SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47460	47490	chr2L	52564	52595	jockey	7	5104	1.5	3.5	2.5	2.0	5135	chr2L	47460	intron	Cda5 -	chr2L	50028	intron	Cda5 -	chr2L	52595	intron	Cda5 -	chr2L_7_50001	chr2L_50001	RAL-804
11	chr2L	347890	347919	chr2L	355389	355404	blood	8	7494	1.5	3.0	2.2	2.5	7514	chr2L	347890	3` UTR	Plc21C +	chr2L	351647	intron	Plc21C +	chr2L	355404	3` UTR	Plc21C +	chr2L_8_350001	chr2L_350001	RAL-804
23	chr2L	976897	976910	chr2L	984533	984546	roo	7	7636	1.5	1.5	1.5	2.8	7649	chr2L	976897	intergenic	not near genes	chr2L	980722	intergenic	not near genes	chr2L	984546	intergenic	not near genes	chr2L_7_980001	chr2L_980001	RAL-804
27	chr2L	1220130	1220161	chr2L	1227596	1227627	blood	13	7466	2.5	2.5	2.5	3.7	7497	chr2L	1220130	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227627	intron	CG42329 +	chr2L_13_1220001	chr2L_1220001	RAL-804
32	chr2L	1570686	1570702	chr2L	1573558	1573574	F-element	6	2872	6.0	2.0	4.0	1.2	2888	chr2L	1570686	intron	haf +	chr2L	1572130	intron	haf +	chr2L	1573574	intron	haf +	chr2L_6_1570001	chr2L_1570001	RAL-804
34	chr2L	1678998	1679010	chr2L	1686458	1686475	blood	7	7464	0.5	5.5	3.0	1.8	7477	chr2L	1678998	intron	chinmo +	chr2L	1682736	intron	chinmo +	chr2L	1686475	intron	chinmo +	chr2L_7_1680001	chr2L_1680001	RAL-804
35	chr2L	1711354	1711385	chr2L	1711678	1711709	mdg3	14	322	3.5	5.0	4.2	2.7	355	chr2L	1711354	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711532	3` UTR	frtz -	chr2L	1711709	3` UTR	frtz -	chr2L_14_1710001	chr2L_1710001	RAL-804
40	chr2L	2100375	2100408	chr2L	2109525	2109547	roo	13	9146	3.5	2.5	3.0	3.2	9172	chr2L	2100375	intron	dpr3 -	chr2L	2104961	intron	dpr3 -	chr2L	2109547	intron	dpr3 -	chr2L_13_2100001	chr2L_2100001	RAL-804
58	chr2L	3073032	3073064	chr2L	3078235	3078266	copia	12	5203	1.0	6.0	3.5	2.7	5234	chr2L	3073032	intron	toc -	chr2L	3075649	intron	toc -	chr2L	3078266	intron	toc -	chr2L_12_3075001	chr2L_3075001	RAL-804
61	chr2L	3202736	3202771	chr2L	3210165	3210200	mdg1	12	7429	1.5	1.5	1.5	4.8	7464	chr2L	3202736	intergenic	not near genes	chr2L	3206468	intergenic	not near genes	chr2L	3210200	intergenic	CR45336 +	chr2L_12_3205001	chr2L_3205001	RAL-804
62	chr2L	3251499	3251513	chr2L	3259064	3259078	springer	4	7565	3.5	2.0	2.8	1.1	7579	chr2L	3251499	intergenic	not near genes	chr2L	3255288	intergenic	not near genes	chr2L	3259078	intergenic	not near genes	chr2L_4_3255001	chr2L_3255001	RAL-804
64	chr2L	3649789	3649821	chr2L	3654991	3655006	copia	7	5200	1.5	2.5	2.0	2.3	5217	chr2L	3649789	intron	for -	chr2L	3652398	intron	for -	chr2L	3655006	intron	for -	chr2L_7_3650001	chr2L_3650001	RAL-804
68	chr2L	4066040	4066058	chr2L	4068862	4068883	Juan	4	2824	2.5	3.0	2.8	1.1	2843	chr2L	4066040	intron	ed +	chr2L	4067462	intron	ed +	chr2L	4068883	intron	ed +	chr2L_4_4065001	chr2L_4065001	RAL-804
74	chr2L	4181292	4181304	chr2L	4183924	4183935	Burdock	5	2632	1.5	3.5	2.5	1.4	2643	chr2L	4181292	intergenic	not near genes	chr2L	4182614	intergenic	not near genes	chr2L	4183935	intergenic	not near genes	chr2L_5_4180001	chr2L_4180001	RAL-804
80	chr2L	4601704	4601737	chr2L	4609145	4609178	mdg1	10	7440	3.5	1.5	2.5	2.9	7474	chr2L	4601704	intron	dp -	chr2L	4605441	intron	dp -	chr2L	4609178	intron	dp -	chr2L_10_4605001	chr2L_4605001	RAL-804
87	chr2L	4918167	4918191	chr2L	4923240	4923264	jockey	4	5073	1.0	3.5	2.2	1.2	5097	chr2L	4918167	intron	hoe1 -	chr2L	4920716	intron	hoe1 -	chr2L	4923264	intron	hoe1 -	chr2L_4_4920001	chr2L_4920001	RAL-804
103	chr2L	5827720	5827739	chr2L	5836719	5836732	roo	15	9005	2.5	3.5	3.0	3.8	9012	chr2L	5827720	intron	TrissinR +	chr2L	5832226	intron	TrissinR +	chr2L	5836732	intron	TrissinR +	chr2L_15_5830001	chr2L_5830001	RAL-804
110	chr2L	6363150	6363181	chr2L	6366072	6366103	Burdock	9	2919	3.5	2.5	3.0	2.2	2953	chr2L	6363150	intergenic	not near genes	chr2L	6364626	intergenic	not near genes	chr2L	6366103	intergenic	not near genes	chr2L_9_6360001	chr2L_6360001	RAL-804
111	chr2L	6426877	6426884	chr2L	6445115	6445144	roo	4	18253	5.0	3.0	4.0	0.8	18267	chr2L	6426877	3` UTR	CG9527 -	chr2L	6436010	intron	CG9527 -	chr2L	6445144	exon	CG9527 -	chr2L_4_6435001	chr2L_6435001	RAL-804
118	chr2L	6876780	6876809	chr2L	6882970	6882999	diver	5	6188	7.0	5.5	6.2	0.7	6219	chr2L	6876780	intron	Nlg2 +	chr2L	6879890	intron	Nlg2 +	chr2L	6882999	intron	Nlg2 +	chr2L_5_6875001	chr2L_6875001	RAL-804
124	chr2L	7343328	7343358	chr2L	7350444	7350474	roo	4	7116	2.0	2.5	2.2	1.2	7146	chr2L	7343328	intron	Wnt6 +	chr2L	7346901	intron	Wnt6 +	chr2L	7350474	intron	Wnt6 +	chr2L_4_7345001	chr2L_7345001	RAL-804
131	chr2L	7959046	7959073	chr2L	7960456	7960483	pogo	7	1410	1.0	4.0	2.5	2.0	1437	chr2L	7959046	intron	Snoo -	chr2L	7959764	intron	Snoo -	chr2L	7960483	intron	Snoo -	chr2L_7_7955001	chr2L_7955001	RAL-804
132	chr2L	7977091	7977111	chr2L	7984066	7984086	297	9	6975	2.0	2.5	2.2	2.8	6995	chr2L	7977091	intron	Snoo -	chr2L	7980588	intron	Snoo -	chr2L	7984086	intron,5` UTR	Snoo -,CG7231 +	chr2L_9_7980001	chr2L_7980001	RAL-804
140	chr2L	8723115	8723130	chr2L	8731492	8731507	Tirant	7	8377	3.5	3.5	3.5	1.6	8392	chr2L	8723115	intron	raw -	chr2L	8727311	intron	raw -	chr2L	8731507	intron	raw -	chr2L_7_8725001	chr2L_8725001	RAL-804
144	chr2L	9000283	9000306	chr2L	9007793	9007816	roo	10	7509	6.5	6.0	6.2	1.4	7533	chr2L	9000283	intergenic	Try29F +	chr2L	9004050	intergenic	not near genes	chr2L	9007816	intergenic	not near genes	chr2L_10_9000001	chr2L_9000001	RAL-804
147	chr2L	9217996	9218003	chr2L	9222780	9222790	Doc	4	4786	2.0	0.0	1.0	2.0	4794	chr2L	9217996	intron	tai +	chr2L	9220393	intron	tai +	chr2L	9222790	intron	tai +	chr2L_4_9220001	chr2L_9220001	RAL-804
159	chr2L	9393506	9393528	chr2L	9396473	9396495	jockey	14	2965	5.0	5.0	5.0	2.3	2989	chr2L	9393506	intron	Shawl -	chr2L	9395000	intron	Shawl -	chr2L	9396495	intron	Shawl -	chr2L_14_9395001	chr2L_9395001	RAL-804
167	chr2L	9973727	9973757	chr2L	9980843	9980876	HMS-Beagle	18	7117	5.5	5.5	5.5	2.8	7149	chr2L	9973727	intergenic	not near genes	chr2L	9977302	intergenic	not near genes	chr2L	9980876	intergenic	not near genes	chr2L_18_9975001	chr2L_9975001	RAL-804
172	chr2L	10156321	10156353	chr2L	10163791	10163819	blood	8	7468	3.5	4.0	3.8	1.7	7498	chr2L	10156321	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160070	intron	CG44153 -	chr2L	10163819	intron	CG44153 -	chr2L_8_10160001	chr2L_10160001	RAL-804
178	chr2L	10592852	10592872	chr2L	10600514	10600534	opus	4	7662	1.0	2.0	1.5	1.6	7682	chr2L	10592852	intron	Trim9 +	chr2L	10596693	intron	Trim9 +	chr2L	10600534	intron	Trim9 +	chr2L_4_10595001	chr2L_10595001	RAL-804
184	chr2L	10862849	10862882	chr2L	10864451	10864467	Rt1c	14	1607	1.0	1.5	1.2	6.4	1618	chr2L	10862849	3` UTR	CR43807 -	chr2L	10863658	intron	CR43807 -	chr2L	10864467	3` UTR	CR43807 -	chr2L_14_10860001	chr2L_10860001	RAL-804
186	chr2L	10946955	10946977	chr2L	10956170	10956190	roo	9	9214	4.0	8.5	6.2	1.2	9235	chr2L	10946955	intron	dpr2 -	chr2L	10951572	intron	dpr2 -	chr2L	10956190	intron	dpr2 -	chr2L_9_10950001	chr2L_10950001	RAL-804
195	chr2L	11563648	11563667	chr2L	11568843	11568870	copia	8	5203	2.0	4.5	3.2	1.9	5222	chr2L	11563648	intergenic	not near genes	chr2L	11566259	intergenic	not near genes	chr2L	11568870	intergenic	not near genes	chr2L_8_11565001	chr2L_11565001	RAL-804
196	chr2L	11713505	11713533	chr2L	11720973	11721001	blood	16	7468	3.5	1.5	2.5	4.6	7496	chr2L	11713505	intergenic	not near genes	chr2L	11717253	intergenic	not near genes	chr2L	11721001	intergenic	CR44143 +	chr2L_16_11715001	chr2L_11715001	RAL-804
214	chr2L	12558321	12558346	chr2L	12565450	12565474	HMS-Beagle	10	7128	3.0	1.5	2.2	3.1	7153	chr2L	12558321	intergenic	not near genes	chr2L	12561898	intergenic	not near genes	chr2L	12565474	intergenic	not near genes	chr2L_10_12560001	chr2L_12560001	RAL-804
215	chr2L	12728920	12728941	chr2L	12729163	12729181	pogo	4	242	4.0	1.0	2.5	1.1	261	chr2L	12728920	intron	MRP +	chr2L	12729050	intron	MRP +	chr2L	12729181	intron	MRP +	chr2L_4_12725001	chr2L_12725001	RAL-804
216	chr2L	12731054	12731086	chr2L	12735821	12735853	F-element	8	4767	3.0	2.5	2.8	2.1	4799	chr2L	12731054	intron	MRP +	chr2L	12733454	intron	MRP +	chr2L	12735853	intron	MRP +	chr2L_8_12730001	chr2L_12730001	RAL-804
217	chr2L	12739175	12739204	chr2L	12743956	12743985	Doc	7	4781	1.5	4.5	3.0	1.8	4810	chr2L	12739175	exon	MRP +	chr2L	12741580	intron	MRP +	chr2L	12743985	exon	MRP +	chr2L_7_12740001	chr2L_12740001	RAL-804
219	chr2L	12781806	12781815	chr2L	12789249	12789258	Quasimodo	5	7443	5.0	4.5	4.8	0.9	7452	chr2L	12781806	intergenic	not near genes	chr2L	12785532	intergenic	not near genes	chr2L	12789258	intergenic	not near genes	chr2L_5_12785001	chr2L_12785001	RAL-804
220	chr2L	12791606	12791631	chr2L	12795280	12795306	F-element	4	3670	2.5	0.5	1.5	1.6	3700	chr2L	12791606	intergenic	not near genes	chr2L	12793456	intergenic	not near genes	chr2L	12795306	intergenic	not near genes	chr2L_4_12790001	chr2L_12790001	RAL-804
221	chr2L	12861694	12861727	chr2L	12863160	12863182	hobo	10	1465	2.5	2.0	2.2	3.1	1488	chr2L	12861694	intergenic	not near genes	chr2L	12862438	intergenic	not near genes	chr2L	12863182	intergenic	not near genes	chr2L_10_12860001	chr2L_12860001	RAL-804
224	chr2L	12894019	12894054	chr2L	12895486	12895520	hobo	5	1464	5.5	6.0	5.8	0.7	1501	chr2L	12894019	intergenic	not near genes	chr2L	12894770	intergenic	not near genes	chr2L	12895520	intergenic	not near genes	chr2L_5_12890001	chr2L_12890001	RAL-804
226	chr2L	12933848	12933879	chr2L	12941315	12941346	blood	10	7466	5.0	4.5	4.8	1.7	7498	chr2L	12933848	intergenic	not near genes	chr2L	12937597	intergenic	not near genes	chr2L	12941346	intergenic	not near genes	chr2L_10_12935001	chr2L_12935001	RAL-804
232	chr2L	13405649	13405680	chr2L	13410446	13410477	Doc	12	4796	2.5	3.0	2.8	3.2	4828	chr2L	13405649	exon	CG7110 +	chr2L	13408063	intron	CG7110 +	chr2L	13410477	intron	CG7110 +	chr2L_12_13405001	chr2L_13405001	RAL-804
233	chr2L	13449462	13449496	chr2L	13456898	13456932	Quasimodo	4	7436	0.0	2.0	1.0	2.0	7470	chr2L	13449462	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453197	intron	CG42784 +	chr2L	13456932	intron	CG42784 +	chr2L_4_13450001	chr2L_13450001	RAL-804
234	chr2L	13481453	13481475	chr2L	13482060	13482082	jockey	8	607	3.5	3.0	3.2	1.9	629	chr2L	13481453	intron	CG42784 +	chr2L	13481768	intron	CG42784 +	chr2L	13482082	intron	CG42784 +	chr2L_8_13480001	chr2L_13480001	RAL-804
237	chr2L	13761807	13761833	chr2L	13762918	13762943	Doc	7	1110	4.0	2.0	3.0	1.8	1136	chr2L	13761807	intron	TM9SF4 +	chr2L	13762375	intron	TM9SF4 +	chr2L	13762943	intron	TM9SF4 +	chr2L_7_13760001	chr2L_13760001	RAL-804
238	chr2L	13853088	13853118	chr2L	13862232	13862268	roo	9	9149	3.0	3.5	3.2	2.1	9180	chr2L	13853088	intron	CenG1A +	chr2L	13857678	intron	CenG1A +	chr2L	13862268	intron	CenG1A +	chr2L_9_13855001	chr2L_13855001	RAL-804
245	chr2L	14642569	14642604	chr2L	14651732	14651767	roo	11	9163	2.5	1.5	2.0	3.7	9198	chr2L	14642569	intron	osp -	chr2L	14647168	intron	osp -	chr2L	14651767	intron	osp -	chr2L_11_14645001	chr2L_14645001	RAL-804
253	chr2L	14803880	14803910	chr2L	14809083	14809111	copia	9	5203	1.5	4.5	3.0	2.2	5231	chr2L	14803880	intergenic	not near genes	chr2L	14806496	intergenic	not near genes	chr2L	14809111	intergenic	not near genes	chr2L_9_14805001	chr2L_14805001	RAL-804
255	chr2L	14889952	14889988	chr2L	14890377	14890413	jockey	7	425	3.5	3.5	3.5	1.6	461	chr2L	14889952	intergenic	not near genes	chr2L	14890182	intergenic	not near genes	chr2L	14890413	intergenic	not near genes	chr2L_7_14890001	chr2L_14890001	RAL-804
263	chr2L	15446053	15446084	chr2L	15453522	15453552	blood	5	7469	1.5	2.5	2.0	1.7	7499	chr2L	15446053	intergenic	not near genes	chr2L	15449802	intergenic	not near genes	chr2L	15453552	intergenic	not near genes	chr2L_5_15445001	chr2L_15445001	RAL-804
268	chr2L	15586416	15586438	chr2L	15593468	15593490	297	4	7052	2.0	2.0	2.0	1.3	7074	chr2L	15586416	intergenic	not near genes	chr2L	15589953	intergenic	not near genes	chr2L	15593490	intergenic	not near genes	chr2L_4_15585001	chr2L_15585001	RAL-804
270	chr2L	15956027	15956045	chr2L	15957494	15957512	hobo	6	1467	2.5	2.0	2.2	1.9	1485	chr2L	15956027	intron	beat-Ib -	chr2L	15956770	intron	beat-Ib -	chr2L	15957512	intron	beat-Ib -	chr2L_6_15955001	chr2L_15955001	RAL-804
275	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	5	145889	13.0	10.0	11.5	0.4	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-804
279	chr2L	16280254	16280286	chr2L	16281422	16281440	1360	7	1163	1.0	2.5	1.8	2.5	1186	chr2L	16280254	intron	crp -	chr2L	16280847	intron	crp -	chr2L	16281440	intron	crp -	chr2L_7_16280001	chr2L_16280001	RAL-804
284	chr2L	16958117	16958129	chr2L	16962905	16962917	Doc	4	4788	1.5	4.5	3.0	1.0	4800	chr2L	16958117	intergenic	not near genes	chr2L	16960517	intergenic	not near genes	chr2L	16962917	intergenic	not near genes	chr2L_4_16960001	chr2L_16960001	RAL-804
290	chr2L	17167564	17167591	chr2L	17167805	17167832	pogo	7	241	0.5	3.0	1.8	2.5	268	chr2L	17167564	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167698	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167832	intron,intron	CG34106 +,beat-IIIa +	chr2L_7_17165001	chr2L_17165001	RAL-804
291	chr2L	17273190	17273226	chr2L	17277973	17278009	F-element	7	4780	3.5	1.0	2.2	2.2	4819	chr2L	17273190	intergenic	not near genes	chr2L	17275600	intergenic	not near genes	chr2L	17278009	intergenic	not near genes	chr2L_7_17275001	chr2L_17275001	RAL-804
296	chr2L	17951949	17951971	chr2L	17953416	17953438	hobo	5	1467	1.5	1.0	1.2	2.3	1489	chr2L	17951949	intergenic	CR44398 -,CR44397 -	chr2L	17952694	intergenic	not near genes	chr2L	17953438	intergenic	not near genes	chr2L_5_17950001	chr2L_17950001	RAL-804
303	chr2L	18408031	18408050	chr2L	18412815	18412834	Doc	6	4784	6.5	0.0	3.2	1.4	4803	chr2L	18408031	intergenic	not near genes	chr2L	18410432	intergenic	not near genes	chr2L	18412834	intergenic	not near genes	chr2L_6_18410001	chr2L_18410001	RAL-804
312	chr2L	19147374	19147402	chr2L	19154409	19154437	297	9	7034	2.5	3.5	3.0	2.2	7063	chr2L	19147374	intron	brat +	chr2L	19150906	intron	brat +	chr2L	19154437	intron	brat +	chr2L_9_19150001	chr2L_19150001	RAL-804
318	chr2L	19345012	19345040	chr2L	19357221	19357249	blood	6	12209	3.5	2.5	3.0	1.5	12237	chr2L	19345012	intron	dnt -	chr2L	19351130	intron	dnt -	chr2L	19357249	intron	dnt -	chr2L_6_19350001	chr2L_19350001	RAL-804
325	chr2L	19620098	19620125	chr2L	19621080	19621113	jockey	8	987	8.0	2.5	5.2	1.3	1015	chr2L	19620098	intron	Lar +	chr2L	19620606	intron	Lar +	chr2L	19621113	intron	Lar +	chr2L_8_19620001	chr2L_19620001	RAL-804
326	chr2L	19652571	19652600	chr2L	19674005	19674034	opus	14	21434	3.5	2.5	3.0	3.5	21463	chr2L	19652571	intron	Lar +	chr2L	19663302	intron	Lar +	chr2L	19674034	intron	Lar +	chr2L_14_19660001	chr2L_19660001	RAL-804
327	chr2L	19703539	19703566	chr2L	19712675	19712702	roo	8	9135	5.0	4.5	4.8	1.4	9163	chr2L	19703539	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712702	intron	Lar +	chr2L_8_19705001	chr2L_19705001	RAL-804
329	chr2L	19762808	19762840	chr2L	19763050	19763082	pogo	7	242	1.0	1.5	1.2	3.2	274	chr2L	19762808	5` UTR	fbp -	chr2L	19762945	intron	fbp -	chr2L	19763082	intron	fbp -	chr2L_7_19760001	chr2L_19760001	RAL-804
340	chr2L	20576217	20576245	chr2L	20583685	20583709	blood	10	7466	6.5	1.5	4.0	2.0	7492	chr2L	20576217	intergenic	CR45347 +	chr2L	20579963	intergenic	not near genes	chr2L	20583709	3` UTR	CR44909 -	chr2L_10_20575001	chr2L_20575001	RAL-804
341	chr2L	20639511	20639532	chr2L	20639786	20639806	INE-1	4	275	3.5	4.5	4.0	0.8	295	chr2L	20639511	intergenic	not near genes	chr2L	20639658	intergenic	CG31680 +	chr2L	20639806	intergenic	CG31680 +	chr2L_4_20635001	chr2L_20635001	RAL-804
343	chr2L	20976654	20976667	chr2L	20981469	20981482	X-element	4	4814	1.5	2.0	1.8	1.4	4828	chr2L	20976654	intron	CG42238 -	chr2L	20979068	intron	CG42238 -	chr2L	20981482	intron	CG42238 -	chr2L_4_20975001	chr2L_20975001	RAL-804
345	chr2L	21041137	21041160	chr2L	21049398	21049421	Tirant	7	8261	2.0	3.0	2.5	2.0	8284	chr2L	21041137	intron	CG42238 -	chr2L	21045279	intron	CG42238 -	chr2L	21049421	intron	CG42238 -	chr2L_7_21045001	chr2L_21045001	RAL-804
351	chr2L	21597027	21597056	chr2L	21604771	21604800	roo	5	7743	1.0	0.5	0.8	2.8	7773	chr2L	21597027	intergenic	not near genes	chr2L	21600914	intergenic	not near genes	chr2L	21604800	intergenic	not near genes	chr2L_5_21600001	chr2L_21600001	RAL-804
352	chr2L	21981685	21981716	chr2L	21990850	21990881	roo	7	9165	1.5	3.5	2.5	2.0	9196	chr2L	21981685	exon	CG2528 -	chr2L	21986283	intron	CG2528 -	chr2L	21990881	exon	CG2528 -	chr2L_7_21985001	chr2L_21985001	RAL-804
358	chr2R	552751	552789	chr2R	553969	553998	1360	5	1216	2.5	6.0	4.2	1.0	1247	chr2R	552751	intron	CG40378 +	chr2R	553374	intron	CG40378 +	chr2R	553998	intron	CG40378 +	chr2R_5_550001	chr2R_550001	RAL-804
363	chr2R	4622950	4622978	chr2R	4624109	4624137	1360	6	1159	5.0	2.5	3.8	1.2	1187	chr2R	4622950	intergenic	CR44101 -	chr2R	4623544	intergenic	not near genes	chr2R	4624137	intergenic	not near genes	chr2R_6_4620001	chr2R_4620001	RAL-804
366	chr2R	4838873	4838887	chr2R	4840396	4840410	transib2	5	1523	8.0	5.5	6.8	0.6	1537	chr2R	4838873	intergenic	not near genes	chr2R	4839642	intergenic	not near genes	chr2R	4840410	intergenic	not near genes	chr2R_5_4835001	chr2R_4835001	RAL-804
375	chr2R	5417998	5418024	chr2R	5420630	5420656	Burdock	7	2632	0.5	1.5	1.0	3.5	2658	chr2R	5417998	intron	laccase2 +	chr2R	5419327	intron	laccase2 +	chr2R	5420656	intron	laccase2 +	chr2R_7_5415001	chr2R_5415001	RAL-804
381	chr2R	5543204	5543218	chr2R	5547288	5547302	invader1	5	4084	0.0	2.5	1.2	2.3	4098	chr2R	5543204	intron	CG30438 +	chr2R	5545253	intron	CG30438 +	chr2R	5547302	intron	CG30438 +	chr2R_5_5545001	chr2R_5545001	RAL-804
384	chr2R	5869277	5869303	chr2R	5874353	5874379	flea	9	5075	1.5	2.0	1.8	3.2	5102	chr2R	5869277	intergenic	not near genes	chr2R	5871828	intergenic	not near genes	chr2R	5874379	intergenic	not near genes	chr2R_9_5870001	chr2R_5870001	RAL-804
390	chr2R	6096724	6096752	chr2R	6101911	6101936	BS	8	5190	4.0	3.5	3.8	1.7	5212	chr2R	6096724	intron	EcR -	chr2R	6099330	intron	EcR -	chr2R	6101936	intron	EcR -	chr2R_8_6095001	chr2R_6095001	RAL-804
393	chr2R	6494528	6494548	chr2R	6499288	6499310	F-element	6	4762	2.5	1.0	1.8	2.1	4782	chr2R	6494528	intergenic	not near genes	chr2R	6496919	intergenic	not near genes	chr2R	6499310	intergenic	not near genes	chr2R_6_6495001	chr2R_6495001	RAL-804
397	chr2R	6952171	6952185	chr2R	6959751	6959765	opus	4	7580	1.5	2.0	1.8	1.4	7594	chr2R	6952171	intron,intron	mim -,CheB42c -	chr2R	6955968	intron,intron	mim -,CheB42c -	chr2R	6959765	intron,intron	mim -,CheB42c -	chr2R_4_6955001	chr2R_6955001	RAL-804
399	chr2R	7235820	7235837	chr2R	7240912	7240926	jockey	8	5091	6.0	2.5	4.2	1.5	5106	chr2R	7235820	intergenic	not near genes	chr2R	7238373	intergenic	not near genes	chr2R	7240926	intergenic	not near genes	chr2R_8_7235001	chr2R_7235001	RAL-804
403	chr2R	7434893	7434916	chr2R	7439194	7439217	Juan	4	4301	2.5	1.0	1.8	1.4	4324	chr2R	7434893	intergenic	so +	chr2R	7437055	intergenic	not near genes	chr2R	7439217	intergenic	not near genes	chr2R_4_7435001	chr2R_7435001	RAL-804
404	chr2R	7608410	7608437	chr2R	7613612	7613630	I-element	14	5202	2.5	1.5	2.0	4.7	5220	chr2R	7608410	intron	CG1358 -	chr2R	7611020	intron	CG1358 -	chr2R	7613630	intron	CG1358 -	chr2R_14_7610001	chr2R_7610001	RAL-804
409	chr2R	7815671	7815700	chr2R	7822140	7822169	Burdock	12	6469	5.0	2.5	3.8	2.5	6498	chr2R	7815671	intergenic	CG1882 +	chr2R	7818920	intergenic	not near genes	chr2R	7822169	3` UTR	cathD -	chr2R_12_7815001	chr2R_7815001	RAL-804
410	chr2R	7862231	7862236	chr2R	7867345	7867350	flea	4	5114	6.5	1.5	4.0	0.8	5119	chr2R	7862231	intron	Dgk -	chr2R	7864790	intron	Dgk -	chr2R	7867350	intron	Dgk -	chr2R_4_7860001	chr2R_7860001	RAL-804
411	chr2R	7869196	7869213	chr2R	7873976	7873999	Doc	7	4784	3.0	3.5	3.2	1.7	4803	chr2R	7869196	intron	Dgk -	chr2R	7871598	intron	Dgk -	chr2R	7873999	intron	Dgk -	chr2R_7_7870001	chr2R_7870001	RAL-804
419	chr2R	8330861	8330894	chr2R	8331347	8331380	roo	12	486	3.0	2.0	2.5	3.4	519	chr2R	8330861	intron	pdm3 +	chr2R	8331120	intron	pdm3 +	chr2R	8331380	intron	pdm3 +	chr2R_12_8330001	chr2R_8330001	RAL-804
420	chr2R	8398218	8398243	chr2R	8402995	8403023	Doc	9	4779	4.0	3.0	3.5	2.0	4805	chr2R	8398218	intron	CG2121 -	chr2R	8400620	intron	CG2121 -	chr2R	8403023	intron	CG2121 -	chr2R_9_8400001	chr2R_8400001	RAL-804
430	chr2R	8722764	8722787	chr2R	8723005	8723028	pogo	11	239	6.0	4.5	5.2	1.8	264	chr2R	8722764	intron	CG14767 -	chr2R	8722896	intron	CG14767 -	chr2R	8723028	intron	CG14767 -	chr2R_11_8720001	chr2R_8720001	RAL-804
435	chr2R	9212691	9212725	chr2R	9213177	9213210	roo	15	485	5.0	2.5	3.8	3.1	519	chr2R	9212691	intergenic	CR45309 +	chr2R	9212950	intergenic	CR45309 +	chr2R	9213210	5` UTR	CR45309 +	chr2R_15_9210001	chr2R_9210001	RAL-804
436	chr2R	9726612	9726635	chr2R	9734163	9734185	17.6	5	7550	3.0	1.0	2.0	1.7	7573	chr2R	9726612	intron	sqa -	chr2R	9730398	intron	sqa -	chr2R	9734185	intron	sqa -	chr2R_5_9730001	chr2R_9730001	RAL-804
439	chr2R	9945440	9945455	chr2R	9945636	9945651	BS	10	196	3.5	2.5	3.0	2.5	211	chr2R	9945440	intron	Mef2 -	chr2R	9945546	intron	Mef2 -	chr2R	9945651	intron	Mef2 -	chr2R_10_9945001	chr2R_9945001	RAL-804
441	chr2R	10005855	10005863	chr2R	10007020	10007028	1360	4	1164	5.5	4.5	5.0	0.7	1173	chr2R	10005855	intron	Pka-R2 -	chr2R	10006442	intron	Pka-R2 -	chr2R	10007028	intron	Pka-R2 -	chr2R_4_10005001	chr2R_10005001	RAL-804
442	chr2R	10005868	10005875	chr2R	10007014	10007038	1360	6	1158	3.0	3.5	3.2	1.4	1170	chr2R	10005868	intron	Pka-R2 -	chr2R	10006453	intron	Pka-R2 -	chr2R	10007038	intron	Pka-R2 -	chr2R_6_10005001	chr2R_10005001	RAL-804
457	chr2R	10585582	10585589	chr2R	10594153	10594167	Tirant	4	8578	3.0	3.5	3.2	1.0	8585	chr2R	10585582	intron	psq +	chr2R	10589874	intron	psq +	chr2R	10594167	intron	psq +	chr2R_4_10585001	chr2R_10585001	RAL-804
466	chr2R	10948030	10948061	chr2R	10955575	10955595	17.6	15	7547	1.0	3.5	2.2	4.7	7565	chr2R	10948030	intergenic	not near genes	chr2R	10951812	intergenic	not near genes	chr2R	10955595	intergenic	not near genes	chr2R_15_10950001	chr2R_10950001	RAL-804
467	chr2R	10979660	10979682	chr2R	10980130	10980152	297	4	470	1.0	3.5	2.2	1.2	492	chr2R	10979660	intergenic	not near genes	chr2R	10979906	intergenic	not near genes	chr2R	10980152	intergenic	not near genes	chr2R_4_10975001	chr2R_10975001	RAL-804
468	chr2R	11009816	11009848	chr2R	11018990	11019021	roo	9	9174	1.5	2.5	2.0	3.0	9205	chr2R	11009816	intron	luna -	chr2R	11014418	intron	luna -	chr2R	11019021	intron	luna -	chr2R_9_11010001	chr2R_11010001	RAL-804
469	chr2R	11019891	11019912	chr2R	11024956	11024978	jockey	4	5066	2.0	4.0	3.0	1.0	5087	chr2R	11019891	intron	luna -	chr2R	11022434	intron	luna -	chr2R	11024978	intron	luna -	chr2R_4_11020001	chr2R_11020001	RAL-804
474	chr2R	11207826	11207845	chr2R	11208019	11208037	BS	5	193	6.0	3.5	4.8	0.9	211	chr2R	11207826	intron	shn +	chr2R	11207932	intron	shn +	chr2R	11208037	intron	shn +	chr2R_5_11205001	chr2R_11205001	RAL-804
476	chr2R	11297616	11297646	chr2R	11301937	11301966	flea	5	4321	3.0	1.0	2.0	1.7	4350	chr2R	11297616	intergenic	CG42336 -	chr2R	11299791	intergenic	not near genes	chr2R	11301966	5` UTR	CG7741 +	chr2R_5_11295001	chr2R_11295001	RAL-804
478	chr2R	11415528	11415546	chr2R	11418677	11418689	opus	4	3147	1.0	5.5	3.2	1.0	3161	chr2R	11415528	intron	Drip -	chr2R	11417108	intron	Drip -	chr2R	11418689	intron	Drip -	chr2R_4_11415001	chr2R_11415001	RAL-804
479	chr2R	11472649	11472680	chr2R	11473846	11473877	pogo	8	1197	0.5	2.0	1.2	3.6	1228	chr2R	11472649	intergenic	not near genes	chr2R	11473263	intergenic	not near genes	chr2R	11473877	intergenic	not near genes	chr2R_8_11470001	chr2R_11470001	RAL-804
494	chr2R	12501698	12501724	chr2R	12503857	12503886	Rt1c	9	2161	3.5	3.0	3.2	2.1	2188	chr2R	12501698	intron	fdl -	chr2R	12502792	intron	fdl -	chr2R	12503886	intron	fdl -	chr2R_9_12500001	chr2R_12500001	RAL-804
502	chr2R	12789311	12789323	chr2R	12797674	12797686	roo	4	8363	2.5	4.5	3.5	0.9	8375	chr2R	12789311	intron,3` UTR	sca +,CR45137 -	chr2R	12793498	intron,intron	sca +,CR45137 -	chr2R	12797686	intron,3` UTR	sca +,CR45137 -	chr2R_4_12790001	chr2R_12790001	RAL-804
506	chr2R	13136841	13136867	chr2R	13141639	13141665	Doc	19	4798	3.5	2.5	3.0	4.8	4824	chr2R	13136841	exon	Cap-G +	chr2R	13139253	intron	Cap-G +	chr2R	13141665	intron	Cap-G +	chr2R_19_13135001	chr2R_13135001	RAL-804
511	chr2R	13580498	13580522	chr2R	13580847	13580872	jockey	5	350	2.5	2.5	2.5	1.4	374	chr2R	13580498	3` UTR	CG6191 -	chr2R	13580685	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580872	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_5_13580001	chr2R_13580001	RAL-804
516	chr2R	13905602	13905626	chr2R	13907584	13907608	Rt1a	8	1980	1.5	4.0	2.8	2.1	2006	chr2R	13905602	intron	shot -	chr2R	13906605	intron	shot -	chr2R	13907608	intron	shot -	chr2R_8_13905001	chr2R_13905001	RAL-804
525	chr2R	14467311	14467325	chr2R	14476469	14476483	roo	9	9158	1.5	7.5	4.5	1.6	9172	chr2R	14467311	intergenic	not near genes	chr2R	14471897	intergenic	not near genes	chr2R	14476483	5` UTR	CR44462 +	chr2R_9_14470001	chr2R_14470001	RAL-804
530	chr2R	14889208	14889230	chr2R	14897816	14897838	Max-element	8	8608	6.0	0.5	3.2	1.9	8630	chr2R	14889208	intergenic	Cyp6a8 -	chr2R	14893523	intergenic	not near genes	chr2R	14897838	intergenic	not near genes	chr2R_8_14890001	chr2R_14890001	RAL-804
533	chr2R	15004739	15004746	chr2R	15005068	15005075	jockey	4	329	0.5	4.0	2.2	1.2	336	chr2R	15004739	intergenic	not near genes	chr2R	15004907	intergenic	not near genes	chr2R	15005075	intergenic	not near genes	chr2R_4_15000001	chr2R_15000001	RAL-804
534	chr2R	15015455	15015489	chr2R	15022878	15022911	mdg1	10	7423	2.0	4.0	3.0	2.5	7456	chr2R	15015455	intron	hbs +	chr2R	15019183	intron	hbs +	chr2R	15022911	intron	hbs +	chr2R_10_15015001	chr2R_15015001	RAL-804
537	chr2R	15084985	15084998	chr2R	15092034	15092047	297	4	7049	2.5	2.0	2.2	1.2	7062	chr2R	15084985	intergenic	not near genes	chr2R	15088516	intergenic	not near genes	chr2R	15092047	5` UTR	CR44457 +	chr2R_4_15085001	chr2R_15085001	RAL-804
539	chr2R	15119316	15119345	chr2R	15127797	15127825	Tirant	5	8480	3.0	2.5	2.8	1.3	8509	chr2R	15119316	intron	chn +	chr2R	15123570	intron	chn +	chr2R	15127825	intron	chn +	chr2R_5_15120001	chr2R_15120001	RAL-804
563	chr2R	17147253	17147259	chr2R	17152284	17152290	jockey	5	5031	3.5	3.5	3.5	1.1	5037	chr2R	17147253	intergenic	not near genes	chr2R	17149772	intergenic	not near genes	chr2R	17152290	intergenic	not near genes	chr2R_5_17145001	chr2R_17145001	RAL-804
565	chr2R	17176369	17176389	chr2R	17182559	17182579	diver	8	6190	2.5	2.0	2.2	2.5	6210	chr2R	17176369	intergenic	not near genes	chr2R	17179474	intergenic	not near genes	chr2R	17182579	intergenic	not near genes	chr2R_8_17175001	chr2R_17175001	RAL-804
566	chr2R	17236507	17236541	chr2R	17241710	17241745	copia	10	5204	1.5	1.0	1.2	4.5	5238	chr2R	17236507	intron	mbl +	chr2R	17239126	intron	mbl +	chr2R	17241745	intron	mbl +	chr2R_10_17235001	chr2R_17235001	RAL-804
569	chr2R	17485919	17485948	chr2R	17490689	17490716	F-element	10	4770	0.0	0.5	0.2	8.3	4797	chr2R	17485919	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488318	intron	NT5E-2 +	chr2R	17490716	intron	NT5E-2 +	chr2R_10_17485001	chr2R_17485001	RAL-804
572	chr2R	17784030	17784049	chr2R	17784269	17784290	pogo	7	240	3.5	7.0	5.2	1.1	260	chr2R	17784030	intergenic	mir-31a -	chr2R	17784160	intergenic	mir-31a -	chr2R	17784290	intergenic	mir-31a -	chr2R_7_17780001	chr2R_17780001	RAL-804
581	chr2R	18045669	18045690	chr2R	18046021	18046041	jockey	4	352	2.5	0.5	1.5	1.6	372	chr2R	18045669	intergenic	not near genes	chr2R	18045855	intergenic	not near genes	chr2R	18046041	intergenic	CG5767 -	chr2R_4_18045001	chr2R_18045001	RAL-804
583	chr2R	18111687	18111700	chr2R	18115554	18115568	F-element	4	3868	3.0	3.0	3.0	1.0	3881	chr2R	18111687	intergenic	not near genes	chr2R	18113628	intergenic	not near genes	chr2R	18115568	intergenic	not near genes	chr2R_4_18110001	chr2R_18110001	RAL-804
593	chr2R	18575814	18575830	chr2R	18581983	18582014	3S18	8	6182	2.5	4.0	3.2	1.9	6200	chr2R	18575814	intron	GEFmeso -	chr2R	18578914	intron	GEFmeso -	chr2R	18582014	intron	GEFmeso -	chr2R_8_18575001	chr2R_18575001	RAL-804
595	chr2R	18590865	18590899	chr2R	18600017	18600032	roo	10	9149	1.5	2.5	2.0	3.3	9167	chr2R	18590865	intron	GEFmeso -	chr2R	18595448	intron	GEFmeso -	chr2R	18600032	intron	GEFmeso -	chr2R_10_18595001	chr2R_18595001	RAL-804
608	chr2R	19776600	19776629	chr2R	19779923	19779952	jockey	9	3323	1.5	0.5	1.0	4.5	3352	chr2R	19776600	intergenic	not near genes	chr2R	19778276	intergenic	not near genes	chr2R	19779952	intergenic	not near genes	chr2R_9_19775001	chr2R_19775001	RAL-804
612	chr2R	19957443	19957463	chr2R	19962631	19962636	copia	4	5191	2.5	5.5	4.0	0.8	5193	chr2R	19957443	intergenic	CG44623 +	chr2R	19960040	intergenic	not near genes	chr2R	19962636	intergenic	not near genes	chr2R_4_19960001	chr2R_19960001	RAL-804
613	chr2R	20069242	20069259	chr2R	20071872	20071889	opus	6	2629	4.0	2.5	3.2	1.4	2647	chr2R	20069242	intergenic	not near genes	chr2R	20070566	intergenic	not near genes	chr2R	20071889	intergenic	not near genes	chr2R_6_20070001	chr2R_20070001	RAL-804
626	chr2R	20739442	20739477	chr2R	20744209	20744245	F-element	12	4768	5.5	2.5	4.0	2.4	4803	chr2R	20739442	intron	dpr +	chr2R	20741844	intron	dpr +	chr2R	20744245	intron	dpr +	chr2R_12_20740001	chr2R_20740001	RAL-804
642	chr2R	21738279	21738310	chr2R	21747435	21747470	roo	12	9155	1.0	3.5	2.2	3.8	9191	chr2R	21738279	intergenic	not near genes	chr2R	21742874	intergenic	not near genes	chr2R	21747470	intergenic	not near genes	chr2R_12_21740001	chr2R_21740001	RAL-804
643	chr2R	21753082	21753095	chr2R	21753567	21753580	roo	6	485	5.5	5.0	5.2	1.0	498	chr2R	21753082	intergenic	not near genes	chr2R	21753331	intergenic	not near genes	chr2R	21753580	intergenic	not near genes	chr2R_6_21750001	chr2R_21750001	RAL-804
644	chr2R	21809540	21809552	chr2R	21817780	21817792	roo	10	8240	3.0	7.5	5.2	1.6	8252	chr2R	21809540	intergenic	not near genes	chr2R	21813666	intergenic	not near genes	chr2R	21817792	intergenic	not near genes	chr2R_10_21810001	chr2R_21810001	RAL-804
659	chr2R	22349693	22349722	chr2R	22351477	22351506	jockey	10	1782	3.0	3.0	3.0	2.5	1813	chr2R	22349693	intron	Liprin-gamma -	chr2R	22350600	intron	Liprin-gamma -	chr2R	22351506	intron	Liprin-gamma -	chr2R_10_22350001	chr2R_22350001	RAL-804
660	chr2R	22360380	22360400	chr2R	22360813	22360827	jockey	7	432	4.5	2.0	3.2	1.7	447	chr2R	22360380	intron	Liprin-gamma -	chr2R	22360604	intron	Liprin-gamma -	chr2R	22360827	intron	Liprin-gamma -	chr2R_7_22360001	chr2R_22360001	RAL-804
664	chr2R	22525746	22525784	chr2R	22529300	22529311	jockey	7	3548	1.0	2.0	1.5	2.8	3565	chr2R	22525746	intron	px -	chr2R	22527528	intron	px -	chr2R	22529311	intron	px -	chr2R_7_22525001	chr2R_22525001	RAL-804
671	chr2R	22774965	22774995	chr2R	22775384	22775414	jockey	8	419	5.0	1.5	3.2	1.9	449	chr2R	22774965	intron	CG42260 -	chr2R	22775190	intron	CG42260 -	chr2R	22775414	intron	CG42260 -	chr2R_8_22775001	chr2R_22775001	RAL-804
692	chr2R	23914298	23914324	chr2R	23921922	23921947	412	9	7623	3.0	4.0	3.5	2.0	7649	chr2R	23914298	exon	kcc +	chr2R	23918122	intron	kcc +	chr2R	23921947	intron	kcc +	chr2R_9_23915001	chr2R_23915001	RAL-804
693	chr2R	23914326	23914330	chr2R	23921921	23921921	412	4	7607	3.0	4.0	3.5	0.9	7595	chr2R	23914326	exon	kcc +	chr2R	23918124	intron	kcc +	chr2R	23921921	intron	kcc +	chr2R_4_23915001	chr2R_23915001	RAL-804
697	chr2R	24147093	24147096	chr2R	24154644	24154666	412	4	7567	2.5	2.5	2.5	1.1	7573	chr2R	24147093	intron	Dat +	chr2R	24150880	intron	Dat +	chr2R	24154666	intron	Dat +	chr2R_4_24150001	chr2R_24150001	RAL-804
699	chr2R	24177236	24177259	chr2R	24184721	24184744	412	6	7484	1.0	3.5	2.2	1.9	7508	chr2R	24177236	3` UTR	Nop60B +	chr2R	24180990	intron	Nop60B +	chr2R	24184744	3` UTR	Nop60B +	chr2R_6_24180001	chr2R_24180001	RAL-804
702	chr2R	24353427	24353456	chr2R	24361788	24361815	roo	7	8361	2.5	4.0	3.2	1.7	8388	chr2R	24353427	intron,intron	bs +,CR44811 -	chr2R	24357621	intron,intron	bs +,CR44811 -	chr2R	24361815	intron,intron	bs +,CR44811 -	chr2R_7_24355001	chr2R_24355001	RAL-804
707	chr2R	24647587	24647613	chr2R	24655144	24655167	412	9	7556	3.5	2.5	3.0	2.2	7580	chr2R	24647587	intergenic	not near genes	chr2R	24651377	intergenic	not near genes	chr2R	24655167	intergenic	not near genes	chr2R_9_24650001	chr2R_24650001	RAL-804
709	chr2R	24727890	24727918	chr2R	24735392	24735425	mdg1	9	7506	0.0	2.5	1.2	4.1	7535	chr2R	24727890	intron	Mid1 -	chr2R	24731658	intron	Mid1 -	chr2R	24735425	intron	Mid1 -	chr2R_9_24730001	chr2R_24730001	RAL-804
710	chr2R	24763617	24763641	chr2R	24765592	24765613	G2	6	1974	3.5	3.5	3.5	1.3	1996	chr2R	24763617	exon	CG3894 +	chr2R	24764615	intron	CG3894 +	chr2R	24765613	exon	CG3894 +	chr2R_6_24760001	chr2R_24760001	RAL-804
719	chr2R	25141653	25141682	chr2R	25159343	25159372	roo	6	17690	1.5	1.0	1.2	2.7	17719	chr2R	25141653	intergenic	not near genes	chr2R	25150512	intergenic	not near genes	chr2R	25159372	intergenic	not near genes	chr2R_6_25150001	chr2R_25150001	RAL-804
728	chr3L	110224	110244	chr3L	119391	119411	roo	4	9167	1.0	3.0	2.0	1.3	9187	chr3L	110224	intergenic	not near genes	chr3L	114818	intergenic	not near genes	chr3L	119411	intergenic	not near genes	chr3L_4_110001	chr3L_110001	RAL-804
739	chr3L	925175	925210	chr3L	932601	932636	mdg1	12	7426	2.5	4.0	3.2	2.9	7461	chr3L	925175	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932636	intron	Glut1 +	chr3L_12_925001	chr3L_925001	RAL-804
741	chr3L	939777	939803	chr3L	940891	940918	jockey	12	1119	6.0	3.0	4.5	2.2	1141	chr3L	939777	intron	Glut1 +	chr3L	940348	intron	Glut1 +	chr3L	940918	intron	Glut1 +	chr3L_12_940001	chr3L_940001	RAL-804
747	chr3L	1219598	1219622	chr3L	1227331	1227354	412	5	7732	4.0	2.0	3.0	1.2	7756	chr3L	1219598	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227354	intron	mwh +	chr3L_5_1220001	chr3L_1220001	RAL-804
753	chr3L	1505999	1506033	chr3L	1513596	1513623	17.6	17	7596	3.5	4.5	4.0	3.4	7624	chr3L	1505999	intron,intron	Psa +,cue -	chr3L	1509811	intron,intron	Psa +,cue -	chr3L	1513623	intron,intron	Psa +,cue -	chr3L_17_1505001	chr3L_1505001	RAL-804
759	chr3L	2447504	2447531	chr3L	2456660	2456684	roo	5	9154	3.5	3.5	3.5	1.1	9180	chr3L	2447504	intron	CG45186 +	chr3L	2452094	intron	CG45186 +	chr3L	2456684	intron	CG45186 +	chr3L_5_2450001	chr3L_2450001	RAL-804
764	chr3L	2927837	2927867	chr3L	2936114	2936144	Tirant	8	8276	2.5	1.0	1.8	2.9	8307	chr3L	2927837	intron	Shab +	chr3L	2931990	intron	Shab +	chr3L	2936144	intron	Shab +	chr3L_8_2930001	chr3L_2930001	RAL-804
766	chr3L	3061297	3061317	chr3L	3069869	3069900	Tirant	4	8568	2.5	5.0	3.8	0.8	8603	chr3L	3061297	intron	CG32486 -	chr3L	3065598	intron	CG32486 -	chr3L	3069900	intron	CG32486 -	chr3L_4_3065001	chr3L_3065001	RAL-804
768	chr3L	3281439	3281472	chr3L	3281935	3281968	Doc	12	494	3.0	8.5	5.8	1.8	529	chr3L	3281439	intron	CG12017 +	chr3L	3281704	intron	CG12017 +	chr3L	3281968	intron	CG12017 +	chr3L_12_3280001	chr3L_3280001	RAL-804
770	chr3L	3475076	3475112	chr3L	3475520	3475555	jockey	13	444	1.0	3.5	2.2	4.1	479	chr3L	3475076	intron	CG42324 +	chr3L	3475316	intron	CG42324 +	chr3L	3475555	intron	CG42324 +	chr3L_13_3475001	chr3L_3475001	RAL-804
772	chr3L	3601296	3601331	chr3L	3606607	3606642	copia	12	5311	3.5	3.0	3.2	2.9	5346	chr3L	3601296	intron	Eip63E +	chr3L	3603969	intron	Eip63E +	chr3L	3606642	intron	Eip63E +	chr3L_12_3600001	chr3L_3600001	RAL-804
790	chr3L	4901130	4901156	chr3L	4907320	4907346	diver	7	6190	0.5	2.5	1.5	2.8	6216	chr3L	4901130	intergenic	CG13704 +	chr3L	4904238	intergenic	not near genes	chr3L	4907346	intergenic	not near genes	chr3L_7_4900001	chr3L_4900001	RAL-804
793	chr3L	5034169	5034187	chr3L	5043320	5043334	roo	5	9151	3.5	1.0	2.2	1.6	9165	chr3L	5034169	intron	Con -	chr3L	5038752	intron	Con -	chr3L	5043334	intron	Con -	chr3L_5_5035001	chr3L_5035001	RAL-804
801	chr3L	5926317	5926341	chr3L	5926506	5926531	BS	6	188	6.5	4.0	5.2	1.0	214	chr3L	5926317	intron	Vap-33B +	chr3L	5926424	intron	Vap-33B +	chr3L	5926531	intron	Vap-33B +	chr3L_6_5925001	chr3L_5925001	RAL-804
803	chr3L	6040369	6040388	chr3L	6042721	6042744	Doc	4	2355	0.0	1.5	0.8	2.2	2375	chr3L	6040369	intergenic	Jon65Aiv +	chr3L	6041556	intergenic	not near genes	chr3L	6042744	intergenic	not near genes	chr3L_4_6040001	chr3L_6040001	RAL-804
805	chr3L	6220916	6220944	chr3L	6230066	6230096	roo	8	9152	5.0	4.0	4.5	1.5	9180	chr3L	6220916	5` UTR	pncr008:3L +	chr3L	6225506	intergenic	not near genes	chr3L	6230096	intergenic	not near genes	chr3L_8_6225001	chr3L_6225001	RAL-804
810	chr3L	6855932	6855950	chr3L	6860716	6860734	Doc	5	4784	2.0	3.5	2.8	1.3	4802	chr3L	6855932	intergenic	not near genes	chr3L	6858333	intergenic	not near genes	chr3L	6860734	intergenic	not near genes	chr3L_5_6855001	chr3L_6855001	RAL-804
811	chr3L	6887523	6887550	chr3L	6895014	6895042	roo	12	7492	3.0	1.5	2.2	3.8	7519	chr3L	6887523	intergenic	not near genes	chr3L	6891282	intergenic	not near genes	chr3L	6895042	intergenic	not near genes	chr3L_12_6890001	chr3L_6890001	RAL-804
821	chr3L	7498757	7498791	chr3L	7503534	7503568	F-element	4	4777	2.5	1.5	2.0	1.3	4811	chr3L	7498757	5` UTR	CG8539 -	chr3L	7501162	intergenic	not near genes	chr3L	7503568	intergenic	not near genes	chr3L_4_7500001	chr3L_7500001	RAL-804
826	chr3L	7793711	7793745	chr3L	7800763	7800797	297	6	7052	2.5	2.5	2.5	1.7	7086	chr3L	7793711	intron	CG32369 -	chr3L	7797254	intron	CG32369 -	chr3L	7800797	intron	CG32369 -	chr3L_6_7795001	chr3L_7795001	RAL-804
827	chr3L	7886512	7886547	chr3L	7889030	7889065	Stalker4	8	2518	3.5	1.0	2.2	2.5	2553	chr3L	7886512	intron	CG32365 +	chr3L	7887788	intron	CG32365 +	chr3L	7889065	intron	CG32365 +	chr3L_8_7885001	chr3L_7885001	RAL-804
828	chr3L	7985381	7985396	chr3L	7987709	7987723	NOF	4	2328	1.5	3.5	2.5	1.1	2342	chr3L	7985381	intron	nmo +	chr3L	7986552	intron	nmo +	chr3L	7987723	intron	nmo +	chr3L_4_7985001	chr3L_7985001	RAL-804
831	chr3L	8019702	8019736	chr3L	8024113	8024152	NOF	5	4412	0.0	1.5	0.8	2.8	4450	chr3L	8019702	intron	nmo +	chr3L	8021927	intron	nmo +	chr3L	8024152	intron	nmo +	chr3L_5_8020001	chr3L_8020001	RAL-804
839	chr3L	8498301	8498328	chr3L	8505767	8505795	blood	4	7466	2.5	2.5	2.5	1.1	7494	chr3L	8498301	intron	CG43163 -	chr3L	8502048	intron	CG43163 -	chr3L	8505795	intron	CG43163 -	chr3L_4_8500001	chr3L_8500001	RAL-804
849	chr3L	9076926	9076954	chr3L	9084486	9084511	412	15	7559	5.0	4.5	4.8	2.6	7585	chr3L	9076926	exon	Tequila +	chr3L	9080718	intron	Tequila +	chr3L	9084511	exon	Tequila +	chr3L_15_9080001	chr3L_9080001	RAL-804
852	chr3L	9130557	9130581	chr3L	9134318	9134338	412	6	3760	3.5	3.5	3.5	1.3	3781	chr3L	9130557	intergenic	bol -	chr3L	9132448	intergenic	not near genes	chr3L	9134338	intergenic	Dhpr +	chr3L_6_9130001	chr3L_9130001	RAL-804
853	chr3L	9164699	9164722	chr3L	9166166	9166188	hobo	4	1467	2.0	2.0	2.0	1.3	1489	chr3L	9164699	intron	Rdl -	chr3L	9165444	intron	Rdl -	chr3L	9166188	intron	Rdl -	chr3L_4_9165001	chr3L_9165001	RAL-804
855	chr3L	9219258	9219280	chr3L	9219917	9219926	jockey	9	663	4.5	8.0	6.2	1.2	668	chr3L	9219258	intergenic	not near genes	chr3L	9219592	intergenic	not near genes	chr3L	9219926	intergenic	not near genes	chr3L_9_9215001	chr3L_9215001	RAL-804
856	chr3L	9270632	9270651	chr3L	9278387	9278400	roo	5	7753	3.0	4.5	3.8	1.0	7768	chr3L	9270632	intron	GluRIB +	chr3L	9274516	intron	GluRIB +	chr3L	9278400	exon	GluRIB +	chr3L_5_9270001	chr3L_9270001	RAL-804
859	chr3L	9443512	9443532	chr3L	9445299	9445319	S-element	4	1787	2.5	2.5	2.5	1.1	1807	chr3L	9443512	intron	CG33926 +	chr3L	9444416	intron	CG33926 +	chr3L	9445319	intron	CG33926 +	chr3L_4_9440001	chr3L_9440001	RAL-804
860	chr3L	9501708	9501734	chr3L	9502193	9502220	roo	9	486	0.5	3.5	2.0	3.0	512	chr3L	9501708	intron	path -	chr3L	9501964	intron	path -	chr3L	9502220	intron	path -	chr3L_9_9500001	chr3L_9500001	RAL-804
864	chr3L	9533759	9533779	chr3L	9541316	9541339	412	6	7559	2.5	9.5	6.0	0.9	7580	chr3L	9533759	intergenic	not near genes	chr3L	9537549	intergenic	not near genes	chr3L	9541339	intergenic	not near genes	chr3L_6_9535001	chr3L_9535001	RAL-804
865	chr3L	9571909	9571937	chr3L	9572256	9572285	jockey	7	348	1.5	2.0	1.8	2.5	376	chr3L	9571909	intron	CG42673 +	chr3L	9572097	intron	CG42673 +	chr3L	9572285	intron	CG42673 +	chr3L_7_9570001	chr3L_9570001	RAL-804
866	chr3L	9575904	9575943	chr3L	9580984	9581023	jockey	9	5080	5.0	4.0	4.5	1.6	5119	chr3L	9575904	intron	CG42673 +	chr3L	9578464	intron	CG42673 +	chr3L	9581023	intron	CG42673 +	chr3L_9_9575001	chr3L_9575001	RAL-804
869	chr3L	9929676	9929683	chr3L	9938456	9938461	roo	7	8779	5.5	6.5	6.0	1.0	8785	chr3L	9929676	intron	CG34356 +	chr3L	9934068	intron	CG34356 +	chr3L	9938461	intron	CG34356 +	chr3L_7_9930001	chr3L_9930001	RAL-804
870	chr3L	9929687	9929701	chr3L	9938452	9938481	roo	5	8776	4.0	5.5	4.8	0.9	8794	chr3L	9929687	intron	CG34356 +	chr3L	9934084	intron	CG34356 +	chr3L	9938481	intron	CG34356 +	chr3L_5_9930001	chr3L_9930001	RAL-804
879	chr3L	10414940	10414977	chr3L	10417312	10417348	Doc	12	2372	0.0	0.5	0.2	10.0	2408	chr3L	10414940	intergenic	CG12362 +	chr3L	10416144	intergenic	not near genes	chr3L	10417348	intergenic	not near genes	chr3L_12_10415001	chr3L_10415001	RAL-804
889	chr3L	11087065	11087088	chr3L	11088854	11088877	S-element	8	1789	2.0	2.5	2.2	2.5	1812	chr3L	11087065	intron	JIL-1 -	chr3L	11087971	intron	JIL-1 -	chr3L	11088877	intron	JIL-1 -	chr3L_8_11085001	chr3L_11085001	RAL-804
890	chr3L	11105296	11105307	chr3L	11107007	11107018	X-element	4	1711	6.5	3.0	4.8	0.7	1722	chr3L	11105296	intergenic	not near genes	chr3L	11106157	intergenic	not near genes	chr3L	11107018	3` UTR	CG32073 -	chr3L_4_11105001	chr3L_11105001	RAL-804
894	chr3L	11264464	11264491	chr3L	11271416	11271443	17.6	7	6952	5.5	1.5	3.5	1.6	6979	chr3L	11264464	intergenic	not near genes	chr3L	11267954	intergenic	not near genes	chr3L	11271443	intergenic	not near genes	chr3L_7_11265001	chr3L_11265001	RAL-804
895	chr3L	11329692	11329724	chr3L	11332896	11332921	jockey	9	3201	3.0	3.0	3.0	2.2	3229	chr3L	11329692	intergenic	not near genes	chr3L	11331306	intergenic	not near genes	chr3L	11332921	intergenic	not near genes	chr3L_9_11330001	chr3L_11330001	RAL-804
903	chr3L	11723081	11723108	chr3L	11727876	11727903	Doc	8	4795	5.0	2.5	3.8	1.7	4822	chr3L	11723081	3` UTR	Bmcp +	chr3L	11725492	intron	Bmcp +	chr3L	11727903	3` UTR	Bmcp +	chr3L_8_11725001	chr3L_11725001	RAL-804
928	chr3L	12874945	12874961	chr3L	12877236	12877253	jockey	5	2292	2.5	2.0	2.2	1.6	2308	chr3L	12874945	intergenic	not near genes	chr3L	12876099	intergenic	not near genes	chr3L	12877253	intergenic	not near genes	chr3L_5_12875001	chr3L_12875001	RAL-804
932	chr3L	12919278	12919287	chr3L	12924749	12924760	Rt1c	5	5472	10.5	3.5	7.0	0.6	5482	chr3L	12919278	intergenic	not near genes	chr3L	12922019	intergenic	not near genes	chr3L	12924760	intergenic	not near genes	chr3L_5_12920001	chr3L_12920001	RAL-804
933	chr3L	12919288	12919309	chr3L	12924747	12924759	Rt1c	14	5467	4.5	3.5	4.0	2.8	5471	chr3L	12919288	intergenic	not near genes	chr3L	12922024	intergenic	not near genes	chr3L	12924759	intergenic	not near genes	chr3L_14_12920001	chr3L_12920001	RAL-804
935	chr3L	12957788	12957810	chr3L	12962268	12962292	copia	6	4482	3.0	4.0	3.5	1.3	4504	chr3L	12957788	intergenic	not near genes	chr3L	12960040	intergenic	not near genes	chr3L	12962292	intergenic	not near genes	chr3L_6_12960001	chr3L_12960001	RAL-804
944	chr3L	13525156	13525186	chr3L	13532951	13532982	roo	5	7796	3.5	5.0	4.2	1.0	7826	chr3L	13525156	intergenic	not near genes	chr3L	13529069	intergenic	not near genes	chr3L	13532982	intergenic	not near genes	chr3L_5_13525001	chr3L_13525001	RAL-804
947	chr3L	13804557	13804577	chr3L	13822843	13822863	roo	4	18286	0.5	5.5	3.0	1.0	18306	chr3L	13804557	intergenic	not near genes	chr3L	13813710	intergenic	not near genes	chr3L	13822863	intergenic	not near genes	chr3L_4_13810001	chr3L_13810001	RAL-804
953	chr3L	14245567	14245589	chr3L	14245661	14245683	1360	6	94	4.5	1.5	3.0	1.5	116	chr3L	14245567	3` UTR	CR44561 -	chr3L	14245625	3` UTR	CR44561 -	chr3L	14245683	3` UTR	CR44561 -	chr3L_6_14245001	chr3L_14245001	RAL-804
955	chr3L	14295986	14296002	chr3L	14296472	14296486	roo	6	486	4.0	1.0	2.5	1.7	500	chr3L	14295986	intron	fz +	chr3L	14296236	intron	fz +	chr3L	14296486	intron	fz +	chr3L_6_14295001	chr3L_14295001	RAL-804
956	chr3L	14296003	14296014	chr3L	14296471	14296500	roo	6	482	5.0	1.0	3.0	1.5	497	chr3L	14296003	intron	fz +	chr3L	14296252	intron	fz +	chr3L	14296500	intron	fz +	chr3L_6_14295001	chr3L_14295001	RAL-804
958	chr3L	14312028	14312056	chr3L	14316834	14316849	X-element	6	4804	1.0	2.0	1.5	2.4	4821	chr3L	14312028	exon	fz +	chr3L	14314438	intron	fz +	chr3L	14316849	intron	fz +	chr3L_6_14310001	chr3L_14310001	RAL-804
962	chr3L	14468452	14468470	chr3L	14473658	14473676	copia	5	5206	2.5	1.5	2.0	1.7	5224	chr3L	14468452	intron	bbg -	chr3L	14471064	intron	bbg -	chr3L	14473676	intron	bbg -	chr3L_5_14470001	chr3L_14470001	RAL-804
967	chr3L	14721185	14721206	chr3L	14723026	14723035	Rt1c	8	1839	4.5	3.0	3.8	1.7	1850	chr3L	14721185	intron	ome +	chr3L	14722110	intron	ome +	chr3L	14723035	intron	ome +	chr3L_8_14720001	chr3L_14720001	RAL-804
970	chr3L	15085051	15085074	chr3L	15086217	15086240	1360	6	1165	1.5	3.0	2.2	1.9	1189	chr3L	15085051	intron	cp309 -	chr3L	15085646	intron	cp309 -	chr3L	15086240	intron	cp309 -	chr3L_6_15085001	chr3L_15085001	RAL-804
977	chr3L	15423762	15423776	chr3L	15426606	15426620	opus	7	2844	2.0	3.0	2.5	2.0	2858	chr3L	15423762	intergenic	not near genes	chr3L	15425191	intergenic	not near genes	chr3L	15426620	intergenic	not near genes	chr3L_7_15425001	chr3L_15425001	RAL-804
983	chr3L	16184104	16184135	chr3L	16188923	16188954	X-element	13	4819	2.0	0.5	1.2	5.9	4850	chr3L	16184104	intergenic	not near genes	chr3L	16186529	intergenic	not near genes	chr3L	16188954	intergenic	not near genes	chr3L_13_16185001	chr3L_16185001	RAL-804
989	chr3L	16443852	16443874	chr3L	16446192	16446214	Doc	7	2339	2.5	4.0	3.2	1.7	2362	chr3L	16443852	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445033	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446214	intron,intron	CG33158 +,dsx-c73A -	chr3L_7_16445001	chr3L_16445001	RAL-804
990	chr3L	16493975	16494003	chr3L	16494492	16494510	jockey	9	514	3.5	3.5	3.5	2.0	535	chr3L	16493975	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494242	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494510	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_9_16490001	chr3L_16490001	RAL-804
992	chr3L	16616510	16616538	chr3L	16621838	16621866	297	6	5328	2.0	3.5	2.8	1.6	5356	chr3L	16616510	3` UTR	Abl -	chr3L	16619188	3` UTR	Abl -	chr3L	16621866	3` UTR	Abl -	chr3L_6_16615001	chr3L_16615001	RAL-804
996	chr3L	16945730	16945759	chr3L	16954878	16954911	roo	11	9150	5.5	3.5	4.5	2.0	9181	chr3L	16945730	exon	Obp73a +	chr3L	16950320	intergenic	not near genes	chr3L	16954911	5` UTR	Nc73EF +	chr3L_11_16950001	chr3L_16950001	RAL-804
998	chr3L	17085002	17085034	chr3L	17094151	17094177	roo	5	9148	4.5	2.0	3.2	1.2	9175	chr3L	17085002	intron	Rbp6 -	chr3L	17089590	intron	Rbp6 -	chr3L	17094177	intron	Rbp6 -	chr3L_5_17085001	chr3L_17085001	RAL-804
1006	chr3L	17516980	17517001	chr3L	17524538	17524559	412	7	7557	3.5	4.5	4.0	1.4	7579	chr3L	17516980	intron	CG7564 +	chr3L	17520770	intron	CG7564 +	chr3L	17524559	3` UTR	CG7564 +	chr3L_7_17520001	chr3L_17520001	RAL-804
1007	chr3L	17517002	17517013	chr3L	17524536	17524571	412	6	7549	2.5	3.5	3.0	1.5	7569	chr3L	17517002	intron	CG7564 +	chr3L	17520786	intron	CG7564 +	chr3L	17524571	3` UTR	CG7564 +	chr3L_6_17520001	chr3L_17520001	RAL-804
1013	chr3L	17918373	17918404	chr3L	17921176	17921207	opus	7	2802	2.5	2.0	2.2	2.2	2834	chr3L	17918373	intergenic	not near genes	chr3L	17919790	intergenic	not near genes	chr3L	17921207	intergenic	not near genes	chr3L_7_17915001	chr3L_17915001	RAL-804
1029	chr3L	18528626	18528652	chr3L	18537787	18537813	roo	5	9161	2.5	2.5	2.5	1.4	9187	chr3L	18528626	intergenic	not near genes	chr3L	18533220	intergenic	not near genes	chr3L	18537813	intergenic	not near genes	chr3L_5_18530001	chr3L_18530001	RAL-804
1035	chr3L	18772408	18772439	chr3L	18781089	18781120	roo	13	8681	2.5	3.5	3.0	3.2	8712	chr3L	18772408	intron	ftz-f1 -	chr3L	18776764	intron	ftz-f1 -	chr3L	18781120	intron	ftz-f1 -	chr3L_13_18775001	chr3L_18775001	RAL-804
1037	chr3L	18833780	18833805	chr3L	18834943	18834969	1360	4	1164	4.0	2.0	3.0	1.0	1189	chr3L	18833780	intron	Indy -	chr3L	18834374	intron	Indy -	chr3L	18834969	intron	Indy -	chr3L_4_18830001	chr3L_18830001	RAL-804
1041	chr3L	19008838	19008872	chr3L	19009176	19009210	jockey	8	338	2.0	4.5	3.2	1.9	372	chr3L	19008838	intron	nkd -	chr3L	19009024	intron	nkd -	chr3L	19009210	intron	nkd -	chr3L_8_19005001	chr3L_19005001	RAL-804
1042	chr3L	19208059	19208078	chr3L	19209433	19209452	Doc	10	1374	3.5	3.0	3.2	2.4	1393	chr3L	19208059	intron	fz2 -	chr3L	19208756	intron	fz2 -	chr3L	19209452	intron	fz2 -	chr3L_10_19205001	chr3L_19205001	RAL-804
1048	chr3L	19848502	19848522	chr3L	19857692	19857712	roo	5	9190	3.5	7.5	5.5	0.8	9210	chr3L	19848502	intron	Papss +	chr3L	19853107	intron	Papss +	chr3L	19857712	intron	Papss +	chr3L_5_19850001	chr3L_19850001	RAL-804
1049	chr3L	19861821	19861853	chr3L	19863609	19863641	S-element	9	1787	1.5	2.0	1.8	3.2	1820	chr3L	19861821	5` UTR	CR45433 +	chr3L	19862731	intergenic	not near genes	chr3L	19863641	intergenic	not near genes	chr3L_9_19860001	chr3L_19860001	RAL-804
1056	chr3L	20257354	20257360	chr3L	20258474	20258480	pogo	7	1120	3.0	3.0	3.0	1.8	1126	chr3L	20257354	intron	rdgC +	chr3L	20257917	intron	rdgC +	chr3L	20258480	intron	rdgC +	chr3L_7_20255001	chr3L_20255001	RAL-804
1060	chr3L	20476759	20476785	chr3L	20484358	20484384	springer	4	7599	0.0	0.5	0.2	3.3	7625	chr3L	20476759	3` UTR	isoQC +	chr3L	20480572	intergenic	not near genes	chr3L	20484384	3` UTR	ZnT77C -	chr3L_4_20480001	chr3L_20480001	RAL-804
1065	chr3L	21014913	21014948	chr3L	21023394	21023422	Tirant	11	8473	1.5	1.0	1.2	5.0	8509	chr3L	21014913	intron	skd -	chr3L	21019168	intron	skd -	chr3L	21023422	intron	skd -	chr3L_11_21015001	chr3L_21015001	RAL-804
1067	chr3L	21151878	21151894	chr3L	21156962	21156978	flea	6	5084	3.0	3.5	3.2	1.4	5100	chr3L	21151878	intron	Ac78C -	chr3L	21154428	intron	Ac78C -	chr3L	21156978	intron	Ac78C -	chr3L_6_21150001	chr3L_21150001	RAL-804
1070	chr3L	21306148	21306179	chr3L	21315307	21315338	roo	4	9159	2.0	0.5	1.2	1.8	9190	chr3L	21306148	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310743	intron	Pc -	chr3L	21315338	3` UTR	Pc -	chr3L_4_21310001	chr3L_21310001	RAL-804
1072	chr3L	21498840	21498855	chr3L	21500476	21500491	1360	4	1636	5.0	5.0	5.0	0.7	1651	chr3L	21498840	intron	Glg1 -	chr3L	21499666	intron	Glg1 -	chr3L	21500491	intron	Glg1 -	chr3L_4_21495001	chr3L_21495001	RAL-804
1075	chr3L	22099676	22099707	chr3L	22105862	22105893	3S18	7	6186	3.5	1.5	2.5	2.0	6217	chr3L	22099676	intergenic	not near genes	chr3L	22102784	intergenic	not near genes	chr3L	22105893	intergenic	not near genes	chr3L_7_22100001	chr3L_22100001	RAL-804
1092	chr3L	22555770	22555773	chr3L	22563240	22563243	blood	4	7470	5.0	0.0	2.5	1.1	7473	chr3L	22555770	intergenic	not near genes	chr3L	22559506	intergenic	not near genes	chr3L	22563243	intergenic	not near genes	chr3L_4_22555001	chr3L_22555001	RAL-804
1093	chr3L	22555786	22555802	chr3L	22563239	22563272	blood	5	7462	1.5	0.0	0.8	2.8	7486	chr3L	22555786	intergenic	not near genes	chr3L	22559529	intergenic	not near genes	chr3L	22563272	intergenic	not near genes	chr3L_5_22555001	chr3L_22555001	RAL-804
1094	chr3L	22577619	22577630	chr3L	22582407	22582414	Doc	5	4787	3.5	3.5	3.5	1.1	4795	chr3L	22577619	intergenic	not near genes	chr3L	22580016	intergenic	not near genes	chr3L	22582414	3` UTR	CG14459 -	chr3L_5_22580001	chr3L_22580001	RAL-804
1095	chr3L	22577635	22577649	chr3L	22582403	22582437	Doc	7	4785	2.0	3.0	2.5	2.0	4802	chr3L	22577635	intergenic	not near genes	chr3L	22580036	intergenic	not near genes	chr3L	22582437	3` UTR	CG14459 -	chr3L_7_22580001	chr3L_22580001	RAL-804
1097	chr3L	22617190	22617221	chr3L	22624642	22624673	blood	12	7451	3.5	1.0	2.2	3.8	7483	chr3L	22617190	intron	CG14459 -	chr3L	22620932	intron	CG14459 -	chr3L	22624673	intron	CG14459 -	chr3L_12_22620001	chr3L_22620001	RAL-804
1099	chr3L	22761388	22761414	chr3L	22766822	22766848	Ivk	4	5434	1.0	3.0	2.0	1.3	5460	chr3L	22761388	intron	SPoCk +	chr3L	22764118	intron	SPoCk +	chr3L	22766848	intron	SPoCk +	chr3L_4_22760001	chr3L_22760001	RAL-804
1101	chr3L	22865990	22866003	chr3L	22867123	22867136	Doc	6	1133	4.5	1.5	3.0	1.5	1146	chr3L	22865990	intron	CG33170 +	chr3L	22866563	intron	CG33170 +	chr3L	22867136	intron	CG33170 +	chr3L_6_22865001	chr3L_22865001	RAL-804
1103	chr3L	22989862	22989893	chr3L	22996836	22996867	297	6	6973	2.5	1.0	1.8	2.1	7005	chr3L	22989862	intergenic	not near genes	chr3L	22993364	intergenic	not near genes	chr3L	22996867	intergenic	not near genes	chr3L_6_22990001	chr3L_22990001	RAL-804
1115	chr3R	4206069	4206098	chr3R	4211644	4211673	mdg3	4	5573	2.5	1.0	1.8	1.4	5604	chr3R	4206069	intron	CG14636 -	chr3R	4208871	intron	CG14636 -	chr3R	4211673	intron	CG14636 -	chr3R_4_4205001	chr3R_4205001	RAL-804
1116	chr3R	4609545	4609580	chr3R	4610709	4610744	1360	9	1164	5.5	3.5	4.5	1.6	1199	chr3R	4609545	intergenic	not near genes	chr3R	4610144	intergenic	not near genes	chr3R	4610744	intergenic	not near genes	chr3R_9_4610001	chr3R_4610001	RAL-804
1119	chr3R	4753242	4753272	chr3R	4757545	4757571	F-element	12	4302	4.5	2.5	3.5	2.7	4329	chr3R	4753242	intron,intron	atms +,CG44098 -	chr3R	4755406	intron,intron	atms +,CG44098 -	chr3R	4757571	intron,exon	atms +,CG44098 -	chr3R_12_4755001	chr3R_4755001	RAL-804
1124	chr3R	5045849	5045873	chr3R	5052951	5052976	HMS-Beagle	6	7102	3.0	1.0	2.0	2.0	7127	chr3R	5045849	intron	CR43635 -	chr3R	5049412	intergenic	not near genes	chr3R	5052976	intergenic	CR45588 -	chr3R_6_5045001	chr3R_5045001	RAL-804
1125	chr3R	5067985	5068007	chr3R	5073498	5073524	mdg3	8	5516	2.5	2.0	2.2	2.5	5539	chr3R	5067985	intergenic	not near genes	chr3R	5070754	intergenic	not near genes	chr3R	5073524	intergenic	not near genes	chr3R_8_5070001	chr3R_5070001	RAL-804
1129	chr3R	5338397	5338429	chr3R	5343574	5343606	Rt1c	12	5176	1.5	3.5	2.5	3.4	5209	chr3R	5338397	intron	mtd -	chr3R	5341002	intron	mtd -	chr3R	5343606	intron	mtd -	chr3R_12_5340001	chr3R_5340001	RAL-804
1131	chr3R	5445969	5445992	chr3R	5452429	5452452	Burdock	7	6460	1.0	3.5	2.2	2.2	6483	chr3R	5445969	intron	CG14669 +	chr3R	5449210	intron	CG14669 +	chr3R	5452452	intron	CG14669 +	chr3R_7_5445001	chr3R_5445001	RAL-804
1134	chr3R	5746016	5746045	chr3R	5746257	5746286	pogo	6	241	2.5	2.5	2.5	1.7	270	chr3R	5746016	3` UTR	Madm +	chr3R	5746151	3` UTR	Madm +	chr3R	5746286	3` UTR	Madm +	chr3R_6_5745001	chr3R_5745001	RAL-804
1136	chr3R	5809121	5809140	chr3R	5809371	5809390	pogo	9	250	3.5	1.0	2.2	2.8	269	chr3R	5809121	3` UTR	CG11000 +	chr3R	5809256	3` UTR	CG11000 +	chr3R	5809390	3` UTR	CG11000 +	chr3R_9_5805001	chr3R_5805001	RAL-804
1137	chr3R	5822377	5822409	chr3R	5823544	5823575	1360	11	1167	3.5	3.5	3.5	2.4	1198	chr3R	5822377	3` UTR	CG2023 -	chr3R	5822976	3` UTR	CG2023 -	chr3R	5823575	3` UTR	CG2023 -	chr3R_11_5820001	chr3R_5820001	RAL-804
1138	chr3R	5927560	5927582	chr3R	5927799	5927821	pogo	6	239	3.5	3.5	3.5	1.3	261	chr3R	5927560	intron	CG34113 -	chr3R	5927690	intron	CG34113 -	chr3R	5927821	intron	CG34113 -	chr3R_6_5925001	chr3R_5925001	RAL-804
1139	chr3R	6015965	6015978	chr3R	6024446	6024459	Tirant	5	8480	4.0	2.0	3.0	1.2	8494	chr3R	6015965	intergenic	not near genes	chr3R	6020212	intergenic	not near genes	chr3R	6024459	intergenic	not near genes	chr3R_5_6020001	chr3R_6020001	RAL-804
1140	chr3R	6015985	6015995	chr3R	6024443	6024476	Tirant	5	8476	1.5	2.0	1.8	1.8	8491	chr3R	6015985	intergenic	not near genes	chr3R	6020230	intergenic	not near genes	chr3R	6024476	intergenic	not near genes	chr3R_5_6020001	chr3R_6020001	RAL-804
1142	chr3R	6175173	6175204	chr3R	6182445	6182476	HMS-Beagle2	13	7270	1.5	3.0	2.2	4.1	7303	chr3R	6175173	intergenic	Osi1 +	chr3R	6178824	intron	CR45194 +	chr3R	6182476	intergenic	CR45194 +	chr3R_13_6175001	chr3R_6175001	RAL-804
1148	chr3R	6737505	6737529	chr3R	6739284	6739316	Doc	9	1784	2.5	0.5	1.5	3.6	1811	chr3R	6737505	intron	pb -	chr3R	6738410	intron	pb -	chr3R	6739316	intron	pb -	chr3R_9_6735001	chr3R_6735001	RAL-804
1164	chr3R	7729466	7729496	chr3R	7737404	7737434	Stalker2	7	7937	2.0	3.0	2.5	2.0	7968	chr3R	7729466	intergenic	not near genes	chr3R	7733450	intergenic	not near genes	chr3R	7737434	intergenic	not near genes	chr3R_7_7730001	chr3R_7730001	RAL-804
1166	chr3R	7849657	7849671	chr3R	7850824	7850838	1360	5	1166	2.5	5.0	3.8	1.0	1181	chr3R	7849657	intron	CG34384 +	chr3R	7850248	intron	CG34384 +	chr3R	7850838	intron	CG34384 +	chr3R_5_7850001	chr3R_7850001	RAL-804
1170	chr3R	8094411	8094441	chr3R	8099716	8099743	Transpac	9	5305	3.0	4.0	3.5	2.0	5332	chr3R	8094411	intron	CG7900 +	chr3R	8097077	intron	CG7900 +	chr3R	8099743	intron	CG7900 +	chr3R_9_8095001	chr3R_8095001	RAL-804
1173	chr3R	8403009	8403036	chr3R	8412175	8412202	roo	11	9165	4.0	3.0	3.5	2.4	9193	chr3R	8403009	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412202	intron	CG45263 -	chr3R_11_8405001	chr3R_8405001	RAL-804
1178	chr3R	8570477	8570497	chr3R	8575112	8575133	HMS-Beagle	8	4636	2.5	1.0	1.8	2.9	4656	chr3R	8570477	intergenic	not near genes	chr3R	8572805	intergenic	not near genes	chr3R	8575133	intergenic	not near genes	chr3R_8_8570001	chr3R_8570001	RAL-804
1179	chr3R	8601776	8601781	chr3R	8610926	8610934	roo	4	9152	4.5	4.0	4.2	0.8	9158	chr3R	8601776	intron	5-HT2B +	chr3R	8606355	intron	5-HT2B +	chr3R	8610934	intron	5-HT2B +	chr3R_4_8605001	chr3R_8605001	RAL-804
1180	chr3R	8601782	8601798	chr3R	8610917	8610950	roo	9	9151	2.5	3.0	2.8	2.4	9168	chr3R	8601782	intron	5-HT2B +	chr3R	8606366	intron	5-HT2B +	chr3R	8610950	intron	5-HT2B +	chr3R_9_8605001	chr3R_8605001	RAL-804
1183	chr3R	8707363	8707384	chr3R	8709803	8709825	jockey	10	2441	4.0	4.0	4.0	2.0	2462	chr3R	8707363	intergenic	not near genes	chr3R	8708594	intergenic	not near genes	chr3R	8709825	intergenic	not near genes	chr3R_10_8705001	chr3R_8705001	RAL-804
1187	chr3R	8894877	8894902	chr3R	8896033	8896055	1360	6	1155	1.0	2.0	1.5	2.4	1178	chr3R	8894877	intron	pyd -	chr3R	8895466	intron	pyd -	chr3R	8896055	intron	pyd -	chr3R_6_8895001	chr3R_8895001	RAL-804
1194	chr3R	9319580	9319595	chr3R	9320015	9320030	jockey	5	435	3.0	2.0	2.5	1.4	450	chr3R	9319580	intron	CG8861 -	chr3R	9319805	intron	CG8861 -	chr3R	9320030	intron	CG8861 -	chr3R_5_9315001	chr3R_9315001	RAL-804
1195	chr3R	9319601	9319609	chr3R	9320007	9320044	jockey	4	428	2.5	1.5	2.0	1.3	443	chr3R	9319601	intron	CG8861 -	chr3R	9319822	intron	CG8861 -	chr3R	9320044	intron	CG8861 -	chr3R_4_9315001	chr3R_9315001	RAL-804
1204	chr3R	10231784	10231814	chr3R	10237361	10237391	mdg3	4	5577	0.5	1.5	1.0	2.0	5607	chr3R	10231784	intron	CG42795 +	chr3R	10234588	intron	CG42795 +	chr3R	10237391	intron	CG42795 +	chr3R_4_10230001	chr3R_10230001	RAL-804
1212	chr3R	10804186	10804207	chr3R	10811718	10811737	17.6	4	7531	0.0	3.0	1.5	1.6	7551	chr3R	10804186	intergenic	CG14692 -	chr3R	10807962	intergenic	not near genes	chr3R	10811737	3` UTR	CG14693 -	chr3R_4_10805001	chr3R_10805001	RAL-804
1215	chr3R	11379238	11379249	chr3R	11388393	11388404	roo	4	9155	4.0	2.5	3.2	1.0	9166	chr3R	11379238	intron	pros +	chr3R	11383821	intron	pros +	chr3R	11388404	intron	pros +	chr3R_4_11380001	chr3R_11380001	RAL-804
1221	chr3R	11841067	11841096	chr3R	11846258	11846284	BS	8	5186	4.5	4.0	4.2	1.5	5217	chr3R	11841067	intron	CG6959 -	chr3R	11843676	intron	CG6959 -	chr3R	11846284	intron	CG6959 -	chr3R_8_11840001	chr3R_11840001	RAL-804
1223	chr3R	12022886	12022905	chr3R	12025063	12025082	pogo	8	2176	3.0	3.0	3.0	2.0	2196	chr3R	12022886	intergenic	not near genes	chr3R	12023984	intergenic	not near genes	chr3R	12025082	intergenic	not near genes	chr3R_8_12020001	chr3R_12020001	RAL-804
1240	chr3R	12920167	12920179	chr3R	12925370	12925382	copia	5	5202	2.0	6.0	4.0	1.0	5215	chr3R	12920167	intron	beat-Vb +	chr3R	12922774	intron	beat-Vb +	chr3R	12925382	intron	beat-Vb +	chr3R_5_12920001	chr3R_12920001	RAL-804
1249	chr3R	13143035	13143066	chr3R	13148612	13148642	mdg3	9	5575	3.0	5.5	4.2	1.7	5607	chr3R	13143035	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145838	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148642	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_9_13145001	chr3R_13145001	RAL-804
1275	chr3R	14194426	14194456	chr3R	14203575	14203605	roo	16	9148	4.5	1.5	3.0	4.0	9179	chr3R	14194426	intron	Dop1R1 -	chr3R	14199016	intron	Dop1R1 -	chr3R	14203605	intron	Dop1R1 -	chr3R_16_14195001	chr3R_14195001	RAL-804
1276	chr3R	14246395	14246415	chr3R	14247885	14247910	jockey	7	1493	3.5	5.5	4.5	1.3	1515	chr3R	14246395	intergenic	not near genes	chr3R	14247152	intergenic	not near genes	chr3R	14247910	intergenic	not near genes	chr3R_7_14245001	chr3R_14245001	RAL-804
1286	chr3R	15059277	15059481	chr3R	15059471	15059568	BS	6	105	0.0	0.0	0.0	6.0	291	chr3R	15059277	intron	dpr9 -	chr3R	15059422	intron	dpr9 -	chr3R	15059568	intron	dpr9 -	chr3R_6_15055001	chr3R_15055001	RAL-804
1287	chr3R	15132062	15132087	chr3R	15135112	15135147	Juan	10	3058	4.5	7.5	6.0	1.4	3085	chr3R	15132062	intergenic	CG42788 -	chr3R	15133604	intergenic	not near genes	chr3R	15135147	3` UTR	CG6912 -	chr3R_10_15130001	chr3R_15130001	RAL-804
1294	chr3R	15601164	15601196	chr3R	15608686	15608718	412	16	7521	4.0	4.0	4.0	3.2	7554	chr3R	15601164	intergenic	not near genes	chr3R	15604941	intergenic	not near genes	chr3R	15608718	intergenic	not near genes	chr3R_16_15600001	chr3R_15600001	RAL-804
1295	chr3R	15618752	15618760	chr3R	15626226	15626234	blood	5	7473	1.0	7.0	4.0	1.0	7482	chr3R	15618752	intergenic	not near genes	chr3R	15622493	intergenic	not near genes	chr3R	15626234	intergenic	not near genes	chr3R_5_15620001	chr3R_15620001	RAL-804
1307	chr3R	16756332	16756349	chr3R	16762510	16762539	diver	6	6187	2.0	2.5	2.2	1.9	6207	chr3R	16756332	intron	bxd -	chr3R	16759436	intron	bxd -	chr3R	16762539	intron	bxd -	chr3R_6_16755001	chr3R_16755001	RAL-804
1313	chr3R	17346701	17346715	chr3R	17348264	17348278	F-element	5	1563	0.5	1.0	0.8	2.8	1577	chr3R	17346701	intron	beat-IIa -	chr3R	17347490	intron	beat-IIa -	chr3R	17348278	intron	beat-IIa -	chr3R_5_17345001	chr3R_17345001	RAL-804
1323	chr3R	17638318	17638342	chr3R	17638804	17638828	roo	5	486	2.5	3.0	2.8	1.3	510	chr3R	17638318	intron	CG43175 +	chr3R	17638573	intron	CG43175 +	chr3R	17638828	intron,intron	CG43175 +,CR45222 +	chr3R_5_17635001	chr3R_17635001	RAL-804
1328	chr3R	17925852	17925886	chr3R	17927319	17927353	hobo	11	1466	3.0	7.0	5.0	1.8	1501	chr3R	17925852	intron	cpo +	chr3R	17926602	intron	cpo +	chr3R	17927353	intron	cpo +	chr3R_11_17925001	chr3R_17925001	RAL-804
1339	chr3R	18606519	18606534	chr3R	18610741	18610755	F-element	5	4222	1.5	0.5	1.0	2.5	4236	chr3R	18606519	intron,intron	qin +,CG14304 -	chr3R	18608637	intron,intron	qin +,CG14304 -	chr3R	18610755	intron,intron	qin +,CG14304 -	chr3R_5_18605001	chr3R_18605001	RAL-804
1357	chr3R	20109540	20109567	chr3R	20114746	20114773	copia	8	5206	1.0	3.0	2.0	2.7	5233	chr3R	20109540	intergenic	not near genes	chr3R	20112156	intergenic	not near genes	chr3R	20114773	intergenic	CG10887 +	chr3R_8_20110001	chr3R_20110001	RAL-804
1359	chr3R	20156698	20156721	chr3R	20165867	20165891	roo	5	9169	3.0	3.0	3.0	1.2	9193	chr3R	20156698	intergenic	not near genes	chr3R	20161294	intergenic	not near genes	chr3R	20165891	intergenic	not near genes	chr3R_5_20160001	chr3R_20160001	RAL-804
1362	chr3R	20266531	20266544	chr3R	20273002	20273015	Burdock	8	6471	0.0	5.5	2.8	2.1	6484	chr3R	20266531	intron	cic +	chr3R	20269773	intron	cic +	chr3R	20273015	intron	cic +	chr3R_8_20265001	chr3R_20265001	RAL-804
1381	chr3R	21141684	21141705	chr3R	21150164	21150186	Tirant	4	8481	0.5	4.5	2.5	1.1	8502	chr3R	21141684	intron	SNF4Agamma +	chr3R	21145935	intron	SNF4Agamma +	chr3R	21150186	intron	SNF4Agamma +	chr3R_4_21145001	chr3R_21145001	RAL-804
1387	chr3R	21609002	21609042	chr3R	21611636	21611655	NOF	14	2630	1.0	3.5	2.2	4.4	2653	chr3R	21609002	intron	InR -	chr3R	21610328	intron	InR -	chr3R	21611655	intron	InR -	chr3R_14_21610001	chr3R_21610001	RAL-804
1390	chr3R	21761127	21761154	chr3R	21768511	21768546	mdg1	6	7387	3.5	4.0	3.8	1.2	7419	chr3R	21761127	exon	CG42335 +	chr3R	21764836	intron	CG42335 +	chr3R	21768546	exon	CG42335 +	chr3R_6_21760001	chr3R_21760001	RAL-804
1398	chr3R	22239489	22239503	chr3R	22248549	22248563	roo	6	9060	4.5	0.0	2.2	1.9	9074	chr3R	22239489	intron	SKIP +	chr3R	22244026	intron	SKIP +	chr3R	22248563	intron	SKIP +	chr3R_6_22240001	chr3R_22240001	RAL-804
1403	chr3R	22450547	22450577	chr3R	22453182	22453217	NOF	14	2638	2.0	3.5	2.8	3.7	2670	chr3R	22450547	intron	CG34376 +	chr3R	22451882	intron	CG34376 +	chr3R	22453217	intron	CG34376 +	chr3R_14_22450001	chr3R_22450001	RAL-804
1424	chr3R	23558401	23558424	chr3R	23560182	23560205	Bari1	5	1781	1.5	2.0	1.8	1.8	1804	chr3R	23558401	intron	beat-IV +	chr3R	23559303	intron	beat-IV +	chr3R	23560205	intron	beat-IV +	chr3R_5_23555001	chr3R_23555001	RAL-804
1428	chr3R	23684696	23684730	chr3R	23685180	23685195	roo	7	473	1.5	2.0	1.8	2.5	499	chr3R	23684696	exon	CG18754 +	chr3R	23684946	intron	CG18754 +	chr3R	23685195	exon	CG18754 +	chr3R_7_23680001	chr3R_23680001	RAL-804
1436	chr3R	24072085	24072096	chr3R	24072523	24072534	jockey	4	437	11.5	4.5	8.0	0.4	449	chr3R	24072085	intron	4EHP -	chr3R	24072310	intron	4EHP -	chr3R	24072534	intron	4EHP -	chr3R_4_24070001	chr3R_24070001	RAL-804
1437	chr3R	24072097	24072115	chr3R	24072521	24072547	jockey	10	434	5.5	4.0	4.8	1.7	450	chr3R	24072097	intron	4EHP -	chr3R	24072322	intron	4EHP -	chr3R	24072547	intron	4EHP -	chr3R_10_24070001	chr3R_24070001	RAL-804
1438	chr3R	24076917	24076949	chr3R	24078383	24078400	hobo	11	1465	5.0	4.0	4.5	2.0	1483	chr3R	24076917	intron	4EHP -	chr3R	24077658	intron	4EHP -	chr3R	24078400	intron	4EHP -	chr3R_11_24075001	chr3R_24075001	RAL-804
1439	chr3R	24207213	24207246	chr3R	24212289	24212322	flea	8	5075	4.5	5.5	5.0	1.3	5109	chr3R	24207213	intron	twin -	chr3R	24209768	intron	twin -	chr3R	24212322	intron	twin -	chr3R_8_24205001	chr3R_24205001	RAL-804
1448	chr3R	24730098	24730115	chr3R	24732476	24732492	Doc	6	2377	5.0	0.0	2.5	1.7	2394	chr3R	24730098	intron	tok +	chr3R	24731295	intron	tok +	chr3R	24732492	intron	tok +	chr3R_6_24730001	chr3R_24730001	RAL-804
1450	chr3R	24927125	24927153	chr3R	24931916	24931941	Doc	5	4790	2.0	3.5	2.8	1.3	4816	chr3R	24927125	intergenic	Trf4-2 +	chr3R	24929533	intergenic	not near genes	chr3R	24931941	intergenic	CG11771 +	chr3R_5_24925001	chr3R_24925001	RAL-804
1455	chr3R	25725842	25725859	chr3R	25735002	25735019	roo	5	9160	0.0	1.0	0.5	3.3	9177	chr3R	25725842	intron	LpR2 -	chr3R	25730430	intron	LpR2 -	chr3R	25735019	intron	LpR2 -	chr3R_5_25730001	chr3R_25730001	RAL-804
1459	chr3R	25832695	25832721	chr3R	25841876	25841902	roo	12	9180	5.0	4.5	4.8	2.1	9207	chr3R	25832695	exon	alpha4GT2 +	chr3R	25837298	intron	alpha4GT2 +	chr3R	25841902	exon	alpha4GT2 +	chr3R_12_25835001	chr3R_25835001	RAL-804
1464	chr3R	26108826	26108843	chr3R	26117409	26117416	Tirant	5	8580	8.5	0.0	4.2	1.0	8590	chr3R	26108826	5` UTR	CG31324 +	chr3R	26113121	intron	CG31324 +	chr3R	26117416	intron	CG31324 +	chr3R_5_26110001	chr3R_26110001	RAL-804
1472	chr3R	26376324	26376356	chr3R	26385484	26385515	roo	9	9159	1.0	1.5	1.2	4.1	9191	chr3R	26376324	intergenic	not near genes	chr3R	26380920	intergenic	not near genes	chr3R	26385515	intergenic	not near genes	chr3R_9_26380001	chr3R_26380001	RAL-804
1475	chr3R	26558348	26558361	chr3R	26565642	26565668	Stalker4	8	7304	0.5	3.0	1.8	2.9	7320	chr3R	26558348	intron	scrib +	chr3R	26562008	intron	scrib +	chr3R	26565668	intron	scrib +	chr3R_8_26560001	chr3R_26560001	RAL-804
1481	chr3R	26642728	26642752	chr3R	26643121	26643144	jockey	5	393	5.5	0.5	3.0	1.2	416	chr3R	26642728	intergenic	not near genes	chr3R	26642936	intergenic	not near genes	chr3R	26643144	intergenic	not near genes	chr3R_5_26640001	chr3R_26640001	RAL-804
1485	chr3R	26810551	26810583	chr3R	26811036	26811068	roo	13	484	2.5	2.5	2.5	3.7	517	chr3R	26810551	intron	Tl +	chr3R	26810810	intron	Tl +	chr3R	26811068	intron	Tl +	chr3R_13_26810001	chr3R_26810001	RAL-804
1489	chr3R	27140513	27140545	chr3R	27148123	27148153	412	13	7609	5.0	2.5	3.8	2.7	7640	chr3R	27140513	intron	CG6051 -	chr3R	27144333	intron	CG6051 -	chr3R	27148153	intron	CG6051 -	chr3R_13_27140001	chr3R_27140001	RAL-804
1492	chr3R	27342794	27342816	chr3R	27351375	27351397	Tirant	7	8581	3.5	2.0	2.8	1.8	8603	chr3R	27342794	intron	CG42534 +	chr3R	27347096	intron	CG42534 +	chr3R	27351397	intron	CG42534 +	chr3R_7_27345001	chr3R_27345001	RAL-804
1499	chr3R	27725563	27725596	chr3R	27731005	27731038	I-element	11	5442	2.0	3.0	2.5	3.1	5475	chr3R	27725563	intergenic	not near genes	chr3R	27728300	intergenic	not near genes	chr3R	27731038	intergenic	not near genes	chr3R_11_27725001	chr3R_27725001	RAL-804
1504	chr3R	27856758	27856789	chr3R	27858241	27858272	hopper2	10	1483	4.0	6.0	5.0	1.7	1514	chr3R	27856758	intron	CG34353 -	chr3R	27857515	intron	CG34353 -	chr3R	27858272	intron	CG34353 -	chr3R_10_27855001	chr3R_27855001	RAL-804
1505	chr3R	27862952	27862970	chr3R	27868257	27868275	Transpac	6	5305	7.0	1.0	4.0	1.2	5323	chr3R	27862952	intron	CG34353 -	chr3R	27865614	intron	CG34353 -	chr3R	27868275	intron	CG34353 -	chr3R_6_27865001	chr3R_27865001	RAL-804
1506	chr3R	27875704	27875728	chr3R	27882759	27882783	297	10	7055	2.5	4.0	3.2	2.4	7079	chr3R	27875704	intron	CG34353 -	chr3R	27879244	intron	CG34353 -	chr3R	27882783	intron	CG34353 -	chr3R_10_27875001	chr3R_27875001	RAL-804
1508	chr3R	28068498	28068521	chr3R	28073940	28073963	I-element	10	5440	3.0	4.0	3.5	2.2	5465	chr3R	28068498	intron	CG34362 +	chr3R	28071230	intron	CG34362 +	chr3R	28073963	intron	CG34362 +	chr3R_10_28070001	chr3R_28070001	RAL-804
1511	chr3R	28173680	28173704	chr3R	28181110	28181134	mdg1	8	7430	2.5	3.0	2.8	2.1	7454	chr3R	28173680	intron	CG34354 +	chr3R	28177407	intron	CG34354 +	chr3R	28181134	intron	CG34354 +	chr3R_8_28175001	chr3R_28175001	RAL-804
1513	chr3R	28253344	28253371	chr3R	28255854	28255881	jockey	10	2509	2.0	6.5	4.2	1.9	2537	chr3R	28253344	intergenic	not near genes	chr3R	28254612	intergenic	not near genes	chr3R	28255881	intergenic	not near genes	chr3R_10_28250001	chr3R_28250001	RAL-804
1526	chr3R	28792870	28792899	chr3R	28797965	28797979	jockey	8	5093	2.0	3.5	2.8	2.1	5109	chr3R	28792870	intergenic	not near genes	chr3R	28795424	intergenic	not near genes	chr3R	28797979	intergenic	not near genes	chr3R_8_28795001	chr3R_28795001	RAL-804
1534	chr3R	29319828	29319853	chr3R	29320147	29320172	jockey	4	319	1.0	6.5	3.8	0.8	344	chr3R	29319828	intergenic	Cnx99A -	chr3R	29320000	intergenic	Cnx99A -	chr3R	29320172	intergenic	not near genes	chr3R_4_29320001	chr3R_29320001	RAL-804
1537	chr3R	29406616	29406629	chr3R	29407902	29407903	jockey	6	1282	4.5	2.5	3.5	1.3	1287	chr3R	29406616	intron	Ptp99A +	chr3R	29407260	intron	Ptp99A +	chr3R	29407903	intron	Ptp99A +	chr3R_6_29405001	chr3R_29405001	RAL-804
1538	chr3R	29406630	29406652	chr3R	29407901	29407922	jockey	7	1280	2.0	2.0	2.0	2.3	1292	chr3R	29406630	intron	Ptp99A +	chr3R	29407276	intron	Ptp99A +	chr3R	29407922	intron	Ptp99A +	chr3R_7_29405001	chr3R_29405001	RAL-804
1549	chr3R	29738294	29738301	chr3R	29739762	29739768	hobo	4	1468	3.0	2.0	2.5	1.1	1474	chr3R	29738294	5` UTR	CG1969 +	chr3R	29739031	intron	CG1969 +	chr3R	29739768	5` UTR	CG1969 +	chr3R_4_29735001	chr3R_29735001	RAL-804
1550	chr3R	29882022	29882048	chr3R	29891179	29891205	roo	10	9157	6.5	0.5	3.5	2.2	9183	chr3R	29882022	intron	CG31038 +	chr3R	29886614	intron	CG31038 +	chr3R	29891205	intron	CG31038 +	chr3R_10_29885001	chr3R_29885001	RAL-804
1552	chr3R	30084849	30084873	chr3R	30086316	30086340	hobo	10	1467	5.0	3.5	4.2	1.9	1491	chr3R	30084849	intron	sima +	chr3R	30085594	intron	sima +	chr3R	30086340	intron	sima +	chr3R_10_30085001	chr3R_30085001	RAL-804
1562	chr3R	30396221	30396242	chr3R	30404486	30404508	roo	6	8266	2.5	3.5	3.0	1.5	8287	chr3R	30396221	intergenic	not near genes	chr3R	30400364	intergenic	not near genes	chr3R	30404508	5` UTR	CR45570 +	chr3R_6_30400001	chr3R_30400001	RAL-804
1564	chr3R	30480476	30480511	chr3R	30482943	30482979	jockey	13	2467	3.5	3.5	3.5	2.9	2503	chr3R	30480476	intron	PH4alphaEFB +	chr3R	30481728	intron	PH4alphaEFB +	chr3R	30482979	intron	PH4alphaEFB +	chr3R_13_30480001	chr3R_30480001	RAL-804
1570	chr3R	30679519	30679552	chr3R	30686988	30687021	blood	15	7469	1.5	6.0	3.8	3.1	7502	chr3R	30679519	intergenic	not near genes	chr3R	30683270	intergenic	not near genes	chr3R	30687021	intergenic	not near genes	chr3R_15_30680001	chr3R_30680001	RAL-804
1575	chr3R	31279372	31279404	chr3R	31285563	31285595	diver	7	6187	3.5	2.5	3.0	1.8	6223	chr3R	31279372	intergenic	not near genes	chr3R	31282484	intergenic	not near genes	chr3R	31285595	intergenic	not near genes	chr3R_7_31280001	chr3R_31280001	RAL-804
1576	chr3R	31413089	31413120	chr3R	31418289	31418320	copia	8	5199	3.5	3.5	3.5	1.8	5231	chr3R	31413089	intron	Gprk2 +	chr3R	31415704	intron	Gprk2 +	chr3R	31418320	intron	Gprk2 +	chr3R_8_31415001	chr3R_31415001	RAL-804
1581	chr3R	31691532	31691562	chr3R	31696298	31696328	Doc	16	4764	2.5	7.5	5.0	2.7	4796	chr3R	31691532	intergenic	not near genes	chr3R	31693930	intergenic	not near genes	chr3R	31696328	intergenic	not near genes	chr3R_16_31690001	chr3R_31690001	RAL-804
1589	chr3R	31997997	31998024	chr3R	32005467	32005494	blood	11	7470	1.5	2.5	2.0	3.7	7497	chr3R	31997997	intron	heph -	chr3R	32001746	intron	heph -	chr3R	32005494	intron	heph -	chr3R_11_32000001	chr3R_32000001	RAL-804
1590	chr4	76499	76514	chr4	81941	81953	I-element	4	5442	4.0	0.5	2.2	1.2	5454	chr4	76499	intron	pan +	chr4	79226	intron	pan +	chr4	81953	intron	pan +	chr4_4_75001	chr4_75001	RAL-804
1592	chr4	319993	320018	chr4	328169	328194	Stalker2	4	8176	0.5	1.0	0.8	2.2	8201	chr4	319993	3` UTR	CG32850 +	chr4	324094	intron	CG32850 +	chr4	328194	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_4_320001	chr4_320001	RAL-804
1594	chr4	671605	671635	chr4	680188	680218	Tirant	8	8581	5.0	3.0	4.0	1.6	8613	chr4	671605	intron	CG11360 +	chr4	675912	intron	CG11360 +	chr4	680218	intron	CG11360 +	chr4_8_675001	chr4_675001	RAL-804
1598	chrX	295856	295881	chrX	303476	303501	412	6	7620	2.5	1.5	2.0	2.0	7645	chrX	295856	intron	CG3777 +	chrX	299678	intron	CG3777 +	chrX	303501	intron	CG3777 +	chrX_6_295001	chrX_295001	RAL-804
1599	chrX	318475	318501	chrX	323561	323587	flea	4	5086	2.0	2.0	2.0	1.3	5112	chrX	318475	intron,intron	CG3777 +,CG32816 -	chrX	321031	intron,intron	CG3777 +,CG32816 -	chrX	323587	intron,intron	CG3777 +,CG32816 -	chrX_4_320001	chrX_320001	RAL-804
1600	chrX	428423	428446	chrX	434608	434631	3S18	8	6185	2.0	1.0	1.5	3.2	6208	chrX	428423	intron	CG32816 -	chrX	431527	intron	CG32816 -	chrX	434631	intron	CG32816 -	chrX_8_430001	chrX_430001	RAL-804
1603	chrX	551440	551447	chrX	559001	559009	412	4	7562	3.0	4.0	3.5	0.9	7569	chrX	551440	intron	Appl +	chrX	555224	intron	Appl +	chrX	559009	intron	Appl +	chrX_4_555001	chrX_555001	RAL-804
1612	chrX	827599	827619	chrX	835391	835411	roo	5	7792	3.0	0.0	1.5	2.0	7812	chrX	827599	intron	CG43867 -	chrX	831505	intron	CG43867 -	chrX	835411	intron	CG43867 -	chrX_5_830001	chrX_830001	RAL-804
1614	chrX	906702	906733	chrX	908491	908522	S-element	13	1788	2.5	4.5	3.5	2.9	1820	chrX	906702	intron	CG43867 -	chrX	907612	intron	CG43867 -	chrX	908522	intron	CG43867 -	chrX_13_905001	chrX_905001	RAL-804
1622	chrX	1518044	1518074	chrX	1523439	1523475	jockey	8	5400	2.5	4.5	3.5	1.8	5431	chrX	1518044	intergenic	inc +	chrX	1520760	intergenic	not near genes	chrX	1523475	intergenic	not near genes	chrX_8_1520001	chrX_1520001	RAL-804
1624	chrX	1627983	1628003	chrX	1635451	1635469	gtwin	7	7465	2.5	6.0	4.2	1.3	7486	chrX	1627983	intron,intron	Mur2B -,br +	chrX	1631726	intron,intron	Mur2B -,br +	chrX	1635469	intron,intron	Mur2B -,br +	chrX_7_1630001	chrX_1630001	RAL-804
1626	chrX	1930539	1930550	chrX	1938110	1938115	opus	4	7569	1.5	0.5	1.0	2.0	7576	chrX	1930539	intergenic	CG11596 +	chrX	1934327	intergenic	not near genes	chrX	1938115	3` UTR	CG3857 -	chrX_4_1930001	chrX_1930001	RAL-804
1630	chrX	2399843	2399869	chrX	2408188	2408196	roo	8	8346	4.0	1.5	2.8	2.1	8353	chrX	2399843	intergenic	not near genes	chrX	2404020	intergenic	not near genes	chrX	2408196	intergenic	not near genes	chrX_8_2400001	chrX_2400001	RAL-804
1632	chrX	2664382	2664414	chrX	2665528	2665560	1360	7	1146	0.5	0.5	0.5	4.7	1178	chrX	2664382	intron	sgg +	chrX	2664971	intron	sgg +	chrX	2665560	intron	sgg +	chrX_7_2660001	chrX_2660001	RAL-804
1634	chrX	2844913	2844930	chrX	2852323	2852340	mdg1	5	7410	1.0	2.0	1.5	2.0	7427	chrX	2844913	intron	kirre +	chrX	2848626	intron	kirre +	chrX	2852340	intron	kirre +	chrX_5_2845001	chrX_2845001	RAL-804
1638	chrX	3415021	3415048	chrX	3421206	3421233	3S18	6	6184	0.5	1.0	0.8	3.3	6212	chrX	3415021	intron,intron	CR44999 +,CG12535 -	chrX	3418127	intron,intron	CR44999 +,CG12535 -	chrX	3421233	intron,intron	CR44999 +,CG12535 -	chrX_6_3415001	chrX_3415001	RAL-804
1641	chrX	3597552	3597572	chrX	3619720	3619740	roo	8	22168	2.0	1.5	1.8	2.9	22188	chrX	3597552	intron	AstA-R1 +	chrX	3608646	intron	AstA-R1 +	chrX	3619740	intron	AstA-R1 +	chrX_8_3605001	chrX_3605001	RAL-804
1645	chrX	3726761	3726791	chrX	3730157	3730176	NOF	6	3393	0.5	2.5	1.5	2.4	3415	chrX	3726761	intron	tlk +	chrX	3728468	intron	tlk +	chrX	3730176	intron	tlk +	chrX_6_3725001	chrX_3725001	RAL-804
1649	chrX	3986867	3986893	chrX	3994500	3994525	412	8	7633	3.5	1.0	2.2	2.5	7658	chrX	3986867	intergenic	not near genes	chrX	3990696	intergenic	not near genes	chrX	3994525	intergenic	not near genes	chrX_8_3990001	chrX_3990001	RAL-804
1651	chrX	4157893	4157922	chrX	4164927	4164957	297	9	7035	2.5	5.0	3.8	1.9	7064	chrX	4157893	intron	Fas2 -	chrX	4161425	intron	Fas2 -	chrX	4164957	intron	Fas2 -	chrX_9_4160001	chrX_4160001	RAL-804
1654	chrX	4700392	4700417	chrX	4700735	4700760	jockey	9	343	1.0	1.5	1.2	4.1	368	chrX	4700392	3` UTR	ctp +	chrX	4700576	3` UTR	ctp +	chrX	4700760	3` UTR	ctp +	chrX_9_4700001	chrX_4700001	RAL-804
1655	chrX	4731818	4731826	chrX	4736911	4736919	jockey	6	5093	8.5	7.0	7.8	0.7	5101	chrX	4731818	intergenic	not near genes	chrX	4734368	intergenic	not near genes	chrX	4736919	intergenic	not near genes	chrX_6_4730001	chrX_4730001	RAL-804
1658	chrX	4763251	4763277	chrX	4763738	4763765	Stalker4	8	486	3.5	1.5	2.5	2.3	514	chrX	4763251	intergenic	not near genes	chrX	4763508	intergenic	not near genes	chrX	4763765	intergenic	not near genes	chrX_8_4760001	chrX_4760001	RAL-804
1659	chrX	4792381	4792408	chrX	4792811	4792841	jockey	7	426	2.5	4.5	3.5	1.6	460	chrX	4792381	intergenic	not near genes	chrX	4792611	intergenic	not near genes	chrX	4792841	intergenic	not near genes	chrX_7_4790001	chrX_4790001	RAL-804
1660	chrX	4827975	4827997	chrX	4835344	4835345	Stalker4	4	7359	3.0	3.5	3.2	1.0	7370	chrX	4827975	intergenic	not near genes	chrX	4831660	intergenic	not near genes	chrX	4835345	intergenic	not near genes	chrX_4_4830001	chrX_4830001	RAL-804
1665	chrX	4990051	4990069	chrX	4997265	4997282	roo	8	7213	2.0	1.5	1.8	2.9	7231	chrX	4990051	intron	CR44833 -	chrX	4993666	intron	CR44833 -	chrX	4997282	intron	CR44833 -	chrX_8_4990001	chrX_4990001	RAL-804
1666	chrX	5096275	5096304	chrX	5103840	5103859	springer	4	7559	1.0	2.0	1.5	1.6	7584	chrX	5096275	intron,intron	CG15465 +,rg +	chrX	5100067	intron,intron	CG15465 +,rg +	chrX	5103859	intron,intron	CG15465 +,rg +	chrX_4_5100001	chrX_5100001	RAL-804
1674	chrX	5883817	5883832	chrX	5884058	5884073	pogo	4	241	1.5	2.5	2.0	1.3	256	chrX	5883817	intron	CR45668 -	chrX	5883945	intron	CR45668 -	chrX	5884073	intron	CR45668 -	chrX_4_5880001	chrX_5880001	RAL-804
1679	chrX	6171591	6171608	chrX	6179024	6179041	Quasimodo	5	7432	1.5	3.0	2.2	1.6	7450	chrX	6171591	intron	Ca-alpha1T -	chrX	6175316	intron	Ca-alpha1T -	chrX	6179041	intron	Ca-alpha1T -	chrX_5_6175001	chrX_6175001	RAL-804
1681	chrX	6335224	6335244	chrX	6337734	6337754	Tirant	4	2510	0.0	4.0	2.0	1.3	2530	chrX	6335224	intergenic	not near genes	chrX	6336489	intergenic	not near genes	chrX	6337754	intergenic	CG3842 +	chrX_4_6335001	chrX_6335001	RAL-804
1682	chrX	6392879	6392899	chrX	6397643	6397664	Doc	6	4764	1.5	6.5	4.0	1.2	4785	chrX	6392879	intergenic	not near genes	chrX	6395272	intergenic	not near genes	chrX	6397664	intergenic	not near genes	chrX_6_6395001	chrX_6395001	RAL-804
1685	chrX	6562821	6562849	chrX	6571303	6571330	Tirant	11	8475	2.5	2.5	2.5	3.1	8509	chrX	6562821	intron	CG34417 +	chrX	6567076	intron	CG34417 +	chrX	6571330	intron	CG34417 +	chrX_11_6565001	chrX_6565001	RAL-804
1691	chrX	7023600	7023633	chrX	7030990	7031017	Tabor	7	7386	4.0	1.5	2.8	1.8	7417	chrX	7023600	intron	CG12541 -	chrX	7027308	intron	CG12541 -	chrX	7031017	intron	CG12541 -	chrX_7_7025001	chrX_7025001	RAL-804
1692	chrX	7125243	7125275	chrX	7134402	7134434	roo	8	9159	0.5	4.0	2.2	2.5	9191	chrX	7125243	intergenic	not near genes	chrX	7129838	intergenic	not near genes	chrX	7134434	intergenic	not near genes	chrX_8_7125001	chrX_7125001	RAL-804
1697	chrX	7702908	7702931	chrX	7703347	7703370	jockey	12	439	4.5	3.0	3.8	2.5	462	chrX	7702908	intron	CHES-1-like -	chrX	7703139	intron	CHES-1-like -	chrX	7703370	intron	CHES-1-like -	chrX_12_7700001	chrX_7700001	RAL-804
1700	chrX	7845725	7845755	chrX	7847215	7847246	hopper2	6	1491	5.0	3.0	4.0	1.2	1521	chrX	7845725	intergenic	not near genes	chrX	7846486	intergenic	not near genes	chrX	7847246	intergenic	not near genes	chrX_6_7845001	chrX_7845001	RAL-804
1709	chrX	8922342	8922363	chrX	8922760	8922766	jockey	9	426	1.0	2.0	1.5	3.6	424	chrX	8922342	intron	rdgA +	chrX	8922554	intron	rdgA +	chrX	8922766	intron	rdgA +	chrX_9_8920001	chrX_8920001	RAL-804
1710	chrX	8948771	8948784	chrX	8956281	8956294	roo	5	7510	0.0	3.5	1.8	1.8	7523	chrX	8948771	intron	rdgA +	chrX	8952532	intron	rdgA +	chrX	8956294	intron	rdgA +	chrX_5_8950001	chrX_8950001	RAL-804
1715	chrX	9508139	9508164	chrX	9509657	9509681	jockey	9	1518	2.0	4.5	3.2	2.1	1542	chrX	9508139	intron	CG32700 -	chrX	9508910	intron	CG32700 -	chrX	9509681	intron	CG32700 -	chrX_9_9505001	chrX_9505001	RAL-804
1716	chrX	9575795	9575820	chrX	9576119	9576143	mdg3	8	324	4.5	3.0	3.8	1.7	348	chrX	9575795	intron,exon	CG32699 -,CG42395 -	chrX	9575969	intron,intron	CG32699 -,CG42395 -	chrX	9576143	intron,5` UTR	CG32699 -,CG42395 -	chrX_8_9575001	chrX_9575001	RAL-804
1719	chrX	10138215	10138246	chrX	10145719	10145750	412	12	7504	1.0	2.0	1.5	4.8	7535	chrX	10138215	intron,intron	RhoU +,CR44894 -	chrX	10141982	intron,intron	RhoU +,CR44894 -	chrX	10145750	intron,intron	RhoU +,CR44894 -	chrX_12_10140001	chrX_10140001	RAL-804
1724	chrX	10550856	10550881	chrX	10552322	10552348	hobo	11	1467	1.5	3.5	2.5	3.1	1492	chrX	10550856	intron	spri -	chrX	10551602	intron	spri -	chrX	10552348	intron	spri -	chrX_11_10550001	chrX_10550001	RAL-804
1725	chrX	10686048	10686073	chrX	10691185	10691210	roo	5	5137	2.5	1.5	2.0	1.7	5162	chrX	10686048	intron	X11Lbeta +	chrX	10688629	intron	X11Lbeta +	chrX	10691210	intron	X11Lbeta +	chrX_5_10685001	chrX_10685001	RAL-804
1730	chrX	11312061	11312080	chrX	11319413	11319428	Stalker2	5	7351	5.0	4.0	4.5	0.9	7367	chrX	11312061	intergenic	not near genes	chrX	11315744	intergenic	not near genes	chrX	11319428	intergenic	not near genes	chrX_5_11315001	chrX_11315001	RAL-804
1732	chrX	11633417	11633442	chrX	11640471	11640496	297	5	7054	3.5	4.5	4.0	1.0	7079	chrX	11633417	intron	Ptp10D +	chrX	11636956	intron	Ptp10D +	chrX	11640496	intron	Ptp10D +	chrX_5_11635001	chrX_11635001	RAL-804
1734	chrX	12301956	12301976	chrX	12303262	12303276	X-element	7	1303	2.0	2.5	2.2	2.2	1320	chrX	12301956	intron	Ten-a +	chrX	12302616	intron	Ten-a +	chrX	12303276	intron	Ten-a +	chrX_7_12300001	chrX_12300001	RAL-804
1742	chrX	13429468	13429493	chrX	13430617	13430642	jockey	7	1148	2.5	3.0	2.8	1.8	1174	chrX	13429468	intergenic	not near genes	chrX	13430055	intergenic	not near genes	chrX	13430642	intergenic	not near genes	chrX_7_13430001	chrX_13430001	RAL-804
1745	chrX	13937993	13938006	chrX	13941264	13941277	I-element	4	3271	2.0	3.0	2.5	1.1	3284	chrX	13937993	intron	mamo -	chrX	13939635	intron	mamo -	chrX	13941277	intron	mamo -	chrX_4_13935001	chrX_13935001	RAL-804
1748	chrX	14105021	14105038	chrX	14114172	14114189	roo	4	9150	5.0	1.5	3.2	1.0	9168	chrX	14105021	intergenic	not near genes	chrX	14109605	intergenic	not near genes	chrX	14114189	5` UTR	CR44657 +	chrX_4_14105001	chrX_14105001	RAL-804
1754	chrX	14636455	14636495	chrX	14641896	14641929	I-element	13	5438	1.0	1.5	1.2	5.9	5474	chrX	14636455	intron	NetA -	chrX	14639192	intron	NetA -	chrX	14641929	intron	NetA -	chrX_13_14635001	chrX_14635001	RAL-804
1758	chrX	14818774	14818797	chrX	14823978	14823985	copia	5	5201	2.5	4.0	3.2	1.2	5211	chrX	14818774	intron	rut -	chrX	14821380	intron	rut -	chrX	14823985	intron	rut -	chrX_5_14820001	chrX_14820001	RAL-804
1762	chrX	15273723	15273733	chrX	15274871	15274885	1360	5	1153	4.5	2.0	3.2	1.2	1162	chrX	15273723	intergenic	not near genes	chrX	15274304	intergenic	not near genes	chrX	15274885	intergenic	not near genes	chrX_5_15270001	chrX_15270001	RAL-804
1764	chrX	15413050	15413078	chrX	15417351	15417380	Juan	8	4301	4.5	1.5	3.0	2.0	4330	chrX	15413050	intron	Cngl -	chrX	15415215	intron	Cngl -	chrX	15417380	intron	Cngl -	chrX_8_15415001	chrX_15415001	RAL-804
1765	chrX	15435687	15435697	chrX	15436120	15436130	rover	5	433	0.0	6.0	3.0	1.2	443	chrX	15435687	intron	Cngl -	chrX	15435908	intron	Cngl -	chrX	15436130	intron	Cngl -	chrX_5_15435001	chrX_15435001	RAL-804
1771	chrX	16492644	16492677	chrX	16498221	16498254	mdg3	7	5577	4.0	1.5	2.8	1.8	5610	chrX	16492644	intron	para -	chrX	16495449	intron	para -	chrX	16498254	intron	para -	chrX_7_16495001	chrX_16495001	RAL-804
1785	chrX	17792961	17792982	chrX	17796257	17796278	flea	6	3296	1.0	2.5	1.8	2.1	3317	chrX	17792961	intron	OdsH +	chrX	17794620	intron	OdsH +	chrX	17796278	intron	OdsH +	chrX_6_17790001	chrX_17790001	RAL-804
1787	chrX	18194065	18194100	chrX	18194600	18194635	BS	8	535	2.0	1.0	1.5	3.2	570	chrX	18194065	intron	Frq2 +	chrX	18194350	intron	Frq2 +	chrX	18194635	intron	Frq2 +	chrX_8_18190001	chrX_18190001	RAL-804
1789	chrX	18429497	18429523	chrX	18434807	18434833	Transpac	9	5310	0.5	3.5	2.0	3.0	5336	chrX	18429497	intergenic	not near genes	chrX	18432165	intergenic	not near genes	chrX	18434833	intergenic	not near genes	chrX_9_18430001	chrX_18430001	RAL-804
1796	chrX	19060410	19060437	chrX	19065194	19065220	Doc	7	4784	3.0	3.5	3.2	1.7	4810	chrX	19060410	intron	CG14190 +	chrX	19062815	intron	CG14190 +	chrX	19065220	intron	CG14190 +	chrX_7_19060001	chrX_19060001	RAL-804
1801	chrX	19356987	19357012	chrX	19358428	19358453	NOF	6	1441	2.0	1.0	1.5	2.4	1466	chrX	19356987	intron	kek5 +	chrX	19357720	intron	kek5 +	chrX	19358453	intron	kek5 +	chrX_6_19355001	chrX_19355001	RAL-804
1802	chrX	19380163	19380177	chrX	19380404	19380413	pogo	4	240	5.5	2.5	4.0	0.8	250	chrX	19380163	intron	kek5 +	chrX	19380288	intron	kek5 +	chrX	19380413	intron	kek5 +	chrX_4_19380001	chrX_19380001	RAL-804
1803	chrX	19472129	19472154	chrX	19472699	19472722	jockey	6	568	2.5	4.5	3.5	1.3	593	chrX	19472129	intergenic	kek5 +	chrX	19472426	intergenic	not near genes	chrX	19472722	intergenic	not near genes	chrX_6_19470001	chrX_19470001	RAL-804
1807	chrX	19710072	19710103	chrX	19711858	19711889	S-element	10	1786	5.0	3.0	4.0	2.0	1817	chrX	19710072	intron	meso18E -	chrX	19710980	intron	meso18E -	chrX	19711889	intron	meso18E -	chrX_10_19710001	chrX_19710001	RAL-804
1818	chrX	20377325	20377348	chrX	20378792	20378815	hobo	10	1466	2.5	2.5	2.5	2.9	1490	chrX	20377325	intergenic	not near genes	chrX	20378070	intergenic	not near genes	chrX	20378815	intergenic	not near genes	chrX_10_20375001	chrX_20375001	RAL-804
1824	chrX	20940722	20940750	chrX	20942191	20942219	hobo	15	1469	3.0	3.0	3.0	3.8	1497	chrX	20940722	intergenic	not near genes	chrX	20941470	intergenic	not near genes	chrX	20942219	intergenic	not near genes	chrX_15_20940001	chrX_20940001	RAL-804
1826	chrX	21086132	21086163	chrX	21087161	21087184	jockey	10	1026	3.5	2.5	3.0	2.5	1052	chrX	21086132	intergenic	not near genes	chrX	21086658	intergenic	not near genes	chrX	21087184	intergenic	not near genes	chrX_10_21085001	chrX_21085001	RAL-804
1832	chrX	21474403	21474426	chrX	21474769	21474792	1731	8	366	4.0	4.0	4.0	1.6	389	chrX	21474403	intergenic	not near genes	chrX	21474598	intergenic	not near genes	chrX	21474792	intergenic	not near genes	chrX_8_21470001	chrX_21470001	RAL-804
1840	chrX	22697500	22697523	chrX	22701797	22701820	Juan	5	4297	1.0	3.0	2.0	1.7	4320	chrX	22697500	intron	CR44997 +	chrX	22699660	intron	CR44997 +	chrX	22701820	intron	CR44997 +	chrX_5_22695001	chrX_22695001	RAL-804