SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
1	chr2L	47458	47480	chr2L	52563	52584	jockey	10	5104	4.0	3.5	3.8	2.1	5126	chr2L	47458	intron	Cda5 -	chr2L	50021	intron	Cda5 -	chr2L	52584	intron	Cda5 -	chr2L_10_50001	chr2L_50001	RAL-799
8	chr2L	347885	347909	chr2L	355385	355409	blood	6	7500	3.0	2.0	2.5	1.7	7524	chr2L	347885	3` UTR	Plc21C +	chr2L	351647	intron	Plc21C +	chr2L	355409	3` UTR	Plc21C +	chr2L_6_350001	chr2L_350001	RAL-799
12	chr2L	686916	686936	chr2L	695956	695976	roo	6	9040	4.0	3.5	3.8	1.2	9060	chr2L	686916	intron	ds -	chr2L	691446	intron	ds -	chr2L	695976	intron	ds -	chr2L_6_690001	chr2L_690001	RAL-799
15	chr2L	770463	770492	chr2L	772244	772271	Bari1	8	1780	2.0	4.5	3.2	1.9	1808	chr2L	770463	intergenic	not near genes	chr2L	771367	intergenic	not near genes	chr2L	772271	intergenic	CR44614 +	chr2L_8_770001	chr2L_770001	RAL-799
20	chr2L	976881	976900	chr2L	984517	984536	roo	5	7636	1.5	0.5	1.0	2.5	7655	chr2L	976881	intergenic	not near genes	chr2L	980708	intergenic	not near genes	chr2L	984536	intergenic	not near genes	chr2L_5_980001	chr2L_980001	RAL-799
24	chr2L	1220131	1220160	chr2L	1227597	1227626	blood	8	7466	2.5	3.5	3.0	2.0	7495	chr2L	1220131	intron	CG42329 +	chr2L	1223878	intron	CG42329 +	chr2L	1227626	intron	CG42329 +	chr2L_8_1220001	chr2L_1220001	RAL-799
28	chr2L	1570692	1570716	chr2L	1573564	1573588	F-element	8	2872	2.5	3.5	3.0	2.0	2896	chr2L	1570692	intron	haf +	chr2L	1572140	intron	haf +	chr2L	1573588	intron	haf +	chr2L_8_1570001	chr2L_1570001	RAL-799
30	chr2L	1678958	1679004	chr2L	1686441	1686468	blood	5	7467	0.0	3.0	1.5	2.0	7510	chr2L	1678958	intron	chinmo +	chr2L	1682713	intron	chinmo +	chr2L	1686468	intron	chinmo +	chr2L_5_1680001	chr2L_1680001	RAL-799
31	chr2L	1711358	1711387	chr2L	1711682	1711711	mdg3	4	324	3.0	2.5	2.8	1.1	353	chr2L	1711358	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711534	3` UTR	frtz -	chr2L	1711711	3` UTR	frtz -	chr2L_4_1710001	chr2L_1710001	RAL-799
37	chr2L	2100380	2100398	chr2L	2109530	2109548	roo	7	9150	5.0	3.0	4.0	1.4	9168	chr2L	2100380	intron	dpr3 -	chr2L	2104964	intron	dpr3 -	chr2L	2109548	intron	dpr3 -	chr2L_7_2100001	chr2L_2100001	RAL-799
38	chr2L	2112117	2112141	chr2L	2119779	2119801	opus	7	7661	0.0	1.5	0.8	3.9	7684	chr2L	2112117	intergenic	not near genes	chr2L	2115959	intergenic	not near genes	chr2L	2119801	intergenic	not near genes	chr2L_7_2115001	chr2L_2115001	RAL-799
43	chr2L	2294044	2294069	chr2L	2299249	2299274	copia	7	5203	1.0	1.5	1.2	3.2	5230	chr2L	2294044	intergenic	not near genes	chr2L	2296659	intergenic	not near genes	chr2L	2299274	intergenic	not near genes	chr2L_7_2295001	chr2L_2295001	RAL-799
47	chr2L	2661205	2661234	chr2L	2663043	2663072	I-element	5	1832	0.5	1.5	1.0	2.5	1867	chr2L	2661205	intergenic	not near genes	chr2L	2662138	intergenic	not near genes	chr2L	2663072	intergenic	not near genes	chr2L_5_2660001	chr2L_2660001	RAL-799
50	chr2L	2933305	2933318	chr2L	2935484	2935497	pogo	5	2177	1.5	1.0	1.2	2.3	2192	chr2L	2933305	intron	lilli +	chr2L	2934401	intron	lilli +	chr2L	2935497	intron	lilli +	chr2L_5_2930001	chr2L_2930001	RAL-799
51	chr2L	3073031	3073063	chr2L	3078234	3078265	copia	7	5203	1.5	3.5	2.5	2.0	5234	chr2L	3073031	intron	toc -	chr2L	3075648	intron	toc -	chr2L	3078265	intron	toc -	chr2L_7_3075001	chr2L_3075001	RAL-799
54	chr2L	3202738	3202771	chr2L	3210167	3210193	mdg1	5	7427	1.5	2.5	2.0	1.7	7455	chr2L	3202738	intergenic	not near genes	chr2L	3206466	intergenic	not near genes	chr2L	3210193	intergenic	CR45336 +	chr2L_5_3205001	chr2L_3205001	RAL-799
55	chr2L	3251497	3251526	chr2L	3259062	3259091	springer	8	7565	1.5	2.0	1.8	2.9	7594	chr2L	3251497	intergenic	not near genes	chr2L	3255294	intergenic	not near genes	chr2L	3259091	intergenic	not near genes	chr2L_8_3255001	chr2L_3255001	RAL-799
63	chr2L	3649791	3649804	chr2L	3654992	3655006	copia	4	5202	1.0	3.0	2.0	1.3	5215	chr2L	3649791	intron	for -	chr2L	3652398	intron	for -	chr2L	3655006	intron	for -	chr2L_4_3650001	chr2L_3650001	RAL-799
74	chr2L	4601709	4601732	chr2L	4609149	4609173	mdg1	7	7441	2.5	4.0	3.2	1.7	7464	chr2L	4601709	intron	dp -	chr2L	4605441	intron	dp -	chr2L	4609173	intron	dp -	chr2L_7_4605001	chr2L_4605001	RAL-799
83	chr2L	4918167	4918188	chr2L	4923240	4923243	jockey	5	5069	2.5	2.0	2.2	1.6	5076	chr2L	4918167	intron	hoe1 -	chr2L	4920705	intron	hoe1 -	chr2L	4923243	intron	hoe1 -	chr2L_5_4920001	chr2L_4920001	RAL-799
84	chr2L	4953520	4953536	chr2L	4953761	4953777	pogo	4	241	1.5	2.0	1.8	1.4	257	chr2L	4953520	intergenic	Jon25Bii -	chr2L	4953648	intergenic	not near genes	chr2L	4953777	intergenic	not near genes	chr2L_4_4950001	chr2L_4950001	RAL-799
95	chr2L	5827707	5827737	chr2L	5836715	5836745	roo	11	9008	2.5	3.0	2.8	2.9	9038	chr2L	5827707	intron	TrissinR +	chr2L	5832226	intron	TrissinR +	chr2L	5836745	intron	TrissinR +	chr2L_11_5830001	chr2L_5830001	RAL-799
100	chr2L	6426854	6426888	chr2L	6445114	6445148	roo	12	18260	3.0	4.5	3.8	2.5	18294	chr2L	6426854	3` UTR	CG9527 -	chr2L	6436001	intron	CG9527 -	chr2L	6445148	exon	CG9527 -	chr2L_12_6435001	chr2L_6435001	RAL-799
114	chr2L	7343332	7343358	chr2L	7350439	7350474	roo	11	7115	3.0	3.5	3.2	2.6	7142	chr2L	7343332	intron	Wnt6 +	chr2L	7346903	intron	Wnt6 +	chr2L	7350474	intron	Wnt6 +	chr2L_11_7345001	chr2L_7345001	RAL-799
119	chr2L	7959041	7959070	chr2L	7960452	7960481	pogo	12	1411	2.0	2.5	2.2	3.8	1440	chr2L	7959041	intron	Snoo -	chr2L	7959761	intron	Snoo -	chr2L	7960481	intron	Snoo -	chr2L_12_7955001	chr2L_7955001	RAL-799
120	chr2L	8018821	8018830	chr2L	8023605	8023614	Doc	4	4784	1.0	3.5	2.2	1.2	4793	chr2L	8018821	intron	Tg +	chr2L	8021218	intron	Tg +	chr2L	8023614	intron	Tg +	chr2L_4_8020001	chr2L_8020001	RAL-799
128	chr2L	8452420	8452453	chr2L	8461591	8461623	roo	7	9170	2.5	1.0	1.8	2.5	9203	chr2L	8452420	intron	fu12 -	chr2L	8457022	intron	fu12 -	chr2L	8461623	intron	fu12 -	chr2L_7_8455001	chr2L_8455001	RAL-799
132	chr2L	8723114	8723139	chr2L	8731490	8731515	Tirant	8	8377	2.0	2.0	2.0	2.7	8401	chr2L	8723114	intron	raw -	chr2L	8727314	intron	raw -	chr2L	8731515	intron	raw -	chr2L_8_8725001	chr2L_8725001	RAL-799
139	chr2L	9000278	9000307	chr2L	9007788	9007817	roo	8	7510	3.5	3.0	3.2	1.9	7539	chr2L	9000278	intergenic	Try29F +	chr2L	9004048	intergenic	not near genes	chr2L	9007817	intergenic	not near genes	chr2L_8_9000001	chr2L_9000001	RAL-799
144	chr2L	9393501	9393530	chr2L	9396468	9396497	jockey	4	2967	1.5	2.0	1.8	1.4	2996	chr2L	9393501	intron	Shawl -	chr2L	9394999	intron	Shawl -	chr2L	9396497	intron	Shawl -	chr2L_4_9390001	chr2L_9390001	RAL-799
151	chr2L	9973730	9973751	chr2L	9980848	9980869	HMS-Beagle	9	7118	4.5	7.0	5.8	1.3	7139	chr2L	9973730	intergenic	not near genes	chr2L	9977300	intergenic	not near genes	chr2L	9980869	intergenic	not near genes	chr2L_9_9975001	chr2L_9975001	RAL-799
155	chr2L	10156321	10156346	chr2L	10163791	10163816	blood	7	7470	2.5	2.5	2.5	2.0	7495	chr2L	10156321	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160068	intron	CG44153 -	chr2L	10163816	intron	CG44153 -	chr2L_7_10160001	chr2L_10160001	RAL-799
163	chr2L	10862842	10862875	chr2L	10864456	10864489	Rt1c	10	1609	3.5	4.5	4.0	2.0	1647	chr2L	10862842	3` UTR	CR43807 -	chr2L	10863666	intron	CR43807 -	chr2L	10864489	3` UTR	CR43807 -	chr2L_10_10860001	chr2L_10860001	RAL-799
166	chr2L	10946949	10946976	chr2L	10956163	10956191	roo	11	9215	6.0	5.0	5.5	1.7	9242	chr2L	10946949	intron	dpr2 -	chr2L	10951570	intron	dpr2 -	chr2L	10956191	intron	dpr2 -	chr2L_11_10950001	chr2L_10950001	RAL-799
169	chr2L	11540587	11540610	chr2L	11547989	11548012	Tabor	5	7402	0.0	4.0	2.0	1.7	7425	chr2L	11540587	intergenic	not near genes	chr2L	11544300	intergenic	not near genes	chr2L	11548012	intergenic	not near genes	chr2L_5_11540001	chr2L_11540001	RAL-799
170	chr2L	11563639	11563667	chr2L	11568843	11568871	copia	5	5203	2.5	2.0	2.2	1.6	5232	chr2L	11563639	intergenic	not near genes	chr2L	11566255	intergenic	not near genes	chr2L	11568871	intergenic	not near genes	chr2L_5_11565001	chr2L_11565001	RAL-799
171	chr2L	11614068	11614084	chr2L	11615559	11615570	hopper2	5	1492	3.0	1.0	2.0	1.7	1502	chr2L	11614068	intron	kek2 +	chr2L	11614819	intron	kek2 +	chr2L	11615570	intron	kek2 +	chr2L_5_11610001	chr2L_11610001	RAL-799
173	chr2L	11713512	11713539	chr2L	11720979	11721006	blood	6	7466	1.0	2.0	1.5	2.4	7494	chr2L	11713512	intergenic	not near genes	chr2L	11717259	intergenic	not near genes	chr2L	11721006	intergenic	CR44143 +	chr2L_6_11715001	chr2L_11715001	RAL-799
185	chr2L	12558326	12558353	chr2L	12565455	12565482	HMS-Beagle	12	7127	0.5	4.0	2.2	3.8	7156	chr2L	12558326	intergenic	not near genes	chr2L	12561904	intergenic	not near genes	chr2L	12565482	intergenic	not near genes	chr2L_12_12560001	chr2L_12560001	RAL-799
186	chr2L	12728928	12728949	chr2L	12729170	12729191	pogo	4	242	2.5	3.0	2.8	1.1	263	chr2L	12728928	intron	MRP +	chr2L	12729060	intron	MRP +	chr2L	12729191	exon	MRP +	chr2L_4_12725001	chr2L_12725001	RAL-799
187	chr2L	12731055	12731091	chr2L	12735822	12735858	F-element	7	4767	1.0	1.5	1.2	3.2	4803	chr2L	12731055	intron	MRP +	chr2L	12733456	intron	MRP +	chr2L	12735858	intron	MRP +	chr2L_7_12730001	chr2L_12730001	RAL-799
188	chr2L	12739177	12739204	chr2L	12743958	12743985	Doc	10	4780	2.5	4.0	3.2	2.4	4808	chr2L	12739177	exon	MRP +	chr2L	12741581	intron	MRP +	chr2L	12743985	exon	MRP +	chr2L_10_12740001	chr2L_12740001	RAL-799
191	chr2L	12791609	12791625	chr2L	12795284	12795299	F-element	5	3675	2.0	3.0	2.5	1.4	3690	chr2L	12791609	intergenic	not near genes	chr2L	12793454	intergenic	not near genes	chr2L	12795299	intergenic	not near genes	chr2L_5_12790001	chr2L_12790001	RAL-799
193	chr2L	12861696	12861728	chr2L	12863163	12863195	hobo	7	1467	6.0	3.5	4.8	1.2	1499	chr2L	12861696	intergenic	not near genes	chr2L	12862446	intergenic	not near genes	chr2L	12863195	intergenic	not near genes	chr2L_7_12860001	chr2L_12860001	RAL-799
195	chr2L	12933850	12933883	chr2L	12941317	12941350	blood	12	7466	4.5	5.0	4.8	2.1	7500	chr2L	12933850	intergenic	not near genes	chr2L	12937600	intergenic	not near genes	chr2L	12941350	intergenic	not near genes	chr2L_12_12935001	chr2L_12935001	RAL-799
199	chr2L	13405646	13405682	chr2L	13410443	13410479	Doc	12	4797	1.5	4.5	3.0	3.0	4833	chr2L	13405646	exon	CG7110 +	chr2L	13408062	intron	CG7110 +	chr2L	13410479	intron	CG7110 +	chr2L_12_13405001	chr2L_13405001	RAL-799
201	chr2L	13481452	13481474	chr2L	13482055	13482081	jockey	6	606	2.5	3.5	3.0	1.5	629	chr2L	13481452	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482081	intron	CG42784 +	chr2L_6_13480001	chr2L_13480001	RAL-799
202	chr2L	13761803	13761835	chr2L	13762914	13762945	Doc	5	1111	1.5	2.5	2.0	1.7	1142	chr2L	13761803	intron	TM9SF4 +	chr2L	13762374	intron	TM9SF4 +	chr2L	13762945	intron	TM9SF4 +	chr2L_5_13760001	chr2L_13760001	RAL-799
204	chr2L	13853083	13853103	chr2L	13862233	13862253	roo	6	9150	5.5	1.5	3.5	1.3	9170	chr2L	13853083	intron	CenG1A +	chr2L	13857668	intron	CenG1A +	chr2L	13862253	intron	CenG1A +	chr2L_6_13855001	chr2L_13855001	RAL-799
216	chr2L	14642569	14642602	chr2L	14651732	14651765	roo	4	9163	0.5	0.5	0.5	2.7	9196	chr2L	14642569	intron	osp -	chr2L	14647167	intron	osp -	chr2L	14651765	intron	osp -	chr2L_4_14645001	chr2L_14645001	RAL-799
222	chr2L	15446058	15446073	chr2L	15453527	15453541	blood	6	7469	1.0	2.5	1.8	2.1	7483	chr2L	15446058	intergenic	not near genes	chr2L	15449800	intergenic	not near genes	chr2L	15453541	intergenic	not near genes	chr2L_6_15445001	chr2L_15445001	RAL-799
231	chr2L	15956022	15956056	chr2L	15957524	15957558	hobo	9	1501	0.5	0.0	0.2	7.5	1536	chr2L	15956022	intron	beat-Ib -	chr2L	15956790	intron	beat-Ib -	chr2L	15957558	intron	beat-Ib -	chr2L_9_15955001	chr2L_15955001	RAL-799
234	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	11	145889	14.5	12.5	13.5	0.8	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_11_16140001	chr2L_16140001	RAL-799
236	chr2L	16141166	16141186	chr2L	16146373	16146393	copia	5	5207	2.5	1.0	1.8	1.8	5227	chr2L	16141166	intergenic	not near genes	chr2L	16143780	intergenic	not near genes	chr2L	16146393	intergenic	not near genes	chr2L_5_16140001	chr2L_16140001	RAL-799
240	chr2L	16280263	16280284	chr2L	16281434	16281455	1360	9	1171	4.5	5.5	5.0	1.5	1192	chr2L	16280263	intron	crp -	chr2L	16280859	intron	crp -	chr2L	16281455	intron	crp -	chr2L_9_16280001	chr2L_16280001	RAL-799
245	chr2L	16958103	16958120	chr2L	16962891	16962907	Doc	5	4788	1.0	3.5	2.2	1.6	4804	chr2L	16958103	intergenic	not near genes	chr2L	16960505	intergenic	not near genes	chr2L	16962907	intergenic	not near genes	chr2L_5_16960001	chr2L_16960001	RAL-799
251	chr2L	17167571	17167594	chr2L	17167812	17167835	pogo	4	241	0.5	0.5	0.5	2.7	264	chr2L	17167571	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167703	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167835	intron,intron	CG34106 +,beat-IIIa +	chr2L_4_17165001	chr2L_17165001	RAL-799
252	chr2L	17273195	17273225	chr2L	17277978	17278008	F-element	7	4782	1.5	3.0	2.2	2.2	4813	chr2L	17273195	intergenic	not near genes	chr2L	17275602	intergenic	not near genes	chr2L	17278008	intergenic	not near genes	chr2L_7_17275001	chr2L_17275001	RAL-799
254	chr2L	17432013	17432046	chr2L	17432120	17432153	1360	8	107	0.0	0.0	0.0	8.0	140	chr2L	17432013	intron	Dif -	chr2L	17432083	intron	Dif -	chr2L	17432153	intron	Dif -	chr2L_8_17430001	chr2L_17430001	RAL-799
255	chr2L	17819923	17819955	chr2L	17825126	17825158	copia	8	5203	3.5	2.5	3.0	2.0	5235	chr2L	17819923	intron	CadN2 -	chr2L	17822540	intron	CadN2 -	chr2L	17825158	intron	CadN2 -	chr2L_8_17820001	chr2L_17820001	RAL-799
258	chr2L	17911968	17911980	chr2L	17914142	17914158	pogo	4	2177	4.5	3.0	3.8	0.8	2190	chr2L	17911968	intergenic	not near genes	chr2L	17913063	intergenic	not near genes	chr2L	17914158	intergenic	CG43271 -	chr2L_4_17910001	chr2L_17910001	RAL-799
259	chr2L	17951948	17951979	chr2L	17953414	17953446	hobo	9	1467	2.0	3.0	2.5	2.6	1498	chr2L	17951948	intergenic	CR44398 -,CR44397 -	chr2L	17952697	intergenic	not near genes	chr2L	17953446	intergenic	not near genes	chr2L_9_17950001	chr2L_17950001	RAL-799
260	chr2L	18051887	18051902	chr2L	18061034	18061049	roo	4	9146	3.5	3.5	3.5	0.9	9162	chr2L	18051887	intron	rdo +	chr2L	18056468	intron	rdo +	chr2L	18061049	intron	rdo +	chr2L_4_18055001	chr2L_18055001	RAL-799
266	chr2L	18408028	18408055	chr2L	18412811	18412839	Doc	8	4784	0.5	1.5	1.0	4.0	4811	chr2L	18408028	intergenic	not near genes	chr2L	18410434	intergenic	not near genes	chr2L	18412839	intergenic	not near genes	chr2L_8_18410001	chr2L_18410001	RAL-799
277	chr2L	19147379	19147402	chr2L	19154414	19154437	297	8	7035	1.0	1.5	1.2	3.6	7058	chr2L	19147379	intron	brat +	chr2L	19150908	intron	brat +	chr2L	19154437	intron	brat +	chr2L_8_19150001	chr2L_19150001	RAL-799
287	chr2L	19620099	19620122	chr2L	19621088	19621111	jockey	7	988	7.0	0.5	3.8	1.5	1012	chr2L	19620099	intron	Lar +	chr2L	19620605	intron	Lar +	chr2L	19621111	intron	Lar +	chr2L_7_19620001	chr2L_19620001	RAL-799
288	chr2L	19652584	19652595	chr2L	19674020	19674031	opus	5	21436	3.0	2.0	2.5	1.4	21447	chr2L	19652584	intron	Lar +	chr2L	19663308	intron	Lar +	chr2L	19674031	intron	Lar +	chr2L_5_19660001	chr2L_19660001	RAL-799
289	chr2L	19703538	19703567	chr2L	19712674	19712703	roo	6	9136	3.5	1.0	2.2	1.9	9165	chr2L	19703538	intron	Lar +	chr2L	19708120	intron	Lar +	chr2L	19712703	intron	Lar +	chr2L_6_19705001	chr2L_19705001	RAL-799
290	chr2L	19737356	19737383	chr2L	19740824	19740852	1360	14	3468	2.5	3.5	3.0	3.5	3496	chr2L	19737356	intergenic	Nf-YB +	chr2L	19739104	intergenic	not near genes	chr2L	19740852	intergenic	not near genes	chr2L_14_19735001	chr2L_19735001	RAL-799
291	chr2L	19762818	19762839	chr2L	19763060	19763081	pogo	4	242	2.5	3.0	2.8	1.1	263	chr2L	19762818	intron	fbp -	chr2L	19762950	intron	fbp -	chr2L	19763081	intron	fbp -	chr2L_4_19760001	chr2L_19760001	RAL-799
293	chr2L	20005876	20005903	chr2L	20010952	20010978	flea	7	5076	0.5	3.5	2.0	2.3	5102	chr2L	20005876	intron	CG43861 -	chr2L	20008427	intron	CG43861 -	chr2L	20010978	intron	CG43861 -	chr2L_7_20005001	chr2L_20005001	RAL-799
297	chr2L	20272112	20272143	chr2L	20282823	20282854	copia	7	10710	2.5	5.5	4.0	1.4	10742	chr2L	20272112	intergenic	not near genes	chr2L	20277483	intergenic	not near genes	chr2L	20282854	intergenic	not near genes	chr2L_7_20275001	chr2L_20275001	RAL-799
299	chr2L	20303164	20303176	chr2L	20310632	20310644	blood	4	7468	0.5	2.0	1.2	1.8	7480	chr2L	20303164	intergenic	not near genes	chr2L	20306904	intergenic	not near genes	chr2L	20310644	intergenic	not near genes	chr2L_4_20305001	chr2L_20305001	RAL-799
302	chr2L	20568661	20568683	chr2L	20569051	20569071	X-element	6	390	1.0	2.0	1.5	2.4	410	chr2L	20568661	intron	CR45347 +	chr2L	20568866	intron	CR45347 +	chr2L	20569071	intron	CR45347 +	chr2L_6_20565001	chr2L_20565001	RAL-799
303	chr2L	20576218	20576247	chr2L	20583686	20583715	blood	9	7468	5.0	3.0	4.0	1.8	7497	chr2L	20576218	intergenic	CR45347 +	chr2L	20579966	intergenic	not near genes	chr2L	20583715	3` UTR	CR44909 -	chr2L_9_20575001	chr2L_20575001	RAL-799
308	chr2L	20835809	20835834	chr2L	20836526	20836551	Quasimodo	6	716	0.5	1.5	1.0	3.0	742	chr2L	20835809	5` UTR	Oseg5 -	chr2L	20836180	intergenic	Oseg5 -,Spn38F -	chr2L	20836551	intergenic	Spn38F -	chr2L_6_20835001	chr2L_20835001	RAL-799
309	chr2L	20976650	20976670	chr2L	20981465	20981484	X-element	6	4815	1.5	3.0	2.2	1.9	4834	chr2L	20976650	intron	CG42238 -	chr2L	20979067	intron	CG42238 -	chr2L	20981484	intron	CG42238 -	chr2L_6_20975001	chr2L_20975001	RAL-799
311	chr2L	21020282	21020307	chr2L	21023959	21023983	NOF	4	3677	1.0	3.5	2.2	1.2	3701	chr2L	21020282	intron	CG42238 -	chr2L	21022132	intron	CG42238 -	chr2L	21023983	intron	CG42238 -	chr2L_4_21020001	chr2L_21020001	RAL-799
312	chr2L	21041134	21041167	chr2L	21049395	21049428	Tirant	8	8261	2.0	2.0	2.0	2.7	8294	chr2L	21041134	intron	CG42238 -	chr2L	21045281	intron	CG42238 -	chr2L	21049428	intron	CG42238 -	chr2L_8_21045001	chr2L_21045001	RAL-799
317	chr2L	21347550	21347583	chr2L	21355021	21355054	blood	7	7471	2.5	1.5	2.0	2.3	7504	chr2L	21347550	intron	Tsp39D +	chr2L	21351302	intron	Tsp39D +	chr2L	21355054	intron	Tsp39D +	chr2L_7_21350001	chr2L_21350001	RAL-799
319	chr2L	21597029	21597053	chr2L	21604772	21604797	roo	5	7744	5.0	2.5	3.8	1.0	7768	chr2L	21597029	intergenic	not near genes	chr2L	21600913	intergenic	not near genes	chr2L	21604797	intergenic	not near genes	chr2L_5_21600001	chr2L_21600001	RAL-799
323	chr2L	21981683	21981716	chr2L	21990847	21990880	roo	7	9164	1.0	2.5	1.8	2.5	9197	chr2L	21981683	exon	CG2528 -	chr2L	21986282	intron	CG2528 -	chr2L	21990880	exon	CG2528 -	chr2L_7_21985001	chr2L_21985001	RAL-799
328	chr2L	22548925	22548939	chr2L	22550150	22550164	1360	8	1225	0.0	4.5	2.2	2.5	1239	chr2L	22548925	intergenic	CG17490 +	chr2L	22549544	intergenic	not near genes	chr2L	22550164	intergenic	CG17493 +	chr2L_8_22545001	chr2L_22545001	RAL-799
329	chr2L	22679800	22679827	chr2L	22684572	22684599	F-element	7	4771	1.5	3.5	2.5	2.0	4799	chr2L	22679800	intron	CG40006 -	chr2L	22682200	intron	CG40006 -	chr2L	22684599	intron	CG40006 -	chr2L_7_22680001	chr2L_22680001	RAL-799
331	chr2L	22776421	22776451	chr2L	22778210	22778240	S-element	5	1789	0.0	1.5	0.8	2.8	1819	chr2L	22776421	intergenic	not near genes	chr2L	22777330	intergenic	not near genes	chr2L	22778240	intergenic	not near genes	chr2L_5_22775001	chr2L_22775001	RAL-799
337	chr2R	4622951	4622988	chr2R	4624110	4624147	1360	5	1157	2.0	3.0	2.5	1.4	1196	chr2R	4622951	intergenic	CR44101 -	chr2R	4623549	intergenic	not near genes	chr2R	4624147	intergenic	not near genes	chr2R_5_4620001	chr2R_4620001	RAL-799
339	chr2R	4750346	4750374	chr2R	4751503	4751528	1360	5	1156	2.5	1.5	2.0	1.7	1182	chr2R	4750346	intron	conu +	chr2R	4750937	intron	conu +	chr2R	4751528	intron	conu +	chr2R_5_4750001	chr2R_4750001	RAL-799
351	chr2R	5869275	5869301	chr2R	5874351	5874377	flea	6	5076	3.5	2.5	3.0	1.5	5102	chr2R	5869275	intergenic	not near genes	chr2R	5871826	intergenic	not near genes	chr2R	5874377	intergenic	not near genes	chr2R_6_5870001	chr2R_5870001	RAL-799
355	chr2R	6096723	6096749	chr2R	6101917	6101945	BS	10	5196	3.5	4.0	3.8	2.1	5222	chr2R	6096723	intron	EcR -	chr2R	6099334	intron	EcR -	chr2R	6101945	intron	EcR -	chr2R_10_6095001	chr2R_6095001	RAL-799
362	chr2R	6952164	6952181	chr2R	6959744	6959761	opus	4	7580	1.5	1.0	1.2	1.8	7597	chr2R	6952164	intron,intron	mim -,CheB42c -	chr2R	6955962	intron,intron	mim -,CheB42c -	chr2R	6959761	intron,intron	mim -,CheB42c -	chr2R_4_6955001	chr2R_6955001	RAL-799
368	chr2R	7139947	7139956	chr2R	7141423	7141448	hopper2	6	1489	3.0	3.0	3.0	1.5	1501	chr2R	7139947	intergenic	not near genes	chr2R	7140698	intergenic	not near genes	chr2R	7141448	intergenic	not near genes	chr2R_6_7140001	chr2R_7140001	RAL-799
369	chr2R	7196572	7196596	chr2R	7201347	7201371	F-element	5	4775	1.5	3.0	2.2	1.6	4799	chr2R	7196572	intron	pk +	chr2R	7198972	intron	pk +	chr2R	7201371	intron	pk +	chr2R_5_7195001	chr2R_7195001	RAL-799
370	chr2R	7235817	7235841	chr2R	7240909	7240933	jockey	5	5091	4.5	1.5	3.0	1.2	5116	chr2R	7235817	intergenic	not near genes	chr2R	7238375	intergenic	not near genes	chr2R	7240933	intergenic	not near genes	chr2R_5_7235001	chr2R_7235001	RAL-799
376	chr2R	7815677	7815703	chr2R	7822146	7822172	Burdock	4	6468	0.5	2.0	1.2	1.8	6495	chr2R	7815677	intergenic	CG1882 +	chr2R	7818924	intergenic	not near genes	chr2R	7822172	3` UTR	cathD -	chr2R_4_7815001	chr2R_7815001	RAL-799
377	chr2R	7869191	7869216	chr2R	7873977	7874002	Doc	6	4785	3.0	1.0	2.0	2.0	4811	chr2R	7869191	intron	Dgk -	chr2R	7871596	intron	Dgk -	chr2R	7874002	intron	Dgk -	chr2R_6_7870001	chr2R_7870001	RAL-799
380	chr2R	8160936	8160950	chr2R	8161026	8161039	1360	6	89	4.5	8.5	6.5	0.8	103	chr2R	8160936	intron	CG8708 -	chr2R	8160988	intron	CG8708 -	chr2R	8161039	intron	CG8708 -	chr2R_6_8160001	chr2R_8160001	RAL-799
383	chr2R	8330869	8330873	chr2R	8331355	8331359	roo	4	486	6.5	2.5	4.5	0.7	490	chr2R	8330869	intron	pdm3 +	chr2R	8331114	intron	pdm3 +	chr2R	8331359	intron	pdm3 +	chr2R_4_8330001	chr2R_8330001	RAL-799
386	chr2R	8398213	8398238	chr2R	8402991	8403019	Doc	7	4778	2.5	4.0	3.2	1.7	4806	chr2R	8398213	intron	CG2121 -	chr2R	8400616	intron	CG2121 -	chr2R	8403019	intron	CG2121 -	chr2R_7_8400001	chr2R_8400001	RAL-799
389	chr2R	8566040	8566062	chr2R	8566992	8567014	1360	6	952	2.0	4.5	3.2	1.4	974	chr2R	8566040	5` UTR	Cyp6a14 -	chr2R	8566527	5` UTR	Cyp6a14 -	chr2R	8567014	5` UTR	Cyp6a14 -	chr2R_6_8565001	chr2R_8565001	RAL-799
391	chr2R	8777933	8777944	chr2R	8784137	8784148	diver	4	6204	0.5	4.5	2.5	1.1	6215	chr2R	8777933	intergenic	not near genes	chr2R	8781040	intergenic	not near genes	chr2R	8784148	intergenic	not near genes	chr2R_4_8780001	chr2R_8780001	RAL-799
395	chr2R	9151308	9151328	chr2R	9157778	9157798	Burdock	6	6470	0.5	2.5	1.5	2.4	6490	chr2R	9151308	3` UTR	CG30345 +	chr2R	9154553	intergenic	not near genes	chr2R	9157798	intergenic	CG8008 -	chr2R_6_9150001	chr2R_9150001	RAL-799
396	chr2R	9212705	9212712	chr2R	9213184	9213198	roo	4	484	4.5	3.5	4.0	0.8	493	chr2R	9212705	intergenic	CR45309 +	chr2R	9212952	intergenic	CR45309 +	chr2R	9213198	5` UTR	CR45309 +	chr2R_4_9210001	chr2R_9210001	RAL-799
406	chr2R	9726610	9726622	chr2R	9734161	9734173	17.6	4	7551	5.0	1.0	3.0	1.0	7563	chr2R	9726610	intron	sqa -	chr2R	9730392	intron	sqa -	chr2R	9734173	intron	sqa -	chr2R_4_9730001	chr2R_9730001	RAL-799
408	chr2R	9945431	9945471	chr2R	9945626	9945664	BS	8	192	1.0	2.5	1.8	2.9	233	chr2R	9945431	intron	Mef2 -	chr2R	9945548	intron	Mef2 -	chr2R	9945664	intron	Mef2 -	chr2R_8_9945001	chr2R_9945001	RAL-799
411	chr2R	10005848	10005881	chr2R	10007013	10007041	1360	12	1164	3.5	2.5	3.0	3.0	1193	chr2R	10005848	intron	Pka-R2 -	chr2R	10006444	intron	Pka-R2 -	chr2R	10007041	intron	Pka-R2 -	chr2R_12_10005001	chr2R_10005001	RAL-799
414	chr2R	10176875	10176906	chr2R	10186045	10186076	roo	5	9170	0.5	1.0	0.8	2.8	9201	chr2R	10176875	intron	KCNQ -	chr2R	10181476	intron	KCNQ -	chr2R	10186076	intron	KCNQ -	chr2R_5_10180001	chr2R_10180001	RAL-799
428	chr2R	10585574	10585579	chr2R	10594157	10594162	Tirant	4	8583	3.0	1.5	2.2	1.2	8588	chr2R	10585574	intron	psq +	chr2R	10589868	intron	psq +	chr2R	10594162	intron	psq +	chr2R_4_10585001	chr2R_10585001	RAL-799
434	chr2R	10948026	10948049	chr2R	10955576	10955599	17.6	6	7550	1.5	2.5	2.0	2.0	7573	chr2R	10948026	intergenic	not near genes	chr2R	10951812	intergenic	not near genes	chr2R	10955599	intergenic	not near genes	chr2R_6_10950001	chr2R_10950001	RAL-799
439	chr2R	11207815	11207843	chr2R	11208008	11208036	BS	8	193	4.5	1.0	2.8	2.1	221	chr2R	11207815	intron	shn +	chr2R	11207926	intron	shn +	chr2R	11208036	intron	shn +	chr2R_8_11205001	chr2R_11205001	RAL-799
443	chr2R	11472651	11472680	chr2R	11473848	11473877	pogo	5	1193	1.5	1.0	1.2	2.3	1226	chr2R	11472651	intergenic	not near genes	chr2R	11473264	intergenic	not near genes	chr2R	11473877	intergenic	not near genes	chr2R_5_11470001	chr2R_11470001	RAL-799
457	chr2R	12501688	12501723	chr2R	12503849	12503885	Rt1c	6	2162	2.0	2.0	2.0	2.0	2197	chr2R	12501688	intron	fdl -	chr2R	12502786	intron	fdl -	chr2R	12503885	intron	fdl -	chr2R_6_12500001	chr2R_12500001	RAL-799
462	chr2R	12707528	12707544	chr2R	12715894	12715910	roo	9	8366	1.0	2.0	1.5	3.6	8382	chr2R	12707528	intron	CG42663 +	chr2R	12711719	intron	CG42663 +	chr2R	12715910	intron	CG42663 +	chr2R_9_12710001	chr2R_12710001	RAL-799
463	chr2R	12789299	12789327	chr2R	12797662	12797687	roo	10	8361	2.0	4.0	3.0	2.5	8388	chr2R	12789299	intron,3` UTR	sca +,CR45137 -	chr2R	12793493	intron,intron	sca +,CR45137 -	chr2R	12797687	intron,3` UTR	sca +,CR45137 -	chr2R_10_12790001	chr2R_12790001	RAL-799
464	chr2R	12819450	12819479	chr2R	12824527	12824556	jockey	4	5077	2.0	2.0	2.0	1.3	5106	chr2R	12819450	intergenic	not near genes	chr2R	12822003	intergenic	not near genes	chr2R	12824556	intergenic	not near genes	chr2R_4_12820001	chr2R_12820001	RAL-799
466	chr2R	13136839	13136870	chr2R	13141637	13141668	Doc	9	4797	7.5	4.5	6.0	1.3	4829	chr2R	13136839	exon	Cap-G +	chr2R	13139254	intron	Cap-G +	chr2R	13141668	intron	Cap-G +	chr2R_9_13135001	chr2R_13135001	RAL-799
472	chr2R	13580502	13580532	chr2R	13580852	13580882	jockey	5	350	0.0	2.5	1.2	2.3	380	chr2R	13580502	3` UTR	CG6191 -	chr2R	13580692	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580882	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_5_13580001	chr2R_13580001	RAL-799
475	chr2R	13728141	13728157	chr2R	13735798	13735814	opus	6	7657	3.0	3.0	3.0	1.5	7673	chr2R	13728141	intron	fas +	chr2R	13731978	intron	fas +	chr2R	13735814	intron	fas +	chr2R_6_13730001	chr2R_13730001	RAL-799
482	chr2R	14467307	14467325	chr2R	14476464	14476482	roo	6	9157	1.0	4.0	2.5	1.7	9175	chr2R	14467307	intergenic	not near genes	chr2R	14471894	intergenic	not near genes	chr2R	14476482	5` UTR	CR44462 +	chr2R_6_14470001	chr2R_14470001	RAL-799
489	chr2R	14889210	14889236	chr2R	14897818	14897844	Max-element	8	8608	3.5	0.0	1.8	2.9	8634	chr2R	14889210	intergenic	Cyp6a8 -	chr2R	14893527	intergenic	not near genes	chr2R	14897844	intergenic	not near genes	chr2R_8_14890001	chr2R_14890001	RAL-799
493	chr2R	15004732	15004760	chr2R	15005061	15005089	jockey	7	329	1.5	2.5	2.0	2.3	357	chr2R	15004732	intergenic	not near genes	chr2R	15004910	intergenic	not near genes	chr2R	15005089	intergenic	not near genes	chr2R_7_15000001	chr2R_15000001	RAL-799
497	chr2R	15119317	15119349	chr2R	15127798	15127824	Tirant	7	8480	2.5	4.5	3.5	1.6	8507	chr2R	15119317	intron	chn +	chr2R	15123570	intron	chn +	chr2R	15127824	intron	chn +	chr2R_7_15120001	chr2R_15120001	RAL-799
517	chr2R	17147243	17147264	chr2R	17152273	17152295	jockey	4	5031	4.0	3.0	3.5	0.9	5052	chr2R	17147243	intergenic	not near genes	chr2R	17149769	intergenic	not near genes	chr2R	17152295	intergenic	not near genes	chr2R_4_17145001	chr2R_17145001	RAL-799
520	chr2R	17236512	17236536	chr2R	17241716	17241740	copia	10	5204	3.0	1.5	2.2	3.1	5228	chr2R	17236512	intron	mbl +	chr2R	17239126	intron	mbl +	chr2R	17241740	intron	mbl +	chr2R_10_17235001	chr2R_17235001	RAL-799
523	chr2R	17784025	17784052	chr2R	17784266	17784293	pogo	7	240	3.0	4.5	3.8	1.5	268	chr2R	17784025	intergenic	mir-31a -	chr2R	17784159	intergenic	mir-31a -	chr2R	17784293	intergenic	mir-31a -	chr2R_7_17780001	chr2R_17780001	RAL-799
526	chr2R	18045672	18045702	chr2R	18046024	18046054	jockey	5	352	2.0	1.0	1.5	2.0	382	chr2R	18045672	intergenic	not near genes	chr2R	18045863	intergenic	not near genes	chr2R	18046054	intergenic	CG5767 -	chr2R_5_18045001	chr2R_18045001	RAL-799
529	chr2R	18358395	18358412	chr2R	18372607	18372624	roo	5	14212	4.0	5.0	4.5	0.9	14229	chr2R	18358395	intergenic	not near genes	chr2R	18365510	intergenic	not near genes	chr2R	18372624	intergenic	not near genes	chr2R_5_18365001	chr2R_18365001	RAL-799
531	chr2R	18487848	18487851	chr2R	18495317	18495319	blood	5	7469	0.0	4.0	2.0	1.7	7471	chr2R	18487848	intron	CG30116 -	chr2R	18491584	intron	CG30116 -	chr2R	18495319	intron	CG30116 -	chr2R_5_18490001	chr2R_18490001	RAL-799
535	chr2R	18575808	18575828	chr2R	18581991	18582012	3S18	5	6186	2.5	2.0	2.2	1.6	6204	chr2R	18575808	intron	GEFmeso -	chr2R	18578910	intron	GEFmeso -	chr2R	18582012	intron	GEFmeso -	chr2R_5_18575001	chr2R_18575001	RAL-799
536	chr2R	18590866	18590900	chr2R	18600018	18600051	roo	10	9151	3.0	1.0	2.0	3.3	9185	chr2R	18590866	intron	GEFmeso -	chr2R	18595458	intron	GEFmeso -	chr2R	18600051	intron	GEFmeso -	chr2R_10_18595001	chr2R_18595001	RAL-799
550	chr2R	19715836	19715852	chr2R	19723325	19723341	blood	5	7489	5.0	5.5	5.2	0.8	7505	chr2R	19715836	intergenic	not near genes	chr2R	19719588	intergenic	not near genes	chr2R	19723341	intergenic	not near genes	chr2R_5_19715001	chr2R_19715001	RAL-799
552	chr2R	19776594	19776629	chr2R	19779917	19779952	jockey	6	3323	0.0	3.5	1.8	2.1	3358	chr2R	19776594	intergenic	not near genes	chr2R	19778273	intergenic	not near genes	chr2R	19779952	intergenic	not near genes	chr2R_6_19775001	chr2R_19775001	RAL-799
560	chr2R	20739456	20739478	chr2R	20744223	20744246	F-element	7	4767	2.5	4.5	3.5	1.6	4790	chr2R	20739456	intron	dpr +	chr2R	20741851	intron	dpr +	chr2R	20744246	intron	dpr +	chr2R_7_20740001	chr2R_20740001	RAL-799
576	chr2R	21738275	21738305	chr2R	21747435	21747439	roo	8	9155	1.0	2.5	1.8	2.9	9164	chr2R	21738275	intergenic	not near genes	chr2R	21742857	intergenic	not near genes	chr2R	21747439	intergenic	not near genes	chr2R_8_21740001	chr2R_21740001	RAL-799
578	chr2R	21753100	21753115	chr2R	21753571	21753600	roo	4	482	2.5	2.0	2.2	1.2	500	chr2R	21753100	intergenic	not near genes	chr2R	21753350	intergenic	not near genes	chr2R	21753600	intergenic	not near genes	chr2R_4_21750001	chr2R_21750001	RAL-799
579	chr2R	21809526	21809553	chr2R	21817766	21817793	roo	11	8240	3.0	4.0	3.5	2.4	8267	chr2R	21809526	intergenic	not near genes	chr2R	21813660	intergenic	not near genes	chr2R	21817793	intergenic	not near genes	chr2R_11_21810001	chr2R_21810001	RAL-799
587	chr2R	22349690	22349727	chr2R	22351474	22351510	jockey	14	1784	1.5	3.5	2.5	4.0	1820	chr2R	22349690	intron	Liprin-gamma -	chr2R	22350600	intron	Liprin-gamma -	chr2R	22351510	intron	Liprin-gamma -	chr2R_14_22350001	chr2R_22350001	RAL-799
590	chr2R	22525748	22525782	chr2R	22529303	22529337	jockey	6	3555	0.0	3.0	1.5	2.4	3589	chr2R	22525748	intron	px -	chr2R	22527542	intron	px -	chr2R	22529337	intron	px -	chr2R_6_22525001	chr2R_22525001	RAL-799
594	chr2R	22729459	22729464	chr2R	22729667	22729672	INE-1	5	208	3.5	1.5	2.5	1.4	213	chr2R	22729459	intron	jbug -	chr2R	22729566	intron	jbug -	chr2R	22729672	intron	jbug -	chr2R_5_22725001	chr2R_22725001	RAL-799
596	chr2R	22774962	22774999	chr2R	22775381	22775418	jockey	10	418	4.0	2.0	3.0	2.5	456	chr2R	22774962	intron	CG42260 -	chr2R	22775190	intron	CG42260 -	chr2R	22775418	intron	CG42260 -	chr2R_10_22775001	chr2R_22775001	RAL-799
600	chr2R	23402623	23402641	chr2R	23407699	23407717	flea	5	5076	2.0	5.5	3.8	1.0	5094	chr2R	23402623	intergenic	CG3520 -	chr2R	23405170	intergenic	not near genes	chr2R	23407717	intergenic	not near genes	chr2R_5_23405001	chr2R_23405001	RAL-799
603	chr2R	23529580	23529600	chr2R	23537149	23537174	412	10	7572	4.5	5.5	5.0	1.7	7594	chr2R	23529580	intron	bw -	chr2R	23533377	intron	bw -	chr2R	23537174	exon	bw -	chr2R_10_23530001	chr2R_23530001	RAL-799
606	chr2R	24147067	24147090	chr2R	24154645	24154668	412	7	7578	2.0	3.0	2.5	2.0	7601	chr2R	24147067	intron	Dat +	chr2R	24150868	intron	Dat +	chr2R	24154668	intron	Dat +	chr2R_7_24150001	chr2R_24150001	RAL-799
607	chr2R	24177237	24177269	chr2R	24184722	24184754	412	8	7485	2.0	3.0	2.5	2.3	7517	chr2R	24177237	3` UTR	Nop60B +	chr2R	24180996	intron	Nop60B +	chr2R	24184754	3` UTR	Nop60B +	chr2R_8_24180001	chr2R_24180001	RAL-799
610	chr2R	24353434	24353458	chr2R	24361796	24361820	roo	10	8362	0.5	1.5	1.0	5.0	8386	chr2R	24353434	intron,intron	bs +,CR44811 -	chr2R	24357627	intron,intron	bs +,CR44811 -	chr2R	24361820	intron,intron	bs +,CR44811 -	chr2R_10_24355001	chr2R_24355001	RAL-799
616	chr2R	24727887	24727918	chr2R	24735395	24735425	mdg1	17	7506	2.5	5.0	3.8	3.5	7538	chr2R	24727887	intron	Mid1 -	chr2R	24731656	intron	Mid1 -	chr2R	24735425	intron	Mid1 -	chr2R_17_24730001	chr2R_24730001	RAL-799
617	chr2R	24763610	24763640	chr2R	24765586	24765616	G2	16	1973	3.0	4.5	3.8	3.3	2006	chr2R	24763610	exon	CG3894 +	chr2R	24764613	intron	CG3894 +	chr2R	24765616	exon	CG3894 +	chr2R_16_24760001	chr2R_24760001	RAL-799
625	chr2R	25141654	25141676	chr2R	25159344	25159366	roo	6	17690	3.5	2.5	3.0	1.5	17712	chr2R	25141654	intergenic	not near genes	chr2R	25150510	intergenic	not near genes	chr2R	25159366	intergenic	not near genes	chr2R_6_25150001	chr2R_25150001	RAL-799
634	chr3L	402687	402716	chr3L	409740	409769	297	9	7053	5.0	3.5	4.2	1.7	7082	chr3L	402687	intergenic	not near genes	chr3L	406228	intergenic	not near genes	chr3L	409769	intergenic	not near genes	chr3L_9_405001	chr3L_405001	RAL-799
637	chr3L	858009	858021	chr3L	866489	866502	Tirant	4	8480	1.0	3.5	2.2	1.2	8493	chr3L	858009	intergenic	not near genes	chr3L	862256	intergenic	not near genes	chr3L	866502	5` UTR	CG12502 +	chr3L_4_860001	chr3L_860001	RAL-799
638	chr3L	925179	925208	chr3L	932605	932634	mdg1	7	7426	3.5	3.5	3.5	1.6	7455	chr3L	925179	intron	Glut1 +	chr3L	928906	intron	Glut1 +	chr3L	932634	intron	Glut1 +	chr3L_7_925001	chr3L_925001	RAL-799
640	chr3L	939773	939798	chr3L	940893	940918	jockey	7	1120	4.0	4.5	4.2	1.3	1145	chr3L	939773	intron	Glut1 +	chr3L	940346	intron	Glut1 +	chr3L	940918	intron	Glut1 +	chr3L_7_940001	chr3L_940001	RAL-799
645	chr3L	1154134	1154155	chr3L	1163283	1163305	roo	5	9150	2.0	0.0	1.0	2.5	9171	chr3L	1154134	intron	bab2 -	chr3L	1158720	intron	bab2 -	chr3L	1163305	intron	bab2 -	chr3L_5_1155001	chr3L_1155001	RAL-799
647	chr3L	1219595	1219625	chr3L	1227328	1227357	412	13	7732	2.5	5.5	4.0	2.6	7762	chr3L	1219595	intron	mwh +	chr3L	1223476	intron	mwh +	chr3L	1227357	intron	mwh +	chr3L_13_1220001	chr3L_1220001	RAL-799
656	chr3L	1506004	1506028	chr3L	1513601	1513625	17.6	7	7597	5.0	2.5	3.8	1.5	7621	chr3L	1506004	intron,intron	Psa +,cue -	chr3L	1509814	intron,intron	Psa +,cue -	chr3L	1513625	intron,intron	Psa +,cue -	chr3L_7_1505001	chr3L_1505001	RAL-799
660	chr3L	1740856	1740880	chr3L	1741100	1741125	pogo	10	245	1.5	3.5	2.5	2.9	269	chr3L	1740856	intron	Gk +	chr3L	1740990	intron	Gk +	chr3L	1741125	intron	Gk +	chr3L_10_1740001	chr3L_1740001	RAL-799
669	chr3L	2447507	2447532	chr3L	2456663	2456688	roo	6	9155	4.0	4.0	4.0	1.2	9181	chr3L	2447507	intron	CG45186 +	chr3L	2452098	intron	CG45186 +	chr3L	2456688	intron	CG45186 +	chr3L_6_2450001	chr3L_2450001	RAL-799
671	chr3L	2751451	2751477	chr3L	2755746	2755771	F-element	7	4295	2.0	1.5	1.8	2.5	4320	chr3L	2751451	intron	Mrtf -	chr3L	2753611	intron	Mrtf -	chr3L	2755771	intron	Mrtf -	chr3L_7_2750001	chr3L_2750001	RAL-799
674	chr3L	2927840	2927871	chr3L	2936117	2936148	Tirant	7	8276	2.5	4.0	3.2	1.7	8308	chr3L	2927840	intron	Shab +	chr3L	2931994	intron	Shab +	chr3L	2936148	intron	Shab +	chr3L_7_2930001	chr3L_2930001	RAL-799
675	chr3L	3061294	3061317	chr3L	3069877	3069899	Tirant	5	8582	2.5	2.0	2.2	1.6	8605	chr3L	3061294	intron	CG32486 -	chr3L	3065596	intron	CG32486 -	chr3L	3069899	intron	CG32486 -	chr3L_5_3065001	chr3L_3065001	RAL-799
679	chr3L	3281460	3281474	chr3L	3281956	3281970	Doc	7	495	1.0	9.5	5.2	1.1	510	chr3L	3281460	intron	CG12017 +	chr3L	3281715	intron	CG12017 +	chr3L	3281970	intron	CG12017 +	chr3L_7_3280001	chr3L_3280001	RAL-799
684	chr3L	3475086	3475109	chr3L	3475529	3475553	jockey	10	444	1.0	6.0	3.5	2.2	467	chr3L	3475086	intron	CG42324 +	chr3L	3475320	intron	CG42324 +	chr3L	3475553	intron	CG42324 +	chr3L_10_3475001	chr3L_3475001	RAL-799
696	chr3L	4328738	4328765	chr3L	4336236	4336263	412	8	7498	1.0	2.5	1.8	2.9	7525	chr3L	4328738	intron	Cip4 -	chr3L	4332500	intron	Cip4 -	chr3L	4336263	intron	Cip4 -	chr3L_8_4330001	chr3L_4330001	RAL-799
703	chr3L	5034156	5034180	chr3L	5043308	5043332	roo	5	9151	2.0	2.5	2.2	1.6	9176	chr3L	5034156	intron	Con -	chr3L	5038744	intron	Con -	chr3L	5043332	intron	Con -	chr3L_5_5035001	chr3L_5035001	RAL-799
708	chr3L	5537725	5537747	chr3L	5538060	5538089	jockey	4	340	0.5	1.5	1.0	2.0	364	chr3L	5537725	intergenic	not near genes	chr3L	5537907	intergenic	not near genes	chr3L	5538089	intergenic	CG10625 -	chr3L_4_5535001	chr3L_5535001	RAL-799
710	chr3L	5910034	5910061	chr3L	5910274	5910302	pogo	7	240	1.5	3.0	2.2	2.2	268	chr3L	5910034	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910302	intron	CG13288 +	chr3L_7_5910001	chr3L_5910001	RAL-799
711	chr3L	5926315	5926350	chr3L	5926504	5926540	BS	9	190	1.0	3.5	2.2	2.8	225	chr3L	5926315	intron	Vap-33B +	chr3L	5926428	intron	Vap-33B +	chr3L	5926540	intron	Vap-33B +	chr3L_9_5925001	chr3L_5925001	RAL-799
717	chr3L	6220915	6220946	chr3L	6230067	6230098	roo	14	9151	3.5	1.5	2.5	4.0	9183	chr3L	6220915	5` UTR	pncr008:3L +	chr3L	6225506	intergenic	not near genes	chr3L	6230098	intergenic	not near genes	chr3L_14_6225001	chr3L_6225001	RAL-799
719	chr3L	6335012	6335033	chr3L	6335480	6335503	297	5	470	2.0	3.0	2.5	1.4	491	chr3L	6335012	intron	CG13300 -	chr3L	6335258	intron	CG13300 -	chr3L	6335503	intron	CG13300 -	chr3L_5_6335001	chr3L_6335001	RAL-799
720	chr3L	6405658	6405690	chr3L	6432121	6432154	roo	4	26464	0.5	2.0	1.2	1.8	26496	chr3L	6405658	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432154	intron	CG42747 +	chr3L_4_6415001	chr3L_6415001	RAL-799
722	chr3L	6855931	6855944	chr3L	6860715	6860728	Doc	5	4784	5.0	3.5	4.2	1.0	4797	chr3L	6855931	intergenic	not near genes	chr3L	6858330	intergenic	not near genes	chr3L	6860728	intergenic	not near genes	chr3L_5_6855001	chr3L_6855001	RAL-799
723	chr3L	6887515	6887550	chr3L	6895007	6895040	roo	9	7492	5.0	1.5	3.2	2.1	7525	chr3L	6887515	intergenic	not near genes	chr3L	6891278	intergenic	not near genes	chr3L	6895040	intergenic	not near genes	chr3L_9_6890001	chr3L_6890001	RAL-799
730	chr3L	7377319	7377337	chr3L	7380424	7380442	297	4	3105	2.0	2.5	2.2	1.2	3123	chr3L	7377319	intron	SMSr -	chr3L	7378880	intron	SMSr -	chr3L	7380442	intron	SMSr -	chr3L_4_7375001	chr3L_7375001	RAL-799
737	chr3L	7793713	7793732	chr3L	7800765	7800784	297	6	7052	1.5	1.5	1.5	2.4	7071	chr3L	7793713	intron	CG32369 -	chr3L	7797248	intron	CG32369 -	chr3L	7800784	intron	CG32369 -	chr3L_6_7795001	chr3L_7795001	RAL-799
738	chr3L	7886520	7886547	chr3L	7889038	7889065	Stalker4	5	2518	1.5	4.5	3.0	1.2	2545	chr3L	7886520	intron	CG32365 +	chr3L	7887792	intron	CG32365 +	chr3L	7889065	intron	CG32365 +	chr3L_5_7885001	chr3L_7885001	RAL-799
740	chr3L	7916847	7916857	chr3L	7926018	7926028	roo	5	9171	0.5	2.5	1.5	2.0	9181	chr3L	7916847	3` UTR	syd -	chr3L	7921438	intron	syd -	chr3L	7926028	3` UTR	syd -	chr3L_5_7920001	chr3L_7920001	RAL-799
745	chr3L	8481774	8481802	chr3L	8490933	8490961	roo	9	9158	1.0	3.0	2.0	3.0	9187	chr3L	8481774	intron	CG43163 -	chr3L	8486368	intron	CG43163 -	chr3L	8490961	intron	CG43163 -	chr3L_9_8485001	chr3L_8485001	RAL-799
746	chr3L	8498299	8498325	chr3L	8505766	8505792	blood	6	7467	3.5	2.0	2.8	1.6	7493	chr3L	8498299	intron	CG43163 -	chr3L	8502046	intron	CG43163 -	chr3L	8505792	intron	CG43163 -	chr3L_6_8500001	chr3L_8500001	RAL-799
748	chr3L	8791280	8791288	chr3L	8796698	8796708	I-element	6	5420	4.0	0.0	2.0	2.0	5428	chr3L	8791280	exon	Fhos +	chr3L	8793994	intron	Fhos +	chr3L	8796708	intron	Fhos +	chr3L_6_8790001	chr3L_8790001	RAL-799
750	chr3L	9076935	9076950	chr3L	9084495	9084510	412	9	7559	6.5	3.0	4.8	1.6	7575	chr3L	9076935	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084510	exon	Tequila +	chr3L_9_9080001	chr3L_9080001	RAL-799
752	chr3L	9130565	9130577	chr3L	9134326	9134337	412	4	3761	3.5	4.5	4.0	0.8	3772	chr3L	9130565	intergenic	bol -	chr3L	9132451	intergenic	not near genes	chr3L	9134337	intergenic	Dhpr +	chr3L_4_9130001	chr3L_9130001	RAL-799
753	chr3L	9164705	9164727	chr3L	9166172	9166190	hobo	5	1466	3.5	0.0	1.8	1.8	1485	chr3L	9164705	intron	Rdl -	chr3L	9165448	intron	Rdl -	chr3L	9166190	intron	Rdl -	chr3L_5_9165001	chr3L_9165001	RAL-799
754	chr3L	9219243	9219281	chr3L	9219915	9219925	jockey	10	668	4.0	3.0	3.5	2.2	682	chr3L	9219243	intergenic	not near genes	chr3L	9219584	intergenic	not near genes	chr3L	9219925	intergenic	not near genes	chr3L_10_9215001	chr3L_9215001	RAL-799
757	chr3L	9443526	9443539	chr3L	9445317	9445330	S-element	4	1790	1.0	1.5	1.2	1.8	1804	chr3L	9443526	intron	CG33926 +	chr3L	9444428	intron	CG33926 +	chr3L	9445330	intron	CG33926 +	chr3L_4_9440001	chr3L_9440001	RAL-799
758	chr3L	9575911	9575935	chr3L	9580989	9581013	jockey	12	5077	2.5	3.0	2.8	3.2	5102	chr3L	9575911	intron	CG42673 +	chr3L	9578462	intron	CG42673 +	chr3L	9581013	intron	CG42673 +	chr3L_12_9575001	chr3L_9575001	RAL-799
772	chr3L	10414944	10414975	chr3L	10417316	10417347	Doc	5	2372	0.5	3.0	1.8	1.8	2403	chr3L	10414944	intergenic	CG12362 +	chr3L	10416146	intergenic	not near genes	chr3L	10417347	intergenic	not near genes	chr3L_5_10415001	chr3L_10415001	RAL-799
783	chr3L	11105299	11105327	chr3L	11107010	11107038	X-element	5	1711	2.5	4.5	3.5	1.1	1739	chr3L	11105299	intergenic	not near genes	chr3L	11106168	intergenic	not near genes	chr3L	11107038	exon	CG32073 -	chr3L_5_11105001	chr3L_11105001	RAL-799
789	chr3L	11329689	11329726	chr3L	11332894	11332900	jockey	5	3198	2.5	1.5	2.0	1.7	3211	chr3L	11329689	intergenic	not near genes	chr3L	11331294	intergenic	not near genes	chr3L	11332900	intergenic	not near genes	chr3L_5_11330001	chr3L_11330001	RAL-799
792	chr3L	11564790	11564811	chr3L	11572415	11572435	412	4	7625	3.5	2.5	3.0	1.0	7645	chr3L	11564790	exon	CG33267 +	chr3L	11568612	intron	CG33267 +	chr3L	11572435	exon	CG33267 +	chr3L_4_11565001	chr3L_11565001	RAL-799
796	chr3L	11723081	11723116	chr3L	11727876	11727911	Doc	4	4794	1.0	2.0	1.5	1.6	4830	chr3L	11723081	3` UTR	Bmcp +	chr3L	11725496	intron	Bmcp +	chr3L	11727911	3` UTR	Bmcp +	chr3L_4_11725001	chr3L_11725001	RAL-799
818	chr3L	12874930	12874962	chr3L	12877215	12877254	jockey	7	2291	1.0	0.5	0.8	3.9	2324	chr3L	12874930	intergenic	not near genes	chr3L	12876092	intergenic	not near genes	chr3L	12877254	intergenic	not near genes	chr3L_7_12875001	chr3L_12875001	RAL-799
822	chr3L	12957803	12957818	chr3L	12962285	12962300	copia	4	4482	1.0	1.5	1.2	1.8	4497	chr3L	12957803	intergenic	not near genes	chr3L	12960052	intergenic	not near genes	chr3L	12962300	intergenic	not near genes	chr3L_4_12960001	chr3L_12960001	RAL-799
828	chr3L	13525155	13525190	chr3L	13532950	13532986	roo	10	7796	2.5	5.0	3.8	2.1	7831	chr3L	13525155	intergenic	not near genes	chr3L	13529070	intergenic	not near genes	chr3L	13532986	intergenic	not near genes	chr3L_10_13525001	chr3L_13525001	RAL-799
835	chr3L	13804545	13804579	chr3L	13822831	13822865	roo	9	18286	0.5	2.5	1.5	3.6	18320	chr3L	13804545	intergenic	not near genes	chr3L	13813705	intergenic	not near genes	chr3L	13822865	intergenic	not near genes	chr3L_9_13810001	chr3L_13810001	RAL-799
840	chr3L	14245569	14245591	chr3L	14245663	14245685	1360	9	93	4.0	2.5	3.2	2.1	116	chr3L	14245569	3` UTR	CR44561 -	chr3L	14245627	3` UTR	CR44561 -	chr3L	14245685	3` UTR	CR44561 -	chr3L_9_14245001	chr3L_14245001	RAL-799
842	chr3L	14295984	14296002	chr3L	14296470	14296488	roo	5	486	5.5	1.5	3.5	1.1	504	chr3L	14295984	intron	fz +	chr3L	14296236	intron	fz +	chr3L	14296488	intron	fz +	chr3L_5_14295001	chr3L_14295001	RAL-799
843	chr3L	14312028	14312055	chr3L	14316834	14316846	X-element	5	4808	4.0	0.5	2.2	1.6	4818	chr3L	14312028	exon	fz +	chr3L	14314437	intron	fz +	chr3L	14316846	intron	fz +	chr3L_5_14310001	chr3L_14310001	RAL-799
846	chr3L	14468449	14468477	chr3L	14473653	14473683	copia	5	5206	2.0	1.0	1.5	2.0	5234	chr3L	14468449	intron	bbg -	chr3L	14471066	intron	bbg -	chr3L	14473683	intron	bbg -	chr3L_5_14470001	chr3L_14470001	RAL-799
847	chr3L	14514693	14514696	chr3L	22908066	22908067	Stalker2	5	8393373	10.0	21.5	15.8	0.3	8393374	chr3L	14514693	intron	bbg -	chr3L	18711380	intergenic	not near genes	chr3L	22908067	intergenic	not near genes	chr3L_5_18710001	chr3L_18710001	RAL-799
852	chr3L	14721186	14721202	chr3L	14723027	14723044	Rt1c	4	1841	6.0	4.5	5.2	0.6	1858	chr3L	14721186	intron	ome +	chr3L	14722115	intron	ome +	chr3L	14723044	intron	ome +	chr3L_4_14720001	chr3L_14720001	RAL-799
865	chr3L	15295767	15295795	chr3L	15298610	15298638	gypsy5	8	2842	2.5	5.0	3.8	1.7	2871	chr3L	15295767	intergenic	not near genes	chr3L	15297202	intergenic	not near genes	chr3L	15298638	intergenic	Best4 +	chr3L_8_15295001	chr3L_15295001	RAL-799
876	chr3L	15899232	15899262	chr3L	15899791	15899812	jockey	7	561	1.5	4.5	3.0	1.8	580	chr3L	15899232	intergenic	pHCl -	chr3L	15899522	intergenic	pHCl -	chr3L	15899812	intergenic	sff -	chr3L_7_15895001	chr3L_15895001	RAL-799
879	chr3L	16184087	16184122	chr3L	16188931	16188966	X-element	11	4844	1.0	1.5	1.2	5.0	4879	chr3L	16184087	intergenic	not near genes	chr3L	16186526	intergenic	not near genes	chr3L	16188966	intergenic	not near genes	chr3L_11_16185001	chr3L_16185001	RAL-799
884	chr3L	16493974	16494010	chr3L	16494491	16494526	jockey	15	516	4.5	2.0	3.2	3.6	552	chr3L	16493974	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494250	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494526	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_15_16490001	chr3L_16490001	RAL-799
888	chr3L	16616518	16616528	chr3L	16621846	16621856	297	4	5328	1.5	2.5	2.0	1.3	5338	chr3L	16616518	3` UTR	Abl -	chr3L	16619187	3` UTR	Abl -	chr3L	16621856	3` UTR	Abl -	chr3L_4_16615001	chr3L_16615001	RAL-799
896	chr3L	16945726	16945758	chr3L	16954879	16954909	roo	21	9150	8.0	0.0	4.0	4.2	9183	chr3L	16945726	exon	Obp73a +	chr3L	16950318	intergenic	not near genes	chr3L	16954909	5` UTR	Nc73EF +	chr3L_21_16950001	chr3L_16950001	RAL-799
898	chr3L	17034936	17034953	chr3L	17035124	17035141	G2	4	188	2.5	2.0	2.2	1.2	205	chr3L	17034936	intergenic	not near genes	chr3L	17035038	intergenic	not near genes	chr3L	17035141	intergenic	not near genes	chr3L_4_17035001	chr3L_17035001	RAL-799
899	chr3L	17085015	17085035	chr3L	17094164	17094183	roo	9	9149	1.5	3.5	2.5	2.6	9168	chr3L	17085015	intron	Rbp6 -	chr3L	17089599	intron	Rbp6 -	chr3L	17094183	intron	Rbp6 -	chr3L_9_17085001	chr3L_17085001	RAL-799
909	chr3L	17730849	17730884	chr3L	17738178	17738214	mdg1	4	7330	0.0	0.0	0.0	4.0	7365	chr3L	17730849	intron	Ccn +	chr3L	17734532	intron	Ccn +	chr3L	17738214	intron	Ccn +	chr3L_4_17730001	chr3L_17730001	RAL-799
910	chr3L	17799813	17799842	chr3L	17801600	17801629	S-element	4	1787	3.0	0.5	1.8	1.4	1816	chr3L	17799813	intron	NUCB1 -	chr3L	17800721	intron	NUCB1 -	chr3L	17801629	intron	NUCB1 -	chr3L_4_17800001	chr3L_17800001	RAL-799
911	chr3L	18047711	18047732	chr3L	18056767	18056789	roo	5	9056	3.0	2.5	2.8	1.3	9078	chr3L	18047711	intron	Eip75B -	chr3L	18052250	intron	Eip75B -	chr3L	18056789	intron	Eip75B -	chr3L_5_18050001	chr3L_18050001	RAL-799
924	chr3L	18506130	18506158	chr3L	18509593	18509621	F-element	9	3463	2.0	1.5	1.8	3.2	3491	chr3L	18506130	intergenic	not near genes	chr3L	18507876	intergenic	not near genes	chr3L	18509621	intergenic	not near genes	chr3L_9_18505001	chr3L_18505001	RAL-799
925	chr3L	18528629	18528654	chr3L	18537790	18537815	roo	5	9161	2.5	1.0	1.8	1.8	9186	chr3L	18528629	intergenic	not near genes	chr3L	18533222	intergenic	not near genes	chr3L	18537815	intergenic	not near genes	chr3L_5_18530001	chr3L_18530001	RAL-799
929	chr3L	18710760	18710791	chr3L	18718712	18718743	Stalker2	10	7952	2.5	2.5	2.5	2.9	7983	chr3L	18710760	intergenic	not near genes	chr3L	18714752	intergenic	not near genes	chr3L	18718743	intergenic	not near genes	chr3L_10_18710001	chr3L_18710001	RAL-799
932	chr3L	18772410	18772441	chr3L	18781091	18781122	roo	7	8681	2.5	0.5	1.5	2.8	8712	chr3L	18772410	intron	ftz-f1 -	chr3L	18776766	intron	ftz-f1 -	chr3L	18781122	intron	ftz-f1 -	chr3L_7_18775001	chr3L_18775001	RAL-799
936	chr3L	19008837	19008843	chr3L	19009174	19009180	jockey	4	336	6.0	0.5	3.2	1.0	343	chr3L	19008837	intron	nkd -	chr3L	19009008	intron	nkd -	chr3L	19009180	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-799
939	chr3L	19115642	19115668	chr3L	19115821	19115846	BS	5	178	5.5	1.5	3.5	1.1	204	chr3L	19115642	intron	CG14082 -	chr3L	19115744	intron	CG14082 -	chr3L	19115846	intron	CG14082 -	chr3L_5_19115001	chr3L_19115001	RAL-799
940	chr3L	19117040	19117073	chr3L	19124487	19124520	mdg1	10	7446	2.0	3.5	2.8	2.6	7480	chr3L	19117040	intron	CG14082 -	chr3L	19120780	intron	CG14082 -	chr3L	19124520	intron	CG14082 -	chr3L_10_19120001	chr3L_19120001	RAL-799
944	chr3L	19208056	19208089	chr3L	19209430	19209454	Doc	7	1373	2.0	1.5	1.8	2.5	1398	chr3L	19208056	intron	fz2 -	chr3L	19208755	intron	fz2 -	chr3L	19209454	intron	fz2 -	chr3L_7_19205001	chr3L_19205001	RAL-799
955	chr3L	19820299	19820317	chr3L	19827848	19827866	412	6	7549	2.0	1.0	1.5	2.4	7567	chr3L	19820299	intron	Deaf1 +	chr3L	19824082	intron	Deaf1 +	chr3L	19827866	intron	Deaf1 +	chr3L_6_19820001	chr3L_19820001	RAL-799
956	chr3L	19861827	19861845	chr3L	19863615	19863631	S-element	6	1786	2.5	2.0	2.2	1.9	1804	chr3L	19861827	5` UTR	CR45433 +	chr3L	19862729	intergenic	not near genes	chr3L	19863631	intergenic	not near genes	chr3L_6_19860001	chr3L_19860001	RAL-799
961	chr3L	20113660	20113686	chr3L	20122916	20122937	roo	4	9255	0.5	0.5	0.5	2.7	9277	chr3L	20113660	intergenic	not near genes	chr3L	20118298	intergenic	not near genes	chr3L	20122937	intergenic	not near genes	chr3L_4_20115001	chr3L_20115001	RAL-799
964	chr3L	20257338	20257357	chr3L	20258458	20258477	pogo	9	1118	3.0	9.0	6.0	1.3	1139	chr3L	20257338	intron	rdgC +	chr3L	20257908	intron	rdgC +	chr3L	20258477	intron	rdgC +	chr3L_9_20255001	chr3L_20255001	RAL-799
969	chr3L	20590064	20590094	chr3L	20590603	20590629	412	6	537	2.0	2.5	2.2	1.9	565	chr3L	20590064	intergenic	not near genes	chr3L	20590346	intergenic	not near genes	chr3L	20590629	intergenic	not near genes	chr3L_6_20590001	chr3L_20590001	RAL-799
973	chr3L	21151863	21151896	chr3L	21156947	21156980	flea	9	5084	2.0	1.0	1.5	3.6	5117	chr3L	21151863	intron	Ac78C -	chr3L	21154422	intron	Ac78C -	chr3L	21156980	intron	Ac78C -	chr3L_9_21150001	chr3L_21150001	RAL-799
975	chr3L	21243746	21243767	chr3L	21251309	21251330	412	4	7563	3.0	5.5	4.2	0.8	7584	chr3L	21243746	intron	Eip78C +	chr3L	21247538	intron	Eip78C +	chr3L	21251330	intron	Eip78C +	chr3L_4_21245001	chr3L_21245001	RAL-799
977	chr3L	21306155	21306178	chr3L	21315314	21315337	roo	6	9159	0.5	2.0	1.2	2.7	9182	chr3L	21306155	3` UTR,3` UTR	CG7632 +,Pc -	chr3L	21310746	intron	Pc -	chr3L	21315337	3` UTR	Pc -	chr3L_6_21310001	chr3L_21310001	RAL-799
979	chr3L	21361729	21361751	chr3L	21362683	21362705	G2	7	953	3.0	4.5	3.8	1.5	976	chr3L	21361729	intergenic	CG32440 +	chr3L	21362217	intergenic	not near genes	chr3L	21362705	intergenic	not near genes	chr3L_7_21360001	chr3L_21360001	RAL-799
985	chr3L	21498836	21498869	chr3L	21500472	21500502	1360	8	1635	1.0	5.0	3.0	2.0	1666	chr3L	21498836	intron	Glg1 -	chr3L	21499669	intron	Glg1 -	chr3L	21500502	intron	Glg1 -	chr3L_8_21495001	chr3L_21495001	RAL-799
988	chr3L	21749313	21749350	chr3L	21754472	21754482	Doc	4	5153	2.5	3.0	2.8	1.1	5169	chr3L	21749313	intron	Syn1 -	chr3L	21751898	intron	Syn1 -	chr3L	21754482	intron	Syn1 -	chr3L_4_21750001	chr3L_21750001	RAL-799
991	chr3L	21868350	21868378	chr3L	21868674	21868702	INE-1	14	324	2.0	2.5	2.2	4.4	352	chr3L	21868350	intron	mub +	chr3L	21868526	intron	mub +	chr3L	21868702	intron	mub +	chr3L_14_21865001	chr3L_21865001	RAL-799
995	chr3L	22099676	22099704	chr3L	22105862	22105890	3S18	7	6186	2.5	2.5	2.5	2.0	6214	chr3L	22099676	intergenic	not near genes	chr3L	22102783	intergenic	not near genes	chr3L	22105890	intergenic	not near genes	chr3L_7_22100001	chr3L_22100001	RAL-799
1003	chr3L	22577615	22577642	chr3L	22582401	22582430	Doc	8	4787	3.0	2.5	2.8	2.1	4815	chr3L	22577615	intergenic	not near genes	chr3L	22580022	intergenic	not near genes	chr3L	22582430	3` UTR	CG14459 -	chr3L_8_22580001	chr3L_22580001	RAL-799
1004	chr3L	22617195	22617217	chr3L	22624643	22624668	blood	6	7451	3.0	2.0	2.5	1.7	7473	chr3L	22617195	intron	CG14459 -	chr3L	22620932	intron	CG14459 -	chr3L	22624668	intron	CG14459 -	chr3L_6_22620001	chr3L_22620001	RAL-799
1005	chr3L	22761391	22761414	chr3L	22766821	22766848	Ivk	4	5433	3.5	1.5	2.5	1.1	5457	chr3L	22761391	intron	SPoCk +	chr3L	22764120	intron	SPoCk +	chr3L	22766848	intron	SPoCk +	chr3L_4_22760001	chr3L_22760001	RAL-799
1007	chr3L	22865982	22866011	chr3L	22867115	22867144	Doc	5	1132	1.0	2.0	1.5	2.0	1162	chr3L	22865982	intron	CG33170 +	chr3L	22866563	intron	CG33170 +	chr3L	22867144	intron	CG33170 +	chr3L_5_22865001	chr3L_22865001	RAL-799
1015	chr3L	24012416	24012430	chr3L	24020757	24020771	roo	5	8340	2.0	4.0	3.0	1.2	8355	chr3L	24012416	intergenic	not near genes	chr3L	24016594	intergenic	not near genes	chr3L	24020771	intergenic	not near genes	chr3L_5_24015001	chr3L_24015001	RAL-799
1016	chr3L	24168631	24168654	chr3L	24176391	24176415	ZAM	10	7759	2.0	1.0	1.5	4.0	7784	chr3L	24168631	intron	Snap25 +	chr3L	24172523	intron	Snap25 +	chr3L	24176415	intron	Snap25 +	chr3L_10_24170001	chr3L_24170001	RAL-799
1022	chr3L	22908066	22908066	chr3L	27698695	27698695	micropia	4	4790629	21.5	0.5	11.0	0.3	4790629	chr3L	22908066	intergenic	not near genes	chr3L	25303380	intron	CG40467 -	chr3L	27698695	intergenic	not near genes	chr3L_4_25300001	chr3L_25300001	RAL-799
1026	chr3R	4206073	4206100	chr3R	4211649	4211675	mdg3	6	5575	2.0	1.0	1.5	2.4	5602	chr3R	4206073	intron	CG14636 -	chr3R	4208874	intron	CG14636 -	chr3R	4211675	intron	CG14636 -	chr3R_6_4205001	chr3R_4205001	RAL-799
1028	chr3R	4366760	4366789	chr3R	4375143	4375172	roo	6	8383	2.5	3.0	2.8	1.6	8412	chr3R	4366760	3` UTR	CG1090 +	chr3R	4370966	intergenic	not near genes	chr3R	4375172	5` UTR	CR44922 +	chr3R_6_4370001	chr3R_4370001	RAL-799
1029	chr3R	4408411	4408425	chr3R	4412715	4412729	Juan	6	4303	0.5	1.0	0.8	3.3	4318	chr3R	4408411	intron	CG32944 -	chr3R	4410570	intron	CG32944 -	chr3R	4412729	intron	CG32944 -	chr3R_6_4410001	chr3R_4410001	RAL-799
1030	chr3R	4609549	4609578	chr3R	4610711	4610742	1360	9	1163	2.5	3.0	2.8	2.4	1193	chr3R	4609549	intergenic	not near genes	chr3R	4610146	intergenic	not near genes	chr3R	4610742	intergenic	not near genes	chr3R_9_4610001	chr3R_4610001	RAL-799
1032	chr3R	4887486	4887501	chr3R	4894863	4894878	rover	5	7377	4.5	3.5	4.0	1.0	7392	chr3R	4887486	intergenic	not near genes	chr3R	4891182	intergenic	not near genes	chr3R	4894878	intergenic	not near genes	chr3R_5_4890001	chr3R_4890001	RAL-799
1034	chr3R	5045860	5045875	chr3R	5052962	5052977	HMS-Beagle	5	7102	4.5	6.0	5.2	0.8	7117	chr3R	5045860	intron	CR43635 -	chr3R	5049418	intergenic	not near genes	chr3R	5052977	intergenic	CR45588 -	chr3R_5_5045001	chr3R_5045001	RAL-799
1035	chr3R	5067986	5068014	chr3R	5073503	5073531	mdg3	5	5516	2.5	3.0	2.8	1.3	5545	chr3R	5067986	intergenic	not near genes	chr3R	5070758	intergenic	not near genes	chr3R	5073531	intergenic	not near genes	chr3R_5_5070001	chr3R_5070001	RAL-799
1039	chr3R	5338397	5338432	chr3R	5343574	5343608	Rt1c	15	5177	2.5	5.0	3.8	3.1	5211	chr3R	5338397	intron	mtd -	chr3R	5341002	intron	mtd -	chr3R	5343608	intron	mtd -	chr3R_15_5340001	chr3R_5340001	RAL-799
1042	chr3R	5746024	5746044	chr3R	5746265	5746285	pogo	7	241	1.5	5.0	3.2	1.7	261	chr3R	5746024	3` UTR	Madm +	chr3R	5746154	3` UTR	Madm +	chr3R	5746285	3` UTR	Madm +	chr3R_7_5745001	chr3R_5745001	RAL-799
1043	chr3R	5747015	5747047	chr3R	5753206	5753238	diver	6	6191	1.0	2.5	1.8	2.1	6223	chr3R	5747015	intergenic	Madm +	chr3R	5750126	intergenic	not near genes	chr3R	5753238	intergenic	CG2091 -	chr3R_6_5750001	chr3R_5750001	RAL-799
1045	chr3R	5809124	5809143	chr3R	5809365	5809384	pogo	6	241	2.5	1.0	1.8	2.1	260	chr3R	5809124	3` UTR	CG11000 +	chr3R	5809254	3` UTR	CG11000 +	chr3R	5809384	3` UTR	CG11000 +	chr3R_6_5805001	chr3R_5805001	RAL-799
1046	chr3R	5822386	5822412	chr3R	5823553	5823579	1360	9	1167	2.0	4.0	3.0	2.2	1193	chr3R	5822386	3` UTR	CG2023 -	chr3R	5822982	3` UTR	CG2023 -	chr3R	5823579	3` UTR	CG2023 -	chr3R_9_5820001	chr3R_5820001	RAL-799
1047	chr3R	5927564	5927592	chr3R	5927804	5927832	pogo	11	240	2.5	3.5	3.0	2.8	268	chr3R	5927564	intron	CG34113 -	chr3R	5927698	intron	CG34113 -	chr3R	5927832	intron	CG34113 -	chr3R_11_5925001	chr3R_5925001	RAL-799
1050	chr3R	6015961	6015991	chr3R	6024442	6024462	Tirant	11	8480	2.5	4.5	3.5	2.4	8501	chr3R	6015961	intergenic	not near genes	chr3R	6020212	intergenic	not near genes	chr3R	6024462	intergenic	not near genes	chr3R_11_6020001	chr3R_6020001	RAL-799
1053	chr3R	6158511	6158541	chr3R	6167094	6167124	Tirant	8	8583	5.5	1.5	3.5	1.8	8613	chr3R	6158511	intergenic	not near genes	chr3R	6162818	intergenic	not near genes	chr3R	6167124	intergenic	CG1077 +	chr3R_8_6160001	chr3R_6160001	RAL-799
1054	chr3R	6175175	6175205	chr3R	6182447	6182475	HMS-Beagle2	4	7272	1.5	2.0	1.8	1.4	7300	chr3R	6175175	intergenic	Osi1 +	chr3R	6178825	intron	CR45194 +	chr3R	6182475	intergenic	CR45194 +	chr3R_4_6175001	chr3R_6175001	RAL-799
1059	chr3R	6737501	6737523	chr3R	6739288	6739310	Doc	4	1787	4.0	3.5	3.8	0.8	1809	chr3R	6737501	intron	pb -	chr3R	6738406	intron	pb -	chr3R	6739310	intron	pb -	chr3R_4_6735001	chr3R_6735001	RAL-799
1073	chr3R	7694575	7694598	chr3R	7713636	7713659	invader3	4	19060	0.5	1.5	1.0	2.0	19084	chr3R	7694575	3` UTR	Nlg1 +	chr3R	7704117	intergenic	not near genes	chr3R	7713659	intergenic	not near genes	chr3R_4_7700001	chr3R_7700001	RAL-799
1075	chr3R	7729476	7729495	chr3R	7737414	7737433	Stalker2	6	7938	3.0	4.5	3.8	1.2	7957	chr3R	7729476	intergenic	not near genes	chr3R	7733454	intergenic	not near genes	chr3R	7737433	intergenic	not near genes	chr3R_6_7730001	chr3R_7730001	RAL-799
1079	chr3R	7849645	7849660	chr3R	7850812	7850827	1360	4	1167	3.0	1.0	2.0	1.3	1182	chr3R	7849645	intron	CG34384 +	chr3R	7850236	intron	CG34384 +	chr3R	7850827	intron	CG34384 +	chr3R_4_7850001	chr3R_7850001	RAL-799
1082	chr3R	8094411	8094439	chr3R	8099716	8099743	Transpac	8	5304	2.0	3.0	2.5	2.3	5332	chr3R	8094411	intron	CG7900 +	chr3R	8097077	intron	CG7900 +	chr3R	8099743	intron	CG7900 +	chr3R_8_8095001	chr3R_8095001	RAL-799
1083	chr3R	8101762	8101791	chr3R	8104846	8104875	G2	10	3084	1.5	1.0	1.2	4.5	3113	chr3R	8101762	exon	CG7900 +	chr3R	8103318	intron	CG7900 +	chr3R	8104875	3` UTR	CG7900 +	chr3R_10_8100001	chr3R_8100001	RAL-799
1086	chr3R	8207562	8207579	chr3R	8208406	8208420	F-element	5	844	2.5	3.5	3.0	1.2	858	chr3R	8207562	intergenic	not near genes	chr3R	8207991	intergenic	not near genes	chr3R	8208420	intergenic	not near genes	chr3R_5_8205001	chr3R_8205001	RAL-799
1090	chr3R	8403006	8403041	chr3R	8412172	8412207	roo	13	9166	4.5	2.5	3.5	2.9	9201	chr3R	8403006	intron	CG45263 -	chr3R	8407606	intron	CG45263 -	chr3R	8412207	intron	CG45263 -	chr3R_13_8405001	chr3R_8405001	RAL-799
1093	chr3R	8570484	8570499	chr3R	8575119	8575128	HMS-Beagle	4	4634	1.5	2.0	1.8	1.4	4644	chr3R	8570484	intergenic	not near genes	chr3R	8572806	intergenic	not near genes	chr3R	8575128	intergenic	not near genes	chr3R_4_8570001	chr3R_8570001	RAL-799
1095	chr3R	8601768	8601796	chr3R	8610921	8610946	roo	10	9152	2.5	2.5	2.5	2.9	9178	chr3R	8601768	intron	5-HT2B +	chr3R	8606357	intron	5-HT2B +	chr3R	8610946	intron	5-HT2B +	chr3R_10_8605001	chr3R_8605001	RAL-799
1097	chr3R	8707364	8707386	chr3R	8709803	8709827	jockey	11	2440	2.5	5.0	3.8	2.3	2463	chr3R	8707364	intergenic	not near genes	chr3R	8708596	intergenic	not near genes	chr3R	8709827	intergenic	not near genes	chr3R_11_8705001	chr3R_8705001	RAL-799
1100	chr3R	8894876	8894905	chr3R	8896032	8896061	1360	4	1156	2.5	2.0	2.2	1.2	1185	chr3R	8894876	intron	pyd -	chr3R	8895468	intron	pyd -	chr3R	8896061	intron	pyd -	chr3R_4_8895001	chr3R_8895001	RAL-799
1105	chr3R	9319578	9319603	chr3R	9320013	9320037	jockey	7	435	5.0	1.5	3.2	1.7	459	chr3R	9319578	intron	CG8861 -	chr3R	9319808	intron	CG8861 -	chr3R	9320037	intron	CG8861 -	chr3R_7_9315001	chr3R_9315001	RAL-799
1112	chr3R	10231789	10231814	chr3R	10237366	10237391	mdg3	6	5576	0.5	1.0	0.8	3.3	5602	chr3R	10231789	intron	CG42795 +	chr3R	10234590	intron	CG42795 +	chr3R	10237391	intron	CG42795 +	chr3R_6_10230001	chr3R_10230001	RAL-799
1125	chr3R	10957867	10957885	chr3R	10963252	10963274	Rt1c	6	5388	7.5	4.0	5.8	0.9	5407	chr3R	10957867	intergenic	not near genes	chr3R	10960570	intergenic	not near genes	chr3R	10963274	intergenic	not near genes	chr3R_6_10960001	chr3R_10960001	RAL-799
1134	chr3R	11379240	11379262	chr3R	11388394	11388417	roo	7	9155	1.0	2.5	1.8	2.5	9177	chr3R	11379240	intron	pros +	chr3R	11383828	intron	pros +	chr3R	11388417	intron	pros +	chr3R_7_11380001	chr3R_11380001	RAL-799
1143	chr3R	11957853	11957877	chr3R	11958136	11958158	S-element	4	282	1.0	0.0	0.5	2.7	305	chr3R	11957853	intergenic	not near genes	chr3R	11958006	intergenic	not near genes	chr3R	11958158	intergenic	not near genes	chr3R_4_11955001	chr3R_11955001	RAL-799
1144	chr3R	12022889	12022913	chr3R	12025066	12025090	pogo	8	2176	0.5	3.0	1.8	2.9	2201	chr3R	12022889	intergenic	not near genes	chr3R	12023990	intergenic	not near genes	chr3R	12025090	intergenic	not near genes	chr3R_8_12020001	chr3R_12020001	RAL-799
1164	chr3R	13517226	13517231	chr3R	13520043	13520048	jockey	4	2817	4.5	0.0	2.2	1.2	2822	chr3R	13517226	intergenic	not near genes	chr3R	13518637	intergenic	not near genes	chr3R	13520048	intergenic	not near genes	chr3R_4_13515001	chr3R_13515001	RAL-799
1191	chr3R	15102498	15102517	chr3R	15109753	15109772	412	5	7255	0.5	1.0	0.8	2.8	7274	chr3R	15102498	intron	CG42788 -	chr3R	15106135	intron	CG42788 -	chr3R	15109772	intron	CG42788 -	chr3R_5_15105001	chr3R_15105001	RAL-799
1197	chr3R	15601164	15601196	chr3R	15608686	15608717	412	6	7520	4.0	1.5	2.8	1.6	7553	chr3R	15601164	intergenic	not near genes	chr3R	15604940	intergenic	not near genes	chr3R	15608717	intergenic	not near genes	chr3R_6_15600001	chr3R_15600001	RAL-799
1198	chr3R	15618736	15618764	chr3R	15626210	15626238	blood	5	7474	0.5	2.5	1.5	2.0	7502	chr3R	15618736	intergenic	not near genes	chr3R	15622487	intergenic	not near genes	chr3R	15626238	intergenic	not near genes	chr3R_5_15620001	chr3R_15620001	RAL-799
1205	chr3R	16189408	16189442	chr3R	16189811	16189845	invader4	6	403	0.5	0.0	0.2	5.0	437	chr3R	16189408	intron	sra +	chr3R	16189626	intron	sra +	chr3R	16189845	intron	sra +	chr3R_6_16185001	chr3R_16185001	RAL-799
1209	chr3R	16756330	16756350	chr3R	16762521	16762540	diver	5	6191	2.5	5.0	3.8	1.0	6210	chr3R	16756330	intron	bxd -	chr3R	16759435	intron	bxd -	chr3R	16762540	intron	bxd -	chr3R_5_16755001	chr3R_16755001	RAL-799
1217	chr3R	17346706	17346716	chr3R	17348269	17348279	F-element	4	1563	2.0	5.5	3.8	0.8	1573	chr3R	17346706	intron	beat-IIa -	chr3R	17347492	intron	beat-IIa -	chr3R	17348279	intron	beat-IIa -	chr3R_4_17345001	chr3R_17345001	RAL-799
1226	chr3R	17925852	17925888	chr3R	17927319	17927355	hobo	13	1465	2.0	2.5	2.2	4.1	1503	chr3R	17925852	intron	cpo +	chr3R	17926604	intron	cpo +	chr3R	17927355	intron	cpo +	chr3R_13_17925001	chr3R_17925001	RAL-799
1228	chr3R	18032790	18032804	chr3R	18040458	18040472	opus	4	7668	0.5	0.5	0.5	2.7	7682	chr3R	18032790	intergenic	not near genes	chr3R	18036631	intergenic	not near genes	chr3R	18040472	intergenic	not near genes	chr3R_4_18035001	chr3R_18035001	RAL-799
1234	chr3R	18606502	18606533	chr3R	18610734	18610765	F-element	10	4232	2.0	2.5	2.2	3.1	4263	chr3R	18606502	intron,intron	qin +,CG14304 -	chr3R	18608634	intron,intron	qin +,CG14304 -	chr3R	18610765	intron,intron	qin +,CG14304 -	chr3R_10_18605001	chr3R_18605001	RAL-799
1247	chr3R	19136406	19136443	chr3R	19139792	19139871	Bari1	5	3395	46.5	11.5	29.0	0.2	3465	chr3R	19136406	exon	Cyp12a4 +	chr3R	19138138	intergenic	not near genes	chr3R	19139871	3` UTR	Ppcs -	chr3R_5_19135001	chr3R_19135001	RAL-799
1263	chr3R	20109545	20109567	chr3R	20114751	20114773	copia	5	5206	1.0	2.0	1.5	2.0	5228	chr3R	20109545	intergenic	not near genes	chr3R	20112159	intergenic	not near genes	chr3R	20114773	intergenic	CG10887 +	chr3R_5_20110001	chr3R_20110001	RAL-799
1265	chr3R	20156694	20156711	chr3R	20165864	20165881	roo	4	9170	3.0	2.5	2.8	1.1	9187	chr3R	20156694	intergenic	not near genes	chr3R	20161288	intergenic	not near genes	chr3R	20165881	intergenic	not near genes	chr3R_4_20160001	chr3R_20160001	RAL-799
1267	chr3R	20266515	20266536	chr3R	20272986	20273007	Burdock	4	6471	4.5	1.0	2.8	1.1	6492	chr3R	20266515	intron	cic +	chr3R	20269761	intron	cic +	chr3R	20273007	intron	cic +	chr3R_4_20265001	chr3R_20265001	RAL-799
1285	chr3R	21141683	21141699	chr3R	21150163	21150180	Tirant	4	8476	3.5	3.0	3.2	1.0	8497	chr3R	21141683	intron	SNF4Agamma +	chr3R	21145932	intron	SNF4Agamma +	chr3R	21150180	intron	SNF4Agamma +	chr3R_4_21145001	chr3R_21145001	RAL-799
1292	chr3R	21761120	21761151	chr3R	21768512	21768543	mdg1	13	7391	3.5	6.0	4.8	2.2	7423	chr3R	21761120	exon	CG42335 +	chr3R	21764832	intron	CG42335 +	chr3R	21768543	exon	CG42335 +	chr3R_13_21760001	chr3R_21760001	RAL-799
1310	chr3R	22450548	22450573	chr3R	22453188	22453210	NOF	8	2639	1.5	3.0	2.2	2.5	2662	chr3R	22450548	intron	CG34376 +	chr3R	22451879	intron	CG34376 +	chr3R	22453210	intron	CG34376 +	chr3R_8_22450001	chr3R_22450001	RAL-799
1331	chr3R	23558403	23558420	chr3R	23560184	23560201	Bari1	4	1781	3.5	2.5	3.0	1.0	1798	chr3R	23558403	intron	beat-IV +	chr3R	23559302	intron	beat-IV +	chr3R	23560201	intron	beat-IV +	chr3R_4_23555001	chr3R_23555001	RAL-799
1335	chr3R	23684699	23684729	chr3R	23685184	23685212	roo	14	483	3.5	6.0	4.8	2.4	513	chr3R	23684699	exon	CG18754 +	chr3R	23684956	intron	CG18754 +	chr3R	23685212	exon	CG18754 +	chr3R_14_23680001	chr3R_23680001	RAL-799
1339	chr3R	23835410	23835427	chr3R	23844560	23844573	roo	5	9149	3.5	1.0	2.2	1.6	9163	chr3R	23835410	intron	CG34355 +	chr3R	23839992	intron	CG34355 +	chr3R	23844573	intron	CG34355 +	chr3R_5_23835001	chr3R_23835001	RAL-799
1344	chr3R	24072087	24072114	chr3R	24072522	24072544	jockey	15	437	5.5	2.5	4.0	3.0	457	chr3R	24072087	intron	4EHP -	chr3R	24072316	intron	4EHP -	chr3R	24072544	intron	4EHP -	chr3R_15_24070001	chr3R_24070001	RAL-799
1345	chr3R	24076937	24076947	chr3R	24078404	24078414	hobo	6	1466	3.0	7.0	5.0	1.0	1477	chr3R	24076937	intron	4EHP -	chr3R	24077676	intron	4EHP -	chr3R	24078414	intron	4EHP -	chr3R_6_24075001	chr3R_24075001	RAL-799
1346	chr3R	24207220	24207235	chr3R	24212296	24212310	flea	7	5075	3.0	7.5	5.2	1.1	5090	chr3R	24207220	intron	twin -	chr3R	24209765	intron	twin -	chr3R	24212310	intron	twin -	chr3R_7_24205001	chr3R_24205001	RAL-799
1350	chr3R	24493275	24493305	chr3R	24493504	24493533	BS	6	229	3.0	3.0	3.0	1.5	258	chr3R	24493275	intergenic	not near genes	chr3R	24493404	intergenic	not near genes	chr3R	24493533	intergenic	not near genes	chr3R_6_24490001	chr3R_24490001	RAL-799
1353	chr3R	24730098	24730118	chr3R	24732476	24732496	Doc	6	2378	2.5	1.0	1.8	2.1	2398	chr3R	24730098	intron	tok +	chr3R	24731297	intron	tok +	chr3R	24732496	intron	tok +	chr3R_6_24730001	chr3R_24730001	RAL-799
1367	chr3R	25725831	25725861	chr3R	25734991	25735021	roo	4	9160	1.5	1.0	1.2	1.8	9190	chr3R	25725831	intron	LpR2 -	chr3R	25730426	intron	LpR2 -	chr3R	25735021	intron	LpR2 -	chr3R_4_25730001	chr3R_25730001	RAL-799
1369	chr3R	25832693	25832723	chr3R	25841875	25841905	roo	5	9182	1.5	3.0	2.2	1.6	9212	chr3R	25832693	exon	alpha4GT2 +	chr3R	25837299	intron	alpha4GT2 +	chr3R	25841905	exon	alpha4GT2 +	chr3R_5_25835001	chr3R_25835001	RAL-799
1379	chr3R	26376325	26376354	chr3R	26385484	26385514	roo	13	9160	2.0	0.5	1.2	5.9	9189	chr3R	26376325	intergenic	not near genes	chr3R	26380920	intergenic	not near genes	chr3R	26385514	intergenic	not near genes	chr3R_13_26380001	chr3R_26380001	RAL-799
1383	chr3R	26558349	26558361	chr3R	26565661	26565671	Stalker4	4	7311	2.5	5.5	4.0	0.8	7322	chr3R	26558349	intron	scrib +	chr3R	26562010	intron	scrib +	chr3R	26565671	intron	scrib +	chr3R_4_26560001	chr3R_26560001	RAL-799
1387	chr3R	26810554	26810580	chr3R	26811038	26811065	roo	8	485	2.0	4.0	3.0	2.0	511	chr3R	26810554	intron	Tl +	chr3R	26810810	intron	Tl +	chr3R	26811065	intron	Tl +	chr3R_8_26810001	chr3R_26810001	RAL-799
1388	chr3R	27007413	27007428	chr3R	27016546	27016563	roo	4	9134	2.5	1.0	1.8	1.4	9150	chr3R	27007413	intron	RYa-R +	chr3R	27011988	intron	RYa-R +	chr3R	27016563	intron	RYa-R +	chr3R_4_27010001	chr3R_27010001	RAL-799
1389	chr3R	27140513	27140541	chr3R	27148123	27148131	412	5	7604	4.5	1.0	2.8	1.3	7618	chr3R	27140513	intron	CG6051 -	chr3R	27144322	intron	CG6051 -	chr3R	27148131	intron	CG6051 -	chr3R_5_27140001	chr3R_27140001	RAL-799
1393	chr3R	27342798	27342824	chr3R	27351379	27351405	Tirant	7	8581	0.5	1.0	0.8	3.9	8607	chr3R	27342798	intron	CG42534 +	chr3R	27347102	intron	CG42534 +	chr3R	27351405	intron	CG42534 +	chr3R_7_27345001	chr3R_27345001	RAL-799
1398	chr3R	27521159	27521181	chr3R	27530368	27530390	roo	4	9209	1.5	0.5	1.0	2.0	9231	chr3R	27521159	intron	CG12885 +	chr3R	27525774	intron	CG12885 +	chr3R	27530390	intron	CG12885 +	chr3R_4_27525001	chr3R_27525001	RAL-799
1404	chr3R	27862957	27862987	chr3R	27868261	27868292	Transpac	8	5305	1.0	2.5	1.8	2.9	5335	chr3R	27862957	intron	CG34353 -	chr3R	27865624	intron	CG34353 -	chr3R	27868292	intron	CG34353 -	chr3R_8_27865001	chr3R_27865001	RAL-799
1405	chr3R	27875706	27875733	chr3R	27882761	27882788	297	10	7055	2.0	4.5	3.2	2.4	7082	chr3R	27875706	intron	CG34353 -	chr3R	27879247	intron	CG34353 -	chr3R	27882788	intron	CG34353 -	chr3R_10_27875001	chr3R_27875001	RAL-799
1407	chr3R	28068492	28068519	chr3R	28073934	28073961	I-element	6	5440	2.5	2.0	2.2	1.9	5469	chr3R	28068492	intron	CG34362 +	chr3R	28071226	intron	CG34362 +	chr3R	28073961	intron	CG34362 +	chr3R_6_28070001	chr3R_28070001	RAL-799
1409	chr3R	28173672	28173703	chr3R	28181102	28181133	mdg1	4	7430	1.5	1.5	1.5	1.6	7461	chr3R	28173672	intron	CG34354 +	chr3R	28177402	intron	CG34354 +	chr3R	28181133	intron	CG34354 +	chr3R_4_28175001	chr3R_28175001	RAL-799
1412	chr3R	28253340	28253359	chr3R	28255850	28255869	jockey	9	2509	1.0	3.0	2.0	3.0	2529	chr3R	28253340	intergenic	not near genes	chr3R	28254604	intergenic	not near genes	chr3R	28255869	intergenic	not near genes	chr3R_9_28250001	chr3R_28250001	RAL-799
1413	chr3R	28302107	28302132	chr3R	28302546	28302570	jockey	5	439	1.5	3.0	2.2	1.6	463	chr3R	28302107	intergenic	not near genes	chr3R	28302338	intergenic	not near genes	chr3R	28302570	intergenic	not near genes	chr3R_5_28300001	chr3R_28300001	RAL-799
1424	chr3R	28792871	28792902	chr3R	28797966	28797997	jockey	9	5094	0.0	2.5	1.2	4.1	5126	chr3R	28792871	intergenic	not near genes	chr3R	28795434	intergenic	not near genes	chr3R	28797997	intergenic	not near genes	chr3R_9_28795001	chr3R_28795001	RAL-799
1430	chr3R	29079377	29079412	chr3R	29080749	29080784	NOF	6	1372	1.0	1.5	1.2	2.7	1407	chr3R	29079377	intron	CG11873 +	chr3R	29080080	intron	CG11873 +	chr3R	29080784	intron	CG11873 +	chr3R_6_29080001	chr3R_29080001	RAL-799
1434	chr3R	29319846	29319859	chr3R	29320165	29320178	jockey	4	319	1.0	7.0	4.0	0.8	332	chr3R	29319846	intergenic	Cnx99A -	chr3R	29320012	intergenic	Cnx99A -	chr3R	29320178	intergenic	not near genes	chr3R_4_29320001	chr3R_29320001	RAL-799
1443	chr3R	29738267	29738296	chr3R	29739734	29739763	hobo	7	1467	2.5	2.0	2.2	2.2	1496	chr3R	29738267	intergenic	CG1969 +,CG7598 +	chr3R	29739015	intron	CG1969 +	chr3R	29739763	5` UTR	CG1969 +	chr3R_7_29735001	chr3R_29735001	RAL-799
1444	chr3R	29760360	29760393	chr3R	29761561	29761594	pogo	4	1200	1.0	0.5	0.8	2.2	1234	chr3R	29760360	intergenic	not near genes	chr3R	29760977	intergenic	not near genes	chr3R	29761594	intergenic	not near genes	chr3R_4_29760001	chr3R_29760001	RAL-799
1446	chr3R	29882017	29882048	chr3R	29891174	29891205	roo	14	9157	2.0	5.5	3.8	2.9	9188	chr3R	29882017	intron	CG31038 +	chr3R	29886611	intron	CG31038 +	chr3R	29891205	intron	CG31038 +	chr3R_14_29885001	chr3R_29885001	RAL-799
1448	chr3R	30084850	30084879	chr3R	30086317	30086346	hobo	15	1466	2.5	2.5	2.5	4.3	1496	chr3R	30084850	intron	sima +	chr3R	30085598	intron	sima +	chr3R	30086346	intron	sima +	chr3R_15_30085001	chr3R_30085001	RAL-799
1452	chr3R	30396216	30396240	chr3R	30404482	30404506	roo	6	8266	2.0	3.5	2.8	1.6	8290	chr3R	30396216	intergenic	not near genes	chr3R	30400361	intergenic	not near genes	chr3R	30404506	5` UTR	CR45570 +	chr3R_6_30400001	chr3R_30400001	RAL-799
1455	chr3R	30480482	30480511	chr3R	30482950	30482979	jockey	8	2468	1.5	7.5	4.5	1.5	2497	chr3R	30480482	intron	PH4alphaEFB +	chr3R	30481730	intron	PH4alphaEFB +	chr3R	30482979	intron	PH4alphaEFB +	chr3R_8_30480001	chr3R_30480001	RAL-799
1461	chr3R	30679520	30679552	chr3R	30686989	30687021	blood	11	7469	4.0	2.0	3.0	2.8	7501	chr3R	30679520	intergenic	not near genes	chr3R	30683270	intergenic	not near genes	chr3R	30687021	intergenic	not near genes	chr3R_11_30680001	chr3R_30680001	RAL-799
1471	chr3R	31279381	31279409	chr3R	31285570	31285600	diver	6	6190	5.0	5.0	5.0	1.0	6219	chr3R	31279381	intergenic	not near genes	chr3R	31282490	intergenic	not near genes	chr3R	31285600	intergenic	not near genes	chr3R_6_31280001	chr3R_31280001	RAL-799
1473	chr3R	31413089	31413116	chr3R	31418289	31418290	copia	5	5195	3.5	0.0	1.8	1.8	5201	chr3R	31413089	intron	Gprk2 +	chr3R	31415690	intron	Gprk2 +	chr3R	31418290	intron	Gprk2 +	chr3R_5_31415001	chr3R_31415001	RAL-799
1478	chr3R	31691533	31691550	chr3R	31696298	31696316	Doc	6	4765	5.0	3.5	4.2	1.2	4783	chr3R	31691533	intergenic	not near genes	chr3R	31693924	intergenic	not near genes	chr3R	31696316	intergenic	not near genes	chr3R_6_31690001	chr3R_31690001	RAL-799
1482	chr4	76492	76513	chr4	81935	81956	I-element	5	5442	3.0	1.5	2.2	1.6	5464	chr4	76492	intron	pan +	chr4	79224	intron	pan +	chr4	81956	intron	pan +	chr4_5_75001	chr4_75001	RAL-799
1486	chr4	671608	671631	chr4	680191	680214	Tirant	8	8583	5.0	6.5	5.8	1.2	8606	chr4	671608	intron	CG11360 +	chr4	675911	intron	CG11360 +	chr4	680214	intron	CG11360 +	chr4_8_675001	chr4_675001	RAL-799
1489	chrX	295871	295881	chrX	303490	303501	412	5	7618	1.0	4.5	2.8	1.3	7630	chrX	295871	intron	CG3777 +	chrX	299686	intron	CG3777 +	chrX	303501	intron	CG3777 +	chrX_5_295001	chrX_295001	RAL-799
1490	chrX	318471	318500	chrX	323557	323586	flea	9	5086	1.5	2.5	2.0	3.0	5115	chrX	318471	intron,intron	CG3777 +,CG32816 -	chrX	321028	intron,intron	CG3777 +,CG32816 -	chrX	323586	intron,intron	CG3777 +,CG32816 -	chrX_9_320001	chrX_320001	RAL-799
1492	chrX	428418	428452	chrX	434603	434637	3S18	8	6185	2.0	1.5	1.8	2.9	6219	chrX	428418	intron	CG32816 -	chrX	431528	intron	CG32816 -	chrX	434637	intron	CG32816 -	chrX_8_430001	chrX_430001	RAL-799
1497	chrX	551421	551451	chrX	558982	559013	412	7	7561	4.0	1.5	2.8	1.8	7592	chrX	551421	intron	Appl +	chrX	555217	intron	Appl +	chrX	559013	intron	Appl +	chrX_7_555001	chrX_555001	RAL-799
1508	chrX	906709	906729	chrX	908498	908518	S-element	7	1789	4.0	4.0	4.0	1.4	1809	chrX	906709	intron	CG43867 -	chrX	907614	intron	CG43867 -	chrX	908518	intron	CG43867 -	chrX_7_905001	chrX_905001	RAL-799
1512	chrX	1357783	1357794	chrX	1367953	1367964	Doc	4	10170	4.0	4.0	4.0	0.8	10181	chrX	1357783	intergenic	png -	chrX	1362874	intergenic	not near genes	chrX	1367964	intergenic	not near genes	chrX_4_1360001	chrX_1360001	RAL-799
1513	chrX	1518052	1518070	chrX	1523454	1523471	jockey	4	5400	2.0	6.0	4.0	0.8	5419	chrX	1518052	intergenic	inc +	chrX	1520762	intergenic	not near genes	chrX	1523471	intergenic	not near genes	chrX_4_1520001	chrX_1520001	RAL-799
1515	chrX	1954898	1954912	chrX	1962824	1962852	Stalker2	5	7937	3.0	4.0	3.5	1.1	7954	chrX	1954898	intron	Hr4 +	chrX	1958875	intron	Hr4 +	chrX	1962852	intron	Hr4 +	chrX_5_1955001	chrX_1955001	RAL-799
1519	chrX	2399836	2399858	chrX	2408188	2408188	roo	6	8348	5.5	0.5	3.0	1.5	8352	chrX	2399836	intergenic	not near genes	chrX	2404012	intergenic	not near genes	chrX	2408188	intergenic	not near genes	chrX_6_2400001	chrX_2400001	RAL-799
1523	chrX	2664386	2664419	chrX	2665532	2665565	1360	6	1146	2.5	1.5	2.0	2.0	1179	chrX	2664386	intron	sgg +	chrX	2664976	intron	sgg +	chrX	2665565	intron	sgg +	chrX_6_2660001	chrX_2660001	RAL-799
1525	chrX	2844912	2844929	chrX	2852322	2852339	mdg1	5	7410	1.5	2.0	1.8	1.8	7427	chrX	2844912	intron	kirre +	chrX	2848626	intron	kirre +	chrX	2852339	intron	kirre +	chrX_5_2845001	chrX_2845001	RAL-799
1528	chrX	3058029	3058051	chrX	3058270	3058292	pogo	4	241	0.5	1.5	1.0	2.0	263	chrX	3058029	intron	kirre +	chrX	3058160	intron	kirre +	chrX	3058292	intron	kirre +	chrX_4_3055001	chrX_3055001	RAL-799
1529	chrX	3075633	3075658	chrX	3080939	3080964	Transpac	4	5306	2.5	3.0	2.8	1.1	5331	chrX	3075633	intron	kirre +	chrX	3078298	intron	kirre +	chrX	3080964	intron	kirre +	chrX_4_3075001	chrX_3075001	RAL-799
1530	chrX	3415034	3415049	chrX	3421219	3421232	3S18	4	6184	1.0	2.5	1.8	1.4	6198	chrX	3415034	intron,intron	CR44999 +,CG12535 -	chrX	3418133	intron,intron	CR44999 +,CG12535 -	chrX	3421232	intron,intron	CR44999 +,CG12535 -	chrX_4_3415001	chrX_3415001	RAL-799
1532	chrX	3597548	3597576	chrX	3619716	3619744	roo	11	22168	2.5	3.5	3.0	2.8	22196	chrX	3597548	intron	AstA-R1 +	chrX	3608646	intron	AstA-R1 +	chrX	3619744	intron	AstA-R1 +	chrX_11_3605001	chrX_3605001	RAL-799
1539	chrX	3986863	3986895	chrX	3994496	3994528	412	11	7633	2.5	3.5	3.0	2.8	7665	chrX	3986863	intergenic	not near genes	chrX	3990696	intergenic	not near genes	chrX	3994528	intergenic	not near genes	chrX_11_3990001	chrX_3990001	RAL-799
1540	chrX	4157895	4157920	chrX	4164930	4164955	297	4	7035	1.0	2.0	1.5	1.6	7060	chrX	4157895	intron	Fas2 -	chrX	4161425	intron	Fas2 -	chrX	4164955	intron	Fas2 -	chrX_4_4160001	chrX_4160001	RAL-799
1546	chrX	4700390	4700425	chrX	4700733	4700768	jockey	8	343	1.0	2.0	1.5	3.2	378	chrX	4700390	3` UTR	ctp +	chrX	4700579	3` UTR	ctp +	chrX	4700768	3` UTR	ctp +	chrX_8_4700001	chrX_4700001	RAL-799
1548	chrX	4763251	4763273	chrX	4763739	4763759	Stalker4	5	487	2.5	0.5	1.5	2.0	508	chrX	4763251	intergenic	not near genes	chrX	4763505	intergenic	not near genes	chrX	4763759	intergenic	not near genes	chrX_5_4760001	chrX_4760001	RAL-799
1549	chrX	4792378	4792403	chrX	4792811	4792834	jockey	5	432	1.0	3.0	2.0	1.7	456	chrX	4792378	intergenic	not near genes	chrX	4792606	intergenic	not near genes	chrX	4792834	intergenic	not near genes	chrX_5_4790001	chrX_4790001	RAL-799
1551	chrX	4827970	4828000	chrX	4835341	4835371	Stalker4	9	7370	2.5	4.0	3.2	2.1	7401	chrX	4827970	intergenic	not near genes	chrX	4831670	intergenic	not near genes	chrX	4835371	intergenic	not near genes	chrX_9_4830001	chrX_4830001	RAL-799
1554	chrX	4990045	4990068	chrX	4997259	4997282	roo	6	7214	2.5	1.0	1.8	2.1	7237	chrX	4990045	intron	CR44833 -	chrX	4993664	intron	CR44833 -	chrX	4997282	intron	CR44833 -	chrX_6_4990001	chrX_4990001	RAL-799
1555	chrX	5096273	5096301	chrX	5103838	5103866	springer	6	7564	2.5	3.5	3.0	1.5	7593	chrX	5096273	intron,intron	CG15465 +,rg +	chrX	5100070	intron,intron	CG15465 +,rg +	chrX	5103866	intron,intron	CG15465 +,rg +	chrX_6_5100001	chrX_5100001	RAL-799
1557	chrX	5338707	5338733	chrX	5339960	5339983	jockey	8	1252	1.0	1.0	1.0	4.0	1276	chrX	5338707	intergenic	not near genes	chrX	5339345	intergenic	not near genes	chrX	5339983	intergenic	SK +	chrX_8_5335001	chrX_5335001	RAL-799
1560	chrX	5883813	5883830	chrX	5884054	5884071	pogo	6	241	0.5	3.0	1.8	2.1	258	chrX	5883813	intron	CR45668 -	chrX	5883942	intron	CR45668 -	chrX	5884071	intron	CR45668 -	chrX_6_5880001	chrX_5880001	RAL-799
1561	chrX	6171584	6171617	chrX	6179016	6179050	Quasimodo	5	7433	3.0	2.5	2.8	1.3	7466	chrX	6171584	intron	Ca-alpha1T -	chrX	6175317	intron	Ca-alpha1T -	chrX	6179050	intron	Ca-alpha1T -	chrX_5_6175001	chrX_6175001	RAL-799
1563	chrX	6335212	6335244	chrX	6337722	6337753	Tirant	8	2509	0.5	2.0	1.2	3.6	2541	chrX	6335212	intergenic	not near genes	chrX	6336482	intergenic	not near genes	chrX	6337753	intergenic	CG3842 +	chrX_8_6335001	chrX_6335001	RAL-799
1565	chrX	6392869	6392901	chrX	6397634	6397666	Doc	4	4765	3.0	3.0	3.0	1.0	4797	chrX	6392869	intergenic	not near genes	chrX	6395268	intergenic	not near genes	chrX	6397666	intergenic	not near genes	chrX_4_6395001	chrX_6395001	RAL-799
1567	chrX	6562816	6562846	chrX	6571298	6571328	Tirant	16	8481	5.5	1.5	3.5	3.6	8512	chrX	6562816	intron	CG34417 +	chrX	6567072	intron	CG34417 +	chrX	6571328	intron	CG34417 +	chrX_16_6565001	chrX_6565001	RAL-799
1571	chrX	7125252	7125277	chrX	7134410	7134436	roo	5	9159	1.5	2.0	1.8	1.8	9184	chrX	7125252	intergenic	not near genes	chrX	7129844	intergenic	not near genes	chrX	7134436	intergenic	not near genes	chrX_5_7125001	chrX_7125001	RAL-799
1573	chrX	7702906	7702932	chrX	7703343	7703371	jockey	9	438	2.0	3.0	2.5	2.6	465	chrX	7702906	intron	CHES-1-like -	chrX	7703138	intron	CHES-1-like -	chrX	7703371	intron	CHES-1-like -	chrX_9_7700001	chrX_7700001	RAL-799
1575	chrX	7845725	7845757	chrX	7847215	7847248	hopper2	8	1491	6.0	3.0	4.5	1.5	1523	chrX	7845725	intergenic	not near genes	chrX	7846486	intergenic	not near genes	chrX	7847248	intergenic	not near genes	chrX_8_7845001	chrX_7845001	RAL-799
1580	chrX	8364849	8364870	chrX	8365246	8365266	BS	9	397	2.0	2.0	2.0	3.0	417	chrX	8364849	intron	nAChRalpha3 -	chrX	8365058	intron	nAChRalpha3 -	chrX	8365266	intron	nAChRalpha3 -	chrX_9_8365001	chrX_8365001	RAL-799
1583	chrX	8922325	8922363	chrX	8922759	8922797	jockey	13	434	5.5	3.5	4.5	2.4	472	chrX	8922325	intron	rdgA +	chrX	8922561	intron	rdgA +	chrX	8922797	intron	rdgA +	chrX_13_8920001	chrX_8920001	RAL-799
1584	chrX	8948757	8948791	chrX	8956267	8956297	roo	4	7509	1.0	0.5	0.8	2.2	7540	chrX	8948757	intron	rdgA +	chrX	8952527	intron	rdgA +	chrX	8956297	intron	rdgA +	chrX_4_8950001	chrX_8950001	RAL-799
1588	chrX	9575791	9575812	chrX	9576113	9576135	mdg3	12	323	5.0	8.0	6.5	1.6	344	chrX	9575791	intron,exon	CG32699 -,CG42395 -	chrX	9575963	intron,intron	CG32699 -,CG42395 -	chrX	9576135	intron,5` UTR	CG32699 -,CG42395 -	chrX_12_9575001	chrX_9575001	RAL-799
1596	chrX	10550855	10550884	chrX	10552321	10552351	hobo	6	1464	4.0	1.5	2.8	1.6	1496	chrX	10550855	intron	spri -	chrX	10551603	intron	spri -	chrX	10552351	intron	spri -	chrX_6_10550001	chrX_10550001	RAL-799
1601	chrX	11095996	11096024	chrX	11103098	11103126	HMS-Beagle	5	7102	0.0	3.5	1.8	1.8	7130	chrX	11095996	intergenic	not near genes	chrX	11099561	intergenic	not near genes	chrX	11103126	intron	CG42249 +	chrX_5_11095001	chrX_11095001	RAL-799
1607	chrX	11633421	11633450	chrX	11640475	11640504	297	5	7054	1.5	1.5	1.5	2.0	7083	chrX	11633421	intron	Ptp10D +	chrX	11636962	intron	Ptp10D +	chrX	11640504	intron	Ptp10D +	chrX_5_11635001	chrX_11635001	RAL-799
1610	chrX	12168139	12168147	chrX	12173581	12173589	I-element	5	5442	3.5	1.5	2.5	1.4	5450	chrX	12168139	intron	Ten-a +	chrX	12170864	intron	Ten-a +	chrX	12173589	intron	Ten-a +	chrX_5_12170001	chrX_12170001	RAL-799
1612	chrX	12301963	12301989	chrX	12303269	12303294	X-element	5	1306	0.5	2.5	1.5	2.0	1331	chrX	12301963	intron	Ten-a +	chrX	12302628	intron	Ten-a +	chrX	12303294	intron	Ten-a +	chrX_5_12300001	chrX_12300001	RAL-799
1617	chrX	13429471	13429487	chrX	13430620	13430629	jockey	4	1147	0.0	3.0	1.5	1.6	1158	chrX	13429471	intergenic	not near genes	chrX	13430050	intergenic	not near genes	chrX	13430629	intergenic	not near genes	chrX_4_13430001	chrX_13430001	RAL-799
1623	chrX	13937977	13938008	chrX	13941248	13941279	I-element	8	3271	1.0	2.0	1.5	3.2	3302	chrX	13937977	intron	mamo -	chrX	13939628	intron	mamo -	chrX	13941279	intron	mamo -	chrX_8_13935001	chrX_13935001	RAL-799
1626	chrX	14105021	14105056	chrX	14114172	14114203	roo	8	9148	1.0	0.5	0.8	4.4	9182	chrX	14105021	intergenic	not near genes	chrX	14109612	intergenic	not near genes	chrX	14114203	5` UTR	CR44657 +	chrX_8_14105001	chrX_14105001	RAL-799
1629	chrX	14636462	14636493	chrX	14641903	14641933	I-element	8	5437	2.0	0.5	1.2	3.6	5471	chrX	14636462	intron	NetA -	chrX	14639198	intron	NetA -	chrX	14641933	intron	NetA -	chrX_8_14635001	chrX_14635001	RAL-799
1631	chrX	14818763	14818798	chrX	14823967	14824002	copia	9	5201	2.0	1.0	1.5	3.6	5239	chrX	14818763	intron	rut -	chrX	14821382	intron	rut -	chrX	14824002	intron	rut -	chrX_9_14820001	chrX_14820001	RAL-799
1633	chrX	15413054	15413061	chrX	15417356	15417363	Juan	7	4302	4.5	1.0	2.8	1.8	4309	chrX	15413054	intron	Cngl -	chrX	15415208	intron	Cngl -	chrX	15417363	intron	Cngl -	chrX_7_15415001	chrX_15415001	RAL-799
1634	chrX	15413065	15413073	chrX	15417349	15417375	Juan	5	4296	2.0	1.0	1.5	2.0	4310	chrX	15413065	intron	Cngl -	chrX	15415220	intron	Cngl -	chrX	15417375	intron	Cngl -	chrX_5_15415001	chrX_15415001	RAL-799
1635	chrX	15435688	15435705	chrX	15436121	15436138	rover	6	433	0.0	5.0	2.5	1.7	450	chrX	15435688	intron	Cngl -	chrX	15435913	intron	Cngl -	chrX	15436138	intron	Cngl -	chrX_6_15435001	chrX_15435001	RAL-799
1643	chrX	16492645	16492679	chrX	16498222	16498256	mdg3	9	5577	1.0	2.0	1.5	3.6	5611	chrX	16492645	intron	para -	chrX	16495450	intron	para -	chrX	16498256	intron	para -	chrX_9_16495001	chrX_16495001	RAL-799
1645	chrX	16936019	16936041	chrX	16936437	16936444	jockey	6	415	0.0	4.5	2.2	1.9	425	chrX	16936019	intron	CG4928 +	chrX	16936232	intron	CG4928 +	chrX	16936444	intron	CG4928 +	chrX_6_16935001	chrX_16935001	RAL-799
1647	chrX	17195214	17195236	chrX	17200300	17200317	flea	5	5085	2.0	1.0	1.5	2.0	5103	chrX	17195214	3` UTR	baz +	chrX	17197766	3` UTR	baz +	chrX	17200317	3` UTR	baz +	chrX_5_17195001	chrX_17195001	RAL-799
1653	chrX	17792966	17792984	chrX	17796264	17796282	flea	5	3298	1.5	5.5	3.5	1.1	3316	chrX	17792966	intron	OdsH +	chrX	17794624	intron	OdsH +	chrX	17796282	intron	OdsH +	chrX_5_17790001	chrX_17790001	RAL-799
1658	chrX	18194066	18194104	chrX	18194601	18194639	BS	8	535	2.0	2.0	2.0	2.7	573	chrX	18194066	intron	Frq2 +	chrX	18194352	intron	Frq2 +	chrX	18194639	intron	Frq2 +	chrX_8_18190001	chrX_18190001	RAL-799
1660	chrX	18429496	18429521	chrX	18434807	18434832	Transpac	4	5311	1.5	3.0	2.2	1.2	5336	chrX	18429496	intergenic	not near genes	chrX	18432164	intergenic	not near genes	chrX	18434832	intergenic	not near genes	chrX_4_18430001	chrX_18430001	RAL-799
1665	chrX	19060407	19060429	chrX	19065191	19065213	Doc	4	4784	1.5	3.5	2.5	1.1	4806	chrX	19060407	intron	CG14190 +	chrX	19062810	intron	CG14190 +	chrX	19065213	intron	CG14190 +	chrX_4_19060001	chrX_19060001	RAL-799
1678	chrX	19380160	19380184	chrX	19380399	19380423	pogo	5	240	4.0	1.5	2.8	1.3	263	chrX	19380160	intron	kek5 +	chrX	19380292	intron	kek5 +	chrX	19380423	intron	kek5 +	chrX_5_19380001	chrX_19380001	RAL-799
1679	chrX	19472120	19472152	chrX	19472690	19472716	jockey	8	568	3.0	3.0	3.0	2.0	596	chrX	19472120	intergenic	kek5 +	chrX	19472418	intergenic	not near genes	chrX	19472716	intergenic	not near genes	chrX_8_19470001	chrX_19470001	RAL-799
1682	chrX	19710081	19710095	chrX	19711867	19711881	S-element	8	1784	2.0	4.0	3.0	2.0	1800	chrX	19710081	intron	meso18E -	chrX	19710981	intron	meso18E -	chrX	19711881	intron	meso18E -	chrX_8_19710001	chrX_19710001	RAL-799
1694	chrX	20377325	20377349	chrX	20378792	20378816	hobo	12	1466	3.0	4.0	3.5	2.7	1491	chrX	20377325	intergenic	not near genes	chrX	20378070	intergenic	not near genes	chrX	20378816	intergenic	not near genes	chrX_12_20375001	chrX_20375001	RAL-799
1696	chrX	20504125	20504158	chrX	20505646	20505679	transib2	6	1521	0.5	3.0	1.8	2.1	1554	chrX	20504125	intron	RhoGAP19D -	chrX	20504902	intron	RhoGAP19D -	chrX	20505679	intron	RhoGAP19D -	chrX_6_20500001	chrX_20500001	RAL-799
1699	chrX	20836728	20836756	chrX	20844329	20844329	roo	6	7595	1.5	3.5	2.5	1.7	7601	chrX	20836728	intron	shakB -	chrX	20840528	intron	shakB -	chrX	20844329	intron	shakB -	chrX_6_20840001	chrX_20840001	RAL-799
1701	chrX	20940721	20940756	chrX	20942190	20942225	hobo	11	1469	1.5	4.5	3.0	2.8	1504	chrX	20940721	intergenic	not near genes	chrX	20941473	intergenic	not near genes	chrX	20942225	intergenic	not near genes	chrX_11_20940001	chrX_20940001	RAL-799
1710	chrX	21458692	21458719	chrX	21464127	21464155	Ivk	9	5436	2.5	3.0	2.8	2.4	5463	chrX	21458692	intergenic	not near genes	chrX	21461424	intergenic	not near genes	chrX	21464155	intergenic	not near genes	chrX_9_21460001	chrX_21460001	RAL-799
1715	chrX	22697498	22697522	chrX	22701795	22701819	Juan	7	4297	4.5	3.5	4.0	1.4	4321	chrX	22697498	intron	CR44997 +	chrX	22699658	intron	CR44997 +	chrX	22701819	intron	CR44997 +	chrX_7_22695001	chrX_22695001	RAL-799
1716	chrX	22771504	22771539	chrX	22774795	22774827	297	9	3290	0.5	2.5	1.5	3.6	3323	chrX	22771504	intron	CR44997 +	chrX	22773166	intron	CR44997 +	chrX	22774827	intron	CR44997 +	chrX_9_22770001	chrX_22770001	RAL-799
1721	chrX	22967392	22967511	chrX	23154543	23154688	diver	4	187164	4.5	5.5	5.0	0.7	187296	chrX	22967392	intergenic	not near genes	chrX	23061040	intergenic	not near genes	chrX	23154688	intergenic	not near genes	chrX_4_23060001	chrX_23060001	RAL-799
1722	chrX	22996306	22996332	chrX	23003540	23003565	roo	7	7234	4.5	2.5	3.5	1.6	7259	chrX	22996306	intron,intron	stnA -,stnB -	chrX	22999936	intron,intron	stnA -,stnB -	chrX	23003565	intron,intron	stnA -,stnB -	chrX_7_22995001	chrX_22995001	RAL-799