SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47458 47480 chr2L 52563 52584 jockey 10 5104 4.0 3.5 3.8 2.1 5126 chr2L 47458 intron Cda5 - chr2L 50021 intron Cda5 - chr2L 52584 intron Cda5 - chr2L_10_50001 chr2L_50001 RAL-799 2 chr2L 73788 73812 chr2L 73896 73921 10 109 3.5 2.5 3.0 2.5 133 chr2L 73788 3` UTR,intron CR44987 -,galectin + chr2L 73854 intron galectin + chr2L 73921 intron galectin + chr2L_10_70001 chr2L_70001 RAL-799 3 chr2L 262743 262759 chr2L 262820 262836 4 77 1.5 6.0 3.8 0.8 93 chr2L 262743 intron,3` UTR,5` UTR CG3645 -,CG17075 -,CR44219 + chr2L 262790 intron,3` UTR,5` UTR CG3645 -,CG17075 -,CR44219 + chr2L 262836 intron,3` UTR,5` UTR CG3645 -,CG17075 -,CR44219 + chr2L_4_260001 chr2L_260001 RAL-799 4 chr2L 263300 263319 chr2L 263446 263461 6 145 0.5 2.5 1.5 2.4 161 chr2L 263300 intron,3` UTR CG3645 -,CG17075 - chr2L 263380 intron,3` UTR CG3645 -,CG17075 - chr2L 263461 intron,3` UTR CG3645 -,CG17075 - chr2L_6_260001 chr2L_260001 RAL-799 5 chr2L 297692 297706 chr2L 297792 297806 6 98 1.5 2.5 2.0 2.0 114 chr2L 297692 intergenic Pi3K21B +,Hop + chr2L 297749 intergenic Pi3K21B +,Hop + chr2L 297806 intergenic Pi3K21B +,Hop + chr2L_6_295001 chr2L_295001 RAL-799 6 chr2L 314131 314150 chr2L 314202 314227 5 76 2.5 1.0 1.8 1.8 96 chr2L 314131 intron Plc21C + chr2L 314179 intron Plc21C + chr2L 314227 intron Plc21C + chr2L_5_310001 chr2L_310001 RAL-799 7 chr2L 323462 323486 chr2L 323540 323564 9 77 1.5 4.0 2.8 2.4 102 chr2L 323462 intron Plc21C + chr2L 323513 intron Plc21C + chr2L 323564 intron Plc21C + chr2L_9_320001 chr2L_320001 RAL-799 8 chr2L 347885 347909 chr2L 355385 355409 blood 6 7500 3.0 2.0 2.5 1.7 7524 chr2L 347885 3` UTR Plc21C + chr2L 351647 intron Plc21C + chr2L 355409 3` UTR Plc21C + chr2L_6_350001 chr2L_350001 RAL-799 9 chr2L 392496 392527 chr2L 392604 392637 7 110 2.0 2.0 2.0 2.3 141 chr2L 392496 intergenic not near genes chr2L 392566 intergenic not near genes chr2L 392637 intergenic not near genes chr2L_7_390001 chr2L_390001 RAL-799 10 chr2L 407949 407972 chr2L 408030 408053 5 81 2.0 1.0 1.5 2.0 104 chr2L 407949 3` UTR RpI135 + chr2L 408001 intergenic AP-2alpha -,RpI135 + chr2L 408053 3` UTR AP-2alpha - chr2L_5_405001 chr2L_405001 RAL-799 11 chr2L 666279 666309 chr2L 666355 666385 7 74 0.5 1.0 0.8 3.9 106 chr2L 666279 intron ds - chr2L 666332 intron ds - chr2L 666385 intron ds - chr2L_7_665001 chr2L_665001 RAL-799 12 chr2L 686916 686936 chr2L 695956 695976 roo 6 9040 4.0 3.5 3.8 1.2 9060 chr2L 686916 intron ds - chr2L 691446 intron ds - chr2L 695976 intron ds - chr2L_6_690001 chr2L_690001 RAL-799 13 chr2L 736879 736902 chr2L 736984 737007 7 105 0.5 1.0 0.8 3.9 128 chr2L 736879 intergenic Eaat2 - chr2L 736943 intergenic Eaat2 - chr2L 737007 intergenic Eaat2 - chr2L_7_735001 chr2L_735001 RAL-799 14 chr2L 764555 764574 chr2L 764655 764674 4 100 3.0 4.5 3.8 0.8 119 chr2L 764555 intergenic not near genes chr2L 764614 intergenic not near genes chr2L 764674 intergenic not near genes chr2L_4_760001 chr2L_760001 RAL-799 15 chr2L 770463 770492 chr2L 772244 772271 Bari1 8 1780 2.0 4.5 3.2 1.9 1808 chr2L 770463 intergenic not near genes chr2L 771367 intergenic not near genes chr2L 772271 intergenic CR44614 + chr2L_8_770001 chr2L_770001 RAL-799 16 chr2L 795269 795283 chr2L 795374 795392 5 108 2.5 0.0 1.2 2.3 123 chr2L 795269 intergenic not near genes chr2L 795330 intergenic not near genes chr2L 795392 intergenic not near genes chr2L_5_795001 chr2L_795001 RAL-799 17 chr2L 849479 849483 chr2L 849568 849574 4 90 3.5 3.5 3.5 0.9 95 chr2L 849479 intron drongo - chr2L 849526 intron drongo - chr2L 849574 intron drongo - chr2L_4_845001 chr2L_845001 RAL-799 18 chr2L 877849 877863 chr2L 877930 877944 9 81 6.5 3.0 4.8 1.6 95 chr2L 877849 3` UTR,exon CG15824 -,ninaA + chr2L 877896 3` UTR,intron CG15824 -,ninaA + chr2L 877944 3` UTR,intron CG15824 -,ninaA + chr2L_9_875001 chr2L_875001 RAL-799 19 chr2L 931645 931660 chr2L 931724 931738 7 79 3.5 4.0 3.8 1.5 93 chr2L 931645 intron CG4341 + chr2L 931692 intron CG4341 + chr2L 931738 intron CG4341 + chr2L_7_930001 chr2L_930001 RAL-799 20 chr2L 976881 976900 chr2L 984517 984536 roo 5 7636 1.5 0.5 1.0 2.5 7655 chr2L 976881 intergenic not near genes chr2L 980708 intergenic not near genes chr2L 984536 intergenic not near genes chr2L_5_980001 chr2L_980001 RAL-799 21 chr2L 1005909 1005933 chr2L 1005993 1006018 8 84 1.5 5.5 3.5 1.8 109 chr2L 1005909 intergenic not near genes chr2L 1005964 intergenic not near genes chr2L 1006018 intergenic not near genes chr2L_8_1005001 chr2L_1005001 RAL-799 22 chr2L 1028845 1028870 chr2L 1028944 1028970 8 100 1.5 1.0 1.2 3.6 125 chr2L 1028845 intron IA-2 - chr2L 1028908 intron IA-2 - chr2L 1028970 intron IA-2 - chr2L_8_1025001 chr2L_1025001 RAL-799 23 chr2L 1035565 1035585 chr2L 1035642 1035662 5 77 2.5 4.0 3.2 1.2 97 chr2L 1035565 intron IA-2 - chr2L 1035614 intron IA-2 - chr2L 1035662 intron IA-2 - chr2L_5_1035001 chr2L_1035001 RAL-799 24 chr2L 1220131 1220160 chr2L 1227597 1227626 blood 8 7466 2.5 3.5 3.0 2.0 7495 chr2L 1220131 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227626 intron CG42329 + chr2L_8_1220001 chr2L_1220001 RAL-799 25 chr2L 1261139 1261260 chr2L 1261221 1261341 9 79 0.0 0.0 0.0 9.0 202 chr2L 1261139 intron robo3 + chr2L 1261240 intron robo3 + chr2L 1261341 intron robo3 + chr2L_9_1260001 chr2L_1260001 RAL-799 26 chr2L 1322022 1322052 chr2L 1322111 1322140 5 89 2.0 2.5 2.2 1.6 118 chr2L 1322022 intergenic not near genes chr2L 1322081 intergenic not near genes chr2L 1322140 intergenic not near genes chr2L_5_1320001 chr2L_1320001 RAL-799 27 chr2L 1564462 1564494 chr2L 1564548 1564581 9 86 3.0 3.5 3.2 2.1 119 chr2L 1564462 intron haf + chr2L 1564522 intron haf + chr2L 1564581 intron haf + chr2L_9_1560001 chr2L_1560001 RAL-799 28 chr2L 1570692 1570716 chr2L 1573564 1573588 F-element 8 2872 2.5 3.5 3.0 2.0 2896 chr2L 1570692 intron haf + chr2L 1572140 intron haf + chr2L 1573588 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-799 29 chr2L 1635395 1635409 chr2L 1635531 1635545 4 136 0.0 2.0 1.0 2.0 150 chr2L 1635395 intergenic not near genes chr2L 1635470 intergenic not near genes chr2L 1635545 intergenic not near genes chr2L_4_1635001 chr2L_1635001 RAL-799 30 chr2L 1678958 1679004 chr2L 1686441 1686468 blood 5 7467 0.0 3.0 1.5 2.0 7510 chr2L 1678958 intron chinmo + chr2L 1682713 intron chinmo + chr2L 1686468 intron chinmo + chr2L_5_1680001 chr2L_1680001 RAL-799 31 chr2L 1711358 1711387 chr2L 1711682 1711711 mdg3 4 324 3.0 2.5 2.8 1.1 353 chr2L 1711358 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711534 3` UTR frtz - chr2L 1711711 3` UTR frtz - chr2L_4_1710001 chr2L_1710001 RAL-799 32 chr2L 1721821 1721853 chr2L 1721905 1721937 11 83 0.0 3.0 1.5 4.4 116 chr2L 1721821 intron Rim2 - chr2L 1721879 intron Rim2 - chr2L 1721937 intron Rim2 - chr2L_11_1720001 chr2L_1720001 RAL-799 33 chr2L 1781905 1781928 chr2L 1782214 1782234 7 308 1.5 2.0 1.8 2.5 329 chr2L 1781905 intergenic not near genes chr2L 1782070 intergenic not near genes chr2L 1782234 intergenic not near genes chr2L_7_1780001 chr2L_1780001 RAL-799 34 chr2L 1819443 1819469 chr2L 1819576 1819602 6 133 0.0 2.0 1.0 3.0 159 chr2L 1819443 intergenic not near genes chr2L 1819522 intergenic not near genes chr2L 1819602 intergenic not near genes chr2L_6_1815001 chr2L_1815001 RAL-799 35 chr2L 1883433 1883445 chr2L 1884013 1884024 4 580 1.5 3.5 2.5 1.1 591 chr2L 1883433 intron CG15358 - chr2L 1883728 intron CG15358 - chr2L 1884024 exon CG15358 - chr2L_4_1880001 chr2L_1880001 RAL-799 36 chr2L 2084407 2084430 chr2L 2085353 2085377 9 946 4.0 2.5 3.2 2.1 970 chr2L 2084407 intron,5` UTR dpr3 -,CR44055 + chr2L 2084892 intron dpr3 - chr2L 2085377 intron dpr3 - chr2L_9_2080001 chr2L_2080001 RAL-799 37 chr2L 2100380 2100398 chr2L 2109530 2109548 roo 7 9150 5.0 3.0 4.0 1.4 9168 chr2L 2100380 intron dpr3 - chr2L 2104964 intron dpr3 - chr2L 2109548 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-799 38 chr2L 2112117 2112141 chr2L 2119779 2119801 opus 7 7661 0.0 1.5 0.8 3.9 7684 chr2L 2112117 intergenic not near genes chr2L 2115959 intergenic not near genes chr2L 2119801 intergenic not near genes chr2L_7_2115001 chr2L_2115001 RAL-799 39 chr2L 2125511 2125543 chr2L 2125853 2125888 9 342 4.0 23.0 13.5 0.6 377 chr2L 2125511 intergenic not near genes chr2L 2125700 intergenic not near genes chr2L 2125888 intergenic not near genes chr2L_9_2125001 chr2L_2125001 RAL-799 40 chr2L 2250423 2250444 chr2L 2251188 2251211 4 766 2.0 0.0 1.0 2.0 788 chr2L 2250423 intergenic Ser12 - chr2L 2250817 exon Ser12 - chr2L 2251211 exon Ser12 - chr2L_4_2250001 chr2L_2250001 RAL-799 41 chr2L 2260804 2260836 chr2L 2260889 2260922 10 86 2.5 0.5 1.5 4.0 118 chr2L 2260804 intergenic not near genes chr2L 2260863 intergenic not near genes chr2L 2260922 intergenic not near genes chr2L_10_2260001 chr2L_2260001 RAL-799 42 chr2L 2290600 2290610 chr2L 2290676 2290685 5 74 0.5 10.0 5.2 0.8 85 chr2L 2290600 exon robl22E - chr2L 2290642 5` UTR robl22E - chr2L 2290685 intron robl22E - chr2L_5_2290001 chr2L_2290001 RAL-799 43 chr2L 2294044 2294069 chr2L 2299249 2299274 copia 7 5203 1.0 1.5 1.2 3.2 5230 chr2L 2294044 intergenic not near genes chr2L 2296659 intergenic not near genes chr2L 2299274 intergenic not near genes chr2L_7_2295001 chr2L_2295001 RAL-799 44 chr2L 2302057 2302076 chr2L 2302139 2302157 7 82 4.0 4.5 4.2 1.3 100 chr2L 2302057 intergenic not near genes chr2L 2302107 intergenic not near genes chr2L 2302157 intergenic not near genes chr2L_7_2300001 chr2L_2300001 RAL-799 45 chr2L 2311074 2311089 chr2L 2311169 2311185 4 96 1.5 0.0 0.8 2.2 111 chr2L 2311074 intron CG9967 - chr2L 2311130 intron CG9967 - chr2L 2311185 intron CG9967 - chr2L_4_2310001 chr2L_2310001 RAL-799 46 chr2L 2334186 2334218 chr2L 2334338 2334370 6 152 0.5 1.5 1.0 3.0 184 chr2L 2334186 intron,intron CG9967 -,eys + chr2L 2334278 intron,intron CG9967 -,eys + chr2L 2334370 intron,intron CG9967 -,eys + chr2L_6_2330001 chr2L_2330001 RAL-799 47 chr2L 2661205 2661234 chr2L 2663043 2663072 I-element 5 1832 0.5 1.5 1.0 2.5 1867 chr2L 2661205 intergenic not near genes chr2L 2662138 intergenic not near genes chr2L 2663072 intergenic not near genes chr2L_5_2660001 chr2L_2660001 RAL-799 48 chr2L 2667624 2667655 chr2L 2667703 2667734 12 76 4.0 1.5 2.8 3.2 110 chr2L 2667624 intergenic not near genes chr2L 2667679 intergenic not near genes chr2L 2667734 intergenic not near genes chr2L_12_2665001 chr2L_2665001 RAL-799 49 chr2L 2804239 2804273 chr2L 2804328 2804361 8 88 1.5 4.5 3.0 2.0 122 chr2L 2804239 intergenic not near genes chr2L 2804300 intergenic not near genes chr2L 2804361 intergenic not near genes chr2L_8_2800001 chr2L_2800001 RAL-799 50 chr2L 2933305 2933318 chr2L 2935484 2935497 pogo 5 2177 1.5 1.0 1.2 2.3 2192 chr2L 2933305 intron lilli + chr2L 2934401 intron lilli + chr2L 2935497 intron lilli + chr2L_5_2930001 chr2L_2930001 RAL-799 51 chr2L 3073031 3073063 chr2L 3078234 3078265 copia 7 5203 1.5 3.5 2.5 2.0 5234 chr2L 3073031 intron toc - chr2L 3075648 intron toc - chr2L 3078265 intron toc - chr2L_7_3075001 chr2L_3075001 RAL-799 52 chr2L 3147277 3147308 chr2L 3147354 3147368 16 74 3.0 5.5 4.2 3.1 91 chr2L 3147277 3` UTR Mad - chr2L 3147322 3` UTR Mad - chr2L 3147368 3` UTR Mad - chr2L_16_3145001 chr2L_3145001 RAL-799 53 chr2L 3192211 3192240 chr2L 3192321 3192351 11 110 0.5 2.5 1.5 4.4 140 chr2L 3192211 exon CG34393 - chr2L 3192281 intron CG34393 - chr2L 3192351 intron CG34393 - chr2L_11_3190001 chr2L_3190001 RAL-799 54 chr2L 3202738 3202771 chr2L 3210167 3210193 mdg1 5 7427 1.5 2.5 2.0 1.7 7455 chr2L 3202738 intergenic not near genes chr2L 3206466 intergenic not near genes chr2L 3210193 intergenic CR45336 + chr2L_5_3205001 chr2L_3205001 RAL-799 55 chr2L 3251497 3251526 chr2L 3259062 3259091 springer 8 7565 1.5 2.0 1.8 2.9 7594 chr2L 3251497 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259091 intergenic not near genes chr2L_8_3255001 chr2L_3255001 RAL-799 56 chr2L 3286750 3286773 chr2L 3286828 3286851 4 78 1.5 3.0 2.2 1.2 101 chr2L 3286750 intergenic not near genes chr2L 3286800 intergenic not near genes chr2L 3286851 intergenic not near genes chr2L_4_3285001 chr2L_3285001 RAL-799 57 chr2L 3291237 3291270 chr2L 3291317 3291350 11 78 0.5 3.0 1.8 3.9 113 chr2L 3291237 intergenic CG9664 - chr2L 3291294 3` UTR CG9664 - chr2L 3291350 3` UTR CG9664 - chr2L_11_3290001 chr2L_3290001 RAL-799 58 chr2L 3319088 3319106 chr2L 3319164 3319182 4 76 2.0 0.0 1.0 2.0 94 chr2L 3319088 exon CG3326 - chr2L 3319135 intron CG3326 - chr2L 3319182 intron CG3326 - chr2L_4_3315001 chr2L_3315001 RAL-799 59 chr2L 3386245 3386268 chr2L 3386352 3386376 6 107 2.0 3.0 2.5 1.7 131 chr2L 3386245 intergenic not near genes chr2L 3386310 intergenic not near genes chr2L 3386376 intergenic CR45301 - chr2L_6_3385001 chr2L_3385001 RAL-799 60 chr2L 3548589 3548612 chr2L 3548666 3548691 8 79 1.5 1.5 1.5 3.2 102 chr2L 3548589 intergenic drm + chr2L 3548640 intergenic drm + chr2L 3548691 intergenic drm + chr2L_8_3545001 chr2L_3545001 RAL-799 61 chr2L 3584676 3584703 chr2L 3584751 3584779 4 75 0.5 1.5 1.0 2.0 103 chr2L 3584676 intergenic not near genes chr2L 3584728 intergenic not near genes chr2L 3584779 intergenic not near genes chr2L_4_3580001 chr2L_3580001 RAL-799 62 chr2L 3638152 3638168 chr2L 3638237 3638253 10 85 2.0 3.5 2.8 2.6 101 chr2L 3638152 intron for - chr2L 3638202 intron for - chr2L 3638253 intron for - chr2L_10_3635001 chr2L_3635001 RAL-799 63 chr2L 3649791 3649804 chr2L 3654992 3655006 copia 4 5202 1.0 3.0 2.0 1.3 5215 chr2L 3649791 intron for - chr2L 3652398 intron for - chr2L 3655006 intron for - chr2L_4_3650001 chr2L_3650001 RAL-799 64 chr2L 3702902 3702910 chr2L 3702988 3702996 4 86 2.0 4.0 3.0 1.0 94 chr2L 3702902 5` UTR CR44311 + chr2L 3702949 intergenic CR44311 + chr2L 3702996 intergenic CR44311 + chr2L_4_3700001 chr2L_3700001 RAL-799 65 chr2L 3783249 3783271 chr2L 3783340 3783362 5 91 3.0 1.5 2.2 1.6 113 chr2L 3783249 exon bowl + chr2L 3783306 3` UTR bowl + chr2L 3783362 3` UTR bowl + chr2L_5_3780001 chr2L_3780001 RAL-799 66 chr2L 3784697 3784726 chr2L 3786362 3786383 4 1664 15.0 7.5 11.2 0.3 1686 chr2L 3784697 intergenic CG31960 + chr2L 3785540 3` UTR CG31960 + chr2L 3786383 intergenic CG31958 + chr2L_4_3785001 chr2L_3785001 RAL-799 67 chr2L 3891900 3891924 chr2L 3891985 3892009 6 84 1.5 1.5 1.5 2.4 109 chr2L 3891900 intron capu - chr2L 3891954 intron capu - chr2L 3892009 intron capu - chr2L_6_3890001 chr2L_3890001 RAL-799 68 chr2L 3950091 3950104 chr2L 3950167 3950180 4 76 1.5 1.0 1.2 1.8 89 chr2L 3950091 intron fred - chr2L 3950136 intron fred - chr2L 3950180 intron fred - chr2L_4_3950001 chr2L_3950001 RAL-799 69 chr2L 3968314 3968347 chr2L 3968413 3968447 6 99 2.0 0.5 1.2 2.7 133 chr2L 3968314 intron fred - chr2L 3968380 intron fred - chr2L 3968447 intron fred - chr2L_6_3965001 chr2L_3965001 RAL-799 70 chr2L 4125251 4125279 chr2L 4125355 4125384 8 105 2.0 2.0 2.0 2.7 133 chr2L 4125251 intergenic not near genes chr2L 4125318 intergenic not near genes chr2L 4125384 intergenic not near genes chr2L_8_4125001 chr2L_4125001 RAL-799 71 chr2L 4150621 4150651 chr2L 4150701 4150731 4 80 0.0 0.0 0.0 4.0 110 chr2L 4150621 exon CG2955 + chr2L 4150676 exon CG2955 + chr2L 4150731 exon CG2955 + chr2L_4_4150001 chr2L_4150001 RAL-799 72 chr2L 4152252 4152252 chr2L 16217660 16217660 4 12065408 13.5 12.5 13.0 0.3 12065408 chr2L 4152252 intergenic not near genes chr2L 10184956 exon Sur - chr2L 16217660 intergenic not near genes chr2L_4_10180001 chr2L_10180001 RAL-799 73 chr2L 4317881 4317911 chr2L 4317959 4317988 7 78 2.0 1.0 1.5 2.8 107 chr2L 4317881 intron tutl + chr2L 4317934 intron tutl + chr2L 4317988 intron tutl + chr2L_7_4315001 chr2L_4315001 RAL-799 74 chr2L 4601709 4601732 chr2L 4609149 4609173 mdg1 7 7441 2.5 4.0 3.2 1.7 7464 chr2L 4601709 intron dp - chr2L 4605441 intron dp - chr2L 4609173 intron dp - chr2L_7_4605001 chr2L_4605001 RAL-799 75 chr2L 4622435 4622445 chr2L 4622520 4622531 4 85 1.0 2.0 1.5 1.6 96 chr2L 4622435 intergenic not near genes chr2L 4622483 intergenic not near genes chr2L 4622531 intergenic not near genes chr2L_4_4620001 chr2L_4620001 RAL-799 76 chr2L 4701837 4701867 chr2L 4701979 4702006 12 141 2.5 2.5 2.5 3.4 169 chr2L 4701837 intron CG34351 + chr2L 4701922 intron CG34351 + chr2L 4702006 intron CG34351 + chr2L_12_4700001 chr2L_4700001 RAL-799 77 chr2L 4748702 4748725 chr2L 4748780 4748804 8 79 1.5 5.0 3.2 1.9 102 chr2L 4748702 intron CG15630 - chr2L 4748753 intron CG15630 - chr2L 4748804 intron CG15630 - chr2L_8_4745001 chr2L_4745001 RAL-799 78 chr2L 4789921 4789953 chr2L 4790005 4790036 9 83 2.5 1.5 2.0 3.0 115 chr2L 4789921 intron CG15630 - chr2L 4789978 intron CG15630 - chr2L 4790036 intron CG15630 - chr2L_9_4785001 chr2L_4785001 RAL-799 79 chr2L 4819494 4819516 chr2L 4819617 4819638 11 123 2.0 3.5 2.8 2.9 144 chr2L 4819494 intergenic not near genes chr2L 4819566 intergenic not near genes chr2L 4819638 intergenic not near genes chr2L_11_4815001 chr2L_4815001 RAL-799 80 chr2L 4825713 4825743 chr2L 4825793 4825823 4 80 1.0 1.5 1.2 1.8 110 chr2L 4825713 intron CG15628 + chr2L 4825768 intron CG15628 + chr2L 4825823 intron CG15628 + chr2L_4_4825001 chr2L_4825001 RAL-799 81 chr2L 4849312 4849332 chr2L 4849395 4849404 8 81 3.5 1.0 2.2 2.5 92 chr2L 4849312 exon CG11927 + chr2L 4849358 3` UTR CG11927 + chr2L 4849404 3` UTR CG11927 + chr2L_8_4845001 chr2L_4845001 RAL-799 82 chr2L 4862283 4862306 chr2L 4862359 4862381 5 76 4.0 5.5 4.8 0.9 98 chr2L 4862283 intron pog + chr2L 4862332 intron pog + chr2L 4862381 intron pog + chr2L_5_4860001 chr2L_4860001 RAL-799 83 chr2L 4918167 4918188 chr2L 4923240 4923243 jockey 5 5069 2.5 2.0 2.2 1.6 5076 chr2L 4918167 intron hoe1 - chr2L 4920705 intron hoe1 - chr2L 4923243 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-799 84 chr2L 4953520 4953536 chr2L 4953761 4953777 pogo 4 241 1.5 2.0 1.8 1.4 257 chr2L 4953520 intergenic Jon25Bii - chr2L 4953648 intergenic not near genes chr2L 4953777 intergenic not near genes chr2L_4_4950001 chr2L_4950001 RAL-799 85 chr2L 4993220 4993229 chr2L 4993304 4993313 6 84 3.0 3.0 3.0 1.5 93 chr2L 4993220 intergenic Rtnl1 - chr2L 4993266 intergenic Rtnl1 - chr2L 4993313 intergenic Rtnl1 - chr2L_6_4990001 chr2L_4990001 RAL-799 86 chr2L 5040705 5040713 chr2L 5040801 5040809 4 96 2.0 5.0 3.5 0.9 104 chr2L 5040705 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040757 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040809 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_4_5040001 chr2L_5040001 RAL-799 87 chr2L 5092412 5092443 chr2L 5092499 5092502 7 83 0.5 1.0 0.8 3.9 90 chr2L 5092412 intron pgant5 - chr2L 5092457 intron pgant5 - chr2L 5092502 intron pgant5 - chr2L_7_5090001 chr2L_5090001 RAL-799 88 chr2L 5200539 5200562 chr2L 5215799 5215810 11 15253 27.5 20.5 24.0 0.4 15271 chr2L 5200539 exon Msp300 + chr2L 5208174 exon Cyp28d2 + chr2L 5215810 exon CG14034 - chr2L_11_5205001 chr2L_5205001 RAL-799 89 chr2L 5242936 5242936 chr2L 16217660 16217660 5 10974724 17.5 12.5 15.0 0.3 10974724 chr2L 5242936 intron tkv - chr2L 10730298 3` UTR,5` UTR CG6443 +,CG17118 + chr2L 16217660 intergenic not near genes chr2L_5_10730001 chr2L_10730001 RAL-799 90 chr2L 5269995 5270020 chr2L 5270073 5270098 10 78 6.0 4.5 5.2 1.6 103 chr2L 5269995 intron,exon tkv -,Cyp4ac3 + chr2L 5270046 intron,exon tkv -,Cyp4ac3 + chr2L 5270098 intron,exon tkv -,Cyp4ac3 + chr2L_10_5270001 chr2L_5270001 RAL-799 91 chr2L 5677187 5677217 chr2L 5677285 5677314 9 98 1.5 2.0 1.8 3.2 127 chr2L 5677187 intergenic not near genes chr2L 5677250 intergenic not near genes chr2L 5677314 intergenic not near genes chr2L_9_5675001 chr2L_5675001 RAL-799 92 chr2L 5726219 5726232 chr2L 5726296 5726311 7 79 2.0 0.0 1.0 3.5 92 chr2L 5726219 intron CG11030 + chr2L 5726265 intron CG11030 + chr2L 5726311 intron CG11030 + chr2L_7_5725001 chr2L_5725001 RAL-799 93 chr2L 5777210 5777242 chr2L 5777299 5777331 7 89 1.5 3.5 2.5 2.0 121 chr2L 5777210 intron CG9171 - chr2L 5777270 intron CG9171 - chr2L 5777331 intron CG9171 - chr2L_7_5775001 chr2L_5775001 RAL-799 94 chr2L 5819676 5819704 chr2L 5819760 5819788 4 84 1.0 0.5 0.8 2.2 112 chr2L 5819676 intergenic not near genes chr2L 5819732 intergenic not near genes chr2L 5819788 intergenic not near genes chr2L_4_5815001 chr2L_5815001 RAL-799 95 chr2L 5827707 5827737 chr2L 5836715 5836745 roo 11 9008 2.5 3.0 2.8 2.9 9038 chr2L 5827707 intron TrissinR + chr2L 5832226 intron TrissinR + chr2L 5836745 intron TrissinR + chr2L_11_5830001 chr2L_5830001 RAL-799 96 chr2L 5931503 5931528 chr2L 5931587 5931610 7 84 1.5 1.0 1.2 3.2 107 chr2L 5931503 intron dsf + chr2L 5931556 intron dsf + chr2L 5931610 intron dsf + chr2L_7_5930001 chr2L_5930001 RAL-799 97 chr2L 6002437 6002463 chr2L 6002523 6002549 4 86 1.0 1.0 1.0 2.0 112 chr2L 6002437 3` UTR Tsp26A + chr2L 6002493 3` UTR Tsp26A + chr2L 6002549 3` UTR Tsp26A + chr2L_4_6000001 chr2L_6000001 RAL-799 98 chr2L 6133578 6133609 chr2L 6133667 6133701 4 88 4.5 1.5 3.0 1.0 123 chr2L 6133578 3` UTR CR45719 - chr2L 6133640 3` UTR CR45719 - chr2L 6133701 intergenic CR45719 - chr2L_4_6130001 chr2L_6130001 RAL-799 99 chr2L 6299807 6299835 chr2L 6299978 6300006 8 170 2.0 4.0 3.0 2.0 199 chr2L 6299807 intron Ddr + chr2L 6299906 intron Ddr + chr2L 6300006 intron Ddr + chr2L_8_6295001 chr2L_6295001 RAL-799 100 chr2L 6426854 6426888 chr2L 6445114 6445148 roo 12 18260 3.0 4.5 3.8 2.5 18294 chr2L 6426854 3` UTR CG9527 - chr2L 6436001 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_12_6435001 chr2L_6435001 RAL-799 101 chr2L 6590104 6590125 chr2L 6590170 6590175 4 68 3.0 2.5 2.8 1.1 71 chr2L 6590104 intron CG11319 - chr2L 6590140 intron CG11319 - chr2L 6590175 intron CG11319 - chr2L_4_6590001 chr2L_6590001 RAL-799 102 chr2L 6626888 6626920 chr2L 6626973 6627003 7 84 3.0 3.0 3.0 1.8 115 chr2L 6626888 intron Oatp26F - chr2L 6626946 intron Oatp26F - chr2L 6627003 intron Oatp26F - chr2L_7_6625001 chr2L_6625001 RAL-799 103 chr2L 6746098 6746117 chr2L 6746174 6746193 4 76 1.0 1.5 1.2 1.8 95 chr2L 6746098 intron CG11221 + chr2L 6746146 intron CG11221 + chr2L 6746193 intron CG11221 + chr2L_4_6745001 chr2L_6745001 RAL-799 104 chr2L 6771986 6772018 chr2L 6772073 6772082 10 81 2.0 1.0 1.5 4.0 96 chr2L 6771986 intron CG11321 - chr2L 6772034 intron CG11321 - chr2L 6772082 intron CG11321 - chr2L_10_6770001 chr2L_6770001 RAL-799 105 chr2L 6850379 6850414 chr2L 6850462 6850497 10 81 3.5 1.5 2.5 2.9 118 chr2L 6850379 intergenic not near genes chr2L 6850438 intergenic not near genes chr2L 6850497 intergenic not near genes chr2L_10_6850001 chr2L_6850001 RAL-799 106 chr2L 6891445 6891471 chr2L 6891543 6891569 4 98 1.5 2.5 2.0 1.3 124 chr2L 6891445 intron Nlg2 + chr2L 6891507 intron Nlg2 + chr2L 6891569 intron Nlg2 + chr2L_4_6890001 chr2L_6890001 RAL-799 107 chr2L 7007411 7007426 chr2L 7007514 7007529 7 103 2.5 2.0 2.2 2.2 118 chr2L 7007411 intron uif - chr2L 7007470 intron uif - chr2L 7007529 intron uif - chr2L_7_7005001 chr2L_7005001 RAL-799 108 chr2L 7043512 7043514 chr2L 7043598 7043601 4 87 2.5 0.0 1.2 1.8 89 chr2L 7043512 intron milt + chr2L 7043556 intron milt + chr2L 7043601 intron milt + chr2L_4_7040001 chr2L_7040001 RAL-799 109 chr2L 7051157 7051161 chr2L 7051229 7051237 4 75 0.0 0.5 0.2 3.3 80 chr2L 7051157 intron milt + chr2L 7051197 intron milt + chr2L 7051237 intron milt + chr2L_4_7050001 chr2L_7050001 RAL-799 110 chr2L 7103079 7103097 chr2L 7103297 7103316 6 218 0.0 1.0 0.5 4.0 237 chr2L 7103079 intron Pvf3 - chr2L 7103198 intron Pvf3 - chr2L 7103316 intron Pvf3 - chr2L_6_7100001 chr2L_7100001 RAL-799 111 chr2L 7197998 7198012 chr2L 7198077 7198091 7 79 4.0 2.5 3.2 1.7 93 chr2L 7197998 intron CG4502 - chr2L 7198044 intron CG4502 - chr2L 7198091 intron CG4502 - chr2L_7_7195001 chr2L_7195001 RAL-799 112 chr2L 7217236 7217270 chr2L 7217341 7217375 10 105 1.0 2.5 1.8 3.6 139 chr2L 7217236 intron CG13784 - chr2L 7217306 intron CG13784 - chr2L 7217375 intron CG13784 - chr2L_10_7215001 chr2L_7215001 RAL-799 113 chr2L 7249625 7249647 chr2L 7249708 7249730 5 83 2.0 1.0 1.5 2.0 105 chr2L 7249625 intergenic Ndae1 - chr2L 7249678 intergenic Ndae1 - chr2L 7249730 intergenic Ndae1 - chr2L_5_7245001 chr2L_7245001 RAL-799 114 chr2L 7343332 7343358 chr2L 7350439 7350474 roo 11 7115 3.0 3.5 3.2 2.6 7142 chr2L 7343332 intron Wnt6 + chr2L 7346903 intron Wnt6 + chr2L 7350474 intron Wnt6 + chr2L_11_7345001 chr2L_7345001 RAL-799 115 chr2L 7539458 7539474 chr2L 7539540 7539554 5 81 1.5 3.0 2.2 1.6 96 chr2L 7539458 intron RapGAP1 - chr2L 7539506 intron RapGAP1 - chr2L 7539554 intron RapGAP1 - chr2L_5_7535001 chr2L_7535001 RAL-799 116 chr2L 7678479 7678494 chr2L 7678592 7678607 8 112 4.0 4.5 4.2 1.5 128 chr2L 7678479 intron Myo28B1 + chr2L 7678543 intron Myo28B1 + chr2L 7678607 intron Myo28B1 + chr2L_8_7675001 chr2L_7675001 RAL-799 117 chr2L 7900567 7900590 chr2L 7900677 7900703 7 113 1.5 2.5 2.0 2.3 136 chr2L 7900567 intron Snoo - chr2L 7900635 intron Snoo - chr2L 7900703 intron Snoo - chr2L_7_7900001 chr2L_7900001 RAL-799 118 chr2L 7922743 7922776 chr2L 7922824 7922856 6 81 0.5 1.5 1.0 3.0 113 chr2L 7922743 intron Snoo - chr2L 7922800 intron Snoo - chr2L 7922856 intron Snoo - chr2L_6_7920001 chr2L_7920001 RAL-799 119 chr2L 7959041 7959070 chr2L 7960452 7960481 pogo 12 1411 2.0 2.5 2.2 3.8 1440 chr2L 7959041 intron Snoo - chr2L 7959761 intron Snoo - chr2L 7960481 intron Snoo - chr2L_12_7955001 chr2L_7955001 RAL-799 120 chr2L 8018821 8018830 chr2L 8023605 8023614 Doc 4 4784 1.0 3.5 2.2 1.2 4793 chr2L 8018821 intron Tg + chr2L 8021218 intron Tg + chr2L 8023614 intron Tg + chr2L_4_8020001 chr2L_8020001 RAL-799 121 chr2L 8044103 8044122 chr2L 8044182 8044201 4 79 3.5 4.0 3.8 0.8 98 chr2L 8044103 intron CG7466 + chr2L 8044152 intron CG7466 + chr2L 8044201 intron CG7466 + chr2L_4_8040001 chr2L_8040001 RAL-799 122 chr2L 8167143 8167181 chr2L 8167234 8167261 8 89 0.5 3.0 1.8 2.9 118 chr2L 8167143 intron Piezo + chr2L 8167202 intron Piezo + chr2L 8167261 intron Piezo + chr2L_8_8165001 chr2L_8165001 RAL-799 123 chr2L 8204434 8204448 chr2L 8205047 8205061 6 613 2.0 2.5 2.2 1.9 627 chr2L 8204434 intron,intron SLC5A11 -,CR44119 + chr2L 8204748 5` UTR,5` UTR SLC5A11 -,CR44119 + chr2L 8205061 5` UTR,5` UTR SLC5A11 -,CR44119 + chr2L_6_8200001 chr2L_8200001 RAL-799 124 chr2L 8244731 8244749 chr2L 8244853 8244871 5 122 1.0 2.0 1.5 2.0 140 chr2L 8244731 intron CG8086 - chr2L 8244801 intron CG8086 - chr2L 8244871 intron CG8086 - chr2L_5_8240001 chr2L_8240001 RAL-799 125 chr2L 8277856 8277867 chr2L 8277936 8277947 4 80 0.0 0.0 0.0 4.0 91 chr2L 8277856 intron Btk29A - chr2L 8277902 intron Btk29A - chr2L 8277947 intron Btk29A - chr2L_4_8275001 chr2L_8275001 RAL-799 126 chr2L 8287323 8287345 chr2L 8287553 8287575 6 230 0.0 1.5 0.8 3.3 252 chr2L 8287323 intron Btk29A - chr2L 8287449 intron Btk29A - chr2L 8287575 intron Btk29A - chr2L_6_8285001 chr2L_8285001 RAL-799 127 chr2L 8336946 8336965 chr2L 8337025 8337044 5 79 2.0 3.5 2.8 1.3 98 chr2L 8336946 intergenic not near genes chr2L 8336995 intergenic not near genes chr2L 8337044 intergenic not near genes chr2L_5_8335001 chr2L_8335001 RAL-799 128 chr2L 8452420 8452453 chr2L 8461591 8461623 roo 7 9170 2.5 1.0 1.8 2.5 9203 chr2L 8452420 intron fu12 - chr2L 8457022 intron fu12 - chr2L 8461623 intron fu12 - chr2L_7_8455001 chr2L_8455001 RAL-799 129 chr2L 8498207 8498239 chr2L 8498288 8498320 5 81 0.0 2.0 1.0 2.5 113 chr2L 8498207 intron Dh31 - chr2L 8498264 intron Dh31 - chr2L 8498320 intron Dh31 - chr2L_5_8495001 chr2L_8495001 RAL-799 130 chr2L 8538163 8538175 chr2L 8538239 8538251 4 76 3.5 0.0 1.8 1.4 88 chr2L 8538163 intron CG17834 + chr2L 8538207 intron CG17834 + chr2L 8538251 intron CG17834 + chr2L_4_8535001 chr2L_8535001 RAL-799 131 chr2L 8604967 8604996 chr2L 8605065 8605094 7 98 3.0 2.5 2.8 1.8 127 chr2L 8604967 intron Sema-1a + chr2L 8605030 intron Sema-1a + chr2L 8605094 intron Sema-1a + chr2L_7_8605001 chr2L_8605001 RAL-799 132 chr2L 8723114 8723139 chr2L 8731490 8731515 Tirant 8 8377 2.0 2.0 2.0 2.7 8401 chr2L 8723114 intron raw - chr2L 8727314 intron raw - chr2L 8731515 intron raw - chr2L_8_8725001 chr2L_8725001 RAL-799 133 chr2L 8770590 8770622 chr2L 8770782 8770813 9 190 3.0 3.5 3.2 2.1 223 chr2L 8770590 exon CG9465 - chr2L 8770702 exon CG9465 - chr2L 8770813 exon CG9465 - chr2L_9_8770001 chr2L_8770001 RAL-799 134 chr2L 8784710 8784722 chr2L 8784821 8784833 7 111 1.5 1.5 1.5 2.8 123 chr2L 8784710 intergenic not near genes chr2L 8784772 intergenic not near genes chr2L 8784833 intergenic not near genes chr2L_7_8780001 chr2L_8780001 RAL-799 135 chr2L 8789311 8789343 chr2L 8789387 8789419 9 76 2.0 2.5 2.2 2.8 108 chr2L 8789311 intergenic not near genes chr2L 8789365 intergenic not near genes chr2L 8789419 intergenic not near genes chr2L_9_8785001 chr2L_8785001 RAL-799 136 chr2L 8799800 8799823 chr2L 8799915 8799938 6 115 2.5 0.0 1.2 2.7 138 chr2L 8799800 intergenic not near genes chr2L 8799869 intergenic not near genes chr2L 8799938 intergenic not near genes chr2L_6_8795001 chr2L_8795001 RAL-799 137 chr2L 8910723 8910747 chr2L 8910814 8910837 5 91 1.5 2.0 1.8 1.8 114 chr2L 8910723 intron CG34398 + chr2L 8910780 intron CG34398 + chr2L 8910837 intron CG34398 + chr2L_5_8910001 chr2L_8910001 RAL-799 138 chr2L 8997940 8997959 chr2L 8998057 8998070 9 117 3.0 7.5 5.2 1.5 130 chr2L 8997940 exon CG18661 + chr2L 8998005 exon CG18661 + chr2L 8998070 exon CG18661 + chr2L_9_8995001 chr2L_8995001 RAL-799 139 chr2L 9000278 9000307 chr2L 9007788 9007817 roo 8 7510 3.5 3.0 3.2 1.9 7539 chr2L 9000278 intergenic Try29F + chr2L 9004048 intergenic not near genes chr2L 9007817 intergenic not near genes chr2L_8_9000001 chr2L_9000001 RAL-799 140 chr2L 9040899 9040909 chr2L 9040974 9040985 4 75 2.0 6.0 4.0 0.8 86 chr2L 9040899 intergenic not near genes chr2L 9040942 intergenic not near genes chr2L 9040985 intergenic not near genes chr2L_4_9040001 chr2L_9040001 RAL-799 141 chr2L 9084336 9084340 chr2L 16217660 16217660 17 7133321 14.0 12.5 13.2 1.2 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_17_12650001 chr2L_12650001 RAL-799 142 chr2L 9268205 9268222 chr2L 9268282 9268298 6 75 1.0 1.5 1.2 2.7 93 chr2L 9268205 intron Ggamma30A + chr2L 9268252 intron Ggamma30A + chr2L 9268298 intron Ggamma30A + chr2L_6_9265001 chr2L_9265001 RAL-799 143 chr2L 9280008 9280020 chr2L 9280102 9280114 5 94 0.0 2.0 1.0 2.5 106 chr2L 9280008 intron Ggamma30A + chr2L 9280061 intron Ggamma30A + chr2L 9280114 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 RAL-799 144 chr2L 9393501 9393530 chr2L 9396468 9396497 jockey 4 2967 1.5 2.0 1.8 1.4 2996 chr2L 9393501 intron Shawl - chr2L 9394999 intron Shawl - chr2L 9396497 intron Shawl - chr2L_4_9390001 chr2L_9390001 RAL-799 145 chr2L 9456933 9456962 chr2L 9457014 9457017 7 76 0.5 2.0 1.2 3.2 84 chr2L 9456933 intron numb + chr2L 9456975 intron numb + chr2L 9457017 intron numb + chr2L_7_9455001 chr2L_9455001 RAL-799 146 chr2L 9460755 9460767 chr2L 9460841 9460853 4 86 4.5 0.0 2.2 1.2 98 chr2L 9460755 intron numb + chr2L 9460804 intron numb + chr2L 9460853 intron numb + chr2L_4_9460001 chr2L_9460001 RAL-799 147 chr2L 9495159 9495192 chr2L 9495255 9495288 8 96 0.5 2.0 1.2 3.6 129 chr2L 9495159 intergenic Gdi -,CG33298 + chr2L 9495224 intergenic CG33298 +,Gdi - chr2L 9495288 intergenic CG33298 +,Gdi - chr2L_8_9495001 chr2L_9495001 RAL-799 148 chr2L 9498358 9498386 chr2L 9498438 9498466 5 79 2.5 3.0 2.8 1.3 108 chr2L 9498358 intron CG33298 + chr2L 9498412 intron CG33298 + chr2L 9498466 intron CG33298 + chr2L_5_9495001 chr2L_9495001 RAL-799 149 chr2L 9506423 9506440 chr2L 9506573 9506590 5 150 2.5 1.5 2.0 1.7 167 chr2L 9506423 intron CG33298 + chr2L 9506506 intron CG33298 + chr2L 9506590 intron CG33298 + chr2L_5_9505001 chr2L_9505001 RAL-799 150 chr2L 9837433 9837444 chr2L 9837511 9837522 6 78 0.5 2.0 1.2 2.7 89 chr2L 9837433 intron nAChRalpha6 - chr2L 9837478 intron nAChRalpha6 - chr2L 9837522 intron nAChRalpha6 - chr2L_6_9835001 chr2L_9835001 RAL-799 151 chr2L 9973730 9973751 chr2L 9980848 9980869 HMS-Beagle 9 7118 4.5 7.0 5.8 1.3 7139 chr2L 9973730 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980869 intergenic not near genes chr2L_9_9975001 chr2L_9975001 RAL-799 152 chr2L 10051724 10051753 chr2L 10051809 10051836 16 84 3.0 4.5 3.8 3.3 112 chr2L 10051724 5` UTR CR44874 + chr2L 10051780 5` UTR CR44874 + chr2L 10051836 5` UTR CR44874 + chr2L_16_10050001 chr2L_10050001 RAL-799 153 chr2L 10087478 10087486 chr2L 10087555 10087557 4 76 4.5 5.0 4.8 0.7 79 chr2L 10087478 intron CG44153 - chr2L 10087518 intron CG44153 - chr2L 10087557 intron CG44153 - chr2L_4_10085001 chr2L_10085001 RAL-799 154 chr2L 10152847 10152867 chr2L 10152938 10152957 11 90 3.5 7.0 5.2 1.8 110 chr2L 10152847 intron,intron CG44153 -,CG4839 + chr2L 10152902 intron,intron CG44153 -,CG4839 + chr2L 10152957 intron,exon CG44153 -,CG4839 + chr2L_11_10150001 chr2L_10150001 RAL-799 155 chr2L 10156321 10156346 chr2L 10163791 10163816 blood 7 7470 2.5 2.5 2.5 2.0 7495 chr2L 10156321 intron,3` UTR CG44153 -,CG4839 + chr2L 10160068 intron CG44153 - chr2L 10163816 intron CG44153 - chr2L_7_10160001 chr2L_10160001 RAL-799 156 chr2L 10563916 10563945 chr2L 10564009 10564038 6 91 2.0 0.5 1.2 2.7 122 chr2L 10563916 intron Trim9 + chr2L 10563977 intron Trim9 + chr2L 10564038 intron Trim9 + chr2L_6_10560001 chr2L_10560001 RAL-799 157 chr2L 10572700 10572734 chr2L 10572781 10572815 14 81 2.5 2.0 2.2 4.4 115 chr2L 10572700 intron Trim9 + chr2L 10572758 intron Trim9 + chr2L 10572815 intron Trim9 + chr2L_14_10570001 chr2L_10570001 RAL-799 158 chr2L 10579048 10579080 chr2L 10579138 10579170 4 90 1.0 0.5 0.8 2.2 122 chr2L 10579048 intron Trim9 + chr2L 10579109 intron Trim9 + chr2L 10579170 intron Trim9 + chr2L_4_10575001 chr2L_10575001 RAL-799 159 chr2L 10640640 10640672 chr2L 10640729 10640761 17 88 4.0 4.5 4.2 3.3 121 chr2L 10640640 exon CG31872 + chr2L 10640700 exon CG31872 + chr2L 10640761 exon CG31872 + chr2L_17_10640001 chr2L_10640001 RAL-799 160 chr2L 10785061 10785089 chr2L 10785137 10785165 9 76 4.5 2.0 3.2 2.1 104 chr2L 10785061 intron CG31869 - chr2L 10785113 intron CG31869 - chr2L 10785165 intron CG31869 - chr2L_9_10785001 chr2L_10785001 RAL-799 161 chr2L 10789697 10789710 chr2L 10789802 10789814 5 105 1.5 3.0 2.2 1.6 117 chr2L 10789697 intron CG31869 - chr2L 10789756 intron CG31869 - chr2L 10789814 intron CG31869 - chr2L_5_10785001 chr2L_10785001 RAL-799 162 chr2L 10803772 10803794 chr2L 10803857 10803880 4 86 2.0 0.5 1.2 1.8 108 chr2L 10803772 intergenic not near genes chr2L 10803826 intergenic Nos - chr2L 10803880 intergenic Nos - chr2L_4_10800001 chr2L_10800001 RAL-799 163 chr2L 10862842 10862875 chr2L 10864456 10864489 Rt1c 10 1609 3.5 4.5 4.0 2.0 1647 chr2L 10862842 3` UTR CR43807 - chr2L 10863666 intron CR43807 - chr2L 10864489 3` UTR CR43807 - chr2L_10_10860001 chr2L_10860001 RAL-799 164 chr2L 10873052 10873083 chr2L 10873130 10873163 7 77 3.0 3.0 3.0 1.8 111 chr2L 10873052 intergenic not near genes chr2L 10873108 intergenic not near genes chr2L 10873163 intergenic not near genes chr2L_7_10870001 chr2L_10870001 RAL-799 165 chr2L 10944458 10944463 chr2L 10944541 10944546 4 83 0.5 0.5 0.5 2.7 88 chr2L 10944458 intron dpr2 - chr2L 10944502 intron dpr2 - chr2L 10944546 intron dpr2 - chr2L_4_10940001 chr2L_10940001 RAL-799 166 chr2L 10946949 10946976 chr2L 10956163 10956191 roo 11 9215 6.0 5.0 5.5 1.7 9242 chr2L 10946949 intron dpr2 - chr2L 10951570 intron dpr2 - chr2L 10956191 intron dpr2 - chr2L_11_10950001 chr2L_10950001 RAL-799 167 chr2L 11418662 11418686 chr2L 11418741 11418761 8 78 1.0 3.5 2.2 2.5 99 chr2L 11418662 intergenic not near genes chr2L 11418712 intergenic not near genes chr2L 11418761 intergenic not near genes chr2L_8_11415001 chr2L_11415001 RAL-799 168 chr2L 11540327 11540348 chr2L 11540486 11540508 4 160 0.0 1.5 0.8 2.2 181 chr2L 11540327 intergenic not near genes chr2L 11540418 intergenic not near genes chr2L 11540508 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-799 169 chr2L 11540587 11540610 chr2L 11547989 11548012 Tabor 5 7402 0.0 4.0 2.0 1.7 7425 chr2L 11540587 intergenic not near genes chr2L 11544300 intergenic not near genes chr2L 11548012 intergenic not near genes chr2L_5_11540001 chr2L_11540001 RAL-799 170 chr2L 11563639 11563667 chr2L 11568843 11568871 copia 5 5203 2.5 2.0 2.2 1.6 5232 chr2L 11563639 intergenic not near genes chr2L 11566255 intergenic not near genes chr2L 11568871 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-799 171 chr2L 11614068 11614084 chr2L 11615559 11615570 hopper2 5 1492 3.0 1.0 2.0 1.7 1502 chr2L 11614068 intron kek2 + chr2L 11614819 intron kek2 + chr2L 11615570 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-799 172 chr2L 11675574 11675585 chr2L 11675654 11675665 4 80 3.5 2.0 2.8 1.1 91 chr2L 11675574 intergenic not near genes chr2L 11675620 intergenic not near genes chr2L 11675665 intergenic not near genes chr2L_4_11675001 chr2L_11675001 RAL-799 173 chr2L 11713512 11713539 chr2L 11720979 11721006 blood 6 7466 1.0 2.0 1.5 2.4 7494 chr2L 11713512 intergenic not near genes chr2L 11717259 intergenic not near genes chr2L 11721006 intergenic CR44143 + chr2L_6_11715001 chr2L_11715001 RAL-799 174 chr2L 11844185 11844212 chr2L 11844267 11844275 10 80 1.5 0.0 0.8 5.6 90 chr2L 11844185 intron Pde1c - chr2L 11844230 intron Pde1c - chr2L 11844275 intron Pde1c - chr2L_10_11840001 chr2L_11840001 RAL-799 175 chr2L 11854705 11854722 chr2L 11854880 11854897 8 175 1.5 4.0 2.8 2.1 192 chr2L 11854705 intron Pde1c - chr2L 11854801 intron Pde1c - chr2L 11854897 intron Pde1c - chr2L_8_11850001 chr2L_11850001 RAL-799 176 chr2L 12025233 12025236 chr2L 12025311 12025316 6 79 1.5 2.5 2.0 2.0 83 chr2L 12025233 intergenic CR44587 - chr2L 12025274 intergenic CR44587 - chr2L 12025316 intergenic CR44587 - chr2L_6_12025001 chr2L_12025001 RAL-799 177 chr2L 12131072 12131093 chr2L 12131209 12131230 7 137 30.0 17.0 23.5 0.3 158 chr2L 12131072 intron rho-6 - chr2L 12131151 intron rho-6 - chr2L 12131230 intron rho-6 - chr2L_7_12130001 chr2L_12130001 RAL-799 178 chr2L 12239055 12239089 chr2L 12239143 12239177 6 88 0.5 2.0 1.2 2.7 122 chr2L 12239055 intron aret + chr2L 12239116 intron aret + chr2L 12239177 intron aret + chr2L_6_12235001 chr2L_12235001 RAL-799 179 chr2L 12240001 12240024 chr2L 12240082 12240105 8 81 1.5 2.5 2.0 2.7 104 chr2L 12240001 intron aret + chr2L 12240053 intron aret + chr2L 12240105 intron aret + chr2L_8_12240001 chr2L_12240001 RAL-799 180 chr2L 12242153 12242178 chr2L 12242249 12242274 4 96 2.0 2.5 2.2 1.2 121 chr2L 12242153 intron aret + chr2L 12242214 intron aret + chr2L 12242274 intron aret + chr2L_4_12240001 chr2L_12240001 RAL-799 181 chr2L 12411019 12411038 chr2L 12411098 12411114 6 78 1.0 0.5 0.8 3.3 95 chr2L 12411019 intron vir-1 - chr2L 12411066 intron vir-1 - chr2L 12411114 intron vir-1 - chr2L_6_12410001 chr2L_12410001 RAL-799 182 chr2L 12422459 12422494 chr2L 12422542 12422578 9 83 0.0 1.5 0.8 5.0 119 chr2L 12422459 intron vir-1 - chr2L 12422518 intron vir-1 - chr2L 12422578 intron vir-1 - chr2L_9_12420001 chr2L_12420001 RAL-799 183 chr2L 12487897 12487920 chr2L 12487977 12488001 5 81 3.0 8.5 5.8 0.7 104 chr2L 12487897 intron bun - chr2L 12487949 intron bun - chr2L 12488001 intron bun - chr2L_5_12485001 chr2L_12485001 RAL-799 184 chr2L 12529231 12529261 chr2L 12529383 12529413 4 152 0.5 1.0 0.8 2.2 182 chr2L 12529231 intron bun - chr2L 12529322 intron bun - chr2L 12529413 intron bun - chr2L_4_12525001 chr2L_12525001 RAL-799 185 chr2L 12558326 12558353 chr2L 12565455 12565482 HMS-Beagle 12 7127 0.5 4.0 2.2 3.8 7156 chr2L 12558326 intergenic not near genes chr2L 12561904 intergenic not near genes chr2L 12565482 intergenic not near genes chr2L_12_12560001 chr2L_12560001 RAL-799 186 chr2L 12728928 12728949 chr2L 12729170 12729191 pogo 4 242 2.5 3.0 2.8 1.1 263 chr2L 12728928 intron MRP + chr2L 12729060 intron MRP + chr2L 12729191 exon MRP + chr2L_4_12725001 chr2L_12725001 RAL-799 187 chr2L 12731055 12731091 chr2L 12735822 12735858 F-element 7 4767 1.0 1.5 1.2 3.2 4803 chr2L 12731055 intron MRP + chr2L 12733456 intron MRP + chr2L 12735858 intron MRP + chr2L_7_12730001 chr2L_12730001 RAL-799 188 chr2L 12739177 12739204 chr2L 12743958 12743985 Doc 10 4780 2.5 4.0 3.2 2.4 4808 chr2L 12739177 exon MRP + chr2L 12741581 intron MRP + chr2L 12743985 exon MRP + chr2L_10_12740001 chr2L_12740001 RAL-799 189 chr2L 12751312 12751334 chr2L 12751395 12751417 5 83 1.0 2.0 1.5 2.0 105 chr2L 12751312 intergenic not near genes chr2L 12751364 intergenic not near genes chr2L 12751417 intergenic not near genes chr2L_5_12750001 chr2L_12750001 RAL-799 190 chr2L 12763163 12763198 chr2L 12763254 12763289 7 91 2.0 1.0 1.5 2.8 126 chr2L 12763163 intergenic not near genes chr2L 12763226 intergenic not near genes chr2L 12763289 intergenic not near genes chr2L_7_12760001 chr2L_12760001 RAL-799 191 chr2L 12791609 12791625 chr2L 12795284 12795299 F-element 5 3675 2.0 3.0 2.5 1.4 3690 chr2L 12791609 intergenic not near genes chr2L 12793454 intergenic not near genes chr2L 12795299 intergenic not near genes chr2L_5_12790001 chr2L_12790001 RAL-799 192 chr2L 12835559 12835582 chr2L 12835668 12835691 4 109 2.0 0.5 1.2 1.8 132 chr2L 12835559 intergenic not near genes chr2L 12835625 intergenic not near genes chr2L 12835691 intergenic not near genes chr2L_4_12835001 chr2L_12835001 RAL-799 193 chr2L 12861696 12861728 chr2L 12863163 12863195 hobo 7 1467 6.0 3.5 4.8 1.2 1499 chr2L 12861696 intergenic not near genes chr2L 12862446 intergenic not near genes chr2L 12863195 intergenic not near genes chr2L_7_12860001 chr2L_12860001 RAL-799 194 chr2L 12909517 12909547 chr2L 12910049 12910072 14 532 1.0 3.5 2.2 4.4 555 chr2L 12909517 intergenic not near genes chr2L 12909794 intergenic not near genes chr2L 12910072 intergenic not near genes chr2L_14_12905001 chr2L_12905001 RAL-799 195 chr2L 12933850 12933883 chr2L 12941317 12941350 blood 12 7466 4.5 5.0 4.8 2.1 7500 chr2L 12933850 intergenic not near genes chr2L 12937600 intergenic not near genes chr2L 12941350 intergenic not near genes chr2L_12_12935001 chr2L_12935001 RAL-799 196 chr2L 13154115 13154124 chr2L 13154193 13154202 5 78 2.0 0.0 1.0 2.5 87 chr2L 13154115 intergenic not near genes chr2L 13154158 intergenic not near genes chr2L 13154202 intergenic not near genes chr2L_5_13150001 chr2L_13150001 RAL-799 197 chr2L 13231883 13231907 chr2L 13231994 13232018 7 111 3.0 2.0 2.5 2.0 135 chr2L 13231883 intergenic Prosalpha6T + chr2L 13231950 intergenic Prosalpha6T + chr2L 13232018 intergenic Prosalpha6T + chr2L_7_13230001 chr2L_13230001 RAL-799 198 chr2L 13253887 13253919 chr2L 13253975 13254007 4 88 0.5 1.0 0.8 2.2 120 chr2L 13253887 intron CG31728 + chr2L 13253947 intron CG31728 + chr2L 13254007 intron CG31728 + chr2L_4_13250001 chr2L_13250001 RAL-799 199 chr2L 13405646 13405682 chr2L 13410443 13410479 Doc 12 4797 1.5 4.5 3.0 3.0 4833 chr2L 13405646 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410479 intron CG7110 + chr2L_12_13405001 chr2L_13405001 RAL-799 200 chr2L 13412330 13412349 chr2L 13412457 13412476 4 127 0.0 0.5 0.2 3.3 146 chr2L 13412330 intergenic CG16848 + chr2L 13412403 intergenic CG16848 + chr2L 13412476 intergenic CG16848 + chr2L_4_13410001 chr2L_13410001 RAL-799 201 chr2L 13481452 13481474 chr2L 13482055 13482081 jockey 6 606 2.5 3.5 3.0 1.5 629 chr2L 13481452 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482081 intron CG42784 + chr2L_6_13480001 chr2L_13480001 RAL-799 202 chr2L 13761803 13761835 chr2L 13762914 13762945 Doc 5 1111 1.5 2.5 2.0 1.7 1142 chr2L 13761803 intron TM9SF4 + chr2L 13762374 intron TM9SF4 + chr2L 13762945 intron TM9SF4 + chr2L_5_13760001 chr2L_13760001 RAL-799 203 chr2L 13842142 13842163 chr2L 13842226 13842247 6 84 0.5 2.5 1.5 2.4 105 chr2L 13842142 intron CenG1A + chr2L 13842194 intron CenG1A + chr2L 13842247 intron CenG1A + chr2L_6_13840001 chr2L_13840001 RAL-799 204 chr2L 13853083 13853103 chr2L 13862233 13862253 roo 6 9150 5.5 1.5 3.5 1.3 9170 chr2L 13853083 intron CenG1A + chr2L 13857668 intron CenG1A + chr2L 13862253 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-799 205 chr2L 13918814 13918842 chr2L 13918901 13918929 6 87 0.0 1.0 0.5 4.0 115 chr2L 13918814 intron Ance-3 + chr2L 13918872 intron Ance-3 + chr2L 13918929 intron Ance-3 + chr2L_6_13915001 chr2L_13915001 RAL-799 206 chr2L 13981517 13981551 chr2L 13981608 13981642 8 91 0.5 1.5 1.0 4.0 125 chr2L 13981517 exon NimC2 + chr2L 13981580 intron NimC2 + chr2L 13981642 intron NimC2 + chr2L_8_13980001 chr2L_13980001 RAL-799 207 chr2L 13988298 13988305 chr2L 13988384 13988390 5 86 3.0 2.0 2.5 1.4 92 chr2L 13988298 intron rk - chr2L 13988344 intron rk - chr2L 13988390 intron rk - chr2L_5_13985001 chr2L_13985001 RAL-799 208 chr2L 14010420 14010433 chr2L 14010496 14010509 4 74 1.5 3.0 2.2 1.2 89 chr2L 14010420 intergenic not near genes chr2L 14010464 intergenic not near genes chr2L 14010509 intergenic not near genes chr2L_4_14010001 chr2L_14010001 RAL-799 209 chr2L 14073658 14073686 chr2L 14074274 14074302 9 616 5.5 3.0 4.2 1.7 644 chr2L 14073658 intron nAChRalpha5 + chr2L 14073980 intron nAChRalpha5 + chr2L 14074302 intron nAChRalpha5 + chr2L_9_14070001 chr2L_14070001 RAL-799 210 chr2L 14222306 14222328 chr2L 14222393 14222415 8 87 0.5 2.0 1.2 3.6 109 chr2L 14222306 intron Dyrk2 - chr2L 14222360 intron Dyrk2 - chr2L 14222415 intron Dyrk2 - chr2L_8_14220001 chr2L_14220001 RAL-799 211 chr2L 14396197 14396231 chr2L 14398953 14398987 7 2755 15.0 14.0 14.5 0.5 2790 chr2L 14396197 intron elB - chr2L 14397592 intron elB - chr2L 14398987 intron elB - chr2L_7_14395001 chr2L_14395001 RAL-799 212 chr2L 14396036 14396062 chr2L 14399145 14399171 6 3110 18.5 17.5 18.0 0.3 3135 chr2L 14396036 intron elB - chr2L 14397604 intron elB - chr2L 14399171 intron elB - chr2L_6_14395001 chr2L_14395001 RAL-799 213 chr2L 14516417 14516447 chr2L 14516595 14516601 9 175 1.0 2.5 1.8 3.2 184 chr2L 14516417 intergenic not near genes chr2L 14516509 intergenic not near genes chr2L 14516601 intergenic not near genes chr2L_9_14515001 chr2L_14515001 RAL-799 214 chr2L 14564196 14564231 chr2L 14564272 14564307 7 72 3.0 4.5 3.8 1.5 111 chr2L 14564196 intergenic CG3473 - chr2L 14564252 intergenic not near genes chr2L 14564307 intergenic not near genes chr2L_7_14560001 chr2L_14560001 RAL-799 215 chr2L 14588381 14588419 chr2L 14588535 14588573 8 152 0.5 0.5 0.5 5.3 192 chr2L 14588381 intergenic CG42680 - chr2L 14588477 intergenic CG42680 - chr2L 14588573 intergenic CG42680 - chr2L_8_14585001 chr2L_14585001 RAL-799 216 chr2L 14642569 14642602 chr2L 14651732 14651765 roo 4 9163 0.5 0.5 0.5 2.7 9196 chr2L 14642569 intron osp - chr2L 14647167 intron osp - chr2L 14651765 intron osp - chr2L_4_14645001 chr2L_14645001 RAL-799 217 chr2L 15003544 15003569 chr2L 15003628 15003653 8 84 2.0 4.0 3.0 2.0 109 chr2L 15003544 intergenic not near genes chr2L 15003598 intergenic not near genes chr2L 15003653 intergenic not near genes chr2L_8_15000001 chr2L_15000001 RAL-799 218 chr2L 15161250 15161276 chr2L 15161386 15161412 5 133 3.5 2.0 2.8 1.3 162 chr2L 15161250 intergenic CR44770 + chr2L 15161331 intergenic CR44770 + chr2L 15161412 intergenic CR44770 +,CG4168 - chr2L_5_15160001 chr2L_15160001 RAL-799 219 chr2L 15355711 15355740 chr2L 15355789 15355818 5 78 1.5 0.0 0.8 2.8 107 chr2L 15355711 intergenic not near genes chr2L 15355764 intergenic not near genes chr2L 15355818 intergenic not near genes chr2L_5_15355001 chr2L_15355001 RAL-799 220 chr2L 15401276 15401289 chr2L 15401354 15401365 4 78 2.5 1.5 2.0 1.3 89 chr2L 15401276 intergenic not near genes chr2L 15401320 intergenic not near genes chr2L 15401365 intergenic not near genes chr2L_4_15400001 chr2L_15400001 RAL-799 221 chr2L 15417649 15417684 chr2L 15417875 15417904 8 221 1.5 0.0 0.8 4.4 255 chr2L 15417649 intergenic CG44869 - chr2L 15417776 intergenic CG44869 - chr2L 15417904 intergenic CG44869 - chr2L_8_15415001 chr2L_15415001 RAL-799 222 chr2L 15446058 15446073 chr2L 15453527 15453541 blood 6 7469 1.0 2.5 1.8 2.1 7483 chr2L 15446058 intergenic not near genes chr2L 15449800 intergenic not near genes chr2L 15453541 intergenic not near genes chr2L_6_15445001 chr2L_15445001 RAL-799 223 chr2L 15510949 15510967 chr2L 15511043 15511061 5 94 1.5 4.0 2.8 1.3 112 chr2L 15510949 intergenic not near genes chr2L 15511005 intergenic not near genes chr2L 15511061 intergenic not near genes chr2L_5_15510001 chr2L_15510001 RAL-799 224 chr2L 15514320 15514332 chr2L 15514404 15514416 4 84 3.0 6.5 4.8 0.7 96 chr2L 15514320 intergenic not near genes chr2L 15514368 intergenic not near genes chr2L 15514416 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-799 225 chr2L 15535885 15535918 chr2L 15535975 15536005 7 89 4.5 1.5 3.0 1.8 120 chr2L 15535885 intergenic not near genes chr2L 15535945 intergenic not near genes chr2L 15536005 intergenic not near genes chr2L_7_15535001 chr2L_15535001 RAL-799 226 chr2L 15790187 15790214 chr2L 15790263 15790290 5 76 2.0 2.5 2.2 1.6 103 chr2L 15790187 intergenic CG18109 + chr2L 15790238 intergenic CG18109 + chr2L 15790290 intergenic CG18109 + chr2L_5_15790001 chr2L_15790001 RAL-799 227 chr2L 15823352 15823371 chr2L 15823428 15823447 5 76 2.5 0.5 1.5 2.0 95 chr2L 15823352 intergenic CR44601 - chr2L 15823400 intergenic CR44601 - chr2L 15823447 intergenic not near genes chr2L_5_15820001 chr2L_15820001 RAL-799 228 chr2L 15866622 15866642 chr2L 15866699 15866719 4 76 1.5 1.0 1.2 1.8 97 chr2L 15866622 intergenic not near genes chr2L 15866670 intergenic not near genes chr2L 15866719 intergenic not near genes chr2L_4_15865001 chr2L_15865001 RAL-799 229 chr2L 15881040 15881053 chr2L 15881120 15881135 6 82 0.0 3.0 1.5 2.4 95 chr2L 15881040 intergenic not near genes chr2L 15881088 intergenic not near genes chr2L 15881135 intergenic not near genes chr2L_6_15880001 chr2L_15880001 RAL-799 230 chr2L 15906188 15906213 chr2L 15906273 15906302 4 88 1.0 3.5 2.2 1.2 114 chr2L 15906188 intron beat-Ib - chr2L 15906245 intron beat-Ib - chr2L 15906302 intron beat-Ib - chr2L_4_15905001 chr2L_15905001 RAL-799 231 chr2L 15956022 15956056 chr2L 15957524 15957558 hobo 9 1501 0.5 0.0 0.2 7.5 1536 chr2L 15956022 intron beat-Ib - chr2L 15956790 intron beat-Ib - chr2L 15957558 intron beat-Ib - chr2L_9_15955001 chr2L_15955001 RAL-799 232 chr2L 16008692 16008723 chr2L 16008770 16008801 4 78 1.0 0.5 0.8 2.2 109 chr2L 16008692 intron beat-Ic + chr2L 16008746 intron beat-Ic + chr2L 16008801 intron beat-Ic + chr2L_4_16005001 chr2L_16005001 RAL-799 233 chr2L 16027395 16027427 chr2L 16027471 16027503 6 76 1.0 0.5 0.8 3.3 108 chr2L 16027395 intron beat-Ic + chr2L 16027449 intron beat-Ic + chr2L 16027503 intron beat-Ic + chr2L_6_16025001 chr2L_16025001 RAL-799 234 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 11 145889 14.5 12.5 13.5 0.8 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-799 235 chr2L 16115521 16115547 chr2L 16115597 16115623 5 76 2.0 1.0 1.5 2.0 102 chr2L 16115521 intergenic not near genes chr2L 16115572 intergenic not near genes chr2L 16115623 intergenic not near genes chr2L_5_16115001 chr2L_16115001 RAL-799 236 chr2L 16141166 16141186 chr2L 16146373 16146393 copia 5 5207 2.5 1.0 1.8 1.8 5227 chr2L 16141166 intergenic not near genes chr2L 16143780 intergenic not near genes chr2L 16146393 intergenic not near genes chr2L_5_16140001 chr2L_16140001 RAL-799 237 chr2L 9084336 9084340 chr2L 16217660 16217660 15 7133321 14.0 12.5 13.2 1.1 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_15_12650001 chr2L_12650001 RAL-799 238 chr2L 16226181 16226214 chr2L 16226268 16226293 6 86 0.0 2.5 1.2 2.7 112 chr2L 16226181 intergenic not near genes chr2L 16226237 intergenic not near genes chr2L 16226293 intergenic not near genes chr2L_6_16225001 chr2L_16225001 RAL-799 239 chr2L 16272262 16272287 chr2L 16272339 16272364 7 77 1.0 1.5 1.2 3.2 102 chr2L 16272262 intron crp - chr2L 16272313 intron crp - chr2L 16272364 intron crp - chr2L_7_16270001 chr2L_16270001 RAL-799 240 chr2L 16280263 16280284 chr2L 16281434 16281455 1360 9 1171 4.5 5.5 5.0 1.5 1192 chr2L 16280263 intron crp - chr2L 16280859 intron crp - chr2L 16281455 intron crp - chr2L_9_16280001 chr2L_16280001 RAL-799 241 chr2L 16337862 16337884 chr2L 16337941 16337963 7 79 1.5 1.0 1.2 3.2 101 chr2L 16337862 5` UTR CG31817 - chr2L 16337912 intergenic CG31817 -,CG42266 - chr2L 16337963 intergenic CG42266 -,CG31817 - chr2L_7_16335001 chr2L_16335001 RAL-799 242 chr2L 16498154 16498173 chr2L 16498335 16498352 7 181 0.5 1.0 0.8 3.9 198 chr2L 16498154 intron Tpr2 + chr2L 16498253 intron Tpr2 + chr2L 16498352 intron Tpr2 + chr2L_7_16495001 chr2L_16495001 RAL-799 243 chr2L 16504997 16505015 chr2L 16505107 16505125 4 110 0.0 3.0 1.5 1.6 128 chr2L 16504997 intron Tpr2 + chr2L 16505061 intron Tpr2 + chr2L 16505125 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-799 244 chr2L 16796086 16796106 chr2L 16796183 16796207 8 100 0.5 0.5 0.5 5.3 121 chr2L 16796086 intergenic Ugt36Ba + chr2L 16796146 intergenic Ugt36Ba +,Ugt36Bb + chr2L 16796207 intergenic Ugt36Ba +,Ugt36Bb + chr2L_8_16795001 chr2L_16795001 RAL-799 245 chr2L 16958103 16958120 chr2L 16962891 16962907 Doc 5 4788 1.0 3.5 2.2 1.6 4804 chr2L 16958103 intergenic not near genes chr2L 16960505 intergenic not near genes chr2L 16962907 intergenic not near genes chr2L_5_16960001 chr2L_16960001 RAL-799 246 chr2L 17033917 17033940 chr2L 17034002 17034025 6 85 3.0 0.0 1.5 2.4 108 chr2L 17033917 intergenic not near genes chr2L 17033971 intergenic not near genes chr2L 17034025 intergenic not near genes chr2L_6_17030001 chr2L_17030001 RAL-799 247 chr2L 17050019 17050048 chr2L 17050106 17050135 7 87 1.0 0.5 0.8 3.9 116 chr2L 17050019 intergenic not near genes chr2L 17050077 intergenic not near genes chr2L 17050135 intergenic not near genes chr2L_7_17050001 chr2L_17050001 RAL-799 248 chr2L 17053279 17053296 chr2L 17053689 17053706 4 409 4.0 1.5 2.8 1.1 427 chr2L 17053279 intergenic not near genes chr2L 17053492 intergenic not near genes chr2L 17053706 intergenic not near genes chr2L_4_17050001 chr2L_17050001 RAL-799 249 chr2L 17098049 17098063 chr2L 17098125 17098134 6 74 1.5 5.0 3.2 1.4 85 chr2L 17098049 intergenic not near genes chr2L 17098092 intergenic not near genes chr2L 17098134 intergenic not near genes chr2L_6_17095001 chr2L_17095001 RAL-799 250 chr2L 17164545 17164581 chr2L 17165708 17165744 9 1163 2.5 1.0 1.8 3.2 1199 chr2L 17164545 intron,intron CG34106 +,beat-IIIa + chr2L 17165144 intron,intron CG34106 +,beat-IIIa + chr2L 17165744 intron,intron CG34106 +,beat-IIIa + chr2L_9_17165001 chr2L_17165001 RAL-799 251 chr2L 17167571 17167594 chr2L 17167812 17167835 pogo 4 241 0.5 0.5 0.5 2.7 264 chr2L 17167571 intron,intron CG34106 +,beat-IIIa + chr2L 17167703 intron,intron CG34106 +,beat-IIIa + chr2L 17167835 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-799 252 chr2L 17273195 17273225 chr2L 17277978 17278008 F-element 7 4782 1.5 3.0 2.2 2.2 4813 chr2L 17273195 intergenic not near genes chr2L 17275602 intergenic not near genes chr2L 17278008 intergenic not near genes chr2L_7_17275001 chr2L_17275001 RAL-799 253 chr2L 17360030 17360045 chr2L 17360208 17360223 4 178 2.0 0.0 1.0 2.0 193 chr2L 17360030 intergenic not near genes chr2L 17360126 intergenic not near genes chr2L 17360223 intergenic not near genes chr2L_4_17360001 chr2L_17360001 RAL-799 254 chr2L 17432013 17432046 chr2L 17432120 17432153 1360 8 107 0.0 0.0 0.0 8.0 140 chr2L 17432013 intron Dif - chr2L 17432083 intron Dif - chr2L 17432153 intron Dif - chr2L_8_17430001 chr2L_17430001 RAL-799 255 chr2L 17819923 17819955 chr2L 17825126 17825158 copia 8 5203 3.5 2.5 3.0 2.0 5235 chr2L 17819923 intron CadN2 - chr2L 17822540 intron CadN2 - chr2L 17825158 intron CadN2 - chr2L_8_17820001 chr2L_17820001 RAL-799 256 chr2L 17879997 17880030 chr2L 17880084 17880117 7 87 2.0 1.0 1.5 2.8 120 chr2L 17879997 intergenic not near genes chr2L 17880057 intergenic not near genes chr2L 17880117 intergenic not near genes chr2L_7_17880001 chr2L_17880001 RAL-799 257 chr2L 17891461 17891481 chr2L 17891538 17891559 5 78 2.5 1.0 1.8 1.8 98 chr2L 17891461 intergenic not near genes chr2L 17891510 intergenic not near genes chr2L 17891559 intergenic not near genes chr2L_5_17890001 chr2L_17890001 RAL-799 258 chr2L 17911968 17911980 chr2L 17914142 17914158 pogo 4 2177 4.5 3.0 3.8 0.8 2190 chr2L 17911968 intergenic not near genes chr2L 17913063 intergenic not near genes chr2L 17914158 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-799 259 chr2L 17951948 17951979 chr2L 17953414 17953446 hobo 9 1467 2.0 3.0 2.5 2.6 1498 chr2L 17951948 intergenic CR44398 -,CR44397 - chr2L 17952697 intergenic not near genes chr2L 17953446 intergenic not near genes chr2L_9_17950001 chr2L_17950001 RAL-799 260 chr2L 18051887 18051902 chr2L 18061034 18061049 roo 4 9146 3.5 3.5 3.5 0.9 9162 chr2L 18051887 intron rdo + chr2L 18056468 intron rdo + chr2L 18061049 intron rdo + chr2L_4_18055001 chr2L_18055001 RAL-799 261 chr2L 18111244 18111264 chr2L 18111335 18111355 4 91 3.0 3.5 3.2 1.0 111 chr2L 18111244 intergenic not near genes chr2L 18111300 intergenic not near genes chr2L 18111355 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-799 262 chr2L 18143468 18143494 chr2L 18143548 18143574 10 79 9.5 5.5 7.5 1.2 106 chr2L 18143468 intron Socs36E - chr2L 18143521 intron Socs36E - chr2L 18143574 intron Socs36E - chr2L_10_18140001 chr2L_18140001 RAL-799 263 chr2L 18230287 18230308 chr2L 18230371 18230392 4 81 3.5 3.0 3.2 1.0 105 chr2L 18230287 intron CG42750 - chr2L 18230340 intron CG42750 - chr2L 18230392 intron CG42750 - chr2L_4_18230001 chr2L_18230001 RAL-799 264 chr2L 18245521 18245546 chr2L 18245675 18245700 4 154 3.5 2.0 2.8 1.1 179 chr2L 18245521 intron CG42750 - chr2L 18245610 intron CG42750 - chr2L 18245700 intron CG42750 - chr2L_4_18245001 chr2L_18245001 RAL-799 265 chr2L 18301079 18301101 chr2L 18301174 18301188 9 94 6.5 5.5 6.0 1.3 109 chr2L 18301079 intergenic not near genes chr2L 18301134 intergenic not near genes chr2L 18301188 intergenic not near genes chr2L_9_18300001 chr2L_18300001 RAL-799 266 chr2L 18408028 18408055 chr2L 18412811 18412839 Doc 8 4784 0.5 1.5 1.0 4.0 4811 chr2L 18408028 intergenic not near genes chr2L 18410434 intergenic not near genes chr2L 18412839 intergenic not near genes chr2L_8_18410001 chr2L_18410001 RAL-799 267 chr2L 18571622 18571646 chr2L 18571705 18571727 4 82 0.5 3.0 1.8 1.4 105 chr2L 18571622 intron Pde11 - chr2L 18571674 intron Pde11 - chr2L 18571727 intron Pde11 - chr2L_4_18570001 chr2L_18570001 RAL-799 268 chr2L 16217660 16217660 chr2L 18622718 18622719 15 2405058 10.0 19.0 14.5 1.0 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_15_17420001 chr2L_17420001 RAL-799 269 chr2L 18626889 18626914 chr2L 18627063 18627087 4 173 4.5 1.5 3.0 1.0 198 chr2L 18626889 intron MESR3 + chr2L 18626988 intron MESR3 + chr2L 18627087 intron MESR3 + chr2L_4_18625001 chr2L_18625001 RAL-799 270 chr2L 18717066 18717081 chr2L 18717182 18717197 8 116 4.5 2.0 3.2 1.9 131 chr2L 18717066 intron CG10348 - chr2L 18717132 intron CG10348 - chr2L 18717197 intron CG10348 - chr2L_8_18715001 chr2L_18715001 RAL-799 271 chr2L 18811409 18811433 chr2L 18811491 18811515 4 82 0.5 0.0 0.2 3.3 106 chr2L 18811409 intergenic CG10570 -,CG42502 - chr2L 18811462 intergenic CG10570 -,CG42502 - chr2L 18811515 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-799 272 chr2L 18812563 18812590 chr2L 18812825 18812853 5 262 1.0 2.5 1.8 1.8 290 chr2L 18812563 intergenic CG17325 +,CG42305 + chr2L 18812708 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812853 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-799 273 chr2L 18883853 18883884 chr2L 18883935 18883966 6 82 1.5 1.0 1.2 2.7 113 chr2L 18883853 intergenic not near genes chr2L 18883910 intergenic not near genes chr2L 18883966 intergenic not near genes chr2L_6_18880001 chr2L_18880001 RAL-799 274 chr2L 18898397 18898428 chr2L 18898479 18898510 6 82 2.0 1.5 1.8 2.1 113 chr2L 18898397 intergenic not near genes chr2L 18898454 intergenic not near genes chr2L 18898510 intergenic not near genes chr2L_6_18895001 chr2L_18895001 RAL-799 275 chr2L 18997741 18997762 chr2L 18998006 18998018 6 263 1.5 3.5 2.5 1.7 277 chr2L 18997741 intron CG31792 + chr2L 18997880 intron CG31792 + chr2L 18998018 exon CG31792 + chr2L_6_18995001 chr2L_18995001 RAL-799 276 chr2L 19070280 19070295 chr2L 19070366 19070388 7 92 4.0 3.0 3.5 1.6 108 chr2L 19070280 intergenic CG10702 - chr2L 19070334 intergenic CG10702 - chr2L 19070388 intergenic not near genes chr2L_7_19070001 chr2L_19070001 RAL-799 277 chr2L 19147379 19147402 chr2L 19154414 19154437 297 8 7035 1.0 1.5 1.2 3.6 7058 chr2L 19147379 intron brat + chr2L 19150908 intron brat + chr2L 19154437 intron brat + chr2L_8_19150001 chr2L_19150001 RAL-799 278 chr2L 19246839 19246850 chr2L 19246919 19246930 5 80 1.5 2.5 2.0 1.7 91 chr2L 19246839 intergenic not near genes chr2L 19246884 intergenic not near genes chr2L 19246930 intergenic not near genes chr2L_5_19245001 chr2L_19245001 RAL-799 279 chr2L 19357548 19357567 chr2L 19357638 19357657 8 90 4.5 5.0 4.8 1.4 109 chr2L 19357548 intron dnt - chr2L 19357602 intron dnt - chr2L 19357657 intron dnt - chr2L_8_19355001 chr2L_19355001 RAL-799 280 chr2L 19361876 19361909 chr2L 19361963 19361995 14 86 1.0 3.0 2.0 4.7 119 chr2L 19361876 intron dnt - chr2L 19361936 intron dnt - chr2L 19361995 intron dnt - chr2L_14_19360001 chr2L_19360001 RAL-799 281 chr2L 19374494 19374514 chr2L 19374602 19374623 4 109 1.5 1.0 1.2 1.8 129 chr2L 19374494 intergenic not near genes chr2L 19374558 intergenic not near genes chr2L 19374623 intergenic not near genes chr2L_4_19370001 chr2L_19370001 RAL-799 282 chr2L 19377075 19377085 chr2L 19377148 19377162 5 76 4.0 1.0 2.5 1.4 87 chr2L 19377075 intergenic not near genes chr2L 19377118 intergenic not near genes chr2L 19377162 intergenic not near genes chr2L_5_19375001 chr2L_19375001 RAL-799 283 chr2L 19377093 19377106 chr2L 19377147 19377183 5 72 1.5 0.5 1.0 2.5 90 chr2L 19377093 intergenic not near genes chr2L 19377138 intergenic not near genes chr2L 19377183 intergenic not near genes chr2L_5_19375001 chr2L_19375001 RAL-799 284 chr2L 19378350 19378364 chr2L 19378432 19378447 4 83 2.0 5.5 3.8 0.8 97 chr2L 19378350 intergenic not near genes chr2L 19378398 intergenic not near genes chr2L 19378447 intergenic not near genes chr2L_4_19375001 chr2L_19375001 RAL-799 285 chr2L 19544590 19544619 chr2L 19544667 19544696 4 77 6.0 2.5 4.2 0.8 106 chr2L 19544590 exon ref(2)P + chr2L 19544643 exon ref(2)P + chr2L 19544696 exon ref(2)P + chr2L_4_19540001 chr2L_19540001 RAL-799 286 chr2L 19562552 19562562 chr2L 19562631 19562642 7 80 0.0 4.5 2.2 2.2 90 chr2L 19562552 intron Tep5 + chr2L 19562597 intron Tep5 + chr2L 19562642 exon Tep5 + chr2L_7_19560001 chr2L_19560001 RAL-799 287 chr2L 19620099 19620122 chr2L 19621088 19621111 jockey 7 988 7.0 0.5 3.8 1.5 1012 chr2L 19620099 intron Lar + chr2L 19620605 intron Lar + chr2L 19621111 intron Lar + chr2L_7_19620001 chr2L_19620001 RAL-799 288 chr2L 19652584 19652595 chr2L 19674020 19674031 opus 5 21436 3.0 2.0 2.5 1.4 21447 chr2L 19652584 intron Lar + chr2L 19663308 intron Lar + chr2L 19674031 intron Lar + chr2L_5_19660001 chr2L_19660001 RAL-799 289 chr2L 19703538 19703567 chr2L 19712674 19712703 roo 6 9136 3.5 1.0 2.2 1.9 9165 chr2L 19703538 intron Lar + chr2L 19708120 intron Lar + chr2L 19712703 intron Lar + chr2L_6_19705001 chr2L_19705001 RAL-799 290 chr2L 19737356 19737383 chr2L 19740824 19740852 1360 14 3468 2.5 3.5 3.0 3.5 3496 chr2L 19737356 intergenic Nf-YB + chr2L 19739104 intergenic not near genes chr2L 19740852 intergenic not near genes chr2L_14_19735001 chr2L_19735001 RAL-799 291 chr2L 19762818 19762839 chr2L 19763060 19763081 pogo 4 242 2.5 3.0 2.8 1.1 263 chr2L 19762818 intron fbp - chr2L 19762950 intron fbp - chr2L 19763081 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-799 292 chr2L 19837287 19837307 chr2L 19837367 19837386 5 78 4.5 2.5 3.5 1.1 99 chr2L 19837287 intron sick + chr2L 19837336 intron sick + chr2L 19837386 intron sick + chr2L_5_19835001 chr2L_19835001 RAL-799 293 chr2L 20005876 20005903 chr2L 20010952 20010978 flea 7 5076 0.5 3.5 2.0 2.3 5102 chr2L 20005876 intron CG43861 - chr2L 20008427 intron CG43861 - chr2L 20010978 intron CG43861 - chr2L_7_20005001 chr2L_20005001 RAL-799 294 chr2L 20022092 20022103 chr2L 20022203 20022216 4 112 3.0 0.0 1.5 1.6 124 chr2L 20022092 intergenic not near genes chr2L 20022154 intergenic not near genes chr2L 20022216 intergenic not near genes chr2L_4_20020001 chr2L_20020001 RAL-799 295 chr2L 20057059 20057077 chr2L 20057130 20057154 4 76 1.5 3.0 2.2 1.2 95 chr2L 20057059 intergenic not near genes chr2L 20057106 intergenic not near genes chr2L 20057154 intergenic not near genes chr2L_4_20055001 chr2L_20055001 RAL-799 296 chr2L 20254554 20254582 chr2L 20254844 20254871 5 289 2.0 1.0 1.5 2.0 317 chr2L 20254554 intergenic CR40465 - chr2L 20254712 intergenic CR40465 - chr2L 20254871 intergenic CR40465 - chr2L_5_20250001 chr2L_20250001 RAL-799 297 chr2L 20272112 20272143 chr2L 20282823 20282854 copia 7 10710 2.5 5.5 4.0 1.4 10742 chr2L 20272112 intergenic not near genes chr2L 20277483 intergenic not near genes chr2L 20282854 intergenic not near genes chr2L_7_20275001 chr2L_20275001 RAL-799 298 chr2L 20283043 20283066 chr2L 20284175 20284198 8 1132 2.5 3.0 2.8 2.1 1155 chr2L 20283043 intergenic not near genes chr2L 20283620 intergenic not near genes chr2L 20284198 intergenic not near genes chr2L_8_20280001 chr2L_20280001 RAL-799 299 chr2L 20303164 20303176 chr2L 20310632 20310644 blood 4 7468 0.5 2.0 1.2 1.8 7480 chr2L 20303164 intergenic not near genes chr2L 20306904 intergenic not near genes chr2L 20310644 intergenic not near genes chr2L_4_20305001 chr2L_20305001 RAL-799 300 chr2L 20310888 20310919 chr2L 20310967 20310998 4 79 1.0 5.0 3.0 1.0 110 chr2L 20310888 intergenic spir + chr2L 20310943 intergenic spir + chr2L 20310998 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-799 301 chr2L 20498688 20498708 chr2L 20498787 20498807 4 99 2.5 3.5 3.0 1.0 119 chr2L 20498688 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498807 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-799 302 chr2L 20568661 20568683 chr2L 20569051 20569071 X-element 6 390 1.0 2.0 1.5 2.4 410 chr2L 20568661 intron CR45347 + chr2L 20568866 intron CR45347 + chr2L 20569071 intron CR45347 + chr2L_6_20565001 chr2L_20565001 RAL-799 303 chr2L 20576218 20576247 chr2L 20583686 20583715 blood 9 7468 5.0 3.0 4.0 1.8 7497 chr2L 20576218 intergenic CR45347 + chr2L 20579966 intergenic not near genes chr2L 20583715 3` UTR CR44909 - chr2L_9_20575001 chr2L_20575001 RAL-799 304 chr2L 20597094 20597114 chr2L 20597171 20597191 6 77 3.0 5.5 4.2 1.2 97 chr2L 20597094 intron CR44909 - chr2L 20597142 intron CR44909 - chr2L 20597191 intron CR44909 - chr2L_6_20595001 chr2L_20595001 RAL-799 305 chr2L 20611249 20611264 chr2L 20611327 20611351 6 87 0.0 3.5 1.8 2.1 102 chr2L 20611249 intron CR44909 - chr2L 20611300 intron CR44909 - chr2L 20611351 intron CR44909 - chr2L_6_20610001 chr2L_20610001 RAL-799 306 chr2L 20722357 20722386 chr2L 20722553 20722582 8 195 3.0 4.5 3.8 1.7 225 chr2L 20722357 5` UTR CR45306 + chr2L 20722470 intergenic CR45306 + chr2L 20722582 intergenic CR45306 + chr2L_8_20720001 chr2L_20720001 RAL-799 307 chr2L 20826523 20826539 chr2L 20826603 20826618 6 80 3.0 7.0 5.0 1.0 95 chr2L 20826523 intron CG9331 + chr2L 20826570 intron CG9331 + chr2L 20826618 intron CG9331 + chr2L_6_20825001 chr2L_20825001 RAL-799 308 chr2L 20835809 20835834 chr2L 20836526 20836551 Quasimodo 6 716 0.5 1.5 1.0 3.0 742 chr2L 20835809 5` UTR Oseg5 - chr2L 20836180 intergenic Oseg5 -,Spn38F - chr2L 20836551 intergenic Spn38F - chr2L_6_20835001 chr2L_20835001 RAL-799 309 chr2L 20976650 20976670 chr2L 20981465 20981484 X-element 6 4815 1.5 3.0 2.2 1.9 4834 chr2L 20976650 intron CG42238 - chr2L 20979067 intron CG42238 - chr2L 20981484 intron CG42238 - chr2L_6_20975001 chr2L_20975001 RAL-799 310 chr2L 20984746 20984765 chr2L 20984830 20984857 6 90 1.5 2.0 1.8 2.1 111 chr2L 20984746 intron CG42238 - chr2L 20984802 intron CG42238 - chr2L 20984857 intron CG42238 - chr2L_6_20980001 chr2L_20980001 RAL-799 311 chr2L 21020282 21020307 chr2L 21023959 21023983 NOF 4 3677 1.0 3.5 2.2 1.2 3701 chr2L 21020282 intron CG42238 - chr2L 21022132 intron CG42238 - chr2L 21023983 intron CG42238 - chr2L_4_21020001 chr2L_21020001 RAL-799 312 chr2L 21041134 21041167 chr2L 21049395 21049428 Tirant 8 8261 2.0 2.0 2.0 2.7 8294 chr2L 21041134 intron CG42238 - chr2L 21045281 intron CG42238 - chr2L 21049428 intron CG42238 - chr2L_8_21045001 chr2L_21045001 RAL-799 313 chr2L 21097455 21097476 chr2L 21097548 21097569 10 93 3.0 3.5 3.2 2.4 114 chr2L 21097455 intron,intron CG12050 -,CG34136 + chr2L 21097512 intron,intron CG12050 -,CG34136 + chr2L 21097569 intron,intron CG12050 -,CG34136 + chr2L_10_21095001 chr2L_21095001 RAL-799 314 chr2L 21110649 21110679 chr2L 21110734 21110764 6 85 1.5 1.5 1.5 2.4 115 chr2L 21110649 intron Nhe2 + chr2L 21110706 intron Nhe2 + chr2L 21110764 intron Nhe2 + chr2L_6_21110001 chr2L_21110001 RAL-799 315 chr2L 21194776 21194804 chr2L 21194941 21194971 7 167 1.5 3.5 2.5 2.0 195 chr2L 21194776 intron Ret - chr2L 21194874 intron Ret - chr2L 21194971 intron Ret - chr2L_7_21190001 chr2L_21190001 RAL-799 316 chr2L 21286604 21286635 chr2L 21286682 21286713 4 78 1.5 0.5 1.0 2.0 109 chr2L 21286604 exon Mio - chr2L 21286658 intron Mio - chr2L 21286713 intron Mio - chr2L_4_21285001 chr2L_21285001 RAL-799 317 chr2L 21347550 21347583 chr2L 21355021 21355054 blood 7 7471 2.5 1.5 2.0 2.3 7504 chr2L 21347550 intron Tsp39D + chr2L 21351302 intron Tsp39D + chr2L 21355054 intron Tsp39D + chr2L_7_21350001 chr2L_21350001 RAL-799 318 chr2L 21394379 21394399 chr2L 21394457 21394478 5 79 2.5 2.0 2.2 1.6 99 chr2L 21394379 intergenic not near genes chr2L 21394428 intergenic not near genes chr2L 21394478 intergenic not near genes chr2L_5_21390001 chr2L_21390001 RAL-799 319 chr2L 21597029 21597053 chr2L 21604772 21604797 roo 5 7744 5.0 2.5 3.8 1.0 7768 chr2L 21597029 intergenic not near genes chr2L 21600913 intergenic not near genes chr2L 21604797 intergenic not near genes chr2L_5_21600001 chr2L_21600001 RAL-799 320 chr2L 21754666 21754689 chr2L 21754747 21754770 5 81 1.0 1.5 1.2 2.3 104 chr2L 21754666 intron step - chr2L 21754718 intron step - chr2L 21754770 intron step - chr2L_5_21750001 chr2L_21750001 RAL-799 321 chr2L 21806229 21806255 chr2L 21806332 21806358 5 103 3.5 1.5 2.5 1.4 129 chr2L 21806229 intergenic not near genes chr2L 21806294 intergenic not near genes chr2L 21806358 intergenic not near genes chr2L_5_21805001 chr2L_21805001 RAL-799 322 chr2L 21866320 21866324 chr2L 21866397 21866402 4 78 2.5 3.5 3.0 1.0 82 chr2L 21866320 intron CR44917 + chr2L 21866361 intron CR44917 + chr2L 21866402 intron CR44917 + chr2L_4_21865001 chr2L_21865001 RAL-799 323 chr2L 21981683 21981716 chr2L 21990847 21990880 roo 7 9164 1.0 2.5 1.8 2.5 9197 chr2L 21981683 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990880 exon CG2528 - chr2L_7_21985001 chr2L_21985001 RAL-799 324 chr2L 22005769 22005785 chr2L 22005859 22005859 5 85 3.0 0.0 1.5 2.0 90 chr2L 22005769 intergenic not near genes chr2L 22005814 intergenic not near genes chr2L 22005859 intergenic not near genes chr2L_5_22005001 chr2L_22005001 RAL-799 325 chr2L 22130218 22130248 chr2L 22130324 22130354 6 106 2.0 1.0 1.5 2.4 136 chr2L 22130218 intergenic CycK - chr2L 22130286 intergenic CycK - chr2L 22130354 intergenic CycK - chr2L_6_22130001 chr2L_22130001 RAL-799 326 chr2L 22212153 22212163 chr2L 22212700 22212710 5 547 1.0 2.5 1.8 1.8 557 chr2L 22212153 intron Ir40a - chr2L 22212432 intron Ir40a - chr2L 22212710 intron Ir40a - chr2L_5_22210001 chr2L_22210001 RAL-799 327 chr2L 22545986 22546011 chr2L 22546077 22546107 9 95 3.5 2.5 3.0 2.2 121 chr2L 22545986 intron CG17490 + chr2L 22546046 intron CG17490 + chr2L 22546107 intron CG17490 + chr2L_9_22545001 chr2L_22545001 RAL-799 328 chr2L 22548925 22548939 chr2L 22550150 22550164 1360 8 1225 0.0 4.5 2.2 2.5 1239 chr2L 22548925 intergenic CG17490 + chr2L 22549544 intergenic not near genes chr2L 22550164 intergenic CG17493 + chr2L_8_22545001 chr2L_22545001 RAL-799 329 chr2L 22679800 22679827 chr2L 22684572 22684599 F-element 7 4771 1.5 3.5 2.5 2.0 4799 chr2L 22679800 intron CG40006 - chr2L 22682200 intron CG40006 - chr2L 22684599 intron CG40006 - chr2L_7_22680001 chr2L_22680001 RAL-799 330 chr2L 22693928 22693951 chr2L 22694008 22694038 8 86 1.5 3.0 2.2 2.5 110 chr2L 22693928 intron CG40006 - chr2L 22693983 intron CG40006 - chr2L 22694038 intron CG40006 - chr2L_8_22690001 chr2L_22690001 RAL-799 331 chr2L 22776421 22776451 chr2L 22778210 22778240 S-element 5 1789 0.0 1.5 0.8 2.8 1819 chr2L 22776421 intergenic not near genes chr2L 22777330 intergenic not near genes chr2L 22778240 intergenic not near genes chr2L_5_22775001 chr2L_22775001 RAL-799 332 chr2L 23181403 23181423 chr2L 23181512 23181532 7 109 3.0 3.0 3.0 1.8 129 chr2L 23181403 intergenic not near genes chr2L 23181468 intergenic not near genes chr2L 23181532 intergenic not near genes chr2L_7_23180001 chr2L_23180001 RAL-799 333 chr2R 3293748 3293766 chr2R 3293826 3293844 4 78 1.5 0.0 0.8 2.2 96 chr2R 3293748 intergenic not near genes chr2R 3293796 intergenic not near genes chr2R 3293844 intergenic not near genes chr2R_4_3290001 chr2R_3290001 RAL-799 334 chr2R 4265301 4265314 chr2R 4265384 4265397 4 83 17.0 19.0 18.0 0.2 96 chr2R 4265301 intergenic not near genes chr2R 4265349 intergenic not near genes chr2R 4265397 intergenic not near genes chr2R_4_4265001 chr2R_4265001 RAL-799 335 chr2R 4580192 4580225 chr2R 4580819 4580852 9 626 2.0 2.0 2.0 3.0 660 chr2R 4580192 intergenic not near genes chr2R 4580522 intergenic not near genes chr2R 4580852 intergenic not near genes chr2R_9_4580001 chr2R_4580001 RAL-799 336 chr2R 4604553 4604565 chr2R 4604632 4604643 4 78 2.0 1.5 1.8 1.4 90 chr2R 4604553 intron p120ctn + chr2R 4604598 intron p120ctn + chr2R 4604643 intron p120ctn + chr2R_4_4600001 chr2R_4600001 RAL-799 337 chr2R 4622951 4622988 chr2R 4624110 4624147 1360 5 1157 2.0 3.0 2.5 1.4 1196 chr2R 4622951 intergenic CR44101 - chr2R 4623549 intergenic not near genes chr2R 4624147 intergenic not near genes chr2R_5_4620001 chr2R_4620001 RAL-799 338 chr2R 4656782 4656812 chr2R 4656992 4657022 14 208 26.5 32.5 29.5 0.5 240 chr2R 4656782 intergenic not near genes chr2R 4656902 intergenic not near genes chr2R 4657022 intergenic not near genes chr2R_14_4655001 chr2R_4655001 RAL-799 339 chr2R 4750346 4750374 chr2R 4751503 4751528 1360 5 1156 2.5 1.5 2.0 1.7 1182 chr2R 4750346 intron conu + chr2R 4750937 intron conu + chr2R 4751528 intron conu + chr2R_5_4750001 chr2R_4750001 RAL-799 340 chr2R 4900666 4900682 chr2R 4900772 4900788 5 106 0.5 1.0 0.8 2.8 122 chr2R 4900666 intron CG44102 - chr2R 4900727 intron CG44102 - chr2R 4900788 intron CG44102 - chr2R_5_4900001 chr2R_4900001 RAL-799 341 chr2R 5009806 5009830 chr2R 5009892 5009916 6 86 1.5 1.5 1.5 2.4 110 chr2R 5009806 intron Ir41a + chr2R 5009861 intron Ir41a + chr2R 5009916 intron Ir41a + chr2R_6_5005001 chr2R_5005001 RAL-799 342 chr2R 5019276 5019312 chr2R 5019362 5019398 6 86 2.5 0.0 1.2 2.7 122 chr2R 5019276 intron Ir41a + chr2R 5019337 intron Ir41a + chr2R 5019398 intron Ir41a + chr2R_6_5015001 chr2R_5015001 RAL-799 343 chr2R 5125250 5125264 chr2R 5125568 5125582 4 318 2.0 1.0 1.5 1.6 332 chr2R 5125250 intron gus - chr2R 5125416 intron gus - chr2R 5125582 intron gus - chr2R_4_5125001 chr2R_5125001 RAL-799 344 chr2R 5179959 5179980 chr2R 5180092 5180113 5 133 1.0 1.5 1.2 2.3 154 chr2R 5179959 intron Nipped-A - chr2R 5180036 intron Nipped-A - chr2R 5180113 intron Nipped-A - chr2R_5_5180001 chr2R_5180001 RAL-799 345 chr2R 5460523 5460538 chr2R 5460626 5460640 6 102 6.5 3.0 4.8 1.0 117 chr2R 5460523 intergenic not near genes chr2R 5460582 intergenic not near genes chr2R 5460640 intergenic not near genes chr2R_6_5460001 chr2R_5460001 RAL-799 346 chr2R 5460542 5460556 chr2R 5460624 5460634 4 91 3.5 3.0 3.2 1.0 92 chr2R 5460542 intergenic not near genes chr2R 5460588 intergenic not near genes chr2R 5460634 intergenic not near genes chr2R_4_5460001 chr2R_5460001 RAL-799 347 chr2R 5472368 5472392 chr2R 5472463 5472487 5 94 3.5 2.0 2.8 1.3 119 chr2R 5472368 intron CG30440 - chr2R 5472428 intron CG30440 - chr2R 5472487 intron CG30440 - chr2R_5_5470001 chr2R_5470001 RAL-799 348 chr2R 5476352 5476381 chr2R 5476896 5476924 11 543 2.5 2.5 2.5 3.1 572 chr2R 5476352 intron CG30440 - chr2R 5476638 intron CG30440 - chr2R 5476924 intron CG30440 - chr2R_11_5475001 chr2R_5475001 RAL-799 349 chr2R 5611803 5611832 chr2R 5611907 5611935 6 102 2.0 5.5 3.8 1.2 132 chr2R 5611803 intergenic CG17508 + chr2R 5611869 intergenic CG17508 + chr2R 5611935 intergenic CG17508 + chr2R_6_5610001 chr2R_5610001 RAL-799 350 chr2R 5664284 5664314 chr2R 5664361 5664393 10 80 1.5 2.5 2.0 3.3 109 chr2R 5664284 5` UTR CR45472 + chr2R 5664338 intron CR45472 + chr2R 5664393 intron CR45472 + chr2R_10_5660001 chr2R_5660001 RAL-799 351 chr2R 5869275 5869301 chr2R 5874351 5874377 flea 6 5076 3.5 2.5 3.0 1.5 5102 chr2R 5869275 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874377 intergenic not near genes chr2R_6_5870001 chr2R_5870001 RAL-799 352 chr2R 5917770 5917794 chr2R 5917849 5917873 8 79 3.0 2.0 2.5 2.3 103 chr2R 5917770 intron CG43366 + chr2R 5917822 intron CG43366 + chr2R 5917873 intron CG43366 + chr2R_8_5915001 chr2R_5915001 RAL-799 353 chr2R 5932798 5932828 chr2R 5932874 5932907 9 79 2.5 2.5 2.5 2.6 109 chr2R 5932798 intergenic not near genes chr2R 5932852 intergenic not near genes chr2R 5932907 intergenic not near genes chr2R_9_5930001 chr2R_5930001 RAL-799 354 chr2R 5951184 5951207 chr2R 5951273 5951296 9 89 2.5 2.5 2.5 2.6 112 chr2R 5951184 intergenic not near genes chr2R 5951240 intergenic not near genes chr2R 5951296 intergenic not near genes chr2R_9_5950001 chr2R_5950001 RAL-799 355 chr2R 6096723 6096749 chr2R 6101917 6101945 BS 10 5196 3.5 4.0 3.8 2.1 5222 chr2R 6096723 intron EcR - chr2R 6099334 intron EcR - chr2R 6101945 intron EcR - chr2R_10_6095001 chr2R_6095001 RAL-799 356 chr2R 6135583 6135619 chr2R 6135678 6135714 6 94 3.5 2.5 3.0 1.5 131 chr2R 6135583 intron EcR - chr2R 6135648 intron EcR - chr2R 6135714 intron EcR - chr2R_6_6135001 chr2R_6135001 RAL-799 357 chr2R 6546733 6546746 chr2R 6546822 6546846 4 98 1.5 1.5 1.5 1.6 113 chr2R 6546733 intron jing + chr2R 6546790 intron jing + chr2R 6546846 intron jing + chr2R_4_6545001 chr2R_6545001 RAL-799 358 chr2R 6633206 6633231 chr2R 6633283 6633308 4 77 0.0 2.5 1.2 1.8 102 chr2R 6633206 intergenic Vha16-1 -,Trap1 - chr2R 6633257 intergenic Vha16-1 -,Trap1 - chr2R 6633308 intergenic Vha16-1 -,Trap1 - chr2R_4_6630001 chr2R_6630001 RAL-799 359 chr2R 6699590 6699616 chr2R 6699675 6699699 4 84 2.0 1.5 1.8 1.4 109 chr2R 6699590 intergenic Rab2 + chr2R 6699644 intergenic Rab2 + chr2R 6699699 intergenic Rab2 + chr2R_4_6695001 chr2R_6695001 RAL-799 360 chr2R 6738848 6738877 chr2R 6738930 6738959 10 82 3.0 3.0 3.0 2.5 111 chr2R 6738848 intron l(2)01289 - chr2R 6738904 intron l(2)01289 - chr2R 6738959 intron l(2)01289 - chr2R_10_6735001 chr2R_6735001 RAL-799 361 chr2R 6887532 6887558 chr2R 6887621 6887647 5 89 3.5 2.0 2.8 1.3 115 chr2R 6887532 intron Spn42De + chr2R 6887590 intron Spn42De + chr2R 6887647 intron Spn42De + chr2R_5_6885001 chr2R_6885001 RAL-799 362 chr2R 6952164 6952181 chr2R 6959744 6959761 opus 4 7580 1.5 1.0 1.2 1.8 7597 chr2R 6952164 intron,intron mim -,CheB42c - chr2R 6955962 intron,intron mim -,CheB42c - chr2R 6959761 intron,intron mim -,CheB42c - chr2R_4_6955001 chr2R_6955001 RAL-799 363 chr2R 6964283 6964314 chr2R 6964360 6964391 4 77 1.0 1.0 1.0 2.0 108 chr2R 6964283 intron,intron mim -,CheB42c - chr2R 6964337 intron,intron mim -,CheB42c - chr2R 6964391 intron,intron mim -,CheB42c - chr2R_4_6960001 chr2R_6960001 RAL-799 364 chr2R 6978813 6978836 chr2R 6978955 6978978 5 141 1.5 1.5 1.5 2.0 165 chr2R 6978813 intron vimar - chr2R 6978896 intron vimar - chr2R 6978978 intron vimar - chr2R_5_6975001 chr2R_6975001 RAL-799 365 chr2R 7067594 7067620 chr2R 7067678 7067704 9 84 1.5 1.5 1.5 3.6 110 chr2R 7067594 intergenic not near genes chr2R 7067649 intergenic not near genes chr2R 7067704 intergenic not near genes chr2R_9_7065001 chr2R_7065001 RAL-799 366 chr2R 7091218 7091244 chr2R 7091300 7091326 5 82 0.0 2.0 1.0 2.5 108 chr2R 7091218 intron esn + chr2R 7091272 intron esn + chr2R 7091326 intron esn + chr2R_5_7090001 chr2R_7090001 RAL-799 367 chr2R 7101613 7101642 chr2R 7101708 7101732 8 94 2.0 0.5 1.2 3.6 119 chr2R 7101613 intron esn + chr2R 7101672 intron esn + chr2R 7101732 intron esn + chr2R_8_7100001 chr2R_7100001 RAL-799 368 chr2R 7139947 7139956 chr2R 7141423 7141448 hopper2 6 1489 3.0 3.0 3.0 1.5 1501 chr2R 7139947 intergenic not near genes chr2R 7140698 intergenic not near genes chr2R 7141448 intergenic not near genes chr2R_6_7140001 chr2R_7140001 RAL-799 369 chr2R 7196572 7196596 chr2R 7201347 7201371 F-element 5 4775 1.5 3.0 2.2 1.6 4799 chr2R 7196572 intron pk + chr2R 7198972 intron pk + chr2R 7201371 intron pk + chr2R_5_7195001 chr2R_7195001 RAL-799 370 chr2R 7235817 7235841 chr2R 7240909 7240933 jockey 5 5091 4.5 1.5 3.0 1.2 5116 chr2R 7235817 intergenic not near genes chr2R 7238375 intergenic not near genes chr2R 7240933 intergenic not near genes chr2R_5_7235001 chr2R_7235001 RAL-799 371 chr2R 7418139 7418159 chr2R 7418217 7418238 8 79 2.5 1.0 1.8 2.9 99 chr2R 7418139 intergenic not near genes chr2R 7418188 intergenic not near genes chr2R 7418238 intergenic not near genes chr2R_8_7415001 chr2R_7415001 RAL-799 372 chr2R 7450197 7450219 chr2R 7450287 7450305 6 86 3.5 2.5 3.0 1.5 108 chr2R 7450197 intron fa2h - chr2R 7450251 intron fa2h - chr2R 7450305 intron fa2h - chr2R_6_7450001 chr2R_7450001 RAL-799 373 chr2R 7623811 7623841 chr2R 7624631 7624661 9 825 33.0 21.0 27.0 0.3 850 chr2R 7623811 intron CG43340 + chr2R 7624236 intron CG43340 + chr2R 7624661 intron CG43340 + chr2R_9_7620001 chr2R_7620001 RAL-799 374 chr2R 7760285 7760303 chr2R 7760422 7760427 4 132 2.0 2.5 2.2 1.2 142 chr2R 7760285 intron,intron CG30497 -,CG45093 - chr2R 7760356 intron,intron CG30497 -,CG45093 - chr2R 7760427 intron,intron CG30497 -,CG45093 - chr2R_4_7760001 chr2R_7760001 RAL-799 375 chr2R 7769754 7769771 chr2R 7769831 7769848 4 77 1.5 3.5 2.5 1.1 94 chr2R 7769754 intron,intron CG30497 -,CG45093 - chr2R 7769801 intron,intron CG30497 -,CG45093 - chr2R 7769848 intron,intron CG30497 -,CG45093 - chr2R_4_7765001 chr2R_7765001 RAL-799 376 chr2R 7815677 7815703 chr2R 7822146 7822172 Burdock 4 6468 0.5 2.0 1.2 1.8 6495 chr2R 7815677 intergenic CG1882 + chr2R 7818924 intergenic not near genes chr2R 7822172 3` UTR cathD - chr2R_4_7815001 chr2R_7815001 RAL-799 377 chr2R 7869191 7869216 chr2R 7873977 7874002 Doc 6 4785 3.0 1.0 2.0 2.0 4811 chr2R 7869191 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874002 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-799 378 chr2R 8015659 8015683 chr2R 8017682 8017706 10 2022 1.5 5.0 3.2 2.4 2047 chr2R 8015659 intergenic mir-4981 + chr2R 8016682 intergenic not near genes chr2R 8017706 intergenic not near genes chr2R_10_8015001 chr2R_8015001 RAL-799 379 chr2R 8089254 8089286 chr2R 8089340 8089372 9 86 2.0 2.0 2.0 3.0 118 chr2R 8089254 3` UTR sut2 + chr2R 8089313 intergenic sut2 +,sut3 + chr2R 8089372 intergenic sut2 +,sut3 + chr2R_9_8085001 chr2R_8085001 RAL-799 380 chr2R 8160936 8160950 chr2R 8161026 8161039 1360 6 89 4.5 8.5 6.5 0.8 103 chr2R 8160936 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161039 intron CG8708 - chr2R_6_8160001 chr2R_8160001 RAL-799 381 chr2R 8277642 8277665 chr2R 8277732 8277753 9 93 5.5 5.0 5.2 1.5 111 chr2R 8277642 5` UTR CR44280 + chr2R 8277698 5` UTR CR44280 + chr2R 8277753 5` UTR CR44280 + chr2R_9_8275001 chr2R_8275001 RAL-799 382 chr2R 8308700 8308717 chr2R 8308786 8308802 5 86 1.0 4.5 2.8 1.3 102 chr2R 8308700 intergenic not near genes chr2R 8308751 intergenic not near genes chr2R 8308802 intergenic not near genes chr2R_5_8305001 chr2R_8305001 RAL-799 383 chr2R 8330869 8330873 chr2R 8331355 8331359 roo 4 486 6.5 2.5 4.5 0.7 490 chr2R 8330869 intron pdm3 + chr2R 8331114 intron pdm3 + chr2R 8331359 intron pdm3 + chr2R_4_8330001 chr2R_8330001 RAL-799 384 chr2R 8345273 8345297 chr2R 8345351 8345363 9 74 2.0 2.0 2.0 3.0 90 chr2R 8345273 intron pdm3 + chr2R 8345318 intron pdm3 + chr2R 8345363 intron pdm3 + chr2R_9_8345001 chr2R_8345001 RAL-799 385 chr2R 8379784 8379811 chr2R 8379880 8379888 13 94 4.5 2.5 3.5 2.9 104 chr2R 8379784 intron pdm3 + chr2R 8379836 intron pdm3 + chr2R 8379888 intron pdm3 + chr2R_13_8375001 chr2R_8375001 RAL-799 386 chr2R 8398213 8398238 chr2R 8402991 8403019 Doc 7 4778 2.5 4.0 3.2 1.7 4806 chr2R 8398213 intron CG2121 - chr2R 8400616 intron CG2121 - chr2R 8403019 intron CG2121 - chr2R_7_8400001 chr2R_8400001 RAL-799 387 chr2R 8408831 8408865 chr2R 8408959 8408993 8 124 4.0 3.5 3.8 1.7 162 chr2R 8408831 intron CG2121 - chr2R 8408912 intron CG2121 - chr2R 8408993 intron CG2121 - chr2R_8_8405001 chr2R_8405001 RAL-799 388 chr2R 8565391 8565403 chr2R 8565470 8565482 6 79 1.0 5.5 3.2 1.4 91 chr2R 8565391 exon Cyp6a14 - chr2R 8565436 exon Cyp6a14 - chr2R 8565482 exon Cyp6a14 - chr2R_6_8565001 chr2R_8565001 RAL-799 389 chr2R 8566040 8566062 chr2R 8566992 8567014 1360 6 952 2.0 4.5 3.2 1.4 974 chr2R 8566040 5` UTR Cyp6a14 - chr2R 8566527 5` UTR Cyp6a14 - chr2R 8567014 5` UTR Cyp6a14 - chr2R_6_8565001 chr2R_8565001 RAL-799 390 chr2R 8612585 8612607 chr2R 8612662 8612684 4 77 2.5 1.5 2.0 1.3 99 chr2R 8612585 intron CG8642 - chr2R 8612634 intron CG8642 - chr2R 8612684 intron CG8642 - chr2R_4_8610001 chr2R_8610001 RAL-799 391 chr2R 8777933 8777944 chr2R 8784137 8784148 diver 4 6204 0.5 4.5 2.5 1.1 6215 chr2R 8777933 intergenic not near genes chr2R 8781040 intergenic not near genes chr2R 8784148 intergenic not near genes chr2R_4_8780001 chr2R_8780001 RAL-799 392 chr2R 8806323 8806351 chr2R 8806522 8806550 5 199 1.0 1.0 1.0 2.5 227 chr2R 8806323 intron sns + chr2R 8806436 intron sns + chr2R 8806550 intron sns + chr2R_5_8805001 chr2R_8805001 RAL-799 393 chr2R 8967137 8967161 chr2R 8967225 8967251 9 89 2.5 4.5 3.5 2.0 114 chr2R 8967137 intron CG8216 - chr2R 8967194 intron CG8216 - chr2R 8967251 intron CG8216 - chr2R_9_8965001 chr2R_8965001 RAL-799 394 chr2R 9010918 9010938 chr2R 9011128 9011148 8 210 3.0 4.5 3.8 1.7 230 chr2R 9010918 intron CG8172 - chr2R 9011033 intron CG8172 - chr2R 9011148 intron CG8172 - chr2R_8_9010001 chr2R_9010001 RAL-799 395 chr2R 9151308 9151328 chr2R 9157778 9157798 Burdock 6 6470 0.5 2.5 1.5 2.4 6490 chr2R 9151308 3` UTR CG30345 + chr2R 9154553 intergenic not near genes chr2R 9157798 intergenic CG8008 - chr2R_6_9150001 chr2R_9150001 RAL-799 396 chr2R 9212705 9212712 chr2R 9213184 9213198 roo 4 484 4.5 3.5 4.0 0.8 493 chr2R 9212705 intergenic CR45309 + chr2R 9212952 intergenic CR45309 + chr2R 9213198 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-799 397 chr2R 9227299 9227317 chr2R 9227375 9227393 6 76 0.5 4.0 2.2 1.9 94 chr2R 9227299 intergenic hig - chr2R 9227346 intergenic hig - chr2R 9227393 intergenic hig - chr2R_6_9225001 chr2R_9225001 RAL-799 398 chr2R 9368131 9368153 chr2R 9368206 9368214 8 72 3.0 0.5 1.8 2.9 83 chr2R 9368131 intron CG13954 - chr2R 9368172 intron CG13954 - chr2R 9368214 intron CG13954 - chr2R_8_9365001 chr2R_9365001 RAL-799 399 chr2R 9378111 9378124 chr2R 9378193 9378204 12 81 4.5 3.0 3.8 2.5 93 chr2R 9378111 intron CG13954 - chr2R 9378158 intron CG13954 - chr2R 9378204 intron CG13954 - chr2R_12_9375001 chr2R_9375001 RAL-799 400 chr2R 9378125 9378143 chr2R 9378192 9378225 10 80 2.5 3.0 2.8 2.6 100 chr2R 9378125 intron CG13954 - chr2R 9378175 intron CG13954 - chr2R 9378225 intron CG13954 - chr2R_10_9375001 chr2R_9375001 RAL-799 401 chr2R 9510666 9510698 chr2R 9510782 9510814 8 116 0.5 1.5 1.0 4.0 148 chr2R 9510666 intron brp + chr2R 9510740 intron brp + chr2R 9510814 intron brp + chr2R_8_9510001 chr2R_9510001 RAL-799 402 chr2R 9541624 9541652 chr2R 9541701 9541729 4 76 0.0 1.5 0.8 2.2 105 chr2R 9541624 intergenic brp +,CG1888 - chr2R 9541676 intergenic brp +,CG1888 - chr2R 9541729 intergenic brp +,CG1888 - chr2R_4_9540001 chr2R_9540001 RAL-799 403 chr2R 9561827 9561850 chr2R 9561915 9561938 5 88 0.5 2.0 1.2 2.3 111 chr2R 9561827 3` UTR,intron CR45281 -,CG1809 + chr2R 9561882 3` UTR,intron CR45281 -,CG1809 + chr2R 9561938 3` UTR,intron CR45281 -,CG1809 + chr2R_5_9560001 chr2R_9560001 RAL-799 404 chr2R 9616637 9616646 chr2R 9616741 9616748 7 104 4.0 4.0 4.0 1.4 111 chr2R 9616637 intron Mmp2 - chr2R 9616692 intron Mmp2 - chr2R 9616748 intron Mmp2 - chr2R_7_9615001 chr2R_9615001 RAL-799 405 chr2R 9653260 9653280 chr2R 9653344 9653364 6 81 1.0 1.0 1.0 3.0 104 chr2R 9653260 intron Mmp2 - chr2R 9653312 intron Mmp2 - chr2R 9653364 intron Mmp2 - chr2R_6_9650001 chr2R_9650001 RAL-799 406 chr2R 9726610 9726622 chr2R 9734161 9734173 17.6 4 7551 5.0 1.0 3.0 1.0 7563 chr2R 9726610 intron sqa - chr2R 9730392 intron sqa - chr2R 9734173 intron sqa - chr2R_4_9730001 chr2R_9730001 RAL-799 407 chr2R 9935030 9935057 chr2R 9935112 9935138 5 82 3.0 2.5 2.8 1.3 108 chr2R 9935030 intron Mef2 - chr2R 9935084 intron Mef2 - chr2R 9935138 intron Mef2 - chr2R_5_9935001 chr2R_9935001 RAL-799 408 chr2R 9945431 9945471 chr2R 9945626 9945664 BS 8 192 1.0 2.5 1.8 2.9 233 chr2R 9945431 intron Mef2 - chr2R 9945548 intron Mef2 - chr2R 9945664 intron Mef2 - chr2R_8_9945001 chr2R_9945001 RAL-799 409 chr2R 9966965 9966990 chr2R 9967066 9967091 8 100 3.0 2.5 2.8 2.1 126 chr2R 9966965 intergenic CG12133 + chr2R 9967028 intergenic CG12133 + chr2R 9967091 intergenic CG12133 + chr2R_8_9965001 chr2R_9965001 RAL-799 410 chr2R 10005556 10005570 chr2R 10005664 10005678 6 108 3.0 3.0 3.0 1.5 122 chr2R 10005556 intron Pka-R2 - chr2R 10005617 intron Pka-R2 - chr2R 10005678 intron Pka-R2 - chr2R_6_10005001 chr2R_10005001 RAL-799 411 chr2R 10005848 10005881 chr2R 10007013 10007041 1360 12 1164 3.5 2.5 3.0 3.0 1193 chr2R 10005848 intron Pka-R2 - chr2R 10006444 intron Pka-R2 - chr2R 10007041 intron Pka-R2 - chr2R_12_10005001 chr2R_10005001 RAL-799 412 chr2R 10047812 10047818 chr2R 10047895 10047901 4 83 1.5 2.0 1.8 1.4 89 chr2R 10047812 intron oys - chr2R 10047856 intron oys - chr2R 10047901 intron oys - chr2R_4_10045001 chr2R_10045001 RAL-799 413 chr2R 10171115 10171140 chr2R 10171199 10171223 7 84 1.0 2.5 1.8 2.5 108 chr2R 10171115 intron KCNQ - chr2R 10171169 intron KCNQ - chr2R 10171223 intron KCNQ - chr2R_7_10170001 chr2R_10170001 RAL-799 414 chr2R 10176875 10176906 chr2R 10186045 10186076 roo 5 9170 0.5 1.0 0.8 2.8 9201 chr2R 10176875 intron KCNQ - chr2R 10181476 intron KCNQ - chr2R 10186076 intron KCNQ - chr2R_5_10180001 chr2R_10180001 RAL-799 415 chr2R 10189221 10189234 chr2R 10189299 10189312 4 78 2.0 1.0 1.5 1.6 91 chr2R 10189221 intron KCNQ - chr2R 10189266 intron KCNQ - chr2R 10189312 intron KCNQ - chr2R_4_10185001 chr2R_10185001 RAL-799 416 chr2R 10266500 10266521 chr2R 10266591 10266612 7 90 5.5 2.0 3.8 1.5 112 chr2R 10266500 intron CG12910 + chr2R 10266556 intron CG12910 + chr2R 10266612 intron CG12910 + chr2R_7_10265001 chr2R_10265001 RAL-799 417 chr2R 10277876 10277884 chr2R 10277955 10277963 5 79 4.0 4.0 4.0 1.0 87 chr2R 10277876 intron CAP + chr2R 10277920 intron CAP + chr2R 10277963 intron CAP + chr2R_5_10275001 chr2R_10275001 RAL-799 418 chr2R 10300644 10300660 chr2R 10300740 10300756 6 96 1.0 0.0 0.5 4.0 112 chr2R 10300644 intron CAP + chr2R 10300700 intron CAP + chr2R 10300756 intron CAP + chr2R_6_10300001 chr2R_10300001 RAL-799 419 chr2R 10319718 10319741 chr2R 10319809 10319833 5 92 6.5 3.5 5.0 0.8 115 chr2R 10319718 intron Ndg + chr2R 10319776 intron Ndg + chr2R 10319833 intron Ndg + chr2R_5_10315001 chr2R_10315001 RAL-799 420 chr2R 10352682 10352703 chr2R 10352759 10352780 4 77 1.5 3.0 2.2 1.2 98 chr2R 10352682 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352731 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352780 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_4_10350001 chr2R_10350001 RAL-799 421 chr2R 10376247 10376265 chr2R 10376336 10376354 6 88 1.0 1.0 1.0 3.0 107 chr2R 10376247 intron CG42732 - chr2R 10376300 intron CG42732 - chr2R 10376354 intron CG42732 - chr2R_6_10375001 chr2R_10375001 RAL-799 422 chr2R 10387978 10388000 chr2R 10388075 10388097 8 97 0.0 3.5 1.8 2.9 119 chr2R 10387978 intron CG42732 - chr2R 10388038 intron CG42732 - chr2R 10388097 intron CG42732 - chr2R_8_10385001 chr2R_10385001 RAL-799 423 chr2R 10409066 10409079 chr2R 10409142 10409155 4 76 0.5 1.5 1.0 2.0 89 chr2R 10409066 intron CG42732 - chr2R 10409110 intron CG42732 - chr2R 10409155 intron,exon CG42732 -,CG33477 - chr2R_4_10405001 chr2R_10405001 RAL-799 424 chr2R 10429026 10429034 chr2R 10429103 10429111 4 77 3.5 1.0 2.2 1.2 85 chr2R 10429026 intergenic not near genes chr2R 10429068 intergenic not near genes chr2R 10429111 intergenic not near genes chr2R_4_10425001 chr2R_10425001 RAL-799 425 chr2R 10454098 10454114 chr2R 10454175 10454191 7 77 5.0 4.0 4.5 1.3 93 chr2R 10454098 intron,intron Galphao +,Cyp49a1 - chr2R 10454144 intron,intron Galphao +,Cyp49a1 - chr2R 10454191 intron,intron Galphao +,Cyp49a1 - chr2R_7_10450001 chr2R_10450001 RAL-799 426 chr2R 10456206 10456210 chr2R 10456281 10456290 5 78 0.0 4.5 2.2 1.6 84 chr2R 10456206 intron,intron Galphao +,Cyp49a1 - chr2R 10456248 intron,intron Galphao +,Cyp49a1 - chr2R 10456290 intron,intron Galphao +,Cyp49a1 - chr2R_5_10455001 chr2R_10455001 RAL-799 427 chr2R 10477178 10477188 chr2R 10477518 10477525 4 339 3.0 0.0 1.5 1.6 347 chr2R 10477178 intron whd - chr2R 10477352 intron whd - chr2R 10477525 intron whd - chr2R_4_10475001 chr2R_10475001 RAL-799 428 chr2R 10585574 10585579 chr2R 10594157 10594162 Tirant 4 8583 3.0 1.5 2.2 1.2 8588 chr2R 10585574 intron psq + chr2R 10589868 intron psq + chr2R 10594162 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-799 429 chr2R 10644059 10644082 chr2R 10644137 10644160 6 78 1.5 1.5 1.5 2.4 101 chr2R 10644059 intron Git - chr2R 10644110 intron Git - chr2R 10644160 intron Git - chr2R_6_10640001 chr2R_10640001 RAL-799 430 chr2R 10727135 10727167 chr2R 10727251 10727283 6 117 25.0 25.0 25.0 0.2 148 chr2R 10727135 intron,3` UTR Rab3 -,CG12309 + chr2R 10727209 intron,3` UTR Rab3 -,CG12309 + chr2R 10727283 intron Rab3 - chr2R_6_10725001 chr2R_10725001 RAL-799 431 chr2R 10759875 10759900 chr2R 10759963 10759977 5 86 1.5 2.5 2.0 1.7 102 chr2R 10759875 5` UTR CG33144 - chr2R 10759926 intron CG33144 - chr2R 10759977 intron CG33144 - chr2R_5_10755001 chr2R_10755001 RAL-799 432 chr2R 10761296 10761324 chr2R 10761676 10761704 14 379 4.5 2.5 3.5 3.1 408 chr2R 10761296 intron,5` UTR CG33144 -,CR43605 + chr2R 10761500 intron,5` UTR CG33144 -,CR43605 + chr2R 10761704 intron CG33144 - chr2R_14_10760001 chr2R_10760001 RAL-799 433 chr2R 10947094 10947100 chr2R 10947180 10947187 4 87 3.0 0.0 1.5 1.6 93 chr2R 10947094 5` UTR CR45228 + chr2R 10947140 intergenic CR45228 + chr2R 10947187 intergenic CR45228 + chr2R_4_10945001 chr2R_10945001 RAL-799 434 chr2R 10948026 10948049 chr2R 10955576 10955599 17.6 6 7550 1.5 2.5 2.0 2.0 7573 chr2R 10948026 intergenic not near genes chr2R 10951812 intergenic not near genes chr2R 10955599 intergenic not near genes chr2R_6_10950001 chr2R_10950001 RAL-799 435 chr2R 11034284 11034317 chr2R 11034492 11034524 10 207 3.0 6.0 4.5 1.8 240 chr2R 11034284 intron luna - chr2R 11034404 intron luna - chr2R 11034524 intron luna - chr2R_10_11030001 chr2R_11030001 RAL-799 436 chr2R 11070682 11070712 chr2R 11071165 11071176 10 479 3.0 2.0 2.5 2.9 494 chr2R 11070682 intron luna - chr2R 11070929 intron luna - chr2R 11071176 intron luna - chr2R_10_11070001 chr2R_11070001 RAL-799 437 chr2R 11133825 11133858 chr2R 11133924 11133957 9 99 1.0 0.5 0.8 5.0 132 chr2R 11133825 intergenic not near genes chr2R 11133891 intergenic not near genes chr2R 11133957 intergenic not near genes chr2R_9_11130001 chr2R_11130001 RAL-799 438 chr2R 11206236 11206271 chr2R 11206324 11206343 6 85 2.5 3.0 2.8 1.6 107 chr2R 11206236 intron shn + chr2R 11206290 intron shn + chr2R 11206343 intron shn + chr2R_6_11205001 chr2R_11205001 RAL-799 439 chr2R 11207815 11207843 chr2R 11208008 11208036 BS 8 193 4.5 1.0 2.8 2.1 221 chr2R 11207815 intron shn + chr2R 11207926 intron shn + chr2R 11208036 intron shn + chr2R_8_11205001 chr2R_11205001 RAL-799 440 chr2R 11249183 11249200 chr2R 11249309 11249326 5 125 1.5 3.5 2.5 1.4 143 chr2R 11249183 intergenic CG43112 + chr2R 11249254 intergenic CG43112 + chr2R 11249326 intergenic CG43112 + chr2R_5_11245001 chr2R_11245001 RAL-799 441 chr2R 11393511 11393546 chr2R 11393604 11393639 12 93 2.5 3.5 3.0 3.0 128 chr2R 11393511 intron sprt - chr2R 11393575 intron sprt - chr2R 11393639 intron sprt - chr2R_12_11390001 chr2R_11390001 RAL-799 442 chr2R 11439201 11439203 chr2R 11439275 11439277 4 75 2.0 3.5 2.8 1.1 76 chr2R 11439201 intron CG7777 + chr2R 11439239 intron CG7777 + chr2R 11439277 intron CG7777 + chr2R_4_11435001 chr2R_11435001 RAL-799 443 chr2R 11472651 11472680 chr2R 11473848 11473877 pogo 5 1193 1.5 1.0 1.2 2.3 1226 chr2R 11472651 intergenic not near genes chr2R 11473264 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_5_11470001 chr2R_11470001 RAL-799 444 chr2R 11540814 11540838 chr2R 11540901 11540930 6 91 2.5 1.5 2.0 2.0 116 chr2R 11540814 intergenic not near genes chr2R 11540872 intergenic not near genes chr2R 11540930 intergenic not near genes chr2R_6_11540001 chr2R_11540001 RAL-799 445 chr2R 11614626 11614795 chr2R 11614714 11614883 7 88 2.0 2.0 2.0 2.3 257 chr2R 11614626 intron tou - chr2R 11614754 intron tou - chr2R 11614883 intron tou - chr2R_7_11610001 chr2R_11610001 RAL-799 446 chr2R 11677881 11677897 chr2R 11677953 11677975 6 77 3.0 1.5 2.2 1.9 94 chr2R 11677881 intron,exon Roc2 -,Tret1-2 + chr2R 11677928 intron,3` UTR Roc2 -,Tret1-2 + chr2R 11677975 intron,3` UTR Roc2 -,Tret1-2 + chr2R_6_11675001 chr2R_11675001 RAL-799 447 chr2R 11822979 11823004 chr2R 11823056 11823081 7 77 0.0 0.5 0.2 5.8 102 chr2R 11822979 intergenic not near genes chr2R 11823030 intergenic not near genes chr2R 11823081 intergenic not near genes chr2R_7_11820001 chr2R_11820001 RAL-799 448 chr2R 11932557 11932591 chr2R 11932674 11932707 10 116 0.5 1.5 1.0 5.0 150 chr2R 11932557 intergenic not near genes chr2R 11932632 intergenic not near genes chr2R 11932707 intergenic not near genes chr2R_10_11930001 chr2R_11930001 RAL-799 449 chr2R 8518781 8518965 chr2R 12066175 12066332 8 3547393 11.5 11.0 11.2 0.7 3547551 chr2R 8518781 intron mtt - chr2R 10292556 intron CAP + chr2R 12066332 intron CG8888 - chr2R_8_10290001 chr2R_10290001 RAL-799 450 chr2R 12093951 12093975 chr2R 12094064 12094087 7 113 1.5 2.0 1.8 2.5 136 chr2R 12093951 intron jeb - chr2R 12094019 intron jeb - chr2R 12094087 intron jeb - chr2R_7_12090001 chr2R_12090001 RAL-799 451 chr2R 12146469 12146496 chr2R 12147591 12147616 8 1121 15.0 31.5 23.2 0.3 1147 chr2R 12146469 intron,3` UTR Hen1 +,CG8878 - chr2R 12147042 intron,exon Hen1 +,CG8878 - chr2R 12147616 intron,exon Hen1 +,CG8878 - chr2R_8_12145001 chr2R_12145001 RAL-799 452 chr2R 12145914 12145941 chr2R 12148619 12148642 6 2708 20.5 34.5 27.5 0.2 2728 chr2R 12145914 exon Hen1 + chr2R 12147278 intron,intron Hen1 +,CG8878 - chr2R 12148642 intron,exon Hen1 +,CG8878 - chr2R_6_12145001 chr2R_12145001 RAL-799 453 chr2R 12186001 12186035 chr2R 12186096 12186130 25 95 2.5 4.5 3.5 5.6 129 chr2R 12186001 intron Cyp6g1 + chr2R 12186066 intron Cyp6g1 + chr2R 12186130 intron Cyp6g1 + chr2R_25_12185001 chr2R_12185001 RAL-799 454 chr2R 12187471 12187508 chr2R 12190087 12190124 93 2619 225.0 120.5 172.8 0.5 2653 chr2R 12187471 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_93_12185001 chr2R_12185001 RAL-799 455 chr2R 12334895 12334901 chr2R 12334973 12334978 4 78 2.0 2.0 2.0 1.3 83 chr2R 12334895 intergenic CG8490 + chr2R 12334936 intergenic CG8490 + chr2R 12334978 intergenic CG8490 + chr2R_4_12330001 chr2R_12330001 RAL-799 456 chr2R 12363379 12363415 chr2R 12363811 12363847 17 432 1.5 3.5 2.5 4.9 468 chr2R 12363379 intergenic CG30043 + chr2R 12363613 intergenic CG30043 + chr2R 12363847 intergenic not near genes chr2R_17_12360001 chr2R_12360001 RAL-799 457 chr2R 12501688 12501723 chr2R 12503849 12503885 Rt1c 6 2162 2.0 2.0 2.0 2.0 2197 chr2R 12501688 intron fdl - chr2R 12502786 intron fdl - chr2R 12503885 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-799 458 chr2R 12540494 12540497 chr2R 12540560 12540580 4 78 5.0 2.0 3.5 0.9 86 chr2R 12540494 intron fra + chr2R 12540537 intron fra + chr2R 12540580 intron fra + chr2R_4_12540001 chr2R_12540001 RAL-799 459 chr2R 12555441 12555475 chr2R 12556145 12556180 13 704 4.5 1.5 3.0 3.2 739 chr2R 12555441 intron fra + chr2R 12555810 intron fra + chr2R 12556180 intron fra + chr2R_13_12555001 chr2R_12555001 RAL-799 460 chr2R 12610722 12610742 chr2R 12610817 12610837 11 95 4.5 2.0 3.2 2.6 115 chr2R 12610722 intron Amph + chr2R 12610780 intron Amph + chr2R 12610837 intron Amph + chr2R_11_12610001 chr2R_12610001 RAL-799 461 chr2R 12627494 12627498 chr2R 12627587 12627591 4 93 0.0 2.5 1.2 1.8 97 chr2R 12627494 intron CG17760 + chr2R 12627542 intron CG17760 + chr2R 12627591 intron CG17760 + chr2R_4_12625001 chr2R_12625001 RAL-799 462 chr2R 12707528 12707544 chr2R 12715894 12715910 roo 9 8366 1.0 2.0 1.5 3.6 8382 chr2R 12707528 intron CG42663 + chr2R 12711719 intron CG42663 + chr2R 12715910 intron CG42663 + chr2R_9_12710001 chr2R_12710001 RAL-799 463 chr2R 12789299 12789327 chr2R 12797662 12797687 roo 10 8361 2.0 4.0 3.0 2.5 8388 chr2R 12789299 intron,3` UTR sca +,CR45137 - chr2R 12793493 intron,intron sca +,CR45137 - chr2R 12797687 intron,3` UTR sca +,CR45137 - chr2R_10_12790001 chr2R_12790001 RAL-799 464 chr2R 12819450 12819479 chr2R 12824527 12824556 jockey 4 5077 2.0 2.0 2.0 1.3 5106 chr2R 12819450 intergenic not near genes chr2R 12822003 intergenic not near genes chr2R 12824556 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-799 465 chr2R 12887393 12887402 chr2R 12887644 12887653 4 251 0.0 3.0 1.5 1.6 260 chr2R 12887393 intron vg + chr2R 12887523 intron vg + chr2R 12887653 intron vg + chr2R_4_12885001 chr2R_12885001 RAL-799 466 chr2R 13136839 13136870 chr2R 13141637 13141668 Doc 9 4797 7.5 4.5 6.0 1.3 4829 chr2R 13136839 exon Cap-G + chr2R 13139254 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_9_13135001 chr2R_13135001 RAL-799 467 chr2R 13167438 13167459 chr2R 13167532 13167553 4 94 2.0 0.0 1.0 2.0 115 chr2R 13167438 intron GLaz - chr2R 13167496 intron GLaz - chr2R 13167553 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-799 468 chr2R 13220541 13220566 chr2R 13220620 13220645 6 79 0.0 1.0 0.5 4.0 104 chr2R 13220541 intron CG17059 + chr2R 13220593 intron CG17059 + chr2R 13220645 intron CG17059 + chr2R_6_13220001 chr2R_13220001 RAL-799 469 chr2R 13305501 13305508 chr2R 13305583 13305590 6 82 4.5 1.0 2.8 1.6 89 chr2R 13305501 intergenic not near genes chr2R 13305546 intergenic not near genes chr2R 13305590 intergenic not near genes chr2R_6_13305001 chr2R_13305001 RAL-799 470 chr2R 13431491 13431515 chr2R 13431569 13431594 6 79 3.0 2.0 2.5 1.7 103 chr2R 13431491 intron CG42321 - chr2R 13431542 intron CG42321 - chr2R 13431594 intron CG42321 - chr2R_6_13430001 chr2R_13430001 RAL-799 471 chr2R 13566258 13566276 chr2R 13566338 13566356 7 80 1.5 0.0 0.8 3.9 98 chr2R 13566258 intergenic not near genes chr2R 13566307 intergenic not near genes chr2R 13566356 intergenic not near genes chr2R_7_13565001 chr2R_13565001 RAL-799 472 chr2R 13580502 13580532 chr2R 13580852 13580882 jockey 5 350 0.0 2.5 1.2 2.3 380 chr2R 13580502 3` UTR CG6191 - chr2R 13580692 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580882 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_5_13580001 chr2R_13580001 RAL-799 473 chr2R 13646615 13646641 chr2R 13646721 13646747 14 106 4.5 6.0 5.2 2.3 132 chr2R 13646615 intron fas + chr2R 13646681 intron fas + chr2R 13646747 intron fas + chr2R_14_13645001 chr2R_13645001 RAL-799 474 chr2R 13721208 13721226 chr2R 13721288 13721308 6 81 6.0 4.5 5.2 1.0 100 chr2R 13721208 intron fas + chr2R 13721258 intron fas + chr2R 13721308 intron fas + chr2R_6_13720001 chr2R_13720001 RAL-799 475 chr2R 13728141 13728157 chr2R 13735798 13735814 opus 6 7657 3.0 3.0 3.0 1.5 7673 chr2R 13728141 intron fas + chr2R 13731978 intron fas + chr2R 13735814 intron fas + chr2R_6_13730001 chr2R_13730001 RAL-799 476 chr2R 13749506 13749528 chr2R 13749587 13749596 8 85 2.5 0.5 1.5 3.2 90 chr2R 13749506 intergenic fas + chr2R 13749551 intergenic fas + chr2R 13749596 intergenic fas + chr2R_8_13745001 chr2R_13745001 RAL-799 477 chr2R 13925853 13925872 chr2R 13926029 13926048 4 176 2.0 3.0 2.5 1.1 195 chr2R 13925853 intron shot - chr2R 13925950 intron shot - chr2R 13926048 intron shot - chr2R_4_13925001 chr2R_13925001 RAL-799 478 chr2R 14352696 14352718 chr2R 14352789 14352812 5 94 2.0 2.5 2.2 1.6 116 chr2R 14352696 exon CG8613 + chr2R 14352754 intron CG8613 + chr2R 14352812 intron CG8613 + chr2R_5_14350001 chr2R_14350001 RAL-799 479 chr2R 14357583 14357759 chr2R 14357669 14357899 6 104 2.0 2.0 2.0 2.0 316 chr2R 14357583 intergenic CG8617 -,Arc1 - chr2R 14357741 intergenic Arc1 -,CG8617 - chr2R 14357899 intergenic Arc1 - chr2R_6_14355001 chr2R_14355001 RAL-799 480 chr2R 14381046 14381076 chr2R 14381371 14381401 5 325 3.0 2.0 2.5 1.4 355 chr2R 14381046 intron Dh44-R1 + chr2R 14381224 intron Dh44-R1 + chr2R 14381401 intron Dh44-R1 + chr2R_5_14380001 chr2R_14380001 RAL-799 481 chr2R 14393865 14393898 chr2R 14393950 14393983 12 84 0.5 1.5 1.0 6.0 118 chr2R 14393865 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14393983 intergenic not near genes chr2R_12_14390001 chr2R_14390001 RAL-799 482 chr2R 14467307 14467325 chr2R 14476464 14476482 roo 6 9157 1.0 4.0 2.5 1.7 9175 chr2R 14467307 intergenic not near genes chr2R 14471894 intergenic not near genes chr2R 14476482 5` UTR CR44462 + chr2R_6_14470001 chr2R_14470001 RAL-799 483 chr2R 14530744 14530776 chr2R 14530826 14530858 9 82 2.0 1.5 1.8 3.2 114 chr2R 14530744 intron ttv + chr2R 14530801 intron ttv + chr2R 14530858 intron ttv + chr2R_9_14530001 chr2R_14530001 RAL-799 484 chr2R 14538975 14538991 chr2R 14539051 14539067 5 76 4.5 7.0 5.8 0.7 92 chr2R 14538975 intron ttv + chr2R 14539021 intron ttv + chr2R 14539067 intron ttv + chr2R_5_14535001 chr2R_14535001 RAL-799 485 chr2R 14565561 14565591 chr2R 14565638 14565668 7 77 0.5 1.0 0.8 3.9 107 chr2R 14565561 intron ttv + chr2R 14565614 intron ttv + chr2R 14565668 intron ttv + chr2R_7_14565001 chr2R_14565001 RAL-799 486 chr2R 14566447 14566476 chr2R 14566534 14566563 8 86 1.5 1.0 1.2 3.6 116 chr2R 14566447 intron ttv + chr2R 14566505 intron ttv + chr2R 14566563 intron ttv + chr2R_8_14565001 chr2R_14565001 RAL-799 487 chr2R 14820901 14820927 chr2R 14820988 14821014 8 86 5.5 3.0 4.2 1.5 113 chr2R 14820901 intergenic not near genes chr2R 14820958 intergenic not near genes chr2R 14821014 intergenic not near genes chr2R_8_14820001 chr2R_14820001 RAL-799 488 chr2R 14855031 14855063 chr2R 14855123 14855155 10 92 5.5 0.5 3.0 2.5 124 chr2R 14855031 5` UTR Ciao1 - chr2R 14855093 intergenic Ciao1 -,HPS1 + chr2R 14855155 intergenic Ciao1 -,HPS1 + chr2R_10_14855001 chr2R_14855001 RAL-799 489 chr2R 14889210 14889236 chr2R 14897818 14897844 Max-element 8 8608 3.5 0.0 1.8 2.9 8634 chr2R 14889210 intergenic Cyp6a8 - chr2R 14893527 intergenic not near genes chr2R 14897844 intergenic not near genes chr2R_8_14890001 chr2R_14890001 RAL-799 490 chr2R 14922142 14922174 chr2R 14922218 14922250 7 76 2.5 1.5 2.0 2.3 108 chr2R 14922142 intron CG10249 - chr2R 14922196 intron CG10249 - chr2R 14922250 intron CG10249 - chr2R_7_14920001 chr2R_14920001 RAL-799 491 chr2R 14968442 14968469 chr2R 14968524 14968546 7 81 2.0 3.5 2.8 1.8 104 chr2R 14968442 intron ckn + chr2R 14968494 intron ckn + chr2R 14968546 intron ckn + chr2R_7_14965001 chr2R_14965001 RAL-799 492 chr2R 14979764 14979789 chr2R 14979840 14979865 13 76 4.0 2.0 3.0 3.2 101 chr2R 14979764 3` UTR ckn + chr2R 14979814 3` UTR ckn + chr2R 14979865 3` UTR ckn + chr2R_13_14975001 chr2R_14975001 RAL-799 493 chr2R 15004732 15004760 chr2R 15005061 15005089 jockey 7 329 1.5 2.5 2.0 2.3 357 chr2R 15004732 intergenic not near genes chr2R 15004910 intergenic not near genes chr2R 15005089 intergenic not near genes chr2R_7_15000001 chr2R_15000001 RAL-799 494 chr2R 15065624 15065637 chr2R 15065700 15065714 7 76 3.0 3.5 3.2 1.7 90 chr2R 15065624 intergenic not near genes chr2R 15065669 intergenic not near genes chr2R 15065714 intergenic not near genes chr2R_7_15065001 chr2R_15065001 RAL-799 495 chr2R 15095372 15095379 chr2R 15095449 15095456 5 77 8.5 3.5 6.0 0.7 84 chr2R 15095372 intergenic not near genes chr2R 15095414 intergenic not near genes chr2R 15095456 intergenic not near genes chr2R_5_15095001 chr2R_15095001 RAL-799 496 chr2R 15101012 15101035 chr2R 15101107 15101122 8 93 2.0 1.0 1.5 3.2 110 chr2R 15101012 intergenic not near genes chr2R 15101067 intergenic not near genes chr2R 15101122 intergenic not near genes chr2R_8_15100001 chr2R_15100001 RAL-799 497 chr2R 15119317 15119349 chr2R 15127798 15127824 Tirant 7 8480 2.5 4.5 3.5 1.6 8507 chr2R 15119317 intron chn + chr2R 15123570 intron chn + chr2R 15127824 intron chn + chr2R_7_15120001 chr2R_15120001 RAL-799 498 chr2R 15204166 15204183 chr2R 15204299 15204316 4 133 1.5 1.0 1.2 1.8 150 chr2R 15204166 3` UTR CG11807 + chr2R 15204241 3` UTR CG11807 + chr2R 15204316 3` UTR CG11807 + chr2R_4_15200001 chr2R_15200001 RAL-799 499 chr2R 15333926 15333939 chr2R 15334089 15334101 8 163 2.5 3.0 2.8 2.1 175 chr2R 15333926 exon Hr51 + chr2R 15334014 intron Hr51 + chr2R 15334101 intron Hr51 + chr2R_8_15330001 chr2R_15330001 RAL-799 500 chr2R 15395857 15395889 chr2R 15395962 15395994 11 105 3.5 5.0 4.2 2.1 137 chr2R 15395857 intergenic not near genes chr2R 15395926 intergenic not near genes chr2R 15395994 intergenic not near genes chr2R_11_15395001 chr2R_15395001 RAL-799 501 chr2R 15555423 15555431 chr2R 15555814 15555823 7 392 4.5 3.5 4.0 1.4 400 chr2R 15555423 intergenic CG12963 + chr2R 15555623 exon CG12963 + chr2R 15555823 intron CG12963 + chr2R_7_15555001 chr2R_15555001 RAL-799 502 chr2R 15898880 15898911 chr2R 15898977 15899009 8 97 3.0 1.5 2.2 2.5 129 chr2R 15898880 intron sli - chr2R 15898944 intron sli - chr2R 15899009 intron sli - chr2R_8_15895001 chr2R_15895001 RAL-799 503 chr2R 15987338 15987371 chr2R 15987425 15987458 6 86 1.5 0.5 1.0 3.0 120 chr2R 15987338 intron Strn-Mlck - chr2R 15987398 intron Strn-Mlck - chr2R 15987458 intron,5` UTR Strn-Mlck -,CR45021 + chr2R_6_15985001 chr2R_15985001 RAL-799 504 chr2R 16218606 16218637 chr2R 16218684 16218712 5 73 2.0 1.0 1.5 2.0 106 chr2R 16218606 intron mrj - chr2R 16218659 intron mrj - chr2R 16218712 intron mrj - chr2R_5_16215001 chr2R_16215001 RAL-799 505 chr2R 16243602 16243611 chr2R 16243713 16243721 4 111 1.5 2.5 2.0 1.3 119 chr2R 16243602 3` UTR CngA - chr2R 16243662 3` UTR CngA - chr2R 16243721 3` UTR CngA - chr2R_4_16240001 chr2R_16240001 RAL-799 506 chr2R 16253246 16253280 chr2R 16253324 16253358 14 78 2.5 2.0 2.2 4.4 112 chr2R 16253246 intron CngA - chr2R 16253302 intron CngA - chr2R 16253358 intron CngA - chr2R_14_16250001 chr2R_16250001 RAL-799 507 chr2R 16256459 16256473 chr2R 16257080 16257094 8 621 12.5 24.0 18.2 0.4 635 chr2R 16256459 intron CngA - chr2R 16256776 intron CngA - chr2R 16257094 intron CngA - chr2R_8_16255001 chr2R_16255001 RAL-799 508 chr2R 16289606 16289623 chr2R 16289700 16289717 6 94 0.5 0.5 0.5 4.0 111 chr2R 16289606 intron,exon CR43730 -,JhI-26 + chr2R 16289662 intron,intron CR43730 -,JhI-26 + chr2R 16289717 intron,intron CR43730 -,JhI-26 + chr2R_6_16285001 chr2R_16285001 RAL-799 509 chr2R 16610856 16610886 chr2R 16610943 16610973 9 87 2.5 3.0 2.8 2.4 117 chr2R 16610856 intron CG5065 + chr2R 16610914 intron CG5065 + chr2R 16610973 intron CG5065 + chr2R_9_16610001 chr2R_16610001 RAL-799 510 chr2R 16617068 16617090 chr2R 16617147 16617169 6 79 1.5 3.5 2.5 1.7 101 chr2R 16617068 intron CG5065 + chr2R 16617118 intron CG5065 + chr2R 16617169 intron CG5065 + chr2R_6_16615001 chr2R_16615001 RAL-799 511 chr2R 16781141 16781168 chr2R 16781299 16781326 8 158 4.5 4.5 4.5 1.5 185 chr2R 16781141 exon resilin + chr2R 16781234 exon resilin + chr2R 16781326 exon resilin + chr2R_8_16780001 chr2R_16780001 RAL-799 512 chr2R 16787474 16787485 chr2R 16787556 16787567 4 82 3.0 0.0 1.5 1.6 93 chr2R 16787474 intron CG5522 + chr2R 16787520 intron CG5522 + chr2R 16787567 intron CG5522 + chr2R_4_16785001 chr2R_16785001 RAL-799 513 chr2R 16880034 16880045 chr2R 16880111 16880121 4 75 2.0 0.5 1.2 1.8 87 chr2R 16880034 intron CG8910 - chr2R 16880078 intron CG8910 - chr2R 16880121 intron CG8910 - chr2R_4_16880001 chr2R_16880001 RAL-799 514 chr2R 17046117 17046138 chr2R 17046682 17046715 5 574 1.0 4.0 2.5 1.4 598 chr2R 17046117 exon CG9640 + chr2R 17046416 exon CG9640 + chr2R 17046715 3` UTR CG9640 + chr2R_5_17045001 chr2R_17045001 RAL-799 515 chr2R 17087486 17087500 chr2R 17087564 17087578 6 77 2.5 4.0 3.2 1.4 92 chr2R 17087486 5` UTR CG30460 - chr2R 17087532 5` UTR CG30460 - chr2R 17087578 5` UTR CG30460 - chr2R_6_17085001 chr2R_17085001 RAL-799 516 chr2R 17144360 17144382 chr2R 17145117 17145135 8 756 1.5 1.0 1.2 3.6 775 chr2R 17144360 intergenic not near genes chr2R 17144748 intergenic not near genes chr2R 17145135 intergenic not near genes chr2R_8_17140001 chr2R_17140001 RAL-799 517 chr2R 17147243 17147264 chr2R 17152273 17152295 jockey 4 5031 4.0 3.0 3.5 0.9 5052 chr2R 17147243 intergenic not near genes chr2R 17149769 intergenic not near genes chr2R 17152295 intergenic not near genes chr2R_4_17145001 chr2R_17145001 RAL-799 518 chr2R 17166619 17166640 chr2R 17166696 17166698 5 73 2.0 1.0 1.5 2.0 79 chr2R 17166619 5` UTR CG10953 - chr2R 17166658 intergenic CG10953 - chr2R 17166698 intergenic CG10953 - chr2R_5_17165001 chr2R_17165001 RAL-799 519 chr2R 17210226 17210264 chr2R 17211066 17211104 5 840 4.0 0.5 2.2 1.6 878 chr2R 17210226 intergenic not near genes chr2R 17210665 intergenic not near genes chr2R 17211104 intergenic not near genes chr2R_5_17210001 chr2R_17210001 RAL-799 520 chr2R 17236512 17236536 chr2R 17241716 17241740 copia 10 5204 3.0 1.5 2.2 3.1 5228 chr2R 17236512 intron mbl + chr2R 17239126 intron mbl + chr2R 17241740 intron mbl + chr2R_10_17235001 chr2R_17235001 RAL-799 521 chr2R 17389660 17389688 chr2R 17389761 17389789 10 100 2.5 3.0 2.8 2.6 129 chr2R 17389660 intergenic not near genes chr2R 17389724 intergenic not near genes chr2R 17389789 intergenic not near genes chr2R_10_17385001 chr2R_17385001 RAL-799 522 chr2R 17453659 17453682 chr2R 17453758 17453781 8 99 1.5 3.0 2.2 2.5 122 chr2R 17453659 intron CG10764 + chr2R 17453720 intron CG10764 + chr2R 17453781 intron CG10764 + chr2R_8_17450001 chr2R_17450001 RAL-799 523 chr2R 17784025 17784052 chr2R 17784266 17784293 pogo 7 240 3.0 4.5 3.8 1.5 268 chr2R 17784025 intergenic mir-31a - chr2R 17784159 intergenic mir-31a - chr2R 17784293 intergenic mir-31a - chr2R_7_17780001 chr2R_17780001 RAL-799 524 chr2R 17982926 17982933 chr2R 17983011 17983018 5 85 2.5 2.5 2.5 1.4 92 chr2R 17982926 intron dpr13 - chr2R 17982972 intron dpr13 - chr2R 17983018 intron dpr13 - chr2R_5_17980001 chr2R_17980001 RAL-799 525 chr2R 18021488 18021547 chr2R 18021975 18022035 8 465 11.5 6.5 9.0 0.8 547 chr2R 18021488 exon CG10910 + chr2R 18021762 exon CG10910 + chr2R 18022035 exon CG10910 + chr2R_8_18020001 chr2R_18020001 RAL-799 526 chr2R 18045672 18045702 chr2R 18046024 18046054 jockey 5 352 2.0 1.0 1.5 2.0 382 chr2R 18045672 intergenic not near genes chr2R 18045863 intergenic not near genes chr2R 18046054 intergenic CG5767 - chr2R_5_18045001 chr2R_18045001 RAL-799 527 chr2R 18141815 18141829 chr2R 18141926 18141944 9 115 7.0 3.0 5.0 1.5 129 chr2R 18141815 intron pAbp + chr2R 18141880 intron pAbp + chr2R 18141944 intron pAbp + chr2R_9_18140001 chr2R_18140001 RAL-799 528 chr2R 18314405 18314430 chr2R 18314483 18314508 9 78 0.5 1.0 0.8 5.0 103 chr2R 18314405 intron sbb - chr2R 18314456 intron sbb - chr2R 18314508 intron sbb - chr2R_9_18310001 chr2R_18310001 RAL-799 529 chr2R 18358395 18358412 chr2R 18372607 18372624 roo 5 14212 4.0 5.0 4.5 0.9 14229 chr2R 18358395 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372624 intergenic not near genes chr2R_5_18365001 chr2R_18365001 RAL-799 530 chr2R 18408281 18408305 chr2R 18408402 18408426 14 120 4.0 3.5 3.8 2.9 145 chr2R 18408281 exon GstE8 + chr2R 18408354 exon GstE8 + chr2R 18408426 exon GstE8 + chr2R_14_18405001 chr2R_18405001 RAL-799 531 chr2R 18487848 18487851 chr2R 18495317 18495319 blood 5 7469 0.0 4.0 2.0 1.7 7471 chr2R 18487848 intron CG30116 - chr2R 18491584 intron CG30116 - chr2R 18495319 intron CG30116 - chr2R_5_18490001 chr2R_18490001 RAL-799 532 chr2R 18519948 18519973 chr2R 18520025 18520050 8 76 2.5 1.5 2.0 2.7 102 chr2R 18519948 intron CG43066 + chr2R 18519999 intron CG43066 + chr2R 18520050 intron CG43066 + chr2R_8_18515001 chr2R_18515001 RAL-799 533 chr2R 18550576 18550608 chr2R 18550665 18550690 9 88 2.5 2.5 2.5 2.6 114 chr2R 18550576 intergenic not near genes chr2R 18550633 intergenic not near genes chr2R 18550690 intergenic not near genes chr2R_9_18550001 chr2R_18550001 RAL-799 534 chr2R 18553441 18553470 chr2R 18553521 18553550 8 80 1.5 1.0 1.2 3.6 109 chr2R 18553441 intergenic not near genes chr2R 18553496 intergenic not near genes chr2R 18553550 intergenic not near genes chr2R_8_18550001 chr2R_18550001 RAL-799 535 chr2R 18575808 18575828 chr2R 18581991 18582012 3S18 5 6186 2.5 2.0 2.2 1.6 6204 chr2R 18575808 intron GEFmeso - chr2R 18578910 intron GEFmeso - chr2R 18582012 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-799 536 chr2R 18590866 18590900 chr2R 18600018 18600051 roo 10 9151 3.0 1.0 2.0 3.3 9185 chr2R 18590866 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600051 intron GEFmeso - chr2R_10_18595001 chr2R_18595001 RAL-799 537 chr2R 18608632 18608655 chr2R 18608708 18608731 7 76 1.0 1.0 1.0 3.5 99 chr2R 18608632 intron GEFmeso - chr2R 18608682 intron GEFmeso - chr2R 18608731 intron GEFmeso - chr2R_7_18605001 chr2R_18605001 RAL-799 538 chr2R 18732354 18732375 chr2R 18732488 18732509 6 134 1.5 1.5 1.5 2.4 155 chr2R 18732354 intron Hs3st-A + chr2R 18732432 intron Hs3st-A + chr2R 18732509 intron Hs3st-A + chr2R_6_18730001 chr2R_18730001 RAL-799 539 chr2R 18863317 18863334 chr2R 18863399 18863415 6 82 5.5 3.0 4.2 1.2 98 chr2R 18863317 intergenic CG43069 + chr2R 18863366 intergenic CG43069 + chr2R 18863415 intergenic CG43069 +,CG43070 + chr2R_6_18860001 chr2R_18860001 RAL-799 540 chr2R 18871646 18871677 chr2R 18871731 18871762 10 85 4.5 0.0 2.2 3.1 116 chr2R 18871646 intergenic not near genes chr2R 18871704 intergenic not near genes chr2R 18871762 intergenic not near genes chr2R_10_18870001 chr2R_18870001 RAL-799 541 chr2R 18926507 18926520 chr2R 18926594 18926607 6 87 3.0 1.0 2.0 2.0 100 chr2R 18926507 intron sano + chr2R 18926557 intron sano + chr2R 18926607 intron sano + chr2R_6_18925001 chr2R_18925001 RAL-799 542 chr2R 18953170 18953190 chr2R 18953257 18953277 7 87 2.5 2.0 2.2 2.2 107 chr2R 18953170 intron sano + chr2R 18953224 intron sano + chr2R 18953277 intron sano + chr2R_7_18950001 chr2R_18950001 RAL-799 543 chr2R 18964921 18964950 chr2R 18964997 18965026 4 76 1.5 1.0 1.2 1.8 105 chr2R 18964921 intergenic not near genes chr2R 18964974 intergenic not near genes chr2R 18965026 intergenic not near genes chr2R_4_18960001 chr2R_18960001 RAL-799 544 chr2R 19037728 19037735 chr2R 19037806 19037813 5 78 0.0 0.5 0.2 4.2 85 chr2R 19037728 intergenic not near genes chr2R 19037770 intergenic not near genes chr2R 19037813 intergenic not near genes chr2R_5_19035001 chr2R_19035001 RAL-799 545 chr2R 19072109 19072129 chr2R 19072185 19072204 4 73 3.5 2.0 2.8 1.1 95 chr2R 19072109 intron 5-HT1A + chr2R 19072156 intron 5-HT1A + chr2R 19072204 intron 5-HT1A + chr2R_4_19070001 chr2R_19070001 RAL-799 546 chr2R 19203319 19203335 chr2R 19203735 19203751 6 416 13.0 18.0 15.5 0.4 432 chr2R 19203319 intron hppy + chr2R 19203535 intron hppy + chr2R 19203751 intron hppy + chr2R_6_19200001 chr2R_19200001 RAL-799 547 chr2R 19498493 19498503 chr2R 19498570 19498580 4 77 0.0 2.5 1.2 1.8 87 chr2R 19498493 intron CG15120 + chr2R 19498536 intron CG15120 + chr2R 19498580 intron CG15120 + chr2R_4_19495001 chr2R_19495001 RAL-799 548 chr2R 19582951 19582959 chr2R 19583242 19583250 7 291 3.0 4.0 3.5 1.6 299 chr2R 19582951 intron sm - chr2R 19583100 intron sm - chr2R 19583250 intron sm - chr2R_7_19580001 chr2R_19580001 RAL-799 549 chr2R 19714706 19714729 chr2R 19714782 19714805 6 76 0.5 0.0 0.2 5.0 99 chr2R 19714706 3` UTR CG8517 + chr2R 19714756 3` UTR CG8517 + chr2R 19714805 3` UTR CG8517 + chr2R_6_19710001 chr2R_19710001 RAL-799 550 chr2R 19715836 19715852 chr2R 19723325 19723341 blood 5 7489 5.0 5.5 5.2 0.8 7505 chr2R 19715836 intergenic not near genes chr2R 19719588 intergenic not near genes chr2R 19723341 intergenic not near genes chr2R_5_19715001 chr2R_19715001 RAL-799 551 chr2R 19723791 19723807 chr2R 19724100 19724117 4 309 3.0 2.5 2.8 1.1 326 chr2R 19723791 intergenic not near genes chr2R 19723954 intergenic not near genes chr2R 19724117 intergenic not near genes chr2R_4_19720001 chr2R_19720001 RAL-799 552 chr2R 19776594 19776629 chr2R 19779917 19779952 jockey 6 3323 0.0 3.5 1.8 2.1 3358 chr2R 19776594 intergenic not near genes chr2R 19778273 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_6_19775001 chr2R_19775001 RAL-799 553 chr2R 19899173 19899184 chr2R 19899255 19899266 4 82 4.0 1.5 2.8 1.1 93 chr2R 19899173 intergenic CR44572 - chr2R 19899220 intergenic not near genes chr2R 19899266 intergenic not near genes chr2R_4_19895001 chr2R_19895001 RAL-799 554 chr2R 20080600 20080613 chr2R 20080677 20080690 8 77 0.0 4.5 2.2 2.5 90 chr2R 20080600 intergenic not near genes chr2R 20080645 intergenic not near genes chr2R 20080690 intergenic not near genes chr2R_8_20080001 chr2R_20080001 RAL-799 555 chr2R 20118893 20118904 chr2R 20118980 20118992 5 87 1.0 2.5 1.8 1.8 99 chr2R 20118893 intergenic not near genes chr2R 20118942 intergenic not near genes chr2R 20118992 intergenic not near genes chr2R_5_20115001 chr2R_20115001 RAL-799 556 chr2R 20395021 20395059 chr2R 20395193 20395235 5 170 1.0 0.0 0.5 3.3 214 chr2R 20395021 intergenic not near genes chr2R 20395128 intergenic not near genes chr2R 20395235 intergenic not near genes chr2R_5_20395001 chr2R_20395001 RAL-799 557 chr2R 20504957 20504979 chr2R 20505040 20505063 10 85 0.0 1.0 0.5 6.7 106 chr2R 20504957 3` UTR Obp57b + chr2R 20505010 3` UTR Obp57b + chr2R 20505063 3` UTR Obp57b + chr2R_10_20505001 chr2R_20505001 RAL-799 558 chr2R 20511866 20511883 chr2R 20512576 20512594 10 710 2.5 0.5 1.5 4.0 728 chr2R 20511866 intergenic CR44649 +,CR44648 + chr2R 20512230 intergenic CR44649 +,CG13426 - chr2R 20512594 intergenic CG13426 -,CR44649 + chr2R_10_20510001 chr2R_20510001 RAL-799 559 chr2R 20678200 20678233 chr2R 20678330 20678363 9 130 2.5 1.5 2.0 3.0 163 chr2R 20678200 intergenic not near genes chr2R 20678282 intergenic not near genes chr2R 20678363 intergenic not near genes chr2R_9_20675001 chr2R_20675001 RAL-799 560 chr2R 20739456 20739478 chr2R 20744223 20744246 F-element 7 4767 2.5 4.5 3.5 1.6 4790 chr2R 20739456 intron dpr + chr2R 20741851 intron dpr + chr2R 20744246 intron dpr + chr2R_7_20740001 chr2R_20740001 RAL-799 561 chr2R 20789972 20790000 chr2R 20790111 20790139 10 136 1.5 2.0 1.8 3.6 167 chr2R 20789972 exon CG43667 - chr2R 20790056 exon CG43667 - chr2R 20790139 exon CG43667 - chr2R_10_20790001 chr2R_20790001 RAL-799 562 chr2R 20830537 20830570 chr2R 20830616 20830650 10 80 4.5 3.0 3.8 2.1 113 chr2R 20830537 intron,intron insc -,sktl - chr2R 20830594 intron,intron insc -,sktl - chr2R 20830650 intron,intron insc -,sktl - chr2R_10_20830001 chr2R_20830001 RAL-799 563 chr2R 20968217 20968232 chr2R 20968347 20968362 7 130 3.0 1.0 2.0 2.3 145 chr2R 20968217 intergenic not near genes chr2R 20968290 intergenic not near genes chr2R 20968362 intergenic not near genes chr2R_7_20965001 chr2R_20965001 RAL-799 564 chr2R 21082119 21082152 chr2R 21082536 21082568 9 417 3.5 4.0 3.8 1.9 449 chr2R 21082119 intron Treh + chr2R 21082344 intron Treh + chr2R 21082568 intron Treh + chr2R_9_21080001 chr2R_21080001 RAL-799 565 chr2R 21136901 21136939 chr2R 21136985 21137017 5 83 0.0 1.5 0.8 2.8 116 chr2R 21136901 intron Magi - chr2R 21136959 intron Magi - chr2R 21137017 intron Magi - chr2R_5_21135001 chr2R_21135001 RAL-799 566 chr2R 21141121 21141136 chr2R 21141217 21141232 4 96 0.0 3.0 1.5 1.6 111 chr2R 21141121 intron Magi - chr2R 21141176 intron Magi - chr2R 21141232 intron Magi - chr2R_4_21140001 chr2R_21140001 RAL-799 567 chr2R 21182931 21182940 chr2R 21183157 21183166 5 226 2.0 3.0 2.5 1.4 235 chr2R 21182931 intergenic Pu +,tud + chr2R 21183048 intergenic tud +,Pu + chr2R 21183166 intergenic tud + chr2R_5_21180001 chr2R_21180001 RAL-799 568 chr2R 21505774 21505789 chr2R 21505854 21505870 5 81 3.0 2.5 2.8 1.3 96 chr2R 21505774 intron MESK2 + chr2R 21505822 intron MESK2 + chr2R 21505870 intron MESK2 + chr2R_5_21505001 chr2R_21505001 RAL-799 569 chr2R 21546786 21546814 chr2R 21546867 21546877 7 78 1.5 0.5 1.0 3.5 91 chr2R 21546786 intron Egfr + chr2R 21546832 intron Egfr + chr2R 21546877 intron Egfr + chr2R_7_21545001 chr2R_21545001 RAL-799 570 chr2R 21566410 21566445 chr2R 21566510 21566545 8 97 3.5 4.0 3.8 1.7 135 chr2R 21566410 intron CG10440 - chr2R 21566478 intron CG10440 - chr2R 21566545 intron CG10440 - chr2R_8_21565001 chr2R_21565001 RAL-799 571 chr2R 21592851 21592853 chr2R 21592932 21592935 4 82 7.5 8.0 7.8 0.5 84 chr2R 21592851 intergenic not near genes chr2R 21592893 intergenic not near genes chr2R 21592935 intergenic not near genes chr2R_4_21590001 chr2R_21590001 RAL-799 572 chr2R 21612376 21612382 chr2R 21612464 21612470 5 87 4.5 2.5 3.5 1.1 94 chr2R 21612376 intron CG15673 - chr2R 21612423 intron CG15673 - chr2R 21612470 intron CG15673 - chr2R_5_21610001 chr2R_21610001 RAL-799 573 chr2R 21660877 21660906 chr2R 21660970 21660999 7 92 4.0 3.0 3.5 1.6 122 chr2R 21660877 intergenic pirk - chr2R 21660938 intergenic pirk - chr2R 21660999 3` UTR pirk - chr2R_7_21660001 chr2R_21660001 RAL-799 574 chr2R 21672286 21672316 chr2R 21672450 21672480 8 164 20.0 24.5 22.2 0.3 194 chr2R 21672286 3` UTR CG15676 + chr2R 21672383 3` UTR CG15676 + chr2R 21672480 3` UTR CG15676 + chr2R_8_21670001 chr2R_21670001 RAL-799 575 chr2R 21730260 21730287 chr2R 21730454 21730481 6 194 0.5 2.5 1.5 2.4 221 chr2R 21730260 intergenic not near genes chr2R 21730370 intergenic not near genes chr2R 21730481 intergenic not near genes chr2R_6_21730001 chr2R_21730001 RAL-799 576 chr2R 21738275 21738305 chr2R 21747435 21747439 roo 8 9155 1.0 2.5 1.8 2.9 9164 chr2R 21738275 intergenic not near genes chr2R 21742857 intergenic not near genes chr2R 21747439 intergenic not near genes chr2R_8_21740001 chr2R_21740001 RAL-799 577 chr2R 21749098 21749128 chr2R 21749183 21749213 8 85 0.5 3.0 1.8 2.9 115 chr2R 21749098 intergenic not near genes chr2R 21749156 intergenic not near genes chr2R 21749213 intergenic not near genes chr2R_8_21745001 chr2R_21745001 RAL-799 578 chr2R 21753100 21753115 chr2R 21753571 21753600 roo 4 482 2.5 2.0 2.2 1.2 500 chr2R 21753100 intergenic not near genes chr2R 21753350 intergenic not near genes chr2R 21753600 intergenic not near genes chr2R_4_21750001 chr2R_21750001 RAL-799 579 chr2R 21809526 21809553 chr2R 21817766 21817793 roo 11 8240 3.0 4.0 3.5 2.4 8267 chr2R 21809526 intergenic not near genes chr2R 21813660 intergenic not near genes chr2R 21817793 intergenic not near genes chr2R_11_21810001 chr2R_21810001 RAL-799 580 chr2R 21840799 21840822 chr2R 21840875 21840893 7 73 3.0 2.5 2.8 1.8 94 chr2R 21840799 intergenic not near genes chr2R 21840846 intergenic not near genes chr2R 21840893 intergenic not near genes chr2R_7_21840001 chr2R_21840001 RAL-799 581 chr2R 21888310 21888322 chr2R 21888406 21888419 4 97 1.0 1.0 1.0 2.0 109 chr2R 21888310 intron Fili + chr2R 21888364 intron Fili + chr2R 21888419 intron Fili + chr2R_4_21885001 chr2R_21885001 RAL-799 582 chr2R 21946776 21946804 chr2R 21946872 21946900 4 96 0.5 3.0 1.8 1.4 124 chr2R 21946776 intergenic not near genes chr2R 21946838 intergenic not near genes chr2R 21946900 intergenic not near genes chr2R_4_21945001 chr2R_21945001 RAL-799 583 chr2R 21991229 21991244 chr2R 21991306 21991319 5 76 0.0 2.0 1.0 2.5 90 chr2R 21991229 intron CG34370 - chr2R 21991274 intron CG34370 - chr2R 21991319 intron CG34370 - chr2R_5_21990001 chr2R_21990001 RAL-799 584 chr2R 22088264 22088283 chr2R 22088372 22088391 8 108 2.5 0.0 1.2 3.6 127 chr2R 22088264 intron CG13502 - chr2R 22088328 intron CG13502 - chr2R 22088391 intron CG13502 - chr2R_8_22085001 chr2R_22085001 RAL-799 585 chr2R 22102117 22102135 chr2R 22102205 22102220 4 86 3.5 2.0 2.8 1.1 103 chr2R 22102117 intergenic not near genes chr2R 22102168 intergenic not near genes chr2R 22102220 intergenic not near genes chr2R_4_22100001 chr2R_22100001 RAL-799 586 chr2R 22179221 22179230 chr2R 22179304 22179310 4 82 0.5 0.0 0.2 3.3 89 chr2R 22179221 intron CG11170 - chr2R 22179266 intron CG11170 - chr2R 22179310 intron CG11170 - chr2R_4_22175001 chr2R_22175001 RAL-799 587 chr2R 22349690 22349727 chr2R 22351474 22351510 jockey 14 1784 1.5 3.5 2.5 4.0 1820 chr2R 22349690 intron Liprin-gamma - chr2R 22350600 intron Liprin-gamma - chr2R 22351510 intron Liprin-gamma - chr2R_14_22350001 chr2R_22350001 RAL-799 588 chr2R 22362661 22362680 chr2R 22362740 22362759 4 79 2.0 1.5 1.8 1.4 98 chr2R 22362661 intron Liprin-gamma - chr2R 22362710 intron Liprin-gamma - chr2R 22362759 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-799 589 chr2R 22371060 22371070 chr2R 22371438 22371449 5 379 4.5 0.0 2.2 1.6 389 chr2R 22371060 intron Liprin-gamma - chr2R 22371254 intron Liprin-gamma - chr2R 22371449 intron Liprin-gamma - chr2R_5_22370001 chr2R_22370001 RAL-799 590 chr2R 22525748 22525782 chr2R 22529303 22529337 jockey 6 3555 0.0 3.0 1.5 2.4 3589 chr2R 22525748 intron px - chr2R 22527542 intron px - chr2R 22529337 intron px - chr2R_6_22525001 chr2R_22525001 RAL-799 591 chr2R 22537857 22537874 chr2R 22537946 22537963 4 89 0.0 3.5 1.8 1.4 106 chr2R 22537857 intron px - chr2R 22537910 intron px - chr2R 22537963 intron px - chr2R_4_22535001 chr2R_22535001 RAL-799 592 chr2R 22691751 22691770 chr2R 22691853 22691872 5 101 2.5 1.5 2.0 1.7 121 chr2R 22691751 5` UTR CR44764 + chr2R 22691812 5` UTR CR44764 + chr2R 22691872 5` UTR CR44764 + chr2R_5_22690001 chr2R_22690001 RAL-799 593 chr2R 22725635 22725658 chr2R 22725790 22725813 12 155 4.0 5.5 4.8 2.1 178 chr2R 22725635 intron jbug - chr2R 22725724 intron jbug - chr2R 22725813 intron jbug - chr2R_12_22725001 chr2R_22725001 RAL-799 594 chr2R 22729459 22729464 chr2R 22729667 22729672 INE-1 5 208 3.5 1.5 2.5 1.4 213 chr2R 22729459 intron jbug - chr2R 22729566 intron jbug - chr2R 22729672 intron jbug - chr2R_5_22725001 chr2R_22725001 RAL-799 595 chr2R 22757217 22757249 chr2R 22757491 22757523 12 274 1.0 4.0 2.5 3.4 306 chr2R 22757217 intron,intron CG42260 -,CR30267 + chr2R 22757370 intron,intron CG42260 -,CR30267 + chr2R 22757523 intron,intron CG42260 -,CR30267 + chr2R_12_22755001 chr2R_22755001 RAL-799 596 chr2R 22774962 22774999 chr2R 22775381 22775418 jockey 10 418 4.0 2.0 3.0 2.5 456 chr2R 22774962 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775418 intron CG42260 - chr2R_10_22775001 chr2R_22775001 RAL-799 597 chr2R 22785729 22785759 chr2R 22785806 22785837 6 78 0.0 0.5 0.2 5.0 108 chr2R 22785729 intron CG42260 - chr2R 22785783 intron CG42260 - chr2R 22785837 intron CG42260 - chr2R_6_22785001 chr2R_22785001 RAL-799 598 chr2R 22991633 22991660 chr2R 22991725 22991752 11 92 1.0 2.0 1.5 4.4 119 chr2R 22991633 intron twi + chr2R 22991692 intron twi + chr2R 22991752 intron twi + chr2R_11_22990001 chr2R_22990001 RAL-799 599 chr2R 23158157 23158356 chr2R 23158242 23158432 16 83 6.5 4.0 5.2 2.6 275 chr2R 23158157 intron,5` UTR CG9899 +,CG13545 - chr2R 23158294 intron CG9899 + chr2R 23158432 intron CG9899 + chr2R_16_23155001 chr2R_23155001 RAL-799 600 chr2R 23402623 23402641 chr2R 23407699 23407717 flea 5 5076 2.0 5.5 3.8 1.0 5094 chr2R 23402623 intergenic CG3520 - chr2R 23405170 intergenic not near genes chr2R 23407717 intergenic not near genes chr2R_5_23405001 chr2R_23405001 RAL-799 601 chr2R 23437233 23437238 chr2R 23437310 23437314 4 76 6.5 2.5 4.5 0.7 81 chr2R 23437233 intergenic not near genes chr2R 23437274 intergenic not near genes chr2R 23437314 intergenic not near genes chr2R_4_23435001 chr2R_23435001 RAL-799 602 chr2R 23518194 23518221 chr2R 23518272 23518297 8 78 1.0 1.5 1.2 3.6 103 chr2R 23518194 intergenic not near genes chr2R 23518246 intergenic not near genes chr2R 23518297 intergenic not near genes chr2R_8_23515001 chr2R_23515001 RAL-799 603 chr2R 23529580 23529600 chr2R 23537149 23537174 412 10 7572 4.5 5.5 5.0 1.7 7594 chr2R 23529580 intron bw - chr2R 23533377 intron bw - chr2R 23537174 exon bw - chr2R_10_23530001 chr2R_23530001 RAL-799 604 chr2R 23784474 23784501 chr2R 23784551 23784579 6 78 2.5 1.5 2.0 2.0 105 chr2R 23784474 intron CG9850 - chr2R 23784526 intron CG9850 - chr2R 23784579 intron CG9850 - chr2R_6_23780001 chr2R_23780001 RAL-799 605 chr2R 24031394 24031414 chr2R 24031478 24031480 6 80 3.0 2.5 2.8 1.6 86 chr2R 24031394 5` UTR CG30172 - chr2R 24031437 intergenic CG30172 -,Chi - chr2R 24031480 intergenic CG30172 -,Chi - chr2R_6_24030001 chr2R_24030001 RAL-799 606 chr2R 24147067 24147090 chr2R 24154645 24154668 412 7 7578 2.0 3.0 2.5 2.0 7601 chr2R 24147067 intron Dat + chr2R 24150868 intron Dat + chr2R 24154668 intron Dat + chr2R_7_24150001 chr2R_24150001 RAL-799 607 chr2R 24177237 24177269 chr2R 24184722 24184754 412 8 7485 2.0 3.0 2.5 2.3 7517 chr2R 24177237 3` UTR Nop60B + chr2R 24180996 intron Nop60B + chr2R 24184754 3` UTR Nop60B + chr2R_8_24180001 chr2R_24180001 RAL-799 608 chr2R 24303525 24303529 chr2R 24303604 24303608 4 79 4.5 4.5 4.5 0.7 83 chr2R 24303525 intergenic not near genes chr2R 24303566 intergenic not near genes chr2R 24303608 intergenic not near genes chr2R_4_24300001 chr2R_24300001 RAL-799 609 chr2R 24351412 24351432 chr2R 24351493 24351513 5 81 3.0 3.5 3.2 1.2 101 chr2R 24351412 intron bs + chr2R 24351462 intron bs + chr2R 24351513 intron,3` UTR bs +,CR44811 - chr2R_5_24350001 chr2R_24350001 RAL-799 610 chr2R 24353434 24353458 chr2R 24361796 24361820 roo 10 8362 0.5 1.5 1.0 5.0 8386 chr2R 24353434 intron,intron bs +,CR44811 - chr2R 24357627 intron,intron bs +,CR44811 - chr2R 24361820 intron,intron bs +,CR44811 - chr2R_10_24355001 chr2R_24355001 RAL-799 611 chr2R 24430921 24430948 chr2R 24431009 24431036 7 88 0.0 3.5 1.8 2.5 115 chr2R 24430921 intergenic CG15873 -,Pgam5-2 - chr2R 24430978 intergenic CG15873 -,Pgam5-2 - chr2R 24431036 intergenic Pgam5-2 -,CG15873 - chr2R_7_24430001 chr2R_24430001 RAL-799 612 chr2R 24444030 24444056 chr2R 24444140 24444166 14 109 1.0 2.0 1.5 5.6 136 chr2R 24444030 intergenic not near genes chr2R 24444098 intergenic not near genes chr2R 24444166 intergenic not near genes chr2R_14_24440001 chr2R_24440001 RAL-799 613 chr2R 24509310 24509339 chr2R 24509395 24509422 7 83 0.5 3.5 2.0 2.3 112 chr2R 24509310 intergenic Letm1 - chr2R 24509366 intergenic Letm1 - chr2R 24509422 intergenic Letm1 - chr2R_7_24505001 chr2R_24505001 RAL-799 614 chr2R 24590115 24590145 chr2R 24590207 24590237 14 92 2.5 6.0 4.2 2.7 122 chr2R 24590115 intron pio + chr2R 24590176 intron pio + chr2R 24590237 intron pio + chr2R_14_24590001 chr2R_24590001 RAL-799 615 chr2R 24633993 24634024 chr2R 24634074 24634105 13 80 3.5 4.5 4.0 2.6 112 chr2R 24633993 intron CG13594 - chr2R 24634049 intron CG13594 - chr2R 24634105 intron CG13594 - chr2R_13_24630001 chr2R_24630001 RAL-799 616 chr2R 24727887 24727918 chr2R 24735395 24735425 mdg1 17 7506 2.5 5.0 3.8 3.5 7538 chr2R 24727887 intron Mid1 - chr2R 24731656 intron Mid1 - chr2R 24735425 intron Mid1 - chr2R_17_24730001 chr2R_24730001 RAL-799 617 chr2R 24763610 24763640 chr2R 24765586 24765616 G2 16 1973 3.0 4.5 3.8 3.3 2006 chr2R 24763610 exon CG3894 + chr2R 24764613 intron CG3894 + chr2R 24765616 exon CG3894 + chr2R_16_24760001 chr2R_24760001 RAL-799 618 chr2R 24859840 24859871 chr2R 24859926 24859957 8 86 2.0 1.0 1.5 3.2 117 chr2R 24859840 5` UTR CR44829 + chr2R 24859898 5` UTR CR44829 + chr2R 24859957 5` UTR CR44829 + chr2R_8_24855001 chr2R_24855001 RAL-799 619 chr2R 24884053 24884076 chr2R 24884134 24884158 6 82 2.0 2.0 2.0 2.0 105 chr2R 24884053 intron NKAIN + chr2R 24884106 intron NKAIN + chr2R 24884158 intron NKAIN + chr2R_6_24880001 chr2R_24880001 RAL-799 620 chr2R 25017756 25017769 chr2R 25017839 25017852 8 83 9.5 10.0 9.8 0.7 96 chr2R 25017756 intron uzip + chr2R 25017804 intron uzip + chr2R 25017852 intron uzip + chr2R_8_25015001 chr2R_25015001 RAL-799 621 chr2R 25022650 25022673 chr2R 25022734 25022757 6 84 1.5 2.0 1.8 2.1 107 chr2R 25022650 intron uzip + chr2R 25022704 intron uzip + chr2R 25022757 intron uzip + chr2R_6_25020001 chr2R_25020001 RAL-799 622 chr2R 25061336 25061365 chr2R 25061417 25061446 6 82 3.0 1.5 2.2 1.9 110 chr2R 25061336 intergenic not near genes chr2R 25061391 intergenic not near genes chr2R 25061446 intergenic not near genes chr2R_6_25060001 chr2R_25060001 RAL-799 623 chr2R 25081612 25081629 chr2R 25082707 25082725 9 1094 3.0 3.5 3.2 2.1 1113 chr2R 25081612 intron gol - chr2R 25082168 intron gol - chr2R 25082725 intron gol - chr2R_9_25080001 chr2R_25080001 RAL-799 624 chr2R 25101289 25101305 chr2R 25101391 25101406 8 102 3.0 4.5 3.8 1.7 117 chr2R 25101289 intron lov - chr2R 25101348 intron lov - chr2R 25101406 intron lov - chr2R_8_25100001 chr2R_25100001 RAL-799 625 chr2R 25141654 25141676 chr2R 25159344 25159366 roo 6 17690 3.5 2.5 3.0 1.5 17712 chr2R 25141654 intergenic not near genes chr2R 25150510 intergenic not near genes chr2R 25159366 intergenic not near genes chr2R_6_25150001 chr2R_25150001 RAL-799 626 chr2R 25234771 25234796 chr2R 25234851 25234876 4 80 2.0 2.5 2.2 1.2 105 chr2R 25234771 intron CG9380 - chr2R 25234824 intron CG9380 - chr2R 25234876 intron CG9380 - chr2R_4_25230001 chr2R_25230001 RAL-799 627 chr3L 52913 52939 chr3L 52997 53021 4 84 2.0 3.0 2.5 1.1 108 chr3L 52913 intergenic not near genes chr3L 52967 intergenic not near genes chr3L 53021 intergenic not near genes chr3L_4_50001 chr3L_50001 RAL-799 628 chr3L 68993 69011 chr3L 69075 69098 5 86 1.5 3.0 2.2 1.6 105 chr3L 68993 3` UTR Lsp1gamma + chr3L 69046 intergenic Lsp1gamma +,CR44510 + chr3L 69098 intergenic CR44510 +,Lsp1gamma + chr3L_5_65001 chr3L_65001 RAL-799 629 chr3L 88771 88780 chr3L 90690 90700 4 1920 3.0 5.5 4.2 0.8 1929 chr3L 88771 intergenic not near genes chr3L 89736 intergenic not near genes chr3L 90700 intergenic not near genes chr3L_4_85001 chr3L_85001 RAL-799 630 chr3L 291015 291048 chr3L 291328 291362 13 312 3.0 1.5 2.2 4.1 347 chr3L 291015 exon RhoGEF3 + chr3L 291188 intron RhoGEF3 + chr3L 291362 exon RhoGEF3 + chr3L_13_290001 chr3L_290001 RAL-799 631 chr3L 338804 338832 chr3L 338898 338926 10 94 4.0 2.5 3.2 2.4 122 chr3L 338804 intron,intron Ptpmeg +,mthl10 - chr3L 338865 intron,intron Ptpmeg +,mthl10 - chr3L 338926 intron,intron Ptpmeg +,mthl10 - chr3L_10_335001 chr3L_335001 RAL-799 632 chr3L 363156 363184 chr3L 363260 363267 15 102 3.0 2.5 2.8 3.9 111 chr3L 363156 exon CG1233 + chr3L 363212 exon CG1233 + chr3L 363267 exon CG1233 + chr3L_15_360001 chr3L_360001 RAL-799 633 chr3L 366208 366233 chr3L 366441 366466 9 232 4.0 0.0 2.0 3.0 258 chr3L 366208 exon CG13884 - chr3L 366337 5` UTR CG13884 - chr3L 366466 intergenic CG13884 -,trh - chr3L_9_365001 chr3L_365001 RAL-799 634 chr3L 402687 402716 chr3L 409740 409769 297 9 7053 5.0 3.5 4.2 1.7 7082 chr3L 402687 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409769 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-799 635 chr3L 642470 642496 chr3L 642561 642587 5 91 2.0 2.5 2.2 1.6 117 chr3L 642470 5` UTR CR43334 + chr3L 642528 5` UTR CR43334 + chr3L 642587 5` UTR CR43334 + chr3L_5_640001 chr3L_640001 RAL-799 636 chr3L 732832 732844 chr3L 733053 733066 4 221 1.5 4.5 3.0 1.0 234 chr3L 732832 intergenic not near genes chr3L 732949 intergenic not near genes chr3L 733066 intergenic not near genes chr3L_4_730001 chr3L_730001 RAL-799 637 chr3L 858009 858021 chr3L 866489 866502 Tirant 4 8480 1.0 3.5 2.2 1.2 8493 chr3L 858009 intergenic not near genes chr3L 862256 intergenic not near genes chr3L 866502 5` UTR CG12502 + chr3L_4_860001 chr3L_860001 RAL-799 638 chr3L 925179 925208 chr3L 932605 932634 mdg1 7 7426 3.5 3.5 3.5 1.6 7455 chr3L 925179 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932634 intron Glut1 + chr3L_7_925001 chr3L_925001 RAL-799 639 chr3L 933918 933940 chr3L 934020 934043 7 103 1.5 4.5 3.0 1.8 125 chr3L 933918 intron Glut1 + chr3L 933980 intron Glut1 + chr3L 934043 intron Glut1 + chr3L_7_930001 chr3L_930001 RAL-799 640 chr3L 939773 939798 chr3L 940893 940918 jockey 7 1120 4.0 4.5 4.2 1.3 1145 chr3L 939773 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940918 intron Glut1 + chr3L_7_940001 chr3L_940001 RAL-799 641 chr3L 1015145 1015165 chr3L 1015231 1015253 5 87 2.5 2.0 2.2 1.6 108 chr3L 1015145 intron trio - chr3L 1015199 intron trio - chr3L 1015253 intron trio - chr3L_5_1015001 chr3L_1015001 RAL-799 642 chr3L 1031181 1031196 chr3L 1031280 1031295 4 99 2.5 1.0 1.8 1.4 114 chr3L 1031181 intron trio - chr3L 1031238 intron trio - chr3L 1031295 intron trio - chr3L_4_1030001 chr3L_1030001 RAL-799 643 chr3L 1063341 1063368 chr3L 1063716 1063742 6 376 2.0 3.5 2.8 1.6 401 chr3L 1063341 intron bab1 - chr3L 1063542 intron bab1 - chr3L 1063742 intron bab1 - chr3L_6_1060001 chr3L_1060001 RAL-799 644 chr3L 1109633 1109645 chr3L 1109721 1109733 7 88 7.5 3.0 5.2 1.1 100 chr3L 1109633 intergenic not near genes chr3L 1109683 intergenic not near genes chr3L 1109733 intergenic not near genes chr3L_7_1105001 chr3L_1105001 RAL-799 645 chr3L 1154134 1154155 chr3L 1163283 1163305 roo 5 9150 2.0 0.0 1.0 2.5 9171 chr3L 1154134 intron bab2 - chr3L 1158720 intron bab2 - chr3L 1163305 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-799 646 chr3L 1175722 1175753 chr3L 1175854 1175885 4 132 2.5 1.0 1.8 1.4 163 chr3L 1175722 intron bab2 - chr3L 1175804 intron bab2 - chr3L 1175885 intron bab2 - chr3L_4_1175001 chr3L_1175001 RAL-799 647 chr3L 1219595 1219625 chr3L 1227328 1227357 412 13 7732 2.5 5.5 4.0 2.6 7762 chr3L 1219595 intron mwh + chr3L 1223476 intron mwh + chr3L 1227357 intron mwh + chr3L_13_1220001 chr3L_1220001 RAL-799 648 chr3L 1250978 1251157 chr3L 1252254 1252440 5 1280 14.5 9.0 11.8 0.4 1462 chr3L 1250978 exon CG9129 + chr3L 1251709 3` UTR CG9129 + chr3L 1252440 exon,5` UTR CG9130 +,CG9133 + chr3L_5_1250001 chr3L_1250001 RAL-799 649 chr3L 1257634 1257649 chr3L 1257714 1257729 5 79 0.0 2.5 1.2 2.3 95 chr3L 1257634 intron CG9134 + chr3L 1257682 intron CG9134 + chr3L 1257729 intron CG9134 + chr3L_5_1255001 chr3L_1255001 RAL-799 650 chr3L 1310982 1311015 chr3L 1315842 1315875 13 4860 38.0 29.0 33.5 0.4 4893 chr3L 1310982 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315875 exon CG9153 + chr3L_13_1310001 chr3L_1310001 RAL-799 651 chr3L 1361292 1361308 chr3L 1361366 1361384 7 75 10.0 5.0 7.5 0.8 92 chr3L 1361292 intron Ptp61F - chr3L 1361338 intron Ptp61F - chr3L 1361384 intron Ptp61F - chr3L_7_1360001 chr3L_1360001 RAL-799 652 chr3L 1374433 1374455 chr3L 1374508 1374521 5 74 2.5 3.0 2.8 1.3 88 chr3L 1374433 intron,intron Ptp61F -,ru + chr3L 1374477 intron,intron Ptp61F -,ru + chr3L 1374521 intron,intron Ptp61F -,ru + chr3L_5_1370001 chr3L_1370001 RAL-799 653 chr3L 1396749 1396757 chr3L 1396825 1396841 4 82 2.5 0.5 1.5 1.6 92 chr3L 1396749 intron Ptp61F - chr3L 1396795 intron Ptp61F - chr3L 1396841 intron Ptp61F - chr3L_4_1395001 chr3L_1395001 RAL-799 654 chr3L 1415773 1415804 chr3L 1415855 1415886 16 82 6.0 3.0 4.5 2.9 113 chr3L 1415773 intron Ptp61F - chr3L 1415830 intron Ptp61F - chr3L 1415886 intron Ptp61F - chr3L_16_1415001 chr3L_1415001 RAL-799 655 chr3L 1502002 1502014 chr3L 1502083 1502095 4 81 1.0 3.5 2.2 1.2 93 chr3L 1502002 intron pUf68 - chr3L 1502048 intron pUf68 - chr3L 1502095 intron pUf68 - chr3L_4_1500001 chr3L_1500001 RAL-799 656 chr3L 1506004 1506028 chr3L 1513601 1513625 17.6 7 7597 5.0 2.5 3.8 1.5 7621 chr3L 1506004 intron,intron Psa +,cue - chr3L 1509814 intron,intron Psa +,cue - chr3L 1513625 intron,intron Psa +,cue - chr3L_7_1505001 chr3L_1505001 RAL-799 657 chr3L 1571482 1571491 chr3L 1571562 1571576 5 84 1.0 2.0 1.5 2.0 94 chr3L 1571482 intron CG12004 + chr3L 1571529 intron CG12004 + chr3L 1571576 intron CG12004 + chr3L_5_1570001 chr3L_1570001 RAL-799 658 chr3L 1688250 1688271 chr3L 1688378 1688400 5 129 1.0 0.0 0.5 3.3 150 chr3L 1688250 intron CG7991 + chr3L 1688325 intron CG7991 + chr3L 1688400 intron CG7991 + chr3L_5_1685001 chr3L_1685001 RAL-799 659 chr3L 1728522 1728551 chr3L 1728607 1728636 7 85 1.5 5.0 3.2 1.7 114 chr3L 1728522 intron drpr - chr3L 1728579 intron drpr - chr3L 1728636 intron drpr - chr3L_7_1725001 chr3L_1725001 RAL-799 660 chr3L 1740856 1740880 chr3L 1741100 1741125 pogo 10 245 1.5 3.5 2.5 2.9 269 chr3L 1740856 intron Gk + chr3L 1740990 intron Gk + chr3L 1741125 intron Gk + chr3L_10_1740001 chr3L_1740001 RAL-799 661 chr3L 1809639 1809663 chr3L 1809727 1809751 4 87 5.5 3.0 4.2 0.8 112 chr3L 1809639 intergenic not near genes chr3L 1809695 intergenic not near genes chr3L 1809751 intergenic not near genes chr3L_4_1805001 chr3L_1805001 RAL-799 662 chr3L 1879127 1879139 chr3L 1879205 1879217 7 78 1.5 0.5 1.0 3.5 90 chr3L 1879127 intron CG13937 - chr3L 1879172 intron CG13937 - chr3L 1879217 intron CG13937 - chr3L_7_1875001 chr3L_1875001 RAL-799 663 chr3L 1922455 1922463 chr3L 1922531 1922541 4 78 7.0 7.0 7.0 0.5 86 chr3L 1922455 intron Dbx + chr3L 1922498 intron Dbx + chr3L 1922541 intron Dbx + chr3L_4_1920001 chr3L_1920001 RAL-799 664 chr3L 2139205 2139234 chr3L 2139286 2139315 9 81 0.5 1.0 0.8 5.0 110 chr3L 2139205 intron zormin - chr3L 2139260 intron zormin - chr3L 2139315 intron zormin - chr3L_9_2135001 chr3L_2135001 RAL-799 665 chr3L 2168770 2168798 chr3L 2168861 2168889 7 91 2.0 4.0 3.0 1.8 119 chr3L 2168770 exon CG15879 - chr3L 2168830 intron CG15879 - chr3L 2168889 intron CG15879 - chr3L_7_2165001 chr3L_2165001 RAL-799 666 chr3L 2308003 2308036 chr3L 2308109 2308142 10 104 0.0 1.5 0.8 5.6 139 chr3L 2308003 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308142 intergenic not near genes chr3L_10_2305001 chr3L_2305001 RAL-799 667 chr3L 2351490 2351510 chr3L 2352044 2352064 4 554 1.5 2.5 2.0 1.3 574 chr3L 2351490 intergenic not near genes chr3L 2351777 intergenic not near genes chr3L 2352064 intergenic not near genes chr3L_4_2350001 chr3L_2350001 RAL-799 668 chr3L 2380343 2380373 chr3L 2380420 2380450 8 77 1.0 1.0 1.0 4.0 107 chr3L 2380343 intergenic not near genes chr3L 2380396 intergenic not near genes chr3L 2380450 intergenic not near genes chr3L_8_2380001 chr3L_2380001 RAL-799 669 chr3L 2447507 2447532 chr3L 2456663 2456688 roo 6 9155 4.0 4.0 4.0 1.2 9181 chr3L 2447507 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456688 intron CG45186 + chr3L_6_2450001 chr3L_2450001 RAL-799 670 chr3L 2683949 2683973 chr3L 2684025 2684049 6 76 1.5 0.0 0.8 3.3 100 chr3L 2683949 intron Fife - chr3L 2683999 intron Fife - chr3L 2684049 intron Fife - chr3L_6_2680001 chr3L_2680001 RAL-799 671 chr3L 2751451 2751477 chr3L 2755746 2755771 F-element 7 4295 2.0 1.5 1.8 2.5 4320 chr3L 2751451 intron Mrtf - chr3L 2753611 intron Mrtf - chr3L 2755771 intron Mrtf - chr3L_7_2750001 chr3L_2750001 RAL-799 672 chr3L 2908157 2908182 chr3L 2908258 2908283 5 101 2.5 4.5 3.5 1.1 126 chr3L 2908157 intron Shab + chr3L 2908220 intron Shab + chr3L 2908283 intron Shab + chr3L_5_2905001 chr3L_2905001 RAL-799 673 chr3L 2911783 2911809 chr3L 2911875 2911902 7 93 2.0 3.5 2.8 1.8 119 chr3L 2911783 intron Shab + chr3L 2911842 intron Shab + chr3L 2911902 intron Shab + chr3L_7_2910001 chr3L_2910001 RAL-799 674 chr3L 2927840 2927871 chr3L 2936117 2936148 Tirant 7 8276 2.5 4.0 3.2 1.7 8308 chr3L 2927840 intron Shab + chr3L 2931994 intron Shab + chr3L 2936148 intron Shab + chr3L_7_2930001 chr3L_2930001 RAL-799 675 chr3L 3061294 3061317 chr3L 3069877 3069899 Tirant 5 8582 2.5 2.0 2.2 1.6 8605 chr3L 3061294 intron CG32486 - chr3L 3065596 intron CG32486 - chr3L 3069899 intron CG32486 - chr3L_5_3065001 chr3L_3065001 RAL-799 676 chr3L 3134657 3134692 chr3L 3135280 3135285 9 619 3.0 1.5 2.2 2.8 628 chr3L 3134657 intron CG11537 - chr3L 3134971 intron CG11537 - chr3L 3135285 intron CG11537 - chr3L_9_3130001 chr3L_3130001 RAL-799 677 chr3L 3138987 3139001 chr3L 3139074 3139090 4 88 2.5 0.5 1.5 1.6 103 chr3L 3138987 intron CG11537 - chr3L 3139038 intron CG11537 - chr3L 3139090 intron CG11537 - chr3L_4_3135001 chr3L_3135001 RAL-799 678 chr3L 3259627 3259821 chr3L 3259720 3259921 5 96 0.0 4.0 2.0 1.7 294 chr3L 3259627 intron ckd + chr3L 3259774 intron ckd + chr3L 3259921 intron ckd + chr3L_5_3255001 chr3L_3255001 RAL-799 679 chr3L 3281460 3281474 chr3L 3281956 3281970 Doc 7 495 1.0 9.5 5.2 1.1 510 chr3L 3281460 intron CG12017 + chr3L 3281715 intron CG12017 + chr3L 3281970 intron CG12017 + chr3L_7_3280001 chr3L_3280001 RAL-799 680 chr3L 3314135 3314171 chr3L 3314269 3314305 19 133 7.0 9.0 8.0 2.1 170 chr3L 3314135 intergenic ZnT63C +,Drsl2 + chr3L 3314220 intergenic Drsl2 +,ZnT63C + chr3L 3314305 intergenic Drsl2 +,ZnT63C + chr3L_19_3310001 chr3L_3310001 RAL-799 681 chr3L 3312265 3312299 chr3L 3315546 3315580 6 3281 23.5 22.5 23.0 0.2 3315 chr3L 3312265 exon ZnT63C + chr3L 3313922 3` UTR ZnT63C + chr3L 3315580 intergenic Drsl4 +,Drsl3 + chr3L_6_3310001 chr3L_3310001 RAL-799 682 chr3L 3389410 3389424 chr3L 3389486 3389502 6 76 3.0 4.0 3.5 1.3 92 chr3L 3389410 intergenic not near genes chr3L 3389456 intergenic not near genes chr3L 3389502 intergenic not near genes chr3L_6_3385001 chr3L_3385001 RAL-799 683 chr3L 3470160 3470184 chr3L 3470235 3470260 5 76 2.5 0.5 1.5 2.0 100 chr3L 3470160 intron CG14971 - chr3L 3470210 intron CG14971 - chr3L 3470260 intron CG14971 - chr3L_5_3470001 chr3L_3470001 RAL-799 684 chr3L 3475086 3475109 chr3L 3475529 3475553 jockey 10 444 1.0 6.0 3.5 2.2 467 chr3L 3475086 intron CG42324 + chr3L 3475320 intron CG42324 + chr3L 3475553 intron CG42324 + chr3L_10_3475001 chr3L_3475001 RAL-799 685 chr3L 3483547 3483569 chr3L 3483754 3483776 5 207 1.5 4.0 2.8 1.3 229 chr3L 3483547 intron CG42324 + chr3L 3483662 intron CG42324 + chr3L 3483776 intron CG42324 + chr3L_5_3480001 chr3L_3480001 RAL-799 686 chr3L 3566403 3566422 chr3L 3566486 3566505 9 83 3.0 2.5 2.8 2.4 102 chr3L 3566403 intron Eip63E + chr3L 3566454 intron Eip63E + chr3L 3566505 intron Eip63E + chr3L_9_3565001 chr3L_3565001 RAL-799 687 chr3L 3580273 3580296 chr3L 3580548 3580571 4 275 1.5 4.0 2.8 1.1 298 chr3L 3580273 intron Eip63E + chr3L 3580422 intron Eip63E + chr3L 3580571 intron Eip63E + chr3L_4_3580001 chr3L_3580001 RAL-799 688 chr3L 3619398 3619417 chr3L 3619492 3619511 4 94 4.5 1.0 2.8 1.1 113 chr3L 3619398 intergenic not near genes chr3L 3619454 intergenic not near genes chr3L 3619511 intergenic not near genes chr3L_4_3615001 chr3L_3615001 RAL-799 689 chr3L 3627239 3627263 chr3L 3627344 3627368 5 105 1.0 1.0 1.0 2.5 129 chr3L 3627239 intron dar1 + chr3L 3627304 intron dar1 + chr3L 3627368 intron dar1 + chr3L_5_3625001 chr3L_3625001 RAL-799 690 chr3L 3815055 3815075 chr3L 3815136 3815156 6 81 6.0 4.5 5.2 1.0 101 chr3L 3815055 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815106 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815156 intron,intron Scsalpha +,CR43932 - chr3L_6_3815001 chr3L_3815001 RAL-799 691 chr3L 3864846 3864851 chr3L 3864929 3864934 4 83 3.0 1.0 2.0 1.3 88 chr3L 3864846 intergenic CR45379 - chr3L 3864890 intergenic CR45379 - chr3L 3864934 intergenic not near genes chr3L_4_3860001 chr3L_3860001 RAL-799 692 chr3L 4050790 4050808 chr3L 4050871 4050889 8 81 4.0 2.5 3.2 1.9 99 chr3L 4050790 intron CG1136 + chr3L 4050840 intron CG1136 + chr3L 4050889 intron CG1136 + chr3L_8_4050001 chr3L_4050001 RAL-799 693 chr3L 4146812 4146840 chr3L 4146894 4146921 6 82 0.0 1.0 0.5 4.0 109 chr3L 4146812 intergenic not near genes chr3L 4146866 intergenic not near genes chr3L 4146921 intergenic not near genes chr3L_6_4145001 chr3L_4145001 RAL-799 694 chr3L 4170156 4170163 chr3L 4170234 4170241 5 77 0.0 1.5 0.8 2.8 85 chr3L 4170156 intergenic Ero1L + chr3L 4170198 intergenic Ero1L + chr3L 4170241 intergenic Ero1L + chr3L_5_4170001 chr3L_4170001 RAL-799 695 chr3L 4195141 4195172 chr3L 4195245 4195275 7 103 2.5 5.0 3.8 1.5 134 chr3L 4195141 exon CG43367 + chr3L 4195208 intron CG43367 + chr3L 4195275 intron CG43367 + chr3L_7_4195001 chr3L_4195001 RAL-799 696 chr3L 4328738 4328765 chr3L 4336236 4336263 412 8 7498 1.0 2.5 1.8 2.9 7525 chr3L 4328738 intron Cip4 - chr3L 4332500 intron Cip4 - chr3L 4336263 intron Cip4 - chr3L_8_4330001 chr3L_4330001 RAL-799 697 chr3L 4364202 4364213 chr3L 4364291 4364302 4 89 0.0 0.0 0.0 4.0 100 chr3L 4364202 intergenic Cip4 -,mRpS6 + chr3L 4364252 intergenic Cip4 -,mRpS6 + chr3L 4364302 intergenic Cip4 -,mRpS6 + chr3L_4_4360001 chr3L_4360001 RAL-799 698 chr3L 4607282 4607292 chr3L 4607373 4607383 4 91 0.0 4.5 2.2 1.2 101 chr3L 4607282 intron Src64B - chr3L 4607332 intron Src64B - chr3L 4607383 intron Src64B - chr3L_4_4605001 chr3L_4605001 RAL-799 699 chr3L 4754760 4754771 chr3L 4754836 4754845 4 75 1.0 2.5 1.8 1.4 85 chr3L 4754760 intron RhoGEF64C + chr3L 4754802 intron RhoGEF64C + chr3L 4754845 intron RhoGEF64C + chr3L_4_4750001 chr3L_4750001 RAL-799 700 chr3L 4858302 4858337 chr3L 4858391 4858427 16 86 2.5 4.0 3.2 3.8 125 chr3L 4858302 intergenic not near genes chr3L 4858364 intergenic not near genes chr3L 4858427 intergenic not near genes chr3L_16_4855001 chr3L_4855001 RAL-799 701 chr3L 4926105 4926124 chr3L 4926174 4926203 4 76 0.0 1.5 0.8 2.2 98 chr3L 4926105 intergenic not near genes chr3L 4926154 intergenic not near genes chr3L 4926203 intergenic not near genes chr3L_4_4925001 chr3L_4925001 RAL-799 702 chr3L 4958432 4958442 chr3L 4958510 4958515 4 82 4.0 1.0 2.5 1.1 83 chr3L 4958432 intron Con - chr3L 4958474 intron Con - chr3L 4958515 intron Con - chr3L_4_4955001 chr3L_4955001 RAL-799 703 chr3L 5034156 5034180 chr3L 5043308 5043332 roo 5 9151 2.0 2.5 2.2 1.6 9176 chr3L 5034156 intron Con - chr3L 5038744 intron Con - chr3L 5043332 intron Con - chr3L_5_5035001 chr3L_5035001 RAL-799 704 chr3L 5427357 5427386 chr3L 5427962 5427991 8 605 0.5 0.5 0.5 5.3 634 chr3L 5427357 intron CG34391 + chr3L 5427674 intron CG34391 + chr3L 5427991 intron CG34391 + chr3L_8_5425001 chr3L_5425001 RAL-799 705 chr3L 5482940 5483095 chr3L 5483149 5483180 7 153 0.5 0.5 0.5 4.7 240 chr3L 5482940 exon CG4835 + chr3L 5483060 exon CG4835 + chr3L 5483180 exon CG4835 + chr3L_7_5480001 chr3L_5480001 RAL-799 706 chr3L 5498420 5498428 chr3L 5498497 5498505 4 77 0.0 4.5 2.2 1.2 85 chr3L 5498420 exon blanks - chr3L 5498462 exon blanks - chr3L 5498505 exon blanks - chr3L_4_5495001 chr3L_5495001 RAL-799 707 chr3L 5521505 5521524 chr3L 5521593 5521613 8 89 2.0 4.0 3.0 2.0 108 chr3L 5521505 intron Lkr - chr3L 5521559 intron Lkr - chr3L 5521613 intron Lkr - chr3L_8_5520001 chr3L_5520001 RAL-799 708 chr3L 5537725 5537747 chr3L 5538060 5538089 jockey 4 340 0.5 1.5 1.0 2.0 364 chr3L 5537725 intergenic not near genes chr3L 5537907 intergenic not near genes chr3L 5538089 intergenic CG10625 - chr3L_4_5535001 chr3L_5535001 RAL-799 709 chr3L 5726861 5726893 chr3L 5726968 5727000 7 105 3.0 3.5 3.2 1.7 139 chr3L 5726861 intron sif + chr3L 5726930 intron sif + chr3L 5727000 intron sif + chr3L_7_5725001 chr3L_5725001 RAL-799 710 chr3L 5910034 5910061 chr3L 5910274 5910302 pogo 7 240 1.5 3.0 2.2 2.2 268 chr3L 5910034 intron CG13288 + chr3L 5910168 intron CG13288 + chr3L 5910302 intron CG13288 + chr3L_7_5910001 chr3L_5910001 RAL-799 711 chr3L 5926315 5926350 chr3L 5926504 5926540 BS 9 190 1.0 3.5 2.2 2.8 225 chr3L 5926315 intron Vap-33B + chr3L 5926428 intron Vap-33B + chr3L 5926540 intron Vap-33B + chr3L_9_5925001 chr3L_5925001 RAL-799 712 chr3L 5940076 5940111 chr3L 5940168 5940203 11 92 3.5 2.0 2.8 2.9 127 chr3L 5940076 intron CG33993 - chr3L 5940140 intron CG33993 - chr3L 5940203 intron CG33993 - chr3L_11_5940001 chr3L_5940001 RAL-799 713 chr3L 6028384 6028392 chr3L 6028482 6028484 4 96 0.5 3.5 2.0 1.3 100 chr3L 6028384 intergenic not near genes chr3L 6028434 intergenic not near genes chr3L 6028484 intergenic not near genes chr3L_4_6025001 chr3L_6025001 RAL-799 714 chr3L 6028394 6028403 chr3L 6028470 6028501 5 91 0.5 3.0 1.8 1.8 107 chr3L 6028394 intergenic not near genes chr3L 6028448 intergenic not near genes chr3L 6028501 intergenic not near genes chr3L_5_6025001 chr3L_6025001 RAL-799 715 chr3L 6052647 6052668 chr3L 6052732 6052745 11 82 10.5 9.0 9.8 1.0 98 chr3L 6052647 exon Jon65Aii + chr3L 6052696 intron Jon65Aii + chr3L 6052745 exon Jon65Aii + chr3L_11_6050001 chr3L_6050001 RAL-799 716 chr3L 6162352 6162383 chr3L 6162433 6162464 6 77 1.5 0.5 1.0 3.0 112 chr3L 6162352 intergenic CR45744 - chr3L 6162408 intergenic CR45744 - chr3L 6162464 intergenic CR45744 - chr3L_6_6160001 chr3L_6160001 RAL-799 717 chr3L 6220915 6220946 chr3L 6230067 6230098 roo 14 9151 3.5 1.5 2.5 4.0 9183 chr3L 6220915 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230098 intergenic not near genes chr3L_14_6225001 chr3L_6225001 RAL-799 718 chr3L 6233311 6233339 chr3L 6233432 6233460 8 119 2.5 1.5 2.0 2.7 149 chr3L 6233311 5` UTR BG642312 - chr3L 6233386 intergenic BG642312 -,CG42714 - chr3L 6233460 intergenic CG42714 -,BG642312 - chr3L_8_6230001 chr3L_6230001 RAL-799 719 chr3L 6335012 6335033 chr3L 6335480 6335503 297 5 470 2.0 3.0 2.5 1.4 491 chr3L 6335012 intron CG13300 - chr3L 6335258 intron CG13300 - chr3L 6335503 intron CG13300 - chr3L_5_6335001 chr3L_6335001 RAL-799 720 chr3L 6405658 6405690 chr3L 6432121 6432154 roo 4 26464 0.5 2.0 1.2 1.8 26496 chr3L 6405658 intron CG42747 + chr3L 6418906 intron CG42747 + chr3L 6432154 intron CG42747 + chr3L_4_6415001 chr3L_6415001 RAL-799 721 chr3L 6665814 6665840 chr3L 6665907 6665921 5 90 0.0 1.5 0.8 2.8 107 chr3L 6665814 intergenic eIF4E-4 -,CR45173 - chr3L 6665868 intergenic CR45173 -,eIF4E-4 - chr3L 6665921 intergenic CR45173 -,eIF4E-4 - chr3L_5_6665001 chr3L_6665001 RAL-799 722 chr3L 6855931 6855944 chr3L 6860715 6860728 Doc 5 4784 5.0 3.5 4.2 1.0 4797 chr3L 6855931 intergenic not near genes chr3L 6858330 intergenic not near genes chr3L 6860728 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-799 723 chr3L 6887515 6887550 chr3L 6895007 6895040 roo 9 7492 5.0 1.5 3.2 2.1 7525 chr3L 6887515 intergenic not near genes chr3L 6891278 intergenic not near genes chr3L 6895040 intergenic not near genes chr3L_9_6890001 chr3L_6890001 RAL-799 724 chr3L 6990729 6990752 chr3L 6990805 6990832 5 79 1.0 2.0 1.5 2.0 103 chr3L 6990729 5` UTR bin + chr3L 6990780 5` UTR bin + chr3L 6990832 exon bin + chr3L_5_6990001 chr3L_6990001 RAL-799 725 chr3L 7090022 7090050 chr3L 7090103 7090131 10 81 1.5 4.5 3.0 2.5 109 chr3L 7090022 intergenic not near genes chr3L 7090076 intergenic not near genes chr3L 7090131 intergenic not near genes chr3L_10_7090001 chr3L_7090001 RAL-799 726 chr3L 7112592 7112618 chr3L 7112679 7112705 9 87 2.0 3.5 2.8 2.4 113 chr3L 7112592 intron form3 + chr3L 7112648 intron form3 + chr3L 7112705 intron form3 + chr3L_9_7110001 chr3L_7110001 RAL-799 727 chr3L 7150875 7150901 chr3L 7150951 7150977 6 76 0.0 1.5 0.8 3.3 102 chr3L 7150875 intron corn - chr3L 7150926 intron corn - chr3L 7150977 intron corn - chr3L_6_7150001 chr3L_7150001 RAL-799 728 chr3L 7187409 7187423 chr3L 7187491 7187505 5 82 0.0 0.0 0.0 5.0 96 chr3L 7187409 intron Dscam2 - chr3L 7187457 intron Dscam2 - chr3L 7187505 intron Dscam2 - chr3L_5_7185001 chr3L_7185001 RAL-799 729 chr3L 7285450 7285464 chr3L 7285528 7285542 6 78 0.5 1.0 0.8 3.3 92 chr3L 7285450 intron unc-13-4A - chr3L 7285496 intron unc-13-4A - chr3L 7285542 intron unc-13-4A - chr3L_6_7285001 chr3L_7285001 RAL-799 730 chr3L 7377319 7377337 chr3L 7380424 7380442 297 4 3105 2.0 2.5 2.2 1.2 3123 chr3L 7377319 intron SMSr - chr3L 7378880 intron SMSr - chr3L 7380442 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-799 731 chr3L 7576218 7576244 chr3L 7576306 7576332 7 88 2.0 5.0 3.5 1.6 114 chr3L 7576218 intergenic not near genes chr3L 7576275 intergenic not near genes chr3L 7576332 intergenic not near genes chr3L_7_7575001 chr3L_7575001 RAL-799 732 chr3L 7581625 7581655 chr3L 7581708 7581724 9 81 1.5 1.5 1.5 3.6 99 chr3L 7581625 intergenic not near genes chr3L 7581674 intergenic not near genes chr3L 7581724 intergenic not near genes chr3L_9_7580001 chr3L_7580001 RAL-799 733 chr3L 7591154 7591181 chr3L 7591245 7591268 6 90 2.0 4.0 3.0 1.5 114 chr3L 7591154 intergenic CG7716 - chr3L 7591211 intergenic CG7716 - chr3L 7591268 intergenic CG7716 - chr3L_6_7590001 chr3L_7590001 RAL-799 734 chr3L 7711832 7711855 chr3L 7711908 7711931 4 76 0.5 4.0 2.2 1.2 99 chr3L 7711832 intron,intron CG32373 +,Ank2 - chr3L 7711882 intron,intron CG32373 +,Ank2 - chr3L 7711931 intron,intron CG32373 +,Ank2 - chr3L_4_7710001 chr3L_7710001 RAL-799 735 chr3L 7749470 7749470 chr3L 11777678 11777678 4 4028208 11.5 17.0 14.2 0.3 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-799 736 chr3L 7749471 7749471 chr3L 11777678 11777678 4 4028207 11.5 17.0 14.2 0.3 4028207 chr3L 7749471 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-799 737 chr3L 7793713 7793732 chr3L 7800765 7800784 297 6 7052 1.5 1.5 1.5 2.4 7071 chr3L 7793713 intron CG32369 - chr3L 7797248 intron CG32369 - chr3L 7800784 intron CG32369 - chr3L_6_7795001 chr3L_7795001 RAL-799 738 chr3L 7886520 7886547 chr3L 7889038 7889065 Stalker4 5 2518 1.5 4.5 3.0 1.2 2545 chr3L 7886520 intron CG32365 + chr3L 7887792 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-799 739 chr3L 7903059 7903093 chr3L 7903141 7903175 7 82 0.5 1.0 0.8 3.9 116 chr3L 7903059 intron pbl - chr3L 7903117 intron pbl - chr3L 7903175 intron pbl - chr3L_7_7900001 chr3L_7900001 RAL-799 740 chr3L 7916847 7916857 chr3L 7926018 7926028 roo 5 9171 0.5 2.5 1.5 2.0 9181 chr3L 7916847 3` UTR syd - chr3L 7921438 intron syd - chr3L 7926028 3` UTR syd - chr3L_5_7920001 chr3L_7920001 RAL-799 741 chr3L 7990854 7990886 chr3L 7990942 7990976 4 90 0.0 0.5 0.2 3.3 122 chr3L 7990854 intron nmo + chr3L 7990915 intron nmo + chr3L 7990976 intron nmo + chr3L_4_7990001 chr3L_7990001 RAL-799 742 chr3L 8317591 8317596 chr3L 22908066 22908067 4 14590472 0.0 21.5 10.8 0.3 14590476 chr3L 8317591 intergenic not near genes chr3L 15612829 intergenic CG13449 -,comm3 - chr3L 22908067 intergenic not near genes chr3L_4_15610001 chr3L_15610001 RAL-799 743 chr3L 8376654 8376679 chr3L 8376874 8376898 5 220 1.5 2.5 2.0 1.7 244 chr3L 8376654 intron ImpE1 + chr3L 8376776 intron ImpE1 + chr3L 8376898 intron ImpE1 + chr3L_5_8375001 chr3L_8375001 RAL-799 744 chr3L 8383980 8384005 chr3L 8384061 8384086 5 77 1.0 4.0 2.5 1.4 106 chr3L 8383980 intron ImpE1 + chr3L 8384033 intron ImpE1 + chr3L 8384086 intron ImpE1 + chr3L_5_8380001 chr3L_8380001 RAL-799 745 chr3L 8481774 8481802 chr3L 8490933 8490961 roo 9 9158 1.0 3.0 2.0 3.0 9187 chr3L 8481774 intron CG43163 - chr3L 8486368 intron CG43163 - chr3L 8490961 intron CG43163 - chr3L_9_8485001 chr3L_8485001 RAL-799 746 chr3L 8498299 8498325 chr3L 8505766 8505792 blood 6 7467 3.5 2.0 2.8 1.6 7493 chr3L 8498299 intron CG43163 - chr3L 8502046 intron CG43163 - chr3L 8505792 intron CG43163 - chr3L_6_8500001 chr3L_8500001 RAL-799 747 chr3L 8576981 8577001 chr3L 8577061 8577085 5 83 1.5 3.0 2.2 1.6 104 chr3L 8576981 5` UTR CG43078 + chr3L 8577033 5` UTR CG43078 + chr3L 8577085 5` UTR CG43078 + chr3L_5_8575001 chr3L_8575001 RAL-799 748 chr3L 8791280 8791288 chr3L 8796698 8796708 I-element 6 5420 4.0 0.0 2.0 2.0 5428 chr3L 8791280 exon Fhos + chr3L 8793994 intron Fhos + chr3L 8796708 intron Fhos + chr3L_6_8790001 chr3L_8790001 RAL-799 749 chr3L 8950548 8950582 chr3L 8950642 8950676 10 94 0.5 2.0 1.2 4.5 128 chr3L 8950548 intron,intron CG43783 -,orb2 - chr3L 8950612 intron,intron CG43783 -,orb2 - chr3L 8950676 intron,intron CG43783 -,orb2 - chr3L_10_8950001 chr3L_8950001 RAL-799 750 chr3L 9076935 9076950 chr3L 9084495 9084510 412 9 7559 6.5 3.0 4.8 1.6 7575 chr3L 9076935 exon Tequila + chr3L 9080722 intron Tequila + chr3L 9084510 exon Tequila + chr3L_9_9080001 chr3L_9080001 RAL-799 751 chr3L 9129443 9129468 chr3L 9129556 9129581 9 113 3.0 2.5 2.8 2.4 138 chr3L 9129443 intron bol - chr3L 9129512 intron bol - chr3L 9129581 intron bol - chr3L_9_9125001 chr3L_9125001 RAL-799 752 chr3L 9130565 9130577 chr3L 9134326 9134337 412 4 3761 3.5 4.5 4.0 0.8 3772 chr3L 9130565 intergenic bol - chr3L 9132451 intergenic not near genes chr3L 9134337 intergenic Dhpr + chr3L_4_9130001 chr3L_9130001 RAL-799 753 chr3L 9164705 9164727 chr3L 9166172 9166190 hobo 5 1466 3.5 0.0 1.8 1.8 1485 chr3L 9164705 intron Rdl - chr3L 9165448 intron Rdl - chr3L 9166190 intron Rdl - chr3L_5_9165001 chr3L_9165001 RAL-799 754 chr3L 9219243 9219281 chr3L 9219915 9219925 jockey 10 668 4.0 3.0 3.5 2.2 682 chr3L 9219243 intergenic not near genes chr3L 9219584 intergenic not near genes chr3L 9219925 intergenic not near genes chr3L_10_9215001 chr3L_9215001 RAL-799 755 chr3L 9344200 9344220 chr3L 9344278 9344297 12 78 0.0 3.5 1.8 4.3 97 chr3L 9344200 intron PGRP-LC + chr3L 9344248 intron PGRP-LC + chr3L 9344297 intron PGRP-LC + chr3L_12_9340001 chr3L_9340001 RAL-799 756 chr3L 9359591 9359620 chr3L 9359682 9359711 5 91 3.0 1.5 2.2 1.6 120 chr3L 9359591 3` UTR CG32039 + chr3L 9359651 3` UTR CG32039 + chr3L 9359711 3` UTR CG32039 + chr3L_5_9355001 chr3L_9355001 RAL-799 757 chr3L 9443526 9443539 chr3L 9445317 9445330 S-element 4 1790 1.0 1.5 1.2 1.8 1804 chr3L 9443526 intron CG33926 + chr3L 9444428 intron CG33926 + chr3L 9445330 intron CG33926 + chr3L_4_9440001 chr3L_9440001 RAL-799 758 chr3L 9575911 9575935 chr3L 9580989 9581013 jockey 12 5077 2.5 3.0 2.8 3.2 5102 chr3L 9575911 intron CG42673 + chr3L 9578462 intron CG42673 + chr3L 9581013 intron CG42673 + chr3L_12_9575001 chr3L_9575001 RAL-799 759 chr3L 9637853 9637886 chr3L 9637935 9637968 16 82 4.0 2.0 3.0 4.0 115 chr3L 9637853 intron fry - chr3L 9637910 intron fry - chr3L 9637968 intron fry - chr3L_16_9635001 chr3L_9635001 RAL-799 760 chr3L 9639038 9639053 chr3L 9639123 9639138 6 85 0.0 4.0 2.0 2.0 100 chr3L 9639038 intron fry - chr3L 9639088 intron fry - chr3L 9639138 intron fry - chr3L_6_9635001 chr3L_9635001 RAL-799 761 chr3L 9652785 9652810 chr3L 9652997 9653022 6 212 1.5 1.5 1.5 2.4 237 chr3L 9652785 intron,intron fry -,CG33696 + chr3L 9652904 intron,intron fry -,CG33696 + chr3L 9653022 intron,intron fry -,CG33696 + chr3L_6_9650001 chr3L_9650001 RAL-799 762 chr3L 9842989 9842990 chr3L 22908066 22908066 4 13065077 5.5 21.5 13.5 0.3 13065077 chr3L 9842989 intron RasGAP1 - chr3L 16375528 exon roq - chr3L 22908066 intergenic not near genes chr3L_4_16375001 chr3L_16375001 RAL-799 763 chr3L 9966786 9966813 chr3L 9970296 9970322 7 3509 25.0 22.0 23.5 0.3 3536 chr3L 9966786 3` UTR,3` UTR CG34356 +,CG6685 - chr3L 9968554 5` UTR Nc + chr3L 9970322 exon Nc + chr3L_7_9965001 chr3L_9965001 RAL-799 764 chr3L 9990517 9990530 chr3L 9990621 9990622 4 101 1.5 2.5 2.0 1.3 105 chr3L 9990517 intron dpr6 + chr3L 9990570 intron dpr6 + chr3L 9990622 intron dpr6 + chr3L_4_9990001 chr3L_9990001 RAL-799 765 chr3L 10011594 10011621 chr3L 10011675 10011703 8 82 2.5 2.5 2.5 2.3 109 chr3L 10011594 intron dpr6 + chr3L 10011648 intron dpr6 + chr3L 10011703 intron dpr6 + chr3L_8_10010001 chr3L_10010001 RAL-799 766 chr3L 10120278 10120311 chr3L 10120370 10120404 10 90 3.0 3.0 3.0 2.5 126 chr3L 10120278 intron dpr6 + chr3L 10120341 intron dpr6 + chr3L 10120404 intron dpr6 + chr3L_10_10120001 chr3L_10120001 RAL-799 767 chr3L 10204078 10204093 chr3L 10204217 10204233 7 140 1.0 0.5 0.8 3.9 155 chr3L 10204078 intergenic not near genes chr3L 10204156 intergenic not near genes chr3L 10204233 intergenic not near genes chr3L_7_10200001 chr3L_10200001 RAL-799 768 chr3L 10214815 10214829 chr3L 10214917 10214931 5 102 0.0 2.0 1.0 2.5 116 chr3L 10214815 intergenic not near genes chr3L 10214873 intergenic not near genes chr3L 10214931 intergenic not near genes chr3L_5_10210001 chr3L_10210001 RAL-799 769 chr3L 10281717 10281733 chr3L 10281835 10281851 5 118 2.0 0.5 1.2 2.3 134 chr3L 10281717 intergenic not near genes chr3L 10281784 intergenic not near genes chr3L 10281851 intergenic not near genes chr3L_5_10280001 chr3L_10280001 RAL-799 770 chr3L 10298679 10298701 chr3L 10298766 10298788 4 87 0.5 1.5 1.0 2.0 109 chr3L 10298679 intergenic not near genes chr3L 10298734 intergenic not near genes chr3L 10298788 intergenic not near genes chr3L_4_10295001 chr3L_10295001 RAL-799 771 chr3L 10308752 10308774 chr3L 10308829 10308851 6 77 2.0 1.5 1.8 2.1 99 chr3L 10308752 intergenic not near genes chr3L 10308802 intergenic not near genes chr3L 10308851 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-799 772 chr3L 10414944 10414975 chr3L 10417316 10417347 Doc 5 2372 0.5 3.0 1.8 1.8 2403 chr3L 10414944 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-799 773 chr3L 10417568 10417603 chr3L 10417645 10417680 8 77 2.0 1.0 1.5 3.2 112 chr3L 10417568 intergenic not near genes chr3L 10417624 intergenic not near genes chr3L 10417680 intergenic not near genes chr3L_8_10415001 chr3L_10415001 RAL-799 774 chr3L 10460006 10460036 chr3L 10460083 10460112 10 76 3.0 4.0 3.5 2.2 106 chr3L 10460006 exon Gem3 - chr3L 10460059 exon Gem3 - chr3L 10460112 exon Gem3 - chr3L_10_10460001 chr3L_10460001 RAL-799 775 chr3L 10518586 10518608 chr3L 10518721 10518743 6 135 2.0 1.0 1.5 2.4 157 chr3L 10518586 intron A2bp1 + chr3L 10518664 intron A2bp1 + chr3L 10518743 intron A2bp1 + chr3L_6_10515001 chr3L_10515001 RAL-799 776 chr3L 10526635 10526647 chr3L 10526716 10526728 4 80 3.0 4.0 3.5 0.9 93 chr3L 10526635 intron A2bp1 + chr3L 10526682 intron A2bp1 + chr3L 10526728 intron A2bp1 + chr3L_4_10525001 chr3L_10525001 RAL-799 777 chr3L 10563276 10563290 chr3L 10563339 10563346 6 69 2.5 1.5 2.0 2.0 70 chr3L 10563276 intron A2bp1 + chr3L 10563311 intron A2bp1 + chr3L 10563346 intron A2bp1 + chr3L_6_10560001 chr3L_10560001 RAL-799 778 chr3L 10611308 10611342 chr3L 10611384 10611418 10 73 1.0 1.0 1.0 5.0 110 chr3L 10611308 intergenic not near genes chr3L 10611363 intergenic not near genes chr3L 10611418 intergenic not near genes chr3L_10_10610001 chr3L_10610001 RAL-799 779 chr3L 10658085 10658210 chr3L 10658162 10658333 11 108 0.0 0.0 0.0 11.0 248 chr3L 10658085 intron CG32066 - chr3L 10658209 intron CG32066 - chr3L 10658333 intron CG32066 - chr3L_11_10655001 chr3L_10655001 RAL-799 780 chr3L 10762830 10762856 chr3L 10762914 10762939 9 84 3.5 2.5 3.0 2.2 109 chr3L 10762830 intergenic not near genes chr3L 10762884 intergenic not near genes chr3L 10762939 intergenic not near genes chr3L_9_10760001 chr3L_10760001 RAL-799 781 chr3L 10851234 10851238 chr3L 22908066 22908066 5 12056830 6.5 21.5 14.0 0.3 12056832 chr3L 10851234 intergenic not near genes chr3L 16879650 intron Lmpt + chr3L 22908066 intergenic not near genes chr3L_5_16875001 chr3L_16875001 RAL-799 782 chr3L 10942059 10942073 chr3L 10942142 10942155 4 82 0.5 2.0 1.2 1.8 96 chr3L 10942059 intergenic not near genes chr3L 10942107 intergenic not near genes chr3L 10942155 intergenic not near genes chr3L_4_10940001 chr3L_10940001 RAL-799 783 chr3L 11105299 11105327 chr3L 11107010 11107038 X-element 5 1711 2.5 4.5 3.5 1.1 1739 chr3L 11105299 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107038 exon CG32073 - chr3L_5_11105001 chr3L_11105001 RAL-799 784 chr3L 11127210 11127296 chr3L 11127287 11127373 4 77 0.0 0.0 0.0 4.0 163 chr3L 11127210 intron CG42575 + chr3L 11127292 intron CG42575 + chr3L 11127373 intron CG42575 + chr3L_4_11125001 chr3L_11125001 RAL-799 785 chr3L 11131807 11131820 chr3L 11132071 11132083 4 264 0.0 7.0 3.5 0.9 276 chr3L 11131807 intron CG42575 + chr3L 11131945 intron,3` UTR CG42575 +,CG32074 - chr3L 11132083 intron,exon CG42575 +,CG32074 - chr3L_4_11130001 chr3L_11130001 RAL-799 786 chr3L 11245102 11245121 chr3L 11245181 11245213 9 87 2.5 1.5 2.0 3.0 111 chr3L 11245102 intergenic not near genes chr3L 11245158 intergenic not near genes chr3L 11245213 intergenic not near genes chr3L_9_11245001 chr3L_11245001 RAL-799 787 chr3L 11290629 11290652 chr3L 11290952 11290975 7 322 1.5 1.0 1.2 3.2 346 chr3L 11290629 intron CG6175 - chr3L 11290802 intron CG6175 - chr3L 11290975 intron CG6175 - chr3L_7_11290001 chr3L_11290001 RAL-799 788 chr3L 11305796 11305808 chr3L 22908066 22908066 9 11602262 2.5 21.5 12.0 0.7 11602270 chr3L 11305796 intergenic not near genes chr3L 17106931 intron Rbp6 - chr3L 22908066 intergenic not near genes chr3L_9_17105001 chr3L_17105001 RAL-799 789 chr3L 11329689 11329726 chr3L 11332894 11332900 jockey 5 3198 2.5 1.5 2.0 1.7 3211 chr3L 11329689 intergenic not near genes chr3L 11331294 intergenic not near genes chr3L 11332900 intergenic not near genes chr3L_5_11330001 chr3L_11330001 RAL-799 790 chr3L 11381579 11381598 chr3L 11381773 11381792 7 194 2.0 1.0 1.5 2.8 213 chr3L 11381579 intergenic not near genes chr3L 11381686 intergenic not near genes chr3L 11381792 intergenic not near genes chr3L_7_11380001 chr3L_11380001 RAL-799 791 chr3L 11435563 11435587 chr3L 11435730 11435754 8 168 3.5 2.0 2.8 2.1 191 chr3L 11435563 intergenic CR44548 +,CG6149 - chr3L 11435658 5` UTR CR44548 + chr3L 11435754 5` UTR CR44548 + chr3L_8_11435001 chr3L_11435001 RAL-799 792 chr3L 11564790 11564811 chr3L 11572415 11572435 412 4 7625 3.5 2.5 3.0 1.0 7645 chr3L 11564790 exon CG33267 + chr3L 11568612 intron CG33267 + chr3L 11572435 exon CG33267 + chr3L_4_11565001 chr3L_11565001 RAL-799 793 chr3L 11579555 11579584 chr3L 11579661 11579690 6 106 2.0 2.0 2.0 2.0 135 chr3L 11579555 intergenic CG43390 - chr3L 11579622 intergenic CG43390 - chr3L 11579690 intergenic CG43390 - chr3L_6_11575001 chr3L_11575001 RAL-799 794 chr3L 11588742 11588758 chr3L 11588888 11588914 6 154 0.5 1.0 0.8 3.3 172 chr3L 11588742 intergenic not near genes chr3L 11588828 intergenic not near genes chr3L 11588914 intergenic not near genes chr3L_6_11585001 chr3L_11585001 RAL-799 795 chr3L 11596217 11596236 chr3L 11596300 11596319 5 83 1.5 1.0 1.2 2.3 102 chr3L 11596217 intergenic not near genes chr3L 11596268 intergenic not near genes chr3L 11596319 intergenic not near genes chr3L_5_11595001 chr3L_11595001 RAL-799 796 chr3L 11723081 11723116 chr3L 11727876 11727911 Doc 4 4794 1.0 2.0 1.5 1.6 4830 chr3L 11723081 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727911 3` UTR Bmcp + chr3L_4_11725001 chr3L_11725001 RAL-799 797 chr3L 11729684 11729704 chr3L 11729760 11729780 6 76 2.5 1.5 2.0 2.0 96 chr3L 11729684 exon CG32088 + chr3L 11729732 intron CG32088 + chr3L 11729780 exon CG32088 + chr3L_6_11725001 chr3L_11725001 RAL-799 798 chr3L 11744014 11744039 chr3L 11744121 11744147 5 108 4.0 0.0 2.0 1.7 133 chr3L 11744014 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744147 intron CG6024 - chr3L_5_11740001 chr3L_11740001 RAL-799 799 chr3L 802566 802566 chr3L 11777678 11777678 8 10975112 14.5 17.0 15.8 0.5 10975112 chr3L 802566 intergenic not near genes chr3L 6290122 intergenic not near genes chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_8_6290001 chr3L_6290001 RAL-799 800 chr3L 11867414 11867440 chr3L 11867495 11867522 4 81 0.5 2.5 1.5 1.6 108 chr3L 11867414 intron CG44837 - chr3L 11867468 intron CG44837 - chr3L 11867522 intron CG44837 - chr3L_4_11865001 chr3L_11865001 RAL-799 801 chr3L 11943493 11943518 chr3L 11943594 11943619 5 101 1.0 0.5 0.8 2.8 126 chr3L 11943493 intergenic Rpt4R +,CG5883 - chr3L 11943556 intergenic Rpt4R +,CG5883 - chr3L 11943619 intergenic CG5883 -,Rpt4R + chr3L_5_11940001 chr3L_11940001 RAL-799 802 chr3L 12013911 12013937 chr3L 12014002 12014028 12 91 4.0 1.0 2.5 3.4 117 chr3L 12013911 intron rols - chr3L 12013970 intron rols - chr3L 12014028 intron rols - chr3L_12_12010001 chr3L_12010001 RAL-799 803 chr3L 12046101 12046115 chr3L 12046162 12046193 6 75 4.5 3.5 4.0 1.2 92 chr3L 12046101 intron rols - chr3L 12046147 intron rols - chr3L 12046193 intron rols - chr3L_6_12045001 chr3L_12045001 RAL-799 804 chr3L 12052704 12052736 chr3L 12052793 12052825 7 89 2.5 1.0 1.8 2.5 121 chr3L 12052704 intron rols - chr3L 12052764 intron rols - chr3L 12052825 intron rols - chr3L_7_12050001 chr3L_12050001 RAL-799 805 chr3L 12083928 12083948 chr3L 12084112 12084132 5 184 16.5 0.0 8.2 0.5 204 chr3L 12083928 intergenic not near genes chr3L 12084030 intergenic not near genes chr3L 12084132 intergenic not near genes chr3L_5_12080001 chr3L_12080001 RAL-799 806 chr3L 12089081 12089112 chr3L 12089160 12089192 6 80 1.0 1.0 1.0 3.0 111 chr3L 12089081 3` UTR CG17154 + chr3L 12089136 3` UTR CG17154 + chr3L 12089192 3` UTR CG17154 + chr3L_6_12085001 chr3L_12085001 RAL-799 807 chr3L 12219568 12219595 chr3L 12219648 12219678 6 82 3.5 6.0 4.8 1.0 110 chr3L 12219568 intron app - chr3L 12219623 intron app - chr3L 12219678 intron app - chr3L_6_12215001 chr3L_12215001 RAL-799 808 chr3L 12286817 12286841 chr3L 12286896 12286921 9 80 2.0 2.0 2.0 3.0 104 chr3L 12286817 intergenic not near genes chr3L 12286869 intergenic not near genes chr3L 12286921 intergenic not near genes chr3L_9_12285001 chr3L_12285001 RAL-799 809 chr3L 12369534 12369567 chr3L 12369624 12369657 8 90 2.5 1.0 1.8 2.9 123 chr3L 12369534 intron Ncc69 - chr3L 12369596 intron Ncc69 - chr3L 12369657 intron Ncc69 - chr3L_8_12365001 chr3L_12365001 RAL-799 810 chr3L 12435583 12435600 chr3L 12435657 12435676 8 75 4.0 4.0 4.0 1.6 93 chr3L 12435583 intergenic not near genes chr3L 12435630 intergenic not near genes chr3L 12435676 intergenic not near genes chr3L_8_12435001 chr3L_12435001 RAL-799 811 chr3L 12460316 12460340 chr3L 12460393 12460417 4 77 0.0 2.5 1.2 1.8 101 chr3L 12460316 intergenic not near genes chr3L 12460366 intergenic not near genes chr3L 12460417 intergenic not near genes chr3L_4_12460001 chr3L_12460001 RAL-799 812 chr3L 12467257 12467284 chr3L 12467341 12467368 5 85 0.0 1.5 0.8 2.8 111 chr3L 12467257 intron eyg - chr3L 12467312 intron eyg - chr3L 12467368 intron eyg - chr3L_5_12465001 chr3L_12465001 RAL-799 813 chr3L 12504112 12504138 chr3L 12504196 12504219 5 83 0.0 2.5 1.2 2.3 107 chr3L 12504112 intergenic vih +,CG10646 - chr3L 12504166 intergenic vih +,CG10646 - chr3L 12504219 intergenic vih +,CG10646 - chr3L_5_12500001 chr3L_12500001 RAL-799 814 chr3L 11777678 11777678 chr3L 12638619 12638625 5 860943 14.5 9.0 11.8 0.4 860947 chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L 12208152 intron app - chr3L 12638625 intron CR32111 + chr3L_5_12205001 chr3L_12205001 RAL-799 815 chr3L 12643258 12643291 chr3L 12643422 12643458 10 166 1.5 2.5 2.0 3.3 200 chr3L 12643258 intron CR32111 + chr3L 12643358 intron CR32111 + chr3L 12643458 intron CR32111 + chr3L_10_12640001 chr3L_12640001 RAL-799 816 chr3L 12647954 12647976 chr3L 12648030 12648052 5 76 1.0 2.0 1.5 2.0 98 chr3L 12647954 5` UTR CR32111 + chr3L 12648003 5` UTR CR32111 + chr3L 12648052 5` UTR CR32111 + chr3L_5_12645001 chr3L_12645001 RAL-799 817 chr3L 12706642 12706654 chr3L 12706769 12706781 4 127 2.0 1.5 1.8 1.4 139 chr3L 12706642 intron mirr + chr3L 12706712 intron mirr + chr3L 12706781 intron mirr + chr3L_4_12705001 chr3L_12705001 RAL-799 818 chr3L 12874930 12874962 chr3L 12877215 12877254 jockey 7 2291 1.0 0.5 0.8 3.9 2324 chr3L 12874930 intergenic not near genes chr3L 12876092 intergenic not near genes chr3L 12877254 intergenic not near genes chr3L_7_12875001 chr3L_12875001 RAL-799 819 chr3L 12894802 12894816 chr3L 12894880 12894894 7 78 7.0 8.0 7.5 0.8 92 chr3L 12894802 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894894 intergenic CG14118 + chr3L_7_12890001 chr3L_12890001 RAL-799 820 chr3L 12896237 12896261 chr3L 12896313 12896322 7 75 5.5 0.5 3.0 1.8 85 chr3L 12896237 intergenic not near genes chr3L 12896280 intergenic not near genes chr3L 12896322 intergenic not near genes chr3L_7_12895001 chr3L_12895001 RAL-799 821 chr3L 12898889 12898904 chr3L 12898963 12898980 4 74 2.0 3.5 2.8 1.1 91 chr3L 12898889 intergenic not near genes chr3L 12898934 intergenic not near genes chr3L 12898980 intergenic not near genes chr3L_4_12895001 chr3L_12895001 RAL-799 822 chr3L 12957803 12957818 chr3L 12962285 12962300 copia 4 4482 1.0 1.5 1.2 1.8 4497 chr3L 12957803 intergenic not near genes chr3L 12960052 intergenic not near genes chr3L 12962300 intergenic not near genes chr3L_4_12960001 chr3L_12960001 RAL-799 823 chr3L 13074039 13074072 chr3L 13074172 13074205 8 133 2.0 1.0 1.5 3.2 166 chr3L 13074039 intergenic not near genes chr3L 13074122 intergenic not near genes chr3L 13074205 intergenic not near genes chr3L_8_13070001 chr3L_13070001 RAL-799 824 chr3L 13085056 13085085 chr3L 13085134 13085164 6 78 0.5 2.0 1.2 2.7 108 chr3L 13085056 intergenic not near genes chr3L 13085110 intergenic not near genes chr3L 13085164 intergenic not near genes chr3L_6_13085001 chr3L_13085001 RAL-799 825 chr3L 13301253 13301277 chr3L 13301335 13301359 4 82 0.0 0.0 0.0 4.0 106 chr3L 13301253 intergenic SP + chr3L 13301306 intergenic SP + chr3L 13301359 intergenic SP + chr3L_4_13300001 chr3L_13300001 RAL-799 826 chr3L 13361777 13361804 chr3L 13361862 13361889 9 85 3.0 2.0 2.5 2.6 112 chr3L 13361777 intergenic not near genes chr3L 13361833 intergenic not near genes chr3L 13361889 intergenic not near genes chr3L_9_13360001 chr3L_13360001 RAL-799 827 chr3L 13477014 13477026 chr3L 13477091 13477103 4 77 0.0 1.5 0.8 2.2 89 chr3L 13477014 intergenic not near genes chr3L 13477058 intergenic stv + chr3L 13477103 intergenic stv + chr3L_4_13475001 chr3L_13475001 RAL-799 828 chr3L 13525155 13525190 chr3L 13532950 13532986 roo 10 7796 2.5 5.0 3.8 2.1 7831 chr3L 13525155 intergenic not near genes chr3L 13529070 intergenic not near genes chr3L 13532986 intergenic not near genes chr3L_10_13525001 chr3L_13525001 RAL-799 829 chr3L 13626691 13626712 chr3L 13626774 13626796 4 83 2.5 0.5 1.5 1.6 105 chr3L 13626691 intron bru-3 - chr3L 13626744 intron bru-3 - chr3L 13626796 intron bru-3 - chr3L_4_13625001 chr3L_13625001 RAL-799 830 chr3L 13629529 13629546 chr3L 13629640 13629657 5 111 2.5 8.0 5.2 0.8 128 chr3L 13629529 intron bru-3 - chr3L 13629593 intron bru-3 - chr3L 13629657 intron bru-3 - chr3L_5_13625001 chr3L_13625001 RAL-799 831 chr3L 13633414 13633442 chr3L 13633768 13633796 15 353 2.0 1.5 1.8 5.4 382 chr3L 13633414 intron bru-3 - chr3L 13633605 intron bru-3 - chr3L 13633796 intron bru-3 - chr3L_15_13630001 chr3L_13630001 RAL-799 832 chr3L 13648885 13648920 chr3L 13648975 13649010 7 90 1.5 2.0 1.8 2.5 125 chr3L 13648885 intron bru-3 - chr3L 13648948 intron bru-3 - chr3L 13649010 intron bru-3 - chr3L_7_13645001 chr3L_13645001 RAL-799 833 chr3L 13677535 13677558 chr3L 13677612 13677635 7 77 0.5 1.0 0.8 3.9 100 chr3L 13677535 intron bru-3 - chr3L 13677585 intron bru-3 - chr3L 13677635 intron bru-3 - chr3L_7_13675001 chr3L_13675001 RAL-799 834 chr3L 13774638 13774669 chr3L 13774723 13774744 5 84 3.0 4.0 3.5 1.1 106 chr3L 13774638 intron bru-3 - chr3L 13774691 intron bru-3 - chr3L 13774744 intron bru-3 - chr3L_5_13770001 chr3L_13770001 RAL-799 835 chr3L 13804545 13804579 chr3L 13822831 13822865 roo 9 18286 0.5 2.5 1.5 3.6 18320 chr3L 13804545 intergenic not near genes chr3L 13813705 intergenic not near genes chr3L 13822865 intergenic not near genes chr3L_9_13810001 chr3L_13810001 RAL-799 836 chr3L 13901570 13901601 chr3L 13901647 13901678 12 76 1.0 3.0 2.0 4.0 108 chr3L 13901570 intron dysc - chr3L 13901624 intron dysc - chr3L 13901678 intron dysc - chr3L_12_13900001 chr3L_13900001 RAL-799 837 chr3L 13920420 13920431 chr3L 13920500 13920511 4 80 1.0 1.5 1.2 1.8 91 chr3L 13920420 intron Rgl - chr3L 13920466 intron Rgl - chr3L 13920511 intron Rgl - chr3L_4_13920001 chr3L_13920001 RAL-799 838 chr3L 14118947 14118963 chr3L 14119039 14119056 9 92 3.0 4.5 3.8 1.9 109 chr3L 14118947 intron Sox21b - chr3L 14119002 intron Sox21b - chr3L 14119056 intron Sox21b - chr3L_9_14115001 chr3L_14115001 RAL-799 839 chr3L 14185156 14185187 chr3L 14185231 14185263 6 76 0.0 2.0 1.0 3.0 107 chr3L 14185156 intergenic not near genes chr3L 14185210 intergenic not near genes chr3L 14185263 intergenic not near genes chr3L_6_14185001 chr3L_14185001 RAL-799 840 chr3L 14245569 14245591 chr3L 14245663 14245685 1360 9 93 4.0 2.5 3.2 2.1 116 chr3L 14245569 3` UTR CR44561 - chr3L 14245627 3` UTR CR44561 - chr3L 14245685 3` UTR CR44561 - chr3L_9_14245001 chr3L_14245001 RAL-799 841 chr3L 14267198 14267214 chr3L 14267276 14267292 4 78 2.5 1.0 1.8 1.4 94 chr3L 14267198 intergenic not near genes chr3L 14267245 intergenic not near genes chr3L 14267292 intergenic not near genes chr3L_4_14265001 chr3L_14265001 RAL-799 842 chr3L 14295984 14296002 chr3L 14296470 14296488 roo 5 486 5.5 1.5 3.5 1.1 504 chr3L 14295984 intron fz + chr3L 14296236 intron fz + chr3L 14296488 intron fz + chr3L_5_14295001 chr3L_14295001 RAL-799 843 chr3L 14312028 14312055 chr3L 14316834 14316846 X-element 5 4808 4.0 0.5 2.2 1.6 4818 chr3L 14312028 exon fz + chr3L 14314437 intron fz + chr3L 14316846 intron fz + chr3L_5_14310001 chr3L_14310001 RAL-799 844 chr3L 14370025 14370043 chr3L 14370106 14370122 4 78 1.5 2.5 2.0 1.3 97 chr3L 14370025 intergenic CG13481 - chr3L 14370074 intergenic CG13481 - chr3L 14370122 intergenic CG13481 - chr3L_4_14370001 chr3L_14370001 RAL-799 845 chr3L 14411874 14411896 chr3L 14411952 14411975 5 79 2.0 1.5 1.8 1.8 101 chr3L 14411874 intron CG3919 + chr3L 14411924 intron CG3919 + chr3L 14411975 intron CG3919 + chr3L_5_14410001 chr3L_14410001 RAL-799 846 chr3L 14468449 14468477 chr3L 14473653 14473683 copia 5 5206 2.0 1.0 1.5 2.0 5234 chr3L 14468449 intron bbg - chr3L 14471066 intron bbg - chr3L 14473683 intron bbg - chr3L_5_14470001 chr3L_14470001 RAL-799 847 chr3L 14514693 14514696 chr3L 22908066 22908067 Stalker2 5 8393373 10.0 21.5 15.8 0.3 8393374 chr3L 14514693 intron bbg - chr3L 18711380 intergenic not near genes chr3L 22908067 intergenic not near genes chr3L_5_18710001 chr3L_18710001 RAL-799 848 chr3L 14546609 14546803 chr3L 14546687 14546884 7 80 0.0 2.0 1.0 3.5 275 chr3L 14546609 intron CG9238 - chr3L 14546746 intron CG9238 - chr3L 14546884 intron CG9238 - chr3L_7_14545001 chr3L_14545001 RAL-799 849 chr3L 14602991 14603080 chr3L 14603079 14603156 4 82 0.0 0.0 0.0 4.0 165 chr3L 14602991 intergenic not near genes chr3L 14603074 intergenic not near genes chr3L 14603156 intergenic not near genes chr3L_4_14600001 chr3L_14600001 RAL-799 850 chr3L 14635706 14635733 chr3L 14635784 14635812 4 79 1.0 1.5 1.2 1.8 106 chr3L 14635706 intron dlp + chr3L 14635759 intron dlp + chr3L 14635812 intron dlp + chr3L_4_14635001 chr3L_14635001 RAL-799 851 chr3L 14719779 14719809 chr3L 14719862 14719892 10 81 3.5 3.0 3.2 2.4 113 chr3L 14719779 intron ome + chr3L 14719836 intron ome + chr3L 14719892 intron ome + chr3L_10_14715001 chr3L_14715001 RAL-799 852 chr3L 14721186 14721202 chr3L 14723027 14723044 Rt1c 4 1841 6.0 4.5 5.2 0.6 1858 chr3L 14721186 intron ome + chr3L 14722115 intron ome + chr3L 14723044 intron ome + chr3L_4_14720001 chr3L_14720001 RAL-799 853 chr3L 14861803 14861835 chr3L 14861883 14861915 5 79 2.5 2.0 2.2 1.6 112 chr3L 14861803 intron CG17839 + chr3L 14861859 intron CG17839 + chr3L 14861915 intron CG17839 + chr3L_5_14860001 chr3L_14860001 RAL-799 854 chr3L 14913908 14913931 chr3L 14913982 14914007 6 76 3.0 1.5 2.2 1.9 99 chr3L 14913908 intron DCX-EMAP + chr3L 14913958 intron DCX-EMAP + chr3L 14914007 intron DCX-EMAP + chr3L_6_14910001 chr3L_14910001 RAL-799 855 chr3L 14917667 14917695 chr3L 14917750 14917778 9 81 0.5 3.0 1.8 3.2 111 chr3L 14917667 intron DCX-EMAP + chr3L 14917722 intron DCX-EMAP + chr3L 14917778 intron DCX-EMAP + chr3L_9_14915001 chr3L_14915001 RAL-799 856 chr3L 14922102 14922127 chr3L 14922210 14922233 6 108 3.5 1.5 2.5 1.7 131 chr3L 14922102 intron DCX-EMAP + chr3L 14922168 intron DCX-EMAP + chr3L 14922233 intron DCX-EMAP + chr3L_6_14920001 chr3L_14920001 RAL-799 857 chr3L 14959998 14960016 chr3L 14960081 14960100 6 84 1.0 0.5 0.8 3.3 102 chr3L 14959998 intergenic not near genes chr3L 14960049 intergenic not near genes chr3L 14960100 intergenic not near genes chr3L_6_14960001 chr3L_14960001 RAL-799 858 chr3L 15035156 15035182 chr3L 15038016 15038042 10 2860 2.0 1.5 1.8 3.6 2886 chr3L 15035156 intron Sytbeta - chr3L 15036599 intron Sytbeta - chr3L 15038042 intron Sytbeta - chr3L_10_15035001 chr3L_15035001 RAL-799 859 chr3L 15048119 15048130 chr3L 15048483 15048494 4 364 13.5 11.0 12.2 0.3 375 chr3L 15048119 intron Sytbeta - chr3L 15048306 intron Sytbeta - chr3L 15048494 intron Sytbeta - chr3L_4_15045001 chr3L_15045001 RAL-799 860 chr3L 15063698 15063701 chr3L 22908066 22908066 4 7844366 8.5 21.5 15.0 0.2 7844368 chr3L 15063698 intron Sytbeta - chr3L 18985882 intergenic CG11619 -,CG14075 + chr3L 22908066 intergenic not near genes chr3L_4_18985001 chr3L_18985001 RAL-799 861 chr3L 15128771 15128784 chr3L 15128935 15128947 7 164 3.5 8.5 6.0 1.0 176 chr3L 15128771 exon CG13457 - chr3L 15128859 exon CG13457 - chr3L 15128947 exon CG13457 - chr3L_7_15125001 chr3L_15125001 RAL-799 862 chr3L 15209071 15209093 chr3L 15209153 15209179 4 85 1.0 1.5 1.2 1.8 108 chr3L 15209071 intergenic CG6888 + chr3L 15209125 intergenic not near genes chr3L 15209179 intergenic not near genes chr3L_4_15205001 chr3L_15205001 RAL-799 863 chr3L 15261721 15261724 chr3L 22908066 22908067 4 7646343 3.5 21.5 12.5 0.3 7646346 chr3L 15261721 intergenic not near genes chr3L 19084894 intron Mkp3 - chr3L 22908067 intergenic not near genes chr3L_4_19080001 chr3L_19080001 RAL-799 864 chr3L 15288056 15288066 chr3L 15289303 15289313 5 1249 20.5 20.5 20.5 0.2 1257 chr3L 15288056 intergenic not near genes chr3L 15288684 intergenic not near genes chr3L 15289313 intergenic not near genes chr3L_5_15285001 chr3L_15285001 RAL-799 865 chr3L 15295767 15295795 chr3L 15298610 15298638 gypsy5 8 2842 2.5 5.0 3.8 1.7 2871 chr3L 15295767 intergenic not near genes chr3L 15297202 intergenic not near genes chr3L 15298638 intergenic Best4 + chr3L_8_15295001 chr3L_15295001 RAL-799 866 chr3L 15384956 15384983 chr3L 15385084 15385111 8 128 1.0 2.0 1.5 3.2 155 chr3L 15384956 intergenic not near genes chr3L 15385034 intergenic not near genes chr3L 15385111 intergenic not near genes chr3L_8_15385001 chr3L_15385001 RAL-799 867 chr3L 15393668 15393694 chr3L 15393869 15393896 9 202 1.0 4.0 2.5 2.6 228 chr3L 15393668 intergenic not near genes chr3L 15393782 intergenic not near genes chr3L 15393896 intergenic not near genes chr3L_9_15390001 chr3L_15390001 RAL-799 868 chr3L 15406041 15406051 chr3L 15406121 15406134 4 82 0.0 4.5 2.2 1.2 93 chr3L 15406041 intergenic not near genes chr3L 15406088 intergenic not near genes chr3L 15406134 intergenic not near genes chr3L_4_15405001 chr3L_15405001 RAL-799 869 chr3L 15444666 15444680 chr3L 15444753 15444774 5 92 2.0 7.5 4.8 0.9 108 chr3L 15444666 intergenic not near genes chr3L 15444720 intergenic not near genes chr3L 15444774 intergenic not near genes chr3L_5_15440001 chr3L_15440001 RAL-799 870 chr3L 15463456 15463493 chr3L 15463546 15463583 11 90 2.5 3.0 2.8 2.9 127 chr3L 15463456 intergenic not near genes chr3L 15463520 intergenic not near genes chr3L 15463583 intergenic not near genes chr3L_11_15460001 chr3L_15460001 RAL-799 871 chr3L 15486036 15486068 chr3L 15486127 15486159 4 91 1.0 0.0 0.5 2.7 123 chr3L 15486036 intergenic not near genes chr3L 15486098 intergenic not near genes chr3L 15486159 intergenic not near genes chr3L_4_15485001 chr3L_15485001 RAL-799 872 chr3L 15679171 15679202 chr3L 15679503 15679534 4 332 3.0 0.5 1.8 1.4 363 chr3L 15679171 intergenic not near genes chr3L 15679352 intergenic CG7304 + chr3L 15679534 intergenic CG7304 + chr3L_4_15675001 chr3L_15675001 RAL-799 873 chr3L 15746064 15746085 chr3L 15746140 15746160 5 76 1.5 1.5 1.5 2.0 96 chr3L 15746064 intergenic not near genes chr3L 15746112 intergenic not near genes chr3L 15746160 intergenic not near genes chr3L_5_15745001 chr3L_15745001 RAL-799 874 chr3L 15756884 15756911 chr3L 15756966 15756989 7 80 1.0 0.5 0.8 3.9 105 chr3L 15756884 intergenic not near genes chr3L 15756936 intergenic not near genes chr3L 15756989 intergenic not near genes chr3L_7_15755001 chr3L_15755001 RAL-799 875 chr3L 15883190 15883225 chr3L 15883483 15883518 6 290 1.5 1.0 1.2 2.7 328 chr3L 15883190 intron pHCl - chr3L 15883354 intron pHCl - chr3L 15883518 intron pHCl - chr3L_6_15880001 chr3L_15880001 RAL-799 876 chr3L 15899232 15899262 chr3L 15899791 15899812 jockey 7 561 1.5 4.5 3.0 1.8 580 chr3L 15899232 intergenic pHCl - chr3L 15899522 intergenic pHCl - chr3L 15899812 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-799 877 chr3L 16060485 16060500 chr3L 16060624 16060639 6 138 4.0 1.0 2.5 1.7 154 chr3L 16060485 intron Mbs + chr3L 16060562 intron Mbs + chr3L 16060639 intron Mbs + chr3L_6_16060001 chr3L_16060001 RAL-799 878 chr3L 16158808 16158822 chr3L 16158893 16158907 4 85 0.0 2.5 1.2 1.8 99 chr3L 16158808 intron CG5151 - chr3L 16158858 intron CG5151 - chr3L 16158907 intron CG5151 - chr3L_4_16155001 chr3L_16155001 RAL-799 879 chr3L 16184087 16184122 chr3L 16188931 16188966 X-element 11 4844 1.0 1.5 1.2 5.0 4879 chr3L 16184087 intergenic not near genes chr3L 16186526 intergenic not near genes chr3L 16188966 intergenic not near genes chr3L_11_16185001 chr3L_16185001 RAL-799 880 chr3L 16212809 16212844 chr3L 16212900 16212935 8 91 1.5 1.5 1.5 3.2 126 chr3L 16212809 intergenic CG13073 - chr3L 16212872 intergenic CG13073 - chr3L 16212935 intergenic CG13073 - chr3L_8_16210001 chr3L_16210001 RAL-799 881 chr3L 16258385 16258417 chr3L 16258471 16258503 12 86 3.0 1.0 2.0 4.0 118 chr3L 16258385 intergenic not near genes chr3L 16258444 intergenic not near genes chr3L 16258503 intergenic not near genes chr3L_12_16255001 chr3L_16255001 RAL-799 882 chr3L 16437068 16437093 chr3L 16437147 16437179 5 82 3.0 0.0 1.5 2.0 111 chr3L 16437068 intron,intron CG33158 +,dsx-c73A - chr3L 16437124 intron,intron CG33158 +,dsx-c73A - chr3L 16437179 intron,intron CG33158 +,dsx-c73A - chr3L_5_16435001 chr3L_16435001 RAL-799 883 chr3L 16458270 16458285 chr3L 16458383 16458398 4 113 1.5 1.5 1.5 1.6 128 chr3L 16458270 intron CG33158 + chr3L 16458334 intron CG33158 + chr3L 16458398 intron CG33158 + chr3L_4_16455001 chr3L_16455001 RAL-799 884 chr3L 16493974 16494010 chr3L 16494491 16494526 jockey 15 516 4.5 2.0 3.2 3.6 552 chr3L 16493974 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494250 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494526 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_15_16490001 chr3L_16490001 RAL-799 885 chr3L 16532906 16532927 chr3L 16532983 16533004 5 77 2.0 2.5 2.2 1.6 98 chr3L 16532906 intron CG43373 - chr3L 16532955 intron CG43373 - chr3L 16533004 intron CG43373 - chr3L_5_16530001 chr3L_16530001 RAL-799 886 chr3L 16542935 16542966 chr3L 16543034 16543065 5 99 0.5 2.5 1.5 2.0 130 chr3L 16542935 intron CG43373 - chr3L 16543000 intron CG43373 - chr3L 16543065 intron CG43373 - chr3L_5_16540001 chr3L_16540001 RAL-799 887 chr3L 16610686 16610714 chr3L 16610771 16610799 4 85 0.0 3.0 1.5 1.6 113 chr3L 16610686 3` UTR Su(P) - chr3L 16610742 exon Su(P) - chr3L 16610799 exon Su(P) - chr3L_4_16610001 chr3L_16610001 RAL-799 888 chr3L 16616518 16616528 chr3L 16621846 16621856 297 4 5328 1.5 2.5 2.0 1.3 5338 chr3L 16616518 3` UTR Abl - chr3L 16619187 3` UTR Abl - chr3L 16621856 3` UTR Abl - chr3L_4_16615001 chr3L_16615001 RAL-799 889 chr3L 16652687 16652714 chr3L 16652766 16652793 11 79 1.5 2.5 2.0 3.7 106 chr3L 16652687 intron Baldspot - chr3L 16652740 intron Baldspot - chr3L 16652793 intron Baldspot - chr3L_11_16650001 chr3L_16650001 RAL-799 890 chr3L 16680296 16680315 chr3L 16680765 16680781 8 468 6.5 3.5 5.0 1.3 485 chr3L 16680296 intron,intron Lasp -,CG43954 - chr3L 16680538 intron,intron Lasp -,CG43954 - chr3L 16680781 intron,intron Lasp -,CG43954 - chr3L_8_16680001 chr3L_16680001 RAL-799 891 chr3L 16698394 16698413 chr3L 16698483 16698510 6 95 2.0 2.5 2.2 1.9 116 chr3L 16698394 intron,intron Lasp -,CG43954 - chr3L 16698452 intron,intron Lasp -,CG43954 - chr3L 16698510 intron,intron Lasp -,CG43954 - chr3L_6_16695001 chr3L_16695001 RAL-799 892 chr3L 16743952 16743968 chr3L 16744066 16744079 4 113 7.0 1.0 4.0 0.8 127 chr3L 16743952 intergenic not near genes chr3L 16744016 intergenic not near genes chr3L 16744079 intergenic not near genes chr3L_4_16740001 chr3L_16740001 RAL-799 893 chr3L 16749212 16749239 chr3L 16749287 16749315 9 75 0.5 1.0 0.8 5.0 103 chr3L 16749212 intergenic not near genes chr3L 16749264 intergenic not near genes chr3L 16749315 intergenic not near genes chr3L_9_16745001 chr3L_16745001 RAL-799 894 chr3L 16866213 16866233 chr3L 16866304 16866320 5 90 2.0 1.0 1.5 2.0 107 chr3L 16866213 intron Lmpt + chr3L 16866266 intron Lmpt + chr3L 16866320 intron Lmpt + chr3L_5_16865001 chr3L_16865001 RAL-799 895 chr3L 16926216 16926246 chr3L 16927561 16927591 4 1333 3.5 4.0 3.8 0.8 1375 chr3L 16926216 intron CG13023 - chr3L 16926904 intron CG13023 - chr3L 16927591 intergenic CG13023 - chr3L_4_16925001 chr3L_16925001 RAL-799 896 chr3L 16945726 16945758 chr3L 16954879 16954909 roo 21 9150 8.0 0.0 4.0 4.2 9183 chr3L 16945726 exon Obp73a + chr3L 16950318 intergenic not near genes chr3L 16954909 5` UTR Nc73EF + chr3L_21_16950001 chr3L_16950001 RAL-799 897 chr3L 17026791 17026819 chr3L 17026869 17026900 5 80 4.0 0.5 2.2 1.6 109 chr3L 17026791 exon Fit2 + chr3L 17026846 3` UTR Fit2 + chr3L 17026900 3` UTR Fit2 + chr3L_5_17025001 chr3L_17025001 RAL-799 898 chr3L 17034936 17034953 chr3L 17035124 17035141 G2 4 188 2.5 2.0 2.2 1.2 205 chr3L 17034936 intergenic not near genes chr3L 17035038 intergenic not near genes chr3L 17035141 intergenic not near genes chr3L_4_17035001 chr3L_17035001 RAL-799 899 chr3L 17085015 17085035 chr3L 17094164 17094183 roo 9 9149 1.5 3.5 2.5 2.6 9168 chr3L 17085015 intron Rbp6 - chr3L 17089599 intron Rbp6 - chr3L 17094183 intron Rbp6 - chr3L_9_17085001 chr3L_17085001 RAL-799 900 chr3L 17113556 17113573 chr3L 17114106 17114120 5 549 1.0 2.5 1.8 1.8 564 chr3L 17113556 intron Rbp6 - chr3L 17113838 intron Rbp6 - chr3L 17114120 intron Rbp6 - chr3L_5_17110001 chr3L_17110001 RAL-799 901 chr3L 17120658 17120673 chr3L 17120734 17120749 5 76 3.5 2.0 2.8 1.3 91 chr3L 17120658 intron Rbp6 - chr3L 17120704 intron Rbp6 - chr3L 17120749 intron Rbp6 - chr3L_5_17120001 chr3L_17120001 RAL-799 902 chr3L 17149165 17149181 chr3L 17149246 17149262 6 81 6.5 0.0 3.2 1.4 97 chr3L 17149165 intron Rbp6 - chr3L 17149214 intron Rbp6 - chr3L 17149262 intron Rbp6 - chr3L_6_17145001 chr3L_17145001 RAL-799 903 chr3L 17272252 17272263 chr3L 17272385 17272395 4 133 3.0 2.0 2.5 1.1 143 chr3L 17272252 intergenic not near genes chr3L 17272324 intergenic not near genes chr3L 17272395 intergenic not near genes chr3L_4_17270001 chr3L_17270001 RAL-799 904 chr3L 17329264 17329286 chr3L 17329344 17329366 6 80 0.5 3.5 2.0 2.0 102 chr3L 17329264 intergenic Or74a - chr3L 17329315 intergenic Or74a - chr3L 17329366 intergenic Or74a - chr3L_6_17325001 chr3L_17325001 RAL-799 905 chr3L 17331063 17331081 chr3L 17331152 17331171 4 90 2.5 1.5 2.0 1.3 108 chr3L 17331063 intergenic not near genes chr3L 17331117 intergenic not near genes chr3L 17331171 intergenic not near genes chr3L_4_17330001 chr3L_17330001 RAL-799 906 chr3L 17510732 17510762 chr3L 17510816 17510846 23 84 2.5 2.0 2.2 7.2 114 chr3L 17510732 exon Oatp74D + chr3L 17510789 intron Oatp74D + chr3L 17510846 intron Oatp74D + chr3L_23_17510001 chr3L_17510001 RAL-799 907 chr3L 17645310 17645334 chr3L 17645387 17645411 5 77 2.5 0.0 1.2 2.3 101 chr3L 17645310 intergenic CG43085 -,Pep - chr3L 17645360 intergenic CG43085 -,Pep - chr3L 17645411 intergenic CG43085 -,Pep - chr3L_5_17645001 chr3L_17645001 RAL-799 908 chr3L 17672556 17672593 chr3L 17672632 17672669 4 76 2.0 3.0 2.5 1.1 113 chr3L 17672556 intron CG34251 + chr3L 17672612 intron CG34251 + chr3L 17672669 intron CG34251 + chr3L_4_17670001 chr3L_17670001 RAL-799 909 chr3L 17730849 17730884 chr3L 17738178 17738214 mdg1 4 7330 0.0 0.0 0.0 4.0 7365 chr3L 17730849 intron Ccn + chr3L 17734532 intron Ccn + chr3L 17738214 intron Ccn + chr3L_4_17730001 chr3L_17730001 RAL-799 910 chr3L 17799813 17799842 chr3L 17801600 17801629 S-element 4 1787 3.0 0.5 1.8 1.4 1816 chr3L 17799813 intron NUCB1 - chr3L 17800721 intron NUCB1 - chr3L 17801629 intron NUCB1 - chr3L_4_17800001 chr3L_17800001 RAL-799 911 chr3L 18047711 18047732 chr3L 18056767 18056789 roo 5 9056 3.0 2.5 2.8 1.3 9078 chr3L 18047711 intron Eip75B - chr3L 18052250 intron Eip75B - chr3L 18056789 intron Eip75B - chr3L_5_18050001 chr3L_18050001 RAL-799 912 chr3L 18073979 18074010 chr3L 18074080 18074111 9 101 2.5 0.5 1.5 3.6 132 chr3L 18073979 intergenic CG44004 - chr3L 18074045 intergenic CG44004 - chr3L 18074111 intergenic CG44004 - chr3L_9_18070001 chr3L_18070001 RAL-799 913 chr3L 18107614 18107648 chr3L 18107707 18107741 5 93 1.0 1.5 1.2 2.3 127 chr3L 18107614 intergenic mRpS26 +,CG5147 - chr3L 18107678 intergenic CG5147 -,mRpS26 + chr3L 18107741 intergenic CG5147 -,mRpS26 + chr3L_5_18105001 chr3L_18105001 RAL-799 914 chr3L 18122642 18122654 chr3L 18122719 18122731 4 77 0.5 2.5 1.5 1.6 89 chr3L 18122642 intergenic not near genes chr3L 18122686 intergenic not near genes chr3L 18122731 intergenic not near genes chr3L_4_18120001 chr3L_18120001 RAL-799 915 chr3L 18172691 18172702 chr3L 18172767 18172777 4 76 2.0 1.5 1.8 1.4 86 chr3L 18172691 intron W - chr3L 18172734 intron W - chr3L 18172777 intron W - chr3L_4_18170001 chr3L_18170001 RAL-799 916 chr3L 18175816 18175838 chr3L 18176054 18176076 6 238 0.5 1.0 0.8 3.3 260 chr3L 18175816 intron W - chr3L 18175946 intron W - chr3L 18176076 intron W - chr3L_6_18175001 chr3L_18175001 RAL-799 917 chr3L 18221097 18221108 chr3L 18221178 18221189 4 81 0.5 0.0 0.2 3.3 92 chr3L 18221097 intergenic not near genes chr3L 18221143 intergenic not near genes chr3L 18221189 intergenic not near genes chr3L_4_18220001 chr3L_18220001 RAL-799 918 chr3L 18248958 18248971 chr3L 18249056 18249069 6 98 0.5 1.0 0.8 3.3 111 chr3L 18248958 intergenic not near genes chr3L 18249014 intergenic not near genes chr3L 18249069 intergenic not near genes chr3L_6_18245001 chr3L_18245001 RAL-799 919 chr3L 18262471 18262487 chr3L 18262554 18262570 4 83 1.0 1.5 1.2 1.8 99 chr3L 18262471 intergenic not near genes chr3L 18262520 intergenic not near genes chr3L 18262570 intergenic not near genes chr3L_4_18260001 chr3L_18260001 RAL-799 920 chr3L 18276097 18276106 chr3L 18276191 18276201 4 94 0.0 1.0 0.5 2.7 104 chr3L 18276097 intergenic not near genes chr3L 18276149 intergenic not near genes chr3L 18276201 intergenic not near genes chr3L_4_18275001 chr3L_18275001 RAL-799 921 chr3L 18359599 18359624 chr3L 18359691 18359716 7 92 4.0 2.5 3.2 1.7 117 chr3L 18359599 intergenic not near genes chr3L 18359658 intergenic not near genes chr3L 18359716 intergenic not near genes chr3L_7_18355001 chr3L_18355001 RAL-799 922 chr3L 18436072 18436096 chr3L 18436170 18436194 6 98 1.5 1.5 1.5 2.4 122 chr3L 18436072 intergenic not near genes chr3L 18436133 intergenic not near genes chr3L 18436194 intergenic not near genes chr3L_6_18435001 chr3L_18435001 RAL-799 923 chr3L 18456279 18456295 chr3L 18456367 18456383 4 88 2.0 2.5 2.2 1.2 104 chr3L 18456279 intergenic CR44670 - chr3L 18456331 intergenic CR44670 - chr3L 18456383 intergenic CR44670 - chr3L_4_18455001 chr3L_18455001 RAL-799 924 chr3L 18506130 18506158 chr3L 18509593 18509621 F-element 9 3463 2.0 1.5 1.8 3.2 3491 chr3L 18506130 intergenic not near genes chr3L 18507876 intergenic not near genes chr3L 18509621 intergenic not near genes chr3L_9_18505001 chr3L_18505001 RAL-799 925 chr3L 18528629 18528654 chr3L 18537790 18537815 roo 5 9161 2.5 1.0 1.8 1.8 9186 chr3L 18528629 intergenic not near genes chr3L 18533222 intergenic not near genes chr3L 18537815 intergenic not near genes chr3L_5_18530001 chr3L_18530001 RAL-799 926 chr3L 18579565 18579600 chr3L 18579693 18579728 4 128 2.0 2.5 2.2 1.2 163 chr3L 18579565 intergenic not near genes chr3L 18579646 intergenic not near genes chr3L 18579728 intergenic not near genes chr3L_4_18575001 chr3L_18575001 RAL-799 927 chr3L 18638578 18638605 chr3L 18638672 18638699 4 94 1.0 2.5 1.8 1.4 121 chr3L 18638578 intron MYPT-75D + chr3L 18638638 intron MYPT-75D + chr3L 18638699 intron MYPT-75D + chr3L_4_18635001 chr3L_18635001 RAL-799 928 chr3L 18701130 18701163 chr3L 18701218 18701251 10 88 2.5 2.5 2.5 2.9 121 chr3L 18701130 intergenic not near genes chr3L 18701190 intergenic not near genes chr3L 18701251 intergenic not near genes chr3L_10_18700001 chr3L_18700001 RAL-799 929 chr3L 18710760 18710791 chr3L 18718712 18718743 Stalker2 10 7952 2.5 2.5 2.5 2.9 7983 chr3L 18710760 intergenic not near genes chr3L 18714752 intergenic not near genes chr3L 18718743 intergenic not near genes chr3L_10_18710001 chr3L_18710001 RAL-799 930 chr3L 18721774 18721800 chr3L 18721864 18721891 5 89 1.0 1.5 1.2 2.3 117 chr3L 18721774 intergenic CG12477 - chr3L 18721832 intergenic CG12477 - chr3L 18721891 intergenic CG12477 - chr3L_5_18720001 chr3L_18720001 RAL-799 931 chr3L 18765478 18765500 chr3L 18765591 18765613 4 112 1.0 5.0 3.0 1.0 135 chr3L 18765478 intron ftz-f1 - chr3L 18765546 intron ftz-f1 - chr3L 18765613 intron ftz-f1 - chr3L_4_18765001 chr3L_18765001 RAL-799 932 chr3L 18772410 18772441 chr3L 18781091 18781122 roo 7 8681 2.5 0.5 1.5 2.8 8712 chr3L 18772410 intron ftz-f1 - chr3L 18776766 intron ftz-f1 - chr3L 18781122 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-799 933 chr3L 18843874 18843885 chr3L 18843972 18843983 4 98 2.5 0.5 1.5 1.6 109 chr3L 18843874 intron Indy - chr3L 18843928 intron Indy - chr3L 18843983 intron Indy - chr3L_4_18840001 chr3L_18840001 RAL-799 934 chr3L 18929965 18929983 chr3L 18930048 18930067 5 84 0.5 4.0 2.2 1.6 102 chr3L 18929965 intron CG32204 - chr3L 18930016 intron CG32204 - chr3L 18930067 exon CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-799 935 chr3L 18969559 18969577 chr3L 18969635 18969650 4 75 1.0 2.5 1.8 1.4 91 chr3L 18969559 intergenic not near genes chr3L 18969604 intergenic not near genes chr3L 18969650 intergenic not near genes chr3L_4_18965001 chr3L_18965001 RAL-799 936 chr3L 19008837 19008843 chr3L 19009174 19009180 jockey 4 336 6.0 0.5 3.2 1.0 343 chr3L 19008837 intron nkd - chr3L 19009008 intron nkd - chr3L 19009180 intron nkd - chr3L_4_19005001 chr3L_19005001 RAL-799 937 chr3L 19029453 19029473 chr3L 19029555 19029575 4 102 2.0 4.0 3.0 1.0 122 chr3L 19029453 intron nkd - chr3L 19029514 intron nkd - chr3L 19029575 intron nkd - chr3L_4_19025001 chr3L_19025001 RAL-799 938 chr3L 19082035 19082065 chr3L 19082137 19082167 6 102 2.0 1.5 1.8 2.1 132 chr3L 19082035 intron Mkp3 - chr3L 19082101 intron Mkp3 - chr3L 19082167 intron Mkp3 - chr3L_6_19080001 chr3L_19080001 RAL-799 939 chr3L 19115642 19115668 chr3L 19115821 19115846 BS 5 178 5.5 1.5 3.5 1.1 204 chr3L 19115642 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115846 intron CG14082 - chr3L_5_19115001 chr3L_19115001 RAL-799 940 chr3L 19117040 19117073 chr3L 19124487 19124520 mdg1 10 7446 2.0 3.5 2.8 2.6 7480 chr3L 19117040 intron CG14082 - chr3L 19120780 intron CG14082 - chr3L 19124520 intron CG14082 - chr3L_10_19120001 chr3L_19120001 RAL-799 941 chr3L 19138557 19138588 chr3L 19138638 19138669 12 79 2.0 4.5 3.2 2.9 112 chr3L 19138557 intron CG14082 - chr3L 19138613 intron CG14082 - chr3L 19138669 intron CG14082 - chr3L_12_19135001 chr3L_19135001 RAL-799 942 chr3L 19173716 19173742 chr3L 19173867 19173893 10 149 1.5 2.0 1.8 3.6 177 chr3L 19173716 intron fz2 - chr3L 19173804 intron fz2 - chr3L 19173893 intron fz2 - chr3L_10_19170001 chr3L_19170001 RAL-799 943 chr3L 19182396 19182417 chr3L 19182477 19182498 4 80 1.5 1.5 1.5 1.6 102 chr3L 19182396 intron fz2 - chr3L 19182447 intron fz2 - chr3L 19182498 intron fz2 - chr3L_4_19180001 chr3L_19180001 RAL-799 944 chr3L 19208056 19208089 chr3L 19209430 19209454 Doc 7 1373 2.0 1.5 1.8 2.5 1398 chr3L 19208056 intron fz2 - chr3L 19208755 intron fz2 - chr3L 19209454 intron fz2 - chr3L_7_19205001 chr3L_19205001 RAL-799 945 chr3L 9307796 9307796 chr3L 19220633 19220634 4 9912838 11.0 17.0 14.0 0.3 9912838 chr3L 9307796 intergenic not near genes chr3L 14264215 intergenic not near genes chr3L 19220634 intron fz2 - chr3L_4_14260001 chr3L_14260001 RAL-799 946 chr3L 9307795 9307796 chr3L 19220637 19220637 4 9912841 11.0 17.5 14.2 0.3 9912842 chr3L 9307795 intergenic not near genes chr3L 14264216 intergenic not near genes chr3L 19220637 intron fz2 - chr3L_4_14260001 chr3L_14260001 RAL-799 947 chr3L 19238723 19238741 chr3L 19238830 19238847 5 107 3.5 1.0 2.2 1.6 124 chr3L 19238723 intergenic not near genes chr3L 19238785 intergenic not near genes chr3L 19238847 intergenic not near genes chr3L_5_19235001 chr3L_19235001 RAL-799 948 chr3L 19244112 19244138 chr3L 19244190 19244216 10 76 3.0 3.0 3.0 2.5 104 chr3L 19244112 intergenic not near genes chr3L 19244164 intergenic not near genes chr3L 19244216 intergenic not near genes chr3L_10_19240001 chr3L_19240001 RAL-799 949 chr3L 19269815 19269844 chr3L 19270019 19270048 8 204 2.5 2.5 2.5 2.3 233 chr3L 19269815 intron,exon CG14085 +,CG14088 - chr3L 19269932 intron,exon CG14085 +,CG14088 - chr3L 19270048 intron,exon CG14085 +,CG14088 - chr3L_8_19265001 chr3L_19265001 RAL-799 950 chr3L 19426766 19426781 chr3L 19426844 19426859 6 78 2.0 5.0 3.5 1.3 93 chr3L 19426766 intergenic not near genes chr3L 19426812 intergenic not near genes chr3L 19426859 intergenic not near genes chr3L_6_19425001 chr3L_19425001 RAL-799 951 chr3L 19439174 19439197 chr3L 19439253 19439276 6 79 1.5 3.0 2.2 1.9 102 chr3L 19439174 intergenic not near genes chr3L 19439225 intergenic not near genes chr3L 19439276 intergenic not near genes chr3L_6_19435001 chr3L_19435001 RAL-799 952 chr3L 19488477 19488486 chr3L 19488559 19488568 4 82 3.0 2.0 2.5 1.1 91 chr3L 19488477 intergenic pncr009:3L -,CG32212 + chr3L 19488522 intergenic pncr009:3L -,CG32212 + chr3L 19488568 intergenic pncr009:3L -,CG32212 + chr3L_4_19485001 chr3L_19485001 RAL-799 953 chr3L 19641365 19641387 chr3L 19641461 19641484 9 97 3.5 1.0 2.2 2.8 119 chr3L 19641365 intron CG8786 - chr3L 19641424 intron CG8786 - chr3L 19641484 intron CG8786 - chr3L_9_19640001 chr3L_19640001 RAL-799 954 chr3L 19695433 19695459 chr3L 19695512 19695543 4 80 2.5 0.0 1.2 1.8 110 chr3L 19695433 intergenic verm - chr3L 19695488 intergenic verm - chr3L 19695543 intergenic verm - chr3L_4_19695001 chr3L_19695001 RAL-799 955 chr3L 19820299 19820317 chr3L 19827848 19827866 412 6 7549 2.0 1.0 1.5 2.4 7567 chr3L 19820299 intron Deaf1 + chr3L 19824082 intron Deaf1 + chr3L 19827866 intron Deaf1 + chr3L_6_19820001 chr3L_19820001 RAL-799 956 chr3L 19861827 19861845 chr3L 19863615 19863631 S-element 6 1786 2.5 2.0 2.2 1.9 1804 chr3L 19861827 5` UTR CR45433 + chr3L 19862729 intergenic not near genes chr3L 19863631 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-799 957 chr3L 19933538 19933550 chr3L 19934360 19934372 6 822 3.0 0.5 1.8 2.1 834 chr3L 19933538 intergenic CR45678 + chr3L 19933955 5` UTR CR45678 + chr3L 19934372 intergenic CR45678 + chr3L_6_19930001 chr3L_19930001 RAL-799 958 chr3L 19961282 19961306 chr3L 19961493 19961517 10 210 3.5 5.0 4.2 1.9 235 chr3L 19961282 intron Ac76E + chr3L 19961400 intron Ac76E + chr3L 19961517 intron Ac76E + chr3L_10_19960001 chr3L_19960001 RAL-799 959 chr3L 19962957 19962976 chr3L 19963034 19963054 5 78 1.5 4.0 2.8 1.3 97 chr3L 19962957 intron Ac76E + chr3L 19963006 intron Ac76E + chr3L 19963054 intron Ac76E + chr3L_5_19960001 chr3L_19960001 RAL-799 960 chr3L 19992100 19992110 chr3L 19992174 19992187 6 76 9.0 2.5 5.8 0.9 87 chr3L 19992100 intron,intron CG7646 +,Nca + chr3L 19992144 intron,intron CG7646 +,Nca + chr3L 19992187 intron,intron CG7646 +,Nca + chr3L_6_19990001 chr3L_19990001 RAL-799 961 chr3L 20113660 20113686 chr3L 20122916 20122937 roo 4 9255 0.5 0.5 0.5 2.7 9277 chr3L 20113660 intergenic not near genes chr3L 20118298 intergenic not near genes chr3L 20122937 intergenic not near genes chr3L_4_20115001 chr3L_20115001 RAL-799 962 chr3L 20148286 20148315 chr3L 20148376 20148405 9 89 0.0 2.0 1.0 4.5 119 chr3L 20148286 intergenic not near genes chr3L 20148346 intergenic not near genes chr3L 20148405 intergenic not near genes chr3L_9_20145001 chr3L_20145001 RAL-799 963 chr3L 20156167 20156190 chr3L 20156289 20156311 8 122 1.5 3.0 2.2 2.5 144 chr3L 20156167 intron CG42674 - chr3L 20156239 intron CG42674 - chr3L 20156311 intron CG42674 - chr3L_8_20155001 chr3L_20155001 RAL-799 964 chr3L 20257338 20257357 chr3L 20258458 20258477 pogo 9 1118 3.0 9.0 6.0 1.3 1139 chr3L 20257338 intron rdgC + chr3L 20257908 intron rdgC + chr3L 20258477 intron rdgC + chr3L_9_20255001 chr3L_20255001 RAL-799 965 chr3L 20283679 20283704 chr3L 20283763 20283787 6 84 0.5 2.0 1.2 2.7 108 chr3L 20283679 intron gogo - chr3L 20283733 intron gogo - chr3L 20283787 intron gogo - chr3L_6_20280001 chr3L_20280001 RAL-799 966 chr3L 20345604 20345637 chr3L 20345685 20345717 5 81 4.0 1.0 2.5 1.4 113 chr3L 20345604 intergenic Rbbp5 - chr3L 20345660 intergenic Rbbp5 - chr3L 20345717 intergenic Rbbp5 - chr3L_5_20345001 chr3L_20345001 RAL-799 967 chr3L 20386940 20386972 chr3L 20387042 20387071 7 102 2.0 3.0 2.5 2.0 131 chr3L 20386940 intron fbl + chr3L 20387006 intron fbl + chr3L 20387071 intron fbl + chr3L_7_20385001 chr3L_20385001 RAL-799 968 chr3L 20580053 20580059 chr3L 20580139 20580145 4 86 0.0 4.5 2.2 1.2 92 chr3L 20580053 intergenic not near genes chr3L 20580099 intergenic not near genes chr3L 20580145 intergenic not near genes chr3L_4_20580001 chr3L_20580001 RAL-799 969 chr3L 20590064 20590094 chr3L 20590603 20590629 412 6 537 2.0 2.5 2.2 1.9 565 chr3L 20590064 intergenic not near genes chr3L 20590346 intergenic not near genes chr3L 20590629 intergenic not near genes chr3L_6_20590001 chr3L_20590001 RAL-799 970 chr3L 20710756 20710792 chr3L 20710833 20710869 6 77 2.0 2.0 2.0 2.0 113 chr3L 20710756 intergenic not near genes chr3L 20710812 intergenic not near genes chr3L 20710869 intergenic not near genes chr3L_6_20710001 chr3L_20710001 RAL-799 971 chr3L 13436148 13436170 chr3L 20815846 20815866 4 7379700 5.0 14.5 9.8 0.4 7379718 chr3L 13436148 intron CG10154 - chr3L 17126007 intron Rbp6 - chr3L 20815866 intron CG3618 - chr3L_4_17125001 chr3L_17125001 RAL-799 972 chr3L 20913749 20913779 chr3L 20913831 20913861 10 81 2.0 2.5 2.2 3.1 112 chr3L 20913749 intergenic CR43930 - chr3L 20913805 intergenic CR43930 - chr3L 20913861 intergenic CR43930 - chr3L_10_20910001 chr3L_20910001 RAL-799 973 chr3L 21151863 21151896 chr3L 21156947 21156980 flea 9 5084 2.0 1.0 1.5 3.6 5117 chr3L 21151863 intron Ac78C - chr3L 21154422 intron Ac78C - chr3L 21156980 intron Ac78C - chr3L_9_21150001 chr3L_21150001 RAL-799 974 chr3L 21163250 21163275 chr3L 21163333 21163353 4 79 0.0 3.5 1.8 1.4 103 chr3L 21163250 intron Ac78C - chr3L 21163302 intron Ac78C - chr3L 21163353 intron Ac78C - chr3L_4_21160001 chr3L_21160001 RAL-799 975 chr3L 21243746 21243767 chr3L 21251309 21251330 412 4 7563 3.0 5.5 4.2 0.8 7584 chr3L 21243746 intron Eip78C + chr3L 21247538 intron Eip78C + chr3L 21251330 intron Eip78C + chr3L_4_21245001 chr3L_21245001 RAL-799 976 chr3L 21301733 21301765 chr3L 21301819 21301851 10 86 3.5 1.5 2.5 2.9 118 chr3L 21301733 5` UTR CR45432 + chr3L 21301792 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301851 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_10_21300001 chr3L_21300001 RAL-799 977 chr3L 21306155 21306178 chr3L 21315314 21315337 roo 6 9159 0.5 2.0 1.2 2.7 9182 chr3L 21306155 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310746 intron Pc - chr3L 21315337 3` UTR Pc - chr3L_6_21310001 chr3L_21310001 RAL-799 978 chr3L 21319531 21319557 chr3L 21319618 21319646 5 87 3.5 3.5 3.5 1.1 115 chr3L 21319531 5` UTR Rab26 + chr3L 21319588 5` UTR Rab26 + chr3L 21319646 5` UTR Rab26 + chr3L_5_21315001 chr3L_21315001 RAL-799 979 chr3L 21361729 21361751 chr3L 21362683 21362705 G2 7 953 3.0 4.5 3.8 1.5 976 chr3L 21361729 intergenic CG32440 + chr3L 21362217 intergenic not near genes chr3L 21362705 intergenic not near genes chr3L_7_21360001 chr3L_21360001 RAL-799 980 chr3L 21362861 21362881 chr3L 21362945 21362960 8 83 2.0 4.0 3.0 2.0 99 chr3L 21362861 intergenic not near genes chr3L 21362910 intergenic not near genes chr3L 21362960 intergenic not near genes chr3L_8_21360001 chr3L_21360001 RAL-799 981 chr3L 21395142 21395177 chr3L 21395230 21395265 10 87 4.0 5.5 4.8 1.7 123 chr3L 21395142 intron rgn + chr3L 21395204 intron rgn + chr3L 21395265 intron rgn + chr3L_10_21395001 chr3L_21395001 RAL-799 982 chr3L 21406994 21407025 chr3L 21407073 21407104 5 79 2.0 3.0 2.5 1.4 110 chr3L 21406994 intron rgn + chr3L 21407049 intron rgn + chr3L 21407104 intron rgn + chr3L_5_21405001 chr3L_21405001 RAL-799 983 chr3L 21415899 21415925 chr3L 21415996 21416021 7 96 1.5 5.0 3.2 1.7 122 chr3L 21415899 intron rgn + chr3L 21415960 intron rgn + chr3L 21416021 intron rgn + chr3L_7_21415001 chr3L_21415001 RAL-799 984 chr3L 4341331 4341335 chr3L 21448026 21448026 6 17106693 11.0 9.0 10.0 0.5 17106695 chr3L 4341331 intron Cip4 - chr3L 12894678 3` UTR CG14118 + chr3L 21448026 3` UTR Syx7 + chr3L_6_12890001 chr3L_12890001 RAL-799 985 chr3L 21498836 21498869 chr3L 21500472 21500502 1360 8 1635 1.0 5.0 3.0 2.0 1666 chr3L 21498836 intron Glg1 - chr3L 21499669 intron Glg1 - chr3L 21500502 intron Glg1 - chr3L_8_21495001 chr3L_21495001 RAL-799 986 chr3L 21649776 21649797 chr3L 21650000 21650021 4 224 0.5 0.5 0.5 2.7 245 chr3L 21649776 intron CG43980 + chr3L 21649898 intron CG43980 + chr3L 21650021 intron CG43980 + chr3L_4_21645001 chr3L_21645001 RAL-799 987 chr3L 21653528 21653529 chr3L 21653600 21653608 5 77 5.0 3.0 4.0 1.0 80 chr3L 21653528 intron CG43980 + chr3L 21653568 intron CG43980 + chr3L 21653608 intron CG43980 + chr3L_5_21650001 chr3L_21650001 RAL-799 988 chr3L 21749313 21749350 chr3L 21754472 21754482 Doc 4 5153 2.5 3.0 2.8 1.1 5169 chr3L 21749313 intron Syn1 - chr3L 21751898 intron Syn1 - chr3L 21754482 intron Syn1 - chr3L_4_21750001 chr3L_21750001 RAL-799 989 chr3L 21798765 21798793 chr3L 21798854 21798882 6 89 1.5 0.0 0.8 3.3 117 chr3L 21798765 intergenic not near genes chr3L 21798824 intergenic not near genes chr3L 21798882 intergenic not near genes chr3L_6_21795001 chr3L_21795001 RAL-799 990 chr3L 21836730 21836762 chr3L 21836816 21836848 4 86 0.0 2.0 1.0 2.0 118 chr3L 21836730 3` UTR P5CDh1 - chr3L 21836789 3` UTR P5CDh1 - chr3L 21836848 3` UTR P5CDh1 - chr3L_4_21835001 chr3L_21835001 RAL-799 991 chr3L 21868350 21868378 chr3L 21868674 21868702 INE-1 14 324 2.0 2.5 2.2 4.4 352 chr3L 21868350 intron mub + chr3L 21868526 intron mub + chr3L 21868702 intron mub + chr3L_14_21865001 chr3L_21865001 RAL-799 992 chr3L 21883812 21883839 chr3L 21883892 21883919 7 80 3.0 1.5 2.2 2.2 107 chr3L 21883812 intron mub + chr3L 21883866 intron mub + chr3L 21883919 intron mub + chr3L_7_21880001 chr3L_21880001 RAL-799 993 chr3L 21905333 21905364 chr3L 21905413 21905444 8 79 2.0 4.0 3.0 2.0 111 chr3L 21905333 intron mub + chr3L 21905388 intron mub + chr3L 21905444 intron mub + chr3L_8_21905001 chr3L_21905001 RAL-799 994 chr3L 21918707 21918725 chr3L 21918878 21918900 10 173 1.0 2.0 1.5 4.0 193 chr3L 21918707 intron mub + chr3L 21918804 intron mub + chr3L 21918900 intron mub + chr3L_10_21915001 chr3L_21915001 RAL-799 995 chr3L 22099676 22099704 chr3L 22105862 22105890 3S18 7 6186 2.5 2.5 2.5 2.0 6214 chr3L 22099676 intergenic not near genes chr3L 22102783 intergenic not near genes chr3L 22105890 intergenic not near genes chr3L_7_22100001 chr3L_22100001 RAL-799 996 chr3L 22122169 22122199 chr3L 22122513 22122543 8 340 2.5 3.0 2.8 2.1 374 chr3L 22122169 5` UTR CR45236 + chr3L 22122356 intergenic CR45236 +,CR45235 + chr3L 22122543 intergenic CR45235 +,CR45236 + chr3L_8_22120001 chr3L_22120001 RAL-799 997 chr3L 22241292 22241316 chr3L 22241374 22241398 5 80 3.0 2.0 2.5 1.4 106 chr3L 22241292 intron olf413 + chr3L 22241345 intron olf413 + chr3L 22241398 intron olf413 + chr3L_5_22240001 chr3L_22240001 RAL-799 998 chr3L 22250999 22251027 chr3L 22251092 22251119 5 93 4.0 4.0 4.0 1.0 120 chr3L 22250999 intergenic not near genes chr3L 22251059 intergenic not near genes chr3L 22251119 intergenic not near genes chr3L_5_22250001 chr3L_22250001 RAL-799 999 chr3L 22369316 22369348 chr3L 22369427 22369459 6 110 3.5 2.5 3.0 1.5 143 chr3L 22369316 intron Ten-m - chr3L 22369388 intron Ten-m - chr3L 22369459 intron Ten-m - chr3L_6_22365001 chr3L_22365001 RAL-799 1000 chr3L 22411370 22411396 chr3L 22411447 22411473 10 73 3.0 4.0 3.5 2.2 103 chr3L 22411370 intergenic not near genes chr3L 22411422 intergenic not near genes chr3L 22411473 intergenic not near genes chr3L_10_22410001 chr3L_22410001 RAL-799 1001 chr3L 22447212 22447224 chr3L 22447303 22447315 4 91 0.5 2.5 1.5 1.6 103 chr3L 22447212 intergenic not near genes chr3L 22447264 intergenic not near genes chr3L 22447315 intergenic not near genes chr3L_4_22445001 chr3L_22445001 RAL-799 1002 chr3L 22543079 22543106 chr3L 22543156 22543182 8 76 1.5 1.5 1.5 3.2 103 chr3L 22543079 intergenic not near genes chr3L 22543130 intergenic not near genes chr3L 22543182 intergenic not near genes chr3L_8_22540001 chr3L_22540001 RAL-799 1003 chr3L 22577615 22577642 chr3L 22582401 22582430 Doc 8 4787 3.0 2.5 2.8 2.1 4815 chr3L 22577615 intergenic not near genes chr3L 22580022 intergenic not near genes chr3L 22582430 3` UTR CG14459 - chr3L_8_22580001 chr3L_22580001 RAL-799 1004 chr3L 22617195 22617217 chr3L 22624643 22624668 blood 6 7451 3.0 2.0 2.5 1.7 7473 chr3L 22617195 intron CG14459 - chr3L 22620932 intron CG14459 - chr3L 22624668 intron CG14459 - chr3L_6_22620001 chr3L_22620001 RAL-799 1005 chr3L 22761391 22761414 chr3L 22766821 22766848 Ivk 4 5433 3.5 1.5 2.5 1.1 5457 chr3L 22761391 intron SPoCk + chr3L 22764120 intron SPoCk + chr3L 22766848 intron SPoCk + chr3L_4_22760001 chr3L_22760001 RAL-799 1006 chr3L 22853694 22853719 chr3L 22853780 22853805 11 86 2.5 0.0 1.2 5.0 111 chr3L 22853694 5` UTR CR43426 + chr3L 22853750 5` UTR CR43426 + chr3L 22853805 5` UTR CR43426 + chr3L_11_22850001 chr3L_22850001 RAL-799 1007 chr3L 22865982 22866011 chr3L 22867115 22867144 Doc 5 1132 1.0 2.0 1.5 2.0 1162 chr3L 22865982 intron CG33170 + chr3L 22866563 intron CG33170 + chr3L 22867144 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-799 1008 chr3L 22897203 22897223 chr3L 22897286 22897306 4 83 3.0 7.0 5.0 0.7 103 chr3L 22897203 intergenic not near genes chr3L 22897254 intergenic not near genes chr3L 22897306 intergenic not near genes chr3L_4_22895001 chr3L_22895001 RAL-799 1009 chr3L 19220632 19220636 chr3L 22908066 22908066 19 3687432 16.5 21.5 19.0 0.9 3687434 chr3L 19220632 intron fz2 - chr3L 21064349 intron siz + chr3L 22908066 intergenic not near genes chr3L_19_21060001 chr3L_21060001 RAL-799 1010 chr3L 19220633 19220636 chr3L 22908067 22908067 17 3687433 16.5 21.5 19.0 0.8 3687434 chr3L 19220633 intron fz2 - chr3L 21064350 intron siz + chr3L 22908067 intergenic not near genes chr3L_17_21060001 chr3L_21060001 RAL-799 1011 chr3L 22949198 22949220 chr3L 22949286 22949308 6 88 2.5 1.0 1.8 2.1 110 chr3L 22949198 intron Mes2 + chr3L 22949253 intron Mes2 + chr3L 22949308 intron Mes2 + chr3L_6_22945001 chr3L_22945001 RAL-799 1012 chr3L 23011149 23011165 chr3L 23011226 23011242 8 77 2.5 1.0 1.8 2.9 93 chr3L 23011149 intron nrm + chr3L 23011196 intron nrm + chr3L 23011242 intron nrm + chr3L_8_23010001 chr3L_23010001 RAL-799 1013 chr3L 22908066 22908067 chr3L 23657065 23657066 5 748999 21.5 2.0 11.8 0.4 749000 chr3L 22908066 intergenic not near genes chr3L 23282566 intron nAChRalpha4 + chr3L 23657066 intron AGO3 + chr3L_5_23280001 chr3L_23280001 RAL-799 1014 chr3L 23875533 23875550 chr3L 23875614 23875631 5 81 4.5 3.5 4.0 1.0 98 chr3L 23875533 intron CG40470 - chr3L 23875582 intron CG40470 - chr3L 23875631 intron CG40470 - chr3L_5_23875001 chr3L_23875001 RAL-799 1015 chr3L 24012416 24012430 chr3L 24020757 24020771 roo 5 8340 2.0 4.0 3.0 1.2 8355 chr3L 24012416 intergenic not near genes chr3L 24016594 intergenic not near genes chr3L 24020771 intergenic not near genes chr3L_5_24015001 chr3L_24015001 RAL-799 1016 chr3L 24168631 24168654 chr3L 24176391 24176415 ZAM 10 7759 2.0 1.0 1.5 4.0 7784 chr3L 24168631 intron Snap25 + chr3L 24172523 intron Snap25 + chr3L 24176415 intron Snap25 + chr3L_10_24170001 chr3L_24170001 RAL-799 1017 chr3L 24290486 24290509 chr3L 24290836 24290859 8 350 4.5 3.5 4.0 1.6 373 chr3L 24290486 intron,3` UTR Snap25 +,CR45159 - chr3L 24290672 intron,3` UTR Snap25 +,CR45159 - chr3L 24290859 intron,3` UTR Snap25 +,CR45159 - chr3L_8_24290001 chr3L_24290001 RAL-799 1018 chr3L 25331635 25331651 chr3L 25331726 25331742 7 90 6.0 3.5 4.8 1.2 107 chr3L 25331635 intergenic not near genes chr3L 25331688 intergenic not near genes chr3L 25331742 intergenic not near genes chr3L_7_25330001 chr3L_25330001 RAL-799 1019 chr3L 23289010 23289023 chr3L 25843691 25843704 5 2554681 16.5 9.5 13.0 0.4 2554694 chr3L 23289010 intergenic not near genes chr3L 24566357 intergenic not near genes chr3L 25843704 intron CG40178 - chr3L_5_24565001 chr3L_24565001 RAL-799 1020 chr3L 26717670 26717694 chr3L 26717745 26717770 5 76 2.0 2.5 2.2 1.6 100 chr3L 26717670 intergenic not near genes chr3L 26717720 intergenic not near genes chr3L 26717770 intergenic not near genes chr3L_5_26715001 chr3L_26715001 RAL-799 1021 chr3L 27269434 27269464 chr3L 27269517 27269547 8 82 2.0 1.5 1.8 2.9 113 chr3L 27269434 intergenic not near genes chr3L 27269490 intergenic not near genes chr3L 27269547 intergenic not near genes chr3L_8_27265001 chr3L_27265001 RAL-799 1022 chr3L 22908066 22908066 chr3L 27698695 27698695 micropia 4 4790629 21.5 0.5 11.0 0.3 4790629 chr3L 22908066 intergenic not near genes chr3L 25303380 intron CG40467 - chr3L 27698695 intergenic not near genes chr3L_4_25300001 chr3L_25300001 RAL-799 1023 chr3R 2490914 2490927 chr3R 2491009 2491031 5 97 0.5 2.0 1.2 2.3 117 chr3R 2490914 intergenic not near genes chr3R 2490972 intergenic not near genes chr3R 2491031 intergenic not near genes chr3R_5_2490001 chr3R_2490001 RAL-799 1024 chr3R 2534155 2534163 chr3R 2541703 2541729 6 7564 6.5 13.0 9.8 0.6 7574 chr3R 2534155 intergenic not near genes chr3R 2537942 intergenic not near genes chr3R 2541729 intergenic not near genes chr3R_6_2535001 chr3R_2535001 RAL-799 1025 chr3R 3796853 3796869 chr3R 3797262 3797296 7 421 2.5 4.5 3.5 1.6 443 chr3R 3796853 intergenic not near genes chr3R 3797074 intergenic not near genes chr3R 3797296 intergenic not near genes chr3R_7_3795001 chr3R_3795001 RAL-799 1026 chr3R 4206073 4206100 chr3R 4211649 4211675 mdg3 6 5575 2.0 1.0 1.5 2.4 5602 chr3R 4206073 intron CG14636 - chr3R 4208874 intron CG14636 - chr3R 4211675 intron CG14636 - chr3R_6_4205001 chr3R_4205001 RAL-799 1027 chr3R 4215870 4215896 chr3R 4222624 4222648 6 6753 21.5 16.0 18.8 0.3 6778 chr3R 4215870 intron aux + chr3R 4219259 intron,exon aux +,CG31516 - chr3R 4222648 exon aux + chr3R_6_4215001 chr3R_4215001 RAL-799 1028 chr3R 4366760 4366789 chr3R 4375143 4375172 roo 6 8383 2.5 3.0 2.8 1.6 8412 chr3R 4366760 3` UTR CG1090 + chr3R 4370966 intergenic not near genes chr3R 4375172 5` UTR CR44922 + chr3R_6_4370001 chr3R_4370001 RAL-799 1029 chr3R 4408411 4408425 chr3R 4412715 4412729 Juan 6 4303 0.5 1.0 0.8 3.3 4318 chr3R 4408411 intron CG32944 - chr3R 4410570 intron CG32944 - chr3R 4412729 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-799 1030 chr3R 4609549 4609578 chr3R 4610711 4610742 1360 9 1163 2.5 3.0 2.8 2.4 1193 chr3R 4609549 intergenic not near genes chr3R 4610146 intergenic not near genes chr3R 4610742 intergenic not near genes chr3R_9_4610001 chr3R_4610001 RAL-799 1031 chr3R 4739119 4739147 chr3R 4739196 4739224 10 76 4.0 6.0 5.0 1.7 105 chr3R 4739119 intron tacc - chr3R 4739172 intron tacc - chr3R 4739224 intron tacc - chr3R_10_4735001 chr3R_4735001 RAL-799 1032 chr3R 4887486 4887501 chr3R 4894863 4894878 rover 5 7377 4.5 3.5 4.0 1.0 7392 chr3R 4887486 intergenic not near genes chr3R 4891182 intergenic not near genes chr3R 4894878 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-799 1033 chr3R 4975942 4975965 chr3R 4976043 4976066 6 99 1.0 0.0 0.5 4.0 124 chr3R 4975942 intergenic not near genes chr3R 4976004 intergenic not near genes chr3R 4976066 intergenic not near genes chr3R_6_4975001 chr3R_4975001 RAL-799 1034 chr3R 5045860 5045875 chr3R 5052962 5052977 HMS-Beagle 5 7102 4.5 6.0 5.2 0.8 7117 chr3R 5045860 intron CR43635 - chr3R 5049418 intergenic not near genes chr3R 5052977 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-799 1035 chr3R 5067986 5068014 chr3R 5073503 5073531 mdg3 5 5516 2.5 3.0 2.8 1.3 5545 chr3R 5067986 intergenic not near genes chr3R 5070758 intergenic not near genes chr3R 5073531 intergenic not near genes chr3R_5_5070001 chr3R_5070001 RAL-799 1036 chr3R 5158145 5158176 chr3R 5158238 5158269 8 93 1.0 3.0 2.0 2.7 124 chr3R 5158145 intron dpr16 + chr3R 5158207 intron dpr16 + chr3R 5158269 intron dpr16 + chr3R_8_5155001 chr3R_5155001 RAL-799 1037 chr3R 5191365 5191393 chr3R 5191641 5191669 4 276 26.0 25.0 25.5 0.2 304 chr3R 5191365 intron cno - chr3R 5191517 intron cno - chr3R 5191669 intron cno - chr3R_4_5190001 chr3R_5190001 RAL-799 1038 chr3R 5337738 5337770 chr3R 5338012 5338044 9 274 1.5 2.0 1.8 3.2 306 chr3R 5337738 intron mtd - chr3R 5337891 intron mtd - chr3R 5338044 intron mtd - chr3R_9_5335001 chr3R_5335001 RAL-799 1039 chr3R 5338397 5338432 chr3R 5343574 5343608 Rt1c 15 5177 2.5 5.0 3.8 3.1 5211 chr3R 5338397 intron mtd - chr3R 5341002 intron mtd - chr3R 5343608 intron mtd - chr3R_15_5340001 chr3R_5340001 RAL-799 1040 chr3R 5627148 5627175 chr3R 5627559 5627586 7 409 0.5 2.5 1.5 2.8 438 chr3R 5627148 intergenic not near genes chr3R 5627367 intergenic CG31551 + chr3R 5627586 intergenic CG31551 + chr3R_7_5625001 chr3R_5625001 RAL-799 1041 chr3R 5726101 5726118 chr3R 5726261 5726280 4 162 4.0 3.0 3.5 0.9 179 chr3R 5726101 intergenic not near genes chr3R 5726190 intergenic not near genes chr3R 5726280 intergenic not near genes chr3R_4_5725001 chr3R_5725001 RAL-799 1042 chr3R 5746024 5746044 chr3R 5746265 5746285 pogo 7 241 1.5 5.0 3.2 1.7 261 chr3R 5746024 3` UTR Madm + chr3R 5746154 3` UTR Madm + chr3R 5746285 3` UTR Madm + chr3R_7_5745001 chr3R_5745001 RAL-799 1043 chr3R 5747015 5747047 chr3R 5753206 5753238 diver 6 6191 1.0 2.5 1.8 2.1 6223 chr3R 5747015 intergenic Madm + chr3R 5750126 intergenic not near genes chr3R 5753238 intergenic CG2091 - chr3R_6_5750001 chr3R_5750001 RAL-799 1044 chr3R 5772377 5772406 chr3R 5772535 5772564 10 158 2.5 3.5 3.0 2.5 187 chr3R 5772377 intron CG2082 - chr3R 5772470 intron CG2082 - chr3R 5772564 intron CG2082 - chr3R_10_5770001 chr3R_5770001 RAL-799 1045 chr3R 5809124 5809143 chr3R 5809365 5809384 pogo 6 241 2.5 1.0 1.8 2.1 260 chr3R 5809124 3` UTR CG11000 + chr3R 5809254 3` UTR CG11000 + chr3R 5809384 3` UTR CG11000 + chr3R_6_5805001 chr3R_5805001 RAL-799 1046 chr3R 5822386 5822412 chr3R 5823553 5823579 1360 9 1167 2.0 4.0 3.0 2.2 1193 chr3R 5822386 3` UTR CG2023 - chr3R 5822982 3` UTR CG2023 - chr3R 5823579 3` UTR CG2023 - chr3R_9_5820001 chr3R_5820001 RAL-799 1047 chr3R 5927564 5927592 chr3R 5927804 5927832 pogo 11 240 2.5 3.5 3.0 2.8 268 chr3R 5927564 intron CG34113 - chr3R 5927698 intron CG34113 - chr3R 5927832 intron CG34113 - chr3R_11_5925001 chr3R_5925001 RAL-799 1048 chr3R 5945664 5945670 chr3R 5950530 5950536 4 4866 4.5 5.5 5.0 0.7 4872 chr3R 5945664 intron CG34113 - chr3R 5948100 intron CG34113 - chr3R 5950536 intron CG34113 - chr3R_4_5945001 chr3R_5945001 RAL-799 1049 chr3R 5989336 5989363 chr3R 5989419 5989445 5 83 3.0 4.0 3.5 1.1 109 chr3R 5989336 5` UTR CR44927 + chr3R 5989390 5` UTR CR44927 + chr3R 5989445 5` UTR CR44927 + chr3R_5_5985001 chr3R_5985001 RAL-799 1050 chr3R 6015961 6015991 chr3R 6024442 6024462 Tirant 11 8480 2.5 4.5 3.5 2.4 8501 chr3R 6015961 intergenic not near genes chr3R 6020212 intergenic not near genes chr3R 6024462 intergenic not near genes chr3R_11_6020001 chr3R_6020001 RAL-799 1051 chr3R 6048449 6048478 chr3R 6048532 6048561 8 83 3.5 2.5 3.0 2.0 112 chr3R 6048449 intergenic not near genes chr3R 6048505 intergenic not near genes chr3R 6048561 intergenic not near genes chr3R_8_6045001 chr3R_6045001 RAL-799 1052 chr3R 6117414 6117443 chr3R 6117535 6117550 4 117 2.0 4.0 3.0 1.0 136 chr3R 6117414 intergenic not near genes chr3R 6117482 intergenic not near genes chr3R 6117550 intergenic not near genes chr3R_4_6115001 chr3R_6115001 RAL-799 1053 chr3R 6158511 6158541 chr3R 6167094 6167124 Tirant 8 8583 5.5 1.5 3.5 1.8 8613 chr3R 6158511 intergenic not near genes chr3R 6162818 intergenic not near genes chr3R 6167124 intergenic CG1077 + chr3R_8_6160001 chr3R_6160001 RAL-799 1054 chr3R 6175175 6175205 chr3R 6182447 6182475 HMS-Beagle2 4 7272 1.5 2.0 1.8 1.4 7300 chr3R 6175175 intergenic Osi1 + chr3R 6178825 intron CR45194 + chr3R 6182475 intergenic CR45194 + chr3R_4_6175001 chr3R_6175001 RAL-799 1055 chr3R 6188904 6188932 chr3R 6188981 6189008 5 77 2.0 2.0 2.0 1.7 104 chr3R 6188904 intron NPFR + chr3R 6188956 intron NPFR + chr3R 6189008 5` UTR NPFR + chr3R_5_6185001 chr3R_6185001 RAL-799 1056 chr3R 6191174 6191200 chr3R 6191254 6191275 6 79 3.5 3.0 3.2 1.4 101 chr3R 6191174 intron NPFR + chr3R 6191224 intron NPFR + chr3R 6191275 intron NPFR + chr3R_6_6190001 chr3R_6190001 RAL-799 1057 chr3R 6310394 6310410 chr3R 6310697 6310714 5 303 3.0 1.5 2.2 1.6 320 chr3R 6310394 exon CG31560 + chr3R 6310554 exon CG31560 + chr3R 6310714 exon CG31560 + chr3R_5_6310001 chr3R_6310001 RAL-799 1058 chr3R 6578892 6578915 chr3R 6579012 6579035 10 118 0.0 8.0 4.0 2.0 143 chr3R 6578892 intron dpr11 - chr3R 6578964 intron dpr11 - chr3R 6579035 intron dpr11 - chr3R_10_6575001 chr3R_6575001 RAL-799 1059 chr3R 6737501 6737523 chr3R 6739288 6739310 Doc 4 1787 4.0 3.5 3.8 0.8 1809 chr3R 6737501 intron pb - chr3R 6738406 intron pb - chr3R 6739310 intron pb - chr3R_4_6735001 chr3R_6735001 RAL-799 1060 chr3R 6804201 6804227 chr3R 6804307 6804335 7 108 2.5 3.5 3.0 1.8 134 chr3R 6804201 intergenic not near genes chr3R 6804268 intergenic not near genes chr3R 6804335 intergenic not near genes chr3R_7_6800001 chr3R_6800001 RAL-799 1061 chr3R 6978881 6978907 chr3R 6978966 6978991 6 84 0.0 0.5 0.2 5.0 110 chr3R 6978881 intron Antp - chr3R 6978936 intron Antp - chr3R 6978991 intron Antp - chr3R_6_6975001 chr3R_6975001 RAL-799 1062 chr3R 7092785 7092816 chr3R 7093347 7093380 10 564 2.0 3.0 2.5 2.9 595 chr3R 7092785 3` UTR CR43685 - chr3R 7093082 intron CR43685 - chr3R 7093380 3` UTR CR43685 - chr3R_10_7090001 chr3R_7090001 RAL-799 1063 chr3R 7103285 7103311 chr3R 7103361 7103387 5 76 1.0 3.0 2.0 1.7 102 chr3R 7103285 intron Alh - chr3R 7103336 intron Alh - chr3R 7103387 intron Alh - chr3R_5_7100001 chr3R_7100001 RAL-799 1064 chr3R 7105325 7105350 chr3R 7105408 7105433 8 83 1.0 3.5 2.2 2.5 108 chr3R 7105325 intron Alh - chr3R 7105379 intron Alh - chr3R 7105433 intron Alh - chr3R_8_7105001 chr3R_7105001 RAL-799 1065 chr3R 7126508 7126520 chr3R 7126603 7126613 4 94 4.5 0.5 2.5 1.1 105 chr3R 7126508 3` UTR CG10068 - chr3R 7126560 3` UTR CG10068 - chr3R 7126613 3` UTR CG10068 - chr3R_4_7125001 chr3R_7125001 RAL-799 1066 chr3R 7173685 7173704 chr3R 7173765 7173784 4 80 2.0 1.5 1.8 1.4 99 chr3R 7173685 intron sas + chr3R 7173734 intron sas + chr3R 7173784 intron sas + chr3R_4_7170001 chr3R_7170001 RAL-799 1067 chr3R 7217458 7217481 chr3R 7217679 7217702 6 221 1.0 1.0 1.0 3.0 244 chr3R 7217458 intergenic CG14605 -,CG14606 - chr3R 7217580 intergenic CG14605 -,CG14606 - chr3R 7217702 3` UTR CG14605 - chr3R_6_7215001 chr3R_7215001 RAL-799 1068 chr3R 7269925 7269947 chr3R 7270019 7270041 5 94 0.5 1.5 1.0 2.5 116 chr3R 7269925 3` UTR Syt4 + chr3R 7269983 3` UTR Syt4 + chr3R 7270041 3` UTR Syt4 + chr3R_5_7265001 chr3R_7265001 RAL-799 1069 chr3R 7302299 7302321 chr3R 7302388 7302412 4 89 3.0 3.0 3.0 1.0 113 chr3R 7302299 intron rn - chr3R 7302356 intron rn - chr3R 7302412 intron rn - chr3R_4_7300001 chr3R_7300001 RAL-799 1070 chr3R 7481830 7481845 chr3R 7481907 7481921 6 78 3.5 0.5 2.0 2.0 91 chr3R 7481830 intergenic not near genes chr3R 7481876 intergenic not near genes chr3R 7481921 intergenic not near genes chr3R_6_7480001 chr3R_7480001 RAL-799 1071 chr3R 7556938 7556965 chr3R 7557031 7557058 6 92 1.0 2.5 1.8 2.1 120 chr3R 7556938 intergenic not near genes chr3R 7556998 intergenic not near genes chr3R 7557058 intergenic not near genes chr3R_6_7555001 chr3R_7555001 RAL-799 1072 chr3R 7621551 7621560 chr3R 7621641 7621650 7 90 0.0 6.0 3.0 1.8 99 chr3R 7621551 intron CG34127 - chr3R 7621600 intron CG34127 - chr3R 7621650 intron CG34127 - chr3R_7_7620001 chr3R_7620001 RAL-799 1073 chr3R 7694575 7694598 chr3R 7713636 7713659 invader3 4 19060 0.5 1.5 1.0 2.0 19084 chr3R 7694575 3` UTR Nlg1 + chr3R 7704117 intergenic not near genes chr3R 7713659 intergenic not near genes chr3R_4_7700001 chr3R_7700001 RAL-799 1074 chr3R 7724443 7724475 chr3R 7724533 7724560 7 88 3.0 2.0 2.5 2.0 117 chr3R 7724443 3` UTR CG2616 + chr3R 7724502 3` UTR CG2616 + chr3R 7724560 3` UTR CG2616 + chr3R_7_7720001 chr3R_7720001 RAL-799 1075 chr3R 7729476 7729495 chr3R 7737414 7737433 Stalker2 6 7938 3.0 4.5 3.8 1.2 7957 chr3R 7729476 intergenic not near genes chr3R 7733454 intergenic not near genes chr3R 7737433 intergenic not near genes chr3R_6_7730001 chr3R_7730001 RAL-799 1076 chr3R 7744940 7744950 chr3R 7745205 7745213 4 264 3.0 3.5 3.2 1.0 273 chr3R 7744940 intergenic not near genes chr3R 7745076 intergenic not near genes chr3R 7745213 intergenic not near genes chr3R_4_7745001 chr3R_7745001 RAL-799 1077 chr3R 7830309 7830311 chr3R 7830459 7830462 4 150 3.0 3.5 3.2 1.0 153 chr3R 7830309 intron CG34384 + chr3R 7830386 intron CG34384 + chr3R 7830462 intron CG34384 + chr3R_4_7830001 chr3R_7830001 RAL-799 1078 chr3R 7830312 7830331 chr3R 7830451 7830482 4 146 2.0 2.5 2.2 1.2 170 chr3R 7830312 intron CG34384 + chr3R 7830397 intron CG34384 + chr3R 7830482 intron CG34384 + chr3R_4_7830001 chr3R_7830001 RAL-799 1079 chr3R 7849645 7849660 chr3R 7850812 7850827 1360 4 1167 3.0 1.0 2.0 1.3 1182 chr3R 7849645 intron CG34384 + chr3R 7850236 intron CG34384 + chr3R 7850827 intron CG34384 + chr3R_4_7850001 chr3R_7850001 RAL-799 1080 chr3R 7951467 7951487 chr3R 7951566 7951586 5 99 3.5 4.5 4.0 1.0 119 chr3R 7951467 intron dsx - chr3R 7951526 intron dsx - chr3R 7951586 intron dsx - chr3R_5_7950001 chr3R_7950001 RAL-799 1081 chr3R 8090273 8090303 chr3R 8090450 8090472 5 175 1.5 0.5 1.0 2.5 199 chr3R 8090273 5` UTR CR44330 + chr3R 8090372 intergenic CR44330 + chr3R 8090472 intergenic CR44330 + chr3R_5_8090001 chr3R_8090001 RAL-799 1082 chr3R 8094411 8094439 chr3R 8099716 8099743 Transpac 8 5304 2.0 3.0 2.5 2.3 5332 chr3R 8094411 intron CG7900 + chr3R 8097077 intron CG7900 + chr3R 8099743 intron CG7900 + chr3R_8_8095001 chr3R_8095001 RAL-799 1083 chr3R 8101762 8101791 chr3R 8104846 8104875 G2 10 3084 1.5 1.0 1.2 4.5 3113 chr3R 8101762 exon CG7900 + chr3R 8103318 intron CG7900 + chr3R 8104875 3` UTR CG7900 + chr3R_10_8100001 chr3R_8100001 RAL-799 1084 chr3R 8182650 8182679 chr3R 8182744 8182773 4 94 2.5 2.5 2.5 1.1 123 chr3R 8182650 intergenic not near genes chr3R 8182712 intergenic not near genes chr3R 8182773 intergenic not near genes chr3R_4_8180001 chr3R_8180001 RAL-799 1085 chr3R 8188391 8188517 chr3R 8188476 8188608 9 86 1.0 1.0 1.0 4.5 217 chr3R 8188391 intergenic not near genes chr3R 8188500 intergenic not near genes chr3R 8188608 intergenic not near genes chr3R_9_8185001 chr3R_8185001 RAL-799 1086 chr3R 8207562 8207579 chr3R 8208406 8208420 F-element 5 844 2.5 3.5 3.0 1.2 858 chr3R 8207562 intergenic not near genes chr3R 8207991 intergenic not near genes chr3R 8208420 intergenic not near genes chr3R_5_8205001 chr3R_8205001 RAL-799 1087 chr3R 8339242 8339247 chr3R 21907534 21907536 24 13568289 14.0 15.0 14.5 1.5 13568294 chr3R 8339242 intergenic not near genes chr3R 15123389 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_24_15120001 chr3R_15120001 RAL-799 1088 chr3R 8376370 8376399 chr3R 8376767 8376796 8 397 21.0 13.5 17.2 0.4 426 chr3R 8376370 intron CG45263 - chr3R 8376583 intron CG45263 - chr3R 8376796 intron CG45263 - chr3R_8_8375001 chr3R_8375001 RAL-799 1089 chr3R 8393595 8393603 chr3R 8393656 8393687 7 73 2.0 4.0 3.0 1.8 92 chr3R 8393595 intron CG45263 - chr3R 8393641 intron CG45263 - chr3R 8393687 intron CG45263 - chr3R_7_8390001 chr3R_8390001 RAL-799 1090 chr3R 8403006 8403041 chr3R 8412172 8412207 roo 13 9166 4.5 2.5 3.5 2.9 9201 chr3R 8403006 intron CG45263 - chr3R 8407606 intron CG45263 - chr3R 8412207 intron CG45263 - chr3R_13_8405001 chr3R_8405001 RAL-799 1091 chr3R 8418677 8418698 chr3R 8418781 8418802 9 104 4.0 2.0 3.0 2.2 125 chr3R 8418677 intron CG45263 - chr3R 8418740 intron CG45263 - chr3R 8418802 intron CG45263 - chr3R_9_8415001 chr3R_8415001 RAL-799 1092 chr3R 8541344 8541369 chr3R 8541425 8541450 13 81 4.0 4.5 4.2 2.5 106 chr3R 8541344 intergenic not near genes chr3R 8541397 intergenic not near genes chr3R 8541450 intergenic not near genes chr3R_13_8540001 chr3R_8540001 RAL-799 1093 chr3R 8570484 8570499 chr3R 8575119 8575128 HMS-Beagle 4 4634 1.5 2.0 1.8 1.4 4644 chr3R 8570484 intergenic not near genes chr3R 8572806 intergenic not near genes chr3R 8575128 intergenic not near genes chr3R_4_8570001 chr3R_8570001 RAL-799 1094 chr3R 8579091 8579115 chr3R 8579196 8579220 7 101 2.5 1.5 2.0 2.3 129 chr3R 8579091 intron 5-HT2B + chr3R 8579156 intron 5-HT2B + chr3R 8579220 intron 5-HT2B + chr3R_7_8575001 chr3R_8575001 RAL-799 1095 chr3R 8601768 8601796 chr3R 8610921 8610946 roo 10 9152 2.5 2.5 2.5 2.9 9178 chr3R 8601768 intron 5-HT2B + chr3R 8606357 intron 5-HT2B + chr3R 8610946 intron 5-HT2B + chr3R_10_8605001 chr3R_8605001 RAL-799 1096 chr3R 8636939 8636964 chr3R 8637242 8637267 11 302 0.5 3.5 2.0 3.7 328 chr3R 8636939 intergenic not near genes chr3R 8637103 intergenic not near genes chr3R 8637267 intergenic not near genes chr3R_11_8635001 chr3R_8635001 RAL-799 1097 chr3R 8707364 8707386 chr3R 8709803 8709827 jockey 11 2440 2.5 5.0 3.8 2.3 2463 chr3R 8707364 intergenic not near genes chr3R 8708596 intergenic not near genes chr3R 8709827 intergenic not near genes chr3R_11_8705001 chr3R_8705001 RAL-799 1098 chr3R 8740246 8740273 chr3R 8740335 8740362 6 89 0.5 3.0 1.8 2.1 116 chr3R 8740246 intron CG9801 - chr3R 8740304 intron CG9801 - chr3R 8740362 intron CG9801 - chr3R_6_8740001 chr3R_8740001 RAL-799 1099 chr3R 8745750 8745772 chr3R 8745860 8745883 7 111 2.0 4.0 3.0 1.8 133 chr3R 8745750 intron CG9801 - chr3R 8745816 intron CG9801 - chr3R 8745883 intron CG9801 - chr3R_7_8745001 chr3R_8745001 RAL-799 1100 chr3R 8894876 8894905 chr3R 8896032 8896061 1360 4 1156 2.5 2.0 2.2 1.2 1185 chr3R 8894876 intron pyd - chr3R 8895468 intron pyd - chr3R 8896061 intron pyd - chr3R_4_8895001 chr3R_8895001 RAL-799 1101 chr3R 8997392 8997392 chr3R 8997478 8997481 4 88 3.0 8.0 5.5 0.6 89 chr3R 8997392 intron CG31100 - chr3R 8997436 intron CG31100 - chr3R 8997481 intron CG31100 - chr3R_4_8995001 chr3R_8995001 RAL-799 1102 chr3R 9036377 9036395 chr3R 9036455 9036473 5 78 3.0 1.0 2.0 1.7 96 chr3R 9036377 intron neur - chr3R 9036425 intron neur - chr3R 9036473 intron neur - chr3R_5_9035001 chr3R_9035001 RAL-799 1103 chr3R 9083146 9083174 chr3R 9083228 9083259 7 84 2.5 5.0 3.8 1.5 113 chr3R 9083146 intron pum - chr3R 9083202 intron pum - chr3R 9083259 intron pum - chr3R_7_9080001 chr3R_9080001 RAL-799 1104 chr3R 9101847 9101868 chr3R 9101945 9101966 5 98 2.0 2.0 2.0 1.7 119 chr3R 9101847 intron pum - chr3R 9101906 intron pum - chr3R 9101966 intron pum - chr3R_5_9100001 chr3R_9100001 RAL-799 1105 chr3R 9319578 9319603 chr3R 9320013 9320037 jockey 7 435 5.0 1.5 3.2 1.7 459 chr3R 9319578 intron CG8861 - chr3R 9319808 intron CG8861 - chr3R 9320037 intron CG8861 - chr3R_7_9315001 chr3R_9315001 RAL-799 1106 chr3R 9379169 9379174 chr3R 9379251 9379256 4 82 0.0 5.0 2.5 1.1 87 chr3R 9379169 intron FER - chr3R 9379212 intron FER - chr3R 9379256 intron FER - chr3R_4_9375001 chr3R_9375001 RAL-799 1107 chr3R 9382823 9382839 chr3R 9382948 9382964 4 124 1.5 4.0 2.8 1.1 141 chr3R 9382823 intron FER - chr3R 9382894 intron FER - chr3R 9382964 intron FER - chr3R_4_9380001 chr3R_9380001 RAL-799 1108 chr3R 9611879 9611904 chr3R 9611961 9611986 4 82 1.0 0.0 0.5 2.7 107 chr3R 9611879 intron CG8312 + chr3R 9611932 intron CG8312 + chr3R 9611986 intron CG8312 + chr3R_4_9610001 chr3R_9610001 RAL-799 1109 chr3R 9620956 9620956 chr3R 21907535 21907536 6 12286580 11.0 15.0 13.0 0.4 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-799 1110 chr3R 9857813 9857831 chr3R 9858253 9858271 5 440 2.0 2.5 2.2 1.6 458 chr3R 9857813 intron Teh1 - chr3R 9858042 intron Teh1 - chr3R 9858271 intron Teh1 - chr3R_5_9855001 chr3R_9855001 RAL-799 1111 chr3R 9936873 9936905 chr3R 9936949 9936979 12 76 4.5 3.0 3.8 2.5 106 chr3R 9936873 intron Glut4EF + chr3R 9936926 intron Glut4EF + chr3R 9936979 intron Glut4EF + chr3R_12_9935001 chr3R_9935001 RAL-799 1112 chr3R 10231789 10231814 chr3R 10237366 10237391 mdg3 6 5576 0.5 1.0 0.8 3.3 5602 chr3R 10231789 intron CG42795 + chr3R 10234590 intron CG42795 + chr3R 10237391 intron CG42795 + chr3R_6_10230001 chr3R_10230001 RAL-799 1113 chr3R 10306951 10306980 chr3R 10312210 10312239 9 5259 30.5 9.0 19.8 0.4 5288 chr3R 10306951 exon CG43143 + chr3R 10309595 exon CG6293 - chr3R 10312239 3` UTR Bruce - chr3R_9_10305001 chr3R_10305001 RAL-799 1114 chr3R 10394073 10394100 chr3R 10394171 10394199 6 98 1.5 1.0 1.2 2.7 126 chr3R 10394073 intron cwo + chr3R 10394136 intron cwo + chr3R 10394199 intron cwo + chr3R_6_10390001 chr3R_10390001 RAL-799 1115 chr3R 10430674 10430707 chr3R 10430763 10430796 6 89 2.5 2.0 2.2 1.9 122 chr3R 10430674 intergenic not near genes chr3R 10430735 intergenic not near genes chr3R 10430796 intergenic not near genes chr3R_6_10430001 chr3R_10430001 RAL-799 1116 chr3R 10596630 10596643 chr3R 10596703 10596713 4 73 2.0 2.0 2.0 1.3 83 chr3R 10596630 intron hth - chr3R 10596672 intron hth - chr3R 10596713 intron hth - chr3R_4_10595001 chr3R_10595001 RAL-799 1117 chr3R 10651813 10651840 chr3R 10651912 10651939 6 98 1.5 1.5 1.5 2.4 126 chr3R 10651813 intergenic not near genes chr3R 10651876 intergenic not near genes chr3R 10651939 intergenic not near genes chr3R_6_10650001 chr3R_10650001 RAL-799 1118 chr3R 10723768 10723785 chr3R 10723859 10723876 6 92 3.5 0.5 2.0 2.0 108 chr3R 10723768 intergenic not near genes chr3R 10723822 intergenic not near genes chr3R 10723876 intergenic not near genes chr3R_6_10720001 chr3R_10720001 RAL-799 1119 chr3R 10727643 10727677 chr3R 10727722 10727757 13 79 5.5 1.5 3.5 2.9 114 chr3R 10727643 intergenic not near genes chr3R 10727700 intergenic not near genes chr3R 10727757 intergenic not near genes chr3R_13_10725001 chr3R_10725001 RAL-799 1120 chr3R 10732330 10732345 chr3R 10733202 10733217 4 872 2.0 5.0 3.5 0.9 887 chr3R 10732330 intergenic not near genes chr3R 10732774 intergenic not near genes chr3R 10733217 intergenic not near genes chr3R_4_10730001 chr3R_10730001 RAL-799 1121 chr3R 10868598 10868624 chr3R 10868671 10868702 4 77 0.5 2.5 1.5 1.6 104 chr3R 10868598 5` UTR SelR - chr3R 10868650 intergenic SelR -,Tsp86D + chr3R 10868702 intergenic Tsp86D +,SelR - chr3R_4_10865001 chr3R_10865001 RAL-799 1122 chr3R 10904919 10904929 chr3R 10905123 10905133 4 204 0.5 3.5 2.0 1.3 214 chr3R 10904919 intergenic not near genes chr3R 10905026 intergenic not near genes chr3R 10905133 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-799 1123 chr3R 10906835 10906849 chr3R 10906911 10906924 4 76 1.5 1.0 1.2 1.8 89 chr3R 10906835 intergenic not near genes chr3R 10906880 intergenic not near genes chr3R 10906924 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-799 1124 chr3R 10919683 10919717 chr3R 10919761 10919795 7 78 2.0 2.0 2.0 2.3 112 chr3R 10919683 intergenic not near genes chr3R 10919739 intergenic not near genes chr3R 10919795 intergenic not near genes chr3R_7_10915001 chr3R_10915001 RAL-799 1125 chr3R 10957867 10957885 chr3R 10963252 10963274 Rt1c 6 5388 7.5 4.0 5.8 0.9 5407 chr3R 10957867 intergenic not near genes chr3R 10960570 intergenic not near genes chr3R 10963274 intergenic not near genes chr3R_6_10960001 chr3R_10960001 RAL-799 1126 chr3R 10971482 10971514 chr3R 10971573 10971603 7 91 3.5 3.0 3.2 1.7 121 chr3R 10971482 intergenic not near genes chr3R 10971542 intergenic not near genes chr3R 10971603 intergenic not near genes chr3R_7_10970001 chr3R_10970001 RAL-799 1127 chr3R 11043110 11043124 chr3R 11043216 11043229 5 106 2.5 1.5 2.0 1.7 119 chr3R 11043110 intron CG34114 + chr3R 11043170 intron CG34114 + chr3R 11043229 intron CG34114 + chr3R_5_11040001 chr3R_11040001 RAL-799 1128 chr3R 11087433 11087466 chr3R 11087509 11087542 8 76 3.5 1.5 2.5 2.3 109 chr3R 11087433 intergenic not near genes chr3R 11087488 intergenic not near genes chr3R 11087542 intergenic not near genes chr3R_8_11085001 chr3R_11085001 RAL-799 1129 chr3R 11099660 11099687 chr3R 11099792 11099819 11 132 2.5 2.0 2.2 3.4 159 chr3R 11099660 intergenic not near genes chr3R 11099740 intergenic not near genes chr3R 11099819 intergenic not near genes chr3R_11_11095001 chr3R_11095001 RAL-799 1130 chr3R 11197993 11198014 chr3R 11198092 11198113 4 99 2.0 2.5 2.2 1.2 120 chr3R 11197993 intron cu + chr3R 11198053 intron cu + chr3R 11198113 intron cu + chr3R_4_11195001 chr3R_11195001 RAL-799 1131 chr3R 11220276 11220298 chr3R 11220395 11220417 7 119 4.5 2.5 3.5 1.6 141 chr3R 11220276 3` UTR CG6693 - chr3R 11220346 3` UTR CG6693 - chr3R 11220417 3` UTR CG6693 - chr3R_7_11220001 chr3R_11220001 RAL-799 1132 chr3R 11307188 11307222 chr3R 11307275 11307309 9 86 3.5 4.0 3.8 1.9 121 chr3R 11307188 intergenic not near genes chr3R 11307248 intergenic not near genes chr3R 11307309 intergenic not near genes chr3R_9_11305001 chr3R_11305001 RAL-799 1133 chr3R 11342556 11342574 chr3R 11342632 11342650 7 76 1.5 2.5 2.0 2.3 94 chr3R 11342556 intron pros + chr3R 11342603 intron pros + chr3R 11342650 intron pros + chr3R_7_11340001 chr3R_11340001 RAL-799 1134 chr3R 11379240 11379262 chr3R 11388394 11388417 roo 7 9155 1.0 2.5 1.8 2.5 9177 chr3R 11379240 intron pros + chr3R 11383828 intron pros + chr3R 11388417 intron pros + chr3R_7_11380001 chr3R_11380001 RAL-799 1135 chr3R 11404952 11404971 chr3R 11405030 11405051 9 80 0.0 2.5 1.2 4.1 99 chr3R 11404952 3` UTR pros + chr3R 11405002 3` UTR pros + chr3R 11405051 3` UTR pros + chr3R_9_11405001 chr3R_11405001 RAL-799 1136 chr3R 11442345 11442366 chr3R 11442530 11442551 4 184 4.0 4.5 4.2 0.8 206 chr3R 11442345 intron,intron sals -,CG17230 + chr3R 11442448 intron,intron sals -,CG17230 + chr3R 11442551 intron,intron sals -,CG17230 + chr3R_4_11440001 chr3R_11440001 RAL-799 1137 chr3R 11518815 11518843 chr3R 11518906 11518934 7 90 1.5 3.5 2.5 2.0 119 chr3R 11518815 intergenic not near genes chr3R 11518874 intergenic not near genes chr3R 11518934 intergenic not near genes chr3R_7_11515001 chr3R_11515001 RAL-799 1138 chr3R 11664794 11664820 chr3R 11664886 11664912 7 91 2.0 2.0 2.0 2.3 118 chr3R 11664794 intron CG42327 + chr3R 11664853 intron CG42327 + chr3R 11664912 intron CG42327 + chr3R_7_11660001 chr3R_11660001 RAL-799 1139 chr3R 11694724 11694751 chr3R 11694817 11694844 7 93 3.5 2.0 2.8 1.8 120 chr3R 11694724 intergenic Fer3 - chr3R 11694784 intergenic Fer3 - chr3R 11694844 intergenic not near genes chr3R_7_11690001 chr3R_11690001 RAL-799 1140 chr3R 11740437 11740468 chr3R 11743544 11743575 17 3107 32.5 53.0 42.8 0.4 3138 chr3R 11740437 exon Blm - chr3R 11742006 5` UTR CG14722 + chr3R 11743575 exon CG14722 + chr3R_17_11740001 chr3R_11740001 RAL-799 1141 chr3R 11853457 11853470 chr3R 11853604 11853617 7 147 1.0 4.5 2.8 1.8 160 chr3R 11853457 intron CG6959 - chr3R 11853537 intron CG6959 - chr3R 11853617 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-799 1142 chr3R 11853769 11853796 chr3R 11853874 11853901 10 104 2.5 4.0 3.2 2.4 132 chr3R 11853769 intron CG6959 - chr3R 11853835 intron CG6959 - chr3R 11853901 intron CG6959 - chr3R_10_11850001 chr3R_11850001 RAL-799 1143 chr3R 11957853 11957877 chr3R 11958136 11958158 S-element 4 282 1.0 0.0 0.5 2.7 305 chr3R 11957853 intergenic not near genes chr3R 11958006 intergenic not near genes chr3R 11958158 intergenic not near genes chr3R_4_11955001 chr3R_11955001 RAL-799 1144 chr3R 12022889 12022913 chr3R 12025066 12025090 pogo 8 2176 0.5 3.0 1.8 2.9 2201 chr3R 12022889 intergenic not near genes chr3R 12023990 intergenic not near genes chr3R 12025090 intergenic not near genes chr3R_8_12020001 chr3R_12020001 RAL-799 1145 chr3R 12134962 12134978 chr3R 12135100 12135116 4 138 2.0 0.0 1.0 2.0 154 chr3R 12134962 intergenic not near genes chr3R 12135039 intergenic not near genes chr3R 12135116 intergenic not near genes chr3R_4_12135001 chr3R_12135001 RAL-799 1146 chr3R 12175018 12175028 chr3R 12175382 12175393 4 365 1.5 1.5 1.5 1.6 375 chr3R 12175018 intergenic not near genes chr3R 12175206 intergenic not near genes chr3R 12175393 intergenic not near genes chr3R_4_12175001 chr3R_12175001 RAL-799 1147 chr3R 12267862 12267880 chr3R 12267942 12267960 4 80 0.0 2.5 1.2 1.8 98 chr3R 12267862 intron svp + chr3R 12267911 intron svp + chr3R 12267960 intron svp + chr3R_4_12265001 chr3R_12265001 RAL-799 1148 chr3R 12321971 12322005 chr3R 12322051 12322085 7 80 1.0 1.0 1.0 3.5 114 chr3R 12321971 intergenic not near genes chr3R 12322028 intergenic not near genes chr3R 12322085 intergenic not near genes chr3R_7_12320001 chr3R_12320001 RAL-799 1149 chr3R 12665858 12665893 chr3R 12665933 12665969 14 74 2.5 3.0 2.8 3.7 111 chr3R 12665858 intron CG14395 + chr3R 12665914 intron CG14395 + chr3R 12665969 intron CG14395 + chr3R_14_12665001 chr3R_12665001 RAL-799 1150 chr3R 12720727 12720756 chr3R 12720897 12720926 4 168 1.0 2.0 1.5 1.6 199 chr3R 12720727 intron Men - chr3R 12720826 intron Men - chr3R 12720926 intron Men - chr3R_4_12720001 chr3R_12720001 RAL-799 1151 chr3R 12735809 12735821 chr3R 12735907 12735919 6 98 3.0 1.0 2.0 2.0 110 chr3R 12735809 intergenic not near genes chr3R 12735864 intergenic not near genes chr3R 12735919 intergenic not near genes chr3R_6_12735001 chr3R_12735001 RAL-799 1152 chr3R 12766412 12766438 chr3R 12766496 12766522 8 82 2.5 2.0 2.2 2.5 110 chr3R 12766412 intron beat-Vc - chr3R 12766467 intron beat-Vc - chr3R 12766522 intron beat-Vc - chr3R_8_12765001 chr3R_12765001 RAL-799 1153 chr3R 12825832 12825855 chr3R 12825911 12825935 10 79 1.5 6.0 3.8 2.1 103 chr3R 12825832 intergenic not near genes chr3R 12825884 intergenic not near genes chr3R 12825935 intergenic not near genes chr3R_10_12825001 chr3R_12825001 RAL-799 1154 chr3R 12883794 12883822 chr3R 12883912 12883941 6 118 0.0 2.0 1.0 3.0 147 chr3R 12883794 intergenic not near genes chr3R 12883868 intergenic not near genes chr3R 12883941 intergenic not near genes chr3R_6_12880001 chr3R_12880001 RAL-799 1155 chr3R 12947292 12947318 chr3R 12947454 12947478 7 161 0.5 3.5 2.0 2.3 186 chr3R 12947292 intergenic not near genes chr3R 12947385 intergenic not near genes chr3R 12947478 intergenic not near genes chr3R_7_12945001 chr3R_12945001 RAL-799 1156 chr3R 12972557 12972583 chr3R 12972696 12972722 7 138 0.5 3.5 2.0 2.3 165 chr3R 12972557 intron CG7381 - chr3R 12972640 intron CG7381 - chr3R 12972722 intron CG7381 - chr3R_7_12970001 chr3R_12970001 RAL-799 1157 chr3R 13067837 13067870 chr3R 13067915 13067950 5 79 3.0 1.0 2.0 1.7 113 chr3R 13067837 intron sim + chr3R 13067894 intron sim + chr3R 13067950 intron sim + chr3R_5_13065001 chr3R_13065001 RAL-799 1158 chr3R 13075362 13075388 chr3R 13075443 13075469 7 81 0.0 1.0 0.5 4.7 107 chr3R 13075362 intron sim + chr3R 13075416 intron sim + chr3R 13075469 intron sim + chr3R_7_13075001 chr3R_13075001 RAL-799 1159 chr3R 13138330 13138349 chr3R 13138418 13138437 5 88 0.0 3.5 1.8 1.8 107 chr3R 13138330 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138384 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138437 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13135001 chr3R_13135001 RAL-799 1160 chr3R 13349006 13349033 chr3R 13349082 13349107 8 76 1.5 3.5 2.5 2.3 101 chr3R 13349006 intergenic not near genes chr3R 13349056 intergenic not near genes chr3R 13349107 intergenic not near genes chr3R_8_13345001 chr3R_13345001 RAL-799 1161 chr3R 13364636 13364652 chr3R 13364720 13364736 4 84 1.5 0.0 0.8 2.2 100 chr3R 13364636 intron poly - chr3R 13364686 intron poly - chr3R 13364736 intron poly - chr3R_4_13360001 chr3R_13360001 RAL-799 1162 chr3R 13428890 13428909 chr3R 13429003 13429022 4 113 20.5 18.5 19.5 0.2 132 chr3R 13428890 3` UTR yrt - chr3R 13428956 3` UTR yrt - chr3R 13429022 3` UTR yrt - chr3R_4_13425001 chr3R_13425001 RAL-799 1163 chr3R 13435393 13435416 chr3R 13435568 13435591 5 175 1.0 1.5 1.2 2.3 198 chr3R 13435393 intergenic yrt - chr3R 13435492 intergenic not near genes chr3R 13435591 intergenic not near genes chr3R_5_13435001 chr3R_13435001 RAL-799 1164 chr3R 13517226 13517231 chr3R 13520043 13520048 jockey 4 2817 4.5 0.0 2.2 1.2 2822 chr3R 13517226 intergenic not near genes chr3R 13518637 intergenic not near genes chr3R 13520048 intergenic not near genes chr3R_4_13515001 chr3R_13515001 RAL-799 1165 chr3R 13603054 13603342 chr3R 13603145 13603434 8 91 2.5 3.5 3.0 2.0 380 chr3R 13603054 intergenic not near genes chr3R 13603244 intergenic not near genes chr3R 13603434 intergenic not near genes chr3R_8_13600001 chr3R_13600001 RAL-799 1166 chr3R 13604058 13604087 chr3R 13604293 13604319 7 233 1.0 1.5 1.2 3.2 261 chr3R 13604058 intergenic not near genes chr3R 13604188 intergenic not near genes chr3R 13604319 intergenic not near genes chr3R_7_13600001 chr3R_13600001 RAL-799 1167 chr3R 13672939 13672972 chr3R 13673017 13673047 6 78 1.5 2.0 1.8 2.1 108 chr3R 13672939 intron Task6 - chr3R 13672993 intron Task6 - chr3R 13673047 intron Task6 - chr3R_6_13670001 chr3R_13670001 RAL-799 1168 chr3R 13693028 13693028 chr3R 21907535 21907537 7 8214507 13.5 15.0 14.2 0.5 8214509 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907537 intergenic CG6678 + chr3R_7_17800001 chr3R_17800001 RAL-799 1169 chr3R 13719963 13719985 chr3R 13720422 13720444 7 459 1.0 2.0 1.5 2.8 481 chr3R 13719963 intron CG34383 + chr3R 13720204 intron CG34383 + chr3R 13720444 intron CG34383 + chr3R_7_13720001 chr3R_13720001 RAL-799 1170 chr3R 13830188 13830211 chr3R 13830280 13830297 9 91 2.0 1.5 1.8 3.2 109 chr3R 13830188 intergenic not near genes chr3R 13830242 intergenic not near genes chr3R 13830297 intergenic not near genes chr3R_9_13830001 chr3R_13830001 RAL-799 1171 chr3R 13915683 13915709 chr3R 13916025 13916051 9 342 2.5 1.0 1.8 3.2 368 chr3R 13915683 intergenic not near genes chr3R 13915867 intergenic not near genes chr3R 13916051 intergenic not near genes chr3R_9_13915001 chr3R_13915001 RAL-799 1172 chr3R 13916313 13916340 chr3R 13916397 13916425 8 85 3.0 3.0 3.0 2.0 112 chr3R 13916313 intergenic not near genes chr3R 13916369 intergenic not near genes chr3R 13916425 intergenic not near genes chr3R_8_13915001 chr3R_13915001 RAL-799 1173 chr3R 13975379 13975405 chr3R 13975459 13975485 5 80 3.5 3.0 3.2 1.2 106 chr3R 13975379 intron rdx - chr3R 13975432 intron rdx - chr3R 13975485 intron rdx - chr3R_5_13975001 chr3R_13975001 RAL-799 1174 chr3R 14035314 14035335 chr3R 14035395 14035416 6 81 4.0 2.0 3.0 1.5 102 chr3R 14035314 intron CG9922 - chr3R 14035365 intron CG9922 - chr3R 14035416 intron CG9922 - chr3R_6_14035001 chr3R_14035001 RAL-799 1175 chr3R 14062165 14062196 chr3R 14062241 14062272 4 76 1.5 2.5 2.0 1.3 107 chr3R 14062165 intron foxo + chr3R 14062218 intron foxo + chr3R 14062272 intron foxo + chr3R_4_14060001 chr3R_14060001 RAL-799 1176 chr3R 14067146 14067156 chr3R 14067225 14067235 7 79 1.5 1.0 1.2 3.2 89 chr3R 14067146 exon foxo + chr3R 14067190 intron foxo + chr3R 14067235 intron foxo + chr3R_7_14065001 chr3R_14065001 RAL-799 1177 chr3R 14117436 14117459 chr3R 14117512 14117535 5 76 1.5 2.5 2.0 1.7 99 chr3R 14117436 intron Kif19A - chr3R 14117486 intron Kif19A - chr3R 14117535 intron Kif19A - chr3R_5_14115001 chr3R_14115001 RAL-799 1178 chr3R 14169743 14169771 chr3R 14169824 14169853 8 80 0.0 0.5 0.2 6.7 110 chr3R 14169743 3` UTR Dop1R1 - chr3R 14169798 3` UTR Dop1R1 - chr3R 14169853 3` UTR Dop1R1 - chr3R_8_14165001 chr3R_14165001 RAL-799 1179 chr3R 14257343 14257366 chr3R 14257442 14257462 10 99 0.5 5.0 2.8 2.6 119 chr3R 14257343 intron Aats-met - chr3R 14257402 intron Aats-met - chr3R 14257462 intron Aats-met - chr3R_10_14255001 chr3R_14255001 RAL-799 1180 chr3R 14281085 14281109 chr3R 14281162 14281186 7 76 2.0 2.5 2.2 2.2 101 chr3R 14281085 intron trx - chr3R 14281136 intron trx - chr3R 14281186 intron trx - chr3R_7_14280001 chr3R_14280001 RAL-799 1181 chr3R 14313624 14313657 chr3R 14313720 14313753 10 96 2.0 0.5 1.2 4.5 129 chr3R 14313624 intron CG31321 + chr3R 14313688 intron CG31321 + chr3R 14313753 intron CG31321 + chr3R_10_14310001 chr3R_14310001 RAL-799 1182 chr3R 14363722 14363744 chr3R 14363804 14363826 9 82 3.0 2.0 2.5 2.6 104 chr3R 14363722 intron NK7.1 - chr3R 14363774 intron NK7.1 - chr3R 14363826 intron NK7.1 - chr3R_9_14360001 chr3R_14360001 RAL-799 1183 chr3R 14527402 14527413 chr3R 14527479 14527490 5 77 4.0 2.5 3.2 1.2 88 chr3R 14527402 intron Pde6 - chr3R 14527446 intron Pde6 - chr3R 14527490 intron Pde6 - chr3R_5_14525001 chr3R_14525001 RAL-799 1184 chr3R 14546042 14546071 chr3R 14546118 14546148 5 77 2.0 1.0 1.5 2.0 106 chr3R 14546042 intron Pde6 - chr3R 14546095 intron Pde6 - chr3R 14546148 intron Pde6 - chr3R_5_14545001 chr3R_14545001 RAL-799 1185 chr3R 14556587 14556605 chr3R 14556678 14556696 5 91 0.0 1.5 0.8 2.8 109 chr3R 14556587 intron Pde6 - chr3R 14556642 intron Pde6 - chr3R 14556696 intron Pde6 - chr3R_5_14555001 chr3R_14555001 RAL-799 1186 chr3R 14840947 14840973 chr3R 14841032 14841056 10 83 4.0 5.5 4.8 1.7 109 chr3R 14840947 intron btsz - chr3R 14841002 intron btsz - chr3R 14841056 intron btsz - chr3R_10_14840001 chr3R_14840001 RAL-799 1187 chr3R 14968227 14968242 chr3R 14968327 14968339 4 100 2.5 3.5 3.0 1.0 112 chr3R 14968227 intergenic not near genes chr3R 14968283 intergenic not near genes chr3R 14968339 intergenic not near genes chr3R_4_14965001 chr3R_14965001 RAL-799 1188 chr3R 14971340 14971373 chr3R 14971442 14971475 15 101 5.0 4.0 4.5 2.7 135 chr3R 14971340 intergenic not near genes chr3R 14971408 intergenic not near genes chr3R 14971475 intergenic not near genes chr3R_15_14970001 chr3R_14970001 RAL-799 1189 chr3R 15009144 15009176 chr3R 15009240 15009272 6 95 1.0 1.5 1.2 2.7 128 chr3R 15009144 intergenic not near genes chr3R 15009208 intergenic not near genes chr3R 15009272 intergenic not near genes chr3R_6_15005001 chr3R_15005001 RAL-799 1190 chr3R 15071185 15071218 chr3R 15071310 15071343 8 124 1.5 2.0 1.8 2.9 158 chr3R 15071185 intron dpr9 - chr3R 15071264 intron dpr9 - chr3R 15071343 intron dpr9 - chr3R_8_15070001 chr3R_15070001 RAL-799 1191 chr3R 15102498 15102517 chr3R 15109753 15109772 412 5 7255 0.5 1.0 0.8 2.8 7274 chr3R 15102498 intron CG42788 - chr3R 15106135 intron CG42788 - chr3R 15109772 intron CG42788 - chr3R_5_15105001 chr3R_15105001 RAL-799 1192 chr3R 15160564 15160592 chr3R 15160662 15160690 5 98 2.0 2.0 2.0 1.7 126 chr3R 15160564 intron Gyc88E + chr3R 15160627 intron Gyc88E + chr3R 15160690 intron Gyc88E + chr3R_5_15160001 chr3R_15160001 RAL-799 1193 chr3R 15184538 15184567 chr3R 15184620 15184649 13 81 3.0 2.5 2.8 3.4 111 chr3R 15184538 intron Gyc88E + chr3R 15184594 intron Gyc88E + chr3R 15184649 intron Gyc88E + chr3R_13_15180001 chr3R_15180001 RAL-799 1194 chr3R 15286987 15286987 chr3R 21907535 21907536 4 6620548 13.5 15.0 14.2 0.3 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-799 1195 chr3R 15286988 15286988 chr3R 21907534 21907536 4 6620548 13.5 15.0 14.2 0.3 6620548 chr3R 15286988 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_4_18595001 chr3R_18595001 RAL-799 1196 chr3R 15578086 15578112 chr3R 15578180 15578200 13 93 4.0 3.0 3.5 2.9 114 chr3R 15578086 intergenic not near genes chr3R 15578143 intergenic not near genes chr3R 15578200 intergenic not near genes chr3R_13_15575001 chr3R_15575001 RAL-799 1197 chr3R 15601164 15601196 chr3R 15608686 15608717 412 6 7520 4.0 1.5 2.8 1.6 7553 chr3R 15601164 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608717 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-799 1198 chr3R 15618736 15618764 chr3R 15626210 15626238 blood 5 7474 0.5 2.5 1.5 2.0 7502 chr3R 15618736 intergenic not near genes chr3R 15622487 intergenic not near genes chr3R 15626238 intergenic not near genes chr3R_5_15620001 chr3R_15620001 RAL-799 1199 chr3R 15885733 15885752 chr3R 15885959 15885978 4 226 0.5 3.0 1.8 1.4 245 chr3R 15885733 intergenic not near genes chr3R 15885856 intergenic not near genes chr3R 15885978 intergenic not near genes chr3R_4_15885001 chr3R_15885001 RAL-799 1200 chr3R 15892654 15892689 chr3R 15892735 15892769 8 81 2.5 1.0 1.8 2.9 115 chr3R 15892654 intron CG14877 - chr3R 15892712 intron CG14877 - chr3R 15892769 intron CG14877 - chr3R_8_15890001 chr3R_15890001 RAL-799 1201 chr3R 15937420 15937444 chr3R 15937507 15937516 11 84 3.0 1.5 2.2 3.4 96 chr3R 15937420 intron Sap47 + chr3R 15937468 intron Sap47 + chr3R 15937516 intron Sap47 + chr3R_11_15935001 chr3R_15935001 RAL-799 1202 chr3R 16048857 16048879 chr3R 16048947 16048950 5 86 1.0 2.5 1.8 1.8 93 chr3R 16048857 intron ird5 - chr3R 16048904 intron ird5 - chr3R 16048950 intron ird5 - chr3R_5_16045001 chr3R_16045001 RAL-799 1203 chr3R 16073443 16073464 chr3R 16073547 16073568 6 101 4.5 1.0 2.8 1.6 125 chr3R 16073443 intron Mhcl - chr3R 16073506 intron Mhcl - chr3R 16073568 intron Mhcl - chr3R_6_16070001 chr3R_16070001 RAL-799 1204 chr3R 16159233 16159257 chr3R 16159320 16159326 6 83 4.5 3.5 4.0 1.2 93 chr3R 16159233 intron CG6006 + chr3R 16159280 intron CG6006 + chr3R 16159326 intron CG6006 + chr3R_6_16155001 chr3R_16155001 RAL-799 1205 chr3R 16189408 16189442 chr3R 16189811 16189845 invader4 6 403 0.5 0.0 0.2 5.0 437 chr3R 16189408 intron sra + chr3R 16189626 intron sra + chr3R 16189845 intron sra + chr3R_6_16185001 chr3R_16185001 RAL-799 1206 chr3R 16225087 16225119 chr3R 16225172 16225204 4 85 2.0 1.5 1.8 1.4 117 chr3R 16225087 intergenic not near genes chr3R 16225146 intergenic not near genes chr3R 16225204 intergenic tara + chr3R_4_16225001 chr3R_16225001 RAL-799 1207 chr3R 16374296 16374329 chr3R 16374413 16374446 4 117 4.0 0.5 2.2 1.2 150 chr3R 16374296 intergenic ss - chr3R 16374371 intergenic ss - chr3R 16374446 3` UTR ss - chr3R_4_16370001 chr3R_16370001 RAL-799 1208 chr3R 16472589 16472600 chr3R 16472661 16472676 5 75 2.5 5.5 4.0 1.0 87 chr3R 16472589 intergenic Gyc-89Da + chr3R 16472632 5` UTR Gyc-89Da + chr3R 16472676 5` UTR Gyc-89Da + chr3R_5_16470001 chr3R_16470001 RAL-799 1209 chr3R 16756330 16756350 chr3R 16762521 16762540 diver 5 6191 2.5 5.0 3.8 1.0 6210 chr3R 16756330 intron bxd - chr3R 16759435 intron bxd - chr3R 16762540 intron bxd - chr3R_5_16755001 chr3R_16755001 RAL-799 1210 chr3R 16790120 16790141 chr3R 16790257 16790276 5 136 5.0 4.0 4.5 0.9 156 chr3R 16790120 intergenic Glut3 + chr3R 16790198 intergenic Glut3 + chr3R 16790276 intergenic Glut3 + chr3R_5_16790001 chr3R_16790001 RAL-799 1211 chr3R 16816327 16816345 chr3R 16816499 16816517 4 172 2.0 2.5 2.2 1.2 190 chr3R 16816327 intron abd-A - chr3R 16816422 intron abd-A - chr3R 16816517 intron abd-A - chr3R_4_16815001 chr3R_16815001 RAL-799 1212 chr3R 16820252 16820271 chr3R 16820346 16820365 5 94 3.0 1.5 2.2 1.6 113 chr3R 16820252 intron abd-A - chr3R 16820308 intron abd-A - chr3R 16820365 intron abd-A - chr3R_5_16820001 chr3R_16820001 RAL-799 1213 chr3R 16921842 16921860 chr3R 16921926 16921944 5 84 2.5 1.5 2.0 1.7 102 chr3R 16921842 intron iab-8 - chr3R 16921893 intron iab-8 - chr3R 16921944 intron iab-8 - chr3R_5_16920001 chr3R_16920001 RAL-799 1214 chr3R 17015040 17015066 chr3R 17015158 17015184 7 118 2.0 0.5 1.2 3.2 144 chr3R 17015040 intron Pxd + chr3R 17015112 intron Pxd + chr3R 17015184 intron Pxd + chr3R_7_17015001 chr3R_17015001 RAL-799 1215 chr3R 17027588 17027622 chr3R 17030938 17030973 4 3350 11.0 8.0 9.5 0.4 3385 chr3R 17027588 intron Pxd + chr3R 17029280 exon CG5225 + chr3R 17030973 intergenic CG5225 + chr3R_4_17025001 chr3R_17025001 RAL-799 1216 chr3R 17194408 17194430 chr3R 17194487 17194506 5 78 2.5 2.0 2.2 1.6 98 chr3R 17194408 intron Mur89F - chr3R 17194457 intron Mur89F - chr3R 17194506 intron Mur89F - chr3R_5_17190001 chr3R_17190001 RAL-799 1217 chr3R 17346706 17346716 chr3R 17348269 17348279 F-element 4 1563 2.0 5.5 3.8 0.8 1573 chr3R 17346706 intron beat-IIa - chr3R 17347492 intron beat-IIa - chr3R 17348279 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-799 1218 chr3R 17353464 17353474 chr3R 17353541 17353551 5 77 1.5 2.5 2.0 1.7 87 chr3R 17353464 intron beat-IIa - chr3R 17353508 intron beat-IIa - chr3R 17353551 intron beat-IIa - chr3R_5_17350001 chr3R_17350001 RAL-799 1219 chr3R 17389054 17389054 chr3R 21907534 21907535 4 4518481 8.0 15.0 11.5 0.3 4518481 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907535 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-799 1220 chr3R 17461210 17461230 chr3R 17461292 17461311 4 82 0.5 3.0 1.8 1.4 101 chr3R 17461210 intergenic not near genes chr3R 17461260 intergenic not near genes chr3R 17461311 intergenic not near genes chr3R_4_17460001 chr3R_17460001 RAL-799 1221 chr3R 17634383 17634405 chr3R 17634459 17634481 6 75 1.5 6.5 4.0 1.2 98 chr3R 17634383 intron CG43175 + chr3R 17634432 intron CG43175 + chr3R 17634481 intron CG43175 + chr3R_6_17630001 chr3R_17630001 RAL-799 1222 chr3R 17645703 17645720 chr3R 17645833 17645849 4 130 3.5 2.0 2.8 1.1 146 chr3R 17645703 intergenic CG43175 + chr3R 17645776 intergenic not near genes chr3R 17645849 intergenic not near genes chr3R_4_17645001 chr3R_17645001 RAL-799 1223 chr3R 17767351 17767372 chr3R 17767469 17767492 9 117 3.5 2.5 3.0 2.2 141 chr3R 17767351 intergenic not near genes chr3R 17767422 intergenic not near genes chr3R 17767492 intergenic not near genes chr3R_9_17765001 chr3R_17765001 RAL-799 1224 chr3R 17823211 17823231 chr3R 17823285 17823308 4 76 2.5 3.5 3.0 1.0 97 chr3R 17823211 intron tinc + chr3R 17823260 intron tinc + chr3R 17823308 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-799 1225 chr3R 17899090 17899109 chr3R 17899167 17899187 4 78 3.5 0.0 1.8 1.4 97 chr3R 17899090 intron Rim - chr3R 17899138 intron Rim - chr3R 17899187 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-799 1226 chr3R 17925852 17925888 chr3R 17927319 17927355 hobo 13 1465 2.0 2.5 2.2 4.1 1503 chr3R 17925852 intron cpo + chr3R 17926604 intron cpo + chr3R 17927355 intron cpo + chr3R_13_17925001 chr3R_17925001 RAL-799 1227 chr3R 18025332 18025359 chr3R 18025413 18025440 5 81 1.0 0.5 0.8 2.8 108 chr3R 18025332 3` UTR CG7794 + chr3R 18025386 intergenic CG7794 + chr3R 18025440 intergenic CG7794 + chr3R_5_18025001 chr3R_18025001 RAL-799 1228 chr3R 18032790 18032804 chr3R 18040458 18040472 opus 4 7668 0.5 0.5 0.5 2.7 7682 chr3R 18032790 intergenic not near genes chr3R 18036631 intergenic not near genes chr3R 18040472 intergenic not near genes chr3R_4_18035001 chr3R_18035001 RAL-799 1229 chr3R 18078156 18078178 chr3R 18078235 18078257 4 79 3.5 0.0 1.8 1.4 101 chr3R 18078156 intergenic not near genes chr3R 18078206 intergenic not near genes chr3R 18078257 intergenic not near genes chr3R_4_18075001 chr3R_18075001 RAL-799 1230 chr3R 18379627 18379658 chr3R 18379933 18379964 6 306 2.5 1.0 1.8 2.1 337 chr3R 18379627 intron CG7675 - chr3R 18379796 intron CG7675 - chr3R 18379964 intron CG7675 - chr3R_6_18375001 chr3R_18375001 RAL-799 1231 chr3R 18394475 18394503 chr3R 18394552 18394580 8 77 1.5 2.0 1.8 2.9 105 chr3R 18394475 intron Vha100-2 - chr3R 18394528 intron Vha100-2 - chr3R 18394580 intron Vha100-2 - chr3R_8_18390001 chr3R_18390001 RAL-799 1232 chr3R 18464332 18464339 chr3R 18464470 18464478 5 139 0.0 5.5 2.8 1.3 146 chr3R 18464332 intron fru - chr3R 18464405 intron fru - chr3R 18464478 intron fru - chr3R_5_18460001 chr3R_18460001 RAL-799 1233 chr3R 18501596 18501626 chr3R 18501677 18501707 7 81 2.0 3.0 2.5 2.0 111 chr3R 18501596 intron fru - chr3R 18501652 intron fru - chr3R 18501707 intron fru - chr3R_7_18500001 chr3R_18500001 RAL-799 1234 chr3R 18606502 18606533 chr3R 18610734 18610765 F-element 10 4232 2.0 2.5 2.2 3.1 4263 chr3R 18606502 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610765 intron,intron qin +,CG14304 - chr3R_10_18605001 chr3R_18605001 RAL-799 1235 chr3R 18617713 18617734 chr3R 18617793 18617813 5 80 1.0 1.0 1.0 2.5 100 chr3R 18617713 intron,intron qin +,CG14304 - chr3R 18617763 intron,intron qin +,CG14304 - chr3R 18617813 intron,intron qin +,CG14304 - chr3R_5_18615001 chr3R_18615001 RAL-799 1236 chr3R 18766782 18766810 chr3R 18766858 18766888 13 78 2.0 4.0 3.0 3.2 106 chr3R 18766782 intron CG7720 - chr3R 18766835 intron CG7720 - chr3R 18766888 intron CG7720 - chr3R_13_18765001 chr3R_18765001 RAL-799 1237 chr3R 18785869 18785898 chr3R 18785946 18785975 5 77 2.0 3.5 2.8 1.3 106 chr3R 18785869 intron CG7720 - chr3R 18785922 intron CG7720 - chr3R 18785975 intron CG7720 - chr3R_5_18785001 chr3R_18785001 RAL-799 1238 chr3R 18791495 18791518 chr3R 18791574 18791597 7 79 1.0 1.0 1.0 3.5 102 chr3R 18791495 intron CG7720 - chr3R 18791546 intron CG7720 - chr3R 18791597 intron CG7720 - chr3R_7_18790001 chr3R_18790001 RAL-799 1239 chr3R 18808479 18808500 chr3R 18808556 18808577 4 77 0.5 2.0 1.2 1.8 98 chr3R 18808479 intron CG18208 - chr3R 18808528 intron CG18208 - chr3R 18808577 intron CG18208 - chr3R_4_18805001 chr3R_18805001 RAL-799 1240 chr3R 18812080 18812109 chr3R 18812153 18812187 10 77 4.0 3.5 3.8 2.1 107 chr3R 18812080 intron CG18208 - chr3R 18812134 intron CG18208 - chr3R 18812187 intron CG18208 - chr3R_10_18810001 chr3R_18810001 RAL-799 1241 chr3R 18830062 18830092 chr3R 18830200 18830230 4 138 1.5 1.5 1.5 1.6 168 chr3R 18830062 intron CG18208 - chr3R 18830146 intron CG18208 - chr3R 18830230 intron CG18208 - chr3R_4_18830001 chr3R_18830001 RAL-799 1242 chr3R 18891824 18891844 chr3R 18891906 18891927 5 82 2.0 3.0 2.5 1.4 103 chr3R 18891824 intergenic not near genes chr3R 18891876 intergenic not near genes chr3R 18891927 intergenic not near genes chr3R_5_18890001 chr3R_18890001 RAL-799 1243 chr3R 19014092 19014121 chr3R 19014172 19014201 7 78 2.0 6.0 4.0 1.4 109 chr3R 19014092 intron gukh + chr3R 19014146 intron gukh + chr3R 19014201 intron gukh + chr3R_7_19010001 chr3R_19010001 RAL-799 1244 chr3R 19078118 19078132 chr3R 19078210 19078219 6 91 5.0 4.5 4.8 1.0 101 chr3R 19078118 intron cdi - chr3R 19078168 intron cdi - chr3R 19078219 intron cdi - chr3R_6_19075001 chr3R_19075001 RAL-799 1245 chr3R 19109225 19109247 chr3R 19109337 19109359 8 112 5.0 4.5 4.8 1.4 134 chr3R 19109225 intron CG6040 + chr3R 19109292 intron CG6040 + chr3R 19109359 intron CG6040 + chr3R_8_19105001 chr3R_19105001 RAL-799 1246 chr3R 19117064 19117073 chr3R 19117208 19117217 5 144 7.0 0.0 3.5 1.1 153 chr3R 19117064 intron CG6040 + chr3R 19117140 intron CG6040 + chr3R 19117217 intron CG6040 + chr3R_5_19115001 chr3R_19115001 RAL-799 1247 chr3R 19136406 19136443 chr3R 19139792 19139871 Bari1 5 3395 46.5 11.5 29.0 0.2 3465 chr3R 19136406 exon Cyp12a4 + chr3R 19138138 intergenic not near genes chr3R 19139871 3` UTR Ppcs - chr3R_5_19135001 chr3R_19135001 RAL-799 1248 chr3R 19140265 19140301 chr3R 19140713 19140749 12 447 3.0 2.0 2.5 3.4 484 chr3R 19140265 3` UTR Ppcs - chr3R 19140507 3` UTR Ppcs - chr3R 19140749 3` UTR Ppcs - chr3R_12_19140001 chr3R_19140001 RAL-799 1249 chr3R 19198332 19198360 chr3R 19198454 19198474 12 120 2.0 1.0 1.5 4.8 142 chr3R 19198332 intron CG31475 + chr3R 19198403 intron CG31475 + chr3R 19198474 intron CG31475 + chr3R_12_19195001 chr3R_19195001 RAL-799 1250 chr3R 19220973 19220995 chr3R 19221090 19221111 6 117 0.0 2.0 1.0 3.0 138 chr3R 19220973 intron vib - chr3R 19221042 intron vib - chr3R 19221111 intron vib - chr3R_6_19220001 chr3R_19220001 RAL-799 1251 chr3R 19265492 19265675 chr3R 19265553 19265757 6 78 2.0 0.0 1.0 3.0 265 chr3R 19265492 intergenic not near genes chr3R 19265624 intergenic not near genes chr3R 19265757 intergenic not near genes chr3R_6_19265001 chr3R_19265001 RAL-799 1252 chr3R 19340398 19340427 chr3R 19340473 19340504 4 76 3.0 1.5 2.2 1.2 106 chr3R 19340398 intergenic not near genes chr3R 19340451 intergenic not near genes chr3R 19340504 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-799 1253 chr3R 19344669 19344696 chr3R 19344804 19344831 4 135 1.0 1.0 1.0 2.0 162 chr3R 19344669 intergenic not near genes chr3R 19344750 intergenic not near genes chr3R 19344831 intergenic not near genes chr3R_4_19340001 chr3R_19340001 RAL-799 1254 chr3R 19486179 19486213 chr3R 19486350 19486384 9 170 1.0 0.0 0.5 6.0 205 chr3R 19486179 intron Dys + chr3R 19486282 intron Dys + chr3R 19486384 intron Dys + chr3R_9_19485001 chr3R_19485001 RAL-799 1255 chr3R 19602755 19602790 chr3R 19602833 19602868 5 78 1.5 0.0 0.8 2.8 113 chr3R 19602755 intergenic CG7333 + chr3R 19602812 intergenic CG7333 + chr3R 19602868 intergenic CG7333 + chr3R_5_19600001 chr3R_19600001 RAL-799 1256 chr3R 19783189 19783211 chr3R 19783277 19783299 4 88 0.0 2.0 1.0 2.0 110 chr3R 19783189 intergenic CG11407 +,CG11453 + chr3R 19783244 intergenic CG11407 +,CG11453 + chr3R 19783299 intergenic CG11407 +,CG11453 + chr3R_4_19780001 chr3R_19780001 RAL-799 1257 chr3R 19793892 19793926 chr3R 19793985 19794019 10 93 2.5 1.5 2.0 3.3 127 chr3R 19793892 intergenic bnl - chr3R 19793956 intergenic bnl - chr3R 19794019 intergenic bnl - chr3R_10_19790001 chr3R_19790001 RAL-799 1258 chr3R 19839530 19839560 chr3R 19839761 19839792 10 232 1.5 1.0 1.2 4.5 262 chr3R 19839530 intergenic not near genes chr3R 19839661 intergenic not near genes chr3R 19839792 intergenic not near genes chr3R_10_19835001 chr3R_19835001 RAL-799 1259 chr3R 19908274 19908298 chr3R 19908358 19908382 6 84 0.0 3.5 1.8 2.1 108 chr3R 19908274 intron RhoGAP92B + chr3R 19908328 intron RhoGAP92B + chr3R 19908382 intron RhoGAP92B + chr3R_6_19905001 chr3R_19905001 RAL-799 1260 chr3R 19914011 19914039 chr3R 19914104 19914132 6 93 2.0 1.5 1.8 2.1 121 chr3R 19914011 3` UTR RhoGAP92B + chr3R 19914072 3` UTR RhoGAP92B + chr3R 19914132 3` UTR RhoGAP92B + chr3R_6_19910001 chr3R_19910001 RAL-799 1261 chr3R 19943881 19943900 chr3R 19943961 19943978 4 79 2.0 0.0 1.0 2.0 97 chr3R 19943881 intron Hs6st - chr3R 19943930 intron Hs6st - chr3R 19943978 intron Hs6st - chr3R_4_19940001 chr3R_19940001 RAL-799 1262 chr3R 20041110 20041148 chr3R 20041211 20041241 10 99 2.5 2.0 2.2 3.1 131 chr3R 20041110 intron CG17193 - chr3R 20041176 intron CG17193 - chr3R 20041241 intron CG17193 - chr3R_10_20040001 chr3R_20040001 RAL-799 1263 chr3R 20109545 20109567 chr3R 20114751 20114773 copia 5 5206 1.0 2.0 1.5 2.0 5228 chr3R 20109545 intergenic not near genes chr3R 20112159 intergenic not near genes chr3R 20114773 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-799 1264 chr3R 20146313 20146345 chr3R 20146634 20146666 8 321 0.5 2.5 1.5 3.2 353 chr3R 20146313 intergenic not near genes chr3R 20146490 intergenic not near genes chr3R 20146666 intergenic not near genes chr3R_8_20145001 chr3R_20145001 RAL-799 1265 chr3R 20156694 20156711 chr3R 20165864 20165881 roo 4 9170 3.0 2.5 2.8 1.1 9187 chr3R 20156694 intergenic not near genes chr3R 20161288 intergenic not near genes chr3R 20165881 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-799 1266 chr3R 20209802 20209833 chr3R 20209888 20209919 7 86 0.5 1.5 1.0 3.5 117 chr3R 20209802 intron Nlg4 + chr3R 20209860 intron Nlg4 + chr3R 20209919 intron Nlg4 + chr3R_7_20205001 chr3R_20205001 RAL-799 1267 chr3R 20266515 20266536 chr3R 20272986 20273007 Burdock 4 6471 4.5 1.0 2.8 1.1 6492 chr3R 20266515 intron cic + chr3R 20269761 intron cic + chr3R 20273007 intron cic + chr3R_4_20265001 chr3R_20265001 RAL-799 1268 chr3R 20286149 20286178 chr3R 20286256 20286285 10 107 3.0 0.0 1.5 4.0 136 chr3R 20286149 intron cic + chr3R 20286217 intron cic + chr3R 20286285 intron cic + chr3R_10_20285001 chr3R_20285001 RAL-799 1269 chr3R 20308192 20308203 chr3R 20308280 20308291 8 88 1.5 0.0 0.8 4.4 99 chr3R 20308192 intergenic not near genes chr3R 20308242 intergenic not near genes chr3R 20308291 intergenic not near genes chr3R_8_20305001 chr3R_20305001 RAL-799 1270 chr3R 20391749 20391767 chr3R 20391845 20391862 4 96 0.0 3.5 1.8 1.4 113 chr3R 20391749 intron Gfrl - chr3R 20391806 intron Gfrl - chr3R 20391862 intron Gfrl - chr3R_4_20390001 chr3R_20390001 RAL-799 1271 chr3R 20594480 20594494 chr3R 20594570 20594584 6 90 2.5 0.0 1.2 2.7 104 chr3R 20594480 intron bon + chr3R 20594532 intron bon + chr3R 20594584 intron bon + chr3R_6_20590001 chr3R_20590001 RAL-799 1272 chr3R 20684220 20684240 chr3R 20684304 20684324 6 84 0.0 3.0 1.5 2.4 104 chr3R 20684220 intergenic not near genes chr3R 20684272 intergenic not near genes chr3R 20684324 intergenic not near genes chr3R_6_20680001 chr3R_20680001 RAL-799 1273 chr3R 20707750 20707759 chr3R 20707965 20707974 5 215 3.0 2.0 2.5 1.4 224 chr3R 20707750 intron Oamb - chr3R 20707862 intron Oamb - chr3R 20707974 intron Oamb - chr3R_5_20705001 chr3R_20705001 RAL-799 1274 chr3R 20735007 20735049 chr3R 20735092 20735117 11 79 2.0 3.5 2.8 2.9 110 chr3R 20735007 intergenic not near genes chr3R 20735062 intergenic not near genes chr3R 20735117 intergenic not near genes chr3R_11_20735001 chr3R_20735001 RAL-799 1275 chr3R 20764413 20764443 chr3R 20764509 20764539 5 96 1.0 2.5 1.8 1.8 126 chr3R 20764413 intron Syp + chr3R 20764476 intron Syp + chr3R 20764539 intron Syp + chr3R_5_20760001 chr3R_20760001 RAL-799 1276 chr3R 20787449 20787456 chr3R 20787540 20787546 5 91 1.5 2.5 2.0 1.7 97 chr3R 20787449 intron Syp + chr3R 20787498 intron Syp + chr3R 20787546 intron Syp + chr3R_5_20785001 chr3R_20785001 RAL-799 1277 chr3R 20870255 20870279 chr3R 20870340 20870364 11 85 2.5 2.0 2.2 3.4 109 chr3R 20870255 intergenic not near genes chr3R 20870310 intergenic not near genes chr3R 20870364 intergenic not near genes chr3R_11_20870001 chr3R_20870001 RAL-799 1278 chr3R 20946887 20946902 chr3R 20946967 20946981 8 80 3.0 1.5 2.2 2.5 94 chr3R 20946887 intergenic not near genes chr3R 20946934 intergenic not near genes chr3R 20946981 intergenic not near genes chr3R_8_20945001 chr3R_20945001 RAL-799 1279 chr3R 20958389 20958421 chr3R 20958490 20958522 14 101 3.5 0.5 2.0 4.7 133 chr3R 20958389 intron Atpalpha + chr3R 20958456 intron Atpalpha + chr3R 20958522 intron Atpalpha + chr3R_14_20955001 chr3R_20955001 RAL-799 1280 chr3R 20966131 20966147 chr3R 20966214 20966226 7 82 0.0 1.5 0.8 3.9 95 chr3R 20966131 intron Atpalpha + chr3R 20966178 intron Atpalpha + chr3R 20966226 intron Atpalpha + chr3R_7_20965001 chr3R_20965001 RAL-799 1281 chr3R 21014018 21014044 chr3R 21014096 21014121 11 78 3.5 2.5 3.0 2.8 103 chr3R 21014018 3` UTR Calx + chr3R 21014070 3` UTR Calx + chr3R 21014121 3` UTR Calx + chr3R_11_21010001 chr3R_21010001 RAL-799 1282 chr3R 21020406 21020432 chr3R 21020481 21020506 5 75 0.0 1.5 0.8 2.8 100 chr3R 21020406 3` UTR Rlip + chr3R 21020456 3` UTR Rlip + chr3R 21020506 3` UTR Rlip + chr3R_5_21020001 chr3R_21020001 RAL-799 1283 chr3R 21048377 21048409 chr3R 21051418 21051450 11 3041 25.5 13.0 19.2 0.5 3073 chr3R 21048377 exon CG7079 - chr3R 21049914 intergenic CG17279 - chr3R 21051450 3` UTR Mvl - chr3R_11_21045001 chr3R_21045001 RAL-799 1284 chr3R 21129823 21129837 chr3R 21129912 21129925 6 89 0.5 0.0 0.2 5.0 102 chr3R 21129823 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129874 intergenic Obp93a -,CG5793 +,Ice2 + chr3R 21129925 intergenic Obp93a -,Ice2 +,CG5793 + chr3R_6_21125001 chr3R_21125001 RAL-799 1285 chr3R 21141683 21141699 chr3R 21150163 21150180 Tirant 4 8476 3.5 3.0 3.2 1.0 8497 chr3R 21141683 intron SNF4Agamma + chr3R 21145932 intron SNF4Agamma + chr3R 21150180 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-799 1286 chr3R 21154549 21154587 chr3R 21154754 21154802 4 207 1.0 0.0 0.5 2.7 253 chr3R 21154549 intron SNF4Agamma + chr3R 21154676 intron SNF4Agamma + chr3R 21154802 intron SNF4Agamma + chr3R_4_21150001 chr3R_21150001 RAL-799 1287 chr3R 21385933 21385963 chr3R 21386009 21386040 11 77 3.0 1.5 2.2 3.4 107 chr3R 21385933 intergenic not near genes chr3R 21385986 intergenic not near genes chr3R 21386040 intergenic not near genes chr3R_11_21385001 chr3R_21385001 RAL-799 1288 chr3R 21388902 21388937 chr3R 21389000 21389035 10 98 1.0 2.5 1.8 3.6 133 chr3R 21388902 5` UTR bap + chr3R 21388968 5` UTR bap + chr3R 21389035 exon bap + chr3R_10_21385001 chr3R_21385001 RAL-799 1289 chr3R 21472023 21472035 chr3R 21472101 21472116 5 80 3.0 5.5 4.2 1.0 93 chr3R 21472023 intergenic not near genes chr3R 21472070 intergenic not near genes chr3R 21472116 intergenic not near genes chr3R_5_21470001 chr3R_21470001 RAL-799 1290 chr3R 21519990 21520135 chr3R 21520091 21520229 6 98 1.5 2.0 1.8 2.1 239 chr3R 21519990 intergenic not near genes chr3R 21520110 intergenic not near genes chr3R 21520229 intergenic not near genes chr3R_6_21520001 chr3R_21520001 RAL-799 1291 chr3R 21733552 21733582 chr3R 21733632 21733662 6 79 12.5 11.0 11.8 0.5 110 chr3R 21733552 intergenic not near genes chr3R 21733607 intergenic not near genes chr3R 21733662 intergenic not near genes chr3R_6_21730001 chr3R_21730001 RAL-799 1292 chr3R 21761120 21761151 chr3R 21768512 21768543 mdg1 13 7391 3.5 6.0 4.8 2.2 7423 chr3R 21761120 exon CG42335 + chr3R 21764832 intron CG42335 + chr3R 21768543 exon CG42335 + chr3R_13_21760001 chr3R_21760001 RAL-799 1293 chr3R 21784863 21784888 chr3R 21784961 21784984 7 97 2.0 0.0 1.0 3.5 121 chr3R 21784863 3` UTR,3` UTR CASK -,CRG - chr3R 21784924 3` UTR,3` UTR CASK -,CRG - chr3R 21784984 3` UTR,3` UTR CASK -,CRG - chr3R_7_21780001 chr3R_21780001 RAL-799 1294 chr3R 21800490 21800519 chr3R 21800575 21800604 7 85 1.5 2.5 2.0 2.3 114 chr3R 21800490 intron CASK - chr3R 21800547 intron CASK - chr3R 21800604 intron CASK - chr3R_7_21800001 chr3R_21800001 RAL-799 1295 chr3R 8339246 8339247 chr3R 21907534 21907534 10 13568288 14.0 15.0 14.5 0.6 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_10_15120001 chr3R_15120001 RAL-799 1296 chr3R 9620954 9620956 chr3R 21907534 21907534 6 12286579 11.0 15.0 13.0 0.4 12286580 chr3R 9620954 intron CG8312 + chr3R 15764244 intergenic not near genes chr3R 21907534 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-799 1297 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 8.0 15.0 11.5 0.3 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-799 1298 chr3R 21907534 21907534 chr3R 28831801 28831803 43 6924268 19.0 20.0 19.5 2.1 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_43_25365001 chr3R_25365001 RAL-799 1299 chr3R 8339246 8339247 chr3R 21907535 21907535 8 13568288 14.0 15.0 14.5 0.5 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_8_15120001 chr3R_15120001 RAL-799 1300 chr3R 9620955 9620956 chr3R 21907535 21907535 9 12286579 11.0 15.0 13.0 0.6 12286580 chr3R 9620955 intron CG8312 + chr3R 15764245 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_9_15760001 chr3R_15760001 RAL-799 1301 chr3R 13104419 13104420 chr3R 21907535 21907535 4 8803115 14.5 15.0 14.8 0.3 8803116 chr3R 13104419 intron timeout + chr3R 17505977 intergenic Dscam3 - chr3R 21907535 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-799 1302 chr3R 21907535 21907535 chr3R 28831801 28831804 94 6924266 19.0 20.0 19.5 4.6 6924269 chr3R 21907535 intergenic CG6678 + chr3R 25369670 intron Fur1 - chr3R 28831804 intron WASp - chr3R_94_25365001 chr3R_25365001 RAL-799 1303 chr3R 9620956 9620957 chr3R 21907536 21907536 6 12286580 11.0 15.5 13.2 0.4 12286580 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907536 intergenic CG6678 + chr3R_6_15760001 chr3R_15760001 RAL-799 1304 chr3R 21907536 21907536 chr3R 28831799 28831802 60 6924266 19.0 19.0 19.0 3.0 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_60_25365001 chr3R_25365001 RAL-799 1305 chr3R 21985229 21985256 chr3R 21985332 21985361 5 102 1.5 0.0 0.8 2.8 132 chr3R 21985229 intron Eip93F + chr3R 21985295 intron Eip93F + chr3R 21985361 intron Eip93F + chr3R_5_21985001 chr3R_21985001 RAL-799 1306 chr3R 22108356 22108382 chr3R 22108588 22108597 5 229 3.0 5.0 4.0 1.0 241 chr3R 22108356 intron CG5778 - chr3R 22108476 intron CG5778 - chr3R 22108597 intron CG5778 - chr3R_5_22105001 chr3R_22105001 RAL-799 1307 chr3R 22161942 22161976 chr3R 22163003 22163037 12 1061 2.5 2.0 2.2 3.8 1095 chr3R 22161942 intron SKIP + chr3R 22162490 intron SKIP + chr3R 22163037 intron SKIP + chr3R_12_22160001 chr3R_22160001 RAL-799 1308 chr3R 22200904 22200933 chr3R 22200987 22201015 11 83 2.5 2.5 2.5 3.1 111 chr3R 22200904 intron,intron SKIP +,CR45224 - chr3R 22200960 intron,intron SKIP +,CR45224 - chr3R 22201015 intron,intron SKIP +,CR45224 - chr3R_11_22200001 chr3R_22200001 RAL-799 1309 chr3R 22286155 22286162 chr3R 22286232 22286239 4 77 0.5 3.5 2.0 1.3 84 chr3R 22286155 intron SKIP + chr3R 22286197 intron SKIP + chr3R 22286239 intron SKIP + chr3R_4_22285001 chr3R_22285001 RAL-799 1310 chr3R 22450548 22450573 chr3R 22453188 22453210 NOF 8 2639 1.5 3.0 2.2 2.5 2662 chr3R 22450548 intron CG34376 + chr3R 22451879 intron CG34376 + chr3R 22453210 intron CG34376 + chr3R_8_22450001 chr3R_22450001 RAL-799 1311 chr3R 22495215 22495242 chr3R 22495334 22495359 8 118 7.0 4.0 5.5 1.2 144 chr3R 22495215 intergenic not near genes chr3R 22495287 intergenic not near genes chr3R 22495359 intergenic not near genes chr3R_8_22495001 chr3R_22495001 RAL-799 1312 chr3R 22538441 22538474 chr3R 22538526 22538558 14 85 2.0 1.0 1.5 5.6 117 chr3R 22538441 intron CG5326 - chr3R 22538500 intron CG5326 - chr3R 22538558 intron CG5326 - chr3R_14_22535001 chr3R_22535001 RAL-799 1313 chr3R 22659487 22659508 chr3R 22660007 22660030 11 522 3.5 4.5 4.0 2.2 543 chr3R 22659487 intron wake + chr3R 22659758 intron wake + chr3R 22660030 intron wake + chr3R_11_22655001 chr3R_22655001 RAL-799 1314 chr3R 22673619 22673635 chr3R 22673757 22673773 5 138 2.5 1.5 2.0 1.7 154 chr3R 22673619 intron wake + chr3R 22673696 intron wake + chr3R 22673773 intron wake + chr3R_5_22670001 chr3R_22670001 RAL-799 1315 chr3R 22797775 22797937 chr3R 22797854 22798033 10 92 0.0 0.0 0.0 10.0 258 chr3R 22797775 intergenic not near genes chr3R 22797904 intergenic not near genes chr3R 22798033 intergenic not near genes chr3R_10_22795001 chr3R_22795001 RAL-799 1316 chr3R 22860156 22860176 chr3R 22860247 22860267 11 91 4.0 1.5 2.8 2.9 111 chr3R 22860156 intergenic not near genes chr3R 22860212 intergenic not near genes chr3R 22860267 intergenic not near genes chr3R_11_22860001 chr3R_22860001 RAL-799 1317 chr3R 22927697 22927714 chr3R 22927781 22927798 7 84 2.0 3.5 2.8 1.8 101 chr3R 22927697 intron klg + chr3R 22927748 intron klg + chr3R 22927798 intron klg + chr3R_7_22925001 chr3R_22925001 RAL-799 1318 chr3R 22968674 22968683 chr3R 22968776 22968786 4 103 6.0 3.5 4.8 0.7 112 chr3R 22968674 intergenic not near genes chr3R 22968730 intergenic not near genes chr3R 22968786 intergenic not near genes chr3R_4_22965001 chr3R_22965001 RAL-799 1319 chr3R 22968685 22968693 chr3R 22968774 22968795 6 100 4.0 3.5 3.8 1.2 110 chr3R 22968685 intergenic not near genes chr3R 22968740 intergenic not near genes chr3R 22968795 intergenic not near genes chr3R_6_22965001 chr3R_22965001 RAL-799 1320 chr3R 22971260 22971268 chr3R 22971354 22971362 4 94 2.0 7.0 4.5 0.7 102 chr3R 22971260 intergenic not near genes chr3R 22971311 intergenic not near genes chr3R 22971362 intergenic not near genes chr3R_4_22970001 chr3R_22970001 RAL-799 1321 chr3R 22979754 22979778 chr3R 22979835 22979859 6 80 4.0 4.0 4.0 1.2 105 chr3R 22979754 intergenic not near genes chr3R 22979806 intergenic not near genes chr3R 22979859 intergenic not near genes chr3R_6_22975001 chr3R_22975001 RAL-799 1322 chr3R 23073135 23073164 chr3R 23073219 23073248 8 81 4.5 3.5 4.0 1.6 113 chr3R 23073135 intron CG13830 - chr3R 23073192 intron CG13830 - chr3R 23073248 intron CG13830 - chr3R_8_23070001 chr3R_23070001 RAL-799 1323 chr3R 23090404 23090433 chr3R 23090486 23090516 5 82 0.5 3.0 1.8 1.8 112 chr3R 23090404 intron CG13830 - chr3R 23090460 intron CG13830 - chr3R 23090516 intron CG13830 - chr3R_5_23090001 chr3R_23090001 RAL-799 1324 chr3R 23105742 23105754 chr3R 23105877 23105892 8 137 3.5 4.0 3.8 1.7 150 chr3R 23105742 intron CG13830 - chr3R 23105817 intron CG13830 - chr3R 23105892 intron CG13830 - chr3R_8_23105001 chr3R_23105001 RAL-799 1325 chr3R 23241966 23241985 chr3R 23242294 23242313 6 328 3.5 1.5 2.5 1.7 347 chr3R 23241966 intron CG4467 - chr3R 23242140 intron CG4467 - chr3R 23242313 intron CG4467 - chr3R_6_23240001 chr3R_23240001 RAL-799 1326 chr3R 23335438 23335461 chr3R 23335515 23335539 8 78 2.5 4.5 3.5 1.8 101 chr3R 23335438 intron pnt - chr3R 23335488 intron pnt - chr3R 23335539 intron pnt - chr3R_8_23335001 chr3R_23335001 RAL-799 1327 chr3R 23421993 23422011 chr3R 23422078 23422096 8 84 2.0 8.0 5.0 1.3 103 chr3R 23421993 intron CG4374 - chr3R 23422044 intron CG4374 - chr3R 23422096 intron CG4374 - chr3R_8_23420001 chr3R_23420001 RAL-799 1328 chr3R 23432435 23432447 chr3R 23432530 23432542 6 95 3.0 1.0 2.0 2.0 107 chr3R 23432435 intron CG4374 - chr3R 23432488 intron CG4374 - chr3R 23432542 intron CG4374 - chr3R_6_23430001 chr3R_23430001 RAL-799 1329 chr3R 23432448 23432466 chr3R 23432527 23432561 6 92 1.5 0.5 1.0 3.0 113 chr3R 23432448 intron CG4374 - chr3R 23432504 intron CG4374 - chr3R 23432561 intron CG4374 - chr3R_6_23430001 chr3R_23430001 RAL-799 1330 chr3R 23497961 23497972 chr3R 23498041 23498055 7 83 4.0 4.0 4.0 1.4 94 chr3R 23497961 intergenic not near genes chr3R 23498008 intergenic not near genes chr3R 23498055 intergenic not near genes chr3R_7_23495001 chr3R_23495001 RAL-799 1331 chr3R 23558403 23558420 chr3R 23560184 23560201 Bari1 4 1781 3.5 2.5 3.0 1.0 1798 chr3R 23558403 intron beat-IV + chr3R 23559302 intron beat-IV + chr3R 23560201 intron beat-IV + chr3R_4_23555001 chr3R_23555001 RAL-799 1332 chr3R 23564447 23564474 chr3R 23564591 23564618 4 144 3.0 2.0 2.5 1.1 171 chr3R 23564447 intron beat-IV + chr3R 23564532 intron beat-IV + chr3R 23564618 intron beat-IV + chr3R_4_23560001 chr3R_23560001 RAL-799 1333 chr3R 23572760 23572780 chr3R 23572880 23572900 9 119 0.5 2.5 1.5 3.6 140 chr3R 23572760 intron beat-IV + chr3R 23572830 intron beat-IV + chr3R 23572900 intron beat-IV + chr3R_9_23570001 chr3R_23570001 RAL-799 1334 chr3R 23582797 23582820 chr3R 23582883 23582906 7 84 3.0 1.0 2.0 2.3 109 chr3R 23582797 intergenic not near genes chr3R 23582852 intergenic not near genes chr3R 23582906 intergenic not near genes chr3R_7_23580001 chr3R_23580001 RAL-799 1335 chr3R 23684699 23684729 chr3R 23685184 23685212 roo 14 483 3.5 6.0 4.8 2.4 513 chr3R 23684699 exon CG18754 + chr3R 23684956 intron CG18754 + chr3R 23685212 exon CG18754 + chr3R_14_23680001 chr3R_23680001 RAL-799 1336 chr3R 23688472 23688502 chr3R 23688562 23688593 7 88 2.5 5.5 4.0 1.4 121 chr3R 23688472 intergenic SPE + chr3R 23688532 intergenic SPE +,CG10254 - chr3R 23688593 intergenic CG10254 -,SPE + chr3R_7_23685001 chr3R_23685001 RAL-799 1337 chr3R 23783254 23783272 chr3R 23783340 23783343 4 82 3.0 2.5 2.8 1.1 89 chr3R 23783254 intron mbc + chr3R 23783298 intron mbc + chr3R 23783343 intron mbc + chr3R_4_23780001 chr3R_23780001 RAL-799 1338 chr3R 23783638 23783670 chr3R 23783714 23783746 6 76 1.0 1.0 1.0 3.0 108 chr3R 23783638 intron mbc + chr3R 23783692 intron mbc + chr3R 23783746 intron mbc + chr3R_6_23780001 chr3R_23780001 RAL-799 1339 chr3R 23835410 23835427 chr3R 23844560 23844573 roo 5 9149 3.5 1.0 2.2 1.6 9163 chr3R 23835410 intron CG34355 + chr3R 23839992 intron CG34355 + chr3R 23844573 intron CG34355 + chr3R_5_23835001 chr3R_23835001 RAL-799 1340 chr3R 23865029 23865056 chr3R 23865118 23865145 12 89 2.0 1.5 1.8 4.3 116 chr3R 23865029 intron Pli - chr3R 23865087 intron Pli - chr3R 23865145 intron Pli - chr3R_12_23865001 chr3R_23865001 RAL-799 1341 chr3R 23888088 23888108 chr3R 23888174 23888194 6 86 2.0 2.0 2.0 2.0 106 chr3R 23888088 intron Pli - chr3R 23888141 intron Pli - chr3R 23888194 intron Pli - chr3R_6_23885001 chr3R_23885001 RAL-799 1342 chr3R 23944911 23944934 chr3R 23944996 23945019 7 85 1.0 3.0 2.0 2.3 108 chr3R 23944911 intron CG12268 - chr3R 23944965 intron CG12268 - chr3R 23945019 exon CG12268 - chr3R_7_23940001 chr3R_23940001 RAL-799 1343 chr3R 24021641 24021648 chr3R 24021731 24021738 4 90 3.5 2.5 3.0 1.0 97 chr3R 24021641 intron KrT95D - chr3R 24021690 intron KrT95D - chr3R 24021738 intron KrT95D - chr3R_4_24020001 chr3R_24020001 RAL-799 1344 chr3R 24072087 24072114 chr3R 24072522 24072544 jockey 15 437 5.5 2.5 4.0 3.0 457 chr3R 24072087 intron 4EHP - chr3R 24072316 intron 4EHP - chr3R 24072544 intron 4EHP - chr3R_15_24070001 chr3R_24070001 RAL-799 1345 chr3R 24076937 24076947 chr3R 24078404 24078414 hobo 6 1466 3.0 7.0 5.0 1.0 1477 chr3R 24076937 intron 4EHP - chr3R 24077676 intron 4EHP - chr3R 24078414 intron 4EHP - chr3R_6_24075001 chr3R_24075001 RAL-799 1346 chr3R 24207220 24207235 chr3R 24212296 24212310 flea 7 5075 3.0 7.5 5.2 1.1 5090 chr3R 24207220 intron twin - chr3R 24209765 intron twin - chr3R 24212310 intron twin - chr3R_7_24205001 chr3R_24205001 RAL-799 1347 chr3R 24327554 24327589 chr3R 24329006 24329039 18 1451 51.5 35.0 43.2 0.4 1485 chr3R 24327554 exon BRWD3 + chr3R 24328296 3` UTR BRWD3 + chr3R 24329039 exon CG5728 - chr3R_18_24325001 chr3R_24325001 RAL-799 1348 chr3R 24433491 24433504 chr3R 24433570 24433583 8 79 1.5 3.5 2.5 2.3 92 chr3R 24433491 intron nAChRalpha1 - chr3R 24433537 intron nAChRalpha1 - chr3R 24433583 intron nAChRalpha1 - chr3R_8_24430001 chr3R_24430001 RAL-799 1349 chr3R 24441622 24441650 chr3R 24441904 24441930 8 280 2.0 1.0 1.5 3.2 308 chr3R 24441622 intron nAChRalpha1 - chr3R 24441776 intron nAChRalpha1 - chr3R 24441930 intron nAChRalpha1 - chr3R_8_24440001 chr3R_24440001 RAL-799 1350 chr3R 24493275 24493305 chr3R 24493504 24493533 BS 6 229 3.0 3.0 3.0 1.5 258 chr3R 24493275 intergenic not near genes chr3R 24493404 intergenic not near genes chr3R 24493533 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-799 1351 chr3R 24670171 24670198 chr3R 24670255 24670282 5 84 1.5 1.0 1.2 2.3 111 chr3R 24670171 intron slo + chr3R 24670226 intron slo + chr3R 24670282 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-799 1352 chr3R 24671218 24671240 chr3R 24671295 24671317 4 77 2.0 2.5 2.2 1.2 99 chr3R 24671218 intron slo + chr3R 24671268 intron slo + chr3R 24671317 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-799 1353 chr3R 24730098 24730118 chr3R 24732476 24732496 Doc 6 2378 2.5 1.0 1.8 2.1 2398 chr3R 24730098 intron tok + chr3R 24731297 intron tok + chr3R 24732496 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-799 1354 chr3R 24890674 24890680 chr3R 24890773 24890775 4 98 2.5 2.5 2.5 1.1 101 chr3R 24890674 intron CG31121 - chr3R 24890724 intron CG31121 - chr3R 24890775 intron CG31121 - chr3R_4_24890001 chr3R_24890001 RAL-799 1355 chr3R 24912482 24912513 chr3R 24912564 24912595 4 82 0.5 2.0 1.2 1.8 113 chr3R 24912482 intergenic not near genes chr3R 24912538 intergenic CR44267 + chr3R 24912595 intergenic CR44267 + chr3R_4_24910001 chr3R_24910001 RAL-799 1356 chr3R 24969474 24969499 chr3R 24969588 24969613 8 114 0.5 2.0 1.2 3.6 139 chr3R 24969474 intergenic not near genes chr3R 24969544 intergenic not near genes chr3R 24969613 intergenic not near genes chr3R_8_24965001 chr3R_24965001 RAL-799 1357 chr3R 24974912 24974929 chr3R 24974991 24975007 5 79 6.0 2.5 4.2 1.0 95 chr3R 24974912 intergenic not near genes chr3R 24974960 intergenic not near genes chr3R 24975007 intergenic not near genes chr3R_5_24970001 chr3R_24970001 RAL-799 1358 chr3R 24977664 24977686 chr3R 24977829 24977851 5 165 3.0 1.5 2.2 1.6 187 chr3R 24977664 intergenic not near genes chr3R 24977758 intergenic not near genes chr3R 24977851 intergenic not near genes chr3R_5_24975001 chr3R_24975001 RAL-799 1359 chr3R 25027541 25027570 chr3R 25027754 25027783 5 213 3.0 5.5 4.2 1.0 242 chr3R 25027541 intron Hr96 + chr3R 25027662 intron Hr96 + chr3R 25027783 intron Hr96 + chr3R_5_25025001 chr3R_25025001 RAL-799 1360 chr3R 25136398 25136428 chr3R 25136478 25136508 5 80 0.5 1.0 0.8 2.8 110 chr3R 25136398 3` UTR Bili + chr3R 25136453 3` UTR Bili + chr3R 25136508 3` UTR Bili + chr3R_5_25135001 chr3R_25135001 RAL-799 1361 chr3R 25300683 25300703 chr3R 25300799 25300819 6 116 1.0 4.0 2.5 1.7 136 chr3R 25300683 intergenic CG13659 + chr3R 25300751 intergenic CG13659 + chr3R 25300819 intergenic CG13659 + chr3R_6_25300001 chr3R_25300001 RAL-799 1362 chr3R 25368475 25368504 chr3R 25368593 25368622 10 118 1.0 0.0 0.5 6.7 147 chr3R 25368475 intron Fur1 - chr3R 25368548 intron Fur1 - chr3R 25368622 intron Fur1 - chr3R_10_25365001 chr3R_25365001 RAL-799 1363 chr3R 25514443 25514450 chr3R 25514524 25514531 7 81 0.0 2.0 1.0 3.5 88 chr3R 25514443 intergenic not near genes chr3R 25514487 intergenic not near genes chr3R 25514531 intergenic not near genes chr3R_7_25510001 chr3R_25510001 RAL-799 1364 chr3R 25529629 25529639 chr3R 25529906 25529914 8 277 0.0 5.0 2.5 2.3 285 chr3R 25529629 intron msi + chr3R 25529772 intron msi + chr3R 25529914 intron msi + chr3R_8_25525001 chr3R_25525001 RAL-799 1365 chr3R 25621064 25621076 chr3R 25621140 25621152 6 76 0.5 2.0 1.2 2.7 88 chr3R 25621064 intron Npl4 - chr3R 25621108 intron Npl4 - chr3R 25621152 intron Npl4 - chr3R_6_25620001 chr3R_25620001 RAL-799 1366 chr3R 25621780 25621808 chr3R 25621863 25621892 5 83 4.5 3.0 3.8 1.0 112 chr3R 25621780 intron Npl4 - chr3R 25621836 intron Npl4 - chr3R 25621892 exon Npl4 - chr3R_5_25620001 chr3R_25620001 RAL-799 1367 chr3R 25725831 25725861 chr3R 25734991 25735021 roo 4 9160 1.5 1.0 1.2 1.8 9190 chr3R 25725831 intron LpR2 - chr3R 25730426 intron LpR2 - chr3R 25735021 intron LpR2 - chr3R_4_25730001 chr3R_25730001 RAL-799 1368 chr3R 25755743 25755774 chr3R 25755831 25755862 12 88 2.5 4.5 3.5 2.7 119 chr3R 25755743 intron LpR1 - chr3R 25755802 intron LpR1 - chr3R 25755862 intron LpR1 - chr3R_12_25755001 chr3R_25755001 RAL-799 1369 chr3R 25832693 25832723 chr3R 25841875 25841905 roo 5 9182 1.5 3.0 2.2 1.6 9212 chr3R 25832693 exon alpha4GT2 + chr3R 25837299 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_5_25835001 chr3R_25835001 RAL-799 1370 chr3R 25843643 25843666 chr3R 25843773 25843796 6 130 3.5 4.5 4.0 1.2 153 chr3R 25843643 intergenic CR45653 + chr3R 25843720 intergenic CR45653 + chr3R 25843796 intergenic CR45653 + chr3R_6_25840001 chr3R_25840001 RAL-799 1371 chr3R 25908676 25908704 chr3R 25908758 25908786 6 82 2.0 1.5 1.8 2.1 110 chr3R 25908676 intron CG42235 + chr3R 25908731 intron CG42235 + chr3R 25908786 intron CG42235 + chr3R_6_25905001 chr3R_25905001 RAL-799 1372 chr3R 25927513 25927539 chr3R 25927594 25927621 4 82 1.5 0.0 0.8 2.2 108 chr3R 25927513 intron CCAP-R - chr3R 25927567 intron CCAP-R - chr3R 25927621 intron CCAP-R - chr3R_4_25925001 chr3R_25925001 RAL-799 1373 chr3R 26158374 26158388 chr3R 26158566 26158580 5 192 0.0 3.0 1.5 2.0 206 chr3R 26158374 intergenic not near genes chr3R 26158477 intergenic not near genes chr3R 26158580 intergenic not near genes chr3R_5_26155001 chr3R_26155001 RAL-799 1374 chr3R 26214341 26214356 chr3R 26214422 26214437 7 81 4.0 4.5 4.2 1.3 96 chr3R 26214341 intergenic not near genes chr3R 26214389 intergenic not near genes chr3R 26214437 intergenic not near genes chr3R_7_26210001 chr3R_26210001 RAL-799 1375 chr3R 26235490 26235522 chr3R 26235572 26235604 7 76 1.0 5.0 3.0 1.8 114 chr3R 26235490 5` UTR CR42745 + chr3R 26235547 5` UTR CR42745 + chr3R 26235604 5` UTR CR42745 + chr3R_7_26235001 chr3R_26235001 RAL-799 1376 chr3R 26241246 26241276 chr3R 26241337 26241367 4 91 1.5 2.5 2.0 1.3 121 chr3R 26241246 intron CR42745 + chr3R 26241306 intron CR42745 + chr3R 26241367 intron CR42745 + chr3R_4_26240001 chr3R_26240001 RAL-799 1377 chr3R 17227312 17227315 chr3R 26242105 26242107 5 9014792 26.0 12.5 19.2 0.2 9014795 chr3R 17227312 intergenic not near genes chr3R 21734710 intergenic not near genes chr3R 26242107 intron CR42745 + chr3R_5_21730001 chr3R_21730001 RAL-799 1378 chr3R 26252670 26252699 chr3R 26253044 26253073 11 374 5.5 6.0 5.8 1.6 403 chr3R 26252670 5` UTR CR42745 + chr3R 26252872 5` UTR CR42745 + chr3R 26253073 intergenic CR42745 + chr3R_11_26250001 chr3R_26250001 RAL-799 1379 chr3R 26376325 26376354 chr3R 26385484 26385514 roo 13 9160 2.0 0.5 1.2 5.9 9189 chr3R 26376325 intergenic not near genes chr3R 26380920 intergenic not near genes chr3R 26385514 intergenic not near genes chr3R_13_26380001 chr3R_26380001 RAL-799 1380 chr3R 26387319 26387348 chr3R 26387396 26387425 11 77 3.0 2.0 2.5 3.1 106 chr3R 26387319 intergenic not near genes chr3R 26387372 intergenic not near genes chr3R 26387425 intergenic not near genes chr3R_11_26385001 chr3R_26385001 RAL-799 1381 chr3R 26458212 26458222 chr3R 26458297 26458306 4 85 7.0 1.0 4.0 0.8 94 chr3R 26458212 intergenic CG14238 + chr3R 26458259 5` UTR CG14238 + chr3R 26458306 5` UTR CG14238 + chr3R_4_26455001 chr3R_26455001 RAL-799 1382 chr3R 26541015 26541023 chr3R 26541094 26541102 5 79 0.0 2.0 1.0 2.5 87 chr3R 26541015 intron scrib + chr3R 26541058 intron scrib + chr3R 26541102 intron scrib + chr3R_5_26540001 chr3R_26540001 RAL-799 1383 chr3R 26558349 26558361 chr3R 26565661 26565671 Stalker4 4 7311 2.5 5.5 4.0 0.8 7322 chr3R 26558349 intron scrib + chr3R 26562010 intron scrib + chr3R 26565671 intron scrib + chr3R_4_26560001 chr3R_26560001 RAL-799 1384 chr3R 26612953 26612964 chr3R 26613034 26613045 5 81 2.5 3.0 2.8 1.3 92 chr3R 26612953 intergenic not near genes chr3R 26612999 intergenic not near genes chr3R 26613045 intergenic not near genes chr3R_5_26610001 chr3R_26610001 RAL-799 1385 chr3R 26660648 26660676 chr3R 26660731 26660760 13 84 3.5 4.5 4.0 2.6 112 chr3R 26660648 intron beat-VII - chr3R 26660704 intron beat-VII - chr3R 26660760 intron beat-VII - chr3R_13_26660001 chr3R_26660001 RAL-799 1386 chr3R 26770242 26770272 chr3R 26770319 26770349 10 77 0.5 0.0 0.2 8.3 107 chr3R 26770242 intergenic CR45563 + chr3R 26770296 intergenic CR45563 + chr3R 26770349 intergenic not near genes chr3R_10_26770001 chr3R_26770001 RAL-799 1387 chr3R 26810554 26810580 chr3R 26811038 26811065 roo 8 485 2.0 4.0 3.0 2.0 511 chr3R 26810554 intron Tl + chr3R 26810810 intron Tl + chr3R 26811065 intron Tl + chr3R_8_26810001 chr3R_26810001 RAL-799 1388 chr3R 27007413 27007428 chr3R 27016546 27016563 roo 4 9134 2.5 1.0 1.8 1.4 9150 chr3R 27007413 intron RYa-R + chr3R 27011988 intron RYa-R + chr3R 27016563 intron RYa-R + chr3R_4_27010001 chr3R_27010001 RAL-799 1389 chr3R 27140513 27140541 chr3R 27148123 27148131 412 5 7604 4.5 1.0 2.8 1.3 7618 chr3R 27140513 intron CG6051 - chr3R 27144322 intron CG6051 - chr3R 27148131 intron CG6051 - chr3R_5_27140001 chr3R_27140001 RAL-799 1390 chr3R 27195577 27195612 chr3R 27195663 27195668 16 83 3.0 3.0 3.0 4.0 91 chr3R 27195577 intergenic not near genes chr3R 27195622 intergenic not near genes chr3R 27195668 intergenic not near genes chr3R_16_27195001 chr3R_27195001 RAL-799 1391 chr3R 27301273 27301286 chr3R 27301360 27301373 4 87 5.0 0.5 2.8 1.1 100 chr3R 27301273 intron CG3339 - chr3R 27301323 intron CG3339 - chr3R 27301373 intron CG3339 - chr3R_4_27300001 chr3R_27300001 RAL-799 1392 chr3R 27339134 27339159 chr3R 27339250 27339279 7 121 0.0 0.5 0.2 5.8 145 chr3R 27339134 intergenic not near genes chr3R 27339206 intergenic not near genes chr3R 27339279 intergenic not near genes chr3R_7_27335001 chr3R_27335001 RAL-799 1393 chr3R 27342798 27342824 chr3R 27351379 27351405 Tirant 7 8581 0.5 1.0 0.8 3.9 8607 chr3R 27342798 intron CG42534 + chr3R 27347102 intron CG42534 + chr3R 27351405 intron CG42534 + chr3R_7_27345001 chr3R_27345001 RAL-799 1394 chr3R 27377395 27377498 chr3R 27377480 27377585 14 85 0.5 0.5 0.5 9.3 190 chr3R 27377395 3` UTR side - chr3R 27377490 3` UTR side - chr3R 27377585 3` UTR side - chr3R_14_27375001 chr3R_27375001 RAL-799 1395 chr3R 27475453 27475482 chr3R 27475538 27475567 13 85 3.5 4.0 3.8 2.7 114 chr3R 27475453 intergenic not near genes chr3R 27475510 intergenic not near genes chr3R 27475567 intergenic not near genes chr3R_13_27475001 chr3R_27475001 RAL-799 1396 chr3R 27492379 27492408 chr3R 27492466 27492494 7 87 2.5 0.5 1.5 2.8 115 chr3R 27492379 intergenic not near genes chr3R 27492436 intergenic not near genes chr3R 27492494 intergenic not near genes chr3R_7_27490001 chr3R_27490001 RAL-799 1397 chr3R 27511246 27511283 chr3R 27511333 27511370 10 87 3.5 1.5 2.5 2.9 124 chr3R 27511246 intergenic not near genes chr3R 27511308 intergenic not near genes chr3R 27511370 intergenic not near genes chr3R_10_27510001 chr3R_27510001 RAL-799 1398 chr3R 27521159 27521181 chr3R 27530368 27530390 roo 4 9209 1.5 0.5 1.0 2.0 9231 chr3R 27521159 intron CG12885 + chr3R 27525774 intron CG12885 + chr3R 27530390 intron CG12885 + chr3R_4_27525001 chr3R_27525001 RAL-799 1399 chr3R 27595055 27595086 chr3R 27595138 27595167 8 80 1.5 2.0 1.8 2.9 112 chr3R 27595055 intron CG5639 - chr3R 27595111 intron CG5639 - chr3R 27595167 intron CG5639 - chr3R_8_27595001 chr3R_27595001 RAL-799 1400 chr3R 27644255 27644284 chr3R 27644346 27644376 8 92 2.0 2.5 2.2 2.5 121 chr3R 27644255 intron tau - chr3R 27644316 intron tau - chr3R 27644376 intron tau - chr3R_8_27640001 chr3R_27640001 RAL-799 1401 chr3R 27705359 27705387 chr3R 27705438 27705467 10 78 3.0 2.0 2.5 2.9 108 chr3R 27705359 exon CG12428 - chr3R 27705413 intron CG12428 - chr3R 27705467 exon CG12428 - chr3R_10_27705001 chr3R_27705001 RAL-799 1402 chr3R 27779272 27779284 chr3R 27779352 27779362 4 80 7.0 7.5 7.2 0.5 90 chr3R 27779272 exon CG34353 - chr3R 27779317 intron CG34353 - chr3R 27779362 intron CG34353 - chr3R_4_27775001 chr3R_27775001 RAL-799 1403 chr3R 27799936 27799959 chr3R 27800018 27800041 8 82 3.0 2.5 2.8 2.1 105 chr3R 27799936 intron CG34353 - chr3R 27799988 intron CG34353 - chr3R 27800041 intron CG34353 - chr3R_8_27795001 chr3R_27795001 RAL-799 1404 chr3R 27862957 27862987 chr3R 27868261 27868292 Transpac 8 5305 1.0 2.5 1.8 2.9 5335 chr3R 27862957 intron CG34353 - chr3R 27865624 intron CG34353 - chr3R 27868292 intron CG34353 - chr3R_8_27865001 chr3R_27865001 RAL-799 1405 chr3R 27875706 27875733 chr3R 27882761 27882788 297 10 7055 2.0 4.5 3.2 2.4 7082 chr3R 27875706 intron CG34353 - chr3R 27879247 intron CG34353 - chr3R 27882788 intron CG34353 - chr3R_10_27875001 chr3R_27875001 RAL-799 1406 chr3R 27997931 27997959 chr3R 27998013 27998042 9 82 3.5 1.0 2.2 2.8 111 chr3R 27997931 intergenic not near genes chr3R 27997986 intergenic not near genes chr3R 27998042 intergenic not near genes chr3R_9_27995001 chr3R_27995001 RAL-799 1407 chr3R 28068492 28068519 chr3R 28073934 28073961 I-element 6 5440 2.5 2.0 2.2 1.9 5469 chr3R 28068492 intron CG34362 + chr3R 28071226 intron CG34362 + chr3R 28073961 intron CG34362 + chr3R_6_28070001 chr3R_28070001 RAL-799 1408 chr3R 28156015 28156048 chr3R 28156353 28156386 7 336 1.0 1.5 1.2 3.2 371 chr3R 28156015 intron CG34354 + chr3R 28156200 intron CG34354 + chr3R 28156386 intron CG34354 + chr3R_7_28155001 chr3R_28155001 RAL-799 1409 chr3R 28173672 28173703 chr3R 28181102 28181133 mdg1 4 7430 1.5 1.5 1.5 1.6 7461 chr3R 28173672 intron CG34354 + chr3R 28177402 intron CG34354 + chr3R 28181133 intron CG34354 + chr3R_4_28175001 chr3R_28175001 RAL-799 1410 chr3R 28219226 28219237 chr3R 28219313 28219326 5 88 4.0 4.0 4.0 1.0 100 chr3R 28219226 intron CG34354 + chr3R 28219276 intron CG34354 + chr3R 28219326 intron CG34354 + chr3R_5_28215001 chr3R_28215001 RAL-799 1411 chr3R 28227637 28227660 chr3R 28227746 28227769 4 109 2.0 1.5 1.8 1.4 132 chr3R 28227637 intron CG34354 + chr3R 28227703 intron CG34354 + chr3R 28227769 intron CG34354 + chr3R_4_28225001 chr3R_28225001 RAL-799 1412 chr3R 28253340 28253359 chr3R 28255850 28255869 jockey 9 2509 1.0 3.0 2.0 3.0 2529 chr3R 28253340 intergenic not near genes chr3R 28254604 intergenic not near genes chr3R 28255869 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-799 1413 chr3R 28302107 28302132 chr3R 28302546 28302570 jockey 5 439 1.5 3.0 2.2 1.6 463 chr3R 28302107 intergenic not near genes chr3R 28302338 intergenic not near genes chr3R 28302570 intergenic not near genes chr3R_5_28300001 chr3R_28300001 RAL-799 1414 chr3R 28304638 28304659 chr3R 28304725 28304746 4 87 0.5 3.5 2.0 1.3 108 chr3R 28304638 intergenic CG12516 - chr3R 28304692 intergenic CG12516 - chr3R 28304746 intergenic CG12516 - chr3R_4_28300001 chr3R_28300001 RAL-799 1415 chr3R 28337697 28337724 chr3R 28337782 28337811 6 87 3.0 4.0 3.5 1.3 114 chr3R 28337697 intron Gfat2 - chr3R 28337754 intron Gfat2 - chr3R 28337811 intron Gfat2 - chr3R_6_28335001 chr3R_28335001 RAL-799 1416 chr3R 28352512 28352539 chr3R 28352851 28352879 16 339 3.0 5.5 4.2 3.1 367 chr3R 28352512 exon Or98b + chr3R 28352696 exon Or98b + chr3R 28352879 exon Or98b + chr3R_16_28350001 chr3R_28350001 RAL-799 1417 chr3R 28393698 28393723 chr3R 28393798 28393823 4 100 2.0 2.0 2.0 1.3 125 chr3R 28393698 intergenic not near genes chr3R 28393760 intergenic not near genes chr3R 28393823 intergenic not near genes chr3R_4_28390001 chr3R_28390001 RAL-799 1418 chr3R 28411121 28411140 chr3R 28411197 28411216 4 76 1.0 3.0 2.0 1.3 95 chr3R 28411121 intergenic not near genes chr3R 28411168 intergenic not near genes chr3R 28411216 intergenic not near genes chr3R_4_28410001 chr3R_28410001 RAL-799 1419 chr3R 28425186 28425218 chr3R 28425265 28425296 10 78 1.5 3.5 2.5 2.9 110 chr3R 28425186 intron beat-VI + chr3R 28425241 intron beat-VI + chr3R 28425296 intron beat-VI + chr3R_10_28425001 chr3R_28425001 RAL-799 1420 chr3R 28478491 28478519 chr3R 28478567 28478595 10 75 1.0 4.0 2.5 2.9 104 chr3R 28478491 intergenic not near genes chr3R 28478543 intergenic not near genes chr3R 28478595 intergenic not near genes chr3R_10_28475001 chr3R_28475001 RAL-799 1421 chr3R 28599382 28599402 chr3R 28599529 28599549 6 147 1.0 2.0 1.5 2.4 167 chr3R 28599382 intergenic Noa36 - chr3R 28599466 intergenic Noa36 - chr3R 28599549 intergenic Noa36 - chr3R_6_28595001 chr3R_28595001 RAL-799 1422 chr3R 28626195 28626227 chr3R 28626295 28626327 8 100 1.0 1.5 1.2 3.6 132 chr3R 28626195 intron CG10011 - chr3R 28626261 intron CG10011 - chr3R 28626327 intron CG10011 - chr3R_8_28625001 chr3R_28625001 RAL-799 1423 chr3R 28711739 28711765 chr3R 28711828 28711854 4 89 2.0 1.5 1.8 1.4 115 chr3R 28711739 intron htt + chr3R 28711796 intron htt + chr3R 28711854 intron htt + chr3R_4_28710001 chr3R_28710001 RAL-799 1424 chr3R 28792871 28792902 chr3R 28797966 28797997 jockey 9 5094 0.0 2.5 1.2 4.1 5126 chr3R 28792871 intergenic not near genes chr3R 28795434 intergenic not near genes chr3R 28797997 intergenic not near genes chr3R_9_28795001 chr3R_28795001 RAL-799 1425 chr3R 21907534 21907536 chr3R 28831798 28831802 123 6924266 19.0 19.0 19.0 6.2 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_123_25365001 chr3R_25365001 RAL-799 1426 chr3R 28989911 28989934 chr3R 28990081 28990107 4 173 1.5 1.0 1.2 1.8 196 chr3R 28989911 intergenic not near genes chr3R 28990009 intergenic not near genes chr3R 28990107 intergenic not near genes chr3R_4_28990001 chr3R_28990001 RAL-799 1427 chr3R 21907534 21907535 chr3R 29013340 29013340 5 7105806 19.0 13.5 16.2 0.3 7105806 chr3R 21907534 intergenic CG6678 + chr3R 25460437 intron Fur1 - chr3R 29013340 intron wat - chr3R_5_25460001 chr3R_25460001 RAL-799 1428 chr3R 29032743 29032778 chr3R 29032820 29032855 13 75 4.0 0.5 2.2 4.1 112 chr3R 29032743 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032799 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R 29032855 5` UTR,3` UTR CR45044 +,beta4GalNAcTB - chr3R_13_29030001 chr3R_29030001 RAL-799 1429 chr3R 29053737 29053769 chr3R 29054245 29054279 10 509 1.5 1.0 1.2 4.5 542 chr3R 29053737 exon CG11842 + chr3R 29054008 intergenic CG11842 +,CG11843 + chr3R 29054279 intergenic CG11843 +,CG11842 + chr3R_10_29050001 chr3R_29050001 RAL-799 1430 chr3R 29079377 29079412 chr3R 29080749 29080784 NOF 6 1372 1.0 1.5 1.2 2.7 1407 chr3R 29079377 intron CG11873 + chr3R 29080080 intron CG11873 + chr3R 29080784 intron CG11873 + chr3R_6_29080001 chr3R_29080001 RAL-799 1431 chr3R 29140046 29140076 chr3R 29140266 29140298 11 222 2.0 1.5 1.8 3.9 252 chr3R 29140046 intron CG14516 + chr3R 29140172 intron CG14516 + chr3R 29140298 intron CG14516 + chr3R_11_29140001 chr3R_29140001 RAL-799 1432 chr3R 29177784 29177791 chr3R 29177862 29177869 4 78 4.5 2.0 3.2 1.0 85 chr3R 29177784 intron CG14509 - chr3R 29177826 intron CG14509 - chr3R 29177869 intron CG14509 - chr3R_4_29175001 chr3R_29175001 RAL-799 1433 chr3R 29282806 29282820 chr3R 29282894 29282908 6 88 2.5 6.5 4.5 1.1 102 chr3R 29282806 intergenic not near genes chr3R 29282857 intergenic not near genes chr3R 29282908 intergenic not near genes chr3R_6_29280001 chr3R_29280001 RAL-799 1434 chr3R 29319846 29319859 chr3R 29320165 29320178 jockey 4 319 1.0 7.0 4.0 0.8 332 chr3R 29319846 intergenic Cnx99A - chr3R 29320012 intergenic Cnx99A - chr3R 29320178 intergenic not near genes chr3R_4_29320001 chr3R_29320001 RAL-799 1435 chr3R 29415610 29415642 chr3R 29415773 29415805 15 164 33.0 23.0 28.0 0.5 195 chr3R 29415610 intron Ptp99A + chr3R 29415708 intron Ptp99A + chr3R 29415805 intron Ptp99A + chr3R_15_29415001 chr3R_29415001 RAL-799 1436 chr3R 29446993 29447022 chr3R 29447080 29447107 8 87 2.5 0.0 1.2 3.6 114 chr3R 29446993 intron Ptp99A + chr3R 29447050 intron Ptp99A + chr3R 29447107 intron Ptp99A + chr3R_8_29445001 chr3R_29445001 RAL-799 1437 chr3R 29449374 29449391 chr3R 29449452 29449469 5 78 0.5 5.0 2.8 1.3 95 chr3R 29449374 intron Ptp99A + chr3R 29449422 intron Ptp99A + chr3R 29449469 intron Ptp99A + chr3R_5_29445001 chr3R_29445001 RAL-799 1438 chr3R 29472012 29472040 chr3R 29472105 29472131 5 91 1.0 3.5 2.2 1.6 119 chr3R 29472012 intron Ptp99A + chr3R 29472072 intron Ptp99A + chr3R 29472131 intron Ptp99A + chr3R_5_29470001 chr3R_29470001 RAL-799 1439 chr3R 29526233 29526263 chr3R 29526320 29526350 5 87 1.0 1.5 1.2 2.3 117 chr3R 29526233 intergenic not near genes chr3R 29526292 intergenic not near genes chr3R 29526350 intergenic not near genes chr3R_5_29525001 chr3R_29525001 RAL-799 1440 chr3R 29539435 29539451 chr3R 29539511 29539527 4 74 2.5 0.0 1.2 1.8 92 chr3R 29539435 intergenic not near genes chr3R 29539481 intergenic not near genes chr3R 29539527 intergenic not near genes chr3R_4_29535001 chr3R_29535001 RAL-799 1441 chr3R 29590379 29590392 chr3R 29590470 29590485 6 93 5.5 3.5 4.5 1.1 106 chr3R 29590379 intron CG31041 - chr3R 29590432 intron CG31041 - chr3R 29590485 intron CG31041 - chr3R_6_29590001 chr3R_29590001 RAL-799 1442 chr3R 29609164 29609184 chr3R 29609253 29609272 5 89 4.0 1.0 2.5 1.4 108 chr3R 29609164 intron alph + chr3R 29609218 intron alph + chr3R 29609272 intron alph + chr3R_5_29605001 chr3R_29605001 RAL-799 1443 chr3R 29738267 29738296 chr3R 29739734 29739763 hobo 7 1467 2.5 2.0 2.2 2.2 1496 chr3R 29738267 intergenic CG1969 +,CG7598 + chr3R 29739015 intron CG1969 + chr3R 29739763 5` UTR CG1969 + chr3R_7_29735001 chr3R_29735001 RAL-799 1444 chr3R 29760360 29760393 chr3R 29761561 29761594 pogo 4 1200 1.0 0.5 0.8 2.2 1234 chr3R 29760360 intergenic not near genes chr3R 29760977 intergenic not near genes chr3R 29761594 intergenic not near genes chr3R_4_29760001 chr3R_29760001 RAL-799 1445 chr3R 29831812 29831842 chr3R 29831897 29831927 11 85 4.0 4.5 4.2 2.1 115 chr3R 29831812 exon Atg16 - chr3R 29831870 intron Atg16 - chr3R 29831927 exon Atg16 - chr3R_11_29830001 chr3R_29830001 RAL-799 1446 chr3R 29882017 29882048 chr3R 29891174 29891205 roo 14 9157 2.0 5.5 3.8 2.9 9188 chr3R 29882017 intron CG31038 + chr3R 29886611 intron CG31038 + chr3R 29891205 intron CG31038 + chr3R_14_29885001 chr3R_29885001 RAL-799 1447 chr3R 30082991 30083023 chr3R 30083067 30083099 8 76 1.0 2.0 1.5 3.2 108 chr3R 30082991 intron sima + chr3R 30083045 intron sima + chr3R 30083099 intron sima + chr3R_8_30080001 chr3R_30080001 RAL-799 1448 chr3R 30084850 30084879 chr3R 30086317 30086346 hobo 15 1466 2.5 2.5 2.5 4.3 1496 chr3R 30084850 intron sima + chr3R 30085598 intron sima + chr3R 30086346 intron sima + chr3R_15_30085001 chr3R_30085001 RAL-799 1449 chr3R 30143825 30143844 chr3R 30143913 30143932 6 88 2.0 0.0 1.0 3.0 107 chr3R 30143825 intron AdoR - chr3R 30143878 intron AdoR - chr3R 30143932 intron AdoR - chr3R_6_30140001 chr3R_30140001 RAL-799 1450 chr3R 30268250 30268448 chr3R 30268329 30268500 12 78 1.5 2.0 1.8 4.3 250 chr3R 30268250 intergenic not near genes chr3R 30268375 intergenic not near genes chr3R 30268500 intergenic not near genes chr3R_12_30265001 chr3R_30265001 RAL-799 1451 chr3R 30328993 30329008 chr3R 30329282 30329290 4 286 2.5 2.0 2.2 1.2 297 chr3R 30328993 intron hdc + chr3R 30329142 intron hdc + chr3R 30329290 intron hdc + chr3R_4_30325001 chr3R_30325001 RAL-799 1452 chr3R 30396216 30396240 chr3R 30404482 30404506 roo 6 8266 2.0 3.5 2.8 1.6 8290 chr3R 30396216 intergenic not near genes chr3R 30400361 intergenic not near genes chr3R 30404506 5` UTR CR45570 + chr3R_6_30400001 chr3R_30400001 RAL-799 1453 chr3R 30456389 30456423 chr3R 30456469 30456503 9 80 0.5 2.0 1.2 4.1 114 chr3R 30456389 intergenic CG2224 - chr3R 30456446 3` UTR CG2224 - chr3R 30456503 3` UTR CG2224 - chr3R_9_30455001 chr3R_30455001 RAL-799 1454 chr3R 30458022 30458047 chr3R 30458102 30458127 9 80 0.0 3.0 1.5 3.6 105 chr3R 30458022 intron CG2224 - chr3R 30458074 intron CG2224 - chr3R 30458127 intron CG2224 - chr3R_9_30455001 chr3R_30455001 RAL-799 1455 chr3R 30480482 30480511 chr3R 30482950 30482979 jockey 8 2468 1.5 7.5 4.5 1.5 2497 chr3R 30480482 intron PH4alphaEFB + chr3R 30481730 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_8_30480001 chr3R_30480001 RAL-799 1456 chr3R 30544738 30544757 chr3R 30544824 30544849 7 88 1.0 2.5 1.8 2.5 111 chr3R 30544738 intron tmod + chr3R 30544794 intron tmod + chr3R 30544849 intron tmod + chr3R_7_30540001 chr3R_30540001 RAL-799 1457 chr3R 30549009 30549039 chr3R 30549101 30549130 5 88 0.5 3.5 2.0 1.7 121 chr3R 30549009 intron tmod + chr3R 30549070 intron tmod + chr3R 30549130 intron tmod + chr3R_5_30545001 chr3R_30545001 RAL-799 1458 chr3R 30620927 30620948 chr3R 30621082 30621103 7 155 1.5 0.5 1.0 3.5 176 chr3R 30620927 intron CG44954 - chr3R 30621015 intron CG44954 - chr3R 30621103 intron CG44954 - chr3R_7_30620001 chr3R_30620001 RAL-799 1459 chr3R 30627611 30627638 chr3R 30627691 30627716 11 79 4.0 5.0 4.5 2.0 105 chr3R 30627611 exon CG2267 - chr3R 30627664 exon CG2267 - chr3R 30627716 exon CG2267 - chr3R_11_30625001 chr3R_30625001 RAL-799 1460 chr3R 30641699 30641717 chr3R 30641778 30641796 6 78 3.0 3.5 3.2 1.4 97 chr3R 30641699 intergenic not near genes chr3R 30641748 intergenic not near genes chr3R 30641796 intergenic not near genes chr3R_6_30640001 chr3R_30640001 RAL-799 1461 chr3R 30679520 30679552 chr3R 30686989 30687021 blood 11 7469 4.0 2.0 3.0 2.8 7501 chr3R 30679520 intergenic not near genes chr3R 30683270 intergenic not near genes chr3R 30687021 intergenic not near genes chr3R_11_30680001 chr3R_30680001 RAL-799 1462 chr3R 30690167 30690189 chr3R 30690250 30690273 8 84 3.0 3.5 3.2 1.9 106 chr3R 30690167 intergenic Spn100A + chr3R 30690220 intergenic Spn100A + chr3R 30690273 intergenic Spn100A + chr3R_8_30690001 chr3R_30690001 RAL-799 1463 chr3R 30859414 30859426 chr3R 30859491 30859504 4 78 2.0 2.5 2.2 1.2 90 chr3R 30859414 intergenic not near genes chr3R 30859459 intergenic not near genes chr3R 30859504 intergenic not near genes chr3R_4_30855001 chr3R_30855001 RAL-799 1464 chr3R 30896180 30896198 chr3R 30896275 30896294 7 96 1.5 3.0 2.2 2.2 114 chr3R 30896180 intron Cyp4c3 + chr3R 30896237 intron Cyp4c3 + chr3R 30896294 intron Cyp4c3 + chr3R_7_30895001 chr3R_30895001 RAL-799 1465 chr3R 30955779 30955812 chr3R 30955860 30955893 5 81 2.5 0.0 1.2 2.3 114 chr3R 30955779 intergenic not near genes chr3R 30955836 intergenic not near genes chr3R 30955893 intergenic not near genes chr3R_5_30955001 chr3R_30955001 RAL-799 1466 chr3R 30958406 30958432 chr3R 30958486 30958512 5 80 1.0 4.5 2.8 1.3 106 chr3R 30958406 intergenic not near genes chr3R 30958459 intergenic not near genes chr3R 30958512 intergenic not near genes chr3R_5_30955001 chr3R_30955001 RAL-799 1467 chr3R 31042040 31042126 chr3R 31042123 31042213 5 85 0.0 0.0 0.0 5.0 173 chr3R 31042040 exon CanA1 + chr3R 31042126 intron CanA1 + chr3R 31042213 intron CanA1 + chr3R_5_31040001 chr3R_31040001 RAL-799 1468 chr3R 31084907 31084933 chr3R 31084983 31085009 7 76 0.0 0.5 0.2 5.8 102 chr3R 31084907 intergenic not near genes chr3R 31084958 intergenic not near genes chr3R 31085009 intergenic not near genes chr3R_7_31080001 chr3R_31080001 RAL-799 1469 chr3R 31144751 31144766 chr3R 31144841 31144856 7 90 4.5 1.5 3.0 1.8 105 chr3R 31144751 intron Gycbeta100B + chr3R 31144804 intron Gycbeta100B + chr3R 31144856 intron Gycbeta100B + chr3R_7_31140001 chr3R_31140001 RAL-799 1470 chr3R 31150259 31150293 chr3R 31150339 31150373 8 79 2.5 3.0 2.8 2.1 114 chr3R 31150259 intron Gycbeta100B + chr3R 31150316 intron Gycbeta100B + chr3R 31150373 intron Gycbeta100B + chr3R_8_31150001 chr3R_31150001 RAL-799 1471 chr3R 31279381 31279409 chr3R 31285570 31285600 diver 6 6190 5.0 5.0 5.0 1.0 6219 chr3R 31279381 intergenic not near genes chr3R 31282490 intergenic not near genes chr3R 31285600 intergenic not near genes chr3R_6_31280001 chr3R_31280001 RAL-799 1472 chr3R 31412709 31412737 chr3R 31412802 31412830 5 93 4.0 2.5 3.2 1.2 121 chr3R 31412709 intron Gprk2 + chr3R 31412770 intron Gprk2 + chr3R 31412830 intron Gprk2 + chr3R_5_31410001 chr3R_31410001 RAL-799 1473 chr3R 31413089 31413116 chr3R 31418289 31418290 copia 5 5195 3.5 0.0 1.8 1.8 5201 chr3R 31413089 intron Gprk2 + chr3R 31415690 intron Gprk2 + chr3R 31418290 intron Gprk2 + chr3R_5_31415001 chr3R_31415001 RAL-799 1474 chr3R 31426887 31426902 chr3R 31426978 31426994 5 92 2.0 2.5 2.2 1.6 107 chr3R 31426887 intron Gprk2 + chr3R 31426940 intron Gprk2 + chr3R 31426994 intron Gprk2 + chr3R_5_31425001 chr3R_31425001 RAL-799 1475 chr3R 31530819 31530848 chr3R 31531144 31531175 8 325 1.5 2.5 2.0 2.7 356 chr3R 31530819 intergenic not near genes chr3R 31530997 intergenic not near genes chr3R 31531175 intergenic not near genes chr3R_8_31530001 chr3R_31530001 RAL-799 1476 chr3R 31538498 31538522 chr3R 31538576 31538600 8 78 2.5 3.0 2.8 2.1 102 chr3R 31538498 intergenic not near genes chr3R 31538549 intergenic not near genes chr3R 31538600 intergenic not near genes chr3R_8_31535001 chr3R_31535001 RAL-799 1477 chr3R 31599788 31599806 chr3R 31599873 31599891 4 84 2.0 1.5 1.8 1.4 103 chr3R 31599788 intron CycG - chr3R 31599840 intron CycG - chr3R 31599891 intron CycG - chr3R_4_31595001 chr3R_31595001 RAL-799 1478 chr3R 31691533 31691550 chr3R 31696298 31696316 Doc 6 4765 5.0 3.5 4.2 1.2 4783 chr3R 31691533 intergenic not near genes chr3R 31693924 intergenic not near genes chr3R 31696316 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-799 1479 chr3R 31858747 31858772 chr3R 31858831 31858858 5 85 7.0 2.0 4.5 0.9 111 chr3R 31858747 intron heph - chr3R 31858802 intron heph - chr3R 31858858 intron heph - chr3R_5_31855001 chr3R_31855001 RAL-799 1480 chr3R 31961339 31961363 chr3R 31961422 31961445 6 82 4.5 2.0 3.2 1.4 106 chr3R 31961339 intron heph - chr3R 31961392 intron heph - chr3R 31961445 intron heph - chr3R_6_31960001 chr3R_31960001 RAL-799 1481 chr3R 31962080 31962094 chr3R 31962386 31962398 7 305 2.0 0.5 1.2 3.2 318 chr3R 31962080 intron heph - chr3R 31962239 intron heph - chr3R 31962398 intron heph - chr3R_7_31960001 chr3R_31960001 RAL-799 1482 chr4 76492 76513 chr4 81935 81956 I-element 5 5442 3.0 1.5 2.2 1.6 5464 chr4 76492 intron pan + chr4 79224 intron pan + chr4 81956 intron pan + chr4_5_75001 chr4_75001 RAL-799 1483 chr4 97477 97513 chr4 97612 97646 7 134 11.5 10.0 10.8 0.6 169 chr4 97477 intron pan + chr4 97562 intron pan + chr4 97646 intron pan + chr4_7_95001 chr4_95001 RAL-799 1484 chr4 257403 257436 chr4 257572 257606 9 170 2.0 1.5 1.8 3.2 203 chr4 257403 exon RhoGAP102A + chr4 257504 intron RhoGAP102A + chr4 257606 intron RhoGAP102A + chr4_9_255001 chr4_255001 RAL-799 1485 chr4 654369 654400 chr4 654452 654483 8 83 1.0 2.5 1.8 2.9 114 chr4 654369 intron gw - chr4 654426 intron gw - chr4 654483 intron gw - chr4_8_650001 chr4_650001 RAL-799 1486 chr4 671608 671631 chr4 680191 680214 Tirant 8 8583 5.0 6.5 5.8 1.2 8606 chr4 671608 intron CG11360 + chr4 675911 intron CG11360 + chr4 680214 intron CG11360 + chr4_8_675001 chr4_675001 RAL-799 1487 chr4 896787 896815 chr4 896864 896892 5 77 2.0 1.5 1.8 1.8 105 chr4 896787 intron unc-13 - chr4 896840 intron unc-13 - chr4 896892 intron unc-13 - chr4_5_895001 chr4_895001 RAL-799 1488 chr4 905569 905596 chr4 905651 905676 4 82 2.5 3.5 3.0 1.0 107 chr4 905569 5` UTR unc-13 - chr4 905622 5` UTR unc-13 - chr4 905676 5` UTR unc-13 - chr4_4_905001 chr4_905001 RAL-799 1489 chrX 295871 295881 chrX 303490 303501 412 5 7618 1.0 4.5 2.8 1.3 7630 chrX 295871 intron CG3777 + chrX 299686 intron CG3777 + chrX 303501 intron CG3777 + chrX_5_295001 chrX_295001 RAL-799 1490 chrX 318471 318500 chrX 323557 323586 flea 9 5086 1.5 2.5 2.0 3.0 5115 chrX 318471 intron,intron CG3777 +,CG32816 - chrX 321028 intron,intron CG3777 +,CG32816 - chrX 323586 intron,intron CG3777 +,CG32816 - chrX_9_320001 chrX_320001 RAL-799 1491 chrX 325632 325647 chrX 325717 325731 6 85 0.0 2.0 1.0 3.0 99 chrX 325632 intron,intron CG3777 +,CG32816 - chrX 325682 intron,intron CG3777 +,CG32816 - chrX 325731 intron,intron CG3777 +,CG32816 - chrX_6_325001 chrX_325001 RAL-799 1492 chrX 428418 428452 chrX 434603 434637 3S18 8 6185 2.0 1.5 1.8 2.9 6219 chrX 428418 intron CG32816 - chrX 431528 intron CG32816 - chrX 434637 intron CG32816 - chrX_8_430001 chrX_430001 RAL-799 1493 chrX 440995 441017 chrX 441073 441095 7 78 3.0 3.5 3.2 1.7 100 chrX 440995 intron CG32816 - chrX 441045 intron CG32816 - chrX 441095 intron CG32816 - chrX_7_440001 chrX_440001 RAL-799 1494 chrX 450374 450393 chrX 450452 450471 5 78 2.0 2.0 2.0 1.7 97 chrX 450374 intron CG32816 - chrX 450422 intron CG32816 - chrX 450471 intron CG32816 - chrX_5_450001 chrX_450001 RAL-799 1495 chrX 494599 494619 chrX 494691 494711 8 92 3.5 1.0 2.2 2.5 112 chrX 494599 intergenic CG17778 + chrX 494655 5` UTR CG17778 + chrX 494711 5` UTR CG17778 + chrX_8_490001 chrX_490001 RAL-799 1496 chrX 547643 547661 chrX 547887 547905 6 244 1.0 3.0 2.0 2.0 262 chrX 547643 intron Appl + chrX 547774 intron Appl + chrX 547905 intron Appl + chrX_6_545001 chrX_545001 RAL-799 1497 chrX 551421 551451 chrX 558982 559013 412 7 7561 4.0 1.5 2.8 1.8 7592 chrX 551421 intron Appl + chrX 555217 intron Appl + chrX 559013 intron Appl + chrX_7_555001 chrX_555001 RAL-799 1498 chrX 617980 618002 chrX 618060 618078 4 79 1.5 2.0 1.8 1.4 98 chrX 617980 intron CG13366 - chrX 618029 intron CG13366 - chrX 618078 intron CG13366 - chrX_4_615001 chrX_615001 RAL-799 1499 chrX 667653 667671 chrX 667732 667732 7 80 1.0 1.5 1.2 3.2 79 chrX 667653 intergenic not near genes chrX 667692 intergenic not near genes chrX 667732 intergenic not near genes chrX_7_665001 chrX_665001 RAL-799 1500 chrX 670265 670296 chrX 670345 670376 9 79 0.0 1.0 0.5 6.0 111 chrX 670265 intergenic not near genes chrX 670320 intergenic not near genes chrX 670376 intergenic not near genes chrX_9_670001 chrX_670001 RAL-799 1501 chrX 680837 680868 chrX 680920 680951 10 83 2.0 1.5 1.8 3.6 114 chrX 680837 intergenic not near genes chrX 680894 intergenic not near genes chrX 680951 intergenic not near genes chrX_10_680001 chrX_680001 RAL-799 1502 chrX 706803 706828 chrX 707167 707191 8 364 0.0 4.5 2.2 2.5 388 chrX 706803 intron sdk + chrX 706997 intron sdk + chrX 707191 intron sdk + chrX_8_705001 chrX_705001 RAL-799 1503 chrX 718330 718350 chrX 718410 718429 4 80 0.5 2.0 1.2 1.8 99 chrX 718330 intron sdk + chrX 718380 intron sdk + chrX 718429 intron sdk + chrX_4_715001 chrX_715001 RAL-799 1504 chrX 778126 778160 chrX 778216 778250 15 90 5.5 1.0 3.2 3.6 124 chrX 778126 intron fz3 + chrX 778188 intron fz3 + chrX 778250 intron fz3 + chrX_15_775001 chrX_775001 RAL-799 1505 chrX 780595 780603 chrX 780671 780679 5 75 3.5 0.0 1.8 1.8 84 chrX 780595 intron fz3 + chrX 780637 intron fz3 + chrX 780679 intron fz3 + chrX_5_780001 chrX_780001 RAL-799 1506 chrX 806787 806818 chrX 806883 806913 8 95 2.5 4.0 3.2 1.9 126 chrX 806787 intron Sec22 + chrX 806850 intron Sec22 + chrX 806913 intron Sec22 + chrX_8_805001 chrX_805001 RAL-799 1507 chrX 885833 885854 chrX 886045 886066 5 212 3.0 0.0 1.5 2.0 233 chrX 885833 intron CG43867 - chrX 885950 intron CG43867 - chrX 886066 intron CG43867 - chrX_5_885001 chrX_885001 RAL-799 1508 chrX 906709 906729 chrX 908498 908518 S-element 7 1789 4.0 4.0 4.0 1.4 1809 chrX 906709 intron CG43867 - chrX 907614 intron CG43867 - chrX 908518 intron CG43867 - chrX_7_905001 chrX_905001 RAL-799 1509 chrX 912025 912052 chrX 912115 912136 5 82 2.5 3.0 2.8 1.3 111 chrX 912025 intron CG43867 - chrX 912080 intron CG43867 - chrX 912136 intron CG43867 - chrX_5_910001 chrX_910001 RAL-799 1510 chrX 1024453 1024463 chrX 1024534 1024543 4 81 3.0 4.0 3.5 0.9 90 chrX 1024453 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1024498 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX 1024543 intron,intron,intron su(w[a]) +,CG11638 -,CG32814 - chrX_4_1020001 chrX_1020001 RAL-799 1511 chrX 1042508 1042542 chrX 1042584 1042618 9 76 1.0 1.0 1.0 4.5 110 chrX 1042508 5` UTR su(w[a]) + chrX 1042563 5` UTR su(w[a]) + chrX 1042618 5` UTR su(w[a]) + chrX_9_1040001 chrX_1040001 RAL-799 1512 chrX 1357783 1357794 chrX 1367953 1367964 Doc 4 10170 4.0 4.0 4.0 0.8 10181 chrX 1357783 intergenic png - chrX 1362874 intergenic not near genes chrX 1367964 intergenic not near genes chrX_4_1360001 chrX_1360001 RAL-799 1513 chrX 1518052 1518070 chrX 1523454 1523471 jockey 4 5400 2.0 6.0 4.0 0.8 5419 chrX 1518052 intergenic inc + chrX 1520762 intergenic not near genes chrX 1523471 intergenic not near genes chrX_4_1520001 chrX_1520001 RAL-799 1514 chrX 1559922 1559953 chrX 1560006 1560037 11 84 0.5 2.0 1.2 5.0 115 chrX 1559922 intron Mur2B - chrX 1559980 intron Mur2B - chrX 1560037 intron Mur2B - chrX_11_1555001 chrX_1555001 RAL-799 1515 chrX 1954898 1954912 chrX 1962824 1962852 Stalker2 5 7937 3.0 4.0 3.5 1.1 7954 chrX 1954898 intron Hr4 + chrX 1958875 intron Hr4 + chrX 1962852 intron Hr4 + chrX_5_1955001 chrX_1955001 RAL-799 1516 chrX 1982801 1982825 chrX 1982906 1982930 14 105 4.5 5.0 4.8 2.4 129 chrX 1982801 intron Hr4 + chrX 1982866 intron Hr4 + chrX 1982930 intron Hr4 + chrX_14_1980001 chrX_1980001 RAL-799 1517 chrX 2146659 2146686 chrX 2146751 2146779 4 89 1.0 4.5 2.8 1.1 120 chrX 2146659 intron Pgd + chrX 2146719 intron Pgd + chrX 2146779 intron Pgd + chrX_4_2145001 chrX_2145001 RAL-799 1518 chrX 2159854 2159859 chrX 15115130 15115135 4 12955275 25.0 8.0 16.5 0.2 12955281 chrX 2159854 exon Cyp4d1 - chrX 8637494 intron oc - chrX 15115135 exon Cyp4s3 - chrX_4_8635001 chrX_8635001 RAL-799 1519 chrX 2399836 2399858 chrX 2408188 2408188 roo 6 8348 5.5 0.5 3.0 1.5 8352 chrX 2399836 intergenic not near genes chrX 2404012 intergenic not near genes chrX 2408188 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-799 1520 chrX 2555638 2555640 chrX 2555713 2555717 4 76 6.0 8.5 7.2 0.5 79 chrX 2555638 intron Pdfr + chrX 2555678 intron Pdfr + chrX 2555717 intron Pdfr + chrX_4_2555001 chrX_2555001 RAL-799 1521 chrX 2578822 2578845 chrX 2578926 2578949 6 104 1.5 1.0 1.2 2.7 127 chrX 2578822 intergenic Pdfr +,Vha36-3 - chrX 2578886 intergenic Vha36-3 -,Pdfr + chrX 2578949 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-799 1522 chrX 2635373 2635399 chrX 2635482 2635506 7 109 1.5 3.5 2.5 2.0 133 chrX 2635373 intron sgg + chrX 2635440 intron sgg + chrX 2635506 intron sgg + chrX_7_2635001 chrX_2635001 RAL-799 1523 chrX 2664386 2664419 chrX 2665532 2665565 1360 6 1146 2.5 1.5 2.0 2.0 1179 chrX 2664386 intron sgg + chrX 2664976 intron sgg + chrX 2665565 intron sgg + chrX_6_2660001 chrX_2660001 RAL-799 1524 chrX 2759871 2759895 chrX 2759956 2759984 9 89 1.0 3.5 2.2 2.8 113 chrX 2759871 intron kirre + chrX 2759928 intron kirre + chrX 2759984 intron kirre + chrX_9_2755001 chrX_2755001 RAL-799 1525 chrX 2844912 2844929 chrX 2852322 2852339 mdg1 5 7410 1.5 2.0 1.8 1.8 7427 chrX 2844912 intron kirre + chrX 2848626 intron kirre + chrX 2852339 intron kirre + chrX_5_2845001 chrX_2845001 RAL-799 1526 chrX 2864422 2864441 chrX 2864500 2864519 4 77 0.0 3.0 1.5 1.6 97 chrX 2864422 intron kirre + chrX 2864470 intron kirre + chrX 2864519 intron kirre + chrX_4_2860001 chrX_2860001 RAL-799 1527 chrX 2888123 2888140 chrX 2888201 2888218 6 77 3.0 3.0 3.0 1.5 95 chrX 2888123 intron kirre + chrX 2888170 intron kirre + chrX 2888218 intron kirre + chrX_6_2885001 chrX_2885001 RAL-799 1528 chrX 3058029 3058051 chrX 3058270 3058292 pogo 4 241 0.5 1.5 1.0 2.0 263 chrX 3058029 intron kirre + chrX 3058160 intron kirre + chrX 3058292 intron kirre + chrX_4_3055001 chrX_3055001 RAL-799 1529 chrX 3075633 3075658 chrX 3080939 3080964 Transpac 4 5306 2.5 3.0 2.8 1.1 5331 chrX 3075633 intron kirre + chrX 3078298 intron kirre + chrX 3080964 intron kirre + chrX_4_3075001 chrX_3075001 RAL-799 1530 chrX 3415034 3415049 chrX 3421219 3421232 3S18 4 6184 1.0 2.5 1.8 1.4 6198 chrX 3415034 intron,intron CR44999 +,CG12535 - chrX 3418133 intron,intron CR44999 +,CG12535 - chrX 3421232 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-799 1531 chrX 3459989 3460014 chrX 3460066 3460091 7 76 1.0 1.5 1.2 3.2 102 chrX 3459989 intron,intron CR44999 +,CG16782 - chrX 3460040 intron,5` UTR CR44999 +,CG16782 - chrX 3460091 intron,5` UTR CR44999 +,CG16782 - chrX_7_3460001 chrX_3460001 RAL-799 1532 chrX 3597548 3597576 chrX 3619716 3619744 roo 11 22168 2.5 3.5 3.0 2.8 22196 chrX 3597548 intron AstA-R1 + chrX 3608646 intron AstA-R1 + chrX 3619744 intron AstA-R1 + chrX_11_3605001 chrX_3605001 RAL-799 1533 chrX 3620473 3620493 chrX 3620572 3620592 9 99 0.0 2.5 1.2 4.1 119 chrX 3620473 intron AstA-R1 + chrX 3620532 intron AstA-R1 + chrX 3620592 intron AstA-R1 + chrX_9_3620001 chrX_3620001 RAL-799 1534 chrX 3630551 3630573 chrX 3630627 3630649 5 76 1.0 2.0 1.5 2.0 98 chrX 3630551 intron AstA-R1 + chrX 3630600 intron AstA-R1 + chrX 3630649 intron AstA-R1 + chrX_5_3630001 chrX_3630001 RAL-799 1535 chrX 3636201 3636217 chrX 3637134 3637150 5 933 3.0 4.0 3.5 1.1 949 chrX 3636201 intron AstA-R1 + chrX 3636676 intron AstA-R1 + chrX 3637150 intron AstA-R1 + chrX_5_3635001 chrX_3635001 RAL-799 1536 chrX 3713100 3713136 chrX 3713208 3713245 9 108 2.5 0.0 1.2 4.1 145 chrX 3713100 intron Rala - chrX 3713172 intron Rala - chrX 3713245 intron Rala - chrX_9_3710001 chrX_3710001 RAL-799 1537 chrX 3881272 3881291 chrX 3881411 3881430 6 139 3.5 0.5 2.0 2.0 158 chrX 3881272 intron VhaAC39-1 + chrX 3881351 intron VhaAC39-1 + chrX 3881430 intron VhaAC39-1 + chrX_6_3880001 chrX_3880001 RAL-799 1538 chrX 3891153 3891175 chrX 3891271 3891293 5 118 2.5 2.5 2.5 1.4 140 chrX 3891153 intergenic CG42541 - chrX 3891223 intergenic CG42541 - chrX 3891293 intergenic CG42541 - chrX_5_3890001 chrX_3890001 RAL-799 1539 chrX 3986863 3986895 chrX 3994496 3994528 412 11 7633 2.5 3.5 3.0 2.8 7665 chrX 3986863 intergenic not near genes chrX 3990696 intergenic not near genes chrX 3994528 intergenic not near genes chrX_11_3990001 chrX_3990001 RAL-799 1540 chrX 4157895 4157920 chrX 4164930 4164955 297 4 7035 1.0 2.0 1.5 1.6 7060 chrX 4157895 intron Fas2 - chrX 4161425 intron Fas2 - chrX 4164955 intron Fas2 - chrX_4_4160001 chrX_4160001 RAL-799 1541 chrX 4358087 4358116 chrX 4358189 4358218 7 102 3.0 0.0 1.5 2.8 131 chrX 4358087 intron norpA + chrX 4358152 intron norpA + chrX 4358218 intron norpA + chrX_7_4355001 chrX_4355001 RAL-799 1542 chrX 4361443 4361469 chrX 4361522 4361548 5 79 1.5 1.0 1.2 2.3 105 chrX 4361443 intron norpA + chrX 4361496 intron norpA + chrX 4361548 intron norpA + chrX_5_4360001 chrX_4360001 RAL-799 1543 chrX 4389376 4389380 chrX 12946235 12946235 4 8556857 4.0 4.5 4.2 0.8 8556859 chrX 4389376 intron CR32773 - chrX 8667806 intergenic not near genes chrX 12946235 3` UTR fne + chrX_4_8665001 chrX_8665001 RAL-799 1544 chrX 4396974 4397088 chrX 4397059 4397174 17 83 0.5 0.0 0.2 14.2 200 chrX 4396974 intron CR32773 - chrX 4397074 intron CR32773 - chrX 4397174 intron CR32773 - chrX_17_4395001 chrX_4395001 RAL-799 1545 chrX 4409142 4409153 chrX 4409227 4409238 5 85 3.0 2.0 2.5 1.4 96 chrX 4409142 intron CR32773 - chrX 4409190 intron CR32773 - chrX 4409238 intron CR32773 - chrX_5_4405001 chrX_4405001 RAL-799 1546 chrX 4700390 4700425 chrX 4700733 4700768 jockey 8 343 1.0 2.0 1.5 3.2 378 chrX 4700390 3` UTR ctp + chrX 4700579 3` UTR ctp + chrX 4700768 3` UTR ctp + chrX_8_4700001 chrX_4700001 RAL-799 1547 chrX 4757384 4757409 chrX 4757462 4757488 4 79 1.0 0.0 0.5 2.7 104 chrX 4757384 intergenic not near genes chrX 4757436 intergenic not near genes chrX 4757488 intergenic not near genes chrX_4_4755001 chrX_4755001 RAL-799 1548 chrX 4763251 4763273 chrX 4763739 4763759 Stalker4 5 487 2.5 0.5 1.5 2.0 508 chrX 4763251 intergenic not near genes chrX 4763505 intergenic not near genes chrX 4763759 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-799 1549 chrX 4792378 4792403 chrX 4792811 4792834 jockey 5 432 1.0 3.0 2.0 1.7 456 chrX 4792378 intergenic not near genes chrX 4792606 intergenic not near genes chrX 4792834 intergenic not near genes chrX_5_4790001 chrX_4790001 RAL-799 1550 chrX 4827654 4827679 chrX 4827736 4827761 10 82 1.5 2.0 1.8 3.6 107 chrX 4827654 intergenic not near genes chrX 4827708 intergenic not near genes chrX 4827761 intergenic not near genes chrX_10_4825001 chrX_4825001 RAL-799 1551 chrX 4827970 4828000 chrX 4835341 4835371 Stalker4 9 7370 2.5 4.0 3.2 2.1 7401 chrX 4827970 intergenic not near genes chrX 4831670 intergenic not near genes chrX 4835371 intergenic not near genes chrX_9_4830001 chrX_4830001 RAL-799 1552 chrX 4878881 4878908 chrX 4878990 4879017 4 109 0.5 0.5 0.5 2.7 136 chrX 4878881 intron CG42594 + chrX 4878949 intron CG42594 + chrX 4879017 intron CG42594 + chrX_4_4875001 chrX_4875001 RAL-799 1553 chrX 4893369 4893390 chrX 4893638 4893658 7 269 6.5 2.5 4.5 1.3 289 chrX 4893369 intron CG42594 + chrX 4893514 intron CG42594 + chrX 4893658 intron CG42594 + chrX_7_4890001 chrX_4890001 RAL-799 1554 chrX 4990045 4990068 chrX 4997259 4997282 roo 6 7214 2.5 1.0 1.8 2.1 7237 chrX 4990045 intron CR44833 - chrX 4993664 intron CR44833 - chrX 4997282 intron CR44833 - chrX_6_4990001 chrX_4990001 RAL-799 1555 chrX 5096273 5096301 chrX 5103838 5103866 springer 6 7564 2.5 3.5 3.0 1.5 7593 chrX 5096273 intron,intron CG15465 +,rg + chrX 5100070 intron,intron CG15465 +,rg + chrX 5103866 intron,intron CG15465 +,rg + chrX_6_5100001 chrX_5100001 RAL-799 1556 chrX 5206307 5206323 chrX 5206580 5206596 4 273 1.0 5.0 3.0 1.0 289 chrX 5206307 intron,intron CG15465 +,rg + chrX 5206452 intron,intron CG15465 +,rg + chrX 5206596 intron,intron CG15465 +,rg + chrX_4_5205001 chrX_5205001 RAL-799 1557 chrX 5338707 5338733 chrX 5339960 5339983 jockey 8 1252 1.0 1.0 1.0 4.0 1276 chrX 5338707 intergenic not near genes chrX 5339345 intergenic not near genes chrX 5339983 intergenic SK + chrX_8_5335001 chrX_5335001 RAL-799 1558 chrX 5555371 5555386 chrX 5555495 5555508 4 124 5.5 3.5 4.5 0.7 137 chrX 5555371 intron Vsx2 - chrX 5555440 intron Vsx2 - chrX 5555508 intron Vsx2 - chrX_4_5555001 chrX_5555001 RAL-799 1559 chrX 5798865 5798891 chrX 5799027 5799053 8 161 0.5 2.0 1.2 3.6 188 chrX 5798865 intergenic not near genes chrX 5798959 intergenic not near genes chrX 5799053 intergenic not near genes chrX_8_5795001 chrX_5795001 RAL-799 1560 chrX 5883813 5883830 chrX 5884054 5884071 pogo 6 241 0.5 3.0 1.8 2.1 258 chrX 5883813 intron CR45668 - chrX 5883942 intron CR45668 - chrX 5884071 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-799 1561 chrX 6171584 6171617 chrX 6179016 6179050 Quasimodo 5 7433 3.0 2.5 2.8 1.3 7466 chrX 6171584 intron Ca-alpha1T - chrX 6175317 intron Ca-alpha1T - chrX 6179050 intron Ca-alpha1T - chrX_5_6175001 chrX_6175001 RAL-799 1562 chrX 6315174 6315188 chrX 6315289 6315318 5 127 3.5 1.5 2.5 1.4 144 chrX 6315174 intron CG15894 + chrX 6315246 intron CG15894 + chrX 6315318 intron CG15894 + chrX_5_6315001 chrX_6315001 RAL-799 1563 chrX 6335212 6335244 chrX 6337722 6337753 Tirant 8 2509 0.5 2.0 1.2 3.6 2541 chrX 6335212 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337753 intergenic CG3842 + chrX_8_6335001 chrX_6335001 RAL-799 1564 chrX 6388666 6388695 chrX 6388742 6388771 6 76 1.0 2.5 1.8 2.1 105 chrX 6388666 intergenic not near genes chrX 6388718 intergenic not near genes chrX 6388771 intergenic not near genes chrX_6_6385001 chrX_6385001 RAL-799 1565 chrX 6392869 6392901 chrX 6397634 6397666 Doc 4 4765 3.0 3.0 3.0 1.0 4797 chrX 6392869 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397666 intergenic not near genes chrX_4_6395001 chrX_6395001 RAL-799 1566 chrX 6404841 6404866 chrX 6404968 6404993 6 126 1.5 1.0 1.2 2.7 152 chrX 6404841 intergenic not near genes chrX 6404917 intergenic not near genes chrX 6404993 intergenic not near genes chrX_6_6400001 chrX_6400001 RAL-799 1567 chrX 6562816 6562846 chrX 6571298 6571328 Tirant 16 8481 5.5 1.5 3.5 3.6 8512 chrX 6562816 intron CG34417 + chrX 6567072 intron CG34417 + chrX 6571328 intron CG34417 + chrX_16_6565001 chrX_6565001 RAL-799 1568 chrX 6795007 6795019 chrX 6795093 6795105 4 86 1.5 4.0 2.8 1.1 98 chrX 6795007 intron C3G - chrX 6795056 intron C3G - chrX 6795105 intron C3G - chrX_4_6795001 chrX_6795001 RAL-799 1569 chrX 6896219 6896227 chrX 6896300 6896308 4 80 2.0 2.5 2.2 1.2 89 chrX 6896219 intergenic not near genes chrX 6896264 intergenic not near genes chrX 6896308 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-799 1570 chrX 6941072 6941098 chrX 6941290 6941322 4 222 1.0 0.0 0.5 2.7 250 chrX 6941072 intron CG14431 + chrX 6941197 intron CG14431 + chrX 6941322 intron CG14431 + chrX_4_6940001 chrX_6940001 RAL-799 1571 chrX 7125252 7125277 chrX 7134410 7134436 roo 5 9159 1.5 2.0 1.8 1.8 9184 chrX 7125252 intergenic not near genes chrX 7129844 intergenic not near genes chrX 7134436 intergenic not near genes chrX_5_7125001 chrX_7125001 RAL-799 1572 chrX 7459070 7459075 chrX 7459156 7459162 4 86 3.0 4.5 3.8 0.8 92 chrX 7459070 intergenic not near genes chrX 7459116 intergenic not near genes chrX 7459162 intergenic not near genes chrX_4_7455001 chrX_7455001 RAL-799 1573 chrX 7702906 7702932 chrX 7703343 7703371 jockey 9 438 2.0 3.0 2.5 2.6 465 chrX 7702906 intron CHES-1-like - chrX 7703138 intron CHES-1-like - chrX 7703371 intron CHES-1-like - chrX_9_7700001 chrX_7700001 RAL-799 1574 chrX 7832435 7832461 chrX 7832523 7832550 5 89 0.0 0.0 0.0 5.0 115 chrX 7832435 intron CG1402 + chrX 7832492 intron CG1402 + chrX 7832550 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-799 1575 chrX 7845725 7845757 chrX 7847215 7847248 hopper2 8 1491 6.0 3.0 4.5 1.5 1523 chrX 7845725 intergenic not near genes chrX 7846486 intergenic not near genes chrX 7847248 intergenic not near genes chrX_8_7845001 chrX_7845001 RAL-799 1576 chrX 7960883 7960904 chrX 7960972 7960993 5 89 0.5 2.0 1.2 2.3 110 chrX 7960883 intron,5` UTR sws -,CR45620 + chrX 7960938 intron sws - chrX 7960993 intron sws - chrX_5_7960001 chrX_7960001 RAL-799 1577 chrX 8085574 8085594 chrX 8085660 8085680 4 86 2.0 2.0 2.0 1.3 106 chrX 8085574 intron,5` UTR CG2256 -,CR45535 + chrX 8085627 intron,5` UTR CG2256 -,CR45535 + chrX 8085680 intron,5` UTR CG2256 -,CR45535 + chrX_4_8085001 chrX_8085001 RAL-799 1578 chrX 8092295 8092314 chrX 8092380 8092399 4 85 1.5 1.5 1.5 1.6 104 chrX 8092295 intron Ubc-E2H - chrX 8092347 intron Ubc-E2H - chrX 8092399 intron Ubc-E2H - chrX_4_8090001 chrX_8090001 RAL-799 1579 chrX 8305190 8305215 chrX 8305271 8305295 5 80 1.5 3.5 2.5 1.4 105 chrX 8305190 intron nAChRalpha3 - chrX 8305242 intron nAChRalpha3 - chrX 8305295 intron nAChRalpha3 - chrX_5_8305001 chrX_8305001 RAL-799 1580 chrX 8364849 8364870 chrX 8365246 8365266 BS 9 397 2.0 2.0 2.0 3.0 417 chrX 8364849 intron nAChRalpha3 - chrX 8365058 intron nAChRalpha3 - chrX 8365266 intron nAChRalpha3 - chrX_9_8365001 chrX_8365001 RAL-799 1581 chrX 8708704 8708716 chrX 8708887 8708899 7 183 15.0 7.0 11.0 0.6 195 chrX 8708704 intergenic not near genes chrX 8708802 intergenic not near genes chrX 8708899 intergenic not near genes chrX_7_8705001 chrX_8705001 RAL-799 1582 chrX 8894106 8894130 chrX 8894207 8894230 7 101 2.0 4.0 3.0 1.8 124 chrX 8894106 intron Moe - chrX 8894168 intron Moe - chrX 8894230 intron Moe - chrX_7_8890001 chrX_8890001 RAL-799 1583 chrX 8922325 8922363 chrX 8922759 8922797 jockey 13 434 5.5 3.5 4.5 2.4 472 chrX 8922325 intron rdgA + chrX 8922561 intron rdgA + chrX 8922797 intron rdgA + chrX_13_8920001 chrX_8920001 RAL-799 1584 chrX 8948757 8948791 chrX 8956267 8956297 roo 4 7509 1.0 0.5 0.8 2.2 7540 chrX 8948757 intron rdgA + chrX 8952527 intron rdgA + chrX 8956297 intron rdgA + chrX_4_8950001 chrX_8950001 RAL-799 1585 chrX 9129478 9129513 chrX 9129564 9129599 8 86 1.0 3.0 2.0 2.7 121 chrX 9129478 intron fend - chrX 9129538 intron fend - chrX 9129599 intron fend - chrX_8_9125001 chrX_9125001 RAL-799 1586 chrX 9229910 9229938 chrX 9229990 9230018 6 80 3.5 5.0 4.2 1.2 108 chrX 9229910 intron CG12121 - chrX 9229964 intron CG12121 - chrX 9230018 intron CG12121 - chrX_6_9225001 chrX_9225001 RAL-799 1587 chrX 9337949 9337972 chrX 9338041 9338064 5 92 1.5 2.5 2.0 1.7 115 chrX 9337949 intron CG34449 - chrX 9338006 intron CG34449 - chrX 9338064 exon CG34449 - chrX_5_9335001 chrX_9335001 RAL-799 1588 chrX 9575791 9575812 chrX 9576113 9576135 mdg3 12 323 5.0 8.0 6.5 1.6 344 chrX 9575791 intron,exon CG32699 -,CG42395 - chrX 9575963 intron,intron CG32699 -,CG42395 - chrX 9576135 intron,5` UTR CG32699 -,CG42395 - chrX_12_9575001 chrX_9575001 RAL-799 1589 chrX 9784172 9784205 chrX 9784360 9784390 13 188 2.0 1.5 1.8 4.6 218 chrX 9784172 intron CG32698 + chrX 9784281 intron CG32698 + chrX 9784390 intron CG32698 + chrX_13_9780001 chrX_9780001 RAL-799 1590 chrX 10150014 10150030 chrX 10150237 10150253 4 222 1.5 0.5 1.0 2.0 239 chrX 10150014 intron CR44894 - chrX 10150134 intron CR44894 - chrX 10150253 intron CR44894 - chrX_4_10150001 chrX_10150001 RAL-799 1591 chrX 10317556 10317577 chrX 10317634 10317655 4 78 0.5 0.0 0.2 3.3 99 chrX 10317556 intron alpha-Man-I - chrX 10317606 intron alpha-Man-I - chrX 10317655 intron alpha-Man-I - chrX_4_10315001 chrX_10315001 RAL-799 1592 chrX 10330670 10330673 chrX 10330869 10330891 4 212 8.5 5.5 7.0 0.5 221 chrX 10330670 exon CG15306 - chrX 10330780 exon CG15306 - chrX 10330891 exon CG15306 - chrX_4_10330001 chrX_10330001 RAL-799 1593 chrX 10367191 10367207 chrX 10367300 10367316 7 109 3.5 0.5 2.0 2.3 125 chrX 10367191 exon CG32679 - chrX 10367254 intron CG32679 - chrX 10367316 intron CG32679 - chrX_7_10365001 chrX_10365001 RAL-799 1594 chrX 10446694 10446711 chrX 10446776 10446793 4 82 0.5 2.0 1.2 1.8 99 chrX 10446694 intron CG32683 - chrX 10446744 intron CG32683 - chrX 10446793 intron CG32683 - chrX_4_10445001 chrX_10445001 RAL-799 1595 chrX 10453080 10453092 chrX 10453271 10453283 4 191 0.0 0.5 0.2 3.3 203 chrX 10453080 intron CG32683 - chrX 10453182 intron CG32683 - chrX 10453283 intron CG32683 - chrX_4_10450001 chrX_10450001 RAL-799 1596 chrX 10550855 10550884 chrX 10552321 10552351 hobo 6 1464 4.0 1.5 2.8 1.6 1496 chrX 10550855 intron spri - chrX 10551603 intron spri - chrX 10552351 intron spri - chrX_6_10550001 chrX_10550001 RAL-799 1597 chrX 10803037 10803047 chrX 10803120 10803132 4 84 4.5 5.0 4.8 0.7 95 chrX 10803037 intron Imp - chrX 10803084 intron Imp - chrX 10803132 intron Imp - chrX_4_10800001 chrX_10800001 RAL-799 1598 chrX 10933923 10933941 chrX 10934011 10934028 9 87 0.0 2.0 1.0 4.5 105 chrX 10933923 intron Myo10A + chrX 10933976 intron Myo10A + chrX 10934028 intron Myo10A + chrX_9_10930001 chrX_10930001 RAL-799 1599 chrX 10937691 10937693 chrX 10937831 10937832 4 140 0.5 0.0 0.2 3.3 141 chrX 10937691 intron Myo10A + chrX 10937762 intron Myo10A + chrX 10937832 intron Myo10A + chrX_4_10935001 chrX_10935001 RAL-799 1600 chrX 11062448 11062463 chrX 11062543 11062558 9 95 3.5 1.5 2.5 2.6 110 chrX 11062448 exon CG1537 - chrX 11062503 intron CG1537 - chrX 11062558 intron CG1537 - chrX_9_11060001 chrX_11060001 RAL-799 1601 chrX 11095996 11096024 chrX 11103098 11103126 HMS-Beagle 5 7102 0.0 3.5 1.8 1.8 7130 chrX 11095996 intergenic not near genes chrX 11099561 intergenic not near genes chrX 11103126 intron CG42249 + chrX_5_11095001 chrX_11095001 RAL-799 1602 chrX 11133934 11133959 chrX 11134518 11134543 7 584 23.5 18.0 20.8 0.3 609 chrX 11133934 intron Klp10A - chrX 11134238 intron Klp10A - chrX 11134543 intron Klp10A - chrX_7_11130001 chrX_11130001 RAL-799 1603 chrX 11141987 11141993 chrX 11142063 11142069 4 76 5.0 0.0 2.5 1.1 82 chrX 11141987 intergenic CG15199 - chrX 11142028 intergenic CG15199 - chrX 11142069 intergenic CG15199 -,CG15202 + chrX_4_11140001 chrX_11140001 RAL-799 1604 chrX 11205299 11205321 chrX 11205375 11205397 5 76 0.0 2.0 1.0 2.5 98 chrX 11205299 intergenic not near genes chrX 11205348 intergenic not near genes chrX 11205397 intergenic not near genes chrX_5_11205001 chrX_11205001 RAL-799 1605 chrX 11256085 11256106 chrX 11256669 11256690 7 584 3.0 4.5 3.8 1.5 605 chrX 11256085 intron CG44422 - chrX 11256388 intron CG44422 - chrX 11256690 intron CG44422 - chrX_7_11255001 chrX_11255001 RAL-799 1606 chrX 11554858 11554883 chrX 11555275 11555299 5 416 3.5 11.5 7.5 0.6 441 chrX 11554858 3` UTR Drak + chrX 11555078 3` UTR CG1572 - chrX 11555299 3` UTR CG1572 - chrX_5_11555001 chrX_11555001 RAL-799 1607 chrX 11633421 11633450 chrX 11640475 11640504 297 5 7054 1.5 1.5 1.5 2.0 7083 chrX 11633421 intron Ptp10D + chrX 11636962 intron Ptp10D + chrX 11640504 intron Ptp10D + chrX_5_11635001 chrX_11635001 RAL-799 1608 chrX 11922365 11922379 chrX 11922501 11922515 4 136 1.5 1.0 1.2 1.8 150 chrX 11922365 exon Sclp - chrX 11922440 intron Sclp - chrX 11922515 intron Sclp - chrX_4_11920001 chrX_11920001 RAL-799 1609 chrX 12038090 12038117 chrX 12038284 12038311 13 194 3.5 6.5 5.0 2.2 221 chrX 12038090 intergenic not near genes chrX 12038200 intergenic not near genes chrX 12038311 intergenic not near genes chrX_13_12035001 chrX_12035001 RAL-799 1610 chrX 12168139 12168147 chrX 12173581 12173589 I-element 5 5442 3.5 1.5 2.5 1.4 5450 chrX 12168139 intron Ten-a + chrX 12170864 intron Ten-a + chrX 12173589 intron Ten-a + chrX_5_12170001 chrX_12170001 RAL-799 1611 chrX 12283594 12283620 chrX 12283682 12283708 7 88 1.0 2.0 1.5 2.8 114 chrX 12283594 intron Ten-a + chrX 12283651 intron Ten-a + chrX 12283708 intron Ten-a + chrX_7_12280001 chrX_12280001 RAL-799 1612 chrX 12301963 12301989 chrX 12303269 12303294 X-element 5 1306 0.5 2.5 1.5 2.0 1331 chrX 12301963 intron Ten-a + chrX 12302628 intron Ten-a + chrX 12303294 intron Ten-a + chrX_5_12300001 chrX_12300001 RAL-799 1613 chrX 12375491 12375502 chrX 12375589 12375600 4 98 2.5 1.0 1.8 1.4 109 chrX 12375491 intergenic Ir11a - chrX 12375546 intergenic Ir11a - chrX 12375600 exon Ir11a - chrX_4_12375001 chrX_12375001 RAL-799 1614 chrX 13236884 13236897 chrX 13236967 13236982 6 84 0.0 1.5 0.8 3.3 98 chrX 13236884 intron mew - chrX 13236933 intron mew - chrX 13236982 intron mew - chrX_6_13235001 chrX_13235001 RAL-799 1615 chrX 13299973 13299997 chrX 13300222 13300246 5 248 1.5 1.0 1.2 2.3 273 chrX 13299973 intron CG1764 - chrX 13300110 intron CG1764 - chrX 13300246 intron CG1764 - chrX_5_13300001 chrX_13300001 RAL-799 1616 chrX 13301833 13301859 chrX 13301985 13302011 5 151 1.0 2.0 1.5 2.0 178 chrX 13301833 intron CG1764 - chrX 13301922 intron CG1764 - chrX 13302011 intron CG1764 - chrX_5_13300001 chrX_13300001 RAL-799 1617 chrX 13429471 13429487 chrX 13430620 13430629 jockey 4 1147 0.0 3.0 1.5 1.6 1158 chrX 13429471 intergenic not near genes chrX 13430050 intergenic not near genes chrX 13430629 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-799 1618 chrX 13442154 13442171 chrX 13442245 13442262 5 91 1.5 3.0 2.2 1.6 108 chrX 13442154 intergenic not near genes chrX 13442208 intergenic not near genes chrX 13442262 intergenic not near genes chrX_5_13440001 chrX_13440001 RAL-799 1619 chrX 13507306 13507340 chrX 13507386 13507421 15 80 1.5 2.5 2.0 5.0 115 chrX 13507306 intron Neto + chrX 13507364 intron Neto + chrX 13507421 intron Neto + chrX_15_13505001 chrX_13505001 RAL-799 1620 chrX 13563420 13563433 chrX 13563500 13563513 6 80 2.5 0.5 1.5 2.4 93 chrX 13563420 intergenic CG32633 +,Tango13 + chrX 13563466 intergenic CG32633 +,Tango13 + chrX 13563513 intergenic CG32633 +,Tango13 + chrX_6_13560001 chrX_13560001 RAL-799 1621 chrX 13671705 13671730 chrX 13671843 13671870 12 139 2.0 4.0 3.0 3.0 165 chrX 13671705 intron CG15760 + chrX 13671788 intron CG15760 + chrX 13671870 intron CG15760 + chrX_12_13670001 chrX_13670001 RAL-799 1622 chrX 13935518 13935523 chrX 13935601 13935606 4 83 5.0 4.0 4.5 0.7 88 chrX 13935518 intron mamo - chrX 13935562 intron mamo - chrX 13935606 intron mamo - chrX_4_13935001 chrX_13935001 RAL-799 1623 chrX 13937977 13938008 chrX 13941248 13941279 I-element 8 3271 1.0 2.0 1.5 3.2 3302 chrX 13937977 intron mamo - chrX 13939628 intron mamo - chrX 13941279 intron mamo - chrX_8_13935001 chrX_13935001 RAL-799 1624 chrX 13943272 13943300 chrX 13943363 13943391 6 91 0.0 3.0 1.5 2.4 119 chrX 13943272 intron mamo - chrX 13943332 intron mamo - chrX 13943391 intron mamo - chrX_6_13940001 chrX_13940001 RAL-799 1625 chrX 13975879 13975907 chrX 13975956 13975984 6 77 0.0 4.5 2.2 1.9 105 chrX 13975879 intron mamo - chrX 13975932 intron mamo - chrX 13975984 intron mamo - chrX_6_13975001 chrX_13975001 RAL-799 1626 chrX 14105021 14105056 chrX 14114172 14114203 roo 8 9148 1.0 0.5 0.8 4.4 9182 chrX 14105021 intergenic not near genes chrX 14109612 intergenic not near genes chrX 14114203 5` UTR CR44657 + chrX_8_14105001 chrX_14105001 RAL-799 1627 chrX 14115668 14115700 chrX 14115755 14115786 9 87 4.0 2.0 3.0 2.2 118 chrX 14115668 5` UTR CR44657 + chrX 14115727 5` UTR CR44657 + chrX 14115786 5` UTR CR44657 + chrX_9_14115001 chrX_14115001 RAL-799 1628 chrX 14516198 14516220 chrX 14516279 14516301 4 81 2.0 1.5 1.8 1.4 103 chrX 14516198 intergenic not near genes chrX 14516250 intergenic not near genes chrX 14516301 intergenic not near genes chrX_4_14515001 chrX_14515001 RAL-799 1629 chrX 14636462 14636493 chrX 14641903 14641933 I-element 8 5437 2.0 0.5 1.2 3.6 5471 chrX 14636462 intron NetA - chrX 14639198 intron NetA - chrX 14641933 intron NetA - chrX_8_14635001 chrX_14635001 RAL-799 1630 chrX 14813747 14813763 chrX 14813824 14813835 4 76 3.0 3.5 3.2 1.0 88 chrX 14813747 intron rut - chrX 14813791 intron rut - chrX 14813835 intron rut - chrX_4_14810001 chrX_14810001 RAL-799 1631 chrX 14818763 14818798 chrX 14823967 14824002 copia 9 5201 2.0 1.0 1.5 3.6 5239 chrX 14818763 intron rut - chrX 14821382 intron rut - chrX 14824002 intron rut - chrX_9_14820001 chrX_14820001 RAL-799 1632 chrX 14952442 14952462 chrX 14952610 14952630 8 168 1.5 4.5 3.0 2.0 188 chrX 14952442 intron,3` UTR pdgy -,CR44831 - chrX 14952536 intron,3` UTR pdgy -,CR44831 - chrX 14952630 intron,3` UTR pdgy -,CR44831 - chrX_8_14950001 chrX_14950001 RAL-799 1633 chrX 15413054 15413061 chrX 15417356 15417363 Juan 7 4302 4.5 1.0 2.8 1.8 4309 chrX 15413054 intron Cngl - chrX 15415208 intron Cngl - chrX 15417363 intron Cngl - chrX_7_15415001 chrX_15415001 RAL-799 1634 chrX 15413065 15413073 chrX 15417349 15417375 Juan 5 4296 2.0 1.0 1.5 2.0 4310 chrX 15413065 intron Cngl - chrX 15415220 intron Cngl - chrX 15417375 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-799 1635 chrX 15435688 15435705 chrX 15436121 15436138 rover 6 433 0.0 5.0 2.5 1.7 450 chrX 15435688 intron Cngl - chrX 15435913 intron Cngl - chrX 15436138 intron Cngl - chrX_6_15435001 chrX_15435001 RAL-799 1636 chrX 15492512 15492529 chrX 15492603 15492620 5 91 3.0 3.0 3.0 1.2 108 chrX 15492512 intron Gmap + chrX 15492566 intron Gmap + chrX 15492620 intron Gmap + chrX_5_15490001 chrX_15490001 RAL-799 1637 chrX 15678046 15678068 chrX 15678122 15678145 5 77 3.0 3.5 3.2 1.2 99 chrX 15678046 intergenic CG12708 + chrX 15678096 intergenic CG12708 + chrX 15678145 intergenic CG12708 + chrX_5_15675001 chrX_15675001 RAL-799 1638 chrX 15898446 15898461 chrX 15898600 15898615 5 154 2.0 2.5 2.2 1.6 169 chrX 15898446 intron shi + chrX 15898530 intron shi + chrX 15898615 intron shi + chrX_5_15895001 chrX_15895001 RAL-799 1639 chrX 16295529 16295549 chrX 16295613 16295633 5 84 0.5 0.0 0.2 4.2 104 chrX 16295529 intron CG9911 - chrX 16295581 intron CG9911 - chrX 16295633 intron CG9911 - chrX_5_16295001 chrX_16295001 RAL-799 1640 chrX 16308906 16308941 chrX 16308989 16309023 4 82 0.0 2.0 1.0 2.0 117 chrX 16308906 intergenic CR45485 +,CG9914 - chrX 16308964 intergenic CR45485 +,CG9914 - chrX 16309023 intergenic CR45485 +,CG9914 - chrX_4_16305001 chrX_16305001 RAL-799 1641 chrX 16329434 16329445 chrX 16329517 16329528 5 83 0.0 5.0 2.5 1.4 94 chrX 16329434 intron CG9919 - chrX 16329481 intron CG9919 - chrX 16329528 exon CG9919 - chrX_5_16325001 chrX_16325001 RAL-799 1642 chrX 16437608 16437634 chrX 16437695 16437721 4 87 1.0 1.5 1.2 1.8 113 chrX 16437608 3` UTR,3` UTR hang +,CG9947 - chrX 16437664 3` UTR,3` UTR hang +,CG9947 - chrX 16437721 3` UTR,3` UTR hang +,CG9947 - chrX_4_16435001 chrX_16435001 RAL-799 1643 chrX 16492645 16492679 chrX 16498222 16498256 mdg3 9 5577 1.0 2.0 1.5 3.6 5611 chrX 16492645 intron para - chrX 16495450 intron para - chrX 16498256 intron para - chrX_9_16495001 chrX_16495001 RAL-799 1644 chrX 16689633 16689653 chrX 16689719 16689739 5 83 2.5 2.5 2.5 1.4 106 chrX 16689633 intron Sep4 - chrX 16689686 intron Sep4 - chrX 16689739 intron Sep4 - chrX_5_16685001 chrX_16685001 RAL-799 1645 chrX 16936019 16936041 chrX 16936437 16936444 jockey 6 415 0.0 4.5 2.2 1.9 425 chrX 16936019 intron CG4928 + chrX 16936232 intron CG4928 + chrX 16936444 intron CG4928 + chrX_6_16935001 chrX_16935001 RAL-799 1646 chrX 17089604 17089628 chrX 17089730 17089752 6 125 1.5 1.0 1.2 2.7 148 chrX 17089604 intergenic not near genes chrX 17089678 intergenic not near genes chrX 17089752 intergenic not near genes chrX_6_17085001 chrX_17085001 RAL-799 1647 chrX 17195214 17195236 chrX 17200300 17200317 flea 5 5085 2.0 1.0 1.5 2.0 5103 chrX 17195214 3` UTR baz + chrX 17197766 3` UTR baz + chrX 17200317 3` UTR baz + chrX_5_17195001 chrX_17195001 RAL-799 1648 chrX 17316367 17316396 chrX 17316450 17316480 5 83 0.5 0.0 0.2 4.2 113 chrX 17316367 intron B-H2 + chrX 17316424 intron B-H2 + chrX 17316480 intron B-H2 + chrX_5_17315001 chrX_17315001 RAL-799 1649 chrX 17352594 17352623 chrX 17352694 17352716 5 100 0.0 3.0 1.5 2.0 122 chrX 17352594 intergenic not near genes chrX 17352655 intergenic not near genes chrX 17352716 intergenic not near genes chrX_5_17350001 chrX_17350001 RAL-799 1650 chrX 17502358 17502372 chrX 17502438 17502452 6 80 0.5 4.0 2.2 1.9 94 chrX 17502358 intron CG43658 - chrX 17502405 intron CG43658 - chrX 17502452 intron CG43658 - chrX_6_17500001 chrX_17500001 RAL-799 1651 chrX 17680895 17680925 chrX 17680972 17681002 8 77 2.0 4.0 3.0 2.0 107 chrX 17680895 intron chas - chrX 17680948 intron chas - chrX 17681002 intron chas - chrX_8_17680001 chrX_17680001 RAL-799 1652 chrX 17782575 17782595 chrX 17782664 17782684 8 89 2.5 3.5 3.0 2.0 109 chrX 17782575 intergenic not near genes chrX 17782630 intergenic not near genes chrX 17782684 intergenic not near genes chrX_8_17780001 chrX_17780001 RAL-799 1653 chrX 17792966 17792984 chrX 17796264 17796282 flea 5 3298 1.5 5.5 3.5 1.1 3316 chrX 17792966 intron OdsH + chrX 17794624 intron OdsH + chrX 17796282 intron OdsH + chrX_5_17790001 chrX_17790001 RAL-799 1654 chrX 17965712 17965732 chrX 17965789 17965809 8 77 0.5 0.0 0.2 6.7 97 chrX 17965712 intron Sh - chrX 17965760 intron Sh - chrX 17965809 intron Sh - chrX_8_17965001 chrX_17965001 RAL-799 1655 chrX 17994892 17994907 chrX 17994972 17994987 4 80 1.5 2.5 2.0 1.3 95 chrX 17994892 intron Sh - chrX 17994940 intron Sh - chrX 17994987 intron Sh - chrX_4_17990001 chrX_17990001 RAL-799 1656 chrX 18122821 18122854 chrX 18122896 18122930 6 76 2.5 1.0 1.8 2.1 109 chrX 18122821 5` UTR CR45606 + chrX 18122876 5` UTR CR45606 + chrX 18122930 intergenic CR45606 + chrX_6_18120001 chrX_18120001 RAL-799 1657 chrX 18128217 18128242 chrX 18131050 18131077 7 2834 18.5 16.5 17.5 0.4 2860 chrX 18128217 intergenic mir-210 + chrX 18129647 3` UTR CG43133 - chrX 18131077 3` UTR ari-1 - chrX_7_18125001 chrX_18125001 RAL-799 1658 chrX 18194066 18194104 chrX 18194601 18194639 BS 8 535 2.0 2.0 2.0 2.7 573 chrX 18194066 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194639 intron Frq2 + chrX_8_18190001 chrX_18190001 RAL-799 1659 chrX 18427380 18427409 chrX 18427791 18427820 4 411 4.0 2.5 3.2 1.0 440 chrX 18427380 intergenic CG42323 + chrX 18427600 intergenic not near genes chrX 18427820 intergenic not near genes chrX_4_18425001 chrX_18425001 RAL-799 1660 chrX 18429496 18429521 chrX 18434807 18434832 Transpac 4 5311 1.5 3.0 2.2 1.2 5336 chrX 18429496 intergenic not near genes chrX 18432164 intergenic not near genes chrX 18434832 intergenic not near genes chrX_4_18430001 chrX_18430001 RAL-799 1661 chrX 18645013 18645046 chrX 18645111 18645144 6 98 0.5 0.5 0.5 4.0 131 chrX 18645013 intron Rip11 - chrX 18645078 intron Rip11 - chrX 18645144 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-799 1662 chrX 18774453 18774468 chrX 18774538 18774553 8 85 6.5 0.0 3.2 1.9 100 chrX 18774453 intergenic CCKLR-17D3 - chrX 18774503 intergenic CCKLR-17D3 - chrX 18774553 intergenic not near genes chrX_8_18770001 chrX_18770001 RAL-799 1663 chrX 18896911 18896937 chrX 18896984 18897014 11 76 3.5 3.0 3.2 2.6 103 chrX 18896911 intergenic CG7349 + chrX 18896962 intergenic CG7349 + chrX 18897014 intergenic CG7349 + chrX_11_18895001 chrX_18895001 RAL-799 1664 chrX 19014367 19014385 chrX 19014445 19014462 5 77 0.5 2.5 1.5 2.0 95 chrX 19014367 intron CG43759 + chrX 19014414 intron CG43759 + chrX 19014462 intron CG43759 + chrX_5_19010001 chrX_19010001 RAL-799 1665 chrX 19060407 19060429 chrX 19065191 19065213 Doc 4 4784 1.5 3.5 2.5 1.1 4806 chrX 19060407 intron CG14190 + chrX 19062810 intron CG14190 + chrX 19065213 intron CG14190 + chrX_4_19060001 chrX_19060001 RAL-799 1666 chrX 19098770 19098781 chrX 19098848 19098859 5 78 0.5 2.0 1.2 2.3 89 chrX 19098770 intergenic not near genes chrX 19098814 intergenic not near genes chrX 19098859 intergenic not near genes chrX_5_19095001 chrX_19095001 RAL-799 1667 chrX 19099656 19099677 chrX 19099739 19099760 5 83 1.5 1.0 1.2 2.3 104 chrX 19099656 intergenic not near genes chrX 19099708 intergenic not near genes chrX 19099760 intergenic not near genes chrX_5_19095001 chrX_19095001 RAL-799 1668 chrX 19124434 19124459 chrX 19124522 19124547 5 88 1.5 1.0 1.2 2.3 113 chrX 19124434 intergenic CG15882 - chrX 19124490 intergenic CG15882 - chrX 19124547 intergenic CG15882 -,tgy - chrX_5_19120001 chrX_19120001 RAL-799 1669 chrX 19125694 19125705 chrX 19125823 19125834 5 129 4.5 3.5 4.0 1.0 140 chrX 19125694 intron tgy - chrX 19125764 intron tgy - chrX 19125834 intron tgy - chrX_5_19125001 chrX_19125001 RAL-799 1670 chrX 19125709 19125721 chrX 19125822 19125846 4 124 2.0 3.5 2.8 1.1 137 chrX 19125709 intron tgy - chrX 19125778 intron tgy - chrX 19125846 intron tgy - chrX_4_19125001 chrX_19125001 RAL-799 1671 chrX 19176207 19176228 chrX 19176291 19176312 6 84 6.5 2.5 4.5 1.1 105 chrX 19176207 3` UTR CG7556 - chrX 19176260 3` UTR CG7556 - chrX 19176312 3` UTR CG7556 - chrX_6_19175001 chrX_19175001 RAL-799 1672 chrX 19240234 19240243 chrX 19240318 19240329 4 85 0.5 3.0 1.8 1.4 95 chrX 19240234 intron CG14196 - chrX 19240282 intron CG14196 - chrX 19240329 intron CG14196 - chrX_4_19240001 chrX_19240001 RAL-799 1673 chrX 13057298 13057300 chrX 19242812 19242814 11 6185514 9.0 0.0 4.5 2.0 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_11_16150001 chrX_16150001 RAL-799 1674 chrX 19256651 19256673 chrX 19256730 19256752 6 79 5.5 3.5 4.5 1.1 101 chrX 19256651 intron rictor - chrX 19256702 intron rictor - chrX 19256752 intron rictor - chrX_6_19255001 chrX_19255001 RAL-799 1675 chrX 19285813 19285831 chrX 19286023 19286037 6 210 1.5 1.5 1.5 2.4 224 chrX 19285813 intron CG8034 - chrX 19285925 intron CG8034 - chrX 19286037 intron CG8034 - chrX_6_19285001 chrX_19285001 RAL-799 1676 chrX 19292353 19292385 chrX 19292446 19292478 5 93 1.0 2.5 1.8 1.8 125 chrX 19292353 intron CG8034 - chrX 19292416 intron CG8034 - chrX 19292478 intron CG8034 - chrX_5_19290001 chrX_19290001 RAL-799 1677 chrX 19315760 19315783 chrX 19315861 19315881 6 100 3.0 0.0 1.5 2.4 121 chrX 19315760 intron out - chrX 19315820 intron out - chrX 19315881 intron out - chrX_6_19315001 chrX_19315001 RAL-799 1678 chrX 19380160 19380184 chrX 19380399 19380423 pogo 5 240 4.0 1.5 2.8 1.3 263 chrX 19380160 intron kek5 + chrX 19380292 intron kek5 + chrX 19380423 intron kek5 + chrX_5_19380001 chrX_19380001 RAL-799 1679 chrX 19472120 19472152 chrX 19472690 19472716 jockey 8 568 3.0 3.0 3.0 2.0 596 chrX 19472120 intergenic kek5 + chrX 19472418 intergenic not near genes chrX 19472716 intergenic not near genes chrX_8_19470001 chrX_19470001 RAL-799 1680 chrX 19560676 19560690 chrX 19560775 19560789 5 99 1.5 3.5 2.5 1.4 113 chrX 19560676 3` UTR Grip84 - chrX 19560732 3` UTR Grip84 - chrX 19560789 3` UTR Grip84 - chrX_5_19560001 chrX_19560001 RAL-799 1681 chrX 19593961 19593975 chrX 19594046 19594060 7 85 1.5 4.0 2.8 1.8 99 chrX 19593961 exon CG14205 + chrX 19594010 intron CG14205 + chrX 19594060 intron CG14205 + chrX_7_19590001 chrX_19590001 RAL-799 1682 chrX 19710081 19710095 chrX 19711867 19711881 S-element 8 1784 2.0 4.0 3.0 2.0 1800 chrX 19710081 intron meso18E - chrX 19710981 intron meso18E - chrX 19711881 intron meso18E - chrX_8_19710001 chrX_19710001 RAL-799 1683 chrX 19744637 19744654 chrX 19744760 19744780 4 125 16.5 18.5 17.5 0.2 143 chrX 19744637 5` UTR,exon CG33932 +,Rpp20 + chrX 19744708 intron,intron CG33932 +,Rpp20 + chrX 19744780 5` UTR,exon CG33932 +,Rpp20 + chrX_4_19740001 chrX_19740001 RAL-799 1684 chrX 19822830 19822862 chrX 19822997 19823029 10 165 4.5 4.5 4.5 1.8 199 chrX 19822830 intergenic not near genes chrX 19822930 intergenic skpE - chrX 19823029 intergenic skpE - chrX_10_19820001 chrX_19820001 RAL-799 1685 chrX 19881461 19881483 chrX 19881542 19881564 5 81 1.0 2.5 1.8 1.8 103 chrX 19881461 intron Hers + chrX 19881512 intron Hers + chrX 19881564 intron Hers + chrX_5_19880001 chrX_19880001 RAL-799 1686 chrX 19983864 19983887 chrX 19983944 19983966 6 80 0.5 1.5 1.0 3.0 102 chrX 19983864 intergenic not near genes chrX 19983915 intergenic not near genes chrX 19983966 intergenic not near genes chrX_6_19980001 chrX_19980001 RAL-799 1687 chrX 19992420 19992431 chrX 19992495 19992506 6 75 2.5 6.5 4.5 1.1 86 chrX 19992420 intergenic not near genes chrX 19992463 intergenic not near genes chrX 19992506 intergenic not near genes chrX_6_19990001 chrX_19990001 RAL-799 1688 chrX 20052787 20052811 chrX 20052871 20052890 8 83 2.5 0.0 1.2 3.6 103 chrX 20052787 intron Dop2R - chrX 20052838 intron Dop2R - chrX 20052890 intron Dop2R - chrX_8_20050001 chrX_20050001 RAL-799 1689 chrX 20082751 20082778 chrX 20082833 20082861 9 82 3.5 0.0 1.8 3.2 110 chrX 20082751 intergenic not near genes chrX 20082806 intergenic not near genes chrX 20082861 intergenic not near genes chrX_9_20080001 chrX_20080001 RAL-799 1690 chrX 20105195 20105230 chrX 20105298 20105333 19 103 38.5 40.5 39.5 0.5 138 chrX 20105195 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105333 intergenic not near genes chrX_19_20105001 chrX_20105001 RAL-799 1691 chrX 20150383 20150395 chrX 20150471 20150483 8 88 0.5 3.5 2.0 2.7 100 chrX 20150383 intron CG9572 + chrX 20150433 intron CG9572 + chrX 20150483 intron CG9572 + chrX_8_20150001 chrX_20150001 RAL-799 1692 chrX 20359144 20359158 chrX 20359218 20359234 4 76 4.0 4.5 4.2 0.8 90 chrX 20359144 intergenic not near genes chrX 20359189 intergenic not near genes chrX 20359234 intergenic not near genes chrX_4_20355001 chrX_20355001 RAL-799 1693 chrX 20369319 20369337 chrX 20369403 20369421 7 84 1.0 1.5 1.2 3.2 102 chrX 20369319 intergenic not near genes chrX 20369370 intergenic not near genes chrX 20369421 intergenic not near genes chrX_7_20365001 chrX_20365001 RAL-799 1694 chrX 20377325 20377349 chrX 20378792 20378816 hobo 12 1466 3.0 4.0 3.5 2.7 1491 chrX 20377325 intergenic not near genes chrX 20378070 intergenic not near genes chrX 20378816 intergenic not near genes chrX_12_20375001 chrX_20375001 RAL-799 1695 chrX 20426177 20426202 chrX 20428373 20428397 4 2196 25.5 24.0 24.8 0.2 2220 chrX 20426177 exon cactin + chrX 20427287 intergenic CG11710 -,CG15456 - chrX 20428397 exon CG11710 - chrX_4_20425001 chrX_20425001 RAL-799 1696 chrX 20504125 20504158 chrX 20505646 20505679 transib2 6 1521 0.5 3.0 1.8 2.1 1554 chrX 20504125 intron RhoGAP19D - chrX 20504902 intron RhoGAP19D - chrX 20505679 intron RhoGAP19D - chrX_6_20500001 chrX_20500001 RAL-799 1697 chrX 20528599 20528631 chrX 20528947 20528979 7 347 2.0 0.5 1.2 3.2 380 chrX 20528599 intergenic not near genes chrX 20528789 intergenic not near genes chrX 20528979 intergenic not near genes chrX_7_20525001 chrX_20525001 RAL-799 1698 chrX 20583731 20583755 chrX 20583901 20583926 5 170 0.5 0.0 0.2 4.2 195 chrX 20583731 intergenic not near genes chrX 20583828 intergenic not near genes chrX 20583926 intergenic not near genes chrX_5_20580001 chrX_20580001 RAL-799 1699 chrX 20836728 20836756 chrX 20844329 20844329 roo 6 7595 1.5 3.5 2.5 1.7 7601 chrX 20836728 intron shakB - chrX 20840528 intron shakB - chrX 20844329 intron shakB - chrX_6_20840001 chrX_20840001 RAL-799 1700 chrX 20915056 20915061 chrX 20915226 20915232 4 171 1.5 3.0 2.2 1.2 176 chrX 20915056 intron shakB - chrX 20915144 intron shakB - chrX 20915232 intron shakB - chrX_4_20915001 chrX_20915001 RAL-799 1701 chrX 20940721 20940756 chrX 20942190 20942225 hobo 11 1469 1.5 4.5 3.0 2.8 1504 chrX 20940721 intergenic not near genes chrX 20941473 intergenic not near genes chrX 20942225 intergenic not near genes chrX_11_20940001 chrX_20940001 RAL-799 1702 chrX 20981038 20981060 chrX 20981140 20981163 7 103 0.5 1.5 1.0 3.5 125 chrX 20981038 intergenic not near genes chrX 20981100 intergenic not near genes chrX 20981163 intergenic not near genes chrX_7_20980001 chrX_20980001 RAL-799 1703 chrX 21076331 21076351 chrX 21076410 21076430 4 79 1.0 0.0 0.5 2.7 99 chrX 21076331 intron bves + chrX 21076380 intron bves + chrX 21076430 intron bves + chrX_4_21075001 chrX_21075001 RAL-799 1704 chrX 21077604 21077630 chrX 21077692 21077699 5 85 0.5 0.5 0.5 3.3 95 chrX 21077604 intron bves + chrX 21077652 intron bves + chrX 21077699 intron bves + chrX_5_21075001 chrX_21075001 RAL-799 1705 chrX 21328116 21328136 chrX 21328227 21328247 4 110 3.0 0.5 1.8 1.4 131 chrX 21328116 3` UTR CG1486 + chrX 21328182 intergenic CG1486 +,tty - chrX 21328247 intergenic CG1486 +,tty - chrX_4_21325001 chrX_21325001 RAL-799 1706 chrX 21334357 21334369 chrX 21334462 21334474 4 105 2.5 2.5 2.5 1.1 117 chrX 21334357 intron tty - chrX 21334416 intron tty - chrX 21334474 intron tty - chrX_4_21330001 chrX_21330001 RAL-799 1707 chrX 21358079 21358094 chrX 21358159 21358169 5 79 3.5 3.0 3.2 1.2 90 chrX 21358079 intergenic sol +,Sep1 + chrX 21358124 intergenic Sep1 +,sol + chrX 21358169 intergenic Sep1 +,sol + chrX_5_21355001 chrX_21355001 RAL-799 1708 chrX 21410493 21410500 chrX 21410575 21410582 4 82 1.5 0.0 0.8 2.2 89 chrX 21410493 3` UTR CR45003 - chrX 21410538 3` UTR CR45003 - chrX 21410582 intergenic CR45003 - chrX_4_21410001 chrX_21410001 RAL-799 1709 chrX 21428338 21428367 chrX 21428528 21428541 6 187 2.0 1.0 1.5 2.4 203 chrX 21428338 intron CG42343 - chrX 21428440 intron CG42343 - chrX 21428541 intron CG42343 - chrX_6_21425001 chrX_21425001 RAL-799 1710 chrX 21458692 21458719 chrX 21464127 21464155 Ivk 9 5436 2.5 3.0 2.8 2.4 5463 chrX 21458692 intergenic not near genes chrX 21461424 intergenic not near genes chrX 21464155 intergenic not near genes chrX_9_21460001 chrX_21460001 RAL-799 1711 chrX 21516990 21517020 chrX 21517068 21517099 10 78 2.5 5.0 3.8 2.1 109 chrX 21516990 intron CR45082 - chrX 21517044 intron CR45082 - chrX 21517099 intron CR45082 - chrX_10_21515001 chrX_21515001 RAL-799 1712 chrX 21565413 21565445 chrX 21565491 21565523 6 78 0.0 1.0 0.5 4.0 110 chrX 21565413 intergenic not near genes chrX 21565468 intergenic not near genes chrX 21565523 intergenic not near genes chrX_6_21565001 chrX_21565001 RAL-799 1713 chrX 21668259 21668290 chrX 21668344 21668375 7 85 5.5 7.0 6.2 1.0 116 chrX 21668259 intergenic not near genes chrX 21668317 intergenic not near genes chrX 21668375 intergenic not near genes chrX_7_21665001 chrX_21665001 RAL-799 1714 chrX 22661978 22661989 chrX 22662077 22662088 6 99 0.0 1.5 0.8 3.3 110 chrX 22661978 intron CR44997 + chrX 22662033 intron CR44997 + chrX 22662088 intron CR44997 + chrX_6_22660001 chrX_22660001 RAL-799 1715 chrX 22697498 22697522 chrX 22701795 22701819 Juan 7 4297 4.5 3.5 4.0 1.4 4321 chrX 22697498 intron CR44997 + chrX 22699658 intron CR44997 + chrX 22701819 intron CR44997 + chrX_7_22695001 chrX_22695001 RAL-799 1716 chrX 22771504 22771539 chrX 22774795 22774827 297 9 3290 0.5 2.5 1.5 3.6 3323 chrX 22771504 intron CR44997 + chrX 22773166 intron CR44997 + chrX 22774827 intron CR44997 + chrX_9_22770001 chrX_22770001 RAL-799 1717 chrX 22784077 22784099 chrX 22784160 22784181 6 83 1.0 0.5 0.8 3.3 104 chrX 22784077 intron CR44997 + chrX 22784129 intron CR44997 + chrX 22784181 intron CR44997 + chrX_6_22780001 chrX_22780001 RAL-799 1718 chrX 22824416 22824446 chrX 22824549 22824579 4 133 1.0 2.0 1.5 1.6 163 chrX 22824416 3` UTR fog - chrX 22824498 3` UTR fog - chrX 22824579 3` UTR fog - chrX_4_22820001 chrX_22820001 RAL-799 1719 chrX 22870880 22870899 chrX 22870971 22870990 5 90 0.0 2.5 1.2 2.3 110 chrX 22870880 intron,3` UTR CG42346 +,CR43656 - chrX 22870935 intron,3` UTR CG42346 +,CR43656 - chrX 22870990 intron,3` UTR CG42346 +,CR43656 - chrX_5_22870001 chrX_22870001 RAL-799 1720 chrX 22895727 22895760 chrX 22895842 22895874 9 117 1.5 4.0 2.8 2.4 147 chrX 22895727 intergenic not near genes chrX 22895800 intergenic not near genes chrX 22895874 intergenic not near genes chrX_9_22895001 chrX_22895001 RAL-799 1721 chrX 22967392 22967511 chrX 23154543 23154688 diver 4 187164 4.5 5.5 5.0 0.7 187296 chrX 22967392 intergenic not near genes chrX 23061040 intergenic not near genes chrX 23154688 intergenic not near genes chrX_4_23060001 chrX_23060001 RAL-799 1722 chrX 22996306 22996332 chrX 23003540 23003565 roo 7 7234 4.5 2.5 3.5 1.6 7259 chrX 22996306 intron,intron stnA -,stnB - chrX 22999936 intron,intron stnA -,stnB - chrX 23003565 intron,intron stnA -,stnB - chrX_7_22995001 chrX_22995001 RAL-799 1723 chrY 975598 975809 chrY 975715 975916 5 157 108.0 96.5 102.2 0.0 318 chrY 975598 intergenic not near genes chrY 975757 intergenic not near genes chrY 975916 intergenic not near genes chrY_5_975001 chrY_975001 RAL-799