SV# Chr_5p Chr_coord_5p_start Chr_coord_5p_end Chr_3p Chr_coord_3p_start Chr_coord_3p_end repName Reads_collapsed avg_del_len RefGen_3prime Refgen_5prime RefGen_Avg Coverage_Ratio size Chr_5p Chr_coord_5p classification_5p comment_5p Chr_mid Chr_coord_mid classification_mid comment_mid Chr_3p Chr_coord_3p classification_3p comment_3p depletion_code loci_code libname 1 chr2L 47464 47491 chr2L 52569 52596 jockey 8 5105 3.5 2.5 3.0 2.0 5132 chr2L 47464 intron Cda5 - chr2L 50030 intron Cda5 - chr2L 52596 intron Cda5 - chr2L_8_50001 chr2L_50001 RAL-776 2 chr2L 89359 89385 chr2L 89764 89779 7 405 2.5 3.5 3.0 1.8 420 chr2L 89359 intergenic not near genes chr2L 89569 intergenic not near genes chr2L 89779 intergenic not near genes chr2L_7_85001 chr2L_85001 RAL-776 3 chr2L 325133 325153 chr2L 325209 325230 11 76 6.5 4.0 5.2 1.8 97 chr2L 325133 intron Plc21C + chr2L 325182 intron Plc21C + chr2L 325230 intron Plc21C + chr2L_11_325001 chr2L_325001 RAL-776 4 chr2L 347891 347918 chr2L 355389 355417 blood 11 7499 1.0 0.5 0.8 6.1 7526 chr2L 347891 3` UTR Plc21C + chr2L 351654 intron Plc21C + chr2L 355417 3` UTR Plc21C + chr2L_11_350001 chr2L_350001 RAL-776 5 chr2L 590334 590341 chr2L 590424 590433 5 91 3.0 1.5 2.2 1.6 99 chr2L 590334 intron Gsc - chr2L 590384 intron Gsc - chr2L 590433 intron Gsc - chr2L_5_590001 chr2L_590001 RAL-776 6 chr2L 609292 609331 chr2L 609408 609437 8 110 5.5 4.5 5.0 1.3 145 chr2L 609292 intergenic CR43649 - chr2L 609364 intergenic CR43649 - chr2L 609437 intergenic CR43649 - chr2L_8_605001 chr2L_605001 RAL-776 7 chr2L 748207 748236 chr2L 748285 748313 13 78 2.0 3.0 2.5 3.7 106 chr2L 748207 intergenic not near genes chr2L 748260 intergenic not near genes chr2L 748313 intergenic not near genes chr2L_13_745001 chr2L_745001 RAL-776 8 chr2L 764554 764576 chr2L 764654 764676 4 100 3.5 1.0 2.2 1.2 122 chr2L 764554 intergenic not near genes chr2L 764615 intergenic not near genes chr2L 764676 intergenic not near genes chr2L_4_760001 chr2L_760001 RAL-776 9 chr2L 795264 795281 chr2L 795372 795391 6 108 2.0 0.0 1.0 3.0 127 chr2L 795264 intergenic not near genes chr2L 795328 intergenic not near genes chr2L 795391 intergenic not near genes chr2L_6_795001 chr2L_795001 RAL-776 10 chr2L 826901 826918 chr2L 826980 826997 7 79 7.5 4.5 6.0 1.0 96 chr2L 826901 intron dock + chr2L 826949 intron dock + chr2L 826997 intron dock + chr2L_7_825001 chr2L_825001 RAL-776 11 chr2L 877840 877866 chr2L 877921 877922 9 78 3.0 3.5 3.2 2.1 82 chr2L 877840 3` UTR,exon CG15824 -,ninaA + chr2L 877881 3` UTR,intron CG15824 -,ninaA + chr2L 877922 3` UTR,intron CG15824 -,ninaA + chr2L_9_875001 chr2L_875001 RAL-776 12 chr2L 941746 941769 chr2L 941872 941894 6 126 4.0 3.0 3.5 1.3 148 chr2L 941746 intron CG4341 + chr2L 941820 intron CG4341 + chr2L 941894 intron CG4341 + chr2L_6_940001 chr2L_940001 RAL-776 13 chr2L 964556 964574 chr2L 964640 964658 12 84 2.5 5.0 3.8 2.5 102 chr2L 964556 intergenic not near genes chr2L 964607 intergenic not near genes chr2L 964658 intergenic not near genes chr2L_12_960001 chr2L_960001 RAL-776 14 chr2L 976893 976911 chr2L 984529 984547 roo 8 7636 1.5 0.5 1.0 4.0 7654 chr2L 976893 intergenic not near genes chr2L 980720 intergenic not near genes chr2L 984547 intergenic not near genes chr2L_8_980001 chr2L_980001 RAL-776 15 chr2L 1074060 1074084 chr2L 1074140 1074156 13 78 6.0 3.0 4.5 2.4 96 chr2L 1074060 intron S - chr2L 1074108 intron S - chr2L 1074156 intron S - chr2L_13_1070001 chr2L_1070001 RAL-776 16 chr2L 1074085 1074094 chr2L 1074139 1074174 4 74 3.5 2.5 3.0 1.0 89 chr2L 1074085 intron S - chr2L 1074130 intron S - chr2L 1074174 intron S - chr2L_4_1070001 chr2L_1070001 RAL-776 17 chr2L 1121136 1121162 chr2L 1121220 1121249 9 82 3.0 3.5 3.2 2.1 113 chr2L 1121136 intron Pino - chr2L 1121192 intron Pino - chr2L 1121249 intron Pino - chr2L_9_1120001 chr2L_1120001 RAL-776 18 chr2L 1156862 1156882 chr2L 1156963 1156971 8 102 3.5 2.0 2.8 2.1 109 chr2L 1156862 intron capt - chr2L 1156916 intron capt - chr2L 1156971 intron capt - chr2L_8_1155001 chr2L_1155001 RAL-776 19 chr2L 1220127 1220161 chr2L 1227593 1227627 blood 11 7465 2.5 3.5 3.0 2.8 7500 chr2L 1220127 intron CG42329 + chr2L 1223877 intron CG42329 + chr2L 1227627 intron CG42329 + chr2L_11_1220001 chr2L_1220001 RAL-776 20 chr2L 1261137 1261160 chr2L 1261219 1261242 4 82 0.0 0.0 0.0 4.0 105 chr2L 1261137 intron robo3 + chr2L 1261190 intron robo3 + chr2L 1261242 intron robo3 + chr2L_4_1260001 chr2L_1260001 RAL-776 21 chr2L 1503433 1503460 chr2L 1503511 1503538 7 78 2.5 3.5 3.0 1.8 105 chr2L 1503433 intron CR44064 + chr2L 1503486 intron CR44064 + chr2L 1503538 intron CR44064 + chr2L_7_1500001 chr2L_1500001 RAL-776 22 chr2L 1512637 1512664 chr2L 1512896 1512923 7 258 3.0 2.5 2.8 1.8 286 chr2L 1512637 intergenic not near genes chr2L 1512780 intergenic not near genes chr2L 1512923 intergenic not near genes chr2L_7_1510001 chr2L_1510001 RAL-776 23 chr2L 1570688 1570717 chr2L 1573560 1573589 F-element 7 2872 2.5 3.5 3.0 1.8 2901 chr2L 1570688 intron haf + chr2L 1572138 intron haf + chr2L 1573589 intron haf + chr2L_7_1570001 chr2L_1570001 RAL-776 24 chr2L 1647958 1647979 chr2L 1648110 1648132 5 152 2.0 5.0 3.5 1.1 174 chr2L 1647958 intergenic not near genes chr2L 1648045 intergenic not near genes chr2L 1648132 intergenic not near genes chr2L_5_1645001 chr2L_1645001 RAL-776 25 chr2L 1678957 1679007 chr2L 1686440 1686472 blood 4 7470 0.0 1.5 0.8 2.2 7515 chr2L 1678957 intron chinmo + chr2L 1682714 intron chinmo + chr2L 1686472 intron chinmo + chr2L_4_1680001 chr2L_1680001 RAL-776 26 chr2L 1711360 1711387 chr2L 1711680 1711685 mdg3 8 320 4.0 5.5 4.8 1.4 325 chr2L 1711360 3` UTR,3` UTR mRpL48 +,frtz - chr2L 1711522 3` UTR frtz - chr2L 1711685 3` UTR frtz - chr2L_8_1710001 chr2L_1710001 RAL-776 27 chr2L 1721823 1721850 chr2L 1721907 1721934 8 81 0.5 3.0 1.8 2.9 111 chr2L 1721823 intron Rim2 - chr2L 1721878 intron Rim2 - chr2L 1721934 intron Rim2 - chr2L_8_1720001 chr2L_1720001 RAL-776 28 chr2L 1883436 1883446 chr2L 1884016 1884026 5 580 2.5 9.0 5.8 0.7 590 chr2L 1883436 intron CG15358 - chr2L 1883731 intron CG15358 - chr2L 1884026 exon CG15358 - chr2L_5_1880001 chr2L_1880001 RAL-776 29 chr2L 1880460 1880461 chr2L 1884652 1884673 8 4195 24.0 23.0 23.5 0.3 4213 chr2L 1880460 5` UTR CG31663 - chr2L 1882566 exon CG15358 - chr2L 1884673 5` UTR CG7337 + chr2L_8_1880001 chr2L_1880001 RAL-776 30 chr2L 1880457 1880490 chr2L 1884674 1884682 9 4200 25.0 20.5 22.8 0.4 4225 chr2L 1880457 5` UTR CG31663 - chr2L 1882570 exon CG15358 - chr2L 1884682 5` UTR CG7337 + chr2L_9_1880001 chr2L_1880001 RAL-776 31 chr2L 2100382 2100402 chr2L 2109533 2109543 roo 7 9148 5.5 5.0 5.2 1.1 9161 chr2L 2100382 intron dpr3 - chr2L 2104962 intron dpr3 - chr2L 2109543 intron dpr3 - chr2L_7_2100001 chr2L_2100001 RAL-776 32 chr2L 2112131 2112137 chr2L 2119777 2119797 opus 4 7656 0.5 4.5 2.5 1.1 7666 chr2L 2112131 intergenic not near genes chr2L 2115964 intergenic not near genes chr2L 2119797 intergenic not near genes chr2L_4_2115001 chr2L_2115001 RAL-776 33 chr2L 2262310 2262335 chr2L 2262387 2262411 5 77 2.0 0.0 1.0 2.5 101 chr2L 2262310 intergenic not near genes chr2L 2262360 intergenic not near genes chr2L 2262411 intergenic not near genes chr2L_5_2260001 chr2L_2260001 RAL-776 34 chr2L 2294043 2294066 chr2L 2299248 2299266 copia 4 5201 2.5 4.5 3.5 0.9 5223 chr2L 2294043 intergenic not near genes chr2L 2296654 intergenic not near genes chr2L 2299266 intergenic not near genes chr2L_4_2295001 chr2L_2295001 RAL-776 35 chr2L 2299329 2299359 chr2L 2299407 2299437 11 77 3.5 4.5 4.0 2.2 108 chr2L 2299329 intergenic not near genes chr2L 2299383 intergenic not near genes chr2L 2299437 intergenic not near genes chr2L_11_2295001 chr2L_2295001 RAL-776 36 chr2L 2372366 2372367 chr2L 2372452 2372453 5 86 5.0 4.0 4.5 0.9 87 chr2L 2372366 intergenic CG3609 - chr2L 2372410 intergenic CG3609 - chr2L 2372453 intergenic CG3609 - chr2L_5_2370001 chr2L_2370001 RAL-776 37 chr2L 2503723 2503730 chr2L 2504498 2504509 4 777 6.0 3.0 4.5 0.7 786 chr2L 2503723 intergenic not near genes chr2L 2504116 intergenic not near genes chr2L 2504509 intergenic not near genes chr2L_4_2500001 chr2L_2500001 RAL-776 38 chr2L 2698865 2698894 chr2L 2698952 2698981 6 87 0.5 0.5 0.5 4.0 116 chr2L 2698865 intron CG31690 + chr2L 2698923 intron CG31690 + chr2L 2698981 intron CG31690 + chr2L_6_2695001 chr2L_2695001 RAL-776 39 chr2L 2800611 2800618 chr2L 2800694 2800700 4 83 0.0 0.5 0.2 3.3 89 chr2L 2800611 intergenic not near genes chr2L 2800656 intergenic not near genes chr2L 2800700 intergenic not near genes chr2L_4_2800001 chr2L_2800001 RAL-776 40 chr2L 2864343 2864370 chr2L 2864604 2864630 7 261 3.5 0.0 1.8 2.5 287 chr2L 2864343 intron CG2991 + chr2L 2864486 intron CG2991 + chr2L 2864630 intron CG2991 + chr2L_7_2860001 chr2L_2860001 RAL-776 41 chr2L 2909901 2909931 chr2L 2909985 2910014 6 81 2.5 3.5 3.0 1.5 113 chr2L 2909901 intron lilli + chr2L 2909958 intron lilli + chr2L 2910014 intron lilli + chr2L_6_2905001 chr2L_2905001 RAL-776 42 chr2L 2938979 2938994 chr2L 2939393 2939408 4 414 1.0 6.5 3.8 0.8 429 chr2L 2938979 intron lilli + chr2L 2939194 intron lilli + chr2L 2939408 intron lilli + chr2L_4_2935001 chr2L_2935001 RAL-776 43 chr2L 3008913 3008938 chr2L 3009022 3009047 5 109 3.5 3.5 3.5 1.1 134 chr2L 3008913 intron CG17265 + chr2L 3008980 intron CG17265 + chr2L 3009047 intron CG17265 + chr2L_5_3005001 chr2L_3005001 RAL-776 44 chr2L 3073039 3073065 chr2L 3078242 3078268 copia 11 5203 2.5 6.5 4.5 2.0 5229 chr2L 3073039 intron toc - chr2L 3075654 intron toc - chr2L 3078268 intron toc - chr2L_11_3075001 chr2L_3075001 RAL-776 45 chr2L 3108873 3108892 chr2L 3108950 3108969 7 76 2.5 0.5 1.5 2.8 96 chr2L 3108873 intron toc - chr2L 3108921 intron toc - chr2L 3108969 intron toc - chr2L_7_3105001 chr2L_3105001 RAL-776 46 chr2L 3251497 3251526 chr2L 3259062 3259090 springer 5 7565 2.0 5.5 3.8 1.0 7593 chr2L 3251497 intergenic not near genes chr2L 3255294 intergenic not near genes chr2L 3259090 intergenic not near genes chr2L_5_3255001 chr2L_3255001 RAL-776 47 chr2L 3291241 3291270 chr2L 3291321 3291350 6 80 2.0 5.5 3.8 1.2 109 chr2L 3291241 intergenic CG9664 - chr2L 3291296 3` UTR CG9664 - chr2L 3291350 3` UTR CG9664 - chr2L_6_3290001 chr2L_3290001 RAL-776 48 chr2L 3323262 3323282 chr2L 3323364 3323389 9 105 4.0 3.0 3.5 2.0 127 chr2L 3323262 intergenic CG8837 + chr2L 3323326 intergenic CG8837 + chr2L 3323389 intergenic CG8837 + chr2L_9_3320001 chr2L_3320001 RAL-776 49 chr2L 3395031 3395046 chr2L 3395113 3395128 4 81 6.0 5.0 5.5 0.6 97 chr2L 3395031 intergenic not near genes chr2L 3395080 intergenic not near genes chr2L 3395128 intergenic not near genes chr2L_4_3395001 chr2L_3395001 RAL-776 50 chr2L 3649796 3649820 chr2L 3654999 3655023 copia 6 5203 1.5 7.0 4.2 1.2 5227 chr2L 3649796 intron for - chr2L 3652410 intron for - chr2L 3655023 intron for - chr2L_6_3650001 chr2L_3650001 RAL-776 51 chr2L 3819046 3819056 chr2L 3819128 3819138 6 82 3.5 0.5 2.0 2.0 92 chr2L 3819046 intergenic not near genes chr2L 3819092 intergenic not near genes chr2L 3819138 intergenic not near genes chr2L_6_3815001 chr2L_3815001 RAL-776 52 chr2L 3831852 3831862 chr2L 3831933 3831943 4 79 4.0 8.0 6.0 0.6 91 chr2L 3831852 intergenic not near genes chr2L 3831898 intergenic not near genes chr2L 3831943 intergenic not near genes chr2L_4_3830001 chr2L_3830001 RAL-776 53 chr2L 3850149 3850176 chr2L 3850235 3850261 8 85 2.0 3.5 2.8 2.1 112 chr2L 3850149 intergenic not near genes chr2L 3850205 intergenic not near genes chr2L 3850261 intergenic not near genes chr2L_8_3850001 chr2L_3850001 RAL-776 54 chr2L 3879282 3879309 chr2L 3879500 3879527 7 216 2.5 3.0 2.8 1.8 245 chr2L 3879282 intron capu - chr2L 3879404 intron capu - chr2L 3879527 intron capu - chr2L_7_3875001 chr2L_3875001 RAL-776 55 chr2L 3944964 3944988 chr2L 3945071 3945095 4 107 2.0 2.0 2.0 1.3 131 chr2L 3944964 intron fred - chr2L 3945030 intron fred - chr2L 3945095 intron fred - chr2L_4_3945001 chr2L_3945001 RAL-776 56 chr2L 3950084 3950105 chr2L 3950160 3950181 7 75 4.5 1.0 2.8 1.8 97 chr2L 3950084 intron fred - chr2L 3950132 intron fred - chr2L 3950181 intron fred - chr2L_7_3950001 chr2L_3950001 RAL-776 57 chr2L 3960561 3960587 chr2L 3960731 3960756 7 169 5.0 0.5 2.8 1.8 195 chr2L 3960561 intron fred - chr2L 3960658 intron fred - chr2L 3960756 intron fred - chr2L_7_3960001 chr2L_3960001 RAL-776 58 chr2L 4017303 4017337 chr2L 4017388 4017422 10 84 2.0 2.0 2.0 3.3 119 chr2L 4017303 intergenic not near genes chr2L 4017362 intergenic not near genes chr2L 4017422 intergenic not near genes chr2L_10_4015001 chr2L_4015001 RAL-776 59 chr2L 4037803 4037806 chr2L 4037890 4037893 4 87 5.0 2.5 3.8 0.8 90 chr2L 4037803 intron ed + chr2L 4037848 intron ed + chr2L 4037893 intron ed + chr2L_4_4035001 chr2L_4035001 RAL-776 60 chr2L 4066040 4066063 chr2L 4068865 4068888 Juan 7 2825 2.5 2.0 2.2 2.2 2848 chr2L 4066040 intron ed + chr2L 4067464 intron ed + chr2L 4068888 intron ed + chr2L_7_4065001 chr2L_4065001 RAL-776 61 chr2L 4138130 4138144 chr2L 4138210 4138224 5 79 2.0 2.5 2.2 1.6 94 chr2L 4138130 intergenic not near genes chr2L 4138177 intergenic not near genes chr2L 4138224 intergenic not near genes chr2L_5_4135001 chr2L_4135001 RAL-776 62 chr2L 4138145 4138163 chr2L 4138208 4138232 4 72 1.0 2.0 1.5 1.6 87 chr2L 4138145 intergenic not near genes chr2L 4138188 intergenic not near genes chr2L 4138232 intergenic not near genes chr2L_4_4135001 chr2L_4135001 RAL-776 63 chr2L 4155608 4155636 chr2L 4155849 4155877 5 241 0.0 2.5 1.2 2.3 269 chr2L 4155608 intergenic not near genes chr2L 4155742 intergenic not near genes chr2L 4155877 intergenic not near genes chr2L_5_4155001 chr2L_4155001 RAL-776 64 chr2L 4194554 4194585 chr2L 4194637 4194668 6 83 5.0 2.0 3.5 1.3 114 chr2L 4194554 intron CG3714 - chr2L 4194611 intron CG3714 - chr2L 4194668 intron CG3714 - chr2L_6_4190001 chr2L_4190001 RAL-776 65 chr2L 4275084 4275106 chr2L 4275157 4275189 9 82 0.5 1.5 1.0 4.5 105 chr2L 4275084 intergenic not near genes chr2L 4275136 intergenic not near genes chr2L 4275189 intergenic not near genes chr2L_9_4275001 chr2L_4275001 RAL-776 66 chr2L 4424512 4424541 chr2L 4424623 4424651 10 110 4.0 3.0 3.5 2.2 139 chr2L 4424512 intron CG15431 - chr2L 4424582 intron CG15431 - chr2L 4424651 intron CG15431 - chr2L_10_4420001 chr2L_4420001 RAL-776 67 chr2L 4475956 4475980 chr2L 4476078 4476102 9 122 8.0 3.0 5.5 1.4 146 chr2L 4475956 intron ine - chr2L 4476029 intron ine - chr2L 4476102 intron ine - chr2L_9_4475001 chr2L_4475001 RAL-776 68 chr2L 4601705 4601735 chr2L 4609144 4609176 mdg1 16 7440 1.0 3.5 2.2 5.0 7471 chr2L 4601705 intron dp - chr2L 4605440 intron dp - chr2L 4609176 intron dp - chr2L_16_4605001 chr2L_4605001 RAL-776 69 chr2L 4621808 4621827 chr2L 4621873 4621906 11 77 1.5 0.5 1.0 5.5 98 chr2L 4621808 intergenic not near genes chr2L 4621857 intergenic not near genes chr2L 4621906 intergenic not near genes chr2L_11_4620001 chr2L_4620001 RAL-776 70 chr2L 4672841 4672850 chr2L 4673297 4673306 4 456 6.0 2.5 4.2 0.8 465 chr2L 4672841 intergenic not near genes chr2L 4673074 intergenic not near genes chr2L 4673306 intergenic not near genes chr2L_4_4670001 chr2L_4670001 RAL-776 71 chr2L 4720625 4720650 chr2L 4720708 4720733 13 82 2.0 3.0 2.5 3.7 108 chr2L 4720625 3` UTR CG34351 + chr2L 4720679 3` UTR CG34351 + chr2L 4720733 3` UTR CG34351 + chr2L_13_4720001 chr2L_4720001 RAL-776 72 chr2L 4774182 4774189 chr2L 4774747 4774753 4 564 5.5 0.5 3.0 1.0 571 chr2L 4774182 intron CG15630 - chr2L 4774468 intron CG15630 - chr2L 4774753 intron CG15630 - chr2L_4_4770001 chr2L_4770001 RAL-776 73 chr2L 4819494 4819511 chr2L 4819617 4819634 6 123 3.0 5.0 4.0 1.2 140 chr2L 4819494 intergenic not near genes chr2L 4819564 intergenic not near genes chr2L 4819634 intergenic not near genes chr2L_6_4815001 chr2L_4815001 RAL-776 74 chr2L 4869468 4869498 chr2L 4869548 4869578 8 80 3.5 2.0 2.8 2.1 110 chr2L 4869468 intron pog + chr2L 4869523 intron pog + chr2L 4869578 intron pog + chr2L_8_4865001 chr2L_4865001 RAL-776 75 chr2L 4953512 4953539 chr2L 4953753 4953762 pogo 10 239 3.0 0.0 1.5 4.0 250 chr2L 4953512 intergenic Jon25Bii - chr2L 4953637 intergenic not near genes chr2L 4953762 intergenic not near genes chr2L_10_4950001 chr2L_4950001 RAL-776 76 chr2L 5027961 5027993 chr2L 5028043 5028075 8 83 2.5 2.5 2.5 2.3 114 chr2L 5027961 intron vkg - chr2L 5028018 intron vkg - chr2L 5028075 intron vkg - chr2L_8_5025001 chr2L_5025001 RAL-776 77 chr2L 5040684 5040719 chr2L 5040780 5040815 7 96 0.0 2.0 1.0 3.5 131 chr2L 5040684 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040750 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L 5040815 3` UTR,3` UTR,3` UTR CG14042 +,SP555 +,CG31650 - chr2L_7_5040001 chr2L_5040001 RAL-776 78 chr2L 5147728 5147749 chr2L 5147960 5147969 9 229 4.0 3.0 3.5 2.0 241 chr2L 5147728 intron Msp300 + chr2L 5147848 intron Msp300 + chr2L 5147969 intron Msp300 + chr2L_9_5145001 chr2L_5145001 RAL-776 79 chr2L 5379575 5379583 chr2L 5379662 5379686 5 99 5.0 1.5 3.2 1.2 111 chr2L 5379575 3` UTR CR42850 - chr2L 5379630 3` UTR CR42850 - chr2L 5379686 3` UTR CR42850 - chr2L_5_5375001 chr2L_5375001 RAL-776 80 chr2L 5508538 5508559 chr2L 5508609 5508635 8 75 3.0 3.5 3.2 1.9 97 chr2L 5508538 intergenic not near genes chr2L 5508586 intergenic not near genes chr2L 5508635 intergenic not near genes chr2L_8_5505001 chr2L_5505001 RAL-776 81 chr2L 5827721 5827737 chr2L 5836728 5836744 roo 9 9007 2.5 3.0 2.8 2.4 9023 chr2L 5827721 intron TrissinR + chr2L 5832232 intron TrissinR + chr2L 5836744 intron TrissinR + chr2L_9_5830001 chr2L_5830001 RAL-776 82 chr2L 5897594 5897625 chr2L 5897676 5897693 19 80 5.5 2.0 3.8 4.0 99 chr2L 5897594 intergenic not near genes chr2L 5897644 intergenic not near genes chr2L 5897693 intergenic not near genes chr2L_19_5895001 chr2L_5895001 RAL-776 83 chr2L 6026923 6026949 chr2L 6027007 6027033 7 84 2.0 3.5 2.8 1.8 110 chr2L 6026923 intron CG9109 - chr2L 6026978 intron CG9109 - chr2L 6027033 intron CG9109 - chr2L_7_6025001 chr2L_6025001 RAL-776 84 chr2L 6105028 6105044 chr2L 6105104 6105121 6 77 1.5 1.5 1.5 2.4 93 chr2L 6105028 intron stai + chr2L 6105074 intron stai + chr2L 6105121 intron stai + chr2L_6_6105001 chr2L_6105001 RAL-776 85 chr2L 6155409 6155436 chr2L 6155495 6155512 4 84 2.0 4.0 3.0 1.0 103 chr2L 6155409 intergenic CG31639 - chr2L 6155460 intergenic CG31639 - chr2L 6155512 intergenic CG31639 - chr2L_4_6155001 chr2L_6155001 RAL-776 86 chr2L 6185443 6185470 chr2L 6185521 6185548 6 75 1.0 2.5 1.8 2.1 105 chr2L 6185443 intron CG34380 + chr2L 6185496 intron CG34380 + chr2L 6185548 intron CG34380 + chr2L_6_6185001 chr2L_6185001 RAL-776 87 chr2L 6248471 6248479 chr2L 6248554 6248564 4 84 1.5 0.0 0.8 2.2 93 chr2L 6248471 intergenic not near genes chr2L 6248518 intergenic not near genes chr2L 6248564 intergenic not near genes chr2L_4_6245001 chr2L_6245001 RAL-776 88 chr2L 6363158 6363183 chr2L 6366081 6366109 Burdock 8 2922 2.5 5.0 3.8 1.7 2951 chr2L 6363158 intergenic not near genes chr2L 6364634 intergenic not near genes chr2L 6366109 intergenic not near genes chr2L_8_6360001 chr2L_6360001 RAL-776 89 chr2L 6386897 6386903 chr2L 6386984 6386990 6 87 2.5 2.5 2.5 1.7 93 chr2L 6386897 intron CG42368 - chr2L 6386944 intron CG42368 - chr2L 6386990 intron CG42368 - chr2L_6_6385001 chr2L_6385001 RAL-776 90 chr2L 6426855 6426888 chr2L 6445115 6445148 roo 12 18260 2.0 4.5 3.2 2.9 18293 chr2L 6426855 3` UTR CG9527 - chr2L 6436002 intron CG9527 - chr2L 6445148 exon CG9527 - chr2L_12_6435001 chr2L_6435001 RAL-776 91 chr2L 6463575 6463578 chr2L 6463648 6463669 4 78 4.0 3.0 3.5 0.9 94 chr2L 6463575 exon CG16947 - chr2L 6463622 exon CG16947 - chr2L 6463669 exon CG16947 - chr2L_4_6460001 chr2L_6460001 RAL-776 92 chr2L 6771987 6772020 chr2L 6772071 6772084 5 73 3.0 0.5 1.8 1.8 97 chr2L 6771987 intron CG11321 - chr2L 6772036 intron CG11321 - chr2L 6772084 intron CG11321 - chr2L_5_6770001 chr2L_6770001 RAL-776 93 chr2L 6799538 6799571 chr2L 6799626 6799659 7 88 2.5 0.5 1.5 2.8 121 chr2L 6799538 5` UTR CR43610 + chr2L 6799598 5` UTR CR43610 + chr2L 6799659 intergenic CR43610 +,CG17376 - chr2L_7_6795001 chr2L_6795001 RAL-776 94 chr2L 6850380 6850406 chr2L 6850463 6850489 6 82 2.0 1.0 1.5 2.4 109 chr2L 6850380 intergenic not near genes chr2L 6850434 intergenic not near genes chr2L 6850489 intergenic not near genes chr2L_6_6850001 chr2L_6850001 RAL-776 95 chr2L 6986186 6986209 chr2L 6986289 6986312 5 103 1.5 2.5 2.0 1.7 126 chr2L 6986186 intron,5` UTR uif -,CR44326 + chr2L 6986249 intron,5` UTR uif -,CR44326 + chr2L 6986312 intron,5` UTR uif -,CR44326 + chr2L_5_6985001 chr2L_6985001 RAL-776 96 chr2L 7077372 7077380 chr2L 7077446 7077457 4 76 2.0 5.0 3.5 0.9 85 chr2L 7077372 intron Pvf2 - chr2L 7077414 intron Pvf2 - chr2L 7077457 intron Pvf2 - chr2L_4_7075001 chr2L_7075001 RAL-776 97 chr2L 7090007 7090024 chr2L 7090084 7090086 6 74 0.5 5.5 3.0 1.5 79 chr2L 7090007 intergenic not near genes chr2L 7090046 intergenic not near genes chr2L 7090086 intergenic not near genes chr2L_6_7090001 chr2L_7090001 RAL-776 98 chr2L 7111758 7111767 chr2L 7111843 7111853 4 86 3.0 0.0 1.5 1.6 95 chr2L 7111758 intron Pvf3 - chr2L 7111806 intron Pvf3 - chr2L 7111853 intron Pvf3 - chr2L_4_7110001 chr2L_7110001 RAL-776 99 chr2L 7165779 7165812 chr2L 7165860 7165893 9 81 1.0 2.5 1.8 3.2 114 chr2L 7165779 intergenic not near genes chr2L 7165836 intergenic not near genes chr2L 7165893 intergenic not near genes chr2L_9_7165001 chr2L_7165001 RAL-776 100 chr2L 7215974 7215995 chr2L 7216086 7216107 6 111 4.5 0.5 2.5 1.7 133 chr2L 7215974 intron CG13784 - chr2L 7216040 intron CG13784 - chr2L 7216107 intron CG13784 - chr2L_6_7215001 chr2L_7215001 RAL-776 101 chr2L 7217235 7217267 chr2L 7217340 7217371 10 105 1.0 1.5 1.2 4.5 136 chr2L 7217235 intron CG13784 - chr2L 7217303 intron CG13784 - chr2L 7217371 intron CG13784 - chr2L_10_7215001 chr2L_7215001 RAL-776 102 chr2L 7249621 7249649 chr2L 7249703 7249732 10 79 2.0 1.0 1.5 4.0 111 chr2L 7249621 intergenic Ndae1 - chr2L 7249676 intergenic Ndae1 - chr2L 7249732 intergenic Ndae1 - chr2L_10_7245001 chr2L_7245001 RAL-776 103 chr2L 7325912 7325947 chr2L 7325997 7326021 6 79 2.5 2.0 2.2 1.9 109 chr2L 7325912 intergenic not near genes chr2L 7325966 intergenic not near genes chr2L 7326021 intergenic not near genes chr2L_6_7325001 chr2L_7325001 RAL-776 104 chr2L 7343323 7343349 chr2L 7350439 7350465 roo 5 7112 3.0 3.5 3.2 1.2 7142 chr2L 7343323 intron Wnt6 + chr2L 7346894 intron Wnt6 + chr2L 7350465 intron Wnt6 + chr2L_5_7345001 chr2L_7345001 RAL-776 105 chr2L 7363521 7363557 chr2L 7363599 7363635 4 78 0.5 1.0 0.8 2.2 114 chr2L 7363521 5` UTR Wnt10 + chr2L 7363578 5` UTR Wnt10 + chr2L 7363635 5` UTR Wnt10 + chr2L_4_7360001 chr2L_7360001 RAL-776 106 chr2L 7405780 7405807 chr2L 7405859 7405860 6 72 1.5 0.0 0.8 3.3 80 chr2L 7405780 intron CG5177 + chr2L 7405820 intron CG5177 + chr2L 7405860 intron CG5177 + chr2L_6_7405001 chr2L_7405001 RAL-776 107 chr2L 7555217 7555231 chr2L 7555294 7555308 6 77 0.5 5.0 2.8 1.6 91 chr2L 7555217 intron RapGAP1 - chr2L 7555262 intron RapGAP1 - chr2L 7555308 intron RapGAP1 - chr2L_6_7555001 chr2L_7555001 RAL-776 108 chr2L 7592917 7592950 chr2L 7593019 7593053 9 100 4.0 2.0 3.0 2.2 136 chr2L 7592917 intergenic not near genes chr2L 7592985 intergenic not near genes chr2L 7593053 intergenic not near genes chr2L_9_7590001 chr2L_7590001 RAL-776 109 chr2L 7867576 7867596 chr2L 7867670 7867690 5 92 2.0 2.5 2.2 1.6 114 chr2L 7867576 intron Proc - chr2L 7867633 intron Proc - chr2L 7867690 intron Proc - chr2L_5_7865001 chr2L_7865001 RAL-776 110 chr2L 7959050 7959068 chr2L 7960453 7960463 pogo 8 1408 4.5 0.0 2.2 2.5 1413 chr2L 7959050 intron Snoo - chr2L 7959756 intron Snoo - chr2L 7960463 intron Snoo - chr2L_8_7955001 chr2L_7955001 RAL-776 111 chr2L 7965652 7965677 chr2L 7965856 7965881 roo 6 204 1.0 2.0 1.5 2.4 229 chr2L 7965652 intron Snoo - chr2L 7965766 intron Snoo - chr2L 7965881 intron Snoo - chr2L_6_7965001 chr2L_7965001 RAL-776 112 chr2L 7977090 7977112 chr2L 7984066 7984088 297 11 6975 3.0 4.5 3.8 2.3 6998 chr2L 7977090 intron Snoo - chr2L 7980589 intron Snoo - chr2L 7984088 intron,5` UTR Snoo -,CG7231 + chr2L_11_7980001 chr2L_7980001 RAL-776 113 chr2L 8013625 8013632 chr2L 8018830 8018837 copia 5 5205 3.5 0.5 2.0 1.7 5212 chr2L 8013625 intron Tg + chr2L 8016231 intron Tg + chr2L 8018837 intron Tg + chr2L_5_8015001 chr2L_8015001 RAL-776 114 chr2L 8044110 8044131 chr2L 8044179 8044210 8 77 2.5 3.0 2.8 2.1 100 chr2L 8044110 intron CG7466 + chr2L 8044160 intron CG7466 + chr2L 8044210 intron CG7466 + chr2L_8_8040001 chr2L_8040001 RAL-776 115 chr2L 8164084 8164107 chr2L 8164194 8164218 4 111 2.0 1.0 1.5 1.6 134 chr2L 8164084 intron Piezo + chr2L 8164151 intron Piezo + chr2L 8164218 intron Piezo + chr2L_4_8160001 chr2L_8160001 RAL-776 116 chr2L 8244731 8244743 chr2L 8244853 8244865 4 122 1.5 3.5 2.5 1.1 134 chr2L 8244731 intron CG8086 - chr2L 8244798 intron CG8086 - chr2L 8244865 intron CG8086 - chr2L_4_8240001 chr2L_8240001 RAL-776 117 chr2L 8258166 8258200 chr2L 8258263 8258297 9 97 2.0 1.0 1.5 3.6 131 chr2L 8258166 intergenic Btk29A -,mir-2b-1 - chr2L 8258232 intergenic Btk29A -,mir-2b-1 - chr2L 8258297 intergenic Btk29A -,mir-2b-1 - chr2L_9_8255001 chr2L_8255001 RAL-776 118 chr2L 8291500 8291521 chr2L 8291639 8291660 8 139 4.0 4.0 4.0 1.6 160 chr2L 8291500 intron Btk29A - chr2L 8291580 intron Btk29A - chr2L 8291660 intron Btk29A - chr2L_8_8290001 chr2L_8290001 RAL-776 119 chr2L 8323722 8323729 chr2L 8323803 8323829 4 95 1.5 2.0 1.8 1.4 107 chr2L 8323722 intron CG7781 - chr2L 8323776 intron CG7781 - chr2L 8323829 intron CG7781 - chr2L_4_8320001 chr2L_8320001 RAL-776 120 chr2L 8498206 8498239 chr2L 8498287 8498320 15 80 2.0 1.5 1.8 5.4 114 chr2L 8498206 intron Dh31 - chr2L 8498263 intron Dh31 - chr2L 8498320 intron Dh31 - chr2L_15_8495001 chr2L_8495001 RAL-776 121 chr2L 8594463 8594466 chr2L 8601517 8601520 297 4 7054 7.0 0.0 3.5 0.9 7057 chr2L 8594463 intron,3` UTR Sema-1a +,CR43855 - chr2L 8597992 intron Sema-1a + chr2L 8601520 intron Sema-1a + chr2L_4_8595001 chr2L_8595001 RAL-776 122 chr2L 8723115 8723142 chr2L 8731492 8731519 Tirant 6 8377 2.0 2.0 2.0 2.0 8404 chr2L 8723115 intron raw - chr2L 8727317 intron raw - chr2L 8731519 intron raw - chr2L_6_8725001 chr2L_8725001 RAL-776 123 chr2L 8799808 8799831 chr2L 8799924 8799942 6 115 0.0 3.5 1.8 2.1 134 chr2L 8799808 intergenic not near genes chr2L 8799875 intergenic not near genes chr2L 8799942 intergenic not near genes chr2L_6_8795001 chr2L_8795001 RAL-776 124 chr2L 8815394 8815423 chr2L 8815760 8815787 7 366 3.5 8.0 5.8 1.0 393 chr2L 8815394 intergenic not near genes chr2L 8815590 intergenic not near genes chr2L 8815787 intergenic not near genes chr2L_7_8815001 chr2L_8815001 RAL-776 125 chr2L 8902456 8902485 chr2L 8902603 8902632 6 147 2.5 3.0 2.8 1.6 176 chr2L 8902456 intron CG34398 + chr2L 8902544 intron CG34398 + chr2L 8902632 intron CG34398 + chr2L_6_8900001 chr2L_8900001 RAL-776 126 chr2L 8910723 8910746 chr2L 8910814 8910837 14 90 2.0 0.0 1.0 7.0 114 chr2L 8910723 intron CG34398 + chr2L 8910780 intron CG34398 + chr2L 8910837 intron CG34398 + chr2L_14_8910001 chr2L_8910001 RAL-776 127 chr2L 8939665 8939699 chr2L 8939745 8939779 7 80 0.0 3.5 1.8 2.5 114 chr2L 8939665 3` UTR Tsp29Fb + chr2L 8939722 3` UTR Tsp29Fb + chr2L 8939779 intergenic CG9510 -,Tsp29Fb + chr2L_7_8935001 chr2L_8935001 RAL-776 128 chr2L 9000279 9000312 chr2L 9007789 9007819 roo 13 7510 3.5 4.0 3.8 2.7 7540 chr2L 9000279 intergenic Try29F + chr2L 9004049 intergenic not near genes chr2L 9007819 intergenic not near genes chr2L_13_9000001 chr2L_9000001 RAL-776 129 chr2L 9025661 9025695 chr2L 9025857 9025891 12 191 1.0 4.0 2.5 3.4 230 chr2L 9025661 intron,3` UTR CG9582 -,CR44352 - chr2L 9025776 intron,3` UTR CG9582 -,CR44352 - chr2L 9025891 intron,3` UTR CG9582 -,CR44352 - chr2L_12_9025001 chr2L_9025001 RAL-776 130 chr2L 9084336 9084340 chr2L 16217660 16217660 6 7133322 17.0 18.0 17.5 0.3 7133324 chr2L 9084336 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-776 131 chr2L 9173075 9173093 chr2L 9173149 9173166 4 75 0.0 1.0 0.5 2.7 91 chr2L 9173075 intron tai + chr2L 9173120 intron tai + chr2L 9173166 intron tai + chr2L_4_9170001 chr2L_9170001 RAL-776 132 chr2L 9280013 9280021 chr2L 9280107 9280113 5 93 1.5 6.5 4.0 1.0 100 chr2L 9280013 intron Ggamma30A + chr2L 9280063 intron Ggamma30A + chr2L 9280113 intron Ggamma30A + chr2L_5_9280001 chr2L_9280001 RAL-776 133 chr2L 9354662 9354694 chr2L 9354794 9354826 6 132 2.0 3.5 2.8 1.6 164 chr2L 9354662 intergenic not near genes chr2L 9354744 intergenic not near genes chr2L 9354826 intergenic not near genes chr2L_6_9350001 chr2L_9350001 RAL-776 134 chr2L 9385118 9385150 chr2L 9385207 9385240 13 88 5.0 1.0 3.0 3.2 122 chr2L 9385118 intron Shawl - chr2L 9385179 intron Shawl - chr2L 9385240 intron Shawl - chr2L_13_9385001 chr2L_9385001 RAL-776 135 chr2L 9387252 9387266 chr2L 9387350 9387364 4 98 2.0 0.5 1.2 1.8 112 chr2L 9387252 intron Shawl - chr2L 9387308 intron Shawl - chr2L 9387364 intron Shawl - chr2L_4_9385001 chr2L_9385001 RAL-776 136 chr2L 9393497 9393531 chr2L 9396464 9396498 jockey 11 2965 3.0 6.0 4.5 2.0 3001 chr2L 9393497 intron Shawl - chr2L 9394998 intron Shawl - chr2L 9396498 intron Shawl - chr2L_11_9390001 chr2L_9390001 RAL-776 137 chr2L 9423189 9423218 chr2L 9423265 9423296 8 78 2.0 1.5 1.8 2.9 107 chr2L 9423189 intron Mco1 + chr2L 9423242 intron Mco1 + chr2L 9423296 exon Mco1 + chr2L_8_9420001 chr2L_9420001 RAL-776 138 chr2L 9454980 9455003 chr2L 9455082 9455105 5 102 1.0 1.5 1.2 2.3 125 chr2L 9454980 intron numb + chr2L 9455042 intron numb + chr2L 9455105 intron numb + chr2L_5_9455001 chr2L_9455001 RAL-776 139 chr2L 9456933 9456954 chr2L 9457014 9457032 9 80 1.0 6.5 3.8 1.9 99 chr2L 9456933 intron numb + chr2L 9456982 intron numb + chr2L 9457032 intron numb + chr2L_9_9455001 chr2L_9455001 RAL-776 140 chr2L 9460760 9460772 chr2L 9460845 9460852 4 84 5.0 0.5 2.8 1.1 92 chr2L 9460760 intron numb + chr2L 9460806 intron numb + chr2L 9460852 intron numb + chr2L_4_9460001 chr2L_9460001 RAL-776 141 chr2L 9498355 9498385 chr2L 9498435 9498465 9 80 2.0 3.0 2.5 2.6 110 chr2L 9498355 intron CG33298 + chr2L 9498410 intron CG33298 + chr2L 9498465 intron CG33298 + chr2L_9_9495001 chr2L_9495001 RAL-776 142 chr2L 9618899 9618910 chr2L 9618972 9618987 6 76 4.0 2.5 3.2 1.4 88 chr2L 9618899 intron GlcAT-S + chr2L 9618943 intron GlcAT-S + chr2L 9618987 intron GlcAT-S + chr2L_6_9615001 chr2L_9615001 RAL-776 143 chr2L 9730974 9730993 chr2L 9731057 9731076 6 83 1.5 2.0 1.8 2.1 102 chr2L 9730974 intron Nckx30C - chr2L 9731025 intron Nckx30C - chr2L 9731076 intron Nckx30C - chr2L_6_9730001 chr2L_9730001 RAL-776 144 chr2L 9828263 9828272 chr2L 9828343 9828350 4 80 3.0 12.5 7.8 0.5 87 chr2L 9828263 intron nAChRalpha6 - chr2L 9828306 intron nAChRalpha6 - chr2L 9828350 intron nAChRalpha6 - chr2L_4_9825001 chr2L_9825001 RAL-776 145 chr2L 9829580 9829601 chr2L 9829782 9829803 5 200 1.5 3.0 2.2 1.6 223 chr2L 9829580 intron nAChRalpha6 - chr2L 9829692 intron nAChRalpha6 - chr2L 9829803 intron nAChRalpha6 - chr2L_5_9825001 chr2L_9825001 RAL-776 146 chr2L 9834199 9834212 chr2L 9834279 9834294 4 82 5.0 2.5 3.8 0.8 95 chr2L 9834199 intron nAChRalpha6 - chr2L 9834246 intron nAChRalpha6 - chr2L 9834294 intron nAChRalpha6 - chr2L_4_9830001 chr2L_9830001 RAL-776 147 chr2L 9973725 9973756 chr2L 9980843 9980875 HMS-Beagle 14 7117 2.5 5.0 3.8 2.9 7150 chr2L 9973725 intergenic not near genes chr2L 9977300 intergenic not near genes chr2L 9980875 intergenic not near genes chr2L_14_9975001 chr2L_9975001 RAL-776 148 chr2L 9986354 9986381 chr2L 9986449 9986476 9 94 5.5 9.5 7.5 1.1 122 chr2L 9986354 intron bib + chr2L 9986415 intron bib + chr2L 9986476 intron bib + chr2L_9_9985001 chr2L_9985001 RAL-776 149 chr2L 10051725 10051754 chr2L 10051809 10051839 5 83 3.5 5.0 4.2 1.0 114 chr2L 10051725 5` UTR CR44874 + chr2L 10051782 5` UTR CR44874 + chr2L 10051839 5` UTR CR44874 + chr2L_5_10050001 chr2L_10050001 RAL-776 150 chr2L 10095639 10095654 chr2L 10095719 10095734 4 80 5.5 2.0 3.8 0.8 95 chr2L 10095639 intron CG44153 - chr2L 10095686 intron CG44153 - chr2L 10095734 intron CG44153 - chr2L_4_10095001 chr2L_10095001 RAL-776 151 chr2L 10154536 10154565 chr2L 10154623 10154652 10 87 0.0 2.0 1.0 5.0 116 chr2L 10154536 intron,intron CG44153 -,CG4839 + chr2L 10154594 intron,intron CG44153 -,CG4839 + chr2L 10154652 intron,intron CG44153 -,CG4839 + chr2L_10_10150001 chr2L_10150001 RAL-776 152 chr2L 10156326 10156347 chr2L 10163795 10163816 blood 15 7469 5.0 3.0 4.0 3.0 7490 chr2L 10156326 intron,3` UTR CG44153 -,CG4839 + chr2L 10160071 intron CG44153 - chr2L 10163816 intron CG44153 - chr2L_15_10160001 chr2L_10160001 RAL-776 153 chr2L 10474387 10474398 chr2L 10474468 10474479 7 80 8.5 4.0 6.2 1.0 92 chr2L 10474387 intergenic RluA-1 - chr2L 10474433 intergenic RluA-1 - chr2L 10474479 intergenic RluA-1 - chr2L_7_10470001 chr2L_10470001 RAL-776 154 chr2L 10579057 10579071 chr2L 10579147 10579161 4 90 9.0 15.0 12.0 0.3 104 chr2L 10579057 intron Trim9 + chr2L 10579109 intron Trim9 + chr2L 10579161 intron Trim9 + chr2L_4_10575001 chr2L_10575001 RAL-776 155 chr2L 10634762 10634788 chr2L 10634842 10634868 5 80 3.5 1.5 2.5 1.4 106 chr2L 10634762 intron CG7329 - chr2L 10634815 intron CG7329 - chr2L 10634868 intron CG7329 - chr2L_5_10630001 chr2L_10630001 RAL-776 156 chr2L 10640643 10640665 chr2L 10640730 10640753 5 88 12.5 15.5 14.0 0.3 110 chr2L 10640643 exon CG31872 + chr2L 10640698 exon CG31872 + chr2L 10640753 exon CG31872 + chr2L_5_10640001 chr2L_10640001 RAL-776 157 chr2L 10647599 10647608 chr2L 10647724 10647733 4 123 9.0 18.0 13.5 0.3 134 chr2L 10647599 exon CG17097 + chr2L 10647666 exon CG17097 + chr2L 10647733 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-776 158 chr2L 10648083 10648101 chr2L 10648226 10648244 12 142 12.5 14.5 13.5 0.8 161 chr2L 10648083 exon CG17097 + chr2L 10648164 exon CG17097 + chr2L 10648244 exon CG17097 + chr2L_12_10645001 chr2L_10645001 RAL-776 159 chr2L 10647673 10647682 chr2L 10648116 10648122 4 441 17.5 14.0 15.8 0.2 449 chr2L 10647673 exon CG17097 + chr2L 10647898 exon CG17097 + chr2L 10648122 exon CG17097 + chr2L_4_10645001 chr2L_10645001 RAL-776 160 chr2L 10727298 10727309 chr2L 10727409 10727420 4 111 7.5 3.5 5.5 0.6 122 chr2L 10727298 intron CG6431 + chr2L 10727359 intron CG6431 + chr2L 10727420 intron CG6431 + chr2L_4_10725001 chr2L_10725001 RAL-776 161 chr2L 10862854 10862869 chr2L 10864468 10864480 Rt1c 7 1613 3.5 8.5 6.0 1.0 1626 chr2L 10862854 3` UTR CR43807 - chr2L 10863667 intron CR43807 - chr2L 10864480 3` UTR CR43807 - chr2L_7_10860001 chr2L_10860001 RAL-776 162 chr2L 10946951 10946977 chr2L 10956166 10956192 roo 12 9213 2.0 6.5 4.2 2.3 9241 chr2L 10946951 intron dpr2 - chr2L 10951572 intron dpr2 - chr2L 10956192 intron dpr2 - chr2L_12_10950001 chr2L_10950001 RAL-776 163 chr2L 11188789 11188811 chr2L 11188868 11188890 4 79 4.0 12.5 8.2 0.4 101 chr2L 11188789 intron Ca-beta - chr2L 11188840 intron Ca-beta - chr2L 11188890 intron Ca-beta - chr2L_4_11185001 chr2L_11185001 RAL-776 164 chr2L 11537771 11537785 chr2L 11537888 11537902 8 117 3.0 4.5 3.8 1.7 131 chr2L 11537771 intergenic not near genes chr2L 11537836 intergenic not near genes chr2L 11537902 intergenic not near genes chr2L_8_11535001 chr2L_11535001 RAL-776 165 chr2L 11563640 11563670 chr2L 11568844 11568874 copia 5 5201 4.0 0.5 2.2 1.6 5234 chr2L 11563640 intergenic not near genes chr2L 11566257 intergenic not near genes chr2L 11568874 intergenic not near genes chr2L_5_11565001 chr2L_11565001 RAL-776 166 chr2L 11570384 11570398 chr2L 11570462 11570491 7 90 2.5 4.5 3.5 1.6 107 chr2L 11570384 intergenic not near genes chr2L 11570438 intergenic not near genes chr2L 11570491 intergenic not near genes chr2L_7_11570001 chr2L_11570001 RAL-776 167 chr2L 11614059 11614085 chr2L 11615552 11615579 hopper2 5 1494 3.0 4.0 3.5 1.1 1520 chr2L 11614059 intron kek2 + chr2L 11614819 intron kek2 + chr2L 11615579 intron kek2 + chr2L_5_11610001 chr2L_11610001 RAL-776 168 chr2L 11663239 11663258 chr2L 11663326 11663345 5 87 8.5 7.5 8.0 0.6 106 chr2L 11663239 intergenic CG44477 + chr2L 11663292 5` UTR CG44477 + chr2L 11663345 exon CG44477 + chr2L_5_11660001 chr2L_11660001 RAL-776 169 chr2L 11674694 11674710 chr2L 11675047 11675063 5 353 1.0 3.0 2.0 1.7 369 chr2L 11674694 intergenic not near genes chr2L 11674878 intergenic not near genes chr2L 11675063 intergenic not near genes chr2L_5_11670001 chr2L_11670001 RAL-776 170 chr2L 11707053 11707084 chr2L 11707158 11707189 5 104 3.5 1.5 2.5 1.4 136 chr2L 11707053 intergenic not near genes chr2L 11707121 intergenic not near genes chr2L 11707189 intergenic not near genes chr2L_5_11705001 chr2L_11705001 RAL-776 171 chr2L 11713505 11713531 chr2L 11720973 11720999 blood 11 7467 6.5 2.0 4.2 2.1 7494 chr2L 11713505 intergenic not near genes chr2L 11717252 intergenic not near genes chr2L 11720999 intergenic CR44143 + chr2L_11_11715001 chr2L_11715001 RAL-776 172 chr2L 11732959 11732967 chr2L 11733036 11733043 5 77 4.5 3.0 3.8 1.0 84 chr2L 11732959 intergenic not near genes chr2L 11733001 intergenic not near genes chr2L 11733043 intergenic not near genes chr2L_5_11730001 chr2L_11730001 RAL-776 173 chr2L 11743760 11743771 chr2L 11743835 11743848 4 76 10.0 9.5 9.8 0.4 88 chr2L 11743760 intron,3` UTR Vha100-5 +,CR44144 - chr2L 11743804 intron,3` UTR Vha100-5 +,CR44144 - chr2L 11743848 exon,3` UTR Vha100-5 +,CR44144 - chr2L_4_11740001 chr2L_11740001 RAL-776 174 chr2L 11752864 11752889 chr2L 11753154 11753179 13 287 2.0 3.0 2.5 3.7 315 chr2L 11752864 intergenic CG42470 - chr2L 11753022 3` UTR CG42470 - chr2L 11753179 3` UTR CG42470 - chr2L_13_11750001 chr2L_11750001 RAL-776 175 chr2L 11820430 11820463 chr2L 11820511 11820541 11 81 3.0 3.0 3.0 2.8 111 chr2L 11820430 intron Pde1c - chr2L 11820486 intron Pde1c - chr2L 11820541 intron Pde1c - chr2L_11_11820001 chr2L_11820001 RAL-776 176 chr2L 11845764 11845794 chr2L 11845868 11845898 10 104 29.5 9.5 19.5 0.5 134 chr2L 11845764 intron Pde1c - chr2L 11845831 intron Pde1c - chr2L 11845898 intron Pde1c - chr2L_10_11845001 chr2L_11845001 RAL-776 177 chr2L 11855356 11855363 chr2L 11855461 11855462 4 103 4.5 10.0 7.2 0.5 106 chr2L 11855356 intron Pde1c - chr2L 11855409 intron Pde1c - chr2L 11855462 intron Pde1c - chr2L_4_11855001 chr2L_11855001 RAL-776 178 chr2L 11856184 11856191 chr2L 11856355 11856356 5 169 3.5 0.5 2.0 1.7 172 chr2L 11856184 intron Pde1c - chr2L 11856270 intron Pde1c - chr2L 11856356 intron Pde1c - chr2L_5_11855001 chr2L_11855001 RAL-776 179 chr2L 11953743 11953766 chr2L 11953823 11953834 7 77 0.0 2.5 1.2 3.2 91 chr2L 11953743 3` UTR CR43314 - chr2L 11953788 3` UTR CR43314 - chr2L 11953834 3` UTR CR43314 - chr2L_7_11950001 chr2L_11950001 RAL-776 180 chr2L 12005521 12005537 chr2L 12005608 12005619 4 84 7.5 2.5 5.0 0.7 98 chr2L 12005521 intergenic not near genes chr2L 12005570 intergenic not near genes chr2L 12005619 intergenic not near genes chr2L_4_12005001 chr2L_12005001 RAL-776 181 chr2L 12157612 12157637 chr2L 12157691 12157716 14 78 3.0 3.5 3.2 3.3 104 chr2L 12157612 intron CG31760 + chr2L 12157664 intron CG31760 + chr2L 12157716 intron CG31760 + chr2L_14_12155001 chr2L_12155001 RAL-776 182 chr2L 12387915 12387940 chr2L 12388018 12388037 6 102 7.5 2.0 4.8 1.0 122 chr2L 12387915 intron bru-2 + chr2L 12387976 intron bru-2 + chr2L 12388037 intron bru-2 + chr2L_6_12385001 chr2L_12385001 RAL-776 183 chr2L 12396051 12396064 chr2L 12396145 12396158 4 94 1.0 0.0 0.5 2.7 107 chr2L 12396051 intron bru-2 + chr2L 12396104 intron bru-2 + chr2L 12396158 intron bru-2 + chr2L_4_12395001 chr2L_12395001 RAL-776 184 chr2L 12487886 12487919 chr2L 12487967 12488000 14 79 2.5 3.0 2.8 3.7 114 chr2L 12487886 intron bun - chr2L 12487943 intron bun - chr2L 12488000 intron bun - chr2L_14_12485001 chr2L_12485001 RAL-776 185 chr2L 12529245 12529447 chr2L 12529378 12529523 7 84 1.0 2.0 1.5 2.8 278 chr2L 12529245 intron bun - chr2L 12529384 intron bun - chr2L 12529523 intron bun - chr2L_7_12525001 chr2L_12525001 RAL-776 186 chr2L 12728927 12728945 chr2L 12729167 12729185 pogo 5 240 3.0 2.0 2.5 1.4 258 chr2L 12728927 intron MRP + chr2L 12729056 intron MRP + chr2L 12729185 exon MRP + chr2L_5_12725001 chr2L_12725001 RAL-776 187 chr2L 12731059 12731074 chr2L 12735826 12735841 F-element 8 4767 2.5 3.0 2.8 2.1 4782 chr2L 12731059 intron MRP + chr2L 12733450 intron MRP + chr2L 12735841 intron MRP + chr2L_8_12730001 chr2L_12730001 RAL-776 188 chr2L 12739175 12739202 chr2L 12743956 12743983 Doc 11 4780 3.5 3.0 3.2 2.6 4808 chr2L 12739175 exon MRP + chr2L 12741579 intron MRP + chr2L 12743983 exon MRP + chr2L_11_12740001 chr2L_12740001 RAL-776 189 chr2L 12749625 12749632 chr2L 12749689 12749710 4 71 3.5 5.5 4.5 0.7 85 chr2L 12749625 intergenic not near genes chr2L 12749668 intergenic not near genes chr2L 12749710 intergenic not near genes chr2L_4_12745001 chr2L_12745001 RAL-776 190 chr2L 12751314 12751341 chr2L 12751397 12751424 8 83 2.0 3.5 2.8 2.1 110 chr2L 12751314 intergenic not near genes chr2L 12751369 intergenic not near genes chr2L 12751424 intergenic not near genes chr2L_8_12750001 chr2L_12750001 RAL-776 191 chr2L 12815100 12815135 chr2L 12815376 12815410 6 275 3.0 2.0 2.5 1.7 310 chr2L 12815100 intergenic not near genes chr2L 12815255 intergenic not near genes chr2L 12815410 intergenic not near genes chr2L_6_12815001 chr2L_12815001 RAL-776 192 chr2L 12859287 12859296 chr2L 12859647 12859656 4 360 3.0 13.5 8.2 0.4 369 chr2L 12859287 intergenic not near genes chr2L 12859472 intergenic not near genes chr2L 12859656 intergenic not near genes chr2L_4_12855001 chr2L_12855001 RAL-776 193 chr2L 12861695 12861726 chr2L 12863162 12863193 hobo 13 1464 4.0 4.5 4.2 2.5 1498 chr2L 12861695 intergenic not near genes chr2L 12862444 intergenic not near genes chr2L 12863193 intergenic not near genes chr2L_13_12860001 chr2L_12860001 RAL-776 194 chr2L 12933860 12933880 chr2L 12941327 12941346 blood 5 7466 4.5 4.0 4.2 1.0 7486 chr2L 12933860 intergenic not near genes chr2L 12937603 intergenic not near genes chr2L 12941346 intergenic not near genes chr2L_5_12935001 chr2L_12935001 RAL-776 195 chr2L 12975823 12975854 chr2L 12975905 12975936 10 81 2.5 3.0 2.8 2.6 113 chr2L 12975823 intron Vha68-2 + chr2L 12975880 intron Vha68-2 + chr2L 12975936 intron Vha68-2 + chr2L_10_12975001 chr2L_12975001 RAL-776 196 chr2L 13092451 13092472 chr2L 13092650 13092671 9 197 6.0 2.5 4.2 1.7 220 chr2L 13092451 intergenic not near genes chr2L 13092561 intergenic not near genes chr2L 13092671 intergenic not near genes chr2L_9_13090001 chr2L_13090001 RAL-776 197 chr2L 13109452 13109476 chr2L 13109580 13109604 4 128 6.5 6.0 6.2 0.6 152 chr2L 13109452 3` UTR CG5142 + chr2L 13109528 intergenic CG5142 + chr2L 13109604 intergenic CG5142 + chr2L_4_13105001 chr2L_13105001 RAL-776 198 chr2L 13204318 13204334 chr2L 13204413 13204418 4 92 20.5 18.5 19.5 0.2 100 chr2L 13204318 intron Pect + chr2L 13204368 intron Pect + chr2L 13204418 intron Pect + chr2L_4_13200001 chr2L_13200001 RAL-776 199 chr2L 13212587 13212611 chr2L 13214583 13214610 4 1998 14.5 9.5 12.0 0.3 2023 chr2L 13212587 3` UTR kek4 - chr2L 13213598 exon kek4 - chr2L 13214610 exon kek4 - chr2L_4_13210001 chr2L_13210001 RAL-776 200 chr2L 13241960 13241971 chr2L 13244344 13244355 BS 8 2384 1.5 2.0 1.8 2.9 2395 chr2L 13241960 5` UTR CR45330 + chr2L 13243158 intron CR45330 + chr2L 13244355 5` UTR CR45330 + chr2L_8_13240001 chr2L_13240001 RAL-776 201 chr2L 13266379 13266404 chr2L 13266466 13266492 8 86 1.5 5.5 3.5 1.8 113 chr2L 13266379 intron CG44085 + chr2L 13266436 intron CG44085 + chr2L 13266492 intron CG44085 + chr2L_8_13265001 chr2L_13265001 RAL-776 202 chr2L 13405655 13405679 chr2L 13410452 13410474 Doc 9 4795 1.5 4.5 3.0 2.2 4819 chr2L 13405655 exon CG7110 + chr2L 13408064 intron CG7110 + chr2L 13410474 intron CG7110 + chr2L_9_13405001 chr2L_13405001 RAL-776 203 chr2L 13449461 13449496 chr2L 13456897 13456931 Quasimodo 10 7436 3.0 3.5 3.2 2.4 7470 chr2L 13449461 intron,5` UTR CG42784 +,Hsp60D - chr2L 13453196 intron CG42784 + chr2L 13456931 intron CG42784 + chr2L_10_13450001 chr2L_13450001 RAL-776 204 chr2L 13481450 13481474 chr2L 13482057 13482081 jockey 9 607 3.0 6.0 4.5 1.6 631 chr2L 13481450 intron CG42784 + chr2L 13481766 intron CG42784 + chr2L 13482081 intron CG42784 + chr2L_9_13480001 chr2L_13480001 RAL-776 205 chr2L 13530745 13530764 chr2L 13531143 13531162 7 398 2.5 7.5 5.0 1.2 417 chr2L 13530745 intron B4 - chr2L 13530954 intron B4 - chr2L 13531162 intron,exon B4 -,CG33643 + chr2L_7_13530001 chr2L_13530001 RAL-776 206 chr2L 13573005 13573035 chr2L 13573173 13573205 8 170 1.5 2.0 1.8 2.9 200 chr2L 13573005 intron kuz + chr2L 13573105 intron kuz + chr2L 13573205 intron kuz + chr2L_8_13570001 chr2L_13570001 RAL-776 207 chr2L 13573447 13573481 chr2L 13573538 13573572 10 90 5.0 7.0 6.0 1.4 125 chr2L 13573447 intron kuz + chr2L 13573510 intron kuz + chr2L 13573572 intron kuz + chr2L_10_13570001 chr2L_13570001 RAL-776 208 chr2L 13622137 13622149 chr2L 13622236 13622237 4 96 4.5 2.0 3.2 1.0 100 chr2L 13622137 intron kuz + chr2L 13622187 intron kuz + chr2L 13622237 intron kuz + chr2L_4_13620001 chr2L_13620001 RAL-776 209 chr2L 13682474 13682489 chr2L 13683587 13683605 4 1115 5.5 19.5 12.5 0.3 1131 chr2L 13682474 intron CG31814 - chr2L 13683040 intron CG31814 - chr2L 13683605 intron CG31814 - chr2L_4_13680001 chr2L_13680001 RAL-776 210 chr2L 13682415 13682441 chr2L 13683611 13683633 6 1196 6.0 20.5 13.2 0.4 1218 chr2L 13682415 intron CG31814 - chr2L 13683024 intron CG31814 - chr2L 13683633 intron CG31814 - chr2L_6_13680001 chr2L_13680001 RAL-776 211 chr2L 13693009 13693040 chr2L 13693085 13693116 8 76 2.0 6.5 4.2 1.5 107 chr2L 13693009 intron CG31814 - chr2L 13693062 intron CG31814 - chr2L 13693116 intron CG31814 - chr2L_8_13690001 chr2L_13690001 RAL-776 212 chr2L 13761811 13761820 chr2L 13762922 13762927 Doc 4 1110 8.0 1.0 4.5 0.7 1116 chr2L 13761811 intron TM9SF4 + chr2L 13762369 intron TM9SF4 + chr2L 13762927 intron TM9SF4 + chr2L_4_13760001 chr2L_13760001 RAL-776 213 chr2L 13853093 13853111 chr2L 13862243 13862261 roo 4 9150 5.0 2.0 3.5 0.9 9168 chr2L 13853093 intron CenG1A + chr2L 13857677 intron CenG1A + chr2L 13862261 intron CenG1A + chr2L_4_13855001 chr2L_13855001 RAL-776 214 chr2L 13988287 13988298 chr2L 13988370 13988385 4 86 2.0 1.5 1.8 1.4 98 chr2L 13988287 intron rk - chr2L 13988336 intron rk - chr2L 13988385 intron rk - chr2L_4_13985001 chr2L_13985001 RAL-776 215 chr2L 14109517 14109543 chr2L 14109608 14109634 5 90 2.0 3.5 2.8 1.3 117 chr2L 14109517 intergenic CG15293 -,CG31769 - chr2L 14109576 intergenic CG31769 -,CG15293 - chr2L 14109634 3` UTR CG31769 - chr2L_5_14105001 chr2L_14105001 RAL-776 216 chr2L 14118660 14118689 chr2L 14118759 14118788 13 99 1.0 2.0 1.5 5.2 128 chr2L 14118660 intergenic not near genes chr2L 14118724 intergenic not near genes chr2L 14118788 intergenic not near genes chr2L_13_14115001 chr2L_14115001 RAL-776 217 chr2L 14222308 14222328 chr2L 14222395 14222414 5 86 2.5 7.5 5.0 0.8 106 chr2L 14222308 intron Dyrk2 - chr2L 14222361 intron Dyrk2 - chr2L 14222414 intron Dyrk2 - chr2L_5_14220001 chr2L_14220001 RAL-776 218 chr2L 14236237 14236255 chr2L 14236334 14236352 4 97 7.5 3.5 5.5 0.6 115 chr2L 14236237 5` UTR CR44728 + chr2L 14236294 5` UTR CR44728 + chr2L 14236352 intergenic CR44728 + chr2L_4_14235001 chr2L_14235001 RAL-776 219 chr2L 14367826 14367842 chr2L 14367952 14367967 9 127 1.5 4.0 2.8 2.4 141 chr2L 14367826 intergenic not near genes chr2L 14367896 intergenic not near genes chr2L 14367967 intergenic not near genes chr2L_9_14365001 chr2L_14365001 RAL-776 220 chr2L 14374780 14374802 chr2L 14374871 14374893 6 91 0.5 1.0 0.8 3.3 113 chr2L 14374780 intergenic not near genes chr2L 14374836 intergenic not near genes chr2L 14374893 intergenic not near genes chr2L_6_14370001 chr2L_14370001 RAL-776 221 chr2L 14510538 14510567 chr2L 14510636 14510648 4 95 11.0 7.5 9.2 0.4 110 chr2L 14510538 3` UTR CR45693 - chr2L 14510593 3` UTR CR45693 - chr2L 14510648 3` UTR CR45693 - chr2L_4_14510001 chr2L_14510001 RAL-776 222 chr2L 14588388 14588418 chr2L 14588537 14588571 10 152 0.5 4.0 2.2 3.1 183 chr2L 14588388 intergenic CG42680 - chr2L 14588480 intergenic CG42680 - chr2L 14588571 intergenic CG42680 - chr2L_10_14585001 chr2L_14585001 RAL-776 223 chr2L 14601975 14602003 chr2L 14602059 14602087 5 80 9.5 5.0 7.2 0.6 112 chr2L 14601975 exon osp - chr2L 14602031 intron osp - chr2L 14602087 intron osp - chr2L_5_14600001 chr2L_14600001 RAL-776 224 chr2L 14707219 14707225 chr2L 14707338 14707344 7 119 2.0 1.5 1.8 2.5 125 chr2L 14707219 intergenic not near genes chr2L 14707282 intergenic not near genes chr2L 14707344 intergenic not near genes chr2L_7_14705001 chr2L_14705001 RAL-776 225 chr2L 14715536 14715567 chr2L 14715627 14715658 5 91 5.5 7.0 6.2 0.7 122 chr2L 14715536 intergenic not near genes chr2L 14715597 intergenic not near genes chr2L 14715658 intergenic not near genes chr2L_5_14715001 chr2L_14715001 RAL-776 226 chr2L 14765244 14765271 chr2L 14765325 14765334 6 78 15.5 13.0 14.2 0.4 90 chr2L 14765244 intergenic not near genes chr2L 14765289 intergenic not near genes chr2L 14765334 intergenic not near genes chr2L_6_14765001 chr2L_14765001 RAL-776 227 chr2L 14889955 14889988 chr2L 14890380 14890413 jockey 10 425 2.0 6.0 4.0 2.0 458 chr2L 14889955 intergenic not near genes chr2L 14890184 intergenic not near genes chr2L 14890413 intergenic not near genes chr2L_10_14890001 chr2L_14890001 RAL-776 228 chr2L 15003548 15003569 chr2L 15003631 15003649 6 82 3.0 5.5 4.2 1.2 101 chr2L 15003548 intergenic not near genes chr2L 15003598 intergenic not near genes chr2L 15003649 intergenic not near genes chr2L_6_15000001 chr2L_15000001 RAL-776 229 chr2L 15079901 15079926 chr2L 15079993 15080008 7 88 8.0 3.5 5.8 1.0 107 chr2L 15079901 intron CG15270 + chr2L 15079954 intron CG15270 + chr2L 15080008 intron CG15270 + chr2L_7_15075001 chr2L_15075001 RAL-776 230 chr2L 15082661 15082676 chr2L 15082755 15082770 6 94 5.0 1.5 3.2 1.4 109 chr2L 15082661 intron CG15270 + chr2L 15082716 intron CG15270 + chr2L 15082770 intron CG15270 + chr2L_6_15080001 chr2L_15080001 RAL-776 231 chr2L 15285373 15285406 chr2L 15285475 15285508 9 100 7.5 5.0 6.2 1.2 135 chr2L 15285373 exon CG15263 + chr2L 15285440 exon CG15263 + chr2L 15285508 exon CG15263 + chr2L_9_15285001 chr2L_15285001 RAL-776 232 chr2L 15394170 15394181 chr2L 15394260 15394271 4 90 5.0 2.0 3.5 0.9 101 chr2L 15394170 intergenic not near genes chr2L 15394220 intergenic not near genes chr2L 15394271 intergenic not near genes chr2L_4_15390001 chr2L_15390001 RAL-776 233 chr2L 15446053 15446083 chr2L 15453522 15453552 blood 5 7469 1.5 1.5 1.5 2.0 7499 chr2L 15446053 intergenic not near genes chr2L 15449802 intergenic not near genes chr2L 15453552 intergenic not near genes chr2L_5_15445001 chr2L_15445001 RAL-776 234 chr2L 15541077 15541093 chr2L 15541170 15541180 6 94 2.5 1.0 1.8 2.1 103 chr2L 15541077 intergenic not near genes chr2L 15541128 intergenic not near genes chr2L 15541180 intergenic not near genes chr2L_6_15540001 chr2L_15540001 RAL-776 235 chr2L 15586410 15586443 chr2L 15593462 15593478 297 10 7049 2.5 2.5 2.5 2.9 7068 chr2L 15586410 intergenic not near genes chr2L 15589944 intergenic not near genes chr2L 15593478 intergenic not near genes chr2L_10_15585001 chr2L_15585001 RAL-776 236 chr2L 15768426 15768435 chr2L 15768508 15768513 5 81 2.5 0.5 1.5 2.0 87 chr2L 15768426 intergenic wek -,Ku80 - chr2L 15768470 intergenic wek -,Ku80 - chr2L 15768513 intergenic Ku80 -,wek - chr2L_5_15765001 chr2L_15765001 RAL-776 237 chr2L 15823353 15823371 chr2L 15823429 15823447 5 76 1.5 2.5 2.0 1.7 94 chr2L 15823353 intergenic CR44601 - chr2L 15823400 intergenic CR44601 - chr2L 15823447 intergenic not near genes chr2L_5_15820001 chr2L_15820001 RAL-776 238 chr2L 15887723 15887733 chr2L 15887854 15887866 4 132 5.0 3.0 4.0 0.8 143 chr2L 15887723 intergenic not near genes chr2L 15887794 intergenic not near genes chr2L 15887866 intergenic not near genes chr2L_4_15885001 chr2L_15885001 RAL-776 239 chr2L 15906182 15906214 chr2L 15906271 15906303 8 75 0.5 2.5 1.5 3.2 121 chr2L 15906182 intron beat-Ib - chr2L 15906242 intron beat-Ib - chr2L 15906303 intron beat-Ib - chr2L_8_15905001 chr2L_15905001 RAL-776 240 chr2L 15913646 15913664 chr2L 15913716 15913741 14 74 0.5 3.5 2.0 4.7 95 chr2L 15913646 intron beat-Ib - chr2L 15913694 intron beat-Ib - chr2L 15913741 intron beat-Ib - chr2L_14_15910001 chr2L_15910001 RAL-776 241 chr2L 15915653 15915686 chr2L 15915731 15915764 8 78 1.5 5.0 3.2 1.9 111 chr2L 15915653 intron beat-Ib - chr2L 15915708 intron beat-Ib - chr2L 15915764 intron beat-Ib - chr2L_8_15915001 chr2L_15915001 RAL-776 242 chr2L 15956031 15956043 chr2L 15957498 15957510 hobo 5 1465 4.5 4.5 4.5 0.9 1479 chr2L 15956031 intron beat-Ib - chr2L 15956770 intron beat-Ib - chr2L 15957510 intron beat-Ib - chr2L_5_15955001 chr2L_15955001 RAL-776 243 chr2L 16016427 16016458 chr2L 16016504 16016535 8 74 2.0 4.5 3.2 1.9 108 chr2L 16016427 intron beat-Ic + chr2L 16016481 intron beat-Ic + chr2L 16016535 intron beat-Ic + chr2L_8_16015001 chr2L_16015001 RAL-776 244 chr2L 16058126 16058150 chr2L 16058267 16058291 8 141 3.0 0.5 1.8 2.9 165 chr2L 16058126 intron beat-Ia + chr2L 16058208 intron beat-Ia + chr2L 16058291 intron beat-Ia + chr2L_8_16055001 chr2L_16055001 RAL-776 245 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 11 145889 10.5 18.0 14.2 0.7 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_11_16140001 chr2L_16140001 RAL-776 246 chr2L 16141162 16141195 chr2L 16146369 16146402 copia 7 5206 2.0 1.5 1.8 2.5 5240 chr2L 16141162 intergenic not near genes chr2L 16143782 intergenic not near genes chr2L 16146402 intergenic not near genes chr2L_7_16140001 chr2L_16140001 RAL-776 247 chr2L 16150388 16150419 chr2L 16150479 16150507 12 90 3.0 5.0 4.0 2.4 119 chr2L 16150388 intergenic not near genes chr2L 16150448 intergenic not near genes chr2L 16150507 intergenic not near genes chr2L_12_16150001 chr2L_16150001 RAL-776 248 chr2L 16197122 16197153 chr2L 16197798 16197824 9 672 3.0 7.5 5.2 1.5 702 chr2L 16197122 intergenic not near genes chr2L 16197473 intergenic not near genes chr2L 16197824 intergenic not near genes chr2L_9_16195001 chr2L_16195001 RAL-776 249 chr2L 9084337 9084340 chr2L 16217660 16217660 6 7133321 17.0 18.0 17.5 0.3 7133323 chr2L 9084337 intron Toll-4 + chr2L 12650998 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_12650001 chr2L_12650001 RAL-776 250 chr2L 16071771 16071771 chr2L 16217660 16217660 copia 6 145889 10.5 18.0 14.2 0.4 145889 chr2L 16071771 intron beat-Ia + chr2L 16144716 intergenic not near genes chr2L 16217660 intergenic not near genes chr2L_6_16140001 chr2L_16140001 RAL-776 251 chr2L 16226186 16226214 chr2L 16226273 16226298 7 86 4.0 3.5 3.8 1.5 112 chr2L 16226186 intergenic not near genes chr2L 16226242 intergenic not near genes chr2L 16226298 intergenic not near genes chr2L_7_16225001 chr2L_16225001 RAL-776 252 chr2L 16254901 16254911 chr2L 16255157 16255170 4 258 4.0 3.0 3.5 0.9 269 chr2L 16254901 intron PRL-1 - chr2L 16255036 intron PRL-1 - chr2L 16255170 intron PRL-1 - chr2L_4_16255001 chr2L_16255001 RAL-776 253 chr2L 16309163 16309197 chr2L 16309249 16309283 5 85 3.0 4.0 3.5 1.1 120 chr2L 16309163 3` UTR Syx5 + chr2L 16309223 3` UTR Syx5 + chr2L 16309283 intergenic cni -,Syx5 + chr2L_5_16305001 chr2L_16305001 RAL-776 254 chr2L 16384789 16384794 chr2L 16384866 16384871 4 76 7.5 3.0 5.2 0.6 82 chr2L 16384789 intergenic not near genes chr2L 16384830 intergenic not near genes chr2L 16384871 intergenic not near genes chr2L_4_16380001 chr2L_16380001 RAL-776 255 chr2L 16583557 16583577 chr2L 16583691 16583711 4 133 6.0 4.0 5.0 0.7 154 chr2L 16583557 intron CG42389 + chr2L 16583634 intron CG42389 + chr2L 16583711 intron CG42389 + chr2L_4_16580001 chr2L_16580001 RAL-776 256 chr2L 16709093 16709102 chr2L 16709177 16709186 4 84 0.5 3.5 2.0 1.3 93 chr2L 16709093 intron CG31808 - chr2L 16709140 intron CG31808 - chr2L 16709186 intron CG31808 - chr2L_4_16705001 chr2L_16705001 RAL-776 257 chr2L 16927543 16927572 chr2L 16928199 16928211 4 650 2.0 3.5 2.8 1.1 668 chr2L 16927543 intergenic not near genes chr2L 16927877 intergenic not near genes chr2L 16928211 intergenic not near genes chr2L_4_16925001 chr2L_16925001 RAL-776 258 chr2L 16940001 16940013 chr2L 16940079 16940091 4 77 0.5 7.0 3.8 0.8 90 chr2L 16940001 intergenic not near genes chr2L 16940046 intergenic not near genes chr2L 16940091 intergenic not near genes chr2L_4_16940001 chr2L_16940001 RAL-776 259 chr2L 17005413 17005436 chr2L 17005510 17005533 4 97 5.0 6.0 5.5 0.6 120 chr2L 17005413 intergenic not near genes chr2L 17005473 intergenic not near genes chr2L 17005533 intergenic not near genes chr2L_4_17005001 chr2L_17005001 RAL-776 260 chr2L 17120851 17120869 chr2L 17120930 17120948 6 79 3.5 4.0 3.8 1.2 97 chr2L 17120851 intergenic not near genes chr2L 17120900 intergenic not near genes chr2L 17120948 intergenic not near genes chr2L_6_17120001 chr2L_17120001 RAL-776 261 chr2L 17167565 17167595 chr2L 17167806 17167835 pogo 6 241 1.0 3.0 2.0 2.0 270 chr2L 17167565 intron,intron CG34106 +,beat-IIIa + chr2L 17167700 intron,intron CG34106 +,beat-IIIa + chr2L 17167835 intron,intron CG34106 +,beat-IIIa + chr2L_6_17165001 chr2L_17165001 RAL-776 262 chr2L 17238847 17238862 chr2L 17238932 17238947 5 85 4.0 2.0 3.0 1.2 100 chr2L 17238847 intron beat-IIIc - chr2L 17238897 intron beat-IIIc - chr2L 17238947 intron beat-IIIc - chr2L_5_17235001 chr2L_17235001 RAL-776 263 chr2L 17273200 17273230 chr2L 17277983 17278005 F-element 12 4781 2.5 10.0 6.2 1.7 4805 chr2L 17273200 intergenic not near genes chr2L 17275602 intergenic not near genes chr2L 17278005 intergenic not near genes chr2L_12_17275001 chr2L_17275001 RAL-776 264 chr2L 17722865 17722892 chr2L 17723908 17723935 6 1043 4.5 4.5 4.5 1.1 1070 chr2L 17722865 intron CadN - chr2L 17723400 intron CadN - chr2L 17723935 intron CadN - chr2L_6_17720001 chr2L_17720001 RAL-776 265 chr2L 17723790 17723797 chr2L 17723882 17723890 4 92 1.0 2.0 1.5 1.6 100 chr2L 17723790 intron CadN - chr2L 17723840 intron CadN - chr2L 17723890 intron CadN - chr2L_4_17720001 chr2L_17720001 RAL-776 266 chr2L 17722130 17722165 chr2L 17724985 17725020 11 2855 22.5 17.0 19.8 0.5 2890 chr2L 17722130 intron CadN - chr2L 17723575 intron CadN - chr2L 17725020 intron CadN - chr2L_11_17720001 chr2L_17720001 RAL-776 267 chr2L 17741960 17741985 chr2L 17742036 17742061 4 74 5.0 4.0 4.5 0.7 101 chr2L 17741960 intron CadN - chr2L 17742010 intron CadN - chr2L 17742061 intron CadN - chr2L_4_17740001 chr2L_17740001 RAL-776 268 chr2L 17819920 17819949 chr2L 17825123 17825152 copia 10 5203 1.0 3.5 2.2 3.1 5232 chr2L 17819920 intron CadN2 - chr2L 17822536 intron CadN2 - chr2L 17825152 intron CadN2 - chr2L_10_17820001 chr2L_17820001 RAL-776 269 chr2L 17835204 17835233 chr2L 17837392 17837421 6 2187 12.5 12.5 12.5 0.4 2217 chr2L 17835204 intron CadN2 - chr2L 17836312 intron CadN2 - chr2L 17837421 intron CadN2 - chr2L_6_17835001 chr2L_17835001 RAL-776 270 chr2L 17852711 17852739 chr2L 17852802 17852828 7 91 2.0 2.5 2.2 2.2 117 chr2L 17852711 intron CadN2 - chr2L 17852770 intron CadN2 - chr2L 17852828 intron CadN2 - chr2L_7_17850001 chr2L_17850001 RAL-776 271 chr2L 17944416 17944450 chr2L 17944579 17944604 8 161 5.5 9.5 7.5 0.9 188 chr2L 17944416 intergenic not near genes chr2L 17944510 intergenic not near genes chr2L 17944604 intergenic not near genes chr2L_8_17940001 chr2L_17940001 RAL-776 272 chr2L 18051874 18051909 chr2L 18061021 18061056 roo 9 9145 3.5 3.0 3.2 2.1 9182 chr2L 18051874 intron rdo + chr2L 18056465 intron rdo + chr2L 18061056 intron rdo + chr2L_9_18055001 chr2L_18055001 RAL-776 273 chr2L 18078274 18078307 chr2L 18078360 18078393 7 84 9.0 9.5 9.2 0.7 119 chr2L 18078274 5` UTR Arr1 + chr2L 18078334 5` UTR Arr1 + chr2L 18078393 exon Arr1 + chr2L_7_18075001 chr2L_18075001 RAL-776 274 chr2L 18079817 18079843 chr2L 18079902 18079929 4 85 3.0 6.0 4.5 0.7 112 chr2L 18079817 intron Arr1 + chr2L 18079873 intron Arr1 + chr2L 18079929 intron Arr1 + chr2L_4_18075001 chr2L_18075001 RAL-776 275 chr2L 18111245 18111262 chr2L 18111336 18111353 5 91 2.5 3.0 2.8 1.3 108 chr2L 18111245 intergenic not near genes chr2L 18111299 intergenic not near genes chr2L 18111353 intergenic not near genes chr2L_5_18110001 chr2L_18110001 RAL-776 276 chr2L 18121646 18121663 chr2L 18121792 18121809 4 146 5.5 7.5 6.5 0.5 163 chr2L 18121646 intron CG5758 + chr2L 18121728 intron CG5758 + chr2L 18121809 intron CG5758 + chr2L_4_18120001 chr2L_18120001 RAL-776 277 chr2L 18315251 18315282 chr2L 18315330 18315360 5 79 7.5 7.5 7.5 0.6 109 chr2L 18315251 intergenic not near genes chr2L 18315306 intergenic not near genes chr2L 18315360 intergenic not near genes chr2L_5_18315001 chr2L_18315001 RAL-776 278 chr2L 18393980 18394010 chr2L 18394060 18394090 4 80 8.5 9.0 8.8 0.4 110 chr2L 18393980 intergenic not near genes chr2L 18394035 intergenic not near genes chr2L 18394090 intergenic not near genes chr2L_4_18390001 chr2L_18390001 RAL-776 279 chr2L 18408023 18408051 chr2L 18412807 18412835 Doc 6 4783 2.0 0.0 1.0 3.0 4812 chr2L 18408023 intergenic not near genes chr2L 18410429 intergenic not near genes chr2L 18412835 intergenic not near genes chr2L_6_18410001 chr2L_18410001 RAL-776 280 chr2L 18476531 18476553 chr2L 18476620 18476642 4 89 7.0 6.5 6.8 0.5 111 chr2L 18476531 intron CG10283 - chr2L 18476586 intron CG10283 - chr2L 18476642 intron CG10283 - chr2L_4_18475001 chr2L_18475001 RAL-776 281 chr2L 18584760 18584889 chr2L 18584845 18585141 6 145 6.5 3.5 5.0 1.0 381 chr2L 18584760 intron Pde11 - chr2L 18584950 intron Pde11 - chr2L 18585141 intron Pde11 - chr2L_6_18580001 chr2L_18580001 RAL-776 282 chr2L 18617726 18617748 chr2L 18617999 18618021 7 273 14.0 13.5 13.8 0.5 295 chr2L 18617726 intron MESR3 + chr2L 18617874 intron MESR3 + chr2L 18618021 intron MESR3 + chr2L_7_18615001 chr2L_18615001 RAL-776 283 chr2L 18654009 18654031 chr2L 18654161 18654183 4 152 17.5 12.5 15.0 0.2 174 chr2L 18654009 intron MESR3 + chr2L 18654096 intron MESR3 + chr2L 18654183 intron MESR3 + chr2L_4_18650001 chr2L_18650001 RAL-776 284 chr2L 18659930 18659962 chr2L 18660013 18660046 7 83 3.5 9.5 6.5 0.9 116 chr2L 18659930 intron MESR3 + chr2L 18659988 intron MESR3 + chr2L 18660046 intron MESR3 + chr2L_7_18655001 chr2L_18655001 RAL-776 285 chr2L 18699214 18699240 chr2L 18699289 18699302 9 71 12.5 12.5 12.5 0.7 88 chr2L 18699214 exon CG10341 + chr2L 18699258 exon CG10341 + chr2L 18699302 exon CG10341 + chr2L_9_18695001 chr2L_18695001 RAL-776 286 chr2L 18812556 18812589 chr2L 18812819 18812852 5 262 1.0 5.5 3.2 1.2 296 chr2L 18812556 intergenic CG17325 +,CG42305 + chr2L 18812704 5` UTR,5` UTR CG17325 +,CG42305 + chr2L 18812852 5` UTR,5` UTR CG17325 +,CG42305 + chr2L_5_18810001 chr2L_18810001 RAL-776 287 chr2L 18816737 18816769 chr2L 18816867 18816883 5 127 16.0 10.0 13.0 0.4 146 chr2L 18816737 intergenic not near genes chr2L 18816810 intergenic not near genes chr2L 18816883 intergenic not near genes chr2L_5_18815001 chr2L_18815001 RAL-776 288 chr2L 18819540 18819557 chr2L 18819618 18819635 5 78 2.0 6.5 4.2 1.0 95 chr2L 18819540 intron CG17324 + chr2L 18819588 intron CG17324 + chr2L 18819635 intron CG17324 + chr2L_5_18815001 chr2L_18815001 RAL-776 289 chr2L 18849974 18850008 chr2L 18850051 18850085 8 76 9.5 11.0 10.2 0.7 111 chr2L 18849974 intron CG17321 + chr2L 18850030 intron CG17321 + chr2L 18850085 intron CG17321 + chr2L_8_18850001 chr2L_18850001 RAL-776 290 chr2L 18981761 18981772 chr2L 18981830 18981839 4 72 10.0 10.0 10.0 0.4 78 chr2L 18981761 intron Swip-1 - chr2L 18981800 intron Swip-1 - chr2L 18981839 intron Swip-1 - chr2L_4_18980001 chr2L_18980001 RAL-776 291 chr2L 19024096 19024097 chr2L 21768291 21768294 6 2744195 9.0 26.5 17.8 0.3 2744198 chr2L 19024096 3` UTR CR43700 - chr2L 20396195 intron CG10947 - chr2L 21768294 intron CG31612 - chr2L_6_20395001 chr2L_20395001 RAL-776 292 chr2L 19147279 19147294 chr2L 19147387 19147403 4 112 7.5 4.0 5.8 0.6 124 chr2L 19147279 intron brat + chr2L 19147341 intron brat + chr2L 19147403 intron brat + chr2L_4_19145001 chr2L_19145001 RAL-776 293 chr2L 19199671 19199695 chr2L 19199743 19199772 11 71 10.5 3.5 7.0 1.4 101 chr2L 19199671 intron drl + chr2L 19199722 intron drl + chr2L 19199772 intron drl + chr2L_11_19195001 chr2L_19195001 RAL-776 294 chr2L 19226913 19226931 chr2L 19226990 19227017 4 84 8.0 5.5 6.8 0.5 104 chr2L 19226913 intergenic not near genes chr2L 19226965 intergenic not near genes chr2L 19227017 intergenic not near genes chr2L_4_19225001 chr2L_19225001 RAL-776 295 chr2L 19309625 19309651 chr2L 19309704 19309730 5 79 10.0 6.5 8.2 0.5 105 chr2L 19309625 intergenic not near genes chr2L 19309678 intergenic not near genes chr2L 19309730 intergenic not near genes chr2L_5_19305001 chr2L_19305001 RAL-776 296 chr2L 19331136 19331145 chr2L 19331238 19331243 4 101 6.0 14.0 10.0 0.4 107 chr2L 19331136 intergenic not near genes chr2L 19331190 intergenic not near genes chr2L 19331243 intergenic not near genes chr2L_4_19330001 chr2L_19330001 RAL-776 297 chr2L 19337565 19337579 chr2L 19338132 19338143 5 565 4.5 4.5 4.5 0.9 578 chr2L 19337565 intergenic not near genes chr2L 19337854 intergenic not near genes chr2L 19338143 intergenic not near genes chr2L_5_19335001 chr2L_19335001 RAL-776 298 chr2L 19345018 19345045 chr2L 19357227 19357254 blood 10 12208 7.5 4.0 5.8 1.5 12236 chr2L 19345018 intron dnt - chr2L 19351136 intron dnt - chr2L 19357254 intron dnt - chr2L_10_19350001 chr2L_19350001 RAL-776 299 chr2L 19357548 19357569 chr2L 19357636 19357657 7 89 4.5 5.0 4.8 1.2 109 chr2L 19357548 intron dnt - chr2L 19357602 intron dnt - chr2L 19357657 intron dnt - chr2L_7_19355001 chr2L_19355001 RAL-776 300 chr2L 19378349 19378365 chr2L 19378432 19378448 4 83 9.0 14.0 11.5 0.3 99 chr2L 19378349 intergenic not near genes chr2L 19378398 intergenic not near genes chr2L 19378448 intergenic not near genes chr2L_4_19375001 chr2L_19375001 RAL-776 301 chr2L 19389667 19389695 chr2L 19389743 19389771 6 75 6.5 7.0 6.8 0.8 104 chr2L 19389667 intron CG17549 - chr2L 19389719 intron CG17549 - chr2L 19389771 intron CG17549 - chr2L_6_19385001 chr2L_19385001 RAL-776 302 chr2L 19393960 19393995 chr2L 19394074 19394098 9 112 7.0 3.5 5.2 1.5 138 chr2L 19393960 intron CG17544 - chr2L 19394029 intron CG17544 - chr2L 19394098 intron CG17544 - chr2L_9_19390001 chr2L_19390001 RAL-776 303 chr2L 19405618 19405642 chr2L 19405708 19405732 6 90 0.5 1.0 0.8 3.3 114 chr2L 19405618 intron Pax - chr2L 19405675 intron Pax - chr2L 19405732 intron Pax - chr2L_6_19405001 chr2L_19405001 RAL-776 304 chr2L 19407717 19407740 chr2L 19407914 19407937 6 197 12.0 9.5 10.8 0.5 220 chr2L 19407717 intron Pax - chr2L 19407827 intron Pax - chr2L 19407937 intron Pax - chr2L_6_19405001 chr2L_19405001 RAL-776 305 chr2L 19441066 19441087 chr2L 19441143 19441164 7 77 10.5 11.0 10.8 0.6 98 chr2L 19441066 intron CG10237 - chr2L 19441115 intron CG10237 - chr2L 19441164 5` UTR CG10237 - chr2L_7_19440001 chr2L_19440001 RAL-776 306 chr2L 19559405 19559415 chr2L 19559480 19559490 4 76 18.0 10.5 14.2 0.3 85 chr2L 19559405 exon Tep5 + chr2L 19559448 exon Tep5 + chr2L 19559490 exon Tep5 + chr2L_4_19555001 chr2L_19555001 RAL-776 307 chr2L 19560834 19560862 chr2L 19560914 19560942 4 80 10.0 16.0 13.0 0.3 108 chr2L 19560834 intron Tep5 + chr2L 19560888 exon Tep5 + chr2L 19560942 exon Tep5 + chr2L_4_19560001 chr2L_19560001 RAL-776 308 chr2L 19562545 19562554 chr2L 19562625 19562634 9 79 7.5 7.0 7.2 1.1 89 chr2L 19562545 intron Tep5 + chr2L 19562590 intron Tep5 + chr2L 19562634 exon Tep5 + chr2L_9_19560001 chr2L_19560001 RAL-776 309 chr2L 19620096 19620126 chr2L 19621084 19621107 jockey 9 986 1.0 4.5 2.8 2.4 1011 chr2L 19620096 intron Lar + chr2L 19620602 intron Lar + chr2L 19621107 intron Lar + chr2L_9_19620001 chr2L_19620001 RAL-776 310 chr2L 19652572 19652598 chr2L 19674006 19674032 opus 7 21434 5.0 1.5 3.2 1.7 21460 chr2L 19652572 intron Lar + chr2L 19663302 intron Lar + chr2L 19674032 intron Lar + chr2L_7_19660001 chr2L_19660001 RAL-776 311 chr2L 19689065 19689089 chr2L 19689168 19689192 9 103 4.0 1.5 2.8 2.4 127 chr2L 19689065 intron Lar + chr2L 19689128 intron Lar + chr2L 19689192 intron Lar + chr2L_9_19685001 chr2L_19685001 RAL-776 312 chr2L 19703535 19703569 chr2L 19712671 19712705 roo 14 9136 3.0 3.0 3.0 3.5 9170 chr2L 19703535 intron Lar + chr2L 19708120 intron Lar + chr2L 19712705 intron Lar + chr2L_14_19705001 chr2L_19705001 RAL-776 313 chr2L 19737361 19737389 chr2L 19740822 19740845 1360 13 3464 2.5 3.5 3.0 3.2 3484 chr2L 19737361 intergenic Nf-YB + chr2L 19739103 intergenic not near genes chr2L 19740845 intergenic not near genes chr2L_13_19735001 chr2L_19735001 RAL-776 314 chr2L 19773165 19773189 chr2L 19773252 19773276 4 87 5.0 4.0 4.5 0.7 111 chr2L 19773165 intergenic not near genes chr2L 19773220 intergenic not near genes chr2L 19773276 intergenic not near genes chr2L_4_19770001 chr2L_19770001 RAL-776 315 chr2L 19837276 19837310 chr2L 19837355 19837390 17 80 2.5 5.5 4.0 3.4 114 chr2L 19837276 intron sick + chr2L 19837333 intron sick + chr2L 19837390 intron sick + chr2L_17_19835001 chr2L_19835001 RAL-776 316 chr2L 19846248 19846273 chr2L 19846329 19846353 8 81 2.5 7.0 4.8 1.4 105 chr2L 19846248 intron sick + chr2L 19846300 intron sick + chr2L 19846353 intron sick + chr2L_8_19845001 chr2L_19845001 RAL-776 317 chr2L 19865425 19865443 chr2L 19865511 19865528 4 86 6.0 5.0 5.5 0.6 103 chr2L 19865425 intron sick + chr2L 19865476 intron sick + chr2L 19865528 intron sick + chr2L_4_19865001 chr2L_19865001 RAL-776 318 chr2L 19878986 19878996 chr2L 19879195 19879205 5 209 2.5 5.5 4.0 1.0 219 chr2L 19878986 intron sick + chr2L 19879096 intron sick + chr2L 19879205 intron sick + chr2L_5_19875001 chr2L_19875001 RAL-776 319 chr2L 19902335 19902369 chr2L 19902461 19902493 13 125 7.0 9.5 8.2 1.4 158 chr2L 19902335 intron sick + chr2L 19902414 intron sick + chr2L 19902493 intron sick + chr2L_13_19900001 chr2L_19900001 RAL-776 320 chr2L 19964833 19964848 chr2L 19964919 19964934 6 85 12.5 8.0 10.2 0.5 101 chr2L 19964833 intron CG10680 + chr2L 19964884 exon CG10680 + chr2L 19964934 exon CG10680 + chr2L_6_19960001 chr2L_19960001 RAL-776 321 chr2L 19964849 19964864 chr2L 19964916 19964949 8 80 9.5 8.0 8.8 0.8 100 chr2L 19964849 exon CG10680 + chr2L 19964899 exon CG10680 + chr2L 19964949 exon CG10680 + chr2L_8_19960001 chr2L_19960001 RAL-776 322 chr2L 20005876 20005901 chr2L 20010952 20010977 flea 4 5075 0.5 1.0 0.8 2.2 5101 chr2L 20005876 intron CG43861 - chr2L 20008426 intron CG43861 - chr2L 20010977 intron CG43861 - chr2L_4_20005001 chr2L_20005001 RAL-776 323 chr2L 20085466 20085496 chr2L 20085556 20085588 8 91 7.5 6.0 6.8 1.0 122 chr2L 20085466 intron neb + chr2L 20085527 intron neb + chr2L 20085588 intron neb + chr2L_8_20085001 chr2L_20085001 RAL-776 324 chr2L 20269612 20269631 chr2L 20269836 20269855 4 222 4.5 4.0 4.2 0.8 243 chr2L 20269612 intergenic not near genes chr2L 20269734 intergenic not near genes chr2L 20269855 intergenic not near genes chr2L_4_20265001 chr2L_20265001 RAL-776 325 chr2L 20271262 20271269 chr2L 20271345 20271352 4 81 10.5 6.5 8.5 0.4 90 chr2L 20271262 intergenic not near genes chr2L 20271307 intergenic not near genes chr2L 20271352 intergenic not near genes chr2L_4_20270001 chr2L_20270001 RAL-776 326 chr2L 20272119 20272142 chr2L 20282827 20282852 copia 5 10710 4.0 4.0 4.0 1.0 10733 chr2L 20272119 intergenic not near genes chr2L 20277486 intergenic not near genes chr2L 20282852 intergenic not near genes chr2L_5_20275001 chr2L_20275001 RAL-776 327 chr2L 20296506 20296527 chr2L 20296587 20296608 10 80 1.5 3.5 2.5 2.9 102 chr2L 20296506 intergenic CR43414 - chr2L 20296557 intergenic CR43414 - chr2L 20296608 intergenic CR43414 - chr2L_10_20295001 chr2L_20295001 RAL-776 328 chr2L 20299415 20299442 chr2L 20299534 20299565 4 120 9.0 16.0 12.5 0.3 150 chr2L 20299415 intergenic not near genes chr2L 20299490 intergenic not near genes chr2L 20299565 intergenic not near genes chr2L_4_20295001 chr2L_20295001 RAL-776 329 chr2L 20310883 20310920 chr2L 20310962 20310999 4 79 0.0 0.5 0.2 3.3 116 chr2L 20310883 intergenic spir + chr2L 20310941 intergenic spir + chr2L 20310999 intergenic spir + chr2L_4_20310001 chr2L_20310001 RAL-776 330 chr2L 20429674 20429686 chr2L 20429788 20429800 6 113 6.5 5.5 6.0 0.9 126 chr2L 20429674 intron CG31688 + chr2L 20429737 intron CG31688 + chr2L 20429800 intron CG31688 + chr2L_6_20425001 chr2L_20425001 RAL-776 331 chr2L 20431579 20431599 chr2L 20431705 20431725 5 126 8.0 2.0 5.0 0.8 146 chr2L 20431579 intron CG31688 + chr2L 20431652 intron CG31688 + chr2L 20431725 intron CG31688 + chr2L_5_20430001 chr2L_20430001 RAL-776 332 chr2L 20568669 20568680 chr2L 20569059 20569070 X-element 7 390 3.5 2.0 2.8 1.8 401 chr2L 20568669 intron CR45347 + chr2L 20568870 intron CR45347 + chr2L 20569070 intron CR45347 + chr2L_7_20565001 chr2L_20565001 RAL-776 333 chr2L 20576220 20576252 chr2L 20583688 20583717 blood 9 7466 6.0 2.5 4.2 1.7 7497 chr2L 20576220 intergenic CR45347 + chr2L 20579968 intergenic not near genes chr2L 20583717 3` UTR CR44909 - chr2L_9_20575001 chr2L_20575001 RAL-776 334 chr2L 20623933 20623941 chr2L 20624001 20624019 6 77 5.0 5.5 5.2 1.0 86 chr2L 20623933 intron CR44909 - chr2L 20623976 intron CR44909 - chr2L 20624019 intron CR44909 - chr2L_6_20620001 chr2L_20620001 RAL-776 335 chr2L 20711689 20711712 chr2L 20711779 20711800 10 89 6.0 9.0 7.5 1.2 111 chr2L 20711689 intron,5` UTR Hr38 -,CR44188 + chr2L 20711744 intron,5` UTR Hr38 -,CR44188 + chr2L 20711800 intron,5` UTR Hr38 -,CR44188 + chr2L_10_20710001 chr2L_20710001 RAL-776 336 chr2L 20819115 20819140 chr2L 20819199 20819224 5 84 4.0 4.5 4.2 1.0 109 chr2L 20819115 intergenic not near genes chr2L 20819170 intergenic not near genes chr2L 20819224 intergenic not near genes chr2L_5_20815001 chr2L_20815001 RAL-776 337 chr2L 20840032 20840058 chr2L 20840236 20840270 7 205 6.5 3.5 5.0 1.2 238 chr2L 20840032 intergenic not near genes chr2L 20840151 intergenic not near genes chr2L 20840270 intergenic CG31676 + chr2L_7_20840001 chr2L_20840001 RAL-776 338 chr2L 20901474 20901483 chr2L 20902629 20902647 1360 4 1162 1.0 1.5 1.2 1.8 1173 chr2L 20901474 intron,intron CG43739 -,sky - chr2L 20902060 intron,intron CG43739 -,sky - chr2L 20902647 intron,intron CG43739 -,sky - chr2L_4_20900001 chr2L_20900001 RAL-776 339 chr2L 20976653 20976680 chr2L 20981467 20981494 X-element 5 4815 1.0 2.5 1.8 1.8 4841 chr2L 20976653 intron CG42238 - chr2L 20979074 intron CG42238 - chr2L 20981494 intron CG42238 - chr2L_5_20975001 chr2L_20975001 RAL-776 340 chr2L 20984396 20984630 chr2L 20984680 20984711 10 183 1.0 1.0 1.0 5.0 315 chr2L 20984396 intron CG42238 - chr2L 20984554 intron CG42238 - chr2L 20984711 intron CG42238 - chr2L_10_20980001 chr2L_20980001 RAL-776 341 chr2L 20991036 20991069 chr2L 20991114 20991147 14 77 8.5 9.5 9.0 1.4 111 chr2L 20991036 intron CG42238 - chr2L 20991092 intron CG42238 - chr2L 20991147 intron CG42238 - chr2L_14_20990001 chr2L_20990001 RAL-776 342 chr2L 21020272 21020309 chr2L 21023948 21023986 NOF 11 3676 5.0 0.5 2.8 2.9 3714 chr2L 21020272 intron CG42238 - chr2L 21022129 intron CG42238 - chr2L 21023986 intron CG42238 - chr2L_11_21020001 chr2L_21020001 RAL-776 343 chr2L 21041144 21041166 chr2L 21049404 21049427 Tirant 6 8260 2.0 4.0 3.0 1.5 8283 chr2L 21041144 intron CG42238 - chr2L 21045286 intron CG42238 - chr2L 21049427 intron CG42238 - chr2L_6_21045001 chr2L_21045001 RAL-776 344 chr2L 21074920 21074943 chr2L 21075010 21075034 6 91 2.5 3.5 3.0 1.5 114 chr2L 21074920 intergenic tadr + chr2L 21074977 intergenic tadr + chr2L 21075034 intergenic tadr + chr2L_6_21070001 chr2L_21070001 RAL-776 345 chr2L 21113684 21113718 chr2L 21113777 21113811 8 93 3.5 4.0 3.8 1.7 127 chr2L 21113684 intron Nhe2 + chr2L 21113748 intron Nhe2 + chr2L 21113811 intron Nhe2 + chr2L_8_21110001 chr2L_21110001 RAL-776 346 chr2L 21124532 21124551 chr2L 21124617 21124637 5 85 6.0 4.5 5.2 0.8 105 chr2L 21124532 intron Nhe2 + chr2L 21124584 intron Nhe2 + chr2L 21124637 intron Nhe2 + chr2L_5_21120001 chr2L_21120001 RAL-776 347 chr2L 21233979 21233995 chr2L 21234076 21234092 4 97 2.5 3.5 3.0 1.0 113 chr2L 21233979 intron,5` UTR CG31626 -,CR45713 + chr2L 21234036 intron CG31626 - chr2L 21234092 intron CG31626 - chr2L_4_21230001 chr2L_21230001 RAL-776 348 chr2L 21251195 21251219 chr2L 21251720 21251747 5 527 4.5 3.0 3.8 1.0 552 chr2L 21251195 intron Hr39 + chr2L 21251471 intron Hr39 + chr2L 21251747 intron Hr39 + chr2L_5_21250001 chr2L_21250001 RAL-776 349 chr2L 21284558 21284578 chr2L 21286389 21286409 9 1831 13.0 29.0 21.0 0.4 1851 chr2L 21284558 intergenic not near genes chr2L 21285484 intergenic not near genes chr2L 21286409 exon Mio - chr2L_9_21285001 chr2L_21285001 RAL-776 350 chr2L 21286604 21286632 chr2L 21286682 21286710 5 77 3.5 2.0 2.8 1.3 106 chr2L 21286604 exon Mio - chr2L 21286657 intron Mio - chr2L 21286710 intron Mio - chr2L_5_21285001 chr2L_21285001 RAL-776 351 chr2L 21597027 21597061 chr2L 21604771 21604804 roo 4 7744 1.5 1.5 1.5 1.6 7777 chr2L 21597027 intergenic not near genes chr2L 21600916 intergenic not near genes chr2L 21604804 intergenic not near genes chr2L_4_21600001 chr2L_21600001 RAL-776 352 chr2L 21274699 21274700 chr2L 21644328 21644329 4 369628 5.5 9.5 7.5 0.5 369630 chr2L 21274699 intron CG8671 + chr2L 21459514 intergenic His4:CG33891 -,His4:CG33893 -,His4:CG33895 -,His4:CG33897 -,His4:CG33899 - chr2L 21644329 intron Ac3 + chr2L_4_21455001 chr2L_21455001 RAL-776 353 chr2L 21819329 21819347 chr2L 21819416 21819422 7 84 1.0 2.5 1.8 2.5 93 chr2L 21819329 intergenic CR44786 + chr2L 21819376 intergenic CR44786 + chr2L 21819422 intergenic CR44786 + chr2L_7_21815001 chr2L_21815001 RAL-776 354 chr2L 21981682 21981714 chr2L 21990847 21990879 roo 14 9164 3.5 2.5 3.0 3.5 9197 chr2L 21981682 exon CG2528 - chr2L 21986280 intron CG2528 - chr2L 21990879 exon CG2528 - chr2L_14_21985001 chr2L_21985001 RAL-776 355 chr2L 22011917 22011949 chr2L 22011998 22012030 8 81 0.5 4.0 2.2 2.5 113 chr2L 22011917 intergenic not near genes chr2L 22011974 intergenic not near genes chr2L 22012030 intergenic not near genes chr2L_8_22010001 chr2L_22010001 RAL-776 356 chr2L 22212138 22212161 chr2L 22212685 22212708 5 547 1.0 1.5 1.2 2.3 570 chr2L 22212138 intron Ir40a - chr2L 22212423 intron Ir40a - chr2L 22212708 intron Ir40a - chr2L_5_22210001 chr2L_22210001 RAL-776 357 chr2L 22325305 22325331 chr2L 22325382 22325408 9 76 4.5 4.0 4.2 1.7 103 chr2L 22325305 intron CG17018 + chr2L 22325356 intron CG17018 + chr2L 22325408 intron CG17018 + chr2L_9_22325001 chr2L_22325001 RAL-776 358 chr2L 22490518 22490526 chr2L 22497636 22497658 springer 5 7128 0.0 0.0 0.0 5.0 7140 chr2L 22490518 intergenic not near genes chr2L 22494088 intergenic not near genes chr2L 22497658 intergenic not near genes chr2L_5_22490001 chr2L_22490001 RAL-776 359 chr2L 22534603 22534633 chr2L 22534700 22534734 14 100 2.0 3.0 2.5 4.0 131 chr2L 22534603 3` UTR RpL5 - chr2L 22534668 3` UTR RpL5 - chr2L 22534734 3` UTR RpL5 - chr2L_14_22530001 chr2L_22530001 RAL-776 360 chr2L 22548922 22548943 chr2L 22550147 22550168 1360 5 1223 0.0 2.5 1.2 2.3 1246 chr2L 22548922 intergenic CG17490 + chr2L 22549545 intergenic not near genes chr2L 22550168 intergenic CG17493 + chr2L_5_22545001 chr2L_22545001 RAL-776 361 chr2L 22631233 22631260 chr2L 22631321 22631350 10 89 15.5 17.0 16.2 0.6 117 chr2L 22631233 intron CG40006 - chr2L 22631292 intron CG40006 - chr2L 22631350 intron CG40006 - chr2L_10_22630001 chr2L_22630001 RAL-776 362 chr2L 22679804 22679828 chr2L 22684560 22684583 F-element 14 4766 5.0 3.0 4.0 2.8 4779 chr2L 22679804 intron CG40006 - chr2L 22682194 intron CG40006 - chr2L 22684583 intron CG40006 - chr2L_14_22680001 chr2L_22680001 RAL-776 363 chr2L 22695045 22695078 chr2L 22695129 22695161 8 84 17.5 14.0 15.8 0.5 116 chr2L 22695045 intron CG40006 - chr2L 22695103 intron CG40006 - chr2L 22695161 intron CG40006 - chr2L_8_22695001 chr2L_22695001 RAL-776 364 chr2L 22696384 22696415 chr2L 22700846 22700877 11 4463 33.5 41.0 37.2 0.3 4493 chr2L 22696384 intron CG40006 - chr2L 22698630 intron CG40006 - chr2L 22700877 intron CG40006 - chr2L_11_22695001 chr2L_22695001 RAL-776 365 chr2L 22968561 22968583 chr2L 22968655 22968677 5 93 4.0 3.0 3.5 1.1 116 chr2L 22968561 intergenic not near genes chr2L 22968619 intergenic not near genes chr2L 22968677 intergenic not near genes chr2L_5_22965001 chr2L_22965001 RAL-776 366 chr2L 22983943 22983969 chr2L 22984019 22984045 5 72 1.0 2.0 1.5 2.0 102 chr2L 22983943 intron cta + chr2L 22983994 intron cta + chr2L 22984045 intron cta + chr2L_5_22980001 chr2L_22980001 RAL-776 367 chr2R 552756 552777 chr2R 553974 553995 1360 5 1216 3.0 1.5 2.2 1.6 1239 chr2R 552756 intron CG40378 + chr2R 553376 intron CG40378 + chr2R 553995 intron CG40378 + chr2R_5_550001 chr2R_550001 RAL-776 368 chr2R 1317838 1317865 chr2R 1318146 1318153 5 304 23.0 32.5 27.8 0.2 315 chr2R 1317838 intergenic not near genes chr2R 1317996 intergenic not near genes chr2R 1318153 intergenic not near genes chr2R_5_1315001 chr2R_1315001 RAL-776 369 chr2R 1365868 1365887 chr2R 1365978 1365999 6 110 3.0 2.0 2.5 1.7 131 chr2R 1365868 intron l(2)41Ab + chr2R 1365934 intron l(2)41Ab + chr2R 1365999 intron l(2)41Ab + chr2R_6_1365001 chr2R_1365001 RAL-776 370 chr2R 1880704 1880719 chr2R 5639655 5639655 4 3758947 15.5 10.5 13.0 0.3 3758951 chr2R 1880704 intron CG17684 - chr2R 3760180 intergenic not near genes chr2R 5639655 intergenic not near genes chr2R_4_3760001 chr2R_3760001 RAL-776 371 chr2R 2508316 2508338 chr2R 2508454 2508476 4 138 3.0 6.5 4.8 0.7 160 chr2R 2508316 intron MFS17 - chr2R 2508396 intron MFS17 - chr2R 2508476 intron MFS17 - chr2R_4_2505001 chr2R_2505001 RAL-776 372 chr2R 3144097 3144109 chr2R 3393375 3393383 Doc 4 249277 11.5 6.0 8.8 0.4 249286 chr2R 3144097 intron CG42596 + chr2R 3268740 intergenic not near genes chr2R 3393383 intergenic not near genes chr2R_4_3265001 chr2R_3265001 RAL-776 373 chr2R 3291818 3292103 chr2R 3914992 3915264 15 623166 9.0 17.0 13.0 1.1 623446 chr2R 3291818 intergenic not near genes chr2R 3603541 intergenic not near genes chr2R 3915264 intron uex - chr2R_15_3600001 chr2R_3600001 RAL-776 374 chr2R 3818931 3818942 chr2R 3819047 3819058 6 116 14.0 4.5 9.2 0.6 127 chr2R 3818931 intergenic not near genes chr2R 3818994 intergenic not near genes chr2R 3819058 intergenic not near genes chr2R_6_3815001 chr2R_3815001 RAL-776 375 chr2R 4312961 4313124 chr2R 4313043 4313216 11 86 3.5 2.0 2.8 2.9 255 chr2R 4312961 intergenic not near genes chr2R 4313088 intergenic not near genes chr2R 4313216 intergenic not near genes chr2R_11_4310001 chr2R_4310001 RAL-776 376 chr2R 4621321 4621345 chr2R 4621856 4621885 7 539 3.5 3.5 3.5 1.6 564 chr2R 4621321 3` UTR CR44101 - chr2R 4621603 3` UTR CR44101 - chr2R 4621885 3` UTR CR44101 - chr2R_7_4620001 chr2R_4620001 RAL-776 377 chr2R 4622957 4622987 chr2R 4624115 4624144 1360 13 1157 5.5 4.0 4.8 2.2 1187 chr2R 4622957 intergenic CR44101 - chr2R 4623550 intergenic not near genes chr2R 4624144 intergenic not near genes chr2R_13_4620001 chr2R_4620001 RAL-776 378 chr2R 4751714 4751726 chr2R 4751808 4751820 4 94 1.5 1.5 1.5 1.6 106 chr2R 4751714 intron conu + chr2R 4751767 intron conu + chr2R 4751820 intron conu + chr2R_4_4750001 chr2R_4750001 RAL-776 379 chr2R 4916091 4916124 chr2R 4916169 4916202 10 78 2.0 0.5 1.2 4.5 111 chr2R 4916091 intergenic not near genes chr2R 4916146 intergenic not near genes chr2R 4916202 intergenic not near genes chr2R_10_4915001 chr2R_4915001 RAL-776 380 chr2R 4933362 4933392 chr2R 4933926 4933956 8 564 1.0 4.0 2.5 2.3 594 chr2R 4933362 intron Ir41a + chr2R 4933659 intron Ir41a + chr2R 4933956 intron Ir41a + chr2R_8_4930001 chr2R_4930001 RAL-776 381 chr2R 4938506 4938532 chr2R 4938642 4938668 8 136 3.0 4.0 3.5 1.8 162 chr2R 4938506 intron Ir41a + chr2R 4938587 intron Ir41a + chr2R 4938668 intron Ir41a + chr2R_8_4935001 chr2R_4935001 RAL-776 382 chr2R 5125251 5125273 chr2R 5125569 5125591 4 318 0.0 1.0 0.5 2.7 340 chr2R 5125251 intron gus - chr2R 5125421 intron gus - chr2R 5125591 intron gus - chr2R_4_5125001 chr2R_5125001 RAL-776 383 chr2R 5396266 5396276 chr2R 5396504 5396514 5 238 13.5 15.5 14.5 0.3 248 chr2R 5396266 intergenic not near genes chr2R 5396390 intergenic not near genes chr2R 5396514 intergenic not near genes chr2R_5_5395001 chr2R_5395001 RAL-776 384 chr2R 5472381 5472389 chr2R 5472460 5472482 4 86 1.5 1.5 1.5 1.6 101 chr2R 5472381 intron CG30440 - chr2R 5472432 intron CG30440 - chr2R 5472482 intron CG30440 - chr2R_4_5470001 chr2R_5470001 RAL-776 385 chr2R 5473368 5473400 chr2R 5473463 5473495 5 93 2.5 3.0 2.8 1.3 127 chr2R 5473368 intron CG30440 - chr2R 5473432 intron CG30440 - chr2R 5473495 intron CG30440 - chr2R_5_5470001 chr2R_5470001 RAL-776 386 chr2R 5543198 5543219 chr2R 5547282 5547303 invader1 4 4084 0.0 2.5 1.2 1.8 4105 chr2R 5543198 intron CG30438 + chr2R 5545250 intron CG30438 + chr2R 5547303 intron CG30438 + chr2R_4_5545001 chr2R_5545001 RAL-776 387 chr2R 5712309 5712335 chr2R 5712386 5712412 4 76 3.5 0.5 2.0 1.3 103 chr2R 5712309 intron ap - chr2R 5712360 intron ap - chr2R 5712412 intron ap - chr2R_4_5710001 chr2R_5710001 RAL-776 388 chr2R 5861309 5861319 chr2R 5861430 5861440 5 120 1.0 6.0 3.5 1.1 131 chr2R 5861309 intergenic dpr12 + chr2R 5861374 intergenic not near genes chr2R 5861440 intergenic not near genes chr2R_5_5860001 chr2R_5860001 RAL-776 389 chr2R 5869279 5869299 chr2R 5874354 5874373 flea 6 5075 6.5 3.0 4.8 1.0 5094 chr2R 5869279 intergenic not near genes chr2R 5871826 intergenic not near genes chr2R 5874373 intergenic not near genes chr2R_6_5870001 chr2R_5870001 RAL-776 390 chr2R 5869301 5869308 chr2R 5874353 5874384 flea 4 5070 5.5 3.0 4.2 0.8 5083 chr2R 5869301 intergenic not near genes chr2R 5871842 intergenic not near genes chr2R 5874384 intergenic not near genes chr2R_4_5870001 chr2R_5870001 RAL-776 391 chr2R 5878936 5878956 chr2R 5879015 5879036 6 77 1.5 1.0 1.2 2.7 100 chr2R 5878936 intergenic CG44438 - chr2R 5878986 intergenic CG44438 - chr2R 5879036 intergenic CG44438 - chr2R_6_5875001 chr2R_5875001 RAL-776 392 chr2R 6065750 6065782 chr2R 6065862 6065894 9 109 3.0 2.5 2.8 2.4 144 chr2R 6065750 intron CCHa2-R + chr2R 6065822 intron CCHa2-R + chr2R 6065894 exon CCHa2-R + chr2R_9_6065001 chr2R_6065001 RAL-776 393 chr2R 6096719 6096752 chr2R 6101910 6101945 BS 12 5190 5.0 8.0 6.5 1.6 5226 chr2R 6096719 intron EcR - chr2R 6099332 intron EcR - chr2R 6101945 intron EcR - chr2R_12_6095001 chr2R_6095001 RAL-776 394 chr2R 6168193 6168229 chr2R 6168275 6168311 9 81 0.5 1.0 0.8 5.0 118 chr2R 6168193 intron EcR - chr2R 6168252 intron EcR - chr2R 6168311 intron EcR - chr2R_9_6165001 chr2R_6165001 RAL-776 395 chr2R 6538380 6538408 chr2R 6538458 6538486 13 78 3.5 2.0 2.8 3.4 106 chr2R 6538380 intron jing + chr2R 6538433 intron jing + chr2R 6538486 intron jing + chr2R_13_6535001 chr2R_6535001 RAL-776 396 chr2R 6539825 6539852 chr2R 6539948 6539967 4 117 3.0 1.0 2.0 1.3 142 chr2R 6539825 intron jing + chr2R 6539896 intron jing + chr2R 6539967 intron jing + chr2R_4_6535001 chr2R_6535001 RAL-776 397 chr2R 6627641 6627649 chr2R 6627730 6627735 4 90 10.5 13.0 11.8 0.3 94 chr2R 6627641 exon Vha16-1 - chr2R 6627688 intron Vha16-1 - chr2R 6627735 exon Vha16-1 - chr2R_4_6625001 chr2R_6625001 RAL-776 398 chr2R 6632100 6632120 chr2R 6633007 6633027 5 904 21.5 28.0 24.8 0.2 927 chr2R 6632100 exon Vha16-1 - chr2R 6632564 intron Vha16-1 - chr2R 6633027 5` UTR Vha16-1 - chr2R_5_6630001 chr2R_6630001 RAL-776 399 chr2R 6876233 6876251 chr2R 6876310 6876333 6 80 1.5 7.0 4.2 1.2 100 chr2R 6876233 intron,intron CR44169 +,Spn42Da - chr2R 6876283 5` UTR,intron CR44169 +,Spn42Da - chr2R 6876333 5` UTR,intron CR44169 +,Spn42Da - chr2R_6_6875001 chr2R_6875001 RAL-776 400 chr2R 6887326 6887361 chr2R 6887407 6887419 20 75 1.5 4.0 2.8 5.3 93 chr2R 6887326 exon Spn42De + chr2R 6887372 exon Spn42De + chr2R 6887419 exon Spn42De + chr2R_20_6885001 chr2R_6885001 RAL-776 401 chr2R 7139944 7139953 chr2R 7141436 7141444 hopper2 4 1492 4.0 7.5 5.8 0.6 1500 chr2R 7139944 intergenic not near genes chr2R 7140694 intergenic not near genes chr2R 7141444 intergenic not near genes chr2R_4_7140001 chr2R_7140001 RAL-776 402 chr2R 7164273 7164287 chr2R 7164464 7164478 6 190 1.5 5.0 3.2 1.4 205 chr2R 7164273 intron pk + chr2R 7164376 intron pk + chr2R 7164478 intron pk + chr2R_6_7160001 chr2R_7160001 RAL-776 403 chr2R 7196575 7196591 chr2R 7201350 7201366 F-element 4 4775 5.0 2.0 3.5 0.9 4791 chr2R 7196575 intron pk + chr2R 7198970 intron pk + chr2R 7201366 intron pk + chr2R_4_7195001 chr2R_7195001 RAL-776 404 chr2R 7226642 7226671 chr2R 7226733 7226761 10 91 2.0 2.0 2.0 3.3 119 chr2R 7226642 intergenic not near genes chr2R 7226702 intergenic not near genes chr2R 7226761 intergenic not near genes chr2R_10_7225001 chr2R_7225001 RAL-776 405 chr2R 7235820 7235850 chr2R 7240911 7240942 jockey 11 5091 2.0 2.0 2.0 3.7 5122 chr2R 7235820 intergenic not near genes chr2R 7238381 intergenic not near genes chr2R 7240942 intergenic not near genes chr2R_11_7235001 chr2R_7235001 RAL-776 406 chr2R 7310761 7310788 chr2R 7310843 7310870 6 80 7.5 6.0 6.8 0.8 109 chr2R 7310761 intergenic not near genes chr2R 7310816 intergenic not near genes chr2R 7310870 intergenic not near genes chr2R_6_7310001 chr2R_7310001 RAL-776 407 chr2R 7356381 7356402 chr2R 7356644 7356646 6 257 8.5 11.5 10.0 0.5 265 chr2R 7356381 intron Dscam1 - chr2R 7356514 intron Dscam1 - chr2R 7356646 intron Dscam1 - chr2R_6_7355001 chr2R_7355001 RAL-776 408 chr2R 7417904 7418167 chr2R 7417989 7418246 9 81 2.0 3.0 2.5 2.6 342 chr2R 7417904 intergenic not near genes chr2R 7418075 intergenic not near genes chr2R 7418246 intergenic not near genes chr2R_9_7415001 chr2R_7415001 RAL-776 409 chr2R 7551685 7551719 chr2R 7551776 7551810 15 89 5.0 3.0 4.0 3.0 125 chr2R 7551685 intron Corin + chr2R 7551748 intron Corin + chr2R 7551810 intron Corin + chr2R_15_7550001 chr2R_7550001 RAL-776 410 chr2R 7677425 7677451 chr2R 7677555 7677581 10 129 4.0 2.0 3.0 2.5 156 chr2R 7677425 3` UTR CG1399 - chr2R 7677503 3` UTR CG1399 - chr2R 7677581 3` UTR CG1399 - chr2R_10_7675001 chr2R_7675001 RAL-776 411 chr2R 7692011 7692035 chr2R 7692092 7692116 4 81 0.0 1.5 0.8 2.2 105 chr2R 7692011 intron CG1399 - chr2R 7692064 intron CG1399 - chr2R 7692116 intron CG1399 - chr2R_4_7690001 chr2R_7690001 RAL-776 412 chr2R 7714085 7714117 chr2R 7714161 7714193 14 75 2.0 0.5 1.2 6.4 108 chr2R 7714085 exon CG1942 + chr2R 7714139 3` UTR CG1942 + chr2R 7714193 intergenic CG1942 + chr2R_14_7710001 chr2R_7710001 RAL-776 413 chr2R 7815678 7815705 chr2R 7822147 7822174 Burdock 7 6468 5.0 5.5 5.2 1.1 6496 chr2R 7815678 intergenic CG1882 + chr2R 7818926 intergenic not near genes chr2R 7822174 3` UTR cathD - chr2R_7_7815001 chr2R_7815001 RAL-776 414 chr2R 7869192 7869210 chr2R 7873978 7873996 Doc 9 4785 5.5 3.0 4.2 1.7 4804 chr2R 7869192 intron Dgk - chr2R 7871594 intron Dgk - chr2R 7873996 intron Dgk - chr2R_9_7870001 chr2R_7870001 RAL-776 415 chr2R 7997444 7997451 chr2R 7997550 7997557 4 106 2.0 1.0 1.5 1.6 113 chr2R 7997444 intron Hey - chr2R 7997500 intron Hey - chr2R 7997557 intron Hey - chr2R_4_7995001 chr2R_7995001 RAL-776 416 chr2R 8089258 8089281 chr2R 8089344 8089367 4 86 3.0 3.5 3.2 1.0 109 chr2R 8089258 3` UTR sut2 + chr2R 8089312 intergenic sut2 +,sut3 + chr2R 8089367 intergenic sut2 +,sut3 + chr2R_4_8085001 chr2R_8085001 RAL-776 417 chr2R 8160934 8160952 chr2R 8161024 8161042 1360 12 89 4.5 10.5 7.5 1.4 108 chr2R 8160934 intron CG8708 - chr2R 8160988 intron CG8708 - chr2R 8161042 intron CG8708 - chr2R_12_8160001 chr2R_8160001 RAL-776 418 chr2R 8249583 8249598 chr2R 8249665 8249680 6 82 2.0 0.0 1.0 3.0 97 chr2R 8249583 5` UTR CG44439 - chr2R 8249632 intergenic CG44439 - chr2R 8249680 intergenic CG44439 - chr2R_6_8245001 chr2R_8245001 RAL-776 419 chr2R 8330864 8330892 chr2R 8331348 8331378 roo 8 486 2.0 5.0 3.5 1.8 514 chr2R 8330864 intron pdm3 + chr2R 8331121 intron pdm3 + chr2R 8331378 intron pdm3 + chr2R_8_8330001 chr2R_8330001 RAL-776 420 chr2R 8398232 8398242 chr2R 8403007 8403023 Doc 4 4780 5.0 4.5 4.8 0.7 4791 chr2R 8398232 intron CG2121 - chr2R 8400628 intron CG2121 - chr2R 8403023 intron CG2121 - chr2R_4_8400001 chr2R_8400001 RAL-776 421 chr2R 8588731 8588754 chr2R 8588968 8588986 7 234 19.5 14.0 16.8 0.4 255 chr2R 8588731 intergenic not near genes chr2R 8588858 intergenic not near genes chr2R 8588986 intergenic not near genes chr2R_7_8585001 chr2R_8585001 RAL-776 422 chr2R 8658259 8658271 chr2R 8658305 8658316 6 61 3.0 3.0 3.0 1.5 57 chr2R 8658259 intron ptc + chr2R 8658288 intron ptc + chr2R 8658316 intron ptc + chr2R_6_8655001 chr2R_8655001 RAL-776 423 chr2R 8722763 8722788 chr2R 8723004 8723008 pogo 13 235 5.0 4.0 4.5 2.4 245 chr2R 8722763 intron CG14767 - chr2R 8722886 intron CG14767 - chr2R 8723008 intron CG14767 - chr2R_13_8720001 chr2R_8720001 RAL-776 424 chr2R 8768208 8768218 chr2R 8768284 8768296 5 77 2.0 7.0 4.5 0.9 88 chr2R 8768208 intergenic CR44278 - chr2R 8768252 intergenic CR44278 - chr2R 8768296 3` UTR CR44278 - chr2R_5_8765001 chr2R_8765001 RAL-776 425 chr2R 8808291 8808311 chr2R 8808370 8808390 8 79 1.5 3.0 2.2 2.5 99 chr2R 8808291 intron sns + chr2R 8808340 intron sns + chr2R 8808390 intron sns + chr2R_8_8805001 chr2R_8805001 RAL-776 426 chr2R 8941572 8941600 chr2R 8941665 8941693 10 93 0.5 2.5 1.5 4.0 121 chr2R 8941572 intergenic CR44273 +,CG13748 + chr2R 8941632 5` UTR CR44273 + chr2R 8941693 5` UTR CR44273 + chr2R_10_8940001 chr2R_8940001 RAL-776 427 chr2R 8966150 8966181 chr2R 8966240 8966271 5 87 1.5 1.5 1.5 2.0 121 chr2R 8966150 intron CG8216 - chr2R 8966210 intron CG8216 - chr2R 8966271 intron CG8216 - chr2R_5_8965001 chr2R_8965001 RAL-776 428 chr2R 9151307 9151335 chr2R 9157777 9157805 Burdock 14 6470 3.0 1.5 2.2 4.4 6498 chr2R 9151307 3` UTR CG30345 + chr2R 9154556 intergenic not near genes chr2R 9157805 intergenic CG8008 - chr2R_14_9150001 chr2R_9150001 RAL-776 429 chr2R 9161975 9162002 chr2R 9162060 9162087 11 85 3.5 3.5 3.5 2.4 112 chr2R 9161975 5` UTR CR44283 + chr2R 9162031 intergenic CG8046 -,CR44283 + chr2R 9162087 3` UTR CG8046 - chr2R_11_9160001 chr2R_9160001 RAL-776 430 chr2R 9191905 9191937 chr2R 9191990 9192023 6 85 5.5 1.5 3.5 1.3 118 chr2R 9191905 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9191964 5` UTR,5` UTR CG45085 -,CG8026 - chr2R 9192023 5` UTR,5` UTR CG45085 -,CG8026 - chr2R_6_9190001 chr2R_9190001 RAL-776 431 chr2R 9212694 9212719 chr2R 9213179 9213205 roo 9 482 3.0 8.0 5.5 1.4 511 chr2R 9212694 intergenic CR45309 + chr2R 9212950 intergenic CR45309 + chr2R 9213205 5` UTR CR45309 + chr2R_9_9210001 chr2R_9210001 RAL-776 432 chr2R 9302735 9302766 chr2R 9302821 9302852 13 85 1.5 6.0 3.8 2.7 117 chr2R 9302735 3` UTR Drep-2 + chr2R 9302794 3` UTR Drep-2 + chr2R 9302852 3` UTR Myd88 - chr2R_13_9300001 chr2R_9300001 RAL-776 433 chr2R 9408229 9408253 chr2R 9408312 9408336 8 83 3.5 5.5 4.5 1.5 107 chr2R 9408229 intron wun - chr2R 9408282 intron wun - chr2R 9408336 intron wun - chr2R_8_9405001 chr2R_9405001 RAL-776 434 chr2R 9480086 9480110 chr2R 9490617 9490636 roo 4 10530 0.5 1.5 1.0 2.0 10550 chr2R 9480086 intergenic not near genes chr2R 9485361 intergenic not near genes chr2R 9490636 intergenic not near genes chr2R_4_9485001 chr2R_9485001 RAL-776 435 chr2R 9541626 9541651 chr2R 9541703 9541727 5 76 0.0 1.0 0.5 3.3 101 chr2R 9541626 intergenic brp +,CG1888 - chr2R 9541676 intergenic brp +,CG1888 - chr2R 9541727 intergenic brp +,CG1888 - chr2R_5_9540001 chr2R_9540001 RAL-776 436 chr2R 9726617 9726646 chr2R 9734168 9734196 17.6 8 7550 2.5 2.5 2.5 2.3 7579 chr2R 9726617 intron sqa - chr2R 9730406 intron sqa - chr2R 9734196 intron sqa - chr2R_8_9730001 chr2R_9730001 RAL-776 437 chr2R 9871048 9871074 chr2R 9871527 9871541 roo 6 481 1.5 6.5 4.0 1.2 493 chr2R 9871048 intron cbx - chr2R 9871294 intron cbx - chr2R 9871541 intron,5` UTR cbx -,CG18446 + chr2R_6_9870001 chr2R_9870001 RAL-776 438 chr2R 9940747 9940775 chr2R 9940829 9940857 7 79 1.5 3.5 2.5 2.0 110 chr2R 9940747 5` UTR Mef2 - chr2R 9940802 5` UTR Mef2 - chr2R 9940857 5` UTR Mef2 - chr2R_7_9940001 chr2R_9940001 RAL-776 439 chr2R 9945446 9945467 chr2R 9945628 9945663 BS 8 193 6.5 1.5 4.0 1.6 217 chr2R 9945446 intron Mef2 - chr2R 9945554 intron Mef2 - chr2R 9945663 intron Mef2 - chr2R_8_9945001 chr2R_9945001 RAL-776 440 chr2R 10005562 10005569 chr2R 10005669 10005677 4 108 3.0 4.5 3.8 0.8 115 chr2R 10005562 intron Pka-R2 - chr2R 10005620 intron Pka-R2 - chr2R 10005677 intron Pka-R2 - chr2R_4_10005001 chr2R_10005001 RAL-776 441 chr2R 10005847 10005874 chr2R 10007011 10007039 1360 16 1164 7.5 4.5 6.0 2.3 1192 chr2R 10005847 intron Pka-R2 - chr2R 10006443 intron Pka-R2 - chr2R 10007039 intron Pka-R2 - chr2R_16_10005001 chr2R_10005001 RAL-776 442 chr2R 10047823 10047842 chr2R 10047906 10047925 5 83 3.0 6.0 4.5 0.9 102 chr2R 10047823 intron oys - chr2R 10047874 intron oys - chr2R 10047925 intron oys - chr2R_5_10045001 chr2R_10045001 RAL-776 443 chr2R 10132205 10132221 chr2R 10132285 10132301 11 80 1.5 6.0 3.8 2.3 96 chr2R 10132205 intron gem + chr2R 10132253 intron gem + chr2R 10132301 intron gem + chr2R_11_10130001 chr2R_10130001 RAL-776 444 chr2R 10190442 10190466 chr2R 10190525 10190550 6 83 1.5 5.0 3.2 1.4 108 chr2R 10190442 intron KCNQ - chr2R 10190496 intron KCNQ - chr2R 10190550 intron KCNQ - chr2R_6_10190001 chr2R_10190001 RAL-776 445 chr2R 10216194 10216215 chr2R 10216272 10216293 7 78 2.5 1.0 1.8 2.5 99 chr2R 10216194 intron,intron CG12912 -,Hr46 - chr2R 10216244 intron,intron CG12912 -,Hr46 - chr2R 10216293 intron,intron CG12912 -,Hr46 - chr2R_7_10215001 chr2R_10215001 RAL-776 446 chr2R 10225742 10225749 chr2R 10225824 10225831 5 82 1.0 3.5 2.2 1.6 89 chr2R 10225742 intron,intron CG12912 -,Hr46 - chr2R 10225786 intron,intron CG12912 -,Hr46 - chr2R 10225831 intron,intron CG12912 -,Hr46 - chr2R_5_10225001 chr2R_10225001 RAL-776 447 chr2R 10313311 10313352 chr2R 10313399 10313440 10 88 0.0 1.5 0.8 5.6 129 chr2R 10313311 intergenic not near genes chr2R 10313376 intergenic not near genes chr2R 10313440 intergenic Ndg + chr2R_10_10310001 chr2R_10310001 RAL-776 448 chr2R 10352673 10352705 chr2R 10352750 10352782 9 76 2.0 2.0 2.0 3.0 109 chr2R 10352673 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352728 intron,3` UTR,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R 10352782 intron,exon,5` UTR,3` UTR CG42732 -,CG43171 -,CG43178 -,CG43201 - chr2R_9_10350001 chr2R_10350001 RAL-776 449 chr2R 10429021 10429050 chr2R 10429098 10429099 5 70 2.0 4.0 3.0 1.2 78 chr2R 10429021 intergenic not near genes chr2R 10429060 intergenic not near genes chr2R 10429099 intergenic not near genes chr2R_5_10425001 chr2R_10425001 RAL-776 450 chr2R 10454096 10454127 chr2R 10454173 10454204 5 77 2.5 3.5 3.0 1.2 108 chr2R 10454096 intron,intron Galphao +,Cyp49a1 - chr2R 10454150 intron,intron Galphao +,Cyp49a1 - chr2R 10454204 intron,intron Galphao +,Cyp49a1 - chr2R_5_10450001 chr2R_10450001 RAL-776 451 chr2R 10469021 10469056 chr2R 10469147 10469182 21 126 2.0 3.5 2.8 5.5 161 chr2R 10469021 intron CG11777 + chr2R 10469102 intron CG11777 + chr2R 10469182 intron CG11777 + chr2R_21_10465001 chr2R_10465001 RAL-776 452 chr2R 10562986 10562991 chr2R 10563063 10563069 5 77 0.5 1.0 0.8 2.8 83 chr2R 10562986 intron psq + chr2R 10563028 intron psq + chr2R 10563069 intron psq + chr2R_5_10560001 chr2R_10560001 RAL-776 453 chr2R 10563553 10563580 chr2R 10563633 10563660 5 80 2.5 7.0 4.8 0.9 107 chr2R 10563553 intron psq + chr2R 10563606 intron psq + chr2R 10563660 intron psq + chr2R_5_10560001 chr2R_10560001 RAL-776 454 chr2R 10574626 10574635 chr2R 10574705 10574717 4 81 5.0 2.0 3.5 0.9 91 chr2R 10574626 intron psq + chr2R 10574672 intron psq + chr2R 10574717 intron psq + chr2R_4_10570001 chr2R_10570001 RAL-776 455 chr2R 10585580 10585589 chr2R 10594163 10594168 Tirant 4 8582 4.0 4.5 4.2 0.8 8588 chr2R 10585580 intron psq + chr2R 10589874 intron psq + chr2R 10594168 intron psq + chr2R_4_10585001 chr2R_10585001 RAL-776 456 chr2R 10622355 10622377 chr2R 10637120 10637142 mdg1 4 14765 1.5 1.5 1.5 1.6 14787 chr2R 10622355 intron CG11883 + chr2R 10629748 intron CG11883 + chr2R 10637142 intron CG11883 + chr2R_4_10625001 chr2R_10625001 RAL-776 457 chr2R 10644061 10644085 chr2R 10644136 10644163 6 78 1.5 0.5 1.0 3.0 102 chr2R 10644061 intron Git - chr2R 10644112 intron Git - chr2R 10644163 intron Git - chr2R_6_10640001 chr2R_10640001 RAL-776 458 chr2R 10683979 10683993 chr2R 10684110 10684131 5 137 0.0 4.0 2.0 1.7 152 chr2R 10683979 intron stan + chr2R 10684055 intron stan + chr2R 10684131 intron stan + chr2R_5_10680001 chr2R_10680001 RAL-776 459 chr2R 10727507 10727528 chr2R 10727605 10727610 5 95 3.5 3.5 3.5 1.1 103 chr2R 10727507 intron Rab3 - chr2R 10727558 intron Rab3 - chr2R 10727610 intron Rab3 - chr2R_5_10725001 chr2R_10725001 RAL-776 460 chr2R 10742436 10742452 chr2R 10742619 10742636 5 184 3.5 2.5 3.0 1.2 200 chr2R 10742436 intron CG33144 - chr2R 10742536 intron CG33144 - chr2R 10742636 intron CG33144 - chr2R_5_10740001 chr2R_10740001 RAL-776 461 chr2R 10947096 10947102 chr2R 10947182 10947188 4 86 4.0 0.0 2.0 1.3 92 chr2R 10947096 intergenic CR45228 + chr2R 10947142 intergenic CR45228 + chr2R 10947188 intergenic CR45228 + chr2R_4_10945001 chr2R_10945001 RAL-776 462 chr2R 10948027 10948062 chr2R 10955578 10955613 17.6 10 7546 1.0 3.0 2.0 3.3 7586 chr2R 10948027 intergenic not near genes chr2R 10951820 intergenic not near genes chr2R 10955613 intergenic not near genes chr2R_10_10950001 chr2R_10950001 RAL-776 463 chr2R 10975000 10975006 chr2R 10975109 10975115 4 109 6.5 3.0 4.8 0.7 115 chr2R 10975000 intergenic not near genes chr2R 10975058 intergenic not near genes chr2R 10975115 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-776 464 chr2R 10979664 10979684 chr2R 10980136 10980151 297 4 471 0.0 4.5 2.2 1.2 487 chr2R 10979664 intergenic not near genes chr2R 10979908 intergenic not near genes chr2R 10980151 intergenic not near genes chr2R_4_10975001 chr2R_10975001 RAL-776 465 chr2R 11009836 11009846 chr2R 11019000 11019020 roo 6 9172 1.5 5.0 3.2 1.4 9184 chr2R 11009836 intron luna - chr2R 11014428 intron luna - chr2R 11019020 intron luna - chr2R_6_11010001 chr2R_11010001 RAL-776 466 chr2R 11019877 11019905 chr2R 11024943 11024967 jockey 6 5060 2.0 3.0 2.5 1.7 5090 chr2R 11019877 intron luna - chr2R 11022422 intron luna - chr2R 11024967 intron luna - chr2R_6_11020001 chr2R_11020001 RAL-776 467 chr2R 11028763 11028796 chr2R 11028952 11028985 8 189 4.0 2.0 3.0 2.0 222 chr2R 11028763 intron luna - chr2R 11028874 intron luna - chr2R 11028985 intron luna - chr2R_8_11025001 chr2R_11025001 RAL-776 468 chr2R 11044155 11044165 chr2R 11044233 11044234 4 76 6.0 2.5 4.2 0.8 79 chr2R 11044155 intron luna - chr2R 11044194 intron luna - chr2R 11044234 intron luna - chr2R_4_11040001 chr2R_11040001 RAL-776 469 chr2R 11179269 11179291 chr2R 11179355 11179363 4 82 3.0 4.5 3.8 0.8 94 chr2R 11179269 intron shn + chr2R 11179316 intron shn + chr2R 11179363 intron shn + chr2R_4_11175001 chr2R_11175001 RAL-776 470 chr2R 11207819 11207848 chr2R 11208012 11208035 BS 10 192 4.5 5.0 4.8 1.7 216 chr2R 11207819 intron shn + chr2R 11207927 intron shn + chr2R 11208035 intron shn + chr2R_10_11205001 chr2R_11205001 RAL-776 471 chr2R 11253230 11253249 chr2R 11253306 11253324 4 75 6.5 1.5 4.0 0.8 94 chr2R 11253230 intron Cpr47Ea - chr2R 11253277 intron Cpr47Ea - chr2R 11253324 intron Cpr47Ea - chr2R_4_11250001 chr2R_11250001 RAL-776 472 chr2R 11415527 11415545 chr2R 11418666 11418693 opus 6 3143 3.0 4.0 3.5 1.3 3166 chr2R 11415527 intron Drip - chr2R 11417110 intron Drip - chr2R 11418693 intron Drip - chr2R_6_11415001 chr2R_11415001 RAL-776 473 chr2R 11419863 11419891 chr2R 11419992 11420021 13 128 3.5 3.0 3.2 3.1 158 chr2R 11419863 intron Drip - chr2R 11419942 intron Drip - chr2R 11420021 intron Drip - chr2R_13_11415001 chr2R_11415001 RAL-776 474 chr2R 11472648 11472671 chr2R 11473844 11473868 pogo 8 1196 4.0 6.0 5.0 1.3 1220 chr2R 11472648 intergenic not near genes chr2R 11473258 intergenic not near genes chr2R 11473868 intergenic not near genes chr2R_8_11470001 chr2R_11470001 RAL-776 475 chr2R 11516787 11516814 chr2R 11516870 11516897 12 80 1.0 3.0 2.0 4.0 110 chr2R 11516787 intergenic not near genes chr2R 11516842 intergenic not near genes chr2R 11516897 intergenic not near genes chr2R_12_11515001 chr2R_11515001 RAL-776 476 chr2R 11614625 11614797 chr2R 11614713 11614884 7 87 4.0 2.5 3.2 1.7 259 chr2R 11614625 intron tou - chr2R 11614754 intron tou - chr2R 11614884 intron tou - chr2R_7_11610001 chr2R_11610001 RAL-776 477 chr2R 11724174 11724188 chr2R 11724257 11724271 4 83 0.0 2.0 1.0 2.0 97 chr2R 11724174 intron pyr + chr2R 11724222 intron pyr + chr2R 11724271 intron pyr + chr2R_4_11720001 chr2R_11720001 RAL-776 478 chr2R 11787445 11787469 chr2R 11787530 11787552 6 85 7.0 3.5 5.2 1.0 107 chr2R 11787445 intron ths + chr2R 11787498 intron ths + chr2R 11787552 intron ths + chr2R_6_11785001 chr2R_11785001 RAL-776 479 chr2R 8518774 8518785 chr2R 12066183 12066201 4 3547411 4.0 8.5 6.2 0.6 3547427 chr2R 8518774 intron mtt - chr2R 10292488 intron CAP + chr2R 12066201 intron CG8888 - chr2R_4_10290001 chr2R_10290001 RAL-776 480 chr2R 12272322 12272349 chr2R 12272405 12272432 9 82 3.0 2.5 2.8 2.4 110 chr2R 12272322 intron Cam + chr2R 12272377 intron Cam + chr2R 12272432 intron Cam + chr2R_9_12270001 chr2R_12270001 RAL-776 481 chr2R 12363387 12363416 chr2R 12363819 12363848 10 431 2.0 4.5 3.2 2.4 461 chr2R 12363387 intergenic CG30043 + chr2R 12363618 intergenic CG30043 + chr2R 12363848 intergenic not near genes chr2R_10_12360001 chr2R_12360001 RAL-776 482 chr2R 12501703 12501724 chr2R 12503854 12503886 Rt1c 6 2158 2.0 7.5 4.8 1.0 2183 chr2R 12501703 intron fdl - chr2R 12502794 intron fdl - chr2R 12503886 intron fdl - chr2R_6_12500001 chr2R_12500001 RAL-776 483 chr2R 12510747 12510767 chr2R 12510828 12510846 6 80 1.5 4.5 3.0 1.5 99 chr2R 12510747 intergenic vis - chr2R 12510796 intergenic vis - chr2R 12510846 intergenic vis - chr2R_6_12510001 chr2R_12510001 RAL-776 484 chr2R 12602807 12602833 chr2R 12602891 12602915 8 84 1.0 3.0 2.0 2.7 108 chr2R 12602807 intron Amph + chr2R 12602861 intron Amph + chr2R 12602915 intron Amph + chr2R_8_12600001 chr2R_12600001 RAL-776 485 chr2R 12607747 12607753 chr2R 12607868 12607874 5 121 2.0 2.5 2.2 1.6 127 chr2R 12607747 intron Amph + chr2R 12607810 intron Amph + chr2R 12607874 intron Amph + chr2R_5_12605001 chr2R_12605001 RAL-776 486 chr2R 12643787 12643799 chr2R 12643863 12643875 5 75 2.5 2.5 2.5 1.4 88 chr2R 12643787 intron CG8785 - chr2R 12643831 intron CG8785 - chr2R 12643875 intron CG8785 - chr2R_5_12640001 chr2R_12640001 RAL-776 487 chr2R 12677378 12677401 chr2R 12677462 12677485 5 83 0.0 0.5 0.2 4.2 107 chr2R 12677378 intron CG42708 - chr2R 12677432 intron CG42708 - chr2R 12677485 intron CG42708 - chr2R_5_12675001 chr2R_12675001 RAL-776 488 chr2R 12734060 12734082 chr2R 12734140 12734160 4 77 1.5 1.5 1.5 1.6 100 chr2R 12734060 intron CG42663 + chr2R 12734110 intron CG42663 + chr2R 12734160 intron CG42663 + chr2R_4_12730001 chr2R_12730001 RAL-776 489 chr2R 12789293 12789327 chr2R 12797656 12797677 roo 6 8355 1.5 1.0 1.2 2.7 8384 chr2R 12789293 intron,3` UTR sca +,CR45137 - chr2R 12793485 intron,intron sca +,CR45137 - chr2R 12797677 intron,3` UTR sca +,CR45137 - chr2R_6_12790001 chr2R_12790001 RAL-776 490 chr2R 12819457 12819477 chr2R 12824526 12824546 jockey 4 5069 1.0 4.5 2.8 1.1 5089 chr2R 12819457 intergenic not near genes chr2R 12822002 intergenic not near genes chr2R 12824546 intergenic not near genes chr2R_4_12820001 chr2R_12820001 RAL-776 491 chr2R 12840834 12840844 chr2R 12841171 12841181 5 336 8.0 7.0 7.5 0.6 347 chr2R 12840834 3` UTR Cyp9h1 - chr2R 12841008 exon Cyp9h1 - chr2R 12841181 exon Cyp9h1 - chr2R_5_12840001 chr2R_12840001 RAL-776 492 chr2R 12908491 12908500 chr2R 12908570 12908573 4 78 3.5 3.5 3.5 0.9 82 chr2R 12908491 intergenic not near genes chr2R 12908532 intergenic not near genes chr2R 12908573 intergenic not near genes chr2R_4_12905001 chr2R_12905001 RAL-776 493 chr2R 13012142 13012159 chr2R 13012239 13012256 4 97 2.5 1.5 2.0 1.3 114 chr2R 13012142 intergenic not near genes chr2R 13012199 intergenic not near genes chr2R 13012256 intergenic not near genes chr2R_4_13010001 chr2R_13010001 RAL-776 494 chr2R 13136836 13136866 chr2R 13141634 13141657 Doc 9 4795 4.5 2.5 3.5 2.0 4821 chr2R 13136836 exon Cap-G + chr2R 13139246 intron Cap-G + chr2R 13141657 intron Cap-G + chr2R_9_13135001 chr2R_13135001 RAL-776 495 chr2R 13170719 13170751 chr2R 13170808 13170840 5 89 1.0 4.0 2.5 1.4 121 chr2R 13170719 3` UTR,3` UTR Spt-I +,CR45142 - chr2R 13170780 intergenic CR45142 -,Spt-I + chr2R 13170840 intergenic CR45142 -,Spt-I + chr2R_5_13170001 chr2R_13170001 RAL-776 496 chr2R 13266800 13266810 chr2R 13266877 13266885 4 74 3.0 3.5 3.2 1.0 85 chr2R 13266800 intergenic CG42319 + chr2R 13266842 intergenic not near genes chr2R 13266885 intergenic not near genes chr2R_4_13265001 chr2R_13265001 RAL-776 497 chr2R 13302584 13302602 chr2R 13302662 13302680 5 78 1.5 1.0 1.2 2.3 96 chr2R 13302584 intergenic not near genes chr2R 13302632 intergenic not near genes chr2R 13302680 intergenic not near genes chr2R_5_13300001 chr2R_13300001 RAL-776 498 chr2R 13403921 13403936 chr2R 13404006 13404021 6 85 1.5 1.0 1.2 2.7 100 chr2R 13403921 intergenic not near genes chr2R 13403971 intergenic not near genes chr2R 13404021 intergenic not near genes chr2R_6_13400001 chr2R_13400001 RAL-776 499 chr2R 13439109 13439138 chr2R 13439224 13439276 7 121 3.5 0.0 1.8 2.5 167 chr2R 13439109 intergenic CG42321 -,cnn - chr2R 13439192 intergenic cnn -,CG42321 - chr2R 13439276 intergenic cnn -,CG42321 - chr2R_7_13435001 chr2R_13435001 RAL-776 500 chr2R 13446690 13446708 chr2R 13446771 13446789 4 81 1.5 0.0 0.8 2.2 99 chr2R 13446690 intron cnn - chr2R 13446740 intron cnn - chr2R 13446789 intron cnn - chr2R_4_13445001 chr2R_13445001 RAL-776 501 chr2R 13580503 13580515 chr2R 13580853 13580865 jockey 4 350 0.0 3.0 1.5 1.6 362 chr2R 13580503 3` UTR CG6191 - chr2R 13580684 3` UTR,3` UTR CG6191 -,CG45088 - chr2R 13580865 3` UTR,3` UTR CG6191 -,CG45088 - chr2R_4_13580001 chr2R_13580001 RAL-776 502 chr2R 13599044 13599075 chr2R 13599127 13599148 8 78 3.0 4.0 3.5 1.8 104 chr2R 13599044 intergenic S-Lap5 + chr2R 13599096 intergenic S-Lap5 + chr2R 13599148 intergenic S-Lap5 + chr2R_8_13595001 chr2R_13595001 RAL-776 503 chr2R 13768997 13769008 chr2R 13769095 13769107 4 98 2.0 10.0 6.0 0.6 110 chr2R 13768997 intergenic not near genes chr2R 13769052 intergenic not near genes chr2R 13769107 intergenic not near genes chr2R_4_13765001 chr2R_13765001 RAL-776 504 chr2R 13905603 13905623 chr2R 13907583 13907605 Rt1a 5 1981 5.0 1.5 3.2 1.2 2002 chr2R 13905603 intron shot - chr2R 13906604 intron shot - chr2R 13907605 intron shot - chr2R_5_13905001 chr2R_13905001 RAL-776 505 chr2R 13925847 13925872 chr2R 13926023 13926048 13 176 3.0 1.0 2.0 4.3 201 chr2R 13925847 intron shot - chr2R 13925948 intron shot - chr2R 13926048 intron shot - chr2R_13_13925001 chr2R_13925001 RAL-776 506 chr2R 14018167 14018189 chr2R 14018241 14018273 4 82 0.5 0.5 0.5 2.7 106 chr2R 14018167 intron mam + chr2R 14018220 intron mam + chr2R 14018273 intron mam + chr2R_4_14015001 chr2R_14015001 RAL-776 507 chr2R 14266788 14266791 chr2R 14266836 14266863 4 55 0.5 5.0 2.8 1.1 75 chr2R 14266788 intron CG8547 - chr2R 14266826 intron CG8547 - chr2R 14266863 intron CG8547 - chr2R_4_14265001 chr2R_14265001 RAL-776 508 chr2R 14378981 14379006 chr2R 14379445 14379470 7 461 6.0 6.5 6.2 1.0 489 chr2R 14378981 intron Dh44-R1 + chr2R 14379226 intron Dh44-R1 + chr2R 14379470 intron Dh44-R1 + chr2R_7_14375001 chr2R_14375001 RAL-776 509 chr2R 14386433 14386458 chr2R 14386520 14386534 6 85 2.0 4.5 3.2 1.4 101 chr2R 14386433 intergenic not near genes chr2R 14386484 intergenic not near genes chr2R 14386534 intergenic not near genes chr2R_6_14385001 chr2R_14385001 RAL-776 510 chr2R 14394226 14394248 chr2R 14399015 14399037 Doc 6 4789 4.0 1.5 2.8 1.6 4811 chr2R 14394226 intergenic not near genes chr2R 14396632 intergenic not near genes chr2R 14399037 intergenic not near genes chr2R_6_14395001 chr2R_14395001 RAL-776 511 chr2R 14405553 14405584 chr2R 14405890 14405906 10 334 0.5 3.0 1.8 3.6 353 chr2R 14405553 intergenic not near genes chr2R 14405730 intergenic not near genes chr2R 14405906 intergenic not near genes chr2R_10_14405001 chr2R_14405001 RAL-776 512 chr2R 14467308 14467322 chr2R 14476466 14476480 roo 5 9158 4.0 3.0 3.5 1.1 9172 chr2R 14467308 intergenic not near genes chr2R 14471894 intergenic not near genes chr2R 14476480 5` UTR CR44462 + chr2R_5_14470001 chr2R_14470001 RAL-776 513 chr2R 14530751 14530766 chr2R 14530833 14530846 5 82 4.0 2.5 3.2 1.2 95 chr2R 14530751 intron ttv + chr2R 14530798 intron ttv + chr2R 14530846 intron ttv + chr2R_5_14530001 chr2R_14530001 RAL-776 514 chr2R 14538958 14538991 chr2R 14539034 14539067 10 74 3.0 2.5 2.8 2.6 109 chr2R 14538958 intron ttv + chr2R 14539012 intron ttv + chr2R 14539067 intron ttv + chr2R_10_14535001 chr2R_14535001 RAL-776 515 chr2R 14566447 14566472 chr2R 14566531 14566559 8 86 0.5 2.5 1.5 3.2 112 chr2R 14566447 intron ttv + chr2R 14566503 intron ttv + chr2R 14566559 intron ttv + chr2R_8_14565001 chr2R_14565001 RAL-776 516 chr2R 14733398 14733625 chr2R 14733485 14733704 18 80 2.0 3.0 2.5 5.1 306 chr2R 14733398 intergenic not near genes chr2R 14733551 intergenic not near genes chr2R 14733704 intergenic not near genes chr2R_18_14730001 chr2R_14730001 RAL-776 517 chr2R 14911700 14911723 chr2R 14911823 14911843 10 123 4.5 2.0 3.2 2.4 143 chr2R 14911700 intron CG10249 - chr2R 14911772 intron CG10249 - chr2R 14911843 intron CG10249 - chr2R_10_14910001 chr2R_14910001 RAL-776 518 chr2R 14968455 14968470 chr2R 14968524 14968552 4 76 5.5 3.0 4.2 0.8 97 chr2R 14968455 intron ckn + chr2R 14968504 intron ckn + chr2R 14968552 intron ckn + chr2R_4_14965001 chr2R_14965001 RAL-776 519 chr2R 14979765 14979787 chr2R 14979841 14979863 6 76 4.5 1.5 3.0 1.5 98 chr2R 14979765 3` UTR ckn + chr2R 14979814 3` UTR ckn + chr2R 14979863 3` UTR ckn + chr2R_6_14975001 chr2R_14975001 RAL-776 520 chr2R 15004727 15004753 chr2R 15005056 15005082 jockey 6 328 4.5 2.5 3.5 1.3 355 chr2R 15004727 intergenic not near genes chr2R 15004904 intergenic not near genes chr2R 15005082 intergenic not near genes chr2R_6_15000001 chr2R_15000001 RAL-776 521 chr2R 15015464 15015486 chr2R 15022888 15022908 mdg1 14 7424 4.0 4.0 4.0 2.8 7444 chr2R 15015464 intron hbs + chr2R 15019186 intron hbs + chr2R 15022908 intron hbs + chr2R_14_15015001 chr2R_15015001 RAL-776 522 chr2R 15084980 15084998 chr2R 15092029 15092047 297 4 7049 4.0 2.5 3.2 1.0 7067 chr2R 15084980 intergenic not near genes chr2R 15088514 intergenic not near genes chr2R 15092047 5` UTR CR44457 + chr2R_4_15085001 chr2R_15085001 RAL-776 523 chr2R 15094882 15094915 chr2R 15094959 15094992 8 77 1.0 1.0 1.0 4.0 110 chr2R 15094882 intergenic not near genes chr2R 15094937 intergenic not near genes chr2R 15094992 intergenic not near genes chr2R_8_15090001 chr2R_15090001 RAL-776 524 chr2R 15105197 15105207 chr2R 15105283 15105299 9 91 5.0 4.0 4.5 1.6 102 chr2R 15105197 intergenic not near genes chr2R 15105248 intergenic not near genes chr2R 15105299 intergenic not near genes chr2R_9_15105001 chr2R_15105001 RAL-776 525 chr2R 15119324 15119350 chr2R 15127805 15127828 Tirant 8 8480 1.0 7.0 4.0 1.6 8504 chr2R 15119324 intron chn + chr2R 15123576 intron chn + chr2R 15127828 intron chn + chr2R_8_15120001 chr2R_15120001 RAL-776 526 chr2R 15133484 15133491 chr2R 15133557 15133570 5 78 3.0 2.5 2.8 1.3 86 chr2R 15133484 intron chn + chr2R 15133527 intron chn + chr2R 15133570 intron chn + chr2R_5_15130001 chr2R_15130001 RAL-776 527 chr2R 15136773 15136808 chr2R 15136860 15136895 9 80 1.0 1.0 1.0 4.5 122 chr2R 15136773 intron chn + chr2R 15136834 intron chn + chr2R 15136895 intron chn + chr2R_9_15135001 chr2R_15135001 RAL-776 528 chr2R 15137968 15137994 chr2R 15138048 15138066 4 78 2.0 0.0 1.0 2.0 98 chr2R 15137968 intron chn + chr2R 15138017 intron chn + chr2R 15138066 intron chn + chr2R_4_15135001 chr2R_15135001 RAL-776 529 chr2R 15259081 15259093 chr2R 15259165 15259177 4 84 2.0 3.5 2.8 1.1 96 chr2R 15259081 intron ItgalphaPS4 + chr2R 15259129 intron ItgalphaPS4 + chr2R 15259177 intron ItgalphaPS4 + chr2R_4_15255001 chr2R_15255001 RAL-776 530 chr2R 15296160 15296172 chr2R 15296243 15296255 9 82 5.0 2.0 3.5 2.0 95 chr2R 15296160 intron Trpm - chr2R 15296208 intron Trpm - chr2R 15296255 intron Trpm - chr2R_9_15295001 chr2R_15295001 RAL-776 531 chr2R 15336283 15336314 chr2R 15336361 15336392 10 77 4.0 5.0 4.5 1.8 109 chr2R 15336283 intron Hr51 + chr2R 15336338 intron Hr51 + chr2R 15336392 intron Hr51 + chr2R_10_15335001 chr2R_15335001 RAL-776 532 chr2R 15375355 15375362 chr2R 15376171 15376178 4 816 0.5 2.0 1.2 1.8 823 chr2R 15375355 intergenic not near genes chr2R 15375766 intergenic not near genes chr2R 15376178 intergenic dup - chr2R_4_15375001 chr2R_15375001 RAL-776 533 chr2R 15395858 15395884 chr2R 15395963 15395989 8 105 4.5 4.5 4.5 1.5 131 chr2R 15395858 intergenic not near genes chr2R 15395924 intergenic not near genes chr2R 15395989 intergenic not near genes chr2R_8_15395001 chr2R_15395001 RAL-776 534 chr2R 15530040 15530078 chr2R 15530129 15530165 13 89 1.5 5.5 3.5 2.9 125 chr2R 15530040 intron Khc-73 - chr2R 15530102 intron Khc-73 - chr2R 15530165 intron Khc-73 - chr2R_13_15530001 chr2R_15530001 RAL-776 535 chr2R 15638640 15638658 chr2R 15638727 15638747 8 88 0.0 3.0 1.5 3.2 107 chr2R 15638640 intron CG42524 + chr2R 15638694 intron CG42524 + chr2R 15638747 intron CG42524 + chr2R_8_15635001 chr2R_15635001 RAL-776 536 chr2R 15679106 15679118 chr2R 15679190 15679202 5 84 3.0 0.0 1.5 2.0 96 chr2R 15679106 intergenic CG8207 -,Vha14-1 - chr2R 15679154 intergenic CG8207 -,Vha14-1 - chr2R 15679202 intergenic Vha14-1 -,CG8207 - chr2R_5_15675001 chr2R_15675001 RAL-776 537 chr2R 15685372 15685395 chr2R 15685475 15685498 4 103 2.5 2.5 2.5 1.1 126 chr2R 15685372 intron,exon Ranbp11 +,CG30082 - chr2R 15685435 intron,intron Ranbp11 +,CG30082 - chr2R 15685498 intron,intron Ranbp11 +,CG30082 - chr2R_4_15685001 chr2R_15685001 RAL-776 538 chr2R 15747039 15747042 chr2R 15747122 15747125 4 83 10.0 5.5 7.8 0.5 86 chr2R 15747039 intron CG30089 + chr2R 15747082 intron CG30089 + chr2R 15747125 intron CG30089 + chr2R_4_15745001 chr2R_15745001 RAL-776 539 chr2R 15747043 15747074 chr2R 15747121 15747157 12 82 2.5 5.5 4.0 2.4 114 chr2R 15747043 intron CG30089 + chr2R 15747100 intron CG30089 + chr2R 15747157 intron CG30089 + chr2R_12_15745001 chr2R_15745001 RAL-776 540 chr2R 16225205 16225227 chr2R 16225313 16225322 12 106 3.5 0.5 2.0 4.0 117 chr2R 16225205 5` UTR CG15706 - chr2R 16225264 5` UTR CG15706 - chr2R 16225322 5` UTR CG15706 - chr2R_12_16225001 chr2R_16225001 RAL-776 541 chr2R 16245637 16245655 chr2R 16245725 16245743 5 88 2.5 2.0 2.2 1.6 106 chr2R 16245637 intron CngA - chr2R 16245690 intron CngA - chr2R 16245743 intron CngA - chr2R_5_16245001 chr2R_16245001 RAL-776 542 chr2R 16357851 16357880 chr2R 16357928 16357958 5 74 3.0 3.0 3.0 1.2 107 chr2R 16357851 5` UTR CR43416 + chr2R 16357904 5` UTR CR43416 + chr2R 16357958 5` UTR CR43416 + chr2R_5_16355001 chr2R_16355001 RAL-776 543 chr2R 16450596 16450605 chr2R 16452018 16452027 6 1423 15.5 14.5 15.0 0.4 1431 chr2R 16450596 intergenic not near genes chr2R 16451312 intergenic not near genes chr2R 16452027 intergenic not near genes chr2R_6_16450001 chr2R_16450001 RAL-776 544 chr2R 16450592 16450616 chr2R 16452029 16452038 5 1430 21.5 15.5 18.5 0.3 1446 chr2R 16450592 intergenic not near genes chr2R 16451315 intergenic not near genes chr2R 16452038 intergenic not near genes chr2R_5_16450001 chr2R_16450001 RAL-776 545 chr2R 16571878 16571902 chr2R 16571973 16571997 6 95 1.0 3.5 2.2 1.9 119 chr2R 16571878 intergenic CG4927 + chr2R 16571938 intergenic CG4927 + chr2R 16571997 intergenic CG4927 + chr2R_6_16570001 chr2R_16570001 RAL-776 546 chr2R 16732873 16732882 chr2R 16733043 16733052 4 170 2.0 1.5 1.8 1.4 179 chr2R 16732873 5` UTR CG30463 - chr2R 16732962 intergenic CG30463 - chr2R 16733052 intergenic CG30463 - chr2R_4_16730001 chr2R_16730001 RAL-776 547 chr2R 16737143 16737163 chr2R 16737242 16737260 8 99 5.0 5.0 5.0 1.3 117 chr2R 16737143 3` UTR CG43104 - chr2R 16737202 3` UTR CG43104 - chr2R 16737260 exon CG43104 - chr2R_8_16735001 chr2R_16735001 RAL-776 548 chr2R 16787475 16787487 chr2R 16787557 16787569 4 82 1.5 0.0 0.8 2.2 94 chr2R 16787475 intron CG5522 + chr2R 16787522 intron CG5522 + chr2R 16787569 intron CG5522 + chr2R_4_16785001 chr2R_16785001 RAL-776 549 chr2R 17099989 17100013 chr2R 17100075 17100085 9 80 1.0 2.0 1.5 3.6 96 chr2R 17099989 intergenic CG30456 + chr2R 17100037 intergenic CG30456 + chr2R 17100085 intergenic CG30456 + chr2R_9_17100001 chr2R_17100001 RAL-776 550 chr2R 17147245 17147268 chr2R 17152273 17152299 jockey 10 5030 4.0 5.0 4.5 1.8 5054 chr2R 17147245 intergenic not near genes chr2R 17149772 intergenic not near genes chr2R 17152299 intergenic not near genes chr2R_10_17145001 chr2R_17145001 RAL-776 551 chr2R 17161173 17161205 chr2R 17161258 17161290 10 85 0.5 5.0 2.8 2.6 117 chr2R 17161173 intergenic CG30457 - chr2R 17161232 intergenic CG30457 - chr2R 17161290 intergenic CG30457 - chr2R_10_17160001 chr2R_17160001 RAL-776 552 chr2R 17236506 17236541 chr2R 17241710 17241745 copia 10 5203 2.0 2.0 2.0 3.3 5239 chr2R 17236506 intron mbl + chr2R 17239126 intron mbl + chr2R 17241745 intron mbl + chr2R_10_17235001 chr2R_17235001 RAL-776 553 chr2R 17381586 17381612 chr2R 17381674 17381693 8 86 1.0 2.0 1.5 3.2 107 chr2R 17381586 intergenic not near genes chr2R 17381640 intergenic not near genes chr2R 17381693 intergenic not near genes chr2R_8_17380001 chr2R_17380001 RAL-776 554 chr2R 17393806 17393824 chr2R 17393896 17393915 6 95 3.0 5.5 4.2 1.2 109 chr2R 17393806 intergenic not near genes chr2R 17393860 intergenic not near genes chr2R 17393915 intergenic not near genes chr2R_6_17390001 chr2R_17390001 RAL-776 555 chr2R 17395288 17395319 chr2R 17395364 17395373 5 72 1.0 2.0 1.5 2.0 85 chr2R 17395288 intron Sip1 + chr2R 17395330 intron Sip1 + chr2R 17395373 intron Sip1 + chr2R_5_17395001 chr2R_17395001 RAL-776 556 chr2R 17443774 17443796 chr2R 17443850 17443872 4 76 2.5 1.0 1.8 1.4 98 chr2R 17443774 intron EDTP - chr2R 17443823 intron EDTP - chr2R 17443872 intron EDTP - chr2R_4_17440001 chr2R_17440001 RAL-776 557 chr2R 17455590 17455622 chr2R 17455669 17455701 15 79 3.5 3.5 3.5 3.3 111 chr2R 17455590 exon CG10764 + chr2R 17455646 3` UTR CG10764 + chr2R 17455701 3` UTR CG10764 + chr2R_15_17455001 chr2R_17455001 RAL-776 558 chr2R 17470320 17470355 chr2R 17470400 17470433 8 74 0.0 1.0 0.5 5.3 113 chr2R 17470320 intron qkr54B + chr2R 17470376 intron qkr54B + chr2R 17470433 intron qkr54B + chr2R_8_17470001 chr2R_17470001 RAL-776 559 chr2R 17626862 17626876 chr2R 17626939 17626947 4 76 2.5 8.0 5.2 0.6 85 chr2R 17626862 intron CG10936 - chr2R 17626904 intron CG10936 - chr2R 17626947 intron CG10936 - chr2R_4_17625001 chr2R_17625001 RAL-776 560 chr2R 17637830 17637859 chr2R 17637910 17637939 4 80 0.5 1.5 1.0 2.0 109 chr2R 17637830 intron CG10936 - chr2R 17637884 intron CG10936 - chr2R 17637939 intron CG10936 - chr2R_4_17635001 chr2R_17635001 RAL-776 561 chr2R 17657336 17657349 chr2R 17657434 17657447 7 98 3.0 5.5 4.2 1.3 111 chr2R 17657336 intron CCHa1-R - chr2R 17657392 intron CCHa1-R - chr2R 17657447 intron CCHa1-R - chr2R_7_17655001 chr2R_17655001 RAL-776 562 chr2R 17710086 17710119 chr2R 17710164 17710197 10 78 2.0 2.0 2.0 3.3 111 chr2R 17710086 intron CG6424 - chr2R 17710142 intron CG6424 - chr2R 17710197 intron CG6424 - chr2R_10_17710001 chr2R_17710001 RAL-776 563 chr2R 17714270 17714299 chr2R 17714526 17714556 5 257 1.5 1.5 1.5 2.0 286 chr2R 17714270 intron CG6424 - chr2R 17714413 intron CG6424 - chr2R 17714556 intron CG6424 - chr2R_5_17710001 chr2R_17710001 RAL-776 564 chr2R 17784024 17784050 chr2R 17784265 17784291 pogo 8 241 5.5 3.5 4.5 1.5 267 chr2R 17784024 intergenic mir-31a - chr2R 17784158 intergenic mir-31a - chr2R 17784291 intergenic mir-31a - chr2R_8_17780001 chr2R_17780001 RAL-776 565 chr2R 17891687 17891709 chr2R 17891766 17891788 9 79 1.5 1.5 1.5 3.6 101 chr2R 17891687 intron Elk + chr2R 17891738 intron Elk + chr2R 17891788 intron Elk + chr2R_9_17890001 chr2R_17890001 RAL-776 566 chr2R 17918177 17918195 chr2R 17918244 17918271 4 72 2.5 0.5 1.5 1.6 94 chr2R 17918177 intron Elk + chr2R 17918224 intron Elk + chr2R 17918271 intron Elk + chr2R_4_17915001 chr2R_17915001 RAL-776 567 chr2R 17952671 17952693 chr2R 17952903 17952925 6 232 2.5 1.0 1.8 2.1 254 chr2R 17952671 intergenic not near genes chr2R 17952798 intergenic not near genes chr2R 17952925 intergenic not near genes chr2R_6_17950001 chr2R_17950001 RAL-776 568 chr2R 17952694 17952697 chr2R 17952897 17952922 4 223 2.0 1.0 1.5 1.6 228 chr2R 17952694 intergenic not near genes chr2R 17952808 intergenic not near genes chr2R 17952922 intergenic not near genes chr2R_4_17950001 chr2R_17950001 RAL-776 569 chr2R 17960151 17960171 chr2R 17960236 17960256 8 84 3.0 2.0 2.5 2.3 105 chr2R 17960151 intergenic not near genes chr2R 17960204 intergenic not near genes chr2R 17960256 intergenic not near genes chr2R_8_17960001 chr2R_17960001 RAL-776 570 chr2R 17982926 17982944 chr2R 17983008 17983029 4 84 4.5 3.0 3.8 0.8 103 chr2R 17982926 intron dpr13 - chr2R 17982978 intron dpr13 - chr2R 17983029 intron dpr13 - chr2R_4_17980001 chr2R_17980001 RAL-776 571 chr2R 18023164 18023189 chr2R 18023248 18023275 11 83 7.0 5.5 6.2 1.5 111 chr2R 18023164 intergenic not near genes chr2R 18023220 intergenic not near genes chr2R 18023275 intergenic not near genes chr2R_11_18020001 chr2R_18020001 RAL-776 572 chr2R 18032161 18032185 chr2R 18032490 18032514 4 329 1.5 1.0 1.2 1.8 353 chr2R 18032161 intergenic not near genes chr2R 18032338 intergenic not near genes chr2R 18032514 intergenic not near genes chr2R_4_18030001 chr2R_18030001 RAL-776 573 chr2R 18063424 18063456 chr2R 18063517 18063546 11 91 2.0 4.0 3.0 2.8 122 chr2R 18063424 intron CG34386 + chr2R 18063485 intron CG34386 + chr2R 18063546 intron CG34386 + chr2R_11_18060001 chr2R_18060001 RAL-776 574 chr2R 18197899 18197907 chr2R 18197996 18198004 5 97 4.0 1.5 2.8 1.3 105 chr2R 18197899 intergenic not near genes chr2R 18197952 intergenic not near genes chr2R 18198004 intergenic not near genes chr2R_5_18195001 chr2R_18195001 RAL-776 575 chr2R 18202529 18202540 chr2R 18202637 18202648 4 108 0.0 4.5 2.2 1.2 119 chr2R 18202529 intergenic not near genes chr2R 18202588 intergenic not near genes chr2R 18202648 intergenic not near genes chr2R_4_18200001 chr2R_18200001 RAL-776 576 chr2R 18255694 18255722 chr2R 18255908 18255935 7 213 0.0 3.0 1.5 2.8 241 chr2R 18255694 intergenic not near genes chr2R 18255814 intergenic not near genes chr2R 18255935 intergenic not near genes chr2R_7_18255001 chr2R_18255001 RAL-776 577 chr2R 18289448 18289459 chr2R 18289540 18289556 5 99 0.5 1.0 0.8 2.8 108 chr2R 18289448 intron,intron sbb -,CG14502 + chr2R 18289502 intron,intron sbb -,CG14502 + chr2R 18289556 exon,intron sbb -,CG14502 + chr2R_5_18285001 chr2R_18285001 RAL-776 578 chr2R 18358388 18358416 chr2R 18372600 18372628 roo 17 14212 4.0 1.5 2.8 4.5 14240 chr2R 18358388 intergenic not near genes chr2R 18365508 intergenic not near genes chr2R 18372628 intergenic not near genes chr2R_17_18365001 chr2R_18365001 RAL-776 579 chr2R 18408283 18408313 chr2R 18408404 18408431 11 120 7.5 4.5 6.0 1.6 148 chr2R 18408283 exon GstE8 + chr2R 18408357 exon GstE8 + chr2R 18408431 exon GstE8 + chr2R_11_18405001 chr2R_18405001 RAL-776 580 chr2R 18477744 18477760 chr2R 18477827 18477833 6 81 0.5 4.0 2.2 1.9 89 chr2R 18477744 intron CG30116 - chr2R 18477788 intron CG30116 - chr2R 18477833 intron CG30116 - chr2R_6_18475001 chr2R_18475001 RAL-776 581 chr2R 18528198 18528218 chr2R 18528283 18528285 11 82 5.0 3.5 4.2 2.1 87 chr2R 18528198 intron CG10924 + chr2R 18528242 intron CG10924 + chr2R 18528285 intron CG10924 + chr2R_11_18525001 chr2R_18525001 RAL-776 582 chr2R 18575814 18575831 chr2R 18581984 18582018 3S18 5 6172 2.5 6.0 4.2 1.0 6204 chr2R 18575814 intron GEFmeso - chr2R 18578916 intron GEFmeso - chr2R 18582018 intron GEFmeso - chr2R_5_18575001 chr2R_18575001 RAL-776 583 chr2R 18590867 18590899 chr2R 18600019 18600050 roo 7 9150 3.5 4.5 4.0 1.4 9183 chr2R 18590867 intron GEFmeso - chr2R 18595458 intron GEFmeso - chr2R 18600050 intron GEFmeso - chr2R_7_18595001 chr2R_18595001 RAL-776 584 chr2R 18645631 18645652 chr2R 18645715 18645730 7 86 4.0 2.5 3.2 1.7 99 chr2R 18645631 intron SP2637 - chr2R 18645680 intron SP2637 - chr2R 18645730 intron SP2637 - chr2R_7_18645001 chr2R_18645001 RAL-776 585 chr2R 18768932 18768958 chr2R 18769054 18769055 11 118 4.5 5.0 4.8 1.9 123 chr2R 18768932 intron Mctp + chr2R 18768994 intron Mctp + chr2R 18769055 intron Mctp + chr2R_11_18765001 chr2R_18765001 RAL-776 586 chr2R 18827715 18827723 chr2R 18827795 18827803 4 80 0.0 0.5 0.2 3.3 88 chr2R 18827715 intron CG15097 - chr2R 18827759 intron CG15097 - chr2R 18827803 intron CG15097 - chr2R_4_18825001 chr2R_18825001 RAL-776 587 chr2R 18943624 18943642 chr2R 18943739 18943755 7 115 0.5 5.0 2.8 1.8 131 chr2R 18943624 intron sano + chr2R 18943690 intron sano + chr2R 18943755 intron sano + chr2R_7_18940001 chr2R_18940001 RAL-776 588 chr2R 18953168 18953185 chr2R 18953255 18953272 4 87 4.5 2.0 3.2 1.0 104 chr2R 18953168 intron sano + chr2R 18953220 intron sano + chr2R 18953272 intron sano + chr2R_4_18950001 chr2R_18950001 RAL-776 589 chr2R 19065812 19065834 chr2R 19065895 19065903 4 78 4.0 3.0 3.5 0.9 91 chr2R 19065812 intergenic not near genes chr2R 19065858 intergenic not near genes chr2R 19065903 intergenic not near genes chr2R_4_19065001 chr2R_19065001 RAL-776 590 chr2R 19300962 19300995 chr2R 19301045 19301078 15 83 2.5 4.5 3.5 3.3 116 chr2R 19300962 intron Tab2 + chr2R 19301020 intron Tab2 + chr2R 19301078 intron Tab2 + chr2R_15_19300001 chr2R_19300001 RAL-776 591 chr2R 19537148 19537173 chr2R 19537237 19537260 5 89 4.0 4.0 4.0 1.0 112 chr2R 19537148 intron sm - chr2R 19537204 intron sm - chr2R 19537260 intron sm - chr2R_5_19535001 chr2R_19535001 RAL-776 592 chr2R 19542594 19542625 chr2R 19542671 19542702 7 76 2.5 1.5 2.0 2.3 108 chr2R 19542594 intron sm - chr2R 19542648 intron sm - chr2R 19542702 intron sm - chr2R_7_19540001 chr2R_19540001 RAL-776 593 chr2R 19601266 19601299 chr2R 19601356 19601388 6 89 1.0 2.5 1.8 2.1 122 chr2R 19601266 intron sm - chr2R 19601327 intron sm - chr2R 19601388 intron sm - chr2R_6_19600001 chr2R_19600001 RAL-776 594 chr2R 19651113 19651136 chr2R 19651327 19651339 10 212 5.0 1.0 3.0 2.5 226 chr2R 19651113 intergenic not near genes chr2R 19651226 intergenic not near genes chr2R 19651339 intergenic not near genes chr2R_10_19650001 chr2R_19650001 RAL-776 595 chr2R 19715836 19715853 chr2R 19723325 19723341 blood 9 7487 4.0 4.5 4.2 1.7 7505 chr2R 19715836 intergenic not near genes chr2R 19719588 intergenic not near genes chr2R 19723341 intergenic not near genes chr2R_9_19715001 chr2R_19715001 RAL-776 596 chr2R 19723792 19723802 chr2R 19724102 19724111 4 310 9.5 2.5 6.0 0.6 319 chr2R 19723792 intergenic not near genes chr2R 19723952 intergenic not near genes chr2R 19724111 intergenic not near genes chr2R_4_19720001 chr2R_19720001 RAL-776 597 chr2R 19776603 19776627 chr2R 19779926 19779947 jockey 4 3322 1.0 5.0 3.0 1.0 3344 chr2R 19776603 intergenic not near genes chr2R 19778275 intergenic not near genes chr2R 19779947 intergenic not near genes chr2R_4_19775001 chr2R_19775001 RAL-776 598 chr2R 19914844 19914877 chr2R 19922256 19922287 mdg1 14 7412 4.0 3.5 3.8 2.9 7443 chr2R 19914844 intergenic not near genes chr2R 19918566 intergenic not near genes chr2R 19922287 intergenic not near genes chr2R_14_19915001 chr2R_19915001 RAL-776 599 chr2R 19926022 19926029 chr2R 19926105 19926112 7 83 1.5 5.0 3.2 1.7 90 chr2R 19926022 intergenic CR44626 - chr2R 19926067 intergenic CR44626 - chr2R 19926112 intergenic CR44626 - chr2R_7_19925001 chr2R_19925001 RAL-776 600 chr2R 19957429 19957456 chr2R 19962630 19962658 copia 7 5202 5.0 2.0 3.5 1.6 5229 chr2R 19957429 intergenic CG44623 + chr2R 19960044 intergenic not near genes chr2R 19962658 intergenic not near genes chr2R_7_19960001 chr2R_19960001 RAL-776 601 chr2R 20031907 20031930 chr2R 20032003 20032026 6 95 4.0 2.5 3.2 1.4 119 chr2R 20031907 intergenic not near genes chr2R 20031966 intergenic not near genes chr2R 20032026 intergenic not near genes chr2R_6_20030001 chr2R_20030001 RAL-776 602 chr2R 20118875 20118891 chr2R 20118963 20118979 5 88 4.5 3.5 4.0 1.0 104 chr2R 20118875 intergenic not near genes chr2R 20118927 intergenic not near genes chr2R 20118979 intergenic not near genes chr2R_5_20115001 chr2R_20115001 RAL-776 603 chr2R 20326759 20326793 chr2R 20326836 20326853 6 67 4.0 4.0 4.0 1.2 94 chr2R 20326759 5` UTR MED8 - chr2R 20326806 5` UTR MED8 - chr2R 20326853 intergenic MED8 -,CG8929 + chr2R_6_20325001 chr2R_20325001 RAL-776 604 chr2R 20384028 20384050 chr2R 20384136 20384158 5 108 2.5 1.5 2.0 1.7 130 chr2R 20384028 intergenic not near genes chr2R 20384093 intergenic not near genes chr2R 20384158 intergenic not near genes chr2R_5_20380001 chr2R_20380001 RAL-776 605 chr2R 20508131 20508153 chr2R 20508220 20508242 7 89 2.0 1.0 1.5 2.8 111 chr2R 20508131 intergenic CR44646 + chr2R 20508186 intergenic CR44646 + chr2R 20508242 intergenic CR44646 + chr2R_7_20505001 chr2R_20505001 RAL-776 606 chr2R 20510340 20510357 chr2R 20510664 20510680 5 324 3.0 2.5 2.8 1.3 340 chr2R 20510340 intergenic not near genes chr2R 20510510 intergenic not near genes chr2R 20510680 intergenic CR44648 + chr2R_5_20510001 chr2R_20510001 RAL-776 607 chr2R 20523038 20523064 chr2R 20523149 20523171 10 107 4.0 3.5 3.8 2.1 133 chr2R 20523038 intergenic not near genes chr2R 20523104 intergenic not near genes chr2R 20523171 intergenic not near genes chr2R_10_20520001 chr2R_20520001 RAL-776 608 chr2R 20592579 20592602 chr2R 20592660 20592683 5 81 3.0 4.5 3.8 1.0 104 chr2R 20592579 intron bl + chr2R 20592631 intron bl + chr2R 20592683 intron bl + chr2R_5_20590001 chr2R_20590001 RAL-776 609 chr2R 20739442 20739471 chr2R 20744210 20744236 F-element 4 4764 2.5 2.5 2.5 1.1 4794 chr2R 20739442 intron dpr + chr2R 20741839 intron dpr + chr2R 20744236 intron dpr + chr2R_4_20740001 chr2R_20740001 RAL-776 610 chr2R 20760834 20760867 chr2R 20761106 20761128 4 269 1.0 1.0 1.0 2.0 294 chr2R 20760834 intergenic not near genes chr2R 20760981 intergenic not near genes chr2R 20761128 intergenic not near genes chr2R_4_20760001 chr2R_20760001 RAL-776 611 chr2R 20838058 20838069 chr2R 20838139 20838150 4 81 0.0 0.0 0.0 4.0 92 chr2R 20838058 intron CR44667 + chr2R 20838104 intron CR44667 + chr2R 20838150 intron CR44667 + chr2R_4_20835001 chr2R_20835001 RAL-776 612 chr2R 20859763 20859780 chr2R 20859902 20859919 4 138 0.5 5.0 2.8 1.1 156 chr2R 20859763 intergenic not near genes chr2R 20859841 intergenic not near genes chr2R 20859919 intergenic not near genes chr2R_4_20855001 chr2R_20855001 RAL-776 613 chr2R 20888982 20888992 chr2R 20889055 20889083 5 87 8.0 1.5 4.8 0.9 101 chr2R 20888982 intron otp - chr2R 20889032 intron otp - chr2R 20889083 intron otp - chr2R_5_20885001 chr2R_20885001 RAL-776 614 chr2R 20911094 20911110 chr2R 20911317 20911338 6 228 6.0 6.5 6.2 0.8 244 chr2R 20911094 intergenic CG9235 + chr2R 20911216 intergenic CG9235 + chr2R 20911338 intergenic not near genes chr2R_6_20910001 chr2R_20910001 RAL-776 615 chr2R 20962908 20962939 chr2R 20963006 20963037 9 97 1.5 2.0 1.8 3.2 129 chr2R 20962908 intergenic not near genes chr2R 20962972 intergenic not near genes chr2R 20963037 intergenic not near genes chr2R_9_20960001 chr2R_20960001 RAL-776 616 chr2R 21031760 21031768 chr2R 21031849 21031857 4 89 6.5 2.5 4.5 0.7 97 chr2R 21031760 intergenic not near genes chr2R 21031808 intergenic not near genes chr2R 21031857 intergenic not near genes chr2R_4_21030001 chr2R_21030001 RAL-776 617 chr2R 21057490 21057503 chr2R 21057571 21057576 4 79 0.5 0.0 0.2 3.3 86 chr2R 21057490 intergenic shg -,cpa + chr2R 21057533 intergenic cpa +,shg - chr2R 21057576 intergenic cpa +,shg - chr2R_4_21055001 chr2R_21055001 RAL-776 618 chr2R 21136901 21136918 chr2R 21136985 21137001 4 84 1.5 2.5 2.0 1.3 100 chr2R 21136901 intron Magi - chr2R 21136951 intron Magi - chr2R 21137001 intron Magi - chr2R_4_21135001 chr2R_21135001 RAL-776 619 chr2R 21141117 21141150 chr2R 21141213 21141246 8 96 0.0 3.0 1.5 3.2 129 chr2R 21141117 intron Magi - chr2R 21141182 intron Magi - chr2R 21141246 intron Magi - chr2R_8_21140001 chr2R_21140001 RAL-776 620 chr2R 21151116 21151146 chr2R 21153748 21153779 opus 14 2633 5.0 4.5 4.8 2.4 2663 chr2R 21151116 intron CG30389 - chr2R 21152448 intron CG30389 - chr2R 21153779 intron CG30389 - chr2R_14_21150001 chr2R_21150001 RAL-776 621 chr2R 21253689 21253709 chr2R 21253815 21253835 6 126 5.5 2.5 4.0 1.2 146 chr2R 21253689 intergenic not near genes chr2R 21253762 intergenic not near genes chr2R 21253835 intergenic not near genes chr2R_6_21250001 chr2R_21250001 RAL-776 622 chr2R 21322947 21322975 chr2R 21323026 21323034 5 77 1.0 4.5 2.8 1.3 87 chr2R 21322947 5` UTR CG30394 - chr2R 21322990 5` UTR CG30394 - chr2R 21323034 5` UTR CG30394 - chr2R_5_21320001 chr2R_21320001 RAL-776 623 chr2R 21452335 21452362 chr2R 21452429 21452455 7 93 2.5 2.0 2.2 2.2 120 chr2R 21452335 intron Sdc - chr2R 21452395 intron Sdc - chr2R 21452455 intron Sdc - chr2R_7_21450001 chr2R_21450001 RAL-776 624 chr2R 21494987 21494998 chr2R 21495105 21495116 6 118 5.0 2.0 3.5 1.3 129 chr2R 21494987 intron Fkbp14 - chr2R 21495052 intron Fkbp14 - chr2R 21495116 intron Fkbp14 - chr2R_6_21495001 chr2R_21495001 RAL-776 625 chr2R 21585230 21585248 chr2R 21585309 21585327 8 78 1.5 5.5 3.5 1.8 97 chr2R 21585230 3` UTR CG30222 + chr2R 21585278 3` UTR CG30222 + chr2R 21585327 3` UTR CG30222 + chr2R_8_21585001 chr2R_21585001 RAL-776 626 chr2R 21710944 21710973 chr2R 21711026 21711052 10 82 2.5 1.5 2.0 3.3 108 chr2R 21710944 intron,intron HmgD +,CG30403 - chr2R 21710998 intron,intron HmgD +,CG30403 - chr2R 21711052 intron,intron HmgD +,CG30403 - chr2R_10_21710001 chr2R_21710001 RAL-776 627 chr2R 21736286 21736308 chr2R 21736367 21736390 6 82 4.0 3.0 3.5 1.3 104 chr2R 21736286 intergenic not near genes chr2R 21736338 intergenic not near genes chr2R 21736390 intergenic not near genes chr2R_6_21735001 chr2R_21735001 RAL-776 628 chr2R 21738278 21738309 chr2R 21747436 21747469 roo 7 9153 2.0 0.0 1.0 3.5 9191 chr2R 21738278 intergenic not near genes chr2R 21742874 intergenic not near genes chr2R 21747469 intergenic not near genes chr2R_7_21740001 chr2R_21740001 RAL-776 629 chr2R 21753093 21753102 chr2R 21753578 21753587 roo 4 484 4.5 6.0 5.2 0.6 494 chr2R 21753093 intergenic not near genes chr2R 21753340 intergenic not near genes chr2R 21753587 intergenic not near genes chr2R_4_21750001 chr2R_21750001 RAL-776 630 chr2R 21753106 21753110 chr2R 21753573 21753595 roo 4 480 3.0 5.5 4.2 0.8 489 chr2R 21753106 intergenic not near genes chr2R 21753350 intergenic not near genes chr2R 21753595 intergenic not near genes chr2R_4_21750001 chr2R_21750001 RAL-776 631 chr2R 21759560 21759589 chr2R 21759646 21759649 8 79 2.0 1.5 1.8 2.9 89 chr2R 21759560 intergenic not near genes chr2R 21759604 intergenic not near genes chr2R 21759649 intergenic not near genes chr2R_8_21755001 chr2R_21755001 RAL-776 632 chr2R 21802429 21802432 chr2R 21802519 21802521 5 90 5.0 0.0 2.5 1.4 92 chr2R 21802429 intergenic not near genes chr2R 21802475 intergenic not near genes chr2R 21802521 intergenic not near genes chr2R_5_21800001 chr2R_21800001 RAL-776 633 chr2R 21894399 21894426 chr2R 21894536 21894556 9 136 2.5 2.5 2.5 2.6 157 chr2R 21894399 intron Fili + chr2R 21894478 intron Fili + chr2R 21894556 intron Fili + chr2R_9_21890001 chr2R_21890001 RAL-776 634 chr2R 21906273 21906299 chr2R 21906374 21906400 7 100 3.0 2.5 2.8 1.8 127 chr2R 21906273 intron Fili + chr2R 21906336 intron Fili + chr2R 21906400 intron Fili + chr2R_7_21905001 chr2R_21905001 RAL-776 635 chr2R 21919872 21919901 chr2R 21919960 21919988 7 87 2.0 5.0 3.5 1.6 116 chr2R 21919872 intron Fili + chr2R 21919930 intron Fili + chr2R 21919988 intron Fili + chr2R_7_21915001 chr2R_21915001 RAL-776 636 chr2R 22013002 22013007 chr2R 22013095 22013100 4 93 1.5 0.5 1.0 2.0 98 chr2R 22013002 intron CG34370 - chr2R 22013051 intron CG34370 - chr2R 22013100 intron CG34370 - chr2R_4_22010001 chr2R_22010001 RAL-776 637 chr2R 22043416 22043449 chr2R 22043490 22043525 17 72 2.0 2.0 2.0 5.7 109 chr2R 22043416 intergenic PpD5 - chr2R 22043470 intergenic not near genes chr2R 22043525 intergenic not near genes chr2R_17_22040001 chr2R_22040001 RAL-776 638 chr2R 22179220 22179234 chr2R 22179299 22179307 7 79 0.0 5.5 2.8 1.8 87 chr2R 22179220 intron CG11170 - chr2R 22179264 intron CG11170 - chr2R 22179307 intron CG11170 - chr2R_7_22175001 chr2R_22175001 RAL-776 639 chr2R 22189445 22189470 chr2R 22189572 22189594 6 124 4.5 0.5 2.5 1.7 149 chr2R 22189445 3` UTR Vps35 + chr2R 22189520 3` UTR Vps35 + chr2R 22189594 3` UTR Vps35 + chr2R_6_22185001 chr2R_22185001 RAL-776 640 chr2R 22208658 22208692 chr2R 22208809 22208841 5 151 0.5 0.5 0.5 3.3 183 chr2R 22208658 3` UTR CG3264 - chr2R 22208750 3` UTR CG3264 - chr2R 22208841 3` UTR CG3264 - chr2R_5_22205001 chr2R_22205001 RAL-776 641 chr2R 22292084 22292106 chr2R 22292160 22292193 10 82 2.0 6.5 4.2 1.9 109 chr2R 22292084 5` UTR CR43422 + chr2R 22292138 5` UTR CR43422 + chr2R 22292193 5` UTR CR43422 + chr2R_10_22290001 chr2R_22290001 RAL-776 642 chr2R 22349695 22349725 chr2R 22351479 22351509 jockey 9 1781 2.5 4.5 3.5 2.0 1814 chr2R 22349695 intron Liprin-gamma - chr2R 22350602 intron Liprin-gamma - chr2R 22351509 intron Liprin-gamma - chr2R_9_22350001 chr2R_22350001 RAL-776 643 chr2R 22360390 22360397 chr2R 22360823 22360830 jockey 5 433 4.5 6.5 5.5 0.8 440 chr2R 22360390 intron Liprin-gamma - chr2R 22360610 intron Liprin-gamma - chr2R 22360830 intron Liprin-gamma - chr2R_5_22360001 chr2R_22360001 RAL-776 644 chr2R 22370155 22370165 chr2R 22370279 22370298 4 128 25.5 39.0 32.2 0.1 143 chr2R 22370155 intron Liprin-gamma - chr2R 22370226 intron Liprin-gamma - chr2R 22370298 intron Liprin-gamma - chr2R_4_22370001 chr2R_22370001 RAL-776 645 chr2R 22465319 22465347 chr2R 22465512 22465546 BS 5 195 0.0 1.0 0.5 3.3 227 chr2R 22465319 intron CG10384 + chr2R 22465432 intron CG10384 + chr2R 22465546 intron CG10384 + chr2R_5_22465001 chr2R_22465001 RAL-776 646 chr2R 22499851 22499880 chr2R 22499927 22499956 11 76 0.0 3.5 1.8 3.9 105 chr2R 22499851 intron px - chr2R 22499904 intron px - chr2R 22499956 intron px - chr2R_11_22495001 chr2R_22495001 RAL-776 647 chr2R 22503867 22503897 chr2R 22503962 22503992 6 95 0.0 1.0 0.5 4.0 125 chr2R 22503867 intron px - chr2R 22503930 intron px - chr2R 22503992 intron px - chr2R_6_22500001 chr2R_22500001 RAL-776 648 chr2R 22525757 22525782 chr2R 22529316 22529341 jockey 7 3558 2.5 0.5 1.5 2.8 3584 chr2R 22525757 intron px - chr2R 22527549 intron px - chr2R 22529341 intron px - chr2R_7_22525001 chr2R_22525001 RAL-776 649 chr2R 22575678 22575687 chr2R 22575749 22575750 6 72 3.0 1.5 2.2 1.9 72 chr2R 22575678 intron dnr1 - chr2R 22575714 intron dnr1 - chr2R 22575750 intron dnr1 - chr2R_6_22575001 chr2R_22575001 RAL-776 650 chr2R 22679763 22679780 chr2R 22679824 22679841 7 67 4.0 2.5 3.2 1.7 78 chr2R 22679763 intergenic not near genes chr2R 22679802 intergenic not near genes chr2R 22679841 intergenic not near genes chr2R_7_22675001 chr2R_22675001 RAL-776 651 chr2R 22774966 22774997 chr2R 22775385 22775416 jockey 10 419 4.5 3.5 4.0 2.0 450 chr2R 22774966 intron CG42260 - chr2R 22775191 intron CG42260 - chr2R 22775416 intron CG42260 - chr2R_10_22775001 chr2R_22775001 RAL-776 652 chr2R 22843022 22843050 chr2R 22844984 22845012 flea 6 1962 3.0 3.5 3.2 1.4 1990 chr2R 22843022 intergenic CG9826 + chr2R 22844017 intergenic not near genes chr2R 22845012 intergenic not near genes chr2R_6_22840001 chr2R_22840001 RAL-776 653 chr2R 22945056 22945080 chr2R 22945170 22945194 11 112 5.5 0.5 3.0 2.8 138 chr2R 22945056 exon CG42694 + chr2R 22945125 3` UTR CG42694 + chr2R 22945194 intergenic CG42694 + chr2R_11_22945001 chr2R_22945001 RAL-776 654 chr2R 23037269 23037302 chr2R 23037345 23037376 11 74 1.5 0.5 1.0 5.5 107 chr2R 23037269 intron,intron twi +,CG42741 - chr2R 23037322 intron,intron twi +,CG42741 - chr2R 23037376 intron,intron twi +,CG42741 - chr2R_11_23035001 chr2R_23035001 RAL-776 655 chr2R 23038456 23038478 chr2R 23038541 23038563 5 85 0.5 1.0 0.8 2.8 107 chr2R 23038456 intron,intron twi +,CG42741 - chr2R 23038510 intron,intron twi +,CG42741 - chr2R 23038563 intron,intron twi +,CG42741 - chr2R_5_23035001 chr2R_23035001 RAL-776 656 chr2R 23052653 23052688 chr2R 23052729 23052764 6 76 0.5 1.0 0.8 3.3 111 chr2R 23052653 intergenic not near genes chr2R 23052708 intergenic not near genes chr2R 23052764 intergenic not near genes chr2R_6_23050001 chr2R_23050001 RAL-776 657 chr2R 23102763 23102793 chr2R 23102856 23102887 10 93 3.0 3.0 3.0 2.5 124 chr2R 23102763 exon Gr59c - chr2R 23102825 exon Gr59c - chr2R 23102887 exon Gr59c - chr2R_10_23100001 chr2R_23100001 RAL-776 658 chr2R 23186570 23186602 chr2R 23186648 23186680 9 78 3.0 3.5 3.2 2.1 110 chr2R 23186570 intron CG34371 - chr2R 23186625 intron CG34371 - chr2R 23186680 intron CG34371 - chr2R_9_23185001 chr2R_23185001 RAL-776 659 chr2R 23188567 23188586 chr2R 23188643 23188664 7 76 1.0 4.0 2.5 2.0 97 chr2R 23188567 intron CG34371 - chr2R 23188616 intron CG34371 - chr2R 23188664 intron CG34371 - chr2R_7_23185001 chr2R_23185001 RAL-776 660 chr2R 23219006 23219024 chr2R 23219245 23219263 8 238 3.0 0.0 1.5 3.2 257 chr2R 23219006 intergenic not near genes chr2R 23219134 intergenic not near genes chr2R 23219263 intergenic not near genes chr2R_8_23215001 chr2R_23215001 RAL-776 661 chr2R 23236824 23236993 chr2R 23236916 23237085 10 90 0.5 0.0 0.2 8.3 261 chr2R 23236824 intergenic not near genes chr2R 23236954 intergenic not near genes chr2R 23237085 intergenic not near genes chr2R_10_23235001 chr2R_23235001 RAL-776 662 chr2R 23351917 23351942 chr2R 23352003 23352028 9 85 2.0 3.5 2.8 2.4 111 chr2R 23351917 exon CG34210 + chr2R 23351972 3` UTR CG34210 + chr2R 23352028 3` UTR CG34210 + chr2R_9_23350001 chr2R_23350001 RAL-776 663 chr2R 23402618 23402641 chr2R 23407694 23407717 flea 4 5075 2.0 3.5 2.8 1.1 5099 chr2R 23402618 intergenic CG3520 - chr2R 23405168 intergenic not near genes chr2R 23407717 intergenic not near genes chr2R_4_23405001 chr2R_23405001 RAL-776 664 chr2R 23493015 23493039 chr2R 23493091 23493094 8 72 1.0 2.5 1.8 2.9 79 chr2R 23493015 intergenic not near genes chr2R 23493054 intergenic not near genes chr2R 23493094 intergenic not near genes chr2R_8_23490001 chr2R_23490001 RAL-776 665 chr2R 23508930 23508944 chr2R 23509035 23509060 8 115 1.0 1.0 1.0 4.0 130 chr2R 23508930 intergenic not near genes chr2R 23508995 intergenic not near genes chr2R 23509060 intergenic not near genes chr2R_8_23505001 chr2R_23505001 RAL-776 666 chr2R 23522438 23522446 chr2R 23522492 23522525 6 66 3.5 2.0 2.8 1.6 87 chr2R 23522438 intron RabX1 - chr2R 23522482 intron RabX1 - chr2R 23522525 intron RabX1 - chr2R_6_23520001 chr2R_23520001 RAL-776 667 chr2R 23607044 23607190 chr2R 23607125 23607283 9 86 3.5 5.5 4.5 1.6 239 chr2R 23607044 intron CG17664 - chr2R 23607164 intron CG17664 - chr2R 23607283 intron CG17664 - chr2R_9_23605001 chr2R_23605001 RAL-776 668 chr2R 23784476 23784507 chr2R 23784552 23784585 6 78 1.0 2.5 1.8 2.1 109 chr2R 23784476 intron CG9850 - chr2R 23784530 intron CG9850 - chr2R 23784585 intron CG9850 - chr2R_6_23780001 chr2R_23780001 RAL-776 669 chr2R 23914320 23914332 chr2R 23921921 23921956 412 8 7612 1.5 3.5 2.5 2.3 7636 chr2R 23914320 exon kcc + chr2R 23918138 intron kcc + chr2R 23921956 intron kcc + chr2R_8_23915001 chr2R_23915001 RAL-776 670 chr2R 23986516 23986544 chr2R 23986596 23986624 6 80 0.5 1.5 1.0 3.0 108 chr2R 23986516 intron Phm - chr2R 23986570 intron Phm - chr2R 23986624 intron,5` UTR Phm -,CG30178 + chr2R_6_23985001 chr2R_23985001 RAL-776 671 chr2R 24031381 24031413 chr2R 24031465 24031497 14 83 1.5 4.5 3.0 3.5 116 chr2R 24031381 5` UTR CG30172 - chr2R 24031439 intergenic CG30172 -,Chi - chr2R 24031497 intergenic Chi -,CG30172 - chr2R_14_24030001 chr2R_24030001 RAL-776 672 chr2R 24147069 24147097 chr2R 24154646 24154650 412 5 7571 2.0 5.0 3.5 1.1 7581 chr2R 24147069 intron Dat + chr2R 24150860 intron Dat + chr2R 24154650 intron Dat + chr2R_5_24150001 chr2R_24150001 RAL-776 673 chr2R 24177234 24177264 chr2R 24184719 24184749 412 6 7485 1.0 2.5 1.8 2.1 7515 chr2R 24177234 3` UTR Nop60B + chr2R 24180992 intron Nop60B + chr2R 24184749 3` UTR Nop60B + chr2R_6_24180001 chr2R_24180001 RAL-776 674 chr2R 24352782 24352809 chr2R 24352907 24352907 4 117 1.5 2.0 1.8 1.4 125 chr2R 24352782 intron,intron bs +,CR44811 - chr2R 24352844 intron,intron bs +,CR44811 - chr2R 24352907 intron,intron bs +,CR44811 - chr2R_4_24350001 chr2R_24350001 RAL-776 675 chr2R 24353427 24353462 chr2R 24361788 24361824 roo 12 8361 0.5 7.0 3.8 2.5 8397 chr2R 24353427 intron,intron bs +,CR44811 - chr2R 24357626 intron,intron bs +,CR44811 - chr2R 24361824 intron,intron bs +,CR44811 - chr2R_12_24355001 chr2R_24355001 RAL-776 676 chr2R 24509306 24509340 chr2R 24509391 24509425 18 83 2.0 5.5 3.8 3.8 119 chr2R 24509306 intergenic Letm1 - chr2R 24509366 intergenic Letm1 - chr2R 24509425 intergenic Letm1 - chr2R_18_24505001 chr2R_24505001 RAL-776 677 chr2R 24590095 24590143 chr2R 24590203 24590225 5 97 0.0 7.5 3.8 1.0 130 chr2R 24590095 intron pio + chr2R 24590160 intron pio + chr2R 24590225 intron pio + chr2R_5_24590001 chr2R_24590001 RAL-776 678 chr2R 24636905 24636929 chr2R 24636990 24637015 8 85 3.0 0.0 1.5 3.2 110 chr2R 24636905 intron CG13594 - chr2R 24636960 intron CG13594 - chr2R 24637015 intron CG13594 - chr2R_8_24635001 chr2R_24635001 RAL-776 679 chr2R 24647606 24647617 chr2R 24655163 24655174 412 4 7557 0.0 5.5 2.8 1.1 7568 chr2R 24647606 intergenic not near genes chr2R 24651390 intergenic not near genes chr2R 24655174 intergenic not near genes chr2R_4_24650001 chr2R_24650001 RAL-776 680 chr2R 24727884 24727916 chr2R 24735392 24735424 mdg1 6 7508 0.5 4.5 2.5 1.7 7540 chr2R 24727884 intron Mid1 - chr2R 24731654 intron Mid1 - chr2R 24735424 intron Mid1 - chr2R_6_24730001 chr2R_24730001 RAL-776 681 chr2R 24763609 24763629 chr2R 24765584 24765596 G2 5 1973 2.5 4.5 3.5 1.1 1987 chr2R 24763609 exon CG3894 + chr2R 24764602 intron CG3894 + chr2R 24765596 exon CG3894 + chr2R_5_24760001 chr2R_24760001 RAL-776 682 chr2R 24880748 24880782 chr2R 24880829 24880863 10 79 0.5 1.5 1.0 5.0 115 chr2R 24880748 3` UTR CG44247 + chr2R 24880806 3` UTR CG44247 + chr2R 24880863 3` UTR CG44247 + chr2R_10_24880001 chr2R_24880001 RAL-776 683 chr2R 24927857 24927874 chr2R 24927940 24927957 9 83 2.5 5.5 4.0 1.8 100 chr2R 24927857 intron pain - chr2R 24927907 intron pain - chr2R 24927957 intron pain - chr2R_9_24925001 chr2R_24925001 RAL-776 684 chr2R 25022645 25022673 chr2R 25022729 25022757 5 83 0.5 0.0 0.2 4.2 112 chr2R 25022645 intron uzip + chr2R 25022701 intron uzip + chr2R 25022757 intron uzip + chr2R_5_25020001 chr2R_25020001 RAL-776 685 chr2R 25025183 25025209 chr2R 25026902 25026929 7 1720 14.5 31.0 22.8 0.3 1746 chr2R 25025183 intron uzip + chr2R 25026056 intron uzip + chr2R 25026929 intron uzip + chr2R_7_25025001 chr2R_25025001 RAL-776 686 chr2R 25253447 25253477 chr2R 25253522 25253550 10 74 2.0 3.5 2.8 2.6 103 chr2R 25253447 intron,intron CG9380 -,CG30428 + chr2R 25253498 intron,intron CG9380 -,CG30428 + chr2R 25253550 intron,intron CG9380 -,CG30428 + chr2R_10_25250001 chr2R_25250001 RAL-776 687 chr3L 68982 69003 chr3L 69069 69088 6 86 3.5 4.0 3.8 1.2 106 chr3L 68982 3` UTR Lsp1gamma + chr3L 69035 intergenic Lsp1gamma +,CR44510 + chr3L 69088 intergenic CR44510 +,Lsp1gamma + chr3L_6_65001 chr3L_65001 RAL-776 688 chr3L 93802 93822 chr3L 93870 93902 5 78 3.0 4.0 3.5 1.1 100 chr3L 93802 intergenic not near genes chr3L 93852 intergenic not near genes chr3L 93902 intergenic not near genes chr3L_5_90001 chr3L_90001 RAL-776 689 chr3L 106015 106021 chr3L 106144 106150 4 129 2.0 2.5 2.2 1.2 135 chr3L 106015 intergenic not near genes chr3L 106082 intergenic not near genes chr3L 106150 intergenic not near genes chr3L_4_105001 chr3L_105001 RAL-776 690 chr3L 165678 165692 chr3L 165816 165830 6 138 2.0 2.5 2.2 1.9 152 chr3L 165678 intron p130CAS + chr3L 165754 intron p130CAS + chr3L 165830 intron p130CAS + chr3L_6_165001 chr3L_165001 RAL-776 691 chr3L 390956 390981 chr3L 391062 391087 12 104 1.0 4.0 2.5 3.4 131 chr3L 390956 intron trh - chr3L 391022 intron trh - chr3L 391087 intron trh - chr3L_12_390001 chr3L_390001 RAL-776 692 chr3L 402688 402715 chr3L 409741 409767 297 9 7052 7.5 5.0 6.2 1.2 7079 chr3L 402688 intergenic not near genes chr3L 406228 intergenic not near genes chr3L 409767 intergenic not near genes chr3L_9_405001 chr3L_405001 RAL-776 693 chr3L 514951 514963 chr3L 515014 515045 5 78 4.5 0.5 2.5 1.4 94 chr3L 514951 intron klar - chr3L 514998 intron klar - chr3L 515045 intron klar - chr3L_5_510001 chr3L_510001 RAL-776 694 chr3L 524743 524776 chr3L 524826 524857 5 82 0.0 1.5 0.8 2.8 114 chr3L 524743 intron klar - chr3L 524800 intron klar - chr3L 524857 intron klar - chr3L_5_520001 chr3L_520001 RAL-776 695 chr3L 563979 564002 chr3L 564158 564181 16 178 5.0 7.5 6.2 2.2 202 chr3L 563979 intron hipk + chr3L 564080 intron hipk + chr3L 564181 intron hipk + chr3L_16_560001 chr3L_560001 RAL-776 696 chr3L 606897 606920 chr3L 606971 606999 5 77 1.0 0.5 0.8 2.8 102 chr3L 606897 intergenic Reg-2 - chr3L 606948 intergenic Reg-2 - chr3L 606999 intergenic Reg-2 - chr3L_5_605001 chr3L_605001 RAL-776 697 chr3L 642470 642502 chr3L 642561 642593 10 90 2.5 2.0 2.2 3.1 123 chr3L 642470 5` UTR CR43334 + chr3L 642532 5` UTR CR43334 + chr3L 642593 5` UTR CR43334 + chr3L_10_640001 chr3L_640001 RAL-776 698 chr3L 651386 651423 chr3L 651474 651511 12 86 0.5 2.0 1.2 5.5 125 chr3L 651386 intergenic Gale +,CG3402 - chr3L 651448 intergenic CG3402 -,Gale + chr3L 651511 intergenic CG3402 -,Gale + chr3L_12_650001 chr3L_650001 RAL-776 699 chr3L 705896 705931 chr3L 705992 706027 11 96 2.0 1.5 1.8 3.9 131 chr3L 705896 intergenic CG13895 -,CR44514 + chr3L 705962 3` UTR CG13895 - chr3L 706027 3` UTR CG13895 - chr3L_11_705001 chr3L_705001 RAL-776 700 chr3L 808584 808594 chr3L 808676 808686 7 91 3.0 2.0 2.5 2.0 102 chr3L 808584 intergenic not near genes chr3L 808635 intergenic not near genes chr3L 808686 intergenic not near genes chr3L_7_805001 chr3L_805001 RAL-776 701 chr3L 843723 843751 chr3L 843804 843819 7 79 5.0 0.0 2.5 2.0 96 chr3L 843723 intergenic Gr61a +,CG13889 + chr3L 843771 intergenic Gr61a +,CG13889 + chr3L 843819 intergenic CG13889 +,Gr61a + chr3L_7_840001 chr3L_840001 RAL-776 702 chr3L 857999 858031 chr3L 866480 866512 Tirant 6 8478 4.0 0.5 2.2 1.9 8513 chr3L 857999 intergenic not near genes chr3L 862256 intergenic not near genes chr3L 866512 5` UTR CG12502 + chr3L_6_860001 chr3L_860001 RAL-776 703 chr3L 900005 900016 chr3L 900089 900100 8 84 0.0 6.0 3.0 2.0 95 chr3L 900005 intergenic not near genes chr3L 900052 intergenic not near genes chr3L 900100 intergenic not near genes chr3L_8_900001 chr3L_900001 RAL-776 704 chr3L 901421 901433 chr3L 901505 901516 4 81 13.0 2.0 7.5 0.5 95 chr3L 901421 intergenic not near genes chr3L 901468 intergenic not near genes chr3L 901516 intergenic not near genes chr3L_4_900001 chr3L_900001 RAL-776 705 chr3L 925176 925180 chr3L 932602 932606 mdg1 4 7426 5.0 1.0 3.0 1.0 7430 chr3L 925176 intron Glut1 + chr3L 928891 intron Glut1 + chr3L 932606 intron Glut1 + chr3L_4_925001 chr3L_925001 RAL-776 706 chr3L 925181 925203 chr3L 932601 932629 mdg1 6 7424 2.5 1.0 1.8 2.1 7448 chr3L 925181 intron Glut1 + chr3L 928905 intron Glut1 + chr3L 932629 intron Glut1 + chr3L_6_925001 chr3L_925001 RAL-776 707 chr3L 933876 933906 chr3L 934009 934026 6 130 0.0 1.5 0.8 3.3 150 chr3L 933876 intron Glut1 + chr3L 933951 intron Glut1 + chr3L 934026 intron Glut1 + chr3L_6_930001 chr3L_930001 RAL-776 708 chr3L 939770 939797 chr3L 940891 940918 jockey 12 1120 3.0 1.5 2.2 3.8 1148 chr3L 939770 intron Glut1 + chr3L 940344 intron Glut1 + chr3L 940918 intron Glut1 + chr3L_12_940001 chr3L_940001 RAL-776 709 chr3L 1003059 1003071 chr3L 1003136 1003148 4 77 2.5 4.0 3.2 1.0 89 chr3L 1003059 intron trio - chr3L 1003104 intron trio - chr3L 1003148 intron trio - chr3L_4_1000001 chr3L_1000001 RAL-776 710 chr3L 1040550 1040581 chr3L 1040634 1040665 14 84 2.5 3.5 3.0 3.5 115 chr3L 1040550 intron bab1 - chr3L 1040608 intron bab1 - chr3L 1040665 intron bab1 - chr3L_14_1040001 chr3L_1040001 RAL-776 711 chr3L 1109641 1109663 chr3L 1109726 1109751 12 87 4.5 5.0 4.8 2.1 110 chr3L 1109641 intergenic not near genes chr3L 1109696 intergenic not near genes chr3L 1109751 intergenic not near genes chr3L_12_1105001 chr3L_1105001 RAL-776 712 chr3L 1154128 1154159 chr3L 1163278 1163309 roo 7 9150 3.0 1.0 2.0 2.3 9181 chr3L 1154128 intron bab2 - chr3L 1158718 intron bab2 - chr3L 1163309 intron bab2 - chr3L_7_1155001 chr3L_1155001 RAL-776 713 chr3L 1219599 1219625 chr3L 1227331 1227355 412 6 7732 2.5 5.5 4.0 1.2 7756 chr3L 1219599 intron mwh + chr3L 1223477 intron mwh + chr3L 1227355 intron mwh + chr3L_6_1220001 chr3L_1220001 RAL-776 714 chr3L 1274456 1274478 chr3L 1274624 1274646 5 168 4.0 0.0 2.0 1.7 190 chr3L 1274456 3` UTR CG9134 + chr3L 1274551 intergenic CG9134 + chr3L 1274646 intergenic CG9134 + chr3L_5_1270001 chr3L_1270001 RAL-776 715 chr3L 1415775 1415808 chr3L 1415856 1415889 9 80 1.5 2.5 2.0 3.0 114 chr3L 1415775 intron Ptp61F - chr3L 1415832 intron Ptp61F - chr3L 1415889 intron Ptp61F - chr3L_9_1415001 chr3L_1415001 RAL-776 716 chr3L 1505999 1506024 chr3L 1513596 1513614 17.6 10 7596 4.5 2.5 3.5 2.2 7615 chr3L 1505999 intron,intron Psa +,cue - chr3L 1509806 intron,intron Psa +,cue - chr3L 1513614 intron,intron Psa +,cue - chr3L_10_1505001 chr3L_1505001 RAL-776 717 chr3L 1536635 1536664 chr3L 1536765 1536792 10 128 1.5 7.5 4.5 1.8 157 chr3L 1536635 5` UTR CG12091 - chr3L 1536714 5` UTR CG12091 - chr3L 1536792 5` UTR CG12091 - chr3L_10_1535001 chr3L_1535001 RAL-776 718 chr3L 1740861 1740880 chr3L 1741105 1741125 pogo 5 245 2.5 1.5 2.0 1.7 264 chr3L 1740861 intron Gk + chr3L 1740993 intron Gk + chr3L 1741125 intron Gk + chr3L_5_1740001 chr3L_1740001 RAL-776 719 chr3L 1925077 1925098 chr3L 1925164 1925183 4 85 1.5 2.5 2.0 1.3 106 chr3L 1925077 intron Dbx + chr3L 1925130 intron Dbx + chr3L 1925183 intron Dbx + chr3L_4_1925001 chr3L_1925001 RAL-776 720 chr3L 1988104 1988132 chr3L 1988244 1988272 6 140 1.5 5.0 3.2 1.4 168 chr3L 1988104 intergenic not near genes chr3L 1988188 intergenic not near genes chr3L 1988272 intergenic not near genes chr3L_6_1985001 chr3L_1985001 RAL-776 721 chr3L 1993072 1993100 chr3L 1993153 1993183 16 81 1.5 2.0 1.8 5.7 111 chr3L 1993072 intergenic not near genes chr3L 1993128 intergenic not near genes chr3L 1993183 intergenic not near genes chr3L_16_1990001 chr3L_1990001 RAL-776 722 chr3L 2033434 2033457 chr3L 2033519 2033542 4 85 1.5 2.0 1.8 1.4 108 chr3L 2033434 intergenic not near genes chr3L 2033488 intergenic not near genes chr3L 2033542 intergenic not near genes chr3L_4_2030001 chr3L_2030001 RAL-776 723 chr3L 2035108 2035115 chr3L 2035298 2035304 4 189 1.5 0.0 0.8 2.2 196 chr3L 2035108 intergenic not near genes chr3L 2035206 intergenic not near genes chr3L 2035304 intergenic not near genes chr3L_4_2035001 chr3L_2035001 RAL-776 724 chr3L 2168778 2168795 chr3L 2168864 2168886 10 90 5.0 3.0 4.0 2.0 108 chr3L 2168778 exon CG15879 - chr3L 2168832 intron CG15879 - chr3L 2168886 intron CG15879 - chr3L_10_2165001 chr3L_2165001 RAL-776 725 chr3L 2168798 2168808 chr3L 2168861 2168898 4 83 2.0 3.0 2.5 1.1 100 chr3L 2168798 intron CG15879 - chr3L 2168848 intron CG15879 - chr3L 2168898 intron CG15879 - chr3L_4_2165001 chr3L_2165001 RAL-776 726 chr3L 2210313 2210329 chr3L 2210396 2210412 5 82 0.5 1.5 1.0 2.5 99 chr3L 2210313 intergenic not near genes chr3L 2210362 intergenic not near genes chr3L 2210412 intergenic CG15878 - chr3L_5_2210001 chr3L_2210001 RAL-776 727 chr3L 2308005 2308034 chr3L 2308111 2308140 9 106 5.0 2.0 3.5 2.0 135 chr3L 2308005 intergenic not near genes chr3L 2308072 intergenic not near genes chr3L 2308140 intergenic not near genes chr3L_9_2305001 chr3L_2305001 RAL-776 728 chr3L 2321157 2321191 chr3L 2321234 2321268 11 76 3.5 3.0 3.2 2.6 111 chr3L 2321157 intergenic not near genes chr3L 2321212 intergenic not near genes chr3L 2321268 intergenic not near genes chr3L_11_2320001 chr3L_2320001 RAL-776 729 chr3L 2331581 2331613 chr3L 2331658 2331674 10 74 4.0 2.5 3.2 2.4 93 chr3L 2331581 intron MsR1 + chr3L 2331628 intron MsR1 + chr3L 2331674 intron MsR1 + chr3L_10_2330001 chr3L_2330001 RAL-776 730 chr3L 2380343 2380375 chr3L 2380420 2380452 16 76 5.5 4.5 5.0 2.7 109 chr3L 2380343 intergenic not near genes chr3L 2380398 intergenic not near genes chr3L 2380452 intergenic not near genes chr3L_16_2380001 chr3L_2380001 RAL-776 731 chr3L 2447503 2447537 chr3L 2456659 2456693 roo 11 9153 1.0 5.0 3.0 2.8 9190 chr3L 2447503 intron CG45186 + chr3L 2452098 intron CG45186 + chr3L 2456693 intron CG45186 + chr3L_11_2450001 chr3L_2450001 RAL-776 732 chr3L 2497315 2497335 chr3L 2499233 2499253 4 1919 19.5 8.0 13.8 0.3 1938 chr3L 2497315 exon CG45186 + chr3L 2498284 exon CG45186 + chr3L 2499253 intergenic CG45186 +,CG16758 - chr3L_4_2495001 chr3L_2495001 RAL-776 733 chr3L 2506372 2506391 chr3L 2506579 2506598 4 204 5.0 0.5 2.8 1.1 226 chr3L 2506372 3` UTR Spn - chr3L 2506485 3` UTR Spn - chr3L 2506598 3` UTR Spn - chr3L_4_2505001 chr3L_2505001 RAL-776 734 chr3L 2533658 2533681 chr3L 2533739 2533763 5 81 3.5 10.5 7.0 0.6 105 chr3L 2533658 intron Spn - chr3L 2533710 intron Spn - chr3L 2533763 intron Spn - chr3L_5_2530001 chr3L_2530001 RAL-776 735 chr3L 2561538 2561553 chr3L 2561615 2561630 4 77 0.5 1.0 0.8 2.2 92 chr3L 2561538 intron msn - chr3L 2561584 intron msn - chr3L 2561630 intron msn - chr3L_4_2560001 chr3L_2560001 RAL-776 736 chr3L 2626410 2626444 chr3L 2626534 2626568 10 123 1.5 3.5 2.5 2.9 158 chr3L 2626410 intron Pxn - chr3L 2626489 intron Pxn - chr3L 2626568 intron Pxn - chr3L_10_2625001 chr3L_2625001 RAL-776 737 chr3L 2683943 2683970 chr3L 2684019 2684046 10 76 4.5 2.0 3.2 2.4 103 chr3L 2683943 intron Fife - chr3L 2683994 intron Fife - chr3L 2684046 intron Fife - chr3L_10_2680001 chr3L_2680001 RAL-776 738 chr3L 2700912 2700919 chr3L 2701058 2701075 8 152 3.0 2.5 2.8 2.1 163 chr3L 2700912 intron Fife - chr3L 2700994 intron Fife - chr3L 2701075 intron Fife - chr3L_8_2700001 chr3L_2700001 RAL-776 739 chr3L 2731517 2731548 chr3L 2731599 2731630 7 82 0.5 0.5 0.5 4.7 113 chr3L 2731517 intron Mrtf - chr3L 2731574 intron Mrtf - chr3L 2731630 intron Mrtf - chr3L_7_2730001 chr3L_2730001 RAL-776 740 chr3L 2795722 2795743 chr3L 2795845 2795866 6 123 1.0 2.0 1.5 2.4 144 chr3L 2795722 intron CG43444 - chr3L 2795794 intron CG43444 - chr3L 2795866 intron CG43444 - chr3L_6_2795001 chr3L_2795001 RAL-776 741 chr3L 2900508 2900518 chr3L 2900584 2900589 6 74 8.0 3.0 5.5 0.9 81 chr3L 2900508 intron Shab + chr3L 2900548 intron Shab + chr3L 2900589 intron Shab + chr3L_6_2900001 chr3L_2900001 RAL-776 742 chr3L 2900519 2900535 chr3L 2900582 2900612 7 74 5.0 2.5 3.8 1.5 93 chr3L 2900519 intron Shab + chr3L 2900566 intron Shab + chr3L 2900612 intron Shab + chr3L_7_2900001 chr3L_2900001 RAL-776 743 chr3L 2927840 2927871 chr3L 2936117 2936148 Tirant 6 8274 1.5 0.5 1.0 3.0 8308 chr3L 2927840 intron Shab + chr3L 2931994 intron Shab + chr3L 2936148 intron Shab + chr3L_6_2930001 chr3L_2930001 RAL-776 744 chr3L 3084489 3084510 chr3L 3084571 3084592 4 82 0.5 4.0 2.2 1.2 103 chr3L 3084489 intron CG11486 + chr3L 3084540 intron CG11486 + chr3L 3084592 intron CG11486 + chr3L_4_3080001 chr3L_3080001 RAL-776 745 chr3L 3128190 3128211 chr3L 3128276 3128297 4 86 0.5 2.5 1.5 1.6 107 chr3L 3128190 intergenic prominin-like - chr3L 3128244 intergenic not near genes chr3L 3128297 intergenic not near genes chr3L_4_3125001 chr3L_3125001 RAL-776 746 chr3L 3259670 3259684 chr3L 3259748 3259766 6 82 3.0 0.0 1.5 2.4 96 chr3L 3259670 intron ckd + chr3L 3259718 intron ckd + chr3L 3259766 intron ckd + chr3L_6_3255001 chr3L_3255001 RAL-776 747 chr3L 3281458 3281473 chr3L 3281946 3281969 Doc 5 494 2.0 9.0 5.5 0.8 511 chr3L 3281458 intron CG12017 + chr3L 3281714 intron CG12017 + chr3L 3281969 intron CG12017 + chr3L_5_3280001 chr3L_3280001 RAL-776 748 chr3L 3284441 3284466 chr3L 3284523 3284550 9 78 4.5 4.0 4.2 1.7 109 chr3L 3284441 intron CG12017 + chr3L 3284496 intron CG12017 + chr3L 3284550 intron CG12017 + chr3L_9_3280001 chr3L_3280001 RAL-776 749 chr3L 3475079 3475113 chr3L 3475523 3475557 jockey 7 444 3.0 5.0 4.0 1.4 478 chr3L 3475079 intron CG42324 + chr3L 3475318 intron CG42324 + chr3L 3475557 intron CG42324 + chr3L_7_3475001 chr3L_3475001 RAL-776 750 chr3L 3539959 3539989 chr3L 3540048 3540078 5 89 1.0 0.0 0.5 3.3 119 chr3L 3539959 intron Eip63E + chr3L 3540018 intron Eip63E + chr3L 3540078 intron Eip63E + chr3L_5_3540001 chr3L_3540001 RAL-776 751 chr3L 3574491 3574511 chr3L 3574625 3574645 7 134 3.5 3.0 3.2 1.7 154 chr3L 3574491 intron Eip63E + chr3L 3574568 intron Eip63E + chr3L 3574645 intron Eip63E + chr3L_7_3570001 chr3L_3570001 RAL-776 752 chr3L 3601300 3601325 chr3L 3606611 3606636 copia 9 5311 5.5 3.5 4.5 1.6 5336 chr3L 3601300 intron Eip63E + chr3L 3603968 intron Eip63E + chr3L 3606636 intron Eip63E + chr3L_9_3600001 chr3L_3600001 RAL-776 753 chr3L 3720965 3720980 chr3L 3721046 3721062 4 80 7.0 3.5 5.2 0.6 97 chr3L 3720965 intron CG32264 - chr3L 3721014 intron CG32264 - chr3L 3721062 intron CG32264 - chr3L_4_3720001 chr3L_3720001 RAL-776 754 chr3L 3774346 3774359 chr3L 3774422 3774426 4 73 0.5 0.5 0.5 2.7 80 chr3L 3774346 intron CG32264 - chr3L 3774386 intron CG32264 - chr3L 3774426 intron CG32264 - chr3L_4_3770001 chr3L_3770001 RAL-776 755 chr3L 3793028 3793059 chr3L 3793168 3793199 7 139 2.0 0.5 1.2 3.2 171 chr3L 3793028 intron CG32264 - chr3L 3793114 intron CG32264 - chr3L 3793199 intron CG32264 - chr3L_7_3790001 chr3L_3790001 RAL-776 756 chr3L 3796401 3796429 chr3L 3796730 3796758 6 329 1.5 4.5 3.0 1.5 357 chr3L 3796401 intron CG32264 - chr3L 3796580 intron CG32264 - chr3L 3796758 intron CG32264 - chr3L_6_3795001 chr3L_3795001 RAL-776 757 chr3L 3815062 3815075 chr3L 3815143 3815156 5 81 7.0 1.5 4.2 1.0 94 chr3L 3815062 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815109 intron,3` UTR Scsalpha +,CR43932 - chr3L 3815156 intron,intron Scsalpha +,CR43932 - chr3L_5_3815001 chr3L_3815001 RAL-776 758 chr3L 3890963 3890994 chr3L 3891044 3891075 9 81 2.5 0.0 1.2 4.1 112 chr3L 3890963 intergenic not near genes chr3L 3891019 intergenic not near genes chr3L 3891075 intergenic not near genes chr3L_9_3890001 chr3L_3890001 RAL-776 759 chr3L 3935834 3935845 chr3L 3935912 3935923 4 78 0.5 5.0 2.8 1.1 89 chr3L 3935834 5` UTR Eip63F-2 + chr3L 3935878 5` UTR Eip63F-2 + chr3L 3935923 5` UTR Eip63F-2 + chr3L_4_3935001 chr3L_3935001 RAL-776 760 chr3L 4000765 4000769 chr3L 4000852 4000854 5 87 5.5 0.0 2.8 1.3 89 chr3L 4000765 intergenic not near genes chr3L 4000810 intergenic not near genes chr3L 4000854 intergenic not near genes chr3L_5_4000001 chr3L_4000001 RAL-776 761 chr3L 4081749 4081756 chr3L 4081844 4081850 4 94 0.0 3.5 1.8 1.4 101 chr3L 4081749 intron Gad1 - chr3L 4081800 intron Gad1 - chr3L 4081850 intron Gad1 - chr3L_4_4080001 chr3L_4080001 RAL-776 762 chr3L 4081759 4081768 chr3L 4081840 4081861 4 91 0.0 2.0 1.0 2.0 102 chr3L 4081759 intron Gad1 - chr3L 4081810 intron Gad1 - chr3L 4081861 intron Gad1 - chr3L_4_4080001 chr3L_4080001 RAL-776 763 chr3L 4477764 4477797 chr3L 4478294 4478323 14 529 3.5 1.5 2.5 4.0 559 chr3L 4477764 intergenic not near genes chr3L 4478044 intergenic not near genes chr3L 4478323 intergenic not near genes chr3L_14_4475001 chr3L_4475001 RAL-776 764 chr3L 4519420 4519453 chr3L 4519494 4519528 19 76 3.5 4.0 3.8 4.0 108 chr3L 4519420 intron Tie - chr3L 4519474 intron Tie - chr3L 4519528 intron Tie - chr3L_19_4515001 chr3L_4515001 RAL-776 765 chr3L 4580303 4580334 chr3L 4580389 4580397 8 82 1.5 2.5 2.0 2.7 94 chr3L 4580303 intron CG42540 + chr3L 4580350 intron CG42540 + chr3L 4580397 intron CG42540 + chr3L_8_4580001 chr3L_4580001 RAL-776 766 chr3L 4725920 4725951 chr3L 4726008 4726039 5 88 2.5 3.5 3.0 1.2 119 chr3L 4725920 intron RhoGEF64C + chr3L 4725980 intron RhoGEF64C + chr3L 4726039 intron RhoGEF64C + chr3L_5_4725001 chr3L_4725001 RAL-776 767 chr3L 4840407 4840421 chr3L 4840515 4840530 8 109 1.5 1.5 1.5 3.2 123 chr3L 4840407 intergenic CG13707 - chr3L 4840468 intergenic CG13707 - chr3L 4840530 intergenic CG13707 - chr3L_8_4840001 chr3L_4840001 RAL-776 768 chr3L 4907976 4907989 chr3L 4908052 4908065 6 75 1.5 2.5 2.0 2.0 89 chr3L 4907976 intergenic not near genes chr3L 4908020 intergenic not near genes chr3L 4908065 intergenic not near genes chr3L_6_4905001 chr3L_4905001 RAL-776 769 chr3L 4926688 4926704 chr3L 4926774 4926791 4 87 2.5 3.5 3.0 1.0 103 chr3L 4926688 intergenic not near genes chr3L 4926740 intergenic not near genes chr3L 4926791 intergenic not near genes chr3L_4_4925001 chr3L_4925001 RAL-776 770 chr3L 5045469 5045485 chr3L 5050234 5050266 Doc 4 4777 1.5 0.5 1.0 2.0 4797 chr3L 5045469 intron Con - chr3L 5047868 intron Con - chr3L 5050266 intron Con - chr3L_4_5045001 chr3L_5045001 RAL-776 771 chr3L 5104483 5104508 chr3L 5124617 5124642 6 20134 1.5 2.0 1.8 2.1 20159 chr3L 5104483 intergenic not near genes chr3L 5114562 intergenic not near genes chr3L 5124642 intergenic not near genes chr3L_6_5110001 chr3L_5110001 RAL-776 772 chr3L 5281619 5281650 chr3L 5281714 5281745 9 94 2.0 3.5 2.8 2.4 126 chr3L 5281619 intergenic not near genes chr3L 5281682 intergenic not near genes chr3L 5281745 intergenic not near genes chr3L_9_5280001 chr3L_5280001 RAL-776 773 chr3L 5306674 5306684 chr3L 5306762 5306774 4 89 0.5 0.5 0.5 2.7 100 chr3L 5306674 intergenic not near genes chr3L 5306724 intergenic not near genes chr3L 5306774 intergenic not near genes chr3L_4_5305001 chr3L_5305001 RAL-776 774 chr3L 5384316 5384348 chr3L 5384392 5384420 6 77 1.0 2.5 1.8 2.1 104 chr3L 5384316 intergenic not near genes chr3L 5384368 intergenic not near genes chr3L 5384420 intergenic not near genes chr3L_6_5380001 chr3L_5380001 RAL-776 775 chr3L 5388207 5388231 chr3L 5388524 5388534 9 320 6.5 3.0 4.8 1.6 327 chr3L 5388207 intergenic not near genes chr3L 5388370 intergenic not near genes chr3L 5388534 intergenic not near genes chr3L_9_5385001 chr3L_5385001 RAL-776 776 chr3L 5498414 5498432 chr3L 5498491 5498509 6 77 0.5 6.5 3.5 1.3 95 chr3L 5498414 exon blanks - chr3L 5498462 exon blanks - chr3L 5498509 exon blanks - chr3L_6_5495001 chr3L_5495001 RAL-776 777 chr3L 5677191 5677204 chr3L 5677264 5677280 5 75 0.5 1.5 1.0 2.5 89 chr3L 5677191 intron sif + chr3L 5677236 intron sif + chr3L 5677280 intron sif + chr3L_5_5675001 chr3L_5675001 RAL-776 778 chr3L 5727184 5727188 chr3L 5727656 5727661 4 473 2.5 3.5 3.0 1.0 477 chr3L 5727184 intron sif + chr3L 5727422 intron sif + chr3L 5727661 intron sif + chr3L_4_5725001 chr3L_5725001 RAL-776 779 chr3L 5788707 5788735 chr3L 5788787 5788813 7 78 2.0 3.0 2.5 2.0 106 chr3L 5788707 intergenic not near genes chr3L 5788760 intergenic not near genes chr3L 5788813 intergenic not near genes chr3L_7_5785001 chr3L_5785001 RAL-776 780 chr3L 5926322 5926328 chr3L 5926506 5926518 BS 4 186 6.0 3.0 4.5 0.7 196 chr3L 5926322 intron Vap-33B + chr3L 5926420 intron Vap-33B + chr3L 5926518 intron Vap-33B + chr3L_4_5925001 chr3L_5925001 RAL-776 781 chr3L 5926331 5926347 chr3L 5926505 5926506 BS 6 179 4.0 3.0 3.5 1.3 175 chr3L 5926331 intron Vap-33B + chr3L 5926418 intron Vap-33B + chr3L 5926506 intron Vap-33B + chr3L_6_5925001 chr3L_5925001 RAL-776 782 chr3L 5983830 5983866 chr3L 5983951 5983987 4 121 2.0 0.0 1.0 2.0 157 chr3L 5983830 3` UTR CR45439 - chr3L 5983908 intergenic CR45439 -,CR45440 - chr3L 5983987 intergenic CR45439 -,CR45440 - chr3L_4_5980001 chr3L_5980001 RAL-776 783 chr3L 6001682 6001714 chr3L 6004382 6004414 jockey 11 2700 3.0 3.5 3.2 2.6 2732 chr3L 6001682 intron PVRAP + chr3L 6003048 intron PVRAP + chr3L 6004414 intron PVRAP + chr3L_11_6000001 chr3L_6000001 RAL-776 784 chr3L 6028374 6028403 chr3L 6028471 6028473 7 94 2.0 4.5 3.2 1.7 99 chr3L 6028374 intergenic not near genes chr3L 6028424 intergenic not near genes chr3L 6028473 intergenic not near genes chr3L_7_6025001 chr3L_6025001 RAL-776 785 chr3L 6052658 6052662 chr3L 6052733 6052746 4 82 6.0 4.0 5.0 0.7 88 chr3L 6052658 exon Jon65Aii + chr3L 6052702 intron Jon65Aii + chr3L 6052746 exon Jon65Aii + chr3L_4_6050001 chr3L_6050001 RAL-776 786 chr3L 6132492 6132504 chr3L 6132573 6132585 4 81 0.5 1.0 0.8 2.2 93 chr3L 6132492 intergenic Cpr65Au -,Lcp65Ag2 - chr3L 6132538 intergenic Cpr65Au -,Lcp65Ag2 - chr3L 6132585 intergenic Lcp65Ag2 -,Cpr65Au - chr3L_4_6130001 chr3L_6130001 RAL-776 787 chr3L 6220918 6220948 chr3L 6230070 6230100 roo 14 9150 3.5 7.5 5.5 2.2 9182 chr3L 6220918 5` UTR pncr008:3L + chr3L 6225509 intergenic not near genes chr3L 6230100 intergenic not near genes chr3L_14_6225001 chr3L_6225001 RAL-776 788 chr3L 6503418 6503428 chr3L 6503511 6503521 6 93 2.0 0.0 1.0 3.0 103 chr3L 6503418 intron sfl + chr3L 6503470 intron sfl + chr3L 6503521 intron sfl + chr3L_6_6500001 chr3L_6500001 RAL-776 789 chr3L 6781121 6781140 chr3L 6783134 6783153 Doc 4 2013 2.5 3.0 2.8 1.1 2032 chr3L 6781121 intergenic not near genes chr3L 6782137 intergenic not near genes chr3L 6783153 intergenic not near genes chr3L_4_6780001 chr3L_6780001 RAL-776 790 chr3L 6855935 6855950 chr3L 6860720 6860734 Doc 5 4784 5.5 2.0 3.8 1.0 4799 chr3L 6855935 intergenic not near genes chr3L 6858334 intergenic not near genes chr3L 6860734 intergenic not near genes chr3L_5_6855001 chr3L_6855001 RAL-776 791 chr3L 6887521 6887550 chr3L 6895013 6895042 roo 9 7492 2.0 0.5 1.2 4.1 7521 chr3L 6887521 intergenic not near genes chr3L 6891282 intergenic not near genes chr3L 6895042 intergenic not near genes chr3L_9_6890001 chr3L_6890001 RAL-776 792 chr3L 6958974 6958976 chr3L 6963554 6963584 10 4585 22.5 33.5 28.0 0.3 4610 chr3L 6958974 exon Surf1 + chr3L 6961279 exon sgl - chr3L 6963584 intron sgl - chr3L_10_6960001 chr3L_6960001 RAL-776 793 chr3L 7244935 7244955 chr3L 7245025 7245047 11 91 5.0 2.0 3.5 2.4 112 chr3L 7244935 exon mei-P22 + chr3L 7244991 exon mei-P22 + chr3L 7245047 exon mei-P22 + chr3L_11_7240001 chr3L_7240001 RAL-776 794 chr3L 7285448 7285477 chr3L 7285526 7285543 13 75 3.0 3.5 3.2 3.1 95 chr3L 7285448 intron unc-13-4A - chr3L 7285496 intron unc-13-4A - chr3L 7285543 intron unc-13-4A - chr3L_13_7285001 chr3L_7285001 RAL-776 795 chr3L 7355719 7355720 chr3L 7363632 7363654 7 7914 22.5 18.0 20.2 0.3 7935 chr3L 7355719 exon CTCF - chr3L 7359686 exon pst - chr3L 7363654 exon Sec63 + chr3L_7_7355001 chr3L_7355001 RAL-776 796 chr3L 7377332 7377347 chr3L 7380437 7380452 297 4 3104 3.5 7.5 5.5 0.6 3120 chr3L 7377332 intron SMSr - chr3L 7378892 intron SMSr - chr3L 7380452 intron SMSr - chr3L_4_7375001 chr3L_7375001 RAL-776 797 chr3L 7436119 7436148 chr3L 7436197 7436221 7 77 4.5 3.0 3.8 1.5 102 chr3L 7436119 intron CG42458 + chr3L 7436170 intron CG42458 + chr3L 7436221 intron CG42458 + chr3L_7_7435001 chr3L_7435001 RAL-776 798 chr3L 7450687 7450715 chr3L 7450769 7450798 10 82 3.5 2.0 2.8 2.6 111 chr3L 7450687 intron CG42458 + chr3L 7450742 intron CG42458 + chr3L 7450798 intron CG42458 + chr3L_10_7450001 chr3L_7450001 RAL-776 799 chr3L 7475227 7475242 chr3L 7475305 7475320 12 77 4.0 3.0 3.5 2.7 93 chr3L 7475227 intergenic CG43292 + chr3L 7475274 intergenic CG43292 + chr3L 7475320 intergenic CG43292 + chr3L_12_7475001 chr3L_7475001 RAL-776 800 chr3L 7475243 7475252 chr3L 7475299 7475332 5 70 3.0 2.5 2.8 1.3 89 chr3L 7475243 intergenic CG43292 + chr3L 7475288 intergenic CG43292 + chr3L 7475332 intergenic CG43292 + chr3L_5_7475001 chr3L_7475001 RAL-776 801 chr3L 7491586 7491596 chr3L 7491669 7491673 5 82 1.0 5.5 3.2 1.2 87 chr3L 7491586 intergenic Cyp316a1 + chr3L 7491630 intergenic Cyp316a1 + chr3L 7491673 intergenic Cyp316a1 + chr3L_5_7490001 chr3L_7490001 RAL-776 802 chr3L 7498773 7498789 chr3L 7503550 7503566 F-element 5 4777 1.5 0.5 1.0 2.5 4793 chr3L 7498773 5` UTR CG8539 - chr3L 7501170 intergenic not near genes chr3L 7503566 intergenic not near genes chr3L_5_7500001 chr3L_7500001 RAL-776 803 chr3L 7574215 7574233 chr3L 7574295 7574313 8 79 4.0 1.5 2.8 2.1 98 chr3L 7574215 intergenic not near genes chr3L 7574264 intergenic not near genes chr3L 7574313 intergenic not near genes chr3L_8_7570001 chr3L_7570001 RAL-776 804 chr3L 7574235 7574241 chr3L 7574294 7574309 5 73 2.5 1.5 2.0 1.7 74 chr3L 7574235 intergenic not near genes chr3L 7574272 intergenic not near genes chr3L 7574309 intergenic not near genes chr3L_5_7570001 chr3L_7570001 RAL-776 805 chr3L 7792054 7792086 chr3L 7792138 7792170 16 82 3.5 2.5 3.0 4.0 116 chr3L 7792054 intron CG32369 - chr3L 7792112 intron CG32369 - chr3L 7792170 intron CG32369 - chr3L_16_7790001 chr3L_7790001 RAL-776 806 chr3L 7793718 7793738 chr3L 7800770 7800790 297 7 7052 3.0 6.5 4.8 1.2 7072 chr3L 7793718 intron CG32369 - chr3L 7797254 intron CG32369 - chr3L 7800790 intron CG32369 - chr3L_7_7795001 chr3L_7795001 RAL-776 807 chr3L 7886534 7886547 chr3L 7889037 7889065 Stalker4 4 2514 0.0 1.0 0.5 2.7 2531 chr3L 7886534 intron CG32365 + chr3L 7887800 intron CG32365 + chr3L 7889065 intron CG32365 + chr3L_4_7885001 chr3L_7885001 RAL-776 808 chr3L 7985374 7985397 chr3L 7987703 7987726 NOF 7 2329 1.0 4.5 2.8 1.8 2352 chr3L 7985374 intron nmo + chr3L 7986550 intron nmo + chr3L 7987726 intron nmo + chr3L_7_7985001 chr3L_7985001 RAL-776 809 chr3L 7990862 7990883 chr3L 7990952 7990973 7 90 0.0 2.5 1.2 3.2 111 chr3L 7990862 intron nmo + chr3L 7990918 intron nmo + chr3L 7990973 intron nmo + chr3L_7_7990001 chr3L_7990001 RAL-776 810 chr3L 8319439 8319475 chr3L 8319515 8319521 16 72 4.0 3.5 3.8 3.3 82 chr3L 8319439 intergenic CG43059 - chr3L 8319480 intergenic not near genes chr3L 8319521 intergenic not near genes chr3L_16_8315001 chr3L_8315001 RAL-776 811 chr3L 8451389 8451413 chr3L 8451467 8451490 4 78 0.5 2.5 1.5 1.6 101 chr3L 8451389 intron Gug + chr3L 8451440 intron Gug + chr3L 8451490 intron Gug + chr3L_4_8450001 chr3L_8450001 RAL-776 812 chr3L 8498299 8498327 chr3L 8505766 8505794 blood 5 7467 0.5 1.5 1.0 2.5 7495 chr3L 8498299 intron CG43163 - chr3L 8502046 intron CG43163 - chr3L 8505794 intron CG43163 - chr3L_5_8500001 chr3L_8500001 RAL-776 813 chr3L 8579870 8579881 chr3L 8579948 8579961 5 77 2.5 9.5 6.0 0.7 91 chr3L 8579870 intron CG43078 + chr3L 8579916 intron CG43078 + chr3L 8579961 intron CG43078 + chr3L_5_8575001 chr3L_8575001 RAL-776 814 chr3L 8582945 8582975 chr3L 8583026 8583055 4 79 2.5 0.0 1.2 1.8 110 chr3L 8582945 intron CG43078 + chr3L 8583000 intron CG43078 + chr3L 8583055 intron CG43078 + chr3L_4_8580001 chr3L_8580001 RAL-776 815 chr3L 8625647 8625669 chr3L 8625768 8625785 6 116 4.0 3.5 3.8 1.2 138 chr3L 8625647 intron Zasp66 + chr3L 8625716 intron Zasp66 + chr3L 8625785 intron Zasp66 + chr3L_6_8625001 chr3L_8625001 RAL-776 816 chr3L 8682610 8682643 chr3L 8682697 8682730 15 87 2.5 3.5 3.0 3.8 120 chr3L 8682610 intergenic not near genes chr3L 8682670 intergenic not near genes chr3L 8682730 intergenic not near genes chr3L_15_8680001 chr3L_8680001 RAL-776 817 chr3L 8791274 8791292 chr3L 8796694 8796712 I-element 8 5420 7.0 0.0 3.5 1.8 5438 chr3L 8791274 exon Fhos + chr3L 8793993 intron Fhos + chr3L 8796712 intron Fhos + chr3L_8_8790001 chr3L_8790001 RAL-776 818 chr3L 8862198 8862209 chr3L 8862279 8862290 4 81 3.5 3.5 3.5 0.9 92 chr3L 8862198 intron dally + chr3L 8862244 intron dally + chr3L 8862290 intron dally + chr3L_4_8860001 chr3L_8860001 RAL-776 819 chr3L 8862221 8862231 chr3L 8862275 8862311 7 76 2.0 3.0 2.5 2.0 90 chr3L 8862221 intron dally + chr3L 8862266 intron dally + chr3L 8862311 intron dally + chr3L_7_8860001 chr3L_8860001 RAL-776 820 chr3L 8951346 8951367 chr3L 8951425 8951444 5 78 1.0 2.5 1.8 1.8 98 chr3L 8951346 intron,intron CG43783 -,orb2 - chr3L 8951395 intron,intron CG43783 -,orb2 - chr3L 8951444 intron,intron CG43783 -,orb2 - chr3L_5_8950001 chr3L_8950001 RAL-776 821 chr3L 8958244 8958274 chr3L 8958420 8958436 8 171 2.5 1.5 2.0 2.7 192 chr3L 8958244 intergenic not near genes chr3L 8958340 intergenic not near genes chr3L 8958436 intergenic CG13313 + chr3L_8_8955001 chr3L_8955001 RAL-776 822 chr3L 9003946 9003977 chr3L 9004031 9004060 8 84 3.0 3.5 3.2 1.9 114 chr3L 9003946 intergenic not near genes chr3L 9004003 intergenic not near genes chr3L 9004060 intergenic not near genes chr3L_8_9000001 chr3L_9000001 RAL-776 823 chr3L 9028053 9028085 chr3L 9028156 9028186 13 100 3.5 2.5 3.0 3.2 133 chr3L 9028053 intergenic not near genes chr3L 9028120 intergenic not near genes chr3L 9028186 intergenic not near genes chr3L_13_9025001 chr3L_9025001 RAL-776 824 chr3L 9067318 9067347 chr3L 9067396 9067425 9 79 2.5 2.0 2.2 2.8 107 chr3L 9067318 3` UTR CG4911 - chr3L 9067372 3` UTR CG4911 - chr3L 9067425 3` UTR CG4911 - chr3L_9_9065001 chr3L_9065001 RAL-776 825 chr3L 9076933 9076959 chr3L 9084492 9084519 412 15 7559 4.5 3.0 3.8 3.1 7586 chr3L 9076933 exon Tequila + chr3L 9080726 intron Tequila + chr3L 9084519 exon Tequila + chr3L_15_9080001 chr3L_9080001 RAL-776 826 chr3L 9086912 9086933 chr3L 9086995 9087016 10 81 6.5 5.5 6.0 1.4 104 chr3L 9086912 exon Tequila + chr3L 9086964 exon Tequila + chr3L 9087016 exon Tequila + chr3L_10_9085001 chr3L_9085001 RAL-776 827 chr3L 9115249 9115275 chr3L 9115329 9115357 10 82 1.5 5.0 3.2 2.4 108 chr3L 9115249 intron bol - chr3L 9115303 intron bol - chr3L 9115357 intron bol - chr3L_10_9115001 chr3L_9115001 RAL-776 828 chr3L 9129190 9129220 chr3L 9129270 9129290 4 76 1.5 1.0 1.2 1.8 100 chr3L 9129190 intron bol - chr3L 9129240 intron bol - chr3L 9129290 intron bol - chr3L_4_9125001 chr3L_9125001 RAL-776 829 chr3L 9130562 9130578 chr3L 9134321 9134339 412 6 3760 6.5 4.0 5.2 1.0 3777 chr3L 9130562 intergenic bol - chr3L 9132450 intergenic not near genes chr3L 9134339 intergenic Dhpr + chr3L_6_9130001 chr3L_9130001 RAL-776 830 chr3L 9164701 9164719 chr3L 9166166 9166186 hobo 6 1466 1.5 0.0 0.8 3.3 1485 chr3L 9164701 intron Rdl - chr3L 9165444 intron Rdl - chr3L 9166186 intron Rdl - chr3L_6_9165001 chr3L_9165001 RAL-776 831 chr3L 9219245 9219260 chr3L 9219915 9219932 jockey 5 668 7.5 7.0 7.2 0.6 687 chr3L 9219245 intergenic not near genes chr3L 9219588 intergenic not near genes chr3L 9219932 intergenic not near genes chr3L_5_9215001 chr3L_9215001 RAL-776 832 chr3L 9270636 9270650 chr3L 9278387 9278397 roo 5 7750 2.0 2.0 2.0 1.7 7761 chr3L 9270636 intron GluRIB + chr3L 9274516 intron GluRIB + chr3L 9278397 exon GluRIB + chr3L_5_9270001 chr3L_9270001 RAL-776 833 chr3L 9290045 9290056 chr3L 9290121 9290131 5 75 0.0 0.0 0.0 5.0 86 chr3L 9290045 intergenic not near genes chr3L 9290088 intergenic not near genes chr3L 9290131 intergenic not near genes chr3L_5_9290001 chr3L_9290001 RAL-776 834 chr3L 9318823 9318848 chr3L 9318919 9318944 5 96 5.0 2.5 3.8 1.0 121 chr3L 9318823 intergenic not near genes chr3L 9318884 intergenic not near genes chr3L 9318944 intergenic not near genes chr3L_5_9315001 chr3L_9315001 RAL-776 835 chr3L 9356743 9356770 chr3L 9356819 9356846 5 75 1.5 0.0 0.8 2.8 103 chr3L 9356743 intron UGP - chr3L 9356794 intron UGP - chr3L 9356846 intron UGP - chr3L_5_9355001 chr3L_9355001 RAL-776 836 chr3L 9501703 9501733 chr3L 9502185 9502219 roo 7 485 3.5 2.5 3.0 1.8 516 chr3L 9501703 intron path - chr3L 9501961 intron path - chr3L 9502219 intron path - chr3L_7_9500001 chr3L_9500001 RAL-776 837 chr3L 9510949 9510957 chr3L 9511018 9511036 8 76 0.0 1.5 0.8 4.4 87 chr3L 9510949 intron RpS9 - chr3L 9510992 intron RpS9 - chr3L 9511036 intron RpS9 - chr3L_8_9510001 chr3L_9510001 RAL-776 838 chr3L 9533759 9533785 chr3L 9541319 9541345 412 5 7556 1.5 9.0 5.2 0.8 7586 chr3L 9533759 intergenic not near genes chr3L 9537552 intergenic not near genes chr3L 9541345 intergenic not near genes chr3L_5_9535001 chr3L_9535001 RAL-776 839 chr3L 9575906 9575934 chr3L 9580984 9581012 jockey 8 5078 10.0 6.0 8.0 0.9 5106 chr3L 9575906 intron CG42673 + chr3L 9578459 intron CG42673 + chr3L 9581012 intron CG42673 + chr3L_8_9575001 chr3L_9575001 RAL-776 840 chr3L 9637852 9637884 chr3L 9637934 9637966 12 81 3.5 2.5 3.0 3.0 114 chr3L 9637852 intron fry - chr3L 9637909 intron fry - chr3L 9637966 intron fry - chr3L_12_9635001 chr3L_9635001 RAL-776 841 chr3L 9689511 9689542 chr3L 9689591 9689622 9 80 1.0 4.0 2.5 2.6 111 chr3L 9689511 intron CG6767 - chr3L 9689566 intron CG6767 - chr3L 9689622 intron CG6767 - chr3L_9_9685001 chr3L_9685001 RAL-776 842 chr3L 9697770 9697797 chr3L 9697862 9697888 5 92 1.0 2.0 1.5 2.0 118 chr3L 9697770 intergenic not near genes chr3L 9697829 intergenic not near genes chr3L 9697888 intergenic UbcD4 + chr3L_5_9695001 chr3L_9695001 RAL-776 843 chr3L 9715622 9715625 chr3L 9715698 9715702 4 77 1.0 3.5 2.2 1.2 80 chr3L 9715622 intron vsg + chr3L 9715662 intron vsg + chr3L 9715702 intron vsg + chr3L_4_9715001 chr3L_9715001 RAL-776 844 chr3L 9775384 9775396 chr3L 9775744 9775756 5 360 0.0 5.5 2.8 1.3 372 chr3L 9775384 intron CG8177 + chr3L 9775570 intron CG8177 + chr3L 9775756 intron CG8177 + chr3L_5_9775001 chr3L_9775001 RAL-776 845 chr3L 9850571 9850588 chr3L 9850642 9850666 5 75 2.5 3.5 3.0 1.2 95 chr3L 9850571 intron RasGAP1 - chr3L 9850618 intron RasGAP1 - chr3L 9850666 intron RasGAP1 - chr3L_5_9850001 chr3L_9850001 RAL-776 846 chr3L 9929675 9929697 chr3L 9938452 9938467 roo 4 8772 3.5 8.5 6.0 0.6 8792 chr3L 9929675 intron CG34356 + chr3L 9934071 intron CG34356 + chr3L 9938467 intron CG34356 + chr3L_4_9930001 chr3L_9930001 RAL-776 847 chr3L 10003158 10003181 chr3L 10003255 10003278 8 97 1.0 2.5 1.8 2.9 120 chr3L 10003158 intron dpr6 + chr3L 10003218 intron dpr6 + chr3L 10003278 intron dpr6 + chr3L_8_10000001 chr3L_10000001 RAL-776 848 chr3L 10132068 10132087 chr3L 10132427 10132458 4 364 3.0 3.5 3.2 1.0 390 chr3L 10132068 intron dpr6 + chr3L 10132263 intron dpr6 + chr3L 10132458 intron dpr6 + chr3L_4_10130001 chr3L_10130001 RAL-776 849 chr3L 10214731 10214831 chr3L 10214818 10214933 10 91 0.0 0.0 0.0 10.0 202 chr3L 10214731 intergenic not near genes chr3L 10214832 intergenic not near genes chr3L 10214933 intergenic not near genes chr3L_10_10210001 chr3L_10210001 RAL-776 850 chr3L 10222747 10222775 chr3L 10222826 10222855 6 80 0.0 1.5 0.8 3.3 108 chr3L 10222747 intron scramb1 - chr3L 10222801 intron scramb1 - chr3L 10222855 intron scramb1 - chr3L_6_10220001 chr3L_10220001 RAL-776 851 chr3L 10250332 10250355 chr3L 10250423 10250435 8 89 1.0 2.0 1.5 3.2 103 chr3L 10250332 intergenic not near genes chr3L 10250384 intergenic not near genes chr3L 10250435 intergenic not near genes chr3L_8_10250001 chr3L_10250001 RAL-776 852 chr3L 10298667 10298691 chr3L 10298754 10298778 11 86 0.0 2.5 1.2 5.0 111 chr3L 10298667 intergenic not near genes chr3L 10298722 intergenic not near genes chr3L 10298778 intergenic not near genes chr3L_11_10295001 chr3L_10295001 RAL-776 853 chr3L 10300052 10300068 chr3L 10300144 10300160 5 89 4.0 1.5 2.8 1.3 108 chr3L 10300052 intergenic not near genes chr3L 10300106 intergenic not near genes chr3L 10300160 intergenic not near genes chr3L_5_10300001 chr3L_10300001 RAL-776 854 chr3L 10308742 10308768 chr3L 10308819 10308845 13 76 1.0 1.5 1.2 5.9 103 chr3L 10308742 intergenic not near genes chr3L 10308794 intergenic not near genes chr3L 10308845 intergenic not near genes chr3L_13_10305001 chr3L_10305001 RAL-776 855 chr3L 10393178 10393187 chr3L 10393258 10393267 4 80 0.0 4.5 2.2 1.2 89 chr3L 10393178 intergenic not near genes chr3L 10393222 intergenic not near genes chr3L 10393267 intergenic not near genes chr3L_4_10390001 chr3L_10390001 RAL-776 856 chr3L 10414943 10414976 chr3L 10417314 10417348 Doc 7 2369 0.0 1.5 0.8 3.9 2405 chr3L 10414943 intergenic CG12362 + chr3L 10416146 intergenic not near genes chr3L 10417348 intergenic not near genes chr3L_7_10415001 chr3L_10415001 RAL-776 857 chr3L 10417585 10417606 chr3L 10417662 10417683 11 76 2.0 9.0 5.5 1.7 98 chr3L 10417585 intergenic not near genes chr3L 10417634 intergenic not near genes chr3L 10417683 intergenic not near genes chr3L_11_10415001 chr3L_10415001 RAL-776 858 chr3L 10456007 10456035 chr3L 10456200 10456228 7 193 1.5 2.0 1.8 2.5 221 chr3L 10456007 intergenic not near genes chr3L 10456118 intergenic not near genes chr3L 10456228 intergenic not near genes chr3L_7_10455001 chr3L_10455001 RAL-776 859 chr3L 10469929 10469944 chr3L 10470005 10470020 4 76 4.0 1.0 2.5 1.1 91 chr3L 10469929 intergenic not near genes chr3L 10469974 intergenic not near genes chr3L 10470020 intergenic not near genes chr3L_4_10465001 chr3L_10465001 RAL-776 860 chr3L 10514312 10514344 chr3L 10514392 10514424 8 78 0.0 1.5 0.8 4.4 112 chr3L 10514312 intron A2bp1 + chr3L 10514368 intron A2bp1 + chr3L 10514424 intron A2bp1 + chr3L_8_10510001 chr3L_10510001 RAL-776 861 chr3L 10600460 10600467 chr3L 10600542 10600549 6 82 2.0 2.0 2.0 2.0 89 chr3L 10600460 intergenic not near genes chr3L 10600504 intergenic not near genes chr3L 10600549 intergenic not near genes chr3L_6_10600001 chr3L_10600001 RAL-776 862 chr3L 10658078 10658212 chr3L 10658155 10658334 7 105 0.5 0.5 0.5 4.7 256 chr3L 10658078 intron CG32066 - chr3L 10658206 intron CG32066 - chr3L 10658334 intron CG32066 - chr3L_7_10655001 chr3L_10655001 RAL-776 863 chr3L 10694920 10694933 chr3L 10695012 10695022 5 91 2.0 5.5 3.8 1.0 102 chr3L 10694920 intron NijA - chr3L 10694971 intron NijA - chr3L 10695022 intron NijA - chr3L_5_10690001 chr3L_10690001 RAL-776 864 chr3L 10705574 10705606 chr3L 10705652 10705683 16 76 3.5 2.5 3.0 4.0 109 chr3L 10705574 intergenic not near genes chr3L 10705628 intergenic not near genes chr3L 10705683 intergenic not near genes chr3L_16_10705001 chr3L_10705001 RAL-776 865 chr3L 10721999 10722022 chr3L 10722081 10722104 10 82 1.5 0.0 0.8 5.6 105 chr3L 10721999 intergenic not near genes chr3L 10722052 intergenic not near genes chr3L 10722104 intergenic not near genes chr3L_10_10720001 chr3L_10720001 RAL-776 866 chr3L 10904301 10904329 chr3L 10904390 10904419 8 92 2.0 3.0 2.5 2.3 118 chr3L 10904301 intergenic not near genes chr3L 10904360 intergenic not near genes chr3L 10904419 intergenic not near genes chr3L_8_10900001 chr3L_10900001 RAL-776 867 chr3L 10997590 10997621 chr3L 10997689 10997710 5 89 0.0 4.5 2.2 1.6 120 chr3L 10997590 intron klu - chr3L 10997650 intron klu - chr3L 10997710 intron klu - chr3L_5_10995001 chr3L_10995001 RAL-776 868 chr3L 11087058 11087088 chr3L 11088846 11088877 S-element 8 1788 4.0 1.5 2.8 2.1 1819 chr3L 11087058 intron JIL-1 - chr3L 11087968 intron JIL-1 - chr3L 11088877 intron JIL-1 - chr3L_8_11085001 chr3L_11085001 RAL-776 869 chr3L 11105297 11105327 chr3L 11107008 11107038 X-element 5 1711 2.5 2.5 2.5 1.4 1741 chr3L 11105297 intergenic not near genes chr3L 11106168 intergenic not near genes chr3L 11107038 exon CG32073 - chr3L_5_11105001 chr3L_11105001 RAL-776 870 chr3L 11135528 11135806 chr3L 11135758 11135891 23 103 0.0 0.5 0.2 19.2 363 chr3L 11135528 intergenic CG14143 + chr3L 11135710 intergenic CG14143 +,CG32082 + chr3L 11135891 intergenic CG32082 +,CG14143 + chr3L_23_11135001 chr3L_11135001 RAL-776 871 chr3L 11262454 11262466 chr3L 11262596 11262609 11 143 3.0 0.5 1.8 3.9 155 chr3L 11262454 intergenic not near genes chr3L 11262532 intergenic not near genes chr3L 11262609 intergenic not near genes chr3L_11_11260001 chr3L_11260001 RAL-776 872 chr3L 11277464 11277472 chr3L 11278455 11278467 Rt1a 4 994 1.0 2.5 1.8 1.4 1003 chr3L 11277464 intergenic not near genes chr3L 11277966 intergenic not near genes chr3L 11278467 intergenic not near genes chr3L_4_11275001 chr3L_11275001 RAL-776 873 chr3L 11579557 11579584 chr3L 11579661 11579690 7 106 2.0 2.5 2.2 2.2 133 chr3L 11579557 intergenic CG43390 - chr3L 11579624 intergenic CG43390 - chr3L 11579690 intergenic CG43390 - chr3L_7_11575001 chr3L_11575001 RAL-776 874 chr3L 11590760 11590767 chr3L 11590842 11590849 4 82 2.5 2.5 2.5 1.1 89 chr3L 11590760 intergenic CG33268 - chr3L 11590804 intergenic CG33268 - chr3L 11590849 intergenic CG33268 - chr3L_4_11590001 chr3L_11590001 RAL-776 875 chr3L 11678100 11678125 chr3L 11678187 11678212 8 87 1.0 3.5 2.2 2.5 112 chr3L 11678100 intron CG32085 - chr3L 11678156 intron CG32085 - chr3L 11678212 intron CG32085 - chr3L_8_11675001 chr3L_11675001 RAL-776 876 chr3L 11740137 11740155 chr3L 11740235 11740253 5 95 8.5 4.0 6.2 0.7 116 chr3L 11740137 intron CG6024 - chr3L 11740195 intron CG6024 - chr3L 11740253 intron CG6024 - chr3L_5_11740001 chr3L_11740001 RAL-776 877 chr3L 11744017 11744036 chr3L 11744125 11744144 9 107 2.5 0.0 1.2 4.1 127 chr3L 11744017 exon CG6024 - chr3L 11744080 intron CG6024 - chr3L 11744144 intron CG6024 - chr3L_9_11740001 chr3L_11740001 RAL-776 878 chr3L 11757920 11757934 chr3L 11758016 11758030 4 96 2.5 0.0 1.2 1.8 110 chr3L 11757920 intron CG6024 - chr3L 11757975 intron CG6024 - chr3L 11758030 intron CG6024 - chr3L_4_11755001 chr3L_11755001 RAL-776 879 chr3L 7749470 7749471 chr3L 11777678 11777678 4 4028208 6.0 4.0 5.0 0.7 4028208 chr3L 7749470 intron,3` UTR CG32373 +,CG13685 + chr3L 9763574 5` UTR CG8177 + chr3L 11777678 intron,intron Pi3K68D -,CG14131 + chr3L_4_9760001 chr3L_9760001 RAL-776 880 chr3L 11788604 11788632 chr3L 11788680 11788708 9 74 3.0 2.0 2.5 2.6 104 chr3L 11788604 intron Pi3K68D - chr3L 11788656 intron Pi3K68D - chr3L 11788708 intron Pi3K68D - chr3L_9_11785001 chr3L_11785001 RAL-776 881 chr3L 11849331 11849356 chr3L 11849431 11849455 7 100 4.5 2.5 3.5 1.6 124 chr3L 11849331 intergenic not near genes chr3L 11849393 intergenic not near genes chr3L 11849455 intergenic not near genes chr3L_7_11845001 chr3L_11845001 RAL-776 882 chr3L 11850140 11850170 chr3L 11850234 11850263 5 94 1.5 0.0 0.8 2.8 123 chr3L 11850140 intergenic not near genes chr3L 11850202 intergenic CG44837 - chr3L 11850263 intergenic CG44837 - chr3L_5_11850001 chr3L_11850001 RAL-776 883 chr3L 11868168 11868196 chr3L 11868242 11868272 11 75 3.0 0.0 1.5 4.4 104 chr3L 11868168 intron CG44837 - chr3L 11868220 intron CG44837 - chr3L 11868272 intron CG44837 - chr3L_11_11865001 chr3L_11865001 RAL-776 884 chr3L 11887263 11887287 chr3L 11887360 11887388 6 96 0.0 1.5 0.8 3.3 125 chr3L 11887263 intron,3` UTR CG44837 -,CG5897 - chr3L 11887326 intron,3` UTR CG44837 -,CG5897 - chr3L 11887388 intron,3` UTR CG44837 -,CG5897 - chr3L_6_11885001 chr3L_11885001 RAL-776 885 chr3L 11961224 11961233 chr3L 11961295 11961295 4 68 1.0 3.5 2.2 1.2 71 chr3L 11961224 exon prc - chr3L 11961260 exon prc - chr3L 11961295 exon prc - chr3L_4_11960001 chr3L_11960001 RAL-776 886 chr3L 12019324 12019351 chr3L 12019437 12019464 6 113 0.0 2.5 1.2 2.7 140 chr3L 12019324 intron rols - chr3L 12019394 intron rols - chr3L 12019464 intron rols - chr3L_6_12015001 chr3L_12015001 RAL-776 887 chr3L 12052708 12052738 chr3L 12052797 12052827 5 89 4.0 3.5 3.8 1.0 119 chr3L 12052708 intron rols - chr3L 12052768 intron rols - chr3L 12052827 intron rols - chr3L_5_12050001 chr3L_12050001 RAL-776 888 chr3L 12170790 12170824 chr3L 12170872 12170905 5 81 0.5 0.0 0.2 4.2 115 chr3L 12170790 intron Rh7 - chr3L 12170848 intron Rh7 - chr3L 12170905 intron Rh7 - chr3L_5_12170001 chr3L_12170001 RAL-776 889 chr3L 12286773 12286785 chr3L 12286851 12286864 4 79 5.5 0.0 2.8 1.1 91 chr3L 12286773 intergenic not near genes chr3L 12286818 intergenic not near genes chr3L 12286864 intergenic not near genes chr3L_4_12285001 chr3L_12285001 RAL-776 890 chr3L 12302062 12302083 chr3L 12302149 12302170 5 87 2.0 0.5 1.2 2.3 108 chr3L 12302062 intergenic CR44551 -,CR44550 + chr3L 12302116 intergenic CR44551 -,CR44550 + chr3L 12302170 3` UTR CR44551 - chr3L_5_12300001 chr3L_12300001 RAL-776 891 chr3L 12304098 12304114 chr3L 12304172 12304190 8 75 3.0 6.5 4.8 1.4 92 chr3L 12304098 intergenic not near genes chr3L 12304144 intergenic not near genes chr3L 12304190 intergenic not near genes chr3L_8_12300001 chr3L_12300001 RAL-776 892 chr3L 12353931 12353952 chr3L 12354019 12354040 4 88 2.5 7.0 4.8 0.7 109 chr3L 12353931 intergenic not near genes chr3L 12353986 intergenic not near genes chr3L 12354040 intergenic not near genes chr3L_4_12350001 chr3L_12350001 RAL-776 893 chr3L 12488416 12488444 chr3L 12488543 12488571 6 127 1.5 4.0 2.8 1.6 155 chr3L 12488416 intron CG10660 - chr3L 12488494 intron CG10660 - chr3L 12488571 exon CG10660 - chr3L_6_12485001 chr3L_12485001 RAL-776 894 chr3L 12493885 12493914 chr3L 12493978 12494005 4 92 2.0 3.0 2.5 1.1 120 chr3L 12493885 intron CG10657 - chr3L 12493945 intron CG10657 - chr3L 12494005 intron CG10657 - chr3L_4_12490001 chr3L_12490001 RAL-776 895 chr3L 12647953 12647974 chr3L 12648028 12648050 5 76 1.5 2.5 2.0 1.7 97 chr3L 12647953 5` UTR CR32111 + chr3L 12648002 5` UTR CR32111 + chr3L 12648050 5` UTR CR32111 + chr3L_5_12645001 chr3L_12645001 RAL-776 896 chr3L 12668064 12668090 chr3L 12668149 12668175 5 84 0.0 2.5 1.2 2.3 111 chr3L 12668064 intergenic not near genes chr3L 12668120 intergenic not near genes chr3L 12668175 intergenic not near genes chr3L_5_12665001 chr3L_12665001 RAL-776 897 chr3L 12720333 12720359 chr3L 12720418 12720444 6 85 3.0 1.0 2.0 2.0 111 chr3L 12720333 intergenic not near genes chr3L 12720388 intergenic not near genes chr3L 12720444 intergenic not near genes chr3L_6_12720001 chr3L_12720001 RAL-776 898 chr3L 12801991 12802012 chr3L 12802067 12802083 5 75 4.5 4.0 4.2 1.0 92 chr3L 12801991 intron Atg1 - chr3L 12802037 intron Atg1 - chr3L 12802083 intron Atg1 - chr3L_5_12800001 chr3L_12800001 RAL-776 899 chr3L 12868029 12868056 chr3L 12868115 12868142 9 84 1.0 3.0 2.0 3.0 113 chr3L 12868029 intergenic not near genes chr3L 12868086 intergenic not near genes chr3L 12868142 intergenic not near genes chr3L_9_12865001 chr3L_12865001 RAL-776 900 chr3L 12919284 12919310 chr3L 12924743 12924763 Rt1c 12 5467 3.5 2.5 3.0 3.0 5479 chr3L 12919284 intergenic not near genes chr3L 12922024 intergenic not near genes chr3L 12924763 intergenic not near genes chr3L_12_12920001 chr3L_12920001 RAL-776 901 chr3L 12929734 12929743 chr3L 12930050 12930059 6 316 0.0 2.5 1.2 2.7 325 chr3L 12929734 intergenic not near genes chr3L 12929896 intergenic not near genes chr3L 12930059 intergenic not near genes chr3L_6_12925001 chr3L_12925001 RAL-776 902 chr3L 12955128 12955161 chr3L 12955204 12955237 10 75 2.5 0.0 1.2 4.5 109 chr3L 12955128 intergenic CG10752 - chr3L 12955182 intergenic not near genes chr3L 12955237 intergenic not near genes chr3L_10_12955001 chr3L_12955001 RAL-776 903 chr3L 12957790 12957820 chr3L 12962272 12962302 copia 9 4482 1.5 1.5 1.5 3.6 4512 chr3L 12957790 intergenic not near genes chr3L 12960046 intergenic not near genes chr3L 12962302 intergenic not near genes chr3L_9_12960001 chr3L_12960001 RAL-776 904 chr3L 13007694 13007718 chr3L 13007773 13007796 7 78 0.5 3.0 1.8 2.5 102 chr3L 13007694 exon CG11263 + chr3L 13007745 3` UTR CG11263 + chr3L 13007796 3` UTR CG11263 + chr3L_7_13005001 chr3L_13005001 RAL-776 905 chr3L 13147373 13147401 chr3L 13147450 13147477 7 76 0.0 2.0 1.0 3.5 104 chr3L 13147373 intergenic not near genes chr3L 13147425 intergenic not near genes chr3L 13147477 intergenic not near genes chr3L_7_13145001 chr3L_13145001 RAL-776 906 chr3L 13201318 13201353 chr3L 13201461 13201490 15 139 3.0 3.5 3.2 3.6 172 chr3L 13201318 intergenic not near genes chr3L 13201404 intergenic not near genes chr3L 13201490 intergenic not near genes chr3L_15_13200001 chr3L_13200001 RAL-776 907 chr3L 13223214 13223237 chr3L 13223291 13223314 4 77 0.0 1.0 0.5 2.7 100 chr3L 13223214 intergenic not near genes chr3L 13223264 intergenic not near genes chr3L 13223314 intergenic not near genes chr3L_4_13220001 chr3L_13220001 RAL-776 908 chr3L 13267282 13267295 chr3L 13267395 13267408 6 113 9.5 2.0 5.8 0.9 126 chr3L 13267282 intron caps + chr3L 13267345 intron caps + chr3L 13267408 intron caps + chr3L_6_13265001 chr3L_13265001 RAL-776 909 chr3L 13280295 13280333 chr3L 13280399 13280437 14 104 5.0 2.5 3.8 2.9 142 chr3L 13280295 intergenic not near genes chr3L 13280366 intergenic not near genes chr3L 13280437 intergenic not near genes chr3L_14_13280001 chr3L_13280001 RAL-776 910 chr3L 13525158 13525189 chr3L 13532953 13532984 roo 12 7794 3.5 6.0 4.8 2.1 7826 chr3L 13525158 intergenic not near genes chr3L 13529071 intergenic not near genes chr3L 13532984 intergenic not near genes chr3L_12_13525001 chr3L_13525001 RAL-776 911 chr3L 13566021 13566046 chr3L 13566294 13566319 7 270 6.5 1.0 3.8 1.5 298 chr3L 13566021 intron bru-3 - chr3L 13566170 intron bru-3 - chr3L 13566319 intron bru-3 - chr3L_7_13565001 chr3L_13565001 RAL-776 912 chr3L 13689603 13689633 chr3L 13690226 13690256 8 622 1.0 1.5 1.2 3.6 653 chr3L 13689603 intron bru-3 - chr3L 13689930 intron bru-3 - chr3L 13690256 intron bru-3 - chr3L_8_13685001 chr3L_13685001 RAL-776 913 chr3L 13692586 13692616 chr3L 13692661 13692693 6 76 3.5 1.5 2.5 1.7 107 chr3L 13692586 intron bru-3 - chr3L 13692640 intron bru-3 - chr3L 13692693 intron bru-3 - chr3L_6_13690001 chr3L_13690001 RAL-776 914 chr3L 13740033 13740049 chr3L 13740125 13740141 4 92 4.5 2.5 3.5 0.9 108 chr3L 13740033 intron bru-3 - chr3L 13740087 intron bru-3 - chr3L 13740141 intron bru-3 - chr3L_4_13740001 chr3L_13740001 RAL-776 915 chr3L 13804555 13804578 chr3L 13822841 13822864 roo 6 18286 1.0 3.5 2.2 1.9 18309 chr3L 13804555 intergenic not near genes chr3L 13813710 intergenic not near genes chr3L 13822864 intergenic not near genes chr3L_6_13810001 chr3L_13810001 RAL-776 916 chr3L 13838940 13838954 chr3L 13839159 13839173 4 219 2.5 3.5 3.0 1.0 233 chr3L 13838940 intergenic not near genes chr3L 13839056 intergenic not near genes chr3L 13839173 intergenic not near genes chr3L_4_13835001 chr3L_13835001 RAL-776 917 chr3L 13929603 13929623 chr3L 13929774 13929797 15 176 2.0 2.0 2.0 5.0 194 chr3L 13929603 intron Gl + chr3L 13929700 5` UTR Gl + chr3L 13929797 5` UTR Gl + chr3L_15_13925001 chr3L_13925001 RAL-776 918 chr3L 13988475 13988499 chr3L 13988596 13988620 4 121 1.5 2.0 1.8 1.4 145 chr3L 13988475 intron,3` UTR CG17364 -,CG9040 + chr3L 13988548 intron,3` UTR CG17364 -,CG9040 + chr3L 13988620 intron,3` UTR CG17364 -,CG9040 + chr3L_4_13985001 chr3L_13985001 RAL-776 919 chr3L 14155801 14155832 chr3L 14155892 14155920 5 90 0.5 1.5 1.0 2.5 119 chr3L 14155801 intergenic not near genes chr3L 14155860 intergenic not near genes chr3L 14155920 intergenic not near genes chr3L_5_14155001 chr3L_14155001 RAL-776 920 chr3L 14159445 14159450 chr3L 14159522 14159527 4 76 0.0 0.0 0.0 4.0 82 chr3L 14159445 intergenic not near genes chr3L 14159486 intergenic not near genes chr3L 14159527 intergenic not near genes chr3L_4_14155001 chr3L_14155001 RAL-776 921 chr3L 14245577 14245594 chr3L 14245671 14245688 1360 7 93 3.5 3.0 3.2 1.7 111 chr3L 14245577 3` UTR CR44561 - chr3L 14245632 3` UTR CR44561 - chr3L 14245688 3` UTR CR44561 - chr3L_7_14245001 chr3L_14245001 RAL-776 922 chr3L 14282596 14282605 chr3L 14282670 14282676 5 76 0.0 5.0 2.5 1.4 80 chr3L 14282596 intron fz + chr3L 14282636 intron fz + chr3L 14282676 intron fz + chr3L_5_14280001 chr3L_14280001 RAL-776 923 chr3L 14295986 14296016 chr3L 14296472 14296502 roo 9 485 3.0 1.5 2.2 2.8 516 chr3L 14295986 intron fz + chr3L 14296244 intron fz + chr3L 14296502 intron fz + chr3L_9_14295001 chr3L_14295001 RAL-776 924 chr3L 14338297 14338328 chr3L 14338393 14338424 13 95 1.5 0.0 0.8 7.2 127 chr3L 14338297 intron fz + chr3L 14338360 intron fz + chr3L 14338424 intron fz + chr3L_13_14335001 chr3L_14335001 RAL-776 925 chr3L 14462894 14462904 chr3L 14462982 14462992 4 88 0.0 3.0 1.5 1.6 98 chr3L 14462894 intron bbg - chr3L 14462943 intron bbg - chr3L 14462992 intron bbg - chr3L_4_14460001 chr3L_14460001 RAL-776 926 chr3L 14467124 14467151 chr3L 14467212 14467239 8 88 3.5 4.5 4.0 1.6 115 chr3L 14467124 intron bbg - chr3L 14467182 intron bbg - chr3L 14467239 intron bbg - chr3L_8_14465001 chr3L_14465001 RAL-776 927 chr3L 14486000 14486020 chr3L 14486248 14486268 5 248 8.5 3.5 6.0 0.7 268 chr3L 14486000 intron bbg - chr3L 14486134 intron bbg - chr3L 14486268 intron bbg - chr3L_5_14485001 chr3L_14485001 RAL-776 928 chr3L 14522103 14522130 chr3L 14522201 14522228 4 98 0.0 0.5 0.2 3.3 125 chr3L 14522103 intron bbg - chr3L 14522166 intron bbg - chr3L 14522228 intron bbg - chr3L_4_14520001 chr3L_14520001 RAL-776 929 chr3L 14715725 14715761 chr3L 14715812 14715837 4 84 0.5 1.0 0.8 2.2 112 chr3L 14715725 intron ome + chr3L 14715781 intron ome + chr3L 14715837 intron ome + chr3L_4_14715001 chr3L_14715001 RAL-776 930 chr3L 14721187 14721199 chr3L 14723030 14723042 Rt1c 6 1842 6.0 7.5 6.8 0.8 1855 chr3L 14721187 intron ome + chr3L 14722114 intron ome + chr3L 14723042 intron ome + chr3L_6_14720001 chr3L_14720001 RAL-776 931 chr3L 14861802 14861831 chr3L 14861880 14861910 9 79 3.0 1.5 2.2 2.8 108 chr3L 14861802 intron CG17839 + chr3L 14861856 intron CG17839 + chr3L 14861910 intron CG17839 + chr3L_9_14860001 chr3L_14860001 RAL-776 932 chr3L 14866825 14866836 chr3L 14866916 14866926 6 91 2.0 5.0 3.5 1.3 101 chr3L 14866825 exon CG17839 + chr3L 14866876 intron CG17839 + chr3L 14866926 intron CG17839 + chr3L_6_14865001 chr3L_14865001 RAL-776 933 chr3L 14922101 14922134 chr3L 14922209 14922221 6 104 2.5 2.0 2.2 1.9 120 chr3L 14922101 intron DCX-EMAP + chr3L 14922161 intron DCX-EMAP + chr3L 14922221 intron DCX-EMAP + chr3L_6_14920001 chr3L_14920001 RAL-776 934 chr3L 15053429 15053444 chr3L 15053768 15053782 5 339 0.5 4.5 2.5 1.4 353 chr3L 15053429 intron Sytbeta - chr3L 15053606 intron,3` UTR Sytbeta -,CG18649 - chr3L 15053782 intron,3` UTR Sytbeta -,CG18649 - chr3L_5_15050001 chr3L_15050001 RAL-776 935 chr3L 15054583 15054617 chr3L 15054659 15054693 5 74 0.0 0.5 0.2 4.2 110 chr3L 15054583 intron Sytbeta - chr3L 15054638 intron Sytbeta - chr3L 15054693 intron Sytbeta - chr3L_5_15050001 chr3L_15050001 RAL-776 936 chr3L 15069796 15069812 chr3L 15069929 15069930 4 138 15.0 6.5 10.8 0.3 134 chr3L 15069796 exon cp309 - chr3L 15069863 intron cp309 - chr3L 15069930 intron cp309 - chr3L_4_15065001 chr3L_15065001 RAL-776 937 chr3L 15085066 15085083 chr3L 15086232 15086249 1360 4 1166 0.5 5.0 2.8 1.1 1183 chr3L 15085066 intron cp309 - chr3L 15085658 intron cp309 - chr3L 15086249 intron cp309 - chr3L_4_15085001 chr3L_15085001 RAL-776 938 chr3L 15234802 15234834 chr3L 15234985 15235017 9 181 1.0 3.0 2.0 3.0 215 chr3L 15234802 intergenic not near genes chr3L 15234910 intergenic not near genes chr3L 15235017 intergenic not near genes chr3L_9_15230001 chr3L_15230001 RAL-776 939 chr3L 15261787 15261797 chr3L 15261869 15261879 4 82 7.5 3.0 5.2 0.6 92 chr3L 15261787 intergenic not near genes chr3L 15261833 intergenic not near genes chr3L 15261879 intergenic not near genes chr3L_4_15260001 chr3L_15260001 RAL-776 940 chr3L 15406020 15406055 chr3L 15406102 15406128 6 78 0.5 2.5 1.5 2.4 108 chr3L 15406020 intergenic not near genes chr3L 15406074 intergenic not near genes chr3L 15406128 intergenic not near genes chr3L_6_15405001 chr3L_15405001 RAL-776 941 chr3L 15418499 15418521 chr3L 15418585 15418598 9 85 4.5 2.5 3.5 2.0 99 chr3L 15418499 intergenic not near genes chr3L 15418548 intergenic not near genes chr3L 15418598 intergenic not near genes chr3L_9_15415001 chr3L_15415001 RAL-776 942 chr3L 15423764 15423775 chr3L 15426608 15426619 opus 7 2844 2.0 2.5 2.2 2.2 2855 chr3L 15423764 intergenic not near genes chr3L 15425192 intergenic not near genes chr3L 15426619 intergenic not near genes chr3L_7_15425001 chr3L_15425001 RAL-776 943 chr3L 15444650 15444684 chr3L 15444744 15444778 7 94 3.5 3.5 3.5 1.6 128 chr3L 15444650 intergenic not near genes chr3L 15444714 intergenic not near genes chr3L 15444778 intergenic not near genes chr3L_7_15440001 chr3L_15440001 RAL-776 944 chr3L 15460288 15460306 chr3L 15460566 15460585 4 283 17.0 10.5 13.8 0.3 297 chr3L 15460288 intergenic not near genes chr3L 15460436 intergenic not near genes chr3L 15460585 intergenic not near genes chr3L_4_15460001 chr3L_15460001 RAL-776 945 chr3L 15463316 15463334 chr3L 15463412 15463430 4 96 6.0 5.0 5.5 0.6 114 chr3L 15463316 intergenic not near genes chr3L 15463373 intergenic not near genes chr3L 15463430 intergenic not near genes chr3L_4_15460001 chr3L_15460001 RAL-776 946 chr3L 15466038 15466132 chr3L 15466120 15466226 7 88 0.0 0.0 0.0 7.0 188 chr3L 15466038 intergenic not near genes chr3L 15466132 intergenic not near genes chr3L 15466226 intergenic not near genes chr3L_7_15465001 chr3L_15465001 RAL-776 947 chr3L 15511305 15511314 chr3L 15511385 15511394 4 80 1.0 5.0 3.0 1.0 89 chr3L 15511305 intron Eip71CD + chr3L 15511350 intron Eip71CD + chr3L 15511394 intron Eip71CD + chr3L_4_15510001 chr3L_15510001 RAL-776 948 chr3L 15541626 15541646 chr3L 15541717 15541737 5 91 3.0 1.5 2.2 1.6 111 chr3L 15541626 intron CrebA + chr3L 15541682 intron CrebA + chr3L 15541737 intron CrebA + chr3L_5_15540001 chr3L_15540001 RAL-776 949 chr3L 15641784 15641814 chr3L 15641869 15641899 4 85 0.0 1.5 0.8 2.2 115 chr3L 15641784 intron comm3 - chr3L 15641842 intron comm3 - chr3L 15641899 intron comm3 - chr3L_4_15640001 chr3L_15640001 RAL-776 950 chr3L 15691415 15691444 chr3L 15691497 15691497 4 69 1.5 2.0 1.8 1.4 82 chr3L 15691415 intron CG34451 - chr3L 15691456 intron CG34451 - chr3L 15691497 intron CG34451 - chr3L_4_15690001 chr3L_15690001 RAL-776 951 chr3L 15747566 15747576 chr3L 15747642 15747652 5 76 1.5 1.5 1.5 2.0 86 chr3L 15747566 5` UTR CR45240 + chr3L 15747609 5` UTR CR45240 + chr3L 15747652 5` UTR CR45240 + chr3L_5_15745001 chr3L_15745001 RAL-776 952 chr3L 15754502 15754616 chr3L 15754590 15754699 7 83 0.0 0.0 0.0 7.0 197 chr3L 15754502 intergenic not near genes chr3L 15754600 intergenic not near genes chr3L 15754699 intergenic not near genes chr3L_7_15750001 chr3L_15750001 RAL-776 953 chr3L 15773853 15773877 chr3L 15773933 15773957 10 74 1.5 4.0 2.8 2.6 104 chr3L 15773853 intergenic not near genes chr3L 15773905 intergenic not near genes chr3L 15773957 intergenic not near genes chr3L_10_15770001 chr3L_15770001 RAL-776 954 chr3L 15786080 15786110 chr3L 15786179 15786212 7 100 1.5 2.0 1.8 2.5 132 chr3L 15786080 intergenic not near genes chr3L 15786146 intergenic not near genes chr3L 15786212 intergenic not near genes chr3L_7_15785001 chr3L_15785001 RAL-776 955 chr3L 15818027 15818056 chr3L 15820651 15820665 4 2617 27.0 24.0 25.5 0.2 2638 chr3L 15818027 exon CkIIalpha-i1 + chr3L 15819346 3` UTR Dcp2 - chr3L 15820665 3` UTR Dcp2 - chr3L_4_15815001 chr3L_15815001 RAL-776 956 chr3L 15834994 15835015 chr3L 15835148 15835170 9 151 4.5 3.0 3.8 1.9 176 chr3L 15834994 intron CG18081 - chr3L 15835082 intron CG18081 - chr3L 15835170 intron CG18081 - chr3L_9_15835001 chr3L_15835001 RAL-776 957 chr3L 15871593 15871608 chr3L 15871677 15871692 8 83 2.0 4.0 3.0 2.0 99 chr3L 15871593 intron pHCl - chr3L 15871642 intron pHCl - chr3L 15871692 intron pHCl - chr3L_8_15870001 chr3L_15870001 RAL-776 958 chr3L 15895745 15895778 chr3L 15895857 15895890 18 112 1.0 2.5 1.8 6.4 145 chr3L 15895745 intron pHCl - chr3L 15895818 intron pHCl - chr3L 15895890 intron pHCl - chr3L_18_15895001 chr3L_15895001 RAL-776 959 chr3L 15981674 15981682 chr3L 15981760 15981768 6 86 4.0 2.5 3.2 1.4 94 chr3L 15981674 intron,3` UTR brm -,CG17027 + chr3L 15981721 intron,3` UTR brm -,CG17027 + chr3L 15981768 intron,3` UTR brm -,CG17027 + chr3L_6_15980001 chr3L_15980001 RAL-776 960 chr3L 16162595 16162626 chr3L 16162679 16162710 14 84 2.5 2.0 2.2 4.4 115 chr3L 16162595 intron CG5151 - chr3L 16162652 intron CG5151 - chr3L 16162710 intron CG5151 - chr3L_14_16160001 chr3L_16160001 RAL-776 961 chr3L 16184122 16184140 chr3L 16188928 16188939 X-element 4 4810 2.0 2.5 2.2 1.2 4817 chr3L 16184122 intergenic not near genes chr3L 16186530 intergenic not near genes chr3L 16188939 intergenic not near genes chr3L_4_16185001 chr3L_16185001 RAL-776 962 chr3L 16198400 16198423 chr3L 16206731 16206754 9 8331 19.0 15.5 17.2 0.5 8354 chr3L 16198400 intron CG33687 + chr3L 16202577 intergenic not near genes chr3L 16206754 intergenic not near genes chr3L_9_16200001 chr3L_16200001 RAL-776 963 chr3L 16212809 16212844 chr3L 16212900 16212935 5 91 2.5 0.0 1.2 2.3 126 chr3L 16212809 intergenic CG13073 - chr3L 16212872 intergenic CG13073 - chr3L 16212935 intergenic CG13073 - chr3L_5_16210001 chr3L_16210001 RAL-776 964 chr3L 16236345 16236367 chr3L 16236460 16236482 7 115 2.0 2.0 2.0 2.3 137 chr3L 16236345 3` UTR l(3)72Dp + chr3L 16236414 3` UTR l(3)72Dp + chr3L 16236482 3` UTR l(3)72Dp + chr3L_7_16235001 chr3L_16235001 RAL-776 965 chr3L 16244841 16244864 chr3L 16244924 16244947 8 82 1.5 4.0 2.8 2.1 106 chr3L 16244841 intergenic not near genes chr3L 16244894 intergenic not near genes chr3L 16244947 intergenic not near genes chr3L_8_16240001 chr3L_16240001 RAL-776 966 chr3L 16443854 16443877 chr3L 16446194 16446217 Doc 7 2336 1.0 2.0 1.5 2.8 2363 chr3L 16443854 intron,intron CG33158 +,dsx-c73A - chr3L 16445036 intron,intron CG33158 +,dsx-c73A - chr3L 16446217 intron,intron CG33158 +,dsx-c73A - chr3L_7_16445001 chr3L_16445001 RAL-776 967 chr3L 16493983 16494010 chr3L 16494500 16494527 jockey 8 514 4.5 3.0 3.8 1.7 544 chr3L 16493983 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494255 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L 16494527 intron,intron,intron CG33158 +,CG42514 -,CG43373 - chr3L_8_16490001 chr3L_16490001 RAL-776 968 chr3L 16540063 16540087 chr3L 16540151 16540174 6 87 0.5 2.5 1.5 2.4 111 chr3L 16540063 intron CG43373 - chr3L 16540118 intron CG43373 - chr3L 16540174 intron CG43373 - chr3L_6_16540001 chr3L_16540001 RAL-776 969 chr3L 16569927 16569960 chr3L 16570008 16570037 8 80 2.0 4.5 3.2 1.9 110 chr3L 16569927 intron Mipp1 - chr3L 16569982 intron Mipp1 - chr3L 16570037 intron Mipp1 - chr3L_8_16565001 chr3L_16565001 RAL-776 970 chr3L 16616511 16616540 chr3L 16621836 16621868 297 7 5327 1.5 4.5 3.0 1.8 5357 chr3L 16616511 3` UTR Abl - chr3L 16619190 3` UTR Abl - chr3L 16621868 3` UTR Abl - chr3L_7_16615001 chr3L_16615001 RAL-776 971 chr3L 16772492 16772512 chr3L 16772582 16772602 7 90 3.5 3.0 3.2 1.7 110 chr3L 16772492 intron Nrt + chr3L 16772547 intron Nrt + chr3L 16772602 intron Nrt + chr3L_7_16770001 chr3L_16770001 RAL-776 972 chr3L 16817491 16817512 chr3L 16817711 16817736 10 224 4.5 2.0 3.2 2.4 245 chr3L 16817491 intron,intron nudC +,CG13024 - chr3L 16817614 intron,intron nudC +,CG13024 - chr3L 16817736 intron,intron nudC +,CG13024 - chr3L_10_16815001 chr3L_16815001 RAL-776 973 chr3L 16817878 16817907 chr3L 16818018 16818047 10 140 3.5 2.5 3.0 2.5 169 chr3L 16817878 intron,intron nudC +,CG13024 - chr3L 16817962 intron,intron nudC +,CG13024 - chr3L 16818047 intron,intron nudC +,CG13024 - chr3L_10_16815001 chr3L_16815001 RAL-776 974 chr3L 16845024 16845043 chr3L 16845137 16845156 4 113 1.5 4.0 2.8 1.1 132 chr3L 16845024 intergenic CG9669 -,CG9715 +,TSG101 + chr3L 16845090 intergenic CG9669 -,CG9715 + chr3L 16845156 intergenic CG9669 -,CG9715 + chr3L_4_16845001 chr3L_16845001 RAL-776 975 chr3L 16861029 16861051 chr3L 16861131 16861153 6 102 3.0 4.0 3.5 1.3 124 chr3L 16861029 intron,exon Rh4 -,CG13029 + chr3L 16861091 intron,intron Rh4 -,CG13029 + chr3L 16861153 intron,exon Rh4 -,CG13029 + chr3L_6_16860001 chr3L_16860001 RAL-776 976 chr3L 16945725 16945756 chr3L 16954878 16954909 roo 9 9150 6.0 4.5 5.2 1.5 9184 chr3L 16945725 exon Obp73a + chr3L 16950317 intergenic not near genes chr3L 16954909 5` UTR Nc73EF + chr3L_9_16950001 chr3L_16950001 RAL-776 977 chr3L 17026794 17026821 chr3L 17026875 17026902 6 81 6.0 3.5 4.8 1.0 108 chr3L 17026794 exon Fit2 + chr3L 17026848 3` UTR Fit2 + chr3L 17026902 3` UTR Fit2 + chr3L_6_17025001 chr3L_17025001 RAL-776 978 chr3L 17085005 17085021 chr3L 17094154 17094169 roo 4 9149 1.5 2.0 1.8 1.4 9164 chr3L 17085005 intron Rbp6 - chr3L 17089587 intron Rbp6 - chr3L 17094169 intron Rbp6 - chr3L_4_17085001 chr3L_17085001 RAL-776 979 chr3L 17110324 17110338 chr3L 17110405 17110419 7 80 6.0 4.0 5.0 1.2 95 chr3L 17110324 intron Rbp6 - chr3L 17110372 intron Rbp6 - chr3L 17110419 intron Rbp6 - chr3L_7_17110001 chr3L_17110001 RAL-776 980 chr3L 17120653 17120942 chr3L 17120729 17121019 18 75 4.0 1.5 2.8 4.7 366 chr3L 17120653 intron Rbp6 - chr3L 17120836 intron Rbp6 - chr3L 17121019 intron Rbp6 - chr3L_18_17120001 chr3L_17120001 RAL-776 981 chr3L 17135465 17135482 chr3L 17135570 17135587 4 103 2.5 3.0 2.8 1.1 122 chr3L 17135465 intron Rbp6 - chr3L 17135526 intron Rbp6 - chr3L 17135587 intron Rbp6 - chr3L_4_17135001 chr3L_17135001 RAL-776 982 chr3L 17193389 17193420 chr3L 17193465 17193495 5 76 2.0 0.5 1.2 2.3 106 chr3L 17193389 intron Rbp6 - chr3L 17193442 intron Rbp6 - chr3L 17193495 intron Rbp6 - chr3L_5_17190001 chr3L_17190001 RAL-776 983 chr3L 17202114 17202134 chr3L 17202196 17202213 5 81 2.0 4.0 3.0 1.2 99 chr3L 17202114 intron Rbp6 - chr3L 17202164 intron Rbp6 - chr3L 17202213 intron Rbp6 - chr3L_5_17200001 chr3L_17200001 RAL-776 984 chr3L 17301276 17301303 chr3L 17301364 17301390 7 88 0.0 2.0 1.0 3.5 114 chr3L 17301276 intergenic not near genes chr3L 17301333 intergenic not near genes chr3L 17301390 intergenic not near genes chr3L_7_17300001 chr3L_17300001 RAL-776 985 chr3L 17316807 17316828 chr3L 17316904 17316921 5 95 1.5 4.5 3.0 1.2 114 chr3L 17316807 intergenic not near genes chr3L 17316864 intergenic not near genes chr3L 17316921 intergenic not near genes chr3L_5_17315001 chr3L_17315001 RAL-776 986 chr3L 17367434 17367459 chr3L 17367528 17367552 5 94 4.0 1.0 2.5 1.4 118 chr3L 17367434 intergenic CR45688 +,Cad74A - chr3L 17367493 intergenic CR45688 +,Cad74A - chr3L 17367552 intergenic CR45688 +,Cad74A - chr3L_5_17365001 chr3L_17365001 RAL-776 987 chr3L 17485232 17485262 chr3L 17485313 17485343 6 81 0.5 3.5 2.0 2.0 111 chr3L 17485232 intron CG6333 - chr3L 17485288 intron CG6333 - chr3L 17485343 intron CG6333 - chr3L_6_17485001 chr3L_17485001 RAL-776 988 chr3L 17486010 17486030 chr3L 17486084 17486110 7 75 6.0 2.5 4.2 1.3 100 chr3L 17486010 intron CG6333 - chr3L 17486060 intron CG6333 - chr3L 17486110 intron CG6333 - chr3L_7_17485001 chr3L_17485001 RAL-776 989 chr3L 17510744 17510760 chr3L 17510828 17510844 4 84 3.5 2.5 3.0 1.0 100 chr3L 17510744 exon Oatp74D + chr3L 17510794 intron Oatp74D + chr3L 17510844 intron Oatp74D + chr3L_4_17510001 chr3L_17510001 RAL-776 990 chr3L 17516985 17516996 chr3L 17524543 17524551 412 5 7556 6.0 3.5 4.8 0.9 7566 chr3L 17516985 intron CG7564 + chr3L 17520768 intron CG7564 + chr3L 17524551 3` UTR CG7564 + chr3L_5_17520001 chr3L_17520001 RAL-776 991 chr3L 17535811 17535845 chr3L 17535925 17535959 12 113 2.5 6.0 4.2 2.3 148 chr3L 17535811 intron Nedd4 + chr3L 17535885 intron Nedd4 + chr3L 17535959 intron Nedd4 + chr3L_12_17535001 chr3L_17535001 RAL-776 992 chr3L 17612218 17612244 chr3L 17612302 17612329 13 80 3.0 5.0 4.0 2.6 111 chr3L 17612218 intron Eip74EF - chr3L 17612274 intron Eip74EF - chr3L 17612329 intron Eip74EF - chr3L_13_17610001 chr3L_17610001 RAL-776 993 chr3L 17691991 17691995 chr3L 17692073 17692078 4 82 0.0 0.0 0.0 4.0 87 chr3L 17691991 intron Ccn + chr3L 17692034 intron Ccn + chr3L 17692078 intron Ccn + chr3L_4_17690001 chr3L_17690001 RAL-776 994 chr3L 17702365 17702385 chr3L 17702448 17702468 4 84 1.5 5.0 3.2 1.0 103 chr3L 17702365 intron Ccn + chr3L 17702416 intron Ccn + chr3L 17702468 intron Ccn + chr3L_4_17700001 chr3L_17700001 RAL-776 995 chr3L 17789849 17789871 chr3L 17789925 17789947 6 76 1.0 2.0 1.5 2.4 98 chr3L 17789849 intergenic not near genes chr3L 17789898 intergenic not near genes chr3L 17789947 intergenic not near genes chr3L_6_17785001 chr3L_17785001 RAL-776 996 chr3L 17837625 17837654 chr3L 17837713 17837742 18 87 2.5 3.5 3.0 4.5 117 chr3L 17837625 exon Grd + chr3L 17837684 intron Grd + chr3L 17837742 exon Grd + chr3L_18_17835001 chr3L_17835001 RAL-776 997 chr3L 17914323 17914352 chr3L 17914982 17915008 9 658 4.0 2.5 3.2 2.1 685 chr3L 17914323 intergenic not near genes chr3L 17914666 intergenic not near genes chr3L 17915008 intergenic not near genes chr3L_9_17910001 chr3L_17910001 RAL-776 998 chr3L 17918380 17918399 chr3L 17921183 17921188 opus 6 2800 3.5 1.0 2.2 1.9 2808 chr3L 17918380 intergenic not near genes chr3L 17919784 intergenic not near genes chr3L 17921188 intergenic not near genes chr3L_6_17915001 chr3L_17915001 RAL-776 999 chr3L 17939063 17939095 chr3L 17939161 17939195 11 98 3.0 4.0 3.5 2.4 132 chr3L 17939063 intron CG43174 + chr3L 17939129 intron CG43174 + chr3L 17939195 intron CG43174 + chr3L_11_17935001 chr3L_17935001 RAL-776 1000 chr3L 18002728 18002743 chr3L 18002814 18002830 5 87 0.0 4.0 2.0 1.7 102 chr3L 18002728 intron Eip75B - chr3L 18002779 intron Eip75B - chr3L 18002830 intron Eip75B - chr3L_5_18000001 chr3L_18000001 RAL-776 1001 chr3L 18016158 18016178 chr3L 18016272 18016296 4 117 1.0 3.5 2.2 1.2 138 chr3L 18016158 intron Eip75B - chr3L 18016227 intron Eip75B - chr3L 18016296 intron Eip75B - chr3L_4_18015001 chr3L_18015001 RAL-776 1002 chr3L 18020568 18020576 chr3L 18020674 18020682 4 106 1.5 0.5 1.0 2.0 114 chr3L 18020568 intron Eip75B - chr3L 18020625 intron Eip75B - chr3L 18020682 intron Eip75B - chr3L_4_18020001 chr3L_18020001 RAL-776 1003 chr3L 18021360 18021389 chr3L 18021448 18021481 17 90 3.0 4.0 3.5 3.8 121 chr3L 18021360 intron Eip75B - chr3L 18021420 intron Eip75B - chr3L 18021481 intron Eip75B - chr3L_17_18020001 chr3L_18020001 RAL-776 1004 chr3L 18029969 18029982 chr3L 18030045 18030059 4 76 2.0 0.5 1.2 1.8 90 chr3L 18029969 intron Eip75B - chr3L 18030014 intron Eip75B - chr3L 18030059 intron Eip75B - chr3L_4_18030001 chr3L_18030001 RAL-776 1005 chr3L 18092785 18092805 chr3L 18092900 18092920 8 115 3.0 0.0 1.5 3.2 135 chr3L 18092785 intron CG13698 - chr3L 18092852 intron CG13698 - chr3L 18092920 intron CG13698 - chr3L_8_18090001 chr3L_18090001 RAL-776 1006 chr3L 18119657 18119678 chr3L 18119755 18119776 9 98 0.0 5.0 2.5 2.6 119 chr3L 18119657 intron CG7341 + chr3L 18119716 intron CG7341 + chr3L 18119776 intron CG7341 + chr3L_9_18115001 chr3L_18115001 RAL-776 1007 chr3L 18221101 18221128 chr3L 18221178 18221209 7 80 0.5 0.0 0.2 5.8 108 chr3L 18221101 intergenic not near genes chr3L 18221155 intergenic not near genes chr3L 18221209 intergenic not near genes chr3L_7_18220001 chr3L_18220001 RAL-776 1008 chr3L 18248952 18248988 chr3L 18249050 18249086 12 98 1.0 1.5 1.2 5.5 134 chr3L 18248952 intergenic not near genes chr3L 18249019 intergenic not near genes chr3L 18249086 intergenic not near genes chr3L_12_18245001 chr3L_18245001 RAL-776 1009 chr3L 18375981 18376004 chr3L 18376066 18376089 10 85 0.0 4.5 2.2 3.1 108 chr3L 18375981 intergenic not near genes chr3L 18376035 intergenic not near genes chr3L 18376089 intergenic not near genes chr3L_10_18375001 chr3L_18375001 RAL-776 1010 chr3L 18408731 18408755 chr3L 18408817 18408841 8 84 3.0 1.0 2.0 2.7 110 chr3L 18408731 intergenic not near genes chr3L 18408786 intergenic not near genes chr3L 18408841 intergenic not near genes chr3L_8_18405001 chr3L_18405001 RAL-776 1011 chr3L 18456278 18456297 chr3L 18456364 18456385 9 88 4.0 1.0 2.5 2.6 107 chr3L 18456278 intergenic CR44670 - chr3L 18456332 intergenic CR44670 - chr3L 18456385 intergenic CR44670 - chr3L_9_18455001 chr3L_18455001 RAL-776 1012 chr3L 18506147 18506161 chr3L 18509610 18509622 F-element 4 3462 1.0 1.5 1.2 1.8 3475 chr3L 18506147 intergenic not near genes chr3L 18507884 intergenic not near genes chr3L 18509622 intergenic not near genes chr3L_4_18505001 chr3L_18505001 RAL-776 1013 chr3L 18514908 18514936 chr3L 18520098 18520127 BS 8 5190 5.0 3.0 4.0 1.6 5219 chr3L 18514908 intergenic not near genes chr3L 18517518 intergenic not near genes chr3L 18520127 intergenic not near genes chr3L_8_18515001 chr3L_18515001 RAL-776 1014 chr3L 18528629 18528650 chr3L 18537790 18537811 roo 7 9161 4.0 0.5 2.2 2.2 9182 chr3L 18528629 intergenic not near genes chr3L 18533220 intergenic not near genes chr3L 18537811 intergenic not near genes chr3L_7_18530001 chr3L_18530001 RAL-776 1015 chr3L 18656182 18656218 chr3L 18656267 18656303 18 84 4.5 3.5 4.0 3.6 121 chr3L 18656182 intron MYPT-75D + chr3L 18656242 intron MYPT-75D + chr3L 18656303 intron MYPT-75D + chr3L_18_18655001 chr3L_18655001 RAL-776 1016 chr3L 18721770 18721806 chr3L 18721861 18721897 6 91 3.5 4.0 3.8 1.2 127 chr3L 18721770 intergenic CG12477 - chr3L 18721834 intergenic CG12477 - chr3L 18721897 3` UTR CG12477 - chr3L_6_18720001 chr3L_18720001 RAL-776 1017 chr3L 18733591 18733612 chr3L 18733781 18733800 12 189 0.5 2.5 1.5 4.8 209 chr3L 18733591 intergenic not near genes chr3L 18733696 intergenic not near genes chr3L 18733800 intergenic not near genes chr3L_12_18730001 chr3L_18730001 RAL-776 1018 chr3L 18737328 18737357 chr3L 18737441 18737470 7 113 3.5 4.5 4.0 1.4 142 chr3L 18737328 intergenic not near genes chr3L 18737399 intergenic not near genes chr3L 18737470 intergenic not near genes chr3L_7_18735001 chr3L_18735001 RAL-776 1019 chr3L 18772406 18772442 chr3L 18781087 18781123 roo 15 8681 5.0 6.0 5.5 2.3 8717 chr3L 18772406 intron ftz-f1 - chr3L 18776764 intron ftz-f1 - chr3L 18781123 intron ftz-f1 - chr3L_15_18775001 chr3L_18775001 RAL-776 1020 chr3L 18784393 18784403 chr3L 18784482 18784492 4 89 2.0 2.5 2.2 1.2 99 chr3L 18784393 intron ftz-f1 - chr3L 18784442 intron ftz-f1 - chr3L 18784492 intron ftz-f1 - chr3L_4_18780001 chr3L_18780001 RAL-776 1021 chr3L 18810146 18810173 chr3L 18810223 18810255 8 79 2.0 1.5 1.8 2.9 109 chr3L 18810146 intron CG14073 - chr3L 18810200 intron CG14073 - chr3L 18810255 intron CG14073 - chr3L_8_18810001 chr3L_18810001 RAL-776 1022 chr3L 18832617 18832648 chr3L 18832695 18832726 9 78 1.5 5.0 3.2 2.1 109 chr3L 18832617 intron Indy - chr3L 18832672 intron Indy - chr3L 18832726 intron Indy - chr3L_9_18830001 chr3L_18830001 RAL-776 1023 chr3L 18924479 18924502 chr3L 18924555 18924573 4 75 3.0 1.0 2.0 1.3 94 chr3L 18924479 intron CG32204 - chr3L 18924526 intron CG32204 - chr3L 18924573 intron CG32204 - chr3L_4_18920001 chr3L_18920001 RAL-776 1024 chr3L 18957300 18957324 chr3L 18957375 18957403 9 79 5.5 4.5 5.0 1.5 103 chr3L 18957300 intergenic not near genes chr3L 18957352 intergenic not near genes chr3L 18957403 intergenic not near genes chr3L_9_18955001 chr3L_18955001 RAL-776 1025 chr3L 18969572 18969576 chr3L 18969630 18969651 4 71 2.0 2.5 2.2 1.2 79 chr3L 18969572 intergenic not near genes chr3L 18969612 intergenic not near genes chr3L 18969651 intergenic not near genes chr3L_4_18965001 chr3L_18965001 RAL-776 1026 chr3L 19008848 19008872 chr3L 19009186 19009210 jockey 6 337 4.5 4.5 4.5 1.1 362 chr3L 19008848 intron nkd - chr3L 19009029 intron nkd - chr3L 19009210 intron nkd - chr3L_6_19005001 chr3L_19005001 RAL-776 1027 chr3L 19082035 19082071 chr3L 19082137 19082171 14 101 0.5 4.5 2.5 4.0 136 chr3L 19082035 intron Mkp3 - chr3L 19082103 intron Mkp3 - chr3L 19082171 intron Mkp3 - chr3L_14_19080001 chr3L_19080001 RAL-776 1028 chr3L 19083419 19083447 chr3L 19083499 19083527 7 79 3.5 2.0 2.8 1.8 108 chr3L 19083419 intron Mkp3 - chr3L 19083473 intron Mkp3 - chr3L 19083527 intron Mkp3 - chr3L_7_19080001 chr3L_19080001 RAL-776 1029 chr3L 19100463 19100483 chr3L 19101126 19101146 4 664 12.5 20.5 16.5 0.2 683 chr3L 19100463 intergenic Gem2 - chr3L 19100804 intergenic Gem2 - chr3L 19101146 intergenic not near genes chr3L_4_19100001 chr3L_19100001 RAL-776 1030 chr3L 19115642 19115665 chr3L 19115822 19115845 BS 6 180 6.0 3.5 4.8 1.0 203 chr3L 19115642 intron CG14082 - chr3L 19115744 intron CG14082 - chr3L 19115845 intron CG14082 - chr3L_6_19115001 chr3L_19115001 RAL-776 1031 chr3L 19117044 19117076 chr3L 19124488 19124511 mdg1 12 7443 2.5 3.0 2.8 3.2 7467 chr3L 19117044 intron CG14082 - chr3L 19120778 intron CG14082 - chr3L 19124511 intron CG14082 - chr3L_12_19120001 chr3L_19120001 RAL-776 1032 chr3L 19135092 19135124 chr3L 19135244 19135276 5 148 1.5 2.5 2.0 1.7 184 chr3L 19135092 intron CG14082 - chr3L 19135184 intron CG14082 - chr3L 19135276 intron CG14082 - chr3L_5_19135001 chr3L_19135001 RAL-776 1033 chr3L 19182393 19182419 chr3L 19182473 19182500 9 80 0.0 2.5 1.2 4.1 107 chr3L 19182393 intron fz2 - chr3L 19182446 intron fz2 - chr3L 19182500 intron fz2 - chr3L_9_19180001 chr3L_19180001 RAL-776 1034 chr3L 19216514 19216535 chr3L 19216591 19216612 7 77 1.0 0.0 0.5 4.7 98 chr3L 19216514 intron fz2 - chr3L 19216563 intron fz2 - chr3L 19216612 intron fz2 - chr3L_7_19215001 chr3L_19215001 RAL-776 1035 chr3L 19238390 19238421 chr3L 19238593 19238607 7 200 2.0 3.0 2.5 2.0 217 chr3L 19238390 intergenic not near genes chr3L 19238498 intergenic not near genes chr3L 19238607 intergenic not near genes chr3L_7_19235001 chr3L_19235001 RAL-776 1036 chr3L 19417816 19417831 chr3L 19417896 19417911 6 79 1.0 6.0 3.5 1.3 95 chr3L 19417816 intergenic not near genes chr3L 19417864 intergenic not near genes chr3L 19417911 intergenic not near genes chr3L_6_19415001 chr3L_19415001 RAL-776 1037 chr3L 19430412 19430433 chr3L 19430490 19430511 6 78 0.0 5.0 2.5 1.7 99 chr3L 19430412 intergenic not near genes chr3L 19430462 intergenic not near genes chr3L 19430511 intergenic not near genes chr3L_6_19430001 chr3L_19430001 RAL-776 1038 chr3L 19455364 19455391 chr3L 19455652 19455678 9 288 2.0 2.5 2.2 2.8 314 chr3L 19455364 5` UTR CR45434 + chr3L 19455521 5` UTR CR45434 + chr3L 19455678 intergenic CR45434 + chr3L_9_19455001 chr3L_19455001 RAL-776 1039 chr3L 19493230 19493251 chr3L 19493307 19493328 6 77 0.5 2.5 1.5 2.4 98 chr3L 19493230 intron CG9449 - chr3L 19493279 intron CG9449 - chr3L 19493328 intron CG9449 - chr3L_6_19490001 chr3L_19490001 RAL-776 1040 chr3L 19579654 19579680 chr3L 19579766 19579794 9 114 2.0 0.5 1.2 4.1 140 chr3L 19579654 intron Shal - chr3L 19579724 intron Shal - chr3L 19579794 intron Shal - chr3L_9_19575001 chr3L_19575001 RAL-776 1041 chr3L 19848502 19848535 chr3L 19857692 19857725 roo 12 9189 2.5 3.0 2.8 3.2 9223 chr3L 19848502 intron Papss + chr3L 19853114 intron Papss + chr3L 19857725 intron Papss + chr3L_12_19850001 chr3L_19850001 RAL-776 1042 chr3L 19861824 19861851 chr3L 19863611 19863639 S-element 10 1786 2.5 3.5 3.0 2.5 1815 chr3L 19861824 5` UTR CR45433 + chr3L 19862732 intergenic not near genes chr3L 19863639 intergenic not near genes chr3L_10_19860001 chr3L_19860001 RAL-776 1043 chr3L 19933542 19933558 chr3L 19934364 19934380 4 822 3.5 2.5 3.0 1.0 838 chr3L 19933542 intergenic CR45678 + chr3L 19933961 5` UTR CR45678 + chr3L 19934380 intergenic CR45678 + chr3L_4_19930001 chr3L_19930001 RAL-776 1044 chr3L 20061539 20061553 chr3L 20062183 20062212 6 656 3.5 1.5 2.5 1.7 673 chr3L 20061539 intron sNPF-R - chr3L 20061876 intron sNPF-R - chr3L 20062212 intron sNPF-R - chr3L_6_20060001 chr3L_20060001 RAL-776 1045 chr3L 20077833 20077864 chr3L 20079839 20079870 9 2010 13.5 17.5 15.5 0.5 2037 chr3L 20077833 intron sNPF-R - chr3L 20078852 intron sNPF-R - chr3L 20079870 intron sNPF-R - chr3L_9_20075001 chr3L_20075001 RAL-776 1046 chr3L 20113477 20113505 chr3L 20113572 20113599 5 95 1.5 0.5 1.0 2.5 122 chr3L 20113477 intergenic not near genes chr3L 20113538 intergenic not near genes chr3L 20113599 intergenic not near genes chr3L_5_20110001 chr3L_20110001 RAL-776 1047 chr3L 20113661 20113688 chr3L 20122918 20122945 roo 4 9256 1.0 1.5 1.2 1.8 9284 chr3L 20113661 intergenic not near genes chr3L 20118303 intergenic not near genes chr3L 20122945 intergenic not near genes chr3L_4_20115001 chr3L_20115001 RAL-776 1048 chr3L 20257340 20257360 chr3L 20258453 20258480 pogo 5 1119 0.5 1.0 0.8 2.8 1140 chr3L 20257340 intron rdgC + chr3L 20257910 intron rdgC + chr3L 20258480 intron rdgC + chr3L_5_20255001 chr3L_20255001 RAL-776 1049 chr3L 20283677 20283706 chr3L 20283760 20283790 7 83 1.5 0.5 1.0 3.5 113 chr3L 20283677 intron gogo - chr3L 20283734 intron gogo - chr3L 20283790 intron gogo - chr3L_7_20280001 chr3L_20280001 RAL-776 1050 chr3L 20476752 20476773 chr3L 20484351 20484372 springer 6 7599 2.5 2.0 2.2 1.9 7620 chr3L 20476752 3` UTR isoQC + chr3L 20480562 intergenic not near genes chr3L 20484372 3` UTR ZnT77C - chr3L_6_20480001 chr3L_20480001 RAL-776 1051 chr3L 20590065 20590097 chr3L 20590604 20590616 412 4 534 2.0 1.5 1.8 1.4 551 chr3L 20590065 intergenic not near genes chr3L 20590340 intergenic not near genes chr3L 20590616 intergenic not near genes chr3L_4_20590001 chr3L_20590001 RAL-776 1052 chr3L 20710766 20710792 chr3L 20710843 20710869 10 77 0.5 5.0 2.8 2.6 103 chr3L 20710766 intergenic not near genes chr3L 20710818 intergenic not near genes chr3L 20710869 intergenic not near genes chr3L_10_20710001 chr3L_20710001 RAL-776 1053 chr3L 20821308 20821311 chr3L 20824777 20824780 NOF 4 3469 1.5 6.0 3.8 0.8 3472 chr3L 20821308 intron Pka-R1 + chr3L 20823044 intron Pka-R1 + chr3L 20824780 intron Pka-R1 + chr3L_4_20820001 chr3L_20820001 RAL-776 1054 chr3L 20849275 20849293 chr3L 20849354 20849372 7 79 3.0 2.0 2.5 2.0 97 chr3L 20849275 intron CG32432 - chr3L 20849324 intron CG32432 - chr3L 20849372 intron CG32432 - chr3L_7_20845001 chr3L_20845001 RAL-776 1055 chr3L 20858083 20858102 chr3L 20858182 20858201 4 99 0.5 0.0 0.2 3.3 118 chr3L 20858083 intron CG32432 - chr3L 20858142 intron CG32432 - chr3L 20858201 intron CG32432 - chr3L_4_20855001 chr3L_20855001 RAL-776 1056 chr3L 20948667 20948692 chr3L 20948757 20948782 6 90 1.0 1.0 1.0 3.0 115 chr3L 20948667 intron fng - chr3L 20948724 intron fng - chr3L 20948782 intron fng - chr3L_6_20945001 chr3L_20945001 RAL-776 1057 chr3L 20979158 20979176 chr3L 20979540 20979558 6 382 3.5 3.0 3.2 1.4 400 chr3L 20979158 intergenic not near genes chr3L 20979358 intergenic not near genes chr3L 20979558 intergenic not near genes chr3L_6_20975001 chr3L_20975001 RAL-776 1058 chr3L 20986760 20986784 chr3L 20986838 20986862 8 77 3.0 1.5 2.2 2.5 102 chr3L 20986760 intergenic not near genes chr3L 20986811 intergenic not near genes chr3L 20986862 intergenic not near genes chr3L_8_20985001 chr3L_20985001 RAL-776 1059 chr3L 21110182 21110204 chr3L 21110434 21110458 11 254 5.5 2.5 4.0 2.2 276 chr3L 21110182 intron ko - chr3L 21110320 intron ko - chr3L 21110458 intron ko - chr3L_11_21110001 chr3L_21110001 RAL-776 1060 chr3L 21151865 21151887 chr3L 21156949 21156971 flea 6 5084 6.0 0.5 3.2 1.4 5106 chr3L 21151865 intron Ac78C - chr3L 21154418 intron Ac78C - chr3L 21156971 intron Ac78C - chr3L_6_21150001 chr3L_21150001 RAL-776 1061 chr3L 21158594 21158622 chr3L 21158670 21158683 9 73 1.5 4.0 2.8 2.4 89 chr3L 21158594 intron Ac78C - chr3L 21158638 intron Ac78C - chr3L 21158683 intron Ac78C - chr3L_9_21155001 chr3L_21155001 RAL-776 1062 chr3L 21243752 21243768 chr3L 21251314 21251325 412 5 7561 3.0 6.0 4.5 0.9 7573 chr3L 21243752 intron Eip78C + chr3L 21247538 intron Eip78C + chr3L 21251325 intron Eip78C + chr3L_5_21245001 chr3L_21245001 RAL-776 1063 chr3L 21256542 21256561 chr3L 21256636 21256654 6 94 1.0 4.0 2.5 1.7 112 chr3L 21256542 intron Eip78C + chr3L 21256598 intron Eip78C + chr3L 21256654 intron Eip78C + chr3L_6_21255001 chr3L_21255001 RAL-776 1064 chr3L 21303710 21303732 chr3L 21303797 21303819 5 87 3.0 2.0 2.5 1.4 109 chr3L 21303710 intron CG11309 - chr3L 21303764 intron CG11309 - chr3L 21303819 intron CG11309 - chr3L_5_21300001 chr3L_21300001 RAL-776 1065 chr3L 21372726 21372740 chr3L 21379234 21379248 McClintock 4 6508 3.0 4.5 3.8 0.8 6522 chr3L 21372726 intergenic not near genes chr3L 21375987 intergenic not near genes chr3L 21379248 intergenic not near genes chr3L_4_21375001 chr3L_21375001 RAL-776 1066 chr3L 21406993 21407028 chr3L 21407072 21407107 6 79 1.5 1.0 1.2 2.7 114 chr3L 21406993 intron rgn + chr3L 21407050 intron rgn + chr3L 21407107 intron rgn + chr3L_6_21405001 chr3L_21405001 RAL-776 1067 chr3L 21498833 21498869 chr3L 21500468 21500483 1360 7 1633 3.0 3.5 3.2 1.7 1650 chr3L 21498833 intron Glg1 - chr3L 21499658 intron Glg1 - chr3L 21500483 intron Glg1 - chr3L_7_21495001 chr3L_21495001 RAL-776 1068 chr3L 21509651 21509685 chr3L 21509728 21509757 8 76 2.5 3.0 2.8 2.1 106 chr3L 21509651 intron M6 + chr3L 21509704 intron M6 + chr3L 21509757 intron M6 + chr3L_8_21505001 chr3L_21505001 RAL-776 1069 chr3L 21637327 21637352 chr3L 21637413 21637439 7 86 3.0 2.5 2.8 1.8 112 chr3L 21637327 intron CG32444 + chr3L 21637383 intron CG32444 + chr3L 21637439 intron CG32444 + chr3L_7_21635001 chr3L_21635001 RAL-776 1070 chr3L 21649775 21649802 chr3L 21649999 21650026 5 223 1.0 3.0 2.0 1.7 251 chr3L 21649775 intron CG43980 + chr3L 21649900 intron CG43980 + chr3L 21650026 intron CG43980 + chr3L_5_21645001 chr3L_21645001 RAL-776 1071 chr3L 21671057 21671088 chr3L 21671205 21671236 6 148 0.5 1.0 0.8 3.3 179 chr3L 21671057 intergenic not near genes chr3L 21671146 intergenic not near genes chr3L 21671236 intergenic not near genes chr3L_6_21670001 chr3L_21670001 RAL-776 1072 chr3L 21749314 21749333 chr3L 21754473 21754493 Doc 6 5160 6.0 8.0 7.0 0.8 5179 chr3L 21749314 intron Syn1 - chr3L 21751904 intron Syn1 - chr3L 21754493 intron Syn1 - chr3L_6_21750001 chr3L_21750001 RAL-776 1073 chr3L 21773102 21773107 chr3L 22847701 22847706 4 1074599 3.0 4.0 3.5 0.9 1074604 chr3L 21773102 intron CG42689 + chr3L 22310404 intron Ten-m - chr3L 22847706 intergenic not near genes chr3L_4_22310001 chr3L_22310001 RAL-776 1074 chr3L 21776674 21776702 chr3L 21776761 21776789 5 87 0.5 1.5 1.0 2.5 115 chr3L 21776674 intron,intron CG42689 +,CG42552 + chr3L 21776732 intron,intron CG42689 +,CG42552 + chr3L 21776789 intron,intron CG42689 +,CG42552 + chr3L_5_21775001 chr3L_21775001 RAL-776 1075 chr3L 21836726 21836762 chr3L 21836812 21836819 4 79 1.0 2.5 1.8 1.4 93 chr3L 21836726 3` UTR P5CDh1 - chr3L 21836772 3` UTR P5CDh1 - chr3L 21836819 3` UTR P5CDh1 - chr3L_4_21835001 chr3L_21835001 RAL-776 1076 chr3L 21852263 21852281 chr3L 21852350 21852373 5 90 6.5 1.0 3.8 1.0 110 chr3L 21852263 intron mub + chr3L 21852318 intron mub + chr3L 21852373 intron mub + chr3L_5_21850001 chr3L_21850001 RAL-776 1077 chr3L 21901028 21901040 chr3L 21901121 21901133 9 93 3.5 7.0 5.2 1.5 105 chr3L 21901028 intron mub + chr3L 21901080 intron mub + chr3L 21901133 intron mub + chr3L_9_21900001 chr3L_21900001 RAL-776 1078 chr3L 22016365 22016379 chr3L 22016481 22016495 8 116 10.0 1.5 5.8 1.2 130 chr3L 22016365 intergenic not near genes chr3L 22016430 intergenic not near genes chr3L 22016495 intergenic not near genes chr3L_8_22015001 chr3L_22015001 RAL-776 1079 chr3L 22033693 22033722 chr3L 22033770 22033800 6 78 1.5 2.0 1.8 2.1 107 chr3L 22033693 intergenic not near genes chr3L 22033746 intergenic not near genes chr3L 22033800 intergenic not near genes chr3L_6_22030001 chr3L_22030001 RAL-776 1080 chr3L 22046182 22046214 chr3L 22046285 22046317 8 102 3.0 3.5 3.2 1.9 135 chr3L 22046182 intron Oct-TyrR + chr3L 22046250 intron Oct-TyrR + chr3L 22046317 intron Oct-TyrR + chr3L_8_22045001 chr3L_22045001 RAL-776 1081 chr3L 22099680 22099704 chr3L 22105866 22105890 3S18 5 6182 3.5 2.0 2.8 1.3 6210 chr3L 22099680 intergenic not near genes chr3L 22102785 intergenic not near genes chr3L 22105890 intergenic not near genes chr3L_5_22100001 chr3L_22100001 RAL-776 1082 chr3L 22137532 22137554 chr3L 22137609 22137629 5 74 0.5 2.5 1.5 2.0 97 chr3L 22137532 intron olf413 + chr3L 22137580 intron olf413 + chr3L 22137629 intron olf413 + chr3L_5_22135001 chr3L_22135001 RAL-776 1083 chr3L 22166448 22166476 chr3L 22166526 22166554 7 74 2.0 1.5 1.8 2.5 106 chr3L 22166448 intron olf413 + chr3L 22166501 intron olf413 + chr3L 22166554 intron olf413 + chr3L_7_22165001 chr3L_22165001 RAL-776 1084 chr3L 22169453 22169487 chr3L 22169545 22169561 10 91 2.0 3.5 2.8 2.6 108 chr3L 22169453 intron olf413 + chr3L 22169507 intron olf413 + chr3L 22169561 intron olf413 + chr3L_10_22165001 chr3L_22165001 RAL-776 1085 chr3L 22447201 22447228 chr3L 22447290 22447319 5 90 2.5 3.0 2.8 1.3 118 chr3L 22447201 intergenic not near genes chr3L 22447260 intergenic not near genes chr3L 22447319 intergenic not near genes chr3L_5_22445001 chr3L_22445001 RAL-776 1086 chr3L 22554423 22554454 chr3L 22554499 22554518 12 75 5.5 4.5 5.0 2.0 95 chr3L 22554423 intergenic not near genes chr3L 22554470 intergenic not near genes chr3L 22554518 intergenic not near genes chr3L_12_22550001 chr3L_22550001 RAL-776 1087 chr3L 22569576 22569604 chr3L 22569673 22569702 16 97 3.0 9.5 6.2 2.2 126 chr3L 22569576 intergenic not near genes chr3L 22569639 intergenic not near genes chr3L 22569702 intergenic not near genes chr3L_16_22565001 chr3L_22565001 RAL-776 1088 chr3L 22577639 22577649 chr3L 22582407 22582437 Doc 8 4783 2.5 6.0 4.2 1.5 4798 chr3L 22577639 intergenic not near genes chr3L 22580038 intergenic not near genes chr3L 22582437 3` UTR CG14459 - chr3L_8_22580001 chr3L_22580001 RAL-776 1089 chr3L 22617191 22617215 chr3L 22624643 22624667 blood 10 7451 5.0 1.0 3.0 2.5 7476 chr3L 22617191 intron CG14459 - chr3L 22620929 intron CG14459 - chr3L 22624667 intron CG14459 - chr3L_10_22620001 chr3L_22620001 RAL-776 1090 chr3L 22732468 22732495 chr3L 22732549 22732576 8 80 1.5 5.5 3.5 1.8 108 chr3L 22732468 intron CG11367 + chr3L 22732522 intron CG11367 + chr3L 22732576 intron CG11367 + chr3L_8_22730001 chr3L_22730001 RAL-776 1091 chr3L 22756397 22756426 chr3L 22756474 22756503 15 76 6.5 3.0 4.8 2.6 106 chr3L 22756397 intron SPoCk + chr3L 22756450 intron SPoCk + chr3L 22756503 intron SPoCk + chr3L_15_22755001 chr3L_22755001 RAL-776 1092 chr3L 22771639 22771666 chr3L 22771718 22771747 6 81 0.0 3.5 1.8 2.1 108 chr3L 22771639 intron SPoCk + chr3L 22771693 intron SPoCk + chr3L 22771747 intron SPoCk + chr3L_6_22770001 chr3L_22770001 RAL-776 1093 chr3L 22853700 22853723 chr3L 22853786 22853809 9 85 2.0 5.5 3.8 1.9 109 chr3L 22853700 5` UTR CR43426 + chr3L 22853754 5` UTR CR43426 + chr3L 22853809 5` UTR CR43426 + chr3L_9_22850001 chr3L_22850001 RAL-776 1094 chr3L 22865981 22866015 chr3L 22867113 22867148 Doc 19 1133 1.5 2.5 2.0 6.3 1167 chr3L 22865981 intron CG33170 + chr3L 22866564 intron CG33170 + chr3L 22867148 intron CG33170 + chr3L_19_22865001 chr3L_22865001 RAL-776 1095 chr3L 22889621 22889646 chr3L 22889698 22889717 14 75 6.0 4.0 5.0 2.3 96 chr3L 22889621 intron slif + chr3L 22889669 intron slif + chr3L 22889717 intron slif + chr3L_14_22885001 chr3L_22885001 RAL-776 1096 chr3L 22921372 22921403 chr3L 22921448 22921479 9 76 4.5 2.5 3.5 2.0 107 chr3L 22921372 intron CG12768 + chr3L 22921426 intron CG12768 + chr3L 22921479 intron CG12768 + chr3L_9_22920001 chr3L_22920001 RAL-776 1097 chr3L 22974364 22974385 chr3L 22974443 22974464 10 78 5.0 0.5 2.8 2.6 100 chr3L 22974364 intergenic not near genes chr3L 22974414 intergenic not near genes chr3L 22974464 intergenic not near genes chr3L_10_22970001 chr3L_22970001 RAL-776 1098 chr3L 23004906 23004941 chr3L 23005231 23005267 7 323 0.5 3.0 1.8 2.5 361 chr3L 23004906 intron nrm + chr3L 23005086 intron nrm + chr3L 23005267 intron nrm + chr3L_7_23005001 chr3L_23005001 RAL-776 1099 chr3L 23042223 23042251 chr3L 23048976 23049004 gypsy6 10 6751 7.0 0.0 3.5 2.2 6781 chr3L 23042223 intergenic not near genes chr3L 23045614 intergenic not near genes chr3L 23049004 intergenic not near genes chr3L_10_23045001 chr3L_23045001 RAL-776 1100 chr3L 23182820 23182851 chr3L 23182894 23182926 12 76 0.0 9.5 4.8 2.1 106 chr3L 23182820 intron CG34031 + chr3L 23182873 intron CG34031 + chr3L 23182926 intron CG34031 + chr3L_12_23180001 chr3L_23180001 RAL-776 1101 chr3L 23255114 23255146 chr3L 23255231 23255263 6 104 1.5 4.5 3.0 1.5 149 chr3L 23255114 intron nAChRalpha4 + chr3L 23255188 intron nAChRalpha4 + chr3L 23255263 intron nAChRalpha4 + chr3L_6_23255001 chr3L_23255001 RAL-776 1102 chr3L 23286818 23286837 chr3L 23286909 23286928 5 91 1.0 1.0 1.0 2.5 110 chr3L 23286818 3` UTR nAChRalpha4 + chr3L 23286873 3` UTR nAChRalpha4 + chr3L 23286928 3` UTR nAChRalpha4 + chr3L_5_23285001 chr3L_23285001 RAL-776 1103 chr3L 23384420 23384452 chr3L 23384713 23384744 13 293 2.0 4.5 3.2 3.1 324 chr3L 23384420 intergenic not near genes chr3L 23384582 intergenic not near genes chr3L 23384744 intergenic not near genes chr3L_13_23380001 chr3L_23380001 RAL-776 1104 chr3L 23428240 23428272 chr3L 23428320 23428352 11 78 5.0 2.5 3.8 2.3 112 chr3L 23428240 intergenic not near genes chr3L 23428296 intergenic not near genes chr3L 23428352 intergenic not near genes chr3L_11_23425001 chr3L_23425001 RAL-776 1105 chr3L 23468039 23468049 chr3L 23468125 23468135 4 86 2.5 5.5 4.0 0.8 96 chr3L 23468039 intergenic not near genes chr3L 23468087 intergenic not near genes chr3L 23468135 intergenic not near genes chr3L_4_23465001 chr3L_23465001 RAL-776 1106 chr3L 23485859 23485888 chr3L 23485937 23485966 9 78 1.5 1.5 1.5 3.6 107 chr3L 23485859 intergenic not near genes chr3L 23485912 intergenic not near genes chr3L 23485966 intergenic not near genes chr3L_9_23485001 chr3L_23485001 RAL-776 1107 chr3L 23592727 23592743 chr3L 23592869 23592890 8 142 2.0 3.5 2.8 2.1 163 chr3L 23592727 intron AGO3 + chr3L 23592808 intron AGO3 + chr3L 23592890 intron AGO3 + chr3L_8_23590001 chr3L_23590001 RAL-776 1108 chr3L 23824026 23824033 chr3L 23824437 23824446 4 412 6.0 3.0 4.5 0.7 420 chr3L 23824026 intergenic not near genes chr3L 23824236 intergenic not near genes chr3L 23824446 intergenic not near genes chr3L_4_23820001 chr3L_23820001 RAL-776 1109 chr3L 23854299 23854315 chr3L 23854394 23854413 10 98 3.5 5.0 4.2 1.9 114 chr3L 23854299 intron CG40470 - chr3L 23854356 intron CG40470 - chr3L 23854413 intron CG40470 - chr3L_10_23850001 chr3L_23850001 RAL-776 1110 chr3L 24012413 24012438 chr3L 24020754 24020774 roo 4 8338 3.0 1.5 2.2 1.2 8361 chr3L 24012413 intergenic not near genes chr3L 24016594 intergenic not near genes chr3L 24020774 intergenic not near genes chr3L_4_24015001 chr3L_24015001 RAL-776 1111 chr3L 24021283 24021306 chr3L 24022440 24022460 1360 7 1155 1.5 2.0 1.8 2.5 1177 chr3L 24021283 intergenic not near genes chr3L 24021872 intergenic not near genes chr3L 24022460 intergenic not near genes chr3L_7_24020001 chr3L_24020001 RAL-776 1112 chr3L 24321803 24321823 chr3L 24322032 24322066 7 239 1.5 4.5 3.0 1.8 263 chr3L 24321803 intergenic not near genes chr3L 24321934 intergenic not near genes chr3L 24322066 intergenic not near genes chr3L_7_24320001 chr3L_24320001 RAL-776 1113 chr3L 25628499 25628525 chr3L 25633270 25633296 F-element 8 4771 6.5 2.5 4.5 1.5 4797 chr3L 25628499 intron CG41343 - chr3L 25630898 intron CG41343 - chr3L 25633296 intron CG41343 - chr3L_8_25630001 chr3L_25630001 RAL-776 1114 chr3L 25842479 25842498 chr3L 25842565 25842584 7 86 2.0 4.5 3.2 1.7 105 chr3L 25842479 intron CG40178 - chr3L 25842532 intron CG40178 - chr3L 25842584 intron CG40178 - chr3L_7_25840001 chr3L_25840001 RAL-776 1115 chr3L 24948771 24948772 chr3L 25934974 25934975 diver2 4 986203 18.5 14.5 16.5 0.2 986204 chr3L 24948771 intergenic not near genes chr3L 25441873 intergenic not near genes chr3L 25934975 intron CG40178 - chr3L_4_25440001 chr3L_25440001 RAL-776 1116 chr3L 25995928 25995951 chr3L 25995996 25996032 6 78 3.0 4.0 3.5 1.3 104 chr3L 25995928 intron CG40178 - chr3L 25995980 intron CG40178 - chr3L 25996032 intron CG40178 - chr3L_6_25995001 chr3L_25995001 RAL-776 1117 chr3L 26694925 26694957 chr3L 26695005 26695037 8 78 3.0 2.0 2.5 2.3 112 chr3L 26694925 intergenic not near genes chr3L 26694981 intergenic not near genes chr3L 26695037 intergenic not near genes chr3L_8_26690001 chr3L_26690001 RAL-776 1118 chr3L 27390691 27390711 chr3L 27390770 27390783 10 78 45.0 43.0 44.0 0.2 92 chr3L 27390691 intron Dbp80 + chr3L 27390737 intron Dbp80 + chr3L 27390783 intron Dbp80 + chr3L_10_27390001 chr3L_27390001 RAL-776 1119 chr3L 27727642 27727661 chr3L 27728749 27728766 G-element 5 1105 3.5 1.0 2.2 1.6 1124 chr3L 27727642 intergenic not near genes chr3L 27728204 intergenic not near genes chr3L 27728766 intergenic not near genes chr3L_5_27725001 chr3L_27725001 RAL-776 1120 chr3L 27980705 27980733 chr3L 27985499 27985528 Doc 4 4794 1.0 0.5 0.8 2.2 4823 chr3L 27980705 intron CG17514 - chr3L 27983116 intron CG17514 - chr3L 27985528 intron CG17514 - chr3L_4_27980001 chr3L_27980001 RAL-776 1121 chr3R 1202781 1202795 chr3R 1203141 1203155 4 360 3.0 1.0 2.0 1.3 374 chr3R 1202781 intergenic not near genes chr3R 1202968 intergenic not near genes chr3R 1203155 intergenic not near genes chr3R_4_1200001 chr3R_1200001 RAL-776 1122 chr3R 1443431 1443460 chr3R 1443507 1443518 6 71 2.0 1.5 1.8 2.1 87 chr3R 1443431 intron CG40155 + chr3R 1443474 intron CG40155 + chr3R 1443518 intron CG40155 + chr3R_6_1440001 chr3R_1440001 RAL-776 1123 chr3R 1939050 1939059 chr3R 1939144 1939149 4 92 0.5 1.0 0.8 2.2 99 chr3R 1939050 intergenic not near genes chr3R 1939100 intergenic not near genes chr3R 1939149 intergenic not near genes chr3R_4_1935001 chr3R_1935001 RAL-776 1124 chr3R 2534159 2534167 chr3R 2541708 2541735 5 7558 10.0 14.5 12.2 0.4 7576 chr3R 2534159 intergenic not near genes chr3R 2537947 intergenic not near genes chr3R 2541735 intergenic not near genes chr3R_5_2535001 chr3R_2535001 RAL-776 1125 chr3R 3267248 3267271 chr3R 3267432 3267452 6 183 16.0 17.0 16.5 0.3 204 chr3R 3267248 intergenic not near genes chr3R 3267350 intergenic not near genes chr3R 3267452 intergenic not near genes chr3R_6_3265001 chr3R_3265001 RAL-776 1126 chr3R 3752746 3752759 chr3R 3752829 3752842 4 83 3.5 6.5 5.0 0.7 96 chr3R 3752746 intergenic CG41128 + chr3R 3752794 intergenic CG41128 + chr3R 3752842 intergenic CG41128 + chr3R_4_3750001 chr3R_3750001 RAL-776 1127 chr3R 4065095 4065123 chr3R 4065307 4065335 6 212 1.5 0.0 0.8 3.3 240 chr3R 4065095 intergenic not near genes chr3R 4065215 intergenic not near genes chr3R 4065335 intergenic not near genes chr3R_6_4065001 chr3R_4065001 RAL-776 1128 chr3R 4129795 4129816 chr3R 4129887 4129899 4 90 1.5 0.5 1.0 2.0 104 chr3R 4129795 intron Gfat1 + chr3R 4129847 intron Gfat1 + chr3R 4129899 intron Gfat1 + chr3R_4_4125001 chr3R_4125001 RAL-776 1129 chr3R 4366759 4366787 chr3R 4375142 4375170 roo 7 8383 1.5 0.5 1.0 3.5 8411 chr3R 4366759 3` UTR CG1090 + chr3R 4370964 intergenic not near genes chr3R 4375170 5` UTR CR44922 + chr3R_7_4370001 chr3R_4370001 RAL-776 1130 chr3R 4408409 4408442 chr3R 4412713 4412746 Juan 5 4301 3.5 1.5 2.5 1.4 4337 chr3R 4408409 intron CG32944 - chr3R 4410578 intron CG32944 - chr3R 4412746 intron CG32944 - chr3R_5_4410001 chr3R_4410001 RAL-776 1131 chr3R 4568589 4568718 chr3R 4568677 4568805 6 86 4.0 7.5 5.8 0.9 216 chr3R 4568589 intergenic not near genes chr3R 4568697 intergenic not near genes chr3R 4568805 intergenic not near genes chr3R_6_4565001 chr3R_4565001 RAL-776 1132 chr3R 4594341 4594368 chr3R 4594423 4594431 4 77 1.5 0.0 0.8 2.2 90 chr3R 4594341 intergenic not near genes chr3R 4594386 intergenic not near genes chr3R 4594431 intergenic not near genes chr3R_4_4590001 chr3R_4590001 RAL-776 1133 chr3R 4609560 4609581 chr3R 4610724 4610745 1360 12 1164 2.5 7.5 5.0 2.0 1185 chr3R 4609560 intergenic not near genes chr3R 4610152 intergenic not near genes chr3R 4610745 intergenic not near genes chr3R_12_4610001 chr3R_4610001 RAL-776 1134 chr3R 4681827 4681859 chr3R 4681906 4681939 10 79 3.5 7.5 5.5 1.5 112 chr3R 4681827 intron CG43427 + chr3R 4681883 intron CG43427 + chr3R 4681939 intron CG43427 + chr3R_10_4680001 chr3R_4680001 RAL-776 1135 chr3R 4683178 4683206 chr3R 4684937 4684965 S-element 9 1757 3.0 2.5 2.8 2.4 1787 chr3R 4683178 intron CG43427 + chr3R 4684072 intron CG43427 + chr3R 4684965 intron CG43427 + chr3R_9_4680001 chr3R_4680001 RAL-776 1136 chr3R 4753238 4753275 chr3R 4757541 4757565 F-element 11 4296 3.5 4.5 4.0 2.2 4327 chr3R 4753238 intron,intron atms +,CG44098 - chr3R 4755402 intron,intron atms +,CG44098 - chr3R 4757565 intron,exon atms +,CG44098 - chr3R_11_4755001 chr3R_4755001 RAL-776 1137 chr3R 4759722 4759755 chr3R 4761219 4761246 hopper2 13 1495 3.5 8.0 5.8 1.9 1524 chr3R 4759722 intron,intron atms +,CG44098 - chr3R 4760484 intron,intron atms +,CG44098 - chr3R 4761246 intron,intron atms +,CG44098 - chr3R_13_4760001 chr3R_4760001 RAL-776 1138 chr3R 4861574 4861597 chr3R 4861655 4861678 5 78 4.5 2.5 3.5 1.1 104 chr3R 4861574 intron opa + chr3R 4861626 intron opa + chr3R 4861678 intron opa + chr3R_5_4860001 chr3R_4860001 RAL-776 1139 chr3R 4885400 4885419 chr3R 4885491 4885510 7 91 1.0 2.5 1.8 2.5 110 chr3R 4885400 intergenic not near genes chr3R 4885455 intergenic not near genes chr3R 4885510 intergenic not near genes chr3R_7_4885001 chr3R_4885001 RAL-776 1140 chr3R 4896290 4896325 chr3R 4896383 4896418 9 93 1.0 2.0 1.5 3.6 128 chr3R 4896290 intergenic CR45580 + chr3R 4896354 intergenic CR45580 + chr3R 4896418 5` UTR CR45580 + chr3R_9_4895001 chr3R_4895001 RAL-776 1141 chr3R 4913729 4913743 chr3R 4913817 4913834 5 88 5.5 4.0 4.8 0.9 105 chr3R 4913729 intron Cdep + chr3R 4913782 intron Cdep + chr3R 4913834 intron Cdep + chr3R_5_4910001 chr3R_4910001 RAL-776 1142 chr3R 4943611 4943618 chr3R 4943716 4943723 5 105 6.5 1.0 3.8 1.0 112 chr3R 4943611 intron Cdep + chr3R 4943667 intron Cdep + chr3R 4943723 intron Cdep + chr3R_5_4940001 chr3R_4940001 RAL-776 1143 chr3R 4966008 4966037 chr3R 4966100 4966129 8 92 3.0 2.5 2.8 2.1 121 chr3R 4966008 intron CG1124 + chr3R 4966068 intron CG1124 + chr3R 4966129 intron CG1124 + chr3R_8_4965001 chr3R_4965001 RAL-776 1144 chr3R 5045845 5045875 chr3R 5052947 5052977 HMS-Beagle 5 7099 4.0 4.5 4.2 1.0 7132 chr3R 5045845 intron CR43635 - chr3R 5049411 intergenic not near genes chr3R 5052977 intergenic CR45588 - chr3R_5_5045001 chr3R_5045001 RAL-776 1145 chr3R 5067982 5068013 chr3R 5073498 5073524 mdg3 10 5516 4.0 2.5 3.2 2.4 5542 chr3R 5067982 intergenic not near genes chr3R 5070753 intergenic not near genes chr3R 5073524 intergenic not near genes chr3R_10_5070001 chr3R_5070001 RAL-776 1146 chr3R 5158144 5158163 chr3R 5158237 5158256 9 92 5.0 4.0 4.5 1.6 112 chr3R 5158144 intron dpr16 + chr3R 5158200 intron dpr16 + chr3R 5158256 intron dpr16 + chr3R_9_5155001 chr3R_5155001 RAL-776 1147 chr3R 5206815 5206841 chr3R 5206955 5206983 13 142 2.5 4.5 3.5 2.9 168 chr3R 5206815 intron cno - chr3R 5206899 intron cno - chr3R 5206983 intron cno - chr3R_13_5205001 chr3R_5205001 RAL-776 1148 chr3R 5278088 5278119 chr3R 5278168 5278200 15 81 2.5 4.5 3.5 3.3 112 chr3R 5278088 intron mtd - chr3R 5278144 intron mtd - chr3R 5278200 intron mtd - chr3R_15_5275001 chr3R_5275001 RAL-776 1149 chr3R 5338401 5338429 chr3R 5343577 5343606 Rt1c 7 5177 2.5 3.5 3.0 1.8 5205 chr3R 5338401 intron mtd - chr3R 5341004 intron mtd - chr3R 5343606 intron mtd - chr3R_7_5340001 chr3R_5340001 RAL-776 1150 chr3R 5445961 5445994 chr3R 5452420 5452454 Burdock 12 6460 1.0 2.5 1.8 4.3 6493 chr3R 5445961 intron CG14669 + chr3R 5449208 intron CG14669 + chr3R 5452454 intron CG14669 + chr3R_12_5445001 chr3R_5445001 RAL-776 1151 chr3R 5627150 5627158 chr3R 5627561 5627569 5 411 7.0 5.0 6.0 0.7 419 chr3R 5627150 intergenic not near genes chr3R 5627360 intergenic CG31551 + chr3R 5627569 intergenic CG31551 + chr3R_5_5625001 chr3R_5625001 RAL-776 1152 chr3R 5627159 5627180 chr3R 5627559 5627591 7 405 3.0 5.0 4.0 1.4 432 chr3R 5627159 intergenic not near genes chr3R 5627375 intergenic CG31551 + chr3R 5627591 intergenic CG31551 + chr3R_7_5625001 chr3R_5625001 RAL-776 1153 chr3R 5734653 5734681 chr3R 5734741 5734770 10 89 3.0 7.0 5.0 1.7 117 chr3R 5734653 exon CG1239 + chr3R 5734712 3` UTR CG2100 - chr3R 5734770 exon CG2100 - chr3R_10_5730001 chr3R_5730001 RAL-776 1154 chr3R 5746021 5746044 chr3R 5746261 5746285 pogo 7 240 1.5 2.5 2.0 2.3 264 chr3R 5746021 3` UTR Madm + chr3R 5746153 3` UTR Madm + chr3R 5746285 3` UTR Madm + chr3R_7_5745001 chr3R_5745001 RAL-776 1155 chr3R 5772381 5772409 chr3R 5772539 5772566 8 157 1.0 2.5 1.8 2.9 185 chr3R 5772381 intron CG2082 - chr3R 5772474 intron CG2082 - chr3R 5772566 intron CG2082 - chr3R_8_5770001 chr3R_5770001 RAL-776 1156 chr3R 5822378 5822407 chr3R 5823545 5823574 1360 9 1167 2.5 2.5 2.5 2.6 1196 chr3R 5822378 3` UTR CG2023 - chr3R 5822976 3` UTR CG2023 - chr3R 5823574 3` UTR CG2023 - chr3R_9_5820001 chr3R_5820001 RAL-776 1157 chr3R 5904098 5904128 chr3R 5904210 5904240 5 112 1.0 3.0 2.0 1.7 142 chr3R 5904098 intron CG34113 - chr3R 5904169 intron CG34113 - chr3R 5904240 intron CG34113 - chr3R_5_5900001 chr3R_5900001 RAL-776 1158 chr3R 5916065 5916090 chr3R 5916185 5916210 7 120 4.0 5.5 4.8 1.2 145 chr3R 5916065 intron CG34113 - chr3R 5916138 intron CG34113 - chr3R 5916210 intron CG34113 - chr3R_7_5915001 chr3R_5915001 RAL-776 1159 chr3R 5917468 5917500 chr3R 5917807 5917839 8 339 0.5 0.5 0.5 5.3 371 chr3R 5917468 intron CG34113 - chr3R 5917654 intron CG34113 - chr3R 5917839 intron CG34113 - chr3R_8_5915001 chr3R_5915001 RAL-776 1160 chr3R 5927560 5927586 chr3R 5927800 5927826 pogo 6 239 3.0 4.5 3.8 1.2 266 chr3R 5927560 intron CG34113 - chr3R 5927693 intron CG34113 - chr3R 5927826 intron CG34113 - chr3R_6_5925001 chr3R_5925001 RAL-776 1161 chr3R 5954323 5954351 chr3R 5954399 5954427 4 72 1.5 1.5 1.5 1.6 104 chr3R 5954323 intron CG34113 - chr3R 5954375 intron CG34113 - chr3R 5954427 intron CG34113 - chr3R_4_5950001 chr3R_5950001 RAL-776 1162 chr3R 5971221 5971247 chr3R 5971578 5971605 7 358 0.5 3.0 1.8 2.5 384 chr3R 5971221 intergenic not near genes chr3R 5971413 intergenic not near genes chr3R 5971605 intergenic not near genes chr3R_7_5970001 chr3R_5970001 RAL-776 1163 chr3R 6015960 6015995 chr3R 6024441 6024476 Tirant 8 8480 2.5 4.0 3.2 1.9 8516 chr3R 6015960 intergenic not near genes chr3R 6020218 intergenic not near genes chr3R 6024476 intergenic not near genes chr3R_8_6020001 chr3R_6020001 RAL-776 1164 chr3R 6028199 6028215 chr3R 6028278 6028297 8 78 8.5 5.5 7.0 1.0 98 chr3R 6028199 intergenic not near genes chr3R 6028248 intergenic not near genes chr3R 6028297 intergenic not near genes chr3R_8_6025001 chr3R_6025001 RAL-776 1165 chr3R 6045140 6045171 chr3R 6045215 6045247 6 76 3.0 8.5 5.8 0.9 107 chr3R 6045140 intergenic not near genes chr3R 6045194 intergenic not near genes chr3R 6045247 intergenic not near genes chr3R_6_6045001 chr3R_6045001 RAL-776 1166 chr3R 6158527 6158537 chr3R 6167092 6167120 Tirant 5 8576 6.0 3.0 4.5 0.9 8593 chr3R 6158527 intergenic not near genes chr3R 6162824 intergenic not near genes chr3R 6167120 intergenic CG1077 + chr3R_5_6160001 chr3R_6160001 RAL-776 1167 chr3R 6206292 6206318 chr3R 6206505 6206535 BS 8 216 3.5 5.5 4.5 1.5 243 chr3R 6206292 exon Osi24 + chr3R 6206414 intron Osi24 + chr3R 6206535 intron Osi24 + chr3R_8_6205001 chr3R_6205001 RAL-776 1168 chr3R 6550322 6550352 chr3R 6550403 6550432 11 79 0.5 1.0 0.8 6.1 110 chr3R 6550322 intron dpr11 - chr3R 6550377 intron dpr11 - chr3R 6550432 intron dpr11 - chr3R_11_6550001 chr3R_6550001 RAL-776 1169 chr3R 6624265 6624282 chr3R 6624346 6624364 7 82 1.5 1.5 1.5 2.8 99 chr3R 6624265 intergenic not near genes chr3R 6624314 intergenic not near genes chr3R 6624364 intergenic not near genes chr3R_7_6620001 chr3R_6620001 RAL-776 1170 chr3R 6655772 6655795 chr3R 6656044 6656067 8 272 1.5 4.5 3.0 2.0 295 chr3R 6655772 exon Taf1 + chr3R 6655920 3` UTR Taf1 + chr3R 6656067 intergenic Taf1 +,CG1307 - chr3R_8_6655001 chr3R_6655001 RAL-776 1171 chr3R 6663620 6663632 chr3R 6663692 6663712 5 78 4.0 4.5 4.2 1.0 92 chr3R 6663620 intron lab - chr3R 6663666 intron lab - chr3R 6663712 intron lab - chr3R_5_6660001 chr3R_6660001 RAL-776 1172 chr3R 6705684 6705703 chr3R 6705908 6705927 5 224 1.0 1.0 1.0 2.5 243 chr3R 6705684 intergenic not near genes chr3R 6705806 intergenic not near genes chr3R 6705927 intergenic not near genes chr3R_5_6705001 chr3R_6705001 RAL-776 1173 chr3R 6737497 6737531 chr3R 6739284 6739318 Doc 12 1786 2.0 4.0 3.0 3.0 1821 chr3R 6737497 intron pb - chr3R 6738408 intron pb - chr3R 6739318 intron pb - chr3R_12_6735001 chr3R_6735001 RAL-776 1174 chr3R 6741007 6741031 chr3R 6741090 6741114 4 83 0.0 0.0 0.0 4.0 107 chr3R 6741007 intron pb - chr3R 6741060 intron pb - chr3R 6741114 intron pb - chr3R_4_6740001 chr3R_6740001 RAL-776 1175 chr3R 6804202 6804221 chr3R 6804310 6804330 6 105 3.5 3.0 3.2 1.4 128 chr3R 6804202 intergenic not near genes chr3R 6804266 intergenic not near genes chr3R 6804330 intergenic not near genes chr3R_6_6800001 chr3R_6800001 RAL-776 1176 chr3R 6819632 6819660 chr3R 6819716 6819744 10 83 1.5 1.5 1.5 4.0 112 chr3R 6819632 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R 6819688 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R 6819744 intergenic 7SLRNA:CR32864 -,7SLRNA:CR42652 - chr3R_10_6815001 chr3R_6815001 RAL-776 1177 chr3R 6828026 6828039 chr3R 6828102 6828115 6 76 3.0 2.5 2.8 1.6 89 chr3R 6828026 intron Scr - chr3R 6828070 intron Scr - chr3R 6828115 intron Scr - chr3R_6_6825001 chr3R_6825001 RAL-776 1178 chr3R 6891246 6891267 chr3R 6891313 6891341 5 67 2.0 1.5 1.8 1.8 95 chr3R 6891246 intergenic not near genes chr3R 6891294 intergenic not near genes chr3R 6891341 intergenic not near genes chr3R_5_6890001 chr3R_6890001 RAL-776 1179 chr3R 6940873 6940891 chr3R 6940986 6940988 9 109 2.5 3.0 2.8 2.4 115 chr3R 6940873 intron Antp - chr3R 6940930 intron Antp - chr3R 6940988 intron Antp - chr3R_9_6940001 chr3R_6940001 RAL-776 1180 chr3R 7030704 7030729 chr3R 7030780 7030803 4 69 2.5 0.0 1.2 1.8 99 chr3R 7030704 intergenic not near genes chr3R 7030754 intergenic not near genes chr3R 7030803 intergenic not near genes chr3R_4_7030001 chr3R_7030001 RAL-776 1181 chr3R 7060281 7060283 chr3R 7060362 7060364 4 81 1.0 6.5 3.8 0.8 83 chr3R 7060281 3` UTR dj + chr3R 7060322 3` UTR dj + chr3R 7060364 3` UTR dj + chr3R_4_7060001 chr3R_7060001 RAL-776 1182 chr3R 7278069 7278091 chr3R 7278189 7278217 6 123 2.5 2.5 2.5 1.7 148 chr3R 7278069 intron rn - chr3R 7278143 intron rn - chr3R 7278217 intron rn - chr3R_6_7275001 chr3R_7275001 RAL-776 1183 chr3R 7281055 7281078 chr3R 7281146 7281170 5 89 2.0 3.5 2.8 1.3 115 chr3R 7281055 intron rn - chr3R 7281112 intron rn - chr3R 7281170 intron rn - chr3R_5_7280001 chr3R_7280001 RAL-776 1184 chr3R 7396059 7396088 chr3R 7396154 7396183 7 95 2.0 2.0 2.0 2.3 124 chr3R 7396059 intergenic not near genes chr3R 7396121 intergenic not near genes chr3R 7396183 intergenic not near genes chr3R_7_7395001 chr3R_7395001 RAL-776 1185 chr3R 7428725 7428746 chr3R 7428901 7428922 5 176 1.5 2.5 2.0 1.7 197 chr3R 7428725 intergenic not near genes chr3R 7428824 intergenic not near genes chr3R 7428922 intergenic not near genes chr3R_5_7425001 chr3R_7425001 RAL-776 1186 chr3R 7437665 7437686 chr3R 7437931 7437951 10 266 1.5 3.0 2.2 3.1 286 chr3R 7437665 intergenic not near genes chr3R 7437808 intergenic not near genes chr3R 7437951 intergenic not near genes chr3R_10_7435001 chr3R_7435001 RAL-776 1187 chr3R 7447991 7448012 chr3R 7448068 7448090 10 78 4.5 2.0 3.2 2.4 99 chr3R 7447991 intergenic not near genes chr3R 7448040 intergenic not near genes chr3R 7448090 intergenic not near genes chr3R_10_7445001 chr3R_7445001 RAL-776 1188 chr3R 7461717 7461740 chr3R 7462271 7462293 4 554 1.5 5.5 3.5 0.9 576 chr3R 7461717 intergenic not near genes chr3R 7462005 intergenic not near genes chr3R 7462293 intergenic not near genes chr3R_4_7460001 chr3R_7460001 RAL-776 1189 chr3R 7461741 7461748 chr3R 7462268 7462302 10 545 1.5 4.5 3.0 2.5 561 chr3R 7461741 intergenic not near genes chr3R 7462022 intergenic not near genes chr3R 7462302 intergenic not near genes chr3R_10_7460001 chr3R_7460001 RAL-776 1190 chr3R 7507499 7507528 chr3R 7507624 7507652 5 123 2.5 3.0 2.8 1.3 153 chr3R 7507499 intergenic not near genes chr3R 7507576 intergenic not near genes chr3R 7507652 intergenic not near genes chr3R_5_7505001 chr3R_7505001 RAL-776 1191 chr3R 7566006 7566032 chr3R 7566086 7566113 6 78 6.0 3.5 4.8 1.0 107 chr3R 7566006 intergenic not near genes chr3R 7566060 intergenic not near genes chr3R 7566113 intergenic not near genes chr3R_6_7565001 chr3R_7565001 RAL-776 1192 chr3R 7578742 7578760 chr3R 7578891 7578909 4 148 1.5 2.5 2.0 1.3 167 chr3R 7578742 intron CG34127 - chr3R 7578826 intron CG34127 - chr3R 7578909 intron CG34127 - chr3R_4_7575001 chr3R_7575001 RAL-776 1193 chr3R 7621530 7621549 chr3R 7621620 7621637 5 90 1.0 2.0 1.5 2.0 107 chr3R 7621530 intron CG34127 - chr3R 7621584 intron CG34127 - chr3R 7621637 intron CG34127 - chr3R_5_7620001 chr3R_7620001 RAL-776 1194 chr3R 7677917 7677940 chr3R 7678029 7678053 5 110 1.5 4.0 2.8 1.3 136 chr3R 7677917 intron Nlg1 + chr3R 7677985 intron Nlg1 + chr3R 7678053 intron Nlg1 + chr3R_5_7675001 chr3R_7675001 RAL-776 1195 chr3R 7729477 7729495 chr3R 7737415 7737433 Stalker2 6 7938 2.0 3.0 2.5 1.7 7956 chr3R 7729477 intergenic not near genes chr3R 7733455 intergenic not near genes chr3R 7737433 intergenic not near genes chr3R_6_7730001 chr3R_7730001 RAL-776 1196 chr3R 7822156 7822193 chr3R 7822277 7822314 7 121 4.5 4.5 4.5 1.3 158 chr3R 7822156 intron CG34384 + chr3R 7822235 intron CG34384 + chr3R 7822314 intron CG34384 + chr3R_7_7820001 chr3R_7820001 RAL-776 1197 chr3R 7849652 7849677 chr3R 7850819 7850841 1360 7 1166 2.5 6.5 4.5 1.3 1189 chr3R 7849652 intron CG34384 + chr3R 7850246 intron CG34384 + chr3R 7850841 intron CG34384 + chr3R_7_7850001 chr3R_7850001 RAL-776 1198 chr3R 7857649 7857667 chr3R 7857732 7857750 4 83 2.5 7.5 5.0 0.7 101 chr3R 7857649 3` UTR CG17816 - chr3R 7857700 3` UTR CG17816 - chr3R 7857750 3` UTR CG17816 - chr3R_4_7855001 chr3R_7855001 RAL-776 1199 chr3R 7877475 7877495 chr3R 7877566 7877586 5 91 2.0 3.0 2.5 1.4 111 chr3R 7877475 intron CG17816 - chr3R 7877530 intron CG17816 - chr3R 7877586 intron CG17816 - chr3R_5_7875001 chr3R_7875001 RAL-776 1200 chr3R 8074744 8074772 chr3R 8074829 8074850 15 84 2.0 3.5 2.8 3.9 106 chr3R 8074744 intron mAChR-B + chr3R 8074797 intron mAChR-B + chr3R 8074850 intron mAChR-B + chr3R_15_8070001 chr3R_8070001 RAL-776 1201 chr3R 8090276 8090299 chr3R 8090453 8090456 11 175 4.5 1.5 3.0 2.8 180 chr3R 8090276 5` UTR CR44330 + chr3R 8090366 intergenic CR44330 + chr3R 8090456 intergenic CR44330 + chr3R_11_8090001 chr3R_8090001 RAL-776 1202 chr3R 8094409 8094431 chr3R 8099714 8099735 Transpac 5 5305 3.0 6.0 4.5 0.9 5326 chr3R 8094409 intron CG7900 + chr3R 8097072 intron CG7900 + chr3R 8099735 intron CG7900 + chr3R_5_8095001 chr3R_8095001 RAL-776 1203 chr3R 8101772 8101778 chr3R 8104856 8104862 G2 4 3084 3.0 1.5 2.2 1.2 3090 chr3R 8101772 exon CG7900 + chr3R 8103317 intron CG7900 + chr3R 8104862 3` UTR CG7900 + chr3R_4_8100001 chr3R_8100001 RAL-776 1204 chr3R 8182651 8182687 chr3R 8182745 8182781 10 91 1.0 3.0 2.0 3.3 130 chr3R 8182651 intergenic not near genes chr3R 8182716 intergenic not near genes chr3R 8182781 intergenic not near genes chr3R_10_8180001 chr3R_8180001 RAL-776 1205 chr3R 8183497 8183532 chr3R 8183585 8183620 14 88 2.0 4.0 3.0 3.5 123 chr3R 8183497 intergenic not near genes chr3R 8183558 intergenic not near genes chr3R 8183620 intergenic not near genes chr3R_14_8180001 chr3R_8180001 RAL-776 1206 chr3R 8273748 8273769 chr3R 8273834 8273855 9 86 2.0 4.0 3.0 2.2 107 chr3R 8273748 intergenic not near genes chr3R 8273802 intergenic not near genes chr3R 8273855 intergenic not near genes chr3R_9_8270001 chr3R_8270001 RAL-776 1207 chr3R 8276779 8276812 chr3R 8276861 8276894 13 80 5.5 5.5 5.5 2.0 115 chr3R 8276779 intergenic not near genes chr3R 8276836 intergenic not near genes chr3R 8276894 intergenic not near genes chr3R_13_8275001 chr3R_8275001 RAL-776 1208 chr3R 8326544 8326563 chr3R 8326642 8326651 5 91 6.5 3.5 5.0 0.8 107 chr3R 8326544 intron Poxm - chr3R 8326598 intron Poxm - chr3R 8326651 intron Poxm - chr3R_5_8325001 chr3R_8325001 RAL-776 1209 chr3R 8326569 8326575 chr3R 8326641 8326655 5 83 5.0 3.5 4.2 1.0 86 chr3R 8326569 intron Poxm - chr3R 8326612 intron Poxm - chr3R 8326655 intron Poxm - chr3R_5_8325001 chr3R_8325001 RAL-776 1210 chr3R 8334311 8334334 chr3R 8334460 8334483 6 149 3.5 1.5 2.5 1.7 172 chr3R 8334311 intergenic not near genes chr3R 8334397 intergenic not near genes chr3R 8334483 intergenic not near genes chr3R_6_8330001 chr3R_8330001 RAL-776 1211 chr3R 8339246 8339247 chr3R 21907534 21907536 11 13568288 14.0 18.5 16.2 0.6 13568290 chr3R 8339246 intergenic not near genes chr3R 15123391 intron CG42788 - chr3R 21907536 intergenic CG6678 + chr3R_11_15120001 chr3R_15120001 RAL-776 1212 chr3R 8363173 8363208 chr3R 8365075 8365110 11 1900 2.5 4.0 3.2 2.6 1937 chr3R 8363173 exon CG7963 + chr3R 8364142 intergenic CG45263 -,CG7963 + chr3R 8365110 exon CG45263 - chr3R_11_8360001 chr3R_8360001 RAL-776 1213 chr3R 8390899 8390910 chr3R 8390979 8390995 7 84 5.0 2.0 3.5 1.6 96 chr3R 8390899 intron CG45263 - chr3R 8390947 intron CG45263 - chr3R 8390995 intron CG45263 - chr3R_7_8390001 chr3R_8390001 RAL-776 1214 chr3R 8393587 8393605 chr3R 8393671 8393689 4 84 2.5 3.0 2.8 1.1 102 chr3R 8393587 intron CG45263 - chr3R 8393638 intron CG45263 - chr3R 8393689 intron CG45263 - chr3R_4_8390001 chr3R_8390001 RAL-776 1215 chr3R 8403009 8403037 chr3R 8412175 8412178 roo 11 9163 5.0 3.5 4.2 2.1 9169 chr3R 8403009 intron CG45263 - chr3R 8407594 intron CG45263 - chr3R 8412178 intron CG45263 - chr3R_11_8405001 chr3R_8405001 RAL-776 1216 chr3R 8424761 8424792 chr3R 8424845 8424874 14 83 1.0 4.5 2.8 3.7 113 chr3R 8424761 intron CG45263 - chr3R 8424818 intron CG45263 - chr3R 8424874 intron CG45263 - chr3R_14_8420001 chr3R_8420001 RAL-776 1217 chr3R 8439510 8439538 chr3R 8439585 8439596 4 69 3.5 3.5 3.5 0.9 86 chr3R 8439510 intron CG45263 - chr3R 8439553 intron CG45263 - chr3R 8439596 intron CG45263 - chr3R_4_8435001 chr3R_8435001 RAL-776 1218 chr3R 8449819 8449851 chr3R 8449899 8449918 12 76 3.0 1.5 2.2 3.8 99 chr3R 8449819 intron CG45263 - chr3R 8449868 intron CG45263 - chr3R 8449918 intron CG45263 - chr3R_12_8445001 chr3R_8445001 RAL-776 1219 chr3R 8470793 8470817 chr3R 8470879 8470905 11 88 1.0 1.5 1.2 5.0 112 chr3R 8470793 intron CG45263 - chr3R 8470849 intron CG45263 - chr3R 8470905 intron CG45263 - chr3R_11_8470001 chr3R_8470001 RAL-776 1220 chr3R 8485337 8485364 chr3R 8485417 8485444 10 80 2.0 3.0 2.5 2.9 107 chr3R 8485337 intergenic not near genes chr3R 8485390 intergenic not near genes chr3R 8485444 intergenic not near genes chr3R_10_8485001 chr3R_8485001 RAL-776 1221 chr3R 8570485 8570511 chr3R 8575121 8575142 HMS-Beagle 12 4635 2.5 3.5 3.0 3.0 4657 chr3R 8570485 intergenic not near genes chr3R 8572814 intergenic not near genes chr3R 8575142 intergenic not near genes chr3R_12_8570001 chr3R_8570001 RAL-776 1222 chr3R 8590075 8590095 chr3R 8590377 8590397 10 302 0.0 4.5 2.2 3.1 322 chr3R 8590075 intron 5-HT2B + chr3R 8590236 intron 5-HT2B + chr3R 8590397 intron 5-HT2B + chr3R_10_8590001 chr3R_8590001 RAL-776 1223 chr3R 8601776 8601799 chr3R 8610918 8610952 roo 9 9150 4.5 3.0 3.8 1.9 9176 chr3R 8601776 intron 5-HT2B + chr3R 8606364 intron 5-HT2B + chr3R 8610952 intron 5-HT2B + chr3R_9_8605001 chr3R_8605001 RAL-776 1224 chr3R 8630910 8630935 chr3R 8631016 8631041 6 103 1.0 3.5 2.2 1.9 131 chr3R 8630910 intergenic not near genes chr3R 8630976 intergenic not near genes chr3R 8631041 intergenic not near genes chr3R_6_8630001 chr3R_8630001 RAL-776 1225 chr3R 8671408 8671437 chr3R 8671492 8671521 11 84 1.5 4.0 2.8 2.9 113 chr3R 8671408 intron CG8036 + chr3R 8671464 intron CG8036 + chr3R 8671521 intron CG8036 + chr3R_11_8670001 chr3R_8670001 RAL-776 1226 chr3R 8707355 8707385 chr3R 8709796 8709826 jockey 13 2441 2.5 7.0 4.8 2.2 2471 chr3R 8707355 intergenic not near genes chr3R 8708590 intergenic not near genes chr3R 8709826 intergenic not near genes chr3R_13_8705001 chr3R_8705001 RAL-776 1227 chr3R 8743184 8743218 chr3R 8743266 8743300 23 81 6.0 2.5 4.2 4.4 116 chr3R 8743184 intron CG9801 - chr3R 8743242 intron CG9801 - chr3R 8743300 intron CG9801 - chr3R_23_8740001 chr3R_8740001 RAL-776 1228 chr3R 8745747 8745775 chr3R 8745858 8745886 6 111 0.0 1.0 0.5 4.0 139 chr3R 8745747 intron CG9801 - chr3R 8745816 intron CG9801 - chr3R 8745886 intron CG9801 - chr3R_6_8745001 chr3R_8745001 RAL-776 1229 chr3R 8855645 8855674 chr3R 8855725 8855754 4 80 1.0 0.5 0.8 2.2 109 chr3R 8855645 intron pyd - chr3R 8855700 intron pyd - chr3R 8855754 intron pyd - chr3R_4_8855001 chr3R_8855001 RAL-776 1230 chr3R 8894874 8894898 chr3R 8896030 8896054 1360 5 1156 2.5 1.5 2.0 1.7 1180 chr3R 8894874 intron pyd - chr3R 8895464 intron pyd - chr3R 8896054 intron pyd - chr3R_5_8895001 chr3R_8895001 RAL-776 1231 chr3R 9069496 9069519 chr3R 9069571 9069598 5 78 1.0 5.5 3.2 1.2 102 chr3R 9069496 3` UTR pum - chr3R 9069547 3` UTR pum - chr3R 9069598 3` UTR pum - chr3R_5_9065001 chr3R_9065001 RAL-776 1232 chr3R 9083141 9083174 chr3R 9083226 9083259 12 85 0.5 4.0 2.2 3.8 118 chr3R 9083141 intron pum - chr3R 9083200 intron pum - chr3R 9083259 intron pum - chr3R_12_9080001 chr3R_9080001 RAL-776 1233 chr3R 9095288 9095309 chr3R 9095375 9095396 4 87 2.0 2.5 2.2 1.2 108 chr3R 9095288 intron pum - chr3R 9095342 intron pum - chr3R 9095396 intron pum - chr3R_4_9095001 chr3R_9095001 RAL-776 1234 chr3R 9117520 9117534 chr3R 9117609 9117622 5 88 6.5 2.0 4.2 1.0 102 chr3R 9117520 intron pum - chr3R 9117571 intron pum - chr3R 9117622 intron pum - chr3R_5_9115001 chr3R_9115001 RAL-776 1235 chr3R 9141142 9141172 chr3R 9141226 9141255 12 84 2.0 2.5 2.2 3.8 113 chr3R 9141142 intron pum - chr3R 9141198 intron pum - chr3R 9141255 intron pum - chr3R_12_9140001 chr3R_9140001 RAL-776 1236 chr3R 9142792 9142816 chr3R 9142951 9142964 7 157 2.5 2.0 2.2 2.2 172 chr3R 9142792 intron pum - chr3R 9142878 intron pum - chr3R 9142964 intron pum - chr3R_7_9140001 chr3R_9140001 RAL-776 1237 chr3R 9227248 9227268 chr3R 9227323 9227334 5 75 3.5 6.0 4.8 0.9 86 chr3R 9227248 intron pum - chr3R 9227291 intron pum - chr3R 9227334 intron pum - chr3R_5_9225001 chr3R_9225001 RAL-776 1238 chr3R 9278779 9278808 chr3R 9284039 9284057 Rt1a 7 5258 1.5 5.0 3.2 1.7 5278 chr3R 9278779 intergenic not near genes chr3R 9281418 intergenic not near genes chr3R 9284057 intergenic not near genes chr3R_7_9280001 chr3R_9280001 RAL-776 1239 chr3R 9284343 9284375 chr3R 9284440 9284469 7 96 2.0 3.5 2.8 1.8 126 chr3R 9284343 intergenic not near genes chr3R 9284406 intergenic not near genes chr3R 9284469 intergenic not near genes chr3R_7_9280001 chr3R_9280001 RAL-776 1240 chr3R 9488018 9488046 chr3R 9488144 9488174 6 128 3.5 1.0 2.2 1.9 156 chr3R 9488018 intron CG16779 - chr3R 9488096 intron CG16779 - chr3R 9488174 intron CG16779 - chr3R_6_9485001 chr3R_9485001 RAL-776 1241 chr3R 9582283 9582313 chr3R 9582566 9582596 4 283 2.0 2.0 2.0 1.3 313 chr3R 9582283 intron CG8301 + chr3R 9582440 intron CG8301 + chr3R 9582596 intron,exon CG8301 +,CG33654 - chr3R_4_9580001 chr3R_9580001 RAL-776 1242 chr3R 9611878 9611906 chr3R 9611960 9611988 4 78 0.5 0.0 0.2 3.3 110 chr3R 9611878 intron CG8312 + chr3R 9611933 intron CG8312 + chr3R 9611988 intron CG8312 + chr3R_4_9610001 chr3R_9610001 RAL-776 1243 chr3R 9699972 9700003 chr3R 9700061 9700092 1360 7 89 5.5 2.5 4.0 1.4 120 chr3R 9699972 intron Unc-115a - chr3R 9700032 intron Unc-115a - chr3R 9700092 intron Unc-115a - chr3R_7_9700001 chr3R_9700001 RAL-776 1244 chr3R 9823888 9823913 chr3R 9823965 9823990 6 77 3.0 2.5 2.8 1.6 102 chr3R 9823888 intergenic CG34302 -,CR42858 - chr3R 9823939 intergenic CG34302 -,CR42858 - chr3R 9823990 intergenic CG34302 -,CR42858 - chr3R_6_9820001 chr3R_9820001 RAL-776 1245 chr3R 9829405 9829424 chr3R 9829490 9829509 4 85 3.0 0.5 1.8 1.4 104 chr3R 9829405 intron Teh1 - chr3R 9829457 intron Teh1 - chr3R 9829509 intron Teh1 - chr3R_4_9825001 chr3R_9825001 RAL-776 1246 chr3R 9836882 9836901 chr3R 9836961 9836989 10 87 5.0 7.5 6.2 1.4 107 chr3R 9836882 intron Teh1 - chr3R 9836936 intron Teh1 - chr3R 9836989 intron Teh1 - chr3R_10_9835001 chr3R_9835001 RAL-776 1247 chr3R 9942318 9942329 chr3R 9942397 9942398 6 76 10.5 1.5 6.0 0.9 80 chr3R 9942318 intron Glut4EF + chr3R 9942358 intron Glut4EF + chr3R 9942398 intron Glut4EF + chr3R_6_9940001 chr3R_9940001 RAL-776 1248 chr3R 9967334 9967351 chr3R 9967414 9967431 5 78 5.5 6.0 5.8 0.7 97 chr3R 9967334 intron Glut4EF + chr3R 9967382 intron Glut4EF + chr3R 9967431 intron Glut4EF + chr3R_5_9965001 chr3R_9965001 RAL-776 1249 chr3R 10079886 10079906 chr3R 10079981 10079998 5 93 0.5 1.0 0.8 2.8 112 chr3R 10079886 intergenic not near genes chr3R 10079942 intergenic not near genes chr3R 10079998 intergenic not near genes chr3R_5_10075001 chr3R_10075001 RAL-776 1250 chr3R 10444187 10444204 chr3R 10444326 10444343 5 139 2.0 5.0 3.5 1.1 156 chr3R 10444187 intergenic not near genes chr3R 10444265 intergenic not near genes chr3R 10444343 intergenic not near genes chr3R_5_10440001 chr3R_10440001 RAL-776 1251 chr3R 10514342 10514370 chr3R 10514425 10514453 12 82 3.0 3.0 3.0 3.0 111 chr3R 10514342 exon hth - chr3R 10514398 intron hth - chr3R 10514453 intron hth - chr3R_12_10510001 chr3R_10510001 RAL-776 1252 chr3R 10531872 10531900 chr3R 10531946 10531978 11 79 2.0 3.5 2.8 2.9 106 chr3R 10531872 intron hth - chr3R 10531925 intron hth - chr3R 10531978 intron hth - chr3R_11_10530001 chr3R_10530001 RAL-776 1253 chr3R 10593452 10593461 chr3R 10593515 10593545 5 75 2.5 5.0 3.8 1.0 93 chr3R 10593452 intron hth - chr3R 10593498 intron hth - chr3R 10593545 intron hth - chr3R_5_10590001 chr3R_10590001 RAL-776 1254 chr3R 10720631 10720653 chr3R 10720708 10720736 8 81 7.5 2.5 5.0 1.3 105 chr3R 10720631 intergenic not near genes chr3R 10720684 intergenic not near genes chr3R 10720736 intergenic not near genes chr3R_8_10720001 chr3R_10720001 RAL-776 1255 chr3R 10752628 10752651 chr3R 10752714 10752737 4 86 3.5 2.5 3.0 1.0 109 chr3R 10752628 intergenic not near genes chr3R 10752682 intergenic not near genes chr3R 10752737 intergenic not near genes chr3R_4_10750001 chr3R_10750001 RAL-776 1256 chr3R 10785815 10785840 chr3R 10785894 10785919 6 79 2.0 2.0 2.0 2.0 104 chr3R 10785815 intron Rbp1 + chr3R 10785867 intron Rbp1 + chr3R 10785919 intron Rbp1 + chr3R_6_10785001 chr3R_10785001 RAL-776 1257 chr3R 10804183 10804205 chr3R 10811710 10811737 17.6 6 7531 2.0 0.5 1.2 2.7 7554 chr3R 10804183 intergenic CG14692 - chr3R 10807960 intergenic not near genes chr3R 10811737 3` UTR CG14693 - chr3R_6_10805001 chr3R_10805001 RAL-776 1258 chr3R 10910997 10911028 chr3R 10911117 10911148 9 119 1.5 5.0 3.2 2.1 151 chr3R 10910997 intergenic not near genes chr3R 10911072 intergenic not near genes chr3R 10911148 intergenic not near genes chr3R_9_10910001 chr3R_10910001 RAL-776 1259 chr3R 10920056 10920073 chr3R 10920120 10920140 8 75 1.0 0.5 0.8 4.4 84 chr3R 10920056 intergenic not near genes chr3R 10920098 intergenic not near genes chr3R 10920140 intergenic not near genes chr3R_8_10920001 chr3R_10920001 RAL-776 1260 chr3R 10931357 10931391 chr3R 10931434 10931468 11 75 6.0 3.0 4.5 2.0 111 chr3R 10931357 intergenic not near genes chr3R 10931412 intergenic not near genes chr3R 10931468 intergenic not near genes chr3R_11_10930001 chr3R_10930001 RAL-776 1261 chr3R 10935746 10935776 chr3R 10935828 10935858 8 82 2.5 1.5 2.0 2.7 112 chr3R 10935746 intergenic not near genes chr3R 10935802 intergenic not near genes chr3R 10935858 intergenic not near genes chr3R_8_10935001 chr3R_10935001 RAL-776 1262 chr3R 10942226 10942249 chr3R 10942308 10942331 6 82 1.5 2.0 1.8 2.1 105 chr3R 10942226 intergenic not near genes chr3R 10942278 intergenic not near genes chr3R 10942331 intergenic not near genes chr3R_6_10940001 chr3R_10940001 RAL-776 1263 chr3R 11016962 11016970 chr3R 11017047 11017061 4 90 1.5 1.0 1.2 1.8 99 chr3R 11016962 intron CG34114 + chr3R 11017012 intron CG34114 + chr3R 11017061 intron CG34114 + chr3R_4_11015001 chr3R_11015001 RAL-776 1264 chr3R 11142513 11142525 chr3R 11142628 11142640 4 115 3.0 1.0 2.0 1.3 127 chr3R 11142513 intergenic not near genes chr3R 11142576 intergenic not near genes chr3R 11142640 intergenic not near genes chr3R_4_11140001 chr3R_11140001 RAL-776 1265 chr3R 11263396 11263425 chr3R 11263480 11263509 8 83 2.5 1.5 2.0 2.7 113 chr3R 11263396 intergenic not near genes chr3R 11263452 intergenic not near genes chr3R 11263509 intergenic not near genes chr3R_8_11260001 chr3R_11260001 RAL-776 1266 chr3R 11379244 11379255 chr3R 11388394 11388406 roo 5 9153 3.5 2.0 2.8 1.3 9162 chr3R 11379244 intron pros + chr3R 11383825 intron pros + chr3R 11388406 intron pros + chr3R_5_11380001 chr3R_11380001 RAL-776 1267 chr3R 11406291 11406315 chr3R 11406368 11406392 5 77 0.5 2.0 1.2 2.3 101 chr3R 11406291 3` UTR pros + chr3R 11406342 3` UTR pros + chr3R 11406392 3` UTR pros + chr3R_5_11405001 chr3R_11405001 RAL-776 1268 chr3R 11408757 11408786 chr3R 11408850 11408877 9 93 4.0 4.5 4.2 1.7 120 chr3R 11408757 intergenic mRpL40 +,mgr - chr3R 11408817 3` UTR mgr - chr3R 11408877 3` UTR mgr - chr3R_9_11405001 chr3R_11405001 RAL-776 1269 chr3R 11422519 11422552 chr3R 11422623 11422656 4 104 3.5 5.0 4.2 0.8 137 chr3R 11422519 intron CG5270 + chr3R 11422588 exon CG5270 + chr3R 11422656 exon CG5270 + chr3R_4_11420001 chr3R_11420001 RAL-776 1270 chr3R 11461268 11461300 chr3R 11461347 11461380 15 77 4.5 3.0 3.8 3.1 112 chr3R 11461268 intron CG17230 + chr3R 11461324 intron CG17230 + chr3R 11461380 intron CG17230 + chr3R_15_11460001 chr3R_11460001 RAL-776 1271 chr3R 11476956 11476970 chr3R 11477058 11477072 7 102 1.5 5.0 3.2 1.7 116 chr3R 11476956 intergenic not near genes chr3R 11477014 intergenic not near genes chr3R 11477072 intergenic not near genes chr3R_7_11475001 chr3R_11475001 RAL-776 1272 chr3R 11483456 11483485 chr3R 11483533 11483562 8 75 3.5 3.0 3.2 1.9 106 chr3R 11483456 intergenic not near genes chr3R 11483509 intergenic not near genes chr3R 11483562 intergenic not near genes chr3R_8_11480001 chr3R_11480001 RAL-776 1273 chr3R 11518818 11518836 chr3R 11518909 11518927 5 88 4.0 5.0 4.5 0.9 109 chr3R 11518818 intergenic not near genes chr3R 11518872 intergenic not near genes chr3R 11518927 intergenic not near genes chr3R_5_11515001 chr3R_11515001 RAL-776 1274 chr3R 11571822 11571848 chr3R 11571916 11571943 9 95 2.5 2.5 2.5 2.6 121 chr3R 11571822 intron Mrp4 + chr3R 11571882 intron Mrp4 + chr3R 11571943 intron Mrp4 + chr3R_9_11570001 chr3R_11570001 RAL-776 1275 chr3R 11583591 11583613 chr3R 11583668 11583690 8 77 2.5 5.5 4.0 1.6 99 chr3R 11583591 intron wkd + chr3R 11583640 intron wkd + chr3R 11583690 intron wkd + chr3R_8_11580001 chr3R_11580001 RAL-776 1276 chr3R 11708631 11708647 chr3R 11708839 11708855 6 208 5.0 1.5 3.2 1.4 224 chr3R 11708631 intergenic not near genes chr3R 11708743 intergenic not near genes chr3R 11708855 intergenic not near genes chr3R_6_11705001 chr3R_11705001 RAL-776 1277 chr3R 11710208 11710238 chr3R 11710282 11710316 13 77 1.0 3.0 2.0 4.3 108 chr3R 11710208 intergenic not near genes chr3R 11710262 intergenic not near genes chr3R 11710316 intergenic not near genes chr3R_13_11710001 chr3R_11710001 RAL-776 1278 chr3R 11712676 11712690 chr3R 11712792 11712806 6 116 4.5 8.0 6.2 0.8 130 chr3R 11712676 intergenic CG14720 + chr3R 11712741 intergenic CG14720 + chr3R 11712806 intergenic CG14720 + chr3R_6_11710001 chr3R_11710001 RAL-776 1279 chr3R 11733964 11733992 chr3R 11734160 11734188 9 195 3.0 5.5 4.2 1.7 224 chr3R 11733964 intergenic not near genes chr3R 11734076 intergenic not near genes chr3R 11734188 intergenic not near genes chr3R_9_11730001 chr3R_11730001 RAL-776 1280 chr3R 11808088 11808101 chr3R 11808167 11808179 4 79 0.0 1.0 0.5 2.7 91 chr3R 11808088 intron ClC-a - chr3R 11808134 intron ClC-a - chr3R 11808179 intron ClC-a - chr3R_4_11805001 chr3R_11805001 RAL-776 1281 chr3R 11821008 11821030 chr3R 11821166 11821188 6 156 4.0 2.5 3.2 1.4 180 chr3R 11821008 exon CG6950 - chr3R 11821098 exon CG6950 - chr3R 11821188 exon CG6950 - chr3R_6_11820001 chr3R_11820001 RAL-776 1282 chr3R 11841059 11841098 chr3R 11846250 11846287 BS 9 5186 1.5 4.0 2.8 2.4 5228 chr3R 11841059 intron CG6959 - chr3R 11843673 intron CG6959 - chr3R 11846287 intron CG6959 - chr3R_9_11840001 chr3R_11840001 RAL-776 1283 chr3R 11850325 11850347 chr3R 11850398 11850426 11 76 2.0 1.0 1.5 4.4 101 chr3R 11850325 intron CG6959 - chr3R 11850376 intron CG6959 - chr3R 11850426 intron CG6959 - chr3R_11_11850001 chr3R_11850001 RAL-776 1284 chr3R 11874145 11874169 chr3R 11874265 11874289 6 120 1.5 1.5 1.5 2.4 144 chr3R 11874145 intergenic not near genes chr3R 11874217 intergenic not near genes chr3R 11874289 intergenic not near genes chr3R_6_11870001 chr3R_11870001 RAL-776 1285 chr3R 11914374 11914404 chr3R 11914459 11914489 11 85 1.5 4.0 2.8 2.9 115 chr3R 11914374 intron Cad87A - chr3R 11914432 intron Cad87A - chr3R 11914489 intron Cad87A - chr3R_11_11910001 chr3R_11910001 RAL-776 1286 chr3R 11919310 11919338 chr3R 11919398 11919423 9 83 4.0 4.0 4.0 1.8 113 chr3R 11919310 intron Cad87A - chr3R 11919366 intron Cad87A - chr3R 11919423 intron Cad87A - chr3R_9_11915001 chr3R_11915001 RAL-776 1287 chr3R 12022884 12022912 chr3R 12025061 12025089 pogo 6 2177 3.5 3.5 3.5 1.3 2205 chr3R 12022884 intergenic not near genes chr3R 12023986 intergenic not near genes chr3R 12025089 intergenic not near genes chr3R_6_12020001 chr3R_12020001 RAL-776 1288 chr3R 12029926 12029958 chr3R 12030013 12030045 9 86 3.0 2.0 2.5 2.6 119 chr3R 12029926 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12029986 3` UTR,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R 12030045 exon,5` UTR,5` UTR CG31358 -,CG42504 -,CG42505 - chr3R_9_12025001 chr3R_12025001 RAL-776 1289 chr3R 12059397 12059423 chr3R 12060880 12060906 5 1483 2.0 3.0 2.5 1.4 1509 chr3R 12059397 intergenic not near genes chr3R 12060152 intergenic not near genes chr3R 12060906 intergenic CG14740 - chr3R_5_12060001 chr3R_12060001 RAL-776 1290 chr3R 12101499 12101532 chr3R 12101576 12101609 7 76 1.5 4.0 2.8 1.8 110 chr3R 12101499 intron dpr17 + chr3R 12101554 intron dpr17 + chr3R 12101609 intron dpr17 + chr3R_7_12100001 chr3R_12100001 RAL-776 1291 chr3R 12119874 12119904 chr3R 12119973 12119988 5 88 4.5 4.5 4.5 0.9 114 chr3R 12119874 intergenic not near genes chr3R 12119931 intergenic not near genes chr3R 12119988 intergenic not near genes chr3R_5_12115001 chr3R_12115001 RAL-776 1292 chr3R 12219897 12219910 chr3R 12219973 12219987 4 77 0.5 3.0 1.8 1.4 90 chr3R 12219897 3` UTR CG4860 - chr3R 12219942 3` UTR CG4860 - chr3R 12219987 3` UTR CG4860 - chr3R_4_12215001 chr3R_12215001 RAL-776 1293 chr3R 12265729 12265741 chr3R 12265792 12265818 8 72 0.5 2.5 1.5 3.2 89 chr3R 12265729 intron svp + chr3R 12265774 intron svp + chr3R 12265818 intron svp + chr3R_8_12265001 chr3R_12265001 RAL-776 1294 chr3R 12267854 12267887 chr3R 12267934 12267965 4 80 1.0 1.5 1.2 1.8 111 chr3R 12267854 intron svp + chr3R 12267910 intron svp + chr3R 12267965 intron svp + chr3R_4_12265001 chr3R_12265001 RAL-776 1295 chr3R 12311578 12311583 chr3R 12311664 12311669 4 86 1.0 5.0 3.0 1.0 91 chr3R 12311578 exon CG4066 + chr3R 12311624 exon CG4066 + chr3R 12311669 exon CG4066 + chr3R_4_12310001 chr3R_12310001 RAL-776 1296 chr3R 12333802 12333834 chr3R 12333898 12333928 20 95 1.5 5.0 3.2 4.8 126 chr3R 12333802 intergenic not near genes chr3R 12333865 intergenic not near genes chr3R 12333928 intergenic not near genes chr3R_20_12330001 chr3R_12330001 RAL-776 1297 chr3R 12376397 12376419 chr3R 12376483 12376504 7 86 1.0 1.5 1.2 3.2 107 chr3R 12376397 exon GstD5 + chr3R 12376450 3` UTR GstD5 + chr3R 12376504 3` UTR GstD5 + chr3R_7_12375001 chr3R_12375001 RAL-776 1298 chr3R 12441064 12441101 chr3R 12441145 12441182 13 79 4.0 4.0 4.0 2.6 118 chr3R 12441064 intron Desat1 + chr3R 12441123 intron Desat1 + chr3R 12441182 intron Desat1 + chr3R_13_12440001 chr3R_12440001 RAL-776 1299 chr3R 12445219 12445252 chr3R 12445300 12445332 8 81 2.5 3.0 2.8 2.1 113 chr3R 12445219 intron Desat1 + chr3R 12445276 intron Desat1 + chr3R 12445332 intron Desat1 + chr3R_8_12445001 chr3R_12445001 RAL-776 1300 chr3R 12516067 12516088 chr3R 12516160 12516183 4 94 1.0 2.0 1.5 1.6 116 chr3R 12516067 intron Octbeta3R - chr3R 12516125 intron Octbeta3R - chr3R 12516183 intron Octbeta3R - chr3R_4_12515001 chr3R_12515001 RAL-776 1301 chr3R 12539582 12539604 chr3R 12539681 12539706 9 101 1.5 5.0 3.2 2.1 124 chr3R 12539582 intron Octbeta3R - chr3R 12539644 intron Octbeta3R - chr3R 12539706 intron Octbeta3R - chr3R_9_12535001 chr3R_12535001 RAL-776 1302 chr3R 12568435 12568471 chr3R 12568511 12568546 15 75 2.5 2.0 2.2 4.7 111 chr3R 12568435 intron Octbeta2R - chr3R 12568490 intron Octbeta2R - chr3R 12568546 intron Octbeta2R - chr3R_15_12565001 chr3R_12565001 RAL-776 1303 chr3R 12570452 12570471 chr3R 12570951 12570968 8 498 5.5 7.0 6.2 1.1 516 chr3R 12570452 intron Octbeta2R - chr3R 12570710 intron Octbeta2R - chr3R 12570968 intron Octbeta2R - chr3R_8_12570001 chr3R_12570001 RAL-776 1304 chr3R 12574687 12574700 chr3R 12575364 12575377 6 678 8.5 10.5 9.5 0.6 690 chr3R 12574687 intron Octbeta2R - chr3R 12575032 intron Octbeta2R - chr3R 12575377 intron Octbeta2R - chr3R_6_12575001 chr3R_12575001 RAL-776 1305 chr3R 12606696 12606721 chr3R 12606781 12606806 9 81 4.5 4.0 4.2 1.7 110 chr3R 12606696 intergenic not near genes chr3R 12606751 intergenic not near genes chr3R 12606806 intergenic not near genes chr3R_9_12605001 chr3R_12605001 RAL-776 1306 chr3R 12619130 12619155 chr3R 12619209 12619233 9 77 3.0 4.0 3.5 2.0 103 chr3R 12619130 intron CR44942 - chr3R 12619182 intron CR44942 - chr3R 12619233 intron CR44942 - chr3R_9_12615001 chr3R_12615001 RAL-776 1307 chr3R 12669554 12669577 chr3R 12669634 12669663 11 84 1.5 2.5 2.0 3.7 109 chr3R 12669554 intron CG14395 + chr3R 12669608 intron CG14395 + chr3R 12669663 intron CG14395 + chr3R_11_12665001 chr3R_12665001 RAL-776 1308 chr3R 12725965 12725971 chr3R 12726049 12726076 5 96 4.0 2.0 3.0 1.2 111 chr3R 12725965 intergenic not near genes chr3R 12726020 intergenic not near genes chr3R 12726076 intergenic not near genes chr3R_5_12725001 chr3R_12725001 RAL-776 1309 chr3R 12748965 12748982 chr3R 12749058 12749075 5 93 2.0 3.0 2.5 1.4 110 chr3R 12748965 intron beat-Vc - chr3R 12749020 intron beat-Vc - chr3R 12749075 intron beat-Vc - chr3R_5_12745001 chr3R_12745001 RAL-776 1310 chr3R 12763144 12763154 chr3R 12763221 12763231 4 77 0.0 1.0 0.5 2.7 87 chr3R 12763144 intron beat-Vc - chr3R 12763188 intron beat-Vc - chr3R 12763231 intron beat-Vc - chr3R_4_12760001 chr3R_12760001 RAL-776 1311 chr3R 12765407 12765419 chr3R 12765504 12765516 6 97 1.5 1.5 1.5 2.4 109 chr3R 12765407 intron beat-Vc - chr3R 12765462 intron beat-Vc - chr3R 12765516 intron beat-Vc - chr3R_6_12765001 chr3R_12765001 RAL-776 1312 chr3R 12780277 12780302 chr3R 12780390 12780415 BS 5 113 3.0 0.0 1.5 2.0 138 chr3R 12780277 intron beat-Vc - chr3R 12780346 intron beat-Vc - chr3R 12780415 intron beat-Vc - chr3R_5_12780001 chr3R_12780001 RAL-776 1313 chr3R 12810018 12810042 chr3R 12810089 12810119 6 75 5.0 5.5 5.2 1.0 101 chr3R 12810018 intergenic not near genes chr3R 12810068 intergenic not near genes chr3R 12810119 intergenic not near genes chr3R_6_12810001 chr3R_12810001 RAL-776 1314 chr3R 12819026 12819044 chr3R 12819109 12819126 7 83 3.0 3.5 3.2 1.7 100 chr3R 12819026 intergenic not near genes chr3R 12819076 intergenic not near genes chr3R 12819126 intergenic not near genes chr3R_7_12815001 chr3R_12815001 RAL-776 1315 chr3R 12833163 12833183 chr3R 12833518 12833550 4 361 0.0 2.0 1.0 2.0 387 chr3R 12833163 intergenic not near genes chr3R 12833356 intergenic not near genes chr3R 12833550 intergenic not near genes chr3R_4_12830001 chr3R_12830001 RAL-776 1316 chr3R 12858744 12858768 chr3R 12858823 12858849 4 80 4.5 3.0 3.8 0.8 105 chr3R 12858744 intron CG10126 - chr3R 12858796 intron CG10126 - chr3R 12858849 intron CG10126 - chr3R_4_12855001 chr3R_12855001 RAL-776 1317 chr3R 12920153 12920177 chr3R 12925356 12925379 copia 7 5203 2.5 3.0 2.8 1.8 5226 chr3R 12920153 intron beat-Vb + chr3R 12922766 intron beat-Vb + chr3R 12925379 intron beat-Vb + chr3R_7_12920001 chr3R_12920001 RAL-776 1318 chr3R 12943984 12944008 chr3R 12944071 12944095 8 87 1.5 1.5 1.5 3.2 111 chr3R 12943984 intergenic not near genes chr3R 12944040 intergenic not near genes chr3R 12944095 intergenic not near genes chr3R_8_12940001 chr3R_12940001 RAL-776 1319 chr3R 12947539 12947565 chr3R 12947617 12947640 6 78 3.0 6.5 4.8 1.0 101 chr3R 12947539 intergenic not near genes chr3R 12947590 intergenic not near genes chr3R 12947640 intergenic not near genes chr3R_6_12945001 chr3R_12945001 RAL-776 1320 chr3R 12972562 12972582 chr3R 12972701 12972721 6 139 2.0 2.5 2.2 1.9 159 chr3R 12972562 intron CG7381 - chr3R 12972642 intron CG7381 - chr3R 12972721 intron CG7381 - chr3R_6_12970001 chr3R_12970001 RAL-776 1321 chr3R 13013212 13013242 chr3R 13013294 13013322 11 79 1.5 1.0 1.2 5.0 110 chr3R 13013212 intron CtBP + chr3R 13013267 intron CtBP + chr3R 13013322 intron CtBP + chr3R_11_13010001 chr3R_13010001 RAL-776 1322 chr3R 13015747 13015776 chr3R 13015834 13015848 10 83 2.5 3.5 3.0 2.5 101 chr3R 13015747 intron CtBP + chr3R 13015798 intron CtBP + chr3R 13015848 intron CtBP + chr3R_10_13015001 chr3R_13015001 RAL-776 1323 chr3R 13042983 13043000 chr3R 13043214 13043234 11 233 6.5 1.0 3.8 2.3 251 chr3R 13042983 exon CG11670 + chr3R 13043108 intron CG11670 + chr3R 13043234 intron CG11670 + chr3R_11_13040001 chr3R_13040001 RAL-776 1324 chr3R 13120772 13120800 chr3R 13120849 13120876 11 75 2.0 5.0 3.5 2.4 104 chr3R 13120772 intron timeout + chr3R 13120824 intron timeout + chr3R 13120876 intron timeout + chr3R_11_13120001 chr3R_13120001 RAL-776 1325 chr3R 13135829 13135844 chr3R 13138004 13138019 pogo 6 2175 5.5 4.5 5.0 1.0 2190 chr3R 13135829 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13136924 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13138019 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_6_13135001 chr3R_13135001 RAL-776 1326 chr3R 13143049 13143066 chr3R 13148625 13148630 mdg3 7 5574 2.0 5.5 3.8 1.5 5581 chr3R 13143049 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13145840 intron,intron,intron timeout +,2mit -,CR45109 - chr3R 13148630 intron,intron,intron timeout +,2mit -,CR45109 - chr3R_7_13145001 chr3R_13145001 RAL-776 1327 chr3R 13240022 13240048 chr3R 13240111 13240136 9 89 0.5 3.0 1.8 3.2 114 chr3R 13240022 intron Ace - chr3R 13240079 intron Ace - chr3R 13240136 intron Ace - chr3R_9_13240001 chr3R_13240001 RAL-776 1328 chr3R 13378837 13378869 chr3R 13378928 13378959 8 91 1.5 1.5 1.5 3.2 122 chr3R 13378837 intron CG9813 - chr3R 13378898 intron CG9813 - chr3R 13378959 intron CG9813 - chr3R_8_13375001 chr3R_13375001 RAL-776 1329 chr3R 13482079 13482100 chr3R 13482161 13482182 7 81 2.5 2.5 2.5 2.0 103 chr3R 13482079 intergenic not near genes chr3R 13482130 intergenic not near genes chr3R 13482182 intergenic not near genes chr3R_7_13480001 chr3R_13480001 RAL-776 1330 chr3R 13517225 13517238 chr3R 13520040 13520052 jockey 5 2815 1.5 0.5 1.0 2.5 2827 chr3R 13517225 intergenic not near genes chr3R 13518638 intergenic not near genes chr3R 13520052 intergenic not near genes chr3R_5_13515001 chr3R_13515001 RAL-776 1331 chr3R 13558967 13558982 chr3R 13559176 13559192 7 209 0.5 1.0 0.8 3.9 225 chr3R 13558967 intergenic not near genes chr3R 13559080 intergenic not near genes chr3R 13559192 intergenic not near genes chr3R_7_13555001 chr3R_13555001 RAL-776 1332 chr3R 13562379 13562408 chr3R 13562463 13562492 11 84 3.0 0.5 1.8 3.9 113 chr3R 13562379 intergenic not near genes chr3R 13562436 intergenic not near genes chr3R 13562492 intergenic not near genes chr3R_11_13560001 chr3R_13560001 RAL-776 1333 chr3R 13693028 13693028 chr3R 21907534 21907536 16 8214507 10.0 18.5 14.2 1.1 8214508 chr3R 13693028 3` UTR flfl + chr3R 17800282 exon CG17803 - chr3R 21907536 intergenic CG6678 + chr3R_16_17800001 chr3R_17800001 RAL-776 1334 chr3R 13872176 13872193 chr3R 13872252 13872271 7 78 3.5 3.5 3.5 1.6 95 chr3R 13872176 intron E5 - chr3R 13872224 intron E5 - chr3R 13872271 intron E5 - chr3R_7_13870001 chr3R_13870001 RAL-776 1335 chr3R 13948228 13948242 chr3R 13948321 13948335 4 93 2.5 0.5 1.5 1.6 107 chr3R 13948228 intergenic CG31517 + chr3R 13948282 intergenic CG31517 + chr3R 13948335 intergenic CG31517 + chr3R_4_13945001 chr3R_13945001 RAL-776 1336 chr3R 14062854 14062877 chr3R 14062923 14062953 5 75 2.0 3.5 2.8 1.3 99 chr3R 14062854 intron foxo + chr3R 14062904 intron foxo + chr3R 14062953 intron foxo + chr3R_5_14060001 chr3R_14060001 RAL-776 1337 chr3R 14083402 14083437 chr3R 14083503 14083538 8 101 2.0 0.0 1.0 4.0 136 chr3R 14083402 intron foxo + chr3R 14083470 intron foxo + chr3R 14083538 intron foxo + chr3R_8_14080001 chr3R_14080001 RAL-776 1338 chr3R 14117445 14117460 chr3R 14117521 14117535 5 76 4.0 2.0 3.0 1.2 90 chr3R 14117445 intron Kif19A - chr3R 14117490 intron Kif19A - chr3R 14117535 intron Kif19A - chr3R_5_14115001 chr3R_14115001 RAL-776 1339 chr3R 14258491 14258495 chr3R 14258573 14258581 5 85 5.0 4.5 4.8 0.9 90 chr3R 14258491 intron Aats-met - chr3R 14258536 intron Aats-met - chr3R 14258581 intron Aats-met - chr3R_5_14255001 chr3R_14255001 RAL-776 1340 chr3R 14281370 14281404 chr3R 14281449 14281483 7 79 1.5 1.0 1.2 3.2 113 chr3R 14281370 intron trx - chr3R 14281426 intron trx - chr3R 14281483 intron trx - chr3R_7_14280001 chr3R_14280001 RAL-776 1341 chr3R 14440721 14440755 chr3R 14440797 14440831 7 76 1.5 2.0 1.8 2.5 110 chr3R 14440721 intron cv-c - chr3R 14440776 intron cv-c - chr3R 14440831 intron cv-c - chr3R_7_14440001 chr3R_14440001 RAL-776 1342 chr3R 14458893 14458912 chr3R 14458970 14458993 4 80 0.0 1.5 0.8 2.2 100 chr3R 14458893 intron cv-c - chr3R 14458943 intron cv-c - chr3R 14458993 intron cv-c - chr3R_4_14455001 chr3R_14455001 RAL-776 1343 chr3R 14527403 14527411 chr3R 14527480 14527484 7 76 8.0 5.0 6.5 0.9 81 chr3R 14527403 intron Pde6 - chr3R 14527444 intron Pde6 - chr3R 14527484 intron Pde6 - chr3R_7_14525001 chr3R_14525001 RAL-776 1344 chr3R 14612438 14612459 chr3R 14612558 14612579 5 120 4.0 5.0 4.5 0.9 141 chr3R 14612438 intron CG14853 + chr3R 14612508 intron CG14853 + chr3R 14612579 intron CG14853 + chr3R_5_14610001 chr3R_14610001 RAL-776 1345 chr3R 14662314 14662340 chr3R 14662395 14662421 13 80 4.0 4.0 4.0 2.6 107 chr3R 14662314 exon Rad17 - chr3R 14662368 intron Rad17 - chr3R 14662421 exon Rad17 - chr3R_13_14660001 chr3R_14660001 RAL-776 1346 chr3R 14671800 14671834 chr3R 14671910 14671929 15 106 3.5 1.0 2.2 4.7 129 chr3R 14671800 exon Meltrin - chr3R 14671864 intron Meltrin - chr3R 14671929 intron Meltrin - chr3R_15_14670001 chr3R_14670001 RAL-776 1347 chr3R 14687279 14687292 chr3R 14687370 14687383 6 91 1.5 3.5 2.5 1.7 104 chr3R 14687279 intron Meltrin - chr3R 14687331 intron Meltrin - chr3R 14687383 intron Meltrin - chr3R_6_14685001 chr3R_14685001 RAL-776 1348 chr3R 14704387 14704417 chr3R 14704459 14704494 7 76 2.5 4.5 3.5 1.6 107 chr3R 14704387 intron kibra - chr3R 14704440 intron kibra - chr3R 14704494 intron kibra - chr3R_7_14700001 chr3R_14700001 RAL-776 1349 chr3R 14779066 14779093 chr3R 14779146 14779173 7 79 2.0 2.5 2.2 2.2 107 chr3R 14779066 intron jvl + chr3R 14779120 intron jvl + chr3R 14779173 intron jvl + chr3R_7_14775001 chr3R_14775001 RAL-776 1350 chr3R 14847037 14847070 chr3R 14847123 14847157 15 85 5.0 0.5 2.8 3.9 120 chr3R 14847037 intron btsz - chr3R 14847097 intron btsz - chr3R 14847157 intron btsz - chr3R_15_14845001 chr3R_14845001 RAL-776 1351 chr3R 14873048 14873066 chr3R 14873209 14873228 6 161 1.0 8.0 4.5 1.1 180 chr3R 14873048 intron btsz - chr3R 14873138 intron btsz - chr3R 14873228 intron btsz - chr3R_6_14870001 chr3R_14870001 RAL-776 1352 chr3R 15006012 15006019 chr3R 15006088 15006095 4 76 0.5 0.0 0.2 3.3 83 chr3R 15006012 intergenic not near genes chr3R 15006054 intergenic not near genes chr3R 15006095 intergenic not near genes chr3R_4_15005001 chr3R_15005001 RAL-776 1353 chr3R 15010842 15010867 chr3R 15010930 15010955 10 87 1.0 3.5 2.2 3.1 113 chr3R 15010842 intergenic not near genes chr3R 15010898 intergenic not near genes chr3R 15010955 intergenic not near genes chr3R_10_15010001 chr3R_15010001 RAL-776 1354 chr3R 15041423 15041457 chr3R 15045189 15045225 Doc 8 3768 1.0 4.0 2.5 2.3 3802 chr3R 15041423 intergenic not near genes chr3R 15043324 intergenic not near genes chr3R 15045225 intergenic not near genes chr3R_8_15040001 chr3R_15040001 RAL-776 1355 chr3R 15046696 15046702 chr3R 15046776 15046786 4 83 1.5 4.5 3.0 1.0 90 chr3R 15046696 intergenic not near genes chr3R 15046741 intergenic not near genes chr3R 15046786 intergenic not near genes chr3R_4_15045001 chr3R_15045001 RAL-776 1356 chr3R 15048362 15048389 chr3R 15048443 15048470 10 80 1.5 6.5 4.0 2.0 108 chr3R 15048362 intergenic not near genes chr3R 15048416 intergenic not near genes chr3R 15048470 intergenic not near genes chr3R_10_15045001 chr3R_15045001 RAL-776 1357 chr3R 15054108 15054137 chr3R 15054225 15054225 5 110 3.5 4.5 4.0 1.0 117 chr3R 15054108 intergenic not near genes chr3R 15054166 intergenic not near genes chr3R 15054225 intergenic not near genes chr3R_5_15050001 chr3R_15050001 RAL-776 1358 chr3R 15075971 15075986 chr3R 15076057 15076072 7 86 3.0 2.0 2.5 2.0 101 chr3R 15075971 intron dpr9 - chr3R 15076022 intron dpr9 - chr3R 15076072 intron dpr9 - chr3R_7_15075001 chr3R_15075001 RAL-776 1359 chr3R 15087763 15087798 chr3R 15087848 15087883 9 85 2.0 3.0 2.5 2.6 120 chr3R 15087763 intron CG6966 - chr3R 15087823 intron CG6966 - chr3R 15087883 intron CG6966 - chr3R_9_15085001 chr3R_15085001 RAL-776 1360 chr3R 15112993 15113017 chr3R 15113089 15113116 9 96 1.0 3.0 2.0 3.0 123 chr3R 15112993 intron CG42788 - chr3R 15113054 intron CG42788 - chr3R 15113116 intron CG42788 - chr3R_9_15110001 chr3R_15110001 RAL-776 1361 chr3R 15132071 15132086 chr3R 15135117 15135143 Juan 7 3057 4.0 4.5 4.2 1.3 3072 chr3R 15132071 intergenic CG42788 - chr3R 15133607 intergenic not near genes chr3R 15135143 3` UTR CG6912 - chr3R_7_15130001 chr3R_15130001 RAL-776 1362 chr3R 15162558 15162563 chr3R 15167308 15167331 F-element 4 4764 2.5 0.0 1.2 1.8 4773 chr3R 15162558 intron Gyc88E + chr3R 15164944 intron Gyc88E + chr3R 15167331 intron Gyc88E + chr3R_4_15160001 chr3R_15160001 RAL-776 1363 chr3R 15167815 15167833 chr3R 15167961 15167990 6 155 2.0 1.0 1.5 2.4 175 chr3R 15167815 intron Gyc88E + chr3R 15167902 intron Gyc88E + chr3R 15167990 intron Gyc88E + chr3R_6_15165001 chr3R_15165001 RAL-776 1364 chr3R 15286987 15286988 chr3R 21907534 21907536 11 6620548 20.0 18.5 19.2 0.5 6620549 chr3R 15286987 intron Tm1 + chr3R 18597262 intron,exon qin +,CG14304 - chr3R 21907536 intergenic CG6678 + chr3R_11_18595001 chr3R_18595001 RAL-776 1365 chr3R 15302505 15302535 chr3R 15302583 15302612 11 74 1.5 1.0 1.2 5.0 107 chr3R 15302505 intron Tm1 + chr3R 15302558 intron Tm1 + chr3R 15302612 intron Tm1 + chr3R_11_15300001 chr3R_15300001 RAL-776 1366 chr3R 15439567 15439573 chr3R 15439707 15439713 6 140 3.5 0.0 1.8 2.1 146 chr3R 15439567 intergenic Act88F + chr3R 15439640 intergenic Act88F + chr3R 15439713 intergenic Act88F + chr3R_6_15435001 chr3R_15435001 RAL-776 1367 chr3R 15452277 15452306 chr3R 15452354 15452382 9 76 3.0 3.5 3.2 2.1 105 chr3R 15452277 intron AdamTS-A - chr3R 15452330 intron AdamTS-A - chr3R 15452382 intron AdamTS-A - chr3R_9_15450001 chr3R_15450001 RAL-776 1368 chr3R 15531635 15531654 chr3R 15531808 15531827 5 172 4.0 2.0 3.0 1.2 192 chr3R 15531635 intergenic CG31296 - chr3R 15531731 intergenic CG31296 -,CG18522 - chr3R 15531827 intergenic CG18522 -,CG31296 - chr3R_5_15530001 chr3R_15530001 RAL-776 1369 chr3R 15594656 15594674 chr3R 15594739 15594757 4 83 0.0 3.0 1.5 1.6 101 chr3R 15594656 intergenic not near genes chr3R 15594706 intergenic not near genes chr3R 15594757 intergenic not near genes chr3R_4_15590001 chr3R_15590001 RAL-776 1370 chr3R 15601176 15601195 chr3R 15608692 15608715 412 6 7521 3.0 8.5 5.8 0.9 7539 chr3R 15601176 intergenic not near genes chr3R 15604946 intergenic not near genes chr3R 15608715 intergenic not near genes chr3R_6_15600001 chr3R_15600001 RAL-776 1371 chr3R 15635208 15635225 chr3R 15635309 15635326 4 101 3.0 0.5 1.8 1.4 118 chr3R 15635208 intergenic CG43335 + chr3R 15635267 intergenic CG43335 + chr3R 15635326 intergenic CG43335 + chr3R_4_15635001 chr3R_15635001 RAL-776 1372 chr3R 15664509 15664536 chr3R 15664588 15664615 13 79 1.5 2.5 2.0 4.3 106 chr3R 15664509 intergenic not near genes chr3R 15664562 intergenic not near genes chr3R 15664615 intergenic not near genes chr3R_13_15660001 chr3R_15660001 RAL-776 1373 chr3R 15676567 15676572 chr3R 15676646 15676650 4 79 2.5 7.5 5.0 0.7 83 chr3R 15676567 intron pxb + chr3R 15676608 intron pxb + chr3R 15676650 intron pxb + chr3R_4_15675001 chr3R_15675001 RAL-776 1374 chr3R 15676580 15676580 chr3R 15676636 15676659 4 69 1.0 5.0 3.0 1.0 79 chr3R 15676580 intron pxb + chr3R 15676620 intron pxb + chr3R 15676659 intron pxb + chr3R_4_15675001 chr3R_15675001 RAL-776 1375 chr3R 15697443 15697468 chr3R 15697533 15697557 9 88 6.5 4.5 5.5 1.4 114 chr3R 15697443 5` UTR CR45635 + chr3R 15697500 5` UTR CR45635 + chr3R 15697557 5` UTR CR45635 + chr3R_9_15695001 chr3R_15695001 RAL-776 1376 chr3R 15716847 15716871 chr3R 15716941 15716970 9 98 3.0 4.0 3.5 2.0 123 chr3R 15716847 intergenic CG31294 - chr3R 15716908 intergenic CG31294 - chr3R 15716970 intergenic CG31294 - chr3R_9_15715001 chr3R_15715001 RAL-776 1377 chr3R 15760784 15760804 chr3R 15760878 15760898 4 94 2.5 3.0 2.8 1.1 114 chr3R 15760784 intergenic not near genes chr3R 15760841 intergenic not near genes chr3R 15760898 intergenic not near genes chr3R_4_15760001 chr3R_15760001 RAL-776 1378 chr3R 15790154 15790287 chr3R 15790262 15790405 12 115 6.0 5.5 5.8 1.8 251 chr3R 15790154 exon c(3)G - chr3R 15790280 exon c(3)G - chr3R 15790405 exon c(3)G - chr3R_12_15790001 chr3R_15790001 RAL-776 1379 chr3R 15790381 15790393 chr3R 15790587 15790599 9 205 6.0 18.0 12.0 0.7 218 chr3R 15790381 exon c(3)G - chr3R 15790490 exon c(3)G - chr3R 15790599 exon c(3)G - chr3R_9_15790001 chr3R_15790001 RAL-776 1380 chr3R 15790399 15790403 chr3R 15790580 15790609 4 193 7.0 17.0 12.0 0.3 210 chr3R 15790399 exon c(3)G - chr3R 15790504 exon c(3)G - chr3R 15790609 exon c(3)G - chr3R_4_15790001 chr3R_15790001 RAL-776 1381 chr3R 15790848 15790873 chr3R 15790963 15790989 9 115 10.0 11.0 10.5 0.8 141 chr3R 15790848 exon c(3)G - chr3R 15790918 intron c(3)G - chr3R 15790989 exon c(3)G - chr3R_9_15790001 chr3R_15790001 RAL-776 1382 chr3R 15901154 15901176 chr3R 15901249 15901271 11 95 4.5 4.5 4.5 2.0 117 chr3R 15901154 intron glob1 - chr3R 15901212 intron glob1 - chr3R 15901271 intron glob1 - chr3R_11_15900001 chr3R_15900001 RAL-776 1383 chr3R 15947140 15947160 chr3R 15947222 15947238 6 81 2.5 3.0 2.8 1.6 98 chr3R 15947140 intron Sap47 + chr3R 15947189 intron Sap47 + chr3R 15947238 intron Sap47 + chr3R_6_15945001 chr3R_15945001 RAL-776 1384 chr3R 16033419 16033427 chr3R 16033500 16033508 4 81 3.0 0.5 1.8 1.4 89 chr3R 16033419 intron pnr + chr3R 16033464 intron pnr + chr3R 16033508 intron pnr + chr3R_4_16030001 chr3R_16030001 RAL-776 1385 chr3R 16073455 16073471 chr3R 16073553 16073574 5 103 2.5 0.5 1.5 2.0 119 chr3R 16073455 intron Mhcl - chr3R 16073514 intron Mhcl - chr3R 16073574 intron Mhcl - chr3R_5_16070001 chr3R_16070001 RAL-776 1386 chr3R 16116637 16116647 chr3R 16116719 16116729 6 82 2.0 4.5 3.2 1.4 92 chr3R 16116637 intron Sb + chr3R 16116683 intron Sb + chr3R 16116729 intron Sb + chr3R_6_16115001 chr3R_16115001 RAL-776 1387 chr3R 16225088 16225104 chr3R 16225173 16225189 5 84 3.5 1.5 2.5 1.4 101 chr3R 16225088 intergenic not near genes chr3R 16225138 intergenic not near genes chr3R 16225189 intergenic tara + chr3R_5_16225001 chr3R_16225001 RAL-776 1388 chr3R 16230605 16230638 chr3R 16230685 16230704 13 76 2.5 2.0 2.2 4.1 99 chr3R 16230605 intron tara + chr3R 16230654 intron tara + chr3R 16230704 intron tara + chr3R_13_16230001 chr3R_16230001 RAL-776 1389 chr3R 16671243 16671260 chr3R 16671322 16671337 8 78 0.0 4.0 2.0 2.7 94 chr3R 16671243 intron Ubx - chr3R 16671290 intron Ubx - chr3R 16671337 intron Ubx - chr3R_8_16670001 chr3R_16670001 RAL-776 1390 chr3R 16734881 16734890 chr3R 16734963 16734972 4 82 0.0 0.5 0.2 3.3 91 chr3R 16734881 intergenic Ubx - chr3R 16734926 intergenic Ubx - chr3R 16734972 intergenic not near genes chr3R_4_16730001 chr3R_16730001 RAL-776 1391 chr3R 16756318 16756351 chr3R 16762509 16762542 diver 11 6189 2.0 1.5 1.8 3.9 6224 chr3R 16756318 intron bxd - chr3R 16759430 intron bxd - chr3R 16762542 intron bxd - chr3R_11_16755001 chr3R_16755001 RAL-776 1392 chr3R 16786819 16786843 chr3R 16786899 16786925 6 82 2.0 3.0 2.5 1.7 106 chr3R 16786819 intergenic not near genes chr3R 16786872 intergenic not near genes chr3R 16786925 intergenic not near genes chr3R_6_16785001 chr3R_16785001 RAL-776 1393 chr3R 16803463 16803483 chr3R 16803536 16803554 5 71 4.5 4.5 4.5 0.9 91 chr3R 16803463 intergenic not near genes chr3R 16803508 intergenic not near genes chr3R 16803554 intergenic not near genes chr3R_5_16800001 chr3R_16800001 RAL-776 1394 chr3R 16806261 16806266 chr3R 16806400 16806409 5 142 2.5 4.0 3.2 1.2 148 chr3R 16806261 intergenic not near genes chr3R 16806335 intergenic not near genes chr3R 16806409 intergenic not near genes chr3R_5_16805001 chr3R_16805001 RAL-776 1395 chr3R 16806275 16806286 chr3R 16806396 16806428 6 139 1.5 2.5 2.0 2.0 153 chr3R 16806275 intergenic not near genes chr3R 16806352 intergenic not near genes chr3R 16806428 intergenic not near genes chr3R_6_16805001 chr3R_16805001 RAL-776 1396 chr3R 16936951 16936980 chr3R 16937047 16937076 7 96 0.5 2.5 1.5 2.8 125 chr3R 16936951 intron Abd-B - chr3R 16937014 intron Abd-B - chr3R 16937076 intron Abd-B - chr3R_7_16935001 chr3R_16935001 RAL-776 1397 chr3R 17082104 17082132 chr3R 17082183 17082211 9 79 2.5 6.0 4.2 1.7 107 chr3R 17082104 intron kuk + chr3R 17082158 intron kuk + chr3R 17082211 intron kuk + chr3R_9_17080001 chr3R_17080001 RAL-776 1398 chr3R 17135834 17135847 chr3R 17135910 17135923 8 74 0.5 7.0 3.8 1.7 89 chr3R 17135834 intergenic CG5246 + chr3R 17135878 intergenic CG5246 + chr3R 17135923 intergenic CG5246 + chr3R_8_17135001 chr3R_17135001 RAL-776 1399 chr3R 17175738 17175764 chr3R 17175870 17175894 13 131 4.0 6.0 5.0 2.2 156 chr3R 17175738 intron Mur89F - chr3R 17175816 intron Mur89F - chr3R 17175894 intron Mur89F - chr3R_13_17175001 chr3R_17175001 RAL-776 1400 chr3R 17198529 17198538 chr3R 17198607 17198608 5 76 5.0 2.5 3.8 1.0 79 chr3R 17198529 intron Mur89F - chr3R 17198568 intron Mur89F - chr3R 17198608 intron Mur89F - chr3R_5_17195001 chr3R_17195001 RAL-776 1401 chr3R 17294671 17294699 chr3R 17295093 17295127 BS 4 426 1.5 4.5 3.0 1.0 456 chr3R 17294671 intergenic not near genes chr3R 17294899 intergenic not near genes chr3R 17295127 intergenic not near genes chr3R_4_17290001 chr3R_17290001 RAL-776 1402 chr3R 17313369 17313396 chr3R 17313490 17313518 5 119 3.0 1.0 2.0 1.7 149 chr3R 17313369 intergenic not near genes chr3R 17313444 intergenic not near genes chr3R 17313518 intergenic not near genes chr3R_5_17310001 chr3R_17310001 RAL-776 1403 chr3R 17326505 17326518 chr3R 17326587 17326600 4 82 3.0 0.0 1.5 1.6 95 chr3R 17326505 intron beat-IIa - chr3R 17326552 intron beat-IIa - chr3R 17326600 intron beat-IIa - chr3R_4_17325001 chr3R_17325001 RAL-776 1404 chr3R 17329867 17329896 chr3R 17329967 17329996 7 100 2.5 2.5 2.5 2.0 129 chr3R 17329867 intron beat-IIa - chr3R 17329932 intron beat-IIa - chr3R 17329996 intron beat-IIa - chr3R_7_17325001 chr3R_17325001 RAL-776 1405 chr3R 17346691 17346717 chr3R 17348254 17348280 F-element 8 1563 0.5 3.0 1.8 2.9 1589 chr3R 17346691 intron beat-IIa - chr3R 17347486 intron beat-IIa - chr3R 17348280 intron beat-IIa - chr3R_8_17345001 chr3R_17345001 RAL-776 1406 chr3R 17591285 17591321 chr3R 17591721 17591754 F-element 5 435 4.0 4.5 4.2 1.0 469 chr3R 17591285 intergenic not near genes chr3R 17591520 intergenic not near genes chr3R 17591754 intergenic not near genes chr3R_5_17590001 chr3R_17590001 RAL-776 1407 chr3R 17702557 17702585 chr3R 17702672 17702699 8 115 4.0 5.5 4.8 1.4 142 chr3R 17702557 intron osa - chr3R 17702628 intron osa - chr3R 17702699 intron osa - chr3R_8_17700001 chr3R_17700001 RAL-776 1408 chr3R 17711751 17711778 chr3R 17711839 17711868 9 92 1.0 2.5 1.8 3.2 117 chr3R 17711751 intron osa - chr3R 17711810 intron osa - chr3R 17711868 intron osa - chr3R_9_17710001 chr3R_17710001 RAL-776 1409 chr3R 17743221 17743242 chr3R 17743302 17743323 6 81 2.5 1.5 2.0 2.0 102 chr3R 17743221 intron TyrRII + chr3R 17743272 intron TyrRII + chr3R 17743323 intron TyrRII + chr3R_6_17740001 chr3R_17740001 RAL-776 1410 chr3R 17773377 17773389 chr3R 17773472 17773484 4 95 1.0 5.0 3.0 1.0 107 chr3R 17773377 intron CG43102 - chr3R 17773430 intron CG43102 - chr3R 17773484 exon CG43102 - chr3R_4_17770001 chr3R_17770001 RAL-776 1411 chr3R 17818888 17818902 chr3R 17818959 17818981 7 77 4.0 0.5 2.2 2.2 93 chr3R 17818888 intron tinc + chr3R 17818934 intron tinc + chr3R 17818981 intron tinc + chr3R_7_17815001 chr3R_17815001 RAL-776 1412 chr3R 17842066 17842086 chr3R 17842372 17842392 4 306 2.5 1.0 1.8 1.4 326 chr3R 17842066 intron tinc + chr3R 17842229 intron tinc + chr3R 17842392 intron tinc + chr3R_4_17840001 chr3R_17840001 RAL-776 1413 chr3R 17912825 17912843 chr3R 17912905 17912924 5 80 6.5 2.0 4.2 1.0 99 chr3R 17912825 intron Rim - chr3R 17912874 intron Rim - chr3R 17912924 intron Rim - chr3R_5_17910001 chr3R_17910001 RAL-776 1414 chr3R 17922967 17922993 chr3R 17923045 17923076 7 81 4.0 3.5 3.8 1.5 109 chr3R 17922967 intron cpo + chr3R 17923022 intron cpo + chr3R 17923076 intron cpo + chr3R_7_17920001 chr3R_17920001 RAL-776 1415 chr3R 17925871 17925888 chr3R 17927338 17927353 hobo 6 1467 2.0 10.0 6.0 0.9 1482 chr3R 17925871 intron cpo + chr3R 17926612 intron cpo + chr3R 17927353 intron cpo + chr3R_6_17925001 chr3R_17925001 RAL-776 1416 chr3R 18025344 18025363 chr3R 18025425 18025444 6 80 1.0 5.5 3.2 1.4 100 chr3R 18025344 3` UTR CG7794 + chr3R 18025394 intergenic CG7794 + chr3R 18025444 intergenic CG7794 + chr3R_6_18025001 chr3R_18025001 RAL-776 1417 chr3R 18032789 18032802 chr3R 18040457 18040470 opus 4 7668 1.5 0.5 1.0 2.0 7681 chr3R 18032789 intergenic not near genes chr3R 18036630 intergenic not near genes chr3R 18040470 intergenic not near genes chr3R_4_18035001 chr3R_18035001 RAL-776 1418 chr3R 18061592 18061607 chr3R 18063160 18063175 F-element 5 1568 3.0 3.0 3.0 1.2 1583 chr3R 18061592 intergenic not near genes chr3R 18062384 intergenic not near genes chr3R 18063175 intergenic not near genes chr3R_5_18060001 chr3R_18060001 RAL-776 1419 chr3R 18078153 18078181 chr3R 18078232 18078260 5 79 3.0 1.0 2.0 1.7 107 chr3R 18078153 intergenic not near genes chr3R 18078206 intergenic not near genes chr3R 18078260 intergenic not near genes chr3R_5_18075001 chr3R_18075001 RAL-776 1420 chr3R 18209944 18209958 chr3R 18210210 18210226 4 268 4.0 1.5 2.8 1.1 282 chr3R 18209944 intron CG7985 + chr3R 18210085 intron CG7985 + chr3R 18210226 intron CG7985 + chr3R_4_18210001 chr3R_18210001 RAL-776 1421 chr3R 18306991 18307019 chr3R 18307082 18307109 12 90 1.0 0.0 0.5 8.0 118 chr3R 18306991 exon PKD - chr3R 18307050 intron PKD - chr3R 18307109 intron PKD - chr3R_12_18305001 chr3R_18305001 RAL-776 1422 chr3R 18374662 18374679 chr3R 18374765 18374781 7 102 3.0 3.0 3.0 1.8 119 chr3R 18374662 5` UTR CR44946 + chr3R 18374722 5` UTR CR44946 + chr3R 18374781 5` UTR CR44946 + chr3R_7_18370001 chr3R_18370001 RAL-776 1423 chr3R 18510401 18510423 chr3R 18510581 18510603 6 179 3.0 4.5 3.8 1.2 202 chr3R 18510401 intron fru - chr3R 18510502 intron fru - chr3R 18510603 intron fru - chr3R_6_18510001 chr3R_18510001 RAL-776 1424 chr3R 18618272 18618292 chr3R 18618357 18618377 4 84 1.0 1.5 1.2 1.8 105 chr3R 18618272 intron,intron qin +,CG14304 - chr3R 18618324 intron,intron qin +,CG14304 - chr3R 18618377 intron,intron qin +,CG14304 - chr3R_4_18615001 chr3R_18615001 RAL-776 1425 chr3R 18664100 18664116 chr3R 18664177 18664193 6 76 0.0 3.5 1.8 2.1 93 chr3R 18664100 intron Gos28 + chr3R 18664146 intron Gos28 + chr3R 18664193 intron Gos28 + chr3R_6_18660001 chr3R_18660001 RAL-776 1426 chr3R 18695767 18695776 chr3R 18695851 18695858 5 84 3.5 0.0 1.8 1.8 91 chr3R 18695767 3` UTR CG34282 + chr3R 18695812 intergenic CG34282 + chr3R 18695858 intergenic CG34282 + chr3R_5_18695001 chr3R_18695001 RAL-776 1427 chr3R 18730024 18730035 chr3R 18730100 18730111 4 76 2.5 4.0 3.2 1.0 87 chr3R 18730024 intron Cha + chr3R 18730068 intron Cha + chr3R 18730111 exon Cha + chr3R_4_18730001 chr3R_18730001 RAL-776 1428 chr3R 18739685 18739690 chr3R 18739751 18739758 4 73 6.5 6.5 6.5 0.5 73 chr3R 18739685 intron Mekk1 - chr3R 18739722 intron Mekk1 - chr3R 18739758 intron Mekk1 - chr3R_4_18735001 chr3R_18735001 RAL-776 1429 chr3R 18788770 18788775 chr3R 18788829 18788852 4 68 2.5 4.5 3.5 0.9 82 chr3R 18788770 intron CG7720 - chr3R 18788811 intron CG7720 - chr3R 18788852 intron CG7720 - chr3R_4_18785001 chr3R_18785001 RAL-776 1430 chr3R 18817507 18817541 chr3R 18817605 18817638 7 98 1.5 0.5 1.0 3.5 131 chr3R 18817507 intron CG18208 - chr3R 18817572 intron CG18208 - chr3R 18817638 intron CG18208 - chr3R_7_18815001 chr3R_18815001 RAL-776 1431 chr3R 18826318 18826335 chr3R 18826674 18826687 6 357 5.0 2.0 3.5 1.3 369 chr3R 18826318 intron CG18208 - chr3R 18826502 intron CG18208 - chr3R 18826687 intron CG18208 - chr3R_6_18825001 chr3R_18825001 RAL-776 1432 chr3R 18888103 18888133 chr3R 18888188 18888218 7 85 2.0 1.5 1.8 2.5 115 chr3R 18888103 intergenic not near genes chr3R 18888160 intergenic not near genes chr3R 18888218 intergenic not near genes chr3R_7_18885001 chr3R_18885001 RAL-776 1433 chr3R 19008378 19008405 chr3R 19008460 19008488 6 83 3.5 1.5 2.5 1.7 110 chr3R 19008378 intron gukh + chr3R 19008433 intron gukh + chr3R 19008488 intron gukh + chr3R_6_19005001 chr3R_19005001 RAL-776 1434 chr3R 19033925 19033960 chr3R 19034003 19034037 11 77 3.0 4.5 3.8 2.3 112 chr3R 19033925 intron CG6026 + chr3R 19033981 intron CG6026 + chr3R 19034037 intron CG6026 + chr3R_11_19030001 chr3R_19030001 RAL-776 1435 chr3R 19226702 19226737 chr3R 19230874 19230908 9 4172 12.0 30.5 21.2 0.4 4206 chr3R 19226702 intergenic vib -,CG11703 - chr3R 19228805 exon CG5250 - chr3R 19230908 exon unc79 - chr3R_9_19225001 chr3R_19225001 RAL-776 1436 chr3R 19253293 19253325 chr3R 19253392 19253412 10 95 2.5 1.5 2.0 3.3 119 chr3R 19253293 intergenic not near genes chr3R 19253352 intergenic not near genes chr3R 19253412 intergenic not near genes chr3R_10_19250001 chr3R_19250001 RAL-776 1437 chr3R 19288383 19288395 chr3R 19288467 19288478 4 84 0.0 4.0 2.0 1.3 95 chr3R 19288383 5` UTR CR43451 + chr3R 19288430 5` UTR CR43451 + chr3R 19288478 5` UTR CR43451 + chr3R_4_19285001 chr3R_19285001 RAL-776 1438 chr3R 19367583 19367607 chr3R 19367672 19367696 4 89 1.5 1.5 1.5 1.6 113 chr3R 19367583 intergenic not near genes chr3R 19367640 intergenic not near genes chr3R 19367696 intergenic not near genes chr3R_4_19365001 chr3R_19365001 RAL-776 1439 chr3R 19460819 19460835 chr3R 19460925 19460941 5 106 2.0 5.5 3.8 1.0 122 chr3R 19460819 intergenic Dys + chr3R 19460880 intergenic Dys + chr3R 19460941 intergenic Dys + chr3R_5_19460001 chr3R_19460001 RAL-776 1440 chr3R 19604699 19604705 chr3R 19604826 19604838 4 132 3.0 4.0 3.5 0.9 139 chr3R 19604699 exon CG7342 + chr3R 19604768 intron CG7342 + chr3R 19604838 intron CG7342 + chr3R_4_19600001 chr3R_19600001 RAL-776 1441 chr3R 19611996 19612015 chr3R 19616030 19616048 5 4034 18.5 6.5 12.5 0.4 4052 chr3R 19611996 exon CG17752 + chr3R 19614022 exon CG16727 + chr3R 19616048 3` UTR CG6231 - chr3R_5_19610001 chr3R_19610001 RAL-776 1442 chr3R 19657679 19657713 chr3R 19657771 19657782 8 88 1.0 2.5 1.8 2.9 103 chr3R 19657679 5` UTR CG6184 - chr3R 19657730 5` UTR CG6184 - chr3R 19657782 5` UTR CG6184 - chr3R_8_19655001 chr3R_19655001 RAL-776 1443 chr3R 19669092 19669122 chr3R 19669175 19669198 8 78 2.0 5.5 3.8 1.7 106 chr3R 19669092 exon CG7432 + chr3R 19669145 exon CG7432 + chr3R 19669198 exon CG7432 + chr3R_8_19665001 chr3R_19665001 RAL-776 1444 chr3R 19675351 19675359 chr3R 19675501 19675508 4 150 2.0 1.0 1.5 1.6 157 chr3R 19675351 intron Naam + chr3R 19675430 intron Naam + chr3R 19675508 intron Naam + chr3R_4_19675001 chr3R_19675001 RAL-776 1445 chr3R 19894797 19894831 chr3R 19894873 19894907 15 75 1.5 2.5 2.0 5.0 110 chr3R 19894797 intron CG4733 + chr3R 19894852 intron CG4733 + chr3R 19894907 intron CG4733 + chr3R_15_19890001 chr3R_19890001 RAL-776 1446 chr3R 19925175 19925180 chr3R 19925294 19925301 4 120 3.0 5.5 4.2 0.8 126 chr3R 19925175 5` UTR CG4462 - chr3R 19925238 5` UTR CG4462 - chr3R 19925301 5` UTR CG4462 - chr3R_4_19925001 chr3R_19925001 RAL-776 1447 chr3R 20059491 20059500 chr3R 20059571 20059580 5 80 4.5 4.5 4.5 0.9 89 chr3R 20059491 intron CG4390 - chr3R 20059536 intron CG4390 - chr3R 20059580 exon CG4390 - chr3R_5_20055001 chr3R_20055001 RAL-776 1448 chr3R 20066117 20066132 chr3R 20066305 20066322 8 190 5.5 1.0 3.2 1.9 205 chr3R 20066117 intergenic not near genes chr3R 20066220 intergenic not near genes chr3R 20066322 intergenic not near genes chr3R_8_20065001 chr3R_20065001 RAL-776 1449 chr3R 20066550 20066584 chr3R 20066786 20066816 5 235 1.0 2.0 1.5 2.0 266 chr3R 20066550 intergenic not near genes chr3R 20066683 intergenic not near genes chr3R 20066816 intergenic not near genes chr3R_5_20065001 chr3R_20065001 RAL-776 1450 chr3R 20109540 20109561 chr3R 20114746 20114767 copia 5 5206 3.0 1.0 2.0 1.7 5227 chr3R 20109540 intergenic not near genes chr3R 20112154 intergenic not near genes chr3R 20114767 intergenic CG10887 + chr3R_5_20110001 chr3R_20110001 RAL-776 1451 chr3R 20156703 20156721 chr3R 20165869 20165891 roo 4 9166 3.5 4.0 3.8 0.8 9188 chr3R 20156703 intergenic not near genes chr3R 20161297 intergenic not near genes chr3R 20165891 intergenic not near genes chr3R_4_20160001 chr3R_20160001 RAL-776 1452 chr3R 20213287 20213301 chr3R 20213363 20213377 6 76 0.0 2.0 1.0 3.0 90 chr3R 20213287 intron Nlg4 + chr3R 20213332 intron Nlg4 + chr3R 20213377 intron Nlg4 + chr3R_6_20210001 chr3R_20210001 RAL-776 1453 chr3R 20266516 20266541 chr3R 20272987 20273012 Burdock 7 6471 3.0 2.0 2.5 2.0 6496 chr3R 20266516 intron cic + chr3R 20269764 intron cic + chr3R 20273012 intron cic + chr3R_7_20265001 chr3R_20265001 RAL-776 1454 chr3R 20331001 20331007 chr3R 20331487 20331487 roo 4 484 4.0 1.0 2.5 1.1 486 chr3R 20331001 intergenic Sirt2 + chr3R 20331244 intergenic Sirt2 + chr3R 20331487 intergenic not near genes chr3R_4_20330001 chr3R_20330001 RAL-776 1455 chr3R 20331671 20331694 chr3R 20331755 20331778 7 82 1.0 2.5 1.8 2.5 107 chr3R 20331671 intergenic not near genes chr3R 20331724 intergenic not near genes chr3R 20331778 intergenic not near genes chr3R_7_20330001 chr3R_20330001 RAL-776 1456 chr3R 20359817 20359839 chr3R 20360216 20360238 5 399 1.0 3.5 2.2 1.6 421 chr3R 20359817 5` UTR CR45023 + chr3R 20360028 intron CR45023 + chr3R 20360238 5` UTR CR45023 + chr3R_5_20360001 chr3R_20360001 RAL-776 1457 chr3R 20388004 20388034 chr3R 20388086 20388117 5 82 1.5 2.5 2.0 1.7 113 chr3R 20388004 intron Gfrl - chr3R 20388060 intron Gfrl - chr3R 20388117 intron Gfrl - chr3R_5_20385001 chr3R_20385001 RAL-776 1458 chr3R 20424951 20424980 chr3R 20425044 20425059 10 90 1.5 6.0 3.8 2.1 108 chr3R 20424951 intron Gfrl - chr3R 20425005 intron Gfrl - chr3R 20425059 intron Gfrl - chr3R_10_20425001 chr3R_20425001 RAL-776 1459 chr3R 20433104 20433123 chr3R 20433194 20433213 7 89 3.0 0.5 1.8 2.5 109 chr3R 20433104 intron Gfrl - chr3R 20433158 intron Gfrl - chr3R 20433213 intron Gfrl - chr3R_7_20430001 chr3R_20430001 RAL-776 1460 chr3R 20506603 20506616 chr3R 20507406 20507419 BS 4 801 1.5 3.0 2.2 1.2 816 chr3R 20506603 intergenic Or92a + chr3R 20507011 intergenic CG4288 - chr3R 20507419 3` UTR CG4288 - chr3R_4_20505001 chr3R_20505001 RAL-776 1461 chr3R 20567212 20567236 chr3R 20567313 20567336 4 101 1.5 2.0 1.8 1.4 124 chr3R 20567212 intron CG5191 + chr3R 20567274 intron CG5191 + chr3R 20567336 intron CG5191 + chr3R_4_20565001 chr3R_20565001 RAL-776 1462 chr3R 20768724 20768747 chr3R 20768807 20768830 5 83 1.0 1.0 1.0 2.5 106 chr3R 20768724 intron Syp + chr3R 20768777 intron Syp + chr3R 20768830 intron Syp + chr3R_5_20765001 chr3R_20765001 RAL-776 1463 chr3R 20854490 20854503 chr3R 20859280 20859293 Doc 4 4790 7.5 2.5 5.0 0.7 4803 chr3R 20854490 intron Ir93a - chr3R 20856892 intron Ir93a - chr3R 20859293 exon Ir93a - chr3R_4_20855001 chr3R_20855001 RAL-776 1464 chr3R 20901445 20901673 chr3R 20901525 20901776 7 89 6.5 3.5 5.0 1.2 331 chr3R 20901445 intergenic not near genes chr3R 20901610 intergenic CG5621 + chr3R 20901776 intergenic CG5621 + chr3R_7_20900001 chr3R_20900001 RAL-776 1465 chr3R 20940905 20940915 chr3R 20941052 20941071 5 154 3.5 0.0 1.8 1.8 166 chr3R 20940905 intron CG31191 - chr3R 20940988 intron CG31191 - chr3R 20941071 intron CG31191 - chr3R_5_20940001 chr3R_20940001 RAL-776 1466 chr3R 21049877 21049903 chr3R 21050070 21050096 4 193 2.0 3.5 2.8 1.1 219 chr3R 21049877 intergenic CG17279 - chr3R 21049986 intergenic CG17279 - chr3R 21050096 exon CG17279 - chr3R_4_21045001 chr3R_21045001 RAL-776 1467 chr3R 21073589 21073601 chr3R 21073678 21073689 5 89 2.0 2.0 2.0 1.7 100 chr3R 21073589 intergenic r-l -,dmrt93B + chr3R 21073639 intergenic r-l -,dmrt93B + chr3R 21073689 intergenic dmrt93B +,r-l - chr3R_5_21070001 chr3R_21070001 RAL-776 1468 chr3R 21074814 21074831 chr3R 21075025 21075052 7 216 0.0 2.5 1.2 3.2 238 chr3R 21074814 intron dmrt93B + chr3R 21074933 intron dmrt93B + chr3R 21075052 intron dmrt93B + chr3R_7_21070001 chr3R_21070001 RAL-776 1469 chr3R 21123085 21123124 chr3R 21123213 21123246 10 120 5.0 1.0 3.0 2.5 161 chr3R 21123085 intron slmb - chr3R 21123166 intron slmb - chr3R 21123246 intron slmb - chr3R_10_21120001 chr3R_21120001 RAL-776 1470 chr3R 21141691 21141704 chr3R 21150158 21150161 Tirant 4 8466 1.0 3.5 2.2 1.2 8470 chr3R 21141691 intron SNF4Agamma + chr3R 21145926 intron SNF4Agamma + chr3R 21150161 intron SNF4Agamma + chr3R_4_21145001 chr3R_21145001 RAL-776 1471 chr3R 21195659 21195670 chr3R 21195742 21195753 5 83 3.0 0.5 1.8 1.8 94 chr3R 21195659 intron SNF4Agamma + chr3R 21195706 intron SNF4Agamma + chr3R 21195753 intron SNF4Agamma + chr3R_5_21195001 chr3R_21195001 RAL-776 1472 chr3R 21236468 21236498 chr3R 21236545 21236575 13 76 4.0 2.0 3.0 3.2 107 chr3R 21236468 intron e - chr3R 21236522 intron e - chr3R 21236575 intron e - chr3R_13_21235001 chr3R_21235001 RAL-776 1473 chr3R 21317089 21317109 chr3R 21317173 21317193 7 83 5.5 0.0 2.8 1.8 104 chr3R 21317089 5` UTR Hsromega + chr3R 21317141 5` UTR Hsromega + chr3R 21317193 5` UTR Hsromega + chr3R_7_21315001 chr3R_21315001 RAL-776 1474 chr3R 9393034 9393035 chr3R 21326809 21326811 4 11933775 14.0 17.5 15.8 0.2 11933777 chr3R 9393034 intron FER - chr3R 15359922 exon ldlCp - chr3R 21326811 intron CG16791 - chr3R_4_15355001 chr3R_15355001 RAL-776 1475 chr3R 21336251 21336275 chr3R 21336526 21336550 8 274 3.0 3.0 3.0 2.0 299 chr3R 21336251 intron CG16791 - chr3R 21336400 intron CG16791 - chr3R 21336550 intron CG16791 - chr3R_8_21335001 chr3R_21335001 RAL-776 1476 chr3R 21408527 21408551 chr3R 21408604 21408613 6 72 7.0 5.5 6.2 0.8 86 chr3R 21408527 intergenic CheB93a + chr3R 21408570 intergenic CheB93a + chr3R 21408613 intergenic CheB93a + chr3R_6_21405001 chr3R_21405001 RAL-776 1477 chr3R 21472013 21472031 chr3R 21472094 21472112 7 79 1.0 0.5 0.8 3.9 99 chr3R 21472013 intergenic not near genes chr3R 21472062 intergenic not near genes chr3R 21472112 intergenic not near genes chr3R_7_21470001 chr3R_21470001 RAL-776 1478 chr3R 21474768 21474803 chr3R 21474900 21474908 11 125 3.5 2.5 3.0 2.8 140 chr3R 21474768 intergenic not near genes chr3R 21474838 intergenic not near genes chr3R 21474908 intergenic not near genes chr3R_11_21470001 chr3R_21470001 RAL-776 1479 chr3R 21506874 21506913 chr3R 21506960 21506993 7 79 0.0 0.5 0.2 5.8 119 chr3R 21506874 intron C15 + chr3R 21506934 intron C15 + chr3R 21506993 intron C15 + chr3R_7_21505001 chr3R_21505001 RAL-776 1480 chr3R 21520003 21520137 chr3R 21520104 21520231 6 95 0.5 1.0 0.8 3.3 228 chr3R 21520003 intergenic not near genes chr3R 21520117 intergenic not near genes chr3R 21520231 intergenic not near genes chr3R_6_21520001 chr3R_21520001 RAL-776 1481 chr3R 21662188 21662216 chr3R 21662316 21662348 10 131 2.0 2.5 2.2 3.1 160 chr3R 21662188 exon CG6353 - chr3R 21662268 intron CG6353 - chr3R 21662348 intron CG6353 - chr3R_10_21660001 chr3R_21660001 RAL-776 1482 chr3R 21725671 21725687 chr3R 21725807 21725823 4 136 0.0 2.0 1.0 2.0 152 chr3R 21725671 intergenic not near genes chr3R 21725747 intergenic not near genes chr3R 21725823 intergenic not near genes chr3R_4_21725001 chr3R_21725001 RAL-776 1483 chr3R 21734870 21734887 chr3R 21734946 21734962 6 76 7.5 0.0 3.8 1.2 92 chr3R 21734870 intergenic not near genes chr3R 21734916 intergenic not near genes chr3R 21734962 intergenic not near genes chr3R_6_21730001 chr3R_21730001 RAL-776 1484 chr3R 21761128 21761154 chr3R 21768510 21768546 mdg1 7 7387 4.5 3.5 4.0 1.4 7418 chr3R 21761128 exon CG42335 + chr3R 21764837 intron CG42335 + chr3R 21768546 exon CG42335 + chr3R_7_21760001 chr3R_21760001 RAL-776 1485 chr3R 21907534 21907534 chr3R 28831801 28831802 11 6924268 23.0 21.0 22.0 0.5 6924268 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_11_25365001 chr3R_25365001 RAL-776 1486 chr3R 21907535 21907535 chr3R 28831801 28831802 12 6924267 23.0 21.0 22.0 0.5 6924267 chr3R 21907535 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831802 intron WASp - chr3R_12_25365001 chr3R_25365001 RAL-776 1487 chr3R 21907536 21907536 chr3R 28831801 28831802 19 6924266 23.0 21.0 22.0 0.8 6924266 chr3R 21907536 intergenic CG6678 + chr3R 25369669 intron Fur1 - chr3R 28831802 intron WASp - chr3R_19_25365001 chr3R_25365001 RAL-776 1488 chr3R 22042877 22042908 chr3R 22042982 22043013 8 103 2.0 2.5 2.2 2.5 136 chr3R 22042877 intron how + chr3R 22042945 5` UTR how + chr3R 22043013 5` UTR how + chr3R_8_22040001 chr3R_22040001 RAL-776 1489 chr3R 22239491 22239525 chr3R 22248551 22248585 roo 6 9060 3.0 3.5 3.2 1.4 9094 chr3R 22239491 intron SKIP + chr3R 22244038 intron SKIP + chr3R 22248585 intron SKIP + chr3R_6_22240001 chr3R_22240001 RAL-776 1490 chr3R 22272349 22272369 chr3R 22272431 22272451 7 82 7.0 1.0 4.0 1.4 102 chr3R 22272349 intron SKIP + chr3R 22272400 intron SKIP + chr3R 22272451 intron SKIP + chr3R_7_22270001 chr3R_22270001 RAL-776 1491 chr3R 22351643 22351652 chr3R 22351721 22351731 4 79 6.0 2.5 4.2 0.8 88 chr3R 22351643 intergenic rdhB + chr3R 22351687 intergenic rdhB + chr3R 22351731 5` UTR rdhB + chr3R_4_22350001 chr3R_22350001 RAL-776 1492 chr3R 22450542 22450571 chr3R 22453182 22453191 NOF 9 2635 5.5 4.0 4.8 1.6 2649 chr3R 22450542 intron CG34376 + chr3R 22451866 intron CG34376 + chr3R 22453191 intron CG34376 + chr3R_9_22450001 chr3R_22450001 RAL-776 1493 chr3R 22591671 22591698 chr3R 22591749 22591778 5 79 2.0 2.0 2.0 1.7 107 chr3R 22591671 intron Efa6 + chr3R 22591724 intron Efa6 + chr3R 22591778 intron Efa6 + chr3R_5_22590001 chr3R_22590001 RAL-776 1494 chr3R 22595184 22595210 chr3R 22595272 22595298 10 86 3.5 5.0 4.2 1.9 114 chr3R 22595184 intron Efa6 + chr3R 22595241 intron Efa6 + chr3R 22595298 intron Efa6 + chr3R_10_22595001 chr3R_22595001 RAL-776 1495 chr3R 22648328 22648350 chr3R 22648407 22648428 9 79 8.0 0.0 4.0 1.8 100 chr3R 22648328 intron wake + chr3R 22648378 intron wake + chr3R 22648428 intron wake + chr3R_9_22645001 chr3R_22645001 RAL-776 1496 chr3R 22654545 22654573 chr3R 22654621 22654649 6 75 5.0 3.0 4.0 1.2 104 chr3R 22654545 intron wake + chr3R 22654597 intron wake + chr3R 22654649 intron wake + chr3R_6_22650001 chr3R_22650001 RAL-776 1497 chr3R 22663506 22663539 chr3R 22663583 22663616 12 77 2.5 7.0 4.8 2.1 110 chr3R 22663506 intron wake + chr3R 22663561 intron wake + chr3R 22663616 intron wake + chr3R_12_22660001 chr3R_22660001 RAL-776 1498 chr3R 22794520 22794552 chr3R 22794596 22794628 8 76 1.0 5.0 3.0 2.0 108 chr3R 22794520 intergenic CG7029 + chr3R 22794574 intergenic not near genes chr3R 22794628 intergenic not near genes chr3R_8_22790001 chr3R_22790001 RAL-776 1499 chr3R 22812209 22812231 chr3R 22812320 22812349 7 117 3.0 6.5 4.8 1.2 140 chr3R 22812209 intergenic not near genes chr3R 22812279 intergenic not near genes chr3R 22812349 intergenic not near genes chr3R_7_22810001 chr3R_22810001 RAL-776 1500 chr3R 22813115 22813137 chr3R 22813243 22813265 5 124 7.0 7.0 7.0 0.6 150 chr3R 22813115 intergenic not near genes chr3R 22813190 intergenic not near genes chr3R 22813265 intergenic not near genes chr3R_5_22810001 chr3R_22810001 RAL-776 1501 chr3R 22818128 22818155 chr3R 22818209 22818221 5 76 6.5 3.5 5.0 0.8 93 chr3R 22818128 intergenic not near genes chr3R 22818174 intergenic not near genes chr3R 22818221 intergenic not near genes chr3R_5_22815001 chr3R_22815001 RAL-776 1502 chr3R 22871437 22871465 chr3R 22871536 22871564 8 99 0.5 3.0 1.8 2.9 127 chr3R 22871437 intergenic not near genes chr3R 22871500 intergenic not near genes chr3R 22871564 intergenic not near genes chr3R_8_22870001 chr3R_22870001 RAL-776 1503 chr3R 22944941 22944954 chr3R 22945019 22945032 4 78 0.0 8.0 4.0 0.8 91 chr3R 22944941 intron klg + chr3R 22944986 intron klg + chr3R 22945032 intron klg + chr3R_4_22940001 chr3R_22940001 RAL-776 1504 chr3R 23075419 23075440 chr3R 23075501 23075523 6 83 2.5 3.0 2.8 1.6 104 chr3R 23075419 intron CG13830 - chr3R 23075471 intron CG13830 - chr3R 23075523 intron CG13830 - chr3R_6_23075001 chr3R_23075001 RAL-776 1505 chr3R 23089005 23089030 chr3R 23089082 23089107 7 77 0.5 2.5 1.5 2.8 102 chr3R 23089005 intron CG13830 - chr3R 23089056 intron CG13830 - chr3R 23089107 intron CG13830 - chr3R_7_23085001 chr3R_23085001 RAL-776 1506 chr3R 23172513 23172537 chr3R 23172623 23172647 7 110 1.5 4.0 2.8 1.8 134 chr3R 23172513 intron Irk1 + chr3R 23172580 intron Irk1 + chr3R 23172647 intron Irk1 + chr3R_7_23170001 chr3R_23170001 RAL-776 1507 chr3R 23182684 23182697 chr3R 23182767 23182779 9 83 3.5 1.5 2.5 2.6 95 chr3R 23182684 intron Irk1 + chr3R 23182732 intron Irk1 + chr3R 23182779 intron Irk1 + chr3R_9_23180001 chr3R_23180001 RAL-776 1508 chr3R 23242496 23242526 chr3R 23242605 23242613 6 102 4.0 0.5 2.2 1.9 117 chr3R 23242496 intron CG4467 - chr3R 23242554 intron CG4467 - chr3R 23242613 intron CG4467 - chr3R_6_23240001 chr3R_23240001 RAL-776 1509 chr3R 23324025 23324057 chr3R 23324111 23324143 9 86 0.5 1.0 0.8 5.0 118 chr3R 23324025 intron pnt - chr3R 23324084 intron pnt - chr3R 23324143 intron pnt - chr3R_9_23320001 chr3R_23320001 RAL-776 1510 chr3R 23416089 23416113 chr3R 23416253 23416268 10 159 24.5 26.5 25.5 0.4 179 chr3R 23416089 intron CG4374 - chr3R 23416178 intron CG4374 - chr3R 23416268 intron CG4374 - chr3R_10_23415001 chr3R_23415001 RAL-776 1511 chr3R 23446280 23446310 chr3R 23446355 23446387 8 77 5.0 3.5 4.2 1.5 107 chr3R 23446280 intron CG4374 - chr3R 23446334 intron CG4374 - chr3R 23446387 intron CG4374 - chr3R_8_23445001 chr3R_23445001 RAL-776 1512 chr3R 23459207 23459225 chr3R 23459525 23459543 8 317 3.5 2.5 3.0 2.0 336 chr3R 23459207 intron CG4374 - chr3R 23459375 intron CG4374 - chr3R 23459543 intron CG4374 - chr3R_8_23455001 chr3R_23455001 RAL-776 1513 chr3R 23543317 23543338 chr3R 23543393 23543415 4 76 0.0 3.5 1.8 1.4 98 chr3R 23543317 intergenic not near genes chr3R 23543366 intergenic not near genes chr3R 23543415 intergenic not near genes chr3R_4_23540001 chr3R_23540001 RAL-776 1514 chr3R 23629822 23629851 chr3R 23629901 23629930 10 76 2.0 3.5 2.8 2.6 108 chr3R 23629822 intron CG31145 - chr3R 23629876 intron CG31145 - chr3R 23629930 intron CG31145 - chr3R_10_23625001 chr3R_23625001 RAL-776 1515 chr3R 23684697 23684727 chr3R 23685183 23685184 roo 6 472 2.0 6.0 4.0 1.2 487 chr3R 23684697 exon CG18754 + chr3R 23684940 intron CG18754 + chr3R 23685184 exon CG18754 + chr3R_6_23680001 chr3R_23680001 RAL-776 1516 chr3R 23722234 23722254 chr3R 23722313 23722341 6 85 0.5 2.0 1.2 2.7 107 chr3R 23722234 intergenic not near genes chr3R 23722288 intergenic not near genes chr3R 23722341 intergenic not near genes chr3R_6_23720001 chr3R_23720001 RAL-776 1517 chr3R 23787518 23787550 chr3R 23787597 23787626 5 78 2.0 2.5 2.2 1.6 108 chr3R 23787518 intron mbc + chr3R 23787572 intron mbc + chr3R 23787626 intron mbc + chr3R_5_23785001 chr3R_23785001 RAL-776 1518 chr3R 23804642 23804653 chr3R 23804721 23804731 5 79 3.0 0.0 1.5 2.0 89 chr3R 23804642 intron,intron CG33111 -,CG34355 + chr3R 23804686 intron,intron CG33111 -,CG34355 + chr3R 23804731 intron,intron CG33111 -,CG34355 + chr3R_5_23800001 chr3R_23800001 RAL-776 1519 chr3R 23876883 23876914 chr3R 23876956 23876990 13 75 4.5 4.5 4.5 2.4 107 chr3R 23876883 intron Pli - chr3R 23876936 intron Pli - chr3R 23876990 intron Pli - chr3R_13_23875001 chr3R_23875001 RAL-776 1520 chr3R 23916482 23916507 chr3R 23916706 23916731 8 223 1.5 3.0 2.2 2.5 249 chr3R 23916482 intron sba - chr3R 23916606 intron sba - chr3R 23916731 intron sba - chr3R_8_23915001 chr3R_23915001 RAL-776 1521 chr3R 23944911 23944934 chr3R 23944996 23945019 7 82 2.5 3.5 3.0 1.8 108 chr3R 23944911 intron CG12268 - chr3R 23944965 intron CG12268 - chr3R 23945019 exon CG12268 - chr3R_7_23940001 chr3R_23940001 RAL-776 1522 chr3R 23949045 23949068 chr3R 23949120 23949145 8 76 1.5 2.0 1.8 2.9 100 chr3R 23949045 intergenic not near genes chr3R 23949095 intergenic not near genes chr3R 23949145 intergenic not near genes chr3R_8_23945001 chr3R_23945001 RAL-776 1523 chr3R 24072086 24072106 chr3R 24072523 24072530 jockey 10 436 6.5 0.0 3.2 2.4 444 chr3R 24072086 intron 4EHP - chr3R 24072308 intron 4EHP - chr3R 24072530 intron 4EHP - chr3R_10_24070001 chr3R_24070001 RAL-776 1524 chr3R 24076915 24076948 chr3R 24078382 24078415 hobo 9 1465 3.5 2.5 3.0 2.2 1500 chr3R 24076915 intron 4EHP - chr3R 24077665 intron 4EHP - chr3R 24078415 intron 4EHP - chr3R_9_24075001 chr3R_24075001 RAL-776 1525 chr3R 24080125 24080142 chr3R 24080206 24080223 6 81 4.5 4.0 4.2 1.2 98 chr3R 24080125 intron 4EHP - chr3R 24080174 intron 4EHP - chr3R 24080223 intron 4EHP - chr3R_6_24080001 chr3R_24080001 RAL-776 1526 chr3R 24207216 24207243 chr3R 24212290 24212317 flea 5 5075 5.0 2.5 3.8 1.0 5101 chr3R 24207216 intron twin - chr3R 24209766 intron twin - chr3R 24212317 intron twin - chr3R_5_24205001 chr3R_24205001 RAL-776 1527 chr3R 24389170 24389203 chr3R 24389246 24389274 8 69 3.0 2.0 2.5 2.3 104 chr3R 24389170 intron CG5768 - chr3R 24389222 intron CG5768 - chr3R 24389274 intron CG5768 - chr3R_8_24385001 chr3R_24385001 RAL-776 1528 chr3R 21907534 21907535 chr3R 24389465 24389465 4 2481930 23.0 4.5 13.8 0.3 2481931 chr3R 21907534 intergenic CG6678 + chr3R 23148500 intergenic not near genes chr3R 24389465 intron CG5768 - chr3R_4_23145001 chr3R_23145001 RAL-776 1529 chr3R 24493277 24493299 chr3R 24493506 24493528 BS 6 229 2.5 4.0 3.2 1.4 251 chr3R 24493277 intergenic not near genes chr3R 24493402 intergenic not near genes chr3R 24493528 intergenic not near genes chr3R_6_24490001 chr3R_24490001 RAL-776 1530 chr3R 24502254 24502268 chr3R 24502329 24502338 7 73 2.0 5.0 3.5 1.6 84 chr3R 24502254 intergenic not near genes chr3R 24502296 intergenic not near genes chr3R 24502338 intergenic not near genes chr3R_7_24500001 chr3R_24500001 RAL-776 1531 chr3R 24670168 24670199 chr3R 24670252 24670283 5 84 0.0 4.5 2.2 1.6 115 chr3R 24670168 intron slo + chr3R 24670226 intron slo + chr3R 24670283 intron slo + chr3R_5_24670001 chr3R_24670001 RAL-776 1532 chr3R 24730093 24730121 chr3R 24732471 24732471 Doc 7 2374 2.5 0.0 1.2 3.2 2378 chr3R 24730093 intron tok + chr3R 24731282 intron tok + chr3R 24732471 intron tok + chr3R_7_24730001 chr3R_24730001 RAL-776 1533 chr3R 24809473 24809505 chr3R 24809561 24809586 10 87 2.0 1.5 1.8 3.6 113 chr3R 24809473 exon CG5807 - chr3R 24809530 intron CG5807 - chr3R 24809586 intron CG5807 - chr3R_10_24805001 chr3R_24805001 RAL-776 1534 chr3R 24811914 24811947 chr3R 24812008 24812039 12 93 2.0 4.5 3.2 2.9 125 chr3R 24811914 intron CG5807 - chr3R 24811976 intron CG5807 - chr3R 24812039 intron CG5807 - chr3R_12_24810001 chr3R_24810001 RAL-776 1535 chr3R 24815372 24815394 chr3R 24815475 24815507 8 112 0.0 5.5 2.8 2.1 135 chr3R 24815372 exon CG5808 - chr3R 24815440 exon CG5808 - chr3R 24815507 exon CG5808 - chr3R_8_24815001 chr3R_24815001 RAL-776 1536 chr3R 24854907 24854921 chr3R 24854984 24854999 4 78 0.5 4.5 2.5 1.1 92 chr3R 24854907 3` UTR HdacX - chr3R 24854953 3` UTR HdacX - chr3R 24854999 3` UTR HdacX - chr3R_4_24850001 chr3R_24850001 RAL-776 1537 chr3R 24893472 24893490 chr3R 24893552 24893570 4 80 2.5 4.5 3.5 0.9 98 chr3R 24893472 intron CG31121 - chr3R 24893521 intron CG31121 - chr3R 24893570 intron CG31121 - chr3R_4_24890001 chr3R_24890001 RAL-776 1538 chr3R 24952790 24952802 chr3R 24952866 24952886 5 82 0.5 3.5 2.0 1.7 96 chr3R 24952790 intergenic not near genes chr3R 24952838 intergenic not near genes chr3R 24952886 intergenic not near genes chr3R_5_24950001 chr3R_24950001 RAL-776 1539 chr3R 24994204 24994235 chr3R 24997168 24997199 5 2968 22.5 26.5 24.5 0.2 2995 chr3R 24994204 intron tnc + chr3R 24995702 intron tnc + chr3R 24997199 intron tnc + chr3R_5_24995001 chr3R_24995001 RAL-776 1540 chr3R 25004900 25004921 chr3R 25004983 25005004 7 83 0.0 4.5 2.2 2.2 104 chr3R 25004900 intron tnc + chr3R 25004952 intron tnc + chr3R 25005004 intron tnc + chr3R_7_25000001 chr3R_25000001 RAL-776 1541 chr3R 25077059 25077087 chr3R 25077387 25077415 9 326 3.5 4.0 3.8 1.9 356 chr3R 25077059 intergenic not near genes chr3R 25077237 intergenic not near genes chr3R 25077415 intergenic not near genes chr3R_9_25075001 chr3R_25075001 RAL-776 1542 chr3R 25082254 25082269 chr3R 25082331 25082345 5 77 1.5 3.5 2.5 1.4 91 chr3R 25082254 intergenic fd96Ca + chr3R 25082300 intergenic fd96Ca + chr3R 25082345 intergenic fd96Ca + chr3R_5_25080001 chr3R_25080001 RAL-776 1543 chr3R 25300680 25300703 chr3R 25300796 25300818 6 116 2.0 6.0 4.0 1.2 138 chr3R 25300680 intergenic CG13659 + chr3R 25300749 intergenic CG13659 + chr3R 25300818 intergenic CG13659 + chr3R_6_25300001 chr3R_25300001 RAL-776 1544 chr3R 25334427 25334459 chr3R 25334552 25334561 10 119 4.0 3.5 3.8 2.1 134 chr3R 25334427 intron CG10669 - chr3R 25334494 exon CG10669 - chr3R 25334561 exon CG10669 - chr3R_10_25330001 chr3R_25330001 RAL-776 1545 chr3R 25422061 25422092 chr3R 25422142 25422173 6 81 0.5 0.0 0.2 5.0 112 chr3R 25422061 intron Fur1 - chr3R 25422117 intron Fur1 - chr3R 25422173 intron Fur1 - chr3R_6_25420001 chr3R_25420001 RAL-776 1546 chr3R 25436499 25436514 chr3R 25436593 25436608 6 92 1.0 3.5 2.2 1.9 109 chr3R 25436499 intron Fur1 - chr3R 25436554 intron Fur1 - chr3R 25436608 intron Fur1 - chr3R_6_25435001 chr3R_25435001 RAL-776 1547 chr3R 25450755 25450767 chr3R 25451455 25451466 5 700 3.0 4.0 3.5 1.1 711 chr3R 25450755 intron Fur1 - chr3R 25451110 intron Fur1 - chr3R 25451466 intron Fur1 - chr3R_5_25450001 chr3R_25450001 RAL-776 1548 chr3R 25651038 25651069 chr3R 25651112 25651148 12 78 4.0 2.5 3.2 2.9 110 chr3R 25651038 intergenic mir-92b + chr3R 25651093 intergenic mir-92b + chr3R 25651148 intergenic mir-92b + chr3R_12_25650001 chr3R_25650001 RAL-776 1549 chr3R 25658769 25658792 chr3R 25658847 25658871 7 79 4.5 6.0 5.2 1.1 102 chr3R 25658769 intron Tnks - chr3R 25658820 intron Tnks - chr3R 25658871 intron Tnks - chr3R_7_25655001 chr3R_25655001 RAL-776 1550 chr3R 25709932 25709962 chr3R 25710014 25710044 22 81 1.5 9.0 5.2 3.5 112 chr3R 25709932 intron LpR2 - chr3R 25709988 intron LpR2 - chr3R 25710044 exon LpR2 - chr3R_22_25705001 chr3R_25705001 RAL-776 1551 chr3R 25709781 25709794 chr3R 25715773 25715783 7 5990 30.0 18.5 24.2 0.3 6002 chr3R 25709781 intron LpR2 - chr3R 25712782 intron LpR2 - chr3R 25715783 intron LpR2 - chr3R_7_25710001 chr3R_25710001 RAL-776 1552 chr3R 25813918 25813945 chr3R 25813994 25814021 13 75 3.0 4.5 3.8 2.7 103 chr3R 25813918 intergenic not near genes chr3R 25813970 intergenic not near genes chr3R 25814021 intergenic not near genes chr3R_13_25810001 chr3R_25810001 RAL-776 1553 chr3R 25822865 25822893 chr3R 25822945 25822973 4 80 1.0 2.0 1.5 1.6 108 chr3R 25822865 intergenic not near genes chr3R 25822919 intergenic not near genes chr3R 25822973 intergenic not near genes chr3R_4_25820001 chr3R_25820001 RAL-776 1554 chr3R 25832689 25832718 chr3R 25841871 25841900 roo 8 9182 5.5 3.5 4.5 1.5 9211 chr3R 25832689 exon alpha4GT2 + chr3R 25837294 intron alpha4GT2 + chr3R 25841900 exon alpha4GT2 + chr3R_8_25835001 chr3R_25835001 RAL-776 1555 chr3R 25849664 25849683 chr3R 25849759 25849778 5 95 2.5 0.0 1.2 2.3 114 chr3R 25849664 intergenic not near genes chr3R 25849721 intergenic not near genes chr3R 25849778 intergenic not near genes chr3R_5_25845001 chr3R_25845001 RAL-776 1556 chr3R 25956460 25956497 chr3R 25956546 25956582 12 85 1.0 0.5 0.8 6.7 122 chr3R 25956460 intergenic CCAP-R - chr3R 25956521 intergenic CCAP-R - chr3R 25956582 intergenic CCAP-R - chr3R_12_25955001 chr3R_25955001 RAL-776 1557 chr3R 25983707 25983719 chr3R 25983804 25983810 7 96 5.5 4.0 4.8 1.2 103 chr3R 25983707 exon Nf1 + chr3R 25983758 intron Nf1 + chr3R 25983810 intron Nf1 + chr3R_7_25980001 chr3R_25980001 RAL-776 1558 chr3R 26093847 26093867 chr3R 26093924 26093942 11 77 2.5 6.5 4.5 2.0 95 chr3R 26093847 intron dys - chr3R 26093894 intron dys - chr3R 26093942 intron dys - chr3R_11_26090001 chr3R_26090001 RAL-776 1559 chr3R 26144708 26144728 chr3R 26144785 26144795 6 76 13.5 18.5 16.0 0.4 87 chr3R 26144708 intergenic not near genes chr3R 26144752 intergenic not near genes chr3R 26144795 intergenic not near genes chr3R_6_26140001 chr3R_26140001 RAL-776 1560 chr3R 26153045 26153050 chr3R 26153130 26153135 4 85 7.5 5.0 6.2 0.6 90 chr3R 26153045 intergenic not near genes chr3R 26153090 intergenic not near genes chr3R 26153135 intergenic not near genes chr3R_4_26150001 chr3R_26150001 RAL-776 1561 chr3R 26210442 26210466 chr3R 26210646 26210666 5 202 0.5 2.0 1.2 2.3 224 chr3R 26210442 intergenic CR44320 + chr3R 26210554 intergenic CR44320 + chr3R 26210666 intergenic CR44320 + chr3R_5_26210001 chr3R_26210001 RAL-776 1562 chr3R 26226987 26227022 chr3R 26227094 26227126 14 105 3.5 5.5 4.5 2.5 139 chr3R 26226987 intergenic not near genes chr3R 26227056 intergenic not near genes chr3R 26227126 intergenic not near genes chr3R_14_26225001 chr3R_26225001 RAL-776 1563 chr3R 26263722 26263745 chr3R 26264105 26264125 4 382 0.0 2.0 1.0 2.0 403 chr3R 26263722 intron CG6154 + chr3R 26263924 intron CG6154 + chr3R 26264125 intron CG6154 + chr3R_4_26260001 chr3R_26260001 RAL-776 1564 chr3R 26292103 26292141 chr3R 26292183 26292221 5 79 2.0 2.5 2.2 1.6 118 chr3R 26292103 intergenic not near genes chr3R 26292162 intergenic not near genes chr3R 26292221 intergenic not near genes chr3R_5_26290001 chr3R_26290001 RAL-776 1565 chr3R 26339232 26339254 chr3R 26339326 26339349 10 94 0.5 4.0 2.2 3.1 117 chr3R 26339232 intron CG33970 + chr3R 26339290 intron CG33970 + chr3R 26339349 intron CG33970 + chr3R_10_26335001 chr3R_26335001 RAL-776 1566 chr3R 26376336 26376358 chr3R 26385496 26385513 roo 5 9158 2.5 0.5 1.5 2.0 9177 chr3R 26376336 intergenic not near genes chr3R 26380924 intergenic not near genes chr3R 26385513 intergenic not near genes chr3R_5_26380001 chr3R_26380001 RAL-776 1567 chr3R 26453243 26453269 chr3R 26453326 26453342 4 80 3.5 5.5 4.5 0.7 99 chr3R 26453243 intron CG5447 + chr3R 26453292 intron CG5447 + chr3R 26453342 intron CG5447 + chr3R_4_26450001 chr3R_26450001 RAL-776 1568 chr3R 26529345 26529371 chr3R 26529428 26529454 17 82 1.5 2.5 2.0 5.7 109 chr3R 26529345 intron plum - chr3R 26529400 intron plum - chr3R 26529454 intron plum - chr3R_17_26525001 chr3R_26525001 RAL-776 1569 chr3R 26541002 26541031 chr3R 26541081 26541110 7 79 0.5 3.5 2.0 2.3 108 chr3R 26541002 intron scrib + chr3R 26541056 intron scrib + chr3R 26541110 intron scrib + chr3R_7_26540001 chr3R_26540001 RAL-776 1570 chr3R 26558345 26558359 chr3R 26565642 26565654 Stalker4 4 7300 2.5 4.5 3.5 0.9 7309 chr3R 26558345 intron scrib + chr3R 26562000 intron scrib + chr3R 26565654 intron scrib + chr3R_4_26560001 chr3R_26560001 RAL-776 1571 chr3R 26656628 26656645 chr3R 26656726 26656755 4 108 3.5 0.0 1.8 1.4 127 chr3R 26656628 intron,exon beat-VII -,Tb + chr3R 26656692 intron,exon beat-VII -,Tb + chr3R 26656755 intron,exon beat-VII -,Tb + chr3R_4_26655001 chr3R_26655001 RAL-776 1572 chr3R 26661331 26661351 chr3R 26661416 26661441 8 87 1.5 3.5 2.5 2.3 110 chr3R 26661331 intron beat-VII - chr3R 26661386 intron beat-VII - chr3R 26661441 intron beat-VII - chr3R_8_26660001 chr3R_26660001 RAL-776 1573 chr3R 26704778 26704802 chr3R 26704875 26704894 10 94 2.0 7.0 4.5 1.8 116 chr3R 26704778 intron amon - chr3R 26704836 intron amon - chr3R 26704894 intron amon - chr3R_10_26700001 chr3R_26700001 RAL-776 1574 chr3R 26770246 26770274 chr3R 26770317 26770351 6 76 1.5 2.5 2.0 2.0 105 chr3R 26770246 intergenic CR45563 + chr3R 26770298 intergenic CR45563 + chr3R 26770351 intergenic not near genes chr3R_6_26770001 chr3R_26770001 RAL-776 1575 chr3R 26810580 26810586 chr3R 26811065 26811071 roo 4 485 1.0 12.0 6.5 0.5 491 chr3R 26810580 intron Tl + chr3R 26810826 intron Tl + chr3R 26811071 intron Tl + chr3R_4_26810001 chr3R_26810001 RAL-776 1576 chr3R 26831786 26831796 chr3R 26831930 26831958 6 157 1.0 2.5 1.8 2.1 172 chr3R 26831786 intron Tl + chr3R 26831872 intron Tl + chr3R 26831958 intron Tl + chr3R_6_26830001 chr3R_26830001 RAL-776 1577 chr3R 26852497 26852504 chr3R 26852584 26852591 4 87 0.0 3.0 1.5 1.6 94 chr3R 26852497 intron Lerp - chr3R 26852544 intron Lerp - chr3R 26852591 intron Lerp - chr3R_4_26850001 chr3R_26850001 RAL-776 1578 chr3R 27028725 27028753 chr3R 27028801 27028832 5 78 1.5 2.5 2.0 1.7 107 chr3R 27028725 intron RYa-R + chr3R 27028778 intron RYa-R + chr3R 27028832 intron RYa-R + chr3R_5_27025001 chr3R_27025001 RAL-776 1579 chr3R 27140521 27140548 chr3R 27148131 27148150 412 16 7609 3.0 6.5 4.8 2.8 7629 chr3R 27140521 intron CG6051 - chr3R 27144336 intron CG6051 - chr3R 27148150 intron CG6051 - chr3R_16_27140001 chr3R_27140001 RAL-776 1580 chr3R 27342791 27342817 chr3R 27351372 27351396 Tirant 9 8579 1.5 5.0 3.2 2.1 8605 chr3R 27342791 intron CG42534 + chr3R 27347094 intron CG42534 + chr3R 27351396 intron CG42534 + chr3R_9_27345001 chr3R_27345001 RAL-776 1581 chr3R 27355561 27355576 chr3R 27355629 27355655 7 76 0.0 3.0 1.5 2.8 94 chr3R 27355561 intron CG42534 + chr3R 27355608 intron CG42534 + chr3R 27355655 intron CG42534 + chr3R_7_27355001 chr3R_27355001 RAL-776 1582 chr3R 27371359 27371389 chr3R 27371433 27371469 10 79 3.0 2.5 2.8 2.6 110 chr3R 27371359 intergenic CG42534 + chr3R 27371414 intergenic CG42534 + chr3R 27371469 intergenic CG42534 + chr3R_10_27370001 chr3R_27370001 RAL-776 1583 chr3R 27467042 27467074 chr3R 27467141 27467173 11 99 3.0 6.5 4.8 1.9 131 chr3R 27467042 3` UTR CG13978 + chr3R 27467108 intergenic CG13978 + chr3R 27467173 intergenic CG13978 + chr3R_11_27465001 chr3R_27465001 RAL-776 1584 chr3R 27538466 27538477 chr3R 27538591 27538596 7 123 3.5 8.5 6.0 1.0 130 chr3R 27538466 5` UTR CR44288 + chr3R 27538531 5` UTR CR44288 + chr3R 27538596 5` UTR CR44288 + chr3R_7_27535001 chr3R_27535001 RAL-776 1585 chr3R 27538480 27538485 chr3R 27538577 27538610 4 114 3.0 4.5 3.8 0.8 130 chr3R 27538480 5` UTR CR44288 + chr3R 27538545 5` UTR CR44288 + chr3R 27538610 5` UTR CR44288 + chr3R_4_27535001 chr3R_27535001 RAL-776 1586 chr3R 27725567 27725603 chr3R 27731009 27731046 I-element 5 5442 1.5 1.5 1.5 2.0 5479 chr3R 27725567 intergenic not near genes chr3R 27728306 intergenic not near genes chr3R 27731046 intergenic not near genes chr3R_5_27725001 chr3R_27725001 RAL-776 1587 chr3R 27799939 27799962 chr3R 27800020 27800044 6 82 2.0 1.0 1.5 2.4 105 chr3R 27799939 intron CG34353 - chr3R 27799992 intron CG34353 - chr3R 27800044 intron CG34353 - chr3R_6_27795001 chr3R_27795001 RAL-776 1588 chr3R 27820033 27820049 chr3R 27820118 27820135 4 86 2.5 0.5 1.5 1.6 102 chr3R 27820033 intron CG34353 - chr3R 27820084 intron CG34353 - chr3R 27820135 intron CG34353 - chr3R_4_27820001 chr3R_27820001 RAL-776 1589 chr3R 27856760 27856792 chr3R 27858243 27858243 hopper2 12 1480 3.5 2.5 3.0 3.0 1483 chr3R 27856760 intron CG34353 - chr3R 27857502 intron CG34353 - chr3R 27858243 intron CG34353 - chr3R_12_27855001 chr3R_27855001 RAL-776 1590 chr3R 27862955 27862983 chr3R 27868257 27868287 Transpac 9 5302 2.5 2.0 2.2 2.8 5332 chr3R 27862955 intron CG34353 - chr3R 27865621 intron CG34353 - chr3R 27868287 intron CG34353 - chr3R_9_27865001 chr3R_27865001 RAL-776 1591 chr3R 27875700 27875733 chr3R 27882754 27882787 297 6 7055 2.5 3.0 2.8 1.6 7087 chr3R 27875700 intron CG34353 - chr3R 27879244 intron CG34353 - chr3R 27882787 intron CG34353 - chr3R_6_27875001 chr3R_27875001 RAL-776 1592 chr3R 27911250 27911257 chr3R 27911328 27911335 4 78 1.5 2.0 1.8 1.4 85 chr3R 27911250 intergenic not near genes chr3R 27911292 intergenic not near genes chr3R 27911335 intergenic not near genes chr3R_4_27910001 chr3R_27910001 RAL-776 1593 chr3R 28068491 28068530 chr3R 28073933 28073968 I-element 4 5434 1.5 3.5 2.5 1.1 5477 chr3R 28068491 intron CG34362 + chr3R 28071230 intron CG34362 + chr3R 28073968 intron CG34362 + chr3R_4_28070001 chr3R_28070001 RAL-776 1594 chr3R 28173669 28173703 chr3R 28181099 28181138 mdg1 5 7431 2.5 0.5 1.5 2.0 7469 chr3R 28173669 intron CG34354 + chr3R 28177404 intron CG34354 + chr3R 28181138 intron CG34354 + chr3R_5_28175001 chr3R_28175001 RAL-776 1595 chr3R 28253347 28253350 chr3R 28255847 28255860 jockey 5 2507 3.0 4.5 3.8 1.0 2513 chr3R 28253347 intergenic not near genes chr3R 28254604 intergenic not near genes chr3R 28255860 intergenic not near genes chr3R_5_28250001 chr3R_28250001 RAL-776 1596 chr3R 28253351 28253373 chr3R 28255842 28255876 jockey 9 2504 0.5 3.0 1.8 3.2 2525 chr3R 28253351 intergenic not near genes chr3R 28254614 intergenic not near genes chr3R 28255876 intergenic not near genes chr3R_9_28250001 chr3R_28250001 RAL-776 1597 chr3R 28275475 28275499 chr3R 28275748 28275771 5 273 0.5 3.5 2.0 1.7 296 chr3R 28275475 intergenic not near genes chr3R 28275623 intergenic not near genes chr3R 28275771 intergenic not near genes chr3R_5_28275001 chr3R_28275001 RAL-776 1598 chr3R 28286317 28286338 chr3R 28286404 28286426 5 87 2.5 4.0 3.2 1.2 109 chr3R 28286317 intergenic not near genes chr3R 28286372 intergenic not near genes chr3R 28286426 intergenic not near genes chr3R_5_28285001 chr3R_28285001 RAL-776 1599 chr3R 28368979 28369016 chr3R 28369057 28369099 8 83 2.0 0.0 1.0 4.0 120 chr3R 28368979 intergenic not near genes chr3R 28369039 intergenic not near genes chr3R 28369099 intergenic not near genes chr3R_8_28365001 chr3R_28365001 RAL-776 1600 chr3R 28393697 28393726 chr3R 28393797 28393826 6 100 3.5 0.5 2.0 2.0 129 chr3R 28393697 intergenic not near genes chr3R 28393762 intergenic not near genes chr3R 28393826 intergenic not near genes chr3R_6_28390001 chr3R_28390001 RAL-776 1601 chr3R 28552788 28552811 chr3R 28553141 28553164 7 353 2.0 2.0 2.0 2.3 376 chr3R 28552788 intergenic not near genes chr3R 28552976 intergenic not near genes chr3R 28553164 intergenic not near genes chr3R_7_28550001 chr3R_28550001 RAL-776 1602 chr3R 28571185 28571195 chr3R 28571279 28571288 5 93 5.0 7.0 6.0 0.7 103 chr3R 28571185 intergenic not near genes chr3R 28571236 intergenic not near genes chr3R 28571288 intergenic not near genes chr3R_5_28570001 chr3R_28570001 RAL-776 1603 chr3R 28597490 28597500 chr3R 28597567 28597577 5 77 9.5 1.5 5.5 0.8 87 chr3R 28597490 intergenic not near genes chr3R 28597534 intergenic not near genes chr3R 28597577 intergenic Noa36 - chr3R_5_28595001 chr3R_28595001 RAL-776 1604 chr3R 28597503 28597524 chr3R 28597566 28597601 9 74 6.5 1.5 4.0 1.8 98 chr3R 28597503 intergenic not near genes chr3R 28597552 intergenic not near genes chr3R 28597601 intergenic Noa36 - chr3R_9_28595001 chr3R_28595001 RAL-776 1605 chr3R 28625850 28625857 chr3R 28625939 28625946 7 89 3.5 4.5 4.0 1.4 96 chr3R 28625850 intron CG10011 - chr3R 28625898 intron CG10011 - chr3R 28625946 intron CG10011 - chr3R_7_28625001 chr3R_28625001 RAL-776 1606 chr3R 28631833 28631861 chr3R 28631916 28631942 8 81 5.0 3.5 4.2 1.5 109 chr3R 28631833 intron CG10011 - chr3R 28631888 intron CG10011 - chr3R 28631942 intron CG10011 - chr3R_8_28630001 chr3R_28630001 RAL-776 1607 chr3R 28643415 28643425 chr3R 28643573 28643588 5 162 6.5 6.0 6.2 0.7 173 chr3R 28643415 intergenic not near genes chr3R 28643502 intergenic not near genes chr3R 28643588 intergenic not near genes chr3R_5_28640001 chr3R_28640001 RAL-776 1608 chr3R 28643429 28643438 chr3R 28643571 28643572 7 154 4.0 5.5 4.8 1.2 143 chr3R 28643429 intergenic not near genes chr3R 28643500 intergenic not near genes chr3R 28643572 intergenic not near genes chr3R_7_28640001 chr3R_28640001 RAL-776 1609 chr3R 28742489 28742509 chr3R 28742565 28742585 5 76 2.0 1.0 1.5 2.0 96 chr3R 28742489 intron AstA-R2 - chr3R 28742537 intron AstA-R2 - chr3R 28742585 intron AstA-R2 - chr3R_5_28740001 chr3R_28740001 RAL-776 1610 chr3R 28758285 28758302 chr3R 28763902 28763919 roo 5 5617 2.5 0.0 1.2 2.3 5634 chr3R 28758285 intergenic aqrs - chr3R 28761102 intergenic not near genes chr3R 28763919 intergenic not near genes chr3R_5_28760001 chr3R_28760001 RAL-776 1611 chr3R 28792876 28792900 chr3R 28797971 28797995 jockey 7 5095 2.5 3.5 3.0 1.8 5119 chr3R 28792876 intergenic not near genes chr3R 28795436 intergenic not near genes chr3R 28797995 intergenic not near genes chr3R_7_28795001 chr3R_28795001 RAL-776 1612 chr3R 21907534 21907534 chr3R 28831801 28831803 63 6924266 23.0 21.0 22.0 2.7 6924269 chr3R 21907534 intergenic CG6678 + chr3R 25369668 intron Fur1 - chr3R 28831803 intron WASp - chr3R_63_25365001 chr3R_25365001 RAL-776 1613 chr3R 28947971 28947998 chr3R 28948083 28948108 9 111 4.0 2.0 3.0 2.2 137 chr3R 28947971 intron CG14521 - chr3R 28948040 intron CG14521 - chr3R 28948108 intron CG14521 - chr3R_9_28945001 chr3R_28945001 RAL-776 1614 chr3R 28960507 28960538 chr3R 28960592 28960622 5 84 0.5 0.5 0.5 3.3 115 chr3R 28960507 intron CG14521 - chr3R 28960564 intron CG14521 - chr3R 28960622 intron CG14521 - chr3R_5_28960001 chr3R_28960001 RAL-776 1615 chr3R 28971161 28971197 chr3R 28971242 28971278 6 81 0.5 0.5 0.5 4.0 117 chr3R 28971161 5` UTR CR45669 + chr3R 28971220 5` UTR CR45669 + chr3R 28971278 5` UTR CR45669 + chr3R_6_28970001 chr3R_28970001 RAL-776 1616 chr3R 28989919 28989934 chr3R 28990083 28990109 6 171 3.0 5.5 4.2 1.2 190 chr3R 28989919 intergenic not near genes chr3R 28990014 intergenic not near genes chr3R 28990109 intergenic not near genes chr3R_6_28990001 chr3R_28990001 RAL-776 1617 chr3R 29079381 29079407 chr3R 29080753 29080777 NOF 9 1371 2.0 3.5 2.8 2.4 1396 chr3R 29079381 intron CG11873 + chr3R 29080079 intron CG11873 + chr3R 29080777 intron CG11873 + chr3R_9_29080001 chr3R_29080001 RAL-776 1618 chr3R 29159119 29159154 chr3R 29159205 29159239 15 86 0.0 2.0 1.0 7.5 120 chr3R 29159119 intron CG11897 + chr3R 29159179 intron CG11897 + chr3R 29159239 intron CG11897 + chr3R_15_29155001 chr3R_29155001 RAL-776 1619 chr3R 29211196 29211212 chr3R 29211313 29211329 6 117 5.0 0.5 2.8 1.6 133 chr3R 29211196 intergenic not near genes chr3R 29211262 intergenic not near genes chr3R 29211329 intergenic not near genes chr3R_6_29210001 chr3R_29210001 RAL-776 1620 chr3R 29211222 29211228 chr3R 29211309 29211345 4 101 4.0 0.5 2.2 1.2 123 chr3R 29211222 intergenic not near genes chr3R 29211284 intergenic not near genes chr3R 29211345 intergenic not near genes chr3R_4_29210001 chr3R_29210001 RAL-776 1621 chr3R 29237268 29237282 chr3R 29239289 29239303 4 2021 5.0 6.5 5.8 0.6 2035 chr3R 29237268 exon CG11951 - chr3R 29238286 intron CG11951 - chr3R 29239303 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-776 1622 chr3R 29237522 29237525 chr3R 29239430 29239433 4 1908 17.0 6.5 11.8 0.3 1911 chr3R 29237522 exon CG11951 - chr3R 29238478 intron CG11951 - chr3R 29239433 exon CG31427 - chr3R_4_29235001 chr3R_29235001 RAL-776 1623 chr3R 29306169 29306200 chr3R 29306247 29306278 7 78 1.0 1.5 1.2 3.2 109 chr3R 29306169 intergenic not near genes chr3R 29306224 intergenic not near genes chr3R 29306278 intergenic not near genes chr3R_7_29305001 chr3R_29305001 RAL-776 1624 chr3R 29322818 29322825 chr3R 29322896 29322899 4 77 5.0 1.0 3.0 1.0 81 chr3R 29322818 intergenic not near genes chr3R 29322858 intergenic not near genes chr3R 29322899 intergenic not near genes chr3R_4_29320001 chr3R_29320001 RAL-776 1625 chr3R 29362155 29362189 chr3R 29362241 29362275 20 84 1.5 6.0 3.8 4.2 120 chr3R 29362155 intergenic not near genes chr3R 29362215 intergenic not near genes chr3R 29362275 intergenic not near genes chr3R_20_29360001 chr3R_29360001 RAL-776 1626 chr3R 29376232 29376260 chr3R 29376309 29376337 4 77 1.0 1.5 1.2 1.8 105 chr3R 29376232 intergenic not near genes chr3R 29376284 intergenic not near genes chr3R 29376337 intergenic not near genes chr3R_4_29375001 chr3R_29375001 RAL-776 1627 chr3R 29406630 29406640 chr3R 29407900 29407926 jockey 5 1282 1.5 4.5 3.0 1.2 1296 chr3R 29406630 intron Ptp99A + chr3R 29407278 intron Ptp99A + chr3R 29407926 intron Ptp99A + chr3R_5_29405001 chr3R_29405001 RAL-776 1628 chr3R 29430372 29430407 chr3R 29430478 29430513 14 106 3.5 3.5 3.5 3.1 141 chr3R 29430372 intron Ptp99A + chr3R 29430442 intron Ptp99A + chr3R 29430513 intron Ptp99A + chr3R_14_29430001 chr3R_29430001 RAL-776 1629 chr3R 29447163 29447175 chr3R 29447239 29447252 4 75 5.5 9.0 7.2 0.5 89 chr3R 29447163 intron Ptp99A + chr3R 29447208 intron Ptp99A + chr3R 29447252 intron Ptp99A + chr3R_4_29445001 chr3R_29445001 RAL-776 1630 chr3R 29539432 29539461 chr3R 29539508 29539537 11 75 2.5 0.0 1.2 5.0 105 chr3R 29539432 intergenic not near genes chr3R 29539484 intergenic not near genes chr3R 29539537 intergenic not near genes chr3R_11_29535001 chr3R_29535001 RAL-776 1631 chr3R 29563977 29563996 chr3R 29564053 29564072 4 76 0.0 5.5 2.8 1.1 95 chr3R 29563977 intron Dr + chr3R 29564024 intron Dr + chr3R 29564072 intron Dr + chr3R_4_29560001 chr3R_29560001 RAL-776 1632 chr3R 29576253 29576282 chr3R 29576343 29576363 13 88 0.0 3.0 1.5 5.2 110 chr3R 29576253 intergenic not near genes chr3R 29576308 intergenic not near genes chr3R 29576363 intergenic not near genes chr3R_13_29575001 chr3R_29575001 RAL-776 1633 chr3R 29576283 29576289 chr3R 29576338 29576338 6 72 0.0 2.0 1.0 3.0 55 chr3R 29576283 intergenic not near genes chr3R 29576310 intergenic not near genes chr3R 29576338 intergenic not near genes chr3R_6_29575001 chr3R_29575001 RAL-776 1634 chr3R 29606938 29606968 chr3R 29607016 29607046 12 78 2.5 4.5 3.5 2.7 108 chr3R 29606938 intron alph + chr3R 29606992 intron alph + chr3R 29607046 intron alph + chr3R_12_29605001 chr3R_29605001 RAL-776 1635 chr3R 29738267 29738295 chr3R 29739729 29739762 hobo 11 1466 2.0 3.0 2.5 3.1 1495 chr3R 29738267 intergenic CG1969 +,CG7598 + chr3R 29739014 intron CG1969 + chr3R 29739762 5` UTR CG1969 + chr3R_11_29735001 chr3R_29735001 RAL-776 1636 chr3R 29768477 29768600 chr3R 29768568 29768676 5 82 0.0 0.0 0.0 5.0 199 chr3R 29768477 intron kay + chr3R 29768576 intron kay + chr3R 29768676 intron kay + chr3R_5_29765001 chr3R_29765001 RAL-776 1637 chr3R 29773883 29773908 chr3R 29773974 29773999 8 91 4.0 0.5 2.2 2.5 116 chr3R 29773883 intron kay + chr3R 29773941 intron kay + chr3R 29773999 intron kay + chr3R_8_29770001 chr3R_29770001 RAL-776 1638 chr3R 29854830 29854855 chr3R 29854910 29854935 11 79 1.5 6.5 4.0 2.2 105 chr3R 29854830 3` UTR dgt1 - chr3R 29854882 exon dgt1 - chr3R 29854935 exon dgt1 - chr3R_11_29850001 chr3R_29850001 RAL-776 1639 chr3R 29881011 29881035 chr3R 29881097 29881121 6 86 1.5 4.5 3.0 1.5 110 chr3R 29881011 intron CG31038 + chr3R 29881066 intron CG31038 + chr3R 29881121 intron CG31038 + chr3R_6_29880001 chr3R_29880001 RAL-776 1640 chr3R 29882020 29882053 chr3R 29891177 29891210 roo 9 9153 3.0 3.0 3.0 2.2 9190 chr3R 29882020 intron CG31038 + chr3R 29886615 intron CG31038 + chr3R 29891210 intron CG31038 + chr3R_9_29885001 chr3R_29885001 RAL-776 1641 chr3R 29953445 29953475 chr3R 29953526 29953544 13 78 4.0 9.0 6.5 1.7 99 chr3R 29953445 exon TkR99D - chr3R 29953494 intron TkR99D - chr3R 29953544 intron TkR99D - chr3R_13_29950001 chr3R_29950001 RAL-776 1642 chr3R 29980817 29980836 chr3R 29980895 29980914 5 77 4.0 1.0 2.5 1.4 97 chr3R 29980817 intergenic not near genes chr3R 29980866 intergenic not near genes chr3R 29980914 intergenic not near genes chr3R_5_29980001 chr3R_29980001 RAL-776 1643 chr3R 30032164 30032176 chr3R 30032243 30032255 4 79 3.0 2.0 2.5 1.1 91 chr3R 30032164 intron Axn + chr3R 30032210 intron Axn + chr3R 30032255 intron Axn + chr3R_4_30030001 chr3R_30030001 RAL-776 1644 chr3R 30084848 30084876 chr3R 30086314 30086343 hobo 11 1465 1.5 3.0 2.2 3.4 1495 chr3R 30084848 intron sima + chr3R 30085596 intron sima + chr3R 30086343 intron sima + chr3R_11_30085001 chr3R_30085001 RAL-776 1645 chr3R 30099067 30099096 chr3R 30099147 30099176 13 78 3.0 3.0 3.0 3.2 109 chr3R 30099067 intron sima + chr3R 30099122 intron sima + chr3R 30099176 intron sima + chr3R_13_30095001 chr3R_30095001 RAL-776 1646 chr3R 30175697 30175728 chr3R 30175783 30175808 5 85 0.5 0.0 0.2 4.2 111 chr3R 30175697 intergenic CG1983 - chr3R 30175752 intergenic CG1983 - chr3R 30175808 3` UTR CG1983 - chr3R_5_30175001 chr3R_30175001 RAL-776 1647 chr3R 30210661 30210669 chr3R 30210741 30210748 6 80 0.0 5.5 2.8 1.6 87 chr3R 30210661 intergenic CecA1 +,Anp + chr3R 30210704 intergenic CecA1 +,Anp + chr3R 30210748 intergenic CecA1 +,Anp + chr3R_6_30210001 chr3R_30210001 RAL-776 1648 chr3R 30238763 30238794 chr3R 30239927 30239958 1360 5 1164 1.0 2.5 1.8 1.8 1195 chr3R 30238763 intergenic not near genes chr3R 30239360 intergenic not near genes chr3R 30239958 intergenic not near genes chr3R_5_30235001 chr3R_30235001 RAL-776 1649 chr3R 30252272 30252300 chr3R 30252400 30252404 4 122 6.5 6.0 6.2 0.6 132 chr3R 30252272 exon CG9682 + chr3R 30252338 exon CG9682 + chr3R 30252404 exon CG9682 + chr3R_4_30250001 chr3R_30250001 RAL-776 1650 chr3R 30317325 30317359 chr3R 30324917 30324949 roo 10 7590 3.5 3.5 3.5 2.2 7624 chr3R 30317325 intron hdc + chr3R 30321137 intron hdc + chr3R 30324949 intron hdc + chr3R_10_30320001 chr3R_30320001 RAL-776 1651 chr3R 30330500 30330525 chr3R 30330569 30330605 11 74 3.0 3.0 3.0 2.8 105 chr3R 30330500 intron hdc + chr3R 30330552 intron hdc + chr3R 30330605 intron hdc + chr3R_11_30330001 chr3R_30330001 RAL-776 1652 chr3R 30337840 30337862 chr3R 30337932 30337952 8 92 0.0 4.0 2.0 2.7 112 chr3R 30337840 intron hdc + chr3R 30337896 intron hdc + chr3R 30337952 intron hdc + chr3R_8_30335001 chr3R_30335001 RAL-776 1653 chr3R 30375539 30375572 chr3R 30383164 30383195 412 8 7624 5.0 4.0 4.5 1.5 7656 chr3R 30375539 intergenic not near genes chr3R 30379367 intergenic not near genes chr3R 30383195 intergenic not near genes chr3R_8_30375001 chr3R_30375001 RAL-776 1654 chr3R 30396222 30396244 chr3R 30404488 30404510 roo 7 8266 3.0 2.5 2.8 1.8 8288 chr3R 30396222 intergenic not near genes chr3R 30400366 intergenic not near genes chr3R 30404510 5` UTR CR45570 + chr3R_7_30400001 chr3R_30400001 RAL-776 1655 chr3R 30422953 30422974 chr3R 30423036 30423072 10 88 2.5 0.5 1.5 4.0 119 chr3R 30422953 5` UTR,5` UTR CG2217 -,CG42740 - chr3R 30423012 intergenic CG15535 -,CG2217 -,CG42740 - chr3R 30423072 3` UTR CG15535 - chr3R_10_30420001 chr3R_30420001 RAL-776 1656 chr3R 30456405 30456423 chr3R 30456486 30456504 5 81 0.5 2.5 1.5 2.0 99 chr3R 30456405 intergenic CG2224 - chr3R 30456454 3` UTR CG2224 - chr3R 30456504 3` UTR CG2224 - chr3R_5_30455001 chr3R_30455001 RAL-776 1657 chr3R 30461497 30461523 chr3R 30461613 30461640 18 116 1.5 6.0 3.8 3.8 143 chr3R 30461497 intron CDase + chr3R 30461568 intron CDase + chr3R 30461640 intron CDase + chr3R_18_30460001 chr3R_30460001 RAL-776 1658 chr3R 30480476 30480511 chr3R 30482944 30482979 jockey 7 2468 3.0 6.5 4.8 1.2 2503 chr3R 30480476 intron PH4alphaEFB + chr3R 30481728 intron PH4alphaEFB + chr3R 30482979 intron PH4alphaEFB + chr3R_7_30480001 chr3R_30480001 RAL-776 1659 chr3R 30566742 30566768 chr3R 30566836 30566863 7 93 5.0 4.5 4.8 1.2 121 chr3R 30566742 intron tmod + chr3R 30566802 intron tmod + chr3R 30566863 intron tmod + chr3R_7_30565001 chr3R_30565001 RAL-776 1660 chr3R 30627613 30627639 chr3R 30627682 30627719 7 76 0.5 5.0 2.8 1.8 106 chr3R 30627613 exon CG2267 - chr3R 30627666 exon CG2267 - chr3R 30627719 exon CG2267 - chr3R_7_30625001 chr3R_30625001 RAL-776 1661 chr3R 30679517 30679551 chr3R 30686986 30687020 blood 11 7467 6.0 2.5 4.2 2.1 7503 chr3R 30679517 intergenic not near genes chr3R 30683268 intergenic not near genes chr3R 30687020 intergenic not near genes chr3R_11_30680001 chr3R_30680001 RAL-776 1662 chr3R 30690171 30690184 chr3R 30690255 30690268 5 84 3.0 5.0 4.0 1.0 97 chr3R 30690171 intergenic Spn100A + chr3R 30690220 intergenic Spn100A + chr3R 30690268 intergenic Spn100A + chr3R_5_30690001 chr3R_30690001 RAL-776 1663 chr3R 30753352 30753360 chr3R 30753438 30753446 5 86 3.0 5.0 4.0 1.0 94 chr3R 30753352 intergenic not near genes chr3R 30753399 intergenic not near genes chr3R 30753446 intergenic not near genes chr3R_5_30750001 chr3R_30750001 RAL-776 1664 chr3R 30818812 30818843 chr3R 30820377 30820408 1360 12 1564 2.0 4.5 3.2 2.9 1596 chr3R 30818812 intron cindr + chr3R 30819610 intron cindr + chr3R 30820408 intron cindr + chr3R_12_30815001 chr3R_30815001 RAL-776 1665 chr3R 30821409 30821419 chr3R 30821495 30821506 4 87 0.0 0.0 0.0 4.0 97 chr3R 30821409 intron cindr + chr3R 30821458 intron cindr + chr3R 30821506 intron cindr + chr3R_4_30820001 chr3R_30820001 RAL-776 1666 chr3R 30850242 30850268 chr3R 30850334 30850360 7 92 2.0 2.0 2.0 2.3 118 chr3R 30850242 intergenic not near genes chr3R 30850301 intergenic not near genes chr3R 30850360 intergenic not near genes chr3R_7_30850001 chr3R_30850001 RAL-776 1667 chr3R 30888927 30888948 chr3R 30893455 30893475 4 4530 25.0 21.5 23.2 0.2 4548 chr3R 30888927 exon Sap-r - chr3R 30891201 intergenic not near genes chr3R 30893475 intergenic not near genes chr3R_4_30890001 chr3R_30890001 RAL-776 1668 chr3R 30900523 30900555 chr3R 30900602 30900634 12 77 4.0 4.0 4.0 2.4 111 chr3R 30900523 3` UTR Cyp4c3 + chr3R 30900578 3` UTR Cyp4c3 + chr3R 30900634 3` UTR Cyp4c3 + chr3R_12_30900001 chr3R_30900001 RAL-776 1669 chr3R 30921225 30921252 chr3R 30921305 30921332 8 80 4.0 6.0 5.0 1.3 107 chr3R 30921225 intron Ptx1 + chr3R 30921278 intron Ptx1 + chr3R 30921332 intron Ptx1 + chr3R_8_30920001 chr3R_30920001 RAL-776 1670 chr3R 30973133 30973154 chr3R 30973293 30973314 7 160 2.5 3.5 3.0 1.8 181 chr3R 30973133 intron 5-HT7 - chr3R 30973224 intron 5-HT7 - chr3R 30973314 intron 5-HT7 - chr3R_7_30970001 chr3R_30970001 RAL-776 1671 chr3R 30996639 30996666 chr3R 30996863 30996890 7 222 2.5 4.0 3.2 1.7 251 chr3R 30996639 intron 5-HT7 - chr3R 30996764 intron 5-HT7 - chr3R 30996890 intron 5-HT7 - chr3R_7_30995001 chr3R_30995001 RAL-776 1672 chr3R 31001255 31001269 chr3R 31001337 31001350 5 82 1.5 3.0 2.2 1.6 95 chr3R 31001255 intron 5-HT7 - chr3R 31001302 intron 5-HT7 - chr3R 31001350 intron 5-HT7 - chr3R_5_31000001 chr3R_31000001 RAL-776 1673 chr3R 31025345 31025356 chr3R 31025430 31025446 5 88 1.0 8.0 4.5 0.9 101 chr3R 31025345 intergenic not near genes chr3R 31025396 intergenic not near genes chr3R 31025446 intergenic not near genes chr3R_5_31025001 chr3R_31025001 RAL-776 1674 chr3R 31025736 31025746 chr3R 31025831 31025841 5 95 3.5 2.5 3.0 1.2 105 chr3R 31025736 intergenic not near genes chr3R 31025788 intergenic not near genes chr3R 31025841 intergenic not near genes chr3R_5_31025001 chr3R_31025001 RAL-776 1675 chr3R 31074234 31074262 chr3R 31081831 31081860 springer 9 7598 3.0 3.0 3.0 2.2 7626 chr3R 31074234 intron Sox100B + chr3R 31078047 intron Sox100B + chr3R 31081860 intron Sox100B + chr3R_9_31075001 chr3R_31075001 RAL-776 1676 chr3R 31090627 31090649 chr3R 31090712 31090734 5 85 0.0 2.0 1.0 2.5 107 chr3R 31090627 intergenic CG11317 - chr3R 31090680 intergenic CG11317 - chr3R 31090734 3` UTR CG11317 - chr3R_5_31090001 chr3R_31090001 RAL-776 1677 chr3R 31100480 31100512 chr3R 31101138 31101138 14 651 1.0 1.0 1.0 7.0 658 chr3R 31100480 exon CG15553 - chr3R 31100809 exon CG15553 - chr3R 31101138 5` UTR CG15553 - chr3R_14_31100001 chr3R_31100001 RAL-776 1678 chr3R 31150259 31150293 chr3R 31150339 31150346 10 74 2.5 2.5 2.5 2.9 87 chr3R 31150259 intron Gycbeta100B + chr3R 31150302 intron Gycbeta100B + chr3R 31150346 intron Gycbeta100B + chr3R_10_31150001 chr3R_31150001 RAL-776 1679 chr3R 31156485 31156514 chr3R 31156566 31156593 9 81 3.0 3.5 3.2 2.1 108 chr3R 31156485 intron Gycbeta100B + chr3R 31156539 intron Gycbeta100B + chr3R 31156593 intron Gycbeta100B + chr3R_9_31155001 chr3R_31155001 RAL-776 1680 chr3R 31172237 31172266 chr3R 31172317 31172347 10 77 2.0 3.0 2.5 2.9 110 chr3R 31172237 intron Gycbeta100B + chr3R 31172292 intron Gycbeta100B + chr3R 31172347 intron Gycbeta100B + chr3R_10_31170001 chr3R_31170001 RAL-776 1681 chr3R 31270804 31270810 chr3R 31270907 31270917 5 106 2.5 3.0 2.8 1.3 113 chr3R 31270804 intergenic not near genes chr3R 31270860 intergenic not near genes chr3R 31270917 intergenic not near genes chr3R_5_31270001 chr3R_31270001 RAL-776 1682 chr3R 31279396 31279403 chr3R 31285563 31285585 diver 4 6176 1.5 3.5 2.5 1.1 6189 chr3R 31279396 intergenic not near genes chr3R 31282490 intergenic not near genes chr3R 31285585 intergenic not near genes chr3R_4_31280001 chr3R_31280001 RAL-776 1683 chr3R 31413088 31413110 chr3R 31418288 31418310 copia 6 5200 1.5 3.5 2.5 1.7 5222 chr3R 31413088 intron Gprk2 + chr3R 31415699 intron Gprk2 + chr3R 31418310 intron Gprk2 + chr3R_6_31415001 chr3R_31415001 RAL-776 1684 chr3R 31426878 31426908 chr3R 31426970 31426991 9 91 1.0 1.0 1.0 4.5 113 chr3R 31426878 intron Gprk2 + chr3R 31426934 intron Gprk2 + chr3R 31426991 intron Gprk2 + chr3R_9_31425001 chr3R_31425001 RAL-776 1685 chr3R 31443991 31444014 chr3R 31444120 31444140 13 134 4.0 4.5 4.2 2.5 149 chr3R 31443991 intron Gprk2 + chr3R 31444066 intron Gprk2 + chr3R 31444140 intron Gprk2 + chr3R_13_31440001 chr3R_31440001 RAL-776 1686 chr3R 31460364 31460378 chr3R 31463099 31463113 5 2735 2.0 3.0 2.5 1.4 2749 chr3R 31460364 intron CG11334 - chr3R 31461738 intron CG11334 - chr3R 31463113 intergenic CG11334 -,CG11333 + chr3R_5_31460001 chr3R_31460001 RAL-776 1687 chr3R 31482370 31482400 chr3R 31482449 31482471 9 76 3.0 0.5 1.8 3.2 101 chr3R 31482370 intergenic not near genes chr3R 31482420 intergenic not near genes chr3R 31482471 intergenic not near genes chr3R_9_31480001 chr3R_31480001 RAL-776 1688 chr3R 31530822 31530837 chr3R 31531145 31531148 5 320 6.0 6.5 6.2 0.7 326 chr3R 31530822 intergenic not near genes chr3R 31530985 intergenic not near genes chr3R 31531148 intergenic not near genes chr3R_5_31530001 chr3R_31530001 RAL-776 1689 chr3R 31530838 31530843 chr3R 31531143 31531169 7 316 5.0 5.0 5.0 1.2 331 chr3R 31530838 intergenic not near genes chr3R 31531004 intergenic not near genes chr3R 31531169 intergenic not near genes chr3R_7_31530001 chr3R_31530001 RAL-776 1690 chr3R 31691531 31691562 chr3R 31696297 31696328 Doc 14 4760 3.0 5.5 4.2 2.7 4797 chr3R 31691531 intergenic not near genes chr3R 31693930 intergenic not near genes chr3R 31696328 intergenic not near genes chr3R_14_31690001 chr3R_31690001 RAL-776 1691 chr3R 31905335 31905352 chr3R 31905405 31905428 4 68 1.5 2.5 2.0 1.3 93 chr3R 31905335 intron heph - chr3R 31905382 intron heph - chr3R 31905428 intron heph - chr3R_4_31905001 chr3R_31905001 RAL-776 1692 chr3R 31927412 31927424 chr3R 31927521 31927530 7 108 4.5 5.0 4.8 1.2 118 chr3R 31927412 intron heph - chr3R 31927471 intron heph - chr3R 31927530 intron heph - chr3R_7_31925001 chr3R_31925001 RAL-776 1693 chr3R 31948467 31948493 chr3R 31948551 31948577 7 83 2.0 4.0 3.0 1.8 110 chr3R 31948467 intron heph - chr3R 31948522 intron heph - chr3R 31948577 intron heph - chr3R_7_31945001 chr3R_31945001 RAL-776 1694 chr3R 31953104 31953122 chr3R 31953174 31953210 5 84 4.0 2.0 3.0 1.2 106 chr3R 31953104 intron heph - chr3R 31953157 intron heph - chr3R 31953210 intron heph - chr3R_5_31950001 chr3R_31950001 RAL-776 1695 chr3R 31997991 31998015 chr3R 32005461 32005485 blood 7 7469 3.5 4.5 4.0 1.4 7494 chr3R 31997991 intron heph - chr3R 32001738 intron heph - chr3R 32005485 intron heph - chr3R_7_32000001 chr3R_32000001 RAL-776 1696 chr3R 32022322 32022342 chr3R 32022424 32022444 10 102 5.5 5.0 5.2 1.6 122 chr3R 32022322 5` UTR CR45557 + chr3R 32022383 5` UTR CR45557 + chr3R 32022444 5` UTR CR45557 + chr3R_10_32020001 chr3R_32020001 RAL-776 1697 chr4 76496 76510 chr4 81939 81952 I-element 5 5442 2.0 1.5 1.8 1.8 5456 chr4 76496 intron pan + chr4 79224 intron pan + chr4 81952 intron pan + chr4_5_75001 chr4_75001 RAL-776 1698 chr4 671614 671629 chr4 680190 680212 Tirant 6 8580 4.0 3.0 3.5 1.3 8598 chr4 671614 intron CG11360 + chr4 675913 intron CG11360 + chr4 680212 intron CG11360 + chr4_6_675001 chr4_675001 RAL-776 1699 chr4 852910 852930 chr4 853272 853294 6 364 1.0 4.5 2.8 1.6 384 chr4 852910 intergenic not near genes chr4 853102 intergenic not near genes chr4 853294 intergenic CG11148 - chr4_6_850001 chr4_850001 RAL-776 1700 chrX 550776 550787 chrX 551355 551366 9 579 2.5 5.5 4.0 1.8 590 chrX 550776 intron Appl + chrX 551071 intron Appl + chrX 551366 intron Appl + chrX_9_550001 chrX_550001 RAL-776 1701 chrX 551428 551454 chrX 558990 559016 412 10 7559 3.5 5.0 4.2 1.9 7588 chrX 551428 intron Appl + chrX 555222 intron Appl + chrX 559016 intron Appl + chrX_10_555001 chrX_555001 RAL-776 1702 chrX 802307 802320 chrX 802363 802395 5 62 4.0 3.0 3.5 1.1 88 chrX 802307 exon CG13359 - chrX 802351 exon CG13359 - chrX 802395 exon CG13359 - chrX_5_800001 chrX_800001 RAL-776 1703 chrX 827600 827631 chrX 835392 835423 roo 6 7792 4.0 3.0 3.5 1.3 7823 chrX 827600 intron CG43867 - chrX 831512 intron CG43867 - chrX 835423 intron CG43867 - chrX_6_830001 chrX_830001 RAL-776 1704 chrX 906703 906733 chrX 908492 908522 S-element 15 1786 2.5 5.0 3.8 3.1 1819 chrX 906703 intron CG43867 - chrX 907612 intron CG43867 - chrX 908522 intron CG43867 - chrX_15_905001 chrX_905001 RAL-776 1705 chrX 962009 962039 chrX 962475 962503 11 466 2.0 1.0 1.5 4.4 494 chrX 962009 intergenic not near genes chrX 962256 intergenic not near genes chrX 962503 intergenic not near genes chrX_11_960001 chrX_960001 RAL-776 1706 chrX 1004789 1004827 chrX 1004870 1004908 5 81 1.0 0.5 0.8 2.8 119 chrX 1004789 intergenic not near genes chrX 1004848 intergenic not near genes chrX 1004908 intergenic not near genes chrX_5_1000001 chrX_1000001 RAL-776 1707 chrX 1205543 1205556 chrX 1205610 1205637 5 75 2.0 3.5 2.8 1.3 94 chrX 1205543 intergenic CG11381 + chrX 1205590 intergenic CG11381 + chrX 1205637 intergenic CG11381 + chrX_5_1205001 chrX_1205001 RAL-776 1708 chrX 1253731 1253752 chrX 1253813 1253834 6 80 5.0 4.0 4.5 1.1 103 chrX 1253731 intron Atf3 - chrX 1253782 intron Atf3 - chrX 1253834 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-776 1709 chrX 1253753 1253761 chrX 1253811 1253843 6 78 4.0 3.5 3.8 1.2 90 chrX 1253753 intron Atf3 - chrX 1253798 intron Atf3 - chrX 1253843 intron Atf3 - chrX_6_1250001 chrX_1250001 RAL-776 1710 chrX 1357778 1357808 chrX 1367948 1367978 Doc 7 10169 3.0 4.5 3.8 1.5 10200 chrX 1357778 intergenic png - chrX 1362878 intergenic not near genes chrX 1367978 intergenic not near genes chrX_7_1360001 chrX_1360001 RAL-776 1711 chrX 1402263 1402291 chrX 1402621 1402649 10 358 2.5 1.0 1.8 3.6 386 chrX 1402263 intergenic not near genes chrX 1402456 intergenic not near genes chrX 1402649 intergenic not near genes chrX_10_1400001 chrX_1400001 RAL-776 1712 chrX 1428594 1428626 chrX 1428680 1428712 7 86 3.0 1.5 2.2 2.2 118 chrX 1428594 intron futsch + chrX 1428653 intron futsch + chrX 1428712 intron futsch + chrX_7_1425001 chrX_1425001 RAL-776 1713 chrX 1518040 1518067 chrX 1523441 1523469 jockey 14 5401 4.5 6.5 5.5 2.2 5429 chrX 1518040 intergenic inc + chrX 1520754 intergenic not near genes chrX 1523469 intergenic not near genes chrX_14_1520001 chrX_1520001 RAL-776 1714 chrX 1554506 1554544 chrX 1554663 1554701 7 149 16.0 13.5 14.8 0.4 195 chrX 1554506 exon Mur2B - chrX 1554604 intron Mur2B - chrX 1554701 exon Mur2B - chrX_7_1550001 chrX_1550001 RAL-776 1715 chrX 1555396 1555417 chrX 1555491 1555512 6 93 28.0 20.5 24.2 0.2 116 chrX 1555396 exon Mur2B - chrX 1555454 exon Mur2B - chrX 1555512 exon Mur2B - chrX_6_1555001 chrX_1555001 RAL-776 1716 chrX 1560655 1560685 chrX 1560747 1560778 5 89 0.5 1.5 1.0 2.5 123 chrX 1560655 intron Mur2B - chrX 1560716 intron Mur2B - chrX 1560778 intron Mur2B - chrX_5_1560001 chrX_1560001 RAL-776 1717 chrX 1627976 1627998 chrX 1635444 1635456 gtwin 11 7466 2.5 4.5 3.5 2.4 7480 chrX 1627976 intron,intron Mur2B -,br + chrX 1631716 intron,intron Mur2B -,br + chrX 1635456 intron,intron Mur2B -,br + chrX_11_1630001 chrX_1630001 RAL-776 1718 chrX 1954890 1954917 chrX 1962826 1962836 Stalker2 4 7928 0.5 2.0 1.2 1.8 7946 chrX 1954890 intron Hr4 + chrX 1958863 intron Hr4 + chrX 1962836 intron Hr4 + chrX_4_1955001 chrX_1955001 RAL-776 1719 chrX 2023960 2023978 chrX 2024083 2024101 4 123 16.5 9.0 12.8 0.3 141 chrX 2023960 3` UTR,3` UTR east +,Actn - chrX 2024030 3` UTR,3` UTR east +,Actn - chrX 2024101 3` UTR,3` UTR east +,Actn - chrX_4_2020001 chrX_2020001 RAL-776 1720 chrX 2020869 2020870 chrX 2025588 2025614 5 4724 24.5 19.0 21.8 0.2 4745 chrX 2020869 exon east + chrX 2023242 3` UTR east + chrX 2025614 exon Actn - chrX_5_2020001 chrX_2020001 RAL-776 1721 chrX 2123911 2123931 chrX 2123989 2123991 12 75 5.5 0.5 3.0 3.0 80 chrX 2123911 intergenic not near genes chrX 2123951 intergenic not near genes chrX 2123991 intergenic not near genes chrX_12_2120001 chrX_2120001 RAL-776 1722 chrX 2397924 2397929 chrX 2398018 2398022 5 94 2.0 0.5 1.2 2.3 98 chrX 2397924 intergenic not near genes chrX 2397973 intergenic not near genes chrX 2398022 intergenic not near genes chrX_5_2395001 chrX_2395001 RAL-776 1723 chrX 2399846 2399863 chrX 2408199 2408216 roo 5 8352 4.0 7.0 5.5 0.8 8370 chrX 2399846 intergenic not near genes chrX 2404031 intergenic not near genes chrX 2408216 intergenic not near genes chrX_5_2400001 chrX_2400001 RAL-776 1724 chrX 2454480 2454491 chrX 2454560 2454564 4 78 2.0 0.0 1.0 2.0 84 chrX 2454480 intron boi - chrX 2454522 intron boi - chrX 2454564 intron boi - chrX_4_2450001 chrX_2450001 RAL-776 1725 chrX 2578810 2578843 chrX 2578901 2578934 11 91 3.0 3.0 3.0 2.8 124 chrX 2578810 intergenic Pdfr +,Vha36-3 - chrX 2578872 intergenic Vha36-3 -,Pdfr + chrX 2578934 intergenic Vha36-3 -,Pdfr + chrX_11_2575001 chrX_2575001 RAL-776 1726 chrX 2844898 2844931 chrX 2852308 2852341 mdg1 4 7404 1.0 1.5 1.2 1.8 7443 chrX 2844898 intron kirre + chrX 2848620 intron kirre + chrX 2852341 intron kirre + chrX_4_2845001 chrX_2845001 RAL-776 1727 chrX 3038741 3038766 chrX 3038829 3038854 10 86 1.5 3.5 2.5 2.9 113 chrX 3038741 intron kirre + chrX 3038798 intron kirre + chrX 3038854 intron kirre + chrX_10_3035001 chrX_3035001 RAL-776 1728 chrX 3058020 3058046 chrX 3058261 3058287 pogo 7 241 3.0 1.0 2.0 2.3 267 chrX 3058020 intron kirre + chrX 3058154 intron kirre + chrX 3058287 intron kirre + chrX_7_3055001 chrX_3055001 RAL-776 1729 chrX 3083970 3083983 chrX 3084153 3084163 6 181 4.5 1.5 3.0 1.5 193 chrX 3083970 intron kirre + chrX 3084066 intron kirre + chrX 3084163 intron kirre + chrX_6_3080001 chrX_3080001 RAL-776 1730 chrX 3109444 3109476 chrX 3109521 3109553 9 77 2.0 3.5 2.8 2.4 109 chrX 3109444 intron kirre + chrX 3109498 intron kirre + chrX 3109553 intron kirre + chrX_9_3105001 chrX_3105001 RAL-776 1731 chrX 3306348 3306353 chrX 3306428 3306435 4 81 3.0 0.0 1.5 1.6 87 chrX 3306348 intron dnc + chrX 3306392 intron dnc + chrX 3306435 intron dnc + chrX_4_3305001 chrX_3305001 RAL-776 1732 chrX 3322643 3322659 chrX 3322717 3322735 6 75 0.0 1.5 0.8 3.3 92 chrX 3322643 intron,intron dnc +,CR44886 - chrX 3322689 intron,intron dnc +,CR44886 - chrX 3322735 intron,intron dnc +,CR44886 - chrX_6_3320001 chrX_3320001 RAL-776 1733 chrX 3408994 3409012 chrX 3409061 3409089 4 74 0.0 3.0 1.5 1.6 95 chrX 3408994 intron,intron CR44999 +,CG12535 - chrX 3409042 intron,intron CR44999 +,CG12535 - chrX 3409089 intron,intron CR44999 +,CG12535 - chrX_4_3405001 chrX_3405001 RAL-776 1734 chrX 3437432 3437452 chrX 3437508 3437527 7 76 2.5 1.0 1.8 2.5 95 chrX 3437432 intron,intron CR44999 +,CG12535 - chrX 3437480 intron,intron CR44999 +,CG12535 - chrX 3437527 intron,intron CR44999 +,CG12535 - chrX_7_3435001 chrX_3435001 RAL-776 1735 chrX 3493089 3493119 chrX 3502248 3502278 roo 5 9159 1.0 1.0 1.0 2.5 9189 chrX 3493089 intron,intron CR44999 +,Gas8 - chrX 3497684 intron,intron CR44999 +,Gas8 - chrX 3502278 intron,intron CR44999 +,Gas8 - chrX_5_3495001 chrX_3495001 RAL-776 1736 chrX 3513773 3513786 chrX 3513856 3513869 8 83 1.5 1.5 1.5 3.2 96 chrX 3513773 intron,intron CR44999 +,CG32791 - chrX 3513821 intron,intron CR44999 +,CG32791 - chrX 3513869 intron,intron CR44999 +,CG32791 - chrX_8_3510001 chrX_3510001 RAL-776 1737 chrX 3597548 3597581 chrX 3619716 3619749 roo 11 22168 3.5 1.0 2.2 3.4 22201 chrX 3597548 intron AstA-R1 + chrX 3608648 intron AstA-R1 + chrX 3619749 intron AstA-R1 + chrX_11_3605001 chrX_3605001 RAL-776 1738 chrX 3737430 3737455 chrX 3737502 3737521 11 72 2.5 2.0 2.2 3.4 91 chrX 3737430 intron tlk + chrX 3737476 intron tlk + chrX 3737521 intron tlk + chrX_11_3735001 chrX_3735001 RAL-776 1739 chrX 3741644 3741661 chrX 3742126 3742143 4 482 0.5 6.5 3.5 0.9 499 chrX 3741644 intron tlk + chrX 3741894 intron tlk + chrX 3742143 intron tlk + chrX_4_3740001 chrX_3740001 RAL-776 1740 chrX 3881269 3881301 chrX 3881408 3881440 8 139 1.0 2.5 1.8 2.9 171 chrX 3881269 intron VhaAC39-1 + chrX 3881354 intron VhaAC39-1 + chrX 3881440 intron VhaAC39-1 + chrX_8_3880001 chrX_3880001 RAL-776 1741 chrX 3986868 3986893 chrX 3994501 3994526 412 7 7632 2.0 2.0 2.0 2.3 7658 chrX 3986868 intergenic not near genes chrX 3990697 intergenic not near genes chrX 3994526 intergenic not near genes chrX_7_3990001 chrX_3990001 RAL-776 1742 chrX 4048502 4048525 chrX 4048578 4048601 4 76 1.0 2.5 1.8 1.4 99 chrX 4048502 3` UTR CR45482 - chrX 4048552 3` UTR CR45482 - chrX 4048601 3` UTR CR45482 - chrX_4_4045001 chrX_4045001 RAL-776 1743 chrX 4101865 4101899 chrX 4101944 4101976 11 80 0.5 2.0 1.2 5.0 111 chrX 4101865 exon CG15375 + chrX 4101920 exon CG15375 + chrX 4101976 exon CG15375 + chrX_11_4100001 chrX_4100001 RAL-776 1744 chrX 4157891 4157925 chrX 4164926 4164960 297 7 7032 3.5 0.5 2.0 2.3 7069 chrX 4157891 intron Fas2 - chrX 4161426 intron Fas2 - chrX 4164960 intron Fas2 - chrX_7_4160001 chrX_4160001 RAL-776 1745 chrX 4324404 4324414 chrX 4324479 4324491 4 76 1.5 2.5 2.0 1.3 87 chrX 4324404 intron norpA + chrX 4324448 intron norpA + chrX 4324491 intron norpA + chrX_4_4320001 chrX_4320001 RAL-776 1746 chrX 4417779 4417789 chrX 4417855 4417865 5 75 0.5 1.0 0.8 2.8 86 chrX 4417779 intron,intron CR32773 -,bi + chrX 4417822 intron,intron CR32773 -,bi + chrX 4417865 intron,intron CR32773 -,bi + chrX_5_4415001 chrX_4415001 RAL-776 1747 chrX 4515834 4515857 chrX 4515912 4515935 13 78 1.5 1.5 1.5 5.2 101 chrX 4515834 intron CR32773 - chrX 4515884 intron CR32773 - chrX 4515935 intron CR32773 - chrX_13_4515001 chrX_4515001 RAL-776 1748 chrX 4525346 4525361 chrX 4525428 4525457 6 93 1.5 2.0 1.8 2.1 111 chrX 4525346 intron CR32773 - chrX 4525402 intron CR32773 - chrX 4525457 intron CR32773 - chrX_6_4525001 chrX_4525001 RAL-776 1749 chrX 4731814 4731830 chrX 4736907 4736922 jockey 10 5090 6.0 3.0 4.5 1.8 5108 chrX 4731814 intergenic not near genes chrX 4734368 intergenic not near genes chrX 4736922 intergenic not near genes chrX_10_4730001 chrX_4730001 RAL-776 1750 chrX 4763268 4763284 chrX 4763756 4763772 Stalker4 5 488 3.0 2.5 2.8 1.3 504 chrX 4763268 intergenic not near genes chrX 4763520 intergenic not near genes chrX 4763772 intergenic not near genes chrX_5_4760001 chrX_4760001 RAL-776 1751 chrX 4792379 4792407 chrX 4792812 4792840 jockey 8 433 1.0 5.0 3.0 2.0 461 chrX 4792379 intergenic not near genes chrX 4792610 intergenic not near genes chrX 4792840 intergenic not near genes chrX_8_4790001 chrX_4790001 RAL-776 1752 chrX 4827994 4827998 chrX 4835338 4835369 Stalker4 4 7364 1.0 3.0 2.0 1.3 7375 chrX 4827994 intergenic not near genes chrX 4831682 intergenic not near genes chrX 4835369 intergenic not near genes chrX_4_4830001 chrX_4830001 RAL-776 1753 chrX 4931349 4931381 chrX 4931441 4931474 12 91 10.5 5.0 7.8 1.4 125 chrX 4931349 intron CG44774 - chrX 4931412 intron CG44774 - chrX 4931474 intron CG44774 - chrX_12_4930001 chrX_4930001 RAL-776 1754 chrX 4943902 4943929 chrX 4943999 4944025 14 97 2.0 2.5 2.2 4.4 123 chrX 4943902 intron Ptp4E + chrX 4943964 intron Ptp4E + chrX 4944025 intron Ptp4E + chrX_14_4940001 chrX_4940001 RAL-776 1755 chrX 4965555 4965579 chrX 4965635 4965659 10 80 2.0 3.0 2.5 2.9 104 chrX 4965555 intron CR44833 - chrX 4965607 intron CR44833 - chrX 4965659 intron CR44833 - chrX_10_4965001 chrX_4965001 RAL-776 1756 chrX 4990043 4990067 chrX 4997257 4997281 roo 8 7214 1.5 0.5 1.0 4.0 7238 chrX 4990043 intron CR44833 - chrX 4993662 intron CR44833 - chrX 4997281 intron CR44833 - chrX_8_4990001 chrX_4990001 RAL-776 1757 chrX 5096286 5096306 chrX 5103851 5103871 springer 6 7565 0.5 3.5 2.0 2.0 7585 chrX 5096286 intron,intron CG15465 +,rg + chrX 5100078 intron,intron CG15465 +,rg + chrX 5103871 intron,intron CG15465 +,rg + chrX_6_5100001 chrX_5100001 RAL-776 1758 chrX 5147857 5147880 chrX 5147962 5147982 5 105 5.0 1.0 3.0 1.2 125 chrX 5147857 intron,intron CG15465 +,rg + chrX 5147920 intron,intron CG15465 +,rg + chrX 5147982 intron,intron CG15465 +,rg + chrX_5_5145001 chrX_5145001 RAL-776 1759 chrX 5220390 5220410 chrX 5220631 5220651 7 241 0.5 3.5 2.0 2.3 261 chrX 5220390 intron,intron CG15465 +,rg + chrX 5220520 intron,intron CG15465 +,rg + chrX 5220651 intron,intron CG15465 +,rg + chrX_7_5220001 chrX_5220001 RAL-776 1760 chrX 5349274 5349309 chrX 5349351 5349386 8 77 1.0 1.5 1.2 3.6 112 chrX 5349274 intron SK + chrX 5349330 intron SK + chrX 5349386 intron SK + chrX_8_5345001 chrX_5345001 RAL-776 1761 chrX 5441994 5442018 chrX 5442099 5442126 8 107 1.5 3.5 2.5 2.3 132 chrX 5441994 intergenic not near genes chrX 5442060 intergenic not near genes chrX 5442126 intergenic not near genes chrX_8_5440001 chrX_5440001 RAL-776 1762 chrX 5524853 5524868 chrX 5528716 5528731 412 4 3863 3.5 1.0 2.2 1.2 3878 chrX 5524853 intergenic snoRNA:Psi28S-3342 - chrX 5526792 intergenic not near genes chrX 5528731 intergenic Vsx2 - chrX_4_5525001 chrX_5525001 RAL-776 1763 chrX 5615018 5615293 chrX 5615401 5615455 4 276 0.0 0.5 0.2 3.3 437 chrX 5615018 exon CG34434 - chrX 5615236 exon CG34434 - chrX 5615455 exon CG34434 - chrX_4_5615001 chrX_5615001 RAL-776 1764 chrX 5634571 5634598 chrX 5634647 5634681 10 81 6.5 0.5 3.5 2.2 110 chrX 5634571 intron CG42492 - chrX 5634626 intron CG42492 - chrX 5634681 intron CG42492 - chrX_10_5630001 chrX_5630001 RAL-776 1765 chrX 5883823 5883839 chrX 5884064 5884072 pogo 4 239 2.5 0.5 1.5 1.6 249 chrX 5883823 intron CR45668 - chrX 5883948 intron CR45668 - chrX 5884072 intron CR45668 - chrX_4_5880001 chrX_5880001 RAL-776 1766 chrX 5884161 5884192 chrX 5884401 5884433 pogo 6 240 2.5 0.5 1.5 2.4 272 chrX 5884161 intron CR45668 - chrX 5884297 intron CR45668 - chrX 5884433 intron CR45668 - chrX_6_5880001 chrX_5880001 RAL-776 1767 chrX 5890363 5890387 chrX 5890439 5890463 6 74 0.5 3.0 1.8 2.1 100 chrX 5890363 intron CR45668 - chrX 5890413 intron CR45668 - chrX 5890463 intron CR45668 - chrX_6_5890001 chrX_5890001 RAL-776 1768 chrX 6003289 6003309 chrX 6003366 6003390 9 81 0.5 2.0 1.2 4.1 101 chrX 6003289 intron CR44498 + chrX 6003340 intron CR44498 + chrX 6003390 intron CR44498 + chrX_9_6000001 chrX_6000001 RAL-776 1769 chrX 6171586 6171610 chrX 6179019 6179043 Quasimodo 8 7433 2.0 3.0 2.5 2.3 7457 chrX 6171586 intron Ca-alpha1T - chrX 6175314 intron Ca-alpha1T - chrX 6179043 intron Ca-alpha1T - chrX_8_6175001 chrX_6175001 RAL-776 1770 chrX 6263841 6263862 chrX 6263912 6263942 9 80 1.0 1.0 1.0 4.5 101 chrX 6263841 intron schlank - chrX 6263892 intron schlank - chrX 6263942 intron schlank - chrX_9_6260001 chrX_6260001 RAL-776 1771 chrX 6306558 6306581 chrX 6306631 6306658 6 76 2.0 1.5 1.8 2.1 100 chrX 6306558 3` UTR CG3823 + chrX 6306608 3` UTR CG3823 + chrX 6306658 3` UTR CG3823 + chrX_6_6305001 chrX_6305001 RAL-776 1772 chrX 6335212 6335243 chrX 6337722 6337753 Tirant 11 2509 0.5 2.5 1.5 4.4 2541 chrX 6335212 intergenic not near genes chrX 6336482 intergenic not near genes chrX 6337753 intergenic CG3842 + chrX_11_6335001 chrX_6335001 RAL-776 1773 chrX 6392876 6392902 chrX 6397640 6397660 Doc 6 4763 3.0 5.0 4.0 1.2 4784 chrX 6392876 intergenic not near genes chrX 6395268 intergenic not near genes chrX 6397660 intergenic not near genes chrX_6_6395001 chrX_6395001 RAL-776 1774 chrX 6404841 6404871 chrX 6404968 6404998 7 127 1.0 3.5 2.2 2.2 157 chrX 6404841 intergenic not near genes chrX 6404920 intergenic not near genes chrX 6404998 intergenic not near genes chrX_7_6400001 chrX_6400001 RAL-776 1775 chrX 6551719 6551750 chrX 6551800 6551831 9 79 2.0 1.0 1.5 3.6 112 chrX 6551719 intron CG34417 + chrX 6551775 intron CG34417 + chrX 6551831 intron CG34417 + chrX_9_6550001 chrX_6550001 RAL-776 1776 chrX 6562822 6562826 chrX 6571298 6571308 Tirant 5 8479 8.5 0.0 4.2 1.0 8486 chrX 6562822 intron CG34417 + chrX 6567065 intron CG34417 + chrX 6571308 intron CG34417 + chrX_5_6565001 chrX_6565001 RAL-776 1777 chrX 6605481 6605507 chrX 6608503 6608525 Burdock 6 3021 0.0 2.0 1.0 3.0 3044 chrX 6605481 intron pigs + chrX 6607003 intron pigs + chrX 6608525 intron pigs + chrX_6_6605001 chrX_6605001 RAL-776 1778 chrX 6737524 6737552 chrX 6737606 6737634 6 80 1.5 1.0 1.2 2.7 110 chrX 6737524 intron CG3168 - chrX 6737579 intron CG3168 - chrX 6737634 intron CG3168 - chrX_6_6735001 chrX_6735001 RAL-776 1779 chrX 6859563 6859576 chrX 6859976 6859989 4 413 3.0 0.0 1.5 1.6 426 chrX 6859563 intron CG14434 - chrX 6859776 intron CG14434 - chrX 6859989 intron CG14434 - chrX_4_6855001 chrX_6855001 RAL-776 1780 chrX 6883154 6883170 chrX 6883235 6883252 5 81 4.0 2.0 3.0 1.2 98 chrX 6883154 intergenic not near genes chrX 6883203 intergenic not near genes chrX 6883252 intergenic not near genes chrX_5_6880001 chrX_6880001 RAL-776 1781 chrX 6897577 6897711 chrX 6897655 6897821 7 99 0.5 2.0 1.2 3.2 244 chrX 6897577 intergenic not near genes chrX 6897699 intergenic not near genes chrX 6897821 intergenic not near genes chrX_7_6895001 chrX_6895001 RAL-776 1782 chrX 7023602 7023622 chrX 7030992 7031012 Tabor 8 7390 4.0 0.5 2.2 2.5 7410 chrX 7023602 intron CG12541 - chrX 7027307 intron CG12541 - chrX 7031012 intron CG12541 - chrX_8_7025001 chrX_7025001 RAL-776 1783 chrX 7125243 7125279 chrX 7134402 7134438 roo 11 9159 0.5 1.0 0.8 6.1 9195 chrX 7125243 intergenic not near genes chrX 7129840 intergenic not near genes chrX 7134438 intergenic not near genes chrX_11_7125001 chrX_7125001 RAL-776 1784 chrX 7498345 7498366 chrX 7498416 7498448 5 76 2.5 2.5 2.5 1.4 103 chrX 7498345 intergenic not near genes chrX 7498396 intergenic not near genes chrX 7498448 intergenic not near genes chrX_5_7495001 chrX_7495001 RAL-776 1785 chrX 7702897 7702922 chrX 7703336 7703361 jockey 5 439 6.0 3.0 4.5 0.9 464 chrX 7702897 intron CHES-1-like - chrX 7703129 intron CHES-1-like - chrX 7703361 intron CHES-1-like - chrX_5_7700001 chrX_7700001 RAL-776 1786 chrX 7798372 7798385 chrX 7798462 7798474 5 88 9.5 1.5 5.5 0.8 102 chrX 7798372 intergenic not near genes chrX 7798423 intergenic not near genes chrX 7798474 intergenic not near genes chrX_5_7795001 chrX_7795001 RAL-776 1787 chrX 7832434 7832462 chrX 7832523 7832536 6 85 1.0 2.0 1.5 2.4 102 chrX 7832434 intron CG1402 + chrX 7832485 intron CG1402 + chrX 7832536 intron CG1402 + chrX_6_7830001 chrX_7830001 RAL-776 1788 chrX 7845726 7845751 chrX 7847217 7847242 hopper2 6 1491 5.0 3.0 4.0 1.2 1516 chrX 7845726 intergenic not near genes chrX 7846484 intergenic not near genes chrX 7847242 intergenic not near genes chrX_6_7845001 chrX_7845001 RAL-776 1789 chrX 8085574 8085598 chrX 8085660 8085684 4 86 2.0 1.0 1.5 1.6 110 chrX 8085574 intron,5` UTR CG2256 -,CR45535 + chrX 8085629 intron,5` UTR CG2256 -,CR45535 + chrX 8085684 intron,5` UTR CG2256 -,CR45535 + chrX_4_8085001 chrX_8085001 RAL-776 1790 chrX 8260018 8260024 chrX 8260109 8260114 4 90 5.5 2.0 3.8 0.8 96 chrX 8260018 intron CG1632 + chrX 8260066 intron CG1632 + chrX 8260114 intron CG1632 + chrX_4_8260001 chrX_8260001 RAL-776 1791 chrX 8513093 8513126 chrX 8513360 8513393 11 267 0.5 1.0 0.8 6.1 300 chrX 8513093 intron CG33181 + chrX 8513243 intron CG33181 + chrX 8513393 intron CG33181 + chrX_11_8510001 chrX_8510001 RAL-776 1792 chrX 8787489 8787500 chrX 8787585 8787594 4 94 2.5 3.5 3.0 1.0 105 chrX 8787489 intron Lim1 - chrX 8787542 intron Lim1 - chrX 8787594 intron Lim1 - chrX_4_8785001 chrX_8785001 RAL-776 1793 chrX 8922328 8922362 chrX 8922762 8922795 jockey 13 433 0.5 2.0 1.2 5.9 467 chrX 8922328 intron rdgA + chrX 8922562 intron rdgA + chrX 8922795 intron rdgA + chrX_13_8920001 chrX_8920001 RAL-776 1794 chrX 9129478 9129501 chrX 9129564 9129579 8 84 6.0 4.0 5.0 1.3 101 chrX 9129478 intron fend - chrX 9129528 intron fend - chrX 9129579 intron fend - chrX_8_9125001 chrX_9125001 RAL-776 1795 chrX 9220224 9220249 chrX 9220307 9220333 6 84 1.5 1.5 1.5 2.4 109 chrX 9220224 intron t - chrX 9220278 intron t - chrX 9220333 intron t - chrX_6_9220001 chrX_9220001 RAL-776 1796 chrX 9337953 9337970 chrX 9338045 9338062 7 92 1.5 5.0 3.2 1.7 109 chrX 9337953 intron CG34449 - chrX 9338008 intron CG34449 - chrX 9338062 exon CG34449 - chrX_7_9335001 chrX_9335001 RAL-776 1797 chrX 9508138 9508165 chrX 9509656 9509656 jockey 7 1514 4.0 2.0 3.0 1.8 1518 chrX 9508138 intron CG32700 - chrX 9508897 intron CG32700 - chrX 9509656 intron CG32700 - chrX_7_9505001 chrX_9505001 RAL-776 1798 chrX 9575794 9575824 chrX 9576118 9576146 mdg3 6 320 0.5 3.5 2.0 2.0 352 chrX 9575794 intron,exon CG32699 -,CG42395 - chrX 9575970 intron,intron CG32699 -,CG42395 - chrX 9576146 intron,5` UTR CG32699 -,CG42395 - chrX_6_9575001 chrX_9575001 RAL-776 1799 chrX 9758051 9758081 chrX 9758134 9758166 4 84 4.0 1.0 2.5 1.1 115 chrX 9758051 intergenic not near genes chrX 9758108 intergenic not near genes chrX 9758166 intergenic not near genes chrX_4_9755001 chrX_9755001 RAL-776 1800 chrX 8382094 8382097 chrX 9845361 9845361 5 1463266 13.0 9.5 11.2 0.4 1463267 chrX 8382094 intergenic not near genes chrX 9113728 exon AP-1gamma + chrX 9845361 intron CG32698 + chrX_5_9110001 chrX_9110001 RAL-776 1801 chrX 10246977 10247005 chrX 10247067 10247095 8 90 3.5 2.5 3.0 2.0 118 chrX 10246977 intron Hk - chrX 10247036 intron Hk - chrX 10247095 intron Hk - chrX_8_10245001 chrX_10245001 RAL-776 1802 chrX 10550341 10550364 chrX 10550419 10550442 5 78 0.5 0.0 0.2 4.2 101 chrX 10550341 intron spri - chrX 10550392 intron spri - chrX 10550442 intron spri - chrX_5_10550001 chrX_10550001 RAL-776 1803 chrX 10550851 10550889 chrX 10552317 10552345 hobo 12 1465 4.5 1.5 3.0 3.0 1494 chrX 10550851 intron spri - chrX 10551598 intron spri - chrX 10552345 intron spri - chrX_12_10550001 chrX_10550001 RAL-776 1804 chrX 10772684 10772697 chrX 10772760 10772780 Tirant 4 79 3.0 2.0 2.5 1.1 96 chrX 10772684 intron CG15211 + chrX 10772732 intron CG15211 + chrX 10772780 intron CG15211 + chrX_4_10770001 chrX_10770001 RAL-776 1805 chrX 11166767 11166786 chrX 11166848 11166860 6 79 1.5 6.0 3.8 1.2 93 chrX 11166767 intergenic not near genes chrX 11166814 intergenic not near genes chrX 11166860 intergenic not near genes chrX_6_11165001 chrX_11165001 RAL-776 1806 chrX 11268563 11268581 chrX 11270056 11270065 hopper2 6 1489 3.0 5.5 4.2 1.2 1502 chrX 11268563 intron CG44422 - chrX 11269314 intron CG44422 - chrX 11270065 intron CG44422 - chrX_6_11265001 chrX_11265001 RAL-776 1807 chrX 11312064 11312086 chrX 11319412 11319424 Stalker2 7 7349 2.5 1.0 1.8 2.5 7360 chrX 11312064 intergenic not near genes chrX 11315744 intergenic not near genes chrX 11319424 intergenic not near genes chrX_7_11315001 chrX_11315001 RAL-776 1808 chrX 11340878 11340897 chrX 11340953 11340976 5 78 3.5 2.0 2.8 1.3 98 chrX 11340878 intron CG34348 + chrX 11340927 intron CG34348 + chrX 11340976 intron CG34348 + chrX_5_11340001 chrX_11340001 RAL-776 1809 chrX 11464810 11464831 chrX 11464882 11464903 5 76 3.5 2.0 2.8 1.3 93 chrX 11464810 intron CG43155 + chrX 11464856 intron CG43155 + chrX 11464903 intron CG43155 + chrX_5_11460001 chrX_11460001 RAL-776 1810 chrX 11922364 11922382 chrX 11922497 11922515 5 133 4.0 3.5 3.8 1.0 151 chrX 11922364 exon Sclp - chrX 11922440 intron Sclp - chrX 11922515 intron Sclp - chrX_5_11920001 chrX_11920001 RAL-776 1811 chrX 12041178 12041207 chrX 12041613 12041638 8 433 0.5 2.5 1.5 3.2 460 chrX 12041178 intergenic not near genes chrX 12041408 intergenic not near genes chrX 12041638 intergenic not near genes chrX_8_12040001 chrX_12040001 RAL-776 1812 chrX 12043834 12043850 chrX 12043923 12043939 4 89 0.5 0.0 0.2 3.3 105 chrX 12043834 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043886 5` UTR,5` UTR CR43960 +,Ten-a + chrX 12043939 5` UTR,5` UTR CR43960 +,Ten-a + chrX_4_12040001 chrX_12040001 RAL-776 1813 chrX 12053531 12053565 chrX 12054059 12054093 6 526 3.0 5.0 4.0 1.2 562 chrX 12053531 intron,intron CR43960 +,Ten-a + chrX 12053812 intron,intron CR43960 +,Ten-a + chrX 12054093 intron,intron CR43960 +,Ten-a + chrX_6_12050001 chrX_12050001 RAL-776 1814 chrX 12176736 12176769 chrX 12176812 12176844 7 75 3.5 6.0 4.8 1.2 108 chrX 12176736 intron,3` UTR Ten-a +,CG1924 - chrX 12176790 intron,3` UTR Ten-a +,CG1924 - chrX 12176844 intron,3` UTR Ten-a +,CG1924 - chrX_7_12175001 chrX_12175001 RAL-776 1815 chrX 12272849 12272867 chrX 12272928 12272946 4 79 2.5 2.5 2.5 1.1 97 chrX 12272849 intron Ten-a + chrX 12272898 intron Ten-a + chrX 12272946 intron Ten-a + chrX_4_12270001 chrX_12270001 RAL-776 1816 chrX 12350778 12350797 chrX 12350856 12350874 7 80 5.0 0.0 2.5 2.0 96 chrX 12350778 intergenic not near genes chrX 12350826 intergenic not near genes chrX 12350874 intergenic not near genes chrX_7_12350001 chrX_12350001 RAL-776 1817 chrX 12375492 12375498 chrX 12375590 12375591 4 96 2.5 1.0 1.8 1.4 99 chrX 12375492 intergenic Ir11a - chrX 12375542 intergenic Ir11a - chrX 12375591 intergenic Ir11a - chrX_4_12375001 chrX_12375001 RAL-776 1818 chrX 12449512 12449524 chrX 12449656 12449668 7 143 4.0 1.0 2.5 2.0 156 chrX 12449512 intron Pkcdelta + chrX 12449590 intron Pkcdelta + chrX 12449668 intron Pkcdelta + chrX_7_12445001 chrX_12445001 RAL-776 1819 chrX 12960764 12960797 chrX 12960845 12960878 6 80 1.0 2.0 1.5 2.4 114 chrX 12960764 3` UTR CG32642 + chrX 12960821 intergenic CG32642 + chrX 12960878 intergenic CG32642 + chrX_6_12960001 chrX_12960001 RAL-776 1820 chrX 13146597 13146629 chrX 13146685 13146717 7 88 2.5 3.0 2.8 1.8 120 chrX 13146597 intron CG32645 + chrX 13146657 intron CG32645 + chrX 13146717 intron CG32645 + chrX_7_13145001 chrX_13145001 RAL-776 1821 chrX 13172350 13172382 chrX 13172426 13172458 11 73 1.0 2.0 1.5 4.4 108 chrX 13172350 exon CG34411 - chrX 13172404 intron CG34411 - chrX 13172458 intron CG34411 - chrX_11_13170001 chrX_13170001 RAL-776 1822 chrX 13429471 13429489 chrX 13430620 13430638 jockey 6 1148 0.0 3.5 1.8 2.1 1167 chrX 13429471 intergenic not near genes chrX 13430054 intergenic not near genes chrX 13430638 intergenic not near genes chrX_6_13430001 chrX_13430001 RAL-776 1823 chrX 13485693 13485721 chrX 13485784 13485812 7 91 1.0 1.0 1.0 3.5 119 chrX 13485693 intron Neto + chrX 13485752 intron Neto + chrX 13485812 intron Neto + chrX_7_13485001 chrX_13485001 RAL-776 1824 chrX 13632181 13632187 chrX 13632451 13632457 4 270 0.5 5.0 2.8 1.1 276 chrX 13632181 intron NFAT + chrX 13632319 intron NFAT + chrX 13632457 intron NFAT + chrX_4_13630001 chrX_13630001 RAL-776 1825 chrX 13878916 13878929 chrX 13879022 13879035 5 106 3.5 1.0 2.2 1.6 119 chrX 13878916 intron mamo - chrX 13878976 intron mamo - chrX 13879035 intron mamo - chrX_5_13875001 chrX_13875001 RAL-776 1826 chrX 13943271 13943301 chrX 13943360 13943392 6 91 0.0 2.0 1.0 3.0 121 chrX 13943271 intron mamo - chrX 13943332 intron mamo - chrX 13943392 intron mamo - chrX_6_13940001 chrX_13940001 RAL-776 1827 chrX 14105026 14105053 chrX 14114177 14114186 roo 11 9145 3.5 4.5 4.0 2.2 9160 chrX 14105026 intergenic not near genes chrX 14109606 intergenic not near genes chrX 14114186 5` UTR CR44657 + chrX_11_14105001 chrX_14105001 RAL-776 1828 chrX 14131515 14131524 chrX 14131568 14131600 4 67 1.0 3.5 2.2 1.2 85 chrX 14131515 intergenic not near genes chrX 14131558 intergenic not near genes chrX 14131600 intergenic not near genes chrX_4_14130001 chrX_14130001 RAL-776 1829 chrX 14157592 14157612 chrX 14163248 14163269 297 5 5656 1.5 1.0 1.2 2.3 5677 chrX 14157592 intergenic not near genes chrX 14160430 intergenic not near genes chrX 14163269 intergenic not near genes chrX_5_14160001 chrX_14160001 RAL-776 1830 chrX 14370703 14370728 chrX 14370782 14370819 10 87 1.5 3.0 2.2 3.1 116 chrX 14370703 intron dpr8 + chrX 14370761 intron dpr8 + chrX 14370819 intron dpr8 + chrX_10_14370001 chrX_14370001 RAL-776 1831 chrX 14484974 14484984 chrX 14485063 14485073 4 88 0.0 6.0 3.0 1.0 99 chrX 14484974 intergenic not near genes chrX 14485024 intergenic not near genes chrX 14485073 intergenic not near genes chrX_4_14485001 chrX_14485001 RAL-776 1832 chrX 14589687 14589707 chrX 14589928 14589948 pogo 6 239 1.5 2.5 2.0 2.0 261 chrX 14589687 intron CG9413 - chrX 14589818 intron CG9413 - chrX 14589948 intron CG9413 - chrX_6_14585001 chrX_14585001 RAL-776 1833 chrX 14628181 14628217 chrX 14628272 14628308 7 91 2.0 0.0 1.0 3.5 127 chrX 14628181 intron NetA - chrX 14628244 intron NetA - chrX 14628308 intron NetA - chrX_7_14625001 chrX_14625001 RAL-776 1834 chrX 14636464 14636489 chrX 14641905 14641925 I-element 6 5438 3.0 3.5 3.2 1.4 5461 chrX 14636464 intron NetA - chrX 14639194 intron NetA - chrX 14641925 intron NetA - chrX_6_14635001 chrX_14635001 RAL-776 1835 chrX 14714046 14714060 chrX 14714127 14714142 5 82 2.0 5.0 3.5 1.1 96 chrX 14714046 intron NetB - chrX 14714094 intron NetB - chrX 14714142 intron NetB - chrX_5_14710001 chrX_14710001 RAL-776 1836 chrX 14778026 14778056 chrX 14782823 14782853 Doc 7 4796 2.0 2.5 2.2 2.2 4827 chrX 14778026 intergenic CG5347 + chrX 14780440 intergenic not near genes chrX 14782853 intergenic Ag5r2 - chrX_7_14780001 chrX_14780001 RAL-776 1837 chrX 14813760 14813765 chrX 14813838 14813843 4 78 2.0 5.5 3.8 0.8 83 chrX 14813760 intron rut - chrX 14813802 intron rut - chrX 14813843 intron rut - chrX_4_14810001 chrX_14810001 RAL-776 1838 chrX 14818774 14818795 chrX 14823978 14823982 copia 5 5198 3.5 2.0 2.8 1.3 5208 chrX 14818774 intron rut - chrX 14821378 intron rut - chrX 14823982 intron rut - chrX_5_14820001 chrX_14820001 RAL-776 1839 chrX 14861934 14861942 chrX 14862148 14862169 4 217 8.0 14.5 11.2 0.3 235 chrX 14861934 intron Flo2 + chrX 14862052 intron Flo2 + chrX 14862169 intron Flo2 + chrX_4_14860001 chrX_14860001 RAL-776 1840 chrX 14883598 14883618 chrX 14883674 14883694 8 75 2.0 0.0 1.0 4.0 96 chrX 14883598 intron Flo2 + chrX 14883646 intron Flo2 + chrX 14883694 intron Flo2 + chrX_8_14880001 chrX_14880001 RAL-776 1841 chrX 14897830 14897850 chrX 14897906 14897934 7 82 1.5 3.0 2.2 2.2 104 chrX 14897830 intron Flo2 + chrX 14897882 intron Flo2 + chrX 14897934 intron Flo2 + chrX_7_14895001 chrX_14895001 RAL-776 1842 chrX 14952435 14952465 chrX 14952603 14952633 14 168 4.5 4.0 4.2 2.7 198 chrX 14952435 intron,3` UTR pdgy -,CR44831 - chrX 14952534 intron,3` UTR pdgy -,CR44831 - chrX 14952633 intron,3` UTR pdgy -,CR44831 - chrX_14_14950001 chrX_14950001 RAL-776 1843 chrX 15385527 15385541 chrX 15385659 15385681 7 139 1.5 3.0 2.2 2.2 154 chrX 15385527 intergenic CG9164 - chrX 15385604 intergenic CG9164 -,Cngl - chrX 15385681 intergenic CG9164 -,Cngl - chrX_7_15385001 chrX_15385001 RAL-776 1844 chrX 15413049 15413087 chrX 15417350 15417389 Juan 9 4299 1.5 1.0 1.2 4.1 4340 chrX 15413049 intron Cngl - chrX 15415219 intron Cngl - chrX 15417389 intron Cngl - chrX_9_15415001 chrX_15415001 RAL-776 1845 chrX 15435687 15435696 chrX 15436120 15436129 rover 6 433 0.0 6.5 3.2 1.4 442 chrX 15435687 intron Cngl - chrX 15435908 intron Cngl - chrX 15436129 intron Cngl - chrX_6_15435001 chrX_15435001 RAL-776 1846 chrX 15435697 15435703 chrX 15436118 15436136 rover 5 430 0.0 6.5 3.2 1.2 439 chrX 15435697 intron Cngl - chrX 15435916 intron Cngl - chrX 15436136 intron Cngl - chrX_5_15435001 chrX_15435001 RAL-776 1847 chrX 15637527 15637544 chrX 15637847 15637864 8 320 0.0 3.0 1.5 3.2 337 chrX 15637527 intergenic not near genes chrX 15637696 intergenic not near genes chrX 15637864 intergenic not near genes chrX_8_15635001 chrX_15635001 RAL-776 1848 chrX 15959537 15959553 chrX 15959625 15959639 5 87 1.0 0.5 0.8 2.8 102 chrX 15959537 intron mmd - chrX 15959588 intron mmd - chrX 15959639 intron mmd - chrX_5_15955001 chrX_15955001 RAL-776 1849 chrX 16295530 16295549 chrX 16295614 16295633 5 84 1.5 0.0 0.8 2.8 103 chrX 16295530 intron CG9911 - chrX 16295582 intron CG9911 - chrX 16295633 intron CG9911 - chrX_5_16295001 chrX_16295001 RAL-776 1850 chrX 16492644 16492671 chrX 16498221 16498248 mdg3 9 5576 3.0 0.0 1.5 3.6 5604 chrX 16492644 intron para - chrX 16495446 intron para - chrX 16498248 intron para - chrX_9_16495001 chrX_16495001 RAL-776 1851 chrX 16725246 16725276 chrX 16725489 16725519 8 245 13.5 15.0 14.2 0.5 273 chrX 16725246 intron CG32572 + chrX 16725382 intron CG32572 + chrX 16725519 intron CG32572 + chrX_8_16725001 chrX_16725001 RAL-776 1852 chrX 16785279 16785307 chrX 16785383 16785411 8 104 1.0 1.0 1.0 4.0 132 chrX 16785279 3` UTR CG9609 - chrX 16785345 3` UTR CG9609 - chrX 16785411 3` UTR CG9609 - chrX_8_16785001 chrX_16785001 RAL-776 1853 chrX 17063186 17063205 chrX 17063273 17063292 4 87 2.0 0.5 1.2 1.8 106 chrX 17063186 intron CG45002 - chrX 17063239 intron CG45002 - chrX 17063292 intron CG45002 - chrX_4_17060001 chrX_17060001 RAL-776 1854 chrX 17122651 17122669 chrX 17122728 17122760 8 88 2.5 5.0 3.8 1.7 109 chrX 17122651 intron CG5004 + chrX 17122706 intron CG5004 + chrX 17122760 intron CG5004 + chrX_8_17120001 chrX_17120001 RAL-776 1855 chrX 17195217 17195236 chrX 17200302 17200322 flea 5 5086 1.5 1.0 1.2 2.3 5105 chrX 17195217 3` UTR baz + chrX 17197770 3` UTR baz + chrX 17200322 3` UTR baz + chrX_5_17195001 chrX_17195001 RAL-776 1856 chrX 17211436 17211461 chrX 17212140 17212164 10 704 9.0 19.5 14.2 0.7 728 chrX 17211436 intergenic not near genes chrX 17211800 intergenic not near genes chrX 17212164 intergenic CG18258 + chrX_10_17210001 chrX_17210001 RAL-776 1857 chrX 17352592 17352616 chrX 17352695 17352719 7 103 0.0 1.5 0.8 3.9 127 chrX 17352592 intergenic not near genes chrX 17352656 intergenic not near genes chrX 17352719 intergenic not near genes chrX_7_17350001 chrX_17350001 RAL-776 1858 chrX 17680890 17680922 chrX 17680965 17680999 12 76 3.0 3.0 3.0 3.0 109 chrX 17680890 intron chas - chrX 17680944 intron chas - chrX 17680999 intron chas - chrX_12_17680001 chrX_17680001 RAL-776 1859 chrX 18122833 18122850 chrX 18122906 18122926 4 74 4.5 3.0 3.8 0.8 93 chrX 18122833 5` UTR CR45606 + chrX 18122880 5` UTR CR45606 + chrX 18122926 intergenic CR45606 + chrX_4_18120001 chrX_18120001 RAL-776 1860 chrX 18194067 18194103 chrX 18194601 18194637 BS 12 534 1.5 2.0 1.8 4.3 570 chrX 18194067 intron Frq2 + chrX 18194352 intron Frq2 + chrX 18194637 intron Frq2 + chrX_12_18190001 chrX_18190001 RAL-776 1861 chrX 18281555 18281583 chrX 18281630 18281663 6 80 4.0 2.5 3.2 1.4 108 chrX 18281555 intron upd3 + chrX 18281609 intron upd3 + chrX 18281663 intron upd3 + chrX_6_18280001 chrX_18280001 RAL-776 1862 chrX 18386056 18386074 chrX 18386157 18386175 8 100 2.5 0.0 1.2 3.6 119 chrX 18386056 intergenic not near genes chrX 18386116 intergenic not near genes chrX 18386175 intergenic not near genes chrX_8_18385001 chrX_18385001 RAL-776 1863 chrX 18486120 18486141 chrX 18486209 18486230 11 89 0.5 5.5 3.0 2.8 110 chrX 18486120 exon psh - chrX 18486175 intron psh - chrX 18486230 intron psh - chrX_11_18485001 chrX_18485001 RAL-776 1864 chrX 18645012 18645048 chrX 18645110 18645146 6 98 1.5 1.0 1.2 2.7 134 chrX 18645012 intron Rip11 - chrX 18645079 intron Rip11 - chrX 18645146 intron Rip11 - chrX_6_18645001 chrX_18645001 RAL-776 1865 chrX 18995701 18995730 chrX 18995777 18995806 4 73 2.5 2.0 2.2 1.2 105 chrX 18995701 intron CG43759 + chrX 18995754 intron CG43759 + chrX 18995806 intron CG43759 + chrX_4_18995001 chrX_18995001 RAL-776 1866 chrX 19014361 19014393 chrX 19014440 19014472 8 77 2.5 3.0 2.8 2.1 111 chrX 19014361 intron CG43759 + chrX 19014416 intron CG43759 + chrX 19014472 intron CG43759 + chrX_8_19010001 chrX_19010001 RAL-776 1867 chrX 19080331 19080357 chrX 19080437 19080463 14 106 3.0 1.5 2.2 4.4 132 chrX 19080331 intergenic not near genes chrX 19080397 intergenic not near genes chrX 19080463 intergenic not near genes chrX_14_19080001 chrX_19080001 RAL-776 1868 chrX 19084099 19084121 chrX 19084217 19084232 4 117 0.0 1.0 0.5 2.7 133 chrX 19084099 intergenic CR45503 + chrX 19084166 intergenic CR45503 + chrX 19084232 intergenic CR45503 + chrX_4_19080001 chrX_19080001 RAL-776 1869 chrX 19099654 19099685 chrX 19099737 19099768 7 82 1.5 2.5 2.0 2.3 114 chrX 19099654 intergenic not near genes chrX 19099711 intergenic not near genes chrX 19099768 intergenic not near genes chrX_7_19095001 chrX_19095001 RAL-776 1870 chrX 19125692 19125717 chrX 19125820 19125846 7 128 1.5 2.5 2.0 2.3 154 chrX 19125692 intron tgy - chrX 19125769 intron tgy - chrX 19125846 intron tgy - chrX_7_19125001 chrX_19125001 RAL-776 1871 chrX 19136552 19136580 chrX 19143472 19143499 412 5 6914 4.0 5.5 4.8 0.9 6947 chrX 19136552 intergenic not near genes chrX 19140026 intergenic not near genes chrX 19143499 3` UTR RhoGAP18B - chrX_5_19140001 chrX_19140001 RAL-776 1872 chrX 19152472 19152491 chrX 19152563 19152582 4 89 0.0 3.0 1.5 1.6 110 chrX 19152472 intron RhoGAP18B - chrX 19152527 intron RhoGAP18B - chrX 19152582 intron RhoGAP18B - chrX_4_19150001 chrX_19150001 RAL-776 1873 chrX 19176209 19176240 chrX 19176293 19176324 9 84 4.0 3.5 3.8 1.9 115 chrX 19176209 3` UTR CG7556 - chrX 19176266 3` UTR CG7556 - chrX 19176324 3` UTR CG7556 - chrX_9_19175001 chrX_19175001 RAL-776 1874 chrX 13057295 13057300 chrX 19242813 19242814 5 6185515 1.0 2.0 1.5 2.0 6185519 chrX 13057295 intron rad + chrX 16150054 intergenic not near genes chrX 19242814 intergenic not near genes chrX_5_16150001 chrX_16150001 RAL-776 1875 chrX 19318539 19318560 chrX 19318786 19318801 9 243 1.0 6.0 3.5 2.0 262 chrX 19318539 intron out - chrX 19318670 intron out - chrX 19318801 intron out - chrX_9_19315001 chrX_19315001 RAL-776 1876 chrX 19356988 19357015 chrX 19358429 19358456 NOF 9 1441 2.5 4.5 3.5 2.0 1468 chrX 19356988 intron kek5 + chrX 19357722 intron kek5 + chrX 19358456 intron kek5 + chrX_9_19355001 chrX_19355001 RAL-776 1877 chrX 19380163 19380188 chrX 19380404 19380429 pogo 7 241 3.0 3.0 3.0 1.8 266 chrX 19380163 intron kek5 + chrX 19380296 intron kek5 + chrX 19380429 intron kek5 + chrX_7_19380001 chrX_19380001 RAL-776 1878 chrX 19472119 19472152 chrX 19472689 19472717 jockey 10 567 2.5 4.0 3.2 2.4 598 chrX 19472119 intergenic kek5 + chrX 19472418 intergenic not near genes chrX 19472717 intergenic not near genes chrX_10_19470001 chrX_19470001 RAL-776 1879 chrX 19576559 19576586 chrX 19576637 19576656 5 76 1.0 3.0 2.0 1.7 97 chrX 19576559 intron Tao - chrX 19576608 intron Tao - chrX 19576656 intron Tao - chrX_5_19575001 chrX_19575001 RAL-776 1880 chrX 19710072 19710103 chrX 19711858 19711887 S-element 9 1786 1.5 5.0 3.2 2.1 1815 chrX 19710072 intron meso18E - chrX 19710980 intron meso18E - chrX 19711887 intron meso18E - chrX_9_19710001 chrX_19710001 RAL-776 1881 chrX 19881457 19881484 chrX 19881535 19881548 7 77 1.5 2.0 1.8 2.5 91 chrX 19881457 intron Hers + chrX 19881502 intron Hers + chrX 19881548 intron Hers + chrX_7_19880001 chrX_19880001 RAL-776 1882 chrX 20041548 20041566 chrX 20041628 20041646 4 80 1.0 2.5 1.8 1.4 98 chrX 20041548 intron Dop2R - chrX 20041597 intron Dop2R - chrX 20041646 intron Dop2R - chrX_4_20040001 chrX_20040001 RAL-776 1883 chrX 20065805 20065831 chrX 20065884 20065903 10 77 4.5 1.5 3.0 2.5 98 chrX 20065805 intergenic not near genes chrX 20065854 intergenic not near genes chrX 20065903 intergenic not near genes chrX_10_20065001 chrX_20065001 RAL-776 1884 chrX 20070260 20070284 chrX 20070340 20070357 4 78 4.0 5.5 4.8 0.7 97 chrX 20070260 intergenic not near genes chrX 20070308 intergenic not near genes chrX 20070357 intergenic not near genes chrX_4_20070001 chrX_20070001 RAL-776 1885 chrX 20105195 20105230 chrX 20105299 20105333 11 104 24.0 28.5 26.2 0.4 138 chrX 20105195 intergenic not near genes chrX 20105264 intergenic not near genes chrX 20105333 intergenic not near genes chrX_11_20105001 chrX_20105001 RAL-776 1886 chrX 20279751 20279767 chrX 20279832 20279848 6 81 1.5 0.0 0.8 3.3 97 chrX 20279751 intergenic not near genes chrX 20279800 intergenic not near genes chrX 20279848 intergenic not near genes chrX_6_20275001 chrX_20275001 RAL-776 1887 chrX 20312891 20312908 chrX 20312969 20312986 7 78 2.5 2.5 2.5 2.0 95 chrX 20312891 intron CG1504 - chrX 20312938 intron CG1504 - chrX 20312986 intron CG1504 - chrX_7_20310001 chrX_20310001 RAL-776 1888 chrX 20377325 20377348 chrX 20378792 20378800 hobo 9 1465 4.0 1.5 2.8 2.4 1475 chrX 20377325 intergenic not near genes chrX 20378062 intergenic not near genes chrX 20378800 intergenic not near genes chrX_9_20375001 chrX_20375001 RAL-776 1889 chrX 20531761 20531796 chrX 20531860 20531895 4 99 0.0 0.0 0.0 4.0 134 chrX 20531761 intergenic not near genes chrX 20531828 intergenic not near genes chrX 20531895 intergenic not near genes chrX_4_20530001 chrX_20530001 RAL-776 1890 chrX 20575163 20575185 chrX 20575239 20575263 4 78 1.0 5.0 3.0 1.0 100 chrX 20575163 intergenic CG42580 + chrX 20575213 intergenic not near genes chrX 20575263 intergenic not near genes chrX_4_20575001 chrX_20575001 RAL-776 1891 chrX 20583726 20583754 chrX 20583894 20583925 8 168 2.5 0.0 1.2 3.6 199 chrX 20583726 intergenic not near genes chrX 20583826 intergenic not near genes chrX 20583925 intergenic not near genes chrX_8_20580001 chrX_20580001 RAL-776 1892 chrX 20784009 20784033 chrX 20784120 20784145 4 112 1.5 2.0 1.8 1.4 136 chrX 20784009 intron shakB - chrX 20784077 intron shakB - chrX 20784145 intron shakB - chrX_4_20780001 chrX_20780001 RAL-776 1893 chrX 20907328 20907353 chrX 20907412 20907437 6 84 2.5 2.5 2.5 1.7 109 chrX 20907328 intron shakB - chrX 20907382 intron shakB - chrX 20907437 intron shakB - chrX_6_20905001 chrX_20905001 RAL-776 1894 chrX 20940722 20940752 chrX 20942191 20942220 hobo 9 1468 5.5 7.5 6.5 1.2 1498 chrX 20940722 intergenic not near genes chrX 20941471 intergenic not near genes chrX 20942220 intergenic not near genes chrX_9_20940001 chrX_20940001 RAL-776 1895 chrX 21029161 21029184 chrX 21029378 21029401 4 216 0.0 6.5 3.2 1.0 240 chrX 21029161 3` UTR CG1529 - chrX 21029281 3` UTR CG1529 - chrX 21029401 3` UTR CG1529 - chrX_4_21025001 chrX_21025001 RAL-776 1896 chrX 21088047 21088073 chrX 21088179 21088204 4 128 0.5 1.0 0.8 2.2 157 chrX 21088047 intergenic not near genes chrX 21088126 intergenic not near genes chrX 21088204 intergenic not near genes chrX_4_21085001 chrX_21085001 RAL-776 1897 chrX 21197082 21197088 chrX 21197134 21197166 5 65 1.5 0.5 1.0 2.5 84 chrX 21197082 intergenic not near genes chrX 21197124 intergenic not near genes chrX 21197166 intergenic not near genes chrX_5_21195001 chrX_21195001 RAL-776 1898 chrX 21254650 21254673 chrX 21255566 21255584 hopper2 4 915 1.5 0.0 0.8 2.2 934 chrX 21254650 intron CG32521 - chrX 21255117 intron CG32521 - chrX 21255584 intron CG32521 - chrX_4_21255001 chrX_21255001 RAL-776 1899 chrX 21264733 21264764 chrX 21264809 21264840 7 76 2.0 3.5 2.8 1.8 107 chrX 21264733 intron CG32521 - chrX 21264786 intron CG32521 - chrX 21264840 intron CG32521 - chrX_7_21260001 chrX_21260001 RAL-776 1900 chrX 21410423 21410443 chrX 21410683 21410703 7 260 3.0 2.0 2.5 2.0 280 chrX 21410423 intron CR45003 - chrX 21410563 intergenic CR45003 - chrX 21410703 intergenic CR45003 - chrX_7_21410001 chrX_21410001 RAL-776 1901 chrX 21458700 21458727 chrX 21464134 21464162 Ivk 6 5436 1.5 2.0 1.8 2.1 5462 chrX 21458700 intergenic not near genes chrX 21461431 intergenic not near genes chrX 21464162 intergenic not near genes chrX_6_21460001 chrX_21460001 RAL-776 1902 chrX 21516992 21517005 chrX 21517064 21517084 5 77 4.5 3.0 3.8 1.0 92 chrX 21516992 intron CR45082 - chrX 21517038 intron CR45082 - chrX 21517084 intron CR45082 - chrX_5_21515001 chrX_21515001 RAL-776 1903 chrX 21565417 21565437 chrX 21565494 21565515 5 78 2.0 3.0 2.5 1.4 98 chrX 21565417 intergenic not near genes chrX 21565466 intergenic not near genes chrX 21565515 intergenic not near genes chrX_5_21565001 chrX_21565001 RAL-776 1904 chrX 22446271 22446287 chrX 22446364 22446380 4 93 2.0 2.0 2.0 1.3 109 chrX 22446271 intron CG14621 + chrX 22446326 intron CG14621 + chrX 22446380 intron CG14621 + chrX_4_22445001 chrX_22445001 RAL-776 1905 chrX 22478881 22478897 chrX 22479014 22479030 9 133 0.0 2.0 1.0 4.5 149 chrX 22478881 intron CG12576 - chrX 22478956 intron CG12576 - chrX 22479030 intron CG12576 - chrX_9_22475001 chrX_22475001 RAL-776 1906 chrX 22522626 22522652 chrX 22525446 22525472 NOF 7 2818 2.5 1.5 2.0 2.3 2846 chrX 22522626 intron CG17600 + chrX 22524049 intron CG17600 + chrX 22525472 intron CG17600 + chrX_7_22520001 chrX_22520001 RAL-776 1907 chrX 22638628 22638634 chrX 22639416 22639422 4 788 1.5 2.5 2.0 1.3 794 chrX 22638628 intergenic not near genes chrX 22639025 intergenic not near genes chrX 22639422 intergenic not near genes chrX_4_22635001 chrX_22635001 RAL-776 1908 chrX 22660575 22660595 chrX 22660659 22660679 4 84 3.0 5.0 4.0 0.8 104 chrX 22660575 intron CR44997 + chrX 22660627 intron CR44997 + chrX 22660679 intron CR44997 + chrX_4_22660001 chrX_22660001 RAL-776 1909 chrX 22677302 22677328 chrX 22677511 22677537 11 209 0.5 2.5 1.5 4.4 235 chrX 22677302 intron CR44997 + chrX 22677420 intron CR44997 + chrX 22677537 intron CR44997 + chrX_11_22675001 chrX_22675001 RAL-776 1910 chrX 22697497 22697524 chrX 22701791 22701821 Juan 10 4296 2.0 3.0 2.5 2.9 4324 chrX 22697497 intron CR44997 + chrX 22699659 intron CR44997 + chrX 22701821 intron CR44997 + chrX_10_22695001 chrX_22695001 RAL-776 1911 chrX 22771508 22771539 chrX 22774799 22774827 297 6 3288 2.0 3.0 2.5 1.7 3319 chrX 22771508 intron CR44997 + chrX 22773168 intron CR44997 + chrX 22774827 intron CR44997 + chrX_6_22770001 chrX_22770001 RAL-776 1912 chrX 22798772 22798801 chrX 22798889 22798917 11 114 1.0 1.5 1.2 5.0 145 chrX 22798772 intergenic not near genes chrX 22798844 intergenic not near genes chrX 22798917 intergenic not near genes chrX_11_22795001 chrX_22795001 RAL-776 1913 chrX 22811991 22812001 chrX 22816764 22816774 F-element 4 4773 3.5 1.5 2.5 1.1 4783 chrX 22811991 intergenic CG12446 - chrX 22814382 intergenic not near genes chrX 22816774 intergenic not near genes chrX_4_22810001 chrX_22810001 RAL-776 1914 chrX 22922520 22922548 chrX 22922600 22922628 7 80 1.0 3.0 2.0 2.3 108 chrX 22922520 intergenic not near genes chrX 22922574 intergenic not near genes chrX 22922628 intergenic not near genes chrX_7_22920001 chrX_22920001 RAL-776 1915 chrX 22996310 22996327 chrX 23003544 23003559 roo 8 7234 3.0 1.0 2.0 2.7 7249 chrX 22996310 intron,intron stnA -,stnB - chrX 22999934 intron,intron stnA -,stnB - chrX 23003559 intron,intron stnA -,stnB - chrX_8_22995001 chrX_22995001 RAL-776