SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47463 47482 chr2L 52568 52586 jockey 4 5102 2.5 6.0 4.2 0.8 5123 chr2L 47463 intron Cda5 - chr2L 50024 intron Cda5 - chr2L 52586 intron Cda5 - chr2L_4_50001 chr2L_50001 RAL-787 2 chr2L 263300 263329 chr2L 263446 263475 10 145 3.5 2.0 2.8 2.6 175 chr2L 263300 intron,3` UTR CG3645 -,CG17075 - chr2L 263388 intron,3` UTR CG3645 -,CG17075 - chr2L 263475 intron,3` UTR CG3645 -,CG17075 - chr2L_10_260001 chr2L_260001 RAL-787 3 chr2L 395765 395778 chr2L 395824 395835 6 74 2.0 3.0 2.5 1.7 70 chr2L 395765 intergenic CR43718 + chr2L 395800 intergenic CR43718 + chr2L 395835 intergenic CR43718 + chr2L_6_395001 chr2L_395001 RAL-787 4 chr2L 467358 467368 chr2L 467455 467467 4 98 5.5 2.5 4.0 0.8 109 chr2L 467358 intron CG4297 - chr2L 467412 intron CG4297 - chr2L 467467 intron CG4297 - chr2L_4_465001 chr2L_465001 RAL-787 5 chr2L 533931 533950 chr2L 534014 534039 6 83 3.5 3.5 3.5 1.3 108 chr2L 533931 intron ush + chr2L 533985 intron ush + chr2L 534039 intron ush + chr2L_6_530001 chr2L_530001 RAL-787 6 chr2L 630323 630328 chr2L 630405 630420 5 90 1.5 0.5 1.0 2.5 97 chr2L 630323 intergenic not near genes chr2L 630372 intergenic not near genes chr2L 630420 intergenic not near genes chr2L_5_630001 chr2L_630001 RAL-787 7 chr2L 666285 666301 chr2L 666358 666377 6 75 4.0 0.5 2.2 1.9 92 chr2L 666285 intron ds - chr2L 666331 intron ds - chr2L 666377 intron ds - chr2L_6_665001 chr2L_665001 RAL-787 8 chr2L 764564 764590 chr2L 764645 764671 14 81 2.0 0.5 1.2 6.4 107 chr2L 764564 intergenic not near genes chr2L 764618 intergenic not near genes chr2L 764671 intergenic not near genes chr2L_14_760001 chr2L_760001 RAL-787 9 chr2L 799293 799320 chr2L 799370 799397 9 72 1.5 2.0 1.8 3.2 104 chr2L 799293 intergenic not near genes chr2L 799345 intergenic not near genes chr2L 799397 intergenic CR45259 + chr2L_9_795001 chr2L_795001 RAL-787 10 chr2L 877840 877872 chr2L 877921 877942 9 79 3.5 3.5 3.5 2.0 102 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877891 3` UTR,intron CG15824 -,ninaA + chr2L 877942 3` UTR,intron CG15824 -,ninaA + chr2L_9_875001 chr2L_875001 RAL-787 11 chr2L 922468 922495 chr2L 922549 922563 4 78 1.5 2.5 2.0 1.3 95 chr2L 922468 intergenic CG4341 + chr2L 922516 intergenic CG4341 + chr2L 922563 intergenic CG4341 + chr2L_4_920001 chr2L_920001 RAL-787 12 chr2L 931635 931666 chr2L 931711 931745 9 78 3.5 0.5 2.0 3.0 110 chr2L 931635 intron CG4341 + chr2L 931690 intron CG4341 + chr2L 931745 intron CG4341 + chr2L_9_930001 chr2L_930001 RAL-787 13 chr2L 964558 964570 chr2L 964642 964654 4 83 2.5 5.5 4.0 0.8 96 chr2L 964558 intergenic not near genes chr2L 964606 intergenic not near genes chr2L 964654 intergenic not near genes chr2L_4_960001 chr2L_960001 RAL-787 14 chr2L 976878 976912 chr2L 984514 984548 roo 11 7635 0.5 3.5 2.0 3.7 7670 chr2L 976878 intergenic not near genes chr2L 980713 intergenic not near genes chr2L 984548 intergenic not near genes chr2L_11_980001 chr2L_980001 RAL-787 15 chr2L 1019446 1019486 chr2L 1019529 1019568 14 80 2.5 4.0 3.2 3.3 122 chr2L 1019446 intron IA-2 - chr2L 1019507 intron IA-2 - chr2L 1019568 intron IA-2 - chr2L_14_1015001 chr2L_1015001 RAL-787 16 chr2L 1156861 1156872 chr2L 1156965 1156972 4 103 3.0 2.5 2.8 1.1 111 chr2L 1156861 intron capt - chr2L 1156916 intron capt - chr2L 1156972 intron capt - chr2L_4_1155001 chr2L_1155001 RAL-787 17 chr2L 1209911 1209928 chr2L 1210122 1210139 8 211 0.5 1.0 0.8 4.4 228 chr2L 1209911 intergenic not near genes chr2L 1210025 intergenic not near genes chr2L 1210139 intergenic not near genes chr2L_8_1210001 chr2L_1210001 RAL-787 18 chr2L 1220132 1220160 chr2L 1227595 1227626 blood 9 7466 5.0 4.0 4.5 1.6 7494 chr2L 1220132 intron CG42329 + chr2L 1223879 intron CG42329 + chr2L 1227626 intron CG42329 + chr2L_9_1220001 chr2L_1220001 RAL-787 19 chr2L 1272409 1272440 chr2L 1272528 1272559 10 117 1.5 3.5 2.5 2.9 150 chr2L 1272409 intron robo3 + chr2L 1272484 intron robo3 + chr2L 1272559 intron robo3 + chr2L_10_1270001 chr2L_1270001 RAL-787 20 chr2L 1301751 1301781 chr2L 1302289 1302320 gypsy 5 538 0.5 0.5 0.5 3.3 569 chr2L 1301751 intergenic not near genes chr2L 1302036 intergenic not near genes chr2L 1302320 intergenic not near genes chr2L_5_1300001 chr2L_1300001 RAL-787 21 chr2L 1332211 1332236 chr2L 1332288 1332313 7 76 0.5 5.0 2.8 1.8 102 chr2L 1332211 intergenic not near genes chr2L 1332262 intergenic not near genes chr2L 1332313 intergenic not near genes chr2L_7_1330001 chr2L_1330001 RAL-787 22 chr2L 1481442 1481473 chr2L 1481528 1481550 5 79 0.5 3.5 2.0 1.7 108 chr2L 1481442 intergenic not near genes chr2L 1481496 intergenic not near genes chr2L 1481550 intergenic not near genes chr2L_5_1480001 chr2L_1480001 RAL-787 23 chr2L 1508050 1508273 chr2L 1508133 1508341 6 80 1.5 2.5 2.0 2.0 291 chr2L 1508050 intergenic not near genes chr2L 1508196 intergenic not near genes chr2L 1508341 intergenic not near genes chr2L_6_1505001 chr2L_1505001 RAL-787 24 chr2L 1557152 1557174 chr2L 1557277 1557298 8 125 2.0 1.0 1.5 3.2 146 chr2L 1557152 intron haf + chr2L 1557225 intron haf + chr2L 1557298 intron haf + chr2L_8_1555001 chr2L_1555001 RAL-787 25 chr2L 1570689 1570717 chr2L 1573556 1573589 F-element 7 2871 2.5 3.0 2.8 1.8 2900 chr2L 1570689 intron haf + chr2L 1572139 intron haf + chr2L 1573589 intron haf + chr2L_7_1570001 chr2L_1570001 RAL-787 26 chr2L 1662021 1662030 chr2L 1662106 1662115 5 85 1.5 0.0 0.8 2.8 94 chr2L 1662021 intron chinmo + chr2L 1662068 intron chinmo + chr2L 1662115 intron chinmo + chr2L_5_1660001 chr2L_1660001 RAL-787 27 chr2L 1678984 1679007 chr2L 1686449 1686471 blood 10 7465 2.0 4.5 3.2 2.4 7487 chr2L 1678984 intron chinmo + chr2L 1682728 intron chinmo + chr2L 1686471 intron chinmo + chr2L_10_1680001 chr2L_1680001 RAL-787 28 chr2L 1711364 1711382 chr2L 1711688 1711706 mdg3 5 324 3.5 7.5 5.5 0.8 342 chr2L 1711364 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711535 3` UTR frtz - chr2L 1711706 3` UTR frtz - chr2L_5_1710001 chr2L_1710001 RAL-787 29 chr2L 1744813 1744833 chr2L 1744886 1744895 9 75 1.0 2.5 1.8 3.2 82 chr2L 1744813 intron CG17646 + chr2L 1744854 intron CG17646 + chr2L 1744895 intron CG17646 + chr2L_9_1740001 chr2L_1740001 RAL-787 30 chr2L 1828402 1828429 chr2L 1828486 1828513 15 84 1.5 1.5 1.5 6.0 111 chr2L 1828402 intergenic not near genes chr2L 1828458 intergenic not near genes chr2L 1828513 intergenic not near genes chr2L_15_1825001 chr2L_1825001 RAL-787 31 chr2L 1883416 1883441 chr2L 1883999 1884021 5 580 3.0 1.5 2.2 1.6 605 chr2L 1883416 intron CG15358 - chr2L 1883718 intron CG15358 - chr2L 1884021 exon CG15358 - chr2L_5_1880001 chr2L_1880001 RAL-787 32 chr2L 1938312 1938325 chr2L 1938413 1938435 8 109 6.0 0.5 3.2 1.9 123 chr2L 1938312 intron CG7337 + chr2L 1938374 intron CG7337 + chr2L 1938435 intron CG7337 + chr2L_8_1935001 chr2L_1935001 RAL-787 33 chr2L 2022722 2022751 chr2L 2022798 2022808 4 70 3.0 2.5 2.8 1.1 86 chr2L 2022722 intron CG4238 + chr2L 2022765 intron CG4238 + chr2L 2022808 intron CG4238 + chr2L_4_2020001 chr2L_2020001 RAL-787 34 chr2L 2068243 2068258 chr2L 2068735 2068752 6 493 2.5 2.0 2.2 1.9 509 chr2L 2068243 intron dpr3 - chr2L 2068498 intron dpr3 - chr2L 2068752 intron dpr3 - chr2L_6_2065001 chr2L_2065001 RAL-787 35 chr2L 2100376 2100398 chr2L 2109527 2109540 roo 7 9149 6.0 2.5 4.2 1.3 9164 chr2L 2100376 intron dpr3 - chr2L 2104958 intron dpr3 - chr2L 2109540 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-787 36 chr2L 2100400 2100408 chr2L 2109524 2109559 roo 6 9139 4.5 2.0 3.2 1.4 9159 chr2L 2100400 intron dpr3 - chr2L 2104980 intron dpr3 - chr2L 2109559 intron dpr3 - chr2L_6_2100001 chr2L_2100001 RAL-787 37 chr2L 2145748 2145779 chr2L 2145834 2145865 13 86 4.5 3.5 4.0 2.6 117 chr2L 2145748 3` UTR CG11723 - chr2L 2145806 3` UTR CG11723 - chr2L 2145865 3` UTR CG11723 - chr2L_13_2145001 chr2L_2145001 RAL-787 38 chr2L 2250418 2250425 chr2L 2251185 2251192 4 767 4.0 0.0 2.0 1.3 774 chr2L 2250418 intergenic Ser12 - chr2L 2250805 exon Ser12 - chr2L 2251192 exon Ser12 - chr2L_4_2250001 chr2L_2250001 RAL-787 39 chr2L 2294048 2294075 chr2L 2299245 2299245 copia 4 5184 2.5 3.5 3.0 1.0 5197 chr2L 2294048 intergenic not near genes chr2L 2296646 intergenic not near genes chr2L 2299245 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-787 40 chr2L 2303504 2303535 chr2L 2303586 2303618 10 82 3.0 6.0 4.5 1.8 114 chr2L 2303504 intergenic not near genes chr2L 2303561 intergenic not near genes chr2L 2303618 intergenic not near genes chr2L_10_2300001 chr2L_2300001 RAL-787 41 chr2L 2392157 2392176 chr2L 2392267 2392286 4 110 1.0 1.5 1.2 1.8 129 chr2L 2392157 intron VGlut + chr2L 2392222 intron VGlut + chr2L 2392286 intron VGlut + chr2L_4_2390001 chr2L_2390001 RAL-787 42 chr2L 2626328 2626349 chr2L 2626836 2626836 5 503 3.0 3.0 3.0 1.2 508 chr2L 2626328 3` UTR CR45705 - chr2L 2626582 3` UTR CR45705 - chr2L 2626836 3` UTR CR45705 - chr2L_5_2625001 chr2L_2625001 RAL-787 43 chr2L 2661220 2661227 chr2L 2663034 2663048 I-element 4 1820 1.5 1.5 1.5 1.6 1828 chr2L 2661220 intergenic not near genes chr2L 2662134 intergenic not near genes chr2L 2663048 intergenic not near genes chr2L_4_2660001 chr2L_2660001 RAL-787 44 chr2L 2667626 2667655 chr2L 2667702 2667733 11 77 1.5 1.5 1.5 4.4 107 chr2L 2667626 intergenic not near genes chr2L 2667680 intergenic not near genes chr2L 2667733 intergenic not near genes chr2L_11_2665001 chr2L_2665001 RAL-787 45 chr2L 2698880 2698894 chr2L 2698966 2698981 5 87 1.0 5.5 3.2 1.2 101 chr2L 2698880 intron CG31690 + chr2L 2698930 intron CG31690 + chr2L 2698981 intron CG31690 + chr2L_5_2695001 chr2L_2695001 RAL-787 46 chr2L 2713518 2713551 chr2L 2713617 2713644 15 95 2.0 2.0 2.0 5.0 126 chr2L 2713518 intron CG31690 + chr2L 2713581 intron CG31690 + chr2L 2713644 intron CG31690 + chr2L_15_2710001 chr2L_2710001 RAL-787 47 chr2L 2730814 2730829 chr2L 2730917 2730917 4 98 2.0 2.5 2.2 1.2 103 chr2L 2730814 intron CG31689 + chr2L 2730866 intron CG31689 + chr2L 2730917 intron CG31689 + chr2L_4_2730001 chr2L_2730001 RAL-787 48 chr2L 2730831 2730837 chr2L 2730914 2730940 4 89 1.0 2.5 1.8 1.4 109 chr2L 2730831 intron CG31689 + chr2L 2730886 intron CG31689 + chr2L 2730940 intron CG31689 + chr2L_4_2730001 chr2L_2730001 RAL-787 49 chr2L 2751899 2751932 chr2L 2751988 2752021 14 87 2.5 3.0 2.8 3.7 122 chr2L 2751899 intron Pgk - chr2L 2751960 intron Pgk - chr2L 2752021 intron Pgk - chr2L_14_2750001 chr2L_2750001 RAL-787 50 chr2L 2801500 2801530 chr2L 2801585 2801615 11 83 6.5 2.5 4.5 2.0 115 chr2L 2801500 intergenic not near genes chr2L 2801558 intergenic not near genes chr2L 2801615 intergenic not near genes chr2L_11_2800001 chr2L_2800001 RAL-787 51 chr2L 2864345 2864366 chr2L 2864605 2864627 7 261 7.5 0.0 3.8 1.5 282 chr2L 2864345 intron CG2991 + chr2L 2864486 intron CG2991 + chr2L 2864627 intron CG2991 + chr2L_7_2860001 chr2L_2860001 RAL-787 52 chr2L 2871673 2871695 chr2L 2871747 2871775 9 79 4.5 3.0 3.8 1.9 102 chr2L 2871673 exon CG31694 - chr2L 2871724 intron CG31694 - chr2L 2871775 intron CG31694 - chr2L_9_2870001 chr2L_2870001 RAL-787 53 chr2L 2933311 2933315 chr2L 2935486 2935502 pogo 5 2180 4.0 5.5 4.8 0.9 2191 chr2L 2933311 intron lilli + chr2L 2934406 intron lilli + chr2L 2935502 intron lilli + chr2L_5_2930001 chr2L_2930001 RAL-787 54 chr2L 3073029 3073062 chr2L 3078232 3078264 copia 10 5203 2.0 2.0 2.0 3.3 5235 chr2L 3073029 intron toc - chr2L 3075646 intron toc - chr2L 3078264 intron toc - chr2L_10_3075001 chr2L_3075001 RAL-787 55 chr2L 3108880 3108891 chr2L 3108949 3108967 5 73 2.5 0.0 1.2 2.3 87 chr2L 3108880 intron toc - chr2L 3108924 intron toc - chr2L 3108967 intron toc - chr2L_5_3105001 chr2L_3105001 RAL-787 56 chr2L 3108892 3108897 chr2L 3108946 3108973 4 71 2.0 0.0 1.0 2.0 81 chr2L 3108892 intron toc - chr2L 3108932 intron toc - chr2L 3108973 intron toc - chr2L_4_3105001 chr2L_3105001 RAL-787 57 chr2L 3147277 3147304 chr2L 3147354 3147381 11 75 5.0 4.0 4.5 2.0 104 chr2L 3147277 3` UTR Mad - chr2L 3147329 3` UTR Mad - chr2L 3147381 3` UTR Mad - chr2L_11_3145001 chr2L_3145001 RAL-787 58 chr2L 3186470 3186498 chr2L 3186556 3186584 6 85 2.0 1.5 1.8 2.1 114 chr2L 3186470 intron CG34393 - chr2L 3186527 intron CG34393 - chr2L 3186584 intron CG34393 - chr2L_6_3185001 chr2L_3185001 RAL-787 59 chr2L 3192210 3192231 chr2L 3192321 3192337 8 110 3.0 7.0 5.0 1.3 127 chr2L 3192210 exon CG34393 - chr2L 3192274 intron CG34393 - chr2L 3192337 intron CG34393 - chr2L_8_3190001 chr2L_3190001 RAL-787 60 chr2L 3251497 3251525 chr2L 3259062 3259090 springer 5 7565 2.5 1.0 1.8 1.8 7593 chr2L 3251497 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259090 intergenic not near genes chr2L_5_3255001 chr2L_3255001 RAL-787 61 chr2L 3260708 3260716 chr2L 3260848 3260850 5 139 2.5 3.0 2.8 1.3 142 chr2L 3260708 intergenic CR45337 - chr2L 3260779 intergenic CR45337 - chr2L 3260850 intergenic CR45337 - chr2L_5_3260001 chr2L_3260001 RAL-787 62 chr2L 3291242 3291262 chr2L 3291321 3291341 8 79 1.5 6.0 3.8 1.7 99 chr2L 3291242 intergenic CG9664 - chr2L 3291292 3` UTR CG9664 - chr2L 3291341 3` UTR CG9664 - chr2L_8_3290001 chr2L_3290001 RAL-787 63 chr2L 3343029 3343049 chr2L 3343332 3343353 10 301 2.5 7.5 5.0 1.7 324 chr2L 3343029 intron E23 - chr2L 3343191 intron E23 - chr2L 3343353 intron E23 - chr2L_10_3340001 chr2L_3340001 RAL-787 64 chr2L 3359264 3359269 chr2L 3359368 3359392 5 119 3.0 1.5 2.2 1.6 128 chr2L 3359264 3` UTR CG34394 - chr2L 3359328 3` UTR CG34394 - chr2L 3359392 3` UTR CG34394 - chr2L_5_3355001 chr2L_3355001 RAL-787 65 chr2L 3523037 3523056 chr2L 3523149 3523169 5 112 1.5 5.5 3.5 1.1 132 chr2L 3523037 exon Sr-CIV - chr2L 3523103 intron Sr-CIV - chr2L 3523169 exon Sr-CIV - chr2L_5_3520001 chr2L_3520001 RAL-787 66 chr2L 3607930 3607958 chr2L 3608409 3608437 5 475 3.5 2.5 3.0 1.2 507 chr2L 3607930 intergenic not near genes chr2L 3608184 intergenic not near genes chr2L 3608437 intergenic not near genes chr2L_5_3605001 chr2L_3605001 RAL-787 67 chr2L 3616584 3616592 chr2L 3616661 3616669 7 77 0.5 3.0 1.8 2.5 85 chr2L 3616584 5` UTR CR44310 + chr2L 3616626 5` UTR CR44310 + chr2L 3616669 5` UTR CR44310 + chr2L_7_3615001 chr2L_3615001 RAL-787 68 chr2L 3649788 3649803 chr2L 3654990 3654990 copia 4 5198 2.0 5.5 3.8 0.8 5202 chr2L 3649788 intron for - chr2L 3652389 intron for - chr2L 3654990 intron for - chr2L_4_3650001 chr2L_3650001 RAL-787 69 chr2L 3705377 3705400 chr2L 3705458 3705482 5 82 3.5 1.5 2.5 1.4 105 chr2L 3705377 5` UTR CG31778 - chr2L 3705430 5` UTR CG31778 - chr2L 3705482 5` UTR CG31778 - chr2L_5_3705001 chr2L_3705001 RAL-787 70 chr2L 3784805 3784825 chr2L 3785664 3785684 5 859 9.5 13.5 11.5 0.4 879 chr2L 3784805 intergenic CG31960 + chr2L 3785244 exon CG31960 + chr2L 3785684 intergenic CG31958 +,CG31960 + chr2L_5_3785001 chr2L_3785001 RAL-787 71 chr2L 3815163 3815198 chr2L 3815241 3815275 7 78 1.5 0.0 0.8 3.9 112 chr2L 3815163 intergenic CR44076 + chr2L 3815219 intergenic CR44076 + chr2L 3815275 intergenic CR44076 + chr2L_7_3815001 chr2L_3815001 RAL-787 72 chr2L 3974722 3974755 chr2L 3974838 3974870 18 114 4.0 4.0 4.0 3.6 148 chr2L 3974722 intron fred - chr2L 3974796 intron fred - chr2L 3974870 intron fred - chr2L_18_3970001 chr2L_3970001 RAL-787 73 chr2L 4048035 4048068 chr2L 4048260 4048296 9 226 1.5 2.0 1.8 3.2 261 chr2L 4048035 intron ed + chr2L 4048166 intron ed + chr2L 4048296 intron ed + chr2L_9_4045001 chr2L_4045001 RAL-787 74 chr2L 4066040 4066065 chr2L 4068865 4068890 Juan 7 2824 4.0 5.0 4.5 1.3 2850 chr2L 4066040 intron ed + chr2L 4067465 intron ed + chr2L 4068890 intron ed + chr2L_7_4065001 chr2L_4065001 RAL-787 75 chr2L 4150637 4150656 chr2L 4150717 4150725 4 73 0.0 4.5 2.2 1.2 88 chr2L 4150637 exon CG2955 + chr2L 4150681 exon CG2955 + chr2L 4150725 exon CG2955 + chr2L_4_4150001 chr2L_4150001 RAL-787 76 chr2L 4181303 4181304 chr2L 4183906 4183936 Burdock 4 2622 2.5 5.5 4.0 0.8 2633 chr2L 4181303 intergenic not near genes chr2L 4182620 intergenic not near genes chr2L 4183936 intergenic not near genes chr2L_4_4180001 chr2L_4180001 RAL-787 77 chr2L 4231770 4231781 chr2L 4232069 4232080 6 299 3.5 1.0 2.2 1.9 310 chr2L 4231770 intergenic not near genes chr2L 4231925 intergenic not near genes chr2L 4232080 intergenic not near genes chr2L_6_4230001 chr2L_4230001 RAL-787 78 chr2L 4388455 4388468 chr2L 4388579 4388581 6 127 3.0 2.0 2.5 1.7 126 chr2L 4388455 5` UTR Tps1 + chr2L 4388518 5` UTR Tps1 + chr2L 4388581 5` UTR Tps1 + chr2L_6_4385001 chr2L_4385001 RAL-787 79 chr2L 4475955 4475987 chr2L 4476077 4476109 15 121 3.0 2.0 2.5 4.3 154 chr2L 4475955 intron ine - chr2L 4476032 intron ine - chr2L 4476109 intron ine - chr2L_15_4475001 chr2L_4475001 RAL-787 80 chr2L 4601705 4601737 chr2L 4609144 4609177 mdg1 16 7439 4.5 6.0 5.2 2.6 7472 chr2L 4601705 intron dp - chr2L 4605441 intron dp - chr2L 4609177 intron dp - chr2L_16_4605001 chr2L_4605001 RAL-787 81 chr2L 4656542 4656572 chr2L 4656619 4656646 6 76 2.0 1.5 1.8 2.1 104 chr2L 4656542 intergenic not near genes chr2L 4656594 intergenic not near genes chr2L 4656646 intergenic not near genes chr2L_6_4655001 chr2L_4655001 RAL-787 82 chr2L 4792725 4792757 chr2L 4792832 4792865 18 106 4.5 4.5 4.5 3.3 140 chr2L 4792725 intron CG15630 - chr2L 4792795 intron CG15630 - chr2L 4792865 intron CG15630 - chr2L_18_4790001 chr2L_4790001 RAL-787 83 chr2L 4819497 4819519 chr2L 4819620 4819642 6 120 1.5 5.0 3.2 1.4 145 chr2L 4819497 intergenic not near genes chr2L 4819570 intergenic not near genes chr2L 4819642 intergenic not near genes chr2L_6_4815001 chr2L_4815001 RAL-787 84 chr2L 4861227 4861255 chr2L 4861315 4861342 4 88 1.0 2.5 1.8 1.4 115 chr2L 4861227 intron pog + chr2L 4861284 intron pog + chr2L 4861342 intron pog + chr2L_4_4860001 chr2L_4860001 RAL-787 85 chr2L 4867716 4867747 chr2L 4867885 4867892 9 160 0.5 3.0 1.8 3.2 176 chr2L 4867716 intron pog + chr2L 4867804 intron pog + chr2L 4867892 intron pog + chr2L_9_4865001 chr2L_4865001 RAL-787 86 chr2L 4918166 4918180 chr2L 4923239 4923253 jockey 8 5073 3.5 0.0 1.8 2.9 5087 chr2L 4918166 intron hoe1 - chr2L 4920710 intron hoe1 - chr2L 4923253 intron hoe1 - chr2L_8_4920001 chr2L_4920001 RAL-787 87 chr2L 4923235 4923243 chr2L 4923326 4923331 5 90 0.0 0.0 0.0 5.0 96 chr2L 4923235 intron hoe1 - chr2L 4923283 intron hoe1 - chr2L 4923331 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-787 88 chr2L 5092421 5092443 chr2L 5092508 5092530 5 87 0.0 2.0 1.0 2.5 109 chr2L 5092421 intron pgant5 - chr2L 5092476 intron pgant5 - chr2L 5092530 intron pgant5 - chr2L_5_5090001 chr2L_5090001 RAL-787 89 chr2L 5120974 5121006 chr2L 5121068 5121100 7 94 2.0 3.0 2.5 2.0 126 chr2L 5120974 intron Msp300 + chr2L 5121037 intron Msp300 + chr2L 5121100 intron Msp300 + chr2L_7_5120001 chr2L_5120001 RAL-787 90 chr2L 5242865 5242894 chr2L 5243055 5243084 7 189 3.0 3.0 3.0 1.8 219 chr2L 5242865 intron tkv - chr2L 5242974 intron tkv - chr2L 5243084 intron tkv - chr2L_7_5240001 chr2L_5240001 RAL-787 91 chr2L 5488028 5488036 chr2L 5488101 5488116 4 76 2.0 1.5 1.8 1.4 88 chr2L 5488028 intergenic not near genes chr2L 5488072 intergenic not near genes chr2L 5488116 intergenic not near genes chr2L_4_5485001 chr2L_5485001 RAL-787 92 chr2L 5508541 5508564 chr2L 5508616 5508640 6 76 1.0 4.0 2.5 1.7 99 chr2L 5508541 intergenic not near genes chr2L 5508590 intergenic not near genes chr2L 5508640 intergenic not near genes chr2L_6_5505001 chr2L_5505001 RAL-787 93 chr2L 5511325 5511353 chr2L 5511408 5511436 6 83 1.5 2.5 2.0 2.0 111 chr2L 5511325 intergenic not near genes chr2L 5511380 intergenic not near genes chr2L 5511436 intergenic not near genes chr2L_6_5510001 chr2L_5510001 RAL-787 94 chr2L 5515213 5515239 chr2L 5515316 5515341 4 103 5.5 1.0 3.2 1.0 128 chr2L 5515213 intergenic not near genes chr2L 5515277 intergenic not near genes chr2L 5515341 intergenic not near genes chr2L_4_5515001 chr2L_5515001 RAL-787 95 chr2L 5676896 5676922 chr2L 5676992 5677017 9 96 1.0 0.5 0.8 5.0 121 chr2L 5676896 intergenic not near genes chr2L 5676956 intergenic not near genes chr2L 5677017 intergenic not near genes chr2L_9_5675001 chr2L_5675001 RAL-787 96 chr2L 5726223 5726241 chr2L 5726299 5726320 7 79 3.0 0.0 1.5 2.8 97 chr2L 5726223 intron CG11030 + chr2L 5726272 intron CG11030 + chr2L 5726320 intron CG11030 + chr2L_7_5725001 chr2L_5725001 RAL-787 97 chr2L 5827711 5827739 chr2L 5836719 5836721 roo 13 9004 3.0 3.0 3.0 3.2 9010 chr2L 5827711 intron TrissinR + chr2L 5832216 intron TrissinR + chr2L 5836721 intron TrissinR + chr2L_13_5830001 chr2L_5830001 RAL-787 98 chr2L 5883165 5883166 chr2L 5883242 5883246 4 79 0.0 4.0 2.0 1.3 81 chr2L 5883165 intergenic not near genes chr2L 5883206 intergenic not near genes chr2L 5883246 intergenic CG44574 + chr2L_4_5880001 chr2L_5880001 RAL-787 99 chr2L 5900270 5900289 chr2L 5900361 5900381 4 92 1.5 7.0 4.2 0.8 111 chr2L 5900270 3` UTR CR44579 - chr2L 5900326 3` UTR CR44579 - chr2L 5900381 intergenic CR44579 - chr2L_4_5900001 chr2L_5900001 RAL-787 100 chr2L 5904460 5904475 chr2L 5904540 5904555 7 80 1.5 0.0 0.8 3.9 95 chr2L 5904460 intron CG9021 - chr2L 5904508 intron CG9021 - chr2L 5904555 intron CG9021 - chr2L_7_5900001 chr2L_5900001 RAL-787 101 chr2L 5942030 5942037 chr2L 5942122 5942128 4 91 3.5 7.0 5.2 0.6 98 chr2L 5942030 5` UTR CR45289 + chr2L 5942079 5` UTR CR45289 + chr2L 5942128 5` UTR CR45289 + chr2L_4_5940001 chr2L_5940001 RAL-787 102 chr2L 6185450 6185470 chr2L 6185528 6185548 5 78 0.5 3.0 1.8 1.8 98 chr2L 6185450 intron CG34380 + chr2L 6185499 intron CG34380 + chr2L 6185548 intron CG34380 + chr2L_5_6185001 chr2L_6185001 RAL-787 103 chr2L 6242397 6242427 chr2L 6242476 6242505 11 69 1.0 5.5 3.2 2.6 108 chr2L 6242397 intergenic not near genes chr2L 6242451 intergenic not near genes chr2L 6242505 intergenic not near genes chr2L_11_6240001 chr2L_6240001 RAL-787 104 chr2L 6283948 6283979 chr2L 6284056 6284090 5 110 1.0 3.5 2.2 1.6 142 chr2L 6283948 intron Ddr + chr2L 6284019 intron Ddr + chr2L 6284090 intron Ddr + chr2L_5_6280001 chr2L_6280001 RAL-787 105 chr2L 6300561 6300587 chr2L 6300647 6300672 5 83 4.0 4.0 4.0 1.0 111 chr2L 6300561 intron Ddr + chr2L 6300616 intron Ddr + chr2L 6300672 intron Ddr + chr2L_5_6300001 chr2L_6300001 RAL-787 106 chr2L 6426866 6426888 chr2L 6445125 6445143 roo 6 18259 4.5 7.5 6.0 0.9 18277 chr2L 6426866 3` UTR CG9527 - chr2L 6436004 intron CG9527 - chr2L 6445143 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-787 107 chr2L 6590096 6590124 chr2L 6590174 6590202 6 76 1.5 5.5 3.5 1.3 106 chr2L 6590096 intron CG11319 - chr2L 6590149 intron CG11319 - chr2L 6590202 intron CG11319 - chr2L_6_6590001 chr2L_6590001 RAL-787 108 chr2L 6799541 6799560 chr2L 6799627 6799648 6 88 2.0 0.0 1.0 3.0 107 chr2L 6799541 5` UTR CR43610 + chr2L 6799594 5` UTR CR43610 + chr2L 6799648 intergenic CR43610 +,CG17376 - chr2L_6_6795001 chr2L_6795001 RAL-787 109 chr2L 6850392 6850407 chr2L 6850475 6850490 5 83 1.5 3.0 2.2 1.6 98 chr2L 6850392 intergenic not near genes chr2L 6850441 intergenic not near genes chr2L 6850490 intergenic not near genes chr2L_5_6850001 chr2L_6850001 RAL-787 110 chr2L 6986187 6986209 chr2L 6986290 6986312 6 100 4.5 5.5 5.0 1.0 125 chr2L 6986187 intron,5` UTR uif -,CR44326 + chr2L 6986250 intron,5` UTR uif -,CR44326 + chr2L 6986312 intron,5` UTR uif -,CR44326 + chr2L_6_6985001 chr2L_6985001 RAL-787 111 chr2L 7030082 7030108 chr2L 7030161 7030189 4 80 1.5 0.0 0.8 2.2 107 chr2L 7030082 intergenic Rab30 - chr2L 7030136 intergenic Rab30 - chr2L 7030189 intergenic Rab30 - chr2L_4_7030001 chr2L_7030001 RAL-787 112 chr2L 7111773 7111791 chr2L 7111858 7111876 4 85 2.5 0.0 1.2 1.8 103 chr2L 7111773 intron Pvf3 - chr2L 7111824 intron Pvf3 - chr2L 7111876 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-787 113 chr2L 7130348 7130362 chr2L 7130429 7130454 4 89 1.0 0.5 0.8 2.2 106 chr2L 7130348 intron Pvf3 - chr2L 7130401 intron Pvf3 - chr2L 7130454 intron Pvf3 - chr2L_4_7130001 chr2L_7130001 RAL-787 114 chr2L 7295278 7295311 chr2L 7295362 7295395 13 84 1.0 2.5 1.8 4.6 117 chr2L 7295278 intergenic not near genes chr2L 7295336 intergenic not near genes chr2L 7295395 intergenic not near genes chr2L_13_7295001 chr2L_7295001 RAL-787 115 chr2L 7331669 7331696 chr2L 7331756 7331783 6 87 2.5 6.0 4.2 1.2 114 chr2L 7331669 intergenic not near genes chr2L 7331726 intergenic not near genes chr2L 7331783 intergenic not near genes chr2L_6_7330001 chr2L_7330001 RAL-787 116 chr2L 7343326 7343356 chr2L 7350440 7350472 roo 14 7115 2.0 5.5 3.8 2.9 7146 chr2L 7343326 intron Wnt6 + chr2L 7346899 intron Wnt6 + chr2L 7350472 intron Wnt6 + chr2L_14_7345001 chr2L_7345001 RAL-787 117 chr2L 7377889 7377901 chr2L 7377986 7377998 6 97 0.5 3.0 1.8 2.1 109 chr2L 7377889 intron ninaC + chr2L 7377944 intron ninaC + chr2L 7377998 intron ninaC + chr2L_6_7375001 chr2L_7375001 RAL-787 118 chr2L 7399310 7399334 chr2L 7399683 7399707 7 373 2.0 3.5 2.8 1.8 397 chr2L 7399310 intergenic not near genes chr2L 7399508 intergenic not near genes chr2L 7399707 intergenic not near genes chr2L_7_7395001 chr2L_7395001 RAL-787 119 chr2L 7555729 7555754 chr2L 7555813 7555838 6 83 5.5 3.0 4.2 1.2 109 chr2L 7555729 intron RapGAP1 - chr2L 7555784 intron RapGAP1 - chr2L 7555838 intron RapGAP1 - chr2L_6_7555001 chr2L_7555001 RAL-787 120 chr2L 7609541 7609741 chr2L 7609636 7609818 6 86 0.0 1.0 0.5 4.0 277 chr2L 7609541 intron CG6739 + chr2L 7609680 intron CG6739 + chr2L 7609818 intron CG6739 + chr2L_6_7605001 chr2L_7605001 RAL-787 121 chr2L 7671918 7671949 chr2L 7672016 7672047 11 96 1.5 2.0 1.8 3.9 129 chr2L 7671918 intron,intron Slob -,Myo28B1 + chr2L 7671982 intron,intron Slob -,Myo28B1 + chr2L 7672047 intron,intron Slob -,Myo28B1 + chr2L_11_7670001 chr2L_7670001 RAL-787 122 chr2L 7977098 7977110 chr2L 7984070 7984085 297 4 6973 5.0 6.0 5.5 0.6 6987 chr2L 7977098 intron Snoo - chr2L 7980592 intron Snoo - chr2L 7984085 intron,5` UTR Snoo -,CG7231 + chr2L_4_7980001 chr2L_7980001 RAL-787 123 chr2L 8013614 8013630 chr2L 8018819 8018835 copia 8 5205 4.0 0.0 2.0 2.7 5221 chr2L 8013614 intron Tg + chr2L 8016224 intron Tg + chr2L 8018835 intron Tg + chr2L_8_8015001 chr2L_8015001 RAL-787 124 chr2L 8044103 8044130 chr2L 8044174 8044208 11 76 2.0 1.5 1.8 3.9 105 chr2L 8044103 intron CG7466 + chr2L 8044156 intron CG7466 + chr2L 8044208 intron CG7466 + chr2L_11_8040001 chr2L_8040001 RAL-787 125 chr2L 8104085 8104109 chr2L 8104163 8104187 4 79 5.5 4.5 5.0 0.7 102 chr2L 8104085 intron Bsg + chr2L 8104136 intron Bsg + chr2L 8104187 intron Bsg + chr2L_4_8100001 chr2L_8100001 RAL-787 126 chr2L 8145812 8145827 chr2L 8145910 8145927 5 96 2.5 4.0 3.2 1.2 115 chr2L 8145812 intron,5` UTR CG8552 -,CG43394 + chr2L 8145870 intron,5` UTR CG8552 -,CG43394 + chr2L 8145927 intron,5` UTR CG8552 -,CG43394 + chr2L_5_8145001 chr2L_8145001 RAL-787 127 chr2L 8167144 8167179 chr2L 8167235 8167270 12 90 2.0 2.0 2.0 4.0 126 chr2L 8167144 intron Piezo + chr2L 8167207 intron Piezo + chr2L 8167270 intron Piezo + chr2L_12_8165001 chr2L_8165001 RAL-787 128 chr2L 8285028 8285036 chr2L 8285098 8285112 6 75 2.0 2.0 2.0 2.0 84 chr2L 8285028 intron Btk29A - chr2L 8285070 intron Btk29A - chr2L 8285112 intron Btk29A - chr2L_6_8285001 chr2L_8285001 RAL-787 129 chr2L 8502666 8502690 chr2L 8502744 8502774 8 83 3.0 1.5 2.2 2.5 108 chr2L 8502666 intron Dh31 - chr2L 8502720 intron Dh31 - chr2L 8502774 intron Dh31 - chr2L_8_8500001 chr2L_8500001 RAL-787 130 chr2L 8714351 8714384 chr2L 8714432 8714465 10 81 5.0 1.5 3.2 2.4 114 chr2L 8714351 intron raw - chr2L 8714408 intron raw - chr2L 8714465 intron raw - chr2L_10_8710001 chr2L_8710001 RAL-787 131 chr2L 8719211 8719232 chr2L 8719287 8719304 8 75 1.5 0.0 0.8 4.4 93 chr2L 8719211 intron raw - chr2L 8719258 intron raw - chr2L 8719304 intron raw - chr2L_8_8715001 chr2L_8715001 RAL-787 132 chr2L 8723116 8723147 chr2L 8731493 8731523 Tirant 16 8376 2.0 2.5 2.2 5.0 8407 chr2L 8723116 intron raw - chr2L 8727320 intron raw - chr2L 8731523 intron raw - chr2L_16_8725001 chr2L_8725001 RAL-787 133 chr2L 8784707 8784722 chr2L 8784818 8784833 7 111 2.5 3.0 2.8 1.8 126 chr2L 8784707 intergenic not near genes chr2L 8784770 intergenic not near genes chr2L 8784833 intergenic not near genes chr2L_7_8780001 chr2L_8780001 RAL-787 134 chr2L 8789306 8789339 chr2L 8789382 8789412 12 73 2.5 3.5 3.0 3.0 106 chr2L 8789306 intergenic not near genes chr2L 8789359 intergenic not near genes chr2L 8789412 intergenic not near genes chr2L_12_8785001 chr2L_8785001 RAL-787 135 chr2L 8803185 8803205 chr2L 8803267 8803291 4 86 3.0 3.0 3.0 1.0 106 chr2L 8803185 intergenic not near genes chr2L 8803238 intergenic not near genes chr2L 8803291 intergenic not near genes chr2L_4_8800001 chr2L_8800001 RAL-787 136 chr2L 9025830 9025845 chr2L 9025914 9025929 7 82 2.5 6.0 4.2 1.3 99 chr2L 9025830 intron,3` UTR CG9582 -,CR44352 - chr2L 9025880 intron,3` UTR CG9582 -,CR44352 - chr2L 9025929 intron,3` UTR CG9582 -,CR44352 - chr2L_7_9025001 chr2L_9025001 RAL-787 137 chr2L 9025849 9025854 chr2L 9025908 9025938 6 79 2.0 4.5 3.2 1.4 89 chr2L 9025849 intron,3` UTR CG9582 -,CR44352 - chr2L 9025894 intron,3` UTR CG9582 -,CR44352 - chr2L 9025938 intron,3` UTR CG9582 -,CR44352 - chr2L_6_9025001 chr2L_9025001 RAL-787 138 chr2L 9084337 9084340 chr2L 16217660 16217660 12 7133321 14.0 19.5 16.8 0.7 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_12_12650001 chr2L_12650001 RAL-787 139 chr2L 9105751 9105779 chr2L 9105902 9105930 11 149 1.0 3.0 2.0 3.7 179 chr2L 9105751 intergenic not near genes chr2L 9105840 intergenic not near genes chr2L 9105930 intergenic not near genes chr2L_11_9105001 chr2L_9105001 RAL-787 140 chr2L 9108328 9108334 chr2L 9108384 9108417 6 74 2.0 3.5 2.8 1.6 89 chr2L 9108328 intergenic not near genes chr2L 9108372 intergenic not near genes chr2L 9108417 intergenic not near genes chr2L_6_9105001 chr2L_9105001 RAL-787 141 chr2L 9217969 9218001 chr2L 9222756 9222788 Doc 7 4787 2.5 2.0 2.2 2.2 4819 chr2L 9217969 intron tai + chr2L 9220378 intron tai + chr2L 9222788 intron tai + chr2L_7_9220001 chr2L_9220001 RAL-787 142 chr2L 9251157 9251176 chr2L 9251254 9251265 4 93 7.0 7.0 7.0 0.5 108 chr2L 9251157 intergenic aust -,borr - chr2L 9251211 intergenic aust -,borr - chr2L 9251265 intergenic borr -,aust - chr2L_4_9250001 chr2L_9250001 RAL-787 143 chr2L 9283222 9283436 chr2L 9283317 9283518 15 83 1.0 0.0 0.5 10.0 296 chr2L 9283222 intron Ggamma30A + chr2L 9283370 intron Ggamma30A + chr2L 9283518 intron Ggamma30A + chr2L_15_9280001 chr2L_9280001 RAL-787 144 chr2L 9297379 9297403 chr2L 9297455 9297472 10 76 4.0 3.5 3.8 2.1 93 chr2L 9297379 3` UTR Ggamma30A + chr2L 9297426 3` UTR Ggamma30A + chr2L 9297472 3` UTR Ggamma30A + chr2L_10_9295001 chr2L_9295001 RAL-787 145 chr2L 9303513 9303547 chr2L 9303593 9303627 13 79 2.5 2.0 2.2 4.1 114 chr2L 9303513 intergenic not near genes chr2L 9303570 intergenic not near genes chr2L 9303627 intergenic not near genes chr2L_13_9300001 chr2L_9300001 RAL-787 146 chr2L 9391666 9391705 chr2L 9391753 9391792 10 86 1.5 2.5 2.0 3.3 126 chr2L 9391666 intron Shawl - chr2L 9391729 intron Shawl - chr2L 9391792 intron Shawl - chr2L_10_9390001 chr2L_9390001 RAL-787 147 chr2L 9393500 9393531 chr2L 9396467 9396467 jockey 10 2964 2.0 3.0 2.5 2.9 2967 chr2L 9393500 intron Shawl - chr2L 9394984 intron Shawl - chr2L 9396467 intron Shawl - chr2L_10_9390001 chr2L_9390001 RAL-787 148 chr2L 9421020 9421028 chr2L 9421164 9421171 4 142 0.0 7.5 3.8 0.8 151 chr2L 9421020 intron Mco1 + chr2L 9421096 intron Mco1 + chr2L 9421171 intron Mco1 + chr2L_4_9420001 chr2L_9420001 RAL-787 149 chr2L 9454979 9455007 chr2L 9455081 9455106 8 102 3.0 1.0 2.0 2.7 127 chr2L 9454979 intron numb + chr2L 9455042 intron numb + chr2L 9455106 intron numb + chr2L_8_9455001 chr2L_9455001 RAL-787 150 chr2L 9457070 9457104 chr2L 9457147 9457180 10 76 2.5 2.0 2.2 3.1 110 chr2L 9457070 intron numb + chr2L 9457125 intron numb + chr2L 9457180 intron numb + chr2L_10_9455001 chr2L_9455001 RAL-787 151 chr2L 9524136 9524168 chr2L 9524226 9524258 10 89 2.5 3.5 3.0 2.5 122 chr2L 9524136 intron Oatp30B + chr2L 9524197 intron Oatp30B + chr2L 9524258 intron Oatp30B + chr2L_10_9520001 chr2L_9520001 RAL-787 152 chr2L 9593603 9593628 chr2L 9593676 9593705 7 74 2.0 3.0 2.5 2.0 102 chr2L 9593603 intergenic not near genes chr2L 9593654 intergenic not near genes chr2L 9593705 intergenic not near genes chr2L_7_9590001 chr2L_9590001 RAL-787 153 chr2L 9730980 9731006 chr2L 9731062 9731071 11 81 3.5 2.5 3.0 2.8 91 chr2L 9730980 intron Nckx30C - chr2L 9731026 intron Nckx30C - chr2L 9731071 intron Nckx30C - chr2L_11_9730001 chr2L_9730001 RAL-787 154 chr2L 9837433 9837446 chr2L 9837510 9837524 4 78 2.5 2.5 2.5 1.1 91 chr2L 9837433 intron nAChRalpha6 - chr2L 9837478 intron nAChRalpha6 - chr2L 9837524 intron nAChRalpha6 - chr2L_4_9835001 chr2L_9835001 RAL-787 155 chr2L 9839271 9839295 chr2L 9839354 9839380 6 84 2.5 2.5 2.5 1.7 109 chr2L 9839271 intron nAChRalpha6 - chr2L 9839326 intron nAChRalpha6 - chr2L 9839380 intron nAChRalpha6 - chr2L_6_9835001 chr2L_9835001 RAL-787 156 chr2L 9943371 9943385 chr2L 9943431 9943465 4 75 1.5 1.0 1.2 1.8 94 chr2L 9943371 intron CG5853 - chr2L 9943418 intron CG5853 - chr2L 9943465 intron CG5853 - chr2L_4_9940001 chr2L_9940001 RAL-787 157 chr2L 9973724 9973756 chr2L 9980843 9980868 HMS-Beagle 11 7112 5.5 6.0 5.8 1.6 7144 chr2L 9973724 intergenic not near genes chr2L 9977296 intergenic not near genes chr2L 9980868 intergenic not near genes chr2L_11_9975001 chr2L_9975001 RAL-787 158 chr2L 10156333 10156355 chr2L 10163797 10163825 blood 5 7468 3.0 0.5 1.8 1.8 7492 chr2L 10156333 intron,3` UTR CG44153 -,CG4839 + chr2L 10160079 intron CG44153 - chr2L 10163825 intron CG44153 - chr2L_5_10160001 chr2L_10160001 RAL-787 159 chr2L 10490277 10490298 chr2L 10490359 10490380 11 82 6.0 3.0 4.5 2.0 103 chr2L 10490277 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490328 3` UTR,3` UTR CG6144 +,CG13144 - chr2L 10490380 3` UTR,3` UTR CG6144 +,CG13144 - chr2L_11_10490001 chr2L_10490001 RAL-787 160 chr2L 10495314 10495465 chr2L 10495391 10495551 9 85 0.0 0.0 0.0 9.0 237 chr2L 10495314 intron Myo31DF - chr2L 10495432 intron Myo31DF - chr2L 10495551 intron Myo31DF - chr2L_9_10495001 chr2L_10495001 RAL-787 161 chr2L 10515361 10515380 chr2L 10515454 10515473 5 93 2.0 0.0 1.0 2.5 112 chr2L 10515361 intron,intron CG45083 -,Fatp - chr2L 10515417 intron,intron CG45083 -,Fatp - chr2L 10515473 intron,intron CG45083 -,Fatp - chr2L_5_10515001 chr2L_10515001 RAL-787 162 chr2L 10572701 10572734 chr2L 10572782 10572815 15 80 3.5 2.5 3.0 3.8 114 chr2L 10572701 intron Trim9 + chr2L 10572758 intron Trim9 + chr2L 10572815 intron Trim9 + chr2L_15_10570001 chr2L_10570001 RAL-787 163 chr2L 10580685 10580823 chr2L 10580760 10580904 6 80 1.5 10.5 6.0 0.9 219 chr2L 10580685 intron Trim9 + chr2L 10580794 intron Trim9 + chr2L 10580904 intron Trim9 + chr2L_6_10580001 chr2L_10580001 RAL-787 164 chr2L 10592842 10592858 chr2L 10600502 10600519 opus 4 7661 3.0 1.5 2.2 1.2 7677 chr2L 10592842 intron Trim9 + chr2L 10596680 intron Trim9 + chr2L 10600519 intron Trim9 + chr2L_4_10595001 chr2L_10595001 RAL-787 165 chr2L 10631213 10631234 chr2L 10631345 10631365 8 131 2.0 0.0 1.0 4.0 152 chr2L 10631213 intron CG7329 - chr2L 10631289 intron CG7329 - chr2L 10631365 intron CG7329 - chr2L_8_10630001 chr2L_10630001 RAL-787 166 chr2L 10640638 10640672 chr2L 10640727 10640748 17 85 1.5 1.5 1.5 6.8 110 chr2L 10640638 exon CG31872 + chr2L 10640693 exon CG31872 + chr2L 10640748 exon CG31872 + chr2L_17_10640001 chr2L_10640001 RAL-787 167 chr2L 10698136 10698157 chr2L 10698219 10698240 5 83 3.0 2.0 2.5 1.4 104 chr2L 10698136 5` UTR CR44181 + chr2L 10698188 5` UTR CR44181 + chr2L 10698240 intergenic CR44181 +,CG7300 - chr2L_5_10695001 chr2L_10695001 RAL-787 168 chr2L 10704919 10704926 chr2L 10705014 10705021 4 95 4.0 0.5 2.2 1.2 102 chr2L 10704919 intron,3` UTR Lip2 -,CG6415 + chr2L 10704970 intron Lip2 - chr2L 10705021 intron Lip2 - chr2L_4_10700001 chr2L_10700001 RAL-787 169 chr2L 10783774 10783801 chr2L 10783861 10783889 12 88 2.5 2.5 2.5 3.4 115 chr2L 10783774 intron CG31869 - chr2L 10783832 intron CG31869 - chr2L 10783889 intron CG31869 - chr2L_12_10780001 chr2L_10780001 RAL-787 170 chr2L 10836332 10836367 chr2L 10836410 10836448 4 80 2.5 1.5 2.0 1.3 116 chr2L 10836332 intron Nos - chr2L 10836390 intron Nos - chr2L 10836448 intron Nos - chr2L_4_10835001 chr2L_10835001 RAL-787 171 chr2L 10862849 10862870 chr2L 10864463 10864483 Rt1c 6 1610 5.0 6.5 5.8 0.9 1634 chr2L 10862849 3` UTR CR43807 - chr2L 10863666 intron CR43807 - chr2L 10864483 3` UTR CR43807 - chr2L_6_10860001 chr2L_10860001 RAL-787 172 chr2L 10912989 10913001 chr2L 10913068 10913080 8 77 6.5 3.5 5.0 1.3 91 chr2L 10912989 intergenic not near genes chr2L 10913034 intergenic not near genes chr2L 10913080 intergenic not near genes chr2L_8_10910001 chr2L_10910001 RAL-787 173 chr2L 10945073 10945089 chr2L 10945332 10945348 4 259 2.0 2.5 2.2 1.2 275 chr2L 10945073 intron dpr2 - chr2L 10945210 intron dpr2 - chr2L 10945348 intron dpr2 - chr2L_4_10945001 chr2L_10945001 RAL-787 174 chr2L 10946955 10946968 chr2L 10956170 10956183 roo 9 9215 3.0 9.0 6.0 1.3 9228 chr2L 10946955 intron dpr2 - chr2L 10951569 intron dpr2 - chr2L 10956183 intron dpr2 - chr2L_9_10950001 chr2L_10950001 RAL-787 175 chr2L 11030426 11030434 chr2L 11030509 11030516 4 82 10.0 3.0 6.5 0.5 90 chr2L 11030426 intron Samuel - chr2L 11030471 intron Samuel - chr2L 11030516 intron Samuel - chr2L_4_11030001 chr2L_11030001 RAL-787 176 chr2L 11056577 11056598 chr2L 11056659 11056680 6 82 0.5 4.0 2.2 1.9 103 chr2L 11056577 intron Samuel - chr2L 11056628 intron Samuel - chr2L 11056680 intron Samuel - chr2L_6_11055001 chr2L_11055001 RAL-787 177 chr2L 11207479 11207498 chr2L 11207555 11207580 7 77 4.0 3.0 3.5 1.6 101 chr2L 11207479 intergenic not near genes chr2L 11207530 intergenic not near genes chr2L 11207580 intergenic not near genes chr2L_7_11205001 chr2L_11205001 RAL-787 178 chr2L 11339736 11339739 chr2L 11339813 11339816 5 77 5.0 1.0 3.0 1.2 80 chr2L 11339736 intergenic not near genes chr2L 11339776 intergenic not near genes chr2L 11339816 intergenic not near genes chr2L_5_11335001 chr2L_11335001 RAL-787 179 chr2L 11418655 11418688 chr2L 11418733 11418767 4 78 1.5 2.0 1.8 1.4 112 chr2L 11418655 intergenic not near genes chr2L 11418711 intergenic not near genes chr2L 11418767 intergenic not near genes chr2L_4_11415001 chr2L_11415001 RAL-787 180 chr2L 11458946 11458976 chr2L 11459061 11459091 6 116 1.0 1.5 1.2 2.7 145 chr2L 11458946 intergenic not near genes chr2L 11459018 intergenic not near genes chr2L 11459091 intergenic not near genes chr2L_6_11455001 chr2L_11455001 RAL-787 181 chr2L 11491127 11491152 chr2L 11491208 11491210 5 74 1.5 1.0 1.2 2.3 83 chr2L 11491127 intergenic not near genes chr2L 11491168 intergenic not near genes chr2L 11491210 intergenic not near genes chr2L_5_11490001 chr2L_11490001 RAL-787 182 chr2L 11537754 11537783 chr2L 11537871 11537900 6 116 1.5 1.5 1.5 2.4 146 chr2L 11537754 intergenic not near genes chr2L 11537827 intergenic not near genes chr2L 11537900 intergenic not near genes chr2L_6_11535001 chr2L_11535001 RAL-787 183 chr2L 11563636 11563670 chr2L 11568840 11568873 copia 10 5204 3.5 2.5 3.0 2.5 5237 chr2L 11563636 intergenic not near genes chr2L 11566254 intergenic not near genes chr2L 11568873 intergenic not near genes chr2L_10_11565001 chr2L_11565001 RAL-787 184 chr2L 11713508 11713539 chr2L 11720975 11721007 blood 9 7466 1.5 2.5 2.0 3.0 7499 chr2L 11713508 intergenic not near genes chr2L 11717258 intergenic not near genes chr2L 11721007 intergenic CR44143 + chr2L_9_11715001 chr2L_11715001 RAL-787 185 chr2L 11750325 11750339 chr2L 11750611 11750625 6 285 2.5 0.0 1.2 2.7 300 chr2L 11750325 intergenic not near genes chr2L 11750475 intergenic not near genes chr2L 11750625 intergenic not near genes chr2L_6_11750001 chr2L_11750001 RAL-787 186 chr2L 11770604 11770631 chr2L 11770691 11770718 13 86 2.0 3.0 2.5 3.7 114 chr2L 11770604 intergenic not near genes chr2L 11770661 intergenic not near genes chr2L 11770718 intergenic not near genes chr2L_13_11770001 chr2L_11770001 RAL-787 187 chr2L 11820432 11820467 chr2L 11820512 11820547 8 80 2.0 2.5 2.2 2.5 115 chr2L 11820432 intron Pde1c - chr2L 11820490 intron Pde1c - chr2L 11820547 intron Pde1c - chr2L_8_11820001 chr2L_11820001 RAL-787 188 chr2L 12022084 12022115 chr2L 12022759 12022789 9 674 2.5 3.5 3.0 2.2 705 chr2L 12022084 intergenic not near genes chr2L 12022436 intergenic not near genes chr2L 12022789 intergenic not near genes chr2L_9_12020001 chr2L_12020001 RAL-787 189 chr2L 12067332 12067359 chr2L 12074383 12074411 297 7 7052 2.0 0.5 1.2 3.2 7079 chr2L 12067332 intergenic not near genes chr2L 12070872 intergenic not near genes chr2L 12074411 intergenic not near genes chr2L_7_12070001 chr2L_12070001 RAL-787 190 chr2L 12086728 12086758 chr2L 12086836 12086872 9 112 1.5 2.5 2.0 3.0 144 chr2L 12086728 5` UTR CR44593 + chr2L 12086800 5` UTR CR44593 + chr2L 12086872 5` UTR CR44593 + chr2L_9_12085001 chr2L_12085001 RAL-787 191 chr2L 12141190 12141210 chr2L 12141270 12141290 6 80 4.0 0.5 2.2 1.9 100 chr2L 12141190 intergenic not near genes chr2L 12141240 intergenic not near genes chr2L 12141290 intergenic not near genes chr2L_6_12140001 chr2L_12140001 RAL-787 192 chr2L 12269363 12269390 chr2L 12269457 12269484 4 94 1.5 0.5 1.0 2.0 121 chr2L 12269363 intron aret + chr2L 12269424 intron aret + chr2L 12269484 intron aret + chr2L_4_12265001 chr2L_12265001 RAL-787 193 chr2L 12307031 12307047 chr2L 12307115 12307131 5 84 3.0 3.0 3.0 1.2 100 chr2L 12307031 intron aret + chr2L 12307081 intron aret + chr2L 12307131 intron aret + chr2L_5_12305001 chr2L_12305001 RAL-787 194 chr2L 12364679 12364684 chr2L 12364797 12364799 4 118 9.5 2.5 6.0 0.6 120 chr2L 12364679 intron bru-2 + chr2L 12364739 intron bru-2 + chr2L 12364799 intron bru-2 + chr2L_4_12360001 chr2L_12360001 RAL-787 195 chr2L 12364686 12364707 chr2L 12364796 12364826 6 118 3.5 2.5 3.0 1.5 140 chr2L 12364686 intron bru-2 + chr2L 12364756 intron bru-2 + chr2L 12364826 intron bru-2 + chr2L_6_12360001 chr2L_12360001 RAL-787 196 chr2L 12366881 12366892 chr2L 12366967 12366978 4 86 1.5 3.0 2.2 1.2 97 chr2L 12366881 intron bru-2 + chr2L 12366930 intron bru-2 + chr2L 12366978 intron bru-2 + chr2L_4_12365001 chr2L_12365001 RAL-787 197 chr2L 12454135 12454152 chr2L 12454215 12454232 8 79 7.5 7.5 7.5 0.9 97 chr2L 12454135 intergenic not near genes chr2L 12454184 intergenic not near genes chr2L 12454232 intergenic not near genes chr2L_8_12450001 chr2L_12450001 RAL-787 198 chr2L 12471133 12471141 chr2L 12471209 12471216 6 75 0.5 6.0 3.2 1.4 83 chr2L 12471133 intron bun - chr2L 12471174 intron bun - chr2L 12471216 intron bun - chr2L_6_12470001 chr2L_12470001 RAL-787 199 chr2L 12487897 12487917 chr2L 12487966 12487998 4 74 2.5 2.5 2.5 1.1 101 chr2L 12487897 intron bun - chr2L 12487948 intron bun - chr2L 12487998 intron bun - chr2L_4_12485001 chr2L_12485001 RAL-787 200 chr2L 12491494 12491512 chr2L 12491591 12491609 6 97 1.0 2.0 1.5 2.4 115 chr2L 12491494 intron bun - chr2L 12491552 intron bun - chr2L 12491609 intron bun - chr2L_6_12490001 chr2L_12490001 RAL-787 201 chr2L 12529246 12529447 chr2L 12529379 12529523 10 81 1.5 2.5 2.0 3.3 277 chr2L 12529246 intron bun - chr2L 12529384 intron bun - chr2L 12529523 intron bun - chr2L_10_12525001 chr2L_12525001 RAL-787 202 chr2L 12558326 12558353 chr2L 12565455 12565479 HMS-Beagle 12 7128 1.0 0.5 0.8 6.7 7153 chr2L 12558326 intergenic not near genes chr2L 12561902 intergenic not near genes chr2L 12565479 intergenic not near genes chr2L_12_12560001 chr2L_12560001 RAL-787 203 chr2L 12638788 12638803 chr2L 12638891 12638905 6 102 1.0 2.0 1.5 2.4 117 chr2L 12638788 intron Ref2 - chr2L 12638846 intron Ref2 - chr2L 12638905 intron Ref2 - chr2L_6_12635001 chr2L_12635001 RAL-787 204 chr2L 12731060 12731091 chr2L 12735827 12735858 F-element 9 4767 1.5 5.5 3.5 2.0 4798 chr2L 12731060 intron MRP + chr2L 12733459 intron MRP + chr2L 12735858 intron MRP + chr2L_9_12730001 chr2L_12730001 RAL-787 205 chr2L 12739174 12739201 chr2L 12743955 12743982 Doc 11 4780 2.5 4.5 3.5 2.4 4808 chr2L 12739174 exon MRP + chr2L 12741578 intron MRP + chr2L 12743982 exon MRP + chr2L_11_12740001 chr2L_12740001 RAL-787 206 chr2L 12751311 12751330 chr2L 12751394 12751413 9 83 2.5 2.5 2.5 2.6 102 chr2L 12751311 intergenic not near genes chr2L 12751362 intergenic not near genes chr2L 12751413 intergenic not near genes chr2L_9_12750001 chr2L_12750001 RAL-787 207 chr2L 12763865 12763873 chr2L 12764064 12764073 BS 5 200 0.0 0.0 0.0 5.0 208 chr2L 12763865 intergenic not near genes chr2L 12763969 intergenic not near genes chr2L 12764073 intergenic not near genes chr2L_5_12760001 chr2L_12760001 RAL-787 208 chr2L 12835553 12835564 chr2L 12835662 12835673 5 109 2.5 2.0 2.2 1.6 120 chr2L 12835553 intergenic not near genes chr2L 12835613 intergenic not near genes chr2L 12835673 intergenic not near genes chr2L_5_12835001 chr2L_12835001 RAL-787 209 chr2L 12861693 12861721 chr2L 12863160 12863183 hobo 10 1464 5.5 4.5 5.0 1.7 1490 chr2L 12861693 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863183 intergenic not near genes chr2L_10_12860001 chr2L_12860001 RAL-787 210 chr2L 12933848 12933883 chr2L 12941315 12941335 blood 10 7464 4.5 3.5 4.0 2.0 7487 chr2L 12933848 intergenic not near genes chr2L 12937592 intergenic not near genes chr2L 12941335 intergenic not near genes chr2L_10_12935001 chr2L_12935001 RAL-787 211 chr2L 13036246 13036275 chr2L 13036487 13036517 X-element 7 241 2.0 2.0 2.0 2.3 271 chr2L 13036246 intron CG9932 - chr2L 13036382 intron CG9932 - chr2L 13036517 intron CG9932 - chr2L_7_13035001 chr2L_13035001 RAL-787 212 chr2L 13047951 13047981 chr2L 13048076 13048106 7 124 1.5 3.5 2.5 2.0 155 chr2L 13047951 intron CG9932 - chr2L 13048028 intron CG9932 - chr2L 13048106 intron CG9932 - chr2L_7_13045001 chr2L_13045001 RAL-787 213 chr2L 13069275 13069303 chr2L 13069396 13069419 9 115 2.5 5.0 3.8 1.9 144 chr2L 13069275 intergenic not near genes chr2L 13069347 intergenic not near genes chr2L 13069419 intergenic not near genes chr2L_9_13065001 chr2L_13065001 RAL-787 214 chr2L 13077570 13077602 chr2L 13078164 13078195 9 594 2.5 1.0 1.8 3.2 625 chr2L 13077570 intergenic not near genes chr2L 13077882 intergenic not near genes chr2L 13078195 intergenic not near genes chr2L_9_13075001 chr2L_13075001 RAL-787 215 chr2L 13152232 13152260 chr2L 13152307 13152336 9 76 2.0 1.5 1.8 3.2 104 chr2L 13152232 intergenic not near genes chr2L 13152284 intergenic not near genes chr2L 13152336 intergenic not near genes chr2L_9_13150001 chr2L_13150001 RAL-787 216 chr2L 13185330 13185351 chr2L 13185409 13185430 7 79 2.5 5.5 4.0 1.4 100 chr2L 13185330 3` UTR CG16974 - chr2L 13185380 3` UTR CG16974 - chr2L 13185430 exon CG16974 - chr2L_7_13185001 chr2L_13185001 RAL-787 217 chr2L 13231887 13231914 chr2L 13231997 13232024 11 111 3.0 3.0 3.0 2.8 137 chr2L 13231887 intergenic Prosalpha6T + chr2L 13231956 intergenic Prosalpha6T + chr2L 13232024 intergenic Prosalpha6T + chr2L_11_13230001 chr2L_13230001 RAL-787 218 chr2L 13266380 13266397 chr2L 13266468 13266485 7 86 2.0 4.5 3.2 1.7 105 chr2L 13266380 intron CG44085 + chr2L 13266432 intron CG44085 + chr2L 13266485 intron CG44085 + chr2L_7_13265001 chr2L_13265001 RAL-787 219 chr2L 13346046 13346052 chr2L 13346128 13346135 4 83 5.0 4.0 4.5 0.7 89 chr2L 13346046 intergenic not near genes chr2L 13346090 intergenic not near genes chr2L 13346135 intergenic not near genes chr2L_4_13345001 chr2L_13345001 RAL-787 220 chr2L 13351817 13351842 chr2L 13351903 13351928 11 86 4.5 5.0 4.8 1.9 111 chr2L 13351817 exon CG9395 - chr2L 13351872 intron CG9395 - chr2L 13351928 intron CG9395 - chr2L_11_13350001 chr2L_13350001 RAL-787 221 chr2L 13405647 13405681 chr2L 13410443 13410478 Doc 12 4795 3.0 0.5 1.8 4.3 4831 chr2L 13405647 exon CG7110 + chr2L 13408062 intron CG7110 + chr2L 13410478 intron CG7110 + chr2L_12_13405001 chr2L_13405001 RAL-787 222 chr2L 13422487 13422505 chr2L 13422566 13422584 7 79 0.5 3.0 1.8 2.5 97 chr2L 13422487 intron CG42784 + chr2L 13422536 intron CG42784 + chr2L 13422584 intron CG42784 + chr2L_7_13420001 chr2L_13420001 RAL-787 223 chr2L 13481455 13481474 chr2L 13482061 13482081 jockey 7 607 4.0 6.0 5.0 1.2 626 chr2L 13481455 intron CG42784 + chr2L 13481768 intron CG42784 + chr2L 13482081 intron CG42784 + chr2L_7_13480001 chr2L_13480001 RAL-787 224 chr2L 13696689 13696723 chr2L 13696775 13696809 8 84 1.0 2.0 1.5 3.2 120 chr2L 13696689 intron CG31814 - chr2L 13696749 intron CG31814 - chr2L 13696809 intron CG31814 - chr2L_8_13695001 chr2L_13695001 RAL-787 225 chr2L 13699577 13699587 chr2L 13699631 13699663 9 68 2.0 2.5 2.2 2.8 86 chr2L 13699577 intron CG31814 - chr2L 13699620 intron CG31814 - chr2L 13699663 intron CG31814 - chr2L_9_13695001 chr2L_13695001 RAL-787 226 chr2L 13713260 13713291 chr2L 13713372 13713402 4 111 0.0 2.5 1.2 1.8 142 chr2L 13713260 intron CG31814 - chr2L 13713331 intron CG31814 - chr2L 13713402 intron CG31814 - chr2L_4_13710001 chr2L_13710001 RAL-787 227 chr2L 13761804 13761828 chr2L 13762915 13762939 Doc 11 1111 4.5 2.0 3.2 2.6 1135 chr2L 13761804 intron TM9SF4 + chr2L 13762372 intron TM9SF4 + chr2L 13762939 intron TM9SF4 + chr2L_11_13760001 chr2L_13760001 RAL-787 228 chr2L 13853094 13853109 chr2L 13862244 13862258 roo 6 9149 8.0 2.5 5.2 1.0 9164 chr2L 13853094 intron CenG1A + chr2L 13857676 intron CenG1A + chr2L 13862258 intron CenG1A + chr2L_6_13855001 chr2L_13855001 RAL-787 229 chr2L 13853110 13853115 chr2L 13862243 13862265 roo 7 9146 5.5 2.5 4.0 1.4 9155 chr2L 13853110 intron CenG1A + chr2L 13857688 intron CenG1A + chr2L 13862265 intron CenG1A + chr2L_7_13855001 chr2L_13855001 RAL-787 230 chr2L 13913588 13913603 chr2L 13913701 13913715 7 113 4.5 3.0 3.8 1.5 127 chr2L 13913588 intergenic not near genes chr2L 13913652 intergenic not near genes chr2L 13913715 intergenic not near genes chr2L_7_13910001 chr2L_13910001 RAL-787 231 chr2L 13918819 13918827 chr2L 13918906 13918913 5 87 4.5 2.5 3.5 1.1 94 chr2L 13918819 intron Ance-3 + chr2L 13918866 intron Ance-3 + chr2L 13918913 intron Ance-3 + chr2L_5_13915001 chr2L_13915001 RAL-787 232 chr2L 13981520 13981553 chr2L 13981611 13981644 9 90 2.5 2.0 2.2 2.8 124 chr2L 13981520 exon NimC2 + chr2L 13981582 intron NimC2 + chr2L 13981644 intron NimC2 + chr2L_9_13980001 chr2L_13980001 RAL-787 233 chr2L 14017770 14017796 chr2L 14017862 14017888 6 92 3.5 2.5 3.0 1.5 118 chr2L 14017770 intron bgm + chr2L 14017829 intron bgm + chr2L 14017888 intron bgm + chr2L_6_14015001 chr2L_14015001 RAL-787 234 chr2L 14236237 14236252 chr2L 14236334 14236348 5 97 4.0 0.0 2.0 1.7 111 chr2L 14236237 5` UTR CR44728 + chr2L 14236292 5` UTR CR44728 + chr2L 14236348 intergenic CR44728 + chr2L_5_14235001 chr2L_14235001 RAL-787 235 chr2L 14395567 14395589 chr2L 14395652 14395674 8 84 0.0 1.5 0.8 4.4 107 chr2L 14395567 intron elB - chr2L 14395620 intron elB - chr2L 14395674 intron elB - chr2L_8_14395001 chr2L_14395001 RAL-787 236 chr2L 14502365 14502378 chr2L 14502441 14502445 5 81 0.0 1.5 0.8 2.8 80 chr2L 14502365 intergenic not near genes chr2L 14502405 intergenic not near genes chr2L 14502445 intergenic not near genes chr2L_5_14500001 chr2L_14500001 RAL-787 237 chr2L 14642571 14642602 chr2L 14651734 14651758 roo 12 9161 2.0 2.0 2.0 4.0 9187 chr2L 14642571 intron osp - chr2L 14647164 intron osp - chr2L 14651758 intron osp - chr2L_12_14645001 chr2L_14645001 RAL-787 238 chr2L 14667764 14667787 chr2L 14667846 14667868 4 80 2.0 1.5 1.8 1.4 104 chr2L 14667764 intron osp - chr2L 14667816 intron osp - chr2L 14667868 intron osp - chr2L_4_14665001 chr2L_14665001 RAL-787 239 chr2L 14707216 14707240 chr2L 14707335 14707358 8 118 2.0 2.0 2.0 2.7 142 chr2L 14707216 intergenic not near genes chr2L 14707287 intergenic not near genes chr2L 14707358 intergenic not near genes chr2L_8_14705001 chr2L_14705001 RAL-787 240 chr2L 14765238 14765273 chr2L 14765317 14765353 15 80 1.5 1.5 1.5 6.0 115 chr2L 14765238 intergenic not near genes chr2L 14765296 intergenic not near genes chr2L 14765353 intergenic not near genes chr2L_15_14765001 chr2L_14765001 RAL-787 241 chr2L 14803891 14803906 chr2L 14809087 14809109 copia 7 5199 3.0 7.0 5.0 1.2 5218 chr2L 14803891 intergenic not near genes chr2L 14806500 intergenic not near genes chr2L 14809109 intergenic not near genes chr2L_7_14805001 chr2L_14805001 RAL-787 242 chr2L 14840976 14841010 chr2L 14841063 14841097 6 87 1.5 3.0 2.2 1.9 121 chr2L 14840976 3` UTR CR43805 - chr2L 14841036 3` UTR CR43805 - chr2L 14841097 3` UTR CR43805 - chr2L_6_14840001 chr2L_14840001 RAL-787 243 chr2L 14889953 14889988 chr2L 14890378 14890413 jockey 11 423 2.0 2.5 2.2 3.4 460 chr2L 14889953 intergenic not near genes chr2L 14890183 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_11_14890001 chr2L_14890001 RAL-787 244 chr2L 14933376 14933386 chr2L 14933454 14933464 4 78 2.5 2.0 2.2 1.2 88 chr2L 14933376 intron CG42313 - chr2L 14933420 intron CG42313 - chr2L 14933464 intron CG42313 - chr2L_4_14930001 chr2L_14930001 RAL-787 245 chr2L 14984383 14984393 chr2L 14991985 14991995 opus 5 7601 7.5 2.5 5.0 0.8 7612 chr2L 14984383 intron mol - chr2L 14988189 intron mol - chr2L 14991995 intron mol - chr2L_5_14985001 chr2L_14985001 RAL-787 246 chr2L 15031553 15031579 chr2L 15031793 15031819 8 240 3.5 1.0 2.2 2.5 266 chr2L 15031553 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031686 intron,exon GABA-B-R1 +,CG31832 - chr2L 15031819 intron GABA-B-R1 + chr2L_8_15030001 chr2L_15030001 RAL-787 247 chr2L 15044709 15044741 chr2L 15044785 15044817 9 76 1.0 0.0 0.5 6.0 108 chr2L 15044709 intergenic ck - chr2L 15044763 intergenic ck - chr2L 15044817 intergenic ck - chr2L_9_15040001 chr2L_15040001 RAL-787 248 chr2L 15080904 15080915 chr2L 15080997 15081008 4 93 1.5 0.0 0.8 2.2 104 chr2L 15080904 intron CG15270 + chr2L 15080956 intron CG15270 + chr2L 15081008 intron CG15270 + chr2L_4_15080001 chr2L_15080001 RAL-787 249 chr2L 15083943 15083973 chr2L 15084900 15084930 7 956 3.0 2.0 2.5 2.0 987 chr2L 15083943 intron CG15270 + chr2L 15084436 intron CG15270 + chr2L 15084930 intron CG15270 + chr2L_7_15080001 chr2L_15080001 RAL-787 250 chr2L 15128865 15128883 chr2L 15128945 15128963 7 80 3.0 0.0 1.5 2.8 98 chr2L 15128865 intergenic not near genes chr2L 15128914 intergenic not near genes chr2L 15128963 intergenic not near genes chr2L_7_15125001 chr2L_15125001 RAL-787 251 chr2L 15138800 15138803 chr2L 15138878 15138889 4 82 0.0 2.5 1.2 1.8 89 chr2L 15138800 intergenic not near genes chr2L 15138844 intergenic not near genes chr2L 15138889 intergenic not near genes chr2L_4_15135001 chr2L_15135001 RAL-787 252 chr2L 15241512 15241538 chr2L 15241605 15241628 5 88 0.0 2.5 1.2 2.3 116 chr2L 15241512 exon ZnT35C - chr2L 15241570 intron ZnT35C - chr2L 15241628 intron ZnT35C - chr2L_5_15240001 chr2L_15240001 RAL-787 253 chr2L 15375830 15375844 chr2L 15375942 15375956 4 112 0.5 2.5 1.5 1.6 126 chr2L 15375830 intergenic not near genes chr2L 15375893 intergenic not near genes chr2L 15375956 intergenic not near genes chr2L_4_15375001 chr2L_15375001 RAL-787 254 chr2L 15446050 15446076 chr2L 15453519 15453544 blood 4 7469 3.5 0.5 2.0 1.3 7494 chr2L 15446050 intergenic not near genes chr2L 15449797 intergenic not near genes chr2L 15453544 intergenic not near genes chr2L_4_15445001 chr2L_15445001 RAL-787 255 chr2L 15482590 15482605 chr2L 15482726 15482741 4 136 2.0 1.5 1.8 1.4 151 chr2L 15482590 intergenic not near genes chr2L 15482666 intergenic not near genes chr2L 15482741 intergenic not near genes chr2L_4_15480001 chr2L_15480001 RAL-787 256 chr2L 15514318 15514330 chr2L 15514402 15514414 9 84 3.5 5.0 4.2 1.7 96 chr2L 15514318 intergenic not near genes chr2L 15514366 intergenic not near genes chr2L 15514414 intergenic not near genes chr2L_9_15510001 chr2L_15510001 RAL-787 257 chr2L 15559007 15559038 chr2L 15559089 15559123 9 84 1.5 3.5 2.5 2.6 116 chr2L 15559007 intron kek3 + chr2L 15559065 intron kek3 + chr2L 15559123 intron kek3 + chr2L_9_15555001 chr2L_15555001 RAL-787 258 chr2L 15761099 15761108 chr2L 15761178 15761188 4 80 0.0 2.0 1.0 2.0 89 chr2L 15761099 intron Gli - chr2L 15761144 intron Gli - chr2L 15761188 intron Gli - chr2L_4_15760001 chr2L_15760001 RAL-787 259 chr2L 15804986 15805010 chr2L 15805074 15805095 7 87 2.0 2.5 2.2 2.2 109 chr2L 15804986 intergenic not near genes chr2L 15805040 intergenic not near genes chr2L 15805095 intergenic not near genes chr2L_7_15805001 chr2L_15805001 RAL-787 260 chr2L 15916711 15916721 chr2L 15916794 15916798 5 82 2.0 5.0 3.5 1.1 87 chr2L 15916711 intron beat-Ib - chr2L 15916754 intron beat-Ib - chr2L 15916798 intron beat-Ib - chr2L_5_15915001 chr2L_15915001 RAL-787 261 chr2L 15956024 15956042 chr2L 15957491 15957509 hobo 7 1467 9.0 1.5 5.2 1.1 1485 chr2L 15956024 intron beat-Ib - chr2L 15956766 intron beat-Ib - chr2L 15957509 intron beat-Ib - chr2L_7_15955001 chr2L_15955001 RAL-787 262 chr2L 15956049 15956055 chr2L 15957488 15957520 hobo 4 1458 7.0 1.5 4.2 0.8 1471 chr2L 15956049 intron beat-Ib - chr2L 15956784 intron beat-Ib - chr2L 15957520 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-787 263 chr2L 16022073 16022097 chr2L 16022179 16022203 11 105 4.5 1.5 3.0 2.8 130 chr2L 16022073 intron beat-Ic + chr2L 16022138 intron beat-Ic + chr2L 16022203 intron beat-Ic + chr2L_11_16020001 chr2L_16020001 RAL-787 264 chr2L 16058132 16058149 chr2L 16058270 16058290 8 141 1.5 2.5 2.0 2.7 158 chr2L 16058132 intron beat-Ia + chr2L 16058211 intron beat-Ia + chr2L 16058290 intron beat-Ia + chr2L_8_16055001 chr2L_16055001 RAL-787 265 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 10 145889 20.5 19.5 20.0 0.5 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_16140001 chr2L_16140001 RAL-787 266 chr2L 16141171 16141196 chr2L 16146378 16146402 copia 6 5206 3.0 1.5 2.2 1.9 5231 chr2L 16141171 intergenic not near genes chr2L 16143786 intergenic not near genes chr2L 16146402 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-787 267 chr2L 16153741 16153749 chr2L 16160795 16160803 297 4 7054 4.5 3.0 3.8 0.8 7062 chr2L 16153741 intergenic not near genes chr2L 16157272 intergenic not near genes chr2L 16160803 intergenic not near genes chr2L_4_16155001 chr2L_16155001 RAL-787 268 chr2L 9084336 9084340 chr2L 16217660 16217660 14 7133321 14.0 19.5 16.8 0.8 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_14_12650001 chr2L_12650001 RAL-787 269 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 20.5 19.5 20.0 0.3 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-787 270 chr2L 16217660 16217660 chr2L 18622718 18622719 4 2405058 21.0 15.0 18.0 0.2 2405059 chr2L 16217660 intergenic not near genes chr2L 17420190 intron Dif - chr2L 18622719 intron MESR3 + chr2L_4_17420001 chr2L_17420001 RAL-787 271 chr2L 16278725 16278757 chr2L 16278814 16278846 8 89 2.5 5.0 3.8 1.7 121 chr2L 16278725 intron crp - chr2L 16278786 intron crp - chr2L 16278846 intron crp - chr2L_8_16275001 chr2L_16275001 RAL-787 272 chr2L 16280255 16280282 chr2L 16281426 16281453 1360 5 1168 3.0 5.0 4.0 1.0 1198 chr2L 16280255 intron crp - chr2L 16280854 intron crp - chr2L 16281453 intron crp - chr2L_5_16280001 chr2L_16280001 RAL-787 273 chr2L 16363962 16363973 chr2L 16364208 16364219 4 246 0.0 1.5 0.8 2.2 257 chr2L 16363962 intergenic not near genes chr2L 16364090 intergenic not near genes chr2L 16364219 intergenic not near genes chr2L_4_16360001 chr2L_16360001 RAL-787 274 chr2L 16384494 16384518 chr2L 16384583 16384600 9 88 3.5 3.5 3.5 2.0 106 chr2L 16384494 intergenic not near genes chr2L 16384547 intergenic not near genes chr2L 16384600 intergenic not near genes chr2L_9_16380001 chr2L_16380001 RAL-787 275 chr2L 16544117 16544146 chr2L 16544196 16544223 4 78 2.0 1.5 1.8 1.4 106 chr2L 16544117 intergenic not near genes chr2L 16544170 intergenic not near genes chr2L 16544223 intergenic not near genes chr2L_4_16540001 chr2L_16540001 RAL-787 276 chr2L 16709095 16709103 chr2L 16709179 16709187 5 84 1.5 4.0 2.8 1.3 92 chr2L 16709095 intron CG31808 - chr2L 16709141 intron CG31808 - chr2L 16709187 intron CG31808 - chr2L_5_16705001 chr2L_16705001 RAL-787 277 chr2L 17000120 17000128 chr2L 17000240 17000250 6 122 5.0 1.0 3.0 1.5 130 chr2L 17000120 intergenic not near genes chr2L 17000185 intergenic not near genes chr2L 17000250 intergenic not near genes chr2L_6_17000001 chr2L_17000001 RAL-787 278 chr2L 17158733 17158764 chr2L 17158835 17158866 4 102 1.5 0.5 1.0 2.0 133 chr2L 17158733 5` UTR,exon CG34106 +,beat-IIIa + chr2L 17158800 intron,intron CG34106 +,beat-IIIa + chr2L 17158866 intron,intron CG34106 +,beat-IIIa + chr2L_4_17155001 chr2L_17155001 RAL-787 279 chr2L 17199165 17199187 chr2L 17200632 17200653 hobo 4 1467 2.5 0.5 1.5 1.6 1488 chr2L 17199165 intron beat-IIIc - chr2L 17199909 intron beat-IIIc - chr2L 17200653 intron beat-IIIc - chr2L_4_17195001 chr2L_17195001 RAL-787 280 chr2L 17260878 17260907 chr2L 17260961 17260990 9 82 0.0 0.5 0.2 7.5 112 chr2L 17260878 intergenic beat-IIIc - chr2L 17260934 intergenic beat-IIIc - chr2L 17260990 intergenic beat-IIIc - chr2L_9_17260001 chr2L_17260001 RAL-787 281 chr2L 17273189 17273227 chr2L 17277972 17278001 F-element 16 4782 3.0 3.0 3.0 4.0 4812 chr2L 17273189 intergenic not near genes chr2L 17275595 intergenic not near genes chr2L 17278001 intergenic not near genes chr2L_16_17275001 chr2L_17275001 RAL-787 282 chr2L 17425190 17425204 chr2L 17425530 17425550 7 344 1.5 3.5 2.5 2.0 360 chr2L 17425190 intron Dif - chr2L 17425370 intron Dif - chr2L 17425550 intron Dif - chr2L_7_17425001 chr2L_17425001 RAL-787 283 chr2L 17425771 17425790 chr2L 17425898 17425917 6 127 2.0 1.5 1.8 2.1 146 chr2L 17425771 intron Dif - chr2L 17425844 intron Dif - chr2L 17425917 intron Dif - chr2L_6_17425001 chr2L_17425001 RAL-787 284 chr2L 17432013 17432040 chr2L 17432120 17432147 1360 5 107 0.0 0.0 0.0 5.0 134 chr2L 17432013 intron Dif - chr2L 17432080 intron Dif - chr2L 17432147 intron Dif - chr2L_5_17430001 chr2L_17430001 RAL-787 285 chr2L 17543596 17543622 chr2L 17543685 17543701 6 82 2.0 4.5 3.2 1.4 105 chr2L 17543596 intergenic not near genes chr2L 17543648 intergenic not near genes chr2L 17543701 intergenic not near genes chr2L_6_17540001 chr2L_17540001 RAL-787 286 chr2L 17594395 17594414 chr2L 17594492 17594511 4 97 1.0 5.0 3.0 1.0 116 chr2L 17594395 intron Sytalpha + chr2L 17594453 intron Sytalpha + chr2L 17594511 intron Sytalpha + chr2L_4_17590001 chr2L_17590001 RAL-787 287 chr2L 17623363 17623390 chr2L 17623444 17623471 9 80 3.5 0.5 2.0 3.0 108 chr2L 17623363 intergenic not near genes chr2L 17623417 intergenic not near genes chr2L 17623471 intergenic not near genes chr2L_9_17620001 chr2L_17620001 RAL-787 288 chr2L 17727759 17727783 chr2L 17729448 17729472 hobo 5 1689 1.5 2.0 1.8 1.8 1713 chr2L 17727759 intron CadN - chr2L 17728616 intron CadN - chr2L 17729472 intron CadN - chr2L_5_17725001 chr2L_17725001 RAL-787 289 chr2L 17819930 17819951 chr2L 17825133 17825154 copia 9 5203 1.0 2.0 1.5 3.6 5224 chr2L 17819930 intron CadN2 - chr2L 17822542 intron CadN2 - chr2L 17825154 intron CadN2 - chr2L_9_17820001 chr2L_17820001 RAL-787 290 chr2L 17842281 17842309 chr2L 17842366 17842382 6 78 1.0 2.5 1.8 2.1 101 chr2L 17842281 intron CadN2 - chr2L 17842332 intron CadN2 - chr2L 17842382 intron CadN2 - chr2L_6_17840001 chr2L_17840001 RAL-787 291 chr2L 17874444 17874461 chr2L 17874575 17874582 5 133 6.5 2.0 4.2 1.0 138 chr2L 17874444 intron CadN2 - chr2L 17874513 intron CadN2 - chr2L 17874582 intron CadN2 - chr2L_5_17870001 chr2L_17870001 RAL-787 292 chr2L 17880006 17880031 chr2L 17880093 17880116 7 87 0.0 3.0 1.5 2.8 110 chr2L 17880006 intergenic not near genes chr2L 17880061 intergenic not near genes chr2L 17880116 intergenic not near genes chr2L_7_17880001 chr2L_17880001 RAL-787 293 chr2L 17911961 17911967 chr2L 17914139 17914142 pogo 4 2177 5.5 1.5 3.5 0.9 2181 chr2L 17911961 intergenic not near genes chr2L 17913052 intergenic not near genes chr2L 17914142 intergenic CG43271 - chr2L_4_17910001 chr2L_17910001 RAL-787 294 chr2L 18051877 18051905 chr2L 18061024 18061048 roo 6 9145 4.0 3.5 3.8 1.2 9171 chr2L 18051877 intron rdo + chr2L 18056462 intron rdo + chr2L 18061048 intron rdo + chr2L_6_18055001 chr2L_18055001 RAL-787 295 chr2L 18111248 18111260 chr2L 18111339 18111351 4 91 2.0 3.0 2.5 1.1 103 chr2L 18111248 intergenic not near genes chr2L 18111300 intergenic not near genes chr2L 18111351 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-787 296 chr2L 18197485 18197506 chr2L 18197564 18197585 8 79 2.0 5.0 3.5 1.8 100 chr2L 18197485 intron CG42750 - chr2L 18197535 intron CG42750 - chr2L 18197585 intron CG42750 - chr2L_8_18195001 chr2L_18195001 RAL-787 297 chr2L 18221645 18221659 chr2L 18221723 18221737 5 78 0.0 4.0 2.0 1.7 92 chr2L 18221645 intron CG42750 - chr2L 18221691 intron CG42750 - chr2L 18221737 intron CG42750 - chr2L_5_18220001 chr2L_18220001 RAL-787 298 chr2L 18239956 18239968 chr2L 18240039 18240051 6 83 3.5 0.0 1.8 2.1 95 chr2L 18239956 intron CG42750 - chr2L 18240004 intron CG42750 - chr2L 18240051 intron CG42750 - chr2L_6_18240001 chr2L_18240001 RAL-787 299 chr2L 18243373 18243400 chr2L 18243450 18243477 6 77 2.5 0.0 1.2 2.7 104 chr2L 18243373 intron CG42750 - chr2L 18243425 intron CG42750 - chr2L 18243477 intron CG42750 - chr2L_6_18240001 chr2L_18240001 RAL-787 300 chr2L 18315274 18315281 chr2L 18315354 18315360 5 79 1.5 4.0 2.8 1.3 86 chr2L 18315274 intergenic not near genes chr2L 18315317 intergenic not near genes chr2L 18315360 intergenic not near genes chr2L_5_18315001 chr2L_18315001 RAL-787 301 chr2L 18393981 18394012 chr2L 18394060 18394092 21 79 1.5 1.0 1.2 9.5 111 chr2L 18393981 intergenic not near genes chr2L 18394036 intergenic not near genes chr2L 18394092 intergenic not near genes chr2L_21_18390001 chr2L_18390001 RAL-787 302 chr2L 18408022 18408052 chr2L 18412806 18412836 Doc 10 4784 5.0 0.0 2.5 2.9 4814 chr2L 18408022 intergenic not near genes chr2L 18410429 intergenic not near genes chr2L 18412836 intergenic not near genes chr2L_10_18410001 chr2L_18410001 RAL-787 303 chr2L 18431426 18431454 chr2L 18431525 18431527 5 94 2.0 2.0 2.0 1.7 101 chr2L 18431426 intergenic not near genes chr2L 18431476 intergenic not near genes chr2L 18431527 intergenic not near genes chr2L_5_18430001 chr2L_18430001 RAL-787 304 chr2L 18442349 18442373 chr2L 18442427 18442452 6 79 1.0 4.5 2.8 1.6 103 chr2L 18442349 3` UTR RpS26 - chr2L 18442400 3` UTR RpS26 - chr2L 18442452 3` UTR RpS26 - chr2L_6_18440001 chr2L_18440001 RAL-787 305 chr2L 18449394 18449417 chr2L 18449495 18449518 6 101 1.0 2.5 1.8 2.1 124 chr2L 18449394 intergenic bsf -,ncm - chr2L 18449456 intergenic bsf -,ncm - chr2L 18449518 3` UTR bsf - chr2L_6_18445001 chr2L_18445001 RAL-787 306 chr2L 18641835 18641865 chr2L 18642055 18642085 7 220 0.5 0.5 0.5 4.7 250 chr2L 18641835 intron MESR3 + chr2L 18641960 intron MESR3 + chr2L 18642085 intron MESR3 + chr2L_7_18640001 chr2L_18640001 RAL-787 307 chr2L 18711238 18711255 chr2L 18711359 18711376 4 120 1.5 5.0 3.2 1.0 138 chr2L 18711238 3` UTR,3` UTR Grip71 +,Irk3 - chr2L 18711307 3` UTR Irk3 - chr2L 18711376 exon Irk3 - chr2L_4_18710001 chr2L_18710001 RAL-787 308 chr2L 18745144 18745151 chr2L 18745231 18745238 4 87 3.5 2.0 2.8 1.1 94 chr2L 18745144 intergenic not near genes chr2L 18745191 intergenic not near genes chr2L 18745238 intergenic not near genes chr2L_4_18745001 chr2L_18745001 RAL-787 309 chr2L 18745152 18745167 chr2L 18745229 18745254 4 84 1.5 1.5 1.5 1.6 102 chr2L 18745152 intergenic not near genes chr2L 18745203 intergenic not near genes chr2L 18745254 intergenic not near genes chr2L_4_18745001 chr2L_18745001 RAL-787 310 chr2L 18791083 18791102 chr2L 18791157 18791180 4 76 1.5 4.0 2.8 1.1 97 chr2L 18791083 intron ham - chr2L 18791132 intron ham - chr2L 18791180 intron ham - chr2L_4_18790001 chr2L_18790001 RAL-787 311 chr2L 18812557 18812583 chr2L 18812820 18812846 15 263 2.5 2.0 2.2 4.7 289 chr2L 18812557 intergenic CG17325 +,CG42305 + chr2L 18812702 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812846 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_15_18810001 chr2L_18810001 RAL-787 312 chr2L 18883855 18883888 chr2L 18883937 18883970 10 81 2.5 2.0 2.2 3.1 115 chr2L 18883855 intergenic not near genes chr2L 18883912 intergenic not near genes chr2L 18883970 intergenic not near genes chr2L_10_18880001 chr2L_18880001 RAL-787 313 chr2L 19016253 19016266 chr2L 19016343 19016362 7 95 3.0 3.0 3.0 1.8 109 chr2L 19016253 intergenic not near genes chr2L 19016308 intergenic not near genes chr2L 19016362 intergenic not near genes chr2L_7_19015001 chr2L_19015001 RAL-787 314 chr2L 19035914 19035945 chr2L 19036004 19036033 4 89 5.0 3.5 4.2 0.8 119 chr2L 19035914 intron mib2 + chr2L 19035974 intron mib2 + chr2L 19036033 intron mib2 + chr2L_4_19035001 chr2L_19035001 RAL-787 315 chr2L 19142481 19142512 chr2L 19142571 19142600 10 90 3.5 1.5 2.5 2.9 119 chr2L 19142481 intron brat + chr2L 19142540 intron brat + chr2L 19142600 intron brat + chr2L_10_19140001 chr2L_19140001 RAL-787 316 chr2L 19189982 19190003 chr2L 19190136 19190156 5 153 0.5 3.5 2.0 1.7 174 chr2L 19189982 intergenic pigeon +,drl + chr2L 19190069 intergenic pigeon +,drl + chr2L 19190156 intergenic drl +,pigeon + chr2L_5_19190001 chr2L_19190001 RAL-787 317 chr2L 19237305 19237338 chr2L 19237404 19237430 7 97 1.5 2.5 2.0 2.3 125 chr2L 19237305 intergenic not near genes chr2L 19237368 intergenic not near genes chr2L 19237430 intergenic not near genes chr2L_7_19235001 chr2L_19235001 RAL-787 318 chr2L 19345025 19345038 chr2L 19357233 19357247 blood 7 12209 2.5 3.0 2.8 1.8 12222 chr2L 19345025 intron dnt - chr2L 19351136 intron dnt - chr2L 19357247 intron dnt - chr2L_7_19350001 chr2L_19350001 RAL-787 319 chr2L 19357547 19357568 chr2L 19357637 19357658 11 88 3.5 5.0 4.2 2.1 111 chr2L 19357547 intron dnt - chr2L 19357602 intron dnt - chr2L 19357658 intron dnt - chr2L_11_19355001 chr2L_19355001 RAL-787 320 chr2L 19407719 19407738 chr2L 19407916 19407935 7 196 4.5 5.0 4.8 1.2 216 chr2L 19407719 intron Pax - chr2L 19407827 intron Pax - chr2L 19407935 intron Pax - chr2L_7_19405001 chr2L_19405001 RAL-787 321 chr2L 19441067 19441082 chr2L 19441144 19441159 6 77 2.5 7.5 5.0 1.0 92 chr2L 19441067 intron CG10237 - chr2L 19441113 intron CG10237 - chr2L 19441159 5` UTR CG10237 - chr2L_6_19440001 chr2L_19440001 RAL-787 322 chr2L 19558530 19558541 chr2L 19558634 19558645 4 104 0.0 0.5 0.2 3.3 115 chr2L 19558530 intron Tep5 + chr2L 19558588 intron Tep5 + chr2L 19558645 intron Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-787 323 chr2L 19559405 19559412 chr2L 19559481 19559488 4 76 0.0 0.0 0.0 4.0 83 chr2L 19559405 exon Tep5 + chr2L 19559446 exon Tep5 + chr2L 19559488 exon Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-787 324 chr2L 19560004 19560035 chr2L 19560257 19560287 5 252 2.5 4.5 3.5 1.1 283 chr2L 19560004 exon Tep5 + chr2L 19560146 exon Tep5 + chr2L 19560287 intron Tep5 + chr2L_5_19560001 chr2L_19560001 RAL-787 325 chr2L 19560835 19560862 chr2L 19560915 19560942 8 80 3.0 2.0 2.5 2.3 107 chr2L 19560835 intron Tep5 + chr2L 19560888 exon Tep5 + chr2L 19560942 exon Tep5 + chr2L_8_19560001 chr2L_19560001 RAL-787 326 chr2L 19561345 19561368 chr2L 19561483 19561509 9 140 2.0 2.5 2.2 2.8 164 chr2L 19561345 exon Tep5 + chr2L 19561427 exon Tep5 + chr2L 19561509 exon Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-787 327 chr2L 19601571 19601599 chr2L 19601648 19601676 4 77 1.5 1.5 1.5 1.6 105 chr2L 19601571 intron,intron Lar +,CR44978 - chr2L 19601624 intron,intron Lar +,CR44978 - chr2L 19601676 intron,intron Lar +,CR44978 - chr2L_4_19600001 chr2L_19600001 RAL-787 328 chr2L 19620101 19620122 chr2L 19621090 19621110 jockey 6 986 8.5 9.0 8.8 0.6 1009 chr2L 19620101 intron Lar + chr2L 19620606 intron Lar + chr2L 19621110 intron Lar + chr2L_6_19620001 chr2L_19620001 RAL-787 329 chr2L 19652575 19652596 chr2L 19674009 19674030 opus 4 21434 4.0 1.5 2.8 1.1 21455 chr2L 19652575 intron Lar + chr2L 19663302 intron Lar + chr2L 19674030 intron Lar + chr2L_4_19660001 chr2L_19660001 RAL-787 330 chr2L 19689066 19689090 chr2L 19689170 19689194 7 104 2.0 3.5 2.8 1.8 128 chr2L 19689066 intron Lar + chr2L 19689130 intron Lar + chr2L 19689194 intron Lar + chr2L_7_19685001 chr2L_19685001 RAL-787 331 chr2L 19697146 19697169 chr2L 19697239 19697262 7 93 1.5 6.5 4.0 1.4 116 chr2L 19697146 intron Lar + chr2L 19697204 intron Lar + chr2L 19697262 intron Lar + chr2L_7_19695001 chr2L_19695001 RAL-787 332 chr2L 19703535 19703566 chr2L 19712671 19712702 roo 15 9136 4.0 2.5 3.2 3.6 9167 chr2L 19703535 intron Lar + chr2L 19708118 intron Lar + chr2L 19712702 intron Lar + chr2L_15_19705001 chr2L_19705001 RAL-787 333 chr2L 19737359 19737387 chr2L 19740820 19740854 1360 16 3464 2.5 3.0 2.8 4.2 3495 chr2L 19737359 intergenic Nf-YB + chr2L 19739106 intergenic not near genes chr2L 19740854 intergenic not near genes chr2L_16_19735001 chr2L_19735001 RAL-787 334 chr2L 19762811 19762832 chr2L 19763053 19763074 pogo 4 240 3.0 2.5 2.8 1.1 263 chr2L 19762811 5` UTR fbp - chr2L 19762942 intron fbp - chr2L 19763074 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-787 335 chr2L 19773167 19773191 chr2L 19773250 19773277 5 86 3.5 1.0 2.2 1.6 110 chr2L 19773167 intergenic not near genes chr2L 19773222 intergenic not near genes chr2L 19773277 intergenic not near genes chr2L_5_19770001 chr2L_19770001 RAL-787 336 chr2L 19824420 19824432 chr2L 19824503 19824515 4 83 0.5 5.5 3.0 1.0 95 chr2L 19824420 intron sick + chr2L 19824468 intron sick + chr2L 19824515 intron sick + chr2L_4_19820001 chr2L_19820001 RAL-787 337 chr2L 20000050 20000078 chr2L 20000137 20000156 9 85 3.0 2.5 2.8 2.4 106 chr2L 20000050 intron CG43861 - chr2L 20000103 intron CG43861 - chr2L 20000156 intron,3` UTR CG43861 -,CR44908 - chr2L_9_20000001 chr2L_20000001 RAL-787 338 chr2L 20057065 20057146 chr2L 20057129 20057241 5 88 0.0 0.0 0.0 5.0 176 chr2L 20057065 intergenic not near genes chr2L 20057153 intergenic not near genes chr2L 20057241 intergenic not near genes chr2L_5_20055001 chr2L_20055001 RAL-787 339 chr2L 20298822 20298854 chr2L 20298905 20298936 10 81 1.0 2.5 1.8 3.6 114 chr2L 20298822 intergenic not near genes chr2L 20298879 intergenic not near genes chr2L 20298936 intergenic not near genes chr2L_10_20295001 chr2L_20295001 RAL-787 340 chr2L 20303163 20303185 chr2L 20310631 20310650 blood 5 7467 1.0 3.5 2.2 1.6 7487 chr2L 20303163 intergenic not near genes chr2L 20306906 intergenic not near genes chr2L 20310650 intergenic not near genes chr2L_5_20305001 chr2L_20305001 RAL-787 341 chr2L 20310886 20310922 chr2L 20310966 20311001 7 80 0.0 3.0 1.5 2.8 115 chr2L 20310886 intergenic spir + chr2L 20310944 intergenic spir + chr2L 20311001 intergenic spir + chr2L_7_20310001 chr2L_20310001 RAL-787 342 chr2L 20372228 20372243 chr2L 20372469 20372484 pogo 5 241 0.5 3.0 1.8 1.8 256 chr2L 20372228 intergenic Ugt37a1 - chr2L 20372356 intergenic Ugt37a1 - chr2L 20372484 exon Ugt37a1 - chr2L_5_20370001 chr2L_20370001 RAL-787 343 chr2L 20383441 20383471 chr2L 20383533 20383563 5 91 3.0 1.5 2.2 1.6 122 chr2L 20383441 intergenic not near genes chr2L 20383502 intergenic not near genes chr2L 20383563 intergenic not near genes chr2L_5_20380001 chr2L_20380001 RAL-787 344 chr2L 20498690 20498708 chr2L 20498789 20498807 5 99 0.0 5.5 2.8 1.3 117 chr2L 20498690 intergenic not near genes chr2L 20498748 intergenic not near genes chr2L 20498807 intergenic not near genes chr2L_5_20495001 chr2L_20495001 RAL-787 345 chr2L 20518385 20518415 chr2L 20518470 20518500 12 84 2.5 3.0 2.8 3.2 115 chr2L 20518385 intergenic not near genes chr2L 20518442 intergenic not near genes chr2L 20518500 intergenic not near genes chr2L_12_20515001 chr2L_20515001 RAL-787 346 chr2L 20533971 20533987 chr2L 20534245 20534261 8 275 2.5 2.5 2.5 2.3 290 chr2L 20533971 intergenic not near genes chr2L 20534116 intergenic not near genes chr2L 20534261 intergenic not near genes chr2L_8_20530001 chr2L_20530001 RAL-787 347 chr2L 20568664 20568680 chr2L 20569051 20569070 X-element 7 390 4.5 3.5 4.0 1.4 406 chr2L 20568664 intron CR45347 + chr2L 20568867 intron CR45347 + chr2L 20569070 intron CR45347 + chr2L_7_20565001 chr2L_20565001 RAL-787 348 chr2L 20639520 20639530 chr2L 20639787 20639806 INE-1 6 274 2.0 4.0 3.0 1.5 286 chr2L 20639520 intergenic not near genes chr2L 20639663 intergenic CG31680 + chr2L 20639806 intergenic CG31680 + chr2L_6_20635001 chr2L_20635001 RAL-787 349 chr2L 20668691 20668712 chr2L 20668767 20668788 4 76 5.0 2.5 3.8 0.8 97 chr2L 20668691 intron CG31678 - chr2L 20668740 intron CG31678 - chr2L 20668788 intron CG31678 - chr2L_4_20665001 chr2L_20665001 RAL-787 350 chr2L 20835820 20835834 chr2L 20836523 20836551 Quasimodo 6 715 1.0 2.5 1.8 2.1 731 chr2L 20835820 5` UTR Oseg5 - chr2L 20836186 intergenic Oseg5 -,Spn38F - chr2L 20836551 intergenic Spn38F - chr2L_6_20835001 chr2L_20835001 RAL-787 351 chr2L 20976657 20976672 chr2L 20981472 20981486 X-element 5 4815 1.0 2.5 1.8 1.8 4829 chr2L 20976657 intron CG42238 - chr2L 20979072 intron CG42238 - chr2L 20981486 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-787 352 chr2L 20984737 20984766 chr2L 20984829 20984833 10 89 2.5 3.5 3.0 2.5 96 chr2L 20984737 intron CG42238 - chr2L 20984785 intron CG42238 - chr2L 20984833 intron CG42238 - chr2L_10_20980001 chr2L_20980001 RAL-787 353 chr2L 21020275 21020308 chr2L 21023952 21023985 NOF 12 3676 2.0 2.5 2.2 3.8 3710 chr2L 21020275 intron CG42238 - chr2L 21022130 intron CG42238 - chr2L 21023985 intron CG42238 - chr2L_12_21020001 chr2L_21020001 RAL-787 354 chr2L 21041133 21041165 chr2L 21049394 21049426 Tirant 5 8260 1.0 2.0 1.5 2.0 8293 chr2L 21041133 intron CG42238 - chr2L 21045280 intron CG42238 - chr2L 21049426 intron CG42238 - chr2L_5_21045001 chr2L_21045001 RAL-787 355 chr2L 21333132 21333164 chr2L 21333229 21333261 5 95 2.5 0.0 1.2 2.3 129 chr2L 21333132 intron dimm + chr2L 21333196 intron dimm + chr2L 21333261 intron dimm + chr2L_5_21330001 chr2L_21330001 RAL-787 356 chr2L 21355609 21355636 chr2L 21355754 21355768 6 140 1.5 1.5 1.5 2.4 159 chr2L 21355609 intron Tsp39D + chr2L 21355688 intron Tsp39D + chr2L 21355768 intron Tsp39D + chr2L_6_21355001 chr2L_21355001 RAL-787 357 chr2L 21597031 21597054 chr2L 21604775 21604798 roo 5 7744 4.0 4.0 4.0 1.0 7767 chr2L 21597031 intergenic not near genes chr2L 21600914 intergenic not near genes chr2L 21604798 intergenic not near genes chr2L_5_21600001 chr2L_21600001 RAL-787 358 chr2L 21819330 21819350 chr2L 21819418 21819438 5 88 3.5 3.5 3.5 1.1 108 chr2L 21819330 intergenic CR44786 + chr2L 21819384 intergenic CR44786 + chr2L 21819438 intergenic CR44786 + chr2L_5_21815001 chr2L_21815001 RAL-787 359 chr2L 21981685 21981715 chr2L 21990848 21990879 roo 9 9165 2.5 4.0 3.2 2.1 9194 chr2L 21981685 exon CG2528 - chr2L 21986282 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_9_21985001 chr2L_21985001 RAL-787 360 chr2L 22191868 22192042 chr2L 22191940 22192131 8 86 4.5 2.5 3.5 1.8 263 chr2L 22191868 intron Ir40a - chr2L 22192000 intron Ir40a - chr2L 22192131 intron Ir40a - chr2L_8_22190001 chr2L_22190001 RAL-787 361 chr2L 22545981 22546011 chr2L 22546077 22546107 14 95 2.0 2.0 2.0 4.7 126 chr2L 22545981 intron CG17490 + chr2L 22546044 intron CG17490 + chr2L 22546107 intron CG17490 + chr2L_14_22545001 chr2L_22545001 RAL-787 362 chr2L 22548922 22548937 chr2L 22550147 22550162 1360 8 1225 0.0 5.0 2.5 2.3 1240 chr2L 22548922 intergenic CG17490 + chr2L 22549542 intergenic not near genes chr2L 22550162 intergenic CG17493 + chr2L_8_22545001 chr2L_22545001 RAL-787 363 chr2L 22679803 22679825 chr2L 22684575 22684597 F-element 6 4772 1.5 3.5 2.5 1.7 4794 chr2L 22679803 intron CG40006 - chr2L 22682200 intron CG40006 - chr2L 22684597 intron CG40006 - chr2L_6_22680001 chr2L_22680001 RAL-787 364 chr2L 22693926 22693951 chr2L 22694010 22694038 11 84 1.5 6.0 3.8 2.3 112 chr2L 22693926 intron CG40006 - chr2L 22693982 intron CG40006 - chr2L 22694038 intron CG40006 - chr2L_11_22690001 chr2L_22690001 RAL-787 365 chr2L 22776428 22776449 chr2L 22778217 22778238 S-element 4 1789 1.5 0.5 1.0 2.0 1810 chr2L 22776428 intergenic not near genes chr2L 22777333 intergenic not near genes chr2L 22778238 intergenic not near genes chr2L_4_22775001 chr2L_22775001 RAL-787 366 chr2L 22983942 22983969 chr2L 22984018 22984045 8 76 1.0 0.0 0.5 5.3 103 chr2L 22983942 intron cta + chr2L 22983994 intron cta + chr2L 22984045 intron cta + chr2L_8_22980001 chr2L_22980001 RAL-787 367 chr2R 529324 529355 chr2R 537949 537977 Max-element 8 8623 2.5 3.0 2.8 2.1 8653 chr2R 529324 intron CG40378 + chr2R 533650 intron CG40378 + chr2R 537977 intron CG40378 + chr2R_8_530001 chr2R_530001 RAL-787 368 chr2R 552765 552788 chr2R 553969 553983 1360 5 1202 13.5 6.5 10.0 0.5 1218 chr2R 552765 intron CG40378 + chr2R 553374 intron CG40378 + chr2R 553983 intron CG40378 + chr2R_5_550001 chr2R_550001 RAL-787 369 chr2R 1082377 1082385 chr2R 1087126 1087130 Doc 5 4748 1.5 0.5 1.0 2.5 4753 chr2R 1082377 intron rl + chr2R 1084754 intron rl + chr2R 1087130 intron rl + chr2R_5_1080001 chr2R_1080001 RAL-787 370 chr2R 1340066 1340080 chr2R 1340156 1340170 5 90 8.5 10.5 9.5 0.5 104 chr2R 1340066 intergenic not near genes chr2R 1340118 intergenic not near genes chr2R 1340170 intergenic not near genes chr2R_5_1340001 chr2R_1340001 RAL-787 371 chr2R 1732854 1732869 chr2R 1733001 1733016 4 146 4.0 3.5 3.8 0.8 162 chr2R 1732854 intron CG41520 + chr2R 1732935 intron CG41520 + chr2R 1733016 intron CG41520 + chr2R_4_1730001 chr2R_1730001 RAL-787 372 chr2R 2498983 2499018 chr2R 2508130 2508165 roo 6 9145 2.5 3.5 3.0 1.5 9182 chr2R 2498983 intron MFS17 - chr2R 2503574 intron MFS17 - chr2R 2508165 intron MFS17 - chr2R_6_2500001 chr2R_2500001 RAL-787 373 chr2R 2591546 2591553 chr2R 2594222 2594228 roo 6 2675 15.0 10.0 12.5 0.4 2682 chr2R 2591546 intergenic not near genes chr2R 2592887 intergenic not near genes chr2R 2594228 intergenic not near genes chr2R_6_2590001 chr2R_2590001 RAL-787 374 chr2R 3927686 3927720 chr2R 3927783 3927817 8 96 0.5 2.5 1.5 3.2 131 chr2R 3927686 intron uex - chr2R 3927752 intron uex - chr2R 3927817 intron uex - chr2R_8_3925001 chr2R_3925001 RAL-787 375 chr2R 4015316 4015345 chr2R 4015489 4015518 7 173 1.5 3.5 2.5 2.0 202 chr2R 4015316 intron Haspin + chr2R 4015417 intron Haspin + chr2R 4015518 intron Haspin + chr2R_7_4015001 chr2R_4015001 RAL-787 376 chr2R 4312953 4312984 chr2R 4313037 4313068 8 84 2.0 3.5 2.8 2.1 115 chr2R 4312953 intergenic not near genes chr2R 4313010 intergenic not near genes chr2R 4313068 intergenic not near genes chr2R_8_4310001 chr2R_4310001 RAL-787 377 chr2R 4329553 4329570 chr2R 4329639 4329651 4 85 4.5 5.0 4.8 0.7 98 chr2R 4329553 intron Gprk1 - chr2R 4329602 intron Gprk1 - chr2R 4329651 intron Gprk1 - chr2R_4_4325001 chr2R_4325001 RAL-787 378 chr2R 4350767 4350799 chr2R 4350847 4350865 5 76 0.5 1.5 1.0 2.5 98 chr2R 4350767 exon Gprk1 - chr2R 4350816 intron Gprk1 - chr2R 4350865 intron Gprk1 - chr2R_5_4350001 chr2R_4350001 RAL-787 379 chr2R 4508165 4508194 chr2R 4508246 4508275 4 81 1.5 1.5 1.5 1.6 110 chr2R 4508165 intron CR44100 + chr2R 4508220 5` UTR CR44100 + chr2R 4508275 5` UTR CR44100 + chr2R_4_4505001 chr2R_4505001 RAL-787 380 chr2R 4621320 4621337 chr2R 4621860 4621877 8 540 5.0 3.0 4.0 1.6 557 chr2R 4621320 3` UTR CR44101 - chr2R 4621598 3` UTR CR44101 - chr2R 4621877 3` UTR CR44101 - chr2R_8_4620001 chr2R_4620001 RAL-787 381 chr2R 4622951 4622986 chr2R 4624110 4624145 1360 6 1158 2.5 5.5 4.0 1.2 1194 chr2R 4622951 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624145 intergenic not near genes chr2R_6_4620001 chr2R_4620001 RAL-787 382 chr2R 4745517 4745546 chr2R 4747121 4747150 9 1600 2.0 2.5 2.2 2.8 1633 chr2R 4745517 intron conu + chr2R 4746334 intron conu + chr2R 4747150 intron conu + chr2R_9_4745001 chr2R_4745001 RAL-787 383 chr2R 4782777 4782795 chr2R 4782878 4782896 6 100 0.0 2.5 1.2 2.7 119 chr2R 4782777 intergenic not near genes chr2R 4782836 intergenic not near genes chr2R 4782896 intergenic not near genes chr2R_6_4780001 chr2R_4780001 RAL-787 384 chr2R 4815765 4815798 chr2R 4815850 4815883 7 81 2.5 4.0 3.2 1.7 118 chr2R 4815765 3` UTR CG17528 - chr2R 4815824 3` UTR CG17528 - chr2R 4815883 3` UTR CG17528 - chr2R_7_4815001 chr2R_4815001 RAL-787 385 chr2R 4916099 4916124 chr2R 4916169 4916202 8 76 1.5 1.0 1.2 3.6 103 chr2R 4916099 intergenic not near genes chr2R 4916150 intergenic not near genes chr2R 4916202 intergenic not near genes chr2R_8_4915001 chr2R_4915001 RAL-787 386 chr2R 5038529 5038536 chr2R 5039325 5039331 5 796 4.5 1.0 2.8 1.3 802 chr2R 5038529 intergenic not near genes chr2R 5038930 intergenic not near genes chr2R 5039331 intergenic not near genes chr2R_5_5035001 chr2R_5035001 RAL-787 387 chr2R 5062774 5062801 chr2R 5062867 5062880 8 90 3.0 4.5 3.8 1.7 106 chr2R 5062774 intergenic not near genes chr2R 5062827 intergenic not near genes chr2R 5062880 intergenic not near genes chr2R_8_5060001 chr2R_5060001 RAL-787 388 chr2R 5068881 5068911 chr2R 5071008 5071038 5 2126 5.5 12.5 9.0 0.5 2157 chr2R 5068881 intron TpnC41C - chr2R 5069960 intron TpnC41C - chr2R 5071038 intergenic not near genes chr2R_5_5065001 chr2R_5065001 RAL-787 389 chr2R 5068874 5068893 chr2R 5071646 5071666 7 2773 5.5 17.0 11.2 0.6 2792 chr2R 5068874 intron TpnC41C - chr2R 5070270 intergenic TpnC41C - chr2R 5071666 intergenic not near genes chr2R_7_5070001 chr2R_5070001 RAL-787 390 chr2R 5075341 5075372 chr2R 5075757 5075787 11 415 1.5 2.5 2.0 3.7 446 chr2R 5075341 intergenic not near genes chr2R 5075564 intergenic not near genes chr2R 5075787 intergenic not near genes chr2R_11_5075001 chr2R_5075001 RAL-787 391 chr2R 5080793 5080813 chr2R 5080876 5080904 6 90 2.0 0.5 1.2 2.7 111 chr2R 5080793 intergenic not near genes chr2R 5080848 intergenic not near genes chr2R 5080904 intergenic not near genes chr2R_6_5080001 chr2R_5080001 RAL-787 392 chr2R 5209781 5209808 chr2R 5210314 5210341 5 530 3.5 1.0 2.2 1.6 560 chr2R 5209781 intron Nipped-A - chr2R 5210061 intron Nipped-A - chr2R 5210341 intron Nipped-A - chr2R_5_5210001 chr2R_5210001 RAL-787 393 chr2R 5476352 5476380 chr2R 5476896 5476924 12 543 5.0 2.0 3.5 2.7 572 chr2R 5476352 intron CG30440 - chr2R 5476638 intron CG30440 - chr2R 5476924 intron CG30440 - chr2R_12_5475001 chr2R_5475001 RAL-787 394 chr2R 5484870 5484880 chr2R 5484957 5484967 4 87 0.0 2.0 1.0 2.0 97 chr2R 5484870 intron CG30440 - chr2R 5484918 intron CG30440 - chr2R 5484967 intron CG30440 - chr2R_4_5480001 chr2R_5480001 RAL-787 395 chr2R 5581402 5581424 chr2R 5627611 5627632 4 46208 2.0 4.5 3.2 1.0 46230 chr2R 5581402 intergenic not near genes chr2R 5604517 intron Fis1 - chr2R 5627632 intergenic not near genes chr2R_4_5600001 chr2R_5600001 RAL-787 396 chr2R 5621022 5621052 chr2R 5621158 5621190 14 135 5.5 3.0 4.2 2.7 168 chr2R 5621022 intergenic not near genes chr2R 5621106 intergenic not near genes chr2R 5621190 intergenic not near genes chr2R_14_5620001 chr2R_5620001 RAL-787 397 chr2R 5621374 5621400 chr2R 5621453 5621456 4 70 1.0 4.0 2.5 1.1 82 chr2R 5621374 intergenic not near genes chr2R 5621415 intergenic not near genes chr2R 5621456 intergenic not near genes chr2R_4_5620001 chr2R_5620001 RAL-787 398 chr2R 5640025 5640044 chr2R 5640101 5640114 5 75 4.5 7.5 6.0 0.7 89 chr2R 5640025 intergenic not near genes chr2R 5640070 intergenic not near genes chr2R 5640114 intergenic not near genes chr2R_5_5640001 chr2R_5640001 RAL-787 399 chr2R 5640475 5640499 chr2R 5640556 5640590 14 90 5.0 4.5 4.8 2.4 115 chr2R 5640475 intergenic CG11665 - chr2R 5640532 intergenic CG11665 - chr2R 5640590 intergenic CG11665 - chr2R_14_5640001 chr2R_5640001 RAL-787 400 chr2R 5655415 5655450 chr2R 5655495 5655506 12 77 1.0 6.0 3.5 2.7 91 chr2R 5655415 exon CG1344 + chr2R 5655460 exon CG1344 + chr2R 5655506 exon CG1344 + chr2R_12_5655001 chr2R_5655001 RAL-787 401 chr2R 5655885 5655901 chr2R 5655964 5655980 8 85 2.0 0.5 1.2 3.6 95 chr2R 5655885 3` UTR CG1344 + chr2R 5655932 3` UTR CG1344 + chr2R 5655980 3` UTR CG1344 + chr2R_8_5655001 chr2R_5655001 RAL-787 402 chr2R 5701752 5701770 chr2R 5701832 5701850 4 80 2.5 1.0 1.8 1.4 98 chr2R 5701752 intergenic vlc + chr2R 5701801 intergenic vlc + chr2R 5701850 intergenic vlc + chr2R_4_5700001 chr2R_5700001 RAL-787 403 chr2R 5772547 5772842 chr2R 5772627 5772924 4 82 3.0 3.5 3.2 1.0 377 chr2R 5772547 3` UTR Gp210 + chr2R 5772736 3` UTR Gp210 + chr2R 5772924 3` UTR Gp210 + chr2R_4_5770001 chr2R_5770001 RAL-787 404 chr2R 5859980 5860013 chr2R 5860091 5860125 9 111 4.0 4.5 4.2 1.7 145 chr2R 5859980 3` UTR dpr12 + chr2R 5860052 3` UTR dpr12 + chr2R 5860125 3` UTR dpr12 + chr2R_9_5860001 chr2R_5860001 RAL-787 405 chr2R 5869276 5869308 chr2R 5874352 5874384 flea 15 5074 5.0 2.5 3.8 3.1 5108 chr2R 5869276 intergenic not near genes chr2R 5871830 intergenic not near genes chr2R 5874384 intergenic not near genes chr2R_15_5870001 chr2R_5870001 RAL-787 406 chr2R 5885370 5885378 chr2R 5885499 5885507 4 129 1.5 1.5 1.5 1.6 137 chr2R 5885370 5` UTR CR44125 + chr2R 5885438 5` UTR CR44125 + chr2R 5885507 5` UTR CR44125 + chr2R_4_5885001 chr2R_5885001 RAL-787 407 chr2R 5916834 5916860 chr2R 5917880 5917886 6 1042 3.0 3.5 3.2 1.4 1052 chr2R 5916834 intron CG43366 + chr2R 5917360 intron CG43366 + chr2R 5917886 intron CG43366 + chr2R_6_5915001 chr2R_5915001 RAL-787 408 chr2R 6065754 6065765 chr2R 6065865 6065871 4 110 2.5 2.5 2.5 1.1 117 chr2R 6065754 intron CCHa2-R + chr2R 6065812 intron CCHa2-R + chr2R 6065871 intron CCHa2-R + chr2R_4_6065001 chr2R_6065001 RAL-787 409 chr2R 6065768 6065782 chr2R 6065860 6065886 7 96 1.5 2.0 1.8 2.5 118 chr2R 6065768 intron CCHa2-R + chr2R 6065827 intron CCHa2-R + chr2R 6065886 exon CCHa2-R + chr2R_7_6065001 chr2R_6065001 RAL-787 410 chr2R 6091637 6091661 chr2R 6091713 6091736 4 76 0.0 0.0 0.0 4.0 99 chr2R 6091637 3` UTR EcR - chr2R 6091686 3` UTR EcR - chr2R 6091736 3` UTR EcR - chr2R_4_6090001 chr2R_6090001 RAL-787 411 chr2R 6096711 6096750 chr2R 6101909 6101915 BS 9 5184 5.5 4.0 4.8 1.6 5204 chr2R 6096711 intron EcR - chr2R 6099313 intron EcR - chr2R 6101915 intron EcR - chr2R_9_6095001 chr2R_6095001 RAL-787 412 chr2R 6119614 6119642 chr2R 6119699 6119727 9 85 0.0 1.5 0.8 5.0 113 chr2R 6119614 intron EcR - chr2R 6119670 intron EcR - chr2R 6119727 intron EcR - chr2R_9_6115001 chr2R_6115001 RAL-787 413 chr2R 6178678 6178705 chr2R 6178765 6178791 6 87 2.5 1.0 1.8 2.1 113 chr2R 6178678 intergenic not near genes chr2R 6178734 intergenic not near genes chr2R 6178791 intergenic not near genes chr2R_6_6175001 chr2R_6175001 RAL-787 414 chr2R 6494527 6494543 chr2R 6499288 6499305 F-element 4 4762 1.5 0.0 0.8 2.2 4778 chr2R 6494527 intergenic not near genes chr2R 6496916 intergenic not near genes chr2R 6499305 intergenic not near genes chr2R_4_6495001 chr2R_6495001 RAL-787 415 chr2R 6533380 6533403 chr2R 6533537 6533560 12 155 4.0 2.5 3.2 2.9 180 chr2R 6533380 intron,3` UTR jing +,CR43905 - chr2R 6533470 intron,3` UTR jing +,CR43905 - chr2R 6533560 intron,3` UTR jing +,CR43905 - chr2R_12_6530001 chr2R_6530001 RAL-787 416 chr2R 6539823 6539856 chr2R 6539945 6539971 4 118 1.5 0.0 0.8 2.2 148 chr2R 6539823 intron jing + chr2R 6539897 intron jing + chr2R 6539971 intron jing + chr2R_4_6535001 chr2R_6535001 RAL-787 417 chr2R 6546722 6546752 chr2R 6546823 6546851 6 100 1.5 3.5 2.5 1.7 129 chr2R 6546722 intron jing + chr2R 6546786 intron jing + chr2R 6546851 intron jing + chr2R_6_6545001 chr2R_6545001 RAL-787 418 chr2R 6579772 6579792 chr2R 6584858 6584878 flea 8 5085 2.5 0.5 1.5 3.2 5106 chr2R 6579772 intron jing + chr2R 6582325 intron jing + chr2R 6584878 intron jing + chr2R_8_6580001 chr2R_6580001 RAL-787 419 chr2R 6593328 6593341 chr2R 6593421 6593438 5 95 6.0 3.5 4.8 0.9 110 chr2R 6593328 intron jing + chr2R 6593383 intron jing + chr2R 6593438 intron jing + chr2R_5_6590001 chr2R_6590001 RAL-787 420 chr2R 6624436 6624464 chr2R 6624520 6624548 8 82 3.0 6.5 4.8 1.4 112 chr2R 6624436 exon CG33919 - chr2R 6624492 intron CG33919 - chr2R 6624548 exon CG33919 - chr2R_8_6620001 chr2R_6620001 RAL-787 421 chr2R 6633210 6633232 chr2R 6633276 6633309 8 73 2.0 2.0 2.0 2.7 99 chr2R 6633210 intergenic Vha16-1 -,Trap1 - chr2R 6633260 intergenic Vha16-1 -,Trap1 - chr2R 6633309 intergenic Vha16-1 -,Trap1 - chr2R_8_6630001 chr2R_6630001 RAL-787 422 chr2R 6825361 6825381 chr2R 6825447 6825467 9 86 5.0 5.5 5.2 1.5 106 chr2R 6825361 intergenic not near genes chr2R 6825414 intergenic not near genes chr2R 6825467 intergenic not near genes chr2R_9_6825001 chr2R_6825001 RAL-787 423 chr2R 6898310 6898336 chr2R 6898653 6898677 8 341 2.5 2.5 2.5 2.3 367 chr2R 6898310 intron CG30158 + chr2R 6898494 intron CG30158 + chr2R 6898677 intron CG30158 + chr2R_8_6895001 chr2R_6895001 RAL-787 424 chr2R 6952164 6952178 chr2R 6959744 6959758 opus 7 7580 1.0 1.0 1.0 3.5 7594 chr2R 6952164 intron,intron mim -,CheB42c - chr2R 6955961 intron,intron mim -,CheB42c - chr2R 6959758 intron,intron mim -,CheB42c - chr2R_7_6955001 chr2R_6955001 RAL-787 425 chr2R 7025902 7025915 chr2R 7025991 7026004 4 89 8.5 6.0 7.2 0.5 102 chr2R 7025902 intron Tsp42Ef + chr2R 7025953 intron Tsp42Ef + chr2R 7026004 intron Tsp42Ef + chr2R_4_7025001 chr2R_7025001 RAL-787 426 chr2R 7103380 7103409 chr2R 7103454 7103484 5 69 6.5 3.5 5.0 0.8 104 chr2R 7103380 intron esn + chr2R 7103432 intron esn + chr2R 7103484 intron esn + chr2R_5_7100001 chr2R_7100001 RAL-787 427 chr2R 7104160 7104194 chr2R 7104362 7104396 11 201 1.5 1.0 1.2 5.0 236 chr2R 7104160 intron esn + chr2R 7104278 intron esn + chr2R 7104396 intron esn + chr2R_11_7100001 chr2R_7100001 RAL-787 428 chr2R 7139944 7139954 chr2R 7141418 7141446 hopper2 7 1487 2.5 4.5 3.5 1.6 1502 chr2R 7139944 intergenic not near genes chr2R 7140695 intergenic not near genes chr2R 7141446 intergenic not near genes chr2R_7_7140001 chr2R_7140001 RAL-787 429 chr2R 7161176 7161203 chr2R 7161320 7161345 13 145 3.5 2.5 3.0 3.2 169 chr2R 7161176 intron pk + chr2R 7161260 intron pk + chr2R 7161345 intron pk + chr2R_13_7160001 chr2R_7160001 RAL-787 430 chr2R 7196565 7196593 chr2R 7201340 7201368 F-element 4 4775 2.0 0.0 1.0 2.0 4803 chr2R 7196565 intron pk + chr2R 7198966 intron pk + chr2R 7201368 intron pk + chr2R_4_7195001 chr2R_7195001 RAL-787 431 chr2R 7209846 7209871 chr2R 7217593 7217619 roo 8 7744 2.0 6.5 4.2 1.5 7773 chr2R 7209846 intron pk + chr2R 7213732 intron pk + chr2R 7217619 intron pk + chr2R_8_7210001 chr2R_7210001 RAL-787 432 chr2R 7235820 7235844 chr2R 7240912 7240922 jockey 8 5089 4.5 3.0 3.8 1.7 5102 chr2R 7235820 intergenic not near genes chr2R 7238371 intergenic not near genes chr2R 7240922 intergenic not near genes chr2R_8_7235001 chr2R_7235001 RAL-787 433 chr2R 7354554 7354573 chr2R 7355844 7355854 5 1283 2.5 8.0 5.2 0.8 1300 chr2R 7354554 intron Dscam1 - chr2R 7355204 intron Dscam1 - chr2R 7355854 intron Dscam1 - chr2R_5_7355001 chr2R_7355001 RAL-787 434 chr2R 7459283 7459300 chr2R 7459371 7459387 4 88 3.0 0.5 1.8 1.4 104 chr2R 7459283 intergenic CG11141 -,Inos - chr2R 7459335 intergenic CG11141 -,Inos - chr2R 7459387 intergenic CG11141 - chr2R_4_7455001 chr2R_7455001 RAL-787 435 chr2R 7563221 7563247 chr2R 7563312 7563338 18 90 5.0 4.0 4.5 3.3 117 chr2R 7563221 3` UTR Corin + chr2R 7563280 3` UTR Corin + chr2R 7563338 3` UTR Corin + chr2R_18_7560001 chr2R_7560001 RAL-787 436 chr2R 7608415 7608430 chr2R 7613618 7613633 I-element 4 5202 3.0 0.0 1.5 1.6 5218 chr2R 7608415 intron CG1358 - chr2R 7611024 intron CG1358 - chr2R 7613633 intron CG1358 - chr2R_4_7610001 chr2R_7610001 RAL-787 437 chr2R 7692016 7692038 chr2R 7692096 7692119 6 80 2.0 3.0 2.5 1.7 103 chr2R 7692016 intron CG1399 - chr2R 7692068 intron CG1399 - chr2R 7692119 intron CG1399 - chr2R_6_7690001 chr2R_7690001 RAL-787 438 chr2R 7851260 7851286 chr2R 7851346 7851371 8 86 4.0 7.0 5.5 1.2 111 chr2R 7851260 intron Dgk - chr2R 7851316 intron Dgk - chr2R 7851371 intron Dgk - chr2R_8_7850001 chr2R_7850001 RAL-787 439 chr2R 7869190 7869209 chr2R 7873976 7873995 Doc 6 4786 3.5 1.0 2.2 1.9 4805 chr2R 7869190 intron Dgk - chr2R 7871592 intron Dgk - chr2R 7873995 intron Dgk - chr2R_6_7870001 chr2R_7870001 RAL-787 440 chr2R 7897150 7897155 chr2R 7897211 7897244 5 81 0.0 3.0 1.5 2.0 94 chr2R 7897150 intron CG30377 + chr2R 7897197 intron CG30377 + chr2R 7897244 intron CG30377 + chr2R_5_7895001 chr2R_7895001 RAL-787 441 chr2R 8015667 8015682 chr2R 8017677 8017703 5 2018 0.5 2.5 1.5 2.0 2036 chr2R 8015667 intergenic mir-4981 + chr2R 8016685 intergenic not near genes chr2R 8017703 intergenic not near genes chr2R_5_8015001 chr2R_8015001 RAL-787 442 chr2R 8089257 8089287 chr2R 8089343 8089373 12 85 1.0 3.0 2.0 4.0 116 chr2R 8089257 3` UTR sut2 + chr2R 8089315 intergenic sut2 +,sut3 + chr2R 8089373 intergenic sut2 +,sut3 + chr2R_12_8085001 chr2R_8085001 RAL-787 443 chr2R 8105941 8105966 chr2R 8106032 8106055 8 90 3.0 3.5 3.2 1.9 114 chr2R 8105941 intron Cul4 - chr2R 8105998 intron Cul4 - chr2R 8106055 5` UTR Cul4 - chr2R_8_8105001 chr2R_8105001 RAL-787 444 chr2R 8203759 8203776 chr2R 8203851 8203868 6 92 1.5 0.5 1.0 3.0 109 chr2R 8203759 intron LRP1 + chr2R 8203814 intron LRP1 + chr2R 8203868 intron LRP1 + chr2R_6_8200001 chr2R_8200001 RAL-787 445 chr2R 8236036 8236046 chr2R 8236117 8236127 4 81 3.5 1.5 2.5 1.1 91 chr2R 8236036 intergenic not near genes chr2R 8236082 intergenic not near genes chr2R 8236127 intergenic not near genes chr2R_4_8235001 chr2R_8235001 RAL-787 446 chr2R 8249568 8249586 chr2R 8249650 8249668 5 82 3.0 1.5 2.2 1.6 100 chr2R 8249568 5` UTR CG44439 - chr2R 8249618 intergenic CG44439 - chr2R 8249668 intergenic CG44439 - chr2R_5_8245001 chr2R_8245001 RAL-787 447 chr2R 8330867 8330885 chr2R 8331353 8331361 roo 7 484 4.0 2.0 3.0 1.8 494 chr2R 8330867 intron pdm3 + chr2R 8331114 intron pdm3 + chr2R 8331361 intron pdm3 + chr2R_7_8330001 chr2R_8330001 RAL-787 448 chr2R 8512769 8512796 chr2R 8512848 8512875 13 75 3.0 6.0 4.5 2.4 106 chr2R 8512769 intron mtt - chr2R 8512822 intron mtt - chr2R 8512875 intron mtt - chr2R_13_8510001 chr2R_8510001 RAL-787 449 chr2R 8566031 8566066 chr2R 8566983 8567012 1360 7 949 2.0 0.0 1.0 3.5 981 chr2R 8566031 5` UTR Cyp6a14 - chr2R 8566522 5` UTR Cyp6a14 - chr2R 8567012 5` UTR Cyp6a14 - chr2R_7_8565001 chr2R_8565001 RAL-787 450 chr2R 8595962 8595992 chr2R 8596040 8596070 11 75 1.5 2.5 2.0 3.7 108 chr2R 8595962 intergenic not near genes chr2R 8596016 intergenic not near genes chr2R 8596070 intergenic not near genes chr2R_11_8595001 chr2R_8595001 RAL-787 451 chr2R 8722765 8722794 chr2R 8723006 8723022 pogo 6 234 4.0 3.0 3.5 1.3 257 chr2R 8722765 intron CG14767 - chr2R 8722894 intron CG14767 - chr2R 8723022 intron CG14767 - chr2R_6_8720001 chr2R_8720001 RAL-787 452 chr2R 8777931 8777943 chr2R 8784133 8784146 diver 8 6203 0.0 3.0 1.5 3.2 6215 chr2R 8777931 intergenic not near genes chr2R 8781038 intergenic not near genes chr2R 8784146 intergenic not near genes chr2R_8_8780001 chr2R_8780001 RAL-787 453 chr2R 8941568 8941597 chr2R 8941661 8941690 6 89 0.0 4.0 2.0 2.0 122 chr2R 8941568 intergenic CR44273 +,CG13748 + chr2R 8941629 5` UTR CR44273 + chr2R 8941690 5` UTR CR44273 + chr2R_6_8940001 chr2R_8940001 RAL-787 454 chr2R 9198556 9198830 chr2R 9198636 9198935 13 99 1.5 0.0 0.8 7.2 379 chr2R 9198556 intron unpg + chr2R 9198746 intron unpg + chr2R 9198935 intron unpg + chr2R_13_9195001 chr2R_9195001 RAL-787 455 chr2R 9212697 9212717 chr2R 9213181 9213196 roo 12 485 6.5 1.5 4.0 2.4 499 chr2R 9212697 intergenic CR45309 + chr2R 9212946 intergenic CR45309 + chr2R 9213196 5` UTR CR45309 + chr2R_12_9210001 chr2R_9210001 RAL-787 456 chr2R 9230224 9230241 chr2R 9230304 9230317 8 79 3.5 2.0 2.8 2.1 93 chr2R 9230224 intron hig - chr2R 9230270 intron hig - chr2R 9230317 exon hig - chr2R_8_9230001 chr2R_9230001 RAL-787 457 chr2R 9378112 9378143 chr2R 9378194 9378225 9 80 4.5 6.5 5.5 1.4 113 chr2R 9378112 intron CG13954 - chr2R 9378168 intron CG13954 - chr2R 9378225 intron CG13954 - chr2R_9_9375001 chr2R_9375001 RAL-787 458 chr2R 9408228 9408254 chr2R 9408311 9408336 7 83 3.5 1.5 2.5 2.0 108 chr2R 9408228 intron wun - chr2R 9408282 intron wun - chr2R 9408336 intron wun - chr2R_7_9405001 chr2R_9405001 RAL-787 459 chr2R 9480093 9480110 chr2R 9490622 9490641 roo 4 10530 0.0 2.5 1.2 1.8 10548 chr2R 9480093 intergenic not near genes chr2R 9485367 intergenic not near genes chr2R 9490641 intergenic not near genes chr2R_4_9485001 chr2R_9485001 RAL-787 460 chr2R 9510665 9510697 chr2R 9510781 9510813 9 116 0.0 3.5 1.8 3.2 148 chr2R 9510665 intron brp + chr2R 9510739 intron brp + chr2R 9510813 intron brp + chr2R_9_9510001 chr2R_9510001 RAL-787 461 chr2R 9605840 9605857 chr2R 9605947 9605964 5 106 2.0 4.5 3.2 1.2 124 chr2R 9605840 3` UTR CR44285 - chr2R 9605902 intergenic CR44285 -,GstT1 +,CG1902 + chr2R 9605964 intergenic GstT1 +,CR44285 -,CG1902 + chr2R_5_9605001 chr2R_9605001 RAL-787 462 chr2R 9656372 9656404 chr2R 9656460 9656492 6 87 5.5 1.5 3.5 1.3 120 chr2R 9656372 intron Mmp2 - chr2R 9656432 intron Mmp2 - chr2R 9656492 intron Mmp2 - chr2R_6_9655001 chr2R_9655001 RAL-787 463 chr2R 9726621 9726646 chr2R 9734172 9734196 17.6 6 7551 1.0 2.0 1.5 2.4 7575 chr2R 9726621 intron sqa - chr2R 9730408 intron sqa - chr2R 9734196 intron sqa - chr2R_6_9730001 chr2R_9730001 RAL-787 464 chr2R 9945442 9945467 chr2R 9945626 9945663 BS 6 192 5.5 2.0 3.8 1.2 221 chr2R 9945442 intron Mef2 - chr2R 9945552 intron Mef2 - chr2R 9945663 intron Mef2 - chr2R_6_9945001 chr2R_9945001 RAL-787 465 chr2R 10005563 10005585 chr2R 10005660 10005682 6 97 2.5 2.0 2.2 1.9 119 chr2R 10005563 intron Pka-R2 - chr2R 10005622 intron Pka-R2 - chr2R 10005682 intron Pka-R2 - chr2R_6_10005001 chr2R_10005001 RAL-787 466 chr2R 10005851 10005881 chr2R 10007015 10007044 1360 8 1162 5.0 3.5 4.2 1.5 1193 chr2R 10005851 intron Pka-R2 - chr2R 10006448 intron Pka-R2 - chr2R 10007044 intron Pka-R2 - chr2R_8_10005001 chr2R_10005001 RAL-787 467 chr2R 10053525 10053549 chr2R 10053626 10053640 4 100 0.5 1.0 0.8 2.2 115 chr2R 10053525 intron magu + chr2R 10053582 intron magu + chr2R 10053640 intron magu + chr2R_4_10050001 chr2R_10050001 RAL-787 468 chr2R 10313326 10313346 chr2R 10313411 10313434 4 87 0.0 3.0 1.5 1.6 108 chr2R 10313326 intergenic not near genes chr2R 10313380 intergenic not near genes chr2R 10313434 intergenic Ndg + chr2R_4_10310001 chr2R_10310001 RAL-787 469 chr2R 10352672 10352705 chr2R 10352749 10352779 5 76 1.5 2.5 2.0 1.7 107 chr2R 10352672 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352726 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352779 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_5_10350001 chr2R_10350001 RAL-787 470 chr2R 10387980 10387998 chr2R 10388076 10388095 7 97 0.0 1.5 0.8 3.9 115 chr2R 10387980 intron CG42732 - chr2R 10388038 intron CG42732 - chr2R 10388095 intron CG42732 - chr2R_7_10385001 chr2R_10385001 RAL-787 471 chr2R 10469024 10469054 chr2R 10469148 10469180 18 125 3.0 3.5 3.2 4.3 156 chr2R 10469024 intron CG11777 + chr2R 10469102 intron CG11777 + chr2R 10469180 intron CG11777 + chr2R_18_10465001 chr2R_10465001 RAL-787 472 chr2R 10550640 10550667 chr2R 10550718 10550743 4 78 2.0 1.5 1.8 1.4 103 chr2R 10550640 intergenic not near genes chr2R 10550692 intergenic not near genes chr2R 10550743 intergenic not near genes chr2R_4_10550001 chr2R_10550001 RAL-787 473 chr2R 10562187 10562216 chr2R 10562275 10562302 6 88 2.5 0.5 1.5 2.4 115 chr2R 10562187 exon psq + chr2R 10562244 intron psq + chr2R 10562302 intron psq + chr2R_6_10560001 chr2R_10560001 RAL-787 474 chr2R 10585576 10585589 chr2R 10594151 10594171 Tirant 4 8578 2.0 5.5 3.8 0.8 8595 chr2R 10585576 intron psq + chr2R 10589874 intron psq + chr2R 10594171 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-787 475 chr2R 10621249 10621264 chr2R 10621356 10621360 5 109 3.5 3.5 3.5 1.1 111 chr2R 10621249 intron CG11883 + chr2R 10621304 intron CG11883 + chr2R 10621360 intron CG11883 + chr2R_5_10620001 chr2R_10620001 RAL-787 476 chr2R 10644064 10644089 chr2R 10644136 10644167 6 77 1.0 0.5 0.8 3.3 103 chr2R 10644064 intron Git - chr2R 10644116 intron Git - chr2R 10644167 intron Git - chr2R_6_10640001 chr2R_10640001 RAL-787 477 chr2R 10748727 10748761 chr2R 10748807 10748813 10 73 5.5 2.0 3.8 2.1 86 chr2R 10748727 intron CG33144 - chr2R 10748770 intron CG33144 - chr2R 10748813 intron CG33144 - chr2R_10_10745001 chr2R_10745001 RAL-787 478 chr2R 10790140 10790177 chr2R 10790228 10790265 11 86 2.5 2.5 2.5 3.1 125 chr2R 10790140 intron CG33144 - chr2R 10790202 intron CG33144 - chr2R 10790265 intron CG33144 - chr2R_11_10790001 chr2R_10790001 RAL-787 479 chr2R 10796007 10796037 chr2R 10796089 10796118 6 81 5.5 0.5 3.0 1.5 111 chr2R 10796007 intron CG33144 - chr2R 10796062 intron CG33144 - chr2R 10796118 intron CG33144 - chr2R_6_10795001 chr2R_10795001 RAL-787 480 chr2R 10827346 10827356 chr2R 10827426 10827444 6 83 2.5 3.0 2.8 1.6 98 chr2R 10827346 exon CG12325 + chr2R 10827395 3` UTR CG12325 + chr2R 10827444 3` UTR,3` UTR CG12325 +,CG12344 - chr2R_6_10825001 chr2R_10825001 RAL-787 481 chr2R 10892623 10892653 chr2R 10892703 10892732 15 79 3.5 1.5 2.5 4.3 109 chr2R 10892623 3` UTR CG30020 + chr2R 10892678 3` UTR CG30020 + chr2R 10892732 3` UTR CG30020 + chr2R_15_10890001 chr2R_10890001 RAL-787 482 chr2R 10947092 10947101 chr2R 10947179 10947188 5 87 5.5 0.0 2.8 1.3 96 chr2R 10947092 5` UTR CR45228 + chr2R 10947140 intergenic CR45228 + chr2R 10947188 intergenic CR45228 + chr2R_5_10945001 chr2R_10945001 RAL-787 483 chr2R 10948028 10948061 chr2R 10955578 10955607 17.6 10 7547 0.5 4.5 2.5 2.9 7579 chr2R 10948028 intergenic not near genes chr2R 10951818 intergenic not near genes chr2R 10955607 intergenic not near genes chr2R_10_10950001 chr2R_10950001 RAL-787 484 chr2R 11009814 11009846 chr2R 11018988 11019020 roo 13 9173 3.5 4.5 4.0 2.6 9206 chr2R 11009814 intron luna - chr2R 11014417 intron luna - chr2R 11019020 intron luna - chr2R_13_11010001 chr2R_11010001 RAL-787 485 chr2R 11019883 11019910 chr2R 11024943 11024975 jockey 5 5065 0.5 1.0 0.8 2.8 5092 chr2R 11019883 intron luna - chr2R 11022429 intron luna - chr2R 11024975 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-787 486 chr2R 11071560 11071591 chr2R 11071665 11071696 10 105 4.0 1.5 2.8 2.6 136 chr2R 11071560 intron luna - chr2R 11071628 intron luna - chr2R 11071696 intron luna - chr2R_10_11070001 chr2R_11070001 RAL-787 487 chr2R 11111157 11111179 chr2R 11111292 11111315 13 137 2.0 3.0 2.5 3.7 158 chr2R 11111157 intron luna - chr2R 11111236 intron luna - chr2R 11111315 intron luna - chr2R_13_11110001 chr2R_11110001 RAL-787 488 chr2R 11207812 11207848 chr2R 11208005 11208010 BS 7 188 3.5 1.5 2.5 2.0 198 chr2R 11207812 intron shn + chr2R 11207911 intron shn + chr2R 11208010 intron shn + chr2R_7_11205001 chr2R_11205001 RAL-787 489 chr2R 11265724 11265746 chr2R 11265806 11265814 6 79 4.0 0.0 2.0 2.0 90 chr2R 11265724 exon Cpr47Ee + chr2R 11265769 intron Cpr47Ee + chr2R 11265814 intron Cpr47Ee + chr2R_6_11265001 chr2R_11265001 RAL-787 490 chr2R 11391240 11391271 chr2R 11391316 11391347 7 76 4.0 1.5 2.8 1.8 107 chr2R 11391240 intron sprt - chr2R 11391294 intron sprt - chr2R 11391347 intron sprt - chr2R_7_11390001 chr2R_11390001 RAL-787 491 chr2R 11415529 11415551 chr2R 11418676 11418700 opus 6 3147 3.0 7.5 5.2 1.0 3171 chr2R 11415529 intron Drip - chr2R 11417114 intron Drip - chr2R 11418700 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-787 492 chr2R 11472649 11472680 chr2R 11473846 11473877 pogo 8 1197 3.5 6.0 4.8 1.4 1228 chr2R 11472649 intergenic not near genes chr2R 11473263 intergenic not near genes chr2R 11473877 intergenic not near genes chr2R_8_11470001 chr2R_11470001 RAL-787 493 chr2R 11822987 11823004 chr2R 11823054 11823081 6 74 0.5 1.0 0.8 3.3 94 chr2R 11822987 intergenic not near genes chr2R 11823034 intergenic not near genes chr2R 11823081 intergenic not near genes chr2R_6_11820001 chr2R_11820001 RAL-787 494 chr2R 11932563 11932589 chr2R 11932680 11932705 5 116 3.0 3.5 3.2 1.2 142 chr2R 11932563 intergenic not near genes chr2R 11932634 intergenic not near genes chr2R 11932705 intergenic not near genes chr2R_5_11930001 chr2R_11930001 RAL-787 495 chr2R 8518777 8518791 chr2R 12066171 12066204 6 3547401 10.5 6.5 8.5 0.6 3547427 chr2R 8518777 intron mtt - chr2R 10292490 intron CAP + chr2R 12066204 intron CG8888 - chr2R_6_10290001 chr2R_10290001 RAL-787 496 chr2R 12104681 12104695 chr2R 12104760 12104767 6 78 6.5 5.5 6.0 0.9 86 chr2R 12104681 intron jeb - chr2R 12104724 intron jeb - chr2R 12104767 intron jeb - chr2R_6_12100001 chr2R_12100001 RAL-787 497 chr2R 12186018 12186036 chr2R 12186113 12186131 7 95 0.5 3.0 1.8 2.5 113 chr2R 12186018 intron Cyp6g1 + chr2R 12186074 intron Cyp6g1 + chr2R 12186131 intron Cyp6g1 + chr2R_7_12185001 chr2R_12185001 RAL-787 498 chr2R 12187472 12187506 chr2R 12190088 12190124 15 2621 80.5 44.0 62.2 0.2 2652 chr2R 12187472 exon Cyp6g1 + chr2R 12188798 exon Cyp6g2 - chr2R 12190124 exon Cyp6g2 - chr2R_15_12185001 chr2R_12185001 RAL-787 499 chr2R 12217575 12217603 chr2R 12217656 12217684 8 81 2.5 3.5 3.0 2.0 109 chr2R 12217575 intergenic not near genes chr2R 12217630 intergenic not near genes chr2R 12217684 intergenic not near genes chr2R_8_12215001 chr2R_12215001 RAL-787 500 chr2R 12362899 12362907 chr2R 12362988 12362996 4 89 5.0 2.0 3.5 0.9 97 chr2R 12362899 3` UTR CG30043 + chr2R 12362948 3` UTR CG30043 + chr2R 12362996 3` UTR CG30043 + chr2R_4_12360001 chr2R_12360001 RAL-787 501 chr2R 12501705 12501726 chr2R 12503859 12503887 Rt1c 5 2160 3.5 4.5 4.0 1.0 2182 chr2R 12501705 intron fdl - chr2R 12502796 intron fdl - chr2R 12503887 intron fdl - chr2R_5_12500001 chr2R_12500001 RAL-787 502 chr2R 12535840 12535873 chr2R 12535920 12535954 6 78 7.5 3.0 5.2 1.0 114 chr2R 12535840 intron fra + chr2R 12535897 intron fra + chr2R 12535954 intron fra + chr2R_6_12535001 chr2R_12535001 RAL-787 503 chr2R 12707523 12707542 chr2R 12715889 12715908 roo 5 8366 1.5 2.5 2.0 1.7 8385 chr2R 12707523 intron CG42663 + chr2R 12711716 intron CG42663 + chr2R 12715908 intron CG42663 + chr2R_5_12710001 chr2R_12710001 RAL-787 504 chr2R 12771322 12771357 chr2R 12771431 12771466 4 109 0.5 2.0 1.2 1.8 144 chr2R 12771322 intergenic not near genes chr2R 12771394 intergenic not near genes chr2R 12771466 intergenic not near genes chr2R_4_12770001 chr2R_12770001 RAL-787 505 chr2R 12789300 12789322 chr2R 12797663 12797669 roo 6 8359 1.0 3.5 2.2 1.9 8369 chr2R 12789300 intron,3` UTR sca +,CR45137 - chr2R 12793484 intron,intron sca +,CR45137 - chr2R 12797669 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-787 506 chr2R 12819462 12819472 chr2R 12824531 12824539 jockey 6 5068 2.0 8.0 5.0 1.0 5077 chr2R 12819462 intergenic not near genes chr2R 12822000 intergenic not near genes chr2R 12824539 intergenic not near genes chr2R_6_12820001 chr2R_12820001 RAL-787 507 chr2R 12897413 12897437 chr2R 12897518 12897542 7 105 0.5 4.5 2.5 2.0 129 chr2R 12897413 intron vg + chr2R 12897478 intron vg + chr2R 12897542 intron vg + chr2R_7_12895001 chr2R_12895001 RAL-787 508 chr2R 12988404 12988427 chr2R 12988508 12988508 6 100 0.0 0.0 0.0 6.0 104 chr2R 12988404 intergenic not near genes chr2R 12988456 intergenic not near genes chr2R 12988508 intergenic not near genes chr2R_6_12985001 chr2R_12985001 RAL-787 509 chr2R 13081566 13081591 chr2R 13081723 13081748 11 155 4.5 5.0 4.8 1.9 182 chr2R 13081566 intergenic not near genes chr2R 13081657 intergenic not near genes chr2R 13081748 intergenic not near genes chr2R_11_13080001 chr2R_13080001 RAL-787 510 chr2R 13123158 13123188 chr2R 13123502 13123533 7 344 4.5 3.5 4.0 1.4 375 chr2R 13123158 5` UTR CG13325 + chr2R 13123346 exon CG13325 + chr2R 13123533 exon CG13325 + chr2R_7_13120001 chr2R_13120001 RAL-787 511 chr2R 13136854 13136868 chr2R 13141634 13141666 Doc 8 4796 3.5 5.5 4.5 1.5 4812 chr2R 13136854 exon Cap-G + chr2R 13139260 intron Cap-G + chr2R 13141666 intron Cap-G + chr2R_8_13135001 chr2R_13135001 RAL-787 512 chr2R 13167426 13167453 chr2R 13167520 13167547 4 94 2.0 0.0 1.0 2.0 121 chr2R 13167426 intron GLaz - chr2R 13167486 intron GLaz - chr2R 13167547 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-787 513 chr2R 13240916 13240937 chr2R 13240994 13241015 6 77 1.5 2.0 1.8 2.1 99 chr2R 13240916 3` UTR GstE14 + chr2R 13240966 3` UTR GstE14 + chr2R 13241015 intergenic GstE14 + chr2R_6_13240001 chr2R_13240001 RAL-787 514 chr2R 13258566 13258574 chr2R 13259801 13259819 4 1242 3.0 0.5 1.8 1.4 1253 chr2R 13258566 intergenic CG10799 + chr2R 13259192 intergenic not near genes chr2R 13259819 intergenic CG42319 + chr2R_4_13255001 chr2R_13255001 RAL-787 515 chr2R 13309661 13309677 chr2R 13309779 13309795 5 117 2.0 0.0 1.0 2.5 134 chr2R 13309661 intergenic not near genes chr2R 13309728 intergenic not near genes chr2R 13309795 intergenic not near genes chr2R_5_13305001 chr2R_13305001 RAL-787 516 chr2R 13431488 13431520 chr2R 13431567 13431599 6 79 4.0 0.0 2.0 2.0 111 chr2R 13431488 intron CG42321 - chr2R 13431544 intron CG42321 - chr2R 13431599 intron CG42321 - chr2R_6_13430001 chr2R_13430001 RAL-787 517 chr2R 13439108 13439228 chr2R 13439223 13439302 9 120 0.0 0.0 0.0 9.0 194 chr2R 13439108 intergenic CG42321 -,cnn - chr2R 13439205 intergenic cnn -,CG42321 - chr2R 13439302 intergenic cnn -,CG42321 - chr2R_9_13435001 chr2R_13435001 RAL-787 518 chr2R 13566259 13566285 chr2R 13566338 13566365 9 79 2.0 0.0 1.0 4.5 106 chr2R 13566259 intergenic not near genes chr2R 13566312 intergenic not near genes chr2R 13566365 intergenic not near genes chr2R_9_13565001 chr2R_13565001 RAL-787 519 chr2R 13577434 13577452 chr2R 13577508 13577529 7 73 5.0 1.0 3.0 1.8 95 chr2R 13577434 5` UTR CR44365 + chr2R 13577482 5` UTR CR44365 + chr2R 13577529 5` UTR CR44365 + chr2R_7_13575001 chr2R_13575001 RAL-787 520 chr2R 13580510 13580531 chr2R 13580860 13580881 jockey 7 349 0.0 7.0 3.5 1.6 371 chr2R 13580510 3` UTR CG6191 - chr2R 13580696 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580881 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_7_13580001 chr2R_13580001 RAL-787 521 chr2R 13692316 13692352 chr2R 13692398 13692436 6 83 2.0 1.5 1.8 2.1 120 chr2R 13692316 intron,intron fas +,CG6220 - chr2R 13692376 intron,intron fas +,CG6220 - chr2R 13692436 intron,intron fas +,CG6220 - chr2R_6_13690001 chr2R_13690001 RAL-787 522 chr2R 13738920 13738936 chr2R 13739011 13739027 4 91 0.0 3.5 1.8 1.4 107 chr2R 13738920 intron fas + chr2R 13738974 intron fas + chr2R 13739027 intron fas + chr2R_4_13735001 chr2R_13735001 RAL-787 523 chr2R 13768979 13769008 chr2R 13769077 13769107 10 97 1.5 4.5 3.0 2.5 128 chr2R 13768979 intergenic not near genes chr2R 13769043 intergenic not near genes chr2R 13769107 intergenic not near genes chr2R_10_13765001 chr2R_13765001 RAL-787 524 chr2R 13854950 13854969 chr2R 13855235 13855250 7 284 5.5 2.5 4.0 1.4 300 chr2R 13854950 intron,intron CG6553 -,CR44367 + chr2R 13855100 exon,5` UTR CG6553 -,CR44367 + chr2R 13855250 exon,5` UTR CG6553 -,CR44367 + chr2R_7_13855001 chr2R_13855001 RAL-787 525 chr2R 13905604 13905627 chr2R 13907586 13907608 Rt1a 4 1981 6.0 2.5 4.2 0.8 2004 chr2R 13905604 intron shot - chr2R 13906606 intron shot - chr2R 13907608 intron shot - chr2R_4_13905001 chr2R_13905001 RAL-787 526 chr2R 14093434 14093447 chr2R 14109585 14109597 4 16151 6.0 0.5 3.2 1.0 16163 chr2R 14093434 intron Prosap - chr2R 14101516 intron Prosap - chr2R 14109597 intron Prosap - chr2R_4_14100001 chr2R_14100001 RAL-787 527 chr2R 14142447 14142467 chr2R 14142536 14142557 5 90 4.5 2.5 3.5 1.1 110 chr2R 14142447 intergenic not near genes chr2R 14142502 intergenic not near genes chr2R 14142557 intergenic not near genes chr2R_5_14140001 chr2R_14140001 RAL-787 528 chr2R 14393865 14393875 chr2R 14393950 14393957 6 84 8.5 2.0 5.2 1.0 92 chr2R 14393865 intergenic not near genes chr2R 14393911 intergenic not near genes chr2R 14393957 intergenic not near genes chr2R_6_14390001 chr2R_14390001 RAL-787 529 chr2R 14393876 14393897 chr2R 14393949 14393981 6 81 3.5 2.0 2.8 1.6 105 chr2R 14393876 intergenic not near genes chr2R 14393928 intergenic not near genes chr2R 14393981 intergenic not near genes chr2R_6_14390001 chr2R_14390001 RAL-787 530 chr2R 14394236 14394243 chr2R 14399024 14399032 Doc 4 4789 6.0 3.5 4.8 0.7 4796 chr2R 14394236 intergenic not near genes chr2R 14396634 intergenic not near genes chr2R 14399032 intergenic not near genes chr2R_4_14395001 chr2R_14395001 RAL-787 531 chr2R 14467312 14467315 chr2R 14476455 14476464 roo 4 9146 1.5 10.0 5.8 0.6 9152 chr2R 14467312 intergenic not near genes chr2R 14471888 intergenic not near genes chr2R 14476464 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-787 532 chr2R 14467318 14467325 chr2R 14476443 14476476 roo 4 9131 1.5 7.0 4.2 0.8 9158 chr2R 14467318 intergenic not near genes chr2R 14471897 intergenic not near genes chr2R 14476476 5` UTR CR44462 + chr2R_4_14470001 chr2R_14470001 RAL-787 533 chr2R 14530746 14530774 chr2R 14530824 14530854 9 78 3.5 1.5 2.5 2.6 108 chr2R 14530746 intron ttv + chr2R 14530800 intron ttv + chr2R 14530854 intron ttv + chr2R_9_14530001 chr2R_14530001 RAL-787 534 chr2R 14566445 14566478 chr2R 14566532 14566565 8 87 2.5 2.5 2.5 2.3 120 chr2R 14566445 intron ttv + chr2R 14566505 intron ttv + chr2R 14566565 intron ttv + chr2R_8_14565001 chr2R_14565001 RAL-787 535 chr2R 14702336 14702361 chr2R 14702418 14702443 11 82 0.5 2.0 1.2 5.0 107 chr2R 14702336 intron mspo - chr2R 14702390 intron mspo - chr2R 14702443 intron mspo - chr2R_11_14700001 chr2R_14700001 RAL-787 536 chr2R 14911707 14911728 chr2R 14911830 14911851 14 122 3.0 4.5 3.8 2.9 144 chr2R 14911707 intron CG10249 - chr2R 14911779 intron CG10249 - chr2R 14911851 intron CG10249 - chr2R_14_14910001 chr2R_14910001 RAL-787 537 chr2R 14934457 14934469 chr2R 14934545 14934557 4 88 1.5 0.0 0.8 2.2 100 chr2R 14934457 intron CG10253 - chr2R 14934507 intron CG10253 - chr2R 14934557 intron CG10253 - chr2R_4_14930001 chr2R_14930001 RAL-787 538 chr2R 14955207 14955230 chr2R 14955356 14955380 10 144 2.5 7.0 4.8 1.7 173 chr2R 14955207 intron aPKC - chr2R 14955294 intron aPKC - chr2R 14955380 intron aPKC - chr2R_10_14955001 chr2R_14955001 RAL-787 539 chr2R 15004729 15004752 chr2R 15005057 15005081 jockey 7 329 0.5 1.5 1.0 3.5 352 chr2R 15004729 intergenic not near genes chr2R 15004905 intergenic not near genes chr2R 15005081 intergenic not near genes chr2R_7_15000001 chr2R_15000001 RAL-787 540 chr2R 15015455 15015487 chr2R 15022879 15022909 mdg1 8 7424 3.0 4.0 3.5 1.8 7454 chr2R 15015455 intron hbs + chr2R 15019182 intron hbs + chr2R 15022909 intron hbs + chr2R_8_15015001 chr2R_15015001 RAL-787 541 chr2R 15070552 15070582 chr2R 15070639 15070671 7 87 2.5 1.5 2.0 2.3 119 chr2R 15070552 intergenic not near genes chr2R 15070612 intergenic not near genes chr2R 15070671 intergenic not near genes chr2R_7_15070001 chr2R_15070001 RAL-787 542 chr2R 15084988 15084996 chr2R 15092037 15092045 297 6 7049 5.0 3.5 4.2 1.2 7057 chr2R 15084988 intergenic not near genes chr2R 15088516 intergenic not near genes chr2R 15092045 5` UTR CR44457 + chr2R_6_15085001 chr2R_15085001 RAL-787 543 chr2R 15109353 15109365 chr2R 15109429 15109457 4 88 5.0 4.0 4.5 0.7 104 chr2R 15109353 intergenic not near genes chr2R 15109405 intergenic not near genes chr2R 15109457 intergenic not near genes chr2R_4_15105001 chr2R_15105001 RAL-787 544 chr2R 15119330 15119349 chr2R 15127801 15127808 Tirant 6 8470 5.0 3.5 4.2 1.2 8478 chr2R 15119330 intron chn + chr2R 15123569 intron chn + chr2R 15127808 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-787 545 chr2R 15137967 15137982 chr2R 15138047 15138062 5 80 5.0 0.0 2.5 1.4 95 chr2R 15137967 intron chn + chr2R 15138014 intron chn + chr2R 15138062 intron chn + chr2R_5_15135001 chr2R_15135001 RAL-787 546 chr2R 15168279 15168301 chr2R 15168372 15168393 8 92 1.5 2.5 2.0 2.7 114 chr2R 15168279 intron igl + chr2R 15168336 intron igl + chr2R 15168393 intron igl + chr2R_8_15165001 chr2R_15165001 RAL-787 547 chr2R 15235064 15235093 chr2R 15235178 15235207 11 113 1.0 3.0 2.0 3.7 143 chr2R 15235064 intron Fs - chr2R 15235136 intron Fs - chr2R 15235207 intron Fs - chr2R_11_15235001 chr2R_15235001 RAL-787 548 chr2R 15296161 15296173 chr2R 15296242 15296250 7 81 3.0 2.0 2.5 2.0 89 chr2R 15296161 intron Trpm - chr2R 15296206 intron Trpm - chr2R 15296250 intron Trpm - chr2R_7_15295001 chr2R_15295001 RAL-787 549 chr2R 15336295 15336313 chr2R 15336369 15336387 11 75 1.5 6.0 3.8 2.3 92 chr2R 15336295 intron Hr51 + chr2R 15336341 intron Hr51 + chr2R 15336387 intron Hr51 + chr2R_11_15335001 chr2R_15335001 RAL-787 550 chr2R 15359313 15359326 chr2R 15359407 15359419 4 94 0.5 1.5 1.0 2.0 106 chr2R 15359313 intron unc-5 + chr2R 15359366 intron unc-5 + chr2R 15359419 intron unc-5 + chr2R_4_15355001 chr2R_15355001 RAL-787 551 chr2R 15395856 15395889 chr2R 15395961 15395992 10 100 4.0 6.5 5.2 1.6 136 chr2R 15395856 intergenic not near genes chr2R 15395924 intergenic not near genes chr2R 15395992 intergenic not near genes chr2R_10_15395001 chr2R_15395001 RAL-787 552 chr2R 15410780 15410797 chr2R 15410972 15410989 4 192 5.5 2.0 3.8 0.8 209 chr2R 15410780 intron CG43729 + chr2R 15410884 intron CG43729 + chr2R 15410989 intron CG43729 + chr2R_4_15410001 chr2R_15410001 RAL-787 553 chr2R 15573016 15573023 chr2R 15573129 15573136 4 113 5.0 0.0 2.5 1.1 120 chr2R 15573016 3` UTR CG30466 + chr2R 15573076 3` UTR CG30466 + chr2R 15573136 3` UTR CG30466 + chr2R_4_15570001 chr2R_15570001 RAL-787 554 chr2R 15645772 15645795 chr2R 15645987 15646010 9 215 15.5 20.5 18.0 0.5 238 chr2R 15645772 intron CG42524 + chr2R 15645891 intron CG42524 + chr2R 15646010 intron CG42524 + chr2R_9_15645001 chr2R_15645001 RAL-787 555 chr2R 15679108 15679130 chr2R 15679192 15679214 6 83 0.5 0.0 0.2 5.0 106 chr2R 15679108 intergenic CG8207 -,Vha14-1 - chr2R 15679161 intergenic CG8207 -,Vha14-1 - chr2R 15679214 intergenic Vha14-1 -,CG8207 - chr2R_6_15675001 chr2R_15675001 RAL-787 556 chr2R 15700252 15700278 chr2R 15700347 15700370 9 93 1.5 2.5 2.0 3.0 118 chr2R 15700252 intron,5` UTR CG30080 -,CG42662 - chr2R 15700311 intron,5` UTR CG30080 -,CG42662 - chr2R 15700370 intron,5` UTR CG30080 -,CG42662 - chr2R_9_15700001 chr2R_15700001 RAL-787 557 chr2R 15723602 15723627 chr2R 15723696 15723716 4 93 1.0 1.5 1.2 1.8 114 chr2R 15723602 intergenic not near genes chr2R 15723659 intergenic not near genes chr2R 15723716 intergenic not near genes chr2R_4_15720001 chr2R_15720001 RAL-787 558 chr2R 15898878 15898910 chr2R 15898975 15899008 8 98 4.0 1.5 2.8 2.1 130 chr2R 15898878 intron sli - chr2R 15898943 intron sli - chr2R 15899008 intron sli - chr2R_8_15895001 chr2R_15895001 RAL-787 559 chr2R 16050595 16050614 chr2R 16050675 16050677 5 78 2.0 5.5 3.8 1.0 82 chr2R 16050595 intron CG8405 + chr2R 16050636 intron CG8405 + chr2R 16050677 intron CG8405 + chr2R_5_16050001 chr2R_16050001 RAL-787 560 chr2R 16074888 16074910 chr2R 16074966 16074989 8 77 5.5 0.0 2.8 2.1 101 chr2R 16074888 intergenic not near genes chr2R 16074938 intergenic not near genes chr2R 16074989 intergenic not near genes chr2R_8_16070001 chr2R_16070001 RAL-787 561 chr2R 16410757 16410773 chr2R 16410836 16410852 5 79 8.0 6.0 7.0 0.6 95 chr2R 16410757 intron Sema-2b + chr2R 16410804 intron Sema-2b + chr2R 16410852 intron Sema-2b + chr2R_5_16410001 chr2R_16410001 RAL-787 562 chr2R 16496337 16496349 chr2R 16496416 16496426 4 79 7.5 4.0 5.8 0.6 89 chr2R 16496337 intergenic not near genes chr2R 16496382 intergenic not near genes chr2R 16496426 intergenic CG7813 - chr2R_4_16495001 chr2R_16495001 RAL-787 563 chr2R 16518053 16518060 chr2R 16518124 16518136 4 75 3.0 2.0 2.5 1.1 83 chr2R 16518053 intron Sema-2a + chr2R 16518094 intron Sema-2a + chr2R 16518136 intron Sema-2a + chr2R_4_16515001 chr2R_16515001 RAL-787 564 chr2R 16547013 16547029 chr2R 16547092 16547109 7 79 0.0 1.0 0.5 4.7 96 chr2R 16547013 intergenic not near genes chr2R 16547061 intergenic not near genes chr2R 16547109 intergenic not near genes chr2R_7_16545001 chr2R_16545001 RAL-787 565 chr2R 16571874 16571897 chr2R 16571969 16571992 4 94 4.0 1.5 2.8 1.1 118 chr2R 16571874 intergenic CG4927 + chr2R 16571933 intergenic CG4927 + chr2R 16571992 intergenic CG4927 + chr2R_4_16570001 chr2R_16570001 RAL-787 566 chr2R 16668448 16668478 chr2R 16668757 16668787 6 308 9.5 7.0 8.2 0.7 339 chr2R 16668448 intergenic not near genes chr2R 16668618 intergenic not near genes chr2R 16668787 intergenic not near genes chr2R_6_16665001 chr2R_16665001 RAL-787 567 chr2R 16670142 16670174 chr2R 16670218 16670252 8 76 7.5 10.0 8.8 0.8 110 chr2R 16670142 intergenic CG34457 + chr2R 16670197 intergenic CG34457 + chr2R 16670252 intergenic CG34457 + chr2R_8_16670001 chr2R_16670001 RAL-787 568 chr2R 16737135 16737159 chr2R 16737235 16737259 6 100 5.5 4.5 5.0 1.0 124 chr2R 16737135 3` UTR CG43104 - chr2R 16737197 3` UTR CG43104 - chr2R 16737259 exon CG43104 - chr2R_6_16735001 chr2R_16735001 RAL-787 569 chr2R 16740902 16740921 chr2R 16740984 16741015 13 91 1.0 4.5 2.8 3.4 113 chr2R 16740902 intergenic not near genes chr2R 16740958 intergenic not near genes chr2R 16741015 intergenic not near genes chr2R_13_16740001 chr2R_16740001 RAL-787 570 chr2R 16775644 16775673 chr2R 16775908 16775937 9 263 0.0 1.5 0.8 5.0 293 chr2R 16775644 3` UTR Arp53D + chr2R 16775790 intergenic Arp53D + chr2R 16775937 intergenic Arp53D + chr2R_9_16775001 chr2R_16775001 RAL-787 571 chr2R 16893780 16893798 chr2R 16893861 16893878 5 82 7.5 11.5 9.5 0.5 98 chr2R 16893780 intron CG8910 - chr2R 16893829 intron CG8910 - chr2R 16893878 intron CG8910 - chr2R_5_16890001 chr2R_16890001 RAL-787 572 chr2R 16926871 16926884 chr2R 16926965 16926979 6 95 5.5 2.5 4.0 1.2 108 chr2R 16926871 intron Pkc53E + chr2R 16926925 intron Pkc53E + chr2R 16926979 intron Pkc53E + chr2R_6_16925001 chr2R_16925001 RAL-787 573 chr2R 17147248 17147270 chr2R 17152279 17152301 jockey 5 5031 4.0 3.5 3.8 1.0 5053 chr2R 17147248 intergenic not near genes chr2R 17149774 intergenic not near genes chr2R 17152301 intergenic not near genes chr2R_5_17145001 chr2R_17145001 RAL-787 574 chr2R 17161359 17161362 chr2R 17161566 17161569 4 207 3.0 0.0 1.5 1.6 210 chr2R 17161359 intergenic not near genes chr2R 17161464 intergenic not near genes chr2R 17161569 intergenic not near genes chr2R_4_17160001 chr2R_17160001 RAL-787 575 chr2R 17169298 17169322 chr2R 17169538 17169562 9 240 3.0 4.5 3.8 1.9 264 chr2R 17169298 intergenic not near genes chr2R 17169430 intergenic not near genes chr2R 17169562 intergenic not near genes chr2R_9_17165001 chr2R_17165001 RAL-787 576 chr2R 17176352 17176384 chr2R 17182542 17182574 diver 5 6190 1.0 2.0 1.5 2.0 6222 chr2R 17176352 intergenic not near genes chr2R 17179463 intergenic not near genes chr2R 17182574 intergenic not near genes chr2R_5_17175001 chr2R_17175001 RAL-787 577 chr2R 17236507 17236539 chr2R 17241711 17241743 copia 10 5204 1.5 1.0 1.2 4.5 5236 chr2R 17236507 intron mbl + chr2R 17239125 intron mbl + chr2R 17241743 intron mbl + chr2R_10_17235001 chr2R_17235001 RAL-787 578 chr2R 17250910 17250936 chr2R 17250986 17251014 8 76 3.5 3.5 3.5 1.8 104 chr2R 17250910 intron mbl + chr2R 17250962 intron mbl + chr2R 17251014 intron mbl + chr2R_8_17250001 chr2R_17250001 RAL-787 579 chr2R 17459008 17459024 chr2R 17459093 17459109 6 85 5.0 0.5 2.8 1.6 101 chr2R 17459008 intron CG14478 + chr2R 17459058 intron CG14478 + chr2R 17459109 intron CG14478 + chr2R_6_17455001 chr2R_17455001 RAL-787 580 chr2R 17485919 17485941 chr2R 17490681 17490703 F-element 5 4762 0.5 0.0 0.2 4.2 4784 chr2R 17485919 5` UTR,intron CG43110 -,NT5E-2 + chr2R 17488311 intron NT5E-2 + chr2R 17490703 intron NT5E-2 + chr2R_5_17485001 chr2R_17485001 RAL-787 581 chr2R 17500675 17500685 chr2R 17500751 17500758 5 75 0.0 2.5 1.2 2.3 83 chr2R 17500675 intergenic not near genes chr2R 17500716 intergenic not near genes chr2R 17500758 intergenic not near genes chr2R_5_17500001 chr2R_17500001 RAL-787 582 chr2R 17709990 17710116 chr2R 17710081 17710194 7 81 1.5 2.0 1.8 2.5 204 chr2R 17709990 intron CG6424 - chr2R 17710092 intron CG6424 - chr2R 17710194 intron CG6424 - chr2R_7_17710001 chr2R_17710001 RAL-787 583 chr2R 17784025 17784057 chr2R 17784266 17784298 pogo 11 239 4.0 3.5 3.8 2.3 273 chr2R 17784025 intergenic mir-31a - chr2R 17784162 intergenic mir-31a - chr2R 17784298 intergenic mir-31a - chr2R_11_17780001 chr2R_17780001 RAL-787 584 chr2R 17835033 17835063 chr2R 17835127 17835157 9 92 1.5 3.0 2.2 2.8 124 chr2R 17835033 intron grh + chr2R 17835095 intron grh + chr2R 17835157 intron grh + chr2R_9_17835001 chr2R_17835001 RAL-787 585 chr2R 17898856 17898885 chr2R 17898945 17898975 4 89 3.5 3.0 3.2 1.0 119 chr2R 17898856 intron Elk + chr2R 17898916 intron Elk + chr2R 17898975 intron Elk + chr2R_4_17895001 chr2R_17895001 RAL-787 586 chr2R 17922680 17922709 chr2R 17922807 17922836 9 127 0.5 1.5 1.0 4.5 156 chr2R 17922680 intron Elk + chr2R 17922758 intron Elk + chr2R 17922836 intron Elk + chr2R_9_17920001 chr2R_17920001 RAL-787 587 chr2R 18245625 18245655 chr2R 18245702 18245730 5 76 1.0 0.5 0.8 2.8 105 chr2R 18245625 intergenic not near genes chr2R 18245678 intergenic CR44420 - chr2R 18245730 intergenic CR44420 - chr2R_5_18245001 chr2R_18245001 RAL-787 588 chr2R 18358397 18358416 chr2R 18372608 18372628 roo 7 14212 3.5 0.0 1.8 2.5 14231 chr2R 18358397 intergenic not near genes chr2R 18365512 intergenic not near genes chr2R 18372628 intergenic not near genes chr2R_7_18365001 chr2R_18365001 RAL-787 589 chr2R 18408929 18408961 chr2R 18409024 18409056 14 89 2.5 1.5 2.0 4.7 127 chr2R 18408929 3` UTR GstE8 + chr2R 18408992 intergenic GstE8 +,GstE9 + chr2R 18409056 5` UTR GstE9 + chr2R_14_18405001 chr2R_18405001 RAL-787 590 chr2R 18526590 18526620 chr2R 18526672 18526702 9 81 5.0 1.5 3.2 2.1 112 chr2R 18526590 intergenic CG43066 + chr2R 18526646 intergenic CG43066 + chr2R 18526702 intergenic CG43066 + chr2R_9_18525001 chr2R_18525001 RAL-787 591 chr2R 18575153 18575160 chr2R 18575370 18575377 5 217 3.5 3.5 3.5 1.1 224 chr2R 18575153 intron GEFmeso - chr2R 18575265 intron GEFmeso - chr2R 18575377 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-787 592 chr2R 18575817 18575829 chr2R 18581987 18582017 3S18 7 6180 1.5 3.5 2.5 2.0 6200 chr2R 18575817 intron GEFmeso - chr2R 18578917 intron GEFmeso - chr2R 18582017 intron GEFmeso - chr2R_7_18575001 chr2R_18575001 RAL-787 593 chr2R 18590868 18590898 chr2R 18600019 18600044 roo 11 9151 5.0 3.5 4.2 2.1 9176 chr2R 18590868 intron GEFmeso - chr2R 18595456 intron GEFmeso - chr2R 18600044 intron GEFmeso - chr2R_11_18595001 chr2R_18595001 RAL-787 594 chr2R 18602871 18602873 chr2R 18602941 18602955 4 79 3.0 4.0 3.5 0.9 84 chr2R 18602871 intron GEFmeso - chr2R 18602913 intron GEFmeso - chr2R 18602955 intron GEFmeso - chr2R_4_18600001 chr2R_18600001 RAL-787 595 chr2R 18726897 18727107 chr2R 18726980 18727279 17 139 2.5 1.5 2.0 5.7 382 chr2R 18726897 intron Hs3st-A + chr2R 18727088 intron Hs3st-A + chr2R 18727279 intron Hs3st-A + chr2R_17_18725001 chr2R_18725001 RAL-787 596 chr2R 18862319 18862401 chr2R 18862405 18862485 5 85 0.0 0.0 0.0 5.0 166 chr2R 18862319 intergenic Jheh3 - chr2R 18862402 intergenic Jheh3 -,CG43069 + chr2R 18862485 intergenic CG43069 +,Jheh3 - chr2R_5_18860001 chr2R_18860001 RAL-787 597 chr2R 18883700 18883734 chr2R 18883780 18883810 12 80 1.5 1.0 1.2 5.5 110 chr2R 18883700 intron sano + chr2R 18883755 intron sano + chr2R 18883810 intron sano + chr2R_12_18880001 chr2R_18880001 RAL-787 598 chr2R 18926505 18926530 chr2R 18926592 18926617 10 86 0.5 4.0 2.2 3.1 112 chr2R 18926505 intron sano + chr2R 18926561 intron sano + chr2R 18926617 intron sano + chr2R_10_18925001 chr2R_18925001 RAL-787 599 chr2R 18964936 18964953 chr2R 18965012 18965029 7 76 2.0 4.0 3.0 1.8 93 chr2R 18964936 intergenic not near genes chr2R 18964982 intergenic not near genes chr2R 18965029 intergenic not near genes chr2R_7_18960001 chr2R_18960001 RAL-787 600 chr2R 19012941 19012970 chr2R 19013035 19013061 9 92 0.5 3.5 2.0 3.0 120 chr2R 19012941 intergenic not near genes chr2R 19013001 intergenic not near genes chr2R 19013061 intergenic not near genes chr2R_9_19010001 chr2R_19010001 RAL-787 601 chr2R 19169562 19169563 chr2R 19169727 19169748 4 180 3.5 0.5 2.0 1.3 186 chr2R 19169562 intron CG10737 + chr2R 19169655 intron CG10737 + chr2R 19169748 intron CG10737 + chr2R_4_19165001 chr2R_19165001 RAL-787 602 chr2R 19424832 19424862 chr2R 19424932 19424961 5 98 2.5 1.5 2.0 1.7 129 chr2R 19424832 5` UTR hts - chr2R 19424896 5` UTR hts - chr2R 19424961 intergenic hts -,CalpA + chr2R_5_19420001 chr2R_19420001 RAL-787 603 chr2R 19682607 19682624 chr2R 19682697 19682706 4 88 5.0 4.0 4.5 0.7 99 chr2R 19682607 3` UTR CG34198 - chr2R 19682656 3` UTR CG34198 - chr2R 19682706 3` UTR CG34198 - chr2R_4_19680001 chr2R_19680001 RAL-787 604 chr2R 19776597 19776630 chr2R 19779919 19779952 jockey 11 3322 1.5 3.0 2.2 3.4 3355 chr2R 19776597 intergenic not near genes chr2R 19778274 intergenic not near genes chr2R 19779952 intergenic not near genes chr2R_11_19775001 chr2R_19775001 RAL-787 605 chr2R 19914848 19914858 chr2R 19922260 19922270 mdg1 4 7412 4.0 1.0 2.5 1.1 7422 chr2R 19914848 intergenic not near genes chr2R 19918559 intergenic not near genes chr2R 19922270 intergenic not near genes chr2R_4_19915001 chr2R_19915001 RAL-787 606 chr2R 19957434 19957463 chr2R 19962631 19962659 copia 9 5201 2.0 1.5 1.8 3.2 5225 chr2R 19957434 intergenic CG44623 + chr2R 19960046 intergenic not near genes chr2R 19962659 intergenic not near genes chr2R_9_19960001 chr2R_19960001 RAL-787 607 chr2R 20080606 20080622 chr2R 20080681 20080698 12 76 0.0 5.5 2.8 3.2 92 chr2R 20080606 intergenic not near genes chr2R 20080652 intergenic not near genes chr2R 20080698 intergenic not near genes chr2R_12_20080001 chr2R_20080001 RAL-787 608 chr2R 20109293 20109321 chr2R 20109380 20109409 13 87 1.5 5.0 3.2 3.1 116 chr2R 20109293 intergenic not near genes chr2R 20109351 intergenic not near genes chr2R 20109409 intergenic not near genes chr2R_13_20105001 chr2R_20105001 RAL-787 609 chr2R 20125733 20125740 chr2R 20125809 20125816 4 76 1.0 0.0 0.5 2.7 83 chr2R 20125733 intergenic not near genes chr2R 20125774 intergenic not near genes chr2R 20125816 intergenic not near genes chr2R_4_20125001 chr2R_20125001 RAL-787 610 chr2R 20223950 20223974 chr2R 20224034 20224058 5 83 2.5 0.0 1.2 2.3 108 chr2R 20223950 intergenic not near genes chr2R 20224004 intergenic not near genes chr2R 20224058 intergenic not near genes chr2R_5_20220001 chr2R_20220001 RAL-787 611 chr2R 20326759 20326793 chr2R 20326836 20326869 13 72 3.0 1.5 2.2 4.1 110 chr2R 20326759 5` UTR MED8 - chr2R 20326814 intergenic MED8 -,CG8929 + chr2R 20326869 intergenic MED8 -,CG8929 + chr2R_13_20325001 chr2R_20325001 RAL-787 612 chr2R 20441051 20441070 chr2R 20441139 20441158 6 85 2.0 2.5 2.2 1.9 107 chr2R 20441051 intron CG12484 + chr2R 20441104 intron CG12484 + chr2R 20441158 intron CG12484 + chr2R_6_20440001 chr2R_20440001 RAL-787 613 chr2R 20508184 20508198 chr2R 20508261 20508273 4 77 1.5 5.0 3.2 1.0 89 chr2R 20508184 intergenic CR44646 + chr2R 20508228 intergenic CR44646 + chr2R 20508273 intergenic CR44646 + chr2R_4_20505001 chr2R_20505001 RAL-787 614 chr2R 20523056 20523068 chr2R 20523150 20523159 4 96 1.5 4.5 3.0 1.0 103 chr2R 20523056 intergenic not near genes chr2R 20523108 intergenic not near genes chr2R 20523159 intergenic not near genes chr2R_4_20520001 chr2R_20520001 RAL-787 615 chr2R 20541986 20542017 chr2R 20542064 20542095 10 78 1.5 2.5 2.0 3.3 109 chr2R 20541986 intergenic not near genes chr2R 20542040 intergenic not near genes chr2R 20542095 intergenic not near genes chr2R_10_20540001 chr2R_20540001 RAL-787 616 chr2R 20572576 20572588 chr2R 20572664 20572673 5 89 1.0 3.5 2.2 1.6 97 chr2R 20572576 intron qsm - chr2R 20572624 intron qsm - chr2R 20572673 intron qsm - chr2R_5_20570001 chr2R_20570001 RAL-787 617 chr2R 20601720 20601753 chr2R 20601805 20601826 7 82 1.0 2.0 1.5 2.8 106 chr2R 20601720 intron bl + chr2R 20601773 intron bl + chr2R 20601826 intron bl + chr2R_7_20600001 chr2R_20600001 RAL-787 618 chr2R 20616955 20616967 chr2R 20617038 20617050 5 83 1.5 3.0 2.2 1.6 95 chr2R 20616955 intron Hil - chr2R 20617002 intron Hil - chr2R 20617050 intron Hil - chr2R_5_20615001 chr2R_20615001 RAL-787 619 chr2R 20739441 20739478 chr2R 20744209 20744233 F-element 5 4765 4.0 2.0 3.0 1.2 4792 chr2R 20739441 intron dpr + chr2R 20741837 intron dpr + chr2R 20744233 intron dpr + chr2R_5_20740001 chr2R_20740001 RAL-787 620 chr2R 20783320 20783326 chr2R 20788091 20788096 F-element 4 4771 1.5 2.5 2.0 1.3 4776 chr2R 20783320 intergenic not near genes chr2R 20785708 intergenic not near genes chr2R 20788096 intergenic CG43666 - chr2R_4_20785001 chr2R_20785001 RAL-787 621 chr2R 20962905 20962939 chr2R 20963003 20963037 9 98 2.0 3.5 2.8 2.4 132 chr2R 20962905 intergenic not near genes chr2R 20962971 intergenic not near genes chr2R 20963037 intergenic not near genes chr2R_9_20960001 chr2R_20960001 RAL-787 622 chr2R 21040877 21040887 chr2R 21040943 21040961 5 73 3.0 6.5 4.8 0.9 84 chr2R 21040877 intergenic not near genes chr2R 21040919 intergenic not near genes chr2R 21040961 intergenic not near genes chr2R_5_21040001 chr2R_21040001 RAL-787 623 chr2R 21043592 21043600 chr2R 21043679 21043683 4 86 1.5 7.5 4.5 0.7 91 chr2R 21043592 intergenic not near genes chr2R 21043638 intergenic not near genes chr2R 21043683 intergenic not near genes chr2R_4_21040001 chr2R_21040001 RAL-787 624 chr2R 21057487 21057504 chr2R 21057568 21057577 4 79 0.5 0.0 0.2 3.3 90 chr2R 21057487 intergenic shg -,cpa + chr2R 21057532 intergenic cpa +,shg - chr2R 21057577 intergenic cpa +,shg - chr2R_4_21055001 chr2R_21055001 RAL-787 625 chr2R 21141118 21141148 chr2R 21141214 21141244 11 96 0.0 2.5 1.2 5.0 126 chr2R 21141118 intron Magi - chr2R 21141181 intron Magi - chr2R 21141244 intron Magi - chr2R_11_21140001 chr2R_21140001 RAL-787 626 chr2R 21182925 21182941 chr2R 21183150 21183167 5 226 0.5 3.0 1.8 1.8 242 chr2R 21182925 intergenic Pu +,tud + chr2R 21183046 intergenic tud +,Pu + chr2R 21183167 intergenic tud + chr2R_5_21180001 chr2R_21180001 RAL-787 627 chr2R 21241770 21241791 chr2R 21242614 21242633 6 844 2.5 3.0 2.8 1.6 863 chr2R 21241770 intron ASPP - chr2R 21242202 intron ASPP - chr2R 21242633 intron ASPP - chr2R_6_21240001 chr2R_21240001 RAL-787 628 chr2R 21363136 21363142 chr2R 21363234 21363240 4 98 0.0 0.0 0.0 4.0 104 chr2R 21363136 intron cv-2 - chr2R 21363188 intron cv-2 - chr2R 21363240 intron cv-2 - chr2R_4_21360001 chr2R_21360001 RAL-787 629 chr2R 21472311 21472337 chr2R 21472389 21472415 6 78 3.0 0.5 1.8 2.1 104 chr2R 21472311 intron Sdc - chr2R 21472363 intron Sdc - chr2R 21472415 intron Sdc - chr2R_6_21470001 chr2R_21470001 RAL-787 630 chr2R 21700162 21700184 chr2R 21700248 21700270 8 86 2.0 7.0 4.5 1.5 108 chr2R 21700162 intron HmgZ - chr2R 21700216 intron HmgZ - chr2R 21700270 intron HmgZ - chr2R_8_21700001 chr2R_21700001 RAL-787 631 chr2R 21721576 21721605 chr2R 21721664 21721669 4 72 3.0 0.0 1.5 1.6 93 chr2R 21721576 intron LBR + chr2R 21721622 intron LBR + chr2R 21721669 intron LBR + chr2R_4_21720001 chr2R_21720001 RAL-787 632 chr2R 21753097 21753115 chr2R 21753568 21753599 roo 7 480 5.5 3.5 4.5 1.3 502 chr2R 21753097 intergenic not near genes chr2R 21753348 intergenic not near genes chr2R 21753599 intergenic not near genes chr2R_7_21750001 chr2R_21750001 RAL-787 633 chr2R 21759564 21759578 chr2R 21759651 21759665 7 86 4.5 1.0 2.8 1.8 101 chr2R 21759564 intergenic not near genes chr2R 21759614 intergenic not near genes chr2R 21759665 intergenic not near genes chr2R_7_21755001 chr2R_21755001 RAL-787 634 chr2R 21759581 21759589 chr2R 21759647 21759674 6 76 2.5 1.0 1.8 2.1 93 chr2R 21759581 intergenic not near genes chr2R 21759628 intergenic not near genes chr2R 21759674 intergenic not near genes chr2R_6_21755001 chr2R_21755001 RAL-787 635 chr2R 21867009 21867022 chr2R 21867097 21867110 6 88 1.5 1.5 1.5 2.4 101 chr2R 21867009 intergenic comr - chr2R 21867060 intergenic comr - chr2R 21867110 intergenic comr - chr2R_6_21865001 chr2R_21865001 RAL-787 636 chr2R 21880609 21880636 chr2R 21880706 21880730 5 98 3.0 2.5 2.8 1.3 121 chr2R 21880609 intron Fili + chr2R 21880670 intron Fili + chr2R 21880730 intron Fili + chr2R_5_21880001 chr2R_21880001 RAL-787 637 chr2R 21888312 21888323 chr2R 21888409 21888420 5 97 1.5 1.0 1.2 2.3 108 chr2R 21888312 intron Fili + chr2R 21888366 intron Fili + chr2R 21888420 intron Fili + chr2R_5_21885001 chr2R_21885001 RAL-787 638 chr2R 21903843 21903872 chr2R 21903925 21903954 8 82 3.0 1.0 2.0 2.7 111 chr2R 21903843 intron Fili + chr2R 21903898 intron Fili + chr2R 21903954 intron Fili + chr2R_8_21900001 chr2R_21900001 RAL-787 639 chr2R 21932262 21932276 chr2R 21932332 21932354 7 74 3.5 2.5 3.0 1.8 92 chr2R 21932262 intron Fili + chr2R 21932308 intron Fili + chr2R 21932354 intron Fili + chr2R_7_21930001 chr2R_21930001 RAL-787 640 chr2R 22072685 22072714 chr2R 22072770 22072798 15 85 1.5 4.5 3.0 3.8 113 chr2R 22072685 intron CG11474 - chr2R 22072742 intron CG11474 - chr2R 22072798 exon CG11474 - chr2R_15_22070001 chr2R_22070001 RAL-787 641 chr2R 22349707 22349720 chr2R 22351487 22351504 jockey 4 1782 5.5 5.5 5.5 0.6 1797 chr2R 22349707 intron Liprin-gamma - chr2R 22350606 intron Liprin-gamma - chr2R 22351504 intron Liprin-gamma - chr2R_4_22350001 chr2R_22350001 RAL-787 642 chr2R 22360381 22360400 chr2R 22360814 22360831 jockey 8 431 4.5 3.5 4.0 1.6 450 chr2R 22360381 intron Liprin-gamma - chr2R 22360606 intron Liprin-gamma - chr2R 22360831 intron Liprin-gamma - chr2R_8_22360001 chr2R_22360001 RAL-787 643 chr2R 22371056 22371070 chr2R 22371435 22371449 5 379 2.5 0.0 1.2 2.3 393 chr2R 22371056 intron Liprin-gamma - chr2R 22371252 intron Liprin-gamma - chr2R 22371449 intron Liprin-gamma - chr2R_5_22370001 chr2R_22370001 RAL-787 644 chr2R 22460382 22460405 chr2R 22460460 22460484 5 79 4.0 2.0 3.0 1.2 102 chr2R 22460382 intron CG10384 + chr2R 22460433 intron CG10384 + chr2R 22460484 intron CG10384 + chr2R_5_22460001 chr2R_22460001 RAL-787 645 chr2R 22503884 22503888 chr2R 22504072 22504075 4 188 3.5 2.0 2.8 1.1 191 chr2R 22503884 intron px - chr2R 22503980 intron px - chr2R 22504075 intron px - chr2R_4_22500001 chr2R_22500001 RAL-787 646 chr2R 22525755 22525782 chr2R 22529310 22529337 jockey 10 3554 2.0 3.5 2.8 2.6 3582 chr2R 22525755 intron px - chr2R 22527546 intron px - chr2R 22529337 intron px - chr2R_10_22525001 chr2R_22525001 RAL-787 647 chr2R 22599174 22599188 chr2R 22599269 22599278 7 93 1.5 9.0 5.2 1.1 104 chr2R 22599174 intron CG4269 + chr2R 22599226 intron CG4269 + chr2R 22599278 intron CG4269 + chr2R_7_22595001 chr2R_22595001 RAL-787 648 chr2R 22774963 22774988 chr2R 22775381 22775389 jockey 4 414 8.0 3.0 5.5 0.6 426 chr2R 22774963 intron CG42260 - chr2R 22775176 intron CG42260 - chr2R 22775389 intron CG42260 - chr2R_4_22775001 chr2R_22775001 RAL-787 649 chr2R 22843030 22843048 chr2R 22844992 22845010 flea 4 1962 3.0 4.5 3.8 0.8 1980 chr2R 22843030 intergenic CG9826 + chr2R 22844020 intergenic not near genes chr2R 22845010 intergenic not near genes chr2R_4_22840001 chr2R_22840001 RAL-787 650 chr2R 22911552 22911565 chr2R 22911821 22911843 4 271 4.5 16.5 10.5 0.3 291 chr2R 22911552 exon nahoda + chr2R 22911698 exon nahoda + chr2R 22911843 exon nahoda + chr2R_4_22910001 chr2R_22910001 RAL-787 651 chr2R 22941827 22941852 chr2R 22941906 22941931 5 79 2.5 4.5 3.5 1.1 104 chr2R 22941827 intergenic CG42694 + chr2R 22941879 5` UTR CG42694 + chr2R 22941931 5` UTR CG42694 + chr2R_5_22940001 chr2R_22940001 RAL-787 652 chr2R 22945056 22945080 chr2R 22945170 22945194 4 112 14.0 15.5 14.8 0.3 138 chr2R 22945056 exon CG42694 + chr2R 22945125 3` UTR CG42694 + chr2R 22945194 intergenic CG42694 + chr2R_4_22945001 chr2R_22945001 RAL-787 653 chr2R 22991633 22991654 chr2R 22991725 22991742 4 91 2.0 3.5 2.8 1.1 109 chr2R 22991633 intron twi + chr2R 22991688 intron twi + chr2R 22991742 intron twi + chr2R_4_22990001 chr2R_22990001 RAL-787 654 chr2R 23037272 23037302 chr2R 23037346 23037378 8 72 5.5 2.5 4.0 1.6 106 chr2R 23037272 intron,intron twi +,CG42741 - chr2R 23037325 intron,intron twi +,CG42741 - chr2R 23037378 intron,intron twi +,CG42741 - chr2R_8_23035001 chr2R_23035001 RAL-787 655 chr2R 23052659 23052687 chr2R 23052733 23052762 8 74 3.0 4.0 3.5 1.8 103 chr2R 23052659 intergenic not near genes chr2R 23052710 intergenic not near genes chr2R 23052762 intergenic not near genes chr2R_8_23050001 chr2R_23050001 RAL-787 656 chr2R 23061753 23061788 chr2R 23061829 23061863 11 74 2.5 3.5 3.0 2.8 110 chr2R 23061753 3` UTR l(2)06496 - chr2R 23061808 3` UTR l(2)06496 - chr2R 23061863 3` UTR l(2)06496 - chr2R_11_23060001 chr2R_23060001 RAL-787 657 chr2R 23097860 23097885 chr2R 23097951 23097971 5 87 6.5 8.5 7.5 0.6 111 chr2R 23097860 intergenic not near genes chr2R 23097916 intergenic not near genes chr2R 23097971 intergenic not near genes chr2R_5_23095001 chr2R_23095001 RAL-787 658 chr2R 23186100 23186107 chr2R 23186245 23186252 4 145 2.0 2.0 2.0 1.3 152 chr2R 23186100 intron CG34371 - chr2R 23186176 intron CG34371 - chr2R 23186252 intron CG34371 - chr2R_4_23185001 chr2R_23185001 RAL-787 659 chr2R 23275677 23275683 chr2R 23275747 23275775 5 86 3.5 2.0 2.8 1.3 98 chr2R 23275677 intergenic ord - chr2R 23275726 intergenic ord - chr2R 23275775 intergenic ord - chr2R_5_23275001 chr2R_23275001 RAL-787 660 chr2R 23422646 23422680 chr2R 23422725 23422760 10 79 4.0 4.5 4.2 1.9 114 chr2R 23422646 intron CG9815 - chr2R 23422703 intron CG9815 - chr2R 23422760 intron CG9815 - chr2R_10_23420001 chr2R_23420001 RAL-787 661 chr2R 23450831 23450848 chr2R 23450914 23450930 5 82 9.5 5.0 7.2 0.6 99 chr2R 23450831 intron CG43795 + chr2R 23450880 intron CG43795 + chr2R 23450930 intron CG43795 + chr2R_5_23450001 chr2R_23450001 RAL-787 662 chr2R 23582485 23582506 chr2R 23582645 23582666 4 159 14.0 17.5 15.8 0.2 181 chr2R 23582485 intron apt + chr2R 23582576 intron apt + chr2R 23582666 intron apt + chr2R_4_23580001 chr2R_23580001 RAL-787 663 chr2R 23607038 23607192 chr2R 23607119 23607285 15 86 2.5 5.0 3.8 3.1 247 chr2R 23607038 intron CG17664 - chr2R 23607162 intron CG17664 - chr2R 23607285 intron CG17664 - chr2R_15_23605001 chr2R_23605001 RAL-787 664 chr2R 23914327 23914332 chr2R 23921925 23921944 412 6 7610 4.5 4.5 4.5 1.1 7617 chr2R 23914327 exon kcc + chr2R 23918136 intron kcc + chr2R 23921944 intron kcc + chr2R_6_23915001 chr2R_23915001 RAL-787 665 chr2R 24031381 24031411 chr2R 24031465 24031495 7 84 1.5 3.5 2.5 2.0 114 chr2R 24031381 5` UTR CG30172 - chr2R 24031438 intergenic CG30172 -,Chi - chr2R 24031495 intergenic Chi -,CG30172 - chr2R_7_24030001 chr2R_24030001 RAL-787 666 chr2R 24222957 24222970 chr2R 24223111 24223125 6 155 13.0 14.5 13.8 0.4 168 chr2R 24222957 intron CG30419 - chr2R 24223041 intron CG30419 - chr2R 24223125 intron CG30419 - chr2R_6_24220001 chr2R_24220001 RAL-787 667 chr2R 24351412 24351436 chr2R 24351492 24351509 4 79 5.5 4.5 5.0 0.7 97 chr2R 24351412 intron bs + chr2R 24351460 intron bs + chr2R 24351509 intron,3` UTR bs +,CR44811 - chr2R_4_24350001 chr2R_24350001 RAL-787 668 chr2R 24353443 24353459 chr2R 24361805 24361821 roo 7 8362 1.5 6.5 4.0 1.4 8378 chr2R 24353443 intron,intron bs +,CR44811 - chr2R 24357632 intron,intron bs +,CR44811 - chr2R 24361821 intron,intron bs +,CR44811 - chr2R_7_24355001 chr2R_24355001 RAL-787 669 chr2R 24383838 24383856 chr2R 24383919 24383933 5 80 2.0 4.5 3.2 1.2 95 chr2R 24383838 intron mAChR-A - chr2R 24383886 intron mAChR-A - chr2R 24383933 exon mAChR-A - chr2R_5_24380001 chr2R_24380001 RAL-787 670 chr2R 24548924 24548953 chr2R 24549008 24549020 9 79 6.0 3.0 4.5 1.6 96 chr2R 24548924 intron,intron CG4622 -,ITP + chr2R 24548972 intron,intron CG4622 -,ITP + chr2R 24549020 intron,intron CG4622 -,ITP + chr2R_9_24545001 chr2R_24545001 RAL-787 671 chr2R 24636910 24636927 chr2R 24636996 24637013 5 86 1.5 0.0 0.8 2.8 103 chr2R 24636910 intron CG13594 - chr2R 24636962 intron CG13594 - chr2R 24637013 intron CG13594 - chr2R_5_24635001 chr2R_24635001 RAL-787 672 chr2R 24647605 24647617 chr2R 24655162 24655171 412 4 7556 2.0 8.5 5.2 0.6 7566 chr2R 24647605 intergenic not near genes chr2R 24651388 intergenic not near genes chr2R 24655171 intergenic not near genes chr2R_4_24650001 chr2R_24650001 RAL-787 673 chr2R 24727898 24727918 chr2R 24735390 24735395 mdg1 5 7498 1.5 4.0 2.8 1.3 7497 chr2R 24727898 intron Mid1 - chr2R 24731646 intron Mid1 - chr2R 24735395 intron Mid1 - chr2R_5_24730001 chr2R_24730001 RAL-787 674 chr2R 24737146 24737174 chr2R 24737265 24737278 8 116 5.5 6.0 5.8 1.2 132 chr2R 24737146 intergenic Mid1 - chr2R 24737212 intergenic not near genes chr2R 24737278 intergenic not near genes chr2R_8_24735001 chr2R_24735001 RAL-787 675 chr2R 24763608 24763644 chr2R 24765584 24765619 G2 10 1973 3.0 3.0 3.0 2.5 2011 chr2R 24763608 exon CG3894 + chr2R 24764614 intron CG3894 + chr2R 24765619 exon CG3894 + chr2R_10_24760001 chr2R_24760001 RAL-787 676 chr2R 24844342 24844376 chr2R 24844428 24844461 10 85 3.0 4.0 3.5 2.2 119 chr2R 24844342 intergenic not near genes chr2R 24844402 intergenic not near genes chr2R 24844461 intergenic not near genes chr2R_10_24840001 chr2R_24840001 RAL-787 677 chr2R 25078986 25079020 chr2R 25079114 25079148 9 127 4.0 5.0 4.5 1.6 162 chr2R 25078986 intron gol - chr2R 25079067 intron gol - chr2R 25079148 intron gol - chr2R_9_25075001 chr2R_25075001 RAL-787 678 chr2R 25101278 25101304 chr2R 25101379 25101404 7 102 4.5 2.0 3.2 1.7 126 chr2R 25101278 intron lov - chr2R 25101341 intron lov - chr2R 25101404 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-787 679 chr2R 25104783 25104808 chr2R 25104905 25104933 4 124 3.5 0.5 2.0 1.3 150 chr2R 25104783 intron lov - chr2R 25104858 intron lov - chr2R 25104933 intron lov - chr2R_4_25100001 chr2R_25100001 RAL-787 680 chr3L 110220 110244 chr3L 119387 119410 roo 6 9167 3.0 6.0 4.5 1.1 9190 chr3L 110220 intergenic not near genes chr3L 114815 intergenic not near genes chr3L 119410 intergenic not near genes chr3L_6_110001 chr3L_110001 RAL-787 681 chr3L 122118 122131 chr3L 122198 122208 4 79 2.0 3.0 2.5 1.1 90 chr3L 122118 intergenic not near genes chr3L 122163 intergenic not near genes chr3L 122208 intergenic not near genes chr3L_4_120001 chr3L_120001 RAL-787 682 chr3L 402689 402717 chr3L 409741 409770 297 9 7050 5.0 5.5 5.2 1.5 7081 chr3L 402689 intergenic not near genes chr3L 406230 intergenic not near genes chr3L 409770 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-787 683 chr3L 421059 421080 chr3L 421155 421176 5 96 3.5 2.0 2.8 1.3 117 chr3L 421059 intergenic not near genes chr3L 421118 intergenic not near genes chr3L 421176 intergenic not near genes chr3L_5_420001 chr3L_420001 RAL-787 684 chr3L 428194 428206 chr3L 428314 428327 4 120 3.0 0.0 1.5 1.6 133 chr3L 428194 intergenic not near genes chr3L 428260 intergenic not near genes chr3L 428327 intergenic not near genes chr3L_4_425001 chr3L_425001 RAL-787 685 chr3L 524744 524777 chr3L 524827 524859 8 82 0.0 1.5 0.8 4.4 115 chr3L 524744 intron klar - chr3L 524802 intron klar - chr3L 524859 intron klar - chr3L_8_520001 chr3L_520001 RAL-787 686 chr3L 563977 563998 chr3L 564151 564177 12 177 3.5 6.0 4.8 2.1 200 chr3L 563977 intron hipk + chr3L 564077 intron hipk + chr3L 564177 intron hipk + chr3L_12_560001 chr3L_560001 RAL-787 687 chr3L 642471 642500 chr3L 642562 642586 5 90 1.5 3.0 2.2 1.6 115 chr3L 642471 5` UTR CR43334 + chr3L 642528 5` UTR CR43334 + chr3L 642586 5` UTR CR43334 + chr3L_5_640001 chr3L_640001 RAL-787 688 chr3L 651389 651421 chr3L 651477 651509 10 88 3.5 1.5 2.5 2.9 120 chr3L 651389 intergenic Gale +,CG3402 - chr3L 651449 intergenic CG3402 -,Gale + chr3L 651509 intergenic CG3402 -,Gale + chr3L_10_650001 chr3L_650001 RAL-787 689 chr3L 705901 705922 chr3L 705997 706018 9 96 4.5 2.5 3.5 2.0 117 chr3L 705901 intergenic CG13895 -,CR44514 + chr3L 705960 3` UTR CG13895 - chr3L 706018 3` UTR CG13895 - chr3L_9_705001 chr3L_705001 RAL-787 690 chr3L 857999 858031 chr3L 866480 866509 Tirant 5 8474 2.0 3.5 2.8 1.3 8510 chr3L 857999 intergenic not near genes chr3L 862254 intergenic not near genes chr3L 866509 5` UTR CG12502 + chr3L_5_860001 chr3L_860001 RAL-787 691 chr3L 900001 900017 chr3L 900084 900101 8 84 0.0 3.5 1.8 2.9 100 chr3L 900001 intergenic not near genes chr3L 900051 intergenic not near genes chr3L 900101 intergenic not near genes chr3L_8_900001 chr3L_900001 RAL-787 692 chr3L 908506 908525 chr3L 908633 908657 6 133 5.5 4.0 4.8 1.0 151 chr3L 908506 intergenic not near genes chr3L 908582 intergenic not near genes chr3L 908657 intergenic nerfin-1 + chr3L_6_905001 chr3L_905001 RAL-787 693 chr3L 925177 925209 chr3L 932602 932635 mdg1 7 7426 2.5 4.0 3.2 1.7 7458 chr3L 925177 intron Glut1 + chr3L 928906 intron Glut1 + chr3L 932635 intron Glut1 + chr3L_7_925001 chr3L_925001 RAL-787 694 chr3L 933916 933937 chr3L 934017 934040 9 102 4.5 5.0 4.8 1.6 124 chr3L 933916 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934040 intron Glut1 + chr3L_9_930001 chr3L_930001 RAL-787 695 chr3L 939770 939802 chr3L 940891 940923 jockey 13 1120 7.0 4.5 5.8 1.9 1153 chr3L 939770 intron Glut1 + chr3L 940346 intron Glut1 + chr3L 940923 intron Glut1 + chr3L_13_940001 chr3L_940001 RAL-787 696 chr3L 947733 947753 chr3L 947817 947837 7 84 2.0 2.5 2.2 2.2 104 chr3L 947733 intron Glut1 + chr3L 947785 intron Glut1 + chr3L 947837 intron Glut1 + chr3L_7_945001 chr3L_945001 RAL-787 697 chr3L 958317 958343 chr3L 958401 958426 8 84 5.0 3.5 4.2 1.5 109 chr3L 958317 intron Glut1 + chr3L 958372 intron Glut1 + chr3L 958426 intron Glut1 + chr3L_8_955001 chr3L_955001 RAL-787 698 chr3L 980418 980429 chr3L 980506 980517 4 88 2.5 4.5 3.5 0.9 99 chr3L 980418 intron Glut1 + chr3L 980468 intron Glut1 + chr3L 980517 intron Glut1 + chr3L_4_980001 chr3L_980001 RAL-787 699 chr3L 1021386 1021408 chr3L 1021453 1021488 7 78 3.0 2.0 2.5 2.0 102 chr3L 1021386 intron trio - chr3L 1021437 intron trio - chr3L 1021488 intron trio - chr3L_7_1020001 chr3L_1020001 RAL-787 700 chr3L 1028813 1028830 chr3L 1028899 1028913 4 85 0.5 1.0 0.8 2.2 100 chr3L 1028813 intron trio - chr3L 1028863 intron trio - chr3L 1028913 intron trio - chr3L_4_1025001 chr3L_1025001 RAL-787 701 chr3L 1031594 1031615 chr3L 1031651 1031665 5 63 2.0 3.0 2.5 1.4 71 chr3L 1031594 intron trio - chr3L 1031630 intron trio - chr3L 1031665 intron trio - chr3L_5_1030001 chr3L_1030001 RAL-787 702 chr3L 1040552 1040580 chr3L 1040636 1040663 13 84 1.5 1.5 1.5 5.2 111 chr3L 1040552 intron bab1 - chr3L 1040608 intron bab1 - chr3L 1040663 intron bab1 - chr3L_13_1040001 chr3L_1040001 RAL-787 703 chr3L 1154129 1154152 chr3L 1163279 1163299 roo 7 9150 3.0 2.5 2.8 1.8 9170 chr3L 1154129 intron bab2 - chr3L 1158714 intron bab2 - chr3L 1163299 intron bab2 - chr3L_7_1155001 chr3L_1155001 RAL-787 704 chr3L 1219599 1219623 chr3L 1227332 1227343 412 11 7731 4.0 4.5 4.2 2.1 7744 chr3L 1219599 intron mwh + chr3L 1223471 intron mwh + chr3L 1227343 intron mwh + chr3L_11_1220001 chr3L_1220001 RAL-787 705 chr3L 1260152 1260161 chr3L 1260232 1260241 8 80 3.0 3.0 3.0 2.0 89 chr3L 1260152 intron CG9134 + chr3L 1260196 intron CG9134 + chr3L 1260241 intron CG9134 + chr3L_8_1260001 chr3L_1260001 RAL-787 706 chr3L 1268158 1268172 chr3L 1268345 1268359 5 186 6.0 0.5 3.2 1.2 201 chr3L 1268158 intron CG9134 + chr3L 1268258 intron CG9134 + chr3L 1268359 intron CG9134 + chr3L_5_1265001 chr3L_1265001 RAL-787 707 chr3L 1310983 1310986 chr3L 1315851 1315873 12 4864 31.5 29.5 30.5 0.4 4890 chr3L 1310983 exon CG2469 + chr3L 1313428 intergenic CG9186 -,CG9153 + chr3L 1315873 exon CG9153 + chr3L_12_1310001 chr3L_1310001 RAL-787 708 chr3L 1347158 1347192 chr3L 1347243 1347255 11 80 4.5 3.0 3.8 2.3 97 chr3L 1347158 intron Ptp61F - chr3L 1347206 intron Ptp61F - chr3L 1347255 intron Ptp61F - chr3L_11_1345001 chr3L_1345001 RAL-787 709 chr3L 1358247 1358253 chr3L 1358884 1358889 6 637 11.5 1.0 6.2 0.8 642 chr3L 1358247 intron Ptp61F - chr3L 1358568 intron Ptp61F - chr3L 1358889 intron Ptp61F - chr3L_6_1355001 chr3L_1355001 RAL-787 710 chr3L 1359315 1359318 chr3L 1359394 1359398 4 79 3.0 5.5 4.2 0.8 83 chr3L 1359315 intron Ptp61F - chr3L 1359356 intron Ptp61F - chr3L 1359398 intron Ptp61F - chr3L_4_1355001 chr3L_1355001 RAL-787 711 chr3L 1374431 1374446 chr3L 1374507 1374523 4 77 10.0 5.0 7.5 0.5 92 chr3L 1374431 intron,intron Ptp61F -,ru + chr3L 1374477 intron,intron Ptp61F -,ru + chr3L 1374523 intron,intron Ptp61F -,ru + chr3L_4_1370001 chr3L_1370001 RAL-787 712 chr3L 1415784 1415806 chr3L 1415866 1415882 8 80 1.5 3.5 2.5 2.3 98 chr3L 1415784 intron Ptp61F - chr3L 1415833 intron Ptp61F - chr3L 1415882 intron Ptp61F - chr3L_8_1415001 chr3L_1415001 RAL-787 713 chr3L 1501996 1502013 chr3L 1502077 1502078 4 74 3.0 1.5 2.2 1.2 82 chr3L 1501996 intron pUf68 - chr3L 1502037 intron pUf68 - chr3L 1502078 intron pUf68 - chr3L_4_1500001 chr3L_1500001 RAL-787 714 chr3L 1506003 1506032 chr3L 1513598 1513629 17.6 8 7594 5.5 2.5 4.0 1.6 7626 chr3L 1506003 intron,intron Psa +,cue - chr3L 1509816 intron,intron Psa +,cue - chr3L 1513629 intron,intron Psa +,cue - chr3L_8_1505001 chr3L_1505001 RAL-787 715 chr3L 1590652 1590680 chr3L 1590736 1590768 8 84 2.0 2.5 2.2 2.5 116 chr3L 1590652 intron CG13917 + chr3L 1590710 intron CG13917 + chr3L 1590768 intron CG13917 + chr3L_8_1590001 chr3L_1590001 RAL-787 716 chr3L 1684032 1684045 chr3L 1684108 1684120 4 73 1.0 3.5 2.2 1.2 88 chr3L 1684032 intron CG7991 + chr3L 1684076 intron CG7991 + chr3L 1684120 intron CG7991 + chr3L_4_1680001 chr3L_1680001 RAL-787 717 chr3L 1728536 1728553 chr3L 1728621 1728638 8 85 2.5 6.0 4.2 1.5 102 chr3L 1728536 intron drpr - chr3L 1728587 intron drpr - chr3L 1728638 intron drpr - chr3L_8_1725001 chr3L_1725001 RAL-787 718 chr3L 1737916 1737945 chr3L 1738008 1738051 7 96 2.5 0.0 1.2 3.2 135 chr3L 1737916 5` UTR CG18173 - chr3L 1737984 5` UTR CG18173 - chr3L 1738051 5` UTR CG18173 - chr3L_7_1735001 chr3L_1735001 RAL-787 719 chr3L 1740862 1740875 chr3L 1741105 1741118 pogo 5 242 3.5 2.5 3.0 1.2 256 chr3L 1740862 intron Gk + chr3L 1740990 intron Gk + chr3L 1741118 intron Gk + chr3L_5_1740001 chr3L_1740001 RAL-787 720 chr3L 1963100 1963121 chr3L 1963180 1963201 9 80 6.0 5.0 5.5 1.4 101 chr3L 1963100 intron mv - chr3L 1963150 intron,5` UTR mv -,SCOT + chr3L 1963201 intron,5` UTR mv -,SCOT + chr3L_9_1960001 chr3L_1960001 RAL-787 721 chr3L 1991124 1991151 chr3L 1991201 1991229 10 77 2.5 2.0 2.2 3.1 105 chr3L 1991124 intergenic not near genes chr3L 1991176 intergenic not near genes chr3L 1991229 intergenic not near genes chr3L_10_1990001 chr3L_1990001 RAL-787 722 chr3L 2139205 2139225 chr3L 2139286 2139306 5 80 3.5 1.5 2.5 1.4 101 chr3L 2139205 intron zormin - chr3L 2139256 intron zormin - chr3L 2139306 intron zormin - chr3L_5_2135001 chr3L_2135001 RAL-787 723 chr3L 2168775 2168799 chr3L 2168864 2168890 6 90 4.5 2.0 3.2 1.4 115 chr3L 2168775 exon CG15879 - chr3L 2168832 intron CG15879 - chr3L 2168890 intron CG15879 - chr3L_6_2165001 chr3L_2165001 RAL-787 724 chr3L 2293392 2293423 chr3L 2293470 2293476 5 71 2.0 2.0 2.0 1.7 84 chr3L 2293392 intron MsR2 + chr3L 2293434 intron MsR2 + chr3L 2293476 intron MsR2 + chr3L_5_2290001 chr3L_2290001 RAL-787 725 chr3L 2293855 2293868 chr3L 2293933 2293938 6 77 1.5 0.0 0.8 3.3 83 chr3L 2293855 intron MsR2 + chr3L 2293896 intron MsR2 + chr3L 2293938 intron MsR2 + chr3L_6_2290001 chr3L_2290001 RAL-787 726 chr3L 2310541 2310569 chr3L 2310660 2310691 13 121 1.5 4.5 3.0 3.2 150 chr3L 2310541 intergenic not near genes chr3L 2310616 intergenic not near genes chr3L 2310691 intergenic not near genes chr3L_13_2310001 chr3L_2310001 RAL-787 727 chr3L 2313463 2313469 chr3L 2313565 2313571 4 102 0.0 1.0 0.5 2.7 108 chr3L 2313463 intergenic not near genes chr3L 2313517 intergenic not near genes chr3L 2313571 intergenic not near genes chr3L_4_2310001 chr3L_2310001 RAL-787 728 chr3L 2331580 2331616 chr3L 2331657 2331693 8 75 2.5 1.0 1.8 2.9 113 chr3L 2331580 intron MsR1 + chr3L 2331636 intron MsR1 + chr3L 2331693 intron MsR1 + chr3L_8_2330001 chr3L_2330001 RAL-787 729 chr3L 2348116 2348140 chr3L 2348200 2348226 10 83 3.5 2.5 3.0 2.5 110 chr3L 2348116 intergenic not near genes chr3L 2348171 intergenic not near genes chr3L 2348226 intergenic not near genes chr3L_10_2345001 chr3L_2345001 RAL-787 730 chr3L 2380343 2380376 chr3L 2380420 2380453 10 76 1.5 4.5 3.0 2.5 110 chr3L 2380343 intergenic not near genes chr3L 2380398 intergenic not near genes chr3L 2380453 intergenic not near genes chr3L_10_2380001 chr3L_2380001 RAL-787 731 chr3L 2419882 2419913 chr3L 2423020 2423051 8 3141 22.5 20.5 21.5 0.4 3169 chr3L 2419882 intron CG45186 + chr3L 2421466 intron CG45186 + chr3L 2423051 intron CG45186 + chr3L_8_2420001 chr3L_2420001 RAL-787 732 chr3L 2447523 2447533 chr3L 2456673 2456689 roo 7 9154 2.5 3.0 2.8 1.8 9166 chr3L 2447523 intron CG45186 + chr3L 2452106 intron CG45186 + chr3L 2456689 intron CG45186 + chr3L_7_2450001 chr3L_2450001 RAL-787 733 chr3L 2479291 2479309 chr3L 2479366 2479390 4 80 2.0 1.0 1.5 1.6 99 chr3L 2479291 intron CG45186 + chr3L 2479340 intron CG45186 + chr3L 2479390 intron CG45186 + chr3L_4_2475001 chr3L_2475001 RAL-787 734 chr3L 2528549 2528565 chr3L 2528634 2528650 9 84 1.0 6.0 3.5 2.0 101 chr3L 2528549 intron Spn - chr3L 2528600 intron Spn - chr3L 2528650 intron Spn - chr3L_9_2525001 chr3L_2525001 RAL-787 735 chr3L 2534615 2534643 chr3L 2534696 2534726 4 82 0.5 3.5 2.0 1.3 111 chr3L 2534615 intron Spn - chr3L 2534670 intron Spn - chr3L 2534726 exon Spn - chr3L_4_2530001 chr3L_2530001 RAL-787 736 chr3L 2561526 2561552 chr3L 2561603 2561626 9 76 2.5 1.5 2.0 3.0 100 chr3L 2561526 intron msn - chr3L 2561576 intron msn - chr3L 2561626 intron msn - chr3L_9_2560001 chr3L_2560001 RAL-787 737 chr3L 2581903 2581915 chr3L 2581995 2582009 7 93 1.0 2.0 1.5 2.8 106 chr3L 2581903 intron msn - chr3L 2581956 intron msn - chr3L 2582009 intron msn - chr3L_7_2580001 chr3L_2580001 RAL-787 738 chr3L 2665748 2665763 chr3L 2665836 2665851 7 88 2.0 6.0 4.0 1.4 103 chr3L 2665748 intron Fife - chr3L 2665800 intron Fife - chr3L 2665851 intron Fife - chr3L_7_2665001 chr3L_2665001 RAL-787 739 chr3L 2683947 2683977 chr3L 2684023 2684053 6 74 2.0 1.0 1.5 2.4 106 chr3L 2683947 intron Fife - chr3L 2684000 intron Fife - chr3L 2684053 intron Fife - chr3L_6_2680001 chr3L_2680001 RAL-787 740 chr3L 2700582 2700614 chr3L 2700674 2700704 8 91 4.0 4.0 4.0 1.6 122 chr3L 2700582 intron Fife - chr3L 2700643 intron Fife - chr3L 2700704 intron Fife - chr3L_8_2700001 chr3L_2700001 RAL-787 741 chr3L 2719544 2719557 chr3L 2719646 2719659 5 102 0.5 2.5 1.5 2.0 115 chr3L 2719544 3` UTR Mrtf - chr3L 2719602 3` UTR Mrtf - chr3L 2719659 3` UTR Mrtf - chr3L_5_2715001 chr3L_2715001 RAL-787 742 chr3L 2906059 2906096 chr3L 2906146 2906182 11 84 3.5 1.5 2.5 3.1 123 chr3L 2906059 intron Shab + chr3L 2906120 intron Shab + chr3L 2906182 intron Shab + chr3L_11_2905001 chr3L_2905001 RAL-787 743 chr3L 2911779 2911808 chr3L 2911873 2911900 8 93 1.0 2.5 1.8 2.9 121 chr3L 2911779 intron Shab + chr3L 2911840 intron Shab + chr3L 2911900 intron Shab + chr3L_8_2910001 chr3L_2910001 RAL-787 744 chr3L 2927845 2927871 chr3L 2936116 2936148 Tirant 12 8276 1.5 3.0 2.2 3.8 8303 chr3L 2927845 intron Shab + chr3L 2931996 intron Shab + chr3L 2936148 intron Shab + chr3L_12_2930001 chr3L_2930001 RAL-787 745 chr3L 3027614 3027629 chr3L 3028614 3028630 5 1001 2.0 8.0 5.0 0.8 1016 chr3L 3027614 intergenic not near genes chr3L 3028122 intergenic not near genes chr3L 3028630 intergenic not near genes chr3L_5_3025001 chr3L_3025001 RAL-787 746 chr3L 3178731 3178759 chr3L 3178814 3178842 10 83 3.5 0.0 1.8 3.6 111 chr3L 3178731 intergenic CG14964 -,Girdin + chr3L 3178786 intergenic Girdin +,CG14964 - chr3L 3178842 intergenic Girdin +,CG14964 - chr3L_10_3175001 chr3L_3175001 RAL-787 747 chr3L 3259621 3259833 chr3L 3259716 3259933 15 95 0.0 2.5 1.2 6.8 312 chr3L 3259621 intron ckd + chr3L 3259777 intron ckd + chr3L 3259933 intron ckd + chr3L_15_3255001 chr3L_3255001 RAL-787 748 chr3L 3475078 3475113 chr3L 3475522 3475557 jockey 8 444 0.0 2.5 1.2 3.6 479 chr3L 3475078 intron CG42324 + chr3L 3475318 intron CG42324 + chr3L 3475557 intron CG42324 + chr3L_8_3475001 chr3L_3475001 RAL-787 749 chr3L 3494196 3494202 chr3L 3494273 3494279 4 77 4.0 3.5 3.8 0.8 83 chr3L 3494196 intron CG42324 + chr3L 3494238 intron CG42324 + chr3L 3494279 intron CG42324 + chr3L_4_3490001 chr3L_3490001 RAL-787 750 chr3L 3565939 3565970 chr3L 3566015 3566044 4 74 3.5 4.0 3.8 0.8 105 chr3L 3565939 intron Eip63E + chr3L 3565992 intron Eip63E + chr3L 3566044 intron Eip63E + chr3L_4_3565001 chr3L_3565001 RAL-787 751 chr3L 3601296 3601324 chr3L 3606607 3606635 copia 8 5310 2.5 0.0 1.2 3.6 5339 chr3L 3601296 intron Eip63E + chr3L 3603966 intron Eip63E + chr3L 3606635 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-787 752 chr3L 3726645 3726670 chr3L 3726723 3726752 7 80 0.0 3.0 1.5 2.8 107 chr3L 3726645 intron CG32264 - chr3L 3726698 intron CG32264 - chr3L 3726752 intron CG32264 - chr3L_7_3725001 chr3L_3725001 RAL-787 753 chr3L 3742611 3742636 chr3L 3743615 3743640 8 1005 28.0 5.5 16.8 0.4 1029 chr3L 3742611 intron CG32264 - chr3L 3743126 intron CG32264 - chr3L 3743640 intron CG32264 - chr3L_8_3740001 chr3L_3740001 RAL-787 754 chr3L 3815051 3815068 chr3L 3815132 3815149 9 81 7.5 0.5 4.0 1.8 98 chr3L 3815051 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815100 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815149 intron,intron Scsalpha +,CR43932 - chr3L_9_3815001 chr3L_3815001 RAL-787 755 chr3L 4015734 4015759 chr3L 4015817 4015842 6 83 5.5 2.0 3.8 1.2 108 chr3L 4015734 intergenic not near genes chr3L 4015788 intergenic not near genes chr3L 4015842 intergenic not near genes chr3L_6_4015001 chr3L_4015001 RAL-787 756 chr3L 4058842 4058869 chr3L 4058922 4058949 7 80 1.5 3.0 2.2 2.2 107 chr3L 4058842 3` UTR CG1136 + chr3L 4058896 3` UTR CG1136 + chr3L 4058949 3` UTR CG1136 + chr3L_7_4055001 chr3L_4055001 RAL-787 757 chr3L 4235751 4235762 chr3L 4235838 4235839 5 85 2.5 2.5 2.5 1.4 88 chr3L 4235751 intron ImpL2 - chr3L 4235795 intron ImpL2 - chr3L 4235839 intron ImpL2 - chr3L_5_4235001 chr3L_4235001 RAL-787 758 chr3L 4328739 4328763 chr3L 4336237 4336261 412 7 7498 2.5 4.5 3.5 1.6 7522 chr3L 4328739 intron Cip4 - chr3L 4332500 intron Cip4 - chr3L 4336261 intron Cip4 - chr3L_7_4330001 chr3L_4330001 RAL-787 759 chr3L 4347836 4347860 chr3L 4347922 4347946 10 85 2.5 4.5 3.5 2.2 110 chr3L 4347836 intron Cip4 - chr3L 4347891 intron Cip4 - chr3L 4347946 intron Cip4 - chr3L_10_4345001 chr3L_4345001 RAL-787 760 chr3L 4364201 4364223 chr3L 4364290 4364310 5 89 0.5 1.5 1.0 2.5 109 chr3L 4364201 intergenic Cip4 -,mRpS6 + chr3L 4364256 intergenic Cip4 -,mRpS6 + chr3L 4364310 intergenic Cip4 -,mRpS6 + chr3L_5_4360001 chr3L_4360001 RAL-787 761 chr3L 4423494 4423503 chr3L 4423573 4423597 5 91 1.0 2.5 1.8 1.8 103 chr3L 4423494 intron CG15020 + chr3L 4423546 intron CG15020 + chr3L 4423597 intron CG15020 + chr3L_5_4420001 chr3L_4420001 RAL-787 762 chr3L 4580302 4580337 chr3L 4580388 4580391 12 83 1.5 2.0 1.8 4.3 89 chr3L 4580302 intron CG42540 + chr3L 4580346 intron CG42540 + chr3L 4580391 intron CG42540 + chr3L_12_4580001 chr3L_4580001 RAL-787 763 chr3L 4676037 4676054 chr3L 4676118 4676135 4 81 2.0 0.0 1.0 2.0 98 chr3L 4676037 intron axo - chr3L 4676086 intron axo - chr3L 4676135 intron axo - chr3L_4_4675001 chr3L_4675001 RAL-787 764 chr3L 4748709 4748729 chr3L 4748800 4748820 6 91 3.5 4.0 3.8 1.2 111 chr3L 4748709 intron RhoGEF64C + chr3L 4748764 intron RhoGEF64C + chr3L 4748820 intron RhoGEF64C + chr3L_6_4745001 chr3L_4745001 RAL-787 765 chr3L 4784962 4784987 chr3L 4785171 4785196 4 208 1.5 1.5 1.5 1.6 234 chr3L 4784962 intron RhoGEF64C + chr3L 4785079 intron RhoGEF64C + chr3L 4785196 intron RhoGEF64C + chr3L_4_4785001 chr3L_4785001 RAL-787 766 chr3L 4901130 4901159 chr3L 4907320 4907343 diver 5 6184 4.5 0.5 2.5 1.4 6213 chr3L 4901130 intergenic CG13704 + chr3L 4904236 intergenic not near genes chr3L 4907343 intergenic not near genes chr3L_5_4900001 chr3L_4900001 RAL-787 767 chr3L 4919397 4919426 chr3L 4923247 4923274 8 3849 17.5 21.5 19.5 0.4 3877 chr3L 4919397 3` UTR Rh50 + chr3L 4921336 intergenic not near genes chr3L 4923274 intergenic not near genes chr3L_8_4920001 chr3L_4920001 RAL-787 768 chr3L 4986050 4986062 chr3L 4986139 4986151 5 89 0.0 3.0 1.5 2.0 101 chr3L 4986050 intron Con - chr3L 4986100 intron Con - chr3L 4986151 intron Con - chr3L_5_4985001 chr3L_4985001 RAL-787 769 chr3L 5045458 5045485 chr3L 5050238 5050266 Doc 5 4781 3.0 4.0 3.5 1.1 4808 chr3L 5045458 intron Con - chr3L 5047862 intron Con - chr3L 5050266 intron Con - chr3L_5_5045001 chr3L_5045001 RAL-787 770 chr3L 5054950 5054965 chr3L 5055026 5055045 4 79 2.0 4.5 3.2 1.0 95 chr3L 5054950 intron Con - chr3L 5054998 intron Con - chr3L 5055045 intron Con - chr3L_4_5050001 chr3L_5050001 RAL-787 771 chr3L 5104484 5104505 chr3L 5124618 5124636 4 20133 2.0 1.5 1.8 1.4 20152 chr3L 5104484 intergenic not near genes chr3L 5114560 intergenic not near genes chr3L 5124636 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-787 772 chr3L 5233870 5233886 chr3L 5233952 5233969 5 80 2.5 5.0 3.8 1.0 99 chr3L 5233870 intron shep - chr3L 5233920 intron shep - chr3L 5233969 intron shep - chr3L_5_5230001 chr3L_5230001 RAL-787 773 chr3L 5327465 5327470 chr3L 5327550 5327555 4 85 3.0 4.5 3.8 0.8 90 chr3L 5327465 intergenic not near genes chr3L 5327510 intergenic not near genes chr3L 5327555 intergenic not near genes chr3L_4_5325001 chr3L_5325001 RAL-787 774 chr3L 5396491 5396498 chr3L 5396578 5396585 4 87 0.0 1.0 0.5 2.7 94 chr3L 5396491 intergenic not near genes chr3L 5396538 intergenic not near genes chr3L 5396585 intergenic not near genes chr3L_4_5395001 chr3L_5395001 RAL-787 775 chr3L 5482942 5483088 chr3L 5483151 5483207 11 151 1.0 0.5 0.8 6.1 265 chr3L 5482942 exon CG4835 + chr3L 5483074 exon CG4835 + chr3L 5483207 exon CG4835 + chr3L_11_5480001 chr3L_5480001 RAL-787 776 chr3L 5504559 5504569 chr3L 5504637 5504647 4 78 2.5 0.0 1.2 1.8 88 chr3L 5504559 intron CG34342 - chr3L 5504603 intron CG34342 - chr3L 5504647 intron CG34342 - chr3L_4_5500001 chr3L_5500001 RAL-787 777 chr3L 5667628 5667641 chr3L 5667708 5667720 4 78 3.5 0.5 2.0 1.3 92 chr3L 5667628 intron sif + chr3L 5667674 intron sif + chr3L 5667720 intron sif + chr3L_4_5665001 chr3L_5665001 RAL-787 778 chr3L 5849266 5849291 chr3L 5849351 5849358 7 80 1.5 4.5 3.0 1.8 92 chr3L 5849266 intergenic not near genes chr3L 5849312 intergenic not near genes chr3L 5849358 intergenic not near genes chr3L_7_5845001 chr3L_5845001 RAL-787 779 chr3L 5908085 5908107 chr3L 5908165 5908187 5 80 1.5 0.5 1.0 2.5 102 chr3L 5908085 intron CG13288 + chr3L 5908136 intron CG13288 + chr3L 5908187 intron CG13288 + chr3L_5_5905001 chr3L_5905001 RAL-787 780 chr3L 5926333 5926349 chr3L 5926502 5926513 BS 6 176 4.0 3.0 3.5 1.3 180 chr3L 5926333 intron Vap-33B + chr3L 5926423 intron Vap-33B + chr3L 5926513 intron Vap-33B + chr3L_6_5925001 chr3L_5925001 RAL-787 781 chr3L 5992598 5992620 chr3L 5992700 5992722 8 102 3.5 1.0 2.2 2.5 124 chr3L 5992598 intergenic not near genes chr3L 5992660 intergenic not near genes chr3L 5992722 intergenic not near genes chr3L_8_5990001 chr3L_5990001 RAL-787 782 chr3L 6001679 6001697 chr3L 6004379 6004397 jockey 5 2700 4.5 1.0 2.8 1.3 2718 chr3L 6001679 intron PVRAP + chr3L 6003038 intron PVRAP + chr3L 6004397 intron PVRAP + chr3L_5_6000001 chr3L_6000001 RAL-787 783 chr3L 6040372 6040393 chr3L 6042728 6042749 Doc 5 2356 1.5 3.0 2.2 1.6 2377 chr3L 6040372 intergenic Jon65Aiv + chr3L 6041560 intergenic not near genes chr3L 6042749 intergenic not near genes chr3L_5_6040001 chr3L_6040001 RAL-787 784 chr3L 6159940 6159949 chr3L 6160020 6160029 4 80 2.5 0.0 1.2 1.8 89 chr3L 6159940 intergenic not near genes chr3L 6159984 intergenic not near genes chr3L 6160029 intergenic not near genes chr3L_4_6155001 chr3L_6155001 RAL-787 785 chr3L 6220917 6220948 chr3L 6230069 6230096 roo 9 9151 5.5 8.0 6.8 1.2 9179 chr3L 6220917 5` UTR pncr008:3L + chr3L 6225506 intergenic not near genes chr3L 6230096 intergenic not near genes chr3L_9_6225001 chr3L_6225001 RAL-787 786 chr3L 6259395 6259398 chr3L 6261200 6261203 4 1805 15.0 9.5 12.2 0.3 1808 chr3L 6259395 3` UTR ImpL3 - chr3L 6260299 exon ImpL3 - chr3L 6261203 intron ImpL3 - chr3L_4_6260001 chr3L_6260001 RAL-787 787 chr3L 6259248 6259278 chr3L 6261297 6261323 7 2048 14.0 19.5 16.8 0.4 2075 chr3L 6259248 3` UTR ImpL3 - chr3L 6260286 exon ImpL3 - chr3L 6261323 intron ImpL3 - chr3L_7_6260001 chr3L_6260001 RAL-787 788 chr3L 6278219 6278224 chr3L 6278295 6278300 5 76 7.5 0.0 3.8 1.0 81 chr3L 6278219 intergenic not near genes chr3L 6278260 intergenic not near genes chr3L 6278300 intergenic not near genes chr3L_5_6275001 chr3L_6275001 RAL-787 789 chr3L 6346606 6346626 chr3L 6346705 6346724 8 98 3.0 3.5 3.2 1.9 118 chr3L 6346606 intron CG13300 - chr3L 6346665 intron CG13300 - chr3L 6346724 intron CG13300 - chr3L_8_6345001 chr3L_6345001 RAL-787 790 chr3L 6347968 6347993 chr3L 6348224 6348239 5 254 0.5 2.5 1.5 2.0 271 chr3L 6347968 intron CG13300 - chr3L 6348104 intron CG13300 - chr3L 6348239 intron CG13300 - chr3L_5_6345001 chr3L_6345001 RAL-787 791 chr3L 6358623 6358649 chr3L 6358700 6358726 5 77 2.0 4.0 3.0 1.2 103 chr3L 6358623 intergenic not near genes chr3L 6358674 intergenic not near genes chr3L 6358726 intergenic not near genes chr3L_5_6355001 chr3L_6355001 RAL-787 792 chr3L 6466022 6466055 chr3L 6466107 6466140 9 84 0.5 0.5 0.5 6.0 118 chr3L 6466022 intron CG42747 + chr3L 6466081 intron CG42747 + chr3L 6466140 intron CG42747 + chr3L_9_6465001 chr3L_6465001 RAL-787 793 chr3L 6499050 6499083 chr3L 6499126 6499135 7 72 6.0 6.5 6.2 1.0 85 chr3L 6499050 intron sfl + chr3L 6499092 intron sfl + chr3L 6499135 intron sfl + chr3L_7_6495001 chr3L_6495001 RAL-787 794 chr3L 6668970 6668999 chr3L 6669051 6669079 7 81 0.0 0.0 0.0 7.0 109 chr3L 6668970 intergenic not near genes chr3L 6669024 intergenic not near genes chr3L 6669079 intergenic not near genes chr3L_7_6665001 chr3L_6665001 RAL-787 795 chr3L 6855937 6855950 chr3L 6860719 6860733 Doc 5 4783 5.0 1.0 3.0 1.2 4796 chr3L 6855937 intergenic not near genes chr3L 6858335 intergenic not near genes chr3L 6860733 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-787 796 chr3L 6887518 6887536 chr3L 6895010 6895025 roo 4 7491 2.5 2.0 2.2 1.2 7507 chr3L 6887518 intergenic not near genes chr3L 6891272 intergenic not near genes chr3L 6895025 intergenic not near genes chr3L_4_6890001 chr3L_6890001 RAL-787 797 chr3L 6900902 6901185 chr3L 6900978 6901272 4 78 3.5 2.0 2.8 1.1 370 chr3L 6900902 intergenic not near genes chr3L 6901087 intergenic not near genes chr3L 6901272 intergenic not near genes chr3L_4_6900001 chr3L_6900001 RAL-787 798 chr3L 6908014 6908025 chr3L 6908099 6908109 4 84 7.0 0.0 3.5 0.9 95 chr3L 6908014 intergenic not near genes chr3L 6908062 intergenic not near genes chr3L 6908109 intergenic not near genes chr3L_4_6905001 chr3L_6905001 RAL-787 799 chr3L 6974506 6974523 chr3L 6974607 6974624 5 101 0.0 6.5 3.2 1.2 118 chr3L 6974506 intron Galphai - chr3L 6974565 intron Galphai - chr3L 6974624 intron Galphai - chr3L_5_6970001 chr3L_6970001 RAL-787 800 chr3L 6986366 6986396 chr3L 6986583 6986613 9 215 1.0 5.0 3.0 2.2 247 chr3L 6986366 intergenic not near genes chr3L 6986490 intergenic not near genes chr3L 6986613 intergenic not near genes chr3L_9_6985001 chr3L_6985001 RAL-787 801 chr3L 7090023 7090057 chr3L 7090104 7090138 10 81 1.0 4.0 2.5 2.9 115 chr3L 7090023 intergenic not near genes chr3L 7090080 intergenic not near genes chr3L 7090138 intergenic not near genes chr3L_10_7090001 chr3L_7090001 RAL-787 802 chr3L 7112594 7112614 chr3L 7112681 7112697 6 86 1.0 3.0 2.0 2.0 103 chr3L 7112594 intron form3 + chr3L 7112646 intron form3 + chr3L 7112697 intron form3 + chr3L_6_7110001 chr3L_7110001 RAL-787 803 chr3L 7202094 7202101 chr3L 7202232 7202241 5 139 4.0 4.5 4.2 1.0 147 chr3L 7202094 intergenic not near genes chr3L 7202168 intergenic not near genes chr3L 7202241 intergenic not near genes chr3L_5_7200001 chr3L_7200001 RAL-787 804 chr3L 7244932 7244958 chr3L 7245024 7245045 10 85 6.5 2.0 4.2 1.9 113 chr3L 7244932 exon mei-P22 + chr3L 7244988 exon mei-P22 + chr3L 7245045 exon mei-P22 + chr3L_10_7240001 chr3L_7240001 RAL-787 805 chr3L 7377314 7377343 chr3L 7380419 7380448 297 4 3101 0.5 2.5 1.5 1.6 3134 chr3L 7377314 intron SMSr - chr3L 7378881 intron SMSr - chr3L 7380448 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-787 806 chr3L 7436136 7436147 chr3L 7436213 7436213 4 75 3.0 3.0 3.0 1.0 77 chr3L 7436136 intron CG42458 + chr3L 7436174 intron CG42458 + chr3L 7436213 intron CG42458 + chr3L_4_7435001 chr3L_7435001 RAL-787 807 chr3L 7460373 7460405 chr3L 7460457 7460489 5 84 1.5 2.5 2.0 1.7 116 chr3L 7460373 intergenic not near genes chr3L 7460431 intergenic not near genes chr3L 7460489 intergenic not near genes chr3L_5_7460001 chr3L_7460001 RAL-787 808 chr3L 7462960 7462991 chr3L 7463037 7463070 7 76 0.0 1.5 0.8 3.9 110 chr3L 7462960 intergenic not near genes chr3L 7463015 intergenic not near genes chr3L 7463070 intergenic not near genes chr3L_7_7460001 chr3L_7460001 RAL-787 809 chr3L 7479748 7479781 chr3L 7479824 7479855 12 72 4.5 1.5 3.0 3.0 107 chr3L 7479748 intergenic not near genes chr3L 7479802 intergenic not near genes chr3L 7479855 intergenic not near genes chr3L_12_7475001 chr3L_7475001 RAL-787 810 chr3L 7498765 7498778 chr3L 7503542 7503555 F-element 4 4777 3.0 1.5 2.2 1.2 4790 chr3L 7498765 5` UTR CG8539 - chr3L 7501160 intergenic not near genes chr3L 7503555 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-787 811 chr3L 7574694 7574860 chr3L 7574779 7574937 6 81 0.0 0.0 0.0 6.0 243 chr3L 7574694 intergenic not near genes chr3L 7574816 intergenic not near genes chr3L 7574937 intergenic not near genes chr3L_6_7570001 chr3L_7570001 RAL-787 812 chr3L 7665864 7665894 chr3L 7665983 7666014 13 119 1.5 3.5 2.5 3.7 150 chr3L 7665864 intron,intron,exon CG32373 +,Ank2 -,CG44195 - chr3L 7665939 intron,intron,5` UTR CG32373 +,Ank2 -,CG44195 - chr3L 7666014 intron,intron,intron CG32373 +,Ank2 -,CG44195 - chr3L_13_7665001 chr3L_7665001 RAL-787 813 chr3L 7793711 7793728 chr3L 7800763 7800780 297 4 7052 4.0 4.0 4.0 0.8 7069 chr3L 7793711 intron CG32369 - chr3L 7797246 intron CG32369 - chr3L 7800780 intron CG32369 - chr3L_4_7795001 chr3L_7795001 RAL-787 814 chr3L 7869199 7869228 chr3L 7869281 7869310 9 82 2.5 1.0 1.8 3.2 111 chr3L 7869199 5` UTR CG32365 + chr3L 7869254 5` UTR CG32365 + chr3L 7869310 5` UTR CG32365 + chr3L_9_7865001 chr3L_7865001 RAL-787 815 chr3L 7884446 7884467 chr3L 7884525 7884547 4 80 0.5 3.0 1.8 1.4 101 chr3L 7884446 intron CG32365 + chr3L 7884496 intron CG32365 + chr3L 7884547 intron CG32365 + chr3L_4_7880001 chr3L_7880001 RAL-787 816 chr3L 7886517 7886541 chr3L 7889035 7889059 Stalker4 5 2518 1.5 1.0 1.2 2.3 2542 chr3L 7886517 intron CG32365 + chr3L 7887788 intron CG32365 + chr3L 7889059 intron CG32365 + chr3L_5_7885001 chr3L_7885001 RAL-787 817 chr3L 7936890 7936900 chr3L 7936967 7937001 5 78 3.0 2.5 2.8 1.3 111 chr3L 7936890 3` UTR Srp9 + chr3L 7936946 3` UTR Srp9 + chr3L 7937001 3` UTR Srp9 + chr3L_5_7935001 chr3L_7935001 RAL-787 818 chr3L 7985368 7985397 chr3L 7987696 7987725 NOF 12 2328 3.0 5.5 4.2 2.3 2357 chr3L 7985368 intron nmo + chr3L 7986546 intron nmo + chr3L 7987725 intron nmo + chr3L_12_7985001 chr3L_7985001 RAL-787 819 chr3L 8015933 8015965 chr3L 8016013 8016045 9 80 1.5 0.5 1.0 4.5 112 chr3L 8015933 intron nmo + chr3L 8015989 intron nmo + chr3L 8016045 intron nmo + chr3L_9_8015001 chr3L_8015001 RAL-787 820 chr3L 8019703 8019730 chr3L 8024113 8024142 NOF 6 4412 2.0 1.0 1.5 2.4 4439 chr3L 8019703 intron nmo + chr3L 8021922 intron nmo + chr3L 8024142 intron nmo + chr3L_6_8020001 chr3L_8020001 RAL-787 821 chr3L 8108618 8108644 chr3L 8108726 8108752 9 104 2.5 2.0 2.2 2.8 134 chr3L 8108618 intron Ect4 + chr3L 8108685 exon Ect4 + chr3L 8108752 3` UTR Ect4 + chr3L_9_8105001 chr3L_8105001 RAL-787 822 chr3L 8208126 8208157 chr3L 8208258 8208279 11 129 2.5 2.5 2.5 3.1 153 chr3L 8208126 intergenic not near genes chr3L 8208202 intergenic not near genes chr3L 8208279 intergenic not near genes chr3L_11_8205001 chr3L_8205001 RAL-787 823 chr3L 8220310 8220334 chr3L 8220599 8220621 4 283 2.0 2.0 2.0 1.3 311 chr3L 8220310 intergenic not near genes chr3L 8220466 intergenic not near genes chr3L 8220621 intergenic not near genes chr3L_4_8220001 chr3L_8220001 RAL-787 824 chr3L 8273056 8273085 chr3L 8273155 8273184 4 99 5.5 2.0 3.8 0.8 128 chr3L 8273056 intron Dscam4 + chr3L 8273120 intron Dscam4 + chr3L 8273184 exon Dscam4 + chr3L_4_8270001 chr3L_8270001 RAL-787 825 chr3L 8295791 8295828 chr3L 8295949 8295986 12 157 0.5 3.5 2.0 4.0 195 chr3L 8295791 intergenic CG7201 - chr3L 8295888 intergenic not near genes chr3L 8295986 intergenic not near genes chr3L_12_8295001 chr3L_8295001 RAL-787 826 chr3L 8491644 8491674 chr3L 8491726 8491756 6 81 2.0 2.5 2.2 1.9 112 chr3L 8491644 intron CG43163 - chr3L 8491700 intron CG43163 - chr3L 8491756 intron CG43163 - chr3L_6_8490001 chr3L_8490001 RAL-787 827 chr3L 8791274 8791290 chr3L 8796694 8796710 I-element 6 5419 3.0 0.0 1.5 2.4 5436 chr3L 8791274 exon Fhos + chr3L 8793992 intron Fhos + chr3L 8796710 intron Fhos + chr3L_6_8790001 chr3L_8790001 RAL-787 828 chr3L 8839730 8839743 chr3L 8839810 8839823 4 80 1.5 0.5 1.0 2.0 93 chr3L 8839730 intron dally + chr3L 8839776 intron dally + chr3L 8839823 intron dally + chr3L_4_8835001 chr3L_8835001 RAL-787 829 chr3L 8924431 8924454 chr3L 8924514 8924536 5 80 2.0 2.5 2.2 1.6 105 chr3L 8924431 intron Tsp66E + chr3L 8924484 intron Tsp66E + chr3L 8924536 intron Tsp66E + chr3L_5_8920001 chr3L_8920001 RAL-787 830 chr3L 8949405 8949499 chr3L 8949499 8949580 5 89 0.0 0.0 0.0 5.0 175 chr3L 8949405 intron,intron CG43783 -,orb2 - chr3L 8949492 intron,intron CG43783 -,orb2 - chr3L 8949580 intron,intron CG43783 -,orb2 - chr3L_5_8945001 chr3L_8945001 RAL-787 831 chr3L 9028059 9028086 chr3L 9028162 9028189 6 99 2.0 4.5 3.2 1.4 130 chr3L 9028059 intergenic not near genes chr3L 9028124 intergenic not near genes chr3L 9028189 intergenic not near genes chr3L_6_9025001 chr3L_9025001 RAL-787 832 chr3L 9076938 9076959 chr3L 9084497 9084519 412 8 7558 4.0 4.5 4.2 1.5 7581 chr3L 9076938 exon Tequila + chr3L 9080728 intron Tequila + chr3L 9084519 exon Tequila + chr3L_8_9080001 chr3L_9080001 RAL-787 833 chr3L 9109752 9109776 chr3L 9110355 9110381 7 605 2.0 3.0 2.5 2.0 629 chr3L 9109752 intron bol - chr3L 9110066 intron bol - chr3L 9110381 intron bol - chr3L_7_9110001 chr3L_9110001 RAL-787 834 chr3L 9130557 9130578 chr3L 9134318 9134339 412 9 3760 4.5 2.5 3.5 2.0 3782 chr3L 9130557 intergenic bol - chr3L 9132448 intergenic not near genes chr3L 9134339 intergenic Dhpr + chr3L_9_9130001 chr3L_9130001 RAL-787 835 chr3L 9164702 9164716 chr3L 9166162 9166183 hobo 4 1465 4.0 1.0 2.5 1.1 1481 chr3L 9164702 intron Rdl - chr3L 9165442 intron Rdl - chr3L 9166183 intron Rdl - chr3L_4_9165001 chr3L_9165001 RAL-787 836 chr3L 9219246 9219269 chr3L 9219916 9219924 jockey 10 666 5.0 2.5 3.8 2.1 678 chr3L 9219246 intergenic not near genes chr3L 9219585 intergenic not near genes chr3L 9219924 intergenic not near genes chr3L_10_9215001 chr3L_9215001 RAL-787 837 chr3L 9220215 9220239 chr3L 9220297 9220319 8 82 2.5 1.5 2.0 2.7 104 chr3L 9220215 intergenic not near genes chr3L 9220267 intergenic not near genes chr3L 9220319 intergenic not near genes chr3L_8_9220001 chr3L_9220001 RAL-787 838 chr3L 9270615 9270649 chr3L 9278370 9278395 roo 8 7752 1.5 2.5 2.0 2.7 7780 chr3L 9270615 intron GluRIB + chr3L 9274505 intron GluRIB + chr3L 9278395 exon GluRIB + chr3L_8_9270001 chr3L_9270001 RAL-787 839 chr3L 9321033 9321055 chr3L 9321116 9321136 4 82 1.0 3.0 2.0 1.3 103 chr3L 9321033 intergenic not near genes chr3L 9321084 intergenic not near genes chr3L 9321136 intergenic not near genes chr3L_4_9320001 chr3L_9320001 RAL-787 840 chr3L 9419903 9419931 chr3L 9419981 9420007 6 72 2.0 4.0 3.0 1.5 104 chr3L 9419903 intron CG3967 - chr3L 9419955 intron CG3967 - chr3L 9420007 intron CG3967 - chr3L_6_9415001 chr3L_9415001 RAL-787 841 chr3L 9443521 9443538 chr3L 9445310 9445327 S-element 5 1790 3.0 0.0 1.5 2.0 1806 chr3L 9443521 intron CG33926 + chr3L 9444424 intron CG33926 + chr3L 9445327 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-787 842 chr3L 9510915 9510951 chr3L 9511008 9511030 4 80 0.0 0.5 0.2 3.3 115 chr3L 9510915 intron RpS9 - chr3L 9510972 intron RpS9 - chr3L 9511030 intron RpS9 - chr3L_4_9510001 chr3L_9510001 RAL-787 843 chr3L 9513446 9513472 chr3L 9513533 9513539 6 80 0.5 0.0 0.2 5.0 93 chr3L 9513446 intergenic CG33702 - chr3L 9513492 intergenic CG33702 - chr3L 9513539 intergenic CG33702 - chr3L_6_9510001 chr3L_9510001 RAL-787 844 chr3L 9575912 9575944 chr3L 9580989 9580998 jockey 10 5074 5.0 2.5 3.8 2.1 5086 chr3L 9575912 intron CG42673 + chr3L 9578455 intron CG42673 + chr3L 9580998 intron CG42673 + chr3L_10_9575001 chr3L_9575001 RAL-787 845 chr3L 9639039 9639062 chr3L 9639124 9639146 5 85 0.0 4.0 2.0 1.7 107 chr3L 9639039 intron fry - chr3L 9639092 intron fry - chr3L 9639146 intron fry - chr3L_5_9635001 chr3L_9635001 RAL-787 846 chr3L 9732430 9732445 chr3L 9732508 9732523 4 78 4.5 1.0 2.8 1.1 93 chr3L 9732430 exon CG6749 - chr3L 9732476 intron CG6749 - chr3L 9732523 intron CG6749 - chr3L_4_9730001 chr3L_9730001 RAL-787 847 chr3L 9775385 9775395 chr3L 9775745 9775755 4 360 0.0 6.5 3.2 1.0 370 chr3L 9775385 intron CG8177 + chr3L 9775570 intron CG8177 + chr3L 9775755 intron CG8177 + chr3L_4_9775001 chr3L_9775001 RAL-787 848 chr3L 9918879 9918912 chr3L 9918974 9919005 10 94 3.0 4.0 3.5 2.2 126 chr3L 9918879 intron CG34356 + chr3L 9918942 intron CG34356 + chr3L 9919005 intron CG34356 + chr3L_10_9915001 chr3L_9915001 RAL-787 849 chr3L 9940155 9940165 chr3L 9940231 9940242 4 77 4.5 4.5 4.5 0.7 87 chr3L 9940155 intron CG34356 + chr3L 9940198 intron CG34356 + chr3L 9940242 intron CG34356 + chr3L_4_9940001 chr3L_9940001 RAL-787 850 chr3L 10014283 10014308 chr3L 10014430 10014456 6 147 0.5 0.5 0.5 4.0 173 chr3L 10014283 intron dpr6 + chr3L 10014370 intron dpr6 + chr3L 10014456 intron dpr6 + chr3L_6_10010001 chr3L_10010001 RAL-787 851 chr3L 10049541 10049575 chr3L 10049621 10049640 12 77 1.0 1.5 1.2 5.5 99 chr3L 10049541 intron dpr6 + chr3L 10049590 intron dpr6 + chr3L 10049640 intron dpr6 + chr3L_12_10045001 chr3L_10045001 RAL-787 852 chr3L 10139108 10139126 chr3L 10139189 10139210 7 83 2.5 4.5 3.5 1.6 102 chr3L 10139108 3` UTR dpr6 + chr3L 10139159 3` UTR dpr6 + chr3L 10139210 3` UTR dpr6 + chr3L_7_10135001 chr3L_10135001 RAL-787 853 chr3L 10282039 10282052 chr3L 10282128 10282134 4 88 2.5 1.5 2.0 1.3 95 chr3L 10282039 intergenic not near genes chr3L 10282086 intergenic not near genes chr3L 10282134 intergenic not near genes chr3L_4_10280001 chr3L_10280001 RAL-787 854 chr3L 10298675 10298701 chr3L 10298762 10298788 6 87 0.5 0.5 0.5 4.0 113 chr3L 10298675 intergenic not near genes chr3L 10298732 intergenic not near genes chr3L 10298788 intergenic not near genes chr3L_6_10295001 chr3L_10295001 RAL-787 855 chr3L 10308737 10308766 chr3L 10308814 10308843 7 76 3.5 2.0 2.8 1.8 106 chr3L 10308737 intergenic not near genes chr3L 10308790 intergenic not near genes chr3L 10308843 intergenic not near genes chr3L_7_10305001 chr3L_10305001 RAL-787 856 chr3L 10310353 10310378 chr3L 10310450 10310474 12 96 1.5 2.0 1.8 4.3 121 chr3L 10310353 intergenic not near genes chr3L 10310414 intergenic not near genes chr3L 10310474 intergenic not near genes chr3L_12_10310001 chr3L_10310001 RAL-787 857 chr3L 10386388 10386409 chr3L 10386465 10386479 8 73 3.0 2.5 2.8 2.1 91 chr3L 10386388 intergenic CR45245 + chr3L 10386434 intergenic CR45245 + chr3L 10386479 5` UTR CR45245 + chr3L_8_10385001 chr3L_10385001 RAL-787 858 chr3L 10414971 10414975 chr3L 10417313 10417347 Doc 5 2361 3.0 2.0 2.5 1.4 2376 chr3L 10414971 intergenic CG12362 + chr3L 10416159 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_5_10415001 chr3L_10415001 RAL-787 859 chr3L 10430077 10430103 chr3L 10430154 10430180 7 77 1.0 0.0 0.5 4.7 103 chr3L 10430077 3` UTR Ir67b - chr3L 10430128 3` UTR Ir67b - chr3L 10430180 3` UTR Ir67b - chr3L_7_10430001 chr3L_10430001 RAL-787 860 chr3L 10600457 10600463 chr3L 10600539 10600545 5 82 4.5 1.0 2.8 1.3 88 chr3L 10600457 intergenic not near genes chr3L 10600501 intergenic not near genes chr3L 10600545 intergenic not near genes chr3L_5_10600001 chr3L_10600001 RAL-787 861 chr3L 10601214 10601226 chr3L 10601306 10601319 4 92 2.0 5.0 3.5 0.9 105 chr3L 10601214 intergenic not near genes chr3L 10601266 intergenic not near genes chr3L 10601319 intergenic not near genes chr3L_4_10600001 chr3L_10600001 RAL-787 862 chr3L 10602659 10602674 chr3L 10602736 10602737 9 78 2.0 4.0 3.0 2.2 78 chr3L 10602659 intergenic not near genes chr3L 10602698 intergenic not near genes chr3L 10602737 intergenic not near genes chr3L_9_10600001 chr3L_10600001 RAL-787 863 chr3L 10613181 10613202 chr3L 10613475 10613497 8 295 0.0 4.5 2.2 2.5 316 chr3L 10613181 intergenic not near genes chr3L 10613339 intergenic not near genes chr3L 10613497 intergenic not near genes chr3L_8_10610001 chr3L_10610001 RAL-787 864 chr3L 10658076 10658212 chr3L 10658153 10658339 17 106 1.0 1.0 1.0 8.5 263 chr3L 10658076 intron CG32066 - chr3L 10658208 intron CG32066 - chr3L 10658339 intron CG32066 - chr3L_17_10655001 chr3L_10655001 RAL-787 865 chr3L 10820515 10820523 chr3L 10820668 10820680 4 156 0.0 2.5 1.2 1.8 165 chr3L 10820515 intergenic not near genes chr3L 10820598 intergenic not near genes chr3L 10820680 intergenic not near genes chr3L_4_10820001 chr3L_10820001 RAL-787 866 chr3L 11083505 11083538 chr3L 11083603 11083636 9 98 0.0 2.0 1.0 4.5 131 chr3L 11083505 intron JIL-1 - chr3L 11083570 intron JIL-1 - chr3L 11083636 intron JIL-1 - chr3L_9_11080001 chr3L_11080001 RAL-787 867 chr3L 11087059 11087089 chr3L 11088848 11088862 S-element 10 1787 0.0 2.5 1.2 4.5 1803 chr3L 11087059 intron JIL-1 - chr3L 11087960 intron JIL-1 - chr3L 11088862 intron JIL-1 - chr3L_10_11085001 chr3L_11085001 RAL-787 868 chr3L 11105306 11105326 chr3L 11107017 11107036 X-element 6 1711 0.5 2.5 1.5 2.4 1730 chr3L 11105306 intergenic not near genes chr3L 11106171 intergenic not near genes chr3L 11107036 exon CG32073 - chr3L_6_11105001 chr3L_11105001 RAL-787 869 chr3L 11135530 11135801 chr3L 11135760 11135886 9 101 0.5 1.0 0.8 5.0 356 chr3L 11135530 intergenic CG14143 + chr3L 11135708 intergenic CG14143 +,CG32082 + chr3L 11135886 intergenic CG32082 +,CG14143 + chr3L_9_11135001 chr3L_11135001 RAL-787 870 chr3L 11145544 11145557 chr3L 11145632 11145643 4 88 0.0 2.5 1.2 1.8 99 chr3L 11145544 intron CG32082 + chr3L 11145594 intron CG32082 + chr3L 11145643 intron CG32082 + chr3L_4_11145001 chr3L_11145001 RAL-787 871 chr3L 11187719 11187739 chr3L 11187800 11187819 5 81 0.0 3.5 1.8 1.8 100 chr3L 11187719 intron GlcAT-P - chr3L 11187769 intron GlcAT-P - chr3L 11187819 intron GlcAT-P - chr3L_5_11185001 chr3L_11185001 RAL-787 872 chr3L 11224553 11224563 chr3L 11224675 11224685 4 122 2.0 0.0 1.0 2.0 132 chr3L 11224553 intron CG42671 + chr3L 11224619 intron CG42671 + chr3L 11224685 intron CG42671 + chr3L_4_11220001 chr3L_11220001 RAL-787 873 chr3L 11241777 11241791 chr3L 11241859 11241873 4 82 0.0 1.0 0.5 2.7 96 chr3L 11241777 intergenic not near genes chr3L 11241825 intergenic not near genes chr3L 11241873 intergenic not near genes chr3L_4_11240001 chr3L_11240001 RAL-787 874 chr3L 11264468 11264494 chr3L 11271420 11271446 17.6 4 6948 0.5 1.5 1.0 2.0 6978 chr3L 11264468 intergenic not near genes chr3L 11267957 intergenic not near genes chr3L 11271446 intergenic not near genes chr3L_4_11265001 chr3L_11265001 RAL-787 875 chr3L 11422473 11422492 chr3L 11422562 11422579 4 88 0.5 0.0 0.2 3.3 106 chr3L 11422473 intergenic not near genes chr3L 11422526 intergenic not near genes chr3L 11422579 intergenic not near genes chr3L_4_11420001 chr3L_11420001 RAL-787 876 chr3L 11433783 11433806 chr3L 11433862 11433886 4 79 2.5 2.0 2.2 1.2 103 chr3L 11433783 intergenic not near genes chr3L 11433834 intergenic not near genes chr3L 11433886 intergenic not near genes chr3L_4_11430001 chr3L_11430001 RAL-787 877 chr3L 11453644 11453665 chr3L 11453712 11453718 7 64 3.0 0.5 1.8 2.5 74 chr3L 11453644 intergenic not near genes chr3L 11453681 intergenic not near genes chr3L 11453718 intergenic not near genes chr3L_7_11450001 chr3L_11450001 RAL-787 878 chr3L 11541209 11541224 chr3L 11541288 11541303 5 78 1.5 1.5 1.5 2.0 94 chr3L 11541209 intron Mob2 - chr3L 11541256 intron Mob2 - chr3L 11541303 intron Mob2 - chr3L_5_11540001 chr3L_11540001 RAL-787 879 chr3L 11548847 11548877 chr3L 11548934 11548964 6 87 5.5 0.0 2.8 1.6 117 chr3L 11548847 intron Mob2 - chr3L 11548906 intron Mob2 - chr3L 11548964 intron Mob2 - chr3L_6_11545001 chr3L_11545001 RAL-787 880 chr3L 11560804 11560810 chr3L 11560882 11560888 5 78 1.5 1.0 1.2 2.3 84 chr3L 11560804 intron Mob2 - chr3L 11560846 intron Mob2 - chr3L 11560888 intron Mob2 - chr3L_5_11560001 chr3L_11560001 RAL-787 881 chr3L 11564801 11564809 chr3L 11572415 11572434 412 4 7622 3.0 3.0 3.0 1.0 7633 chr3L 11564801 exon CG33267 + chr3L 11568618 intron CG33267 + chr3L 11572434 exon CG33267 + chr3L_4_11565001 chr3L_11565001 RAL-787 882 chr3L 11678098 11678124 chr3L 11678185 11678211 7 87 0.5 2.0 1.2 3.2 113 chr3L 11678098 intron CG32085 - chr3L 11678154 intron CG32085 - chr3L 11678211 intron CG32085 - chr3L_7_11675001 chr3L_11675001 RAL-787 883 chr3L 11723081 11723115 chr3L 11727876 11727910 Doc 5 4794 1.0 2.0 1.5 2.0 4829 chr3L 11723081 3` UTR Bmcp + chr3L 11725496 intron Bmcp + chr3L 11727910 3` UTR Bmcp + chr3L_5_11725001 chr3L_11725001 RAL-787 884 chr3L 11846399 11846418 chr3L 11846514 11846535 7 119 0.0 0.0 0.0 7.0 136 chr3L 11846399 intergenic not near genes chr3L 11846467 intergenic not near genes chr3L 11846535 intergenic not near genes chr3L_7_11845001 chr3L_11845001 RAL-787 885 chr3L 11850145 11850170 chr3L 11850240 11850262 8 92 3.0 0.0 1.5 3.2 117 chr3L 11850145 intergenic not near genes chr3L 11850204 intergenic CG44837 - chr3L 11850262 intergenic CG44837 - chr3L_8_11850001 chr3L_11850001 RAL-787 886 chr3L 11864555 11864582 chr3L 11865850 11865877 pogo 6 1294 3.5 1.0 2.2 1.9 1322 chr3L 11864555 intron CG44837 - chr3L 11865216 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_6_11865001 chr3L_11865001 RAL-787 887 chr3L 11906436 11906456 chr3L 11906508 11906532 9 71 2.0 0.5 1.2 4.1 96 chr3L 11906436 intron CG44837 - chr3L 11906484 intron CG44837 - chr3L 11906532 intron CG44837 - chr3L_9_11905001 chr3L_11905001 RAL-787 888 chr3L 12013917 12013938 chr3L 12014008 12014029 11 90 2.5 4.0 3.2 2.6 112 chr3L 12013917 intron rols - chr3L 12013973 intron rols - chr3L 12014029 intron rols - chr3L_11_12010001 chr3L_12010001 RAL-787 889 chr3L 12170793 12170825 chr3L 12170872 12170907 6 80 3.0 2.0 2.5 1.7 114 chr3L 12170793 intron Rh7 - chr3L 12170850 intron Rh7 - chr3L 12170907 intron Rh7 - chr3L_6_12170001 chr3L_12170001 RAL-787 890 chr3L 12290254 12290286 chr3L 12290343 12290369 4 88 2.5 2.0 2.2 1.2 115 chr3L 12290254 intergenic CR45658 - chr3L 12290312 intergenic CR45658 - chr3L 12290369 intergenic CR45658 - chr3L_4_12290001 chr3L_12290001 RAL-787 891 chr3L 12343751 12343765 chr3L 12344963 12344977 7 1211 5.5 3.0 4.2 1.3 1226 chr3L 12343751 intron CrzR - chr3L 12344364 intron CrzR - chr3L 12344977 intron CrzR - chr3L_7_12340001 chr3L_12340001 RAL-787 892 chr3L 12369540 12369566 chr3L 12369630 12369656 7 90 1.5 2.5 2.0 2.3 116 chr3L 12369540 intron Ncc69 - chr3L 12369598 intron Ncc69 - chr3L 12369656 intron Ncc69 - chr3L_7_12365001 chr3L_12365001 RAL-787 893 chr3L 12668072 12668083 chr3L 12668155 12668168 4 84 0.5 4.0 2.2 1.2 96 chr3L 12668072 intergenic not near genes chr3L 12668120 intergenic not near genes chr3L 12668168 intergenic not near genes chr3L_4_12665001 chr3L_12665001 RAL-787 894 chr3L 12706642 12706656 chr3L 12706769 12706782 5 127 2.0 2.5 2.2 1.6 140 chr3L 12706642 intron mirr + chr3L 12706712 intron mirr + chr3L 12706782 intron mirr + chr3L_5_12705001 chr3L_12705001 RAL-787 895 chr3L 12874923 12874961 chr3L 12877215 12877253 jockey 6 2292 3.5 0.0 1.8 2.1 2330 chr3L 12874923 intergenic not near genes chr3L 12876088 intergenic not near genes chr3L 12877253 intergenic not near genes chr3L_6_12875001 chr3L_12875001 RAL-787 896 chr3L 12894800 12894819 chr3L 12894878 12894896 5 78 7.5 7.0 7.2 0.6 96 chr3L 12894800 intergenic CG14118 + chr3L 12894848 intergenic CG14118 + chr3L 12894896 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-787 897 chr3L 12919278 12919303 chr3L 12924750 12924755 Rt1c 6 5468 5.0 2.5 3.8 1.2 5477 chr3L 12919278 intergenic not near genes chr3L 12922016 intergenic not near genes chr3L 12924755 intergenic not near genes chr3L_6_12920001 chr3L_12920001 RAL-787 898 chr3L 12957785 12957815 chr3L 12962267 12962297 copia 9 4482 1.0 2.5 1.8 3.2 4512 chr3L 12957785 intergenic not near genes chr3L 12960041 intergenic not near genes chr3L 12962297 intergenic not near genes chr3L_9_12960001 chr3L_12960001 RAL-787 899 chr3L 12966982 12967010 chr3L 12967611 12967638 11 629 2.5 4.5 3.5 2.4 656 chr3L 12966982 exon Or69a - chr3L 12967310 exon Or69a - chr3L 12967638 exon Or69a - chr3L_11_12965001 chr3L_12965001 RAL-787 900 chr3L 12978761 12978781 chr3L 12978840 12978860 7 77 6.0 0.0 3.0 1.8 99 chr3L 12978761 intergenic not near genes chr3L 12978810 intergenic not near genes chr3L 12978860 intergenic not near genes chr3L_7_12975001 chr3L_12975001 RAL-787 901 chr3L 13007696 13007703 chr3L 13007775 13007778 5 77 2.5 3.0 2.8 1.3 82 chr3L 13007696 exon CG11263 + chr3L 13007737 3` UTR CG11263 + chr3L 13007778 3` UTR CG11263 + chr3L_5_13005001 chr3L_13005001 RAL-787 902 chr3L 13007706 13007943 chr3L 13007771 13008042 5 80 1.0 3.0 2.0 1.7 336 chr3L 13007706 exon CG11263 + chr3L 13007874 3` UTR CG11263 + chr3L 13008042 intergenic CG11263 +,CG14117 + chr3L_5_13005001 chr3L_13005001 RAL-787 903 chr3L 13144119 13144140 chr3L 13144196 13144216 7 75 1.0 5.0 3.0 1.8 97 chr3L 13144119 intergenic not near genes chr3L 13144168 intergenic not near genes chr3L 13144216 intergenic not near genes chr3L_7_13140001 chr3L_13140001 RAL-787 904 chr3L 13205244 13205270 chr3L 13205330 13205356 8 86 6.0 3.0 4.5 1.5 112 chr3L 13205244 intergenic not near genes chr3L 13205300 intergenic not near genes chr3L 13205356 intergenic not near genes chr3L_8_13205001 chr3L_13205001 RAL-787 905 chr3L 13265192 13265217 chr3L 13265269 13265292 8 77 0.5 3.0 1.8 2.9 100 chr3L 13265192 5` UTR caps + chr3L 13265242 5` UTR caps + chr3L 13265292 5` UTR caps + chr3L_8_13265001 chr3L_13265001 RAL-787 906 chr3L 13293126 13293141 chr3L 13293212 13293225 5 85 1.5 5.0 3.2 1.2 99 chr3L 13293126 intergenic not near genes chr3L 13293176 intergenic not near genes chr3L 13293225 intergenic not near genes chr3L_5_13290001 chr3L_13290001 RAL-787 907 chr3L 13295899 13295931 chr3L 13295981 13296013 6 82 0.0 2.5 1.2 2.7 114 chr3L 13295899 intergenic not near genes chr3L 13295956 intergenic not near genes chr3L 13296013 intergenic not near genes chr3L_6_13295001 chr3L_13295001 RAL-787 908 chr3L 13314600 13314611 chr3L 13314683 13314694 4 83 2.5 0.5 1.5 1.6 94 chr3L 13314600 intergenic not near genes chr3L 13314647 intergenic not near genes chr3L 13314694 intergenic not near genes chr3L_4_13310001 chr3L_13310001 RAL-787 909 chr3L 13400526 13400545 chr3L 13400602 13400620 6 76 2.5 0.5 1.5 2.4 94 chr3L 13400526 intron sens - chr3L 13400573 intron sens - chr3L 13400620 intron sens - chr3L_6_13400001 chr3L_13400001 RAL-787 910 chr3L 13422883 13422898 chr3L 13422988 13423006 4 110 2.5 2.0 2.2 1.2 123 chr3L 13422883 intergenic CG33263 - chr3L 13422944 intergenic CG33263 - chr3L 13423006 intergenic CG33263 - chr3L_4_13420001 chr3L_13420001 RAL-787 911 chr3L 13472230 13472260 chr3L 13472307 13472337 5 77 3.0 1.0 2.0 1.7 107 chr3L 13472230 intron CG10089 - chr3L 13472284 intron CG10089 - chr3L 13472337 intron CG10089 - chr3L_5_13470001 chr3L_13470001 RAL-787 912 chr3L 13477007 13477031 chr3L 13477110 13477134 7 103 0.0 0.0 0.0 7.0 127 chr3L 13477007 intergenic not near genes chr3L 13477070 intergenic stv + chr3L 13477134 intergenic stv + chr3L_7_13475001 chr3L_13475001 RAL-787 913 chr3L 13525157 13525189 chr3L 13532950 13532985 roo 16 7794 2.5 3.0 2.8 4.2 7828 chr3L 13525157 intergenic not near genes chr3L 13529071 intergenic not near genes chr3L 13532985 intergenic not near genes chr3L_16_13525001 chr3L_13525001 RAL-787 914 chr3L 13629530 13629548 chr3L 13629638 13629654 8 109 4.0 4.5 4.2 1.5 124 chr3L 13629530 intron bru-3 - chr3L 13629592 intron bru-3 - chr3L 13629654 intron bru-3 - chr3L_8_13625001 chr3L_13625001 RAL-787 915 chr3L 13804545 13804574 chr3L 13822831 13822860 roo 10 18285 2.5 3.0 2.8 2.6 18315 chr3L 13804545 intergenic not near genes chr3L 13813702 intergenic not near genes chr3L 13822860 intergenic not near genes chr3L_10_13810001 chr3L_13810001 RAL-787 916 chr3L 13837263 13837279 chr3L 13837340 13837356 5 77 0.0 0.5 0.2 4.2 93 chr3L 13837263 intergenic CG43184 + chr3L 13837310 intergenic CG43184 + chr3L 13837356 intergenic CG43184 + chr3L_5_13835001 chr3L_13835001 RAL-787 917 chr3L 13957885 13957901 chr3L 13958078 13958094 7 192 2.0 2.5 2.2 2.2 209 chr3L 13957885 intron CG32137 + chr3L 13957990 intron CG32137 + chr3L 13958094 intron CG32137 + chr3L_7_13955001 chr3L_13955001 RAL-787 918 chr3L 14141756 14141781 chr3L 14141844 14141867 6 89 3.0 3.5 3.2 1.4 111 chr3L 14141756 intergenic not near genes chr3L 14141812 intergenic not near genes chr3L 14141867 intergenic not near genes chr3L_6_14140001 chr3L_14140001 RAL-787 919 chr3L 14245577 14245591 chr3L 14245660 14245685 1360 5 90 2.5 3.0 2.8 1.3 108 chr3L 14245577 3` UTR CR44561 - chr3L 14245631 3` UTR CR44561 - chr3L 14245685 3` UTR CR44561 - chr3L_5_14245001 chr3L_14245001 RAL-787 920 chr3L 14260951 14260971 chr3L 14261026 14261049 5 77 2.0 1.5 1.8 1.8 98 chr3L 14260951 intergenic not near genes chr3L 14261000 intergenic not near genes chr3L 14261049 intergenic not near genes chr3L_5_14260001 chr3L_14260001 RAL-787 921 chr3L 14295985 14296009 chr3L 14296471 14296481 roo 11 484 3.5 1.5 2.5 3.1 496 chr3L 14295985 intron fz + chr3L 14296233 intron fz + chr3L 14296481 intron fz + chr3L_11_14295001 chr3L_14295001 RAL-787 922 chr3L 14332748 14332773 chr3L 14332840 14332865 4 92 2.0 0.5 1.2 1.8 117 chr3L 14332748 intron fz + chr3L 14332806 intron fz + chr3L 14332865 intron fz + chr3L_4_14330001 chr3L_14330001 RAL-787 923 chr3L 14356533 14356544 chr3L 14356598 14356624 6 77 2.0 3.5 2.8 1.6 91 chr3L 14356533 intron fz + chr3L 14356578 intron fz + chr3L 14356624 intron fz + chr3L_6_14355001 chr3L_14355001 RAL-787 924 chr3L 14424209 14424238 chr3L 14424314 14424343 10 103 2.0 7.0 4.5 1.8 134 chr3L 14424209 intron bbg - chr3L 14424276 intron bbg - chr3L 14424343 intron bbg - chr3L_10_14420001 chr3L_14420001 RAL-787 925 chr3L 14441601 14441623 chr3L 14441748 14441771 7 148 2.0 4.5 3.2 1.7 170 chr3L 14441601 intron bbg - chr3L 14441686 intron bbg - chr3L 14441771 intron bbg - chr3L_7_14440001 chr3L_14440001 RAL-787 926 chr3L 14444719 14444747 chr3L 14444894 14444922 11 174 2.0 4.5 3.2 2.6 203 chr3L 14444719 intron bbg - chr3L 14444820 intron bbg - chr3L 14444922 intron bbg - chr3L_11_14440001 chr3L_14440001 RAL-787 927 chr3L 14455364 14455385 chr3L 14455445 14455448 4 76 3.5 0.0 1.8 1.4 84 chr3L 14455364 intron bbg - chr3L 14455406 intron bbg - chr3L 14455448 intron bbg - chr3L_4_14455001 chr3L_14455001 RAL-787 928 chr3L 14468449 14468478 chr3L 14473655 14473684 copia 7 5206 1.5 2.5 2.0 2.3 5235 chr3L 14468449 intron bbg - chr3L 14471066 intron bbg - chr3L 14473684 intron bbg - chr3L_7_14470001 chr3L_14470001 RAL-787 929 chr3L 14486016 14486046 chr3L 14486096 14486120 7 79 2.0 1.5 1.8 2.5 104 chr3L 14486016 intron bbg - chr3L 14486068 intron bbg - chr3L 14486120 intron bbg - chr3L_7_14485001 chr3L_14485001 RAL-787 930 chr3L 14565743 14565774 chr3L 14565834 14565865 4 90 2.0 2.5 2.2 1.2 122 chr3L 14565743 intergenic not near genes chr3L 14565804 intergenic not near genes chr3L 14565865 intergenic not near genes chr3L_4_14565001 chr3L_14565001 RAL-787 931 chr3L 14596126 14596140 chr3L 14596206 14596220 4 80 0.0 1.5 0.8 2.2 94 chr3L 14596126 intron HGTX - chr3L 14596173 intron HGTX - chr3L 14596220 intron HGTX - chr3L_4_14595001 chr3L_14595001 RAL-787 932 chr3L 14762193 14762212 chr3L 14766700 14766719 8 4508 29.0 6.5 17.8 0.4 4526 chr3L 14762193 5` UTR CG9384 + chr3L 14764456 exon CG9384 + chr3L 14766719 3` UTR CG9384 + chr3L_8_14760001 chr3L_14760001 RAL-787 933 chr3L 14870062 14870079 chr3L 14870137 14870155 10 76 2.5 4.0 3.2 2.4 93 chr3L 14870062 intron CG17839 + chr3L 14870108 intron CG17839 + chr3L 14870155 intron CG17839 + chr3L_10_14870001 chr3L_14870001 RAL-787 934 chr3L 14893660 14893681 chr3L 14893745 14893765 6 84 1.0 3.5 2.2 1.9 105 chr3L 14893660 intergenic CG34245 - chr3L 14893712 intergenic CG34245 - chr3L 14893765 3` UTR CG34245 - chr3L_6_14890001 chr3L_14890001 RAL-787 935 chr3L 14913903 14913929 chr3L 14913980 14914004 6 76 4.0 1.0 2.5 1.7 101 chr3L 14913903 intron DCX-EMAP + chr3L 14913954 intron DCX-EMAP + chr3L 14914004 intron DCX-EMAP + chr3L_6_14910001 chr3L_14910001 RAL-787 936 chr3L 15053431 15053440 chr3L 15053769 15053779 4 339 0.0 5.0 2.5 1.1 348 chr3L 15053431 intron Sytbeta - chr3L 15053605 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053779 intron,3` UTR Sytbeta -,CG18649 - chr3L_4_15050001 chr3L_15050001 RAL-787 937 chr3L 15087045 15087062 chr3L 15087136 15087153 5 90 4.0 3.0 3.5 1.1 108 chr3L 15087045 intron cp309 - chr3L 15087099 intron cp309 - chr3L 15087153 intron cp309 - chr3L_5_15085001 chr3L_15085001 RAL-787 938 chr3L 15181720 15181753 chr3L 15181797 15181830 6 77 3.5 2.0 2.8 1.6 110 chr3L 15181720 intergenic not near genes chr3L 15181775 intergenic not near genes chr3L 15181830 intergenic not near genes chr3L_6_15180001 chr3L_15180001 RAL-787 939 chr3L 15193697 15193723 chr3L 15193866 15193892 5 169 2.0 2.0 2.0 1.7 195 chr3L 15193697 intergenic not near genes chr3L 15193794 intergenic not near genes chr3L 15193892 intergenic not near genes chr3L_5_15190001 chr3L_15190001 RAL-787 940 chr3L 15310076 15310093 chr3L 15310148 15310174 6 71 1.5 1.5 1.5 2.4 98 chr3L 15310076 exon CG7255 + chr3L 15310125 exon CG7255 + chr3L 15310174 exon CG7255 + chr3L_6_15310001 chr3L_15310001 RAL-787 941 chr3L 15348112 15348139 chr3L 15348269 15348297 7 157 4.0 2.0 3.0 1.8 185 chr3L 15348112 intergenic not near genes chr3L 15348204 intergenic not near genes chr3L 15348297 intergenic not near genes chr3L_7_15345001 chr3L_15345001 RAL-787 942 chr3L 15423760 15423781 chr3L 15426604 15426625 opus 5 2844 2.0 1.0 1.5 2.0 2865 chr3L 15423760 intergenic not near genes chr3L 15425192 intergenic not near genes chr3L 15426625 intergenic not near genes chr3L_5_15425001 chr3L_15425001 RAL-787 943 chr3L 15444655 15444685 chr3L 15444749 15444779 7 94 4.5 5.0 4.8 1.2 124 chr3L 15444655 intergenic not near genes chr3L 15444717 intergenic not near genes chr3L 15444779 intergenic not near genes chr3L_7_15440001 chr3L_15440001 RAL-787 944 chr3L 15482319 15482343 chr3L 15482419 15482445 6 102 1.5 1.5 1.5 2.4 126 chr3L 15482319 intergenic not near genes chr3L 15482382 intergenic not near genes chr3L 15482445 intergenic not near genes chr3L_6_15480001 chr3L_15480001 RAL-787 945 chr3L 15511973 15512000 chr3L 15512051 15512078 6 78 3.0 0.5 1.8 2.1 105 chr3L 15511973 intron Eip71CD + chr3L 15512026 intron Eip71CD + chr3L 15512078 intron Eip71CD + chr3L_6_15510001 chr3L_15510001 RAL-787 946 chr3L 15536615 15536645 chr3L 15536696 15536718 11 78 5.0 3.0 4.0 2.2 103 chr3L 15536615 intron CrebA + chr3L 15536666 intron CrebA + chr3L 15536718 intron CrebA + chr3L_11_15535001 chr3L_15535001 RAL-787 947 chr3L 15541619 15541648 chr3L 15541709 15541738 5 90 2.0 1.0 1.5 2.0 119 chr3L 15541619 intron CrebA + chr3L 15541678 intron CrebA + chr3L 15541738 intron CrebA + chr3L_5_15540001 chr3L_15540001 RAL-787 948 chr3L 15615930 15615958 chr3L 15616026 15616054 6 96 3.0 2.5 2.8 1.6 124 chr3L 15615930 intron comm3 - chr3L 15615992 intron comm3 - chr3L 15616054 intron comm3 - chr3L_6_15615001 chr3L_15615001 RAL-787 949 chr3L 15633183 15633216 chr3L 15633263 15633296 10 80 2.0 1.0 1.5 4.0 113 chr3L 15633183 intron comm3 - chr3L 15633240 intron comm3 - chr3L 15633296 intron comm3 - chr3L_10_15630001 chr3L_15630001 RAL-787 950 chr3L 15691414 15691445 chr3L 15691496 15691527 4 76 0.0 2.5 1.2 1.8 113 chr3L 15691414 intron CG34451 - chr3L 15691470 intron CG34451 - chr3L 15691527 intron CG34451 - chr3L_4_15690001 chr3L_15690001 RAL-787 951 chr3L 15715786 15715812 chr3L 15715862 15715888 8 76 1.5 8.5 5.0 1.3 102 chr3L 15715786 intergenic not near genes chr3L 15715837 intergenic not near genes chr3L 15715888 intergenic not near genes chr3L_8_15715001 chr3L_15715001 RAL-787 952 chr3L 15737378 15737395 chr3L 15737468 15737485 5 89 3.5 1.0 2.2 1.6 107 chr3L 15737378 intergenic not near genes chr3L 15737432 intergenic not near genes chr3L 15737485 intergenic not near genes chr3L_5_15735001 chr3L_15735001 RAL-787 953 chr3L 16154091 16154123 chr3L 16154176 16154193 7 83 3.0 5.0 4.0 1.4 102 chr3L 16154091 intron CG5151 - chr3L 16154142 intron CG5151 - chr3L 16154193 intron CG5151 - chr3L_7_16150001 chr3L_16150001 RAL-787 954 chr3L 16158810 16158827 chr3L 16158895 16158912 6 85 0.0 1.0 0.5 4.0 102 chr3L 16158810 intron CG5151 - chr3L 16158861 intron CG5151 - chr3L 16158912 intron CG5151 - chr3L_6_16155001 chr3L_16155001 RAL-787 955 chr3L 16162601 16162630 chr3L 16162685 16162714 10 82 4.0 1.5 2.8 2.6 113 chr3L 16162601 intron CG5151 - chr3L 16162658 intron CG5151 - chr3L 16162714 intron CG5151 - chr3L_10_16160001 chr3L_16160001 RAL-787 956 chr3L 16184105 16184137 chr3L 16188924 16188946 X-element 6 4817 2.5 3.0 2.8 1.6 4841 chr3L 16184105 intergenic not near genes chr3L 16186526 intergenic not near genes chr3L 16188946 intergenic not near genes chr3L_6_16185001 chr3L_16185001 RAL-787 957 chr3L 16212817 16212838 chr3L 16212908 16212929 5 91 2.5 2.5 2.5 1.4 112 chr3L 16212817 intergenic CG13073 - chr3L 16212873 intergenic CG13073 - chr3L 16212929 intergenic CG13073 - chr3L_5_16210001 chr3L_16210001 RAL-787 958 chr3L 16322823 16322856 chr3L 16322913 16322946 13 89 1.0 2.5 1.8 4.6 123 chr3L 16322823 intergenic not near genes chr3L 16322884 intergenic not near genes chr3L 16322946 intergenic not near genes chr3L_13_16320001 chr3L_16320001 RAL-787 959 chr3L 16443849 16443878 chr3L 16446189 16446217 Doc 9 2337 1.0 4.5 2.8 2.4 2368 chr3L 16443849 intron,intron CG33158 +,dsx-c73A - chr3L 16445033 intron,intron CG33158 +,dsx-c73A - chr3L 16446217 intron,intron CG33158 +,dsx-c73A - chr3L_9_16445001 chr3L_16445001 RAL-787 960 chr3L 16457906 16457927 chr3L 16457982 16458001 6 73 3.5 3.0 3.2 1.4 95 chr3L 16457906 intron CG33158 + chr3L 16457954 intron CG33158 + chr3L 16458001 intron CG33158 + chr3L_6_16455001 chr3L_16455001 RAL-787 961 chr3L 16493975 16494013 chr3L 16494490 16494530 jockey 14 515 5.5 5.0 5.2 2.3 555 chr3L 16493975 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494252 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494530 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_14_16490001 chr3L_16490001 RAL-787 962 chr3L 16528901 16528927 chr3L 16529369 16529395 7 468 1.0 2.0 1.5 2.8 494 chr3L 16528901 intron CG43373 - chr3L 16529148 intron CG43373 - chr3L 16529395 intron CG43373 - chr3L_7_16525001 chr3L_16525001 RAL-787 963 chr3L 16533570 16533586 chr3L 16533680 16533697 4 110 1.0 1.5 1.2 1.8 127 chr3L 16533570 intron CG43373 - chr3L 16533634 intron CG43373 - chr3L 16533697 intron CG43373 - chr3L_4_16530001 chr3L_16530001 RAL-787 964 chr3L 16560324 16560330 chr3L 16560387 16560415 6 77 6.0 1.5 3.8 1.2 91 chr3L 16560324 intergenic not near genes chr3L 16560370 intergenic not near genes chr3L 16560415 intergenic not near genes chr3L_6_16560001 chr3L_16560001 RAL-787 965 chr3L 16561109 16561139 chr3L 16561187 16561197 14 75 1.0 5.0 3.0 3.5 88 chr3L 16561109 intergenic not near genes chr3L 16561153 intergenic not near genes chr3L 16561197 intergenic not near genes chr3L_14_16560001 chr3L_16560001 RAL-787 966 chr3L 16563233 16563255 chr3L 16563314 16563335 6 81 2.5 0.0 1.2 2.7 102 chr3L 16563233 intergenic Mipp1 - chr3L 16563284 intergenic Mipp1 - chr3L 16563335 intergenic Mipp1 - chr3L_6_16560001 chr3L_16560001 RAL-787 967 chr3L 16610686 16610713 chr3L 16610769 16610798 6 84 2.0 5.0 3.5 1.3 112 chr3L 16610686 3` UTR Su(P) - chr3L 16610742 exon Su(P) - chr3L 16610798 exon Su(P) - chr3L_6_16610001 chr3L_16610001 RAL-787 968 chr3L 16638773 16638796 chr3L 16638853 16638876 6 80 2.0 1.0 1.5 2.4 103 chr3L 16638773 intron Abl - chr3L 16638824 intron Abl - chr3L 16638876 intron Abl - chr3L_6_16635001 chr3L_16635001 RAL-787 969 chr3L 16642814 16642831 chr3L 16642889 16642909 5 77 1.0 1.5 1.2 2.3 95 chr3L 16642814 intron Abl - chr3L 16642862 intron Abl - chr3L 16642909 intron Abl - chr3L_5_16640001 chr3L_16640001 RAL-787 970 chr3L 16652681 16652715 chr3L 16652760 16652794 8 78 1.5 5.0 3.2 1.9 113 chr3L 16652681 intron Baldspot - chr3L 16652738 intron Baldspot - chr3L 16652794 intron Baldspot - chr3L_8_16650001 chr3L_16650001 RAL-787 971 chr3L 16745628 16745649 chr3L 16745757 16745763 6 126 5.0 0.5 2.8 1.6 135 chr3L 16745628 intergenic not near genes chr3L 16745696 intergenic not near genes chr3L 16745763 intergenic not near genes chr3L_6_16745001 chr3L_16745001 RAL-787 972 chr3L 16749209 16749238 chr3L 16749284 16749313 6 75 1.0 3.0 2.0 2.0 104 chr3L 16749209 intergenic not near genes chr3L 16749261 intergenic not near genes chr3L 16749313 intergenic not near genes chr3L_6_16745001 chr3L_16745001 RAL-787 973 chr3L 16869578 16869600 chr3L 16869661 16869683 7 83 4.5 2.0 3.2 1.7 105 chr3L 16869578 intron Lmpt + chr3L 16869630 intron Lmpt + chr3L 16869683 intron Lmpt + chr3L_7_16865001 chr3L_16865001 RAL-787 974 chr3L 16870873 16870898 chr3L 16870964 16870989 6 91 1.0 0.5 0.8 3.3 116 chr3L 16870873 intron Lmpt + chr3L 16870931 intron Lmpt + chr3L 16870989 intron Lmpt + chr3L_6_16870001 chr3L_16870001 RAL-787 975 chr3L 16941400 16941432 chr3L 16941501 16941533 4 101 2.0 0.5 1.2 1.8 133 chr3L 16941400 intron Cpr73D - chr3L 16941466 intron Cpr73D - chr3L 16941533 intron Cpr73D - chr3L_4_16940001 chr3L_16940001 RAL-787 976 chr3L 16945727 16945761 chr3L 16954878 16954914 roo 11 9150 6.5 3.0 4.8 1.9 9187 chr3L 16945727 exon Obp73a + chr3L 16950320 intergenic not near genes chr3L 16954914 5` UTR Nc73EF + chr3L_11_16950001 chr3L_16950001 RAL-787 977 chr3L 17085010 17085037 chr3L 17094159 17094185 roo 7 9149 1.5 4.5 3.0 1.8 9175 chr3L 17085010 intron Rbp6 - chr3L 17089598 intron Rbp6 - chr3L 17094185 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-787 978 chr3L 17113877 17113897 chr3L 17113962 17113981 6 85 3.0 6.0 4.5 1.1 104 chr3L 17113877 intron Rbp6 - chr3L 17113929 intron Rbp6 - chr3L 17113981 intron Rbp6 - chr3L_6_17110001 chr3L_17110001 RAL-787 979 chr3L 17149163 17149183 chr3L 17149244 17149260 6 80 3.0 0.0 1.5 2.4 97 chr3L 17149163 intron Rbp6 - chr3L 17149212 intron Rbp6 - chr3L 17149260 intron Rbp6 - chr3L_6_17145001 chr3L_17145001 RAL-787 980 chr3L 17344631 17344647 chr3L 17344713 17344730 6 82 2.5 2.0 2.2 1.9 99 chr3L 17344631 exon brv2 - chr3L 17344680 5` UTR brv2 - chr3L 17344730 intergenic brv2 -,Mip - chr3L_6_17340001 chr3L_17340001 RAL-787 981 chr3L 17367436 17367455 chr3L 17367530 17367549 9 93 2.5 2.5 2.5 2.6 113 chr3L 17367436 intergenic CR45688 +,Cad74A - chr3L 17367492 intergenic CR45688 +,Cad74A - chr3L 17367549 intergenic CR45688 +,Cad74A - chr3L_9_17365001 chr3L_17365001 RAL-787 982 chr3L 17495239 17495249 chr3L 17495354 17495363 6 113 4.5 2.0 3.2 1.4 124 chr3L 17495239 intron,3` UTR Oatp74D +,edin + chr3L 17495301 intron Oatp74D + chr3L 17495363 intron Oatp74D + chr3L_6_17495001 chr3L_17495001 RAL-787 983 chr3L 17498101 17498113 chr3L 17498178 17498190 5 77 1.5 3.5 2.5 1.4 89 chr3L 17498101 intron Oatp74D + chr3L 17498146 intron Oatp74D + chr3L 17498190 intron Oatp74D + chr3L_5_17495001 chr3L_17495001 RAL-787 984 chr3L 17510744 17510755 chr3L 17510828 17510838 4 83 4.0 4.5 4.2 0.8 94 chr3L 17510744 exon Oatp74D + chr3L 17510791 intron Oatp74D + chr3L 17510838 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-787 985 chr3L 17516978 17517010 chr3L 17524536 17524549 412 10 7552 2.0 2.5 2.2 3.1 7571 chr3L 17516978 intron CG7564 + chr3L 17520764 intron CG7564 + chr3L 17524549 3` UTR CG7564 + chr3L_10_17520001 chr3L_17520001 RAL-787 986 chr3L 17535811 17535844 chr3L 17535925 17535958 6 114 2.0 4.0 3.0 1.5 147 chr3L 17535811 intron Nedd4 + chr3L 17535884 intron Nedd4 + chr3L 17535958 intron Nedd4 + chr3L_6_17535001 chr3L_17535001 RAL-787 987 chr3L 17580590 17580608 chr3L 17580766 17580783 6 176 5.0 0.0 2.5 1.7 193 chr3L 17580590 intron Eip74EF - chr3L 17580686 intron Eip74EF - chr3L 17580783 intron Eip74EF - chr3L_6_17580001 chr3L_17580001 RAL-787 988 chr3L 17586968 17586980 chr3L 17587102 17587114 4 134 4.0 1.0 2.5 1.1 146 chr3L 17586968 intron Eip74EF - chr3L 17587041 intron Eip74EF - chr3L 17587114 intron Eip74EF - chr3L_4_17585001 chr3L_17585001 RAL-787 989 chr3L 17636106 17636130 chr3L 17636254 17636278 5 148 0.0 6.5 3.2 1.2 172 chr3L 17636106 intron CG7497 + chr3L 17636192 intron CG7497 + chr3L 17636278 intron CG7497 + chr3L_5_17635001 chr3L_17635001 RAL-787 990 chr3L 17799809 17799839 chr3L 17801596 17801626 S-element 7 1786 1.0 0.5 0.8 3.9 1817 chr3L 17799809 intron NUCB1 - chr3L 17800718 intron NUCB1 - chr3L 17801626 intron NUCB1 - chr3L_7_17800001 chr3L_17800001 RAL-787 991 chr3L 17968139 17968169 chr3L 17968220 17968250 8 77 2.5 4.5 3.5 1.8 111 chr3L 17968139 intron Eip75B - chr3L 17968194 intron Eip75B - chr3L 17968250 intron Eip75B - chr3L_8_17965001 chr3L_17965001 RAL-787 992 chr3L 18013975 18013989 chr3L 18014064 18014078 4 89 1.0 0.0 0.5 2.7 103 chr3L 18013975 intron Eip75B - chr3L 18014026 intron Eip75B - chr3L 18014078 intron Eip75B - chr3L_4_18010001 chr3L_18010001 RAL-787 993 chr3L 18032527 18032558 chr3L 18032613 18032644 6 86 1.5 5.0 3.2 1.4 117 chr3L 18032527 intron Eip75B - chr3L 18032586 intron Eip75B - chr3L 18032644 intron Eip75B - chr3L_6_18030001 chr3L_18030001 RAL-787 994 chr3L 18047707 18047734 chr3L 18056764 18056791 roo 5 9057 1.5 0.5 1.0 2.5 9084 chr3L 18047707 intron Eip75B - chr3L 18052249 intron Eip75B - chr3L 18056791 intron Eip75B - chr3L_5_18050001 chr3L_18050001 RAL-787 995 chr3L 18092798 18092802 chr3L 18092898 18092917 4 111 4.0 0.0 2.0 1.3 119 chr3L 18092798 intron CG13698 - chr3L 18092858 intron CG13698 - chr3L 18092917 intron CG13698 - chr3L_4_18090001 chr3L_18090001 RAL-787 996 chr3L 18171863 18171880 chr3L 18171954 18171961 12 90 3.5 0.0 1.8 4.3 98 chr3L 18171863 intron W - chr3L 18171912 intron W - chr3L 18171961 intron W - chr3L_12_18170001 chr3L_18170001 RAL-787 997 chr3L 18175815 18175834 chr3L 18176054 18176073 5 239 0.0 0.5 0.2 4.2 258 chr3L 18175815 intron W - chr3L 18175944 intron W - chr3L 18176073 intron W - chr3L_5_18175001 chr3L_18175001 RAL-787 998 chr3L 18221099 18221131 chr3L 18221179 18221208 7 80 0.0 0.0 0.0 7.0 109 chr3L 18221099 intergenic not near genes chr3L 18221154 intergenic not near genes chr3L 18221208 intergenic not near genes chr3L_7_18220001 chr3L_18220001 RAL-787 999 chr3L 18223166 18223188 chr3L 18223249 18223266 6 82 1.5 0.5 1.0 3.0 100 chr3L 18223166 intergenic not near genes chr3L 18223216 intergenic not near genes chr3L 18223266 intergenic not near genes chr3L_6_18220001 chr3L_18220001 RAL-787 1000 chr3L 18258868 18258884 chr3L 18258994 18259010 7 126 2.5 2.5 2.5 2.0 142 chr3L 18258868 intergenic not near genes chr3L 18258939 intergenic not near genes chr3L 18259010 intergenic not near genes chr3L_7_18255001 chr3L_18255001 RAL-787 1001 chr3L 18296906 18296935 chr3L 18296983 18297010 8 75 4.5 2.5 3.5 1.8 104 chr3L 18296906 intergenic not near genes chr3L 18296958 intergenic not near genes chr3L 18297010 intergenic not near genes chr3L_8_18295001 chr3L_18295001 RAL-787 1002 chr3L 18434911 18434942 chr3L 18435062 18435093 5 151 1.5 0.0 0.8 2.8 182 chr3L 18434911 intergenic not near genes chr3L 18435002 intergenic not near genes chr3L 18435093 intergenic not near genes chr3L_5_18435001 chr3L_18435001 RAL-787 1003 chr3L 18436060 18436095 chr3L 18436158 18436193 5 98 1.0 1.5 1.2 2.3 133 chr3L 18436060 intergenic not near genes chr3L 18436126 intergenic not near genes chr3L 18436193 intergenic not near genes chr3L_5_18435001 chr3L_18435001 RAL-787 1004 chr3L 18464493 18464510 chr3L 18464573 18464596 4 82 3.0 4.0 3.5 0.9 103 chr3L 18464493 intergenic not near genes chr3L 18464544 intergenic not near genes chr3L 18464596 intergenic not near genes chr3L_4_18460001 chr3L_18460001 RAL-787 1005 chr3L 18506138 18506158 chr3L 18509601 18509621 F-element 7 3460 3.0 3.5 3.2 1.7 3483 chr3L 18506138 intergenic not near genes chr3L 18507880 intergenic not near genes chr3L 18509621 intergenic not near genes chr3L_7_18505001 chr3L_18505001 RAL-787 1006 chr3L 18528633 18528656 chr3L 18537794 18537817 roo 8 9161 1.5 2.0 1.8 2.9 9184 chr3L 18528633 intergenic not near genes chr3L 18533225 intergenic not near genes chr3L 18537817 intergenic not near genes chr3L_8_18530001 chr3L_18530001 RAL-787 1007 chr3L 18677885 18677920 chr3L 18677980 18678015 16 94 0.5 2.5 1.5 6.4 130 chr3L 18677885 intergenic GNBP1 + chr3L 18677950 intergenic GNBP1 + chr3L 18678015 intergenic GNBP1 + chr3L_16_18675001 chr3L_18675001 RAL-787 1008 chr3L 18695956 18695978 chr3L 18696076 18696079 11 116 3.0 1.5 2.2 3.4 123 chr3L 18695956 intergenic CG6893 +,Dic4 - chr3L 18696018 intergenic CG6893 +,Dic4 - chr3L 18696079 intergenic Dic4 -,CG6893 + chr3L_11_18695001 chr3L_18695001 RAL-787 1009 chr3L 18710762 18710791 chr3L 18718713 18718716 Stalker2 4 7945 1.0 2.0 1.5 1.6 7954 chr3L 18710762 intergenic not near genes chr3L 18714739 intergenic not near genes chr3L 18718716 intergenic not near genes chr3L_4_18710001 chr3L_18710001 RAL-787 1010 chr3L 18721772 18721806 chr3L 18721862 18721892 5 87 1.0 2.0 1.5 2.0 120 chr3L 18721772 intergenic CG12477 - chr3L 18721832 intergenic CG12477 - chr3L 18721892 3` UTR CG12477 - chr3L_5_18720001 chr3L_18720001 RAL-787 1011 chr3L 18741539 18741569 chr3L 18741762 18741792 8 221 3.0 2.0 2.5 2.3 253 chr3L 18741539 intergenic not near genes chr3L 18741666 intergenic not near genes chr3L 18741792 intergenic not near genes chr3L_8_18740001 chr3L_18740001 RAL-787 1012 chr3L 18772408 18772441 chr3L 18781089 18781112 roo 7 8679 2.0 4.0 3.0 1.8 8704 chr3L 18772408 intron ftz-f1 - chr3L 18776760 intron ftz-f1 - chr3L 18781112 intron ftz-f1 - chr3L_7_18775001 chr3L_18775001 RAL-787 1013 chr3L 18843864 18843882 chr3L 18843962 18843980 6 98 6.0 1.0 3.5 1.3 116 chr3L 18843864 intron Indy - chr3L 18843922 intron Indy - chr3L 18843980 intron Indy - chr3L_6_18840001 chr3L_18840001 RAL-787 1014 chr3L 18861768 18861797 chr3L 18861861 18861890 11 92 1.5 2.0 1.8 3.9 122 chr3L 18861768 intergenic not near genes chr3L 18861829 intergenic not near genes chr3L 18861890 intergenic not near genes chr3L_11_18860001 chr3L_18860001 RAL-787 1015 chr3L 18929964 18929987 chr3L 18930046 18930071 7 82 2.0 2.0 2.0 2.3 107 chr3L 18929964 intron CG32204 - chr3L 18930018 intron CG32204 - chr3L 18930071 exon CG32204 - chr3L_7_18930001 chr3L_18930001 RAL-787 1016 chr3L 18933104 18933122 chr3L 18933189 18933207 5 84 4.0 1.0 2.5 1.4 103 chr3L 18933104 intron CG32204 - chr3L 18933156 intron CG32204 - chr3L 18933207 intron CG32204 - chr3L_5_18930001 chr3L_18930001 RAL-787 1017 chr3L 18969614 18969619 chr3L 18969707 18969708 5 93 5.5 2.5 4.0 1.0 94 chr3L 18969614 intergenic not near genes chr3L 18969661 intergenic not near genes chr3L 18969708 intergenic not near genes chr3L_5_18965001 chr3L_18965001 RAL-787 1018 chr3L 19008833 19008868 chr3L 19009174 19009206 jockey 9 338 0.5 2.0 1.2 4.1 373 chr3L 19008833 intron nkd - chr3L 19009020 intron nkd - chr3L 19009206 intron nkd - chr3L_9_19005001 chr3L_19005001 RAL-787 1019 chr3L 19115644 19115670 chr3L 19115823 19115845 BS 6 177 4.5 2.5 3.5 1.3 201 chr3L 19115644 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115845 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-787 1020 chr3L 19117043 19117073 chr3L 19124488 19124520 mdg1 8 7444 3.5 3.0 3.2 1.9 7477 chr3L 19117043 intron CG14082 - chr3L 19120782 intron CG14082 - chr3L 19124520 intron CG14082 - chr3L_8_19120001 chr3L_19120001 RAL-787 1021 chr3L 19182390 19182417 chr3L 19182471 19182492 7 80 0.5 1.5 1.0 3.5 102 chr3L 19182390 intron fz2 - chr3L 19182441 intron fz2 - chr3L 19182492 intron fz2 - chr3L_7_19180001 chr3L_19180001 RAL-787 1022 chr3L 19208061 19208080 chr3L 19209435 19209454 Doc 5 1374 4.0 0.5 2.2 1.6 1393 chr3L 19208061 intron fz2 - chr3L 19208758 intron fz2 - chr3L 19209454 intron fz2 - chr3L_5_19205001 chr3L_19205001 RAL-787 1023 chr3L 19221698 19221732 chr3L 19221809 19221843 9 111 2.0 0.5 1.2 4.1 145 chr3L 19221698 intron fz2 - chr3L 19221770 intron fz2 - chr3L 19221843 intron fz2 - chr3L_9_19220001 chr3L_19220001 RAL-787 1024 chr3L 19222373 19222396 chr3L 19222494 19222517 5 120 1.5 2.5 2.0 1.7 144 chr3L 19222373 intron fz2 - chr3L 19222445 intron fz2 - chr3L 19222517 intron fz2 - chr3L_5_19220001 chr3L_19220001 RAL-787 1025 chr3L 19251049 19251084 chr3L 19251148 19251183 9 99 1.5 2.0 1.8 3.2 134 chr3L 19251049 intergenic not near genes chr3L 19251116 intergenic not near genes chr3L 19251183 intergenic not near genes chr3L_9_19250001 chr3L_19250001 RAL-787 1026 chr3L 19263239 19263250 chr3L 19263399 19263411 4 160 4.0 2.5 3.2 1.0 172 chr3L 19263239 intron Max - chr3L 19263325 intron Max - chr3L 19263411 intron Max - chr3L_4_19260001 chr3L_19260001 RAL-787 1027 chr3L 19274190 19274209 chr3L 19274269 19274288 9 79 2.0 3.5 2.8 2.4 98 chr3L 19274190 intergenic CG14085 + chr3L 19274239 intergenic CG14085 + chr3L 19274288 intergenic CG14085 + chr3L_9_19270001 chr3L_19270001 RAL-787 1028 chr3L 19305092 19305115 chr3L 19305446 19305469 6 354 13.0 13.0 13.0 0.4 377 chr3L 19305092 intron pip - chr3L 19305280 intron pip - chr3L 19305469 intron pip - chr3L_6_19305001 chr3L_19305001 RAL-787 1029 chr3L 19343599 19343624 chr3L 19343733 19343764 6 138 0.5 2.0 1.2 2.7 165 chr3L 19343599 exon CG32206 - chr3L 19343682 intron CG32206 - chr3L 19343764 intron CG32206 - chr3L_6_19340001 chr3L_19340001 RAL-787 1030 chr3L 19390725 19390760 chr3L 19390823 19390857 7 97 2.0 2.5 2.2 2.2 132 chr3L 19390725 intron CG32206 - chr3L 19390791 intron CG32206 - chr3L 19390857 intron CG32206 - chr3L_7_19390001 chr3L_19390001 RAL-787 1031 chr3L 19426751 19426779 chr3L 19426825 19426825 11 71 3.5 4.5 4.0 2.2 74 chr3L 19426751 intergenic not near genes chr3L 19426788 intergenic not near genes chr3L 19426825 intergenic not near genes chr3L_11_19425001 chr3L_19425001 RAL-787 1032 chr3L 19513390 19513415 chr3L 19513469 19513494 9 77 3.0 4.5 3.8 1.9 104 chr3L 19513390 intergenic not near genes chr3L 19513442 intergenic not near genes chr3L 19513494 intergenic not near genes chr3L_9_19510001 chr3L_19510001 RAL-787 1033 chr3L 19544235 19544262 chr3L 19544311 19544338 6 76 3.0 1.0 2.0 2.0 103 chr3L 19544235 intergenic CG9279 -,l(3)76BDr - chr3L 19544286 intergenic l(3)76BDr -,CG9279 - chr3L 19544338 intergenic l(3)76BDr -,CG9279 - chr3L_6_19540001 chr3L_19540001 RAL-787 1034 chr3L 19861823 19861846 chr3L 19863610 19863634 S-element 6 1788 6.0 3.0 4.5 1.1 1811 chr3L 19861823 5` UTR CR45433 + chr3L 19862728 intergenic not near genes chr3L 19863634 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-787 1035 chr3L 19946444 19946450 chr3L 19946736 19946745 5 288 10.0 10.5 10.2 0.4 301 chr3L 19946444 intron Ac76E + chr3L 19946594 intron Ac76E + chr3L 19946745 intron Ac76E + chr3L_5_19945001 chr3L_19945001 RAL-787 1036 chr3L 19981203 19981222 chr3L 19981283 19981302 5 80 1.0 1.0 1.0 2.5 99 chr3L 19981203 intergenic CG17732 + chr3L 19981252 intergenic CG17732 + chr3L 19981302 intergenic CG17732 + chr3L_5_19980001 chr3L_19980001 RAL-787 1037 chr3L 20042592 20042605 chr3L 20042672 20042685 4 80 0.0 2.5 1.2 1.8 93 chr3L 20042592 intergenic not near genes chr3L 20042638 intergenic not near genes chr3L 20042685 intergenic not near genes chr3L_4_20040001 chr3L_20040001 RAL-787 1038 chr3L 20113474 20113503 chr3L 20113569 20113598 4 95 1.0 0.0 0.5 2.7 124 chr3L 20113474 intergenic not near genes chr3L 20113536 intergenic not near genes chr3L 20113598 intergenic not near genes chr3L_4_20110001 chr3L_20110001 RAL-787 1039 chr3L 20143081 20143113 chr3L 20143161 20143193 6 80 2.0 1.5 1.8 2.1 112 chr3L 20143081 intergenic not near genes chr3L 20143137 intergenic not near genes chr3L 20143193 intergenic not near genes chr3L_6_20140001 chr3L_20140001 RAL-787 1040 chr3L 20148282 20148315 chr3L 20148372 20148405 10 90 3.5 2.5 3.0 2.5 123 chr3L 20148282 intergenic not near genes chr3L 20148344 intergenic not near genes chr3L 20148405 intergenic not near genes chr3L_10_20145001 chr3L_20145001 RAL-787 1041 chr3L 20156165 20156193 chr3L 20156287 20156314 8 121 4.0 3.0 3.5 1.8 149 chr3L 20156165 intron CG42674 - chr3L 20156240 intron CG42674 - chr3L 20156314 intron CG42674 - chr3L_8_20155001 chr3L_20155001 RAL-787 1042 chr3L 20166203 20166231 chr3L 20166292 20166320 7 89 0.0 4.5 2.2 2.2 117 chr3L 20166203 intron CG42674 - chr3L 20166262 intron CG42674 - chr3L 20166320 intron CG42674 - chr3L_7_20165001 chr3L_20165001 RAL-787 1043 chr3L 20257332 20257361 chr3L 20258452 20258479 pogo 12 1117 1.0 5.0 3.0 3.0 1147 chr3L 20257332 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258479 intron rdgC + chr3L_12_20255001 chr3L_20255001 RAL-787 1044 chr3L 20283679 20283704 chr3L 20283763 20283787 13 83 2.5 2.0 2.2 4.1 108 chr3L 20283679 intron gogo - chr3L 20283733 intron gogo - chr3L 20283787 intron gogo - chr3L_13_20280001 chr3L_20280001 RAL-787 1045 chr3L 20345606 20345639 chr3L 20345687 20345719 10 79 2.5 3.5 3.0 2.5 113 chr3L 20345606 intergenic Rbbp5 - chr3L 20345662 intergenic Rbbp5 - chr3L 20345719 intergenic Rbbp5 - chr3L_10_20345001 chr3L_20345001 RAL-787 1046 chr3L 20386938 20386967 chr3L 20387040 20387068 14 102 3.5 4.0 3.8 2.9 130 chr3L 20386938 intron fbl + chr3L 20387003 intron fbl + chr3L 20387068 intron fbl + chr3L_14_20385001 chr3L_20385001 RAL-787 1047 chr3L 20476758 20476782 chr3L 20484355 20484381 springer 6 7598 2.0 2.5 2.2 1.9 7623 chr3L 20476758 3` UTR isoQC + chr3L 20480570 intergenic not near genes chr3L 20484381 3` UTR ZnT77C - chr3L_6_20480001 chr3L_20480001 RAL-787 1048 chr3L 20487665 20487669 chr3L 20488116 20488119 INE-1 4 451 7.0 1.0 4.0 0.8 454 chr3L 20487665 intron ZnT77C - chr3L 20487892 intron ZnT77C - chr3L 20488119 intron ZnT77C - chr3L_4_20485001 chr3L_20485001 RAL-787 1049 chr3L 20699903 20699927 chr3L 20699979 20700007 11 78 4.0 4.5 4.2 2.1 104 chr3L 20699903 intergenic not near genes chr3L 20699955 intergenic not near genes chr3L 20700007 intergenic not near genes chr3L_11_20695001 chr3L_20695001 RAL-787 1050 chr3L 20710765 20710793 chr3L 20710842 20710870 6 77 2.0 4.0 3.0 1.5 105 chr3L 20710765 intergenic not near genes chr3L 20710818 intergenic not near genes chr3L 20710870 intergenic not near genes chr3L_6_20710001 chr3L_20710001 RAL-787 1051 chr3L 20849272 20849295 chr3L 20849349 20849374 10 79 1.5 3.0 2.2 3.1 102 chr3L 20849272 intron CG32432 - chr3L 20849323 intron CG32432 - chr3L 20849374 intron CG32432 - chr3L_10_20845001 chr3L_20845001 RAL-787 1052 chr3L 20913748 20913781 chr3L 20913829 20913863 9 81 3.0 3.5 3.2 2.1 115 chr3L 20913748 intergenic CR43930 - chr3L 20913806 intergenic CR43930 - chr3L 20913863 intergenic CR43930 - chr3L_9_20910001 chr3L_20910001 RAL-787 1053 chr3L 21014918 21014944 chr3L 21023396 21023402 Tirant 8 8470 1.5 4.0 2.8 2.1 8484 chr3L 21014918 intron skd - chr3L 21019160 intron skd - chr3L 21023402 intron skd - chr3L_8_21015001 chr3L_21015001 RAL-787 1054 chr3L 21082217 21082229 chr3L 21082295 21082307 4 78 2.5 3.0 2.8 1.1 90 chr3L 21082217 intron ko - chr3L 21082262 intron ko - chr3L 21082307 intron ko - chr3L_4_21080001 chr3L_21080001 RAL-787 1055 chr3L 21130569 21130593 chr3L 21130763 21130782 5 193 2.0 4.5 3.2 1.2 213 chr3L 21130569 intron ko - chr3L 21130676 intron ko - chr3L 21130782 intron ko - chr3L_5_21130001 chr3L_21130001 RAL-787 1056 chr3L 21151866 21151896 chr3L 21156950 21156980 flea 6 5084 5.0 1.5 3.2 1.4 5114 chr3L 21151866 intron Ac78C - chr3L 21154423 intron Ac78C - chr3L 21156980 intron Ac78C - chr3L_6_21150001 chr3L_21150001 RAL-787 1057 chr3L 21163243 21163275 chr3L 21163326 21163353 4 80 0.5 4.0 2.2 1.2 110 chr3L 21163243 intron Ac78C - chr3L 21163298 intron Ac78C - chr3L 21163353 intron Ac78C - chr3L_4_21160001 chr3L_21160001 RAL-787 1058 chr3L 21243754 21243764 chr3L 21251317 21251327 412 5 7563 4.5 8.0 6.2 0.7 7573 chr3L 21243754 intron Eip78C + chr3L 21247540 intron Eip78C + chr3L 21251327 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-787 1059 chr3L 21301731 21301762 chr3L 21301817 21301848 15 85 4.5 2.0 3.2 3.6 117 chr3L 21301731 5` UTR CR45432 + chr3L 21301790 5` UTR,3` UTR CR45432 +,CG11309 - chr3L 21301848 5` UTR,3` UTR CR45432 +,CG11309 - chr3L_15_21300001 chr3L_21300001 RAL-787 1060 chr3L 21306147 21306180 chr3L 21315306 21315339 roo 9 9159 0.5 2.0 1.2 4.1 9192 chr3L 21306147 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310743 intron Pc - chr3L 21315339 3` UTR Pc - chr3L_9_21310001 chr3L_21310001 RAL-787 1061 chr3L 21361734 21361750 chr3L 21362683 21362703 G2 6 952 0.0 2.5 1.2 2.7 969 chr3L 21361734 intergenic not near genes chr3L 21362218 intergenic not near genes chr3L 21362703 intergenic not near genes chr3L_6_21360001 chr3L_21360001 RAL-787 1062 chr3L 21362859 21362882 chr3L 21362942 21362966 6 83 2.5 4.0 3.2 1.4 107 chr3L 21362859 intergenic not near genes chr3L 21362912 intergenic not near genes chr3L 21362966 intergenic not near genes chr3L_6_21360001 chr3L_21360001 RAL-787 1063 chr3L 21395148 21395172 chr3L 21395236 21395246 7 86 6.0 2.5 4.2 1.3 98 chr3L 21395148 intron rgn + chr3L 21395197 intron rgn + chr3L 21395246 intron rgn + chr3L_7_21395001 chr3L_21395001 RAL-787 1064 chr3L 21406999 21407019 chr3L 21407073 21407084 4 74 3.5 2.5 3.0 1.0 85 chr3L 21406999 intron rgn + chr3L 21407042 intron rgn + chr3L 21407084 intron rgn + chr3L_4_21405001 chr3L_21405001 RAL-787 1065 chr3L 21415890 21415926 chr3L 21415987 21416019 11 96 1.5 4.5 3.0 2.8 129 chr3L 21415890 intron rgn + chr3L 21415954 intron rgn + chr3L 21416019 intron rgn + chr3L_11_21415001 chr3L_21415001 RAL-787 1066 chr3L 21653523 21653532 chr3L 21653602 21653611 5 78 5.0 4.0 4.5 0.9 88 chr3L 21653523 intron CG43980 + chr3L 21653567 intron CG43980 + chr3L 21653611 intron CG43980 + chr3L_5_21650001 chr3L_21650001 RAL-787 1067 chr3L 21749314 21749350 chr3L 21754472 21754510 Doc 10 5151 3.0 1.5 2.2 3.1 5196 chr3L 21749314 intron Syn1 - chr3L 21751912 intron Syn1 - chr3L 21754510 intron Syn1 - chr3L_10_21750001 chr3L_21750001 RAL-787 1068 chr3L 21776674 21776697 chr3L 21776761 21776784 10 87 1.5 0.5 1.0 5.0 110 chr3L 21776674 intron,intron CG42689 +,CG42552 + chr3L 21776729 intron,intron CG42689 +,CG42552 + chr3L 21776784 intron,intron CG42689 +,CG42552 + chr3L_10_21775001 chr3L_21775001 RAL-787 1069 chr3L 21798765 21798789 chr3L 21798853 21798878 8 89 1.0 2.0 1.5 3.2 113 chr3L 21798765 intergenic not near genes chr3L 21798822 intergenic not near genes chr3L 21798878 intergenic not near genes chr3L_8_21795001 chr3L_21795001 RAL-787 1070 chr3L 21836728 21836758 chr3L 21836814 21836844 4 86 1.0 4.0 2.5 1.1 116 chr3L 21836728 3` UTR P5CDh1 - chr3L 21836786 3` UTR P5CDh1 - chr3L 21836844 3` UTR P5CDh1 - chr3L_4_21835001 chr3L_21835001 RAL-787 1071 chr3L 21868346 21868371 chr3L 21868670 21868695 INE-1 10 323 3.0 4.0 3.5 2.2 349 chr3L 21868346 intron mub + chr3L 21868520 intron mub + chr3L 21868695 intron mub + chr3L_10_21865001 chr3L_21865001 RAL-787 1072 chr3L 21883811 21883845 chr3L 21883891 21883925 12 80 3.0 4.0 3.5 2.7 114 chr3L 21883811 intron mub + chr3L 21883868 intron mub + chr3L 21883925 intron mub + chr3L_12_21880001 chr3L_21880001 RAL-787 1073 chr3L 21905332 21905346 chr3L 21905412 21905425 4 78 6.0 4.5 5.2 0.6 93 chr3L 21905332 intron mub + chr3L 21905378 intron mub + chr3L 21905425 intron mub + chr3L_4_21905001 chr3L_21905001 RAL-787 1074 chr3L 21905349 21905362 chr3L 21905411 21905442 8 75 5.0 3.5 4.2 1.5 93 chr3L 21905349 intron mub + chr3L 21905396 intron mub + chr3L 21905442 intron mub + chr3L_8_21905001 chr3L_21905001 RAL-787 1075 chr3L 21918698 21918721 chr3L 21918873 21918894 4 174 3.5 4.5 4.0 0.8 196 chr3L 21918698 intron mub + chr3L 21918796 intron mub + chr3L 21918894 intron mub + chr3L_4_21915001 chr3L_21915001 RAL-787 1076 chr3L 22099681 22099705 chr3L 22105867 22105891 3S18 4 6186 1.0 3.5 2.2 1.2 6210 chr3L 22099681 intergenic not near genes chr3L 22102786 intergenic not near genes chr3L 22105891 intergenic not near genes chr3L_4_22100001 chr3L_22100001 RAL-787 1077 chr3L 22122173 22122198 chr3L 22122515 22122542 11 343 3.0 1.5 2.2 3.4 369 chr3L 22122173 5` UTR CR45236 + chr3L 22122358 intergenic CR45236 +,CR45235 + chr3L 22122542 intergenic CR45235 +,CR45236 + chr3L_11_22120001 chr3L_22120001 RAL-787 1078 chr3L 22137524 22137554 chr3L 22137598 22137628 5 75 1.5 2.5 2.0 1.7 104 chr3L 22137524 intron olf413 + chr3L 22137576 intron olf413 + chr3L 22137628 intron olf413 + chr3L_5_22135001 chr3L_22135001 RAL-787 1079 chr3L 22241316 22241322 chr3L 22241373 22241403 4 66 1.5 4.0 2.8 1.1 87 chr3L 22241316 intron olf413 + chr3L 22241360 intron olf413 + chr3L 22241403 intron olf413 + chr3L_4_22240001 chr3L_22240001 RAL-787 1080 chr3L 22369330 22369346 chr3L 22369429 22369457 5 109 1.0 3.5 2.2 1.6 127 chr3L 22369330 intron Ten-m - chr3L 22369394 intron Ten-m - chr3L 22369457 intron Ten-m - chr3L_5_22365001 chr3L_22365001 RAL-787 1081 chr3L 22447200 22447226 chr3L 22447290 22447317 9 90 5.0 3.5 4.2 1.7 117 chr3L 22447200 intergenic not near genes chr3L 22447258 intergenic not near genes chr3L 22447317 intergenic not near genes chr3L_9_22445001 chr3L_22445001 RAL-787 1082 chr3L 22555781 22555799 chr3L 22563240 22563269 blood 5 7461 4.5 1.0 2.8 1.3 7488 chr3L 22555781 intergenic not near genes chr3L 22559525 intergenic not near genes chr3L 22563269 intergenic not near genes chr3L_5_22555001 chr3L_22555001 RAL-787 1083 chr3L 22577625 22577640 chr3L 22582412 22582428 Doc 7 4787 4.0 3.5 3.8 1.5 4803 chr3L 22577625 intergenic not near genes chr3L 22580026 intergenic not near genes chr3L 22582428 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-787 1084 chr3L 22617198 22617218 chr3L 22624644 22624670 blood 6 7450 2.5 2.5 2.5 1.7 7472 chr3L 22617198 intron CG14459 - chr3L 22620934 intron CG14459 - chr3L 22624670 intron CG14459 - chr3L_6_22620001 chr3L_22620001 RAL-787 1085 chr3L 22761385 22761417 chr3L 22766819 22766851 Ivk 4 5430 2.0 5.0 3.5 0.9 5466 chr3L 22761385 intron SPoCk + chr3L 22764118 intron SPoCk + chr3L 22766851 intron SPoCk + chr3L_4_22760001 chr3L_22760001 RAL-787 1086 chr3L 22853696 22853722 chr3L 22853781 22853807 6 86 2.0 3.0 2.5 1.7 111 chr3L 22853696 5` UTR CR43426 + chr3L 22853752 5` UTR CR43426 + chr3L 22853807 5` UTR CR43426 + chr3L_6_22850001 chr3L_22850001 RAL-787 1087 chr3L 22865980 22866013 chr3L 22867113 22867146 Doc 5 1131 5.5 2.0 3.8 1.0 1166 chr3L 22865980 intron CG33170 + chr3L 22866563 intron CG33170 + chr3L 22867146 intron CG33170 + chr3L_5_22865001 chr3L_22865001 RAL-787 1088 chr3L 22897200 22897226 chr3L 22897282 22897308 11 82 1.5 4.0 2.8 2.9 108 chr3L 22897200 intergenic not near genes chr3L 22897254 intergenic not near genes chr3L 22897308 intergenic not near genes chr3L_11_22895001 chr3L_22895001 RAL-787 1089 chr3L 22949198 22949221 chr3L 22949286 22949309 4 88 2.0 1.0 1.5 1.6 111 chr3L 22949198 intron Mes2 + chr3L 22949254 intron Mes2 + chr3L 22949309 intron Mes2 + chr3L_4_22945001 chr3L_22945001 RAL-787 1090 chr3L 22989874 22989890 chr3L 22996843 22996863 297 7 6969 3.0 4.5 3.8 1.5 6989 chr3L 22989874 intergenic not near genes chr3L 22993368 intergenic not near genes chr3L 22996863 intergenic not near genes chr3L_7_22990001 chr3L_22990001 RAL-787 1091 chr3L 23011154 23011171 chr3L 23011231 23011246 6 77 2.0 2.0 2.0 2.0 92 chr3L 23011154 intron nrm + chr3L 23011200 intron nrm + chr3L 23011246 intron nrm + chr3L_6_23010001 chr3L_23010001 RAL-787 1092 chr3L 23875525 23875555 chr3L 23875606 23875628 7 79 4.0 3.5 3.8 1.5 103 chr3L 23875525 intron CG40470 - chr3L 23875576 intron CG40470 - chr3L 23875628 intron CG40470 - chr3L_7_23875001 chr3L_23875001 RAL-787 1093 chr3L 24012421 24012439 chr3L 24020755 24020775 roo 6 8338 2.5 3.5 3.0 1.5 8354 chr3L 24012421 intergenic not near genes chr3L 24016598 intergenic not near genes chr3L 24020775 intergenic not near genes chr3L_6_24015001 chr3L_24015001 RAL-787 1094 chr3L 24168635 24168656 chr3L 24176389 24176410 ZAM 9 7756 3.5 2.0 2.8 2.4 7775 chr3L 24168635 intron Snap25 + chr3L 24172522 intron Snap25 + chr3L 24176410 intron Snap25 + chr3L_9_24170001 chr3L_24170001 RAL-787 1095 chr3L 25502200 25502231 chr3L 25502303 25502313 4 97 4.5 7.0 5.8 0.6 113 chr3L 25502200 intron CG41343 - chr3L 25502256 intron CG41343 - chr3L 25502313 intron CG41343 - chr3L_4_25500001 chr3L_25500001 RAL-787 1096 chr3L 25635712 25635746 chr3L 25635984 25636018 11 272 2.0 2.0 2.0 3.7 306 chr3L 25635712 intron CG41343 - chr3L 25635865 intron CG41343 - chr3L 25636018 intron CG41343 - chr3L_11_25635001 chr3L_25635001 RAL-787 1097 chr3L 23289002 23289022 chr3L 25843683 25843703 5 2554681 23.0 10.0 16.5 0.3 2554701 chr3L 23289002 intergenic not near genes chr3L 24566352 intergenic not near genes chr3L 25843703 intron CG40178 - chr3L_5_24565001 chr3L_24565001 RAL-787 1098 chr3L 26717665 26717691 chr3L 26717741 26717767 6 75 3.0 2.0 2.5 1.7 102 chr3L 26717665 intergenic not near genes chr3L 26717716 intergenic not near genes chr3L 26717767 intergenic not near genes chr3L_6_26715001 chr3L_26715001 RAL-787 1099 chr3L 27269443 27269465 chr3L 27269523 27269548 4 82 4.5 1.5 3.0 1.0 105 chr3L 27269443 intergenic not near genes chr3L 27269496 intergenic not near genes chr3L 27269548 intergenic not near genes chr3L_4_27265001 chr3L_27265001 RAL-787 1100 chr3L 27390689 27390711 chr3L 27390767 27390781 5 77 22.5 21.5 22.0 0.2 92 chr3L 27390689 intron Dbp80 + chr3L 27390735 intron Dbp80 + chr3L 27390781 intron Dbp80 + chr3L_5_27390001 chr3L_27390001 RAL-787 1101 chr3R 2534139 2534153 chr3R 2541708 2541719 4 7568 10.0 18.5 14.2 0.3 7580 chr3R 2534139 intergenic not near genes chr3R 2537929 intergenic not near genes chr3R 2541719 intergenic not near genes chr3R_4_2535001 chr3R_2535001 RAL-787 1102 chr3R 2534159 2534167 chr3R 2541700 2541735 6 7554 9.5 19.0 14.2 0.4 7576 chr3R 2534159 intergenic not near genes chr3R 2537947 intergenic not near genes chr3R 2541735 intergenic not near genes chr3R_6_2535001 chr3R_2535001 RAL-787 1103 chr3R 2556890 2556898 chr3R 2557623 2557631 4 733 12.5 11.0 11.8 0.3 741 chr3R 2556890 intron CG41056 - chr3R 2557260 intron CG41056 - chr3R 2557631 intron CG41056 - chr3R_4_2555001 chr3R_2555001 RAL-787 1104 chr3R 3178700 3178711 chr3R 3595184 3595184 6 416481 11.5 14.5 13.0 0.4 416484 chr3R 3178700 intron CG42617 - chr3R 3386942 intergenic not near genes chr3R 3595184 intergenic not near genes chr3R_6_3385001 chr3R_3385001 RAL-787 1105 chr3R 4063813 4063834 chr3R 4069090 4069099 4 5272 4.5 7.5 6.0 0.6 5286 chr3R 4063813 intergenic not near genes chr3R 4066456 intergenic not near genes chr3R 4069099 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-787 1106 chr3R 4408411 4408442 chr3R 4412715 4412746 Juan 14 4304 2.5 2.0 2.2 4.4 4335 chr3R 4408411 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_14_4410001 chr3R_4410001 RAL-787 1107 chr3R 4609549 4609582 chr3R 4610712 4610745 1360 8 1164 5.5 5.0 5.2 1.3 1196 chr3R 4609549 intergenic not near genes chr3R 4610147 intergenic not near genes chr3R 4610745 intergenic not near genes chr3R_8_4610001 chr3R_4610001 RAL-787 1108 chr3R 4739118 4739144 chr3R 4739193 4739220 8 75 3.5 2.5 3.0 2.0 102 chr3R 4739118 intron tacc - chr3R 4739169 intron tacc - chr3R 4739220 intron tacc - chr3R_8_4735001 chr3R_4735001 RAL-787 1109 chr3R 4769165 4769189 chr3R 4769243 4769265 8 76 1.0 2.0 1.5 3.2 100 chr3R 4769165 intron,intron atms +,CG44098 - chr3R 4769215 intron,intron atms +,CG44098 - chr3R 4769265 intron,intron atms +,CG44098 - chr3R_8_4765001 chr3R_4765001 RAL-787 1110 chr3R 4887483 4887500 chr3R 4894860 4894877 rover 5 7376 6.0 6.5 6.2 0.7 7394 chr3R 4887483 intergenic not near genes chr3R 4891180 intergenic not near genes chr3R 4894877 intergenic not near genes chr3R_5_4890001 chr3R_4890001 RAL-787 1111 chr3R 4904877 4904889 chr3R 18214682 18214687 7 13309804 12.0 6.0 9.0 0.7 13309810 chr3R 4904877 intergenic not near genes chr3R 11559782 3` UTR CG10898 + chr3R 18214687 3` UTR CG7985 + chr3R_7_11555001 chr3R_11555001 RAL-787 1112 chr3R 4975949 4975961 chr3R 4976050 4976062 5 100 0.5 4.0 2.2 1.6 113 chr3R 4975949 intergenic not near genes chr3R 4976006 intergenic not near genes chr3R 4976062 intergenic not near genes chr3R_5_4975001 chr3R_4975001 RAL-787 1113 chr3R 5045845 5045875 chr3R 5052947 5052977 HMS-Beagle 7 7102 1.0 3.0 2.0 2.3 7132 chr3R 5045845 intron CR43635 - chr3R 5049411 intergenic not near genes chr3R 5052977 intergenic CR45588 - chr3R_7_5045001 chr3R_5045001 RAL-787 1114 chr3R 5067981 5068013 chr3R 5073498 5073530 mdg3 15 5516 5.0 3.0 4.0 3.0 5549 chr3R 5067981 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073530 intergenic not near genes chr3R_15_5070001 chr3R_5070001 RAL-787 1115 chr3R 5158152 5158171 chr3R 5158245 5158264 4 93 2.5 2.5 2.5 1.1 112 chr3R 5158152 intron dpr16 + chr3R 5158208 intron dpr16 + chr3R 5158264 intron dpr16 + chr3R_4_5155001 chr3R_5155001 RAL-787 1116 chr3R 5191365 5191398 chr3R 5191644 5191674 7 281 26.5 29.0 27.8 0.2 309 chr3R 5191365 intron cno - chr3R 5191520 intron cno - chr3R 5191674 intron cno - chr3R_7_5190001 chr3R_5190001 RAL-787 1117 chr3R 5338397 5338427 chr3R 5343573 5343604 Rt1c 17 5175 1.5 4.5 3.0 4.2 5207 chr3R 5338397 intron mtd - chr3R 5341000 intron mtd - chr3R 5343604 intron mtd - chr3R_17_5340001 chr3R_5340001 RAL-787 1118 chr3R 5445962 5445994 chr3R 5452422 5452454 Burdock 8 6459 2.5 1.5 2.0 2.7 6492 chr3R 5445962 intron CG14669 + chr3R 5449208 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_8_5445001 chr3R_5445001 RAL-787 1119 chr3R 5506844 5506870 chr3R 5506976 5507002 4 132 0.5 2.5 1.5 1.6 158 chr3R 5506844 intergenic not near genes chr3R 5506923 intergenic not near genes chr3R 5507002 intergenic not near genes chr3R_4_5505001 chr3R_5505001 RAL-787 1120 chr3R 5627149 5627176 chr3R 5627560 5627574 7 408 2.5 3.5 3.0 1.8 425 chr3R 5627149 intergenic not near genes chr3R 5627362 intergenic CG31551 + chr3R 5627574 intergenic CG31551 + chr3R_7_5625001 chr3R_5625001 RAL-787 1121 chr3R 5726112 5726124 chr3R 5726273 5726286 4 162 1.0 3.5 2.2 1.2 174 chr3R 5726112 intergenic not near genes chr3R 5726199 intergenic not near genes chr3R 5726286 intergenic not near genes chr3R_4_5725001 chr3R_5725001 RAL-787 1122 chr3R 5746018 5746044 chr3R 5746257 5746284 pogo 8 240 1.5 4.0 2.8 2.1 266 chr3R 5746018 3` UTR Madm + chr3R 5746151 3` UTR Madm + chr3R 5746284 3` UTR Madm + chr3R_8_5745001 chr3R_5745001 RAL-787 1123 chr3R 5772383 5772409 chr3R 5772541 5772567 9 158 0.5 4.0 2.2 2.8 184 chr3R 5772383 intron CG2082 - chr3R 5772475 intron CG2082 - chr3R 5772567 intron CG2082 - chr3R_9_5770001 chr3R_5770001 RAL-787 1124 chr3R 5809130 5809144 chr3R 5809364 5809385 pogo 4 238 3.5 4.0 3.8 0.8 255 chr3R 5809130 3` UTR CG11000 + chr3R 5809258 3` UTR CG11000 + chr3R 5809385 3` UTR CG11000 + chr3R_4_5805001 chr3R_5805001 RAL-787 1125 chr3R 5822388 5822407 chr3R 5823555 5823573 1360 6 1167 3.0 5.5 4.2 1.2 1185 chr3R 5822388 3` UTR CG2023 - chr3R 5822980 3` UTR CG2023 - chr3R 5823573 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-787 1126 chr3R 5900793 5900816 chr3R 5900879 5900901 8 85 2.5 2.5 2.5 2.3 108 chr3R 5900793 intron CG34113 - chr3R 5900847 intron CG34113 - chr3R 5900901 intron CG34113 - chr3R_8_5900001 chr3R_5900001 RAL-787 1127 chr3R 5927561 5927590 chr3R 5927801 5927830 pogo 6 240 2.0 2.0 2.0 2.0 269 chr3R 5927561 intron CG34113 - chr3R 5927696 intron CG34113 - chr3R 5927830 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-787 1128 chr3R 5989333 5989365 chr3R 5989416 5989448 4 82 2.0 1.5 1.8 1.4 115 chr3R 5989333 5` UTR CR44927 + chr3R 5989390 5` UTR CR44927 + chr3R 5989448 5` UTR CR44927 + chr3R_4_5985001 chr3R_5985001 RAL-787 1129 chr3R 6015964 6015995 chr3R 6024444 6024450 Tirant 9 8475 2.5 7.0 4.8 1.6 8486 chr3R 6015964 intergenic not near genes chr3R 6020207 intergenic not near genes chr3R 6024450 intergenic not near genes chr3R_9_6020001 chr3R_6020001 RAL-787 1130 chr3R 6048447 6048477 chr3R 6048530 6048560 15 82 3.5 5.5 4.5 2.7 113 chr3R 6048447 intergenic not near genes chr3R 6048504 intergenic not near genes chr3R 6048560 intergenic not near genes chr3R_15_6045001 chr3R_6045001 RAL-787 1131 chr3R 6109516 6109528 chr3R 6109642 6109651 6 125 2.5 5.0 3.8 1.2 135 chr3R 6109516 exon Obp83cd + chr3R 6109584 exon Obp83cd + chr3R 6109651 3` UTR,3` UTR Obp83cd +,Obp83ef - chr3R_6_6105001 chr3R_6105001 RAL-787 1132 chr3R 6158523 6158542 chr3R 6167096 6167120 Tirant 6 8580 5.0 2.5 3.8 1.2 8597 chr3R 6158523 intergenic not near genes chr3R 6162822 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_6_6160001 chr3R_6160001 RAL-787 1133 chr3R 6175189 6175197 chr3R 6182461 6182469 HMS-Beagle2 5 7272 2.0 4.5 3.2 1.2 7280 chr3R 6175189 intergenic Osi1 + chr3R 6178829 intron CR45194 + chr3R 6182469 intergenic CR45194 + chr3R_5_6175001 chr3R_6175001 RAL-787 1134 chr3R 6188909 6188934 chr3R 6188986 6189011 6 77 0.5 4.0 2.2 1.9 102 chr3R 6188909 intron NPFR + chr3R 6188960 intron NPFR + chr3R 6189011 5` UTR NPFR + chr3R_6_6185001 chr3R_6185001 RAL-787 1135 chr3R 6191173 6191201 chr3R 6191252 6191280 12 80 1.5 2.0 1.8 4.3 107 chr3R 6191173 intron NPFR + chr3R 6191226 intron NPFR + chr3R 6191280 intron NPFR + chr3R_12_6190001 chr3R_6190001 RAL-787 1136 chr3R 6578881 6578910 chr3R 6579001 6579023 6 118 3.0 2.0 2.5 1.7 142 chr3R 6578881 intron dpr11 - chr3R 6578952 intron dpr11 - chr3R 6579023 intron dpr11 - chr3R_6_6575001 chr3R_6575001 RAL-787 1137 chr3R 6737503 6737518 chr3R 6739288 6739302 Doc 5 1786 1.0 1.5 1.2 2.3 1799 chr3R 6737503 intron pb - chr3R 6738402 intron pb - chr3R 6739302 intron pb - chr3R_5_6735001 chr3R_6735001 RAL-787 1138 chr3R 6804205 6804223 chr3R 6804313 6804332 5 109 5.0 3.0 4.0 1.0 127 chr3R 6804205 intergenic not near genes chr3R 6804268 intergenic not near genes chr3R 6804332 intergenic not near genes chr3R_5_6800001 chr3R_6800001 RAL-787 1139 chr3R 6978895 6978912 chr3R 6978978 6978997 7 83 0.0 4.0 2.0 2.3 102 chr3R 6978895 intron Antp - chr3R 6978946 intron Antp - chr3R 6978997 intron Antp - chr3R_7_6975001 chr3R_6975001 RAL-787 1140 chr3R 7092785 7092818 chr3R 7093349 7093382 8 564 0.5 3.0 1.8 2.9 597 chr3R 7092785 3` UTR CR43685 - chr3R 7093084 intron CR43685 - chr3R 7093382 3` UTR CR43685 - chr3R_8_7090001 chr3R_7090001 RAL-787 1141 chr3R 7103291 7103314 chr3R 7103360 7103390 4 74 3.0 3.5 3.2 1.0 99 chr3R 7103291 intron Alh - chr3R 7103340 intron Alh - chr3R 7103390 intron Alh - chr3R_4_7100001 chr3R_7100001 RAL-787 1142 chr3R 7105327 7105352 chr3R 7105410 7105435 8 83 0.5 4.5 2.5 2.3 108 chr3R 7105327 intron Alh - chr3R 7105381 intron Alh - chr3R 7105435 intron Alh - chr3R_8_7105001 chr3R_7105001 RAL-787 1143 chr3R 7132852 7132871 chr3R 7132943 7132962 7 91 1.0 2.0 1.5 2.8 110 chr3R 7132852 intergenic CG31493 + chr3R 7132907 intergenic CG31493 + chr3R 7132962 intergenic CG31493 + chr3R_7_7130001 chr3R_7130001 RAL-787 1144 chr3R 7302296 7302315 chr3R 7302388 7302406 12 92 4.5 3.0 3.8 2.5 110 chr3R 7302296 intron rn - chr3R 7302351 intron rn - chr3R 7302406 intron rn - chr3R_12_7300001 chr3R_7300001 RAL-787 1145 chr3R 7404944 7404965 chr3R 7405020 7405041 7 76 0.0 1.5 0.8 3.9 97 chr3R 7404944 intergenic not near genes chr3R 7404992 intergenic not near genes chr3R 7405041 intergenic not near genes chr3R_7_7400001 chr3R_7400001 RAL-787 1146 chr3R 7481831 7481865 chr3R 7481909 7481916 4 71 1.5 1.0 1.2 1.8 85 chr3R 7481831 intergenic not near genes chr3R 7481874 intergenic not near genes chr3R 7481916 intergenic not near genes chr3R_4_7480001 chr3R_7480001 RAL-787 1147 chr3R 7556937 7556963 chr3R 7557030 7557056 11 93 1.5 2.5 2.0 3.7 119 chr3R 7556937 intergenic not near genes chr3R 7556996 intergenic not near genes chr3R 7557056 intergenic not near genes chr3R_11_7555001 chr3R_7555001 RAL-787 1148 chr3R 7621530 7621563 chr3R 7621621 7621647 4 89 0.5 1.0 0.8 2.2 117 chr3R 7621530 intron CG34127 - chr3R 7621588 intron CG34127 - chr3R 7621647 intron CG34127 - chr3R_4_7620001 chr3R_7620001 RAL-787 1149 chr3R 7677922 7677945 chr3R 7678031 7678058 8 110 0.5 3.0 1.8 2.9 136 chr3R 7677922 intron Nlg1 + chr3R 7677990 intron Nlg1 + chr3R 7678058 intron Nlg1 + chr3R_8_7675001 chr3R_7675001 RAL-787 1150 chr3R 7724443 7724471 chr3R 7724533 7724561 7 89 4.0 7.5 5.8 1.0 118 chr3R 7724443 3` UTR CG2616 + chr3R 7724502 3` UTR CG2616 + chr3R 7724561 3` UTR CG2616 + chr3R_7_7720001 chr3R_7720001 RAL-787 1151 chr3R 7729469 7729495 chr3R 7737407 7737433 Stalker2 9 7936 3.5 2.0 2.8 2.4 7964 chr3R 7729469 intergenic not near genes chr3R 7733451 intergenic not near genes chr3R 7737433 intergenic not near genes chr3R_9_7730001 chr3R_7730001 RAL-787 1152 chr3R 7744948 7744965 chr3R 7745199 7745215 4 250 3.0 3.0 3.0 1.0 267 chr3R 7744948 intergenic not near genes chr3R 7745082 intergenic not near genes chr3R 7745215 intergenic not near genes chr3R_4_7745001 chr3R_7745001 RAL-787 1153 chr3R 7821718 7821744 chr3R 7821814 7821840 12 96 1.0 4.0 2.5 3.4 122 chr3R 7821718 intron CG34384 + chr3R 7821779 intron CG34384 + chr3R 7821840 intron CG34384 + chr3R_12_7820001 chr3R_7820001 RAL-787 1154 chr3R 7830306 7830320 chr3R 7830457 7830471 5 146 3.5 3.5 3.5 1.1 165 chr3R 7830306 intron CG34384 + chr3R 7830388 intron CG34384 + chr3R 7830471 intron CG34384 + chr3R_5_7830001 chr3R_7830001 RAL-787 1155 chr3R 7849651 7849673 chr3R 7850818 7850839 1360 8 1166 0.5 7.5 4.0 1.6 1188 chr3R 7849651 intron CG34384 + chr3R 7850245 intron CG34384 + chr3R 7850839 intron CG34384 + chr3R_8_7850001 chr3R_7850001 RAL-787 1156 chr3R 7951468 7951488 chr3R 7951567 7951587 7 99 1.0 1.0 1.0 3.5 119 chr3R 7951468 intron dsx - chr3R 7951528 intron dsx - chr3R 7951587 intron dsx - chr3R_7_7950001 chr3R_7950001 RAL-787 1157 chr3R 7973316 7973343 chr3R 7974378 7974405 1360 4 1062 3.5 4.0 3.8 0.8 1089 chr3R 7973316 intergenic not near genes chr3R 7973860 intergenic not near genes chr3R 7974405 intergenic CD98hc - chr3R_4_7970001 chr3R_7970001 RAL-787 1158 chr3R 8090271 8090303 chr3R 8090448 8090480 9 177 3.0 2.5 2.8 2.4 209 chr3R 8090271 5` UTR CR44330 + chr3R 8090376 intergenic CR44330 + chr3R 8090480 intergenic CR44330 + chr3R_9_8090001 chr3R_8090001 RAL-787 1159 chr3R 8094406 8094439 chr3R 8099711 8099744 Transpac 9 5305 3.5 1.5 2.5 2.6 5338 chr3R 8094406 intron CG7900 + chr3R 8097075 intron CG7900 + chr3R 8099744 intron CG7900 + chr3R_9_8095001 chr3R_8095001 RAL-787 1160 chr3R 8101768 8101793 chr3R 8104851 8104877 G2 4 3082 1.5 4.5 3.0 1.0 3109 chr3R 8101768 exon CG7900 + chr3R 8103322 intron CG7900 + chr3R 8104877 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-787 1161 chr3R 8182650 8182688 chr3R 8182744 8182782 7 92 0.5 2.5 1.5 2.8 132 chr3R 8182650 intergenic not near genes chr3R 8182716 intergenic not near genes chr3R 8182782 intergenic not near genes chr3R_7_8180001 chr3R_8180001 RAL-787 1162 chr3R 8188385 8188516 chr3R 8188470 8188607 9 85 2.0 2.0 2.0 3.0 222 chr3R 8188385 intergenic not near genes chr3R 8188496 intergenic not near genes chr3R 8188607 intergenic not near genes chr3R_9_8185001 chr3R_8185001 RAL-787 1163 chr3R 8339246 8339247 chr3R 21907534 21907536 8 13568289 11.5 22.5 17.0 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_8_15120001 chr3R_15120001 RAL-787 1164 chr3R 8403024 8403041 chr3R 8412179 8412205 roo 9 9161 6.0 3.0 4.5 1.6 9181 chr3R 8403024 intron CG45263 - chr3R 8407614 intron CG45263 - chr3R 8412205 intron CG45263 - chr3R_9_8405001 chr3R_8405001 RAL-787 1165 chr3R 8418674 8418699 chr3R 8418778 8418803 8 103 4.0 1.5 2.8 2.1 129 chr3R 8418674 intron CG45263 - chr3R 8418738 intron CG45263 - chr3R 8418803 intron CG45263 - chr3R_8_8415001 chr3R_8415001 RAL-787 1166 chr3R 8541340 8541363 chr3R 8541421 8541442 11 80 3.0 2.0 2.5 3.1 102 chr3R 8541340 intergenic not near genes chr3R 8541391 intergenic not near genes chr3R 8541442 intergenic not near genes chr3R_11_8540001 chr3R_8540001 RAL-787 1167 chr3R 8570477 8570493 chr3R 8575113 8575129 HMS-Beagle 5 4636 6.5 1.5 4.0 1.0 4652 chr3R 8570477 intergenic not near genes chr3R 8572803 intergenic not near genes chr3R 8575129 intergenic not near genes chr3R_5_8570001 chr3R_8570001 RAL-787 1168 chr3R 8579107 8579119 chr3R 8579189 8579207 5 93 2.0 3.0 2.5 1.4 100 chr3R 8579107 intron 5-HT2B + chr3R 8579157 intron 5-HT2B + chr3R 8579207 intron 5-HT2B + chr3R_5_8575001 chr3R_8575001 RAL-787 1169 chr3R 8636933 8636965 chr3R 8637236 8637268 20 299 2.5 4.0 3.2 4.8 335 chr3R 8636933 intergenic not near genes chr3R 8637100 intergenic not near genes chr3R 8637268 intergenic not near genes chr3R_20_8635001 chr3R_8635001 RAL-787 1170 chr3R 8707361 8707381 chr3R 8709802 8709822 jockey 11 2441 8.0 8.0 8.0 1.2 2461 chr3R 8707361 intergenic not near genes chr3R 8708592 intergenic not near genes chr3R 8709822 intergenic not near genes chr3R_11_8705001 chr3R_8705001 RAL-787 1171 chr3R 8740249 8740275 chr3R 8740338 8740364 8 88 2.5 3.0 2.8 2.1 115 chr3R 8740249 intron CG9801 - chr3R 8740306 intron CG9801 - chr3R 8740364 intron CG9801 - chr3R_8_8740001 chr3R_8740001 RAL-787 1172 chr3R 8745749 8745773 chr3R 8745860 8745884 4 111 0.0 2.0 1.0 2.0 135 chr3R 8745749 intron CG9801 - chr3R 8745816 intron CG9801 - chr3R 8745884 intron CG9801 - chr3R_4_8745001 chr3R_8745001 RAL-787 1173 chr3R 8894869 8894899 chr3R 8896025 8896053 1360 8 1156 1.0 2.0 1.5 3.2 1184 chr3R 8894869 intron pyd - chr3R 8895461 intron pyd - chr3R 8896053 intron pyd - chr3R_8_8895001 chr3R_8895001 RAL-787 1174 chr3R 8960583 8960603 chr3R 8960660 8960680 6 77 1.0 4.5 2.8 1.6 97 chr3R 8960583 intron CG11966 - chr3R 8960632 intron CG11966 - chr3R 8960680 intron CG11966 - chr3R_6_8960001 chr3R_8960001 RAL-787 1175 chr3R 8997376 8997396 chr3R 8997466 8997486 5 89 2.5 5.0 3.8 1.0 110 chr3R 8997376 intron CG31100 - chr3R 8997431 intron CG31100 - chr3R 8997486 intron CG31100 - chr3R_5_8995001 chr3R_8995001 RAL-787 1176 chr3R 9083142 9083173 chr3R 9083227 9083257 9 84 3.0 4.5 3.8 1.9 115 chr3R 9083142 intron pum - chr3R 9083200 intron pum - chr3R 9083257 intron pum - chr3R_9_9080001 chr3R_9080001 RAL-787 1177 chr3R 9099474 9099480 chr3R 9099556 9099562 4 82 1.5 7.0 4.2 0.8 88 chr3R 9099474 intron pum - chr3R 9099518 intron pum - chr3R 9099562 intron pum - chr3R_4_9095001 chr3R_9095001 RAL-787 1178 chr3R 9101838 9101868 chr3R 9101935 9101964 5 97 1.0 4.0 2.5 1.4 126 chr3R 9101838 intron pum - chr3R 9101901 intron pum - chr3R 9101964 intron pum - chr3R_5_9100001 chr3R_9100001 RAL-787 1179 chr3R 9278788 9278797 chr3R 9284047 9284057 Rt1a 5 5259 9.0 7.5 8.2 0.5 5269 chr3R 9278788 intergenic not near genes chr3R 9281422 intergenic not near genes chr3R 9284057 intergenic not near genes chr3R_5_9280001 chr3R_9280001 RAL-787 1180 chr3R 9319573 9319589 chr3R 9320008 9320024 jockey 6 435 9.0 2.5 5.8 0.9 451 chr3R 9319573 intron CG8861 - chr3R 9319798 intron CG8861 - chr3R 9320024 intron CG8861 - chr3R_6_9315001 chr3R_9315001 RAL-787 1181 chr3R 9379175 9379177 chr3R 9379257 9379259 4 82 0.0 2.0 1.0 2.0 84 chr3R 9379175 intron FER - chr3R 9379217 intron FER - chr3R 9379259 intron FER - chr3R_4_9375001 chr3R_9375001 RAL-787 1182 chr3R 9382817 9382848 chr3R 9382942 9382973 9 124 2.5 4.0 3.2 2.1 156 chr3R 9382817 intron FER - chr3R 9382895 intron FER - chr3R 9382973 intron FER - chr3R_9_9380001 chr3R_9380001 RAL-787 1183 chr3R 9857809 9857837 chr3R 9858249 9858275 8 440 1.5 3.0 2.2 2.5 466 chr3R 9857809 intron Teh1 - chr3R 9858042 intron Teh1 - chr3R 9858275 intron Teh1 - chr3R_8_9855001 chr3R_9855001 RAL-787 1184 chr3R 9936873 9936911 chr3R 9936949 9936987 16 74 3.5 3.5 3.5 3.6 114 chr3R 9936873 intron Glut4EF + chr3R 9936930 intron Glut4EF + chr3R 9936987 intron Glut4EF + chr3R_16_9935001 chr3R_9935001 RAL-787 1185 chr3R 10231806 10231814 chr3R 10237383 10237391 mdg3 4 5577 0.5 5.5 3.0 1.0 5585 chr3R 10231806 intron CG42795 + chr3R 10234598 intron CG42795 + chr3R 10237391 intron CG42795 + chr3R_4_10230001 chr3R_10230001 RAL-787 1186 chr3R 10306953 10306987 chr3R 10312212 10312246 10 5259 31.5 6.5 19.0 0.5 5293 chr3R 10306953 exon CG43143 + chr3R 10309600 exon CG6293 - chr3R 10312246 3` UTR Bruce - chr3R_10_10305001 chr3R_10305001 RAL-787 1187 chr3R 10430674 10430705 chr3R 10430763 10430794 6 88 4.5 4.5 4.5 1.1 120 chr3R 10430674 intergenic not near genes chr3R 10430734 intergenic not near genes chr3R 10430794 intergenic not near genes chr3R_6_10430001 chr3R_10430001 RAL-787 1188 chr3R 10651809 10651840 chr3R 10651907 10651939 10 99 3.5 1.5 2.5 2.9 130 chr3R 10651809 intergenic not near genes chr3R 10651874 intergenic not near genes chr3R 10651939 intergenic not near genes chr3R_10_10650001 chr3R_10650001 RAL-787 1189 chr3R 10723763 10723794 chr3R 10723855 10723883 9 91 3.0 0.5 1.8 3.2 120 chr3R 10723763 intergenic not near genes chr3R 10723823 intergenic not near genes chr3R 10723883 intergenic not near genes chr3R_9_10720001 chr3R_10720001 RAL-787 1190 chr3R 10727646 10727666 chr3R 10727724 10727745 10 76 4.0 4.5 4.2 1.9 99 chr3R 10727646 intergenic not near genes chr3R 10727696 intergenic not near genes chr3R 10727745 intergenic not near genes chr3R_10_10725001 chr3R_10725001 RAL-787 1191 chr3R 10732325 10732343 chr3R 10733197 10733215 10 872 4.0 2.5 3.2 2.4 890 chr3R 10732325 intergenic not near genes chr3R 10732770 intergenic not near genes chr3R 10733215 intergenic not near genes chr3R_10_10730001 chr3R_10730001 RAL-787 1192 chr3R 10904911 10904936 chr3R 10905115 10905140 6 204 2.5 3.5 3.0 1.5 229 chr3R 10904911 intergenic not near genes chr3R 10905026 intergenic not near genes chr3R 10905140 intergenic not near genes chr3R_6_10905001 chr3R_10905001 RAL-787 1193 chr3R 10906846 10906855 chr3R 10906922 10906929 4 75 1.0 5.0 3.0 1.0 83 chr3R 10906846 intergenic not near genes chr3R 10906888 intergenic not near genes chr3R 10906929 intergenic not near genes chr3R_4_10905001 chr3R_10905001 RAL-787 1194 chr3R 10919684 10919716 chr3R 10919761 10919793 9 75 1.5 2.0 1.8 3.2 109 chr3R 10919684 intergenic not near genes chr3R 10919738 intergenic not near genes chr3R 10919793 intergenic not near genes chr3R_9_10915001 chr3R_10915001 RAL-787 1195 chr3R 10920055 10920068 chr3R 10920133 10920146 6 78 1.5 4.5 3.0 1.5 91 chr3R 10920055 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920146 intergenic not near genes chr3R_6_10920001 chr3R_10920001 RAL-787 1196 chr3R 11056899 11056909 chr3R 11056976 11056987 4 78 2.5 0.0 1.2 1.8 88 chr3R 11056899 intergenic not near genes chr3R 11056943 intergenic not near genes chr3R 11056987 intergenic not near genes chr3R_4_11055001 chr3R_11055001 RAL-787 1197 chr3R 11087439 11087458 chr3R 11087515 11087533 6 75 2.5 1.0 1.8 2.1 94 chr3R 11087439 intergenic not near genes chr3R 11087486 intergenic not near genes chr3R 11087533 intergenic not near genes chr3R_6_11085001 chr3R_11085001 RAL-787 1198 chr3R 11099659 11099686 chr3R 11099790 11099815 9 131 4.0 1.5 2.8 2.4 156 chr3R 11099659 intergenic not near genes chr3R 11099737 intergenic not near genes chr3R 11099815 intergenic not near genes chr3R_9_11095001 chr3R_11095001 RAL-787 1199 chr3R 11102329 11102355 chr3R 11102410 11102428 6 79 4.5 4.5 4.5 1.1 99 chr3R 11102329 intergenic not near genes chr3R 11102378 intergenic not near genes chr3R 11102428 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-787 1200 chr3R 11151121 11151149 chr3R 11151316 11151342 6 193 4.5 6.0 5.2 1.0 221 chr3R 11151121 3` UTR Ugt86Di - chr3R 11151232 3` UTR Ugt86Di - chr3R 11151342 3` UTR Ugt86Di - chr3R_6_11150001 chr3R_11150001 RAL-787 1201 chr3R 11197995 11198002 chr3R 11198093 11198093 5 97 6.0 3.5 4.8 0.9 98 chr3R 11197995 intron cu + chr3R 11198044 intron cu + chr3R 11198093 intron cu + chr3R_5_11195001 chr3R_11195001 RAL-787 1202 chr3R 11342560 11342565 chr3R 11342635 11342641 4 75 4.0 3.0 3.5 0.9 81 chr3R 11342560 intron pros + chr3R 11342600 intron pros + chr3R 11342641 intron pros + chr3R_4_11340001 chr3R_11340001 RAL-787 1203 chr3R 11379234 11379269 chr3R 11388389 11388424 roo 12 9154 3.0 4.0 3.5 2.7 9190 chr3R 11379234 intron pros + chr3R 11383829 intron pros + chr3R 11388424 intron pros + chr3R_12_11380001 chr3R_11380001 RAL-787 1204 chr3R 11442337 11442360 chr3R 11442521 11442545 4 185 5.0 2.5 3.8 0.8 208 chr3R 11442337 intron,intron sals -,CG17230 + chr3R 11442441 intron,intron sals -,CG17230 + chr3R 11442545 intron,intron sals -,CG17230 + chr3R_4_11440001 chr3R_11440001 RAL-787 1205 chr3R 11518816 11518848 chr3R 11518907 11518939 15 89 0.5 3.0 1.8 5.4 123 chr3R 11518816 intergenic not near genes chr3R 11518878 intergenic not near genes chr3R 11518939 intergenic not near genes chr3R_15_11515001 chr3R_11515001 RAL-787 1206 chr3R 11664806 11664819 chr3R 11664897 11664911 7 91 4.5 5.0 4.8 1.2 105 chr3R 11664806 intron CG42327 + chr3R 11664858 intron CG42327 + chr3R 11664911 intron CG42327 + chr3R_7_11660001 chr3R_11660001 RAL-787 1207 chr3R 11694728 11694750 chr3R 11694821 11694841 5 93 2.0 3.5 2.8 1.3 113 chr3R 11694728 intergenic Fer3 - chr3R 11694784 intergenic Fer3 - chr3R 11694841 intergenic not near genes chr3R_5_11690001 chr3R_11690001 RAL-787 1208 chr3R 11734162 11734190 chr3R 11734281 11734307 11 117 2.0 4.0 3.0 2.8 145 chr3R 11734162 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734307 intergenic not near genes chr3R_11_11730001 chr3R_11730001 RAL-787 1209 chr3R 11740434 11740468 chr3R 11743541 11743575 31 3108 54.0 38.0 46.0 0.7 3141 chr3R 11740434 exon Blm - chr3R 11742004 5` UTR CG14722 + chr3R 11743575 exon CG14722 + chr3R_31_11740001 chr3R_11740001 RAL-787 1210 chr3R 11841066 11841098 chr3R 11846257 11846289 BS 14 5189 4.5 4.5 4.5 2.5 5223 chr3R 11841066 intron CG6959 - chr3R 11843678 intron CG6959 - chr3R 11846289 intron CG6959 - chr3R_14_11840001 chr3R_11840001 RAL-787 1211 chr3R 11853771 11853800 chr3R 11853876 11853900 7 104 2.5 3.0 2.8 1.8 129 chr3R 11853771 intron CG6959 - chr3R 11853836 intron CG6959 - chr3R 11853900 intron CG6959 - chr3R_7_11850001 chr3R_11850001 RAL-787 1212 chr3R 12022886 12022911 chr3R 12025063 12025074 pogo 9 2175 3.0 4.0 3.5 2.0 2188 chr3R 12022886 intergenic not near genes chr3R 12023980 intergenic not near genes chr3R 12025074 intergenic not near genes chr3R_9_12020001 chr3R_12020001 RAL-787 1213 chr3R 12081997 12082026 chr3R 12082073 12082102 6 76 1.0 2.5 1.8 2.1 105 chr3R 12081997 intron CG14741 - chr3R 12082050 intron CG14741 - chr3R 12082102 intron CG14741 - chr3R_6_12080001 chr3R_12080001 RAL-787 1214 chr3R 12111904 12111919 chr3R 12111978 12111994 9 75 0.0 1.0 0.5 6.0 90 chr3R 12111904 intergenic dpr17 + chr3R 12111949 intergenic not near genes chr3R 12111994 intergenic not near genes chr3R_9_12110001 chr3R_12110001 RAL-787 1215 chr3R 12134964 12134981 chr3R 12135101 12135116 8 137 2.0 0.0 1.0 4.0 152 chr3R 12134964 intergenic not near genes chr3R 12135040 intergenic not near genes chr3R 12135116 intergenic not near genes chr3R_8_12135001 chr3R_12135001 RAL-787 1216 chr3R 12154041 12154059 chr3R 12154470 12154485 6 430 17.5 14.0 15.8 0.4 444 chr3R 12154041 intron dpr15 - chr3R 12154263 intron dpr15 - chr3R 12154485 intron dpr15 - chr3R_6_12150001 chr3R_12150001 RAL-787 1217 chr3R 12175025 12175038 chr3R 12175382 12175403 5 360 3.0 1.0 2.0 1.7 378 chr3R 12175025 intergenic not near genes chr3R 12175214 intergenic not near genes chr3R 12175403 intergenic not near genes chr3R_5_12175001 chr3R_12175001 RAL-787 1218 chr3R 12267869 12267887 chr3R 12267949 12267967 4 80 1.5 1.5 1.5 1.6 98 chr3R 12267869 intron svp + chr3R 12267918 intron svp + chr3R 12267967 intron svp + chr3R_4_12265001 chr3R_12265001 RAL-787 1219 chr3R 12392894 12392900 chr3R 12392992 12393000 5 98 3.5 11.0 7.2 0.6 106 chr3R 12392894 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12392947 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R 12393000 intron,5` UTR,3` UTR CG34402 +,CG10096 -,CG10097 - chr3R_5_12390001 chr3R_12390001 RAL-787 1220 chr3R 12599374 12599408 chr3R 12599457 12599476 4 78 0.5 1.5 1.0 2.0 102 chr3R 12599374 intergenic not near genes chr3R 12599425 intergenic not near genes chr3R 12599476 intergenic not near genes chr3R_4_12595001 chr3R_12595001 RAL-787 1221 chr3R 12665866 12665894 chr3R 12665937 12665970 10 74 2.0 3.5 2.8 2.6 104 chr3R 12665866 intron CG14395 + chr3R 12665918 intron CG14395 + chr3R 12665970 intron CG14395 + chr3R_10_12665001 chr3R_12665001 RAL-787 1222 chr3R 12735800 12735821 chr3R 12735898 12735919 5 95 5.5 3.0 4.2 1.0 119 chr3R 12735800 intergenic not near genes chr3R 12735860 intergenic not near genes chr3R 12735919 intergenic not near genes chr3R_5_12735001 chr3R_12735001 RAL-787 1223 chr3R 12763121 12763155 chr3R 12763198 12763232 8 76 0.0 1.5 0.8 4.4 111 chr3R 12763121 intron beat-Vc - chr3R 12763176 intron beat-Vc - chr3R 12763232 intron beat-Vc - chr3R_8_12760001 chr3R_12760001 RAL-787 1224 chr3R 12819031 12819049 chr3R 12819112 12819132 8 82 2.5 2.0 2.2 2.5 101 chr3R 12819031 intergenic not near genes chr3R 12819082 intergenic not near genes chr3R 12819132 intergenic not near genes chr3R_8_12815001 chr3R_12815001 RAL-787 1225 chr3R 12825835 12825855 chr3R 12825908 12825935 8 76 2.5 4.5 3.5 1.8 100 chr3R 12825835 intergenic not near genes chr3R 12825885 intergenic not near genes chr3R 12825935 intergenic not near genes chr3R_8_12825001 chr3R_12825001 RAL-787 1226 chr3R 12864569 12864584 chr3R 12865054 12865069 roo 4 485 0.0 2.0 1.0 2.0 500 chr3R 12864569 intergenic not near genes chr3R 12864819 intergenic not near genes chr3R 12865069 intergenic not near genes chr3R_4_12860001 chr3R_12860001 RAL-787 1227 chr3R 12866492 12866515 chr3R 12866642 12866666 7 151 2.5 2.5 2.5 2.0 174 chr3R 12866492 intergenic not near genes chr3R 12866579 intergenic not near genes chr3R 12866666 intergenic not near genes chr3R_7_12865001 chr3R_12865001 RAL-787 1228 chr3R 12885103 12885123 chr3R 12885210 12885229 4 107 6.5 1.5 4.0 0.8 126 chr3R 12885103 intergenic not near genes chr3R 12885166 intergenic not near genes chr3R 12885229 intergenic not near genes chr3R_4_12885001 chr3R_12885001 RAL-787 1229 chr3R 12920157 12920172 chr3R 12925360 12925375 copia 4 5202 3.5 4.0 3.8 0.8 5218 chr3R 12920157 intron beat-Vb + chr3R 12922766 intron beat-Vb + chr3R 12925375 intron beat-Vb + chr3R_4_12920001 chr3R_12920001 RAL-787 1230 chr3R 12920173 12920176 chr3R 12925355 12925374 copia 4 5196 3.0 3.5 3.2 1.0 5201 chr3R 12920173 intron beat-Vb + chr3R 12922774 intron beat-Vb + chr3R 12925374 intron beat-Vb + chr3R_4_12920001 chr3R_12920001 RAL-787 1231 chr3R 12947288 12947319 chr3R 12947450 12947480 7 158 1.5 2.5 2.0 2.3 192 chr3R 12947288 intergenic not near genes chr3R 12947384 intergenic not near genes chr3R 12947480 intergenic not near genes chr3R_7_12945001 chr3R_12945001 RAL-787 1232 chr3R 12972555 12972583 chr3R 12972694 12972722 6 138 2.0 1.5 1.8 2.1 167 chr3R 12972555 intron CG7381 - chr3R 12972638 intron CG7381 - chr3R 12972722 intron CG7381 - chr3R_6_12970001 chr3R_12970001 RAL-787 1233 chr3R 13075359 13075390 chr3R 13075440 13075471 9 81 3.0 1.0 2.0 3.0 112 chr3R 13075359 intron sim + chr3R 13075415 intron sim + chr3R 13075471 intron sim + chr3R_9_13075001 chr3R_13075001 RAL-787 1234 chr3R 13143047 13143065 chr3R 13148621 13148641 mdg3 5 5575 5.0 6.5 5.8 0.7 5594 chr3R 13143047 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145844 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148641 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_5_13145001 chr3R_13145001 RAL-787 1235 chr3R 13314104 13314118 chr3R 13318892 13318906 Doc 4 4788 0.5 6.0 3.2 1.0 4802 chr3R 13314104 intergenic not near genes chr3R 13316505 intergenic not near genes chr3R 13318906 intergenic CG45080 - chr3R_4_13315001 chr3R_13315001 RAL-787 1236 chr3R 13349012 13349033 chr3R 13349087 13349107 4 75 0.0 2.0 1.0 2.0 95 chr3R 13349012 intergenic not near genes chr3R 13349060 intergenic not near genes chr3R 13349107 intergenic not near genes chr3R_4_13345001 chr3R_13345001 RAL-787 1237 chr3R 13428890 13428906 chr3R 13429003 13429020 4 113 8.5 18.5 13.5 0.3 130 chr3R 13428890 3` UTR yrt - chr3R 13428955 3` UTR yrt - chr3R 13429020 3` UTR yrt - chr3R_4_13425001 chr3R_13425001 RAL-787 1238 chr3R 13435387 13435413 chr3R 13435562 13435588 6 175 1.0 1.0 1.0 3.0 201 chr3R 13435387 intergenic yrt - chr3R 13435488 intergenic not near genes chr3R 13435588 intergenic not near genes chr3R_6_13435001 chr3R_13435001 RAL-787 1239 chr3R 13603058 13603356 chr3R 13603149 13603448 9 91 3.0 1.5 2.2 2.8 390 chr3R 13603058 intergenic not near genes chr3R 13603253 intergenic not near genes chr3R 13603448 intergenic not near genes chr3R_9_13600001 chr3R_13600001 RAL-787 1240 chr3R 13603359 13603369 chr3R 13603450 13603461 4 91 2.0 3.0 2.5 1.1 102 chr3R 13603359 intergenic not near genes chr3R 13603410 intergenic not near genes chr3R 13603461 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-787 1241 chr3R 13604063 13604092 chr3R 13604298 13604327 6 235 0.5 2.0 1.2 2.7 264 chr3R 13604063 intergenic not near genes chr3R 13604195 intergenic not near genes chr3R 13604327 intergenic not near genes chr3R_6_13600001 chr3R_13600001 RAL-787 1242 chr3R 13672942 13672951 chr3R 13673019 13673029 6 78 7.0 5.0 6.0 0.9 87 chr3R 13672942 intron Task6 - chr3R 13672986 intron Task6 - chr3R 13673029 intron Task6 - chr3R_6_13670001 chr3R_13670001 RAL-787 1243 chr3R 13672952 13672971 chr3R 13673018 13673049 9 75 3.5 5.0 4.2 1.7 97 chr3R 13672952 intron Task6 - chr3R 13673000 intron Task6 - chr3R 13673049 intron Task6 - chr3R_9_13670001 chr3R_13670001 RAL-787 1244 chr3R 13693028 13693028 chr3R 21907534 21907536 10 8214507 13.0 22.5 17.8 0.5 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_10_17800001 chr3R_17800001 RAL-787 1245 chr3R 13736058 13736081 chr3R 13736148 13736171 7 85 2.5 2.0 2.2 2.2 113 chr3R 13736058 intron CG34383 + chr3R 13736114 intron CG34383 + chr3R 13736171 intron CG34383 + chr3R_7_13735001 chr3R_13735001 RAL-787 1246 chr3R 13896067 13896080 chr3R 13896557 13896568 4 490 2.0 0.0 1.0 2.0 501 chr3R 13896067 intergenic not near genes chr3R 13896318 intergenic not near genes chr3R 13896568 intergenic not near genes chr3R_4_13895001 chr3R_13895001 RAL-787 1247 chr3R 13915692 13915708 chr3R 13916029 13916049 7 339 3.5 5.0 4.2 1.3 357 chr3R 13915692 intergenic not near genes chr3R 13915870 intergenic not near genes chr3R 13916049 intergenic not near genes chr3R_7_13915001 chr3R_13915001 RAL-787 1248 chr3R 13916315 13916342 chr3R 13916393 13916427 14 79 3.5 2.0 2.8 3.7 112 chr3R 13916315 intergenic not near genes chr3R 13916371 intergenic not near genes chr3R 13916427 intergenic not near genes chr3R_14_13915001 chr3R_13915001 RAL-787 1249 chr3R 13949248 13949253 chr3R 13949326 13949330 5 78 0.0 5.0 2.5 1.4 82 chr3R 13949248 3` UTR CG31517 + chr3R 13949289 3` UTR CG31517 + chr3R 13949330 intron CG31517 + chr3R_5_13945001 chr3R_13945001 RAL-787 1250 chr3R 13975376 13975390 chr3R 13975455 13975470 7 80 0.5 2.5 1.5 2.8 94 chr3R 13975376 intron rdx - chr3R 13975423 intron rdx - chr3R 13975470 intron rdx - chr3R_7_13975001 chr3R_13975001 RAL-787 1251 chr3R 14037166 14037180 chr3R 14043061 14043077 6 5893 12.0 23.0 17.5 0.3 5911 chr3R 14037166 intergenic not near genes chr3R 14040122 intergenic not near genes chr3R 14043077 intergenic not near genes chr3R_6_14040001 chr3R_14040001 RAL-787 1252 chr3R 14058127 14058151 chr3R 14058247 14058271 6 120 3.0 1.0 2.0 2.0 144 chr3R 14058127 intron foxo + chr3R 14058199 intron foxo + chr3R 14058271 intron foxo + chr3R_6_14055001 chr3R_14055001 RAL-787 1253 chr3R 14062166 14062200 chr3R 14062240 14062276 8 75 0.0 1.5 0.8 4.4 110 chr3R 14062166 intron foxo + chr3R 14062221 intron foxo + chr3R 14062276 intron foxo + chr3R_8_14060001 chr3R_14060001 RAL-787 1254 chr3R 14117439 14117470 chr3R 14117515 14117546 5 76 1.5 2.5 2.0 1.7 107 chr3R 14117439 intron Kif19A - chr3R 14117492 intron Kif19A - chr3R 14117546 intron Kif19A - chr3R_5_14115001 chr3R_14115001 RAL-787 1255 chr3R 14257354 14257367 chr3R 14257443 14257463 4 94 1.0 6.0 3.5 0.9 109 chr3R 14257354 intron Aats-met - chr3R 14257408 intron Aats-met - chr3R 14257463 intron Aats-met - chr3R_4_14255001 chr3R_14255001 RAL-787 1256 chr3R 14313625 14313651 chr3R 14313721 14313747 8 94 1.5 3.5 2.5 2.3 122 chr3R 14313625 intron CG31321 + chr3R 14313686 intron CG31321 + chr3R 14313747 intron CG31321 + chr3R_8_14310001 chr3R_14310001 RAL-787 1257 chr3R 14363722 14363753 chr3R 14363803 14363835 12 80 3.0 2.0 2.5 3.4 113 chr3R 14363722 intron NK7.1 - chr3R 14363778 intron NK7.1 - chr3R 14363835 intron NK7.1 - chr3R_12_14360001 chr3R_14360001 RAL-787 1258 chr3R 14527403 14527412 chr3R 14527480 14527488 5 77 5.0 6.0 5.5 0.8 85 chr3R 14527403 intron Pde6 - chr3R 14527446 intron Pde6 - chr3R 14527488 intron Pde6 - chr3R_5_14525001 chr3R_14525001 RAL-787 1259 chr3R 14840946 14840973 chr3R 14841032 14841059 7 81 3.0 6.0 4.5 1.3 113 chr3R 14840946 intron btsz - chr3R 14841002 intron btsz - chr3R 14841059 intron btsz - chr3R_7_14840001 chr3R_14840001 RAL-787 1260 chr3R 14971343 14971368 chr3R 14971442 14971468 9 101 8.0 3.5 5.8 1.3 125 chr3R 14971343 intergenic not near genes chr3R 14971406 intergenic not near genes chr3R 14971468 intergenic not near genes chr3R_9_14970001 chr3R_14970001 RAL-787 1261 chr3R 15009145 15009177 chr3R 15009241 15009256 9 89 1.0 1.0 1.0 4.5 111 chr3R 15009145 intergenic not near genes chr3R 15009200 intergenic not near genes chr3R 15009256 intergenic not near genes chr3R_9_15005001 chr3R_15005001 RAL-787 1262 chr3R 15071186 15071219 chr3R 15071311 15071344 5 125 2.0 1.5 1.8 1.8 158 chr3R 15071186 intron dpr9 - chr3R 15071265 intron dpr9 - chr3R 15071344 intron dpr9 - chr3R_5_15070001 chr3R_15070001 RAL-787 1263 chr3R 15079811 15079836 chr3R 15080051 15080076 pogo 6 240 0.5 1.0 0.8 3.3 265 chr3R 15079811 3` UTR CG6966 - chr3R 15079944 3` UTR CG6966 - chr3R 15080076 3` UTR CG6966 - chr3R_6_15075001 chr3R_15075001 RAL-787 1264 chr3R 15160566 15160587 chr3R 15160663 15160685 7 98 4.0 4.0 4.0 1.4 119 chr3R 15160566 intron Gyc88E + chr3R 15160626 intron Gyc88E + chr3R 15160685 intron Gyc88E + chr3R_7_15160001 chr3R_15160001 RAL-787 1265 chr3R 15162548 15162566 chr3R 15167315 15167333 F-element 7 4766 8.5 2.5 5.5 1.1 4785 chr3R 15162548 intron Gyc88E + chr3R 15164940 intron Gyc88E + chr3R 15167333 intron Gyc88E + chr3R_7_15160001 chr3R_15160001 RAL-787 1266 chr3R 15184535 15184568 chr3R 15184617 15184650 9 81 4.0 4.0 4.0 1.8 115 chr3R 15184535 intron Gyc88E + chr3R 15184592 intron Gyc88E + chr3R 15184650 intron Gyc88E + chr3R_9_15180001 chr3R_15180001 RAL-787 1267 chr3R 15286987 15286988 chr3R 21907534 21907536 7 6620548 12.5 22.5 17.5 0.4 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_7_18595001 chr3R_18595001 RAL-787 1268 chr3R 15416260 15416280 chr3R 15416339 15416360 6 80 4.0 4.0 4.0 1.2 100 chr3R 15416260 3` UTR Atx2 + chr3R 15416310 3` UTR Atx2 + chr3R 15416360 3` UTR Atx2 + chr3R_6_15415001 chr3R_15415001 RAL-787 1269 chr3R 15566419 15566448 chr3R 15566503 15566532 5 84 2.0 4.0 3.0 1.2 113 chr3R 15566419 intergenic not near genes chr3R 15566476 intergenic not near genes chr3R 15566532 intergenic not near genes chr3R_5_15565001 chr3R_15565001 RAL-787 1270 chr3R 15601166 15601196 chr3R 15608688 15608714 412 16 7520 5.0 6.0 5.5 2.5 7548 chr3R 15601166 intergenic not near genes chr3R 15604940 intergenic not near genes chr3R 15608714 intergenic not near genes chr3R_16_15600001 chr3R_15600001 RAL-787 1271 chr3R 15608788 15608814 chr3R 15609016 15609043 16 228 7.5 2.0 4.8 2.8 255 chr3R 15608788 intergenic not near genes chr3R 15608916 intergenic not near genes chr3R 15609043 intergenic not near genes chr3R_16_15605001 chr3R_15605001 RAL-787 1272 chr3R 15646790 15646797 chr3R 15646873 15646880 5 83 2.0 2.0 2.0 1.7 90 chr3R 15646790 intergenic not near genes chr3R 15646835 intergenic not near genes chr3R 15646880 intergenic not near genes chr3R_5_15645001 chr3R_15645001 RAL-787 1273 chr3R 15691303 15691330 chr3R 15691390 15691416 6 87 0.0 1.5 0.8 3.3 113 chr3R 15691303 intergenic not near genes chr3R 15691360 intergenic not near genes chr3R 15691416 intergenic not near genes chr3R_6_15690001 chr3R_15690001 RAL-787 1274 chr3R 15942049 15942083 chr3R 15942806 15942839 12 754 2.5 3.5 3.0 3.0 790 chr3R 15942049 intron Sap47 + chr3R 15942444 intron Sap47 + chr3R 15942839 intron Sap47 + chr3R_12_15940001 chr3R_15940001 RAL-787 1275 chr3R 16011041 16011075 chr3R 16011158 16011194 9 117 1.5 3.5 2.5 2.6 153 chr3R 16011041 intron GATAe + chr3R 16011118 intron GATAe + chr3R 16011194 intron GATAe + chr3R_9_16010001 chr3R_16010001 RAL-787 1276 chr3R 16033416 16033429 chr3R 16033497 16033510 6 81 1.0 3.5 2.2 1.9 94 chr3R 16033416 intron pnr + chr3R 16033463 intron pnr + chr3R 16033510 intron pnr + chr3R_6_16030001 chr3R_16030001 RAL-787 1277 chr3R 16225087 16225115 chr3R 16225172 16225199 5 85 2.0 1.5 1.8 1.8 112 chr3R 16225087 intergenic not near genes chr3R 16225143 intergenic not near genes chr3R 16225199 intergenic tara + chr3R_5_16225001 chr3R_16225001 RAL-787 1278 chr3R 16400551 16400571 chr3R 16400672 16400692 5 121 1.5 2.5 2.0 1.7 141 chr3R 16400551 intron ss - chr3R 16400622 intron ss - chr3R 16400692 intron ss - chr3R_5_16400001 chr3R_16400001 RAL-787 1279 chr3R 16582908 16582919 chr3R 16582987 16582988 4 76 3.0 5.5 4.2 0.8 80 chr3R 16582908 intron Scp2 - chr3R 16582948 intron Scp2 - chr3R 16582988 intron Scp2 - chr3R_4_16580001 chr3R_16580001 RAL-787 1280 chr3R 16714602 16714631 chr3R 16715003 16715032 6 401 3.5 2.5 3.0 1.5 430 chr3R 16714602 intron Ubx - chr3R 16714817 intron Ubx - chr3R 16715032 intron Ubx - chr3R_6_16710001 chr3R_16710001 RAL-787 1281 chr3R 16756321 16756350 chr3R 16762512 16762531 diver 7 6188 3.0 1.5 2.2 2.2 6210 chr3R 16756321 intron bxd - chr3R 16759426 intron bxd - chr3R 16762531 intron bxd - chr3R_7_16755001 chr3R_16755001 RAL-787 1282 chr3R 16889963 16889988 chr3R 16890040 16890065 6 74 2.0 3.0 2.5 1.7 102 chr3R 16889963 intron iab-8 - chr3R 16890014 intron iab-8 - chr3R 16890065 intron iab-8 - chr3R_6_16890001 chr3R_16890001 RAL-787 1283 chr3R 17012963 17012983 chr3R 17013039 17013059 8 76 2.5 3.0 2.8 2.1 96 chr3R 17012963 intergenic CG8907 + chr3R 17013011 intergenic CG8907 + chr3R 17013059 intergenic not near genes chr3R_8_17010001 chr3R_17010001 RAL-787 1284 chr3R 17290451 17290466 chr3R 17290537 17290550 4 86 3.0 2.5 2.8 1.1 99 chr3R 17290451 intergenic not near genes chr3R 17290500 intergenic not near genes chr3R 17290550 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-787 1285 chr3R 17294673 17294681 chr3R 17295101 17295106 BS 4 427 5.5 3.0 4.2 0.8 433 chr3R 17294673 intergenic not near genes chr3R 17294890 intergenic not near genes chr3R 17295106 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-787 1286 chr3R 17294683 17294699 chr3R 17295088 17295127 BS 4 422 3.5 2.0 2.8 1.1 444 chr3R 17294683 intergenic not near genes chr3R 17294905 intergenic not near genes chr3R 17295127 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-787 1287 chr3R 17439435 17439462 chr3R 17439737 17439777 4 312 2.0 0.0 1.0 2.0 342 chr3R 17439435 intron,intron CG5873 +,CG14331 - chr3R 17439606 intron,intron CG5873 +,CG14331 - chr3R 17439777 intron,intron CG5873 +,CG14331 - chr3R_4_17435001 chr3R_17435001 RAL-787 1288 chr3R 17461207 17461231 chr3R 17461289 17461308 11 81 0.0 2.5 1.2 5.0 101 chr3R 17461207 intergenic not near genes chr3R 17461258 intergenic not near genes chr3R 17461308 intergenic not near genes chr3R_11_17460001 chr3R_17460001 RAL-787 1289 chr3R 17531905 17531914 chr3R 17531982 17531991 4 77 0.5 7.0 3.8 0.8 86 chr3R 17531905 intergenic CG5823 - chr3R 17531948 intergenic CG5823 - chr3R 17531991 intergenic CG5823 - chr3R_4_17530001 chr3R_17530001 RAL-787 1290 chr3R 17591293 17591320 chr3R 17591726 17591743 F-element 6 422 3.5 3.5 3.5 1.3 450 chr3R 17591293 intergenic not near genes chr3R 17591518 intergenic not near genes chr3R 17591743 intergenic not near genes chr3R_6_17590001 chr3R_17590001 RAL-787 1291 chr3R 17638317 17638335 chr3R 17638803 17638821 roo 5 486 2.5 3.0 2.8 1.3 504 chr3R 17638317 intron CG43175 + chr3R 17638569 intron CG43175 + chr3R 17638821 intron,intron CG43175 +,CR45222 + chr3R_5_17635001 chr3R_17635001 RAL-787 1292 chr3R 17714680 17714699 chr3R 17714743 17714778 5 72 5.5 4.0 4.8 0.9 98 chr3R 17714680 intron osa - chr3R 17714729 intron osa - chr3R 17714778 intron osa - chr3R_5_17710001 chr3R_17710001 RAL-787 1293 chr3R 17792345 17792379 chr3R 17792678 17792688 13 330 2.5 3.0 2.8 3.4 343 chr3R 17792345 intron CG43102 - chr3R 17792516 intron CG43102 - chr3R 17792688 intron CG43102 - chr3R_13_17790001 chr3R_17790001 RAL-787 1294 chr3R 17895371 17895377 chr3R 17895461 17895468 4 91 2.5 4.0 3.2 1.0 97 chr3R 17895371 intron Rim - chr3R 17895420 intron Rim - chr3R 17895468 intron Rim - chr3R_4_17895001 chr3R_17895001 RAL-787 1295 chr3R 17925862 17925886 chr3R 17927326 17927353 hobo 8 1466 3.5 5.0 4.2 1.5 1491 chr3R 17925862 intron cpo + chr3R 17926608 intron cpo + chr3R 17927353 intron cpo + chr3R_8_17925001 chr3R_17925001 RAL-787 1296 chr3R 17978751 17978783 chr3R 17978831 17978861 14 80 2.0 2.0 2.0 4.7 110 chr3R 17978751 intron cpo + chr3R 17978806 intron cpo + chr3R 17978861 intron cpo + chr3R_14_17975001 chr3R_17975001 RAL-787 1297 chr3R 18032792 18032803 chr3R 18040462 18040476 opus 6 7671 0.5 1.5 1.0 3.0 7684 chr3R 18032792 intergenic not near genes chr3R 18036634 intergenic not near genes chr3R 18040476 intergenic not near genes chr3R_6_18035001 chr3R_18035001 RAL-787 1298 chr3R 18068005 18068024 chr3R 18068087 18068106 4 82 0.0 2.0 1.0 2.0 101 chr3R 18068005 intergenic not near genes chr3R 18068056 intergenic not near genes chr3R 18068106 intergenic not near genes chr3R_4_18065001 chr3R_18065001 RAL-787 1299 chr3R 18122890 18122897 chr3R 18122967 18122974 4 77 0.0 0.0 0.0 4.0 84 chr3R 18122890 intron sr + chr3R 18122932 intron sr + chr3R 18122974 intron sr + chr3R_4_18120001 chr3R_18120001 RAL-787 1300 chr3R 18291852 18291882 chr3R 18291935 18291965 5 83 0.5 0.5 0.5 3.3 113 chr3R 18291852 intron l(3)05822 - chr3R 18291908 intron l(3)05822 - chr3R 18291965 intron l(3)05822 - chr3R_5_18290001 chr3R_18290001 RAL-787 1301 chr3R 18342038 18342045 chr3R 18342090 18342123 5 68 1.0 1.5 1.2 2.3 85 chr3R 18342038 intron CG15803 - chr3R 18342080 intron CG15803 - chr3R 18342123 intron CG15803 - chr3R_5_18340001 chr3R_18340001 RAL-787 1302 chr3R 18379626 18379659 chr3R 18379932 18379965 7 306 2.5 4.0 3.2 1.7 339 chr3R 18379626 intron CG7675 - chr3R 18379796 intron CG7675 - chr3R 18379965 intron CG7675 - chr3R_7_18375001 chr3R_18375001 RAL-787 1303 chr3R 18394493 18394504 chr3R 18394570 18394581 5 77 2.0 4.5 3.2 1.2 88 chr3R 18394493 intron Vha100-2 - chr3R 18394537 intron Vha100-2 - chr3R 18394581 intron Vha100-2 - chr3R_5_18390001 chr3R_18390001 RAL-787 1304 chr3R 18501590 18501629 chr3R 18501671 18501707 13 81 2.0 3.0 2.5 3.7 117 chr3R 18501590 intron fru - chr3R 18501648 intron fru - chr3R 18501707 intron fru - chr3R_13_18500001 chr3R_18500001 RAL-787 1305 chr3R 18606509 18606526 chr3R 18610741 18610758 F-element 4 4232 3.0 2.5 2.8 1.1 4249 chr3R 18606509 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610758 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-787 1306 chr3R 18695762 18695769 chr3R 18695847 18695854 4 85 4.0 0.0 2.0 1.3 92 chr3R 18695762 3` UTR CG34282 + chr3R 18695808 intergenic CG34282 + chr3R 18695854 intergenic CG34282 + chr3R_4_18695001 chr3R_18695001 RAL-787 1307 chr3R 18730024 18730037 chr3R 18730100 18730113 6 75 3.5 2.5 3.0 1.5 89 chr3R 18730024 intron Cha + chr3R 18730068 intron Cha + chr3R 18730113 exon Cha + chr3R_6_18730001 chr3R_18730001 RAL-787 1308 chr3R 18766783 18766810 chr3R 18766853 18766877 15 75 3.5 2.0 2.8 3.9 94 chr3R 18766783 intron CG7720 - chr3R 18766830 intron CG7720 - chr3R 18766877 intron CG7720 - chr3R_15_18765001 chr3R_18765001 RAL-787 1309 chr3R 18781701 18781723 chr3R 18781774 18781798 6 72 2.5 1.5 2.0 2.0 97 chr3R 18781701 intron CG7720 - chr3R 18781750 intron CG7720 - chr3R 18781798 intron CG7720 - chr3R_6_18780001 chr3R_18780001 RAL-787 1310 chr3R 18812084 18812106 chr3R 18812162 18812184 9 77 5.0 5.0 5.0 1.5 100 chr3R 18812084 intron CG18208 - chr3R 18812134 intron CG18208 - chr3R 18812184 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-787 1311 chr3R 18817507 18817539 chr3R 18817605 18817637 11 98 1.0 2.0 1.5 4.4 130 chr3R 18817507 intron CG18208 - chr3R 18817572 intron CG18208 - chr3R 18817637 intron CG18208 - chr3R_11_18815001 chr3R_18815001 RAL-787 1312 chr3R 18839817 18839829 chr3R 18839898 18839913 5 83 9.5 1.5 5.5 0.8 96 chr3R 18839817 intron CG18208 - chr3R 18839865 intron CG18208 - chr3R 18839913 intron CG18208 - chr3R_5_18835001 chr3R_18835001 RAL-787 1313 chr3R 18967131 18967161 chr3R 18967324 18967353 4 193 28.0 24.0 26.0 0.1 222 chr3R 18967131 intron,intron CG42613 +,CG43732 + chr3R 18967242 intron,intron CG42613 +,CG43732 + chr3R 18967353 intron,intron CG42613 +,CG43732 + chr3R_4_18965001 chr3R_18965001 RAL-787 1314 chr3R 19106822 19106844 chr3R 19106911 19106913 7 86 3.5 0.0 1.8 2.5 91 chr3R 19106822 intron CG6040 + chr3R 19106868 intron CG6040 + chr3R 19106913 intron CG6040 + chr3R_7_19105001 chr3R_19105001 RAL-787 1315 chr3R 19117063 19117090 chr3R 19117206 19117209 8 139 6.0 0.0 3.0 2.0 146 chr3R 19117063 intron CG6040 + chr3R 19117136 intron CG6040 + chr3R 19117209 intron CG6040 + chr3R_8_19115001 chr3R_19115001 RAL-787 1316 chr3R 19248873 19248898 chr3R 19248952 19248978 5 78 3.0 0.0 1.5 2.0 105 chr3R 19248873 intergenic not near genes chr3R 19248926 intergenic not near genes chr3R 19248978 intergenic not near genes chr3R_5_19245001 chr3R_19245001 RAL-787 1317 chr3R 19320584 19320617 chr3R 19320669 19320705 9 88 3.0 2.0 2.5 2.6 121 chr3R 19320584 intron Dl - chr3R 19320644 intron Dl - chr3R 19320705 intron Dl - chr3R_9_19320001 chr3R_19320001 RAL-787 1318 chr3R 19438371 19438401 chr3R 19438454 19438484 6 82 1.0 2.5 1.8 2.1 113 chr3R 19438371 intron CG31221 + chr3R 19438428 intron CG31221 + chr3R 19438484 intron CG31221 + chr3R_6_19435001 chr3R_19435001 RAL-787 1319 chr3R 19505938 19505966 chr3R 19506035 19506065 9 98 1.5 2.0 1.8 3.2 127 chr3R 19505938 intron Dys + chr3R 19506002 intron Dys + chr3R 19506065 intron Dys + chr3R_9_19505001 chr3R_19505001 RAL-787 1320 chr3R 19513941 19513961 chr3R 19514097 19514117 4 156 1.0 2.0 1.5 1.6 176 chr3R 19513941 intron Dys + chr3R 19514029 intron Dys + chr3R 19514117 intron Dys + chr3R_4_19510001 chr3R_19510001 RAL-787 1321 chr3R 19561840 19561853 chr3R 19561901 19561929 8 71 4.0 4.5 4.2 1.5 89 chr3R 19561840 intron Dys + chr3R 19561884 intron Dys + chr3R 19561929 intron Dys + chr3R_8_19560001 chr3R_19560001 RAL-787 1322 chr3R 19602570 19602592 chr3R 19602650 19602671 6 80 1.0 0.0 0.5 4.0 101 chr3R 19602570 exon CG7333 + chr3R 19602620 3` UTR CG7333 + chr3R 19602671 intergenic CG7333 + chr3R_6_19600001 chr3R_19600001 RAL-787 1323 chr3R 19750054 19750071 chr3R 19750128 19750151 6 79 1.5 2.0 1.8 2.1 97 chr3R 19750054 intron GluClalpha + chr3R 19750102 intron GluClalpha + chr3R 19750151 intron GluClalpha + chr3R_6_19750001 chr3R_19750001 RAL-787 1324 chr3R 19783191 19783211 chr3R 19783279 19783299 6 87 0.5 1.5 1.0 3.0 108 chr3R 19783191 intergenic CG11407 +,CG11453 + chr3R 19783245 intergenic CG11407 +,CG11453 + chr3R 19783299 intergenic CG11407 +,CG11453 + chr3R_6_19780001 chr3R_19780001 RAL-787 1325 chr3R 19848284 19848293 chr3R 19848391 19848400 4 107 0.0 1.5 0.8 2.2 116 chr3R 19848284 intron CG4662 + chr3R 19848342 intron CG4662 + chr3R 19848400 intron CG4662 + chr3R_4_19845001 chr3R_19845001 RAL-787 1326 chr3R 19953950 19953968 chr3R 19954026 19954026 5 72 8.0 4.5 6.2 0.7 76 chr3R 19953950 intron Hs6st - chr3R 19953988 intron Hs6st - chr3R 19954026 intron Hs6st - chr3R_5_19950001 chr3R_19950001 RAL-787 1327 chr3R 19957272 19957295 chr3R 19957343 19957359 6 65 2.0 3.5 2.8 1.6 87 chr3R 19957272 intron Hs6st - chr3R 19957316 intron Hs6st - chr3R 19957359 intron Hs6st - chr3R_6_19955001 chr3R_19955001 RAL-787 1328 chr3R 20109551 20109570 chr3R 20114757 20114776 copia 5 5206 0.5 3.0 1.8 1.8 5225 chr3R 20109551 intergenic not near genes chr3R 20112164 intergenic not near genes chr3R 20114776 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-787 1329 chr3R 20146256 20146290 chr3R 20146368 20146402 10 108 3.0 4.5 3.8 2.1 146 chr3R 20146256 intergenic not near genes chr3R 20146329 intergenic not near genes chr3R 20146402 intergenic not near genes chr3R_10_20145001 chr3R_20145001 RAL-787 1330 chr3R 20156705 20156716 chr3R 20165858 20165879 roo 4 9160 4.0 5.0 4.5 0.7 9174 chr3R 20156705 intergenic not near genes chr3R 20161292 intergenic not near genes chr3R 20165879 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-787 1331 chr3R 20195688 20195721 chr3R 20195765 20195797 10 74 2.0 3.5 2.8 2.6 109 chr3R 20195688 intergenic not near genes chr3R 20195742 intergenic not near genes chr3R 20195797 intergenic not near genes chr3R_10_20195001 chr3R_20195001 RAL-787 1332 chr3R 20201353 20201388 chr3R 20201439 20201474 13 85 2.5 0.5 1.5 5.2 121 chr3R 20201353 intergenic not near genes chr3R 20201414 intergenic not near genes chr3R 20201474 intergenic not near genes chr3R_13_20200001 chr3R_20200001 RAL-787 1333 chr3R 20252221 20252237 chr3R 20252299 20252314 6 78 1.5 0.0 0.8 3.3 93 chr3R 20252221 intergenic not near genes chr3R 20252268 intergenic not near genes chr3R 20252314 intergenic cic + chr3R_6_20250001 chr3R_20250001 RAL-787 1334 chr3R 20266519 20266543 chr3R 20272988 20273014 Burdock 5 6471 0.0 1.0 0.5 3.3 6495 chr3R 20266519 intron cic + chr3R 20269766 intron cic + chr3R 20273014 intron cic + chr3R_5_20265001 chr3R_20265001 RAL-787 1335 chr3R 20282292 20282309 chr3R 20282368 20282385 4 76 0.0 1.0 0.5 2.7 93 chr3R 20282292 intron cic + chr3R 20282338 intron cic + chr3R 20282385 intron cic + chr3R_4_20280001 chr3R_20280001 RAL-787 1336 chr3R 20406493 20406507 chr3R 20406592 20406605 4 97 3.0 0.0 1.5 1.6 112 chr3R 20406493 intron Gfrl - chr3R 20406549 intron Gfrl - chr3R 20406605 intron Gfrl - chr3R_4_20405001 chr3R_20405001 RAL-787 1337 chr3R 20469281 20469472 chr3R 20469380 20469555 8 92 0.0 0.0 0.0 8.0 274 chr3R 20469281 intron Gfrl - chr3R 20469418 intron Gfrl - chr3R 20469555 intron Gfrl - chr3R_8_20465001 chr3R_20465001 RAL-787 1338 chr3R 20506588 20506615 chr3R 20507391 20507412 BS 10 802 4.0 2.5 3.2 2.4 824 chr3R 20506588 intergenic Or92a + chr3R 20507000 intergenic CG4288 - chr3R 20507412 3` UTR CG4288 - chr3R_10_20505001 chr3R_20505001 RAL-787 1339 chr3R 20703481 20703496 chr3R 20703874 20703890 4 394 1.5 0.5 1.0 2.0 409 chr3R 20703481 intron Oamb - chr3R 20703686 intron Oamb - chr3R 20703890 intron Oamb - chr3R_4_20700001 chr3R_20700001 RAL-787 1340 chr3R 20708749 20708759 chr3R 20708834 20708844 4 85 4.0 1.0 2.5 1.1 95 chr3R 20708749 intron Oamb - chr3R 20708796 intron Oamb - chr3R 20708844 intron Oamb - chr3R_4_20705001 chr3R_20705001 RAL-787 1341 chr3R 20733760 20733796 chr3R 20733852 20733888 13 89 3.5 2.0 2.8 3.4 128 chr3R 20733760 intergenic not near genes chr3R 20733824 intergenic not near genes chr3R 20733888 intergenic not near genes chr3R_13_20730001 chr3R_20730001 RAL-787 1342 chr3R 20901657 20901685 chr3R 20901759 20901788 8 102 1.0 2.0 1.5 3.2 131 chr3R 20901657 intergenic CG5621 + chr3R 20901722 intergenic CG5621 + chr3R 20901788 intergenic CG5621 + chr3R_8_20900001 chr3R_20900001 RAL-787 1343 chr3R 20938912 20938938 chr3R 20938997 20939025 7 81 2.0 5.0 3.5 1.6 113 chr3R 20938912 intron CG31191 - chr3R 20938968 intron CG31191 - chr3R 20939025 intron CG31191 - chr3R_7_20935001 chr3R_20935001 RAL-787 1344 chr3R 20942814 20942842 chr3R 20942890 20942892 9 72 0.0 1.0 0.5 6.0 78 chr3R 20942814 intron CG31191 - chr3R 20942853 intron CG31191 - chr3R 20942892 intron CG31191 - chr3R_9_20940001 chr3R_20940001 RAL-787 1345 chr3R 20994952 20994984 chr3R 20995038 20995056 5 76 1.5 4.0 2.8 1.3 104 chr3R 20994952 intron Calx + chr3R 20995004 intron Calx + chr3R 20995056 intron Calx + chr3R_5_20995001 chr3R_20995001 RAL-787 1346 chr3R 21007614 21007639 chr3R 21007691 21007713 9 74 2.5 3.5 3.0 2.2 99 chr3R 21007614 intron Calx + chr3R 21007664 intron Calx + chr3R 21007713 intron Calx + chr3R_9_21005001 chr3R_21005001 RAL-787 1347 chr3R 21014018 21014045 chr3R 21014093 21014123 9 77 1.0 2.5 1.8 3.2 105 chr3R 21014018 3` UTR Calx + chr3R 21014070 3` UTR Calx + chr3R 21014123 3` UTR Calx + chr3R_9_21010001 chr3R_21010001 RAL-787 1348 chr3R 21020404 21020430 chr3R 21020476 21020506 5 75 2.0 2.0 2.0 1.7 102 chr3R 21020404 3` UTR Rlip + chr3R 21020455 3` UTR Rlip + chr3R 21020506 3` UTR Rlip + chr3R_5_21020001 chr3R_21020001 RAL-787 1349 chr3R 21108041 21108064 chr3R 21108302 21108325 6 261 1.5 2.0 1.8 2.1 284 chr3R 21108041 intergenic Sec15 -,rtet + chr3R 21108183 intergenic Sec15 -,rtet + chr3R 21108325 intergenic rtet +,Sec15 - chr3R_6_21105001 chr3R_21105001 RAL-787 1350 chr3R 21141687 21141697 chr3R 21150154 21150168 Tirant 6 8466 4.0 5.5 4.8 1.0 8481 chr3R 21141687 intron SNF4Agamma + chr3R 21145928 intron SNF4Agamma + chr3R 21150168 intron SNF4Agamma + chr3R_6_21145001 chr3R_21145001 RAL-787 1351 chr3R 21154572 21154581 chr3R 21154787 21154796 5 215 3.5 3.0 3.2 1.2 224 chr3R 21154572 intron SNF4Agamma + chr3R 21154684 intron SNF4Agamma + chr3R 21154796 intron SNF4Agamma + chr3R_5_21150001 chr3R_21150001 RAL-787 1352 chr3R 21214714 21214733 chr3R 21214795 21214797 7 78 0.5 0.0 0.2 5.8 83 chr3R 21214714 intergenic CG5862 + chr3R 21214756 intergenic CG5862 + chr3R 21214797 intergenic CG5862 + chr3R_7_21210001 chr3R_21210001 RAL-787 1353 chr3R 21240445 21240476 chr3R 21240537 21240567 7 91 2.5 1.5 2.0 2.3 122 chr3R 21240445 intergenic not near genes chr3R 21240506 intergenic not near genes chr3R 21240567 intergenic not near genes chr3R_7_21240001 chr3R_21240001 RAL-787 1354 chr3R 21321499 21321527 chr3R 21321595 21321622 4 96 1.0 0.0 0.5 2.7 123 chr3R 21321499 intron CG16791 - chr3R 21321560 intron CG16791 - chr3R 21321622 intron CG16791 - chr3R_4_21320001 chr3R_21320001 RAL-787 1355 chr3R 21330867 21330901 chr3R 21330958 21330979 7 86 2.5 2.0 2.2 2.2 112 chr3R 21330867 intron CG16791 - chr3R 21330923 intron CG16791 - chr3R 21330979 intron CG16791 - chr3R_7_21330001 chr3R_21330001 RAL-787 1356 chr3R 21464404 21464428 chr3R 21464490 21464508 4 84 0.0 0.0 0.0 4.0 104 chr3R 21464404 intergenic not near genes chr3R 21464456 intergenic not near genes chr3R 21464508 intergenic not near genes chr3R_4_21460001 chr3R_21460001 RAL-787 1357 chr3R 21472016 21472032 chr3R 21472097 21472113 7 80 3.0 1.0 2.0 2.3 97 chr3R 21472016 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472113 intergenic not near genes chr3R_7_21470001 chr3R_21470001 RAL-787 1358 chr3R 21502928 21502944 chr3R 21503099 21503115 6 171 4.5 2.5 3.5 1.3 187 chr3R 21502928 intron C15 + chr3R 21503022 intron C15 + chr3R 21503115 intron C15 + chr3R_6_21500001 chr3R_21500001 RAL-787 1359 chr3R 21520002 21520141 chr3R 21520103 21520233 6 98 1.5 1.5 1.5 2.4 231 chr3R 21520002 intergenic not near genes chr3R 21520118 intergenic not near genes chr3R 21520233 intergenic not near genes chr3R_6_21520001 chr3R_21520001 RAL-787 1360 chr3R 21582999 21583015 chr3R 21583100 21583116 4 98 2.5 2.5 2.5 1.1 117 chr3R 21582999 intron InR - chr3R 21583058 intron InR - chr3R 21583116 intron InR - chr3R_4_21580001 chr3R_21580001 RAL-787 1361 chr3R 21734868 21734883 chr3R 21734943 21734959 4 76 6.0 1.0 3.5 0.9 91 chr3R 21734868 intergenic not near genes chr3R 21734914 intergenic not near genes chr3R 21734959 intergenic not near genes chr3R_4_21730001 chr3R_21730001 RAL-787 1362 chr3R 21758683 21758707 chr3R 21758764 21758788 10 80 6.0 3.5 4.8 1.7 105 chr3R 21758683 intergenic CG42335 + chr3R 21758736 intergenic CG42335 + chr3R 21758788 exon CG42335 + chr3R_10_21755001 chr3R_21755001 RAL-787 1363 chr3R 21849075 21849103 chr3R 21849283 21849311 7 207 2.5 3.5 3.0 1.8 236 chr3R 21849075 intergenic not near genes chr3R 21849193 intergenic not near genes chr3R 21849311 intergenic not near genes chr3R_7_21845001 chr3R_21845001 RAL-787 1364 chr3R 21907534 21907534 chr3R 28831801 28831804 14 6924268 26.0 18.0 22.0 0.6 6924270 chr3R 21907534 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831804 intron WASp - chr3R_14_25365001 chr3R_25365001 RAL-787 1365 chr3R 8339246 8339247 chr3R 21907535 21907535 5 13568289 11.5 22.5 17.0 0.3 13568289 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907535 intergenic CG6678 + chr3R_5_15120001 chr3R_15120001 RAL-787 1366 chr3R 9620956 9620957 chr3R 21907535 21907535 4 12286578 11.5 22.5 17.0 0.2 12286579 chr3R 9620956 intron CG8312 + chr3R 15764246 intergenic not near genes chr3R 21907535 intergenic CG6678 + chr3R_4_15760001 chr3R_15760001 RAL-787 1367 chr3R 20177844 20177845 chr3R 21907535 21907535 4 1729690 7.0 22.5 14.8 0.3 1729691 chr3R 20177844 intergenic not near genes chr3R 21042690 intergenic Dhc93AB - chr3R 21907535 intergenic CG6678 + chr3R_4_21040001 chr3R_21040001 RAL-787 1368 chr3R 21907535 21907535 chr3R 28831801 28831802 22 6924267 27.0 18.0 22.5 0.9 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_22_25365001 chr3R_25365001 RAL-787 1369 chr3R 21907536 21907536 chr3R 28831801 28831802 27 6924266 26.0 18.0 22.0 1.2 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_27_25365001 chr3R_25365001 RAL-787 1370 chr3R 21983140 21983161 chr3R 21983217 21983239 9 80 2.0 2.0 2.0 3.0 99 chr3R 21983140 intron Eip93F + chr3R 21983190 intron Eip93F + chr3R 21983239 intron Eip93F + chr3R_9_21980001 chr3R_21980001 RAL-787 1371 chr3R 22075200 22075226 chr3R 22075328 22075351 4 127 1.0 1.5 1.2 1.8 151 chr3R 22075200 intron how + chr3R 22075276 intron how + chr3R 22075351 intron how + chr3R_4_22075001 chr3R_22075001 RAL-787 1372 chr3R 22108378 22108391 chr3R 22108589 22108622 5 224 3.0 3.5 3.2 1.2 244 chr3R 22108378 intron CG5778 - chr3R 22108500 intron CG5778 - chr3R 22108622 intron CG5778 - chr3R_5_22105001 chr3R_22105001 RAL-787 1373 chr3R 22117426 22117446 chr3R 22117502 22117522 5 76 2.0 4.5 3.2 1.2 96 chr3R 22117426 intergenic Ir94b -,Ir94c - chr3R 22117474 intergenic Ir94c -,Ir94b - chr3R 22117522 intergenic Ir94c -,Ir94b - chr3R_5_22115001 chr3R_22115001 RAL-787 1374 chr3R 22239494 22239503 chr3R 22248554 22248563 roo 4 9060 4.0 0.0 2.0 1.3 9069 chr3R 22239494 intron SKIP + chr3R 22244028 intron SKIP + chr3R 22248563 intron SKIP + chr3R_4_22240001 chr3R_22240001 RAL-787 1375 chr3R 22428579 22428589 chr3R 22428655 22428665 5 76 4.0 1.0 2.5 1.4 86 chr3R 22428579 intron CG13847 - chr3R 22428622 intron CG13847 - chr3R 22428665 intron CG13847 - chr3R_5_22425001 chr3R_22425001 RAL-787 1376 chr3R 22428601 22428609 chr3R 22428652 22428685 5 67 3.0 0.5 1.8 1.8 84 chr3R 22428601 intron CG13847 - chr3R 22428643 intron CG13847 - chr3R 22428685 intron CG13847 - chr3R_5_22425001 chr3R_22425001 RAL-787 1377 chr3R 22450544 22450577 chr3R 22453184 22453214 NOF 7 2635 4.0 6.0 5.0 1.2 2670 chr3R 22450544 intron CG34376 + chr3R 22451879 intron CG34376 + chr3R 22453214 intron CG34376 + chr3R_7_22450001 chr3R_22450001 RAL-787 1378 chr3R 22507789 22507815 chr3R 22507870 22507897 7 76 2.0 3.5 2.8 1.8 108 chr3R 22507789 intron Octbeta1R + chr3R 22507843 intron Octbeta1R + chr3R 22507897 intron Octbeta1R + chr3R_7_22505001 chr3R_22505001 RAL-787 1379 chr3R 22538443 22538472 chr3R 22538528 22538557 6 84 4.5 1.0 2.8 1.6 114 chr3R 22538443 intron CG5326 - chr3R 22538500 intron CG5326 - chr3R 22538557 intron CG5326 - chr3R_6_22535001 chr3R_22535001 RAL-787 1380 chr3R 22711241 22711248 chr3R 22711314 22711322 5 75 0.0 8.0 4.0 1.0 81 chr3R 22711241 3` UTR wge - chr3R 22711282 3` UTR wge - chr3R 22711322 3` UTR wge - chr3R_5_22710001 chr3R_22710001 RAL-787 1381 chr3R 22769095 22769124 chr3R 22769171 22769199 9 75 2.5 3.0 2.8 2.4 104 chr3R 22769095 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769147 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769199 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_9_22765001 chr3R_22765001 RAL-787 1382 chr3R 22794517 22794538 chr3R 22794594 22794613 6 76 1.0 2.0 1.5 2.4 96 chr3R 22794517 intergenic CG7029 + chr3R 22794565 intergenic not near genes chr3R 22794613 intergenic not near genes chr3R_6_22790001 chr3R_22790001 RAL-787 1383 chr3R 22797759 22797936 chr3R 22797844 22798032 16 88 0.0 0.0 0.0 16.0 273 chr3R 22797759 intergenic not near genes chr3R 22797896 intergenic not near genes chr3R 22798032 intergenic not near genes chr3R_16_22795001 chr3R_22795001 RAL-787 1384 chr3R 22860157 22860172 chr3R 22860249 22860264 7 92 1.5 3.5 2.5 2.0 107 chr3R 22860157 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860264 intergenic not near genes chr3R_7_22860001 chr3R_22860001 RAL-787 1385 chr3R 22877298 22877329 chr3R 22877426 22877457 8 126 1.0 1.5 1.2 3.6 159 chr3R 22877298 intergenic not near genes chr3R 22877378 intergenic not near genes chr3R 22877457 intergenic not near genes chr3R_8_22875001 chr3R_22875001 RAL-787 1386 chr3R 22993510 22993536 chr3R 22993645 22993671 11 134 2.0 4.5 3.2 2.6 161 chr3R 22993510 intron Nha2 - chr3R 22993590 intron Nha2 - chr3R 22993671 intron Nha2 - chr3R_11_22990001 chr3R_22990001 RAL-787 1387 chr3R 23100160 23100439 chr3R 23100244 23100512 14 82 4.5 2.0 3.2 3.3 352 chr3R 23100160 intron,exon CG13830 -,CG6738 + chr3R 23100336 intron,exon CG13830 -,CG6738 + chr3R 23100512 intron,exon CG13830 -,CG6738 + chr3R_14_23100001 chr3R_23100001 RAL-787 1388 chr3R 23335435 23335463 chr3R 23335513 23335541 9 77 2.5 2.5 2.5 2.6 106 chr3R 23335435 intron pnt - chr3R 23335488 intron pnt - chr3R 23335541 intron pnt - chr3R_9_23335001 chr3R_23335001 RAL-787 1389 chr3R 23360201 23360213 chr3R 23360276 23360289 4 76 0.0 6.5 3.2 1.0 88 chr3R 23360201 3` UTR RpS3 + chr3R 23360245 intergenic RpS3 + chr3R 23360289 intergenic RpS3 + chr3R_4_23360001 chr3R_23360001 RAL-787 1390 chr3R 23459427 23459460 chr3R 23459603 23459636 7 174 2.0 1.0 1.5 2.8 209 chr3R 23459427 intron CG4374 - chr3R 23459532 intron CG4374 - chr3R 23459636 intron CG4374 - chr3R_7_23455001 chr3R_23455001 RAL-787 1391 chr3R 23536961 23536981 chr3R 23537143 23537163 7 180 3.0 7.0 5.0 1.2 202 chr3R 23536961 intergenic CG10168 -,CG16732 - chr3R 23537062 exon CG10168 - chr3R 23537163 exon CG10168 - chr3R_7_23535001 chr3R_23535001 RAL-787 1392 chr3R 23548087 23548098 chr3R 23548375 23548403 5 300 2.0 7.5 4.8 0.9 316 chr3R 23548087 intergenic not near genes chr3R 23548245 intergenic not near genes chr3R 23548403 intergenic not near genes chr3R_5_23545001 chr3R_23545001 RAL-787 1393 chr3R 23558402 23558428 chr3R 23560183 23560209 Bari1 5 1781 1.0 2.5 1.8 1.8 1807 chr3R 23558402 intron beat-IV + chr3R 23559306 intron beat-IV + chr3R 23560209 intron beat-IV + chr3R_5_23555001 chr3R_23555001 RAL-787 1394 chr3R 23572753 23572778 chr3R 23572871 23572887 5 117 1.5 1.0 1.2 2.3 134 chr3R 23572753 intron beat-IV + chr3R 23572820 intron beat-IV + chr3R 23572887 intron beat-IV + chr3R_5_23570001 chr3R_23570001 RAL-787 1395 chr3R 23629444 23629473 chr3R 23629518 23629549 18 74 2.0 3.5 2.8 4.7 105 chr3R 23629444 intron CG31145 - chr3R 23629496 intron CG31145 - chr3R 23629549 intron CG31145 - chr3R_18_23625001 chr3R_23625001 RAL-787 1396 chr3R 23684706 23684730 chr3R 23685184 23685188 roo 4 468 1.0 8.0 4.5 0.7 482 chr3R 23684706 intron CG18754 + chr3R 23684947 intron CG18754 + chr3R 23685188 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-787 1397 chr3R 23835406 23835424 chr3R 23844556 23844574 roo 5 9150 5.5 0.0 2.8 1.3 9168 chr3R 23835406 intron CG34355 + chr3R 23839990 intron CG34355 + chr3R 23844574 intron CG34355 + chr3R_5_23835001 chr3R_23835001 RAL-787 1398 chr3R 23888096 23888114 chr3R 23888182 23888200 4 86 0.5 4.0 2.2 1.2 104 chr3R 23888096 intron Pli - chr3R 23888148 intron Pli - chr3R 23888200 intron Pli - chr3R_4_23885001 chr3R_23885001 RAL-787 1399 chr3R 23944912 23944932 chr3R 23944997 23945017 6 84 5.0 3.0 4.0 1.2 105 chr3R 23944912 intron CG12268 - chr3R 23944964 intron CG12268 - chr3R 23945017 exon CG12268 - chr3R_6_23940001 chr3R_23940001 RAL-787 1400 chr3R 24007332 24007365 chr3R 24007459 24007492 4 127 4.0 0.0 2.0 1.3 160 chr3R 24007332 intron KrT95D - chr3R 24007412 intron KrT95D - chr3R 24007492 intron KrT95D - chr3R_4_24005001 chr3R_24005001 RAL-787 1401 chr3R 24021638 24021657 chr3R 24021721 24021747 6 89 1.0 1.5 1.2 2.7 109 chr3R 24021638 intron KrT95D - chr3R 24021692 intron KrT95D - chr3R 24021747 intron KrT95D - chr3R_6_24020001 chr3R_24020001 RAL-787 1402 chr3R 24072087 24072116 chr3R 24072524 24072552 jockey 6 435 4.5 5.0 4.8 1.0 465 chr3R 24072087 intron 4EHP - chr3R 24072320 intron 4EHP - chr3R 24072552 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-787 1403 chr3R 24074571 24074590 chr3R 24074647 24074666 5 76 2.5 2.5 2.5 1.4 95 chr3R 24074571 intron 4EHP - chr3R 24074618 intron 4EHP - chr3R 24074666 intron 4EHP - chr3R_5_24070001 chr3R_24070001 RAL-787 1404 chr3R 24076918 24076943 chr3R 24078385 24078403 hobo 8 1464 3.0 3.0 3.0 2.0 1485 chr3R 24076918 intron 4EHP - chr3R 24077660 intron 4EHP - chr3R 24078403 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-787 1405 chr3R 24100638 24100655 chr3R 24100728 24100744 4 89 2.5 1.0 1.8 1.4 106 chr3R 24100638 intron 4EHP - chr3R 24100691 intron 4EHP - chr3R 24100744 intron 4EHP - chr3R_4_24100001 chr3R_24100001 RAL-787 1406 chr3R 24199740 24199771 chr3R 24199820 24199843 8 77 4.0 1.5 2.8 2.1 103 chr3R 24199740 intron twin - chr3R 24199792 intron twin - chr3R 24199843 intron twin - chr3R_8_24195001 chr3R_24195001 RAL-787 1407 chr3R 24207231 24207246 chr3R 24212307 24212321 flea 5 5075 3.5 7.0 5.2 0.8 5090 chr3R 24207231 intron twin - chr3R 24209776 intron twin - chr3R 24212321 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-787 1408 chr3R 24236481 24236499 chr3R 24236541 24236575 5 73 3.5 1.5 2.5 1.4 94 chr3R 24236481 exon mask + chr3R 24236528 intron mask + chr3R 24236575 intron mask + chr3R_5_24235001 chr3R_24235001 RAL-787 1409 chr3R 24434243 24434274 chr3R 24434320 24434351 9 78 1.5 1.0 1.2 4.1 108 chr3R 24434243 intron nAChRalpha1 - chr3R 24434297 intron nAChRalpha1 - chr3R 24434351 intron nAChRalpha1 - chr3R_9_24430001 chr3R_24430001 RAL-787 1410 chr3R 24493061 24493081 chr3R 24493147 24493167 4 84 3.0 2.5 2.8 1.1 106 chr3R 24493061 intergenic not near genes chr3R 24493114 intergenic not near genes chr3R 24493167 intergenic not near genes chr3R_4_24490001 chr3R_24490001 RAL-787 1411 chr3R 24670168 24670194 chr3R 24670252 24670278 5 83 3.0 3.5 3.2 1.2 110 chr3R 24670168 intron slo + chr3R 24670223 intron slo + chr3R 24670278 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-787 1412 chr3R 24730090 24730121 chr3R 24732468 24732482 Doc 9 2369 2.5 0.0 1.2 4.1 2392 chr3R 24730090 intron tok + chr3R 24731286 intron tok + chr3R 24732482 intron tok + chr3R_9_24730001 chr3R_24730001 RAL-787 1413 chr3R 24789982 24790007 chr3R 24790127 24790151 7 145 0.5 4.0 2.2 2.2 169 chr3R 24789982 intron,5` UTR Ets96B +,CG13634 - chr3R 24790066 intron,5` UTR Ets96B +,CG13634 - chr3R 24790151 intron Ets96B + chr3R_7_24790001 chr3R_24790001 RAL-787 1414 chr3R 24858941 24858972 chr3R 24859021 24859052 11 80 1.5 3.5 2.5 3.1 111 chr3R 24858941 intron ppk22 - chr3R 24858996 exon ppk22 - chr3R 24859052 exon ppk22 - chr3R_11_24855001 chr3R_24855001 RAL-787 1415 chr3R 24927125 24927156 chr3R 24931916 24931935 Doc 5 4788 2.0 3.0 2.5 1.4 4810 chr3R 24927125 intergenic Trf4-2 + chr3R 24929530 intergenic not near genes chr3R 24931935 intergenic CG11771 + chr3R_5_24925001 chr3R_24925001 RAL-787 1416 chr3R 25025887 25025917 chr3R 25029267 25029275 4 3368 15.0 13.5 14.2 0.3 3388 chr3R 25025887 exon Hr96 + chr3R 25027581 intron Hr96 + chr3R 25029275 3` UTR Hr96 + chr3R_4_25025001 chr3R_25025001 RAL-787 1417 chr3R 25145439 25145461 chr3R 25145569 25145592 6 130 2.5 2.0 2.2 1.9 153 chr3R 25145439 intergenic not near genes chr3R 25145516 intergenic not near genes chr3R 25145592 intergenic not near genes chr3R_6_25145001 chr3R_25145001 RAL-787 1418 chr3R 25368485 25368501 chr3R 25368602 25368619 4 118 2.0 0.0 1.0 2.0 134 chr3R 25368485 intron Fur1 - chr3R 25368552 intron Fur1 - chr3R 25368619 intron Fur1 - chr3R_4_25365001 chr3R_25365001 RAL-787 1419 chr3R 25436496 25436514 chr3R 25436589 25436608 6 94 3.5 3.0 3.2 1.4 112 chr3R 25436496 intron Fur1 - chr3R 25436552 intron Fur1 - chr3R 25436608 intron Fur1 - chr3R_6_25435001 chr3R_25435001 RAL-787 1420 chr3R 25439404 25439439 chr3R 25439487 25439518 9 83 1.5 3.0 2.2 2.8 114 chr3R 25439404 intron Fur1 - chr3R 25439461 intron Fur1 - chr3R 25439518 intron Fur1 - chr3R_9_25435001 chr3R_25435001 RAL-787 1421 chr3R 25466719 25466734 chr3R 25467023 25467038 6 304 5.0 2.0 3.5 1.3 319 chr3R 25466719 intron Fur1 - chr3R 25466878 intron Fur1 - chr3R 25467038 intron Fur1 - chr3R_6_25465001 chr3R_25465001 RAL-787 1422 chr3R 25612918 25612943 chr3R 25612990 25613020 13 75 3.0 3.5 3.2 3.1 102 chr3R 25612918 intron Npl4 - chr3R 25612969 intron Npl4 - chr3R 25613020 intron Npl4 - chr3R_13_25610001 chr3R_25610001 RAL-787 1423 chr3R 25689127 25689163 chr3R 25689235 25689252 13 106 4.5 4.0 4.2 2.5 125 chr3R 25689127 intergenic not near genes chr3R 25689190 intergenic not near genes chr3R 25689252 intergenic not near genes chr3R_13_25685001 chr3R_25685001 RAL-787 1424 chr3R 25762938 25762968 chr3R 25763027 25763056 11 88 3.0 0.5 1.8 3.9 118 chr3R 25762938 5` UTR LpR1 - chr3R 25762997 5` UTR LpR1 - chr3R 25763056 5` UTR LpR1 - chr3R_11_25760001 chr3R_25760001 RAL-787 1425 chr3R 25801265 25801290 chr3R 25802249 25802265 6 980 2.0 1.5 1.8 2.1 1000 chr3R 25801265 intergenic not near genes chr3R 25801765 intergenic not near genes chr3R 25802265 intergenic not near genes chr3R_6_25800001 chr3R_25800001 RAL-787 1426 chr3R 25832700 25832724 chr3R 25841879 25841905 roo 9 9181 2.0 4.5 3.2 2.1 9205 chr3R 25832700 exon alpha4GT2 + chr3R 25837302 intron alpha4GT2 + chr3R 25841905 exon alpha4GT2 + chr3R_9_25835001 chr3R_25835001 RAL-787 1427 chr3R 25843635 25843668 chr3R 25843765 25843798 4 130 0.0 3.0 1.5 1.6 163 chr3R 25843635 intergenic CR45653 + chr3R 25843716 intergenic CR45653 + chr3R 25843798 intergenic CR45653 + chr3R_4_25840001 chr3R_25840001 RAL-787 1428 chr3R 25846142 25846166 chr3R 25846239 25846261 8 96 1.5 2.5 2.0 2.7 119 chr3R 25846142 5` UTR CR45654 + chr3R 25846202 5` UTR CR45654 + chr3R 25846261 5` UTR CR45654 + chr3R_8_25845001 chr3R_25845001 RAL-787 1429 chr3R 26166173 26166207 chr3R 26166259 26166293 14 85 2.5 3.0 2.8 3.7 120 chr3R 26166173 intergenic not near genes chr3R 26166233 intergenic not near genes chr3R 26166293 intergenic not near genes chr3R_14_26165001 chr3R_26165001 RAL-787 1430 chr3R 26265816 26265847 chr3R 26265904 26265931 8 87 2.0 1.5 1.8 2.9 115 chr3R 26265816 intron CG6154 + chr3R 26265874 intron CG6154 + chr3R 26265931 intron CG6154 + chr3R_8_26265001 chr3R_26265001 RAL-787 1431 chr3R 26292102 26292141 chr3R 26292182 26292221 6 80 2.5 1.5 2.0 2.0 119 chr3R 26292102 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292221 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-787 1432 chr3R 26294722 26294750 chr3R 26294799 26294828 6 78 3.0 2.5 2.8 1.6 106 chr3R 26294722 intergenic not near genes chr3R 26294775 intergenic not near genes chr3R 26294828 intergenic not near genes chr3R_6_26290001 chr3R_26290001 RAL-787 1433 chr3R 26376324 26376358 chr3R 26385484 26385507 roo 9 9157 2.5 0.5 1.5 3.6 9183 chr3R 26376324 intergenic not near genes chr3R 26380916 intergenic not near genes chr3R 26385507 intergenic not near genes chr3R_9_26380001 chr3R_26380001 RAL-787 1434 chr3R 26510522 26510534 chr3R 26519577 26519589 roo 5 9054 1.5 2.0 1.8 1.8 9067 chr3R 26510522 intron plum - chr3R 26515056 intron plum - chr3R 26519589 intron,5` UTR plum -,CR45226 + chr3R_5_26515001 chr3R_26515001 RAL-787 1435 chr3R 26542044 26542074 chr3R 26542135 26542164 5 90 4.0 2.0 3.0 1.2 120 chr3R 26542044 intron scrib + chr3R 26542104 intron scrib + chr3R 26542164 intron scrib + chr3R_5_26540001 chr3R_26540001 RAL-787 1436 chr3R 26558328 26558353 chr3R 26565640 26565663 Stalker4 5 7306 3.5 2.5 3.0 1.2 7335 chr3R 26558328 intron scrib + chr3R 26561996 intron scrib + chr3R 26565663 intron scrib + chr3R_5_26560001 chr3R_26560001 RAL-787 1437 chr3R 26607738 26607770 chr3R 26607814 26607841 8 72 2.5 1.5 2.0 2.7 103 chr3R 26607738 5` UTR CR44951 + chr3R 26607790 5` UTR CR44951 + chr3R 26607841 5` UTR CR44951 + chr3R_8_26605001 chr3R_26605001 RAL-787 1438 chr3R 26642731 26642760 chr3R 26643124 26643153 jockey 14 390 3.5 2.5 3.0 3.5 422 chr3R 26642731 intergenic not near genes chr3R 26642942 intergenic not near genes chr3R 26643153 intergenic not near genes chr3R_14_26640001 chr3R_26640001 RAL-787 1439 chr3R 26755705 26755728 chr3R 26755780 26755785 10 73 1.0 3.5 2.2 3.1 80 chr3R 26755705 intergenic not near genes chr3R 26755745 intergenic not near genes chr3R 26755785 intergenic not near genes chr3R_10_26755001 chr3R_26755001 RAL-787 1440 chr3R 26770247 26770274 chr3R 26770317 26770351 10 76 2.0 3.0 2.5 2.9 104 chr3R 26770247 intergenic CR45563 + chr3R 26770299 intergenic CR45563 + chr3R 26770351 intergenic not near genes chr3R_10_26770001 chr3R_26770001 RAL-787 1441 chr3R 26810552 26810577 chr3R 26811037 26811062 roo 8 485 2.5 9.0 5.8 1.2 510 chr3R 26810552 intron Tl + chr3R 26810807 intron Tl + chr3R 26811062 intron Tl + chr3R_8_26810001 chr3R_26810001 RAL-787 1442 chr3R 26845573 26845607 chr3R 26845652 26845687 15 80 4.0 2.5 3.2 3.6 114 chr3R 26845573 intron Lerp - chr3R 26845630 intron Lerp - chr3R 26845687 intron Lerp - chr3R_15_26845001 chr3R_26845001 RAL-787 1443 chr3R 26870423 26870453 chr3R 26870778 26870807 10 352 2.0 17.0 9.5 1.0 384 chr3R 26870423 intron BM-40-SPARC - chr3R 26870615 intron BM-40-SPARC - chr3R 26870807 intron BM-40-SPARC - chr3R_10_26870001 chr3R_26870001 RAL-787 1444 chr3R 26870529 26870561 chr3R 26870864 26870886 5 329 13.5 24.0 18.8 0.3 357 chr3R 26870529 intron BM-40-SPARC - chr3R 26870708 intron BM-40-SPARC - chr3R 26870886 intron BM-40-SPARC - chr3R_5_26870001 chr3R_26870001 RAL-787 1445 chr3R 26920377 26920409 chr3R 26920523 26920555 7 146 2.0 1.0 1.5 2.8 178 chr3R 26920377 intron sda + chr3R 26920466 intron sda + chr3R 26920555 intron sda + chr3R_7_26920001 chr3R_26920001 RAL-787 1446 chr3R 26960739 26960761 chr3R 26960828 26960848 4 86 3.0 0.5 1.8 1.4 109 chr3R 26960739 intergenic Tsp97E - chr3R 26960794 intergenic Tsp97E - chr3R 26960848 intergenic Tsp97E - chr3R_4_26960001 chr3R_26960001 RAL-787 1447 chr3R 27007406 27007426 chr3R 27016541 27016554 roo 6 9134 1.5 3.5 2.5 1.7 9148 chr3R 27007406 intron RYa-R + chr3R 27011980 intron RYa-R + chr3R 27016554 intron RYa-R + chr3R_6_27010001 chr3R_27010001 RAL-787 1448 chr3R 27028724 27028753 chr3R 27028802 27028828 5 78 2.0 0.5 1.2 2.3 104 chr3R 27028724 intron RYa-R + chr3R 27028776 intron RYa-R + chr3R 27028828 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-787 1449 chr3R 27140520 27140548 chr3R 27148130 27148158 412 8 7608 1.5 5.0 3.2 1.9 7638 chr3R 27140520 intron CG6051 - chr3R 27144339 intron CG6051 - chr3R 27148158 intron CG6051 - chr3R_8_27140001 chr3R_27140001 RAL-787 1450 chr3R 27200155 27200192 chr3R 27200241 27200271 16 83 3.5 3.5 3.5 3.6 116 chr3R 27200155 intergenic not near genes chr3R 27200213 intergenic not near genes chr3R 27200271 intergenic not near genes chr3R_16_27200001 chr3R_27200001 RAL-787 1451 chr3R 27315993 27316010 chr3R 27316069 27316086 9 76 2.5 0.5 1.5 3.6 93 chr3R 27315993 intron CG3339 - chr3R 27316040 intron CG3339 - chr3R 27316086 exon CG3339 - chr3R_9_27315001 chr3R_27315001 RAL-787 1452 chr3R 27329474 27329495 chr3R 27329551 27329572 6 77 1.5 2.0 1.8 2.1 98 chr3R 27329474 intergenic CG3330 - chr3R 27329523 intergenic CG3330 - chr3R 27329572 intergenic CG3330 - chr3R_6_27325001 chr3R_27325001 RAL-787 1453 chr3R 27342792 27342820 chr3R 27351372 27351401 Tirant 8 8581 4.0 3.0 3.5 1.8 8609 chr3R 27342792 intron CG42534 + chr3R 27347096 intron CG42534 + chr3R 27351401 intron CG42534 + chr3R_8_27345001 chr3R_27345001 RAL-787 1454 chr3R 27354821 27354846 chr3R 27355211 27355236 12 390 3.5 3.5 3.5 2.7 415 chr3R 27354821 intron CG42534 + chr3R 27355028 intron CG42534 + chr3R 27355236 intron CG42534 + chr3R_12_27355001 chr3R_27355001 RAL-787 1455 chr3R 27619705 27619727 chr3R 27619818 27619842 11 111 2.5 3.0 2.8 2.9 137 chr3R 27619705 intron Tusp + chr3R 27619774 intron Tusp + chr3R 27619842 intron Tusp + chr3R_11_27615001 chr3R_27615001 RAL-787 1456 chr3R 27619728 27619731 chr3R 27619815 27619837 6 106 2.0 3.0 2.5 1.7 109 chr3R 27619728 intron Tusp + chr3R 27619782 intron Tusp + chr3R 27619837 intron Tusp + chr3R_6_27615001 chr3R_27615001 RAL-787 1457 chr3R 27644251 27644280 chr3R 27644343 27644372 7 92 3.0 1.5 2.2 2.2 121 chr3R 27644251 intron tau - chr3R 27644312 intron tau - chr3R 27644372 intron tau - chr3R_7_27640001 chr3R_27640001 RAL-787 1458 chr3R 27679939 27679971 chr3R 27680061 27680094 6 122 2.5 1.5 2.0 2.0 155 chr3R 27679939 exon CG12883 + chr3R 27680016 3` UTR CG12883 + chr3R 27680094 3` UTR CG12883 + chr3R_6_27680001 chr3R_27680001 RAL-787 1459 chr3R 27705356 27705388 chr3R 27705436 27705468 8 77 1.5 2.5 2.0 2.7 112 chr3R 27705356 exon CG12428 - chr3R 27705412 intron CG12428 - chr3R 27705468 exon CG12428 - chr3R_8_27705001 chr3R_27705001 RAL-787 1460 chr3R 27725563 27725595 chr3R 27731005 27731037 I-element 8 5441 2.5 3.5 3.0 2.0 5474 chr3R 27725563 intergenic not near genes chr3R 27728300 intergenic not near genes chr3R 27731037 intergenic not near genes chr3R_8_27725001 chr3R_27725001 RAL-787 1461 chr3R 27731195 27731226 chr3R 27731276 27731307 5 75 1.5 6.5 4.0 1.0 112 chr3R 27731195 intergenic not near genes chr3R 27731251 intergenic not near genes chr3R 27731307 intergenic not near genes chr3R_5_27730001 chr3R_27730001 RAL-787 1462 chr3R 27747989 27748010 chr3R 27748067 27748087 5 78 1.0 1.0 1.0 2.5 98 chr3R 27747989 3` UTR Ets98B + chr3R 27748038 3` UTR Ets98B + chr3R 27748087 3` UTR Ets98B + chr3R_5_27745001 chr3R_27745001 RAL-787 1463 chr3R 27779275 27779289 chr3R 27779352 27779366 4 77 3.0 6.0 4.5 0.7 91 chr3R 27779275 exon CG34353 - chr3R 27779320 intron CG34353 - chr3R 27779366 intron CG34353 - chr3R_4_27775001 chr3R_27775001 RAL-787 1464 chr3R 27799939 27799963 chr3R 27800021 27800045 9 82 1.5 2.5 2.0 3.0 106 chr3R 27799939 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800045 intron CG34353 - chr3R_9_27795001 chr3R_27795001 RAL-787 1465 chr3R 27829900 27829910 chr3R 27829979 27829989 5 79 4.5 0.0 2.2 1.6 89 chr3R 27829900 intron CG34353 - chr3R 27829944 intron CG34353 - chr3R 27829989 intron CG34353 - chr3R_5_27825001 chr3R_27825001 RAL-787 1466 chr3R 27856758 27856787 chr3R 27858240 27858270 hopper2 11 1482 3.5 1.0 2.2 3.4 1512 chr3R 27856758 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858270 intron CG34353 - chr3R_11_27855001 chr3R_27855001 RAL-787 1467 chr3R 27862952 27862986 chr3R 27868257 27868291 Transpac 7 5303 2.5 2.5 2.5 2.0 5339 chr3R 27862952 intron CG34353 - chr3R 27865622 intron CG34353 - chr3R 27868291 intron CG34353 - chr3R_7_27865001 chr3R_27865001 RAL-787 1468 chr3R 27875710 27875732 chr3R 27882765 27882787 297 10 7055 1.5 6.0 3.8 2.1 7077 chr3R 27875710 intron CG34353 - chr3R 27879248 intron CG34353 - chr3R 27882787 intron CG34353 - chr3R_10_27875001 chr3R_27875001 RAL-787 1469 chr3R 27911250 27911253 chr3R 27911327 27911331 5 78 5.0 1.5 3.2 1.2 81 chr3R 27911250 intergenic not near genes chr3R 27911290 intergenic not near genes chr3R 27911331 intergenic not near genes chr3R_5_27910001 chr3R_27910001 RAL-787 1470 chr3R 28039989 28040008 chr3R 28040071 28040088 4 81 1.5 8.5 5.0 0.7 99 chr3R 28039989 intron CG34362 + chr3R 28040038 intron CG34362 + chr3R 28040088 intron CG34362 + chr3R_4_28040001 chr3R_28040001 RAL-787 1471 chr3R 28054455 28054475 chr3R 28054520 28054551 12 74 3.0 1.0 2.0 4.0 96 chr3R 28054455 intron CG34362 + chr3R 28054503 intron CG34362 + chr3R 28054551 intron CG34362 + chr3R_12_28050001 chr3R_28050001 RAL-787 1472 chr3R 28068492 28068520 chr3R 28073934 28073953 I-element 7 5440 1.5 1.0 1.2 3.2 5461 chr3R 28068492 intron CG34362 + chr3R 28071222 intron CG34362 + chr3R 28073953 intron CG34362 + chr3R_7_28070001 chr3R_28070001 RAL-787 1473 chr3R 28132497 28132512 chr3R 28132577 28132581 7 79 1.0 0.5 0.8 3.9 84 chr3R 28132497 intergenic not near genes chr3R 28132539 intergenic not near genes chr3R 28132581 intergenic not near genes chr3R_7_28130001 chr3R_28130001 RAL-787 1474 chr3R 28173675 28173704 chr3R 28181105 28181134 mdg1 6 7430 2.5 1.5 2.0 2.0 7459 chr3R 28173675 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181134 intron CG34354 + chr3R_6_28175001 chr3R_28175001 RAL-787 1475 chr3R 28253348 28253365 chr3R 28255853 28255873 jockey 6 2508 1.5 6.5 4.0 1.2 2525 chr3R 28253348 intergenic not near genes chr3R 28254610 intergenic not near genes chr3R 28255873 intergenic not near genes chr3R_6_28250001 chr3R_28250001 RAL-787 1476 chr3R 28255972 28255986 chr3R 28256379 28256380 4 406 3.5 4.0 3.8 0.8 408 chr3R 28255972 intergenic not near genes chr3R 28256176 intergenic not near genes chr3R 28256380 intergenic not near genes chr3R_4_28255001 chr3R_28255001 RAL-787 1477 chr3R 28393699 28393732 chr3R 28393797 28393832 7 100 2.5 1.0 1.8 2.5 133 chr3R 28393699 intergenic not near genes chr3R 28393766 intergenic not near genes chr3R 28393832 intergenic not near genes chr3R_7_28390001 chr3R_28390001 RAL-787 1478 chr3R 28407705 28407742 chr3R 28407790 28407820 11 84 2.5 5.5 4.0 2.2 115 chr3R 28407705 intergenic not near genes chr3R 28407762 intergenic not near genes chr3R 28407820 intergenic not near genes chr3R_11_28405001 chr3R_28405001 RAL-787 1479 chr3R 28424174 28424192 chr3R 28424263 28424281 7 88 4.5 1.5 3.0 1.8 107 chr3R 28424174 intron beat-VI + chr3R 28424228 intron beat-VI + chr3R 28424281 intron beat-VI + chr3R_7_28420001 chr3R_28420001 RAL-787 1480 chr3R 28441982 28442016 chr3R 28442077 28442102 13 93 13.5 10.5 12.0 1.0 120 chr3R 28441982 intron beat-VI + chr3R 28442042 intron beat-VI + chr3R 28442102 intron beat-VI + chr3R_13_28440001 chr3R_28440001 RAL-787 1481 chr3R 28484353 28484375 chr3R 28486270 28486292 53 1918 40.5 66.0 53.2 1.0 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_53_28485001 chr3R_28485001 RAL-787 1482 chr3R 28616480 28616496 chr3R 28616574 28616590 8 94 3.0 2.5 2.8 2.1 110 chr3R 28616480 intron CG10011 - chr3R 28616535 intron CG10011 - chr3R 28616590 intron CG10011 - chr3R_8_28615001 chr3R_28615001 RAL-787 1483 chr3R 28792877 28792901 chr3R 28797963 28797996 jockey 11 5090 3.0 3.0 3.0 2.8 5119 chr3R 28792877 intergenic not near genes chr3R 28795436 intergenic not near genes chr3R 28797996 intergenic not near genes chr3R_11_28795001 chr3R_28795001 RAL-787 1484 chr3R 28811568 28811588 chr3R 28811714 28811734 4 146 3.5 1.0 2.2 1.2 166 chr3R 28811568 intergenic wdn - chr3R 28811651 intergenic wdn -,CG1646 + chr3R 28811734 intergenic CG1646 +,wdn - chr3R_4_28810001 chr3R_28810001 RAL-787 1485 chr3R 28830904 28830915 chr3R 28830981 28830991 5 77 1.5 6.0 3.8 1.0 87 chr3R 28830904 intron WASp - chr3R 28830948 intron WASp - chr3R 28830991 intron WASp - chr3R_5_28830001 chr3R_28830001 RAL-787 1486 chr3R 21907534 21907536 chr3R 28831801 28831802 68 6924266 26.0 18.0 22.0 3.0 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_68_25365001 chr3R_25365001 RAL-787 1487 chr3R 28960511 28960544 chr3R 28960596 28960629 9 85 1.0 2.0 1.5 3.6 118 chr3R 28960511 intron CG14521 - chr3R 28960570 intron CG14521 - chr3R 28960629 intron CG14521 - chr3R_9_28960001 chr3R_28960001 RAL-787 1488 chr3R 28989004 28989017 chr3R 28989083 28989094 6 79 0.0 1.5 0.8 3.3 90 chr3R 28989004 intergenic not near genes chr3R 28989049 intergenic not near genes chr3R 28989094 intergenic not near genes chr3R_6_28985001 chr3R_28985001 RAL-787 1489 chr3R 28992767 28992793 chr3R 28992845 28992871 9 78 2.0 3.0 2.5 2.6 104 chr3R 28992767 intergenic wat - chr3R 28992819 intergenic wat - chr3R 28992871 intergenic wat - chr3R_9_28990001 chr3R_28990001 RAL-787 1490 chr3R 29059373 29059393 chr3R 29059468 29059484 7 93 4.5 2.5 3.5 1.6 111 chr3R 29059373 3` UTR Cul5 - chr3R 29059428 3` UTR Cul5 - chr3R 29059484 3` UTR Cul5 - chr3R_7_29055001 chr3R_29055001 RAL-787 1491 chr3R 29213059 29213091 chr3R 29213142 29213172 14 81 1.5 3.0 2.2 4.4 113 chr3R 29213059 intergenic not near genes chr3R 29213116 intergenic not near genes chr3R 29213172 intergenic not near genes chr3R_14_29210001 chr3R_29210001 RAL-787 1492 chr3R 29237251 29237278 chr3R 29239267 29239276 10 2017 20.5 3.5 12.0 0.8 2025 chr3R 29237251 exon CG11951 - chr3R 29238264 intron CG11951 - chr3R 29239276 exon CG31427 - chr3R_10_29235001 chr3R_29235001 RAL-787 1493 chr3R 29239230 29239247 chr3R 29245521 29245534 4 6289 3.5 9.0 6.2 0.6 6304 chr3R 29239230 exon CG31427 - chr3R 29242382 exon CG31445 - chr3R 29245534 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-787 1494 chr3R 29240319 29240505 chr3R 29240400 29240589 4 83 0.0 0.5 0.2 3.3 270 chr3R 29240319 5` UTR CG31427 - chr3R 29240454 intergenic CG31427 -,CG31445 - chr3R 29240589 3` UTR CG31445 - chr3R_4_29240001 chr3R_29240001 RAL-787 1495 chr3R 29249621 29249650 chr3R 29249708 29249737 6 86 0.0 3.0 1.5 2.4 116 chr3R 29249621 intron SP1029 - chr3R 29249679 intron SP1029 - chr3R 29249737 intron SP1029 - chr3R_6_29245001 chr3R_29245001 RAL-787 1496 chr3R 29256268 29256299 chr3R 29256348 29256379 10 79 2.0 3.0 2.5 2.9 111 chr3R 29256268 intergenic CG45544 +,stg - chr3R 29256324 intergenic CG45544 + chr3R 29256379 intergenic CG45544 + chr3R_10_29255001 chr3R_29255001 RAL-787 1497 chr3R 29264191 29264197 chr3R 29264293 29264298 6 102 1.5 2.5 2.0 2.0 107 chr3R 29264191 intergenic not near genes chr3R 29264244 intergenic not near genes chr3R 29264298 intergenic not near genes chr3R_6_29260001 chr3R_29260001 RAL-787 1498 chr3R 29292051 29292077 chr3R 29292129 29292157 7 80 1.0 5.5 3.2 1.7 106 chr3R 29292051 intergenic not near genes chr3R 29292104 intergenic not near genes chr3R 29292157 intergenic not near genes chr3R_7_29290001 chr3R_29290001 RAL-787 1499 chr3R 29319828 29319854 chr3R 29320147 29320173 jockey 5 319 0.5 4.5 2.5 1.4 345 chr3R 29319828 intergenic Cnx99A - chr3R 29320000 intergenic Cnx99A - chr3R 29320173 intergenic not near genes chr3R_5_29320001 chr3R_29320001 RAL-787 1500 chr3R 29322642 29322664 chr3R 29322723 29322732 4 78 1.0 3.0 2.0 1.3 90 chr3R 29322642 intergenic not near genes chr3R 29322687 intergenic not near genes chr3R 29322732 intergenic not near genes chr3R_4_29320001 chr3R_29320001 RAL-787 1501 chr3R 29365392 29365409 chr3R 29365474 29365491 6 82 2.5 2.5 2.5 1.7 99 chr3R 29365392 intergenic not near genes chr3R 29365442 intergenic not near genes chr3R 29365491 intergenic not near genes chr3R_6_29365001 chr3R_29365001 RAL-787 1502 chr3R 29406617 29406642 chr3R 29407898 29407910 jockey 14 1281 3.5 3.5 3.5 3.1 1293 chr3R 29406617 intron Ptp99A + chr3R 29407264 intron Ptp99A + chr3R 29407910 intron Ptp99A + chr3R_14_29405001 chr3R_29405001 RAL-787 1503 chr3R 29449364 29449388 chr3R 29449442 29449466 4 78 3.0 4.0 3.5 0.9 102 chr3R 29449364 intron Ptp99A + chr3R 29449415 intron Ptp99A + chr3R 29449466 intron Ptp99A + chr3R_4_29445001 chr3R_29445001 RAL-787 1504 chr3R 29581538 29581558 chr3R 29581614 29581639 5 80 4.5 0.0 2.2 1.6 101 chr3R 29581538 intergenic not near genes chr3R 29581588 intergenic not near genes chr3R 29581639 intergenic not near genes chr3R_5_29580001 chr3R_29580001 RAL-787 1505 chr3R 29624956 29624990 chr3R 29625032 29625065 12 76 4.0 2.5 3.2 2.9 109 chr3R 29624956 intergenic not near genes chr3R 29625010 intergenic not near genes chr3R 29625065 intergenic not near genes chr3R_12_29625001 chr3R_29625001 RAL-787 1506 chr3R 29642515 29642534 chr3R 29642592 29642611 4 76 3.5 3.0 3.2 1.0 96 chr3R 29642515 intron Dop1R2 - chr3R 29642563 intron Dop1R2 - chr3R 29642611 intron Dop1R2 - chr3R_4_29640001 chr3R_29640001 RAL-787 1507 chr3R 29738276 29738299 chr3R 29739743 29739763 hobo 6 1463 1.5 3.5 2.5 1.7 1487 chr3R 29738276 5` UTR CG1969 + chr3R 29739020 intron CG1969 + chr3R 29739763 5` UTR CG1969 + chr3R_6_29735001 chr3R_29735001 RAL-787 1508 chr3R 29758956 29758971 chr3R 29759017 29759047 7 74 3.0 3.0 3.0 1.8 91 chr3R 29758956 3` UTR CR44953 - chr3R 29759002 3` UTR CR44953 - chr3R 29759047 intergenic CR44953 - chr3R_7_29755001 chr3R_29755001 RAL-787 1509 chr3R 29760364 29760389 chr3R 29761565 29761590 pogo 6 1201 3.5 2.0 2.8 1.6 1226 chr3R 29760364 intergenic not near genes chr3R 29760977 intergenic not near genes chr3R 29761590 intergenic not near genes chr3R_6_29760001 chr3R_29760001 RAL-787 1510 chr3R 29782273 29782296 chr3R 29782349 29782372 8 76 0.5 5.5 3.0 2.0 99 chr3R 29782273 intron kay + chr3R 29782322 intron kay + chr3R 29782372 intron kay + chr3R_8_29780001 chr3R_29780001 RAL-787 1511 chr3R 29882018 29882052 chr3R 29891174 29891209 roo 8 9156 4.5 4.5 4.5 1.5 9191 chr3R 29882018 intron CG31038 + chr3R 29886614 intron CG31038 + chr3R 29891209 intron CG31038 + chr3R_8_29885001 chr3R_29885001 RAL-787 1512 chr3R 30013676 30013691 chr3R 30013759 30013774 4 83 4.0 2.0 3.0 1.0 98 chr3R 30013676 intron CG7920 - chr3R 30013725 intron CG7920 - chr3R 30013774 intron CG7920 - chr3R_4_30010001 chr3R_30010001 RAL-787 1513 chr3R 30032162 30032179 chr3R 30032241 30032258 6 78 2.5 1.5 2.0 2.0 96 chr3R 30032162 intron Axn + chr3R 30032210 intron Axn + chr3R 30032258 intron Axn + chr3R_6_30030001 chr3R_30030001 RAL-787 1514 chr3R 30038568 30038600 chr3R 30038648 30038680 8 80 1.5 3.0 2.2 2.5 112 chr3R 30038568 intron janB - chr3R 30038624 exon,3` UTR janB -,janA - chr3R 30038680 5` UTR,3` UTR janB -,janA - chr3R_8_30035001 chr3R_30035001 RAL-787 1515 chr3R 30084851 30084879 chr3R 30086318 30086346 hobo 8 1467 5.0 3.5 4.2 1.5 1495 chr3R 30084851 intron sima + chr3R 30085598 intron sima + chr3R 30086346 intron sima + chr3R_8_30085001 chr3R_30085001 RAL-787 1516 chr3R 30156867 30156897 chr3R 30156946 30156975 7 76 2.5 3.5 3.0 1.8 108 chr3R 30156867 intron CG11498 - chr3R 30156921 intron CG11498 - chr3R 30156975 intron CG11498 - chr3R_7_30155001 chr3R_30155001 RAL-787 1517 chr3R 30224656 30224663 chr3R 30224733 30224740 4 78 1.5 3.5 2.5 1.1 84 chr3R 30224656 intergenic not near genes chr3R 30224698 intergenic not near genes chr3R 30224740 intergenic not near genes chr3R_4_30220001 chr3R_30220001 RAL-787 1518 chr3R 30238760 30238797 chr3R 30239924 30239961 1360 6 1162 1.0 0.0 0.5 4.0 1201 chr3R 30238760 intergenic not near genes chr3R 30239360 intergenic not near genes chr3R 30239961 intergenic not near genes chr3R_6_30235001 chr3R_30235001 RAL-787 1519 chr3R 30262580 30262593 chr3R 30262673 30262685 5 93 0.0 1.5 0.8 2.8 105 chr3R 30262580 intergenic not near genes chr3R 30262632 intergenic not near genes chr3R 30262685 intergenic not near genes chr3R_5_30260001 chr3R_30260001 RAL-787 1520 chr3R 30458018 30458046 chr3R 30458098 30458126 4 80 4.0 4.5 4.2 0.8 108 chr3R 30458018 intron CG2224 - chr3R 30458072 intron CG2224 - chr3R 30458126 intron CG2224 - chr3R_4_30455001 chr3R_30455001 RAL-787 1521 chr3R 30466703 30466725 chr3R 30466781 30466805 6 79 4.5 4.5 4.5 1.1 102 chr3R 30466703 intron PH4alphaEFB + chr3R 30466754 intron PH4alphaEFB + chr3R 30466805 intron PH4alphaEFB + chr3R_6_30465001 chr3R_30465001 RAL-787 1522 chr3R 30480486 30480511 chr3R 30482940 30482979 jockey 8 2466 3.5 3.0 3.2 1.9 2493 chr3R 30480486 intron PH4alphaEFB + chr3R 30481732 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_8_30480001 chr3R_30480001 RAL-787 1523 chr3R 30627621 30627633 chr3R 30627692 30627713 4 75 4.5 7.0 5.8 0.6 92 chr3R 30627621 exon CG2267 - chr3R 30627667 exon CG2267 - chr3R 30627713 exon CG2267 - chr3R_4_30625001 chr3R_30625001 RAL-787 1524 chr3R 30679518 30679551 chr3R 30686987 30687020 blood 8 7468 1.0 2.5 1.8 2.9 7502 chr3R 30679518 intergenic not near genes chr3R 30683269 intergenic not near genes chr3R 30687020 intergenic not near genes chr3R_8_30680001 chr3R_30680001 RAL-787 1525 chr3R 30778732 30778766 chr3R 30778827 30778860 5 92 4.0 3.0 3.5 1.1 128 chr3R 30778732 intron zfh1 + chr3R 30778796 intron zfh1 + chr3R 30778860 intron zfh1 + chr3R_5_30775001 chr3R_30775001 RAL-787 1526 chr3R 30818814 30818844 chr3R 30820379 30820405 1360 7 1564 3.0 3.0 3.0 1.8 1591 chr3R 30818814 intron cindr + chr3R 30819610 intron cindr + chr3R 30820405 intron cindr + chr3R_7_30815001 chr3R_30815001 RAL-787 1527 chr3R 30830520 30830543 chr3R 30830919 30830942 7 399 8.0 3.0 5.5 1.1 422 chr3R 30830520 intron CG15544 + chr3R 30830731 intron CG15544 + chr3R 30830942 intron CG15544 + chr3R_7_30830001 chr3R_30830001 RAL-787 1528 chr3R 30859415 30859426 chr3R 30859491 30859504 6 76 1.5 2.5 2.0 2.0 89 chr3R 30859415 intergenic not near genes chr3R 30859460 intergenic not near genes chr3R 30859504 intergenic not near genes chr3R_6_30855001 chr3R_30855001 RAL-787 1529 chr3R 30862428 30862453 chr3R 30862533 30862560 9 107 2.0 4.0 3.0 2.2 132 chr3R 30862428 intergenic not near genes chr3R 30862494 intergenic not near genes chr3R 30862560 intergenic not near genes chr3R_9_30860001 chr3R_30860001 RAL-787 1530 chr3R 30948080 30948097 chr3R 30948269 30948286 5 190 8.5 7.5 8.0 0.6 206 chr3R 30948080 intergenic not near genes chr3R 30948183 intergenic not near genes chr3R 30948286 intergenic not near genes chr3R_5_30945001 chr3R_30945001 RAL-787 1531 chr3R 30973132 30973158 chr3R 30973292 30973319 7 160 1.0 2.5 1.8 2.5 187 chr3R 30973132 intron 5-HT7 - chr3R 30973226 intron 5-HT7 - chr3R 30973319 intron 5-HT7 - chr3R_7_30970001 chr3R_30970001 RAL-787 1532 chr3R 30982608 30982628 chr3R 30982686 30982714 5 78 10.5 3.5 7.0 0.6 106 chr3R 30982608 intron 5-HT7 - chr3R 30982661 intron 5-HT7 - chr3R 30982714 intron 5-HT7 - chr3R_5_30980001 chr3R_30980001 RAL-787 1533 chr3R 30994136 30994153 chr3R 30994246 30994263 6 110 4.5 2.0 3.2 1.4 127 chr3R 30994136 intron 5-HT7 - chr3R 30994200 intron 5-HT7 - chr3R 30994263 intron 5-HT7 - chr3R_6_30990001 chr3R_30990001 RAL-787 1534 chr3R 31026495 31026522 chr3R 31026576 31026603 9 80 3.0 3.5 3.2 2.1 108 chr3R 31026495 intergenic not near genes chr3R 31026549 intergenic not near genes chr3R 31026603 intergenic not near genes chr3R_9_31025001 chr3R_31025001 RAL-787 1535 chr3R 31042110 31042129 chr3R 31042197 31042216 4 87 6.0 3.0 4.5 0.7 106 chr3R 31042110 intron CanA1 + chr3R 31042163 intron CanA1 + chr3R 31042216 intron CanA1 + chr3R_4_31040001 chr3R_31040001 RAL-787 1536 chr3R 31074231 31074251 chr3R 31081829 31081849 springer 6 7598 3.5 2.0 2.8 1.6 7618 chr3R 31074231 intron Sox100B + chr3R 31078040 intron Sox100B + chr3R 31081849 intron Sox100B + chr3R_6_31075001 chr3R_31075001 RAL-787 1537 chr3R 31188026 31188055 chr3R 31188128 31188141 4 96 2.5 7.0 4.8 0.7 115 chr3R 31188026 intron mesh - chr3R 31188084 intron mesh - chr3R 31188141 intron mesh - chr3R_4_31185001 chr3R_31185001 RAL-787 1538 chr3R 31279392 31279407 chr3R 31285563 31285594 diver 8 6182 2.0 1.5 1.8 2.9 6202 chr3R 31279392 intergenic not near genes chr3R 31282493 intergenic not near genes chr3R 31285594 intergenic not near genes chr3R_8_31280001 chr3R_31280001 RAL-787 1539 chr3R 31426886 31426911 chr3R 31426974 31427000 6 91 1.5 2.5 2.0 2.0 114 chr3R 31426886 intron Gprk2 + chr3R 31426943 intron Gprk2 + chr3R 31427000 intron Gprk2 + chr3R_6_31425001 chr3R_31425001 RAL-787 1540 chr3R 31435363 31435381 chr3R 31435515 31435533 9 152 5.5 2.0 3.8 1.9 170 chr3R 31435363 intron Gprk2 + chr3R 31435448 intron Gprk2 + chr3R 31435533 intron Gprk2 + chr3R_9_31435001 chr3R_31435001 RAL-787 1541 chr3R 31442270 31442296 chr3R 31442354 31442381 11 85 4.0 4.0 4.0 2.2 111 chr3R 31442270 intron Gprk2 + chr3R 31442326 intron Gprk2 + chr3R 31442381 intron Gprk2 + chr3R_11_31440001 chr3R_31440001 RAL-787 1542 chr3R 31528239 31528268 chr3R 31528437 31528467 4 198 2.5 5.0 3.8 0.8 228 chr3R 31528239 intergenic not near genes chr3R 31528353 intergenic not near genes chr3R 31528467 intergenic not near genes chr3R_4_31525001 chr3R_31525001 RAL-787 1543 chr3R 31691533 31691563 chr3R 31696299 31696315 Doc 7 4764 2.5 7.0 4.8 1.2 4782 chr3R 31691533 intergenic not near genes chr3R 31693924 intergenic not near genes chr3R 31696315 intergenic not near genes chr3R_7_31690001 chr3R_31690001 RAL-787 1544 chr3R 15633401 15633426 chr3R 31724859 31724885 6 16091458 16.5 11.5 14.0 0.4 16091484 chr3R 15633401 intergenic not near genes chr3R 23679143 exon CG10157 + chr3R 31724885 intron ttk + chr3R_6_23675001 chr3R_23675001 RAL-787 1545 chr3R 31858144 31858198 chr3R 31858222 31858301 12 81 2.0 2.5 2.2 3.8 157 chr3R 31858144 intron heph - chr3R 31858222 intron heph - chr3R 31858301 intron heph - chr3R_12_31855001 chr3R_31855001 RAL-787 1546 chr3R 31874847 31874876 chr3R 31874922 31874932 5 71 6.5 4.0 5.2 0.8 85 chr3R 31874847 intron heph - chr3R 31874890 intron heph - chr3R 31874932 intron heph - chr3R_5_31870001 chr3R_31870001 RAL-787 1547 chr3R 31951688 31951708 chr3R 31951763 31951788 4 78 1.5 5.0 3.2 1.0 100 chr3R 31951688 intron heph - chr3R 31951738 intron heph - chr3R 31951788 intron heph - chr3R_4_31950001 chr3R_31950001 RAL-787 1548 chr3R 31953139 31953178 chr3R 31953217 31953256 10 77 7.0 5.5 6.2 1.4 117 chr3R 31953139 intron heph - chr3R 31953198 intron heph - chr3R 31953256 intron heph - chr3R_10_31950001 chr3R_31950001 RAL-787 1549 chr3R 31954789 31954821 chr3R 31954892 31954924 8 104 1.0 1.5 1.2 3.6 135 chr3R 31954789 intron heph - chr3R 31954856 intron heph - chr3R 31954924 intron heph - chr3R_8_31950001 chr3R_31950001 RAL-787 1550 chr3R 31997992 31998025 chr3R 32005462 32005494 blood 9 7469 3.0 3.0 3.0 2.2 7502 chr3R 31997992 intron heph - chr3R 32001743 intron heph - chr3R 32005494 intron heph - chr3R_9_32000001 chr3R_32000001 RAL-787 1551 chr3R 32022334 32022356 chr3R 32022436 32022458 7 98 2.0 6.0 4.0 1.4 124 chr3R 32022334 5` UTR CR45557 + chr3R 32022396 5` UTR CR45557 + chr3R 32022458 5` UTR CR45557 + chr3R_7_32020001 chr3R_32020001 RAL-787 1552 chr3R 32063034 32063051 chr3R 32063114 32063137 4 84 2.0 3.5 2.8 1.1 103 chr3R 32063034 intron Map205 - chr3R 32063086 intron Map205 - chr3R 32063137 intron Map205 - chr3R_4_32060001 chr3R_32060001 RAL-787 1553 chr4 671607 671633 chr4 680190 680215 Tirant 10 8582 1.5 3.5 2.5 2.9 8608 chr4 671607 intron CG11360 + chr4 675911 intron CG11360 + chr4 680215 intron CG11360 + chr4_10_675001 chr4_675001 RAL-787 1554 chr4 959624 959655 chr4 959800 959829 5 177 2.0 0.5 1.2 2.3 205 chr4 959624 intergenic CR44030 +,CR45201 - chr4 959726 5` UTR CR44030 + chr4 959829 5` UTR CR44030 + chr4_5_955001 chr4_955001 RAL-787 1555 chrX 428421 428452 chrX 434604 434637 3S18 5 6184 1.5 2.0 1.8 1.8 6216 chrX 428421 intron CG32816 - chrX 431529 intron CG32816 - chrX 434637 intron CG32816 - chrX_5_430001 chrX_430001 RAL-787 1556 chrX 449897 449907 chrX 449991 450003 4 96 6.5 2.0 4.2 0.8 106 chrX 449897 intron CG32816 - chrX 449950 intron CG32816 - chrX 450003 intron CG32816 - chrX_4_445001 chrX_445001 RAL-787 1557 chrX 551430 551446 chrX 558992 559008 412 4 7558 4.5 2.0 3.2 1.0 7578 chrX 551430 intron Appl + chrX 555219 intron Appl + chrX 559008 intron Appl + chrX_4_555001 chrX_555001 RAL-787 1558 chrX 569352 569374 chrX 569467 569487 5 106 1.5 5.5 3.5 1.1 135 chrX 569352 intron Appl + chrX 569420 intron Appl + chrX 569487 intron Appl + chrX_5_565001 chrX_565001 RAL-787 1559 chrX 611134 611167 chrX 611224 611256 8 90 0.0 3.0 1.5 3.2 122 chrX 611134 intron CG13366 - chrX 611195 intron CG13366 - chrX 611256 intron CG13366 - chrX_8_610001 chrX_610001 RAL-787 1560 chrX 670262 670286 chrX 670342 670366 7 80 0.0 0.5 0.2 5.8 104 chrX 670262 intergenic not near genes chrX 670314 intergenic not near genes chrX 670366 intergenic not near genes chrX_7_670001 chrX_670001 RAL-787 1561 chrX 680837 680867 chrX 680920 680950 10 81 4.0 3.0 3.5 2.2 113 chrX 680837 intergenic not near genes chrX 680894 intergenic not near genes chrX 680950 intergenic not near genes chrX_10_680001 chrX_680001 RAL-787 1562 chrX 695292 695318 chrX 695369 695390 7 73 2.0 3.5 2.8 1.8 98 chrX 695292 intron sdk + chrX 695341 intron sdk + chrX 695390 intron sdk + chrX_7_695001 chrX_695001 RAL-787 1563 chrX 778142 778159 chrX 778223 778228 4 82 1.5 0.0 0.8 2.2 86 chrX 778142 intron fz3 + chrX 778185 intron fz3 + chrX 778228 intron fz3 + chrX_4_775001 chrX_775001 RAL-787 1564 chrX 802311 802318 chrX 802368 802395 4 70 4.5 6.5 5.5 0.6 84 chrX 802311 exon CG13359 - chrX 802353 exon CG13359 - chrX 802395 exon CG13359 - chrX_4_800001 chrX_800001 RAL-787 1565 chrX 806782 806812 chrX 806878 806904 6 92 1.5 2.0 1.8 2.1 122 chrX 806782 intron Sec22 + chrX 806843 intron Sec22 + chrX 806904 intron Sec22 + chrX_6_805001 chrX_805001 RAL-787 1566 chrX 827599 827630 chrX 835391 835421 roo 6 7792 3.5 1.0 2.2 1.9 7822 chrX 827599 intron CG43867 - chrX 831510 intron CG43867 - chrX 835421 intron CG43867 - chrX_6_830001 chrX_830001 RAL-787 1567 chrX 906702 906718 chrX 908490 908506 S-element 7 1789 2.0 7.0 4.5 1.3 1804 chrX 906702 intron CG43867 - chrX 907604 intron CG43867 - chrX 908506 intron CG43867 - chrX_7_905001 chrX_905001 RAL-787 1568 chrX 1357777 1357808 chrX 1367946 1367978 Doc 10 10169 1.5 4.5 3.0 2.5 10201 chrX 1357777 intergenic png - chrX 1362878 intergenic not near genes chrX 1367978 intergenic not near genes chrX_10_1360001 chrX_1360001 RAL-787 1569 chrX 1402264 1402283 chrX 1402621 1402634 5 355 2.0 1.0 1.5 2.0 370 chrX 1402264 intergenic not near genes chrX 1402449 intergenic not near genes chrX 1402634 intergenic not near genes chrX_5_1400001 chrX_1400001 RAL-787 1570 chrX 1428591 1428625 chrX 1428677 1428711 15 86 1.0 4.5 2.8 3.9 120 chrX 1428591 intron futsch + chrX 1428651 intron futsch + chrX 1428711 intron futsch + chrX_15_1425001 chrX_1425001 RAL-787 1571 chrX 1518034 1518069 chrX 1523436 1523470 jockey 9 5399 4.5 2.5 3.5 2.0 5436 chrX 1518034 intergenic inc + chrX 1520752 intergenic not near genes chrX 1523470 intergenic not near genes chrX_9_1520001 chrX_1520001 RAL-787 1572 chrX 1627972 1628007 chrX 1635440 1635467 gtwin 10 7464 2.5 2.0 2.2 3.1 7495 chrX 1627972 intron,intron Mur2B -,br + chrX 1631720 intron,intron Mur2B -,br + chrX 1635467 intron,intron Mur2B -,br + chrX_10_1630001 chrX_1630001 RAL-787 1573 chrX 1903272 1903287 chrX 1903351 1903367 5 79 4.0 4.0 4.0 1.0 95 chrX 1903272 5` UTR CR43864 + chrX 1903320 5` UTR CR43864 + chrX 1903367 5` UTR CR43864 + chrX_5_1900001 chrX_1900001 RAL-787 1574 chrX 2069366 2069401 chrX 2069466 2069501 10 99 1.5 1.0 1.2 4.5 135 chrX 2069366 intron,exon CG4199 -,CG4194 + chrX 2069434 intron,3` UTR CG4199 -,CG4194 + chrX 2069501 intron,3` UTR CG4199 -,CG4194 + chrX_10_2065001 chrX_2065001 RAL-787 1575 chrX 2096363 2096384 chrX 2096456 2096476 4 93 1.5 2.5 2.0 1.3 113 chrX 2096363 intron csw + chrX 2096420 intron csw + chrX 2096476 intron csw + chrX_4_2095001 chrX_2095001 RAL-787 1576 chrX 2296618 2296654 chrX 2296723 2296746 7 98 2.0 2.0 2.0 2.3 128 chrX 2296618 intron phl + chrX 2296682 intron phl + chrX 2296746 intron phl + chrX_7_2295001 chrX_2295001 RAL-787 1577 chrX 2397922 2397936 chrX 2398016 2398020 7 91 2.0 0.0 1.0 3.5 98 chrX 2397922 intergenic not near genes chrX 2397971 intergenic not near genes chrX 2398020 intergenic not near genes chrX_7_2395001 chrX_2395001 RAL-787 1578 chrX 2399844 2399870 chrX 2408197 2408203 roo 6 8346 2.5 5.5 4.0 1.2 8359 chrX 2399844 intergenic not near genes chrX 2404024 intergenic not near genes chrX 2408203 intergenic not near genes chrX_6_2400001 chrX_2400001 RAL-787 1579 chrX 2419698 2419723 chrX 2419786 2419811 6 88 3.5 1.0 2.2 1.9 113 chrX 2419698 intergenic not near genes chrX 2419754 intergenic not near genes chrX 2419811 intergenic not near genes chrX_6_2415001 chrX_2415001 RAL-787 1580 chrX 2578806 2578844 chrX 2578898 2578933 6 91 2.5 0.0 1.2 2.7 127 chrX 2578806 intergenic Pdfr +,Vha36-3 - chrX 2578870 intergenic Vha36-3 -,Pdfr + chrX 2578933 intergenic Vha36-3 -,Pdfr + chrX_6_2575001 chrX_2575001 RAL-787 1581 chrX 2635389 2635401 chrX 2635498 2635510 4 107 1.0 5.5 3.2 1.0 121 chrX 2635389 intron sgg + chrX 2635450 intron sgg + chrX 2635510 intron sgg + chrX_4_2635001 chrX_2635001 RAL-787 1582 chrX 2888117 2888137 chrX 2888194 2888215 4 78 2.5 3.0 2.8 1.1 98 chrX 2888117 intron kirre + chrX 2888166 intron kirre + chrX 2888215 intron kirre + chrX_4_2885001 chrX_2885001 RAL-787 1583 chrX 3203468 3203489 chrX 3203663 3203688 9 198 1.5 4.5 3.0 2.2 220 chrX 3203468 intron dnc + chrX 3203578 intron dnc + chrX 3203688 intron dnc + chrX_9_3200001 chrX_3200001 RAL-787 1584 chrX 3351804 3351812 chrX 3351890 3351898 5 86 3.0 6.0 4.5 0.9 94 chrX 3351804 intergenic not near genes chrX 3351851 intergenic not near genes chrX 3351898 intergenic not near genes chrX_5_3350001 chrX_3350001 RAL-787 1585 chrX 3408985 3409008 chrX 3409062 3409084 6 77 0.0 3.5 1.8 2.1 99 chrX 3408985 intron,intron CR44999 +,CG12535 - chrX 3409034 intron,intron CR44999 +,CG12535 - chrX 3409084 intron,intron CR44999 +,CG12535 - chrX_6_3405001 chrX_3405001 RAL-787 1586 chrX 3415030 3415044 chrX 3421212 3421229 3S18 4 6184 1.5 4.5 3.0 1.0 6199 chrX 3415030 intron,intron CR44999 +,CG12535 - chrX 3418130 intron,intron CR44999 +,CG12535 - chrX 3421229 intron,intron CR44999 +,CG12535 - chrX_4_3415001 chrX_3415001 RAL-787 1587 chrX 3493089 3493121 chrX 3502248 3502280 roo 4 9159 2.0 1.5 1.8 1.4 9191 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502280 intron,intron CR44999 +,Gas8 - chrX_4_3495001 chrX_3495001 RAL-787 1588 chrX 3597552 3597583 chrX 3619720 3619745 roo 9 22167 2.0 3.5 2.8 2.4 22193 chrX 3597552 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619745 intron AstA-R1 + chrX_9_3605001 chrX_3605001 RAL-787 1589 chrX 3986870 3986891 chrX 3994501 3994524 412 10 7632 1.5 4.0 2.8 2.6 7654 chrX 3986870 intergenic not near genes chrX 3990697 intergenic not near genes chrX 3994524 intergenic not near genes chrX_10_3990001 chrX_3990001 RAL-787 1590 chrX 4029539 4029556 chrX 4029723 4029743 9 189 2.5 5.0 3.8 1.9 204 chrX 4029539 intergenic not near genes chrX 4029641 intergenic not near genes chrX 4029743 intergenic not near genes chrX_9_4025001 chrX_4025001 RAL-787 1591 chrX 4047471 4047505 chrX 4047584 4047618 8 113 2.5 1.5 2.0 2.7 147 chrX 4047471 intergenic CR45482 - chrX 4047544 intergenic CR45482 - chrX 4047618 3` UTR CR45482 - chrX_8_4045001 chrX_4045001 RAL-787 1592 chrX 4048500 4048527 chrX 4048575 4048603 4 74 3.0 1.5 2.2 1.2 103 chrX 4048500 3` UTR CR45482 - chrX 4048552 3` UTR CR45482 - chrX 4048603 3` UTR CR45482 - chrX_4_4045001 chrX_4045001 RAL-787 1593 chrX 4252949 4252971 chrX 4253037 4253059 7 88 1.5 5.0 3.2 1.7 110 chrX 4252949 intergenic CG15576 - chrX 4253004 intergenic CG15576 - chrX 4253059 intergenic CG15576 - chrX_7_4250001 chrX_4250001 RAL-787 1594 chrX 4262755 4262785 chrX 4262854 4262884 10 99 2.5 2.0 2.2 3.1 129 chrX 4262755 intergenic not near genes chrX 4262820 intergenic not near genes chrX 4262884 intergenic not near genes chrX_10_4260001 chrX_4260001 RAL-787 1595 chrX 4352361 4352391 chrX 4378897 4378927 7 26536 18.5 23.5 21.0 0.3 26566 chrX 4352361 intron norpA + chrX 4365644 intergenic mir-982 -,norpA + chrX 4378927 intergenic not near genes chrX_7_4365001 chrX_4365001 RAL-787 1596 chrX 4396988 4397008 chrX 4397073 4397093 5 85 2.5 2.0 2.2 1.6 105 chrX 4396988 intron CR32773 - chrX 4397040 intron CR32773 - chrX 4397093 intron CR32773 - chrX_5_4395001 chrX_4395001 RAL-787 1597 chrX 4700396 4700425 chrX 4700739 4700768 jockey 6 342 1.5 2.0 1.8 2.1 372 chrX 4700396 3` UTR ctp + chrX 4700582 3` UTR ctp + chrX 4700768 3` UTR ctp + chrX_6_4700001 chrX_4700001 RAL-787 1598 chrX 4723577 4723585 chrX 4723657 4723660 5 78 3.0 5.0 4.0 1.0 83 chrX 4723577 intron Proc-R + chrX 4723618 intron Proc-R + chrX 4723660 intron Proc-R + chrX_5_4720001 chrX_4720001 RAL-787 1599 chrX 4792381 4792400 chrX 4792814 4792832 jockey 8 432 1.5 2.5 2.0 2.7 451 chrX 4792381 intergenic not near genes chrX 4792606 intergenic not near genes chrX 4792832 intergenic not near genes chrX_8_4790001 chrX_4790001 RAL-787 1600 chrX 4827974 4828002 chrX 4835345 4835373 Stalker4 5 7367 2.5 3.0 2.8 1.3 7399 chrX 4827974 intergenic not near genes chrX 4831674 intergenic not near genes chrX 4835373 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-787 1601 chrX 4856145 4856148 chrX 4856223 4856226 5 78 2.5 7.0 4.8 0.9 81 chrX 4856145 intron CG42594 + chrX 4856186 intron CG42594 + chrX 4856226 intron CG42594 + chrX_5_4855001 chrX_4855001 RAL-787 1602 chrX 5206301 5206328 chrX 5206573 5206600 6 272 1.5 2.5 2.0 2.0 299 chrX 5206301 intron,intron CG15465 +,rg + chrX 5206450 intron,intron CG15465 +,rg + chrX 5206600 intron,intron CG15465 +,rg + chrX_6_5205001 chrX_5205001 RAL-787 1603 chrX 5220408 5220417 chrX 5220632 5220636 5 233 0.5 3.0 1.8 1.8 228 chrX 5220408 intron,intron CG15465 +,rg + chrX 5220522 intron,intron CG15465 +,rg + chrX 5220636 intron,intron CG15465 +,rg + chrX_5_5220001 chrX_5220001 RAL-787 1604 chrX 5473585 5473611 chrX 5473661 5473687 7 76 1.5 0.5 1.0 3.5 102 chrX 5473585 intron SPR + chrX 5473636 intron SPR + chrX 5473687 intron SPR + chrX_7_5470001 chrX_5470001 RAL-787 1605 chrX 5524852 5524873 chrX 5528714 5528736 412 7 3862 1.0 1.5 1.2 3.2 3884 chrX 5524852 intergenic snoRNA:Psi28S-3342 - chrX 5526794 intergenic not near genes chrX 5528736 intergenic Vsx2 - chrX_7_5525001 chrX_5525001 RAL-787 1606 chrX 5555385 5555393 chrX 5555498 5555509 4 116 2.5 3.0 2.8 1.1 124 chrX 5555385 intron Vsx2 - chrX 5555447 intron Vsx2 - chrX 5555509 intron Vsx2 - chrX_4_5555001 chrX_5555001 RAL-787 1607 chrX 5798861 5798884 chrX 5799023 5799043 4 160 1.0 3.5 2.2 1.2 182 chrX 5798861 intergenic not near genes chrX 5798952 intergenic not near genes chrX 5799043 intergenic not near genes chrX_4_5795001 chrX_5795001 RAL-787 1608 chrX 5830592 5830605 chrX 5830669 5830687 5 79 2.5 0.0 1.2 2.3 95 chrX 5830592 intron CG15765 + chrX 5830640 intron CG15765 + chrX 5830687 intron CG15765 + chrX_5_5830001 chrX_5830001 RAL-787 1609 chrX 6280796 6280821 chrX 6280897 6280921 7 100 1.0 0.5 0.8 3.9 125 chrX 6280796 intergenic not near genes chrX 6280858 intergenic not near genes chrX 6280921 intergenic not near genes chrX_7_6280001 chrX_6280001 RAL-787 1610 chrX 6335221 6335239 chrX 6337730 6337748 Tirant 5 2510 0.5 2.0 1.2 2.3 2527 chrX 6335221 intergenic not near genes chrX 6336484 intergenic not near genes chrX 6337748 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-787 1611 chrX 6370699 6370726 chrX 6370806 6370833 4 106 2.0 3.0 2.5 1.1 134 chrX 6370699 3` UTR,3` UTR Marf +,CR44816 - chrX 6370766 3` UTR,3` UTR Marf +,CR44816 - chrX 6370833 3` UTR,3` UTR Marf +,CR44816 - chrX_4_6370001 chrX_6370001 RAL-787 1612 chrX 6392868 6392902 chrX 6397633 6397667 Doc 15 4764 1.0 0.0 0.5 10.0 4799 chrX 6392868 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397667 intergenic not near genes chrX_15_6395001 chrX_6395001 RAL-787 1613 chrX 6562833 6562849 chrX 6571300 6571331 Tirant 4 8476 5.0 2.5 3.8 0.8 8498 chrX 6562833 intron CG34417 + chrX 6567082 intron CG34417 + chrX 6571331 intron CG34417 + chrX_4_6565001 chrX_6565001 RAL-787 1614 chrX 6605481 6605509 chrX 6608499 6608531 Burdock 5 3021 2.0 3.5 2.8 1.3 3050 chrX 6605481 intron pigs + chrX 6607006 intron pigs + chrX 6608531 intron pigs + chrX_5_6605001 chrX_6605001 RAL-787 1615 chrX 6737530 6737547 chrX 6737610 6737628 5 79 3.0 3.0 3.0 1.2 98 chrX 6737530 intron CG3168 - chrX 6737579 intron CG3168 - chrX 6737628 intron CG3168 - chrX_5_6735001 chrX_6735001 RAL-787 1616 chrX 6897592 6897707 chrX 6897670 6897817 4 86 0.5 0.5 0.5 2.7 225 chrX 6897592 intergenic not near genes chrX 6897704 intergenic not near genes chrX 6897817 intergenic not near genes chrX_4_6895001 chrX_6895001 RAL-787 1617 chrX 6989510 6989522 chrX 6989597 6989600 5 85 4.0 1.0 2.5 1.4 90 chrX 6989510 intron ogre - chrX 6989555 intron ogre - chrX 6989600 intron ogre - chrX_5_6985001 chrX_6985001 RAL-787 1618 chrX 7023601 7023625 chrX 7030991 7031015 Tabor 7 7389 3.5 3.0 3.2 1.7 7414 chrX 7023601 intron CG12541 - chrX 7027308 intron CG12541 - chrX 7031015 intron CG12541 - chrX_7_7025001 chrX_7025001 RAL-787 1619 chrX 7125249 7125271 chrX 7134407 7134430 roo 4 9158 1.5 4.0 2.8 1.1 9181 chrX 7125249 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134430 intergenic not near genes chrX_4_7125001 chrX_7125001 RAL-787 1620 chrX 7570636 7570664 chrX 7570770 7570796 8 133 1.5 1.0 1.2 3.6 160 chrX 7570636 intergenic not near genes chrX 7570716 intergenic not near genes chrX 7570796 intergenic not near genes chrX_8_7570001 chrX_7570001 RAL-787 1621 chrX 7752930 7752955 chrX 7753003 7753031 7 76 3.5 1.5 2.5 2.0 101 chrX 7752930 intergenic not near genes chrX 7752980 intergenic not near genes chrX 7753031 intergenic not near genes chrX_7_7750001 chrX_7750001 RAL-787 1622 chrX 7845729 7845754 chrX 7847220 7847245 hopper2 4 1488 4.0 2.5 3.2 1.0 1516 chrX 7845729 intergenic not near genes chrX 7846487 intergenic not near genes chrX 7847245 intergenic not near genes chrX_4_7845001 chrX_7845001 RAL-787 1623 chrX 8092286 8092320 chrX 8092371 8092385 6 81 1.0 1.0 1.0 3.0 99 chrX 8092286 intron Ubc-E2H - chrX 8092336 intron Ubc-E2H - chrX 8092385 intron Ubc-E2H - chrX_6_8090001 chrX_8090001 RAL-787 1624 chrX 8371156 8371164 chrX 8371317 8371325 4 162 3.5 0.0 1.8 1.4 169 chrX 8371156 intergenic not near genes chrX 8371240 intergenic not near genes chrX 8371325 intergenic not near genes chrX_4_8370001 chrX_8370001 RAL-787 1625 chrX 8382887 8382922 chrX 8383030 8383064 5 143 2.5 2.0 2.2 1.6 177 chrX 8382887 intergenic not near genes chrX 8382976 intergenic not near genes chrX 8383064 intergenic not near genes chrX_5_8380001 chrX_8380001 RAL-787 1626 chrX 8577290 8577323 chrX 8577380 8577415 4 86 2.0 0.5 1.2 1.8 125 chrX 8577290 intron CG12065 + chrX 8577352 intron CG12065 + chrX 8577415 intron CG12065 + chrX_4_8575001 chrX_8575001 RAL-787 1627 chrX 8730452 8730468 chrX 8730528 8730544 13 76 1.0 9.0 5.0 2.2 92 chrX 8730452 intergenic not near genes chrX 8730498 intergenic not near genes chrX 8730544 intergenic not near genes chrX_13_8730001 chrX_8730001 RAL-787 1628 chrX 8888646 8888658 chrX 8888723 8888735 4 77 4.0 1.0 2.5 1.1 89 chrX 8888646 intron Moe - chrX 8888690 intron Moe - chrX 8888735 intron Moe - chrX_4_8885001 chrX_8885001 RAL-787 1629 chrX 8922331 8922343 chrX 8922764 8922776 jockey 6 434 2.0 5.5 3.8 1.2 445 chrX 8922331 intron rdgA + chrX 8922554 intron rdgA + chrX 8922776 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-787 1630 chrX 8922346 8922358 chrX 8922762 8922792 jockey 4 429 1.0 4.5 2.8 1.1 446 chrX 8922346 intron rdgA + chrX 8922569 intron rdgA + chrX 8922792 intron rdgA + chrX_4_8920001 chrX_8920001 RAL-787 1631 chrX 8948764 8948789 chrX 8956274 8956299 roo 5 7509 2.0 2.0 2.0 1.7 7535 chrX 8948764 intron rdgA + chrX 8952532 intron rdgA + chrX 8956299 intron rdgA + chrX_5_8950001 chrX_8950001 RAL-787 1632 chrX 9024393 9024405 chrX 9024475 9024480 6 80 4.0 1.5 2.8 1.6 87 chrX 9024393 exon,intron rdgA +,CR43836 - chrX 9024436 intron,intron rdgA +,CR43836 - chrX 9024480 intron,intron rdgA +,CR43836 - chrX_6_9020001 chrX_9020001 RAL-787 1633 chrX 9473848 9473883 chrX 9474083 9474117 7 227 0.5 1.5 1.0 3.5 269 chrX 9473848 intron mgl - chrX 9473982 intron mgl - chrX 9474117 intron mgl - chrX_7_9470001 chrX_9470001 RAL-787 1634 chrX 9508134 9508171 chrX 9509652 9509674 jockey 5 1514 0.5 1.0 0.8 2.8 1540 chrX 9508134 intron CG32700 - chrX 9508904 intron CG32700 - chrX 9509674 intron CG32700 - chrX_5_9505001 chrX_9505001 RAL-787 1635 chrX 9543402 9543421 chrX 9543481 9543496 4 78 0.5 0.5 0.5 2.7 94 chrX 9543402 intron CG32700 - chrX 9543449 intron CG32700 - chrX 9543496 intron CG32700 - chrX_4_9540001 chrX_9540001 RAL-787 1636 chrX 9575794 9575824 chrX 9576115 9576148 mdg3 10 322 1.0 4.0 2.5 2.9 354 chrX 9575794 intron,exon CG32699 -,CG42395 - chrX 9575971 intron,intron CG32699 -,CG42395 - chrX 9576148 intron,5` UTR CG32699 -,CG42395 - chrX_10_9575001 chrX_9575001 RAL-787 1637 chrX 9599182 9599202 chrX 9599260 9599280 4 76 3.0 4.0 3.5 0.9 98 chrX 9599182 intergenic not near genes chrX 9599231 intergenic not near genes chrX 9599280 intergenic not near genes chrX_4_9595001 chrX_9595001 RAL-787 1638 chrX 9784174 9784207 chrX 9784361 9784394 10 185 1.5 2.0 1.8 3.6 220 chrX 9784174 intron CG32698 + chrX 9784284 intron CG32698 + chrX 9784394 intron CG32698 + chrX_10_9780001 chrX_9780001 RAL-787 1639 chrX 10065487 10065504 chrX 10065633 10065650 7 145 3.5 0.0 1.8 2.5 163 chrX 10065487 intron CG15312 - chrX 10065568 intron CG15312 - chrX 10065650 intron CG15312 - chrX_7_10065001 chrX_10065001 RAL-787 1640 chrX 10218305 10218319 chrX 10218865 10218882 5 563 0.0 0.5 0.2 4.2 577 chrX 10218305 exon,5` UTR CG15308 -,CR45629 + chrX 10218594 intron,intron CG15308 -,CR45629 + chrX 10218882 intron,5` UTR CG15308 -,CR45629 + chrX_5_10215001 chrX_10215001 RAL-787 1641 chrX 10431338 10431366 chrX 10431418 10431446 6 80 1.0 2.0 1.5 2.4 108 chrX 10431338 intron CG32683 - chrX 10431392 intron CG32683 - chrX 10431446 intron CG32683 - chrX_6_10430001 chrX_10430001 RAL-787 1642 chrX 10550335 10550367 chrX 10550413 10550445 10 78 1.0 0.5 0.8 5.6 110 chrX 10550335 intron spri - chrX 10550390 intron spri - chrX 10550445 intron spri - chrX_10_10550001 chrX_10550001 RAL-787 1643 chrX 10550856 10550889 chrX 10552323 10552354 hobo 7 1466 0.5 1.0 0.8 3.9 1498 chrX 10550856 intron spri - chrX 10551605 intron spri - chrX 10552354 intron spri - chrX_7_10550001 chrX_10550001 RAL-787 1644 chrX 10686057 10686080 chrX 10691194 10691217 roo 6 5136 2.0 4.0 3.0 1.5 5160 chrX 10686057 intron X11Lbeta + chrX 10688637 intron X11Lbeta + chrX 10691217 intron X11Lbeta + chrX_6_10685001 chrX_10685001 RAL-787 1645 chrX 10772689 10772696 chrX 10772761 10772769 Tirant 4 77 1.0 0.0 0.5 2.7 80 chrX 10772689 intron CG15211 + chrX 10772729 intron CG15211 + chrX 10772769 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-787 1646 chrX 11051475 11051491 chrX 11051540 11051570 9 76 0.5 3.5 2.0 3.0 95 chrX 11051475 intergenic not near genes chrX 11051522 intergenic not near genes chrX 11051570 intergenic not near genes chrX_9_11050001 chrX_11050001 RAL-787 1647 chrX 11141989 11142092 chrX 11142062 11142167 6 75 0.0 0.0 0.0 6.0 178 chrX 11141989 intergenic CG15199 - chrX 11142078 intergenic CG15199 -,CG15202 + chrX 11142167 intergenic CG15199 -,CG15202 + chrX_6_11140001 chrX_11140001 RAL-787 1648 chrX 11152919 11152934 chrX 11154446 11154469 5 1526 12.0 21.5 16.8 0.3 1550 chrX 11152919 3` UTR rtv - chrX 11153694 5` UTR rtv - chrX 11154469 5` UTR Dlic + chrX_5_11150001 chrX_11150001 RAL-787 1649 chrX 11205304 11205323 chrX 11205380 11205397 5 76 1.5 2.5 2.0 1.7 93 chrX 11205304 intergenic not near genes chrX 11205350 intergenic not near genes chrX 11205397 intergenic not near genes chrX_5_11205001 chrX_11205001 RAL-787 1650 chrX 11214987 11215006 chrX 11215350 11215369 11 363 2.5 2.0 2.2 3.4 382 chrX 11214987 intergenic not near genes chrX 11215178 intergenic not near genes chrX 11215369 intergenic not near genes chrX_11_11215001 chrX_11215001 RAL-787 1651 chrX 11254170 11254203 chrX 11254281 11254314 10 111 2.5 2.5 2.5 2.9 144 chrX 11254170 intron CG44422 - chrX 11254242 intron CG44422 - chrX 11254314 intron CG44422 - chrX_10_11250001 chrX_11250001 RAL-787 1652 chrX 11312064 11312089 chrX 11319417 11319429 Stalker2 5 7345 1.0 1.0 1.0 2.5 7365 chrX 11312064 intergenic not near genes chrX 11315746 intergenic not near genes chrX 11319429 intergenic not near genes chrX_5_11315001 chrX_11315001 RAL-787 1653 chrX 11499129 11499132 chrX 11499207 11499209 4 77 0.0 3.0 1.5 1.6 80 chrX 11499129 intron Drak + chrX 11499169 intron Drak + chrX 11499209 intron Drak + chrX_4_11495001 chrX_11495001 RAL-787 1654 chrX 11554861 11554875 chrX 11555281 11555291 4 418 4.0 12.5 8.2 0.4 430 chrX 11554861 3` UTR Drak + chrX 11555076 3` UTR CG1572 - chrX 11555291 3` UTR CG1572 - chrX_4_11555001 chrX_11555001 RAL-787 1655 chrX 11571460 11571484 chrX 11571697 11571721 pogo 5 237 2.0 4.5 3.2 1.2 261 chrX 11571460 3` UTR Kmn1 - chrX 11571590 3` UTR Kmn1 - chrX 11571721 3` UTR Kmn1 - chrX_5_11570001 chrX_11570001 RAL-787 1656 chrX 11627832 11627866 chrX 11627923 11627957 8 90 0.5 0.0 0.2 6.7 125 chrX 11627832 intron Ptp10D + chrX 11627894 intron Ptp10D + chrX 11627957 intron Ptp10D + chrX_8_11625001 chrX_11625001 RAL-787 1657 chrX 11629750 11629762 chrX 11629836 11629848 5 86 3.0 0.0 1.5 2.0 98 chrX 11629750 intron Ptp10D + chrX 11629799 intron Ptp10D + chrX 11629848 intron Ptp10D + chrX_5_11625001 chrX_11625001 RAL-787 1658 chrX 11633419 11633449 chrX 11640473 11640503 297 10 7054 0.5 1.0 0.8 5.6 7084 chrX 11633419 intron Ptp10D + chrX 11636961 intron Ptp10D + chrX 11640503 intron Ptp10D + chrX_10_11635001 chrX_11635001 RAL-787 1659 chrX 11804679 11804690 chrX 11804783 11804794 4 104 1.5 0.0 0.8 2.2 115 chrX 11804679 intron Hsc70-3 - chrX 11804736 intron Hsc70-3 - chrX 11804794 intron Hsc70-3 - chrX_4_11800001 chrX_11800001 RAL-787 1660 chrX 12150546 12150580 chrX 12150628 12150661 10 79 1.0 4.0 2.5 2.9 115 chrX 12150546 intron Ten-a + chrX 12150604 intron Ten-a + chrX 12150661 intron Ten-a + chrX_10_12150001 chrX_12150001 RAL-787 1661 chrX 12168138 12168161 chrX 12173580 12173603 I-element 6 5442 1.0 2.0 1.5 2.4 5465 chrX 12168138 intron Ten-a + chrX 12170870 intron Ten-a + chrX 12173603 intron Ten-a + chrX_6_12170001 chrX_12170001 RAL-787 1662 chrX 12176737 12176762 chrX 12176813 12176838 8 74 2.5 2.5 2.5 2.3 101 chrX 12176737 intron,3` UTR Ten-a +,CG1924 - chrX 12176788 intron,3` UTR Ten-a +,CG1924 - chrX 12176838 intron,3` UTR Ten-a +,CG1924 - chrX_8_12175001 chrX_12175001 RAL-787 1663 chrX 12271722 12271755 chrX 12271806 12271816 8 72 3.5 1.5 2.5 2.3 94 chrX 12271722 intron Ten-a + chrX 12271769 intron Ten-a + chrX 12271816 intron Ten-a + chrX_8_12270001 chrX_12270001 RAL-787 1664 chrX 12301959 12301965 chrX 12303264 12303270 X-element 5 1306 3.0 2.0 2.5 1.4 1311 chrX 12301959 intron Ten-a + chrX 12302614 intron Ten-a + chrX 12303270 intron Ten-a + chrX_5_12300001 chrX_12300001 RAL-787 1665 chrX 12301966 12301991 chrX 12303261 12303289 X-element 9 1299 1.0 2.0 1.5 3.6 1323 chrX 12301966 intron Ten-a + chrX 12302628 intron Ten-a + chrX 12303289 intron Ten-a + chrX_9_12300001 chrX_12300001 RAL-787 1666 chrX 12350775 12350803 chrX 12350856 12350884 6 81 3.5 0.0 1.8 2.1 109 chrX 12350775 intergenic not near genes chrX 12350830 intergenic not near genes chrX 12350884 intergenic not near genes chrX_6_12350001 chrX_12350001 RAL-787 1667 chrX 12533812 12533823 chrX 12533887 12533899 4 76 0.0 1.5 0.8 2.2 87 chrX 12533812 intron CG43921 - chrX 12533856 intron CG43921 - chrX 12533899 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-787 1668 chrX 12557156 12557160 chrX 12557231 12557236 5 75 2.5 3.5 3.0 1.2 80 chrX 12557156 intron CG43921 - chrX 12557196 intron CG43921 - chrX 12557236 intron CG43921 - chrX_5_12555001 chrX_12555001 RAL-787 1669 chrX 12785425 12785454 chrX 12785502 12785531 6 77 1.5 3.0 2.2 1.9 106 chrX 12785425 intergenic Pde9 -,CG32647 - chrX 12785478 intergenic Pde9 - chrX 12785531 intergenic Pde9 - chrX_6_12785001 chrX_12785001 RAL-787 1670 chrX 12858634 12858653 chrX 12858727 12858746 9 91 1.5 1.0 1.2 4.1 112 chrX 12858634 intron Pde9 - chrX 12858690 intron Pde9 - chrX 12858746 intron Pde9 - chrX_9_12855001 chrX_12855001 RAL-787 1671 chrX 12964796 12964811 chrX 12964880 12964895 5 84 0.0 4.0 2.0 1.7 99 chrX 12964796 intergenic not near genes chrX 12964846 intergenic not near genes chrX 12964895 intergenic not near genes chrX_5_12960001 chrX_12960001 RAL-787 1672 chrX 12971693 12971720 chrX 12971765 12971790 6 70 2.5 3.5 3.0 1.5 97 chrX 12971693 intron,exon CR43636 -,CG15721 + chrX 12971742 intron,exon CR43636 -,CG15721 + chrX 12971790 intron,exon CR43636 -,CG15721 + chrX_6_12970001 chrX_12970001 RAL-787 1673 chrX 13061362 13061375 chrX 13061473 13061486 4 111 0.0 0.5 0.2 3.3 124 chrX 13061362 intron rad + chrX 13061424 intron rad + chrX 13061486 intron rad + chrX_4_13060001 chrX_13060001 RAL-787 1674 chrX 13116098 13116120 chrX 13116218 13116239 6 119 2.0 2.0 2.0 2.0 141 chrX 13116098 intron CG42237 + chrX 13116168 intron CG42237 + chrX 13116239 intron CG42237 + chrX_6_13115001 chrX_13115001 RAL-787 1675 chrX 13161710 13161720 chrX 13161773 13161797 4 73 0.5 2.0 1.2 1.8 87 chrX 13161710 3` UTR CG12096 + chrX 13161754 3` UTR,3` UTR CG12096 +,CG34411 - chrX 13161797 3` UTR,3` UTR CG12096 +,CG34411 - chrX_4_13160001 chrX_13160001 RAL-787 1676 chrX 13172350 13172378 chrX 13172426 13172453 9 75 2.0 2.0 2.0 3.0 103 chrX 13172350 exon CG34411 - chrX 13172402 intron CG34411 - chrX 13172453 intron CG34411 - chrX_9_13170001 chrX_13170001 RAL-787 1677 chrX 13236886 13236899 chrX 13236968 13236983 4 84 0.0 2.5 1.2 1.8 97 chrX 13236886 intron mew - chrX 13236934 intron mew - chrX 13236983 intron mew - chrX_4_13235001 chrX_13235001 RAL-787 1678 chrX 13429475 13429492 chrX 13430623 13430641 jockey 4 1149 0.0 3.0 1.5 1.6 1166 chrX 13429475 intergenic not near genes chrX 13430058 intergenic not near genes chrX 13430641 intergenic not near genes chrX_4_13430001 chrX_13430001 RAL-787 1679 chrX 13442143 13442156 chrX 13442234 13442247 4 90 0.5 1.0 0.8 2.2 104 chrX 13442143 intergenic not near genes chrX 13442195 intergenic not near genes chrX 13442247 intergenic not near genes chrX_4_13440001 chrX_13440001 RAL-787 1680 chrX 13463646 13463662 chrX 13469223 13469239 mdg3 5 5577 2.0 1.0 1.5 2.0 5593 chrX 13463646 intron Neto + chrX 13466442 intron Neto + chrX 13469239 intron Neto + chrX_5_13465001 chrX_13465001 RAL-787 1681 chrX 13875966 13875977 chrX 13876050 13876061 4 84 0.0 0.0 0.0 4.0 95 chrX 13875966 intron mamo - chrX 13876014 intron mamo - chrX 13876061 intron mamo - chrX_4_13875001 chrX_13875001 RAL-787 1682 chrX 13934294 13934319 chrX 13934377 13934402 4 83 1.5 1.0 1.2 1.8 108 chrX 13934294 intron mamo - chrX 13934348 intron mamo - chrX 13934402 intron mamo - chrX_4_13930001 chrX_13930001 RAL-787 1683 chrX 13975883 13975907 chrX 13975960 13975984 4 75 0.5 2.0 1.2 1.8 101 chrX 13975883 intron mamo - chrX 13975934 intron mamo - chrX 13975984 intron mamo - chrX_4_13975001 chrX_13975001 RAL-787 1684 chrX 14011627 14011660 chrX 14012811 14012844 6 1182 9.0 7.5 8.2 0.7 1217 chrX 14011627 intergenic not near genes chrX 14012236 intergenic not near genes chrX 14012844 intergenic not near genes chrX_6_14010001 chrX_14010001 RAL-787 1685 chrX 14312771 14312791 chrX 14312852 14312872 6 81 2.5 1.0 1.8 2.1 101 chrX 14312771 intergenic not near genes chrX 14312822 intergenic not near genes chrX 14312872 intergenic not near genes chrX_6_14310001 chrX_14310001 RAL-787 1686 chrX 14514142 14514161 chrX 14514384 14514418 6 249 2.5 3.0 2.8 1.6 276 chrX 14514142 intergenic not near genes chrX 14514280 intergenic not near genes chrX 14514418 intergenic not near genes chrX_6_14510001 chrX_14510001 RAL-787 1687 chrX 14560275 14560302 chrX 14560359 14560386 7 84 0.5 1.5 1.0 3.5 111 chrX 14560275 intergenic not near genes chrX 14560330 intergenic not near genes chrX 14560386 intergenic not near genes chrX_7_14560001 chrX_14560001 RAL-787 1688 chrX 14589692 14589708 chrX 14589931 14589948 pogo 8 240 2.5 0.5 1.5 3.2 256 chrX 14589692 intron CG9413 - chrX 14589820 intron CG9413 - chrX 14589948 intron CG9413 - chrX_8_14585001 chrX_14585001 RAL-787 1689 chrX 14636459 14636493 chrX 14641900 14641934 I-element 10 5435 1.5 2.0 1.8 3.6 5475 chrX 14636459 intron NetA - chrX 14639196 intron NetA - chrX 14641934 intron NetA - chrX_10_14635001 chrX_14635001 RAL-787 1690 chrX 14649328 14649337 chrX 14649395 14649413 6 73 0.0 3.5 1.8 2.1 85 chrX 14649328 intron NetA - chrX 14649370 intron NetA - chrX 14649413 intron NetA - chrX_6_14645001 chrX_14645001 RAL-787 1691 chrX 14714048 14714064 chrX 14714130 14714146 6 82 1.0 4.0 2.5 1.7 98 chrX 14714048 intron NetB - chrX 14714097 intron NetB - chrX 14714146 intron NetB - chrX_6_14710001 chrX_14710001 RAL-787 1692 chrX 14767960 14767972 chrX 14768040 14768051 4 79 1.5 0.0 0.8 2.2 91 chrX 14767960 intergenic not near genes chrX 14768006 intergenic not near genes chrX 14768051 intergenic not near genes chrX_4_14765001 chrX_14765001 RAL-787 1693 chrX 14778044 14778061 chrX 14782838 14782858 Doc 7 4797 2.0 1.0 1.5 2.8 4814 chrX 14778044 intergenic CG5347 + chrX 14780451 intergenic not near genes chrX 14782858 intergenic Ag5r2 - chrX_7_14780001 chrX_14780001 RAL-787 1694 chrX 14936859 14936883 chrX 14946116 14946140 roo 5 9257 1.5 1.0 1.2 2.3 9281 chrX 14936859 intron pdgy - chrX 14941500 intron pdgy - chrX 14946140 intron pdgy - chrX_5_14940001 chrX_14940001 RAL-787 1695 chrX 14968083 14968101 chrX 14968161 14968180 5 78 1.5 4.0 2.8 1.3 97 chrX 14968083 intron eag + chrX 14968132 intron eag + chrX 14968180 intron eag + chrX_5_14965001 chrX_14965001 RAL-787 1696 chrX 15248263 15248291 chrX 15248339 15248367 4 72 0.5 2.0 1.2 1.8 104 chrX 15248263 intergenic not near genes chrX 15248315 intergenic not near genes chrX 15248367 intergenic not near genes chrX_4_15245001 chrX_15245001 RAL-787 1697 chrX 15358311 15358326 chrX 15358399 15358414 4 88 2.0 0.5 1.2 1.8 103 chrX 15358311 intron acj6 - chrX 15358362 intron acj6 - chrX 15358414 intron acj6 - chrX_4_15355001 chrX_15355001 RAL-787 1698 chrX 15413044 15413080 chrX 15417346 15417382 Juan 10 4300 3.5 3.0 3.2 2.4 4338 chrX 15413044 intron Cngl - chrX 15415213 intron Cngl - chrX 15417382 intron Cngl - chrX_10_15415001 chrX_15415001 RAL-787 1699 chrX 15565650 15565670 chrX 15565736 15565756 4 86 1.5 1.0 1.2 1.8 106 chrX 15565650 intergenic not near genes chrX 15565703 intergenic not near genes chrX 15565756 intergenic not near genes chrX_4_15565001 chrX_15565001 RAL-787 1700 chrX 15642229 15642254 chrX 15642628 15642648 6 398 2.5 4.0 3.2 1.4 419 chrX 15642229 intergenic CR44893 - chrX 15642438 intergenic CR44893 - chrX 15642648 intergenic not near genes chrX_6_15640001 chrX_15640001 RAL-787 1701 chrX 15681396 15681420 chrX 15681478 15681502 7 82 0.5 0.0 0.2 5.8 106 chrX 15681396 intergenic not near genes chrX 15681449 intergenic not near genes chrX 15681502 intergenic not near genes chrX_7_15680001 chrX_15680001 RAL-787 1702 chrX 16176197 16176218 chrX 16176274 16176295 5 75 2.5 3.0 2.8 1.3 98 chrX 16176197 intergenic not near genes chrX 16176246 intergenic not near genes chrX 16176295 intergenic not near genes chrX_5_16175001 chrX_16175001 RAL-787 1703 chrX 16329442 16329449 chrX 16329510 16329528 4 78 0.0 3.5 1.8 1.4 86 chrX 16329442 intron CG9919 - chrX 16329485 intron CG9919 - chrX 16329528 exon CG9919 - chrX_4_16325001 chrX_16325001 RAL-787 1704 chrX 16340672 16340699 chrX 16349829 16349854 roo 4 9156 1.5 1.5 1.5 1.6 9182 chrX 16340672 intergenic Dsp1 + chrX 16345263 intergenic not near genes chrX 16349854 intergenic sl + chrX_4_16345001 chrX_16345001 RAL-787 1705 chrX 16492656 16492674 chrX 16498222 16498251 mdg3 6 5575 5.0 1.0 3.0 1.5 5595 chrX 16492656 intron para - chrX 16495454 intron para - chrX 16498251 intron para - chrX_6_16495001 chrX_16495001 RAL-787 1706 chrX 16906649 16906673 chrX 16906736 16906760 5 86 0.5 3.0 1.8 1.8 111 chrX 16906649 intron CR44754 - chrX 16906704 intron CR44754 - chrX 16906760 intron CR44754 - chrX_5_16905001 chrX_16905001 RAL-787 1707 chrX 17011706 17012000 chrX 17011853 17012083 19 100 2.0 2.5 2.2 5.9 377 chrX 17011706 intron CG45002 - chrX 17011894 intron CG45002 - chrX 17012083 intron CG45002 - chrX_19_17010001 chrX_17010001 RAL-787 1708 chrX 17057937 17057960 chrX 17058178 17058201 pogo 4 239 1.0 0.5 0.8 2.2 264 chrX 17057937 intron CG45002 - chrX 17058069 intron CG45002 - chrX 17058201 intron CG45002 - chrX_4_17055001 chrX_17055001 RAL-787 1709 chrX 17122644 17122674 chrX 17122735 17122764 9 89 2.5 4.0 3.2 2.1 120 chrX 17122644 intron CG5004 + chrX 17122704 intron CG5004 + chrX 17122764 intron CG5004 + chrX_9_17120001 chrX_17120001 RAL-787 1710 chrX 17229958 17229965 chrX 17230061 17230068 4 103 1.5 4.5 3.0 1.0 110 chrX 17229958 intergenic CG10597 - chrX 17230013 intergenic CG10597 - chrX 17230068 intergenic CG10597 - chrX_4_17230001 chrX_17230001 RAL-787 1711 chrX 17234264 17234277 chrX 17234358 17234362 4 92 3.5 0.0 1.8 1.4 98 chrX 17234264 intron f + chrX 17234313 intron f + chrX 17234362 intron f + chrX_4_17230001 chrX_17230001 RAL-787 1712 chrX 17680894 17680922 chrX 17680965 17680999 12 76 2.5 1.5 2.0 4.0 105 chrX 17680894 intron chas - chrX 17680946 intron chas - chrX 17680999 intron chas - chrX_12_17680001 chrX_17680001 RAL-787 1713 chrX 18122820 18122852 chrX 18122895 18122928 5 75 2.0 0.5 1.2 2.3 108 chrX 18122820 5` UTR CR45606 + chrX 18122874 5` UTR CR45606 + chrX 18122928 intergenic CR45606 + chrX_5_18120001 chrX_18120001 RAL-787 1714 chrX 18194067 18194098 chrX 18194602 18194633 BS 6 535 1.5 2.0 1.8 2.1 566 chrX 18194067 intron Frq2 + chrX 18194350 intron Frq2 + chrX 18194633 intron Frq2 + chrX_6_18190001 chrX_18190001 RAL-787 1715 chrX 18411414 18411440 chrX 18411519 18411545 6 104 1.0 0.5 0.8 3.3 131 chrX 18411414 intergenic not near genes chrX 18411480 intergenic not near genes chrX 18411545 intergenic not near genes chrX_6_18410001 chrX_18410001 RAL-787 1716 chrX 18429495 18429517 chrX 18434806 18434828 Transpac 7 5311 0.0 3.0 1.5 2.8 5333 chrX 18429495 intergenic not near genes chrX 18432162 intergenic not near genes chrX 18434828 intergenic not near genes chrX_7_18430001 chrX_18430001 RAL-787 1717 chrX 18645015 18645046 chrX 18645113 18645143 10 97 0.0 3.0 1.5 4.0 128 chrX 18645015 intron Rip11 - chrX 18645079 intron Rip11 - chrX 18645143 intron Rip11 - chrX_10_18645001 chrX_18645001 RAL-787 1718 chrX 19014371 19014393 chrX 19014450 19014472 6 78 1.5 2.5 2.0 2.0 101 chrX 19014371 intron CG43759 + chrX 19014422 intron CG43759 + chrX 19014472 intron CG43759 + chrX_6_19010001 chrX_19010001 RAL-787 1719 chrX 19060411 19060435 chrX 19065195 19065219 Doc 9 4784 1.5 1.0 1.2 4.1 4808 chrX 19060411 intron CG14190 + chrX 19062815 intron CG14190 + chrX 19065219 intron CG14190 + chrX_9_19060001 chrX_19060001 RAL-787 1720 chrX 19098758 19098783 chrX 19098836 19098861 7 78 1.5 0.5 1.0 3.5 103 chrX 19098758 intergenic not near genes chrX 19098810 intergenic not near genes chrX 19098861 intergenic not near genes chrX_7_19095001 chrX_19095001 RAL-787 1721 chrX 19124441 19124450 chrX 19124526 19124538 4 87 1.0 0.5 0.8 2.2 97 chrX 19124441 intergenic CG15882 - chrX 19124490 intergenic CG15882 - chrX 19124538 intergenic CG15882 -,tgy - chrX_4_19120001 chrX_19120001 RAL-787 1722 chrX 19125697 19125720 chrX 19125826 19125832 7 126 1.5 3.0 2.2 2.2 135 chrX 19125697 intron tgy - chrX 19125764 intron tgy - chrX 19125832 intron tgy - chrX_7_19125001 chrX_19125001 RAL-787 1723 chrX 19136557 19136581 chrX 19143476 19143500 412 4 6919 3.0 2.5 2.8 1.1 6943 chrX 19136557 intergenic not near genes chrX 19140028 intergenic not near genes chrX 19143500 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-787 1724 chrX 13057298 13057300 chrX 19242812 19242814 6 6185514 3.5 3.5 3.5 1.3 6185516 chrX 13057298 intron rad + chrX 16150056 intergenic not near genes chrX 19242814 intergenic not near genes chrX_6_16150001 chrX_16150001 RAL-787 1725 chrX 19281010 19281027 chrX 19281139 19281156 4 129 0.0 0.5 0.2 3.3 146 chrX 19281010 intergenic CG8034 - chrX 19281083 intergenic CG8034 - chrX 19281156 intergenic CG8034 - chrX_4_19280001 chrX_19280001 RAL-787 1726 chrX 19356993 19357008 chrX 19358433 19358449 NOF 5 1441 2.5 0.0 1.2 2.3 1456 chrX 19356993 intron kek5 + chrX 19357721 intron kek5 + chrX 19358449 intron kek5 + chrX_5_19355001 chrX_19355001 RAL-787 1727 chrX 19380156 19380188 chrX 19380397 19380429 pogo 6 241 3.5 0.5 2.0 2.0 273 chrX 19380156 intron kek5 + chrX 19380292 intron kek5 + chrX 19380429 intron kek5 + chrX_6_19380001 chrX_19380001 RAL-787 1728 chrX 19472128 19472152 chrX 19472691 19472722 jockey 7 564 3.0 4.5 3.8 1.5 594 chrX 19472128 intergenic kek5 + chrX 19472425 intergenic not near genes chrX 19472722 intergenic not near genes chrX_7_19470001 chrX_19470001 RAL-787 1729 chrX 19576566 19576584 chrX 19576643 19576662 7 78 2.0 2.0 2.0 2.3 96 chrX 19576566 intron Tao - chrX 19576614 intron Tao - chrX 19576662 intron Tao - chrX_7_19575001 chrX_19575001 RAL-787 1730 chrX 19662032 19662048 chrX 19662255 19662271 7 223 3.0 3.0 3.0 1.8 239 chrX 19662032 intron CG14223 - chrX 19662152 intron CG14223 - chrX 19662271 intron CG14223 - chrX_7_19660001 chrX_19660001 RAL-787 1731 chrX 19710075 19710103 chrX 19711857 19711889 S-element 11 1784 1.5 5.0 3.2 2.6 1814 chrX 19710075 intron meso18E - chrX 19710982 intron meso18E - chrX 19711889 intron meso18E - chrX_11_19710001 chrX_19710001 RAL-787 1732 chrX 19791265 19791288 chrX 19791359 19791382 5 93 0.5 0.5 0.5 3.3 117 chrX 19791265 intergenic not near genes chrX 19791324 intergenic not near genes chrX 19791382 intergenic not near genes chrX_5_19790001 chrX_19790001 RAL-787 1733 chrX 19880386 19880394 chrX 19880505 19880513 4 119 2.0 1.0 1.5 1.6 127 chrX 19880386 intron Hers + chrX 19880450 intron Hers + chrX 19880513 intron Hers + chrX_4_19880001 chrX_19880001 RAL-787 1734 chrX 19881455 19881482 chrX 19881536 19881563 7 77 1.5 1.0 1.2 3.2 108 chrX 19881455 intron Hers + chrX 19881509 intron Hers + chrX 19881563 intron Hers + chrX_7_19880001 chrX_19880001 RAL-787 1735 chrX 19884091 19884116 chrX 19884164 19884190 4 72 1.5 2.5 2.0 1.3 99 chrX 19884091 intron Hers + chrX 19884140 intron Hers + chrX 19884190 intron Hers + chrX_4_19880001 chrX_19880001 RAL-787 1736 chrX 19978156 19978167 chrX 19978244 19978255 5 88 7.5 9.0 8.2 0.5 99 chrX 19978156 intergenic not near genes chrX 19978206 intergenic not near genes chrX 19978255 intergenic not near genes chrX_5_19975001 chrX_19975001 RAL-787 1737 chrX 20061138 20061155 chrX 20061245 20061262 6 107 0.0 5.0 2.5 1.7 124 chrX 20061138 intron Dop2R - chrX 20061200 intron Dop2R - chrX 20061262 intron Dop2R - chrX_6_20060001 chrX_20060001 RAL-787 1738 chrX 20105195 20105227 chrX 20105301 20105332 14 105 21.0 28.5 24.8 0.5 137 chrX 20105195 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105332 intergenic not near genes chrX_14_20105001 chrX_20105001 RAL-787 1739 chrX 20259358 20259365 chrX 20446503 20446516 5 187149 12.0 0.5 6.2 0.7 187158 chrX 20259358 exon CG42577 + chrX 20352937 intergenic not near genes chrX 20446516 exon CG42578 + chrX_5_20350001 chrX_20350001 RAL-787 1740 chrX 20312884 20312907 chrX 20312961 20312983 7 77 0.5 1.5 1.0 3.5 99 chrX 20312884 intron CG1504 - chrX 20312934 intron CG1504 - chrX 20312983 intron CG1504 - chrX_7_20310001 chrX_20310001 RAL-787 1741 chrX 20369322 20369334 chrX 20369406 20369417 4 84 2.5 2.0 2.2 1.2 95 chrX 20369322 intergenic not near genes chrX 20369370 intergenic not near genes chrX 20369417 intergenic not near genes chrX_4_20365001 chrX_20365001 RAL-787 1742 chrX 20377327 20377346 chrX 20378788 20378810 hobo 7 1465 3.5 4.0 3.8 1.5 1483 chrX 20377327 intergenic not near genes chrX 20378068 intergenic not near genes chrX 20378810 intergenic not near genes chrX_7_20375001 chrX_20375001 RAL-787 1743 chrX 20528606 20528632 chrX 20528954 20528980 4 347 0.5 3.0 1.8 1.4 374 chrX 20528606 intergenic not near genes chrX 20528793 intergenic not near genes chrX 20528980 intergenic not near genes chrX_4_20525001 chrX_20525001 RAL-787 1744 chrX 20575156 20575176 chrX 20575234 20575254 7 78 3.0 1.5 2.2 2.2 98 chrX 20575156 intergenic CG42580 + chrX 20575205 intergenic not near genes chrX 20575254 intergenic not near genes chrX_7_20575001 chrX_20575001 RAL-787 1745 chrX 20578077 20578111 chrX 20578156 20578190 4 79 2.5 2.0 2.2 1.2 113 chrX 20578077 intergenic not near genes chrX 20578134 intergenic not near genes chrX 20578190 intergenic not near genes chrX_4_20575001 chrX_20575001 RAL-787 1746 chrX 20710410 20710435 chrX 20710487 20710512 5 77 0.0 2.0 1.0 2.5 102 chrX 20710410 intergenic not near genes chrX 20710461 intergenic not near genes chrX 20710512 intergenic not near genes chrX_5_20710001 chrX_20710001 RAL-787 1747 chrX 20836726 20836758 chrX 20844328 20844340 roo 8 7596 0.0 1.5 0.8 4.4 7614 chrX 20836726 intron shakB - chrX 20840533 intron shakB - chrX 20844340 intron shakB - chrX_8_20840001 chrX_20840001 RAL-787 1748 chrX 20940720 20940756 chrX 20942189 20942225 hobo 14 1464 2.0 6.0 4.0 2.8 1505 chrX 20940720 intergenic not near genes chrX 20941472 intergenic not near genes chrX 20942225 intergenic not near genes chrX_14_20940001 chrX_20940001 RAL-787 1749 chrX 20981027 20981057 chrX 20981130 20981160 6 103 1.5 0.5 1.0 3.0 133 chrX 20981027 intergenic not near genes chrX 20981094 intergenic not near genes chrX 20981160 intergenic not near genes chrX_6_20980001 chrX_20980001 RAL-787 1750 chrX 21042555 21042586 chrX 21045340 21045372 9 2786 16.0 22.5 19.2 0.4 2817 chrX 21042555 exon Mgstl + chrX 21043964 exon,3` UTR Mgstl +,CR44431 - chrX 21045372 intron Cbs + chrX_9_21040001 chrX_21040001 RAL-787 1751 chrX 21088042 21088066 chrX 21088174 21088197 6 130 2.0 0.0 1.0 3.0 155 chrX 21088042 intergenic not near genes chrX 21088120 intergenic not near genes chrX 21088197 intergenic not near genes chrX_6_21085001 chrX_21085001 RAL-787 1752 chrX 21089143 21089168 chrX 21089237 21089262 8 93 7.0 1.5 4.2 1.5 119 chrX 21089143 intergenic not near genes chrX 21089202 intergenic not near genes chrX 21089262 intergenic not near genes chrX_8_21085001 chrX_21085001 RAL-787 1753 chrX 21221303 21221335 chrX 21221430 21221463 7 127 2.5 5.0 3.8 1.5 160 chrX 21221303 intron CG32521 - chrX 21221383 intron CG32521 - chrX 21221463 intron CG32521 - chrX_7_21220001 chrX_21220001 RAL-787 1754 chrX 21303203 21303219 chrX 21303290 21303308 4 89 2.0 1.0 1.5 1.6 105 chrX 21303203 intron CG1718 - chrX 21303256 intron CG1718 - chrX 21303308 intron CG1718 - chrX_4_21300001 chrX_21300001 RAL-787 1755 chrX 21419717 21419729 chrX 21419806 21419811 4 86 1.0 5.5 3.2 1.0 94 chrX 21419717 intergenic not near genes chrX 21419764 intergenic not near genes chrX 21419811 intergenic not near genes chrX_4_21415001 chrX_21415001 RAL-787 1756 chrX 21455217 21455243 chrX 21455396 21455430 4 181 0.0 0.0 0.0 4.0 213 chrX 21455217 intron CG42343 - chrX 21455324 intron CG42343 - chrX 21455430 intron CG42343 - chrX_4_21455001 chrX_21455001 RAL-787 1757 chrX 21458696 21458733 chrX 21464131 21464169 Ivk 5 5436 0.0 0.5 0.2 4.2 5473 chrX 21458696 intergenic not near genes chrX 21461432 intergenic not near genes chrX 21464169 intergenic not near genes chrX_5_21460001 chrX_21460001 RAL-787 1758 chrX 21565416 21565434 chrX 21565493 21565512 4 78 2.5 1.5 2.0 1.3 96 chrX 21565416 intergenic not near genes chrX 21565464 intergenic not near genes chrX 21565512 intergenic not near genes chrX_4_21565001 chrX_21565001 RAL-787 1759 chrX 21668263 21668281 chrX 21668348 21668366 5 84 12.5 14.5 13.5 0.3 103 chrX 21668263 intergenic not near genes chrX 21668314 intergenic not near genes chrX 21668366 intergenic not near genes chrX_5_21665001 chrX_21665001 RAL-787 1760 chrX 22660571 22660590 chrX 22660654 22660674 5 83 3.0 0.5 1.8 1.8 103 chrX 22660571 intron CR44997 + chrX 22660622 intron CR44997 + chrX 22660674 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-787 1761 chrX 22661986 22662006 chrX 22662084 22662105 5 98 0.0 1.5 0.8 2.8 119 chrX 22661986 intron CR44997 + chrX 22662046 intron CR44997 + chrX 22662105 intron CR44997 + chrX_5_22660001 chrX_22660001 RAL-787 1762 chrX 22697506 22697516 chrX 22701803 22701813 Juan 5 4297 4.0 2.0 3.0 1.2 4307 chrX 22697506 intron CR44997 + chrX 22699660 intron CR44997 + chrX 22701813 intron CR44997 + chrX_5_22695001 chrX_22695001 RAL-787 1763 chrX 22771509 22771532 chrX 22774800 22774823 297 5 3291 2.5 5.5 4.0 1.0 3314 chrX 22771509 intron CR44997 + chrX 22773166 intron CR44997 + chrX 22774823 intron CR44997 + chrX_5_22770001 chrX_22770001 RAL-787 1764 chrX 22784078 22784106 chrX 22784161 22784189 6 83 2.0 1.5 1.8 2.1 111 chrX 22784078 intron CR44997 + chrX 22784134 intron CR44997 + chrX 22784189 intron CR44997 + chrX_6_22780001 chrX_22780001 RAL-787 1765 chrX 22987103 22987133 chrX 22989761 22989770 Burdock 7 2655 1.0 1.0 1.0 3.5 2667 chrX 22987103 intron,intron stnA -,stnB - chrX 22988436 intron,intron stnA -,stnB - chrX 22989770 intron,intron stnA -,stnB - chrX_7_22985001 chrX_22985001 RAL-787 1766 chrX 22992395 22992415 chrX 22992525 22992546 5 131 2.5 2.0 2.2 1.6 151 chrX 22992395 intron,intron stnA -,stnB - chrX 22992470 intron,intron stnA -,stnB - chrX 22992546 intron,intron stnA -,stnB - chrX_5_22990001 chrX_22990001 RAL-787 1767 chrX 22996314 22996318 chrX 23003546 23003550 roo 4 7232 5.0 2.5 3.8 0.8 7236 chrX 22996314 intron,intron stnA -,stnB - chrX 22999932 intron,intron stnA -,stnB - chrX 23003550 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-787 1768 chrX 23036404 23036409 chrX 23037796 23037808 pogo 4 1398 2.5 0.0 1.2 1.8 1404 chrX 23036404 intron CG12061 + chrX 23037106 intron CG12061 + chrX 23037808 intron CG12061 + chrX_4_23035001 chrX_23035001 RAL-787 1769 chrY 975791 975814 chrY 975871 975871 6 118 131.0 137.0 134.0 0.0 80 chrY 975791 intergenic not near genes chrY 975831 intergenic not near genes chrY 975871 intergenic not near genes chrY_6_975001 chrY_975001 RAL-787