SV#	Chr_5p	Chr_coord_5p_start	Chr_coord_5p_end	Chr_3p	Chr_coord_3p_start	Chr_coord_3p_end	repName	Reads_collapsed	avg_del_len	RefGen_3prime	Refgen_5prime	RefGen_Avg	Coverage_Ratio	size	Chr_5p	Chr_coord_5p	classification_5p	comment_5p	Chr_mid	Chr_coord_mid	classification_mid	comment_mid	Chr_3p	Chr_coord_3p	classification_3p	comment_3p	depletion_code	loci_code	libname
2	chr2L	47442	47463	chr2L	52566	52588	jockey	7	5124	7.5	6.0	6.8	0.9	5146	chr2L	47442	intron	Cda5 -	chr2L	50015	intron	Cda5 -	chr2L	52588	intron	Cda5 -	chr2L_7_50001	chr2L_50001	RAL-790
3	chr2L	47466	47481	chr2L	52561	52606	jockey	6	5110	5.0	4.5	4.8	1.0	5140	chr2L	47466	intron	Cda5 -	chr2L	50036	intron	Cda5 -	chr2L	52606	intron	Cda5 -	chr2L_6_50001	chr2L_50001	RAL-790
10	chr2L	347884	347913	chr2L	355386	355432	blood	5	7515	5.5	4.0	4.8	0.9	7548	chr2L	347884	3` UTR	Plc21C +	chr2L	351658	intron	Plc21C +	chr2L	355432	3` UTR	Plc21C +	chr2L_5_350001	chr2L_350001	RAL-790
14	chr2L	686922	686942	chr2L	695958	696002	roo	4	9046	2.5	3.0	2.8	1.1	9080	chr2L	686922	intron	ds -	chr2L	691462	intron	ds -	chr2L	696002	intron	ds -	chr2L_4_690001	chr2L_690001	RAL-790
25	chr2L	976866	976910	chr2L	984522	984560	roo	10	7652	2.5	5.0	3.8	2.1	7694	chr2L	976866	intergenic	not near genes	chr2L	980713	intergenic	not near genes	chr2L	984560	intergenic	not near genes	chr2L_10_980001	chr2L_980001	RAL-790
26	chr2L	996706	996748	chr2L	1005821	1005863	roo	4	9115	0.0	3.0	1.5	1.6	9157	chr2L	996706	intergenic	not near genes	chr2L	1001284	intergenic	not near genes	chr2L	1005863	intergenic	not near genes	chr2L_4_1000001	chr2L_1000001	RAL-790
31	chr2L	1220110	1220159	chr2L	1227596	1227640	blood	11	7480	7.5	6.0	6.8	1.4	7530	chr2L	1220110	intron	CG42329 +	chr2L	1223875	intron	CG42329 +	chr2L	1227640	intron	CG42329 +	chr2L_11_1220001	chr2L_1220001	RAL-790
36	chr2L	1570676	1570717	chr2L	1573568	1573599	F-element	7	2890	1.0	0.5	0.8	3.9	2923	chr2L	1570676	intron	haf +	chr2L	1572138	intron	haf +	chr2L	1573599	intron	haf +	chr2L_7_1570001	chr2L_1570001	RAL-790
41	chr2L	1678955	1679007	chr2L	1686440	1686492	blood	12	7484	1.0	4.0	2.5	3.4	7537	chr2L	1678955	intron	chinmo +	chr2L	1682724	intron	chinmo +	chr2L	1686492	intron	chinmo +	chr2L_12_1680001	chr2L_1680001	RAL-790
42	chr2L	1711335	1711376	chr2L	1711679	1711720	mdg3	6	338	3.5	3.0	3.2	1.4	385	chr2L	1711335	3` UTR,3` UTR	mRpL48 +,frtz -	chr2L	1711528	3` UTR	frtz -	chr2L	1711720	3` UTR	frtz -	chr2L_6_1710001	chr2L_1710001	RAL-790
50	chr2L	2100376	2100388	chr2L	2109540	2109540	roo	4	9162	3.5	3.0	3.2	1.0	9164	chr2L	2100376	intron	dpr3 -	chr2L	2104958	intron	dpr3 -	chr2L	2109540	intron	dpr3 -	chr2L_4_2100001	chr2L_2100001	RAL-790
51	chr2L	2112139	2112146	chr2L	2119775	2119791	opus	5	7652	0.5	2.5	1.5	2.0	7652	chr2L	2112139	intergenic	not near genes	chr2L	2115965	intergenic	not near genes	chr2L	2119791	intergenic	not near genes	chr2L_5_2115001	chr2L_2115001	RAL-790
71	chr2L	2772605	2772629	chr2L	2779201	2779211	297	7	6598	3.5	5.5	4.5	1.3	6606	chr2L	2772605	3` UTR	Syt1 -	chr2L	2775908	intron	Syt1 -	chr2L	2779211	3` UTR	Syt1 -	chr2L_7_2775001	chr2L_2775001	RAL-790
74	chr2L	2933282	2933332	chr2L	2935479	2935529	pogo	9	2192	3.0	1.5	2.2	2.8	2247	chr2L	2933282	intron	lilli +	chr2L	2934406	intron	lilli +	chr2L	2935529	intron	lilli +	chr2L_9_2930001	chr2L_2930001	RAL-790
76	chr2L	3073018	3073053	chr2L	3078241	3078276	copia	10	5223	5.0	2.5	3.8	2.1	5258	chr2L	3073018	intron	toc -	chr2L	3075647	intron	toc -	chr2L	3078276	intron	toc -	chr2L_10_3075001	chr2L_3075001	RAL-790
82	chr2L	3202721	3202771	chr2L	3210170	3210220	mdg1	24	7447	7.0	10.5	8.8	2.4	7499	chr2L	3202721	intergenic	not near genes	chr2L	3206470	intergenic	not near genes	chr2L	3210220	intergenic	CR45336 +	chr2L_24_3205001	chr2L_3205001	RAL-790
83	chr2L	3251482	3251524	chr2L	3259067	3259109	springer	11	7584	3.0	5.5	4.2	2.1	7627	chr2L	3251482	intergenic	not near genes	chr2L	3255296	intergenic	not near genes	chr2L	3259109	intergenic	not near genes	chr2L_11_3255001	chr2L_3255001	RAL-790
86	chr2L	3388581	3388629	chr2L	3388842	3388889	pogo	15	259	4.0	5.0	4.5	2.7	308	chr2L	3388581	intergenic	CG42460 -	chr2L	3388735	intergenic	CG42460 -	chr2L	3388889	intergenic	CG42460 -,CR44791 +	chr2L_15_3385001	chr2L_3385001	RAL-790
95	chr2L	4066034	4066054	chr2L	4068879	4068899	Juan	4	2840	2.5	3.0	2.8	1.1	2865	chr2L	4066034	intron	ed +	chr2L	4067466	intron	ed +	chr2L	4068899	intron	ed +	chr2L_4_4065001	chr2L_4065001	RAL-790
99	chr2L	4601687	4601735	chr2L	4609148	4609196	mdg1	10	7457	6.0	4.0	5.0	1.7	7509	chr2L	4601687	intron	dp -	chr2L	4605442	intron	dp -	chr2L	4609196	intron	dp -	chr2L_10_4605001	chr2L_4605001	RAL-790
101	chr2L	4661827	4661857	chr2L	4669427	4669456	opus	8	7598	1.0	4.5	2.8	2.1	7629	chr2L	4661827	intergenic	not near genes	chr2L	4665642	intergenic	not near genes	chr2L	4669456	intergenic	not near genes	chr2L_8_4665001	chr2L_4665001	RAL-790
104	chr2L	4918151	4918199	chr2L	4923243	4923257	jockey	15	5088	7.0	8.0	7.5	1.8	5106	chr2L	4918151	intron	hoe1 -	chr2L	4920704	intron	hoe1 -	chr2L	4923257	intron	hoe1 -	chr2L_15_4920001	chr2L_4920001	RAL-790
106	chr2L	4953499	4953539	chr2L	4953760	4953780	pogo	7	256	3.0	4.0	3.5	1.6	281	chr2L	4953499	intergenic	Jon25Bii -	chr2L	4953640	intergenic	not near genes	chr2L	4953780	intergenic	Jon25Bi -	chr2L_7_4950001	chr2L_4950001	RAL-790
116	chr2L	5342749	5342792	chr2L	5345149	5345192	Doc	7	2399	3.5	2.0	2.8	1.8	2443	chr2L	5342749	intergenic	not near genes	chr2L	5343970	intergenic	not near genes	chr2L	5345192	intergenic	not near genes	chr2L_7_5340001	chr2L_5340001	RAL-790
129	chr2L	5827707	5827737	chr2L	5836718	5836765	roo	6	9020	5.0	2.0	3.5	1.3	9058	chr2L	5827707	intron	TrissinR +	chr2L	5832236	intron	TrissinR +	chr2L	5836765	intron	TrissinR +	chr2L_6_5830001	chr2L_5830001	RAL-790
144	chr2L	6279635	6279654	chr2L	6279719	6279753	INE-1	12	98	5.5	0.5	3.0	3.0	118	chr2L	6279635	intron	Ddr +	chr2L	6279694	intron	Ddr +	chr2L	6279753	intron	Ddr +	chr2L_12_6275001	chr2L_6275001	RAL-790
146	chr2L	6363141	6363182	chr2L	6366087	6366098	Burdock	12	2942	2.5	1.0	1.8	4.3	2957	chr2L	6363141	intergenic	not near genes	chr2L	6364620	intergenic	not near genes	chr2L	6366098	intergenic	not near genes	chr2L_12_6360001	chr2L_6360001	RAL-790
147	chr2L	6426838	6426884	chr2L	6445118	6445139	roo	17	18277	5.5	3.0	4.2	3.3	18301	chr2L	6426838	3` UTR	CG9527 -	chr2L	6435988	intron	CG9527 -	chr2L	6445139	exon	CG9527 -	chr2L_17_6435001	chr2L_6435001	RAL-790
170	chr2L	7343326	7343356	chr2L	7350439	7350491	roo	5	7124	2.0	2.5	2.2	1.6	7165	chr2L	7343326	intron	Wnt6 +	chr2L	7346908	intron	Wnt6 +	chr2L	7350491	intron	Wnt6 +	chr2L_5_7345001	chr2L_7345001	RAL-790
188	chr2L	7959025	7959073	chr2L	7960456	7960506	pogo	10	1430	4.5	1.5	3.0	2.5	1481	chr2L	7959025	intron	Snoo -	chr2L	7959766	intron	Snoo -	chr2L	7960506	intron	Snoo -	chr2L_10_7955001	chr2L_7955001	RAL-790
191	chr2L	8018821	8018829	chr2L	8023611	8023633	Doc	5	4801	0.0	3.5	1.8	1.8	4812	chr2L	8018821	intron	Tg +	chr2L	8021227	intron	Tg +	chr2L	8023633	intron	Tg +	chr2L_5_8020001	chr2L_8020001	RAL-790
200	chr2L	8452412	8452451	chr2L	8461603	8461642	roo	20	9189	3.5	5.5	4.5	3.6	9230	chr2L	8452412	intron	fu12 -	chr2L	8457027	intron	fu12 -	chr2L	8461642	intron	fu12 -	chr2L_20_8455001	chr2L_8455001	RAL-790
203	chr2L	8594458	8594491	chr2L	8601532	8601560	297	5	7073	2.0	2.5	2.2	1.6	7102	chr2L	8594458	intron,3` UTR	Sema-1a +,CR43855 -	chr2L	8598009	intron	Sema-1a +	chr2L	8601560	intron	Sema-1a +	chr2L_5_8595001	chr2L_8595001	RAL-790
207	chr2L	8723097	8723146	chr2L	8731494	8731536	Tirant	13	8394	1.5	3.5	2.5	3.7	8439	chr2L	8723097	intron	raw -	chr2L	8727316	intron	raw -	chr2L	8731536	intron	raw -	chr2L_13_8725001	chr2L_8725001	RAL-790
215	chr2L	9000272	9000308	chr2L	9007791	9007838	roo	12	7526	3.0	2.0	2.5	3.4	7566	chr2L	9000272	intergenic	Try29F +	chr2L	9004055	intergenic	not near genes	chr2L	9007838	intergenic	not near genes	chr2L_12_9000001	chr2L_9000001	RAL-790
225	chr2L	9217979	9217983	chr2L	9222785	9222786	Doc	4	4805	5.5	0.0	2.8	1.1	4807	chr2L	9217979	intron	tai +	chr2L	9220382	intron	tai +	chr2L	9222786	intron	tai +	chr2L_4_9220001	chr2L_9220001	RAL-790
234	chr2L	9393493	9393524	chr2L	9396469	9396511	jockey	8	2985	0.5	3.5	2.0	2.7	3018	chr2L	9393493	intron	Shawl -	chr2L	9395002	intron	Shawl -	chr2L	9396511	intron	Shawl -	chr2L_8_9390001	chr2L_9390001	RAL-790
247	chr2L	9973711	9973759	chr2L	9980846	9980898	HMS-Beagle	15	7130	3.5	3.5	3.5	3.3	7187	chr2L	9973711	intergenic	not near genes	chr2L	9977304	intergenic	not near genes	chr2L	9980898	intergenic	not near genes	chr2L_15_9975001	chr2L_9975001	RAL-790
251	chr2L	10156303	10156353	chr2L	10163793	10163838	blood	11	7481	4.5	5.0	4.8	1.9	7535	chr2L	10156303	intron,3` UTR	CG44153 -,CG4839 +	chr2L	10160070	intron	CG44153 -	chr2L	10163838	intron	CG44153 -	chr2L_11_10160001	chr2L_10160001	RAL-790
266	chr2L	10592822	10592865	chr2L	10600504	10600547	opus	12	7682	1.5	4.0	2.8	3.2	7725	chr2L	10592822	intron	Trim9 +	chr2L	10596684	intron	Trim9 +	chr2L	10600547	intron	Trim9 +	chr2L_12_10595001	chr2L_10595001	RAL-790
278	chr2L	10946939	10946968	chr2L	10956169	10956203	roo	5	9232	1.0	4.5	2.8	1.3	9264	chr2L	10946939	intron	dpr2 -	chr2L	10951571	intron	dpr2 -	chr2L	10956203	intron	dpr2 -	chr2L_5_10950001	chr2L_10950001	RAL-790
291	chr2L	11540584	11540616	chr2L	11548006	11548038	Tabor	10	7422	5.5	5.5	5.5	1.5	7454	chr2L	11540584	intergenic	not near genes	chr2L	11544311	intergenic	not near genes	chr2L	11548038	intergenic	not near genes	chr2L_10_11540001	chr2L_11540001	RAL-790
293	chr2L	11563635	11563670	chr2L	11568859	11568888	copia	11	5222	2.0	5.5	3.8	2.3	5253	chr2L	11563635	intergenic	not near genes	chr2L	11566262	intergenic	not near genes	chr2L	11568888	intergenic	not near genes	chr2L_11_11565001	chr2L_11565001	RAL-790
298	chr2L	11713490	11713539	chr2L	11720975	11721027	blood	8	7482	2.0	2.0	2.0	2.7	7537	chr2L	11713490	intergenic	not near genes	chr2L	11717258	intergenic	not near genes	chr2L	11721027	intergenic	CR44143 +	chr2L_8_11715001	chr2L_11715001	RAL-790
307	chr2L	12067336	12067347	chr2L	12074408	12074419	297	8	7072	0.0	2.5	1.2	3.6	7083	chr2L	12067336	intergenic	not near genes	chr2L	12070878	intergenic	not near genes	chr2L	12074419	intergenic	not near genes	chr2L_8_12070001	chr2L_12070001	RAL-790
324	chr2L	12728906	12728947	chr2L	12729169	12729203	pogo	9	256	2.0	1.0	1.5	3.6	297	chr2L	12728906	intron	MRP +	chr2L	12729054	intron	MRP +	chr2L	12729203	exon	MRP +	chr2L_9_12725001	chr2L_12725001	RAL-790
325	chr2L	12731039	12731090	chr2L	12735826	12735877	F-element	9	4785	2.5	3.0	2.8	2.4	4838	chr2L	12731039	intron	MRP +	chr2L	12733458	intron	MRP +	chr2L	12735877	intron	MRP +	chr2L_9_12730001	chr2L_12730001	RAL-790
326	chr2L	12739156	12739197	chr2L	12743957	12743998	Doc	13	4799	1.5	5.0	3.2	3.1	4842	chr2L	12739156	exon	MRP +	chr2L	12741577	intron	MRP +	chr2L	12743998	exon	MRP +	chr2L_13_12740001	chr2L_12740001	RAL-790
328	chr2L	12763809	12763868	chr2L	12764039	12764088	BS	6	224	0.5	0.5	0.5	4.0	279	chr2L	12763809	intergenic	not near genes	chr2L	12763948	intergenic	not near genes	chr2L	12764088	intergenic	not near genes	chr2L_6_12760001	chr2L_12760001	RAL-790
329	chr2L	12781782	12781803	chr2L	12789245	12789266	Quasimodo	11	7462	5.5	1.5	3.5	2.4	7484	chr2L	12781782	intergenic	not near genes	chr2L	12785524	intergenic	not near genes	chr2L	12789266	intergenic	not near genes	chr2L_11_12785001	chr2L_12785001	RAL-790
330	chr2L	12791589	12791628	chr2L	12795284	12795323	F-element	14	3689	3.5	10.0	6.8	1.8	3734	chr2L	12791589	intergenic	not near genes	chr2L	12793456	intergenic	not near genes	chr2L	12795323	intergenic	not near genes	chr2L_14_12790001	chr2L_12790001	RAL-790
333	chr2L	12894001	12894049	chr2L	12895487	12895530	hobo	5	1480	3.5	4.0	3.8	1.0	1529	chr2L	12894001	intergenic	not near genes	chr2L	12894766	intergenic	not near genes	chr2L	12895530	intergenic	not near genes	chr2L_5_12890001	chr2L_12890001	RAL-790
335	chr2L	12933833	12933879	chr2L	12941318	12941366	blood	18	7483	7.0	2.5	4.8	3.1	7533	chr2L	12933833	intergenic	not near genes	chr2L	12937600	intergenic	not near genes	chr2L	12941366	intergenic	not near genes	chr2L_18_12935001	chr2L_12935001	RAL-790
338	chr2L	13036226	13036240	chr2L	13036488	13036502	X-element	6	261	9.5	4.0	6.8	0.8	276	chr2L	13036226	intron	CG9932 -	chr2L	13036364	intron	CG9932 -	chr2L	13036502	intron	CG9932 -	chr2L_6_13035001	chr2L_13035001	RAL-790
339	chr2L	13036242	13036268	chr2L	13036487	13036530	X-element	9	260	1.5	4.0	2.8	2.4	288	chr2L	13036242	intron	CG9932 -	chr2L	13036386	intron	CG9932 -	chr2L	13036530	intron	CG9932 -	chr2L_9_13035001	chr2L_13035001	RAL-790
344	chr2L	13405658	13405671	chr2L	13410457	13410473	Doc	8	4812	1.0	5.5	3.2	1.9	4815	chr2L	13405658	exon	CG7110 +	chr2L	13408066	intron	CG7110 +	chr2L	13410473	intron	CG7110 +	chr2L_8_13405001	chr2L_13405001	RAL-790
345	chr2L	13449442	13449494	chr2L	13456898	13456944	Quasimodo	12	7453	2.0	4.5	3.2	2.9	7502	chr2L	13449442	intron,5` UTR	CG42784 +,Hsp60D -	chr2L	13453193	intron	CG42784 +	chr2L	13456944	intron	CG42784 +	chr2L_12_13450001	chr2L_13450001	RAL-790
346	chr2L	13481437	13481469	chr2L	13482062	13482096	jockey	9	626	3.0	3.0	3.0	2.2	659	chr2L	13481437	intron	CG42784 +	chr2L	13481766	intron	CG42784 +	chr2L	13482096	intron	CG42784 +	chr2L_9_13480001	chr2L_13480001	RAL-790
348	chr2L	13522267	13522289	chr2L	13527593	13527614	Transpac	5	5326	3.5	6.0	4.8	0.9	5347	chr2L	13522267	intron	B4 -	chr2L	13524940	intron	B4 -	chr2L	13527614	intron	B4 -	chr2L_5_13520001	chr2L_13520001	RAL-790
349	chr2L	13560392	13560420	chr2L	13565230	13565259	F-element	6	4836	6.0	0.5	3.2	1.4	4867	chr2L	13560392	intron	kuz +	chr2L	13562826	intron	kuz +	chr2L	13565259	intron	kuz +	chr2L_6_13560001	chr2L_13560001	RAL-790
358	chr2L	13761801	13761825	chr2L	13762920	13762944	Doc	6	1121	7.5	5.5	6.5	0.8	1143	chr2L	13761801	intron	TM9SF4 +	chr2L	13762372	intron	TM9SF4 +	chr2L	13762944	intron	TM9SF4 +	chr2L_6_13760001	chr2L_13760001	RAL-790
359	chr2L	13853070	13853109	chr2L	13862238	13862278	roo	9	9167	3.0	1.0	2.0	3.0	9208	chr2L	13853070	intron	CenG1A +	chr2L	13857674	intron	CenG1A +	chr2L	13862278	intron	CenG1A +	chr2L_9_13855001	chr2L_13855001	RAL-790
373	chr2L	14465568	14465618	chr2L	14469051	14469115	hopper2	5	3494	3.5	0.0	1.8	1.8	3547	chr2L	14465568	intergenic	not near genes	chr2L	14467342	intergenic	not near genes	chr2L	14469115	intergenic	not near genes	chr2L_5_14465001	chr2L_14465001	RAL-790
377	chr2L	14642563	14642577	chr2L	14651746	14651757	roo	5	9182	6.5	5.0	5.8	0.7	9194	chr2L	14642563	intron	osp -	chr2L	14647160	intron	osp -	chr2L	14651757	intron	osp -	chr2L_5_14645001	chr2L_14645001	RAL-790
384	chr2L	14803859	14803908	chr2L	14809080	14809093	copia	11	5215	2.0	5.0	3.5	2.4	5234	chr2L	14803859	intergenic	not near genes	chr2L	14806476	intergenic	not near genes	chr2L	14809093	intergenic	not near genes	chr2L_11_14805001	chr2L_14805001	RAL-790
388	chr2L	14984385	14984404	chr2L	14992007	14992016	opus	4	7618	4.5	5.0	4.8	0.7	7631	chr2L	14984385	intron	mol -	chr2L	14988200	intron	mol -	chr2L	14992016	intron	mol -	chr2L_4_14985001	chr2L_14985001	RAL-790
402	chr2L	15446034	15446049	chr2L	15453523	15453538	blood	6	7488	12.5	5.0	8.8	0.6	7504	chr2L	15446034	intergenic	not near genes	chr2L	15449786	intergenic	not near genes	chr2L	15453538	intergenic	not near genes	chr2L_6_15445001	chr2L_15445001	RAL-790
403	chr2L	15446050	15446083	chr2L	15453521	15453558	blood	9	7485	6.5	4.5	5.5	1.4	7508	chr2L	15446050	intergenic	not near genes	chr2L	15449804	intergenic	not near genes	chr2L	15453558	intergenic	not near genes	chr2L_9_15445001	chr2L_15445001	RAL-790
410	chr2L	15586399	15586440	chr2L	15593467	15593512	297	8	7072	3.0	4.0	3.5	1.8	7113	chr2L	15586399	intergenic	not near genes	chr2L	15589956	intergenic	not near genes	chr2L	15593512	intergenic	not near genes	chr2L_8_15585001	chr2L_15585001	RAL-790
415	chr2L	15826875	15826888	chr2L	15829289	15829301	Tabor	8	2413	1.5	9.5	5.5	1.2	2426	chr2L	15826875	intergenic	not near genes	chr2L	15828088	intergenic	not near genes	chr2L	15829301	intergenic	not near genes	chr2L_8_15825001	chr2L_15825001	RAL-790
417	chr2L	15956015	15956060	chr2L	15957489	15957520	hobo	16	1476	1.5	5.0	3.2	3.8	1505	chr2L	15956015	intron	beat-Ib -	chr2L	15956768	intron	beat-Ib -	chr2L	15957520	intron	beat-Ib -	chr2L_16_15955001	chr2L_15955001	RAL-790
425	chr2L	16071771	16071771	chr2L	16217660	16217661	copia	10	145889	15.5	13.5	14.5	0.6	145890	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217661	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-790
427	chr2L	16141154	16141190	chr2L	16146381	16146417	copia	10	5226	2.0	2.5	2.2	3.1	5263	chr2L	16141154	intergenic	not near genes	chr2L	16143786	intergenic	not near genes	chr2L	16146417	intergenic	not near genes	chr2L_10_16140001	chr2L_16140001	RAL-790
429	chr2L	16153728	16153744	chr2L	16160816	16160832	297	4	7088	1.0	2.5	1.8	1.4	7104	chr2L	16153728	intergenic	not near genes	chr2L	16157280	intergenic	not near genes	chr2L	16160832	intergenic	not near genes	chr2L_4_16155001	chr2L_16155001	RAL-790
430	chr2L	16153745	16153762	chr2L	16160813	16160850	297	6	7082	1.0	1.5	1.2	2.7	7105	chr2L	16153745	intergenic	not near genes	chr2L	16157298	intergenic	not near genes	chr2L	16160850	intergenic	not near genes	chr2L_6_16155001	chr2L_16155001	RAL-790
432	chr2L	16071771	16071771	chr2L	16217660	16217660	copia	4	145889	15.5	13.5	14.5	0.3	145889	chr2L	16071771	intron	beat-Ia +	chr2L	16144716	intergenic	not near genes	chr2L	16217660	intergenic	not near genes	chr2L_4_16140001	chr2L_16140001	RAL-790
436	chr2L	16280256	16280282	chr2L	16281442	16281471	1360	5	1190	2.5	7.0	4.8	0.9	1215	chr2L	16280256	intron	crp -	chr2L	16280864	intron	crp -	chr2L	16281471	intron	crp -	chr2L_5_16280001	chr2L_16280001	RAL-790
442	chr2L	16511950	16511992	chr2L	16519082	16519126	HMS-Beagle	17	7133	4.5	1.5	3.0	4.2	7176	chr2L	16511950	intron	CG5953 -	chr2L	16515538	intron	CG5953 -	chr2L	16519126	intron	CG5953 -	chr2L_17_16515001	chr2L_16515001	RAL-790
449	chr2L	16852786	16852804	chr2L	16859948	16859966	Doc4-element	9	7161	9.0	8.5	8.8	0.9	7180	chr2L	16852786	intergenic	CG31810 -	chr2L	16856376	intron	CG31809 -	chr2L	16859966	intergenic	CG6012 -	chr2L_9_16855001	chr2L_16855001	RAL-790
454	chr2L	16958090	16958134	chr2L	16962898	16962942	Doc	14	4808	2.5	4.0	3.2	3.3	4852	chr2L	16958090	intergenic	not near genes	chr2L	16960516	intergenic	not near genes	chr2L	16962942	intergenic	not near genes	chr2L_14_16960001	chr2L_16960001	RAL-790
460	chr2L	17167550	17167584	chr2L	17167811	17167845	pogo	8	260	4.5	6.5	5.5	1.2	295	chr2L	17167550	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167698	intron,intron	CG34106 +,beat-IIIa +	chr2L	17167845	intron,intron	CG34106 +,beat-IIIa +	chr2L_8_17165001	chr2L_17165001	RAL-790
461	chr2L	17199144	17199158	chr2L	17200631	17200645	hobo	5	1487	3.5	3.5	3.5	1.1	1501	chr2L	17199144	intron	beat-IIIc -	chr2L	17199894	intron	beat-IIIc -	chr2L	17200645	intron	beat-IIIc -	chr2L_5_17195001	chr2L_17195001	RAL-790
463	chr2L	17273178	17273227	chr2L	17277981	17277985	F-element	6	4795	3.0	2.0	2.5	1.7	4807	chr2L	17273178	intergenic	not near genes	chr2L	17275582	intergenic	not near genes	chr2L	17277985	intergenic	not near genes	chr2L_6_17275001	chr2L_17275001	RAL-790
470	chr2L	17431990	17432049	chr2L	17432121	17432176	1360	6	127	0.0	5.0	2.5	1.7	186	chr2L	17431990	intron	Dif -	chr2L	17432083	intron	Dif -	chr2L	17432176	intron	Dif -	chr2L_6_17430001	chr2L_17430001	RAL-790
474	chr2L	17687498	17687521	chr2L	17692262	17692280	F-element	12	4764	2.0	2.5	2.2	3.8	4782	chr2L	17687498	intron	CadN -	chr2L	17689889	intron	CadN -	chr2L	17692280	intron	CadN -	chr2L_12_17685001	chr2L_17685001	RAL-790
475	chr2L	17727860	17727880	chr2L	17729347	17729348	hobo	4	1482	3.0	5.5	4.2	0.8	1488	chr2L	17727860	intron	CadN -	chr2L	17728604	intron	CadN -	chr2L	17729348	intron	CadN -	chr2L_4_17725001	chr2L_17725001	RAL-790
477	chr2L	17911944	17911982	chr2L	17914150	17914163	pogo	7	2202	2.5	7.5	5.0	1.2	2219	chr2L	17911944	intergenic	not near genes	chr2L	17913054	intergenic	not near genes	chr2L	17914163	intergenic	CG43271 -	chr2L_7_17910001	chr2L_17910001	RAL-790
479	chr2L	17951947	17951972	chr2L	17953414	17953449	hobo	12	1484	4.0	3.0	3.5	2.7	1502	chr2L	17951947	intergenic	CR44398 -,CR44397 -	chr2L	17952698	intergenic	not near genes	chr2L	17953449	intergenic	not near genes	chr2L_12_17950001	chr2L_17950001	RAL-790
488	chr2L	18408011	18408036	chr2L	18412813	18412815	Doc	10	4801	5.5	0.0	2.8	2.6	4804	chr2L	18408011	intergenic	not near genes	chr2L	18410413	intergenic	not near genes	chr2L	18412815	intergenic	not near genes	chr2L_10_18410001	chr2L_18410001	RAL-790
499	chr2L	19147301	19147402	chr2L	19154403	19154457	297	4	7066	0.5	2.5	1.5	1.6	7156	chr2L	19147301	intron	brat +	chr2L	19150879	intron	brat +	chr2L	19154457	intron	brat +	chr2L_4_19150001	chr2L_19150001	RAL-790
503	chr2L	19345011	19345049	chr2L	19357223	19357248	blood	11	12218	2.0	1.5	1.8	3.9	12237	chr2L	19345011	intron	dnt -	chr2L	19351130	intron	dnt -	chr2L	19357248	intron	dnt -	chr2L_11_19350001	chr2L_19350001	RAL-790
511	chr2L	19620082	19620124	chr2L	19621086	19621132	jockey	8	1007	3.0	3.0	3.0	2.0	1050	chr2L	19620082	intron	Lar +	chr2L	19620607	intron	Lar +	chr2L	19621132	intron	Lar +	chr2L_8_19620001	chr2L_19620001	RAL-790
512	chr2L	19652558	19652599	chr2L	19674005	19674041	opus	13	21450	6.5	6.0	6.2	1.8	21483	chr2L	19652558	intron	Lar +	chr2L	19663300	intron	Lar +	chr2L	19674041	intron	Lar +	chr2L_13_19660001	chr2L_19660001	RAL-790
513	chr2L	19703521	19703566	chr2L	19712677	19712722	roo	11	9154	4.5	3.5	4.0	2.2	9201	chr2L	19703521	intron	Lar +	chr2L	19708122	intron	Lar +	chr2L	19712722	intron	Lar +	chr2L_11_19705001	chr2L_19705001	RAL-790
517	chr2L	19762793	19762836	chr2L	19763053	19763093	pogo	17	259	3.5	2.5	3.0	4.2	300	chr2L	19762793	5` UTR	fbp -	chr2L	19762943	intron	fbp -	chr2L	19763093	intron	fbp -	chr2L_17_19760001	chr2L_19760001	RAL-790
524	chr2L	20005869	20005902	chr2L	20010964	20010998	flea	11	5096	5.5	5.5	5.5	1.7	5129	chr2L	20005869	intron	CG43861 -	chr2L	20008434	intron	CG43861 -	chr2L	20010998	intron	CG43861 -	chr2L_11_20005001	chr2L_20005001	RAL-790
532	chr2L	20272106	20272143	chr2L	20282837	20282874	copia	10	10730	5.5	9.5	7.5	1.2	10768	chr2L	20272106	intergenic	not near genes	chr2L	20277490	intergenic	not near genes	chr2L	20282874	intergenic	not near genes	chr2L_10_20275001	chr2L_20275001	RAL-790
533	chr2L	20303164	20303186	chr2L	20310637	20310674	blood	4	7482	0.5	6.0	3.2	1.0	7510	chr2L	20303164	intergenic	not near genes	chr2L	20306919	intergenic	not near genes	chr2L	20310674	intergenic	not near genes	chr2L_4_20305001	chr2L_20305001	RAL-790
535	chr2L	20372214	20372254	chr2L	20372471	20372515	pogo	23	258	5.0	4.0	4.5	4.2	301	chr2L	20372214	intergenic	Ugt37a1 -	chr2L	20372364	intergenic	Ugt37a1 -	chr2L	20372515	exon	Ugt37a1 -	chr2L_23_20370001	chr2L_20370001	RAL-790
541	chr2L	20576199	20576222	chr2L	20583687	20583709	blood	5	7488	8.0	7.0	7.5	0.6	7510	chr2L	20576199	intergenic	CR45347 +	chr2L	20579954	intergenic	not near genes	chr2L	20583709	3` UTR	CR44909 -	chr2L_5_20575001	chr2L_20575001	RAL-790
550	chr2L	20835799	20835839	chr2L	20836532	20836576	Quasimodo	12	732	3.5	2.5	3.0	3.0	777	chr2L	20835799	5` UTR	Oseg5 -	chr2L	20836188	intergenic	Oseg5 -,Spn38F -	chr2L	20836576	intergenic	Spn38F -	chr2L_12_20835001	chr2L_20835001	RAL-790
552	chr2L	20891516	20891542	chr2L	20896637	20896663	jockey	7	5121	1.5	2.5	2.0	2.3	5147	chr2L	20891516	intron,intron	CG43739 -,sky -	chr2L	20894090	intron,intron	CG43739 -,sky -	chr2L	20896663	intron,intron	CG43739 -,sky -	chr2L_7_20890001	chr2L_20890001	RAL-790
555	chr2L	21041148	21041155	chr2L	21049404	21049429	Tirant	4	8273	3.0	1.5	2.2	1.2	8281	chr2L	21041148	intron	CG42238 -	chr2L	21045288	intron	CG42238 -	chr2L	21049429	intron	CG42238 -	chr2L_4_21045001	chr2L_21045001	RAL-790
557	chr2L	21347531	21347579	chr2L	21355023	21355071	blood	11	7492	4.5	4.5	4.5	2.0	7540	chr2L	21347531	intron	Tsp39D +	chr2L	21351301	intron	Tsp39D +	chr2L	21355071	intron	Tsp39D +	chr2L_11_21350001	chr2L_21350001	RAL-790
558	chr2L	21691807	21691858	chr2L	21698297	21698349	Burdock	13	6487	2.5	1.5	2.0	4.3	6542	chr2L	21691807	intron	CG31619 +	chr2L	21695078	intron	CG31619 +	chr2L	21698349	intron	CG31619 +	chr2L_13_21695001	chr2L_21695001	RAL-790
559	chr2L	21751123	21751160	chr2L	21751897	21751925	INE-1	11	772	8.5	1.5	5.0	1.8	802	chr2L	21751123	intron	step -	chr2L	21751524	intron	step -	chr2L	21751925	intron	step -	chr2L_11_21750001	chr2L_21750001	RAL-790
566	chr2L	21981666	21981711	chr2L	21990850	21990896	roo	10	9179	3.5	6.0	4.8	1.7	9230	chr2L	21981666	exon	CG2528 -	chr2L	21986281	intron	CG2528 -	chr2L	21990896	exon	CG2528 -	chr2L_10_21985001	chr2L_21985001	RAL-790
573	chr2L	22581950	22582001	chr2L	22583759	22583810	S-element	14	1808	3.0	4.0	3.5	3.1	1860	chr2L	22581950	intron	CG17494 +	chr2L	22582880	intron	CG17494 +	chr2L	22583810	intron	CG17494 +	chr2L_14_22580001	chr2L_22580001	RAL-790
575	chr2L	22776408	22776451	chr2L	22778217	22778260	S-element	9	1804	4.0	4.5	4.2	1.7	1852	chr2L	22776408	intergenic	not near genes	chr2L	22777334	intergenic	not near genes	chr2L	22778260	intergenic	not near genes	chr2L_9_22775001	chr2L_22775001	RAL-790
578	chr2R	529315	529351	chr2R	537949	537961	Max-element	6	8637	3.5	5.5	4.5	1.1	8646	chr2R	529315	intron	CG40378 +	chr2R	533638	intron	CG40378 +	chr2R	537961	intron	CG40378 +	chr2R_6_530001	chr2R_530001	RAL-790
580	chr2R	1516585	1516601	chr2R	1521333	1521349	1731	13	4747	31.0	20.0	25.5	0.5	4764	chr2R	1516585	exon	Maf1 -	chr2R	1518967	intron	Maf1 -	chr2R	1521349	5` UTR	Maf1 -	chr2R_13_1515001	chr2R_1515001	RAL-790
581	chr2R	2498970	2499018	chr2R	2508137	2508172	roo	14	9166	5.5	2.5	4.0	2.8	9202	chr2R	2498970	intron	MFS17 -	chr2R	2503571	intron	MFS17 -	chr2R	2508172	intron	MFS17 -	chr2R_14_2500001	chr2R_2500001	RAL-790
583	chr2R	3532603	3532640	chr2R	3536066	3536103	Doc	9	3462	1.5	2.0	1.8	3.2	3500	chr2R	3532603	intergenic	not near genes	chr2R	3534353	intergenic	not near genes	chr2R	3536103	intergenic	not near genes	chr2R_9_3530001	chr2R_3530001	RAL-790
586	chr2R	4624626	4624670	chr2R	4626551	4626581	Bica	16	1922	4.5	3.5	4.0	3.2	1955	chr2R	4624626	intergenic	not near genes	chr2R	4625604	intergenic	not near genes	chr2R	4626581	intergenic	not near genes	chr2R_16_4625001	chr2R_4625001	RAL-790
591	chr2R	4838851	4838903	chr2R	4840394	4840440	transib2	8	1541	7.5	5.0	6.2	1.1	1589	chr2R	4838851	intergenic	not near genes	chr2R	4839646	intergenic	not near genes	chr2R	4840440	intergenic	not near genes	chr2R_8_4835001	chr2R_4835001	RAL-790
606	chr2R	5417979	5417991	chr2R	5420631	5420631	Burdock	5	2649	6.0	5.0	5.5	0.8	2652	chr2R	5417979	intron	laccase2 +	chr2R	5419305	intron	laccase2 +	chr2R	5420631	intron	laccase2 +	chr2R_5_5415001	chr2R_5415001	RAL-790
607	chr2R	5417996	5418027	chr2R	5420626	5420679	Burdock	9	2649	2.5	4.5	3.5	2.0	2683	chr2R	5417996	intron	laccase2 +	chr2R	5419338	intron	laccase2 +	chr2R	5420679	intron	laccase2 +	chr2R_9_5415001	chr2R_5415001	RAL-790
609	chr2R	5543198	5543213	chr2R	5547302	5547317	invader1	5	4103	0.0	13.0	6.5	0.7	4119	chr2R	5543198	intron	CG30438 +	chr2R	5545258	intron	CG30438 +	chr2R	5547317	intron	CG30438 +	chr2R_5_5545001	chr2R_5545001	RAL-790
616	chr2R	5869261	5869308	chr2R	5874357	5874378	flea	12	5088	6.0	4.0	5.0	2.0	5117	chr2R	5869261	intergenic	not near genes	chr2R	5871820	intergenic	not near genes	chr2R	5874378	intergenic	not near genes	chr2R_12_5870001	chr2R_5870001	RAL-790
618	chr2R	5902149	5902166	chr2R	5909714	5909724	17.6	6	7568	5.5	3.5	4.5	1.1	7575	chr2R	5902149	intron	CG43366 +	chr2R	5905936	intron	CG43366 +	chr2R	5909724	intron	CG43366 +	chr2R_6_5905001	chr2R_5905001	RAL-790
627	chr2R	6494510	6494553	chr2R	6499292	6499333	F-element	6	4781	0.5	2.5	1.5	2.4	4823	chr2R	6494510	intergenic	not near genes	chr2R	6496922	intergenic	not near genes	chr2R	6499333	intergenic	not near genes	chr2R_6_6495001	chr2R_6495001	RAL-790
630	chr2R	6579755	6579806	chr2R	6584861	6584901	flea	20	5105	5.0	2.5	3.8	4.2	5146	chr2R	6579755	intron	jing +	chr2R	6582328	intron	jing +	chr2R	6584901	intron	jing +	chr2R_20_6580001	chr2R_6580001	RAL-790
638	chr2R	6952148	6952185	chr2R	6959746	6959785	opus	15	7600	3.5	4.0	3.8	3.1	7637	chr2R	6952148	intron,intron,exon	mim -,CheB42c -,ppk25 +	chr2R	6955966	intron,intron	mim -,CheB42c -	chr2R	6959785	intron,intron	mim -,CheB42c -	chr2R_15_6955001	chr2R_6955001	RAL-790
651	chr2R	7196553	7196592	chr2R	7201348	7201387	F-element	4	4795	7.5	6.5	7.0	0.5	4834	chr2R	7196553	intron	pk +	chr2R	7198970	intron	pk +	chr2R	7201387	intron	pk +	chr2R_4_7195001	chr2R_7195001	RAL-790
652	chr2R	7209845	7209868	chr2R	7217595	7217649	roo	6	7770	0.0	0.5	0.2	5.0	7804	chr2R	7209845	intron	pk +	chr2R	7213747	intron	pk +	chr2R	7217649	intron	pk +	chr2R_6_7210001	chr2R_7210001	RAL-790
653	chr2R	7235812	7235834	chr2R	7240914	7240945	jockey	4	5107	5.0	1.5	3.2	1.0	5133	chr2R	7235812	intergenic	not near genes	chr2R	7238378	intergenic	not near genes	chr2R	7240945	intergenic	not near genes	chr2R_4_7235001	chr2R_7235001	RAL-790
656	chr2R	7434878	7434909	chr2R	7439199	7439230	Juan	7	4321	8.0	6.0	7.0	0.9	4352	chr2R	7434878	intergenic	so +	chr2R	7437054	intergenic	not near genes	chr2R	7439230	intergenic	not near genes	chr2R_7_7435001	chr2R_7435001	RAL-790
657	chr2R	7608392	7608447	chr2R	7613615	7613670	I-element	4	5223	3.5	0.0	1.8	1.4	5278	chr2R	7608392	intron	CG1358 -	chr2R	7611031	intron	CG1358 -	chr2R	7613670	intron	CG1358 -	chr2R_4_7610001	chr2R_7610001	RAL-790
662	chr2R	7815654	7815699	chr2R	7822143	7822188	Burdock	9	6486	8.0	2.5	5.2	1.5	6534	chr2R	7815654	intergenic	CG1882 +	chr2R	7818921	intergenic	not near genes	chr2R	7822188	3` UTR	cathD -	chr2R_9_7815001	chr2R_7815001	RAL-790
667	chr2R	8330844	8330892	chr2R	8331350	8331390	roo	18	505	3.5	6.5	5.0	3.0	546	chr2R	8330844	intron	pdm3 +	chr2R	8331117	intron	pdm3 +	chr2R	8331390	intron	pdm3 +	chr2R_18_8330001	chr2R_8330001	RAL-790
669	chr2R	8398210	8398241	chr2R	8403011	8403042	Doc	9	4798	2.0	3.0	2.5	2.6	4832	chr2R	8398210	intron	CG2121 -	chr2R	8400626	intron	CG2121 -	chr2R	8403042	intron	CG2121 -	chr2R_9_8400001	chr2R_8400001	RAL-790
680	chr2R	8722742	8722787	chr2R	8723003	8723018	pogo	9	250	3.5	1.5	2.5	2.6	276	chr2R	8722742	intron	CG14767 -	chr2R	8722880	intron	CG14767 -	chr2R	8723018	intron	CG14767 -	chr2R_9_8720001	chr2R_8720001	RAL-790
681	chr2R	8777929	8777935	chr2R	8784153	8784159	diver	4	6224	4.0	8.0	6.0	0.6	6230	chr2R	8777929	intergenic	not near genes	chr2R	8781044	intergenic	not near genes	chr2R	8784159	intergenic	not near genes	chr2R_4_8780001	chr2R_8780001	RAL-790
686	chr2R	9212684	9212719	chr2R	9213178	9213204	roo	9	496	1.0	2.0	1.5	3.6	520	chr2R	9212684	intergenic	CR45309 +	chr2R	9212944	intergenic	CR45309 +	chr2R	9213204	5` UTR	CR45309 +	chr2R_9_9210001	chr2R_9210001	RAL-790
688	chr2R	9480061	9480101	chr2R	9490612	9490652	roo	12	10550	3.5	4.0	3.8	2.5	10591	chr2R	9480061	intergenic	not near genes	chr2R	9485356	intergenic	not near genes	chr2R	9490652	intergenic	not near genes	chr2R_12_9485001	chr2R_9485001	RAL-790
693	chr2R	9726596	9726612	chr2R	9734167	9734183	17.6	6	7571	5.5	4.0	4.8	1.0	7587	chr2R	9726596	intron	sqa -	chr2R	9730390	intron	sqa -	chr2R	9734183	intron	sqa -	chr2R_6_9730001	chr2R_9730001	RAL-790
694	chr2R	9726615	9726639	chr2R	9734161	9734209	17.6	6	7567	3.5	3.5	3.5	1.3	7594	chr2R	9726615	intron	sqa -	chr2R	9730412	intron	sqa -	chr2R	9734209	intron	sqa -	chr2R_6_9730001	chr2R_9730001	RAL-790
695	chr2R	9871034	9871065	chr2R	9871528	9871541	roo	9	498	3.0	4.5	3.8	1.9	507	chr2R	9871034	intron	cbx -	chr2R	9871288	intron	cbx -	chr2R	9871541	intron,5` UTR	cbx -,CG18446 +	chr2R_9_9870001	chr2R_9870001	RAL-790
704	chr2R	10176864	10176907	chr2R	10186051	10186094	roo	10	9186	2.5	4.5	3.5	2.2	9230	chr2R	10176864	intron	KCNQ -	chr2R	10181479	intron	KCNQ -	chr2R	10186094	intron	KCNQ -	chr2R_10_10180001	chr2R_10180001	RAL-790
722	chr2R	10622334	10622354	chr2R	10637119	10637139	mdg1	4	14785	5.5	6.0	5.8	0.6	14805	chr2R	10622334	intron	CG11883 +	chr2R	10629736	intron	CG11883 +	chr2R	10637139	intron	CG11883 +	chr2R_4_10625001	chr2R_10625001	RAL-790
728	chr2R	10948040	10948055	chr2R	10955590	10955626	17.6	4	7563	0.0	3.5	1.8	1.4	7586	chr2R	10948040	intergenic	not near genes	chr2R	10951833	intergenic	not near genes	chr2R	10955626	intergenic	not near genes	chr2R_4_10950001	chr2R_10950001	RAL-790
730	chr2R	10979658	10979675	chr2R	10980150	10980157	297	5	488	1.5	1.0	1.2	2.3	499	chr2R	10979658	intergenic	not near genes	chr2R	10979908	intergenic	not near genes	chr2R	10980157	intergenic	not near genes	chr2R_5_10975001	chr2R_10975001	RAL-790
731	chr2R	11009796	11009847	chr2R	11018990	11019005	roo	9	9183	2.0	4.0	3.0	2.2	9209	chr2R	11009796	intron	luna -	chr2R	11014400	intron	luna -	chr2R	11019005	intron	luna -	chr2R_9_11010001	chr2R_11010001	RAL-790
732	chr2R	11134098	11134142	chr2R	11134359	11134401	pogo	11	261	3.5	4.5	4.0	2.2	303	chr2R	11134098	intergenic	not near genes	chr2R	11134250	intergenic	not near genes	chr2R	11134401	intergenic	not near genes	chr2R_11_11130001	chr2R_11130001	RAL-790
734	chr2R	11207803	11207847	chr2R	11208009	11208053	BS	14	208	4.0	3.0	3.5	3.1	250	chr2R	11207803	intron	shn +	chr2R	11207928	intron	shn +	chr2R	11208053	intron	shn +	chr2R_14_11205001	chr2R_11205001	RAL-790
739	chr2R	11415518	11415551	chr2R	11418682	11418714	opus	11	3164	4.0	8.5	6.2	1.5	3196	chr2R	11415518	intron	Drip -	chr2R	11417116	intron	Drip -	chr2R	11418714	intron	Drip -	chr2R_11_11415001	chr2R_11415001	RAL-790
741	chr2R	11472628	11472670	chr2R	11473845	11473887	pogo	11	1213	7.5	5.5	6.5	1.5	1259	chr2R	11472628	intergenic	not near genes	chr2R	11473258	intergenic	not near genes	chr2R	11473887	intergenic	not near genes	chr2R_11_11470001	chr2R_11470001	RAL-790
767	chr2R	12707509	12707549	chr2R	12715893	12715935	roo	16	8385	0.5	3.5	2.0	5.3	8426	chr2R	12707509	intron	CG42663 +	chr2R	12711722	intron	CG42663 +	chr2R	12715935	intron	CG42663 +	chr2R_16_12710001	chr2R_12710001	RAL-790
769	chr2R	12819442	12819466	chr2R	12824528	12824551	jockey	5	5090	1.5	2.5	2.0	1.7	5109	chr2R	12819442	intergenic	not near genes	chr2R	12821996	intergenic	not near genes	chr2R	12824551	intergenic	not near genes	chr2R_5_12820001	chr2R_12820001	RAL-790
775	chr2R	13136823	13136867	chr2R	13141641	13141674	Doc	9	4816	2.0	1.5	1.8	3.2	4851	chr2R	13136823	exon	Cap-G +	chr2R	13139248	intron	Cap-G +	chr2R	13141674	intron	Cap-G +	chr2R_9_13135001	chr2R_13135001	RAL-790
783	chr2R	13580483	13580524	chr2R	13580848	13580894	jockey	6	367	4.5	2.0	3.2	1.4	411	chr2R	13580483	3` UTR	CG6191 -	chr2R	13580688	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R	13580894	3` UTR,3` UTR	CG6191 -,CG45088 -	chr2R_6_13580001	chr2R_13580001	RAL-790
788	chr2R	13905583	13905629	chr2R	13907585	13907610	Rt1a	6	1985	0.0	1.5	0.8	3.3	2027	chr2R	13905583	intron	shot -	chr2R	13906596	intron	shot -	chr2R	13907610	intron	shot -	chr2R_6_13905001	chr2R_13905001	RAL-790
796	chr2R	14394214	14394221	chr2R	14399023	14399030	Doc	4	4809	8.0	2.5	5.2	0.6	4816	chr2R	14394214	intergenic	not near genes	chr2R	14396622	intergenic	not near genes	chr2R	14399030	intergenic	not near genes	chr2R_4_14395001	chr2R_14395001	RAL-790
798	chr2R	14467288	14467327	chr2R	14476465	14476505	roo	9	9176	2.5	3.5	3.0	2.2	9217	chr2R	14467288	intergenic	not near genes	chr2R	14471896	intergenic	not near genes	chr2R	14476505	5` UTR	CR44462 +	chr2R_9_14470001	chr2R_14470001	RAL-790
800	chr2R	14497374	14497418	chr2R	14498557	14498604	1360	5	1183	0.0	1.5	0.8	2.8	1230	chr2R	14497374	3` UTR	Cpsf160 -	chr2R	14497989	intron	Cpsf160 -	chr2R	14498604	3` UTR	Cpsf160 -	chr2R_5_14495001	chr2R_14495001	RAL-790
808	chr2R	14889190	14889220	chr2R	14897818	14897845	Max-element	5	8625	4.5	0.0	2.2	1.6	8655	chr2R	14889190	intergenic	Cyp6a8 -	chr2R	14893518	intergenic	not near genes	chr2R	14897845	intergenic	not near genes	chr2R_5_14890001	chr2R_14890001	RAL-790
817	chr2R	15004711	15004737	chr2R	15005058	15005086	jockey	5	348	3.5	6.0	4.8	0.9	375	chr2R	15004711	intergenic	not near genes	chr2R	15004898	intergenic	not near genes	chr2R	15005086	intergenic	not near genes	chr2R_5_15000001	chr2R_15000001	RAL-790
818	chr2R	15004738	15004759	chr2R	15005087	15005098	jockey	7	347	1.0	8.5	4.8	1.2	360	chr2R	15004738	intergenic	not near genes	chr2R	15004918	intergenic	not near genes	chr2R	15005098	intergenic	not near genes	chr2R_7_15000001	chr2R_15000001	RAL-790
819	chr2R	15015444	15015488	chr2R	15022888	15022932	mdg1	13	7440	2.0	6.0	4.0	2.6	7488	chr2R	15015444	intron	hbs +	chr2R	15019188	intron	hbs +	chr2R	15022932	intron	hbs +	chr2R_13_15015001	chr2R_15015001	RAL-790
821	chr2R	15084963	15085010	chr2R	15092032	15092044	297	13	7065	2.0	4.0	3.0	3.2	7081	chr2R	15084963	intergenic	not near genes	chr2R	15088504	intergenic	not near genes	chr2R	15092044	5` UTR	CR44457 +	chr2R_13_15085001	chr2R_15085001	RAL-790
823	chr2R	15119297	15119347	chr2R	15127798	15127848	Tirant	7	8498	5.5	2.5	4.0	1.4	8551	chr2R	15119297	intron	chn +	chr2R	15123572	intron	chn +	chr2R	15127848	intron	chn +	chr2R_7_15120001	chr2R_15120001	RAL-790
831	chr2R	15372348	15372354	chr2R	15373679	15373685	1360	4	1331	18.0	20.0	19.0	0.2	1337	chr2R	15372348	5` UTR	CR44458 +	chr2R	15373016	intergenic	CR44458 +	chr2R	15373685	intergenic	not near genes	chr2R_4_15370001	chr2R_15370001	RAL-790
865	chr2R	17147238	17147266	chr2R	17152278	17152312	jockey	9	5047	2.0	4.0	3.0	2.2	5074	chr2R	17147238	intergenic	not near genes	chr2R	17149775	intergenic	not near genes	chr2R	17152312	intergenic	not near genes	chr2R_9_17145001	chr2R_17145001	RAL-790
867	chr2R	17236493	17236534	chr2R	17241717	17241755	copia	8	5224	2.5	4.5	3.5	1.8	5262	chr2R	17236493	intron	mbl +	chr2R	17239124	intron	mbl +	chr2R	17241755	intron	mbl +	chr2R_8_17235001	chr2R_17235001	RAL-790
874	chr2R	17485913	17485950	chr2R	17490692	17490737	F-element	8	4785	4.0	2.0	3.0	2.0	4824	chr2R	17485913	5` UTR,intron	CG43110 -,NT5E-2 +	chr2R	17488325	intron	NT5E-2 +	chr2R	17490737	intron	NT5E-2 +	chr2R_8_17485001	chr2R_17485001	RAL-790
879	chr2R	17784005	17784052	chr2R	17784266	17784305	pogo	9	259	7.0	3.5	5.2	1.5	300	chr2R	17784005	intergenic	mir-31a -	chr2R	17784155	intergenic	mir-31a -	chr2R	17784305	intergenic	mir-31a -	chr2R_9_17780001	chr2R_17780001	RAL-790
885	chr2R	18045653	18045700	chr2R	18046025	18046072	jockey	13	372	5.0	4.0	4.5	2.4	419	chr2R	18045653	intergenic	not near genes	chr2R	18045862	intergenic	not near genes	chr2R	18046072	intergenic	CG5767 -	chr2R_13_18045001	chr2R_18045001	RAL-790
887	chr2R	18111665	18111713	chr2R	18115553	18115596	F-element	7	3887	3.0	1.0	2.0	2.3	3931	chr2R	18111665	intergenic	not near genes	chr2R	18113630	intergenic	not near genes	chr2R	18115596	intergenic	not near genes	chr2R_7_18110001	chr2R_18110001	RAL-790
889	chr2R	18358378	18358402	chr2R	18372607	18372628	roo	5	14227	8.5	0.0	4.2	1.0	14250	chr2R	18358378	intergenic	not near genes	chr2R	18365503	intergenic	not near genes	chr2R	18372628	intergenic	not near genes	chr2R_5_18365001	chr2R_18365001	RAL-790
895	chr2R	18590847	18590898	chr2R	18600019	18600026	roo	6	9160	1.5	1.5	1.5	2.4	9179	chr2R	18590847	intron	GEFmeso -	chr2R	18595436	intron	GEFmeso -	chr2R	18600026	intron	GEFmeso -	chr2R_6_18595001	chr2R_18595001	RAL-790
916	chr2R	19776574	19776623	chr2R	19779917	19779958	jockey	15	3338	1.0	4.0	2.5	4.3	3384	chr2R	19776574	intergenic	not near genes	chr2R	19778266	intergenic	not near genes	chr2R	19779958	intergenic	not near genes	chr2R_15_19775001	chr2R_19775001	RAL-790
918	chr2R	19914824	19914866	chr2R	19922256	19922294	mdg1	8	7431	5.0	2.5	3.8	1.7	7470	chr2R	19914824	intergenic	not near genes	chr2R	19918559	intergenic	not near genes	chr2R	19922294	intergenic	not near genes	chr2R_8_19915001	chr2R_19915001	RAL-790
923	chr2R	20069215	20069245	chr2R	20071874	20071903	opus	7	2656	1.0	1.0	1.0	3.5	2688	chr2R	20069215	intergenic	not near genes	chr2R	20070559	intergenic	not near genes	chr2R	20071903	intergenic	not near genes	chr2R_7_20070001	chr2R_20070001	RAL-790
937	chr2R	20739421	20739468	chr2R	20744209	20744223	F-element	6	4781	2.0	1.0	1.5	2.4	4802	chr2R	20739421	intron	dpr +	chr2R	20741822	intron	dpr +	chr2R	20744223	intron	dpr +	chr2R_6_20740001	chr2R_20740001	RAL-790
938	chr2R	20783294	20783316	chr2R	20788086	20788101	F-element	5	4791	4.5	4.5	4.5	0.9	4807	chr2R	20783294	intergenic	not near genes	chr2R	20785698	intergenic	not near genes	chr2R	20788101	intergenic	CG43666 -	chr2R_5_20785001	chr2R_20785001	RAL-790
947	chr2R	21151096	21151146	chr2R	21153749	21153776	opus	15	2651	3.0	5.5	4.2	2.9	2680	chr2R	21151096	intron	CG30389 -	chr2R	21152436	intron	CG30389 -	chr2R	21153776	intron	CG30389 -	chr2R_15_21150001	chr2R_21150001	RAL-790
958	chr2R	21753065	21753116	chr2R	21753570	21753620	roo	7	500	4.0	0.0	2.0	2.3	555	chr2R	21753065	intergenic	not near genes	chr2R	21753342	intergenic	not near genes	chr2R	21753620	intergenic	not near genes	chr2R_7_21750001	chr2R_21750001	RAL-790
959	chr2R	21809527	21809552	chr2R	21817766	21817812	roo	11	8253	4.5	6.5	5.5	1.7	8285	chr2R	21809527	intergenic	not near genes	chr2R	21813670	intergenic	not near genes	chr2R	21817812	intergenic	not near genes	chr2R_11_21810001	chr2R_21810001	RAL-790
970	chr2R	22349703	22349717	chr2R	22351476	22351511	jockey	6	1792	6.0	3.5	4.8	1.0	1808	chr2R	22349703	intron	Liprin-gamma -	chr2R	22350607	intron	Liprin-gamma -	chr2R	22351511	intron	Liprin-gamma -	chr2R_6_22350001	chr2R_22350001	RAL-790
971	chr2R	22360371	22360404	chr2R	22360817	22360822	jockey	5	440	5.5	3.5	4.5	0.9	451	chr2R	22360371	intron	Liprin-gamma -	chr2R	22360596	intron	Liprin-gamma -	chr2R	22360822	intron	Liprin-gamma -	chr2R_5_22360001	chr2R_22360001	RAL-790
974	chr2R	22465309	22465343	chr2R	22465517	22465562	BS	11	218	6.0	4.0	5.0	1.8	253	chr2R	22465309	intron	CG10384 +	chr2R	22465436	intron	CG10384 +	chr2R	22465562	intron	CG10384 +	chr2R_11_22465001	chr2R_22465001	RAL-790
977	chr2R	22525741	22525785	chr2R	22529316	22529332	jockey	9	3570	1.5	3.5	2.5	2.6	3591	chr2R	22525741	intron	px -	chr2R	22527536	intron	px -	chr2R	22529332	intron	px -	chr2R_9_22525001	chr2R_22525001	RAL-790
981	chr2R	22774953	22774988	chr2R	22775391	22775427	jockey	6	437	2.0	4.5	3.2	1.4	474	chr2R	22774953	intron	CG42260 -	chr2R	22775190	intron	CG42260 -	chr2R	22775427	intron	CG42260 -	chr2R_6_22775001	chr2R_22775001	RAL-790
1004	chr2R	23914290	23914332	chr2R	23921927	23921960	412	8	7636	2.0	3.0	2.5	2.3	7670	chr2R	23914290	exon	kcc +	chr2R	23918125	intron	kcc +	chr2R	23921960	intron	kcc +	chr2R_8_23915001	chr2R_23915001	RAL-790
1006	chr2R	24177216	24177264	chr2R	24184719	24184769	412	18	7502	5.0	3.0	4.0	3.6	7553	chr2R	24177216	3` UTR	Nop60B +	chr2R	24180992	intron	Nop60B +	chr2R	24184769	3` UTR	Nop60B +	chr2R_18_24180001	chr2R_24180001	RAL-790
1009	chr2R	24353426	24353443	chr2R	24361788	24361825	roo	6	8377	4.5	1.5	3.0	1.5	8399	chr2R	24353426	intron,intron	bs +,CR44811 -	chr2R	24357626	intron,intron	bs +,CR44811 -	chr2R	24361825	intron,intron	bs +,CR44811 -	chr2R_6_24355001	chr2R_24355001	RAL-790
1013	chr2R	24647571	24647618	chr2R	24655148	24655168	412	8	7569	2.0	3.0	2.5	2.3	7597	chr2R	24647571	intergenic	not near genes	chr2R	24651370	intergenic	not near genes	chr2R	24655168	intergenic	not near genes	chr2R_8_24650001	chr2R_24650001	RAL-790
1015	chr2R	24763615	24763642	chr2R	24765597	24765630	G2	6	1990	2.0	2.5	2.2	1.9	2015	chr2R	24763615	exon	CG3894 +	chr2R	24764622	intron	CG3894 +	chr2R	24765630	exon	CG3894 +	chr2R_6_24760001	chr2R_24760001	RAL-790
1023	chr2R	25141636	25141682	chr2R	25159346	25159392	roo	7	17702	2.5	8.0	5.2	1.1	17756	chr2R	25141636	intergenic	not near genes	chr2R	25150514	intergenic	not near genes	chr2R	25159392	intergenic	not near genes	chr2R_7_25150001	chr2R_25150001	RAL-790
1034	chr3L	110204	110242	chr3L	119376	119420	roo	12	9183	4.5	3.0	3.8	2.5	9216	chr3L	110204	intergenic	not near genes	chr3L	114812	intergenic	not near genes	chr3L	119420	intergenic	not near genes	chr3L_12_110001	chr3L_110001	RAL-790
1037	chr3L	402683	402711	chr3L	409748	409768	297	9	7066	1.0	5.0	3.0	2.2	7085	chr3L	402683	intergenic	not near genes	chr3L	406226	intergenic	not near genes	chr3L	409768	intergenic	not near genes	chr3L_9_405001	chr3L_405001	RAL-790
1044	chr3L	789896	789945	chr3L	790401	790450	roo	12	503	3.5	3.5	3.5	2.7	554	chr3L	789896	intergenic	not near genes	chr3L	790173	intergenic	not near genes	chr3L	790450	intergenic	not near genes	chr3L_12_790001	chr3L_790001	RAL-790
1046	chr3L	857977	858014	chr3L	866478	866493	Tirant	4	8494	3.0	2.5	2.8	1.1	8516	chr3L	857977	intergenic	not near genes	chr3L	862235	intergenic	not near genes	chr3L	866493	intergenic	CG12502 +	chr3L_4_860001	chr3L_860001	RAL-790
1049	chr3L	939758	939796	chr3L	940896	940936	jockey	8	1139	3.5	4.5	4.0	1.6	1178	chr3L	939758	intron	Glut1 +	chr3L	940347	intron	Glut1 +	chr3L	940936	intron	Glut1 +	chr3L_8_940001	chr3L_940001	RAL-790
1056	chr3L	1154110	1154152	chr3L	1163280	1163322	roo	8	9168	6.5	3.5	5.0	1.3	9212	chr3L	1154110	intron	bab2 -	chr3L	1158716	intron	bab2 -	chr3L	1163322	intron	bab2 -	chr3L_8_1155001	chr3L_1155001	RAL-790
1057	chr3L	1219578	1219620	chr3L	1227331	1227361	412	7	7743	3.0	3.5	3.2	1.7	7783	chr3L	1219578	intron	mwh +	chr3L	1223470	intron	mwh +	chr3L	1227361	intron	mwh +	chr3L_7_1220001	chr3L_1220001	RAL-790
1061	chr3L	1506003	1506032	chr3L	1513600	1513649	17.6	9	7613	3.5	2.5	3.0	2.2	7646	chr3L	1506003	intron,intron	Psa +,cue -	chr3L	1509826	intron,intron	Psa +,cue -	chr3L	1513649	intron,intron	Psa +,cue -	chr3L_9_1505001	chr3L_1505001	RAL-790
1064	chr3L	1740881	1740886	chr3L	1741101	1741111	pogo	4	229	3.0	6.5	4.8	0.7	230	chr3L	1740881	intron	Gk +	chr3L	1740996	intron	Gk +	chr3L	1741111	intron	Gk +	chr3L_4_1740001	chr3L_1740001	RAL-790
1074	chr3L	2447486	2447531	chr3L	2456662	2456707	roo	7	9166	3.5	3.0	3.2	1.7	9221	chr3L	2447486	intron	CG45186 +	chr3L	2452096	intron	CG45186 +	chr3L	2456707	intron	CG45186 +	chr3L_7_2450001	chr3L_2450001	RAL-790
1082	chr3L	2927839	2927867	chr3L	2936119	2936164	Tirant	9	8293	3.5	2.0	2.8	2.4	8325	chr3L	2927839	intron	Shab +	chr3L	2932002	intron	Shab +	chr3L	2936164	intron	Shab +	chr3L_9_2930001	chr3L_2930001	RAL-790
1084	chr3L	3040309	3040334	chr3L	3042113	3042137	S-element	4	1806	5.0	0.0	2.5	1.1	1828	chr3L	3040309	3` UTR	CG2162 +	chr3L	3041223	intergenic	not near genes	chr3L	3042137	intergenic	Jafrac2 +	chr3L_4_3040001	chr3L_3040001	RAL-790
1085	chr3L	3051723	3051756	chr3L	3051985	3051997	pogo	14	259	3.5	0.5	2.0	4.7	274	chr3L	3051723	3` UTR	CG32485 +	chr3L	3051860	intergenic	CG32485 +	chr3L	3051997	intergenic	CG32485 +	chr3L_14_3050001	chr3L_3050001	RAL-790
1089	chr3L	3281432	3281465	chr3L	3281931	3281981	Doc	4	495	1.5	4.0	2.8	1.1	549	chr3L	3281432	intron	CG12017 +	chr3L	3281706	intron	CG12017 +	chr3L	3281981	intron	CG12017 +	chr3L_4_3280001	chr3L_3280001	RAL-790
1101	chr3L	3601301	3601331	chr3L	3606611	3606661	copia	10	5319	1.0	3.0	2.0	3.3	5360	chr3L	3601301	intron	Eip63E +	chr3L	3603981	intron	Eip63E +	chr3L	3606661	intron	Eip63E +	chr3L_10_3600001	chr3L_3600001	RAL-790
1118	chr3L	4328722	4328756	chr3L	4336240	4336274	412	16	7515	5.0	2.5	3.8	3.3	7552	chr3L	4328722	intron	Cip4 -	chr3L	4332498	intron	Cip4 -	chr3L	4336274	exon	Cip4 -	chr3L_16_4330001	chr3L_4330001	RAL-790
1125	chr3L	4901114	4901132	chr3L	4907324	4907336	diver	5	6209	6.5	2.5	4.5	0.9	6222	chr3L	4901114	intergenic	CG13704 +	chr3L	4904225	intergenic	not near genes	chr3L	4907336	intergenic	not near genes	chr3L_5_4900001	chr3L_4900001	RAL-790
1126	chr3L	4901138	4901152	chr3L	4907319	4907356	diver	7	6199	4.0	2.0	3.0	1.8	6218	chr3L	4901138	intergenic	CG13704 +	chr3L	4904247	intergenic	not near genes	chr3L	4907356	intergenic	not near genes	chr3L_7_4900001	chr3L_4900001	RAL-790
1128	chr3L	5034137	5034189	chr3L	5043309	5043361	roo	9	9171	2.0	2.0	2.0	3.0	9224	chr3L	5034137	intron	Con -	chr3L	5038749	intron	Con -	chr3L	5043361	intron	Con -	chr3L_9_5035001	chr3L_5035001	RAL-790
1129	chr3L	5045443	5045472	chr3L	5050239	5050273	Doc	12	4798	6.0	4.0	5.0	2.0	4830	chr3L	5045443	intron	Con -	chr3L	5047858	intron	Con -	chr3L	5050273	intron	Con -	chr3L_12_5045001	chr3L_5045001	RAL-790
1138	chr3L	5537701	5537755	chr3L	5538063	5538088	jockey	13	353	3.0	5.0	4.0	2.6	387	chr3L	5537701	intergenic	not near genes	chr3L	5537894	intergenic	not near genes	chr3L	5538088	intergenic	CG10625 -	chr3L_13_5535001	chr3L_5535001	RAL-790
1141	chr3L	5910012	5910063	chr3L	5910272	5910323	pogo	9	258	3.0	1.0	2.0	3.0	311	chr3L	5910012	intron	CG13288 +	chr3L	5910168	intron	CG13288 +	chr3L	5910323	intron	CG13288 +	chr3L_9_5910001	chr3L_5910001	RAL-790
1142	chr3L	5926328	5926347	chr3L	5926502	5926557	BS	5	195	1.0	2.0	1.5	2.0	229	chr3L	5926328	intron	Vap-33B +	chr3L	5926442	intron	Vap-33B +	chr3L	5926557	intron	Vap-33B +	chr3L_5_5925001	chr3L_5925001	RAL-790
1144	chr3L	6001665	6001708	chr3L	6004385	6004428	jockey	11	2719	6.0	4.5	5.2	1.8	2763	chr3L	6001665	intron	PVRAP +	chr3L	6003046	intron	PVRAP +	chr3L	6004428	intron	PVRAP +	chr3L_11_6000001	chr3L_6000001	RAL-790
1149	chr3L	6220898	6220947	chr3L	6230069	6230093	roo	18	9166	4.0	5.5	4.8	3.1	9195	chr3L	6220898	5` UTR	pncr008:3L +	chr3L	6225496	intergenic	not near genes	chr3L	6230093	intergenic	not near genes	chr3L_18_6225001	chr3L_6225001	RAL-790
1150	chr3L	6335001	6335039	chr3L	6335479	6335530	297	8	488	1.0	2.5	1.8	2.9	529	chr3L	6335001	intron	CG13300 -	chr3L	6335266	intron	CG13300 -	chr3L	6335530	intron	CG13300 -	chr3L_8_6335001	chr3L_6335001	RAL-790
1151	chr3L	6405643	6405686	chr3L	6432127	6432170	roo	11	26483	4.5	4.0	4.2	2.1	26527	chr3L	6405643	intron	CG42747 +	chr3L	6418906	intron	CG42747 +	chr3L	6432170	intron	CG42747 +	chr3L_11_6415001	chr3L_6415001	RAL-790
1154	chr3L	6620595	6620605	chr3L	6621055	6621065	Rt1c	4	458	3.5	9.5	6.5	0.5	470	chr3L	6620595	intergenic	not near genes	chr3L	6620830	intergenic	not near genes	chr3L	6621065	intergenic	not near genes	chr3L_4_6620001	chr3L_6620001	RAL-790
1155	chr3L	6781103	6781149	chr3L	6783136	6783179	Doc	6	2032	5.0	0.0	2.5	1.7	2076	chr3L	6781103	intergenic	not near genes	chr3L	6782141	intergenic	not near genes	chr3L	6783179	intergenic	not near genes	chr3L_6_6780001	chr3L_6780001	RAL-790
1159	chr3L	6887501	6887537	chr3L	6895013	6895038	roo	10	7510	3.5	4.5	4.0	2.0	7537	chr3L	6887501	intergenic	not near genes	chr3L	6891270	intergenic	not near genes	chr3L	6895038	intergenic	not near genes	chr3L_10_6890001	chr3L_6890001	RAL-790
1161	chr3L	6994886	6994914	chr3L	6995506	6995535	BS	7	628	0.5	4.0	2.2	2.2	649	chr3L	6994886	intergenic	bin +	chr3L	6995210	intergenic	not near genes	chr3L	6995535	intergenic	not near genes	chr3L_7_6995001	chr3L_6995001	RAL-790
1166	chr3L	7129935	7129978	chr3L	7130147	7130190	BS	7	212	3.5	3.5	3.5	1.6	255	chr3L	7129935	intergenic	CG15829 +	chr3L	7130062	intergenic	CG15829 +	chr3L	7130190	intergenic	not near genes	chr3L_7_7130001	chr3L_7130001	RAL-790
1173	chr3L	7377309	7377343	chr3L	7380429	7380467	297	10	3123	2.5	3.0	2.8	2.6	3158	chr3L	7377309	intron	SMSr -	chr3L	7378888	intron	SMSr -	chr3L	7380467	intron	SMSr -	chr3L_10_7375001	chr3L_7375001	RAL-790
1181	chr3L	7793692	7793743	chr3L	7800764	7800790	297	11	7067	7.0	5.5	6.2	1.5	7098	chr3L	7793692	intron	CG32369 -	chr3L	7797241	intron	CG32369 -	chr3L	7800790	intron	CG32369 -	chr3L_11_7795001	chr3L_7795001	RAL-790
1186	chr3L	7886515	7886537	chr3L	7889052	7889075	Stalker4	5	2537	2.0	2.5	2.2	1.6	2560	chr3L	7886515	intron	CG32365 +	chr3L	7887795	intron	CG32365 +	chr3L	7889075	intron	CG32365 +	chr3L_5_7885001	chr3L_7885001	RAL-790
1187	chr3L	7916812	7916846	chr3L	7926003	7926037	roo	9	9189	5.5	2.5	4.0	1.8	9225	chr3L	7916812	3` UTR	syd -	chr3L	7921424	intron	syd -	chr3L	7926037	3` UTR	syd -	chr3L_9_7920001	chr3L_7920001	RAL-790
1188	chr3L	7985358	7985397	chr3L	7987707	7987745	NOF	9	2347	2.5	5.0	3.8	1.9	2387	chr3L	7985358	intron	nmo +	chr3L	7986552	intron	nmo +	chr3L	7987745	intron	nmo +	chr3L_9_7985001	chr3L_7985001	RAL-790
1206	chr3L	8791261	8791309	chr3L	8796701	8796748	I-element	9	5439	2.5	0.0	1.2	4.1	5487	chr3L	8791261	exon	Fhos +	chr3L	8794004	intron	Fhos +	chr3L	8796748	intron	Fhos +	chr3L_9_8790001	chr3L_8790001	RAL-790
1213	chr3L	9076911	9076954	chr3L	9084485	9084534	412	12	7574	2.0	3.0	2.5	3.4	7623	chr3L	9076911	exon	Tequila +	chr3L	9080722	intron	Tequila +	chr3L	9084534	exon	Tequila +	chr3L_12_9080001	chr3L_9080001	RAL-790
1214	chr3L	9164675	9164714	chr3L	9166162	9166198	hobo	11	1482	7.0	0.0	3.5	2.4	1523	chr3L	9164675	intron	Rdl -	chr3L	9165436	intron	Rdl -	chr3L	9166198	intron	Rdl -	chr3L_11_9165001	chr3L_9165001	RAL-790
1215	chr3L	9219255	9219272	chr3L	9219912	9219949	jockey	4	676	5.0	2.0	3.5	0.9	694	chr3L	9219255	intergenic	not near genes	chr3L	9219602	intergenic	not near genes	chr3L	9219949	intergenic	not near genes	chr3L_4_9215001	chr3L_9215001	RAL-790
1216	chr3L	9270612	9270640	chr3L	9278387	9278415	roo	5	7775	2.5	2.0	2.2	1.6	7803	chr3L	9270612	intron	GluRIB +	chr3L	9274514	intron	GluRIB +	chr3L	9278415	exon	GluRIB +	chr3L_5_9270001	chr3L_9270001	RAL-790
1223	chr3L	9575908	9575940	chr3L	9581006	9581036	jockey	6	5098	2.0	5.0	3.5	1.3	5128	chr3L	9575908	intron	CG42673 +	chr3L	9578472	intron	CG42673 +	chr3L	9581036	intron	CG42673 +	chr3L_6_9575001	chr3L_9575001	RAL-790
1229	chr3L	9929651	9929700	chr3L	9938452	9938501	roo	11	8798	2.5	7.0	4.8	1.9	8850	chr3L	9929651	intron	CG34356 +	chr3L	9934076	intron	CG34356 +	chr3L	9938501	intron	CG34356 +	chr3L_11_9930001	chr3L_9930001	RAL-790
1234	chr3L	10060100	10060117	chr3L	10067695	10067716	17.6	6	7596	7.5	6.5	7.0	0.8	7616	chr3L	10060100	intron	dpr6 +	chr3L	10063908	intron	dpr6 +	chr3L	10067716	intron	dpr6 +	chr3L_6_10060001	chr3L_10060001	RAL-790
1242	chr3L	10414945	10414973	chr3L	10417319	10417365	Doc	9	2385	0.5	1.0	0.8	5.0	2420	chr3L	10414945	intergenic	CG12362 +	chr3L	10416155	intergenic	not near genes	chr3L	10417365	intergenic	not near genes	chr3L_9_10415001	chr3L_10415001	RAL-790
1256	chr3L	11087066	11087079	chr3L	11088870	11088881	S-element	4	1804	1.5	5.0	3.2	1.0	1815	chr3L	11087066	intron	JIL-1 -	chr3L	11087974	intron	JIL-1 -	chr3L	11088881	intron	JIL-1 -	chr3L_4_11085001	chr3L_11085001	RAL-790
1258	chr3L	11105280	11105322	chr3L	11107011	11107053	X-element	7	1730	5.5	2.5	4.0	1.4	1773	chr3L	11105280	intergenic	not near genes	chr3L	11106166	intergenic	not near genes	chr3L	11107053	exon	CG32073 -	chr3L_7_11105001	chr3L_11105001	RAL-790
1263	chr3L	11264452	11264497	chr3L	11271423	11271443	17.6	8	6964	1.5	4.5	3.0	2.0	6991	chr3L	11264452	intergenic	not near genes	chr3L	11267948	intergenic	not near genes	chr3L	11271443	intergenic	not near genes	chr3L_8_11265001	chr3L_11265001	RAL-790
1264	chr3L	11277451	11277475	chr3L	11278454	11278482	Rt1a	5	1007	2.5	1.0	1.8	1.8	1031	chr3L	11277451	intergenic	not near genes	chr3L	11277966	intergenic	not near genes	chr3L	11278482	intergenic	not near genes	chr3L_5_11275001	chr3L_11275001	RAL-790
1270	chr3L	11564796	11564813	chr3L	11572405	11572432	412	4	7609	1.0	2.0	1.5	1.6	7636	chr3L	11564796	exon	CG33267 +	chr3L	11568614	intron	CG33267 +	chr3L	11572432	exon	CG33267 +	chr3L_4_11565001	chr3L_11565001	RAL-790
1275	chr3L	11723070	11723114	chr3L	11727885	11727929	Doc	23	4813	5.0	7.5	6.2	3.2	4859	chr3L	11723070	3` UTR	Bmcp +	chr3L	11725500	intron	Bmcp +	chr3L	11727929	3` UTR	Bmcp +	chr3L_23_11725001	chr3L_11725001	RAL-790
1279	chr3L	11864555	11864584	chr3L	11865849	11865899	pogo	10	1306	1.5	6.5	4.0	2.0	1344	chr3L	11864555	intron	CG44837 -	chr3L	11865227	intron	CG44837 -	chr3L	11865899	intron	CG44837 -	chr3L_10_11865001	chr3L_11865001	RAL-790
1303	chr3L	12874905	12874956	chr3L	12877217	12877268	jockey	12	2310	1.0	6.5	3.8	2.5	2363	chr3L	12874905	intergenic	not near genes	chr3L	12876086	intergenic	not near genes	chr3L	12877268	intergenic	not near genes	chr3L_12_12875001	chr3L_12875001	RAL-790
1305	chr3L	12919261	12919289	chr3L	12924765	12924772	Rt1c	4	5498	5.5	3.5	4.5	0.7	5511	chr3L	12919261	intergenic	not near genes	chr3L	12922016	intergenic	not near genes	chr3L	12924772	intergenic	not near genes	chr3L_4_12920001	chr3L_12920001	RAL-790
1306	chr3L	12957772	12957816	chr3L	12962273	12962318	copia	9	4501	5.5	5.0	5.2	1.5	4546	chr3L	12957772	intergenic	not near genes	chr3L	12960045	intergenic	not near genes	chr3L	12962318	intergenic	not near genes	chr3L_9_12960001	chr3L_12960001	RAL-790
1319	chr3L	13525155	13525178	chr3L	13532953	13532966	roo	7	7807	11.0	2.5	6.8	0.9	7811	chr3L	13525155	intergenic	not near genes	chr3L	13529060	intergenic	not near genes	chr3L	13532966	intergenic	not near genes	chr3L_7_13525001	chr3L_13525001	RAL-790
1324	chr3L	13804538	13804565	chr3L	13822833	13822871	roo	7	18301	3.0	1.5	2.2	2.2	18333	chr3L	13804538	intergenic	not near genes	chr3L	13813704	intergenic	not near genes	chr3L	13822871	intergenic	not near genes	chr3L_7_13810001	chr3L_13810001	RAL-790
1334	chr3L	14245566	14245592	chr3L	14245663	14245706	1360	6	111	3.0	4.0	3.5	1.3	140	chr3L	14245566	3` UTR	CR44561 -	chr3L	14245636	3` UTR	CR44561 -	chr3L	14245706	intergenic	CR44561 -,CR44560 +	chr3L_6_14245001	chr3L_14245001	RAL-790
1336	chr3L	14267366	14267399	chr3L	14271814	14271829	F-element	13	4452	3.5	6.0	4.8	2.2	4463	chr3L	14267366	intergenic	not near genes	chr3L	14269598	intergenic	not near genes	chr3L	14271829	intergenic	not near genes	chr3L_13_14265001	chr3L_14265001	RAL-790
1339	chr3L	14295965	14296014	chr3L	14296468	14296520	roo	7	501	1.5	5.5	3.5	1.6	555	chr3L	14295965	intron	fz +	chr3L	14296242	intron	fz +	chr3L	14296520	intron	fz +	chr3L_7_14295001	chr3L_14295001	RAL-790
1343	chr3L	14468435	14468476	chr3L	14473661	14473695	copia	13	5224	3.0	3.0	3.0	3.2	5260	chr3L	14468435	intron	bbg -	chr3L	14471065	intron	bbg -	chr3L	14473695	intron	bbg -	chr3L_13_14470001	chr3L_14470001	RAL-790
1366	chr3L	15295747	15295774	chr3L	15298610	15298634	gypsy5	8	2860	8.5	6.0	7.2	1.0	2887	chr3L	15295747	intergenic	not near genes	chr3L	15297190	intergenic	not near genes	chr3L	15298634	intergenic	Best4 +	chr3L_8_15295001	chr3L_15295001	RAL-790
1369	chr3L	15423741	15423782	chr3L	15426605	15426646	opus	12	2863	3.0	5.0	4.0	2.4	2905	chr3L	15423741	intergenic	not near genes	chr3L	15425194	intergenic	not near genes	chr3L	15426646	intergenic	not near genes	chr3L_12_15425001	chr3L_15425001	RAL-790
1375	chr3L	15554901	15554951	chr3L	15556706	15556758	S-element	21	1804	5.0	4.5	4.8	3.6	1857	chr3L	15554901	intron	AGO2 +	chr3L	15555830	intron	AGO2 +	chr3L	15556758	intron	AGO2 +	chr3L_21_15555001	chr3L_15555001	RAL-790
1383	chr3L	15929185	15929226	chr3L	15938352	15938393	roo	12	9167	4.5	4.0	4.2	2.3	9208	chr3L	15929185	intron	Pka-C3 -	chr3L	15933789	intron	Pka-C3 -	chr3L	15938393	intron	Pka-C3 -	chr3L_12_15930001	chr3L_15930001	RAL-790
1390	chr3L	16184087	16184140	chr3L	16188926	16188944	X-element	16	4835	3.5	2.5	3.0	4.0	4857	chr3L	16184087	intergenic	not near genes	chr3L	16186516	intergenic	not near genes	chr3L	16188944	intergenic	not near genes	chr3L_16_16185001	chr3L_16185001	RAL-790
1398	chr3L	16443844	16443877	chr3L	16446196	16446215	Doc	9	2353	3.0	2.5	2.8	2.4	2371	chr3L	16443844	intron,intron	CG33158 +,dsx-c73A -	chr3L	16445030	intron,intron	CG33158 +,dsx-c73A -	chr3L	16446215	intron,intron	CG33158 +,dsx-c73A -	chr3L_9_16445001	chr3L_16445001	RAL-790
1399	chr3L	16493959	16493997	chr3L	16494493	16494534	jockey	7	534	4.5	6.0	5.2	1.1	575	chr3L	16493959	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494246	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L	16494534	intron,intron,intron	CG33158 +,CG42514 -,CG43373 -	chr3L_7_16490001	chr3L_16490001	RAL-790
1403	chr3L	16616498	16616542	chr3L	16621839	16621871	297	8	5340	2.0	1.5	1.8	2.9	5373	chr3L	16616498	3` UTR	Abl -	chr3L	16619184	3` UTR	Abl -	chr3L	16621871	3` UTR	Abl -	chr3L_8_16615001	chr3L_16615001	RAL-790
1404	chr3L	16684019	16684041	chr3L	16689260	16689282	copia	6	5241	1.0	5.0	3.0	1.5	5263	chr3L	16684019	intron,intron	Lasp -,CG43954 -	chr3L	16686650	intron,intron	Lasp -,CG43954 -	chr3L	16689282	intron,intron,5` UTR	Lasp -,CG43954 -,CR45179 +	chr3L_6_16685001	chr3L_16685001	RAL-790
1419	chr3L	16945732	16945753	chr3L	16954880	16954891	roo	8	9149	4.0	1.5	2.8	2.1	9159	chr3L	16945732	exon	Obp73a +	chr3L	16950312	intergenic	not near genes	chr3L	16954891	5` UTR	Nc73EF +	chr3L_8_16950001	chr3L_16950001	RAL-790
1420	chr3L	17034926	17034948	chr3L	17035134	17035156	G2	9	208	3.0	6.5	4.8	1.6	230	chr3L	17034926	intergenic	not near genes	chr3L	17035041	intergenic	not near genes	chr3L	17035156	intergenic	not near genes	chr3L_9_17035001	chr3L_17035001	RAL-790
1421	chr3L	17084984	17085035	chr3L	17094153	17094197	roo	14	9168	3.5	5.0	4.2	2.7	9213	chr3L	17084984	intron	Rbp6 -	chr3L	17089590	intron	Rbp6 -	chr3L	17094197	intron	Rbp6 -	chr3L_14_17085001	chr3L_17085001	RAL-790
1434	chr3L	17730829	17730880	chr3L	17738179	17738230	mdg1	14	7347	5.0	6.5	5.8	2.1	7401	chr3L	17730829	intron	Ccn +	chr3L	17734530	intron	Ccn +	chr3L	17738230	intron	Ccn +	chr3L_14_17730001	chr3L_17730001	RAL-790
1438	chr3L	17799790	17799839	chr3L	17801597	17801646	S-element	14	1806	5.5	4.5	5.0	2.3	1856	chr3L	17799790	intron	NUCB1 -	chr3L	17800718	intron	NUCB1 -	chr3L	17801646	intron	NUCB1 -	chr3L_14_17800001	chr3L_17800001	RAL-790
1440	chr3L	17918377	17918381	chr3L	17921188	17921204	opus	4	2819	2.5	2.0	2.2	1.2	2827	chr3L	17918377	intergenic	not near genes	chr3L	17919790	intergenic	not near genes	chr3L	17921204	intergenic	not near genes	chr3L_4_17915001	chr3L_17915001	RAL-790
1445	chr3L	18047691	18047701	chr3L	18056768	18056778	roo	4	9077	11.0	5.0	8.0	0.4	9087	chr3L	18047691	intron	Eip75B -	chr3L	18052234	intron	Eip75B -	chr3L	18056778	intron	Eip75B -	chr3L_4_18050001	chr3L_18050001	RAL-790
1446	chr3L	18047708	18047729	chr3L	18056762	18056803	roo	7	9073	5.0	4.0	4.5	1.3	9095	chr3L	18047708	intron	Eip75B -	chr3L	18052256	intron	Eip75B -	chr3L	18056803	intron	Eip75B -	chr3L_7_18050001	chr3L_18050001	RAL-790
1467	chr3L	18506112	18506160	chr3L	18509595	18509643	F-element	10	3480	3.5	3.5	3.5	2.2	3531	chr3L	18506112	intergenic	not near genes	chr3L	18507878	intergenic	not near genes	chr3L	18509643	intergenic	not near genes	chr3L_10_18505001	chr3L_18505001	RAL-790
1468	chr3L	18528608	18528660	chr3L	18537789	18537828	roo	14	9179	6.0	5.0	5.5	2.2	9220	chr3L	18528608	intergenic	not near genes	chr3L	18533218	intergenic	not near genes	chr3L	18537828	intergenic	not near genes	chr3L_14_18530001	chr3L_18530001	RAL-790
1469	chr3L	18593951	18593977	chr3L	18595936	18595962	Doc	11	1992	5.0	0.5	2.8	2.9	2011	chr3L	18593951	intergenic	term -	chr3L	18594956	intergenic	not near genes	chr3L	18595962	intergenic	CR45389 +	chr3L_11_18590001	chr3L_18590001	RAL-790
1474	chr3L	18710778	18710791	chr3L	18718748	18718761	Stalker2	5	7970	4.0	1.0	2.5	1.4	7983	chr3L	18710778	intergenic	not near genes	chr3L	18714770	intergenic	not near genes	chr3L	18718761	intergenic	not near genes	chr3L_5_18710001	chr3L_18710001	RAL-790
1478	chr3L	18772398	18772440	chr3L	18781091	18781138	roo	14	8697	3.0	2.0	2.5	4.0	8740	chr3L	18772398	intron	ftz-f1 -	chr3L	18776768	intron	ftz-f1 -	chr3L	18781138	intron	ftz-f1 -	chr3L_14_18775001	chr3L_18775001	RAL-790
1486	chr3L	19008824	19008843	chr3L	19009181	19009195	jockey	4	354	3.5	5.5	4.5	0.7	371	chr3L	19008824	intron	nkd -	chr3L	19009010	intron	nkd -	chr3L	19009195	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-790
1487	chr3L	19008857	19008872	chr3L	19009180	19009200	jockey	4	333	2.0	5.0	3.5	0.9	343	chr3L	19008857	intron	nkd -	chr3L	19009028	intron	nkd -	chr3L	19009200	intron	nkd -	chr3L_4_19005001	chr3L_19005001	RAL-790
1492	chr3L	19115646	19115661	chr3L	19115832	19115849	BS	6	194	4.0	1.5	2.8	1.6	203	chr3L	19115646	intron	CG14082 -	chr3L	19115748	intron	CG14082 -	chr3L	19115849	intron	CG14082 -	chr3L_6_19115001	chr3L_19115001	RAL-790
1493	chr3L	19117046	19117072	chr3L	19124488	19124539	mdg1	9	7451	5.0	5.0	5.0	1.5	7493	chr3L	19117046	intron	CG14082 -	chr3L	19120792	intron	CG14082 -	chr3L	19124539	intron	CG14082 -	chr3L_9_19120001	chr3L_19120001	RAL-790
1506	chr3L	19820278	19820300	chr3L	19827847	19827868	412	9	7569	4.5	3.0	3.8	1.9	7590	chr3L	19820278	intron	Deaf1 +	chr3L	19824073	intron	Deaf1 +	chr3L	19827868	intron	Deaf1 +	chr3L_9_19820001	chr3L_19820001	RAL-790
1508	chr3L	19848494	19848528	chr3L	19857697	19857732	roo	7	9205	6.0	5.5	5.8	1.0	9238	chr3L	19848494	intron	Papss +	chr3L	19853113	intron	Papss +	chr3L	19857732	intron	Papss +	chr3L_7_19850001	chr3L_19850001	RAL-790
1509	chr3L	19861806	19861852	chr3L	19863614	19863660	S-element	8	1808	2.0	0.5	1.2	3.6	1854	chr3L	19861806	5` UTR	CR45433 +	chr3L	19862733	intergenic	not near genes	chr3L	19863660	intergenic	not near genes	chr3L_8_19860001	chr3L_19860001	RAL-790
1514	chr3L	20113642	20113676	chr3L	20122919	20122953	roo	12	9276	7.0	6.0	6.5	1.6	9311	chr3L	20113642	intergenic	not near genes	chr3L	20118298	intergenic	not near genes	chr3L	20122953	intergenic	not near genes	chr3L_12_20115001	chr3L_20115001	RAL-790
1519	chr3L	20257322	20257358	chr3L	20258452	20258498	pogo	10	1138	2.0	5.0	3.5	2.2	1176	chr3L	20257322	intron	rdgC +	chr3L	20257910	intron	rdgC +	chr3L	20258498	intron	rdgC +	chr3L_10_20255001	chr3L_20255001	RAL-790
1523	chr3L	20476735	20476781	chr3L	20484353	20484400	springer	14	7615	2.0	4.0	3.0	3.5	7665	chr3L	20476735	3` UTR	isoQC +	chr3L	20480568	intergenic	not near genes	chr3L	20484400	3` UTR	ZnT77C -	chr3L_14_20480001	chr3L_20480001	RAL-790
1528	chr3L	20821279	20821307	chr3L	20824768	20824796	NOF	6	3486	5.5	4.0	4.8	1.0	3517	chr3L	20821279	intron	Pka-R1 +	chr3L	20823038	intron	Pka-R1 +	chr3L	20824796	intron	Pka-R1 +	chr3L_6_20820001	chr3L_20820001	RAL-790
1534	chr3L	21014904	21014921	chr3L	21023399	21023422	Tirant	4	8496	4.0	2.0	3.0	1.0	8518	chr3L	21014904	intron	skd -	chr3L	21019163	intron	skd -	chr3L	21023422	intron	skd -	chr3L_4_21015001	chr3L_21015001	RAL-790
1536	chr3L	21151847	21151897	chr3L	21156951	21157001	flea	23	5103	2.5	4.5	3.5	5.1	5154	chr3L	21151847	intron	Ac78C -	chr3L	21154424	intron	Ac78C -	chr3L	21157001	intron	Ac78C -	chr3L_23_21150001	chr3L_21150001	RAL-790
1541	chr3L	21306129	21306174	chr3L	21315308	21315353	roo	12	9178	3.5	2.0	2.8	3.2	9224	chr3L	21306129	3` UTR	CG7632 +	chr3L	21310741	intron	Pc -	chr3L	21315353	3` UTR	Pc -	chr3L_12_21310001	chr3L_21310001	RAL-790
1542	chr3L	21361711	21361753	chr3L	21362684	21362726	G2	13	971	2.5	4.5	3.5	2.9	1015	chr3L	21361711	intergenic	CG32440 +	chr3L	21362218	intergenic	not near genes	chr3L	21362726	intergenic	not near genes	chr3L_13_21360001	chr3L_21360001	RAL-790
1543	chr3L	21372722	21372748	chr3L	21379249	21379276	McClintock	9	6527	3.0	8.5	5.8	1.3	6554	chr3L	21372722	intergenic	not near genes	chr3L	21375999	intergenic	not near genes	chr3L	21379276	intergenic	not near genes	chr3L_9_21375001	chr3L_21375001	RAL-790
1548	chr3L	21498837	21498863	chr3L	21500469	21500515	1360	5	1646	0.5	1.5	1.0	2.5	1678	chr3L	21498837	intron	Glg1 -	chr3L	21499676	intron	Glg1 -	chr3L	21500515	intron	Glg1 -	chr3L_5_21495001	chr3L_21495001	RAL-790
1549	chr3L	21501151	21501172	chr3L	21501265	21501285	1360	6	112	3.0	6.5	4.8	1.0	134	chr3L	21501151	intron	Glg1 -	chr3L	21501218	intron	Glg1 -	chr3L	21501285	intron	Glg1 -	chr3L_6_21500001	chr3L_21500001	RAL-790
1560	chr3L	21952430	21952465	chr3L	21953193	21953228	transib1	11	761	6.5	1.0	3.8	2.3	798	chr3L	21952430	intergenic	not near genes	chr3L	21952829	intergenic	not near genes	chr3L	21953228	intergenic	not near genes	chr3L_11_21950001	chr3L_21950001	RAL-790
1564	chr3L	22099654	22099701	chr3L	22105860	22105907	3S18	18	6202	2.0	8.0	5.0	3.0	6253	chr3L	22099654	intergenic	not near genes	chr3L	22102780	intergenic	not near genes	chr3L	22105907	intergenic	not near genes	chr3L_18_22100001	chr3L_22100001	RAL-790
1574	chr3L	22617169	22617217	chr3L	22624641	22624689	blood	9	7465	5.0	7.0	6.0	1.3	7520	chr3L	22617169	intron	CG14459 -	chr3L	22620929	intron	CG14459 -	chr3L	22624689	intron	CG14459 -	chr3L_9_22620001	chr3L_22620001	RAL-790
1577	chr3L	22761375	22761416	chr3L	22766818	22766851	Ivk	21	5450	2.0	3.0	2.5	6.0	5476	chr3L	22761375	intron	SPoCk +	chr3L	22764113	intron	SPoCk +	chr3L	22766851	intron	SPoCk +	chr3L_21_22760001	chr3L_22760001	RAL-790
1580	chr3L	22865973	22866005	chr3L	22867123	22867158	Doc	8	1152	6.5	4.0	5.2	1.3	1185	chr3L	22865973	intron	CG33170 +	chr3L	22866566	intron	CG33170 +	chr3L	22867158	intron	CG33170 +	chr3L_8_22865001	chr3L_22865001	RAL-790
1586	chr3L	22989844	22989888	chr3L	22996838	22996882	297	8	6992	5.0	8.0	6.5	1.1	7038	chr3L	22989844	intergenic	not near genes	chr3L	22993363	intergenic	not near genes	chr3L	22996882	intergenic	not near genes	chr3L_8_22990001	chr3L_22990001	RAL-790
1587	chr3L	23042214	23042250	chr3L	23048986	23049016	gypsy6	10	6767	5.0	2.5	3.8	2.1	6802	chr3L	23042214	intergenic	not near genes	chr3L	23045615	intergenic	not near genes	chr3L	23049016	intergenic	not near genes	chr3L_10_23045001	chr3L_23045001	RAL-790
1591	chr3L	24012400	24012431	chr3L	24020761	24020792	roo	7	8361	1.0	5.0	3.0	1.8	8392	chr3L	24012400	intergenic	not near genes	chr3L	24016596	intergenic	not near genes	chr3L	24020792	intergenic	not near genes	chr3L_7_24015001	chr3L_24015001	RAL-790
1592	chr3L	24168630	24168654	chr3L	24176391	24176409	ZAM	6	7760	2.0	0.5	1.2	2.7	7779	chr3L	24168630	intron	Snap25 +	chr3L	24172520	intron	Snap25 +	chr3L	24176409	intron	Snap25 +	chr3L_6_24170001	chr3L_24170001	RAL-790
1594	chr3L	24791875	24791910	chr3L	24796674	24796709	Doc	7	4799	4.5	5.0	4.8	1.2	4834	chr3L	24791875	intergenic	not near genes	chr3L	24794292	intergenic	not near genes	chr3L	24796709	intergenic	not near genes	chr3L_7_24790001	chr3L_24790001	RAL-790
1605	chr3R	2446803	2446809	chr3R	2449032	2449055	1360	4	2234	25.0	37.0	31.0	0.1	2252	chr3R	2446803	intergenic	not near genes	chr3R	2447929	intergenic	not near genes	chr3R	2449055	intergenic	not near genes	chr3R_4_2445001	chr3R_2445001	RAL-790
1610	chr3R	4206056	4206096	chr3R	4211646	4211675	mdg3	17	5589	5.0	3.0	4.0	3.4	5619	chr3R	4206056	intron	CG14636 -	chr3R	4208866	intron	CG14636 -	chr3R	4211675	intron	CG14636 -	chr3R_17_4205001	chr3R_4205001	RAL-790
1611	chr3R	4366740	4366784	chr3R	4375143	4375187	roo	16	8403	10.0	5.0	7.5	1.9	8447	chr3R	4366740	3` UTR	CG1090 +	chr3R	4370964	intergenic	not near genes	chr3R	4375187	5` UTR	CR44922 +	chr3R_16_4370001	chr3R_4370001	RAL-790
1612	chr3R	4408396	4408440	chr3R	4412715	4412744	Juan	17	4319	5.0	7.0	6.0	2.4	4348	chr3R	4408396	intron	CG32944 -	chr3R	4410570	intron	CG32944 -	chr3R	4412744	intron	CG32944 -	chr3R_17_4410001	chr3R_4410001	RAL-790
1614	chr3R	4609531	4609572	chr3R	4610715	4610747	1360	13	1181	6.5	4.5	5.5	2.0	1216	chr3R	4609531	intergenic	not near genes	chr3R	4610139	intergenic	not near genes	chr3R	4610747	intergenic	not near genes	chr3R_13_4610001	chr3R_4610001	RAL-790
1617	chr3R	4753231	4753267	chr3R	4757548	4757590	F-element	4	4320	6.0	4.0	5.0	0.7	4359	chr3R	4753231	intron,intron	atms +,CG44098 -	chr3R	4755410	intron,intron	atms +,CG44098 -	chr3R	4757590	intron,exon	atms +,CG44098 -	chr3R_4_4755001	chr3R_4755001	RAL-790
1622	chr3R	5045833	5045875	chr3R	5052955	5052997	HMS-Beagle	14	7121	7.0	4.0	5.5	2.2	7164	chr3R	5045833	intron	CR43635 -	chr3R	5049415	intergenic	not near genes	chr3R	5052997	intergenic	CR45588 -	chr3R_14_5045001	chr3R_5045001	RAL-790
1623	chr3R	5067961	5068007	chr3R	5073496	5073543	mdg3	18	5533	5.0	5.5	5.2	2.9	5582	chr3R	5067961	intergenic	not near genes	chr3R	5070752	intergenic	not near genes	chr3R	5073543	intergenic	not near genes	chr3R_18_5070001	chr3R_5070001	RAL-790
1626	chr3R	5338383	5338428	chr3R	5343580	5343604	Rt1c	7	5192	3.0	7.0	5.0	1.2	5221	chr3R	5338383	intron	mtd -	chr3R	5340994	intron	mtd -	chr3R	5343604	intron	mtd -	chr3R_7_5340001	chr3R_5340001	RAL-790
1627	chr3R	5445940	5445993	chr3R	5452420	5452473	Burdock	16	6478	4.0	3.0	3.5	3.6	6533	chr3R	5445940	intron	CG14669 +	chr3R	5449206	intron	CG14669 +	chr3R	5452473	intron	CG14669 +	chr3R_16_5445001	chr3R_5445001	RAL-790
1630	chr3R	5746008	5746019	chr3R	5746263	5746280	pogo	7	258	2.0	3.5	2.8	1.8	272	chr3R	5746008	3` UTR	Madm +	chr3R	5746144	3` UTR	Madm +	chr3R	5746280	3` UTR	Madm +	chr3R_7_5745001	chr3R_5745001	RAL-790
1631	chr3R	5746027	5746046	chr3R	5746256	5746299	pogo	12	256	2.5	3.0	2.8	3.2	272	chr3R	5746027	3` UTR	Madm +	chr3R	5746163	3` UTR	Madm +	chr3R	5746299	3` UTR	Madm +	chr3R_12_5745001	chr3R_5745001	RAL-790
1632	chr3R	5747015	5747037	chr3R	5753201	5753248	diver	10	6204	9.5	5.0	7.2	1.2	6233	chr3R	5747015	intergenic	Madm +	chr3R	5750132	intergenic	not near genes	chr3R	5753248	intergenic	CG2091 -	chr3R_10_5750001	chr3R_5750001	RAL-790
1633	chr3R	5809093	5809142	chr3R	5809363	5809412	pogo	9	265	3.0	5.0	4.0	1.8	319	chr3R	5809093	3` UTR	CG11000 +	chr3R	5809252	3` UTR	CG11000 +	chr3R	5809412	3` UTR	CG11000 +	chr3R_9_5805001	chr3R_5805001	RAL-790
1634	chr3R	5822357	5822410	chr3R	5823544	5823578	1360	14	1185	3.5	2.5	3.0	3.5	1221	chr3R	5822357	3` UTR	CG2023 -	chr3R	5822968	3` UTR	CG2023 -	chr3R	5823578	3` UTR	CG2023 -	chr3R_14_5820001	chr3R_5820001	RAL-790
1635	chr3R	5927565	5927582	chr3R	5927801	5927840	pogo	5	249	2.5	4.0	3.2	1.2	275	chr3R	5927565	intron	CG34113 -	chr3R	5927702	intron	CG34113 -	chr3R	5927840	intron	CG34113 -	chr3R_5_5925001	chr3R_5925001	RAL-790
1638	chr3R	6015972	6015994	chr3R	6024447	6024494	Tirant	5	8485	1.0	0.0	0.5	3.3	8522	chr3R	6015972	intergenic	not near genes	chr3R	6020233	intergenic	not near genes	chr3R	6024494	intergenic	not near genes	chr3R_5_6020001	chr3R_6020001	RAL-790
1643	chr3R	6206262	6206310	chr3R	6206499	6206519	BS	8	229	2.0	4.5	3.2	1.9	257	chr3R	6206262	exon	Osi24 +	chr3R	6206390	intron	Osi24 +	chr3R	6206519	intron	Osi24 +	chr3R_8_6205001	chr3R_6205001	RAL-790
1647	chr3R	6510009	6510047	chr3R	6515110	6515148	jockey	10	5100	5.5	5.0	5.2	1.6	5139	chr3R	6510009	intergenic	not near genes	chr3R	6512578	intergenic	not near genes	chr3R	6515148	intergenic	not near genes	chr3R_10_6510001	chr3R_6510001	RAL-790
1684	chr3R	7694557	7694606	chr3R	7713638	7713687	invader3	8	19080	3.0	3.0	3.0	2.0	19130	chr3R	7694557	3` UTR	Nlg1 +	chr3R	7704122	intergenic	not near genes	chr3R	7713687	intergenic	not near genes	chr3R_8_7700001	chr3R_7700001	RAL-790
1685	chr3R	7729451	7729498	chr3R	7737409	7737449	Stalker2	9	7957	6.0	6.5	6.2	1.2	7998	chr3R	7729451	intergenic	not near genes	chr3R	7733450	intergenic	not near genes	chr3R	7737449	intergenic	not near genes	chr3R_9_7730001	chr3R_7730001	RAL-790
1686	chr3R	7849629	7849677	chr3R	7850816	7850862	1360	13	1183	0.5	5.0	2.8	3.4	1233	chr3R	7849629	intron	CG34384 +	chr3R	7850246	intron	CG34384 +	chr3R	7850862	intron	CG34384 +	chr3R_13_7850001	chr3R_7850001	RAL-790
1688	chr3R	7973308	7973338	chr3R	7974390	7974419	1360	8	1082	3.5	3.5	3.5	1.8	1111	chr3R	7973308	intergenic	not near genes	chr3R	7973864	intergenic	not near genes	chr3R	7974419	3` UTR	CD98hc -	chr3R_8_7970001	chr3R_7970001	RAL-790
1692	chr3R	8090546	8090564	chr3R	8094043	8094056	297	5	3496	0.5	6.5	3.5	1.1	3510	chr3R	8090546	intergenic	CR44330 +	chr3R	8092301	intergenic	not near genes	chr3R	8094056	intergenic	CG7900 +	chr3R_5_8090001	chr3R_8090001	RAL-790
1693	chr3R	8094390	8094440	chr3R	8099715	8099765	Transpac	18	5324	3.5	5.0	4.2	3.5	5375	chr3R	8094390	intron	CG7900 +	chr3R	8097078	intron	CG7900 +	chr3R	8099765	intron	CG7900 +	chr3R_18_8095001	chr3R_8095001	RAL-790
1694	chr3R	8101751	8101785	chr3R	8104854	8104888	G2	6	3098	2.5	4.0	3.2	1.4	3137	chr3R	8101751	exon	CG7900 +	chr3R	8103320	intron	CG7900 +	chr3R	8104888	3` UTR	CG7900 +	chr3R_6_8100001	chr3R_8100001	RAL-790
1703	chr3R	8403007	8403033	chr3R	8412180	8412189	roo	8	9172	5.0	1.5	3.2	1.9	9182	chr3R	8403007	intron	CG45263 -	chr3R	8407598	intron	CG45263 -	chr3R	8412189	intron	CG45263 -	chr3R_8_8405001	chr3R_8405001	RAL-790
1705	chr3R	8570460	8570505	chr3R	8575145	8575191	HMS-Beagle	9	4670	1.0	2.0	1.5	3.6	4731	chr3R	8570460	intergenic	not near genes	chr3R	8572826	intergenic	not near genes	chr3R	8575191	intergenic	not near genes	chr3R_9_8570001	chr3R_8570001	RAL-790
1706	chr3R	8601753	8601791	chr3R	8610924	8610964	roo	11	9167	3.5	3.5	3.5	2.4	9211	chr3R	8601753	intron	5-HT2B +	chr3R	8606358	intron	5-HT2B +	chr3R	8610964	intron	5-HT2B +	chr3R_11_8605001	chr3R_8605001	RAL-790
1709	chr3R	8707359	8707380	chr3R	8709812	8709829	jockey	4	2454	1.5	2.5	2.0	1.3	2470	chr3R	8707359	intergenic	not near genes	chr3R	8708594	intergenic	not near genes	chr3R	8709829	intergenic	not near genes	chr3R_4_8705001	chr3R_8705001	RAL-790
1710	chr3R	8894863	8894898	chr3R	8896031	8896071	1360	9	1175	3.5	4.0	3.8	1.9	1208	chr3R	8894863	intron	pyd -	chr3R	8895467	intron	pyd -	chr3R	8896071	intron	pyd -	chr3R_9_8895001	chr3R_8895001	RAL-790
1719	chr3R	9278769	9278807	chr3R	9284041	9284077	Rt1a	10	5276	2.5	5.5	4.0	2.0	5308	chr3R	9278769	intergenic	not near genes	chr3R	9281423	intergenic	not near genes	chr3R	9284077	intergenic	not near genes	chr3R_10_9280001	chr3R_9280001	RAL-790
1720	chr3R	9319559	9319600	chr3R	9320014	9320054	jockey	16	452	6.5	7.5	7.0	2.0	495	chr3R	9319559	intron	CG8861 -	chr3R	9319806	intron	CG8861 -	chr3R	9320054	intron	CG8861 -	chr3R_16_9315001	chr3R_9315001	RAL-790
1721	chr3R	9361809	9361846	chr3R	9362070	9362102	pogo	15	259	4.5	8.0	6.2	2.1	293	chr3R	9361809	3` UTR	CG45050 +	chr3R	9361956	3` UTR	CG45050 +	chr3R	9362102	3` UTR	CG45050 +	chr3R_15_9360001	chr3R_9360001	RAL-790
1724	chr3R	9699959	9700002	chr3R	9700068	9700105	1360	15	105	2.0	8.0	5.0	2.5	146	chr3R	9699959	intron	Unc-115a -	chr3R	9700032	intron	Unc-115a -	chr3R	9700105	intron	Unc-115a -	chr3R_15_9700001	chr3R_9700001	RAL-790
1730	chr3R	10231769	10231814	chr3R	10237366	10237386	mdg3	21	5592	5.0	5.5	5.2	3.4	5617	chr3R	10231769	intron	CG42795 +	chr3R	10234578	intron	CG42795 +	chr3R	10237386	intron	CG42795 +	chr3R_21_10230001	chr3R_10230001	RAL-790
1731	chr3R	10255369	10255379	chr3R	10260829	10260839	I-element	5	5460	8.0	5.0	6.5	0.7	5470	chr3R	10255369	3` UTR	Sirt6 -	chr3R	10258104	intron	Sirt6 -	chr3R	10260839	exon	Sirt6 -	chr3R_5_10255001	chr3R_10255001	RAL-790
1752	chr3R	11379215	11379254	chr3R	11388390	11388429	roo	6	9175	10.0	3.0	6.5	0.8	9214	chr3R	11379215	intron	pros +	chr3R	11383822	intron	pros +	chr3R	11388429	intron	pros +	chr3R_6_11380001	chr3R_11380001	RAL-790
1760	chr3R	11841068	11841099	chr3R	11846255	11846275	BS	7	5196	1.0	4.5	2.8	1.8	5207	chr3R	11841068	intron	CG6959 -	chr3R	11843672	intron	CG6959 -	chr3R	11846275	intron	CG6959 -	chr3R_7_11840001	chr3R_11840001	RAL-790
1764	chr3R	12022864	12022912	chr3R	12025061	12025109	pogo	10	2193	2.5	3.0	2.8	2.6	2245	chr3R	12022864	intergenic	not near genes	chr3R	12023986	intergenic	not near genes	chr3R	12025109	intergenic	not near genes	chr3R_10_12020001	chr3R_12020001	RAL-790
1790	chr3R	12920144	12920177	chr3R	12925357	12925396	copia	6	5212	1.0	1.5	1.2	2.7	5252	chr3R	12920144	intron	beat-Vb +	chr3R	12922770	intron	beat-Vb +	chr3R	12925396	intron	beat-Vb +	chr3R_6_12920001	chr3R_12920001	RAL-790
1801	chr3R	13135806	13135843	chr3R	13138001	13138037	pogo	12	2194	3.5	0.5	2.0	4.0	2231	chr3R	13135806	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13136922	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13138037	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_12_13135001	chr3R_13135001	RAL-790
1802	chr3R	13143035	13143064	chr3R	13148608	13148661	mdg3	5	5588	1.5	3.0	2.2	1.6	5626	chr3R	13143035	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13145848	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R	13148661	intron,intron,intron	timeout +,2mit -,CR45109 -	chr3R_5_13145001	chr3R_13145001	RAL-790
1811	chr3R	13517208	13517253	chr3R	13520039	13520090	jockey	4	2834	4.5	0.0	2.2	1.2	2882	chr3R	13517208	intergenic	not near genes	chr3R	13518649	intergenic	not near genes	chr3R	13520090	intergenic	not near genes	chr3R_4_13515001	chr3R_13515001	RAL-790
1827	chr3R	14180792	14180835	chr3R	14185577	14185620	F-element	13	4785	5.5	2.0	3.8	2.7	4828	chr3R	14180792	intron	Dop1R1 -	chr3R	14183206	intron	Dop1R1 -	chr3R	14185620	intron	Dop1R1 -	chr3R_13_14180001	chr3R_14180001	RAL-790
1828	chr3R	14194408	14194459	chr3R	14203576	14203628	roo	19	9168	2.0	3.5	2.8	5.0	9220	chr3R	14194408	intron	Dop1R1 -	chr3R	14199018	intron	Dop1R1 -	chr3R	14203628	intron	Dop1R1 -	chr3R_19_14195001	chr3R_14195001	RAL-790
1846	chr3R	15059260	15059481	chr3R	15059473	15059569	BS	14	180	0.0	0.5	0.2	11.7	309	chr3R	15059260	intron	dpr9 -	chr3R	15059414	intron	dpr9 -	chr3R	15059569	intron	dpr9 -	chr3R_14_15055001	chr3R_15055001	RAL-790
1847	chr3R	15079787	15079819	chr3R	15080048	15080080	pogo	6	261	5.5	0.5	3.0	1.5	293	chr3R	15079787	3` UTR	CG6966 -	chr3R	15079934	3` UTR	CG6966 -	chr3R	15080080	3` UTR	CG6966 -	chr3R_6_15075001	chr3R_15075001	RAL-790
1849	chr3R	15102485	15102527	chr3R	15109760	15109802	412	10	7275	2.5	5.0	3.8	2.1	7317	chr3R	15102485	intron	CG42788 -	chr3R	15106144	intron	CG42788 -	chr3R	15109802	intron	CG42788 -	chr3R_10_15105001	chr3R_15105001	RAL-790
1851	chr3R	15132045	15132076	chr3R	15135125	15135156	Juan	16	3079	5.0	10.0	7.5	1.9	3111	chr3R	15132045	intergenic	CG42788 -	chr3R	15133600	intergenic	not near genes	chr3R	15135156	3` UTR	CG6912 -	chr3R_16_15130001	chr3R_15130001	RAL-790
1852	chr3R	15162523	15162559	chr3R	15167311	15167319	F-element	8	4783	6.0	4.0	5.0	1.3	4796	chr3R	15162523	intron	Gyc88E +	chr3R	15164921	intron	Gyc88E +	chr3R	15167319	intron	Gyc88E +	chr3R_8_15160001	chr3R_15160001	RAL-790
1855	chr3R	15601177	15601196	chr3R	15608686	15608738	412	6	7535	2.5	3.0	2.8	1.6	7561	chr3R	15601177	intergenic	not near genes	chr3R	15604958	intergenic	not near genes	chr3R	15608738	intergenic	not near genes	chr3R_6_15600001	chr3R_15600001	RAL-790
1856	chr3R	15618732	15618764	chr3R	15626226	15626241	blood	4	7490	0.0	7.0	3.5	0.9	7509	chr3R	15618732	intergenic	not near genes	chr3R	15622486	intergenic	not near genes	chr3R	15626241	intergenic	not near genes	chr3R_4_15620001	chr3R_15620001	RAL-790
1881	chr3R	17294655	17294699	chr3R	17295103	17295129	BS	10	444	1.0	2.0	1.5	4.0	474	chr3R	17294655	intergenic	not near genes	chr3R	17294892	intergenic	not near genes	chr3R	17295129	intergenic	not near genes	chr3R_10_17290001	chr3R_17290001	RAL-790
1883	chr3R	17346680	17346691	chr3R	17348263	17348274	F-element	4	1582	11.5	7.0	9.2	0.4	1594	chr3R	17346680	intron	beat-IIa -	chr3R	17347477	intron	beat-IIa -	chr3R	17348274	intron	beat-IIa -	chr3R_4_17345001	chr3R_17345001	RAL-790
1884	chr3R	17346697	17346713	chr3R	17348254	17348296	F-element	5	1578	8.0	6.0	7.0	0.6	1599	chr3R	17346697	intron	beat-IIa -	chr3R	17347496	intron	beat-IIa -	chr3R	17348296	intron	beat-IIa -	chr3R_5_17345001	chr3R_17345001	RAL-790
1896	chr3R	17638309	17638340	chr3R	17638815	17638846	roo	7	505	0.0	10.0	5.0	1.2	537	chr3R	17638309	intron	CG43175 +	chr3R	17638578	intron	CG43175 +	chr3R	17638846	intron,intron	CG43175 +,CR45222 +	chr3R_7_17635001	chr3R_17635001	RAL-790
1904	chr3R	18061569	18061605	chr3R	18063157	18063182	F-element	13	1587	4.5	6.0	5.2	2.1	1613	chr3R	18061569	intergenic	not near genes	chr3R	18062376	intergenic	not near genes	chr3R	18063182	intergenic	not near genes	chr3R_13_18060001	chr3R_18060001	RAL-790
1922	chr3R	18606491	18606532	chr3R	18610743	18610784	F-element	16	4251	4.5	8.0	6.2	2.2	4293	chr3R	18606491	intron,intron	qin +,CG14304 -	chr3R	18608638	intron,intron	qin +,CG14304 -	chr3R	18610784	intron,intron	qin +,CG14304 -	chr3R_16_18605001	chr3R_18605001	RAL-790
1957	chr3R	20109532	20109566	chr3R	20114758	20114792	copia	9	5225	2.0	5.0	3.5	2.0	5260	chr3R	20109532	intergenic	not near genes	chr3R	20112162	intergenic	not near genes	chr3R	20114792	intergenic	CG10887 +	chr3R_9_20110001	chr3R_20110001	RAL-790
1958	chr3R	20156676	20156720	chr3R	20165864	20165910	roo	10	9188	1.5	3.0	2.2	3.1	9234	chr3R	20156676	intergenic	not near genes	chr3R	20161293	intergenic	not near genes	chr3R	20165910	intergenic	not near genes	chr3R_10_20160001	chr3R_20160001	RAL-790
1963	chr3R	20245272	20245305	chr3R	20248902	20248935	F-element	12	3630	2.5	3.0	2.8	3.2	3663	chr3R	20245272	3` UTR	Nlg4 +	chr3R	20247104	intergenic	not near genes	chr3R	20248935	intergenic	not near genes	chr3R_12_20245001	chr3R_20245001	RAL-790
1966	chr3R	20266494	20266544	chr3R	20272985	20273035	Burdock	14	6488	5.0	4.0	4.5	2.5	6541	chr3R	20266494	intron	cic +	chr3R	20269764	intron	cic +	chr3R	20273035	intron	cic +	chr3R_14_20265001	chr3R_20265001	RAL-790
1968	chr3R	20330978	20331026	chr3R	20331484	20331532	roo	12	506	5.5	5.5	5.5	1.8	554	chr3R	20330978	intergenic	Sirt2 +	chr3R	20331255	intergenic	Sirt2 +	chr3R	20331532	intergenic	not near genes	chr3R_12_20330001	chr3R_20330001	RAL-790
1974	chr3R	20506573	20506609	chr3R	20507395	20507432	BS	15	820	1.0	5.5	3.2	3.6	859	chr3R	20506573	intergenic	Or92a +	chr3R	20507002	intergenic	CG4288 -	chr3R	20507432	3` UTR	CG4288 -	chr3R_15_20505001	chr3R_20505001	RAL-790
1975	chr3R	20512984	20513036	chr3R	20515707	20515756	opus	10	2723	2.5	5.0	3.8	2.1	2772	chr3R	20512984	intergenic	not near genes	chr3R	20514370	intergenic	not near genes	chr3R	20515756	intergenic	not near genes	chr3R_10_20510001	chr3R_20510001	RAL-790
2007	chr3R	21761116	21761141	chr3R	21768517	21768542	mdg1	5	7401	4.0	5.5	4.8	0.9	7426	chr3R	21761116	exon	CG42335 +	chr3R	21764829	intron	CG42335 +	chr3R	21768542	exon	CG42335 +	chr3R_5_21760001	chr3R_21760001	RAL-790
2018	chr3R	22239474	22239522	chr3R	22248554	22248590	roo	6	9074	4.0	0.0	2.0	2.0	9116	chr3R	22239474	intron	SKIP +	chr3R	22244032	intron	SKIP +	chr3R	22248590	intron	SKIP +	chr3R_6_22240001	chr3R_22240001	RAL-790
2021	chr3R	22450527	22450565	chr3R	22453187	22453221	NOF	9	2654	1.5	5.0	3.2	2.1	2694	chr3R	22450527	intron	CG34376 +	chr3R	22451874	intron	CG34376 +	chr3R	22453221	intron	CG34376 +	chr3R_9_22450001	chr3R_22450001	RAL-790
2044	chr3R	23558382	23558429	chr3R	23560179	23560199	Bari1	11	1796	2.0	4.5	3.2	2.6	1817	chr3R	23558382	intron	beat-IV +	chr3R	23559290	intron	beat-IV +	chr3R	23560199	intron	beat-IV +	chr3R_11_23555001	chr3R_23555001	RAL-790
2048	chr3R	23835389	23835432	chr3R	23844556	23844602	roo	11	9170	4.5	4.5	4.5	2.0	9213	chr3R	23835389	intron	CG34355 +	chr3R	23839996	intron	CG34355 +	chr3R	23844602	intron	CG34355 +	chr3R_11_23835001	chr3R_23835001	RAL-790
2049	chr3R	23851068	23851085	chr3R	23858755	23858772	opus	4	7687	8.0	10.0	9.0	0.4	7704	chr3R	23851068	3` UTR	CG34355 +	chr3R	23854920	intergenic	not near genes	chr3R	23858772	intergenic	not near genes	chr3R_4_23850001	chr3R_23850001	RAL-790
2054	chr3R	24072075	24072110	chr3R	24072533	24072566	jockey	8	452	1.0	6.5	3.8	1.7	491	chr3R	24072075	intron	4EHP -	chr3R	24072320	intron	4EHP -	chr3R	24072566	intron	4EHP -	chr3R_8_24070001	chr3R_24070001	RAL-790
2055	chr3R	24207233	24207239	chr3R	24212299	24212320	flea	4	5084	3.0	9.5	6.2	0.6	5087	chr3R	24207233	intron	twin -	chr3R	24209776	intron	twin -	chr3R	24212320	intron	twin -	chr3R_4_24205001	chr3R_24205001	RAL-790
2060	chr3R	24493274	24493305	chr3R	24493507	24493554	BS	6	246	4.5	4.5	4.5	1.1	280	chr3R	24493274	intergenic	not near genes	chr3R	24493414	intergenic	not near genes	chr3R	24493554	intergenic	not near genes	chr3R_6_24490001	chr3R_24490001	RAL-790
2070	chr3R	24927117	24927122	chr3R	24931927	24931932	Doc	4	4810	9.5	3.0	6.2	0.6	4815	chr3R	24927117	intergenic	Trf4-2 +	chr3R	24929524	intergenic	not near genes	chr3R	24931932	intergenic	CG11771 +	chr3R_4_24925001	chr3R_24925001	RAL-790
2071	chr3R	24927125	24927151	chr3R	24931921	24931962	Doc	11	4806	6.0	2.5	4.2	2.1	4837	chr3R	24927125	intergenic	Trf4-2 +	chr3R	24929544	intergenic	not near genes	chr3R	24931962	intergenic	CG11771 +	chr3R_11_24925001	chr3R_24925001	RAL-790
2086	chr3R	25725806	25725862	chr3R	25734986	25735042	roo	7	9178	2.5	1.0	1.8	2.5	9236	chr3R	25725806	intron	LpR2 -	chr3R	25730424	intron	LpR2 -	chr3R	25735042	intron	LpR2 -	chr3R_7_25730001	chr3R_25730001	RAL-790
2100	chr3R	26376342	26376349	chr3R	26385489	26385525	roo	5	9167	1.5	0.0	0.8	2.8	9183	chr3R	26376342	intergenic	not near genes	chr3R	26380934	intergenic	not near genes	chr3R	26385525	intergenic	not near genes	chr3R_5_26380001	chr3R_26380001	RAL-790
2103	chr3R	26510501	26510532	chr3R	26519576	26519607	roo	5	9075	3.5	3.5	3.5	1.1	9106	chr3R	26510501	intron	plum -	chr3R	26515054	intron	plum -	chr3R	26519607	intron,5` UTR	plum -,CR45226 +	chr3R_5_26515001	chr3R_26515001	RAL-790
2107	chr3R	26642711	26642731	chr3R	26643124	26643144	jockey	4	411	11.5	6.0	8.8	0.4	433	chr3R	26642711	intergenic	not near genes	chr3R	26642928	intergenic	not near genes	chr3R	26643144	intergenic	not near genes	chr3R_4_26640001	chr3R_26640001	RAL-790
2109	chr3R	26810544	26810581	chr3R	26811049	26811074	roo	17	503	5.0	4.0	4.5	3.1	530	chr3R	26810544	intron	Tl +	chr3R	26810809	intron	Tl +	chr3R	26811074	intron	Tl +	chr3R_17_26810001	chr3R_26810001	RAL-790
2112	chr3R	27007407	27007428	chr3R	27016538	27016580	roo	6	9141	5.5	4.0	4.8	1.0	9173	chr3R	27007407	intron	RYa-R +	chr3R	27011994	intron	RYa-R +	chr3R	27016580	intron	RYa-R +	chr3R_6_27010001	chr3R_27010001	RAL-790
2116	chr3R	27140500	27140543	chr3R	27148130	27148159	412	9	7622	1.5	7.0	4.2	1.7	7659	chr3R	27140500	intron	CG6051 -	chr3R	27144330	intron	CG6051 -	chr3R	27148159	intron	CG6051 -	chr3R_9_27140001	chr3R_27140001	RAL-790
2121	chr3R	27342776	27342824	chr3R	27351372	27351425	Tirant	11	8599	2.5	3.0	2.8	2.9	8649	chr3R	27342776	intron	CG42534 +	chr3R	27347100	intron	CG42534 +	chr3R	27351425	intron	CG42534 +	chr3R_11_27345001	chr3R_27345001	RAL-790
2130	chr3R	27521138	27521189	chr3R	27530366	27530417	roo	17	9227	2.5	1.5	2.0	5.7	9279	chr3R	27521138	intron	CG12885 +	chr3R	27525778	intron	CG12885 +	chr3R	27530417	intron	CG12885 +	chr3R_17_27525001	chr3R_27525001	RAL-790
2134	chr3R	27725548	27725598	chr3R	27731010	27731031	I-element	11	5459	2.5	6.0	4.2	2.1	5483	chr3R	27725548	intergenic	not near genes	chr3R	27728290	intergenic	not near genes	chr3R	27731031	intergenic	not near genes	chr3R_11_27725001	chr3R_27725001	RAL-790
2137	chr3R	27856759	27856782	chr3R	27858256	27858285	hopper2	5	1500	5.0	3.0	4.0	1.0	1526	chr3R	27856759	intron	CG34353 -	chr3R	27857522	intron	CG34353 -	chr3R	27858285	intron	CG34353 -	chr3R_5_27855001	chr3R_27855001	RAL-790
2138	chr3R	27862942	27862986	chr3R	27868262	27868271	Transpac	10	5312	1.5	2.5	2.0	3.3	5329	chr3R	27862942	intron	CG34353 -	chr3R	27865606	intron	CG34353 -	chr3R	27868271	intron	CG34353 -	chr3R_10_27865001	chr3R_27865001	RAL-790
2139	chr3R	27875682	27875729	chr3R	27882755	27882804	297	15	7073	1.0	4.5	2.8	3.9	7122	chr3R	27875682	intron	CG34353 -	chr3R	27879243	intron	CG34353 -	chr3R	27882804	intron	CG34353 -	chr3R_15_27875001	chr3R_27875001	RAL-790
2143	chr3R	28068484	28068525	chr3R	28073946	28073967	I-element	6	5456	0.0	3.5	1.8	2.1	5483	chr3R	28068484	intron	CG34362 +	chr3R	28071226	intron	CG34362 +	chr3R	28073967	intron	CG34362 +	chr3R_6_28070001	chr3R_28070001	RAL-790
2147	chr3R	28173654	28173700	chr3R	28181104	28181150	mdg1	8	7450	4.0	7.0	5.5	1.2	7496	chr3R	28173654	intron	CG34354 +	chr3R	28177402	intron	CG34354 +	chr3R	28181150	intron	CG34354 +	chr3R_8_28175001	chr3R_28175001	RAL-790
2148	chr3R	28253348	28253373	chr3R	28255862	28255893	jockey	6	2521	1.5	3.0	2.2	1.9	2545	chr3R	28253348	intergenic	not near genes	chr3R	28254620	intergenic	not near genes	chr3R	28255893	intergenic	not near genes	chr3R_6_28250001	chr3R_28250001	RAL-790
2149	chr3R	28302097	28302114	chr3R	28302549	28302576	jockey	7	458	6.5	8.0	7.2	0.9	479	chr3R	28302097	intergenic	not near genes	chr3R	28302336	intergenic	not near genes	chr3R	28302576	intergenic	not near genes	chr3R_7_28300001	chr3R_28300001	RAL-790
2161	chr3R	28763901	28763916	chr3R	28771364	28771375	Stalker4	5	7461	0.0	8.0	4.0	1.0	7474	chr3R	28763901	intergenic	not near genes	chr3R	28767638	intergenic	not near genes	chr3R	28771375	intergenic	not near genes	chr3R_5_28765001	chr3R_28765001	RAL-790
2170	chr3R	29079373	29079410	chr3R	29080765	29080802	NOF	9	1390	2.5	3.5	3.0	2.2	1429	chr3R	29079373	intron	CG11873 +	chr3R	29080088	intron	CG11873 +	chr3R	29080802	intron	CG11873 +	chr3R_9_29080001	chr3R_29080001	RAL-790
2176	chr3R	29319808	29319851	chr3R	29320147	29320174	jockey	7	337	2.0	2.0	2.0	2.3	366	chr3R	29319808	intergenic	Cnx99A -	chr3R	29319991	intergenic	Cnx99A -	chr3R	29320174	intergenic	not near genes	chr3R_7_29315001	chr3R_29315001	RAL-790
2186	chr3R	29738274	29738296	chr3R	29739762	29739769	hobo	6	1482	3.5	2.0	2.8	1.6	1495	chr3R	29738274	5` UTR	CG1969 +	chr3R	29739022	intron	CG1969 +	chr3R	29739769	5` UTR	CG1969 +	chr3R_6_29735001	chr3R_29735001	RAL-790
2189	chr3R	29882018	29882051	chr3R	29891174	29891228	roo	12	9170	4.0	6.5	5.2	1.9	9210	chr3R	29882018	intron	CG31038 +	chr3R	29886623	intron	CG31038 +	chr3R	29891228	intron	CG31038 +	chr3R_12_29885001	chr3R_29885001	RAL-790
2193	chr3R	30084856	30084878	chr3R	30086322	30086349	hobo	7	1481	1.0	2.0	1.5	2.8	1493	chr3R	30084856	intron	sima +	chr3R	30085602	intron	sima +	chr3R	30086349	intron	sima +	chr3R_7_30085001	chr3R_30085001	RAL-790
2198	chr3R	30396207	30396242	chr3R	30404493	30404527	roo	9	8285	3.0	2.5	2.8	2.4	8320	chr3R	30396207	intergenic	not near genes	chr3R	30400367	intergenic	not near genes	chr3R	30404527	5` UTR	CR45570 +	chr3R_9_30400001	chr3R_30400001	RAL-790
2202	chr3R	30480474	30480506	chr3R	30482945	30482994	jockey	11	2484	0.5	2.5	1.5	4.4	2520	chr3R	30480474	intron	PH4alphaEFB +	chr3R	30481734	intron	PH4alphaEFB +	chr3R	30482994	intron	PH4alphaEFB +	chr3R_11_30480001	chr3R_30480001	RAL-790
2208	chr3R	30679501	30679552	chr3R	30686990	30687040	blood	11	7485	2.0	5.0	3.5	2.4	7539	chr3R	30679501	intergenic	not near genes	chr3R	30683270	intergenic	not near genes	chr3R	30687040	intergenic	not near genes	chr3R_11_30680001	chr3R_30680001	RAL-790
2211	chr3R	30818793	30818840	chr3R	30820378	30820424	1360	20	1584	3.0	3.5	3.2	4.8	1631	chr3R	30818793	intron	cindr +	chr3R	30819608	intron	cindr +	chr3R	30820424	intron	cindr +	chr3R_20_30815001	chr3R_30815001	RAL-790
2215	chr3R	31074209	31074250	chr3R	31081827	31081838	springer	4	7610	2.0	1.0	1.5	1.6	7629	chr3R	31074209	intron	Sox100B +	chr3R	31078024	intron	Sox100B +	chr3R	31081838	intron	Sox100B +	chr3R_4_31075001	chr3R_31075001	RAL-790
2218	chr3R	31279354	31279401	chr3R	31285565	31285612	diver	8	6201	3.0	1.0	2.0	2.7	6258	chr3R	31279354	intergenic	not near genes	chr3R	31282483	intergenic	not near genes	chr3R	31285612	intergenic	not near genes	chr3R_8_31280001	chr3R_31280001	RAL-790
2220	chr3R	31413110	31413123	chr3R	31418314	31418318	copia	4	5201	1.5	3.5	2.5	1.1	5208	chr3R	31413110	intron	Gprk2 +	chr3R	31415714	intron	Gprk2 +	chr3R	31418318	intron	Gprk2 +	chr3R_4_31415001	chr3R_31415001	RAL-790
2227	chr3R	31691515	31691540	chr3R	31696301	31696319	Doc	8	4783	2.5	4.0	3.2	1.9	4804	chr3R	31691515	intergenic	not near genes	chr3R	31693917	intergenic	not near genes	chr3R	31696319	intergenic	not near genes	chr3R_8_31690001	chr3R_31690001	RAL-790
2232	chr3R	31997973	31998020	chr3R	32005462	32005510	blood	11	7488	4.0	3.5	3.8	2.3	7537	chr3R	31997973	intron	heph -	chr3R	32001742	intron	heph -	chr3R	32005510	intron	heph -	chr3R_11_32000001	chr3R_32000001	RAL-790
2234	chr4	76474	76490	chr4	81937	81953	I-element	4	5463	4.0	2.0	3.0	1.0	5479	chr4	76474	intron	pan +	chr4	79214	intron	pan +	chr4	81953	intron	pan +	chr4_4_75001	chr4_75001	RAL-790
2235	chr4	319974	320020	chr4	328169	328216	Stalker2	10	8196	3.5	3.0	3.2	2.4	8242	chr4	319974	3` UTR	CG32850 +	chr4	324095	intron	CG32850 +	chr4	328216	3` UTR,3` UTR	CG32850 +,PMCA -	chr4_10_320001	chr4_320001	RAL-790
2236	chr4	671583	671635	chr4	680186	680206	Tirant	8	8595	4.0	4.5	4.2	1.5	8623	chr4	671583	intron	CG11360 +	chr4	675894	intron	CG11360 +	chr4	680206	intron	CG11360 +	chr4_8_675001	chr4_675001	RAL-790
2241	chrX	295859	295876	chrX	303491	303516	412	4	7633	3.5	5.5	4.5	0.7	7657	chrX	295859	intron	CG3777 +	chrX	299688	intron	CG3777 +	chrX	303516	intron	CG3777 +	chrX_4_295001	chrX_295001	RAL-790
2242	chrX	318453	318474	chrX	323559	323580	flea	5	5106	8.5	3.5	6.0	0.7	5127	chrX	318453	intron,intron	CG3777 +,CG32816 -	chrX	321016	intron,intron	CG3777 +,CG32816 -	chrX	323580	intron,intron	CG3777 +,CG32816 -	chrX_5_320001	chrX_320001	RAL-790
2243	chrX	318475	318501	chrX	323555	323600	flea	13	5100	5.0	3.5	4.2	2.5	5125	chrX	318475	intron,intron	CG3777 +,CG32816 -	chrX	321038	intron,intron	CG3777 +,CG32816 -	chrX	323600	intron,intron	CG3777 +,CG32816 -	chrX_13_320001	chrX_320001	RAL-790
2245	chrX	428404	428438	chrX	434609	434643	3S18	10	6205	4.5	5.0	4.8	1.7	6239	chrX	428404	intron	CG32816 -	chrX	431524	intron	CG32816 -	chrX	434643	intron	CG32816 -	chrX_10_430001	chrX_430001	RAL-790
2247	chrX	551424	551452	chrX	558989	559034	412	6	7571	2.0	6.0	4.0	1.2	7610	chrX	551424	intron	Appl +	chrX	555229	intron	Appl +	chrX	559034	intron	Appl +	chrX_6_555001	chrX_555001	RAL-790
2250	chrX	812251	812295	chrX	817902	817927	297	8	5646	3.5	3.5	3.5	1.8	5676	chrX	812251	intron	CG43867 -	chrX	815089	intron	CG43867 -	chrX	817927	intron	CG43867 -	chrX_8_815001	chrX_815001	RAL-790
2251	chrX	827592	827631	chrX	835394	835442	roo	11	7808	3.5	2.5	3.0	2.8	7850	chrX	827592	intron	CG43867 -	chrX	831517	intron	CG43867 -	chrX	835442	intron	CG43867 -	chrX_11_830001	chrX_830001	RAL-790
2252	chrX	906689	906726	chrX	908494	908522	S-element	6	1806	3.0	4.0	3.5	1.3	1833	chrX	906689	intron	CG43867 -	chrX	907606	intron	CG43867 -	chrX	908522	intron	CG43867 -	chrX_6_905001	chrX_905001	RAL-790
2256	chrX	1357763	1357801	chrX	1367949	1367990	Doc	10	10187	3.0	3.0	3.0	2.5	10227	chrX	1357763	intergenic	png -	chrX	1362876	intergenic	not near genes	chrX	1367990	intergenic	not near genes	chrX_10_1360001	chrX_1360001	RAL-790
2257	chrX	1518036	1518065	chrX	1523445	1523487	jockey	7	5412	1.0	4.0	2.5	2.0	5451	chrX	1518036	intergenic	inc +	chrX	1520762	intergenic	not near genes	chrX	1523487	intergenic	not near genes	chrX_7_1520001	chrX_1520001	RAL-790
2260	chrX	1930529	1930569	chrX	1938107	1938160	opus	12	7582	4.5	1.5	3.0	3.0	7631	chrX	1930529	intergenic	CG11596 +	chrX	1934344	intergenic	not near genes	chrX	1938160	3` UTR	CG3857 -	chrX_12_1930001	chrX_1930001	RAL-790
2263	chrX	2399823	2399870	chrX	2408188	2408204	roo	8	8364	1.5	2.0	1.8	2.9	8381	chrX	2399823	intergenic	not near genes	chrX	2404014	intergenic	not near genes	chrX	2408204	intergenic	not near genes	chrX_8_2400001	chrX_2400001	RAL-790
2270	chrX	2610367	2610415	chrX	2617504	2617552	HMS-Beagle	7	7131	2.0	2.0	2.0	2.3	7185	chrX	2610367	intergenic	CG8636 -	chrX	2613960	intergenic	not near genes	chrX	2617552	intergenic	Tsp3A -	chrX_7_2610001	chrX_2610001	RAL-790
2274	chrX	3218499	3218538	chrX	3227668	3227706	roo	4	9169	2.5	3.5	3.0	1.0	9207	chrX	3218499	intron	dnc +	chrX	3223102	intron	dnc +	chrX	3227706	intron	dnc +	chrX_4_3220001	chrX_3220001	RAL-790
2278	chrX	3415024	3415045	chrX	3421229	3421249	3S18	9	6204	2.5	3.5	3.0	2.2	6225	chrX	3415024	intron,intron	CR44999 +,CG12535 -	chrX	3418136	intron,intron	CR44999 +,CG12535 -	chrX	3421249	intron,intron	CR44999 +,CG12535 -	chrX_9_3415001	chrX_3415001	RAL-790
2279	chrX	3493075	3493114	chrX	3502253	3502256	roo	8	9174	1.5	1.5	1.5	3.2	9181	chrX	3493075	intron,intron	CR44999 +,Gas8 -	chrX	3497666	intron,intron	CR44999 +,Gas8 -	chrX	3502256	intron,intron	CR44999 +,Gas8 -	chrX_8_3495001	chrX_3495001	RAL-790
2280	chrX	3597544	3597581	chrX	3619732	3619744	roo	14	22186	3.5	2.0	2.8	3.7	22200	chrX	3597544	intron	AstA-R1 +	chrX	3608644	intron	AstA-R1 +	chrX	3619744	intron	AstA-R1 +	chrX_14_3605001	chrX_3605001	RAL-790
2283	chrX	3726749	3726785	chrX	3730165	3730202	NOF	5	3412	2.0	2.5	2.2	1.6	3453	chrX	3726749	intron	tlk +	chrX	3728476	intron	tlk +	chrX	3730202	intron	tlk +	chrX_5_3725001	chrX_3725001	RAL-790
2285	chrX	3842334	3842348	chrX	3842572	3842586	pogo	6	238	3.5	4.5	4.0	1.2	252	chrX	3842334	intron	ec +	chrX	3842460	intron	ec +	chrX	3842586	intron	ec +	chrX_6_3840001	chrX_3840001	RAL-790
2291	chrX	3986846	3986877	chrX	3994498	3994530	412	7	7652	4.5	3.5	4.0	1.4	7684	chrX	3986846	intergenic	not near genes	chrX	3990688	intergenic	not near genes	chrX	3994530	intergenic	not near genes	chrX_7_3990001	chrX_3990001	RAL-790
2292	chrX	3986878	3986885	chrX	3994495	3994538	412	4	7644	4.0	2.5	3.2	1.0	7660	chrX	3986878	intergenic	not near genes	chrX	3990708	intergenic	not near genes	chrX	3994538	intergenic	not near genes	chrX_4_3990001	chrX_3990001	RAL-790
2296	chrX	4157879	4157918	chrX	4164952	4164991	297	4	7072	1.5	1.5	1.5	1.6	7112	chrX	4157879	intron	Fas2 -	chrX	4161435	intron	Fas2 -	chrX	4164991	intron	Fas2 -	chrX_4_4160001	chrX_4160001	RAL-790
2307	chrX	4700396	4700419	chrX	4700734	4700782	jockey	10	357	1.0	3.0	2.0	3.3	386	chrX	4700396	3` UTR	ctp +	chrX	4700589	3` UTR	ctp +	chrX	4700782	3` UTR	ctp +	chrX_10_4700001	chrX_4700001	RAL-790
2308	chrX	4731801	4731807	chrX	4736914	4736920	jockey	5	5113	3.5	5.0	4.2	1.0	5119	chrX	4731801	intergenic	not near genes	chrX	4734360	intergenic	not near genes	chrX	4736920	intergenic	not near genes	chrX_5_4730001	chrX_4730001	RAL-790
2309	chrX	4763245	4763282	chrX	4763749	4763790	Stalker4	4	506	1.5	4.5	3.0	1.0	545	chrX	4763245	intergenic	not near genes	chrX	4763518	intergenic	not near genes	chrX	4763790	intergenic	not near genes	chrX_4_4760001	chrX_4760001	RAL-790
2311	chrX	4827965	4827997	chrX	4835339	4835375	Stalker4	6	7371	1.5	1.0	1.2	2.7	7410	chrX	4827965	intergenic	not near genes	chrX	4831670	intergenic	not near genes	chrX	4835375	intergenic	not near genes	chrX_6_4830001	chrX_4830001	RAL-790
2317	chrX	4990022	4990075	chrX	4997255	4997306	roo	10	7234	2.0	0.5	1.2	4.5	7284	chrX	4990022	intron	CR44833 -	chrX	4993664	intron	CR44833 -	chrX	4997306	intron	CR44833 -	chrX_10_4990001	chrX_4990001	RAL-790
2318	chrX	5096254	5096301	chrX	5103839	5103885	springer	10	7584	2.0	4.5	3.2	2.4	7631	chrX	5096254	intron,intron	CG15465 +,rg +	chrX	5100070	intron,intron	CG15465 +,rg +	chrX	5103885	intron,intron	CG15465 +,rg +	chrX_10_5100001	chrX_5100001	RAL-790
2326	chrX	5524823	5524857	chrX	5528706	5528740	412	11	3882	6.0	1.5	3.8	2.3	3917	chrX	5524823	intergenic	snoRNA:Psi28S-3342 -	chrX	5526782	intergenic	not near genes	chrX	5528740	intergenic	Vsx2 -	chrX_11_5525001	chrX_5525001	RAL-790
2327	chrX	5883793	5883841	chrX	5884053	5884101	pogo	8	257	3.5	4.0	3.8	1.7	308	chrX	5883793	intron	CR45668 -	chrX	5883947	intron	CR45668 -	chrX	5884101	intron	CR45668 -	chrX_8_5880001	chrX_5880001	RAL-790
2328	chrX	5884163	5884193	chrX	5884406	5884454	pogo	7	258	1.5	1.5	1.5	2.8	291	chrX	5884163	intron	CR45668 -	chrX	5884308	intron	CR45668 -	chrX	5884454	intron	CR45668 -	chrX_7_5880001	chrX_5880001	RAL-790
2333	chrX	6171565	6171609	chrX	6179018	6179062	Quasimodo	8	7449	3.0	1.5	2.2	2.5	7497	chrX	6171565	intron	Ca-alpha1T -	chrX	6175314	intron	Ca-alpha1T -	chrX	6179062	intron	Ca-alpha1T -	chrX_8_6175001	chrX_6175001	RAL-790
2338	chrX	6562818	6562846	chrX	6571300	6571346	Tirant	7	8491	3.0	5.0	4.0	1.4	8528	chrX	6562818	intron	CG34417 +	chrX	6567082	intron	CG34417 +	chrX	6571346	intron	CG34417 +	chrX_7_6565001	chrX_6565001	RAL-790
2345	chrX	7023598	7023630	chrX	7031008	7031033	Tabor	7	7407	4.5	3.0	3.8	1.5	7435	chrX	7023598	intron	CG12541 -	chrX	7027316	intron	CG12541 -	chrX	7031033	intron	CG12541 -	chrX_7_7025001	chrX_7025001	RAL-790
2346	chrX	7125226	7125278	chrX	7134405	7134449	roo	12	9178	0.5	6.5	3.5	2.7	9223	chrX	7125226	intergenic	not near genes	chrX	7129838	intergenic	not near genes	chrX	7134449	intergenic	not near genes	chrX_12_7125001	chrX_7125001	RAL-790
2349	chrX	7702904	7702926	chrX	7703363	7703385	jockey	7	457	4.0	8.5	6.2	1.0	481	chrX	7702904	intron	CHES-1-like -	chrX	7703144	intron	CHES-1-like -	chrX	7703385	intron	CHES-1-like -	chrX_7_7700001	chrX_7700001	RAL-790
2351	chrX	7845705	7845747	chrX	7847216	7847227	hopper2	5	1504	3.5	3.0	3.2	1.2	1522	chrX	7845705	intergenic	not near genes	chrX	7846466	intergenic	not near genes	chrX	7847227	intergenic	not near genes	chrX_5_7845001	chrX_7845001	RAL-790
2353	chrX	8031433	8031450	chrX	8035762	8035779	Juan	8	4328	3.0	3.0	3.0	2.0	4346	chrX	8031433	intergenic	not near genes	chrX	8033606	intergenic	not near genes	chrX	8035779	3` UTR	CG2233 -	chrX_8_8030001	chrX_8030001	RAL-790
2356	chrX	8364844	8364877	chrX	8365261	8365291	BS	11	416	2.0	6.0	4.0	2.2	447	chrX	8364844	intron	nAChRalpha3 -	chrX	8365068	intron	nAChRalpha3 -	chrX	8365291	intron	nAChRalpha3 -	chrX_11_8365001	chrX_8365001	RAL-790
2359	chrX	8922354	8922362	chrX	8922757	8922800	jockey	6	433	2.0	3.0	2.5	1.7	446	chrX	8922354	intron	rdgA +	chrX	8922577	intron	rdgA +	chrX	8922800	intron	rdgA +	chrX_6_8920001	chrX_8920001	RAL-790
2360	chrX	8948736	8948783	chrX	8956266	8956313	roo	9	7530	0.5	2.5	1.5	3.6	7577	chrX	8948736	intron	rdgA +	chrX	8952524	intron	rdgA +	chrX	8956313	intron	rdgA +	chrX_9_8950001	chrX_8950001	RAL-790
2365	chrX	9508120	9508156	chrX	9509658	9509694	jockey	7	1538	5.0	2.5	3.8	1.5	1574	chrX	9508120	intron	CG32700 -	chrX	9508907	intron	CG32700 -	chrX	9509694	intron	CG32700 -	chrX_7_9505001	chrX_9505001	RAL-790
2366	chrX	9575790	9575817	chrX	9576117	9576161	mdg3	5	329	2.0	7.0	4.5	0.9	371	chrX	9575790	intron,exon	CG32699 -,CG42395 -	chrX	9575976	intron,intron	CG32699 -,CG42395 -	chrX	9576161	intron,5` UTR	CG32699 -,CG42395 -	chrX_5_9575001	chrX_9575001	RAL-790
2370	chrX	10138198	10138248	chrX	10145722	10145772	412	13	7522	2.5	2.5	2.5	3.7	7574	chrX	10138198	intron,intron	RhoU +,CR44894 -	chrX	10141985	intron,intron	RhoU +,CR44894 -	chrX	10145772	intron,intron	RhoU +,CR44894 -	chrX_13_10140001	chrX_10140001	RAL-790
2372	chrX	10267297	10267332	chrX	10276467	10276502	roo	4	9170	1.0	1.5	1.2	1.8	9205	chrX	10267297	3` UTR	alpha-Man-I -	chrX	10271900	intron	alpha-Man-I -	chrX	10276502	3` UTR	alpha-Man-I -	chrX_4_10270001	chrX_10270001	RAL-790
2374	chrX	10348782	10348829	chrX	10356367	10356390	springer	6	7578	2.0	2.5	2.2	1.9	7608	chrX	10348782	intergenic	snoRNA:U3:9B +	chrX	10352586	intergenic	not near genes	chrX	10356390	intergenic	l(1)G0289 -	chrX_6_10350001	chrX_10350001	RAL-790
2377	chrX	10550849	10550868	chrX	10552326	10552329	hobo	4	1478	3.0	1.5	2.2	1.2	1480	chrX	10550849	intron	spri -	chrX	10551589	intron	spri -	chrX	10552329	intron	spri -	chrX_4_10550001	chrX_10550001	RAL-790
2378	chrX	10686035	10686079	chrX	10691187	10691236	roo	11	5155	5.5	4.5	5.0	1.8	5201	chrX	10686035	intron	X11Lbeta +	chrX	10688636	intron	X11Lbeta +	chrX	10691236	intron	X11Lbeta +	chrX_11_10685001	chrX_10685001	RAL-790
2384	chrX	11095980	11096024	chrX	11103102	11103144	HMS-Beagle	13	7121	4.0	7.0	5.5	2.0	7164	chrX	11095980	intergenic	not near genes	chrX	11099562	intergenic	not near genes	chrX	11103144	intron	CG42249 +	chrX_13_11095001	chrX_11095001	RAL-790
2387	chrX	11184226	11184251	chrX	11189325	11189348	flea	4	5097	1.5	0.5	1.0	2.0	5122	chrX	11184226	intergenic	not near genes	chrX	11186787	intergenic	not near genes	chrX	11189348	intergenic	not near genes	chrX_4_11185001	chrX_11185001	RAL-790
2392	chrX	11312051	11312092	chrX	11319424	11319438	Stalker2	5	7358	4.0	3.5	3.8	1.0	7387	chrX	11312051	intergenic	not near genes	chrX	11315744	intergenic	not near genes	chrX	11319438	intergenic	not near genes	chrX_5_11315001	chrX_11315001	RAL-790
2396	chrX	11633396	11633448	chrX	11640470	11640522	297	18	7072	4.0	1.5	2.8	4.7	7126	chrX	11633396	intron	Ptp10D +	chrX	11636959	intron	Ptp10D +	chrX	11640522	intron	Ptp10D +	chrX_18_11635001	chrX_11635001	RAL-790
2402	chrX	12168130	12168162	chrX	12173592	12173593	I-element	4	5454	1.5	1.5	1.5	1.6	5463	chrX	12168130	intron	Ten-a +	chrX	12170862	intron	Ten-a +	chrX	12173593	intron	Ten-a +	chrX_4_12170001	chrX_12170001	RAL-790
2407	chrX	12930576	12930601	chrX	12937712	12937737	HMS-Beagle	8	7134	3.5	5.0	4.2	1.5	7161	chrX	12930576	intron	fne +	chrX	12934156	intron	fne +	chrX	12937737	intron	fne +	chrX_8_12930001	chrX_12930001	RAL-790
2419	chrX	13401469	13401481	chrX	13401836	13401853	jockey	5	371	0.5	1.5	1.0	2.5	384	chrX	13401469	intergenic	CG1673 +,CG12725 -	chrX	13401661	intergenic	CG12725 -,CG1673 +	chrX	13401853	3` UTR	CG12725 -	chrX_5_13400001	chrX_13400001	RAL-790
2420	chrX	13429455	13429493	chrX	13430622	13430660	jockey	13	1167	3.5	4.0	3.8	2.7	1205	chrX	13429455	intergenic	not near genes	chrX	13430058	intergenic	not near genes	chrX	13430660	intergenic	not near genes	chrX_13_13430001	chrX_13430001	RAL-790
2421	chrX	13463628	13463675	chrX	13469225	13469265	mdg3	22	5595	3.5	8.0	5.8	3.2	5637	chrX	13463628	intron	Neto +	chrX	13466446	intron	Neto +	chrX	13469265	intron	Neto +	chrX_22_13465001	chrX_13465001	RAL-790
2424	chrX	13937970	13938008	chrX	13941250	13941299	I-element	4	3283	1.0	1.5	1.2	1.8	3329	chrX	13937970	intron	mamo -	chrX	13939634	intron	mamo -	chrX	13941299	intron	mamo -	chrX_4_13935001	chrX_13935001	RAL-790
2425	chrX	14105014	14105029	chrX	14114185	14114200	roo	5	9170	4.5	1.5	3.0	1.2	9186	chrX	14105014	intergenic	not near genes	chrX	14109607	intergenic	not near genes	chrX	14114200	5` UTR	CR44657 +	chrX_5_14105001	chrX_14105001	RAL-790
2427	chrX	14157575	14157597	chrX	14163251	14163274	297	6	5677	8.5	2.0	5.2	1.0	5699	chrX	14157575	intergenic	not near genes	chrX	14160424	intergenic	not near genes	chrX	14163274	intergenic	not near genes	chrX_6_14160001	chrX_14160001	RAL-790
2435	chrX	14416284	14416306	chrX	14421072	14421094	F-element	7	4786	3.0	1.5	2.2	2.2	4810	chrX	14416284	intron	dpr8 +	chrX	14418689	intron	dpr8 +	chrX	14421094	intron	dpr8 +	chrX_7_14415001	chrX_14415001	RAL-790
2437	chrX	14636446	14636493	chrX	14641907	14641929	I-element	8	5456	1.0	4.0	2.5	2.3	5483	chrX	14636446	intron	NetA -	chrX	14639188	intron	NetA -	chrX	14641929	intron	NetA -	chrX_8_14635001	chrX_14635001	RAL-790
2438	chrX	14778016	14778052	chrX	14782833	14782869	Doc	10	4816	4.5	3.5	4.0	2.0	4853	chrX	14778016	intergenic	CG5347 +	chrX	14780442	intergenic	not near genes	chrX	14782869	intergenic	Ag5r2 -	chrX_10_14780001	chrX_14780001	RAL-790
2439	chrX	14936842	14936888	chrX	14946119	14946165	roo	16	9276	4.5	2.0	3.2	3.8	9323	chrX	14936842	intron	pdgy -	chrX	14941504	intron	pdgy -	chrX	14946165	intron	pdgy -	chrX_16_14940001	chrX_14940001	RAL-790
2444	chrX	15413041	15413082	chrX	15417358	15417370	Juan	4	4311	1.5	0.0	0.8	2.2	4329	chrX	15413041	intron	Cngl -	chrX	15415206	intron	Cngl -	chrX	15417370	intron	Cngl -	chrX_4_15415001	chrX_15415001	RAL-790
2445	chrX	15435688	15435703	chrX	15436138	15436156	rover	6	450	1.0	3.5	2.2	1.9	468	chrX	15435688	intron	Cngl -	chrX	15435922	intron	Cngl -	chrX	15436156	intron	Cngl -	chrX_6_15435001	chrX_15435001	RAL-790
2452	chrX	16222772	16222784	chrX	16231142	16231154	roo	5	8370	5.5	5.5	5.5	0.8	8382	chrX	16222772	intergenic	not near genes	chrX	16226963	intergenic	not near genes	chrX	16231154	intergenic	not near genes	chrX_5_16225001	chrX_16225001	RAL-790
2453	chrX	16222786	16222810	chrX	16231141	16231180	roo	5	8366	2.5	5.5	4.0	1.0	8394	chrX	16222786	intergenic	not near genes	chrX	16226983	intergenic	not near genes	chrX	16231180	intergenic	not near genes	chrX_5_16225001	chrX_16225001	RAL-790
2458	chrX	16492625	16492667	chrX	16498222	16498263	mdg3	16	5596	6.5	4.5	5.5	2.5	5638	chrX	16492625	intron	para -	chrX	16495444	intron	para -	chrX	16498263	intron	para -	chrX_16_16495001	chrX_16495001	RAL-790
2464	chrX	17057921	17057945	chrX	17058180	17058206	pogo	4	260	4.0	4.5	4.2	0.8	285	chrX	17057921	intron	CG45002 -	chrX	17058064	intron	CG45002 -	chrX	17058206	intron	CG45002 -	chrX_4_17055001	chrX_17055001	RAL-790
2466	chrX	17195192	17195228	chrX	17200298	17200334	flea	6	5106	4.0	1.0	2.5	1.7	5142	chrX	17195192	3` UTR	baz +	chrX	17197763	3` UTR	baz +	chrX	17200334	3` UTR	baz +	chrX_6_17195001	chrX_17195001	RAL-790
2480	chrX	17792934	17792982	chrX	17796252	17796270	flea	5	3312	1.5	1.5	1.5	2.0	3336	chrX	17792934	intron	OdsH +	chrX	17794602	intron	OdsH +	chrX	17796270	intron	OdsH +	chrX_5_17790001	chrX_17790001	RAL-790
2485	chrX	18194060	18194102	chrX	18194613	18194627	BS	12	548	4.0	3.5	3.8	2.5	567	chrX	18194060	intron	Frq2 +	chrX	18194344	intron	Frq2 +	chrX	18194627	intron	Frq2 +	chrX_12_18190001	chrX_18190001	RAL-790
2488	chrX	18429478	18429522	chrX	18434809	18434853	Transpac	13	5329	4.0	6.5	5.2	2.1	5375	chrX	18429478	intergenic	not near genes	chrX	18432166	intergenic	not near genes	chrX	18434853	intergenic	not near genes	chrX_13_18430001	chrX_18430001	RAL-790
2497	chrX	18957074	18957100	chrX	18965757	18965783	roo	5	8683	4.0	4.0	4.0	1.0	8709	chrX	18957074	intron	CG43759 +	chrX	18961428	intron	CG43759 +	chrX	18965783	intron	CG43759 +	chrX_5_18960001	chrX_18960001	RAL-790
2500	chrX	19060391	19060438	chrX	19065195	19065242	Doc	8	4804	5.0	2.0	3.5	1.8	4851	chrX	19060391	intron	CG14190 +	chrX	19062816	intron	CG14190 +	chrX	19065242	intron	CG14190 +	chrX_8_19060001	chrX_19060001	RAL-790
2515	chrX	19356967	19356994	chrX	19358428	19358455	NOF	11	1461	6.5	0.0	3.2	2.6	1488	chrX	19356967	intron	kek5 +	chrX	19357711	intron	kek5 +	chrX	19358455	intron	kek5 +	chrX_11_19355001	chrX_19355001	RAL-790
2516	chrX	19380137	19380184	chrX	19380396	19380445	pogo	15	258	6.0	2.5	4.2	2.9	308	chrX	19380137	intron	kek5 +	chrX	19380291	intron	kek5 +	chrX	19380445	intron	kek5 +	chrX_15_19380001	chrX_19380001	RAL-790
2517	chrX	19472110	19472155	chrX	19472695	19472736	jockey	4	586	0.0	2.0	1.0	2.0	626	chrX	19472110	intergenic	kek5 +	chrX	19472423	intergenic	not near genes	chrX	19472736	intergenic	not near genes	chrX_4_19470001	chrX_19470001	RAL-790
2521	chrX	19710059	19710093	chrX	19711863	19711899	S-element	7	1801	1.5	2.0	1.8	2.5	1840	chrX	19710059	intron	meso18E -	chrX	19710979	intron	meso18E -	chrX	19711899	intron	meso18E -	chrX_7_19710001	chrX_19710001	RAL-790
2538	chrX	20504108	20504156	chrX	20505648	20505664	transib2	13	1533	2.0	3.0	2.5	3.7	1556	chrX	20504108	intron	RhoGAP19D -	chrX	20504886	intron	RhoGAP19D -	chrX	20505664	intron	RhoGAP19D -	chrX_13_20500001	chrX_20500001	RAL-790
2548	chrX	20940715	20940750	chrX	20942195	20942212	hobo	9	1483	2.5	4.0	3.2	2.1	1497	chrX	20940715	intergenic	not near genes	chrX	20941464	intergenic	not near genes	chrX	20942212	intergenic	not near genes	chrX_9_20940001	chrX_20940001	RAL-790
2551	chrX	21061861	21061889	chrX	21062362	21062395	roo	9	505	2.0	4.0	3.0	2.2	534	chrX	21061861	intron	bves +	chrX	21062128	intron	bves +	chrX	21062395	intron,3` UTR	bves +,CG32512 -	chrX_9_21060001	chrX_21060001	RAL-790
2553	chrX	21086115	21086159	chrX	21087164	21087208	jockey	15	1048	5.0	5.5	5.2	2.4	1093	chrX	21086115	intergenic	not near genes	chrX	21086662	intergenic	not near genes	chrX	21087208	intergenic	not near genes	chrX_15_21085001	chrX_21085001	RAL-790
2562	chrX	21458682	21458714	chrX	21464138	21464169	Ivk	13	5455	8.0	6.5	7.2	1.6	5487	chrX	21458682	intergenic	not near genes	chrX	21461426	intergenic	not near genes	chrX	21464169	intergenic	not near genes	chrX_13_21460001	chrX_21460001	RAL-790
2569	chrX	22564564	22564581	chrX	22575116	22575133	jockey	5	10552	9.5	7.0	8.2	0.5	10569	chrX	22564564	intergenic	not near genes	chrX	22569848	intergenic	not near genes	chrX	22575133	intergenic	not near genes	chrX_5_22565001	chrX_22565001	RAL-790
2572	chrX	22697478	22697516	chrX	22701795	22701833	Juan	9	4316	6.5	2.5	4.5	1.6	4355	chrX	22697478	intron	CR44997 +	chrX	22699656	intron	CR44997 +	chrX	22701833	intron	CR44997 +	chrX_9_22695001	chrX_22695001	RAL-790
2573	chrX	22771491	22771538	chrX	22774801	22774849	297	8	3309	2.5	0.5	1.5	3.2	3358	chrX	22771491	intron	CR44997 +	chrX	22773170	intron	CR44997 +	chrX	22774849	intron	CR44997 +	chrX_8_22770001	chrX_22770001	RAL-790
2576	chrX	22811981	22812003	chrX	22816773	22816795	F-element	7	4792	7.0	3.5	5.2	1.1	4814	chrX	22811981	intergenic	CG12446 -	chrX	22814388	intergenic	not near genes	chrX	22816795	intergenic	not near genes	chrX_7_22810001	chrX_22810001	RAL-790
2581	chrX	22967370	22967492	chrX	23154541	23154687	diver	6	187175	2.0	10.5	6.2	0.8	187317	chrX	22967370	intergenic	not near genes	chrX	23061028	intergenic	not near genes	chrX	23154687	intergenic	not near genes	chrX_6_23060001	chrX_23060001	RAL-790
2582	chrX	22996309	22996337	chrX	23003545	23003591	roo	9	7250	4.0	7.5	5.8	1.3	7282	chrX	22996309	intron,intron	stnA -,stnB -	chrX	22999950	intron,intron	stnA -,stnB -	chrX	23003591	intron,intron	stnA -,stnB -	chrX_9_22995001	chrX_22995001	RAL-790