_19905001 chr3R_19905001 RAL-812 1346 chr3R 19989851 19989857 chr3R 19989928 19989930 6 76 9.0 5.0 7.0 0.8 79 chr3R 19989851 intron Hs6st - chr3R 19989890 intron Hs6st - chr3R 19989930 intron Hs6st - chr3R_6_19985001 chr3R_19985001 RAL-812 1347 chr3R 19989862 19989877 chr3R 19989926 19989928 4 63 6.0 5.0 5.5 0.6 66 chr3R 19989862 intron Hs6st - chr3R 19989895 intron Hs6st - chr3R 19989928 intron Hs6st - chr3R_4_19985001 chr3R_19985001 RAL-812 1348 chr3R 20008823 20008856 chr3R 20008904 20008934 8 81 1.5 2.0 1.8 2.9 111 chr3R 20008823 intergenic MED25 +,Hs6st - chr3R 20008878 intergenic MED25 +,Hs6st - chr3R 20008934 intergenic MED25 +,Hs6st - chr3R_8_20005001 chr3R_20005001 RAL-812 1349 chr3R 20156703 20156718 chr3R 20165860 20165888 roo 4 9162 2.5 3.5 3.0 1.0 9185 chr3R 20156703 intergenic not near genes chr3R 20161296 intergenic not near genes chr3R 20165888 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-812 1350 chr3R 20205566 20205584 chr3R 20205686 20205706 5 122 5.0 1.5 3.2 1.2 140 chr3R 20205566 intron Nlg4 + chr3R 20205636 intron Nlg4 + chr3R 20205706 intron Nlg4 + chr3R_5_20205001 chr3R_20205001 RAL-812 1351 chr3R 20282277 20282308 chr3R 20282353 20282384 7 76 0.0 1.5 0.8 3.9 107 chr3R 20282277 intron cic + chr3R 20282330 intron cic + chr3R 20282384 intron cic + chr3R_7_20280001 chr3R_20280001 RAL-812 1352 chr3R 20331000 20331009 chr3R 20331486 20331495 roo 4 486 3.5 0.5 2.0 1.3 495 chr3R 20331000 intergenic Sirt2 + chr3R 20331248 intergenic Sirt2 + chr3R 20331495 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-812 1353 chr3R 20508349 20508356 chr3R 20508429 20508436 4 80 0.5 0.0 0.2 3.3 87 chr3R 20508349 intron CG4288 - chr3R 20508392 intron CG4288 - chr3R 20508436 intron CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-812 1354 chr3R 20594486 20594509 chr3R 20594576 20594599 7 90 0.5 0.0 0.2 5.8 113 chr3R 20594486 intron bon + chr3R 20594542 intron bon + chr3R 20594599 intron bon + chr3R_7_20590001 chr3R_20590001 RAL-812 1355 chr3R 20686968 20686985 chr3R 20687402 20687419 8 434 4.0 3.0 3.5 1.8 451 chr3R 20686968 intergenic not near genes chr3R 20687194 intergenic not near genes chr3R 20687419 intergenic not near genes chr3R_8_20685001 chr3R_20685001 RAL-812 1356 chr3R 20723854 20723882 chr3R 20723939 20723966 7 84 2.0 1.5 1.8 2.5 112 chr3R 20723854 intergenic not near genes chr3R 20723910 intergenic not near genes chr3R 20723966 intergenic not near genes chr3R_7_20720001 chr3R_20720001 RAL-812 1357 chr3R 20769578 20769610 chr3R 20769704 20769736 18 124 0.5 2.5 1.5 7.2 158 chr3R 20769578 intron Syp + chr3R 20769657 intron Syp + chr3R 20769736 intron Syp + chr3R_18_20765001 chr3R_20765001 RAL-812 1358 chr3R 20787441 20787456 chr3R 20787532 20787546 7 90 3.0 3.0 3.0 1.8 105 chr3R 20787441 intron Syp + chr3R 20787494 intron Syp + chr3R 20787546 intron Syp + chr3R_7_20785001 chr3R_20785001 RAL-812 1359 chr3R 20901342 20901375 chr3R 20901428 20901461 11 84 1.5 4.0 2.8 2.9 119 chr3R 20901342 intergenic not near genes chr3R 20901402 intergenic not near genes chr3R 20901461 intergenic CG5621 + chr3R_11_20900001 chr3R_20900001 RAL-812 1360 chr3R 21014025 21014039 chr3R 21014103 21014117 4 78 2.0 3.5 2.8 1.1 92 chr3R 21014025 3` UTR Calx + chr3R 21014071 3` UTR Calx + chr3R 21014117 3` UTR Calx + chr3R_4_21010001 chr3R_21010001 RAL-812 1361 chr3R 21141680 21141706 chr3R 21150155 21150187 Tirant 11 8475 2.5 4.0 3.2 2.6 8507 chr3R 21141680 intron SNF4Agamma + chr3R 21145934 intron SNF4Agamma + chr3R 21150187 intron SNF4Agamma + chr3R_11_21145001 chr3R_21145001 RAL-812 1362 chr3R 21150807 21150832 chr3R 21150942 21150967 5 135 2.0 3.5 2.8 1.3 160 chr3R 21150807 intron SNF4Agamma + chr3R 21150887 intron SNF4Agamma + chr3R 21150967 intron SNF4Agamma + chr3R_5_21150001 chr3R_21150001 RAL-812 1363 chr3R 21154550 21154584 chr3R 21154755 21154798 7 210 2.0 0.0 1.0 3.5 248 chr3R 21154550 intron SNF4Agamma + chr3R 21154674 intron SNF4Agamma + chr3R 21154798 intron SNF4Agamma + chr3R_7_21150001 chr3R_21150001 RAL-812 1364 chr3R 21472014 21472031 chr3R 21472095 21472112 6 81 3.0 1.5 2.2 1.9 98 chr3R 21472014 intergenic not near genes chr3R 21472063 intergenic not near genes chr3R 21472112 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-812 1365 chr3R 21502958 21502986 chr3R 21503104 21503132 5 146 0.5 1.5 1.0 2.5 174 chr3R 21502958 intron C15 + chr3R 21503045 intron C15 + chr3R 21503132 intron C15 + chr3R_5_21500001 chr3R_21500001 RAL-812 1366 chr3R 21569839 21569847 chr3R 21569920 21569927 4 80 4.0 3.5 3.8 0.8 88 chr3R 21569839 intergenic InR - chr3R 21569883 intergenic InR - chr3R 21569927 intergenic InR - chr3R_4_21565001 chr3R_21565001 RAL-812 1367 chr3R 21569849 21569860 chr3R 21569919 21569941 5 78 2.0 3.5 2.8 1.3 92 chr3R 21569849 intergenic InR - chr3R 21569895 intergenic InR - chr3R 21569941 intergenic InR - chr3R_5_21565001 chr3R_21565001 RAL-812 1368 chr3R 21609002 21609040 chr3R 21611636 21611666 NOF 8 2629 1.5 5.5 3.5 1.8 2664 chr3R 21609002 intron InR - chr3R 21610334 intron InR - chr3R 21611666 intron InR - chr3R_8_21610001 chr3R_21610001 RAL-812 1369 chr3R 21624102 21624121 chr3R 21624196 21624215 11 94 2.5 4.0 3.2 2.6 113 chr3R 21624102 intron E2f - chr3R 21624158 intron E2f - chr3R 21624215 intron E2f - chr3R_11_21620001 chr3R_21620001 RAL-812 1370 chr3R 21759903 21759910 chr3R 21759990 21760003 7 94 3.0 5.5 4.2 1.3 100 chr3R 21759903 exon CG42335 + chr3R 21759953 exon CG42335 + chr3R 21760003 exon CG42335 + chr3R_7_21755001 chr3R_21755001 RAL-812 1371 chr3R 21761140 21761152 chr3R 21768509 21768543 mdg1 10 7386 2.5 2.5 2.5 2.9 7403 chr3R 21761140 exon CG42335 + chr3R 21764842 intron CG42335 + chr3R 21768543 exon CG42335 + chr3R_10_21760001 chr3R_21760001 RAL-812 1372 chr3R 21794459 21794489 chr3R 21794547 21794579 12 86 2.5 3.0 2.8 3.2 120 chr3R 21794459 intron CASK - chr3R 21794519 intron CASK - chr3R 21794579 intron CASK - chr3R_12_21790001 chr3R_21790001 RAL-812 1373 chr3R 21836540 21836561 chr3R 21836632 21836653 5 92 0.5 2.0 1.2 2.3 113 chr3R 21836540 intergenic not near genes chr3R 21836596 intergenic not near genes chr3R 21836653 intergenic not near genes chr3R_5_21835001 chr3R_21835001 RAL-812 1374 chr3R 21897574 21897588 chr3R 21897834 21897836 9 256 2.5 5.5 4.0 1.8 262 chr3R 21897574 intron CG6678 + chr3R 21897705 intron CG6678 + chr3R 21897836 intron CG6678 + chr3R_9_21895001 chr3R_21895001 RAL-812 1375 chr3R 8339246 8339247 chr3R 21907534 21907534 6 13568288 15.0 22.0 18.5 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-812 1376 chr3R 21907534 21907534 chr3R 28831801 28831803 19 6924268 23.5 22.5 23.0 0.8 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_19_25365001 chr3R_25365001 RAL-812 1377 chr3R 8339246 8339247 chr3R 21907535 21907535 4 13568288 15.0 22.5 18.8 0.2 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_4_15120001 chr3R_15120001 RAL-812 1378 chr3R 21907535 21907535 chr3R 28831801 28831802 35 6924266 23.5 22.5 23.0 1.5 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_35_25365001 chr3R_25365001 RAL-812 1379 chr3R 21907536 21907536 chr3R 28831801 28831802 26 6924266 24.0 22.5 23.2 1.1 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_26_25365001 chr3R_25365001 RAL-812 1380 chr3R 22087569 22087589 chr3R 22087654 22087676 15 86 2.5 2.0 2.2 4.7 107 chr3R 22087569 intron,exon CG5778 -,CG5791 + chr3R 22087622 intron,exon CG5778 -,CG5791 + chr3R 22087676 intron,3` UTR CG5778 -,CG5791 + chr3R_15_22085001 chr3R_22085001 RAL-812 1381 chr3R 22191505 22191526 chr3R 22191580 22191605 6 76 3.0 2.5 2.8 1.6 100 chr3R 22191505 intron SKIP + chr3R 22191555 intron SKIP + chr3R 22191605 intron SKIP + chr3R_6_22190001 chr3R_22190001 RAL-812 1382 chr3R 22428580 22428607 chr3R 22428656 22428679 9 70 2.5 5.0 3.8 1.9 99 chr3R 22428580 intron CG13847 - chr3R 22428630 intron CG13847 - chr3R 22428679 intron CG13847 - chr3R_9_22425001 chr3R_22425001 RAL-812 1383 chr3R 22437796 22437821 chr3R 22437886 22437909 7 90 1.5 2.0 1.8 2.5 113 chr3R 22437796 intergenic not near genes chr3R 22437852 intergenic not near genes chr3R 22437909 intergenic not near genes chr3R_7_22435001 chr3R_22435001 RAL-812 1384 chr3R 22450543 22450572 chr3R 22453182 22453211 NOF 8 2639 1.0 7.0 4.0 1.6 2668 chr3R 22450543 intron CG34376 + chr3R 22451877 intron CG34376 + chr3R 22453211 intron CG34376 + chr3R_8_22450001 chr3R_22450001 RAL-812 1385 chr3R 22503871 22503905 chr3R 22503951 22503985 11 80 4.0 5.5 4.8 1.9 114 chr3R 22503871 intron Octbeta1R + chr3R 22503928 intron Octbeta1R + chr3R 22503985 intron Octbeta1R + chr3R_11_22500001 chr3R_22500001 RAL-812 1386 chr3R 22520763 22520792 chr3R 22520850 22520879 6 87 1.0 1.0 1.0 3.0 116 chr3R 22520763 intron CG5346 - chr3R 22520821 intron CG5346 - chr3R 22520879 intron CG5346 - chr3R_6_22520001 chr3R_22520001 RAL-812 1387 chr3R 22538452 22538472 chr3R 22538537 22538557 10 85 2.0 3.0 2.5 2.9 105 chr3R 22538452 intron CG5326 - chr3R 22538504 intron CG5326 - chr3R 22538557 intron CG5326 - chr3R_10_22535001 chr3R_22535001 RAL-812 1388 chr3R 22648327 22648361 chr3R 22648406 22648439 11 79 1.5 0.0 0.8 6.1 112 chr3R 22648327 intron wake + chr3R 22648383 intron wake + chr3R 22648439 intron wake + chr3R_11_22645001 chr3R_22645001 RAL-812 1389 chr3R 22684207 22684238 chr3R 22684283 22684314 9 76 2.0 5.0 3.5 2.0 107 chr3R 22684207 intergenic not near genes chr3R 22684260 intergenic not near genes chr3R 22684314 intergenic not near genes chr3R_9_22680001 chr3R_22680001 RAL-812 1390 chr3R 22794532 22794541 chr3R 22794608 22794618 4 77 3.5 2.0 2.8 1.1 86 chr3R 22794532 intergenic not near genes chr3R 22794575 intergenic not near genes chr3R 22794618 intergenic not near genes chr3R_4_22790001 chr3R_22790001 RAL-812 1391 chr3R 22835813 22835849 chr3R 22835894 22835930 7 80 2.5 1.5 2.0 2.3 117 chr3R 22835813 intergenic not near genes chr3R 22835872 intergenic not near genes chr3R 22835930 intergenic not near genes chr3R_7_22835001 chr3R_22835001 RAL-812 1392 chr3R 22836470 22836501 chr3R 22836624 22836655 16 154 0.5 0.5 0.5 10.7 185 chr3R 22836470 intergenic not near genes chr3R 22836562 intergenic not near genes chr3R 22836655 intergenic not near genes chr3R_16_22835001 chr3R_22835001 RAL-812 1393 chr3R 22871433 22871464 chr3R 22871532 22871563 10 99 2.0 2.0 2.0 3.3 130 chr3R 22871433 intergenic not near genes chr3R 22871498 intergenic not near genes chr3R 22871563 intergenic not near genes chr3R_10_22870001 chr3R_22870001 RAL-812 1394 chr3R 22877305 22877320 chr3R 22877433 22877446 5 127 3.0 2.5 2.8 1.3 141 chr3R 22877305 intergenic not near genes chr3R 22877376 intergenic not near genes chr3R 22877446 intergenic not near genes chr3R_5_22875001 chr3R_22875001 RAL-812 1395 chr3R 22880601 22880614 chr3R 22880678 22880691 4 77 5.0 7.5 6.2 0.6 90 chr3R 22880601 intergenic not near genes chr3R 22880646 intergenic not near genes chr3R 22880691 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-812 1396 chr3R 22881209 22881220 chr3R 22884908 22884924 Doc 4 3704 2.0 1.0 1.5 1.6 3715 chr3R 22881209 intergenic not near genes chr3R 22883066 intergenic not near genes chr3R 22884924 intergenic not near genes chr3R_4_22880001 chr3R_22880001 RAL-812 1397 chr3R 22927875 22927906 chr3R 22927970 22928000 10 93 1.0 8.0 4.5 1.8 125 chr3R 22927875 intron klg + chr3R 22927938 intron klg + chr3R 22928000 intron klg + chr3R_10_22925001 chr3R_22925001 RAL-812 1398 chr3R 22949507 22949521 chr3R 22950717 22950731 7 1210 3.0 5.0 4.0 1.4 1224 chr3R 22949507 intron klg + chr3R 22950119 intron klg + chr3R 22950731 intron klg + chr3R_7_22950001 chr3R_22950001 RAL-812 1399 chr3R 22977079 22977104 chr3R 22977172 22977197 6 93 2.5 6.0 4.2 1.2 118 chr3R 22977079 intergenic CG17244 + chr3R 22977138 intergenic CG17244 + chr3R 22977197 intergenic CG17244 + chr3R_6_22975001 chr3R_22975001 RAL-812 1400 chr3R 23090416 23090436 chr3R 23090499 23090502 8 81 3.0 5.5 4.2 1.5 86 chr3R 23090416 intron CG13830 - chr3R 23090459 intron CG13830 - chr3R 23090502 intron CG13830 - chr3R_8_23090001 chr3R_23090001 RAL-812 1401 chr3R 23091261 23091287 chr3R 23091346 23091372 9 85 2.5 2.0 2.2 2.8 111 chr3R 23091261 intron CG13830 - chr3R 23091316 intron CG13830 - chr3R 23091372 intron CG13830 - chr3R_9_23090001 chr3R_23090001 RAL-812 1402 chr3R 23143797 23143826 chr3R 23144277 23144305 11 479 2.5 5.0 3.8 2.3 508 chr3R 23143797 intergenic not near genes chr3R 23144051 intergenic not near genes chr3R 23144305 intergenic not near genes chr3R_11_23140001 chr3R_23140001 RAL-812 1403 chr3R 23176291 23176312 chr3R 23176857 23176879 9 569 3.0 3.5 3.2 2.1 588 chr3R 23176291 intron Irk1 + chr3R 23176585 intron Irk1 + chr3R 23176879 intron Irk1 + chr3R_9_23175001 chr3R_23175001 RAL-812 1404 chr3R 23323504 23323520 chr3R 24961898 24961898 4 1638388 11.5 16.5 14.0 0.3 1638394 chr3R 23323504 intron pnt - chr3R 24142701 intron Kal1 + chr3R 24961898 intergenic not near genes chr3R_4_24140001 chr3R_24140001 RAL-812 1405 chr3R 23335439 23335466 chr3R 23335517 23335544 7 78 1.5 4.0 2.8 1.8 105 chr3R 23335439 intron pnt - chr3R 23335492 intron pnt - chr3R 23335544 intron pnt - chr3R_7_23335001 chr3R_23335001 RAL-812 1406 chr3R 23360181 23360211 chr3R 23360257 23360287 4 76 0.5 4.5 2.5 1.1 106 chr3R 23360181 3` UTR RpS3 + chr3R 23360234 intergenic RpS3 + chr3R 23360287 intergenic RpS3 + chr3R_4_23360001 chr3R_23360001 RAL-812 1407 chr3R 23385590 23385608 chr3R 23385712 23385730 5 121 3.5 0.5 2.0 1.7 140 chr3R 23385590 intergenic not near genes chr3R 23385660 intergenic not near genes chr3R 23385730 intergenic not near genes chr3R_5_23385001 chr3R_23385001 RAL-812 1408 chr3R 23557227 23557245 chr3R 23557303 23557320 6 76 2.0 3.0 2.5 1.7 93 chr3R 23557227 intergenic beat-IV +,CG10164 - chr3R 23557274 intergenic beat-IV +,CG10164 - chr3R 23557320 intergenic beat-IV +,CG10164 - chr3R_6_23555001 chr3R_23555001 RAL-812 1409 chr3R 23564441 23564476 chr3R 23564585 23564620 4 144 0.5 0.5 0.5 2.7 179 chr3R 23564441 intron beat-IV + chr3R 23564530 intron beat-IV + chr3R 23564620 intron beat-IV + chr3R_4_23560001 chr3R_23560001 RAL-812 1410 chr3R 23684708 23684715 chr3R 23685185 23685185 roo 4 479 7.0 3.5 5.2 0.6 477 chr3R 23684708 intron CG18754 + chr3R 23684946 intron CG18754 + chr3R 23685185 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-812 1411 chr3R 23688473 23688494 chr3R 23688563 23688583 6 86 7.5 4.5 6.0 0.9 110 chr3R 23688473 intergenic SPE + chr3R 23688528 intergenic SPE +,CG10254 - chr3R 23688583 intergenic CG10254 -,SPE + chr3R_6_23685001 chr3R_23685001 RAL-812 1412 chr3R 23883106 23883113 chr3R 23883467 23883473 6 361 7.0 5.5 6.2 0.8 367 chr3R 23883106 intron Pli - chr3R 23883290 intron Pli - chr3R 23883473 intron Pli - chr3R_6_23880001 chr3R_23880001 RAL-812 1413 chr3R 23944910 23944930 chr3R 23944995 23945015 16 84 3.0 2.0 2.5 4.6 105 chr3R 23944910 intron CG12268 - chr3R 23944962 intron CG12268 - chr3R 23945015 intron CG12268 - chr3R_16_23940001 chr3R_23940001 RAL-812 1414 chr3R 23949040 23949070 chr3R 23949117 23949147 8 77 0.5 3.0 1.8 2.9 107 chr3R 23949040 intergenic not near genes chr3R 23949094 intergenic not near genes chr3R 23949147 intergenic not near genes chr3R_8_23945001 chr3R_23945001 RAL-812 1415 chr3R 24072089 24072116 chr3R 24072527 24072552 jockey 9 434 8.5 5.5 7.0 1.1 463 chr3R 24072089 intron 4EHP - chr3R 24072320 intron 4EHP - chr3R 24072552 intron 4EHP - chr3R_9_24070001 chr3R_24070001 RAL-812 1416 chr3R 24076915 24076947 chr3R 24078382 24078410 hobo 6 1463 5.0 3.5 4.2 1.2 1495 chr3R 24076915 intron 4EHP - chr3R 24077662 intron 4EHP - chr3R 24078410 intron 4EHP - chr3R_6_24075001 chr3R_24075001 RAL-812 1417 chr3R 24207218 24207246 chr3R 24212294 24212322 flea 11 5075 5.0 5.0 5.0 1.8 5104 chr3R 24207218 intron twin - chr3R 24209770 intron twin - chr3R 24212322 intron twin - chr3R_11_24205001 chr3R_24205001 RAL-812 1418 chr3R 24434246 24434266 chr3R 24434324 24434343 6 78 2.0 2.0 2.0 2.0 97 chr3R 24434246 intron nAChRalpha1 - chr3R 24434294 intron nAChRalpha1 - chr3R 24434343 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-812 1419 chr3R 24483827 24483855 chr3R 24484146 24484176 8 318 4.0 3.5 3.8 1.7 349 chr3R 24483827 intergenic not near genes chr3R 24484002 intergenic not near genes chr3R 24484176 intergenic not near genes chr3R_8_24480001 chr3R_24480001 RAL-812 1420 chr3R 24493277 24493304 chr3R 24493506 24493533 BS 8 228 1.5 3.0 2.2 2.5 256 chr3R 24493277 intergenic not near genes chr3R 24493405 intergenic not near genes chr3R 24493533 intergenic not near genes chr3R_8_24490001 chr3R_24490001 RAL-812 1421 chr3R 24495287 24495312 chr3R 24495366 24495391 15 78 5.0 3.0 4.0 3.0 104 chr3R 24495287 intergenic not near genes chr3R 24495339 intergenic not near genes chr3R 24495391 intergenic not near genes chr3R_15_24495001 chr3R_24495001 RAL-812 1422 chr3R 24670079 24670193 chr3R 24670189 24670278 6 93 0.0 0.0 0.0 6.0 199 chr3R 24670079 intron slo + chr3R 24670178 intron slo + chr3R 24670278 intron slo + chr3R_6_24670001 chr3R_24670001 RAL-812 1423 chr3R 24730091 24730119 chr3R 24732469 24732495 Doc 16 2376 4.0 0.5 2.2 5.0 2404 chr3R 24730091 intron tok + chr3R 24731293 intron tok + chr3R 24732495 intron tok + chr3R_16_24730001 chr3R_24730001 RAL-812 1424 chr3R 24785079 24785103 chr3R 24785155 24785176 6 76 3.0 4.0 3.5 1.3 97 chr3R 24785079 3` UTR CG5805 - chr3R 24785128 3` UTR CG5805 - chr3R 24785176 3` UTR CG5805 - chr3R_6_24785001 chr3R_24785001 RAL-812 1425 chr3R 24789989 24790010 chr3R 24790134 24790154 4 145 3.0 4.0 3.5 0.9 165 chr3R 24789989 intron,5` UTR Ets96B +,CG13634 - chr3R 24790072 intron,5` UTR Ets96B +,CG13634 - chr3R 24790154 intron Ets96B + chr3R_4_24790001 chr3R_24790001 RAL-812 1426 chr3R 24927126 24927144 chr3R 24931917 24931935 Doc 4 4791 3.5 6.5 5.0 0.7 4809 chr3R 24927126 intergenic Trf4-2 + chr3R 24929530 intergenic not near genes chr3R 24931935 intergenic CG11771 + chr3R_4_24925001 chr3R_24925001 RAL-812 1427 chr3R 24974912 24974929 chr3R 24974991 24975006 5 79 1.5 4.5 3.0 1.2 94 chr3R 24974912 intergenic not near genes chr3R 24974959 intergenic not near genes chr3R 24975006 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-812 1428 chr3R 25004901 25004919 chr3R 25004984 25005002 8 83 7.5 2.5 5.0 1.3 101 chr3R 25004901 intron tnc + chr3R 25004952 intron tnc + chr3R 25005002 intron tnc + chr3R_8_25000001 chr3R_25000001 RAL-812 1429 chr3R 25018260 25018292 chr3R 25018332 25018368 19 68 2.0 2.5 2.2 5.9 108 chr3R 25018260 exon tnc + chr3R 25018314 exon tnc + chr3R 25018368 exon tnc + chr3R_19_25015001 chr3R_25015001 RAL-812 1430 chr3R 25027536 25027566 chr3R 25027749 25027778 16 211 4.5 3.5 4.0 3.2 242 chr3R 25027536 intron Hr96 + chr3R 25027657 intron Hr96 + chr3R 25027778 intron Hr96 + chr3R_16_25025001 chr3R_25025001 RAL-812 1431 chr3R 25081892 25081924 chr3R 25081983 25082015 9 90 1.5 1.5 1.5 3.6 123 chr3R 25081892 intergenic not near genes chr3R 25081954 intergenic not near genes chr3R 25082015 intergenic not near genes chr3R_9_25080001 chr3R_25080001 RAL-812 1432 chr3R 25166367 25166390 chr3R 25166443 25166465 5 75 1.0 0.5 0.8 2.8 98 chr3R 25166367 intergenic not near genes chr3R 25166416 intergenic not near genes chr3R 25166465 intergenic not near genes chr3R_5_25165001 chr3R_25165001 RAL-812 1433 chr3R 25302677 25302711 chr3R 25302926 25302958 11 249 3.0 4.5 3.8 2.3 281 chr3R 25302677 exon CG31370 + chr3R 25302818 exon CG31370 + chr3R 25302958 exon CG31370 + chr3R_11_25300001 chr3R_25300001 RAL-812 1434 chr3R 25638854 25638867 chr3R 25638934 25638954 6 86 3.5 4.0 3.8 1.2 100 chr3R 25638854 intron jigr1 + chr3R 25638904 intron jigr1 + chr3R 25638954 intron jigr1 + chr3R_6_25635001 chr3R_25635001 RAL-812 1435 chr3R 25642590 25642622 chr3R 25642681 25642713 10 91 3.0 5.5 4.2 1.9 123 chr3R 25642590 intron jigr1 + chr3R 25642652 intron jigr1 + chr3R 25642713 intron jigr1 + chr3R_10_25640001 chr3R_25640001 RAL-812 1436 chr3R 25652314 25652346 chr3R 25652391 25652423 9 76 4.5 1.0 2.8 2.4 109 chr3R 25652314 intergenic not near genes chr3R 25652368 intergenic not near genes chr3R 25652423 intergenic not near genes chr3R_9_25650001 chr3R_25650001 RAL-812 1437 chr3R 25669066 25669087 chr3R 25669160 25669180 9 93 2.0 3.0 2.5 2.6 114 chr3R 25669066 intron Lgr3 + chr3R 25669123 intron Lgr3 + chr3R 25669180 intron Lgr3 + chr3R_9_25665001 chr3R_25665001 RAL-812 1438 chr3R 25701905 25701929 chr3R 25702045 25702069 8 138 0.5 1.0 0.8 4.4 164 chr3R 25701905 intron LpR2 - chr3R 25701987 intron LpR2 - chr3R 25702069 intron LpR2 - chr3R_8_25700001 chr3R_25700001 RAL-812 1439 chr3R 25796379 25796398 chr3R 25796458 25796474 6 78 5.0 0.0 2.5 1.7 95 chr3R 25796379 intergenic CR43847 - chr3R 25796426 intergenic CR43847 - chr3R 25796474 intergenic CR43847 - chr3R_6_25795001 chr3R_25795001 RAL-812 1440 chr3R 25832704 25832723 chr3R 25841875 25841905 roo 9 9180 2.0 3.5 2.8 2.4 9201 chr3R 25832704 exon alpha4GT2 + chr3R 25837304 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-812 1441 chr3R 25861834 25861847 chr3R 25861907 25861924 4 75 1.5 2.0 1.8 1.4 90 chr3R 25861834 intron CG5890 + chr3R 25861879 intron CG5890 + chr3R 25861924 intron CG5890 + chr3R_4_25860001 chr3R_25860001 RAL-812 1442 chr3R 25927525 25927535 chr3R 25927607 25927617 4 82 1.0 0.0 0.5 2.7 92 chr3R 25927525 intron CCAP-R - chr3R 25927571 intron CCAP-R - chr3R 25927617 intron CCAP-R - chr3R_4_25925001 chr3R_25925001 RAL-812 1443 chr3R 25983700 25983723 chr3R 25983798 25983821 12 97 7.5 1.0 4.2 2.3 121 chr3R 25983700 exon Nf1 + chr3R 25983760 intron Nf1 + chr3R 25983821 intron Nf1 + chr3R_12_25980001 chr3R_25980001 RAL-812 1444 chr3R 26063198 26063227 chr3R 26063292 26063321 4 93 1.0 0.0 0.5 2.7 123 chr3R 26063198 intergenic CG14551 - chr3R 26063260 intergenic CG14551 - chr3R 26063321 intergenic CG14551 - chr3R_4_26060001 chr3R_26060001 RAL-812 1445 chr3R 26325365 26325380 chr3R 26325452 26325467 6 87 5.5 0.0 2.8 1.6 102 chr3R 26325365 intron CG33970 + chr3R 26325416 intron CG33970 + chr3R 26325467 intron CG33970 + chr3R_6_26325001 chr3R_26325001 RAL-812 1446 chr3R 26365113 26365116 chr3R 26365198 26365201 5 85 3.5 0.0 1.8 1.8 88 chr3R 26365113 intergenic not near genes chr3R 26365157 intergenic not near genes chr3R 26365201 intergenic not near genes chr3R_5_26365001 chr3R_26365001 RAL-812 1447 chr3R 26376322 26376357 chr3R 26385482 26385516 roo 8 9158 3.5 0.5 2.0 2.7 9194 chr3R 26376322 intergenic not near genes chr3R 26380919 intergenic not near genes chr3R 26385516 intergenic not near genes chr3R_8_26380001 chr3R_26380001 RAL-812 1448 chr3R 26413276 26413301 chr3R 26413368 26413379 7 92 3.5 2.0 2.8 1.8 103 chr3R 26413276 intergenic not near genes chr3R 26413328 intergenic not near genes chr3R 26413379 intergenic not near genes chr3R_7_26410001 chr3R_26410001 RAL-812 1449 chr3R 26558325 26558358 chr3R 26565638 26565670 Stalker4 8 7309 2.0 4.0 3.0 2.0 7345 chr3R 26558325 intron scrib + chr3R 26561998 intron scrib + chr3R 26565670 intron scrib + chr3R_8_26560001 chr3R_26560001 RAL-812 1450 chr3R 26641636 26641660 chr3R 26641723 26641745 4 82 5.5 0.5 3.0 1.0 109 chr3R 26641636 intergenic not near genes chr3R 26641690 intergenic not near genes chr3R 26641745 intergenic not near genes chr3R_4_26640001 chr3R_26640001 RAL-812 1451 chr3R 26642728 26642757 chr3R 26643121 26643151 jockey 8 394 6.5 1.0 3.8 1.7 423 chr3R 26642728 intergenic not near genes chr3R 26642940 intergenic not near genes chr3R 26643151 intergenic not near genes chr3R_8_26640001 chr3R_26640001 RAL-812 1452 chr3R 26669662 26669683 chr3R 26669744 26669765 4 82 1.0 3.0 2.0 1.3 103 chr3R 26669662 intron beat-VII - chr3R 26669714 intron beat-VII - chr3R 26669765 intron beat-VII - chr3R_4_26665001 chr3R_26665001 RAL-812 1453 chr3R 26814653 26814687 chr3R 26814729 26814763 9 76 1.0 2.5 1.8 3.2 110 chr3R 26814653 intron Tl + chr3R 26814708 intron Tl + chr3R 26814763 intron Tl + chr3R_9_26810001 chr3R_26810001 RAL-812 1454 chr3R 26845571 26845602 chr3R 26845651 26845682 19 79 2.0 5.5 3.8 4.0 111 chr3R 26845571 intron Lerp - chr3R 26845626 intron Lerp - chr3R 26845682 intron Lerp - chr3R_19_26845001 chr3R_26845001 RAL-812 1455 chr3R 27007419 27007436 chr3R 27016554 27016571 roo 4 9135 0.5 1.5 1.0 2.0 9152 chr3R 27007419 intron RYa-R + chr3R 27011995 intron RYa-R + chr3R 27016571 intron RYa-R + chr3R_4_27010001 chr3R_27010001 RAL-812 1456 chr3R 27140518 27140548 chr3R 27148127 27148157 412 15 7609 4.0 7.5 5.8 2.2 7639 chr3R 27140518 intron CG6051 - chr3R 27144338 intron CG6051 - chr3R 27148157 intron CG6051 - chr3R_15_27140001 chr3R_27140001 RAL-812 1457 chr3R 27301277 27301304 chr3R 27301364 27301391 6 87 1.5 1.0 1.2 2.7 114 chr3R 27301277 intron CG3339 - chr3R 27301334 intron CG3339 - chr3R 27301391 intron CG3339 - chr3R_6_27300001 chr3R_27300001 RAL-812 1458 chr3R 27342804 27342817 chr3R 27351384 27351398 Tirant 4 8580 5.0 5.0 5.0 0.7 8594 chr3R 27342804 intron CG42534 + chr3R 27347101 intron CG42534 + chr3R 27351398 intron CG42534 + chr3R_4_27345001 chr3R_27345001 RAL-812 1459 chr3R 27377476 27377502 chr3R 27377560 27377575 7 85 3.5 4.5 4.0 1.4 99 chr3R 27377476 3` UTR side - chr3R 27377526 3` UTR side - chr3R 27377575 3` UTR side - chr3R_7_27375001 chr3R_27375001 RAL-812 1460 chr3R 27385707 27385720 chr3R 27385977 27385990 7 270 0.5 6.5 3.5 1.6 283 chr3R 27385707 intron side - chr3R 27385848 intron side - chr3R 27385990 intron side - chr3R_7_27385001 chr3R_27385001 RAL-812 1461 chr3R 27546370 27546391 chr3R 27546659 27546681 7 290 3.0 4.5 3.8 1.5 311 chr3R 27546370 exon Gr98d + chr3R 27546526 exon Gr98d + chr3R 27546681 exon Gr98d + chr3R_7_27545001 chr3R_27545001 RAL-812 1462 chr3R 27577409 27577434 chr3R 27577491 27577516 17 81 7.0 3.5 5.2 2.7 107 chr3R 27577409 intron wdb - chr3R 27577462 intron wdb - chr3R 27577516 intron wdb - chr3R_17_27575001 chr3R_27575001 RAL-812 1463 chr3R 27627092 27627118 chr3R 27627187 27627216 11 98 4.0 5.0 4.5 2.0 124 chr3R 27627092 intron Tusp + chr3R 27627154 intron Tusp + chr3R 27627216 intron Tusp + chr3R_11_27625001 chr3R_27625001 RAL-812 1464 chr3R 27705357 27705385 chr3R 27705436 27705451 11 74 1.5 3.5 2.5 3.1 94 chr3R 27705357 exon CG12428 - chr3R 27705404 intron CG12428 - chr3R 27705451 intron CG12428 - chr3R_11_27705001 chr3R_27705001 RAL-812 1465 chr3R 27725566 27725580 chr3R 27731008 27731022 I-element 10 5442 3.5 1.5 2.5 2.9 5456 chr3R 27725566 intergenic not near genes chr3R 27728294 intergenic not near genes chr3R 27731022 intergenic not near genes chr3R_10_27725001 chr3R_27725001 RAL-812 1466 chr3R 27765924 27765955 chr3R 27766131 27766161 7 205 3.0 0.5 1.8 2.5 237 chr3R 27765924 intergenic not near genes chr3R 27766042 intergenic not near genes chr3R 27766161 intergenic not near genes chr3R_7_27765001 chr3R_27765001 RAL-812 1467 chr3R 27789084 27789114 chr3R 27789159 27789180 11 71 2.5 4.5 3.5 2.4 96 chr3R 27789084 exon CG34353 - chr3R 27789132 intron CG34353 - chr3R 27789180 intron CG34353 - chr3R_11_27785001 chr3R_27785001 RAL-812 1468 chr3R 27799936 27799964 chr3R 27800018 27800046 8 82 4.0 1.5 2.8 2.1 110 chr3R 27799936 intron CG34353 - chr3R 27799991 intron CG34353 - chr3R 27800046 intron CG34353 - chr3R_8_27795001 chr3R_27795001 RAL-812 1469 chr3R 27820033 27820044 chr3R 27820118 27820130 5 86 2.5 1.0 1.8 1.8 97 chr3R 27820033 intron CG34353 - chr3R 27820082 intron CG34353 - chr3R 27820130 intron CG34353 - chr3R_5_27820001 chr3R_27820001 RAL-812 1470 chr3R 27856761 27856786 chr3R 27858244 27858269 hopper2 10 1483 3.0 2.5 2.8 2.6 1508 chr3R 27856761 intron CG34353 - chr3R 27857515 intron CG34353 - chr3R 27858269 intron CG34353 - chr3R_10_27855001 chr3R_27855001 RAL-812 1471 chr3R 27904614 27904651 chr3R 27904695 27904735 8 81 1.5 0.5 1.0 4.0 121 chr3R 27904614 intron CG34353 - chr3R 27904674 intron CG34353 - chr3R 27904735 intron CG34353 - chr3R_8_27900001 chr3R_27900001 RAL-812 1472 chr3R 27973854 27973882 chr3R 27973935 27973963 16 80 3.0 1.5 2.2 5.0 109 chr3R 27973854 intron betaTub97EF - chr3R 27973908 intron betaTub97EF - chr3R 27973963 intron betaTub97EF - chr3R_16_27970001 chr3R_27970001 RAL-812 1473 chr3R 28017957 28017978 chr3R 28018038 28018069 11 90 4.0 3.5 3.8 2.3 112 chr3R 28017957 intergenic not near genes chr3R 28018013 intergenic not near genes chr3R 28018069 intergenic not near genes chr3R_11_28015001 chr3R_28015001 RAL-812 1474 chr3R 28068492 28068530 chr3R 28073934 28073972 I-element 8 5442 1.5 3.0 2.2 2.5 5480 chr3R 28068492 intron CG34362 + chr3R 28071232 intron CG34362 + chr3R 28073972 intron CG34362 + chr3R_8_28070001 chr3R_28070001 RAL-812 1475 chr3R 28131426 28131445 chr3R 28131608 28131625 5 182 3.0 2.0 2.5 1.4 199 chr3R 28131426 intergenic not near genes chr3R 28131526 intergenic not near genes chr3R 28131625 intergenic not near genes chr3R_5_28130001 chr3R_28130001 RAL-812 1476 chr3R 28152344 28152360 chr3R 28152421 28152437 4 77 5.5 1.5 3.5 0.9 93 chr3R 28152344 intron CG34354 + chr3R 28152390 intron CG34354 + chr3R 28152437 intron CG34354 + chr3R_4_28150001 chr3R_28150001 RAL-812 1477 chr3R 28173676 28173687 chr3R 28181106 28181117 mdg1 4 7430 0.0 2.5 1.2 1.8 7441 chr3R 28173676 intron CG34354 + chr3R 28177396 intron CG34354 + chr3R 28181117 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-812 1478 chr3R 28253343 28253371 chr3R 28255846 28255881 jockey 15 2509 5.0 3.0 4.0 3.0 2538 chr3R 28253343 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255881 intergenic not near genes chr3R_15_28250001 chr3R_28250001 RAL-812 1479 chr3R 28282991 28283019 chr3R 28283620 28283648 4 629 2.0 5.5 3.8 0.8 657 chr3R 28282991 exon CG34436 + chr3R 28283320 exon CG34436 + chr3R 28283648 intergenic CG34437 +,CG34436 + chr3R_4_28280001 chr3R_28280001 RAL-812 1480 chr3R 28345647 28345665 chr3R 28345723 28345741 8 76 0.5 3.5 2.0 2.7 94 chr3R 28345647 intergenic Moca-cyp + chr3R 28345694 intergenic not near genes chr3R 28345741 intergenic not near genes chr3R_8_28345001 chr3R_28345001 RAL-812 1481 chr3R 28424180 28424197 chr3R 28424269 28424286 9 89 3.0 3.0 3.0 2.2 106 chr3R 28424180 intron beat-VI + chr3R 28424233 intron beat-VI + chr3R 28424286 intron beat-VI + chr3R_9_28420001 chr3R_28420001 RAL-812 1482 chr3R 28441987 28442017 chr3R 28442082 28442111 8 95 3.0 2.5 2.8 2.1 124 chr3R 28441987 intron beat-VI + chr3R 28442049 intron beat-VI + chr3R 28442111 intron beat-VI + chr3R_8_28440001 chr3R_28440001 RAL-812 1483 chr3R 28484353 28484375 chr3R 28486270 28486292 55 1918 39.5 67.0 53.2 1.0 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_55_28485001 chr3R_28485001 RAL-812 1484 chr3R 28632917 28632945 chr3R 28632993 28633022 14 76 2.5 4.5 3.5 3.1 105 chr3R 28632917 intron CG10011 - chr3R 28632970 intron CG10011 - chr3R 28633022 intron CG10011 - chr3R_14_28630001 chr3R_28630001 RAL-812 1485 chr3R 28687090 28687126 chr3R 28687169 28687203 14 77 3.5 3.0 3.2 3.3 113 chr3R 28687090 intron CG9990 + chr3R 28687146 intron CG9990 + chr3R 28687203 intron CG9990 + chr3R_14_28685001 chr3R_28685001 RAL-812 1486 chr3R 28787949 28787973 chr3R 28788059 28788083 9 110 3.0 3.0 3.0 2.2 134 chr3R 28787949 intergenic not near genes chr3R 28788016 intergenic not near genes chr3R 28788083 intergenic not near genes chr3R_9_28785001 chr3R_28785001 RAL-812 1487 chr3R 28792867 28792902 chr3R 28797962 28797987 jockey 8 5092 1.0 3.5 2.2 2.5 5120 chr3R 28792867 intergenic not near genes chr3R 28795427 intergenic not near genes chr3R 28797987 intergenic not near genes chr3R_8_28795001 chr3R_28795001 RAL-812 1488 chr3R 28830901 28830917 chr3R 28830979 28830995 6 78 4.0 2.0 3.0 1.5 94 chr3R 28830901 intron WASp - chr3R 28830948 intron WASp - chr3R 28830995 intron WASp - chr3R_6_28830001 chr3R_28830001 RAL-812 1489 chr3R 21907534 21907536 chr3R 28831799 28831802 81 6924266 24.0 22.0 23.0 3.4 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_81_25365001 chr3R_25365001 RAL-812 1490 chr3R 21907534 21907536 chr3R 29013340 29013340 7 7105805 24.0 19.5 21.8 0.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_7_25460001 chr3R_25460001 RAL-812 1491 chr3R 29079386 29079411 chr3R 29080757 29080783 NOF 10 1372 3.5 2.5 3.0 2.5 1397 chr3R 29079386 intron CG11873 + chr3R 29080084 intron CG11873 + chr3R 29080783 intron CG11873 + chr3R_10_29080001 chr3R_29080001 RAL-812 1492 chr3R 29090750 29090778 chr3R 29090866 29090895 6 117 4.0 2.0 3.0 1.5 145 chr3R 29090750 intron CG11873 + chr3R 29090822 intron CG11873 + chr3R 29090895 intron CG11873 + chr3R_6_29090001 chr3R_29090001 RAL-812 1493 chr3R 29168491 29168508 chr3R 29168578 29168595 8 85 8.0 2.0 5.0 1.3 104 chr3R 29168491 intron CG11898 + chr3R 29168543 intron CG11898 + chr3R 29168595 intron CG11898 + chr3R_8_29165001 chr3R_29165001 RAL-812 1494 chr3R 29213060 29213089 chr3R 29213143 29213172 11 83 4.5 2.5 3.5 2.4 112 chr3R 29213060 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213172 intergenic not near genes chr3R_11_29210001 chr3R_29210001 RAL-812 1495 chr3R 29236813 29236980 chr3R 29247124 29247255 4 10302 19.5 15.5 17.5 0.2 10442 chr3R 29236813 exon CG11951 - chr3R 29242034 exon CG31445 - chr3R 29247255 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-812 1496 chr3R 29237251 29237283 chr3R 29239268 29239302 13 2019 25.5 3.5 14.5 0.8 2051 chr3R 29237251 exon CG11951 - chr3R 29238276 intron CG11951 - chr3R 29239302 exon CG31427 - chr3R_13_29235001 chr3R_29235001 RAL-812 1497 chr3R 29238778 29238784 chr3R 29238891 29238897 4 114 2.5 4.0 3.2 1.0 119 chr3R 29238778 intergenic CG31427 -,CG11951 - chr3R 29238838 3` UTR CG31427 - chr3R 29238897 3` UTR CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-812 1498 chr3R 29256267 29256298 chr3R 29256347 29256376 9 80 3.0 3.0 3.0 2.2 109 chr3R 29256267 intergenic CG45544 +,stg - chr3R 29256322 intergenic CG45544 + chr3R 29256376 intergenic CG45544 + chr3R_9_29255001 chr3R_29255001 RAL-812 1499 chr3R 29335388 29335418 chr3R 29335530 29335560 11 141 2.5 3.5 3.0 2.8 172 chr3R 29335388 intergenic not near genes chr3R 29335474 intergenic not near genes chr3R 29335560 intergenic not near genes chr3R_11_29335001 chr3R_29335001 RAL-812 1500 chr3R 29344117 29344148 chr3R 29344304 29344336 5 183 1.5 4.5 3.0 1.2 219 chr3R 29344117 intergenic not near genes chr3R 29344226 intergenic not near genes chr3R 29344336 intergenic not near genes chr3R_5_29340001 chr3R_29340001 RAL-812 1501 chr3R 29351731 29351753 chr3R 29351816 29351838 5 84 6.0 3.0 4.5 0.9 107 chr3R 29351731 intergenic not near genes chr3R 29351784 intergenic not near genes chr3R 29351838 intergenic not near genes chr3R_5_29350001 chr3R_29350001 RAL-812 1502 chr3R 29355955 29355981 chr3R 29356034 29356061 4 79 4.5 1.0 2.8 1.1 106 chr3R 29355955 intergenic CR45547 - chr3R 29356008 intergenic CR45547 - chr3R 29356061 intergenic CR45547 - chr3R_4_29355001 chr3R_29355001 RAL-812 1503 chr3R 29406618 29406639 chr3R 29407903 29407924 jockey 6 1285 4.5 4.0 4.2 1.2 1306 chr3R 29406618 intron Ptp99A + chr3R 29407271 intron Ptp99A + chr3R 29407924 intron Ptp99A + chr3R_6_29405001 chr3R_29405001 RAL-812 1504 chr3R 29447835 29447849 chr3R 29447927 29447956 5 97 2.0 2.0 2.0 1.7 121 chr3R 29447835 intron Ptp99A + chr3R 29447896 intron Ptp99A + chr3R 29447956 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-812 1505 chr3R 29453753 29453783 chr3R 29453828 29453859 9 76 0.0 4.5 2.2 2.8 106 chr3R 29453753 intron Ptp99A + chr3R 29453806 intron Ptp99A + chr3R 29453859 intron Ptp99A + chr3R_9_29450001 chr3R_29450001 RAL-812 1506 chr3R 29472030 29472037 chr3R 29472107 29472130 5 89 2.5 6.5 4.5 0.9 100 chr3R 29472030 intron Ptp99A + chr3R 29472080 intron Ptp99A + chr3R 29472130 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-812 1507 chr3R 29505894 29505926 chr3R 29505971 29506003 6 76 2.0 3.0 2.5 1.7 109 chr3R 29505894 intergenic not near genes chr3R 29505948 intergenic not near genes chr3R 29506003 intergenic not near genes chr3R_6_29505001 chr3R_29505001 RAL-812 1508 chr3R 29539437 29539459 chr3R 29539506 29539535 10 75 3.0 0.0 1.5 4.0 98 chr3R 29539437 intergenic not near genes chr3R 29539486 intergenic not near genes chr3R 29539535 intergenic not near genes chr3R_10_29535001 chr3R_29535001 RAL-812 1509 chr3R 29546752 29546782 chr3R 29546828 29546858 9 71 2.5 5.0 3.8 1.9 106 chr3R 29546752 intergenic not near genes chr3R 29546805 intergenic not near genes chr3R 29546858 intergenic not near genes chr3R_9_29545001 chr3R_29545001 RAL-812 1510 chr3R 29550255 29550270 chr3R 29550336 29550351 4 80 3.5 2.5 3.0 1.0 96 chr3R 29550255 intergenic not near genes chr3R 29550303 intergenic not near genes chr3R 29550351 intergenic not near genes chr3R_4_29550001 chr3R_29550001 RAL-812 1511 chr3R 29624959 29624984 chr3R 29625035 29625060 8 75 5.0 5.5 5.2 1.3 101 chr3R 29624959 intergenic not near genes chr3R 29625010 intergenic not near genes chr3R 29625060 intergenic not near genes chr3R_8_29625001 chr3R_29625001 RAL-812 1512 chr3R 29631526 29631563 chr3R 29631608 29631644 13 81 1.0 4.5 2.8 3.4 118 chr3R 29631526 3` UTR Dop1R2 - chr3R 29631585 3` UTR Dop1R2 - chr3R 29631644 3` UTR Dop1R2 - chr3R_13_29630001 chr3R_29630001 RAL-812 1513 chr3R 29738263 29738298 chr3R 29739729 29739754 hobo 13 1466 0.5 3.5 2.0 4.3 1491 chr3R 29738263 intergenic CG1969 +,CG7598 + chr3R 29739008 intron CG1969 + chr3R 29739754 5` UTR CG1969 + chr3R_13_29735001 chr3R_29735001 RAL-812 1514 chr3R 29758942 29758971 chr3R 29759014 29759049 11 77 5.0 6.0 5.5 1.7 107 chr3R 29758942 3` UTR CR44953 - chr3R 29758996 3` UTR CR44953 - chr3R 29759049 intergenic CR44953 - chr3R_11_29755001 chr3R_29755001 RAL-812 1515 chr3R 29881015 29881032 chr3R 29881100 29881116 8 86 2.5 2.0 2.2 2.5 101 chr3R 29881015 intron CG31038 + chr3R 29881066 intron CG31038 + chr3R 29881116 intron CG31038 + chr3R_8_29880001 chr3R_29880001 RAL-812 1516 chr3R 29882022 29882050 chr3R 29891179 29891207 roo 8 9157 5.0 5.0 5.0 1.3 9185 chr3R 29882022 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891207 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-812 1517 chr3R 29950577 29950594 chr3R 29950654 29950654 9 75 4.5 5.0 4.8 1.6 77 chr3R 29950577 intergenic TkR99D - chr3R 29950616 intergenic TkR99D - chr3R 29950654 intergenic TkR99D - chr3R_9_29950001 chr3R_29950001 RAL-812 1518 chr3R 29963475 29963512 chr3R 29963577 29963603 14 99 1.5 5.0 3.2 3.3 128 chr3R 29963475 intron TkR99D - chr3R 29963539 intron TkR99D - chr3R 29963603 intron TkR99D - chr3R_14_29960001 chr3R_29960001 RAL-812 1519 chr3R 29966062 29966073 chr3R 29966139 29966150 4 76 3.0 7.5 5.2 0.6 88 chr3R 29966062 intron TkR99D - chr3R 29966106 intron TkR99D - chr3R 29966150 intron TkR99D - chr3R_4_29965001 chr3R_29965001 RAL-812 1520 chr3R 30075573 30075588 chr3R 30075662 30075676 5 89 0.5 4.0 2.2 1.6 103 chr3R 30075573 intron sima + chr3R 30075624 intron sima + chr3R 30075676 intron sima + chr3R_5_30075001 chr3R_30075001 RAL-812 1521 chr3R 30080463 30080479 chr3R 30080542 30080556 7 79 2.5 4.0 3.2 1.7 93 chr3R 30080463 intron sima + chr3R 30080510 intron sima + chr3R 30080556 intron sima + chr3R_7_30080001 chr3R_30080001 RAL-812 1522 chr3R 30084867 30084873 chr3R 30086334 30086340 hobo 5 1467 0.0 5.0 2.5 1.4 1473 chr3R 30084867 intron sima + chr3R 30085604 intron sima + chr3R 30086340 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-812 1523 chr3R 30084875 30084883 chr3R 30086332 30086350 hobo 5 1464 0.0 5.0 2.5 1.4 1475 chr3R 30084875 intron sima + chr3R 30085612 intron sima + chr3R 30086350 intron sima + chr3R_5_30085001 chr3R_30085001 RAL-812 1524 chr3R 30268245 30268448 chr3R 30268324 30268529 14 78 3.5 3.5 3.5 3.1 284 chr3R 30268245 intergenic not near genes chr3R 30268387 intergenic not near genes chr3R 30268529 intergenic not near genes chr3R_14_30265001 chr3R_30265001 RAL-812 1525 chr3R 30298550 30298569 chr3R 30298637 30298660 5 90 0.5 3.5 2.0 1.7 110 chr3R 30298550 intron hdc + chr3R 30298605 intron hdc + chr3R 30298660 intron hdc + chr3R_5_30295001 chr3R_30295001 RAL-812 1526 chr3R 30307122 30307153 chr3R 30307199 30307234 15 77 3.5 1.5 2.5 4.3 112 chr3R 30307122 intron hdc + chr3R 30307178 intron hdc + chr3R 30307234 intron hdc + chr3R_15_30305001 chr3R_30305001 RAL-812 1527 chr3R 30332030 30332055 chr3R 30332109 30332134 10 77 4.0 2.0 3.0 2.5 104 chr3R 30332030 intron hdc + chr3R 30332082 intron hdc + chr3R 30332134 intron hdc + chr3R_10_30330001 chr3R_30330001 RAL-812 1528 chr3R 30375540 30375572 chr3R 30383165 30383197 412 6 7624 0.5 3.5 2.0 2.0 7657 chr3R 30375540 intergenic not near genes chr3R 30379368 intergenic not near genes chr3R 30383197 intergenic not near genes chr3R_6_30375001 chr3R_30375001 RAL-812 1529 chr3R 30396224 30396243 chr3R 30404490 30404509 roo 4 8266 3.5 3.5 3.5 0.9 8285 chr3R 30396224 intergenic not near genes chr3R 30400366 intergenic not near genes chr3R 30404509 5` UTR CR45570 + chr3R_4_30400001 chr3R_30400001 RAL-812 1530 chr3R 30458010 30458047 chr3R 30458090 30458127 13 78 2.0 1.0 1.5 5.2 117 chr3R 30458010 intron CG2224 - chr3R 30458068 intron CG2224 - chr3R 30458127 intron CG2224 - chr3R_13_30455001 chr3R_30455001 RAL-812 1531 chr3R 30480472 30480510 chr3R 30482940 30482978 jockey 10 2467 2.5 5.5 4.0 2.0 2506 chr3R 30480472 intron PH4alphaEFB + chr3R 30481725 intron PH4alphaEFB + chr3R 30482978 intron PH4alphaEFB + chr3R_10_30480001 chr3R_30480001 RAL-812 1532 chr3R 30485057 30485071 chr3R 30485133 30485147 4 76 1.5 2.0 1.8 1.4 90 chr3R 30485057 intron PH4alphaEFB + chr3R 30485102 intron PH4alphaEFB + chr3R 30485147 intron PH4alphaEFB + chr3R_4_30485001 chr3R_30485001 RAL-812 1533 chr3R 30627601 30627635 chr3R 30627681 30627715 10 77 4.0 5.0 4.5 1.8 114 chr3R 30627601 3` UTR CG2267 - chr3R 30627658 exon CG2267 - chr3R 30627715 exon CG2267 - chr3R_10_30625001 chr3R_30625001 RAL-812 1534 chr3R 30672330 30672352 chr3R 30672453 30672474 7 123 1.5 4.0 2.8 1.8 144 chr3R 30672330 intergenic not near genes chr3R 30672402 intergenic not near genes chr3R 30672474 intergenic not near genes chr3R_7_30670001 chr3R_30670001 RAL-812 1535 chr3R 30679518 30679552 chr3R 30686986 30687021 blood 6 7468 2.5 6.0 4.2 1.2 7503 chr3R 30679518 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_6_30680001 chr3R_30680001 RAL-812 1536 chr3R 30690161 30690192 chr3R 30690245 30690271 11 80 3.0 3.0 3.0 2.8 110 chr3R 30690161 intergenic Spn100A + chr3R 30690216 intergenic Spn100A + chr3R 30690271 intergenic Spn100A + chr3R_11_30690001 chr3R_30690001 RAL-812 1537 chr3R 30700869 30700879 chr3R 30700992 30701000 5 123 2.5 1.0 1.8 1.8 131 chr3R 30700869 intergenic not near genes chr3R 30700934 intergenic not near genes chr3R 30701000 intergenic not near genes chr3R_5_30700001 chr3R_30700001 RAL-812 1538 chr3R 30948078 30948109 chr3R 30948269 30948300 11 191 3.0 4.0 3.5 2.4 222 chr3R 30948078 intergenic not near genes chr3R 30948189 intergenic not near genes chr3R 30948300 intergenic not near genes chr3R_11_30945001 chr3R_30945001 RAL-812 1539 chr3R 30973990 30974022 chr3R 30974103 30974135 9 110 3.5 3.5 3.5 2.0 145 chr3R 30973990 intron 5-HT7 - chr3R 30974062 intron 5-HT7 - chr3R 30974135 intron 5-HT7 - chr3R_9_30970001 chr3R_30970001 RAL-812 1540 chr3R 30982598 30982631 chr3R 30982687 30982700 4 78 3.0 2.5 2.8 1.1 102 chr3R 30982598 intron 5-HT7 - chr3R 30982649 intron 5-HT7 - chr3R 30982700 intron 5-HT7 - chr3R_4_30980001 chr3R_30980001 RAL-812 1541 chr3R 31010668 31010688 chr3R 31010748 31010768 9 80 2.0 3.0 2.5 2.6 100 chr3R 31010668 intron 5-HT7 - chr3R 31010718 intron 5-HT7 - chr3R 31010768 intron 5-HT7 - chr3R_9_31010001 chr3R_31010001 RAL-812 1542 chr3R 31042113 31042142 chr3R 31042200 31042225 10 86 4.5 4.5 4.5 1.8 112 chr3R 31042113 intron CanA1 + chr3R 31042169 intron CanA1 + chr3R 31042225 intron CanA1 + chr3R_10_31040001 chr3R_31040001 RAL-812 1543 chr3R 31074233 31074260 chr3R 31081831 31081858 springer 7 7598 6.5 5.0 5.8 1.0 7625 chr3R 31074233 intron Sox100B + chr3R 31078046 intron Sox100B + chr3R 31081858 intron Sox100B + chr3R_7_31075001 chr3R_31075001 RAL-812 1544 chr3R 31137160 31137179 chr3R 31137234 31137257 8 78 5.5 1.5 3.5 1.8 97 chr3R 31137160 intron Gycbeta100B + chr3R 31137208 intron Gycbeta100B + chr3R 31137257 intron Gycbeta100B + chr3R_8_31135001 chr3R_31135001 RAL-812 1545 chr3R 31265243 31265272 chr3R 31265318 31265353 10 80 3.5 3.0 3.2 2.4 110 chr3R 31265243 intergenic ppk24 + chr3R 31265298 intergenic ppk24 + chr3R 31265353 intergenic ppk24 + chr3R_10_31265001 chr3R_31265001 RAL-812 1546 chr3R 31279372 31279409 chr3R 31285562 31285563 diver 15 6183 4.0 2.5 3.2 3.6 6191 chr3R 31279372 intergenic not near genes chr3R 31282468 intergenic not near genes chr3R 31285563 intergenic not near genes chr3R_15_31280001 chr3R_31280001 RAL-812 1547 chr3R 31413087 31413116 chr3R 31418287 31418314 copia 11 5200 2.0 3.5 2.8 2.9 5227 chr3R 31413087 intron Gprk2 + chr3R 31415700 intron Gprk2 + chr3R 31418314 intron Gprk2 + chr3R_11_31415001 chr3R_31415001 RAL-812 1548 chr3R 31426878 31426902 chr3R 31426970 31426993 7 91 2.0 3.0 2.5 2.0 115 chr3R 31426878 intron Gprk2 + chr3R 31426936 intron Gprk2 + chr3R 31426993 intron Gprk2 + chr3R_7_31425001 chr3R_31425001 RAL-812 1549 chr3R 31431107 31431130 chr3R 31431193 31431216 8 84 3.5 2.0 2.8 2.1 109 chr3R 31431107 intron Gprk2 + chr3R 31431162 intron Gprk2 + chr3R 31431216 intron Gprk2 + chr3R_8_31430001 chr3R_31430001 RAL-812 1550 chr3R 31539862 31539881 chr3R 31539947 31539966 10 85 3.5 3.0 3.2 2.4 104 chr3R 31539862 intergenic not near genes chr3R 31539914 intergenic not near genes chr3R 31539966 intergenic not near genes chr3R_10_31535001 chr3R_31535001 RAL-812 1551 chr3R 31691535 31691560 chr3R 31696296 31696325 Doc 17 4764 5.5 6.0 5.8 2.5 4790 chr3R 31691535 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696325 intergenic not near genes chr3R_17_31690001 chr3R_31690001 RAL-812 1552 chr3R 31858764 31858781 chr3R 31858829 31858867 4 71 3.0 1.0 2.0 1.3 103 chr3R 31858764 intron heph - chr3R 31858816 intron heph - chr3R 31858867 intron heph - chr3R_4_31855001 chr3R_31855001 RAL-812 1553 chr3R 31887576 31887606 chr3R 31887656 31887687 5 81 1.5 0.0 0.8 2.8 111 chr3R 31887576 intron heph - chr3R 31887632 intron heph - chr3R 31887687 intron heph - chr3R_5_31885001 chr3R_31885001 RAL-812 1554 chr3R 31930898 31930905 chr3R 31931009 31931016 4 111 3.5 5.0 4.2 0.8 118 chr3R 31930898 intron heph - chr3R 31930957 intron heph - chr3R 31931016 intron heph - chr3R_4_31930001 chr3R_31930001 RAL-812 1555 chr3R 31997994 31998022 chr3R 32005461 32005468 blood 11 7467 2.0 1.0 1.5 4.4 7474 chr3R 31997994 intron heph - chr3R 32001731 intron heph - chr3R 32005468 intron heph - chr3R_11_32000001 chr3R_32000001 RAL-812 1556 chr3R 32009991 32010007 chr3R 32010116 32010130 6 124 3.5 2.5 3.0 1.5 139 chr3R 32009991 intron heph - chr3R 32010060 intron heph - chr3R 32010130 intron heph - chr3R_6_32010001 chr3R_32010001 RAL-812 1557 chr4 397375 397405 chr4 397638 397668 11 262 1.0 2.0 1.5 4.4 293 chr4 397375 intergenic not near genes chr4 397522 intergenic not near genes chr4 397668 intergenic not near genes chr4_11_395001 chr4_395001 RAL-812 1558 chr4 671607 671617 chr4 680190 680199 Tirant 6 8582 6.5 4.5 5.5 0.9 8592 chr4 671607 intron CG11360 + chr4 675903 intron CG11360 + chr4 680199 intron CG11360 + chr4_6_675001 chr4_675001 RAL-812 1559 chr4 959622 959654 chr4 959801 959832 9 179 0.5 1.0 0.8 5.0 210 chr4 959622 intergenic CR44030 +,CR45201 - chr4 959727 5` UTR CR44030 + chr4 959832 5` UTR CR44030 + chr4_9_955001 chr4_955001 RAL-812 1560 chrX 428416 428450 chrX 434601 434635 3S18 6 6185 4.5 0.0 2.2 1.9 6219 chrX 428416 intron CG32816 - chrX 431526 intron CG32816 - chrX 434635 intron CG32816 - chrX_6_430001 chrX_430001 RAL-812 1561 chrX 441003 441025 chrX 441080 441103 8 77 1.0 3.0 2.0 2.7 100 chrX 441003 intron CG32816 - chrX 441053 intron CG32816 - chrX 441103 intron CG32816 - chrX_8_440001 chrX_440001 RAL-812 1562 chrX 450376 450394 chrX 450454 450472 5 78 0.0 4.0 2.0 1.7 96 chrX 450376 intron CG32816 - chrX 450424 intron CG32816 - chrX 450472 intron CG32816 - chrX_5_450001 chrX_450001 RAL-812 1563 chrX 494599 494634 chrX 494691 494726 12 91 2.5 3.0 2.8 3.2 127 chrX 494599 intergenic CG17778 + chrX 494662 5` UTR CG17778 + chrX 494726 intron CG17778 + chrX_12_490001 chrX_490001 RAL-812 1564 chrX 547632 547666 chrX 547876 547909 10 243 0.0 4.0 2.0 3.3 277 chrX 547632 intron Appl + chrX 547770 intron Appl + chrX 547909 intron Appl + chrX_10_545001 chrX_545001 RAL-812 1565 chrX 551447 551453 chrX 558982 559014 412 4 7554 5.0 2.0 3.5 0.9 7567 chrX 551447 intron Appl + chrX 555230 intron Appl + chrX 559014 intron Appl + chrX_4_555001 chrX_555001 RAL-812 1566 chrX 667655 667681 chrX 667739 667765 5 84 0.5 2.5 1.5 2.0 110 chrX 667655 intergenic not near genes chrX 667710 intergenic not near genes chrX 667765 intergenic not near genes chrX_5_665001 chrX_665001 RAL-812 1567 chrX 670265 670293 chrX 670345 670373 9 79 0.0 2.5 1.2 4.1 108 chrX 670265 intergenic not near genes chrX 670319 intergenic not near genes chrX 670373 intergenic not near genes chrX_9_670001 chrX_670001 RAL-812 1568 chrX 680839 680867 chrX 680922 680950 8 82 3.0 4.5 3.8 1.7 111 chrX 680839 intergenic not near genes chrX 680894 intergenic not near genes chrX 680950 intergenic not near genes chrX_8_680001 chrX_680001 RAL-812 1569 chrX 695300 695322 chrX 695374 695382 8 70 4.5 3.0 3.8 1.7 82 chrX 695300 intron sdk + chrX 695341 intron sdk + chrX 695382 intron sdk + chrX_8_695001 chrX_695001 RAL-812 1570 chrX 778133 778157 chrX 778223 778246 11 89 6.0 1.0 3.5 2.4 113 chrX 778133 intron fz3 + chrX 778190 intron fz3 + chrX 778246 intron fz3 + chrX_11_775001 chrX_775001 RAL-812 1571 chrX 802293 802320 chrX 802362 802373 6 67 4.5 7.5 6.0 0.9 80 chrX 802293 exon CG13359 - chrX 802333 exon CG13359 - chrX 802373 exon CG13359 - chrX_6_800001 chrX_800001 RAL-812 1572 chrX 806784 806817 chrX 806879 806906 15 93 1.5 3.0 2.2 4.7 122 chrX 806784 intron Sec22 + chrX 806845 intron Sec22 + chrX 806906 intron Sec22 + chrX_15_805001 chrX_805001 RAL-812 1573 chrX 827599 827634 chrX 835391 835403 roo 12 7790 4.0 3.0 3.5 2.7 7804 chrX 827599 intron CG43867 - chrX 831501 intron CG43867 - chrX 835403 intron CG43867 - chrX_12_830001 chrX_830001 RAL-812 1574 chrX 1005223 1005244 chrX 1005811 1005825 4 584 5.0 0.5 2.8 1.1 602 chrX 1005223 intergenic not near genes chrX 1005524 intergenic not near genes chrX 1005825 intergenic not near genes chrX_4_1005001 chrX_1005001 RAL-812 1575 chrX 1053117 1053119 chrX 16983076 16983077 4 15929958 8.0 8.5 8.2 0.4 15929960 chrX 1053117 intron CR44779 + chrX 9018097 intron,intron rdgA +,CR43836 - chrX 16983077 intron CG45002 - chrX_4_9015001 chrX_9015001 RAL-812 1576 chrX 1150569 1150583 chrX 1151006 1151025 5 440 1.5 2.5 2.0 1.7 456 chrX 1150569 intergenic not near genes chrX 1150797 intergenic not near genes chrX 1151025 intergenic not near genes chrX_5_1150001 chrX_1150001 RAL-812 1577 chrX 1402266 1402291 chrX 1402624 1402642 8 357 1.5 3.0 2.2 2.5 376 chrX 1402266 intergenic not near genes chrX 1402454 intergenic not near genes chrX 1402642 intergenic not near genes chrX_8_1400001 chrX_1400001 RAL-812 1578 chrX 1428592 1428625 chrX 1428678 1428710 13 86 4.0 3.0 3.5 2.9 118 chrX 1428592 intron futsch + chrX 1428651 intron futsch + chrX 1428710 intron futsch + chrX_13_1425001 chrX_1425001 RAL-812 1579 chrX 1518041 1518065 chrX 1523436 1523467 jockey 8 5400 5.5 3.0 4.2 1.5 5426 chrX 1518041 intergenic inc + chrX 1520754 intergenic not near genes chrX 1523467 intergenic not near genes chrX_8_1520001 chrX_1520001 RAL-812 1580 chrX 1560658 1560685 chrX 1560750 1560755 5 87 2.0 2.0 2.0 1.7 97 chrX 1560658 intron Mur2B - chrX 1560706 intron Mur2B - chrX 1560755 intron Mur2B - chrX_5_1560001 chrX_1560001 RAL-812 1581 chrX 1627977 1628005 chrX 1635445 1635456 gtwin 10 7464 3.0 3.5 3.2 2.4 7479 chrX 1627977 intron,intron Mur2B -,br + chrX 1631716 intron,intron Mur2B -,br + chrX 1635456 intron,intron Mur2B -,br + chrX_10_1630001 chrX_1630001 RAL-812 1582 chrX 1674855 1674872 chrX 1674931 1674948 11 76 5.0 0.0 2.5 3.1 93 chrX 1674855 3` UTR CG32809 - chrX 1674902 3` UTR CG32809 - chrX 1674948 3` UTR CG32809 - chrX_11_1670001 chrX_1670001 RAL-812 1583 chrX 1726669 1726680 chrX 1726776 1726787 4 107 5.0 3.0 4.0 0.8 118 chrX 1726669 intergenic not near genes chrX 1726728 intergenic not near genes chrX 1726787 intergenic not near genes chrX_4_1725001 chrX_1725001 RAL-812 1584 chrX 1954888 1954916 chrX 1962826 1962827 Stalker2 6 7929 2.5 0.5 1.5 2.4 7939 chrX 1954888 intron Hr4 + chrX 1958858 intron Hr4 + chrX 1962827 intron Hr4 + chrX_6_1955001 chrX_1955001 RAL-812 1585 chrX 1987495 1987510 chrX 1987599 1987614 7 102 1.5 2.0 1.8 2.5 119 chrX 1987495 intron Hr4 + chrX 1987554 intron Hr4 + chrX 1987614 intron Hr4 + chrX_7_1985001 chrX_1985001 RAL-812 1586 chrX 2096364 2096389 chrX 2096457 2096482 9 92 1.0 1.5 1.2 4.1 118 chrX 2096364 intron csw + chrX 2096423 intron csw + chrX 2096482 intron csw + chrX_9_2095001 chrX_2095001 RAL-812 1587 chrX 2146656 2146686 chrX 2146748 2146779 6 92 3.5 4.5 4.0 1.2 123 chrX 2146656 intron Pgd + chrX 2146718 intron Pgd + chrX 2146779 intron Pgd + chrX_6_2145001 chrX_2145001 RAL-812 1588 chrX 2291641 2291672 chrX 2291724 2291731 4 76 2.0 0.0 1.0 2.0 90 chrX 2291641 intron CG2865 - chrX 2291686 intron CG2865 - chrX 2291731 intron CG2865 - chrX_4_2290001 chrX_2290001 RAL-812 1589 chrX 2399836 2399865 chrX 2408188 2408199 roo 8 8349 3.5 4.0 3.8 1.7 8363 chrX 2399836 intergenic not near genes chrX 2404018 intergenic not near genes chrX 2408199 intergenic not near genes chrX_8_2400001 chrX_2400001 RAL-812 1590 chrX 2535818 2535852 chrX 2535894 2535927 11 71 2.0 2.0 2.0 3.7 109 chrX 2535818 intron trol - chrX 2535872 intron trol - chrX 2535927 intron trol - chrX_11_2535001 chrX_2535001 RAL-812 1591 chrX 2544772 2544802 chrX 2544848 2544878 6 75 3.0 1.5 2.2 1.9 106 chrX 2544772 intron,3` UTR trol -,mir-4955 - chrX 2544825 intron,3` UTR trol -,mir-4955 - chrX 2544878 intron,3` UTR trol -,mir-4955 - chrX_6_2540001 chrX_2540001 RAL-812 1592 chrX 2578814 2578845 chrX 2578906 2578937 8 92 2.0 7.0 4.5 1.5 123 chrX 2578814 intergenic Pdfr +,Vha36-3 - chrX 2578876 intergenic Vha36-3 -,Pdfr + chrX 2578937 intergenic Vha36-3 -,Pdfr + chrX_8_2575001 chrX_2575001 RAL-812 1593 chrX 2610384 2610397 chrX 2617501 2617514 HMS-Beagle 4 7117 4.0 1.0 2.5 1.1 7130 chrX 2610384 intergenic CG8636 - chrX 2613949 intergenic not near genes chrX 2617514 intergenic Tsp3A - chrX_4_2610001 chrX_2610001 RAL-812 1594 chrX 2752240 2752259 chrX 2752319 2752341 5 80 2.5 2.0 2.2 1.6 101 chrX 2752240 intron kirre + chrX 2752290 intron kirre + chrX 2752341 intron kirre + chrX_5_2750001 chrX_2750001 RAL-812 1595 chrX 2803497 2803513 chrX 2803640 2803656 4 143 5.5 2.5 4.0 0.8 159 chrX 2803497 intron kirre + chrX 2803576 intron kirre + chrX 2803656 intron kirre + chrX_4_2800001 chrX_2800001 RAL-812 1596 chrX 2877045 2877069 chrX 2877147 2877171 5 102 1.0 3.0 2.0 1.7 126 chrX 2877045 intron kirre + chrX 2877108 intron kirre + chrX 2877171 intron kirre + chrX_5_2875001 chrX_2875001 RAL-812 1597 chrX 3058023 3058049 chrX 3058264 3058290 pogo 4 241 1.5 0.0 0.8 2.2 267 chrX 3058023 intron kirre + chrX 3058156 intron kirre + chrX 3058290 intron kirre + chrX_4_3055001 chrX_3055001 RAL-812 1598 chrX 3271692 3271706 chrX 3271768 3271783 4 74 5.0 2.5 3.8 0.8 91 chrX 3271692 intron dnc + chrX 3271738 intron dnc + chrX 3271783 intron dnc + chrX_4_3270001 chrX_3270001 RAL-812 1599 chrX 3306344 3306363 chrX 3306426 3306445 4 82 1.5 0.0 0.8 2.2 101 chrX 3306344 intron dnc + chrX 3306394 intron dnc + chrX 3306445 intron dnc + chrX_4_3305001 chrX_3305001 RAL-812 1600 chrX 3415019 3415047 chrX 3421204 3421231 3S18 8 6184 0.0 2.0 1.0 4.0 6212 chrX 3415019 intron,intron CR44999 +,CG12535 - chrX 3418125 intron,intron CR44999 +,CG12535 - chrX 3421231 intron,intron CR44999 +,CG12535 - chrX_8_3415001 chrX_3415001 RAL-812 1601 chrX 3493091 3493116 chrX 3502250 3502275 roo 8 9158 3.0 1.5 2.2 2.5 9184 chrX 3493091 intron,intron CR44999 +,Gas8 - chrX 3497683 intron,intron CR44999 +,Gas8 - chrX 3502275 intron,intron CR44999 +,Gas8 - chrX_8_3495001 chrX_3495001 RAL-812 1602 chrX 3597115 3597129 chrX 3597202 3597217 6 88 2.0 3.0 2.5 1.7 102 chrX 3597115 intron AstA-R1 + chrX 3597166 intron AstA-R1 + chrX 3597217 intron AstA-R1 + chrX_6_3595001 chrX_3595001 RAL-812 1603 chrX 3597560 3597582 chrX 3619728 3619750 roo 9 22167 4.5 2.5 3.5 2.0 22190 chrX 3597560 intron AstA-R1 + chrX 3608655 intron AstA-R1 + chrX 3619750 intron AstA-R1 + chrX_9_3605001 chrX_3605001 RAL-812 1604 chrX 3620460 3620490 chrX 3620559 3620589 6 99 1.0 1.0 1.0 3.0 129 chrX 3620460 intron AstA-R1 + chrX 3620524 intron AstA-R1 + chrX 3620589 intron AstA-R1 + chrX_6_3620001 chrX_3620001 RAL-812 1605 chrX 3726768 3726796 chrX 3730165 3730190 NOF 7 3393 2.5 0.0 1.2 3.2 3422 chrX 3726768 intron tlk + chrX 3728479 intron tlk + chrX 3730190 intron tlk + chrX_7_3725001 chrX_3725001 RAL-812 1606 chrX 3866109 3866124 chrX 3866187 3866201 5 78 1.0 1.0 1.0 2.5 92 chrX 3866109 intron yin - chrX 3866155 intron yin - chrX 3866201 intron yin - chrX_5_3865001 chrX_3865001 RAL-812 1607 chrX 3881275 3881304 chrX 3881414 3881443 7 139 2.5 3.5 3.0 1.8 168 chrX 3881275 intron VhaAC39-1 + chrX 3881359 intron VhaAC39-1 + chrX 3881443 intron VhaAC39-1 + chrX_7_3880001 chrX_3880001 RAL-812 1608 chrX 3986868 3986896 chrX 3994501 3994528 412 10 7633 2.0 3.5 2.8 2.6 7660 chrX 3986868 intergenic not near genes chrX 3990698 intergenic not near genes chrX 3994528 intergenic not near genes chrX_10_3990001 chrX_3990001 RAL-812 1609 chrX 4029527 4029561 chrX 4029717 4029726 12 186 1.5 6.5 4.0 2.4 199 chrX 4029527 intergenic not near genes chrX 4029626 intergenic not near genes chrX 4029726 intergenic not near genes chrX_12_4025001 chrX_4025001 RAL-812 1610 chrX 4157902 4157922 chrX 4164955 4164974 297 5 7052 2.0 1.0 1.5 2.0 7072 chrX 4157902 intron Fas2 - chrX 4161438 intron Fas2 - chrX 4164974 intron Fas2 - chrX_5_4160001 chrX_4160001 RAL-812 1611 chrX 4206227 4206234 chrX 4206341 4206348 6 114 1.0 1.5 1.2 2.7 121 chrX 4206227 intergenic Fas2 - chrX 4206288 intergenic Fas2 - chrX 4206348 intergenic Fas2 - chrX_6_4205001 chrX_4205001 RAL-812 1612 chrX 4337920 4337956 chrX 4338043 4338079 16 123 2.0 1.5 1.8 5.7 159 chrX 4337920 intron norpA + chrX 4338000 intron norpA + chrX 4338079 intron norpA + chrX_16_4335001 chrX_4335001 RAL-812 1613 chrX 4344674 4344708 chrX 4345491 4345525 9 815 0.0 2.5 1.2 4.1 851 chrX 4344674 intron norpA + chrX 4345100 intron norpA + chrX 4345525 intron norpA + chrX_9_4345001 chrX_4345001 RAL-812 1614 chrX 4396979 4397001 chrX 4397063 4397086 8 84 3.5 3.0 3.2 1.9 107 chrX 4396979 intron CR32773 - chrX 4397032 intron CR32773 - chrX 4397086 intron CR32773 - chrX_8_4395001 chrX_4395001 RAL-812 1615 chrX 4525337 4525352 chrX 4525433 4525447 5 95 2.0 3.5 2.8 1.3 110 chrX 4525337 intron CR32773 - chrX 4525392 intron CR32773 - chrX 4525447 intron CR32773 - chrX_5_4525001 chrX_4525001 RAL-812 1616 chrX 4660822 4660845 chrX 4660920 4660944 4 99 1.5 0.0 0.8 2.2 122 chrX 4660822 intron CG3009 - chrX 4660883 intron CG3009 - chrX 4660944 intron CG3009 - chrX_4_4660001 chrX_4660001 RAL-812 1617 chrX 4700392 4700427 chrX 4700733 4700769 jockey 5 342 2.0 0.0 1.0 2.5 377 chrX 4700392 3` UTR ctp + chrX 4700580 3` UTR ctp + chrX 4700769 3` UTR ctp + chrX_5_4700001 chrX_4700001 RAL-812 1618 chrX 4731811 4731831 chrX 4736904 4736924 jockey 8 5092 7.0 5.5 6.2 1.1 5113 chrX 4731811 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736924 intergenic not near genes chrX_8_4730001 chrX_4730001 RAL-812 1619 chrX 4763257 4763282 chrX 4763740 4763770 Stalker4 4 487 1.5 1.0 1.2 1.8 513 chrX 4763257 intergenic not near genes chrX 4763514 intergenic not near genes chrX 4763770 intergenic not near genes chrX_4_4760001 chrX_4760001 RAL-812 1620 chrX 4787233 4787266 chrX 4787326 4787359 6 93 1.5 3.5 2.5 1.7 126 chrX 4787233 intergenic not near genes chrX 4787296 intergenic not near genes chrX 4787359 intergenic not near genes chrX_6_4785001 chrX_4785001 RAL-812 1621 chrX 4792383 4792407 chrX 4792816 4792840 jockey 4 432 2.5 5.0 3.8 0.8 457 chrX 4792383 intergenic not near genes chrX 4792612 intergenic not near genes chrX 4792840 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-812 1622 chrX 4827993 4828001 chrX 4835344 4835372 Stalker4 9 7365 4.5 1.5 3.0 2.2 7379 chrX 4827993 intergenic not near genes chrX 4831682 intergenic not near genes chrX 4835372 intergenic not near genes chrX_9_4830001 chrX_4830001 RAL-812 1623 chrX 4931364 4931379 chrX 4931448 4931472 5 90 16.0 6.0 11.0 0.4 108 chrX 4931364 intron CG44774 - chrX 4931418 intron CG44774 - chrX 4931472 intron CG44774 - chrX_5_4930001 chrX_4930001 RAL-812 1624 chrX 4990046 4990075 chrX 4997260 4997289 roo 9 7214 2.5 2.5 2.5 2.6 7243 chrX 4990046 intron CR44833 - chrX 4993668 intron CR44833 - chrX 4997289 intron CR44833 - chrX_9_4990001 chrX_4990001 RAL-812 1625 chrX 5096280 5096303 chrX 5103845 5103867 springer 7 7563 3.5 2.5 3.0 1.8 7587 chrX 5096280 intron,intron CG15465 +,rg + chrX 5100074 intron,intron CG15465 +,rg + chrX 5103867 intron,intron CG15465 +,rg + chrX_7_5100001 chrX_5100001 RAL-812 1626 chrX 5345405 5345418 chrX 5345515 5345527 5 110 2.5 1.5 2.0 1.7 122 chrX 5345405 intron SK + chrX 5345466 intron SK + chrX 5345527 intron SK + chrX_5_5345001 chrX_5345001 RAL-812 1627 chrX 5473600 5473616 chrX 5473676 5473692 10 73 3.0 3.0 3.0 2.5 92 chrX 5473600 intron SPR + chrX 5473646 intron SPR + chrX 5473692 intron SPR + chrX_10_5470001 chrX_5470001 RAL-812 1628 chrX 5512034 5512063 chrX 5512135 5512167 5 102 1.0 1.5 1.2 2.3 133 chrX 5512034 intergenic not near genes chrX 5512100 intergenic not near genes chrX 5512167 intergenic not near genes chrX_5_5510001 chrX_5510001 RAL-812 1629 chrX 5884161 5884185 chrX 5884402 5884425 pogo 6 241 2.0 1.5 1.8 2.1 264 chrX 5884161 intron CR45668 - chrX 5884293 intron CR45668 - chrX 5884425 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-812 1630 chrX 6003284 6003307 chrX 6003365 6003388 7 81 1.5 4.5 3.0 1.8 104 chrX 6003284 intron CR44498 + chrX 6003336 intron CR44498 + chrX 6003388 intron CR44498 + chrX_7_6000001 chrX_6000001 RAL-812 1631 chrX 6171584 6171617 chrX 6179017 6179050 Quasimodo 4 7430 1.0 1.0 1.0 2.0 7466 chrX 6171584 intron Ca-alpha1T - chrX 6175317 intron Ca-alpha1T - chrX 6179050 intron Ca-alpha1T - chrX_4_6175001 chrX_6175001 RAL-812 1632 chrX 6335211 6335244 chrX 6337719 6337754 Tirant 7 2510 0.0 4.0 2.0 2.3 2543 chrX 6335211 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337754 intergenic CG3842 + chrX_7_6335001 chrX_6335001 RAL-812 1633 chrX 6392883 6392901 chrX 6397644 6397666 Doc 9 4764 1.0 5.0 3.0 2.2 4783 chrX 6392883 intergenic not near genes chrX 6395274 intergenic not near genes chrX 6397666 intergenic not near genes chrX_9_6395001 chrX_6395001 RAL-812 1634 chrX 6412973 6412985 chrX 6413053 6413066 5 80 3.5 0.0 1.8 1.8 93 chrX 6412973 intergenic not near genes chrX 6413020 intergenic not near genes chrX 6413066 intergenic not near genes chrX_5_6410001 chrX_6410001 RAL-812 1635 chrX 6562819 6562851 chrX 6571300 6571330 Tirant 15 8480 1.5 2.0 1.8 5.4 8511 chrX 6562819 intron CG34417 + chrX 6567074 intron CG34417 + chrX 6571330 intron CG34417 + chrX_15_6565001 chrX_6565001 RAL-812 1636 chrX 6605491 6605497 chrX 6608513 6608519 Burdock 4 3022 1.5 4.5 3.0 1.0 3028 chrX 6605491 intron pigs + chrX 6607005 intron pigs + chrX 6608519 intron pigs + chrX_4_6605001 chrX_6605001 RAL-812 1637 chrX 6737517 6737550 chrX 6737599 6737632 13 79 2.5 4.0 3.2 3.1 115 chrX 6737517 intron CG3168 - chrX 6737574 intron CG3168 - chrX 6737632 intron CG3168 - chrX_13_6735001 chrX_6735001 RAL-812 1638 chrX 6897580 6897710 chrX 6897658 6897820 8 94 1.0 1.0 1.0 4.0 240 chrX 6897580 intergenic not near genes chrX 6897700 intergenic not near genes chrX 6897820 intergenic not near genes chrX_8_6895001 chrX_6895001 RAL-812 1639 chrX 7023599 7023633 chrX 7030989 7031023 Tabor 8 7387 4.0 2.0 3.0 2.0 7424 chrX 7023599 intron CG12541 - chrX 7027311 intron CG12541 - chrX 7031023 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-812 1640 chrX 7125246 7125279 chrX 7134405 7134438 roo 9 9159 2.5 4.0 3.2 2.1 9192 chrX 7125246 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134438 intergenic not near genes chrX_9_7125001 chrX_7125001 RAL-812 1641 chrX 7475024 7475053 chrX 7475114 7475143 5 86 3.0 2.0 2.5 1.4 119 chrX 7475024 intergenic not near genes chrX 7475084 intergenic not near genes chrX 7475143 intergenic not near genes chrX_5_7475001 chrX_7475001 RAL-812 1642 chrX 7488434 7488461 chrX 7488514 7488520 4 74 2.5 2.5 2.5 1.1 86 chrX 7488434 intergenic CR45534 + chrX 7488477 intergenic CR45534 +,CG43278 - chrX 7488520 intergenic CR45534 +,CG43278 - chrX_4_7485001 chrX_7485001 RAL-812 1643 chrX 7570635 7570668 chrX 7570769 7570802 9 132 1.5 1.5 1.5 3.6 167 chrX 7570635 intergenic not near genes chrX 7570718 intergenic not near genes chrX 7570802 intergenic not near genes chrX_9_7570001 chrX_7570001 RAL-812 1644 chrX 7702511 7702525 chrX 7702602 7702617 5 91 0.5 4.5 2.5 1.4 106 chrX 7702511 intron CHES-1-like - chrX 7702564 intron CHES-1-like - chrX 7702617 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-812 1645 chrX 7702904 7702931 chrX 7703343 7703370 jockey 12 439 4.0 2.5 3.2 2.9 466 chrX 7702904 intron CHES-1-like - chrX 7703137 intron CHES-1-like - chrX 7703370 intron CHES-1-like - chrX_12_7700001 chrX_7700001 RAL-812 1646 chrX 7737167 7737181 chrX 7737249 7737263 4 82 1.0 2.5 1.8 1.4 96 chrX 7737167 intron Tom40 + chrX 7737215 intron Tom40 + chrX 7737263 intron Tom40 + chrX_4_7735001 chrX_7735001 RAL-812 1647 chrX 7784236 7784244 chrX 7784535 7784541 jockey 4 300 7.5 3.5 5.5 0.6 305 chrX 7784236 intergenic not near genes chrX 7784388 intergenic not near genes chrX 7784541 intergenic not near genes chrX_4_7780001 chrX_7780001 RAL-812 1648 chrX 7832437 7832463 chrX 7832526 7832552 6 89 1.0 1.5 1.2 2.7 115 chrX 7832437 intron CG1402 + chrX 7832494 intron CG1402 + chrX 7832552 intron CG1402 + chrX_6_7830001 chrX_7830001 RAL-812 1649 chrX 7881851 7881862 chrX 7881933 7881944 4 82 1.5 0.5 1.0 2.0 93 chrX 7881851 intergenic Ir7f -,Ir7e - chrX 7881898 intergenic Ir7f -,Ir7e - chrX 7881944 3` UTR Ir7f - chrX_4_7880001 chrX_7880001 RAL-812 1650 chrX 8031428 8031457 chrX 8035737 8035766 Juan 6 4309 3.0 0.0 1.5 2.4 4338 chrX 8031428 intergenic not near genes chrX 8033597 intergenic not near genes chrX 8035766 3` UTR CG2233 - chrX_6_8030001 chrX_8030001 RAL-812 1651 chrX 8085572 8085593 chrX 8085658 8085679 7 86 4.0 1.0 2.5 2.0 107 chrX 8085572 intron,5` UTR CG2256 -,CR45535 + chrX 8085626 intron,5` UTR CG2256 -,CR45535 + chrX 8085679 intron,5` UTR CG2256 -,CR45535 + chrX_7_8085001 chrX_8085001 RAL-812 1652 chrX 8305190 8305219 chrX 8305270 8305296 6 76 0.5 1.0 0.8 3.3 106 chrX 8305190 intron nAChRalpha3 - chrX 8305243 intron nAChRalpha3 - chrX 8305296 intron nAChRalpha3 - chrX_6_8305001 chrX_8305001 RAL-812 1653 chrX 8363045 8363067 chrX 8363262 8363286 6 216 2.5 4.0 3.2 1.4 241 chrX 8363045 intron nAChRalpha3 - chrX 8363166 intron nAChRalpha3 - chrX 8363286 intron nAChRalpha3 - chrX_6_8360001 chrX_8360001 RAL-812 1654 chrX 8364852 8364875 chrX 8365249 8365271 BS 4 397 0.5 3.0 1.8 1.4 419 chrX 8364852 intron nAChRalpha3 - chrX 8365062 intron nAChRalpha3 - chrX 8365271 intron nAChRalpha3 - chrX_4_8365001 chrX_8365001 RAL-812 1655 chrX 8536760 8536778 chrX 8536836 8536850 6 75 2.0 4.0 3.0 1.5 90 chrX 8536760 intron Nrg + chrX 8536805 intron Nrg + chrX 8536850 intron Nrg + chrX_6_8535001 chrX_8535001 RAL-812 1656 chrX 8787485 8787498 chrX 8787582 8787595 4 97 0.5 1.5 1.0 2.0 110 chrX 8787485 intron Lim1 - chrX 8787540 intron Lim1 - chrX 8787595 intron Lim1 - chrX_4_8785001 chrX_8785001 RAL-812 1657 chrX 8796651 8796661 chrX 8796737 8796748 4 86 2.5 3.0 2.8 1.1 97 chrX 8796651 intron Lim1 - chrX 8796700 intron Lim1 - chrX 8796748 intron Lim1 - chrX_4_8795001 chrX_8795001 RAL-812 1658 chrX 8922339 8922361 chrX 8922760 8922793 jockey 6 424 2.5 4.5 3.5 1.3 454 chrX 8922339 intron rdgA + chrX 8922566 intron rdgA + chrX 8922793 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-812 1659 chrX 8948760 8948781 chrX 8956270 8956291 roo 5 7510 0.0 0.0 0.0 5.0 7531 chrX 8948760 intron rdgA + chrX 8952526 intron rdgA + chrX 8956291 intron rdgA + chrX_5_8950001 chrX_8950001 RAL-812 1660 chrX 8979523 8979545 chrX 8979758 8979780 7 235 1.5 6.0 3.8 1.5 257 chrX 8979523 intron,intron rdgA +,CR43836 - chrX 8979652 intron,intron rdgA +,CR43836 - chrX 8979780 intron,intron rdgA +,CR43836 - chrX_7_8975001 chrX_8975001 RAL-812 1661 chrX 9047059 9047087 chrX 9047207 9047235 10 148 0.0 3.0 1.5 4.0 176 chrX 9047059 intron,intron CR43836 -,CG42388 + chrX 9047147 intron,intron CR43836 -,CG42388 + chrX 9047235 intron,intron CR43836 -,CG42388 + chrX_10_9045001 chrX_9045001 RAL-812 1662 chrX 9062730 9062758 chrX 9062808 9062836 5 78 0.5 0.5 0.5 3.3 106 chrX 9062730 intron CG15365 - chrX 9062783 intron CG15365 - chrX 9062836 intron CG15365 - chrX_5_9060001 chrX_9060001 RAL-812 1663 chrX 9229908 9229939 chrX 9229988 9230019 8 80 1.5 2.0 1.8 2.9 111 chrX 9229908 intron CG12121 - chrX 9229964 intron CG12121 - chrX 9230019 intron CG12121 - chrX_8_9225001 chrX_9225001 RAL-812 1664 chrX 9337940 9337973 chrX 9338032 9338065 9 92 1.0 4.5 2.8 2.4 125 chrX 9337940 intron CG34449 - chrX 9338002 intron CG34449 - chrX 9338065 exon CG34449 - chrX_9_9335001 chrX_9335001 RAL-812 1665 chrX 9398381 9398413 chrX 9398780 9398812 10 398 1.0 0.0 0.5 6.7 431 chrX 9398381 intron mgl - chrX 9398596 intron mgl - chrX 9398812 intron mgl - chrX_10_9395001 chrX_9395001 RAL-812 1666 chrX 9473859 9473882 chrX 9474088 9474117 7 233 0.5 1.5 1.0 3.5 258 chrX 9473859 intron mgl - chrX 9473988 intron mgl - chrX 9474117 intron mgl - chrX_7_9470001 chrX_9470001 RAL-812 1667 chrX 9508157 9508166 chrX 9509675 9509684 jockey 4 1516 2.0 4.5 3.2 1.0 1527 chrX 9508157 intron CG32700 - chrX 9508920 intron CG32700 - chrX 9509684 intron CG32700 - chrX_4_9505001 chrX_9505001 RAL-812 1668 chrX 9540670 9540697 chrX 9540850 9540877 13 180 3.0 2.0 2.5 3.7 207 chrX 9540670 intron CG32700 - chrX 9540774 intron CG32700 - chrX 9540877 intron CG32700 - chrX_13_9540001 chrX_9540001 RAL-812 1669 chrX 9575800 9575822 chrX 9576114 9576146 mdg3 11 321 2.5 4.0 3.2 2.6 346 chrX 9575800 intron,exon CG32699 -,CG42395 - chrX 9575973 intron,intron CG32699 -,CG42395 - chrX 9576146 intron,5` UTR CG32699 -,CG42395 - chrX_11_9575001 chrX_9575001 RAL-812 1670 chrX 9758053 9758078 chrX 9758138 9758163 5 85 2.5 0.0 1.2 2.3 110 chrX 9758053 intergenic not near genes chrX 9758108 intergenic not near genes chrX 9758163 intergenic not near genes chrX_5_9755001 chrX_9755001 RAL-812 1671 chrX 9839358 9839373 chrX 9839440 9839455 6 82 3.5 2.5 3.0 1.5 97 chrX 9839358 intron CG32698 + chrX 9839406 intron CG32698 + chrX 9839455 intron CG32698 + chrX_6_9835001 chrX_9835001 RAL-812 1672 chrX 10285898 10285907 chrX 10286233 10286241 4 335 1.5 0.5 1.0 2.0 343 chrX 10285898 intron alpha-Man-I - chrX 10286070 intron alpha-Man-I - chrX 10286241 intron alpha-Man-I - chrX_4_10285001 chrX_10285001 RAL-812 1673 chrX 10550340 10550358 chrX 10550418 10550436 5 78 2.5 0.0 1.2 2.3 96 chrX 10550340 intron spri - chrX 10550388 intron spri - chrX 10550436 intron spri - chrX_5_10550001 chrX_10550001 RAL-812 1674 chrX 10550850 10550889 chrX 10552317 10552355 hobo 12 1466 3.5 2.0 2.8 3.2 1505 chrX 10550850 intron spri - chrX 10551602 intron spri - chrX 10552355 intron spri - chrX_12_10550001 chrX_10550001 RAL-812 1675 chrX 10668668 10668696 chrX 10668936 10668963 4 267 1.5 3.0 2.2 1.2 295 chrX 10668668 intron X11Lbeta + chrX 10668816 intron X11Lbeta + chrX 10668963 intron X11Lbeta + chrX_4_10665001 chrX_10665001 RAL-812 1676 chrX 10686052 10686080 chrX 10691189 10691216 roo 10 5137 1.5 4.5 3.0 2.5 5164 chrX 10686052 intron X11Lbeta + chrX 10688634 intron X11Lbeta + chrX 10691216 intron X11Lbeta + chrX_10_10685001 chrX_10685001 RAL-812 1677 chrX 10694150 10694184 chrX 10694230 10694260 12 77 3.5 1.5 2.5 3.4 110 chrX 10694150 intron X11Lbeta + chrX 10694205 intron X11Lbeta + chrX 10694260 intron X11Lbeta + chrX_12_10690001 chrX_10690001 RAL-812 1678 chrX 10803038 10803044 chrX 10803119 10803129 5 83 8.5 4.0 6.2 0.7 91 chrX 10803038 intron Imp - chrX 10803084 intron Imp - chrX 10803129 intron Imp - chrX_5_10800001 chrX_10800001 RAL-812 1679 chrX 10803045 10803047 chrX 10803118 10803132 4 79 8.5 3.5 6.0 0.6 87 chrX 10803045 intron Imp - chrX 10803088 intron Imp - chrX 10803132 intron Imp - chrX_4_10800001 chrX_10800001 RAL-812 1680 chrX 10925502 10925523 chrX 10925578 10925602 4 78 5.5 1.5 3.5 0.9 100 chrX 10925502 exon v + chrX 10925552 3` UTR v + chrX 10925602 3` UTR v + chrX_4_10925001 chrX_10925001 RAL-812 1681 chrX 11062445 11062471 chrX 11062540 11062566 8 95 2.5 1.5 2.0 2.7 121 chrX 11062445 exon CG1537 - chrX 11062506 intron CG1537 - chrX 11062566 intron CG1537 - chrX_8_11060001 chrX_11060001 RAL-812 1682 chrX 11133930 11133966 chrX 11134514 11134550 15 586 26.5 16.0 21.2 0.7 620 chrX 11133930 intron Klp10A - chrX 11134240 intron Klp10A - chrX 11134550 intron Klp10A - chrX_15_11130001 chrX_11130001 RAL-812 1683 chrX 11141993 11142065 chrX 11142069 11142141 4 76 0.0 0.0 0.0 4.0 148 chrX 11141993 intergenic CG15199 - chrX 11142067 intergenic CG15199 -,CG15202 + chrX 11142141 intergenic CG15199 -,CG15202 + chrX_4_11140001 chrX_11140001 RAL-812 1684 chrX 11256086 11256101 chrX 11256670 11256685 8 584 5.0 2.0 3.5 1.8 599 chrX 11256086 intron CG44422 - chrX 11256386 intron CG44422 - chrX 11256685 intron CG44422 - chrX_8_11255001 chrX_11255001 RAL-812 1685 chrX 11312064 11312081 chrX 11319413 11319422 Stalker2 5 7348 4.0 1.5 2.8 1.3 7358 chrX 11312064 intergenic not near genes chrX 11315743 intergenic not near genes chrX 11319422 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-812 1686 chrX 11558285 11558304 chrX 11558369 11558388 6 83 2.5 0.0 1.2 2.7 103 chrX 11558285 intron CG1572 - chrX 11558336 intron CG1572 - chrX 11558388 intron CG1572 - chrX_6_11555001 chrX_11555001 RAL-812 1687 chrX 11633418 11633434 chrX 11640471 11640488 297 7 7054 3.5 2.0 2.8 1.8 7070 chrX 11633418 intron Ptp10D + chrX 11636953 intron Ptp10D + chrX 11640488 intron Ptp10D + chrX_7_11635001 chrX_11635001 RAL-812 1688 chrX 11719881 11719892 chrX 11719959 11719972 4 80 0.5 2.0 1.2 1.8 91 chrX 11719881 3` UTR prtp + chrX 11719926 intergenic prtp +,Tango10 + chrX 11719972 intergenic prtp +,Tango10 + chrX_4_11715001 chrX_11715001 RAL-812 1689 chrX 11922369 11922382 chrX 11922505 11922517 6 136 2.0 0.5 1.2 2.7 148 chrX 11922369 exon Sclp - chrX 11922443 intron Sclp - chrX 11922517 intron Sclp - chrX_6_11920001 chrX_11920001 RAL-812 1690 chrX 12150556 12150582 chrX 12150638 12150661 5 81 0.5 3.0 1.8 1.8 105 chrX 12150556 intron Ten-a + chrX 12150608 intron Ten-a + chrX 12150661 intron Ten-a + chrX_5_12150001 chrX_12150001 RAL-812 1691 chrX 12176738 12176768 chrX 12176812 12176844 18 75 2.0 2.5 2.2 5.6 106 chrX 12176738 intron,3` UTR Ten-a +,CG1924 - chrX 12176791 intron,3` UTR Ten-a +,CG1924 - chrX 12176844 intron,3` UTR Ten-a +,CG1924 - chrX_18_12175001 chrX_12175001 RAL-812 1692 chrX 12301955 12301986 chrX 12303261 12303290 X-element 8 1303 3.5 3.0 3.2 1.9 1335 chrX 12301955 intron Ten-a + chrX 12302622 intron Ten-a + chrX 12303290 intron Ten-a + chrX_8_12300001 chrX_12300001 RAL-812 1693 chrX 12350773 12350806 chrX 12350854 12350886 11 80 3.5 0.0 1.8 3.9 113 chrX 12350773 intergenic not near genes chrX 12350830 intergenic not near genes chrX 12350886 intergenic not near genes chrX_11_12350001 chrX_12350001 RAL-812 1694 chrX 12532644 12532660 chrX 12532790 12532806 7 146 2.0 0.0 1.0 3.5 162 chrX 12532644 intron CG43921 - chrX 12532725 intron CG43921 - chrX 12532806 intron CG43921 - chrX_7_12530001 chrX_12530001 RAL-812 1695 chrX 12557152 12557165 chrX 12557228 12557234 4 74 5.5 5.5 5.5 0.6 82 chrX 12557152 intron CG43921 - chrX 12557193 intron CG43921 - chrX 12557234 intron CG43921 - chrX_4_12555001 chrX_12555001 RAL-812 1696 chrX 12785099 12785132 chrX 12785182 12785215 11 83 3.0 2.0 2.5 3.1 116 chrX 12785099 intergenic CG32647 -,Pde9 - chrX 12785157 intergenic CG32647 -,Pde9 - chrX 12785215 intergenic CG32647 -,Pde9 - chrX_11_12785001 chrX_12785001 RAL-812 1697 chrX 12858631 12858655 chrX 12858724 12858748 7 93 4.0 1.0 2.5 2.0 117 chrX 12858631 intron Pde9 - chrX 12858690 intron Pde9 - chrX 12858748 intron Pde9 - chrX_7_12855001 chrX_12855001 RAL-812 1698 chrX 12964788 12964824 chrX 12964872 12964908 5 84 1.0 2.0 1.5 2.0 120 chrX 12964788 intergenic not near genes chrX 12964848 intergenic not near genes chrX 12964908 intergenic not near genes chrX_5_12960001 chrX_12960001 RAL-812 1699 chrX 12971687 12971707 chrX 12971764 12971784 6 73 5.5 5.5 5.5 0.9 97 chrX 12971687 intron,exon CR43636 -,CG15721 + chrX 12971736 intron,exon CR43636 -,CG15721 + chrX 12971784 intron,exon CR43636 -,CG15721 + chrX_6_12970001 chrX_12970001 RAL-812 1700 chrX 13061351 13061374 chrX 13061462 13061485 7 111 1.0 1.5 1.2 3.2 134 chrX 13061351 intron rad + chrX 13061418 intron rad + chrX 13061485 intron rad + chrX_7_13060001 chrX_13060001 RAL-812 1701 chrX 13116093 13116117 chrX 13116213 13116237 7 119 1.0 2.5 1.8 2.5 144 chrX 13116093 intron CG42237 + chrX 13116165 intron CG42237 + chrX 13116237 intron CG42237 + chrX_7_13115001 chrX_13115001 RAL-812 1702 chrX 13172350 13172379 chrX 13172426 13172455 6 76 3.5 2.0 2.8 1.6 105 chrX 13172350 exon CG34411 - chrX 13172402 intron CG34411 - chrX 13172455 intron CG34411 - chrX_6_13170001 chrX_13170001 RAL-812 1703 chrX 13236886 13236900 chrX 13236971 13236983 5 85 0.0 1.5 0.8 2.8 97 chrX 13236886 intron mew - chrX 13236934 intron mew - chrX 13236983 intron mew - chrX_5_13235001 chrX_13235001 RAL-812 1704 chrX 13429472 13429494 chrX 13430621 13430643 jockey 5 1149 0.0 2.0 1.0 2.5 1171 chrX 13429472 intergenic not near genes chrX 13430058 intergenic not near genes chrX 13430643 intergenic not near genes chrX_5_13430001 chrX_13430001 RAL-812 1705 chrX 13463652 13463676 chrX 13469229 13469253 mdg3 4 5577 0.5 0.5 0.5 2.7 5601 chrX 13463652 intron Neto + chrX 13466452 intron Neto + chrX 13469253 intron Neto + chrX_4_13465001 chrX_13465001 RAL-812 1706 chrX 13560564 13560595 chrX 13560645 13560676 10 81 2.5 2.0 2.2 3.1 112 chrX 13560564 intergenic not near genes chrX 13560620 intergenic not near genes chrX 13560676 intergenic not near genes chrX_10_13560001 chrX_13560001 RAL-812 1707 chrX 13934304 13934323 chrX 13934387 13934406 4 83 0.5 3.0 1.8 1.4 102 chrX 13934304 intron mamo - chrX 13934355 intron mamo - chrX 13934406 intron mamo - chrX_4_13930001 chrX_13930001 RAL-812 1708 chrX 13975887 13975893 chrX 13975964 13975970 4 77 0.0 2.0 1.0 2.0 83 chrX 13975887 intron mamo - chrX 13975928 intron mamo - chrX 13975970 intron mamo - chrX_4_13975001 chrX_13975001 RAL-812 1709 chrX 14105027 14105051 chrX 14114175 14114201 roo 6 9146 3.0 7.0 5.0 1.0 9174 chrX 14105027 intergenic not near genes chrX 14109614 intergenic not near genes chrX 14114201 5` UTR CR44657 + chrX_6_14105001 chrX_14105001 RAL-812 1710 chrX 14131511 14131523 chrX 14131570 14131593 6 71 1.0 5.0 3.0 1.5 82 chrX 14131511 intergenic not near genes chrX 14131552 intergenic not near genes chrX 14131593 intergenic not near genes chrX_6_14130001 chrX_14130001 RAL-812 1711 chrX 14157596 14157616 chrX 14163253 14163273 297 4 5657 2.0 1.0 1.5 1.6 5677 chrX 14157596 intergenic not near genes chrX 14160434 intergenic not near genes chrX 14163273 intergenic not near genes chrX_4_14160001 chrX_14160001 RAL-812 1712 chrX 14182721 14182735 chrX 14182796 14182808 4 75 1.0 1.0 1.0 2.0 87 chrX 14182721 exon CG11584 + chrX 14182764 exon CG11584 + chrX 14182808 exon CG11584 + chrX_4_14180001 chrX_14180001 RAL-812 1713 chrX 14300821 14300831 chrX 14300893 14300909 7 76 2.0 3.0 2.5 2.0 88 chrX 14300821 intergenic not near genes chrX 14300865 intergenic not near genes chrX 14300909 intergenic not near genes chrX_7_14300001 chrX_14300001 RAL-812 1714 chrX 14312777 14312803 chrX 14312858 14312884 6 81 1.0 2.5 1.8 2.1 107 chrX 14312777 intergenic not near genes chrX 14312830 intergenic not near genes chrX 14312884 intergenic not near genes chrX_6_14310001 chrX_14310001 RAL-812 1715 chrX 14411257 14411285 chrX 14411335 14411362 6 78 1.5 0.5 1.0 3.0 105 chrX 14411257 intron dpr8 + chrX 14411310 intron dpr8 + chrX 14411362 intron dpr8 + chrX_6_14410001 chrX_14410001 RAL-812 1716 chrX 14421472 14421484 chrX 14421630 14421640 5 158 1.5 6.5 4.0 1.0 168 chrX 14421472 intron dpr8 + chrX 14421556 intron dpr8 + chrX 14421640 intron dpr8 + chrX_5_14420001 chrX_14420001 RAL-812 1717 chrX 14484968 14484986 chrX 14485057 14485075 9 89 0.0 1.5 0.8 5.0 107 chrX 14484968 intergenic not near genes chrX 14485022 intergenic not near genes chrX 14485075 intergenic not near genes chrX_9_14485001 chrX_14485001 RAL-812 1718 chrX 14560272 14560291 chrX 14560355 14560375 6 84 3.0 1.5 2.2 1.9 103 chrX 14560272 intergenic not near genes chrX 14560324 intergenic not near genes chrX 14560375 intergenic not near genes chrX_6_14560001 chrX_14560001 RAL-812 1719 chrX 14589685 14589708 chrX 14589926 14589949 pogo 4 240 2.5 0.0 1.2 1.8 264 chrX 14589685 intron CG9413 - chrX 14589817 intron CG9413 - chrX 14589949 intron CG9413 - chrX_4_14585001 chrX_14585001 RAL-812 1720 chrX 14636465 14636493 chrX 14641906 14641934 I-element 6 5441 2.5 3.5 3.0 1.5 5469 chrX 14636465 intron NetA - chrX 14639200 intron NetA - chrX 14641934 intron NetA - chrX_6_14635001 chrX_14635001 RAL-812 1721 chrX 14649328 14649340 chrX 14649403 14649416 5 76 0.5 4.0 2.2 1.6 88 chrX 14649328 intron NetA - chrX 14649372 intron NetA - chrX 14649416 intron NetA - chrX_5_14645001 chrX_14645001 RAL-812 1722 chrX 14767946 14767976 chrX 14768026 14768056 9 80 2.0 0.0 1.0 4.5 110 chrX 14767946 intergenic not near genes chrX 14768001 intergenic not near genes chrX 14768056 intergenic not near genes chrX_9_14765001 chrX_14765001 RAL-812 1723 chrX 14968085 14968101 chrX 14968164 14968180 4 79 1.0 5.0 3.0 1.0 95 chrX 14968085 intron eag + chrX 14968132 intron eag + chrX 14968180 intron eag + chrX_4_14965001 chrX_14965001 RAL-812 1724 chrX 15273703 15273737 chrX 15274868 15274904 1360 9 1157 6.0 3.5 4.8 1.6 1201 chrX 15273703 intergenic not near genes chrX 15274304 intergenic not near genes chrX 15274904 intergenic not near genes chrX_9_15270001 chrX_15270001 RAL-812 1725 chrX 15277636 15277664 chrX 15277721 15277748 5 84 1.0 2.0 1.5 2.0 112 chrX 15277636 intergenic not near genes chrX 15277692 intergenic not near genes chrX 15277748 intergenic not near genes chrX_5_15275001 chrX_15275001 RAL-812 1726 chrX 15369846 15369860 chrX 15369929 15369943 4 83 1.5 6.5 4.0 0.8 97 chrX 15369846 intron acj6 - chrX 15369894 intron acj6 - chrX 15369943 intron acj6 - chrX_4_15365001 chrX_15365001 RAL-812 1727 chrX 15413057 15413083 chrX 15417357 15417366 Juan 5 4297 3.0 4.5 3.8 1.0 4309 chrX 15413057 intron Cngl - chrX 15415212 intron Cngl - chrX 15417366 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-812 1728 chrX 15565647 15565670 chrX 15565733 15565756 7 86 0.5 4.0 2.2 2.2 109 chrX 15565647 intergenic not near genes chrX 15565702 intergenic not near genes chrX 15565756 intergenic not near genes chrX_7_15565001 chrX_15565001 RAL-812 1729 chrX 15642229 15642244 chrX 15642628 15642643 6 399 3.5 3.0 3.2 1.4 414 chrX 15642229 intergenic CR44893 - chrX 15642436 intergenic CR44893 - chrX 15642643 intergenic not near genes chrX_6_15640001 chrX_15640001 RAL-812 1730 chrX 16059667 16059685 chrX 16059740 16059762 4 76 1.0 1.0 1.0 2.0 95 chrX 16059667 exon Muc14A + chrX 16059714 exon Muc14A + chrX 16059762 exon Muc14A + chrX_4_16055001 chrX_16055001 RAL-812 1731 chrX 16176185 16176216 chrX 16176261 16176290 10 75 4.0 3.5 3.8 2.1 105 chrX 16176185 intergenic not near genes chrX 16176238 intergenic not near genes chrX 16176290 intergenic not near genes chrX_10_16175001 chrX_16175001 RAL-812 1732 chrX 16295527 16295550 chrX 16295611 16295634 10 84 1.0 0.0 0.5 6.7 107 chrX 16295527 intron CG9911 - chrX 16295580 intron CG9911 - chrX 16295634 intron CG9911 - chrX_10_16295001 chrX_16295001 RAL-812 1733 chrX 16364985 16364995 chrX 16365067 16365077 4 82 0.5 2.5 1.5 1.6 92 chrX 16364985 intron nonA + chrX 16365031 intron nonA + chrX 16365077 intron nonA + chrX_4_16365001 chrX_16365001 RAL-812 1734 chrX 16623490 16623502 chrX 16623576 16623588 6 86 6.5 0.0 3.2 1.4 98 chrX 16623490 intergenic not near genes chrX 16623539 intergenic Rok - chrX 16623588 intergenic Rok - chrX_6_16620001 chrX_16620001 RAL-812 1735 chrX 16689623 16689655 chrX 16689709 16689717 11 70 2.5 0.5 1.5 4.4 94 chrX 16689623 intron Sep4 - chrX 16689670 intron Sep4 - chrX 16689717 intron Sep4 - chrX_11_16685001 chrX_16685001 RAL-812 1736 chrX 16690464 16690475 chrX 16690534 16690554 4 77 3.0 3.0 3.0 1.0 90 chrX 16690464 intron Sep4 - chrX 16690509 intron Sep4 - chrX 16690554 intron Sep4 - chrX_4_16690001 chrX_16690001 RAL-812 1737 chrX 16785274 16785307 chrX 16785378 16785411 8 104 0.0 2.5 1.2 3.6 137 chrX 16785274 3` UTR CG9609 - chrX 16785342 3` UTR CG9609 - chrX 16785411 3` UTR CG9609 - chrX_8_16785001 chrX_16785001 RAL-812 1738 chrX 16918309 16918333 chrX 16918397 16918421 8 88 2.5 1.0 1.8 2.9 112 chrX 16918309 intron CG4928 + chrX 16918365 intron CG4928 + chrX 16918421 intron CG4928 + chrX_8_16915001 chrX_16915001 RAL-812 1739 chrX 17063179 17063206 chrX 17063266 17063293 4 87 1.5 0.0 0.8 2.2 114 chrX 17063179 intron CG45002 - chrX 17063236 intron CG45002 - chrX 17063293 intron CG45002 - chrX_4_17060001 chrX_17060001 RAL-812 1740 chrX 17234259 17234276 chrX 17234353 17234370 7 94 3.5 0.0 1.8 2.5 111 chrX 17234259 intron f + chrX 17234314 intron f + chrX 17234370 intron f + chrX_7_17230001 chrX_17230001 RAL-812 1741 chrX 17303904 17303937 chrX 17303990 17304023 7 85 0.5 1.5 1.0 3.5 119 chrX 17303904 intron CG5445 + chrX 17303964 intron CG5445 + chrX 17304023 intron CG5445 + chrX_7_17300001 chrX_17300001 RAL-812 1742 chrX 17389738 17389764 chrX 17389825 17389830 5 83 3.5 0.5 2.0 1.7 92 chrX 17389738 intergenic not near genes chrX 17389784 intergenic not near genes chrX 17389830 intergenic not near genes chrX_5_17385001 chrX_17385001 RAL-812 1743 chrX 17545008 17545030 chrX 17545090 17545112 4 82 2.0 2.5 2.2 1.2 104 chrX 17545008 intron CG43658 - chrX 17545060 intron CG43658 - chrX 17545112 intron CG43658 - chrX_4_17545001 chrX_17545001 RAL-812 1744 chrX 17680898 17680918 chrX 17680975 17680995 4 77 2.5 6.5 4.5 0.7 97 chrX 17680898 intron chas - chrX 17680946 intron chas - chrX 17680995 intron chas - chrX_4_17680001 chrX_17680001 RAL-812 1745 chrX 17731117 17731132 chrX 17731193 17731208 4 76 3.5 2.0 2.8 1.1 91 chrX 17731117 intron CG42684 + chrX 17731162 intron CG42684 + chrX 17731208 intron CG42684 + chrX_4_17730001 chrX_17730001 RAL-812 1746 chrX 18194064 18194097 chrX 18194599 18194631 BS 7 535 1.0 1.0 1.0 3.5 567 chrX 18194064 intron Frq2 + chrX 18194348 intron Frq2 + chrX 18194631 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-812 1747 chrX 18427381 18427401 chrX 18427792 18427812 9 411 6.0 0.5 3.2 2.1 431 chrX 18427381 intergenic CG42323 + chrX 18427596 intergenic not near genes chrX 18427812 intergenic not near genes chrX_9_18425001 chrX_18425001 RAL-812 1748 chrX 18558777 18558799 chrX 18558859 18558881 9 81 0.0 2.0 1.0 4.5 104 chrX 18558777 intron Bx + chrX 18558829 intron Bx + chrX 18558881 intron Bx + chrX_9_18555001 chrX_18555001 RAL-812 1749 chrX 18645021 18645046 chrX 18645119 18645144 6 98 1.0 3.0 2.0 2.0 123 chrX 18645021 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645144 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-812 1750 chrX 18912215 18912251 chrX 18912700 18912736 8 482 2.0 2.0 2.0 2.7 521 chrX 18912215 intergenic CR44708 +,CG7378 + chrX 18912476 5` UTR CR44708 + chrX 18912736 5` UTR CR44708 + chrX_8_18910001 chrX_18910001 RAL-812 1751 chrX 18947504 18947534 chrX 18947593 18947627 7 92 3.5 2.0 2.8 1.8 123 chrX 18947504 intron CG43759 + chrX 18947566 intron CG43759 + chrX 18947627 intron CG43759 + chrX_7_18945001 chrX_18945001 RAL-812 1752 chrX 19060410 19060432 chrX 19065194 19065216 Doc 4 4784 3.5 3.0 3.2 1.0 4806 chrX 19060410 intron CG14190 + chrX 19062813 intron CG14190 + chrX 19065216 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-812 1753 chrX 13057299 13057299 chrX 19242813 19242813 5 6185514 2.0 5.0 3.5 1.1 6185514 chrX 13057299 intron rad + chrX 16150056 intergenic not near genes chrX 19242813 intergenic not near genes chrX_5_16150001 chrX_16150001 RAL-812 1754 chrX 19281004 19281015 chrX 19281133 19281144 4 128 0.0 2.0 1.0 2.0 140 chrX 19281004 intergenic CG8034 - chrX 19281074 intergenic CG8034 - chrX 19281144 intergenic CG8034 - chrX_4_19280001 chrX_19280001 RAL-812 1755 chrX 19380167 19380188 chrX 19380408 19380429 pogo 7 241 2.5 1.0 1.8 2.5 262 chrX 19380167 intron kek5 + chrX 19380298 intron kek5 + chrX 19380429 intron kek5 + chrX_7_19380001 chrX_19380001 RAL-812 1756 chrX 19404628 19404640 chrX 19404726 19404738 4 98 0.5 1.5 1.0 2.0 110 chrX 19404628 intron kek5 + chrX 19404683 intron kek5 + chrX 19404738 intron kek5 + chrX_4_19400001 chrX_19400001 RAL-812 1757 chrX 19472127 19472145 chrX 19472697 19472711 jockey 8 569 4.0 2.5 3.2 1.9 584 chrX 19472127 intergenic kek5 + chrX 19472419 intergenic not near genes chrX 19472711 intergenic not near genes chrX_8_19470001 chrX_19470001 RAL-812 1758 chrX 19662031 19662053 chrX 19662254 19662276 5 223 1.0 3.5 2.2 1.6 245 chrX 19662031 intron CG14223 - chrX 19662154 intron CG14223 - chrX 19662276 intron CG14223 - chrX_5_19660001 chrX_19660001 RAL-812 1759 chrX 19710078 19710103 chrX 19711864 19711889 S-element 6 1786 3.5 6.0 4.8 1.0 1811 chrX 19710078 intron meso18E - chrX 19710984 intron meso18E - chrX 19711889 intron meso18E - chrX_6_19710001 chrX_19710001 RAL-812 1760 chrX 19983431 19983534 chrX 19983516 19983693 4 140 0.0 0.0 0.0 4.0 262 chrX 19983431 intergenic not near genes chrX 19983562 intergenic not near genes chrX 19983693 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-812 1761 chrX 20041530 20041564 chrX 20041610 20041644 11 80 0.5 0.0 0.2 9.2 114 chrX 20041530 intron Dop2R - chrX 20041587 intron Dop2R - chrX 20041644 intron Dop2R - chrX_11_20040001 chrX_20040001 RAL-812 1762 chrX 20047802 20047825 chrX 20048029 20048052 6 226 2.0 1.5 1.8 2.1 250 chrX 20047802 intron Dop2R - chrX 20047927 intron Dop2R - chrX 20048052 intron Dop2R - chrX_6_20045001 chrX_20045001 RAL-812 1763 chrX 20105211 20105229 chrX 20105318 20105334 6 107 22.5 26.0 24.2 0.2 123 chrX 20105211 intergenic not near genes chrX 20105272 intergenic not near genes chrX 20105334 intergenic not near genes chrX_6_20105001 chrX_20105001 RAL-812 1764 chrX 20124087 20124105 chrX 20124226 20124244 4 139 1.0 0.0 0.5 2.7 157 chrX 20124087 intron CG34331 + chrX 20124166 intron CG34331 + chrX 20124244 intron CG34331 + chrX_4_20120001 chrX_20120001 RAL-812 1765 chrX 20312888 20312909 chrX 20312966 20312987 4 78 2.0 3.5 2.8 1.1 99 chrX 20312888 intron CG1504 - chrX 20312938 intron CG1504 - chrX 20312987 intron CG1504 - chrX_4_20310001 chrX_20310001 RAL-812 1766 chrX 20377325 20377349 chrX 20378791 20378816 hobo 7 1466 3.5 4.5 4.0 1.4 1491 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378816 intergenic not near genes chrX_7_20375001 chrX_20375001 RAL-812 1767 chrX 20443177 20443192 chrX 20443253 20443268 6 76 6.0 1.5 3.8 1.2 91 chrX 20443177 exon CG1695 + chrX 20443222 intron CG1695 + chrX 20443268 intron CG1695 + chrX_6_20440001 chrX_20440001 RAL-812 1768 chrX 20570778 20570801 chrX 20570862 20570886 5 85 0.5 1.5 1.0 2.5 108 chrX 20570778 intergenic not near genes chrX 20570832 intergenic not near genes chrX 20570886 intergenic not near genes chrX_5_20570001 chrX_20570001 RAL-812 1769 chrX 20648016 20648043 chrX 20648161 20648179 5 143 1.0 2.0 1.5 2.0 163 chrX 20648016 intergenic not near genes chrX 20648098 intergenic not near genes chrX 20648179 intergenic not near genes chrX_5_20645001 chrX_20645001 RAL-812 1770 chrX 20836731 20836757 chrX 20844333 20844359 roo 8 7602 1.5 0.5 1.0 4.0 7628 chrX 20836731 intron shakB - chrX 20840545 intron shakB - chrX 20844359 intron shakB - chrX_8_20840001 chrX_20840001 RAL-812 1771 chrX 20940721 20940744 chrX 20942190 20942213 hobo 9 1468 7.5 4.5 6.0 1.3 1492 chrX 20940721 intergenic not near genes chrX 20941467 intergenic not near genes chrX 20942213 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-812 1772 chrX 21042556 21042584 chrX 21045342 21045371 16 2786 31.5 20.5 26.0 0.6 2815 chrX 21042556 exon Mgstl + chrX 21043964 exon,3` UTR Mgstl +,CR44431 - chrX 21045371 intron Cbs + chrX_16_21040001 chrX_21040001 RAL-812 1773 chrX 21083454 21083475 chrX 21083547 21083568 7 93 2.0 0.5 1.2 3.2 114 chrX 21083454 intergenic not near genes chrX 21083511 intergenic not near genes chrX 21083568 intergenic not near genes chrX_7_21080001 chrX_21080001 RAL-812 1774 chrX 21084390 21084405 chrX 21084488 21084501 8 98 0.0 0.0 0.0 8.0 111 chrX 21084390 intergenic not near genes chrX 21084446 intergenic not near genes chrX 21084501 intergenic not near genes chrX_8_21080001 chrX_21080001 RAL-812 1775 chrX 21197061 21197085 chrX 21197134 21197158 7 72 2.0 3.0 2.5 2.0 97 chrX 21197061 intergenic not near genes chrX 21197110 intergenic not near genes chrX 21197158 intergenic not near genes chrX_7_21195001 chrX_21195001 RAL-812 1776 chrX 21358075 21358095 chrX 21358155 21358175 4 80 2.0 2.5 2.2 1.2 100 chrX 21358075 intergenic sol +,Sep1 + chrX 21358125 intergenic Sep1 +,sol + chrX 21358175 intergenic Sep1 +,sol + chrX_4_21355001 chrX_21355001 RAL-812 1777 chrX 21428337 21428361 chrX 21428527 21428551 4 190 3.0 1.0 2.0 1.3 214 chrX 21428337 intron CG42343 - chrX 21428444 intron CG42343 - chrX 21428551 intron CG42343 - chrX_4_21425001 chrX_21425001 RAL-812 1778 chrX 21458699 21458730 chrX 21464135 21464166 Ivk 4 5436 0.5 3.5 2.0 1.3 5467 chrX 21458699 intergenic not near genes chrX 21461432 intergenic not near genes chrX 21464166 intergenic not near genes chrX_4_21460001 chrX_21460001 RAL-812 1779 chrX 21500567 21500588 chrX 21500768 21500784 6 200 0.0 1.0 0.5 4.0 217 chrX 21500567 intron CR45082 - chrX 21500676 intron CR45082 - chrX 21500784 intron CR45082 - chrX_6_21500001 chrX_21500001 RAL-812 1780 chrX 21516991 21517021 chrX 21517064 21517098 6 73 2.5 3.5 3.0 1.5 107 chrX 21516991 intron CR45082 - chrX 21517044 intron CR45082 - chrX 21517098 intron CR45082 - chrX_6_21515001 chrX_21515001 RAL-812 1781 chrX 21565415 21565445 chrX 21565493 21565523 6 78 0.5 1.0 0.8 3.3 108 chrX 21565415 intergenic not near genes chrX 21565469 intergenic not near genes chrX 21565523 intergenic not near genes chrX_6_21565001 chrX_21565001 RAL-812 1782 chrX 21624921 21624943 chrX 21625010 21625012 4 83 0.0 3.5 1.8 1.4 91 chrX 21624921 3` UTR DIP1 - chrX 21624966 3` UTR DIP1 - chrX 21625012 3` UTR DIP1 - chrX_4_21620001 chrX_21620001 RAL-812 1783 chrX 22506979 22507011 chrX 22507064 22507096 11 85 4.0 2.0 3.0 2.8 117 chrX 22506979 intron l(1)G0196 + chrX 22507038 intron l(1)G0196 + chrX 22507096 intron l(1)G0196 + chrX_11_22505001 chrX_22505001 RAL-812 1784 chrX 22522626 22522646 chrX 22525446 22525466 NOF 4 2820 1.5 1.0 1.2 1.8 2840 chrX 22522626 intron CG17600 + chrX 22524046 intron CG17600 + chrX 22525466 intron CG17600 + chrX_4_22520001 chrX_22520001 RAL-812 1785 chrX 22638627 22638637 chrX 22639415 22639425 4 788 1.5 0.5 1.0 2.0 798 chrX 22638627 intergenic not near genes chrX 22639026 intergenic not near genes chrX 22639425 intergenic not near genes chrX_4_22635001 chrX_22635001 RAL-812 1786 chrX 22660570 22660591 chrX 22660653 22660675 8 82 2.5 3.0 2.8 2.1 105 chrX 22660570 intron CR44997 + chrX 22660622 intron CR44997 + chrX 22660675 intron CR44997 + chrX_8_22660001 chrX_22660001 RAL-812 1787 chrX 22663908 22663927 chrX 22664000 22664018 5 92 0.0 4.0 2.0 1.7 110 chrX 22663908 intron CR44997 + chrX 22663963 intron CR44997 + chrX 22664018 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-812 1788 chrX 22697509 22697520 chrX 22701806 22701817 Juan 5 4297 4.0 2.0 3.0 1.2 4308 chrX 22697509 intron CR44997 + chrX 22699663 intron CR44997 + chrX 22701817 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-812 1789 chrX 22870877 22870897 chrX 22870967 22870988 6 88 2.5 5.0 3.8 1.2 111 chrX 22870877 intron,3` UTR CG42346 +,CR43656 - chrX 22870932 intron,3` UTR CG42346 +,CR43656 - chrX 22870988 intron,3` UTR CG42346 +,CR43656 - chrX_6_22870001 chrX_22870001 RAL-812 1790 chrX 22922514 22922550 chrX 22922594 22922625 5 78 1.0 2.0 1.5 2.0 111 chrX 22922514 intergenic not near genes chrX 22922570 intergenic not near genes chrX 22922625 intergenic not near genes chrX_5_22920001 chrX_22920001 RAL-812 1791 chrX 22992394 22992429 chrX 22992525 22992559 11 131 2.0 1.5 1.8 3.9 165 chrX 22992394 intron,intron stnA -,stnB - chrX 22992476 intron,intron stnA -,stnB - chrX 22992559 intron,intron stnA -,stnB - chrX_11_22990001 chrX_22990001 RAL-812 1792 chrY 975603 975875 chrY 975706 975825 6 83 166.5 129.0 147.8 0.0 222 chrY 975603 intergenic not near genes chrY 975714 intergenic not near genes chrY 975825 intergenic not near genes chrY_6_975001 chrY_975001 RAL-812