SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 8112 8138 chr2L 9255 9281 10 1144 18.0 28.0 23.0 0.4 1169 chr2L 8112 exon CG11023 + chr2L 8696 3` UTR CG11023 + chr2L 9281 3` UTR CG11023 + chr2L_10_5001 chr2L_5001 RAL-783 2 chr2L 63049 63067 chr2L 63134 63152 5 85 2.5 3.5 3.0 1.2 103 chr2L 63049 intron Cda5 - chr2L 63100 intron Cda5 - chr2L 63152 intron Cda5 - chr2L_5_60001 chr2L_60001 RAL-783 3 chr2L 73789 73810 chr2L 73898 73919 9 107 2.0 3.5 2.8 2.4 130 chr2L 73789 3` UTR,intron CR44987 -,galectin + chr2L 73854 intron galectin + chr2L 73919 intron galectin + chr2L_9_70001 chr2L_70001 RAL-783 4 chr2L 92570 92597 chr2L 92803 92830 8 233 2.5 4.5 3.5 1.8 260 chr2L 92570 intergenic not near genes chr2L 92700 intergenic not near genes chr2L 92830 intergenic not near genes chr2L_8_90001 chr2L_90001 RAL-783 5 chr2L 140747 140782 chr2L 141094 141128 13 346 3.5 2.0 2.8 3.4 381 chr2L 140747 intron,exon,5` UTR CG11455 +,CG31975 -,CG31976 - chr2L 140938 intron,5` UTR,5` UTR CG11455 +,CG31975 -,CG31976 - chr2L 141128 intron,3` UTR CG11455 +,CG31974 - chr2L_13_140001 chr2L_140001 RAL-783 6 chr2L 142489 142527 chr2L 142582 142619 21 93 1.5 2.5 2.0 7.0 130 chr2L 142489 intron,5` UTR CG11455 +,CG31974 - chr2L 142554 intron,5` UTR CG11455 +,CG31974 - chr2L 142619 intron,5` UTR CG11455 +,CG31974 - chr2L_21_140001 chr2L_140001 RAL-783 7 chr2L 165210 165237 chr2L 165474 165502 5 265 1.0 5.0 3.0 1.2 292 chr2L 165210 intron spen + chr2L 165356 intron spen + chr2L 165502 intron spen + chr2L_5_165001 chr2L_165001 RAL-783 8 chr2L 179456 179486 chr2L 179539 179569 11 83 2.0 2.0 2.0 3.7 113 chr2L 179456 intron spen + chr2L 179512 intron spen + chr2L 179569 intron spen + chr2L_11_175001 chr2L_175001 RAL-783 9 chr2L 314285 314314 chr2L 314371 314400 8 84 2.0 0.5 1.2 3.6 115 chr2L 314285 intron Plc21C + chr2L 314342 intron Plc21C + chr2L 314400 intron Plc21C + chr2L_8_310001 chr2L_310001 RAL-783 10 chr2L 316714 316741 chr2L 316790 316802 5 71 2.5 2.5 2.5 1.4 88 chr2L 316714 intron Plc21C + chr2L 316758 intron Plc21C + chr2L 316802 intron Plc21C + chr2L_5_315001 chr2L_315001 RAL-783 11 chr2L 347889 347914 chr2L 355389 355414 blood 6 7500 1.0 1.5 1.2 2.7 7525 chr2L 347889 3` UTR Plc21C + chr2L 351652 intron Plc21C + chr2L 355414 3` UTR Plc21C + chr2L_6_350001 chr2L_350001 RAL-783 12 chr2L 575419 575444 chr2L 575515 575540 7 96 1.5 0.0 0.8 3.9 121 chr2L 575419 3` UTR cold + chr2L 575480 3` UTR cold + chr2L 575540 3` UTR cold + chr2L_7_575001 chr2L_575001 RAL-783 13 chr2L 585544 585569 chr2L 585613 585647 10 75 4.0 3.0 3.5 2.2 103 chr2L 585544 intron Gsc - chr2L 585596 intron Gsc - chr2L 585647 intron Gsc - chr2L_10_585001 chr2L_585001 RAL-783 14 chr2L 612638 612648 chr2L 612731 612750 4 99 4.0 2.5 3.2 1.0 112 chr2L 612638 intergenic not near genes chr2L 612694 intergenic not near genes chr2L 612750 intergenic not near genes chr2L_4_610001 chr2L_610001 RAL-783 15 chr2L 658559 658589 chr2L 658638 658666 5 78 1.0 2.5 1.8 1.8 107 chr2L 658559 intron ds - chr2L 658612 intron ds - chr2L 658666 intron ds - chr2L_5_655001 chr2L_655001 RAL-783 16 chr2L 686925 686952 chr2L 695958 695992 roo 12 9038 1.5 2.5 2.0 4.0 9067 chr2L 686925 intron ds - chr2L 691458 intron ds - chr2L 695992 intron ds - chr2L_12_690001 chr2L_690001 RAL-783 17 chr2L 770467 770485 chr2L 772244 772266 Bari1 4 1780 3.5 5.0 4.2 0.8 1799 chr2L 770467 intergenic not near genes chr2L 771366 intergenic not near genes chr2L 772266 intergenic CR44614 + chr2L_4_770001 chr2L_770001 RAL-783 18 chr2L 795259 795286 chr2L 795369 795396 8 108 4.0 0.5 2.2 2.5 137 chr2L 795259 intergenic not near genes chr2L 795328 intergenic not near genes chr2L 795396 intergenic not near genes chr2L_8_795001 chr2L_795001 RAL-783 19 chr2L 809565 809599 chr2L 809647 809681 9 82 4.0 1.5 2.8 2.4 116 chr2L 809565 intergenic not near genes chr2L 809623 intergenic not near genes chr2L 809681 intergenic not near genes chr2L_9_805001 chr2L_805001 RAL-783 20 chr2L 931635 931655 chr2L 931713 931732 5 78 4.0 4.0 4.0 1.0 97 chr2L 931635 intron CG4341 + chr2L 931684 intron CG4341 + chr2L 931732 intron CG4341 + chr2L_5_930001 chr2L_930001 RAL-783 21 chr2L 955988 955994 chr2L 956070 956090 6 93 0.0 3.0 1.5 2.4 102 chr2L 955988 intron CG4341 + chr2L 956039 intron CG4341 + chr2L 956090 intron CG4341 + chr2L_6_955001 chr2L_955001 RAL-783 22 chr2L 976883 976912 chr2L 984518 984548 roo 7 7636 2.0 2.0 2.0 2.3 7665 chr2L 976883 intergenic not near genes chr2L 980716 intergenic not near genes chr2L 984548 intergenic not near genes chr2L_7_980001 chr2L_980001 RAL-783 23 chr2L 1035563 1035592 chr2L 1035640 1035669 10 76 1.0 1.5 1.2 4.5 106 chr2L 1035563 intron IA-2 - chr2L 1035616 intron IA-2 - chr2L 1035669 intron IA-2 - chr2L_10_1035001 chr2L_1035001 RAL-783 24 chr2L 1220131 1220160 chr2L 1227597 1227625 blood 6 7466 2.0 3.5 2.8 1.6 7494 chr2L 1220131 intron CG42329 + chr2L 1223878 intron CG42329 + chr2L 1227625 intron CG42329 + chr2L_6_1220001 chr2L_1220001 RAL-783 25 chr2L 1261234 1261259 chr2L 1261315 1261325 6 78 1.0 2.0 1.5 2.4 91 chr2L 1261234 intron robo3 + chr2L 1261280 intron robo3 + chr2L 1261325 intron robo3 + chr2L_6_1260001 chr2L_1260001 RAL-783 26 chr2L 1312871 1312901 chr2L 1312958 1312988 5 86 1.0 1.0 1.0 2.5 117 chr2L 1312871 intergenic not near genes chr2L 1312930 intergenic not near genes chr2L 1312988 intergenic not near genes chr2L_5_1310001 chr2L_1310001 RAL-783 27 chr2L 1541623 1541637 chr2L 1541728 1541746 5 108 5.5 3.5 4.5 0.9 123 chr2L 1541623 intergenic not near genes chr2L 1541684 intergenic not near genes chr2L 1541746 intergenic not near genes chr2L_5_1540001 chr2L_1540001 RAL-783 28 chr2L 1570691 1570719 chr2L 1573561 1573591 F-element 8 2872 0.5 3.0 1.8 2.9 2900 chr2L 1570691 intron haf + chr2L 1572141 intron haf + chr2L 1573591 intron haf + chr2L_8_1570001 chr2L_1570001 RAL-783 29 chr2L 1591862 1591880 chr2L 1591946 1591964 7 84 2.0 1.0 1.5 2.8 102 chr2L 1591862 intron haf + chr2L 1591913 intron haf + chr2L 1591964 intron haf + chr2L_7_1590001 chr2L_1590001 RAL-783 30 chr2L 1679001 1679008 chr2L 1686466 1686472 blood 4 7465 0.0 5.5 2.8 1.1 7471 chr2L 1679001 intron chinmo + chr2L 1682736 intron chinmo + chr2L 1686472 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-783 31 chr2L 1711361 1711378 chr2L 1711685 1711701 mdg3 4 322 3.5 3.5 3.5 0.9 340 chr2L 1711361 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711531 3` UTR frtz - chr2L 1711701 3` UTR frtz - chr2L_4_1710001 chr2L_1710001 RAL-783 32 chr2L 1717497 1717512 chr2L 1717589 1717605 5 93 0.0 2.5 1.2 2.3 108 chr2L 1717497 intron Rim2 - chr2L 1717551 intron Rim2 - chr2L 1717605 exon Rim2 - chr2L_5_1715001 chr2L_1715001 RAL-783 33 chr2L 1721824 1721847 chr2L 1721908 1721909 4 78 2.0 1.0 1.5 1.6 85 chr2L 1721824 intron Rim2 - chr2L 1721866 intron Rim2 - chr2L 1721909 intron Rim2 - chr2L_4_1720001 chr2L_1720001 RAL-783 34 chr2L 1744808 1744833 chr2L 1744886 1744902 8 74 2.5 2.0 2.2 2.5 94 chr2L 1744808 intron CG17646 + chr2L 1744855 intron CG17646 + chr2L 1744902 intron CG17646 + chr2L_8_1740001 chr2L_1740001 RAL-783 35 chr2L 1781122 1781134 chr2L 1781274 1781286 5 151 14.5 14.0 14.2 0.3 164 chr2L 1781122 intergenic not near genes chr2L 1781204 intergenic not near genes chr2L 1781286 intergenic not near genes chr2L_5_1780001 chr2L_1780001 RAL-783 36 chr2L 1836790 1836797 chr2L 1836898 1836905 4 108 4.0 0.0 2.0 1.3 115 chr2L 1836790 intron wry + chr2L 1836848 intron wry + chr2L 1836905 intron wry + chr2L_4_1835001 chr2L_1835001 RAL-783 37 chr2L 1868240 1868257 chr2L 1868437 1868458 6 202 0.5 4.0 2.2 1.9 218 chr2L 1868240 intron CG31663 - chr2L 1868349 intron CG31663 - chr2L 1868458 intron CG31663 - chr2L_6_1865001 chr2L_1865001 RAL-783 38 chr2L 1993195 1993230 chr2L 1993281 1993316 12 85 2.0 2.0 2.0 4.0 121 chr2L 1993195 intergenic not near genes chr2L 1993256 intergenic not near genes chr2L 1993316 intergenic not near genes chr2L_12_1990001 chr2L_1990001 RAL-783 39 chr2L 2068811 2068839 chr2L 2068992 2069014 5 181 2.0 0.5 1.2 2.3 203 chr2L 2068811 intron dpr3 - chr2L 2068912 intron dpr3 - chr2L 2069014 intron dpr3 - chr2L_5_2065001 chr2L_2065001 RAL-783 40 chr2L 2100382 2100403 chr2L 2109533 2109542 roo 8 9149 7.5 1.5 4.5 1.5 9160 chr2L 2100382 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109542 intron dpr3 - chr2L_8_2100001 chr2L_2100001 RAL-783 41 chr2L 2260802 2260832 chr2L 2260888 2260918 7 86 1.5 4.0 2.8 1.8 116 chr2L 2260802 intergenic not near genes chr2L 2260860 intergenic not near genes chr2L 2260918 intergenic not near genes chr2L_7_2260001 chr2L_2260001 RAL-783 42 chr2L 2364093 2364103 chr2L 2364169 2364178 5 76 1.5 12.0 6.8 0.6 85 chr2L 2364093 intron Rab5 - chr2L 2364136 intron Rab5 - chr2L 2364178 intron Rab5 - chr2L_5_2360001 chr2L_2360001 RAL-783 43 chr2L 2372365 2372403 chr2L 2372451 2372483 6 85 0.0 1.5 0.8 3.3 118 chr2L 2372365 intergenic CG3609 - chr2L 2372424 intergenic CG3609 - chr2L 2372483 3` UTR CG3609 - chr2L_6_2370001 chr2L_2370001 RAL-783 44 chr2L 2398927 2398955 chr2L 2399005 2399033 7 77 0.0 5.5 2.8 1.8 106 chr2L 2398927 intron VGlut + chr2L 2398980 intron VGlut + chr2L 2399033 intron VGlut + chr2L_7_2395001 chr2L_2395001 RAL-783 45 chr2L 2412180 2412194 chr2L 2412283 2412303 7 105 5.5 3.5 4.5 1.3 123 chr2L 2412180 intron CG18641 - chr2L 2412242 intron CG18641 - chr2L 2412303 intron CG18641 - chr2L_7_2410001 chr2L_2410001 RAL-783 46 chr2L 2412196 2412207 chr2L 2412282 2412316 7 101 2.5 3.5 3.0 1.8 120 chr2L 2412196 intron CG18641 - chr2L 2412256 intron CG18641 - chr2L 2412316 intron CG18641 - chr2L_7_2410001 chr2L_2410001 RAL-783 47 chr2L 2626324 2626351 chr2L 2626833 2626857 4 508 5.0 5.0 5.0 0.7 533 chr2L 2626324 3` UTR CR45705 - chr2L 2626590 3` UTR CR45705 - chr2L 2626857 3` UTR CR45705 - chr2L_4_2625001 chr2L_2625001 RAL-783 48 chr2L 2667629 2667641 chr2L 2667708 2667720 6 78 5.0 3.5 4.2 1.2 91 chr2L 2667629 intergenic not near genes chr2L 2667674 intergenic not near genes chr2L 2667720 intergenic not near genes chr2L_6_2665001 chr2L_2665001 RAL-783 49 chr2L 2667643 2667658 chr2L 2667704 2667737 7 74 2.5 3.5 3.0 1.8 94 chr2L 2667643 intergenic not near genes chr2L 2667690 intergenic not near genes chr2L 2667737 intergenic not near genes chr2L_7_2665001 chr2L_2665001 RAL-783 50 chr2L 2927953 2927969 chr2L 2928040 2928053 5 86 0.5 3.5 2.0 1.7 100 chr2L 2927953 intron lilli + chr2L 2928003 intron lilli + chr2L 2928053 intron lilli + chr2L_5_2925001 chr2L_2925001 RAL-783 51 chr2L 2937424 2937450 chr2L 2937501 2937527 8 77 1.5 2.0 1.8 2.9 103 chr2L 2937424 intron lilli + chr2L 2937476 intron lilli + chr2L 2937527 intron lilli + chr2L_8_2935001 chr2L_2935001 RAL-783 52 chr2L 3049238 3049262 chr2L 3049324 3049348 5 85 1.5 2.0 1.8 1.8 110 chr2L 3049238 intron v(2)k05816 + chr2L 3049293 intron v(2)k05816 + chr2L 3049348 intron v(2)k05816 + chr2L_5_3045001 chr2L_3045001 RAL-783 53 chr2L 3073032 3073063 chr2L 3078235 3078266 copia 14 5201 2.5 4.0 3.2 3.3 5234 chr2L 3073032 intron toc - chr2L 3075649 intron toc - chr2L 3078266 intron toc - chr2L_14_3075001 chr2L_3075001 RAL-783 54 chr2L 3108875 3108897 chr2L 3108951 3108973 5 75 1.0 0.0 0.5 3.3 98 chr2L 3108875 intron toc - chr2L 3108924 intron toc - chr2L 3108973 intron toc - chr2L_5_3105001 chr2L_3105001 RAL-783 55 chr2L 3192219 3192232 chr2L 3192326 3192343 4 110 2.0 3.0 2.5 1.1 124 chr2L 3192219 intron CG34393 - chr2L 3192281 intron CG34393 - chr2L 3192343 intron CG34393 - chr2L_4_3190001 chr2L_3190001 RAL-783 56 chr2L 3242018 3242036 chr2L 3242111 3242137 5 99 2.0 1.0 1.5 2.0 119 chr2L 3242018 intergenic not near genes chr2L 3242078 intergenic not near genes chr2L 3242137 intergenic not near genes chr2L_5_3240001 chr2L_3240001 RAL-783 57 chr2L 3251504 3251520 chr2L 3259061 3259085 springer 5 7563 3.0 0.5 1.8 1.8 7581 chr2L 3251504 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259085 intergenic not near genes chr2L_5_3255001 chr2L_3255001 RAL-783 58 chr2L 3323257 3323283 chr2L 3323363 3323365 11 104 2.0 2.5 2.2 3.4 108 chr2L 3323257 intergenic CG8837 + chr2L 3323311 intergenic CG8837 + chr2L 3323365 intergenic CG8837 + chr2L_11_3320001 chr2L_3320001 RAL-783 59 chr2L 3367026 3367041 chr2L 3367163 3367191 9 148 0.5 3.5 2.0 3.0 165 chr2L 3367026 intron CG34394 - chr2L 3367108 intron CG34394 - chr2L 3367191 intron CG34394 - chr2L_9_3365001 chr2L_3365001 RAL-783 60 chr2L 3393282 3393312 chr2L 3393380 3393409 8 98 5.5 3.0 4.2 1.5 127 chr2L 3393282 intergenic not near genes chr2L 3393346 intergenic not near genes chr2L 3393409 intergenic not near genes chr2L_8_3390001 chr2L_3390001 RAL-783 61 chr2L 3497840 3497860 chr2L 3497917 3497922 5 74 3.5 0.5 2.0 1.7 82 chr2L 3497840 intron tim - chr2L 3497881 intron tim - chr2L 3497922 intron tim - chr2L_5_3495001 chr2L_3495001 RAL-783 62 chr2L 3508357 3508376 chr2L 3508435 3508454 4 78 2.0 3.5 2.8 1.1 97 chr2L 3508357 intergenic tim -,CR45299 + chr2L 3508406 intergenic CR45299 +,tim - chr2L 3508454 intergenic CR45299 +,tim - chr2L_4_3505001 chr2L_3505001 RAL-783 63 chr2L 3536110 3536122 chr2L 3536198 3536210 4 88 2.5 0.5 1.5 1.6 100 chr2L 3536110 intergenic not near genes chr2L 3536160 intergenic not near genes chr2L 3536210 intergenic not near genes chr2L_4_3535001 chr2L_3535001 RAL-783 64 chr2L 3549659 3549668 chr2L 3549761 3549766 6 100 1.5 3.0 2.2 1.9 107 chr2L 3549659 intergenic not near genes chr2L 3549712 intergenic not near genes chr2L 3549766 intergenic not near genes chr2L_6_3545001 chr2L_3545001 RAL-783 65 chr2L 3557017 3557046 chr2L 3557099 3557127 9 80 5.5 2.5 4.0 1.8 110 chr2L 3557017 intergenic not near genes chr2L 3557072 intergenic not near genes chr2L 3557127 intergenic not near genes chr2L_9_3555001 chr2L_3555001 RAL-783 66 chr2L 3649788 3649803 chr2L 3654990 3655005 copia 4 5200 0.5 3.0 1.8 1.4 5217 chr2L 3649788 intron for - chr2L 3652396 intron for - chr2L 3655005 intron for - chr2L_4_3650001 chr2L_3650001 RAL-783 67 chr2L 3663314 3663340 chr2L 3663393 3663419 8 78 2.0 4.5 3.2 1.9 105 chr2L 3663314 intron CG34340 + chr2L 3663366 intron CG34340 + chr2L 3663419 intron CG34340 + chr2L_8_3660001 chr2L_3660001 RAL-783 68 chr2L 3688634 3688663 chr2L 3689547 3689575 6 912 16.5 24.0 20.2 0.3 941 chr2L 3688634 intron CG34340 + chr2L 3689104 intron CG34340 + chr2L 3689575 intron CG34340 + chr2L_6_3685001 chr2L_3685001 RAL-783 69 chr2L 3702905 3702925 chr2L 3702988 3703011 4 85 1.0 2.0 1.5 1.6 106 chr2L 3702905 5` UTR CR44311 + chr2L 3702958 intergenic CR44311 + chr2L 3703011 intergenic CR44311 + chr2L_4_3700001 chr2L_3700001 RAL-783 70 chr2L 3891894 3891922 chr2L 3891978 3892007 5 85 3.5 1.5 2.5 1.4 113 chr2L 3891894 intron capu - chr2L 3891950 intron capu - chr2L 3892007 intron capu - chr2L_5_3890001 chr2L_3890001 RAL-783 71 chr2L 3943792 3943803 chr2L 3943883 3943893 5 91 2.0 2.0 2.0 1.7 101 chr2L 3943792 intron fred - chr2L 3943842 intron fred - chr2L 3943893 intron fred - chr2L_5_3940001 chr2L_3940001 RAL-783 72 chr2L 3950083 3950103 chr2L 3950159 3950179 5 76 3.0 2.0 2.5 1.4 96 chr2L 3950083 intron fred - chr2L 3950131 intron fred - chr2L 3950179 intron fred - chr2L_5_3950001 chr2L_3950001 RAL-783 73 chr2L 4066046 4066063 chr2L 4068871 4068888 Juan 8 2824 2.5 2.0 2.2 2.5 2842 chr2L 4066046 intron ed + chr2L 4067467 intron ed + chr2L 4068888 intron ed + chr2L_8_4065001 chr2L_4065001 RAL-783 74 chr2L 4163463 4163496 chr2L 4163621 4163654 11 158 1.0 2.5 1.8 3.9 191 chr2L 4163463 intergenic not near genes chr2L 4163558 intergenic not near genes chr2L 4163654 intergenic not near genes chr2L_11_4160001 chr2L_4160001 RAL-783 75 chr2L 4166375 4166409 chr2L 4166458 4166492 6 83 1.5 2.0 1.8 2.1 117 chr2L 4166375 intergenic Or24a - chr2L 4166434 intergenic Or24a - chr2L 4166492 intergenic Or24a - chr2L_6_4165001 chr2L_4165001 RAL-783 76 chr2L 4275079 4275097 chr2L 4275163 4275180 6 83 0.5 3.0 1.8 2.1 101 chr2L 4275079 intergenic not near genes chr2L 4275130 intergenic not near genes chr2L 4275180 intergenic not near genes chr2L_6_4275001 chr2L_4275001 RAL-783 77 chr2L 4275099 4275102 chr2L 4275162 4275186 4 77 0.0 3.0 1.5 1.6 87 chr2L 4275099 intergenic not near genes chr2L 4275142 intergenic not near genes chr2L 4275186 intergenic not near genes chr2L_4_4275001 chr2L_4275001 RAL-783 78 chr2L 4313301 4313319 chr2L 4313390 4313408 14 88 0.0 2.5 1.2 6.4 107 chr2L 4313301 intron tutl + chr2L 4313354 intron tutl + chr2L 4313408 intron tutl + chr2L_14_4310001 chr2L_4310001 RAL-783 79 chr2L 4317882 4317910 chr2L 4317959 4317988 11 77 4.5 3.0 3.8 2.3 106 chr2L 4317882 intron tutl + chr2L 4317935 intron tutl + chr2L 4317988 intron tutl + chr2L_11_4315001 chr2L_4315001 RAL-783 80 chr2L 4434531 4434550 chr2L 4434639 4434666 6 112 1.5 1.0 1.2 2.7 135 chr2L 4434531 intron,3` UTR,exon CG15431 -,CG34177 +,CG34178 + chr2L 4434598 intron,intron,intron CG15431 -,CG34177 +,CG34178 + chr2L 4434666 intron,3` UTR,exon CG15431 -,CG34177 +,CG34178 + chr2L_6_4430001 chr2L_4430001 RAL-783 81 chr2L 4601708 4601733 chr2L 4609149 4609174 mdg1 10 7438 3.5 6.0 4.8 1.7 7466 chr2L 4601708 intron dp - chr2L 4605441 intron dp - chr2L 4609174 intron dp - chr2L_10_4605001 chr2L_4605001 RAL-783 82 chr2L 4681288 4681321 chr2L 4681551 4681585 11 264 0.0 1.5 0.8 6.1 297 chr2L 4681288 intergenic not near genes chr2L 4681436 intergenic not near genes chr2L 4681585 intergenic not near genes chr2L_11_4680001 chr2L_4680001 RAL-783 83 chr2L 4695025 4695047 chr2L 4695116 4695138 4 91 3.0 2.5 2.8 1.1 113 chr2L 4695025 intron CG34351 + chr2L 4695082 intron CG34351 + chr2L 4695138 intron CG34351 + chr2L_4_4695001 chr2L_4695001 RAL-783 84 chr2L 4710351 4710372 chr2L 4710428 4710455 8 82 1.5 1.5 1.5 3.2 104 chr2L 4710351 intron CG34351 + chr2L 4710403 intron CG34351 + chr2L 4710455 intron CG34351 + chr2L_8_4710001 chr2L_4710001 RAL-783 85 chr2L 4819501 4819517 chr2L 4819623 4819640 4 122 2.0 5.5 3.8 0.8 139 chr2L 4819501 intergenic not near genes chr2L 4819570 intergenic not near genes chr2L 4819640 intergenic not near genes chr2L_4_4815001 chr2L_4815001 RAL-783 86 chr2L 4918167 4918197 chr2L 4923240 4923270 jockey 6 5073 3.5 0.5 2.0 2.0 5103 chr2L 4918167 intron hoe1 - chr2L 4920718 intron hoe1 - chr2L 4923270 intron hoe1 - chr2L_6_4920001 chr2L_4920001 RAL-783 87 chr2L 4924416 4924427 chr2L 4924502 4924514 5 86 6.5 4.0 5.2 0.8 98 chr2L 4924416 intron hoe1 - chr2L 4924465 intron hoe1 - chr2L 4924514 intron hoe1 - chr2L_5_4920001 chr2L_4920001 RAL-783 88 chr2L 5040688 5040704 chr2L 5040784 5040800 4 96 3.5 1.5 2.5 1.1 112 chr2L 5040688 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040744 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040800 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_4_5040001 chr2L_5040001 RAL-783 89 chr2L 5092422 5092435 chr2L 5092509 5092522 7 87 1.5 2.0 1.8 2.5 100 chr2L 5092422 intron pgant5 - chr2L 5092472 intron pgant5 - chr2L 5092522 intron pgant5 - chr2L_7_5090001 chr2L_5090001 RAL-783 90 chr2L 5120977 5121006 chr2L 5121071 5121100 9 94 1.0 4.5 2.8 2.4 123 chr2L 5120977 intron Msp300 + chr2L 5121038 intron Msp300 + chr2L 5121100 intron Msp300 + chr2L_9_5120001 chr2L_5120001 RAL-783 91 chr2L 5296220 5296248 chr2L 5296299 5296326 12 79 2.5 4.0 3.2 2.9 106 chr2L 5296220 intron vri + chr2L 5296273 intron vri + chr2L 5296326 intron vri + chr2L_12_5295001 chr2L_5295001 RAL-783 92 chr2L 5342771 5342784 chr2L 5345151 5345164 Doc 4 2380 6.0 1.0 3.5 0.9 2393 chr2L 5342771 intergenic not near genes chr2L 5343968 intergenic not near genes chr2L 5345164 intergenic not near genes chr2L_4_5340001 chr2L_5340001 RAL-783 93 chr2L 5500042 5500073 chr2L 5500128 5500159 6 86 1.0 2.0 1.5 2.4 117 chr2L 5500042 intergenic not near genes chr2L 5500100 intergenic not near genes chr2L 5500159 intergenic not near genes chr2L_6_5500001 chr2L_5500001 RAL-783 94 chr2L 5508528 5508558 chr2L 5508604 5508634 9 76 0.5 2.0 1.2 4.1 106 chr2L 5508528 intergenic not near genes chr2L 5508581 intergenic not near genes chr2L 5508634 intergenic not near genes chr2L_9_5505001 chr2L_5505001 RAL-783 95 chr2L 5813668 5813695 chr2L 5813773 5813800 9 105 2.5 4.0 3.2 2.1 132 chr2L 5813668 intergenic not near genes chr2L 5813734 intergenic not near genes chr2L 5813800 intergenic not near genes chr2L_9_5810001 chr2L_5810001 RAL-783 96 chr2L 5827710 5827740 chr2L 5836718 5836748 roo 13 9008 3.5 3.0 3.2 3.1 9038 chr2L 5827710 intron TrissinR + chr2L 5832229 intron TrissinR + chr2L 5836748 intron TrissinR + chr2L_13_5830001 chr2L_5830001 RAL-783 97 chr2L 5887251 5887274 chr2L 5887434 5887457 4 183 16.0 10.0 13.0 0.3 206 chr2L 5887251 3` UTR CR44577 - chr2L 5887354 3` UTR CR44577 - chr2L 5887457 3` UTR CR44577 - chr2L_4_5885001 chr2L_5885001 RAL-783 98 chr2L 5897592 5897628 chr2L 5897675 5897711 12 81 3.5 1.0 2.2 3.8 119 chr2L 5897592 intergenic not near genes chr2L 5897652 intergenic not near genes chr2L 5897711 intergenic not near genes chr2L_12_5895001 chr2L_5895001 RAL-783 99 chr2L 5942027 5942051 chr2L 5942119 5942143 7 92 2.5 0.0 1.2 3.2 116 chr2L 5942027 5` UTR CR45289 + chr2L 5942085 5` UTR CR45289 + chr2L 5942143 5` UTR CR45289 + chr2L_7_5940001 chr2L_5940001 RAL-783 100 chr2L 5993330 5993356 chr2L 5993421 5993447 9 91 4.5 4.0 4.2 1.7 117 chr2L 5993330 exon lid - chr2L 5993388 intron lid - chr2L 5993447 intron lid - chr2L_9_5990001 chr2L_5990001 RAL-783 101 chr2L 6103222 6103250 chr2L 6103296 6103327 7 76 2.0 2.5 2.2 2.2 105 chr2L 6103222 intron stai + chr2L 6103274 intron stai + chr2L 6103327 intron stai + chr2L_7_6100001 chr2L_6100001 RAL-783 102 chr2L 6130771 6130790 chr2L 6130856 6130875 4 85 2.0 0.5 1.2 1.8 104 chr2L 6130771 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130823 intergenic CG42730 -,tectonic -,CG9222 + chr2L 6130875 intergenic CG9222 +,CG42730 -,tectonic - chr2L_4_6130001 chr2L_6130001 RAL-783 103 chr2L 6363169 6363179 chr2L 6366070 6366101 Burdock 4 2916 1.0 2.0 1.5 1.6 2932 chr2L 6363169 intergenic not near genes chr2L 6364635 intergenic not near genes chr2L 6366101 intergenic not near genes chr2L_4_6360001 chr2L_6360001 RAL-783 104 chr2L 6426856 6426885 chr2L 6445116 6445144 roo 6 18260 3.0 3.0 3.0 1.5 18288 chr2L 6426856 3` UTR CG9527 - chr2L 6436000 intron CG9527 - chr2L 6445144 exon CG9527 - chr2L_6_6435001 chr2L_6435001 RAL-783 105 chr2L 6544372 6544394 chr2L 6544464 6544486 7 92 3.5 1.5 2.5 2.0 114 chr2L 6544372 intron eya - chr2L 6544429 intron eya - chr2L 6544486 intron eya - chr2L_7_6540001 chr2L_6540001 RAL-783 106 chr2L 6626884 6626918 chr2L 6626969 6627000 11 84 2.0 3.5 2.8 2.9 116 chr2L 6626884 intron Oatp26F - chr2L 6626942 intron Oatp26F - chr2L 6627000 intron Oatp26F - chr2L_11_6625001 chr2L_6625001 RAL-783 107 chr2L 6799536 6799560 chr2L 6799624 6799648 8 87 4.5 0.5 2.5 2.3 112 chr2L 6799536 5` UTR CR43610 + chr2L 6799592 5` UTR CR43610 + chr2L 6799648 intergenic CR43610 +,CG17376 - chr2L_8_6795001 chr2L_6795001 RAL-783 108 chr2L 6850377 6850397 chr2L 6850460 6850480 6 83 4.0 4.0 4.0 1.2 103 chr2L 6850377 intergenic not near genes chr2L 6850428 intergenic not near genes chr2L 6850480 intergenic not near genes chr2L_6_6850001 chr2L_6850001 RAL-783 109 chr2L 6873763 6873785 chr2L 6873847 6873869 4 84 0.5 1.0 0.8 2.2 106 chr2L 6873763 intron CR44914 + chr2L 6873816 intron CR44914 + chr2L 6873869 intron CR44914 + chr2L_4_6870001 chr2L_6870001 RAL-783 110 chr2L 6876779 6876810 chr2L 6882968 6882993 diver 5 6188 3.0 3.0 3.0 1.2 6214 chr2L 6876779 intron Nlg2 + chr2L 6879886 intron Nlg2 + chr2L 6882993 intron Nlg2 + chr2L_5_6875001 chr2L_6875001 RAL-783 111 chr2L 7100985 7101015 chr2L 7101211 7101241 12 226 3.5 2.5 3.0 3.0 256 chr2L 7100985 intron Pvf3 - chr2L 7101113 intron Pvf3 - chr2L 7101241 intron Pvf3 - chr2L_12_7100001 chr2L_7100001 RAL-783 112 chr2L 7179106 7179137 chr2L 7179190 7179221 12 83 2.5 5.0 3.8 2.5 115 chr2L 7179106 intergenic not near genes chr2L 7179164 intergenic not near genes chr2L 7179221 intergenic not near genes chr2L_12_7175001 chr2L_7175001 RAL-783 113 chr2L 7301297 7301330 chr2L 7301380 7301413 14 82 2.0 0.0 1.0 7.0 116 chr2L 7301297 intergenic not near genes chr2L 7301355 intergenic not near genes chr2L 7301413 intergenic not near genes chr2L_14_7300001 chr2L_7300001 RAL-783 114 chr2L 7325936 7325942 chr2L 7326021 7326026 4 84 3.5 0.0 1.8 1.4 90 chr2L 7325936 intergenic not near genes chr2L 7325981 intergenic not near genes chr2L 7326026 intergenic not near genes chr2L_4_7325001 chr2L_7325001 RAL-783 115 chr2L 7399306 7399332 chr2L 7399679 7399703 8 372 1.0 5.5 3.2 1.9 397 chr2L 7399306 intergenic not near genes chr2L 7399504 intergenic not near genes chr2L 7399703 intergenic not near genes chr2L_8_7395001 chr2L_7395001 RAL-783 116 chr2L 7484689 7484719 chr2L 7484796 7484827 5 107 2.0 2.0 2.0 1.7 138 chr2L 7484689 intron Ziz - chr2L 7484758 intron Ziz - chr2L 7484827 intron Ziz - chr2L_5_7480001 chr2L_7480001 RAL-783 117 chr2L 7567485 7567515 chr2L 7567562 7567592 5 76 3.5 2.0 2.8 1.3 107 chr2L 7567485 intron RapGAP1 - chr2L 7567538 intron RapGAP1 - chr2L 7567592 intron RapGAP1 - chr2L_5_7565001 chr2L_7565001 RAL-783 118 chr2L 7765820 7765831 chr2L 7765914 7765925 5 94 3.0 0.0 1.5 2.0 105 chr2L 7765820 3` UTR CG7196 + chr2L 7765872 3` UTR CG7196 + chr2L 7765925 intergenic CG7196 + chr2L_5_7765001 chr2L_7765001 RAL-783 119 chr2L 7768849 7768880 chr2L 7768925 7768956 7 75 0.5 3.5 2.0 2.3 107 chr2L 7768849 intron CG7191 + chr2L 7768902 intron CG7191 + chr2L 7768956 intron CG7191 + chr2L_7_7765001 chr2L_7765001 RAL-783 120 chr2L 7867566 7867602 chr2L 7867660 7867681 7 91 1.0 2.5 1.8 2.5 115 chr2L 7867566 intron Proc - chr2L 7867624 intron Proc - chr2L 7867681 intron Proc - chr2L_7_7865001 chr2L_7865001 RAL-783 121 chr2L 7959041 7959073 chr2L 7960452 7960484 pogo 18 1411 0.5 3.0 1.8 6.4 1443 chr2L 7959041 intron Snoo - chr2L 7959762 intron Snoo - chr2L 7960484 intron Snoo - chr2L_18_7955001 chr2L_7955001 RAL-783 122 chr2L 7977087 7977108 chr2L 7984061 7984083 297 8 6975 3.0 6.0 4.5 1.5 6996 chr2L 7977087 intron Snoo - chr2L 7980585 intron Snoo - chr2L 7984083 intron,5` UTR Snoo -,CG7231 + chr2L_8_7980001 chr2L_7980001 RAL-783 123 chr2L 8044113 8044129 chr2L 8044192 8044208 6 78 2.5 5.0 3.8 1.2 95 chr2L 8044113 intron CG7466 + chr2L 8044160 intron CG7466 + chr2L 8044208 intron CG7466 + chr2L_6_8040001 chr2L_8040001 RAL-783 124 chr2L 8171278 8171297 chr2L 8171359 8171378 4 81 0.0 2.5 1.2 1.8 100 chr2L 8171278 intron Piezo + chr2L 8171328 intron Piezo + chr2L 8171378 intron Piezo + chr2L_4_8170001 chr2L_8170001 RAL-783 125 chr2L 8171298 8171301 chr2L 8171351 8171382 4 74 0.0 2.5 1.2 1.8 84 chr2L 8171298 intron Piezo + chr2L 8171340 intron Piezo + chr2L 8171382 intron Piezo + chr2L_4_8170001 chr2L_8170001 RAL-783 126 chr2L 8244731 8244743 chr2L 8244853 8244864 6 121 0.0 1.5 0.8 3.3 133 chr2L 8244731 intron CG8086 - chr2L 8244798 intron CG8086 - chr2L 8244864 intron CG8086 - chr2L_6_8240001 chr2L_8240001 RAL-783 127 chr2L 8286300 8286329 chr2L 8286387 8286416 7 85 2.0 4.5 3.2 1.7 116 chr2L 8286300 intron Btk29A - chr2L 8286358 intron Btk29A - chr2L 8286416 intron Btk29A - chr2L_7_8285001 chr2L_8285001 RAL-783 128 chr2L 8336941 8336966 chr2L 8337020 8337045 4 79 1.5 2.0 1.8 1.4 104 chr2L 8336941 intergenic not near genes chr2L 8336993 intergenic not near genes chr2L 8337045 intergenic not near genes chr2L_4_8335001 chr2L_8335001 RAL-783 129 chr2L 8452420 8452452 chr2L 8461591 8461623 roo 6 9170 1.5 1.0 1.2 2.7 9203 chr2L 8452420 intron fu12 - chr2L 8457022 intron fu12 - chr2L 8461623 intron fu12 - chr2L_6_8455001 chr2L_8455001 RAL-783 130 chr2L 8502663 8502690 chr2L 8502747 8502774 10 83 1.0 1.0 1.0 5.0 111 chr2L 8502663 intron Dh31 - chr2L 8502718 intron Dh31 - chr2L 8502774 intron Dh31 - chr2L_10_8500001 chr2L_8500001 RAL-783 131 chr2L 8723116 8723146 chr2L 8731493 8731521 Tirant 7 8377 3.5 3.0 3.2 1.7 8405 chr2L 8723116 intron raw - chr2L 8727318 intron raw - chr2L 8731521 intron raw - chr2L_7_8725001 chr2L_8725001 RAL-783 132 chr2L 8799801 8799830 chr2L 8799917 8799946 6 116 1.0 3.0 2.0 2.0 145 chr2L 8799801 intergenic not near genes chr2L 8799874 intergenic not near genes chr2L 8799946 intergenic not near genes chr2L_6_8795001 chr2L_8795001 RAL-783 133 chr2L 8815445 8815473 chr2L 8815528 8815541 11 78 5.0 5.5 5.2 1.8 96 chr2L 8815445 intergenic not near genes chr2L 8815493 intergenic not near genes chr2L 8815541 intergenic not near genes chr2L_11_8815001 chr2L_8815001 RAL-783 134 chr2L 8815745 8815777 chr2L 8815826 8815857 5 81 4.0 1.5 2.8 1.3 112 chr2L 8815745 intergenic not near genes chr2L 8815801 intergenic not near genes chr2L 8815857 intergenic not near genes chr2L_5_8815001 chr2L_8815001 RAL-783 135 chr2L 8967119 8967131 chr2L 8967215 8967229 4 97 1.0 2.0 1.5 1.6 110 chr2L 8967119 intergenic CG32984 +,CG18088 + chr2L 8967174 intergenic CG32984 +,CG18088 + chr2L 8967229 intergenic CG32984 +,CG18088 + chr2L_4_8965001 chr2L_8965001 RAL-783 136 chr2L 9000284 9000302 chr2L 9007794 9007805 roo 4 7508 1.5 5.5 3.5 0.9 7521 chr2L 9000284 intergenic Try29F + chr2L 9004044 intergenic not near genes chr2L 9007805 intergenic not near genes chr2L_4_9000001 chr2L_9000001 RAL-783 137 chr2L 9025819 9025851 chr2L 9025903 9025934 9 83 2.5 1.0 1.8 3.2 115 chr2L 9025819 intron,3` UTR CG9582 -,CR44352 - chr2L 9025876 intron,3` UTR CG9582 -,CR44352 - chr2L 9025934 intron,3` UTR CG9582 -,CR44352 - chr2L_9_9025001 chr2L_9025001 RAL-783 138 chr2L 9073266 9073298 chr2L 9073352 9073384 7 84 0.5 2.5 1.5 2.8 118 chr2L 9073266 intergenic not near genes chr2L 9073325 intergenic not near genes chr2L 9073384 intergenic not near genes chr2L_7_9070001 chr2L_9070001 RAL-783 139 chr2L 9080716 9080730 chr2L 9080792 9080820 8 90 2.5 3.5 3.0 2.0 104 chr2L 9080716 intergenic not near genes chr2L 9080768 intergenic not near genes chr2L 9080820 intergenic not near genes chr2L_8_9080001 chr2L_9080001 RAL-783 140 chr2L 9084336 9084340 chr2L 16217660 16217660 10 7133322 8.0 14.0 11.0 0.8 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_10_12650001 chr2L_12650001 RAL-783 141 chr2L 9117260 9117284 chr2L 9117348 9117372 5 88 1.5 1.5 1.5 2.0 112 chr2L 9117260 intergenic not near genes chr2L 9117316 intergenic not near genes chr2L 9117372 intergenic not near genes chr2L_5_9115001 chr2L_9115001 RAL-783 142 chr2L 9154882 9154908 chr2L 9154965 9154991 5 83 0.0 0.0 0.0 5.0 109 chr2L 9154882 intron CG32982 + chr2L 9154936 intron CG32982 + chr2L 9154991 intron CG32982 + chr2L_5_9150001 chr2L_9150001 RAL-783 143 chr2L 9287331 9287351 chr2L 9287425 9287447 6 95 2.0 2.5 2.2 1.9 116 chr2L 9287331 intron Ggamma30A + chr2L 9287389 intron Ggamma30A + chr2L 9287447 intron Ggamma30A + chr2L_6_9285001 chr2L_9285001 RAL-783 144 chr2L 9297382 9297405 chr2L 9297457 9297482 6 76 2.0 3.5 2.8 1.6 100 chr2L 9297382 3` UTR Ggamma30A + chr2L 9297432 3` UTR Ggamma30A + chr2L 9297482 3` UTR Ggamma30A + chr2L_6_9295001 chr2L_9295001 RAL-783 145 chr2L 9304350 9304367 chr2L 9304434 9304451 6 84 1.5 0.0 0.8 3.3 101 chr2L 9304350 intergenic CR42844 - chr2L 9304400 intergenic CR42844 - chr2L 9304451 3` UTR CR42844 - chr2L_6_9300001 chr2L_9300001 RAL-783 146 chr2L 9397375 9397407 chr2L 9397456 9397487 12 80 14.0 15.0 14.5 0.8 112 chr2L 9397375 intron,exon Shawl -,CG4438 - chr2L 9397431 intron,exon Shawl -,CG4438 - chr2L 9397487 intron,exon Shawl -,CG4438 - chr2L_12_9395001 chr2L_9395001 RAL-783 147 chr2L 9454987 9454996 chr2L 9455088 9455098 7 102 4.0 0.5 2.2 2.2 111 chr2L 9454987 intron numb + chr2L 9455042 intron numb + chr2L 9455098 intron numb + chr2L_7_9455001 chr2L_9455001 RAL-783 148 chr2L 9493254 9493273 chr2L 9493331 9493357 6 82 2.5 3.0 2.8 1.6 103 chr2L 9493254 intron Gdi - chr2L 9493306 intron Gdi - chr2L 9493357 intron Gdi - chr2L_6_9490001 chr2L_9490001 RAL-783 149 chr2L 9622921 9622932 chr2L 9623003 9623014 4 82 1.5 1.5 1.5 1.6 93 chr2L 9622921 3` UTR GlcAT-S + chr2L 9622968 3` UTR GlcAT-S + chr2L 9623014 3` UTR GlcAT-S + chr2L_4_9620001 chr2L_9620001 RAL-783 150 chr2L 9724925 9724948 chr2L 9725265 9725288 7 341 0.5 1.5 1.0 3.5 363 chr2L 9724925 intron Nckx30C - chr2L 9725106 intron Nckx30C - chr2L 9725288 intron Nckx30C - chr2L_7_9725001 chr2L_9725001 RAL-783 151 chr2L 9730975 9731006 chr2L 9731058 9731083 6 82 3.5 1.0 2.2 1.9 108 chr2L 9730975 intron Nckx30C - chr2L 9731029 intron Nckx30C - chr2L 9731083 intron Nckx30C - chr2L_6_9730001 chr2L_9730001 RAL-783 152 chr2L 9837435 9837440 chr2L 9837513 9837518 4 78 1.5 2.0 1.8 1.4 83 chr2L 9837435 intron nAChRalpha6 - chr2L 9837476 intron nAChRalpha6 - chr2L 9837518 intron nAChRalpha6 - chr2L_4_9835001 chr2L_9835001 RAL-783 153 chr2L 9852769 9852799 chr2L 9852848 9852878 6 79 3.0 0.0 1.5 2.4 109 chr2L 9852769 intron nAChRalpha6 - chr2L 9852824 intron nAChRalpha6 - chr2L 9852878 intron nAChRalpha6 - chr2L_6_9850001 chr2L_9850001 RAL-783 154 chr2L 9973732 9973759 chr2L 9980850 9980878 HMS-Beagle 10 7117 2.0 4.5 3.2 2.4 7146 chr2L 9973732 intergenic not near genes chr2L 9977305 intergenic not near genes chr2L 9980878 intergenic not near genes chr2L_10_9975001 chr2L_9975001 RAL-783 155 chr2L 9986352 9986383 chr2L 9986447 9986471 11 91 4.5 2.0 3.2 2.6 119 chr2L 9986352 intron bib + chr2L 9986412 intron bib + chr2L 9986471 intron bib + chr2L_11_9985001 chr2L_9985001 RAL-783 156 chr2L 10050388 10050410 chr2L 10050470 10050494 9 83 5.5 2.5 4.0 1.8 106 chr2L 10050388 exon CG33301 + chr2L 10050441 exon CG33301 + chr2L 10050494 exon CG33301 + chr2L_9_10050001 chr2L_10050001 RAL-783 157 chr2L 10051732 10051753 chr2L 10051806 10051838 12 82 5.5 4.5 5.0 2.0 106 chr2L 10051732 5` UTR CR44874 + chr2L 10051785 5` UTR CR44874 + chr2L 10051838 5` UTR CR44874 + chr2L_12_10050001 chr2L_10050001 RAL-783 158 chr2L 10156328 10156355 chr2L 10163790 10163825 blood 11 7468 1.0 4.0 2.5 3.1 7497 chr2L 10156328 intron,3` UTR CG44153 -,CG4839 + chr2L 10160076 intron CG44153 - chr2L 10163825 intron CG44153 - chr2L_11_10160001 chr2L_10160001 RAL-783 159 chr2L 10515364 10515391 chr2L 10515457 10515483 6 93 0.0 0.5 0.2 5.0 119 chr2L 10515364 intron,intron CG45083 -,Fatp - chr2L 10515424 intron,intron CG45083 -,Fatp - chr2L 10515483 intron,intron CG45083 -,Fatp - chr2L_6_10515001 chr2L_10515001 RAL-783 160 chr2L 10521539 10521558 chr2L 10521615 10521634 6 76 2.0 2.0 2.0 2.0 95 chr2L 10521539 intergenic not near genes chr2L 10521586 intergenic not near genes chr2L 10521634 intergenic not near genes chr2L_6_10520001 chr2L_10520001 RAL-783 161 chr2L 10563910 10563940 chr2L 10564003 10564032 4 92 4.0 1.0 2.5 1.1 122 chr2L 10563910 intron Trim9 + chr2L 10563971 intron Trim9 + chr2L 10564032 intron Trim9 + chr2L_4_10560001 chr2L_10560001 RAL-783 162 chr2L 10580805 10580823 chr2L 10580883 10580904 5 80 1.5 3.0 2.2 1.6 99 chr2L 10580805 intron Trim9 + chr2L 10580854 intron Trim9 + chr2L 10580904 intron Trim9 + chr2L_5_10580001 chr2L_10580001 RAL-783 163 chr2L 10704919 10704927 chr2L 10705014 10705022 5 95 2.5 2.5 2.5 1.4 103 chr2L 10704919 intron,3` UTR Lip2 -,CG6415 + chr2L 10704970 intron Lip2 - chr2L 10705022 intron Lip2 - chr2L_5_10700001 chr2L_10700001 RAL-783 164 chr2L 10862845 10862875 chr2L 10864458 10864489 Rt1c 10 1613 2.5 3.5 3.0 2.5 1644 chr2L 10862845 3` UTR CR43807 - chr2L 10863667 intron CR43807 - chr2L 10864489 3` UTR CR43807 - chr2L_10_10860001 chr2L_10860001 RAL-783 165 chr2L 10939826 10939846 chr2L 10940229 10940249 6 403 0.0 1.5 0.8 3.3 423 chr2L 10939826 intron dpr2 - chr2L 10940038 intron dpr2 - chr2L 10940249 intron dpr2 - chr2L_6_10940001 chr2L_10940001 RAL-783 166 chr2L 10946954 10946960 chr2L 10956168 10956175 roo 4 9214 6.0 6.5 6.2 0.6 9221 chr2L 10946954 intron dpr2 - chr2L 10951564 intron dpr2 - chr2L 10956175 intron dpr2 - chr2L_4_10950001 chr2L_10950001 RAL-783 167 chr2L 10946962 10946976 chr2L 10956166 10956191 roo 5 9212 3.0 6.5 4.8 0.9 9229 chr2L 10946962 intron dpr2 - chr2L 10951576 intron dpr2 - chr2L 10956191 intron dpr2 - chr2L_5_10950001 chr2L_10950001 RAL-783 168 chr2L 11100581 11100610 chr2L 11100671 11100700 12 89 4.5 1.0 2.8 3.2 119 chr2L 11100581 5` UTR Ge-1 - chr2L 11100640 5` UTR Ge-1 - chr2L 11100700 5` UTR Ge-1 - chr2L_12_11100001 chr2L_11100001 RAL-783 169 chr2L 11111942 11111972 chr2L 11119378 11119408 11 7437 24.5 24.5 24.5 0.4 7466 chr2L 11111942 intron CG6201 - chr2L 11115675 exon,3` UTR Gr32a +,CG6230 - chr2L 11119408 exon CG6230 - chr2L_11_11115001 chr2L_11115001 RAL-783 170 chr2L 11224060 11224083 chr2L 11224170 11224194 7 111 1.0 3.0 2.0 2.3 134 chr2L 11224060 intron ab + chr2L 11224127 intron ab + chr2L 11224194 intron ab + chr2L_7_11220001 chr2L_11220001 RAL-783 171 chr2L 11292396 11292402 chr2L 11292478 11292484 6 82 4.0 5.5 4.8 1.0 88 chr2L 11292396 intergenic not near genes chr2L 11292440 intergenic not near genes chr2L 11292484 intergenic not near genes chr2L_6_11290001 chr2L_11290001 RAL-783 172 chr2L 11364495 11364507 chr2L 11364571 11364575 6 74 2.5 3.0 2.8 1.6 80 chr2L 11364495 intron salr + chr2L 11364535 intron salr + chr2L 11364575 intron salr + chr2L_6_11360001 chr2L_11360001 RAL-783 173 chr2L 11380613 11380640 chr2L 11380690 11380716 11 77 0.5 1.5 1.0 5.5 103 chr2L 11380613 intergenic not near genes chr2L 11380664 intergenic not near genes chr2L 11380716 intergenic not near genes chr2L_11_11380001 chr2L_11380001 RAL-783 174 chr2L 11418662 11418688 chr2L 11418741 11418767 7 79 0.5 3.5 2.0 2.3 105 chr2L 11418662 intergenic not near genes chr2L 11418714 intergenic not near genes chr2L 11418767 intergenic not near genes chr2L_7_11415001 chr2L_11415001 RAL-783 175 chr2L 11536721 11536730 chr2L 11536801 11536810 5 80 2.5 0.0 1.2 2.3 89 chr2L 11536721 3` UTR CG43438 + chr2L 11536766 3` UTR CG43438 + chr2L 11536810 3` UTR CG43438 + chr2L_5_11535001 chr2L_11535001 RAL-783 176 chr2L 11540581 11540613 chr2L 11547983 11548015 Tabor 4 7402 2.5 0.5 1.5 1.6 7434 chr2L 11540581 intergenic not near genes chr2L 11544298 intergenic not near genes chr2L 11548015 intergenic not near genes chr2L_4_11540001 chr2L_11540001 RAL-783 177 chr2L 11563642 11563668 chr2L 11568846 11568870 copia 8 5204 2.5 4.0 3.2 1.9 5228 chr2L 11563642 intergenic not near genes chr2L 11566256 intergenic not near genes chr2L 11568870 intergenic not near genes chr2L_8_11565001 chr2L_11565001 RAL-783 178 chr2L 11713507 11713537 chr2L 11720975 11721005 blood 8 7468 1.0 3.0 2.0 2.7 7498 chr2L 11713507 intergenic not near genes chr2L 11717256 intergenic not near genes chr2L 11721005 intergenic CR44143 + chr2L_8_11715001 chr2L_11715001 RAL-783 179 chr2L 12031385 12031390 chr2L 12031466 12031471 4 81 1.0 2.0 1.5 1.6 86 chr2L 12031385 intron dmGlut + chr2L 12031428 intron dmGlut + chr2L 12031471 intron dmGlut + chr2L_4_12030001 chr2L_12030001 RAL-783 180 chr2L 12153940 12153962 chr2L 12154012 12154028 5 73 2.0 3.0 2.5 1.4 88 chr2L 12153940 exon CG31760 + chr2L 12153984 intron CG31760 + chr2L 12154028 intron CG31760 + chr2L_5_12150001 chr2L_12150001 RAL-783 181 chr2L 12192361 12192364 chr2L 12192486 12192489 4 125 1.0 3.0 2.0 1.3 128 chr2L 12192361 intron aret + chr2L 12192425 intron aret + chr2L 12192489 intron aret + chr2L_4_12190001 chr2L_12190001 RAL-783 182 chr2L 12250697 12250713 chr2L 12250774 12250790 4 77 3.5 3.5 3.5 0.9 93 chr2L 12250697 intron aret + chr2L 12250744 intron aret + chr2L 12250790 intron aret + chr2L_4_12250001 chr2L_12250001 RAL-783 183 chr2L 12254026 12254049 chr2L 12254118 12254141 8 92 2.0 0.0 1.0 4.0 115 chr2L 12254026 intron aret + chr2L 12254084 intron aret + chr2L 12254141 intron aret + chr2L_8_12250001 chr2L_12250001 RAL-783 184 chr2L 12258327 12258353 chr2L 12258422 12258451 10 98 3.0 2.0 2.5 2.9 124 chr2L 12258327 intron aret + chr2L 12258389 intron aret + chr2L 12258451 intron aret + chr2L_10_12255001 chr2L_12255001 RAL-783 185 chr2L 12349632 12349663 chr2L 12349726 12349757 9 94 2.0 1.5 1.8 3.2 125 chr2L 12349632 intron bru-2 + chr2L 12349694 intron bru-2 + chr2L 12349757 intron bru-2 + chr2L_9_12345001 chr2L_12345001 RAL-783 186 chr2L 12383817 12383832 chr2L 12383896 12383914 5 81 7.5 1.5 4.5 0.9 97 chr2L 12383817 intron bru-2 + chr2L 12383866 intron bru-2 + chr2L 12383914 intron bru-2 + chr2L_5_12380001 chr2L_12380001 RAL-783 187 chr2L 12383835 12383844 chr2L 12383895 12383925 4 76 4.0 1.5 2.8 1.1 90 chr2L 12383835 intron bru-2 + chr2L 12383880 intron bru-2 + chr2L 12383925 intron bru-2 + chr2L_4_12380001 chr2L_12380001 RAL-783 188 chr2L 12396655 12396680 chr2L 12396737 12396762 4 82 2.0 3.5 2.8 1.1 107 chr2L 12396655 3` UTR bru-2 + chr2L 12396708 3` UTR bru-2 + chr2L 12396762 3` UTR bru-2 + chr2L_4_12395001 chr2L_12395001 RAL-783 189 chr2L 12397620 12397640 chr2L 12397930 12397951 4 315 0.0 2.0 1.0 2.0 331 chr2L 12397620 intergenic bru-2 + chr2L 12397786 intergenic bru-2 +,Pkd2 + chr2L 12397951 intergenic Pkd2 +,bru-2 + chr2L_4_12395001 chr2L_12395001 RAL-783 190 chr2L 12487893 12487918 chr2L 12487973 12487997 10 78 2.0 3.0 2.5 2.9 104 chr2L 12487893 intron bun - chr2L 12487945 intron bun - chr2L 12487997 intron bun - chr2L_10_12485001 chr2L_12485001 RAL-783 191 chr2L 12529248 12529438 chr2L 12529381 12529514 9 88 1.5 1.5 1.5 3.6 266 chr2L 12529248 intron bun - chr2L 12529381 intron bun - chr2L 12529514 intron bun - chr2L_9_12525001 chr2L_12525001 RAL-783 192 chr2L 12558318 12558346 chr2L 12565447 12565475 HMS-Beagle 6 7129 2.0 0.0 1.0 3.0 7157 chr2L 12558318 intergenic not near genes chr2L 12561896 intergenic not near genes chr2L 12565475 intergenic not near genes chr2L_6_12560001 chr2L_12560001 RAL-783 193 chr2L 12682876 12682906 chr2L 12682954 12682958 8 75 3.5 3.0 3.2 1.9 82 chr2L 12682876 intron pdm2 + chr2L 12682917 intron pdm2 + chr2L 12682958 intron pdm2 + chr2L_8_12680001 chr2L_12680001 RAL-783 194 chr2L 12728929 12728947 chr2L 12729165 12729186 pogo 7 239 2.5 2.0 2.2 2.2 257 chr2L 12728929 intron MRP + chr2L 12729058 intron MRP + chr2L 12729186 exon MRP + chr2L_7_12725001 chr2L_12725001 RAL-783 195 chr2L 12731056 12731093 chr2L 12735823 12735860 F-element 4 4767 1.5 1.0 1.2 1.8 4804 chr2L 12731056 intron MRP + chr2L 12733458 intron MRP + chr2L 12735860 intron MRP + chr2L_4_12730001 chr2L_12730001 RAL-783 196 chr2L 12739173 12739199 chr2L 12743954 12743980 Doc 7 4781 2.5 4.0 3.2 1.7 4807 chr2L 12739173 exon MRP + chr2L 12741576 intron MRP + chr2L 12743980 exon MRP + chr2L_7_12740001 chr2L_12740001 RAL-783 197 chr2L 12751310 12751341 chr2L 12751393 12751420 14 81 0.5 4.0 2.2 4.4 110 chr2L 12751310 intergenic not near genes chr2L 12751365 intergenic not near genes chr2L 12751420 intergenic not near genes chr2L_14_12750001 chr2L_12750001 RAL-783 198 chr2L 12766761 12766775 chr2L 12766838 12766853 5 78 2.5 0.0 1.2 2.3 92 chr2L 12766761 intergenic not near genes chr2L 12766807 intergenic not near genes chr2L 12766853 intergenic not near genes chr2L_5_12765001 chr2L_12765001 RAL-783 199 chr2L 12861695 12861715 chr2L 12863162 12863182 hobo 7 1467 3.5 2.0 2.8 1.8 1487 chr2L 12861695 intergenic not near genes chr2L 12862438 intergenic not near genes chr2L 12863182 intergenic not near genes chr2L_7_12860001 chr2L_12860001 RAL-783 200 chr2L 12933853 12933877 chr2L 12941319 12941344 blood 8 7466 7.5 2.0 4.8 1.4 7491 chr2L 12933853 intergenic not near genes chr2L 12937598 intergenic not near genes chr2L 12941344 intergenic not near genes chr2L_8_12935001 chr2L_12935001 RAL-783 201 chr2L 12963796 12963825 chr2L 12963898 12963927 7 98 3.0 2.0 2.5 2.0 131 chr2L 12963796 intergenic not near genes chr2L 12963862 intergenic not near genes chr2L 12963927 intergenic not near genes chr2L_7_12960001 chr2L_12960001 RAL-783 202 chr2L 13036249 13036270 chr2L 13036491 13036512 X-element 5 242 1.0 1.0 1.0 2.5 263 chr2L 13036249 intron CG9932 - chr2L 13036380 intron CG9932 - chr2L 13036512 intron CG9932 - chr2L_5_13035001 chr2L_13035001 RAL-783 203 chr2L 13088966 13088986 chr2L 13089046 13089066 8 79 5.5 5.5 5.5 1.2 100 chr2L 13088966 intergenic not near genes chr2L 13089016 intergenic not near genes chr2L 13089066 intergenic not near genes chr2L_8_13085001 chr2L_13085001 RAL-783 204 chr2L 13113411 13113428 chr2L 13113556 13113572 4 145 1.5 0.0 0.8 2.2 161 chr2L 13113411 intergenic not near genes chr2L 13113492 intergenic not near genes chr2L 13113572 intergenic not near genes chr2L_4_13110001 chr2L_13110001 RAL-783 205 chr2L 13333373 13333401 chr2L 13333457 13333485 5 84 0.5 0.5 0.5 3.3 112 chr2L 13333373 intergenic not near genes chr2L 13333429 intergenic not near genes chr2L 13333485 intergenic not near genes chr2L_5_13330001 chr2L_13330001 RAL-783 206 chr2L 13405647 13405683 chr2L 13410444 13410480 Doc 12 4796 2.5 4.0 3.2 2.9 4833 chr2L 13405647 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410480 intron CG7110 + chr2L_12_13405001 chr2L_13405001 RAL-783 207 chr2L 13422484 13422506 chr2L 13422563 13422584 4 79 0.0 2.5 1.2 1.8 100 chr2L 13422484 intron CG42784 + chr2L 13422534 intron CG42784 + chr2L 13422584 intron CG42784 + chr2L_4_13420001 chr2L_13420001 RAL-783 208 chr2L 13449466 13449496 chr2L 13456902 13456932 Quasimodo 6 7436 1.5 3.0 2.2 1.9 7466 chr2L 13449466 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453199 intron CG42784 + chr2L 13456932 intron CG42784 + chr2L_6_13450001 chr2L_13450001 RAL-783 209 chr2L 13481450 13481475 chr2L 13482057 13482081 jockey 9 607 2.5 6.5 4.5 1.6 631 chr2L 13481450 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482081 intron CG42784 + chr2L_9_13480001 chr2L_13480001 RAL-783 210 chr2L 13620114 13620138 chr2L 13620335 13620363 7 225 2.0 2.0 2.0 2.3 249 chr2L 13620114 intron kuz + chr2L 13620238 intron kuz + chr2L 13620363 intron kuz + chr2L_7_13620001 chr2L_13620001 RAL-783 211 chr2L 13622141 13622155 chr2L 13622239 13622254 8 98 1.0 1.5 1.2 3.6 113 chr2L 13622141 intron kuz + chr2L 13622198 intron kuz + chr2L 13622254 intron kuz + chr2L_8_13620001 chr2L_13620001 RAL-783 212 chr2L 13692158 13692187 chr2L 13692234 13692262 4 76 2.0 2.0 2.0 1.3 104 chr2L 13692158 intron CG31814 - chr2L 13692210 intron CG31814 - chr2L 13692262 intron CG31814 - chr2L_4_13690001 chr2L_13690001 RAL-783 213 chr2L 13757012 13757045 chr2L 13757106 13757139 8 94 1.5 5.0 3.2 1.9 127 chr2L 13757012 intron TM9SF4 + chr2L 13757076 intron TM9SF4 + chr2L 13757139 intron TM9SF4 + chr2L_8_13755001 chr2L_13755001 RAL-783 214 chr2L 13761804 13761828 chr2L 13762915 13762939 Doc 7 1110 3.0 3.5 3.2 1.7 1135 chr2L 13761804 intron TM9SF4 + chr2L 13762372 intron TM9SF4 + chr2L 13762939 intron TM9SF4 + chr2L_7_13760001 chr2L_13760001 RAL-783 215 chr2L 13853087 13853111 chr2L 13862237 13862261 roo 7 9149 5.0 0.5 2.8 1.8 9174 chr2L 13853087 intron CenG1A + chr2L 13857674 intron CenG1A + chr2L 13862261 intron CenG1A + chr2L_7_13855001 chr2L_13855001 RAL-783 216 chr2L 13913596 13913604 chr2L 13913708 13913717 5 113 7.5 3.5 5.5 0.8 121 chr2L 13913596 intergenic not near genes chr2L 13913656 intergenic not near genes chr2L 13913717 intergenic not near genes chr2L_5_13910001 chr2L_13910001 RAL-783 217 chr2L 13977794 13977820 chr2L 13978121 13978124 4 320 2.5 0.0 1.2 1.8 330 chr2L 13977794 exon Cyp28a5 + chr2L 13977959 intron Cyp28a5 + chr2L 13978124 intron Cyp28a5 + chr2L_4_13975001 chr2L_13975001 RAL-783 218 chr2L 13988282 13988376 chr2L 13988369 13988457 5 82 0.5 0.5 0.5 3.3 175 chr2L 13988282 intron rk - chr2L 13988370 intron rk - chr2L 13988457 intron rk - chr2L_5_13985001 chr2L_13985001 RAL-783 219 chr2L 13995087 13995112 chr2L 13997222 13997246 4 2134 8.5 21.5 15.0 0.2 2159 chr2L 13995087 intron rk - chr2L 13996166 intron rk - chr2L 13997246 intron rk - chr2L_4_13995001 chr2L_13995001 RAL-783 220 chr2L 14180065 14180086 chr2L 14180141 14180162 9 76 2.5 4.0 3.2 2.1 97 chr2L 14180065 intron CG43333 - chr2L 14180114 intron CG43333 - chr2L 14180162 intron CG43333 - chr2L_9_14180001 chr2L_14180001 RAL-783 221 chr2L 14237133 14237161 chr2L 14237219 14237247 7 86 0.0 2.0 1.0 3.5 114 chr2L 14237133 intergenic not near genes chr2L 14237190 intergenic not near genes chr2L 14237247 intergenic not near genes chr2L_7_14235001 chr2L_14235001 RAL-783 222 chr2L 14246289 14246314 chr2L 14246367 14246392 9 77 0.0 0.0 0.0 9.0 103 chr2L 14246289 intergenic not near genes chr2L 14246340 intergenic not near genes chr2L 14246392 intergenic not near genes chr2L_9_14245001 chr2L_14245001 RAL-783 223 chr2L 14408778 14408809 chr2L 14408978 14409009 10 199 1.5 3.0 2.2 3.1 231 chr2L 14408778 5` UTR elB - chr2L 14408894 5` UTR elB - chr2L 14409009 5` UTR elB - chr2L_10_14405001 chr2L_14405001 RAL-783 224 chr2L 14429433 14429452 chr2L 14429514 14429533 6 81 1.5 1.5 1.5 2.4 100 chr2L 14429433 3` UTR CR44732 - chr2L 14429483 3` UTR CR44732 - chr2L 14429533 3` UTR CR44732 - chr2L_6_14425001 chr2L_14425001 RAL-783 225 chr2L 14588382 14588408 chr2L 14588536 14588562 5 154 2.5 1.5 2.0 1.7 180 chr2L 14588382 intergenic CG42680 - chr2L 14588472 intergenic CG42680 - chr2L 14588562 intergenic CG42680 - chr2L_5_14585001 chr2L_14585001 RAL-783 226 chr2L 14621374 14621405 chr2L 14621474 14621505 8 99 3.0 1.5 2.2 2.5 131 chr2L 14621374 intron osp - chr2L 14621440 intron osp - chr2L 14621505 intron osp - chr2L_8_14620001 chr2L_14620001 RAL-783 227 chr2L 14642580 14642600 chr2L 14651743 14651763 roo 8 9163 1.5 3.5 2.5 2.3 9183 chr2L 14642580 intron osp - chr2L 14647172 intron osp - chr2L 14651763 intron osp - chr2L_8_14645001 chr2L_14645001 RAL-783 228 chr2L 14707207 14707239 chr2L 14707326 14707358 15 119 2.0 2.0 2.0 5.0 151 chr2L 14707207 intergenic not near genes chr2L 14707282 intergenic not near genes chr2L 14707358 intergenic not near genes chr2L_15_14705001 chr2L_14705001 RAL-783 229 chr2L 14771842 14771865 chr2L 14771923 14771948 5 82 0.0 5.5 2.8 1.3 106 chr2L 14771842 intergenic not near genes chr2L 14771895 intergenic not near genes chr2L 14771948 intergenic not near genes chr2L_5_14770001 chr2L_14770001 RAL-783 230 chr2L 14803883 14803912 chr2L 14809084 14809114 copia 5 5202 1.5 2.0 1.8 1.8 5231 chr2L 14803883 intergenic not near genes chr2L 14806498 intergenic not near genes chr2L 14809114 intergenic not near genes chr2L_5_14805001 chr2L_14805001 RAL-783 231 chr2L 14840979 14841009 chr2L 14841066 14841096 6 87 1.0 3.5 2.2 1.9 117 chr2L 14840979 3` UTR CR43805 - chr2L 14841038 3` UTR CR43805 - chr2L 14841096 3` UTR CR43805 - chr2L_6_14840001 chr2L_14840001 RAL-783 232 chr2L 14945448 14945461 chr2L 14945544 14945557 4 96 0.5 2.5 1.5 1.6 109 chr2L 14945448 intron CG42313 - chr2L 14945502 intron CG42313 - chr2L 14945557 intron CG42313 - chr2L_4_14945001 chr2L_14945001 RAL-783 233 chr2L 15044706 15044739 chr2L 15044782 15044815 6 75 1.0 2.0 1.5 2.4 109 chr2L 15044706 intergenic ck - chr2L 15044760 intergenic ck - chr2L 15044815 intergenic ck - chr2L_6_15040001 chr2L_15040001 RAL-783 234 chr2L 15078070 15078101 chr2L 15078158 15078189 8 88 0.5 1.5 1.0 4.0 119 chr2L 15078070 intron CG15270 + chr2L 15078130 intron CG15270 + chr2L 15078189 intron CG15270 + chr2L_8_15075001 chr2L_15075001 RAL-783 235 chr2L 15141095 15141120 chr2L 15141269 15141295 5 174 1.5 0.0 0.8 2.8 200 chr2L 15141095 intergenic not near genes chr2L 15141195 intergenic not near genes chr2L 15141295 intergenic not near genes chr2L_5_15140001 chr2L_15140001 RAL-783 236 chr2L 15226374 15226393 chr2L 15226448 15226467 7 72 0.5 3.5 2.0 2.3 93 chr2L 15226374 intergenic not near genes chr2L 15226420 intergenic not near genes chr2L 15226467 intergenic not near genes chr2L_7_15225001 chr2L_15225001 RAL-783 237 chr2L 15343537 15343563 chr2L 15343622 15343648 8 85 1.0 0.0 0.5 5.3 111 chr2L 15343537 intergenic not near genes chr2L 15343592 intergenic not near genes chr2L 15343648 intergenic not near genes chr2L_8_15340001 chr2L_15340001 RAL-783 238 chr2L 15482591 15482597 chr2L 15482727 15482730 4 135 0.0 3.0 1.5 1.6 139 chr2L 15482591 intergenic not near genes chr2L 15482660 intergenic not near genes chr2L 15482730 intergenic not near genes chr2L_4_15480001 chr2L_15480001 RAL-783 239 chr2L 15511154 15511181 chr2L 15511239 15511263 4 84 1.5 1.5 1.5 1.6 109 chr2L 15511154 intergenic not near genes chr2L 15511208 intergenic not near genes chr2L 15511263 intergenic not near genes chr2L_4_15510001 chr2L_15510001 RAL-783 240 chr2L 15544381 15544405 chr2L 15544457 15544481 9 75 5.0 0.5 2.8 2.4 100 chr2L 15544381 intergenic not near genes chr2L 15544431 intergenic not near genes chr2L 15544481 intergenic not near genes chr2L_9_15540001 chr2L_15540001 RAL-783 241 chr2L 15736976 15737006 chr2L 15737057 15737091 7 84 3.5 1.5 2.5 2.0 115 chr2L 15736976 intron CycE - chr2L 15737034 intron CycE - chr2L 15737091 intron CycE - chr2L_7_15735001 chr2L_15735001 RAL-783 242 chr2L 15761099 15761106 chr2L 15761178 15761186 4 80 0.0 4.0 2.0 1.3 87 chr2L 15761099 intron Gli - chr2L 15761142 intron Gli - chr2L 15761186 intron Gli - chr2L_4_15760001 chr2L_15760001 RAL-783 243 chr2L 15956026 15956051 chr2L 15957493 15957516 hobo 4 1466 3.5 1.0 2.2 1.2 1490 chr2L 15956026 intron beat-Ib - chr2L 15956771 intron beat-Ib - chr2L 15957516 intron beat-Ib - chr2L_4_15955001 chr2L_15955001 RAL-783 244 chr2L 16043562 16043586 chr2L 16043647 16043671 5 85 0.0 1.0 0.5 3.3 109 chr2L 16043562 intron,intron BicC +,CG45084 + chr2L 16043616 intron,intron BicC +,CG45084 + chr2L 16043671 intron,intron BicC +,CG45084 + chr2L_5_16040001 chr2L_16040001 RAL-783 245 chr2L 16098932 16098954 chr2L 16099020 16099041 7 87 2.0 1.0 1.5 2.8 109 chr2L 16098932 intergenic not near genes chr2L 16098986 intergenic not near genes chr2L 16099041 intergenic not near genes chr2L_7_16095001 chr2L_16095001 RAL-783 246 chr2L 16150693 16150726 chr2L 16150772 16150796 9 77 1.5 2.5 2.0 3.0 103 chr2L 16150693 intergenic not near genes chr2L 16150744 intergenic not near genes chr2L 16150796 intergenic not near genes chr2L_9_16150001 chr2L_16150001 RAL-783 247 chr2L 16153742 16153762 chr2L 16160810 16160818 297 4 7065 1.5 1.0 1.2 1.8 7076 chr2L 16153742 intergenic not near genes chr2L 16157280 intergenic not near genes chr2L 16160818 intergenic not near genes chr2L_4_16155001 chr2L_16155001 RAL-783 248 chr2L 9084336 9084340 chr2L 16217660 16217660 8 7133321 8.0 14.0 11.0 0.7 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_8_12650001 chr2L_12650001 RAL-783 249 chr2L 16229491 16229511 chr2L 16229957 16229977 5 466 3.0 3.0 3.0 1.2 486 chr2L 16229491 intergenic not near genes chr2L 16229734 intergenic not near genes chr2L 16229977 intergenic not near genes chr2L_5_16225001 chr2L_16225001 RAL-783 250 chr2L 16254891 16254914 chr2L 16255150 16255166 6 257 1.5 2.5 2.0 2.0 275 chr2L 16254891 intron PRL-1 - chr2L 16255028 intron PRL-1 - chr2L 16255166 intron PRL-1 - chr2L_6_16255001 chr2L_16255001 RAL-783 251 chr2L 16280255 16280276 chr2L 16281426 16281445 1360 7 1170 3.5 5.5 4.5 1.3 1190 chr2L 16280255 intron crp - chr2L 16280850 intron crp - chr2L 16281445 intron crp - chr2L_7_16280001 chr2L_16280001 RAL-783 252 chr2L 16375394 16375419 chr2L 16375485 16375509 4 90 0.5 0.0 0.2 3.3 115 chr2L 16375394 intergenic not near genes chr2L 16375452 intergenic not near genes chr2L 16375509 intergenic not near genes chr2L_4_16375001 chr2L_16375001 RAL-783 253 chr2L 16505005 16505016 chr2L 16505101 16505125 4 106 0.0 0.5 0.2 3.3 120 chr2L 16505005 intron Tpr2 + chr2L 16505065 intron Tpr2 + chr2L 16505125 intron Tpr2 + chr2L_4_16505001 chr2L_16505001 RAL-783 254 chr2L 16511962 16511979 chr2L 16519076 16519093 HMS-Beagle 4 7114 2.0 1.5 1.8 1.4 7131 chr2L 16511962 intron CG5953 - chr2L 16515528 intron CG5953 - chr2L 16519093 intron CG5953 - chr2L_4_16515001 chr2L_16515001 RAL-783 255 chr2L 16688377 16688408 chr2L 16688458 16688488 8 80 1.0 1.5 1.2 3.6 111 chr2L 16688377 intron grp + chr2L 16688432 intron grp + chr2L 16688488 intron grp + chr2L_8_16685001 chr2L_16685001 RAL-783 256 chr2L 16764979 16764992 chr2L 16765059 16765072 4 80 2.0 1.5 1.8 1.4 93 chr2L 16764979 intergenic not near genes chr2L 16765026 intergenic not near genes chr2L 16765072 intergenic not near genes chr2L_4_16765001 chr2L_16765001 RAL-783 257 chr2L 16923032 16923047 chr2L 16923424 16923440 6 392 3.0 3.0 3.0 1.5 408 chr2L 16923032 intergenic not near genes chr2L 16923236 intergenic not near genes chr2L 16923440 intergenic not near genes chr2L_6_16920001 chr2L_16920001 RAL-783 258 chr2L 16939563 16939571 chr2L 16939700 16939709 5 138 1.5 1.5 1.5 2.0 146 chr2L 16939563 intergenic not near genes chr2L 16939636 intergenic not near genes chr2L 16939709 intergenic not near genes chr2L_5_16935001 chr2L_16935001 RAL-783 259 chr2L 16952685 16952709 chr2L 16952794 16952817 5 109 1.0 2.5 1.8 1.8 132 chr2L 16952685 intergenic not near genes chr2L 16952751 intergenic not near genes chr2L 16952817 intergenic not near genes chr2L_5_16950001 chr2L_16950001 RAL-783 260 chr2L 16971472 16971502 chr2L 16971549 16971579 9 74 2.5 1.5 2.0 3.0 107 chr2L 16971472 intergenic not near genes chr2L 16971526 intergenic not near genes chr2L 16971579 intergenic not near genes chr2L_9_16970001 chr2L_16970001 RAL-783 261 chr2L 17005412 17005436 chr2L 17005509 17005514 5 93 2.5 4.0 3.2 1.2 102 chr2L 17005412 intergenic not near genes chr2L 17005463 intergenic not near genes chr2L 17005514 intergenic not near genes chr2L_5_17005001 chr2L_17005001 RAL-783 262 chr2L 15761207 15761208 chr2L 17030492 17030494 4 1269285 10.0 4.5 7.2 0.5 1269287 chr2L 15761207 intron Gli - chr2L 16395850 intergenic not near genes chr2L 17030494 intergenic not near genes chr2L_4_16395001 chr2L_16395001 RAL-783 263 chr2L 17062757 17062789 chr2L 17062839 17062871 5 82 0.5 1.5 1.0 2.5 114 chr2L 17062757 intergenic not near genes chr2L 17062814 intergenic not near genes chr2L 17062871 intergenic not near genes chr2L_5_17060001 chr2L_17060001 RAL-783 264 chr2L 17122791 17122809 chr2L 17122869 17122878 6 79 2.0 1.5 1.8 2.1 87 chr2L 17122791 intergenic not near genes chr2L 17122834 intergenic CG31784 - chr2L 17122878 intergenic CG31784 - chr2L_6_17120001 chr2L_17120001 RAL-783 265 chr2L 17167567 17167595 chr2L 17167808 17167836 pogo 4 241 0.5 2.5 1.5 1.6 269 chr2L 17167567 intron,intron CG34106 +,beat-IIIa + chr2L 17167702 intron,intron CG34106 +,beat-IIIa + chr2L 17167836 intron,intron CG34106 +,beat-IIIa + chr2L_4_17165001 chr2L_17165001 RAL-783 266 chr2L 17226098 17226124 chr2L 17226177 17226203 5 79 1.5 1.5 1.5 2.0 105 chr2L 17226098 intron beat-IIIc - chr2L 17226150 intron beat-IIIc - chr2L 17226203 intron beat-IIIc - chr2L_5_17225001 chr2L_17225001 RAL-783 267 chr2L 17273200 17273220 chr2L 17277973 17277983 F-element 5 4777 4.5 2.5 3.5 1.1 4783 chr2L 17273200 intergenic not near genes chr2L 17275592 intergenic not near genes chr2L 17277983 intergenic not near genes chr2L_5_17275001 chr2L_17275001 RAL-783 268 chr2L 17517859 17517875 chr2L 17517942 17517958 4 83 3.5 2.0 2.8 1.1 99 chr2L 17517859 intron Dhc36C + chr2L 17517908 intron Dhc36C + chr2L 17517958 intron Dhc36C + chr2L_4_17515001 chr2L_17515001 RAL-783 269 chr2L 17819920 17819956 chr2L 17825123 17825158 copia 5 5203 0.5 3.0 1.8 1.8 5238 chr2L 17819920 intron CadN2 - chr2L 17822539 intron CadN2 - chr2L 17825158 intron CadN2 - chr2L_5_17820001 chr2L_17820001 RAL-783 270 chr2L 17877036 17877057 chr2L 17877187 17877209 5 152 0.5 2.0 1.2 2.3 173 chr2L 17877036 intergenic not near genes chr2L 17877122 intergenic not near genes chr2L 17877209 intergenic not near genes chr2L_5_17875001 chr2L_17875001 RAL-783 271 chr2L 17911960 17911985 chr2L 17914146 17914171 pogo 9 2185 3.5 3.0 3.2 2.1 2211 chr2L 17911960 intergenic not near genes chr2L 17913066 intergenic not near genes chr2L 17914171 intergenic CG43271 - chr2L_9_17910001 chr2L_17910001 RAL-783 272 chr2L 17941853 17941871 chr2L 17941936 17941955 5 84 1.0 2.0 1.5 2.0 102 chr2L 17941853 intergenic not near genes chr2L 17941904 intergenic not near genes chr2L 17941955 intergenic not near genes chr2L_5_17940001 chr2L_17940001 RAL-783 273 chr2L 18051874 18051902 chr2L 18061020 18061048 roo 8 9146 5.5 2.0 3.8 1.7 9174 chr2L 18051874 intron rdo + chr2L 18056461 intron rdo + chr2L 18061048 intron rdo + chr2L_8_18055001 chr2L_18055001 RAL-783 274 chr2L 18111242 18111264 chr2L 18111332 18111355 4 90 4.0 3.5 3.8 0.8 113 chr2L 18111242 intergenic not near genes chr2L 18111298 intergenic not near genes chr2L 18111355 intergenic not near genes chr2L_4_18110001 chr2L_18110001 RAL-783 275 chr2L 18225814 18225831 chr2L 18226430 18226461 5 626 1.5 3.5 2.5 1.4 647 chr2L 18225814 intron CG42750 - chr2L 18226138 intron CG42750 - chr2L 18226461 intron CG42750 - chr2L_5_18225001 chr2L_18225001 RAL-783 276 chr2L 18344618 18344653 chr2L 18344706 18344737 8 86 2.5 4.0 3.2 1.9 119 chr2L 18344618 intron Fas3 + chr2L 18344678 intron Fas3 + chr2L 18344737 intron Fas3 + chr2L_8_18340001 chr2L_18340001 RAL-783 277 chr2L 18408024 18408053 chr2L 18412808 18412837 Doc 7 4784 3.0 0.0 1.5 2.8 4813 chr2L 18408024 intergenic not near genes chr2L 18410430 intergenic not near genes chr2L 18412837 intergenic not near genes chr2L_7_18410001 chr2L_18410001 RAL-783 278 chr2L 18670542 18670560 chr2L 18670841 18670845 9 298 3.0 3.0 3.0 2.2 303 chr2L 18670542 intron CG43338 - chr2L 18670694 intron CG43338 - chr2L 18670845 intron CG43338 - chr2L_9_18670001 chr2L_18670001 RAL-783 279 chr2L 18790287 18790316 chr2L 18791121 18791136 10 824 19.5 17.5 18.5 0.5 849 chr2L 18790287 intron ham - chr2L 18790712 intron ham - chr2L 18791136 intron ham - chr2L_10_18790001 chr2L_18790001 RAL-783 280 chr2L 18811405 18811434 chr2L 18811487 18811516 4 82 0.0 0.0 0.0 4.0 111 chr2L 18811405 intergenic CG10570 -,CG42502 - chr2L 18811460 intergenic CG10570 -,CG42502 - chr2L 18811516 intergenic not near genes chr2L_4_18810001 chr2L_18810001 RAL-783 281 chr2L 18812556 18812580 chr2L 18812819 18812842 10 262 3.0 3.0 3.0 2.5 286 chr2L 18812556 intergenic CG17325 +,CG42305 + chr2L 18812699 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812842 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_10_18810001 chr2L_18810001 RAL-783 282 chr2L 18876868 18876879 chr2L 18876946 18876957 4 78 1.5 3.5 2.5 1.1 89 chr2L 18876868 intron tup - chr2L 18876912 intron tup - chr2L 18876957 intron tup - chr2L_4_18875001 chr2L_18875001 RAL-783 283 chr2L 18883857 18883875 chr2L 18883939 18883956 4 80 2.0 3.5 2.8 1.1 99 chr2L 18883857 intergenic not near genes chr2L 18883906 intergenic not near genes chr2L 18883956 intergenic not near genes chr2L_4_18880001 chr2L_18880001 RAL-783 284 chr2L 18886897 18886908 chr2L 18887172 18887186 4 278 1.5 2.5 2.0 1.3 289 chr2L 18886897 intergenic not near genes chr2L 18887042 intergenic not near genes chr2L 18887186 intergenic not near genes chr2L_4_18885001 chr2L_18885001 RAL-783 285 chr2L 19077300 19077309 chr2L 19078741 19078750 5 1441 2.5 1.0 1.8 1.8 1450 chr2L 19077300 3` UTR CG10700 - chr2L 19078025 exon CG10700 - chr2L 19078750 exon CG10700 - chr2L_5_19075001 chr2L_19075001 RAL-783 286 chr2L 19121044 19121072 chr2L 19121122 19121150 10 78 1.0 2.0 1.5 4.0 106 chr2L 19121044 intergenic l(2)37Cc - chr2L 19121097 intergenic l(2)37Cc - chr2L 19121150 intergenic l(2)37Cc - chr2L_10_19120001 chr2L_19120001 RAL-783 287 chr2L 19147272 19147277 chr2L 19147387 19147392 5 114 3.0 0.0 1.5 2.0 120 chr2L 19147272 intron brat + chr2L 19147332 intron brat + chr2L 19147392 intron brat + chr2L_5_19145001 chr2L_19145001 RAL-783 288 chr2L 19147388 19147398 chr2L 19154423 19154433 297 4 7034 0.0 4.5 2.2 1.2 7045 chr2L 19147388 intron brat + chr2L 19150910 intron brat + chr2L 19154433 intron brat + chr2L_4_19150001 chr2L_19150001 RAL-783 289 chr2L 19182973 19183003 chr2L 19183052 19183078 7 77 1.0 3.0 2.0 2.3 105 chr2L 19182973 intergenic CR17567 -,CG42688 - chr2L 19183026 intergenic CR17567 -,CG42688 - chr2L 19183078 3` UTR CR17567 - chr2L_7_19180001 chr2L_19180001 RAL-783 290 chr2L 19183341 19183372 chr2L 19183421 19183452 6 79 2.5 2.0 2.2 1.9 111 chr2L 19183341 intron CR17567 - chr2L 19183396 3` UTR CR17567 - chr2L 19183452 3` UTR CR17567 - chr2L_6_19180001 chr2L_19180001 RAL-783 291 chr2L 19246115 19246137 chr2L 19246196 19246209 5 76 2.0 3.5 2.8 1.3 94 chr2L 19246115 intergenic not near genes chr2L 19246162 intergenic not near genes chr2L 19246209 intergenic not near genes chr2L_5_19245001 chr2L_19245001 RAL-783 292 chr2L 19345021 19345038 chr2L 19357228 19357247 blood 6 12209 3.0 1.5 2.2 1.9 12226 chr2L 19345021 intron dnt - chr2L 19351134 intron dnt - chr2L 19357247 intron dnt - chr2L_6_19350001 chr2L_19350001 RAL-783 293 chr2L 19357553 19357565 chr2L 19357639 19357655 6 89 4.0 3.0 3.5 1.3 102 chr2L 19357553 intron dnt - chr2L 19357604 intron dnt - chr2L 19357655 intron dnt - chr2L_6_19355001 chr2L_19355001 RAL-783 294 chr2L 19361881 19361908 chr2L 19361968 19361994 9 87 3.0 5.5 4.2 1.7 113 chr2L 19361881 intron dnt - chr2L 19361938 intron dnt - chr2L 19361994 intron dnt - chr2L_9_19360001 chr2L_19360001 RAL-783 295 chr2L 19544590 19544620 chr2L 19544667 19544697 6 75 3.0 5.5 4.2 1.2 107 chr2L 19544590 exon ref(2)P + chr2L 19544644 exon ref(2)P + chr2L 19544697 exon ref(2)P + chr2L_6_19540001 chr2L_19540001 RAL-783 296 chr2L 19544624 19544626 chr2L 19544664 19544703 5 60 3.0 3.5 3.2 1.2 79 chr2L 19544624 exon ref(2)P + chr2L 19544664 exon ref(2)P + chr2L 19544703 exon ref(2)P + chr2L_5_19540001 chr2L_19540001 RAL-783 297 chr2L 19562543 19562562 chr2L 19562623 19562642 8 79 0.0 3.0 1.5 3.2 99 chr2L 19562543 intron Tep5 + chr2L 19562592 intron Tep5 + chr2L 19562642 exon Tep5 + chr2L_8_19560001 chr2L_19560001 RAL-783 298 chr2L 19620104 19620132 chr2L 19621082 19621121 jockey 8 983 4.0 2.0 3.0 2.0 1017 chr2L 19620104 intron Lar + chr2L 19620612 intron Lar + chr2L 19621121 intron Lar + chr2L_8_19620001 chr2L_19620001 RAL-783 299 chr2L 19652571 19652599 chr2L 19674004 19674033 opus 6 21434 1.5 4.0 2.8 1.6 21462 chr2L 19652571 intron Lar + chr2L 19663302 intron Lar + chr2L 19674033 intron Lar + chr2L_6_19660001 chr2L_19660001 RAL-783 300 chr2L 19703539 19703567 chr2L 19712675 19712703 roo 5 9136 5.0 4.0 4.5 0.9 9164 chr2L 19703539 intron Lar + chr2L 19708121 intron Lar + chr2L 19712703 intron Lar + chr2L_5_19705001 chr2L_19705001 RAL-783 301 chr2L 19742083 19742093 chr2L 19742165 19742175 4 82 6.5 2.5 4.5 0.7 92 chr2L 19742083 intergenic not near genes chr2L 19742129 intergenic not near genes chr2L 19742175 intergenic not near genes chr2L_4_19740001 chr2L_19740001 RAL-783 302 chr2L 19762809 19762837 chr2L 19763051 19763078 pogo 4 242 3.0 2.0 2.5 1.1 269 chr2L 19762809 5` UTR fbp - chr2L 19762944 intron fbp - chr2L 19763078 intron fbp - chr2L_4_19760001 chr2L_19760001 RAL-783 303 chr2L 19791159 19791172 chr2L 19791246 19791256 5 85 5.0 9.0 7.0 0.6 97 chr2L 19791159 intron CdGAPr - chr2L 19791208 intron CdGAPr - chr2L 19791256 intron CdGAPr - chr2L_5_19790001 chr2L_19790001 RAL-783 304 chr2L 19794020 19794046 chr2L 19794103 19794127 5 83 2.5 4.0 3.2 1.2 107 chr2L 19794020 intron fs(2)ltoPP43 - chr2L 19794074 intron fs(2)ltoPP43 - chr2L 19794127 intron fs(2)ltoPP43 - chr2L_5_19790001 chr2L_19790001 RAL-783 305 chr2L 19856392 19856426 chr2L 19856636 19856671 13 243 1.5 3.0 2.2 4.1 279 chr2L 19856392 intron sick + chr2L 19856532 intron sick + chr2L 19856671 intron sick + chr2L_13_19855001 chr2L_19855001 RAL-783 306 chr2L 19871553 19871572 chr2L 19871640 19871659 7 86 0.0 3.5 1.8 2.5 106 chr2L 19871553 intron sick + chr2L 19871606 intron sick + chr2L 19871659 intron sick + chr2L_7_19870001 chr2L_19870001 RAL-783 307 chr2L 19972929 19972964 chr2L 19973017 19973051 9 88 2.5 2.0 2.2 2.8 122 chr2L 19972929 intron CG43861 - chr2L 19972990 intron CG43861 - chr2L 19973051 intron CG43861 - chr2L_9_19970001 chr2L_19970001 RAL-783 308 chr2L 20005872 20005905 chr2L 20010948 20010981 flea 7 5075 0.0 2.0 1.0 3.5 5109 chr2L 20005872 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20010981 intron CG43861 - chr2L_7_20005001 chr2L_20005001 RAL-783 309 chr2L 20036536 20036554 chr2L 20036619 20036637 6 84 1.5 1.0 1.2 2.7 101 chr2L 20036536 intron sNPF + chr2L 20036586 intron sNPF + chr2L 20036637 intron sNPF + chr2L_6_20035001 chr2L_20035001 RAL-783 310 chr2L 20041449 20041461 chr2L 20041533 20041544 4 81 4.5 9.5 7.0 0.5 95 chr2L 20041449 intron sNPF + chr2L 20041496 intron sNPF + chr2L 20041544 intron sNPF + chr2L_4_20040001 chr2L_20040001 RAL-783 311 chr2L 20046559 20046584 chr2L 20046648 20046652 4 84 4.0 3.0 3.5 0.9 93 chr2L 20046559 intron sNPF + chr2L 20046606 intron sNPF + chr2L 20046652 intron sNPF + chr2L_4_20045001 chr2L_20045001 RAL-783 312 chr2L 20079519 20079546 chr2L 20079639 20079667 5 121 1.5 0.0 0.8 2.8 148 chr2L 20079519 intron,intron neb +,fok - chr2L 20079593 intron,intron neb +,fok - chr2L 20079667 intron,intron neb +,fok - chr2L_5_20075001 chr2L_20075001 RAL-783 313 chr2L 20085465 20085496 chr2L 20085557 20085588 10 91 4.0 4.5 4.2 1.9 123 chr2L 20085465 intron neb + chr2L 20085526 intron neb + chr2L 20085588 intron neb + chr2L_10_20085001 chr2L_20085001 RAL-783 314 chr2L 20127490 20127512 chr2L 20127715 20127737 6 226 2.0 3.0 2.5 1.7 247 chr2L 20127490 intergenic not near genes chr2L 20127614 intergenic not near genes chr2L 20127737 intergenic not near genes chr2L_6_20125001 chr2L_20125001 RAL-783 315 chr2L 20272112 20272143 chr2L 20282823 20282854 copia 6 10710 1.5 3.0 2.2 1.9 10742 chr2L 20272112 intergenic not near genes chr2L 20277483 intergenic not near genes chr2L 20282854 intergenic not near genes chr2L_6_20275001 chr2L_20275001 RAL-783 316 chr2L 20310886 20310921 chr2L 20310966 20310999 6 79 0.0 0.5 0.2 5.0 113 chr2L 20310886 intergenic spir + chr2L 20310942 intergenic spir + chr2L 20310999 intergenic spir + chr2L_6_20310001 chr2L_20310001 RAL-783 317 chr2L 20376075 20376095 chr2L 20376194 20376213 6 118 2.0 2.5 2.2 1.9 138 chr2L 20376075 intergenic not near genes chr2L 20376144 intergenic not near genes chr2L 20376213 intergenic not near genes chr2L_6_20375001 chr2L_20375001 RAL-783 318 chr2L 20429674 20429682 chr2L 20429788 20429796 4 113 3.0 2.5 2.8 1.1 122 chr2L 20429674 intron CG31688 + chr2L 20429735 intron CG31688 + chr2L 20429796 intron CG31688 + chr2L_4_20425001 chr2L_20425001 RAL-783 319 chr2L 20498693 20498706 chr2L 20498791 20498799 4 96 4.0 3.0 3.5 0.9 106 chr2L 20498693 intergenic not near genes chr2L 20498746 intergenic not near genes chr2L 20498799 intergenic not near genes chr2L_4_20495001 chr2L_20495001 RAL-783 320 chr2L 20552805 20552819 chr2L 20553040 20553057 6 237 1.5 2.5 2.0 2.0 252 chr2L 20552805 intergenic not near genes chr2L 20552931 intergenic not near genes chr2L 20553057 intergenic not near genes chr2L_6_20550001 chr2L_20550001 RAL-783 321 chr2L 20576219 20576252 chr2L 20583687 20583720 blood 8 7465 4.0 2.5 3.2 1.9 7501 chr2L 20576219 intergenic CR45347 + chr2L 20579970 intergenic not near genes chr2L 20583720 3` UTR CR44909 - chr2L_8_20575001 chr2L_20575001 RAL-783 322 chr2L 20597106 20597119 chr2L 20597165 20597176 7 65 2.5 5.5 4.0 1.4 70 chr2L 20597106 intron CR44909 - chr2L 20597141 intron CR44909 - chr2L 20597176 intron CR44909 - chr2L_7_20595001 chr2L_20595001 RAL-783 323 chr2L 20611235 20611264 chr2L 20611322 20611353 6 88 1.0 3.5 2.2 1.9 118 chr2L 20611235 intron CR44909 - chr2L 20611294 intron CR44909 - chr2L 20611353 intron CR44909 - chr2L_6_20610001 chr2L_20610001 RAL-783 324 chr2L 20623823 20623860 chr2L 20623902 20623922 11 76 0.5 0.5 0.5 7.3 99 chr2L 20623823 intron CR44909 - chr2L 20623872 intron CR44909 - chr2L 20623922 intron CR44909 - chr2L_11_20620001 chr2L_20620001 RAL-783 325 chr2L 20668690 20668722 chr2L 20668766 20668798 5 76 2.0 1.5 1.8 1.8 108 chr2L 20668690 intron CG31678 - chr2L 20668744 intron CG31678 - chr2L 20668798 intron CG31678 - chr2L_5_20665001 chr2L_20665001 RAL-783 326 chr2L 20715145 20715175 chr2L 20715381 20715412 9 237 3.0 2.5 2.8 2.4 267 chr2L 20715145 intergenic not near genes chr2L 20715278 intergenic not near genes chr2L 20715412 intergenic not near genes chr2L_9_20715001 chr2L_20715001 RAL-783 327 chr2L 20724209 20724227 chr2L 20724296 20724315 9 88 1.0 3.0 2.0 3.0 106 chr2L 20724209 3` UTR CG9316 - chr2L 20724262 3` UTR CG9316 - chr2L 20724315 3` UTR CG9316 - chr2L_9_20720001 chr2L_20720001 RAL-783 328 chr2L 20814825 20814854 chr2L 20817522 20817551 7 2697 28.0 5.0 16.5 0.4 2726 chr2L 20814825 exon CG33322 - chr2L 20816188 5` UTR CG33322 - chr2L 20817551 intergenic CheB38a -,CheB38b - chr2L_7_20815001 chr2L_20815001 RAL-783 329 chr2L 20819115 20819136 chr2L 20819197 20819216 8 83 2.0 1.5 1.8 2.9 101 chr2L 20819115 intergenic not near genes chr2L 20819166 intergenic not near genes chr2L 20819216 intergenic not near genes chr2L_8_20815001 chr2L_20815001 RAL-783 330 chr2L 20821505 20821519 chr2L 20821653 20821667 7 146 1.5 2.0 1.8 2.5 162 chr2L 20821505 intergenic not near genes chr2L 20821586 intergenic not near genes chr2L 20821667 intergenic not near genes chr2L_7_20820001 chr2L_20820001 RAL-783 331 chr2L 20901480 20901489 chr2L 20902618 20902653 1360 5 1155 0.0 3.0 1.5 2.0 1173 chr2L 20901480 intron,intron CG43739 -,sky - chr2L 20902066 intron,intron CG43739 -,sky - chr2L 20902653 intron,intron CG43739 -,sky - chr2L_5_20900001 chr2L_20900001 RAL-783 332 chr2L 20967084 20967103 chr2L 20967170 20967189 6 86 2.5 3.5 3.0 1.5 105 chr2L 20967084 3` UTR CG42238 - chr2L 20967136 3` UTR CG42238 - chr2L 20967189 3` UTR CG42238 - chr2L_6_20965001 chr2L_20965001 RAL-783 333 chr2L 20976664 20976671 chr2L 20981478 20981486 X-element 4 4815 1.5 3.0 2.2 1.2 4822 chr2L 20976664 intron CG42238 - chr2L 20979075 intron CG42238 - chr2L 20981486 intron CG42238 - chr2L_4_20975001 chr2L_20975001 RAL-783 334 chr2L 21020274 21020311 chr2L 21023951 21023975 NOF 8 3675 4.0 5.5 4.8 1.4 3701 chr2L 21020274 intron CG42238 - chr2L 21022124 intron CG42238 - chr2L 21023975 intron CG42238 - chr2L_8_21020001 chr2L_21020001 RAL-783 335 chr2L 21041135 21041168 chr2L 21049396 21049428 Tirant 7 8261 3.0 1.0 2.0 2.3 8293 chr2L 21041135 intron CG42238 - chr2L 21045282 intron CG42238 - chr2L 21049428 intron CG42238 - chr2L_7_21045001 chr2L_21045001 RAL-783 336 chr2L 21074919 21074949 chr2L 21075010 21075039 6 91 1.5 0.0 0.8 3.3 120 chr2L 21074919 intergenic tadr + chr2L 21074979 intergenic tadr + chr2L 21075039 intergenic tadr + chr2L_6_21070001 chr2L_21070001 RAL-783 337 chr2L 21597036 21597058 chr2L 21604780 21604799 roo 4 7743 2.5 3.5 3.0 1.0 7763 chr2L 21597036 intergenic not near genes chr2L 21600918 intergenic not near genes chr2L 21604799 intergenic not near genes chr2L_4_21600001 chr2L_21600001 RAL-783 338 chr2L 21691833 21691857 chr2L 21698302 21698327 Burdock 4 6467 2.0 0.0 1.0 2.0 6494 chr2L 21691833 intron CG31619 + chr2L 21695080 intron CG31619 + chr2L 21698327 intron CG31619 + chr2L_4_21695001 chr2L_21695001 RAL-783 339 chr2L 21751137 21751158 chr2L 21751892 21751913 INE-1 7 755 4.5 1.5 3.0 1.8 776 chr2L 21751137 intron step - chr2L 21751525 intron step - chr2L 21751913 intron step - chr2L_7_21750001 chr2L_21750001 RAL-783 340 chr2L 21754664 21754679 chr2L 21754745 21754760 4 81 1.5 2.0 1.8 1.4 96 chr2L 21754664 intron step - chr2L 21754712 intron step - chr2L 21754760 intron step - chr2L_4_21750001 chr2L_21750001 RAL-783 341 chr2L 21755500 21755515 chr2L 21755623 21755638 4 120 3.0 1.5 2.2 1.2 138 chr2L 21755500 intron step - chr2L 21755569 intron step - chr2L 21755638 intron step - chr2L_4_21755001 chr2L_21755001 RAL-783 342 chr2L 21781877 21781891 chr2L 21781952 21781979 7 87 2.0 3.5 2.8 1.8 102 chr2L 21781877 intron CG31612 - chr2L 21781928 intron CG31612 - chr2L 21781979 intron CG31612 - chr2L_7_21780001 chr2L_21780001 RAL-783 343 chr2L 21806224 21806253 chr2L 21806327 21806355 4 99 1.0 0.5 0.8 2.2 131 chr2L 21806224 intergenic not near genes chr2L 21806290 intergenic not near genes chr2L 21806355 intergenic not near genes chr2L_4_21805001 chr2L_21805001 RAL-783 344 chr2L 21809012 21809043 chr2L 21809218 21809233 7 202 4.5 0.5 2.5 2.0 221 chr2L 21809012 intergenic not near genes chr2L 21809122 intergenic not near genes chr2L 21809233 intergenic not near genes chr2L_7_21805001 chr2L_21805001 RAL-783 345 chr2L 21981683 21981710 chr2L 21990848 21990874 roo 4 9165 2.0 1.0 1.5 1.6 9191 chr2L 21981683 exon CG2528 - chr2L 21986278 intron CG2528 - chr2L 21990874 exon CG2528 - chr2L_4_21985001 chr2L_21985001 RAL-783 346 chr2L 22097112 22097130 chr2L 22097205 22097223 4 92 3.0 4.0 3.5 0.9 111 chr2L 22097112 intergenic not near genes chr2L 22097168 intergenic not near genes chr2L 22097223 intergenic not near genes chr2L_4_22095001 chr2L_22095001 RAL-783 347 chr2L 22179540 22179576 chr2L 22179617 22179653 8 76 3.5 2.5 3.0 2.0 113 chr2L 22179540 intron CG3635 + chr2L 22179596 intron CG3635 + chr2L 22179653 intron CG3635 + chr2L_8_22175001 chr2L_22175001 RAL-783 348 chr2L 22256842 22256868 chr2L 22256931 22256957 4 89 2.5 3.5 3.0 1.0 115 chr2L 22256842 intron Tif-IA + chr2L 22256900 intron Tif-IA + chr2L 22256957 intron Tif-IA + chr2L_4_22255001 chr2L_22255001 RAL-783 349 chr2L 22548924 22548945 chr2L 22550149 22550170 1360 7 1223 0.0 4.5 2.2 2.2 1246 chr2L 22548924 intergenic CG17490 + chr2L 22549547 intergenic not near genes chr2L 22550170 intergenic CG17493 + chr2L_7_22545001 chr2L_22545001 RAL-783 350 chr2L 23181401 23181420 chr2L 23181509 23181509 5 105 1.0 1.5 1.2 2.3 108 chr2L 23181401 intergenic not near genes chr2L 23181455 intergenic not near genes chr2L 23181509 intergenic not near genes chr2L_5_23180001 chr2L_23180001 RAL-783 351 chr2R 469967 469979 chr2R 473206 473220 F-element 4 3240 1.0 2.0 1.5 1.6 3253 chr2R 469967 intergenic not near genes chr2R 471594 intergenic not near genes chr2R 473220 intergenic not near genes chr2R_4_470001 chr2R_470001 RAL-783 352 chr2R 529322 529348 chr2R 537946 537973 Max-element 5 8625 1.5 1.0 1.2 2.3 8651 chr2R 529322 intron CG40378 + chr2R 533648 intron CG40378 + chr2R 537973 intron CG40378 + chr2R_5_530001 chr2R_530001 RAL-783 353 chr2R 1082380 1082385 chr2R 1087129 1087161 Doc 8 4760 4.5 5.0 4.8 1.4 4781 chr2R 1082380 intron rl + chr2R 1084770 intron rl + chr2R 1087161 intron rl + chr2R_8_1080001 chr2R_1080001 RAL-783 354 chr2R 2591545 2591558 chr2R 2594221 2594233 roo 4 2676 14.0 8.5 11.2 0.3 2688 chr2R 2591545 intergenic not near genes chr2R 2592889 intergenic not near genes chr2R 2594233 intergenic not near genes chr2R_4_2590001 chr2R_2590001 RAL-783 355 chr2R 3144091 3144106 chr2R 3393369 3393384 Doc 4 249278 13.0 10.5 11.8 0.3 249293 chr2R 3144091 intron CG42596 + chr2R 3268738 intergenic not near genes chr2R 3393384 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-783 356 chr2R 3291928 3291957 chr2R 3915097 3915126 6 623168 14.0 19.5 16.8 0.3 623198 chr2R 3291928 intergenic not near genes chr2R 3603527 intergenic not near genes chr2R 3915126 intron uex - chr2R_6_3600001 chr2R_3600001 RAL-783 357 chr2R 4312955 4312986 chr2R 4313038 4313070 9 83 0.5 1.5 1.0 4.5 115 chr2R 4312955 intergenic not near genes chr2R 4313012 intergenic not near genes chr2R 4313070 intergenic not near genes chr2R_9_4310001 chr2R_4310001 RAL-783 358 chr2R 4603339 4603371 chr2R 4603421 4603452 8 80 3.0 3.5 3.2 1.9 113 chr2R 4603339 intron p120ctn + chr2R 4603396 intron p120ctn + chr2R 4603452 intron p120ctn + chr2R_8_4600001 chr2R_4600001 RAL-783 359 chr2R 4621322 4621343 chr2R 4621860 4621882 6 538 4.0 3.5 3.8 1.2 560 chr2R 4621322 3` UTR CR44101 - chr2R 4621602 3` UTR CR44101 - chr2R 4621882 3` UTR CR44101 - chr2R_6_4620001 chr2R_4620001 RAL-783 360 chr2R 4622955 4622982 chr2R 4624114 4624141 1360 7 1157 6.5 5.0 5.8 1.0 1186 chr2R 4622955 intergenic CR44101 - chr2R 4623548 intergenic not near genes chr2R 4624141 intergenic not near genes chr2R_7_4620001 chr2R_4620001 RAL-783 361 chr2R 4624644 4624659 chr2R 4626549 4626563 Bica 6 1905 6.0 4.0 5.0 1.0 1919 chr2R 4624644 intergenic not near genes chr2R 4625604 intergenic not near genes chr2R 4626563 intergenic not near genes chr2R_6_4625001 chr2R_4625001 RAL-783 362 chr2R 4781721 4781747 chr2R 4781835 4781862 8 115 4.5 2.5 3.5 1.8 141 chr2R 4781721 intergenic not near genes chr2R 4781792 intergenic not near genes chr2R 4781862 intergenic not near genes chr2R_8_4780001 chr2R_4780001 RAL-783 363 chr2R 4783419 4783450 chr2R 4783497 4783526 10 77 3.5 2.0 2.8 2.6 107 chr2R 4783419 intergenic not near genes chr2R 4783472 intergenic not near genes chr2R 4783526 intergenic not near genes chr2R_10_4780001 chr2R_4780001 RAL-783 364 chr2R 4908919 4908940 chr2R 4909002 4909028 6 87 2.0 4.5 3.2 1.4 109 chr2R 4908919 intergenic not near genes chr2R 4908974 intergenic not near genes chr2R 4909028 intergenic not near genes chr2R_6_4905001 chr2R_4905001 RAL-783 365 chr2R 4955042 4955047 chr2R 4955391 4955399 5 351 2.0 2.0 2.0 1.7 357 chr2R 4955042 intron Ir41a + chr2R 4955220 intron Ir41a + chr2R 4955399 intron Ir41a + chr2R_5_4955001 chr2R_4955001 RAL-783 366 chr2R 4957014 4957043 chr2R 4957117 4957145 6 102 2.0 1.5 1.8 2.1 131 chr2R 4957014 intron Ir41a + chr2R 4957080 intron Ir41a + chr2R 4957145 intron Ir41a + chr2R_6_4955001 chr2R_4955001 RAL-783 367 chr2R 5103047 5103073 chr2R 5103128 5103155 8 79 2.0 3.0 2.5 2.3 108 chr2R 5103047 intergenic not near genes chr2R 5103101 intergenic not near genes chr2R 5103155 intergenic not near genes chr2R_8_5100001 chr2R_5100001 RAL-783 368 chr2R 5125249 5125276 chr2R 5125566 5125594 8 316 1.5 0.0 0.8 4.4 345 chr2R 5125249 intron gus - chr2R 5125422 intron gus - chr2R 5125594 intron gus - chr2R_8_5125001 chr2R_5125001 RAL-783 369 chr2R 5396258 5396289 chr2R 5396496 5396527 6 238 12.5 15.0 13.8 0.4 269 chr2R 5396258 intergenic not near genes chr2R 5396392 intergenic not near genes chr2R 5396527 intergenic not near genes chr2R_6_5395001 chr2R_5395001 RAL-783 370 chr2R 5473366 5473395 chr2R 5473461 5473490 4 95 0.5 4.0 2.2 1.2 124 chr2R 5473366 intron CG30440 - chr2R 5473428 intron CG30440 - chr2R 5473490 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-783 371 chr2R 5581397 5581425 chr2R 5627606 5627634 12 46209 0.5 6.5 3.5 2.7 46237 chr2R 5581397 intergenic not near genes chr2R 5604516 exon Fis1 - chr2R 5627634 intergenic not near genes chr2R_12_5600001 chr2R_5600001 RAL-783 372 chr2R 5782953 5782973 chr2R 5783034 5783057 4 83 0.0 2.5 1.2 1.8 104 chr2R 5782953 intergenic ZnT41F - chr2R 5783005 intergenic ZnT41F - chr2R 5783057 intergenic ZnT41F - chr2R_4_5780001 chr2R_5780001 RAL-783 373 chr2R 5869277 5869291 chr2R 5874352 5874367 flea 6 5076 6.0 4.0 5.0 1.0 5090 chr2R 5869277 intergenic not near genes chr2R 5871822 intergenic not near genes chr2R 5874367 intergenic not near genes chr2R_6_5870001 chr2R_5870001 RAL-783 374 chr2R 5878926 5878944 chr2R 5879006 5879024 4 79 2.0 2.0 2.0 1.3 98 chr2R 5878926 intergenic CG44438 - chr2R 5878975 intergenic CG44438 - chr2R 5879024 intergenic CG44438 - chr2R_4_5875001 chr2R_5875001 RAL-783 375 chr2R 6096720 6096743 chr2R 6101916 6101937 BS 7 5194 4.0 6.0 5.0 1.2 5217 chr2R 6096720 intron EcR - chr2R 6099328 intron EcR - chr2R 6101937 intron EcR - chr2R_7_6095001 chr2R_6095001 RAL-783 376 chr2R 6129328 6129355 chr2R 6129405 6129432 7 77 2.0 2.5 2.2 2.2 104 chr2R 6129328 intron EcR - chr2R 6129380 intron EcR - chr2R 6129432 intron EcR - chr2R_7_6125001 chr2R_6125001 RAL-783 377 chr2R 6194687 6194704 chr2R 6194770 6194787 4 81 4.0 7.5 5.8 0.6 100 chr2R 6194687 intron Ptr - chr2R 6194737 intron Ptr - chr2R 6194787 intron Ptr - chr2R_4_6190001 chr2R_6190001 RAL-783 378 chr2R 6494527 6494546 chr2R 6499289 6499291 F-element 6 4758 3.0 0.0 1.5 2.4 4764 chr2R 6494527 intergenic not near genes chr2R 6496909 intergenic not near genes chr2R 6499291 intergenic not near genes chr2R_6_6495001 chr2R_6495001 RAL-783 379 chr2R 6561850 6561880 chr2R 6561936 6561947 5 81 3.0 1.5 2.2 1.6 97 chr2R 6561850 intron jing + chr2R 6561898 intron jing + chr2R 6561947 intron jing + chr2R_5_6560001 chr2R_6560001 RAL-783 380 chr2R 6579771 6579796 chr2R 6584857 6584882 flea 4 5086 2.0 2.0 2.0 1.3 5111 chr2R 6579771 intron jing + chr2R 6582326 intron jing + chr2R 6584882 intron jing + chr2R_4_6580001 chr2R_6580001 RAL-783 381 chr2R 6685881 6685888 chr2R 6685963 6685970 4 82 4.5 4.0 4.2 0.8 89 chr2R 6685881 intron,intron CG9422 +,Tdc2 - chr2R 6685926 intron,intron CG9422 +,Tdc2 - chr2R 6685970 intron,intron CG9422 +,Tdc2 - chr2R_4_6685001 chr2R_6685001 RAL-783 382 chr2R 6797080 6797104 chr2R 6797173 6797180 11 85 1.0 3.5 2.2 3.4 100 chr2R 6797080 5` UTR Epac - chr2R 6797130 5` UTR Epac - chr2R 6797180 5` UTR Epac - chr2R_11_6795001 chr2R_6795001 RAL-783 383 chr2R 6825436 6825465 chr2R 6825526 6825557 4 92 0.5 1.0 0.8 2.2 121 chr2R 6825436 intergenic not near genes chr2R 6825496 intergenic not near genes chr2R 6825557 intergenic not near genes chr2R_4_6825001 chr2R_6825001 RAL-783 384 chr2R 6861581 6861602 chr2R 6861657 6861680 9 77 2.0 2.0 2.0 3.0 99 chr2R 6861581 intergenic coro - chr2R 6861630 intergenic coro - chr2R 6861680 intergenic coro - chr2R_9_6860001 chr2R_6860001 RAL-783 385 chr2R 6870591 6870624 chr2R 6870694 6870725 5 103 1.0 1.5 1.2 2.3 134 chr2R 6870591 intron coro - chr2R 6870658 intron coro - chr2R 6870725 intron coro - chr2R_5_6870001 chr2R_6870001 RAL-783 386 chr2R 6876223 6876251 chr2R 6876305 6876333 4 82 2.0 5.0 3.5 0.9 110 chr2R 6876223 intron,intron CR44169 +,Spn42Da - chr2R 6876278 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876333 5` UTR,intron CR44169 +,Spn42Da - chr2R_4_6875001 chr2R_6875001 RAL-783 387 chr2R 6978806 6978839 chr2R 6978948 6978981 10 142 1.5 3.5 2.5 2.9 175 chr2R 6978806 intron vimar - chr2R 6978894 intron vimar - chr2R 6978981 intron vimar - chr2R_10_6975001 chr2R_6975001 RAL-783 388 chr2R 7128603 7128625 chr2R 7129405 7129427 4 802 5.0 21.0 13.0 0.3 824 chr2R 7128603 exon Cyp9b1 - chr2R 7129015 exon Cyp9b1 - chr2R 7129427 exon Cyp9b1 - chr2R_4_7125001 chr2R_7125001 RAL-783 389 chr2R 7128651 7128661 chr2R 7129536 7129571 15 891 5.0 23.5 14.2 1.0 920 chr2R 7128651 exon Cyp9b1 - chr2R 7129111 exon Cyp9b1 - chr2R 7129571 exon Cyp9b1 - chr2R_15_7125001 chr2R_7125001 RAL-783 390 chr2R 7139949 7139953 chr2R 7141436 7141445 hopper2 4 1491 1.0 5.5 3.2 1.0 1496 chr2R 7139949 intergenic not near genes chr2R 7140697 intergenic not near genes chr2R 7141445 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-783 391 chr2R 7143628 7143661 chr2R 7143736 7143770 7 109 2.0 1.0 1.5 2.8 142 chr2R 7143628 intergenic not near genes chr2R 7143699 intergenic not near genes chr2R 7143770 intergenic not near genes chr2R_7_7140001 chr2R_7140001 RAL-783 392 chr2R 7156174 7156197 chr2R 7158035 7158052 6 1856 20.0 15.5 17.8 0.3 1878 chr2R 7156174 intron pk + chr2R 7157113 intron,exon pk +,nec - chr2R 7158052 intron,exon pk +,nec - chr2R_6_7155001 chr2R_7155001 RAL-783 393 chr2R 7196566 7196593 chr2R 7201341 7201368 F-element 5 4775 3.0 0.5 1.8 1.8 4802 chr2R 7196566 intron pk + chr2R 7198967 intron pk + chr2R 7201368 intron pk + chr2R_5_7195001 chr2R_7195001 RAL-783 394 chr2R 7235819 7235848 chr2R 7240911 7240940 jockey 6 5092 3.5 1.5 2.5 1.7 5121 chr2R 7235819 intergenic not near genes chr2R 7238380 intergenic not near genes chr2R 7240940 intergenic not near genes chr2R_6_7235001 chr2R_7235001 RAL-783 395 chr2R 7371747 7371780 chr2R 7371851 7371882 7 99 0.0 2.0 1.0 3.5 135 chr2R 7371747 intron Dscam1 - chr2R 7371814 intron Dscam1 - chr2R 7371882 intron Dscam1 - chr2R_7_7370001 chr2R_7370001 RAL-783 396 chr2R 7418145 7418164 chr2R 7418223 7418241 6 78 0.5 2.5 1.5 2.4 96 chr2R 7418145 intergenic not near genes chr2R 7418193 intergenic not near genes chr2R 7418241 intergenic not near genes chr2R_6_7415001 chr2R_7415001 RAL-783 397 chr2R 7434896 7434917 chr2R 7439197 7439218 Juan 4 4301 1.0 1.5 1.2 1.8 4322 chr2R 7434896 intergenic so + chr2R 7437057 intergenic not near genes chr2R 7439218 intergenic not near genes chr2R_4_7435001 chr2R_7435001 RAL-783 398 chr2R 7723962 7723991 chr2R 7724043 7724072 5 81 0.5 1.5 1.0 2.5 110 chr2R 7723962 intron CG18812 - chr2R 7724017 intron CG18812 - chr2R 7724072 intron CG18812 - chr2R_5_7720001 chr2R_7720001 RAL-783 399 chr2R 7743486 7743515 chr2R 7743567 7743595 11 81 1.0 5.0 3.0 2.8 109 chr2R 7743486 intron,intron CG30497 -,CG45093 - chr2R 7743540 intron,intron CG30497 -,CG45093 - chr2R 7743595 intron,intron CG30497 -,CG45093 - chr2R_11_7740001 chr2R_7740001 RAL-783 400 chr2R 7760287 7760297 chr2R 7760423 7760434 6 135 2.0 5.5 3.8 1.2 147 chr2R 7760287 intron,intron CG30497 -,CG45093 - chr2R 7760360 intron,intron CG30497 -,CG45093 - chr2R 7760434 intron,intron CG30497 -,CG45093 - chr2R_6_7760001 chr2R_7760001 RAL-783 401 chr2R 7815671 7815695 chr2R 7822139 7822164 Burdock 7 6469 3.0 2.5 2.8 1.8 6493 chr2R 7815671 intergenic CG1882 + chr2R 7818918 intergenic not near genes chr2R 7822164 3` UTR cathD - chr2R_7_7815001 chr2R_7815001 RAL-783 402 chr2R 7869190 7869215 chr2R 7873976 7874001 Doc 7 4784 5.0 4.0 4.5 1.3 4811 chr2R 7869190 intron Dgk - chr2R 7871596 intron Dgk - chr2R 7874001 intron Dgk - chr2R_7_7870001 chr2R_7870001 RAL-783 403 chr2R 7878654 7878674 chr2R 7878973 7878993 6 319 4.0 2.0 3.0 1.5 339 chr2R 7878654 intron Dgk - chr2R 7878824 intron Dgk - chr2R 7878993 intron Dgk - chr2R_6_7875001 chr2R_7875001 RAL-783 404 chr2R 8277634 8277668 chr2R 8277729 8277763 13 92 3.0 3.0 3.0 3.2 129 chr2R 8277634 5` UTR CR44280 + chr2R 8277698 5` UTR CR44280 + chr2R 8277763 5` UTR CR44280 + chr2R_13_8275001 chr2R_8275001 RAL-783 405 chr2R 8330861 8330887 chr2R 8331347 8331373 roo 7 486 3.0 1.5 2.2 2.2 512 chr2R 8330861 intron pdm3 + chr2R 8331117 intron pdm3 + chr2R 8331373 intron pdm3 + chr2R_7_8330001 chr2R_8330001 RAL-783 406 chr2R 8338645 8338660 chr2R 8338727 8338742 5 82 0.0 1.0 0.5 3.3 97 chr2R 8338645 intron pdm3 + chr2R 8338694 intron pdm3 + chr2R 8338742 intron pdm3 + chr2R_5_8335001 chr2R_8335001 RAL-783 407 chr2R 8483962 8483992 chr2R 8484038 8484046 4 68 0.5 2.0 1.2 1.8 84 chr2R 8483962 intron mtt - chr2R 8484004 intron mtt - chr2R 8484046 intron mtt - chr2R_4_8480001 chr2R_8480001 RAL-783 408 chr2R 8500887 8500913 chr2R 8501118 8501144 10 231 12.0 12.5 12.2 0.8 257 chr2R 8500887 intron mtt - chr2R 8501016 intron mtt - chr2R 8501144 intron mtt - chr2R_10_8500001 chr2R_8500001 RAL-783 409 chr2R 8508767 8508791 chr2R 8508850 8508873 5 81 1.5 6.0 3.8 1.0 106 chr2R 8508767 intron mtt - chr2R 8508820 intron mtt - chr2R 8508873 intron mtt - chr2R_5_8505001 chr2R_8505001 RAL-783 410 chr2R 8530210 8530241 chr2R 8530325 8530356 8 111 0.5 2.5 1.5 3.2 146 chr2R 8530210 intron mtt - chr2R 8530283 intron mtt - chr2R 8530356 intron mtt - chr2R_8_8530001 chr2R_8530001 RAL-783 411 chr2R 8537852 8537881 chr2R 8540401 8540430 8 2548 5.0 2.0 3.5 1.8 2578 chr2R 8537852 intergenic not near genes chr2R 8539141 intergenic not near genes chr2R 8540430 intergenic not near genes chr2R_8_8535001 chr2R_8535001 RAL-783 412 chr2R 8554128 8554136 chr2R 8554211 8554219 5 83 4.5 7.0 5.8 0.7 91 chr2R 8554128 intergenic not near genes chr2R 8554174 intergenic not near genes chr2R 8554219 intergenic not near genes chr2R_5_8550001 chr2R_8550001 RAL-783 413 chr2R 8566033 8566063 chr2R 8566985 8567015 1360 10 952 3.5 2.0 2.8 2.6 982 chr2R 8566033 5` UTR Cyp6a14 - chr2R 8566524 5` UTR Cyp6a14 - chr2R 8567015 5` UTR Cyp6a14 - chr2R_10_8565001 chr2R_8565001 RAL-783 414 chr2R 8637105 8637121 chr2R 8637186 8637202 8 82 2.5 4.5 3.5 1.8 97 chr2R 8637105 intergenic not near genes chr2R 8637154 intergenic not near genes chr2R 8637202 intergenic not near genes chr2R_8_8635001 chr2R_8635001 RAL-783 415 chr2R 8714705 8714720 chr2R 8714791 8714807 7 86 0.0 5.5 2.8 1.8 102 chr2R 8714705 3` UTR PGRP-SC1b + chr2R 8714756 3` UTR PGRP-SC1b + chr2R 8714807 3` UTR PGRP-SC1b + chr2R_7_8710001 chr2R_8710001 RAL-783 416 chr2R 8722763 8722788 chr2R 8723004 8723011 pogo 7 235 7.0 0.5 3.8 1.5 248 chr2R 8722763 intron CG14767 - chr2R 8722887 intron CG14767 - chr2R 8723011 intron CG14767 - chr2R_7_8720001 chr2R_8720001 RAL-783 417 chr2R 8967128 8967159 chr2R 8967218 8967249 6 90 4.0 0.5 2.2 1.9 121 chr2R 8967128 intron CG8216 - chr2R 8967188 intron CG8216 - chr2R 8967249 intron CG8216 - chr2R_6_8965001 chr2R_8965001 RAL-783 418 chr2R 9031996 9032012 chr2R 9032061 9032090 5 75 1.5 1.5 1.5 2.0 94 chr2R 9031996 intergenic not near genes chr2R 9032043 intergenic not near genes chr2R 9032090 intergenic not near genes chr2R_5_9030001 chr2R_9030001 RAL-783 419 chr2R 9110159 9110166 chr2R 9110247 9110255 4 89 0.5 5.0 2.8 1.1 96 chr2R 9110159 intergenic Pmm45A - chr2R 9110207 intergenic Pmm45A - chr2R 9110255 intergenic not near genes chr2R_4_9110001 chr2R_9110001 RAL-783 420 chr2R 9151305 9151327 chr2R 9157774 9157797 Burdock 5 6470 3.0 2.0 2.5 1.4 6492 chr2R 9151305 3` UTR CG30345 + chr2R 9154551 intergenic not near genes chr2R 9157797 intergenic CG8008 - chr2R_5_9150001 chr2R_9150001 RAL-783 421 chr2R 9212692 9212717 chr2R 9213178 9213203 roo 4 486 4.5 4.0 4.2 0.8 511 chr2R 9212692 intergenic CR45309 + chr2R 9212948 intergenic CR45309 + chr2R 9213203 5` UTR CR45309 + chr2R_4_9210001 chr2R_9210001 RAL-783 422 chr2R 9230227 9230241 chr2R 9230303 9230321 7 78 3.5 3.0 3.2 1.7 94 chr2R 9230227 intron hig - chr2R 9230274 intron hig - chr2R 9230321 exon hig - chr2R_7_9230001 chr2R_9230001 RAL-783 423 chr2R 9279006 9279041 chr2R 9279108 9279143 13 101 3.0 2.5 2.8 3.4 137 chr2R 9279006 intron Pkn - chr2R 9279074 intron Pkn - chr2R 9279143 intron Pkn - chr2R_13_9275001 chr2R_9275001 RAL-783 424 chr2R 9285095 9285112 chr2R 9285244 9285261 5 149 2.5 1.5 2.0 1.7 166 chr2R 9285095 5` UTR,5` UTR Pkn -,CR45132 + chr2R 9285178 5` UTR CR45132 + chr2R 9285261 intron CR45132 + chr2R_5_9285001 chr2R_9285001 RAL-783 425 chr2R 9368126 9368154 chr2R 9368201 9368215 6 72 2.5 0.0 1.2 2.7 89 chr2R 9368126 intron CG13954 - chr2R 9368170 intron CG13954 - chr2R 9368215 intron CG13954 - chr2R_6_9365001 chr2R_9365001 RAL-783 426 chr2R 9510672 9510693 chr2R 9510788 9510809 7 116 1.0 4.0 2.5 2.0 137 chr2R 9510672 intron brp + chr2R 9510740 intron brp + chr2R 9510809 intron brp + chr2R_7_9510001 chr2R_9510001 RAL-783 427 chr2R 9541624 9541647 chr2R 9541701 9541724 6 77 0.0 0.5 0.2 5.0 100 chr2R 9541624 intergenic brp +,CG1888 - chr2R 9541674 intergenic brp +,CG1888 - chr2R 9541724 intergenic brp +,CG1888 - chr2R_6_9540001 chr2R_9540001 RAL-783 428 chr2R 9561830 9561849 chr2R 9561918 9561937 4 88 0.0 1.5 0.8 2.2 107 chr2R 9561830 3` UTR,intron CR45281 -,CG1809 + chr2R 9561884 3` UTR,intron CR45281 -,CG1809 + chr2R 9561937 3` UTR,intron CR45281 -,CG1809 + chr2R_4_9560001 chr2R_9560001 RAL-783 429 chr2R 9726610 9726632 chr2R 9734161 9734183 17.6 4 7551 3.0 1.0 2.0 1.3 7573 chr2R 9726610 intron sqa - chr2R 9730396 intron sqa - chr2R 9734183 intron sqa - chr2R_4_9730001 chr2R_9730001 RAL-783 430 chr2R 9830284 9830294 chr2R 9830366 9830376 4 82 2.0 5.0 3.5 0.9 92 chr2R 9830284 intron hebe - chr2R 9830330 intron hebe - chr2R 9830376 intron hebe - chr2R_4_9830001 chr2R_9830001 RAL-783 431 chr2R 9871051 9871067 chr2R 9871537 9871553 roo 4 484 2.5 4.5 3.5 0.9 502 chr2R 9871051 intron cbx - chr2R 9871302 intron cbx - chr2R 9871553 intron,5` UTR cbx -,CG18446 + chr2R_4_9870001 chr2R_9870001 RAL-783 432 chr2R 9928419 9928447 chr2R 9928542 9928572 7 124 2.0 1.5 1.8 2.5 153 chr2R 9928419 intron Mef2 - chr2R 9928496 intron Mef2 - chr2R 9928572 intron Mef2 - chr2R_7_9925001 chr2R_9925001 RAL-783 433 chr2R 9935032 9935053 chr2R 9935114 9935135 6 82 4.5 0.0 2.2 1.9 103 chr2R 9935032 intron Mef2 - chr2R 9935084 intron Mef2 - chr2R 9935135 intron Mef2 - chr2R_6_9935001 chr2R_9935001 RAL-783 434 chr2R 9945438 9945473 chr2R 9945634 9945668 BS 4 196 0.5 2.0 1.2 1.8 230 chr2R 9945438 intron Mef2 - chr2R 9945553 intron Mef2 - chr2R 9945668 intron Mef2 - chr2R_4_9945001 chr2R_9945001 RAL-783 435 chr2R 9948383 9948413 chr2R 9948455 9948488 9 74 2.5 4.5 3.5 2.0 105 chr2R 9948383 intron Mef2 - chr2R 9948436 intron Mef2 - chr2R 9948488 intron Mef2 - chr2R_9_9945001 chr2R_9945001 RAL-783 436 chr2R 9956058 9956097 chr2R 9956135 9956174 8 77 5.0 2.5 3.8 1.7 116 chr2R 9956058 intron Mef2 - chr2R 9956116 intron Mef2 - chr2R 9956174 intron Mef2 - chr2R_8_9955001 chr2R_9955001 RAL-783 437 chr2R 10005846 10005884 chr2R 10007011 10007039 1360 15 1161 3.0 4.5 3.8 3.1 1193 chr2R 10005846 intron Pka-R2 - chr2R 10006442 intron Pka-R2 - chr2R 10007039 intron Pka-R2 - chr2R_15_10005001 chr2R_10005001 RAL-783 438 chr2R 10167109 10167142 chr2R 10167185 10167218 6 74 3.0 4.0 3.5 1.3 109 chr2R 10167109 intron KCNQ - chr2R 10167164 intron KCNQ - chr2R 10167218 intron KCNQ - chr2R_6_10165001 chr2R_10165001 RAL-783 439 chr2R 10172638 10172661 chr2R 10172746 10172773 5 111 0.0 0.0 0.0 5.0 135 chr2R 10172638 intron KCNQ - chr2R 10172706 intron KCNQ - chr2R 10172773 intron KCNQ - chr2R_5_10170001 chr2R_10170001 RAL-783 440 chr2R 10216196 10216213 chr2R 10216274 10216291 6 78 2.5 2.5 2.5 1.7 95 chr2R 10216196 intron,intron CG12912 -,Hr46 - chr2R 10216244 intron,intron CG12912 -,Hr46 - chr2R 10216291 intron,intron CG12912 -,Hr46 - chr2R_6_10215001 chr2R_10215001 RAL-783 441 chr2R 10300647 10300664 chr2R 10300742 10300760 6 96 4.5 0.0 2.2 1.9 113 chr2R 10300647 intron CAP + chr2R 10300704 intron CAP + chr2R 10300760 intron CAP + chr2R_6_10300001 chr2R_10300001 RAL-783 442 chr2R 10318517 10318544 chr2R 10318603 10318630 12 86 0.5 1.0 0.8 6.7 113 chr2R 10318517 intron Ndg + chr2R 10318574 intron Ndg + chr2R 10318630 intron Ndg + chr2R_12_10315001 chr2R_10315001 RAL-783 443 chr2R 10429024 10429032 chr2R 10429099 10429104 5 75 4.0 3.0 3.5 1.1 80 chr2R 10429024 intergenic not near genes chr2R 10429064 intergenic not near genes chr2R 10429104 intergenic not near genes chr2R_5_10425001 chr2R_10425001 RAL-783 444 chr2R 10429036 10429041 chr2R 10429097 10429109 4 71 4.0 3.0 3.5 0.9 73 chr2R 10429036 intergenic not near genes chr2R 10429072 intergenic not near genes chr2R 10429109 intergenic not near genes chr2R_4_10425001 chr2R_10425001 RAL-783 445 chr2R 10469029 10469052 chr2R 10469155 10469178 7 126 4.5 2.5 3.5 1.6 149 chr2R 10469029 intron CG11777 + chr2R 10469104 intron CG11777 + chr2R 10469178 intron CG11777 + chr2R_7_10465001 chr2R_10465001 RAL-783 446 chr2R 10492329 10492351 chr2R 10492413 10492439 6 82 2.0 3.5 2.8 1.6 110 chr2R 10492329 intron lola - chr2R 10492384 intron lola - chr2R 10492439 intron lola - chr2R_6_10490001 chr2R_10490001 RAL-783 447 chr2R 10582114 10582140 chr2R 10582209 10582234 6 95 0.5 0.0 0.2 5.0 120 chr2R 10582114 intron psq + chr2R 10582174 intron psq + chr2R 10582234 intron psq + chr2R_6_10580001 chr2R_10580001 RAL-783 448 chr2R 10622352 10622380 chr2R 10637117 10637145 mdg1 4 14764 1.5 1.0 1.2 1.8 14793 chr2R 10622352 intron CG11883 + chr2R 10629748 intron CG11883 + chr2R 10637145 intron CG11883 + chr2R_4_10625001 chr2R_10625001 RAL-783 449 chr2R 10790148 10790159 chr2R 10790236 10790247 5 87 3.0 5.0 4.0 1.0 99 chr2R 10790148 intron CG33144 - chr2R 10790198 intron CG33144 - chr2R 10790247 intron CG33144 - chr2R_5_10790001 chr2R_10790001 RAL-783 450 chr2R 10790161 10790177 chr2R 10790232 10790249 4 80 2.5 4.5 3.5 0.9 88 chr2R 10790161 intron CG33144 - chr2R 10790205 intron CG33144 - chr2R 10790249 intron CG33144 - chr2R_4_10790001 chr2R_10790001 RAL-783 451 chr2R 10796019 10796043 chr2R 10796101 10796125 8 82 1.5 3.0 2.2 2.5 106 chr2R 10796019 intron CG33144 - chr2R 10796072 intron CG33144 - chr2R 10796125 intron CG33144 - chr2R_8_10795001 chr2R_10795001 RAL-783 452 chr2R 10844589 10844613 chr2R 10844674 10844698 6 84 3.0 3.0 3.0 1.5 109 chr2R 10844589 intron CG30015 - chr2R 10844644 intron CG30015 - chr2R 10844698 intron CG30015 - chr2R_6_10840001 chr2R_10840001 RAL-783 453 chr2R 10860486 10860512 chr2R 10860567 10860594 4 82 4.0 1.5 2.8 1.1 108 chr2R 10860486 intron CG30015 - chr2R 10860540 intron CG30015 - chr2R 10860594 intron CG30015 - chr2R_4_10860001 chr2R_10860001 RAL-783 454 chr2R 10899188 10899194 chr2R 10899277 10899280 5 88 0.5 1.0 0.8 2.8 92 chr2R 10899188 intergenic Rpb5 - chr2R 10899234 intergenic Rpb5 - chr2R 10899280 intergenic Rpb5 - chr2R_5_10895001 chr2R_10895001 RAL-783 455 chr2R 10922777 10922790 chr2R 10922863 10922876 6 85 0.0 0.5 0.2 5.0 99 chr2R 10922777 intergenic not near genes chr2R 10922826 intergenic not near genes chr2R 10922876 intergenic not near genes chr2R_6_10920001 chr2R_10920001 RAL-783 456 chr2R 11009817 11009847 chr2R 11018991 11019007 roo 10 9166 1.5 1.5 1.5 4.0 9190 chr2R 11009817 intron luna - chr2R 11014412 intron luna - chr2R 11019007 intron luna - chr2R_10_11010001 chr2R_11010001 RAL-783 457 chr2R 11019885 11019903 chr2R 11024951 11024969 jockey 5 5065 3.5 3.5 3.5 1.1 5084 chr2R 11019885 intron luna - chr2R 11022427 intron luna - chr2R 11024969 intron luna - chr2R_5_11020001 chr2R_11020001 RAL-783 458 chr2R 11207825 11207844 chr2R 11208014 11208037 BS 5 192 3.5 4.0 3.8 1.0 212 chr2R 11207825 intron shn + chr2R 11207931 intron shn + chr2R 11208037 intron shn + chr2R_5_11205001 chr2R_11205001 RAL-783 459 chr2R 11265729 11265734 chr2R 11265811 11265816 4 82 2.5 0.0 1.2 1.8 87 chr2R 11265729 exon Cpr47Ee + chr2R 11265772 intron Cpr47Ee + chr2R 11265816 intron Cpr47Ee + chr2R_4_11265001 chr2R_11265001 RAL-783 460 chr2R 11439203 11439214 chr2R 11439269 11439288 4 72 3.0 3.0 3.0 1.0 85 chr2R 11439203 intron CG7777 + chr2R 11439246 intron CG7777 + chr2R 11439288 intron CG7777 + chr2R_4_11435001 chr2R_11435001 RAL-783 461 chr2R 11465840 11465866 chr2R 11465923 11465951 4 84 2.5 1.5 2.0 1.3 111 chr2R 11465840 intergenic not near genes chr2R 11465896 intergenic not near genes chr2R 11465951 intergenic not near genes chr2R_4_11465001 chr2R_11465001 RAL-783 462 chr2R 11472649 11472678 chr2R 11473846 11473874 pogo 4 1194 2.0 2.0 2.0 1.3 1225 chr2R 11472649 intergenic not near genes chr2R 11473262 intergenic not near genes chr2R 11473874 intergenic not near genes chr2R_4_11470001 chr2R_11470001 RAL-783 463 chr2R 11568701 11568729 chr2R 11568811 11568839 5 110 1.5 2.5 2.0 1.7 138 chr2R 11568701 intergenic not near genes chr2R 11568770 intergenic not near genes chr2R 11568839 intergenic not near genes chr2R_5_11565001 chr2R_11565001 RAL-783 464 chr2R 11614633 11614799 chr2R 11614721 11614887 7 88 1.5 2.0 1.8 2.5 254 chr2R 11614633 intron tou - chr2R 11614760 intron tou - chr2R 11614887 intron tou - chr2R_7_11610001 chr2R_11610001 RAL-783 465 chr2R 11665830 11665838 chr2R 11665912 11665924 5 85 2.5 1.0 1.8 1.8 94 chr2R 11665830 intron,intron Roc2 -,Tret1-1 + chr2R 11665877 intron,intron Roc2 -,Tret1-1 + chr2R 11665924 intron,intron Roc2 -,Tret1-1 + chr2R_5_11665001 chr2R_11665001 RAL-783 466 chr2R 11760732 11760765 chr2R 11760863 11760896 15 130 2.5 5.0 3.8 3.1 164 chr2R 11760732 intron ths + chr2R 11760814 intron ths + chr2R 11760896 intron ths + chr2R_15_11760001 chr2R_11760001 RAL-783 467 chr2R 11826885 11826919 chr2R 11826996 11827031 5 112 0.0 1.5 0.8 2.8 146 chr2R 11826885 3` UTR CG13192 + chr2R 11826958 3` UTR CG13192 + chr2R 11827031 3` UTR CG13192 + chr2R_5_11825001 chr2R_11825001 RAL-783 468 chr2R 11828220 11828244 chr2R 11828297 11828318 5 68 1.5 3.0 2.2 1.6 98 chr2R 11828220 exon Sobp - chr2R 11828269 exon Sobp - chr2R 11828318 exon Sobp - chr2R_5_11825001 chr2R_11825001 RAL-783 469 chr2R 11847788 11847814 chr2R 11848071 11848097 12 283 2.0 2.5 2.2 3.8 309 chr2R 11847788 intron Sln + chr2R 11847942 intron Sln + chr2R 11848097 intron Sln + chr2R_12_11845001 chr2R_11845001 RAL-783 470 chr2R 11848794 11848819 chr2R 11848871 11848896 5 77 1.5 1.5 1.5 2.0 102 chr2R 11848794 intron Sln + chr2R 11848845 intron Sln + chr2R 11848896 exon Sln + chr2R_5_11845001 chr2R_11845001 RAL-783 471 chr2R 11928698 11928710 chr2R 11928776 11928788 4 78 0.0 2.0 1.0 2.0 90 chr2R 11928698 intergenic not near genes chr2R 11928743 intergenic CR44312 - chr2R 11928788 intergenic CR44312 - chr2R_4_11925001 chr2R_11925001 RAL-783 472 chr2R 8518780 8518794 chr2R 12066175 12066193 4 3547396 8.5 10.0 9.2 0.4 3547413 chr2R 8518780 intron mtt - chr2R 10292486 intron CAP + chr2R 12066193 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-783 473 chr2R 8518774 8518782 chr2R 12066195 12066206 4 3547415 9.0 7.0 8.0 0.4 3547432 chr2R 8518774 intron mtt - chr2R 10292490 intron CAP + chr2R 12066206 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-783 474 chr2R 12120412 12120431 chr2R 12120494 12120513 5 79 3.5 6.0 4.8 0.9 101 chr2R 12120412 intergenic not near genes chr2R 12120462 intergenic not near genes chr2R 12120513 intergenic not near genes chr2R_5_12120001 chr2R_12120001 RAL-783 475 chr2R 12145923 12145945 chr2R 12148620 12148638 5 2694 30.5 32.0 31.2 0.2 2715 chr2R 12145923 exon Hen1 + chr2R 12147280 intron,intron Hen1 +,CG8878 - chr2R 12148638 intron,exon Hen1 +,CG8878 - chr2R_5_12145001 chr2R_12145001 RAL-783 476 chr2R 12187477 12187487 chr2R 12190093 12190103 8 2616 51.5 47.5 49.5 0.2 2626 chr2R 12187477 exon Cyp6g1 + chr2R 12188790 exon Cyp6g2 - chr2R 12190103 exon Cyp6g2 - chr2R_8_12185001 chr2R_12185001 RAL-783 477 chr2R 12187471 12187499 chr2R 12190104 12190122 11 2623 56.0 40.0 48.0 0.2 2651 chr2R 12187471 exon Cyp6g1 + chr2R 12188796 exon Cyp6g2 - chr2R 12190122 exon Cyp6g2 - chr2R_11_12185001 chr2R_12185001 RAL-783 478 chr2R 12210137 12210165 chr2R 12210218 12210246 7 81 3.5 2.0 2.8 1.8 109 chr2R 12210137 exon Sr-CII - chr2R 12210192 intron Sr-CII - chr2R 12210246 intron Sr-CII - chr2R_7_12210001 chr2R_12210001 RAL-783 479 chr2R 12236232 12236241 chr2R 12236323 12236332 4 91 4.5 2.5 3.5 0.9 100 chr2R 12236232 intergenic not near genes chr2R 12236282 intergenic not near genes chr2R 12236332 intergenic not near genes chr2R_4_12235001 chr2R_12235001 RAL-783 480 chr2R 12363383 12363415 chr2R 12363815 12363846 7 432 1.5 3.5 2.5 2.0 463 chr2R 12363383 intergenic CG30043 + chr2R 12363614 intergenic CG30043 + chr2R 12363846 intergenic not near genes chr2R_7_12360001 chr2R_12360001 RAL-783 481 chr2R 12481142 12481170 chr2R 12482942 12482973 roo 4 1796 1.5 4.0 2.8 1.1 1831 chr2R 12481142 exon Dh44-R2 + chr2R 12482058 intron Dh44-R2 + chr2R 12482973 intron Dh44-R2 + chr2R_4_12480001 chr2R_12480001 RAL-783 482 chr2R 12501700 12501721 chr2R 12503861 12503883 Rt1c 4 2162 1.0 4.5 2.8 1.1 2183 chr2R 12501700 intron fdl - chr2R 12502792 intron fdl - chr2R 12503883 intron fdl - chr2R_4_12500001 chr2R_12500001 RAL-783 483 chr2R 12789293 12789328 chr2R 12797656 12797662 roo 9 8356 2.0 2.0 2.0 3.0 8369 chr2R 12789293 intron,3` UTR sca +,CR45137 - chr2R 12793478 intron,intron sca +,CR45137 - chr2R 12797662 intron,3` UTR sca +,CR45137 - chr2R_9_12790001 chr2R_12790001 RAL-783 484 chr2R 12842398 12842414 chr2R 12842478 12842494 7 80 4.5 6.0 5.2 1.1 96 chr2R 12842398 exon Cyp9h1 - chr2R 12842446 exon Cyp9h1 - chr2R 12842494 exon Cyp9h1 - chr2R_7_12840001 chr2R_12840001 RAL-783 485 chr2R 13046891 13046907 chr2R 13049243 13049256 4 2351 11.0 7.0 9.0 0.4 2365 chr2R 13046891 exon CG13323 - chr2R 13048074 intergenic not near genes chr2R 13049256 3` UTR CG13324 - chr2R_4_13045001 chr2R_13045001 RAL-783 486 chr2R 13090468 13090487 chr2R 13090574 13090590 5 105 2.5 4.0 3.2 1.2 122 chr2R 13090468 intergenic not near genes chr2R 13090529 intergenic not near genes chr2R 13090590 intergenic not near genes chr2R_5_13090001 chr2R_13090001 RAL-783 487 chr2R 13136843 13136870 chr2R 13141641 13141668 Doc 7 4797 4.0 4.0 4.0 1.4 4825 chr2R 13136843 exon Cap-G + chr2R 13139256 intron Cap-G + chr2R 13141668 intron Cap-G + chr2R_7_13135001 chr2R_13135001 RAL-783 488 chr2R 13167436 13167459 chr2R 13167530 13167553 4 94 1.0 0.0 0.5 2.7 117 chr2R 13167436 intron GLaz - chr2R 13167494 intron GLaz - chr2R 13167553 intron GLaz - chr2R_4_13165001 chr2R_13165001 RAL-783 489 chr2R 13279909 13279926 chr2R 13280022 13280037 4 112 2.5 2.0 2.2 1.2 128 chr2R 13279909 intron Dh31-R - chr2R 13279973 intron Dh31-R - chr2R 13280037 intron Dh31-R - chr2R_4_13275001 chr2R_13275001 RAL-783 490 chr2R 13321928 13321950 chr2R 13322034 13322056 9 105 2.0 0.5 1.2 4.1 128 chr2R 13321928 intergenic not near genes chr2R 13321992 intergenic not near genes chr2R 13322056 intergenic not near genes chr2R_9_13320001 chr2R_13320001 RAL-783 491 chr2R 13404885 13404902 chr2R 13404970 13404977 4 82 5.0 2.0 3.5 0.9 92 chr2R 13404885 intergenic not near genes chr2R 13404931 intergenic not near genes chr2R 13404977 intergenic not near genes chr2R_4_13400001 chr2R_13400001 RAL-783 492 chr2R 13404904 13404914 chr2R 13404963 13404999 4 77 2.5 1.0 1.8 1.4 95 chr2R 13404904 intergenic not near genes chr2R 13404952 intergenic not near genes chr2R 13404999 intergenic not near genes chr2R_4_13400001 chr2R_13400001 RAL-783 493 chr2R 13439109 13439122 chr2R 13439224 13439234 4 114 5.0 1.0 3.0 1.0 125 chr2R 13439109 intergenic CG42321 -,cnn - chr2R 13439172 intergenic CG42321 -,cnn - chr2R 13439234 intergenic cnn -,CG42321 - chr2R_4_13435001 chr2R_13435001 RAL-783 494 chr2R 13547081 13547105 chr2R 13547276 13547300 6 195 3.0 1.0 2.0 2.0 219 chr2R 13547081 intron CG6145 - chr2R 13547190 intron CG6145 - chr2R 13547300 intron CG6145 - chr2R_6_13545001 chr2R_13545001 RAL-783 495 chr2R 13554756 13554774 chr2R 13554841 13554859 4 85 0.0 2.5 1.2 1.8 103 chr2R 13554756 intron Roe1 + chr2R 13554808 intron Roe1 + chr2R 13554859 intron Roe1 + chr2R_4_13550001 chr2R_13550001 RAL-783 496 chr2R 13566260 13566288 chr2R 13566340 13566367 7 80 5.0 0.5 2.8 1.8 107 chr2R 13566260 intergenic not near genes chr2R 13566314 intergenic not near genes chr2R 13566367 intergenic not near genes chr2R_7_13565001 chr2R_13565001 RAL-783 497 chr2R 13567238 13567269 chr2R 13567320 13567347 9 81 1.0 3.0 2.0 3.0 109 chr2R 13567238 intergenic not near genes chr2R 13567292 intergenic not near genes chr2R 13567347 intergenic not near genes chr2R_9_13565001 chr2R_13565001 RAL-783 498 chr2R 13905607 13905636 chr2R 13907584 13907605 Rt1a 9 1973 4.0 1.0 2.5 2.6 1998 chr2R 13905607 intron shot - chr2R 13906606 intron shot - chr2R 13907605 intron shot - chr2R_9_13905001 chr2R_13905001 RAL-783 499 chr2R 13925871 13925891 chr2R 13926022 13926043 7 153 0.0 2.5 1.2 3.2 172 chr2R 13925871 intron shot - chr2R 13925957 intron shot - chr2R 13926043 intron shot - chr2R_7_13925001 chr2R_13925001 RAL-783 500 chr2R 13986881 13986908 chr2R 13986969 13986997 9 88 1.0 2.0 1.5 3.6 116 chr2R 13986881 intron RN-tre - chr2R 13986939 intron RN-tre - chr2R 13986997 intron RN-tre - chr2R_9_13985001 chr2R_13985001 RAL-783 501 chr2R 14393865 14393899 chr2R 14393949 14393984 15 82 3.5 1.5 2.5 4.3 119 chr2R 14393865 intergenic not near genes chr2R 14393924 intergenic not near genes chr2R 14393984 intergenic not near genes chr2R_15_14390001 chr2R_14390001 RAL-783 502 chr2R 14394230 14394248 chr2R 14399019 14399037 Doc 5 4789 1.0 1.5 1.2 2.3 4807 chr2R 14394230 intergenic not near genes chr2R 14396634 intergenic not near genes chr2R 14399037 intergenic not near genes chr2R_5_14395001 chr2R_14395001 RAL-783 503 chr2R 14467307 14467327 chr2R 14476465 14476485 roo 8 9157 3.0 2.0 2.5 2.3 9178 chr2R 14467307 intergenic not near genes chr2R 14471896 intergenic not near genes chr2R 14476485 5` UTR CR44462 + chr2R_8_14470001 chr2R_14470001 RAL-783 504 chr2R 14565561 14565587 chr2R 14565638 14565664 7 77 4.5 1.0 2.8 1.8 103 chr2R 14565561 intron ttv + chr2R 14565612 intron ttv + chr2R 14565664 intron ttv + chr2R_7_14565001 chr2R_14565001 RAL-783 505 chr2R 14566456 14566478 chr2R 14566543 14566565 10 87 2.0 3.0 2.5 2.9 109 chr2R 14566456 intron ttv + chr2R 14566510 intron ttv + chr2R 14566565 intron ttv + chr2R_10_14565001 chr2R_14565001 RAL-783 506 chr2R 14729970 14729989 chr2R 14730054 14730073 10 84 1.0 1.5 1.2 4.5 103 chr2R 14729970 intergenic not near genes chr2R 14730022 intergenic not near genes chr2R 14730073 intergenic not near genes chr2R_10_14730001 chr2R_14730001 RAL-783 507 chr2R 14799877 14799894 chr2R 14799953 14799970 5 76 1.5 4.5 3.0 1.2 93 chr2R 14799877 intron kn - chr2R 14799924 intron kn - chr2R 14799970 intron kn - chr2R_5_14795001 chr2R_14795001 RAL-783 508 chr2R 14855035 14855064 chr2R 14855123 14855156 18 78 2.0 1.5 1.8 6.4 121 chr2R 14855035 5` UTR Ciao1 - chr2R 14855096 intergenic Ciao1 -,HPS1 + chr2R 14855156 intergenic Ciao1 -,HPS1 + chr2R_18_14855001 chr2R_14855001 RAL-783 509 chr2R 14889206 14889225 chr2R 14897814 14897833 Max-element 5 8608 2.0 0.5 1.2 2.3 8627 chr2R 14889206 intergenic Cyp6a8 - chr2R 14893520 intergenic not near genes chr2R 14897833 intergenic not near genes chr2R_5_14890001 chr2R_14890001 RAL-783 510 chr2R 14911701 14911725 chr2R 14911824 14911847 7 123 1.0 2.5 1.8 2.5 146 chr2R 14911701 intron CG10249 - chr2R 14911774 intron CG10249 - chr2R 14911847 intron CG10249 - chr2R_7_14910001 chr2R_14910001 RAL-783 511 chr2R 14922141 14922174 chr2R 14922217 14922247 13 74 5.0 2.5 3.8 2.7 106 chr2R 14922141 intron CG10249 - chr2R 14922194 intron CG10249 - chr2R 14922247 intron CG10249 - chr2R_13_14920001 chr2R_14920001 RAL-783 512 chr2R 15004731 15004758 chr2R 15005060 15005086 jockey 15 329 2.0 1.5 1.8 5.4 355 chr2R 15004731 intergenic not near genes chr2R 15004908 intergenic not near genes chr2R 15005086 intergenic not near genes chr2R_15_15000001 chr2R_15000001 RAL-783 513 chr2R 15015454 15015477 chr2R 15022878 15022885 mdg1 4 7420 4.5 0.0 2.2 1.2 7431 chr2R 15015454 intron hbs + chr2R 15019170 intron hbs + chr2R 15022885 intron hbs + chr2R_4_15015001 chr2R_15015001 RAL-783 514 chr2R 15074817 15074819 chr2R 15075068 15075079 4 258 4.0 4.0 4.0 0.8 262 chr2R 15074817 intergenic not near genes chr2R 15074948 intergenic not near genes chr2R 15075079 intergenic not near genes chr2R_4_15070001 chr2R_15070001 RAL-783 515 chr2R 15119334 15119350 chr2R 15127812 15127818 Tirant 6 8478 1.5 3.5 2.5 1.7 8484 chr2R 15119334 intron chn + chr2R 15123576 intron chn + chr2R 15127818 intron chn + chr2R_6_15120001 chr2R_15120001 RAL-783 516 chr2R 15133483 15133515 chr2R 15133562 15133592 5 79 2.0 4.0 3.0 1.2 109 chr2R 15133483 intron chn + chr2R 15133538 intron chn + chr2R 15133592 intron chn + chr2R_5_15130001 chr2R_15130001 RAL-783 517 chr2R 15137975 15138004 chr2R 15138055 15138086 6 80 0.0 0.0 0.0 6.0 111 chr2R 15137975 intron chn + chr2R 15138030 intron chn + chr2R 15138086 intron chn + chr2R_6_15135001 chr2R_15135001 RAL-783 518 chr2R 15169481 15169494 chr2R 15169561 15169574 8 79 0.0 6.5 3.2 1.9 93 chr2R 15169481 intron igl + chr2R 15169528 intron igl + chr2R 15169574 intron igl + chr2R_8_15165001 chr2R_15165001 RAL-783 519 chr2R 15187885 15187904 chr2R 15187963 15187982 7 78 6.0 5.0 5.5 1.1 97 chr2R 15187885 intron igl + chr2R 15187934 intron igl + chr2R 15187982 intron igl + chr2R_7_15185001 chr2R_15185001 RAL-783 520 chr2R 15191649 15191678 chr2R 15191725 15191754 12 75 4.0 4.5 4.2 2.3 105 chr2R 15191649 intergenic not near genes chr2R 15191702 intergenic not near genes chr2R 15191754 intergenic not near genes chr2R_12_15190001 chr2R_15190001 RAL-783 521 chr2R 15235066 15235087 chr2R 15235180 15235201 7 114 1.0 2.0 1.5 2.8 135 chr2R 15235066 intron Fs - chr2R 15235134 intron Fs - chr2R 15235201 intron Fs - chr2R_7_15235001 chr2R_15235001 RAL-783 522 chr2R 15330214 15330228 chr2R 15330348 15330362 4 134 0.5 2.5 1.5 1.6 148 chr2R 15330214 intergenic CR44371 - chr2R 15330288 intergenic CR44371 - chr2R 15330362 intergenic CR44371 - chr2R_4_15330001 chr2R_15330001 RAL-783 523 chr2R 15645768 15645788 chr2R 15645983 15646003 7 215 14.5 15.0 14.8 0.4 235 chr2R 15645768 intron CG42524 + chr2R 15645886 intron CG42524 + chr2R 15646003 intron CG42524 + chr2R_7_15645001 chr2R_15645001 RAL-783 524 chr2R 15700252 15700275 chr2R 15700347 15700370 9 94 3.0 3.0 3.0 2.2 118 chr2R 15700252 intron,5` UTR CG30080 -,CG42662 - chr2R 15700311 intron,5` UTR CG30080 -,CG42662 - chr2R 15700370 intron,5` UTR CG30080 -,CG42662 - chr2R_9_15700001 chr2R_15700001 RAL-783 525 chr2R 15784425 15784457 chr2R 15784510 15784542 6 85 0.5 2.0 1.2 2.7 117 chr2R 15784425 intron Zasp52 - chr2R 15784484 intron Zasp52 - chr2R 15784542 intron Zasp52 - chr2R_6_15780001 chr2R_15780001 RAL-783 526 chr2R 15847607 15847633 chr2R 15847684 15847710 8 77 1.0 3.0 2.0 2.7 103 chr2R 15847607 intron tun + chr2R 15847658 intron tun + chr2R 15847710 intron tun + chr2R_8_15845001 chr2R_15845001 RAL-783 527 chr2R 16070205 16070224 chr2R 16070298 16070319 4 95 7.5 8.0 7.8 0.5 114 chr2R 16070205 intergenic not near genes chr2R 16070262 intergenic not near genes chr2R 16070319 intergenic not near genes chr2R_4_16070001 chr2R_16070001 RAL-783 528 chr2R 16225201 16225226 chr2R 16225309 16225334 11 105 1.5 0.5 1.0 5.5 133 chr2R 16225201 5` UTR CG15706 - chr2R 16225268 5` UTR CG15706 - chr2R 16225334 intron CG15706 - chr2R_11_16225001 chr2R_16225001 RAL-783 529 chr2R 16372823 16372830 chr2R 16372968 16372977 5 145 4.5 4.0 4.2 1.0 154 chr2R 16372823 intergenic not near genes chr2R 16372900 intergenic not near genes chr2R 16372977 intergenic not near genes chr2R_5_16370001 chr2R_16370001 RAL-783 530 chr2R 16533569 16533595 chr2R 16533650 16533676 8 81 1.0 1.5 1.2 3.6 107 chr2R 16533569 intergenic Sema-2a + chr2R 16533622 intergenic Sema-2a + chr2R 16533676 intergenic Sema-2a + chr2R_8_16530001 chr2R_16530001 RAL-783 531 chr2R 16539636 16539657 chr2R 16544845 16544866 copia 6 5209 1.5 1.0 1.2 2.7 5230 chr2R 16539636 intergenic not near genes chr2R 16542251 intergenic not near genes chr2R 16544866 intergenic not near genes chr2R_6_16540001 chr2R_16540001 RAL-783 532 chr2R 16619971 16620004 chr2R 16620051 16620084 13 80 1.0 0.5 0.8 7.2 113 chr2R 16619971 intron CG5065 + chr2R 16620028 intron CG5065 + chr2R 16620084 intron CG5065 + chr2R_13_16620001 chr2R_16620001 RAL-783 533 chr2R 16705235 16705257 chr2R 16705363 16705384 9 127 3.0 3.5 3.2 2.1 149 chr2R 16705235 intron CG30463 - chr2R 16705310 intron CG30463 - chr2R 16705384 intron CG30463 - chr2R_9_16705001 chr2R_16705001 RAL-783 534 chr2R 16732868 16732882 chr2R 16733038 16733052 6 170 3.5 1.5 2.5 1.7 184 chr2R 16732868 5` UTR CG30463 - chr2R 16732960 intergenic CG30463 - chr2R 16733052 intergenic CG30463 - chr2R_6_16730001 chr2R_16730001 RAL-783 535 chr2R 16737139 16737155 chr2R 16737235 16737255 4 98 6.0 1.0 3.5 0.9 116 chr2R 16737139 3` UTR CG43104 - chr2R 16737197 3` UTR CG43104 - chr2R 16737255 exon CG43104 - chr2R_4_16735001 chr2R_16735001 RAL-783 536 chr2R 16740886 16740918 chr2R 16740980 16740988 6 88 3.5 5.0 4.2 1.2 102 chr2R 16740886 intergenic not near genes chr2R 16740937 intergenic not near genes chr2R 16740988 intergenic not near genes chr2R_6_16740001 chr2R_16740001 RAL-783 537 chr2R 16775666 16775670 chr2R 16775931 16775936 5 266 2.0 1.5 1.8 1.8 270 chr2R 16775666 3` UTR Arp53D + chr2R 16775801 intergenic Arp53D + chr2R 16775936 intergenic Arp53D + chr2R_5_16775001 chr2R_16775001 RAL-783 538 chr2R 16893777 16893801 chr2R 16893860 16893878 4 82 1.0 1.5 1.2 1.8 101 chr2R 16893777 intron CG8910 - chr2R 16893828 intron CG8910 - chr2R 16893878 intron CG8910 - chr2R_4_16890001 chr2R_16890001 RAL-783 539 chr2R 16910230 16910244 chr2R 16910329 16910343 8 98 1.5 3.0 2.2 2.5 113 chr2R 16910230 intergenic not near genes chr2R 16910286 intergenic not near genes chr2R 16910343 intergenic not near genes chr2R_8_16910001 chr2R_16910001 RAL-783 540 chr2R 16918097 16918129 chr2R 16918574 16918607 15 477 4.0 1.0 2.5 4.3 510 chr2R 16918097 intergenic not near genes chr2R 16918352 intergenic not near genes chr2R 16918607 intergenic not near genes chr2R_15_16915001 chr2R_16915001 RAL-783 541 chr2R 17147246 17147269 chr2R 17152277 17152300 jockey 12 5031 3.0 5.0 4.0 2.4 5054 chr2R 17147246 intergenic not near genes chr2R 17149773 intergenic not near genes chr2R 17152300 intergenic not near genes chr2R_12_17145001 chr2R_17145001 RAL-783 542 chr2R 17169288 17169316 chr2R 17169528 17169556 5 240 1.5 0.5 1.0 2.5 268 chr2R 17169288 intergenic not near genes chr2R 17169422 intergenic not near genes chr2R 17169556 intergenic not near genes chr2R_5_17165001 chr2R_17165001 RAL-783 543 chr2R 17176358 17176387 chr2R 17182548 17182576 diver 9 6190 2.0 1.5 1.8 3.2 6218 chr2R 17176358 intergenic not near genes chr2R 17179467 intergenic not near genes chr2R 17182576 intergenic not near genes chr2R_9_17175001 chr2R_17175001 RAL-783 544 chr2R 17236506 17236539 chr2R 17241710 17241743 copia 8 5204 2.5 1.5 2.0 2.7 5237 chr2R 17236506 intron mbl + chr2R 17239124 intron mbl + chr2R 17241743 intron mbl + chr2R_8_17235001 chr2R_17235001 RAL-783 545 chr2R 17250903 17250937 chr2R 17250984 17251018 12 79 3.5 4.0 3.8 2.5 115 chr2R 17250903 intron mbl + chr2R 17250960 intron mbl + chr2R 17251018 intron mbl + chr2R_12_17250001 chr2R_17250001 RAL-783 546 chr2R 17459006 17459032 chr2R 17459090 17459117 7 85 4.5 2.5 3.5 1.6 111 chr2R 17459006 intron CG14478 + chr2R 17459062 intron CG14478 + chr2R 17459117 intron CG14478 + chr2R_7_17455001 chr2R_17455001 RAL-783 547 chr2R 17709981 17710112 chr2R 17710072 17710190 10 80 0.5 1.0 0.8 5.6 209 chr2R 17709981 intron CG6424 - chr2R 17710086 intron CG6424 - chr2R 17710190 intron CG6424 - chr2R_10_17710001 chr2R_17710001 RAL-783 548 chr2R 17782364 17782392 chr2R 17783567 17783595 pogo 5 1203 1.5 1.0 1.2 2.3 1231 chr2R 17782364 intergenic CG33981 -,fab1 - chr2R 17782980 intergenic not near genes chr2R 17783595 intergenic mir-31a - chr2R_5_17780001 chr2R_17780001 RAL-783 549 chr2R 17784031 17784054 chr2R 17784272 17784295 pogo 6 238 3.0 4.0 3.5 1.3 264 chr2R 17784031 intergenic mir-31a - chr2R 17784163 intergenic mir-31a - chr2R 17784295 intergenic mir-31a - chr2R_6_17780001 chr2R_17780001 RAL-783 550 chr2R 17795641 17795648 chr2R 17795740 17795746 5 99 4.0 0.5 2.2 1.6 105 chr2R 17795641 intron Dhit + chr2R 17795694 intron Dhit + chr2R 17795746 intron Dhit + chr2R_5_17795001 chr2R_17795001 RAL-783 551 chr2R 17898854 17898891 chr2R 17898944 17898981 8 89 0.5 1.5 1.0 4.0 127 chr2R 17898854 intron Elk + chr2R 17898918 intron Elk + chr2R 17898981 intron Elk + chr2R_8_17895001 chr2R_17895001 RAL-783 552 chr2R 17922680 17922711 chr2R 17922807 17922838 9 127 3.0 5.0 4.0 1.8 158 chr2R 17922680 intron Elk + chr2R 17922759 intron Elk + chr2R 17922838 intron Elk + chr2R_9_17920001 chr2R_17920001 RAL-783 553 chr2R 18358387 18358421 chr2R 18372599 18372633 roo 5 14212 4.0 0.0 2.0 1.7 14246 chr2R 18358387 intergenic not near genes chr2R 18365510 intergenic not near genes chr2R 18372633 intergenic not near genes chr2R_5_18365001 chr2R_18365001 RAL-783 554 chr2R 18408931 18408944 chr2R 18409026 18409039 7 92 4.0 3.5 3.8 1.5 108 chr2R 18408931 3` UTR GstE8 + chr2R 18408985 intergenic GstE8 +,GstE9 + chr2R 18409039 intergenic GstE9 +,GstE8 + chr2R_7_18405001 chr2R_18405001 RAL-783 555 chr2R 18487846 18487851 chr2R 18495316 18495321 blood 4 7470 0.5 3.5 2.0 1.3 7475 chr2R 18487846 intron CG30116 - chr2R 18491584 intron CG30116 - chr2R 18495321 intron CG30116 - chr2R_4_18490001 chr2R_18490001 RAL-783 556 chr2R 18526596 18526623 chr2R 18526678 18526705 7 81 2.0 4.0 3.0 1.8 109 chr2R 18526596 intergenic CG43066 + chr2R 18526650 intergenic CG43066 + chr2R 18526705 intergenic CG43066 + chr2R_7_18525001 chr2R_18525001 RAL-783 557 chr2R 18575150 18575165 chr2R 18575367 18575382 6 217 0.5 2.5 1.5 2.4 232 chr2R 18575150 intron GEFmeso - chr2R 18575266 intron GEFmeso - chr2R 18575382 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-783 558 chr2R 18575811 18575830 chr2R 18581995 18582018 3S18 6 6187 1.5 5.0 3.2 1.4 6207 chr2R 18575811 intron GEFmeso - chr2R 18578914 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_6_18575001 chr2R_18575001 RAL-783 559 chr2R 18590869 18590900 chr2R 18600021 18600052 roo 9 9152 3.0 1.5 2.2 2.8 9183 chr2R 18590869 intron GEFmeso - chr2R 18595460 intron GEFmeso - chr2R 18600052 intron GEFmeso - chr2R_9_18595001 chr2R_18595001 RAL-783 560 chr2R 18692902 18692920 chr2R 18692989 18693007 4 87 1.5 1.5 1.5 1.6 105 chr2R 18692902 intron Sik3 + chr2R 18692954 intron Sik3 + chr2R 18693007 intron Sik3 + chr2R_4_18690001 chr2R_18690001 RAL-783 561 chr2R 18726891 18727100 chr2R 18726974 18727271 21 116 5.5 3.0 4.2 4.0 380 chr2R 18726891 intron Hs3st-A + chr2R 18727081 intron Hs3st-A + chr2R 18727271 intron Hs3st-A + chr2R_21_18725001 chr2R_18725001 RAL-783 562 chr2R 18883702 18883730 chr2R 18883782 18883810 6 80 1.0 3.5 2.2 1.9 108 chr2R 18883702 intron sano + chr2R 18883756 intron sano + chr2R 18883810 intron sano + chr2R_6_18880001 chr2R_18880001 RAL-783 563 chr2R 18926510 18926529 chr2R 18926597 18926616 8 87 2.5 1.0 1.8 2.9 106 chr2R 18926510 intron sano + chr2R 18926563 intron sano + chr2R 18926616 intron sano + chr2R_8_18925001 chr2R_18925001 RAL-783 564 chr2R 18964922 18964951 chr2R 18964998 18965027 4 76 1.0 2.0 1.5 1.6 105 chr2R 18964922 intergenic not near genes chr2R 18964974 intergenic not near genes chr2R 18965027 intergenic not near genes chr2R_4_18960001 chr2R_18960001 RAL-783 565 chr2R 18989027 18989047 chr2R 18989105 18989125 4 78 0.0 0.0 0.0 4.0 98 chr2R 18989027 intron tn + chr2R 18989076 intron tn + chr2R 18989125 intron tn + chr2R_4_18985001 chr2R_18985001 RAL-783 566 chr2R 19012946 19012960 chr2R 19013040 19013052 4 94 3.5 5.0 4.2 0.8 106 chr2R 19012946 intergenic not near genes chr2R 19012999 intergenic not near genes chr2R 19013052 intergenic not near genes chr2R_4_19010001 chr2R_19010001 RAL-783 567 chr2R 19169558 19169568 chr2R 19169726 19169758 6 186 1.0 2.5 1.8 2.1 200 chr2R 19169558 intron CG10737 + chr2R 19169658 intron CG10737 + chr2R 19169758 intron CG10737 + chr2R_6_19165001 chr2R_19165001 RAL-783 568 chr2R 19424832 19424860 chr2R 19424932 19424960 7 97 2.5 1.5 2.0 2.3 128 chr2R 19424832 5` UTR hts - chr2R 19424896 5` UTR hts - chr2R 19424960 intergenic hts -,CalpA + chr2R_7_19420001 chr2R_19420001 RAL-783 569 chr2R 19588754 19588779 chr2R 19588830 19588857 9 76 3.0 1.5 2.2 2.8 103 chr2R 19588754 intron sm - chr2R 19588806 intron sm - chr2R 19588857 intron sm - chr2R_9_19585001 chr2R_19585001 RAL-783 570 chr2R 19603973 19603990 chr2R 19604057 19604074 6 84 1.0 1.5 1.2 2.7 101 chr2R 19603973 intron sm - chr2R 19604024 intron sm - chr2R 19604074 intron sm - chr2R_6_19600001 chr2R_19600001 RAL-783 571 chr2R 19776596 19776626 chr2R 19779917 19779949 jockey 10 3322 3.0 2.0 2.5 2.9 3353 chr2R 19776596 intergenic not near genes chr2R 19778272 intergenic not near genes chr2R 19779949 intergenic not near genes chr2R_10_19775001 chr2R_19775001 RAL-783 572 chr2R 19957433 19957460 chr2R 19962635 19962662 copia 8 5199 2.5 2.0 2.2 2.5 5229 chr2R 19957433 intergenic CG44623 + chr2R 19960048 intergenic not near genes chr2R 19962662 intergenic not near genes chr2R_8_19960001 chr2R_19960001 RAL-783 573 chr2R 20109300 20109315 chr2R 20109388 20109403 6 88 1.0 4.0 2.5 1.7 103 chr2R 20109300 intergenic not near genes chr2R 20109352 intergenic not near genes chr2R 20109403 intergenic not near genes chr2R_6_20105001 chr2R_20105001 RAL-783 574 chr2R 20223948 20223975 chr2R 20224033 20224060 6 85 3.0 0.0 1.5 2.4 112 chr2R 20223948 intergenic not near genes chr2R 20224004 intergenic not near genes chr2R 20224060 intergenic not near genes chr2R_6_20220001 chr2R_20220001 RAL-783 575 chr2R 20326773 20326793 chr2R 20326837 20326870 6 75 3.0 0.5 1.8 2.1 97 chr2R 20326773 5` UTR MED8 - chr2R 20326822 intergenic MED8 -,CG8929 + chr2R 20326870 intergenic MED8 -,CG8929 + chr2R_6_20325001 chr2R_20325001 RAL-783 576 chr2R 20441051 20441078 chr2R 20441139 20441166 7 88 1.5 2.5 2.0 2.3 115 chr2R 20441051 intron CG12484 + chr2R 20441108 intron CG12484 + chr2R 20441166 intron CG12484 + chr2R_7_20440001 chr2R_20440001 RAL-783 577 chr2R 20443879 20443889 chr2R 20443959 20443969 4 80 4.0 4.5 4.2 0.8 90 chr2R 20443879 intron CG12484 + chr2R 20443924 intron CG12484 + chr2R 20443969 intron CG12484 + chr2R_4_20440001 chr2R_20440001 RAL-783 578 chr2R 20508181 20508202 chr2R 20508259 20508261 5 74 1.5 4.0 2.8 1.3 80 chr2R 20508181 intergenic CR44646 + chr2R 20508221 intergenic CR44646 + chr2R 20508261 intergenic CR44646 + chr2R_5_20505001 chr2R_20505001 RAL-783 579 chr2R 20523039 20523063 chr2R 20523150 20523158 11 109 2.0 2.5 2.2 3.4 119 chr2R 20523039 intergenic not near genes chr2R 20523098 intergenic not near genes chr2R 20523158 intergenic not near genes chr2R_11_20520001 chr2R_20520001 RAL-783 580 chr2R 20601718 20601755 chr2R 20601803 20601840 11 85 0.5 1.5 1.0 5.5 122 chr2R 20601718 intron bl + chr2R 20601779 intron bl + chr2R 20601840 intron bl + chr2R_11_20600001 chr2R_20600001 RAL-783 581 chr2R 20739445 20739477 chr2R 20744213 20744245 F-element 7 4765 2.5 3.5 3.0 1.8 4800 chr2R 20739445 intron dpr + chr2R 20741845 intron dpr + chr2R 20744245 intron dpr + chr2R_7_20740001 chr2R_20740001 RAL-783 582 chr2R 20962907 20962935 chr2R 20963005 20963033 8 98 3.5 2.0 2.8 2.1 126 chr2R 20962907 intergenic not near genes chr2R 20962970 intergenic not near genes chr2R 20963033 intergenic not near genes chr2R_8_20960001 chr2R_20960001 RAL-783 583 chr2R 21075683 21075705 chr2R 21075768 21075791 5 86 2.0 3.0 2.5 1.4 108 chr2R 21075683 intron Treh + chr2R 21075737 intron Treh + chr2R 21075791 intron Treh + chr2R_5_21075001 chr2R_21075001 RAL-783 584 chr2R 21136896 21136918 chr2R 21136980 21137002 7 84 1.5 1.0 1.2 3.2 106 chr2R 21136896 intron Magi - chr2R 21136949 intron Magi - chr2R 21137002 intron Magi - chr2R_7_21135001 chr2R_21135001 RAL-783 585 chr2R 21151118 21151146 chr2R 21153751 21153757 opus 8 2630 3.0 4.0 3.5 1.8 2639 chr2R 21151118 intron CG30389 - chr2R 21152438 intron CG30389 - chr2R 21153757 intron CG30389 - chr2R_8_21150001 chr2R_21150001 RAL-783 586 chr2R 21344441 21344459 chr2R 21344527 21344531 8 84 3.0 2.5 2.8 2.1 90 chr2R 21344441 exon CG15666 + chr2R 21344486 intron CG15666 + chr2R 21344531 intron CG15666 + chr2R_8_21340001 chr2R_21340001 RAL-783 587 chr2R 21451253 21451281 chr2R 21452621 21452653 7 1372 20.0 22.0 21.0 0.3 1400 chr2R 21451253 intron Sdc - chr2R 21451953 intron Sdc - chr2R 21452653 intron Sdc - chr2R_7_21450001 chr2R_21450001 RAL-783 588 chr2R 21505765 21505793 chr2R 21505846 21505866 10 80 3.5 4.0 3.8 2.1 101 chr2R 21505765 intron MESK2 + chr2R 21505816 intron MESK2 + chr2R 21505866 intron MESK2 + chr2R_10_21505001 chr2R_21505001 RAL-783 589 chr2R 21708168 21708182 chr2R 21709970 21709984 4 1802 5.5 7.0 6.2 0.6 1816 chr2R 21708168 intron HmgD + chr2R 21709076 intron,3` UTR HmgD +,CR44749 - chr2R 21709984 intron,3` UTR HmgD +,CG30403 - chr2R_4_21705001 chr2R_21705001 RAL-783 590 chr2R 21738286 21738311 chr2R 21747445 21747445 roo 7 9156 0.5 4.5 2.5 2.0 9159 chr2R 21738286 intergenic not near genes chr2R 21742866 intergenic not near genes chr2R 21747445 intergenic not near genes chr2R_7_21740001 chr2R_21740001 RAL-783 591 chr2R 21753084 21753112 chr2R 21753569 21753597 roo 10 483 3.0 3.0 3.0 2.5 513 chr2R 21753084 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753597 intergenic not near genes chr2R_10_21750001 chr2R_21750001 RAL-783 592 chr2R 21759561 21759585 chr2R 21759647 21759668 5 86 1.0 1.0 1.0 2.5 107 chr2R 21759561 intergenic not near genes chr2R 21759614 intergenic not near genes chr2R 21759668 intergenic not near genes chr2R_5_21755001 chr2R_21755001 RAL-783 593 chr2R 21809523 21809552 chr2R 21817763 21817792 roo 7 8240 1.5 3.5 2.5 2.0 8269 chr2R 21809523 intergenic not near genes chr2R 21813658 intergenic not near genes chr2R 21817792 intergenic not near genes chr2R_7_21810001 chr2R_21810001 RAL-783 594 chr2R 21840803 21840831 chr2R 21840879 21840907 9 72 2.0 2.0 2.0 3.0 104 chr2R 21840803 intergenic not near genes chr2R 21840855 intergenic not near genes chr2R 21840907 intergenic not near genes chr2R_9_21840001 chr2R_21840001 RAL-783 595 chr2R 21985540 21985561 chr2R 21985621 21985642 4 81 1.0 1.0 1.0 2.0 102 chr2R 21985540 intergenic CG30401 - chr2R 21985591 intergenic CG30401 - chr2R 21985642 3` UTR CG30401 - chr2R_4_21985001 chr2R_21985001 RAL-783 596 chr2R 22040163 22040178 chr2R 22040243 22040258 5 81 1.5 4.0 2.8 1.3 95 chr2R 22040163 intergenic not near genes chr2R 22040210 intergenic not near genes chr2R 22040258 intergenic not near genes chr2R_5_22040001 chr2R_22040001 RAL-783 597 chr2R 22088265 22088283 chr2R 22088373 22088390 5 108 2.5 0.0 1.2 2.3 125 chr2R 22088265 intron CG13502 - chr2R 22088328 intron CG13502 - chr2R 22088390 intron CG13502 - chr2R_5_22085001 chr2R_22085001 RAL-783 598 chr2R 22161858 22161874 chr2R 22161938 22161952 9 79 3.5 3.5 3.5 2.0 94 chr2R 22161858 intron a + chr2R 22161905 intron a + chr2R 22161952 intron a + chr2R_9_22160001 chr2R_22160001 RAL-783 599 chr2R 22179225 22179233 chr2R 22179305 22179316 4 81 0.5 0.0 0.2 3.3 91 chr2R 22179225 intron CG11170 - chr2R 22179270 intron CG11170 - chr2R 22179316 intron CG11170 - chr2R_4_22175001 chr2R_22175001 RAL-783 600 chr2R 22185676 22185703 chr2R 22185775 22185802 8 99 4.0 0.0 2.0 2.7 126 chr2R 22185676 3` UTR MED16 + chr2R 22185739 3` UTR MED16 + chr2R 22185802 3` UTR MED16 + chr2R_8_22185001 chr2R_22185001 RAL-783 601 chr2R 22349690 22349717 chr2R 22351472 22351500 jockey 8 1783 3.0 3.5 3.2 1.9 1810 chr2R 22349690 intron Liprin-gamma - chr2R 22350595 intron Liprin-gamma - chr2R 22351500 intron Liprin-gamma - chr2R_8_22350001 chr2R_22350001 RAL-783 602 chr2R 22362664 22362687 chr2R 22362743 22362766 4 79 1.5 3.5 2.5 1.1 102 chr2R 22362664 intron Liprin-gamma - chr2R 22362715 intron Liprin-gamma - chr2R 22362766 intron Liprin-gamma - chr2R_4_22360001 chr2R_22360001 RAL-783 603 chr2R 22371055 22371066 chr2R 22371434 22371445 4 378 2.5 0.0 1.2 1.8 390 chr2R 22371055 intron Liprin-gamma - chr2R 22371250 intron Liprin-gamma - chr2R 22371445 intron Liprin-gamma - chr2R_4_22370001 chr2R_22370001 RAL-783 604 chr2R 22444805 22444813 chr2R 22444911 22444929 5 113 0.0 5.0 2.5 1.4 124 chr2R 22444805 intergenic not near genes chr2R 22444867 intergenic not near genes chr2R 22444929 intergenic not near genes chr2R_5_22440001 chr2R_22440001 RAL-783 605 chr2R 22525750 22525769 chr2R 22529305 22529324 jockey 4 3554 2.5 3.5 3.0 1.0 3574 chr2R 22525750 intron px - chr2R 22527537 intron px - chr2R 22529324 intron px - chr2R_4_22525001 chr2R_22525001 RAL-783 606 chr2R 22577092 22577124 chr2R 22577172 22577204 11 79 3.5 1.0 2.2 3.4 112 chr2R 22577092 intron dnr1 - chr2R 22577148 intron dnr1 - chr2R 22577204 intron dnr1 - chr2R_11_22575001 chr2R_22575001 RAL-783 607 chr2R 22691754 22691769 chr2R 22691855 22691864 6 100 2.0 1.5 1.8 2.1 110 chr2R 22691754 5` UTR CR44764 + chr2R 22691809 5` UTR CR44764 + chr2R 22691864 5` UTR CR44764 + chr2R_6_22690001 chr2R_22690001 RAL-783 608 chr2R 22725646 22725668 chr2R 22725800 22725823 7 155 3.0 3.5 3.2 1.7 177 chr2R 22725646 intron jbug - chr2R 22725734 intron jbug - chr2R 22725823 intron jbug - chr2R_7_22725001 chr2R_22725001 RAL-783 609 chr2R 22757217 22757246 chr2R 22757491 22757519 9 273 3.5 2.0 2.8 2.4 302 chr2R 22757217 intron,intron CG42260 -,CR30267 + chr2R 22757368 intron,intron CG42260 -,CR30267 + chr2R 22757519 intron,intron CG42260 -,CR30267 + chr2R_9_22755001 chr2R_22755001 RAL-783 610 chr2R 22774963 22774999 chr2R 22775382 22775418 jockey 12 417 4.5 3.5 4.0 2.4 455 chr2R 22774963 intron CG42260 - chr2R 22775190 intron CG42260 - chr2R 22775418 intron CG42260 - chr2R_12_22775001 chr2R_22775001 RAL-783 611 chr2R 22945054 22945081 chr2R 22945163 22945194 9 113 5.5 1.5 3.5 2.0 140 chr2R 22945054 exon CG42694 + chr2R 22945124 3` UTR CG42694 + chr2R 22945194 intergenic CG42694 + chr2R_9_22945001 chr2R_22945001 RAL-783 612 chr2R 23029613 23029638 chr2R 23029690 23029711 5 76 1.5 3.5 2.5 1.4 98 chr2R 23029613 intron,intron twi +,CG42741 - chr2R 23029662 intron,intron twi +,CG42741 - chr2R 23029711 intron,intron twi +,CG42741 - chr2R_5_23025001 chr2R_23025001 RAL-783 613 chr2R 23052651 23052686 chr2R 23052727 23052762 5 76 2.0 2.5 2.2 1.6 111 chr2R 23052651 intergenic not near genes chr2R 23052706 intergenic not near genes chr2R 23052762 intergenic not near genes chr2R_5_23050001 chr2R_23050001 RAL-783 614 chr2R 23061753 23061788 chr2R 23061829 23061864 14 74 1.5 3.5 2.5 4.0 111 chr2R 23061753 3` UTR l(2)06496 - chr2R 23061808 3` UTR l(2)06496 - chr2R 23061864 3` UTR l(2)06496 - chr2R_14_23060001 chr2R_23060001 RAL-783 615 chr2R 23186099 23186122 chr2R 23186244 23186267 7 145 0.0 0.5 0.2 5.8 168 chr2R 23186099 intron CG34371 - chr2R 23186183 intron CG34371 - chr2R 23186267 intron CG34371 - chr2R_7_23185001 chr2R_23185001 RAL-783 616 chr2R 23356277 23356306 chr2R 23356366 23356395 8 89 3.0 2.5 2.8 2.1 118 chr2R 23356277 3` UTR Rpi + chr2R 23356336 3` UTR Rpi + chr2R 23356395 3` UTR,3` UTR Rpi +,CG3500 - chr2R_8_23355001 chr2R_23355001 RAL-783 617 chr2R 23423738 23423770 chr2R 23423896 23423928 6 158 1.5 1.0 1.2 2.7 190 chr2R 23423738 intron CG9815 - chr2R 23423833 intron CG9815 - chr2R 23423928 intron CG9815 - chr2R_6_23420001 chr2R_23420001 RAL-783 618 chr2R 23437230 23437247 chr2R 23437306 23437324 5 75 1.5 3.5 2.5 1.4 94 chr2R 23437230 intergenic not near genes chr2R 23437277 intergenic not near genes chr2R 23437324 intergenic not near genes chr2R_5_23435001 chr2R_23435001 RAL-783 619 chr2R 23521406 23521424 chr2R 23521499 23521520 9 95 4.0 3.0 3.5 2.0 114 chr2R 23521406 intron RabX1 - chr2R 23521463 intron RabX1 - chr2R 23521520 intron RabX1 - chr2R_9_23520001 chr2R_23520001 RAL-783 620 chr2R 23582484 23582504 chr2R 23582644 23582656 5 158 4.5 1.5 3.0 1.2 172 chr2R 23582484 intron apt + chr2R 23582570 intron apt + chr2R 23582656 intron apt + chr2R_5_23580001 chr2R_23580001 RAL-783 621 chr2R 23758324 23758349 chr2R 23758400 23758421 7 75 4.0 4.0 4.0 1.4 97 chr2R 23758324 intron CG9850 - chr2R 23758372 intron CG9850 - chr2R 23758421 intron CG9850 - chr2R_7_23755001 chr2R_23755001 RAL-783 622 chr2R 23914304 23914332 chr2R 23921928 23921941 412 12 7622 2.0 3.5 2.8 3.2 7637 chr2R 23914304 exon kcc + chr2R 23918122 intron kcc + chr2R 23921941 intron kcc + chr2R_12_23915001 chr2R_23915001 RAL-783 623 chr2R 23926834 23926865 chr2R 23926916 23926947 5 82 1.5 3.0 2.2 1.6 113 chr2R 23926834 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926890 3` UTR,3` UTR Ca-P60A -,CG2812 + chr2R 23926947 3` UTR Ca-P60A - chr2R_5_23925001 chr2R_23925001 RAL-783 624 chr2R 23986531 23986548 chr2R 23986611 23986626 7 80 1.0 2.5 1.8 2.5 95 chr2R 23986531 intron Phm - chr2R 23986578 intron Phm - chr2R 23986626 intron,5` UTR Phm -,CG30178 + chr2R_7_23985001 chr2R_23985001 RAL-783 625 chr2R 24031382 24031412 chr2R 24031465 24031496 9 84 3.0 2.0 2.5 2.6 114 chr2R 24031382 5` UTR CG30172 - chr2R 24031439 intergenic CG30172 -,Chi - chr2R 24031496 intergenic Chi -,CG30172 - chr2R_9_24030001 chr2R_24030001 RAL-783 626 chr2R 24077929 24077957 chr2R 24078005 24078007 5 71 0.5 4.0 2.2 1.6 78 chr2R 24077929 3` UTR Mlp60A + chr2R 24077968 3` UTR Mlp60A + chr2R 24078007 3` UTR Mlp60A + chr2R_5_24075001 chr2R_24075001 RAL-783 627 chr2R 24087193 24087214 chr2R 24087315 24087333 5 121 1.5 5.0 3.2 1.2 140 chr2R 24087193 intron snama + chr2R 24087263 intron snama + chr2R 24087333 intron snama + chr2R_5_24085001 chr2R_24085001 RAL-783 628 chr2R 24147069 24147097 chr2R 24154647 24154675 412 12 7575 3.5 9.0 6.2 1.7 7606 chr2R 24147069 intron Dat + chr2R 24150872 intron Dat + chr2R 24154675 intron Dat + chr2R_12_24150001 chr2R_24150001 RAL-783 629 chr2R 24177241 24177267 chr2R 24184726 24184752 412 5 7485 5.5 2.0 3.8 1.0 7511 chr2R 24177241 3` UTR Nop60B + chr2R 24180996 intron Nop60B + chr2R 24184752 3` UTR Nop60B + chr2R_5_24180001 chr2R_24180001 RAL-783 630 chr2R 24212290 24212322 chr2R 24212388 24212420 10 98 4.0 1.5 2.8 2.6 130 chr2R 24212290 intergenic CG30419 - chr2R 24212355 intergenic CG30419 - chr2R 24212420 intergenic CG30419 - chr2R_10_24210001 chr2R_24210001 RAL-783 631 chr2R 24222961 24222991 chr2R 24223112 24223140 10 153 2.0 2.0 2.0 3.3 179 chr2R 24222961 intron CG30419 - chr2R 24223050 intron CG30419 - chr2R 24223140 intron CG30419 - chr2R_10_24220001 chr2R_24220001 RAL-783 632 chr2R 24292837 24292845 chr2R 24292914 24292922 4 75 6.0 4.0 5.0 0.7 85 chr2R 24292837 intergenic not near genes chr2R 24292880 intergenic not near genes chr2R 24292922 intergenic not near genes chr2R_4_24290001 chr2R_24290001 RAL-783 633 chr2R 24320706 24320741 chr2R 24320916 24320952 9 208 2.0 2.0 2.0 3.0 246 chr2R 24320706 intergenic not near genes chr2R 24320829 intergenic not near genes chr2R 24320952 intergenic not near genes chr2R_9_24320001 chr2R_24320001 RAL-783 634 chr2R 24366259 24366273 chr2R 24366346 24366360 5 85 1.0 2.5 1.8 1.8 101 chr2R 24366259 intron,intron bs +,CR44811 - chr2R 24366310 intron,intron bs +,CR44811 - chr2R 24366360 intron,intron bs +,CR44811 - chr2R_5_24365001 chr2R_24365001 RAL-783 635 chr2R 24383825 24383857 chr2R 24383906 24383938 6 80 0.5 1.5 1.0 3.0 113 chr2R 24383825 intron mAChR-A - chr2R 24383882 intron mAChR-A - chr2R 24383938 exon mAChR-A - chr2R_6_24380001 chr2R_24380001 RAL-783 636 chr2R 24509308 24509340 chr2R 24509392 24509425 9 85 5.5 1.5 3.5 2.0 117 chr2R 24509308 intergenic Letm1 - chr2R 24509366 intergenic Letm1 - chr2R 24509425 intergenic Letm1 - chr2R_9_24505001 chr2R_24505001 RAL-783 637 chr2R 24590121 24590129 chr2R 24590211 24590221 6 90 8.5 6.5 7.5 0.7 100 chr2R 24590121 intron pio + chr2R 24590171 intron pio + chr2R 24590221 intron pio + chr2R_6_24590001 chr2R_24590001 RAL-783 638 chr2R 24590130 24590145 chr2R 24590205 24590235 7 89 3.5 5.0 4.2 1.3 105 chr2R 24590130 intron pio + chr2R 24590182 intron pio + chr2R 24590235 intron pio + chr2R_7_24590001 chr2R_24590001 RAL-783 639 chr2R 24636904 24636931 chr2R 24636990 24637016 5 86 1.0 0.0 0.5 3.3 112 chr2R 24636904 intron CG13594 - chr2R 24636960 intron CG13594 - chr2R 24637016 intron CG13594 - chr2R_5_24635001 chr2R_24635001 RAL-783 640 chr2R 24727892 24727914 chr2R 24735400 24735418 mdg1 6 7507 1.0 8.0 4.5 1.1 7526 chr2R 24727892 intron Mid1 - chr2R 24731655 intron Mid1 - chr2R 24735418 intron Mid1 - chr2R_6_24730001 chr2R_24730001 RAL-783 641 chr2R 24749170 24749189 chr2R 24749275 24749277 5 101 2.5 2.0 2.2 1.6 107 chr2R 24749170 intron CG30421 + chr2R 24749224 intron CG30421 + chr2R 24749277 intron CG30421 + chr2R_5_24745001 chr2R_24745001 RAL-783 642 chr2R 24763618 24763640 chr2R 24765590 24765612 G2 8 1974 1.0 4.5 2.8 2.1 1994 chr2R 24763618 exon CG3894 + chr2R 24764615 intron CG3894 + chr2R 24765612 exon CG3894 + chr2R_8_24760001 chr2R_24760001 RAL-783 643 chr2R 24844341 24844376 chr2R 24844427 24844462 9 86 2.0 1.5 1.8 3.2 121 chr2R 24844341 intergenic not near genes chr2R 24844402 intergenic not near genes chr2R 24844462 intergenic not near genes chr2R_9_24840001 chr2R_24840001 RAL-783 644 chr2R 24859841 24859859 chr2R 24859927 24859943 5 86 2.0 2.0 2.0 1.7 102 chr2R 24859841 5` UTR CR44829 + chr2R 24859892 5` UTR CR44829 + chr2R 24859943 5` UTR CR44829 + chr2R_5_24855001 chr2R_24855001 RAL-783 645 chr2R 24884051 24884070 chr2R 24884133 24884152 4 82 2.5 1.0 1.8 1.4 101 chr2R 24884051 intron NKAIN + chr2R 24884102 intron NKAIN + chr2R 24884152 intron NKAIN + chr2R_4_24880001 chr2R_24880001 RAL-783 646 chr2R 25014543 25014576 chr2R 25014619 25014651 13 73 5.0 3.0 4.0 2.6 108 chr2R 25014543 intron uzip + chr2R 25014597 intron uzip + chr2R 25014651 intron uzip + chr2R_13_25010001 chr2R_25010001 RAL-783 647 chr2R 25018340 25018352 chr2R 25018441 25018452 4 101 5.0 4.0 4.5 0.7 112 chr2R 25018340 intron uzip + chr2R 25018396 intron uzip + chr2R 25018452 intron uzip + chr2R_4_25015001 chr2R_25015001 RAL-783 648 chr2R 25018353 25018374 chr2R 25018440 25018475 8 99 2.5 4.0 3.2 1.9 122 chr2R 25018353 intron uzip + chr2R 25018414 intron uzip + chr2R 25018475 intron uzip + chr2R_8_25015001 chr2R_25015001 RAL-783 649 chr2R 25104800 25104829 chr2R 25104895 25104908 7 92 0.0 1.5 0.8 3.9 108 chr2R 25104800 intron lov - chr2R 25104854 intron lov - chr2R 25104908 intron lov - chr2R_7_25100001 chr2R_25100001 RAL-783 650 chr2R 25124458 25124485 chr2R 25124549 25124576 5 91 1.5 2.0 1.8 1.8 118 chr2R 25124458 intron lov - chr2R 25124517 intron lov - chr2R 25124576 intron lov - chr2R_5_25120001 chr2R_25120001 RAL-783 651 chr2R 25135272 25135296 chr2R 25135357 25135381 7 85 2.5 1.5 2.0 2.3 109 chr2R 25135272 intron lov - chr2R 25135326 intron lov - chr2R 25135381 intron lov - chr2R_7_25135001 chr2R_25135001 RAL-783 652 chr2R 25167128 25167157 chr2R 25167208 25167237 7 80 0.5 0.0 0.2 5.8 109 chr2R 25167128 intergenic not near genes chr2R 25167182 intergenic CG34038 + chr2R 25167237 intergenic CG34038 + chr2R_7_25165001 chr2R_25165001 RAL-783 653 chr3L 68986 69003 chr3L 69073 69089 8 86 2.5 3.5 3.0 2.0 103 chr3L 68986 3` UTR Lsp1gamma + chr3L 69038 intergenic Lsp1gamma +,CR44510 + chr3L 69089 intergenic CR44510 +,Lsp1gamma + chr3L_8_65001 chr3L_65001 RAL-783 654 chr3L 99411 99437 chr3L 99526 99548 4 114 2.0 3.0 2.5 1.1 137 chr3L 99411 intergenic not near genes chr3L 99480 intergenic not near genes chr3L 99548 intergenic not near genes chr3L_4_95001 chr3L_95001 RAL-783 655 chr3L 110218 110244 chr3L 119385 119411 roo 5 9166 2.5 2.0 2.2 1.6 9193 chr3L 110218 intergenic not near genes chr3L 114814 intergenic not near genes chr3L 119411 intergenic not near genes chr3L_5_110001 chr3L_110001 RAL-783 656 chr3L 390958 390980 chr3L 391064 391086 15 105 1.5 2.0 1.8 5.4 128 chr3L 390958 intron trh - chr3L 391022 intron trh - chr3L 391086 intron trh - chr3L_15_390001 chr3L_390001 RAL-783 657 chr3L 402688 402716 chr3L 409741 409769 297 6 7052 4.0 4.0 4.0 1.2 7081 chr3L 402688 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409769 intergenic not near genes chr3L_6_405001 chr3L_405001 RAL-783 658 chr3L 494602 494620 chr3L 494669 494701 6 78 3.0 0.0 1.5 2.4 99 chr3L 494602 intron klar - chr3L 494652 intron klar - chr3L 494701 intron klar - chr3L_6_490001 chr3L_490001 RAL-783 659 chr3L 502421 502440 chr3L 502633 502652 7 212 1.0 1.0 1.0 3.5 231 chr3L 502421 intron klar - chr3L 502536 intron klar - chr3L 502652 intron klar - chr3L_7_500001 chr3L_500001 RAL-783 660 chr3L 534781 534800 chr3L 535037 535047 7 254 3.0 3.0 3.0 1.8 266 chr3L 534781 intron klar - chr3L 534914 intron klar - chr3L 535047 intron klar - chr3L_7_530001 chr3L_530001 RAL-783 661 chr3L 611353 611379 chr3L 611436 611462 11 82 2.0 2.0 2.0 3.7 109 chr3L 611353 intergenic not near genes chr3L 611408 intergenic not near genes chr3L 611462 intergenic not near genes chr3L_11_610001 chr3L_610001 RAL-783 662 chr3L 642473 642502 chr3L 642564 642592 7 90 2.0 2.0 2.0 2.3 119 chr3L 642473 5` UTR CR43334 + chr3L 642532 5` UTR CR43334 + chr3L 642592 5` UTR CR43334 + chr3L_7_640001 chr3L_640001 RAL-783 663 chr3L 651388 651416 chr3L 651476 651504 12 86 5.5 3.0 4.2 2.3 116 chr3L 651388 intergenic Gale +,CG3402 - chr3L 651446 intergenic CG3402 -,Gale + chr3L 651504 intergenic CG3402 -,Gale + chr3L_12_650001 chr3L_650001 RAL-783 664 chr3L 704280 704298 chr3L 704417 704435 5 137 0.0 4.5 2.2 1.6 155 chr3L 704280 intergenic not near genes chr3L 704358 intergenic not near genes chr3L 704435 intergenic not near genes chr3L_5_700001 chr3L_700001 RAL-783 665 chr3L 705906 705929 chr3L 706002 706025 4 96 1.5 2.5 2.0 1.3 119 chr3L 705906 intergenic CG13895 -,CR44514 + chr3L 705966 3` UTR CG13895 - chr3L 706025 3` UTR CG13895 - chr3L_4_705001 chr3L_705001 RAL-783 666 chr3L 789915 789925 chr3L 790400 790410 roo 4 485 2.5 2.0 2.2 1.2 495 chr3L 789915 intergenic not near genes chr3L 790162 intergenic not near genes chr3L 790410 intergenic not near genes chr3L_4_790001 chr3L_790001 RAL-783 667 chr3L 805589 805623 chr3L 805833 805866 5 244 1.5 1.0 1.2 2.3 277 chr3L 805589 intergenic not near genes chr3L 805728 intergenic not near genes chr3L 805866 intergenic not near genes chr3L_5_805001 chr3L_805001 RAL-783 668 chr3L 822085 822094 chr3L 822165 822174 6 80 0.0 3.5 1.8 2.1 89 chr3L 822085 intergenic not near genes chr3L 822130 intergenic not near genes chr3L 822174 intergenic not near genes chr3L_6_820001 chr3L_820001 RAL-783 669 chr3L 857999 858030 chr3L 866480 866511 Tirant 7 8480 3.5 4.5 4.0 1.4 8512 chr3L 857999 intergenic not near genes chr3L 862255 intergenic not near genes chr3L 866511 5` UTR CG12502 + chr3L_7_860001 chr3L_860001 RAL-783 670 chr3L 925174 925210 chr3L 932600 932636 mdg1 9 7426 3.0 1.5 2.2 2.8 7462 chr3L 925174 intron Glut1 + chr3L 928905 intron Glut1 + chr3L 932636 intron Glut1 + chr3L_9_925001 chr3L_925001 RAL-783 671 chr3L 933913 933939 chr3L 934015 934042 6 103 1.0 3.0 2.0 2.0 129 chr3L 933913 intron Glut1 + chr3L 933978 intron Glut1 + chr3L 934042 intron Glut1 + chr3L_6_930001 chr3L_930001 RAL-783 672 chr3L 939770 939797 chr3L 940891 940918 jockey 9 1121 1.5 4.0 2.8 2.4 1148 chr3L 939770 intron Glut1 + chr3L 940344 intron Glut1 + chr3L 940918 intron Glut1 + chr3L_9_940001 chr3L_940001 RAL-783 673 chr3L 1003053 1003070 chr3L 1003129 1003147 9 76 3.0 1.5 2.2 2.8 94 chr3L 1003053 intron trio - chr3L 1003100 intron trio - chr3L 1003147 intron trio - chr3L_9_1000001 chr3L_1000001 RAL-783 674 chr3L 1040554 1040581 chr3L 1040638 1040665 5 84 1.5 3.0 2.2 1.6 111 chr3L 1040554 intron bab1 - chr3L 1040610 intron bab1 - chr3L 1040665 intron bab1 - chr3L_5_1040001 chr3L_1040001 RAL-783 675 chr3L 1063337 1063370 chr3L 1063713 1063746 12 376 2.0 3.0 2.5 3.4 409 chr3L 1063337 intron bab1 - chr3L 1063542 intron bab1 - chr3L 1063746 intron bab1 - chr3L_12_1060001 chr3L_1060001 RAL-783 676 chr3L 1154134 1154161 chr3L 1163284 1163311 roo 5 9150 3.5 0.5 2.0 1.7 9177 chr3L 1154134 intron bab2 - chr3L 1158722 intron bab2 - chr3L 1163311 intron bab2 - chr3L_5_1155001 chr3L_1155001 RAL-783 677 chr3L 1189632 1189652 chr3L 1189718 1189738 11 86 1.5 4.0 2.8 2.9 106 chr3L 1189632 5` UTR CG13912 + chr3L 1189685 5` UTR CG13912 + chr3L 1189738 5` UTR CG13912 + chr3L_11_1185001 chr3L_1185001 RAL-783 678 chr3L 1219597 1219623 chr3L 1227330 1227356 412 10 7732 2.5 3.5 3.0 2.5 7759 chr3L 1219597 intron mwh + chr3L 1223476 intron mwh + chr3L 1227356 intron mwh + chr3L_10_1220001 chr3L_1220001 RAL-783 679 chr3L 1260150 1260164 chr3L 1260230 1260244 5 80 2.0 2.5 2.2 1.6 94 chr3L 1260150 intron CG9134 + chr3L 1260197 intron CG9134 + chr3L 1260244 intron CG9134 + chr3L_5_1260001 chr3L_1260001 RAL-783 680 chr3L 1268168 1268180 chr3L 1268350 1268367 5 186 1.5 0.0 0.8 2.8 199 chr3L 1268168 intron CG9134 + chr3L 1268268 intron CG9134 + chr3L 1268367 intron CG9134 + chr3L_5_1265001 chr3L_1265001 RAL-783 681 chr3L 1347158 1347192 chr3L 1347243 1347267 11 78 4.0 4.5 4.2 2.1 109 chr3L 1347158 intron Ptp61F - chr3L 1347212 intron Ptp61F - chr3L 1347267 intron Ptp61F - chr3L_11_1345001 chr3L_1345001 RAL-783 682 chr3L 1358759 1358794 chr3L 1359140 1359163 12 379 4.0 1.0 2.5 3.4 404 chr3L 1358759 intron Ptp61F - chr3L 1358961 intron Ptp61F - chr3L 1359163 intron Ptp61F - chr3L_12_1355001 chr3L_1355001 RAL-783 683 chr3L 1415776 1415802 chr3L 1415858 1415884 10 81 2.5 5.0 3.8 2.1 108 chr3L 1415776 intron Ptp61F - chr3L 1415830 intron Ptp61F - chr3L 1415884 intron Ptp61F - chr3L_10_1415001 chr3L_1415001 RAL-783 684 chr3L 1506017 1506033 chr3L 1513595 1513627 17.6 4 7591 1.0 2.0 1.5 1.6 7610 chr3L 1506017 intron,intron Psa +,cue - chr3L 1509822 intron,intron Psa +,cue - chr3L 1513627 intron,intron Psa +,cue - chr3L_4_1505001 chr3L_1505001 RAL-783 685 chr3L 1584110 1584124 chr3L 1584192 1584197 5 80 0.0 1.5 0.8 2.8 87 chr3L 1584110 intron CG13917 + chr3L 1584154 intron CG13917 + chr3L 1584197 intron CG13917 + chr3L_5_1580001 chr3L_1580001 RAL-783 686 chr3L 1688253 1688257 chr3L 1688381 1688385 4 128 3.0 0.0 1.5 1.6 132 chr3L 1688253 intron CG7991 + chr3L 1688319 intron CG7991 + chr3L 1688385 intron CG7991 + chr3L_4_1685001 chr3L_1685001 RAL-783 687 chr3L 1740870 1740879 chr3L 1741114 1741124 pogo 4 244 1.5 2.0 1.8 1.4 254 chr3L 1740870 intron Gk + chr3L 1740997 intron Gk + chr3L 1741124 intron Gk + chr3L_4_1740001 chr3L_1740001 RAL-783 688 chr3L 1991125 1991145 chr3L 1991202 1991223 8 78 3.5 1.5 2.5 2.3 98 chr3L 1991125 intergenic not near genes chr3L 1991174 intergenic not near genes chr3L 1991223 intergenic not near genes chr3L_8_1990001 chr3L_1990001 RAL-783 689 chr3L 2168773 2168805 chr3L 2168862 2168896 15 90 2.5 2.0 2.2 4.7 123 chr3L 2168773 exon CG15879 - chr3L 2168834 intron CG15879 - chr3L 2168896 intron CG15879 - chr3L_15_2165001 chr3L_2165001 RAL-783 690 chr3L 2308007 2308036 chr3L 2308113 2308142 8 106 1.0 3.5 2.2 2.5 135 chr3L 2308007 intergenic not near genes chr3L 2308074 intergenic not near genes chr3L 2308142 intergenic not near genes chr3L_8_2305001 chr3L_2305001 RAL-783 691 chr3L 2332979 2333006 chr3L 2333249 2333276 10 269 6.0 2.5 4.2 1.9 297 chr3L 2332979 intron MsR1 + chr3L 2333128 intron MsR1 + chr3L 2333276 intron MsR1 + chr3L_10_2330001 chr3L_2330001 RAL-783 692 chr3L 2533649 2533678 chr3L 2533731 2533759 7 82 3.0 5.0 4.0 1.4 110 chr3L 2533649 intron Spn - chr3L 2533704 intron Spn - chr3L 2533759 intron Spn - chr3L_7_2530001 chr3L_2530001 RAL-783 693 chr3L 2561543 2561554 chr3L 2561620 2561630 5 77 1.5 2.5 2.0 1.7 87 chr3L 2561543 intron msn - chr3L 2561586 intron msn - chr3L 2561630 intron msn - chr3L_5_2560001 chr3L_2560001 RAL-783 694 chr3L 2719544 2719560 chr3L 2719646 2719662 6 102 0.5 1.5 1.0 3.0 118 chr3L 2719544 3` UTR Mrtf - chr3L 2719603 3` UTR Mrtf - chr3L 2719662 3` UTR Mrtf - chr3L_6_2715001 chr3L_2715001 RAL-783 695 chr3L 2854477 2854489 chr3L 2854555 2854567 6 78 1.0 0.5 0.8 3.3 90 chr3L 2854477 intron CG43444 - chr3L 2854522 intron CG43444 - chr3L 2854567 intron CG43444 - chr3L_6_2850001 chr3L_2850001 RAL-783 696 chr3L 2899579 2899602 chr3L 2899691 2899715 6 113 2.0 4.5 3.2 1.4 136 chr3L 2899579 intron Shab + chr3L 2899647 intron Shab + chr3L 2899715 intron Shab + chr3L_6_2895001 chr3L_2895001 RAL-783 697 chr3L 2901374 2901388 chr3L 2901537 2901541 7 160 1.5 0.5 1.0 3.5 167 chr3L 2901374 intron Shab + chr3L 2901458 intron Shab + chr3L 2901541 intron Shab + chr3L_7_2900001 chr3L_2900001 RAL-783 698 chr3L 2927846 2927872 chr3L 2936122 2936149 Tirant 10 8277 2.5 1.5 2.0 3.3 8303 chr3L 2927846 intron Shab + chr3L 2931998 intron Shab + chr3L 2936149 intron Shab + chr3L_10_2930001 chr3L_2930001 RAL-783 699 chr3L 3028341 3028373 chr3L 3028420 3028452 8 78 2.5 4.0 3.2 1.9 111 chr3L 3028341 intergenic not near genes chr3L 3028396 intergenic not near genes chr3L 3028452 intergenic not near genes chr3L_8_3025001 chr3L_3025001 RAL-783 700 chr3L 3259818 3259833 chr3L 3259917 3259933 8 100 1.5 3.5 2.5 2.3 115 chr3L 3259818 intron ckd + chr3L 3259876 intron ckd + chr3L 3259933 intron ckd + chr3L_8_3255001 chr3L_3255001 RAL-783 701 chr3L 3281457 3281469 chr3L 3281953 3281965 Doc 4 496 2.0 6.5 4.2 0.8 508 chr3L 3281457 intron CG12017 + chr3L 3281711 intron CG12017 + chr3L 3281965 intron CG12017 + chr3L_4_3280001 chr3L_3280001 RAL-783 702 chr3L 3314136 3314159 chr3L 3314270 3314293 9 132 13.0 7.0 10.0 0.8 157 chr3L 3314136 intergenic ZnT63C +,Drsl2 + chr3L 3314214 intergenic Drsl2 +,ZnT63C + chr3L 3314293 intergenic Drsl2 +,ZnT63C + chr3L_9_3310001 chr3L_3310001 RAL-783 703 chr3L 3314167 3314171 chr3L 3314269 3314282 4 120 6.5 6.5 6.5 0.5 115 chr3L 3314167 intergenic ZnT63C +,Drsl2 + chr3L 3314224 intergenic Drsl2 +,ZnT63C + chr3L 3314282 intergenic Drsl2 +,ZnT63C + chr3L_4_3310001 chr3L_3310001 RAL-783 704 chr3L 3312265 3312296 chr3L 3315546 3315577 11 3283 21.5 15.5 18.5 0.6 3312 chr3L 3312265 exon ZnT63C + chr3L 3313921 3` UTR ZnT63C + chr3L 3315577 intergenic Drsl4 +,Drsl3 + chr3L_11_3310001 chr3L_3310001 RAL-783 705 chr3L 3315977 3315998 chr3L 3316077 3316099 4 101 3.5 1.0 2.2 1.2 122 chr3L 3315977 intergenic Drsl4 + chr3L 3316038 intergenic Drsl4 + chr3L 3316099 intergenic Drsl4 + chr3L_4_3315001 chr3L_3315001 RAL-783 706 chr3L 3436290 3436313 chr3L 3436369 3436392 5 79 0.0 2.5 1.2 2.3 102 chr3L 3436290 intron eIF5B - chr3L 3436341 intron eIF5B - chr3L 3436392 intron eIF5B - chr3L_5_3435001 chr3L_3435001 RAL-783 707 chr3L 3470159 3470187 chr3L 3470235 3470263 6 76 0.5 1.0 0.8 3.3 104 chr3L 3470159 intron CG14971 - chr3L 3470211 intron CG14971 - chr3L 3470263 intron CG14971 - chr3L_6_3470001 chr3L_3470001 RAL-783 708 chr3L 3475078 3475113 chr3L 3475516 3475557 jockey 10 443 1.0 2.5 1.8 3.6 479 chr3L 3475078 intron CG42324 + chr3L 3475318 intron CG42324 + chr3L 3475557 intron CG42324 + chr3L_10_3475001 chr3L_3475001 RAL-783 709 chr3L 3483538 3483569 chr3L 3483745 3483776 6 207 4.5 0.5 2.5 1.7 238 chr3L 3483538 intron CG42324 + chr3L 3483657 intron CG42324 + chr3L 3483776 intron CG42324 + chr3L_6_3480001 chr3L_3480001 RAL-783 710 chr3L 3484296 3484315 chr3L 3484388 3484407 5 92 3.5 2.5 3.0 1.2 111 chr3L 3484296 intron,exon CG42324 +,CG43074 - chr3L 3484352 intron,exon CG42324 +,CG43074 - chr3L 3484407 intron,intron CG42324 +,CG43074 - chr3L_5_3480001 chr3L_3480001 RAL-783 711 chr3L 3584592 3584620 chr3L 3584675 3584704 10 82 4.5 2.5 3.5 2.2 112 chr3L 3584592 intron Eip63E + chr3L 3584648 intron Eip63E + chr3L 3584704 intron Eip63E + chr3L_10_3580001 chr3L_3580001 RAL-783 712 chr3L 3601222 3601236 chr3L 3601289 3601319 4 74 1.0 1.0 1.0 2.0 97 chr3L 3601222 intron Eip63E + chr3L 3601270 intron Eip63E + chr3L 3601319 intron Eip63E + chr3L_4_3600001 chr3L_3600001 RAL-783 713 chr3L 3601301 3601331 chr3L 3606612 3606639 copia 8 5310 1.0 2.5 1.8 2.9 5338 chr3L 3601301 intron Eip63E + chr3L 3603970 intron Eip63E + chr3L 3606639 intron Eip63E + chr3L_8_3600001 chr3L_3600001 RAL-783 714 chr3L 3833740 3833757 chr3L 3833981 3833998 pogo 5 241 1.5 0.5 1.0 2.5 258 chr3L 3833740 intron enc + chr3L 3833869 intron enc + chr3L 3833998 intron enc + chr3L_5_3830001 chr3L_3830001 RAL-783 715 chr3L 3872286 3872299 chr3L 3872378 3872392 4 93 0.0 3.0 1.5 1.6 106 chr3L 3872286 intergenic not near genes chr3L 3872339 intergenic not near genes chr3L 3872392 intergenic not near genes chr3L_4_3870001 chr3L_3870001 RAL-783 716 chr3L 3890972 3890980 chr3L 3891053 3891061 4 81 5.0 0.0 2.5 1.1 89 chr3L 3890972 intergenic not near genes chr3L 3891016 intergenic not near genes chr3L 3891061 intergenic not near genes chr3L_4_3890001 chr3L_3890001 RAL-783 717 chr3L 4015741 4015767 chr3L 4015824 4015850 4 83 2.5 3.5 3.0 1.0 109 chr3L 4015741 intergenic not near genes chr3L 4015796 intergenic not near genes chr3L 4015850 intergenic not near genes chr3L_4_4015001 chr3L_4015001 RAL-783 718 chr3L 4056927 4056944 chr3L 4057007 4057024 5 80 3.5 3.5 3.5 1.1 97 chr3L 4056927 intron CG1136 + chr3L 4056976 intron CG1136 + chr3L 4057024 intron CG1136 + chr3L_5_4055001 chr3L_4055001 RAL-783 719 chr3L 4328739 4328763 chr3L 4336237 4336259 412 5 7498 2.5 2.0 2.2 1.6 7520 chr3L 4328739 intron Cip4 - chr3L 4332499 intron Cip4 - chr3L 4336259 intron Cip4 - chr3L_5_4330001 chr3L_4330001 RAL-783 720 chr3L 4342416 4342437 chr3L 4342489 4342511 8 74 5.0 0.0 2.5 2.3 95 chr3L 4342416 intron Cip4 - chr3L 4342464 intron Cip4 - chr3L 4342511 intron Cip4 - chr3L_8_4340001 chr3L_4340001 RAL-783 721 chr3L 4347833 4347857 chr3L 4347919 4347943 7 86 3.0 5.0 4.0 1.4 110 chr3L 4347833 intron Cip4 - chr3L 4347888 intron Cip4 - chr3L 4347943 intron Cip4 - chr3L_7_4345001 chr3L_4345001 RAL-783 722 chr3L 4364208 4364230 chr3L 4364297 4364319 5 89 0.0 1.0 0.5 3.3 111 chr3L 4364208 intergenic Cip4 -,mRpS6 + chr3L 4364264 intergenic Cip4 -,mRpS6 + chr3L 4364319 intergenic Cip4 -,mRpS6 + chr3L_5_4360001 chr3L_4360001 RAL-783 723 chr3L 4580304 4580338 chr3L 4580390 4580424 7 85 2.5 2.5 2.5 2.0 120 chr3L 4580304 intron CG42540 + chr3L 4580364 intron CG42540 + chr3L 4580424 intron CG42540 + chr3L_7_4580001 chr3L_4580001 RAL-783 724 chr3L 4629611 4629635 chr3L 4629781 4629805 5 169 0.0 1.5 0.8 2.8 194 chr3L 4629611 3` UTR axo - chr3L 4629708 3` UTR axo - chr3L 4629805 3` UTR axo - chr3L_5_4625001 chr3L_4625001 RAL-783 725 chr3L 4748707 4748732 chr3L 4748793 4748823 11 90 2.0 1.0 1.5 4.4 116 chr3L 4748707 intron RhoGEF64C + chr3L 4748765 intron RhoGEF64C + chr3L 4748823 intron RhoGEF64C + chr3L_11_4745001 chr3L_4745001 RAL-783 726 chr3L 4784965 4784990 chr3L 4785172 4785199 5 209 1.5 0.5 1.0 2.5 234 chr3L 4784965 intron RhoGEF64C + chr3L 4785082 intron RhoGEF64C + chr3L 4785199 intron RhoGEF64C + chr3L_5_4785001 chr3L_4785001 RAL-783 727 chr3L 4858301 4858332 chr3L 4858391 4858421 8 86 4.0 1.0 2.5 2.3 120 chr3L 4858301 intergenic not near genes chr3L 4858361 intergenic not near genes chr3L 4858421 intergenic not near genes chr3L_8_4855001 chr3L_4855001 RAL-783 728 chr3L 4901130 4901159 chr3L 4907320 4907346 diver 9 6187 2.0 1.5 1.8 3.2 6216 chr3L 4901130 intergenic CG13704 + chr3L 4904238 intergenic not near genes chr3L 4907346 intergenic not near genes chr3L_9_4900001 chr3L_4900001 RAL-783 729 chr3L 5034157 5034176 chr3L 5043309 5043328 roo 4 9152 3.5 0.0 1.8 1.4 9171 chr3L 5034157 intron Con - chr3L 5038742 intron Con - chr3L 5043328 intron Con - chr3L_4_5035001 chr3L_5035001 RAL-783 730 chr3L 5104490 5104508 chr3L 5124624 5124641 4 20134 2.0 3.0 2.5 1.1 20151 chr3L 5104490 intergenic not near genes chr3L 5114566 intergenic not near genes chr3L 5124641 intergenic not near genes chr3L_4_5110001 chr3L_5110001 RAL-783 731 chr3L 5498415 5498428 chr3L 5498492 5498505 8 77 0.5 4.0 2.2 2.5 90 chr3L 5498415 exon blanks - chr3L 5498460 exon blanks - chr3L 5498505 exon blanks - chr3L_8_5495001 chr3L_5495001 RAL-783 732 chr3L 5701828 5701851 chr3L 5701957 5701985 8 132 4.5 0.0 2.2 2.5 157 chr3L 5701828 intron sif + chr3L 5701906 intron sif + chr3L 5701985 intron sif + chr3L_8_5700001 chr3L_5700001 RAL-783 733 chr3L 5902570 5902589 chr3L 5902655 5902674 4 85 3.0 3.5 3.2 1.0 104 chr3L 5902570 intergenic QC -,CG32413 - chr3L 5902622 intergenic QC -,CG32413 - chr3L 5902674 intergenic CG32413 -,QC - chr3L_4_5900001 chr3L_5900001 RAL-783 734 chr3L 5908077 5908092 chr3L 5908157 5908172 4 80 2.0 0.5 1.2 1.8 95 chr3L 5908077 intron CG13288 + chr3L 5908124 intron CG13288 + chr3L 5908172 intron CG13288 + chr3L_4_5905001 chr3L_5905001 RAL-783 735 chr3L 5910032 5910056 chr3L 5910273 5910297 pogo 7 241 1.0 3.0 2.0 2.3 265 chr3L 5910032 intron CG13288 + chr3L 5910164 intron CG13288 + chr3L 5910297 intron CG13288 + chr3L_7_5910001 chr3L_5910001 RAL-783 736 chr3L 5926318 5926347 chr3L 5926507 5926533 BS 10 186 2.0 3.5 2.8 2.6 215 chr3L 5926318 intron Vap-33B + chr3L 5926426 intron Vap-33B + chr3L 5926533 intron Vap-33B + chr3L_10_5925001 chr3L_5925001 RAL-783 737 chr3L 6116698 6116716 chr3L 6116781 6116798 4 83 2.0 4.0 3.0 1.0 100 chr3L 6116698 intron Ets65A + chr3L 6116748 intron Ets65A + chr3L 6116798 intron Ets65A + chr3L_4_6115001 chr3L_6115001 RAL-783 738 chr3L 6159881 6159897 chr3L 6159971 6159977 5 88 5.0 0.5 2.8 1.3 96 chr3L 6159881 intergenic not near genes chr3L 6159929 intergenic not near genes chr3L 6159977 intergenic not near genes chr3L_5_6155001 chr3L_6155001 RAL-783 739 chr3L 6220915 6220948 chr3L 6230066 6230099 roo 10 9151 2.5 3.5 3.0 2.5 9184 chr3L 6220915 5` UTR pncr008:3L + chr3L 6225507 intergenic not near genes chr3L 6230099 intergenic not near genes chr3L_10_6225001 chr3L_6225001 RAL-783 740 chr3L 6293766 6293788 chr3L 6293848 6293870 5 82 1.0 1.5 1.2 2.3 104 chr3L 6293766 intergenic not near genes chr3L 6293818 intergenic not near genes chr3L 6293870 intergenic not near genes chr3L_5_6290001 chr3L_6290001 RAL-783 741 chr3L 6353379 6353408 chr3L 6353456 6353477 5 77 3.5 3.5 3.5 1.1 98 chr3L 6353379 intergenic not near genes chr3L 6353428 intergenic not near genes chr3L 6353477 intergenic not near genes chr3L_5_6350001 chr3L_6350001 RAL-783 742 chr3L 6405657 6405686 chr3L 6432121 6432150 roo 5 26464 3.5 1.0 2.2 1.6 26493 chr3L 6405657 intron CG42747 + chr3L 6418904 intron CG42747 + chr3L 6432150 intron CG42747 + chr3L_5_6415001 chr3L_6415001 RAL-783 743 chr3L 6561224 6561247 chr3L 6561429 6561451 5 205 2.5 3.5 3.0 1.2 227 chr3L 6561224 intron CG18769 + chr3L 6561338 intron CG18769 + chr3L 6561451 intron CG18769 + chr3L_5_6560001 chr3L_6560001 RAL-783 744 chr3L 6686416 6686430 chr3L 6686562 6686576 6 146 1.5 1.5 1.5 2.4 160 chr3L 6686416 intergenic not near genes chr3L 6686496 intergenic not near genes chr3L 6686576 intergenic not near genes chr3L_6_6685001 chr3L_6685001 RAL-783 745 chr3L 6781106 6781116 chr3L 6783144 6783154 Doc 4 2038 2.5 0.0 1.2 1.8 2048 chr3L 6781106 intergenic not near genes chr3L 6782130 intergenic not near genes chr3L 6783154 intergenic not near genes chr3L_4_6780001 chr3L_6780001 RAL-783 746 chr3L 6855935 6855940 chr3L 6860718 6860724 Doc 4 4784 3.5 0.5 2.0 1.3 4789 chr3L 6855935 intergenic not near genes chr3L 6858330 intergenic not near genes chr3L 6860724 intergenic not near genes chr3L_4_6855001 chr3L_6855001 RAL-783 747 chr3L 6887287 6887304 chr3L 6895246 6895261 roo 6 7958 0.5 2.0 1.2 2.7 7974 chr3L 6887287 intergenic not near genes chr3L 6891274 intergenic not near genes chr3L 6895261 intergenic not near genes chr3L_6_6890001 chr3L_6890001 RAL-783 748 chr3L 6922007 6922037 chr3L 6922095 6922125 7 86 2.5 2.5 2.5 2.0 118 chr3L 6922007 intergenic not near genes chr3L 6922066 intergenic not near genes chr3L 6922125 intergenic not near genes chr3L_7_6920001 chr3L_6920001 RAL-783 749 chr3L 6974508 6974521 chr3L 6974608 6974622 6 100 0.0 3.5 1.8 2.1 114 chr3L 6974508 intron Galphai - chr3L 6974565 intron Galphai - chr3L 6974622 intron Galphai - chr3L_6_6970001 chr3L_6970001 RAL-783 750 chr3L 7023404 7023423 chr3L 7023498 7023517 7 94 2.5 1.5 2.0 2.3 113 chr3L 7023404 intron Mp + chr3L 7023460 intron Mp + chr3L 7023517 intron Mp + chr3L_7_7020001 chr3L_7020001 RAL-783 751 chr3L 7079605 7079634 chr3L 7079682 7079711 4 76 1.0 1.5 1.2 1.8 106 chr3L 7079605 intergenic not near genes chr3L 7079658 intergenic not near genes chr3L 7079711 intergenic not near genes chr3L_4_7075001 chr3L_7075001 RAL-783 752 chr3L 7112583 7112606 chr3L 7112670 7112693 4 87 0.5 0.5 0.5 2.7 110 chr3L 7112583 intron form3 + chr3L 7112638 intron form3 + chr3L 7112693 intron form3 + chr3L_4_7110001 chr3L_7110001 RAL-783 753 chr3L 7153336 7153353 chr3L 7153412 7153429 7 76 1.5 3.0 2.2 2.2 93 chr3L 7153336 intron corn - chr3L 7153382 intron corn - chr3L 7153429 intron corn - chr3L_7_7150001 chr3L_7150001 RAL-783 754 chr3L 7244929 7244963 chr3L 7245021 7245054 11 90 3.5 0.5 2.0 3.7 125 chr3L 7244929 exon mei-P22 + chr3L 7244992 exon mei-P22 + chr3L 7245054 exon mei-P22 + chr3L_11_7240001 chr3L_7240001 RAL-783 755 chr3L 7257896 7257917 chr3L 7258141 7258158 9 244 1.5 4.0 2.8 2.4 262 chr3L 7257896 intron CG14830 - chr3L 7258027 intron CG14830 - chr3L 7258158 intron CG14830 - chr3L_9_7255001 chr3L_7255001 RAL-783 756 chr3L 7264893 7264911 chr3L 7264976 7264994 4 83 1.0 2.0 1.5 1.6 101 chr3L 7264893 intergenic not near genes chr3L 7264944 intergenic not near genes chr3L 7264994 intergenic not near genes chr3L_4_7260001 chr3L_7260001 RAL-783 757 chr3L 7328949 7328962 chr3L 7329030 7329042 4 81 4.5 2.0 3.2 1.0 93 chr3L 7328949 intergenic CG8602 -,CG42307 +,mus312 + chr3L 7328996 intergenic CG42307 +,mus312 +,CG8602 - chr3L 7329042 intergenic CG42307 +,mus312 +,CG8602 - chr3L_4_7325001 chr3L_7325001 RAL-783 758 chr3L 7377315 7377345 chr3L 7380420 7380450 297 6 3102 2.0 2.5 2.2 1.9 3135 chr3L 7377315 intron SMSr - chr3L 7378882 intron SMSr - chr3L 7380450 intron SMSr - chr3L_6_7375001 chr3L_7375001 RAL-783 759 chr3L 7460373 7460403 chr3L 7460457 7460487 4 84 1.0 1.0 1.0 2.0 114 chr3L 7460373 intergenic not near genes chr3L 7460430 intergenic not near genes chr3L 7460487 intergenic not near genes chr3L_4_7460001 chr3L_7460001 RAL-783 760 chr3L 7498772 7498790 chr3L 7503549 7503567 F-element 4 4777 1.5 3.5 2.5 1.1 4795 chr3L 7498772 5` UTR CG8539 - chr3L 7501170 intergenic not near genes chr3L 7503567 intergenic not near genes chr3L_4_7500001 chr3L_7500001 RAL-783 761 chr3L 7574709 7574722 chr3L 7574794 7574807 4 85 2.0 0.0 1.0 2.0 98 chr3L 7574709 intergenic not near genes chr3L 7574758 intergenic not near genes chr3L 7574807 intergenic not near genes chr3L_4_7570001 chr3L_7570001 RAL-783 762 chr3L 7752142 7752173 chr3L 7752249 7752280 11 107 3.0 4.0 3.5 2.4 138 chr3L 7752142 intron CG32373 + chr3L 7752211 intron CG32373 + chr3L 7752280 intron CG32373 + chr3L_11_7750001 chr3L_7750001 RAL-783 763 chr3L 7786409 7786443 chr3L 7786492 7786522 11 77 2.5 4.0 3.2 2.6 113 chr3L 7786409 intron CG32369 - chr3L 7786466 intron CG32369 - chr3L 7786522 intron CG32369 - chr3L_11_7785001 chr3L_7785001 RAL-783 764 chr3L 7793712 7793731 chr3L 7800764 7800783 297 4 7052 4.0 3.0 3.5 0.9 7071 chr3L 7793712 intron CG32369 - chr3L 7797248 intron CG32369 - chr3L 7800783 intron CG32369 - chr3L_4_7795001 chr3L_7795001 RAL-783 765 chr3L 7886512 7886544 chr3L 7889030 7889062 Stalker4 6 2518 1.5 1.0 1.2 2.7 2550 chr3L 7886512 intron CG32365 + chr3L 7887787 intron CG32365 + chr3L 7889062 intron CG32365 + chr3L_6_7885001 chr3L_7885001 RAL-783 766 chr3L 7985361 7985392 chr3L 7987689 7987720 NOF 10 2328 4.5 3.5 4.0 2.0 2359 chr3L 7985361 intron nmo + chr3L 7986540 intron nmo + chr3L 7987720 intron nmo + chr3L_10_7985001 chr3L_7985001 RAL-783 767 chr3L 8226725 8226749 chr3L 8226824 8226848 4 99 0.5 0.0 0.2 3.3 123 chr3L 8226725 intergenic not near genes chr3L 8226786 intergenic not near genes chr3L 8226848 intergenic not near genes chr3L_4_8225001 chr3L_8225001 RAL-783 768 chr3L 8295805 8295825 chr3L 8295963 8295983 7 158 2.0 3.5 2.8 1.8 178 chr3L 8295805 intergenic CG7201 - chr3L 8295894 intergenic not near genes chr3L 8295983 intergenic not near genes chr3L_7_8295001 chr3L_8295001 RAL-783 769 chr3L 8519427 8519451 chr3L 8519527 8519551 8 100 1.5 3.0 2.2 2.5 124 chr3L 8519427 intron GstO3 + chr3L 8519489 intron GstO3 + chr3L 8519551 exon GstO3 + chr3L_8_8515001 chr3L_8515001 RAL-783 770 chr3L 8765615 8765643 chr3L 8765713 8765740 6 98 2.5 2.5 2.5 1.7 125 chr3L 8765615 intron Fhos + chr3L 8765678 intron Fhos + chr3L 8765740 intron Fhos + chr3L_6_8765001 chr3L_8765001 RAL-783 771 chr3L 8814813 8814832 chr3L 8814923 8814947 4 110 0.5 1.5 1.0 2.0 134 chr3L 8814813 intergenic not near genes chr3L 8814880 intergenic not near genes chr3L 8814947 intergenic not near genes chr3L_4_8810001 chr3L_8810001 RAL-783 772 chr3L 8839730 8839749 chr3L 8839810 8839828 5 79 3.0 0.0 1.5 2.0 98 chr3L 8839730 intron dally + chr3L 8839779 intron dally + chr3L 8839828 intron dally + chr3L_5_8835001 chr3L_8835001 RAL-783 773 chr3L 8884408 8884422 chr3L 8884606 8884620 6 198 2.0 0.0 1.0 3.0 212 chr3L 8884408 intron dally + chr3L 8884514 intron dally + chr3L 8884620 intron dally + chr3L_6_8880001 chr3L_8880001 RAL-783 774 chr3L 9076926 9076950 chr3L 9084486 9084502 412 8 7558 6.0 6.0 6.0 1.1 7576 chr3L 9076926 exon Tequila + chr3L 9080714 intron Tequila + chr3L 9084502 exon Tequila + chr3L_8_9080001 chr3L_9080001 RAL-783 775 chr3L 9130557 9130580 chr3L 9134317 9134341 412 14 3759 4.5 2.5 3.5 3.1 3784 chr3L 9130557 intergenic bol - chr3L 9132449 intergenic not near genes chr3L 9134341 intergenic Dhpr + chr3L_14_9130001 chr3L_9130001 RAL-783 776 chr3L 9219247 9219279 chr3L 9219919 9219930 jockey 5 662 3.0 3.5 3.2 1.2 683 chr3L 9219247 intergenic not near genes chr3L 9219588 intergenic not near genes chr3L 9219930 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-783 777 chr3L 9248354 9248389 chr3L 9248439 9248472 15 83 2.0 1.0 1.5 6.0 118 chr3L 9248354 intergenic not near genes chr3L 9248413 intergenic not near genes chr3L 9248472 intergenic not near genes chr3L_15_9245001 chr3L_9245001 RAL-783 778 chr3L 9344204 9344225 chr3L 9344282 9344303 6 78 0.0 4.5 2.2 1.9 99 chr3L 9344204 intron PGRP-LC + chr3L 9344254 intron PGRP-LC + chr3L 9344303 intron PGRP-LC + chr3L_6_9340001 chr3L_9340001 RAL-783 779 chr3L 9415241 9415259 chr3L 9415667 9415684 6 425 7.0 3.0 5.0 1.0 443 chr3L 9415241 intron CG3967 - chr3L 9415462 exon CG3967 - chr3L 9415684 intron CG3967 - chr3L_6_9415001 chr3L_9415001 RAL-783 780 chr3L 9411921 9411937 chr3L 9415587 9415603 4 3666 17.5 4.5 11.0 0.3 3682 chr3L 9411921 exon CG3689 + chr3L 9413762 3` UTR CG3967 - chr3L 9415603 intron CG3967 - chr3L_4_9410001 chr3L_9410001 RAL-783 781 chr3L 9443531 9443541 chr3L 9445314 9445323 S-element 5 1782 2.0 3.5 2.8 1.3 1792 chr3L 9443531 intron CG33926 + chr3L 9444427 intron CG33926 + chr3L 9445323 intron CG33926 + chr3L_5_9440001 chr3L_9440001 RAL-783 782 chr3L 9510911 9510952 chr3L 9511004 9511030 7 81 0.0 0.5 0.2 5.8 119 chr3L 9510911 intron RpS9 - chr3L 9510970 intron RpS9 - chr3L 9511030 intron RpS9 - chr3L_7_9510001 chr3L_9510001 RAL-783 783 chr3L 9533753 9533772 chr3L 9541313 9541332 412 4 7560 2.0 5.5 3.8 0.8 7579 chr3L 9533753 intergenic not near genes chr3L 9537542 intergenic not near genes chr3L 9541332 intergenic not near genes chr3L_4_9535001 chr3L_9535001 RAL-783 784 chr3L 9558046 9558062 chr3L 9558133 9558141 6 85 2.0 1.5 1.8 2.1 95 chr3L 9558046 intron CG42673 + chr3L 9558094 intron CG42673 + chr3L 9558141 intron CG42673 + chr3L_6_9555001 chr3L_9555001 RAL-783 785 chr3L 9575909 9575942 chr3L 9580985 9581022 jockey 7 5077 5.0 2.0 3.5 1.6 5113 chr3L 9575909 intron CG42673 + chr3L 9578466 intron CG42673 + chr3L 9581022 intron CG42673 + chr3L_7_9575001 chr3L_9575001 RAL-783 786 chr3L 9829048 9829078 chr3L 9829130 9829160 12 81 3.0 2.0 2.5 3.4 112 chr3L 9829048 intron CG43897 + chr3L 9829104 intron CG43897 + chr3L 9829160 intron CG43897 + chr3L_12_9825001 chr3L_9825001 RAL-783 787 chr3L 9848516 9848535 chr3L 9848592 9848609 4 76 2.0 0.0 1.0 2.0 93 chr3L 9848516 intron RasGAP1 - chr3L 9848562 intron RasGAP1 - chr3L 9848609 intron RasGAP1 - chr3L_4_9845001 chr3L_9845001 RAL-783 788 chr3L 9871206 9871216 chr3L 9871302 9871310 4 94 2.0 3.5 2.8 1.1 104 chr3L 9871206 intergenic not near genes chr3L 9871258 intergenic not near genes chr3L 9871310 intergenic not near genes chr3L_4_9870001 chr3L_9870001 RAL-783 789 chr3L 9918879 9918914 chr3L 9918974 9919009 8 95 1.5 1.5 1.5 3.2 130 chr3L 9918879 intron CG34356 + chr3L 9918944 intron CG34356 + chr3L 9919009 intron CG34356 + chr3L_8_9915001 chr3L_9915001 RAL-783 790 chr3L 9929670 9929701 chr3L 9938450 9938460 roo 5 8775 1.5 5.5 3.5 1.1 8790 chr3L 9929670 intron CG34356 + chr3L 9934065 intron CG34356 + chr3L 9938460 intron CG34356 + chr3L_5_9930001 chr3L_9930001 RAL-783 791 chr3L 10014281 10014306 chr3L 10014429 10014454 9 147 3.0 1.5 2.2 2.8 173 chr3L 10014281 intron dpr6 + chr3L 10014368 intron dpr6 + chr3L 10014454 intron dpr6 + chr3L_9_10010001 chr3L_10010001 RAL-783 792 chr3L 10032552 10032561 chr3L 10032638 10032648 4 86 0.5 0.5 0.5 2.7 96 chr3L 10032552 intron dpr6 + chr3L 10032600 intron dpr6 + chr3L 10032648 intron dpr6 + chr3L_4_10030001 chr3L_10030001 RAL-783 793 chr3L 10106522 10106549 chr3L 10108768 10108794 7 2245 15.5 20.5 18.0 0.4 2272 chr3L 10106522 intron dpr6 + chr3L 10107658 intron dpr6 + chr3L 10108794 intron dpr6 + chr3L_7_10105001 chr3L_10105001 RAL-783 794 chr3L 10219777 10219811 chr3L 10220289 10220309 5 505 2.0 2.5 2.2 1.6 532 chr3L 10219777 exon CG32055 - chr3L 10220043 exon CG32055 - chr3L 10220309 intergenic CG32055 -,scramb1 - chr3L_5_10220001 chr3L_10220001 RAL-783 795 chr3L 10298674 10298688 chr3L 10298761 10298775 5 87 0.5 1.0 0.8 2.8 101 chr3L 10298674 intergenic not near genes chr3L 10298724 intergenic not near genes chr3L 10298775 intergenic not near genes chr3L_5_10295001 chr3L_10295001 RAL-783 796 chr3L 10308761 10308775 chr3L 10308837 10308852 6 77 3.0 2.5 2.8 1.6 91 chr3L 10308761 intergenic not near genes chr3L 10308806 intergenic not near genes chr3L 10308852 intergenic not near genes chr3L_6_10305001 chr3L_10305001 RAL-783 797 chr3L 10310357 10310378 chr3L 10310451 10310475 5 96 0.5 1.5 1.0 2.5 118 chr3L 10310357 intergenic not near genes chr3L 10310416 intergenic not near genes chr3L 10310475 intergenic not near genes chr3L_5_10310001 chr3L_10310001 RAL-783 798 chr3L 10414952 10414977 chr3L 10417324 10417347 Doc 9 2368 1.5 1.0 1.2 4.1 2395 chr3L 10414952 intergenic CG12362 + chr3L 10416150 intergenic not near genes chr3L 10417347 intergenic not near genes chr3L_9_10415001 chr3L_10415001 RAL-783 799 chr3L 10454565 10454582 chr3L 10454649 10454650 6 82 2.5 1.0 1.8 2.1 85 chr3L 10454565 intergenic not near genes chr3L 10454608 intergenic not near genes chr3L 10454650 intergenic not near genes chr3L_6_10450001 chr3L_10450001 RAL-783 800 chr3L 10518583 10518607 chr3L 10518718 10518741 6 135 0.0 1.0 0.5 4.0 158 chr3L 10518583 intron A2bp1 + chr3L 10518662 intron A2bp1 + chr3L 10518741 intron A2bp1 + chr3L_6_10515001 chr3L_10515001 RAL-783 801 chr3L 10601211 10601229 chr3L 10601304 10601322 5 92 0.5 3.0 1.8 1.8 111 chr3L 10601211 intergenic not near genes chr3L 10601266 intergenic not near genes chr3L 10601322 intergenic not near genes chr3L_5_10600001 chr3L_10600001 RAL-783 802 chr3L 10658098 10658206 chr3L 10658175 10658333 7 119 0.5 0.5 0.5 4.7 235 chr3L 10658098 intron CG32066 - chr3L 10658216 intron CG32066 - chr3L 10658333 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-783 803 chr3L 10694919 10694933 chr3L 10695011 10695025 4 92 3.0 3.0 3.0 1.0 106 chr3L 10694919 intron NijA - chr3L 10694972 intron NijA - chr3L 10695025 exon NijA - chr3L_4_10690001 chr3L_10690001 RAL-783 804 chr3L 10747096 10747116 chr3L 10747172 10747193 5 77 2.0 0.5 1.2 2.3 97 chr3L 10747096 intergenic not near genes chr3L 10747144 intergenic not near genes chr3L 10747193 intergenic not near genes chr3L_5_10745001 chr3L_10745001 RAL-783 805 chr3L 10937849 10937877 chr3L 10937926 10937954 5 77 2.5 1.0 1.8 1.8 105 chr3L 10937849 intergenic not near genes chr3L 10937902 intergenic not near genes chr3L 10937954 intergenic not near genes chr3L_5_10935001 chr3L_10935001 RAL-783 806 chr3L 11087061 11087090 chr3L 11088849 11088879 S-element 5 1788 1.5 4.0 2.8 1.3 1818 chr3L 11087061 intron JIL-1 - chr3L 11087970 intron JIL-1 - chr3L 11088879 intron JIL-1 - chr3L_5_11085001 chr3L_11085001 RAL-783 807 chr3L 11127212 11127292 chr3L 11127287 11127369 4 76 0.0 0.0 0.0 4.0 157 chr3L 11127212 intron CG42575 + chr3L 11127290 intron CG42575 + chr3L 11127369 intron CG42575 + chr3L_4_11125001 chr3L_11125001 RAL-783 808 chr3L 11135529 11135803 chr3L 11135759 11135888 10 112 0.5 1.0 0.8 5.6 359 chr3L 11135529 intergenic CG14143 + chr3L 11135708 intergenic CG14143 +,CG32082 + chr3L 11135888 intergenic CG32082 +,CG14143 + chr3L_10_11135001 chr3L_11135001 RAL-783 809 chr3L 11145547 11145554 chr3L 11145637 11145644 4 90 0.0 3.0 1.5 1.6 97 chr3L 11145547 intron CG32082 + chr3L 11145596 intron CG32082 + chr3L 11145644 intron CG32082 + chr3L_4_11145001 chr3L_11145001 RAL-783 810 chr3L 11277464 11277480 chr3L 11278456 11278475 Rt1a 4 994 1.0 2.5 1.8 1.4 1011 chr3L 11277464 intergenic not near genes chr3L 11277970 intergenic not near genes chr3L 11278475 intergenic not near genes chr3L_4_11275001 chr3L_11275001 RAL-783 811 chr3L 11329693 11329726 chr3L 11332894 11332931 jockey 6 3204 6.5 1.5 4.0 1.2 3238 chr3L 11329693 intergenic not near genes chr3L 11331312 intergenic not near genes chr3L 11332931 intergenic not near genes chr3L_6_11330001 chr3L_11330001 RAL-783 812 chr3L 11379327 11379362 chr3L 11379405 11379439 12 78 0.0 5.0 2.5 3.4 112 chr3L 11379327 intergenic not near genes chr3L 11379383 intergenic not near genes chr3L 11379439 intergenic not near genes chr3L_12_11375001 chr3L_11375001 RAL-783 813 chr3L 11435561 11435587 chr3L 11435730 11435756 12 168 2.0 2.5 2.2 3.8 195 chr3L 11435561 intergenic CG6149 -,CR44548 + chr3L 11435658 5` UTR CR44548 + chr3L 11435756 5` UTR CR44548 + chr3L_12_11435001 chr3L_11435001 RAL-783 814 chr3L 11579560 11579585 chr3L 11579665 11579691 9 106 1.5 4.0 2.8 2.4 131 chr3L 11579560 intergenic CG43390 - chr3L 11579626 intergenic CG43390 - chr3L 11579691 intergenic CG43390 - chr3L_9_11575001 chr3L_11575001 RAL-783 815 chr3L 11587921 11587955 chr3L 11587997 11588031 5 76 1.0 3.5 2.2 1.6 110 chr3L 11587921 intergenic rt - chr3L 11587976 intergenic rt - chr3L 11588031 intergenic rt - chr3L_5_11585001 chr3L_11585001 RAL-783 816 chr3L 11588745 11588758 chr3L 11588897 11588914 4 155 1.5 7.0 4.2 0.8 169 chr3L 11588745 intergenic not near genes chr3L 11588830 intergenic not near genes chr3L 11588914 intergenic not near genes chr3L_4_11585001 chr3L_11585001 RAL-783 817 chr3L 11723096 11723114 chr3L 11727891 11727909 Doc 4 4795 1.5 3.0 2.2 1.2 4813 chr3L 11723096 3` UTR Bmcp + chr3L 11725502 intron Bmcp + chr3L 11727909 3` UTR Bmcp + chr3L_4_11725001 chr3L_11725001 RAL-783 818 chr3L 11864561 11864582 chr3L 11865851 11865877 pogo 8 1294 3.0 2.0 2.5 2.3 1316 chr3L 11864561 intron CG44837 - chr3L 11865219 intron CG44837 - chr3L 11865877 intron CG44837 - chr3L_8_11865001 chr3L_11865001 RAL-783 819 chr3L 11905123 11905143 chr3L 11905205 11905225 5 82 1.0 2.5 1.8 1.8 102 chr3L 11905123 intron CG44837 - chr3L 11905174 intron CG44837 - chr3L 11905225 intron CG44837 - chr3L_5_11905001 chr3L_11905001 RAL-783 820 chr3L 11938877 11938896 chr3L 11938957 11938985 7 84 4.0 4.5 4.2 1.3 108 chr3L 11938877 intergenic CG44837 - chr3L 11938931 intergenic CG44837 - chr3L 11938985 intergenic CG44837 - chr3L_7_11935001 chr3L_11935001 RAL-783 821 chr3L 11984574 11984590 chr3L 11984665 11984681 5 90 3.0 0.0 1.5 2.0 107 chr3L 11984574 intergenic CG6938 + chr3L 11984628 intergenic CG6938 + chr3L 11984681 intergenic CG6938 + chr3L_5_11980001 chr3L_11980001 RAL-783 822 chr3L 12034885 12034911 chr3L 12034962 12034988 5 77 2.5 0.0 1.2 2.3 103 chr3L 12034885 intron rols - chr3L 12034936 intron rols - chr3L 12034988 intron rols - chr3L_5_12030001 chr3L_12030001 RAL-783 823 chr3L 12413045 12413073 chr3L 12413121 12413151 8 78 4.0 0.5 2.2 2.5 106 chr3L 12413045 intron CG32103 - chr3L 12413098 intron CG32103 - chr3L 12413151 intron CG32103 - chr3L_8_12410001 chr3L_12410001 RAL-783 824 chr3L 12541528 12541539 chr3L 12541612 12541623 4 84 0.0 0.0 0.0 4.0 95 chr3L 12541528 intron sowah - chr3L 12541576 intron sowah - chr3L 12541623 intron sowah - chr3L_4_12540001 chr3L_12540001 RAL-783 825 chr3L 12612577 12612608 chr3L 12612670 12612700 7 92 2.0 4.0 3.0 1.8 123 chr3L 12612577 intron caup + chr3L 12612638 intron caup + chr3L 12612700 intron caup + chr3L_7_12610001 chr3L_12610001 RAL-783 826 chr3L 12720332 12720360 chr3L 12720417 12720442 6 84 0.5 1.0 0.8 3.3 110 chr3L 12720332 intergenic not near genes chr3L 12720387 intergenic not near genes chr3L 12720442 intergenic not near genes chr3L_6_12720001 chr3L_12720001 RAL-783 827 chr3L 12874933 12874960 chr3L 12877225 12877252 jockey 5 2292 0.5 1.0 0.8 2.8 2319 chr3L 12874933 intergenic not near genes chr3L 12876092 intergenic not near genes chr3L 12877252 intergenic not near genes chr3L_5_12875001 chr3L_12875001 RAL-783 828 chr3L 12894800 12894816 chr3L 12894878 12894894 5 78 5.0 5.5 5.2 0.8 94 chr3L 12894800 intergenic CG14118 + chr3L 12894847 intergenic CG14118 + chr3L 12894894 intergenic CG14118 + chr3L_5_12890001 chr3L_12890001 RAL-783 829 chr3L 12919285 12919302 chr3L 12924745 12924775 Rt1c 9 5469 5.5 2.0 3.8 1.9 5490 chr3L 12919285 intergenic not near genes chr3L 12922030 intergenic not near genes chr3L 12924775 intergenic not near genes chr3L_9_12920001 chr3L_12920001 RAL-783 830 chr3L 12929731 12929743 chr3L 12930047 12930058 4 316 0.0 3.0 1.5 1.6 327 chr3L 12929731 intergenic not near genes chr3L 12929894 intergenic not near genes chr3L 12930058 intergenic not near genes chr3L_4_12925001 chr3L_12925001 RAL-783 831 chr3L 12957791 12957820 chr3L 12962271 12962302 copia 6 4482 0.5 3.5 2.0 2.0 4511 chr3L 12957791 intergenic not near genes chr3L 12960046 intergenic not near genes chr3L 12962302 intergenic not near genes chr3L_6_12960001 chr3L_12960001 RAL-783 832 chr3L 12968302 12968328 chr3L 12968916 12968921 8 611 2.0 0.5 1.2 3.6 619 chr3L 12968302 intergenic not near genes chr3L 12968612 intergenic not near genes chr3L 12968921 intergenic not near genes chr3L_8_12965001 chr3L_12965001 RAL-783 833 chr3L 13056455 13056734 chr3L 13056612 13056817 4 99 0.5 0.0 0.2 3.3 362 chr3L 13056455 intergenic not near genes chr3L 13056636 intergenic not near genes chr3L 13056817 intergenic not near genes chr3L_4_13055001 chr3L_13055001 RAL-783 834 chr3L 13085054 13085086 chr3L 13085133 13085165 8 79 0.5 0.0 0.2 6.7 111 chr3L 13085054 intergenic not near genes chr3L 13085110 intergenic not near genes chr3L 13085165 intergenic not near genes chr3L_8_13085001 chr3L_13085001 RAL-783 835 chr3L 13147378 13147401 chr3L 13147455 13147479 4 78 1.0 2.0 1.5 1.6 101 chr3L 13147378 intergenic not near genes chr3L 13147428 intergenic not near genes chr3L 13147479 intergenic not near genes chr3L_4_13145001 chr3L_13145001 RAL-783 836 chr3L 13182449 13182462 chr3L 13182527 13182540 4 78 7.5 0.0 3.8 0.8 91 chr3L 13182449 intergenic not near genes chr3L 13182494 intergenic not near genes chr3L 13182540 intergenic not near genes chr3L_4_13180001 chr3L_13180001 RAL-783 837 chr3L 13183328 13183351 chr3L 13183405 13183424 7 76 3.5 0.5 2.0 2.3 96 chr3L 13183328 intergenic not near genes chr3L 13183376 intergenic not near genes chr3L 13183424 intergenic not near genes chr3L_7_13180001 chr3L_13180001 RAL-783 838 chr3L 13265183 13265218 chr3L 13265261 13265285 11 77 1.5 4.0 2.8 2.9 102 chr3L 13265183 5` UTR caps + chr3L 13265234 5` UTR caps + chr3L 13265285 5` UTR caps + chr3L_11_13265001 chr3L_13265001 RAL-783 839 chr3L 13265983 13266000 chr3L 13266312 13266329 5 329 2.5 10.0 6.2 0.7 346 chr3L 13265983 intron caps + chr3L 13266156 intron caps + chr3L 13266329 intron caps + chr3L_5_13265001 chr3L_13265001 RAL-783 840 chr3L 13296522 13296533 chr3L 13296611 13296624 5 91 2.0 1.0 1.5 2.0 102 chr3L 13296522 intergenic Sfp70A4 -,CR45253 + chr3L 13296573 3` UTR Sfp70A4 - chr3L 13296624 3` UTR Sfp70A4 - chr3L_5_13295001 chr3L_13295001 RAL-783 841 chr3L 13400526 13400545 chr3L 13400602 13400621 4 76 1.0 1.0 1.0 2.0 95 chr3L 13400526 intron sens - chr3L 13400574 intron sens - chr3L 13400621 intron sens - chr3L_4_13400001 chr3L_13400001 RAL-783 842 chr3L 13525163 13525189 chr3L 13532959 13532984 roo 4 7796 4.5 5.5 5.0 0.7 7821 chr3L 13525163 intergenic not near genes chr3L 13529074 intergenic not near genes chr3L 13532984 intergenic not near genes chr3L_4_13525001 chr3L_13525001 RAL-783 843 chr3L 13629528 13629543 chr3L 13629639 13629654 6 111 4.5 1.5 3.0 1.5 126 chr3L 13629528 intron bru-3 - chr3L 13629591 intron bru-3 - chr3L 13629654 intron bru-3 - chr3L_6_13625001 chr3L_13625001 RAL-783 844 chr3L 13650543 13650573 chr3L 13650630 13650658 7 87 1.5 3.5 2.5 2.0 115 chr3L 13650543 intron bru-3 - chr3L 13650600 intron bru-3 - chr3L 13650658 intron bru-3 - chr3L_7_13650001 chr3L_13650001 RAL-783 845 chr3L 13740035 13740047 chr3L 13740125 13740138 5 91 2.0 4.5 3.2 1.2 103 chr3L 13740035 intron bru-3 - chr3L 13740086 intron bru-3 - chr3L 13740138 intron bru-3 - chr3L_5_13740001 chr3L_13740001 RAL-783 846 chr3L 13804566 13804576 chr3L 13822851 13822862 roo 5 18285 2.0 5.0 3.5 1.1 18296 chr3L 13804566 intergenic not near genes chr3L 13813714 intergenic not near genes chr3L 13822862 intergenic not near genes chr3L_5_13810001 chr3L_13810001 RAL-783 847 chr3L 13901578 13901591 chr3L 13901655 13901668 4 77 1.5 1.5 1.5 1.6 90 chr3L 13901578 intron dysc - chr3L 13901623 intron dysc - chr3L 13901668 intron dysc - chr3L_4_13900001 chr3L_13900001 RAL-783 848 chr3L 14099426 14099450 chr3L 14099516 14099540 7 90 1.0 3.0 2.0 2.3 114 chr3L 14099426 intergenic not near genes chr3L 14099483 intergenic not near genes chr3L 14099540 intergenic not near genes chr3L_7_14095001 chr3L_14095001 RAL-783 849 chr3L 14236061 14236072 chr3L 14236198 14236209 4 137 1.5 0.5 1.0 2.0 148 chr3L 14236061 intergenic CG34244 - chr3L 14236135 intergenic CG34244 -,CG7906 + chr3L 14236209 intergenic CG34244 -,CG7906 + chr3L_4_14235001 chr3L_14235001 RAL-783 850 chr3L 14245568 14245593 chr3L 14245662 14245686 1360 7 94 2.5 3.0 2.8 1.8 118 chr3L 14245568 3` UTR CR44561 - chr3L 14245627 3` UTR CR44561 - chr3L 14245686 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-783 851 chr3L 14282587 14282605 chr3L 14282667 14282685 8 78 3.0 5.5 4.2 1.5 98 chr3L 14282587 intron fz + chr3L 14282636 intron fz + chr3L 14282685 intron fz + chr3L_8_14280001 chr3L_14280001 RAL-783 852 chr3L 14295999 14296012 chr3L 14296478 14296498 roo 4 484 0.0 2.0 1.0 2.0 499 chr3L 14295999 intron fz + chr3L 14296248 intron fz + chr3L 14296498 intron fz + chr3L_4_14295001 chr3L_14295001 RAL-783 853 chr3L 14312042 14312056 chr3L 14316832 14316869 X-element 4 4802 1.0 0.5 0.8 2.2 4827 chr3L 14312042 exon fz + chr3L 14314456 intron fz + chr3L 14316869 intron fz + chr3L_4_14310001 chr3L_14310001 RAL-783 854 chr3L 14341414 14341427 chr3L 14341549 14341561 5 134 1.0 1.5 1.2 2.3 147 chr3L 14341414 intron fz + chr3L 14341488 intron fz + chr3L 14341561 intron fz + chr3L_5_14340001 chr3L_14340001 RAL-783 855 chr3L 14345905 14345939 chr3L 14346008 14346041 6 98 2.5 3.0 2.8 1.6 136 chr3L 14345905 intron fz + chr3L 14345973 intron fz + chr3L 14346041 intron fz + chr3L_6_14345001 chr3L_14345001 RAL-783 856 chr3L 14356520 14356553 chr3L 14356600 14356632 11 77 2.5 3.0 2.8 2.9 112 chr3L 14356520 intron fz + chr3L 14356576 intron fz + chr3L 14356632 intron fz + chr3L_11_14355001 chr3L_14355001 RAL-783 857 chr3L 14468455 14468476 chr3L 14473661 14473682 copia 5 5206 0.5 2.0 1.2 2.3 5227 chr3L 14468455 intron bbg - chr3L 14471068 intron bbg - chr3L 14473682 intron bbg - chr3L_5_14470001 chr3L_14470001 RAL-783 858 chr3L 14486019 14486049 chr3L 14486100 14486127 7 80 1.0 1.0 1.0 3.5 108 chr3L 14486019 intron bbg - chr3L 14486073 intron bbg - chr3L 14486127 intron bbg - chr3L_7_14485001 chr3L_14485001 RAL-783 859 chr3L 14522110 14522119 chr3L 14522209 14522218 5 99 1.5 2.0 1.8 1.8 108 chr3L 14522110 intron bbg - chr3L 14522164 intron bbg - chr3L 14522218 intron bbg - chr3L_5_14520001 chr3L_14520001 RAL-783 860 chr3L 14584165 14584182 chr3L 14584245 14584269 11 86 1.5 2.5 2.0 3.7 104 chr3L 14584165 intron HGTX - chr3L 14584217 intron HGTX - chr3L 14584269 intron HGTX - chr3L_11_14580001 chr3L_14580001 RAL-783 861 chr3L 14635705 14635731 chr3L 14635784 14635810 4 79 1.0 3.0 2.0 1.3 105 chr3L 14635705 intron dlp + chr3L 14635758 intron dlp + chr3L 14635810 intron dlp + chr3L_4_14635001 chr3L_14635001 RAL-783 862 chr3L 14660860 14660881 chr3L 14660946 14660974 5 91 2.0 3.0 2.5 1.4 114 chr3L 14660860 intron dlp + chr3L 14660917 intron dlp + chr3L 14660974 intron dlp + chr3L_5_14660001 chr3L_14660001 RAL-783 863 chr3L 14693301 14693329 chr3L 14693583 14693611 8 281 1.5 6.0 3.8 1.7 310 chr3L 14693301 intron ome + chr3L 14693456 intron ome + chr3L 14693611 intron ome + chr3L_8_14690001 chr3L_14690001 RAL-783 864 chr3L 14721191 14721208 chr3L 14723034 14723050 Rt1c 6 1842 6.0 3.5 4.8 1.0 1859 chr3L 14721191 intron ome + chr3L 14722120 intron ome + chr3L 14723050 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-783 865 chr3L 14961878 14961911 chr3L 14962228 14962261 7 350 1.5 2.0 1.8 2.5 383 chr3L 14961878 intergenic not near genes chr3L 14962070 intergenic not near genes chr3L 14962261 intergenic not near genes chr3L_7_14960001 chr3L_14960001 RAL-783 866 chr3L 15085055 15085084 chr3L 15086219 15086249 1360 7 1165 1.0 2.5 1.8 2.5 1194 chr3L 15085055 intron cp309 - chr3L 15085652 intron cp309 - chr3L 15086249 intron cp309 - chr3L_7_15085001 chr3L_15085001 RAL-783 867 chr3L 15209071 15209097 chr3L 15209155 15209181 5 85 0.5 2.5 1.5 2.0 110 chr3L 15209071 intergenic CG6888 + chr3L 15209126 intergenic not near genes chr3L 15209181 intergenic not near genes chr3L_5_15205001 chr3L_15205001 RAL-783 868 chr3L 15233558 15233580 chr3L 15233639 15233661 9 81 0.5 2.0 1.2 4.1 103 chr3L 15233558 intergenic not near genes chr3L 15233610 intergenic not near genes chr3L 15233661 intergenic not near genes chr3L_9_15230001 chr3L_15230001 RAL-783 869 chr3L 15281993 15282001 chr3L 15282134 15282142 4 141 0.5 0.5 0.5 2.7 149 chr3L 15281993 intergenic not near genes chr3L 15282068 intergenic not near genes chr3L 15282142 intergenic not near genes chr3L_4_15280001 chr3L_15280001 RAL-783 870 chr3L 15393665 15393690 chr3L 15393867 15393892 4 202 1.5 3.0 2.2 1.2 227 chr3L 15393665 intergenic not near genes chr3L 15393778 intergenic not near genes chr3L 15393892 intergenic not near genes chr3L_4_15390001 chr3L_15390001 RAL-783 871 chr3L 15422491 15422511 chr3L 15422576 15422596 4 85 0.5 0.5 0.5 2.7 105 chr3L 15422491 intergenic not near genes chr3L 15422544 intergenic not near genes chr3L 15422596 intergenic not near genes chr3L_4_15420001 chr3L_15420001 RAL-783 872 chr3L 15444654 15444682 chr3L 15444747 15444776 12 91 3.5 3.0 3.2 2.9 122 chr3L 15444654 intergenic not near genes chr3L 15444715 intergenic not near genes chr3L 15444776 intergenic not near genes chr3L_12_15440001 chr3L_15440001 RAL-783 873 chr3L 15466041 15466131 chr3L 15466123 15466221 5 89 0.0 0.0 0.0 5.0 180 chr3L 15466041 intergenic not near genes chr3L 15466131 intergenic not near genes chr3L 15466221 intergenic not near genes chr3L_5_15465001 chr3L_15465001 RAL-783 874 chr3L 15554944 15554952 chr3L 15556731 15556739 S-element 4 1787 1.0 2.5 1.8 1.4 1795 chr3L 15554944 intron AGO2 + chr3L 15555842 intron AGO2 + chr3L 15556739 intron AGO2 + chr3L_4_15555001 chr3L_15555001 RAL-783 875 chr3L 15633191 15633216 chr3L 15633271 15633293 5 79 0.5 1.5 1.0 2.5 102 chr3L 15633191 intron comm3 - chr3L 15633242 intron comm3 - chr3L 15633293 intron comm3 - chr3L_5_15630001 chr3L_15630001 RAL-783 876 chr3L 15735040 15735057 chr3L 15735119 15735136 4 80 3.0 2.5 2.8 1.1 96 chr3L 15735040 intergenic not near genes chr3L 15735088 intergenic not near genes chr3L 15735136 intergenic not near genes chr3L_4_15735001 chr3L_15735001 RAL-783 877 chr3L 15899221 15899254 chr3L 15899788 15899794 jockey 7 556 2.5 5.0 3.8 1.5 573 chr3L 15899221 intergenic pHCl - chr3L 15899508 intergenic pHCl - chr3L 15899794 intergenic sff - chr3L_7_15895001 chr3L_15895001 RAL-783 878 chr3L 15989256 15989274 chr3L 15989332 15989350 8 76 0.0 3.5 1.8 2.9 94 chr3L 15989256 intron Hip14 + chr3L 15989303 intron Hip14 + chr3L 15989350 intron Hip14 + chr3L_8_15985001 chr3L_15985001 RAL-783 879 chr3L 16184105 16184137 chr3L 16188924 16188945 X-element 11 4817 2.0 1.5 1.8 3.9 4840 chr3L 16184105 intergenic not near genes chr3L 16186525 intergenic not near genes chr3L 16188945 intergenic not near genes chr3L_11_16185001 chr3L_16185001 RAL-783 880 chr3L 16246562 16246578 chr3L 16250239 16250252 8 3674 20.5 10.0 15.2 0.5 3690 chr3L 16246562 intergenic not near genes chr3L 16248407 intergenic not near genes chr3L 16250252 3` UTR CG13055 - chr3L_8_16245001 chr3L_16245001 RAL-783 881 chr3L 16322828 16322847 chr3L 16322917 16322937 11 89 4.0 3.0 3.5 2.4 109 chr3L 16322828 intergenic not near genes chr3L 16322882 intergenic not near genes chr3L 16322937 intergenic not near genes chr3L_11_16320001 chr3L_16320001 RAL-783 882 chr3L 16437070 16437101 chr3L 16437148 16437187 5 84 2.0 0.5 1.2 2.3 117 chr3L 16437070 intron,intron CG33158 +,dsx-c73A - chr3L 16437128 intron,intron CG33158 +,dsx-c73A - chr3L 16437187 intron,intron CG33158 +,dsx-c73A - chr3L_5_16435001 chr3L_16435001 RAL-783 883 chr3L 16443851 16443878 chr3L 16446189 16446203 Doc 6 2337 1.0 2.5 1.8 2.1 2352 chr3L 16443851 intron,intron CG33158 +,dsx-c73A - chr3L 16445027 intron,intron CG33158 +,dsx-c73A - chr3L 16446203 intron,intron CG33158 +,dsx-c73A - chr3L_6_16445001 chr3L_16445001 RAL-783 884 chr3L 16493978 16494011 chr3L 16494492 16494528 jockey 12 515 6.0 1.5 3.8 2.5 550 chr3L 16493978 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494253 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494528 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_12_16490001 chr3L_16490001 RAL-783 885 chr3L 16498531 16498550 chr3L 16498639 16498658 8 107 3.0 0.0 1.5 3.2 127 chr3L 16498531 intron,exon CG43373 -,st + chr3L 16498594 intron,intron CG43373 -,st + chr3L 16498658 intron,intron CG43373 -,st + chr3L_8_16495001 chr3L_16495001 RAL-783 886 chr3L 16503627 16503656 chr3L 16503702 16503733 4 74 2.0 2.0 2.0 1.3 106 chr3L 16503627 intron CG43373 - chr3L 16503680 intron CG43373 - chr3L 16503733 intron CG43373 - chr3L_4_16500001 chr3L_16500001 RAL-783 887 chr3L 16533569 16533584 chr3L 16533680 16533695 4 111 1.0 2.0 1.5 1.6 126 chr3L 16533569 intron CG43373 - chr3L 16533632 intron CG43373 - chr3L 16533695 intron CG43373 - chr3L_4_16530001 chr3L_16530001 RAL-783 888 chr3L 16540068 16540086 chr3L 16540149 16540164 6 85 2.0 3.0 2.5 1.7 96 chr3L 16540068 intron CG43373 - chr3L 16540116 intron CG43373 - chr3L 16540164 intron CG43373 - chr3L_6_16540001 chr3L_16540001 RAL-783 889 chr3L 16563239 16563249 chr3L 16563320 16563330 4 81 1.0 0.0 0.5 2.7 91 chr3L 16563239 intergenic Mipp1 - chr3L 16563284 intergenic Mipp1 - chr3L 16563330 intergenic Mipp1 - chr3L_4_16560001 chr3L_16560001 RAL-783 890 chr3L 16581769 16581797 chr3L 16582131 16582161 16 361 1.0 1.0 1.0 8.0 392 chr3L 16581769 5` UTR CR43727 + chr3L 16581965 5` UTR CR43727 + chr3L 16582161 5` UTR CR43727 + chr3L_16_16580001 chr3L_16580001 RAL-783 891 chr3L 16708524 16708548 chr3L 16708638 16708662 5 114 1.5 0.5 1.0 2.5 138 chr3L 16708524 intron,intron Lasp -,CG43954 - chr3L 16708593 intron,intron Lasp -,CG43954 - chr3L 16708662 intron,intron Lasp -,CG43954 - chr3L_5_16705001 chr3L_16705001 RAL-783 892 chr3L 16745591 16745600 chr3L 16745649 16745677 4 72 5.5 3.0 4.2 0.8 86 chr3L 16745591 intergenic not near genes chr3L 16745634 intergenic not near genes chr3L 16745677 intergenic not near genes chr3L_4_16745001 chr3L_16745001 RAL-783 893 chr3L 16818751 16818780 chr3L 16818827 16818856 11 76 2.0 3.0 2.5 3.1 105 chr3L 16818751 intron,intron nudC +,CG13024 - chr3L 16818804 intron,intron nudC +,CG13024 - chr3L 16818856 intron,intron nudC +,CG13024 - chr3L_11_16815001 chr3L_16815001 RAL-783 894 chr3L 16845030 16845043 chr3L 16845139 16845156 7 111 3.5 2.0 2.8 1.8 126 chr3L 16845030 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845093 intergenic CG9669 -,CG9715 + chr3L 16845156 intergenic CG9669 -,CG9715 + chr3L_7_16845001 chr3L_16845001 RAL-783 895 chr3L 16926099 16926130 chr3L 16926175 16926207 9 77 1.0 1.5 1.2 4.1 108 chr3L 16926099 intron CG13023 - chr3L 16926153 intron CG13023 - chr3L 16926207 intron CG13023 - chr3L_9_16925001 chr3L_16925001 RAL-783 896 chr3L 16945739 16945756 chr3L 16954885 16954890 roo 9 9147 6.0 0.5 3.2 2.1 9151 chr3L 16945739 exon Obp73a + chr3L 16950314 intergenic not near genes chr3L 16954890 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-783 897 chr3L 17026812 17026822 chr3L 17026869 17026902 4 74 3.5 2.5 3.0 1.0 90 chr3L 17026812 3` UTR Fit2 + chr3L 17026857 3` UTR Fit2 + chr3L 17026902 3` UTR Fit2 + chr3L_4_17025001 chr3L_17025001 RAL-783 898 chr3L 17085013 17085032 chr3L 17094162 17094181 roo 7 9149 1.5 4.5 3.0 1.8 9168 chr3L 17085013 intron Rbp6 - chr3L 17089597 intron Rbp6 - chr3L 17094181 intron Rbp6 - chr3L_7_17085001 chr3L_17085001 RAL-783 899 chr3L 17110325 17110342 chr3L 17110398 17110417 9 76 2.0 2.5 2.2 2.8 92 chr3L 17110325 intron Rbp6 - chr3L 17110371 intron Rbp6 - chr3L 17110417 intron Rbp6 - chr3L_9_17110001 chr3L_17110001 RAL-783 900 chr3L 17120657 17120937 chr3L 17120733 17121013 10 76 4.0 2.5 3.2 2.4 356 chr3L 17120657 intron Rbp6 - chr3L 17120835 intron Rbp6 - chr3L 17121013 intron Rbp6 - chr3L_10_17120001 chr3L_17120001 RAL-783 901 chr3L 17265309 17265332 chr3L 17265386 17265411 9 79 4.5 1.0 2.8 2.4 102 chr3L 17265309 intergenic CG13723 + chr3L 17265360 intergenic CG13723 + chr3L 17265411 intergenic CG13723 + chr3L_9_17265001 chr3L_17265001 RAL-783 902 chr3L 17331064 17331085 chr3L 17331154 17331175 5 90 2.5 3.0 2.8 1.3 111 chr3L 17331064 intergenic not near genes chr3L 17331120 intergenic not near genes chr3L 17331175 intergenic not near genes chr3L_5_17330001 chr3L_17330001 RAL-783 903 chr3L 17367434 17367460 chr3L 17367528 17367554 7 94 0.5 2.5 1.5 2.8 120 chr3L 17367434 intergenic CR45688 +,Cad74A - chr3L 17367494 intergenic CR45688 +,Cad74A - chr3L 17367554 intergenic CR45688 +,Cad74A - chr3L_7_17365001 chr3L_17365001 RAL-783 904 chr3L 17430471 17430494 chr3L 17430552 17430561 6 77 1.5 4.0 2.8 1.6 90 chr3L 17430471 intron,3` UTR CG32174 -,frc - chr3L 17430516 intron,3` UTR CG32174 -,frc - chr3L 17430561 intron,3` UTR CG32174 -,frc - chr3L_6_17430001 chr3L_17430001 RAL-783 905 chr3L 17496751 17496766 chr3L 17496839 17496853 6 87 3.0 4.0 3.5 1.3 102 chr3L 17496751 intron Oatp74D + chr3L 17496802 intron Oatp74D + chr3L 17496853 intron Oatp74D + chr3L_6_17495001 chr3L_17495001 RAL-783 906 chr3L 17516980 17517011 chr3L 17524538 17524566 412 11 7557 3.0 1.5 2.2 3.4 7586 chr3L 17516980 intron CG7564 + chr3L 17520773 intron CG7564 + chr3L 17524566 3` UTR CG7564 + chr3L_11_17520001 chr3L_17520001 RAL-783 907 chr3L 17569640 17569661 chr3L 17569740 17569742 5 96 2.5 3.0 2.8 1.3 102 chr3L 17569640 intron Eip74EF - chr3L 17569691 intron Eip74EF - chr3L 17569742 intron Eip74EF - chr3L_5_17565001 chr3L_17565001 RAL-783 908 chr3L 17702352 17702380 chr3L 17702436 17702464 7 82 2.0 2.0 2.0 2.3 112 chr3L 17702352 intron Ccn + chr3L 17702408 intron Ccn + chr3L 17702464 intron Ccn + chr3L_7_17700001 chr3L_17700001 RAL-783 909 chr3L 17766101 17766129 chr3L 17769706 17769734 9 3606 14.0 25.0 19.5 0.4 3633 chr3L 17766101 intergenic not near genes chr3L 17767918 intergenic not near genes chr3L 17769734 intergenic not near genes chr3L_9_17765001 chr3L_17765001 RAL-783 910 chr3L 17789845 17789876 chr3L 17789921 17789952 5 76 0.5 2.0 1.2 2.3 107 chr3L 17789845 intergenic not near genes chr3L 17789898 intergenic not near genes chr3L 17789952 intergenic not near genes chr3L_5_17785001 chr3L_17785001 RAL-783 911 chr3L 17790194 17790230 chr3L 17790306 17790347 5 113 3.5 4.5 4.0 1.0 153 chr3L 17790194 intergenic not near genes chr3L 17790270 intergenic not near genes chr3L 17790347 intergenic not near genes chr3L_5_17790001 chr3L_17790001 RAL-783 912 chr3L 17978962 17978982 chr3L 17979527 17979547 14 564 3.0 3.5 3.2 3.3 585 chr3L 17978962 intron Eip75B - chr3L 17979254 intron Eip75B - chr3L 17979547 intron Eip75B - chr3L_14_17975001 chr3L_17975001 RAL-783 913 chr3L 18013974 18013986 chr3L 18014062 18014075 5 89 1.5 0.0 0.8 2.8 101 chr3L 18013974 intron Eip75B - chr3L 18014024 intron Eip75B - chr3L 18014075 intron Eip75B - chr3L_5_18010001 chr3L_18010001 RAL-783 914 chr3L 18092785 18092804 chr3L 18092897 18092918 7 114 2.0 0.0 1.0 3.5 133 chr3L 18092785 intron CG13698 - chr3L 18092852 intron CG13698 - chr3L 18092918 intron CG13698 - chr3L_7_18090001 chr3L_18090001 RAL-783 915 chr3L 18197690 18197870 chr3L 18197773 18197966 10 85 0.0 0.0 0.0 10.0 276 chr3L 18197690 intergenic not near genes chr3L 18197828 intergenic not near genes chr3L 18197966 intergenic not near genes chr3L_10_18195001 chr3L_18195001 RAL-783 916 chr3L 18224210 18224238 chr3L 18224297 18224325 5 87 0.5 1.5 1.0 2.5 115 chr3L 18224210 intergenic not near genes chr3L 18224268 intergenic not near genes chr3L 18224325 intergenic not near genes chr3L_5_18220001 chr3L_18220001 RAL-783 917 chr3L 18267842 18267860 chr3L 18267919 18267937 6 77 1.5 0.0 0.8 3.3 95 chr3L 18267842 intergenic not near genes chr3L 18267890 intergenic not near genes chr3L 18267937 intergenic not near genes chr3L_6_18265001 chr3L_18265001 RAL-783 918 chr3L 18420079 18420089 chr3L 18420163 18420173 5 84 1.5 2.5 2.0 1.7 94 chr3L 18420079 intergenic not near genes chr3L 18420126 intergenic not near genes chr3L 18420173 intergenic not near genes chr3L_5_18420001 chr3L_18420001 RAL-783 919 chr3L 18436074 18436092 chr3L 18436172 18436190 4 98 1.0 3.0 2.0 1.3 116 chr3L 18436074 intergenic not near genes chr3L 18436132 intergenic not near genes chr3L 18436190 intergenic not near genes chr3L_4_18435001 chr3L_18435001 RAL-783 920 chr3L 18506139 18506164 chr3L 18509602 18509626 F-element 7 3463 0.5 1.5 1.0 3.5 3487 chr3L 18506139 intergenic not near genes chr3L 18507882 intergenic not near genes chr3L 18509626 intergenic not near genes chr3L_7_18505001 chr3L_18505001 RAL-783 921 chr3L 18638583 18638607 chr3L 18638676 18638701 6 93 0.0 1.5 0.8 3.3 118 chr3L 18638583 intron MYPT-75D + chr3L 18638642 intron MYPT-75D + chr3L 18638701 intron MYPT-75D + chr3L_6_18635001 chr3L_18635001 RAL-783 922 chr3L 18656182 18656214 chr3L 18656267 18656299 14 83 3.5 2.0 2.8 3.7 117 chr3L 18656182 intron MYPT-75D + chr3L 18656240 intron MYPT-75D + chr3L 18656299 intron MYPT-75D + chr3L_14_18655001 chr3L_18655001 RAL-783 923 chr3L 18701133 18701160 chr3L 18701221 18701248 7 88 4.0 3.0 3.5 1.6 115 chr3L 18701133 intergenic not near genes chr3L 18701190 intergenic not near genes chr3L 18701248 intergenic not near genes chr3L_7_18700001 chr3L_18700001 RAL-783 924 chr3L 18725284 18725291 chr3L 18725590 18725597 4 306 1.0 2.5 1.8 1.4 313 chr3L 18725284 intergenic not near genes chr3L 18725440 intergenic not near genes chr3L 18725597 intergenic not near genes chr3L_4_18725001 chr3L_18725001 RAL-783 925 chr3L 18725292 18725297 chr3L 18725578 18725583 4 296 1.0 2.0 1.5 1.6 291 chr3L 18725292 intergenic not near genes chr3L 18725438 intergenic not near genes chr3L 18725583 intergenic not near genes chr3L_4_18725001 chr3L_18725001 RAL-783 926 chr3L 18772411 18772441 chr3L 18781092 18781121 roo 10 8681 1.5 3.5 2.5 2.9 8710 chr3L 18772411 intron ftz-f1 - chr3L 18776766 intron ftz-f1 - chr3L 18781121 intron ftz-f1 - chr3L_10_18775001 chr3L_18775001 RAL-783 927 chr3L 18839740 18839764 chr3L 18839823 18839846 4 83 2.0 0.5 1.2 1.8 106 chr3L 18839740 intron Indy - chr3L 18839793 intron Indy - chr3L 18839846 intron Indy - chr3L_4_18835001 chr3L_18835001 RAL-783 928 chr3L 18887300 18887330 chr3L 18887406 18887436 5 106 0.5 2.5 1.5 2.0 136 chr3L 18887300 intron CG3961 - chr3L 18887368 intron CG3961 - chr3L 18887436 intron CG3961 - chr3L_5_18885001 chr3L_18885001 RAL-783 929 chr3L 18896761 18896791 chr3L 18896895 18896925 9 134 2.5 1.5 2.0 3.0 164 chr3L 18896761 intron CG3902 - chr3L 18896843 intron CG3902 - chr3L 18896925 intron CG3902 - chr3L_9_18895001 chr3L_18895001 RAL-783 930 chr3L 18957296 18957326 chr3L 18957375 18957394 11 79 2.5 7.5 5.0 1.8 98 chr3L 18957296 intergenic not near genes chr3L 18957345 intergenic not near genes chr3L 18957394 intergenic not near genes chr3L_11_18955001 chr3L_18955001 RAL-783 931 chr3L 19008845 19008869 chr3L 19009183 19009207 jockey 7 337 5.5 4.0 4.8 1.2 362 chr3L 19008845 intron nkd - chr3L 19009026 intron nkd - chr3L 19009207 intron nkd - chr3L_7_19005001 chr3L_19005001 RAL-783 932 chr3L 19115636 19115652 chr3L 19115816 19115832 BS 5 180 11.5 4.0 7.8 0.6 196 chr3L 19115636 intron CG14082 - chr3L 19115734 intron CG14082 - chr3L 19115832 intron CG14082 - chr3L_5_19115001 chr3L_19115001 RAL-783 933 chr3L 19115653 19115672 chr3L 19115815 19115851 BS 6 177 8.0 4.0 6.0 0.9 198 chr3L 19115653 intron CG14082 - chr3L 19115752 intron CG14082 - chr3L 19115851 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-783 934 chr3L 19117049 19117075 chr3L 19124491 19124522 mdg1 10 7446 3.5 5.0 4.2 1.9 7473 chr3L 19117049 intron CG14082 - chr3L 19120786 intron CG14082 - chr3L 19124522 intron CG14082 - chr3L_10_19120001 chr3L_19120001 RAL-783 935 chr3L 19182397 19182419 chr3L 19182478 19182497 6 80 1.0 2.0 1.5 2.4 100 chr3L 19182397 intron fz2 - chr3L 19182447 intron fz2 - chr3L 19182497 intron fz2 - chr3L_6_19180001 chr3L_19180001 RAL-783 936 chr3L 19208058 19208091 chr3L 19209432 19209465 Doc 12 1373 2.0 3.5 2.8 3.2 1407 chr3L 19208058 intron fz2 - chr3L 19208762 intron fz2 - chr3L 19209465 intron fz2 - chr3L_12_19205001 chr3L_19205001 RAL-783 937 chr3L 19223350 19223371 chr3L 19223441 19223474 5 100 2.0 0.0 1.0 2.5 124 chr3L 19223350 intron fz2 - chr3L 19223412 intron fz2 - chr3L 19223474 intron fz2 - chr3L_5_19220001 chr3L_19220001 RAL-783 938 chr3L 19244115 19244138 chr3L 19244192 19244215 7 77 3.0 5.0 4.0 1.4 100 chr3L 19244115 intergenic not near genes chr3L 19244165 intergenic not near genes chr3L 19244215 intergenic not near genes chr3L_7_19240001 chr3L_19240001 RAL-783 939 chr3L 19342583 19342591 chr3L 19342793 19342801 4 210 2.0 1.0 1.5 1.6 218 chr3L 19342583 3` UTR CG32206 - chr3L 19342692 3` UTR CG32206 - chr3L 19342801 3` UTR CG32206 - chr3L_4_19340001 chr3L_19340001 RAL-783 940 chr3L 19426761 19426780 chr3L 19426831 19426858 5 76 1.5 4.0 2.8 1.3 97 chr3L 19426761 intergenic not near genes chr3L 19426810 intergenic not near genes chr3L 19426858 intergenic not near genes chr3L_5_19425001 chr3L_19425001 RAL-783 941 chr3L 19430398 19430415 chr3L 19430476 19430493 4 78 1.0 2.5 1.8 1.4 95 chr3L 19430398 intergenic not near genes chr3L 19430446 intergenic not near genes chr3L 19430493 intergenic not near genes chr3L_4_19430001 chr3L_19430001 RAL-783 942 chr3L 19845741 19845761 chr3L 19845827 19845848 9 87 1.0 2.5 1.8 3.2 107 chr3L 19845741 intron Papss + chr3L 19845794 intron Papss + chr3L 19845848 intron Papss + chr3L_9_19845001 chr3L_19845001 RAL-783 943 chr3L 19861821 19861851 chr3L 19863609 19863639 S-element 6 1788 3.0 1.5 2.2 1.9 1818 chr3L 19861821 5` UTR CR45433 + chr3L 19862730 intergenic not near genes chr3L 19863639 intergenic not near genes chr3L_6_19860001 chr3L_19860001 RAL-783 944 chr3L 20033808 20033829 chr3L 20038788 20038809 6 4980 6.5 20.5 13.5 0.4 5001 chr3L 20033808 intergenic not near genes chr3L 20036308 intergenic not near genes chr3L 20038809 intergenic not near genes chr3L_6_20035001 chr3L_20035001 RAL-783 945 chr3L 20055112 20055121 chr3L 20055464 20055477 6 356 3.0 3.0 3.0 1.5 365 chr3L 20055112 intergenic not near genes chr3L 20055294 intergenic not near genes chr3L 20055477 intergenic not near genes chr3L_6_20055001 chr3L_20055001 RAL-783 946 chr3L 20055122 20055126 chr3L 20055463 20055482 4 350 1.5 3.0 2.2 1.2 360 chr3L 20055122 intergenic not near genes chr3L 20055302 intergenic not near genes chr3L 20055482 intergenic not near genes chr3L_4_20055001 chr3L_20055001 RAL-783 947 chr3L 20113474 20113504 chr3L 20113569 20113599 7 95 3.0 1.5 2.2 2.2 125 chr3L 20113474 intergenic not near genes chr3L 20113536 intergenic not near genes chr3L 20113599 intergenic not near genes chr3L_7_20110001 chr3L_20110001 RAL-783 948 chr3L 20113657 20113676 chr3L 20122914 20122933 roo 5 9257 3.0 0.0 1.5 2.0 9276 chr3L 20113657 intergenic not near genes chr3L 20118295 intergenic not near genes chr3L 20122933 intergenic not near genes chr3L_5_20115001 chr3L_20115001 RAL-783 949 chr3L 20143084 20143092 chr3L 20143164 20143172 5 79 3.5 1.5 2.5 1.4 88 chr3L 20143084 intergenic not near genes chr3L 20143128 intergenic not near genes chr3L 20143172 intergenic not near genes chr3L_5_20140001 chr3L_20140001 RAL-783 950 chr3L 20148285 20148314 chr3L 20148375 20148404 7 90 2.0 3.0 2.5 2.0 119 chr3L 20148285 intergenic not near genes chr3L 20148344 intergenic not near genes chr3L 20148404 intergenic not near genes chr3L_7_20145001 chr3L_20145001 RAL-783 951 chr3L 20158898 20158928 chr3L 20159040 20159070 7 142 1.0 0.5 0.8 3.9 172 chr3L 20158898 intron CG42674 - chr3L 20158984 intron CG42674 - chr3L 20159070 intron CG42674 - chr3L_7_20155001 chr3L_20155001 RAL-783 952 chr3L 20257335 20257356 chr3L 20258455 20258476 pogo 7 1120 0.5 1.0 0.8 3.9 1141 chr3L 20257335 intron rdgC + chr3L 20257906 intron rdgC + chr3L 20258476 intron rdgC + chr3L_7_20255001 chr3L_20255001 RAL-783 953 chr3L 20283678 20283706 chr3L 20283762 20283788 6 83 1.5 1.5 1.5 2.4 110 chr3L 20283678 intron gogo - chr3L 20283733 intron gogo - chr3L 20283788 intron gogo - chr3L_6_20280001 chr3L_20280001 RAL-783 954 chr3L 20345606 20345639 chr3L 20345687 20345720 12 80 1.0 1.5 1.2 5.5 114 chr3L 20345606 intergenic Rbbp5 - chr3L 20345663 intergenic Rbbp5 - chr3L 20345720 intergenic Rbbp5 - chr3L_12_20345001 chr3L_20345001 RAL-783 955 chr3L 20405583 20405608 chr3L 20405666 20405669 14 80 4.0 4.0 4.0 2.8 86 chr3L 20405583 intergenic not near genes chr3L 20405626 intergenic not near genes chr3L 20405669 intergenic not near genes chr3L_14_20405001 chr3L_20405001 RAL-783 956 chr3L 20487662 20487674 chr3L 20488112 20488125 INE-1 7 450 6.0 3.0 4.5 1.3 463 chr3L 20487662 intron ZnT77C - chr3L 20487894 intron ZnT77C - chr3L 20488125 intron ZnT77C - chr3L_7_20485001 chr3L_20485001 RAL-783 957 chr3L 20645619 20645628 chr3L 20645681 20645715 5 79 1.5 2.0 1.8 1.8 96 chr3L 20645619 intergenic not near genes chr3L 20645667 intergenic not near genes chr3L 20645715 intergenic not near genes chr3L_5_20645001 chr3L_20645001 RAL-783 958 chr3L 20657036 20657069 chr3L 20657121 20657156 9 88 2.5 1.5 2.0 3.0 120 chr3L 20657036 intergenic not near genes chr3L 20657096 intergenic not near genes chr3L 20657156 intergenic not near genes chr3L_9_20655001 chr3L_20655001 RAL-783 959 chr3L 20849270 20849301 chr3L 20849349 20849380 8 79 1.0 2.0 1.5 3.2 110 chr3L 20849270 intron CG32432 - chr3L 20849325 intron CG32432 - chr3L 20849380 intron CG32432 - chr3L_8_20845001 chr3L_20845001 RAL-783 960 chr3L 21014930 21014947 chr3L 21023395 21023404 Tirant 6 8469 3.5 3.5 3.5 1.3 8474 chr3L 21014930 intron skd - chr3L 21019167 intron skd - chr3L 21023404 intron skd - chr3L_6_21015001 chr3L_21015001 RAL-783 961 chr3L 21062457 21062483 chr3L 21062552 21062559 6 92 2.0 2.0 2.0 2.0 102 chr3L 21062457 intron siz + chr3L 21062508 intron siz + chr3L 21062559 intron siz + chr3L_6_21060001 chr3L_21060001 RAL-783 962 chr3L 21082208 21082241 chr3L 21082286 21082319 7 78 1.5 1.5 1.5 2.8 111 chr3L 21082208 intron ko - chr3L 21082264 intron ko - chr3L 21082319 intron ko - chr3L_7_21080001 chr3L_21080001 RAL-783 963 chr3L 21150929 21150966 chr3L 21151065 21151096 4 133 0.5 1.0 0.8 2.2 167 chr3L 21150929 intron Ac78C - chr3L 21151012 intron Ac78C - chr3L 21151096 intron Ac78C - chr3L_4_21150001 chr3L_21150001 RAL-783 964 chr3L 21151864 21151894 chr3L 21156948 21156978 flea 8 5084 3.5 0.0 1.8 2.9 5114 chr3L 21151864 intron Ac78C - chr3L 21154421 intron Ac78C - chr3L 21156978 intron Ac78C - chr3L_8_21150001 chr3L_21150001 RAL-783 965 chr3L 21160968 21160995 chr3L 21161064 21161084 11 95 3.0 3.0 3.0 2.8 116 chr3L 21160968 5` UTR Ac78C - chr3L 21161026 intron Ac78C - chr3L 21161084 intron Ac78C - chr3L_11_21160001 chr3L_21160001 RAL-783 966 chr3L 21170056 21170087 chr3L 21170281 21170313 9 226 2.5 3.0 2.8 2.4 257 chr3L 21170056 intron Ac78C - chr3L 21170184 intron Ac78C - chr3L 21170313 intron Ac78C - chr3L_9_21170001 chr3L_21170001 RAL-783 967 chr3L 21274203 21274231 chr3L 21274374 21274402 5 171 2.5 3.0 2.8 1.3 199 chr3L 21274203 intron AcCoAS - chr3L 21274302 intron AcCoAS - chr3L 21274402 intron AcCoAS - chr3L_5_21270001 chr3L_21270001 RAL-783 968 chr3L 21306147 21306170 chr3L 21315306 21315328 roo 5 9159 2.0 1.0 1.5 2.0 9181 chr3L 21306147 3` UTR,3` UTR CG7632 +,Pc - chr3L 21310738 intron Pc - chr3L 21315328 3` UTR Pc - chr3L_5_21310001 chr3L_21310001 RAL-783 969 chr3L 21415137 21415163 chr3L 21415220 21415246 7 83 3.0 3.0 3.0 1.8 109 chr3L 21415137 intron rgn + chr3L 21415192 intron rgn + chr3L 21415246 intron rgn + chr3L_7_21415001 chr3L_21415001 RAL-783 970 chr3L 21498833 21498863 chr3L 21500469 21500499 1360 9 1631 4.0 2.5 3.2 2.1 1666 chr3L 21498833 intron Glg1 - chr3L 21499666 intron Glg1 - chr3L 21500499 intron Glg1 - chr3L_9_21495001 chr3L_21495001 RAL-783 971 chr3L 21749330 21749345 chr3L 21754480 21754486 Doc 6 5154 4.5 5.5 5.0 1.0 5156 chr3L 21749330 intron Syn1 - chr3L 21751908 intron Syn1 - chr3L 21754486 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-783 972 chr3L 21776671 21776702 chr3L 21776758 21776789 6 87 1.0 1.0 1.0 3.0 118 chr3L 21776671 intron,intron CG42689 +,CG42552 + chr3L 21776730 intron,intron CG42689 +,CG42552 + chr3L 21776789 intron,intron CG42689 +,CG42552 + chr3L_6_21775001 chr3L_21775001 RAL-783 973 chr3L 21849502 21849524 chr3L 21849584 21849606 9 81 2.5 0.0 1.2 4.1 104 chr3L 21849502 intron mub + chr3L 21849554 intron mub + chr3L 21849606 intron mub + chr3L_9_21845001 chr3L_21845001 RAL-783 974 chr3L 21901024 21901042 chr3L 21901117 21901134 5 92 5.0 3.0 4.0 1.0 110 chr3L 21901024 intron mub + chr3L 21901079 intron mub + chr3L 21901134 intron mub + chr3L_5_21900001 chr3L_21900001 RAL-783 975 chr3L 22016372 22016389 chr3L 22016487 22016505 4 116 4.5 2.0 3.2 1.0 133 chr3L 22016372 intergenic not near genes chr3L 22016438 intergenic not near genes chr3L 22016505 intergenic not near genes chr3L_4_22015001 chr3L_22015001 RAL-783 976 chr3L 22033694 22033718 chr3L 22033771 22033796 9 78 4.5 1.5 3.0 2.2 102 chr3L 22033694 intergenic not near genes chr3L 22033745 intergenic not near genes chr3L 22033796 intergenic not near genes chr3L_9_22030001 chr3L_22030001 RAL-783 977 chr3L 22046188 22046210 chr3L 22046291 22046311 8 102 1.5 3.0 2.2 2.5 123 chr3L 22046188 intron Oct-TyrR + chr3L 22046250 intron Oct-TyrR + chr3L 22046311 intron Oct-TyrR + chr3L_8_22045001 chr3L_22045001 RAL-783 978 chr3L 22124945 22124973 chr3L 22125101 22125129 5 156 3.0 3.0 3.0 1.2 184 chr3L 22124945 intergenic not near genes chr3L 22125037 intergenic not near genes chr3L 22125129 intergenic not near genes chr3L_5_22125001 chr3L_22125001 RAL-783 979 chr3L 22137525 22137556 chr3L 22137602 22137633 10 75 1.0 2.5 1.8 3.6 108 chr3L 22137525 intron olf413 + chr3L 22137579 intron olf413 + chr3L 22137633 intron olf413 + chr3L_10_22135001 chr3L_22135001 RAL-783 980 chr3L 22241293 22241322 chr3L 22241374 22241387 9 75 2.5 2.5 2.5 2.6 94 chr3L 22241293 intron olf413 + chr3L 22241340 intron olf413 + chr3L 22241387 intron olf413 + chr3L_9_22240001 chr3L_22240001 RAL-783 981 chr3L 22251001 22251028 chr3L 22251096 22251120 5 94 5.5 5.0 5.2 0.8 119 chr3L 22251001 intergenic not near genes chr3L 22251060 intergenic not near genes chr3L 22251120 intergenic not near genes chr3L_5_22250001 chr3L_22250001 RAL-783 982 chr3L 22333039 22333073 chr3L 22333120 22333153 4 80 1.5 2.5 2.0 1.3 114 chr3L 22333039 intron Ten-m - chr3L 22333096 intron Ten-m - chr3L 22333153 intron Ten-m - chr3L_4_22330001 chr3L_22330001 RAL-783 983 chr3L 22447195 22447229 chr3L 22447286 22447320 9 91 3.0 2.0 2.5 2.6 125 chr3L 22447195 intergenic not near genes chr3L 22447258 intergenic not near genes chr3L 22447320 intergenic not near genes chr3L_9_22445001 chr3L_22445001 RAL-783 984 chr3L 22523538 22523563 chr3L 22523712 22523737 6 172 4.0 2.0 3.0 1.5 199 chr3L 22523538 intergenic not near genes chr3L 22523638 intergenic not near genes chr3L 22523737 intergenic not near genes chr3L_6_22520001 chr3L_22520001 RAL-783 985 chr3L 22555769 22555800 chr3L 22563239 22563240 blood 8 7464 0.5 0.5 0.5 5.3 7471 chr3L 22555769 intergenic not near genes chr3L 22559504 intergenic not near genes chr3L 22563240 intergenic not near genes chr3L_8_22555001 chr3L_22555001 RAL-783 986 chr3L 22577626 22577649 chr3L 22582413 22582437 Doc 7 4786 0.5 4.0 2.2 2.2 4811 chr3L 22577626 intergenic not near genes chr3L 22580032 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_7_22580001 chr3L_22580001 RAL-783 987 chr3L 22617195 22617212 chr3L 22624647 22624664 blood 5 7452 4.5 2.0 3.2 1.2 7469 chr3L 22617195 intron CG14459 - chr3L 22620930 intron CG14459 - chr3L 22624664 intron CG14459 - chr3L_5_22620001 chr3L_22620001 RAL-783 988 chr3L 22682221 22682244 chr3L 22682321 22682344 6 100 2.5 2.5 2.5 1.7 123 chr3L 22682221 intergenic not near genes chr3L 22682282 intergenic not near genes chr3L 22682344 intergenic not near genes chr3L_6_22680001 chr3L_22680001 RAL-783 989 chr3L 22797333 22797365 chr3L 22797426 22797436 8 90 3.5 2.0 2.8 2.1 103 chr3L 22797333 3` UTR jim - chr3L 22797384 3` UTR jim - chr3L 22797436 3` UTR jim - chr3L_8_22795001 chr3L_22795001 RAL-783 990 chr3L 22853461 22853717 chr3L 22853548 22853803 18 86 3.5 3.0 3.2 4.3 342 chr3L 22853461 5` UTR,5` UTR CR43426 +,CG32462 - chr3L 22853632 5` UTR CR43426 + chr3L 22853803 5` UTR CR43426 + chr3L_18_22850001 chr3L_22850001 RAL-783 991 chr3L 22865993 22866017 chr3L 22867126 22867150 Doc 6 1133 1.0 2.0 1.5 2.4 1157 chr3L 22865993 intron CG33170 + chr3L 22866572 intron CG33170 + chr3L 22867150 intron CG33170 + chr3L_6_22865001 chr3L_22865001 RAL-783 992 chr3L 22980581 22980595 chr3L 22980666 22980680 5 85 2.5 1.0 1.8 1.8 99 chr3L 22980581 intergenic not near genes chr3L 22980630 intergenic not near genes chr3L 22980680 intergenic not near genes chr3L_5_22980001 chr3L_22980001 RAL-783 993 chr3L 22989868 22989888 chr3L 22996839 22996859 297 5 6973 3.0 3.0 3.0 1.2 6991 chr3L 22989868 intergenic not near genes chr3L 22993364 intergenic not near genes chr3L 22996859 intergenic not near genes chr3L_5_22990001 chr3L_22990001 RAL-783 994 chr3L 23004905 23004940 chr3L 23005228 23005265 8 319 1.0 2.0 1.5 3.2 360 chr3L 23004905 intron nrm + chr3L 23005085 intron nrm + chr3L 23005265 intron nrm + chr3L_8_23005001 chr3L_23005001 RAL-783 995 chr3L 23319664 23319681 chr3L 23319754 23319772 7 90 4.0 4.5 4.2 1.3 108 chr3L 23319664 intron alpha-Cat - chr3L 23319718 intron alpha-Cat - chr3L 23319772 intron alpha-Cat - chr3L_7_23315001 chr3L_23315001 RAL-783 996 chr3L 24168786 24168821 chr3L 24176114 24176138 ZAM 4 7325 1.5 2.5 2.0 1.3 7352 chr3L 24168786 intron Snap25 + chr3L 24172462 intron Snap25 + chr3L 24176138 intron Snap25 + chr3L_4_24170001 chr3L_24170001 RAL-783 997 chr3L 24241958 24241972 chr3L 24242045 24242046 4 84 4.0 1.0 2.5 1.1 88 chr3L 24241958 intron Snap25 + chr3L 24242002 intron Snap25 + chr3L 24242046 intron Snap25 + chr3L_4_24240001 chr3L_24240001 RAL-783 998 chr3L 24725873 24725881 chr3L 24725963 24725971 7 90 0.5 2.5 1.5 2.8 98 chr3L 24725873 exon scro + chr3L 24725922 exon scro + chr3L 24725971 exon scro + chr3L_7_24725001 chr3L_24725001 RAL-783 999 chr3L 25202527 25202535 chr3L 25202616 25202624 4 89 1.5 3.5 2.5 1.1 97 chr3L 25202527 intergenic not near genes chr3L 25202576 intergenic not near genes chr3L 25202624 intergenic not near genes chr3L_4_25200001 chr3L_25200001 RAL-783 1000 chr3L 25354052 25354066 chr3L 25354234 25354248 5 182 2.0 3.0 2.5 1.4 196 chr3L 25354052 intergenic not near genes chr3L 25354150 intergenic not near genes chr3L 25354248 intergenic not near genes chr3L_5_25350001 chr3L_25350001 RAL-783 1001 chr3L 25887722 25887738 chr3L 25887983 25887998 8 258 2.0 4.5 3.2 1.9 276 chr3L 25887722 intron CG40178 - chr3L 25887860 intron CG40178 - chr3L 25887998 intron CG40178 - chr3L_8_25885001 chr3L_25885001 RAL-783 1002 chr3L 27390690 27390699 chr3L 27390767 27390769 8 77 20.0 19.0 19.5 0.4 79 chr3L 27390690 intron Dbp80 + chr3L 27390730 intron Dbp80 + chr3L 27390769 intron Dbp80 + chr3L_8_27390001 chr3L_27390001 RAL-783 1003 chr3R 1521166 1521170 chr3R 1521250 1521258 4 86 5.5 4.0 4.8 0.7 92 chr3R 1521166 intergenic not near genes chr3R 1521212 intergenic not near genes chr3R 1521258 intergenic not near genes chr3R_4_1520001 chr3R_1520001 RAL-783 1004 chr3R 1521176 1521179 chr3R 1521249 1521267 4 80 6.0 4.0 5.0 0.7 91 chr3R 1521176 intergenic not near genes chr3R 1521222 intergenic not near genes chr3R 1521267 intergenic not near genes chr3R_4_1520001 chr3R_1520001 RAL-783 1005 chr3R 1521180 1521183 chr3R 1521244 1521267 6 80 5.5 4.0 4.8 1.0 87 chr3R 1521180 intergenic not near genes chr3R 1521224 intergenic not near genes chr3R 1521267 intergenic not near genes chr3R_6_1520001 chr3R_1520001 RAL-783 1006 chr3R 3178700 3178713 chr3R 3595184 3595194 8 416483 4.5 9.0 6.8 1.0 416494 chr3R 3178700 intron CG42617 - chr3R 3386947 intergenic not near genes chr3R 3595194 intergenic not near genes chr3R_8_3385001 chr3R_3385001 RAL-783 1007 chr3R 4063812 4063829 chr3R 4069092 4069109 4 5280 5.5 8.0 6.8 0.5 5297 chr3R 4063812 intergenic not near genes chr3R 4066460 intergenic not near genes chr3R 4069109 intergenic not near genes chr3R_4_4065001 chr3R_4065001 RAL-783 1008 chr3R 4206077 4206103 chr3R 4211651 4211678 mdg3 6 5574 1.5 2.0 1.8 2.1 5601 chr3R 4206077 intron CG14636 - chr3R 4208878 intron CG14636 - chr3R 4211678 intron CG14636 - chr3R_6_4205001 chr3R_4205001 RAL-783 1009 chr3R 4342599 4342599 chr3R 4347450 4347480 8 4854 11.0 20.5 15.8 0.5 4881 chr3R 4342599 intergenic not near genes chr3R 4345040 3` UTR hkb - chr3R 4347480 intergenic not near genes chr3R_8_4345001 chr3R_4345001 RAL-783 1010 chr3R 4408408 4408436 chr3R 4412712 4412740 Juan 6 4304 3.0 4.5 3.8 1.2 4332 chr3R 4408408 intron CG32944 - chr3R 4410574 intron CG32944 - chr3R 4412740 intron CG32944 - chr3R_6_4410001 chr3R_4410001 RAL-783 1011 chr3R 4454178 4454199 chr3R 4454256 4454277 6 77 6.0 2.5 4.2 1.2 99 chr3R 4454178 intron,5` UTR CG31522 -,CR43629 + chr3R 4454228 intron,5` UTR CG31522 -,CR43629 + chr3R 4454277 intron,5` UTR CG31522 -,CR43629 + chr3R_6_4450001 chr3R_4450001 RAL-783 1012 chr3R 4609555 4609581 chr3R 4610719 4610745 1360 5 1164 3.0 3.0 3.0 1.2 1190 chr3R 4609555 intergenic not near genes chr3R 4610150 intergenic not near genes chr3R 4610745 intergenic not near genes chr3R_5_4610001 chr3R_4610001 RAL-783 1013 chr3R 4769159 4769188 chr3R 4769237 4769266 8 76 4.5 1.5 3.0 2.0 107 chr3R 4769159 intron,intron atms +,CG44098 - chr3R 4769212 intron,intron atms +,CG44098 - chr3R 4769266 intron,intron atms +,CG44098 - chr3R_8_4765001 chr3R_4765001 RAL-783 1014 chr3R 4896290 4896319 chr3R 4896383 4896412 4 93 3.5 0.0 1.8 1.4 122 chr3R 4896290 intergenic CR45580 + chr3R 4896351 intergenic CR45580 + chr3R 4896412 intergenic CR45580 + chr3R_4_4895001 chr3R_4895001 RAL-783 1015 chr3R 4904878 4904887 chr3R 18214683 18214692 5 13309805 7.5 4.5 6.0 0.7 13309814 chr3R 4904878 intergenic not near genes chr3R 11559785 3` UTR CG10898 + chr3R 18214692 3` UTR CG7985 + chr3R_5_11555001 chr3R_11555001 RAL-783 1016 chr3R 4922344 4922357 chr3R 4922423 4922436 5 79 4.0 4.0 4.0 1.0 92 chr3R 4922344 intron Cdep + chr3R 4922390 intron Cdep + chr3R 4922436 intron Cdep + chr3R_5_4920001 chr3R_4920001 RAL-783 1017 chr3R 4966015 4966034 chr3R 4966105 4966126 5 90 1.0 1.5 1.2 2.3 111 chr3R 4966015 intron CG1124 + chr3R 4966070 intron CG1124 + chr3R 4966126 intron CG1124 + chr3R_5_4965001 chr3R_4965001 RAL-783 1018 chr3R 5035084 5035098 chr3R 5035294 5035306 6 210 1.5 1.0 1.2 2.7 222 chr3R 5035084 intergenic not near genes chr3R 5035195 intergenic not near genes chr3R 5035306 intergenic not near genes chr3R_6_5035001 chr3R_5035001 RAL-783 1019 chr3R 5038512 5038541 chr3R 5038920 5038949 7 406 1.0 1.0 1.0 3.5 437 chr3R 5038512 intergenic not near genes chr3R 5038730 intergenic not near genes chr3R 5038949 intergenic not near genes chr3R_7_5035001 chr3R_5035001 RAL-783 1020 chr3R 5067981 5068014 chr3R 5073498 5073531 mdg3 6 5516 0.5 1.5 1.0 3.0 5550 chr3R 5067981 intergenic not near genes chr3R 5070756 intergenic not near genes chr3R 5073531 intergenic not near genes chr3R_6_5070001 chr3R_5070001 RAL-783 1021 chr3R 5161958 5161968 chr3R 5162035 5162045 4 77 0.5 0.0 0.2 3.3 87 chr3R 5161958 intron dpr16 + chr3R 5162002 intron dpr16 + chr3R 5162045 intron dpr16 + chr3R_4_5160001 chr3R_5160001 RAL-783 1022 chr3R 5236225 5236244 chr3R 5236353 5236372 6 128 0.0 4.5 2.2 1.9 147 chr3R 5236225 3` UTR,3` UTR Mms19 +,rtp - chr3R 5236298 3` UTR rtp - chr3R 5236372 3` UTR rtp - chr3R_6_5235001 chr3R_5235001 RAL-783 1023 chr3R 5278089 5278120 chr3R 5278169 5278186 14 78 3.0 1.0 2.0 4.7 97 chr3R 5278089 intron mtd - chr3R 5278138 intron mtd - chr3R 5278186 intron mtd - chr3R_14_5275001 chr3R_5275001 RAL-783 1024 chr3R 5338405 5338421 chr3R 5343581 5343594 Rt1c 5 5176 2.0 4.5 3.2 1.2 5189 chr3R 5338405 intron mtd - chr3R 5341000 intron mtd - chr3R 5343594 intron mtd - chr3R_5_5340001 chr3R_5340001 RAL-783 1025 chr3R 5367176 5367178 chr3R 5367282 5367282 5 113 2.0 5.0 3.5 1.1 106 chr3R 5367176 intron Cerk - chr3R 5367229 intron Cerk - chr3R 5367282 intron Cerk - chr3R_5_5365001 chr3R_5365001 RAL-783 1026 chr3R 5385148 5385167 chr3R 5385328 5385347 5 180 5.5 4.0 4.8 0.9 199 chr3R 5385148 exon kkv - chr3R 5385248 intron kkv - chr3R 5385347 intron kkv - chr3R_5_5385001 chr3R_5385001 RAL-783 1027 chr3R 5385975 5386005 chr3R 5386147 5386175 9 171 0.5 5.0 2.8 2.4 200 chr3R 5385975 intron kkv - chr3R 5386075 intron kkv - chr3R 5386175 intron kkv - chr3R_9_5385001 chr3R_5385001 RAL-783 1028 chr3R 5436921 5436951 chr3R 5437006 5437030 8 84 1.5 2.5 2.0 2.7 109 chr3R 5436921 intron CG14669 + chr3R 5436976 intron CG14669 + chr3R 5437030 intron CG14669 + chr3R_8_5435001 chr3R_5435001 RAL-783 1029 chr3R 5445959 5445992 chr3R 5452419 5452452 Burdock 9 6457 1.0 2.5 1.8 3.2 6493 chr3R 5445959 intron CG14669 + chr3R 5449206 intron CG14669 + chr3R 5452452 intron CG14669 + chr3R_9_5445001 chr3R_5445001 RAL-783 1030 chr3R 5645013 5645040 chr3R 5645708 5645714 13 694 3.5 2.5 3.0 3.2 701 chr3R 5645013 intron MTA1-like - chr3R 5645364 intron MTA1-like - chr3R 5645714 intron MTA1-like - chr3R_13_5645001 chr3R_5645001 RAL-783 1031 chr3R 5746013 5746039 chr3R 5746254 5746280 pogo 5 241 1.5 1.5 1.5 2.0 267 chr3R 5746013 3` UTR Madm + chr3R 5746146 3` UTR Madm + chr3R 5746280 3` UTR Madm + chr3R_5_5745001 chr3R_5745001 RAL-783 1032 chr3R 5747014 5747040 chr3R 5753205 5753231 diver 5 6191 1.0 1.5 1.2 2.3 6217 chr3R 5747014 intergenic Madm + chr3R 5750122 intergenic not near genes chr3R 5753231 intergenic CG2091 - chr3R_5_5750001 chr3R_5750001 RAL-783 1033 chr3R 5822377 5822404 chr3R 5823544 5823571 1360 6 1167 4.5 4.0 4.2 1.2 1194 chr3R 5822377 3` UTR CG2023 - chr3R 5822974 3` UTR CG2023 - chr3R 5823571 3` UTR CG2023 - chr3R_6_5820001 chr3R_5820001 RAL-783 1034 chr3R 5861585 5861592 chr3R 5861664 5861670 4 79 1.5 1.0 1.2 1.8 85 chr3R 5861585 intron CG2017 - chr3R 5861628 intron CG2017 - chr3R 5861670 intron CG2017 - chr3R_4_5860001 chr3R_5860001 RAL-783 1035 chr3R 5931855 5931877 chr3R 5931931 5931952 4 76 4.5 4.5 4.5 0.7 97 chr3R 5931855 intron CG34113 - chr3R 5931904 intron CG34113 - chr3R 5931952 intron CG34113 - chr3R_4_5930001 chr3R_5930001 RAL-783 1036 chr3R 6015971 6015995 chr3R 6024452 6024476 Tirant 5 8481 1.5 2.0 1.8 1.8 8505 chr3R 6015971 intergenic not near genes chr3R 6020224 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_5_6020001 chr3R_6020001 RAL-783 1037 chr3R 6043639 6043666 chr3R 6043861 6043886 6 221 4.0 2.5 3.2 1.4 247 chr3R 6043639 intergenic not near genes chr3R 6043762 intergenic not near genes chr3R 6043886 intergenic not near genes chr3R_6_6040001 chr3R_6040001 RAL-783 1038 chr3R 6048449 6048477 chr3R 6048532 6048559 6 83 3.5 3.5 3.5 1.3 110 chr3R 6048449 intergenic not near genes chr3R 6048504 intergenic not near genes chr3R 6048559 intergenic not near genes chr3R_6_6045001 chr3R_6045001 RAL-783 1039 chr3R 6158513 6158539 chr3R 6167095 6167119 Tirant 9 8580 3.0 3.5 3.2 2.1 8606 chr3R 6158513 intergenic not near genes chr3R 6162816 intergenic not near genes chr3R 6167119 intergenic CG1077 + chr3R_9_6160001 chr3R_6160001 RAL-783 1040 chr3R 6175190 6175207 chr3R 6182462 6182464 HMS-Beagle2 6 7269 2.5 4.5 3.5 1.3 7274 chr3R 6175190 intergenic Osi1 + chr3R 6178827 intron CR45194 + chr3R 6182464 intergenic CR45194 + chr3R_6_6175001 chr3R_6175001 RAL-783 1041 chr3R 6187262 6187284 chr3R 6187339 6187368 7 81 1.5 0.5 1.0 3.5 106 chr3R 6187262 intergenic NPFR + chr3R 6187315 5` UTR NPFR + chr3R 6187368 5` UTR NPFR + chr3R_7_6185001 chr3R_6185001 RAL-783 1042 chr3R 6206281 6206318 chr3R 6206498 6206535 BS 6 216 4.5 4.0 4.2 1.2 254 chr3R 6206281 exon Osi24 + chr3R 6206408 intron Osi24 + chr3R 6206535 intron Osi24 + chr3R_6_6205001 chr3R_6205001 RAL-783 1043 chr3R 6226620 6226647 chr3R 6226707 6226735 8 87 2.0 1.5 1.8 2.9 115 chr3R 6226620 intergenic not near genes chr3R 6226678 intergenic not near genes chr3R 6226735 intergenic not near genes chr3R_8_6225001 chr3R_6225001 RAL-783 1044 chr3R 6282832 6282836 chr3R 6282945 6282965 4 124 3.0 1.5 2.2 1.2 133 chr3R 6282832 intergenic Osi12 + chr3R 6282898 intergenic Osi12 + chr3R 6282965 intergenic Osi12 + chr3R_4_6280001 chr3R_6280001 RAL-783 1045 chr3R 6320089 6320110 chr3R 6320403 6320424 8 314 17.0 12.5 14.8 0.5 335 chr3R 6320089 intron Osi17 + chr3R 6320256 intron Osi17 + chr3R 6320424 intron Osi17 + chr3R_8_6320001 chr3R_6320001 RAL-783 1046 chr3R 6538218 6538232 chr3R 6538314 6538330 4 97 2.5 2.5 2.5 1.1 112 chr3R 6538218 intron dpr11 - chr3R 6538274 intron dpr11 - chr3R 6538330 exon dpr11 - chr3R_4_6535001 chr3R_6535001 RAL-783 1047 chr3R 6551108 6551141 chr3R 6551202 6551235 14 94 3.5 3.0 3.2 3.3 127 chr3R 6551108 intron dpr11 - chr3R 6551172 intron dpr11 - chr3R 6551235 intron dpr11 - chr3R_14_6550001 chr3R_6550001 RAL-783 1048 chr3R 6582929 6582960 chr3R 6583012 6583043 7 82 2.0 1.0 1.5 2.8 114 chr3R 6582929 intron dpr11 - chr3R 6582986 intron dpr11 - chr3R 6583043 intron dpr11 - chr3R_7_6580001 chr3R_6580001 RAL-783 1049 chr3R 6698002 6698023 chr3R 6698081 6698102 4 79 2.0 2.5 2.2 1.2 100 chr3R 6698002 intergenic not near genes chr3R 6698052 intergenic not near genes chr3R 6698102 intergenic not near genes chr3R_4_6695001 chr3R_6695001 RAL-783 1050 chr3R 6717702 6717705 chr3R 6717828 6717842 5 133 0.0 4.0 2.0 1.7 140 chr3R 6717702 intron pb - chr3R 6717772 intron pb - chr3R 6717842 intron pb - chr3R_5_6715001 chr3R_6715001 RAL-783 1051 chr3R 6737502 6737532 chr3R 6739289 6739304 Doc 6 1784 0.5 2.5 1.5 2.4 1802 chr3R 6737502 intron pb - chr3R 6738403 intron pb - chr3R 6739304 intron pb - chr3R_6_6735001 chr3R_6735001 RAL-783 1052 chr3R 6782439 6782465 chr3R 6782517 6782543 5 78 2.0 3.0 2.5 1.4 104 chr3R 6782439 intergenic not near genes chr3R 6782491 intergenic not near genes chr3R 6782543 intergenic not near genes chr3R_5_6780001 chr3R_6780001 RAL-783 1053 chr3R 6828025 6828034 chr3R 6828101 6828110 5 76 1.5 2.0 1.8 1.8 85 chr3R 6828025 intron Scr - chr3R 6828068 intron Scr - chr3R 6828110 intron Scr - chr3R_5_6825001 chr3R_6825001 RAL-783 1054 chr3R 6862220 6862253 chr3R 6862306 6862340 9 86 1.0 1.0 1.0 4.5 120 chr3R 6862220 intergenic not near genes chr3R 6862280 intergenic not near genes chr3R 6862340 intergenic not near genes chr3R_9_6860001 chr3R_6860001 RAL-783 1055 chr3R 6912101 6912122 chr3R 6912212 6912233 5 111 2.5 0.0 1.2 2.3 132 chr3R 6912101 intron Antp - chr3R 6912167 intron Antp - chr3R 6912233 intron Antp - chr3R_5_6910001 chr3R_6910001 RAL-783 1056 chr3R 7012201 7012227 chr3R 7012279 7012305 8 77 1.0 3.0 2.0 2.7 104 chr3R 7012201 intergenic not near genes chr3R 7012253 intergenic not near genes chr3R 7012305 intergenic not near genes chr3R_8_7010001 chr3R_7010001 RAL-783 1057 chr3R 7051120 7051152 chr3R 7051199 7051231 5 79 0.5 0.5 0.5 3.3 111 chr3R 7051120 intergenic not near genes chr3R 7051176 intergenic not near genes chr3R 7051231 intergenic not near genes chr3R_5_7050001 chr3R_7050001 RAL-783 1058 chr3R 7095970 7095992 chr3R 7096053 7096075 9 84 3.0 3.0 3.0 2.2 105 chr3R 7095970 intergenic not near genes chr3R 7096022 intergenic not near genes chr3R 7096075 intergenic not near genes chr3R_9_7095001 chr3R_7095001 RAL-783 1059 chr3R 7103929 7103961 chr3R 7104028 7104060 15 98 3.0 3.0 3.0 3.8 131 chr3R 7103929 intron Alh - chr3R 7103994 intron Alh - chr3R 7104060 intron Alh - chr3R_15_7100001 chr3R_7100001 RAL-783 1060 chr3R 7385586 7385614 chr3R 7385662 7385673 8 72 2.5 5.5 4.0 1.6 87 chr3R 7385586 intergenic not near genes chr3R 7385630 intergenic not near genes chr3R 7385673 intergenic not near genes chr3R_8_7385001 chr3R_7385001 RAL-783 1061 chr3R 7447990 7448010 chr3R 7448068 7448088 5 78 6.0 2.0 4.0 1.0 98 chr3R 7447990 intergenic not near genes chr3R 7448039 intergenic not near genes chr3R 7448088 intergenic not near genes chr3R_5_7445001 chr3R_7445001 RAL-783 1062 chr3R 7464699 7464724 chr3R 7464785 7464808 11 85 1.0 4.5 2.8 2.9 109 chr3R 7464699 intergenic not near genes chr3R 7464754 intergenic not near genes chr3R 7464808 intergenic not near genes chr3R_11_7460001 chr3R_7460001 RAL-783 1063 chr3R 7677917 7677937 chr3R 7678029 7678050 7 113 0.0 2.0 1.0 3.5 133 chr3R 7677917 intron Nlg1 + chr3R 7677984 intron Nlg1 + chr3R 7678050 intron Nlg1 + chr3R_7_7675001 chr3R_7675001 RAL-783 1064 chr3R 7729467 7729499 chr3R 7737405 7737437 Stalker2 5 7938 1.0 1.5 1.2 2.3 7970 chr3R 7729467 intergenic not near genes chr3R 7733452 intergenic not near genes chr3R 7737437 intergenic not near genes chr3R_5_7730001 chr3R_7730001 RAL-783 1065 chr3R 7821715 7821747 chr3R 7821811 7821843 4 96 2.0 2.0 2.0 1.3 128 chr3R 7821715 intron CG34384 + chr3R 7821779 intron CG34384 + chr3R 7821843 intron CG34384 + chr3R_4_7820001 chr3R_7820001 RAL-783 1066 chr3R 7830299 7830320 chr3R 7830449 7830471 7 150 2.5 2.5 2.5 2.0 172 chr3R 7830299 intron CG34384 + chr3R 7830385 intron CG34384 + chr3R 7830471 intron CG34384 + chr3R_7_7830001 chr3R_7830001 RAL-783 1067 chr3R 7849645 7849674 chr3R 7850812 7850841 1360 5 1167 0.5 1.5 1.0 2.5 1196 chr3R 7849645 intron CG34384 + chr3R 7850243 intron CG34384 + chr3R 7850841 intron CG34384 + chr3R_5_7850001 chr3R_7850001 RAL-783 1068 chr3R 7973317 7973343 chr3R 7974379 7974405 1360 5 1062 0.5 2.5 1.5 2.0 1088 chr3R 7973317 intergenic not near genes chr3R 7973861 intergenic not near genes chr3R 7974405 intergenic CD98hc - chr3R_5_7970001 chr3R_7970001 RAL-783 1069 chr3R 8090271 8090299 chr3R 8090448 8090476 5 177 1.5 0.0 0.8 2.8 205 chr3R 8090271 5` UTR CR44330 + chr3R 8090374 intergenic CR44330 + chr3R 8090476 intergenic CR44330 + chr3R_5_8090001 chr3R_8090001 RAL-783 1070 chr3R 8140008 8140035 chr3R 8140093 8140119 9 85 3.5 1.5 2.5 2.6 111 chr3R 8140008 intergenic not near genes chr3R 8140064 intergenic not near genes chr3R 8140119 intergenic not near genes chr3R_9_8140001 chr3R_8140001 RAL-783 1071 chr3R 8156358 8156386 chr3R 8156437 8156467 9 79 4.0 3.5 3.8 1.9 109 chr3R 8156358 intron grn - chr3R 8156412 intron grn - chr3R 8156467 intron grn - chr3R_9_8155001 chr3R_8155001 RAL-783 1072 chr3R 8182654 8182689 chr3R 8182745 8182782 11 91 1.0 1.0 1.0 5.5 128 chr3R 8182654 intergenic not near genes chr3R 8182718 intergenic not near genes chr3R 8182782 intergenic not near genes chr3R_11_8180001 chr3R_8180001 RAL-783 1073 chr3R 8207568 8207584 chr3R 8208402 8208429 F-element 7 839 3.5 4.5 4.0 1.4 861 chr3R 8207568 intergenic not near genes chr3R 8207998 intergenic not near genes chr3R 8208429 intergenic not near genes chr3R_7_8205001 chr3R_8205001 RAL-783 1074 chr3R 8247894 8247923 chr3R 8247976 8248005 7 82 2.5 0.5 1.5 2.8 111 chr3R 8247894 3` UTR,3` UTR CG18749 +,CG33722 + chr3R 8247950 intron,intron CG18749 +,CG33722 + chr3R 8248005 3` UTR,3` UTR CG18749 +,CG33722 + chr3R_7_8245001 chr3R_8245001 RAL-783 1075 chr3R 8339246 8339247 chr3R 21907534 21907536 7 13568289 13.0 19.5 16.2 0.4 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_7_15120001 chr3R_15120001 RAL-783 1076 chr3R 8395275 8395307 chr3R 8395389 8395421 7 113 2.0 2.0 2.0 2.3 146 chr3R 8395275 intron CG45263 - chr3R 8395348 intron CG45263 - chr3R 8395421 intron CG45263 - chr3R_7_8395001 chr3R_8395001 RAL-783 1077 chr3R 8403024 8403040 chr3R 8412185 8412205 roo 5 9163 1.5 5.0 3.2 1.2 9181 chr3R 8403024 intron CG45263 - chr3R 8407614 intron CG45263 - chr3R 8412205 intron CG45263 - chr3R_5_8405001 chr3R_8405001 RAL-783 1078 chr3R 8517820 8517836 chr3R 8517891 8517921 9 83 1.5 2.0 1.8 3.2 101 chr3R 8517820 intergenic CG11737 + chr3R 8517870 5` UTR CG11737 + chr3R 8517921 5` UTR CG11737 + chr3R_9_8515001 chr3R_8515001 RAL-783 1079 chr3R 8534777 8534804 chr3R 8535034 8535061 7 257 3.0 3.0 3.0 1.8 284 chr3R 8534777 intergenic not near genes chr3R 8534919 intergenic not near genes chr3R 8535061 intergenic not near genes chr3R_7_8530001 chr3R_8530001 RAL-783 1080 chr3R 8570477 8570499 chr3R 8575141 8575149 HMS-Beagle 12 4664 2.5 3.0 2.8 3.2 4672 chr3R 8570477 intergenic not near genes chr3R 8572813 intergenic not near genes chr3R 8575149 intergenic not near genes chr3R_12_8570001 chr3R_8570001 RAL-783 1081 chr3R 8601779 8601797 chr3R 8610932 8610950 roo 6 9152 4.5 4.5 4.5 1.1 9171 chr3R 8601779 intron 5-HT2B + chr3R 8606364 intron 5-HT2B + chr3R 8610950 intron 5-HT2B + chr3R_6_8605001 chr3R_8605001 RAL-783 1082 chr3R 8621540 8621553 chr3R 8621617 8621629 5 77 5.0 5.0 5.0 0.8 89 chr3R 8621540 intron 5-HT2B + chr3R 8621584 intron 5-HT2B + chr3R 8621629 intron 5-HT2B + chr3R_5_8620001 chr3R_8620001 RAL-783 1083 chr3R 8636936 8636965 chr3R 8637239 8637268 9 300 3.0 1.0 2.0 3.0 332 chr3R 8636936 intergenic not near genes chr3R 8637102 intergenic not near genes chr3R 8637268 intergenic not near genes chr3R_9_8635001 chr3R_8635001 RAL-783 1084 chr3R 8670060 8670073 chr3R 8670162 8670175 8 102 5.5 5.5 5.5 1.2 115 chr3R 8670060 intron CG8036 + chr3R 8670118 intron CG8036 + chr3R 8670175 intron CG8036 + chr3R_8_8670001 chr3R_8670001 RAL-783 1085 chr3R 8707357 8707382 chr3R 8709798 8709823 jockey 5 2441 7.0 3.5 5.2 0.8 2466 chr3R 8707357 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709823 intergenic not near genes chr3R_5_8705001 chr3R_8705001 RAL-783 1086 chr3R 8917889 8917912 chr3R 8917969 8917992 9 79 2.0 4.5 3.2 2.1 103 chr3R 8917889 intron pyd - chr3R 8917940 intron pyd - chr3R 8917992 intron pyd - chr3R_9_8915001 chr3R_8915001 RAL-783 1087 chr3R 9095697 9095720 chr3R 9096016 9096039 10 318 5.5 2.5 4.0 2.0 342 chr3R 9095697 intron pum - chr3R 9095868 intron pum - chr3R 9096039 intron pum - chr3R_10_9095001 chr3R_9095001 RAL-783 1088 chr3R 9141176 9141192 chr3R 9141267 9141282 7 90 1.5 4.5 3.0 1.8 106 chr3R 9141176 intron pum - chr3R 9141229 intron pum - chr3R 9141282 intron pum - chr3R_7_9140001 chr3R_9140001 RAL-783 1089 chr3R 9170330 9170357 chr3R 9170781 9170811 7 453 2.0 3.0 2.5 2.0 481 chr3R 9170330 intron pum - chr3R 9170570 intron pum - chr3R 9170811 intron pum - chr3R_7_9170001 chr3R_9170001 RAL-783 1090 chr3R 9227932 9227962 chr3R 9228046 9228076 9 114 3.0 0.5 1.8 3.2 144 chr3R 9227932 intron pum - chr3R 9228004 intron pum - chr3R 9228076 intron pum - chr3R_9_9225001 chr3R_9225001 RAL-783 1091 chr3R 9278780 9278808 chr3R 9284039 9284068 Rt1a 9 5259 4.5 9.5 7.0 1.1 5288 chr3R 9278780 intergenic not near genes chr3R 9281424 intergenic not near genes chr3R 9284068 intergenic not near genes chr3R_9_9280001 chr3R_9280001 RAL-783 1092 chr3R 9284877 9284906 chr3R 9284960 9284990 6 84 1.5 3.0 2.2 1.9 113 chr3R 9284877 intergenic not near genes chr3R 9284934 intergenic not near genes chr3R 9284990 intergenic not near genes chr3R_6_9280001 chr3R_9280001 RAL-783 1093 chr3R 9319590 9319595 chr3R 9320025 9320030 jockey 5 434 4.5 3.5 4.0 1.0 440 chr3R 9319590 intron CG8861 - chr3R 9319810 intron CG8861 - chr3R 9320030 intron CG8861 - chr3R_5_9315001 chr3R_9315001 RAL-783 1094 chr3R 9739911 9739944 chr3R 9741857 9741889 9 1946 17.0 17.0 17.0 0.5 1978 chr3R 9739911 5` UTR CG12950 - chr3R 9740900 5` UTR Pnn + chr3R 9741889 exon Pnn + chr3R_9_9740001 chr3R_9740001 RAL-783 1095 chr3R 9739245 9739258 chr3R 9742312 9742332 4 3069 9.5 5.5 7.5 0.5 3087 chr3R 9739245 intron CG12950 - chr3R 9740788 intergenic Pnn + chr3R 9742332 3` UTR Pnn + chr3R_4_9740001 chr3R_9740001 RAL-783 1096 chr3R 9765926 9765942 chr3R 9766000 9766015 5 73 0.0 5.5 2.8 1.3 89 chr3R 9765926 3` UTR CG8478 + chr3R 9765970 3` UTR CG8478 + chr3R 9766015 3` UTR CG8478 + chr3R_5_9765001 chr3R_9765001 RAL-783 1097 chr3R 10073781 10073803 chr3R 10073888 10073912 6 108 4.0 5.0 4.5 1.1 131 chr3R 10073781 intergenic nerfin-2 +,CG5361 - chr3R 10073846 3` UTR CG5361 - chr3R 10073912 exon CG5361 - chr3R_6_10070001 chr3R_10070001 RAL-783 1098 chr3R 10192285 10192302 chr3R 10192471 10192488 7 185 3.0 4.0 3.5 1.6 203 chr3R 10192285 intron Syn + chr3R 10192386 intron Syn + chr3R 10192488 intron Syn + chr3R_7_10190001 chr3R_10190001 RAL-783 1099 chr3R 10231148 10231180 chr3R 10231618 10231650 12 470 1.5 3.5 2.5 3.4 502 chr3R 10231148 intron CG42795 + chr3R 10231399 intron CG42795 + chr3R 10231650 intron CG42795 + chr3R_12_10230001 chr3R_10230001 RAL-783 1100 chr3R 10306959 10306986 chr3R 10312218 10312245 9 5259 19.5 5.0 12.2 0.7 5286 chr3R 10306959 exon CG43143 + chr3R 10309602 exon CG6293 - chr3R 10312245 3` UTR Bruce - chr3R_9_10305001 chr3R_10305001 RAL-783 1101 chr3R 10417475 10417496 chr3R 10417810 10417831 10 335 3.5 1.5 2.5 2.9 356 chr3R 10417475 intergenic not near genes chr3R 10417653 intergenic not near genes chr3R 10417831 intergenic not near genes chr3R_10_10415001 chr3R_10415001 RAL-783 1102 chr3R 10531875 10531898 chr3R 10531956 10531979 4 81 4.0 2.0 3.0 1.0 104 chr3R 10531875 intron hth - chr3R 10531927 intron hth - chr3R 10531979 intron hth - chr3R_4_10530001 chr3R_10530001 RAL-783 1103 chr3R 10716440 10716460 chr3R 10716588 10716607 6 148 0.5 4.5 2.5 1.7 167 chr3R 10716440 intergenic not near genes chr3R 10716524 intergenic not near genes chr3R 10716607 intergenic not near genes chr3R_6_10715001 chr3R_10715001 RAL-783 1104 chr3R 10723501 10723532 chr3R 10723585 10723615 5 84 1.5 1.5 1.5 2.0 114 chr3R 10723501 intergenic not near genes chr3R 10723558 intergenic not near genes chr3R 10723615 intergenic not near genes chr3R_5_10720001 chr3R_10720001 RAL-783 1105 chr3R 10804173 10804202 chr3R 10811705 10811733 17.6 6 7532 1.5 2.5 2.0 2.0 7560 chr3R 10804173 intergenic CG14692 - chr3R 10807953 intergenic not near genes chr3R 10811733 3` UTR CG14693 - chr3R_6_10805001 chr3R_10805001 RAL-783 1106 chr3R 10875274 10875302 chr3R 10875358 10875387 4 84 0.5 1.0 0.8 2.2 113 chr3R 10875274 3` UTR CG4596 + chr3R 10875330 3` UTR CG4596 + chr3R 10875387 3` UTR CG4596 + chr3R_4_10875001 chr3R_10875001 RAL-783 1107 chr3R 10886876 10886906 chr3R 10886954 10886986 6 79 0.5 3.0 1.8 2.1 110 chr3R 10886876 intron Leash + chr3R 10886931 intron Leash + chr3R 10886986 intron Leash + chr3R_6_10885001 chr3R_10885001 RAL-783 1108 chr3R 10900497 10900514 chr3R 10900958 10900975 6 461 2.5 3.0 2.8 1.6 478 chr3R 10900497 intergenic not near genes chr3R 10900736 intergenic not near genes chr3R 10900975 intergenic not near genes chr3R_6_10900001 chr3R_10900001 RAL-783 1109 chr3R 10904912 10904935 chr3R 10905114 10905139 7 204 3.0 2.0 2.5 2.0 227 chr3R 10904912 intergenic not near genes chr3R 10905026 intergenic not near genes chr3R 10905139 intergenic not near genes chr3R_7_10905001 chr3R_10905001 RAL-783 1110 chr3R 10920043 10920079 chr3R 10920121 10920157 6 78 1.5 3.5 2.5 1.7 114 chr3R 10920043 intergenic not near genes chr3R 10920100 intergenic not near genes chr3R 10920157 intergenic not near genes chr3R_6_10920001 chr3R_10920001 RAL-783 1111 chr3R 10954398 10954432 chr3R 10954586 10954617 7 185 2.0 1.5 1.8 2.5 219 chr3R 10954398 intergenic not near genes chr3R 10954508 intergenic not near genes chr3R 10954617 intergenic not near genes chr3R_7_10950001 chr3R_10950001 RAL-783 1112 chr3R 10974115 10974146 chr3R 10974207 10974211 7 88 2.0 2.0 2.0 2.3 96 chr3R 10974115 intron CG34114 + chr3R 10974163 intron CG34114 + chr3R 10974211 intron CG34114 + chr3R_7_10970001 chr3R_10970001 RAL-783 1113 chr3R 11056897 11056907 chr3R 11056975 11056985 5 77 1.5 0.0 0.8 2.8 88 chr3R 11056897 intergenic not near genes chr3R 11056941 intergenic not near genes chr3R 11056985 intergenic not near genes chr3R_5_11055001 chr3R_11055001 RAL-783 1114 chr3R 11085459 11085488 chr3R 11085536 11085565 6 77 0.0 0.5 0.2 5.0 106 chr3R 11085459 3` UTR CR44940 - chr3R 11085512 intergenic CR44940 - chr3R 11085565 intergenic CR44940 - chr3R_6_11085001 chr3R_11085001 RAL-783 1115 chr3R 11097301 11097332 chr3R 11097686 11097717 8 382 2.0 2.5 2.2 2.5 416 chr3R 11097301 intergenic not near genes chr3R 11097509 intergenic not near genes chr3R 11097717 intergenic not near genes chr3R_8_11095001 chr3R_11095001 RAL-783 1116 chr3R 11102325 11102352 chr3R 11102405 11102425 6 79 0.0 5.0 2.5 1.7 100 chr3R 11102325 intergenic not near genes chr3R 11102375 intergenic not near genes chr3R 11102425 intergenic not near genes chr3R_6_11100001 chr3R_11100001 RAL-783 1117 chr3R 11103171 11103179 chr3R 11103253 11103261 5 82 0.0 0.0 0.0 5.0 90 chr3R 11103171 intergenic not near genes chr3R 11103216 intergenic not near genes chr3R 11103261 intergenic not near genes chr3R_5_11100001 chr3R_11100001 RAL-783 1118 chr3R 11155049 11155063 chr3R 11155127 11155141 8 78 1.5 2.0 1.8 2.9 92 chr3R 11155049 intron Ugt86Dc + chr3R 11155095 intron Ugt86Dc + chr3R 11155141 intron Ugt86Dc + chr3R_8_11155001 chr3R_11155001 RAL-783 1119 chr3R 11174604 11174614 chr3R 11175318 11175328 6 714 12.0 19.5 15.8 0.4 724 chr3R 11174604 exon Ugt86Dj - chr3R 11174966 intron Ugt86Dj - chr3R 11175328 exon Ugt86Dj - chr3R_6_11170001 chr3R_11170001 RAL-783 1120 chr3R 11197984 11198017 chr3R 11198083 11198100 7 97 2.5 2.0 2.2 2.2 116 chr3R 11197984 intron cu + chr3R 11198042 intron cu + chr3R 11198100 intron cu + chr3R_7_11195001 chr3R_11195001 RAL-783 1121 chr3R 11284946 11284972 chr3R 11285030 11285055 4 84 2.0 2.5 2.2 1.2 109 chr3R 11284946 intron CR31386 - chr3R 11285000 intron CR31386 - chr3R 11285055 intron CR31386 - chr3R_4_11285001 chr3R_11285001 RAL-783 1122 chr3R 11306397 11306410 chr3R 11307066 11307093 4 680 1.5 3.5 2.5 1.1 696 chr3R 11306397 intergenic not near genes chr3R 11306745 intergenic not near genes chr3R 11307093 intergenic not near genes chr3R_4_11305001 chr3R_11305001 RAL-783 1123 chr3R 11313232 11313260 chr3R 11313321 11313346 9 89 1.0 2.0 1.5 3.6 114 chr3R 11313232 intergenic not near genes chr3R 11313289 intergenic not near genes chr3R 11313346 intergenic not near genes chr3R_9_11310001 chr3R_11310001 RAL-783 1124 chr3R 11342542 11342568 chr3R 11342618 11342644 6 76 2.0 1.5 1.8 2.1 102 chr3R 11342542 intron pros + chr3R 11342593 intron pros + chr3R 11342644 intron pros + chr3R_6_11340001 chr3R_11340001 RAL-783 1125 chr3R 11481734 11481756 chr3R 11481815 11481838 6 82 2.5 1.5 2.0 2.0 104 chr3R 11481734 intergenic not near genes chr3R 11481786 intergenic not near genes chr3R 11481838 intergenic not near genes chr3R_6_11480001 chr3R_11480001 RAL-783 1126 chr3R 11662260 11662284 chr3R 11662362 11662364 4 96 3.0 5.5 4.2 0.8 104 chr3R 11662260 intron CG42327 + chr3R 11662312 intron CG42327 + chr3R 11662364 intron CG42327 + chr3R_4_11660001 chr3R_11660001 RAL-783 1127 chr3R 11718589 11718613 chr3R 11718817 11718835 6 225 2.0 0.0 1.0 3.0 246 chr3R 11718589 intergenic not near genes chr3R 11718712 intergenic not near genes chr3R 11718835 intergenic not near genes chr3R_6_11715001 chr3R_11715001 RAL-783 1128 chr3R 11734162 11734188 chr3R 11734279 11734305 11 116 3.0 2.5 2.8 2.9 143 chr3R 11734162 intergenic not near genes chr3R 11734234 intergenic not near genes chr3R 11734305 intergenic not near genes chr3R_11_11730001 chr3R_11730001 RAL-783 1129 chr3R 11825873 11825895 chr3R 11826301 11826323 4 428 4.0 0.0 2.0 1.3 450 chr3R 11825873 intron CG6959 - chr3R 11826098 intron CG6959 - chr3R 11826323 intron CG6959 - chr3R_4_11825001 chr3R_11825001 RAL-783 1130 chr3R 11841061 11841092 chr3R 11846252 11846280 BS 4 5189 4.0 3.5 3.8 0.8 5219 chr3R 11841061 intron CG6959 - chr3R 11843670 intron CG6959 - chr3R 11846280 intron CG6959 - chr3R_4_11840001 chr3R_11840001 RAL-783 1131 chr3R 11965176 11965209 chr3R 11965417 11965449 8 240 0.5 3.5 2.0 2.7 273 chr3R 11965176 3` UTR CG12213 - chr3R 11965312 3` UTR CG12213 - chr3R 11965449 exon CG12213 - chr3R_8_11965001 chr3R_11965001 RAL-783 1132 chr3R 12022887 12022916 chr3R 12025064 12025093 pogo 9 2175 1.5 4.0 2.8 2.4 2206 chr3R 12022887 intergenic not near genes chr3R 12023990 intergenic not near genes chr3R 12025093 intergenic not near genes chr3R_9_12020001 chr3R_12020001 RAL-783 1133 chr3R 12045178 12045191 chr3R 12045254 12045266 4 76 4.5 3.0 3.8 0.8 88 chr3R 12045178 intergenic not near genes chr3R 12045222 intergenic not near genes chr3R 12045266 intergenic not near genes chr3R_4_12045001 chr3R_12045001 RAL-783 1134 chr3R 12082002 12082027 chr3R 12082078 12082103 5 76 2.5 1.5 2.0 1.7 101 chr3R 12082002 intron CG14741 - chr3R 12082052 intron CG14741 - chr3R 12082103 intron CG14741 - chr3R_5_12080001 chr3R_12080001 RAL-783 1135 chr3R 12118818 12118832 chr3R 12118903 12118917 4 85 2.5 4.5 3.5 0.9 99 chr3R 12118818 intergenic not near genes chr3R 12118868 intergenic not near genes chr3R 12118917 intergenic not near genes chr3R_4_12115001 chr3R_12115001 RAL-783 1136 chr3R 12183176 12183203 chr3R 12183262 12183289 6 83 4.5 2.0 3.2 1.4 113 chr3R 12183176 intergenic not near genes chr3R 12183232 intergenic not near genes chr3R 12183289 intergenic not near genes chr3R_6_12180001 chr3R_12180001 RAL-783 1137 chr3R 12314238 12314261 chr3R 12314347 12314375 7 113 3.5 3.0 3.2 1.7 137 chr3R 12314238 intergenic not near genes chr3R 12314306 intergenic not near genes chr3R 12314375 intergenic not near genes chr3R_7_12310001 chr3R_12310001 RAL-783 1138 chr3R 12450308 12450333 chr3R 12450483 12450508 4 175 2.0 2.5 2.2 1.2 200 chr3R 12450308 intron CG18549 + chr3R 12450408 intron CG18549 + chr3R 12450508 intron CG18549 + chr3R_4_12450001 chr3R_12450001 RAL-783 1139 chr3R 12538198 12538213 chr3R 12538274 12538291 4 78 0.0 3.0 1.5 1.6 93 chr3R 12538198 intron Octbeta3R - chr3R 12538244 intron Octbeta3R - chr3R 12538291 intron Octbeta3R - chr3R_4_12535001 chr3R_12535001 RAL-783 1140 chr3R 12599371 12599404 chr3R 12599454 12599487 8 80 4.0 3.5 3.8 1.7 116 chr3R 12599371 intergenic not near genes chr3R 12599429 intergenic not near genes chr3R 12599487 intergenic not near genes chr3R_8_12595001 chr3R_12595001 RAL-783 1141 chr3R 12733479 12733509 chr3R 12733555 12733586 11 75 4.0 0.5 2.2 3.4 107 chr3R 12733479 intergenic not near genes chr3R 12733532 intergenic not near genes chr3R 12733586 intergenic not near genes chr3R_11_12730001 chr3R_12730001 RAL-783 1142 chr3R 12876959 12876978 chr3R 12877042 12877061 5 82 4.0 3.0 3.5 1.1 102 chr3R 12876959 intergenic not near genes chr3R 12877010 intergenic not near genes chr3R 12877061 intergenic not near genes chr3R_5_12875001 chr3R_12875001 RAL-783 1143 chr3R 12920153 12920184 chr3R 12925356 12925356 copia 9 5199 1.0 4.0 2.5 2.6 5203 chr3R 12920153 intron beat-Vb + chr3R 12922754 intron beat-Vb + chr3R 12925356 intron beat-Vb + chr3R_9_12920001 chr3R_12920001 RAL-783 1144 chr3R 13061879 13061906 chr3R 13061974 13061993 8 94 2.0 3.0 2.5 2.3 114 chr3R 13061879 intron sim + chr3R 13061936 intron sim + chr3R 13061993 intron sim + chr3R_8_13060001 chr3R_13060001 RAL-783 1145 chr3R 13067005 13067130 chr3R 13067092 13067206 9 78 0.0 0.0 0.0 9.0 201 chr3R 13067005 intron sim + chr3R 13067106 intron sim + chr3R 13067206 intron sim + chr3R_9_13065001 chr3R_13065001 RAL-783 1146 chr3R 13075362 13075384 chr3R 13075442 13075465 5 81 0.0 2.0 1.0 2.5 103 chr3R 13075362 intron sim + chr3R 13075414 intron sim + chr3R 13075465 intron sim + chr3R_5_13075001 chr3R_13075001 RAL-783 1147 chr3R 13104419 13104419 chr3R 21907535 21907536 4 8803116 22.5 20.0 21.2 0.2 8803117 chr3R 13104419 intron timeout + chr3R 17505978 intergenic Dscam3 - chr3R 21907536 intergenic CG6678 + chr3R_4_17505001 chr3R_17505001 RAL-783 1148 chr3R 13114408 13114426 chr3R 13114501 13114506 4 90 4.5 3.0 3.8 0.8 98 chr3R 13114408 intron timeout + chr3R 13114457 intron timeout + chr3R 13114506 intron timeout + chr3R_4_13110001 chr3R_13110001 RAL-783 1149 chr3R 13143052 13143066 chr3R 13148615 13148629 mdg3 13 5570 3.0 3.5 3.2 3.1 5577 chr3R 13143052 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148629 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_13_13145001 chr3R_13145001 RAL-783 1150 chr3R 13195959 13195981 chr3R 13196045 13196076 7 93 2.5 2.5 2.5 2.0 117 chr3R 13195959 intergenic not near genes chr3R 13196018 intergenic not near genes chr3R 13196076 intergenic not near genes chr3R_7_13195001 chr3R_13195001 RAL-783 1151 chr3R 13248652 13248680 chr3R 13248751 13248779 6 99 2.5 4.5 3.5 1.3 127 chr3R 13248652 intron Ace - chr3R 13248716 intron Ace - chr3R 13248779 intron Ace - chr3R_6_13245001 chr3R_13245001 RAL-783 1152 chr3R 13260728 13260741 chr3R 13260857 13260871 5 130 5.5 5.0 5.2 0.8 143 chr3R 13260728 intron CG11686 + chr3R 13260800 intron CG11686 + chr3R 13260871 intron CG11686 + chr3R_5_13260001 chr3R_13260001 RAL-783 1153 chr3R 13274211 13274249 chr3R 13274290 13274328 15 78 2.0 1.5 1.8 5.4 117 chr3R 13274211 intergenic not near genes chr3R 13274270 intergenic not near genes chr3R 13274328 intergenic not near genes chr3R_15_13270001 chr3R_13270001 RAL-783 1154 chr3R 13305656 13305686 chr3R 13305743 13305773 8 86 1.0 1.5 1.2 3.6 117 chr3R 13305656 intron CG32473 + chr3R 13305714 intron CG32473 + chr3R 13305773 intron CG32473 + chr3R_8_13305001 chr3R_13305001 RAL-783 1155 chr3R 13306130 13306145 chr3R 13306517 13306532 7 387 4.0 2.0 3.0 1.8 402 chr3R 13306130 intron CG32473 + chr3R 13306331 intron CG32473 + chr3R 13306532 intron CG32473 + chr3R_7_13305001 chr3R_13305001 RAL-783 1156 chr3R 13323956 13323987 chr3R 13324067 13324097 9 111 2.0 2.5 2.2 2.8 141 chr3R 13323956 intergenic not near genes chr3R 13324026 intergenic not near genes chr3R 13324097 intergenic not near genes chr3R_9_13320001 chr3R_13320001 RAL-783 1157 chr3R 13326933 13326953 chr3R 13327028 13327048 4 93 1.5 4.5 3.0 1.0 115 chr3R 13326933 intergenic not near genes chr3R 13326990 intergenic not near genes chr3R 13327048 intergenic not near genes chr3R_4_13325001 chr3R_13325001 RAL-783 1158 chr3R 13356095 13356123 chr3R 13356180 13356208 8 85 1.0 2.5 1.8 2.9 113 chr3R 13356095 intergenic not near genes chr3R 13356152 intergenic not near genes chr3R 13356208 intergenic not near genes chr3R_8_13355001 chr3R_13355001 RAL-783 1159 chr3R 13391632 13391664 chr3R 13391709 13391742 15 76 3.5 4.5 4.0 3.0 110 chr3R 13391632 intron CCHa2 - chr3R 13391687 intron CCHa2 - chr3R 13391742 intron CCHa2 - chr3R_15_13390001 chr3R_13390001 RAL-783 1160 chr3R 13505858 13505866 chr3R 13505934 13505942 4 76 9.5 4.0 6.8 0.5 84 chr3R 13505858 intergenic not near genes chr3R 13505900 intergenic not near genes chr3R 13505942 intergenic not near genes chr3R_4_13505001 chr3R_13505001 RAL-783 1161 chr3R 13562615 13562646 chr3R 13562722 13562753 4 107 2.5 2.5 2.5 1.1 138 chr3R 13562615 intergenic not near genes chr3R 13562684 intergenic not near genes chr3R 13562753 intergenic not near genes chr3R_4_13560001 chr3R_13560001 RAL-783 1162 chr3R 13598084 13598115 chr3R 13598162 13598192 9 78 1.0 2.5 1.8 3.2 108 chr3R 13598084 intergenic not near genes chr3R 13598138 intergenic not near genes chr3R 13598192 intergenic not near genes chr3R_9_13595001 chr3R_13595001 RAL-783 1163 chr3R 13603061 13603074 chr3R 13603152 13603164 4 90 3.5 1.0 2.2 1.2 103 chr3R 13603061 intergenic not near genes chr3R 13603112 intergenic not near genes chr3R 13603164 intergenic not near genes chr3R_4_13600001 chr3R_13600001 RAL-783 1164 chr3R 13672940 13672978 chr3R 13673018 13673052 12 77 2.0 0.0 1.0 6.0 112 chr3R 13672940 intron Task6 - chr3R 13672996 intron Task6 - chr3R 13673052 intron Task6 - chr3R_12_13670001 chr3R_13670001 RAL-783 1165 chr3R 13693028 13693028 chr3R 21907534 21907535 4 8214507 10.0 19.5 14.8 0.3 8214507 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907535 intergenic CG6678 + chr3R_4_17800001 chr3R_17800001 RAL-783 1166 chr3R 13803898 13803904 chr3R 13804119 13804125 4 221 0.0 0.0 0.0 4.0 227 chr3R 13803898 intergenic not near genes chr3R 13804012 intergenic not near genes chr3R 13804125 intergenic not near genes chr3R_4_13800001 chr3R_13800001 RAL-783 1167 chr3R 13863692 13863716 chr3R 13863768 13863768 4 76 2.5 4.0 3.2 1.0 76 chr3R 13863692 intergenic not near genes chr3R 13863730 intergenic not near genes chr3R 13863768 intergenic not near genes chr3R_4_13860001 chr3R_13860001 RAL-783 1168 chr3R 13945856 13945890 chr3R 13946179 13946212 14 322 2.0 4.0 3.0 3.5 356 chr3R 13945856 intergenic Art6 - chr3R 13946034 intergenic Art6 - chr3R 13946212 intergenic Art6 - chr3R_14_13945001 chr3R_13945001 RAL-783 1169 chr3R 13975370 13975403 chr3R 13975450 13975483 6 80 0.5 0.5 0.5 4.0 113 chr3R 13975370 intron rdx - chr3R 13975426 intron rdx - chr3R 13975483 intron rdx - chr3R_6_13975001 chr3R_13975001 RAL-783 1170 chr3R 14047939 14047971 chr3R 14048026 14048056 5 87 2.5 4.0 3.2 1.2 117 chr3R 14047939 intergenic not near genes chr3R 14047998 intergenic not near genes chr3R 14048056 intergenic not near genes chr3R_5_14045001 chr3R_14045001 RAL-783 1171 chr3R 14058123 14058155 chr3R 14058243 14058275 5 120 1.0 2.5 1.8 1.8 152 chr3R 14058123 intron foxo + chr3R 14058199 intron foxo + chr3R 14058275 intron foxo + chr3R_5_14055001 chr3R_14055001 RAL-783 1172 chr3R 14067142 14067151 chr3R 14067221 14067230 7 79 4.5 0.5 2.5 2.0 88 chr3R 14067142 exon foxo + chr3R 14067186 intron foxo + chr3R 14067230 intron foxo + chr3R_7_14065001 chr3R_14065001 RAL-783 1173 chr3R 14083400 14083419 chr3R 14083501 14083520 5 101 1.0 0.0 0.5 3.3 120 chr3R 14083400 intron foxo + chr3R 14083460 intron foxo + chr3R 14083520 intron foxo + chr3R_5_14080001 chr3R_14080001 RAL-783 1174 chr3R 14117436 14117472 chr3R 14117512 14117548 7 76 1.0 0.5 0.8 3.9 112 chr3R 14117436 intron Kif19A - chr3R 14117492 intron Kif19A - chr3R 14117548 intron Kif19A - chr3R_7_14115001 chr3R_14115001 RAL-783 1175 chr3R 14174955 14174993 chr3R 14175042 14175079 19 86 2.0 3.0 2.5 5.4 124 chr3R 14174955 3` UTR Dop1R1 - chr3R 14175017 3` UTR Dop1R1 - chr3R 14175079 3` UTR Dop1R1 - chr3R_19_14175001 chr3R_14175001 RAL-783 1176 chr3R 14194441 14194461 chr3R 14203585 14203610 roo 4 9148 2.0 3.0 2.5 1.1 9169 chr3R 14194441 intron Dop1R1 - chr3R 14199026 intron Dop1R1 - chr3R 14203610 intron Dop1R1 - chr3R_4_14195001 chr3R_14195001 RAL-783 1177 chr3R 14253710 14253719 chr3R 14253789 14253798 6 79 1.0 2.5 1.8 2.1 88 chr3R 14253710 intron Aats-met - chr3R 14253754 intron Aats-met - chr3R 14253798 intron Aats-met - chr3R_6_14250001 chr3R_14250001 RAL-783 1178 chr3R 14278425 14278450 chr3R 14278507 14278532 5 81 1.0 2.5 1.8 1.8 107 chr3R 14278425 intron trx - chr3R 14278478 intron trx - chr3R 14278532 intron trx - chr3R_5_14275001 chr3R_14275001 RAL-783 1179 chr3R 14364068 14364091 chr3R 14364135 14364167 4 74 3.5 0.5 2.0 1.3 99 chr3R 14364068 intron NK7.1 - chr3R 14364118 intron NK7.1 - chr3R 14364167 intron NK7.1 - chr3R_4_14360001 chr3R_14360001 RAL-783 1180 chr3R 14704385 14704416 chr3R 14704462 14704493 9 77 2.0 2.5 2.2 2.8 108 chr3R 14704385 intron kibra - chr3R 14704439 intron kibra - chr3R 14704493 intron kibra - chr3R_9_14700001 chr3R_14700001 RAL-783 1181 chr3R 14810680 14810696 chr3R 14810811 14810827 4 131 0.5 1.5 1.0 2.0 147 chr3R 14810680 intron btsz - chr3R 14810754 intron btsz - chr3R 14810827 intron btsz - chr3R_4_14810001 chr3R_14810001 RAL-783 1182 chr3R 14842564 14842599 chr3R 14842648 14842680 6 81 2.5 4.0 3.2 1.4 116 chr3R 14842564 intron btsz - chr3R 14842622 intron btsz - chr3R 14842680 intron btsz - chr3R_6_14840001 chr3R_14840001 RAL-783 1183 chr3R 14954824 14954839 chr3R 14955029 14955051 4 210 1.0 1.5 1.2 1.8 227 chr3R 14954824 intergenic not near genes chr3R 14954938 intergenic not near genes chr3R 14955051 intergenic not near genes chr3R_4_14950001 chr3R_14950001 RAL-783 1184 chr3R 15017502 15017531 chr3R 15017787 15017815 7 285 3.5 2.5 3.0 1.8 313 chr3R 15017502 intergenic not near genes chr3R 15017658 intergenic not near genes chr3R 15017815 intergenic not near genes chr3R_7_15015001 chr3R_15015001 RAL-783 1185 chr3R 15075234 15075255 chr3R 15075318 15075339 4 84 0.5 1.5 1.0 2.0 105 chr3R 15075234 intron dpr9 - chr3R 15075286 intron dpr9 - chr3R 15075339 intron dpr9 - chr3R_4_15075001 chr3R_15075001 RAL-783 1186 chr3R 15079809 15079831 chr3R 15080050 15080072 pogo 6 241 2.0 0.0 1.0 3.0 263 chr3R 15079809 3` UTR CG6966 - chr3R 15079940 3` UTR CG6966 - chr3R 15080072 3` UTR CG6966 - chr3R_6_15075001 chr3R_15075001 RAL-783 1187 chr3R 15094945 15094975 chr3R 15095372 15095399 16 424 1.0 2.5 1.8 5.7 454 chr3R 15094945 5` UTR CG6966 - chr3R 15095172 5` UTR CG6966 - chr3R 15095399 5` UTR CG6966 - chr3R_16_15095001 chr3R_15095001 RAL-783 1188 chr3R 15132060 15132073 chr3R 15135120 15135133 Juan 10 3060 7.0 4.5 5.8 1.5 3073 chr3R 15132060 intergenic CG42788 - chr3R 15133596 intergenic not near genes chr3R 15135133 intergenic CG6912 - chr3R_10_15130001 chr3R_15130001 RAL-783 1189 chr3R 15156603 15156635 chr3R 15156684 15156715 10 79 3.0 0.0 1.5 4.0 112 chr3R 15156603 intron Gyc88E + chr3R 15156659 intron Gyc88E + chr3R 15156715 intron Gyc88E + chr3R_10_15155001 chr3R_15155001 RAL-783 1190 chr3R 15162548 15162575 chr3R 15167316 15167328 F-element 4 4764 3.5 0.0 1.8 1.4 4780 chr3R 15162548 intron Gyc88E + chr3R 15164938 intron Gyc88E + chr3R 15167328 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-783 1191 chr3R 15167813 15167838 chr3R 15167970 15167995 10 157 4.5 2.5 3.5 2.2 182 chr3R 15167813 intron Gyc88E + chr3R 15167904 intron Gyc88E + chr3R 15167995 intron Gyc88E + chr3R_10_15165001 chr3R_15165001 RAL-783 1192 chr3R 15225300 15225332 chr3R 15225380 15225412 10 79 1.0 2.5 1.8 3.6 112 chr3R 15225300 5` UTR CG31344 - chr3R 15225356 intergenic CG31344 -,Caf1 + chr3R 15225412 intergenic CG31344 -,Caf1 + chr3R_10_15225001 chr3R_15225001 RAL-783 1193 chr3R 15372322 15372347 chr3R 15372398 15372409 5 73 2.5 1.5 2.0 1.7 87 chr3R 15372322 intron Ccm3 + chr3R 15372366 intron Ccm3 + chr3R 15372409 exon Ccm3 + chr3R_5_15370001 chr3R_15370001 RAL-783 1194 chr3R 15406135 15406171 chr3R 15406214 15406251 4 77 0.5 0.0 0.2 3.3 116 chr3R 15406135 intron CG6125 - chr3R 15406193 intron CG6125 - chr3R 15406251 intron CG6125 - chr3R_4_15405001 chr3R_15405001 RAL-783 1195 chr3R 15416262 15416270 chr3R 15416342 15416350 4 80 3.0 3.0 3.0 1.0 88 chr3R 15416262 3` UTR Atx2 + chr3R 15416306 3` UTR Atx2 + chr3R 15416350 3` UTR Atx2 + chr3R_4_15415001 chr3R_15415001 RAL-783 1196 chr3R 15504177 15504196 chr3R 15504265 15504286 4 88 2.5 0.5 1.5 1.6 109 chr3R 15504177 intergenic not near genes chr3R 15504232 intergenic not near genes chr3R 15504286 intergenic not near genes chr3R_4_15500001 chr3R_15500001 RAL-783 1197 chr3R 15601166 15601195 chr3R 15608688 15608717 412 10 7521 2.5 4.5 3.5 2.2 7551 chr3R 15601166 intergenic not near genes chr3R 15604942 intergenic not near genes chr3R 15608717 intergenic not near genes chr3R_10_15600001 chr3R_15600001 RAL-783 1198 chr3R 15608793 15608819 chr3R 15609022 15609046 6 229 6.0 3.0 4.5 1.1 253 chr3R 15608793 intergenic not near genes chr3R 15608920 intergenic not near genes chr3R 15609046 intergenic not near genes chr3R_6_15605001 chr3R_15605001 RAL-783 1199 chr3R 15618743 15618763 chr3R 15626217 15626234 blood 9 7473 0.5 4.5 2.5 2.6 7491 chr3R 15618743 intergenic not near genes chr3R 15622488 intergenic not near genes chr3R 15626234 intergenic not near genes chr3R_9_15620001 chr3R_15620001 RAL-783 1200 chr3R 15642555 15642562 chr3R 15642633 15642640 4 78 3.0 1.5 2.2 1.2 85 chr3R 15642555 intergenic not near genes chr3R 15642598 intergenic not near genes chr3R 15642640 intergenic not near genes chr3R_4_15640001 chr3R_15640001 RAL-783 1201 chr3R 15668012 15668039 chr3R 15668101 15668128 5 89 2.0 3.5 2.8 1.3 116 chr3R 15668012 intron,5` UTR pxb +,CR43849 + chr3R 15668070 intron,5` UTR pxb +,CR43849 + chr3R 15668128 intron,5` UTR pxb +,CR43849 + chr3R_5_15665001 chr3R_15665001 RAL-783 1202 chr3R 15691187 15691322 chr3R 15691290 15691409 6 90 0.5 1.0 0.8 3.3 222 chr3R 15691187 intergenic not near genes chr3R 15691298 intergenic not near genes chr3R 15691409 intergenic not near genes chr3R_6_15690001 chr3R_15690001 RAL-783 1203 chr3R 15743872 15743896 chr3R 15743984 15744008 9 112 1.0 1.5 1.2 4.1 136 chr3R 15743872 intergenic not near genes chr3R 15743940 intergenic not near genes chr3R 15744008 intergenic not near genes chr3R_9_15740001 chr3R_15740001 RAL-783 1204 chr3R 15892651 15892689 chr3R 15892732 15892736 16 79 2.5 0.5 1.5 6.4 85 chr3R 15892651 intron CG14877 - chr3R 15892694 intron CG14877 - chr3R 15892736 intron CG14877 - chr3R_16_15890001 chr3R_15890001 RAL-783 1205 chr3R 16189412 16189438 chr3R 16189814 16189841 invader4 6 402 2.0 1.0 1.5 2.4 429 chr3R 16189412 intron sra + chr3R 16189626 intron sra + chr3R 16189841 intron sra + chr3R_6_16185001 chr3R_16185001 RAL-783 1206 chr3R 16225087 16225118 chr3R 16225172 16225203 6 85 1.0 2.0 1.5 2.4 116 chr3R 16225087 intergenic not near genes chr3R 16225145 intergenic not near genes chr3R 16225203 intergenic tara + chr3R_6_16225001 chr3R_16225001 RAL-783 1207 chr3R 16374295 16374327 chr3R 16374412 16374444 6 117 2.0 2.0 2.0 2.0 149 chr3R 16374295 intergenic ss - chr3R 16374370 intergenic ss - chr3R 16374444 3` UTR ss - chr3R_6_16370001 chr3R_16370001 RAL-783 1208 chr3R 16450236 16450262 chr3R 16450315 16450341 7 79 3.5 1.5 2.5 2.0 105 chr3R 16450236 intron Pak3 - chr3R 16450288 intron Pak3 - chr3R 16450341 intron Pak3 - chr3R_7_16450001 chr3R_16450001 RAL-783 1209 chr3R 16472582 16472606 chr3R 16472655 16472656 9 68 4.0 4.5 4.2 1.7 74 chr3R 16472582 intergenic Gyc-89Da + chr3R 16472619 5` UTR Gyc-89Da + chr3R 16472656 5` UTR Gyc-89Da + chr3R_9_16470001 chr3R_16470001 RAL-783 1210 chr3R 16725779 16725811 chr3R 16725860 16725892 8 81 0.5 3.5 2.0 2.7 113 chr3R 16725779 intron Ubx - chr3R 16725836 intron Ubx - chr3R 16725892 intron Ubx - chr3R_8_16725001 chr3R_16725001 RAL-783 1211 chr3R 16756319 16756353 chr3R 16762510 16762544 diver 14 6190 0.5 2.0 1.2 6.4 6225 chr3R 16756319 intron bxd - chr3R 16759432 intron bxd - chr3R 16762544 intron bxd - chr3R_14_16755001 chr3R_16755001 RAL-783 1212 chr3R 16796031 16796054 chr3R 16796564 16796590 7 535 2.0 2.0 2.0 2.3 559 chr3R 16796031 intergenic not near genes chr3R 16796310 intergenic not near genes chr3R 16796590 intergenic not near genes chr3R_7_16795001 chr3R_16795001 RAL-783 1213 chr3R 16860337 16860366 chr3R 16860415 16860444 5 78 0.5 0.5 0.5 3.3 107 chr3R 16860337 intron iab-8 - chr3R 16860390 intron iab-8 - chr3R 16860444 intron iab-8 - chr3R_5_16860001 chr3R_16860001 RAL-783 1214 chr3R 17121532 17121552 chr3R 17121727 17121746 6 195 3.5 3.0 3.2 1.4 214 chr3R 17121532 intron cher - chr3R 17121639 intron,exon cher -,CG42779 + chr3R 17121746 intron,exon cher -,CG42779 + chr3R_6_17120001 chr3R_17120001 RAL-783 1215 chr3R 17234086 17234117 chr3R 17234167 17234198 13 81 5.0 2.0 3.5 2.9 112 chr3R 17234086 intron beat-IIb - chr3R 17234142 intron beat-IIb - chr3R 17234198 intron beat-IIb - chr3R_13_17230001 chr3R_17230001 RAL-783 1216 chr3R 17345220 17345251 chr3R 17345311 17345342 9 91 1.5 2.5 2.0 3.0 122 chr3R 17345220 intron beat-IIa - chr3R 17345281 intron beat-IIa - chr3R 17345342 intron beat-IIa - chr3R_9_17345001 chr3R_17345001 RAL-783 1217 chr3R 17346691 17346715 chr3R 17348253 17348277 F-element 4 1562 1.0 3.0 2.0 1.3 1586 chr3R 17346691 intron beat-IIa - chr3R 17347484 intron beat-IIa - chr3R 17348277 intron beat-IIa - chr3R_4_17345001 chr3R_17345001 RAL-783 1218 chr3R 17355490 17355521 chr3R 17355568 17355599 5 78 4.0 1.5 2.8 1.3 109 chr3R 17355490 intron beat-IIa - chr3R 17355544 intron beat-IIa - chr3R 17355599 intron beat-IIa - chr3R_5_17355001 chr3R_17355001 RAL-783 1219 chr3R 17461203 17461230 chr3R 17461285 17461312 9 82 2.0 0.5 1.2 4.1 109 chr3R 17461203 intergenic not near genes chr3R 17461258 intergenic not near genes chr3R 17461312 intergenic not near genes chr3R_9_17460001 chr3R_17460001 RAL-783 1220 chr3R 17517677 17517704 chr3R 17517754 17517782 12 77 2.5 2.5 2.5 3.4 105 chr3R 17517677 intergenic not near genes chr3R 17517730 intergenic CR44349 - chr3R 17517782 intergenic CR44349 - chr3R_12_17515001 chr3R_17515001 RAL-783 1221 chr3R 17521583 17521587 chr3R 17521720 17521747 6 151 2.0 3.5 2.8 1.6 164 chr3R 17521583 intergenic not near genes chr3R 17521665 intergenic not near genes chr3R 17521747 intergenic not near genes chr3R_6_17520001 chr3R_17520001 RAL-783 1222 chr3R 17592432 17592452 chr3R 17592517 17592541 9 87 1.5 2.0 1.8 3.2 109 chr3R 17592432 intergenic not near genes chr3R 17592486 intergenic not near genes chr3R 17592541 intergenic not near genes chr3R_9_17590001 chr3R_17590001 RAL-783 1223 chr3R 17638323 17638349 chr3R 17638808 17638835 roo 5 486 1.5 1.5 1.5 2.0 512 chr3R 17638323 intron CG43175 + chr3R 17638579 intron CG43175 + chr3R 17638835 intron,intron CG43175 +,CR45222 + chr3R_5_17635001 chr3R_17635001 RAL-783 1224 chr3R 17714680 17714695 chr3R 17714760 17714775 4 79 5.5 6.5 6.0 0.6 95 chr3R 17714680 intron osa - chr3R 17714728 intron osa - chr3R 17714775 intron osa - chr3R_4_17710001 chr3R_17710001 RAL-783 1225 chr3R 17758818 17758843 chr3R 17758922 17758947 4 102 0.5 3.5 2.0 1.3 129 chr3R 17758818 intron TyrR - chr3R 17758882 intron TyrR - chr3R 17758947 intron TyrR - chr3R_4_17755001 chr3R_17755001 RAL-783 1226 chr3R 17823163 17823176 chr3R 17823313 17823326 4 150 1.5 1.0 1.2 1.8 163 chr3R 17823163 intron tinc + chr3R 17823244 intron tinc + chr3R 17823326 intron tinc + chr3R_4_17820001 chr3R_17820001 RAL-783 1227 chr3R 17861348 17861366 chr3R 17861424 17861442 5 76 1.0 1.0 1.0 2.5 94 chr3R 17861348 intron tinc + chr3R 17861395 intron tinc + chr3R 17861442 intron tinc + chr3R_5_17860001 chr3R_17860001 RAL-783 1228 chr3R 17925853 17925889 chr3R 17927317 17927351 hobo 10 1462 2.0 5.5 3.8 2.1 1498 chr3R 17925853 intron cpo + chr3R 17926602 intron cpo + chr3R 17927351 intron cpo + chr3R_10_17925001 chr3R_17925001 RAL-783 1229 chr3R 18061581 18061608 chr3R 18063149 18063176 F-element 5 1568 3.0 2.0 2.5 1.4 1595 chr3R 18061581 intergenic not near genes chr3R 18062378 intergenic not near genes chr3R 18063176 intergenic not near genes chr3R_5_18060001 chr3R_18060001 RAL-783 1230 chr3R 18342022 18342044 chr3R 18342100 18342122 5 78 1.5 1.0 1.2 2.3 100 chr3R 18342022 intron CG15803 - chr3R 18342072 intron CG15803 - chr3R 18342122 intron CG15803 - chr3R_5_18340001 chr3R_18340001 RAL-783 1231 chr3R 18501600 18501626 chr3R 18501681 18501707 7 81 2.0 3.5 2.8 1.8 107 chr3R 18501600 intron fru - chr3R 18501654 intron fru - chr3R 18501707 intron fru - chr3R_7_18500001 chr3R_18500001 RAL-783 1232 chr3R 18528366 18528392 chr3R 18528453 18528479 5 86 2.0 0.5 1.2 2.3 113 chr3R 18528366 intron fru - chr3R 18528422 intron fru - chr3R 18528479 intron fru - chr3R_5_18525001 chr3R_18525001 RAL-783 1233 chr3R 18606508 18606528 chr3R 18610740 18610760 F-element 4 4232 3.0 2.0 2.5 1.1 4252 chr3R 18606508 intron,intron qin +,CG14304 - chr3R 18608634 intron,intron qin +,CG14304 - chr3R 18610760 intron,intron qin +,CG14304 - chr3R_4_18605001 chr3R_18605001 RAL-783 1234 chr3R 18781694 18781726 chr3R 18781770 18781788 7 70 2.0 2.5 2.2 2.2 94 chr3R 18781694 intron CG7720 - chr3R 18781741 intron CG7720 - chr3R 18781788 intron CG7720 - chr3R_7_18780001 chr3R_18780001 RAL-783 1235 chr3R 18812077 18812102 chr3R 18812155 18812180 9 78 2.5 4.0 3.2 2.1 103 chr3R 18812077 intron CG18208 - chr3R 18812128 intron CG18208 - chr3R 18812180 intron CG18208 - chr3R_9_18810001 chr3R_18810001 RAL-783 1236 chr3R 18817512 18817529 chr3R 18817610 18817627 5 98 1.0 0.0 0.5 3.3 115 chr3R 18817512 intron CG18208 - chr3R 18817570 intron CG18208 - chr3R 18817627 intron CG18208 - chr3R_5_18815001 chr3R_18815001 RAL-783 1237 chr3R 18839813 18839836 chr3R 18839896 18839919 7 83 2.0 3.0 2.5 2.0 106 chr3R 18839813 intron CG18208 - chr3R 18839866 intron CG18208 - chr3R 18839919 intron CG18208 - chr3R_7_18835001 chr3R_18835001 RAL-783 1238 chr3R 18967135 18967161 chr3R 18967343 18967353 7 194 24.0 16.0 20.0 0.3 218 chr3R 18967135 intron,intron CG42613 +,CG43732 + chr3R 18967244 intron,intron CG42613 +,CG43732 + chr3R 18967353 intron,intron CG42613 +,CG43732 + chr3R_7_18965001 chr3R_18965001 RAL-783 1239 chr3R 19117062 19117073 chr3R 19117206 19117217 7 144 3.5 0.0 1.8 2.5 155 chr3R 19117062 intron CG6040 + chr3R 19117140 intron CG6040 + chr3R 19117217 intron CG6040 + chr3R_7_19115001 chr3R_19115001 RAL-783 1240 chr3R 19248877 19248899 chr3R 19248956 19248979 6 80 4.0 0.0 2.0 2.0 102 chr3R 19248877 intergenic not near genes chr3R 19248928 intergenic not near genes chr3R 19248979 intergenic not near genes chr3R_6_19245001 chr3R_19245001 RAL-783 1241 chr3R 19320582 19320616 chr3R 19320670 19320704 14 88 2.0 2.5 2.2 4.4 122 chr3R 19320582 intron Dl - chr3R 19320643 intron Dl - chr3R 19320704 intron Dl - chr3R_14_19320001 chr3R_19320001 RAL-783 1242 chr3R 19561834 19561856 chr3R 19561911 19561932 10 75 1.5 4.0 2.8 2.6 98 chr3R 19561834 intron Dys + chr3R 19561883 intron Dys + chr3R 19561932 intron Dys + chr3R_10_19560001 chr3R_19560001 RAL-783 1243 chr3R 19602569 19602602 chr3R 19602649 19602682 4 80 1.0 0.0 0.5 2.7 113 chr3R 19602569 exon CG7333 + chr3R 19602626 3` UTR CG7333 + chr3R 19602682 intergenic CG7333 + chr3R_4_19600001 chr3R_19600001 RAL-783 1244 chr3R 19650520 19650539 chr3R 19650601 19650620 5 82 1.0 1.5 1.2 2.3 100 chr3R 19650520 exon CG31220 + chr3R 19650570 3` UTR CG31220 + chr3R 19650620 intergenic CG31220 +,CG31219 + chr3R_5_19650001 chr3R_19650001 RAL-783 1245 chr3R 19750045 19750059 chr3R 19750125 19750138 5 79 2.5 1.0 1.8 1.8 93 chr3R 19750045 intron GluClalpha + chr3R 19750092 intron GluClalpha + chr3R 19750138 intron GluClalpha + chr3R_5_19750001 chr3R_19750001 RAL-783 1246 chr3R 19783192 19783208 chr3R 19783280 19783296 5 88 0.5 3.0 1.8 1.8 104 chr3R 19783192 intergenic CG11407 +,CG11453 + chr3R 19783244 intergenic CG11407 +,CG11453 + chr3R 19783296 intergenic CG11407 +,CG11453 + chr3R_5_19780001 chr3R_19780001 RAL-783 1247 chr3R 19953948 19953982 chr3R 19954025 19954057 11 76 4.0 4.5 4.2 2.1 109 chr3R 19953948 intron Hs6st - chr3R 19954002 intron Hs6st - chr3R 19954057 intron Hs6st - chr3R_11_19950001 chr3R_19950001 RAL-783 1248 chr3R 19957270 19957299 chr3R 19957345 19957375 8 71 1.0 3.5 2.2 2.5 105 chr3R 19957270 intron Hs6st - chr3R 19957322 intron Hs6st - chr3R 19957375 intron Hs6st - chr3R_8_19955001 chr3R_19955001 RAL-783 1249 chr3R 20109547 20109569 chr3R 20114751 20114775 copia 4 5205 0.5 3.5 2.0 1.3 5228 chr3R 20109547 intergenic not near genes chr3R 20112161 intergenic not near genes chr3R 20114775 intergenic CG10887 + chr3R_4_20110001 chr3R_20110001 RAL-783 1250 chr3R 20201354 20201384 chr3R 20201439 20201468 10 85 3.5 2.5 3.0 2.5 114 chr3R 20201354 intergenic not near genes chr3R 20201411 intergenic not near genes chr3R 20201468 intergenic not near genes chr3R_10_20200001 chr3R_20200001 RAL-783 1251 chr3R 20242577 20242608 chr3R 20242679 20242711 6 103 2.5 1.0 1.8 2.1 134 chr3R 20242577 intron Nlg4 + chr3R 20242644 intron Nlg4 + chr3R 20242711 intron Nlg4 + chr3R_6_20240001 chr3R_20240001 RAL-783 1252 chr3R 20266521 20266544 chr3R 20272987 20273015 Burdock 9 6470 0.0 3.0 1.5 3.6 6494 chr3R 20266521 intron cic + chr3R 20269768 intron cic + chr3R 20273015 intron cic + chr3R_9_20265001 chr3R_20265001 RAL-783 1253 chr3R 20331004 20331030 chr3R 20331490 20331515 roo 6 486 0.5 2.0 1.2 2.7 511 chr3R 20331004 intergenic Sirt2 + chr3R 20331260 intergenic Sirt2 + chr3R 20331515 intergenic not near genes chr3R_6_20330001 chr3R_20330001 RAL-783 1254 chr3R 20506589 20506616 chr3R 20507391 20507419 BS 7 803 2.5 1.5 2.0 2.3 830 chr3R 20506589 intergenic Or92a + chr3R 20507004 intergenic CG4288 - chr3R 20507419 3` UTR CG4288 - chr3R_7_20505001 chr3R_20505001 RAL-783 1255 chr3R 20703480 20703513 chr3R 20703874 20703907 8 394 0.0 2.0 1.0 4.0 427 chr3R 20703480 intron Oamb - chr3R 20703694 intron Oamb - chr3R 20703907 intron Oamb - chr3R_8_20700001 chr3R_20700001 RAL-783 1256 chr3R 20708755 20708759 chr3R 20708840 20708844 4 85 3.5 1.5 2.5 1.1 89 chr3R 20708755 intron Oamb - chr3R 20708800 intron Oamb - chr3R 20708844 intron Oamb - chr3R_4_20705001 chr3R_20705001 RAL-783 1257 chr3R 20733772 20733798 chr3R 20733855 20733890 12 90 5.0 4.5 4.8 2.1 118 chr3R 20733772 intergenic not near genes chr3R 20733831 intergenic not near genes chr3R 20733890 intergenic not near genes chr3R_12_20730001 chr3R_20730001 RAL-783 1258 chr3R 20735006 20735046 chr3R 20735091 20735107 5 80 1.0 2.5 1.8 1.8 101 chr3R 20735006 intergenic not near genes chr3R 20735056 intergenic not near genes chr3R 20735107 intergenic not near genes chr3R_5_20735001 chr3R_20735001 RAL-783 1259 chr3R 20854498 20854517 chr3R 20859271 20859307 Doc 5 4786 6.5 1.0 3.8 1.0 4809 chr3R 20854498 intron Ir93a - chr3R 20856902 intron Ir93a - chr3R 20859307 exon Ir93a - chr3R_5_20855001 chr3R_20855001 RAL-783 1260 chr3R 20871381 20871385 chr3R 20874859 20874862 4 3477 17.0 10.5 13.8 0.3 3481 chr3R 20871381 exon TotA + chr3R 20873122 exon TotC + chr3R 20874862 intergenic TotB + chr3R_4_20870001 chr3R_20870001 RAL-783 1261 chr3R 20901660 20901678 chr3R 20901762 20901779 4 102 2.5 2.5 2.5 1.1 119 chr3R 20901660 intergenic CG5621 + chr3R 20901720 intergenic CG5621 + chr3R 20901779 intergenic CG5621 + chr3R_4_20900001 chr3R_20900001 RAL-783 1262 chr3R 20938910 20938938 chr3R 20938997 20939025 6 87 3.0 5.5 4.2 1.2 115 chr3R 20938910 intron CG31191 - chr3R 20938968 intron CG31191 - chr3R 20939025 intron CG31191 - chr3R_6_20935001 chr3R_20935001 RAL-783 1263 chr3R 20942812 20942836 chr3R 20942888 20942912 6 75 1.5 3.0 2.2 1.9 100 chr3R 20942812 intron CG31191 - chr3R 20942862 intron CG31191 - chr3R 20942912 intron CG31191 - chr3R_6_20940001 chr3R_20940001 RAL-783 1264 chr3R 20994963 20994975 chr3R 20995048 20995060 4 86 1.0 3.0 2.0 1.3 97 chr3R 20994963 intron Calx + chr3R 20995012 intron Calx + chr3R 20995060 intron Calx + chr3R_4_20995001 chr3R_20995001 RAL-783 1265 chr3R 20994979 20994984 chr3R 20995037 20995040 6 69 1.0 2.0 1.5 2.4 61 chr3R 20994979 intron Calx + chr3R 20995010 intron Calx + chr3R 20995040 intron Calx + chr3R_6_20995001 chr3R_20995001 RAL-783 1266 chr3R 21007610 21007641 chr3R 21007690 21007718 5 78 3.0 4.0 3.5 1.1 108 chr3R 21007610 intron Calx + chr3R 21007664 intron Calx + chr3R 21007718 intron Calx + chr3R_5_21005001 chr3R_21005001 RAL-783 1267 chr3R 21014015 21014035 chr3R 21014093 21014113 5 78 2.0 3.0 2.5 1.4 98 chr3R 21014015 3` UTR Calx + chr3R 21014064 3` UTR Calx + chr3R 21014113 3` UTR Calx + chr3R_5_21010001 chr3R_21010001 RAL-783 1268 chr3R 21141676 21141707 chr3R 21150155 21150186 Tirant 11 8474 2.5 5.0 3.8 2.3 8510 chr3R 21141676 intron SNF4Agamma + chr3R 21145931 intron SNF4Agamma + chr3R 21150186 intron SNF4Agamma + chr3R_11_21145001 chr3R_21145001 RAL-783 1269 chr3R 21154548 21154577 chr3R 21154753 21154792 4 208 2.5 0.0 1.2 1.8 244 chr3R 21154548 intron SNF4Agamma + chr3R 21154670 intron SNF4Agamma + chr3R 21154792 intron SNF4Agamma + chr3R_4_21150001 chr3R_21150001 RAL-783 1270 chr3R 21214716 21214725 chr3R 21214797 21214806 5 81 1.5 0.0 0.8 2.8 90 chr3R 21214716 intergenic CG5862 + chr3R 21214761 intergenic CG5862 + chr3R 21214806 intergenic CG5862 + chr3R_5_21210001 chr3R_21210001 RAL-783 1271 chr3R 21321508 21321527 chr3R 21321604 21321623 4 96 1.5 0.5 1.0 2.0 115 chr3R 21321508 intron CG16791 - chr3R 21321566 intron CG16791 - chr3R 21321623 intron CG16791 - chr3R_4_21320001 chr3R_21320001 RAL-783 1272 chr3R 21330878 21330900 chr3R 21330966 21330989 5 90 2.0 0.0 1.0 2.5 111 chr3R 21330878 intron CG16791 - chr3R 21330934 intron CG16791 - chr3R 21330989 intron CG16791 - chr3R_5_21330001 chr3R_21330001 RAL-783 1273 chr3R 21472016 21472030 chr3R 21472097 21472111 6 81 1.5 2.5 2.0 2.0 95 chr3R 21472016 intergenic not near genes chr3R 21472064 intergenic not near genes chr3R 21472111 intergenic not near genes chr3R_6_21470001 chr3R_21470001 RAL-783 1274 chr3R 21502936 21502953 chr3R 21503108 21503123 4 171 3.5 3.0 3.2 1.0 187 chr3R 21502936 intron C15 + chr3R 21503030 intron C15 + chr3R 21503123 intron C15 + chr3R_4_21500001 chr3R_21500001 RAL-783 1275 chr3R 21519986 21520128 chr3R 21520086 21520222 8 98 1.0 1.0 1.0 4.0 236 chr3R 21519986 intergenic not near genes chr3R 21520104 intergenic not near genes chr3R 21520222 intergenic not near genes chr3R_8_21520001 chr3R_21520001 RAL-783 1276 chr3R 21554833 21554843 chr3R 21554927 21554937 6 94 1.0 0.5 0.8 3.3 104 chr3R 21554833 intron slou - chr3R 21554885 intron slou - chr3R 21554937 intron slou - chr3R_6_21550001 chr3R_21550001 RAL-783 1277 chr3R 21758684 21758705 chr3R 21758764 21758779 9 80 5.5 3.0 4.2 1.7 95 chr3R 21758684 intergenic CG42335 + chr3R 21758732 intergenic CG42335 + chr3R 21758779 exon CG42335 + chr3R_9_21755001 chr3R_21755001 RAL-783 1278 chr3R 21761120 21761150 chr3R 21768512 21768522 mdg1 5 7387 4.5 2.0 3.2 1.2 7402 chr3R 21761120 exon CG42335 + chr3R 21764821 intron CG42335 + chr3R 21768522 exon CG42335 + chr3R_5_21760001 chr3R_21760001 RAL-783 1279 chr3R 21849080 21849104 chr3R 21849286 21849311 7 206 1.0 3.5 2.2 2.2 231 chr3R 21849080 intergenic not near genes chr3R 21849196 intergenic not near genes chr3R 21849311 intergenic not near genes chr3R_7_21845001 chr3R_21845001 RAL-783 1280 chr3R 8339246 8339247 chr3R 21907534 21907534 6 13568288 13.0 19.5 16.2 0.3 13568288 chr3R 8339246 intergenic not near genes chr3R 15123390 intron CG42788 - chr3R 21907534 intergenic CG6678 + chr3R_6_15120001 chr3R_15120001 RAL-783 1281 chr3R 17389054 17389054 chr3R 21907534 21907534 4 4518480 6.0 19.5 12.8 0.3 4518480 chr3R 17389054 intron,3` UTR Brf -,lute + chr3R 19648294 5` UTR CG6195 - chr3R 21907534 intergenic CG6678 + chr3R_4_19645001 chr3R_19645001 RAL-783 1282 chr3R 21907534 21907534 chr3R 28831801 28831802 9 6924268 17.5 14.5 16.0 0.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_9_25365001 chr3R_25365001 RAL-783 1283 chr3R 21907535 21907535 chr3R 28831801 28831802 13 6924267 17.5 14.5 16.0 0.8 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_13_25365001 chr3R_25365001 RAL-783 1284 chr3R 21907536 21907536 chr3R 28831801 28831802 17 6924266 17.5 14.5 16.0 1.0 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_17_25365001 chr3R_25365001 RAL-783 1285 chr3R 21983136 21983170 chr3R 21983216 21983250 8 79 2.5 1.5 2.0 2.7 114 chr3R 21983136 intron Eip93F + chr3R 21983193 intron Eip93F + chr3R 21983250 intron Eip93F + chr3R_8_21980001 chr3R_21980001 RAL-783 1286 chr3R 22370408 22370439 chr3R 22370497 22370527 7 88 1.0 1.0 1.0 3.5 119 chr3R 22370408 intron PyK + chr3R 22370468 intron PyK + chr3R 22370527 intron PyK + chr3R_7_22370001 chr3R_22370001 RAL-783 1287 chr3R 22428579 22428601 chr3R 22428655 22428676 9 76 3.0 3.0 3.0 2.2 97 chr3R 22428579 intron CG13847 - chr3R 22428628 intron CG13847 - chr3R 22428676 intron CG13847 - chr3R_9_22425001 chr3R_22425001 RAL-783 1288 chr3R 22450541 22450578 chr3R 22453181 22453218 NOF 19 2639 1.0 3.5 2.2 5.9 2677 chr3R 22450541 intron CG34376 + chr3R 22451880 intron CG34376 + chr3R 22453218 intron CG34376 + chr3R_19_22450001 chr3R_22450001 RAL-783 1289 chr3R 22507790 22507814 chr3R 22507874 22507897 4 84 1.5 4.0 2.8 1.1 107 chr3R 22507790 intron Octbeta1R + chr3R 22507844 intron Octbeta1R + chr3R 22507897 intron Octbeta1R + chr3R_4_22505001 chr3R_22505001 RAL-783 1290 chr3R 22538449 22538469 chr3R 22538534 22538554 4 85 2.0 3.5 2.8 1.1 105 chr3R 22538449 intron CG5326 - chr3R 22538502 intron CG5326 - chr3R 22538554 intron CG5326 - chr3R_4_22535001 chr3R_22535001 RAL-783 1291 chr3R 22640551 22640572 chr3R 22640626 22640648 5 75 0.5 3.0 1.8 1.8 97 chr3R 22640551 intron wake + chr3R 22640600 intron wake + chr3R 22640648 intron wake + chr3R_5_22640001 chr3R_22640001 RAL-783 1292 chr3R 22769089 22769123 chr3R 22769166 22769198 8 76 3.5 2.5 3.0 2.0 109 chr3R 22769089 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769144 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R 22769198 intron,intron,exon CG7029 +,Usp12-46 +,CG43092 - chr3R_8_22765001 chr3R_22765001 RAL-783 1293 chr3R 22797762 22797931 chr3R 22797848 22798027 15 90 0.0 0.0 0.0 15.0 265 chr3R 22797762 intergenic not near genes chr3R 22797894 intergenic not near genes chr3R 22798027 intergenic not near genes chr3R_15_22795001 chr3R_22795001 RAL-783 1294 chr3R 22860155 22860173 chr3R 22860246 22860265 4 92 1.5 1.5 1.5 1.6 110 chr3R 22860155 intergenic not near genes chr3R 22860210 intergenic not near genes chr3R 22860265 intergenic not near genes chr3R_4_22860001 chr3R_22860001 RAL-783 1295 chr3R 22863929 22863931 chr3R 22864003 22864008 4 77 1.5 3.5 2.5 1.1 79 chr3R 22863929 intergenic not near genes chr3R 22863968 intergenic not near genes chr3R 22864008 intergenic not near genes chr3R_4_22860001 chr3R_22860001 RAL-783 1296 chr3R 22993504 22993536 chr3R 22993639 22993670 7 132 3.0 3.0 3.0 1.8 166 chr3R 22993504 intron Nha2 - chr3R 22993587 intron Nha2 - chr3R 22993670 intron Nha2 - chr3R_7_22990001 chr3R_22990001 RAL-783 1297 chr3R 23100154 23100427 chr3R 23100241 23100508 10 85 6.0 3.0 4.5 1.8 354 chr3R 23100154 intron,exon CG13830 -,CG6738 + chr3R 23100331 intron,exon CG13830 -,CG6738 + chr3R 23100508 intron,exon CG13830 -,CG6738 + chr3R_10_23100001 chr3R_23100001 RAL-783 1298 chr3R 23335432 23335464 chr3R 23335510 23335541 5 78 1.5 2.5 2.0 1.7 109 chr3R 23335432 intron pnt - chr3R 23335486 intron pnt - chr3R 23335541 intron pnt - chr3R_5_23335001 chr3R_23335001 RAL-783 1299 chr3R 23360180 23360199 chr3R 23360256 23360275 5 76 0.0 3.0 1.5 2.0 95 chr3R 23360180 3` UTR RpS3 + chr3R 23360228 intergenic RpS3 + chr3R 23360275 intergenic RpS3 + chr3R_5_23360001 chr3R_23360001 RAL-783 1300 chr3R 23421977 23422008 chr3R 23422059 23422085 7 83 3.0 0.5 1.8 2.5 108 chr3R 23421977 intron CG4374 - chr3R 23422031 intron CG4374 - chr3R 23422085 intron CG4374 - chr3R_7_23420001 chr3R_23420001 RAL-783 1301 chr3R 23459431 23459459 chr3R 23459607 23459633 6 175 0.0 1.5 0.8 3.3 202 chr3R 23459431 intron CG4374 - chr3R 23459532 intron CG4374 - chr3R 23459633 intron CG4374 - chr3R_6_23455001 chr3R_23455001 RAL-783 1302 chr3R 23536957 23536981 chr3R 23537139 23537162 5 182 1.0 3.5 2.2 1.6 205 chr3R 23536957 intergenic CG10168 -,CG16732 - chr3R 23537060 exon CG10168 - chr3R 23537162 exon CG10168 - chr3R_5_23535001 chr3R_23535001 RAL-783 1303 chr3R 23548074 23548102 chr3R 23548372 23548406 8 303 2.5 3.0 2.8 2.1 332 chr3R 23548074 intergenic not near genes chr3R 23548240 intergenic not near genes chr3R 23548406 intergenic not near genes chr3R_8_23545001 chr3R_23545001 RAL-783 1304 chr3R 23558408 23558427 chr3R 23560189 23560208 Bari1 8 1781 3.5 2.5 3.0 2.0 1800 chr3R 23558408 intron beat-IV + chr3R 23559308 intron beat-IV + chr3R 23560208 intron beat-IV + chr3R_8_23555001 chr3R_23555001 RAL-783 1305 chr3R 23572756 23572773 chr3R 23572876 23572893 5 118 4.5 3.5 4.0 1.0 137 chr3R 23572756 intron beat-IV + chr3R 23572824 intron beat-IV + chr3R 23572893 intron beat-IV + chr3R_5_23570001 chr3R_23570001 RAL-783 1306 chr3R 23629441 23629472 chr3R 23629517 23629548 11 75 3.5 1.5 2.5 3.1 107 chr3R 23629441 intron CG31145 - chr3R 23629494 intron CG31145 - chr3R 23629548 intron CG31145 - chr3R_11_23625001 chr3R_23625001 RAL-783 1307 chr3R 23650259 23650278 chr3R 23650383 23650402 5 123 2.5 0.0 1.2 2.3 143 chr3R 23650259 intron CG31145 - chr3R 23650330 intron CG31145 - chr3R 23650402 intron CG31145 - chr3R_5_23650001 chr3R_23650001 RAL-783 1308 chr3R 23684706 23684727 chr3R 23685191 23685213 roo 4 481 2.0 9.0 5.5 0.6 507 chr3R 23684706 intron CG18754 + chr3R 23684960 intron CG18754 + chr3R 23685213 exon CG18754 + chr3R_4_23680001 chr3R_23680001 RAL-783 1309 chr3R 23835406 23835437 chr3R 23844556 23844570 roo 4 9146 2.0 0.0 1.0 2.0 9164 chr3R 23835406 intron CG34355 + chr3R 23839988 intron CG34355 + chr3R 23844570 intron CG34355 + chr3R_4_23835001 chr3R_23835001 RAL-783 1310 chr3R 24007336 24007366 chr3R 24007458 24007492 4 126 1.5 0.0 0.8 2.2 156 chr3R 24007336 intron KrT95D - chr3R 24007414 intron KrT95D - chr3R 24007492 intron KrT95D - chr3R_4_24005001 chr3R_24005001 RAL-783 1311 chr3R 24011668 24011674 chr3R 24011751 24011757 4 83 0.0 3.5 1.8 1.4 89 chr3R 24011668 intron KrT95D - chr3R 24011712 intron KrT95D - chr3R 24011757 intron KrT95D - chr3R_4_24010001 chr3R_24010001 RAL-783 1312 chr3R 24021637 24021648 chr3R 24021727 24021733 4 89 1.5 1.5 1.5 1.6 96 chr3R 24021637 intron KrT95D - chr3R 24021685 intron KrT95D - chr3R 24021733 intron KrT95D - chr3R_4_24020001 chr3R_24020001 RAL-783 1313 chr3R 24072093 24072108 chr3R 24072531 24072546 jockey 6 437 9.0 5.0 7.0 0.8 453 chr3R 24072093 intron 4EHP - chr3R 24072320 intron 4EHP - chr3R 24072546 intron 4EHP - chr3R_6_24070001 chr3R_24070001 RAL-783 1314 chr3R 24074566 24074571 chr3R 24074642 24074647 4 76 3.5 0.0 1.8 1.4 81 chr3R 24074566 intron 4EHP - chr3R 24074606 intron 4EHP - chr3R 24074647 intron 4EHP - chr3R_4_24070001 chr3R_24070001 RAL-783 1315 chr3R 24076917 24076945 chr3R 24078383 24078412 hobo 8 1467 3.0 2.0 2.5 2.3 1495 chr3R 24076917 intron 4EHP - chr3R 24077664 intron 4EHP - chr3R 24078412 intron 4EHP - chr3R_8_24075001 chr3R_24075001 RAL-783 1316 chr3R 24199741 24199772 chr3R 24199821 24199852 6 80 2.5 3.0 2.8 1.6 111 chr3R 24199741 intron twin - chr3R 24199796 intron twin - chr3R 24199852 intron twin - chr3R_6_24195001 chr3R_24195001 RAL-783 1317 chr3R 24236472 24236497 chr3R 24236549 24236574 6 77 2.5 4.0 3.2 1.4 102 chr3R 24236472 exon mask + chr3R 24236523 intron mask + chr3R 24236574 intron mask + chr3R_6_24235001 chr3R_24235001 RAL-783 1318 chr3R 24434249 24434270 chr3R 24434327 24434348 6 77 3.0 2.5 2.8 1.6 99 chr3R 24434249 intron nAChRalpha1 - chr3R 24434298 intron nAChRalpha1 - chr3R 24434348 intron nAChRalpha1 - chr3R_6_24430001 chr3R_24430001 RAL-783 1319 chr3R 24670167 24670190 chr3R 24670251 24670274 4 84 1.0 1.5 1.2 1.8 107 chr3R 24670167 intron slo + chr3R 24670220 intron slo + chr3R 24670274 intron slo + chr3R_4_24670001 chr3R_24670001 RAL-783 1320 chr3R 24730088 24730118 chr3R 24732466 24732474 Doc 6 2374 1.0 0.0 0.5 4.0 2386 chr3R 24730088 intron tok + chr3R 24731281 intron tok + chr3R 24732474 intron tok + chr3R_6_24730001 chr3R_24730001 RAL-783 1321 chr3R 24858938 24858973 chr3R 24859018 24859042 16 78 2.5 2.5 2.5 4.6 104 chr3R 24858938 intron ppk22 - chr3R 24858990 exon ppk22 - chr3R 24859042 exon ppk22 - chr3R_16_24855001 chr3R_24855001 RAL-783 1322 chr3R 24890688 24890694 chr3R 24890771 24890793 4 92 4.0 2.5 3.2 1.0 105 chr3R 24890688 intron CG31121 - chr3R 24890740 intron CG31121 - chr3R 24890793 intron CG31121 - chr3R_4_24890001 chr3R_24890001 RAL-783 1323 chr3R 24912494 24912510 chr3R 24912576 24912592 4 82 2.0 2.5 2.2 1.2 98 chr3R 24912494 intergenic CR44267 + chr3R 24912543 intergenic CR44267 + chr3R 24912592 intergenic CR44267 + chr3R_4_24910001 chr3R_24910001 RAL-783 1324 chr3R 25008207 25008220 chr3R 25008285 25008298 5 78 4.0 5.5 4.8 0.9 91 chr3R 25008207 intron tnc + chr3R 25008252 intron tnc + chr3R 25008298 intron tnc + chr3R_5_25005001 chr3R_25005001 RAL-783 1325 chr3R 25025886 25025919 chr3R 25029238 25029275 8 3356 14.0 17.5 15.8 0.5 3389 chr3R 25025886 exon Hr96 + chr3R 25027580 intron Hr96 + chr3R 25029275 3` UTR Hr96 + chr3R_8_25025001 chr3R_25025001 RAL-783 1326 chr3R 25145442 25145464 chr3R 25145572 25145595 4 131 2.5 1.5 2.0 1.3 153 chr3R 25145442 intergenic not near genes chr3R 25145518 intergenic not near genes chr3R 25145595 intergenic not near genes chr3R_4_25145001 chr3R_25145001 RAL-783 1327 chr3R 25436491 25436519 chr3R 25436585 25436609 5 92 0.5 2.5 1.5 2.0 118 chr3R 25436491 intron Fur1 - chr3R 25436550 intron Fur1 - chr3R 25436609 intron Fur1 - chr3R_5_25435001 chr3R_25435001 RAL-783 1328 chr3R 25439406 25439428 chr3R 25439490 25439510 13 82 2.0 4.0 3.0 3.2 104 chr3R 25439406 intron Fur1 - chr3R 25439458 intron Fur1 - chr3R 25439510 intron Fur1 - chr3R_13_25435001 chr3R_25435001 RAL-783 1329 chr3R 25466729 25466742 chr3R 25467033 25467046 6 304 2.0 4.0 3.0 1.5 317 chr3R 25466729 intron Fur1 - chr3R 25466888 intron Fur1 - chr3R 25467046 intron Fur1 - chr3R_6_25465001 chr3R_25465001 RAL-783 1330 chr3R 25612909 25612940 chr3R 25612986 25613004 11 75 4.5 2.5 3.5 2.4 95 chr3R 25612909 intron Npl4 - chr3R 25612956 intron Npl4 - chr3R 25613004 intron Npl4 - chr3R_11_25610001 chr3R_25610001 RAL-783 1331 chr3R 25689125 25689164 chr3R 25689233 25689270 11 107 2.5 3.0 2.8 2.9 145 chr3R 25689125 intergenic not near genes chr3R 25689198 intergenic not near genes chr3R 25689270 intergenic not near genes chr3R_11_25685001 chr3R_25685001 RAL-783 1332 chr3R 25762938 25762971 chr3R 25763027 25763060 8 89 2.0 2.0 2.0 2.7 122 chr3R 25762938 5` UTR LpR1 - chr3R 25762999 5` UTR LpR1 - chr3R 25763060 5` UTR LpR1 - chr3R_8_25760001 chr3R_25760001 RAL-783 1333 chr3R 25801268 25801292 chr3R 25802250 25802276 8 983 1.0 3.0 2.0 2.7 1008 chr3R 25801268 intergenic not near genes chr3R 25801772 intergenic not near genes chr3R 25802276 intergenic not near genes chr3R_8_25800001 chr3R_25800001 RAL-783 1334 chr3R 25832694 25832721 chr3R 25841876 25841903 roo 11 9180 3.0 3.5 3.2 2.6 9209 chr3R 25832694 exon alpha4GT2 + chr3R 25837298 intron alpha4GT2 + chr3R 25841903 exon alpha4GT2 + chr3R_11_25835001 chr3R_25835001 RAL-783 1335 chr3R 26075432 26075444 chr3R 26075516 26075529 7 85 3.5 1.0 2.2 2.2 97 chr3R 26075432 intergenic not near genes chr3R 26075480 intergenic not near genes chr3R 26075529 intergenic not near genes chr3R_7_26075001 chr3R_26075001 RAL-783 1336 chr3R 26122462 26122480 chr3R 26122538 26122556 7 74 8.0 4.0 6.0 1.0 94 chr3R 26122462 intron CG31324 + chr3R 26122509 intron CG31324 + chr3R 26122556 intron CG31324 + chr3R_7_26120001 chr3R_26120001 RAL-783 1337 chr3R 26166178 26166209 chr3R 26166264 26166288 10 85 3.0 5.0 4.0 2.0 110 chr3R 26166178 intergenic not near genes chr3R 26166233 intergenic not near genes chr3R 26166288 intergenic not near genes chr3R_10_26165001 chr3R_26165001 RAL-783 1338 chr3R 26235488 26235514 chr3R 26235569 26235572 6 74 3.5 3.0 3.2 1.4 84 chr3R 26235488 5` UTR CR42745 + chr3R 26235530 5` UTR CR42745 + chr3R 26235572 5` UTR CR42745 + chr3R_6_26235001 chr3R_26235001 RAL-783 1339 chr3R 26265826 26265842 chr3R 26265913 26265930 4 86 3.0 6.5 4.8 0.7 104 chr3R 26265826 intron CG6154 + chr3R 26265878 intron CG6154 + chr3R 26265930 intron CG6154 + chr3R_4_26265001 chr3R_26265001 RAL-783 1340 chr3R 26292125 26292140 chr3R 26292205 26292220 7 80 0.0 4.5 2.2 2.2 95 chr3R 26292125 intergenic not near genes chr3R 26292172 intergenic not near genes chr3R 26292220 intergenic not near genes chr3R_7_26290001 chr3R_26290001 RAL-783 1341 chr3R 26294721 26294747 chr3R 26294799 26294825 11 78 2.0 5.0 3.5 2.4 104 chr3R 26294721 intergenic not near genes chr3R 26294773 intergenic not near genes chr3R 26294825 intergenic not near genes chr3R_11_26290001 chr3R_26290001 RAL-783 1342 chr3R 26376323 26376356 chr3R 26385483 26385506 roo 7 9158 3.5 0.0 1.8 2.5 9183 chr3R 26376323 intergenic not near genes chr3R 26380914 intergenic not near genes chr3R 26385506 intergenic not near genes chr3R_7_26380001 chr3R_26380001 RAL-783 1343 chr3R 26510522 26510533 chr3R 26519577 26519588 roo 5 9054 0.0 4.5 2.2 1.6 9066 chr3R 26510522 intron plum - chr3R 26515055 intron plum - chr3R 26519588 intron,5` UTR plum -,CR45226 + chr3R_5_26515001 chr3R_26515001 RAL-783 1344 chr3R 26542048 26542071 chr3R 26542139 26542162 8 91 3.5 0.0 1.8 2.9 114 chr3R 26542048 intron scrib + chr3R 26542105 intron scrib + chr3R 26542162 intron scrib + chr3R_8_26540001 chr3R_26540001 RAL-783 1345 chr3R 26558348 26558359 chr3R 26565657 26565670 Stalker4 6 7311 1.5 3.5 2.5 1.7 7322 chr3R 26558348 intron scrib + chr3R 26562009 intron scrib + chr3R 26565670 intron scrib + chr3R_6_26560001 chr3R_26560001 RAL-783 1346 chr3R 26607744 26607762 chr3R 26607820 26607838 5 75 5.5 2.0 3.8 1.0 94 chr3R 26607744 5` UTR CR44951 + chr3R 26607791 5` UTR CR44951 + chr3R 26607838 5` UTR CR44951 + chr3R_5_26605001 chr3R_26605001 RAL-783 1347 chr3R 26642732 26642759 chr3R 26643125 26643151 jockey 7 393 4.0 2.0 3.0 1.8 419 chr3R 26642732 intergenic not near genes chr3R 26642942 intergenic not near genes chr3R 26643151 intergenic not near genes chr3R_7_26640001 chr3R_26640001 RAL-783 1348 chr3R 26770244 26770274 chr3R 26770321 26770351 11 77 1.0 0.5 0.8 6.1 107 chr3R 26770244 intergenic CR45563 + chr3R 26770298 intergenic CR45563 + chr3R 26770351 intergenic not near genes chr3R_11_26770001 chr3R_26770001 RAL-783 1349 chr3R 26810555 26810586 chr3R 26811040 26811071 roo 7 485 2.0 6.0 4.0 1.4 516 chr3R 26810555 intron Tl + chr3R 26810813 intron Tl + chr3R 26811071 intron Tl + chr3R_7_26810001 chr3R_26810001 RAL-783 1350 chr3R 26845570 26845599 chr3R 26845650 26845678 8 79 5.0 3.5 4.2 1.5 108 chr3R 26845570 intron Lerp - chr3R 26845624 intron Lerp - chr3R 26845678 intron Lerp - chr3R_8_26845001 chr3R_26845001 RAL-783 1351 chr3R 26870423 26870449 chr3R 26870778 26870804 10 355 4.0 13.0 8.5 1.1 381 chr3R 26870423 intron BM-40-SPARC - chr3R 26870614 intron BM-40-SPARC - chr3R 26870804 intron BM-40-SPARC - chr3R_10_26870001 chr3R_26870001 RAL-783 1352 chr3R 26870530 26870553 chr3R 26870856 26870887 10 326 6.5 15.5 11.0 0.8 357 chr3R 26870530 intron BM-40-SPARC - chr3R 26870708 intron BM-40-SPARC - chr3R 26870887 intron BM-40-SPARC - chr3R_10_26870001 chr3R_26870001 RAL-783 1353 chr3R 26920377 26920383 chr3R 26920523 26920529 4 146 1.5 1.5 1.5 1.6 152 chr3R 26920377 intron sda + chr3R 26920453 intron sda + chr3R 26920529 intron sda + chr3R_4_26920001 chr3R_26920001 RAL-783 1354 chr3R 26960733 26960758 chr3R 26960822 26960847 6 87 2.5 2.5 2.5 1.7 114 chr3R 26960733 intergenic Tsp97E - chr3R 26960790 intergenic Tsp97E - chr3R 26960847 intergenic Tsp97E - chr3R_6_26960001 chr3R_26960001 RAL-783 1355 chr3R 27028722 27028756 chr3R 27028801 27028835 9 79 1.5 1.5 1.5 3.6 113 chr3R 27028722 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028835 intron RYa-R + chr3R_9_27025001 chr3R_27025001 RAL-783 1356 chr3R 27077099 27077128 chr3R 27077178 27077206 7 79 5.0 3.5 4.2 1.3 107 chr3R 27077099 intron CG14257 + chr3R 27077152 intron CG14257 + chr3R 27077206 intron CG14257 + chr3R_7_27075001 chr3R_27075001 RAL-783 1357 chr3R 27101243 27101256 chr3R 27101323 27101337 5 81 3.5 2.0 2.8 1.3 94 chr3R 27101243 intergenic CG17189 + chr3R 27101290 intergenic CG17189 + chr3R 27101337 intergenic CG17189 + chr3R_5_27100001 chr3R_27100001 RAL-783 1358 chr3R 27140516 27140547 chr3R 27148126 27148155 412 12 7609 2.0 4.5 3.2 2.9 7639 chr3R 27140516 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148155 intron CG6051 - chr3R_12_27140001 chr3R_27140001 RAL-783 1359 chr3R 27200159 27200190 chr3R 27200245 27200251 10 84 2.0 2.0 2.0 3.3 92 chr3R 27200159 intergenic not near genes chr3R 27200205 intergenic not near genes chr3R 27200251 intergenic not near genes chr3R_10_27200001 chr3R_27200001 RAL-783 1360 chr3R 27342792 27342819 chr3R 27351373 27351398 Tirant 5 8580 0.0 1.0 0.5 3.3 8606 chr3R 27342792 intron CG42534 + chr3R 27347095 intron CG42534 + chr3R 27351398 intron CG42534 + chr3R_5_27345001 chr3R_27345001 RAL-783 1361 chr3R 27354825 27354848 chr3R 27355211 27355238 7 388 3.0 1.5 2.2 2.2 413 chr3R 27354825 intron CG42534 + chr3R 27355032 intron CG42534 + chr3R 27355238 intron CG42534 + chr3R_7_27355001 chr3R_27355001 RAL-783 1362 chr3R 27619705 27619729 chr3R 27619820 27619844 8 113 2.0 4.0 3.0 2.0 139 chr3R 27619705 intron Tusp + chr3R 27619774 intron Tusp + chr3R 27619844 intron Tusp + chr3R_8_27615001 chr3R_27615001 RAL-783 1363 chr3R 27679937 27679972 chr3R 27680060 27680095 11 122 1.5 0.5 1.0 5.5 158 chr3R 27679937 exon CG12883 + chr3R 27680016 3` UTR CG12883 + chr3R 27680095 3` UTR CG12883 + chr3R_11_27680001 chr3R_27680001 RAL-783 1364 chr3R 27705358 27705377 chr3R 27705437 27705457 7 76 8.5 2.0 5.2 1.1 99 chr3R 27705358 exon CG12428 - chr3R 27705408 intron CG12428 - chr3R 27705457 intron CG12428 - chr3R_7_27705001 chr3R_27705001 RAL-783 1365 chr3R 27725564 27725588 chr3R 27731006 27731030 I-element 6 5442 0.5 2.0 1.2 2.7 5466 chr3R 27725564 intergenic not near genes chr3R 27728297 intergenic not near genes chr3R 27731030 intergenic not near genes chr3R_6_27725001 chr3R_27725001 RAL-783 1366 chr3R 27779276 27779286 chr3R 27779352 27779363 4 76 2.5 4.0 3.2 1.0 87 chr3R 27779276 exon CG34353 - chr3R 27779320 intron CG34353 - chr3R 27779363 intron CG34353 - chr3R_4_27775001 chr3R_27775001 RAL-783 1367 chr3R 27856761 27856783 chr3R 27858244 27858266 hopper2 10 1483 3.5 3.5 3.5 2.2 1505 chr3R 27856761 intron CG34353 - chr3R 27857514 intron CG34353 - chr3R 27858266 intron CG34353 - chr3R_10_27855001 chr3R_27855001 RAL-783 1368 chr3R 27862952 27862986 chr3R 27868257 27868285 Transpac 12 5304 2.0 1.5 1.8 4.3 5333 chr3R 27862952 intron CG34353 - chr3R 27865618 intron CG34353 - chr3R 27868285 intron CG34353 - chr3R_12_27865001 chr3R_27865001 RAL-783 1369 chr3R 27875699 27875728 chr3R 27882754 27882783 297 7 7055 4.5 2.0 3.2 1.7 7084 chr3R 27875699 intron CG34353 - chr3R 27879241 intron CG34353 - chr3R 27882783 intron CG34353 - chr3R_7_27875001 chr3R_27875001 RAL-783 1370 chr3R 28039978 28039998 chr3R 28040060 28040065 7 79 4.5 5.0 4.8 1.2 87 chr3R 28039978 intron CG34362 + chr3R 28040022 intron CG34362 + chr3R 28040065 intron CG34362 + chr3R_7_28040001 chr3R_28040001 RAL-783 1371 chr3R 28054451 28054475 chr3R 28054527 28054551 9 75 2.5 5.0 3.8 1.9 100 chr3R 28054451 intron CG34362 + chr3R 28054501 intron CG34362 + chr3R 28054551 intron CG34362 + chr3R_9_28050001 chr3R_28050001 RAL-783 1372 chr3R 28068495 28068530 chr3R 28073935 28073955 I-element 5 5438 0.5 2.0 1.2 2.3 5460 chr3R 28068495 intron CG34362 + chr3R 28071225 intron CG34362 + chr3R 28073955 intron CG34362 + chr3R_5_28070001 chr3R_28070001 RAL-783 1373 chr3R 28132490 28132507 chr3R 28132571 28132587 5 81 2.5 1.0 1.8 1.8 97 chr3R 28132490 intergenic not near genes chr3R 28132538 intergenic not near genes chr3R 28132587 intergenic not near genes chr3R_5_28130001 chr3R_28130001 RAL-783 1374 chr3R 28253345 28253370 chr3R 28255855 28255879 jockey 7 2509 5.0 3.5 4.2 1.3 2534 chr3R 28253345 intergenic not near genes chr3R 28254612 intergenic not near genes chr3R 28255879 intergenic not near genes chr3R_7_28250001 chr3R_28250001 RAL-783 1375 chr3R 28330292 28330322 chr3R 28330535 28330565 5 243 1.5 1.5 1.5 2.0 273 chr3R 28330292 intron larp - chr3R 28330428 intron larp - chr3R 28330565 intron larp - chr3R_5_28330001 chr3R_28330001 RAL-783 1376 chr3R 28331516 28331530 chr3R 28331595 28331609 4 79 1.0 0.5 0.8 2.2 93 chr3R 28331516 intron larp - chr3R 28331562 intron larp - chr3R 28331609 intron larp - chr3R_4_28330001 chr3R_28330001 RAL-783 1377 chr3R 28407714 28407740 chr3R 28407800 28407826 4 86 2.5 5.0 3.8 0.8 112 chr3R 28407714 intergenic not near genes chr3R 28407770 intergenic not near genes chr3R 28407826 intergenic not near genes chr3R_4_28405001 chr3R_28405001 RAL-783 1378 chr3R 28441987 28442015 chr3R 28442082 28442109 5 95 9.5 2.0 5.8 0.7 122 chr3R 28441987 intron beat-VI + chr3R 28442048 intron beat-VI + chr3R 28442109 intron beat-VI + chr3R_5_28440001 chr3R_28440001 RAL-783 1379 chr3R 28484353 28484375 chr3R 28486270 28486292 48 1918 39.5 79.0 59.2 0.8 1939 chr3R 28484353 intergenic CG1894 + chr3R 28485322 exon CG1894 + chr3R 28486292 intergenic CG1894 + chr3R_48_28485001 chr3R_28485001 RAL-783 1380 chr3R 28594116 28594131 chr3R 28594195 28594210 8 78 1.0 3.0 2.0 2.7 94 chr3R 28594116 5` UTR CR43440 + chr3R 28594163 5` UTR CR43440 + chr3R 28594210 5` UTR CR43440 + chr3R_8_28590001 chr3R_28590001 RAL-783 1381 chr3R 28616477 28616502 chr3R 28616568 28616596 7 93 2.0 0.0 1.0 3.5 119 chr3R 28616477 intron CG10011 - chr3R 28616536 intron CG10011 - chr3R 28616596 intron CG10011 - chr3R_7_28615001 chr3R_28615001 RAL-783 1382 chr3R 28792887 28792903 chr3R 28797982 28797998 jockey 5 5094 1.5 4.0 2.8 1.3 5111 chr3R 28792887 intergenic not near genes chr3R 28795442 intergenic not near genes chr3R 28797998 intergenic not near genes chr3R_5_28795001 chr3R_28795001 RAL-783 1383 chr3R 28830900 28830915 chr3R 28830978 28830993 4 78 3.0 3.5 3.2 1.0 93 chr3R 28830900 intron WASp - chr3R 28830946 intron WASp - chr3R 28830993 intron WASp - chr3R_4_28830001 chr3R_28830001 RAL-783 1384 chr3R 21907534 21907536 chr3R 28831801 28831802 30 6924266 17.5 14.5 16.0 1.8 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_30_25365001 chr3R_25365001 RAL-783 1385 chr3R 28992771 28992794 chr3R 28992849 28992872 8 78 1.0 2.0 1.5 3.2 101 chr3R 28992771 intergenic wat - chr3R 28992822 intergenic wat - chr3R 28992872 intergenic wat - chr3R_8_28990001 chr3R_28990001 RAL-783 1386 chr3R 29059373 29059402 chr3R 29059467 29059495 12 93 2.0 1.5 1.8 4.3 122 chr3R 29059373 3` UTR Cul5 - chr3R 29059434 3` UTR Cul5 - chr3R 29059495 3` UTR Cul5 - chr3R_12_29055001 chr3R_29055001 RAL-783 1387 chr3R 29079399 29079405 chr3R 29080771 29080777 NOF 5 1372 1.5 0.0 0.8 2.8 1378 chr3R 29079399 intron CG11873 + chr3R 29080088 intron CG11873 + chr3R 29080777 intron CG11873 + chr3R_5_29080001 chr3R_29080001 RAL-783 1388 chr3R 29213060 29213092 chr3R 29213143 29213175 9 82 1.0 3.5 2.2 2.8 115 chr3R 29213060 intergenic not near genes chr3R 29213118 intergenic not near genes chr3R 29213175 intergenic not near genes chr3R_9_29210001 chr3R_29210001 RAL-783 1389 chr3R 29237247 29237285 chr3R 29239268 29239269 7 2016 18.0 4.5 11.2 0.6 2022 chr3R 29237247 exon CG11951 - chr3R 29238258 intron CG11951 - chr3R 29239269 exon CG31427 - chr3R_7_29235001 chr3R_29235001 RAL-783 1390 chr3R 29239237 29239246 chr3R 29245528 29245537 4 6291 4.5 12.0 8.2 0.4 6300 chr3R 29239237 exon CG31427 - chr3R 29242387 exon CG31445 - chr3R 29245537 exon SP1029 - chr3R_4_29240001 chr3R_29240001 RAL-783 1391 chr3R 29281262 29281298 chr3R 29281344 29281380 16 79 2.0 2.0 2.0 5.3 118 chr3R 29281262 intergenic not near genes chr3R 29281321 intergenic not near genes chr3R 29281380 intergenic not near genes chr3R_16_29280001 chr3R_29280001 RAL-783 1392 chr3R 29319821 29319843 chr3R 29320140 29320162 jockey 5 319 2.0 3.5 2.8 1.3 341 chr3R 29319821 intergenic Cnx99A - chr3R 29319992 intergenic Cnx99A - chr3R 29320162 intergenic not near genes chr3R_5_29315001 chr3R_29315001 RAL-783 1393 chr3R 29332284 29332309 chr3R 29332361 29332386 5 77 3.0 0.5 1.8 1.8 102 chr3R 29332284 intergenic not near genes chr3R 29332335 intergenic not near genes chr3R 29332386 intergenic not near genes chr3R_5_29330001 chr3R_29330001 RAL-783 1394 chr3R 29389488 29389513 chr3R 29389561 29389592 9 78 3.5 1.5 2.5 2.6 104 chr3R 29389488 intron Ptp99A + chr3R 29389540 intron Ptp99A + chr3R 29389592 intron Ptp99A + chr3R_9_29385001 chr3R_29385001 RAL-783 1395 chr3R 29402982 29403003 chr3R 29403077 29403098 6 95 2.0 1.0 1.5 2.4 116 chr3R 29402982 intron Ptp99A + chr3R 29403040 intron Ptp99A + chr3R 29403098 intron Ptp99A + chr3R_6_29400001 chr3R_29400001 RAL-783 1396 chr3R 29406621 29406628 chr3R 29407907 29407914 jockey 4 1286 3.0 5.0 4.0 0.8 1293 chr3R 29406621 intron Ptp99A + chr3R 29407268 intron Ptp99A + chr3R 29407914 intron Ptp99A + chr3R_4_29405001 chr3R_29405001 RAL-783 1397 chr3R 29406630 29406645 chr3R 29407902 29407931 jockey 7 1283 1.5 4.0 2.8 1.8 1301 chr3R 29406630 intron Ptp99A + chr3R 29407280 intron Ptp99A + chr3R 29407931 intron Ptp99A + chr3R_7_29405001 chr3R_29405001 RAL-783 1398 chr3R 29472022 29472035 chr3R 29472107 29472118 4 88 2.5 4.0 3.2 1.0 96 chr3R 29472022 intron Ptp99A + chr3R 29472070 intron Ptp99A + chr3R 29472118 intron Ptp99A + chr3R_4_29470001 chr3R_29470001 RAL-783 1399 chr3R 29498900 29498928 chr3R 29499030 29499058 6 130 3.5 1.0 2.2 1.9 158 chr3R 29498900 3` UTR CG2010 + chr3R 29498979 intergenic Trc8 -,CG2010 + chr3R 29499058 3` UTR Trc8 - chr3R_6_29495001 chr3R_29495001 RAL-783 1400 chr3R 29606094 29606104 chr3R 29606201 29606211 4 106 3.0 3.0 3.0 1.0 117 chr3R 29606094 intron alph + chr3R 29606152 intron alph + chr3R 29606211 intron alph + chr3R_4_29605001 chr3R_29605001 RAL-783 1401 chr3R 29623608 29623622 chr3R 29623692 29623705 8 83 2.0 5.0 3.5 1.8 97 chr3R 29623608 intergenic not near genes chr3R 29623656 intergenic not near genes chr3R 29623705 intergenic not near genes chr3R_8_29620001 chr3R_29620001 RAL-783 1402 chr3R 29643826 29643855 chr3R 29643918 29643947 4 92 2.0 4.0 3.0 1.0 121 chr3R 29643826 intron Dop1R2 - chr3R 29643886 intron Dop1R2 - chr3R 29643947 intron Dop1R2 - chr3R_4_29640001 chr3R_29640001 RAL-783 1403 chr3R 29708556 29708587 chr3R 29708632 29708643 4 72 1.5 2.0 1.8 1.4 87 chr3R 29708556 intergenic not near genes chr3R 29708600 intergenic not near genes chr3R 29708643 intergenic not near genes chr3R_4_29705001 chr3R_29705001 RAL-783 1404 chr3R 29738264 29738290 chr3R 29739731 29739757 hobo 7 1467 3.0 3.0 3.0 1.8 1493 chr3R 29738264 intergenic CG1969 +,CG7598 + chr3R 29739010 intron CG1969 + chr3R 29739757 5` UTR CG1969 + chr3R_7_29735001 chr3R_29735001 RAL-783 1405 chr3R 29758937 29758970 chr3R 29759015 29759048 7 76 2.0 2.5 2.2 2.2 111 chr3R 29758937 3` UTR CR44953 - chr3R 29758992 3` UTR CR44953 - chr3R 29759048 intergenic CR44953 - chr3R_7_29755001 chr3R_29755001 RAL-783 1406 chr3R 29826716 29826749 chr3R 29826810 29826841 10 91 1.0 4.0 2.5 2.9 125 chr3R 29826716 intergenic not near genes chr3R 29826778 intergenic not near genes chr3R 29826841 intergenic Atg16 - chr3R_10_29825001 chr3R_29825001 RAL-783 1407 chr3R 29882018 29882043 chr3R 29891175 29891199 roo 6 9156 5.5 2.5 4.0 1.2 9181 chr3R 29882018 intron CG31038 + chr3R 29886608 intron CG31038 + chr3R 29891199 intron CG31038 + chr3R_6_29885001 chr3R_29885001 RAL-783 1408 chr3R 29968772 29968793 chr3R 29968948 29968977 5 182 5.0 3.0 4.0 1.0 205 chr3R 29968772 intron TkR99D - chr3R 29968874 intron TkR99D - chr3R 29968977 intron TkR99D - chr3R_5_29965001 chr3R_29965001 RAL-783 1409 chr3R 29986062 29986088 chr3R 29986141 29986169 9 78 1.5 1.5 1.5 3.6 107 chr3R 29986062 exon CG7896 + chr3R 29986116 intron CG7896 + chr3R 29986169 intron CG7896 + chr3R_9_29985001 chr3R_29985001 RAL-783 1410 chr3R 30075565 30075590 chr3R 30075654 30075679 4 89 1.0 2.5 1.8 1.4 114 chr3R 30075565 intron sima + chr3R 30075622 intron sima + chr3R 30075679 intron sima + chr3R_4_30075001 chr3R_30075001 RAL-783 1411 chr3R 30084849 30084885 chr3R 30086316 30086352 hobo 10 1467 0.5 6.0 3.2 2.4 1503 chr3R 30084849 intron sima + chr3R 30085600 intron sima + chr3R 30086352 intron sima + chr3R_10_30085001 chr3R_30085001 RAL-783 1412 chr3R 30156870 30156898 chr3R 30156949 30156976 10 78 3.0 2.5 2.8 2.6 106 chr3R 30156870 intron CG11498 - chr3R 30156923 intron CG11498 - chr3R 30156976 intron CG11498 - chr3R_10_30155001 chr3R_30155001 RAL-783 1413 chr3R 30253693 30253706 chr3R 30253804 30253816 4 110 2.5 2.5 2.5 1.1 123 chr3R 30253693 exon CG18404 + chr3R 30253754 intron CG18404 + chr3R 30253816 intron CG18404 + chr3R_4_30250001 chr3R_30250001 RAL-783 1414 chr3R 30307145 30307153 chr3R 30307203 30307232 5 76 2.0 3.0 2.5 1.4 87 chr3R 30307145 intron hdc + chr3R 30307188 intron hdc + chr3R 30307232 intron hdc + chr3R_5_30305001 chr3R_30305001 RAL-783 1415 chr3R 30396218 30396246 chr3R 30404483 30404512 roo 5 8266 3.0 3.5 3.2 1.2 8294 chr3R 30396218 intergenic not near genes chr3R 30400365 intergenic not near genes chr3R 30404512 5` UTR CR45570 + chr3R_5_30400001 chr3R_30400001 RAL-783 1416 chr3R 30473684 30473694 chr3R 30473797 30473807 4 114 5.5 3.5 4.5 0.7 123 chr3R 30473684 intron PH4alphaEFB + chr3R 30473746 intron PH4alphaEFB + chr3R 30473807 intron PH4alphaEFB + chr3R_4_30470001 chr3R_30470001 RAL-783 1417 chr3R 30480473 30480509 chr3R 30482941 30482973 jockey 9 2467 4.0 4.0 4.0 1.8 2500 chr3R 30480473 intron PH4alphaEFB + chr3R 30481723 intron PH4alphaEFB + chr3R 30482973 intron PH4alphaEFB + chr3R_9_30480001 chr3R_30480001 RAL-783 1418 chr3R 30536497 30536516 chr3R 30536578 30536585 4 75 3.5 0.0 1.8 1.4 88 chr3R 30536497 intron tmod + chr3R 30536541 intron tmod + chr3R 30536585 intron tmod + chr3R_4_30535001 chr3R_30535001 RAL-783 1419 chr3R 30539805 30539832 chr3R 30539882 30539909 4 77 2.0 1.5 1.8 1.4 104 chr3R 30539805 intron tmod + chr3R 30539857 intron tmod + chr3R 30539909 intron tmod + chr3R_4_30535001 chr3R_30535001 RAL-783 1420 chr3R 30564329 30564347 chr3R 30564412 30564430 4 82 2.0 3.0 2.5 1.1 101 chr3R 30564329 intron tmod + chr3R 30564380 intron tmod + chr3R 30564430 intron tmod + chr3R_4_30560001 chr3R_30560001 RAL-783 1421 chr3R 30643052 30643086 chr3R 30643149 30643183 5 96 2.0 0.0 1.0 2.5 131 chr3R 30643052 intergenic not near genes chr3R 30643118 intergenic not near genes chr3R 30643183 intergenic not near genes chr3R_5_30640001 chr3R_30640001 RAL-783 1422 chr3R 30689518 30689551 chr3R 30689597 30689626 6 78 0.5 0.5 0.5 4.0 108 chr3R 30689518 intergenic not near genes chr3R 30689572 intergenic not near genes chr3R 30689626 intergenic not near genes chr3R_6_30685001 chr3R_30685001 RAL-783 1423 chr3R 30818826 30818845 chr3R 30820391 30820402 1360 4 1563 2.0 1.5 1.8 1.4 1576 chr3R 30818826 intron cindr + chr3R 30819614 intron cindr + chr3R 30820402 intron cindr + chr3R_4_30815001 chr3R_30815001 RAL-783 1424 chr3R 30973133 30973159 chr3R 30973294 30973319 5 161 4.0 1.0 2.5 1.4 186 chr3R 30973133 intron 5-HT7 - chr3R 30973226 intron 5-HT7 - chr3R 30973319 intron 5-HT7 - chr3R_5_30970001 chr3R_30970001 RAL-783 1425 chr3R 31042115 31042134 chr3R 31042202 31042218 12 87 4.5 2.0 3.2 2.9 103 chr3R 31042115 intron CanA1 + chr3R 31042166 intron CanA1 + chr3R 31042218 intron CanA1 + chr3R_12_31040001 chr3R_31040001 RAL-783 1426 chr3R 31069653 31069664 chr3R 31069743 31069759 5 94 1.5 1.0 1.2 2.3 106 chr3R 31069653 intron Sox100B + chr3R 31069706 intron Sox100B + chr3R 31069759 intron Sox100B + chr3R_5_31065001 chr3R_31065001 RAL-783 1427 chr3R 31074230 31074261 chr3R 31081828 31081859 springer 9 7598 3.5 2.5 3.0 2.2 7629 chr3R 31074230 intron Sox100B + chr3R 31078044 intron Sox100B + chr3R 31081859 intron Sox100B + chr3R_9_31075001 chr3R_31075001 RAL-783 1428 chr3R 31105217 31105248 chr3R 31105474 31105505 7 256 3.0 2.5 2.8 1.8 288 chr3R 31105217 intergenic not near genes chr3R 31105361 intergenic not near genes chr3R 31105505 intergenic not near genes chr3R_7_31105001 chr3R_31105001 RAL-783 1429 chr3R 31109762 31109793 chr3R 31109839 31109870 6 77 0.5 3.0 1.8 2.1 108 chr3R 31109762 intergenic not near genes chr3R 31109816 intergenic not near genes chr3R 31109870 intergenic not near genes chr3R_6_31105001 chr3R_31105001 RAL-783 1430 chr3R 31261991 31262018 chr3R 31262088 31262115 8 97 3.5 1.0 2.2 2.5 124 chr3R 31261991 intergenic CG18672 + chr3R 31262053 intergenic CG18672 + chr3R 31262115 intergenic CG18672 +,CG18673 + chr3R_8_31260001 chr3R_31260001 RAL-783 1431 chr3R 31279372 31279394 chr3R 31285563 31285563 diver 9 6185 4.0 1.5 2.8 2.4 6191 chr3R 31279372 intergenic not near genes chr3R 31282468 intergenic not near genes chr3R 31285563 intergenic not near genes chr3R_9_31280001 chr3R_31280001 RAL-783 1432 chr3R 31279400 31279409 chr3R 31285562 31285578 diver 4 6172 1.5 1.5 1.5 1.6 6178 chr3R 31279400 intergenic not near genes chr3R 31282489 intergenic not near genes chr3R 31285578 intergenic not near genes chr3R_4_31280001 chr3R_31280001 RAL-783 1433 chr3R 31413088 31413120 chr3R 31418288 31418318 copia 14 5199 2.5 1.0 1.8 5.0 5230 chr3R 31413088 intron Gprk2 + chr3R 31415703 intron Gprk2 + chr3R 31418318 intron Gprk2 + chr3R_14_31415001 chr3R_31415001 RAL-783 1434 chr3R 31422544 31422554 chr3R 31422634 31422645 7 91 4.5 3.0 3.8 1.5 101 chr3R 31422544 intron Gprk2 + chr3R 31422594 intron Gprk2 + chr3R 31422645 intron Gprk2 + chr3R_7_31420001 chr3R_31420001 RAL-783 1435 chr3R 31426882 31426903 chr3R 31426974 31426995 7 92 2.5 2.0 2.2 2.2 113 chr3R 31426882 intron Gprk2 + chr3R 31426938 intron Gprk2 + chr3R 31426995 intron Gprk2 + chr3R_7_31425001 chr3R_31425001 RAL-783 1436 chr3R 31435367 31435391 chr3R 31435519 31435543 7 152 1.5 2.0 1.8 2.5 176 chr3R 31435367 intron Gprk2 + chr3R 31435455 intron Gprk2 + chr3R 31435543 intron Gprk2 + chr3R_7_31435001 chr3R_31435001 RAL-783 1437 chr3R 31442270 31442296 chr3R 31442355 31442381 14 85 1.5 4.0 2.8 3.7 111 chr3R 31442270 intron Gprk2 + chr3R 31442326 intron Gprk2 + chr3R 31442381 intron Gprk2 + chr3R_14_31440001 chr3R_31440001 RAL-783 1438 chr3R 31448606 31448627 chr3R 31448680 31448693 7 72 6.5 3.0 4.8 1.2 87 chr3R 31448606 intron Gprk2 + chr3R 31448650 intron Gprk2 + chr3R 31448693 intron Gprk2 + chr3R_7_31445001 chr3R_31445001 RAL-783 1439 chr3R 31539344 31539356 chr3R 31539428 31539431 7 83 2.5 3.5 3.0 1.8 87 chr3R 31539344 intergenic not near genes chr3R 31539388 intergenic not near genes chr3R 31539431 intergenic not near genes chr3R_7_31535001 chr3R_31535001 RAL-783 1440 chr3R 31539865 31539885 chr3R 31539949 31539970 7 85 1.5 1.0 1.2 3.2 105 chr3R 31539865 intergenic not near genes chr3R 31539918 intergenic not near genes chr3R 31539970 intergenic not near genes chr3R_7_31535001 chr3R_31535001 RAL-783 1441 chr3R 31670610 31670631 chr3R 31670702 31670724 5 93 0.5 3.0 1.8 1.8 114 chr3R 31670610 intron CG1815 + chr3R 31670667 intron CG1815 + chr3R 31670724 intron CG1815 + chr3R_5_31670001 chr3R_31670001 RAL-783 1442 chr3R 31691536 31691557 chr3R 31696301 31696308 Doc 6 4758 2.5 6.5 4.5 1.1 4772 chr3R 31691536 intergenic not near genes chr3R 31693922 intergenic not near genes chr3R 31696308 intergenic not near genes chr3R_6_31690001 chr3R_31690001 RAL-783 1443 chr3R 31691560 31691561 chr3R 31696298 31696301 Doc 5 4755 2.0 6.5 4.2 1.0 4741 chr3R 31691560 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696301 intergenic not near genes chr3R_5_31690001 chr3R_31690001 RAL-783 1444 chr3R 31699737 31699745 chr3R 31699819 31699827 5 81 1.5 3.5 2.5 1.4 90 chr3R 31699737 intergenic not near genes chr3R 31699782 intergenic not near genes chr3R 31699827 intergenic not near genes chr3R_5_31695001 chr3R_31695001 RAL-783 1445 chr3R 31831543 31831570 chr3R 31831622 31831649 8 78 4.5 2.5 3.5 1.8 106 chr3R 31831543 intron RhoGAP100F + chr3R 31831596 intron RhoGAP100F + chr3R 31831649 intron RhoGAP100F + chr3R_8_31830001 chr3R_31830001 RAL-783 1446 chr3R 31863322 31863327 chr3R 31863406 31863408 4 83 2.0 3.5 2.8 1.1 86 chr3R 31863322 intron heph - chr3R 31863365 intron heph - chr3R 31863408 intron heph - chr3R_4_31860001 chr3R_31860001 RAL-783 1447 chr3R 31870656 31870687 chr3R 31870747 31870778 10 91 2.5 2.0 2.2 3.1 122 chr3R 31870656 intron heph - chr3R 31870717 intron heph - chr3R 31870778 intron heph - chr3R_10_31870001 chr3R_31870001 RAL-783 1448 chr3R 31949505 31949538 chr3R 31949588 31949594 8 81 5.5 2.0 3.8 1.7 89 chr3R 31949505 intron heph - chr3R 31949550 intron heph - chr3R 31949594 intron heph - chr3R_8_31945001 chr3R_31945001 RAL-783 1449 chr3R 32022331 32022352 chr3R 32022432 32022452 10 101 2.5 4.5 3.5 2.2 121 chr3R 32022331 5` UTR CR45557 + chr3R 32022392 5` UTR CR45557 + chr3R 32022452 5` UTR CR45557 + chr3R_10_32020001 chr3R_32020001 RAL-783 1450 chr3R 32045583 32045604 chr3R 32045664 32045685 4 81 0.0 1.0 0.5 2.7 102 chr3R 32045583 3` UTR krz - chr3R 32045634 3` UTR krz - chr3R 32045685 3` UTR krz - chr3R_4_32045001 chr3R_32045001 RAL-783 1451 chr4 61367 61383 chr4 61579 61595 6 212 1.5 2.0 1.8 2.1 228 chr4 61367 intron CR43957 + chr4 61481 intron CR43957 + chr4 61595 intron CR43957 + chr4_6_60001 chr4_60001 RAL-783 1452 chr4 336133 336160 chr4 336376 336403 6 242 1.5 1.0 1.2 2.7 270 chr4 336133 intron PMCA - chr4 336268 intron PMCA - chr4 336403 intron PMCA - chr4_6_335001 chr4_335001 RAL-783 1453 chr4 671617 671631 chr4 680194 680214 Tirant 10 8582 4.0 5.0 4.5 1.8 8597 chr4 671617 intron CG11360 + chr4 675916 intron CG11360 + chr4 680214 intron CG11360 + chr4_10_675001 chr4_675001 RAL-783 1454 chrX 428420 428447 chrX 434603 434632 3S18 6 6185 2.0 1.0 1.5 2.4 6212 chrX 428420 intron CG32816 - chrX 431526 intron CG32816 - chrX 434632 intron CG32816 - chrX_6_430001 chrX_430001 RAL-783 1455 chrX 440994 441010 chrX 441072 441087 6 78 4.0 2.5 3.2 1.4 93 chrX 440994 intron CG32816 - chrX 441040 intron CG32816 - chrX 441087 intron CG32816 - chrX_6_440001 chrX_440001 RAL-783 1456 chrX 458851 458882 chrX 459310 459340 8 459 5.0 1.0 3.0 2.0 489 chrX 458851 intron CG32816 - chrX 459096 intron CG32816 - chrX 459340 intron CG32816 - chrX_8_455001 chrX_455001 RAL-783 1457 chrX 494599 494635 chrX 494691 494727 4 87 3.5 1.0 2.2 1.2 128 chrX 494599 intergenic CG17778 + chrX 494663 5` UTR CG17778 + chrX 494727 intron CG17778 + chrX_4_490001 chrX_490001 RAL-783 1458 chrX 547632 547664 chrX 547876 547908 7 244 1.0 3.0 2.0 2.3 276 chrX 547632 intron Appl + chrX 547770 intron Appl + chrX 547908 intron Appl + chrX_7_545001 chrX_545001 RAL-783 1459 chrX 551443 551453 chrX 558982 559014 412 5 7556 4.0 1.5 2.8 1.3 7571 chrX 551443 intron Appl + chrX 555228 intron Appl + chrX 559014 intron Appl + chrX_5_555001 chrX_555001 RAL-783 1460 chrX 617979 618004 chrX 618059 618084 8 80 1.0 1.0 1.0 4.0 105 chrX 617979 intron CG13366 - chrX 618032 intron CG13366 - chrX 618084 intron CG13366 - chrX_8_615001 chrX_615001 RAL-783 1461 chrX 667650 667675 chrX 667734 667759 5 84 1.0 1.0 1.0 2.5 109 chrX 667650 intergenic not near genes chrX 667704 intergenic not near genes chrX 667759 intergenic not near genes chrX_5_665001 chrX_665001 RAL-783 1462 chrX 670267 670291 chrX 670346 670371 5 75 0.5 0.5 0.5 3.3 104 chrX 670267 intergenic not near genes chrX 670319 intergenic not near genes chrX 670371 intergenic not near genes chrX_5_670001 chrX_670001 RAL-783 1463 chrX 726086 726118 chrX 726170 726202 4 84 0.5 3.5 2.0 1.3 116 chrX 726086 intron sdk + chrX 726144 intron sdk + chrX 726202 intron sdk + chrX_4_725001 chrX_725001 RAL-783 1464 chrX 778131 778154 chrX 778221 778240 5 89 4.0 0.5 2.2 1.6 109 chrX 778131 intron fz3 + chrX 778186 intron fz3 + chrX 778240 intron fz3 + chrX_5_775001 chrX_775001 RAL-783 1465 chrX 806790 806808 chrX 806886 806904 5 96 2.5 5.5 4.0 1.0 114 chrX 806790 intron Sec22 + chrX 806847 intron Sec22 + chrX 806904 intron Sec22 + chrX_5_805001 chrX_805001 RAL-783 1466 chrX 826383 826417 chrX 826544 826578 8 161 1.5 1.0 1.2 3.6 195 chrX 826383 intron CG43867 - chrX 826480 intron CG43867 - chrX 826578 intron CG43867 - chrX_8_825001 chrX_825001 RAL-783 1467 chrX 962010 962031 chrX 962476 962497 5 466 5.5 1.5 3.5 1.1 487 chrX 962010 intergenic not near genes chrX 962254 intergenic not near genes chrX 962497 intergenic not near genes chrX_5_960001 chrX_960001 RAL-783 1468 chrX 1095325 1095335 chrX 1095407 1095418 4 82 3.5 1.0 2.2 1.2 93 chrX 1095325 intron CG3655 - chrX 1095372 intron CG3655 - chrX 1095418 intron CG3655 - chrX_4_1095001 chrX_1095001 RAL-783 1469 chrX 1253730 1253764 chrX 1253812 1253846 14 81 2.0 2.5 2.2 4.4 116 chrX 1253730 intron Atf3 - chrX 1253788 intron Atf3 - chrX 1253846 intron Atf3 - chrX_14_1250001 chrX_1250001 RAL-783 1470 chrX 1357778 1357806 chrX 1367947 1367975 Doc 6 10170 2.0 1.0 1.5 2.4 10197 chrX 1357778 intergenic png - chrX 1362876 intergenic not near genes chrX 1367975 intergenic not near genes chrX_6_1360001 chrX_1360001 RAL-783 1471 chrX 1518036 1518070 chrX 1523438 1523472 jockey 12 5402 1.0 5.5 3.2 2.9 5436 chrX 1518036 intergenic inc + chrX 1520754 intergenic not near genes chrX 1523472 intergenic not near genes chrX_12_1520001 chrX_1520001 RAL-783 1472 chrX 1627977 1628001 chrX 1635444 1635465 gtwin 9 7467 2.5 3.5 3.0 2.2 7488 chrX 1627977 intron,intron Mur2B -,br + chrX 1631721 intron,intron Mur2B -,br + chrX 1635465 intron,intron Mur2B -,br + chrX_9_1630001 chrX_1630001 RAL-783 1473 chrX 2419699 2419731 chrX 2419787 2419819 7 86 0.5 1.5 1.0 3.5 120 chrX 2419699 intergenic not near genes chrX 2419759 intergenic not near genes chrX 2419819 intergenic not near genes chrX_7_2415001 chrX_2415001 RAL-783 1474 chrX 2454474 2454494 chrX 2454554 2454574 7 78 0.5 3.0 1.8 2.5 100 chrX 2454474 intron boi - chrX 2454524 intron boi - chrX 2454574 intron boi - chrX_7_2450001 chrX_2450001 RAL-783 1475 chrX 2664391 2664411 chrX 2665537 2665557 1360 4 1146 1.0 3.0 2.0 1.3 1166 chrX 2664391 intron sgg + chrX 2664974 intron sgg + chrX 2665557 intron sgg + chrX_4_2660001 chrX_2660001 RAL-783 1476 chrX 2844905 2844931 chrX 2852315 2852341 mdg1 5 7410 0.5 2.0 1.2 2.3 7436 chrX 2844905 intron kirre + chrX 2848623 intron kirre + chrX 2852341 intron kirre + chrX_5_2845001 chrX_2845001 RAL-783 1477 chrX 2899181 2899205 chrX 2899310 2899334 5 129 2.5 1.0 1.8 1.8 153 chrX 2899181 intron kirre + chrX 2899258 intron kirre + chrX 2899334 intron kirre + chrX_5_2895001 chrX_2895001 RAL-783 1478 chrX 3058037 3058051 chrX 3058278 3058291 pogo 4 241 3.0 2.0 2.5 1.1 254 chrX 3058037 intron kirre + chrX 3058164 intron kirre + chrX 3058291 intron kirre + chrX_4_3055001 chrX_3055001 RAL-783 1479 chrX 3075636 3075649 chrX 3080943 3080955 Transpac 6 5306 2.0 0.5 1.2 2.7 5319 chrX 3075636 intron kirre + chrX 3078296 intron kirre + chrX 3080955 intron kirre + chrX_6_3075001 chrX_3075001 RAL-783 1480 chrX 3109452 3109467 chrX 3109529 3109544 7 77 2.5 3.0 2.8 1.8 92 chrX 3109452 intron kirre + chrX 3109498 intron kirre + chrX 3109544 intron kirre + chrX_7_3105001 chrX_3105001 RAL-783 1481 chrX 3408991 3409017 chrX 3409068 3409094 6 77 0.0 1.5 0.8 3.3 103 chrX 3408991 intron,intron CR44999 +,CG12535 - chrX 3409042 intron,intron CR44999 +,CG12535 - chrX 3409094 intron,intron CR44999 +,CG12535 - chrX_6_3405001 chrX_3405001 RAL-783 1482 chrX 3493089 3493120 chrX 3502248 3502279 roo 14 9159 3.5 1.5 2.5 4.0 9190 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502279 intron,intron CR44999 +,Gas8 - chrX_14_3495001 chrX_3495001 RAL-783 1483 chrX 3513757 3513791 chrX 3513840 3513874 8 83 2.0 1.0 1.5 3.2 117 chrX 3513757 intron,intron CR44999 +,CG32791 - chrX 3513816 intron,intron CR44999 +,CG32791 - chrX 3513874 intron,intron CR44999 +,CG32791 - chrX_8_3510001 chrX_3510001 RAL-783 1484 chrX 3535412 3535425 chrX 3535503 3535516 5 91 2.0 3.0 2.5 1.4 104 chrX 3535412 intron CG32791 - chrX 3535464 intron CG32791 - chrX 3535516 intron CG32791 - chrX_5_3535001 chrX_3535001 RAL-783 1485 chrX 3597549 3597580 chrX 3619717 3619748 roo 8 22166 3.5 2.5 3.0 2.0 22199 chrX 3597549 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619748 intron AstA-R1 + chrX_8_3605001 chrX_3605001 RAL-783 1486 chrX 3726763 3726797 chrX 3730160 3730193 NOF 6 3394 2.0 3.0 2.5 1.7 3430 chrX 3726763 intron tlk + chrX 3728478 intron tlk + chrX 3730193 intron tlk + chrX_6_3725001 chrX_3725001 RAL-783 1487 chrX 3798068 3798072 chrX 3798152 3798163 4 89 0.5 7.5 4.0 0.8 95 chrX 3798068 intergenic not near genes chrX 3798116 intergenic not near genes chrX 3798163 intergenic not near genes chrX_4_3795001 chrX_3795001 RAL-783 1488 chrX 3842326 3842349 chrX 3842567 3842590 pogo 5 241 2.5 2.5 2.5 1.4 264 chrX 3842326 intron ec + chrX 3842458 intron ec + chrX 3842590 intron ec + chrX_5_3840001 chrX_3840001 RAL-783 1489 chrX 3866115 3866135 chrX 3866193 3866213 7 78 1.0 3.5 2.2 2.2 98 chrX 3866115 intron yin - chrX 3866164 intron yin - chrX 3866213 intron yin - chrX_7_3865001 chrX_3865001 RAL-783 1490 chrX 3922150 3922157 chrX 3922401 3922432 6 270 0.5 2.0 1.2 2.7 282 chrX 3922150 intron CG42541 - chrX 3922291 intron CG42541 - chrX 3922432 intron CG42541 - chrX_6_3920001 chrX_3920001 RAL-783 1491 chrX 4262754 4262787 chrX 4262853 4262885 10 98 2.5 2.5 2.5 2.9 131 chrX 4262754 intergenic not near genes chrX 4262820 intergenic not near genes chrX 4262885 intergenic not near genes chrX_10_4260001 chrX_4260001 RAL-783 1492 chrX 4267325 4267348 chrX 4267405 4267428 7 80 1.0 2.5 1.8 2.5 103 chrX 4267325 intergenic not near genes chrX 4267376 intergenic not near genes chrX 4267428 intergenic not near genes chrX_7_4265001 chrX_4265001 RAL-783 1493 chrX 4296117 4296144 chrX 4296194 4296220 7 76 0.0 4.5 2.2 2.2 103 chrX 4296117 intergenic not near genes chrX 4296168 intergenic not near genes chrX 4296220 intergenic not near genes chrX_7_4295001 chrX_4295001 RAL-783 1494 chrX 4324391 4324415 chrX 4324468 4324492 7 77 0.5 2.0 1.2 3.2 101 chrX 4324391 intron norpA + chrX 4324442 intron norpA + chrX 4324492 intron norpA + chrX_7_4320001 chrX_4320001 RAL-783 1495 chrX 3765226 3765236 chrX 4343744 4343751 4 578516 4.5 5.5 5.0 0.7 578525 chrX 3765226 intron tlk + chrX 4054488 intergenic not near genes chrX 4343751 intron norpA + chrX_4_4050001 chrX_4050001 RAL-783 1496 chrX 4496427 4496433 chrX 4496525 4496529 5 97 5.0 5.5 5.2 0.8 102 chrX 4496427 intron CR32773 - chrX 4496478 intron CR32773 - chrX 4496529 intron CR32773 - chrX_5_4495001 chrX_4495001 RAL-783 1497 chrX 4731823 4731833 chrX 4736916 4736925 jockey 5 5092 3.5 6.0 4.8 0.9 5102 chrX 4731823 intergenic not near genes chrX 4734374 intergenic not near genes chrX 4736925 intergenic not near genes chrX_5_4730001 chrX_4730001 RAL-783 1498 chrX 4763259 4763277 chrX 4763744 4763765 Stalker4 5 487 2.5 1.5 2.0 1.7 506 chrX 4763259 intergenic not near genes chrX 4763512 intergenic not near genes chrX 4763765 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-783 1499 chrX 4792398 4792409 chrX 4792825 4792841 jockey 4 431 2.5 6.0 4.2 0.8 443 chrX 4792398 intergenic not near genes chrX 4792620 intergenic not near genes chrX 4792841 intergenic not near genes chrX_4_4790001 chrX_4790001 RAL-783 1500 chrX 4827973 4828000 chrX 4835344 4835347 Stalker4 5 7358 2.0 5.0 3.5 1.1 7374 chrX 4827973 intergenic not near genes chrX 4831660 intergenic not near genes chrX 4835347 intergenic not near genes chrX_5_4830001 chrX_4830001 RAL-783 1501 chrX 5215093 5215110 chrX 5215179 5215194 5 86 4.0 0.5 2.2 1.6 101 chrX 5215093 intron,intron CG15465 +,rg + chrX 5215144 intron,intron CG15465 +,rg + chrX 5215194 intron,intron CG15465 +,rg + chrX_5_5215001 chrX_5215001 RAL-783 1502 chrX 5223708 5223727 chrX 5223785 5223805 4 78 3.0 5.5 4.2 0.8 97 chrX 5223708 intron,intron CG15465 +,rg + chrX 5223756 intron,intron CG15465 +,rg + chrX 5223805 intron,intron CG15465 +,rg + chrX_4_5220001 chrX_5220001 RAL-783 1503 chrX 5452864 5452895 chrX 5453051 5453083 7 188 1.0 2.0 1.5 2.8 219 chrX 5452864 intron SPR + chrX 5452974 intron SPR + chrX 5453083 intron SPR + chrX_7_5450001 chrX_5450001 RAL-783 1504 chrX 5485273 5485301 chrX 5485349 5485375 9 76 1.0 2.0 1.5 3.6 102 chrX 5485273 intron SPR + chrX 5485324 intron SPR + chrX 5485375 intron SPR + chrX_9_5485001 chrX_5485001 RAL-783 1505 chrX 5579524 5579556 chrX 5579647 5579665 9 118 2.0 1.0 1.5 3.6 141 chrX 5579524 intergenic not near genes chrX 5579594 intergenic not near genes chrX 5579665 intergenic not near genes chrX_9_5575001 chrX_5575001 RAL-783 1506 chrX 5798863 5798892 chrX 5799025 5799053 9 160 0.5 3.0 1.8 3.2 190 chrX 5798863 intergenic not near genes chrX 5798958 intergenic not near genes chrX 5799053 intergenic not near genes chrX_9_5795001 chrX_5795001 RAL-783 1507 chrX 5883815 5883837 chrX 5884054 5884078 pogo 5 241 3.0 1.5 2.2 1.6 263 chrX 5883815 intron CR45668 - chrX 5883946 intron CR45668 - chrX 5884078 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-783 1508 chrX 5884167 5884191 chrX 5884408 5884432 pogo 5 241 2.5 1.0 1.8 1.8 265 chrX 5884167 intron CR45668 - chrX 5884300 intron CR45668 - chrX 5884432 intron CR45668 - chrX_5_5880001 chrX_5880001 RAL-783 1509 chrX 5896980 5897006 chrX 5897120 5897147 6 141 1.5 2.0 1.8 2.1 167 chrX 5896980 intron CR45668 - chrX 5897064 intron CR45668 - chrX 5897147 intron CR45668 - chrX_6_5895001 chrX_5895001 RAL-783 1510 chrX 6171588 6171616 chrX 6179021 6179048 Quasimodo 6 7433 2.5 3.5 3.0 1.5 7460 chrX 6171588 intron Ca-alpha1T - chrX 6175318 intron Ca-alpha1T - chrX 6179048 intron Ca-alpha1T - chrX_6_6175001 chrX_6175001 RAL-783 1511 chrX 6312194 6312223 chrX 6312277 6312306 6 82 0.5 2.0 1.2 2.7 112 chrX 6312194 intron CG15894 + chrX 6312250 intron CG15894 + chrX 6312306 intron CG15894 + chrX_6_6310001 chrX_6310001 RAL-783 1512 chrX 6314201 6314222 chrX 6314291 6314314 8 92 1.0 1.5 1.2 3.6 113 chrX 6314201 intron CG15894 + chrX 6314258 intron CG15894 + chrX 6314314 intron CG15894 + chrX_8_6310001 chrX_6310001 RAL-783 1513 chrX 6335223 6335237 chrX 6337733 6337747 Tirant 5 2509 0.0 5.5 2.8 1.3 2524 chrX 6335223 intergenic not near genes chrX 6336485 intergenic not near genes chrX 6337747 intergenic CG3842 + chrX_5_6335001 chrX_6335001 RAL-783 1514 chrX 6562819 6562849 chrX 6571299 6571331 Tirant 8 8481 4.0 2.0 3.0 2.0 8512 chrX 6562819 intron CG34417 + chrX 6567075 intron CG34417 + chrX 6571331 intron CG34417 + chrX_8_6565001 chrX_6565001 RAL-783 1515 chrX 6605484 6605508 chrX 6608506 6608530 Burdock 4 3022 1.0 2.5 1.8 1.4 3046 chrX 6605484 intron pigs + chrX 6607007 intron pigs + chrX 6608530 intron pigs + chrX_4_6605001 chrX_6605001 RAL-783 1516 chrX 6662856 6662864 chrX 6663148 6663156 4 292 2.0 4.0 3.0 1.0 300 chrX 6662856 intron Ctr1A + chrX 6663006 intron Ctr1A + chrX 6663156 intron Ctr1A + chrX_4_6660001 chrX_6660001 RAL-783 1517 chrX 6897594 6897708 chrX 6897671 6897818 6 104 1.5 0.5 1.0 3.0 224 chrX 6897594 intergenic not near genes chrX 6897706 intergenic not near genes chrX 6897818 intergenic not near genes chrX_6_6895001 chrX_6895001 RAL-783 1518 chrX 7023609 7023627 chrX 7030998 7031017 Tabor 6 7390 5.0 2.0 3.5 1.3 7408 chrX 7023609 intron CG12541 - chrX 7027313 intron CG12541 - chrX 7031017 intron CG12541 - chrX_6_7025001 chrX_7025001 RAL-783 1519 chrX 7072844 7072866 chrX 7073387 7073413 4 542 2.0 3.5 2.8 1.1 569 chrX 7072844 intergenic CG4607 + chrX 7073128 intergenic CG4607 + chrX 7073413 intergenic not near genes chrX_4_7070001 chrX_7070001 RAL-783 1520 chrX 7125251 7125275 chrX 7134410 7134434 roo 9 9159 1.0 3.0 2.0 3.0 9183 chrX 7125251 intergenic not near genes chrX 7129842 intergenic not near genes chrX 7134434 intergenic not near genes chrX_9_7125001 chrX_7125001 RAL-783 1521 chrX 7294516 7294539 chrX 7294613 7294614 4 92 1.5 3.5 2.5 1.1 98 chrX 7294516 intron,intron CR44357 -,CG1677 - chrX 7294565 intron,intron CR44357 -,CG1677 - chrX 7294614 intron,intron CR44357 -,CG1677 - chrX_4_7290001 chrX_7290001 RAL-783 1522 chrX 7524045 7524078 chrX 7524132 7524165 10 87 1.5 1.0 1.2 4.5 120 chrX 7524045 intron CG32719 - chrX 7524105 intron CG32719 - chrX 7524165 intron CG32719 - chrX_10_7520001 chrX_7520001 RAL-783 1523 chrX 7702912 7702929 chrX 7703351 7703368 jockey 7 439 4.5 6.0 5.2 1.1 456 chrX 7702912 intron CHES-1-like - chrX 7703140 intron CHES-1-like - chrX 7703368 intron CHES-1-like - chrX_7_7700001 chrX_7700001 RAL-783 1524 chrX 7737134 7737146 chrX 7737245 7737258 4 112 2.0 1.5 1.8 1.4 124 chrX 7737134 5` UTR Tom40 + chrX 7737196 intron Tom40 + chrX 7737258 intron Tom40 + chrX_4_7735001 chrX_7735001 RAL-783 1525 chrX 7832433 7832460 chrX 7832522 7832549 5 88 1.5 0.5 1.0 2.5 116 chrX 7832433 intron CG1402 + chrX 7832491 intron CG1402 + chrX 7832549 intron CG1402 + chrX_5_7830001 chrX_7830001 RAL-783 1526 chrX 8063762 8063770 chrX 8063846 8063857 5 90 0.0 3.5 1.8 1.8 95 chrX 8063762 intron mys + chrX 8063810 intron mys + chrX 8063857 5` UTR mys + chrX_5_8060001 chrX_8060001 RAL-783 1527 chrX 8159816 8159844 chrX 8159901 8159927 7 85 1.0 3.5 2.2 2.2 111 chrX 8159816 intergenic CG15337 +,GIIIspla2 + chrX 8159872 intergenic CG15337 + chrX 8159927 intergenic CG15337 + chrX_7_8155001 chrX_8155001 RAL-783 1528 chrX 8214400 8214438 chrX 8214492 8214530 9 92 3.5 3.0 3.2 2.1 130 chrX 8214400 intron sdt + chrX 8214465 intron sdt + chrX 8214530 intron sdt + chrX_9_8210001 chrX_8210001 RAL-783 1529 chrX 8357768 8357802 chrX 8357863 8357897 7 94 0.5 1.5 1.0 3.5 129 chrX 8357768 intron nAChRalpha3 - chrX 8357832 intron nAChRalpha3 - chrX 8357897 intron nAChRalpha3 - chrX_7_8355001 chrX_8355001 RAL-783 1530 chrX 8421465 8421493 chrX 8421550 8421585 5 91 1.5 2.5 2.0 1.7 120 chrX 8421465 intron Trf2 + chrX 8421525 intron Trf2 + chrX 8421585 intron Trf2 + chrX_5_8420001 chrX_8420001 RAL-783 1531 chrX 8860774 8860802 chrX 8860858 8860886 5 84 0.0 1.5 0.8 2.8 112 chrX 8860774 intron CG12075 + chrX 8860830 intron CG12075 + chrX 8860886 intron CG12075 + chrX_5_8860001 chrX_8860001 RAL-783 1532 chrX 8922337 8922358 chrX 8922768 8922791 jockey 6 432 4.0 1.0 2.5 1.7 454 chrX 8922337 intron rdgA + chrX 8922564 intron rdgA + chrX 8922791 intron rdgA + chrX_6_8920001 chrX_8920001 RAL-783 1533 chrX 9062721 9062747 chrX 9062799 9062825 8 78 3.0 1.0 2.0 2.7 104 chrX 9062721 intron CG15365 - chrX 9062773 intron CG15365 - chrX 9062825 intron CG15365 - chrX_8_9060001 chrX_9060001 RAL-783 1534 chrX 9506529 9506559 chrX 9506642 9506673 7 114 1.0 1.0 1.0 3.5 144 chrX 9506529 3` UTR CG32700 - chrX 9506601 3` UTR CG32700 - chrX 9506673 3` UTR CG32700 - chrX_7_9505001 chrX_9505001 RAL-783 1535 chrX 9508140 9508168 chrX 9509658 9509683 jockey 5 1517 2.0 4.0 3.0 1.2 1543 chrX 9508140 intron CG32700 - chrX 9508912 intron CG32700 - chrX 9509683 intron CG32700 - chrX_5_9505001 chrX_9505001 RAL-783 1536 chrX 9575793 9575816 chrX 9576117 9576120 mdg3 5 319 3.0 3.0 3.0 1.2 327 chrX 9575793 intron,exon CG32699 -,CG42395 - chrX 9575956 intron,intron CG32699 -,CG42395 - chrX 9576120 intron,exon CG32699 -,CG42395 - chrX_5_9575001 chrX_9575001 RAL-783 1537 chrX 9599174 9599202 chrX 9599252 9599280 11 76 1.0 4.0 2.5 3.1 106 chrX 9599174 intergenic not near genes chrX 9599227 intergenic not near genes chrX 9599280 intergenic not near genes chrX_11_9595001 chrX_9595001 RAL-783 1538 chrX 9791864 9791888 chrX 9791961 9791985 7 97 2.5 1.5 2.0 2.3 121 chrX 9791864 intron CG32698 + chrX 9791924 intron CG32698 + chrX 9791985 intron CG32698 + chrX_7_9790001 chrX_9790001 RAL-783 1539 chrX 10138219 10138240 chrX 10145722 10145744 412 4 7504 2.0 0.5 1.2 1.8 7525 chrX 10138219 intron,intron RhoU +,CR44894 - chrX 10141982 intron,intron RhoU +,CR44894 - chrX 10145744 intron,intron RhoU +,CR44894 - chrX_4_10140001 chrX_10140001 RAL-783 1540 chrX 10150016 10150039 chrX 10150239 10150262 4 223 2.5 0.5 1.5 1.6 246 chrX 10150016 intron CR44894 - chrX 10150139 intron CR44894 - chrX 10150262 intron CR44894 - chrX_4_10150001 chrX_10150001 RAL-783 1541 chrX 10367188 10367208 chrX 10367297 10367317 9 109 2.0 3.0 2.5 2.6 129 chrX 10367188 exon CG32679 - chrX 10367252 intron CG32679 - chrX 10367317 intron CG32679 - chrX_9_10365001 chrX_10365001 RAL-783 1542 chrX 10428874 10428888 chrX 10428964 10428977 6 90 0.5 2.0 1.2 2.7 103 chrX 10428874 intron CG32683 - chrX 10428926 intron CG32683 - chrX 10428977 intron CG32683 - chrX_6_10425001 chrX_10425001 RAL-783 1543 chrX 10446686 10446712 chrX 10446768 10446794 4 82 2.0 0.5 1.2 1.8 108 chrX 10446686 intron CG32683 - chrX 10446740 intron CG32683 - chrX 10446794 intron CG32683 - chrX_4_10445001 chrX_10445001 RAL-783 1544 chrX 10519114 10519123 chrX 10519231 10519240 4 117 4.0 1.5 2.8 1.1 126 chrX 10519114 intron spri - chrX 10519177 intron spri - chrX 10519240 intron spri - chrX_4_10515001 chrX_10515001 RAL-783 1545 chrX 10550340 10550366 chrX 10550418 10550444 5 78 1.0 0.5 0.8 2.8 104 chrX 10550340 intron spri - chrX 10550392 intron spri - chrX 10550444 intron spri - chrX_5_10550001 chrX_10550001 RAL-783 1546 chrX 10550856 10550885 chrX 10552322 10552352 hobo 6 1466 2.0 1.0 1.5 2.4 1496 chrX 10550856 intron spri - chrX 10551604 intron spri - chrX 10552352 intron spri - chrX_6_10550001 chrX_10550001 RAL-783 1547 chrX 10686072 10686081 chrX 10691218 10691227 roo 4 5146 1.5 0.0 0.8 2.2 5155 chrX 10686072 intron X11Lbeta + chrX 10688650 intron X11Lbeta + chrX 10691227 intron X11Lbeta + chrX_4_10685001 chrX_10685001 RAL-783 1548 chrX 10694168 10694183 chrX 10694230 10694259 8 76 1.5 4.0 2.8 2.1 91 chrX 10694168 intron X11Lbeta + chrX 10694214 intron X11Lbeta + chrX 10694259 intron X11Lbeta + chrX_8_10690001 chrX_10690001 RAL-783 1549 chrX 10719125 10719148 chrX 10719209 10719232 5 84 0.0 2.0 1.0 2.5 107 chrX 10719125 intron CG32676 - chrX 10719178 intron CG32676 - chrX 10719232 intron CG32676 - chrX_5_10715001 chrX_10715001 RAL-783 1550 chrX 10772680 10772697 chrX 10772763 10772763 Tirant 5 79 2.0 4.5 3.2 1.2 83 chrX 10772680 intron CG15211 + chrX 10772722 intron CG15211 + chrX 10772763 intron CG15211 + chrX_5_10770001 chrX_10770001 RAL-783 1551 chrX 11069162 11069191 chrX 11069305 11069334 10 143 1.0 0.0 0.5 6.7 172 chrX 11069162 intergenic not near genes chrX 11069248 intergenic not near genes chrX 11069334 intergenic not near genes chrX_10_11065001 chrX_11065001 RAL-783 1552 chrX 11095997 11096027 chrX 11103099 11103129 HMS-Beagle 5 7102 0.5 2.5 1.5 2.0 7132 chrX 11095997 intergenic not near genes chrX 11099563 intergenic not near genes chrX 11103129 intron CG42249 + chrX_5_11095001 chrX_11095001 RAL-783 1553 chrX 11254169 11254200 chrX 11254280 11254311 4 111 1.5 2.0 1.8 1.4 142 chrX 11254169 intron CG44422 - chrX 11254240 intron CG44422 - chrX 11254311 intron CG44422 - chrX_4_11250001 chrX_11250001 RAL-783 1554 chrX 11291692 11291719 chrX 11291774 11291781 5 78 2.0 3.0 2.5 1.4 89 chrX 11291692 intron CG44422 - chrX 11291736 intron CG44422 - chrX 11291781 intron CG44422 - chrX_5_11290001 chrX_11290001 RAL-783 1555 chrX 11312060 11312085 chrX 11319413 11319437 Stalker2 4 7349 1.0 1.0 1.0 2.0 7377 chrX 11312060 intergenic not near genes chrX 11315748 intergenic not near genes chrX 11319437 intergenic not near genes chrX_4_11315001 chrX_11315001 RAL-783 1556 chrX 11633416 11633439 chrX 11640470 11640493 297 7 7054 0.5 3.0 1.8 2.5 7077 chrX 11633416 intron Ptp10D + chrX 11636954 intron Ptp10D + chrX 11640493 intron Ptp10D + chrX_7_11635001 chrX_11635001 RAL-783 1557 chrX 12069054 12069086 chrX 12069141 12069173 7 84 2.0 0.5 1.2 3.2 119 chrX 12069054 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069114 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX 12069173 intron,intron,3` UTR CR43960 +,Ten-a +,CR43961 - chrX_7_12065001 chrX_12065001 RAL-783 1558 chrX 12094035 12094065 chrX 12094125 12094157 5 91 1.5 2.0 1.8 1.8 122 chrX 12094035 intron,intron CR43960 +,Ten-a + chrX 12094096 intron,intron CR43960 +,Ten-a + chrX 12094157 intron,intron CR43960 +,Ten-a + chrX_5_12090001 chrX_12090001 RAL-783 1559 chrX 12176747 12176761 chrX 12176820 12176837 6 75 0.5 4.5 2.5 1.7 90 chrX 12176747 intron,3` UTR Ten-a +,CG1924 - chrX 12176792 intron,3` UTR Ten-a +,CG1924 - chrX 12176837 intron,3` UTR Ten-a +,CG1924 - chrX_6_12175001 chrX_12175001 RAL-783 1560 chrX 12272847 12272866 chrX 12272926 12272945 6 79 1.5 3.5 2.5 1.7 98 chrX 12272847 intron Ten-a + chrX 12272896 intron Ten-a + chrX 12272945 intron Ten-a + chrX_6_12270001 chrX_12270001 RAL-783 1561 chrX 12301982 12301988 chrX 12303269 12303294 X-element 4 1300 1.5 2.0 1.8 1.4 1312 chrX 12301982 intron Ten-a + chrX 12302638 intron Ten-a + chrX 12303294 intron Ten-a + chrX_4_12300001 chrX_12300001 RAL-783 1562 chrX 12350772 12350803 chrX 12350852 12350884 10 80 0.5 0.0 0.2 8.3 112 chrX 12350772 intergenic not near genes chrX 12350828 intergenic not near genes chrX 12350884 intergenic not near genes chrX_10_12350001 chrX_12350001 RAL-783 1563 chrX 12532651 12532662 chrX 12532791 12532804 4 143 1.5 0.0 0.8 2.2 153 chrX 12532651 intron CG43921 - chrX 12532728 intron CG43921 - chrX 12532804 intron CG43921 - chrX_4_12530001 chrX_12530001 RAL-783 1564 chrX 12752278 12752308 chrX 12752365 12752395 7 87 2.0 2.5 2.2 2.2 117 chrX 12752278 5` UTR CR44619 + chrX 12752336 5` UTR CR44619 + chrX 12752395 5` UTR CR44619 + chrX_7_12750001 chrX_12750001 RAL-783 1565 chrX 13146597 13146622 chrX 13146685 13146710 7 88 2.0 0.0 1.0 3.5 113 chrX 13146597 intron CG32645 + chrX 13146654 intron CG32645 + chrX 13146710 intron CG32645 + chrX_7_13145001 chrX_13145001 RAL-783 1566 chrX 13172353 13172378 chrX 13172426 13172454 6 75 2.5 2.0 2.2 1.9 101 chrX 13172353 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172454 intron CG34411 - chrX_6_13170001 chrX_13170001 RAL-783 1567 chrX 13236886 13236902 chrX 13236971 13236987 5 85 0.5 2.5 1.5 2.0 101 chrX 13236886 intron mew - chrX 13236936 intron mew - chrX 13236987 intron mew - chrX_5_13235001 chrX_13235001 RAL-783 1568 chrX 13374840 13374861 chrX 13374915 13374941 5 79 0.5 0.5 0.5 3.3 101 chrX 13374840 intron CG1640 + chrX 13374890 intron CG1640 + chrX 13374941 intron CG1640 + chrX_5_13370001 chrX_13370001 RAL-783 1569 chrX 13463649 13463677 chrX 13469226 13469254 mdg3 5 5577 1.0 2.0 1.5 2.0 5605 chrX 13463649 intron Neto + chrX 13466452 intron Neto + chrX 13469254 intron Neto + chrX_5_13465001 chrX_13465001 RAL-783 1570 chrX 13701844 13701866 chrX 13701921 13701946 7 79 0.0 1.5 0.8 3.9 102 chrX 13701844 intron,intron CG9940 -,NnaD + chrX 13701895 intron,intron CG9940 -,NnaD + chrX 13701946 intron,intron CG9940 -,NnaD + chrX_7_13700001 chrX_13700001 RAL-783 1571 chrX 13937981 13937998 chrX 13941252 13941269 I-element 8 3271 3.0 1.5 2.2 2.5 3288 chrX 13937981 intron mamo - chrX 13939625 intron mamo - chrX 13941269 intron mamo - chrX_8_13935001 chrX_13935001 RAL-783 1572 chrX 13943274 13943303 chrX 13943365 13943394 7 89 0.0 1.5 0.8 3.9 120 chrX 13943274 intron mamo - chrX 13943334 intron mamo - chrX 13943394 intron mamo - chrX_7_13940001 chrX_13940001 RAL-783 1573 chrX 14105035 14105055 chrX 14114180 14114203 roo 9 9148 2.5 2.5 2.5 2.6 9168 chrX 14105035 intergenic not near genes chrX 14109619 intergenic not near genes chrX 14114203 5` UTR CR44657 + chrX_9_14105001 chrX_14105001 RAL-783 1574 chrX 14131494 14131512 chrX 14131575 14131593 8 78 1.5 5.0 3.2 1.9 99 chrX 14131494 intergenic not near genes chrX 14131544 intergenic not near genes chrX 14131593 intergenic not near genes chrX_8_14130001 chrX_14130001 RAL-783 1575 chrX 14157599 14157613 chrX 14163256 14163270 297 5 5657 0.5 2.0 1.2 2.3 5671 chrX 14157599 intergenic not near genes chrX 14160434 intergenic not near genes chrX 14163270 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-783 1576 chrX 14209465 14209488 chrX 14209556 14209579 4 90 1.0 4.0 2.5 1.1 114 chrX 14209465 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209522 intron,intron l(1)G0007 +,l(1)G0469 - chrX 14209579 intron,intron l(1)G0007 +,l(1)G0469 - chrX_4_14205001 chrX_14205001 RAL-783 1577 chrX 14312776 14312804 chrX 14312855 14312880 4 79 1.0 1.0 1.0 2.0 104 chrX 14312776 intergenic not near genes chrX 14312828 intergenic not near genes chrX 14312880 intergenic not near genes chrX_4_14310001 chrX_14310001 RAL-783 1578 chrX 14494498 14494522 chrX 14494668 14494693 7 171 1.0 1.5 1.2 3.2 195 chrX 14494498 intergenic not near genes chrX 14494596 intergenic not near genes chrX 14494693 intergenic not near genes chrX_7_14490001 chrX_14490001 RAL-783 1579 chrX 14508457 14508481 chrX 14508593 14508618 5 135 2.0 0.5 1.2 2.3 161 chrX 14508457 intergenic not near genes chrX 14508538 intergenic not near genes chrX 14508618 intergenic not near genes chrX_5_14505001 chrX_14505001 RAL-783 1580 chrX 14589689 14589708 chrX 14589930 14589949 pogo 4 241 0.5 1.5 1.0 2.0 260 chrX 14589689 intron CG9413 - chrX 14589819 intron CG9413 - chrX 14589949 intron CG9413 - chrX_4_14585001 chrX_14585001 RAL-783 1581 chrX 14636461 14636491 chrX 14641901 14641932 I-element 10 5440 4.0 3.5 3.8 2.1 5471 chrX 14636461 intron NetA - chrX 14639196 intron NetA - chrX 14641932 intron NetA - chrX_10_14635001 chrX_14635001 RAL-783 1582 chrX 14936868 14936887 chrX 14946123 14946144 roo 5 9257 0.5 1.5 1.0 2.5 9276 chrX 14936868 intron pdgy - chrX 14941506 intron pdgy - chrX 14946144 intron pdgy - chrX_5_14940001 chrX_14940001 RAL-783 1583 chrX 15046037 15046064 chrX 15046121 15046148 8 83 5.0 1.5 3.2 1.9 111 chrX 15046037 intron,intron hiw -,CG5541 + chrX 15046092 intron,intron hiw -,CG5541 + chrX 15046148 intron,intron hiw -,CG5541 + chrX_8_15045001 chrX_15045001 RAL-783 1584 chrX 15413049 15413066 chrX 15417351 15417368 Juan 5 4302 5.5 1.0 3.2 1.2 4319 chrX 15413049 intron Cngl - chrX 15415208 intron Cngl - chrX 15417368 intron Cngl - chrX_5_15415001 chrX_15415001 RAL-783 1585 chrX 15681397 15681425 chrX 15681478 15681506 5 82 0.5 0.0 0.2 4.2 109 chrX 15681397 intergenic not near genes chrX 15681452 intergenic not near genes chrX 15681506 intergenic not near genes chrX_5_15680001 chrX_15680001 RAL-783 1586 chrX 16492646 16492660 chrX 16498223 16498237 mdg3 7 5577 3.0 1.0 2.0 2.3 5591 chrX 16492646 intron para - chrX 16495442 intron para - chrX 16498237 intron para - chrX_7_16495001 chrX_16495001 RAL-783 1587 chrX 16623489 16623503 chrX 16623575 16623589 5 86 3.0 0.0 1.5 2.0 100 chrX 16623489 intergenic not near genes chrX 16623539 intergenic Rok - chrX 16623589 intergenic Rok - chrX_5_16620001 chrX_16620001 RAL-783 1588 chrX 16944075 16944101 chrX 16944352 16944378 4 277 5.5 7.5 6.5 0.5 303 chrX 16944075 intron RhoGAP15B + chrX 16944226 intron RhoGAP15B + chrX 16944378 intron RhoGAP15B + chrX_4_16940001 chrX_16940001 RAL-783 1589 chrX 16951322 16951351 chrX 16951402 16951412 4 74 3.0 2.0 2.5 1.1 90 chrX 16951322 exon RhoGAP15B + chrX 16951367 exon RhoGAP15B + chrX 16951412 exon RhoGAP15B + chrX_4_16950001 chrX_16950001 RAL-783 1590 chrX 17011734 17011998 chrX 17011853 17012081 8 103 5.0 2.0 3.5 1.8 347 chrX 17011734 intron CG45002 - chrX 17011908 intron CG45002 - chrX 17012081 intron CG45002 - chrX_8_17010001 chrX_17010001 RAL-783 1591 chrX 17061577 17061600 chrX 17061700 17061721 7 123 1.0 4.0 2.5 2.0 144 chrX 17061577 intron CG45002 - chrX 17061649 intron CG45002 - chrX 17061721 intron CG45002 - chrX_7_17060001 chrX_17060001 RAL-783 1592 chrX 17111235 17111247 chrX 17111357 17111369 4 121 2.5 2.0 2.2 1.2 134 chrX 17111235 intron CG5004 + chrX 17111302 intron CG5004 + chrX 17111369 intron CG5004 + chrX_4_17110001 chrX_17110001 RAL-783 1593 chrX 17234261 17234273 chrX 17234355 17234367 4 94 1.5 0.0 0.8 2.2 106 chrX 17234261 intron f + chrX 17234314 intron f + chrX 17234367 intron f + chrX_4_17230001 chrX_17230001 RAL-783 1594 chrX 17282886 17282909 chrX 17282959 17282985 15 76 3.0 0.5 1.8 5.4 99 chrX 17282886 intron CG5445 + chrX 17282936 5` UTR CG5445 + chrX 17282985 intron CG5445 + chrX_15_17280001 chrX_17280001 RAL-783 1595 chrX 17352591 17352619 chrX 17352694 17352722 8 103 0.0 1.0 0.5 5.3 131 chrX 17352591 intergenic not near genes chrX 17352656 intergenic not near genes chrX 17352722 intergenic not near genes chrX_8_17350001 chrX_17350001 RAL-783 1596 chrX 17556951 17556968 chrX 17557449 17557455 mdg1 4 495 3.0 5.0 4.0 0.8 504 chrX 17556951 intron CG43658 - chrX 17557203 intron CG43658 - chrX 17557455 intron CG43658 - chrX_4_17555001 chrX_17555001 RAL-783 1597 chrX 18194080 18194101 chrX 18194615 18194636 BS 7 535 2.5 3.0 2.8 1.8 556 chrX 18194080 intron Frq2 + chrX 18194358 intron Frq2 + chrX 18194636 intron Frq2 + chrX_7_18190001 chrX_18190001 RAL-783 1598 chrX 18236765 18236786 chrX 18236887 18236908 9 121 0.5 4.5 2.5 2.6 143 chrX 18236765 intergenic not near genes chrX 18236836 intergenic not near genes chrX 18236908 intergenic not near genes chrX_9_18235001 chrX_18235001 RAL-783 1599 chrX 18320487 18320494 chrX 18320619 18320624 4 131 1.5 1.5 1.5 1.6 137 chrX 18320487 intron CG6023 - chrX 18320556 intron CG6023 - chrX 18320624 intron CG6023 - chrX_4_18320001 chrX_18320001 RAL-783 1600 chrX 18429495 18429525 chrX 18434806 18434836 Transpac 4 5311 2.5 0.5 1.5 1.6 5341 chrX 18429495 intergenic not near genes chrX 18432166 intergenic not near genes chrX 18434836 intergenic not near genes chrX_4_18430001 chrX_18430001 RAL-783 1601 chrX 18490046 18490056 chrX 18490201 18490211 7 155 3.0 4.0 3.5 1.6 165 chrX 18490046 intergenic CG15046 - chrX 18490128 intergenic not near genes chrX 18490211 intergenic not near genes chrX_7_18490001 chrX_18490001 RAL-783 1602 chrX 18558778 18558807 chrX 18558860 18558889 6 82 1.0 2.0 1.5 2.4 111 chrX 18558778 intron Bx + chrX 18558834 intron Bx + chrX 18558889 intron Bx + chrX_6_18555001 chrX_18555001 RAL-783 1603 chrX 18645018 18645049 chrX 18645116 18645147 7 97 3.5 2.0 2.8 1.8 129 chrX 18645018 intron Rip11 - chrX 18645082 intron Rip11 - chrX 18645147 intron Rip11 - chrX_7_18645001 chrX_18645001 RAL-783 1604 chrX 18749870 18749896 chrX 18749954 18749980 5 84 0.0 1.5 0.8 2.8 110 chrX 18749870 intergenic not near genes chrX 18749925 intergenic not near genes chrX 18749980 intergenic not near genes chrX_5_18745001 chrX_18745001 RAL-783 1605 chrX 18813840 18813852 chrX 18813923 18813934 5 81 2.5 4.0 3.2 1.2 94 chrX 18813840 intron CG42450 + chrX 18813887 intron CG42450 + chrX 18813934 intron CG42450 + chrX_5_18810001 chrX_18810001 RAL-783 1606 chrX 18896517 18896543 chrX 18896628 18896654 5 111 1.0 3.0 2.0 1.7 137 chrX 18896517 3` UTR CG7349 + chrX 18896586 intergenic CG7349 + chrX 18896654 intergenic CG7349 + chrX_5_18895001 chrX_18895001 RAL-783 1607 chrX 18896910 18896933 chrX 18896987 18897009 6 77 1.5 2.0 1.8 2.1 99 chrX 18896910 intergenic CG7349 + chrX 18896960 intergenic CG7349 + chrX 18897009 intergenic CG7349 + chrX_6_18895001 chrX_18895001 RAL-783 1608 chrX 18947500 18947535 chrX 18947593 18947628 6 90 2.5 1.0 1.8 2.1 128 chrX 18947500 intron CG43759 + chrX 18947564 intron CG43759 + chrX 18947628 intron CG43759 + chrX_6_18945001 chrX_18945001 RAL-783 1609 chrX 19125693 19125713 chrX 19125821 19125842 10 128 1.0 2.5 1.8 3.6 149 chrX 19125693 intron tgy - chrX 19125768 intron tgy - chrX 19125842 intron tgy - chrX_10_19125001 chrX_19125001 RAL-783 1610 chrX 19136553 19136585 chrX 19143474 19143504 412 4 6919 0.5 2.0 1.2 1.8 6951 chrX 19136553 intergenic not near genes chrX 19140028 intergenic not near genes chrX 19143504 3` UTR RhoGAP18B - chrX_4_19140001 chrX_19140001 RAL-783 1611 chrX 19593947 19593968 chrX 19594031 19594053 7 85 3.0 2.0 2.5 2.0 106 chrX 19593947 exon CG14205 + chrX 19594000 intron CG14205 + chrX 19594053 intron CG14205 + chrX_7_19590001 chrX_19590001 RAL-783 1612 chrX 19884094 19884118 chrX 19884170 19884178 5 72 1.0 3.5 2.2 1.6 84 chrX 19884094 intron Hers + chrX 19884136 intron Hers + chrX 19884178 intron Hers + chrX_5_19880001 chrX_19880001 RAL-783 1613 chrX 19983872 19983899 chrX 19983952 19983979 4 80 1.0 0.0 0.5 2.7 107 chrX 19983872 intergenic not near genes chrX 19983926 intergenic not near genes chrX 19983979 intergenic not near genes chrX_4_19980001 chrX_19980001 RAL-783 1614 chrX 20041538 20041563 chrX 20041618 20041642 5 80 1.5 1.0 1.2 2.3 104 chrX 20041538 intron Dop2R - chrX 20041590 intron Dop2R - chrX 20041642 intron Dop2R - chrX_5_20040001 chrX_20040001 RAL-783 1615 chrX 20312886 20312911 chrX 20312964 20312989 7 78 3.5 2.5 3.0 1.8 103 chrX 20312886 intron CG1504 - chrX 20312938 intron CG1504 - chrX 20312989 intron CG1504 - chrX_7_20310001 chrX_20310001 RAL-783 1616 chrX 20358842 20358845 chrX 20358925 20358928 4 84 2.5 2.0 2.2 1.2 86 chrX 20358842 intergenic not near genes chrX 20358885 intergenic not near genes chrX 20358928 intergenic not near genes chrX_4_20355001 chrX_20355001 RAL-783 1617 chrX 20377325 20377345 chrX 20378790 20378812 hobo 5 1466 5.0 4.0 4.5 0.9 1487 chrX 20377325 intergenic not near genes chrX 20378068 intergenic not near genes chrX 20378812 intergenic not near genes chrX_5_20375001 chrX_20375001 RAL-783 1618 chrX 20443173 20443182 chrX 20443248 20443258 4 76 4.5 2.5 3.5 0.9 85 chrX 20443173 exon CG1695 + chrX 20443216 intron CG1695 + chrX 20443258 intron CG1695 + chrX_4_20440001 chrX_20440001 RAL-783 1619 chrX 20578074 20578111 chrX 20578153 20578190 6 79 0.5 1.5 1.0 3.0 116 chrX 20578074 intergenic not near genes chrX 20578132 intergenic not near genes chrX 20578190 intergenic not near genes chrX_6_20575001 chrX_20575001 RAL-783 1620 chrX 20780226 20780237 chrX 20780451 20780462 4 225 2.0 3.5 2.8 1.1 236 chrX 20780226 intron,3` UTR shakB -,CG32507 - chrX 20780344 intron,3` UTR shakB -,CG32507 - chrX 20780462 intron,3` UTR shakB -,CG32507 - chrX_4_20780001 chrX_20780001 RAL-783 1621 chrX 20940720 20940755 chrX 20942189 20942220 hobo 9 1468 4.0 3.5 3.8 1.9 1500 chrX 20940720 intergenic not near genes chrX 20941470 intergenic not near genes chrX 20942220 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-783 1622 chrX 20981031 20981057 chrX 20981134 20981160 5 103 0.5 1.0 0.8 2.8 129 chrX 20981031 intergenic not near genes chrX 20981096 intergenic not near genes chrX 20981160 intergenic not near genes chrX_5_20980001 chrX_20980001 RAL-783 1623 chrX 21042560 21042588 chrX 21045345 21045377 9 2786 17.0 18.0 17.5 0.5 2817 chrX 21042560 exon Mgstl + chrX 21043968 exon,3` UTR Mgstl +,CR44431 - chrX 21045377 intron Cbs + chrX_9_21040001 chrX_21040001 RAL-783 1624 chrX 21086131 21086159 chrX 21087160 21087188 jockey 5 1029 3.5 1.5 2.5 1.4 1057 chrX 21086131 intergenic not near genes chrX 21086660 intergenic not near genes chrX 21087188 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-783 1625 chrX 21088063 21088069 chrX 21088185 21088199 5 130 1.0 3.0 2.0 1.7 136 chrX 21088063 intergenic not near genes chrX 21088131 intergenic not near genes chrX 21088199 intergenic not near genes chrX_5_21085001 chrX_21085001 RAL-783 1626 chrX 21089146 21089175 chrX 21089240 21089269 8 94 2.5 3.0 2.8 2.1 123 chrX 21089146 intergenic not near genes chrX 21089208 intergenic not near genes chrX 21089269 intergenic not near genes chrX_8_21085001 chrX_21085001 RAL-783 1627 chrX 21221301 21221308 chrX 21221431 21221438 6 130 5.0 2.5 3.8 1.2 137 chrX 21221301 intron CG32521 - chrX 21221370 intron CG32521 - chrX 21221438 intron CG32521 - chrX_6_21220001 chrX_21220001 RAL-783 1628 chrX 21419710 21419734 chrX 21419799 21419822 5 87 1.5 0.5 1.0 2.5 112 chrX 21419710 intergenic not near genes chrX 21419766 intergenic not near genes chrX 21419822 intergenic not near genes chrX_5_21415001 chrX_21415001 RAL-783 1629 chrX 21458694 21458724 chrX 21464130 21464160 Ivk 5 5436 0.0 0.5 0.2 4.2 5466 chrX 21458694 intergenic not near genes chrX 21461427 intergenic not near genes chrX 21464160 intergenic not near genes chrX_5_21460001 chrX_21460001 RAL-783 1630 chrX 21500563 21500585 chrX 21500764 21500786 4 201 0.0 0.5 0.2 3.3 223 chrX 21500563 intron CR45082 - chrX 21500674 intron CR45082 - chrX 21500786 intron CR45082 - chrX_4_21500001 chrX_21500001 RAL-783 1631 chrX 21515619 21515639 chrX 21516121 21516133 4 498 1.5 1.0 1.2 1.8 514 chrX 21515619 intron CR45082 - chrX 21515876 intron CR45082 - chrX 21516133 intron CR45082 - chrX_4_21515001 chrX_21515001 RAL-783 1632 chrX 21565413 21565442 chrX 21565490 21565520 7 78 2.0 1.0 1.5 2.8 107 chrX 21565413 intergenic not near genes chrX 21565466 intergenic not near genes chrX 21565520 intergenic not near genes chrX_7_21565001 chrX_21565001 RAL-783 1633 chrX 22478878 22478896 chrX 22479011 22479029 5 132 0.0 2.5 1.2 2.3 151 chrX 22478878 intron CG12576 - chrX 22478954 intron CG12576 - chrX 22479029 intron CG12576 - chrX_5_22475001 chrX_22475001 RAL-783 1634 chrX 22660568 22660600 chrX 22660650 22660651 4 75 0.5 0.5 0.5 2.7 83 chrX 22660568 intron CR44997 + chrX 22660610 intron CR44997 + chrX 22660651 intron CR44997 + chrX_4_22660001 chrX_22660001 RAL-783 1635 chrX 22771517 22771533 chrX 22774808 22774824 297 4 3290 2.0 2.5 2.2 1.2 3307 chrX 22771517 intron CR44997 + chrX 22773170 intron CR44997 + chrX 22774824 intron CR44997 + chrX_4_22770001 chrX_22770001 RAL-783 1636 chrX 22992396 22992423 chrX 22992526 22992554 8 131 2.5 1.5 2.0 2.7 158 chrX 22992396 intron,intron stnA -,stnB - chrX 22992475 intron,intron stnA -,stnB - chrX 22992554 intron,intron stnA -,stnB - chrX_8_22990001 chrX_22990001 RAL-783 1637 chrX 22996329 22996338 chrX 23003560 23003570 roo 4 7232 2.5 2.0 2.2 1.2 7241 chrX 22996329 intron,intron stnA -,stnB - chrX 22999950 intron,intron stnA -,stnB - chrX 23003570 intron,intron stnA -,stnB - chrX_4_22995001 chrX_22995001 RAL-783 1638 chrY 975795 975818 chrY 975873 975925 5 84 97.5 111.0 104.2 0.0 130 chrY 975795 intergenic not near genes chrY 975860 intergenic not near genes chrY 975925 intergenic not near genes chrY_5_975001 chrY_975001 RAL-783