SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47458	47485	chr2L	52563	52588	jockey	10	5105	2.5	4.5	3.5	2.2	5130	chr2L	47458	intron	Cda5 -	chr2L	50023	intron	Cda5 -	chr2L	52588	intron	Cda5 -	chr2L_10_50001	chr2L_50001	RAL-810
3	chr2L	347884	347919	chr2L	355384	355419	blood	10	7500	2.0	1.5	1.8	3.6	7535	chr2L	347884	3` UTR	Plc21C +	chr2L	351652	intron	Plc21C +	chr2L	355419	3` UTR	Plc21C +	chr2L_10_350001	chr2L_350001	RAL-810
7	chr2L	686917	686950	chr2L	695957	695983	roo	8	9039	2.5	3.0	2.8	2.1	9066	chr2L	686917	intron	ds -	chr2L	691450	intron	ds -	chr2L	695983	intron	ds -	chr2L_8_690001	chr2L_690001	RAL-810
9	chr2L	770472	770478	chr2L	772253	772259	Bari1	4	1780	3.0	4.5	3.8	0.8	1787	chr2L	770472	intergenic	not near genes	chr2L	771366	intergenic	not near genes	chr2L	772259	intergenic	CR44614 +	chr2L_4_770001	chr2L_770001	RAL-810
10	chr2L	770480	770485	chr2L	772250	772264	Bari1	4	1778	1.0	3.5	2.2	1.2	1784	chr2L	770480	intergenic	not near genes	chr2L	771372	intergenic	not near genes	chr2L	772264	intergenic	CR44614 +	chr2L_4_770001	chr2L_770001	RAL-810
19	chr2L	1220130	1220161	chr2L	1227596	1227627	blood	9	7465	2.5	0.5	1.5	3.6	7497	chr2L	1220130	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227627	intron	CG42329 +	chr2L_9_1220001	chr2L_1220001	RAL-810
22	chr2L	1301755	1301783	chr2L	1302292	1302322	gypsy	13	539	4.5	4.0	4.2	2.5	567	chr2L	1301755	intergenic	not near genes	chr2L	1302038	intergenic	not near genes	chr2L	1302322	intergenic	not near genes	chr2L_13_1300001	chr2L_1300001	RAL-810
23	chr2L	1570686	1570719	chr2L	1573558	1573591	F-element	9	2872	3.0	2.5	2.8	2.4	2905	chr2L	1570686	intron	haf +	chr2L	1572138	intron	haf +	chr2L	1573591	intron	haf +	chr2L_9_1570001	chr2L_1570001	RAL-810
26	chr2L	1678980	1678994	chr2L	1686445	1686459	blood	5	7465	2.5	3.5	3.0	1.2	7479	chr2L	1678980	intron	chinmo +	chr2L	1682720	intron	chinmo +	chr2L	1686459	intron	chinmo +	chr2L_5_1680001	chr2L_1680001	RAL-810
27	chr2L	1678995	1679009	chr2L	1686440	1686474	blood	6	7461	1.0	1.5	1.2	2.7	7479	chr2L	1678995	intron	chinmo +	chr2L	1682734	intron	chinmo +	chr2L	1686474	intron	chinmo +	chr2L_6_1680001	chr2L_1680001	RAL-810
35	chr2L	2100382	2100405	chr2L	2109533	2109546	roo	6	9149	4.0	3.5	3.8	1.2	9164	chr2L	2100382	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109546	intron	dpr3 -	chr2L_6_2100001	chr2L_2100001	RAL-810
46	chr2L	2661201	2661236	chr2L	2663034	2663052	I-element	5	1830	2.0	0.5	1.2	2.3	1851	chr2L	2661201	intergenic	not near genes	chr2L	2662126	intergenic	not near genes	chr2L	2663052	intergenic	not near genes	chr2L_5_2660001	chr2L_2660001	RAL-810
58	chr2L	3388599	3388630	chr2L	3388840	3388871	pogo	6	241	5.0	1.0	3.0	1.5	272	chr2L	3388599	intergenic	CG42460 -	chr2L	3388735	intergenic	CG42460 -	chr2L	3388871	intergenic	CG42460 -,CR44791 +	chr2L_6_3385001	chr2L_3385001	RAL-810
65	chr2L	3649788	3649805	chr2L	3654990	3655007	copia	7	5202	0.5	5.0	2.8	1.8	5219	chr2L	3649788	intron	for -	chr2L	3652398	intron	for -	chr2L	3655007	intron	for -	chr2L_7_3650001	chr2L_3650001	RAL-810
72	chr2L	4066047	4066059	chr2L	4068872	4068884	Juan	5	2825	2.5	3.0	2.8	1.3	2837	chr2L	4066047	intron	ed +	chr2L	4067466	intron	ed +	chr2L	4068884	intron	ed +	chr2L_5_4065001	chr2L_4065001	RAL-810
81	chr2L	4601708	4601736	chr2L	4609149	4609177	mdg1	4	7441	3.0	2.0	2.5	1.1	7469	chr2L	4601708	intron	dp -	chr2L	4605442	intron	dp -	chr2L	4609177	intron	dp -	chr2L_4_4605001	chr2L_4605001	RAL-810
85	chr2L	4918166	4918178	chr2L	4923239	4923251	jockey	7	5073	5.5	0.0	2.8	1.8	5085	chr2L	4918166	intron	hoe1 -	chr2L	4920708	intron	hoe1 -	chr2L	4923251	intron	hoe1 -	chr2L_7_4920001	chr2L_4920001	RAL-810
87	chr2L	4953512	4953541	chr2L	4953753	4953762	pogo	10	239	2.0	0.0	1.0	5.0	250	chr2L	4953512	intergenic	Jon25Bii -	chr2L	4953637	intergenic	not near genes	chr2L	4953762	intergenic	not near genes	chr2L_10_4950001	chr2L_4950001	RAL-810
90	chr2L	5342772	5342801	chr2L	5345152	5345181	Doc	7	2380	4.5	3.5	4.0	1.4	2409	chr2L	5342772	intergenic	not near genes	chr2L	5343976	intergenic	not near genes	chr2L	5345181	intergenic	not near genes	chr2L_7_5340001	chr2L_5340001	RAL-810
100	chr2L	5827711	5827736	chr2L	5836719	5836744	roo	9	9006	2.5	2.5	2.5	2.6	9033	chr2L	5827711	intron	TrissinR +	chr2L	5832228	intron	TrissinR +	chr2L	5836744	intron	TrissinR +	chr2L_9_5830001	chr2L_5830001	RAL-810
112	chr2L	6363149	6363180	chr2L	6366071	6366101	Burdock	7	2922	1.5	2.0	1.8	2.5	2952	chr2L	6363149	intergenic	not near genes	chr2L	6364625	intergenic	not near genes	chr2L	6366101	intergenic	not near genes	chr2L_7_6360001	chr2L_6360001	RAL-810
113	chr2L	6426860	6426882	chr2L	6445120	6445141	roo	10	18260	4.5	6.0	5.2	1.6	18281	chr2L	6426860	3` UTR	CG9527 -	chr2L	6436000	intron	CG9527 -	chr2L	6445141	exon	CG9527 -	chr2L_10_6435001	chr2L_6435001	RAL-810
120	chr2L	6991391	6991427	chr2L	6998555	6998589	HMS-Beagle	9	7163	1.0	1.0	1.0	4.5	7198	chr2L	6991391	intron	uif -	chr2L	6994990	intron	uif -	chr2L	6998589	intron	uif -	chr2L_9_6990001	chr2L_6990001	RAL-810
137	chr2L	7959044	7959060	chr2L	7960455	7960471	pogo	5	1411	2.0	0.0	1.0	2.5	1427	chr2L	7959044	intron	Snoo -	chr2L	7959758	intron	Snoo -	chr2L	7960471	intron	Snoo -	chr2L_5_7955001	chr2L_7955001	RAL-810
138	chr2L	7977102	7977112	chr2L	7984078	7984088	297	5	6974	2.0	3.5	2.8	1.3	6986	chr2L	7977102	intron	Snoo -	chr2L	7980595	intron	Snoo -	chr2L	7984088	intron,5` UTR	Snoo -,CG7231 +	chr2L_5_7980001	chr2L_7980001	RAL-810
139	chr2L	8013616	8013633	chr2L	8018821	8018838	copia	6	5204	0.5	0.0	0.2	5.0	5222	chr2L	8013616	intron	Tg +	chr2L	8016227	intron	Tg +	chr2L	8018838	intron	Tg +	chr2L_6_8015001	chr2L_8015001	RAL-810
140	chr2L	8018819	8018834	chr2L	8023603	8023618	Doc	4	4784	0.0	3.5	1.8	1.4	4799	chr2L	8018819	intron	Tg +	chr2L	8021218	intron	Tg +	chr2L	8023618	intron	Tg +	chr2L_4_8020001	chr2L_8020001	RAL-810
149	chr2L	8452420	8452451	chr2L	8461591	8461622	roo	9	9171	2.0	7.5	4.8	1.6	9202	chr2L	8452420	intron	fu12 -	chr2L	8457021	intron	fu12 -	chr2L	8461622	intron	fu12 -	chr2L_9_8455001	chr2L_8455001	RAL-810
153	chr2L	8594465	8594487	chr2L	8601519	8601541	297	5	7054	4.0	3.5	3.8	1.0	7076	chr2L	8594465	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598003	intron	Sema-1a +	chr2L	8601541	intron	Sema-1a +	chr2L_5_8595001	chr2L_8595001	RAL-810
156	chr2L	8723119	8723147	chr2L	8731496	8731524	Tirant	7	8377	1.5	2.0	1.8	2.5	8405	chr2L	8723119	intron	raw -	chr2L	8727322	intron	raw -	chr2L	8731524	intron	raw -	chr2L_7_8725001	chr2L_8725001	RAL-810
164	chr2L	9000284	9000310	chr2L	9007792	9007820	roo	13	7509	5.0	3.5	4.2	2.5	7536	chr2L	9000284	intergenic	Try29F +	chr2L	9004052	intergenic	not near genes	chr2L	9007820	intergenic	not near genes	chr2L_13_9000001	chr2L_9000001	RAL-810
170	chr2L	9393496	9393521	chr2L	9396463	9396488	jockey	8	2967	3.5	2.5	3.0	2.0	2992	chr2L	9393496	intron	Shawl -	chr2L	9394992	intron	Shawl -	chr2L	9396488	intron	Shawl -	chr2L_8_9390001	chr2L_9390001	RAL-810
184	chr2L	9973726	9973756	chr2L	9980845	9980875	HMS-Beagle	4	7119	2.0	3.5	2.8	1.1	7149	chr2L	9973726	intergenic	not near genes	chr2L	9977300	intergenic	not near genes	chr2L	9980875	intergenic	not near genes	chr2L_4_9975001	chr2L_9975001	RAL-810
188	chr2L	10156322	10156353	chr2L	10163792	10163821	blood	8	7469	3.0	5.0	4.0	1.6	7499	chr2L	10156322	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160072	intron	CG44153 -	chr2L	10163821	intron	CG44153 -	chr2L_8_10160001	chr2L_10160001	RAL-810
196	chr2L	10592842	10592874	chr2L	10600504	10600536	opus	9	7662	2.5	1.5	2.0	3.0	7694	chr2L	10592842	intron	Trim9 +	chr2L	10596689	intron	Trim9 +	chr2L	10600536	intron	Trim9 +	chr2L_9_10595001	chr2L_10595001	RAL-810
203	chr2L	10946949	10946973	chr2L	10956161	10956188	roo	7	9214	1.5	2.0	1.8	2.5	9239	chr2L	10946949	intron	dpr2 -	chr2L	10951568	intron	dpr2 -	chr2L	10956188	intron	dpr2 -	chr2L_7_10950001	chr2L_10950001	RAL-810
211	chr2L	11563636	11563656	chr2L	11568840	11568860	copia	4	5203	3.0	3.0	3.0	1.0	5224	chr2L	11563636	intergenic	not near genes	chr2L	11566248	intergenic	not near genes	chr2L	11568860	intergenic	not near genes	chr2L_4_11565001	chr2L_11565001	RAL-810
212	chr2L	11563658	11563668	chr2L	11568838	11568872	copia	5	5199	2.0	3.0	2.5	1.4	5214	chr2L	11563658	intergenic	not near genes	chr2L	11566265	intergenic	not near genes	chr2L	11568872	intergenic	not near genes	chr2L_5_11565001	chr2L_11565001	RAL-810
213	chr2L	11713510	11713540	chr2L	11720978	11721008	blood	8	7468	2.0	3.0	2.5	2.3	7498	chr2L	11713510	intergenic	not near genes	chr2L	11717259	intergenic	not near genes	chr2L	11721008	intergenic	CR44143 +	chr2L_8_11715001	chr2L_11715001	RAL-810
221	chr2L	12067328	12067363	chr2L	12074380	12074415	297	13	7052	2.5	1.5	2.0	4.3	7087	chr2L	12067328	intergenic	not near genes	chr2L	12070872	intergenic	not near genes	chr2L	12074415	intergenic	not near genes	chr2L_13_12070001	chr2L_12070001	RAL-810
227	chr2L	12731057	12731090	chr2L	12735824	12735857	F-element	11	4767	3.5	4.0	3.8	2.3	4800	chr2L	12731057	intron	MRP +	chr2L	12733457	intron	MRP +	chr2L	12735857	intron	MRP +	chr2L_11_12730001	chr2L_12730001	RAL-810
229	chr2L	12739174	12739207	chr2L	12743955	12743966	Doc	7	4778	1.0	4.0	2.5	2.0	4792	chr2L	12739174	exon	MRP +	chr2L	12741570	intron	MRP +	chr2L	12743966	intron	MRP +	chr2L_7_12740001	chr2L_12740001	RAL-810
230	chr2L	12791624	12791633	chr2L	12795277	12795291	F-element	10	3663	3.5	3.0	3.2	2.4	3667	chr2L	12791624	intergenic	not near genes	chr2L	12793458	intergenic	not near genes	chr2L	12795291	intergenic	not near genes	chr2L_10_12790001	chr2L_12790001	RAL-810
233	chr2L	12861698	12861728	chr2L	12863162	12863195	hobo	5	1466	1.0	1.0	1.0	2.5	1497	chr2L	12861698	intergenic	not near genes	chr2L	12862446	intergenic	not near genes	chr2L	12863195	intergenic	not near genes	chr2L_5_12860001	chr2L_12860001	RAL-810
236	chr2L	12933848	12933883	chr2L	12941315	12941350	blood	8	7464	3.5	3.0	3.2	1.9	7502	chr2L	12933848	intergenic	not near genes	chr2L	12937599	intergenic	not near genes	chr2L	12941350	intergenic	not near genes	chr2L_8_12935001	chr2L_12935001	RAL-810
238	chr2L	13036241	13036273	chr2L	13036483	13036515	X-element	9	242	6.5	0.0	3.2	2.1	274	chr2L	13036241	intron	CG9932 -	chr2L	13036378	intron	CG9932 -	chr2L	13036515	intron	CG9932 -	chr2L_9_13035001	chr2L_13035001	RAL-810
243	chr2L	13241958	13241970	chr2L	13244342	13244354	BS	6	2384	1.5	0.0	0.8	3.3	2396	chr2L	13241958	5` UTR	CR45330 +	chr2L	13243156	intron	CR45330 +	chr2L	13244354	5` UTR	CR45330 +	chr2L_6_13240001	chr2L_13240001	RAL-810
245	chr2L	13405650	13405680	chr2L	13410445	13410477	Doc	11	4796	1.5	3.0	2.2	3.4	4827	chr2L	13405650	exon	CG7110 +	chr2L	13408064	intron	CG7110 +	chr2L	13410477	intron	CG7110 +	chr2L_11_13405001	chr2L_13405001	RAL-810
248	chr2L	13449467	13449496	chr2L	13456903	13456932	Quasimodo	11	7436	2.5	5.0	3.8	2.3	7465	chr2L	13449467	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453200	intron	CG42784 +	chr2L	13456932	intron	CG42784 +	chr2L_11_13450001	chr2L_13450001	RAL-810
249	chr2L	13481451	13481456	chr2L	13482058	13482063	jockey	4	607	3.0	5.0	4.0	0.8	612	chr2L	13481451	intron	CG42784 +	chr2L	13481757	intron	CG42784 +	chr2L	13482063	intron	CG42784 +	chr2L_4_13480001	chr2L_13480001	RAL-810
250	chr2L	13481461	13481474	chr2L	13482056	13482081	jockey	8	605	1.0	5.0	3.0	2.0	620	chr2L	13481461	intron	CG42784 +	chr2L	13481771	intron	CG42784 +	chr2L	13482081	intron	CG42784 +	chr2L_8_13480001	chr2L_13480001	RAL-810
254	chr2L	13761798	13761834	chr2L	13762908	13762945	Doc	12	1110	4.5	2.0	3.2	2.9	1147	chr2L	13761798	intron	TM9SF4 +	chr2L	13762372	intron	TM9SF4 +	chr2L	13762945	intron	TM9SF4 +	chr2L_12_13760001	chr2L_13760001	RAL-810
259	chr2L	13853086	13853116	chr2L	13862236	13862266	roo	5	9150	3.5	3.5	3.5	1.1	9180	chr2L	13853086	intron	CenG1A +	chr2L	13857676	intron	CenG1A +	chr2L	13862266	intron	CenG1A +	chr2L_5_13855001	chr2L_13855001	RAL-810
289	chr2L	15446051	15446068	chr2L	15453520	15453537	blood	5	7468	4.0	3.0	3.5	1.1	7486	chr2L	15446051	intergenic	not near genes	chr2L	15449794	intergenic	not near genes	chr2L	15453537	intergenic	not near genes	chr2L_5_15445001	chr2L_15445001	RAL-810
292	chr2L	15586409	15586436	chr2L	15593461	15593486	297	14	7052	4.5	2.5	3.5	3.1	7077	chr2L	15586409	intergenic	not near genes	chr2L	15589948	intergenic	not near genes	chr2L	15593486	intergenic	not near genes	chr2L_14_15585001	chr2L_15585001	RAL-810
298	chr2L	15956024	15956049	chr2L	15957491	15957516	hobo	7	1466	4.0	2.0	3.0	1.8	1492	chr2L	15956024	intron	beat-Ib -	chr2L	15956770	intron	beat-Ib -	chr2L	15957516	intron	beat-Ib -	chr2L_7_15955001	chr2L_15955001	RAL-810
303	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	8	145889	11.0	10.0	10.5	0.7	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_8_16140001	chr2L_16140001	RAL-810
304	chr2L	16141160	16141196	chr2L	16146367	16146403	copia	9	5207	2.0	1.5	1.8	3.2	5243	chr2L	16141160	intergenic	not near genes	chr2L	16143782	intergenic	not near genes	chr2L	16146403	intergenic	not near genes	chr2L_9_16140001	chr2L_16140001	RAL-810
305	chr2L	16153750	16153759	chr2L	16160817	16160827	297	5	7068	2.0	2.5	2.2	1.6	7077	chr2L	16153750	intergenic	not near genes	chr2L	16157288	intergenic	not near genes	chr2L	16160827	intergenic	not near genes	chr2L_5_16155001	chr2L_16155001	RAL-810
308	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	10	145889	11.0	10.0	10.5	0.9	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-810
310	chr2L	16280255	16280279	chr2L	16281426	16281450	1360	4	1171	3.0	3.5	3.2	1.0	1195	chr2L	16280255	intron	crp -	chr2L	16280852	intron	crp -	chr2L	16281450	intron	crp -	chr2L_4_16280001	chr2L_16280001	RAL-810
313	chr2L	16511985	16511993	chr2L	16519112	16519120	HMS-Beagle	5	7127	3.5	1.5	2.5	1.4	7135	chr2L	16511985	intron	CG5953 -	chr2L	16515552	intron	CG5953 -	chr2L	16519120	intron	CG5953 -	chr2L_5_16515001	chr2L_16515001	RAL-810
317	chr2L	16852246	16852265	chr2L	16858059	16858078	Doc3-element	6	5813	24.5	6.0	15.2	0.4	5832	chr2L	16852246	exon	CG31810 -	chr2L	16855162	intron	CG31809 -	chr2L	16858078	intron	CG31809 -	chr2L_6_16855001	chr2L_16855001	RAL-810
319	chr2L	16958108	16958130	chr2L	16962896	16962918	Doc	10	4788	3.5	2.0	2.8	2.6	4810	chr2L	16958108	intergenic	not near genes	chr2L	16960513	intergenic	not near genes	chr2L	16962918	intergenic	not near genes	chr2L_10_16960001	chr2L_16960001	RAL-810
327	chr2L	17199167	17199188	chr2L	17200634	17200655	hobo	4	1467	1.0	5.0	3.0	1.0	1488	chr2L	17199167	intron	beat-IIIc -	chr2L	17199911	intron	beat-IIIc -	chr2L	17200655	intron	beat-IIIc -	chr2L_4_17195001	chr2L_17195001	RAL-810
329	chr2L	17273202	17273222	chr2L	17277985	17278005	F-element	5	4783	2.0	1.5	1.8	1.8	4803	chr2L	17273202	intergenic	not near genes	chr2L	17275604	intergenic	not near genes	chr2L	17278005	intergenic	not near genes	chr2L_5_17275001	chr2L_17275001	RAL-810
334	chr2L	17432016	17432036	chr2L	17432123	17432143	1360	6	107	0.0	2.0	1.0	3.0	127	chr2L	17432016	intron	Dif -	chr2L	17432080	intron	Dif -	chr2L	17432143	intron	Dif -	chr2L_6_17430001	chr2L_17430001	RAL-810
336	chr2L	17819922	17819952	chr2L	17825125	17825150	copia	11	5202	2.0	0.0	1.0	5.5	5228	chr2L	17819922	intron	CadN2 -	chr2L	17822536	intron	CadN2 -	chr2L	17825150	intron	CadN2 -	chr2L_11_17820001	chr2L_17820001	RAL-810
339	chr2L	17911962	17911986	chr2L	17914137	17914164	pogo	6	2178	3.0	1.0	2.0	2.0	2202	chr2L	17911962	intergenic	not near genes	chr2L	17913063	intergenic	not near genes	chr2L	17914164	intergenic	CG43271 -	chr2L_6_17910001	chr2L_17910001	RAL-810
340	chr2L	17951945	17951980	chr2L	17953412	17953447	hobo	12	1467	4.5	2.0	3.2	2.9	1502	chr2L	17951945	intergenic	CR44398 -,CR44397 -	chr2L	17952696	intergenic	not near genes	chr2L	17953447	intergenic	not near genes	chr2L_12_17950001	chr2L_17950001	RAL-810
349	chr2L	18408023	18408050	chr2L	18412807	18412834	Doc	9	4784	4.5	0.0	2.2	2.8	4811	chr2L	18408023	intergenic	not near genes	chr2L	18410428	intergenic	not near genes	chr2L	18412834	intergenic	not near genes	chr2L_9_18410001	chr2L_18410001	RAL-810
366	chr2L	19345026	19345042	chr2L	19357235	19357251	blood	5	12209	3.5	6.0	4.8	0.9	12225	chr2L	19345026	intron	dnt -	chr2L	19351138	intron	dnt -	chr2L	19357251	intron	dnt -	chr2L_5_19350001	chr2L_19350001	RAL-810
378	chr2L	19652572	19652602	chr2L	19674005	19674038	opus	10	21436	2.0	2.0	2.0	3.3	21466	chr2L	19652572	intron	Lar +	chr2L	19663305	intron	Lar +	chr2L	19674038	intron	Lar +	chr2L_10_19660001	chr2L_19660001	RAL-810
379	chr2L	19703537	19703569	chr2L	19712673	19712705	roo	8	9136	3.5	1.0	2.2	2.5	9168	chr2L	19703537	intron	Lar +	chr2L	19708121	intron	Lar +	chr2L	19712705	intron	Lar +	chr2L_8_19705001	chr2L_19705001	RAL-810
380	chr2L	19737361	19737376	chr2L	19740830	19740844	1360	8	3467	5.0	3.5	4.2	1.5	3483	chr2L	19737361	intergenic	Nf-YB +	chr2L	19739102	intergenic	not near genes	chr2L	19740844	intergenic	not near genes	chr2L_8_19735001	chr2L_19735001	RAL-810
381	chr2L	19762813	19762839	chr2L	19763055	19763081	pogo	7	242	1.5	4.0	2.8	1.8	268	chr2L	19762813	5` UTR	fbp -	chr2L	19762947	intron	fbp -	chr2L	19763081	intron	fbp -	chr2L_7_19760001	chr2L_19760001	RAL-810
387	chr2L	20005871	20005904	chr2L	20010946	20010980	flea	11	5074	2.5	2.5	2.5	3.1	5109	chr2L	20005871	intron	CG43861 -	chr2L	20008426	intron	CG43861 -	chr2L	20010980	intron	CG43861 -	chr2L_11_20005001	chr2L_20005001	RAL-810
391	chr2L	20272121	20272134	chr2L	20282831	20282845	copia	6	10711	3.5	7.0	5.2	1.0	10724	chr2L	20272121	intergenic	not near genes	chr2L	20277483	intergenic	not near genes	chr2L	20282845	intergenic	not near genes	chr2L_6_20275001	chr2L_20275001	RAL-810
395	chr2L	20303159	20303184	chr2L	20310627	20310652	blood	11	7468	0.0	3.5	1.8	3.9	7493	chr2L	20303159	intergenic	not near genes	chr2L	20306906	intergenic	not near genes	chr2L	20310652	intergenic	not near genes	chr2L_11_20305001	chr2L_20305001	RAL-810
397	chr2L	20372231	20372246	chr2L	20372471	20372487	pogo	8	241	0.5	2.0	1.2	3.6	256	chr2L	20372231	intergenic	Ugt37a1 -	chr2L	20372359	intergenic	Ugt37a1 -	chr2L	20372487	exon	Ugt37a1 -	chr2L_8_20370001	chr2L_20370001	RAL-810
400	chr2L	20568664	20568686	chr2L	20569054	20569076	X-element	4	390	2.0	3.0	2.5	1.1	412	chr2L	20568664	intron	CR45347 +	chr2L	20568870	intron	CR45347 +	chr2L	20569076	intron	CR45347 +	chr2L_4_20565001	chr2L_20565001	RAL-810
401	chr2L	20576223	20576235	chr2L	20583692	20583704	blood	4	7469	4.5	3.5	4.0	0.8	7481	chr2L	20576223	intergenic	not near genes	chr2L	20579964	intergenic	not near genes	chr2L	20583704	3` UTR	CR44909 -	chr2L_4_20575001	chr2L_20575001	RAL-810
407	chr2L	20835807	20835839	chr2L	20836524	20836555	Quasimodo	9	717	3.0	4.0	3.5	2.0	748	chr2L	20835807	5` UTR	Oseg5 -	chr2L	20836181	intergenic	Oseg5 -,Spn38F -	chr2L	20836555	intergenic	Spn38F -	chr2L_9_20835001	chr2L_20835001	RAL-810
410	chr2L	20976641	20976670	chr2L	20981456	20981485	X-element	4	4815	1.5	4.0	2.8	1.1	4844	chr2L	20976641	intron	CG42238 -	chr2L	20979063	intron	CG42238 -	chr2L	20981485	intron	CG42238 -	chr2L_4_20975001	chr2L_20975001	RAL-810
412	chr2L	21020283	21020308	chr2L	21023960	21023985	NOF	5	3677	0.5	3.0	1.8	1.8	3702	chr2L	21020283	intron	CG42238 -	chr2L	21022134	intron	CG42238 -	chr2L	21023985	intron	CG42238 -	chr2L_5_21020001	chr2L_21020001	RAL-810
413	chr2L	21041133	21041166	chr2L	21049394	21049427	Tirant	7	8260	4.0	2.5	3.2	1.7	8294	chr2L	21041133	intron	CG42238 -	chr2L	21045280	intron	CG42238 -	chr2L	21049427	intron	CG42238 -	chr2L_7_21045001	chr2L_21045001	RAL-810
418	chr2L	21347549	21347583	chr2L	21355021	21355054	blood	7	7471	4.0	2.0	3.0	1.8	7505	chr2L	21347549	intron	Tsp39D +	chr2L	21351302	intron	Tsp39D +	chr2L	21355054	intron	Tsp39D +	chr2L_7_21350001	chr2L_21350001	RAL-810
420	chr2L	21597032	21597058	chr2L	21604776	21604802	roo	6	7744	3.0	2.0	2.5	1.7	7770	chr2L	21597032	intergenic	not near genes	chr2L	21600917	intergenic	not near genes	chr2L	21604802	intergenic	not near genes	chr2L_6_21600001	chr2L_21600001	RAL-810
422	chr2L	21691832	21691851	chr2L	21698302	21698321	Burdock	5	6470	4.5	0.0	2.2	1.6	6489	chr2L	21691832	intron	CG31619 +	chr2L	21695076	intron	CG31619 +	chr2L	21698321	intron	CG31619 +	chr2L_5_21695001	chr2L_21695001	RAL-810
427	chr2L	21981680	21981704	chr2L	21990844	21990869	roo	8	9165	4.5	2.0	3.2	1.9	9189	chr2L	21981680	exon	CG2528 -	chr2L	21986274	intron	CG2528 -	chr2L	21990869	exon	CG2528 -	chr2L_8_21985001	chr2L_21985001	RAL-810
431	chr2L	22258618	22258647	chr2L	22260742	22260771	G6	6	2124	1.0	2.0	1.5	2.4	2153	chr2L	22258618	intergenic	Tif-IA +	chr2L	22259694	intergenic	not near genes	chr2L	22260771	intergenic	not near genes	chr2L_6_22255001	chr2L_22255001	RAL-810
436	chr2L	22446019	22446028	chr2L	22506892	22506901	HMS-Beagle	7	60873	16.5	29.5	23.0	0.3	60882	chr2L	22446019	intergenic	not near genes	chr2L	22476460	intergenic	not near genes	chr2L	22506901	intergenic	not near genes	chr2L_7_22475001	chr2L_22475001	RAL-810
438	chr2L	22581973	22581989	chr2L	22583762	22583778	S-element	5	1789	3.5	3.0	3.2	1.2	1805	chr2L	22581973	intron	CG17494 +	chr2L	22582876	intron	CG17494 +	chr2L	22583778	intron	CG17494 +	chr2L_5_22580001	chr2L_22580001	RAL-810
439	chr2L	22679800	22679825	chr2L	22684572	22684595	F-element	8	4772	2.0	4.0	3.0	2.0	4795	chr2L	22679800	intron	CG40006 -	chr2L	22682198	intron	CG40006 -	chr2L	22684595	intron	CG40006 -	chr2L_8_22680001	chr2L_22680001	RAL-810
440	chr2L	22776426	22776452	chr2L	22778215	22778241	S-element	7	1789	2.5	3.0	2.8	1.8	1815	chr2L	22776426	intergenic	not near genes	chr2L	22777334	intergenic	not near genes	chr2L	22778241	intergenic	not near genes	chr2L_7_22775001	chr2L_22775001	RAL-810
442	chr2R	469971	469982	chr2R	473212	473213	F-element	4	3238	1.0	3.0	2.0	1.3	3242	chr2R	469971	intergenic	not near genes	chr2R	471592	intergenic	not near genes	chr2R	473213	intergenic	not near genes	chr2R_4_470001	chr2R_470001	RAL-810
443	chr2R	529321	529357	chr2R	537946	537982	Max-element	5	8625	3.5	1.0	2.2	1.6	8661	chr2R	529321	intron	CG40378 +	chr2R	533652	intron	CG40378 +	chr2R	537982	intron	CG40378 +	chr2R_5_530001	chr2R_530001	RAL-810
446	chr2R	1082369	1082372	chr2R	1087131	1087131	Doc	4	4768	6.5	3.0	4.8	0.7	4762	chr2R	1082369	intron	rl +	chr2R	1084750	intron	rl +	chr2R	1087131	intron	rl +	chr2R_4_1080001	chr2R_1080001	RAL-810
450	chr2R	2498987	2499011	chr2R	2508131	2508158	roo	7	9147	5.5	4.0	4.8	1.2	9171	chr2R	2498987	intron	MFS17 -	chr2R	2503572	intron	MFS17 -	chr2R	2508158	intron	MFS17 -	chr2R_7_2500001	chr2R_2500001	RAL-810
451	chr2R	3532617	3532645	chr2R	3536060	3536088	Doc	6	3443	1.5	3.0	2.2	1.9	3471	chr2R	3532617	intergenic	not near genes	chr2R	3534352	intergenic	not near genes	chr2R	3536088	intergenic	not near genes	chr2R_6_3530001	chr2R_3530001	RAL-810
455	chr2R	4622958	4622988	chr2R	4624117	4624147	1360	7	1158	1.5	3.5	2.5	2.0	1189	chr2R	4622958	intergenic	CR44101 -	chr2R	4623552	intergenic	not near genes	chr2R	4624147	intergenic	not near genes	chr2R_7_4620001	chr2R_4620001	RAL-810
457	chr2R	4750339	4750377	chr2R	4751496	4751534	1360	6	1157	1.5	3.0	2.2	1.9	1195	chr2R	4750339	intron	conu +	chr2R	4750936	intron	conu +	chr2R	4751534	intron	conu +	chr2R_6_4750001	chr2R_4750001	RAL-810
469	chr2R	5417993	5418027	chr2R	5420625	5420659	Burdock	9	2632	5.5	2.0	3.8	1.9	2666	chr2R	5417993	intron	laccase2 +	chr2R	5419326	intron	laccase2 +	chr2R	5420659	intron	laccase2 +	chr2R_9_5415001	chr2R_5415001	RAL-810
475	chr2R	5543197	5543223	chr2R	5547281	5547307	invader1	12	4084	0.0	4.0	2.0	4.0	4110	chr2R	5543197	intron	CG30438 +	chr2R	5545252	intron	CG30438 +	chr2R	5547307	intron	CG30438 +	chr2R_12_5545001	chr2R_5545001	RAL-810
480	chr2R	5869296	5869299	chr2R	5874372	5874375	flea	4	5076	5.5	6.0	5.8	0.6	5079	chr2R	5869296	intergenic	not near genes	chr2R	5871836	intergenic	not near genes	chr2R	5874375	intergenic	not near genes	chr2R_4_5870001	chr2R_5870001	RAL-810
483	chr2R	5902167	5902188	chr2R	5909725	5909745	17.6	7	7558	4.0	8.5	6.2	1.0	7578	chr2R	5902167	intron	CG43366 +	chr2R	5905956	intron	CG43366 +	chr2R	5909745	intron	CG43366 +	chr2R_7_5905001	chr2R_5905001	RAL-810
488	chr2R	6096722	6096751	chr2R	6101917	6101946	BS	4	5194	4.0	5.5	4.8	0.7	5224	chr2R	6096722	intron	EcR -	chr2R	6099334	intron	EcR -	chr2R	6101946	intron	EcR -	chr2R_4_6095001	chr2R_6095001	RAL-810
498	chr2R	6494525	6494544	chr2R	6499287	6499306	F-element	6	4761	3.0	3.0	3.0	1.5	4781	chr2R	6494525	intergenic	not near genes	chr2R	6496916	intergenic	not near genes	chr2R	6499306	intergenic	not near genes	chr2R_6_6495001	chr2R_6495001	RAL-810
510	chr2R	7139948	7139952	chr2R	7141440	7141444	hopper2	4	1492	5.0	5.0	5.0	0.7	1496	chr2R	7139948	intergenic	not near genes	chr2R	7140696	intergenic	not near genes	chr2R	7141444	intergenic	not near genes	chr2R_4_7140001	chr2R_7140001	RAL-810
511	chr2R	7196573	7196601	chr2R	7201348	7201374	F-element	9	4775	2.5	2.5	2.5	2.6	4801	chr2R	7196573	intron	pk +	chr2R	7198974	intron	pk +	chr2R	7201374	intron	pk +	chr2R_9_7195001	chr2R_7195001	RAL-810
513	chr2R	7235828	7235852	chr2R	7240920	7240943	jockey	4	5092	2.0	1.5	1.8	1.4	5115	chr2R	7235828	intergenic	not near genes	chr2R	7238386	intergenic	not near genes	chr2R	7240943	intergenic	not near genes	chr2R_4_7235001	chr2R_7235001	RAL-810
516	chr2R	7434897	7434916	chr2R	7439198	7439217	Juan	6	4301	5.0	9.5	7.2	0.7	4320	chr2R	7434897	intergenic	so +	chr2R	7437057	intergenic	not near genes	chr2R	7439217	intergenic	not near genes	chr2R_6_7435001	chr2R_7435001	RAL-810
520	chr2R	7608406	7608432	chr2R	7613609	7613634	I-element	6	5203	2.0	0.0	1.0	3.0	5228	chr2R	7608406	intron	CG1358 -	chr2R	7611020	intron	CG1358 -	chr2R	7613634	intron	CG1358 -	chr2R_6_7610001	chr2R_7610001	RAL-810
524	chr2R	7815671	7815704	chr2R	7822140	7822173	Burdock	10	6469	4.5	4.5	4.5	1.8	6502	chr2R	7815671	intergenic	CG1882 +	chr2R	7818922	intergenic	not near genes	chr2R	7822173	3` UTR	cathD -	chr2R_10_7815001	chr2R_7815001	RAL-810
526	chr2R	7869191	7869207	chr2R	7873977	7873993	Doc	9	4786	3.0	3.5	3.2	2.1	4802	chr2R	7869191	intron	Dgk -	chr2R	7871592	intron	Dgk -	chr2R	7873993	intron	Dgk -	chr2R_9_7870001	chr2R_7870001	RAL-810
538	chr2R	8330871	8330892	chr2R	8331357	8331378	roo	5	486	2.0	4.5	3.2	1.2	507	chr2R	8330871	intron	pdm3 +	chr2R	8331124	intron	pdm3 +	chr2R	8331378	intron	pdm3 +	chr2R_5_8330001	chr2R_8330001	RAL-810
545	chr2R	8566030	8566065	chr2R	8566982	8567009	1360	6	948	2.5	0.0	1.2	2.7	979	chr2R	8566030	5` UTR	Cyp6a14 -	chr2R	8566520	5` UTR	Cyp6a14 -	chr2R	8567009	5` UTR	Cyp6a14 -	chr2R_6_8565001	chr2R_8565001	RAL-810
548	chr2R	8722764	8722792	chr2R	8723005	8723033	pogo	6	241	3.5	1.0	2.2	1.9	269	chr2R	8722764	intron	CG14767 -	chr2R	8722898	intron	CG14767 -	chr2R	8723033	intron	CG14767 -	chr2R_6_8720001	chr2R_8720001	RAL-810
550	chr2R	8777935	8777944	chr2R	8784138	8784148	diver	6	6203	4.5	4.0	4.2	1.2	6213	chr2R	8777935	intergenic	not near genes	chr2R	8781042	intergenic	not near genes	chr2R	8784148	intergenic	not near genes	chr2R_6_8780001	chr2R_8780001	RAL-810
556	chr2R	9151305	9151335	chr2R	9157775	9157805	Burdock	14	6470	4.5	4.5	4.5	2.5	6500	chr2R	9151305	3` UTR	CG30345 +	chr2R	9154555	intergenic	not near genes	chr2R	9157805	intergenic	CG8008 -	chr2R_14_9150001	chr2R_9150001	RAL-810
558	chr2R	9212692	9212721	chr2R	9213178	9213205	roo	11	485	3.0	1.5	2.2	3.4	513	chr2R	9212692	intergenic	CR45309 +	chr2R	9212948	intergenic	CR45309 +	chr2R	9213205	5` UTR	CR45309 +	chr2R_11_9210001	chr2R_9210001	RAL-810
563	chr2R	9480083	9480105	chr2R	9490609	9490636	roo	6	10530	2.0	3.5	2.8	1.6	10553	chr2R	9480083	intergenic	not near genes	chr2R	9485360	intergenic	not near genes	chr2R	9490636	intergenic	not near genes	chr2R_6_9485001	chr2R_9485001	RAL-810
567	chr2R	9726610	9726641	chr2R	9734161	9734192	17.6	13	7551	3.0	2.0	2.5	3.7	7582	chr2R	9726610	intron	sqa -	chr2R	9730401	intron	sqa -	chr2R	9734192	intron	sqa -	chr2R_13_9730001	chr2R_9730001	RAL-810
571	chr2R	10176877	10176910	chr2R	10186044	10186077	roo	9	9167	3.5	3.0	3.2	2.1	9200	chr2R	10176877	intron	KCNQ -	chr2R	10181477	intron	KCNQ -	chr2R	10186077	intron	KCNQ -	chr2R_9_10180001	chr2R_10180001	RAL-810
579	chr2R	10585573	10585584	chr2R	10594155	10594164	Tirant	5	8582	3.0	2.5	2.8	1.3	8591	chr2R	10585573	intron	psq +	chr2R	10589868	intron	psq +	chr2R	10594164	intron	psq +	chr2R_5_10585001	chr2R_10585001	RAL-810
580	chr2R	10622351	10622381	chr2R	10637115	10637146	mdg1	6	14764	3.5	2.5	3.0	1.5	14795	chr2R	10622351	intron	CG11883 +	chr2R	10629748	intron	CG11883 +	chr2R	10637146	intron	CG11883 +	chr2R_6_10625001	chr2R_10625001	RAL-810
588	chr2R	11009814	11009844	chr2R	11018987	11019016	roo	9	9172	3.0	1.5	2.2	2.8	9202	chr2R	11009814	intron	luna -	chr2R	11014415	intron	luna -	chr2R	11019016	intron	luna -	chr2R_9_11010001	chr2R_11010001	RAL-810
589	chr2R	11019887	11019905	chr2R	11024951	11024971	jockey	5	5062	3.0	2.0	2.5	1.4	5084	chr2R	11019887	intron	luna -	chr2R	11022429	intron	luna -	chr2R	11024971	intron	luna -	chr2R_5_11020001	chr2R_11020001	RAL-810
593	chr2R	11207820	11207848	chr2R	11208013	11208041	BS	8	192	5.5	5.5	5.5	1.2	221	chr2R	11207820	intron	shn +	chr2R	11207930	intron	shn +	chr2R	11208041	intron	shn +	chr2R_8_11205001	chr2R_11205001	RAL-810
595	chr2R	11297616	11297649	chr2R	11301937	11301970	flea	15	4320	8.0	3.0	5.5	2.3	4354	chr2R	11297616	intergenic	CG42336 -	chr2R	11299793	intergenic	not near genes	chr2R	11301970	5` UTR	CG7741 +	chr2R_15_11295001	chr2R_11295001	RAL-810
598	chr2R	11472647	11472680	chr2R	11473844	11473876	pogo	6	1197	3.0	6.5	4.8	1.0	1229	chr2R	11472647	intergenic	not near genes	chr2R	11473262	intergenic	not near genes	chr2R	11473876	intergenic	not near genes	chr2R_6_11470001	chr2R_11470001	RAL-810
612	chr2R	12501696	12501722	chr2R	12503857	12503864	Rt1c	5	2158	0.5	1.5	1.0	2.5	2168	chr2R	12501696	intron	fdl -	chr2R	12502780	intron	fdl -	chr2R	12503864	intron	fdl -	chr2R_5_12500001	chr2R_12500001	RAL-810
614	chr2R	12707519	12707548	chr2R	12715885	12715914	roo	12	8366	2.0	4.0	3.0	3.0	8395	chr2R	12707519	intron	CG42663 +	chr2R	12711716	intron	CG42663 +	chr2R	12715914	intron	CG42663 +	chr2R_12_12710001	chr2R_12710001	RAL-810
616	chr2R	12819459	12819478	chr2R	12824528	12824546	jockey	5	5069	2.5	5.0	3.8	1.0	5087	chr2R	12819459	intergenic	not near genes	chr2R	12822002	intergenic	not near genes	chr2R	12824546	intergenic	not near genes	chr2R_5_12820001	chr2R_12820001	RAL-810
620	chr2R	13136853	13136869	chr2R	13141651	13141667	Doc	5	4797	3.0	5.0	4.0	1.0	4814	chr2R	13136853	exon	Cap-G +	chr2R	13139260	intron	Cap-G +	chr2R	13141667	intron	Cap-G +	chr2R_5_13135001	chr2R_13135001	RAL-810
631	chr2R	13580503	13580530	chr2R	13580853	13580880	jockey	9	349	1.5	7.0	4.2	1.7	377	chr2R	13580503	3` UTR	CG6191 -	chr2R	13580692	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580880	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_9_13580001	chr2R_13580001	RAL-810
645	chr2R	14394231	14394244	chr2R	14399020	14399033	Doc	7	4789	3.0	3.0	3.0	1.8	4802	chr2R	14394231	intergenic	not near genes	chr2R	14396632	intergenic	not near genes	chr2R	14399033	intergenic	not near genes	chr2R_7_14395001	chr2R_14395001	RAL-810
646	chr2R	14497394	14497419	chr2R	14498560	14498585	1360	11	1166	4.0	7.0	5.5	1.7	1191	chr2R	14497394	3` UTR	Cpsf160 -	chr2R	14497990	intron	Cpsf160 -	chr2R	14498585	3` UTR	Cpsf160 -	chr2R_11_14495001	chr2R_14495001	RAL-810
655	chr2R	14889208	14889232	chr2R	14897816	14897840	Max-element	10	8608	6.0	0.5	3.2	2.4	8632	chr2R	14889208	intergenic	Cyp6a8 -	chr2R	14893524	intergenic	not near genes	chr2R	14897840	intergenic	not near genes	chr2R_10_14890001	chr2R_14890001	RAL-810
657	chr2R	15004727	15004760	chr2R	15005056	15005089	jockey	9	329	1.0	0.5	0.8	5.0	362	chr2R	15004727	intergenic	not near genes	chr2R	15004908	intergenic	not near genes	chr2R	15005089	intergenic	not near genes	chr2R_9_15000001	chr2R_15000001	RAL-810
658	chr2R	15015454	15015488	chr2R	15022878	15022912	mdg1	16	7424	3.0	3.0	3.0	4.0	7458	chr2R	15015454	intron	hbs +	chr2R	15019183	intron	hbs +	chr2R	15022912	intron	hbs +	chr2R_16_15015001	chr2R_15015001	RAL-810
660	chr2R	15084982	15085003	chr2R	15092031	15092052	297	7	7049	4.0	2.5	3.2	1.7	7070	chr2R	15084982	intergenic	not near genes	chr2R	15088517	intergenic	not near genes	chr2R	15092052	5` UTR	CR44457 +	chr2R_7_15085001	chr2R_15085001	RAL-810
678	chr2R	16539636	16539671	chr2R	16544845	16544880	copia	10	5209	3.0	5.5	4.2	1.9	5244	chr2R	16539636	intergenic	not near genes	chr2R	16542258	intergenic	not near genes	chr2R	16544880	intergenic	not near genes	chr2R_10_16540001	chr2R_16540001	RAL-810
691	chr2R	17147242	17147270	chr2R	17152273	17152301	jockey	10	5031	1.5	4.0	2.8	2.6	5059	chr2R	17147242	intergenic	not near genes	chr2R	17149772	intergenic	not near genes	chr2R	17152301	intergenic	not near genes	chr2R_10_17145001	chr2R_17145001	RAL-810
695	chr2R	17236519	17236539	chr2R	17241723	17241743	copia	9	5204	0.5	3.5	2.0	3.0	5224	chr2R	17236519	intron	mbl +	chr2R	17239131	intron	mbl +	chr2R	17241743	intron	mbl +	chr2R_9_17235001	chr2R_17235001	RAL-810
698	chr2R	17485912	17485935	chr2R	17490674	17490697	F-element	7	4762	7.5	0.0	3.8	1.5	4785	chr2R	17485912	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488304	intron	NT5E-2 +	chr2R	17490697	intron	NT5E-2 +	chr2R_7_17485001	chr2R_17485001	RAL-810
701	chr2R	17784029	17784049	chr2R	17784266	17784290	pogo	10	239	0.0	4.5	2.2	3.1	261	chr2R	17784029	intergenic	mir-31a -	chr2R	17784160	intergenic	mir-31a -	chr2R	17784290	intergenic	mir-31a -	chr2R_10_17780001	chr2R_17780001	RAL-810
708	chr2R	18111691	18111701	chr2R	18115559	18115568	F-element	6	3868	5.0	4.0	4.5	1.1	3877	chr2R	18111691	intergenic	not near genes	chr2R	18113630	intergenic	not near genes	chr2R	18115568	intergenic	not near genes	chr2R_6_18110001	chr2R_18110001	RAL-810
711	chr2R	18358387	18358422	chr2R	18372599	18372634	roo	14	14211	5.0	4.0	4.5	2.5	14247	chr2R	18358387	intergenic	not near genes	chr2R	18365510	intergenic	not near genes	chr2R	18372634	intergenic	not near genes	chr2R_14_18365001	chr2R_18365001	RAL-810
719	chr2R	18575803	18575825	chr2R	18581991	18582013	3S18	8	6187	3.5	1.5	2.5	2.3	6210	chr2R	18575803	intron	GEFmeso -	chr2R	18578908	intron	GEFmeso -	chr2R	18582013	intron	GEFmeso -	chr2R_8_18575001	chr2R_18575001	RAL-810
720	chr2R	18590866	18590899	chr2R	18600017	18600051	roo	6	9152	1.0	1.5	1.2	2.7	9185	chr2R	18590866	intron	GEFmeso -	chr2R	18595458	intron	GEFmeso -	chr2R	18600051	intron	GEFmeso -	chr2R_6_18595001	chr2R_18595001	RAL-810
748	chr2R	19776614	19776626	chr2R	19779921	19779948	jockey	4	3319	0.0	6.0	3.0	1.0	3334	chr2R	19776614	intergenic	not near genes	chr2R	19778281	intergenic	not near genes	chr2R	19779948	intergenic	not near genes	chr2R_4_19775001	chr2R_19775001	RAL-810
749	chr2R	19957455	19957462	chr2R	19962636	19962664	copia	4	5197	0.0	3.5	1.8	1.4	5209	chr2R	19957455	intergenic	CG44623 +	chr2R	19960060	intergenic	not near genes	chr2R	19962664	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	RAL-810
764	chr2R	20739441	20739476	chr2R	20744209	20744244	F-element	5	4768	4.0	2.0	3.0	1.2	4803	chr2R	20739441	intron	dpr +	chr2R	20741842	intron	dpr +	chr2R	20744244	intron	dpr +	chr2R_5_20740001	chr2R_20740001	RAL-810
770	chr2R	21151119	21151146	chr2R	21153752	21153779	opus	7	2633	7.0	2.0	4.5	1.3	2660	chr2R	21151119	intron	CG30389 -	chr2R	21152449	intron	CG30389 -	chr2R	21153779	intron	CG30389 -	chr2R_7_21150001	chr2R_21150001	RAL-810
773	chr2R	21738290	21738311	chr2R	21747441	21747471	roo	4	9155	1.5	1.5	1.5	1.6	9181	chr2R	21738290	intergenic	not near genes	chr2R	21742880	intergenic	not near genes	chr2R	21747471	intergenic	not near genes	chr2R_4_21740001	chr2R_21740001	RAL-810
774	chr2R	21753097	21753117	chr2R	21753581	21753602	roo	10	485	2.0	2.5	2.2	3.1	505	chr2R	21753097	intergenic	not near genes	chr2R	21753350	intergenic	not near genes	chr2R	21753602	intergenic	not near genes	chr2R_10_21750001	chr2R_21750001	RAL-810
776	chr2R	21809532	21809556	chr2R	21817772	21817796	roo	7	8240	4.0	1.5	2.8	1.8	8264	chr2R	21809532	intergenic	not near genes	chr2R	21813664	intergenic	not near genes	chr2R	21817796	intergenic	not near genes	chr2R_7_21810001	chr2R_21810001	RAL-810
792	chr2R	22349690	22349709	chr2R	22351474	22351493	jockey	8	1783	4.0	4.5	4.2	1.5	1803	chr2R	22349690	intron	Liprin-gamma -	chr2R	22350592	intron	Liprin-gamma -	chr2R	22351493	intron	Liprin-gamma -	chr2R_8_22350001	chr2R_22350001	RAL-810
793	chr2R	22360386	22360398	chr2R	22360819	22360828	jockey	6	431	5.0	2.0	3.5	1.3	442	chr2R	22360386	intron	Liprin-gamma -	chr2R	22360607	intron	Liprin-gamma -	chr2R	22360828	intron	Liprin-gamma -	chr2R_6_22360001	chr2R_22360001	RAL-810
794	chr2R	22525751	22525785	chr2R	22529306	22529338	jockey	14	3554	3.5	4.0	3.8	2.9	3587	chr2R	22525751	intron	px -	chr2R	22527544	intron	px -	chr2R	22529338	intron	px -	chr2R_14_22525001	chr2R_22525001	RAL-810
798	chr2R	22774967	22775002	chr2R	22775386	22775421	jockey	11	418	2.5	1.5	2.0	3.7	454	chr2R	22774967	intron	CG42260 -	chr2R	22775194	intron	CG42260 -	chr2R	22775421	intron	CG42260 -	chr2R_11_22775001	chr2R_22775001	RAL-810
800	chr2R	22843022	22843053	chr2R	22844984	22845015	flea	10	1962	5.0	5.5	5.2	1.6	1993	chr2R	22843022	intergenic	CG9826 +	chr2R	22844018	intergenic	not near genes	chr2R	22845015	intergenic	not near genes	chr2R_10_22840001	chr2R_22840001	RAL-810
806	chr2R	23402608	23402634	chr2R	23407684	23407710	flea	11	5076	5.5	3.5	4.5	2.0	5102	chr2R	23402608	intergenic	CG3520 -	chr2R	23405159	intergenic	not near genes	chr2R	23407710	intergenic	not near genes	chr2R_11_23405001	chr2R_23405001	RAL-810
815	chr2R	23914298	23914331	chr2R	23921922	23921955	412	7	7624	1.0	1.5	1.2	3.2	7657	chr2R	23914298	exon	kcc +	chr2R	23918126	intron	kcc +	chr2R	23921955	intron	kcc +	chr2R_7_23915001	chr2R_23915001	RAL-810
818	chr2R	24177234	24177268	chr2R	24184719	24184753	412	11	7485	4.0	1.5	2.8	2.9	7519	chr2R	24177234	3` UTR	Nop60B +	chr2R	24180994	intron	Nop60B +	chr2R	24184753	3` UTR	Nop60B +	chr2R_11_24180001	chr2R_24180001	RAL-810
824	chr2R	24353427	24353462	chr2R	24361789	24361802	roo	7	8359	0.0	1.5	0.8	3.9	8375	chr2R	24353427	intron,intron	bs +,CR44811 -	chr2R	24357614	intron,intron	bs +,CR44811 -	chr2R	24361802	intron,intron	bs +,CR44811 -	chr2R_7_24355001	chr2R_24355001	RAL-810
833	chr2R	24647588	24647617	chr2R	24655145	24655174	412	6	7556	4.5	1.5	3.0	1.5	7586	chr2R	24647588	intergenic	not near genes	chr2R	24651381	intergenic	not near genes	chr2R	24655174	intergenic	not near genes	chr2R_6_24650001	chr2R_24650001	RAL-810
834	chr2R	24727884	24727918	chr2R	24735392	24735411	mdg1	8	7506	0.5	1.5	1.0	4.0	7527	chr2R	24727884	intron	Mid1 -	chr2R	24731648	intron	Mid1 -	chr2R	24735411	intron	Mid1 -	chr2R_8_24730001	chr2R_24730001	RAL-810
839	chr2R	25141649	25141676	chr2R	25159338	25159366	roo	6	17689	3.0	4.5	3.8	1.2	17717	chr2R	25141649	intergenic	not near genes	chr2R	25150508	intergenic	not near genes	chr2R	25159366	intergenic	not near genes	chr2R_6_25150001	chr2R_25150001	RAL-810
846	chr3L	110213	110243	chr3L	119380	119410	roo	6	9167	3.0	4.0	3.5	1.3	9197	chr3L	110213	intergenic	not near genes	chr3L	114812	intergenic	not near genes	chr3L	119410	intergenic	not near genes	chr3L_6_110001	chr3L_110001	RAL-810
848	chr3L	402691	402714	chr3L	409744	409761	297	6	7052	4.0	5.0	4.5	1.1	7070	chr3L	402691	intergenic	not near genes	chr3L	406226	intergenic	not near genes	chr3L	409761	intergenic	not near genes	chr3L_6_405001	chr3L_405001	RAL-810
861	chr3L	857999	858019	chr3L	866480	866499	Tirant	6	8477	1.5	0.5	1.0	3.0	8500	chr3L	857999	intergenic	not near genes	chr3L	862249	intergenic	not near genes	chr3L	866499	5` UTR	CG12502 +	chr3L_6_860001	chr3L_860001	RAL-810
863	chr3L	925183	925210	chr3L	932609	932636	mdg1	10	7426	2.0	3.0	2.5	2.9	7453	chr3L	925183	intron	Glut1 +	chr3L	928910	intron	Glut1 +	chr3L	932636	intron	Glut1 +	chr3L_10_925001	chr3L_925001	RAL-810
864	chr3L	939776	939801	chr3L	940889	940922	jockey	10	1120	3.5	4.5	4.0	2.0	1146	chr3L	939776	intron	Glut1 +	chr3L	940349	intron	Glut1 +	chr3L	940922	intron	Glut1 +	chr3L_10_940001	chr3L_940001	RAL-810
870	chr3L	1047365	1047385	chr3L	1055163	1055193	412	4	7808	2.0	2.5	2.2	1.2	7828	chr3L	1047365	intron	bab1 -	chr3L	1051279	intron	bab1 -	chr3L	1055193	intron	bab1 -	chr3L_4_1050001	chr3L_1050001	RAL-810
874	chr3L	1154129	1154163	chr3L	1163279	1163313	roo	10	9150	1.0	2.5	1.8	3.6	9184	chr3L	1154129	intron	bab2 -	chr3L	1158721	intron	bab2 -	chr3L	1163313	intron	bab2 -	chr3L_10_1155001	chr3L_1155001	RAL-810
875	chr3L	1219596	1219623	chr3L	1227329	1227356	412	10	7731	2.5	4.0	3.2	2.4	7760	chr3L	1219596	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227356	intron	mwh +	chr3L_10_1220001	chr3L_1220001	RAL-810
879	chr3L	1505996	1506020	chr3L	1513593	1513617	17.6	10	7597	6.0	4.0	5.0	1.7	7621	chr3L	1505996	intron,intron	Psa +,cue -	chr3L	1509806	intron,intron	Psa +,cue -	chr3L	1513617	intron,intron	Psa +,cue -	chr3L_10_1505001	chr3L_1505001	RAL-810
882	chr3L	1740854	1740883	chr3L	1741097	1741126	pogo	7	243	5.0	5.0	5.0	1.2	272	chr3L	1740854	intron	Gk +	chr3L	1740990	intron	Gk +	chr3L	1741126	intron	Gk +	chr3L_7_1740001	chr3L_1740001	RAL-810
885	chr3L	2108248	2108282	chr3L	2113452	2113486	copia	7	5203	3.0	4.0	3.5	1.6	5238	chr3L	2108248	intron	sls -	chr3L	2110867	intron	sls -	chr3L	2113486	intron	sls -	chr3L_7_2110001	chr3L_2110001	RAL-810
890	chr3L	2447503	2447536	chr3L	2456659	2456692	roo	9	9156	1.0	1.5	1.2	4.1	9189	chr3L	2447503	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456692	intron	CG45186 +	chr3L_9_2450001	chr3L_2450001	RAL-810
902	chr3L	2927843	2927856	chr3L	2936120	2936133	Tirant	5	8277	4.5	3.0	3.8	1.0	8290	chr3L	2927843	intron	Shab +	chr3L	2931988	intron	Shab +	chr3L	2936133	intron	Shab +	chr3L_5_2930001	chr3L_2930001	RAL-810
903	chr3L	3040334	3040349	chr3L	3042123	3042138	S-element	6	1789	5.5	0.5	3.0	1.5	1804	chr3L	3040334	3` UTR	CG2162 +	chr3L	3041236	intergenic	not near genes	chr3L	3042138	intergenic	Jafrac2 +	chr3L_6_3040001	chr3L_3040001	RAL-810
904	chr3L	3051743	3051756	chr3L	3051985	3051998	pogo	6	242	11.5	0.0	5.8	0.9	255	chr3L	3051743	3` UTR	CG32485 +	chr3L	3051870	intergenic	CG32485 +	chr3L	3051998	intergenic	CG32485 +	chr3L_6_3050001	chr3L_3050001	RAL-810
907	chr3L	3281443	3281472	chr3L	3281939	3281968	Doc	7	496	0.5	4.0	2.2	2.2	525	chr3L	3281443	intron	CG12017 +	chr3L	3281706	intron	CG12017 +	chr3L	3281968	intron	CG12017 +	chr3L_7_3280001	chr3L_3280001	RAL-810
910	chr3L	3475077	3475110	chr3L	3475521	3475553	jockey	8	443	2.0	2.0	2.0	2.7	476	chr3L	3475077	intron	CG42324 +	chr3L	3475315	intron	CG42324 +	chr3L	3475553	intron	CG42324 +	chr3L_8_3475001	chr3L_3475001	RAL-810
917	chr3L	3601297	3601312	chr3L	3606608	3606623	copia	7	5311	4.5	1.0	2.8	1.8	5326	chr3L	3601297	intron	Eip63E +	chr3L	3603960	intron	Eip63E +	chr3L	3606623	intron	Eip63E +	chr3L_7_3600001	chr3L_3600001	RAL-810
921	chr3L	3833737	3833761	chr3L	3833978	3834002	pogo	7	241	3.5	3.0	3.2	1.7	265	chr3L	3833737	intron	enc +	chr3L	3833870	intron	enc +	chr3L	3834002	intron	enc +	chr3L_7_3830001	chr3L_3830001	RAL-810
929	chr3L	4328737	4328759	chr3L	4336235	4336257	412	7	7498	2.5	3.0	2.8	1.8	7520	chr3L	4328737	intron	Cip4 -	chr3L	4332497	intron	Cip4 -	chr3L	4336257	intron	Cip4 -	chr3L_7_4330001	chr3L_4330001	RAL-810
940	chr3L	4901132	4901158	chr3L	4907322	4907344	diver	9	6189	2.5	1.0	1.8	3.2	6212	chr3L	4901132	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907344	intergenic	not near genes	chr3L_9_4900001	chr3L_4900001	RAL-810
944	chr3L	5045454	5045487	chr3L	5050235	5050268	Doc	9	4781	3.5	3.5	3.5	2.0	4814	chr3L	5045454	intron	Con -	chr3L	5047861	intron	Con -	chr3L	5050268	intron	Con -	chr3L_9_5045001	chr3L_5045001	RAL-810
951	chr3L	5458060	5458089	chr3L	5466662	5466666	Max-element	4	8596	3.0	0.5	1.8	1.4	8606	chr3L	5458060	intergenic	not near genes	chr3L	5462363	intergenic	not near genes	chr3L	5466666	intergenic	not near genes	chr3L_4_5460001	chr3L_5460001	RAL-810
953	chr3L	5537736	5537755	chr3L	5538077	5538094	jockey	11	339	0.0	5.5	2.8	2.9	358	chr3L	5537736	intergenic	not near genes	chr3L	5537915	intergenic	CG10625 -	chr3L	5538094	intergenic	CG10625 -	chr3L_11_5535001	chr3L_5535001	RAL-810
956	chr3L	5910034	5910062	chr3L	5910275	5910303	pogo	4	241	1.0	0.0	0.5	2.7	269	chr3L	5910034	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910303	intron	CG13288 +	chr3L_4_5910001	chr3L_5910001	RAL-810
958	chr3L	5926333	5926351	chr3L	5926518	5926541	BS	6	189	0.5	3.0	1.8	2.1	208	chr3L	5926333	intron	Vap-33B +	chr3L	5926437	intron	Vap-33B +	chr3L	5926541	intron	Vap-33B +	chr3L_6_5925001	chr3L_5925001	RAL-810
960	chr3L	6001683	6001710	chr3L	6004383	6004410	jockey	11	2700	3.0	2.5	2.8	2.9	2727	chr3L	6001683	intron	PVRAP +	chr3L	6003046	intron	PVRAP +	chr3L	6004410	intron	PVRAP +	chr3L_11_6000001	chr3L_6000001	RAL-810
961	chr3L	6040369	6040394	chr3L	6042725	6042750	Doc	8	2356	1.0	4.0	2.5	2.3	2381	chr3L	6040369	intergenic	Jon65Aiv +	chr3L	6041560	intergenic	not near genes	chr3L	6042750	intergenic	not near genes	chr3L_8_6040001	chr3L_6040001	RAL-810
966	chr3L	6220916	6220947	chr3L	6230066	6230099	roo	12	9152	3.0	5.5	4.2	2.3	9183	chr3L	6220916	5` UTR	pncr008:3L +	chr3L	6225508	intergenic	not near genes	chr3L	6230099	intergenic	not near genes	chr3L_12_6225001	chr3L_6225001	RAL-810
968	chr3L	6335014	6335041	chr3L	6335485	6335512	297	6	469	3.5	6.5	5.0	1.0	498	chr3L	6335014	intron	CG13300 -	chr3L	6335263	intron	CG13300 -	chr3L	6335512	intron	CG13300 -	chr3L_6_6335001	chr3L_6335001	RAL-810
970	chr3L	6405667	6405688	chr3L	6432131	6432147	roo	11	26464	3.0	6.0	4.5	2.0	26480	chr3L	6405667	intron	CG42747 +	chr3L	6418907	intron	CG42747 +	chr3L	6432147	intron	CG42747 +	chr3L_11_6415001	chr3L_6415001	RAL-810
976	chr3L	6781126	6781155	chr3L	6783137	6783168	Doc	9	2013	2.0	7.0	4.5	1.6	2042	chr3L	6781126	intergenic	not near genes	chr3L	6782147	intergenic	not near genes	chr3L	6783168	intergenic	not near genes	chr3L_9_6780001	chr3L_6780001	RAL-810
978	chr3L	6855934	6855956	chr3L	6860716	6860740	Doc	4	4784	2.5	2.0	2.2	1.2	4806	chr3L	6855934	intergenic	not near genes	chr3L	6858337	intergenic	not near genes	chr3L	6860740	intergenic	not near genes	chr3L_4_6855001	chr3L_6855001	RAL-810
979	chr3L	6887518	6887547	chr3L	6895008	6895039	roo	10	7492	2.5	2.0	2.2	3.1	7521	chr3L	6887518	intergenic	not near genes	chr3L	6891278	intergenic	not near genes	chr3L	6895039	intergenic	not near genes	chr3L_10_6890001	chr3L_6890001	RAL-810
984	chr3L	6994887	6994916	chr3L	6995498	6995527	BS	5	611	0.0	2.5	1.2	2.3	640	chr3L	6994887	intergenic	bin +	chr3L	6995207	intergenic	not near genes	chr3L	6995527	intergenic	not near genes	chr3L_5_6995001	chr3L_6995001	RAL-810
985	chr3L	7129971	7129986	chr3L	7130163	7130178	BS	6	192	1.0	3.5	2.2	1.9	207	chr3L	7129971	intergenic	CG15829 +	chr3L	7130074	intergenic	CG15829 +	chr3L	7130178	intergenic	not near genes	chr3L_6_7130001	chr3L_7130001	RAL-810
990	chr3L	7377316	7377342	chr3L	7380420	7380447	297	6	3104	5.5	4.0	4.8	1.0	3131	chr3L	7377316	intron	SMSr -	chr3L	7378882	intron	SMSr -	chr3L	7380447	intron	SMSr -	chr3L_6_7375001	chr3L_7375001	RAL-810
992	chr3L	7498763	7498792	chr3L	7503540	7503567	F-element	8	4777	1.5	5.0	3.2	1.9	4804	chr3L	7498763	5` UTR	CG8539 -	chr3L	7501165	intergenic	not near genes	chr3L	7503567	intergenic	not near genes	chr3L_8_7500001	chr3L_7500001	RAL-810
996	chr3L	7793720	7793742	chr3L	7800772	7800794	297	6	7052	4.0	5.0	4.5	1.1	7074	chr3L	7793720	intron	CG32369 -	chr3L	7797257	intron	CG32369 -	chr3L	7800794	intron	CG32369 -	chr3L_6_7795001	chr3L_7795001	RAL-810
998	chr3L	7886519	7886547	chr3L	7889037	7889065	Stalker4	7	2518	1.0	2.5	1.8	2.5	2546	chr3L	7886519	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889065	intron	CG32365 +	chr3L_7_7885001	chr3L_7885001	RAL-810
999	chr3L	7916830	7916855	chr3L	7926001	7926026	roo	9	9171	1.5	3.5	2.5	2.6	9196	chr3L	7916830	3` UTR	syd -	chr3L	7921428	intron	syd -	chr3L	7926026	3` UTR	syd -	chr3L_9_7920001	chr3L_7920001	RAL-810
1000	chr3L	7985364	7985397	chr3L	7987692	7987725	NOF	11	2326	3.0	3.0	3.0	2.8	2361	chr3L	7985364	intron	nmo +	chr3L	7986544	intron	nmo +	chr3L	7987725	intron	nmo +	chr3L_11_7985001	chr3L_7985001	RAL-810
1001	chr3L	8019700	8019730	chr3L	8024112	8024143	NOF	6	4412	3.5	4.5	4.0	1.2	4443	chr3L	8019700	intron	nmo +	chr3L	8021922	intron	nmo +	chr3L	8024143	intron	nmo +	chr3L_6_8020001	chr3L_8020001	RAL-810
1008	chr3L	8498302	8498330	chr3L	8505769	8505797	blood	11	7466	2.5	4.0	3.2	2.6	7495	chr3L	8498302	intron	CG43163 -	chr3L	8502050	intron	CG43163 -	chr3L	8505797	intron	CG43163 -	chr3L_11_8500001	chr3L_8500001	RAL-810
1014	chr3L	8791271	8791305	chr3L	8796691	8796725	I-element	12	5420	3.5	6.0	4.8	2.1	5454	chr3L	8791271	exon	Fhos +	chr3L	8793998	intron	Fhos +	chr3L	8796725	intron	Fhos +	chr3L_12_8790001	chr3L_8790001	RAL-810
1018	chr3L	9076933	9076950	chr3L	9084493	9084510	412	11	7559	4.5	7.0	5.8	1.6	7577	chr3L	9076933	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084510	exon	Tequila +	chr3L_11_9080001	chr3L_9080001	RAL-810
1019	chr3L	9130557	9130572	chr3L	9134318	9134333	412	7	3760	5.5	1.0	3.2	1.7	3776	chr3L	9130557	intergenic	bol -	chr3L	9132445	intergenic	not near genes	chr3L	9134333	intergenic	Dhpr +	chr3L_7_9130001	chr3L_9130001	RAL-810
1020	chr3L	9164695	9164724	chr3L	9166162	9166191	hobo	13	1467	2.5	4.0	3.2	3.1	1496	chr3L	9164695	intron	Rdl -	chr3L	9165443	intron	Rdl -	chr3L	9166191	intron	Rdl -	chr3L_13_9165001	chr3L_9165001	RAL-810
1021	chr3L	9219243	9219274	chr3L	9219915	9219946	jockey	4	671	2.0	2.0	2.0	1.3	703	chr3L	9219243	intergenic	not near genes	chr3L	9219594	intergenic	not near genes	chr3L	9219946	intergenic	not near genes	chr3L_4_9215001	chr3L_9215001	RAL-810
1023	chr3L	9270633	9270646	chr3L	9278388	9278401	roo	6	7755	2.0	1.5	1.8	2.1	7768	chr3L	9270633	intron	GluRIB +	chr3L	9274517	intron	GluRIB +	chr3L	9278401	exon	GluRIB +	chr3L_6_9270001	chr3L_9270001	RAL-810
1027	chr3L	9443511	9443544	chr3L	9445298	9445331	S-element	15	1787	3.5	7.5	5.5	2.3	1820	chr3L	9443511	intron	CG33926 +	chr3L	9444421	intron	CG33926 +	chr3L	9445331	intron	CG33926 +	chr3L_15_9440001	chr3L_9440001	RAL-810
1032	chr3L	9571899	9571926	chr3L	9572247	9572274	jockey	9	348	4.0	3.0	3.5	2.0	375	chr3L	9571899	intron	CG42673 +	chr3L	9572086	intron	CG42673 +	chr3L	9572274	intron	CG42673 +	chr3L_9_9570001	chr3L_9570001	RAL-810
1033	chr3L	9575910	9575937	chr3L	9580987	9581014	jockey	4	5077	2.0	2.0	2.0	1.3	5104	chr3L	9575910	intron	CG42673 +	chr3L	9578462	intron	CG42673 +	chr3L	9581014	intron	CG42673 +	chr3L_4_9575001	chr3L_9575001	RAL-810
1053	chr3L	10414943	10414974	chr3L	10417311	10417346	Doc	12	2371	0.5	2.5	1.5	4.8	2403	chr3L	10414943	intergenic	CG12362 +	chr3L	10416144	intergenic	not near genes	chr3L	10417346	intergenic	not near genes	chr3L_12_10415001	chr3L_10415001	RAL-810
1070	chr3L	11087061	11087089	chr3L	11088849	11088878	S-element	5	1788	1.5	0.0	0.8	2.8	1817	chr3L	11087061	intron	JIL-1 -	chr3L	11087970	intron	JIL-1 -	chr3L	11088878	intron	JIL-1 -	chr3L_5_11085001	chr3L_11085001	RAL-810
1071	chr3L	11105297	11105306	chr3L	11107008	11107017	X-element	6	1711	7.5	2.0	4.8	1.0	1720	chr3L	11105297	intergenic	not near genes	chr3L	11106157	intergenic	not near genes	chr3L	11107017	3` UTR	CG32073 -	chr3L_6_11105001	chr3L_11105001	RAL-810
1076	chr3L	11264463	11264499	chr3L	11271415	11271451	17.6	10	6951	4.0	2.0	3.0	2.5	6988	chr3L	11264463	intergenic	not near genes	chr3L	11267957	intergenic	not near genes	chr3L	11271451	intergenic	not near genes	chr3L_10_11265001	chr3L_11265001	RAL-810
1078	chr3L	11329698	11329722	chr3L	11332903	11332926	jockey	4	3202	3.5	4.0	3.8	0.8	3228	chr3L	11329698	intergenic	not near genes	chr3L	11331312	intergenic	not near genes	chr3L	11332926	intergenic	not near genes	chr3L_4_11330001	chr3L_11330001	RAL-810
1087	chr3L	11723092	11723115	chr3L	11727887	11727910	Doc	7	4795	4.0	4.0	4.0	1.4	4818	chr3L	11723092	3` UTR	Bmcp +	chr3L	11725501	intron	Bmcp +	chr3L	11727910	3` UTR	Bmcp +	chr3L_7_11725001	chr3L_11725001	RAL-810
1092	chr3L	11864554	11864583	chr3L	11865848	11865878	pogo	6	1295	1.0	2.0	1.5	2.4	1324	chr3L	11864554	intron	CG44837 -	chr3L	11865216	intron	CG44837 -	chr3L	11865878	intron	CG44837 -	chr3L_6_11865001	chr3L_11865001	RAL-810
1113	chr3L	12874931	12874958	chr3L	12877223	12877250	jockey	9	2292	0.5	3.0	1.8	3.2	2319	chr3L	12874931	intergenic	not near genes	chr3L	12876090	intergenic	not near genes	chr3L	12877250	intergenic	not near genes	chr3L_9_12875001	chr3L_12875001	RAL-810
1115	chr3L	12919279	12919303	chr3L	12924749	12924776	Rt1c	6	5470	4.5	2.5	3.5	1.3	5497	chr3L	12919279	intergenic	not near genes	chr3L	12922028	intergenic	not near genes	chr3L	12924776	intergenic	not near genes	chr3L_6_12920001	chr3L_12920001	RAL-810
1116	chr3L	12957787	12957816	chr3L	12962269	12962298	copia	5	4482	4.0	2.5	3.2	1.2	4511	chr3L	12957787	intergenic	not near genes	chr3L	12960042	intergenic	not near genes	chr3L	12962298	intergenic	not near genes	chr3L_5_12960001	chr3L_12960001	RAL-810
1129	chr3L	13525154	13525181	chr3L	13532950	13532977	roo	10	7793	3.0	7.0	5.0	1.7	7823	chr3L	13525154	intergenic	not near genes	chr3L	13529066	intergenic	not near genes	chr3L	13532977	intergenic	not near genes	chr3L_10_13525001	chr3L_13525001	RAL-810
1137	chr3L	13804551	13804576	chr3L	13822837	13822862	roo	11	18285	2.5	3.0	2.8	2.9	18311	chr3L	13804551	intergenic	not near genes	chr3L	13813706	intergenic	not near genes	chr3L	13822862	intergenic	not near genes	chr3L_11_13810001	chr3L_13810001	RAL-810
1148	chr3L	14245567	14245591	chr3L	14245661	14245682	1360	4	93	3.0	1.5	2.2	1.2	115	chr3L	14245567	3` UTR	CR44561 -	chr3L	14245624	3` UTR	CR44561 -	chr3L	14245682	3` UTR	CR44561 -	chr3L_4_14245001	chr3L_14245001	RAL-810
1149	chr3L	14267369	14267399	chr3L	14271809	14271839	F-element	8	4439	3.0	4.5	3.8	1.7	4470	chr3L	14267369	intergenic	not near genes	chr3L	14269604	intergenic	not near genes	chr3L	14271839	intergenic	not near genes	chr3L_8_14265001	chr3L_14265001	RAL-810
1150	chr3L	14295988	14296002	chr3L	14296467	14296487	roo	7	485	5.5	4.5	5.0	1.2	499	chr3L	14295988	intron	fz +	chr3L	14296238	intron	fz +	chr3L	14296487	intron	fz +	chr3L_7_14295001	chr3L_14295001	RAL-810
1155	chr3L	14468463	14468478	chr3L	14473669	14473684	copia	6	5206	1.5	7.5	4.5	1.1	5221	chr3L	14468463	intron	bbg -	chr3L	14471074	intron	bbg -	chr3L	14473684	intron	bbg -	chr3L_6_14470001	chr3L_14470001	RAL-810
1169	chr3L	15085066	15085083	chr3L	15086232	15086249	1360	4	1166	1.0	7.0	4.0	0.8	1183	chr3L	15085066	intron	cp309 -	chr3L	15085658	intron	cp309 -	chr3L	15086249	intron	cp309 -	chr3L_4_15085001	chr3L_15085001	RAL-810
1175	chr3L	15295775	15295799	chr3L	15298618	15298642	gypsy5	10	2843	3.0	2.5	2.8	2.6	2867	chr3L	15295775	intergenic	not near genes	chr3L	15297208	intergenic	not near genes	chr3L	15298642	intergenic	Best4 +	chr3L_10_15295001	chr3L_15295001	RAL-810
1179	chr3L	15423760	15423784	chr3L	15426604	15426628	opus	9	2844	3.0	3.0	3.0	2.2	2868	chr3L	15423760	intergenic	not near genes	chr3L	15425194	intergenic	not near genes	chr3L	15426628	intergenic	not near genes	chr3L_9_15425001	chr3L_15425001	RAL-810
1190	chr3L	16184085	16184116	chr3L	16188929	16188960	X-element	9	4844	2.0	1.0	1.5	3.6	4875	chr3L	16184085	intergenic	not near genes	chr3L	16186522	intergenic	not near genes	chr3L	16188960	intergenic	not near genes	chr3L_9_16185001	chr3L_16185001	RAL-810
1194	chr3L	16493977	16494003	chr3L	16494493	16494520	jockey	8	517	5.5	2.0	3.8	1.7	543	chr3L	16493977	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494248	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494520	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_8_16490001	chr3L_16490001	RAL-810
1198	chr3L	16616518	16616543	chr3L	16621846	16621871	297	9	5327	2.5	3.0	2.8	2.4	5353	chr3L	16616518	3` UTR	Abl -	chr3L	16619194	3` UTR	Abl -	chr3L	16621871	3` UTR	Abl -	chr3L_9_16615001	chr3L_16615001	RAL-810
1200	chr3L	16684021	16684049	chr3L	16689242	16689270	copia	4	5221	7.5	1.5	4.5	0.7	5249	chr3L	16684021	intron,intron	Lasp -,CG43954 -	chr3L	16686646	intron,intron	Lasp -,CG43954 -	chr3L	16689270	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_4_16685001	chr3L_16685001	RAL-810
1208	chr3L	16945729	16945761	chr3L	16954882	16954913	roo	10	9145	1.0	2.5	1.8	3.6	9184	chr3L	16945729	exon	Obp73a +	chr3L	16950321	intergenic	not near genes	chr3L	16954913	5` UTR	Nc73EF +	chr3L_10_16950001	chr3L_16950001	RAL-810
1210	chr3L	17034933	17034969	chr3L	17035121	17035157	G2	14	188	3.0	1.0	2.0	4.7	224	chr3L	17034933	intergenic	not near genes	chr3L	17035045	intergenic	not near genes	chr3L	17035157	intergenic	not near genes	chr3L_14_17035001	chr3L_17035001	RAL-810
1213	chr3L	17085010	17085031	chr3L	17094159	17094180	roo	8	9149	2.5	7.5	5.0	1.3	9170	chr3L	17085010	intron	Rbp6 -	chr3L	17089595	intron	Rbp6 -	chr3L	17094180	intron	Rbp6 -	chr3L_8_17085001	chr3L_17085001	RAL-810
1224	chr3L	17516987	17517002	chr3L	17524545	17524560	412	6	7558	6.5	4.0	5.2	1.0	7573	chr3L	17516987	intron	CG7564 +	chr3L	17520774	intron	CG7564 +	chr3L	17524560	3` UTR	CG7564 +	chr3L_6_17520001	chr3L_17520001	RAL-810
1235	chr3L	17799811	17799840	chr3L	17801598	17801627	S-element	14	1787	1.0	2.0	1.5	5.6	1816	chr3L	17799811	intron	NUCB1 -	chr3L	17800719	intron	NUCB1 -	chr3L	17801627	intron	NUCB1 -	chr3L_14_17800001	chr3L_17800001	RAL-810
1240	chr3L	17918377	17918405	chr3L	17921180	17921208	opus	9	2803	2.5	6.0	4.2	1.7	2831	chr3L	17918377	intergenic	not near genes	chr3L	17919792	intergenic	not near genes	chr3L	17921208	intergenic	not near genes	chr3L_9_17915001	chr3L_17915001	RAL-810
1242	chr3L	18047706	18047741	chr3L	18056762	18056786	roo	8	9054	1.5	1.5	1.5	3.2	9080	chr3L	18047706	intron	Eip75B -	chr3L	18052246	intron	Eip75B -	chr3L	18056786	intron	Eip75B -	chr3L_8_18050001	chr3L_18050001	RAL-810
1260	chr3L	18506133	18506163	chr3L	18509596	18509626	F-element	9	3463	1.5	2.5	2.0	3.0	3493	chr3L	18506133	intergenic	not near genes	chr3L	18507880	intergenic	not near genes	chr3L	18509626	intergenic	not near genes	chr3L_9_18505001	chr3L_18505001	RAL-810
1261	chr3L	18528625	18528652	chr3L	18537786	18537813	roo	5	9161	5.5	2.5	4.0	1.0	9188	chr3L	18528625	intergenic	not near genes	chr3L	18533219	intergenic	not near genes	chr3L	18537813	intergenic	not near genes	chr3L_5_18530001	chr3L_18530001	RAL-810
1265	chr3L	18593950	18593977	chr3L	18595930	18595957	Doc	9	1980	2.0	1.5	1.8	3.2	2007	chr3L	18593950	intergenic	term -	chr3L	18594954	intergenic	not near genes	chr3L	18595957	intergenic	CR45389 +	chr3L_9_18590001	chr3L_18590001	RAL-810
1267	chr3L	18710775	18710781	chr3L	18718726	18718733	Stalker2	4	7952	4.0	5.0	4.5	0.7	7958	chr3L	18710775	intergenic	not near genes	chr3L	18714754	intergenic	not near genes	chr3L	18718733	intergenic	not near genes	chr3L_4_18710001	chr3L_18710001	RAL-810
1270	chr3L	18772415	18772438	chr3L	18781096	18781119	roo	6	8681	2.0	6.0	4.0	1.2	8704	chr3L	18772415	intron	ftz-f1 -	chr3L	18776767	intron	ftz-f1 -	chr3L	18781119	intron	ftz-f1 -	chr3L_6_18775001	chr3L_18775001	RAL-810
1272	chr3L	18833778	18833812	chr3L	18834941	18834976	1360	6	1163	3.5	1.0	2.2	1.9	1198	chr3L	18833778	intron	Indy -	chr3L	18834377	intron	Indy -	chr3L	18834976	intron	Indy -	chr3L_6_18830001	chr3L_18830001	RAL-810
1279	chr3L	19008845	19008870	chr3L	19009183	19009207	jockey	7	338	6.0	5.5	5.8	1.0	362	chr3L	19008845	intron	nkd -	chr3L	19009026	intron	nkd -	chr3L	19009207	intron	nkd -	chr3L_7_19005001	chr3L_19005001	RAL-810
1282	chr3L	19115633	19115672	chr3L	19115813	19115848	BS	10	179	1.5	1.5	1.5	4.0	215	chr3L	19115633	intron	CG14082 -	chr3L	19115740	intron	CG14082 -	chr3L	19115848	intron	CG14082 -	chr3L_10_19115001	chr3L_19115001	RAL-810
1283	chr3L	19117046	19117072	chr3L	19124493	19124519	mdg1	12	7446	1.0	3.5	2.2	3.8	7473	chr3L	19117046	intron	CG14082 -	chr3L	19120782	intron	CG14082 -	chr3L	19124519	intron	CG14082 -	chr3L_12_19120001	chr3L_19120001	RAL-810
1285	chr3L	19208059	19208091	chr3L	19209433	19209465	Doc	8	1374	2.0	0.0	1.0	4.0	1406	chr3L	19208059	intron	fz2 -	chr3L	19208762	intron	fz2 -	chr3L	19209465	intron	fz2 -	chr3L_8_19205001	chr3L_19205001	RAL-810
1294	chr3L	19820305	19820319	chr3L	19827853	19827868	412	5	7549	4.0	2.5	3.2	1.2	7563	chr3L	19820305	intron	Deaf1 +	chr3L	19824086	intron	Deaf1 +	chr3L	19827868	intron	Deaf1 +	chr3L_5_19820001	chr3L_19820001	RAL-810
1295	chr3L	19848506	19848532	chr3L	19857696	19857721	roo	11	9189	2.0	2.0	2.0	3.7	9215	chr3L	19848506	intron	Papss +	chr3L	19853114	intron	Papss +	chr3L	19857721	intron	Papss +	chr3L_11_19850001	chr3L_19850001	RAL-810
1296	chr3L	19861821	19861850	chr3L	19863609	19863638	S-element	11	1787	3.5	4.5	4.0	2.2	1817	chr3L	19861821	5` UTR	CR45433 +	chr3L	19862730	intergenic	not near genes	chr3L	19863638	intergenic	not near genes	chr3L_11_19860001	chr3L_19860001	RAL-810
1302	chr3L	20113667	20113691	chr3L	20122924	20122948	roo	6	9257	4.5	2.5	3.5	1.3	9281	chr3L	20113667	intergenic	not near genes	chr3L	20118308	intergenic	not near genes	chr3L	20122948	intergenic	not near genes	chr3L_6_20115001	chr3L_20115001	RAL-810
1311	chr3L	20257337	20257358	chr3L	20258457	20258478	pogo	4	1120	2.5	1.0	1.8	1.4	1141	chr3L	20257337	intron	rdgC +	chr3L	20257908	intron	rdgC +	chr3L	20258478	intron	rdgC +	chr3L_4_20255001	chr3L_20255001	RAL-810
1315	chr3L	20476752	20476776	chr3L	20484351	20484375	springer	8	7599	4.5	4.0	4.2	1.5	7623	chr3L	20476752	3` UTR	isoQC +	chr3L	20480564	intergenic	not near genes	chr3L	20484375	3` UTR	ZnT77C -	chr3L_8_20480001	chr3L_20480001	RAL-810
1323	chr3L	20821294	20821309	chr3L	20824763	20824778	NOF	6	3469	4.0	5.0	4.5	1.1	3484	chr3L	20821294	intron	Pka-R1 +	chr3L	20823036	intron	Pka-R1 +	chr3L	20824778	intron	Pka-R1 +	chr3L_6_20820001	chr3L_20820001	RAL-810
1326	chr3L	21151864	21151890	chr3L	21156948	21156973	flea	6	5083	3.0	1.0	2.0	2.0	5109	chr3L	21151864	intron	Ac78C -	chr3L	21154418	intron	Ac78C -	chr3L	21156973	intron	Ac78C -	chr3L_6_21150001	chr3L_21150001	RAL-810
1328	chr3L	21306150	21306181	chr3L	21315309	21315340	roo	15	9158	3.5	1.0	2.2	4.7	9190	chr3L	21306150	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310745	intron	Pc -	chr3L	21315340	3` UTR	Pc -	chr3L_15_21310001	chr3L_21310001	RAL-810
1338	chr3L	21749320	21749350	chr3L	21754480	21754510	Doc	4	5154	2.0	2.0	2.0	1.3	5190	chr3L	21749320	intron	Syn1 -	chr3L	21751915	intron	Syn1 -	chr3L	21754510	intron	Syn1 -	chr3L_4_21750001	chr3L_21750001	RAL-810
1352	chr3L	22099673	22099708	chr3L	22105859	22105891	3S18	11	6185	2.0	2.0	2.0	3.7	6218	chr3L	22099673	intergenic	not near genes	chr3L	22102782	intergenic	not near genes	chr3L	22105891	intergenic	not near genes	chr3L_11_22100001	chr3L_22100001	RAL-810
1358	chr3L	22555769	22555799	chr3L	22563239	22563252	blood	5	7463	2.5	2.5	2.5	1.4	7483	chr3L	22555769	intergenic	not near genes	chr3L	22559510	intergenic	not near genes	chr3L	22563252	intergenic	not near genes	chr3L_5_22555001	chr3L_22555001	RAL-810
1360	chr3L	22617191	22617209	chr3L	22624643	22624661	blood	4	7452	3.0	3.0	3.0	1.0	7470	chr3L	22617191	intron	CG14459 -	chr3L	22620926	intron	CG14459 -	chr3L	22624661	intron	CG14459 -	chr3L_4_22620001	chr3L_22620001	RAL-810
1363	chr3L	22761389	22761419	chr3L	22766822	22766853	Ivk	15	5434	4.0	2.5	3.2	3.6	5464	chr3L	22761389	intron	SPoCk +	chr3L	22764121	intron	SPoCk +	chr3L	22766853	intron	SPoCk +	chr3L_15_22760001	chr3L_22760001	RAL-810
1366	chr3L	22865980	22866011	chr3L	22867113	22867144	Doc	10	1133	3.5	2.0	2.8	2.6	1164	chr3L	22865980	intron	CG33170 +	chr3L	22866562	intron	CG33170 +	chr3L	22867144	intron	CG33170 +	chr3L_10_22865001	chr3L_22865001	RAL-810
1370	chr3L	22989862	22989888	chr3L	22996836	22996862	297	6	6974	1.0	5.0	3.0	1.5	7000	chr3L	22989862	intergenic	not near genes	chr3L	22993362	intergenic	not near genes	chr3L	22996862	intergenic	not near genes	chr3L_6_22990001	chr3L_22990001	RAL-810
1374	chr3L	24012403	24012439	chr3L	24020744	24020780	roo	13	8341	3.0	2.0	2.5	3.7	8377	chr3L	24012403	intergenic	not near genes	chr3L	24016592	intergenic	not near genes	chr3L	24020780	intergenic	not near genes	chr3L_13_24015001	chr3L_24015001	RAL-810
1384	chr3R	4105041	4105067	chr3R	4110244	4110271	copia	6	5204	2.5	2.5	2.5	1.7	5230	chr3R	4105041	intergenic	not near genes	chr3R	4107656	intergenic	not near genes	chr3R	4110271	intergenic	not near genes	chr3R_6_4105001	chr3R_4105001	RAL-810
1386	chr3R	4206070	4206102	chr3R	4211645	4211677	mdg3	7	5575	3.5	5.0	4.2	1.3	5607	chr3R	4206070	intron	CG14636 -	chr3R	4208874	intron	CG14636 -	chr3R	4211677	intron	CG14636 -	chr3R_7_4205001	chr3R_4205001	RAL-810
1388	chr3R	4366756	4366788	chr3R	4375139	4375171	roo	8	8383	1.5	5.0	3.2	1.9	8415	chr3R	4366756	3` UTR	CG1090 +	chr3R	4370964	intergenic	not near genes	chr3R	4375171	5` UTR	CR44922 +	chr3R_8_4370001	chr3R_4370001	RAL-810
1389	chr3R	4408411	4408442	chr3R	4412715	4412746	Juan	10	4304	2.0	4.0	3.0	2.5	4335	chr3R	4408411	intron	CG32944 -	chr3R	4410578	intron	CG32944 -	chr3R	4412746	intron	CG32944 -	chr3R_10_4410001	chr3R_4410001	RAL-810
1392	chr3R	4753241	4753257	chr3R	4757543	4757559	F-element	5	4302	4.0	3.0	3.5	1.1	4318	chr3R	4753241	intron,intron	atms +,CG44098 -	chr3R	4755400	intron,intron	atms +,CG44098 -	chr3R	4757559	intron,exon	atms +,CG44098 -	chr3R_5_4755001	chr3R_4755001	RAL-810
1395	chr3R	4887477	4887490	chr3R	4894854	4894867	rover	5	7377	1.0	2.0	1.5	2.0	7390	chr3R	4887477	intergenic	not near genes	chr3R	4891172	intergenic	not near genes	chr3R	4894867	intergenic	not near genes	chr3R_5_4890001	chr3R_4890001	RAL-810
1400	chr3R	5045846	5045871	chr3R	5052946	5052973	HMS-Beagle	5	7102	6.5	2.0	4.2	1.0	7127	chr3R	5045846	intron	CR43635 -	chr3R	5049410	intergenic	not near genes	chr3R	5052973	intergenic	CR45588 -	chr3R_5_5045001	chr3R_5045001	RAL-810
1401	chr3R	5067979	5068012	chr3R	5073496	5073529	mdg3	17	5517	4.0	1.0	2.5	4.9	5550	chr3R	5067979	intergenic	not near genes	chr3R	5070754	intergenic	not near genes	chr3R	5073529	intergenic	not near genes	chr3R_17_5070001	chr3R_5070001	RAL-810
1405	chr3R	5338402	5338427	chr3R	5343579	5343604	Rt1c	9	5177	2.5	5.5	4.0	1.8	5202	chr3R	5338402	intron	mtd -	chr3R	5341003	intron	mtd -	chr3R	5343604	intron	mtd -	chr3R_9_5340001	chr3R_5340001	RAL-810
1406	chr3R	5445959	5445994	chr3R	5452419	5452454	Burdock	12	6460	1.5	2.5	2.0	4.0	6495	chr3R	5445959	intron	CG14669 +	chr3R	5449206	intron	CG14669 +	chr3R	5452454	intron	CG14669 +	chr3R_12_5445001	chr3R_5445001	RAL-810
1408	chr3R	5746016	5746042	chr3R	5746257	5746283	pogo	10	241	4.5	4.5	4.5	1.8	267	chr3R	5746016	3` UTR	Madm +	chr3R	5746150	3` UTR	Madm +	chr3R	5746283	3` UTR	Madm +	chr3R_10_5745001	chr3R_5745001	RAL-810
1409	chr3R	5747010	5747044	chr3R	5753201	5753235	diver	12	6191	4.0	3.0	3.5	2.7	6225	chr3R	5747010	intergenic	Madm +	chr3R	5750122	intergenic	not near genes	chr3R	5753235	intergenic	CG2091 -	chr3R_12_5750001	chr3R_5750001	RAL-810
1411	chr3R	5809121	5809145	chr3R	5809362	5809386	pogo	5	240	1.0	3.5	2.2	1.6	265	chr3R	5809121	3` UTR	CG11000 +	chr3R	5809254	3` UTR	CG11000 +	chr3R	5809386	3` UTR	CG11000 +	chr3R_5_5805001	chr3R_5805001	RAL-810
1412	chr3R	5822380	5822412	chr3R	5823547	5823579	1360	6	1166	3.5	1.5	2.5	1.7	1199	chr3R	5822380	3` UTR	CG2023 -	chr3R	5822980	3` UTR	CG2023 -	chr3R	5823579	3` UTR	CG2023 -	chr3R_6_5820001	chr3R_5820001	RAL-810
1415	chr3R	5927561	5927588	chr3R	5927800	5927823	pogo	11	239	1.5	1.0	1.2	5.0	262	chr3R	5927561	intron	CG34113 -	chr3R	5927692	intron	CG34113 -	chr3R	5927823	intron	CG34113 -	chr3R_11_5925001	chr3R_5925001	RAL-810
1419	chr3R	6158508	6158535	chr3R	6167091	6167118	Tirant	5	8583	3.0	2.0	2.5	1.4	8610	chr3R	6158508	intergenic	not near genes	chr3R	6162813	intergenic	not near genes	chr3R	6167118	intergenic	CG1077 +	chr3R_5_6160001	chr3R_6160001	RAL-810
1421	chr3R	6175175	6175203	chr3R	6182447	6182475	HMS-Beagle2	5	7271	3.0	4.5	3.8	1.0	7300	chr3R	6175175	intergenic	Osi1 +	chr3R	6178825	intron	CR45194 +	chr3R	6182475	intergenic	CR45194 +	chr3R_5_6175001	chr3R_6175001	RAL-810
1423	chr3R	6510027	6510055	chr3R	6515108	6515136	jockey	15	5081	4.5	5.0	4.8	2.6	5109	chr3R	6510027	intergenic	not near genes	chr3R	6512582	intergenic	not near genes	chr3R	6515136	intergenic	not near genes	chr3R_15_6510001	chr3R_6510001	RAL-810
1426	chr3R	6737501	6737529	chr3R	6739288	6739316	Doc	8	1786	2.5	1.5	2.0	2.7	1815	chr3R	6737501	intron	pb -	chr3R	6738408	intron	pb -	chr3R	6739316	intron	pb -	chr3R_8_6735001	chr3R_6735001	RAL-810
1442	chr3R	7694576	7694610	chr3R	7713637	7713671	invader3	10	19061	2.5	2.0	2.2	3.1	19095	chr3R	7694576	3` UTR	Nlg1 +	chr3R	7704124	intergenic	not near genes	chr3R	7713671	intergenic	not near genes	chr3R_10_7700001	chr3R_7700001	RAL-810
1443	chr3R	7729467	7729499	chr3R	7737403	7737437	Stalker2	13	7937	2.0	2.5	2.2	4.1	7970	chr3R	7729467	intergenic	not near genes	chr3R	7733452	intergenic	not near genes	chr3R	7737437	intergenic	not near genes	chr3R_13_7730001	chr3R_7730001	RAL-810
1445	chr3R	7849643	7849675	chr3R	7850810	7850842	1360	12	1167	1.0	6.0	3.5	2.7	1199	chr3R	7849643	intron	CG34384 +	chr3R	7850242	intron	CG34384 +	chr3R	7850842	intron	CG34384 +	chr3R_12_7850001	chr3R_7850001	RAL-810
1447	chr3R	7973315	7973342	chr3R	7974377	7974403	1360	5	1062	3.5	2.0	2.8	1.3	1088	chr3R	7973315	intergenic	not near genes	chr3R	7973859	intergenic	not near genes	chr3R	7974403	intergenic	CD98hc -	chr3R_5_7970001	chr3R_7970001	RAL-810
1451	chr3R	8094408	8094436	chr3R	8099713	8099741	Transpac	7	5305	2.5	5.0	3.8	1.5	5333	chr3R	8094408	intron	CG7900 +	chr3R	8097074	intron	CG7900 +	chr3R	8099741	intron	CG7900 +	chr3R_7_8095001	chr3R_8095001	RAL-810
1452	chr3R	8101763	8101792	chr3R	8104847	8104875	G2	7	3084	4.5	4.0	4.2	1.3	3112	chr3R	8101763	exon	CG7900 +	chr3R	8103319	intron	CG7900 +	chr3R	8104875	3` UTR	CG7900 +	chr3R_7_8100001	chr3R_8100001	RAL-810
1454	chr3R	8207556	8207585	chr3R	8208398	8208429	F-element	5	844	2.0	2.0	2.0	1.7	873	chr3R	8207556	intergenic	not near genes	chr3R	8207992	intergenic	not near genes	chr3R	8208429	intergenic	not near genes	chr3R_5_8205001	chr3R_8205001	RAL-810
1456	chr3R	8403010	8403036	chr3R	8412175	8412202	roo	7	9166	1.0	3.5	2.2	2.2	9192	chr3R	8403010	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412202	intron	CG45263 -	chr3R_7_8405001	chr3R_8405001	RAL-810
1457	chr3R	8570476	8570510	chr3R	8575112	8575146	HMS-Beagle	5	4636	0.0	5.5	2.8	1.3	4670	chr3R	8570476	intergenic	not near genes	chr3R	8572811	intergenic	not near genes	chr3R	8575146	intergenic	not near genes	chr3R_5_8570001	chr3R_8570001	RAL-810
1458	chr3R	8601771	8601795	chr3R	8610920	8610947	roo	9	9152	3.0	1.5	2.2	2.8	9176	chr3R	8601771	intron	5-HT2B +	chr3R	8606359	intron	5-HT2B +	chr3R	8610947	intron	5-HT2B +	chr3R_9_8605001	chr3R_8605001	RAL-810
1460	chr3R	8707361	8707383	chr3R	8709802	8709823	jockey	6	2441	2.0	3.0	2.5	1.7	2462	chr3R	8707361	intergenic	not near genes	chr3R	8708592	intergenic	not near genes	chr3R	8709823	intergenic	not near genes	chr3R_6_8705001	chr3R_8705001	RAL-810
1468	chr3R	9319586	9319609	chr3R	9320021	9320044	jockey	8	435	2.5	6.0	4.2	1.5	458	chr3R	9319586	intron	CG8861 -	chr3R	9319815	intron	CG8861 -	chr3R	9320044	intron	CG8861 -	chr3R_8_9315001	chr3R_9315001	RAL-810
1470	chr3R	9361818	9361844	chr3R	9362059	9362085	pogo	11	241	3.5	2.0	2.8	2.9	267	chr3R	9361818	3` UTR	CG45050 +	chr3R	9361952	3` UTR	CG45050 +	chr3R	9362085	3` UTR	CG45050 +	chr3R_11_9360001	chr3R_9360001	RAL-810
1479	chr3R	10231795	10231814	chr3R	10237372	10237391	mdg3	4	5577	1.0	3.0	2.0	1.3	5596	chr3R	10231795	intron	CG42795 +	chr3R	10234593	intron	CG42795 +	chr3R	10237391	intron	CG42795 +	chr3R_4_10230001	chr3R_10230001	RAL-810
1480	chr3R	10255376	10255382	chr3R	10260816	10260822	I-element	4	5440	6.0	4.0	5.0	0.7	5446	chr3R	10255376	exon	Sirt6 -	chr3R	10258099	intron	Sirt6 -	chr3R	10260822	exon	Sirt6 -	chr3R_4_10255001	chr3R_10255001	RAL-810
1486	chr3R	10804172	10804191	chr3R	10811702	10811723	17.6	7	7532	3.5	4.5	4.0	1.4	7551	chr3R	10804172	intergenic	CG14692 -	chr3R	10807948	intergenic	not near genes	chr3R	10811723	3` UTR	CG14693 -	chr3R_7_10805001	chr3R_10805001	RAL-810
1497	chr3R	11379234	11379267	chr3R	11388389	11388422	roo	8	9155	4.0	2.0	3.0	2.0	9188	chr3R	11379234	intron	pros +	chr3R	11383828	intron	pros +	chr3R	11388422	intron	pros +	chr3R_8_11380001	chr3R_11380001	RAL-810
1506	chr3R	11841060	11841094	chr3R	11846250	11846284	BS	4	5186	3.0	2.5	2.8	1.1	5224	chr3R	11841060	intron	CG6959 -	chr3R	11843672	intron	CG6959 -	chr3R	11846284	intron	CG6959 -	chr3R_4_11840001	chr3R_11840001	RAL-810
1513	chr3R	12022883	12022913	chr3R	12025060	12025090	pogo	6	2177	1.5	1.5	1.5	2.4	2207	chr3R	12022883	intergenic	not near genes	chr3R	12023986	intergenic	not near genes	chr3R	12025090	intergenic	not near genes	chr3R_6_12020001	chr3R_12020001	RAL-810
1525	chr3R	12864561	12864595	chr3R	12865046	12865080	roo	4	485	2.5	1.5	2.0	1.3	519	chr3R	12864561	intergenic	not near genes	chr3R	12864820	intergenic	not near genes	chr3R	12865080	intergenic	not near genes	chr3R_4_12860001	chr3R_12860001	RAL-810
1531	chr3R	12920159	12920178	chr3R	12925362	12925381	copia	5	5203	2.0	1.5	1.8	1.8	5222	chr3R	12920159	intron	beat-Vb +	chr3R	12922770	intron	beat-Vb +	chr3R	12925381	intron	beat-Vb +	chr3R_5_12920001	chr3R_12920001	RAL-810
1538	chr3R	13143032	13143065	chr3R	13148609	13148641	mdg3	9	5571	1.5	3.0	2.2	2.8	5609	chr3R	13143032	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145836	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148641	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_9_13145001	chr3R_13145001	RAL-810
1541	chr3R	13314099	13314127	chr3R	13318887	13318915	Doc	4	4787	5.0	3.5	4.2	0.8	4816	chr3R	13314099	intergenic	not near genes	chr3R	13316507	intergenic	not near genes	chr3R	13318915	intergenic	CG45080 -	chr3R_4_13315001	chr3R_13315001	RAL-810
1558	chr3R	14180813	14180837	chr3R	14185575	14185602	F-element	9	4765	3.5	3.0	3.2	2.1	4789	chr3R	14180813	intron	Dop1R1 -	chr3R	14183208	intron	Dop1R1 -	chr3R	14185602	intron	Dop1R1 -	chr3R_9_14180001	chr3R_14180001	RAL-810
1569	chr3R	15079807	15079837	chr3R	15080048	15080078	pogo	9	241	3.5	0.5	2.0	3.0	271	chr3R	15079807	3` UTR	CG6966 -	chr3R	15079942	3` UTR	CG6966 -	chr3R	15080078	3` UTR	CG6966 -	chr3R_9_15075001	chr3R_15075001	RAL-810
1570	chr3R	15102496	15102525	chr3R	15109751	15109780	412	7	7258	3.0	4.5	3.8	1.5	7284	chr3R	15102496	intron	CG42788 -	chr3R	15106138	intron	CG42788 -	chr3R	15109780	intron	CG42788 -	chr3R_7_15105001	chr3R_15105001	RAL-810
1572	chr3R	15132062	15132081	chr3R	15135121	15135141	Juan	8	3060	5.0	12.0	8.5	0.8	3079	chr3R	15132062	intergenic	CG42788 -	chr3R	15133602	intergenic	not near genes	chr3R	15135141	3` UTR	CG6912 -	chr3R_8_15130001	chr3R_15130001	RAL-810
1574	chr3R	15162549	15162574	chr3R	15167316	15167340	F-element	10	4767	4.5	2.5	3.5	2.2	4791	chr3R	15162549	intron	Gyc88E +	chr3R	15164944	intron	Gyc88E +	chr3R	15167340	intron	Gyc88E +	chr3R_10_15160001	chr3R_15160001	RAL-810
1582	chr3R	15601166	15601195	chr3R	15608688	15608700	412	10	7519	2.5	2.0	2.2	3.1	7534	chr3R	15601166	intergenic	not near genes	chr3R	15604933	intergenic	not near genes	chr3R	15608700	intergenic	not near genes	chr3R_10_15600001	chr3R_15600001	RAL-810
1594	chr3R	16189411	16189443	chr3R	16189814	16189846	invader4	6	403	5.0	0.5	2.8	1.6	435	chr3R	16189411	intron	sra +	chr3R	16189628	intron	sra +	chr3R	16189846	intron	sra +	chr3R_6_16185001	chr3R_16185001	RAL-810
1601	chr3R	16756328	16756344	chr3R	16762517	16762535	diver	5	6188	2.0	3.5	2.8	1.3	6207	chr3R	16756328	intron	bxd -	chr3R	16759432	intron	bxd -	chr3R	16762535	intron	bxd -	chr3R_5_16755001	chr3R_16755001	RAL-810
1611	chr3R	17294668	17294701	chr3R	17295096	17295129	BS	8	425	3.0	0.5	1.8	2.9	461	chr3R	17294668	intergenic	not near genes	chr3R	17294898	intergenic	not near genes	chr3R	17295129	intergenic	not near genes	chr3R_8_17290001	chr3R_17290001	RAL-810
1613	chr3R	17346691	17346718	chr3R	17348254	17348281	F-element	8	1563	5.5	3.0	4.2	1.5	1590	chr3R	17346691	intron	beat-IIa -	chr3R	17347486	intron	beat-IIa -	chr3R	17348281	intron	beat-IIa -	chr3R_8_17345001	chr3R_17345001	RAL-810
1618	chr3R	17591286	17591312	chr3R	17591722	17591741	F-element	8	434	4.5	2.0	3.2	1.9	455	chr3R	17591286	intergenic	not near genes	chr3R	17591514	intergenic	not near genes	chr3R	17591741	intergenic	not near genes	chr3R_8_17590001	chr3R_17590001	RAL-810
1619	chr3R	17591314	17591323	chr3R	17591721	17591759	F-element	5	424	4.0	2.0	3.0	1.2	445	chr3R	17591314	intergenic	not near genes	chr3R	17591536	intergenic	not near genes	chr3R	17591759	intergenic	not near genes	chr3R_5_17590001	chr3R_17590001	RAL-810
1620	chr3R	17638315	17638330	chr3R	17638801	17638816	roo	8	486	0.0	0.5	0.2	6.7	501	chr3R	17638315	intron	CG43175 +	chr3R	17638566	intron	CG43175 +	chr3R	17638816	intron,intron	CG43175 +,CR45222 +	chr3R_8_17635001	chr3R_17635001	RAL-810
1622	chr3R	17657652	17657662	chr3R	17657803	17657813	INE-1	6	151	0.0	5.0	2.5	1.7	161	chr3R	17657652	intron	CG14322 +	chr3R	17657732	intron	CG14322 +	chr3R	17657813	intron	CG14322 +	chr3R_6_17655001	chr3R_17655001	RAL-810
1630	chr3R	17925852	17925889	chr3R	17927318	17927356	hobo	8	1464	1.5	2.5	2.0	2.7	1504	chr3R	17925852	intron	cpo +	chr3R	17926604	intron	cpo +	chr3R	17927356	intron	cpo +	chr3R_8_17925001	chr3R_17925001	RAL-810
1632	chr3R	18061582	18061608	chr3R	18063149	18063176	F-element	9	1567	4.5	1.0	2.8	2.4	1594	chr3R	18061582	intergenic	not near genes	chr3R	18062379	intergenic	not near genes	chr3R	18063176	intergenic	not near genes	chr3R_9_18060001	chr3R_18060001	RAL-810
1634	chr3R	18331783	18331796	chr3R	18333277	18333277	hopper2	5	1491	8.0	6.5	7.2	0.6	1494	chr3R	18331783	3` UTR	CG15803 -	chr3R	18332530	intron	CG15803 -	chr3R	18333277	3` UTR	CG15803 -	chr3R_5_18330001	chr3R_18330001	RAL-810
1639	chr3R	18606501	18606532	chr3R	18610733	18610764	F-element	12	4232	2.5	2.0	2.2	3.8	4263	chr3R	18606501	intron,intron	qin +,CG14304 -	chr3R	18608632	intron,intron	qin +,CG14304 -	chr3R	18610764	intron,intron	qin +,CG14304 -	chr3R_12_18605001	chr3R_18605001	RAL-810
1651	chr3R	19193002	19193012	chr3R	19197279	19197316	F-element	5	4294	0.0	1.0	0.5	3.3	4314	chr3R	19193002	intron	CG31475 +	chr3R	19195159	intron	CG31475 +	chr3R	19197316	intron	CG31475 +	chr3R_5_19195001	chr3R_19195001	RAL-810
1669	chr3R	20109545	20109569	chr3R	20114751	20114775	copia	9	5206	1.0	5.0	3.0	2.2	5230	chr3R	20109545	intergenic	not near genes	chr3R	20112160	intergenic	not near genes	chr3R	20114775	intergenic	CG10887 +	chr3R_9_20110001	chr3R_20110001	RAL-810
1672	chr3R	20156693	20156723	chr3R	20165863	20165893	roo	6	9170	2.5	3.5	3.0	1.5	9200	chr3R	20156693	intergenic	not near genes	chr3R	20161293	intergenic	not near genes	chr3R	20165893	intergenic	not near genes	chr3R_6_20160001	chr3R_20160001	RAL-810
1676	chr3R	20245278	20245302	chr3R	20248888	20248912	F-element	4	3610	3.0	3.0	3.0	1.0	3634	chr3R	20245278	3` UTR	Nlg4 +	chr3R	20247095	intergenic	not near genes	chr3R	20248912	intergenic	not near genes	chr3R_4_20245001	chr3R_20245001	RAL-810
1678	chr3R	20266516	20266545	chr3R	20272987	20273015	Burdock	10	6471	3.5	3.5	3.5	2.2	6499	chr3R	20266516	intron	cic +	chr3R	20269766	intron	cic +	chr3R	20273015	intron	cic +	chr3R_10_20265001	chr3R_20265001	RAL-810
1683	chr3R	20330996	20331020	chr3R	20331482	20331506	roo	8	486	3.5	5.0	4.2	1.5	510	chr3R	20330996	intergenic	Sirt2 +	chr3R	20331251	intergenic	Sirt2 +	chr3R	20331506	intergenic	not near genes	chr3R_8_20330001	chr3R_20330001	RAL-810
1688	chr3R	20513009	20513033	chr3R	20515712	20515736	opus	8	2703	4.5	3.0	3.8	1.7	2727	chr3R	20513009	intergenic	not near genes	chr3R	20514372	intergenic	not near genes	chr3R	20515736	intergenic	not near genes	chr3R_8_20510001	chr3R_20510001	RAL-810
1699	chr3R	20854489	20854513	chr3R	20859279	20859302	Doc	5	4789	4.0	3.0	3.5	1.1	4813	chr3R	20854489	intron	Ir93a -	chr3R	20856896	intron	Ir93a -	chr3R	20859302	exon	Ir93a -	chr3R_5_20855001	chr3R_20855001	RAL-810
1723	chr3R	21761129	21761151	chr3R	21768519	21768527	mdg1	5	7388	3.5	4.5	4.0	1.0	7398	chr3R	21761129	exon	CG42335 +	chr3R	21764828	intron	CG42335 +	chr3R	21768527	exon	CG42335 +	chr3R_5_21760001	chr3R_21760001	RAL-810
1737	chr3R	22234689	22234709	chr3R	22236008	22236028	pogo	6	1316	3.5	3.5	3.5	1.3	1339	chr3R	22234689	intron	SKIP +	chr3R	22235358	intron	SKIP +	chr3R	22236028	intron	SKIP +	chr3R_6_22235001	chr3R_22235001	RAL-810
1738	chr3R	22239490	22239522	chr3R	22248550	22248582	roo	10	9059	2.0	2.0	2.0	3.3	9092	chr3R	22239490	intron	SKIP +	chr3R	22244036	intron	SKIP +	chr3R	22248582	intron	SKIP +	chr3R_10_22240001	chr3R_22240001	RAL-810
1742	chr3R	22450544	22450578	chr3R	22453184	22453218	NOF	9	2639	5.0	2.0	3.5	2.0	2674	chr3R	22450544	intron	CG34376 +	chr3R	22451881	intron	CG34376 +	chr3R	22453218	intron	CG34376 +	chr3R_9_22450001	chr3R_22450001	RAL-810
1759	chr3R	23558409	23558428	chr3R	23560190	23560208	Bari1	7	1781	1.0	5.5	3.2	1.7	1799	chr3R	23558409	intron	beat-IV +	chr3R	23559308	intron	beat-IV +	chr3R	23560208	intron	beat-IV +	chr3R_7_23555001	chr3R_23555001	RAL-810
1762	chr3R	23835402	23835433	chr3R	23844552	23844583	roo	6	9150	2.0	2.5	2.2	1.9	9181	chr3R	23835402	intron	CG34355 +	chr3R	23839992	intron	CG34355 +	chr3R	23844583	intron	CG34355 +	chr3R_6_23835001	chr3R_23835001	RAL-810
1763	chr3R	24072091	24072109	chr3R	24072528	24072546	jockey	6	436	2.0	5.0	3.5	1.3	455	chr3R	24072091	intron	4EHP -	chr3R	24072318	intron	4EHP -	chr3R	24072546	intron	4EHP -	chr3R_6_24070001	chr3R_24070001	RAL-810
1764	chr3R	24076923	24076944	chr3R	24078390	24078411	hobo	7	1465	4.5	3.0	3.8	1.5	1488	chr3R	24076923	intron	4EHP -	chr3R	24077667	intron	4EHP -	chr3R	24078411	intron	4EHP -	chr3R_7_24075001	chr3R_24075001	RAL-810
1767	chr3R	24207222	24207243	chr3R	24212298	24212318	flea	6	5076	5.0	4.5	4.8	1.0	5096	chr3R	24207222	intron	twin -	chr3R	24209770	intron	twin -	chr3R	24212318	intron	twin -	chr3R_6_24205001	chr3R_24205001	RAL-810
1771	chr3R	24493274	24493303	chr3R	24493503	24493532	BS	11	228	4.5	2.0	3.2	2.6	258	chr3R	24493274	intergenic	not near genes	chr3R	24493403	intergenic	not near genes	chr3R	24493532	intergenic	not near genes	chr3R_11_24490001	chr3R_24490001	RAL-810
1776	chr3R	24730088	24730120	chr3R	24732466	24732491	Doc	8	2376	0.5	0.5	0.5	5.3	2403	chr3R	24730088	intron	tok +	chr3R	24731290	intron	tok +	chr3R	24732491	intron	tok +	chr3R_8_24730001	chr3R_24730001	RAL-810
1781	chr3R	24927123	24927162	chr3R	24931914	24931953	Doc	8	4789	3.0	0.5	1.8	2.9	4830	chr3R	24927123	intergenic	Trf4-2 +	chr3R	24929538	intergenic	not near genes	chr3R	24931953	intergenic	CG11771 +	chr3R_8_24925001	chr3R_24925001	RAL-810
1796	chr3R	25725828	25725861	chr3R	25734988	25735021	roo	9	9160	5.0	3.5	4.2	1.7	9193	chr3R	25725828	intron	LpR2 -	chr3R	25730424	intron	LpR2 -	chr3R	25735021	intron	LpR2 -	chr3R_9_25730001	chr3R_25730001	RAL-810
1802	chr3R	25832692	25832717	chr3R	25841874	25841899	roo	5	9182	1.5	2.0	1.8	1.8	9207	chr3R	25832692	exon	alpha4GT2 +	chr3R	25837296	intron	alpha4GT2 +	chr3R	25841899	exon	alpha4GT2 +	chr3R_5_25835001	chr3R_25835001	RAL-810
1818	chr3R	26376336	26376351	chr3R	26385494	26385511	roo	4	9159	3.5	0.5	2.0	1.3	9175	chr3R	26376336	intergenic	not near genes	chr3R	26380924	intergenic	not near genes	chr3R	26385511	intergenic	not near genes	chr3R_4_26380001	chr3R_26380001	RAL-810
1820	chr3R	26510506	26510535	chr3R	26519563	26519596	roo	12	9060	1.5	1.5	1.5	4.8	9090	chr3R	26510506	intron	plum -	chr3R	26515051	intron	plum -	chr3R	26519596	intron,5` UTR	plum -,CR45226 +	chr3R_12_26515001	chr3R_26515001	RAL-810
1824	chr3R	26642733	26642762	chr3R	26643126	26643156	jockey	4	394	2.5	2.0	2.2	1.2	423	chr3R	26642733	intergenic	not near genes	chr3R	26642944	intergenic	not near genes	chr3R	26643156	intergenic	not near genes	chr3R_4_26640001	chr3R_26640001	RAL-810
1831	chr3R	27007406	27007436	chr3R	27016541	27016563	roo	12	9132	2.5	3.5	3.0	3.0	9157	chr3R	27007406	intron	RYa-R +	chr3R	27011984	intron	RYa-R +	chr3R	27016563	intron	RYa-R +	chr3R_12_27010001	chr3R_27010001	RAL-810
1833	chr3R	27140515	27140542	chr3R	27148125	27148152	412	8	7610	3.5	2.5	3.0	2.0	7637	chr3R	27140515	intron	CG6051 -	chr3R	27144334	intron	CG6051 -	chr3R	27148152	intron	CG6051 -	chr3R_8_27140001	chr3R_27140001	RAL-810
1835	chr3R	27342791	27342825	chr3R	27351372	27351405	Tirant	12	8580	3.0	1.0	2.0	4.0	8614	chr3R	27342791	intron	CG42534 +	chr3R	27347098	intron	CG42534 +	chr3R	27351405	intron	CG42534 +	chr3R_12_27345001	chr3R_27345001	RAL-810
1837	chr3R	27521155	27521172	chr3R	27530364	27530381	roo	6	9209	4.0	1.0	2.5	1.7	9226	chr3R	27521155	intron	CG12885 +	chr3R	27525768	intron	CG12885 +	chr3R	27530381	intron	CG12885 +	chr3R_6_27525001	chr3R_27525001	RAL-810
1840	chr3R	27725573	27725603	chr3R	27731015	27731046	I-element	7	5443	1.5	3.5	2.5	2.0	5473	chr3R	27725573	intergenic	not near genes	chr3R	27728310	intergenic	not near genes	chr3R	27731046	intergenic	not near genes	chr3R_7_27725001	chr3R_27725001	RAL-810
1841	chr3R	27856759	27856791	chr3R	27858242	27858274	hopper2	12	1483	1.0	4.5	2.8	3.2	1515	chr3R	27856759	intron	CG34353 -	chr3R	27857516	intron	CG34353 -	chr3R	27858274	intron	CG34353 -	chr3R_12_27855001	chr3R_27855001	RAL-810
1842	chr3R	27862958	27862984	chr3R	27868262	27868285	Transpac	8	5302	3.0	2.0	2.5	2.3	5327	chr3R	27862958	intron	CG34353 -	chr3R	27865622	intron	CG34353 -	chr3R	27868285	intron	CG34353 -	chr3R_8_27865001	chr3R_27865001	RAL-810
1843	chr3R	27875707	27875730	chr3R	27882762	27882785	297	11	7055	0.5	4.5	2.5	3.1	7078	chr3R	27875707	intron	CG34353 -	chr3R	27879246	intron	CG34353 -	chr3R	27882785	intron	CG34353 -	chr3R_11_27875001	chr3R_27875001	RAL-810
1845	chr3R	28068492	28068528	chr3R	28073934	28073970	I-element	4	5442	2.0	2.0	2.0	1.3	5478	chr3R	28068492	intron	CG34362 +	chr3R	28071231	intron	CG34362 +	chr3R	28073970	intron	CG34362 +	chr3R_4_28070001	chr3R_28070001	RAL-810
1848	chr3R	28173663	28173670	chr3R	28181242	28181249	mdg1	4	7579	3.0	1.0	2.0	1.3	7586	chr3R	28173663	intron	CG34354 +	chr3R	28177456	intron	CG34354 +	chr3R	28181249	intron	CG34354 +	chr3R_4_28175001	chr3R_28175001	RAL-810
1850	chr3R	28253338	28253373	chr3R	28255848	28255883	jockey	6	2509	3.0	2.0	2.5	1.7	2545	chr3R	28253338	intergenic	not near genes	chr3R	28254610	intergenic	not near genes	chr3R	28255883	intergenic	not near genes	chr3R_6_28250001	chr3R_28250001	RAL-810
1852	chr3R	28302110	28302117	chr3R	28302551	28302555	jockey	5	441	2.5	2.5	2.5	1.4	445	chr3R	28302110	intergenic	not near genes	chr3R	28302332	intergenic	not near genes	chr3R	28302555	intergenic	not near genes	chr3R_5_28300001	chr3R_28300001	RAL-810
1863	chr3R	28792887	28792904	chr3R	28797967	28797999	jockey	5	5087	2.0	3.0	2.5	1.4	5112	chr3R	28792887	intergenic	not near genes	chr3R	28795443	intergenic	not near genes	chr3R	28797999	intergenic	not near genes	chr3R_5_28795001	chr3R_28795001	RAL-810
1874	chr3R	29079381	29079411	chr3R	29080753	29080783	NOF	11	1372	2.5	6.0	4.2	2.1	1402	chr3R	29079381	intron	CG11873 +	chr3R	29080082	intron	CG11873 +	chr3R	29080783	intron	CG11873 +	chr3R_11_29080001	chr3R_29080001	RAL-810
1878	chr3R	29319825	29319855	chr3R	29320144	29320174	jockey	11	319	5.0	5.0	5.0	1.8	349	chr3R	29319825	intergenic	Cnx99A -	chr3R	29320000	intergenic	Cnx99A -	chr3R	29320174	intergenic	not near genes	chr3R_11_29315001	chr3R_29315001	RAL-810
1881	chr3R	29406630	29406644	chr3R	29407916	29407930	jockey	5	1286	3.0	7.5	5.2	0.8	1300	chr3R	29406630	intron	Ptp99A +	chr3R	29407280	intron	Ptp99A +	chr3R	29407930	intron	Ptp99A +	chr3R_5_29405001	chr3R_29405001	RAL-810
1893	chr3R	29738263	29738301	chr3R	29739730	29739768	hobo	13	1466	3.0	2.0	2.5	3.7	1505	chr3R	29738263	intergenic	CG1969 +,CG7598 +	chr3R	29739016	intron	CG1969 +	chr3R	29739768	5` UTR	CG1969 +	chr3R_13_29735001	chr3R_29735001	RAL-810
1895	chr3R	29760362	29760392	chr3R	29761562	29761592	pogo	13	1201	5.0	2.5	3.8	2.7	1230	chr3R	29760362	intergenic	not near genes	chr3R	29760977	intergenic	not near genes	chr3R	29761592	intergenic	not near genes	chr3R_13_29760001	chr3R_29760001	RAL-810
1898	chr3R	29882022	29882046	chr3R	29891179	29891203	roo	11	9157	3.0	4.5	3.8	2.3	9181	chr3R	29882022	intron	CG31038 +	chr3R	29886612	intron	CG31038 +	chr3R	29891203	intron	CG31038 +	chr3R_11_29885001	chr3R_29885001	RAL-810
1910	chr3R	30238765	30238792	chr3R	30239929	30239956	1360	6	1164	3.0	5.0	4.0	1.2	1191	chr3R	30238765	intergenic	not near genes	chr3R	30239360	intergenic	not near genes	chr3R	30239956	intergenic	not near genes	chr3R_6_30235001	chr3R_30235001	RAL-810
1914	chr3R	30375537	30375571	chr3R	30383162	30383196	412	14	7624	1.5	3.0	2.2	4.4	7659	chr3R	30375537	intergenic	not near genes	chr3R	30379366	intergenic	not near genes	chr3R	30383196	intergenic	not near genes	chr3R_14_30375001	chr3R_30375001	RAL-810
1915	chr3R	30396217	30396247	chr3R	30404483	30404513	roo	10	8265	5.0	3.0	4.0	2.0	8296	chr3R	30396217	intergenic	not near genes	chr3R	30400365	intergenic	not near genes	chr3R	30404513	5` UTR	CR45570 +	chr3R_10_30400001	chr3R_30400001	RAL-810
1920	chr3R	30480474	30480511	chr3R	30482941	30482979	jockey	10	2468	0.0	5.5	2.8	2.6	2505	chr3R	30480474	intron	PH4alphaEFB +	chr3R	30481726	intron	PH4alphaEFB +	chr3R	30482979	intron	PH4alphaEFB +	chr3R_10_30480001	chr3R_30480001	RAL-810
1925	chr3R	30679520	30679545	chr3R	30686989	30687013	blood	4	7469	1.5	4.5	3.0	1.0	7493	chr3R	30679520	intergenic	not near genes	chr3R	30683266	intergenic	not near genes	chr3R	30687013	intergenic	not near genes	chr3R_4_30680001	chr3R_30680001	RAL-810
1930	chr3R	31074231	31074262	chr3R	31081829	31081860	springer	7	7598	2.0	2.0	2.0	2.3	7629	chr3R	31074231	intron	Sox100B +	chr3R	31078046	intron	Sox100B +	chr3R	31081860	intron	Sox100B +	chr3R_7_31075001	chr3R_31075001	RAL-810
1933	chr3R	31279373	31279408	chr3R	31285564	31285599	diver	6	6190	3.0	0.0	1.5	2.4	6226	chr3R	31279373	intergenic	not near genes	chr3R	31282486	intergenic	not near genes	chr3R	31285599	intergenic	not near genes	chr3R_6_31280001	chr3R_31280001	RAL-810
1940	chr3R	31691530	31691563	chr3R	31696296	31696326	Doc	10	4765	1.5	4.0	2.8	2.6	4796	chr3R	31691530	intergenic	not near genes	chr3R	31693928	intergenic	not near genes	chr3R	31696326	intergenic	not near genes	chr3R_10_31690001	chr3R_31690001	RAL-810
1944	chr3R	31997999	31998025	chr3R	32005469	32005489	blood	10	7469	1.0	3.5	2.2	3.1	7490	chr3R	31997999	intron	heph -	chr3R	32001744	intron	heph -	chr3R	32005489	intron	heph -	chr3R_10_32000001	chr3R_32000001	RAL-810
1945	chr4	76501	76518	chr4	81944	81961	I-element	4	5443	5.5	7.5	6.5	0.5	5460	chr4	76501	intron	pan +	chr4	79231	intron	pan +	chr4	81961	intron	pan +	chr4_4_75001	chr4_75001	RAL-810
1946	chr4	319987	320018	chr4	328163	328194	Stalker2	12	8176	3.0	3.0	3.0	3.0	8207	chr4	319987	3` UTR	CG32850 +	chr4	324090	intron	CG32850 +	chr4	328194	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_12_320001	chr4_320001	RAL-810
1948	chr4	671610	671636	chr4	680193	680217	Tirant	9	8583	0.5	2.5	1.5	3.6	8607	chr4	671610	intron	CG11360 +	chr4	675914	intron	CG11360 +	chr4	680217	intron	CG11360 +	chr4_9_675001	chr4_675001	RAL-810
1952	chrX	292430	292446	chrX	293089	293105	G3	7	659	2.5	22.5	12.5	0.5	675	chrX	292430	intron,intron	CG3777 +,CG13375 -	chrX	292768	intron,intron	CG3777 +,CG13375 -	chrX	293105	intron,intron	CG3777 +,CG13375 -	chrX_7_290001	chrX_290001	RAL-810
1953	chrX	295868	295882	chrX	303488	303501	412	5	7620	1.5	3.5	2.5	1.4	7633	chrX	295868	intron	CG3777 +	chrX	299684	intron	CG3777 +	chrX	303501	intron	CG3777 +	chrX_5_295001	chrX_295001	RAL-810
1954	chrX	318475	318499	chrX	323561	323585	flea	10	5086	3.5	2.0	2.8	2.6	5110	chrX	318475	intron,intron	CG3777 +,CG32816 -	chrX	321030	intron,intron	CG3777 +,CG32816 -	chrX	323585	intron,intron	CG3777 +,CG32816 -	chrX_10_320001	chrX_320001	RAL-810
1958	chrX	551427	551447	chrX	558989	559009	412	7	7560	3.5	2.0	2.8	1.8	7582	chrX	551427	intron	Appl +	chrX	555218	intron	Appl +	chrX	559009	intron	Appl +	chrX_7_555001	chrX_555001	RAL-810
1965	chrX	812275	812293	chrX	817898	817920	297	11	5626	3.5	1.0	2.2	3.4	5645	chrX	812275	intron	CG43867 -	chrX	815098	intron	CG43867 -	chrX	817920	intron	CG43867 -	chrX_11_815001	chrX_815001	RAL-810
1966	chrX	827602	827633	chrX	835394	835425	roo	8	7792	1.5	4.0	2.8	2.1	7823	chrX	827602	intron	CG43867 -	chrX	831514	intron	CG43867 -	chrX	835425	intron	CG43867 -	chrX_8_830001	chrX_830001	RAL-810
1967	chrX	906708	906720	chrX	908497	908509	S-element	5	1789	1.5	7.0	4.2	1.0	1801	chrX	906708	intron	CG43867 -	chrX	907608	intron	CG43867 -	chrX	908509	intron	CG43867 -	chrX_5_905001	chrX_905001	RAL-810
1972	chrX	1357778	1357805	chrX	1367948	1367975	Doc	12	10170	3.5	4.0	3.8	2.5	10197	chrX	1357778	intergenic	png -	chrX	1362876	intergenic	not near genes	chrX	1367975	intergenic	not near genes	chrX_12_1360001	chrX_1360001	RAL-810
1975	chrX	1518055	1518069	chrX	1523438	1523441	jockey	6	5394	2.0	3.5	2.8	1.6	5386	chrX	1518055	intergenic	inc +	chrX	1520748	intergenic	not near genes	chrX	1523441	intergenic	not near genes	chrX_6_1520001	chrX_1520001	RAL-810
1976	chrX	1627984	1628001	chrX	1635444	1635469	gtwin	4	7466	1.5	3.0	2.2	1.2	7485	chrX	1627984	intron,intron	Mur2B -,br +	chrX	1631726	intron,intron	Mur2B -,br +	chrX	1635469	intron,intron	Mur2B -,br +	chrX_4_1630001	chrX_1630001	RAL-810
1978	chrX	1930541	1930555	chrX	1938112	1938125	opus	10	7570	2.5	3.0	2.8	2.6	7584	chrX	1930541	intergenic	CG11596 +	chrX	1934333	intergenic	not near genes	chrX	1938125	3` UTR	CG3857 -	chrX_10_1930001	chrX_1930001	RAL-810
1981	chrX	2399838	2399870	chrX	2408191	2408223	roo	10	8347	0.0	3.0	1.5	4.0	8385	chrX	2399838	intergenic	not near genes	chrX	2404030	intergenic	not near genes	chrX	2408223	intergenic	not near genes	chrX_10_2400001	chrX_2400001	RAL-810
1986	chrX	2610385	2610402	chrX	2617502	2617508	HMS-Beagle	4	7114	5.5	2.0	3.8	0.8	7123	chrX	2610385	intergenic	CG8636 -	chrX	2613946	intergenic	not near genes	chrX	2617508	intergenic	Tsp3A -	chrX_4_2610001	chrX_2610001	RAL-810
1988	chrX	2844898	2844931	chrX	2852308	2852341	mdg1	7	7410	2.0	2.0	2.0	2.3	7443	chrX	2844898	intron	kirre +	chrX	2848620	intron	kirre +	chrX	2852341	intron	kirre +	chrX_7_2845001	chrX_2845001	RAL-810
1990	chrX	3058019	3058031	chrX	3058260	3058272	pogo	4	241	1.0	2.5	1.8	1.4	253	chrX	3058019	intron	kirre +	chrX	3058146	intron	kirre +	chrX	3058272	intron	kirre +	chrX_4_3055001	chrX_3055001	RAL-810
1991	chrX	3075637	3075648	chrX	3080944	3080955	Transpac	5	5307	0.0	0.0	0.0	5.0	5318	chrX	3075637	intron	kirre +	chrX	3078296	intron	kirre +	chrX	3080955	intron	kirre +	chrX_5_3075001	chrX_3075001	RAL-810
1994	chrX	3415023	3415042	chrX	3421208	3421226	3S18	5	6184	1.5	3.0	2.2	1.6	6203	chrX	3415023	intron,intron	CR44999 +,CG12535 -	chrX	3418124	intron,intron	CR44999 +,CG12535 -	chrX	3421226	intron,intron	CR44999 +,CG12535 -	chrX_5_3415001	chrX_3415001	RAL-810
1996	chrX	3493104	3493123	chrX	3502263	3502282	roo	4	9155	2.5	2.5	2.5	1.1	9178	chrX	3493104	intron,intron	CR44999 +,Gas8 -	chrX	3497693	intron,intron	CR44999 +,Gas8 -	chrX	3502282	intron,intron	CR44999 +,Gas8 -	chrX_4_3495001	chrX_3495001	RAL-810
1998	chrX	3597550	3597576	chrX	3619717	3619744	roo	5	22168	5.0	2.0	3.5	1.1	22194	chrX	3597550	intron	AstA-R1 +	chrX	3608647	intron	AstA-R1 +	chrX	3619744	intron	AstA-R1 +	chrX_5_3605001	chrX_3605001	RAL-810
2004	chrX	3726766	3726794	chrX	3730160	3730191	NOF	10	3396	3.0	0.0	1.5	4.0	3425	chrX	3726766	intron	tlk +	chrX	3728478	intron	tlk +	chrX	3730191	intron	tlk +	chrX_10_3725001	chrX_3725001	RAL-810
2005	chrX	3842325	3842349	chrX	3842566	3842590	pogo	8	241	1.5	3.5	2.5	2.3	265	chrX	3842325	intron	ec +	chrX	3842458	intron	ec +	chrX	3842590	intron	ec +	chrX_8_3840001	chrX_3840001	RAL-810
2008	chrX	3986861	3986892	chrX	3994494	3994525	412	11	7633	3.5	1.5	2.5	3.1	7664	chrX	3986861	intergenic	not near genes	chrX	3990693	intergenic	not near genes	chrX	3994525	intergenic	not near genes	chrX_11_3990001	chrX_3990001	RAL-810
2011	chrX	4157904	4157925	chrX	4164939	4164960	297	6	7035	3.0	4.5	3.8	1.2	7056	chrX	4157904	intron	Fas2 -	chrX	4161432	intron	Fas2 -	chrX	4164960	intron	Fas2 -	chrX_6_4160001	chrX_4160001	RAL-810
2017	chrX	4763259	4763283	chrX	4763747	4763770	Stalker4	9	487	1.5	1.5	1.5	3.6	511	chrX	4763259	intergenic	not near genes	chrX	4763514	intergenic	not near genes	chrX	4763770	intergenic	not near genes	chrX_9_4760001	chrX_4760001	RAL-810
2018	chrX	4792382	4792407	chrX	4792815	4792837	jockey	7	433	1.5	3.5	2.5	2.0	455	chrX	4792382	intergenic	not near genes	chrX	4792610	intergenic	not near genes	chrX	4792837	intergenic	not near genes	chrX_7_4790001	chrX_4790001	RAL-810
2022	chrX	4990043	4990077	chrX	4997257	4997291	roo	10	7214	3.0	1.0	2.0	3.3	7248	chrX	4990043	intron	CR44833 -	chrX	4993667	intron	CR44833 -	chrX	4997291	intron	CR44833 -	chrX_10_4990001	chrX_4990001	RAL-810
2026	chrX	5338708	5338719	chrX	5339961	5339972	jockey	5	1253	4.0	0.5	2.2	1.6	1264	chrX	5338708	intergenic	not near genes	chrX	5339340	intergenic	not near genes	chrX	5339972	intergenic	SK +	chrX_5_5335001	chrX_5335001	RAL-810
2031	chrX	5524849	5524868	chrX	5528712	5528731	412	9	3863	1.0	6.5	3.8	1.9	3882	chrX	5524849	intergenic	snoRNA:Psi28S-3342 -	chrX	5526790	intergenic	not near genes	chrX	5528731	intergenic	Vsx2 -	chrX_9_5525001	chrX_5525001	RAL-810
2032	chrX	5883809	5883840	chrX	5884050	5884081	pogo	10	241	1.5	3.5	2.5	2.9	272	chrX	5883809	intron	CR45668 -	chrX	5883945	intron	CR45668 -	chrX	5884081	intron	CR45668 -	chrX_10_5880001	chrX_5880001	RAL-810
2033	chrX	5884162	5884187	chrX	5884402	5884428	pogo	7	241	3.0	2.0	2.5	2.0	266	chrX	5884162	intron	CR45668 -	chrX	5884295	intron	CR45668 -	chrX	5884428	intron	CR45668 -	chrX_7_5880001	chrX_5880001	RAL-810
2035	chrX	6171581	6171614	chrX	6179014	6179047	Quasimodo	8	7431	1.5	5.0	3.2	1.9	7466	chrX	6171581	intron	Ca-alpha1T -	chrX	6175314	intron	Ca-alpha1T -	chrX	6179047	intron	Ca-alpha1T -	chrX_8_6175001	chrX_6175001	RAL-810
2043	chrX	6392882	6392900	chrX	6397646	6397665	Doc	5	4764	1.0	2.5	1.8	1.8	4783	chrX	6392882	intergenic	not near genes	chrX	6395274	intergenic	not near genes	chrX	6397665	intergenic	not near genes	chrX_5_6395001	chrX_6395001	RAL-810
2044	chrX	6445320	6445335	chrX	6451078	6451093	297	7	5758	2.5	3.5	3.0	1.8	5773	chrX	6445320	intron	CG42340 -	chrX	6448206	intron	CG42340 -	chrX	6451093	intron	CG42340 -	chrX_7_6445001	chrX_6445001	RAL-810
2058	chrX	7702899	7702930	chrX	7703338	7703369	jockey	7	439	1.5	3.0	2.2	2.2	470	chrX	7702899	intron	CHES-1-like -	chrX	7703134	intron	CHES-1-like -	chrX	7703369	intron	CHES-1-like -	chrX_7_7700001	chrX_7700001	RAL-810
2061	chrX	7845727	7845759	chrX	7847214	7847248	hopper2	5	1490	3.0	3.5	3.2	1.2	1521	chrX	7845727	intergenic	not near genes	chrX	7846488	intergenic	not near genes	chrX	7847248	intergenic	not near genes	chrX_5_7845001	chrX_7845001	RAL-810
2063	chrX	8031428	8031442	chrX	8035737	8035751	Juan	4	4309	3.5	3.5	3.5	0.9	4323	chrX	8031428	intergenic	not near genes	chrX	8033590	intergenic	not near genes	chrX	8035751	3` UTR	CG2233 -	chrX_4_8030001	chrX_8030001	RAL-810
2064	chrX	8031443	8031460	chrX	8035736	8035769	Juan	8	4307	2.5	3.5	3.0	2.0	4326	chrX	8031443	intergenic	not near genes	chrX	8033606	intergenic	not near genes	chrX	8035769	3` UTR	CG2233 -	chrX_8_8030001	chrX_8030001	RAL-810
2065	chrX	8364860	8364879	chrX	8365255	8365276	BS	6	397	0.0	3.0	1.5	2.4	416	chrX	8364860	intron	nAChRalpha3 -	chrX	8365068	intron	nAChRalpha3 -	chrX	8365276	intron	nAChRalpha3 -	chrX_6_8365001	chrX_8365001	RAL-810
2070	chrX	8922324	8922361	chrX	8922758	8922794	jockey	10	431	1.0	2.0	1.5	4.0	470	chrX	8922324	intron	rdgA +	chrX	8922559	intron	rdgA +	chrX	8922794	intron	rdgA +	chrX_10_8920001	chrX_8920001	RAL-810
2071	chrX	8948759	8948791	chrX	8956269	8956301	roo	7	7510	2.0	5.0	3.5	1.6	7542	chrX	8948759	intron	rdgA +	chrX	8952530	intron	rdgA +	chrX	8956301	intron	rdgA +	chrX_7_8950001	chrX_8950001	RAL-810
2075	chrX	9508145	9508164	chrX	9509663	9509682	jockey	4	1518	5.0	3.5	4.2	0.8	1537	chrX	9508145	intron	CG32700 -	chrX	9508914	intron	CG32700 -	chrX	9509682	intron	CG32700 -	chrX_4_9505001	chrX_9505001	RAL-810
2080	chrX	10138216	10138245	chrX	10145720	10145749	412	4	7504	1.5	4.5	3.0	1.0	7533	chrX	10138216	intron,intron	RhoU +,CR44894 -	chrX	10141982	intron,intron	RhoU +,CR44894 -	chrX	10145749	intron,intron	RhoU +,CR44894 -	chrX_4_10140001	chrX_10140001	RAL-810
2081	chrX	10267301	10267333	chrX	10276451	10276483	roo	6	9150	2.0	2.0	2.0	2.0	9182	chrX	10267301	3` UTR	alpha-Man-I -	chrX	10271892	intron	alpha-Man-I -	chrX	10276483	3` UTR	alpha-Man-I -	chrX_6_10270001	chrX_10270001	RAL-810
2082	chrX	10348809	10348827	chrX	10356374	10356382	springer	6	7563	2.5	2.0	2.2	1.9	7573	chrX	10348809	intergenic	snoRNA:U3:9B +	chrX	10352596	intergenic	not near genes	chrX	10356382	intergenic	l(1)G0289 -	chrX_6_10350001	chrX_10350001	RAL-810
2085	chrX	10550867	10550880	chrX	10552334	10552346	hobo	5	1466	4.0	1.5	2.8	1.3	1479	chrX	10550867	intron	spri -	chrX	10551606	intron	spri -	chrX	10552346	intron	spri -	chrX_5_10550001	chrX_10550001	RAL-810
2087	chrX	10686052	10686084	chrX	10691189	10691221	roo	6	5137	1.5	3.0	2.2	1.9	5169	chrX	10686052	intron	X11Lbeta +	chrX	10688636	intron	X11Lbeta +	chrX	10691221	intron	X11Lbeta +	chrX_6_10685001	chrX_10685001	RAL-810
2093	chrX	11096003	11096023	chrX	11103105	11103125	HMS-Beagle	4	7102	4.0	5.5	4.8	0.7	7122	chrX	11096003	intergenic	not near genes	chrX	11099564	intergenic	not near genes	chrX	11103125	intron	CG42249 +	chrX_4_11095001	chrX_11095001	RAL-810
2101	chrX	11312070	11312093	chrX	11319418	11319446	Stalker2	6	7350	4.0	4.0	4.0	1.2	7376	chrX	11312070	intergenic	not near genes	chrX	11315758	intergenic	not near genes	chrX	11319446	intergenic	not near genes	chrX_6_11315001	chrX_11315001	RAL-810
2104	chrX	11633415	11633450	chrX	11640469	11640504	297	8	7054	1.5	1.5	1.5	3.2	7089	chrX	11633415	intron	Ptp10D +	chrX	11636960	intron	Ptp10D +	chrX	11640504	intron	Ptp10D +	chrX_8_11635001	chrX_11635001	RAL-810
2105	chrX	11645113	11645121	chrX	11648283	11648291	NOF	5	3170	4.5	2.5	3.5	1.1	3178	chrX	11645113	intron	Ptp10D +	chrX	11646702	intron	Ptp10D +	chrX	11648291	intron	Ptp10D +	chrX_5_11645001	chrX_11645001	RAL-810
2119	chrX	12930598	12930608	chrX	12937714	12937724	HMS-Beagle	4	7116	5.5	9.5	7.5	0.5	7126	chrX	12930598	intron	fne +	chrX	12934161	intron	fne +	chrX	12937724	intron	fne +	chrX_4_12930001	chrX_12930001	RAL-810
2133	chrX	13401481	13401522	chrX	13401833	13401874	jockey	5	351	3.0	1.0	2.0	1.7	393	chrX	13401481	intergenic	CG1673 +,CG12725 -	chrX	13401678	intergenic	CG12725 -,CG1673 +	chrX	13401874	3` UTR	CG12725 -	chrX_5_13400001	chrX_13400001	RAL-810
2134	chrX	13429469	13429494	chrX	13430618	13430642	jockey	6	1149	0.0	5.0	2.5	1.7	1173	chrX	13429469	intergenic	not near genes	chrX	13430056	intergenic	not near genes	chrX	13430642	intergenic	not near genes	chrX_6_13430001	chrX_13430001	RAL-810
2136	chrX	13463649	13463668	chrX	13469226	13469245	mdg3	7	5577	4.0	2.0	3.0	1.8	5596	chrX	13463649	intron	Neto +	chrX	13466447	intron	Neto +	chrX	13469245	intron	Neto +	chrX_7_13465001	chrX_13465001	RAL-810
2143	chrX	14105038	14105054	chrX	14114189	14114205	roo	6	9150	3.0	1.5	2.2	1.9	9167	chrX	14105038	intergenic	not near genes	chrX	14109622	intergenic	not near genes	chrX	14114205	5` UTR	CR44657 +	chrX_6_14105001	chrX_14105001	RAL-810
2145	chrX	14157592	14157619	chrX	14163249	14163276	297	6	5657	2.5	2.0	2.2	1.9	5684	chrX	14157592	intergenic	not near genes	chrX	14160434	intergenic	not near genes	chrX	14163276	intergenic	not near genes	chrX_6_14160001	chrX_14160001	RAL-810
2152	chrX	14636464	14636491	chrX	14641905	14641932	I-element	4	5441	1.5	3.0	2.2	1.2	5468	chrX	14636464	intron	NetA -	chrX	14639198	intron	NetA -	chrX	14641932	intron	NetA -	chrX_4_14635001	chrX_14635001	RAL-810
2154	chrX	14778034	14778061	chrX	14782831	14782858	Doc	4	4797	2.5	3.5	3.0	1.0	4824	chrX	14778034	intergenic	CG5347 +	chrX	14780446	intergenic	not near genes	chrX	14782858	intergenic	Ag5r2 -	chrX_4_14780001	chrX_14780001	RAL-810
2156	chrX	14818776	14818798	chrX	14823980	14824001	copia	4	5204	1.0	5.0	3.0	1.0	5225	chrX	14818776	intron	rut -	chrX	14821388	intron	rut -	chrX	14824001	intron	rut -	chrX_4_14820001	chrX_14820001	RAL-810
2160	chrX	14936858	14936889	chrX	14946115	14946146	roo	13	9257	2.5	2.5	2.5	3.7	9288	chrX	14936858	intron	pdgy -	chrX	14941502	intron	pdgy -	chrX	14946146	intron	pdgy -	chrX_13_14940001	chrX_14940001	RAL-810
2166	chrX	15413048	15413085	chrX	15417350	15417387	Juan	13	4299	2.5	1.0	1.8	4.6	4339	chrX	15413048	intron	Cngl -	chrX	15415218	intron	Cngl -	chrX	15417387	intron	Cngl -	chrX_13_15415001	chrX_15415001	RAL-810
2167	chrX	15435693	15435703	chrX	15436126	15436136	rover	4	433	0.0	4.0	2.0	1.3	443	chrX	15435693	intron	Cngl -	chrX	15435914	intron	Cngl -	chrX	15436136	intron	Cngl -	chrX_4_15435001	chrX_15435001	RAL-810
2181	chrX	16222779	16222801	chrX	16231129	16231151	roo	6	8349	1.0	2.5	1.8	2.1	8372	chrX	16222779	intergenic	not near genes	chrX	16226965	intergenic	not near genes	chrX	16231151	intergenic	not near genes	chrX_6_16225001	chrX_16225001	RAL-810
2183	chrX	16340685	16340700	chrX	16349842	16349857	roo	7	9157	3.5	3.5	3.5	1.6	9172	chrX	16340685	intergenic	Dsp1 +	chrX	16345271	intergenic	not near genes	chrX	16349857	intergenic	sl +	chrX_7_16345001	chrX_16345001	RAL-810
2184	chrX	16492646	16492677	chrX	16498223	16498254	mdg3	4	5577	3.0	3.5	3.2	1.0	5608	chrX	16492646	intron	para -	chrX	16495450	intron	para -	chrX	16498254	intron	para -	chrX_4_16495001	chrX_16495001	RAL-810
2189	chrX	16936013	16936032	chrX	16936430	16936450	jockey	6	418	0.0	3.0	1.5	2.4	437	chrX	16936013	intron	CG4928 +	chrX	16936232	intron	CG4928 +	chrX	16936450	intron	CG4928 +	chrX_6_16935001	chrX_16935001	RAL-810
2193	chrX	17195214	17195237	chrX	17200299	17200321	flea	6	5084	4.5	4.0	4.2	1.2	5107	chrX	17195214	3` UTR	baz +	chrX	17197768	3` UTR	baz +	chrX	17200321	3` UTR	baz +	chrX_6_17195001	chrX_17195001	RAL-810
2199	chrX	17792949	17792975	chrX	17796247	17796273	flea	6	3298	3.5	2.5	3.0	1.5	3324	chrX	17792949	intron	OdsH +	chrX	17794611	intron	OdsH +	chrX	17796273	intron	OdsH +	chrX_6_17790001	chrX_17790001	RAL-810
2204	chrX	18429492	18429527	chrX	18434803	18434838	Transpac	7	5311	2.5	4.5	3.5	1.6	5346	chrX	18429492	intergenic	not near genes	chrX	18432165	intergenic	not near genes	chrX	18434838	intergenic	not near genes	chrX_7_18430001	chrX_18430001	RAL-810
2218	chrX	18957070	18957098	chrX	18965732	18965761	roo	8	8663	2.5	3.5	3.0	2.0	8691	chrX	18957070	intron	CG43759 +	chrX	18961416	intron	CG43759 +	chrX	18965761	intron	CG43759 +	chrX_8_18960001	chrX_18960001	RAL-810
2222	chrX	19060407	19060434	chrX	19065191	19065218	Doc	8	4784	4.0	5.0	4.5	1.5	4811	chrX	19060407	intron	CG14190 +	chrX	19062812	intron	CG14190 +	chrX	19065218	intron	CG14190 +	chrX_8_19060001	chrX_19060001	RAL-810
2229	chrX	19472126	19472155	chrX	19472696	19472701	jockey	7	566	3.5	2.5	3.0	1.8	575	chrX	19472126	intergenic	kek5 +	chrX	19472414	intergenic	kek5 +	chrX	19472701	intergenic	not near genes	chrX_7_19470001	chrX_19470001	RAL-810
2232	chrX	19710074	19710101	chrX	19711860	19711886	S-element	5	1786	2.5	3.0	2.8	1.3	1812	chrX	19710074	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711886	intron	meso18E -	chrX_5_19710001	chrX_19710001	RAL-810
2246	chrX	20504136	20504155	chrX	20505657	20505675	transib2	8	1521	2.0	3.5	2.8	2.1	1539	chrX	20504136	intron	RhoGAP19D -	chrX	20504906	intron	RhoGAP19D -	chrX	20505675	intron	RhoGAP19D -	chrX_8_20500001	chrX_20500001	RAL-810
2248	chrX	20940718	20940739	chrX	20942187	20942208	hobo	5	1468	3.0	1.0	2.0	1.7	1490	chrX	20940718	intergenic	not near genes	chrX	20941463	intergenic	not near genes	chrX	20942208	intergenic	not near genes	chrX_5_20940001	chrX_20940001	RAL-810
2249	chrX	20956988	20957010	chrX	20962430	20962452	I-element	9	5442	3.0	3.0	3.0	2.2	5464	chrX	20956988	intergenic	not near genes	chrX	20959720	intergenic	not near genes	chrX	20962452	intergenic	Ser6 -	chrX_9_20955001	chrX_20955001	RAL-810
2254	chrX	21086134	21086165	chrX	21087163	21087194	jockey	7	1028	2.0	3.5	2.8	1.8	1060	chrX	21086134	intergenic	not near genes	chrX	21086664	intergenic	not near genes	chrX	21087194	intergenic	not near genes	chrX_7_21085001	chrX_21085001	RAL-810
2261	chrX	22522640	22522650	chrX	22525460	22525470	NOF	6	2820	3.0	0.0	1.5	2.4	2830	chrX	22522640	intron	CG17600 +	chrX	22524055	intron	CG17600 +	chrX	22525470	intron	CG17600 +	chrX_6_22520001	chrX_22520001	RAL-810
2262	chrX	22564559	22564574	chrX	22575131	22575146	jockey	4	10572	9.0	5.5	7.2	0.5	10587	chrX	22564559	intergenic	not near genes	chrX	22569852	intergenic	not near genes	chrX	22575146	intergenic	not near genes	chrX_4_22565001	chrX_22565001	RAL-810
2265	chrX	22697495	22697516	chrX	22701791	22701813	Juan	7	4297	8.0	3.5	5.8	1.0	4318	chrX	22697495	intron	CR44997 +	chrX	22699654	intron	CR44997 +	chrX	22701813	intron	CR44997 +	chrX_7_22695001	chrX_22695001	RAL-810
2268	chrX	22811991	22812002	chrX	22816764	22816775	F-element	5	4773	5.0	3.0	4.0	1.0	4784	chrX	22811991	intergenic	CG12446 -	chrX	22814383	intergenic	not near genes	chrX	22816775	intergenic	not near genes	chrX_5_22810001	chrX_22810001	RAL-810
2270	chrX	22967392	22967409	chrX	23154543	23154560	diver	5	187151	1.0	9.5	5.2	0.8	187168	chrX	22967392	intergenic	not near genes	chrX	23060976	intergenic	not near genes	chrX	23154560	intergenic	not near genes	chrX_5_23060001	chrX_23060001	RAL-810
2271	chrX	22987103	22987133	chrX	22989762	22989792	Burdock	6	2659	2.0	1.5	1.8	2.1	2689	chrX	22987103	intron,intron	stnA -,stnB -	chrX	22988448	intron,intron	stnA -,stnB -	chrX	22989792	intron,intron	stnA -,stnB -	chrX_6_22985001	chrX_22985001	RAL-810
2273	chrX	22996314	22996340	chrX	23003546	23003572	roo	5	7232	2.5	2.0	2.2	1.6	7258	chrX	22996314	intron,intron	stnA -,stnB -	chrX	22999943	intron,intron	stnA -,stnB -	chrX	23003572	intron,intron	stnA -,stnB -	chrX_5_22995001	chrX_22995001	RAL-810
2274	chrX	23036381	23036410	chrX	23037782	23037811	pogo	6	1401	5.0	3.0	4.0	1.2	1430	chrX	23036381	intron	CG12061 +	chrX	23037096	intron	CG12061 +	chrX	23037811	intron	CG12061 +	chrX_6_23035001	chrX_23035001	RAL-810
2278	chrY	1431370	1431372	chrY	1447406	1447408	Doc	4	16036	6.5	5.5	6.0	0.6	16038	chrY	1431370	intergenic	not near genes	chrY	1439389	intergenic	not near genes	chrY	1447408	intergenic	not near genes	chrY_4_1435001	chrY_1435001	RAL-810